TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.634225 %AT, 2448546 nt, 10402 terms. Intergenic: 0.677748 %AT, H2T: 484761 nt, 2040 terms; T2T: 167533 nt, 1750 terms; H2H: 219026 nt, 2166 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|15896971|ref|NC_002754.1| Sulfolobus solfataricus P2, complete genome (length 2992245) SSO0001 249 - 857 + | hypothetical protein thiD-1 889 - 2091 + | phosphomethylpyrimidine kinase (thiD-1) TERM 1 2761 - 2750 - g 76 -4.4 -5.14477 | TAGAGACGGAAAAAA GGTA CTTA TACC AGCTCCTAAAGTAAA rbsK-1 2088 - 2969 + | ribokinase (rbsK-1) SSO0006 3057 - 3743 + | hypothetical protein TERM 2 4026 - 4003 - g 71 -5.2 -4.68384 | opp_overlap 4003, overlap 4004 ATTCATGCAAGAAAA GCCGGTAGGA AATT TCTTACCGGA CTATCTCACGCTCAT TERM 3 4025 - 4004 - g 73 -8.7 -3.40307 | opp_overlap 4003, overlap 4003 TTCATGCAAGAAAAG CCGGTAGGA AATT TCTTACCGG ACTATCTCACGCTCA SSO0007 3736 - 4458 + | hypothetical protein SSO0008 4500 - 5348 + | IS605-TnpB family transposase SSO0009 6334 - 5351 - | deacetylase, putative TERM 4 5974 - 5964 - G 78 -5.4 -4.92239 | TTAAAAATGCAAAAA CCTA GGG TAGG AGCACCAAACGCTCT SSO0010 6376 - 7431 + | X-pro aminopeptidase TERM 5 7584 - 7610 + G 74 -9.7 -2.64987 | opp_overlap 7589, overlap 7586 7589 GGTGAAAAAGAGTTT GATAATATTAC TTTTT GTAATATTATC TCCTATAACATATTT TERM 6 9369 - 9355 - g 71 -8.6 -3.24365 | overlap 9353 GGATATGTTACAATA CAAGCT CAA AGCTTG TGGGGAGAAGTAACA SSO0011 7555 - 10479 + | hypothetical protein SSO5023 10496 - 10651 + | hypothetical protein TERM 7 11051 - 11031 - f 70 -7.1 -3.75578 | ATACATAATATAGAA TTTTTAATT AAA AATTAAAAA TATAAAAATATAATT TERM 8 11332 - 11365 + G 71 -4.7 -4.56729 | gap 1, opp_overlap 11332 11340, overlap 11334 11338 CAGATACTAAAGGAA TTGAATTACCTACTAC TAA GT-GTAGGTATTTCCA TTTTCGTCTTTTACT SSO0012 11143 - 11760 + | hypothetical protein SSO5027 11946 - 11767 - | hypothetical protein TERM 9 12124 - 12169 + G 82 -11.3 -3.45027 | opp_overlap 12168, overlap 12122 TGTATCTGAGTTATT CGCTTCGAGAATTGGTAAACT AATG GGTTTGCCTATTCTAGAAGTG TCTTTAATAAAACAT SSO0013 12050 - 12673 + | hypothetical protein SSO0014 13030 - 12647 - | hypothetical protein TERM 10 12722 - 12701 - G 73 -3.1 -5.23316 | CATTAGATTAAAAAA TACAATTAT AGTT ATTATTGTA TATAGCTTATTTCTC SSO0015 13880 - 13020 - | hypothetical protein SSO0016 15314 - 13920 - | transcription regulator (exsB) related protein TERM 11 17578 - 17556 - g 76 -9.8 -3.07522 | opp_overlap 17554 17573, overlap 17532 ACACGTTGTAATATA CGACTCCTCC ATA GGAGGAAGCG GAGTTTCTAAATTAT SSO0017 15589 - 17808 + | ATP-dependent helicase SSO0018 17801 - 19660 + | hypothetical protein moaB 20195 - 19647 - | molybdenum cofactor biosynthesis protein B (moaB) SSO0020 21008 - 20199 - | hypothetical protein soxB-like 21513 - 22064 + | oxidoreductase, soxB-like, putative (soxB-like) SSO0022 22492 - 22052 - | hypothetical protein SSO0023 22598 - 23215 + | hypothetical protein SSO0024 23842 - 23195 - | hypothetical protein SSO0025 23895 - 24512 + | hypothetical protein purT 24484 - 25713 + | phosphoribosylglycinamide formyltransferase 2 SSO0028 26757 - 25702 - | acetylpolyamine aminohydrolase SSO0029 26805 - 27947 + | hypothetical protein SSO0031 27944 - 28660 + | hypothetical protein SSO0032 29461 - 28655 - | hypothetical protein SSO0033 30088 - 29591 - | hypothetical protein soj 30202 - 30864 + | SOJ protein (soj) SSO0035 30861 - 31190 + | hypothetical protein TERM 12 31420 - 31373 - g 82 -10.4 -3.55202 | opp_overlap 31381, overlap 31371 GACCTTTAAATAATA TATTAACATTTATACCAGAT CAATATAT ATCTGATATAAATATTAATA ATGAACGTACCGTTG SSO0036 31267 - 31734 + | hypothetical protein SSO0037 32275 - 34002 + | hypothetical protein TERM 13 34222 - 34232 + F 75 -2.6 -5.58179 | opp_overlap 34222 AAACTCCTAACAGAA TTAA TTA TTAA TTTTTTGTTGTAATA SSO0038 34256 - 34702 + | hypothetical protein SSO0039 35257 - 34685 - | hypothetical protein TERM 14 35592 - 35573 - gH 77 -9.3 -3.30969 | ACCCACGAAACTGAA GGACGAG GAAAAG CTCGTCC GAATCTTAGAAAAGA SSO0040 35370 - 35828 + | transposon ISC1078 Orf1 SSO0041 35789 - 36382 + | second ORF in transposon ISC1078 SSO0042 37320 - 36667 - | second ORF in transposon ISC1234 SSO0043 37811 - 37479 - | transposon ISC1234 Orf1 doxB 38481 - 40262 + | Heme bearing subunit I of the terminal oxidase (doxB) doxC 40264 - 41331 + | terminal oxidase, subunit (doxC) doxE 41328 - 41528 + | terminal oxidase, small hydrophobic subunit (doxE) SSO0046 42533 - 41790 - | hypothetical protein SSO0048 42978 - 43367 + | transcriptional regulator SSO0049 43434 - 43829 + | hypothetical protein paaF-1 43863 - 44612 + | enoyl CoA hydratase (paaF-1) SSO0051 45619 - 44609 - | hypothetical protein SSO0053 46343 - 45603 - | ABC transporter, ATP binding protein hypE 46297 - 47328 + | hydrogenase expression/formation protein (hypE) SSO0054 47249 - 47788 + | hypothetical protein TERM 15 47808 - 47821 + G 71 -4.5 -4.73448 | overlap 47814 AATAATCATCCTTTC GCCTT TTAG AGGGC TTTTTAGATCTCTAT SSO0055 47785 - 48516 + | hypothetical protein SSO0057 48833 - 49279 + | hypothetical protein gnptA 51206 - 50238 - | UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (gnptA) gdS-1 52205 - 51207 - | geranylgeranyl pyrophosphate synthetase (gdS-1) TERM 16 51367 - 51386 + g 70 -2.8 -5.1848 | TTTCTTATTATTTCC GAGGCTCT TTCT AGATCTTC TTTTTTAGCTTCCTT TERM 17 51840 - 51852 + g 72 -7.7 -3.71873 | opp_overlap 51840 TAGTGCCTCATTTAA GGCTT CAA AAGCC TTTGCGTGTAAGTAA SSO0063 53313 - 52207 - | isopentenyl pyrophosphate isomerase TERM 18 52712 - 52730 + g 71 -4.6 -4.75288 | overlap 52713 AGCTTTGCAGTTTCC ATGGAAAT ACC ATTTCCAC TTTCTTTTACTATAA TERM 19 52713 - 52729 + g 70 -8.1 -3.44088 | overlap 52712 GCTTTGCAGTTTCCA TGGAAAT ACC ATTTCCA CTTTCTTTTACTATA TERM 20 53273 - 53217 - G 82 -7.5 -4.45544 | opp_overlap 53233, overlap 53225 53233 CTTGATGAACTAAAA TTACATCATTTAAGAACGTTGACGA AGATAGA CCGTCAACGTTTTCAAAAGCTGCAA TTTCTACATGTTCAA TERM 21 53233 - 53257 + g 73 -7.2 -4.08767 | opp_overlap 53225 53217 53233 TACATCATTTAAGAA CGTTGACG AAGATAGAC CGTCAACG TTTTCAAAAGCTGCA TERM 22 53257 - 53233 - G 72 -7.9 -3.70109 | opp_overlap 53233, overlap 53225 53217 TACATCATTTAAGAA CGTTGACGA AGATAGA CCGTCAACG TTTTCAAAAGCTGCA SSO0064 54031 - 53306 - | hypothetical protein SSO0065 54699 - 53977 - | hypothetical protein SSO0066 55480 - 54626 - | hypothetical protein rps2P 56172 - 55477 - | 30S ribosomal protein S2 rpoN 56369 - 56169 - | DNA-directed RNA polymerase subunit N rps9p 56798 - 56376 - | 30S ribosomal protein S9P rpl13p 57235 - 56786 - | 50S ribosomal protein L13P rpl18E 57591 - 57232 - | 50S ribosomal protein L18e rpoD 58385 - 57588 - | DNA-directed RNA polymerase, subunit D (rpoD) rps11p 58795 - 58397 - | 30S ribosomal protein S11P rps4p 59324 - 58779 - | 30S ribosomal protein S4 rps13p 59832 - 59335 - | 30S ribosomal protein S13P SSO0076 61151 - 59853 - | hypothetical protein SSO0077 61275 - 61688 + | hypothetical protein tyrS 61719 - 62819 + | tyrosyl-tRNA synthetase dnaG 62827 - 64047 + | DNA primase dpo3 66328 - 64034 - | DNA polymerase III (DNA polymerase B3) (pfu polymerase). (dpo3) TERM 23 64063 - 64083 + g 79 -3.4 -5.4477 | AAGCTCCAAATAAGT CTAGTATA TCAGT TATATTAG TTTTTTTCAAACTTT TERM 24 65098 - 65111 + g 90 -3.9 -5.93252 | TACCAACTTTTGGTT GAATA ATTA TATTC TTTTTTATTTTTGAA SSO0082 66835 - 66380 - | N-terminal acetyltransferase complex ard1 subunit pelA 66854 - 67888 + | cell division protein pelota homolog (pelA) SSO0084 68911 - 67859 - | hypothetical protein SSO0085 69437 - 68859 - | hypothetical protein SSO0086 69993 - 69430 - | hypothetical protein SSO0087 70054 - 71214 + | hypothetical protein lysS 72679 - 71195 - | lysyl-tRNA synthetase (lysS) TERM 25 71363 - 71349 - G 79 -7.2 -4.37658 | opp_overlap 71362 AAGGCTCTTACAAAA TCCTTA TCG TAAGGA TGAGCCTCCTCGTCT TERM 26 72611 - 72623 + g 88 -4.8 -5.57396 | opp_overlap 72611 GTATTTATGAGGATA TGGC TCAAT GCCA TTTTTTCTTAATTCT TERM 27 72813 - 72800 - R 77 -8.1 -3.87815 | CTTCATCCCCATAAA GGGTC TTAA GACCC AATGTCTAGCATTAA rpl7ae 74100 - 73708 - | 50S ribosomal protein L7Ae gltX 76041 - 74314 - | glutamyl-tRNA synthetase SSO0094 76711 - 76025 - | hypothetical protein SSO0095 77907 - 76708 - | hypothetical protein TERM 28 78005 - 77949 - R 86 -11.6 -2.86568 | gap 1, overlap 77947 GAAATATAAAACCCA TCCCAGCTTAGTGGGGCTGCGGAT-CC TCAC GGTATCCACGGCCCCACTAACGTGAGC GGCTTAACTTCCGGG SSO0097 79423 - 78293 - | hypothetical protein SSO0098 80372 - 79467 - | methionine aminopeptidase TERM 29 81072 - 81062 - g 70 -5.4 -4.46854 | CTAGTTAAGAACAAA GGAT ATA ATCC CATAGTATTACAACC SSO0099 80426 - 81109 + | hypothetical protein TERM 30 81187 - 81170 - g 88 -4.9 -5.46629 | AAGATCTTAAAAAAA CAAATTC AGTG GAACTTG CAATAAAAATGGGCA pheS 81106 - 82512 + | phenylalanyl-tRNA synthetase subunit alpha pheT 82518 - 84152 + | phenylalanyl-tRNA synthetase subunit beta SSO0102 84240 - 84935 + | esterase, tropinesterase related protein cinA 85734 - 84916 - | competence damage-inducible protein A aspB-1 85752 - 86957 + | aspartate aminotransferase (aspB-1) SSO0106 87813 - 86950 - | hypothetical protein SSO0107 87870 - 88241 + | hypothetical protein SSO0108 88610 - 88218 - | hypothetical protein TERM 31 88834 - 88809 - g 93 -7.7 -5.08601 | CTATGTCAAGAAAAA CATTAAACCGT TTAG AGGGTTTAATG CAGACGGGTTATATG SSO0109 88678 - 89373 + | hypothetical protein TERM 32 89955 - 89942 - g 72 -3.9 -4.92239 | GGAAAAAGTCAAAAA TCTTA TCTC TAAGA AACTCATAGCGTTAA SSO0110 89415 - 90317 + | hypothetical protein SSO0112 93199 - 90572 - | ATP-dependent helicase SSO0111 90305 - 90655 + | hypothetical protein TERM 33 91732 - 91742 + gT 74 -4 -5.14949 | TACTACCTTTCTTGG GATA AAT TATC TTTTCTTCTTTTATT SSO0114 94617 - 93241 - | hypothetical protein SSO0115 95191 - 94607 - | hypothetical protein ntH-1 95849 - 95139 - | DNA endonuclease III, (ntH-1) SSO5209 95902 - 96168 + | hypothetical protein SSO0117 96562 - 96149 - | hypothetical protein TERM 34 96565 - 96535 - G 74 -2.6 -5.26316 | overlap 96537 96539 TTAGTGTAGAAAAAA TAGATGAAATAGCT TTC AACCACATCACCTA ATTTACGCTATTGAA SSO0118 97032 - 96568 - | hypothetical protein TERM 35 96652 - 96662 + g 73 -6.8 -4.21933 | TTCAACAGTGTAGTA CTGC CCA GCAG TTATTTTGCCGTTAA SSO0119 98595 - 97075 - | hypothetical protein TERM 36 98313 - 98293 - GR 73 -8.3 -3.39931 | opp_overlap 98298, overlap 98298 ATAAGCGAATAGTAA GAAAACGGG CAT CTCGTTTTC TATAAGCTTTCTTTG gspE-1 100018 - 98567 - | Type II secretion system protein, virB homolog (gspE-1) SSO0121 102102 - 100015 - | hypothetical protein sun-2 103238 - 102132 - | Sun (fmu) protein (sun-2) TERM 37 103464 - 103479 + r 71 -7.6 -3.42147 | TGTTAACTCAATTTT CATTGC AGCT GCAATG TTCGTATTAATTAGA SSO0123 104171 - 103509 - | hypothetical protein SSO0124 104246 - 105148 + | hypothetical protein ubiA 106164 - 105256 - | prenyltransferase leuA-1 107822 - 106161 - | alpha-isopropylmalate/homocitrate synthase family transferase TERM 38 108357 - 108333 - R 71 -2.9 -5.25803 | overlap 108336 108337 AAGGCTGAGAAAAAA GAACTGATTTA AGC CAAATCAATAC ATCAGTTATGAAACT SSO0128 109137 - 108316 - | Iron (III) ABC transporter, periplasmic-binding protein, putative cbiG 110052 - 109171 - | cobalamin biosynthesis protein G (cbiG) SSO0131 110804 - 110094 - | hypothetical protein SSO0132 111396 - 111001 - | hypothetical protein SSO0133 111846 - 112274 + | transposon ISC1212 Orf1 SSO0134 112358 - 112801 + | second ORF in transposon ISC1212 SSO0137 113859 - 112903 - | partial transposase ISC1359 TERM 39 113807 - 113835 + g 89 -11 -4.09827 | ATCTTGAGGGCGGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC SSO0138 115024 - 114650 - | hypothetical protein TERM 40 115182 - 115150 - R 100 -16.5 -3.2789 | opp_overlap 115155, overlap 115155 ATAATTCTAAAGAGA TGAAAGTTGAGTGGG GTA CCCACTCAACTTTTA GCAATGACAAGCAAA TERM 41 115155 - 115177 + r 100 -16.4 -4.11216 | opp_overlap 115150 115155 TCTAAAGAGATGAAA GTTGAGTGGG GTA CCCACTCAAC TTTTAGCAATGACAA TERM 42 115177 - 115155 - R 100 -16.4 -3.97308 | opp_overlap 115155, overlap 115150 TCTAAAGAGATGAAA GTTGAGTGGG GTA CCCACTCAAC TTTTAGCAATGACAA SSO0140 117074 - 115476 - | primase (carboxy-end fragment) TERM 43 116789 - 116755 - G 76 -5.1 -4.92757 | gap 1, opp_overlap 116764 116766, overlap 116757 TCAGCAAGAACAAAA GA-TGGTACATATCGC CCGT GCGATATCTTCCACTC TAATGTGCAATTGGG TERM 44 116786 - 116757 - G 76 -7.9 -4.07486 | opp_overlap 116764 116766, overlap 116755 AGCAAGAACAAAAGA TGGTACATATCGC CCGT GCGATATCTTCCA CTCTAATGTGCAATT SSO0141 117302 - 118267 + | transposase ISC1439 SSO0142 119638 - 118421 - | primase (amino-end fragment) TERM 45 119736 - 119724 - R 72 -9.1 -2.78495 | opp_overlap 119723 119720, overlap 119720 TATCACTAAAACTTA GCGGA CAT TCCGC ATAGTATCCTATGTA TERM 46 119781 - 119803 + r 71 -2 -5.33331 | AATCGTCAAAGCAGT GCCTTC CAAATGGGCAT GAAGGC TTTTTATTCTGTTTA TERM 47 120083 - 120098 + r 70 -6.2 -4.26076 | opp_overlap 120081 120082 ATGCGTTTATAAATT TTCTCT GTCG AGAGAA TTTTCGTGGGAATAG TERM 48 120874 - 120894 + r 71 -5.5 -4.71426 | CTCATCATCCGCCAT TTCAACCAA TTG TTGTTTGAA TTTTCTTGGTAGGAA SSO0143 122189 - 121317 - | SSV1 integrase fragment homolog (orf D-335) TERM 49 122591 - 122609 + H 87 -10.3 -3.66178 | overlap 122579 122576 GAACCCGGGACCTAC GGGTTGC TTTCC GCAACCC TTTGCGGTTAAAAGC TERM 50 122653 - 122623 - H 93 -11 -4.07568 | CCTTTGCGGTTAAAA GCCCGCCGCTCTAC CTG GCTGAGCTACGGGC CCAAACGTAAGTAGT arsB 122786 - 124021 + | arsenite transport protein (arsB) SSO0147 124663 - 125556 + | hypothetical protein SSO0149 126319 - 125531 - | hypothetical protein SSO0150 126647 - 126291 - | hypothetical protein TERM 51 127065 - 127039 - H 77 -3.8 -5.32396 | AGAGGAAAAACAAAA TCTCAATTCAAT ATA ATTGATCTAAGA ACAGAGTATATCAGA TERM 52 127105 - 127089 - H 73 -8.1 -3.51406 | TATCAGAAAGAGCAA TGCTTAT ATA ATAAGCA AAGTAAGATAATAAT hpS-1 127134 - 127763 + | D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hpS-1) SSO0152 127806 - 129608 + | hypothetical protein SSO0154 130016 - 129588 - | hypothetical protein TERM 53 130516 - 130501 - g 76 -3.3 -5.30155 | CGAGGAATTAAAAAA TGCTA AACTTA TAGCA TCCCCAGGCTGTAAT argC 130070 - 131128 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 131130 - 131924 + | acetylglutamate kinase SSO0157 131917 - 132345 + | transcriptional regulator SSO5317 132412 - 132582 + | hypothetical protein TERM 54 132680 - 132690 + G 70 -3.2 -5.07053 | TACTATATATAGTAA GGAT TTT GTCC TTTTTTCAAATGATT rimK-1 132570 - 133430 + | ribosomal protein S6 modification protein (rimK-1) TERM 55 133809 - 133792 - gf 76 -6.3 -4.65895 | TGTTGCATTTAAAAA CTCCTTC CATG GAAGAAG TATGGGTGCCCTATC argD 133415 - 134593 + | acetylornithine aminotransferase ArgD SSO0162 134541 - 135581 + | acetyl-lysine deacetylase SSO0163 135566 - 136354 + | undecaprenyl diphosphate synthase rps8E 136398 - 136799 + | 30S ribosomal protein S8e TERM 56 136972 - 136960 - g 85 -2.7 -5.8901 | ATAGAAAATAAAAAA TATCC TAG AGATA GAAAGATTAATTTTT SSO0165 136780 - 137088 + | hypothetical protein TERM 57 137459 - 137449 - g 72 -4 -4.89852 | GTAGATGCAGAAAAA GTAA TCT TTAC CTCATCATCTACTGT galE-2 137128 - 138063 + | UDP-glucose 4-epimerase (galE-2) TERM 58 138443 - 138413 - T 76 -9.6 -3.05343 | CTTACATGGTTAAGA GCCCGTCGCTCTAC CTG GCTAAGCTACGGGC CCAACAATAAAAACT TERM 59 138481 - 138457 - T 72 -3.7 -5.29445 | overlap 138458 GCCCAACAATAAAAA CTACTTTAAAT AAT ATATAAAGTAA ACGGTTTCTGACTAT SSO0167 139618 - 138497 - | methyl coenzyme M reductase system, component A2-like protein SSO0168 140172 - 139591 - | hypothetical protein SSO0169 140723 - 140169 - | hypothetical protein ilvB-1 142498 - 140783 - | acetolactate synthase large subunit IlvB SSO0171 142612 - 143181 + | hypothetical protein rpl40e 143365 - 143195 - | 50S ribosomal protein L40e SSO0172 143428 - 143940 + | transcription elongation factor NusA-like protein aspC 143942 - 145231 + | aspartyl-tRNA synthetase SSO0174 146368 - 145235 - | hypothetical protein SSO0175 146727 - 146365 - | peptidyl-tRNA hydrolase SSO5343 146792 - 146989 + | hypothetical protein ef1B 147003 - 147278 + | elongation factor 1-beta SSO0176 147343 - 149652 + | AAA ATPase family protein rad2 150044 - 150952 + | flap endonuclease-1 hemA 151633 - 152913 + | glutamyl-tRNA reductase TERM 60 153351 - 153374 + GF 82 -11.1 -2.72991 | GTGCAGACGTTATAG CTCCATCCA GCATGA TGGATGGAG TAGTTAGGGCTATAA SSO0181 152828 - 153853 + | delta-aminolevulinic acid dehydratase hemL 153826 - 155106 + | glutamate-1-semialdehyde aminotransferase (hemL) SSO0183 155103 - 155984 + | porphobilinogen deaminase SSO0184 155965 - 156678 + | uroporphyrinogen III synthase, putative SSO0185 156923 - 158560 + | hypothetical protein TERM 61 159159 - 159139 - gf 74 -9.1 -3.09749 | overlap 159126 CAGGCGGAAGATACA TTCCACCAA TAT TTGATGGAA ACGATATACCCGGTA soxA-like 158520 - 159971 + | sarcosine oxidase, subunit alpha related (soxA), putative (soxA-like) soxB-like 159972 - 161090 + | sarcosine oxidase, subunit beta (soxB-like) SSO0188 162078 - 161092 - | hypothetical protein lig 163914 - 162109 - | ATP-dependent DNA ligase TERM 62 164440 - 164423 - g 78 -9.9 -3.33792 | opp_overlap 164422 164423, overlap 164421 164435 ATTATTTAGAGAAGA GCTGGAT AAAA ATCCAGC CTTTAAGGGAGGATA TERM 63 164423 - 164440 + G 74 -9.9 -2.71924 | opp_overlap 164423 164421 164435, overlap 164422 ATTATTTAGAGAAGA GCTGGAT AAAA ATCCAGC CTTTAAGGGAGGATA dcd 164314 - 164934 + | deoxycytidine triphosphate deaminase SSO0191 165574 - 164888 - | hypothetical protein TERM 64 165492 - 165469 - G 75 -5.4 -4.73094 | opp_overlap 165472, overlap 165472 AAGATGAAGAGAAAA GAAGTGATTT AACA AAATCACTTA ATAAAACGAAACCTT TERM 65 165489 - 165472 - G 79 -7.1 -4.45115 | opp_overlap 165472, overlap 165469 ATGAAGAGAAAAGAA GTGATTT AACA AAATCAC TTAATAAAACGAAAC SSO0192 166320 - 165619 - | glutaredoxin-like protein TERM 66 165957 - 165941 - G 72 -9.5 -2.64616 | opp_overlap 165940 165939 TCTTGACTTAGACCA CTTTCAC CTT GTGAAAG CCTTACTATAGTCTC SSO0193 167198 - 166515 - | hypothetical protein TERM 67 166936 - 166949 + gr 70 -8.1 -3.00298 | opp_overlap 166925 166924 AAAGCGGCAGCTTTG GCTGC AGAC GCAGC TATCTGCTTCAAAGG SSO0194 167655 - 167125 - | hypothetical protein TERM 68 168288 - 168268 - g 100 -9.1 -4.92783 | overlap 168281 AAGGGATGATAAAAA GGTAATAGT AGA ACTACTACC TAGAGGAGTTTTGGT TERM 69 168731 - 168711 - g 70 -3.3 -5.05782 | overlap 168723 AGCTATCTGAAAAAA CTTCCAAAA AAA TCTCAGAAG AGAAGCAGAAGATTA TERM 70 168734 - 168723 - g 84 -4.4 -5.4477 | overlap 168711 AAACTTCCAAAAAAA TCTC AGAA GAGA AGCAGAAGATTATAG SSO0195 167915 - 169744 + | hypothetical protein SSO0197 169763 - 170626 + | hypothetical protein TERM 71 171931 - 171919 - g 78 -6.3 -4.7908 | AAAAATACAAATAAA CTAAC TAA GTTAG AAGAGGAAAATAGAG SSO0198 170623 - 172464 + | hypothetical protein maT 173670 - 172438 - | S-adenosylmethionine synthetase snRNP-1 173949 - 173686 - | small nuclear riboprotein protein (snRNP-1) SSO0200 174056 - 174355 + | hypothetical protein pyrG 175930 - 174323 - | CTP synthetase hpS-2 176021 - 176698 + | D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hpS-2) SSO0203 176721 - 177188 + | hypothetical protein SSO0205 177619 - 177200 - | hypothetical protein SSO0206 178051 - 177662 - | hypothetical protein pmM 179415 - 178048 - | phosphomannomutase (pmM) TERM 72 179535 - 179479 - RH 83 -8.4 -4.27443 | opp_overlap 179482 179485, overlap 179476 CTATGATCAAAAGAA GGGCTCGGGCCGGGATTTGAACCCGG GACTT CCGGGTCCACAGCCCGGCGCTCTTCC AGGCTGAGCTACCCG TERM 73 179485 - 179529 + rH 100 -16.3 -3.03124 | opp_overlap 179476 179479, overlap 179482 TCAAAAGAAGGGCTC GGGCCGGGATTTGAACCCGGG ACT TCCGGGTCCACAGCCCGGCGC TCTTCCAGGCTGAGC dfp 180845 - 179604 - | DNA/pantothenate metabolism flavoprotein (dfp) SSO0209 180731 - 181381 + | acetyltransferase SSO0212 182715 - 181819 - | hypothetical protein TERM 74 182326 - 182356 + gTr 75 -5.4 -4.77157 | opp_overlap 182336, overlap 182327 CCATCTAGTCTCGAG AGCTCCTAAACTCC TTA GAAGTTTAGCAGCC TTTTTCCTCAATTCA TERM 75 182327 - 182355 + gTr 78 -8.9 -3.45571 | opp_overlap 182336, overlap 182326 CATCTAGTCTCGAGA GCTCCTAAACTCC TTA GAAGTTTAGCAGC CTTTTTCCTCAATTC SSO0213 183577 - 182678 - | hypothetical protein SSO0214 184449 - 183541 - | hypothetical protein rps10p 185567 - 185259 - | 30S ribosomal protein S10P TERM 76 185599 - 185586 - R 75 -2.5 -5.52023 | opp_overlap 185586 ATCACCAATAAAAAA TTAAA ATTA TTTAA TTTCTACTTTGGCTG tuF-1 186899 - 185592 - | elongation factor 1-alpha rpS7AB 187526 - 186945 - | 30S ribosomal protein S7P SSO0218 187602 - 188081 + | hypothetical protein rps12P 188605 - 188153 - | 30S ribosomal protein S12P nusA 188985 - 188611 - | transcription elongation factor NusA rpl30E 189375 - 189049 - | 50S ribosomal protein L30e rpoA2 190559 - 189372 - | DNA-directed RNA polymerase subunit A'' rpoA1 193189 - 190547 - | DNA-directed RNA polymerase subunit alpha rpoB1 195144 - 193195 - | DNA-directed RNA polymerase subunit B' rpoB2 196571 - 195129 - | DNA-directed RNA polymerase subunit beta'' rpoH 196831 - 196577 - | DNA-directed RNA polymerase subunit H infB 197205 - 199007 + | translation initiation factor IF-2 ndk 199412 - 198996 - | nucleoside diphosphate kinase (NDP kinase) (ndk) rpl24E 199601 - 199416 - | 50S ribosomal protein L24e rps28e 199626 - 199922 + | 30S ribosomal protein S28e upp 199932 - 200582 + | uracil phosphoribosyltransferase TERM 77 200783 - 200756 - g 76 -5.8 -4.58773 | gap 1 CGTATTAAATGAAAA TGCAG-TAAAATA CGG TATCTTAACTGCA TTAGCCCTTAACTGT gatB 200640 - 202016 + | aspartyl/glutamyl-tRNA amidotransferase subunit B SSO0233 202018 - 202758 + | hypothetical protein SSO0234 202755 - 203297 + | hypothetical protein SSO0235 205267 - 203519 - | hypothetical protein TERM 78 204934 - 204946 + g 70 -5.5 -4.46615 | TCAAGTCAACATAGG GGACT TTA GGTCC TTTTCCTTCATACTC thiL 206300 - 205329 - | thiamine monophosphate kinase, putative (thiL) purB 207904 - 206480 - | adenylosuccinate lyase purP 207852 - 208922 + | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase TERM 79 209214 - 209203 - g 74 -4.4 -4.90477 | overlap 209198 TAGAAAAAATGAAAA CGAA AGTC TTCG GCAATAGATATATGT TERM 80 209638 - 209622 - g 72 -3.7 -4.92385 | overlap 209625 GACATTCAAATAAAA TTAGGTA GGA TACCAAA ACTAATAGAGGTTGG purP 208923 - 209972 + | 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein TERM 81 210732 - 210718 - g 75 -7.2 -4.35461 | opp_overlap 210717 GGAATAGGACCAAAA TATGTG GAT CACATA ATAATTACCTTCAAG purA 210097 - 211104 + | adenylosuccinate synthetase SSO0244 211105 - 212514 + | hypothetical protein nirD 212541 - 213524 + | Heme biosynthesis nirD related protein (nirD) TERM 82 213511 - 213539 + T 74 -3.9 -5.3104 | AGAATCTAAAACCCG GGATCGTTATTTA GCT TAGAGAAAGATCC TTTTATTTTTAATAC pheA 214310 - 213501 - | chorismate mutase (CM)/prephenate dehydratase (PDT) (pheA) tdcB 215556 - 214339 - | threonine dehydratase TERM 83 214613 - 214597 - G 76 -5.1 -4.96848 | TTGTCTATATAAAAA CTTCTCT GTT AGAGTAG ACAATAATGATAAGT TERM 84 214935 - 214923 - G 74 -7.7 -3.89501 | CAAGATCCTTAGAAA CCTTC ATT GAAGG AGAAGAAGAAGACTG hit 216095 - 215580 - | HIT-like protein radA 217109 - 216135 - | DNA repair and recombination protein RadA SSO0251 217711 - 217166 - | hypothetical protein SSO0252 218709 - 217690 - | proliferating cell nuclear antigen TERM 85 218298 - 218288 - G 74 -4 -5.11836 | ATATCCAAAACAAAA TCAT CAT ATGA AGGATTTAGAACGTA TERM 86 218691 - 218701 + g 70 -6.8 -4.18018 | opp_overlap 218690 GTGCACTTAAATACT TCGC TAT GCGA TTTTCCATCAGAGAA cyaB 218719 - 219279 + | adenylate cyclase CyaB SSO0254 219233 - 220078 + | hypothetical protein SSO0255 220198 - 220551 + | nicotinamide mononucleotide adenylyltransferase, putative SSO0256 221096 - 220557 - | hypothetical protein cdc6-1 222270 - 221077 - | cell division control 6/orc1-like protein SSO0258 224134 - 222803 - | hypothetical protein SSO5522 224382 - 224131 - | AsnC/Lrp family regulatory protein TERM 87 224961 - 224972 + r 72 -7.2 -3.8062 | GGGATTCTATCCCTA CCCC TTAC GGGG TTCTTGTAAGGGTTG SSO0259 226020 - 225253 - | geranylgeranylglyceryl phosphate synthase-like protein SSO0260 226273 - 225950 - | hypothetical protein SSO0261 226788 - 226429 - | hypothetical protein SSO0262 227300 - 227599 + | integrase, ( amino-end fragment) SSO0264 228060 - 227596 - | hypothetical protein SSO0265 229009 - 228032 - | DNA modification methylase, type II R/M system TERM 88 228430 - 228453 + gr 77 -2.5 -5.54079 | gap 1 TGTTATCTAAATCAT GAATCGC-GT CGTAA ACTGTGATTC TTTTTTGATTTTTAA tfE 229523 - 228987 - | transcription factor E SSO0267 229998 - 229516 - | hypothetical protein hflX 231119 - 230049 - | GTP-binding protein (hflX) MBP-like 231613 - 231116 - | multiprotein Bridging factor (MBP-like), putative (MBP-like) SSO0271 231686 - 232867 + | proteasome-activating nucleotidase SSO5542 233034 - 233282 + | hypothetical protein SSO0273 233371 - 233670 + | hypothetical protein SSO5544 233827 - 234093 + | hypothetical protein tgtA 235572 - 234061 - | 7-cyano-7-deazaguanine tRNA-ribosyltransferase TERM 89 234476 - 234466 - G 78 -4 -5.27938 | ACCGTCAAATAAAAA CAAA CCT TTTG GATCTCCCCTTATTC SSO0276 236009 - 235569 - | hypothetical protein rpoG 236056 - 236454 + | DNA-directed RNA polymerase, subunit G (rpoG) SSO0278 237041 - 236451 - | proteasome subunit hisS 238356 - 237076 - | histidyl-tRNA synthetase SSO0281 238896 - 238363 - | tRNA-splicing endonuclease subunit beta SSO0280 238786 - 239298 + | hypothetical protein thsB 239345 - 241018 + | thermosome subunit beta TERM 90 241008 - 240995 - T 71 -5.3 -4.66456 | overlap 241004 AAAGAAAAAGATAAA GAAGA AAAA TCTTC TGAAGACTAAGATAT TERM 91 241014 - 241004 - T 77 -4 -5.42164 | overlap 240995 GATAAAGAAGAAAAA TCTT CTG AAGA CTAAGATATTTTTTT SSO0283 242643 - 241015 - | hypothetical protein TERM 92 241747 - 241772 + g 83 -7.1 -4.85177 | overlap 241751 TGTATCTTCCACGTC TAAATCTATTA AGTG TAATGGATTTA TTTTTACTATAGTTT TERM 93 241751 - 241768 + g 70 -3.5 -4.94262 | overlap 241747 TCTTCCACGTCTAAA TCTATTA AGTG TAATGGA TTTATTTTTACTATA TERM 94 242263 - 242275 + g 81 -2.7 -5.69473 | ATAAATTATTATAGA TGAAC CTA GTTTA TTTTTTTCTACTATA SSO0284 243029 - 242664 - | hypothetical protein SSO5559 243316 - 243065 - | hypothetical protein rps17E 243557 - 243318 - | 30S ribosomal protein S17e SSO0286 244716 - 243568 - | hypothetical protein SSO0287 246550 - 244748 - | putative ATPase RIL SSO0288 247233 - 246892 - | integrase, (fragment) TERM 95 247004 - 247040 + g 73 -9.3 -2.81937 | overlap 247004 AATCCCGGCGGGTCC GTTGTGGGGTTAGGGGG ATA CCCCCTAAAACCCCCAC TGCTATCTTTCAATT SSO0290 248924 - 247569 - | inorganic phosphate permease related protein rpoM-1 249473 - 249129 - | putative DNA-directed RNA polymerase subunit M rpoM-like 249755 - 249483 - | DNA-directed RNA polymerase, putative subunit M (rpoM-like) rpoL 250030 - 249752 - | DNA-directed RNA polymerase, subunit L (rpoL) SSO0292 250589 - 250020 - | exosome complex RNA-binding protein Csl4 SSO0293 251596 - 250595 - | hypothetical protein TERM 96 251552 - 251523 - G 73 -9.5 -2.83899 | gap 1, opp_overlap 251530 251533, overlap 251530 AATCCTTCAGGAAAT TGTAAAAGAACACG TTT CGCGTTCTTTT-CA CGTATCTCCTTGATT TERM 97 251546 - 251530 - G 83 -8.7 -4.25074 | opp_overlap 251530 251533, overlap 251523 CAGGAAATTGTAAAA GAACACG TTT CGCGTTC TTTTCACGTATCTCC TERM 98 251530 - 251546 + g 73 -6.5 -4.18401 | opp_overlap 251530 251523, overlap 251533 CAGGAAATTGTAAAA GAACACG TTT CGCGTTC TTTTCACGTATCTCC rpl10e 252129 - 251593 - | 50S ribosomal protein L10e SSO0295 253464 - 252385 - | hypothetical protein SSO0296 254333 - 253437 - | hypothetical protein TERM 99 253682 - 253664 - GRH 88 -7.6 -4.81863 | AAATTGACAAGAAAA TATTATGT GTT ACATAATA AAAATAACCTCCATA thiF 255334 - 254333 - | thiamine biosynthesis protein related protein (thiF) TERM 100 254791 - 254806 + gH 74 -6.2 -4.35116 | opp_overlap 254791 TAATTCCTCCATATA TTAGGA TTTT TCCTAA TTTTACTATAGCATC TERM 101 254847 - 254833 - GH 76 -8.6 -3.42702 | opp_overlap 254833, overlap 254831 CATCATTTAACAATA GCTTGT AGT ACAAGC TGTCTAATGCATCGA TERM 102 254833 - 254847 + gH 71 -8.6 -2.95298 | opp_overlap 254833 254831 CATCATTTAACAATA GCTTGT AGT ACAAGC TGTCTAATGCATCGA TERM 103 254891 - 254911 + gH 70 -8.3 -3.07534 | ATCAGAAATTAGCCT CTCGACG TTCTCCT CGTCGAG TATATCTATAATATA tkt-1 255258 - 256103 + | transketolase, N-terminal section (tkt-1) tkt-2 256072 - 257013 + | transketolase, C-terminal section (tkt-2) tyrA 257014 - 258054 + | chorismate mutase/prephenate dehydratase, putative (tyrA) TERM 104 258252 - 258240 - g 70 -3.4 -4.99947 | TGGAAGTAAAGAAAA GCTA TGTAT TAGC TGGTAATGATTGGAA aroG 258056 - 259051 + | 3-deoxy-7-phosphoheptulonate synthase aroB 259048 - 260112 + | 3-dehydroquinate synthase TERM 105 260493 - 260512 + G 78 -10.8 -2.72739 | overlap 260489 260487 260492 GGGGCTGGAGGTGCA GCAAAAGC AGCA GCTTTTGC GTTATCTGAATTAGG aroE 260097 - 260906 + | shikimate 5-dehydrogenase (aroE) aroC 260884 - 262059 + | chorismate synthase SSO0308 262008 - 262835 + | hypothetical protein aroA 262804 - 264048 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 106 264495 - 264510 + G 72 -7.6 -3.70773 | opp_overlap 264494 264495 264497 CTAAAAGGATATAAG GAGGTA CTCT TACCTC TTCTTGAATATGAAA aroD 264045 - 264707 + | 3-dehydroquinate dehydratase SSO0312 264982 - 264668 - | benzene 1,2-dioxygenase system ferredoxin component, putative TERM 107 264894 - 264875 - G 91 -4.4 -5.95286 | overlap 264877 ATCAAAAACAAAAAA TCTATCTA CTCC TAGATAAA AAACGACTAATTCAC TERM 108 265050 - 265040 - H 70 -4 -4.98255 | opp_overlap 265040 TGTTAAGCATAAAAA TAAG ACT CTTA TATAATAACATAACT SSO0313 265543 - 267195 + | DNA helicase SSO0314 267173 - 267997 + | hypothetical protein SSO0315 270347 - 268425 - | hypothetical protein sod 270412 - 271047 + | superoxide dismutase [Fe] (sod) SSO0317 271082 - 272167 + | sugar phosphate nucleotydyl transferase SSO0318 272169 - 272882 + | hypothetical protein SSO0320 274047 - 272869 - | hypothetical protein SSO0321 274562 - 275344 + | hypothetical protein NuoA 275424 - 275813 + | NADH dehydrogenase subunit A NuoC 275795 - 276304 + | NADH dehydrogenase subunit C NuoD 276282 - 277514 + | NADH dehydrogenase subunit D NuoH 277514 - 278572 + | NADH dehydrogenase subunit H NuoI 278497 - 279063 + | NADH dehydrogenase subunit I NuoJ 279044 - 279547 + | NADH dehydrogenase subunit J (NuoJ) NuoL 279779 - 283225 + | NADH dehydrogenase subunit L (NuoL) TERM 109 283906 - 283928 + GF 70 -3.4 -4.89521 | overlap 283910 CCAGATGTTTACACG GATGCTGATA GAA TATCAGTGGC TTTTATTTCAAGTGT NuoN 283168 - 284619 + | NADH dehydrogenase subunit N SSO0330 284612 - 285646 + | hypothetical protein TERM 110 285639 - 285657 + T 71 -5.4 -4.73613 | TTTTAAATAAGCTTT TAGGATAA GTC TTATTCTA TTTTATTAATGATAA thiI 286874 - 285759 - | thiamine biosynthesis protein thiI (thiI) TERM 111 285990 - 285974 - G 76 -5.9 -4.61231 | opp_overlap 285974, overlap 285976 TTAGAGGTCTAAAAA TAGGATA CTT TATCCCA TATTCAGTTACGTAT SSO0334 288432 - 287131 - | hypothetical protein SSO0335 289544 - 288531 - | hypothetical protein SSO0337 290643 - 289591 - | hypothetical protein TERM 112 290715 - 290735 + r 74 -5.5 -4.82548 | overlap 290696 290717 TATACATTTCAGTAT CAGTAATTA TTA TAATTACAG TTTTATGTATTTTTC TERM 113 290839 - 290860 + r 72 -7.3 -3.92659 | AATAAGCTCTGGCTT CCTTCACCT TAAA AGGTTAAGG TTTCAGTTTTAAACA SSO0340 291644 - 291003 - | hypothetical protein alaS 294356 - 291654 - | alanyl-tRNA synthetase rpl12p 294880 - 294560 - | 50S ribosomal protein L12P TERM 114 294681 - 294713 + g 73 -7.2 -4.04927 | TGAGTTGCTTGTGGT TG-TGCAGCTACTGCT ACC GGCA-TAGCTGCAGCA TTCTTTAGTACTTCA rplP0 295943 - 294927 - | acidic ribosomal protein P0 TERM 115 295090 - 295121 + g 91 -11.6 -3.76373 | ACTTTTCCGCCGATC GCGGTAGCTAATGC ATAT GCTTTAGCTACAGC TTTAGATATTACCGC rpl1P 296596 - 295940 - | 50S ribosomal protein L1P rpl11p 297119 - 296598 - | 50S ribosomal protein L11P nusG 297589 - 297116 - | transcription antitermination protein NusG TERM 116 297286 - 297300 + g 71 -4.2 -4.87665 | overlap 297288 CATCACCAGGTTTTA CAGTAG GAC CTACAG TTTTTCTAGATACAA secE 297767 - 297579 - | preprotein translocase subunit SecE srpR 298875 - 297799 - | signal recognition particle receptor protein SSO0349 299315 - 298872 - | prefoldin subunit alpha rplX 299591 - 299322 - | 50S ribosomal protein LX eiF6 300255 - 299584 - | translation initiation factor IF-6 rpl31E 300518 - 300252 - | 50S ribosomal protein L31e rpl39e 300683 - 300522 - | 50S ribosomal protein L39e pdcd5 301030 - 300674 - | hypothetical protein rps19E 301506 - 301042 - | 30S ribosomal protein S19e TERM 117 302144 - 302154 + G 70 -6.8 -4.08394 | opp_overlap 302144 GGTGATAACGTGAAA GCCT GGA AGGC TTTTGACGAGGCTAT SSO0354 301577 - 302740 + | nicotinate phosphoribosyltransferase SSO0356 303792 - 302737 - | phosphate regulatory protein, putative SSO0358 304849 - 303854 - | hypothetical protein TERM 118 303926 - 303940 + g 71 -4.2 -4.75518 | ATTAGTTGGTATCAT CCTTAC ACC GTATGG TTTTCGTTTTGTATA SSO0359 304893 - 305294 + | hypothetical protein TERM 119 306199 - 306183 - g 79 -7.3 -4.4017 | TCAACCCTCAGAAAA TTCCAGA ATT CCTGGAA TAAAGAGACAAAATG cysM 305563 - 306456 + | cysteine synthase B (cysM) SSO0361 306624 - 307280 + | hypothetical protein moaA 307487 - 308413 + | molybdenum cofactor biosynthesis protein A (moaA) TERM 120 308473 - 308486 + G 70 -5.3 -4.4204 | opp_overlap 308471 308473 AGTTGTGCCATAATA TTTGG TTCT CCAAA TTTATTCTACTTCTT pepQ 308410 - 309468 + | Prolidase (Xaa-Pro dipeptidase) (pepQ) folE 309522 - 310148 + | GTP cyclohydrolase I TERM 121 310361 - 310338 - g 76 -4.6 -5.14563 | opp_overlap 310338 310350 310352, overlap 310323 310339 GGTTTTAGGAAAAAA CCTTGAGGTA AGTT TATCTCAAGA TAGATTTTTGAGATT SSO0365 310168 - 311073 + | hypothetical protein glnA-1 312485 - 311070 - | glutamine synthetase (glutamate ammonia ligase) (GS). (glnA-1) TERM 122 311304 - 311320 + g 72 -3.7 -5.00196 | overlap 311306 TATATTCTCATCCAC TGGATCT CCT GGATCTA TTTTCTTATTTACAC SSO0367 313216 - 312608 - | ABC transporter, ATP binding protein trxA-1 313614 - 313213 - | thioredoxin (trxA-1) fadD-1 314965 - 313601 - | acyl-CoA synthase SSO0370 315002 - 315880 + | hypothetical protein sun-1 315925 - 316908 + | Sun (fmu) protein (sun-1) SSO0372 316920 - 317429 + | ferripyochelin binding protein nirJ-like 317426 - 318394 + | Heme biosynthesis related protein (nirJ-like) (nirJ-like) xerC/D 319240 - 318365 - | XerC/D integrase-recombinase protein (xerC/D) SSO0376 319315 - 320832 + | Na(+)/H(+) antiporter SSO0377 320846 - 321364 + | hypothetical protein ocd-like1 322277 - 321348 - | ornithine cyclodeaminase related protein (ocd-like1) SSO0379 322456 - 323946 + | hypothetical protein SSO0381 325076 - 323985 - | sugar phosphate nucleotydyl transferase TERM 123 324683 - 324695 + g 70 -9.1 -3.06302 | CACTTATCGGTATCA GCGGT ATT ACCGC TTGACTCCCCGTCAT glmS-1 326844 - 325069 - | D-fructose-6-phosphate amidotransferase TERM 124 325580 - 325590 + g 74 -4 -5.0916 | GCAGTTTCCAGATAC GAAA TGC TTTC TTTTTCTATTAGGGA SSO0383 327829 - 326885 - | mevalonate kinase thrS-like 329296 - 328136 - | threonyl-tRNA synthetase SSO0386 330797 - 329319 - | mRNA 3'-end processing factor, putative TERM 125 330380 - 330364 - G 70 -8.1 -3.34344 | opp_overlap 330350 TTAGTGTTCAATGAA CCTATTT GAT AAATAGG TAAAGCTCCTATATG SSO0387 331702 - 330962 - | hypothetical protein SSO0388 333398 - 332169 - | LPS biosynthesis protein, putative TERM 126 337227 - 337201 - g 73 -9.4 -2.80511 | overlap 337198 337193 GTTATAACGTAACTA CTGGAACTCCAG TGC CTGGCACTCCAG CATTCCAGACAGTAT SSO0389 333735 - 337430 + | hypothetical protein TERM 127 337428 - 337440 + F 84 -3.5 -5.80817 | ACGGCGATTTCAAGT TAAAA GGT TTTTA TTTTTTTCTCTTAAC SSO0390 337472 - 338665 + | hypothetical protein SSO0391 338970 - 341201 + | hypothetical protein SSO0392 342501 - 341941 - | hypothetical protein TERM 128 342446 - 342430 - G 73 -7.3 -4.07568 | TTCCTTTTTTGAAAA TATCCCC GGT GAGGATA GAAGGGTTAGAGGTA TERM 129 342492 - 342502 + g 81 -5.4 -5.13521 | CAAAAATTATGTACT CATG ACT CATG TTTTTTCCATGCTTT truB 343210 - 342491 - | tRNA pseudouridine synthase B truB 343532 - 343263 - | tRNA pseudouridine synthase subunit A (truB) rpl14E 343828 - 343538 - | 50S ribosomal protein L14e SSO0394 346610 - 343869 - | ATP-dependent helicase SSO0395 346650 - 348368 + | hypothetical protein SSO0396 348369 - 348683 + | hypothetical protein pcnA-like 348688 - 349437 + | proliferating cell nuclear antigen trzA-like 350543 - 349404 - | N-ethylammeline chlorohydrolase related protein (trzA-like) TERM 130 350230 - 350246 + g 72 -3.7 -5.06052 | overlap 350221 ACAAATCTCTCTATG GAGTTCA TGA TGGATTC TTTTGTGTTTTTTGC SSO0399 351217 - 350522 - | hypothetical protein ribH 351678 - 351214 - | riboflavin synthase subunit beta ribC 352126 - 351659 - | riboflavin synthase ribA 352782 - 352123 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase SSO0403 352910 - 353668 + | hypothetical protein SSO0404 354944 - 353640 - | cobyrinic acid A,C diamisynthase (CBIA) pcnA-1 355009 - 355788 + | proliferating cell nuclear antigen metE-1 355785 - 356777 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase metE-2 356770 - 357768 + | methionine synthase rps15p 357792 - 358250 + | 30S ribosomal protein S15P SSO0410 358633 - 358247 - | sirohydrochlorin cobaltochelatase rps6E 358711 - 359355 + | 30S ribosomal protein S6 eif2G 359364 - 360611 + | translation initiation factor IF-2 subunit gamma SSO0414 360575 - 361012 + | hypothetical protein rpoE1 361016 - 361558 + | DNA-directed RNA polymerase subunit E' rpoE2 361565 - 361765 + | DNA-directed RNA polymerase, subunit E'' (rpoE2) SSO0416 361738 - 362277 + | hypothetical protein TERM 131 362379 - 362395 + T 70 -7.3 -3.6135 | ATGAACCGTATTTCT CTGCTCT ATT AGAGTAG TTTAACAATATATTT SSO0417 363606 - 362362 - | cofactor-independent phosphoglycerate mutase SSO0421 365912 - 363603 - | AAA ATPase family protein TERM 132 363910 - 363946 + gH 70 -6.1 -4.27259 | overlap 363903 GCTAACTCCTCTAGG TTTACACTAGAATCT ATAGGTA ATGTTCTAGTGTAAA TTTTGAGTATCTCTA TERM 133 367309 - 367293 - gH 79 -5.1 -5.09204 | AGAGGTTAAGAAAAA TAAGCCC TGC GGCCTTA GCGATGTTAGCTAAG TERM 134 369383 - 369372 - gH 76 -5.8 -4.67692 | TGAAAAGTAAACAAA TCGG AAGA CCGA GCACGTACGCAGTAA TERM 135 369524 - 369512 - gH 70 -6.3 -4.21402 | ATGGAAAATTATAAA CAGAT AGT ATCTG AGAAACGAACTGTGA topR-1 365906 - 369634 + | reverse gyrase TERM 136 370010 - 369955 - g 75 -8.7 -3.63744 | overlap 369953 370008 GCTGGCCCTAAAATA TTCCT-TACTTCCCTTATAATATCGCC ACAA GGAGAGATTATA-GGGAAATATAGGAA AACTGTGTTATCTGA SSO0422 369637 - 370518 + | hypothetical protein rps25E 370854 - 370522 - | 30S ribosomal protein S25e SSO0426 370903 - 371634 + | hypothetical protein SSO5826 371678 - 371830 + | hypothetical protein SSO0427 371931 - 372701 + | protein L-isoaspartate methyltransferase SSO0428 372723 - 373058 + | hypothetical protein TERM 137 373700 - 373686 - g 71 -4.3 -4.84539 | opp_overlap 373686 CAATTAAACATAAAA CAGTA GAGAA TACTG TTTGTAAAATCGGTA SSO0429 373055 - 374035 + | hypothetical protein SSO0430 374318 - 375382 + | oxidoreductase SSO0432 375989 - 375411 - | HAM1 protein SSO0433 376620 - 375949 - | O-sialoglycoprotein endopeptidase SSO0434 377348 - 376608 - | O-sialoglycoprotein endopeptidase rps27AE 377816 - 377589 - | 30S ribosomal protein S27ae rps24e 378120 - 377758 - | 30S ribosomal protein S24e SSO0436 378990 - 378187 - | ribulose-1,5-biphosphate synthetase SSO0437 379208 - 379837 + | 3-octaprenyl-4-hydroxybenzoate decarboxylase SSO0438 380588 - 380199 - | hypothetical protein SSO0439 381177 - 380629 - | tRNA-splicing endonuclease subunit alpha TERM 138 381100 - 381078 - G 71 -7.1 -3.85698 | opp_overlap 381086 CTTTTGGCTTAGAAA TTCCTATGG GTTTT CCATAGAAA CCATTTGAATAAAGG SSO0440 381825 - 381178 - | hypothetical protein SSO0441 382255 - 381851 - | hypothetical protein SSO0442 382617 - 382252 - | hypothetical protein glyS 384325 - 382601 - | glycyl-tRNA synthetase speB-1 384378 - 385271 + | agmatinase SpeB rpoP 385404 - 385258 - | DNA-directed RNA polymerase subunit P TERM 139 385538 - 385511 - g 79 -7 -4.43859 | opp_overlap 385504 385513, overlap 385513 GAGAATGGCAGAAAA TCTGTGTGGTGG TCTT CCACCAGACATA TGTGAGCAACTTTCT TERM 140 385513 - 385536 + G 73 -9.6 -2.8806 | opp_overlap 385513 385511, overlap 385504 GAATGGCAGAAAATC TGTGTGGTGG TCTT CCACCAGACA TATGTGAGCAACTTT TERM 141 385536 - 385513 - g 71 -9.6 -2.54632 | opp_overlap 385504 385513, overlap 385511 GAATGGCAGAAAATC TGTGTGGTGG TCTT CCACCAGACA TATGTGAGCAACTTT SSO5866 385500 - 385661 + | protein translation factor SUI1-like protein tfb 386723 - 385794 - | transcription initiation factor IIB SSO0447 387452 - 388036 + | hypothetical protein hisC-like 388033 - 389013 + | histidinol-phosphate aminotransferase, putative (hisC-like) SSO0449 389447 - 389010 - | hypothetical protein alaS-like1 390195 - 389485 - | hypothetical protein TERM 142 390631 - 390616 - g 100 -10.4 -4.74598 | TAAATTTAAAATAAA GGGCTC TAAA GAGCCC TTAAAATACAAGTTG SSO0451 390329 - 391183 + | hypothetical protein trpS 391248 - 392390 + | tryptophanyl-tRNA synthetase SSO0454 392811 - 392359 - | hypothetical protein SSO0453 392792 - 393589 + | hypothetical protein SSO0455 393598 - 394158 + | hypothetical protein TERM 143 394404 - 394414 + G 73 -3.2 -5.11063 | overlap 394392 CTACTCCTAGATTAA GAGG AGA CTTC TTTTTATTAGATCCT SSO0456 394148 - 394873 + | hypothetical protein SSO0458 395194 - 394844 - | transcriptional regulator mrp 396395 - 395505 - | ATPase SSO0461 396959 - 396396 - | hypothetical protein SSO0463 397767 - 397123 - | hypothetical protein SSO0464 398309 - 397707 - | hypothetical protein TERM 144 397873 - 397857 - GR 73 -2.2 -5.33026 | TAATTCAAAGAAAAA TAAGCC AACAA GGCTAA AAGGCACTAACGATG TERM 145 397934 - 397945 + gr 76 -5.8 -4.66163 | TGTTAGTTAGAGGTC CAGC TAGA GCTG TTTTTCCCTCAACGT SSO0465 398935 - 398312 - | hypothetical protein SSO0466 399141 - 401654 + | integral membrane protein SSO0468 402570 - 401626 - | hypothetical protein TERM 146 402881 - 402871 - gH 73 -5.4 -4.56597 | opp_overlap 402871 TTCGGTTCCTAAAAA TTCC ATT GGAA TTGTAAAGGATTTTG SSO0467 402506 - 403264 + | hypothetical protein SSO0469 403245 - 404993 + | hypothetical protein SSO0470 406178 - 405273 - | hypothetical protein SSO5909 406229 - 406510 + | hypothetical protein adh-1 407622 - 406507 - | zinc-containing alcohol dehydrogenase SSO0473 407678 - 409012 + | DNA repair protein rad25 TERM 147 409319 - 409329 + G 78 -6.8 -4.67904 | opp_overlap 409317 409319 GAGAGTATTAAAAGA GGTC GGT GACC TTTTTCACGTTGATC SSO0475 408999 - 410456 + | hypothetical protein SSO0477 412068 - 410443 - | hypothetical protein SSO0478 412196 - 413338 + | hypothetical protein SSO0479 413371 - 413919 + | hypothetical protein SSO0480 415324 - 413903 - | histone acethyltransferase, putative TERM 148 414656 - 414675 + g 78 -10.8 -2.71712 | overlap 414655 414658 TGTCTTAAATGCCTC CAGATCCT TATC AGGATCTG ATTTAGGAAGACCAA SSO0481 415401 - 416033 + | hypothetical protein SSO0482 416056 - 416394 + | hypothetical protein SSO0483 416431 - 416748 + | hypothetical protein tatC 416732 - 417616 + | tatC protein (tatC) TERM 149 417726 - 417746 + F 71 -9.1 -2.57344 | overlap 417725 GCCAAAAAATTTATA GTTTGGATA GTC TATCCAGAC ATTATGCCAAGCGTA SSO0485 417750 - 418706 + | ABC transporter SSO0486 418707 - 419693 + | Iron (III) ABC transporter, permease protein (HEMU 1) TERM 150 419955 - 420000 + G 75 -9.9 -2.78384 | opp_overlap 419953 419952 419961 419962 ATCATATATAAAGGA GTTAAATGTGGAGAAGTTTCT TGAG AGAGATTTCTCCACCTTAAGC TCTGGTGAAAGAAAA SSO0487 419671 - 420330 + | Iron (III) ABC transporter, ATP-binding protein SSO0488 421244 - 420471 - | phosphate ABC transporter ATP-binding protein TERM 151 420609 - 420586 - G 72 -8.2 -3.53307 | opp_overlap 420583 420586 AAGAAGGCTACATAA TCAGCAACTC TTGC GACTTGCTGA GGATTATGTGACACA pstS 421390 - 422607 + | phosphate binding periplasmic protein precursor (pstS) pstC 422610 - 423494 + | phosphate ABC transporter permease TERM 152 423733 - 423749 + G 85 -3.7 -5.73339 | AATCTCAGCTCCTAT CTCCA TATTTAC TGGAG TTTTTTTATCGTTCT pstA 423491 - 424309 + | phosphate ABC transporter permease thrC-1 424521 - 425558 + | threonine synthase SSO0494 425555 - 426217 + | hypothetical protein proC 426293 - 427126 + | pyrroline-5-carboxylate reductase SSO0496 427181 - 429337 + | hypothetical protein SSO0497 429334 - 430944 + | hypothetical protein SSO0499 432187 - 430925 - | hypothetical protein TERM 153 432817 - 432807 - g 75 -5.4 -4.78752 | overlap 432815 ATTATAAGCGAAAAA TGCA ATA TGCA AGAGATTTGCCATAA TERM 154 432994 - 432984 - g 74 -4 -5.1675 | TTATGTATTAAAAAA GTTA TAC TAAC TAGGAGGAAAGTTTA SSO0500 432474 - 433139 + | hypothetical protein SSO0501 433844 - 433155 - | hypothetical protein SSO0502 433904 - 434368 + | hypothetical protein TERM 155 434774 - 434750 - f 82 -8.7 -4.03989 | overlap 434773 ACAGAAAAATTTAAA TCTTATTAGGG CTA CCCTAATAATA GTGAGAAAATGATAA TERM 156 435644 - 435682 + G 90 -11.9 -3.51924 | gap 1, opp_overlap 435643 435641 435644 435667 CTAGGAATTAAAGAG GCTACTAGGTTATCTGGT ACAA ACCAGA-AACCGGGTAGC TTATCTGGATACAAA TERM 157 435682 - 435644 - g 74 -9.7 -2.73624 | gap 1, opp_overlap 435644, overlap 435643 435641 435667 CTAGGAATTAAAGAG GCTACTAGGTTATCTGGT ACAA ACCAGA-AACCGGGTAGC TTATCTGGATACAAA SSO0503 434783 - 435706 + | hypothetical protein leuS 435745 - 438549 + | leucyl-tRNA synthetase iunH-1 438552 - 439487 + | purine nucleosidase, putative (iunH-1) SSO5983 439598 - 439738 + | hypothetical protein SSO0506 439809 - 440795 + | hypothetical protein SSO0507 440776 - 441159 + | hypothetical protein TERM 158 442135 - 442153 + T 72 -9 -2.73028 | overlap 442134 442137 TCCTATTAATTTCGC TATACCTT ACT AAGGTATA ATTATCTGCGTCTTT SSO0508 442869 - 442549 - | hypothetical protein SSO0510 443687 - 443316 - | second ORF in transposon ISC1217 SSO0509 443033 - 443440 + | transposon ISC1173 Orf1 SSO0512 444333 - 443596 - | transposon ISC1217 Orf1 SSO0511 444326 - 445135 + | second ORF in transposon ISC1173 SSO0514 445697 - 445284 - | third ORF in transposon ISC1229 TERM 159 445914 - 445886 - g 89 -11 -4.09827 | GAGAATACAACTAAA CCGGCGAAGTTC AACCG GGACTTCGCCAG GTCCGCCCTCAAGAT SSO0515 445862 - 446953 + | transposase ISC1359 SSO6008 447333 - 447076 - | second ORF in transposon ISC1229 SSO0518 447715 - 447338 - | transposon ISC1229 Orf1 TERM 160 447725 - 447751 + r 74 -9.4 -2.75039 | overlap 447716 GACCATTTTTCCCCA GCTGAGGAGAAT ATT ACTCTCCCCAGC TAATTAACCTATATA SSO0519 448625 - 447894 - | hypothetical protein SSO0520 448982 - 448668 - | hypothetical protein SSO0521 449660 - 449346 - | hypothetical protein TERM 161 449410 - 449387 - G 79 -10.4 -3.2827 | opp_overlap 449392 449403, overlap 449390 AATAAATCAATCCAA CAATACCACC GACT AGTGGTATTG GCCATAGTGTAGCAT SSO0522 450920 - 450009 - | hypothetical protein SSO0523 451329 - 450970 - | hypothetical protein SSO6024 451531 - 451340 - | SSV1 virus orf B-129 fragment-like protein SSO0524 451779 - 452717 + | transposase ISC1234 TERM 162 453862 - 453836 - f 87 -11.7 -2.75 | overlap 453833 ATATAAAGCATATTA GTCAGATCTGC GTATT ACAGATCTGAC TGGGGTTGAGGCCGT SSO0525 454795 - 455271 + | transposon ISC1439 Orf1 SSO6050 455268 - 455459 + | second ORF in a partial transposon ISC1439 SSO0526 456133 - 456918 + | hypothetical protein TERM 163 458110 - 458123 + G 70 -6.7 -4.06864 | overlap 458109 ATATCTCTACTGGTG GAGGA GCTC TCCTC TTATTCTTATCTGGA pgk 456948 - 458195 + | phosphoglycerate kinase gap 458188 - 459210 + | glyceraldehyde-3-phosphate dehydrogenase SSO0529 459207 - 459617 + | hypothetical protein glyA 460911 - 459610 - | serine hydroxymethyltransferase TERM 164 460550 - 460569 + g 75 -9.3 -3.18033 | overlap 460548 GTATGACTGACATGG GCACCAG CTTGGA CTGGTGC TATTAATGCCTTATC SSO0531 462184 - 460955 - | 3 hydroxy 3 methylglutaryl coenzyme a reductase SSO0532 462582 - 462181 - | hypothetical protein acaB-1 463667 - 462588 - | Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-1) SSO0535 464719 - 463667 - | hypothetical protein SSO0536 465232 - 464828 - | S-adenosylmethionine decarboxylase proenzyme TERM 165 465500 - 465484 - g 74 -8.1 -3.77846 | opp_overlap 465487, overlap 465487 465498 GAGAATATATTCAAA CAATTAC GAG GTAATTG CGTTCGCAATAACAG SSO0537 465344 - 466165 + | hypothetical protein SSO0538 466963 - 466421 - | hypothetical protein SSO0539 467478 - 467074 - | hypothetical protein SSO0540 468256 - 467825 - | hypothetical protein TERM 166 469839 - 469825 - H 77 -10 -2.57344 | overlap 469824 469827 TATGGTGGGCAGAAG CACGAG AGG CTCGTG GGATCAGGCTAAAGA TERM 167 470879 - 470937 + H 100 -13.9 -2.71637 | gap 1, overlap 470881 470886 AATTGAAAAGACTTA -TGTGCGAGGACCTCGAGGTTCTTTAGG TAGG CATCATGAACCTCGTGGCCCTCGCACAA CTTATACTATTCGTC SSO0541 470914 - 471864 + | transposase ISC1173 SSO0543 474277 - 473189 - | hypothetical protein SSO0544 475011 - 474274 - | hypothetical protein SSO0545 475874 - 475014 - | hypothetical protein TERM 168 476892 - 476878 - H 82 -2.8 -6.07627 | opp_overlap 476880, overlap 476880 AGTTTTAAAAAAAAA GCTGTT CAA AACATC TATATCATACGGGTG pqqE-1 477077 - 478162 + | coenzyme PQQ synthesis protein E (pqqE-1) SSO0548 478181 - 479362 + | multidrug resistance related protein TERM 169 479603 - 479547 - T 100 -16.1 -3.65317 | opp_overlap 479555 479559 479560, overlap 479533 479560 479563 ATTTACAAATCACAA TTCGCAAAGGAAACCAGAATCGCCCTA TCC TAGGGCGATTCAAGATTTCTTTACAAA TTCATGTTATTTAGG TERM 170 479555 - 479595 + T 95 -11.9 -3.62032 | opp_overlap 479547 479560 479563, overlap 479559 479560 ATCACAATTCGCAAA GGAAACCAGAATCGCCCTA TCC TAGGGCGATTCAAGATTTC TTTACAAATTCATGT TERM 171 479559 - 479591 + T 89 -9.1 -4.43877 | opp_overlap 479547 479560 479563, overlap 479555 479560 CAATTCGCAAAGGAA ACCAGAATCGCCCTA TCC TAGGGCGATTCAAGA TTTCTTTACAAATTC TERM 172 479560 - 479590 + T 90 -12.6 -3.25603 | opp_overlap 479547 479560 479563, overlap 479559 479555 AATTCGCAAAGGAAA CCAGAATCGCCCTA TCC TAGGGCGATTCAAG ATTTCTTTACAAATT TERM 173 479590 - 479560 - T 100 -14.8 -4.06903 | opp_overlap 479560 479559 479555, overlap 479547 479563 AATTCGCAAAGGAAA CCAGAATCGCCCTA TCC TAGGGCGATTCAAG ATTTCTTTACAAATT TERM 174 479587 - 479563 - T 100 -17.3 -3.0693 | opp_overlap 479560 479559 479555, overlap 479560 479547 TCGCAAAGGAAACCA GAATCGCCCTA TCC TAGGGCGATTC AAGATTTCTTTACAA SSO0549 482103 - 481138 - | transposase ISC1439 TERM 175 482364 - 482350 - H 73 -7.8 -3.60818 | opp_overlap 482341, overlap 482342 482341 GTAAAATTGGTGAAA CACCAC TGT GTGGCG CCCTCAAATTATAGA SSO0550 482449 - 483393 + | hypothetical protein TERM 176 483819 - 483829 + T 70 -4 -5.06816 | ACAATTTTTAAATCC TTTC TCA GAAA TTTTTGTTACGCAAT SSO0551 484916 - 484290 - | hypothetical protein TERM 177 485039 - 485018 - H 77 -10.2 -2.55551 | opp_overlap 485038, overlap 485031 GATAACCCCAACCCA CATCCGTG GAATAT CACGGATG TGAGGAAATCCCGCA TERM 178 485808 - 485771 - H 71 -8.3 -3.29162 | gap 1, overlap 485774 AAAAGTTGAAAGATA GCAGTGGGGGTGTGGGGG TAT CCCCCTAACCCC-ACAAC GGACCCGCCGGGACT TERM 179 485805 - 485774 - H 83 -10.8 -2.81089 | gap 1, overlap 485771 AGTTGAAAGATAGCA GTGGGGGTGTGGGGG TAT CCCCCTAACCCC-AC AACGGACCCGCCGGG TERM 180 487515 - 487500 - g 70 -2.6 -5.10064 | GGGAACATAGAAAAA GAAATT GGTT AATTCC TCTTAAGGAAGAAAT TERM 181 487895 - 487880 - g 70 -2.6 -5.14163 | gap 1, overlap 487883 AGTGAGGAACAAAAA CTAC-TC TAT GACGTAG TACAGAGAGCAATGA dpo1 486104 - 488752 + | DNA polymerase I SSO0553 489288 - 488848 - | hypothetical protein SSO0554 489770 - 489285 - | ribosomal protein L11 methyltransferase, putative SSO0555 490109 - 489798 - | hypothetical protein pgsA 490144 - 490731 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putataive (pgsA) SSO0557 491633 - 490710 - | DNA primase large subunit TERM 182 490991 - 491005 + g 70 -8.6 -3.06418 | overlap 490993 TATTTTCTATGCATG GAGGAA TTA TTCCTC TCCTTTCTATCAAGC TERM 183 492411 - 492400 - g 73 -5.8 -4.36206 | ACAAGGGATAATAAA TGGG GTAT CCCA GCACCATTTGAAGGA metS 491695 - 493416 + | methionyl-tRNA synthetase atpI 495510 - 493405 - | V-type ATP synthase subunit I TERM 184 495791 - 495769 - g 71 -4.9 -4.6902 | CTATAAGGGGAAAAA TTGATCCAC TTATT GCAGATCAA AGAAAACCTTTAATA atpF 495585 - 495887 + | ATP synthase subunit F (atpF) atpE 495893 - 496477 + | ATP synthase subunit E (atpE) TERM 185 496845 - 496831 - g 70 -5.6 -4.40526 | overlap 496832 GATAGAAAAACCAAA TGGCAC TTT GTGCCT AAAGTTAAGAAAGGA TERM 186 496844 - 496832 - g 71 -9.1 -3.22689 | overlap 496831 ATAGAAAAACCAAAT GGCAC TTT GTGCC TAAAGTTAAGAAAGG TERM 187 497653 - 497669 + G 84 -10.9 -3.53091 | GTTGCTTCTGCAGTA TCTCCAC CTG GTGGAGA TTTCACAGAACCAGT atpA 496480 - 498258 + | V-type ATP synthase subunit A atpB 498258 - 499649 + | V-type ATP synthase subunit B atpD 499646 - 500287 + | V-type ATP synthase subunit D atpG 500274 - 500432 + | ATP synthase subunit G (atpG) atpK 500453 - 500761 + | V-type ATP synthase subunit K proS 500806 - 502251 + | prolyl-tRNA synthetase rps26E 502286 - 502573 + | 30S ribosomal protein S26e SSO0570 502607 - 503623 + | pyridoxine biosynthesis protein SSO0571 503620 - 504222 + | glutamine amidotransferase subunit PdxT TERM 188 504868 - 504851 - g 72 -8.5 -3.61232 | opp_overlap 504851 504850 504853, overlap 504849 TCTTTTATAGAAATA GAGAGAA AAGG TTCTCTC ATTATACAGTTAGGC SSO0572 504260 - 505792 + | ATPase SSO0575 506220 - 505789 - | Holliday-junction resolvase TERM 189 505972 - 505960 - G 73 -5.5 -4.59773 | opp_overlap 505960 TTTGACTCCTAAAAA TAGCG AAC CGCCA CTCTTTCTTGCAAAT ilvC-1 507260 - 506253 - | ketol-acid reductoisomerase SSO0577 507624 - 507232 - | hypothetical protein ilvB-2 509320 - 507602 - | acetolactate synthase catalytic subunit SSO0580 510065 - 509529 - | hypothetical protein SSO0581 510810 - 510007 - | GTP-binding protein SSO0582 510845 - 511822 + | hypothetical protein ubiA-2 512660 - 511812 - | (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase SSO0584 513745 - 512873 - | hypothetical protein TERM 190 513217 - 513231 + g 70 -2.8 -5.10033 | GAATTGCTCCTCCAT GAGTAT CAA AGACTC TTTTATTTATATTAG SSO0585 514164 - 513790 - | S-adenosylmethionine decarboxylase proenzyme SSO6206 514276 - 514563 + | hypothetical protein TERM 191 515389 - 515378 - g 84 -4.4 -5.50313 | GAGAAAATCAAAAAA GAGT ATAG ACTC ACTAACGAATTACCT SSO0586 514553 - 515524 + | hypothetical protein SSO0588 516024 - 515500 - | hypothetical protein TERM 192 518696 - 518677 - g 76 -5.1 -5.04601 | TGGACAAATGAAAAA GTTTATG GACATT CATAAAC CTAAGAGTAGAGAAG leuS 516107 - 518941 + | leucyl-tRNA synthetase SSO0591 519524 - 518925 - | hypothetical protein hisC 519526 - 520656 + | histidinol-phosphate aminotransferase (hisC) hisG 520622 - 521494 + | ATP phosphoribosyltransferase hisA 521496 - 522194 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisB 522187 - 522768 + | imidazoleglycerol-phosphate dehydratase TERM 193 523483 - 523473 - g 81 -5.4 -5.19998 | opp_overlap 523473 ATAATTAAAATAAAA GACT TGA AGTC GTATTTAAGCCAGAA hisF 522765 - 523520 + | imidazoleglycerol-phosphate synthase, cyclase subunit (hisF) TERM 194 524353 - 524343 - g 81 -2.6 -5.73339 | overlap 524347 AGAATGATAAAAAAA TATA TTA TATA ATAAAAACTAAAAAT TERM 195 524372 - 524361 - g 74 -3 -5.25699 | ATTATATAATAAAAA CTAA AAAT TTAG ATGAAGCTATAGAAA hisD 523517 - 524713 + | histidinol dehydrogenase hisE 524697 - 524990 + | phosphoribosyl-ATP cyclohydrolase (hisE) hisH 524987 - 525586 + | imidazole glycerol phosphate synthase subunit HisH hisI 525694 - 525951 + | phosphoribosyl-AMP cyclohydrolase (hisI) SSO0601 525978 - 526376 + | hypothetical protein TERM 196 527399 - 527379 - g 72 -8.4 -3.47403 | TGAATTGATAACGAA TGCTGAAA GTATA TTTCAGCA ACTCGAATTGCCATA serS 526402 - 527775 + | seryl-tRNA synthetase SSO0604 529298 - 527778 - | hypothetical protein SSO0605 530119 - 529769 - | zinc finger protein SSO0606 530592 - 530119 - | transcriptional regulator TERM 197 530493 - 530510 + g 70 -8.5 -3.35934 | overlap 530496 CGTTCATCTCTTCTG CAAGTCT TCTT AGACTTG TTCTCGCATCTCTAG SSO0607 531255 - 530647 - | hypothetical protein SSO0608 531563 - 531252 - | hypothetical protein SSO0609 531859 - 531560 - | hypothetical protein pyrD 532733 - 531861 - | dihydroorotate dehydrogenase (dihydroorotate oxidase) (DHOdehase) (pyrD) pyrC 533902 - 532730 - | dihydroorotase TERM 198 533750 - 533766 + gr 78 -9.5 -3.32268 | opp_overlap 533748 GTGAGTGTGAAGATC TATTGCC CCA GGCAATA TTAATGTACCTTTTG SSO0612 534488 - 533862 - | hypothetical protein pyrI 534976 - 534485 - | aspartate carbamoyltransferase regulatory subunit pyrB 535868 - 534957 - | aspartate carbamoyltransferase catalytic subunit pyrE 535932 - 536519 + | orotate phosphoribosyltransferase pyrF 536506 - 537174 + | orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (pyrF) SSO0617 537335 - 537808 + | hypothetical protein SSO0618 538802 - 537792 - | hypothetical protein SSO0619 539326 - 538820 - | hypothetical protein SSO0620 539696 - 539379 - | hypothetical protein SSO0621 540166 - 539774 - | hypothetical protein TERM 199 540709 - 540698 - gR 77 -3 -5.56263 | opp_overlap 540698 AGGATAAAATAAAAA CATT AGTA AATG TATGTAATGAAGTGT SSO0624 541404 - 540769 - | hypothetical protein SSO0622 540202 - 540831 + | hypothetical protein SSO0625 542374 - 541376 - | GTP-binding protein metS-like 542856 - 542368 - | methionyl-tRNA synthetase TERM 200 543498 - 543485 - gH 79 -6.7 -4.60746 | opp_overlap 543485 543484 TTAAAAACAGTAAAA TCCTC GTAT GAGGA ATTTCTAAAAAGAAT purC 542822 - 543523 + | phosphoribosylaminoimidazole-succinocarboxamide synthase SSO6264 543534 - 543788 + | hypothetical protein purQ 543785 - 544459 + | phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ) purL 544450 - 546579 + | phosphoribosylformylglycinamidine synthase II (FGAM synthase II) (purL) purF-1 546572 - 547924 + | glutamine phosphoribosylpyrophosphate amidotransferase TERM 201 548790 - 548774 - g 71 -5.1 -4.56775 | overlap 548776 ATGCTTTCCTAAAAA TAGTTGG GGT CCAACTT AAGCTAAACCCAATA TERM 202 548788 - 548776 - g 74 -7.7 -3.90048 | overlap 548774 GCTTTCCTAAAAATA GTTGG GGT CCAAC TTAAGCTAAACCCAA purF-2 547921 - 549135 + | glutamine phosphoribosylpyrophosphate amidotransferase TERM 203 549606 - 549594 - g 73 -5.5 -4.64676 | TCAGTCGCAATAAAA CCTGC TGG GCAAG CTGGAGGAAAAGGGG purD 549129 - 550580 + | phosphoribosylamine--glycine ligase purM 550574 - 551545 + | phosphoribosylaminoimidazole synthetase SSO0637 551602 - 552057 + | hypothetical protein TERM 204 553439 - 553417 - gf 71 -7.9 -3.53164 | ATAGTAGGTAGAGAA TCAGAATAT TCTCC ATATTCTGA AAAAATTGCTAGTTA argG 552331 - 553551 + | argininosuccinate synthase argH 553506 - 554885 + | argininosuccinate lyase carA 554869 - 555972 + | carbamoyl phosphate synthase small subunit TERM 205 557044 - 557032 - g 82 -7.7 -4.48333 | overlap 557026 ATATAGTAACTAAAA TCCCA AGA TGGGA TCTAAGCAAGTTTGA carB 555969 - 559124 + | carbamoyl phosphate synthase large subunit TERM 206 559464 - 559441 - g 81 -9.6 -3.68073 | TACCGGACTCAATAA TAGCAGCATC TCCA GATGCAGCTA TGAAAGCATATGAGC rimK-2 559125 - 559973 + | ribosomal protein S6 modification protein (rimK-2) SSO0646 560547 - 559954 - | hypothetical protein hdb-1 560615 - 561589 + | 3-hydroxyacyl-CoA dehydrogenase (hdb-1) SSO0648 562142 - 561606 - | hypothetical protein SSO0649 562795 - 562244 - | hypothetical protein TERM 207 562457 - 562447 - G 70 -6.8 -4.02253 | overlap 562448 CTAAGAATGGAGAAA TGCC ATG GGCA ATAGCAGCTAAGGCT SSO0650 562836 - 563246 + | hypothetical protein SSO0652 564202 - 563750 - | hypothetical protein SSO0651 563330 - 563821 + | hypothetical protein SSO0653 564264 - 565319 + | hypothetical protein paaF-2 566070 - 565312 - | enoyl CoA hydratase (paaF-2) SSO0655 566143 - 566694 + | hypothetical protein ubiA 567546 - 566686 - | prenyltransferase TERM 208 566843 - 566833 - G 70 -3.2 -4.90471 | ACTTAAAACAGAAAA CACT ATA AGCG CTATAAGGCTAATGT thrA/hom 568523 - 567579 - | homoserine dehydrogenase (thrA/hom) TERM 209 568366 - 568380 + g 75 -8.6 -3.48772 | GTCAATTGCTTATCT GGAGAA AAA TTCTCC TTATCTCCGACCATT SSO0658 569194 - 568520 - | hypothetical protein SSO0659 569582 - 569181 - | hypothetical protein tldD 569617 - 570948 + | Zn-dependent protease, tldD protein homolog, putative (tldD) tldE 570941 - 572200 + | Zn-dependent protease bioR 572893 - 572192 - | biotin--(acetyl-CoA carboxylase) synthetase (bioR) TERM 210 572739 - 572723 - GT 71 -6.6 -4.04174 | opp_overlap 572735 572738 TTTTACATAAGTAAA CCAAAG TCCAC CTTTGG GAGAATACCAACTTC SSO0664 573935 - 572859 - | hypothetical protein TERM 211 573471 - 573485 + gH 78 -6.4 -4.64334 | overlap 573464 573467 AATTACATGTTCTAC CCTAGT AGG GCTAGG TTTTGTTGCCAAATT NuoB 574064 - 574576 + | NADH dehydrogenase subunit B (NuoB) TERM 212 574570 - 574554 - T 74 -7.3 -4.04671 | overlap 574551 574548 AGAAGAAGATAAGAA CTCAAGG AGC CCTTAAG ACATAAATGTTATTT SSO0666 575757 - 574555 - | glycerate kinase, putative SSO0668 576098 - 575760 - | hypothetical protein SSO0669 576729 - 576091 - | Iron-dependent repressor SSO0670 577067 - 577486 + | hypothetical protein SSO0671 577462 - 577875 + | hypothetical protein SSO0673 578560 - 577862 - | hypothetical protein SSO0674 579279 - 578557 - | hypothetical protein mobB 579772 - 579263 - | molybdopterin-guanine dinucleotide biosynthesis protein B (mobB) TERM 213 580792 - 580776 - g 74 -5.1 -4.88388 | opp_overlap 580785, overlap 580779 AGAAGTTTATAAAAA GTACTCT TGT AGAGGAC ATCTATGTTAATCAC moeA-1 579806 - 580975 + | molybdopterin biosynthesis protein (moeA-1) mobA 580953 - 581537 + | molybdopterin-guanine dinucleotide biosynthesis protein A (mobA) SSO0678 581925 - 582593 + | hypothetical protein TERM 214 583172 - 583143 - gT 100 -14.5 -3.85114 | opp_overlap 583149 583151 AAATTGCAGAGGAAA CAGACACATGGAT TCAC ATCCATGTATCTG AGACCAGAAGCGAGA TERM 215 583149 - 583166 + GT 71 -8.5 -2.87132 | opp_overlap 583143, overlap 583151 CAGAGGAAACAGACA CATGGAT TCAC ATCCATG TATCTGAGACCAGAA TERM 216 583342 - 583363 + GT 83 -9.5 -3.84451 | opp_overlap 583341 583346, overlap 583346 583361 TCCTACATCGAATAT GAAACTTGC TACC GCAGGTTTC TTTCCATTTAAAGAA trzA 582563 - 583798 + | N-ethylammeline chlorohydrolase, putative (trzA) SSO0680 584650 - 583766 - | hypothetical protein TERM 217 584941 - 584916 - g 70 -3.2 -4.94243 | GCAAAAAAAGTAAAA CCGGATTTGT ACCTTA ACGCATCCGG AGTTCCAATACCACT SSO0681 584670 - 585737 + | hypothetical protein SSO0683 587703 - 585724 - | hypothetical protein gltB 589946 - 587703 - | glutamate synthase (NADPH) subunit alpha (gltB) TERM 218 589090 - 589076 - G 72 -7.8 -3.7941 | TATCCCTTATAACAA CAGGTG TAG CACCCG TCCCTGCTCCATGTC SSO0686 591716 - 590460 - | hypothetical protein SSO0687 594278 - 591723 - | hypothetical protein SSO0688 595011 - 594271 - | ABC transporter, ATP binding protein. TERM 219 595792 - 595768 - g 71 -5.2 -4.60487 | gap 1 TACGACGCTGAAAAA GTATTGAGCTT CCTT AAG-TCAATAC ACGACTTTAACTATG SSO0689 595591 - 596142 + | archaemetzincin-like protein SSO0690 596539 - 596120 - | hypothetical protein TERM 220 596666 - 596644 - R 100 -11.4 -5.19275 | AGTTAGAAAAGAAAA GAAGACTAGT CAA ACTAGTCCTC AACCCTCTTCAAAAT SSO0691 597690 - 596824 - | hypothetical protein TERM 221 597871 - 597881 + r 95 -4 -6.11229 | ATATTAGCCATCACT TATC GTT GATA TTTTTTTCTTTTAAT cmK 598435 - 597866 - | cytidylate kinase rpl34e 598743 - 598477 - | 50S ribosomal protein L34e SSO0693 599206 - 598757 - | hypothetical protein adkA 599798 - 599211 - | adenylate kinase secY 601210 - 599801 - | preprotein translocase subunit SecY rpl15p 601661 - 601227 - | 50S ribosomal protein L15P rpl30p 602140 - 601664 - | 50S ribosomal protein L30P rps5p 602800 - 602147 - | 30S ribosomal protein S5P rpl18p 603383 - 602793 - | 50S ribosomal protein L18P rpl19e 603844 - 603389 - | 50S ribosomal protein L19e rpl32e 604257 - 603841 - | 50S ribosomal protein L32e rpl6p 604799 - 604254 - | 50S ribosomal protein L6P rps8p 605210 - 604809 - | 30S ribosomal protein S8P rps14P 605381 - 605217 - | 30S ribosomal protein S14P rpl5p 605935 - 605387 - | 50S ribosomal protein L5P rps4E 606647 - 605928 - | 30S ribosomal protein S4e rpl24p 607014 - 606655 - | 50S ribosomal protein L24P TERM 222 607026 - 606998 - G 87 -11.9 -3.28712 | opp_overlap 606985 607007 TTCCTTTGTTTAGAA GGTTTAAGAGATA CCA TATCTCTTACACC ACCAATGTAGCGAGA rpl14p 607436 - 607020 - | 50S ribosomal protein L14P rps17p 607782 - 607438 - | 30S ribosomal protein S17P rpl29AB 608269 - 608048 - | 50S ribosomal protein L29 rps3p 608955 - 608266 - | 30S ribosomal protein S3P rpl22p 609430 - 608957 - | 50S ribosomal protein L22P rps19p 609859 - 609437 - | 30S ribosomal protein S19P TERM 223 609746 - 609760 + g 70 -8.6 -2.97171 | overlap 609743 CTTTAATGATCTTCT TTGCCT TGA AGGCAA TAATTTGATAAACTC rpl2p 610611 - 609895 - | 50S ribosomal protein L2P rplW 610868 - 610623 - | 50S ribosomal protein L23 rpl4lp 611673 - 610870 - | 50S ribosomal protein L4P rpl3p 612735 - 611680 - | 50S ribosomal protein L3P SSO0720 613583 - 612786 - | hypothetical protein ileS 616492 - 613532 - | isoleucine-tRNA synthetase (ileS) TERM 224 613717 - 613729 + gr 71 -4.9 -4.63107 | opp_overlap 613717 613716, overlap 613717 TAATCTCAATATAAT CTAAA ACA TTTAG TTTTAGTTGTTTCCT TERM 225 615373 - 615383 + gr 74 -6.8 -4.20552 | TGGATTTACCCCAAT CTGG AAT CCAG TTTACTTTCTCTATT TERM 226 616304 - 616318 + gr 76 -7.2 -4.2461 | opp_overlap 616304, overlap 616290 ATCTGCATTGGATAA TGCAAA CTC TTTGCA TTTATTAATGAAAGT leuB 617791 - 616781 - | 3-isopropylmalate dehydrogenase (leuB) SSO0724 618391 - 617804 - | hypothetical protein TERM 227 619211 - 619183 - g 70 -2.5 -5.1286 | overlap 619184 GAAAAATTACAAAAA CGTTGATGATA TTCTGCT TAACATCAACA TGGATAATATAAGTG SSO0725 618401 - 619867 + | hypothetical protein SSO0726 620578 - 619850 - | 2-haloalkanoic acid dehalogenase, putative EF-2 622795 - 620585 - | elongation factor EF-2 TERM 228 622214 - 622228 + g 81 -4.3 -5.33026 | overlap 622205 CACATTTCCAGCTTG TGGAT TAATC ATCCA TTTTTCTTTAAATTC eiF4A 623575 - 622874 - | RNA helicase (ATP dependent)/eIF4A (eiF4A) SSO0730 623977 - 623597 - | prefoldin subunit beta SSO0731 624718 - 624206 - | hypothetical protein rpl37ae 624920 - 624699 - | 50S ribosomal protein L37Ae SSO0732 625755 - 624928 - | exosome complex RNA-binding protein Rrp42 TERM 229 625595 - 625608 + g 76 -2.3 -5.48825 | opp_overlap 625595 CCTAACTTAACTAAA GCAGA ACCA TCAGC TTTTTTTGCGTAATC rph 626504 - 625758 - | exosome complex exonuclease Rrp41 SSO0736 627210 - 626461 - | exosome complex RNA-binding protein Rrp4 SSO0737 627908 - 627207 - | putative RNA-associated protein SSO0738 628651 - 627926 - | proteasome subunit alpha TERM 230 627990 - 627980 - G 70 -6.8 -4.07133 | CATTTTCAGAAATAA CCCA GTC TGGG TTGAGGCATATCCTA SSO0739 629181 - 628750 - | hypothetical protein SSO0740 629716 - 629156 - | hypothetical protein SSO0741 630131 - 629682 - | hypothetical protein rpl15E 630784 - 630134 - | 50S ribosomal protein L15e TERM 231 631940 - 631907 - g 74 -8.3 -3.6692 | opp_overlap 631907 GTCTACTCCAAAAGA TTTAGCTAATGCCAT ACAT ACGGAACTAGCTAAA GGTTTCTTATACGCT SSO0743 630846 - 632051 + | translation-associated GTPase SSO0745 633251 - 632028 - | sugar phosphate nucleotydyl transferase rps3AE 633849 - 633223 - | 30S ribosomal protein S3Ae SSO0747 634552 - 633839 - | hypothetical protein SSO0748 635147 - 634524 - | hypothetical protein ksgA 635695 - 635111 - | dimethyladenosine transferase SSO0750 636378 - 635752 - | hypothetical protein TERM 232 635936 - 635946 + g 84 -3.2 -5.76237 | TCTATATCTTTAAAA CTCT CAA AGGG TTTTTTCTTTCTCTC rpoF 636761 - 636420 - | DNA-directed RNA polymerase, subunit F (rpoF) TERM 233 636802 - 636788 - R 72 -5.7 -4.42238 | CCACTTGAATTAAAA GGAAC TAAAT GTTCC GGCCTAACAATTATC rpl21E 637074 - 636769 - | 50S ribosomal protein L21e SSO0753 638010 - 637594 - | hypothetical protein SSO0754 638754 - 638014 - | hypothetical protein TERM 234 639012 - 638994 - H 77 -9 -3.35679 | CTTCTGCAGTTATAA TGGTAATA ATT TATTACCA AAAACTTCTACTTTA ahcY 639120 - 640448 + | S-adenosyl-L-homocysteine hydrolase SSO0757 641976 - 641071 - | spermidine synthase rpl37e 642161 - 641976 - | 50S ribosomal protein L37e snRNP-2 642415 - 642176 - | small nuclear riboprotein protein (snRNP-2) SSO0758 642880 - 643587 + | peptidyl-prolyl cis-trans isomerase, FKBP-type rotamase gldA 644639 - 643584 - | glycerol-1-phosphate dehydrogenase (gldA) TERM 235 643743 - 643753 + g 79 -3.2 -5.51402 | GTCTTTCGCTTTCAC TGGG AAT CCTA TTTTTTTAAGTCTAT SSO0761 644710 - 646629 + | mRNA 3'-end processing factor, putative SSO6468 647078 - 646857 - | integrase from SSV1 (orf D-335) (fragment) SSO6469 647431 - 647658 + | hypothetical protein SSO0762 648834 - 648346 - | hypothetical protein SSO0763 649460 - 648846 - | hypothetical protein adh-2 650488 - 649487 - | putative alcohol dehydrogenase gatA-1 650696 - 651892 + | glutamyl-tRNA amidotransferase, subunit A (gatA-1) TERM 236 652141 - 652129 - g 72 -7.7 -3.73709 | overlap 652121 ATAAAATCGGAATAA CTACC GCA GGTAG TGTAGCAGATTTACA SSO0766 651906 - 652583 + | proteasome subunit SSO0767 652597 - 653070 + | hypothetical protein rfc 653092 - 654084 + | replication factor C small subunit rfcL 654081 - 655298 + | replication factor C large subunit moaC 655744 - 655295 - | putative molybdenum cofactor biosynthesis protein C cdc6 657223 - 655982 - | cell division control protein 6 SSO0773 657777 - 657259 - | hypothetical protein SSO0772 657759 - 658349 + | hypothetical protein SSO0774 658336 - 660396 + | minichromosome maintenance protein MCM SSO0775 660952 - 660623 - | hypothetical protein SSO0776 661462 - 660962 - | hypothetical protein radA-like 661980 - 661453 - | DNA repair protein radA homolog (radA-like) SSO0778 662013 - 662546 + | hypothetical protein TERM 237 662576 - 662562 - g 71 -7.2 -3.83881 | AAAAAGAACAGATAA TACAAG GGC CTTGTA CAATAAAAGTTTTAG SSO0779 662543 - 663625 + | hypothetical protein tmK-1 663613 - 664182 + | thymidylate kinase (tmK-1) SSO0781 664516 - 664160 - | hypothetical protein SSO6503 664567 - 664836 + | hypothetical protein TERM 238 665681 - 665707 + G 83 -9.4 -3.97406 | TCTATTTTATTTATC GTCTCGCTTTGG AAT CTGGGGCGAGAC TTTCTGAAATTTTGA SSO0782 665401 - 666081 + | SSV1 integrase fragment homolog (orf D-335) SSO0783 666677 - 666288 - | hypothetical protein SSO0784 667260 - 666652 - | hypothetical protein SSO0785 667951 - 668595 + | hypothetical protein SSO0786 668738 - 670138 + | amino acid specific permease SSO0787 671608 - 670643 - | transposase ISC1439 SSO0788 671864 - 672922 + | hypothetical protein SSO0789 672919 - 673809 + | hypothetical protein TERM 239 674215 - 674193 - g 95 -10.6 -4.5852 | TAAGTGAAACTAAAA GACCAGTGGA AAT TTCACTGGTC CCAGATGAGGAGAGC argE-1 674105 - 674659 + | acetylornithine deacetylase ArgE SSO0791 675976 - 674909 - | glycosyltransferase TERM 240 677223 - 677209 - gH 73 -6.4 -4.24569 | overlap 677206 GAAAAAGAAGAAGAA GGAAAG AAA CTTCCC TCAGTAGTATCGATG SSO0792 677071 - 677490 + | hypothetical protein SSO0793 677448 - 677852 + | hypothetical protein SSO0794 678988 - 677873 - | transposase ISC1476 TERM 241 679024 - 679046 + r 100 -11.2 -4.19927 | overlap 679038 GTTTAAATAGCTTTA CCCTGCCCCT AGA AGGGGCGAGG TTTGTCTCTCATTTT SSO0795 680596 - 679721 - | hypothetical protein SSO0796 681300 - 680593 - | hypothetical protein SSO0797 681478 - 682593 + | ORF in partial transposon ISC1913 SSO0798 683090 - 682698 - | hypothetical protein SSO0799 683778 - 683080 - | hypothetical protein TERM 242 683867 - 683887 + H 93 -11.1 -4.02051 | ATCTGGTGGGCAGTC GGGTGGTCC AGA GAACCACCC TTGTTTAAATTCGTG SSO0800 683888 - 684199 + | hypothetical protein TERM 243 684434 - 684412 - f 100 -11.2 -5.1971 | ATTAAAAAGGAAAAA CCTCGCCCCT TCT AGGGGCAGGG TAAAGCTATTTAAAC SSO0801 684470 - 685837 + | transposase ISC1476 SSO0802 687242 - 687691 + | partial transposase in ISC1190 SSO0803 687582 - 687905 + | partial transposase in ISC1190 SSO6566 688381 - 688085 - | partial transposase in ISC1225 TERM 244 689107 - 689133 + r 83 -11 -2.88375 | overlap 689104 689117 ACGGCCTACACCCCA GTCAGATCTG TATTACT CAGATCTGAC TAATATGTTTTATAT SSO0804 689974 - 689456 - | hypothetical protein SSO0805 690535 - 690131 - | hypothetical protein TERM 245 690872 - 690855 - R 76 -3.5 -5.39681 | ACAAGCAAATAAAAA CAAAACA GCTG TGTTTTA AGAACCATGCACTTT SSO0806 691417 - 691118 - | hypothetical protein SSO0807 691470 - 692135 + | hypothetical protein SSO0808 694151 - 693360 - | hypothetical protein TERM 246 694795 - 694809 + H 93 -10 -4.23528 | overlap 694791 ATATAGGAGCAGGGA TTGGGG ATT CCCCAA TTTACTTTTCCATTG TERM 247 694964 - 694954 - H 80 -5.4 -5.31855 | TAGTAAGAATAAAAA CCAA GGA TTGG CAAAAACTGAAATAC TERM 248 695881 - 695865 - g 81 -2.9 -5.76633 | overlap 695868 TGAGACAGAAAAAAA GTACGAC GTC GTCATCC ATTTGGCAGCTAGAC galE-2 695680 - 696612 + | UDP-glucose 4-epimerase (galE-2) TERM 249 697233 - 697216 - g 75 -5.7 -4.87665 | TTTTAGCGACAAAAA TTTCATT TATT AATGAAA TAGCGAATTTGTGTG ugd 696609 - 697838 + | UDP-glucose 6-dehydrogenase (ugd) TERM 250 697912 - 697902 - g 70 -5.4 -4.47183 | opp_overlap 697902 CAGCATCTAAAGAAA TTCC TAA GGAA ATGTTTCCTATCCCT SSO0813 697868 - 698608 + | UTP-glucose-1-phosphate uridylyltransferase TERM 251 699063 - 699077 + G 73 -7.1 -4.09739 | ATATACATGCATGAT GGTCG ACTTA CGACC TTTTACGGGGATTCC SSO0814 699058 - 699834 + | hypothetical protein SSO0816 699834 - 700166 + | hypothetical protein SSO0817 700750 - 700409 - | hypothetical protein TERM 252 701121 - 701135 + G 86 -10 -4.23528 | overlap 701117 ATATAGGGGCAGGGA TTGGGG ATT CCCCAA TTTACTTTTCCATTG TERM 253 701478 - 701494 + G 78 -6.6 -4.55295 | opp_overlap 701478 TAAAAGTTGAGCACA CCCTAA AGAAC TTAGGG TTTATTTATGCAAAG SSO0818 700784 - 701518 + | hypothetical protein SSO0819 701525 - 702574 + | hypothetical protein SSO0820 703540 - 702575 - | hypothetical protein SSO0821 703579 - 704502 + | hypothetical protein SSO0822 705065 - 704511 - | hypothetical protein SSO0823 705734 - 705264 - | hypothetical protein SSO0825 708023 - 705741 - | hypothetical protein SSO0826 708392 - 708093 - | hypothetical protein SSO0827 709052 - 708600 - | hypothetical protein TERM 254 708875 - 708886 + g 71 -4.4 -4.74518 | CTAAGAAAACTACCA CATC ACCA GATG TTTCTTTTAGTGCTT TERM 255 708993 - 709005 + g 78 -7.7 -4.24745 | opp_overlap 708992 AGCTTGATCAAAATT GGCTA CGA TAGCC TTTGTATTAATCCTA TERM 256 709175 - 709190 + H 71 -7.6 -3.41602 | opp_overlap 709174 709175 ATGAGTTAATTAAAT GGTCTA GATC TAGACC TTCTGCTGAAATAAA TERM 257 709676 - 709686 + G 70 -5.4 -4.42464 | CCATTAATGAGCGTA GAGA ATA TCTC TTTCTTTGGAGAATT SSO0828 709667 - 709972 + | hypothetical protein SSO0829 710062 - 710967 + | hypothetical protein rfbB-1 712834 - 711881 - | dTDP-glucose 4,6-dehydratase (rfbB-1) SSO0831 713865 - 712831 - | sugar phosphate nucleotydyl transferase rfbD-1 714547 - 713867 - | dTDP-4-dehydrorhamnose reductase (rfbD-1) rfbC-1 715269 - 714739 - | dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-1) SSO0834 715707 - 716276 + | hypothetical protein SSO0836 716790 - 716488 - | partial ORF from ISC1778 SSO0837 717064 - 718473 + | polysaccharide biosynthesis related protein SSO0838 718611 - 719330 + | hypothetical protein SSO0840 720549 - 721523 + | hypothetical protein TERM 258 722495 - 722471 - f 93 -11.3 -3.73146 | opp_overlap 722468 722466, overlap 722472 ACAAATAAACGACAA GCCTCGCCCCT TCT AGGGGCGGGGT AAAGCTATTTAAACT TERM 259 722494 - 722472 - f 100 -14.8 -2.82261 | opp_overlap 722468 722466, overlap 722471 CAAATAAACGACAAG CCTCGCCCCT TCT AGGGGCGGGG TAAAGCTATTTAAAC SSO0842 722533 - 723915 + | transposase ISC1476 SSO0844 724509 - 724198 - | hypothetical protein SSO6659 724884 - 724600 - | hypothetical protein SSO6661 725314 - 725084 - | hypothetical protein SSO6663 725485 - 725327 - | hypothetical protein SSO0845 726456 - 725782 - | hypothetical protein SSO0846 727179 - 727760 + | hypothetical protein SSO0847 727824 - 728192 + | hypothetical protein SSO0848 728189 - 728737 + | hypothetical protein SSO0849 728964 - 729368 + | hypothetical protein TERM 260 729452 - 729426 - f 83 -11 -2.88375 | overlap 729421 729423 ATATAAAACATATTA GTCAGATCTG AGTAATA CAGATCTGAC TGGGGTGTAGGCCGT SSO0850 729570 - 730520 + | transposase ISC1190 SSO0851 732032 - 731109 - | transposase ISC1290 TERM 261 731999 - 732057 + g 70 -8.3 -3.30439 | opp_overlap 731999, overlap 732033 AATGTTCATAGGGAA CCGGGCCGTTGTAGTATTCTATCCA-ATG CTT CATGTGAATCGG-TACTACATCGTCCCGG TTCCCTTTAAGTATT SSO0852 732174 - 732614 + | hypothetical protein SSO0853 732720 - 733019 + | SSV1 integrase fragment homolog (orf D-335) argS 735080 - 733203 - | arginyl-tRNA synthetase TERM 262 734580 - 734566 - G 75 -7.2 -4.30576 | TCTGGATCAGGAAAA CCTAAA AGT TTTAGG CCGTAAATTAGAACT SSO6687 735135 - 735338 + | hypothetical protein SSO0858 735325 - 735717 + | hypothetical protein SSO0860 736262 - 736633 + | hypothetical protein thsA 738301 - 736622 - | thermosome subunit alpha TERM 263 737268 - 737286 + g 76 -7.5 -4.09963 | CCTAAGTCTTCGGGA GTAGCAT CTTTA ATGCTAC TTATTATTCTTGCAC SSO0865 739923 - 739093 - | hypothetical protein SSO0863 738414 - 739154 + | hypothetical protein SSO0866 740287 - 739961 - | hypothetical protein SSO0867 741216 - 740476 - | hypothetical protein TERM 264 740835 - 740845 + g 86 -5.4 -5.36441 | TGTCATCTTTTTTCT CAAC TTT GTTG TTTTTTGTCTGACGA SSO0869 742371 - 741301 - | hypothetical protein TERM 265 741444 - 741434 - G 78 -5.4 -4.89393 | TAAAGCTTAGAAAAA GTAG AGA CTAC GATAAGATCATCTTT SSO0870 742985 - 742365 - | hypothetical protein argF 743017 - 743940 + | ornithine carbamoyltransferase SSO0872 745159 - 743933 - | hypothetical protein SSO0873 745781 - 745122 - | hypothetical protein asd-1 746833 - 745781 - | aspartate-semialdehyde dehydrogenase TERM 266 746201 - 746211 + g 75 -5.4 -4.79752 | TAACATTTTATTTAT TTCC TTA GGAA TTTTCTCTTCTTCCC akH 748166 - 746826 - | aspartokinase (akH) thrC-2 749340 - 748150 - | threonine synthase TERM 267 748535 - 748548 + g 70 -3.1 -4.90079 | TTTTCTATGAAATCT GGAGA ATCT TTTCC TTTTATTATTGCGGT TERM 268 748965 - 748979 + g 78 -10 -3.38522 | opp_overlap 748946 748961 748964, overlap 748963 TTGCAGCATAAGCAG CTGCAG AAG CTGCAG TATTTCCAGTGGATG TERM 269 749602 - 749623 + G 76 -4.5 -5.18357 | opp_overlap 749604, overlap 749604 GTTAAAAATTATGAG AATTGGAAA ATAG TTTCCAATA TTTTTTACTCAATTG TERM 270 749604 - 749621 + G 75 -7.1 -4.2131 | opp_overlap 749604, overlap 749602 TAAAAATTATGAGAA TTGGAAA ATAG TTTCCAA TATTTTTTACTCAAT SSO0879 749413 - 750879 + | hypothetical protein SSO6716 751135 - 750854 - | hypothetical protein SSO0881 751217 - 751882 + | hypothetical protein TERM 271 752936 - 752954 + G 75 -9.6 -3.28712 | opp_overlap 752936 TCATAGTTCAAGCTA GGCCAGAA ACT TTCTGGTC TTCTAAAAGGAAAGA ppsA-1 751957 - 754356 + | phosphoenolpyruvate synthase SSO0886 755694 - 754612 - | hypothetical protein SSO0887 755751 - 756056 + | acylphosphatase trpB 756108 - 757385 + | tryptophan synthase subunit beta trpA 757372 - 758109 + | tryptophan synthase subunit alpha trpD 758096 - 759133 + | anthranilate phosphoribosyltransferase (trpD) trpF 759126 - 759740 + | phosphoribosyl anthranilate isomerase (trpF) trpE 759718 - 760983 + | anthranilate synthase component I trpGD 760984 - 761571 + | anthranilate synthase component II trpC 761575 - 762321 + | indole-3-glycerol phosphate synthase (trpC) aspB-2 762340 - 763548 + | aspartate aminotransferase valS 766090 - 763562 - | valyl-tRNA synthetase TERM 272 766256 - 766266 + GH 79 -6.8 -4.55287 | opp_overlap 766256 AAACTTTTGGTATAA GGAG ATT CTCC TTTTATATAGATGGC TERM 273 766523 - 766535 + GH 73 -3.3 -5.12971 | opp_overlap 766523 TATTGGAATTTAATA CCCGT TAT ACCGG TTTTTATTGGATATT SSO0898 766078 - 767073 + | hypothetical protein SSO0900 767033 - 767422 + | hypothetical protein TERM 274 767560 - 767534 - g 71 -5.2 -4.58395 | gap 1, overlap 767536 GTGAGCCGGTAAAAA TAGGAGCGTCA TACATT TG-CGCTCCCA ATCAAGATACTCTAC SSO0901 767419 - 767742 + | hypothetical protein SSO0902 768017 - 767703 - | hypothetical protein SSO6759 768232 - 768014 - | hypothetical protein SSO0903 768342 - 768863 + | hypothetical protein ogG 768805 - 769428 + | N-glycosylase/DNA lyase serA-1 769622 - 770602 + | D-3-phosphoglycerate dehydrogenase (serA-1) SSO0906 770599 - 771720 + | soluble hydrogenase, small subunit rpoK 771711 - 771998 + | DNA-directed RNA polymerase subunit K topA 772004 - 774010 + | DNA topoisomerase III SSO0909 775182 - 774064 - | AAA ATPase family protein SSO0910 775977 - 775198 - | hypothetical protein SSO0911 776793 - 775996 - | hypothetical protein SSO6778 776890 - 777141 + | hypothetical protein SSO0913 778397 - 777138 - | enolase TERM 275 778562 - 778582 + G 80 -6.1 -4.96435 | TTTGGCTCCTCATCT GGTGGGTTT AAT ATACTCACC TTCTTTTTTTATTGC SSO0914 778428 - 778736 + | hypothetical protein SSO0915 778742 - 779071 + | hypothetical protein SSO0916 779052 - 779477 + | Signal peptidase, putative SSO0917 780996 - 779470 - | glycine dehydrogenase subunit 2 SSO0918 782347 - 780980 - | glycine dehydrogenase subunit 1 gcvT 782382 - 783422 + | glycine cleavage system aminomethyltransferase T gcvH 783434 - 783847 + | glycine cleavage system protein H SSO0921 783840 - 784595 + | hypothetical protein SSO0922 784602 - 784970 + | hypothetical protein TERM 276 785984 - 785997 + G 73 -5.3 -4.63486 | opp_overlap 785984 785974 785972 AAATGCTCTAAATAA TTCCA TGTG TGGAA TTTTCTTAGAGGACT SSO0923 785043 - 786044 + | hypothetical protein SSO0925 786061 - 786549 + | ABC transporter TERM 277 788198 - 788188 - g 70 -6.8 -4.04318 | GGTATAGACGAGAAA GAGG CCA CCTC AATGCTAGTATTAGG SSO0927 786874 - 788313 + | hypothetical protein SSO0928 788300 - 789469 + | hypothetical protein TERM 278 789711 - 789678 - f 72 -7.4 -3.85242 | gap 2, opp_overlap 789681 AAATATTTAGAAGAA GCCGCCGG-CG-GGAT TCGA ACCCGCGACCGCCGGC TATCTAGGCAGTAAC nrd 790181 - 792706 + | ribonucleotide reductase (nrd) SSO0931 792761 - 793129 + | hypothetical protein SSO0934 794162 - 793122 - | hypothetical protein gatB-2 796136 - 794235 - | glutamyl-tRNA(Gln) amidotransferase subunit E ansA 797463 - 796129 - | glutamyl-tRNA(Gln) amidotransferase subunit D TERM 279 796231 - 796254 + g 73 -6.8 -4.32034 | opp_overlap 796227 TTTTTCTAAATCTTG CTCATGTG CAAGTACC CACATGAG TTTTACTAATGCTAC TERM 280 796264 - 796280 + g 79 -10.9 -3.08813 | opp_overlap 796264 CATGAGTTTTACTAA TGCTACC TCT GGTAGCA TATCTTCCAATGGGG TERM 281 796280 - 796264 - G 80 -10.9 -3.15861 | opp_overlap 796264 CATGAGTTTTACTAA TGCTACC TCT GGTAGCA TATCTTCCAATGGGG rps30E 797655 - 797497 - | 30S ribosomal protein S30e SSO0939 797721 - 798959 + | Pre mRNA splicing protein SSO0940 798966 - 799664 + | fibrillarin SSO0941 799669 - 800085 + | hypothetical protein SSO0942 800089 - 801021 + | hypothetical protein SSO0943 800987 - 802123 + | N(2),N(2)-dimethylguanosine tRNA methyltransferase SSO0944 802492 - 802115 - | hypothetical protein TFB-2 803556 - 802675 - | transcription initiation factor IIB SSO0947 803980 - 804876 + | hypothetical protein SSO0949 804848 - 805915 + | hypothetical protein SSO0950 806139 - 806999 + | hypothetical protein tflD 807533 - 806988 - | transcription factor SSO0952 808389 - 807634 - | hypothetical protein SSO0953 808432 - 809205 + | diphthine synthase SSO0954 809187 - 809867 + | hypothetical protein SSO0955 810391 - 809864 - | hypothetical protein SSO0956 811621 - 810524 - | tRNA-modifying enzyme gatA-2 813073 - 811637 - | glutamyl-tRNA amidotransferase, subunit A (gatA-2) TERM 282 812182 - 812209 + g 71 -7.1 -3.93664 | gap 1, overlap 812184 CAATTATGTAATATG CT-GGTAGTGCG TATTC CGCATTACCTAG TTTAGTATCTTCAAT TERM 283 812184 - 812206 + g 76 -9.9 -3.024 | overlap 812182 ATTATGTAATATGCT GGTAGTGCG TATTC CGCATTACC TAGTTTAGTATCTTC gatC 813359 - 813066 - | aspartyl/glutamyl-tRNA amidotransferase subunit C SSO0959 813804 - 815459 + | DNA repair protein rad25 SSO0960 815990 - 815475 - | hypothetical protein TERM 284 815578 - 815556 - G 71 -4.9 -4.68593 | opp_overlap 815556 TCTATTATCTAAAAA GCAGAGT CCAACATTT ACTCTGC CTTTATCTATGCTTA SSO0961 816649 - 816329 - | hypothetical protein SSO0962 817033 - 816731 - | chromatin protein TERM 285 819718 - 819707 - g 76 -4.4 -5.1925 | CTAGAATTGAAAAAA TCTC TGAA GAGA AAATACTATTATCTC topR-2 817144 - 820644 + | reverse gyrase SSO6877 820878 - 820609 - | DNA binding protein SSO10b SSO0965 823791 - 820990 - | ATP-dependent helicase TERM 286 823308 - 823318 + g 73 -6.8 -4.34737 | TTGATAACTGAGTTC CTCG CTT CGAG TTTATTAATTCGTGA SSO0966 824180 - 825628 + | hypothetical protein TERM 287 826370 - 826354 - g 83 -9.5 -3.9941 | GGGGGTATAAGTAAA CACCATA CAA TATGGTG GAATCAATTCAAAGA TERM 288 826516 - 826550 + G 73 -6.4 -4.18488 | GTAACCATCTATGGA GATGCGACAATAATAG TTC CTATTTTGGCCGCGTC TTTATTAAGCTAAAT SSO0967 825625 - 826563 + | putative deoxyhypusine synthase TERM 289 826667 - 826644 - g 95 -12.5 -4.12198 | opp_overlap 826648 826666 CAGAATTCTTTAAAA GGAATCCGG AGCTTG CCGGATTCC CTAATCCAGCTAGGG top6B 826592 - 828184 + | DNA topoisomerase VI subunit B TERM 290 829252 - 829235 - g 74 -8.5 -3.72553 | opp_overlap 829234, overlap 829233 AAGAAGAGATAAACA CTTTCCT ACAT AGGAAAG CTAAATTGGAAATAG top6A 828181 - 829350 + | DNA topoisomerase VI subunit A eiF5A 829696 - 830091 + | translation initiation factor IF-5A srp54 830094 - 831437 + | Signal recognition particle protein subunit SRP54 (srp54) SSO0972 831406 - 832518 + | hypothetical protein SSO0974 832542 - 833411 + | 3-hydroxyisobutyrate dehydrogenase fabG-1 833436 - 834233 + | 3-oxoacyl-(acyl carrier protein) reductase (fabG-1) SSO6901 834345 - 834527 + | hypothetical protein TERM 291 834767 - 834789 + G 71 -7 -3.88442 | overlap 834769 GATCTTTTAGGTATA TGGGCGTCAA GAC TTAACGCCTA TTTAGTGATGTTTTC pyrH 834557 - 835240 + | uridylate kinase SSO6904 835237 - 835521 + | hypothetical protein TERM 292 835714 - 835727 + G 74 -9.5 -2.99649 | opp_overlap 835714 GTATCTATGATAGAA GCCGG TCAT CCGGC TGTATCTCCAGATAT TERM 293 835727 - 835714 - g 78 -9.5 -3.55447 | opp_overlap 835714 GTATCTATGATAGAA GCCGG TCAT CCGGC TGTATCTCCAGATAT leuA-2 835585 - 836970 + | 2-isopropylmalate synthase rpiA 837783 - 837100 - | ribose 5-phosphate isomerase (rpiA) SSO0980 839233 - 838169 - | transposase ISC1217 TERM 294 838347 - 838329 - G 71 -9.6 -2.50994 | overlap 838328 838346 TTCAAGGCCACGAAG CCTGAGTT CCT AACCCAGG TCAAGAAGGACCCAC pyK 840744 - 839386 - | pyruvate kinase (pyK) TERM 295 840311 - 840324 + g 70 -5.3 -4.43844 | opp_overlap 840311 TTTAGATTGACATTA GGAAT ATTT ATTCC TTTTCTCGATAATAA SSO0983 841259 - 840744 - | hypothetical protein SSO0985 842476 - 841379 - | oxidoreductase, putative SSO0986 843159 - 842473 - | hypothetical protein SSO0987 844869 - 843169 - | glycogen synthase SSO0988 846199 - 844856 - | Alpha amylase TERM 296 845639 - 845651 + g 74 -7.7 -3.93009 | opp_overlap 845628 TTTATAGACGTAATT TGGAC TTC GTCCA TTTAAATTTCTATTA SSO0989 846234 - 847502 + | sugar phosphate nucleotydyl transferase SSO0990 847516 - 849384 + | glucan 1,4 alpha glucosidase (glucoamylase) treX-like 849392 - 851026 + | glycogen debranching protein SSO0992 851273 - 852463 + | hypothetical protein SSO0994 852456 - 852767 + | hypothetical protein SSO0995 853197 - 852826 - | hypothetical protein SSO0996 854066 - 853239 - | nicotinate-nucleotide pyrophosphorylase nadB 855526 - 854063 - | aspartate oxidase (nadB) nadA 855569 - 856504 + | quinolinate synthetase SSO0999 856747 - 858180 + | ABC transporter TERM 297 858288 - 858298 + G 86 -8.2 -4.43283 | opp_overlap 858287, overlap 858287 TTGAGTTTTCAAGAT CCCC ATG GGGG TTTCTCTTTATATAA SSO1000 858177 - 859004 + | maltose transport inner membrane protein SSO1001 859006 - 859809 + | sugar ABC transporter SSO1003 859806 - 860780 + | sugar ABC transporter SSO1004 860974 - 862209 + | hypothetical protein SSO1005 862206 - 863093 + | hypothetical protein argE-2 863102 - 864232 + | succinyl-diaminopimelate desuccinylase TERM 298 864519 - 864502 - g 78 -9.9 -3.4594 | CAAAATTAATAGTAA CTGACCT AAAA AGGTCAG AAAACGTTTACGAAA TERM 299 864943 - 864927 - g 70 -8.1 -3.41359 | opp_overlap 864926, overlap 864925 CTGCGAAAATCAATA GAGAAAA TAA TTTTCTC ATCAGTTATAGAATA SSO1008 864330 - 864959 + | hypothetical protein SSO1009 866441 - 865035 - | amino acid specific permease TERM 300 867369 - 867390 + r 76 -6.1 -4.60924 | TTTAATTAGTATTTT TATTTATAA GAAT TTATAAATA TTTTTAAAAGGTTTA SSO1010 868398 - 867403 - | NADH dehydrogenase ilvB-3 870048 - 868399 - | pyruvate dehydrogenase TERM 301 869819 - 869803 - G 70 -8.1 -3.32844 | opp_overlap 869803, overlap 869816 TTTTGCATCGTATAA TCCATTT AAT AAATGGA TTGATCCAGGACCAG TERM 302 870450 - 870424 - R 74 -7.4 -4.08692 | opp_overlap 870431, overlap 870427 GAAGCTCTGTGAAAA CTAGCAATATCA AAA TGATATTACTGG AATTCCTAACCCTAA TERM 303 870557 - 870573 + r 70 -8.1 -3.13475 | opp_overlap 870550 GTCACAAAGGTAATC CGTTATA GAG TATAACG TTACCTATGCCCTTC TERM 304 871534 - 871579 + r 73 -7.7 -3.71848 | gap 3, opp_overlap 871534 871556 871558 871559 AACAATATGTATAAT GCGG-A--TTCCCCCGCGGGAG AAACA CTCCCGCCGGGGAAGGTATCGC TTATTCGTGGAGGGG TERM 305 872083 - 872098 + r 91 -10.4 -4.10657 | opp_overlap 872097 GGCGCCACCCCGAGT GCTCCC GTAA GGGAGC TTTTCCCCGCTCTAC TERM 306 872259 - 872243 - R 88 -11.5 -3.35597 | overlap 872241 GTCACTCCTTAAAGA CCCCGGC TCA ACCGGGG GAATGGGGGTGATAC TERM 307 872469 - 872483 + r 77 -10 -2.78384 | AGGCTAGGTGTCACA TGGGCT TAG AGCCCA TGTGGTGCCGCAGGG TERM 308 873007 - 872987 - R 89 -11.9 -3.16921 | opp_overlap 873004 AGGAATCCCTAGTAA CCGCAGATC AAC AATCTGCGG TGAATACGTCCCTGC TERM 309 873058 - 873080 + r 73 -7.6 -3.6502 | opp_overlap 873063, overlap 873066 CGCTCCACCCGAGTA GGAGAGGGGT GAG GCCCCTTGCC TTTGGGTGGGGGGTC TERM 310 873156 - 873137 - R 72 -9.2 -2.65808 | overlap 873134 AGTCGTAACAAGGTA GCCGTAGG GGAA CCTGCGGC TGGATCACCTCATAG TERM 311 873991 - 873978 - R 77 -8.1 -3.90112 | GTCTCCCGAAGGAAA GAGGC GCGA GCCTC AAGTACGAGGGAGAT TERM 312 875382 - 875367 - R 71 -7.5 -3.53012 | TGGTGGTTGGTGAAA GCCGG GTCCAA CCGGC CGAAGCCCCACTGAA TERM 313 875598 - 875560 - R 74 -9.4 -2.60061 | overlap 875557 ACACCGAGAGAAGAC CCCGTGGAGCTTCACC GCAGCCT GGCGCTGCTCCTCGGG CGCCTATGCGTAGAG TERM 314 875620 - 875638 + r 76 -8.8 -3.55444 | TGCGTAGAGTAGGTG GGAGGGGT CGA ACCCATCC TTTCGGGGATGGGGG TERM 315 875945 - 875929 - R 80 -7.3 -4.57353 | overlap 875933 GGGCATGACAGAAAA GTTACCC CGG GGATAAC AGGGTCGTCGCGGGC TERM 316 875980 - 875945 - R 74 -8.8 -3.29144 | overlap 875933 TTACCCCGGGGATAA CAGGGTCGTCGCGGGC GAGA GCTCCCATCGACCCCG CGGTTTGCTACATCG hoxN 877941 - 876820 - | high-affinity nickel-transport protein (hoxN) cysA-1 878058 - 878894 + | thiosulfate sulfurtransferase SSO1020 879254 - 878898 - | hypothetical protein hycC 881129 - 879264 - | hydrogenase 4 subunit B TERM 317 880618 - 880599 - GR 72 -8.6 -3.0579 | overlap 880598 880601 AAATCCCGCTAAAAT GAGAACTG TACT CAGCTCTC CAAATGCCATGAAAA hycG 881611 - 881006 - | formate hydrogenlyase subunit 7 (hycG) TERM 318 881166 - 881176 + gr 88 -5.4 -5.43866 | TTGGGTTCTGGCATT GCTT CAT AAGC TTTTTTTAACACTTC hycE 882783 - 881608 - | formate hydrogenlyase subunit 5 (hycE) TERM 319 882035 - 882054 + g 72 -9.2 -2.72761 | opp_overlap 882033, overlap 882032 GCATCGTAAGCGAGT CCAGCAGC TCTT GCAGCTGG TCCTATACTGTTTTC SSO1024 884102 - 882780 - | hydrogenase 4 subunit F SSO1025 884749 - 884108 - | hypothetical protein hycD 885719 - 884757 - | formate hydrogenlyase subunit 4 (hycD) SSO1027 886455 - 886865 + | hypothetical protein SSO1028 886897 - 887595 + | hypothetical protein fdhF-1 887650 - 889623 + | formate dehydrogenase Alpha subunit (fdhF-1) fabG-2 889657 - 890400 + | 3-oxoacyl-(acyl carrier protein) reductase (fabG-2) SSO1031 890439 - 891647 + | hypothetical protein SSO1032 891622 - 892419 + | Sulfate ABC transporter, permease protein TERM 320 893557 - 893575 + G 72 -8.2 -3.5627 | ATGTAGGTAACGTTA CTAGTTAC ACT GTAACTGG TTTGAAAGATGGTAT TERM 321 893735 - 893746 + G 71 -4.4 -4.83615 | opp_overlap 893732, overlap 893732 893734 893738 TGTTACATTGAATTG GTTG CCTC CAAC TTTTTCTGGAGGCTA SSO1033 892443 - 894620 + | hypothetical protein TERM 322 895034 - 895044 + T 74 -4 -5.1675 | ACAAACCTTATTACC TCTA TAA TAGA TTTTTTAATAACTAC SSO1034 896043 - 895429 - | ABC transporter, ATP binding protein. SSO1035 897130 - 896036 - | hypothetical protein SSO1036 897495 - 897163 - | hypothetical protein TERM 323 897414 - 897446 + g 78 -8.6 -3.71649 | opp_overlap 897417, overlap 897417 897438 TAGCAGCTACCACAT TAACTGGCGGAATA CCACC TATTTCTCCAGTTA TTTGGAGTTTAGGCA SSO1038 899520 - 898750 - | hypothetical protein SSO1039 900575 - 899337 - | tRNA CCA-pyrophosphorylase SSO1040 901119 - 900535 - | hypothetical protein adkA-like 901138 - 901704 + | adenylate kinase related protein (adkA-like) SSO1042 901697 - 902134 + | hypothetical protein SSO1043 903010 - 902135 - | hypothetical protein SSO1044 903951 - 903007 - | hypothetical protein SSO1045 904832 - 903948 - | ribose phosphate pyrophosphokinase SSO1046 904866 - 905645 + | GTPase pcnA-2 905678 - 906418 + | proliferating cell nuclear antigen SSO1048 906384 - 907376 + | DNA primase small subunit TERM 324 907758 - 907778 + G 71 -6.9 -3.9693 | opp_overlap 907757 907756 907772 ACCTATGAGAGAAGC CTTGCCATT AAT AATAGCAAG TTATTTAACTCCCTA SSO1049 907366 - 907821 + | hypothetical protein rpl44e 907818 - 908105 + | 50S ribosomal protein L44e rps27e 908102 - 908302 + | 30S ribosomal protein S27e eiF2A 908305 - 909105 + | translation initiation factor IF-2 subunit alpha SSO7115 909102 - 909272 + | H/ACA RNA-protein complex component Nop10p SSO1052 911556 - 909262 - | oligosaccharyl transferase STT3 subunit (B5) (integral membrane protein 1) TERM 325 912522 - 912504 - g 77 -10.3 -2.82482 | opp_overlap 912504, overlap 912503 GAATAGCAGTTAAAC CTTGGGG TGTAT CCCCAAG TACTATTTCAACTTA TERM 326 912504 - 912522 + G 77 -10.3 -2.86011 | opp_overlap 912504 912503 GAATAGCAGTTAAAC CTTGGGG TGTAT CCCCAAG TACTATTTCAACTTA TERM 327 913378 - 913388 + G 70 -6.8 -4.14615 | overlap 913384 TAAATGGATTCCTTG GACC TAC GGTC TTTTCACCGGTTTTT SSO1053 911795 - 913708 + | hypothetical protein TERM 328 915285 - 915341 + G 84 -12.4 -2.89921 | opp_overlap 915298, overlap 915287 915340 GTGGTTTATTAACTG GAGTTTTTGCAAATCCCGCAGTCACA CAGTT TGTGGCTCCGGGATTAACAGGAGCTC TCTATGGGAATTGGT TERM 329 915287 - 915339 + G 74 -9.2 -2.99947 | opp_overlap 915298, overlap 915285 GGTTTATTAACTGGA GTTTTTGCAAATCCCGCAGTCACA CAGTT TGTGGCTCCGGGATTAACAGGAGC TCTCTATGGGAATTG TERM 330 915328 - 915298 - g 80 -9.7 -3.53811 | opp_overlap 915287 915285 TGGAGTTTTTGCAAA TCCCGCAGTCACA CAGTT TGTGGCTCCGGGA TTAACAGGAGCTCTC SSO1054 914084 - 915613 + | ammonium transporter SSO1055 916860 - 917306 + | hypothetical protein TERM 331 917413 - 917383 - g 86 -9.8 -4.0641 | opp_overlap 917388 CGGGACTGAGATAAA GGTAGGCTTATTAG GCT CTGATAACCCTACC CCAGAGGAATTCTGC SSO1056 917303 - 917719 + | hypothetical protein SSO1057 917747 - 918091 + | hypothetical protein SSO1059 918722 - 918081 - | hypothetical protein lplA-like1 919945 - 919106 - | lipoate protein ligase A SSO1061 920393 - 919947 - | glycine cleavage system protein H TERM 332 921126 - 921140 + G 73 -7.2 -4.05788 | overlap 921119 CCCTATATCTACTTA GTAGTT TAT AACTAC TTTCATTTAACAAAG SSO1062 920502 - 921533 + | hypothetical protein SSO1063 922732 - 921818 - | hypothetical protein purE 922767 - 923243 + | phosphoribosylaminoimidazole carboxylase catalytic subunit (purE) purK 923215 - 924312 + | phosphoribosylaminoimidazole carboxylase ATPase subunit modA 924309 - 924665 + | molybdenum transporter SSO1067 925195 - 924674 - | intracellular proteinase SSO1068 925269 - 925568 + | hypothetical protein SSO1069 925904 - 927847 + | amino acid transporter SSO1070 928697 - 928014 - | partial transposase ISC1229 SSO1072 930694 - 929426 - | second ORF in transposon ISC1778 TERM 333 930120 - 930134 + g 73 -8.6 -3.29511 | AGAAAGTTCACTGGT GTTACC CAC GGTAAC TTGTAACGAAATGGC SSO1073 931112 - 930672 - | transposon ISC1778 Orf1 TERM 334 931077 - 931088 + g 74 -3 -5.3658 | opp_overlap 931070, overlap 931068 931065 931077 TGATGATACTCTAGC GTAA AGTA TTAC TTTTCTTTTTCTAAT TERM 335 931077 - 931093 + g 72 -3.7 -4.94902 | opp_overlap 931070, overlap 931068 931065 931077 TGATGATACTCTAGC GTAAAGT ATT ACTTTTC TTTTTCTAATAATTC TERM 336 932076 - 932106 + H 77 -9.9 -2.70574 | overlap 932075 932078 CGACGGCCTCAACCC TAGCCAGATCTAT ATTGC ATAGATCTGACTA ATATGTTTTATATAA TERM 337 932184 - 932210 + H 74 -9.4 -2.75252 | overlap 932181 GACCATGTTTTCCCA GCTGAGGAGAAT ATT ACTCTCCCCAGC TAATGTTAAAGTGCT SSO1074 932640 - 933317 + | hypothetical protein SSO1075 933302 - 933703 + | hypothetical protein SSO1076 933741 - 934313 + | hypothetical protein fumC 935677 - 934340 - | fumarate hydratase SSO1078 935746 - 936423 + | ABC transporter, ATP binding subunit SSO1079 936420 - 938927 + | hypothetical protein TERM 338 938994 - 939008 + G 73 -8.6 -3.30441 | opp_overlap 938990 TTAGGGCAATACTTA CTATCC TTG GGATAG TTGTCGGACCTGCTA SSO1080 938924 - 940120 + | hypothetical protein SSO1082 940585 - 940121 - | MarR family transcriptional regulator TERM 339 940643 - 940658 + H 73 -7.6 -3.59405 | CGTCTTCATTCTCTC TTCTCG TAAA CGAGAA TTATATCCTAATTTT gctA 940676 - 941482 + | glutaconate CoA-transferase, subunit A (gctA) gctB 942194 - 941457 - | glutaconate CoA-transferase, subunit B (gctB) SSO1086 942230 - 942550 + | hypothetical protein SSO1087 943503 - 942577 - | hypothetical protein SSO1089 944810 - 943500 - | hypothetical protein SSO1088 944625 - 945254 + | hypothetical protein SSO1090 945251 - 946060 + | Serine/threonine phosphatase type 1 TERM 340 946295 - 946337 + G 73 -8.6 -3.44222 | TAATGGCAATAAGGT TTCCTTCATCACTTTTTCAT CAA ATGTGAACGTGATTAAGGAA TTCGTTGATCCTTTA SSO1091 946071 - 947213 + | hypothetical protein SSO1092 947754 - 947203 - | hypothetical protein SSO1093 949358 - 948084 - | hypothetical protein SSO1095 951909 - 949342 - | aconitate hydratase SSO1096 951999 - 952727 + | hypothetical protein SSO1098 952759 - 953226 + | hypothetical protein SSO1100 953584 - 953883 + | hypothetical protein SSO1101 954474 - 954091 - | transcriptional regulator SSO1102 954677 - 954997 + | hypothetical protein SSO1103 955002 - 956138 + | transport membrane protein (permease) SSO1104 956466 - 956119 - | hypothetical protein SSO1105 956857 - 956435 - | glycine cleavage system protein H SSO1106 956910 - 957404 + | hypothetical protein SSO1107 957454 - 957804 + | hypothetical protein SSO1108 957883 - 958260 + | transcriptional regulator Lrs14 SSO1109 958388 - 958753 + | hypothetical protein SSO1110 959071 - 958736 - | transcriptional regulator SSO1111 959568 - 959104 - | hypothetical protein TERM 341 959139 - 959153 + g 86 -4.4 -5.62219 | ATACTGGGGGAGGAT TATTTA CAT TAAATA TTTTTTTCATATATT TERM 342 959733 - 959745 + G 73 -6.3 -4.431 | CATATACTAGCAGGT GAAGA AGC TCTTC TTTTATCAGTCGCTA lplA-like2 959676 - 960710 + | lipoate protein ligase A SSO1114 960707 - 961612 + | hypothetical protein bioB 961609 - 962664 + | biotin synthase (bioB) SSO1116 962667 - 963506 + | hypothetical protein TERM 343 964270 - 964225 - gTf 70 -6.3 -4.2231 | overlap 964241 964245 964246 AATGATCAGCTAAAA TCCTTAGACCTAACAACTAAT TCCT ATAACCTATTAGGTCTTAGGA TAAGAAGAATAAAGA SSO1117 963442 - 964488 + | acetoin utilization protein SSO1119 965712 - 964453 - | hypothetical protein SSO1118 965645 - 966097 + | hypothetical protein SSO1120 966616 - 966101 - | glutaredoxin-like protein TERM 344 966455 - 966475 + g 70 -2.6 -5.11937 | GTAAACCCTATCTCC CCTCTT AACTTTAAC AAGAGG TTTTTTACAATTATT SSO1121 966981 - 966613 - | hypothetical protein TERM 345 966915 - 966925 + gr 71 -6.8 -4.10744 | opp_overlap 966915, overlap 966898 TTCCCTCATTAACTA GGGA AAA TCCC TTCTTCTTTAAATAA pdhD-1 968284 - 966944 - | dihydrolipoamide dehydrogenase (pdhD-1) SSO1125 968696 - 968295 - | hypothetical protein SSO1126 968854 - 969285 + | hypothetical protein SSO7239 969297 - 969539 + | hypothetical protein hdrC-1 969608 - 970450 + | heterodisulfide reductase, subunit C (hdrC-1) hdrB-1 970658 - 971971 + | heterodisulfite reductase, subunit B (hdrB-1) hdrA 972029 - 973135 + | heterodisulfide reductase, subunit A (hdrA) TERM 346 973753 - 973809 + G 100 -17.7 -3.12666 | overlap 973753 973769 ATTATGCTACTCTGC TGGCTGTAGATAGGAAGG-GAGGTGGG CTTTA TCCATCTCACCTTTCTA-CTACAGCCA TGGTTTTAGGTCTAA SSO1133 973251 - 973862 + | hypothetical protein hdrC-2 973849 - 974541 + | heterodisulfide reductase subunit C (hdrC-2) hdrB-2 974538 - 975455 + | heterodisulfide reductase, subunit B (hdrB-2) SSO1136 975477 - 976139 + | hypothetical protein SSO1137 976191 - 976706 + | hypothetical protein SSO1138 976832 - 978007 + | Na(+)/H(+) antiporter SSO1140 979136 - 977985 - | hypothetical protein SSO1141 982992 - 979183 - | protease related protein SSO1142 984278 - 983163 - | transport protein, permease SSO1143 985140 - 984427 - | hypothetical protein SSO1144 985957 - 985130 - | ABC transporter, ATP binding protein trpB-like 986048 - 987337 + | tryptophan synthase subunit beta SSO1146 987576 - 988091 + | hypothetical protein SSO1147 988135 - 988437 + | hypothetical protein SSO1148 989463 - 988438 - | arginine deiminase SSO1149 989941 - 989495 - | hypothetical protein TERM 347 991177 - 991190 + G 73 -5.3 -4.56914 | AGGGAGGTTTATCCA GTTGA TTAT TCAAC TTTTAATTTCGATAC SSO1150 990748 - 991818 + | hypothetical protein SSO1151 991959 - 993335 + | hypothetical protein SSO1152 993328 - 994557 + | hypothetical protein TERM 348 995318 - 995305 - gf 70 -5.3 -4.40963 | opp_overlap 995305, overlap 995302 AGTTCCTAAAAATAA CGTTA TAGG TAACG TTGGTGATGGTTGGA acd-1 994637 - 995728 + | Acyl-CoA dehydrogenase (acd-1) SSO1154 995700 - 996191 + | monoamine oxidase regulatory protein SSO1155 996526 - 997824 + | hypothetical protein acd-like1 998610 - 997810 - | Acyl-CoA dehydrogenase related protein (acd-like1) TERM 349 998544 - 998570 + g 76 -10.4 -2.60808 | opp_overlap 998551, overlap 998540 998551 TATTCCACTCCCTAC TTAAGAACTCAT TAA ATGAGTTTTTAA TCAGTTCTAAATCCT TERM 350 998551 - 998563 + g 78 -6.3 -4.77759 | opp_overlap 998551, overlap 998544 998540 CTCCCTACTTAAGAA CTCAT TAA ATGAG TTTTTAATCAGTTCT SSO1157 999297 - 998656 - | hypothetical protein TERM 351 999126 - 999140 + g 70 -2.8 -5.2015 | opp_overlap 999128, overlap 999128 GATCTACGTGTGAAT GAGTAA ATA TTACGC TTTTTATCTTGTTAG SSO1159 1000148 - 999552 - | haloacetate dehalogenase SSO1160 1001082 - 1000636 - | hypothetical protein SSO1161 1001473 - 1001045 - | hypothetical protein SSO1162 1002143 - 1003558 + | multidrug resistance protein SSO1163 1004641 - 1003829 - | hypothetical protein SSO1164 1004866 - 1005948 + | transposase ISC1250 SSO1167 1006955 - 1005978 - | hypothetical protein SSO1168 1008058 - 1006952 - | sugar ABC transporter SSO1169 1008945 - 1008055 - | sugar ABC transporter TERM 352 1008148 - 1008181 + g 78 -11.2 -2.69998 | gap 1, opp_overlap 1008147 1008148, overlap 1008147 1008144 1008143 TATCCCCATTATAAC TGCTCCAGC-TGCAA ATATA TTGTATGCTGGAGCA CTTGCTTGATTTAGT SSO1170 1009840 - 1008947 - | sugar transport protein TERM 353 1009803 - 1009816 + g 81 -3.9 -5.46129 | opp_overlap 1009803 AAAATATAAAAAAGG GAAAA TAAC TTTTC TTTTTTCATTTCTTG SSO1171 1011405 - 1009834 - | maltose ABC transporter TERM 354 1010496 - 1010484 - G 72 -7.7 -3.68324 | overlap 1010482 GATTGGCAACAAATA GCTGA CCT TCAGC ACCTCCAGCACCAGT TERM 355 1014239 - 1014221 - g 74 -8.2 -3.76486 | opp_overlap 1014224, overlap 1014224 ATCTAAACAAATCAA CAAGTTCC ATG GGAACTTA CCTGTTGGCGTTAGT TERM 356 1014236 - 1014224 - g 74 -7.7 -3.99091 | opp_overlap 1014224, overlap 1014221 TAAACAAATCAACAA GTTCC ATG GGAAC TTACCTGTTGGCGTT SSO1172 1011604 - 1014312 + | hypothetical protein SSO1173 1015573 - 1014320 - | amino acid permease-like protein SSO1174 1016533 - 1015610 - | Na(+)/Ca(2+) exchanging protein related SSO1175 1016716 - 1018521 + | hypothetical protein SSO1176 1018917 - 1018510 - | Holliday-junction resolvase aspB-3 1018989 - 1020059 + | aspartate aminotransferase (aspB-3) TERM 357 1021175 - 1021226 + T 100 -15.4 -3.7046 | opp_overlap 1021176 1021179 1021184, overlap 1021176 CTTGTTGACTATTTA ATGAGGGAATTGGTATTCTCATGA ACCC TCATGGTAATACCGATTCCCTCGC TTTAAACCTTTTTTC TERM 358 1021225 - 1021176 - T 90 -12.3 -3.09516 | opp_overlap 1021176 1021175, overlap 1021179 1021184 TTGTTGACTATTTAA TGAGGGAATTGGTATTCTCATGA ACCC TCATGGTAATACCGATTCCCTCG CTTTAAACCTTTTTT TERM 359 1021176 - 1021225 + T 100 -18.9 -2.81191 | opp_overlap 1021176 1021179 1021184, overlap 1021175 TTGTTGACTATTTAA TGAGGGAATTGGTATTCTCATGA ACCC TCATGGTAATACCGATTCCCTCG CTTTAAACCTTTTTT TERM 360 1021222 - 1021179 - T 89 -12.6 -2.76263 | opp_overlap 1021176 1021175, overlap 1021176 1021184 TTGACTATTTAATGA GGGAATTGGTATTCTCATGA ACCC TCATGGTAATACCGATTCCC TCGCTTTAAACCTTT SSO1178 1021932 - 1021402 - | hypothetical protein SSO7348 1022279 - 1022010 - | hypothetical protein SSO1180 1023256 - 1022567 - | second ORF in transposon ISC1439 SSO7351 1023528 - 1023274 - | transposon ISC1439 Orf1 TERM 361 1024108 - 1024092 - gH 72 -3.7 -4.94902 | opp_overlap 1024103, overlap 1024097 1024098 1024101 GAATTATTAGAAAAA GAAAAGT AAT ACTTTAC GCTAGAGTATCATCA TERM 362 1024108 - 1024097 - gH 74 -3 -5.3658 | opp_overlap 1024103, overlap 1024092 1024098 1024101 ATTAGAAAAAGAAAA GTAA TACT TTAC GCTAGAGTATCATCA SSO1181 1023932 - 1024519 + | transposon ISC1778 Orf1 TERM 363 1024553 - 1024529 - gT 84 -10.8 -3.09671 | overlap 1024533 ATTTGAACCGGAAGA GGAATACGTG CACTT CACGTACTCC ATCAAGAATAGTGAG TERM 364 1025062 - 1025048 - gT 74 -8.6 -3.29511 | opp_overlap 1025048 GTCATTTCGTTACAA GTTACC TTG GGTAAC TCCATTAAACTTTCT SSO1183 1026743 - 1025670 - | inorganic phosphate transporter SSO1182 1024488 - 1025756 + | second ORF in transposon ISC1778 TERM 365 1027171 - 1027187 + FH 74 -6.7 -4.20707 | opp_overlap 1027170 1027171 AGACGAAGAGAAAAT GTATTAA TTC TTAATAC TCTTTTTTCCTCCAA entB-like1 1027341 - 1027898 + | isochorismatase related protein (entB-like1) SSO1185 1028879 - 1027899 - | hypothetical protein SSO1186 1029738 - 1028929 - | hypothetical protein TERM 366 1029940 - 1029969 + H 85 -8.1 -4.59773 | ATCATTATACCACTC CATTTTAACCTTA AACA TAAGATTAAAATG TTTTTGGGGGTAAAG TERM 367 1030193 - 1030212 + H 73 -7.8 -3.61178 | opp_overlap 1030193 GACGGGGGTTCAAAG GGGGCGGA AAAC TTCGCCTC TTTGAGATGGATCCC TERM 368 1031388 - 1031402 + G 84 -11.4 -3.26471 | ATCTTACGTGGATCG GGGTCG GAG CGACCC TTAGTGTGGAGCTCC SSO1187 1030272 - 1031453 + | transposase ISC1316 TERM 369 1031642 - 1031669 + F 71 -5.6 -4.62772 | opp_overlap 1031642 GGTTTTAAGTCATAA CTGTTAGCCCTA AGAG TATGGATAACAG TTTCTTTAATTTGAA SSO1188 1032029 - 1033321 + | phytoene dehydrogenase related protein TERM 370 1033532 - 1033544 + T 80 -6.3 -4.78121 | opp_overlap 1033531 GATTACAAGAGAATC GGAAA AAT TTTCC TTATTTTTTACTTTT SSO1189 1034540 - 1033728 - | hypothetical protein SSO1190 1035201 - 1034566 - | hypothetical protein TERM 371 1035169 - 1035186 + g 72 -8.5 -3.54771 | CTTTTTGAGCTGTAG GTTAAGG TAAT CCTTAAC TTGTGATATTGTCAA SSO1191 1035808 - 1035182 - | thymidylate kinase related protein tmK-2 1036424 - 1035783 - | thymidylate kinase (tmK-2) SSO1193 1037674 - 1036421 - | exopolyphosphatase (metaphosphatase), putative sixA 1038160 - 1037675 - | phosphohistidine phosphatase (sixA) SSO1196 1038738 - 1039328 + | hypothetical protein TERM 372 1040195 - 1040215 + G 74 -9.8 -2.59482 | opp_overlap 1040197, overlap 1040191 GTGATTGGCGTCAAG GATCTGGT GAACA ACCAGATC TACGTTAGTGCTTTC SSO1197 1039799 - 1040275 + | transposon ISC1217 Orf1 SSO7389 1040300 - 1040428 + | second ORF in transposon ISC1217 TERM 373 1040454 - 1040428 - f 88 -11.7 -2.88375 | overlap 1040425 ATATAAAACATATTA GTCAGATCTGC GTATT ACAGATCTGAC TGGGGTTGAGGCCGT SSO1198 1040570 - 1041202 + | partial transposase ISC1190 SSO1200 1042165 - 1041182 - | transposase ISC1048 SSO7399 1041878 - 1041723 - | transposase ISC1048 SSO1202 1043697 - 1042798 - | transposase ISC1058 TERM 374 1044147 - 1044165 + G 71 -9.6 -2.50994 | overlap 1044135 1044146 GTGGGTCCTTCTTGA CCTGGGTT AGG AACTCAGG CTTCGTGGCCTTGAA SSO1203 1043804 - 1044325 + | third ORF in transposon ISC1217 TERM 375 1044492 - 1044482 - g 75 -5.4 -4.81843 | opp_overlap 1044482 AATAAGGAAAATAAA CAGT TAT ACTG TAATATAATGAACGT SSO1204 1044350 - 1044694 + | hypothetical protein porB-1 1045613 - 1044711 - | 2-ketoisovalerate ferredoxin oxidoreductase subunit beta porA-1 1046758 - 1045601 - | pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-1) porD-1 1047028 - 1046762 - | pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-1) porG-1 1047593 - 1047021 - | pyruvate synthase gamma chain (Pyruvic-ferredoxin oxidoreductase gamma chain) (porG-1) cutA-1 1047747 - 1049813 + | carbon monoxide dehydrogenase, large chain (cutA-1) SSO1210 1050913 - 1050458 - | hypothetical protein SSO1212 1051857 - 1050958 - | transposase ISC1058 SSO1213 1052479 - 1051991 - | hydrogenase formation/expression factor related protein TERM 376 1052868 - 1052848 - H 77 -9.1 -3.30798 | overlap 1052846 GATAATGAACGAAGA CACCTTAAC CAT ATTAAGGTG AATAACTCCCTAAAT SSO1214 1053475 - 1054089 + | carbonic anhydrase SSO1215 1054868 - 1054107 - | hypothetical protein TERM 377 1054512 - 1054522 + g 73 -5.4 -4.67011 | opp_overlap 1054504 TAATGTAGAGAAATT TTCC TCA GGAA TTTTTGCATAAGATT SSO1216 1056452 - 1055184 - | second ORF in transposon ISC1778 TERM 378 1055878 - 1055892 + gr 74 -8.6 -3.2963 | AGAAAGTTCACTGGT GTTACC CAC GGTAAC TTGTAACGAAATGGT SSO1217 1057008 - 1056421 - | transposon ISC1778 Orf1 TERM 379 1056586 - 1056600 + gH 81 -10 -3.16055 | overlap 1056579 TACTATTTCACAGTT GTGTGC TTT GCACAC TTCCTCCAGGATTTC TERM 380 1056832 - 1056843 + gH 74 -3 -5.3658 | opp_overlap 1056823 1056820, overlap 1056823 1056820 1056832 AGATGATACTCTAGC GTAA AGTA TTAC TTTTCTTTTTCTAAT TERM 381 1056832 - 1056848 + gH 72 -3.7 -4.94902 | opp_overlap 1056823 1056820, overlap 1056823 1056820 1056832 AGATGATACTCTAGC GTAAAGT ATT ACTTTTC TTTTTCTAATAATTC TERM 382 1057809 - 1057837 + G 73 -7.4 -4.03234 | opp_overlap 1057808 1057809 1057825, overlap 1057811 AGAACTATAGAGAAC GTTGAGGCTGCA ATAAG TGCAGCCTACAC TTTATATAAGGGCGA SSO1218 1057452 - 1058930 + | methylmalonate-semialdehyde dehydrogenase SSO1219 1059650 - 1058964 - | hypothetical protein TERM 383 1059935 - 1059920 - g 71 -4.7 -4.59773 | overlap 1059930 GTGGAGTTTCAAAAA CCTCT TAAAAT AGAGG ATCTAGATGTTCCTA adh-3 1059884 - 1060972 + | zinc-containing alcohol dehydrogenase TERM 384 1061590 - 1061572 - g 76 -2.4 -5.46706 | opp_overlap 1061584 ACGCTAAAAGAAAAA GTATCGCA ATA TCCAATAC CCTTTGGTCCTATAG SSO1221 1061044 - 1061850 + | hypothetical protein TERM 385 1061888 - 1061878 - g 70 -5.4 -4.39568 | opp_overlap 1061878 AGTGAGATAGGAAAA CTTG AAA CAAG TTTAATGGAGTGCTT TERM 386 1062325 - 1062311 - g 76 -5 -4.90778 | overlap 1062313 GCTATCCAAAGAAAA TAGCTA AAA TAGCCA TGACTAAATTACATC SSO1222 1061851 - 1062744 + | hypothetical protein SSO1223 1063813 - 1062806 - | catechol 2,3-dioxygenase (metapyrocatechase) SSO1224 1063917 - 1064336 + | hypothetical protein todA 1064502 - 1065716 + | toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component, (todA) tmoA 1065792 - 1066598 + | toluene-4-monooxygenase system protein A. amino end fragment (tmoA) TERM 387 1067165 - 1067138 - g 82 -10.8 -3.32819 | gap 1, overlap 1067141 TATATACGTGGAGAA GGA-CTCTAAATG TTT CATTTAGAGGTCC TACGCCTGATGAGAG TERM 388 1067161 - 1067141 - g 79 -11.3 -2.83449 | overlap 1067138 ATACGTGGAGAAGGA CTCTAAATG TTT CATTTAGAG GTCCTACGCCTGATG tmoA 1066732 - 1067664 + | toluene-4-monooxygenase system protein A. carboxy end fragment (tmoA) SSO1229 1067670 - 1068104 + | hypothetical protein tmoC 1068109 - 1068513 + | toluene-4-monooxygenase system protein C. (tmoC) tmoD 1068491 - 1068838 + | toluene-4-monooxygenase system protein D. (tmoD) tmoE 1068850 - 1069980 + | toluene-4-monooxygenase system protein E. (tmoE) SSO1234 1069977 - 1070438 + | hypothetical protein SSO7469 1070887 - 1070594 - | second ORF in transposon ISC1491 SSO1237 1071342 - 1070884 - | transposon ISC1491 Orf1 SSO1238 1071441 - 1072424 + | transposase ISC1048 SSO1240 1072414 - 1072989 + | transposon ISC1491 Orf1 SSO7475 1072986 - 1073279 + | second ORF in partial transposon ISC1491 TERM 389 1074086 - 1074068 - g 83 -6 -5.07275 | opp_overlap 1074067 1074068 TTATATACATAAAAA GGTTAAAG ATC CTATAACC CTTTCGAGGCTTTTC SSO1243 1073916 - 1074308 + | hypothetical protein SSO7483 1074921 - 1074751 - | third ORF in transposon ISC1217 TERM 390 1074821 - 1074797 - G 72 -8 -3.66874 | opp_overlap 1074797 1074814 TTAATCCCACCCAAA GACTGATAAA TATTT TTTATCAGCC TTGATATCCTATTGG SSO7486 1075199 - 1074996 - | second ORF in transposon ISC1217 TERM 391 1075399 - 1075371 - g 89 -11 -4.09827 | GAGAATACAACTAAA CCGGCGAAGTTC AACCG GGACTTCGCCAG GTCCGCCCTCAAGAT TERM 392 1075547 - 1075533 - g 79 -7.2 -4.38154 | overlap 1075521 AGAGCGTTGAGAAAA TTGAAC GCG GTTCAA GTTGAGGACGTGAGG SSO1245 1075347 - 1076399 + | transposase ISC1359 SSO1250 1077174 - 1076566 - | transposon ISC1217 Orf1 SSO1251 1077949 - 1077608 - | hypothetical protein SSO1252 1078293 - 1077940 - | hypothetical protein SSO1253 1078983 - 1079435 + | hypothetical protein citE 1080216 - 1079407 - | Citryl-CoA lyase beta subunit homolog (citE) SSO1255 1080885 - 1080247 - | transcriptional regulator TERM 393 1081529 - 1081511 - H 73 -8.2 -3.55219 | AATTGCATTAGATAA GTAACTTG ACA CAAGCTAC AACTAGGGTTATATT SSO1256 1081711 - 1083105 + | microtubule binding protein, putative SSO1258 1084759 - 1083623 - | mandelate racemase/muconate lactonizing family protein garD 1085925 - 1084762 - | galactarate dehydratase, putative (garD) SSO1260 1086209 - 1085910 - | hypothetical protein TERM 394 1087254 - 1087239 - R 70 -8.2 -3.06183 | TCCATCCTTACGGAA GGGGAC ATTC GCCCCC TTAACCTCCATTAAG SSO1261 1087954 - 1087403 - | hypothetical protein TERM 395 1087712 - 1087722 + g 70 -5.4 -4.37721 | CTTAATGCAAATTAC TTCC CTA GGAA TTTCTATGTTTTCTT SSO1262 1088496 - 1087960 - | hypothetical protein SSO1263 1089388 - 1088795 - | second ORF in transposon ISC1078 SSO1264 1089807 - 1089349 - | transposon ISC1078 Orf1 TERM 396 1089585 - 1089604 + gr 77 -9.3 -3.30969 | TCTTTTCTAAGATTC GGACGAG CTTTTC CTCGTCC TTCAGTTTCGTGGGT SSO1265 1090317 - 1089847 - | hypothetical protein SSO1266 1091146 - 1090286 - | ABC transporter, ATP binding protein glmS-2 1092941 - 1091187 - | glutamine-fructose-6-phosphate transaminase (isomerizing) (glmS-2) TERM 397 1092318 - 1092330 + g 73 -6.3 -4.44461 | opp_overlap 1092317, overlap 1092321 ATCATTCCAAGAGAT TACTG CCA CAGTA TTTTCTGGCATTATT SSO1269 1093467 - 1092976 - | hypothetical protein SSO1270 1094852 - 1093458 - | hypothetical protein alaS-like2 1095298 - 1094846 - | hypothetical protein TERM 398 1095040 - 1095026 - G 90 -8.6 -4.57581 | opp_overlap 1095028 1095032 AGCTGAAATAAGAAA GAGATC GTA GATCTC ATCTCCATATTTCCT SSO1272 1095334 - 1096341 + | hypothetical protein SSO1273 1096402 - 1099122 + | hypothetical protein dppB-1 1099140 - 1100186 + | oligo/dipeptide transport, permease protein (dppB-1) dppC-1 1100189 - 1101541 + | oligo/dipeptide transport, permease protein (dppC-1) dppD-1 1101531 - 1102481 + | oligo/dipeptide transport, ATP binding protein (dppD-1) dppF-1 1102450 - 1103427 + | oligo/dipeptide transport, ATP binding protein (dppF-1) SSO1278 1104530 - 1103805 - | hypothetical protein TERM 399 1104111 - 1104121 + g 72 -4 -4.92757 | AATGTTCGTTATTAT TTGA CTT TCAA TTTTATTATTACTCA dppF-2 1104819 - 1104508 - | oligo/dipeptide transport, ATP binding protein. carboxy-end fragment. (dppF-2) TERM 400 1104696 - 1104714 + g 75 -9.6 -3.12668 | opp_overlap 1104695 CTGGATCTGGAACAG GCACTGCT TGC AGTAGTGC TTGAGTGTAAGGATG SSO1280 1105057 - 1106022 + | transposase ISC1439 dppF-2 1106948 - 1106211 - | oligo/dipeptide transport, ATP binding protein. amino-end fragment. (dppF-2) TERM 401 1106422 - 1106397 - G 86 -8.3 -4.49316 | ATCAGCAACAATAAA CTTGGGCCTTA ATAA TAAAGCCCTAG CTACTACAACTCTTT dppD-2 1107909 - 1106938 - | oligo/dipeptide transport, ATP binding protein. (dppD-2) dppC-2 1109516 - 1107906 - | oligo/dipeptide transport, permease protein (dppC-2) TERM 402 1108116 - 1108102 - G 70 -8.6 -3.08015 | TTAAGTATTCCAATA CCTAGA AAG TCTAGG GCTGACTCTATACCT dppB-2 1110514 - 1109513 - | oligo/dipeptide transport, permease protein (dppB-2) TERM 403 1109907 - 1109893 - G 80 -8.6 -3.94471 | ACCCGAAAATAAAGA CTTGGA TTA TCCAAG GAAGCCAATATACCT SSO7578 1111161 - 1111412 + | transposon ISC1212 Orf1 SSO1285 1111496 - 1111933 + | second ORF in transposon ISC1212 SSO1286 1112085 - 1112411 + | partial transposase ISC1250 SSO1287 1112517 - 1113728 + | hypothetical protein SSO1288 1113843 - 1116323 + | hypothetical protein SSO1289 1118058 - 1116700 - | hypothetical protein TERM 404 1117561 - 1117579 + g 70 -8.2 -3.31779 | overlap 1117555 1117560 1117557 1117562 1117577 TAGTCTAGCGTTACT TCCAGTAA CTA TTACTGGG TATATTTCCCTTATT TERM 405 1117562 - 1117578 + g 72 -9.5 -2.57983 | overlap 1117555 1117561 1117560 1117557 1117577 AGTCTAGCGTTACTT CCAGTAA CTA TTACTGG GTATATTTCCCTTAT TERM 406 1117993 - 1117973 - G 78 -5.5 -5.00616 | opp_overlap 1117973 1117987 TTTGGGGTTAAAAAA CTGTCAA TATTTGT TTGACAG TCTACTGTTTTACTG SSO1290 1118643 - 1119617 + | hypothetical protein SSO1291 1120947 - 1119607 - | hypothetical protein TERM 407 1119715 - 1119697 - G 89 -10.4 -4.09321 | opp_overlap 1119700, overlap 1119700 TATCCAACCAAAGAA CAAGTACA CAA TGTACTTG TTAAACGTTGGTAAA TERM 408 1120851 - 1120840 - G 73 -7.2 -4.14541 | TAGTAAGGAGATAAA GGGC GCTT GCCC ACCAAATGAGATAAA SSO1292 1121786 - 1121211 - | hypothetical protein SSO1293 1122730 - 1123044 + | hypothetical protein TERM 409 1123674 - 1123700 + G 76 -6 -4.6955 | opp_overlap 1123681 1123694, overlap 1123676 1123694 TAGCGTTGAATACTG CATTATATCTTT CCA AGAGATATAAGG TTTTATATATTGATA SSO1294 1123604 - 1124347 + | hypothetical protein SSO1297 1126654 - 1124576 - | hypothetical protein SSO1296 1124400 - 1124699 + | hypothetical protein SSO1298 1127120 - 1126665 - | hypothetical protein TERM 410 1126986 - 1126971 - G 82 -7.6 -4.44548 | opp_overlap 1126971 1126967 TAGATCCAAGTAAAA CGGAAT TTTA ATTCCG TTAATTTCCACATTT nodC-like 1128389 - 1127121 - | N-acetylglucosaminyltransferase related protein (nodC-like) adh-4 1130912 - 1129863 - | zinc-containing alcohol dehydrogenase SSO1302 1131932 - 1131243 - | second ORF in transposon ISC1439 TERM 411 1131378 - 1131354 - G 77 -10.1 -3.25906 | opp_overlap 1131360, overlap 1131352 1131360 CAGAACCGTATAATA GAGGAACAAGA AGA TCTTGTTACTC AACTTCCTAACATAC SSO7635 1132204 - 1131950 - | transposon ISC1439 Orf1 TERM 412 1132175 - 1132211 + g 73 -8.8 -3.33492 | AGCGAGGGACTTCAG CTCCGTTATGGATACT TGTAT GGTTTGCATAACGGAG TTATGGAGTCCCTCG SSO1303 1132569 - 1133720 + | mandelate racemase/muconate lactonizing family protein SSO1305 1135116 - 1133725 - | metabolite transport protein TERM 413 1135038 - 1135025 - G 78 -6.7 -4.71426 | CCTGCATCAAGAAAA TCTGC TAAA GCAGA TAGGATTGTCCACCT SSO1306 1135923 - 1135219 - | hypothetical protein TERM 414 1135370 - 1135392 + g 87 -12.2 -3.23393 | overlap 1135363 1135368 TCTAGGTTTATTCTT CTAGGATATT CAT AATATCCTAG TCTTATGGCGTGAAG TERM 415 1137544 - 1137557 + G 70 -6.7 -4.08394 | GGAGATTGACGATTG TTCCC CATT GGGAA TTTTAGACGAAATCT SSO1307 1137335 - 1138072 + | hypothetical protein SSO1308 1138280 - 1139629 + | hypothetical protein TERM 416 1139976 - 1139963 - g 70 -5.3 -4.44461 | AACAATTCCAGAAAA TAGCT AAGG AGCTA ACAAAGAGTTTAAAG TERM 417 1140262 - 1140276 + G 73 -6.4 -4.24404 | TACATAGATGTTGAT CCTACT AGA GGTAGG TTTTACAATTTAGAT SSO1309 1139614 - 1140414 + | hypothetical protein TERM 418 1140633 - 1140652 + G 71 -7.2 -3.97388 | opp_overlap 1140633, overlap 1140634 ATGAGAAGGTAATTA TTCAAGTG AATA CACTTGAG TTTCTGATAGACTCT SSO1310 1140404 - 1140805 + | hypothetical protein TERM 419 1140951 - 1140965 + T 71 -8.6 -2.79968 | overlap 1140950 AATCTTATGAGGTTA GGAAGT TTC ACTTCC CTTTAAAATTAGGTC paaF-3 1141761 - 1140958 - | enoyl CoA hydratase (paaF-3) SSO1312 1142557 - 1141772 - | ring oxydation complex/ phenylacetic acid degradation related protein SSO1313 1142643 - 1143347 + | ring oxydation complex/ phenylacetic acid degradation related protein TERM 420 1143947 - 1143961 + G 74 -4.2 -4.96646 | opp_overlap 1143943 GGCTGAAAAGACGTC GCCAAA CGA TATGGC TTTTTGGTTATATAC acsA-1 1143417 - 1145006 + | Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-1) paaX 1145079 - 1145879 + | repressor in ring oxydation complex/ phenylacetic acid degradation pathway related protein (paaX) (paaX) SSO1316 1146469 - 1147014 + | transposon ISC1316 Orf1 SSO3256 1146950 - 1147540 + | second ORF in transposon ISC1316 SSO1317 1147633 - 1148598 + | transposase ISC1439 SSO7675 1148854 - 1149075 + | second ORF in transposon ISC1316 SSO1318 1149938 - 1149105 - | hypothetical protein SSO1319 1150824 - 1149931 - | antibiotic ABC transporter ATP-binding protein TERM 421 1151728 - 1151701 - g 76 -6.4 -4.38748 | gap 1, opp_overlap 1151706 GGGATAAACAAACAA GAGA-ATTACGGC GTT GCTGTAATATCTC ATCAAGAAATAAGCT SSO1320 1150918 - 1151769 + | hypothetical protein TERM 422 1151757 - 1151776 + F 83 -4.4 -5.63517 | overlap 1151773 1151774 CTTAAGCGAGATATT GAAAGAAT TATA ATTTTTTC TTTTTTCTTTAAAAA SSO1321 1152137 - 1152748 + | hypothetical protein ilvC-2 1153746 - 1152745 - | ketol-acid reductoisomerase (ilvC-2) TERM 423 1153764 - 1153753 - R 77 -4.4 -5.28176 | TTTATCCATAAAAAA GTAC TGGA GTAC GAAAATAAAAATATG thiC-1 1155090 - 1153789 - | thiamine biosynthesis protein ThiC SSO1325 1155470 - 1156642 + | hypothetical protein SSO1327 1158419 - 1156629 - | hypothetical protein SSO1328 1160713 - 1159034 - | restriction endonuclease related protein TERM 424 1160760 - 1160776 + r 70 -8.1 -3.16858 | overlap 1160759 1160756 TGTTCTTTCATTATC TTATCGA TCT TCGATAA ATTATTTTCATCTGA SSO1329 1161943 - 1160738 - | hypothetical protein TERM 425 1162404 - 1162390 - H 79 -8.6 -3.81575 | opp_overlap 1162385 1162390, overlap 1162384 GGGAAAAAATTATAA CTTCTG GGG CAGAAG TTGAATTCTGGGGCA TERM 426 1162390 - 1162404 + H 74 -8.6 -3.23274 | opp_overlap 1162390 1162384, overlap 1162385 GGGAAAAAATTATAA CTTCTG GGG CAGAAG TTGAATTCTGGGGCA SSO1330 1162424 - 1162912 + | hypothetical protein SSO3257 1162936 - 1163484 + | hypothetical protein SSO7710 1164087 - 1164377 + | hypothetical protein TERM 427 1164857 - 1164843 - f 82 -8.6 -3.9951 | AAACACTTAAAAAGA GAAGTG TGT CACTTC AAGGAGGTCAAAGGA SSO1331 1165248 - 1167062 + | hypothetical protein SSO1332 1168136 - 1167837 - | hypothetical protein TERM 428 1168258 - 1168270 + r 80 -6.3 -4.74801 | AGTAATAATACATCT CTACT ATT AGTAG TTTTTCATCCAATTG aceA/icl 1169653 - 1168340 - | isocitrate lyase TERM 429 1170079 - 1170066 - R 71 -3.1 -5.24129 | opp_overlap 1170059 1170066 TTTTTTTACAAAAAA GAAGA GTCC CCTTC ATTTTTTGTTTAAAA aceB/mas 1172595 - 1170115 - | malate synthase, putative (aceB/mas) TERM 430 1171470 - 1171480 + g 72 -8.2 -3.61517 | overlap 1171460 CTACTGGAGCAGCAT CGGC TTC GCCG TTCTTCGCCCCAGCT TERM 431 1173246 - 1173230 - g 72 -3.7 -4.94902 | overlap 1173235 GAATTATTAGAAAAA GAAAAGT AAT ACTTTAC GCCAGAGTATCATCT TERM 432 1173246 - 1173235 - g 74 -3 -5.3658 | overlap 1173230 ATTAGAAAAAGAAAA GTAA TACT TTAC GCCAGAGTATCATCT SSO1335 1173070 - 1173648 + | transposon ISC1778 Orf1 TERM 433 1173690 - 1173668 - g 89 -12.1 -3.32647 | TTCCAACCAGAGGAA GAGTACGTG CACTT CACGTACTC CATCAAGAACGACAA SSO1336 1173626 - 1174897 + | second ORF in transposon ISC1778 SSO1338 1175015 - 1176085 + | sugar ABC transporter permease TERM 434 1176137 - 1176152 + T 79 -3.3 -5.68489 | opp_overlap 1176137, overlap 1176140 TGGGAATGCAACTTA GTTGA AAAAAG TCAAC TTTTTTCTTCTTCTC TERM 435 1176140 - 1176159 + T 83 -8 -4.15932 | opp_overlap 1176137, overlap 1176137 GAATGCAACTTAGTT GAAAAAAG TCAA CTTTTTTC TTCTTCTCTTTTTCT acsA-2 1176930 - 1176148 - | Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2) TERM 436 1178145 - 1178159 + G 84 -11.4 -3.20382 | ATCTTACGTGGATCG GGGTCG GAG CGACCC TTAGTGCCTGTGGAG SSO1341 1177035 - 1178246 + | transposase ISC1316 acsA-2 1179092 - 1178229 - | Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2) TERM 437 1178382 - 1178400 + g 70 -8.2 -3.43722 | overlap 1178380 CCAGCCCCAGTCCGC GGGTGTAT AAA ATACATCC TCTTCTCTTGGTGCC caiB 1179193 - 1180293 + | L-carnitine dehydratase, putative (caiB) SSO1344 1180704 - 1181360 + | hypothetical protein SSO1345 1182555 - 1181782 - | hypothetical protein TERM 438 1184316 - 1184327 + G 76 -4.4 -5.10208 | CAATTCCTTTTGCCA TTCC TATT GGAA TTTTTATTGGGATTA SSO1346 1183991 - 1184653 + | hypothetical protein SSO1347 1185339 - 1184788 - | third ORF in transposon ISC1778 SSO1348 1186006 - 1185287 - | second ORF in transposon ISC1778 TERM 439 1185480 - 1185494 + gr 74 -8.6 -3.2963 | AGAAAGTTCACTGGT GTTACC CAT GGTAAC TTGTAACGAAATGGT SSO1349 1186691 - 1186104 - | transposon ISC1778 Orf1 TERM 440 1186269 - 1186283 + g 77 -10 -3.28708 | overlap 1186262 TACTATTTCACAGTT GTGTGC TTT GCACAC TTCCTCTAGGATTTC TERM 441 1186515 - 1186531 + g 72 -3.7 -4.94902 | opp_overlap 1186506 1186503, overlap 1186506 1186503 1186515 AGATGATACTCTAGC GTAAAGT ATT ACTTTTC TTTTTCTAATAATTC TERM 442 1186515 - 1186526 + g 74 -3 -5.3658 | opp_overlap 1186506 1186503, overlap 1186506 1186503 1186515 AGATGATACTCTAGC GTAA AGTA TTAC TTTTCTTTTTCTAAT TERM 443 1186877 - 1186895 + H 71 -6.7 -4.13343 | gap 1, overlap 1186877 CAAAACTGACTTTCT CC-CGCCA CTCA TGGCGAGG TTTTCAGCAGTTTGT SSO1350 1187005 - 1187811 + | hypothetical protein SSO1351 1187882 - 1189561 + | permease, multidrug efflux SSO1352 1189545 - 1189979 + | MarR family transcriptional regulator SSO1353 1191945 - 1189954 - | hypothetical protein SSO1354 1192998 - 1192000 - | endoglucanase precursor cpsA-1 1193091 - 1194272 + | thermostable carboxypeptidase (cpsA-1) TERM 444 1194327 - 1194344 + G 77 -8.5 -3.87583 | opp_overlap 1194317 1194326, overlap 1194317 AAAGGTTCTCAATAT TTTGAGG AATT CCTCAAA TTTACCTTTAAGTTT SSO1356 1194295 - 1194774 + | hypothetical protein SSO1357 1194841 - 1195527 + | dolichyl-phosphate mannose synthase-like protein SSO1359 1196498 - 1195968 - | hypothetical protein SSO1360 1196905 - 1196495 - | hypothetical protein SSO1361 1198053 - 1196929 - | transport membrane protein (permease) SSO1362 1198232 - 1198675 + | transposon ISC1048 Orf1 SSO1363 1198519 - 1199217 + | second ORF in transposon ISC1048 SSO1365 1200696 - 1199398 - | hypothetical protein SSO1366 1200831 - 1201349 + | transposon ISC1316 Orf1 SSO1367 1202503 - 1201538 - | transposase ISC1439 TERM 445 1201673 - 1201649 - G 76 -10.1 -3.04799 | opp_overlap 1201655, overlap 1201651 1201655 CAGAACCGTGTAATA GAGGAACAAGA AGA TCTTGTTACTC AACTTCCTAACATAC TERM 446 1203397 - 1203411 + G 84 -11.4 -3.26471 | ATCTTACGTGGATCG GGGTCG GAG CGACCC TTAGTGTGGAGCTCC SSO1368 1202740 - 1203462 + | second ORF in transposon ISC1316 pdhA-1 1203909 - 1204946 + | pyruvate dehydrogenase alpha subunit (lipoamide) pdhB-1 1204943 - 1205941 + | pyruvate dehydrogenase beta subunit (lipoamide) SSO1371 1206729 - 1206340 - | hypothetical protein SSO1372 1207842 - 1207453 - | partial transposase ISC1173 SSO1373 1208872 - 1208054 - | hypothetical protein SSO1374 1209080 - 1209931 + | hypothetical protein SSO1375 1210170 - 1212011 + | hypothetical protein SSO1376 1212563 - 1213678 + | hypothetical protein SSO1377 1214791 - 1213832 - | transposase ISC1234 SSO1378 1214889 - 1216907 + | hypothetical protein SSO1379 1216914 - 1219409 + | hypothetical protein SSO1380 1219406 - 1220197 + | hypothetical protein TERM 447 1220444 - 1220458 + F 88 -11.4 -3.26471 | opp_overlap 1220434 AATGAGTTTCGTTCG GGGTCG GAA CGACCC TTAGTGTGGAGCTCC SSO1381 1221294 - 1221995 + | hypothetical protein SSO1382 1223386 - 1222322 - | transposase ISC1217 TERM 448 1222500 - 1222482 - G 71 -9.6 -2.50994 | overlap 1222481 1222499 TTCAAGGCCACGAAG CCTGAGTT CCT AACCCAGG TCAAGAAGGACCCAC SSO1383 1223837 - 1224370 + | hypothetical protein TERM 449 1225015 - 1224996 - gf 77 -9.3 -3.30969 | ACCCACGAAACTGAA GGACGAG GAAAAG CTCGTCC GAATCTTAGAAAAGA SSO1384 1224793 - 1225251 + | transposon ISC1078 Orf1 SSO1385 1225212 - 1225805 + | second ORF in transposon ISC1078 SSO1386 1226862 - 1226116 - | second ORF in transposon ISC1190 TERM 450 1226775 - 1226785 + g 70 -3.2 -5.03945 | CCATACTTATAACTA GTTC AGC GAGC TTTTTATCATTCTTA SSO7893 1227144 - 1226887 - | transposon ISC1190 Orf1 TERM 451 1227253 - 1227279 + r 88 -11.7 -2.88375 | overlap 1227250 ACGGCCTCAACCCCA GTCAGATCTGT AATAC GCAGATCTGAC TAATATGTTTTATAT SSO7896 1227509 - 1227357 - | second part of one of two inversely orientated orfs in a partial ISC1043 SSO7898 1227869 - 1227573 - | ISC1043 hypothetical protein SSO1387 1227624 - 1227929 + | hypothetical protein TERM 452 1229210 - 1229232 + G 76 -2.1 -5.5074 | gap 1 TGAAAATAAAAAATA TATTG-CAGT TCTC ACTGACGATA TTTTTTATTCGATTC SSO1388 1228221 - 1231316 + | hypothetical protein SSO1389 1232895 - 1231762 - | hypothetical protein TERM 453 1235940 - 1235924 - H 70 -7.3 -3.65314 | CCCAACTTCTAACAA CGTCGTT CTT AACAACG GATTAATCCCAAAAG TERM 454 1238738 - 1238726 - H 82 -4.9 -5.48213 | TATTTAAAACAAAAA TAATC CAA GATTA ATCCCAAAAGGAATT TERM 455 1240307 - 1240295 - H 82 -7.7 -4.39375 | overlap 1240292 AGCAAATTAAAAGAA GGCAT TAC ATGCC TCGCCTCTAACAGAC TERM 456 1240369 - 1240385 + H 93 -9.5 -4.68424 | opp_overlap 1240368 GGGAAGTGAGGATAT GGAAACA ATA TGTTTCC TTTTTGGCTACGTTA SSO1391 1240458 - 1241333 + | hypothetical protein SSO1392 1241293 - 1241898 + | hypothetical protein SSO1393 1242456 - 1243421 + | hypothetical protein SSO1395 1243384 - 1243728 + | hypothetical protein TERM 457 1244071 - 1244100 + F 70 -8.1 -3.11634 | opp_overlap 1244077 1244080 CGTATCTCGGTAGAC CCAAAATCATTTT ACAA AAAATAATTTTGG TTGGGTAATATCAGA SSO1396 1244179 - 1245273 + | transposase ISC1225 SSO1397 1245343 - 1245876 + | hypothetical protein SSO1398 1246615 - 1247103 + | hypothetical protein SSO1399 1247084 - 1248040 + | hypothetical protein TERM 458 1248099 - 1248120 + G 83 -9.5 -3.85505 | opp_overlap 1248102, overlap 1248102 CAGTTAGAGTTCCCA GAACTTCCG CAGG TGGAAGTTC TTATATTGTTCCTCC SSO1400 1248041 - 1248832 + | hypothetical protein SSO1401 1248817 - 1249788 + | hypothetical protein TERM 459 1251020 - 1251005 - gf 71 -6.8 -3.96932 | AGATAGAGTTATAAA GCCTCC AAGA GGAGAC CCTGATTTATTAAGA SSO1402 1249713 - 1251431 + | ATP-dependent RNA helicase related protein SSO1403 1251428 - 1252072 + | hypothetical protein SSO1404 1252534 - 1252229 - | hypothetical protein SSO1405 1253594 - 1252536 - | hypothetical protein SSO1406 1253640 - 1254425 + | hypothetical protein TERM 460 1254715 - 1254701 - T 71 -8.6 -2.80016 | overlap 1254698 TTTTAGGATTAATCA CCAAGT GAA ACTTGG AATATATAACCAAAA TERM 461 1255332 - 1255369 + T 78 -9.3 -3.492 | gap 1, opp_overlap 1255332, overlap 1255330 TCCTTTTAGGATTAA TCCATGCATCAGTTCATC GTA GTTGAACTCA-GCATGGA TCTTTCAATTCCTTT TERM 462 1255369 - 1255332 - T 77 -9.3 -3.21099 | gap 1, opp_overlap 1255332 1255330 TCCTTTTAGGATTAA TCCATGCATCAGTTCATC GTA GTTGAACTCA-GCATGGA TCTTTCAATTCCTTT TERM 463 1259013 - 1259025 + T 74 -9.1 -3.0297 | overlap 1259010 TTATCTGTTTCATCC GTGGC TTT GCCAC TCATTTCGTCTTCCT SSO1408 1262737 - 1262048 - | second ORF in transposon ISC1439 SSO7986 1263009 - 1262755 - | transposon ISC1439 Orf1 SSO1409 1263897 - 1264631 + | hypothetical protein TERM 464 1264749 - 1264761 + F 79 -4.9 -5.28481 | TATTGCGTTAGTTAC TCTTT TAT AAAGA TTTTTTGCTTAAATG SSO1410 1264838 - 1265626 + | transposase ISC1058 SSO1412 1266099 - 1266701 + | hypothetical protein SSO1413 1266753 - 1267172 + | hypothetical protein SSO1414 1267334 - 1267870 + | partial transposase ISC1250 SSO7998 1268147 - 1267917 - | partial ORF in transposon ISC1491 SSO1417 1269445 - 1268756 - | second ORF in transposon ISC1439 SSO8002 1269717 - 1269463 - | transposon ISC1439 Orf1 TERM 465 1270095 - 1270037 - H 100 -15.1 -2.7464 | gap 1, opp_overlap 1270040, overlap 1270059 1270070 AACGCATTTTTAAAT CCATTGATACTTAGACTATCAA-GATTT TTTA AACCCTTTGATATTCTAAGTATCAATGG AAGAAAACATTTGGT SSO1418 1270092 - 1271321 + | hypothetical protein apeH-1 1273034 - 1271424 - | acylaminoacyl-peptidase SSO1420 1273483 - 1274442 + | transposase ISC1234 SSO1421 1275779 - 1276312 + | hypothetical protein SSO1422 1276502 - 1277293 + | hypothetical protein SSO1423 1277305 - 1277907 + | hypothetical protein SSO1424 1277873 - 1278292 + | hypothetical protein SSO1425 1278289 - 1279041 + | hypothetical protein SSO1426 1279025 - 1279870 + | hypothetical protein SSO1427 1279842 - 1280669 + | hypothetical protein SSO1428 1280804 - 1282480 + | hypothetical protein SSO1429 1282426 - 1283310 + | hypothetical protein TERM 466 1283679 - 1283653 - g 77 -8.1 -3.97308 | gap 1, opp_overlap 1283661, overlap 1283654 ACGATAAAACGCAAA GGGCCAAAGAGG GTTC CCTCTTT-ACCC AACAAATCATATTGC SSO1430 1283307 - 1283927 + | hypothetical protein TERM 467 1284772 - 1284782 + G 72 -8.2 -3.58162 | opp_overlap 1284767 1284766, overlap 1284767 CGAGAAAAGTTTAAT GCCC GCA GGGC TTAATTTCATGCTAA SSO1431 1283924 - 1284838 + | hypothetical protein SSO1432 1284840 - 1285598 + | hypothetical protein SSO1433 1286107 - 1286691 + | hypothetical protein SSO1435 1288251 - 1287313 - | transposase ISC1173 SSO1436 1289445 - 1288534 - | hypothetical protein SSO1437 1290519 - 1289656 - | hypothetical protein SSO1438 1291598 - 1290519 - | hypothetical protein SSO1439 1292313 - 1291579 - | hypothetical protein TERM 468 1291695 - 1291670 - G 72 -7.6 -3.6959 | AGACTACTATCTAAA TTATCCCCCA ACATTA TGGGGGCTAA AAAAAGATTATATAA SSO1440 1293857 - 1292310 - | ATP-dependent RNA helicase-like protein SSO1441 1294521 - 1293799 - | hypothetical protein SSO1442 1295502 - 1294537 - | hypothetical protein SSO1443 1295951 - 1295499 - | hypothetical protein SSO1444 1296641 - 1296030 - | hypothetical protein TERM 469 1296075 - 1296095 + g 86 -5.6 -5.33405 | opp_overlap 1296079 ACCCTTTATGGTTAA TTTATTGA ACTCA TCAATAAA TTTTTCTTTCCTCAA TERM 470 1298196 - 1298214 + H 78 -6.8 -4.40358 | opp_overlap 1298196 1298198 AATTCTATAAGAGAT TATCTGGA GTT TTCAGATA TTTTGTAAAGTACGT SSO1445 1299449 - 1300162 + | hypothetical protein SSO1448 1301847 - 1300681 - | transposase ISC1359 TERM 471 1301720 - 1301748 + g 89 -11 -4.09827 | ATCTTGAGGGCGGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC SSO1449 1303219 - 1302692 - | hypothetical protein TERM 472 1303158 - 1303190 + g 74 -9.3 -2.95081 | overlap 1303155 TTCCATCCCATTTTC TTCCTTATCCAAGGT ATG ACCTTACATAAGGAA TAGTCTTTTAAATCC SSO1450 1304397 - 1303474 - | hypothetical protein SSO1451 1305242 - 1304394 - | hypothetical protein TERM 473 1304461 - 1304450 - G 75 -7.2 -4.2461 | opp_overlap 1304446 1304440 AGGGGGAGCAAGAAA CCGG CATT CCGG GATCCTTCTCTTGAC TERM 474 1306579 - 1306565 - R 81 -10 -3.01915 | overlap 1306564 TTGGCAGAAAAAGAG TCTGGC TTT GCCAGA AAGGGATAATCTCTT SSO1456 1312546 - 1312127 - | hypothetical protein gdhA-1 1313283 - 1314542 + | NAD specific glutamate dehydrogenase (gdhA-1) SSO1458 1315756 - 1315181 - | hypothetical protein dpo2 1317435 - 1315750 - | DNA polymerase II (DNA polymerase B2) carboxy-end (dpo2) TERM 475 1316505 - 1316519 + gr 76 -5 -5.00895 | opp_overlap 1316505 1316506, overlap 1316506 TTTCCTTTAAGCAAA TTGAGT GCA ACTCAG TTTTTATATCATCAC dpo2 1317629 - 1317363 - | DNA polymerase II (DNA polymerase B2) amino-end (dpo2) SSO1460 1318063 - 1320558 + | penicillin acylase precursor SSO1461 1320555 - 1320905 + | hypothetical protein SSO1462 1321236 - 1321559 + | hypothetical protein SSO1463 1322885 - 1321632 - | amino acid transporter SSO1464 1322991 - 1324553 + | hypothetical protein pcp 1325180 - 1324545 - | pyrrolidone-carboxylate peptidase SSO1466 1326590 - 1325625 - | transposase ISC1439 TERM 476 1325760 - 1325736 - G 76 -10.1 -3.04799 | opp_overlap 1325742, overlap 1325738 1325742 CAGAACCGTGTAATA GAGGAACAAGA AGA TCTTGTTACTC AACTTCCTAACATAC TERM 477 1327578 - 1327602 + r 76 -9.5 -3.1372 | overlap 1327576 CCCATTTCTTTCGTC TCTTTATTAAG TAG CTTAATGAAGA TATTAGTCCACAATC SSO1468 1328948 - 1327716 - | hypothetical protein TERM 478 1329009 - 1329028 + r 80 -9.4 -3.45737 | opp_overlap 1329007 CTGCACCAAATTACC TCTTCCTA CCAG TAGGAAGA TTATGATAATAATTC SSO1469 1331039 - 1330173 - | hypothetical protein SSO1470 1332129 - 1331704 - | hypothetical protein SSO1471 1332589 - 1332122 - | hypothetical protein TERM 479 1332397 - 1332407 + g 73 -5.4 -4.5442 | CCTTATATACAGTGA GATC TAG GATC TTTTCTACTTCAAAG SSO1472 1333044 - 1333433 + | transposon ISC1439 Orf1 SSO1473 1333433 - 1334008 + | second ORF in transposon ISC1439 SSO1474 1334725 - 1335126 + | transposase SSO1475 1335113 - 1336363 + | transposase ISC1476 SSO1478 1336907 - 1336464 - | second ORF in transposon ISC1212 SSO1479 1337419 - 1336991 - | transposon ISC1212 Orf1 TERM 480 1337510 - 1337487 - R 71 -8 -3.34005 | AATCAACTTGGATAA CGTCCCGTGG TCTA CCGCTGGACG AACAGAGTGGGGTGG SSO1480 1338525 - 1337632 - | second ORF in transposon ISC1225 SSO1481 1339660 - 1338701 - | transposase ISC1234 SSO8189 1339958 - 1339737 - | transposon ISC1225 Orf1 TERM 481 1340066 - 1340037 - H 70 -8.1 -3.11634 | opp_overlap 1340043 1340047 TCTGATATTACCCAA CCAAAATTATTTT TTGT AAAATGATTTTGG GTCTACCGTTTAGGG SSO1483 1340550 - 1340996 + | hypothetical protein SSO8193 1341275 - 1341523 + | ISC1043 hypothetical protein SSO8194 1341520 - 1341696 + | second part of one of two inversely orientated orfs in ISC1043 SSO8195 1341626 - 1341778 + | third part of one of two inversely orientated orfs in ISC1043 TERM 482 1341881 - 1341855 - f 88 -11.7 -2.88375 | overlap 1341852 ATATAAAACATATTA GTCAGATCTGC GTATT ACAGATCTGAC TGGGGTTGAGGCCGT SSO1484 1341997 - 1342947 + | transposon ISC1190 SSO1486 1343346 - 1343008 - | hypothetical protein SSO1487 1343471 - 1344274 + | transposase ISC1058 SSO1489 1344571 - 1345083 + | hypothetical protein TERM 483 1345305 - 1345282 - f 72 -7.4 -3.8679 | gap 1, overlap 1345283 TACAAAAGACCGAAA GCCCTACCCCT TCT AGGGGT-GGGA TAAGCGAAAGTCAAC TERM 484 1345304 - 1345283 - f 83 -10.9 -2.9099 | gap 1, overlap 1345282 ACAAAAGACCGAAAG CCCTACCCCT TCT AGGGGT-GGG ATAAGCGAAAGTCAA SSO1490 1345827 - 1346141 + | partial transposase from ISC1048 SSO1491 1347400 - 1346285 - | hypothetical protein SSO1493 1347931 - 1347608 - | hypothetical protein SSO1494 1348295 - 1347993 - | hypothetical protein SSO1495 1348773 - 1349345 + | hypothetical protein SSO1496 1350091 - 1350417 + | hypothetical protein TERM 485 1351130 - 1351116 - g 77 -10 -3.28708 | overlap 1351126 GAAATCTTAGAGGAA GTGTGC AAA GCACAC AACTGCGAAATAGTA SSO1497 1350854 - 1351189 + | transposon ISC1778 Orf1 TERM 486 1352419 - 1352385 - g 77 -10.1 -3.18571 | gap 1, overlap 1352383 TTCTCTAAACATATA CCTCA-AGATGTGCGG ATTC CCTCACATCCGTGAGG GTGGGGTTAGGGGTT SSO1498 1351270 - 1352472 + | second ORF in transposon ISC1778 SSO1500 1355674 - 1352555 - | hypothetical protein TERM 487 1353253 - 1353263 + g 73 -6.8 -4.34859 | opp_overlap 1353252 TTATCCCGCAAAATC CGAC AAG GTCG TTTATATATTTTAAT SSO1501 1355907 - 1356590 + | hypothetical protein msr 1357488 - 1358021 + | methionine sulfoxide reductase A SSO1504 1359234 - 1358059 - | transposase ISC1316 TERM 488 1358124 - 1358110 - G 84 -11.4 -3.26471 | GGAGCTCCACACTAA GGGTCG CTC CGACCC CGATCCACGTAAGAT TERM 489 1359495 - 1359483 - H 75 -4.9 -5.06451 | TAGCATCTTAAAAAA TTGAA GTA TTCAA CAAAGCACCTACATT SSO1505 1360281 - 1361546 + | membrane transporter SSO1507 1361671 - 1362150 + | hypothetical protein SSO1508 1362562 - 1362107 - | hypothetical protein TERM 490 1362187 - 1362208 + g 75 -8.8 -3.481 | opp_overlap 1362190, overlap 1362190 GGGGAAGATGTGAAG GAAGGAGT TCGCGT ACTCCTTC TTCATCTTTGACTTG TERM 491 1362893 - 1362858 - R 83 -10.4 -3.28791 | overlap 1362866 1362888 AGGTTTCTCTGAGAA GCAGGAAATCTTCACC GCGA GGTGGAGATACCCCGC CCTTAGCGGTAGACC SSO1509 1364008 - 1362914 - | transposase ISC1225 TERM 492 1364116 - 1364087 - R 70 -8.1 -3.11634 | opp_overlap 1364093 1364097 TCTGATATTACCCAA CCAAAATTATTTT TTGT AAAATGATTTTGG GTCTACCGTTAGGAC SSO1510 1364927 - 1364187 - | hypothetical protein SSO1512 1366330 - 1364918 - | hypothetical protein TERM 493 1365580 - 1365590 + g 78 -5.4 -5.06414 | TGACGTTAAGTACAT CGAT GAT ATCG TTTTTATTACAAGCC SSO1513 1366796 - 1366323 - | hypothetical protein TERM 494 1366699 - 1366729 + g 83 -9 -4.2803 | opp_overlap 1366704, overlap 1366701 1366704 TCTGCGGATCTCCTA AGCAATCCGGGTTT AGA AGGCCCGGATTGTA TTTTACATTGGGCTG TERM 495 1366701 - 1366727 + g 100 -13.8 -3.7398 | opp_overlap 1366704, overlap 1366699 1366704 TGCGGATCTCCTAAG CAATCCGGGTTT AGA AGGCCCGGATTG TATTTTACATTGGGC TERM 496 1366704 - 1366724 + g 85 -9.7 -3.99228 | opp_overlap 1366704, overlap 1366701 1366699 GGATCTCCTAAGCAA TCCGGGTTT AGA AGGCCCGGA TTGTATTTTACATTG SSO1514 1367608 - 1366799 - | hypothetical protein SSO1515 1368937 - 1368467 - | hypothetical protein TERM 497 1370259 - 1370277 + G 81 -9.6 -3.76492 | GTGGGTCCTTCCTTA CCTGGGTT AGG AACTCAGG TTTCGTGGCCTTGAA SSO1516 1369373 - 1370437 + | transposase ISC1217 SSO8276 1370931 - 1370641 - | hypothetical protein SSO8278 1371163 - 1370921 - | hypothetical protein SSO1518 1371623 - 1371297 - | partial transposase from ISC1048 deoD 1372685 - 1371861 - | purine nucleoside phosporylase (deoD) SSO1520 1373305 - 1373658 + | hypothetical protein SSO1521 1373676 - 1374218 + | hypothetical protein SSO8288 1374297 - 1374578 + | hypothetical protein TERM 498 1374678 - 1374650 - f 80 -9.1 -3.60805 | opp_overlap 1374640 1374652, overlap 1374653 AGATTGGACTTTAAA TATTTTAACTAGT TTA ACTAGTTAAACTA TATGAAAGTACTTAT TERM 499 1374675 - 1374653 - f 82 -10.8 -2.62613 | opp_overlap 1374652 1374640, overlap 1374650 TTGGACTTTAAATAT TTTAACTAGT TTA ACTAGTTAAA CTATATGAAAGTACT SSO1522 1374680 - 1375012 + | hypothetical protein SSO1523 1374981 - 1375361 + | hypothetical protein pdhD-2 1375603 - 1376841 + | dihydrolipoamide dehydrogenase (pdhD-2) pdhA-2 1377377 - 1378375 + | pyruvate dehydrogenase alpha subunit (lipoamide) TERM 500 1378581 - 1378599 + G 70 -8.9 -3.09933 | overlap 1378594 GGCTGGGTTCATAGG TGCAGCA GTAGG TGCTGCA TTAGCTGGCTTAAGA pdhB-2 1378387 - 1379361 + | pyruvate dehydrogenase beta subunit (lipoamide) acoX 1379369 - 1380388 + | acetoin catabolism protein AcoX pdhC 1380370 - 1381005 + | dihydrolipoamide S-acetyltransferase, amino-end (pdhC) pdhC 1381020 - 1381553 + | dihydrolipoamide S-acetyltransferase, carboxy-end (pdhC) SSO1531 1381827 - 1383182 + | alkyldihydroxyacetonephosphate synthase SSO1532 1384883 - 1383858 - | hypothetical protein TERM 501 1384848 - 1384862 + g 71 -4.2 -4.88288 | opp_overlap 1384848 GTAATAATCCATAAC CCAGAA CAG TTCAGG TTTTATCTTATTTTC SSO1533 1384983 - 1386137 + | homogentisate oxygenase related protein SSO1535 1387892 - 1386468 - | multidrug ABC transporter SSO1536 1388376 - 1389023 + | hypothetical protein SSO1537 1389059 - 1389868 + | hypothetical protein TERM 502 1389871 - 1389857 - T 76 -7.2 -4.19276 | opp_overlap 1389856 CCAAAAGCTCCAAAA GAACTA AAA TAGTTC ATAAATTAGACTAGA dapE 1391334 - 1390102 - | succinyl-diaminopimelate desuccinylase TERM 503 1390549 - 1390567 + g 71 -5.2 -4.57837 | TCCGCATTTAACCAC GCCAACTA ATA TGGTAGGC TTTTTACCCGACTCT SSO1539 1391826 - 1393118 + | transport protein SSO1540 1393123 - 1393971 + | hypothetical protein fabG-3 1393968 - 1394735 + | 3-oxoacyl-(acyl carrier protein) reductase (fabG-3) TERM 504 1395800 - 1395851 + T 95 -11.8 -3.7046 | opp_overlap 1395801 1395804 1395809, overlap 1395801 1395809 CTTGTTGACTATTTA ATGAGGGAATTGGTATTCTCATGA ACCC TCATGGTAATACCGATTTCCTCGC TTTAAACCTTTTTTC TERM 505 1395801 - 1395850 + T 100 -15.3 -2.81191 | opp_overlap 1395801 1395804 1395809, overlap 1395800 1395809 TTGTTGACTATTTAA TGAGGGAATTGGTATTCTCATGA ACCC TCATGGTAATACCGATTTCCTCG CTTTAAACCTTTTTT TERM 506 1395809 - 1395842 + T 77 -8.3 -3.82097 | opp_overlap 1395809 1395804 1395801, overlap 1395801 1395800 TATTTAATGAGGGAA TTGGTATTCTCATGA ACCC TCATGGTAATACCGA TTTCCTCGCTTTAAA SSO1545 1397068 - 1395998 - | hypothetical protein SSO1546 1397547 - 1398416 + | partial transposase ISC1439 SSO1548 1398676 - 1399431 + | partial transposase ISC1229 SSO1550 1400979 - 1399795 - | hypothetical protein SSO1552 1401979 - 1400951 - | hypothetical protein TERM 507 1401799 - 1401825 + gr 73 -5.4 -4.59919 | opp_overlap 1401804, overlap 1401804 TGAAAAAGCCAGTTT TAATATTATTTT CTA AAAATAATTTTA TTCTTTTTGTCATTT TERM 508 1401804 - 1401820 + gr 81 -5.3 -5.18715 | opp_overlap 1401804, overlap 1401799 AAGCCAGTTTTAATA TTATTTT CTA AAAATAA TTTTATTCTTTTTGT SSO1553 1403125 - 1402589 - | hypothetical protein SSO8351 1403475 - 1403714 + | transposon ISC1395 Orf1 SSO1554 1403746 - 1404135 + | second ORF in transposon ISC1395 SSO1555 1404132 - 1404605 + | hypothetical protein SSO1556 1404715 - 1405452 + | transposon ISC1491 Orf1 SSO8359 1405449 - 1405745 + | ORF in transposon ISC1491 SSO1560 1406046 - 1406915 + | oxidoreductase TERM 509 1407200 - 1407250 + F 74 -5.8 -4.57837 | gap 3, overlap 1407249 AAAACTCATGTGAGA GGTTT-T-TGTGAGGGTTAGCAAGA CGGA TCTAG-TAACCCTCGCACATAAACC TTTTTCAGAGGCTGT TERM 510 1408608 - 1408635 + G 70 -8.6 -2.99558 | overlap 1408607 GCTATGGTAGTAGGA TTTCTGAAAACA CTAG TGCTTTCAGAAA GTTTATGGCTTATAG SSO1562 1407806 - 1408669 + | hypothetical protein SSO1563 1408758 - 1409189 + | hypothetical protein SSO1564 1410179 - 1409604 - | ORF in partial transposon ISC1778 pdhD-3 1411699 - 1410329 - | dihydrolipoamide dehydrogenase SSO1566 1412210 - 1413394 + | Heme biosynthesis related protein SSO1567 1413379 - 1414080 + | hypothetical protein SSO1568 1415376 - 1415939 + | hypothetical protein SSO1569 1415881 - 1416306 + | hypothetical protein SSO1570 1416337 - 1416720 + | hypothetical protein norB-1 1418666 - 1417062 - | nitric oxide reductase, subunit I (cytochrome B) (norB-1) SSO1572 1418932 - 1419897 + | transposase ISC1439 norB-2 1420630 - 1420046 - | nitric oxide reductase, subunit I (cytochrome B) (norB-2) SSO1574 1421211 - 1420804 - | hypothetical protein SSO1577 1422710 - 1421343 - | oxidoreductase TERM 511 1421409 - 1421426 + g 75 -9.9 -2.87881 | CTGAAACGCGTACTC TGCCCTA TGCT TAGGGCA TCTCTCCAACCATTC SSO1578 1424012 - 1422717 - | DsrP protein, putative TERM 512 1422825 - 1422843 + g 70 -9 -3.05816 | opp_overlap 1422825 1422824 1422822 1422827, overlap 1422827 1422829 GCCAATGAAGAACAC TATATCGT AGA ACGATATA TTAAATGGCAGGTGC SSO1579 1424695 - 1424009 - | molybdopterin oxidoreductase, iron-sulfur binding subunit TERM 513 1424547 - 1424559 + g 81 -9.1 -4.07968 | opp_overlap 1424545 GTTCTAAATAGACCT CGCCA GAA TGGCG TTTGATTCTCTATTG SSO1580 1427854 - 1424702 - | molybdopterin oxidoreductase, molybdopterin binding subunit SSO1581 1428130 - 1430016 + | hypothetical protein SSO1583 1430039 - 1430932 + | hypothetical protein TERM 514 1432001 - 1432015 + G 71 -8.6 -3.13403 | AGTACGCTAAAGCCT CAGTAG CTA CTACTG TCTTAGTCAACGGAA SSO1584 1431061 - 1432560 + | hypothetical protein TERM 515 1432779 - 1432727 - T 89 -12.2 -2.75975 | gap 1, opp_overlap 1432729, overlap 1432724 1432731 CCTTAAGAGATACTA GATACTCCTCCCACAGTCCCATTAA GCCC TCAATCGAGCTG-GGGAGGAGCATC ATTAACATCACTAAA TERM 516 1432775 - 1432731 - T 76 -9.4 -3.00661 | gap 1, opp_overlap 1432729, overlap 1432727 1432724 AAGAGATACTAGATA CTCCTCCCACAGTCCCATTAA GCCC TCAATCGAGCTG-GGGAGGAG CATCATTAACATCAC SSO1586 1433741 - 1432890 - | hypothetical protein SSO1587 1434831 - 1433920 - | hypothetical protein SSO1588 1435294 - 1434983 - | transcription regulator SSO8426 1435333 - 1435554 + | hypothetical protein SSO1589 1435680 - 1436033 + | hypothetical protein SSO1590 1436030 - 1437073 + | hypothetical protein TERM 517 1437207 - 1437229 + G 70 -2.8 -5.16572 | overlap 1437209 CTTATTTCATAGCTA TCGTATTAAA GGT TTTAGTACAA TTTTTTACCTTAGGT SSO1591 1437080 - 1437778 + | proton symporter SSO1593 1439055 - 1437748 - | hypothetical protein TERM 518 1438960 - 1438936 - G 78 -9.3 -3.6363 | overlap 1438953 ATTAGGATAAATTAA GGGAGCAATAG AAG CAATTACTCCC CACATGAAGTAACCT SSO1594 1439734 - 1439192 - | coenzyme F390 synthetase alkK-1 1439908 - 1441335 + | medium-chain-fatty-acid--CoA ligase (alkK-1) acd-2 1443069 - 1441519 - | Acyl-CoA dehydrogenase (acd-2) SSO1598 1444715 - 1443075 - | partial transposase ISC1225 TERM 519 1446037 - 1446009 - g 93 -12.5 -3.41795 | opp_overlap 1446017 AAAGTTGTACGACAA GGTAAGGAGTCCC ATA GAGACTTCTTACC GGAACATCAAGGCCC glpK-1 1445389 - 1446273 + | glycerol kinase (glpK-1) SSO1600 1446518 - 1448023 + | transporter/facilitator SSO1601 1448024 - 1448893 + | transposon ISC1229 Orf1 SSO8456 1449178 - 1448951 - | ORF in partial transposon ISC1217 SSO8458 1449357 - 1449175 - | ORF in partial transposon ISC1217 TERM 520 1449301 - 1449332 + g 72 -9.6 -2.72511 | opp_overlap 1449308 1449324 1449328, overlap 1449301 1449306 TACAAGCAATTTTAT GGGAATACCTTG GTATTCCA CAAGGTATTTCC CTTTGGGGAACTCAC SSO8459 1449636 - 1449400 - | hypothetical protein SSO1602 1449666 - 1450007 + | second ORF in transposon ISC1229 SSO1603 1450055 - 1450573 + | third ORF in transposon ISC1229 TERM 521 1450589 - 1450625 + F 88 -11.6 -3.35371 | overlap 1450591 1450617 GTAAGCCCTCCCCCG AATCGCCACGTGGGTT GAAAG GACCCACGTGGCAATC TTAGTTGACACTATG TERM 522 1450591 - 1450623 + F 100 -14.2 -3.24329 | overlap 1450589 1450617 AAGCCCTCCCCCGAA TCGCCACGTGGGTT GAAAG GACCCACGTGGCAA TCTTAGTTGACACTA SSO8462 1450617 - 1450820 + | hypothetical protein TERM 523 1451444 - 1451463 + T 72 -3.6 -5.2696 | TGAACATTTTATAGT TGATATTG AACC CTATATCA TTTTTTAAATTTTAC SSO1605 1452040 - 1451468 - | hypothetical protein SSO1606 1452325 - 1453128 + | hypothetical protein TERM 524 1453223 - 1453239 + T 78 -2.3 -5.80003 | GACAACGACAACTAG GAGAA GGTAAGA TTCTC TTTTTTATTTGTTAA pcp-like 1453848 - 1453219 - | pyrrolidone-carboxylate peptidase SSO8469 1453925 - 1454182 + | hypothetical protein TERM 525 1454230 - 1454214 - T 72 -5.1 -4.81814 | overlap 1454216 ACGAGGATAAGAAAA TGGTGAG GGA CTCACGA GAGGTCAATTGGTGA SSO8472 1454690 - 1454484 - | hypothetical protein SSO1608 1455124 - 1454687 - | hypothetical protein SSO8475 1455422 - 1455709 + | hypothetical protein SSO8478 1455740 - 1456027 + | hypothetical protein SSO8481 1456112 - 1456303 + | hypothetical protein TERM 526 1457349 - 1457338 - T 73 -4.4 -5.10077 | opp_overlap 1457338 AAAGAGGCTAAAAAA TTGC TAAG GCAA TTTCTGGAGCGTATT SSO1610 1458435 - 1457989 - | hypothetical protein SSO1611 1459364 - 1458558 - | hypothetical protein TERM 527 1459105 - 1459067 - G 73 -5.3 -4.65153 | overlap 1459086 CTATATAAATTAAAA TCGGTAAAATAGCACCG AATAG CAATGCTACTATGCCGA TAATAAATATGTTAA SSO1612 1461099 - 1460176 - | transposase ISC1290 TERM 528 1461066 - 1461124 + g 70 -8.3 -3.30439 | opp_overlap 1461066, overlap 1461100 AATGTTCATAGGGAA CCGGGCCGTTGTAGTATTCTATCCA-ATG CTT CATGTGAATCGG-TACTACATCGTCCCGG TTCCCTTTAAGTATT SSO1613 1461287 - 1461955 + | hypothetical protein SSO1614 1463005 - 1461980 - | glycosyltransferase SSO1615 1463138 - 1464673 + | hypothetical protein SSO1616 1464742 - 1465701 + | transposase ISC1234 SSO1617 1465989 - 1466684 + | hypothetical protein TERM 529 1467536 - 1467520 - gT 73 -2.3 -5.29445 | TCTGAAGAAGAAAAA TTCGAAA TAC TCTCAAA GGCAAGGGCTTTAGT SSO1618 1466644 - 1467852 + | glycosyltransferase SSO1619 1469011 - 1467986 - | glycosyltransferase SSO1620 1470577 - 1469360 - | glycosyltransferase TERM 530 1471497 - 1471483 - g 76 -6.4 -4.51812 | CTGCATAAGAATAAA TGAGGA GTT TCCCCA AATAGATTACATTAA SSO1621 1470614 - 1471627 + | hypothetical protein SSO1622 1472103 - 1473362 + | glycosyltransferase TERM 531 1474281 - 1474264 - g 70 -2.7 -5.07567 | opp_overlap 1474264, overlap 1474254 1474276 TGATATTGTAAAAAA TATGGTT AAAG ATCCATA TCTTTTAAAAATGGA SSO1623 1473380 - 1474498 + | hypothetical protein SSO1624 1474711 - 1476120 + | polysaccharide biosynthesis related protein SSO1625 1477508 - 1476858 - | hypothetical protein SSO1626 1479011 - 1477947 - | glycosyltransferase TERM 532 1480134 - 1480116 - g 82 -11 -3.31443 | opp_overlap 1480116, overlap 1480111 TGTATAATAAGGTAA GAGGTCCC ATA GAGACCTC TTATAGGAACATTAA TERM 533 1480116 - 1480134 + G 73 -8.8 -3.30159 | opp_overlap 1480111 1480116 TGTATAATAAGGTAA GAGGTCCC ATA GAGACCTC TTATAGGAACATTAA SSO1627 1479404 - 1480378 + | partial transposase ISC1225 gapN-1 1482070 - 1480658 - | glyceraldehyde-3-phosphate dehydrogenase, NADP dependent (gapN-1) pqqE-2 1483252 - 1482200 - | coenzyme PQQ synthesis protein E (pqqE-2) pqqE-3 1484361 - 1483225 - | coenzyme PQQ synthesis protein E (pqqE-3) SSO1634 1484911 - 1484423 - | hypothetical protein SSO8549 1486446 - 1486649 + | hypothetical protein SSO1635 1486622 - 1487182 + | hypothetical protein SSO1636 1487906 - 1489453 + | hypothetical protein SSO1637 1489981 - 1489637 - | hypothetical protein SSO1638 1492476 - 1489987 - | penicillin acylase precursor TERM 534 1490844 - 1490830 - G 71 -7.2 -3.93864 | ACCAATAAATGGAAA TGGATA ATT TATCCA AACAGTGGGTTGATT TERM 535 1492563 - 1492577 + H 87 -8.6 -4.20074 | opp_overlap 1492562 TGTTTTTGCATTAAC CTTGCA TTT TGCAAG TTTTCAAATCTCTTT SSO8568 1492953 - 1493198 + | transposon ISC1229 Orf1 TERM 536 1493447 - 1493426 - g 88 -8.1 -4.57341 | gap 1 AATCTTGGCTAAAAA CCTC-CTTGA GAT TCAAGAGAGG TTGAAGGAGGTTAGG SSO1639 1493220 - 1493849 + | second ORF in transposon ISC1229 TERM 537 1493867 - 1493899 + T 100 -14.2 -3.11272 | AAGCCCTCCCCCGAA TCGCCACGTGGGTT GAAAG GACCCACGTGGCAA TGTTAGCTAGTACTA SSO1640 1494321 - 1493962 - | hypothetical protein SSO1641 1494686 - 1494297 - | hypothetical protein SSO1642 1495464 - 1496429 + | transposase ISC1439 SSO1643 1496721 - 1497683 + | hypothetical protein SSO1645 1497688 - 1498104 + | hypothetical protein adh-5 1498101 - 1499135 + | zinc-containing alcohol dehydrogenase mdlC 1500632 - 1499121 - | benzoylformate decarboxylase (mdlC) TERM 538 1499595 - 1499609 + g 73 -8.6 -3.39803 | TTCTTTGAAAACTTC GGTGAT AAA ATCACC TTGTAACTCTAGATC TERM 539 1500949 - 1500929 - R 71 -7.7 -3.50278 | overlap 1500927 GAGAAAAATAAGATA CACTGTAAT ATT ATTACAATG ATGAGAAAACAAGTT SSO1648 1501563 - 1501090 - | second ORF in transposon ISC1250 TERM 540 1502519 - 1502537 + G 71 -9.6 -2.50994 | overlap 1502507 1502518 GTGGGTCCTTCTTGA CCTGGGTT AGG AACTCAGG CTTCGTGGCCTTGAA SSO1649 1501633 - 1502697 + | transposase ISC1217 SSO1650 1503115 - 1502702 - | transposon ISC1250 Orf1 TERM 541 1503048 - 1503087 + g 95 -11.6 -4.48741 | overlap 1503049 TTGAGATGTGTAAGC TCTTCTATGACCTCACTT GGCT GAGTGAGGTTGTAGAGGG TTTTCTCGTCAATTG TERM 542 1503049 - 1503086 + g 90 -12.9 -3.28522 | overlap 1503048 TGAGATGTGTAAGCT CTTCTATGACCTCACTT GGCT GAGTGAGGTTGTAGAGG GTTTTCTCGTCAATT SSO1651 1503698 - 1503303 - | hypothetical protein SSO1652 1504337 - 1505563 + | transposase ISC1316 TERM 543 1505549 - 1505563 + F 72 -5.7 -4.3586 | TTAGGAGGGGGTAGC TCACC GTATA GGTGA TTTTCCTATAAATGC SSO1653 1506159 - 1508567 + | hypothetical protein SSO1654 1509538 - 1508573 - | transposase ISC1173 SSO1655 1509686 - 1510060 + | hypothetical protein SSO1656 1510060 - 1510713 + | hypothetical protein SSO8620 1511957 - 1512196 + | hypothetical protein SSO1657 1512162 - 1512542 + | hypothetical protein SSO1658 1512757 - 1513338 + | transposon ISC1778 Orf1 SSO1659 1513316 - 1514584 + | second ORF in transposon ISC1778 huyB-1 1516986 - 1515235 - | N-methylhydantoinase B (huyB-1) huyA-1 1519040 - 1516989 - | N-methylhydantoinase A (huyA-1) TERM 544 1518198 - 1518210 + g 81 -2.7 -5.67967 | TGTACTTCCACCATC CATTG CTA TAATG TTTTTTTCTCCTAAT SSO1664 1519238 - 1519717 + | hypothetical protein codB 1519887 - 1521248 + | cytosine permease (codB) SSO1666 1521245 - 1521631 + | hypothetical protein SSO1667 1521636 - 1522718 + | hypothetical protein huyA-like 1522660 - 1524249 + | N-methylhydantoinase A related protein (huyA-like) SSO1671 1525270 - 1524224 - | hypothetical protein TERM 545 1524972 - 1524991 + g 73 -5.8 -4.39002 | opp_overlap 1524972 CCACCTATTTCAATA GAAGTTAT TTTA GTAACTTC TTTTCTCAAAAATTT SSO1672 1526503 - 1525316 - | transposase ISC1316 TERM 546 1525393 - 1525379 - G 84 -11.4 -3.26471 | GGAGCTCCACACTAA GGGTCG CTC CGACCC CGATCCACGTAAGAT SSO1673 1527437 - 1527105 - | hypothetical protein SSO1674 1527799 - 1527413 - | hypothetical protein TERM 547 1527954 - 1527928 - H 74 -9.5 -2.6927 | overlap 1527925 ACCCCTTACATATTA GTCAGATCTGT GTAAT ACTGATCTGAC TGGGGTTGAGGCCAT SSO1675 1528090 - 1529271 + | hypothetical protein SSO1676 1529268 - 1530953 + | hypothetical protein TERM 548 1531298 - 1531323 + T 72 -4.9 -4.86001 | AACATAGCGTGTAGA TTCAGATTA AAGAGAGA TAATCTGAA TTTTTATCACGTGGT TERM 549 1531371 - 1531344 - T 100 -21.4 -3.2963 | ATCACGTGGTTAGAA CGGCGTGCAGAG CGTC CTCTGCACGCCG AGGAAGTTAGAGAAG SSO1678 1532343 - 1531378 - | transposase ISC1439 SSO1679 1533600 - 1532572 - | transposase ISC1250 TERM 550 1533533 - 1533572 + g 95 -11.6 -4.48741 | overlap 1533534 TTGAGATGTGTAAGC TCTTCTATGACCTCACTT GGCT GAGTGAGGTTGTAGAGGG TTTTCTCGTCAATTG TERM 551 1533534 - 1533571 + g 90 -12.9 -3.28522 | overlap 1533533 TGAGATGTGTAAGCT CTTCTATGACCTCACTT GGCT GAGTGAGGTTGTAGAGG GTTTTCTCGTCAATT SSO1680 1534379 - 1534678 + | hypothetical protein SSO1681 1535273 - 1535605 + | partial transposase in ISC1316 SSO1683 1536595 - 1536092 - | hypothetical protein SSO1682 1535774 - 1536145 + | partial transposase in ISC1316 TERM 552 1536159 - 1536146 - GT 70 -8.1 -3.06831 | opp_overlap 1536121 1536153, overlap 1536150 GTAAGTCTCATTTAA GGGAG TTCC CTCCC TTGAAAATACGTGAG SSO8684 1536849 - 1536595 - | third ORF in transposon ISC1173 SSO8685 1537022 - 1536846 - | transposon ISC1173 Orf1 TERM 553 1537026 - 1536984 - G 100 -14.3 -3.31589 | opp_overlap 1536982 AATCATAAGTATTAA TTGTGCGAGGGTTACGAGG TTCAT CCTGGTAACCCTCACAAAA AATCTCGTAACCCTC TERM 554 1537280 - 1537294 + H 88 -11.4 -3.20382 | opp_overlap 1537277 ATCCTACACAGATCG GGGTCG GAA CGACCC TTAGTGCCTGTGGAG TERM 555 1537373 - 1537354 - H 71 -9.2 -2.57136 | opp_overlap 1537347 1537354 1537351, overlap 1537346 1537353 GTATGAAGCAGGAAG CCCTGTCC GTTA GGGCAGGG TAGTTCACTTTGGAA TERM 556 1537354 - 1537373 + H 86 -11.4 -2.81888 | opp_overlap 1537346 1537353 1537354, overlap 1537347 1537351 GTATGAAGCAGGAAG CCCTGTCC GTTA GGGCAGGG TAGTTCACTTTGGAA SSO8687 1537652 - 1537918 + | partial transposase ISC1190 TERM 557 1537991 - 1537965 - f 88 -11.7 -2.88375 | overlap 1537962 ATATAAAACATATTA GTCAGATCTGC GTAAT ACAGATCTGAC TGGGGTTGAGGCCGT SSO1684 1538100 - 1538882 + | partial transposon ISC1190 SSO1686 1539641 - 1540336 + | hypothetical protein SSO1688 1541264 - 1540629 - | partial transposase ISC1359 TERM 558 1541212 - 1541240 + g 89 -11 -4.09827 | ATCTTGAGGGCAGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC SSO1689 1541630 - 1542004 + | hypothetical protein SSO1690 1541979 - 1542281 + | hypothetical protein SSO1691 1542451 - 1543104 + | hypothetical protein tynA 1545244 - 1543262 - | tyramine oxidase TERM 559 1545328 - 1545306 - H 72 -7.2 -3.90328 | overlap 1545315 TATAATTTGTACAAA TATATATTAC TAG GTAATACATA GAAATATCAAGTATT SSO1693 1545396 - 1546784 + | amino acid transporter-like protein SSO1695 1548416 - 1547520 - | transposase ISC1395 SSO8725 1548839 - 1549069 + | transposon ISC1491 Orf1 SSO1697 1549199 - 1549657 + | second ORF in transposon ISC1491 SSO1699 1549654 - 1550073 + | ORF in transposon ISC1491 TERM 560 1550177 - 1550136 - T 100 -13.1 -3.01712 | opp_overlap 1550127 1550136 1550139 TTTTGGTGGGGAAGA CCCGGTGTTATCACCTTGT CTTC ACCACGTGATAATACCGGG TTCCTCACCTTAAAC TERM 561 1550136 - 1550177 + T 100 -15.3 -3.18681 | opp_overlap 1550136, overlap 1550127 1550139 TTTTGGTGGGGAAGA CCCGGTGTTATCACCTTGT CTTC ACCACGTGATAATACCGGG TTCCTCACCTTAAAC SSO1701 1550775 - 1550386 - | hypothetical protein SSO1703 1552050 - 1551295 - | partial transposase ISC1359 TERM 562 1552356 - 1552330 - H 74 -9.4 -2.75039 | overlap 1552346 TATATAGGTTAATTA GCTGGGGAGAGT AAT ATTCTCCTCAGC TGGGGAAAAATGGTC SSO1704 1552366 - 1553097 + | transposon ISC1229 Orf1 SSO1705 1553115 - 1553609 + | transposon ISC1048 Orf1 SSO1706 1553572 - 1554099 + | second ORF in transposon ISC1048 SSO1708 1554089 - 1554484 + | second ORF in transposon ISC1229 TERM 563 1554738 - 1554716 - T 76 -8.5 -3.4178 | opp_overlap 1554716 ATGACTGCATGAGAA CACTCCCTA TAATT TAGAGAGTG TTATTTGGAAGTTTG SSO1709 1555338 - 1554739 - | hypothetical protein SSO1710 1556732 - 1555338 - | hypothetical protein TERM 564 1556424 - 1556410 - G 81 -8.6 -4.13014 | opp_overlap 1556410 CTTATAGGCTTAAAA GGGAAA GGA TTTCCC TTACTAAAGAGCTCC TERM 565 1556410 - 1556424 + g 71 -8.6 -3.14564 | opp_overlap 1556410 CTTATAGGCTTAAAA GGGAAA GGA TTTCCC TTACTAAAGAGCTCC TERM 566 1556860 - 1556897 + r 89 -11.7 -3.05463 | overlap 1556865 ATTCATGTTTACATT TTGAATTCATTATATTT CAAA AATTATAATGAATTCAA TTAAGTGAAAACGGT SSO1711 1557625 - 1557188 - | hypothetical protein TERM 567 1559110 - 1559100 - g 73 -5.4 -4.57073 | GAGGCTTTGGAAAAA GCTA AGC TAGC ATATAGTGCCAAAAT SSO1712 1558011 - 1559351 + | hypothetical protein SSO1714 1560048 - 1559572 - | hypothetical protein TERM 568 1560091 - 1560077 - H 80 -6.4 -4.84761 | opp_overlap 1560065, overlap 1560065 ACATGGGGATAAAAA CCCCAT TAG ATGAGG CTGGCTGTGAAGCCC SSO8760 1560255 - 1560485 + | transposon ISC1491 Orf1 SSO1717 1561029 - 1560502 - | second ORF in transposon ISC1048 SSO1719 1561487 - 1561035 - | transposon ISC1048 Orf1 SSO1720 1561586 - 1562044 + | second ORF in transposon ISC1491 SSO1722 1562041 - 1562457 + | ORF in transposon ISC1491 SSO1725 1563754 - 1563182 - | hypothetical protein SSO1726 1563917 - 1564804 + | hypothetical protein SSO1727 1564797 - 1565336 + | hypothetical protein TERM 569 1566315 - 1566333 + GF 74 -9.6 -2.50994 | overlap 1566303 1566314 GTGGGTCCTTCTTGA CCTGGGTT AGG AACTCAGG CTTCGTGGCCTTGAA SSO1728 1565429 - 1566493 + | transposase ISC1217 TERM 570 1567512 - 1567502 - gf 72 -4 -5.011 | ACCTAAAGAACAAAA TACT TGT AGTA TAAAGCTCGAGCAAG SSO1729 1566444 - 1569419 + | hypothetical protein SSO1730 1569416 - 1570360 + | hypothetical protein SSO1731 1571558 - 1570608 - | transposase ISC1190 TERM 571 1571674 - 1571700 + H 88 -11.7 -2.88375 | overlap 1571671 ACGGCCTCAACCCCA GTCAGATCTGT AATAC GCAGATCTGAC TAATATGTTTTATAT TERM 572 1572091 - 1572111 + G 74 -9.8 -2.63041 | opp_overlap 1572093, overlap 1572087 GTGATTGGCGTCAAG GATCTGGT GAACA ACCAGATC TACGTTAGTATTTTG TERM 573 1572139 - 1572149 + G 73 -3.2 -5.18726 | overlap 1572147 TTGGAAAAGTCAGTA TGGG AAT CTCA TTTTTCTTGTAAAAA SSO1732 1571734 - 1572228 + | partial ORF in transposase ISC1217 SSO1735 1573257 - 1572325 - | partial transposase ISC1359 TERM 574 1573277 - 1573262 - gH 72 -9 -2.60244 | opp_overlap 1573238, overlap 1573258 GCCTTAAGCAAGGCA CTGAGG AGTT CCTCAG GGAAAAGTATTTTAG TERM 575 1573324 - 1573352 + GH 93 -11 -4.09827 | TATCTTGAGGCGGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC rfbB-2 1573177 - 1574229 + | dTDP-glucose 4,6-dehydratase (rfbB-2) TERM 576 1575240 - 1575220 - g 89 -11.1 -4.0896 | opp_overlap 1575209 1575208, overlap 1575209 AAAGGGGGCGGAAAA CTTCGCCTC TTT GAGGCGGAG ATGGATAGCCCCCTT TERM 577 1575407 - 1575421 + G 84 -11.4 -3.20382 | GTTAAGTACCATGCG GGGTGG GAG CCACCC TTAGTGCCTGTGGAG SSO1736 1575173 - 1575508 + | hypothetical protein TERM 578 1575505 - 1575486 - T 71 -9.2 -2.56164 | opp_overlap 1575485 1575481, overlap 1575481 1575485 CTGTGAAGCAGGAAG CTCCCTCC TTCA GGAGGGGG TAGCTCACTTTACTA SSO1739 1576487 - 1575540 - | hypothetical protein TERM 579 1576484 - 1576496 + g 76 -4.9 -4.90302 | TCGAAATATTTTCAA TCATT ACT AATGA TTTATTTTCTTGCTA SSO8813 1577282 - 1577010 - | hypothetical protein TERM 580 1577614 - 1577596 - H 71 -7.5 -3.40611 | opp_overlap 1577596, overlap 1577594 TTTATTTCAAGAAGA TCCCTAA CAGTC TTAGGGA TTATTATATATCCTT TERM 581 1577596 - 1577614 + H 74 -7.5 -3.9467 | opp_overlap 1577596 1577594 TTTATTTCAAGAAGA TCCCTAA CAGTC TTAGGGA TTATTATATATCCTT SSO1740 1578607 - 1579065 + | hypothetical protein TERM 582 1579828 - 1579810 - T 82 -6.1 -5.02476 | ATATGGGTTAAAAAA GTAGTTA TGTAT TAACTAC AGTGAACTTAGCTAA doxA 1580329 - 1579814 - | terminal quinol oxidase, subunit II (doxA) doxD 1580877 - 1580326 - | terminal quinol oxidase, subunit (doxD) SSO1744 1581819 - 1581265 - | second ORF in transposon ISC1058 SSO1745 1582051 - 1581734 - | transposon ISC1058 Orf1 SSO1746 1582629 - 1583024 + | hypothetical protein SSO1747 1583348 - 1583689 + | partial transposase in ISC1234 SSO1749 1585149 - 1584580 - | second ORF in transposon ISC1078 SSO1748 1584094 - 1584663 + | transposon ISC1395 Orf1 SSO1750 1585568 - 1585110 - | transposon ISC1078 Orf1 TERM 583 1585346 - 1585365 + gH 77 -9.3 -3.30969 | TCTTTTCTAAGATTC GGACGAG CTTTTC CTCGTCC TTCAGTTTCGTGGGT SSO1751 1585642 - 1586121 + | second ORF in transposon ISC1395 SSO1752 1587105 - 1588097 + | hypothetical protein SSO1755 1589734 - 1589036 - | hypothetical protein SSO1757 1591355 - 1590345 - | potassium channel protein, putative SSO1758 1592820 - 1592485 - | hypothetical protein TERM 584 1593337 - 1593322 - H 70 -8.2 -3.05384 | opp_overlap 1593304 CCTGCCCTCACGGAA GGGGAC TTTC GCCCCC TTAACCCCCATTAAG TERM 585 1594888 - 1594872 - g 71 -9.5 -2.57404 | opp_overlap 1594871 1594874, overlap 1594871 1594867 1594874 AGAGGAAGTACGAAG GAGATCT CTT AGATCTC GTTAGCTATCCTCAA SSO1759 1594043 - 1595182 + | protease, putative SSO8861 1595479 - 1595237 - | hypothetical protein SSO1760 1596495 - 1595911 - | ORF in partial transposon ISC1778 SSO1762 1597291 - 1596569 - | hypothetical protein SSO1763 1598331 - 1597288 - | hypothetical protein SSO1764 1598818 - 1598378 - | hypothetical protein SSO1765 1599287 - 1598847 - | hypothetical protein zfx-2 1599439 - 1599594 + | ferredoxin (amino-end fragment) (zfx-2) TERM 586 1599698 - 1599682 - T 80 -5.3 -5.28176 | opp_overlap 1599685 TTCAGCCATAAAAAA TAATATA ATA TATATTA ATGAGGGAAAATACA SSO1766 1600218 - 1599778 - | second ORF in transposon ISC1212 SSO8875 1600553 - 1600302 - | transposon ISC1212 Orf1 SSO1767 1601031 - 1601933 + | hypothetical protein SSO1768 1601950 - 1603074 + | hypothetical protein SSO1769 1603598 - 1603299 - | ORF in transposon ISC1491 SSO1772 1604332 - 1603595 - | transposon ISC1491 Orf1 SSO1773 1605760 - 1604963 - | multidrug ABC transporter SSO1774 1606950 - 1606108 - | hypothetical protein SSO8892 1607255 - 1606986 - | hypothetical protein TERM 587 1607774 - 1607746 - g 89 -11 -4.09827 | GAGAATACAACTAAA CCGGCGAAGTTC AACCG GGACTTCGCCAG GTCCGCCCTCAAGAT SSO1775 1607647 - 1608774 + | transposase ISC1359 SSO1777 1609060 - 1609854 + | hypothetical protein TERM 588 1610133 - 1610158 + T 72 -4.9 -4.86001 | AACATAACGTGTAGA TTCAGATTA AAGGGAGA TAATCTGAA TTTTTATCACGTGGT TERM 589 1610206 - 1610179 - T 100 -15.6 -3.2963 | ATCACGTGGTTAGAA CGGTGTGCAGAG CGTC CTCTGCACGCCG AGGAAGTTAGAGAAG SSO1779 1611178 - 1610213 - | transposase ISC1439 SSO1780 1611934 - 1613340 + | polysaccharide biosynthesis related protein rfbB-3 1614982 - 1614044 - | dTDP-glucose 4,6-dehydratase (rfbB-3) SSO1782 1616013 - 1614979 - | sugar phosphate nucleotydyl transferase rfbD-2 1616639 - 1616016 - | dTDP-4-dehydrorhamnose reductase (rfbD-2) SSO1784 1617122 - 1617568 + | hypothetical protein SSO8906 1617553 - 1617747 + | hypothetical protein SSO1785 1618384 - 1619436 + | hypothetical protein SSO8910 1619999 - 1619724 - | hypothetical protein SSO1786 1620614 - 1621045 + | hypothetical protein SSO1787 1621252 - 1621977 + | hypothetical protein SSO1788 1621977 - 1622483 + | hypothetical protein TERM 590 1622811 - 1622774 - f 89 -11.7 -3.05463 | overlap 1622779 ACCGTTTTCACTTAA TTGAATTCATTATAATT TTTG AAATATAATGAATTCAA AATGTAAACATGAAT TERM 591 1623261 - 1623247 - g 71 -8.6 -3.14564 | opp_overlap 1623247 GGAGCTCTTTAGTAA GGGAAA TCC TTTCCC TTTTAAGCCTATAAG TERM 592 1623247 - 1623261 + G 81 -8.6 -4.13014 | opp_overlap 1623247 GGAGCTCTTTAGTAA GGGAAA TCC TTTCCC TTTTAAGCCTATAAG SSO1789 1622939 - 1624333 + | hypothetical protein SSO1790 1624333 - 1624932 + | hypothetical protein TERM 593 1624933 - 1624955 + T 76 -8.5 -3.4178 | opp_overlap 1624933 CAAACTTCCAAATAA CACTCTCTA AATTA TAGGGAGTG TTCTCATGCAGTCAT SSO1791 1625582 - 1625187 - | second ORF in transposon ISC1229 SSO1793 1626099 - 1625572 - | second ORF in transposon ISC1048 SSO1794 1626556 - 1626062 - | transposon ISC1048 Orf1 SSO1795 1627305 - 1626574 - | transposon ISC1229 Orf1 TERM 594 1627315 - 1627341 + H 74 -9.4 -2.75039 | overlap 1627306 GACCATTTTTCCCCA GCTGAGGAGAAT ATT ACTCTCCCCAGC TAATTAACCTATATA SSO1796 1627621 - 1628376 + | partial transposase ISC1359 TERM 595 1628562 - 1628552 - gf 70 -3.2 -4.95155 | TTTATATCAGAAAAA TGAG ATT CCCA TACTGAAGTCAAACA SSO1798 1628412 - 1628729 + | partial transposase in ISC1229 SSO1799 1628665 - 1629027 + | partial transposase in ISC1229 SSO1800 1629626 - 1629186 - | second ORF in transposon ISC1212 SSO8936 1629961 - 1629710 - | transposon ISC1212 Orf1 SSO8938 1630517 - 1630290 - | hypothetical protein SSO1801 1631898 - 1630939 - | transposase ISC1234 TERM 596 1632032 - 1632007 - H 77 -7.7 -4.07246 | opp_overlap 1632012, overlap 1632010 TCACGTGAAAGTAAA CAGGATTAACA AATA TGTTAATCTTG AGGGGAGGGGTTAAG dbpA 1632138 - 1632359 + | DNA-binding protein DbpA SSO1802 1632858 - 1633280 + | hypothetical protein TERM 597 1634153 - 1634139 - g 100 -5 -6.30182 | overlap 1634140 GGAGAGAAAAAAAAA CCGAAA AGG TTTCGA AGGGGACTTACCCAC SSO1803 1633733 - 1634242 + | transposon ISC1212 Orf1 SSO1804 1634300 - 1634713 + | second ORF in transposon ISC1212 zfx-2 1634878 - 1635063 + | ferredoxin (carboxy-end fragment) (zfx-2) TERM 598 1635091 - 1635103 + T 75 -4.9 -5.10877 | opp_overlap 1635091 1635089 AAAATAGCAGTAATA GAAAA TCT TTTTC TTTTTAATTTATTCT SSO1805 1635656 - 1635126 - | hypothetical protein SSO1806 1637694 - 1635712 - | hypothetical protein TERM 599 1636570 - 1636556 - G 73 -8.6 -3.42574 | GCAACGTCACTACAA CTTACC ATG GGTAAG GACTGTACTATCACC SSO1807 1638670 - 1638041 - | hypothetical protein SSO1808 1639645 - 1638947 - | hypothetical protein SSO1809 1639888 - 1640421 + | hypothetical protein SSO1810 1640455 - 1641642 + | hypothetical protein pepQ-like1 1642833 - 1641643 - | Prolidase (Xaa-Pro dipeptidase) (pepQ-like1) SSO1812 1643492 - 1642893 - | hypothetical protein SSO8979 1644216 - 1644461 + | hypothetical protein SSO1813 1644786 - 1644442 - | hypothetical protein SSO1814 1646012 - 1645053 - | transposase ISC1234 SSO1815 1646067 - 1646849 + | hypothetical protein SSO1816 1646872 - 1648302 + | hypothetical protein SSO8998 1648803 - 1648543 - | hypothetical protein cysA-2 1649681 - 1648800 - | thiosulfate sulfurtransferase SSO1818 1651222 - 1650236 - | hypothetical protein SSO1820 1652232 - 1651486 - | hypothetical protein TERM 600 1651752 - 1651770 + gH 74 -9.6 -2.62398 | overlap 1651751 TTAATGCTAATGCTC CTAACGCT AAG GGCGTTAG ATTAATATGCTTTTT TERM 601 1652438 - 1652448 + Gr 70 -3.2 -4.95155 | CTTTTGATGTCAGTA TGGG AAT CTCA TTTTTCTGATATAAA SSO1819 1652213 - 1652527 + | hypothetical protein SSO1822 1653490 - 1652624 - | partial transposase ISC1359 SSO1823 1653672 - 1654013 + | hypothetical protein SSO1824 1655258 - 1653996 - | hypothetical protein TERM 602 1654992 - 1655018 + g 73 -3.1 -5.20216 | gap 1, opp_overlap 1654993, overlap 1654993 GTGGGAAAATGGAAA ATGGC-CTATAT CATG ATATAGCGCCAG TTTTTTGATAATCTC TERM 603 1655017 - 1654993 - G 76 -6.6 -4.4267 | gap 1, opp_overlap 1654992 1654993 TGGGAAAATGGAAAA TGGC-CTATAT CATG ATATAGCGCCA GTTTTTTGATAATCT SSO1825 1656211 - 1655768 - | second ORF in transposon ISC1212 SSO1826 1656723 - 1656295 - | transposon ISC1212 Orf1 TERM 604 1657273 - 1657263 - R 74 -3.2 -5.41359 | AATTAAAGCAAAAAA TGGA TTA CCCA TGAGAAAAGTAAAGA SSO1827 1657837 - 1657250 - | hypothetical protein SSO1829 1659307 - 1658048 - | second ORF in transposon ISC1778 TERM 605 1658736 - 1658750 + g 73 -8.6 -3.29511 | AGAAAGTTTAATGGT GTTACC CAC GGTAAC TTGTAACGAAATGGC TERM 606 1659242 - 1659266 + g 79 -10.8 -3.09671 | overlap 1659246 CTCACTATTCTTGAT GGAGTACGTG AAGTA CACGTATTCC TCTTCCGGTTCAAAT SSO1830 1659863 - 1659285 - | transposon ISC1778 Orf1 TERM 607 1659687 - 1659703 + g 72 -3.7 -4.94902 | overlap 1659687 AGATGATACTCTGGC GTAAAGT ATT ACTTTTC TTTTTCTAATAATTC TERM 608 1659687 - 1659698 + g 74 -3 -5.3658 | overlap 1659687 AGATGATACTCTGGC GTAA AGTA TTAC TTTTCTTTTTCTAAT TERM 609 1660349 - 1660338 - g 74 -4.4 -4.98468 | AGAAGAAAAAAAGAA TCTG ACTC CAGA TAAAATTGAAGCGGA SSO1831 1660009 - 1660527 + | hypothetical protein SSO1832 1660981 - 1660613 - | second ORF in transposon ISC1225 SSO1833 1661897 - 1661199 - | transposon ISC1225 Orf1 TERM 610 1661867 - 1661846 - G 71 -8.7 -3.14344 | opp_overlap 1661849 1661851, overlap 1661851 TATTTTGGTGAGGAA GACCAGGTG TTAT CACCTTGTC TTCACCACGTGATAA TERM 611 1662286 - 1662266 - g 75 -6.9 -4.26871 | opp_overlap 1662266, overlap 1662262 1662280 GAATTTATGAAGAAA CTTGCTATG AAG CACAACAAG TTGCTGAAAAATCCG SSO1834 1662175 - 1662567 + | hypothetical protein SSO1835 1662548 - 1662928 + | hypothetical protein SSO9043 1663384 - 1663148 - | transposase SSO1837 1664752 - 1663853 - | transposase ISC1058 SSO1838 1664860 - 1665348 + | hypothetical protein pqqE-4 1665410 - 1666546 + | coenzyme PQQ synthesis protein E (pqqE-4) pqqE-5 1666519 - 1667571 + | coenzyme PQQ synthesis protein E (pqqE-5) gapN-2 1667701 - 1669113 + | glyceraldehyde-3-phosphate dehydrogenase, NADP dependent (gapN-2) TERM 612 1670363 - 1670377 + G 84 -11.4 -3.26471 | ATCTTACGTGGATCG GGGTCG GAG CGACCC TTAGTGTGGAGCTCC SSO1844 1669310 - 1670440 + | transposase ISC1316 SSO1845 1670734 - 1671339 + | transposon ISC1217 Orf1 SSO1847 1671913 - 1671467 - | second ORF in transposon ISC1359 SSO1850 1672634 - 1671786 - | transposon ISC1359 Orf1 TERM 613 1672459 - 1672444 - GH 72 -9 -2.60244 | opp_overlap 1672420, overlap 1672440 GCCTTAAGCAAGGCA CTGAGG AGTT CCTCAG GGAAAAGTATTTTAG TERM 614 1672507 - 1672535 + gH 93 -11 -4.09827 | ATCTTGAGGGCGGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC TERM 615 1672984 - 1673002 + G 71 -9.6 -2.50994 | overlap 1672972 1672983 GTGGGTCCTTCTTGA CCTGGGTT AGG AACTCAGG CTTCGTGGCCTTGAA SSO1851 1672677 - 1673162 + | second ORF in transposon ISC1217 SSO1853 1673848 - 1673441 - | second ORF in transposon ISC1359 SSO1856 1674494 - 1673721 - | transposon ISC1359 Orf1 TERM 616 1674394 - 1674379 - GR 72 -9 -2.60244 | opp_overlap 1674355, overlap 1674375 GCCTTAAGCAAGGCA CTGAGG AGTT CCTCAG GGAAAAGTATTTTAG TERM 617 1674442 - 1674470 + gr 93 -11 -4.09827 | ATCTTGAGGGCGGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC SSO1857 1675590 - 1674961 - | hypothetical protein SSO1858 1676370 - 1675627 - | hypothetical protein htpX-1 1677357 - 1676422 - | heat shock protein (htpX-1) uppP 1678214 - 1677378 - | undecaprenyl pyrophosphate phosphatase SSO1861 1678371 - 1679213 + | hypothetical protein TERM 618 1679834 - 1679822 - gf 73 -5.5 -4.55887 | opp_overlap 1679822 GGCTAAAAACATAAA GGCTA GGT CAGCC TCATTGAAAAGTAAA SSO1863 1679250 - 1680446 + | multidrug ABC transporter SSO1864 1680379 - 1681323 + | microsomal dipeptidase SSO1865 1681749 - 1682180 + | hypothetical protein SSO1866 1682562 - 1682173 - | hypothetical protein SSO1867 1682955 - 1683302 + | hypothetical protein SSO1868 1683320 - 1683934 + | hypothetical protein SSO9092 1684499 - 1684224 - | hypothetical protein SSO1869 1684621 - 1685151 + | hypothetical protein TERM 619 1685287 - 1685272 - g 76 -3.2 -5.38497 | opp_overlap 1685274, overlap 1685274 ATGGAAAGCAAAAAA CTCCTA TTAA TAGGTG TGATAATTGCAGTTG SSO1870 1685257 - 1685937 + | hypothetical protein SSO1871 1686031 - 1686990 + | transposase ISC1234 SSO1872 1687514 - 1687137 - | hypothetical protein TERM 620 1687569 - 1687547 - H 73 -9.2 -2.83748 | opp_overlap 1687544, overlap 1687544 1687540 ACAGAAATTTAACTA TGCGTTTGAA AGT TTCTAACGCA AACTAATATTCAATT SSO1873 1687602 - 1688417 + | hypothetical protein SSO1874 1688414 - 1688794 + | hypothetical protein SSO1875 1689495 - 1688968 - | hypothetical protein SSO1876 1690343 - 1689573 - | hypothetical protein SSO9115 1690563 - 1690351 - | hypothetical protein SSO1877 1690648 - 1691007 + | hypothetical protein SSO1878 1691385 - 1692494 + | hypothetical protein TERM 621 1694129 - 1694118 - g 71 -4.4 -4.83269 | opp_overlap 1694118, overlap 1694111 AGATGATACGAAAAA GAGA ACTC TCTC GTTACTCTCACTCCT SSO1879 1692724 - 1694721 + | ATP-dependent helicase, putative SSO1880 1695507 - 1694683 - | hypothetical protein doxD-like 1695924 - 1696445 + | terminal quinol oxidase, subunit, putative (doxD-like) doxA-like 1696452 - 1696973 + | terminal quinol oxidase, subunit II, putative (doxA-like) SSO9134 1697487 - 1697284 - | partial ORF from ISC1778 SSO9135 1697749 - 1697510 - | partial ORF from ISC1778 TERM 622 1697624 - 1697646 + g 100 -10 -5.01535 | overlap 1697626 TTTCTGTGTGCTCGA TGGTACTCTA GCG TAGAGTACTA TTTTTCTCCTTCTCA TERM 623 1697626 - 1697644 + g 89 -10.4 -4.12226 | overlap 1697624 TCTGTGTGCTCGATG GTACTCTA GCG TAGAGTAC TATTTTTCTCCTTCT TERM 624 1698013 - 1698024 + H 70 -4.4 -4.82111 | TATTACCTACTTTGC TGAG ATTT CTCA TTATTTTTATTTTCT SSO9136 1698059 - 1698334 + | hypothetical protein SSO1883 1699448 - 1698489 - | transposase ISC1234 SSO1884 1699694 - 1700038 + | hypothetical protein SSO1885 1700448 - 1701320 + | hypothetical protein SSO1886 1702997 - 1701327 - | thermopsin precursor, SSO1888 1704038 - 1703139 - | transposase ISC1058 SSO1889 1705134 - 1704103 - | ATP-dependent RNA helicase SSO1890 1705197 - 1706417 + | hypothetical protein TERM 625 1706432 - 1706470 + GT 100 -9.1 -4.98436 | gap 1, opp_overlap 1706431 1706430 AAAATTTAAATAACT TCAAGGCTTTCCATATCC ACAT GGATAAG-AAAGTCTTGA TTTTTATAGTATTAA SSO1891 1706392 - 1706970 + | hypothetical protein SSO1892 1708058 - 1707093 - | hypothetical protein SSO1893 1709634 - 1708042 - | ABC transporter, ATP binding protein. SSO1894 1710356 - 1709631 - | hypothetical protein SSO1896 1711084 - 1710446 - | 2-haloalkanoic acid dehalogenase SSO1897 1712175 - 1711162 - | transposase ISC1078 TERM 626 1711953 - 1711972 + g 76 -9.3 -3.30969 | TCTTTTCTAAGATTC GGACGAG CTTTTC CTCGTCC TTCAGTTTCGTGGGT SSO1898 1712368 - 1712940 + | hypothetical protein SSO1899 1714087 - 1713563 - | hypothetical protein TERM 627 1714530 - 1714517 - H 71 -5.3 -4.62069 | opp_overlap 1714517 AAAAAGATGATAAAA GGAAT GATC ATTCC GTTATTAACACTCCC TERM 628 1714802 - 1714818 + H 71 -8.1 -3.31263 | opp_overlap 1714801 1714798 GTCTTATGATATTAC CTTAAGT TAT ACTTAAG TTATAACCGTAAAGT ssh7A 1714872 - 1715066 + | 7 KD DNA-binding protein (SSO7D) (SSH7A) (ssh7A /Sso7d-2) SSO1900 1717454 - 1715787 - | NADH oxidase TERM 629 1716476 - 1716527 + g 78 -9.6 -3.51924 | opp_overlap 1716487 ACCTAATACATGGCC TTATTGGCAAATCCCTTTTAGCTT TCTC AAGCCAATAGGGATCAGCTAATAA TTGTCTCCCTAACAC TERM 630 1716516 - 1716487 - G 80 -10.1 -3.57144 | opp_overlap 1716476 GGCCTTATTGGCAAA TCCCTTTTAGCTT TCTC AAGCCAATAGGGA TCAGCTAATAATTGT SSO1901 1718372 - 1717572 - | hypothetical protein TERM 631 1718305 - 1718325 + g 72 -8.3 -3.57587 | opp_overlap 1718305 1718304, overlap 1718303 1718299 AATCCGGATGAAAAG CCTAAAGGT TTA ACCTTAAGG TATTCTTTAAGTGAT TERM 632 1718408 - 1718418 + r 100 -2.6 -6.95634 | TAACTCCCTTAATCC TTAA ACA TTAA TTTTTTTTTTTTTCA SSO1902 1719182 - 1718631 - | hypothetical protein TERM 633 1720504 - 1720491 - g 76 -6.7 -4.46775 | opp_overlap 1720489 1720491 TATTGAAAAGATAAA TTGGG ATGA CCCAA TAGTTTTACTATACA acsA-3 1720018 - 1721391 + | Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-3) SSO1904 1722510 - 1721545 - | transposase ISC1439 acsA-3 1722738 - 1722962 + | Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-3) SSO1905 1724466 - 1723000 - | allantoin permease TERM 634 1725758 - 1725772 + G 70 -6.4 -4.07885 | opp_overlap 1725758 TTGCTAAATAGTAAG TGGGCT AAT AGTCCA TTTTACAGCGAGCTG SSO1906 1724861 - 1726711 + | amino acid transporter-like protein gdhA-2 1727019 - 1728281 + | NAD specific glutamate dehydrogenase (gdhA-2) SSO1908 1728613 - 1728311 - | hypothetical protein SSO1909 1730149 - 1728731 - | multidrug resistance protein SSO1910 1730365 - 1730715 + | hypothetical protein SSO1912 1731223 - 1730726 - | hypothetical protein TERM 635 1731247 - 1731257 + Gr 81 -4 -5.58454 | CTACACTTTACTCCC CTTA ATA TAAG TTTTTTTAATATCCC TERM 636 1731330 - 1731344 + Gr 72 -3.6 -5.00884 | opp_overlap 1731340 CGAACATGGTGTATT TAGGAT AAG ATTCTA TTTTTTAGAAAAAAT SSO1911 1731193 - 1731696 + | hypothetical protein rpoM-2 1731971 - 1731693 - | DNA-directed RNA polymerase, subunit M (rpoM-2) SSO1913 1732768 - 1731989 - | hypothetical protein SSO1914 1733786 - 1733373 - | hypothetical protein TERM 637 1734568 - 1734594 + H 88 -11.7 -2.88375 | overlap 1734565 AAACGGCCTCACCCA GTCAGATCTGT ATTAC ACAGGTCTGAC TAATATGTTTTATAT SSO1915 1734675 - 1735316 + | transposon ISC1913 Orf1 SSO1916 1735288 - 1736514 + | second ORF in transposon ISC1913 SSO1917 1736782 - 1737102 + | hypothetical protein SSO1918 1738631 - 1737369 - | hypothetical protein TERM 638 1738626 - 1738647 + g 72 -7.5 -3.70469 | opp_overlap 1738626 TACCATATTCATAAA TATCATATT CTAA AATATGATA TTTAAAATTATGCTT TERM 639 1738647 - 1738626 - G 74 -7.5 -3.95787 | opp_overlap 1738626 TACCATATTCATAAA TATCATATT CTAA AATATGATA TTTAAAATTATGCTT TERM 640 1739142 - 1739126 - g 72 -3.7 -4.89339 | AAGGAGGGAGAAAAA TGCCTAT TCT ACAAGCA AAGAAAAGGAAGAAA SSO1919 1738904 - 1739230 + | transposon ISC1395 Orf1 SSO9241 1739504 - 1739719 + | second ORF in transposon ISC1395 SSO1920 1739988 - 1739677 - | hypothetical protein SSO1921 1740423 - 1740013 - | hypothetical protein SSO9250 1740915 - 1741211 + | partial ORF in transposon ISC1212 TERM 641 1741840 - 1741821 - f 71 -6.6 -4.14511 | opp_overlap 1741821 AATTTTATTGGAAAA TTATACAA TTAT TTGTATAA TACTTGTTAATATAT TERM 642 1742297 - 1742309 + G 76 -7.7 -4.12603 | GAGGGAAGATCGTGA GAGTC ATT GACTC TTCTTCTTTAGTAAA SSO1922 1742293 - 1742688 + | hypothetical protein TERM 643 1743461 - 1743444 - T 70 -8.4 -3.06515 | opp_overlap 1743444 1743443, overlap 1743443 1743453 1743454 CTTTATTGGCAAAAC GGGCGA CAAGCC TCGCCC CTTCTAGGGGCAGGG TERM 644 1743476 - 1743454 - T 82 -11.2 -2.59323 | opp_overlap 1743444 1743443, overlap 1743444 1743443 1743453 AAAACGGGCGACAAG CCTCGCCCCT TCT AGGGGCAGGG TAAAAGTTTTTAAAT TERM 645 1743922 - 1743905 - T 100 -12.7 -4.12599 | AAGAATTCGTTAAAA TCCCGGG AAAA CCCGGGA ATAGTAAAAAAGAGA rfbC-2 1745559 - 1745029 - | dTDP-4-dehydrorhamnose 3,5 epimerase (rfbC-2) SSO1924 1745703 - 1746776 + | transposase ISC1229 TERM 646 1746795 - 1746827 + T 70 -8.4 -3.11272 | AACCCTTCCCCTTAA TCGCCACCTGGGTT GAAAG GACCCACGTGGCAA TGTTAGCTAATACTA SSO9268 1747112 - 1746840 - | hypothetical protein SSO9270 1747380 - 1747084 - | second ORF in partial transposon ISC1913 TERM 647 1747414 - 1747382 - H 71 -7.8 -3.52162 | overlap 1747378 1747385 CTTATATAAAACATA TTAGTCAGATCTGT GTAAT ACAGATCTGACTGG GGTGTAGGCCGTGAC TERM 648 1747411 - 1747385 - H 100 -13.9 -2.88375 | overlap 1747382 1747378 ATATAAAACATATTA GTCAGATCTGT GTAAT ACAGATCTGAC TGGGGTGTAGGCCGT SSO1926 1747527 - 1748480 + | transposase ISC1190 SSO1927 1748907 - 1748470 - | transposon ISC1913 Orf1 SSO1928 1749076 - 1749408 + | hypothetical protein SSO1929 1749377 - 1749766 + | hypothetical protein gdhA-3 1751138 - 1749834 - | NAD specific glutamate dehydrogenase (gdhA-3) TERM 649 1750976 - 1750996 + g 78 -11.2 -2.60763 | opp_overlap 1750976, overlap 1750975 TCTTAACTTGTATAA CCCTTTCC GGCTG GGAAAGGG CTTCTAGAGTATCAA TERM 650 1750996 - 1750976 - G 82 -11.2 -3.33261 | opp_overlap 1750976 1750975 TCTTAACTTGTATAA CCCTTTCC GGCTG GGAAAGGG CTTCTAGAGTATCAA SSO1931 1751338 - 1751796 + | hypothetical protein SSO1932 1751793 - 1752224 + | hypothetical protein TERM 651 1752574 - 1752562 - T 75 -4.9 -4.98857 | opp_overlap 1752562 1752565, overlap 1752553 ATGTAATTATAAAAA CTTTT ATA AAAAG ATTATAATTCCTTTA SSO1933 1753430 - 1752576 - | hypothetical protein SSO1934 1753659 - 1754552 + | antibiotic ABC transporter ATP-binding protein SSO1936 1754545 - 1755378 + | hypothetical protein TERM 652 1755507 - 1755493 - f 72 -9.2 -2.67803 | GCTTCACCAAAGTCA CGGGGC ATT GCCCCA CTCATACCCCTCCGC SSO1937 1756303 - 1756749 + | partial transposase in ISC1225 TERM 653 1756786 - 1756745 - f 100 -17.5 -2.72463 | opp_overlap 1756747 1756776, overlap 1756782 1756785 ATTTATTTTTAAGGA GGTGATTTTGGGTCTACCG GTGA CGGTAGACCCAAAATCATT TTACAAAAAATAATT TERM 654 1756747 - 1756784 + F 100 -24.5 -4.08216 | opp_overlap 1756745 1756782, overlap 1756776 TTATTTTTAAGGAGG TGATTTTGGGTCTACCG GTGA CGGTAGACCCAAAATCA TTTTACAAAAAATAA TERM 655 1756776 - 1756805 + F 70 -8.1 -3.11634 | opp_overlap 1756745 1756782 1756785, overlap 1756747 CCGGTGACGGTAGAC CCAAAATCATTTT ACAA AAAATAATTTTGG TTGGGTAATATCAGA TERM 656 1756914 - 1756935 + G 71 -8.7 -3.14344 | opp_overlap 1756893 1756919, overlap 1756895 TTATCACGTGGTGAA GACAAGGTG ATAA CACCTGGTC TTCCTCACCAAAATA SSO1938 1756848 - 1757978 + | transposase ISC1225 TERM 657 1758102 - 1758074 - f 76 -7.4 -4.29929 | opp_overlap 1758074 1758074 1758076 1758088 AGTAAATTTAATAAA TACGGTGCCGTA ATTTA TACGGTGCCGTA TAATTGCTATTTAAC TERM 658 1758074 - 1758102 + F 88 -11.8 -2.8742 | opp_overlap 1758074, overlap 1758074 1758076 1758088 AGTAAATTTAATAAA TACGGTGCCGTA ATTTA TACGGTGCCGTA TAATTGCTATTTAAC TERM 659 1758076 - 1758100 + F 79 -10 -2.9805 | opp_overlap 1758074, overlap 1758074 1758074 1758088 TAAATTTAATAAATA CGGTGCCGTA ATTTA TACGGTGCCG TATAATTGCTATTTA SSO1939 1758106 - 1759269 + | hypothetical protein thiC-2 1759304 - 1760605 + | thiamine biosynthesis protein ThiC TERM 660 1760607 - 1760618 + F 81 -4.4 -5.45802 | opp_overlap 1760607 CATCATCCCTATAAG TACG GATT CGTA TTTTTATTTTCAAAC TERM 661 1761163 - 1761184 + G 74 -9.5 -3.02836 | overlap 1761162 1761159 AGCCAAGGGTATAGG TGCAATTCC AGGA GGGATTGCA GTTATTTCATCATTT ilvC-3 1760648 - 1761646 + | ketol-acid reductoisomerase (ilvC-3) SSO1943 1761916 - 1762989 + | transposase ISC1229 TERM 662 1763007 - 1763039 + F 70 -8.4 -3.11272 | opp_overlap 1763010 AAGCCCTCCCCCGAA TCACCACGTGGGTT GAAAG GACCCACGTGGCAA TGTTAGCTAGTACTA TERM 663 1763036 - 1763010 - f 100 -13.8 -2.70932 | opp_overlap 1763007 CCCTCCCCCGAATCA CCACGTGGGT TGAAAGG ACCCACGTGG CAATGTTAGCTAGTA TERM 664 1763194 - 1763177 - f 74 -2.1 -5.52023 | ATCATCAATAAAAAA TACATTA GTAA TAATATA TAGACATAAACTCAC SSO1945 1763430 - 1763837 + | hypothetical protein SSO1946 1764932 - 1764009 - | transposase ISC1290 TERM 665 1764899 - 1764957 + g 70 -8.3 -3.30439 | opp_overlap 1764899, overlap 1764933 AATGTTCATAGGGAA CCGGGCCGTTGTAGTATTCTATCCA-ATG CTT CATGTGAATCGG-TACTACATCGTCCCGG TTCCCTTTAAGTATT SSO1947 1765074 - 1765526 + | hypothetical protein SSO1948 1767983 - 1765998 - | hypothetical protein SSO1949 1769048 - 1768044 - | endoglucanase precursor SSO1951 1770303 - 1769353 - | transposase ISC1190 TERM 666 1770416 - 1770448 + H 71 -7.8 -3.52162 | overlap 1770412 1770419 GTCACGGCCTACACC CCAGTCAGATCTGT ATTAC ACAGATCTGACTAA TATGTTTTATATAAG TERM 667 1770419 - 1770445 + H 100 -13.9 -2.88375 | overlap 1770416 1770412 ACGGCCTACACCCCA GTCAGATCTGT ATTAC ACAGATCTGAC TAATATGTTTTATAT cpsA-2 1770644 - 1771825 + | thermostable carboxypeptidase (cpsA-2) TERM 668 1772136 - 1772116 - g 73 -3.3 -5.13722 | overlap 1772119 1772132 GTTATCAAAAGAAAA GAACATTTC CTT GAAATGCTA AAAGATAGCAATAAG TERM 669 1772133 - 1772119 - g 81 -7.2 -4.64486 | overlap 1772116 1772132 ATCAAAAGAAAAGAA CATTTC CTT GAAATG CTAAAAGATAGCAAT SSO1953 1771849 - 1772328 + | hypothetical protein SSO1954 1772463 - 1773191 + | dolichyl-phosphate mannose synthase-like protein SSO1956 1773713 - 1773174 - | hypothetical protein SSO1957 1774120 - 1773710 - | hypothetical protein SSO1958 1775268 - 1774144 - | transport membrane protein (permease) TERM 670 1774914 - 1774949 + g 71 -9.3 -2.55484 | gap 1, opp_overlap 1774914, overlap 1774913 1774911 TGTTGGAGTAACTAA CTGCCACTATTTTCAT GGCTG ATGGAAATA-TGGCAG CTGTTATAAGTCCTT SSO1959 1775365 - 1775841 + | hypothetical protein SSO1960 1775885 - 1776751 + | hypothetical protein SSO1961 1776732 - 1777148 + | hypothetical protein SSO1962 1778315 - 1777542 - | hypothetical protein TERM 671 1778506 - 1778547 + r 71 -8.3 -3.19771 | gap 1, overlap 1778505 1778509 AGGAGAAGAGGAATT TAATTTCACCTT-AGGTCGT TAC ACGATATAAAGGTGAGATTA CTTTCTTACTCTTGT SSO1963 1778996 - 1778571 - | hypothetical protein TERM 672 1779210 - 1779155 - H 89 -10.3 -3.91352 | opp_overlap 1779158, overlap 1779156 AGATGCTCAATGAAA CCCCCATGTCCTCGAAGGGAGTGGT TTGACT ACCGCTCCCGTAGACGGCACGGGGA GGGAAATAAGGGCTG TERM 673 1779209 - 1779156 - H 86 -11.6 -2.94329 | opp_overlap 1779158, overlap 1779155 GATGCTCAATGAAAC CCCCATGTCCTCGAAGGGAGTGGT TTGACT ACCGCTCCCGTAGACGGCACGGGG AGGGAAATAAGGGCT SSO1964 1779283 - 1779681 + | transposon ISC1913 Orf1 SSO1966 1780665 - 1779715 - | transposase ISC1190 TERM 674 1780778 - 1780810 + H 71 -7.8 -3.52162 | overlap 1780774 1780781 TCAACGGCCTACACC CCAGTCAGATCTGT ATTAC ACAGATCTGACTAA TATGTTTTATATAAG TERM 675 1780781 - 1780807 + H 100 -13.9 -2.88375 | overlap 1780778 1780774 ACGGCCTACACCCCA GTCAGATCTGT ATTAC ACAGATCTGAC TAATATGTTTTATAT SSO9368 1780812 - 1781108 + | second ORF in transposon ISC1913 SSO1967 1781080 - 1782312 + | third ORF in transposon ISC1913 SSO1968 1782846 - 1782460 - | hypothetical protein SSO9378 1783108 - 1782833 - | hypothetical protein SSO1969 1783693 - 1784091 + | hypothetical protein TERM 676 1784430 - 1784415 - f 84 -6.2 -5.24129 | CTCTCTGAGAAAAAA TTGTAG TAAC CTACAA AGTATAAATATACGA SSO1970 1784694 - 1785086 + | hypothetical protein TERM 677 1785144 - 1785118 - f 83 -11 -2.88375 | overlap 1785113 1785115 ATATAAAACATATTA GTCAGATCTG AGTAATA CAGATCTGAC TGGGGTGTAGGCCGT SSO1971 1785260 - 1785772 + | transposon ISC1190 Orf1 SSO1972 1785726 - 1786205 + | second ORF in transposon ISC1190 SSO1974 1787457 - 1786309 - | hypothetical protein SSO1975 1788111 - 1787734 - | hypothetical protein TERM 678 1787979 - 1787956 - G 71 -4.6 -4.86033 | opp_overlap 1787956 AAATGCTGACAAAAA GTCGAGGA TTTTATTT TCCTCAAC TTTGCCGAGTAATAC TERM 679 1788562 - 1788548 - R 83 -5.8 -5.2189 | opp_overlap 1788547 TTAAGGAGGAAAAAA TGAAAA AGA TTTTCA ACTACTTTTCTCCAC SSO1976 1788904 - 1788560 - | hypothetical protein TERM 680 1788697 - 1788715 + g 81 -9.6 -3.65522 | TATCAACCATTCTCT GTAAGGCT TGT AGCCTTGC TTGTTCCGCTAACTC SSO1977 1789606 - 1789208 - | hypothetical protein SSO1978 1789959 - 1790714 + | transposon ISC1225 Orf1 SSO1980 1791979 - 1790735 - | transposase ISC1332 TERM 681 1791945 - 1791962 + g 81 -5.5 -5.2197 | overlap 1791948 CTCTCCCTTATGGTA TTACCCC TTCC GGGGTTA TTTTTACTTTTTGTC TERM 682 1791948 - 1791959 + g 81 -7.2 -4.64346 | overlap 1791945 TCCCTTATGGTATTA CCCC TTCC GGGG TTATTTTTACTTTTT SSO9407 1792068 - 1792358 + | partial transposase in ISC1225 TERM 683 1793682 - 1793655 - g 73 -9.8 -2.50816 | opp_overlap 1793655 1793654, overlap 1793654 CGTTGATTCAGTAAG GCCAGGCGTC CCAATACT GACGCCAGGC ATTATTGAGCTAATT TERM 684 1793655 - 1793682 + G 75 -9.8 -2.79557 | opp_overlap 1793654 1793655, overlap 1793654 CGTTGATTCAGTAAG GCCAGGCGTC CCAATACT GACGCCAGGC ATTATTGAGCTAATT SSO1981 1792375 - 1794081 + | hypothetical protein SSO1983 1794085 - 1796007 + | hypothetical protein TERM 685 1796766 - 1796749 - g 74 -4.8 -4.77173 | gap 1, opp_overlap 1796749 1796750, overlap 1796750 TGCGGATAAAATAAA CCCAGCG GACAT CGC-GGG ATTTTTCACATACTG SSO1984 1796525 - 1796974 + | hypothetical protein SSO1985 1797643 - 1797062 - | hypothetical protein TERM 686 1798269 - 1798259 - H 70 -4 -5.03945 | TAATAACGAGAAAAA TATC GTG GATA AAAGCGCGTAAGAAC SSO1986 1798337 - 1798930 + | hypothetical protein SSO1987 1798944 - 1799870 + | hypothetical protein SSO1988 1799863 - 1800333 + | hypothetical protein SSO1989 1800334 - 1801737 + | hypothetical protein TERM 687 1801761 - 1801746 - g 76 -6.2 -4.68645 | opp_overlap 1801746, overlap 1801741 GATTTAAAATGAAAA TGAGTA TAAG TACTCA TTTACCAAGAATTTT SSO1990 1801739 - 1802593 + | hypothetical protein TERM 688 1803519 - 1803549 + G 77 -9.8 -3.14211 | opp_overlap 1803520 GCCCTATCCGATAAT ACCTGGTAGGATTA CGT TAATCTTACCGGGG TTAATAAGGGAAGGT TERM 689 1803548 - 1803520 - g 71 -8.9 -3.23393 | opp_overlap 1803519 CCCTATCCGATAATA CCTGGTAGGATTA CGT TAATCTTACCGGG GTTAATAAGGGAAGG TERM 690 1805590 - 1805580 - g 72 -4 -4.96501 | TTGGATAAAAAGAAA TTCT CTT AGAA AACACGTTGAGTTTA SSO1991 1802590 - 1805727 + | hypothetical protein SSO1992 1805724 - 1806668 + | hypothetical protein SSO1993 1807262 - 1806774 - | hypothetical protein SSO1994 1808365 - 1807379 - | hypothetical protein TERM 691 1807519 - 1807539 + g 71 -4.7 -4.58395 | overlap 1807520 GGGAGTTCTCTATTT CGTCGATAA TGA TTGTCGACA TTTTTAACAGATACA TERM 692 1807520 - 1807538 + g 70 -8.2 -3.34716 | overlap 1807519 GGAGTTCTCTATTTC GTCGATAA TGA TTGTCGAC ATTTTTAACAGATAC TERM 693 1808536 - 1808512 - H 71 -8.5 -2.79796 | TTGGACTTCACCAGA GTCACGGGGAC ATT GTCCCCTTCAC ACCCCTCCGCCCCTT TERM 694 1809492 - 1809474 - g 82 -11 -3.32514 | opp_overlap 1809474, overlap 1809469 TATACAATAAGGTAA GAGGTCCC ATA GAGACCTC TTATAGGAACATTAA TERM 695 1809474 - 1809492 + G 73 -8.8 -3.30159 | opp_overlap 1809474 1809469 TATACAATAAGGTAA GAGGTCCC ATA GAGACCTC TTATAGGAACATTAA SSO1995 1808762 - 1809634 + | transposon ISC1225 Orf1 TERM 696 1811437 - 1811451 + F 82 -8.6 -4.04188 | GCGGTTGTTTTCCAG TTCCAG AAA CTGGAA TTCTTATCTTTCAAT TERM 697 1811657 - 1811639 - f 81 -3.2 -5.77856 | opp_overlap 1811639, overlap 1811626 AAGAAAGTAAAAAAA TTGAAATT TTA ACTTTCAA TTCTATAGTAGATTA SSO1996 1815581 - 1815970 + | hypothetical protein SSO1997 1815967 - 1816932 + | hypothetical protein TERM 698 1817291 - 1817305 + GF 76 -8.6 -3.47573 | GTAAAGTGTATATGC CTAACG GTA CGTTAG TTGTCGTCTACGTAA SSO1998 1816948 - 1817670 + | hypothetical protein SSO1999 1817612 - 1819159 + | ATP-dependent RNA helicase-like protein SSO2001 1819156 - 1819875 + | hypothetical protein TERM 699 1820612 - 1820599 - g 73 -6.7 -4.35483 | CCCCACCACAATAAA TGGAG GCTT CTCCA TAGACTTGACTAAAT SSO2002 1819856 - 1820893 + | hypothetical protein SSO2004 1820893 - 1821762 + | hypothetical protein SSO2005 1822300 - 1821974 - | hypothetical protein SSO2006 1822318 - 1822791 + | transposon ISC1048 Orf1 SSO2007 1822754 - 1823143 + | second ORF in transposon ISC1048 huyA-2 1823352 - 1825286 + | N-methyl hydantoinase A (huyA-2) hyuB-2 1825283 - 1826815 + | N-methyl hydantoinase B (hyuB-2) TERM 700 1826807 - 1826828 + F 83 -5.9 -5.29385 | opp_overlap 1826809 GGAGGATATGGAAGC GAGAAATAG TGAT CTATTACTC TTTTTTCATTCAATT SSO2012 1827013 - 1827495 + | hypothetical protein SSO2013 1827452 - 1827823 + | hypothetical protein TERM 701 1829011 - 1829023 + G 77 -2.7 -5.47159 | opp_overlap 1828976, overlap 1828974 TCCATTACAAGGAAT TGGAA TAC TTTCA TTTTTTGTATTAACA SSO2014 1828145 - 1829068 + | hypothetical protein SSO9500 1830100 - 1830342 + | hypothetical protein SSO2015 1831514 - 1830357 - | protease, putative paaF-4 1832441 - 1831629 - | enoyl CoA hydratase (paaF-4) TERM 702 1831682 - 1831705 + g 73 -9.6 -2.82955 | overlap 1831681 ACGCCCTAGCTCCCT CCTTAGCGTC TTCT GACGCTAACG CTTGGTTTTGCATTT SSO2018 1833212 - 1832442 - | ring oxydation complex/ phenylacetic acid degradation related protein SSO2019 1833314 - 1834018 + | ring oxydation complex/ phenylacetic acid degradation related protein acsA-4 1834088 - 1834954 + | Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment (acsA-4) acsA-4 1834879 - 1835682 + | Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment (acsA-4) SSO2022 1835795 - 1836595 + | ring oxydation complex/ phenylacetic acid degradation related protein SSO2023 1836633 - 1837319 + | hypothetical protein SSO2024 1837866 - 1838174 + | hypothetical protein TERM 703 1839270 - 1839219 - g 78 -8.9 -3.72742 | GTATTAGGAAGACAA TTATTAGCCGATCCCTATTGGCT AGAGAA AGCTAAAAGGGATCTACCAATAA GACCATGTATTAGGT SSO2025 1838292 - 1839959 + | NADH oxidase TERM 704 1840049 - 1840064 + T 80 -5.4 -5.14626 | opp_overlap 1840049, overlap 1840051 AACTTATGAAGAATA TGGTCG GAAA CGACTA TTTTATTTTGCTAAT ssh7A 1840364 - 1840170 - | 7 KD DNA-binding protein (SSO7D) (SSH7A) (ssh7A /Sso7d-3) TERM 705 1840707 - 1840718 + H 71 -3 -5.23765 | GGAGTGTTAACTCTA GAAT TGTC ATTC TTTTTATCTTCTTTC SSO2026 1841137 - 1841667 + | hypothetical protein SSO2027 1842330 - 1841761 - | hypothetical protein SSO2028 1842409 - 1843047 + | 2-haloalkanoic acid dehalogenase TERM 706 1843393 - 1843410 + G 74 -8.5 -3.82378 | GAGTAGGATTTTGGG GGAGAAT GTTC ATTCTCC TTATTGTAGCTGCCT TERM 707 1843447 - 1843437 - g 76 -6.8 -4.42386 | GCCTTAGTTAGAAAA CCAG GTA CTGG GATACTGAGTTTACT SSO2029 1843119 - 1843757 + | hypothetical protein SSO2030 1843882 - 1845474 + | ABC transporter SSO2031 1845458 - 1846423 + | hypothetical protein SSO2032 1847458 - 1846928 - | hypothetical protein SSO2033 1847556 - 1848455 + | transposase ISC1058 SSO2035 1849708 - 1848518 - | hypothetical protein SSO2036 1849776 - 1850858 + | ATP-dependent RNA helicase SSO2037 1850848 - 1852560 + | thermopsin precursor, SSO2038 1853435 - 1852563 - | hypothetical protein SSO2039 1853782 - 1855065 + | metabolite transport protein pepQ-like2 1855075 - 1856301 + | Prolidase (Xaa-Pro dipeptidase) (pepQ-like2) TERM 708 1856742 - 1856712 - g 70 -2.9 -5.10154 | gap 2, overlap 1856706 1856716 ATGTAAAACCAAAAA TTATC-TTTTG-TCA AGA TGACCAAAAGGATAA GATAAATGATGCAAT acsA-5 1856348 - 1857844 + | Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-5) SSO2042 1859327 - 1857849 - | allantoin permease TERM 709 1859009 - 1859027 + g 79 -7.4 -4.46155 | overlap 1859010 TTGGTCTAATTGATG AGGGGAAT GGA ATTCCCCA TTTTGTACCTATATG TERM 710 1859010 - 1859026 + g 80 -10.9 -3.2697 | overlap 1859009 TGGTCTAATTGATGA GGGGAAT GGA ATTCCCC ATTTTGTACCTATAT SSO2043 1859723 - 1861573 + | amino acid transporter-like protein gdhA-4 1861881 - 1863143 + | NAD specific glutamate dehydrogenase (gdhA-4) TERM 711 1863723 - 1863735 + G 71 -4.9 -4.57353 | TTTCCTCTAAGTGGG CAATA TTA TATTG TTTTCTATAATAACA SSO2045 1863429 - 1866056 + | protease SSO2046 1866721 - 1866419 - | hypothetical protein SSO2047 1868258 - 1866840 - | multidrug resistance protein TERM 712 1868500 - 1868514 + H 72 -9.2 -2.67803 | GTGGAGGGGTATGAG TGGGGC AAT GCCCCG TGACTTTGGTGAGGC SSO2048 1869367 - 1869717 + | hypothetical protein SSO2050 1870242 - 1869727 - | hypothetical protein SSO2049 1870209 - 1870694 + | hypothetical protein SSO2052 1871598 - 1870810 - | hypothetical protein TERM 713 1871638 - 1871615 - R 91 -5.4 -5.7827 | AATATAAATAAAAAA TTAAGTTAAC TTTT GTTCACTTAA GCTTTAGGATTAGGC hpaA 1873161 - 1871635 - | 4-hydroxyphenylacetate-3-hydroxylase (hpaA) SSO2054 1874057 - 1873107 - | catechol 2,3-dioxygenase (metapyrocatechase) SSO2055 1874577 - 1874110 - | hypothetical protein SSO2057 1876111 - 1874633 - | sugar transport related protein SSO2058 1876243 - 1876875 + | hypothetical protein acsA-6 1878735 - 1876867 - | Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-6) TERM 714 1878658 - 1878672 + g 70 -8.6 -3.10597 | opp_overlap 1878647, overlap 1878647 1878657 ATTAGCCTTATCCCG CCAGAA GGC TTCTGG ATTTTCCATGGAGAA acd-3 1878836 - 1879951 + | Acyl-CoA dehydrogenase (acd-3) TERM 715 1881108 - 1881124 + G 75 -9.4 -3.18912 | TGTAGTCGCGTCTTG GCGTGG AATTC CCACGC TTACTGGATCAGTCG acaB-2 1880014 - 1881159 + | acetyl-CoA acetyltransferase acaB-3 1881105 - 1882334 + | acetyl-CoA acetyltransferase SSO2063 1882345 - 1882842 + | hypothetical protein SSO2064 1882843 - 1883277 + | hypothetical protein SSO2066 1884178 - 1883264 - | hypothetical protein iorA 1884322 - 1886160 + | indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) iorB 1886148 - 1886732 + | indolepyruvate oxidoreductase subunit B acsA-7 1886722 - 1888548 + | Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-7) bcp-1 1889006 - 1888545 - | peroxiredoxin SSO2072 1890490 - 1889747 - | hypothetical protein TERM 716 1889943 - 1889920 - G 73 -9.7 -2.51547 | opp_overlap 1889924 1889927 1889930, overlap 1889919 1889917 1889922 1889931 CGCTTATACCAATAC CACATACTG AACCAG CAGTATGTG CTGGATAAATTTCAA SSO2073 1891193 - 1890522 - | hypothetical protein SSO2074 1891234 - 1892334 + | transport protein, putative TERM 717 1892312 - 1892328 + T 71 -8.1 -3.23492 | TGCAAGTTGTAGCTC TCTTACT AGT AGTAAGA TCTTAATCTCTCATA SSO2076 1892882 - 1892523 - | hypothetical protein SSO2077 1893897 - 1892833 - | transposase ISC1217 TERM 718 1893011 - 1892993 - GR 74 -9.6 -2.50994 | overlap 1892992 1893010 TTCAAGGCCACGAAG CCTGAGTT CCT AACCCAGG TCAAGAAGGACCCAC SSO2078 1894848 - 1893970 - | hypothetical protein SSO2079 1895173 - 1895739 + | DNA protection protein DPS arf 1895792 - 1896118 + | Rieske-type ferredoxin (aRF) SSO2081 1896651 - 1896115 - | hypothetical protein SSO2083 1897190 - 1896687 - | hypothetical protein SSO2085 1898183 - 1897233 - | hypothetical protein SSO2086 1899351 - 1898386 - | transposase ISC1439 clcD 1900520 - 1899747 - | carboxymethylenebutenolidase, putative (clcD) TERM 719 1900116 - 1900133 + g 73 -9.9 -2.50291 | overlap 1900115 TTTAACACCTTGTGA GCTTACG TACT CGTAAGC CTTAATAGCGTCCTT TERM 720 1900597 - 1900581 - R 81 -3.1 -5.71712 | overlap 1900584 TGTTAGATAAAAAAA TAATTAA CTT TCAATTA AGCCAGAATATAGCA SSO2088 1902404 - 1900584 - | peptidase, putative SSO2089 1903080 - 1902460 - | hypothetical protein TERM 721 1903466 - 1903447 - g 76 -9.3 -3.30969 | ACCCACGAAACTGAA GGACGAG GAAAAG CTCGTCC GAATCTTAGAAAAGA SSO2090 1903244 - 1904257 + | transposase ISC1078 cutA-2 1904282 - 1906378 + | carbon monoxide dehydrogenase, large chain (cutA-2) SSO2092 1906371 - 1906922 + | hypothetical protein treZ 1906943 - 1908628 + | maltooligosyltrehalose trehalohydrolase TreZ treX 1908797 - 1910953 + | glycogen debranching protein TreX TERM 722 1912966 - 1912936 - g 81 -9 -4.04209 | overlap 1912939 1912959 CTAAACGATTATAAA CCATTACCCTTTGG CTT CCAAAGGGGAAAAG TAACTGTCCTTTTCT TERM 723 1912963 - 1912939 - g 83 -11.5 -3.05238 | overlap 1912936 1912959 AACGATTATAAACCA TTACCCTTTGG CTT CCAAAGGGGAA AAGTAACTGTCCTTT treY 1910950 - 1913148 + | maltooligosyltrehalose synthase (treY) TERM 724 1913771 - 1913794 + F 84 -11 -2.98823 | opp_overlap 1913760 1913774 CCCACACCCGTGAAC GGATGTGAGG AAAT CCGCACATCC TGTATCTCAACACCA TERM 725 1913921 - 1913909 - f 73 -7.7 -3.60098 | opp_overlap 1913909 1913911 ACGGTTTATCGGAAA CCGTT GGC AACGG TGAATTTTCCGCCGC TERM 726 1914198 - 1914181 - f 74 -4.1 -5.14965 | overlap 1914182 1914191 ACTGTCAGTAAAAAA GTCAAGG AAGT CCTTGAG AGGAAGAAGAAGGAA TERM 727 1914197 - 1914182 - f 73 -7.6 -3.68256 | overlap 1914181 1914191 CTGTCAGTAAAAAAG TCAAGG AAGT CCTTGA GAGGAAGAAGAAGGA SSO2096 1914354 - 1914725 + | hypothetical protein tri 1918680 - 1915474 - | Tricorn protease (tri) TERM 728 1917643 - 1917672 + gF 78 -6.6 -4.52101 | opp_overlap 1917642 ACCATTTACAACAGC TTCGTTCATGTA CTCCAT TACATTAACGAA TTTTGGTTGCTTCTT ribD 1918567 - 1919208 + | hypothetical protein SSO2099 1920786 - 1921745 + | transposase ISC1234 SSO2100 1922232 - 1921900 - | hypothetical protein SSO2101 1923408 - 1922326 - | hypothetical protein TERM 729 1923400 - 1923443 + g 100 -14.2 -4.02571 | gap 1, opp_overlap 1923400 1923410, overlap 1923407 1923408 1923410 TCTACCGAATATGAA TTTGACCATACGGTACCGATA TTA TATCGGTACCGTA-GTTTAAA TTATTTACTGCGTTC TERM 730 1923443 - 1923400 - G 89 -12 -3.38072 | gap 1, opp_overlap 1923400 1923407 1923408 1923410, overlap 1923410 TCTACCGAATATGAA TTTGACCATACGGTACCGATA TTA TATCGGTACCGTA-GTTTAAA TTATTTACTGCGTTC TERM 731 1923407 - 1923437 + g 100 -15.6 -3.90038 | opp_overlap 1923400 1923410, overlap 1923400 1923408 1923410 AATATGAATTTGACC ATACGGTACCGATA TTA TATCGGTACCGTAG TTTAAATTATTTACT TERM 732 1923408 - 1923436 + H 100 -19.1 -2.92938 | opp_overlap 1923400 1923410, overlap 1923407 1923400 1923410 ATATGAATTTGACCA TACGGTACCGATA TTA TATCGGTACCGTA GTTTAAATTATTTAC TERM 733 1923434 - 1923410 - H 100 -17.3 -2.81173 | opp_overlap 1923408 1923407 1923400 1923410, overlap 1923400 ATGAATTTGACCATA CGGTACCGATA TTA TATCGGTACCG TAGTTTAAATTATTT TERM 734 1923410 - 1923434 + H 100 -17.3 -3.00451 | opp_overlap 1923410 1923400, overlap 1923408 1923407 1923400 ATGAATTTGACCATA CGGTACCGATA TTA TATCGGTACCG TAGTTTAAATTATTT SSO2102 1924213 - 1924776 + | hypothetical protein SSO2103 1925542 - 1925880 + | partial transposase in ISC1225 TERM 735 1926074 - 1926064 - gf 70 -2.6 -5.10029 | opp_overlap 1926064, overlap 1926054 ACTAATTTCAAAAAA TATT GAA AATA TATCTGAGATAGAGA SSO2104 1925822 - 1926151 + | Fourth ORF in transposon ISC1225 TERM 736 1927200 - 1927246 + F 74 -7.9 -3.93556 | ATACCCCTTATTTTC CTCCCCATGCCGTCTACGGGA CTAAC TCCCTTCAAGGACATGGGGAG TTTCATTGGGTGCCT SSO2105 1927493 - 1928602 + | hypothetical protein SSO2106 1928589 - 1928987 + | hypothetical protein SSO2107 1928975 - 1929295 + | hypothetical protein TERM 737 1929609 - 1929597 - T 72 -4.9 -4.90869 | opp_overlap 1929584, overlap 1929580 AGTAGTAATTAAAAA TAACT ATT AGTTA CGATGAAAGCCGAAC SSO2108 1930384 - 1930061 - | hypothetical protein SSO2109 1931081 - 1931446 + | hypothetical protein SSO2110 1933070 - 1931907 - | hypothetical protein TERM 738 1933758 - 1933744 - R 88 -11.4 -3.26471 | opp_overlap 1933744 GGAGCTCCACACTAA GGGTCG TTC CGACCC CGAACGAAACTCATT TERM 739 1933968 - 1933953 - R 73 -8.2 -3.48924 | CCATCCCTCACAGAA GGGGAC TTTC GCCCCC TTAACCCCCGTTAAG TERM 740 1934023 - 1933997 - R 90 -12.5 -2.88375 | overlap 1933994 AGATAAAACATATTA GTCAGATCTAT GCGAT ATAGATCTGAC TGGGGTTGAGACCGT SSO2111 1935950 - 1934808 - | hypothetical protein TERM 741 1935750 - 1935740 - G 75 -5.4 -4.76075 | ATGAGAGTAATAAAA CACT TCT AGTG GTGAACTTGGCTGAT TERM 742 1936596 - 1936580 - g 78 -9.5 -3.64609 | TAGAAGGATTCCAAA CCAAGTT ATT AACTTGG ATGATCGTATCGTGA SSO2112 1936374 - 1937183 + | hypothetical protein SSO2113 1938825 - 1937245 - | metabolite permease, putative SSO2114 1939457 - 1939146 - | hypothetical protein SSO2115 1940055 - 1939450 - | hypothetical protein SSO2116 1940829 - 1940056 - | cobalt transport ATP-binding protein (cbiO-2) homolog, putative SSO2117 1940928 - 1941752 + | hypothetical protein SSO2118 1942936 - 1941983 - | hypothetical protein TERM 743 1942196 - 1942177 - G 86 -9.4 -4.21194 | opp_overlap 1942177 TTGTAGCAGTTAAAA TTCCCAAT TGAA ATTGGGAA TATATAGTAGCTTCA TERM 744 1942177 - 1942196 + g 74 -9.4 -2.9627 | opp_overlap 1942177 TTGTAGCAGTTAAAA TTCCCAAT TGAA ATTGGGAA TATATAGTAGCTTCA SSO2119 1943718 - 1942987 - | hypothetical protein SSO2120 1944279 - 1945244 + | transposase ISC1439 TERM 745 1946217 - 1946198 - g 74 -7.8 -3.91032 | overlap 1946212 CAATTAGTTGACAAA GCAGGAGT AGTA ACTCCAGC TAACTGGCCTAATAA bcp-2 1945703 - 1946350 + | putative peroxiredoxin gatA-3 1947886 - 1946372 - | amidase TERM 746 1947946 - 1947930 - H 90 -9.5 -4.19879 | opp_overlap 1947929 1947933 1947945, overlap 1947933 ACAAAAGTTTTAAAA GAAGCAT TAC ATGCTTC GTATCTAACAGATCT SSO2123 1948091 - 1948954 + | transposon ISC1316 Orf1 SSO2124 1948939 - 1949301 + | second ORF in transposon ISC1316 SSO2125 1950201 - 1950713 + | hypothetical protein TERM 747 1952823 - 1952838 + G 74 -8.2 -3.66356 | opp_overlap 1952813 1952823 TAATACGTCGACCAA CGCCCT TTTT GGGGCG TTTCAAGTTACAACT SSO2126 1951498 - 1953090 + | L-lactate permease SSO2127 1953502 - 1954794 + | transport protein, permease porD-like 1955003 - 1956094 + | pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like) porA-like 1956091 - 1957338 + | pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-like) porB-like 1957357 - 1958373 + | pyruvate synthase beta chain (Pyruvic-ferredoxin oxidoreductase beta chain) (porB-like) TERM 748 1958375 - 1958389 + T 74 -2.9 -5.38348 | opp_overlap 1958375 TAAGTGATAAATAAA GAAAA ATATC TTTTC TTTTTTCCTATTTTT SSO2131 1958892 - 1958425 - | Lrp/AsnC family transcriptional regulator SSO2132 1960068 - 1959055 - | transposase ISC1078 TERM 749 1959846 - 1959865 + g 76 -9.3 -3.30969 | TCTTTTCTAAGATTC GGACGAG CTTTTC CTCGTCC TTCAGTTTCGTGGGT glpK-2 1960696 - 1962195 + | glycerol kinase (glpK-2) SSO2134 1963968 - 1962697 - | sugar transport related protein TERM 750 1963262 - 1963252 - G 76 -3.2 -5.28942 | GACGTCAAATAAAAA CCAG ACA CTAG TTACAAAAAATGTAA TERM 751 1963522 - 1963492 - G 79 -4.8 -5.11063 | overlap 1963494 AGTAGGTAATAAAAA TAGCGTCGCAAT CCCTGAT ATTGCAACACCA ACCCAATACATAGCT SSO2135 1964894 - 1964022 - | hypothetical protein SSO2137 1965910 - 1964891 - | ABC transporter, ATP binding protein. SSO2138 1966292 - 1965885 - | hypothetical protein TERM 752 1966386 - 1966412 + H 71 -5.4 -4.71584 | opp_overlap 1966386 1966382 1966392, overlap 1966379 TGTCCTAACAATAAT TTAAAATATATT ATA AATATATTATAA TTTATTATTTCTTTA TERM 753 1967049 - 1967023 - g 100 -13.8 -2.7676 | opp_overlap 1967021 1967035, overlap 1967020 TAAACTTTAATAGTA TGGGTACCCATA TTT CACGGGTACCCA TGAAATTCATCTTCG SSO2139 1967022 - 1968209 + | hypothetical protein SSO2140 1968238 - 1968660 + | hypothetical protein apeH-2 1970377 - 1968668 - | acylaminoacyl-peptidase SSO2142 1971041 - 1970712 - | hypothetical protein TERM 754 1970839 - 1970851 + g 71 -4.9 -4.71382 | AATTTTTCATCGCAG TAGAA AAG TTCTA TTTTTAAGTCCTTAT TERM 755 1970934 - 1970967 + g 81 -4 -5.48213 | gap 1, overlap 1970936 AAATATGTTAGTTTT TGCCCT-TAAGAAGT CTTCA ACTTCTTTTAGGGTA TTTTTATTTTCCATA SSO2143 1971818 - 1971177 - | second ORF in transposon ISC1316 SSO2144 1972302 - 1971907 - | transposon ISC1316 Orf1 SSO2145 1972729 - 1973694 + | transposase ISC1439 SSO2146 1974141 - 1974575 + | hypothetical protein SSO2148 1974673 - 1975056 + | hypothetical protein cutA-3 1975089 - 1977278 + | carbon monoxide dehydrogenase, large chain (cutA-3) SSO2151 1977528 - 1977869 + | hypothetical protein SSO2152 1978630 - 1978217 - | hypothetical protein TERM 756 1979586 - 1979604 + G 71 -9.6 -2.50994 | overlap 1979574 1979585 GTGGGTCCTTCTTGA CCTGGGTT AGG AACTCAGG CTTCGTGGCCTTGAA SSO2153 1978700 - 1979764 + | transposase ISC1217 TERM 757 1981512 - 1981537 + G 74 -9.9 -2.75481 | opp_overlap 1981526 TCCAATAATGGCTGA TTGGATAACTA AACC TGGTTATCCAA TGGTTAGAGTTAGCG SSO2154 1980262 - 1982619 + | Tricorn protease interacting factor F2 SSO2155 1982669 - 1983019 + | hypothetical protein SSO2156 1983028 - 1983879 + | endonuclease IV-like protein SSO2157 1983860 - 1984561 + | hypothetical protein SSO2158 1984906 - 1984523 - | hypothetical protein SSO2159 1985769 - 1985101 - | 2-haloalkanoic acid dehalogenase SSO2160 1986086 - 1985781 - | hypothetical protein rfbD-3 1986828 - 1986061 - | dTDP-4-dehydrorhamnose reductase (rfbD-3) SSO2162 1989909 - 1986907 - | dehydrogenase, putative SSO2163 1990365 - 1989946 - | histidine triad (Hit) family protein, putative SSO2164 1990903 - 1990523 - | hypothetical protein SSO2165 1991295 - 1990873 - | hypothetical protein SSO2166 1992148 - 1992753 + | hypothetical protein SSO2167 1992750 - 1993250 + | hypothetical protein SSO2169 1994308 - 1993637 - | hypothetical protein SSO2170 1995482 - 1994295 - | hypothetical protein SSO2171 1995866 - 1996393 + | putative NTPase TERM 758 1997233 - 1997206 - g 70 -3.5 -5.04385 | overlap 1997226 GATATTGTTAAAAAA GTTGATAGACT AGTTAA AATCTCTCAAC ACAAGAGGCTACCCC nadE 1996402 - 1997316 + | NH(3+) dependent NAD(+) synthetase (nadE) SSO2174 1997307 - 1998119 + | amidohydrolase, putative SSO9953 1998652 - 1998921 + | transcription regulator, putative SSO2175 1998933 - 1999832 + | hypothetical protein SSO2176 2000383 - 1999829 - | hypothetical protein SSO2177 2000418 - 2001149 + | SAM-dependent methyltransferase, putative asd-2 2001586 - 2002656 + | aspartate-semialdehyde dehydrogenase SSO2179 2002689 - 2003486 + | hypothetical protein SSO2181 2007092 - 2003859 - | peptidase related protein TERM 759 2005721 - 2005708 - G 78 -5.3 -4.99645 | opp_overlap 2005708 AGCTCATAAAGAAAA GGATT TACA AATCC TAGCTTACCGTAGCT TERM 760 2007197 - 2007218 + H 78 -6.7 -4.4078 | GATCACGCGAAAATG GTTTTTAAG GAAG CTTGAAAAC TTTTAATTAGAGAAC idh 2007306 - 2008547 + | isocitrate dehydrogenase TERM 761 2009169 - 2009185 + G 81 -8.7 -4.1648 | CTTTCTAATTGAGTA CTTGCCT ACA GGGCAAG TTATTTCATTGTTCT SSO2183 2009008 - 2009310 + | hypothetical protein cdc6-3 2009385 - 2010569 + | cell division control 6/orc1-like protein SSO2186 2010928 - 2011773 + | hypothetical protein SSO2187 2011770 - 2012114 + | pterin-4-alpha-carbinolamine dehydratase, putative SSO2188 2012690 - 2012181 - | hypothetical protein SSO2190 2013399 - 2012683 - | hypothetical protein SSO2191 2014236 - 2013433 - | hypothetical protein TERM 762 2014566 - 2014579 + r 70 -3.9 -5.10077 | overlap 2014565 TCTTAGAAAAATCTC TATAC TATA GTATA TTTTTTACAATATTT TERM 763 2014860 - 2014827 - R 72 -8.9 -2.68823 | gap 1, opp_overlap 2014856, overlap 2014826 2014829 GTTTGCTCAGAGAAG CAGGGAATCCTCATCC TGA AG-TGAGGATGCCCCG TCGTGAGGACGTGGT SSO2192 2015987 - 2015157 - | hypothetical protein SSO2193 2016629 - 2016255 - | hypothetical protein SSO2194 2016662 - 2017993 + | thermopsine precursor related protein SSO2195 2018018 - 2018821 + | erythrocyte band 7 membrane protein TERM 764 2018814 - 2018800 - T 88 -7.2 -5.01732 | AACTCTCTCAAAAAA GTTTCA AAC TGAAAC CAAGTAATCAGCTGG SSO2197 2019943 - 2018852 - | hypothetical protein SSO2199 2023653 - 2020615 - | hypothetical protein SSO2200 2025271 - 2023658 - | hypothetical protein SSO2201 2025884 - 2025294 - | hypothetical protein SSO2202 2026740 - 2025868 - | hypothetical protein SSO2203 2026797 - 2027651 + | hypothetical protein SSO2204 2027648 - 2029624 + | hypothetical protein fabG 2029637 - 2030356 + | 3-ketoacyl-(acyl-carrier-protein) reductase tenA-1 2030357 - 2030998 + | transcriptional activator (tenA-1) TERM 765 2031517 - 2031527 + G 90 -4 -5.79595 | TTATCTAACACTTAT GAAT CGG ATTC TTTTTTATTTTCGAG SSO2207 2030995 - 2031663 + | hypothetical protein SSO2208 2032370 - 2031660 - | hypothetical protein TERM 766 2033215 - 2033234 + G 74 -5 -4.83759 | CTAGAGGAGCAAGGG CGTATTTG GTAG CAGGTACG TTTTTCGCTTTAATT SSO2209 2032422 - 2033480 + | hypothetical protein SSO2210 2033604 - 2034167 + | hypothetical protein SSO2211 2034192 - 2035244 + | hypothetical protein SSO2212 2035195 - 2035965 + | hypothetical protein SSO2213 2037138 - 2036095 - | hypothetical protein TERM 767 2036412 - 2036429 + g 72 -7.7 -3.6682 | opp_overlap 2036412 CGAATTCATTAACTA TGGCAGC AGCA GCTGTCA TTTGAGTCCCTCCAG SSO2214 2037178 - 2037543 + | hypothetical protein nifS 2038666 - 2037536 - | NifS protein homolog (nifS) acsA-8 2040353 - 2038638 - | Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-8) TERM 768 2040300 - 2040314 + gr 71 -4.2 -4.82901 | ATTAGCAAACGTTTC CCAGTA GGT TTCTGG TTTTTCTAAGGAAAG SSO2218 2040887 - 2040411 - | hypothetical protein SSO2219 2041620 - 2040871 - | hypothetical protein TERM 769 2042041 - 2042057 + G 83 -8.7 -4.32201 | overlap 2042043 TGCTTCAATGTTCTT TTCCACC GGA GGTGGGA TTTTAGCTTCATTGA SSO2220 2041721 - 2042788 + | hypothetical protein SSO2221 2043119 - 2042766 - | hypothetical protein trxB-1 2043206 - 2044204 + | thioredoxin reductase (trxB-1) SSO2224 2045375 - 2044890 - | hypothetical protein SSO2223 2044137 - 2044967 + | hypothetical protein SSO10051 2045628 - 2045359 - | hypothetical protein SSO2225 2045902 - 2045582 - | hypothetical protein SSO2226 2045924 - 2046595 + | ribosome biogenesis protein SSO2227 2047151 - 2046576 - | hypothetical protein TERM 770 2047458 - 2047440 - H 73 -7.6 -3.64371 | opp_overlap 2047439 AATTTATATGCGAAA GTTTATTT ATA AAATAAAC CATATTTACTAGGGA SSO2228 2047756 - 2048640 + | hypothetical protein SSO2229 2049474 - 2048608 - | hypothetical protein SSO2230 2049579 - 2050109 + | hypothetical protein SSO2231 2050752 - 2050090 - | hypothetical protein trxA-2 2051163 - 2050756 - | thioredoxin (trxA-2) SSO2233 2051220 - 2052134 + | hypothetical protein SSO2234 2052124 - 2052840 + | hypothetical protein SSO2236 2053461 - 2052811 - | phosphoglycerate mutase, putative SSO2237 2053505 - 2054482 + | hypothetical protein SSO2238 2054626 - 2054952 + | hypothetical protein bps2 2056717 - 2054954 - | BPS2 protein homolog (bps2) TERM 771 2055405 - 2055421 + g 72 -9.5 -2.74523 | overlap 2055401 TCTTTTTCTTTCAAC TCCTCTA GGA TAGAGGA TGGTATTCCCAATAG TERM 772 2056782 - 2056816 + H 71 -5.2 -4.59773 | opp_overlap 2056782 GTTAAGTGTGGACAA CAATTTTCTTAATTTA AAA TAAATTGTGTAAATTG TTTTTGCGCGTGGAA SSO2242 2056841 - 2057269 + | transposon ISC774 Orf1 SSO10075 2057280 - 2057534 + | second ORF in transposon ISC774 TERM 773 2057754 - 2057720 - f 100 -13.6 -3.51124 | overlap 2057718 ACTAAGCATGAAAGA CCTCTACACCCACTCT CCG AGCGAGGATGTAGAGG AGCTCAAGAAGTGGT TERM 774 2057909 - 2057923 + F 79 -7.2 -4.38637 | opp_overlap 2057908 2057909 CTATTTTCTCATAAT TGCAAT ATT ATTGCA TTTTACCTTATTCTT iunH-2 2058349 - 2059272 + | purine nucleosidase, putative (iunH-2) fur 2059656 - 2059246 - | ferric uptake regulation protein (fur) SSO2245 2059760 - 2060224 + | hypothetical protein SSO2246 2060221 - 2060892 + | methyltransferase, putative TERM 775 2060928 - 2060940 + F 79 -4.8 -5.30575 | opp_overlap 2060927 2060928 TTTTTTCCTAACAAC GTGC TTCGC GCAC TTTTTTGAATTTTTA czcD 2061575 - 2062390 + | cation transport protein (czcD) SSO2248 2063406 - 2062387 - | hypothetical protein SSO2249 2065997 - 2063403 - | purine NTPase TERM 776 2066000 - 2066015 + r 84 -6.2 -5.24989 | opp_overlap 2066000 TATCAATTCTCATAA GTTAAC ACCT GTTAAC TTTTTTAATATCTCA rad32/mre11 2067139 - 2065994 - | DNA repair protein (rad32/mre11) SSO2251 2068644 - 2067142 - | hypothetical protein SSO2253 2069294 - 2068737 - | hypothetical protein TERM 777 2070803 - 2070792 - g 80 -5.8 -5.04868 | TTAAATTAAATAAAA CTGG TAAC CCAG GTATGACTGTAGGTG SSO2254 2069543 - 2071048 + | hypothetical protein bcp-3 2071489 - 2071040 - | peroxiredoxin SSO2256 2071570 - 2073105 + | phosphoenolpyruvate carboxylase SSO2257 2073102 - 2073911 + | hypothetical protein SSO2259 2074570 - 2073908 - | hypothetical protein sqr 2075821 - 2074577 - | sulfide-quinone reductase related protein (sqr) SSO2262 2075955 - 2076548 + | hypothetical protein SSO2263 2076545 - 2077186 + | hypothetical protein SSO2265 2078122 - 2077175 - | hypothetical protein mcmA2 2078537 - 2078112 - | methylmalonyl-CoA mutase, alpha-subunit, chain B (mcmA2) SSO2268 2079512 - 2080072 + | hypothetical protein TERM 778 2080121 - 2080104 - T 76 -8.5 -3.39895 | opp_overlap 2080106 TTCTTCACTAATCAA GATGATG TTGG CATCATC ATGTGCCCCGTTCGG SSO2269 2080678 - 2080157 - | hypothetical protein SSO2272 2082034 - 2081153 - | hypothetical protein SSO10122 2082335 - 2082589 + | ORF in partial transposon ISC774 SSO2273 2083261 - 2082845 - | hypothetical protein dapA-1 2083299 - 2084168 + | dihydrodipicolinate synthase (dapA-1) SSO2275 2084231 - 2084881 + | DNA polymerase phage SPO1 N-terminal domain-containing protein fabG-5 2084832 - 2085617 + | 3-oxoacyl-(acyl carrier protein) reductase (fabG-5) SSO2277 2085729 - 2087216 + | hypothetical protein SSO2279 2088791 - 2087490 - | hypothetical protein TERM 779 2087849 - 2087868 + gF 77 -4.4 -5.1861 | gap 1, opp_overlap 2087849 CAACTAATGTGAATA CATTACTGT TCC AC-GTAATG TTTTTTGCTCCTACA SSO2278 2088749 - 2089243 + | MutT-like protein cysS 2090636 - 2089224 - | cysteinyl-tRNA synthetase SSO2281 2091539 - 2090649 - | bifunctional phosphoglucose/phosphomannose isomerase SSO2282 2091969 - 2091532 - | hypothetical protein SSO2283 2092022 - 2093347 + | NADH oxidase SSO2284 2093422 - 2094543 + | hypothetical protein SSO2285 2094540 - 2096369 + | hypothetical protein SSO2286 2096394 - 2096783 + | hypothetical protein SSO2287 2096761 - 2097717 + | acyl-coenzyme a thioester hydrolase SSO2288 2098781 - 2097678 - | hypothetical protein TERM 780 2098519 - 2098501 - G 75 -5.3 -4.88405 | opp_overlap 2098501 2098502, overlap 2098502 AATGCTGAAACAAAA CCGCTTA ACTCG TAAGCGA TTAATTTATTATAAT fabG 2098820 - 2099599 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 781 2100207 - 2100189 - g 73 -6.1 -4.44974 | CCAAATGTTAGAAAA TATAGCT GGTGG AGCTATA TGGGAAATGCTAGAG SSO2290 2099610 - 2100353 + | exodeoxyribonuclease SSO2291 2102009 - 2100345 - | protein kinase, putative SSO2292 2102240 - 2103778 + | amino acid transporter, putative SSO2294 2104255 - 2103749 - | hypothetical protein SSO2295 2104804 - 2104400 - | hypothetical protein cbiE 2105547 - 2104864 - | cobalt-precorrin-6Y C(5)-methyltransferase cbiG-like 2106547 - 2105534 - | cobalamin biosynthesis protein CbiG cbiF 2107314 - 2106526 - | cobalamin biosynthesis precorrin-3 methylase, putative (cbiF) cbiL 2107989 - 2107321 - | cobalt-precorrin-2 C(20)-methyltransferase cbiT 2108585 - 2107986 - | cobalt-precorrin-6Y C(15)-methyltransferase cbiD 2109635 - 2108586 - | cobalt-precorrin-6A synthase TERM 782 2109583 - 2109563 - G 70 -8.2 -3.41013 | opp_overlap 2109569 TAAGTAGACCTATAA CTGCTGCC TTTGC GGCTGCAG AGGCTGCCGCTCCAG cbiH 2110384 - 2109632 - | precorrin-3B C17-methyltransferase cbiC 2111379 - 2110381 - | precorrin-8X methylmutase SSO2309 2113201 - 2112167 - | cofactor biosynthesis protein SSO2310 2113415 - 2114233 + | hypothetical protein TERM 783 2115025 - 2115004 - g 75 -8.8 -3.481 | opp_overlap 2115007, overlap 2115007 CAAGTCAAAGATGAA GAAGGAGT ACACGA ACTCCTTC CTTCACATCTTCCCC SSO2311 2114647 - 2115105 + | hypothetical protein TERM 784 2115249 - 2115223 - f 88 -11.7 -2.88375 | overlap 2115220 ATATAAAACATATTA GTCAGATCTGC GTATT ACAGATCTGAC TGGGGTTGAGGCCGT SSO2312 2115365 - 2116315 + | transposon ISC1190 SSO2314 2116729 - 2116376 - | hypothetical protein FlaJ 2118558 - 2117137 - | flagella-related protein J, putative (FlaJ) TERM 785 2118519 - 2118532 + g 70 -3.1 -5.05782 | GCATGAAAATATATT TGGAG TCTA CTTCA TTTTTTGCACTAAAT FlaI 2120083 - 2118542 - | flagella-related protein I, putative (FlaI) FlaH 2120790 - 2120086 - | flagellar accessory protein FlaH TERM 786 2120361 - 2120371 + g 73 -5.4 -4.55295 | CATCTTTCATGAATT GCAA AAT TTGC TTTATTTCTGCGAAC SSO2319 2121260 - 2120772 - | hypothetical protein TERM 787 2121597 - 2121639 + H 100 -14.3 -3.31589 | GAGGGTTGCGAGATT TTTTGTGAGGGTTACCAGG ATGAA CCTCGTAACCCTCGCACAA TTAATACTTATGATT SSO2320 2121601 - 2122566 + | transposase ISC1173 SSO2322 2123659 - 2122901 - | hypothetical protein TERM 788 2123625 - 2123609 - G 100 -9.5 -4.74518 | opp_overlap 2123608 2123609 2123611 AATCAGTAAAATAAA TAGTGGA GAC TCCACTA GTTGTTGCAATTCAG TERM 789 2123609 - 2123625 + g 73 -9.5 -2.80612 | opp_overlap 2123609, overlap 2123608 2123611 AATCAGTAAAATAAA TAGTGGA GAC TCCACTA GTTGTTGCAATTCAG SSO2323 2124657 - 2123734 - | flagellin, putative SSO2324 2124780 - 2125265 + | hypothetical protein TERM 790 2126113 - 2126123 + G 73 -5.4 -4.70515 | overlap 2126109 TTCCTCTATTCTGGT TTGG AAG CCAA TTTATTTTCAATATC SSO2325 2125249 - 2126718 + | hypothetical protein TERM 791 2127251 - 2127241 - g 72 -4 -5.03227 | opp_overlap 2127241, overlap 2127236 ATACCAGAAATAAAA GATT TAA AATC ATTTCATAAATACGT SSO2326 2127091 - 2127492 + | hypothetical protein TERM 792 2127611 - 2127653 + G 74 -2.9 -5.3104 | gap 1, overlap 2127613 GTATTAAGGGAGCTA GATTCCATTGTAGATTTTGC TAGA GCTAAAT-TACAGTGGGATA TTTTATTTTTCATAA SSO2327 2127575 - 2128387 + | hypothetical protein SSO2328 2128401 - 2128889 + | hypothetical protein SSO10224 2128886 - 2129068 + | hypothetical protein SSO10228 2130106 - 2130258 + | transposon ISC1058 Orf1 SSO2329 2130378 - 2130884 + | second ORF in transposon ISC1058 TERM 793 2131809 - 2131799 - g 70 -5.4 -4.46404 | CAATGAATATGAAAA TGAG AGA CTCA ATACTATATTATCAT SSO2331 2131092 - 2131862 + | hypothetical protein TERM 794 2132867 - 2132851 - g 74 -4.5 -5.02323 | TGATTATAAACAAAA TTCTTAA AGG TCAAGAA AGTAAGTTGGAGGAG SSO2332 2132280 - 2133047 + | hypothetical protein adh-6 2134058 - 2133042 - | zinc-containing alcohol dehydrogenase SSO2337 2134554 - 2134090 - | hypothetical protein SSO2336 2134538 - 2135158 + | hypothetical protein SSO10237 2135271 - 2135543 + | hypothetical protein TERM 795 2135615 - 2135628 + F 71 -3.1 -5.2166 | TTCAAGGAAGGAACG GAGTT AAGA AGCTC TTTTTTGGGTTATTC SSO2338 2136182 - 2137171 + | transport protein, putative SSO2339 2137263 - 2138336 + | peptide chain release factor 1 TERM 796 2138334 - 2138344 + T 77 -4 -5.4593 | AGGTATAGGCTATAT TAGT CAG ACTA TTTTTCTTCTTTTCA gpT-1 2138969 - 2138337 - | purine phosphoribosyltransferase (gpT-1) TERM 797 2138943 - 2138959 + g 72 -3.7 -5.03145 | TATTTCATCCCATGT TACCACT TTC ACTGGTA TTTTTTGCAAAATTA mtaP 2139054 - 2139866 + | 5'-methylthioadenosine phosphorylase II SSO2344 2139827 - 2140612 + | hypothetical protein gdS-2 2140629 - 2141474 + | geranylgeranyl pyrophosphate synthetase, putative (gdS-2) rimK-3 2141705 - 2142397 + | ribosomal protein S6 modification protein (rimK-3) asnC 2142906 - 2142445 - | AsnC family transcriptional regulator SSO2348 2143901 - 2142903 - | geranylgeranyl hydrogenase, putative SSO2349 2144421 - 2143909 - | hypothetical protein TERM 798 2143944 - 2143934 - G 75 -5.4 -4.78077 | CTGAAGTAAAATAAA GCTA TAA TAGC CAATATTAAAAATCC TERM 799 2144473 - 2144459 - H 72 -5.8 -4.39746 | TAGAAAATAAAAATA TCTATT CCC AATAGA AGAGTGTGAGATATA ansA-like 2144479 - 2145309 + | asparinase, putative (ansA-like) SSO2351 2145310 - 2145849 + | hypothetical protein SSO10258 2146082 - 2145846 - | hypothetical protein SSO2352 2146176 - 2146559 + | hypothetical protein TERM 800 2146547 - 2146559 + F 79 -3.5 -5.55769 | opp_overlap 2146547, overlap 2146540 TAATATTATAAAGGA TTATT GTA AATAA TTTTTTATTCTAACG SSO2353 2146765 - 2147961 + | geranylgeranyl hydrogenase, putative SSO2354 2149548 - 2147932 - | hypothetical protein TERM 801 2148519 - 2148535 + g 76 -9.5 -3.31461 | opp_overlap 2148517 CATGACTATCATATT CTCTTTC TAA GAAAGAG TTATGGCAATCAATA SSO10269 2149579 - 2149869 + | hypothetical protein nagD-like 2149856 - 2150650 + | phosphatase, putative (nagD-like) TERM 802 2151586 - 2151568 - g 70 -3.1 -4.9138 | opp_overlap 2151580, overlap 2151570 2151580 ATTACTGAAATAAAA GAGGGAA GAGGA TTCCCTG GTGGGTATGTTGGTC sdhA 2150698 - 2152398 + | succinate dehydrogenase flavoprotein subunit sdhB 2152400 - 2153350 + | succinate dehydrogenase iron-sulfur subunit sdhC 2153347 - 2154228 + | succinate dehydrogenase subunit C (sdhC) sdhD 2154229 - 2154594 + | succinate dehydrogenase subunit D (sdhD) TERM 803 2154662 - 2154672 + T 100 -6.8 -5.63236 | TGGGAGAGTGAAGTT GAGG CCT CCTC TTTTTCTTTTTAACT SSO2360 2156040 - 2154682 - | hypothetical protein SSO2363 2157185 - 2156037 - | hypothetical protein SSB 2157622 - 2158068 + | single-strand DNA-binding protein SSO10285 2158065 - 2158346 + | hypothetical protein moeA-2 2158360 - 2160012 + | molybdopterin biosynthesis protein (moeA-2) thrB 2160251 - 2161186 + | homoserine kinase metB 2161170 - 2162300 + | hypothetical protein SSO2369 2162611 - 2162297 - | hypothetical protein SSO2370 2163129 - 2162590 - | hypothetical protein SSO2371 2163267 - 2164274 + | hypothetical protein SSO2372 2164305 - 2164847 + | hypothetical protein SSO2373 2165375 - 2164806 - | putative RNA-processing protein SSO2374 2166136 - 2165372 - | hypothetical protein eiF1A 2166465 - 2166139 - | translation initiation factor IF-1A acaB-4 2167706 - 2166513 - | Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-4) SSO2380 2169007 - 2167742 - | hypothetical protein eif2B 2169053 - 2169472 + | translation initiation factor IF-2 subunit beta SSO2382 2169430 - 2169765 + | hypothetical protein SSO2383 2169762 - 2170484 + | hypothetical protein rnhB 2170481 - 2171119 + | ribonuclease HII (rnhB) SSO2385 2171113 - 2172168 + | hypothetical protein TERM 804 2173449 - 2173433 - g 71 -8.7 -3.1552 | overlap 2173431 GCTGAGGGATTAAGA GCTGGAC TAA ATCCAGC TACAGTAGTTAAAAA SSO2386 2172218 - 2174068 + | hypothetical protein gspE-3 2174074 - 2174925 + | Type II secretion system protein, virB homolog (gspE-3) SSO3259 2176030 - 2174900 - | transposase ISC1225 TERM 805 2175964 - 2175943 - G 71 -8.7 -3.14344 | opp_overlap 2175946 2175948, overlap 2175948 TATTTTGGTGAGGAA GACCAGGTG TTAT CACCTTGTC TTCACCACGTGATAA TERM 806 2176102 - 2176073 - R 70 -8.1 -3.11634 | opp_overlap 2176079 2176083 TCTGATATTACCCAA CCAAAATTATTTT TTGT AAAATGATTTTGG GTCTACCGTTAGGCG TERM 807 2176620 - 2176601 - R 93 -10 -4.16016 | opp_overlap 2176597 CGACTCTGCAATAAA GAGGCTCA TGAA TGAGCCCC TAAATATTCCACAAG icaA 2178315 - 2177035 - | glucosaminyltransferase TERM 808 2177941 - 2177911 - G 77 -10.6 -2.91264 | opp_overlap 2177919, overlap 2177913 2177917 2177919 TTCTGCATCCAGATA CACTAACATTTCAG CAT CAGAAATATTAGTG GCGAAGTTTAGTGCT ppa 2178830 - 2178312 - | inorganic pyrophosphatase SSO2391 2179395 - 2178847 - | hypothetical protein thiD-2 2180783 - 2179413 - | phosphomethylpyrimidine kinase (thiD-2) moaE 2181439 - 2180744 - | molybdenum cofactor biosynthesis protein E (moaE) TERM 809 2181102 - 2181121 + gH 70 -3.4 -5.01546 | opp_overlap 2181105, overlap 2181104 2181105 ACATAAACTACTAAA GAACCCGC TTCC GGGGGTGC TTTTTCTCTAAATTT TERM 810 2181116 - 2181105 - GH 74 -7.2 -4.06533 | opp_overlap 2181104 2181105 2181102 TAAACTACTAAAGAA CCCG CTTC CGGG GGTGCTTTTTCTCTA SSO2395 2181477 - 2181932 + | hypothetical protein SSO2398 2184178 - 2181923 - | Iron-sulfur protein, putative TERM 811 2182502 - 2182522 + gF 81 -9 -3.92602 | TAAGAAACCTTTTTT GGTAGCTC TAATT GGGCTACC TTTATAAGATGTTAA TERM 812 2183113 - 2183097 - Gf 78 -9.5 -3.32963 | ATTCCTACTGGACAA GCTTCTT GAC AAGAAGC GCATCCAAAACAGAA TERM 813 2183255 - 2183267 + gF 79 -3.3 -5.50774 | overlap 2183250 TATACACTTTGACGC CTCGA CTA TCGTG TTTTTATTTATTCTC SSO2397 2184160 - 2184975 + | hypothetical protein SSO2399 2184930 - 2185730 + | hypothetical protein panB 2186512 - 2185709 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase SSO2401 2187092 - 2186409 - | hypothetical protein SSO2402 2187140 - 2187886 + | ABC transporter, ATP binding protein SSO2404 2187883 - 2189076 + | hypothetical protein SSO10340 2189109 - 2189342 + | transcription regulator, putative SSO2405 2189883 - 2189569 - | hypothetical protein SSO10342 2190033 - 2190209 + | hypothetical protein SSO2406 2190841 - 2190206 - | hypothetical protein leuA-3 2191893 - 2190850 - | 2-isopropylmalate synthase, putative (leuA-3) TERM 814 2191832 - 2191851 + g 85 -12.2 -3.08679 | opp_overlap 2191819 2191835, overlap 2191835 AATTCTCCTTCTGAA GAAGCAGG GAAA CCTGCTTC TATTACATCAACACC TERM 815 2191848 - 2191835 - G 72 -8.1 -3.61398 | opp_overlap 2191832 2191835 TCTCCTTCTGAAGAA GCAGG GAAA CCTGC TTCTATTACATCAAC TERM 816 2191835 - 2191848 + g 74 -8.1 -3.68988 | opp_overlap 2191835, overlap 2191832 TCTCCTTCTGAAGAA GCAGG GAAA CCTGC TTCTATTACATCAAC SSO2408 2192656 - 2192042 - | hypothetical protein SSO10348 2192886 - 2192668 - | hypothetical protein SSO2409 2193247 - 2192855 - | hypothetical protein SSO2410 2193617 - 2193240 - | hypothetical protein TERM 817 2193593 - 2193580 - G 70 -6.7 -4.05067 | CATTCTATAAAAAGA GAGGA TAGG TCCTC AATTACACGCAGAAG SSO2411 2193650 - 2194153 + | hypothetical protein SSO2412 2194143 - 2194559 + | hypothetical protein SSO2413 2195046 - 2194603 - | hypothetical protein SSO2415 2196502 - 2195006 - | dihydropteroate synthase trxB-3 2196594 - 2197565 + | thioredoxin reductase (trxB-3) SSO2420 2200124 - 2198301 - | AAA ATPase family protein imp3 2197562 - 2198356 + | inositol monophosphosphatase, putative (imp3) TERM 818 2199623 - 2199666 + gT 77 -7.5 -4.08948 | GTGACTCTCTTTTAA CGCCTATTGTGTCTATTTC ATCAAA GAAAAGGATACAAGGGGCG TTCTTTCTAGCATTA SSO2422 2201762 - 2200206 - | phytoene dehydrogenase related protein SSO2423 2201886 - 2203055 + | hypothetical protein gpT-2 2203048 - 2203587 + | purine phosphoribosyltransferase (gpT-2) mcmA1 2205262 - 2203577 - | methylmalonyl-CoA mutase, alpha-subunit, chain A (mcmA1) SSO2426 2205318 - 2205746 + | lactoylglutathione lyase (glyoxalase I), putative SSO2427 2205820 - 2206350 + | hsp 20 family small heat shock protein SSO2428 2206887 - 2206363 - | hypothetical protein tuF-2 2206949 - 2208520 + | elongation factor 1-alpha, putative (tuF-2) SSO2431 2209334 - 2208915 - | hypothetical protein SSO2432 2209361 - 2209930 + | hypothetical protein TERM 819 2209911 - 2209930 + T 74 -5.8 -4.63527 | AGGACTTAATGCGCC TTAGGGAT TTCC ATCCTTAA TTTTTCGGATGCTAA cutC-1 2210416 - 2209901 - | carbon monoxide dehydrogenase, small chain (cutC-1) cutB-1 2211249 - 2210413 - | carbon monoxide dehydrogenase, medium chain. (cutB-1) TERM 820 2211180 - 2211204 + g 91 -11.5 -4.34267 | GTTTAGCGTCATCGT GAGTCTCTAGA AAC TCTAGAGCCTC TTTTACATTATCTGG cobA 2212210 - 2211482 - | uroporphyrinogen III methylase (cobA) SSO2436 2212797 - 2212210 - | hypothetical protein SSO2437 2213865 - 2213038 - | hypothetical protein SSO2438 2213911 - 2215062 + | hypothetical protein SSO2439 2215007 - 2215795 + | hypothetical protein glnA-2 2215993 - 2217270 + | glutamine synthetase (glutamate ammonia ligase) (GS). (glnA-2) TERM 821 2217860 - 2217843 - g 70 -2.7 -5.18726 | overlap 2217846 TGGGCATAATAAAAA TAAGCTT GAAA AAGCTAA AGAACTAGGAGCTGA adh-7 2217271 - 2218257 + | zinc-containing alcohol dehydrogenase rpl13E 2218586 - 2218254 - | 50S ribosomal protein L13e rtcA 2219565 - 2218528 - | RNA 3'-terminal-phosphate cyclase SSO2445 2219555 - 2219998 + | hypothetical protein dinP 2221033 - 2219975 - | DNA polymerase IV rbsK-2 2221881 - 2221030 - | ribokinase (rbsK-2) TERM 822 2222870 - 2222884 + G 78 -6.4 -4.64157 | opp_overlap 2222857 2222872, overlap 2222860 TAGCAGCTAGAAATC TAGCTG TTA CGGCTA TTTTCTCGTTCTTTA SSO2450 2222038 - 2223468 + | TATA binding protein (TBP)-interacting protein (TIP49-like), putative guaA 2223552 - 2224118 + | GMP synthase subunit A SSO2452 2224909 - 2224121 - | hypothetical protein SSO2453 2224988 - 2225473 + | hypothetical protein nfi 2225443 - 2226039 + | endonuclease V (nfi) entB-like2 2226044 - 2226661 + | isochorismatase, putative (entB-like2) TERM 823 2227379 - 2227390 + G 74 -4.4 -4.96848 | opp_overlap 2227379 TTTTGATGACTAGAA CTGA TGCT TCAG TTTTTGTATCAGCAA SSO2457 2226670 - 2227659 + | hypothetical protein SSO2458 2228342 - 2227656 - | hypothetical protein TERM 824 2227833 - 2227846 + g 76 -3.1 -5.27335 | AACTCTATATCCCAA GTGTG GATA TACAC TTTTTCTTTCACCGA TERM 825 2228788 - 2228755 - g 79 -6.9 -4.37971 | gap 1, opp_overlap 2228755 2228755 AAAATAGTAGCAAAA GTTGAT-TCAACCTTG GTT CAAGATGGACATCAAC TCTATCATCACACCA SSO2459 2228374 - 2229513 + | hypothetical protein SSO2460 2229623 - 2230285 + | hypothetical protein SSO2461 2231260 - 2230274 - | phosphate permease, putative TERM 826 2230901 - 2230878 - G 78 -11.2 -2.71097 | overlap 2230874 AACTCTATAAATCCA TGCGATATTA AGGT TAATATCGCA ATTGACGGATAAAAC TERM 827 2232240 - 2232252 + G 73 -9.1 -3.37198 | overlap 2232239 ATTGGAGACCAGTTC CCCTC ATG GAGGG TGTTATGTATCCAGA SSO2462 2231618 - 2233765 + | DNA helicase related protein ppcB 2235473 - 2233902 - | propionyl-CoA carboxylase beta subunit (ppcB) SSO2464 2236058 - 2235498 - | biotin carboxyl carrier protein of propionyl-CoA carboxylase beta subunit accC 2237539 - 2236007 - | biotin carboxylase a subunit of propionyl-CoA carboxylase (accC) SSO2468 2239571 - 2237964 - | ABC transporter, putative SSO2469 2240280 - 2239564 - | ABC transporter, ATP binding protein, putative TERM 828 2240680 - 2240661 - R 70 -4.4 -4.78107 | opp_overlap 2240661, overlap 2240648 2240669 TATTAGTATTAAAAA CTAAAAAA TAAA CTTTTTAG TTTCGGTTTACTGTC TERM 829 2240679 - 2240669 - R 75 -2.6 -5.54079 | opp_overlap 2240661, overlap 2240661 TTAAAAACTAAAAAA TAAA CTT TTTA GTTTCGGTTTACTGT leuD 2241174 - 2240677 - | 3-isopropylmalate dehydratase small subunit leuC 2242425 - 2241175 - | 3-isopropylmalate dehydratase large subunit phrB 2243807 - 2242506 - | deoxyribodipyrimidine photo-lyase TERM 830 2242533 - 2242553 + g 77 -10.5 -2.8315 | opp_overlap 2242532, overlap 2242532 AGATTTCCTACATAC CTCGTAAAG TCT CTTTGCGAG ATTTACCCTTATTCT SSO2473 2243888 - 2245726 + | glucan 1,4 alpha glucosidase (glucoamylase) TERM 831 2246063 - 2246052 - g 81 -3 -5.72053 | TAATTAAAGAAAAAA TAGA AACT TCTA AAAAAGGGAGAAGGG SSO2474 2245817 - 2246212 + | transcriptional regulator SSO10449 2246516 - 2246229 - | hypothetical protein SSO2475 2246664 - 2247398 + | hypothetical protein SSO2476 2247725 - 2249242 + | metabolite permease, putative SSO2478 2249306 - 2250049 + | NAD-dependent deacetylase SSO2479 2251018 - 2250305 - | sugar phosphate nucleotydyl transferase TERM 832 2251137 - 2251149 + H 82 -6.3 -4.9445 | TCCAACTCTTTTACG TAACC ACT GGTTA TTTTTAATTACTTCT SSO2481 2252492 - 2253541 + | hypothetical protein sucD 2254309 - 2253527 - | succinyl-CoA synthetase, alpha subunit (sucD) sucC 2255388 - 2254375 - | succinyl-CoA synthetase, beta subunit (sucC) ntH-2 2256156 - 2255473 - | DNA endonuclease III (ntH-2) SSO2485 2257112 - 2256156 - | hypothetical protein TERM 833 2256389 - 2256403 + g 75 -7.1 -4.30014 | TCCTATACATTACTA CTGCC TCCAT GGCAG TTTTACCTTGATGCG thrS 2257164 - 2258801 + | threonyl-tRNA synthetase (thrS) ogt 2258839 - 2259294 + | methylated DNA protein cysteine S-methyltransferase. (DNA 6 O methylguanine)(protein L cysteine S methyltransferase) (ogt) soxE-like 2259613 - 2260398 + | quinol oxidase-2, sulfocyanin (blue copper protein), putative (soxE-like) SSO2489 2260444 - 2261208 + | hypothetical protein clcE 2261252 - 2262235 + | maleylacetate reductase (clcE) SSO2491 2262237 - 2262683 + | hypothetical protein TERM 834 2262781 - 2262761 - f 79 -9.9 -2.8829 | opp_overlap 2262760 2262758 2262761 2262763, overlap 2262760 2262763 ATATTAGGATGAAAG TAGTTAGAA TCT TTCTAACTA ATCTTTATTAAGGGA TERM 835 2262761 - 2262781 + F 79 -9.9 -2.80244 | opp_overlap 2262761 2262760 2262763, overlap 2262760 2262758 2262763 ATATTAGGATGAAAG TAGTTAGAA TCT TTCTAACTA ATCTTTATTAAGGGA TERM 836 2262779 - 2262763 - f 70 -8.1 -2.98761 | opp_overlap 2262761 2262760 2262758 2262763, overlap 2262761 2262760 ATTAGGATGAAAGTA GTTAGAA TCT TTCTAAC TAATCTTTATTAAGG SSO2492 2262817 - 2263422 + | hypothetical protein lipP-1 2263553 - 2264470 + | lipase (lipP-1) adh-8 2264548 - 2265558 + | putative alcohol dehydrogenase acaB-5 2266731 - 2265544 - | acetyl-CoA acetyltransferase acd-like2 2267669 - 2266770 - | Acyl-CoA dehydrogenase related protein (acd-like2) nrdB 2268600 - 2267674 - | ribonucleotide-diphosphate reductase subunit beta fabG 2269448 - 2268690 - | 3-ketoacyl-(acyl-carrier-protein) reductase adh-9 2270529 - 2269483 - | zinc-containing alcohol dehydrogenase TERM 837 2270714 - 2270728 + r 74 -7.2 -4.10453 | GTCAACTTTTAATGG TAGTAG CCT CTACTA TTTTCAAACAATTTA SSO2502 2271217 - 2270813 - | hypothetical protein abfD-1 2272671 - 2271280 - | 4-hydroxybutyryl-CoA dehydratase (abfD-1) SSO2505 2274935 - 2273466 - | sugar transport protein TERM 838 2274337 - 2274323 - G 77 -10 -3.23152 | opp_overlap 2274322 2274325, overlap 2274315 ATACTAATGCAGCAA CAGCCA TTA TGGCTG CTATTCCAAAGGCTA SSO2506 2275200 - 2275796 + | transcriptional regulator SSO2507 2276241 - 2275798 - | hypothetical protein acaB-6 2276632 - 2277774 + | Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-6) SSO2509 2277771 - 2278145 + | hypothetical protein alkK-2 2278488 - 2280146 + | medium-chain-fatty-acid--CoA ligase (alkK-2) acd-4 2280182 - 2281294 + | Acyl-CoA dehydrogenase (acd-4) SSO2514 2283303 - 2281312 - | 3-hydroxyacyl-CoA dehydrogenase/enoyl CoA hydratase TERM 839 2282980 - 2283002 + g 89 -7.8 -5.00642 | opp_overlap 2282977, overlap 2282982 GGGTGGTAATAATTC GTCAAGTTTT GAG AAAACTTGCC TTTTTATATCCATTC SSO2515 2284317 - 2283385 - | hypothetical protein TERM 840 2285803 - 2285823 + G 70 -3.2 -5.04868 | GTATAGGGCATTTAG GTGGAGTC ATTGG GCCTCTAC TTTTATTTCCTTTAA SSO2516 2284524 - 2285990 + | sugar transport protein est 2286281 - 2287036 + | carboxylesterase SSO2518 2287042 - 2288103 + | esterase, putative SSO2519 2289037 - 2288111 - | cyclase/dehydrase, putative TERM 841 2288826 - 2288840 + g 73 -5.8 -4.42976 | TCTTCATGTTCATGG GTATTT ATC AAATAC TTTATTGGTTTGTCA hpcE-1 2289080 - 2290036 + | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1) TERM 842 2290065 - 2290027 - T 83 -5.7 -5.23316 | gap 2 TATTATAGTAAAAAA TCATCAA-TAGAAA-ACGT TAA ACATTTTTCTAATTGATGA TGCAATATGATGTAT lipP-2 2290965 - 2290030 - | lipase (lipP-2) TERM 843 2290738 - 2290751 + g 70 -6.7 -4.06055 | opp_overlap 2290734 ATAATACACTACAGC GGGAA GGTT TTCCC TTTGGTTTGGAAAAT php 2291944 - 2291000 - | aryldialkylphosphatase (phosphotriesterase) (paraoxonase), putative (PHP) fadD-2 2292023 - 2293702 + | acyl-CoA synthetase SSO2524 2294201 - 2293755 - | hypothetical protein glpA 2295541 - 2294204 - | glycerol-3-phosphate dehydrogenase chain A (glpA) TERM 844 2294310 - 2294322 + g 80 -6.3 -5.03715 | CTCCTTACTATTACT TTAGG TAG CCTAA TTTTTTCAGCGTAAT pepQ-like3 2297181 - 2295958 - | Prolidase (Xaa-Pro dipeptidase) (pepQ-like3) SSO2528 2298469 - 2297189 - | metabolite transport protein SSO2529 2299446 - 2299078 - | hypothetical protein SSO2530 2299814 - 2299422 - | hypothetical protein SSO2531 2300590 - 2300018 - | hypothetical protein SSO2532 2300632 - 2301045 + | hypothetical protein celB 2302002 - 2301034 - | cellulase (endo 1,4 beta glucanase), putative (celB) TERM 845 2302647 - 2302671 + G 70 -6.5 -4.06384 | opp_overlap 2302646, overlap 2302648 2302668 AGCGCAGTGGAAAGC TTAGTGGATTT GAA AAAGCCACTAG TTTGTGCTGTTAACG paaF-5 2302377 - 2303117 + | enoyl CoA hydratase (paaF-5) adh-10 2303254 - 2304297 + | zinc-containing alcohol dehydrogenase SSO2537 2306178 - 2304367 - | phosphoenolpyruvate carboxykinase glgP 2308109 - 2306712 - | glucan phosphorylase, putative (glgP or malP) TERM 846 2307004 - 2306992 - G 73 -6.3 -4.36914 | CCTGCTTTCATAAAA CTAGT ACC ACTAG CTTCCCAGCCGGAGT SSO2539 2308748 - 2308155 - | hypothetical protein SSO2540 2310050 - 2309085 - | transposase ISC1439 SSO2541 2311164 - 2310331 - | hypothetical protein TERM 847 2311208 - 2311194 - H 100 -7.2 -5.61881 | opp_overlap 2311193, overlap 2311188 TCTTAAAAATAAAAA GAGTTT TAG AAACTC CTCGTTGTACGGTAG TERM 848 2311810 - 2311784 - H 88 -11.7 -2.88375 | overlap 2311781 ATATAAAACATATTA GTCAGATCTGC GTATT ACAGATCTGAC TGGGGTTGAGGCCGT SSO2542 2311926 - 2312876 + | transposon ISC1190 SSO10604 2313840 - 2313547 - | partial transposase ISC1058 SSO2544 2314380 - 2313850 - | hypothetical protein SSO2545 2314425 - 2315126 + | hypothetical protein SSO2546 2315129 - 2315824 + | hypothetical protein TERM 849 2315869 - 2315880 + GF 71 -4.4 -4.71776 | overlap 2315872 2315874 TGACACCCATGATAG CCTT ATGG AAGG TTTTCTTCCATGTTG TERM 850 2316898 - 2316908 + GF 70 -5.4 -4.38273 | TAACTGAAATGATAT TAGC ACC GCTA TTTCTTCTCGTATCT SSO2547 2315793 - 2318141 + | hypothetical protein SSO2549 2318128 - 2319645 + | amino acid transporter, putative SSO2550 2319944 - 2319642 - | hypothetical protein TERM 851 2319745 - 2319758 + g 78 -3.9 -5.38497 | TATTTATCCTTAGCG TACTT TAGT AAGTA TTTTTTGCTTTCACT ssh7A 2320224 - 2320430 + | 7 KD DNA-binding protein (SSO7D) (SSH7A) (ssh7A /Sso7d-1) SSO2551 2320573 - 2324499 + | serine protease SSO2552 2324504 - 2326336 + | hypothetical protein SSO2553 2327317 - 2326298 - | hypothetical protein TERM 852 2327003 - 2326985 - G 78 -9 -3.737 | opp_overlap 2326982 2326985 TAATGCCTTATCAAA TGACATTT GAA AAATGTCA TCGTTAATAATGCTC glnA-3 2328642 - 2327353 - | glutamine synthetase (glutamate ammonia ligase) (GS). (glnA-3) TERM 853 2328669 - 2328654 - R 72 -4.8 -4.92757 | TCATTAATAATAAAA TAAACT TGCT AGTTTA TTAACAATTATCATT SSO2555 2329435 - 2328680 - | hypothetical protein SSO2556 2329562 - 2329939 + | hypothetical protein SSO2557 2330291 - 2331250 + | transposase ISC1234 SSO2558 2331433 - 2332599 + | sugar transporter TERM 854 2333398 - 2333415 + G 70 -8.5 -3.35775 | overlap 2333397 ATCAACCATAATCCT TTCGTCA TCGT TGACGAA TATTTAAGGACTAGT pdhD-4 2332633 - 2333862 + | dihydrolipoamide dehydrogenase (pdhD-4) SSO2560 2333935 - 2334618 + | nitroreductase, bluB homolog, putative SSO2561 2335153 - 2334605 - | hypothetical protein TERM 855 2334649 - 2334633 - G 72 -9.5 -2.64274 | overlap 2334629 AGGTTTTCAAATTTA GCCTTAA CTC TTAAGGC TCTACCCATTTTTAT TERM 856 2334945 - 2334935 - G 70 -3.2 -5.02606 | TACTAAATAATAAAA TGGA TAT CCCA AAATAGTAATTCTCA TERM 857 2335750 - 2335722 - g 89 -10.4 -4.09827 | gap 1 GAGAATACAACTAAA CCGGCGAAGT-TC AACC GAGACTTCGCCAG GTCCGCCCTCAAGAT TERM 858 2336070 - 2336099 + G 84 -11.5 -3.15861 | gap 1 GGATTGGTTCAAGCT GCG-ATCTTCCTCC TGG GGAGGAAGAGGCGC TTCCTGGACGTGATC SSO2562 2335698 - 2336555 + | transposon ISC1359 Orf1 SSO2566 2337624 - 2336560 - | transposase ISC1217 TERM 859 2336738 - 2336720 - G 71 -9.6 -2.50994 | overlap 2336719 2336737 TTCAAGGCCACGAAG CCTGAGTT CCT AACCCAGG TCAAGAAGGACCCAC SSO2567 2337818 - 2338777 + | transposase ISC1234 SSO10674 2338953 - 2339186 + | second ORF in transposon ISC1359 TERM 860 2339684 - 2339698 + F 88 -11.4 -3.26649 | ATCTTACGTAGATCG GGGTCG GAA CGACCC TTAGTGTGGAGCTCT SSO2568 2340175 - 2341242 + | hypothetical protein TERM 861 2341429 - 2341441 + G 74 -4.8 -4.8667 | opp_overlap 2341429 2341438 TACGCGGATCCAATA TGGG GAGAA CCCA TTTTTATACCCTATG SSO2569 2341282 - 2342274 + | hypothetical protein SSO2570 2343103 - 2342279 - | hypothetical protein sfsA 2343841 - 2343119 - | sugar fermentation stimulation protein A SSO2572 2344786 - 2344187 - | hypothetical protein SSO2573 2345217 - 2344828 - | hypothetical protein zfx-1 2345414 - 2345728 + | ferredoxin (zfx-1) SSO2575 2345762 - 2347282 + | hypothetical protein SSO2577 2347621 - 2348139 + | partial transposase ISC1058 TERM 862 2348360 - 2348338 - f 70 -6.4 -4.27617 | TATATTGCACCAAAA TCCTTATAAA CTC TTTCTAAGGA AGCCTATACTACATG SSO10704 2348373 - 2348657 + | hypothetical protein SSO2579 2349524 - 2349904 + | hypothetical protein TERM 863 2350008 - 2350018 + T 76 -5.4 -5.08088 | TCAAGGTGTTTTTCG GTGT TAT ACAC TTTTTCTTCAAGCTT SSO2581 2351055 - 2350288 - | hypothetical protein TERM 864 2350893 - 2350913 + g 79 -7 -4.53034 | TGCCTAGGAAATTCG GATTTACA TAAAC TGTAAATC TTTTGATTATATCCC SSO2582 2351713 - 2351114 - | hypothetical protein sqdB 2352945 - 2351776 - | sulfolipid biosynthesis protein (sqdB) sqdB 2354019 - 2353036 - | L-lactate dehydrogenase (sqdB) SSO2586 2354060 - 2355367 + | hypothetical protein prpB 2355342 - 2356199 + | carboxyphosphonoenolpyruvate phosphonomutase SSO2588 2356224 - 2356652 + | hypothetical protein TERM 865 2357025 - 2357009 - g 78 -3.7 -5.4182 | opp_overlap 2357024, overlap 2357013 AACGATAAAGAAAAA GCAATTA GCA TTATTGC TAAAATGGCTACTCT SSO2589 2356652 - 2357785 + | methylcitrate synthase SSO2590 2357820 - 2358191 + | hypothetical protein SSO2591 2358685 - 2358170 - | hypothetical protein tpiA 2358713 - 2359396 + | triosephosphate isomerase SSO2594 2360061 - 2359681 - | hypothetical protein SSO2595 2360494 - 2361018 + | hypothetical protein agxT 2362596 - 2361442 - | Serine-pyruvate aminotransferase (agxT) tenA-2 2363285 - 2362611 - | transcriptional activator (tenA-2) pcm 2363401 - 2364111 + | L-isoaspartyl protein carboxyl methyltransferase (pcm) SSO2600 2364144 - 2364893 + | ABC transporter, ATP binding protein SSO2601 2364890 - 2366251 + | hypothetical protein SSO2602 2369225 - 2366253 - | hypothetical protein TERM 866 2369521 - 2369489 - H 77 -9.1 -3.31144 | opp_overlap 2369481 2369482, overlap 2369490 CTCTGATGCTGAGAA GGGCTCGGCTTGATC TGT GATGAACCCGAGCCA TGCTAACTGAGTTTA TERM 867 2369520 - 2369490 - H 89 -12.6 -2.58544 | opp_overlap 2369481 2369482, overlap 2369489 TCTGATGCTGAGAAG GGCTCGGCTTGATC TGT GATGAACCCGAGCC ATGCTAACTGAGTTT SSO2603 2369804 - 2370178 + | hsp 20 family small heat shock protein SSO2605 2371680 - 2370190 - | ABC transporter SSO2606 2371900 - 2373165 + | hypothetical protein SSO2607 2373743 - 2373162 - | hypothetical protein SSO2608 2374863 - 2373790 - | hypothetical protein SSO2609 2376764 - 2375511 - | trehalose phosphorylase, putative SSO2610 2377405 - 2376749 - | hypothetical protein SSO2611 2377962 - 2377462 - | hypothetical protein SSO2612 2378160 - 2379053 + | HtrA like serine protease (periplasmic) TERM 868 2379030 - 2379040 + F 71 -6.8 -4.13872 | ATAGAACTTTCGATA CCAG TCC CTGG TTTATCTACTTAAAT bcp-4 2379111 - 2379581 + | peroxiredoxin dppF-3 2380937 - 2379966 - | peptide ABC transporter ATP-binding protein TERM 869 2380031 - 2380043 + g 78 -9.1 -3.75718 | TTCTCCCATTTATTT CCACC AAT GGTGG TTCCTTTTCCTTACA TERM 870 2380098 - 2380110 + g 83 -9.1 -4.1822 | GGGATTGAATCTGCA TCCGC TAG GCGGA TTTATTAAGCTGGGC TERM 871 2380750 - 2380768 + g 72 -8.2 -3.53012 | AGTACCTTGCCTAAT GTGGTTTT ACC AGAACCAC TTTCACCCACAACAC dppD-3 2381904 - 2380930 - | peptide ABC transporter ATP-binding protein dppC-3 2382801 - 2381905 - | peptide ABC transporter permease dppB-3 2383825 - 2382794 - | peptide ABC transporter permease TERM 872 2383759 - 2383747 - G 70 -2.7 -5.22006 | GTATCATAATAAAAA CCAAT ATA ATTAG TAATATTAGGGTAAT TERM 873 2383819 - 2383835 + g 81 -9.5 -3.67588 | opp_overlap 2383815 2383811 2383810 AGAAAACTATATTTA TGGACAT ACC ATGTCCA TTTAAATAAAGTTTG TERM 874 2383917 - 2383904 - R 86 -3.9 -5.77734 | AAAGAAAAAGAAAAA TAAAG ATGA CTTTA GAACCCTGGACCTCC dppA 2386095 - 2383915 - | peptide ABC transporter periplasmic peptide-binding protein SSO2620 2387187 - 2386240 - | hypothetical protein SSO2621 2388240 - 2387230 - | hypothetical protein paaI 2388715 - 2388350 - | phenylacetic acid degradation protein PaaI paaF-6 2389468 - 2388719 - | enoyl-CoA hydratase paaF-7 2390252 - 2389452 - | enoyl CoA hydratase (paaF-7) acaB-7 2390314 - 2391477 + | acetyl-CoA acetyltransferase SSO2626 2391484 - 2391870 + | hypothetical protein SSO10784 2391867 - 2392121 + | CoA-ligase / coenzyme F390 synthetase, putative TERM 875 2393116 - 2393134 + G 72 -8.2 -3.57971 | GGTGGAGTTTGTGAG TTTAGGCA CAC TGCCTAGA TTTGAGGGTAAGTCT SSO2627 2392154 - 2393173 + | CoA-ligase / coenzyme F390 synthetase, putative SSO2628 2393230 - 2393592 + | hypothetical protein SSO10788 2393762 - 2393995 + | hypothetical protein SSO2629 2394008 - 2395165 + | oxidoreductase (flavoprotein) SSO2631 2395167 - 2395547 + | hypothetical protein SSO2632 2395541 - 2396674 + | hypothetical protein SSO2633 2396744 - 2397097 + | hypothetical protein SSO2634 2397809 - 2397387 - | hypothetical protein SSO2635 2397949 - 2399346 + | hypothetical protein TERM 876 2400311 - 2400353 + G 70 -8.4 -3.34233 | opp_overlap 2400310, overlap 2400310 2400309 TCAAGTCAAGTAAAT CCCCCTTCCGATACTAGGGG GAG TTCTTGGTATAGGAGGGAGG TTATGAAGGTTATAA cutB-2 2399552 - 2400400 + | carbon monoxide dehydrogenase, medium chain. (cutB-2) cutC-2 2400844 - 2400659 - | carbon monoxide dehydrogenase, small chain. carboxy-end fragment (cutC-2) cutC-2 2400401 - 2400892 + | carbon monoxide dehydrogenase, small chain. amino-end fragment (cutC-2) TERM 877 2400936 - 2400917 - g 80 -6.6 -4.77157 | opp_overlap 2400920 GCAAGCCAGTAAAAA GAATTTAT GACG ATAAATTC GTAACAGGTAGAAGC TERM 878 2402515 - 2402504 - g 74 -3 -5.25803 | AAGTTGCAGAAAAAA TCTT AGAT AAGA TGAAGAGAATTGCAG cutA-4 2400889 - 2403138 + | carbon monoxide dehydrogenase, large chain (cutA-4) SSO2640 2403261 - 2403581 + | hypothetical protein TERM 879 2403999 - 2403983 - g 74 -8.1 -3.80018 | opp_overlap 2403982 TTTATATACCAACAA TCCTATT ATT AATAGGA GTAATATTTCTGATA SSO2641 2403574 - 2404050 + | hypothetical protein rr 2404133 - 2404567 + | rubrerythrin (rr) glpC 2404567 - 2405754 + | glycerol-3-phosphate dehydrogenase chain C (anaerobic) (glpC) SSO2644 2405747 - 2406313 + | hypothetical protein SSO2645 2406310 - 2406882 + | hypothetical protein SSO2646 2407765 - 2406950 - | hypothetical protein SSO2647 2408673 - 2407744 - | ABC transporter, ATP binding protein SSO2648 2408848 - 2409285 + | hypothetical protein pacS 2411635 - 2409368 - | cation transporting ATPase (pacS) SSO2652 2412356 - 2411865 - | AsnC family transcriptional regulator SSO2653 2413027 - 2412368 - | hypothetical protein soxC 2413560 - 2413438 - | quinol oxidase (SoxABC), cytochrome B subunit, C-terminal part (soxC) soxC 2415247 - 2413574 - | quinol oxidase (SoxABC), cytochrome B subunit (soxC) soxB 2416775 - 2415240 - | quinol oxidase (SoxABC), cytochrome aa3 subunit (soxB) TERM 880 2415527 - 2415513 - G 73 -5.7 -4.70659 | opp_overlap 2415513 TCCTACACCTAAAAA TGGTG CAGTC CACCA TATCATCCCAATTCT TERM 881 2416602 - 2416626 + g 74 -10.1 -2.61997 | opp_overlap 2416604, overlap 2416600 2416605 TAATGCACTGTAGTA TAGTTCTCCCA CGT TGGGGGAATTA CTATTATATGTCAAG TERM 882 2416605 - 2416623 + g 76 -9.6 -3.45514 | opp_overlap 2416604, overlap 2416602 2416600 TGCACTGTAGTATAG TTCTCCCA CGT TGGGGGAA TTACTATTATATGTC TERM 883 2416716 - 2416728 + g 76 -6.3 -4.59773 | opp_overlap 2416709 2416716 2416715 AGTGTAAAGCCAAAC TACGT TTA ACGTA TTTTTAGGGATAACA soxA 2417281 - 2416772 - | quinol oxidase (SoxABC), subunit II (soxA) SSO2659 2418059 - 2417637 - | partial transposase in ISC1173 soxL-1 2418081 - 2419055 + | Rieske iron-sulfur protein-1 (soxL-1) SSO2661 2418937 - 2419497 + | hypothetical protein SSO2662 2419490 - 2419900 + | hypothetical protein SSO2663 2420575 - 2420009 - | hypothetical protein fabG-8 2420871 - 2421629 + | 3-oxoacyl-(acyl carrier protein) reductase (fabG-8) SSO2665 2422811 - 2421630 - | muconate cycloisomerase related protein SSO2666 2422875 - 2423348 + | hypothetical protein SSO2667 2423246 - 2423854 + | hypothetical protein SSO2668 2425000 - 2423999 - | ABC transporter, permease protein TERM 884 2426090 - 2426063 - g 76 -9.2 -3.37522 | opp_overlap 2426060, overlap 2426049 ACTTGAGGTAATTAA TATACCTCAACC ATTT GGCTGGGGTATA GCATTCAATCTGAAG TERM 885 2426316 - 2426304 - g 71 -9.1 -3.14686 | overlap 2426303 GTTAATTTAACAAAG GCAGC ACA GCTGC TTAAGAGTGTAGGGT SSO2669 2425098 - 2427179 + | ABC transporter, periplasmic component TERM 886 2427220 - 2427230 + TF 75 -2.6 -5.54403 | AAAGGTAGTATAGTC TTTT TTA AAAA TTTTTCTTCTTTTTT SSO2671 2428122 - 2427250 - | ABC transporter, permease protein SSO2670 2428073 - 2429161 + | ABC transporter, ATP binding protein TERM 887 2429401 - 2429389 - gfH 84 -3.5 -5.70761 | AAAATAAAAGAAAAA TATTT AAA AAATA TAGAAAGGATGTACA SSO2672 2429142 - 2430116 + | ABC transporter, ATP binding protein TERM 888 2430563 - 2430547 - gT 75 -8.1 -3.65426 | opp_overlap 2430546, overlap 2430540 TTAGAAATTTCTAAA CTCTTTA AAA TAAAGAG AATTACTATAGCACC nagA 2430019 - 2431206 + | N-acetylglucosamine-6-phosphate deacetylase (nagA) SSO2674 2433222 - 2431276 - | hypothetical protein SSO2675 2433256 - 2435610 + | Tricorn protease interacting factor F3 SSO2677 2436109 - 2435615 - | hypothetical protein SSO2676 2436090 - 2436854 + | hypothetical protein SSO2678 2438381 - 2436843 - | hypothetical protein SSO2679 2440404 - 2438416 - | hypothetical protein gspE-2 2441932 - 2440385 - | Type II secretion system protein, virB homolog (gspE-2) TERM 889 2440585 - 2440595 + g 70 -5.4 -4.51743 | CTTTTAAATTATCTG GAAC AAA GTTC TTTCTTTCATAGTCA TERM 890 2441973 - 2441950 - R 72 -2.6 -5.47821 | opp_overlap 2441950 ACCTATTTAAAAAAA TAAAAATAAA ATAC TTTATTGTTA CTTATTGGTCGATAA SSO2681 2442394 - 2441975 - | hypothetical protein SSO2683 2442811 - 2442422 - | hypothetical protein SSO2684 2443225 - 2442815 - | hypothetical protein SSO2686 2444086 - 2443316 - | hypothetical protein TERM 891 2444164 - 2444149 - g 75 -9 -3.54297 | opp_overlap 2444149 ATTCACCAATCATAA TGGCGA AAAA TCGCCA TTCTCTTCATCCTAT TERM 892 2444149 - 2444164 + G 78 -9 -3.73144 | opp_overlap 2444149 ATTCACCAATCATAA TGGCGA AAAA TCGCCA TTCTCTTCATCCTAT SSO2687 2444148 - 2444459 + | hypothetical protein merR 2445102 - 2444755 - | mercury resistance operon repressor, (merR) TERM 893 2445133 - 2445163 + H 95 -9.3 -5.1485 | gap 1, opp_overlap 2445132 2445133, overlap 2445155 ATAGGTGAAAATAAG TCTTTC-TATGAAC ATAT GTTCATATGAAAGA TTTTTATATTAGTTG TERM 894 2445163 - 2445133 - H 74 -9.3 -3.11767 | gap 1, opp_overlap 2445133 2445155, overlap 2445132 ATAGGTGAAAATAAG TCTTTC-TATGAAC ATAT GTTCATATGAAAGA TTTTTATATTAGTTG merA 2445401 - 2446762 + | mercuric reductase (Hg(II) reductase) (merA) SSO2690 2446903 - 2447271 + | hypothetical protein SSO2691 2447407 - 2447808 + | hypothetical protein apeH-3 2449580 - 2447805 - | acylaminoacyl-peptidase TERM 895 2450418 - 2450398 - g 90 -6.9 -5.14563 | TTGTTGATGAAAAAA GCGTTCT CTCATTT AGAACGC ATCCATCCCTAAAGG htpX-like 2449611 - 2450486 + | heat shock protein hspX acaB-8 2450948 - 2452078 + | Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-8) SSO2699 2452662 - 2452342 - | hypothetical protein SSO2700 2453570 - 2452659 - | hypothetical protein TERM 896 2453647 - 2453637 - H 74 -4 -5.15526 | AGATAAAACGAAAAA TAGT TAA ACTA CTAAATTCTCTTGTA SSO2701 2453677 - 2454852 + | major facilitator superfamily permease SSO2702 2455870 - 2454827 - | hypothetical protein SSO2703 2456188 - 2456583 + | hypothetical protein TERM 897 2456913 - 2456925 + G 76 -6.3 -4.67234 | opp_overlap 2456912 2456905 2456913 GTGAGAATGTACAAT TTAGG ATT CCTAA TTTTTACAATTGCAT SSO2704 2456673 - 2458376 + | permease, multidrug efflux SSO2705 2458404 - 2459261 + | regucalcin-like protein mtaP 2459292 - 2460002 + | 5'-methylthioadenosine phosphorylase (mtaP) TERM 898 2460261 - 2460249 - T 85 -4.9 -5.64006 | AGGGAAGTAAAAAAA CAAAT TAA ATTTG TGGACCCGGTAATAT SSO2707 2460654 - 2460253 - | hypothetical protein TERM 899 2461078 - 2461062 - g 72 -3.6 -5.00616 | overlap 2461063 TTTGGGTTTAAAAAA GCTGCG TGGTT CGCAGT TCACATTTTAGCTAG SSO2708 2460870 - 2461895 + | hydrogenase expression/formation factor related protein SSO2710 2462790 - 2461882 - | hypothetical protein SSO2711 2462910 - 2463539 + | hypothetical protein SSO2712 2463617 - 2465053 + | hypothetical protein SSO2713 2465096 - 2466040 + | ABC transporter, ATP binding protein SSO2714 2466033 - 2467679 + | ABC transporter, permease TERM 900 2468557 - 2468576 + G 70 -8.6 -2.98181 | overlap 2468556 2468571 CAATCTTAGCTAATT TCCTCCAA GGGA TTGGAGGG CTTTCCTTGAGTTTC SSO2716 2467764 - 2469173 + | permease, multidrug resistance protein adh-11 2470119 - 2469166 - | zinc-containing alcohol dehydrogenase SSO2718 2471381 - 2470122 - | permease amaB 2471736 - 2472941 + | allantoate amidohydrolase TERM 901 2473100 - 2473088 - g 89 -7.7 -4.93877 | GTGGAGTAAACAAAA GGGAT GGG ATCCC ATAATCGTATCAAGT SSO2720 2473023 - 2474357 + | aminotransferase SSO2721 2474669 - 2475163 + | transposon ISC1225 Orf1 SSO2722 2476134 - 2475379 - | second ORF in transposon ISC1229 SSO2723 2476447 - 2476070 - | transposon ISC1229 Orf1 TERM 902 2476457 - 2476483 + H 74 -9.4 -2.75039 | overlap 2476448 GACCATTTTTCCCCA GCTGAGGAGAAT ATT ACTCTCCCCAGC TAATTAACCTATATA SSO10982 2476622 - 2476876 + | partial transposase ISC1225 TERM 903 2476957 - 2476993 + F 100 -16.2 -4.08216 | gap 1, opp_overlap 2476991, overlap 2476985 TTATTTTTACGGAGG TGATTTTGGGTCTACCG GTTA CGGTAGACC-AAAATCA TTTTACAAAAAATAA TERM 904 2476985 - 2477014 + F 70 -8.1 -3.11634 | opp_overlap 2476991 2476994, overlap 2476957 ACCGGTTACGGTAGA CCAAAATCATTTT ACAA AAAATAATTTTGG TTGGGTAATATCAGA TERM 905 2477123 - 2477144 + G 71 -8.7 -3.14344 | opp_overlap 2477102 2477128, overlap 2477104 TTATCACGTGGTGAA GACAAGGTG ATAA CACCTGGTC TTCCTCACCAAAATA SSO2724 2477057 - 2478187 + | transposase ISC1225 SSO2725 2479213 - 2478239 - | hypothetical protein SSO2726 2480882 - 2479293 - | amino acid transporter, putative TERM 906 2480687 - 2480675 - G 74 -2.7 -5.27477 | ACGCTAAGTAAAAAA GAAAT GCC ATTCC TAAGGTCGGTAATAG gabT-1 2481492 - 2482814 + | 4-aminobutyrate aminotransferase (gabT-1) SSO2728 2482890 - 2484452 + | amino acid transporter, putative TERM 907 2484632 - 2484614 - g 74 -2.5 -5.33405 | gap 1, overlap 2484618 CTTATTAAATAAAAA GGT-AGAT GAGT ATCTCACC CTTGACAATAAATTA SSO2729 2484459 - 2485367 + | hypothetical protein SSO2730 2486491 - 2485358 - | hypothetical protein TERM 908 2486485 - 2486533 + g 72 -7.5 -3.73775 | opp_overlap 2486489 2486492 2486493, overlap 2486493 2486493 GTCTCCCGTAAATGA ACCACAATTTACTGGTACCAGTA ATT TACTGGTACCAGTAATTTAAAGA TTTAATGAAAGTACG TERM 909 2486529 - 2486489 - G 100 -17.9 -2.89569 | opp_overlap 2486485 2486493 2486493, overlap 2486492 2486493 CCCGTAAATGAACCA CAATTTACTGGTACCAGTA ATT TACTGGTACCAGTAATTTA AAGATTTAATGAAAG TERM 910 2486526 - 2486492 - R 100 -17.4 -3.58914 | opp_overlap 2486485 2486493 2486493, overlap 2486489 2486493 GTAAATGAACCACAA TTTACTGGTACCAGTA ATT TACTGGTACCAGTAAT TTAAAGATTTAATGA TERM 911 2486493 - 2486525 + r 100 -20.9 -3.64682 | opp_overlap 2486493 2486492 2486489, overlap 2486493 2486485 TAAATGAACCACAAT TTACTGGTACCAGTA ATT TACTGGTACCAGTAA TTTAAAGATTTAATG TERM 912 2486525 - 2486493 - R 100 -20.9 -2.74625 | opp_overlap 2486493 2486485 2486493, overlap 2486492 2486489 TAAATGAACCACAAT TTACTGGTACCAGTA ATT TACTGGTACCAGTAA TTTAAAGATTTAATG speB-2 2487444 - 2486527 - | agmatinase SpeB TERM 913 2487392 - 2487378 - G 71 -7.2 -3.86015 | CATTTTTTTCACAAA TTGGTA ACC TACCAA AGGTAGAAATTTGTG TERM 914 2488117 - 2488131 + r 88 -11.4 -3.26649 | opp_overlap 2488107 AATGAGTTTCGTTCG GGGTCG GAA CGACCC TTAGTGTGGAGCTCT SSO2733 2489146 - 2488487 - | hypothetical protein SSO2734 2489489 - 2489184 - | hypothetical protein SSO11020 2489770 - 2489486 - | hypothetical protein SSO2735 2489890 - 2490564 + | hypothetical protein SSO2736 2491108 - 2490548 - | hypothetical protein TERM 915 2490905 - 2490919 + g 76 -6.4 -4.40358 | TTTTAATATTTTCAT TACGTC GAT GGCGTA TTTTATGCACTCCCT SSO2737 2492459 - 2491146 - | hypothetical protein TERM 916 2491319 - 2491305 - G 86 -10 -4.13246 | TAGCTTATACACAAA CAACCC CAT GGGTTG AGTGCCGGCTGAATT TERM 917 2491463 - 2491478 + g 70 -2.6 -5.09895 | gap 1, opp_overlap 2491463, overlap 2491466 TCTCCCCATTGAAAC CAGCCTT TTG AAGG-TG TTTTTTCAGTAACTC abfD-2 2492589 - 2494097 + | 4-hydroxybutyryl-CoA dehydratase (abfD-2) SSO2740 2495101 - 2494349 - | hypothetical protein TERM 918 2495035 - 2495049 + g 73 -10 -2.57564 | overlap 2495034 AAAGTATATCGATAG CCTCCT TTA AGGAGG ATTCTGGGAAAATAG SSO2741 2495668 - 2495135 - | hypothetical protein SSO2742 2495767 - 2497512 + | hypothetical protein TERM 919 2498131 - 2498121 - g 78 -4 -5.28176 | opp_overlap 2498121 TTGACGTAGAAAAAA TATC CAG GATA TTAAGTATTGGTGGA SSO2743 2497535 - 2498728 + | hypothetical protein SSO2744 2498716 - 2499501 + | hypothetical protein SSO2745 2499842 - 2499504 - | hypothetical protein SSO2746 2501321 - 2500050 - | hypothetical protein TERM 920 2501888 - 2501865 - g 72 -3.8 -4.9448 | overlap 2501867 ACGTAGGAAATAAAA GAGCACCA TTAACGGT TGGTGCAC ATCCATACTTTATTA SSO2747 2501459 - 2502247 + | hypothetical protein SSO2748 2502319 - 2503128 + | hypothetical protein SSO2749 2504163 - 2503123 - | hypothetical protein SSO2750 2505747 - 2504398 - | hypothetical protein TERM 921 2505329 - 2505349 + g 71 -6.9 -3.96841 | opp_overlap 2505333, overlap 2505324 2505332 2505333 TCATAGCTCAAACAA TAAACCCTT AGA AAGGGATTA TTATATTTATTGCAA TERM 922 2505345 - 2505333 - G 84 -7.7 -4.57581 | opp_overlap 2505332 2505329 2505324 2505333 AGCTCAAACAATAAA CCCTT AGA AAGGG ATTATTATATTTATT TERM 923 2505540 - 2505554 + g 78 -3.6 -5.39905 | opp_overlap 2505541, overlap 2505541 CTAAGTCTAAGTAAA TTGATA AGT TATCAG TTTTTGTTATTTCCT SSO2751 2506250 - 2505750 - | hypothetical protein SSO2752 2507654 - 2506488 - | hypothetical protein SSO2753 2508253 - 2507711 - | hypothetical protein SSO2754 2510007 - 2508253 - | hypothetical protein SSO2755 2510372 - 2511685 + | glycosyltransferase porB-2 2512588 - 2511689 - | pyruvate ferredoxin oxidoreductase subunit beta TERM 924 2512363 - 2512347 - GT 75 -8 -3.6502 | overlap 2512350 TACGCCCTAGCCAAA CCAGCT GCTGT AGCTGG ACCAGCTGCAAAAGC porA-2 2513759 - 2512557 - | pyruvate synthase alpha chain (Pyruvic-ferredoxin oxidoreductase alpha chain) (porA-2) porD-2 2514040 - 2513756 - | pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-2) porG-2 2514560 - 2514006 - | pyruvate synthase gamma chain (Pyruvic-ferredoxin oxidoreductase gamma chain) (porG-2) SSO2759 2515853 - 2514624 - | molybdopterin oxidoreductase, iron-sulfur binding subunit cutA-5 2518407 - 2516119 - | carbon monoxide dehydrogenase, large chain (cutA-5) acd-5 2519600 - 2518404 - | Acyl-CoA dehydrogenase (acd-5) TERM 925 2519204 - 2519170 - G 74 -10 -2.62184 | opp_overlap 2519182 2519197, overlap 2519185 2519201 2519203 GTTGTCTTTATACCA GCTACATCTGAACCAG CTA CTGGTTCAGTAACAGC AAATGCTGCTACTTT TERM 926 2519197 - 2519216 + g 70 -6.4 -4.09108 | opp_overlap 2519185 2519170 2519201 2519203 CCAGCTACTGGTTCA GTAACAGC AAAT GCTGCTAC TTTATCTCCATTGGC etfA 2520489 - 2519626 - | electron transfer flavoprotein, subunit alpha (etfA) etfB 2521219 - 2520491 - | electron transfer flavoprotein subunit beta EtfB TERM 927 2521298 - 2521281 - H 72 -5.7 -4.42639 | ATATTTTAAGCAAAA CTTTTTA GCGT TAAAAAG AAATATAATGTGAGA SSO2764 2521316 - 2523199 + | hypothetical protein trxB-2 2523283 - 2524260 + | thioredoxin reductase (trxB-2) TERM 928 2524861 - 2524851 - g 73 -2.4 -5.37345 | GGTAAGGATAAAAAA GGGC TAT GCCA GTAAGTTAGAGGCGA SSO2766 2524288 - 2525646 + | hypothetical protein SSO2768 2526242 - 2525637 - | hypothetical protein TERM 929 2527397 - 2527385 - g 70 -2.7 -5.12785 | TAAGGAAAAAATAAA GAAAC TGG ATTTC GTAATCGAAGAACCT SSO2769 2526654 - 2527580 + | hypothetical protein TERM 930 2528413 - 2528425 + G 72 -7.7 -3.7829 | opp_overlap 2528395 TTTGATAAACGTTGT TCTCC AAG GGAGA TTTGATGGGTATCCT codA 2527607 - 2528839 + | cytosine deaminase (codA) SSO2772 2528877 - 2529503 + | hypothetical protein hpcE-2 2530423 - 2529509 - | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2) TERM 931 2530411 - 2530435 + g 70 -5.7 -4.50988 | opp_overlap 2530411 2530409 TTGGAGAGAATAATA GGATTTTAACC ATA GGTAAAACTCC TTATTTTTAATATAA ilvB-4 2532050 - 2530455 - | acetolactate synthase large subunit IlvB SSO2775 2533125 - 2532076 - | glycosyltransferase zfx-like1 2533412 - 2533143 - | ferredoxin like protein (zfx-like1) SSO2776 2534632 - 2533409 - | electron transfert oxidoreductase SSO2777 2535008 - 2534652 - | hypothetical protein SSO2778 2535455 - 2535036 - | hypothetical protein SSO2779 2536368 - 2535490 - | dehydrogenase TERM 932 2535732 - 2535761 + g 76 -9.5 -3.37537 | opp_overlap 2535737, overlap 2535721 TGTACTTCTTACCTA TATTAGCTAAGAA CTCA TTCCTAGCTAATA TTCCATTTTCCAATG SSO2780 2537808 - 2537368 - | hypothetical protein SSO2781 2538310 - 2537786 - | hypothetical protein SSO2782 2539307 - 2540431 + | transposase ISC1316 SSO11133 2540537 - 2540782 + | hypothetical protein SSO2783 2540775 - 2541194 + | hypothetical protein SSO2784 2541843 - 2541232 - | third ORF in transposon ISC1225 SSO11138 2542030 - 2541830 - | second ORF in transposon ISC1225 SSO11139 2542256 - 2542071 - | transposon ISC1225 Orf1 TERM 933 2542574 - 2542595 + r 74 -8.7 -3.27298 | opp_overlap 2542566 2542567, overlap 2542575 ATATCAAGGTGAGCT ACTCCCTCA TAAA TGAGGGAGC TTCCTACTTCACAGC TERM 934 2542575 - 2542594 + r 89 -12.2 -2.56164 | opp_overlap 2542566 2542567, overlap 2542574 TATCAAGGTGAGCTA CTCCCTCA TAAA TGAGGGAG CTTCCTACTTCACAG SSO2785 2543798 - 2542599 - | transposase ISC1316 TERM 935 2544319 - 2544299 - R 70 -8.4 -3.15861 | TATGATTTGTACTAA GTGAACAA AATTG TTGTTCAC CCTCACCAAAATCTT SSO2786 2545046 - 2544429 - | hypothetical protein SSO2787 2545736 - 2545152 - | hypothetical protein SSO2788 2546260 - 2546652 + | hypothetical protein TERM 936 2546955 - 2546921 - T 73 -4.3 -5.05116 | gap 1, opp_overlap 2546921 TGATAAAGAAGAAAA CAAGCTTCACCCCTTC AAAG GCCAGGGT-AAGCTTG TTGGGTCGCTGAGTA acpA 2548710 - 2547175 - | acid phosphatase AcpA TERM 937 2547949 - 2547961 + g 74 -4.1 -5.1287 | opp_overlap 2547941, overlap 2547950 GACCCAACTTACCGC TGGTA AAC TACCG TTTTTTAAATCTCCA SSO2790 2549214 - 2548795 - | hypothetical protein SSO2791 2549789 - 2549205 - | hypothetical protein SSO2792 2551257 - 2549761 - | hypothetical protein SSO2793 2551907 - 2551257 - | hypothetical protein SSO2794 2552817 - 2551936 - | oxydoreductase, putative SSO2795 2557069 - 2552789 - | oxydoreductase, putative SSO2796 2557974 - 2557150 - | hypothetical protein SSO2797 2558085 - 2559161 + | hypothetical protein TERM 938 2559515 - 2559495 - g 76 -4.7 -4.9138 | AGTAGCGAAACAAAA GAAGGGATT TGC AATCACTCC ACGTGGTCTGGTATT SSO2798 2559325 - 2559954 + | hypothetical protein SSO2799 2559951 - 2560850 + | hypothetical protein adh-12 2561834 - 2560839 - | zinc-containing alcohol dehydrogenase cbsA 2561972 - 2563411 + | cytochrome b558/566, subunit A (cbsA) cbsB 2563408 - 2564352 + | cytochrome b558/566, subunit B (cbsB) soxL-2 2564389 - 2565357 + | Rieske iron-sulfur protein-1 (soxL-2) TERM 939 2566623 - 2566609 - g 71 -7.1 -3.95456 | AAAGGGAATATTAAA GGGAC AATAG GTCCC ATAACAGCATTAGCA soxC-like 2565391 - 2567019 + | quinol oxidase (SoxABC), cytochrome B subunit, putative (soxC-like) SSO11196 2567031 - 2567324 + | hypothetical protein SSO2807 2568562 - 2568206 - | hypothetical protein alkK-3 2568807 - 2570330 + | medium-chain-fatty-acid--CoA ligase (alkK-3) SSO2810 2570374 - 2571330 + | hydrolase, acetamydase/formamidase related, putative SSO2811 2571427 - 2572662 + | transposase ISC1316 SSO2812 2573759 - 2572959 - | hypothetical protein SSO2813 2574533 - 2574051 - | hypothetical protein SSO2814 2574959 - 2574657 - | hypothetical protein SSO2815 2575303 - 2577201 + | 2-oxoacid--ferredoxin oxidoreductase, alpha chain SSO2816 2577155 - 2578105 + | 2-oxoglutarate ferredoxin oxidoreductase subunit beta TERM 940 2578181 - 2578166 - f 77 -7.6 -4.15044 | opp_overlap 2578155 2578154 2578162 TCTTGGTTTAATAAA CCCTTT CAAC AAAGGG ACTAGTTTATACTTT etfAB/fixAB 2578274 - 2580106 + | electron transfer flavoprotein alpha and beta-subunit (etfAB/fixAB) fixC 2580109 - 2581296 + | FIXC protein homolog (fixC) zfx-like2 2581293 - 2581580 + | ferredoxin like protein (zfx-like2) ppsA-2 2582515 - 2581577 - | phosphoenolpyruvate synthase (ppsA-2) fdhD 2583350 - 2582577 - | FDHD protein homolog (fdhD) SSO2822 2583681 - 2583325 - | hypothetical protein fdhF-2 2586584 - 2583645 - | formate dehydrogenase Alpha subunit (fdhF-2) TERM 941 2583770 - 2583748 - GR 73 -7.8 -3.6682 | opp_overlap 2583747 CTCCAGTTATCTAAA GGTAAAGG ACTCTCA CCTTTACC CTCCTCTATTTTCTC SSO2825 2587335 - 2586859 - | hypothetical protein SSO2826 2587951 - 2587322 - | hypothetical protein TERM 942 2587512 - 2587523 + g 73 -5.8 -4.52589 | GCTATTAAAACATTT GGCT CTTT AGCC TTTTCTATCGGCAAA TERM 943 2588260 - 2588210 - H 74 -5.8 -4.57837 | gap 3, overlap 2588199 ACAGCCTCTGAAAAA GGTTTATGTGCGAGGGTTA-CTAGA TCCG TCTTGCTAACCCTCACA-A-AAACC TCACACATGAGTTTT TERM 944 2588260 - 2588271 + H 73 -4.4 -4.99035 | opp_overlap 2588260 AACCCTCACAAAAAC CTCA CACA TGAG TTTTTCTGTCAGTCC SSO2827 2588673 - 2589065 + | hypothetical protein SSO2828 2589493 - 2589077 - | hypothetical protein SSO2829 2590462 - 2589587 - | hypothetical protein TERM 945 2589731 - 2589744 + g 86 -5.3 -5.26875 | CCCAGTAAAGTAGAT TTCAG GTAA CTGAA TTTTTTCCTTAGAGA TERM 946 2590591 - 2590579 - R 74 -4.1 -5.20783 | AGGTAAACATAAAAA TAGTG TAA CACCA TACTTATATAGAATC SSO2830 2592271 - 2590634 - | hypothetical protein TERM 947 2591342 - 2591322 - G 74 -4.7 -4.78077 | opp_overlap 2591322, overlap 2591323 2591326 TTTAAGTAAAACAAA CTTAGGTCT AAA AGACCAAAA CTTAGTAAGTATACC SSO2831 2594226 - 2592469 - | AAA ATPase family protein TERM 948 2593887 - 2593904 + g 79 -8.5 -4.05193 | opp_overlap 2593886 CCCAGCCCAATTTAT TCGCTAA AGCC TTAGCGA TTGTTGTCTTTCCTG TERM 949 2594545 - 2594560 + H 79 -3.4 -5.52079 | AGATCATGATATACT TATTTT TGGT AAAATA TTTTTCTTTTAATAT SSO2832 2594590 - 2595291 + | hypothetical protein SSO2833 2595288 - 2595671 + | hypothetical protein SSO2834 2596140 - 2597105 + | transposase ISC1439 SSO2835 2597333 - 2598418 + | ABC transporter, binding protein (branched chain amino acid) SSO2836 2598439 - 2599185 + | ABC transporter, ATP binding protein (branched chain amino acid) SSO2838 2599192 - 2599902 + | ABC transporter, ATP binding protein (branched chain amino acid) SSO2839 2599909 - 2600826 + | ABC transporter, permease (branched chain amino acid) TERM 950 2601094 - 2601105 + G 76 -5.8 -4.56736 | opp_overlap 2601094 TTGAACAACCATTAA TGGC TCTC GCCA TTTTAATTCTTACCT TERM 951 2601726 - 2601704 - g 78 -10 -3.31461 | opp_overlap 2601704 2601703, overlap 2601722 TATCGATTTGTATAA GCAGACAATA GGA TATTATCTGC ATTTCGATGCAGTAT SSO2841 2600826 - 2601863 + | ABC transporter, permease (branched chain amino acid) TERM 952 2602228 - 2602186 - f 100 -11.5 -4.24397 | gap 1, overlap 2602175 2602187 ACAATTGAAGAGAAA GC-CCTCTACAACCTCACTC AGTG AAGTGAGGTCATAGAAGAGC TTAAACATCTCAACG TERM 953 2602226 - 2602187 - f 87 -11.6 -3.13553 | overlap 2602175 2602186 CAATTGAAGAGAAAG CCCTCTACAACCTCACTC AGTG AAGTGAGGTCATAGAAGA GCTTAAACATCTCAA SSO2842 2602252 - 2602821 + | partial transposase ISC1250 TERM 954 2603441 - 2603431 - g 82 -6.8 -5.03945 | opp_overlap 2603431 2603432, overlap 2603432 CAAGAATGATAAAAA GCTC GCT GAGC TAGTTGTAAGTATGG SSO2843 2603270 - 2603686 + | transposon ISC1190 Orf1 SSO11277 2603721 - 2603882 + | second ORF in transposon ISC1190 SSO11280 2603913 - 2604071 + | third ORF in transposon ISC1190 SSO11281 2604098 - 2604388 + | Last part of transposase in ISC1250 SSO2845 2605620 - 2604655 - | transposase ISC1439 SSO2846 2606196 - 2605843 - | hypothetical protein SSO2847 2608117 - 2606453 - | sugar-binding periplasmic protein TERM 955 2608445 - 2608432 - g 74 -8.1 -3.66178 | TTGCTGAACTCTAAA CCGAC TTTT GTCGG GCTTGAAACTTACAG SSO2848 2608309 - 2609169 + | ABC transporter, permease (glucose) SSO2849 2609154 - 2610017 + | ABC transporter, permease (glucose) SSO2850 2610021 - 2611082 + | ABC transporter, ATP binding protein (glucose) TERM 956 2611091 - 2611079 - T 72 -2.7 -5.40474 | AGTCTTTGAAAAAAA TTAGA ATC CCTAA AAAAAGAGCTTTCCC SSO2852 2612461 - 2611121 - | proline/betaine transporter, putative TERM 957 2612454 - 2612468 + g 73 -5.6 -4.70626 | CATGTAAACTTTTCT GGCTCC ATT GAAGCC TTTTTAAACTTATTG SSO2853 2612718 - 2613491 + | permease, putative TERM 958 2613560 - 2613585 + T 72 -4.9 -4.86001 | AACATAACGTGTAGA TTCAGATTA AAGGGAGA TAATCTGAA TTTTTATCACGTGGT TERM 959 2613633 - 2613606 - T 100 -15.6 -3.2963 | ATCACGTGGTTAGAA CGGTGTGCAGAG TGTC CTCTGCACGCCG AGGAAGTTAGAGAAG SSO11307 2613786 - 2613640 - | second ORF in transposon ISC1439 SSO2855 2614686 - 2613811 - | transposon ISC1439 Orf1 SSO2856 2614967 - 2615377 + | hypothetical protein SSO2857 2615796 - 2615380 - | hypothetical protein SSO2858 2616553 - 2615996 - | hypothetical protein TERM 960 2616497 - 2616485 - GR 77 -7.7 -4.05512 | ATAAGAAAAAAGTAA TCCCT TAT AGGGA TCTAGCCCCTCTACT SSO2860 2617922 - 2616522 - | selenium-binding protein SSO2861 2618415 - 2617972 - | hypothetical protein acsA-9 2620490 - 2618490 - | acetyl-CoA synthetase TERM 961 2620614 - 2620600 - g 86 -4.2 -5.60689 | overlap 2620611 TGACAGAACAAAAAA GGGC AAATCCA GCCC CCTTAGGACTTTCTG SSO2864 2620566 - 2621144 + | hypothetical protein SSO2865 2621488 - 2621174 - | hypothetical protein SSO2866 2621887 - 2621546 - | hypothetical protein SSO2867 2622237 - 2621884 - | hypothetical protein SSO2868 2623072 - 2622248 - | hypothetical protein TERM 962 2622811 - 2622831 + g 79 -11.1 -3.06796 | opp_overlap 2622816 GCATTGTATAGCTTA GCACAGCTG ACT CAGCTGGGC TTACATAAAGTAAAC SSO2869 2623145 - 2624443 + | NAD-dependent malic enzyme (malate oxidoreductase) SSO2870 2624431 - 2624895 + | hypothetical protein hdb-2 2626015 - 2624903 - | 3-hydroxyacyl-CoA dehydrogenase (hdb-2) TERM 963 2625365 - 2625383 + g 70 -8.9 -3.03124 | overlap 2625367 CAATTTATATCTAGC TACTGCG TCTAT CGCAGTA TATTCACAAATCCCC SSO2872 2626558 - 2626022 - | hypothetical protein acaB-9 2627742 - 2626555 - | acetyl-CoA acetyltransferase alkK-4 2629379 - 2627766 - | medium-chain-fatty-acid--CoA ligase (alkK-4) acd-6 2630616 - 2629414 - | Acyl-CoA dehydrogenase (acd-6) TERM 964 2630474 - 2630484 + g 70 -5.4 -4.42235 | TCCAATACTTCCTTT GGTA CTG TACC TTCTTTTTCACCCTT adh-13 2631732 - 2630800 - | zinc-containing alcohol dehydrogenase SSO2879 2632567 - 2631764 - | hypothetical protein SSO2880 2632768 - 2633439 + | hypothetical protein SSO2881 2635001 - 2633493 - | hypothetical protein TERM 965 2634917 - 2634941 + g 75 -7.2 -4.18674 | CAACTTTCCTAAGGG GGTAAGGC GCTACTATA GCCTTACC TTCTTTATCTGTGGA TERM 966 2635467 - 2635496 + H 70 -8.1 -3.11634 | opp_overlap 2635473 2635476 CCCTAATCGGTAGAC CCAAAATCATTTT ACAA AAAATAATTTTGG TTGGGTAATATCAGA SSO11362 2635575 - 2635796 + | transposon ISC1225 Orf1 SSO2882 2635873 - 2636832 + | transposase ISC1234 SSO2883 2637008 - 2637898 + | second ORF in transposon ISC1225 pcaC 2638554 - 2638135 - | 4-carboxymucolactone decarboxylase (pcaC) SSO2885 2639527 - 2638613 - | oxidoreductase SSO2886 2639601 - 2640188 + | hypothetical protein SSO11387 2641086 - 2640862 - | hypothetical protein TERM 967 2641272 - 2641291 + H 71 -7.8 -3.53224 | opp_overlap 2641272 2641283 GACGGGGGTTCAAAG GGGGCGGA AAAC TTCGCCTC TTTGAGACGGAGATG TERM 968 2641303 - 2641283 - H 77 -7.5 -4.0896 | opp_overlap 2641272, overlap 2641272 AAAGGGGGCGGAAAA CTTCGCCTC TTT GAGACGGAG ATGGATAGCCCCCTT TERM 969 2641470 - 2641484 + G 84 -11.4 -3.20382 | GTTAAGTACCATGCG GGGTGG GAG CCACCC TTAGTGCCTGTGGAG SSO2887 2641293 - 2641598 + | hypothetical protein TERM 970 2641575 - 2641604 + F 70 -8.1 -3.11634 | opp_overlap 2641581 2641584 TCCTTTACGGTAGAC CCAAAATCATTTT ACAA AAAATAATTTTGG TTGGGTAATATCAGA TERM 971 2641732 - 2641691 - gf 78 -9.5 -3.1886 | opp_overlap 2641691 2641700, overlap 2641682 2641718 ATTTAAGGTGAGGAA CCCGGTATTATCACGTGGT GAAG ACAAGGTGATAACACCTGG TCTTCCCCACCAAAA SSO11389 2641647 - 2641901 + | transposon ISC1225 Orf1 SSO2888 2641841 - 2642149 + | second ORF in transposon ISC1225 SSO2889 2642034 - 2642774 + | third ORF in transposon ISC1225 SSO2890 2642979 - 2643782 + | hypothetical protein SSO2891 2643850 - 2644194 + | hypothetical protein SSO2892 2645294 - 2644191 - | oxidoreductase SSO2893 2646066 - 2645761 - | second ORF in transposon ISC1190 SSO2894 2646703 - 2645954 - | transposon ISC1190 Orf1 TERM 972 2646415 - 2646425 + gr 85 -6.8 -5.03945 | opp_overlap 2646412 2646415, overlap 2646412 CCATACTTACAACTA GCTC AGC GAGC TTTTTATCATTCTTG TERM 973 2646812 - 2646838 + r 88 -11.7 -2.88375 | overlap 2646809 ACGGCCTCCACCCCA GTCAGATCTGT AATAC GCAGATCTGAC TAATATGTTTTATAT SSO2896 2649216 - 2647129 - | copper-transporting ATPase SSO2897 2649268 - 2649651 + | hypothetical protein SSO11412 2649690 - 2649938 + | copper binding protein SSO11417 2650750 - 2650496 - | second ORF in transposon ISC774 SSO2898 2651189 - 2650761 - | transposon ISC774 Orf1 TERM 974 2651248 - 2651214 - R 71 -5.2 -4.59773 | opp_overlap 2651205 2651214 TTCCACGCGCAAAAA CAATTTGCACAATTTA TTT TAAATTAAGAAAATTG TTGTCCACACTCTAG SSO2899 2652343 - 2651810 - | hypothetical protein SSO2900 2652595 - 2653731 + | glycosyltransferase SSO2901 2653718 - 2654299 + | hypothetical protein SSO2902 2654766 - 2654425 - | hypothetical protein SSO2903 2655502 - 2654942 - | hypothetical protein SSO2904 2656164 - 2655484 - | hypothetical protein crtB 2656970 - 2656137 - | phytoene synthetase (crtB) TERM 975 2657245 - 2657233 - g 78 -5.5 -4.94972 | CATCATAAGGAAAAA CAAGC TGA GCTCG AAAAAAATGACCTAT crtZ 2657101 - 2657556 + | Beta carotene hydroxylase (crtZ) crtI 2657556 - 2658920 + | phytoene dehydrogenase (desaturase) (crtI) TERM 976 2659054 - 2659027 - T 84 -10.8 -3.05498 | gap 1, opp_overlap 2659027, overlap 2659033 CATTCTAGATATATA CCTAAATTAGACG AAT CGTCTAA-TTAGG TTACTTGTAACGAGT TERM 977 2659027 - 2659054 + T 87 -10.8 -3.44325 | gap 1, opp_overlap 2659027 2659033 CATTCTAGATATATA CCTAAATTAGACG AAT CGTCTAA-TTAGG TTACTTGTAACGAGT TERM 978 2659049 - 2659033 - T 82 -9.5 -3.75937 | opp_overlap 2659027, overlap 2659027 AGATATATACCTAAA TTAGACG AAT CGTCTAA TTAGGTTACTTGTAA cysG 2659944 - 2659249 - | uroporphyrin-III C-methyltransferase cysI 2661829 - 2659937 - | sulfite reductase hemoprotein beta component (cysI) cysH 2662545 - 2661826 - | phosphoadenosine phosphosulfate reductase sat 2662646 - 2663866 + | sulfate adenylyltransferase SSO2913 2663867 - 2664172 + | hypothetical protein SSO2914 2664169 - 2665023 + | hypothetical protein SSO2915 2666206 - 2665268 - | hypothetical protein SSO2916 2666239 - 2666625 + | transposon ISC1058 Orf1 SSO2917 2667238 - 2666795 - | second ORF in transposon ISC1212 SSO2918 2667708 - 2667322 - | transposon ISC1212 Orf1 SSO11456 2667275 - 2667463 + | second ORF in transposon ISC1058 SSO2919 2667810 - 2668310 + | hypothetical protein TERM 979 2668467 - 2668450 - f 73 -4.3 -5.07275 | CTATATATAGAAAAA TTAATAA TCCA TTATTAA AATTAATTATCTATG SSO2921 2668480 - 2669973 + | hypothetical protein SSO2922 2670385 - 2671350 + | transposase ISC1439 TERM 980 2671357 - 2671384 + F 100 -21.4 -3.2963 | CTTCTCTAACTTCCT CGGCGTGCAGAG GACA CTCTGCACGCCG TTCTAACCACGTGAT TERM 981 2671430 - 2671405 - f 72 -4.9 -4.86001 | ACCACGTGATAAAAA TTCAGATTA TCTCCCTT TAATCTGAA TCTACACGTTATGTT TERM 982 2672632 - 2672618 - g 73 -8.6 -3.44527 | CACCCACGACCACAA GCTCTA CGC TAGAGC CATGCCGGTCTCCAG SSO2924 2672370 - 2672780 + | partial ORF in transposase ISC1217 TERM 983 2672920 - 2672892 - T 93 -11 -4.09827 | GAGAATACAACTAAA CCGGCGAAGTTC AACCG GGACTTCGCCAG GTCTGCCCTCAAGAT TERM 984 2672968 - 2672983 + T 72 -9 -2.60244 | opp_overlap 2672976, overlap 2672972 CTAAAATACTTTTCC CTGAGG AACT CCTCAG TGCCTTGCTTAAGGC SSO2925 2673608 - 2673081 - | second ORF in transposon ISC1048 SSO2927 2674066 - 2673614 - | transposon ISC1048 Orf1 SSO2928 2674428 - 2674727 + | transposon ISC1234 Orf1 SSO2929 2674752 - 2675360 + | second ORF in transposon ISC1234 SSO2930 2675378 - 2675872 + | transposon ISC1048 Orf1 SSO2931 2675835 - 2676362 + | second ORF in transposon ISC1048 SSO2933 2677087 - 2676674 - | partial transposase ISC1078 TERM 985 2676865 - 2676884 + g 76 -9.3 -3.30969 | TCTTTTCTAAGATTC GGACGAG CTTTTC CTCGTCC TTCAGTTTCGTGGGT hyuB-3 2678730 - 2677189 - | N-methylhydantoinase B (hyuB-3) hyuA-3 2680679 - 2678727 - | N-methylhydantoinase A (hyuA-3) SSO2937 2681011 - 2680676 - | hypothetical protein SSO2938 2682670 - 2681354 - | permease (proline/betaine) TERM 986 2681627 - 2681606 - G 82 -8 -4.46854 | opp_overlap 2681623 CGATTCAACAAGAAA TGCAGGCG TTATTG CACCTGCA AAGTAGTATATTAAT maiA 2684917 - 2684189 - | maleate cis-trans isomerase, (maiA) TERM 987 2684265 - 2684280 + g 72 -7.6 -3.75506 | opp_overlap 2684264 2684265 AGCGTTTCCCATAAT GTAGCA CTAT TGCTAC TTATTACTGGCTTCT TERM 988 2685145 - 2685165 + G 72 -8.3 -3.47078 | opp_overlap 2685136 AGGACAGTGGATTAT CCCCATTAG ACA TTGATGGGG TTATACTATCACATA SSO2940 2684976 - 2685683 + | hypothetical protein hpcE-3 2687079 - 2686213 - | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase TERM 989 2687995 - 2687982 - g 86 -6.7 -5.1101 | TGAGCACTTAAAAAA TCCCA CAGT TGGGA GAGGAGTTCTATCTG cutA-6 2687185 - 2689239 + | carbon monoxide dehydrogenase, large chain (cutA-6) TERM 990 2689732 - 2689716 - g 72 -3.7 -4.94902 | opp_overlap 2689727, overlap 2689721 2689722 2689725 GAATTATTAGAAAAA GAAAAGT AAT ACTTTAC GCTAGAGTATCATCA TERM 991 2689732 - 2689721 - g 74 -3 -5.3658 | opp_overlap 2689727, overlap 2689716 2689722 2689725 ATTAGAAAAAGAAAA GTAA TACT TTAC GCTAGAGTATCATCA TERM 992 2689978 - 2689964 - g 77 -10 -3.28708 | overlap 2689974 GAAATCCTAGAGGAA GTGTGC AAA GCACAC AACTGTGAAATAGTA SSO2943 2689556 - 2690140 + | transposon ISC1778 Orf1 TERM 993 2690183 - 2690159 - g 79 -10.8 -3.09671 | overlap 2690163 ATTTGAACCGGAAGA GGAATACGTG TACTT CACGTACTCC ATCAAGAACGACAAG SSO2944 2690118 - 2691392 + | second ORF in transposon ISC1778 SSO2946 2691718 - 2692443 + | hypothetical protein TERM 994 2692501 - 2692475 - T 88 -11.7 -2.81462 | overlap 2692472 ATAAAACATATATTA GTCAGATCTGC GTAAT ACAGATCTGAC CGGAGTGGAGGCCGT SSO2947 2693479 - 2692952 - | second ORF in transposon ISC1048 SSO2949 2693937 - 2693485 - | transposon ISC1048 Orf1 SSO2951 2695070 - 2693997 - | transposase ISC1229 TERM 995 2696017 - 2696030 + GH 70 -8.1 -3.06831 | opp_overlap 2696026, overlap 2696007 2696029 CTCACGTATTCTCAA GGGAG AGAA CTCCC TTAAATGAGGCTTAC SSO2950 2694984 - 2696084 + | hypothetical protein SSO2952 2696579 - 2696983 + | hypothetical protein TERM 996 2697365 - 2697353 - f 70 -4.1 -5.07652 | TCTCTTAAAATAAAA CAGAA GAT TTCCG AAGTACACTAAAAAT SSO2953 2697813 - 2698394 + | hypothetical protein dcD-2 2699365 - 2698865 - | deoxycytidine triphosphate deaminase (dcD-2) SSO2955 2700587 - 2699421 - | hypothetical protein TERM 997 2699758 - 2699740 - G 84 -7.5 -4.58859 | AAATAGAATAAGAAA CCACTTA GTATA TAAGTGG AGACTATCTTAATGG TERM 998 2700705 - 2700679 - R 88 -11.7 -2.88375 | overlap 2700676 ATATAAAACATATTA GTCAGATCTGC GTAAT ACAGATCTGAC TGGGGGTTGAGGCCG SSO11549 2701235 - 2701002 - | third ORF in transposon ISC1212 SSO2956 2701960 - 2701376 - | transposon ISC1212 Orf1 SSO11553 2702086 - 2702340 + | ORF in partial transposon ISC774 SSO2957 2702681 - 2703064 + | transposon ISC1395 Orf1 SSO2958 2703096 - 2703503 + | second ORF in transposon ISC1395 SSO2959 2703472 - 2703819 + | hypothetical protein TERM 999 2703916 - 2703938 + T 71 -8 -3.35485 | opp_overlap 2703920, overlap 2703915 ATGTATTCAAATTTT TAAATTTTTA TTA TAAAAATTTA CTTTATTTATCGTGT SSO2960 2704938 - 2703907 - | NADH dehydrogenase ilvB-5 2706603 - 2704945 - | pyruvate dehydrogenase TERM 1000 2705531 - 2705514 - G 73 -7.1 -4.07568 | overlap 2705525 CTCCTTCGGTGAAAA CTTTTGA TAAT TCAAAAG CCACTCTTTGAGGCT SSO11571 2707325 - 2707149 - | hypothetical protein SSO2963 2707995 - 2707414 - | hypothetical protein SSO2964 2708082 - 2708855 + | hypothetical protein SSO11575 2709121 - 2708912 - | hypothetical protein TERM 1001 2709451 - 2709469 + G 70 -5.4 -4.36343 | overlap 2709442 ATTGCGTTGACTGAG TTAATACT TAT AGTGTTAA TTTCTTACTTCATTG SSO2965 2709181 - 2710980 + | Na(+)/H(+) antiporter, putative SSO2966 2711817 - 2711059 - | hypothetical protein SSO2967 2712287 - 2711847 - | hypothetical protein soxI-like 2712930 - 2712484 - | quinol oxidase-2, putative subunit (SoxI-like) (soxI-like) soxH 2713372 - 2712932 - | quinol oxidase-2, subunit II (soxH) soxG 2714999 - 2713350 - | quinol oxidase-2, cytochrome b (soxG) TERM 1002 2713964 - 2713950 - GR 79 -10 -2.96007 | opp_overlap 2713946, overlap 2713947 AATGAAAAGGAAGTA CCAGTC AGG GACTGG TGGAGTTTGCGCTGC soxF 2715642 - 2714884 - | quinol oxidase-2, Rieske iron-sulfur protein-2 (soxF) soxE 2715783 - 2716376 + | quinol oxidase-2, sulfocyanin (blue copper protein) (soxE) TERM 1003 2718248 - 2718219 - g 79 -7.2 -4.41616 | opp_overlap 2718241, overlap 2718221 AGTGGTTTAAACAAA TACCTCCACCAA TGCAAC TTGATGGAGGTT CACCAGTTTCCGCTG TERM 1004 2718246 - 2718221 - g 84 -9.8 -3.81557 | opp_overlap 2718241, overlap 2718219 TGGTTTAAACAAATA CCTCCACCAA TGCAAC TTGATGGAGG TTCACCAGTTTCCGC soxM 2716493 - 2718865 + | quinol oxidase-2, subunit I/III, cytochrome aa3 (soxM) SSO2975 2718875 - 2719477 + | hypothetical protein SSO2976 2719813 - 2720220 + | hypothetical protein SSO2977 2721179 - 2720217 - | hypothetical protein eiF2B 2722325 - 2721225 - | translation initiation factor IF-2B subunit alpha SSO2979 2722378 - 2723340 + | hypothetical protein SSO2980 2723736 - 2723326 - | hypothetical protein SSO2981 2724787 - 2723876 - | epimerase, putative SSO11614 2724868 - 2725080 + | hypothetical protein SSO2982 2725126 - 2726088 + | hypothetical protein SSO2983 2727280 - 2726051 - | hypothetical protein TERM 1005 2726345 - 2726334 - G 74 -4.4 -5.01497 | ACCACTAGAGAAAAA CCAT CTTG ATGG GAAGGATAAATTAAA SSO2984 2727468 - 2727986 + | hypothetical protein SSO2985 2729182 - 2728217 - | transposase ISC1439 SSO2986 2729707 - 2729405 - | hypothetical protein SSO2987 2730796 - 2730188 - | hypothetical protein TERM 1006 2731251 - 2731235 - g 70 -6.6 -4.17296 | TTTGAGATACATAAA TTGGCA CAAAT TGCCAA CTATAAGAGACAAAA SSO2988 2730848 - 2731819 + | (phospho) mevalonate kinase, putative SSO2989 2732801 - 2731824 - | diphosphomevalonate decarboxylase, putative TERM 1007 2732215 - 2732227 + g 74 -2.7 -5.3689 | opp_overlap 2732212, overlap 2732221 GATCTTATCATACCC TTTCT AGA AGAGA TTTTCTTTTCTTTCT SSO2990 2733503 - 2732820 - | hypothetical protein TERM 1008 2733221 - 2733233 + g 71 -9.1 -3.18832 | opp_overlap 2733219 2733218, overlap 2733219 GCTTATCTAAAATTT CCCTC TTA GAGGG TATATTATGGAATTC SSO2991 2733830 - 2734393 + | hypothetical protein SSO11637 2734443 - 2734649 + | hypothetical protein TERM 1009 2734911 - 2734892 - gf 77 -9.3 -3.30969 | ACCCACGAAACTGAA GGACGAG GAAAAG CTCGTCC GAATCTTAGAAAAGA SSO2992 2734689 - 2735147 + | transposon ISC1078 Orf1 SSO2993 2735108 - 2735701 + | second ORF in transposon ISC1078 SSO2994 2735717 - 2736394 + | hypothetical protein SSO2995 2737575 - 2736391 - | manganese transporter, putative TERM 1010 2738296 - 2738282 - g 71 -8.6 -3.2614 | TATTTCTGAGATTAA TGCAAG AGG CTTGCA GGGAGGTTGAAGATG hdb-3 2737693 - 2738847 + | 3-hydroxyacyl-CoA dehydrogenase (hdb-3) SSO2998 2740170 - 2738911 - | hypothetical protein thsC 2741835 - 2740216 - | thermosome subunit gamma SSO3002 2743337 - 2741925 - | glycosyltransferase dhg-1 2744632 - 2743532 - | glucose 1-dehydrogenase (dhg-1) fabG 2745788 - 2744889 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 1011 2745141 - 2745123 - G 72 -3.9 -5.04601 | overlap 2745116 GTCAGAAACTAAAAA TGTAACT AATGA AGCTACA TCCTCAGGCTTTCCA SSO3006 2748695 - 2745789 - | Alpha-mannosidase TERM 1012 2749538 - 2749550 + G 72 -4.1 -4.91712 | ATGGAGCTGATGGAG CACTA ATC TGGTG TTTTTCTGACTTCCC SSO3007 2748748 - 2750541 + | hypothetical protein SSO3008 2750583 - 2751812 + | dehydrogenase, putative TERM 1013 2752084 - 2752113 + F 72 -5.1 -4.87665 | opp_overlap 2752084 TAAGTTTACCAAGAA CTGTATTACGAAA AGAC TATCGTAATAAAG TTTTTATAAATAAAG cutA-7 2752144 - 2754315 + | carbon monoxide dehydrogenase, large chain (cutA-7) SSO3010 2754394 - 2755527 + | hypothetical protein TERM 1014 2755831 - 2755816 - g 76 -3.2 -5.25893 | overlap 2755819 ATATAGATGAAAAAA GAGTGA AAGA TCTCTC TCAAAAAACGGGGTG SSO3011 2755698 - 2756789 + | dehydrogenase, putative TERM 1015 2756782 - 2756794 + T 77 -7.7 -4.02733 | opp_overlap 2756782 AACAGTTTCAACCAA GAGCT TAA AGCTC TTCTTATCTATTTTA SSO3012 2759355 - 2756764 - | ABC transporter, ATP binding protein TERM 1016 2759847 - 2759863 + G 77 -8.1 -3.93963 | AAGGCTAAAGAACTT TTACCTA GAT TAGGTAA TTTATCCCTAATAAT SSO3013 2759451 - 2760410 + | dehydrogenase, putative SSO3014 2761441 - 2760407 - | oxidoreductase SSO3015 2761902 - 2762969 + | dehydrogenase, putative SSO3016 2763821 - 2762961 - | hypothetical protein TERM 1017 2763517 - 2763529 + g 75 -9.1 -3.52341 | TCTAGCCAGTCCTTA GCCTC GTT GAGGC TTATCCTATTCGGCT TERM 1018 2764327 - 2764339 + G 78 -7.7 -4.18762 | opp_overlap 2764318 TTATAACAATGAGTA TTGGC ATA GCCAA TTTTGGGTGGAACTT SSO3017 2764032 - 2765183 + | hypothetical protein SSO3018 2765406 - 2766371 + | transposase ISC1439 lacS 2766637 - 2768106 + | Beta-glycosidase (LACS) SSO3021 2769890 - 2768103 - | permease xylS 2772109 - 2769914 - | Alpha-xylosidase (xylS) SSO11734 2772219 - 2772497 + | transposase ISC1058 Orf1 SSO3023 2772494 - 2773108 + | second ORF in transposase ISC1058 SSO3025 2773247 - 2773726 + | hypothetical protein SSO3026 2774035 - 2773706 - | hypothetical protein TERM 1019 2773768 - 2773789 + g 75 -8.8 -3.481 | opp_overlap 2773767 2773771, overlap 2773771 AGATGTGAAGGAAGG GAAGGAGT TCGCGT ACTCCTTC TTCATCTTTGACTTG SSO3027 2775244 - 2774114 - | transposase ISC1225 TERM 1020 2775178 - 2775157 - G 71 -8.7 -3.14344 | opp_overlap 2775160 2775162, overlap 2775162 TATTTTGGTGAGGAA GACCAGGTG TTAT CACCTTGTC TTCACCACGTGATAA TERM 1021 2775316 - 2775287 - H 70 -8.1 -3.11634 | opp_overlap 2775293 2775297 TCTGATATTACCCAA CCAAAATTATTTT TTGT AAAATGATTTTGG GTCTACCGATTAAAA SSO3028 2775506 - 2776465 + | transposase ISC1234 TERM 1022 2777363 - 2777390 + F 74 -8.6 -3.31726 | overlap 2777361 CATTATTTTGTGTGA TAGATTAGTTAG CATC CTAGCTAGTCTA TATTGTATAAACGAC SSO3029 2777610 - 2778416 + | hypothetical protein SSO3030 2779344 - 2779045 - | third ORF in transposon ISC1212 SSO11766 2779475 - 2779296 - | second ORF in transposon ISC1212 SSO3031 2779981 - 2779559 - | transposon ISC1212 Orf1 SSO3032 2782593 - 2780329 - | Beta-xylosidase TERM 1023 2782527 - 2782544 + g 74 -2.7 -5.24989 | GAGCGTCTATTGGTA TAGCTTG GAGT TGAGCTA TTTTTTCCTCTATGC SSO3033 2783209 - 2784174 + | transposase ISC1439 SSO3034 2784903 - 2784328 - | hypothetical protein dapA-2 2784953 - 2785861 + | dihydrodipicolinate synthase (dapA-2) gusB 2787694 - 2785982 - | Beta-glucuronidase (gusB) TERM 1024 2787535 - 2787545 + g 73 -6.8 -4.3534 | opp_overlap 2787534 TCCCAGAAAACTGAT CCCA CTT TGGG TTTTGCTCATTCCAA SSO3037 2787812 - 2788291 + | hypothetical protein SSO3038 2788619 - 2789539 + | hypothetical protein SSO3039 2792033 - 2789622 - | hypothetical protein SSO3041 2792118 - 2792975 + | hypothetical protein dhg-2 2792972 - 2794132 + | glucose 1-dehydrogenase (dhg-2) SSO3043 2796309 - 2794177 - | ABC transporter, binding protein TERM 1025 2795083 - 2795098 + g 74 -7.6 -3.89302 | overlap 2795094 AATGATGGTCATTGC TGGTAC TGCA GTACCA TTTGGTGTAATTAGT SSO3045 2797270 - 2796467 - | ABC transporter, ATP binding protein SSO3046 2798258 - 2797263 - | ABC transporter, ATP binding protein SSO3047 2799235 - 2798255 - | ABC transporter, permease TERM 1026 2799066 - 2799082 + g 74 -9.5 -3.02144 | opp_overlap 2799079 2799080 GCGCTTGGATTGTAT GGAGTAT AAA ATACTCC TATTAAGGAAAATAC SSO3048 2800256 - 2799228 - | ABC transporter, permease TERM 1027 2799994 - 2799980 - G 73 -6.4 -4.19177 | overlap 2799966 ATTCGGTAAGAGAAA CACCGA AAT TCAGTG TAACTATTTCTTTTA SSO3049 2800800 - 2801915 + | dehydrogenase, putative TERM 1028 2802447 - 2802469 + G 70 -8.4 -3.30635 | overlap 2802450 GCCATACATAATCAT GGTCCCTATC ATA GATGGGGGTC TTATAAGAAGATTTA SSO3050 2802084 - 2802797 + | hypothetical protein malA 2804870 - 2802789 - | Alpha-glucosidase (malA) TERM 1029 2805770 - 2805753 - g 75 -7.1 -4.2109 | CAATATATAGAGAAA GTTAGAT TACT ATCTAAC GAGTTCTCTGCAACT SSO3052 2805291 - 2805923 + | hypothetical protein SSO3053 2808286 - 2806121 - | maltose ABC transporter, maltose binding protein SSO3054 2808423 - 2809529 + | oxidoreductase SSO3055 2811463 - 2809610 - | maltose ABC transporter, ATP-binding protein SSO3056 2811643 - 2812542 + | transposase ISC1058 TERM 1030 2813587 - 2813602 + G 70 -3.2 -5.05116 | overlap 2813588 ACTTCAAAGGATTTA CCCCTT CTCC AAGGGA TTTTCTTATTTATCG SSO3058 2812735 - 2813703 + | maltose ABC transporter, permease SSO3059 2813690 - 2814661 + | maltose ABC transporter, permease TERM 1031 2814809 - 2814792 - T 72 -4.9 -4.85653 | opp_overlap 2814803, overlap 2814803 CATAGATAAAAGAAA TCACACA AAGA TATGTGA TACTCATAATTCATT fucA1 2816473 - 2815262 - | Alpha-fucosidase C-terminal fragment (fucA1) fucA1 2816748 - 2816503 - | Alpha-fucosidase N-terminal fragment (fucA1) SSO3061 2816852 - 2817589 + | hypothetical protein SSO11870 2817854 - 2817591 - | hypothetical protein TERM 1032 2817986 - 2818002 + r 71 -8.7 -2.86722 | overlap 2818000 AAGGAACTAATGTTA CGTTGGT GAA ACCAGCG TGTAATGCTATCTTT SSO3062 2818387 - 2818016 - | hypothetical protein SSO3063 2818966 - 2820033 + | transposase ISC1229 TERM 1033 2820039 - 2820075 + F 71 -8.1 -3.35371 | opp_overlap 2820041, overlap 2820041 2820067 GCCCAAGTGACCCAA AATCGCCACGTGAAT CCTTTCA ATTCACGTGGCAATC TTAGTTGACACTATG TERM 1034 2820073 - 2820041 - f 100 -13.6 -4.21275 | opp_overlap 2820039 2820041 2820067 CCAAGTGACCCAAAA TCGCCACGTGAATC CTTTC AATTCACGTGGCAA TCTTAGTTGACACTA TERM 1035 2820041 - 2820073 + F 83 -10.7 -3.24329 | opp_overlap 2820041, overlap 2820039 2820067 CCAAGTGACCCAAAA TCGCCACGTGAAT CCTTTCA ATTCACGTGGCAA TCTTAGTTGACACTA TERM 1036 2820230 - 2820212 - f 74 -6.8 -4.18494 | overlap 2820213 TAGCTTCATTTAAAA CCTCTAAT TAT ATTAGAGA TGTAAAGGGTTAAGC TERM 1037 2820229 - 2820213 - f 70 -8.1 -3.10775 | overlap 2820212 AGCTTCATTTAAAAC CTCTAAT TAT ATTAGAG ATGTAAAGGGTTAAG TERM 1038 2820318 - 2820297 - g 73 -6.7 -4.30043 | gap 1 ATAAAGGGAAAAGAA GAGTTTT-GG GAA CCTAAAACTC AAATTGATACAATTA fadD-3 2820276 - 2821817 + | long-chain-fatty-acid--CoA ligase (fadD-3) TERM 1039 2822486 - 2822518 + G 71 -7.2 -3.88498 | overlap 2822490 CTGGTAAGCTACAGG GTATCTTTTGGG-CTC ATG GAGGCCCAGAAG-TAC TTTCCTATGTGGAAC TERM 1040 2822490 - 2822515 + G 70 -9.1 -3.01329 | gap 1, overlap 2822486 TAAGCTACAGGGTAT CTTTTGGG-CTC ATG GAGGCCCAGAAG TACTTTCCTATGTGG SSO3066 2822074 - 2823936 + | arabinose ABC transporter arabinose-binding protein SSO3067 2823972 - 2824829 + | arabinose ABC transporter permease TERM 1041 2825210 - 2825178 - g 74 -8 -3.92869 | gap 1, opp_overlap 2825188, overlap 2825180 GTACTTAGTGAGAAA CATGGAATAATAAGC AATG GCTTATT-TTCCATA ATGGCCTTAGCAACC TERM 1042 2825208 - 2825180 - g 72 -8.4 -3.55378 | gap 1, opp_overlap 2825188, overlap 2825178 ACTTAGTGAGAAACA TGGAATAATAAGC AATG GCTTATT-TTCCA TAATGGCCTTAGCAA SSO3068 2824836 - 2825723 + | arabinose ABC transporter permease TERM 1043 2826479 - 2826469 - g 70 -5.4 -4.42464 | AACTGGTGAAATAAA CTTG ATA CAAG CAAAGATAATAGAAA SSO3069 2825729 - 2826844 + | arabinose ABC transporter ATP-binding protein TERM 1044 2827335 - 2827315 - g 79 -6.9 -4.52047 | opp_overlap 2827320 GATGACAGGATAAAA GAGAATTAC GTT GTAATGCTC TACACTGGTTTCTCA SSO3071 2826964 - 2827695 + | hypothetical protein dapA-3 2828577 - 2827669 - | dihydrodipicolinate synthase (dapA-3) SSO3073 2829376 - 2828615 - | hypothetical protein SSO3074 2830467 - 2831321 + | hypothetical protein TERM 1045 2831421 - 2831437 + F 75 -5.1 -4.99435 | overlap 2831412 TTATGAAGGGCATCC CCATTTC TCG GTAATGG TTTTTACTTCTTAGA TERM 1046 2831641 - 2831616 - f 74 -6.3 -4.52589 | overlap 2831618 2831623 GCCTCTTATATAAAA CATATTACTCA GATC TGAGTAATACA GATCTGACTGGGGTG TERM 1047 2831639 - 2831618 - f 81 -8.9 -3.87627 | overlap 2831616 2831623 CTCTTATATAAAACA TATTACTCA GATC TGAGTAATA CAGATCTGACTGGGG SSO3075 2831759 - 2832061 + | partial transposase in ISC1190 SSO3076 2831958 - 2832272 + | partial transposase in ISC1190 TERM 1048 2832464 - 2832430 - g 76 -10.7 -2.60901 | overlap 2832418 2832429 ATAGTGTCAACTAAG GTTGCCACGTGGGTC CTTTC AACCCACGTGGCGAT TCGGGGGAGGGCTTA SSO3077 2832250 - 2832648 + | hypothetical protein SSO11909 2832735 - 2832917 + | hypothetical protein SSO3078 2833517 - 2833113 - | hypothetical protein SSO11914 2833719 - 2833498 - | hypothetical protein SSO11915 2833968 - 2834108 + | hypothetical protein SSO11917 2834188 - 2834448 + | partial ORF in transposon ISC1212 SSO11920 2834502 - 2834732 + | hypothetical protein SSO3079 2834843 - 2836114 + | membrane transporter SSO3080 2836233 - 2836898 + | hypothetical protein SSO3081 2837281 - 2836895 - | hypothetical protein SSO3082 2837895 - 2837278 - | hypothetical protein SSO3083 2838761 - 2837886 - | ABC transporter, ATP binding protein, putative TERM 1049 2838802 - 2838792 - R 74 -4 -5.28683 | opp_overlap 2838792 ATTAACACTAAAAAA CTTT TTA AAAG ATTAATGTGGCTTTA SSO3084 2839158 - 2838796 - | hypothetical protein SSO11934 2839442 - 2839155 - | hypothetical protein SSO3085 2840662 - 2839433 - | hypothetical protein SSO11939 2840914 - 2840666 - | hypothetical protein SSO3086 2841343 - 2840996 - | hypothetical protein TERM 1050 2841304 - 2841288 - G 71 -7.3 -3.95435 | overlap 2841291 TGTCCTAAAATATAA GAACCCA AAT TGGATTC AACTATATAGGCAAT SSO3087 2841725 - 2841324 - | hypothetical protein SSO3088 2842704 - 2841730 - | hypothetical protein SSO3089 2843003 - 2844223 + | hypothetical protein SSO3090 2844180 - 2845145 + | hypothetical protein SSO3091 2845130 - 2845666 + | hypothetical protein SSO3092 2846667 - 2845663 - | hypothetical protein SSO3093 2847346 - 2846633 - | ABC transporter, ATP binding protein, putative SSO3095 2847639 - 2849297 + | hypothetical protein SSO3097 2849348 - 2850010 + | hypothetical protein SSO3098 2850747 - 2850007 - | hypothetical protein TERM 1051 2850291 - 2850313 + g 85 -9.3 -4.06866 | opp_overlap 2850295 CAGCTAGGCCGTGAA TCCAGATTA ATTTG TAATCTGGA TTATTATCTTTATCC SSO3099 2852477 - 2850831 - | hypothetical protein SSO3100 2853327 - 2852584 - | hypothetical protein SSO3101 2853692 - 2854657 + | transposase ISC1439 TERM 1052 2854664 - 2854691 + F 100 -21.4 -3.2963 | CTTCTCTAACTTCCT CGGCGTGCAGAG GACA CTCTGCACGCCG TTCTAACCACGTGAT TERM 1053 2854737 - 2854712 - f 72 -4.9 -4.86001 | ACCACGTGATAAAAA TTCAGATTA TCTCCCTT TAATCTGAA TCTACACGTTATGTT TERM 1054 2855121 - 2855154 + F 84 -9.9 -3.54511 | opp_overlap 2855127, overlap 2855122 2855127 AGGATTCATATAGCC ATAAAACTCTTAAAA ATAT TTTTAAGAGTTTTAA TTATAATTGAATTCT TERM 1055 2855122 - 2855153 + F 100 -13.4 -2.71984 | opp_overlap 2855127, overlap 2855121 2855127 GGATTCATATAGCCA TAAAACTCTTAAAA ATAT TTTTAAGAGTTTTA ATTATAATTGAATTC TERM 1056 2855127 - 2855148 + F 89 -8.9 -4.52781 | opp_overlap 2855127, overlap 2855122 2855121 CATATAGCCATAAAA CTCTTAAAA ATAT TTTTAAGAG TTTTAATTATAATTG TERM 1057 2855148 - 2855127 - f 89 -8.9 -4.46155 | opp_overlap 2855122 2855121 2855127 CATATAGCCATAAAA CTCTTAAAA ATAT TTTTAAGAG TTTTAATTATAATTG TERM 1058 2855522 - 2855535 + G 73 -5.3 -4.58773 | ATTATATCTCACTCC CAGTA ATAC TACTG TTTTCATTTACTACA SSO3103 2855307 - 2856095 + | hypothetical protein SSO3104 2856163 - 2856696 + | hypothetical protein SSO3105 2858191 - 2856788 - | thermostable carboxypeptidase 1 ilvD 2859898 - 2858222 - | dihydroxy-acid dehydratase SSO11972 2860119 - 2860394 + | hypothetical protein tatC-like 2860405 - 2861274 + | tatC-like protein, putative (tatC-like) SSO3110 2861325 - 2861942 + | hypothetical protein SSO3111 2861986 - 2862510 + | hypothetical protein SSO11979 2862614 - 2862883 + | hypothetical protein SSO3112 2863234 - 2862884 - | hypothetical protein acaB-10 2864388 - 2863231 - | Acetyl-CoA c-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-10) fabG-10 2865143 - 2864385 - | 3-oxoacyl-(acyl carrier protein) reductase (fabG-10) SSO11986 2866242 - 2866033 - | hypothetical protein TERM 1059 2866375 - 2866355 - R 74 -7.7 -3.89607 | overlap 2866351 2866368 TATTATAAAAAGGAA TCACTTAAC CAT ATTAAGTGA ATACACTTGATCGAT SSO3115 2867287 - 2866355 - | Tricorn protease interacting factor F1 aldhT 2868784 - 2867348 - | aldehyde dehydrogenase SSO3118 2868858 - 2869754 + | hypothetical protein SSO3120 2871228 - 2869777 - | metabolite transport protein SSO3121 2871528 - 2872829 + | metabolite transport protein SSO3123 2874160 - 2872826 - | hypothetical protein SSO3124 2875317 - 2874196 - | mandelate racemase/muconate lactonizing family protein SSO3125 2875393 - 2876634 + | hypothetical protein SSO3127 2878655 - 2876706 - | raffinose synthase (Sip1 seed imbibition) protein TERM 1060 2878011 - 2878039 + g 71 -4.7 -4.64861 | opp_overlap 2878033, overlap 2878003 TTTGTCCGGAAATCC CTTTTCCTTTC TCAATTT GAAAGTAAAAG TTTCTTTTGACGCAA SSO3128 2879300 - 2878899 - | hypothetical protein SSO12018 2879523 - 2879278 - | hypothetical protein TERM 1061 2879474 - 2879490 + g 100 -8.1 -5.25803 | overlap 2879463 TCCCTTATTTCTTTA GGAATAA CTA TTATTCC TTTTTTATAAACCTT SSO3129 2879784 - 2881247 + | transporter SSO3130 2882446 - 2881292 - | Iron-sulfur protein, putative SSO3131 2883335 - 2882436 - | heterodisulfide reductase related protein SSO3132 2883400 - 2884029 + | hypothetical protein SSO3135 2886074 - 2885076 - | transposase ISC1359 TERM 1062 2886022 - 2886050 + g 89 -11 -4.09827 | ATCTTGAGGGCGGAC CTGGCGAAGTCC CGGTT GAACTTCGCCGG TTTAGTTGTATTCTC SSO3136 2886391 - 2886876 + | regulatory protein, putative SSO3138 2887369 - 2886869 - | hypothetical protein SSO3139 2888815 - 2887379 - | hypothetical protein SSO3140 2890428 - 2888776 - | hypothetical protein SSO3141 2890988 - 2890425 - | hypothetical protein SSO3142 2891046 - 2892449 + | hypothetical protein TERM 1063 2892461 - 2892477 + T 83 -6.7 -4.74518 | ATGATAAAAATTGCA CTTTTTT TAA AAAAAAG TTTATTTTGATAATT SSO3143 2893825 - 2892479 - | permease, putative SSO3144 2893927 - 2895045 + | carnitine dehydratase, putative acd-7 2896206 - 2895037 - | Acyl-CoA dehydrogenase (acd-7) SSO3146 2897035 - 2896247 - | hypothetical protein TERM 1064 2896486 - 2896474 - G 81 -9.1 -4.12188 | TGAGTATTGGTAAAA GTGGG AGC CCCAC ATAAAACACTATGGT TERM 1065 2897829 - 2897851 + G 71 -4.2 -4.87133 | overlap 2897827 GCTTCGATGAATGCG TTAGTTAACG TCA TGTTACCTAA TTTTCTTTACGCCGT SSO3147 2897100 - 2898353 + | permease SSO12063 2898775 - 2898515 - | third ORF in partial transposon ISC1160 SSO12067 2899429 - 2899166 - | second ORF in partial transposon ISC1160 SSO12068 2899601 - 2899440 - | transposon ISC1160 Orf1 TERM 1066 2899759 - 2899744 - R 70 -8.2 -3.05816 | CCATCTCTCACGGAA GGGGAC TTTC GCCCCC TTAACCCCCATTAAG SSO3148 2901368 - 2900316 - | NADH oxidase, putative TERM 1067 2901742 - 2901753 + G 73 -5.8 -4.41137 | overlap 2901737 ATATCTAGAGGTGTC GGAG GACT CTCC TTTCTTCTACTTCTA SSO3149 2901511 - 2902590 + | permease, putative SSO3150 2903238 - 2902630 - | hypothetical protein SSO3151 2903721 - 2904686 + | transposase ISC1439 SSO12083 2905141 - 2905404 + | hypothetical protein SSO3153 2906876 - 2905605 - | second ORF in transposon ISC1778 TERM 1068 2906811 - 2906835 + g 79 -10.8 -3.09671 | overlap 2906815 CTTGTCGTTCTTGAT GGAGTACGTG AAGTA CACGTATTCC TCTTCCGGTTCAAAT SSO3154 2907432 - 2906854 - | transposon ISC1778 Orf1 wrbA 2907619 - 2908212 + | tryptophan repressor binding protein (wrbA) lplA-1 2908952 - 2908209 - | lipoate-protein ligase A (lplA-1) SSO12093 2908988 - 2909233 + | hypothetical protein lipA 2909237 - 2910094 + | lipoyl synthase lplA-2 2910069 - 2910863 + | lipoate-protein ligase A (lplA-2) glcF 2911883 - 2910849 - | glycolate oxidase iron-sulfur subunit. (glcF) glcD 2913283 - 2911880 - | glycolate oxidase glcD subunit. (glcD) TERM 1069 2912580 - 2912596 + g 76 -7.9 -4.06491 | AGAAATTCCATTGCT GCTGGTG TTA CTCCAGC TTTATATACGCTTAC glcE 2914504 - 2913356 - | glycolate oxidase glcE subunit. (glcE) SSO3164 2914470 - 2915096 + | hypothetical protein SSO3166 2916072 - 2915194 - | hypothetical protein SSO3167 2916580 - 2916101 - | MutT-like protein SSO3168 2917580 - 2916831 - | hypothetical protein SSO3169 2918382 - 2917555 - | ABC transporter, ATP binding protein related protein SSO3170 2918395 - 2918769 + | hypothetical protein SSO3171 2918803 - 2919381 + | transposon ISC1778 Orf1 TERM 1070 2919424 - 2919400 - g 79 -10.8 -3.09671 | overlap 2919404 ATTTGAACCGGAAGA GGAATACGTG CACTT CACGTACTCC ATCAAGAATAGTGAG TERM 1071 2919933 - 2919919 - g 73 -8.6 -3.2963 | ACCATTTCGTTACAA GTTACC GTG GGTAAC ACCAGTGAACTTTCT SSO3172 2919359 - 2920627 + | second ORF in transposon ISC1778 SSO3174 2920754 - 2921149 + | hypothetical protein TERM 1072 2921388 - 2921373 - g 70 -2.6 -5.10968 | ATTAATATACAAAAA GAACAA GTCA TTATTC AACAATATTCGACAT SSO3175 2921283 - 2922686 + | hypothetical protein SSO3176 2922727 - 2923095 + | hypothetical protein SSO3177 2923351 - 2923839 + | hypothetical protein TERM 1073 2924283 - 2924294 + G 70 -3 -5.1356 | overlap 2924257 2924276 CGCTTGATTTTTGCA TGTT TCAA AACA TTTTTATTCATAAAA SSO3178 2924258 - 2924584 + | hypothetical protein SSO3179 2925370 - 2924591 - | hypothetical protein TERM 1074 2926070 - 2926055 - g 88 -7.6 -4.87626 | TTGTAACATGAAAAA CTTCCT CGTG AGGAAG AAAATATTTTGTAAT SSO12127 2925963 - 2926160 + | hypothetical protein SSO3180 2927595 - 2926180 - | phosphate transporter SSO3181 2928887 - 2927727 - | hypothetical protein SSO3182 2928941 - 2930848 + | Serine/threonine protein kinase, putative SSO3183 2931259 - 2930867 - | hypothetical protein SSO3184 2932581 - 2931358 - | hypothetical protein SSO12142 2932759 - 2932565 - | hypothetical protein SSO3185 2933272 - 2932955 - | hypothetical protein SSO3186 2933801 - 2933310 - | hypothetical protein serA-2 2934696 - 2933794 - | D-3-phosphoglycerate dehydrogenase, putative (serA-2) SSO3188 2935120 - 2934749 - | hypothetical protein TERM 1075 2935150 - 2935138 - H 72 -4.9 -4.78753 | opp_overlap 2935136 2935138 CTAATATGAATAAAA GATAA TAT TTATC TCTTGTTCCCAGTTG SSO3189 2935330 - 2936877 + | amino acid transporter, putative SSO3191 2939055 - 2937943 - | formate dehydrogenase (amino end fragment) SSO3192 2940071 - 2939133 - | hypothetical protein TERM 1076 2939827 - 2939807 - G 75 -5.5 -4.76963 | overlap 2939817 TCAGATAATAGAAAA TAGAGATAA GCC CTATCCCTA AGGTAAGTAATAATA gapN-3 2941649 - 2940120 - | glyceraldehyde-3-phosphate dehydrogenase, NADP dependent (gapN-3) SSO3195 2942630 - 2941689 - | fructokinase eda 2943566 - 2942640 - | 2-keto-3-deoxy gluconate aldolase (eda) SSO3198 2944714 - 2943527 - | muconate cycloisomerase related protein TERM 1077 2943601 - 2943613 + gH 77 -7.7 -4.05069 | overlap 2943596 CTAATGGTATTGGTT CAGCT CTT AGCTG TTCTATTATTTTTTC TERM 1078 2943841 - 2943852 + gH 71 -4.4 -4.84359 | CCACCTCTACATCAT TAGC TTCA GCTA TTTTTATAACACTCC SSO3199 2944751 - 2945137 + | hypothetical protein SSO3200 2945491 - 2945105 - | hypothetical protein SSO3201 2946087 - 2945488 - | hypothetical protein SSO3202 2947924 - 2946137 - | hypothetical protein TERM 1079 2947504 - 2947521 + g 75 -7.1 -4.1899 | opp_overlap 2947498, overlap 2947507 CTCCAGAACCTATTG TAATAGC GGAA GCTATTA TTTTAACTGGAATAA TERM 1080 2948933 - 2948912 - g 71 -4.5 -4.72631 | opp_overlap 2948930 ATTAAGCCAAGAAAA TGATGTATT ATTC AATACTTCA GACATTGGCTGGATT acsA-10 2948037 - 2949995 + | Acetyl-CoA synthetase (acetate-CoA ligase) (acsA-10) dhg-3 2951066 - 2949984 - | glucose 1-dehydrogenase (dhg-3) TERM 1081 2951306 - 2951296 - H 85 -6.8 -5.00616 | opp_overlap 2951296, overlap 2951301 CTTGGTGCTAAAAAA CGCA AGA TGCG TAGTTTCTCGGCATC SSO3205 2951576 - 2952409 + | hypothetical protein SSO3206 2952434 - 2952814 + | protein synthesis inhibitor, putative SSO3207 2955046 - 2953037 - | Ser/thr protein kinase, putative SSO3209 2955987 - 2955190 - | aldo/keto reductase family oxidoreductase ilvB-6 2957621 - 2955990 - | acetolactate synthase catalytic subunit gabT-2 2957760 - 2959016 + | 4-aminobutyrate aminotransferase SSO3212 2959447 - 2959013 - | hypothetical protein SSO3213 2959531 - 2960316 + | hypothetical protein SSO3214 2962644 - 2960332 - | hypothetical protein SSO12199 2962899 - 2962648 - | hypothetical protein SSO3215 2963272 - 2962883 - | hypothetical protein TERM 1082 2963320 - 2963310 - g 81 -5.4 -5.1101 | GCAGTAGGTAAAAAA GTTG TCA CAAC GCAAAATTACATAGC SSO3216 2963286 - 2964722 + | gamma-glutamyltranspeptidase SSO3217 2965630 - 2964929 - | second ORF in transposon ISC1316 TERM 1083 2964994 - 2964980 - G 84 -11.4 -3.26471 | GGAGCTCCACACTAA GGGTCG CTC CGACCC CGCACCCTTCAAAAT SSO12210 2966117 - 2965911 - | transposon ISC1316 Orf1 TERM 1084 2966265 - 2966246 - R 73 -7.8 -3.61178 | opp_overlap 2966235 2966246, overlap 2966235 GGGATTCATCTCAAA GAGGCGAA GTTT TCCGCCCC CTTTGAACCCCCGTC SSO3218 2967834 - 2966938 - | hypothetical protein SSO3219 2968612 - 2967851 - | sugar phosphate nucleotydyl transferase SSO3220 2968706 - 2969605 + | transposase ISC1058 SSO3224 2971064 - 2969724 - | amino acid transporter-like protein SSO3225 2972241 - 2971123 - | hypothetical protein SSO3226 2973071 - 2972253 - | hypothetical protein SSO3227 2973752 - 2973081 - | hypothetical protein SSO3228 2974393 - 2973740 - | hypothetical protein SSO3230 2975121 - 2974651 - | hypothetical protein TERM 1085 2975697 - 2975670 - g 75 -10 -2.89055 | gap 1, opp_overlap 2975669 2975668 2975695, overlap 2975673 TAAACTGGGCATATA GGA-CAGTAGAAG TAA CTCCTACTGATCC AGTTTATGGATGGTT TERM 1086 2975693 - 2975673 - g 76 -10.5 -2.6927 | opp_overlap 2975669 2975668, overlap 2975670 ACTGGGCATATAGGA CAGTAGAAG TAA CTCCTACTG ATCCAGTTTATGGAT htpX-2 2975459 - 2976436 + | heat shock protein HtpX guaA 2977540 - 2976437 - | GMP synthase PP-ATPase subunit SSO3233 2978956 - 2977559 - | cobyric acid synthase TERM 1087 2978137 - 2978148 + g 73 -5.8 -4.4784 | opp_overlap 2978136 2978137 GTAAAATTACAAGAT CTGC CTTT GCAG TTTCTTTGGGCTTTC SSO3234 2978992 - 2979753 + | cobalamin synthase related protein SSO3237 2981609 - 2980572 - | sorbitol dehydrogenase cbiB 2979726 - 2980643 + | cobalamin biosynthesis protein B (cbiB) SSO3238 2981651 - 2982199 + | hypothetical protein cutA-8 2982208 - 2984340 + | carbon monoxide dehydrogenase, large chain (cutA-8) SSO3240 2984344 - 2984802 + | hypothetical protein SSO3241 2984729 - 2985496 + | dolichol-phosphate mannosyltransferase SSO3242 2985797 - 2985474 - | hypothetical protein ocd-like2 2985858 - 2986814 + | ornithine cyclodeaminase related protein (ocd-like2) aspB-4 2986787 - 2987929 + | aspartate aminotransferase (aspB-4) SSO3246 2988291 - 2987926 - | hypothetical protein SSO3247 2988382 - 2988735 + | hypothetical protein SSO3248 2988756 - 2989226 + | hypothetical protein SSO3250 2989274 - 2990017 + | hypothetical protein SSO3251 2990940 - 2990014 - | hypothetical protein SSO12252 2991218 - 2990967 - | hypothetical protein