TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.741756 %AT, 672991 nt, 4438 terms. Intergenic: 0.772996 %AT, H2T: 57447 nt, 542 terms; T2T: 15513 nt, 420 terms; H2H: 19434 nt, 454 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|170761847|ref|NC_010503.1| Ureaplasma parvum serovar 3 str. ATCC 27815, complete genome (length 751679) TERM 1 349 - 322 - g 73 -5.8 -4.56702 | opp_overlap 328 TTTTAATTAAAGAAA CTAATATTAAAA ATCG TTTTAATTTTAG TGATGAACTTTTACG dnaA 27 - 1400 + | chromosomal replication initiator protein DnaA rpmE 1541 - 1828 + | ribosomal protein L31 TERM 2 1894 - 1928 + F 90 -8.8 -4.74132 | opp_overlap 1886 1894 1899 1902, overlap 1899 1927 TTAAAAATTAGTAGA TTAAATAACAGGCAAT TAG ATTACCTGTTATTTTA TTTTTACTAAAATAT TERM 3 1928 - 1894 - f 84 -11 -2.94225 | opp_overlap 1894 1899 1927, overlap 1886 1899 1902 TTAAAAATTAGTAGA TTAAATAACAGGCAAT TAG ATTACCTGTTATTTTA TTTTTACTAAAATAT TERM 4 1923 - 1899 - f 93 -10.9 -3.87318 | opp_overlap 1894 1899, overlap 1894 1886 1902 AATTAGTAGATTAAA TAACAGGCAAT TAG ATTACCTGTTA TTTTATTTTTACTAA TERM 5 1899 - 1923 + F 95 -8.7 -5.3104 | opp_overlap 1899 1894 1886 1902, overlap 1894 AATTAGTAGATTAAA TAACAGGCAAT TAG ATTACCTGTTA TTTTATTTTTACTAA TERM 6 1920 - 1902 - f 77 -8.2 -4.05877 | opp_overlap 1899 1894, overlap 1899 1894 1886 TAGTAGATTAAATAA CAGGCAAT TAG ATTACCTG TTATTTTATTTTTAC prfA 1961 - 3040 + | peptide chain release factor 1 TERM 7 3183 - 3207 + G 72 -7.3 -3.69449 | opp_overlap 3183 3189, overlap 3182 3192 TAACCGCTTAACAAT TGTAAATTCTA ATT TAGAATATACA TATTTTAAACTATTA UPA3_0004 3040 - 3912 + | HemK family methyltransferase UPA3_0005 3899 - 4453 + | hypothetical protein UPA3_0006 4457 - 4921 + | RpiB/LacA/LacB family sugar-phosphate isomerase TERM 8 4924 - 4939 + F 71 -3.4 -5.51165 | GCAAAATAGTTAATT TTAAAA GTTT TTTTAA TTTTTTTAACATTTT UPA3_0007 5017 - 5577 + | hypothetical protein UPA3_0008 5580 - 6056 + | hypothetical protein TERM 9 6090 - 6115 + F 100 -7.7 -6.01369 | opp_overlap 6090 6097, overlap 6097 AAAAAGAAGAAGAAA GAGAGAAGAGT TAAA ACTCTTTTTTC TTTTTTTATTGTTTA TERM 10 6097 - 6108 + F 89 -4.4 -6.12458 | opp_overlap 6090 6097, overlap 6090 AGAAGAAAGAGAGAA GAGT TAAA ACTC TTTTTTCTTTTTTTA mgtE 6201 - 7823 + | magnesium transporter TERM 11 7950 - 7940 - f 84 -5.4 -5.35815 | overlap 7944 TATATTAAACAAAAA TGCA TGT TGCA AACACATATTCTAAA UPA3_0010 7980 - 8480 + | 50S ribosomal protein L10 rplL 8505 - 8870 + | ribosomal protein L7/L12 TERM 12 8893 - 8943 + T 93 -8.7 -5.09221 | gap 1, opp_overlap 8906 TTTTTTATAAATTGT TATTAATTAAAAACCGGCATCTTT TATA AAGGATACCGGTTTTTAATTC-TA TTTGTTTTTGTTCTA TERM 13 8931 - 8906 - T 86 -8.3 -4.90266 | opp_overlap 8893 GTTATTAATTAAAAA CCGGCATCTTT TATA AAGGATACCGG TTTTTAATTCTATTT UPA3_0012 10645 - 9095 - | hypothetical protein TERM 14 9928 - 9906 - G 70 -7.8 -3.13522 | overlap 9904 ATTGCTTCAGTAACA GCTATTCC AACTTGA GGAATAGC TACTGGTAAAATTAA TERM 15 11023 - 11008 - R 82 -4.7 -5.88565 | opp_overlap 11003 11008 TCTATAATAAAAAAA TGTGC AAATAA GCACA TTTTAATTTATCTTT UPA3_0013 11960 - 11031 - | ribose/galactose ABC transporter TERM 16 11210 - 11194 - G 77 -7.3 -4.24123 | overlap 11186 GTAATAACTGCAAAA GCAATTG AAA CAACTGC AATTAGTGGAATTCT UPA3_0014 14170 - 11960 - | ribose/galactose ABC transporter TERM 17 11987 - 12026 + g 86 -11.1 -3.29541 | opp_overlap 11999, overlap 11986 11998 CTCTTTCATGTTTTG TTGATTAATAATTGCTT TTTGAT AAGCAGTTGTTAATCAA TCTTCTAATAATAAT TERM 18 12587 - 12599 + g 71 -4.9 -4.8622 | ATATTTACTAATTTC TTTAG CCA CTAAA TTTTTAATTAAAAAA UPA3_0015 15780 - 14173 - | methylgalactoside permease ATP-binding protein TERM 19 14918 - 14895 - G 80 -8.2 -4.08689 | opp_overlap 14897, overlap 14897 TACTTAACAATGAAA CATCATCACC TTTT GGTGATGATT TAACTTTCACAATAT TERM 20 14897 - 14916 + g 93 -10.8 -3.84719 | opp_overlap 14897 14895 CTTAACAATGAAACA TCATCACC TTTT GGTGATGA TTTAACTTTCACAAT TERM 21 14916 - 14897 - G 87 -10.8 -3.62957 | opp_overlap 14897, overlap 14895 CTTAACAATGAAACA TCATCACC TTTT GGTGATGA TTTAACTTTCACAAT TERM 22 15119 - 15135 + g 70 -6.5 -4.17906 | opp_overlap 15118 CCGCGACGAATAACT GTTGCAG AAT CAGCAAC TTCTTTAATTTCATT UPA3_0016 17410 - 15836 - | hypothetical protein TERM 23 16135 - 16145 + g 71 -2.6 -5.51402 | ATTTTTGTAATTCAC TAAA TGA TTTA TTTTTTTCACTATCT TERM 24 17339 - 17324 - G 72 -9 -2.67694 | opp_overlap 17317, overlap 17321 ACTATCATTACATGA TGCAGC AATA GCTGCA ACTGAAGTTAATGTA UPA3_0017 18378 - 17581 - | TatD family hydrolase trmE 19696 - 18380 - | tRNA modification GTPase TrmE TERM 25 18881 - 18867 - G 73 -5.8 -4.6635 | opp_overlap 18862 18857 18866 18867 AAATTTTCAACAAAA TCATTT GTT AAATGA ATTCCTGCAGTATCT TERM 26 19059 - 19095 + g 77 -4.7 -5.14894 | AACACCCTAATGCCT TTATTGATTGGTAAAAA TTT TTTTGATTGATCAATAA TTTTTGTAATTTTTT TERM 27 19543 - 19572 + g 72 -3.1 -5.36181 | overlap 19524 AAATTTGATTATCAT CTTTTAGAATT GTATACCA AATTTTAAAAG TTTCTTTTTTTATTT UPA3_0019 20493 - 19699 - | DNA polymerase III delta subunit tmk 21186 - 20494 - | thymidylate kinase TERM 28 20561 - 20588 + g 90 -5.8 -5.54192 | opp_overlap 20580, overlap 20564 CATAATACTTCATTT TCATTTTTATTG GCAT CAATAAAAATAA TTTTTTTAGGTTGAT TERM 29 20564 - 20585 + g 70 -7.5 -3.52477 | opp_overlap 20580, overlap 20561 AATACTTCATTTTCA TTTTTATTG GCAT CAATAAAAA TAATTTTTTTAGGTT UPA3_0021 22030 - 21167 - | triacylglycerol lipase UPA3_0022 23158 - 22136 - | ferrichrome ABC transporter UPA3_0023 24172 - 23159 - | ferrichrome ABC transporter TERM 30 23365 - 23337 - G 72 -6.2 -4.33281 | ATTTGAAATAAATAA TTAGTTCTTTTA AAAAG TAAACGAACTAA ATGGGGCATAACAAT UPA3_0024 25601 - 24201 - | putative ABC substrate-binding protein - iron UPA3_0025 26740 - 25637 - | ferrichrome ABC transporter TERM 31 26896 - 26854 - R 100 -14.4 -4.18506 | opp_overlap 26866, overlap 26857 26866 TTATTTTTAAAATAA TAGGAATAAAAACACAACCG CAT CGGTTGTGTTTTTCCTCTTA AAACATTAAATTATT TERM 32 26893 - 26857 - R 100 -16.1 -2.80579 | opp_overlap 26866, overlap 26854 26866 TTTTTAAAATAATAG GAATAAAAACACAACCG CAT CGGTTGTGTTTTTCCTC TTAAAACATTAAATT TERM 33 26884 - 26866 - R 100 -13.2 -5.19251 | opp_overlap 26866, overlap 26857 26854 TAATAGGAATAAAAA CACAACCG CAT CGGTTGTG TTTTTCCTCTTAAAA TERM 34 26866 - 26884 + r 100 -13.2 -4.87626 | opp_overlap 26857 26854 26866 TAATAGGAATAAAAA CACAACCG CAT CGGTTGTG TTTTTCCTCTTAAAA UPA3_0026 27956 - 26907 - | 30S ribosomal protein S2 TERM 35 28066 - 28084 + r 74 -5.4 -4.76312 | overlap 28067 ATAAATTATTTATTT TGATTAAA TCC TTTAATCG TTTTTAAATATTCTA UPA3_0027 29027 - 28056 - | putative ABC substrate-binding protein - iron TERM 36 28244 - 28261 + g 78 -2.8 -5.95449 | ATGTTTTATAATTTT CAATAA CTTCTT TTATTG TTTTTTGTTTTGTTT TERM 37 28676 - 28693 + g 91 -5.7 -5.65177 | GATATTGTTTAGCAT TCTTAAA ACCT TTTAAGA TTTTTTTGTAAGTGT UPA3_0028 29788 - 29042 - | putative ABC substrate-binding protein - iron TERM 38 29627 - 29659 + g 79 -10.2 -3.03243 | gap 1, opp_overlap 29625, overlap 29625 ATCATCAATAGTATT GTTATCATTAGCAAA TTCT TTTGCTAATGA-AAC TGTTGGACGATAAGT TERM 39 29750 - 29726 - G 75 -9.4 -2.70476 | gap 1, overlap 29725 29740 AGCGCTAACGATAAG GGGAATTGCCA AAAT TGGCAA-TCCC AAAAAAGACATGATT UPA3_0029 31914 - 29794 - | S1 RNA-binding domain-containing protein TERM 40 29965 - 29945 - G 71 -4.7 -4.78753 | overlap 29946 29948 CCAATATCAATAAAA CTACCAAAC TCT GTTTGGTTA CGAATTGTTCCTTGT TERM 41 29962 - 29948 - G 73 -8.6 -3.28327 | overlap 29946 29945 ATATCAATAAAACTA CCAAAC TCT GTTTGG TTACGAATTGTTCCT TERM 42 30508 - 30494 - G 75 -4.3 -5.1485 | overlap 30488 TAATCAATACAAAAA TCAAC TTTTT GTTGA AGAATGTTTTTATTA UPA3_0030 32024 - 34267 + | hypothetical protein TERM 43 35107 - 35123 + G 71 -6.7 -3.99352 | opp_overlap 35107 35105 ATGATAAAAGAAGTA TGATAAA GGT TTTATCA TTATATTTATTCGTT UPA3_0031 34662 - 35426 + | hypothetical protein TERM 44 35510 - 35488 - T 81 -6.4 -4.76312 | opp_overlap 35481 35488 GATAATATTTAAAAA TCTACTTTAC AAA ACAAAGTAGA TTAATAATTAGTTAT UPA3_0032 36045 - 35518 - | hypothetical protein UPA3_0033 36526 - 36053 - | hypothetical protein TERM 45 36353 - 36363 + g 70 -4 -5.15634 | overlap 36359 AGCTGGTTCATGAAC TCAA GCT TTGA TTTTTTCATCAAATA UPA3_0034 37643 - 36576 - | AAA domain-contain protein TERM 46 36636 - 36646 + g 74 -2.6 -5.79595 | ATTTTTATTTTCATC TAAT TCG ATTA TTTTTTCTTTTAAAA UPA3_0035 38487 - 37747 - | hypothetical protein TERM 47 38196 - 38163 - G 91 -12.1 -3.01712 | opp_overlap 38162 38163 38165, overlap 38165 CTGTTTCGCCTAACA TATTCTCAAAATAAT TATT ACTATTTTGAGAATA ATTACTCATAACAAA TERM 48 38163 - 38196 + g 78 -9.9 -2.52516 | opp_overlap 38163 38165, overlap 38162 38165 CTGTTTCGCCTAACA TATTCTCAAAATAAT TATT ACTATTTTGAGAATA ATTACTCATAACAAA TERM 49 38194 - 38165 - G 79 -10.3 -3.06696 | opp_overlap 38163 38162 38165, overlap 38163 GTTTCGCCTAACATA TTCTCAAAATAAT TATT ACTATTTTGAGAA TAATTACTCATAACA TERM 50 38213 - 38235 + g 71 -5.7 -4.43173 | opp_overlap 38217 TTACTCATAACAAAT TTAATTGCT AGTCC AGCAATTGA TTTTCCATTATTTTT UPA3_0036 39573 - 38740 - | hypothetical protein TERM 51 39062 - 39081 + g 78 -4.4 -5.40474 | ACTAATATGTTTGTG GTTTTATT TGAA AGTAAAAC TTTTTTTAAAAAAAT TERM 52 39081 - 39099 + g 72 -3.2 -5.30616 | opp_overlap 39081 39082 39083, overlap 39083 TATTTGAAAGTAAAA CTTTTTTT AAA AAAATAAG TTTTTGTTTAGGTCC UPA3_0037 40361 - 41749 + | AAA domain-contain protein TERM 53 41868 - 41897 + G 74 -7.9 -3.51232 | GTGCTGGACACGCAG GATTAGAAGCAGC TTTT GCAACTTCTAATC TTAATTTACAAACAG TERM 54 42422 - 42411 - g 73 -5.8 -4.58283 | TAATTCGTTTAAAAA CAGG GACT CCTG CAAGAATTAAAAAAG gidA 41825 - 43669 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 55 43785 - 43769 - g 73 -6.7 -4.09353 | TATTCAAAAATATAA TCAAATT TTT AATTTGA CAAGACTTGATAGTG gidB 43662 - 44372 + | methyltransferase GidB UPA3_0040 44395 - 44757 + | PQ loop repeat-containing protein UPA3_0041 44757 - 45173 + | hypothetical protein UPA3_0042 45340 - 47856 + | lipoprotein UPA3_0043 47879 - 50227 + | hypothetical protein TERM 56 52442 - 52458 + G 70 -8 -3.29263 | TTACCCAAACATTTT GCACCA GCAGG TGGTGC TTCTGGAACAAGTGT UPA3_0044 50258 - 52762 + | putative lipoprotein UPA3_0045 52799 - 55174 + | hypothetical protein TERM 57 56485 - 56456 - g 82 -8.7 -3.8709 | overlap 56445 56439 AAATTGCTTTACAAA CATTTGGCATTCA AATT CAAACGCCAAATG GTAAACCACGCGAAT UPA3_0046 55189 - 57792 + | putative lipoprotein TERM 58 58235 - 58247 + G 70 -2 -5.62552 | opp_overlap 58235, overlap 58222 AGTGATTGCAACAAT TAGT TTCTT ACTA TTTTTTACTTTTTTT UPA3_0047 57825 - 59312 + | hypothetical protein UPA3_0048 59299 - 59814 + | hypothetical protein UPA3_0049 59817 - 60731 + | hypothetical protein UPA3_0050 60721 - 61200 + | hypothetical protein TERM 59 62742 - 62766 + G 72 -7.3 -3.66095 | opp_overlap 62745 62750, overlap 62745 ATGAGTTTAATAATT TAACAAAAGAA AAT TTCTTTCGTTA TTTAAATAACACTTT UPA3_0051 61190 - 63355 + | hypothetical protein TERM 60 64630 - 64640 + G 73 -6.8 -4.11371 | opp_overlap 64629 AAGTACTAAGCTAAT TGCC TGA GGCA TTTTAAAAGGTGTTA UPA3_0052 63371 - 64906 + | ATP synthase subunit alpha 2 UPA3_0053 64906 - 66270 + | ATP synthase F1 subunit beta TERM 61 66298 - 66324 + F 100 -8.8 -5.46657 | opp_overlap 66298 TATATTAAATTTAAA CCTTGGTAACTA TAT TAATTACCGAGG TTTTTTATTAAAATG TERM 62 66324 - 66298 - f 79 -8.8 -3.8822 | opp_overlap 66298 TATATTAAATTTAAA CCTTGGTAACTA TAT TAATTACCGAGG TTTTTTATTAAAATG TERM 63 67932 - 67908 - g 85 -10.1 -3.76387 | AAAAACAGAAATTAA GCTTGTTGATA AAC TGTCAACAAGC GGTGATAATGCAGGA UPA3_0054 66535 - 69951 + | hypothetical protein TERM 64 70004 - 69949 - f 84 -9.4 -3.93597 | gap 1, opp_overlap 69953 69958 69995, overlap 69952 69953 69958 AAAAACGACACTAAA TAAGCAAAATGATAACCTCGTGTTCAA AAA TTAAACTAGGGGTTATCATTTTG-TTA AATGTTATAATAATA TERM 65 70002 - 69952 - f 82 -9.2 -4.0648 | opp_overlap 69953 69958 69995, overlap 69949 69953 69958 AACGACACTAAATAA GCAAAATGATAACCTCGTGTTCAA AAA TTAAACTAGGGGTTATCATTTTGT TAAATGTTATAATAA TERM 66 69953 - 70001 + F 93 -12.7 -3.2244 | opp_overlap 69952 69949 69953 69958, overlap 69958 69995 ACGACACTAAATAAG CAAAATGATAACCTCGTGTTCAA AAA TTAAACTAGGGGTTATCATTTTG TTAAATGTTATAATA TERM 67 70001 - 69953 - f 91 -12.7 -3.02803 | opp_overlap 69953 69958 69995, overlap 69952 69949 69958 ACGACACTAAATAAG CAAAATGATAACCTCGTGTTCAA AAA TTAAACTAGGGGTTATCATTTTG TTAAATGTTATAATA TERM 68 69958 - 69996 + F 77 -6.8 -4.71776 | opp_overlap 69953 69952 69949 69958, overlap 69953 69995 ACTAAATAAGCAAAA TGATAACCTCGTGTTCAA AAA TTAAACTAGGGGTTATCA TTTTGTTAAATGTTA TERM 69 69996 - 69958 - f 77 -6.8 -4.63107 | opp_overlap 69958 69953 69995, overlap 69953 69952 69949 ACTAAATAAGCAAAA TGATAACCTCGTGTTCAA AAA TTAAACTAGGGGTTATCA TTTTGTTAAATGTTA UPA3_0055 70046 - 70270 + | hypothetical protein TERM 70 71038 - 71013 - g 75 -4.1 -5.17488 | gap 1, opp_overlap 71013 71036, overlap 70982 AACATCAAAACAAAA TTCGACGTTCAA TAA TTGATCGT-GAA ATTATTTCTATTGAT TERM 71 71787 - 71777 - g 76 -4 -5.47821 | opp_overlap 71777 ATTGAGGCAAAAAAA TTGA GTT TCAA TATCTCACATGATTT rnr 70271 - 72436 + | ribonuclease R smpB 72636 - 73061 + | SsrA-binding protein TERM 72 73039 - 73051 + F 91 -9.1 -4.77698 | opp_overlap 73035 AAAAAAGAGATTTAG CGCGT GAA ACGCG TTTATTTTAATATTA TERM 73 74458 - 74446 - gf 74 -4.9 -4.99435 | TCTAAGAATGAAAAA TTAGA ATC TCTAA TAGCACAAAGGGCTC UPA3_0058 73081 - 74820 + | transport ATP-binding protein UPA3_0059 74795 - 76591 + | transport ATP-binding protein TERM 74 77276 - 77256 - g 90 -9.9 -4.05677 | opp_overlap 77254 AAATAATTTAAATAA TGTTTTTGA TCG TCAAAAACA CGCTATTTATAAACT UPA3_0060 76651 - 77445 + | hypothetical protein TERM 75 78738 - 78724 - g 71 -5 -4.7497 | opp_overlap 78724 TCCACTTACTAAAAA GAATCA GAG TGATCC TCGTTTTGTAGATCG lysS 77555 - 79036 + | lysyl-tRNA synthetase TERM 76 79094 - 79124 + T 95 -5.7 -6.4753 | opp_overlap 79094 79093 79112 AACTAATAACAATAC TACAAAATGTT AATAAATCA AACATTTTGTA TTTTTTTTTATTTCC UPA3_0062 79800 - 79324 - | nucleoside 2-deoxyribosyltransferase superfamily protein TERM 77 79934 - 79894 - R 86 -8 -4.87318 | gap 1, overlap 79925 TCCAAAAGTTAAAAA TAAAAAAAGATTGACT-GT GTTA ACTACTCAATCTTTTTTTA TGAAAAACGAAAAAT UPA3_0063 80234 - 79968 - | hypothetical protein pepF1 82085 - 80259 - | oligoendopeptidase F TERM 78 82751 - 82768 + G 73 -5.7 -4.63486 | overlap 82747 AAATGATGTTATTTA TCAAAAT AAAA ATTTTGA TTTTATTGGCCCAAT UPA3_0065 82173 - 83054 + | phosphotransacetylase TERM 79 83094 - 83063 - T 81 -6.1 -5.01042 | gap 1, opp_overlap 83063 83076 AACTTAAATTAAAAA CCACTAAAGC-TAA GTATT TTATACTTTAGTGG CTGATTTTAATTAAT UPA3_0066 83715 - 83101 - | hypothetical protein UPA3_0067 84409 - 83753 - | hypothetical protein UPA3_0068 85375 - 84500 - | iron(III) dicitrate transport ATP-binding protein fecE UPA3_0069 86450 - 85380 - | hemin transport system permease UPA3_0070 88436 - 86469 - | putative ABC substrate-binding protein - iron TERM 80 89360 - 89345 - g 74 -2.6 -5.72053 | gap 1, overlap 89347 TAATTAAACAAAAAA TG-GTTC CAT GAACACA AGTTGTTAAAATTAA UPA3_0071 88669 - 89997 + | hemolysin TERM 81 89993 - 89982 - T 71 -3 -5.53288 | TTTAATTGAAAAAAA GATT AATC AATC CTAAACAATGAGATA TERM 82 90002 - 90046 + T 72 -8.4 -2.84982 | gap 1, opp_overlap 90015, overlap 90015 ATCAATCCTAAACAA TGAGA-TAAAAAAACTAGTTT TTAA AAACTAGTTTTTTTAATTTTA ATTCTTCATACATTT TERM 83 90015 - 90032 + T 100 -7.1 -5.79588 | opp_overlap 90015, overlap 90002 AATGAGATAAAAAAA CTAGTTT TTAA AAACTAG TTTTTTTAATTTTAA TERM 84 90032 - 90015 - T 100 -7.1 -5.75478 | opp_overlap 90015 90002 AATGAGATAAAAAAA CTAGTTT TTAA AAACTAG TTTTTTTAATTTTAA UPA3_0072 91007 - 90015 - | hypothetical protein TERM 85 90154 - 90140 - GT 81 -7.2 -4.67968 | opp_overlap 90136 90133 TTAATAAACAAGAAA GTTCAT TTA ATGAAC AGTCTGGATTTTGTA trxB 91902 - 90973 - | thioredoxin-disulfide reductase lgt 92928 - 91921 - | prolipoprotein diacylglyceryl transferase TERM 86 91967 - 91984 + g 73 -7.1 -4.09508 | GGCTTTCTTAATTCT CCAAATT TATG AATTTGG TCTTTCTTTTTATAA TERM 87 92357 - 92367 + g 75 -3.2 -5.58074 | ATTCCTTCGAAAACA GCTG GCA TAGC TTTTTTTAATCATTG TERM 88 92682 - 92657 - G 82 -4.1 -5.79588 | gap 1 CTAAAATCAAAAAAA TCTTTAGC-ATC ACC GATTGCTAATGA TCATAAACGAGCACC hprK 93855 - 92929 - | HPr(Ser) kinase/phosphatase tilS 94862 - 93870 - | tRNA(Ile)-lysidine synthetase pth 95394 - 94834 - | peptidyl-tRNA hydrolase TERM 89 95659 - 95643 - g 70 -2.3 -5.61596 | opp_overlap 95643 ATTTCTATAAAAAAA TTAATTG AAG CAATAAA ATTTAGTACAACAAT dnaN 95616 - 96755 + | DNA polymerase III, beta subunit yaaA 96893 - 97111 + | S4 domain-containing protein YaaA TERM 90 98123 - 98102 - g 71 -5.9 -4.48072 | ACACTGATGATAAAA TCACTAAAG AAGA CGTTAGTGA AGGATTAACAGCAAT gyrB 97123 - 99075 + | DNA gyrase, B subunit gyrA 99097 - 101619 + | DNA gyrase, A subunit TERM 91 101660 - 101646 - f 77 -5.8 -5.07053 | opp_overlap 101636 101646 101645 101658 101659, overlap 101636 AACTACTTTAAAAAA TAAAGT TAT ACTTTA CTTTTTCTAAAAGTG UPA3_0082 101727 - 102197 + | competence/damage inducible protein CinA recA 102236 - 103240 + | protein RecA TERM 92 103431 - 103417 - g 73 -3.6 -5.40072 | overlap 103429 CTTCTTTTAAAAAAA TAGTTC AAA AAACTA AAGATTTAGAAGAAG UPA3_0084 103272 - 104693 + | HDOD domain-contain protein TERM 93 104746 - 104696 - T 75 -9.4 -2.63913 | opp_overlap 104701 104711, overlap 104711 TATTATTGGATAGTA TGAAATAATAAAAAAGAAGCAAGA CTA CCTTGTTTCTTTTTTATTATTTTC TTTTATATGTTTTTT TERM 94 104701 - 104741 + T 100 -15.2 -5.24647 | opp_overlap 104696 104711, overlap 104711 TTGGATAGTATGAAA TAATAAAAAAGAAGCAAG ACTAC CTTGTTTCTTTTTTATTA TTTTCTTTTATATGT TERM 95 104711 - 104731 + T 100 -6.2 -5.77677 | opp_overlap 104696 104711, overlap 104701 TGAAATAATAAAAAA GAAGCAAG ACTAC CTTGTTTC TTTTTTATTATTTTC TERM 96 104731 - 104711 - T 82 -4.7 -5.72254 | opp_overlap 104711 104701, overlap 104696 TGAAATAATAAAAAA GAAGCAAGA CTA CCTTGTTTC TTTTTTATTATTTTC UPA3_0085 104875 - 104720 - | hypothetical protein TERM 97 104761 - 104782 + g 90 -5.3 -5.67711 | CTTTTATATGTTTTT TATCTGAAT TTTT ATTTAGATA TTTTTGTTTTGTTTG UPA3_0086 105590 - 104892 - | deoxyguanosine kinase TERM 98 105389 - 105371 - G 77 -6 -4.7889 | opp_overlap 105370 ATAAAGACCCAAAAA GAACGTTA TTC TCACGTTC ATACATTTTTGCTAG TERM 99 105887 - 105858 - g 100 -13.9 -3.19026 | opp_overlap 105863 105866, overlap 105863 105866 TAGGTCAAGATTTAA TTAAACAAGCATT AATG AATGCTTGTTTAA ACAACAAAATTACAC TERM 100 105882 - 105863 - g 86 -9.4 -3.95817 | opp_overlap 105863 105866, overlap 105858 105866 CAAGATTTAATTAAA CAAGCATT AATG AATGCTTG TTTAAACAACAAAAT TERM 101 105863 - 105882 + G 82 -9.4 -3.53091 | opp_overlap 105863 105858 105866, overlap 105866 CAAGATTTAATTAAA CAAGCATT AATG AATGCTTG TTTAAACAACAAAAT TERM 102 106753 - 106767 + G 75 -4.4 -5.24515 | TAATTTTAATGGTAA TTATTT GTT AAATAA TTTTATTTCTTTATT TERM 103 106776 - 106811 + G 71 -5 -4.81249 | opp_overlap 106807, overlap 106807 106807 TAAATAATTTTATTT CTTTATTTAATAATTT AAAA AAATCATTAAATCAAG TTTTTGAATTTGAAA TERM 104 107026 - 107010 - g 75 -3.1 -5.58522 | TATACAAAACAAAAA TTTTTTA TCA CAAAAAA ATTAACAACCAGAAT UPA3_0087 105788 - 107581 + | DNA polymerase III subunits gamma and tau UPA3_0088 107589 - 107888 + | hypothetical protein UPA3_0089 107897 - 108502 + | recombination protein RecR UPA3_0090 108584 - 108826 + | hypothetical protein TERM 105 108860 - 108882 + F 79 -4.8 -5.62219 | TTTTTATTTTTTGAT TGAGCTGGTG GTA TGCTGGCTCA TTTTTTTAATATATT UPA3_0091 108923 - 110626 + | hypothetical protein TERM 106 111430 - 111420 - g 79 -4 -5.69793 | opp_overlap 111420 ACATCAAAGAAAAAA CAAT TGG ATTG TATGTTGAAGCAAAC ffh 111242 - 112588 + | signal recognition particle protein TERM 107 112592 - 112604 + F 83 -3.4 -6.17669 | opp_overlap 112592 TTATTTAGTTAAAAA TGGT TATAC ACCA TTTTTTTATTTTATT TERM 108 113019 - 113062 + G 71 -8.4 -2.82453 | opp_overlap 113001 113034, overlap 113018 113016 ATGACAACAATTTTT GCTTCACTAAAAGCATTAAA TATT TTTAAGGATTTTAGTGAAGA TGGTATTGATATTTT TERM 109 113995 - 113970 - g 72 -9.2 -2.68761 | opp_overlap 113969, overlap 113969 113967 ATGATTATTAAAGAG GTATTAAACG TAAGAT CGTTTAATAC ATATGCTAATAATTT UPA3_0093 112800 - 114587 + | hypothetical protein UPA3_0094 114587 - 115297 + | ABC transporter UPA3_0095 115419 - 118583 + | putative lipoprotein UPA3_0096 118858 - 118730 - | hypothetical protein UPA3_0097 119119 - 118970 - | hypothetical protein hsdR 123325 - 120188 - | type I site-specific deoxyribonuclease, HsdR TERM 110 121780 - 121800 + g 74 -9.1 -3.05832 | TTTTATCTATTCCAG TTGATGATG TTT CATCGTCAA TGTCATCTTTTTCGC UPA3_0099 123867 - 123346 - | type I restriction modification DNA specificity family protein UPA3_0100 124214 - 124005 - | hypothetical protein TERM 111 124996 - 125006 + G 77 -5.4 -5.00884 | GTGTGATTCAATTAC CAGA TAA TCTG TTTTTTGGAACAAGT hsdM 124347 - 125393 + | type I restriction-modification system, M subunit UPA3_0102 125397 - 126302 + | type I restriction modification DNA specificity family protein TERM 112 126339 - 126321 - f 75 -6.2 -4.56791 | ACTTAAAAATATAAA TTTATAAA GGG TTTATAAA TATGGATAATAAAAA UPA3_0103 126341 - 126904 + | hypothetical protein TERM 113 126916 - 126890 - T 100 -6.7 -5.76237 | opp_overlap 126890 126892 TATATAAATAAAAAA GAGATTCCTAA TTAAC TTAGTAATCTC TATCATTTAATTAAA UPA3_0104 127508 - 126942 - | hypothetical protein TERM 114 129271 - 129285 + G 70 -7.2 -3.54408 | GTATTTTATATGTAC TTGATG AAC CATCAA TTGGTTTGCATCAAC uvrA 127734 - 130565 + | excinuclease ABC, A subunit TERM 115 130710 - 130693 - g 80 -4.9 -5.29885 | AATCCAAAAATAAAA CCCAATA AAAT TATTGAG AAAATTGATCAAGCA UPA3_0106 130570 - 132234 + | putative lipoprotein hpt 132261 - 132881 + | hypoxanthine phosphoribosyltransferase TERM 116 134062 - 134072 + G 73 -6.8 -4.07687 | opp_overlap 134052 GATGACGCAATTTTA CGTC CTG GACG TTTTGACCGACAAAT TERM 117 134932 - 134911 - g 77 -7.4 -4.24075 | opp_overlap 134914, overlap 134888 ATTCACCAATACAAA CAATTACC ACCAGA GGTAATTG CTAATAAAAACAAAC UPA3_0108 132886 - 135051 + | ATP-dependent zinc metallopeptidase - cell division protein serS 135162 - 136418 + | seryl-tRNA synthetase TERM 118 136468 - 136423 - f 89 -10.1 -4.26202 | opp_overlap 136428, overlap 136428 ACATCTATTAATAAA TAAAATAAGAAGTTAACTTTA GTCA TAAAGCTAGCTTCTTATTTTT AATAAATACTGCTTG TERM 119 136428 - 136463 + F 95 -10 -4.75372 | opp_overlap 136423 136428 TATTAATAAATAAAA TAAGAAGTTAACTTTA GTCA TAAAGCTAGCTTCTTA TTTTTAATAAATACT TERM 120 136463 - 136428 - f 100 -10 -5.12172 | opp_overlap 136428, overlap 136423 TATTAATAAATAAAA TAAGAAGTTAACTTTA GTCA TAAAGCTAGCTTCTTA TTTTTAATAAATACT TERM 121 136594 - 136607 + F 72 -2.4 -5.74086 | opp_overlap 136594 AAAAAATAAATTAAA CTCT AAAAAA AGAG TTTTTTCTTTGCTTT TERM 122 136776 - 136791 + F 100 -7.6 -5.64328 | opp_overlap 136776 136775 136778 TCAATTTTGAAATAT CATGAG TTTA CTCATG TTTTATTTTTTTATT TERM 123 137347 - 137336 - g 75 -4.4 -5.1361 | AGAAATGCGAAAAAA CCAA TATC TTGG CACACTTGATGAACT UPA3_0110 136821 - 138380 + | spermidine/putrescine transport ATP-binding protein UPA3_0111 138364 - 139371 + | spermidine/putrescine transport system permease UPA3_0112 139358 - 140212 + | spermidine/putrescine transport system permease TERM 124 142126 - 142167 + G 81 -9.9 -3.22924 | gap 1, overlap 142134 142137 142163 TGAAGAACACGCTGC TTTAAACGCGACATTAAGAA AAA TTTTTAATGTT-CGTTTAAA TATTAATACTTTAGA UPA3_0113 140216 - 142252 + | putative lipoprotein UPA3_0114 142350 - 142952 + | hypothetical protein TERM 125 142980 - 142950 - f 78 -9.2 -3.56836 | opp_overlap 142955, overlap 142938 142955 AAATCATTTGTTAAA TAAAATACCAAGTC TAA AACTTGGTATTTTT CACAGATAAGTTAAT TERM 126 142955 - 142975 + F 86 -8.4 -4.58395 | opp_overlap 142950 142955 ATTTGTTAAATAAAA TACCAAGT CTAAA ACTTGGTA TTTTTCACAGATAAG TERM 127 142975 - 142955 - f 91 -9.1 -4.87133 | opp_overlap 142955, overlap 142950 ATTTGTTAAATAAAA TACCAAGTC TAA AACTTGGTA TTTTTCACAGATAAG TERM 128 143165 - 143149 - g 100 -5.3 -5.9663 | opp_overlap 143149 AAATATTAAAAAAAA TAAAATT TTT AATTTTA ATAAAAAATTCAATC TERM 129 143185 - 143174 - g 75 -3 -5.4756 | AATTTTAATAAAAAA TTCA ATCC TGAA CAAGAAATTAATTCA TERM 130 143374 - 143390 + G 89 -8.1 -4.79053 | TACATATTATAATTT CGATTTT GAA AAAATCG TTTATTTTGATGTTT UPA3_0115 143015 - 144142 + | hypothetical protein TERM 131 144560 - 144546 - g 90 -8.6 -4.67755 | opp_overlap 144546, overlap 144555 ATATTTAGTTAAAAA GGATGA ATA TCATCC TTTTGATGAAAGTGC TERM 132 144546 - 144560 + G 85 -8.6 -4.26076 | opp_overlap 144546 144555 ATATTTAGTTAAAAA GGATGA ATA TCATCC TTTTGATGAAAGTGC UPA3_0116 144166 - 145113 + | pseudouridine synthase TERM 133 147467 - 147452 - f 72 -7.6 -3.62096 | opp_overlap 147451 GGGGAGTAGGCCAAA CCGAAT TTCG ATTCGG GGTTGTAGGACTACA TERM 134 150262 - 150286 + F 76 -3.6 -5.71983 | opp_overlap 150262 ATCGCTACGCTAAAA CCAACCTT GAAATTTAA GAGGTTGG TTTTTTTATACTTAA folA 150399 - 150869 + | dihydrofolate reductase TERM 135 151370 - 151343 - g 73 -5.7 -4.72272 | GTGGTTTACTAAAAA TTATGAACAAC TGTAAT GTTGATCATAA AAATACTTTATTGAT UPA3_0120 150877 - 151557 + | phosphoglycolate phosphatase TERM 136 151703 - 151722 + T 100 -6.5 -6.01369 | opp_overlap 151703 TTAATAAATAAAAAA GCAATTC TATTAT GAATTGC TTTTTTTATTCTTTA TERM 137 151722 - 151703 - T 100 -6.5 -5.80003 | opp_overlap 151703 TTAATAAATAAAAAA GCAATTC TATTAT GAATTGC TTTTTTTATTCTTTA upp 152375 - 151752 - | uracil phosphoribosyltransferase TERM 138 152470 - 152494 + r 74 -8.7 -3.23235 | opp_overlap 152475, overlap 152475 152493 ACTTAATAAAATGAA AAAAACTAGCA AAA TGCTAGTTTTA TTACATTAATATATG TERM 139 152489 - 152475 - R 100 -8.6 -5.81622 | opp_overlap 152470 152475 ATAAAATGAAAAAAA CTAGCA AAA TGCTAG TTTTATTACATTAAT TERM 140 152475 - 152489 + r 86 -8.6 -4.72631 | opp_overlap 152475, overlap 152470 ATAAAATGAAAAAAA CTAGCA AAA TGCTAG TTTTATTACATTAAT TERM 141 152609 - 152625 + r 76 -6.7 -4.49958 | opp_overlap 152609 152608 152611 152616, overlap 152616 ATTATAAATAAAATT GATTAAA TTT TTTAATC TTTATTTCATAAAAT tyrS 153867 - 152620 - | tyrosyl-tRNA synthetase TERM 142 153549 - 153561 + g 77 -4.9 -5.27023 | GAGAATTAGTAAATT TTTCA AGT TGAAA TTTTATTTTTGCAAT UPA3_0124 154006 - 154908 + | ABC transporter secA 154925 - 157438 + | preprotein translocase, SecA subunit TERM 143 158914 - 158900 - g 72 -4.3 -4.9445 | opp_overlap 158900, overlap 158894 ATAATGAATTAAAAA CACTA GAGCG TAGTG TTATTATCAATAAAT uvrB 157441 - 159441 + | excinuclease ABC, B subunit TERM 144 159822 - 159804 - g 88 -5.4 -5.48825 | GATGATTTAAAAAAA TTTGATCA AGA TAATCAAA ATGCTAGTGTCGATT TERM 145 161319 - 161303 - g 72 -8.1 -3.44527 | opp_overlap 161276 161274 161291 TATTTATGATGATAA CATCAAT ATA ATTGATG AATATAAAAATAAAA ligA 159525 - 161546 + | DNA ligase, NAD-dependent TERM 146 161829 - 161811 - g 83 -4 -5.92399 | opp_overlap 161814 TAACAAAAGAAAAAA CAATTTTT AAA AAAAATTA TAAAAAAAAACATAG TERM 147 162093 - 162109 + G 76 -3.8 -5.5353 | TCGGAACAATGGTTT TAAGTT TAAAT AACTTA TTTTTTGTTACTATG UPA3_0128 161783 - 162478 + | hypothetical protein cysS 162492 - 163802 + | cysteinyl-tRNA synthetase TERM 148 164270 - 164298 + G 82 -10.5 -2.91395 | opp_overlap 164270 164277, overlap 164277 ATTTATCAAATACAA TAAAAAACCTTCA AGA TGAAGGTTTTTGA GTTTATGCGACAAGT TERM 149 164298 - 164270 - g 93 -10.5 -3.86653 | opp_overlap 164270 164277, overlap 164277 ATTTATCAAATACAA TAAAAAACCTTCA AGA TGAAGGTTTTTGA GTTTATGCGACAAGT TERM 150 164277 - 164291 + G 93 -8.6 -4.84529 | opp_overlap 164277 164270, overlap 164270 AAATACAATAAAAAA CCTTCA AGA TGAAGG TTTTTGAGTTTATGC TERM 151 164291 - 164277 - g 100 -8.6 -5.66338 | opp_overlap 164270 164277, overlap 164270 AAATACAATAAAAAA CCTTCA AGA TGAAGG TTTTTGAGTTTATGC UPA3_0130 163804 - 164523 + | RNA methyltransferase UPA3_0131 165716 - 164532 - | putative lipoprotein UPA3_0132 168982 - 165728 - | hypothetical protein TERM 152 167171 - 167183 + g 82 -6.3 -5.03145 | TAATGAAATTTGAGA CCTTA ACA TAAGG TTTTTTCACAGGTTA TERM 153 169111 - 169065 - R 100 -12 -4.04764 | opp_overlap 169064 169063 169069, overlap 169069 AAAAGAATTGATAAA TAAAGATAAAACGGCGTT TTGTTAAAATC AACACCGTTTTATCTTTA AATCTTTTTGTTAAT TERM 154 169107 - 169069 - R 86 -8.4 -4.59089 | opp_overlap 169064 169063 169069, overlap 169065 GAATTGATAAATAAA GATAAAACGGCGTT TTGTTAAAATC AACACCGTTTTATC TTTAAATCTTTTTGT UPA3_0133 169414 - 169109 - | hypothetical protein TERM 155 169554 - 169517 - R 100 -8.7 -5.75945 | opp_overlap 169517 169524 169526, overlap 169526 ATTTTTTAAAAAAAA TAAAAAAAACAAGAAGA AAAT TCCTCTTGTCTTTATTA TTTTATCGATCTTTA TERM 156 169545 - 169526 - R 100 -7.2 -6.47325 | opp_overlap 169526 169524 169517, overlap 169517 AAAAAATAAAAAAAA CAAGAAGA AAAT TCCTCTTG TCTTTATTATTTTAT atpC 169967 - 169557 - | ATP synthase F1, epsilon subunit atpD 171361 - 169967 - | ATP synthase F1, beta subunit atpG 172248 - 171388 - | ATP synthase F1, gamma subunit TERM 157 171475 - 171490 + g 72 -3.2 -5.28176 | overlap 171476 TAATTTATAATTTTC AGCCAA TGCT TTGGCA TTTTTTGTAGCTGCA UPA3_0137 173056 - 172250 - | hypothetical protein TERM 158 173011 - 173031 + g 71 -4.8 -4.89562 | gap 1, overlap 173006 173011 173012 GTTTAATTTTTGGAA G-TTTGCTG AATT CAGCAAAGC TTTTATTCATTTTAA TERM 159 173012 - 173029 + g 70 -8.5 -2.69639 | overlap 173011 173011 173006 TTTAATTTTTGGAAG TTTGCTG AATT CAGCAAA GCTTTTATTCATTTT UPA3_0138 175455 - 173056 - | ATP synthase F1, alpha subunit TERM 160 173760 - 173778 + g 72 -3.2 -5.33331 | overlap 173743 CAAGAATTTCTTGTG GTTCAA CGAAATC TTGAAC TTTTTCTTCTATTTG TERM 161 173926 - 173950 + g 93 -10.9 -3.9122 | TGTTTGTTCAGCTTC TTCACAAGGTT TAA AATCTTGTGAA TTATTTAAGAAACTG UPA3_0139 175757 - 175458 - | ATP synthase delta subunit atpH 176306 - 175767 - | ATP synthase F1, delta subunit atpF 176927 - 176310 - | ATP synthase F0, B subunit TERM 162 176464 - 176476 + g 70 -6.3 -4.08216 | opp_overlap 176471 TTTTCTCTACGTTCA TTAGC AAT GCTAA TTTTAGCAGAACTAA UPA3_0142 177325 - 176996 - | ATP synthase F0, C subunit atpB 178201 - 177374 - | ATP synthase F0, A subunit UPA3_0144 178601 - 178227 - | hypothetical protein TERM 163 178329 - 178317 - G 74 -6.3 -4.43397 | TGTTAAAACAAATAA TGAGA TGG TCTCA AAAATAGATTGATAA TERM 164 179000 - 179016 + G 73 -6.7 -4.09243 | TAAAACGGATGTTTT TTTGATT ATA AATCAAA TTTTAAAACAATATA UPA3_0145 178899 - 179609 + | hypothetical protein TERM 165 180408 - 180394 - g 71 -5.8 -4.5448 | CACTGACAAAAACAA TTGAAT GAT ATTCAA GAAAATTTAAAAGAA UPA3_0146 179671 - 182616 + | p115 protein ftsY 182619 - 183674 + | signal recognition particle-docking protein FtsY UPA3_0148 183664 - 183963 + | YlxM family protein TERM 166 184019 - 183984 - T 100 -10.8 -5.50723 | gap 1, opp_overlap 183984, overlap 183965 TTATTAAAATAAAAA GAAAGAAACGGTTATTA AAT TAACAAC-GTTTCTTTC TTTTTTTAATTTTGA TERM 167 183984 - 184019 + T 100 -8.6 -5.79588 | gap 1, opp_overlap 183965 183984 TTATTAAAATAAAAA GAAAGAAACGGTTATTA AAT TAACAAC-GTTTCTTTC TTTTTTTAATTTTGA UPA3_0149 187834 - 184067 - | hypothetical protein TERM 168 184567 - 184588 + g 71 -6.1 -4.3898 | CCTCTAATGGTTTTA TATTTTTTA AACT TAAAAAATA TTTTATAACACTAGT TERM 169 185368 - 185346 - G 72 -4.3 -4.95167 | CAATTAACAATAAAA TCATATCTT CCAAT AAAATATGA CGGTTGATTTGAATT TERM 170 185611 - 185627 + g 100 -10.9 -4.9725 | opp_overlap 185608 185605 185613 AAATAGGAATTATCA CATGCGA TCT TCGCATG TTTTTATCTACAAGT TERM 171 185787 - 185815 + g 73 -9.1 -2.81768 | overlap 185786 TTTTTTAATCCTTCA TCTTTAATTGC TAAATGT GCAATTAAAGA ATTTAGATGATATGA TERM 172 187624 - 187665 + g 76 -6.3 -4.64486 | opp_overlap 187638, overlap 187621 187628 187631 AGGTTATAGTAGTAT TTGGTGATTTAAAATTAAA TTTT TTTAATTTTAAATTAATAA TTGTTTTATTTTGAT TERM 173 187628 - 187661 + g 72 -9.3 -2.50563 | opp_overlap 187638, overlap 187624 187621 187631 TATAGTAGTATTTGG TGATTTAAAATTAAA TTTT TTTAATTTTAAATTA ATAATTGTTTTATTT TERM 174 187631 - 187658 + g 77 -8.8 -3.36965 | opp_overlap 187638, overlap 187628 187624 187621 AGTAGTATTTGGTGA TTTAAAATTAAA TTTT TTTAATTTTAAA TTAATAATTGTTTTA TERM 175 188117 - 188101 - R 71 -8.7 -2.62396 | opp_overlap 188115, overlap 188103 CAGTTGGTTAGAGCA CACCCCT GAT AAGGGTG AGGTCGGTGGTTCGA TERM 176 188263 - 188245 - R 95 -9.6 -5.01535 | opp_overlap 188245 TTATAATTATAAAAA CCAAACCA AAA CGGTTTGG TTTTTTCTTCTCTAA TERM 177 188245 - 188263 + r 100 -8.9 -5.60689 | opp_overlap 188245 TTATAATTATAAAAA CCAAACC AAAAC GGTTTGG TTTTTTCTTCTCTAA UPA3_0152 189002 - 188328 - | hypothetical protein TERM 178 188669 - 188683 + g 71 -2.9 -5.58522 | ATTGTGATTTTTTAA TTTCA ACAAC TGAAA TTTTTGTTTTATCTG UPA3_0153 189063 - 189830 + | integrase-recombinase protein TERM 179 190273 - 190295 + G 74 -9.2 -3.05914 | GAAATCCAATCAGTG CCATCTTGAA AGT TTCAAGCTGG TGTATATGATTACAT UPA3_0154 189820 - 190446 + | hypothetical protein UPA3_0155 190430 - 190603 + | hypothetical protein UPA3_0156 190605 - 190946 + | hypothetical protein UPA3_0157 190952 - 191248 + | hypothetical protein UPA3_0158 191270 - 191491 + | hypothetical protein UPA3_0159 191448 - 191630 + | hypothetical protein UPA3_0160 191623 - 191859 + | hypothetical protein TERM 180 191921 - 191906 - g 93 -4.8 -5.99154 | GATGAAACAAAAAAA GTAATT AGCA AATTAC AACAAACAAATAATT UPA3_0161 191849 - 192184 + | hypothetical protein bet 192184 - 192840 + | phage recombination protein Bet TERM 181 192999 - 193015 + G 70 -7.3 -3.53811 | opp_overlap 192999 TTAGTGAATATTTAA TGGAACG TAT TGTTCCA TTTGAAAACAATAAA UPA3_0163 192830 - 193519 + | hypothetical protein UPA3_0164 193509 - 193970 + | hypothetical protein UPA3_0165 193952 - 194629 + | hypothetical protein TERM 182 194699 - 194718 + T 78 -4.3 -5.83211 | opp_overlap 194699 CTAGAATAAAAAAAG GTGTTAG TTGAAT CTAGCAC TTTTTTATTTTAATA TERM 183 194769 - 194747 - T 72 -8 -3.42228 | opp_overlap 194732 194753, overlap 194746 TAATTTAAAACAAAT TATATATTAT GTT ATAATATATA CACTAGTACACGTTG TERM 184 194930 - 194941 + T 74 -7.2 -4.11039 | opp_overlap 194930 TTTTTGCTTAAAGTA CGCC CAAT GGCG TTGTTTAATTAATCT TERM 185 195200 - 195182 - T 100 -7.4 -5.79595 | opp_overlap 195181 195182 195184 GTTGAAAACAAAAAA CACGCTCC GTT AAAGCGTG CTTAATGTGTTAGTT TERM 186 195521 - 195501 - T 71 -3.2 -5.56264 | opp_overlap 195502, overlap 195502 TTGAAATATAAAAAA GCCACCCT TTAGC AAGGTGGT TTTTATTTTGTCTAA TERM 187 195502 - 195520 + T 79 -4.5 -5.58522 | opp_overlap 195501 195502 TGAAATATAAAAAAG CCACCCT TTAGC AAGGTGG TTTTTATTTTGTCTA UPA3_0166 195976 - 195533 - | hypothetical protein UPA3_0167 196490 - 195945 - | hypothetical protein UPA3_0168 196926 - 196480 - | hypothetical protein UPA3_0169 199174 - 196931 - | hypothetical protein TERM 188 198735 - 198754 + g 78 -4.4 -5.39721 | TAAATACCATCATCG TTAAAGTT AGCA AACTTTGA TTTTTTATATAATCC UPA3_0170 199851 - 199174 - | hypothetical protein TERM 189 199308 - 199322 + g 71 -8.6 -3.11302 | overlap 199307 TTGGTGCAAATTTCA GCATTG TAG CAATGC GTTTTGGAATATTAC TERM 190 199570 - 199581 + g 75 -3 -5.56263 | ATCTGTTAAATGTTT GATA ATGC TATC TTTTTGTTTTGTCGT TERM 191 199991 - 199977 - R 100 -7.1 -5.8187 | opp_overlap 199977 TAGTTAACAAAAAAA GGGCA TTATT TGCCC TTTCTCCTTTCTTTG TERM 192 199977 - 199991 + r 76 -7.1 -4.23391 | opp_overlap 199977 TAGTTAACAAAAAAA GGGCA TTATT TGCCC TTTCTCCTTTCTTTG UPA3_0171 201199 - 200012 - | hypothetical protein TERM 193 201186 - 201198 + g 75 -4.1 -5.1925 | CTTTTTCAAGTGTTT TGGTT ATC AGCCA TTTTTTCAATTCTCC UPA3_0172 201541 - 201215 - | hypothetical protein UPA3_0173 201912 - 201544 - | hypothetical protein UPA3_0174 205405 - 201923 - | hypothetical protein UPA3_0175 206762 - 205398 - | hypothetical protein TERM 194 206210 - 206229 + g 76 -3.5 -5.61881 | opp_overlap 206208 206210, overlap 206198 206197 CTTTTGTGCACAATA CGCCGTA GTTGTG TACGACG TTTTTGTTTTTAAAA UPA3_0176 208197 - 206752 - | PBSX family phage terminase large subunit TERM 195 207580 - 207598 + g 78 -6.8 -4.72029 | opp_overlap 207580 TTTTTTATCTACAAC GCTATATT CAT AATATGGC TTTTGTTGGATTGAG TERM 196 207803 - 207781 - G 74 -4.8 -5.00616 | CGCTTCTTCAAAAAA CGCAAAAACA TAA CGTGCTTGCG TTCACAAACGAAATC UPA3_0177 208997 - 208554 - | hypothetical protein TERM 197 209323 - 209333 + r 72 -2.6 -5.84011 | opp_overlap 209323 AGTATATTTATGAAT TATA TAT TATA TTTTTATTTTTTATT UPA3_0178 210040 - 209441 - | hypothetical protein UPA3_0179 210417 - 211916 + | putative lipoprotein UPA3_0180 214043 - 211971 - | hypothetical protein TERM 198 213624 - 213614 - G 79 -4 -5.76949 | opp_overlap 213614 213608 213603 CAGGTTGAAAAAAAA TGAT TTT ATCA TTTTTATCAATTAAT TERM 199 214106 - 214084 - R 91 -5.7 -5.76633 | opp_overlap 214084 214087 TTATATATAAAAAAA TAATGTTCA ATAAA CGAACATTA TTTAAAAAAACTTTA UPA3_0181 214994 - 214119 - | HAD family hydrolase trpS 216021 - 215020 - | tryptophanyl-tRNA synthetase TERM 200 215300 - 215316 + g 76 -6.7 -4.51765 | ACTCCTGGTTGTAAT GTTAAAT CAT ATTTAAC TTTGTTTAAATTATC TERM 201 215334 - 215348 + g 88 -5.8 -5.43866 | overlap 215346 TGTTTAAATTATCTG TTAAAG CTC CTTTAA TTTTTTTAAAAATTA TERM 202 216386 - 216363 - g 70 -5.4 -4.63928 | opp_overlap 216356 ATATTACTTCAAAAA CTTTTTTAGA TTTA TCTACAAAAG AATTATTAAATTTAA TERM 203 216422 - 216392 - g 73 -8.6 -3.14625 | opp_overlap 216392 216397, overlap 216390 216389 216386 216397 TCTACAAAAGAATTA TTAAATTTAATTCA AAA TGATTTAAATTTAA TTCGTCGCCCTTTAA TERM 204 216392 - 216422 + G 73 -8.6 -3.17714 | opp_overlap 216392 216390 216389 216386 216397, overlap 216397 TCTACAAAAGAATTA TTAAATTTAATTCA AAA TGATTTAAATTTAA TTCGTCGCCCTTTAA UPA3_0183 216146 - 216532 + | hypothetical protein TERM 205 217204 - 217231 + G 79 -10.2 -3.05844 | opp_overlap 217204 217211 217225, overlap 217211 CTATTGATGGGAATA TCATTAATTTTA GCGA TAAAATTAATGA TATTAAAGTAGAAAC TERM 206 217231 - 217204 - g 79 -10.2 -3.06492 | opp_overlap 217204 217211, overlap 217211 217225 CTATTGATGGGAATA TCATTAATTTTA GCGA TAAAATTAATGA TATTAAAGTAGAAAC UPA3_0184 216522 - 217334 + | NAD(+)/NADH kinase family protein UPA3_0185 217337 - 217717 + | hypothetical protein UPA3_0186 217798 - 218019 + | hypothetical protein UPA3_0187 218500 - 218021 - | hypothetical protein TERM 207 218114 - 218081 - G 77 -8.3 -3.48593 | opp_overlap 218083, overlap 218083 218109 TATTTGTTCACATAA CATGACTTTTGCTAA GCCA TGAGCAAAAGTCATT TTTGACATAGATAAA TERM 208 218112 - 218083 - G 86 -10.9 -3.31726 | opp_overlap 218083, overlap 218081 218109 TTTGTTCACATAACA TGACTTTTGCTAA GCCA TGAGCAAAAGTCA TTTTTGACATAGATA TERM 209 218083 - 218112 + g 100 -10.9 -4.62783 | opp_overlap 218083 218081 218109 TTTGTTCACATAACA TGACTTTTGCTAA GCCA TGAGCAAAAGTCA TTTTTGACATAGATA tpiA 218563 - 219279 + | triosephosphate isomerase TERM 210 219882 - 219872 - g 70 -5.4 -4.68424 | GAACGTACCCAAAAA GCAT TTA ATGC AATGTTTGTTAAGCA TERM 211 220658 - 220678 + G 73 -8.5 -3.14792 | overlap 220657 GTTAATGATGTTTGG TTTATTATC ACA GATAATAAA GTTATTTTAAATTCG gpmI 219296 - 220804 + | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase TERM 212 221024 - 221036 + G 74 -6.3 -4.5493 | opp_overlap 221024 221023 ATATGCTTATAAAAT TGATC CTC GATCA TTATTTTATTTAAAT UPA3_0190 220851 - 221726 + | hypothetical protein eno 221829 - 223151 + | phosphopyruvate hydratase TERM 213 223305 - 223287 - gf 73 -7.6 -3.81 | AGGACTGTACAATAA TTTAATTG AAC CAATTAAA GATAAACGTGTTTTT UPA3_0192 223120 - 224085 + | phosphofructokinase family protein TERM 214 225342 - 225358 + G 70 -5.3 -4.59591 | opp_overlap 225342 TTAGTTTATGATATA TTAAAAT ATG ATTTTAA TTTTAATATTTTATT TERM 215 225493 - 225462 - g 77 -7.6 -4.20953 | opp_overlap 225463 225482, overlap 225459 TTAAAACAAGAAGAA TTATTAAAATCATT TAAT ATTGATTTTAATAA TCATGAATTTTTATT pyk 224097 - 225521 + | pyruvate kinase TERM 216 225759 - 225739 - g 71 -6.9 -3.84246 | opp_overlap 225739 225743 225750, overlap 225750 TTTTGAAGGACCAAA TCTACTTGA AAT TCAAGTTGA ATCTTTTAAACGCTT TERM 217 227218 - 227199 - g 72 -8 -3.30243 | opp_overlap 227185 227182 227198 227202, overlap 227202 ACTTAGTTGCTACAA CAAGTTAT ATTT ATAACTTG AATTATGAAATTGGT TERM 218 228011 - 227997 - g 73 -8.6 -3.2613 | opp_overlap 227997 AACAAGTAGTATCAA TTGCTG CAT CAGCAA TTCCATTTATTGAAA TERM 219 227997 - 228011 + G 75 -8.6 -3.37761 | opp_overlap 227997 AACAAGTAGTATCAA TTGCTG CAT CAGCAA TTCCATTTATTGAAA TERM 220 228115 - 228097 - g 77 -9.6 -3.06399 | TTTAATTAAACCATA TGCCCCTA TTG TAGGGACA GGTACAGAATTTAAA TERM 221 228222 - 228204 - g 93 -7.6 -5.1287 | TTGATAGTCAAAAAA TTATCATT AGA AATGATAA TGATAAATTAGATGA rpoB 225644 - 229948 + | DNA-directed RNA polymerase, beta subunit TERM 222 231743 - 231722 - g 70 -2.3 -5.62288 | TTAACAAAAGAAAAA TTTCCACAA GTAA TTGAAGAAA TGATGGCTAAAGATC TERM 223 232547 - 232531 - g 70 -2.4 -5.55664 | CTATGACCAAAAAAA TAATAA TGGTG TTATTA AAGATACAATTGAAA rpoC 229970 - 233887 + | DNA-directed RNA polymerase, beta' subunit TERM 224 233929 - 233955 + F 100 -10.3 -5.08878 | TAACTTTGATATTTA CGTAGATGTGT GCTAA ACACATTTACG TTTTATTTATATATT TERM 225 234239 - 234223 - g 72 -8.1 -3.3233 | overlap 234220 234221 GAAAAAAAACAATTA GAAAAAG TCA CTTTTTC AACATCTATTACCCC UPA3_0196 234010 - 234531 + | putative lipoprotein TERM 226 234600 - 234547 - T 93 -10.8 -4.47163 | opp_overlap 234555 234560 234562 234587, overlap 234550 234562 AATTAAAATAAATAA TGATTAAATAAAAAATCTGATGGT TAACAG ACTATCAGATCTTTTATTTAATAA GAGTCTATTTAGCTT TERM 227 234597 - 234550 - T 91 -12.5 -3.16872 | opp_overlap 234555 234560 234562 234587, overlap 234547 234562 TAAAATAAATAATGA TTAAATAAAAAATCTGATGGT TAACAG ACTATCAGATCTTTTATTTAA TAAGAGTCTATTTAG TERM 228 234555 - 234592 + T 77 -8.7 -3.74251 | opp_overlap 234550 234547 234562, overlap 234560 234562 234587 TAAATAATGATTAAA TAAAAAATCTGATGGTT AACA GACTATCAGATCTTTTA TTTAATAAGAGTCTA TERM 229 234585 - 234562 - T 75 -3.9 -5.68438 | opp_overlap 234560 234555 234562, overlap 234550 234547 TGATTAAATAAAAAA TCTGATGGT TAACAG ACTATCAGA TCTTTTATTTAATAA TERM 230 234562 - 234585 + T 71 -6.8 -4.08958 | opp_overlap 234562 234550 234547, overlap 234560 234555 TGATTAAATAAAAAA TCTGATGGTT AACA GACTATCAGA TCTTTTATTTAATAA UPA3_0197 235459 - 234605 - | hypothetical protein TERM 231 235314 - 235337 + g 71 -6.8 -3.92342 | AATATTTGTTTCAAT TGTTCTTGAC TAAC GTCAATAACA TCTTTTAATTCTTTT TERM 232 235854 - 235841 - g 73 -3.9 -5.42605 | opp_overlap 235841 235845, overlap 235845 TTAATAAAAATAAAA TTATC ATTA GATAA TGCTTTTAAAGGTTT TERM 233 236080 - 236051 - g 73 -3.7 -5.41359 | opp_overlap 236051 236073 AATGAAATTAAAAAA TCCAAATTAATGA ACTA TGATTCATTTGGA ATGTTGTGTTCACAA UPA3_0198 235604 - 236197 + | tRNA-binding domain-containing protein prs 236217 - 237209 + | ribose-phosphate diphosphokinase UPA3_0200 237216 - 237755 + | primase-like protein UPA3_0201 237759 - 238598 + | hypothetical protein TERM 234 238802 - 238839 + G 73 -8.7 -3.16039 | ATTTAAAAGTTCCAT TTGCTTTTTTCAATCCA GTTG TTGATTCAAAAAAGCAA TTAATGCAAATCATT UPA3_0202 238600 - 239826 + | AAA family ATPase TERM 235 240057 - 240029 - g 100 -9.7 -5.17507 | opp_overlap 240029 AAAATCCAACAAAAA GCTTTTGAAGAAA ACA TTTCTCCCAAAGC TTTGGTCGATCGTAA TERM 236 240029 - 240057 + G 72 -7.5 -3.77196 | opp_overlap 240029 AAAATCCAACAAAAA GCTTTTGAAGAAA ACA TTTCTCCCAAAGC TTTGGTCGATCGTAA TERM 237 240070 - 240080 + G 71 -2.6 -5.59564 | AGCTTTGGTCGATCG TAAT TCA ATTA TTTTTTTAAATTTAT metG 239846 - 241411 + | methionyl-tRNA synthetase TERM 238 241903 - 241879 - g 72 -8.1 -3.33711 | opp_overlap 241884, overlap 241884 TATTTATAAACTCAA TAAAACTAATC ATG AATTAGTTTTA ACAAAAGACAATATT TERM 239 242030 - 242049 + G 84 -5.7 -5.1925 | gap 1, opp_overlap 242030 242029 ACAGGTGGAGCAAAT GCCTCAGG GACAG CC-GAGGC TTTTTTGACTTCTAA UPA3_0204 241499 - 242671 + | hypothetical protein TERM 240 242731 - 242711 - g 70 -2 -5.62219 | overlap 242714 AACAGACTAAAAAAA TCATTTTT AACAA AAAAATAA AAGATAAACTAGCTA TERM 241 243403 - 243421 + G 72 -9 -2.62111 | opp_overlap 243401, overlap 243402 TTAAGTGATCAAGGT TACCAAAA CAT TTTTGGTA CTGGTTTTTTACAAA UPA3_0205 242671 - 244866 + | phosphate transport system permease TERM 242 245168 - 245156 - g 76 -6.3 -4.72631 | opp_overlap 245156 245155 ATGAATCGAACAAAA CATGT TCT ACATG ATTTAAATTTGGATA pstB 244871 - 245860 + | phosphate ABC transporter, ATP-binding protein UPA3_0207 245884 - 246540 + | PhoU family transcriptional regulator TERM 243 246558 - 246573 + F 85 -4.7 -6.04953 | opp_overlap 246558 AATCATTAGCAAAAA CTAGG CATTTA CCTAG TTTTTTTATTTATAT TERM 244 246573 - 246558 - f 74 -5.4 -4.7871 | opp_overlap 246558 AATCATTAGCAAAAA CTAGGC ATTT ACCTAG TTTTTTTATTTATAT UPA3_0208 246700 - 246924 + | hypothetical protein TERM 245 248753 - 248737 - g 78 -7.3 -4.39696 | opp_overlap 248729 248737 GGTGAAACTAATAAA GCAACTA ATG CAGTTGC TGATATTAGTTTAAT UPA3_0209 246928 - 249057 + | copper-transporting P-type ATPase TERM 246 249051 - 249066 + T 71 -3.4 -5.40004 | TGAGGCTATGTTACA TAAATA ATTT TATTTA TTTTTTAATTTACTA TERM 247 249080 - 249134 + T 73 -9.3 -2.50113 | gap 2, opp_overlap 249079 249083 249096, overlap 249083 249096 TATTTTTTAATTTAC TAATTAAATAAAAAAACACTTGTTGTA TAT TA-AACAAGTGTTTTTGT-TTTAATTA ATTAATAAACTCATG TERM 248 249096 - 249119 + T 95 -6.2 -5.54338 | gap 1, opp_overlap 249096 249083 249079, overlap 249083 249080 AATTAAATAAAAAAA CACTTGTTGTA TAT TA-AACAAGTG TTTTTGTTTTAATTA TERM 249 249119 - 249096 - T 100 -6.2 -6.01187 | gap 1, opp_overlap 249083 249080 249096, overlap 249083 249079 AATTAAATAAAAAAA CACTTGTTGTA TAT TA-AACAAGTG TTTTTGTTTTAATTA TERM 250 249394 - 249369 - T 100 -7.8 -5.68023 | opp_overlap 249369 CTATAATTAAAAAAA CATTAGTTAA TTAAAT TTAACTAATG TTTTTTTATCCTCTT TERM 251 249369 - 249394 + T 100 -7.8 -5.70829 | opp_overlap 249369 CTATAATTAAAAAAA CATTAGTTAA TTAAAT TTAACTAATG TTTTTTTATCCTCTT rpsO 249669 - 249400 - | ribosomal protein S15 rnc 250490 - 249780 - | ribonuclease III plsX 251475 - 250480 - | fatty acid/phospholipid synthesis protein PlsX TERM 252 250703 - 250719 + g 70 -2.3 -5.50925 | opp_overlap 250703, overlap 250704 TTTGACAATAAAGCA GCAAAAA GAT TTTTTGG TTTTTTATATTCATT TERM 253 251177 - 251160 - G 72 -3.3 -5.40464 | CATTATAAACAAAAA CAGCAGA ATTT CCAGCTG TTAACATTCCATCAG UPA3_0213 253174 - 251480 - | DAK2 domain-containing protein TERM 254 252806 - 252817 + g 80 -4.4 -5.45802 | overlap 252796 AATAGGTGTAGAGAC GCTT GCAT AAGC TTTTTCTTTTGCACC TERM 255 252944 - 252925 - G 91 -10 -4.21812 | opp_overlap 252925 TTTGACTTAAAATAA CACCAGAG TTAC CTCTGGCG TTCATTAATAGACCA TERM 256 252925 - 252944 + g 72 -7.8 -3.39895 | opp_overlap 252925 TTTGACTTAAAATAA CACCAGAG TTAC CTCTGGCG TTCATTAATAGACCA UPA3_0214 253455 - 253189 - | hypothetical protein UPA3_0215 254177 - 253560 - | hypothetical protein rpmB 254296 - 254490 + | ribosomal protein L28 TERM 257 254500 - 254558 + T 76 -6.5 -4.54026 | gap 1, opp_overlap 254501 254502 254518, overlap 254500 254502 254518 GCCTAGTGAACGAAA AT-GTTAAAAATAAAAAAATGTACAAAC CATT GCTTGTACATTTTTTTATTATTAACTGG TTATTTTATTTAAAG TERM 258 254500 - 254557 + T 81 -10.3 -3.31331 | opp_overlap 254501 254502 254518, overlap 254500 254502 254518 GCCTAGTGAACGAAA ATGTTAAAAATAAAAAAATGTACAAAC CATT GCTTGTACATTTTTTTATTATTAACTG GTTATTTTATTTAAA TERM 259 254556 - 254501 - T 100 -16 -4.43477 | opp_overlap 254500 254500 254502 254518, overlap 254502 254518 CCTAGTGAACGAAAA TGTTAAAAATAAAAAAATGTACAAAC CATT GCTTGTACATTTTTTTATTATTAACT GGTTATTTTATTTAA TERM 260 254555 - 254502 - T 100 -19.5 -3.25604 | opp_overlap 254500 254500 254502 254518, overlap 254501 254518 CTAGTGAACGAAAAT GTTAAAAATAAAAAAATGTACAAAC CATT GCTTGTACATTTTTTTATTATTAAC TGGTTATTTTATTTA TERM 261 254502 - 254555 + T 100 -17.3 -3.20316 | opp_overlap 254502 254501 254518, overlap 254500 254500 254518 CTAGTGAACGAAAAT GTTAAAAATAAAAAAATGTACAAAC CATT GCTTGTACATTTTTTTATTATTAAC TGGTTATTTTATTTA TERM 262 254539 - 254518 - T 100 -8.1 -6.20267 | opp_overlap 254502 254500 254500 254518, overlap 254502 254501 TTAAAAATAAAAAAA TGTACAAAC CATT GCTTGTACA TTTTTTTATTATTAA TERM 263 254518 - 254539 + T 100 -5.9 -5.95946 | opp_overlap 254518 254502 254501, overlap 254502 254500 254500 TTAAAAATAAAAAAA TGTACAAAC CATT GCTTGTACA TTTTTTTATTATTAA TERM 264 254897 - 254911 + T 80 -8.6 -4.14175 | opp_overlap 254897, overlap 254884 TTTAAAATAAAAAAA GAGGAA TAA TTCCTC TTTAATTATTATCTT TERM 265 254911 - 254897 - T 100 -8.6 -6.09196 | opp_overlap 254897 254884 TTTAAAATAAAAAAA GAGGAA TAA TTCCTC TTTAATTATTATCTT rpmA 255215 - 254913 - | ribosomal protein L27 UPA3_0218 255529 - 255221 - | hypothetical protein rplU 255837 - 255535 - | ribosomal protein L21 gmk 256155 - 256730 + | guanylate kinase UPA3_0221 256711 - 257721 + | hypothetical protein UPA3_0222 257725 - 258468 + | protein phosphatase TERM 266 258872 - 258883 + G 75 -3 -5.58074 | TATTCGTCAGGTTGC CTTA GGTG TAAG TTTTTTTCATAGTTG TERM 267 259323 - 259306 - g 93 -8.5 -4.78572 | opp_overlap 259305 259309 259319, overlap 259319 CGTTAATTAATAAAA CAATACC AAAA GGTATTG ATAATATTTTAATGC UPA3_0223 258474 - 259634 + | serine/threonine kinase TERM 268 259717 - 259727 + G 78 -6.8 -4.59773 | opp_overlap 259716 259717 TCAGATAAAAGCAAT TCCC AAA GGGA TTTTTAAACATAACA rsgA 259637 - 260548 + | ribosome small subunit-dependent GTPase A TERM 269 261687 - 261652 - g 75 -9.1 -3.14132 | opp_overlap 261684 GTGTTGGTTTAGTAA CAGGTGCAATTGCTG GATTAG CAACAATTACTCCTG CAGCAGGTTATGTTC UPA3_0225 260694 - 262217 + | ammonium transporter TERM 270 262252 - 262230 - f 73 -4.2 -5.43866 | opp_overlap 262232, overlap 262232 TAATTTTTAAAAAAA GACTAAAGCA AAA TACTTTAGTT TTTTTAATTAATAAA TERM 271 262250 - 262232 - f 76 -6.8 -4.35085 | opp_overlap 262232, overlap 262230 ATTTTTAAAAAAAGA CTAAAGCA AAA TACTTTAG TTTTTTTAATTAATA TERM 272 262232 - 262250 + F 79 -4.6 -5.65513 | opp_overlap 262232 262230 ATTTTTAAAAAAAGA CTAAAGCA AAA TACTTTAG TTTTTTTAATTAATA TERM 273 262289 - 262279 - f 75 -2.6 -6.01369 | opp_overlap 262279 TAAATAATAAAAAAA TAAA GAA TTTA TTAATTAACGTAATA TERM 274 263327 - 263343 + G 70 -8.7 -2.52543 | opp_overlap 263303 263302 ACAACAGTAGGTTTA GTGACTG GTG CAGTCGC TGGATTAGCAACAAT TERM 275 263871 - 263859 - g 85 -5.5 -5.40072 | overlap 263863 GTGGTTGTAAAAAAA GCAAC TTA GCTGC CAAGAAAAACCCTGT UPA3_0226 262391 - 263947 + | ammonium transporter TERM 276 263972 - 263993 + F 82 -4.5 -5.73978 | opp_overlap 263972 263975 GTATTTCATAATTAA GAAGTTAAT TAAA ACTAACTTC TTTTTTATTTATAAT UPA3_0227 264057 - 265343 + | hypothetical protein fhs 265358 - 266923 + | formate--tetrahydrofolate ligase TERM 277 267642 - 267654 + G 86 -7.7 -4.73864 | CCCATTCATTACGTC GTAGC TTT GCTAC TTTTATGTTAATTAA UPA3_0229 267053 - 267805 + | tyrosine recombinase XerC TERM 278 267852 - 267826 - f 85 -4.6 -5.93252 | TGTAAAAATAAAAAA TAAAAATGTTAA AAA TCGACATTTTTA TGCTAAAAAGCATAG TERM 279 268113 - 268123 + G 77 -5.4 -4.91712 | TTACTAACAGCTTCA GCAA TTA TTGC TTTTTATACATTCCC UPA3_0230 267924 - 270365 + | amino acid antiporter TERM 280 270376 - 270412 + F 86 -5.3 -6.09196 | opp_overlap 270379 270388 ATTAAAAAACAAAAA TGAGTCTTAATACTTTT TTA AAAAGTGTTTTGACTTA TTTTTTTATTTTACA TERM 281 270600 - 270580 - g 82 -9.8 -3.54743 | opp_overlap 270579 270578, overlap 270574 GATTATTAATGACAA CGCCAATT TTATT AATTGGCG GATTATCAACATTGG TERM 282 270873 - 270858 - g 77 -4.8 -5.10154 | overlap 270871 ATTGAAAATCAAAAA TTAGTT TTAA AACTAA ATAATTTACAAGACG UPA3_0231 270543 - 271691 + | putative lipoprotein UPA3_0232 271748 - 272065 + | putative lipoprotein UPA3_0233 272200 - 272517 + | hypothetical protein TERM 283 272546 - 272528 - f 89 -4.6 -6.14618 | opp_overlap 272528 TATAAAAGAAAAAAA TGACTTTA TAT TGAAGTCA TTTTTTATTACCTTT TERM 284 272528 - 272546 + F 100 -6.8 -5.52096 | opp_overlap 272528 TATAAAAGAAAAAAA TGACTTTA TAT TGAAGTCA TTTTTTATTACCTTT TERM 285 274017 - 274032 + G 71 -4.8 -4.86731 | TGAACTATATCCATA TGAATT ATCT AATTCA TTTTATTTAGAAAAA UPA3_0234 272692 - 274245 + | hypothetical protein TERM 286 274654 - 274644 - g 77 -5.4 -5.03314 | GTTATTGCTAAAAAA GGAA ATA TTCC TGTAACAAAAATTTT infC 274443 - 275006 + | translation initiation factor IF-3 rpmI 275021 - 275215 + | ribosomal protein L35 rplT 275270 - 275632 + | ribosomal protein L20 rpsJ 275851 - 276156 + | ribosomal protein S10 rplC 276181 - 276882 + | ribosomal protein L3 rplD 276893 - 277528 + | ribosomal protein L4/L1 family protein rplW 277531 - 277848 + | ribosomal protein L23 rplB 277902 - 278741 + | ribosomal protein L2 rpsS 278762 - 279028 + | ribosomal protein S19 TERM 287 279542 - 279572 + G 77 -8.5 -3.61715 | opp_overlap 279542 AACGTTGATCCAGAA CTTTTAAAACGTG AACAA CAAGTTTTAAAAG TTGTTGAAAAAACTG TERM 288 279572 - 279542 - g 75 -8.5 -3.36175 | opp_overlap 279542 AACGTTGATCCAGAA CTTTTAAAACGTG AACAA CAAGTTTTAAAAG TTGTTGAAAAAACTG TERM 289 279784 - 279802 + G 72 -9 -2.64155 | opp_overlap 279782 279789, overlap 279781 TGATTTAGAATCAGT TGAAATTG GTG CAATTTCA TCAATTTGAAGAAAA UPA3_0244 279050 - 279985 + | ribosomal protein L22 rpsC 280005 - 280778 + | ribosomal protein S3 rplP 280793 - 281209 + | ribosomal protein L16 rpmC 281209 - 281436 + | ribosomal protein L29 rpsQ 281436 - 281690 + | ribosomal protein S17 rplN 281710 - 282078 + | ribosomal protein L14 rplX 282093 - 282425 + | ribosomal protein L24 UPA3_0251 282442 - 282996 + | 50S ribosomal protein L5 rpsN 283000 - 283185 + | ribosomal protein S14p/S29e rpsH 283196 - 283594 + | ribosomal protein S8 UPA3_0254 283603 - 284151 + | 50S ribosomal protein L6 TERM 290 284303 - 284288 - g 82 -6.2 -4.9218 | overlap 284268 284267 284292 TAGTTATTACAAAAA CAAATG CACA CATTTG AGCACAATTAATTTG rplR 284170 - 284535 + | ribosomal protein L18 rpsE 284553 - 285164 + | ribosomal protein S5 TERM 291 285223 - 285211 - g 80 -4.1 -5.5208 | TTAGAATATAAAAAA GGTTC AAG AAACC ACAAAGAAAAACGTG rplO 285181 - 285627 + | ribosomal protein L15 TERM 292 286168 - 286178 + G 76 -4 -5.58074 | overlap 286166 TTCACCATTATTTTA TGTA ACA TACA TTTTTTTAATGGTTG TERM 293 286821 - 286838 + G 79 -8.5 -3.75517 | opp_overlap 286824, overlap 286824 TTTATCGCGTGAATT GAATTGG TGCA CCAATTC TTGCTTTTCTAGCAT UPA3_0258 285680 - 287095 + | preprotein translocase, SecY subunit adk 287104 - 287745 + | adenylate kinase map 287770 - 288519 + | methionine aminopeptidase, type I TERM 294 288669 - 288685 + G 73 -6.7 -4.10161 | overlap 288649 ATCAGGTAAAATGCG TGTTAAT AAA ATTAACA TTTTACCAGGTGATA infA 288547 - 288771 + | translation initiation factor IF-1 rpmJ 288795 - 288908 + | ribosomal protein L36 rpsM 288933 - 289331 + | ribosomal protein S13p/S18e TERM 295 289542 - 289507 - g 93 -4.7 -6.08342 | opp_overlap 289515 289519 GAACAAAGAAAAAAA CTCCATATTCAGCAG GTATTG CTGCTGAAGCTGCAG CAAAAGCTGTGATTG TERM 296 289519 - 289551 + G 73 -9.1 -2.81725 | opp_overlap 289507, overlap 289515 AAACTCCATATTCAG CAGGTATTGCTGCTG AAG CTGCAGCAAAAGCTG TGATTGATATGGGAT rpsK 289353 - 289718 + | ribosomal protein S11 rpoA 289755 - 290738 + | DNA-directed RNA polymerase, alpha subunit TERM 297 290960 - 290930 - g 74 -4.6 -5.06414 | opp_overlap 290948 290949 TCTTGCTAAGAAAAA CACACTTGCTTCAC GTC GTGCAGCAGCTGCG ATTTTATTAGGAACA rplQ 290766 - 291125 + | ribosomal protein L17 TERM 298 291506 - 291490 - g 70 -2.3 -5.5112 | GGGATTAATAAAAAA TAATGAA AAT TCCATCA CTTCTAAAGTTCAAA TERM 299 292050 - 292064 + G 71 -5 -4.75174 | ATCATTTTGATGTTC GATTTG ATA CAGATC TTTTTCAATTCAATA TERM 300 293073 - 293088 + G 83 -4.8 -5.52384 | AAAACAGATTAAGTT TAAATC CTTT GATTTA TTTTTTTCCTAAAAC UPA3_0267 291392 - 293257 + | hypothetical protein UPA3_0268 293264 - 294559 + | putative lipoprotein UPA3_0269 294626 - 295033 + | hypothetical protein TERM 301 295473 - 295461 - g 70 -6.3 -4.18668 | opp_overlap 295461, overlap 295456 295454 CTAAAAAATACTAAA TTTGC AAA GCAAA TTTTAACATCAATTA TERM 302 295461 - 295473 + G 70 -6.3 -4.15453 | opp_overlap 295461 295456 295454 CTAAAAAATACTAAA TTTGC AAA GCAAA TTTTAACATCAATTA UPA3_0270 295023 - 295610 + | hypothetical protein UPA3_0271 297402 - 295618 - | putative lipoprotein TERM 303 296129 - 296139 + g 72 -3.2 -5.33866 | GAAAGTTTTTGATTA GCAT TAC GTGC TTTTTTCTCAATTTC TERM 304 296160 - 296172 + g 70 -3.5 -5.26875 | opp_overlap 296166, overlap 296165 TCTCAATTTCGTTTG TTAAA TCT TTTAA TTTTTTAATTAAGAG TERM 305 296187 - 296199 + g 78 -4.1 -5.40072 | opp_overlap 296187, overlap 296165 ATTTTTTAATTAAGA GGTAG TAT TTACC TTTTTTTGAAAGAGA TERM 306 296649 - 296676 + g 82 -10.8 -2.7795 | opp_overlap 296648 296646 296642 296649, overlap 296646 296673 GTACTGAAGAAATAT TTTCATGAAGTT GATT AGCTTCATGAAA TAATTCCATAATTTC TERM 307 296676 - 296649 - G 71 -8.6 -2.81702 | opp_overlap 296649 296646 296673, overlap 296648 296646 296642 GTACTGAAGAAATAT TTTCATGAAGTT GATT AGCTTCATGAAA TAATTCCATAATTTC TERM 308 296830 - 296840 + g 79 -4 -5.80248 | ATAAAGACCATCGTA TGAT TCA ATCA TTTTTTTATATCTTA TERM 309 296916 - 296956 + g 83 -5 -5.61881 | TAGTTAAAATTTCTT CAATATTATTTTTGATAT GATCG ATATCATGAATAATTTTG TTTTTATTTTTAAAA TERM 310 297600 - 297579 - R 93 -8.9 -5.0133 | opp_overlap 297575 297579 TACCTTTTTAAAAAA CTAACTTTA TTAT TAAAGTTAG TTAGGTTTATTTTTA TERM 311 297579 - 297600 + r 78 -8.9 -3.47498 | opp_overlap 297579, overlap 297575 TACCTTTTTAAAAAA CTAACTTTA TTAT TAAAGTTAG TTAGGTTTATTTTTA UPA3_0272 300597 - 297613 - | cation-transporting P-type ATPase TERM 312 298092 - 298106 + g 72 -4.2 -4.98255 | opp_overlap 298092 ATGTTAAAGACGAAC CAGCCA TAA TCGCTG TTTTTATGGTTAAAA TERM 313 299669 - 299655 - G 81 -7.2 -4.55491 | TACCGAATGATAAAA CAATTG TTA CAATTG CCACAATTCCTTCAG TERM 314 300161 - 300179 + g 75 -7.6 -4.08689 | overlap 300177 CCCATTACAACTTGG TTAGAATT AAT AATTCTAA TTTGATTATTACGTA UPA3_0273 300748 - 301077 + | hypothetical protein UPA3_0274 301082 - 301708 + | ATP/GTP-binding protein TERM 315 303316 - 303332 + G 70 -3.7 -5.11613 | TTGATAAATATGGAT TAGATGC TAT GCGTTTA TTTTTTGCATCATGT TERM 316 304253 - 304238 - g 86 -3.4 -6.01187 | AATTAAAGAAAAAAA TAAATT AATT AATTTA AAAAAAGAACACGCA valS 301689 - 304313 + | valyl-tRNA synthetase UPA3_0276 304318 - 304836 + | rRNA methylase trmB 304842 - 305516 + | tRNA (guanine-N(7)-)-methyltransferase TERM 317 305648 - 305672 + F 100 -7.3 -5.76237 | opp_overlap 305648 TTAAAATTAAAAAAA CTTAATGTTAT AAA AAAACATTAAG TTTTTTCTTTGTATA TERM 318 305672 - 305648 - f 100 -7.3 -5.79588 | opp_overlap 305648 TTAAAATTAAAAAAA CTTAATGTTAT AAA AAAACATTAAG TTTTTTCTTTGTATA UPA3_0279 305764 - 306435 + | hypothetical protein TERM 319 307694 - 307684 - g 81 -2.6 -6.02546 | CTAAATTAAAAAAAA TATA TCT TATA AGCACTTTATTATTA UPA3_0280 306489 - 307856 + | hypothetical protein TERM 320 307835 - 307846 + G 78 -4.4 -5.28826 | AGTGGAGGATAGTGA TGCA AGAT TGCA TTTTTTGTAAAATTT TERM 321 308062 - 308075 + G 70 -5.3 -4.63107 | TTAGAAGAAGTTTTT CCTAA TGTT TTAGG TTTTAATTATTTAAT UPA3_0281 307834 - 308292 + | histidine triad protein HIT TERM 322 308846 - 308866 + G 76 -7.1 -4.43213 | opp_overlap 308827 308851, overlap 308851 AACACAATCGTTTTG TAAAATTAT TTA ATAATTTTA TTTTAGTGTATTGAA UPA3_0283 308302 - 309057 + | hypothetical protein UPA3_0282 310118 - 309054 - | coproporphyrinogen III oxidase UPA3_0284 310345 - 310133 - | hypothetical protein TERM 323 310563 - 310549 - g 93 -2.8 -6.47325 | opp_overlap 310551, overlap 310551 AAAAAAGAAAAAAAA GATCGT TCA ACGATT CAATTATTATTTGGA TERM 324 310561 - 310551 - g 74 -5.4 -4.77908 | opp_overlap 310551, overlap 310549 AAAAGAAAAAAAAGA TCGT TCA ACGA TTCAATTATTATTTG TERM 325 310602 - 310591 - g 88 -5.8 -5.37865 | GGAACAATTAAAAAA CGCA AAAT TGCG AACTATTTAATTATT UPA3_0285 310525 - 311070 + | hypothetical protein UPA3_0286 311073 - 312164 + | nicotinate phosphoribosyltransferase rpsU 312240 - 312407 + | ribosomal protein S21 TERM 326 312427 - 312454 + F 75 -4.1 -5.69793 | opp_overlap 312427 GAAACGCACATGAAT CCAACCATTAC TTGAAT GTTTTGGTTGG TTTTTTCTTTAATAT argS 312531 - 314183 + | arginyl-tRNA synthetase pgk 314186 - 315454 + | phosphoglycerate kinase UPA3_0290 315458 - 316549 + | endo-1,4-beta-glucanase deoD 316623 - 317342 + | purine nucleoside phosphorylase UPA3_0292 317438 - 317830 + | DNA-binding protein HU TERM 327 317881 - 317831 - f 85 -10.1 -3.72078 | opp_overlap 317835 317841 317846, overlap 317835 317846 TCAGAAAATAATTAA TTAATAATATGAAAACACGAGTT TTAAT AACTCGTGTTTTGTTATTATTTA AATAAGTATAATAAA TERM 328 317835 - 317877 + F 90 -10.9 -3.67792 | opp_overlap 317831 317835 317846, overlap 317841 317846 AAAATAATTAATTAA TAATATGAAAACACGAGTT TTAAT AACTCGTGTTTTGTTATTA TTTAAATAAGTATAA TERM 329 317877 - 317835 - f 87 -10.9 -3.52762 | opp_overlap 317835 317841 317846, overlap 317831 317846 AAAATAATTAATTAA TAATATGAAAACACGAGTT TTAAT AACTCGTGTTTTGTTATTA TTTAAATAAGTATAA TERM 330 317841 - 317871 + F 88 -9.9 -4.10744 | opp_overlap 317835 317831 317846, overlap 317835 317846 ATTAATTAATAATAT GAAAACACGAGTT TTAAT AACTCGTGTTTTG TTATTATTTAAATAA TERM 331 317846 - 317866 + F 95 -9.8 -5.04082 | opp_overlap 317835 317831 317846, overlap 317841 317835 TTAATAATATGAAAA CACGAGTT TTAAT AACTCGTG TTTTGTTATTATTTA TERM 332 317866 - 317846 - f 87 -9.8 -4.49937 | opp_overlap 317846 317841 317835, overlap 317835 317831 TTAATAATATGAAAA CACGAGTT TTAAT AACTCGTG TTTTGTTATTATTTA TERM 333 319411 - 319426 + G 79 -4 -5.75342 | TACAAAAGAACAATT TTTAGC TAAT GCTGAA TTTTTTTTAGAAGGC UPA3_0293 317930 - 320086 + | ppGpp 3'-pyrophosphohydrolase TERM 334 320119 - 320105 - g 71 -2.9 -5.46276 | AACATATACAAAAAA CAAAA TTTAT TTTTG TAACTGGTGGTGTTT pyrG 320086 - 321699 + | CTP synthase hisS 321703 - 322965 + | histidyl-tRNA synthetase TERM 335 324657 - 324637 - g 72 -9.1 -2.62263 | ACGGCGTTGATATGA TGTTAGACG CAC CATCTAACA TGAATGATGAAGATT aspS 322971 - 324707 + | aspartyl-tRNA synthetase UPA3_0297 324700 - 325536 + | hypothetical protein TERM 336 325536 - 325517 - f 79 -4.4 -5.66868 | opp_overlap 325517 AATGAATTAAAAAAA TTATTCCT TTTG AAGAATAA TTATAGTAAAATAAG TERM 337 325750 - 325764 + G 71 -5 -4.85545 | opp_overlap 325750, overlap 325745 AGAAACTGTTCAAAT CGATTA TGA TGATCG TTTTGTTAGTTTAAT msrA 325577 - 326074 + | methionine-S-sulfoxide reductase TERM 338 326070 - 326105 + T 100 -10.6 -5.2189 | opp_overlap 326070 326078, overlap 326078 CTAAAAAAGAATTCA GATAAAAACCAGGCGT TTTT GCGTCTGGTTTTTATA TTTTTTAATCATTAA TERM 339 326097 - 326078 - T 73 -4.9 -5.00642 | opp_overlap 326070 326078, overlap 326070 GAATTCAGATAAAAA CCAGGCG TTTTTG CGTCTGG TTTTTATATTTTTTA TERM 340 326078 - 326097 + T 95 -7.8 -5.41787 | opp_overlap 326078 326070, overlap 326070 GAATTCAGATAAAAA CCAGGCGT TTTT GCGTCTGG TTTTTATATTTTTTA UPA3_0299 326700 - 326110 - | hypothetical protein TERM 341 326336 - 326324 - G 90 -7.7 -4.95155 | opp_overlap 326324, overlap 326328 CCTATAGCATAAAAA CCACT TTC AGTGG TTAAATCAACAATTA UPA3_0300 327195 - 326707 - | glutathione peroxidase TERM 342 329134 - 329149 + G 70 -6.2 -4.08948 | opp_overlap 329132 329134 GCTTTAGCATCAACA CCATAT ATTG ATATGG TTATTTCTGGAATTC TERM 343 329772 - 329762 - g 74 -2.6 -5.71638 | overlap 329754 TAATAATTAAAAAAA TTTT ATC AAAA GGTACAAATTTAAAA TERM 344 330178 - 330163 - g 75 -3.4 -5.47846 | AACCAAAAAACAAAA TTAAAA AGCC TTTTAA GAATGAGTGTTGATG TERM 345 330648 - 330616 - g 74 -5.1 -4.83269 | ACAGTAGATCAAAAA CAAAAGATTAATAAT TTT ATCACTAATATTTTG CCAACAATACCTAAT TERM 346 331891 - 331880 - g 78 -3 -5.66684 | opp_overlap 331880 CAATTGATAAAAAAA CAAA TGAT TTTG CTTTTCAAATTTTGA TERM 347 334538 - 334528 - g 70 -4 -5.1675 | CTACTTATTAAAAAA GTTT TAC AAAC ACAAACCTTAAATAA TERM 348 334588 - 334613 + G 74 -6.3 -4.51743 | opp_overlap 334583 334588 334592 334611 GTTGTAAAAATTAAC GAAACAATTAA AACA TTAATTGATTC TTTATTTGCTAATCA TERM 349 334737 - 334722 - g 74 -2.6 -5.63374 | overlap 334724 CGAAGATCAAAAAAA TAGTTT AATT AAACCA GTAGTTGAATTTATT UPA3_0301 327517 - 337683 + | hypothetical protein TERM 350 337693 - 337720 + F 91 -5.1 -6.14618 | opp_overlap 337693 AAATAATTATAAAAA TATTAGAGATT TTAAAC AATCTTTAATA TTTTTTTATTTTATA TERM 351 337893 - 337907 + G 75 -7.2 -4.12599 | GCACTTTTTTAGGGT TAGGAA TAA TTCCTA TTTTAGCAAGTTCTT TERM 352 338638 - 338652 + G 88 -5.8 -5.4505 | opp_overlap 338637 338651 TATAAAAAACGATAT TGATTT TTT AAATCA TTTTTTATTAAAAGA UPA3_0302 337841 - 338680 + | putative lipoprotein TERM 353 338820 - 338846 + G 79 -10.2 -2.8154 | opp_overlap 338819, overlap 338819 ACCCAGAGGCAAATT CGCGTTTAAAAG TTG CTATTGAACGCG CTTTAAATAATAATT UPA3_0303 338690 - 339400 + | hypothetical protein UPA3_0305 339400 - 340107 + | hypothetical protein UPA3_0304 340616 - 340104 - | recombination protein U TERM 354 340828 - 340816 - g 70 -6.3 -4.03413 | overlap 340824 ACTTTTTTATATAAA GGTAA TAT TTACC AAGTAATAGAAAATT efp 340759 - 341325 + | translation elongation factor P UPA3_0307 341328 - 341630 + | hypothetical protein nusB 341633 - 342016 + | transcription antitermination factor NusB UPA3_0309 342022 - 342726 + | hypothetical protein UPA3_0311 342753 - 343700 + | hypothetical protein UPA3_0310 343864 - 343697 - | hypothetical protein TERM 355 343730 - 343743 + g 100 -6.7 -5.95449 | opp_overlap 343722 343730 343740 AATAAAATCTCAAAA GTGGT CTAA ACCAC TTTTTTGTTTTATTT TERM 356 343743 - 343730 - G 74 -6.7 -4.30559 | opp_overlap 343730, overlap 343722 343740 AATAAAATCTCAAAA GTGGT CTAA ACCAC TTTTTTGTTTTATTT TERM 357 346062 - 346047 - H 72 -7.6 -3.62096 | opp_overlap 346046 GGGGAGCAGGCCAAA CCGAAT TTCG ATTCGG GGTTGTAGGACTACA TERM 358 348857 - 348881 + H 79 -3.6 -6.08342 | opp_overlap 348857 ATCGCTACGCTAGAA CCAACCTT GAAATTTAA GAGGTTGG TTTTTTTATTTATTA greA 348963 - 349433 + | transcription elongation factor GreA TERM 359 350061 - 350079 + F 89 -6 -5.38326 | opp_overlap 350061 TAATATTTAACTAAA CTCCAC CCTATTA GTGGAG TTTTTCTTTAATTAA UPA3_0320 350104 - 350871 + | DNA methylase UPA3_0321 350915 - 351835 + | apurinic endonuclease (APN1) TERM 360 351884 - 351896 + T 95 -7.7 -5.47218 | opp_overlap 351884 AAAAAAAAAAAAAAA GGAGA AGT TCTCC TTTTTTTCGATCACA TERM 361 351896 - 351884 - T 100 -7.7 -7.14698 | opp_overlap 351884 AAAAAAAAAAAAAAA GGAGA AGT TCTCC TTTTTTTCGATCACA UPA3_0322 353019 - 352069 - | hypothetical protein UPA3_0323 354167 - 353022 - | hypothetical protein TERM 362 353435 - 353456 + g 72 -3.1 -5.43329 | opp_overlap 353435, overlap 353436 AAATATTAAAATCAC GTTCAATAT TGTA ATATTGAAA TTTTGTTTTATTTTT TERM 363 353805 - 353817 + g 80 -4.9 -5.37865 | opp_overlap 353786 353803 AACATTATAATGATT TAATG AAA CATTA TTTTTTAATTCTTCA TERM 364 354378 - 354359 - H 71 -2.2 -5.76949 | opp_overlap 354371, overlap 354368 354371 TATGTTTAAAAAAAA TATACACA ATGA TGTTTATA AATTATAAACATTAA UPA3_0324 354504 - 355064 + | hypothetical protein rpsT 355386 - 355132 - | ribosomal protein S20 TERM 365 355492 - 355482 - R 87 -2.6 -6.5058 | opp_overlap 355489 ATAAATAAAAAAAAA TAAA TGT TTTA ACAGATTAAATTTAT TERM 366 355931 - 355977 + r 100 -14.2 -3.63608 | gap 1, opp_overlap 355943, overlap 355943 AACACGGCTTATTTT TACATGCAAAAACCCACTCTT ATAAAA AAGAGTGGGTTTTTGTAT-TA TGTTTGATTATATTT TERM 367 355966 - 355943 - R 100 -11.1 -4.70659 | opp_overlap 355943 355931 TTTTACATGCAAAAA CCCACTCTT ATAAAA AAGAGTGGG TTTTTGTATTATGTT TERM 368 355943 - 355966 + r 100 -11.1 -5.18995 | opp_overlap 355943, overlap 355931 TTTTACATGCAAAAA CCCACTCTT ATAAAA AAGAGTGGG TTTTTGTATTATGTT UPA3_0326 356415 - 355975 - | N-acetyltransferase complex, ribosomal protein-alanine-acetyltransferase subunit UPA3_0327 356968 - 356393 - | glycoprotease family protein TERM 369 356444 - 356471 + g 79 -10.2 -2.90212 | opp_overlap 356447, overlap 356447 ATCTAAGATATTAGT TAACTTAAAATT ATCA AATTTTAAGTTA TATATGAGATCATGA TERM 370 356447 - 356468 + g 70 -7.5 -3.59698 | opp_overlap 356447, overlap 356444 TAAGATATTAGTTAA CTTAAAATT ATCA AATTTTAAG TTATATATGAGATCA UPA3_0328 357839 - 356961 - | pseudouridylate synthase, 23S RNA-specific UPA3_0329 358654 - 357863 - | hypothetical protein ppa 359199 - 358654 - | inorganic diphosphatase UPA3_0331 359365 - 359745 + | hypothetical protein TERM 371 359994 - 360031 + F 73 -6.5 -4.15698 | gap 1, opp_overlap 360000 TCTATCGTTATTTGC TAAAAAGCAAAG-CCTCT TTT ATAGGTCTTTGCCTTTTA TTGTTTGTGTCAATC TERM 372 360025 - 360000 - f 71 -5.5 -4.58395 | gap 1, opp_overlap 359994 GTTATTTGCTAAAAA GCAAAG-CCTCT TTT ATAGGTCTTTGC CTTTTATTGTTTGTG UPA3_0332 360032 - 364681 + | efflux ABC transporter, permease protein TERM 373 364741 - 364768 + F 100 -13.6 -4.14627 | opp_overlap 364745, overlap 364745 AAGTAAAATGTGAAT GAAATGACGACC TTAG GGTTGTCATTTC TTATTTATATGAAAG TERM 374 364745 - 364764 + F 86 -8.6 -4.65458 | opp_overlap 364745, overlap 364741 AAAATGTGAATGAAA TGACGACC TTAG GGTTGTCA TTTCTTATTTATATG TERM 375 366053 - 366037 - g 73 -5.9 -4.56629 | opp_overlap 366037, overlap 366027 TAGAAGATGATAAAA TTGAACA AGA TGTCCAA TTAAATCACCCATTA nusA 364794 - 366170 + | transcription termination factor NusA TERM 376 366382 - 366364 - g 72 -3.2 -5.43866 | CAATTTCTAAAAAAA CGTTTT ATGATTA AAAACG AAGAACAAGTTTATC UPA3_0334 366181 - 366432 + | hypothetical protein infB 366467 - 368311 + | translation initiation factor IF-2 rbfA 368319 - 368669 + | ribosome-binding factor A UPA3_0337 368677 - 369087 + | hypothetical protein TERM 377 369081 - 369123 + T 100 -9.7 -5.66338 | gap 2, opp_overlap 369081 369092, overlap 369081 TGCGACACACATATA TTA-TTAAAAAAGATAGG-GT CAT ACTCCTATCTTTTTTAATTAA TTTTTTATTGTATTT TERM 378 369081 - 369122 + T 93 -11.3 -3.96142 | gap 1, opp_overlap 369081 369092, overlap 369081 TGCGACACACATATA TTATTAAAAAAGATAGG-GT CAT ACTCCTATCTTTTTTAATTA ATTTTTTATTGTATT TERM 379 369122 - 369081 - T 84 -11.3 -3.08197 | gap 1, opp_overlap 369081 369081, overlap 369092 TGCGACACACATATA TTATTAAAAAAGATAGG-GT CAT ACTCCTATCTTTTTTAATTA ATTTTTTATTGTATT TERM 380 369111 - 369092 - T 81 -5.8 -5.20216 | gap 1, opp_overlap 369081 369081, overlap 369081 TATATTATTAAAAAA GATAGG-GT CAT ACTCCTATC TTTTTTAATTAATTT UPA3_0338 369862 - 369167 - | hypothetical protein TERM 381 369552 - 369569 + g 83 -3.5 -5.98675 | opp_overlap 369555 TTTTGAAAATTGAAT TGACAAT GAAA ATTGTTA TTTTTTATTTTTATA lepA 371674 - 369875 - | GTP-binding protein LepA TERM 382 371749 - 371768 + r 73 -6.5 -4.22283 | opp_overlap 371749, overlap 371744 AATAAAAATAAAAAA CAACTCT ATTTAA AGAGTTG TTTCATGTTTTTTTG TERM 383 371768 - 371749 - R 100 -6.5 -6.01725 | opp_overlap 371744 371749 AATAAAAATAAAAAA CAACTCT ATTTAA AGAGTTG TTTCATGTTTTTTTG UPA3_0340 372451 - 371792 - | LemA family protein TERM 384 372153 - 372169 + g 74 -6.7 -4.21744 | TCTAATACTTTTTCT TCATATT TGT AATATGA TTTAGTTTGTTCAAT UPA3_0341 372597 - 372956 + | hypothetical protein TERM 385 373523 - 373511 - g 70 -3.5 -5.14563 | opp_overlap 373499 373511 TTTTTTATTAAAAAA TAAAT TCT ATTTA ATTGCTACTATTTTA TERM 386 373615 - 373627 + G 79 -6.3 -4.73613 | GTAATGAAGGTCATG GTTTG GTA CAAAC TTTTATTGATCATGC UPA3_0342 372960 - 373733 + | rRNA methylase TERM 387 374484 - 374467 - g 83 -3.5 -5.90981 | TTACATGAAAAAAAA TATAACA AAAA CGTTATA TCTAGCTCTTTAAAT UPA3_0343 373717 - 374661 + | DNA polymerase III delta subunit superfamily protein TERM 388 376070 - 376059 - g 73 -2.2 -5.64873 | TTTAAGAACAAAAAA TCCC TTTA GAGA CTTGTTTGGTTTTTA UPA3_0344 374818 - 376086 + | hypothetical protein TERM 389 376249 - 376235 - g 75 -7.2 -4.14013 | opp_overlap 376233 376235 TAAAACTTTTTAAAA CGATTA ATT TAATCG TGGTTTTTGCTGTTT UPA3_0345 376087 - 377070 + | hypothetical protein UPA3_0346 377402 - 377524 + | hypothetical protein UPA3_0347 378101 - 377799 - | hypothetical protein udk 378753 - 378130 - | uridine kinase rpmF 378939 - 379112 + | ribosomal protein L32 UPA3_0350 379121 - 379378 + | hypothetical protein TERM 390 379379 - 379399 + F 100 -7.7 -6.32976 | opp_overlap 379382 ATTAAATTAAGTTAG TAACAACTT CAT GAGTTGTTA TTTTTTTATTTTTTT UPA3_0351 379497 - 381506 + | hypothetical protein UPA3_0352 381530 - 382837 + | hypothetical protein TERM 391 382862 - 382881 + F 100 -9.4 -5.27938 | opp_overlap 382862 AGGAAACACAAAAAA GGCTTTTA ATAA TAAAAGCC TTTTTATTTCAAAAT TERM 392 382881 - 382862 - f 100 -9.4 -5.5762 | opp_overlap 382862 AGGAAACACAAAAAA GGCTTTTA ATAA TAAAAGCC TTTTTATTTCAAAAT TERM 393 383492 - 383510 + G 74 -4.6 -4.94972 | AATTTTATTATTAGC TGTGTG AATAAAG CACACA TTTTTAATTCTAATG TERM 394 383667 - 383677 + G 79 -4 -5.63236 | opp_overlap 383667, overlap 383658 GTGGAATCGGTAAAT TAAC GAC GTTA TTTTTATTTTTGAAT UPA3_0353 382895 - 383704 + | methylenetetrahydrofolate dehydrogenase TERM 395 384135 - 384125 - g 71 -2.6 -5.58209 | TGAAATTGAAAAAAA TAAT CAA ATTA ATATATGTAACAGCC UPA3_0354 383781 - 385667 + | hypothetical protein dnaK 385843 - 387654 + | chaperone protein DnaK TERM 396 387662 - 387695 + F 93 -12 -3.56987 | opp_overlap 387659 387668, overlap 387665 387668 387690 AGAAATAATTAATTT TAATAACCAATGGT TTAAAT ACCATTGGTTATTG TTATATAATAATGTA TERM 397 387665 - 387692 + F 95 -11.5 -3.91332 | opp_overlap 387659 387668, overlap 387662 387668 387690 AATAATTAATTTTAA TAACCAATGGT TTAAAT ACCATTGGTTA TTGTTATATAATAAT TERM 398 387668 - 387689 + F 80 -8.8 -4.07466 | opp_overlap 387668 387659, overlap 387665 387662 AATTAATTTTAATAA CCAATGGT TTAAAT ACCATTGG TTATTGTTATATAAT TERM 399 387689 - 387668 - f 77 -8.8 -3.69338 | opp_overlap 387665 387662 387668, overlap 387659 AATTAATTTTAATAA CCAATGGT TTAAAT ACCATTGG TTATTGTTATATAAT UPA3_0356 387766 - 388872 + | hypothetical protein UPA3_0357 388909 - 389484 + | hypothetical protein cmk 389484 - 390158 + | cytidylate kinase UPA3_0359 390235 - 390522 + | hypothetical protein TERM 400 390509 - 390549 + F 71 -6.6 -4.02424 | gap 1, opp_overlap 390507 390505 390512 390515 390519 390523 390548, overlap 390507 390505 390513 390515 390519 390548 TTAATAAACTAGAGT TAAGTATTAACTAATTATT TTCA AATAATTAGTTAAT-CATA TTTATAATAATTAAT TERM 401 390546 - 390512 - f 71 -8.3 -3.18126 | gap 1, opp_overlap 390507 390505 390509 390513 390515 390519, overlap 390507 390505 390515 390519 390523 ATAAACTAGAGTTAA GTATTAACTAATTATT TTCA AATAATTAGTTAAT-C ATATTTATAATAATT TERM 402 390513 - 390547 + F 70 -6.9 -3.59935 | gap 1, opp_overlap 390507 390505 390512 390515 390519 390523, overlap 390507 390505 390509 390515 390519 TAAACTAGAGTTAAG T-ATTAACTAATTATT TTCA AATAATTAGTTAATCA TATTTATAATAATTA TERM 403 390544 - 390515 - f 84 -11.1 -2.77926 | opp_overlap 390507 390505 390513 390509 390515 390519, overlap 390507 390505 390512 390519 390523 AACTAGAGTTAAGTA TTAACTAATTATT TTCA AATAATTAGTTAA TCATATTTATAATAA TERM 404 390515 - 390544 + F 84 -11.1 -2.91255 | opp_overlap 390507 390505 390515 390512 390519 390523, overlap 390507 390505 390513 390509 390519 AACTAGAGTTAAGTA TTAACTAATTATT TTCA AATAATTAGTTAA TCATATTTATAATAA UPA3_0360 390574 - 391368 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase scpA 391509 - 392384 + | segregation and condensation protein A TERM 405 393150 - 393138 - g 71 -4.9 -4.75776 | AACTCAATCCAAAAA TAAAG ATG CTTTA TCAAAATTTGTTACA UPA3_0362 392377 - 393471 + | segregation and condensation protein B TERM 406 393719 - 393699 - g 86 -6.9 -5.0925 | CTTCAAAATTAAAAA TTCCTGG TTTTCGT CCAGGAA AAGTTCCGGTTGAAG tig 393566 - 394915 + | trigger factor TERM 407 395506 - 395493 - g 70 -3.9 -5.10064 | TTCAAGACATAAAAA TATCA ATTT TGATA ATATGCACGCTTTAA TERM 408 396895 - 396875 - g 70 -7.7 -3.54144 | opp_overlap 396878, overlap 396878 ATAAAAAAGAAGAGA CAACAATTC CAG GAATTGTTA ATGGAATGGCTTATA TERM 409 396892 - 396878 - g 74 -7.2 -3.83881 | opp_overlap 396878, overlap 396875 AAAAAGAAGAGACAA CAATTC CAG GAATTG TTAATGGAATGGCTT lon 395062 - 397437 + | ATP-dependent protease La TERM 410 397440 - 397482 + F 70 -7.5 -3.52539 | gap 1, opp_overlap 397442 397452, overlap 397442 397452 TGGAGAAAAATAAGA AAT-ATTAAAAAATAAACAC TGAA GTGTTTATTTTTTAATTATG TTATAATTAAAATTA TERM 411 397479 - 397442 - f 100 -11.7 -4.80417 | opp_overlap 397440 397442 397452, overlap 397452 GAGAAAAATAAGAAA TATTAAAAAATAAACAC TGAA GTGTTTATTTTTTAATT ATGTTATAATTAAAA TERM 412 397442 - 397480 + F 81 -10.1 -3.33214 | gap 1, opp_overlap 397442 397452, overlap 397440 397452 GAGAAAAATAAGAAA T-ATTAAAAAATAAACAC TGAA GTGTTTATTTTTTAATTA TGTTATAATTAAAAT TERM 413 397452 - 397469 + F 93 -7.1 -5.3671 | opp_overlap 397442 397452, overlap 397442 397440 AGAAATATTAAAAAA TAAACAC TGAA GTGTTTA TTTTTTAATTATGTT TERM 414 397469 - 397452 - f 93 -7.1 -5.34055 | opp_overlap 397452 397442 397440, overlap 397442 AGAAATATTAAAAAA TAAACAC TGAA GTGTTTA TTTTTTAATTATGTT UPA3_0365 397523 - 398869 + | RNA polymerase sigma factor UPA3_0366 398853 - 399518 + | hypothetical protein UPA3_0367 399499 - 400287 + | NIF3 family protein TERM 415 400321 - 400283 - T 100 -14.3 -3.0339 | opp_overlap 400283, overlap 400278 400274 400288 TAAAAATTAACTATA TTTAATTAAAAAAAGCC TTTAG GGCCTTTTTTAATTAAA TTTTTAAATCAAGAT TERM 416 400283 - 400321 + T 100 -12.8 -4.66163 | opp_overlap 400278 400274 400283 400288 TAAAAATTAACTATA TTTAATTAAAAAAAGCCT TTA GGGCCTTTTTTAATTAAA TTTTTAAATCAAGAT TERM 417 400316 - 400288 - T 77 -9.8 -3.16534 | opp_overlap 400283, overlap 400283 400278 400274 ATTAACTATATTTAA TTAAAAAAAGCC TTTAG GGCCTTTTTTAA TTAAATTTTTAAATC UPA3_0368 400646 - 400317 - | hypothetical protein TERM 418 400761 - 400779 + r 81 -7.6 -4.59293 | opp_overlap 400761 400760 TTTTTTATATAAAAT TTTAGAAA TTT TTTCTAAA TTTATTTAATATTTG UPA3_0369 401898 - 400873 - | hypothetical protein TERM 419 401047 - 401063 + g 70 -3.8 -5.17353 | ATCTTGTTTAATTAC TTTTTG TAATT CAAAAA TTTTTTCATCACTAT truB 402004 - 402687 + | tRNA pseudouridine synthase B UPA3_0371 402653 - 403504 + | riboflavin biosynthesis protein RibF-like protein UPA3_0372 403647 - 405314 + | putative lipoprotein TERM 420 406079 - 406098 + G 82 -9.4 -3.57263 | AAAATTATGCAACGC GATTTTGC TTTG GCAAAATC TTTAGGAATCAAAGT TERM 421 406164 - 406148 - g 77 -9.5 -3.05343 | opp_overlap 406149 406152 GTGACAGTTTTAACA GCAATTG TAA CAATTGC AACTGTTAATATTAC UPA3_0373 405329 - 406399 + | citrate-dependent iron transport, membrane-bound protein TERM 422 406550 - 406564 + G 74 -2.8 -5.73339 | CAGCTTGAGTTATTA GTATTG TTA CAATTC TTTTTTTATCGTTAT UPA3_0374 406405 - 407508 + | ferrichrome ABC transporter TERM 423 407521 - 407546 + F 100 -9.2 -7.14698 | TAAGCACAATCTTAG TAGTGAACAA GCCATA TTGTTCACTA TTTTTTTTTTTTTTT TERM 424 408911 - 408927 + G 71 -6.7 -3.90588 | opp_overlap 408910 408913 GTTGATAAAGTAATT TATTCAT ATA ATGAATA TTTAATTAAAGGATA UPA3_0375 407657 - 409291 + | putative ABC substrate-binding protein - iron TERM 425 410638 - 410654 + G 71 -6.7 -3.90588 | opp_overlap 410637 410640 GTTGATAAAGTAATT TATTCAT ATA ATGAATA TTTAATTAAAGGATA UPA3_0376 409384 - 411018 + | putative ABC substrate-binding protein - iron TERM 426 411135 - 411111 - f 81 -7.4 -4.66609 | GAGTTTATCTAAAAA TTTAATTCTT ACAAA AAGAATTAAA GTAGAATATATATTA TERM 427 411613 - 411628 + G 77 -4.8 -5.13722 | overlap 411621 GTTAGTTGTTGGTGA TGATTT ACTA AAATCA TTTTATTTTGATACA UPA3_0377 411176 - 411700 + | putative lipoprotein TERM 428 411702 - 411755 + T 100 -15.9 -3.93148 | opp_overlap 411713 411719, overlap 411705 411719 TCAAAATGCTTTAGT TTGTTAATAAATAAAAACCTCTTTT TAAA GAAGGAGGTTTTTATTTATTAATGA TTATTCCTTTGATTG TERM 429 411705 - 411752 + T 100 -17.6 -3.01134 | opp_overlap 411713 411719, overlap 411702 411719 AAATGCTTTAGTTTG TTAATAAATAAAAACCTCTTTT TAAA GAAGGAGGTTTTTATTTATTAA TGATTATTCCTTTGA TERM 430 411744 - 411713 - T 78 -7.5 -4.1552 | opp_overlap 411705 411702 411719, overlap 411719 TAGTTTGTTAATAAA TAAAAACCTCTTT TTAAAG AAGGAGGTTTTTA TTTATTAATGATTAT TERM 431 411734 - 411719 - T 73 -4 -5.47159 | opp_overlap 411705 411702 411719, overlap 411713 GTTAATAAATAAAAA CCTCTT TTTA AAGAAG GAGGTTTTTATTTAT TERM 432 411719 - 411738 + T 79 -5 -5.48514 | opp_overlap 411719 411713, overlap 411705 411702 GTTAATAAATAAAAA CCTCTTTT TAAA GAAGGAGG TTTTTATTTATTAAT UPA3_0378 413169 - 411742 - | aldehyde dehydrogenase (NAD) family protein asnA 414190 - 413201 - | aspartate--ammonia ligase TERM 433 414031 - 414052 + g 79 -10.3 -2.89447 | overlap 414030 414027 CTGCTTTTTGTTTAT GGTCTAAAT GATC ATTTAGACC TGATTGTCCTTCAAC TERM 434 414102 - 414128 + g 71 -4.6 -4.84527 | opp_overlap 414102 414103, overlap 414119 CGTGAAAGATTTAAA TTTTTTGCAAAA TGT TTTTGAAAAGAA TTTTTAATCTCTACA pgsA 414815 - 414168 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 435 414447 - 414434 - G 70 -3.9 -5.16071 | opp_overlap 414434 AACCATCAATAAAAA TATCT CGTA AGATA TTAATAATTGTTAAA asnS 416169 - 414805 - | asparaginyl-tRNA synthetase TERM 436 416249 - 416221 - R 72 -2.6 -5.76237 | gap 1 TATATAAATAAAAAA GCAAAACATCATT GATT AATAA-GTTTCGC TTTAAATTAGTTTTT UPA3_0382 416886 - 416263 - | hypothetical protein UPA3_0383 418549 - 417026 - | hypothetical protein TERM 437 417510 - 417521 + g 72 -3 -5.35222 | TGATCTAATTTTTTA TAGT GAGC ACTA TTTTTTGTACCTTTT pdp 418791 - 420092 + | pyrimidine-nucleoside phosphorylase TERM 438 421711 - 421688 - g 74 -5.4 -4.79223 | opp_overlap 421688 421686 421691, overlap 421691 TTATATTATTAAAAA TGATCAACAA TTTT TTGTTGATGA TGTTTTTAAGGCACC alaS 420123 - 422843 + | alanyl-tRNA synthetase UPA3_0386 422836 - 423279 + | hypothetical protein TERM 439 424188 - 424175 - g 78 -6.7 -4.64595 | opp_overlap 424174 424175 AAACAAAGAAAATAA GCGAT TTAG ATCGC ATTGCTGATACTAAT TERM 440 425395 - 425405 + G 71 -2.6 -5.48054 | opp_overlap 425395, overlap 425385 GTTATTAATTATGAA TTAT TAG ATAA TTTTTTAATTTTACT leuS 423295 - 425715 + | leucyl-tRNA synthetase UPA3_0388 426532 - 425909 - | integrase-recombinase protein TERM 441 426455 - 426473 + g 82 -6.8 -4.7908 | ATTGGCTAAGTTTTT GAATGTTG CAT TAACATTC TTTATTTCTCTTTTT TERM 442 426629 - 426643 + r 77 -5.8 -4.95618 | opp_overlap 426629 TTCCTTTGCATTCAA TAAAAG CCT CTTTTA TTTGTTTTTCATATT UPA3_0389 427153 - 426926 - | hypothetical protein TERM 443 427318 - 427299 - R 100 -9.4 -5.77677 | opp_overlap 427299 TAAAATAATAAAAAA TAGCTCAA TTTT TTGAGCTA TTTAATTTAAATTTT TERM 444 427299 - 427318 + r 84 -9.4 -4.13183 | opp_overlap 427299 TAAAATAATAAAAAA TAGCTCAA TTTT TTGAGCTA TTTAATTTAAATTTT UPA3_0390 428545 - 427352 - | multiple banded antigen UPA3_0391 428856 - 429605 + | hypothetical protein TERM 445 429647 - 429606 - T 75 -6.1 -4.67478 | opp_overlap 429612 429620, overlap 429608 GAAACACAAAAATAA TATAAATAAAAATAGCTCA AAAA TGGGCTTTTTTTATTTATT AAAATTCAAATTCTA TERM 446 429645 - 429608 - T 79 -8.7 -3.90582 | opp_overlap 429612 429620, overlap 429606 AACACAAAAATAATA TAAATAAAAATAGCTCA AAAA TGGGCTTTTTTTATTTA TTAAAATTCAAATTC TERM 447 429612 - 429641 + T 76 -7.3 -4.20918 | opp_overlap 429608 429606, overlap 429620 CAAAAATAATATAAA TAAAAATAGCTCA AAAA TGGGCTTTTTTTA TTTATTAAAATTCAA TERM 448 429620 - 429633 + T 85 -4.5 -6.08342 | opp_overlap 429608 429606, overlap 429612 ATATAAATAAAAATA GCTCA AAAA TGGGC TTTTTTTATTTATTA UPA3_0392 429959 - 429747 - | secreted protein TERM 449 430002 - 430014 + H 70 -4.9 -4.84914 | opp_overlap 430002 TATATTTTAAAACAT TTTTG AAA CAAAA TTTTGTTATATAAAT TERM 450 430459 - 430445 - g 70 -3.6 -5.20783 | ATTTAAATACAAAAA TAGAAT ATA ACTCTA ATTTAAATTCATTAA TERM 451 430468 - 430490 + G 75 -9.4 -2.64878 | opp_overlap 430467 430468 AACTCTAATTTAAAT TCATTAATTT TAA AAATTAATGA TAAATTAATTTATGA TERM 452 430490 - 430468 - g 76 -9.4 -2.85621 | opp_overlap 430468, overlap 430467 AACTCTAATTTAAAT TCATTAATTT TAA AAATTAATGA TAAATTAATTTATGA TERM 453 430742 - 430701 - g 91 -10 -4.3129 | opp_overlap 430701 TAGTCAGCAGCAAAA TTTTTATAATAATCAAAA GGCAAA TTTTAATTATTATAAAAA TCCTTCAAATAAAAC TERM 454 432683 - 432673 - g 70 -4 -5.15634 | CAGCGCATTAAAAAA GAAT TAA ATTC AATTATTAAACATGG polC 430129 - 434457 + | DNA polymerase III, alpha subunit UPA3_0394 434572 - 436212 + | putative lipoprotein TERM 455 436247 - 436291 + T 80 -7.6 -4.39724 | gap 1, opp_overlap 436247 AAGATTATAATACAA TAAAAAATCCGTC-TTATTAT GTTT ATAACAAAGATGGATTTTTTA TTATTTATTTAATTT TERM 456 436291 - 436247 - T 73 -7.6 -3.79482 | gap 1, opp_overlap 436247 AAGATTATAATACAA TAAAAAATCCGTCTT-ATTAT GTTT ATAACAAAGATGGATTTTTTA TTATTTATTTAATTT UPA3_0395 437095 - 436292 - | hypothetical protein UPA3_0396 437601 - 437095 - | hypothetical protein TERM 457 437501 - 437517 + g 86 -8.1 -4.58283 | opp_overlap 437499 437501 GCATCAAGATTAACA CAAACAA AAT TTGTTTG TTTTTGAAAAGCTTC TERM 458 437517 - 437501 - G 70 -8.1 -3.26531 | opp_overlap 437501, overlap 437499 GCATCAAGATTAACA CAAACAA AAT TTGTTTG TTTTTGAAAAGCTTC TERM 459 437518 - 437537 + g 74 -6.6 -4.42974 | opp_overlap 437499 AACAAAATTTGTTTG TTTTTGAA AAGC TTCAAAAA TTTGTTGTGTATGAA uvrC 439523 - 437769 - | excinuclease ABC, C subunit TERM 460 438758 - 438774 + g 70 -2.4 -5.52384 | opp_overlap 438758 CATAATTAAAAATTA TAATTA CTAAA TAATTA TTTTTTTCATAAAAA TERM 461 439560 - 439544 - R 74 -8.1 -3.75863 | overlap 439535 AAAACTTTTATCAAA TAAATCC TGG GGATTTA AGGCGTTAATAATTA UPA3_0398 440497 - 439523 - | NAD+ dependent glycerol-3-phosphate dehydrogenase UPA3_0399 441833 - 440505 - | GTP-binding protein EngA UPA3_0400 441969 - 443066 + | ComEC/Rec2 family protein TERM 462 443074 - 443061 - f 75 -3.9 -5.69023 | opp_overlap 443061 AAAATATTAAAAAAA GTATA AGAG TATAC TATTTTTCAAATTCG mraZ 443142 - 443579 + | MraZ protein mraW 443569 - 444495 + | S-adenosyl-methyltransferase MraW TERM 463 445341 - 445381 + G 76 -6.5 -4.59081 | opp_overlap 445341, overlap 445332 445372 TGCGGATATTGAAAA TACTTTTTTAAAAATTTTT AAA GAACATTTTGAAAAAAGTA TTTTATCTCAATTTG UPA3_0403 444514 - 445695 + | hypothetical protein TERM 464 445723 - 445750 + F 84 -7.2 -4.96762 | opp_overlap 445730, overlap 445730 AAGTATACAATTATT AAAAAAACTCAT TTTT ATGAGTTTTTTG TTTTTATAATATATG TERM 465 445730 - 445743 + F 86 -5.3 -5.98675 | opp_overlap 445730, overlap 445723 CAATTATTAAAAAAA CTCAT TTTT ATGAG TTTTTTGTTTTTATA TERM 466 445743 - 445730 - f 82 -5.3 -5.58074 | opp_overlap 445730 445723 CAATTATTAAAAAAA CTCAT TTTT ATGAG TTTTTTGTTTTTATA TERM 467 446036 - 446071 + G 82 -6.4 -5.03314 | overlap 446037 TGATTGTATTATGCT ATTTGAACAACAAT TAAATGCT ATTGTTGTTCAAAA TTTTTTAAAGATCAA TERM 468 446037 - 446070 + G 84 -9.9 -3.61506 | overlap 446036 GATTGTATTATGCTA TTTGAACAACAAT TAAATGCT ATTGTTGTTCAAA ATTTTTTAAAGATCA UPA3_0404 445791 - 446666 + | hypothetical protein TERM 469 448530 - 448547 + G 73 -7.1 -4.13343 | opp_overlap 448525 448533 TTATACAAACTTTAA TCATCTT TTAA AAGATGA TTTTAAAAAATTTAT TERM 470 448818 - 448837 + G 82 -8 -4.34285 | opp_overlap 448816 448818, overlap 448815 CAAACAACCAATAGA GATTTTCA ATGT TGAAAATC TTGTTTATTTAAATA TERM 471 448837 - 448818 - g 70 -8 -3.24858 | opp_overlap 448818 448815, overlap 448816 CAAACAACCAATAGA GATTTTCA ATGT TGAAAATC TTGTTTATTTAAATA UPA3_0405 446671 - 450525 + | hypothetical protein UPA3_0406 450586 - 451401 + | hypothetical protein TERM 472 451408 - 451425 + F 100 -8.5 -5.61596 | opp_overlap 451403 451408 AGAGTATAAATATAA CAGGTTT GTTT AAACCTG TTTTTTTATGACAAT TERM 473 451425 - 451408 - f 79 -8.5 -3.92485 | opp_overlap 451408, overlap 451403 AGAGTATAAATATAA CAGGTTT GTTT AAACCTG TTTTTTTATGACAAT TERM 474 452533 - 452499 - g 77 -5.2 -5.05782 | opp_overlap 452508 ATTTACGGCAAAAAA TTGAAAGAATTCAACA TGA TATTGAATTTTATCAA TCTGAGGGTAAGTAT TERM 475 453590 - 453568 - g 80 -5 -5.31275 | opp_overlap 453574 TCGTATTACAAAAAA CATAAATTAT AAA ATAAATTATG ATCGTGAACTAGATC UPA3_0407 451508 - 453622 + | chaperone ClpB TERM 476 455396 - 455360 - g 85 -5.3 -5.32565 | GAATTAATGAAAAAA GTAGTTAATAACAAAAC TTT ATATCGTTACCAACTAC AAAAAAGTAATAATT UPA3_0408 453776 - 455560 + | hypothetical protein acpS 455937 - 455590 - | holo-(acyl-carrier-protein) synthase UPA3_0410 456241 - 455942 - | hypothetical protein TERM 477 456185 - 456199 + g 100 -5.8 -5.98675 | opp_overlap 456184 456185 AGGATCGTAACCAAC TTTGTT AGC AACAAA TTTTTTATTTTTATA UPA3_0411 456573 - 456292 - | hypothetical protein UPA3_0412 456853 - 456575 - | hypothetical protein rnhC 457853 - 456903 - | ribonuclease HIII TERM 478 457874 - 457892 + H 72 -7.6 -3.6292 | ACCTTTTATTAATGT CTTATAAT AAA ATTATAAG TTTAAACGTATTTAT TERM 479 458294 - 458308 + G 90 -5.8 -5.54894 | overlap 458297 TCATAACAAACTTGA TCTTTT ACA AAAAGA TTTTTTTGATAAATT UPA3_0414 457953 - 458558 + | hypothetical protein TERM 480 458582 - 458636 + T 93 -11.2 -3.79765 | opp_overlap 458596, overlap 458596 ATAATTAAGATACAG TTGCATTATAAAAACCCTTGGATT CATAAAT AATCTAAGGGTTTTTATAATTTGA TATTCTTTTGTATGT TERM 481 458596 - 458622 + T 86 -7.4 -5.05228 | opp_overlap 458596, overlap 458582 GTTGCATTATAAAAA CCCTTGGATT CATAAAT AATCTAAGGG TTTTTATAATTTGAT TERM 482 458622 - 458596 - T 70 -5.2 -4.91109 | opp_overlap 458582 458596 GTTGCATTATAAAAA CCCTTGGATT CATAAAT AATCTAAGGG TTTTTATAATTTGAT UPA3_0415 459697 - 458651 - | hemin permease UPA3_0416 460719 - 459700 - | ferrichrome ABC transporter TERM 483 459974 - 459960 - G 77 -8.6 -3.56836 | AAATGATGCTTGAAA CAGTTG CGA CAACTG CAAAAAAAGCTGTTA TERM 484 460264 - 460276 + g 72 -6.3 -4.19735 | opp_overlap 460263 AATTGGTTTAAAACT TGCTT CTA AAGCA TTTCCTTTTACCAAG UPA3_0417 462178 - 460730 - | putative ABC substrate-binding protein - iron trmU 463416 - 462259 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 485 463565 - 463592 + G 78 -4.2 -5.39755 | gap 1, overlap 463568 463569 TTTCTTCATTAATTG GGATTAG-TGCGA TTG TCGCAACTAGTAC TTTTTTGTCATTATC UPA3_0419 463525 - 464421 + | hypothetical protein TERM 486 464502 - 464482 - T 79 -7.1 -4.70659 | opp_overlap 464475 464484 GTTCATATTTAAAAA TATTTTTAA TAA TTAAAAATA AATTCAAAAAAAATA TERM 487 464527 - 464559 + T 100 -10.9 -5.29385 | opp_overlap 464527 AAAATAATATAAAAA TAAGTTTAATGTTAT CAA AAAACATTAAACTTA TTTTTTAGTTGACTT TERM 488 464559 - 464527 - T 100 -10.9 -5.25799 | opp_overlap 464527 AAAATAATATAAAAA TAAGTTTAATGTTAT CAA AAAACATTAAACTTA TTTTTTAGTTGACTT UPA3_0420 465458 - 464652 - | integrase-recombinase protein UPA3_0421 466291 - 465518 - | hypothetical protein UPA3_0422 466506 - 467702 + | hypothetical protein TERM 489 467784 - 467756 - T 81 -4 -6.02919 | gap 1, opp_overlap 467756 GCATAAATAAAAAAA GTGAA-AGCAATT TATA AAATGCTATTCAC TTTTTTTATTTTATT TERM 490 467756 - 467784 + T 84 -4 -6.17669 | gap 1, opp_overlap 467756 GCATAAATAAAAAAA GTGAA-AGCAATT TATA AAATGCTATTCAC TTTTTTTATTTTATT grpE 468451 - 467795 - | co-chaperone GrpE dnaJ 469578 - 468451 - | chaperone protein DnaJ TERM 491 469669 - 469643 - R 100 -8.2 -5.4593 | CTAAAATAATAAAAA TTAGCAATCA TCATATC TGATTGCTAA AAATAATCATAATTA UPA3_0425 470155 - 469706 - | hypothetical protein UPA3_0426 471056 - 470136 - | hypothetical protein TERM 492 471138 - 471166 + H 79 -8.3 -4.20084 | opp_overlap 471138, overlap 471141 TTAATAATTATATTA CAACATTATTACG AGT CTTAGTAATGTTG TTTTAAGTAAATAAT TERM 493 471553 - 471536 - g 70 -2.1 -5.47218 | CCTTATCTAAAAAAA TTAAATT ATCT AATCTAA GTGTTAATGAACGTC TERM 494 472768 - 472757 - g 72 -3 -5.3104 | GTATGAAAAATAAAA CTTT TTAT AAAG AAAAAGACATTATGG ileS 471208 - 473910 + | isoleucyl-tRNA synthetase TERM 495 474166 - 474179 + G 79 -8.1 -3.98913 | GCTTACACTGCAATG CCTGG TTTG CCAGG TTGTTTACATGTAGG UPA3_0428 473914 - 474876 + | O-sialoglycoprotein endopeptidase metK 474876 - 476030 + | methionine adenosyltransferase TERM 496 476041 - 476066 + T 71 -3.2 -5.53991 | opp_overlap 476041 AATAAATTTAAAAAA CGATACGCAC AATAAA GGGCATATCG TTTTTTTAATAAATA TERM 497 476066 - 476041 - T 81 -5.4 -5.25805 | opp_overlap 476041 AATAAATTTAAAAAA CGATACGCAC AATAAA GGGCATATCG TTTTTTTAATAAATA mutM 477060 - 476233 - | formamidopyrimidine-DNA glycosylase TERM 498 476655 - 476691 + g 85 -10.6 -3.22774 | gap 1, opp_overlap 476654 476655, overlap 476658 CTAGCGGATCTAAAG CAATCTTTTTTA-ATTC TTTT GAATCTAAAAAAGATTG TTGCTCATAAATGTG TERM 499 476691 - 476655 - G 82 -10.6 -2.79327 | gap 1, opp_overlap 476655 476658, overlap 476654 CTAGCGGATCTAAAG CAATCTTTTTTA-ATTC TTTT GAATCTAAAAAAGATTG TTGCTCATAAATGTG TERM 500 477089 - 477126 + r 70 -5.3 -4.86385 | gap 1, opp_overlap 477089 477102 TTATATAGCAGATTA TAATATGGATAAATTATT TAT AATAATTT-TGCATATTA TTTATTTTTAAAGAT exo 477971 - 477102 - | hypothetical protein UPA3_0433 480884 - 477975 - | DNA polymerase III subunit alpha TERM 501 478619 - 478645 + g 71 -4.7 -4.89966 | gap 1, overlap 478622 CATCACCAAAACCCT TAATT-GTTTTG AAAC CAAAACGAATTA TTTGTTTTTGAGTAT TERM 502 478965 - 478981 + g 85 -5.3 -5.38348 | ATTGATAAAATCATC TTTTAAT TGG ATTAAAA TTTTTTCATCTTTTT UPA3_0434 481096 - 480884 - | hypothetical protein UPA3_0435 482146 - 481181 - | DHH family protein TERM 503 481578 - 481592 + g 73 -5.8 -4.58395 | TGTTGATAAATTTGA TAATGT TTG ACATTA TTTTTAAAAAATCAA thiI 483336 - 482164 - | thiamine biosynthesis/tRNA modification protein ThiI UPA3_0437 484180 - 483314 - | hypothetical protein TERM 504 484092 - 484102 + g 85 -5.4 -5.31877 | opp_overlap 484089 484092 ATTTTTGCAAAATAT CGTT GAT AACG TTTTTTATAATCGCT UPA3_0438 484295 - 485041 + | hypothetical protein hrcA 485028 - 486101 + | heat-inducible transcription repressor HrcA TERM 505 486189 - 486178 - g 75 -3 -5.50925 | opp_overlap 486178 AATGAATATAAAAAA GAAT TAGA ATTC TTAATTGCAACAATT TERM 506 486364 - 486380 + G 70 -2.3 -5.4833 | opp_overlap 486364 486359 486365, overlap 486365 AAAGAATTAATAAAA GTACTAA ATA TTAGTAA TTTTTTATTGAATAA UPA3_0440 486091 - 486594 + | hypothetical protein UPA3_0441 486606 - 487316 + | hypothetical protein UPA3_0442 487309 - 488073 + | hypothetical protein TERM 507 488176 - 488200 + T 86 -6.5 -5.27779 | overlap 488179 ATTATGTTAACATAG TGTCTCCAAAT ACA ATTTGGAGTTA TTTTTTCATCTTAGA TERM 508 488179 - 488197 + T 95 -10.4 -4.71318 | overlap 488176 ATGTTAACATAGTGT CTCCAAAT ACA ATTTGGAG TTATTTTTTCATCTT UPA3_0443 488428 - 488231 - | hypothetical protein UPA3_0444 488679 - 489356 + | hypothetical protein UPA3_0445 489413 - 489964 + | hypothetical protein TERM 509 489986 - 489956 - T 95 -7.8 -5.51165 | opp_overlap 489957, overlap 489957 AAAATTTTAAAAAAA TTCTTTTAATTATC AAA GACAATTAAAAGAT TATTTAAATAATTTT TERM 510 489957 - 489985 + T 82 -9.1 -3.99347 | opp_overlap 489956 489957 AAATTTTAAAAAAAT TCTTTTAATTATC AAA GACAATTAAAAGA TTATTTAAATAATTT TERM 511 489985 - 489957 - T 93 -11.3 -3.88259 | opp_overlap 489957, overlap 489956 AAATTTTAAAAAAAT TCTTTTAATTATC AAA GACAATTAAAAGA TTATTTAAATAATTT TERM 512 490149 - 490116 - T 81 -5.6 -5.15526 | gap 1, opp_overlap 490116 ATAGAAAATTAAAAA CCATTTATAAGTATT TTTAT AAC-CTTATAAATGG TTTTTATTGTTTAAT TERM 513 490116 - 490149 + T 73 -4.1 -5.39905 | opp_overlap 490116 ATAGAAAATTAAAAA CCATTTATAAG TATTTTTATAAC CTTATAAATGG TTTTTATTGTTTAAT UPA3_0446 490688 - 490176 - | urease TERM 514 490781 - 490759 - R 100 -9.3 -5.50774 | opp_overlap 490759 TATAAGAAATAAAAA CCTTAAAAC TTAAC GTTTTAAGG TTTTTTAAATCTTTT TERM 515 490759 - 490781 + r 95 -9.3 -5.19916 | opp_overlap 490759 TATAAGAAATAAAAA CCTTAAAAC TTAAC GTTTTAAGG TTTTTTAAATCTTTT ureD 491658 - 490795 - | urease accessory protein UreD ureG 492288 - 491668 - | urease accessory protein UreG UPA3_0449 493077 - 492370 - | urease accessory protein UreF UPA3_0450 493513 - 493064 - | urease accessory protein UreE ureC 495374 - 493578 - | urease, alpha subunit ureB 495794 - 495420 - | urease, beta subunit ureA 496146 - 495841 - | urease, gamma subunit UPA3_0454 496358 - 496230 - | hypothetical protein UPA3_0455 496448 - 497611 + | ferrichrome transport ATP-binding protein TERM 516 497666 - 497609 - f 83 -3.8 -6.14618 | opp_overlap 497620 497625 497656, overlap 497613 497619 497620 GATAAAACAAAAAAA TAAATCAAAATTAAAATAAAAACCGC ATTGAA GTGGTTTTTATTTTATTATTAATTAA TAATTTATAAAAAAG TERM 517 497662 - 497613 - f 76 -4.6 -5.36181 | opp_overlap 497620 497625 497656, overlap 497609 497619 497620 AAACAAAAAAATAAA TCAAAATTAAAATAAAAACCGC ATTGAA GTGGTTTTTATTTTATTATTAA TTAATAATTTATAAA TERM 518 497656 - 497619 - f 74 -5.8 -4.78512 | opp_overlap 497620 497625, overlap 497613 497609 497620 AAAAATAAATCAAAA TTAAAATAAAAACCGC ATTGAA GTGGTTTTTATTTTAT TATTAATTAATAATT TERM 519 497655 - 497620 - f 78 -9.3 -3.43447 | opp_overlap 497620 497625, overlap 497619 497613 497609 AAAATAAATCAAAAT TAAAATAAAAACCGC ATTGAA GTGGTTTTTATTTTA TTATTAATTAATAAT TERM 520 497620 - 497655 + F 95 -11.5 -3.84246 | opp_overlap 497620 497619 497613 497609, overlap 497625 AAAATAAATCAAAAT TAAAATAAAAACCGC ATTGAA GTGGTTTTTATTTTA TTATTAATTAATAAT TERM 521 497625 - 497650 + F 84 -7 -4.95167 | opp_overlap 497620 497619 497613 497609, overlap 497620 AAATCAAAATTAAAA TAAAAACCGC ATTGAA GTGGTTTTTA TTTTATTATTAATTA rrmJ 497694 - 498437 + | ribosomal RNA large subunit methyltransferase J TERM 522 499490 - 499479 - g 75 -3 -5.57888 | opp_overlap 499479 AGTAAAAAAAGAAAA TGTT AAAA AACA ATTATTTTTATTTGA UPA3_0457 498427 - 499509 + | DNA polymerase IV (Pol IV) UPA3_0458 499850 - 499521 - | holliday junction ATP-dependent DNA helicase RuvB UPA3_0459 499964 - 500215 + | hypothetical protein TERM 523 500268 - 500237 - T 82 -4.6 -5.8901 | opp_overlap 500239, overlap 500239 500267 ATATAAAATAAAAAA TATCTACTTTAG TTTTTGTG CTAAAGTAGATT TTATTTTTAAAATAA TERM 524 500239 - 500266 + T 93 -7.9 -5.27023 | opp_overlap 500237 500239 ATAAAATAAAAAATA TCTACTTTAGT TTTTGT GCTAAAGTAGA TTTTATTTTTAAAAT TERM 525 500266 - 500239 - T 79 -7.2 -4.55111 | opp_overlap 500239, overlap 500237 ATAAAATAAAAAATA TCTACTTTAG TTTTTGTG CTAAAGTAGA TTTTATTTTTAAAAT UPA3_0460 501796 - 500297 - | hypothetical protein UPA3_0461 503096 - 501744 - | hypothetical protein TERM 526 502430 - 502420 - GR 74 -5.4 -4.84761 | opp_overlap 502420 ATAGGCGCAGAAAAA CTAG TAC CTAG ATTTATATTTTTATC UPA3_0462 504249 - 503050 - | hypothetical protein TERM 527 504374 - 504351 - R 76 -4.7 -5.41143 | opp_overlap 504346 504351 TAGGTGTTAAAAAAA GTATTAGTC AAATAA AACTAATAC TTTTCTCAATTTAGT UPA3_0463 506526 - 504640 - | putative lipoprotein TERM 528 506660 - 506634 - R 89 -6 -5.50723 | opp_overlap 506635 506650, overlap 506657 TTATTAAAATAAAAA TCTACTCTAG TTTTATT CTAAAGTAGA TTGATCTAAAGTTAG UPA3_0464 506858 - 506682 - | hypothetical protein UPA3_0465 507475 - 507050 - | hypothetical protein UPA3_0466 508284 - 508658 + | type I restriction enzyme S protein TERM 529 508726 - 508716 - T 75 -4 -5.57888 | opp_overlap 508716 AGTAAAAAAAGAAAA TGTT AAA AACA ATTATTTTTATTTGA ruvB 509672 - 508734 - | holliday junction DNA helicase RuvB TERM 530 509489 - 509512 + g 74 -6.8 -4.25606 | AATTAACATTCATTT CATTAGCAAT TATA AGTGCTAATG TTGTTTTCCCTGTTC UPA3_0468 510249 - 509662 - | holliday junction ATP-dependent DNA helicase RuvA UPA3_0469 511454 - 510291 - | hypothetical protein TERM 531 510545 - 510559 + g 79 -8.6 -3.66117 | opp_overlap 510544 510542 510545, overlap 510542 AAGGGACAAAATTAG TTGCTG TGA CAGCAA TATTTGTATAATTAA TERM 532 510559 - 510545 - G 70 -8.6 -2.51193 | opp_overlap 510545 510542, overlap 510544 510542 AAGGGACAAAATTAG TTGCTG TGA CAGCAA TATTTGTATAATTAA TERM 533 510750 - 510763 + g 70 -3.9 -5.12971 | ATTTTGATTATTTTT TTGAA TTAA TTCAA TTTTTGTTAAATATT TERM 534 511525 - 511510 - R 100 -9 -5.45652 | opp_overlap 511512 ATTCCTAATAAAAAA GAAGGG CACC CCCTTC TAAAAATTTTACTTT UPA3_0470 512550 - 511534 - | hypothetical protein TERM 535 512661 - 512681 + r 79 -3.4 -6.04953 | TCTAATAAGCACGTG CAAATAAA GTCAA TTTGTTTG TTTTTTTATTTGTAT proS 514065 - 512647 - | prolyl-tRNA synthetase UPA3_0472 514558 - 514091 - | NifU family SUF system FeS assembly protein UPA3_0473 515753 - 514545 - | aminotransferase NifS UPA3_0474 515965 - 519351 + | hypothetical protein TERM 536 519841 - 519828 - g 74 -2.5 -5.79588 | overlap 519839 TTAAAACTAAAAAAA TTATA TGAA TATAA AATTAAAAATAATTT UPA3_0475 519351 - 520010 + | D-ribulose-5-phosphate 3 epimerase TERM 537 520108 - 520095 - T 76 -3.8 -5.87996 | opp_overlap 520088 520084 520095, overlap 520087 520084 520079 TAATTAATAAAAAAA CACC ACTGCA GGTG TTTTTTATTATTTAA TERM 538 520095 - 520108 + T 76 -3.8 -5.72254 | opp_overlap 520095 520087 520084 520079, overlap 520088 520084 TAATTAATAAAAAAA CACC ACTGCA GGTG TTTTTTATTATTTAA pheT 522455 - 520137 - | phenylalanyl-tRNA synthetase, beta subunit TERM 539 520664 - 520678 + g 77 -5.8 -4.77896 | opp_overlap 520657 520664 520675, overlap 520675 CAAAATTATTAACTA TTAATG AAT CATTAA TTTTTGAATTAATTA TERM 540 520751 - 520768 + g 71 -7.1 -3.88832 | opp_overlap 520751, overlap 520749 AATCAACTGGATTAA TCTTTGA AATC TCAAAGA TATTTTCTAATTCAT pheS 523488 - 522487 - | phenylalanyl-tRNA synthetase, alpha subunit UPA3_0478 523965 - 523495 - | hypothetical protein nadE 524725 - 523958 - | NAD+ synthetase UPA3_0480 526040 - 524733 - | GTP-binding protein TERM 541 525203 - 525215 + g 72 -6.3 -4.21631 | opp_overlap 525203, overlap 525192 CTATTTTATTAGCAA CCAAT ACA ATTGG TTTGTTAACTAAATT UPA3_0481 526861 - 526043 - | hypothetical protein fmt 527845 - 526928 - | methionyl-tRNA formyltransferase TERM 542 527147 - 527125 - G 76 -7.8 -3.76393 | opp_overlap 527125 ATACTTTAATTGAAA CGCCATTATA TTG CATAATAGCG ATTGGTTTATCATAC TERM 543 527697 - 527687 - G 77 -5.4 -4.9138 | ATGATCTAAACAAAA CTGT TTA ACAG GAGAGTAGATAACAT TERM 544 527898 - 527918 + r 71 -6.9 -3.85719 | opp_overlap 527898, overlap 527901 GTAAAGATAGCAAAA TAACTCCTT AAA ATGGAGTTA TTAGTTTGTTTTATT TERM 545 527918 - 527898 - R 79 -6.9 -4.46493 | opp_overlap 527898 527901 GTAAAGATAGCAAAA TAACTCCTT AAA ATGGAGTTA TTAGTTTGTTTTATT UPA3_0483 528644 - 527919 - | hypothetical protein def 528894 - 529490 + | peptide deformylase parE 529497 - 531425 + | DNA topoisomerase IV, B subunit TERM 546 533436 - 533446 + G 74 -5.4 -4.90266 | TTTCTAAATTAGGAT TAGC CCT GCTA TTTTTAGTTCATGAA TERM 547 533803 - 533780 - g 74 -5.4 -4.84642 | opp_overlap 533785, overlap 533781 CCCAAACCAACAAAA CTAGATACTA AAAT TAGTATCTAT GAAAACGATCAAATG TERM 548 533802 - 533781 - g 79 -8.9 -3.497 | opp_overlap 533785, overlap 533780 CCAAACCAACAAAAC TAGATACTA AAAT TAGTATCTA TGAAAACGATCAAAT parC 531431 - 533983 + | DNA topoisomerase IV, A subunit TERM 549 534622 - 534601 - g 76 -8.1 -3.75419 | overlap 534604 AAAATTAATATACAA GAACATCAA ATAC TTGATGCTC CCGGAGTTTGTTTTG UPA3_0487 533983 - 535068 + | hypothetical protein UPA3_0488 535095 - 536273 + | nicotinate (nicotinamide) nucleotide adenylyltransferase mtnN 536283 - 536975 + | MTA/SAH nucleosidase UPA3_0490 537082 - 537333 + | hypothetical protein TERM 550 538055 - 538040 - g 70 -4 -5.14477 | TACACACTTAAAAAA GTCGTT TTAA AACAAC ATAATCAACCAAATA UPA3_0491 537623 - 539950 + | hypothetical protein TERM 551 541313 - 541289 - g 72 -6.6 -4.27694 | opp_overlap 541292, overlap 541286 541300 TGAATTAATAAATAA CAATGGTAAA ACTAA TTTACCATTA GATACTAACTTAACT UPA3_0492 539997 - 543938 + | hypothetical protein TERM 552 544014 - 543964 - T 91 -12.3 -3.38951 | gap 1, opp_overlap 543966 543974, overlap 543966 543974 TTATTAATATAGTAA GATATCAAAACTCCTCTACTAGAA AAAG TTCTT-TAGAGGAGTTTTGATATT ATTTAGCATTTTAAT TERM 553 543966 - 544012 + T 100 -14.9 -4.00411 | gap 1, opp_overlap 543964 543966 543974, overlap 543974 ATTAATATAGTAAGA TATCAAAACTCCTCTACTAGAA AAAG TTCTT-TAGAGGAGTTTTGATA TTATTTAGCATTTTA TERM 554 544012 - 543966 - T 100 -14.9 -3.25877 | gap 1, opp_overlap 543966 543974, overlap 543964 543974 ATTAATATAGTAAGA TATCAAAACTCCTCTACTAGAA AAAG TTCTT-TAGAGGAGTTTTGATA TTATTTAGCATTTTA TERM 555 544004 - 543974 - T 74 -6.3 -4.43815 | gap 1, opp_overlap 543974 543966, overlap 543966 543964 AGTAAGATATCAAAA CTCCTCTACTAGAA AAAG TTCTT-TAGAGGAG TTTTGATATTATTTA TERM 556 543974 - 544004 + T 74 -6.3 -4.52347 | gap 1, opp_overlap 543966 543964 543974, overlap 543966 AGTAAGATATCAAAA CTCCTCTACTAGAA AAAG TTCTT-TAGAGGAG TTTTGATATTATTTA UPA3_0493 545875 - 544025 - | putative lipoprotein TERM 557 546009 - 545983 - R 89 -6 -5.50723 | opp_overlap 545983, overlap 546006 TTATTAAAATAAAAA TCTACTCTAG TTTTATC CTAAAGTAGA TTGATCTAAAGTTAG UPA3_0494 548508 - 546031 - | res subunit family type III restriction enzyme TERM 558 546993 - 547007 + g 72 -7.2 -3.69621 | AAACACGTGTTTTAC CTTCAA TTT TTGAAG TTTCGCCTTCTAAGT TERM 559 547464 - 547478 + g 70 -3.6 -5.25154 | opp_overlap 547464 AAGTCTTTTTAGAAA TTTCTT TTA GAGAAA TTTTATTATTTTTTT TERM 560 547936 - 547951 + g 77 -4.8 -5.20633 | TTCAAATCGTGTTTC TTCTTT TTTA AAAGAA TTTTTGTGTATTTTT UPA3_0495 549596 - 548514 - | DNA methylase UPA3_0496 550101 - 549751 - | type III restriction-modification system: methylase TERM 561 549988 - 549998 + g 72 -3.2 -5.28826 | CACATTATCTAAATC CTGG GGA TCAG TTTTTTCTAAAATTT TERM 562 550000 - 550010 + g 74 -2.6 -5.66868 | overlap 550006 ATCCTGGGGATCAGT TTTT TCT AAAA TTTTTTTAATTAATT TERM 563 550240 - 550213 - R 84 -5 -5.71638 | opp_overlap 550213 TAATAATTAAAAAAA CTTTTAGTAAAT TTAT AATCACTAAAAG TTTTTGAATTTATAT UPA3_0497 553332 - 550255 - | hypothetical protein TERM 564 551508 - 551518 + g 86 -4 -6.04419 | AATTATTATTGATTG TCAA AGG TTGA TTTTTTTCTTCTTTT TERM 565 552470 - 552446 - G 70 -7.3 -3.53224 | opp_overlap 552446 552441 552465 TATGGTTGGTTTAAA CTATTAACATT TAA ATTGTTAATAG TTTTATTATGATATG TERM 566 552446 - 552470 + g 86 -7.3 -4.82819 | opp_overlap 552446, overlap 552441 552465 TATGGTTGGTTTAAA CTATTAACATT TAA ATTGTTAATAG TTTTATTATGATATG UPA3_0498 553643 - 555262 + | hypothetical protein TERM 567 555381 - 555353 - T 100 -16.3 -4.4017 | opp_overlap 555353 TTAATTTTTATAAAA TCCAATACCTTAA GTA TTAAGGTATTGGA TTTTTGTGTTATATA TERM 568 555353 - 555381 + T 100 -16.3 -5.1764 | opp_overlap 555353 TTAATTTTTATAAAA TCCAATACCTTAA GTA TTAAGGTATTGGA TTTTTGTGTTATATA TERM 569 555549 - 555522 - T 86 -9.3 -4.50661 | opp_overlap 555521 AATTTATAACTAAAA GTCTACCTTCT TTTTAT AAAAGGTAGAC AATTTAATTTATGAT UPA3_0499 558371 - 555594 - | hypothetical protein TERM 570 555630 - 555653 + g 93 -6.2 -5.42265 | gap 1, opp_overlap 555636, overlap 555633 TTTTTTATCATTTGG GACTAATGCAA TTT TTGCATTA-TC TTTTTTATCATTTGC TERM 571 555633 - 555651 + g 86 -9 -4.32919 | opp_overlap 555636, overlap 555630 TTTATCATTTGGGAC TAATGCAA TTT TTGCATTA TCTTTTTTATCATTT UPA3_0500 572858 - 558651 - | hypothetical protein TERM 572 560966 - 560991 + g 74 -2.7 -5.65927 | gap 1, overlap 560972 CAACAATTGTAGCAC TACTATCATTTC ATT GAACTG-TAGTA TTTTTTGTTTGAGTA TERM 573 561717 - 561736 + g 72 -8 -3.33792 | overlap 561716 AAATATTTTTCTTGT TTCATCAA TATT TTGATGAA TATTATCTAAATAAT TERM 574 564178 - 564200 + g 82 -7.1 -4.87052 | TTAGTGTAAGCTAAT GTTGGTTTT CTAAC AAAGCCAAC TTTTATTAGTTTATA TERM 575 564371 - 564336 - G 71 -8.6 -2.83715 | overlap 564343 564346 TTCATCATCATTAGA TTTCAAATAAGTAATA ATGC TATCACCTACTTGAAA TACGTGATCTTTAGA TERM 576 566741 - 566766 + g 81 -9.3 -3.76884 | CTTCACCATTGATAT TTTGAAATTTA AGTT TAAATTTCAAA TTCTTACTAATATGT TERM 577 570044 - 570029 - G 75 -7.6 -4.07568 | opp_overlap 570043 CTGGTGCTTTTAAAA CAAGCT TACG AGCTTG ATCGACACCATCATT TERM 578 570529 - 570544 + g 86 -3.4 -5.99154 | TTATTATCATCGGTT TTAAAT GTTA ATTTAA TTTTTTTATTTGCTA TERM 579 572789 - 572800 + g 77 -2.2 -5.97979 | opp_overlap 572778, overlap 572778 GCAATAAGAAAAGAC GTTG CTTA CGAC TTTTTTTATTATTAT TERM 580 572970 - 572956 - R 100 -3.5 -7.14698 | AAAAAAAAAAAAAAA GACCA TTGAT TGGCC TTTGTACTTATAAAA UPA3_0501 576396 - 573085 - | putative lipoprotein TERM 581 573581 - 573613 + g 95 -11.5 -3.66999 | AATTCAATTGTTTGG TGCTCATAGTCGATT TTT AATTGGTTATGAGCA TTTAAATCAATACAT TERM 582 576487 - 576517 + H 88 -10.6 -3.66999 | opp_overlap 576487 AAAAAAAAAAAAAAA CACTGCTTTTAATA CCT TAATAAAAGCGGTG TTTAAATAAGTGAAT TERM 583 576517 - 576487 - H 100 -8.4 -7.14698 | opp_overlap 576487 AAAAAAAAAAAAAAA CACTGCTTTTAATA CCT TAATAAAAGCGGTG TTTAAATAAGTGAAT TERM 584 577156 - 577127 - g 79 -8.8 -3.6123 | overlap 577125 577123 577128 ATAAAAATAAATACA CTATTGCTATTG ATCAAA CAATAGCAATAA AACATAAAATTCGTA TERM 585 577155 - 577128 - g 78 -10.1 -2.74298 | overlap 577127 577125 577123 TAAAAATAAATACAC TATTGCTATTG ATCAAA CAATAGCAATA AAACATAAAATTCGT ackA 576667 - 577830 + | acetate kinase UPA3_0503 579951 - 577834 - | putative lipoprotein UPA3_0504 581440 - 580136 - | hypothetical protein UPA3_0505 584333 - 581592 - | putative lipoprotein TERM 586 581868 - 581898 + g 73 -5.7 -4.70879 | opp_overlap 581871 GCTAAACGTTCTAGA TAATGAAAATGTT CAATT AGCATTTTTATTA TTTTTAGGCTTTAAA TERM 587 584525 - 584494 - R 100 -10.4 -5.84432 | opp_overlap 584515 TATAATATAAAAAAA TACTTTAAGAACAT TGGG AGGTTCTTAAAGTA AGAATTTAATTTTTA apt 585068 - 584547 - | adenine phosphoribosyltransferase TERM 588 585013 - 585037 + g 74 -5 -5.02715 | opp_overlap 584993 584992 AAAACGATTCCTTTT TTAGGGAAGT CTGGT ACATCCCTGA TTTTTGATTTAATGT UPA3_0507 588100 - 585089 - | putative lipoprotein TERM 589 587961 - 587923 - G 78 -6.8 -4.69656 | opp_overlap 587923, overlap 587918 AATCATTCAATAAAA CTTGTGTTCTTGCTGATA TTT TATCACCAAAATCACCAG TTTTTATATTCTTAT TERM 590 587923 - 587961 + g 77 -4.6 -5.21506 | opp_overlap 587923 587918 AATCATTCAATAAAA CTTGTGTTCTTGCTGATA TTT TATCACCAAAATCACCAG TTTTTATATTCTTAT UPA3_0508 588422 - 588889 + | hypothetical protein TERM 591 588905 - 588894 - g 75 -4.4 -5.243 | GAAATGATTAAAAAA TACG GAAT CGTA GCTATTGTTGGAAAA TERM 592 589266 - 589234 - g 79 -10.1 -3.06618 | overlap 589232 589231 ATAAAGAAAATATTA TTTTAGTCATTTCAA AAG CTGAAATGGCTAAAA ATCAAGATCAAATTG era 588882 - 589784 + | GTP-binding protein Era recO 589784 - 590500 + | DNA repair protein RecO glyS 590534 - 591955 + | glycyl-tRNA synthetase TERM 593 592206 - 592176 - g 77 -5.5 -5.0916 | opp_overlap 592178, overlap 592178 TGCTGAATATAAAAA GATCTCCTATGCT TTAGC AGCACAAGAGATT GTTCAATTAATGAAT TERM 594 592204 - 592178 - g 80 -8.1 -4.17211 | opp_overlap 592178, overlap 592176 CTGAATATAAAAAGA TCTCCTATGCT TTAGC AGCACAAGAGA TTGTTCAATTAATGA TERM 595 592270 - 592256 - g 73 -3.6 -5.28778 | ATCATTTACAAAAAA TTTCTC CAC AAGAAA TTAAAAAAAATAAGG TERM 596 592357 - 592344 - g 73 -3.9 -5.38549 | opp_overlap 592344 TTTAAATAATAAAAA TAACA TTCA TGTTA TTGATTATTTAACTA UPA3_0512 591943 - 593868 + | DNA primase TERM 597 593912 - 593882 - T 84 -5.6 -5.50925 | opp_overlap 593873 593882 AATGAATACAAAAAA GCTTTTTAGTAA TGTTTGT TTACTAGAAAGC TTTTTTTATTATTAA TERM 598 593882 - 593912 + T 100 -7.8 -5.95946 | opp_overlap 593882, overlap 593873 AATGAATACAAAAAA GCTTTTTAGTAA TGTTTGT TTACTAGAAAGC TTTTTTTATTATTAA UPA3_0513 611358 - 593947 - | hypothetical protein TERM 599 595936 - 595947 + g 72 -3 -5.34857 | AACTAATGGAGGGTT CAAA GGTA TTTG TTTTCTTTTATTTGG TERM 600 601884 - 601898 + g 73 -5.8 -4.72556 | TTGGTGTTAAATCCT TTAATG TAA CATTAA TTTTATGATTTTTAA TERM 601 602547 - 602565 + g 77 -4.6 -5.09895 | overlap 602544 AGATAGTATCACTTG GTTTGCTT GTG AACCAAAC TTTTTTCACTCGATA TERM 602 608154 - 608170 + g 71 -6.7 -3.90943 | TTGTTTTGGGGTGCT TATTAGT TGT ACTAATA TTTAAATTTAATTTA TERM 603 609786 - 609796 + g 70 -4 -5.12785 | CAACAATCGCAGCTG GTTT ACT AAAC TTTGTTTTTTGATTA UPA3_0514 611586 - 612719 + | hypothetical protein TERM 604 612765 - 612753 - T 100 -6.9 -5.53991 | opp_overlap 612753 TACTCATTAAAAAAA CGGCA CGG CGCCG TTTTTTTTTTTTTTT TERM 605 612753 - 612765 + T 100 -6.2 -7.14698 | opp_overlap 612753 TACTCATTAAAAAAA CGGC ACGGC GCCG TTTTTTTTTTTTTTT rpsD 613426 - 612818 - | ribosomal protein S4 TERM 606 613376 - 613352 - G 75 -7.4 -4.02108 | opp_overlap 613344 613348, overlap 613348 TTTACCAGAATTAAA TTCTTTATTA TTTTC TAATAAAGAA AATCCTAAACGGCGT UPA3_0516 613692 - 615383 + | hypothetical protein TERM 607 615412 - 615394 - T 100 -10.4 -5.66229 | opp_overlap 615394 ATTAATAACAAAAAA TACTAGCT TTA AGCTAGTA TTTTTAATTTTATTT TERM 608 615394 - 615412 + T 100 -10.4 -5.19819 | opp_overlap 615394 ATTAATAACAAAAAA TACTAGCT TTA AGCTAGTA TTTTTAATTTTATTT UPA3_0526 617232 - 616441 - | hypothetical protein UPA3_0527 619467 - 617236 - | ATP-dependent DNA helicase PcrA UPA3_0528 620313 - 619492 - | RDD family protein UPA3_0529 621252 - 620314 - | glycosyltransferase TERM 609 621208 - 621179 - G 74 -6.7 -4.20516 | overlap 621153 TTTTGATTTAATAAA TCTAAAAAATAAT TAAA ATTTTTTTTTAGA TAATGAGTTGTCTTT TERM 610 621328 - 621294 - H 73 -5.3 -5.01497 | gap 1, opp_overlap 621294 621288, overlap 621288 ACTATTATATAAAAA TAAAACTAGAAGCA AAATAAAA TGCT-CTAGTTTTA TTTTAATTAATGGCG TERM 611 621477 - 621462 - H 100 -7.6 -7.00209 | opp_overlap 621462 ACAAAAAAAAAAAAA TCTGCA ACCA TGCAGA TTTTAGTGTATCAAT TERM 612 621462 - 621477 + H 80 -7.6 -4.39568 | opp_overlap 621462 ACAAAAAAAAAAAAA TCTGCA ACCA TGCAGA TTTTAGTGTATCAAT UPA3_0532 621666 - 621869 + | hypothetical protein UPA3_0533 621859 - 623001 + | hypothetical protein UPA3_0534 623024 - 623833 + | hypothetical protein acpP 623850 - 624083 + | acyl carrier protein TERM 613 624261 - 624233 - T 77 -8.2 -4.06864 | opp_overlap 624235, overlap 624235 GCCATATAATAACAA CAGGACTGACAC TTTTT GTATCAGTCCTT TTTTGTTTTTGAAAA TERM 614 624235 - 624259 + T 100 -8.6 -5.93252 | opp_overlap 624235 624233 CATATAATAACAACA GGACTGACAC TTTTT GTATCAGTCC TTTTTTGTTTTTGAA TERM 615 624259 - 624235 - T 88 -10.8 -3.61971 | opp_overlap 624235, overlap 624233 CATATAATAACAACA GGACTGACAC TTTTT GTATCAGTCC TTTTTTGTTTTTGAA TERM 616 625146 - 625166 + T 93 -6.9 -5.42975 | opp_overlap 625146 GATACAAATAAAAAA GAAGCGAAT TAA ATTCACTTC TTTTTCTTTATCTAA TERM 617 625166 - 625146 - T 100 -9.1 -5.76237 | opp_overlap 625146 GATACAAATAAAAAA GAAGCGAAT TAA ATTCACTTC TTTTTCTTTATCTAA UPA3_0537 626556 - 625189 - | cytosol aminopeptidase family protein TERM 618 626480 - 626500 + g 95 -6.9 -5.40474 | TCAGTTGTATTTTCT TCAAAACCT TTT AGGTTGTGA TTTTTTTCAACAGCT UPA3_0538 628972 - 626669 - | cell division protein TERM 619 628056 - 628070 + g 71 -8.6 -2.77538 | overlap 628055 628054 TGTTTATCAATATTG TGGTGA TCT TCACCA AGTTTTTCTTCGAAA UPA3_0539 630659 - 628989 - | hypothetical protein TERM 620 630336 - 630349 + g 71 -2.5 -5.52384 | TTTTTTATTGTTTAC TTTTT GTTC AAAAA TTTTTTTAATAACAA TERM 621 630476 - 630486 + g 86 -4.6 -5.64274 | TAAAAATTCCCTTAA CGCG TTT TGCG TTTTTTTCTAAATAA TERM 622 631070 - 631100 + G 73 -2 -5.66989 | opp_overlap 631071 631095, overlap 631071 AAAACGGTTTGAATC ATTTTGTTATTGTT AAA AATTATAACAAAAA TTTTTTTCGTATTTA TERM 623 632207 - 632195 - g 71 -4.9 -4.87052 | overlap 632187 TACAAATTAATAAAA TTACA TCA TGTAA AATTACCGAAAACCA UPA3_0540 630799 - 632775 + | ABC transporter TERM 624 633073 - 633039 - g 85 -5.3 -5.28755 | gap 1, opp_overlap 633039 AAACAGATCAAAAAA TGATTGA-TATTAGTA TATA CACTAATACTCAACCA TTAATTGAATCTATA UPA3_0542 632780 - 633115 + | hypothetical protein cdsA 634240 - 633104 - | phosphatidate cytidylyltransferase TERM 625 633522 - 633508 - G 72 -4.4 -5.05505 | overlap 633520 ATGACAAACCAAAAA TTATTA ACA TAATAA CAATTGTTGCAATTA TERM 626 633670 - 633652 - G 74 -5.4 -4.8236 | opp_overlap 633653, overlap 633668 633669 CACTTAAAAAAACAA TCATCATT AGC AATAATGA AGTAATTCAACTTCT frr 634802 - 634251 - | ribosome recycling factor pyrH 635527 - 634820 - | uridylate kinase TERM 627 635405 - 635415 + g 70 -4 -5.25805 | opp_overlap 635405, overlap 635412 AATTGATACAATATA TTTC TTA GAAA TTTTTTCAATTTGTT TERM 628 635570 - 635594 + r 90 -8.7 -4.81249 | opp_overlap 635570 ACTACACTATAAAAA TAGAAAGAAAC TTT GTTTCCTTCTA TTTTTACATTTAAAA TERM 629 635594 - 635570 - R 100 -10.9 -4.95758 | opp_overlap 635570 ACTACACTATAAAAA TAGAAAGAAAC TTT GTTTCCTTCTA TTTTTACATTTAAAA tsf 636486 - 635611 - | translation elongation factor Ts TERM 630 636627 - 636589 - H 79 -7.9 -4.23353 | gap 1, opp_overlap 636590 636601, overlap 636601 AAATGAATAAAAATA CAT-TAAAAAAAACACTT TCAA AAGTGTTTTTTTTAGATA ATTTAATGGTGCGCT TERM 631 636590 - 636625 + H 73 -8.6 -2.98493 | opp_overlap 636589 636601, overlap 636601 AATGAATAAAAATAC ATTAAAAAAAACACTT TCAA AAGTGTTTTTTTTAGA TAATTTAATGGTGCG TERM 632 636614 - 636601 - H 86 -5.3 -5.92337 | opp_overlap 636590 636601, overlap 636589 ATACATTAAAAAAAA CACTT TCAA AAGTG TTTTTTTTAGATAAT TERM 633 636601 - 636614 + H 84 -5.3 -5.82316 | opp_overlap 636601 636589, overlap 636590 ATACATTAAAAAAAA CACTT TCAA AAGTG TTTTTTTTAGATAAT TERM 634 636835 - 636796 - H 100 -16 -3.1082 | gap 1, opp_overlap 636803, overlap 636799 636803 636826 TACTGAGCTAACAGA GCATAAACCCCTACCTACC CAA AGTAGATAGGGGTTTA-GC TAAATCCCACTAATA TERM 635 636833 - 636799 - H 100 -17.4 -2.76322 | opp_overlap 636803, overlap 636796 636803 636826 TGAGCTAACAGAGCA TAAACCCCTACCTACC CAA AGTAGATAGGGGTTTA GCTAAATCCCACTAA TERM 636 636803 - 636829 + H 90 -10.9 -3.6682 | opp_overlap 636799 636796 636803 636826 CTAACAGAGCATAAA CCCCTACCTAC CCAAA GTAGATAGGGG TTTAGCTAAATCCCA TERM 637 636829 - 636803 - H 100 -13.8 -4.06505 | opp_overlap 636803, overlap 636799 636796 636826 CTAACAGAGCATAAA CCCCTACCTACC CAA AGTAGATAGGGG TTTAGCTAAATCCCA TERM 638 637021 - 637057 + H 78 -6.2 -4.88736 | gap 1, opp_overlap 637027 637030, overlap 637027 ACTGAGCTAGCACTC CAC-AAATAATACTTAA ATTT TTAAGTATTACTTCGTG TTTTTATAAATGGTG TERM 639 637050 - 637027 - H 79 -8.4 -3.90318 | opp_overlap 637021 637027, overlap 637030 CTAGCACTCCACAAA TAATACTTAA ATTT TTAAGTATTA CTTCGTGTTTTTATA TERM 640 637027 - 637050 + H 71 -8.4 -2.77439 | opp_overlap 637027 637030, overlap 637021 CTAGCACTCCACAAA TAATACTTAA ATTT TTAAGTATTA CTTCGTGTTTTTATA TERM 641 637264 - 637292 + H 73 -4.8 -5.1971 | overlap 637287 AAATTATAGTTATTT TTTTAAAAAATG TCAAT CTTTTTTTAAAA TTTTTAATTTTTAAT TERM 642 637378 - 637354 - H 76 -8.1 -3.91858 | opp_overlap 637353, overlap 637374 TATATATGTTATAAA TTTTATAATCT CAA AGACTATAAAA AATATTTTTAATAAG TERM 643 638264 - 638287 + G 70 -5.4 -4.56597 | opp_overlap 638264 CTTTATTAGGAGTAA TTGTTGGAAT TATT ATTCAAACAA TTTTTAAAAAAACAC UPA3_0552 637414 - 638469 + | ferrichrome ABC transporter UPA3_0553 638471 - 639496 + | ferric anguibactin transport system permerase protein TERM 644 639493 - 639481 - f 76 -3.5 -5.76949 | overlap 639490 TATTGTTAAAAAAAA TAAAT CAG ATTTA TAGTAAAATATACAA TERM 645 641143 - 641119 - g 70 -5.2 -4.64464 | opp_overlap 641119 TAAACCAAATGAAAA TAATAATTGA ATTGA CCAATTATTA TAATTTTGTTTATTT UPA3_0554 639536 - 641146 + | putative ABC substrate-binding protein - iron UPA3_0555 641218 - 641436 + | hypothetical protein TERM 646 641473 - 641510 + T 100 -6.6 -5.61881 | opp_overlap 641473 TTAATTGATTAAAAA CATTAAGAAGTACA CCCTAATAAA TGTATTTCTTAATG TTTTTATTTTTCGAA TERM 647 641510 - 641473 - T 81 -6.5 -4.77157 | opp_overlap 641473 TTAATTGATTAAAAA CATTAAGAAGTACACCC TAAT AAATGTATTTCTTAATG TTTTTATTTTTCGAA UPA3_0556 643343 - 641550 - | hypothetical protein TERM 648 641602 - 641619 + g 73 -3.5 -5.30616 | overlap 641597 641603 TATTGATTAGTAATT TGATTAT CTTT ATAATCG TTTTTATTTAAATAC TERM 649 642280 - 642266 - G 70 -3.6 -5.18355 | TTGAAAAACCAAAAA TAATTG CTG CAATCA TTAAATAAACAAACA TERM 650 642764 - 642733 - G 70 -2.4 -5.4833 | gap 1, overlap 642734 TTACCTAATAAAAAA CTTGTCAC-TAAACA AAT TGTTCATGTGGCAAA ATCTAAAATAATAGT TERM 651 643402 - 643431 + r 82 -9.7 -3.66908 | opp_overlap 643402, overlap 643391 643398 CCATTAATATAAAAA TATTATTTAATAT GTGG ATATTAAATAATA TTAATTTTGACGAAC TERM 652 643431 - 643402 - R 95 -9.7 -5.1244 | opp_overlap 643391 643402 643398 CCATTAATATAAAAA TATTATTTAATAT GTGG ATATTAAATAATA TTAATTTTGACGAAC UPA3_0557 645234 - 643432 - | hypothetical protein pepF2 647132 - 645297 - | oligoendopeptidase F TERM 653 646558 - 646577 + g 79 -3.6 -5.8096 | opp_overlap 646549 646558 646573, overlap 646573 GCAACATAAAGATCA GTTTGATT TTTA AAACAAAC TTTTTGTTTTTTATA TERM 654 646573 - 646583 + g 73 -4 -5.43621 | opp_overlap 646558 646573, overlap 646558 GTTTGATTTTTAAAA CAAA CTT TTTG TTTTTTATAGTTTAT TERM 655 647198 - 647171 - R 76 -3.5 -5.72616 | opp_overlap 647171 AGTTATAGAAAAAAA TGACCAAGTTT ACTAAA AGACTTAGTCA TTTTTTGTTTTTTGT TERM 656 647171 - 647198 + r 79 -3.5 -6.07374 | opp_overlap 647171 AGTTATAGAAAAAAA TGACCAAGTTT ACTAAA AGACTTAGTCA TTTTTTGTTTTTTGT tuf 648411 - 647227 - | translation elongation factor Tu TERM 657 647640 - 647651 + g 75 -4.4 -5.15381 | TAAACATTTCAATTC CTGT AACA ACAG TTTTTTGAGTGTCTT TERM 658 648480 - 648470 - R 74 -5.4 -4.90002 | opp_overlap 648470 648465 648474, overlap 648465 648474 GAATACATAATAAAA GGTA TTA TACC TTATAATTATAACAT fusA 650614 - 648548 - | translation elongation factor G TERM 659 648850 - 648882 + g 76 -7.1 -4.37886 | CTGGTTTGCATACTT TTGCTGCTTCTTT AAAAGCA AGAGATGCAGCAA TTTTATAAGCCATAC TERM 660 649423 - 649444 + g 77 -2.3 -5.86061 | overlap 649417 CAGGTTCTGCAAATA CCATTTGTT CTAA AATAACTGG TTTTTTTTCATCACA TERM 661 649569 - 649579 + g 79 -4 -5.65678 | opp_overlap 649569 ATTTTTACAAGACGA GAAA TTC TTTC TTTTTTATCTTTTGT rpsG 651108 - 650641 - | ribosomal protein S7 rpsL 651561 - 651136 - | ribosomal protein S12 TERM 662 651711 - 651689 - R 91 -5.7 -5.74086 | opp_overlap 651689 AAAGTAAATAAAAAA GAGCAAAAA CAAAT TTTTTACTC TTTTTTTAGGATTTA TERM 663 651689 - 651711 + r 71 -3.5 -5.49809 | opp_overlap 651689 AAAGTAAATAAAAAA GAGCAAAAA CAAAT TTTTTACTC TTTTTTTAGGATTTA UPA3_0563 653258 - 651747 - | 5'-nucleotidase TERM 664 652861 - 652883 + g 71 -2.7 -5.53288 | overlap 652862 ATATTGCTTATATTT AGTGTTGTT ACATA AACAGCACC TTTTTTTAAATTAGC TERM 665 653204 - 653163 - G 71 -8.3 -2.85999 | gap 1, opp_overlap 653163 TGATTCGATATTAGA GTTAGTACAAGCAGTAGCTG TAG CAA-TAATACTTGTACTAAC TATTATTGAACCTAA UPA3_0564 656384 - 653469 - | hypothetical protein TERM 666 653917 - 653940 + g 74 -5.4 -4.78345 | TCAGCATTACTTGGT GGATAAAAAA ATAC TTTTGTATCC TTATTTTTATTTATT TERM 667 654374 - 654384 + g 79 -4 -5.74684 | opp_overlap 654374 AATAAACTAATAAAG GAAT ATA ATTC TTTTTCTTTTTGTTC TERM 668 654532 - 654542 + g 71 -2.6 -5.52023 | opp_overlap 654539, overlap 654539 GCTTTTCAATTATTT TTTA AAG TAAA TTTTTTATTAATAAT TERM 669 654710 - 654722 + g 73 -3.5 -5.37865 | TAATATTTTCATCTT TTTTT AAT AAAAA TTTTTTCGTTATTAA TERM 670 655025 - 655051 + g 90 -8.3 -4.66535 | overlap 655007 AAATATGATTGTTTT TATTATCTAAT TCATC ATTAGATAATA TTTGTTTTAAAGCTT UPA3_0565 657287 - 656388 - | cytosine-specific methyltransferase UPA3_0566 657850 - 658605 + | integrase-recombinase protein TERM 671 658657 - 658631 - T 100 -8.9 -5.8901 | opp_overlap 658631 ATATAAAATAAAAAA TCTACTTCAGT TTTGC ACTAAAGTAGA TAATATAATTCAATT UPA3_0567 660393 - 658735 - | phosphomannomutase TERM 672 660457 - 660441 - R 70 -8.1 -3.09313 | AACTATAGAGATATA TTTGGAT CTC ATCCAAA TGGTAATAATTGTTC cdd 660823 - 660428 - | cytidine deaminase TERM 673 660913 - 660940 + r 81 -8.6 -4.18018 | opp_overlap 660919, overlap 660919 TAAATGATAAGAGTA AAAAAACCATCA TTAT TGATGGTTTTTA TTTTAAATGGCAAGG TERM 674 660919 - 660934 + r 95 -7.6 -5.48213 | opp_overlap 660919, overlap 660913 ATAAGAGTAAAAAAA CCATCA TTAT TGATGG TTTTTATTTTAAATG TERM 675 660934 - 660919 - R 100 -7.6 -5.6473 | opp_overlap 660919 660913 ATAAGAGTAAAAAAA CCATCA TTAT TGATGG TTTTTATTTTAAATG UPA3_0570 662107 - 661034 - | creatinase/peptidase, M24 family protein TERM 676 661656 - 661672 + g 77 -5.1 -4.91459 | opp_overlap 661656 CAATTACATGTTAAA GCTGC AATATCA GCAGC TTTTTGTAAATATTC rpmG 662279 - 662118 - | ribosomal protein L33 thrS 664082 - 662340 - | threonyl-tRNA synthetase TERM 677 664434 - 664445 + G 71 -5.8 -4.41494 | TTCAAACAAGTTGTA CACC ATAT GGTG TTTTAATTGAAGCTA UPA3_0574 664235 - 665131 + | hypothetical protein truA 665853 - 665128 - | tRNA pseudouridine synthase A TERM 678 665164 - 665188 + g 90 -8.6 -4.6644 | opp_overlap 665163 665162 665156, overlap 665150 ATATAATCCACAAGC GGGTGCTAAT TTAAT ACTAGCACCC TTTTTGGGGTATATT TERM 679 665904 - 665886 - R 100 -6.8 -5.80003 | opp_overlap 665886, overlap 665891 CCAATAAATAAAAAA TAACCTGT TTA ACAAGTTA TTTCATCAAATTACT UPA3_0575 667231 - 665915 - | cobalt transport protein UPA3_0576 668533 - 667232 - | cobalt import ATP-binding protein CbiO 1 TERM 680 668356 - 668369 + g 74 -2.5 -5.78622 | opp_overlap 668356 668363 CAGAATTTCCAATAA TAAAA TAGA TTTTA TTTTTTTTAAAATCA UPA3_0577 669405 - 668521 - | cobalt import ATP-binding protein CbiO 2 TERM 681 669520 - 669491 - R 100 -13.1 -3.88464 | opp_overlap 669489 669487 669496, overlap 669496 TTAAAAATAGGTAAA TAAAAGGTGTTAG ATAA CTAACACCTTTCA CATGTTTTATTATAA TERM 682 669496 - 669515 + r 88 -10.8 -3.7229 | opp_overlap 669496 669491, overlap 669489 669487 AATAGGTAAATAAAA GGTGTTAG ATAA CTAACACC TTTCACATGTTTTAT TERM 683 669515 - 669496 - R 100 -10.8 -4.93288 | opp_overlap 669489 669487 669496, overlap 669491 AATAGGTAAATAAAA GGTGTTAG ATAA CTAACACC TTTCACATGTTTTAT rplA 670234 - 669545 - | ribosomal protein L1 rplK 670689 - 670237 - | ribosomal protein L11 TERM 684 673458 - 673445 - g 74 -2.5 -5.70522 | AAGAACAACAAAAAA TATAA ATAA TTATA AAGAAATTGGTAATT TERM 685 675251 - 675236 - g 86 -6.2 -5.12617 | TAATGATTTAAAAAA TTTGGA TTAT TCCAAA AATGGACGTTATTTA TERM 686 676551 - 676540 - g 72 -3 -5.34381 | AAATGCAAACAAAAA CAAA AAGA TTTG CTAATGAAATTAAAA UPA3_0580 670968 - 677759 + | efflux ABC transporter, permease protein TERM 687 677787 - 677757 - T 74 -9.1 -2.84636 | opp_overlap 677763, overlap 677748 677763 AACCAATTTAATAAT TAAAAAGACGGCC GTAAA GACCGTCTTTTTT TTAATGTTAATTGCT TERM 688 677781 - 677763 - T 90 -8.1 -4.99435 | opp_overlap 677763, overlap 677757 TTTAATAATTAAAAA GACGGCC GTAAA GACCGTC TTTTTTTTAATGTTA TERM 689 677763 - 677781 + T 100 -5.9 -5.94597 | opp_overlap 677763 677757 TTTAATAATTAAAAA GACGGCC GTAAA GACCGTC TTTTTTTTAATGTTA UPA3_0581 679241 - 677808 - | glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit TERM 690 678039 - 678055 + g 85 -5.3 -5.27923 | TAGAATTTGAGGATC TTTATTT GTC AAATAAA TTTTTTCTAAAATTA UPA3_0582 680677 - 679244 - | glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, A subunit TERM 691 679997 - 679983 - G 70 -6.4 -4.19276 | GTAAAATCTTTAAAA TCTCGC TTA GCAAGA GCATTAAAAACAATT TERM 692 680657 - 680669 + g 70 -3.5 -5.25735 | TTGATTATGAAGCGC TAAAA TAG TTTTA TTTTTCATTTTTTAA UPA3_0583 680951 - 680667 - | hypothetical protein UPA3_0584 682000 - 680972 - | aspartyl/glutamyl-tRNA amidotransferase subunit C ung 682665 - 682027 - | uracil-DNA glycosylase UPA3_0586 684410 - 682644 - | putative lipoprotein UPA3_0587 685873 - 684413 - | replicative DNA helicase rplI 686316 - 685879 - | ribosomal protein L9 rpsR 686639 - 686400 - | ribosomal protein S18 ssb 687148 - 686648 - | single-strand binding protein UPA3_0591 687675 - 687193 - | 30S ribosomal protein S6 UPA3_0592 687844 - 688353 + | acetyltransferase TERM 693 688387 - 688367 - T 72 -2.6 -5.86465 | opp_overlap 688367 AATAATATAAAAAAA TCATGG AATTATTAA CCATGA TTTTTGGTCACAACT TERM 694 689069 - 689053 - T 71 -6.7 -4.03413 | ATTTTTTGACACAAA TATTCTA GTT TAGAATA TCAAAATTATTTAGA TERM 695 689117 - 689086 - T 70 -7.6 -3.42124 | opp_overlap 689085 689081, overlap 689087 CAAAATTATTTAGAA GTTTAACTTTATTT TGAA AAATAAAGTTAAAA ATACTATAGTATTTA TERM 696 689116 - 689087 - T 84 -11.1 -2.64551 | opp_overlap 689085 689081, overlap 689086 AAAATTATTTAGAAG TTTAACTTTATTT TGAA AAATAAAGTTAAA AATACTATAGTATTT UPA3_0594 689687 - 689199 - | hypothetical protein UPA3_0595 693091 - 689696 - | solute-binding family 5 protein TERM 697 691437 - 691448 + g 75 -4.4 -5.17054 | TCTAGGATTGGAATG TCCT TATT AGGA TTTTTTAAATATTCT UPA3_0596 698761 - 693110 - | hypothetical protein TERM 698 694404 - 694381 - G 82 -10.4 -2.70994 | opp_overlap 694381 694380 694380, overlap 694380 TTAATGTTACATAAT CTGATGAAAC AACA GTTCCATCAG CATTTGGAATTTCAG TERM 699 694677 - 694696 + g 73 -9.2 -2.90633 | opp_overlap 694676 694675 TTATATGTATCAAGT GGCTCTCC ATAT GGTGAGCC TGGTCTTTCATATTT TERM 700 696427 - 696451 + g 80 -4.3 -5.55769 | opp_overlap 696426 696429, overlap 696429 696440 CCGCCTCAAATAATT CATCGTATTTT TGT AAAAAACGACG TTTTTTATTATAGAA UPA3_0597 700099 - 698780 - | oligopeptide transport system permease protein UPA3_0598 701640 - 700120 - | oligopeptide transport system permease protein UPA3_0599 702642 - 701644 - | oligopeptide transport system permease protein UPA3_0600 703780 - 702647 - | oligopeptide transport system permease protein UPA3_0601 703965 - 703795 - | hypothetical protein TERM 701 704294 - 704283 - R 70 -4.4 -4.98255 | overlap 704286 CTTTAATGACAAAAA CCAT CAGC ATGG CAATGATGAATACTA UPA3_0602 705463 - 704270 - | putative lipoprotein UPA3_0603 705705 - 705526 - | hypothetical protein TERM 702 705872 - 705858 - R 100 -6.4 -6.47325 | opp_overlap 705853 705858 AAAAAATAAAAAAAA TGGTCA CGA CGACCA TTTTATTTCTCATTA TERM 703 705858 - 705872 + r 77 -5.7 -5.04733 | opp_overlap 705858, overlap 705853 AAAAAATAAAAAAAA TGGTC ACGAC GACCA TTTTATTTCTCATTA UPA3_0604 707377 - 705893 - | hypothetical protein TERM 704 707322 - 707337 + g 72 -3.4 -5.3658 | GTTTTATTTGTTCAA TTAAAA ATCT TTTTAA TTTTGTTTTTATGAT TERM 705 707490 - 707466 - R 91 -5.1 -6.15717 | opp_overlap 707466 TAAACATAAAAAAAA CAACAACTATT TAT AGTAATTGTTG TTTTTATTCAAATAA TERM 706 707466 - 707490 + r 73 -5.1 -5.08601 | opp_overlap 707466 TAAACATAAAAAAAA CAACAACTATT TAT AGTAATTGTTG TTTTTATTCAAATAA rplS 707883 - 707512 - | ribosomal protein L19 trmD 708579 - 707893 - | tRNA (guanine-N1)-methyltransferase TERM 707 708162 - 708147 - G 70 -6.2 -4.01853 | TAACAGCATCAGAAA TTACCA TACT TGGTAA TTCCCCCCCTGTTAA TERM 708 708605 - 708621 + r 74 -3.7 -5.65927 | overlap 708607 AATTATTTAGCTTTA CTTAAAG CAG CTTTACG TTTTTTATTTGCATC rpsP 708888 - 708592 - | ribosomal protein S16 TERM 709 708725 - 708735 + g 74 -5.4 -4.79949 | opp_overlap 708725, overlap 708723 CCGTTTTGTAATTGA GCTA AAA TAGC TTCTTTTTTTAAAAC TERM 710 708947 - 708980 + r 73 -3.9 -5.50723 | opp_overlap 708947 TATAAATAAAAAAAA CCAAGCTGTCAAGTA TTTT TACTTAACGCTTTGG TTTTTATTTTAGTAA TERM 711 708979 - 708947 - R 91 -5 -6.28967 | gap 1, opp_overlap 708947 TATAAATAAAAAAAA CCAAGCTGTCAAGTA TTTT TACTTAAC-GCTTTG GTTTTTATTTTAGTA UPA3_0608 709817 - 708984 - | hypothetical protein TERM 712 709383 - 709394 + g 72 -3 -5.38839 | TTTATTAAAAATTGG GTTT AAAC AAAC TTTTCTTTTTGTGTG UPA3_0609 711638 - 709848 - | metallo-beta-lactamase superfamily protein TERM 713 711852 - 711825 - R 83 -6.5 -5.09521 | opp_overlap 711825, overlap 711819 TTAATAAATTAAAAA GTATTAAGAAT TATACT ACTCTTAATAC TTTGTACAATTAGTG UPA3_0610 715981 - 711878 - | viral phosphatase TERM 714 712191 - 712201 + g 78 -2.6 -5.87996 | GGAAAGATTTGGTAT TTAT TTG ATAA TTTTTTTGTTAGTTC TERM 715 712397 - 712413 + g 70 -2.3 -5.47218 | opp_overlap 712397 TTGATGACCATAAAG TGATTTT ATA ACAATCA TTTTTTTACGTGCAC TERM 716 713806 - 713817 + g 77 -5.8 -4.76478 | overlap 713796 TTACTTCTTGACTAT CACG ATTG CGTG TTTTAATTTCTTTTA TERM 717 714768 - 714790 + g 81 -7.2 -4.69214 | opp_overlap 714765 714768 714772 714773, overlap 714772 714778 714778 AAATCATTTAAATTA GAAATTTTTT CAA AAAAAGTTTC TTTGTTTGTTAAATC TERM 718 716115 - 716105 - H 70 -4 -5.1287 | opp_overlap 716105 716108 TCTACATTTAAAAAA TAAC TTT GTTA TAAAGTTGTATAATT TERM 719 717130 - 717114 - g 80 -4.4 -5.54907 | opp_overlap 717117 GTTATAAAACAAAAA CAAGCG GACGT CGCTTA ATGAGTTTTATTTTC TERM 720 717620 - 717598 - g 77 -5 -5.20606 | opp_overlap 717600, overlap 717600 AAATAGTAATAAAAA CATGATTTTT TCT AAAAATCATC AATTAAATTTAGCCA TERM 721 717618 - 717600 - g 77 -7.6 -4.20491 | opp_overlap 717600, overlap 717598 ATAGTAATAAAAACA TGATTTTT TCT AAAAATCA TCAATTAAATTTAGC UPA3_0611 716177 - 717913 + | hypothetical protein TERM 722 717994 - 718046 + G 78 -3.2 -5.64274 | gap 1, opp_overlap 718016 TGACAAATGATGAGC GTAAAGAATTT-ATTAGAAAAAATA AAAT TATTTATTTTAATCGAATTCGTTAC TTTTTTTATGAATGA UPA3_0612 717978 - 719264 + | potassium channel protein TERM 723 719302 - 719262 - T 100 -7.1 -5.84381 | opp_overlap 719265 719272, overlap 719265 TCATCAACAAAAAAA TAATTAAAAACCTGCAA GGTTAAA TTGCTGGTTTTTAATTT TATTTTCAATATTTA TERM 724 719265 - 719299 + T 93 -8.8 -5.11836 | opp_overlap 719265 719262, overlap 719272 TCAACAAAAAAATAA TTAAAAACCTGCAA GGTTAAA TTGCTGGTTTTTAA TTTTATTTTCAATAT TERM 725 719299 - 719265 - T 93 -8.8 -4.96435 | opp_overlap 719265 719272, overlap 719262 TCAACAAAAAAATAA TTAAAAACCTGCAA GGTTAAA TTGCTGGTTTTTAA TTTTATTTTCAATAT UPA3_0613 720219 - 719302 - | hypothetical protein UPA3_0614 721178 - 720225 - | hypothetical protein TERM 726 721224 - 721198 - R 82 -9.7 -3.72788 | opp_overlap 721197 721204 721206 721219, overlap 721204 721206 CCTTATAAGATATAA TAAAAATCCAT ATAAA ATGGATTTTTA AATGTTTAATAATTA TERM 727 721218 - 721204 - R 70 -4.3 -5.28561 | opp_overlap 721197 721204 721206, overlap 721198 721206 AAGATATAATAAAAA TCCAT ATAAA ATGGA TTTTTAAATGTTTAA rpsI 721649 - 721248 - | ribosomal protein S9 TERM 728 721313 - 721327 + g 81 -10 -3.14463 | opp_overlap 721315 TCTTACGTTCTTTAA CACGTG AAT CACGTG TTACTAAACCAGCTT rplM 722115 - 721669 - | ribosomal protein L13 TERM 729 722024 - 722004 - G 75 -7.7 -4.07568 | TCTTTCCTCTTAAAA TATCTGCTA CTT TAACAGATA AACGACCTAAAACTA TERM 730 723398 - 723381 - g 73 -8.5 -3.16088 | opp_overlap 723380, overlap 723380 ATACTTTATCAAAAG CTTTTGG AATG CCAAAAG ATGAATTAGAACATT UPA3_0617 722429 - 724009 + | putative lipoprotein TERM 731 724151 - 724135 - f 79 -5.3 -5.40873 | overlap 724142 AATATAAAAATAAAA TTTTAAA TTT TTTAAAA AAGAGGTCGTTAAAA TERM 732 724187 - 724142 - f 82 -9.3 -3.81111 | opp_overlap 724154, overlap 724135 724154 AAATAAAATTTTAAA TTTTTTAAAAAAGAGGTCG TTAAAATG CGTCCTCTTTTTTAAAAGA ATGATAAGGTTGTAT TERM 733 724489 - 724499 + G 83 -4 -5.9873 | GCTCGTTTTATTTCT GTTT TGC AAAC TTTTTTTTATAATGG UPA3_0618 724204 - 725817 + | amino acid transporter protein TERM 734 726356 - 726342 - g 73 -5.8 -4.62085 | opp_overlap 726341 ATTTTGAAAAAATAA GTTTTA AAT TAAAAC GTTGGCTCTATGGCA UPA3_0619 726014 - 726514 + | preprotein translocase SecE subunit TERM 735 727191 - 727177 - g 70 -7.2 -3.53012 | CTTTTTTTGGTGAAA TTGCAA AAA TTGCAA AAATTGATCAAAACA UPA3_0620 726540 - 727316 + | transcription termination/antitermination factor NusG TERM 736 727331 - 727356 + T 73 -4.1 -5.46657 | opp_overlap 727323 ATAAAAATAAAAAAA CACTTTACA TTTTTGTT TGTAAGGTG TTTTTTATTAAAATG TERM 737 727494 - 727520 + T 87 -11.2 -3.52919 | opp_overlap 727493 727490, overlap 727496 GTAAAAAAGAATATT GATTTTAAAAAT AAA ATTTTTAAAATC TTATAGTTAAATACT TERM 738 727731 - 727777 + T 75 -8.5 -3.56881 | gap 1, opp_overlap 727731 727733, overlap 727729 727736 TTATCATAAACAAAA GTCGATGCATATAAGTTTTA CGAGCCTT TAAAACTTATATGCATT-AC TATTATATTATTTTT TERM 739 727777 - 727731 - T 81 -6.3 -5.02323 | gap 1, opp_overlap 727731 727729 727736, overlap 727733 TTATCATAAACAAAA GTCGATGCATATAAGTTTTA CGAGCCTT TAAAACTTATATGCATT-AC TATTATATTATTTTT TERM 740 727736 - 727773 + T 89 -11.7 -3.47232 | opp_overlap 727733 727731, overlap 727731 727729 ATAAACAAAAGTCGA TGCATATAAGTTTTA CGAGCCTT TAAAACTTATATGCA TTACTATTATATTAT UPA3_0621 729134 - 727803 - | ATP-dependent RNA helicase TERM 741 728167 - 728181 + g 75 -7.2 -4.18018 | CTACGTCCTGCACGG TGAATG TAT CATTCA TTTTCAGTAGGCAAA TERM 742 728540 - 728552 + g 79 -3.5 -5.64006 | overlap 728545 TATTAATAATCTTTG TATTT TTA AAATA TTTTTTTAATTGGAT UPA3_0622 730739 - 729135 - | MATE transporter family DNA damage inducible protein TERM 743 730675 - 730700 + g 93 -7.7 -5.23292 | opp_overlap 730680 ATGAAAATTTTATCA CCAAATTGATT TATA AACCAATTTGG TTTTATTTTCTGTGA UPA3_0623 732775 - 731213 - | MATE transporter family DNA damage inducible protein TERM 744 732891 - 732913 + r 76 -3.4 -5.77571 | opp_overlap 732882 732894, overlap 732894 ATTAAGTAAACAAAA AAAGGTTTAG ATG CAAAACCTTC TTTTTGTTTTTTAGT TERM 745 732894 - 732910 + r 70 -5.1 -4.8855 | opp_overlap 732882 732894, overlap 732891 AAGTAAACAAAAAAA GGTTTAG ATG CAAAACC TTCTTTTTGTTTTTT TERM 746 732910 - 732894 - R 86 -5.1 -6.01187 | opp_overlap 732894 732891, overlap 732882 AAGTAAACAAAAAAA GGTTTAG ATG CAAAACC TTCTTTTTGTTTTTT deoC 733571 - 732924 - | deoxyribose-phosphate aldolase TERM 747 733464 - 733476 + g 71 -4.9 -4.85396 | opp_overlap 733464, overlap 733465 AGGATTAATACAAAC TGAAT AAA ATTCA TTTTCTTCTGCTTCT tkt 735544 - 733583 - | transketolase TERM 748 735532 - 735514 - G 70 -7.4 -3.51708 | opp_overlap 735525 735526 TAGCCTGTAAAGCAA GTGAACGC ATT GCGTTAAC ATAACGATTCATATT UPA3_0626 735837 - 735574 - | phosphohistidinoprotein-hexose phosphotransferase UPA3_0627 737535 - 735937 - | cardiolipin synthase TERM 749 736646 - 736629 - G 74 -7.1 -4.27796 | opp_overlap 736621 736632, overlap 736621 GAATAAATTCTAAAA GAATTGT ATGC ACAATTC CTCCGGTTAAAATAT TERM 750 737606 - 737579 - R 80 -8.6 -4.10179 | opp_overlap 737579 737586, overlap 737569 737586 TATAATTTATATAAA TAAAAAATAGGG TTTC CCCTATTTTTAA TTATTAATGGCGGAA TERM 751 737579 - 737606 + r 77 -8.6 -3.71848 | opp_overlap 737569 737579 737586, overlap 737586 TATAATTTATATAAA TAAAAAATAGGG TTTC CCCTATTTTTAA TTATTAATGGCGGAA TERM 752 737599 - 737586 - R 100 -6.7 -5.76237 | opp_overlap 737579 737586, overlap 737579 TATATAAATAAAAAA TAGGG TTTC CCCTA TTTTTAATTATTAAT TERM 753 737586 - 737599 + r 83 -6.7 -5.00339 | opp_overlap 737586 737579, overlap 737579 TATATAAATAAAAAA TAGGG TTTC CCCTA TTTTTAATTATTAAT UPA3_0629 738112 - 737792 - | thioredoxin topA 740186 - 738141 - | DNA topoisomerase I UPA3_0631 740959 - 740249 - | hypothetical protein UPA3_0632 741831 - 741010 - | GTPase TERM 754 741488 - 741501 + g 74 -5.3 -4.76191 | opp_overlap 741476 741488, overlap 741476 ATACCTACAAATTTA GGATT TATT AATCC TTTCTTTTGGTATAT UPA3_0633 742283 - 741843 - | hypothetical protein tdk 742991 - 742320 - | thymidine kinase ychF 744104 - 742998 - | GTP-binding protein YchF TERM 755 744084 - 744054 - G 82 -8.4 -4.01158 | overlap 744080 AATTGTATTAAATAA TGTGGATTTACCAA CGT TTGGCAAACCAACA AGACCTGCTGATAAC fba 744987 - 744115 - | fructose-1,6-bisphosphate aldolase, class II rpoE 745474 - 744992 - | DNA-directed RNA polymerase, delta subunit UPA3_0638 746739 - 745522 - | HD domain-containing protein TERM 756 745626 - 745636 + g 71 -2.6 -5.58522 | CAAGTTTTAATAATT TAAT ATC ATTA TTTTTGTTTTCTGTA TERM 757 745705 - 745727 + g 77 -9.4 -2.97995 | opp_overlap 745704 745703 ATTTGAAGTAATAGT TTCATAAAAA TAT TTTTTATGAA TAATCTTTTGATCTT TERM 758 745798 - 745775 - G 89 -9.8 -4.24204 | opp_overlap 745773 TATTCATATTCAAAA GTTACAAAAT CTTT ATTTTGTAAC CAATTTGTTGCTAAA gltX 748196 - 746748 - | glutamyl-tRNA synthetase UPA3_0640 748983 - 748186 - | GHMP kinase ATP-binding subunit ksgA 749850 - 749017 - | dimethyladenosine transferase UPA3_0642 751003 - 749852 - | membrane protein OxaA TERM 759 750469 - 750483 + g 72 -7.2 -3.71527 | opp_overlap 750445, overlap 750445 750463 TTTTTCCTTGAATTT CAGAAA TTC TTTCTG TTTGGATAGTTGCAC rnpA 751383 - 751042 - | ribonuclease P protein component rpmH 751535 - 751389 - | ribosomal protein L34