TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.509027 %AT, 3977274 nt, 32301 terms. Intergenic: 0.584352 %AT, H2T: 628990 nt, 4795 terms; T2T: 172505 nt, 3331 terms; H2H: 278763 nt, 3862 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|108793532|ref|NC_008120.1| Yersinia pestis Antiqua plasmid pMT, complete sequence (length 96471) YPA_MT0001 89 - 1111 + | transposase TERM 1 1192 - 1178 - g 77 -11.4 -3.3506 | overlap 1169 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_MT0002 1111 - 1890 + | transposase/IS protein YPA_MT0003 2632 - 2024 - | hypothetical protein TERM 2 2380 - 2391 + g 71 -7.2 -4.11404 | opp_overlap 2378 2380, overlap 2371 GTTCAGCGATGAACA CCGG TTCA CCGG TTTCTGTGCTGTAAA YPA_MT0004 5822 - 2934 - | phage tail protein TERM 3 4984 - 5018 + g 83 -12.8 -3.6106 | overlap 4986 5015 GCTTCATTTTCACTA TTGGCTGCCGCTGCTT CTG AAGCAGCAGCAGCCTC TTTAGAGGTCTTGGC TERM 4 4986 - 5016 + g 100 -19.8 -3.38201 | overlap 4984 5015 TTCATTTTCACTATT GGCTGCCGCTGCTT CTG AAGCAGCAGCAGCC TCTTTAGAGGTCTTG TERM 5 5109 - 5139 + g 70 -8.2 -3.68726 | CGCAGCAGCCTTGCT TTCAGCCGCATTGG TCT CTGACGCGGCAGAA TTATCTTCAGATGTT TERM 6 5225 - 5248 + g 71 -5.2 -4.46926 | overlap 5227 CCGATGCTTTTGATG CAGCGGCA CTTAGCTC TGCCGCAG TTTTATACTCAGATG TERM 7 5858 - 5839 - R 76 -9.2 -3.53012 | TTCGCTCCTTGTAAA GGCGGGCA TCCC TGCTCGCC ATAGGTAATCACTTA TERM 8 5923 - 5898 - R 71 -4.7 -4.63044 | gap 1 ACCGATATAAAGAAA GATGTCTACCGC CGA GCAG-AGCCATC CCCCCACCCGACCTG YPA_MT0005 6520 - 5903 - | hypothetical protein YPA_MT0006 11169 - 6538 - | phage tail protein YPA_MT0007 11778 - 11191 - | phage tail protein YPA_MT0008 12524 - 11766 - | phage tail protein YPA_MT0009 13254 - 12556 - | phage tail protein TERM 9 13301 - 13275 - R 95 -9.4 -4.41348 | overlap 13277 CTTCCTTGAAATAAA GAGGCGCCAACA TCC TGTCAGCGCCTA TAGATAATAGTAAAT TERM 10 13299 - 13277 - R 100 -12 -3.81557 | overlap 13275 TCCTTGAAATAAAGA GGCGCCAACA TCC TGTCAGCGCC TATAGATAATAGTAA YPA_MT0010 13679 - 13344 - | phage tail protein YPA_MT0011 15244 - 13721 - | membrane protein TERM 11 15120 - 15145 + g 82 -10.5 -3.94409 | gap 1, overlap 15119 TCGTCGCTCGCGTTC GCCAGGTCAGCG AGG CG-TGACTTGGC TTTGTCGATCATCTC YPA_MT0012 18298 - 15254 - | membrane protein TERM 12 16765 - 16775 + g 76 -6.8 -4.56597 | opp_overlap 16765 TGCCCAGGCTGATAA CCAG CTC CTGG TTTTTAGCCAGCCAC TERM 13 18082 - 18094 + g 78 -6.3 -4.85599 | GCTCGAAGCCGGCAG CTACA TCC TGTAG TTTTTCTGCCGTGAC YPA_MT0013 18539 - 18306 - | hypothetical protein YPA_MT0014 18973 - 18656 - | hypothetical protein TERM 14 19016 - 18994 - R 76 -7.7 -4.0896 | opp_overlap 18994 18996, overlap 18983 18996 AAAGTCCTTTTAAAA GAGAGGCTC TTCCT GAGCCTCTG CTTAATTACGTCGCG TERM 15 19014 - 18996 - R 82 -10.3 -3.63922 | opp_overlap 18996 18994, overlap 18994 AGTCCTTTTAAAAGA GAGGCTC TTCCT GAGCCTC TGCTTAATTACGTCG TERM 16 18996 - 19014 + r 75 -10.3 -2.8507 | opp_overlap 18994 18996, overlap 18994 AGTCCTTTTAAAAGA GAGGCTC TTCCT GAGCCTC TGCTTAATTACGTCG YPA_MT0015 19779 - 19033 - | hypothetical protein TERM 17 19241 - 19280 + g 84 -10.8 -4.10453 | gap 1, opp_overlap 19278, overlap 19230 19276 AGTTGCACGGTCTCA CCGGCTTTAACT-TCCGGA GAT TCCGGAGAGATAGAGACGG TTTTAACCGGCTTTG YPA_MT0016 20237 - 19854 - | hypothetical protein YPA_MT0017 20712 - 20239 - | hypothetical protein YPA_MT0018 21047 - 20703 - | hypothetical protein YPA_MT0019 21978 - 21145 - | hypothetical protein YPA_MT0020 22412 - 21978 - | hypothetical protein TERM 18 22426 - 22451 + r 95 -12.7 -3.33696 | gap 1, opp_overlap 22429, overlap 22427 22429 ATTCTTCTTCTCACT TA-ATGGGCGGC TAT GCCGCCCATGTA TTGGTTACGCAGCCG TERM 19 22427 - 22449 + r 100 -13.4 -3.23853 | opp_overlap 22429, overlap 22426 22429 TTCTTCTTCTCACTT AATGGGCGGC TAT GCCGCCCATG TATTGGTTACGCAGC TERM 20 22429 - 22447 + r 100 -16 -3.18366 | opp_overlap 22429, overlap 22427 22426 CTTCTTCTCACTTAA TGGGCGGC TAT GCCGCCCA TGTATTGGTTACGCA TERM 21 22447 - 22429 - R 100 -16 -3.05384 | opp_overlap 22429 22427 22426 CTTCTTCTCACTTAA TGGGCGGC TAT GCCGCCCA TGTATTGGTTACGCA YPA_MT0021 23118 - 22456 - | hypothetical protein TERM 22 23157 - 23137 - R 100 -14 -4.82901 | opp_overlap 23137 TCGCTCCTACAAAAA GGGTGGGC GTATA GCCCACCC TTAAATGGTAGATAA TERM 23 23137 - 23157 + r 100 -14 -3.10164 | opp_overlap 23137 TCGCTCCTACAAAAA GGGTGGGC GTATA GCCCACCC TTAAATGGTAGATAA YPA_MT0022 24068 - 23193 - | hypothetical protein YPA_MT0023 24928 - 24095 - | hypothetical protein YPA_MT0024 26525 - 24951 - | hypothetical protein YPA_MT0025 27815 - 26559 - | hypothetical protein TERM 24 27525 - 27552 + g 74 -2.6 -5.06414 | overlap 27528 GATTTCAGAGCCGTT CTTCAGCACGAT GGTC ATCGTGGTGTCG TTTTTCTTACGAACC TERM 25 27612 - 27654 + g 80 -9.8 -4.04188 | ATCCCACAAGATCTG GCGAGCCATCTGGTACGTCG GTG CGACGTACCAGACACGTTGC TTCTTCTCTTTGGCT YPA_MT0026 28459 - 27818 - | hypothetical protein TERM 26 28426 - 28444 + g 72 -3.8 -4.86001 | ACTCAGCTGGCGTCA GGCGAG TTTTGCT CTCGTC TTTTTCTACAGTCAT TERM 27 28629 - 28575 - R 89 -11.9 -3.37796 | gap 2, opp_overlap 28593 28596 GGGGAGTATTCAGAA CCTGCTTCCGTATATAT--TTAATAAG TCA CTTAGTATTTATATATACGGAAGCAGG CTCTCAAACTGGCTC YPA_MT0027 28921 - 28655 - | hypothetical protein YPA_MT0028 29821 - 28931 - | hypothetical protein YPA_MT0029 30081 - 29827 - | hypothetical protein TERM 28 29957 - 29969 + g 83 -9.1 -4.34267 | opp_overlap 29930 29931 29956 29957 TTGATCATCAGCAAC GCCAG ACT CTGGC TTTTACCTTCTCTGG YPA_MT0030 30712 - 30074 - | ABC transporter ATP-binding protein TERM 29 30392 - 30411 + g 80 -10 -4.08945 | gap 1, opp_overlap 30388 30391 30386, overlap 30394 GGCCATAGACAGCAG CC-CCAGCG CAT CGCTGGTGG TTTTGCCCAACTGGT TERM 30 30394 - 30408 + g 74 -11.4 -3.08211 | opp_overlap 30388 30391 30386, overlap 30392 CCATAGACAGCAGCC CCAGCG CAT CGCTGG TGGTTTTGCCCAACT YPA_MT0031 31377 - 30709 - | hypothetical protein TERM 31 31267 - 31305 + g 74 -2.5 -5.10029 | overlap 31269 31275 31279 AAAACCGCGCTTTTT GATGGCGG-CAGCCAGGTC GCG GATCTG-CTGTTCGTCATG TTTTTTGGCGTTCAT YPA_MT0032 32075 - 31377 - | hypothetical protein TERM 32 32388 - 32374 - g 74 -4.2 -4.8622 | opp_overlap 32378 GTGCGCAAGGAAAAA GCCC CCGCGCT GGGC AAGCCGAACCCGGTA YPA_MT0033 32140 - 33699 + | hypothetical protein YPA_MT0034 33702 - 33980 + | hypothetical protein TERM 33 33989 - 34004 + F 86 -10.4 -3.8186 | opp_overlap 33988 33989 CGATTAAGCATTAAG GGCGTC GCAA GACGCC TTGTTCGTTGAAGTG TERM 34 34004 - 33989 - f 74 -10.4 -2.57136 | opp_overlap 33989, overlap 33988 CGATTAAGCATTAAG GGCGTC GCAA GACGCC TTGTTCGTTGAAGTG YPA_MT0035 34040 - 34462 + | lipoprotein YPA_MT0036 34467 - 34994 + | transcriptional regulator TERM 35 35006 - 35031 + F 100 -10.6 -4.62471 | opp_overlap 35012 TTAAATCTATAAGGG TAATAACCGG CTAAGT CCGGTTATTA TTTTATGTGTCACTT YPA_MT0037 35317 - 35967 + | hypothetical protein TERM 36 36005 - 35972 - T 100 -16.3 -3.3907 | gap 1, opp_overlap 35981 TCAAAGCGTAATTAA TTGAATATAGCGCCCA CTA TGGGCGCT-TATTCAA AAGATCTTAAGTCTG TERM 37 35981 - 35997 + T 100 -13.7 -3.62224 | opp_overlap 35972 AATTAATTGAATATA GCGCCCA CTA TGGGCGC TTATTCAAAAGATCT TERM 38 36315 - 36283 - T 100 -11.3 -5.69262 | opp_overlap 36290, overlap 36289 36290 TTAGAAAAATAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 39 36309 - 36289 - T 100 -12.5 -4.15156 | opp_overlap 36290, overlap 36283 36290 AAATAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 40 36308 - 36290 - T 100 -16 -3.05433 | opp_overlap 36290, overlap 36289 36283 AATAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 41 36290 - 36308 + T 100 -16 -4.8048 | opp_overlap 36290 36289 36283 AATAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_MT0038 36847 - 36389 - | transposase TERM 42 36978 - 36960 - R 100 -16 -3.07307 | opp_overlap 36960 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 43 36960 - 36978 + r 100 -16 -4.36914 | opp_overlap 36960 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 44 36997 - 37016 + r 93 -12.2 -3.71998 | opp_overlap 36997 TCTGGGCACAAAAAA GGCCACTA AATA TAGTGGCC TTATGTTAATAGATA TERM 45 37016 - 36997 - R 100 -12.2 -5.24129 | opp_overlap 36997 TCTGGGCACAAAAAA GGCCACTA AATA TAGTGGCC TTATGTTAATAGATA YPA_MT0039 37625 - 37056 - | hypothetical protein YPA_MT0091 38384 - 37638 - | hypothetical protein TERM 46 38252 - 38262 + g 70 -3.2 -4.77757 | ATACCGAGAACTGGT CGTC ATT GATG TTTTCGTTTTTCCAC YPA_MT0040 40290 - 38374 - | exonuclease subunit 2 YPA_MT0041 41605 - 40520 - | exonuclease subunit 1 TERM 47 42138 - 42158 + H 70 -7.5 -3.75153 | AACGTCATTACTTTT CAGGGGGGT GGA ACCTGCCTG TTTGGGTTGCCCAGG YPA_MT0042 42212 - 43042 + | periplasmic protein TERM 48 43051 - 43079 + T 82 -10.3 -3.65902 | opp_overlap 43053, overlap 43053 CAAATAGTCTCATTA CAGGCGGTTGTCT ACT GGACAATCGCCTA TTTACCTGGAGTGCA TERM 49 43053 - 43077 + T 100 -12.9 -3.41073 | opp_overlap 43053, overlap 43051 AATAGTCTCATTACA GGCGGTTGTCT ACT GGACAATCGCC TATTTACCTGGAGTG TERM 50 43077 - 43053 - T 72 -10 -2.79679 | opp_overlap 43053 43051 AATAGTCTCATTACA GGCGGTTGTC TACTG GACAATCGCC TATTTACCTGGAGTG YPA_MT0043 44046 - 43402 - | hypothetical protein TERM 51 44329 - 44308 - H 74 -6.5 -4.44797 | opp_overlap 44323 CTATGAAGAGCAAAA CAACCTCTC TGGA GAGTGGTCG GTATCCACTGTAGTG TERM 52 44706 - 44694 - H 70 -2.6 -4.96762 | opp_overlap 44703, overlap 44702 TAGAGAGTAGAAAAA CCAC TATAG GCGG TAGGATAACCGCTGT YPA_MT0044 44791 - 45855 + | replication protein A TERM 53 45880 - 45904 + T 100 -8.6 -5.05113 | opp_overlap 45880 TGTAGAGAGTAGAAA GGCTCACTAT CCGCT GTAGTGGGCC TTTTGTTTATCTGAA TERM 54 46045 - 46057 + T 70 -7.7 -3.68073 | GCTGCGAGGTTAGTG GTCAC TGG GTGAC TTGTTAAATCCACTC TERM 55 46332 - 46349 + T 74 -6.9 -4.2828 | CACTACAGTGGATAC CGGATGC CACG GCAGCCG TTTTACTCACTACAG YPA_MT0045 46636 - 46424 - | hypothetical protein YPA_MT0046 46971 - 46636 - | hypothetical protein YPA_MT0092 47147 - 46968 - | hypothetical protein YPA_MT0047 47463 - 47188 - | hypothetical protein YPA_MT0048 47935 - 47531 - | hypothetical protein TERM 56 47983 - 48001 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_MT0049 48005 - 49027 + | transposase TERM 57 49106 - 49092 - f 86 -11.4 -3.3506 | overlap 49083 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_MT0050 49138 - 49800 + | transposase/IS protein YPA_MT0093 49816 - 50136 + | hypothetical protein TERM 58 50277 - 50289 + T 75 -5.5 -4.8622 | TCTTTCAGAAATTGC GTGGC GTT GTCAC TTTTTACTTCAACGG TERM 59 50366 - 50385 + T 74 -9.2 -3.24232 | opp_overlap 50367, overlap 50364 50362 50367 ATACGGAAATAAAAA AGGCGTCC AAGT GGACGCCG TATCTTTGAAAAGGG TERM 60 50384 - 50367 - T 100 -12.7 -5.65927 | opp_overlap 50367 50366 50364 50362 TACGGAAATAAAAAA GGCGTCC AAGT GGACGCC GTATCTTTGAAAAGG TERM 61 50367 - 50384 + T 86 -12.7 -2.54325 | opp_overlap 50367, overlap 50366 50364 50362 TACGGAAATAAAAAA GGCGTCC AAGT GGACGCC GTATCTTTGAAAAGG YPA_MT0051 51233 - 50403 - | lipoprotein YPA_MT0094 51437 - 51237 - | hypothetical protein TERM 62 51505 - 51521 + r 100 -15.1 -3.52539 | opp_overlap 51505, overlap 51494 TTTCAAGTATAAAAA GGCGCCC AAT GGGCGCC TTGTGATTACGCTTC TERM 63 51521 - 51505 - R 100 -15.1 -4.98255 | opp_overlap 51505 51494 TTTCAAGTATAAAAA GGCGCCC AAT GGGCGCC TTGTGATTACGCTTC YPA_MT0052 52604 - 51528 - | recombinase TERM 64 52543 - 52558 + g 80 -3.2 -5.26119 | GAGACCTTCTGAATC TCGTCA TTGC TGCCGA TTTTCTTTTTCAGCG YPA_MT0053 52873 - 52607 - | hypothetical protein YPA_MT0054 53817 - 52873 - | exonuclease TERM 65 53861 - 53838 - R 100 -15.4 -4.57073 | opp_overlap 53842 CACTCCTTCCAAAAA GTAAGGCGTC CGTA GACGCCTTAC TGGTCACGTTATGGG TERM 66 53842 - 53857 + r 77 -10.4 -3.22223 | opp_overlap 53838 CCTTCCAAAAAGTAA GGCGTC CGTA GACGCC TTACTGGTCACGTTA YPA_MT0055 54906 - 53878 - | hypothetical protein YPA_MT0056 55499 - 55026 - | hypothetical protein TERM 67 55937 - 55954 + H 83 -9.1 -4.1552 | overlap 55953 AAAAATAGTAGTTAG TGGCGGT TTTG GCCGCCA TTTGTTCCAAAGGTA YPA_MT0057 56002 - 56565 + | hypothetical protein TERM 68 56564 - 56593 + T 100 -15.1 -3.91473 | opp_overlap 56571, overlap 56571 ACGCCGAATGCGCAT GAAAAAACCCGCC GATT GGCGGGTTTTTGC TTTATGCGACTTTCT TERM 69 56571 - 56586 + T 100 -11.8 -5.04601 | opp_overlap 56571, overlap 56564 ATGCGCATGAAAAAA CCCGCC GATT GGCGGG TTTTTGCTTTATGCG TERM 70 56586 - 56571 - T 100 -11.8 -5.14965 | opp_overlap 56571 56564 ATGCGCATGAAAAAA CCCGCC GATT GGCGGG TTTTTGCTTTATGCG YPA_MT0058 57038 - 56595 - | hypothetical protein YPA_MT0059 60559 - 57035 - | DNA polymerase III TERM 71 60482 - 60497 + g 70 -4.6 -4.67635 | GTAGCCAGCGTCTCT CGCGAT TTTC ACCGCG TTTTCTGCTTTTAGA TERM 72 60514 - 60537 + g 73 -10.4 -3.31144 | gap 1, opp_overlap 60533, overlap 60536 TTTCTGCTTTTAGAG CTGAC-TCTCC CAG GGAGAAGTCAG TTCTGACCATCAGAG YPA_MT0060 61975 - 60740 - | porphyrin biosynthetic protein YPA_MT0061 63958 - 62072 - | porphyrin biosynthetic protein YPA_MT0062 64776 - 63997 - | transposase/IS protein TERM 73 64695 - 64709 + g 77 -11.4 -3.3506 | overlap 64708 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_MT0063 65798 - 64776 - | transposase TERM 74 65820 - 65802 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_MT0064 66397 - 65825 - | porphyrin biosynthetic protein TERM 75 66099 - 66067 - G 80 -4.8 -5.06414 | gap 1, opp_overlap 66088, overlap 66088 66089 TGCGTTCAATAAAAA CGTCTTCCAGCGCGT TCCA AAGC-CCGGTAGACG GAGCCTTTCCTCTCT TERM 76 66450 - 66484 + r 80 -10.1 -3.6682 | overlap 66451 TGTGTGTAATTTTAT GCTGTACGAACAGGT GGCCA AGCTGTTCGTACAGG TTTCAATAGGTAGGA TERM 77 66451 - 66483 + r 93 -13.6 -2.79878 | overlap 66450 GTGTGTAATTTTATG CTGTACGAACAGGT GGCCA AGCTGTTCGTACAG GTTTCAATAGGTAGG YPA_MT0065 66719 - 66507 - | hypothetical protein YPA_MT0067 66987 - 67373 + | hypothetical protein YPA_MT0066 67712 - 67368 - | integrase YPA_MT0068 68472 - 67735 - | integrase TERM 78 68601 - 68573 - R 89 -11.9 -3.28712 | opp_overlap 68573 GCCTGTTTTGTACAA TGATTCCATACTT AAT AGGTATGGAATCA TTTTTACCGGCTATG TERM 79 68573 - 68601 + r 100 -14.1 -4.59109 | opp_overlap 68573 GCCTGTTTTGTACAA TGATTCCATACTT AAT AGGTATGGAATCA TTTTTACCGGCTATG TERM 80 68675 - 68663 - R 93 -2.6 -5.99154 | TACCAAATAAAAAAA CCCC GGGGT GAGG GCAAAGGCTGCTTTG TERM 81 69215 - 69186 - R 84 -10.8 -3.58879 | opp_overlap 69187 69191, overlap 69187 69191 GATAATTCATAAATA TTAAAGGAGGGC ATAATA GCCCTCCTTTAT CTATTATCTATATGG TERM 82 69214 - 69187 - R 95 -14.3 -2.74604 | opp_overlap 69187 69191, overlap 69186 69191 ATAATTCATAAATAT TAAAGGAGGGC ATAATA GCCCTCCTTTA TCTATTATCTATATG TERM 83 69187 - 69214 + r 100 -14.3 -3.26387 | opp_overlap 69187 69186 69191, overlap 69191 ATAATTCATAAATAT TAAAGGAGGGC ATAATA GCCCTCCTTTA TCTATTATCTATATG TERM 84 69210 - 69191 - R 90 -10.7 -4.04579 | opp_overlap 69187 69191, overlap 69187 69186 TTCATAAATATTAAA GGAGGGC ATAATA GCCCTCC TTTATCTATTATCTA TERM 85 69191 - 69210 + r 100 -10.7 -4.26393 | opp_overlap 69191 69187 69186, overlap 69187 TTCATAAATATTAAA GGAGGGC ATAATA GCCCTCC TTTATCTATTATCTA YPA_MT0095 69744 - 69232 - | F1 capsule antigen TERM 86 69344 - 69323 - G 79 -6.6 -4.69214 | overlap 69343 GAGCGAACAAAGAAA TCCTGGCT GCCCGT AGCCAAGA CGACGTCATCCCCCA YPA_MT0069 72326 - 69825 - | F1 capsule anchoring protein TERM 87 71036 - 71060 + g 100 -5 -6.32017 | gap 1, opp_overlap 71039 AGTACTTATTATATC GAACGC-GCCA ACGT TGGCCGCTTTC TTTTTTTTGTTTATT TERM 88 71995 - 72005 + g 73 -5.4 -4.67982 | overlap 72001 AAATCAACACATTGC TCTG TAC CAGA TTTTATTAAATCAGG YPA_MT0070 73127 - 72351 - | F1 chaperone protein TERM 89 72880 - 72893 + g 83 -3.1 -5.50774 | GGAGTGACCACGAAA GGATC CTCT GATTC TTTTTCTTTATTCTC YPA_MT0096 73437 - 74360 + | F1 operon positive regulatory protein TERM 90 75891 - 75912 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_MT0071 74709 - 75917 + | transposase YPA_MT0072 76386 - 77408 + | transposase YPA_MT0073 77924 - 77607 - | hypothetical protein YPA_MT0097 77977 - 78177 + | transposase TERM 91 78921 - 78906 - g 70 -8.2 -3.74251 | CACACTTGCATCAAA GGGGGC GCAT ACCCCC GGCGTTGATGGTGTG YPA_MT0074 78784 - 79239 + | hypothetical protein TERM 92 79413 - 79436 + T 79 -8.2 -4.19123 | opp_overlap 79405 79407 79413, overlap 79407 AAACAGAGATGATAA CCATCATGAT TATT AGCATGATGG TTTATGTGATTTATG TERM 93 79436 - 79413 - T 71 -8.2 -3.52909 | opp_overlap 79407 79413, overlap 79405 79407 AAACAGAGATGATAA CCATCATGAT TATT AGCATGATGG TTTATGTGATTTATG YPA_MT0075 81247 - 79484 - | toxin YPA_MT0076 81813 - 81325 - | hypothetical protein YPA_MT0077 82553 - 82828 + | hypothetical protein TERM 94 82822 - 82841 + T 93 -12.2 -3.72241 | opp_overlap 82817 82822 ACATGAGAAAGAGAA CGACTAGC GAGC GCTAGTCG TTTAAATGATTAGTG TERM 95 82841 - 82822 - T 100 -12.2 -3.92485 | opp_overlap 82822, overlap 82817 ACATGAGAAAGAGAA CGACTAGC GAGC GCTAGTCG TTTAAATGATTAGTG YPA_MT0078 83792 - 82851 - | hypothetical protein YPA_MT0079 84478 - 83858 - | resolvase YPA_MT0080 85231 - 85004 - | hypothetical protein YPA_MT0081 85533 - 86738 + | partitioning protein A TERM 96 87266 - 87247 - g 70 -2.8 -4.86731 | TGCGTTGAAAGAAAA TCTCTCTC CGGC GAAAGTGA CACGTGCGTTTCAGG TERM 97 87698 - 87671 - g 73 -5.6 -4.73635 | overlap 87672 87675 GATAAGGCAATAAAA CGTATTCTGGAA AGAC TTCCAGAATCAG GTGAGTAAGGGATAA YPA_MT0082 86735 - 87706 + | partitioning protein B TERM 98 87714 - 87731 + T 91 -7 -5.53079 | opp_overlap 87714 GTGAGTAAGGGATAA GGATGC CGAAGA GCATCC TTTTTTGTATGTTTT YPA_MT0098 87989 - 87843 - | hypothetical protein YPA_MT0083 88091 - 89482 + | DNA-binding protein YPA_MT0099 89952 - 89644 - | hypothetical protein YPA_MT0084 90345 - 91022 + | putative methylase TERM 99 91066 - 91046 - g 72 -4 -4.82667 | gap 1, overlap 91039 91047 91059 GCAGGACACGAAAAA CTCCGCGCA GAAG TG-GCGGAA GTAGCCAACAGCATG YPA_MT0085 91022 - 91243 + | hypothetical protein YPA_MT0086 91254 - 91673 + | hypothetical protein TERM 100 91710 - 91671 - f 73 -2.9 -5.1101 | gap 2, opp_overlap 91682, overlap 91676 91680 GCATTACTGAAAAAA TGAAATCA--ACACGCCGC CCGG GCGGCGTGTACTGACCCCG TTCAGAGGAACCCAT TERM 101 91705 - 91676 - f 82 -8 -4.43669 | gap 2, opp_overlap 91682, overlap 91671 91680 ACTGAAAAAATGAAA TCA--ACACGCCGC CCGG GCGGCGTGTACTGA CCCCGTTCAGAGGAA TERM 102 91699 - 91680 - f 100 -15 -3.7256 | opp_overlap 91682, overlap 91676 91671 AAAAAATGAAATCAA CACGCCGC CCGG GCGGCGTG TACTGACCCCGTTCA TERM 103 91682 - 91697 + F 83 -11.8 -2.78715 | opp_overlap 91680 91676 91671 AAAATGAAATCAACA CGCCGC CCGG GCGGCG TGTACTGACCCCGTT YPA_MT0087 91727 - 92506 + | hypothetical protein TERM 104 92534 - 92513 - f 84 -11.5 -3.09327 | overlap 92516 CCAGTGTAGCGAACA GCAGGGGGC GGCG GCCCCCTGA ATCTACCACGAAGGA TERM 105 92531 - 92516 - f 83 -11.8 -2.75992 | overlap 92513 GTGTAGCGAACAGCA GGGGGC GGCG GCCCCC TGAATCTACCACGAA YPA_MT0088 92905 - 93411 + | antirestriction protein TERM 106 93482 - 93458 - f 100 -11.3 -4.07687 | overlap 93459 AGCCCGCGCGCAAAA CCCTGGCAGGC TCT GCCTGCCGGCG AAGTACGCCGCGCCT TERM 107 93480 - 93459 - f 93 -12.3 -3.04398 | gap 1, overlap 93458 GCCCGCGCGCAAAAC CCTGGCAGGC TCT GCCTGCC-GG CGAAGTACGCCGCGC TERM 108 93508 - 93488 - f 95 -13.9 -2.70932 | opp_overlap 93488 CCTGCCGGCGAAGTA CGCCGCGCC TGC GGCGCCGCG TATCTCCGCCAGTGC TERM 109 93488 - 93508 + F 95 -13.9 -2.87564 | opp_overlap 93488 CCTGCCGGCGAAGTA CGCCGCGCC TGC GGCGCCGCG TATCTCCGCCAGTGC TERM 110 93752 - 93731 - f 89 -11.5 -3.53012 | CGGCGCTGTCGTAAA CGGAGCCGG TAAA CCGTCTCCG CCCTGTCGGGCTTCC TERM 111 93833 - 93855 + F 100 -14.8 -3.61398 | GCGCCGCTCTCACCA GCCCGGCGGT AAT GCTGCCGGGC TTCTTCGGGGCAACG YPA_MT0089 94124 - 94354 + | hypothetical protein TERM 112 94393 - 94362 - f 70 -9.5 -2.82942 | gap 2, overlap 94361 CGCAGTAAGAAAGAG GTGCCCTGCCGGAGC GCGA ACTCCG-CAGGGC-C AGACAATCATCAATA YPA_MT0090 94427 - 96436 + | DNA-binding protein SEQUENCE gi|108793632|ref|NC_008121.1| Yersinia pestis Antiqua plasmid pPCP, complete sequence (length 10777) YPA_PCP0001 93 - 1115 + | transposase TERM 1 1196 - 1182 - g 77 -11.4 -3.3506 | overlap 1173 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_PCP0002 1115 - 1894 + | transposase/IS protein TERM 2 2362 - 2378 + F 73 -2.9 -5.23016 | TTCGTTGTAACGCGA TTTTCCG TAC CGGGCAA TTTTTTCAGTTGTTT TERM 3 2638 - 2657 + F 89 -3.5 -5.67063 | overlap 2641 ATGTGTCAGACTTCG TTCTCCC CCTTCC GGGTGAA TTTTTTTGTCATCCG TERM 4 2791 - 2759 - f 95 -7.5 -5.58209 | TCAAAGGCAAAAAAA TCCCCCGGAACAGGC GGA ACCCGGACAGGGGGA GAACGAATCGCTAAA YPA_PCP0008 2931 - 3125 + | replication regulatory protein TERM 5 3529 - 3545 + F 73 -2.9 -5.23016 | TTCGTTGTAACGCGA TTTTCCG TAC CGGGCAA TTTTTTCAGTTGTTT TERM 6 3805 - 3824 + F 89 -3.5 -5.67063 | overlap 3808 ATGTGTCAGACTTCG TTCTCCC CCTTCC GGGTGAA TTTTTTTGTCATCCG TERM 7 3958 - 3926 - f 95 -7.5 -5.58209 | TCAAAGGCAAAAAAA TCCCCCGGAACAGGC GGA ACCCGGACAGGGGGA GAACGAATCGCTAAA YPA_PCP0009 4098 - 4292 + | replication regulatory protein TERM 8 4342 - 4297 - T 100 -12.6 -3.55453 | gap 1, overlap 4282 4333 CAGGAACATAACGAA GCTCCCGG-AGACGGTCACAG CTTGT CTGTGAACGGATGCCGGGAGC AGACAAGCCCGTCAG TERM 9 4691 - 4703 + T 100 -10.5 -4.66609 | opp_overlap 4688 4689, overlap 4688 ACCCCAGAAAAGGCC GCGCC GGA GGCGC TTTTTCCATAGGCTC TERM 10 5206 - 5241 + T 100 -14.2 -3.53012 | opp_overlap 5214, overlap 5214 GAAACTTCTAACCTT CGAAAGAACCCACG CCTGAGAA CGTGGGTTTTTTCG TTTACAGGCAGCAGA TERM 11 5214 - 5233 + T 89 -6.4 -5.37593 | opp_overlap 5214, overlap 5206 TAACCTTCGAAAGAA CCCACG CCTGAGAA CGTGGG TTTTTTCGTTTACAG TERM 12 5233 - 5214 - T 74 -7.8 -3.9243 | opp_overlap 5214 5206 TAACCTTCGAAAGAA CCCACGCC TGAG AACGTGGG TTTTTTCGTTTACAG TERM 13 5290 - 5274 - T 100 -7.3 -5.61596 | opp_overlap 5274 5286, overlap 5286 ACGCGCAGAAAAAAA GGATCTC AAG AAGATCC TTTGATCTTTTCTAC TERM 14 5274 - 5290 + T 71 -6.6 -4.10958 | opp_overlap 5274 5286, overlap 5286 ACGCGCAGAAAAAAA GGATCT CAAGA AGATCC TTTGATCTTTTCTAC TERM 15 5981 - 5960 - T 100 -14.5 -3.40163 | opp_overlap 5957 5957 5951 5971 TATCATTAATAGCAA GCCCCTCAT TATT ATGAGGGGC TCATGGTTATTTTAA YPA_PCP0003 7061 - 5988 - | pesticin TERM 16 7142 - 7108 - H 100 -14.6 -5.87688 | ATAAGTTAAAAAAAA TACTGTACATAAAACC ACT GTTTTTATGTACAGTA ATAAAATTACGCCGC YPA_PCP0004 7290 - 7595 + | hypothetical protein TERM 17 8038 - 8014 - g 74 -7.1 -4.37337 | AGAAACAGGAAGAAA GATCAGCCAGT TAG ACTGGAAGATC AAAAATGTCGCTATC TERM 18 8089 - 8136 + G 70 -11.4 -2.64933 | gap 1 GGATCCATACTCATT TCTGACCCTGAATGCCAGGGG GTGGACG TCTCTGGC-TTCCGGGTCAGG TAATATGGATGACTA TERM 19 8384 - 8410 + G 73 -5.8 -4.54449 | opp_overlap 8384 AACTTCCCGAAAGGA GTGCGGGTAATA GGT TATAACCAGCGC TTTTCTATGCCATAT YPA_PCP0005 7838 - 8776 + | outer membrane protease TERM 20 8802 - 8825 + T 100 -16.8 -2.87132 | overlap 8804 TCATATCTCTCTTTT CATCCTCCCC TAGC GGGGAGGATG TCTGTGGAAAGGAGG TERM 21 8804 - 8823 + T 100 -13.6 -2.98823 | overlap 8802 ATATCTCTCTTTTCA TCCTCCCC TAGC GGGGAGGA TGTCTGTGGAAAGGA TERM 22 8860 - 8836 - T 71 -8.6 -3.53444 | overlap 8839 GGATGTCTGTGGAAA GGAGGTTGGT GTTTG ACCAACCTTC AGATGTGTGAAAAAT YPA_PCP0006 9262 - 8963 - | transcriptional regulator TERM 23 9076 - 9086 + g 71 -6.8 -4.2704 | TTAAATCATTTCCGC GCTG CTC CAGC TTTGTTACTGCTGGC YPA_PCP0007 9609 - 9262 - | hypothetical protein SEQUENCE gi|108793642|ref|NC_008122.1| Yersinia pestis Antiqua plasmid pCD, complete sequence (length 70299) YPA_CD0001 88 - 1110 + | transposase TERM 1 1191 - 1177 - g 77 -11.4 -3.3506 | overlap 1168 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_CD0002 1110 - 1889 + | transposase/IS protein YPA_CD0080 2174 - 1899 - | transposase ORFA TERM 2 2725 - 2757 + r 71 -9 -3.32536 | ATATATATTATCTCA GCCGTCAGCCGCCG TATCC TGGCGCATGGCGGC TTCTAGCAATAATTT YPA_CD0003 3069 - 2722 - | type III secretion regulatory protein YPA_CD0004 3926 - 3294 - | type III secretion system protein YPA_CD0005 4534 - 3905 - | type III secretion protein YPA_CD0006 5268 - 4534 - | type III secretion lipoprotein YPA_CD0007 5622 - 5275 - | type III secretion protein YPA_CD0008 6120 - 5623 - | type III secretion protein TERM 3 5915 - 5885 - G 73 -9.1 -3.65351 | TGATGTTGACCGAAA CG-CGCCAGTAACGC CTC ACGT-ACTGGCGTCG CCAAAACCTCAAGAA YPA_CD0009 6464 - 6117 - | type III secretion protein YPA_CD0010 6729 - 6466 - | type III secretion protein YPA_CD0081 6930 - 6730 - | type III secretion protein YPA_CD0011 8186 - 6927 - | type III secretion protein TERM 4 7832 - 7853 + g 71 -5.1 -4.55287 | TCCCAAGTCGTGAAC GAGGTAACC TGTC GGTTGGCTC TTTTCTCTGCGTGGG YPA_CD0012 10006 - 8183 - | type III secretion protein TERM 5 8520 - 8506 - G 74 -10 -3.57406 | opp_overlap 8504 8519, overlap 8504 GTTCGATGATAAACA GCCGTA CCG TACGGC GAGTTAACTCACTTT TERM 6 8707 - 8719 + g 72 -4.1 -4.87291 | GGATTCCGTCAATCC CTGAA CTA TTCGG TTTTTGGTTCCCATC YPA_CD0013 10425 - 10012 - | hypothetical protein YPA_CD0014 11643 - 10828 - | thermoregulatory protein TERM 7 11970 - 11960 - R 73 -5.4 -4.73973 | opp_overlap 11960 11962 ATAGAAAAGAATAAA GGTA GGT TACC TGTTTCGAAATGAGT TERM 8 12379 - 12341 - R 100 -15.6 -4.03234 | opp_overlap 12347, overlap 12342 CCTTGCGCATATAAA GCCAAACATCCTTTCTTT CAT AAAAAAAGGATGTTTGGT TAGAATCGGAATCAG TERM 9 12378 - 12342 - R 100 -19.1 -3.01726 | opp_overlap 12347, overlap 12341 CTTGCGCATATAAAG CCAAACATCCTTTCTTT CAT AAAAAAAGGATGTTTGG TTAGAATCGGAATCA TERM 10 12347 - 12373 + r 83 -9.6 -3.91911 | opp_overlap 12342 12341 GCATATAAAGCCAAA CATCCTTTCTTT CAT AAAAAAAGGATG TTTGGTTAGAATCGG YPA_CD0015 13802 - 12738 - | type III secretion protein YPA_CD0016 14587 - 13802 - | type III secretion protein TERM 11 14120 - 14108 - G 70 -4.7 -4.67011 | opp_overlap 14109 14110, overlap 14109 14110 AACTGCAGGGAAAAA GCTGG CCA CCGGC CAATTTACATAGCTG YPA_CD0017 14850 - 14584 - | type III secretion protein YPA_CD0018 15505 - 14852 - | type III secretion system protein YPA_CD0019 16425 - 15502 - | type III secretion system protein YPA_CD0020 17789 - 16422 - | type III secretion protein YPA_CD0021 18253 - 17789 - | type III secretion protein YPA_CD0022 19569 - 18250 - | type III secretion system ATPase TERM 12 19411 - 19380 - G 71 -11.6 -2.74605 | opp_overlap 19386, overlap 19376 19377 GTTGGGCAAAACCTA TGACTTCAGCCTGT AAAG ACAGGCTGTTGTCA GGGTTACGTAAGTAA TERM 13 19386 - 19405 + g 79 -12.2 -3.3344 | opp_overlap 19380 19376 19377 CAAAACCTATGACTT CAGCCTGT AAAG ACAGGCTG TTGTCAGGGTTACGT TERM 14 19634 - 19617 - H 71 -4.1 -4.7497 | opp_overlap 19629 19630, overlap 19629 TTTAGTGACTAAAAA CGCTAAA AAAT TGTAGCG GGAGCCGCGAGTTTT YPA_CD0023 19767 - 20648 + | membrane-bound Yop targeting protein YPA_CD0024 20629 - 20907 + | Yop secretion and targeting protein YPA_CD0025 20894 - 21265 + | type III secretion protein YPA_CD0026 21262 - 21630 + | type III secretion protein YPA_CD0027 21627 - 21971 + | type III secretion protein TERM 15 22653 - 22684 + G 78 -9.5 -3.89822 | TGAGGCACTGCAACT CTATTCCATCCTC ACTGTC GGGGATGGGATGG TTTCTCAGGTACCTG YPA_CD0028 21958 - 24072 + | membrane-bound Yop protein YPA_CD0029 24069 - 24509 + | low calcium response locus protein R YPA_CD0079 24551 - 24838 + | Yop regulator TERM 16 25712 - 25702 - g 76 -3.2 -5.08824 | opp_overlap 25706, overlap 25706 TGGTTAGCCAAAAAA CAAC TCA GCTG TCTGATATTACATCA YPA_CD0030 24840 - 25820 + | V antigen, antihost protein/regulator YPA_CD0031 25833 - 26339 + | yopB/yopD chaperone TERM 17 26709 - 26693 - g 91 -6.5 -5.14985 | opp_overlap 26692 26694, overlap 26694 GCAAAGACATAAAAA TCGCTGA TAT TCAGCGT CTTCATGAACAAAAC TERM 18 26708 - 26694 - g 77 -10 -3.67364 | opp_overlap 26692 26694, overlap 26693 CAAAGACATAAAAAT CGCTGA TAT TCAGCG TCTTCATGAACAAAA YPA_CD0032 26317 - 27522 + | Yop targeting protein YPA_CD0033 27541 - 28461 + | Yop negative regulation/targeting component TERM 19 28555 - 28595 + T 70 -7.8 -3.73068 | gap 1, opp_overlap 28550 28551 28561 28562, overlap 28551 28562 TAAGGTATAAGGTGC TGAAAAGCCCTGGATTAAC ATTA GTTAATCCAGGG-TTGTGA TTATTAAATTAAAAA TERM 20 28590 - 28561 - T 100 -13.7 -4.10007 | opp_overlap 28551 28555 28562, overlap 28550 28551 28562 ATAAGGTGCTGAAAA GCCCTGGATTAAC ATTA GTTAATCCAGGGT TGTGATTATTAAATT TERM 21 28589 - 28562 - T 100 -17.2 -3.05522 | opp_overlap 28551 28555 28562, overlap 28550 28551 28561 TAAGGTGCTGAAAAG CCCTGGATTAAC ATTA GTTAATCCAGGG TTGTGATTATTAAAT TERM 22 28562 - 28589 + T 100 -17.2 -3.6149 | opp_overlap 28550 28551 28562 28561, overlap 28551 28555 TAAGGTGCTGAAAAG CCCTGGATTAAC ATTA GTTAATCCAGGG TTGTGATTATTAAAT YPA_CD0034 29060 - 28929 - | hypothetical protein YPA_CD0035 29418 - 29095 - | transposase YPA_CD0082 29566 - 29444 - | hypothetical protein YPA_CD0036 29587 - 29796 + | hypothetical protein TERM 23 30211 - 30221 + F 74 -4 -5.00616 | opp_overlap 30211 ATAAATCCAAGAAAT GTAT CTA ATAC TTTTTTGCAAGAACC YPA_CD0037 30367 - 31419 + | targeted effector protein YPA_CD0038 31761 - 31462 - | protein 25 YPA_CD0039 31936 - 32127 + | hypothetical protein TERM 24 32770 - 32752 - T 71 -3 -4.93898 | opp_overlap 32769, overlap 32753 32756 ATACCAGCATAAAAA GCAGCGCA CAA TGCGGTGG CTATCACTAGTCGTT YPA_CD0040 33214 - 33092 - | hypothetical protein TERM 25 33697 - 33718 + r 70 -7.5 -3.8397 | opp_overlap 33697 33694 33699 TTATTATATAAACCA TATCTATTA AATT TAATAGATA TTATTGTAACTATGT YPA_CD0041 34177 - 33779 - | yopT chaperone YPA_CD0042 35145 - 34177 - | cytotoxic effector protein TERM 26 34886 - 34871 - G 73 -6.2 -4.46212 | GTGCTGAGTACAAAA TGTATC ATGC GATACA TAATCATACTGAAGG TERM 27 35542 - 35552 + H 74 -4 -4.91712 | GAAGCTCATTGAGAG TAGA TAT TCTA TTTTTATAAATTACG TERM 28 36066 - 36049 - H 71 -4.9 -4.63527 | overlap 36050 TTATGATCCGAAAAA CTCTCTA CTTA TAGAGAA TGATGACATAAAAAA TERM 29 36091 - 36108 + H 80 -4.9 -5.16133 | opp_overlap 36094, overlap 36092 AAAAAAATATTTATA TGATGAA GATT TTCATCG TTTTTGTATTATGCT YPA_CD0043 36337 - 36576 + | hypothetical protein TERM 30 36875 - 36865 - g 85 -4 -5.4251 | TCTACAGATAAAAAA TATC TCA GATA AAAATATGCTTGGCT YPA_CD0044 36803 - 37420 + | conjugative transfer surface exclusion protein YPA_CD0045 37527 - 37844 + | hypothetical protein YPA_CD0046 37868 - 38326 + | hypothetical protein YPA_CD0047 38438 - 38632 + | transposase remnant YPA_CD0083 38883 - 38770 - | hypothetical protein YPA_CD0048 39390 - 40598 + | plasmid-partitioning protein SopA YPA_CD0049 40595 - 41560 + | plasmid-partitioning protein TERM 31 41583 - 41601 + T 73 -5.9 -4.55209 | opp_overlap 41583 ATAAGATCAGAACAA GGTGGGT TGTCT GCCCGCC TTTATTTAGTGTATA YPA_CD0084 42278 - 42105 - | hypothetical protein TERM 32 42204 - 42230 + g 100 -13.1 -4.72986 | CTGACCTGGTCGACT GCCGACGTCAT TAAGC ATGATGTCGGC TTTTTGATAGCGATA YPA_CD0050 42822 - 43064 + | hypothetical protein YPA_CD0085 43057 - 43356 + | hypothetical protein TERM 33 43438 - 43409 - T 74 -4.4 -5.06451 | gap 2, opp_overlap 43410, overlap 43410 43412 GAGCATGCTAAAAAA CGATTCGCCCCTGA AAGA TCAGGGACGAA--G ATATTCGCAATATTG TERM 34 43437 - 43412 - T 100 -14.1 -3.38726 | opp_overlap 43410, overlap 43409 43410 CATGCTAAAAAACGA TTCGCCCCTGA AAGA TCAGGGACGAA GATATTCGCAATATT TERM 35 43481 - 43463 - T 71 -3 -4.99638 | opp_overlap 43461 43464, overlap 43464 ATATTGATAGAAAAA GGGGGAAA CAC TATCCCCT TGTTTTTATCCATAT TERM 36 43464 - 43480 + T 74 -6.5 -4.5448 | opp_overlap 43464 43463, overlap 43461 TATTGATAGAAAAAG GGGGAAA CAC TATCCCC TTGTTTTTATCCATA YPA_CD0051 44155 - 43496 - | outer membrane virulence protein TERM 37 44217 - 44205 - H 76 -7.7 -4.11394 | ATCTTAGTGGGAAAA TAGCC GAT GGCTA TATAAAAAATCGCTG YPA_CD0052 44349 - 44741 + | yopE chaperone YPA_CD0053 45418 - 44804 - | hypothetical protein TERM 38 45783 - 45768 - g 71 -10.4 -3.03338 | AGAATGTCTGGAATA GCGAGG TCAT CCTCGC GGAAATTAAGGCGAT YPA_CD0054 45551 - 46723 + | transposase YPA_CD0055 46723 - 47079 + | transposase YPA_CD0056 47496 - 47921 + | yopH targeting protein YPA_CD0057 48824 - 48069 - | transposase YPA_CD0058 49168 - 48902 - | transposase YPA_CD0059 50770 - 50219 - | resolvase TERM 39 51821 - 51804 - g 72 -9.9 -3.35774 | opp_overlap 51819 CATAAAGGCGTACAA CAGTTGG CGGT CCAACTG GATGAAACCTGGAGA YPA_CD0061 50934 - 53249 + | transposase YPA_CD0060 53626 - 53246 - | hypothetical protein TERM 40 54484 - 54474 - H 73 -5.4 -4.62054 | TCCAGAAAAAAAAGA GCTA GAT TAGC AGAAGCAATACAACC TERM 41 55074 - 55062 - g 73 -3.4 -5.0133 | GATGCGGCCAAAAAA CACT CAAAT AGTG TTGCCAGAACAACTT YPA_CD0062 54615 - 55535 + | hypothetical protein TERM 42 55569 - 55594 + F 100 -8.4 -4.76075 | opp_overlap 55569, overlap 55564 AAGTCTATAGGAAAA CACCGATTAC ATAATC GTAATTGGTG TTTTATTAATATGCT TERM 43 55594 - 55569 - f 74 -6.9 -4.35518 | opp_overlap 55564 55569 AAGTCTATAGGAAAA CACCGATTACA TAAT CGTAATTGGTG TTTTATTAATATGCT YPA_CD0086 55658 - 55864 + | hypothetical protein YPA_CD0063 56049 - 55861 - | hypothetical protein TERM 44 56191 - 56227 + H 100 -28.3 -3.35798 | opp_overlap 56196, overlap 56196 TTACGCGGCGCTGGA GTAAACCAATGGGCGGC ATG GCCGCCCATTGGTTTAC TTATCAGTACGCAGT TERM 45 56196 - 56222 + H 100 -22.4 -4.00868 | opp_overlap 56196, overlap 56191 CGGCGCTGGAGTAAA CCAATGGGCGGC ATG GCCGCCCATTGG TTTACTTATCAGTAC TERM 46 56222 - 56196 - H 100 -22.4 -3.72576 | opp_overlap 56196 56191 CGGCGCTGGAGTAAA CCAATGGGCGGC ATG GCCGCCCATTGG TTTACTTATCAGTAC YPA_CD0064 56199 - 56657 + | hypothetical protein YPA_CD0065 56829 - 57146 + | hypothetical protein YPA_CD0066 57170 - 57577 + | hypothetical protein YPA_CD0087 57839 - 57934 + | transposase remnant YPA_CD0067 57994 - 58242 + | phospholipase D/transphosphatidylase YPA_CD0068 58380 - 58634 + | replication protein TERM 47 58824 - 58778 - f 90 -7.4 -5.1417 | gap 1 CCAGAAAAGCAAAAA CCCCGATAAACTTCCTCATCT TTGGCG AGGCGA-GAAGGTTACCGGGG CCCACTTAAAACTGT TERM 48 58862 - 58836 - f 83 -8.9 -4.18018 | gap 1 GGGGCCCACTTAAAA CTGTATAGAAGC TGTT GCT-CTATACAG GGAGTATATGTGCAT TERM 49 59298 - 59317 + G 76 -4.8 -4.9792 | overlap 59289 ACCTTTCCATCACCC GCGCCACG CGTG CGCTGCGC TTTTTATCTGAGCTG YPA_CD0069 58943 - 59809 + | replication protein TERM 50 60349 - 60387 + F 100 -13.6 -3.61922 | opp_overlap 60349 CTTACCCACTAAAAA GCCGCCCCGCCCCGGGCC AAC GGCCCGGAACAGAGTGGC TTTACAATGAGTGTT TERM 51 60387 - 60349 - f 100 -20.2 -4.7497 | opp_overlap 60349 CTTACCCACTAAAAA GCCGCCCCGCCCCGGGCC AAC GGCCCGGAACAGAGTGGC TTTACAATGAGTGTT TERM 52 61312 - 61323 + F 78 -7.2 -4.45168 | CATCAGCCCTGGCAA GGCG AAGC CGCC TTTGTCTTTTGCAAC YPA_CD0070 61393 - 61671 + | transposase remnant TERM 53 62147 - 62180 + G 100 -5.9 -5.84432 | gap 1, opp_overlap 62158, overlap 62148 CCAATCTTAGGATTT TCTGGACCAGAGGCGC GCA GCGCCGCTAGTC-AGC TTTTTTTCTGTTATA TERM 54 62148 - 62179 + G 77 -9.4 -4.08219 | gap 1, opp_overlap 62158, overlap 62147 CAATCTTAGGATTTT CTGGACCAGAGGCGC GCA GCGCCGCTAGTC-AG CTTTTTTTCTGTTAT YPA_CD0088 61967 - 62416 + | hypothetical protein TERM 55 62580 - 62590 + G 74 -2.4 -5.14985 | GTGTTGCGCTTGAAC CCCC ACA GTGG TTTTTCTCTCTTTCG YPA_CD0071 62424 - 64622 + | targeted effector protein kinase TERM 56 64820 - 64834 + F 78 -5.8 -4.77757 | opp_overlap 64819 64820 GTAATAGAGAAAATT TTTGAT GCT ATCAAA TTTTCCTTTTTCGCA YPA_CD0072 65018 - 65884 + | targeted effector protein TERM 57 65992 - 66018 + F 73 -5.1 -4.65895 | opp_overlap 65993, overlap 65993 TGAAGAAACAGATTA ACTGGGGTTCT ACGCC GGAATCCCAGA TTTTTCCGTCACCCC YPA_CD0089 66165 - 66257 + | hypothetical protein YPA_CD0073 67117 - 66470 - | hypothetical protein YPA_CD0074 67078 - 67284 + | hypothetical protein TERM 58 67978 - 68014 + G 100 -26.7 -2.54523 | TCTCATTCACATTCA GCCCTTCACGCACCGGG AAC CCCGGTGCGTGAAGGAC TGCGTTCACATCTAG YPA_CD0075 67567 - 68973 + | protein-tyrosine phosphatase Yop effector TERM 59 69046 - 69082 + T 77 -11.2 -2.85999 | opp_overlap 69045 69050, overlap 69050 CAATCAAAGAAACTT TAAACCTCAACTAA AGTAAGCAA TTAGTTGAGGTTTA TCTGCTGTAGAATAA TERM 60 69050 - 69078 + T 76 -7.6 -4.11404 | opp_overlap 69045 69050, overlap 69046 CAAAGAAACTTTAAA CCTCAACTAA AGTAAGCAA TTAGTTGAGG TTTATCTGCTGTAGA TERM 61 69078 - 69050 - T 72 -7.6 -3.78141 | opp_overlap 69050 69046, overlap 69045 CAAAGAAACTTTAAA CCTCAACTAA AGTAAGCAA TTAGTTGAGG TTTATCTGCTGTAGA TERM 62 69220 - 69199 - T 78 -8.7 -3.74693 | CGCCACTGTATTAAA GGTGATCGT TTAG ACGGTCACC GAACTCGATAATAAA YPA_CD0076 69373 - 69194 - | hypothetical protein YPA_CD0077 69793 - 69485 - | transposase YPA_CD0078 70170 - 69790 - | transposase SEQUENCE gi|108805998|ref|NC_008150.1| Yersinia pestis Antiqua, complete genome (length 4702289) YPA_0001 710 - 270 - | flavodoxin YPA_0002 1264 - 803 - | DNA-binding transcriptional regulator AsnC YPA_0003 1434 - 2426 + | asparagine synthetase AsnA TERM 1 2454 - 2482 + T 100 -9.5 -4.84529 | ATCCCCCTATGCTAA CTCGCGATAACGG TAT CAGTCATCGCGGG TTTTTAACTTTATCA yieM 3991 - 2525 - | hypothetical protein TERM 2 3614 - 3626 + g 86 -6.9 -5.02476 | overlap 3615 CGTTTGCAGGCTATC TCCGC CTG GCGGG TTTTTTGCCAGGTCT YPA_0005 5482 - 3995 - | regulatory ATPase RavA TERM 3 4921 - 4937 + g 71 -5.1 -4.46212 | overlap 4923 ACTGGTGGAATTCTT CATCAGT GAT ACTGAGG TTTTCTGCTACCGGG TERM 4 4989 - 4999 + g 76 -3.2 -5.18726 | CTGATCAGCAGTGAG CGGA AAT TCTG TTTTTCTTGTACCCG TERM 5 5530 - 5548 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0006 5552 - 6574 + | transposase for insertion sequence IS100 TERM 6 6655 - 6641 - g 77 -11.4 -3.3506 | overlap 6632 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0007 6574 - 7353 + | transposase/IS protein TERM 7 7416 - 7434 + T 75 -8.9 -3.72576 | overlap 7404 7403 TTTTCATCCGTCGTT GACAGGA TGGCT TCCTGTC TTTCATACAGCCCAC YPA_0008 7507 - 7397 - | hypothetical protein TERM 8 7863 - 7884 + G 73 -3 -4.94902 | ATATTGGCACCAGCC CACTCTAT ACCTTG AGAGAGTG TTTTTCTGGTCATTA TERM 9 9215 - 9182 - g 74 -11.7 -2.72471 | gap 1, opp_overlap 9183 9185, overlap 9181 9185 GCTTCACTAGAGAAG TCACCGCCAGTACGGG TAC CCGGTAC-GGCGGTGT ATATGTCGCGAGCAA TERM 10 9183 - 9214 + G 86 -15.2 -2.98823 | gap 1, opp_overlap 9182 9181 9185, overlap 9185 CTTCACTAGAGAAGT CACCGCCAGTACGGG TAC CCGGTAC-GGCGGTG TATATGTCGCGAGCA TERM 11 9185 - 9212 + G 77 -12 -3.05022 | gap 1, opp_overlap 9185 9182 9181, overlap 9183 TCACTAGAGAAGTCA CCGCCAGTACGGG TAC CCGGTAC-GGCGG TGTATATGTCGCGAG TERM 12 9212 - 9185 - g 73 -12 -2.64051 | gap 1, opp_overlap 9183 9185, overlap 9182 9181 TCACTAGAGAAGTCA CCGCCAGTACGGG TAC CCGGTAC-GGCGG TGTATATGTCGCGAG trkD 7781 - 9649 + | potassium transport protein Kup TERM 13 9682 - 9650 - f 76 -10 -3.29211 | gap 1, opp_overlap 9654, overlap 9645 9638 9654 CAAGTGGAAATTTAA TTG-AGAGGCCGTTA ATCA TAACGGCCTCTTCTA TCATCATTCACACTA TERM 14 9677 - 9654 - f 100 -15.4 -2.58812 | opp_overlap 9654, overlap 9650 9645 9638 TGGAAATTTAATTGA GAGGCCGTTA ATCA TAACGGCCTC TTCTATCATCATTCA TERM 15 9654 - 9677 + F 100 -15.4 -3.57731 | opp_overlap 9654 9650 9645 9638 TGGAAATTTAATTGA GAGGCCGTTA ATCA TAACGGCCTC TTCTATCATCATTCA YPA_0010 9854 - 10273 + | D-ribose pyranase YPA_0011 10324 - 11250 + | ribokinase YPA_0012 11303 - 11473 + | hypothetical protein YPA_0013 12894 - 11470 - | putative membrane transport protein TERM 16 11668 - 11654 - G 76 -4.2 -4.92783 | overlap 11655 11661 AACCCATCATAAAAA CGCAAC ACA GTCGCA CTGATAGCAATCCCA YPA_0014 13666 - 12974 - | putative GntR-famly transcriptional regulator TERM 17 13549 - 13566 + g 76 -12.7 -2.6544 | overlap 13548 CCAACTCTATTTCGC CGGGCAG TATA CTGCCCG CTTCATATTCTCCTG TERM 18 16069 - 16032 - H 78 -5.7 -4.7629 | opp_overlap 16032 16026 16035, overlap 16035 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 19 16066 - 16035 - H 78 -7.4 -4.47888 | opp_overlap 16035 16032 16026, overlap 16032 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 20 17525 - 17507 - H 82 -10.3 -3.57798 | overlap 17520 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 21 17985 - 17959 - H 70 -9.4 -2.75844 | opp_overlap 17973 17981, overlap 17958 17961 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 22 18032 - 18021 - H 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 23 19144 - 19154 + H 74 -6.8 -4.27316 | opp_overlap 19144 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 24 19622 - 19654 + H 100 -13.6 -4.62783 | gap 1, opp_overlap 19622 19628, overlap 19628 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 25 19654 - 19622 - H 100 -11.4 -4.50627 | gap 1, opp_overlap 19622 19628, overlap 19628 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 26 19647 - 19628 - H 95 -9.2 -4.50993 | opp_overlap 19622 19628, overlap 19622 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG TERM 27 19628 - 19647 + H 100 -11.4 -4.98672 | opp_overlap 19628 19622, overlap 19622 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG YPA_0015 20351 - 21280 + | homoserine O-succinyltransferase TERM 28 21325 - 21345 + T 70 -7.5 -3.8165 | opp_overlap 21324, overlap 21322 ATAGATGCTAATTAT GGCGGCT GAATCGA GGCCGCC TATTATTTTCTTCCC YPA_0016 21623 - 21480 - | hypothetical protein TERM 29 22312 - 22323 + G 74 -7.2 -4.27843 | opp_overlap 22301, overlap 22309 GCAACTGCTGGCGAA GGGC AGCG GCCC TTATTTCTATTTGCC YPA_0017 21701 - 23299 + | malate synthase YPA_0018 23346 - 24653 + | isocitrate lyase TERM 30 24789 - 24763 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 24772, overlap 24764 24779 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 31 24790 - 24764 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 24772, overlap 24763 24779 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 32 24864 - 24887 + F 74 -6.6 -4.4009 | opp_overlap 24864 24863, overlap 24868 CACTTTGTCAATAAC CTCAGCCTGC TTAT GCAGGCTCCG TTTTGTACGGTAGGG TERM 33 24868 - 24883 + F 75 -10.4 -2.80345 | opp_overlap 24864 24863, overlap 24864 TTGTCAATAACCTCA GCCTGC TTAT GCAGGC TCCGTTTTGTACGGT TERM 34 26479 - 26498 + G 73 -2.8 -5.0133 | gap 1 GCCATTTCTTATGCA GTGACCGGA AAG TCAGG-CAC TTTTTTGAGGAGATG aceK 24909 - 26636 + | bifunctional isocitrate dehydrogenase kinase/phosphatase protein YPA_0020 27349 - 26756 - | repressor of aceBA operon TERM 35 27395 - 27380 - H 71 -4.6 -4.71828 | ACCTGACGAACAAAA CCCTGC TGTT GCATGG TCGTGAGTAAACGGT TERM 36 29753 - 29741 - g 74 -4.1 -4.9218 | GATTTAGCAGAAAAA TACCG TGA CAGTA AAAGTGGCGAGGTCG TERM 37 30556 - 30521 - g 87 -7.5 -5.0133 | opp_overlap 30521 CACGCCCGTAAAAAA CCGCGCACCCCGC CGGTCAGTTT GCAGGCTGCACGG AATAACCCAACGGTG metH 27815 - 31510 + | B12-dependent methionine synthase TERM 38 31535 - 31588 + T 80 -8.9 -3.967 | opp_overlap 31544, overlap 31543 31548 AAAGGCGAGATAATG TTGATCTAACGAGGGGGATAAACCG TGAT TGGTTTATCCCCTTCGATATTACAG TTTAATTAATGGATT TERM 39 31543 - 31580 + T 100 -15.7 -3.13784 | opp_overlap 31544, overlap 31535 31548 GATAATGTTGATCTA ACGAGGGGGATAAACCG TGAT TGGTTTATCCCCTTCGA TATTACAGTTTAATT TERM 40 31579 - 31544 - T 100 -16.3 -3.0701 | opp_overlap 31543 31535 31548 ATAATGTTGATCTAA CGAGGGGGATAAACC GTGATT GGTTTATCCCCTTCG ATATTACAGTTTAAT TERM 41 31548 - 31575 + T 100 -15 -3.19293 | opp_overlap 31544, overlap 31543 31535 TGTTGATCTAACGAG GGGGATAAACCG TGAT TGGTTTATCCCC TTCGATATTACAGTT YPA_0022 36513 - 31606 - | hemolysin TERM 42 32109 - 32122 + g 93 -8.1 -5.13722 | TATAGCTGATGGTCT GGACG CTAT CGTCC TTTTCTTTTCCTAAG TERM 43 32419 - 32443 + g 70 -4.4 -4.67982 | gap 1, overlap 32421 AGCGCTGTTCAGGGT CACCT-TATCA CTGT TGATATGGGTG TTTTGTTGCGTCACA TERM 44 33120 - 33153 + g 82 -10.9 -3.9344 | CACTGGTGCTGCCTT GACTATGGCCGCCGC CCAA GCCGCCGCCAAAGTC TTTACTGTTCGGCTT YPA_0023 38082 - 36583 - | hemolysin activator protein TERM 45 36733 - 36744 + gr 76 -5.8 -4.72272 | opp_overlap 36699, overlap 36721 CCCCATAGCGCTGAC CCAC CCCT GTGG TTTTTGCTGGAGACG YPA_0024 38359 - 38012 - | hypothetical protein TERM 46 38593 - 38611 + r 74 -4.5 -4.89393 | opp_overlap 38593, overlap 38603 38604 CGTGTTAGCAGTGAA TGCCCGA TGATC TCAGGCA TTTTTCTGAGGTTTA YPA_0025 40225 - 38840 - | aspartate kinase III TERM 47 40880 - 40861 - g 82 -11.4 -3.75115 | opp_overlap 40859 40861 40876, overlap 40857 TGGTGAGAAAATTAA CCGCACAG AAGA CCGTGCGG TATTGCATATTGCTC pgi 40595 - 42241 + | glucose-6-phosphate isomerase TERM 48 42281 - 42303 + F 100 -10.6 -5.86332 | ATCTGTACTTTATTA GGCCTCTTAT TCT GTAAGGGGCC TTTTTTTTGGCTTGA TERM 49 42452 - 42466 + G 87 -4.2 -5.52384 | overlap 42464 GATTGATTATGTTGG CCGCTA TTT TGGTGG TTTTTTTGGTGAAGG YPA_0027 42376 - 42783 + | phosphate-starvation-inducible protein PsiE TERM 50 42848 - 42828 - T 100 -9.6 -5.24799 | overlap 42829 TGATAAACATAAAAA TGGCGGCC ATTAA GGCCGCCC TAAAGACACAGTACC TERM 51 42847 - 42829 - T 100 -13.1 -3.73253 | overlap 42828 GATAAACATAAAAAT GGCGGCC ATTAA GGCCGCC CTAAAGACACAGTAC malG 43816 - 42926 - | maltose transporter permease malF 45407 - 43830 - | maltose transporter membrane protein TERM 52 45350 - 45364 + g 80 -2.1 -5.42198 | gap 1, overlap 45352 ATTTAAGCGCATCAC TCTGCC ACCA GGC-GA TTTTCTTTTTTCGGC TERM 53 45555 - 45576 + r 95 -11.5 -3.87815 | ATGGCAAATTCTGTC GAGGCACGG CGAA CCGTGCCCC TTTCTCAGAGTAGAC malE 46805 - 45594 - | maltose ABC transporter periplasmic protein TERM 54 46548 - 46510 - G 76 -7.5 -4.29738 | gap 1, opp_overlap 46543 GCATAGCCACCAAAA CGGTCATGGGCCCAGA AGATAATG TCCGGGCC-ATCACCG GTTGCGGCGACTTGT YPA_0031 47393 - 47629 + | hypothetical protein TERM 55 47861 - 47841 - g 70 -11.1 -2.64466 | opp_overlap 47836, overlap 47840 AACGCATGAATGAAG TGCCGCCCT CTG AGCGCGGCA TTGGCATGGTGTTTC YPA_0032 47633 - 48742 + | maltose/maltodextrin transporter ATP-binding protein lamB 48813 - 50084 + | maltoporin TERM 56 50096 - 50115 + F 80 -11.4 -2.66969 | overlap 50093 50093 GTAACAGCGATTCTT CAGCCGTC TGCG GGCGGCTG TACGTTATCTTGATG TERM 57 50513 - 50527 + G 79 -11.4 -3.52906 | opp_overlap 50512, overlap 50510 AGATATTCAACTTAC TGCGGG CAG CCCGCA TATTTCTCAGGGTGA TERM 58 50553 - 50563 + G 79 -8.2 -4.28774 | GGTGAGGTTGAAGGC GCGG TAG CCGC TTTTGCCTTGCCTGC TERM 59 50742 - 50715 - g 74 -4.9 -4.7497 | gap 1, overlap 50735 TTCACCTATGAAAAA GCGGGC-ATCAT GATCA ATGATCGCCTGC AAGGCGTGATGAAAT YPA_0034 50325 - 51236 + | maltose regulon periplasmic protein TERM 60 51269 - 51286 + F 100 -12.7 -5.41359 | TATGGCTGGATGGTT GGTGCGC CTTG GCGCACC TTTTTTCGTTTGGTT YPA_0035 51575 - 51985 + | hypothetical protein TERM 61 52124 - 52095 - T 100 -13.7 -4.7871 | overlap 52096 AACCATCAGTAAAAA CCAGCAGCCAATA ACCT CATTGGCTGCTGA AGAAATACAATATTA TERM 62 52123 - 52096 - T 100 -15 -3.46141 | overlap 52095 ACCATCAGTAAAAAC CAGCAGCCAATA ACCT CATTGGCTGCTG AAGAAATACAATATT YPA_0036 52655 - 52137 - | hypothetical protein TERM 63 53539 - 53512 - g 79 -5.6 -5.01732 | AATGTGGCGAAAAAA GTTCCAGAGCTC AAAA AAATTCTGGAAC TACGGGAAGCGTTAG YPA_0037 53179 - 53676 + | hypothetical protein TERM 64 54428 - 54447 + G 70 -8.6 -3.80094 | AAATGGCGTGCTCTG CGTGAGTC TGAA GATTCACG TTATCTTGGTTTGAC TERM 65 54902 - 54888 - g 74 -8.6 -3.97406 | overlap 54879 54898 GGAAAATGGCAGAAA CCAACT ACA AGTTGG GCACGCAACTGCCGT YPA_0038 53744 - 55225 + | hypothetical protein YPA_0039 55232 - 55672 + | hypothetical protein TERM 66 55878 - 55847 - gT 70 -2.4 -5.00884 | gap 1, opp_overlap 55848 55851, overlap 55848 55851 ACCTGCGTGAAAAAA TCGATGA-TCAATTC CCT GAATTGACTCATGGT TTACTGAATATGTTG TERM 67 56807 - 56825 + GT 77 -11 -2.73735 | overlap 56800 56817 56819 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPA_0041 57573 - 56788 - | transposase for insertion sequence IS1661 YPA_0040 55672 - 56898 + | hypothetical protein YPA_0042 58163 - 57627 - | insertion element IS1661 DNA-binding protein TERM 68 58193 - 58147 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 58153 58185, overlap 58152 58173 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCAACTTGGCCCCT TERM 69 58188 - 58152 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 58153 58185, overlap 58147 58173 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCAACTTGG TERM 70 58153 - 58188 + g 79 -12.7 -3.06831 | opp_overlap 58152 58147 58173, overlap 58185 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCAACTTGG TERM 71 58183 - 58173 - R 75 -5.4 -4.88736 | opp_overlap 58153, overlap 58152 58147 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAA rpsO 58498 - 58229 - | 30S ribosomal protein S15 TERM 72 58606 - 58623 + r 91 -6.9 -5.56263 | opp_overlap 58609, overlap 58609 TCGCGGGATCGCAAG GCAGGCC GTGT GGCCTAC TTTTTATTTTCTACT truB 59594 - 58620 - | tRNA pseudouridine synthase B rbfA 60004 - 59594 - | ribosome-binding factor A TERM 73 60018 - 60049 + r 81 -10.8 -3.36515 | opp_overlap 60021, overlap 60016 60019 ATTTGGATTCTCCAG ACAGTTTGGGGGGC CAAG GCCCCCCAAATGGA TATTTGCAAATCAGA TERM 74 60019 - 60048 + r 95 -14.3 -2.61695 | opp_overlap 60021, overlap 60018 60016 TTTGGATTCTCCAGA CAGTTTGGGGGGC CAAG GCCCCCCAAATGG ATATTTGCAAATCAG TERM 75 60046 - 60021 - R 93 -13.3 -2.87931 | opp_overlap 60019 60018 60016 TGGATTCTCCAGACA GTTTGGGGGGC CAAG GCCCCCCAAAT GGATATTTGCAAATC infB 62724 - 60070 - | translation initiation factor IF-2 TERM 76 62239 - 62252 + g 76 -3.1 -5.19261 | ACGTGCTTTATCGGT CTGAG CTGG CTTAG TTTTTTCGTCGGTTT nusA 64236 - 62749 - | transcription elongation factor NusA YPA_0048 64710 - 64258 - | hypothetical protein TERM 77 64748 - 64735 - R 100 -8.1 -5.80248 | CAAGACATAAAAAAA GGGCT TAAT AGCCC AGTGATTCTGCTGTC TERM 78 64798 - 64770 - R 100 -12.5 -3.90744 | opp_overlap 64776 64777, overlap 64777 TCTGCTGTCAAATAA CAAAAAACCCCGA AAT TCGGGGCTTTATG CAACTGGACCCTGTT TERM 79 64776 - 64792 + r 72 -7.9 -3.87815 | opp_overlap 64770 64777, overlap 64777 GTCAAATAACAAAAA ACCCCGA AAT TCGGGGC TTTATGCAACTGGAC TERM 80 64777 - 64791 + r 83 -11.4 -2.92475 | opp_overlap 64770 64777, overlap 64776 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 81 64791 - 64777 - R 100 -11.4 -5.72254 | opp_overlap 64777 64776, overlap 64770 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 82 64815 - 64827 + r 76 -10.5 -3.06501 | AACTGGACCCTGTTT GCCGC AAA GCGGC TTCGGTGCAACTCTC TERM 83 64927 - 64913 - R 100 -7.2 -5.79526 | opp_overlap 64915 ACATTTGAAAAAAAA CACTTT AGG AAAGTG GTTGCGGGGGCCGGA TERM 84 65162 - 65192 + r 74 -9.9 -3.08603 | opp_overlap 65160, overlap 65161 GGCACTGATTCAACT GGTTGTTTTTACT GTCCA AGTAACAACAACC CTTTTAAAACTCTTT secG 65577 - 65242 - | preprotein translocase subunit SecG TERM 85 65767 - 65787 + r 83 -11.1 -3.53761 | TCAGCGTAATTTCTT GGGGAAGAG TGC CTCTCCCCC TTTAAAAAAGGGTTA glmM 67140 - 65800 - | phosphoglucosamine mutase TERM 86 66251 - 66241 - G 71 -6.8 -4.24342 | opp_overlap 66240 TTTGGCACGAACAAA TGGG ATA CCCA GATCTTTCAGGGCTA folP 67983 - 67150 - | dihydropteroate synthase TERM 87 68042 - 68059 + r 90 -11.3 -3.71284 | opp_overlap 68042 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA TERM 88 68059 - 68042 - R 100 -11.3 -5.84381 | opp_overlap 68042 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA hflB 70037 - 68103 - | ATP-dependent metalloprotease TERM 89 69949 - 69931 - G 72 -8.2 -3.83205 | ACGTCGGACATGAAA GTAGAGTA ATC CACTCTAC GGCCATTCGATTCGC rrmJ 70723 - 70094 - | 23S rRNA methyltransferase J YPA_0054 70870 - 71163 + | hypothetical protein TERM 90 71185 - 71195 + T 74 -6.8 -4.35483 | opp_overlap 71185 71184 TTGTTTTAGAGAAAG GTGC CAT GCAC TTTGTTCTGATAAAA TERM 91 71205 - 71230 + T 100 -10.5 -4.88405 | opp_overlap 71211, overlap 71206 ATGCACTTTGTTCTG ATAAAAGGCCG CTTG CGGCCTTTTAC TTTTCTTTACAACTT TERM 92 71206 - 71229 + T 100 -14 -3.51958 | opp_overlap 71211, overlap 71205 TGCACTTTGTTCTGA TAAAAGGCCG CTTG CGGCCTTTTA CTTTTCTTTACAACT TERM 93 71224 - 71211 - T 88 -9.5 -4.36914 | opp_overlap 71206 71205 TTTGTTCTGATAAAA GGCCG CTTG CGGCC TTTTACTTTTCTTTA greA 71767 - 71291 - | transcription elongation factor GreA TERM 94 71618 - 71633 + g 72 -4 -4.88918 | gap 1, overlap 71610 TTGTTGCTCACGGGC TGCGTGA TAT TC-CGCA TTTTCTTTCAAGTCG TERM 95 71902 - 71882 - H 100 -3.9 -6.5058 | ATAAACAAAAAAAAA CCTAGGGCC AAA AACCCCAAG TCAGGATCAATTTTG TERM 96 72974 - 72955 - g 70 -2.2 -5.03715 | gap 1 ATCATGCTGAAAAAA TCAGACAAT ATG ATCG-CTGA CACCGTCTTCAGAAC YPA_0056 72025 - 73473 + | D-alanyl-D-alanine carboxypeptidase/endopeptidase YPA_0057 73479 - 74141 + | DNA-binding transcriptional regulator BasR YPA_0058 74138 - 75205 + | sensor protein BasS/PmrB TERM 97 75278 - 75247 - T 100 -9.5 -5.0133 | CACCCTGCCAAAAAA TAAGGGCCACCAC GAAAAA ATGGCAGCCCTTA TTCAAAGAATAACTG obgE 76472 - 75300 - | GTPase ObgE TERM 98 76496 - 76521 + r 79 -6.9 -4.62441 | gap 1, opp_overlap 76492, overlap 76496 TCCGTAAATCATTCA CC-GGCTGCTTT TGC AAAGCAACCAGG TTTATTTCTGTCCGA YPA_0060 77459 - 76473 - | hypothetical protein TERM 99 77518 - 77496 - R 100 -12 -4.84529 | opp_overlap 77496 CCAGAAATGTAAAAA GCCCCGCAAC GAA ATTGCAGGGC TTACATCTATTTACA rpmA 77804 - 77547 - | 50S ribosomal protein L27 rplU 78135 - 77824 - | 50S ribosomal protein L21 YPA_0063 78395 - 79366 + | octaprenyl diphosphate synthase TERM 100 79412 - 79394 - T 89 -10.3 -3.96224 | opp_overlap 79394 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG TERM 101 79394 - 79412 + T 89 -10.3 -3.93236 | opp_overlap 79394 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG YPA_0064 79810 - 79463 - | hypothetical protein TERM 102 79861 - 79851 - H 73 -2.6 -5.16969 | GACACAAAAAAGAAA TTTT TAG AAAA CATTTAAATTTTTTT YPA_0065 79994 - 80269 + | putative DNA-binding protein TERM 103 80367 - 80399 + T 95 -7.8 -5.08178 | opp_overlap 80367 ATCATTACAATATCA GGGGCTACTG TTCGTACTCTTTT CAGTAGCCCC TTTTTATCTCTATAT TERM 104 80653 - 80638 - T 74 -10.4 -2.59431 | overlap 80634 GCCTCGCAGAAGCGA GGCCCA TGGA TGGGCC GAGTAACGCTTGCAG YPA_0066 81641 - 80703 - | malate dehydrogenase YPA_0067 82105 - 82575 + | arginine repressor TERM 105 82622 - 82604 - f 75 -7.4 -4.3129 | opp_overlap 82604 CACCGAGCAGTAAAA TGCGGC CTTATGT GCCGCA TTATCTCACCCTCGC YPA_0068 82964 - 83227 + | hypothetical protein TERM 106 83331 - 83357 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 83320, overlap 83326 83332 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 107 83332 - 83358 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 83320, overlap 83326 83331 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 108 83421 - 83444 + T 85 -9.6 -4.12188 | overlap 83423 TTGTCAGCAGTCTGC AATGCCCCAT TAAC ATGGGGCATA TTTTCAAGATGATGA TERM 109 83423 - 83442 + T 93 -12.2 -3.6581 | overlap 83421 GTCAGCAGTCTGCAA TGCCCCAT TAAC ATGGGGCA TATTTTCAAGATGAT YPA_0069 84905 - 83523 - | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me so-diaminopimelate ligase TERM 110 85351 - 85361 + G 73 -5.4 -4.72272 | opp_overlap 85349 85351 CTCCGAAGAAGAAGA TGAC ATT GTCA TTTTTGATGGCGGAA TERM 111 86040 - 86030 - g 73 -5.4 -4.63218 | TTCGTGGGAACAAAA TCCA TGG TGGA AGATGCGGAAGGGTT YPA_0070 85076 - 86089 + | fructose-1,6-bisphosphatase TERM 112 86149 - 86129 - f 100 -13.3 -3.40836 | opp_overlap 86129, overlap 86121 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC TERM 113 86129 - 86149 + F 100 -11.1 -5.72622 | opp_overlap 86121 86129 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC YPA_0071 86289 - 86816 + | inorganic pyrophosphatase TERM 114 86841 - 86892 + T 100 -9.4 -5.84381 | gap 1, opp_overlap 86841 86859 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 115 86892 - 86841 - T 100 -7.2 -5.60993 | gap 1, opp_overlap 86841, overlap 86859 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 116 86875 - 86859 - T 73 -10.1 -3.04144 | opp_overlap 86841, overlap 86841 CGCCTATCGTGAACA GGCCCCA AAA TAGGGCC GTTTACCTTGTGCGG YPA_0072 87290 - 86934 - | hypothetical protein YPA_0073 91210 - 87293 - | hypothetical protein YPA_0074 92943 - 91207 - | hypothetical protein TERM 117 93733 - 93707 - g 82 -7.3 -4.68424 | CAAGCCATGGAAAAA GCCGGTGATCA ACGGG TGATTACCAGC GAAATTACGGTTGCC YPA_0075 93218 - 93856 + | methionine sulfoxide reductase A TERM 118 94381 - 94402 + G 71 -5.2 -4.43844 | CCGCTTTCTCCCCTT CGTTCAAA CTCGTT TTTGAGCG TTTTATGGCTCCTGA TERM 119 94785 - 94800 + G 74 -7.6 -4.12738 | CCTTCCTCCATGACT TCACGT GAAA ACGTGA TTTACTTTGATCTAC YPA_0076 94134 - 95465 + | hypothetical protein TERM 120 95502 - 95527 + T 77 -10.4 -3.14468 | opp_overlap 95505, overlap 95505 TGATCACGGTAAACA TAACGGCCCC TGAGTT GGGGCCGTGA TTAAATCTGCTCAGG TERM 121 95505 - 95524 + T 83 -12.1 -2.77658 | opp_overlap 95505, overlap 95502 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC TERM 122 95524 - 95505 - T 100 -12.1 -3.82946 | opp_overlap 95502 95505 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC YPA_0077 95785 - 95573 - | hypothetical protein TERM 123 96667 - 96639 - g 84 -15.3 -2.84812 | opp_overlap 96637 96637, overlap 96661 ACTGACATCAGCAGA GGTGCAGCAGGTC ATC GACCAACTGCACC AACTTGTGCAGCAAT YPA_0078 96121 - 96684 + | hypothetical protein YPA_0079 97427 - 96687 - | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase cpdB 97874 - 99832 + | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 124 99903 - 99959 + F 100 -15.7 -3.02096 | opp_overlap 99903 99904, overlap 99910 99953 GGAGTTATATCACAA TCTATAACATGCATTTATTATGCATGT TAT AGGTGTATAATAAATACATGTTATAGA TATATAATTACTCAA TERM 125 99959 - 99903 - f 100 -13.6 -3.47573 | opp_overlap 99903 99910 99953, overlap 99904 GGAGTTATATCACAA TCTATAACATGCATTTATTATGCA TGTTATAGG TGTATAATAAATACATGTTATAGA TATATAATTACTCAA TERM 126 99934 - 99904 - f 95 -14.3 -2.68223 | opp_overlap 99903 99910, overlap 99903 GAGTTATATCACAAT CTATAACATGCAT TTATT ATGCATGTTATAG GTGTATAATAAATAC YPA_0081 99987 - 100652 + | cell morphogenesis/cell wall metabolism regulator TERM 127 100732 - 100700 - T 100 -22.9 -4.44046 | opp_overlap 100707, overlap 100701 CTTATCGTAAATAAA CGCCAAAGGGCGACA CCC TGTCGCCCTTTGGCA TAATCGGTACCAAGG TERM 128 100731 - 100701 - T 100 -24.2 -3.25946 | opp_overlap 100707, overlap 100700 TTATCGTAAATAAAC GCCAAAGGGCGACA CCC TGTCGCCCTTTGGC ATAATCGGTACCAAG TERM 129 100707 - 100725 + T 100 -14.6 -3.62275 | opp_overlap 100701 100700 TAAATAAACGCCAAA GGGCGACA CCC TGTCGCCC TTTGGCATAATCGGT YPA_0082 101370 - 100750 - | peptidyl-prolyl cis-trans isomerase YPA_0083 101712 - 102452 + | hypothetical protein YPA_0084 102592 - 103047 + | hypothetical protein TERM 130 103095 - 103063 - T 100 -11.3 -4.50058 | opp_overlap 103070, overlap 103067 103069 103070 TACCGATAACCAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 131 103091 - 103067 - T 100 -9.9 -4.80487 | opp_overlap 103070, overlap 103063 103069 103070 GATAACCAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 132 103089 - 103069 - T 100 -12.5 -3.99559 | opp_overlap 103070, overlap 103067 103063 103070 TAACCAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 133 103088 - 103070 - T 100 -16 -2.98108 | opp_overlap 103070, overlap 103069 103067 103063 AACCAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 134 103070 - 103088 + T 100 -16 -4.8048 | opp_overlap 103070 103069 103067 103063 AACCAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_0085 103627 - 103169 - | transposase for the IS1541 insertion element TERM 135 103740 - 103758 + r 100 -16 -4.36914 | opp_overlap 103740 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAG TERM 136 103758 - 103740 - R 100 -16 -3.07307 | opp_overlap 103740 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAG TERM 137 103802 - 103774 - R 95 -14 -2.57132 | opp_overlap 103779, overlap 103779 TTTTCTGGGCACAAG CAAAACGCCAGC ACTAG GCTGGCGTTTTA ACAGGTTACAGCCGC TERM 138 103797 - 103779 - R 100 -11.7 -4.48987 | opp_overlap 103779, overlap 103774 TGGGCACAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA TERM 139 103779 - 103797 + r 100 -11.7 -4.11484 | opp_overlap 103779 103774 TGGGCACAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA rplI 104275 - 103823 - | 50S ribosomal protein L9 rpsR 104542 - 104315 - | 30S ribosomal protein S18 YPA_0088 104867 - 104547 - | primosomal replication protein N rpsF 105265 - 104873 - | 30S ribosomal protein S6 TERM 140 104920 - 104945 + g 70 -9.1 -3.50832 | gap 1, overlap 104916 104919 CATTGGCTTCTGACG CGAA-GTCGTGA CGC TCACGGCGTTCG TCTTTCGCTTTAACC YPA_0090 105557 - 105279 - | hypothetical protein YPA_0091 106333 - 105632 - | esterase TERM 141 106368 - 106386 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0092 106390 - 107412 + | transposase for insertion sequence IS100 TERM 142 107493 - 107479 - g 77 -11.4 -3.3506 | overlap 107470 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0093 107412 - 108191 + | transposase/IS protein TERM 143 108514 - 108468 - f 100 -15.4 -3.05384 | gap 1, opp_overlap 108474, overlap 108473 108494 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCATGCGTGGGTTC TERM 144 108509 - 108473 - f 77 -10.3 -3.19192 | gap 1, opp_overlap 108474, overlap 108468 108494 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCATGCGTG TERM 145 108474 - 108509 + F 93 -12.7 -3.08133 | opp_overlap 108473 108468 108494 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCATGCGTG TERM 146 108504 - 108494 - f 75 -5.4 -4.88736 | opp_overlap 108474, overlap 108473 108468 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAT TERM 147 108750 - 108783 + F 87 -5.5 -5.47399 | opp_overlap 108750 TTTAAGGTCAAAGAC CAATTCAAAATCT AAAGAAGA GGGTTTTGAATTG TTTTTTTGACGTTGA TERM 148 108893 - 108865 - g 91 -11 -4.1899 | gap 1 GGACGCCAGCGAAAA GCGCGCTTGGGCA GGGA TGCCC-ATCGCGC TGGCTCGTCAGCCCG TERM 149 108960 - 108985 + G 91 -16.2 -2.52543 | GCGCAAGCCGCAGGT GCAGGAGGGC CGGCTA GCCCTCCTGC TCGGTTGAGGCGACT YPA_0094 108789 - 109004 + | hypothetical protein YPA_0095 111792 - 109156 - | phosphoenolpyruvate carboxylase YPA_0096 113329 - 112166 - | acetylornithine deacetylase argC 113580 - 114584 + | N-acetyl-gamma-glutamyl-phosphate reductase YPA_0098 114750 - 115526 + | acetylglutamate kinase TERM 150 116561 - 116547 - g 90 -5.7 -5.24796 | overlap 116549 116551 GCCACAGAAGAAAAA TCCAG ATGCG CTGGA GCTCATCCGTGGTAA TERM 151 117020 - 117004 - g 70 -9.3 -3.5594 | opp_overlap 116995 116999 117015, overlap 117005 AAGCGAGTGGCCAAA GGCGGCG TTT CGCCGCA GCAGGTTGCATCGGC TERM 152 117019 - 117005 - g 77 -12.8 -2.73243 | opp_overlap 116995 116999 117015, overlap 117004 AGCGAGTGGCCAAAG GCGGCG TTT CGCCGC AGCAGGTTGCATCGG YPA_0099 115693 - 117066 + | argininosuccinate lyase TERM 153 117124 - 117091 - f 76 -10.1 -3.33261 | opp_overlap 117095 TTTTAATCTTGAGAA CGGGGCGGGCCGCTA ATTG CAGCGGCCCGCTTTG CATTAACAGTTACTA TERM 154 117095 - 117120 + F 100 -17.6 -3.75897 | opp_overlap 117091 AATCTTGAGAACGGG GCGGGCCGCT AATTGC AGCGGCCCGC TTTGCATTAACAGTT TERM 155 117716 - 117696 - g 70 -2 -4.92669 | opp_overlap 117715, overlap 117715 GAGATAAAAAAACAA TAATTTCA GTGAA TAAAATTA CAACTTGTATATTAT TERM 156 119459 - 119469 + G 71 -6.8 -4.25256 | GACGATCACTTTGCC GCGA AGG TCGC TTATTTTGATACCCG YPA_0100 117665 - 120157 + | putative TonB dependent receptor protein TERM 157 120252 - 120219 - f 100 -18.3 -4.26351 | overlap 120220 CAGCAAGTGAATAAA TCCCGCATCATTGAC GGCA GTCAATGATGCGGGT GAGAGAACACAGCTA TERM 158 120251 - 120220 - f 100 -21.8 -3.15087 | overlap 120219 AGCAAGTGAATAAAT CCCGCATCATTGAC GGCA GTCAATGATGCGGG TGAGAGAACACAGCT YPA_0101 120379 - 120996 + | hemophore HasA TERM 159 121027 - 121003 - f 100 -13.7 -5.06414 | opp_overlap 121001 121022 GCCGCTTAAGAAAAA CAGCCAGAAAA TAA CTTTCTGGCTG AGTCATTGATACCAC YPA_0102 121153 - 122970 + | ABC transporter protein YPA_0103 123046 - 124374 + | HlyD family secretion protein YPA_0104 124439 - 125242 + | hypothetical protein TERM 160 125339 - 125323 - T 100 -10.8 -4.7254 | opp_overlap 125323 ACGGGGGATTAAAAA CCGGGC GCCGT GCCCGG TTTGAACCGCCTGAG TERM 161 125323 - 125339 + T 89 -11.5 -3.53811 | opp_overlap 125323 ACGGGGGATTAAAAA CCGGGCG CCG TGCCCGG TTTGAACCGCCTGAG YPA_0105 126821 - 125358 - | dihydrolipoamide dehydrogenase TERM 162 126296 - 126278 - G 79 -7.4 -4.56597 | CGCCTGGGCCAAAAA CTGCCACA GAT TCTGGCAG ATCGTCCCAATTAAA TERM 163 126862 - 126845 - R 100 -11.3 -6.10295 | opp_overlap 126843 CTAACAGAAAAAAAA GGTAGGC CGGA GCCTACC AAGTTACTTCCTATT YPA_0106 127647 - 126916 - | putative peroxiredoxin/glutaredoxin family protein TERM 164 127208 - 127198 - G 70 -8.2 -3.65693 | opp_overlap 127198 127197 127194 ATCAGATACTTCAAA CGGG TCG CCCG GTTTGTTTGGCTCGA TERM 165 127212 - 127229 + g 84 -4.2 -5.24129 | overlap 127194 ACGGGTCGCCCGGTT TGTTTG GCTCGA CAAACA TTTTTTCTACCACGC YPA_0107 127794 - 128711 + | DNA-binding transcriptional regulator OxyR YPA_0108 130094 - 128694 - | soluble pyridine nucleotide transhydrogenase YPA_0109 130312 - 130947 + | DNA-binding transcriptional repressor FabR YPA_0110 130960 - 131367 + | hypothetical protein TERM 166 131453 - 131471 + T 100 -10.3 -4.83243 | opp_overlap 131453, overlap 131438 CGTCTTGCCAACTAA GGGCAAC ATGTC GTTGCCC TTTCTTTTATCTGCG TERM 167 131471 - 131453 - T 81 -11 -3.33696 | opp_overlap 131438 131453 CGTCTTGCCAACTAA GGGCAACA TGT CGTTGCCC TTTCTTTTATCTGCG TERM 168 131499 - 131509 + T 76 -6.8 -4.57569 | GCGGTATGAATTATT CGTC AGT GACG TTTTTCCAGCAGTAC YPA_0111 132604 - 131501 - | tRNA (uracil-5-)-methyltransferase btuB 133066 - 134961 + | vitamin B12/cobalamin outer membrane transporter TERM 169 135058 - 135032 - gf 100 -13.8 -3.14132 | opp_overlap 135029 135026 CTGTCTGTCTATCAA GAGATTCGGCAA CTG TTGCCGGATCTC CACTATATATATGCT TERM 170 135522 - 135534 + GF 72 -7.7 -3.76775 | opp_overlap 135521 135518 CGGATACTATAGTAT TGGGT TGC ACCCA TTTCCCTCTATTAAC YPA_0113 134906 - 135769 + | glutamate racemase TERM 171 138069 - 138032 - f 78 -5.7 -4.7629 | opp_overlap 138026 138032 138035, overlap 138035 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 172 138066 - 138035 - f 78 -7.4 -4.47888 | opp_overlap 138032 138026 138035, overlap 138032 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 173 139525 - 139507 - f 82 -10.3 -3.57798 | overlap 139520 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 174 139985 - 139959 - f 70 -9.4 -2.75844 | opp_overlap 139973 139981, overlap 139958 139961 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 175 140032 - 140021 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 176 141144 - 141154 + F 74 -6.8 -4.27316 | opp_overlap 141144 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 177 141660 - 141679 + F 100 -11.4 -5.80951 | opp_overlap 141660 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 178 141679 - 141660 - f 100 -9.2 -5.36441 | opp_overlap 141660 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 179 141757 - 141773 + F 73 -3.8 -5.02201 | TCGCTTTCTCTTTCC TCATTA TAATT TAATGA TTTTTATAATATTTT YPA_0114 142629 - 143585 + | putative periplasmic protein precursor TERM 180 143590 - 143614 + F 87 -8.4 -4.4195 | overlap 143593 TTGGTTATTGATTCA GATGGCGGGG CTTGC CCCCGCCTGC TTTTATCACCTGTAT TERM 181 143593 - 143611 + F 95 -13.1 -3.18044 | overlap 143590 GTTATTGATTCAGAT GGCGGGG CTTGC CCCCGCC TGCTTTTATCACCTG YPA_0115 143671 - 145161 + | putative sugar transport system ATP-binding protein YPA_0116 145173 - 146192 + | putative sugar transport system permease YPA_0117 146192 - 147184 + | inner membrane ABC transporter permease protein YjfF YPA_0118 148052 - 147171 - | transcriptional regulator HdfR TERM 182 148355 - 148341 - g 72 -10 -3.45087 | opp_overlap 148339 148341, overlap 148339 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA TERM 183 148341 - 148355 + G 72 -10 -3.38046 | opp_overlap 148341 148339, overlap 148339 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA YPA_0119 148087 - 148509 + | hypothetical protein TERM 184 148746 - 148761 + T 100 -11.8 -4.20516 | GTTAGTTGAGTATTA GGGGGC TTTG GCCCCC TTTGTTACATCAGGC YPA_0120 150289 - 148766 - | putative magnesium chelatase family protein TERM 185 150797 - 150820 + H 100 -13.8 -5.4505 | opp_overlap 150797 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTATTGGCACG TERM 186 150820 - 150797 - H 100 -13.8 -3.69069 | opp_overlap 150797 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTATTGGCACG TERM 187 151937 - 151911 - g 74 -11.6 -3.14132 | opp_overlap 151908 TCGTGGCGTGATGAA GTGATGGCGCTG AAA CAGCAACATCAC TGGCGTTATGACCAC YPA_0121 150912 - 152558 + | acetolactate synthase 2 catalytic subunit ilvM 152555 - 152812 + | acetolactate synthase 2 regulatory subunit TERM 188 153248 - 153234 - g 70 -10 -3.28924 | opp_overlap 153233 153234 TATCTGGGTGCAGAA GCCTTG GAG CAAGGC ATTGATGCTATGGTG YPA_0123 152835 - 153761 + | branched-chain amino acid aminotransferase YPA_0124 154072 - 155922 + | dihydroxy-acid dehydratase YPA_0125 155928 - 157472 + | threonine dehydratase YPA_0126 158067 - 157603 - | hypothetical protein YPA_0127 158608 - 158147 - | hypothetical protein YPA_0128 159263 - 158592 - | hypothetical protein TERM 189 159324 - 159337 + r 73 -5.3 -4.74453 | GCTTGAAATATTATG CAGAT TAAA ATCTG TTTTTAACTGTGTTG YPA_0129 159547 - 159356 - | hypothetical protein TERM 190 159835 - 159801 - H 70 -7.9 -3.64831 | opp_overlap 159798, overlap 159798 159802 CTAATAATGACATAA GCCGGATAAGCTTAT TATTG ACACGCTTATCCGGT TAACACCGCCTAAAT TERM 191 159834 - 159802 - H 81 -11.4 -2.78176 | opp_overlap 159798, overlap 159801 159798 TAATAATGACATAAG CCGGATAAGCTTAT TATTG ACACGCTTATCCGG TTAACACCGCCTAAA YPA_0130 160159 - 160368 + | hypothetical protein YPA_0131 161304 - 160423 - | DNA-binding transcriptional regulator IlvY TERM 192 160453 - 160467 + g 100 -11.4 -5.08824 | opp_overlap 160441 160453 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 193 160467 - 160453 - G 77 -11.4 -3.41982 | opp_overlap 160453, overlap 160441 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 194 161196 - 161164 - G 79 -7.6 -4.58395 | GTTATCGCGTAAAAA CAGGGGCTGGCCGA TAGTC TCTTCCAGCCGCTG GATCTGGCGGGAAAG TERM 195 161356 - 161381 + H 72 -9.9 -2.87529 | gap 1, opp_overlap 161354, overlap 161355 TGCATAAGAAATCGG GTG-TATTGCAG AAA CTGCAATATCAC ATTGTTAATATATCA YPA_0132 161590 - 163068 + | ketol-acid reductoisomerase TERM 196 163100 - 163122 + F 100 -9.8 -5.36441 | GTGATTTTATATTGA GCCTCCCTGT AAA AAAGGGGGGC TTTTTTATGTGCACC TERM 197 163184 - 163172 - f 75 -9.1 -3.58533 | GTAGAATTGCCGAAA CCCCA GGG TGGGG TAAGAATATTAGGTA YPA_0133 163645 - 165087 + | colicin TERM 198 165265 - 165255 - g 76 -6.8 -4.43909 | AGGCTAATAAAAGAA GCCA AGT TGGC TGAGGATGAAAAGGG YPA_0134 165087 - 165350 + | hypothetical protein TERM 199 165372 - 165400 + F 82 -3.2 -5.47964 | gap 1 ATATGCTTCAGTTAA CGTCCAGTCAATG AGTG TATTG-TTGGGCG TTTTTCTTATTTTAT YPA_0135 165603 - 165854 + | colicin YPA_0136 165856 - 166113 + | colicin immunity protein TERM 200 166133 - 166146 + T 78 -5.9 -4.81163 | opp_overlap 166128 166133, overlap 166128 AATATATAATCCAAA CCGCC TTCT GGTGG TTTTGTTAATATTTA TERM 201 166529 - 166550 + T 72 -9.5 -3.14564 | ATGCTGCCCGCAGGG TGAGTCTCA GGGG TGAGGCTCA TTAATCCCCAGGTGC YPA_0137 166724 - 166566 - | hypothetical protein YPA_0138 167566 - 166748 - | putative chaperone protein TERM 202 167215 - 167186 - GR 80 -11.5 -2.6062 | gap 1, opp_overlap 167189, overlap 167185 167183 167189 CCCACCAGATAAGAT CAACCGCAGGCTAC GCT GT-GCCTGAGGTTG TAACCGGAATACCGG YPA_0139 168911 - 167532 - | hypothetical protein TERM 203 167578 - 167596 + gr 71 -5.9 -4.33004 | GCATTCACTGCTCCG GCGGTCA CTGTT TGCCCGC TTATTTTGCTTAACT TERM 204 168151 - 168170 + gr 83 -10.7 -3.54129 | TCAGTACCCTCAATC GGGCCAG TAATTC CTGGCCC TTTAAACGCGATATA YPA_0140 171543 - 168916 - | putative outer membrane usher protein YPA_0141 172302 - 171571 - | putative fimbrial chaperone YPA_0142 172896 - 172366 - | putative fimbrial protein TERM 205 172977 - 172923 - R 82 -10.2 -3.71794 | opp_overlap 172932, overlap 172932 ATGTAATCATTGAAA TGGAGTTAATTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAATTTGATTGA GTGAATATATATTCC TERM 206 172968 - 172932 - R 100 -24.1 -3.11732 | opp_overlap 172932, overlap 172923 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 207 172932 - 172968 + r 100 -24.1 -3.93556 | opp_overlap 172932 172923 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 208 173018 - 173053 + r 100 -6.4 -6.06529 | gap 1, opp_overlap 173027, overlap 173019 GTTTTTATTATTCGT C-TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGATG TTTTTTTTCTGTGTA TERM 209 173019 - 173051 + r 100 -10.1 -4.65669 | opp_overlap 173027, overlap 173018 TTTTTATTATTCGTC TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGA TGTTTTTTTTCTGTG TERM 210 173732 - 173711 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_0143 174914 - 173706 - | transposase for the IS285 insertion element YPA_0144 175802 - 175011 - | hypothetical protein TERM 211 175999 - 176040 + r 71 -9.6 -3.06796 | gap 1, opp_overlap 176000 176002 176007, overlap 176007 GTATGACGAGTATAA ACATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGGA TTAGCTGCGGTACAA TERM 212 176039 - 176000 - R 100 -13.1 -4.00038 | gap 1, opp_overlap 175999 176007, overlap 176002 176007 TATGACGAGTATAAA CATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGG ATTAGCTGCGGTACA TERM 213 176037 - 176002 - R 100 -14.3 -3.58864 | gap 1, opp_overlap 175999 176007, overlap 176000 176007 TGACGAGTATAAACA TGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCA GGATTAGCTGCGGTA TERM 214 176032 - 176007 - R 77 -8.4 -4.05181 | gap 1, opp_overlap 175999 176007, overlap 176002 176000 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG TERM 215 176007 - 176032 + r 73 -8.4 -3.61268 | gap 1, opp_overlap 176007 176002 176000, overlap 175999 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG YPA_0145 176322 - 176041 - | peptidyl-prolyl cis-trans isomerase C TERM 216 177414 - 177429 + G 78 -2.6 -5.26316 | opp_overlap 177425 GCCAACAACCCACAT GTTTTT GAAA AGAAAC TTTTTTCTGAACTGA TERM 217 178392 - 178408 + G 79 -7.9 -4.47328 | TACGGCGAGTTGATT CGGCCAG AAC CTAGCCG TTTTCTGATGGAGTT TERM 218 178508 - 178491 - g 100 -11.3 -4.66609 | opp_overlap 178490 178489 GAGCGTATGCAAAAA GGCCAGA GTCA TCTGGCC AATCTTCGTGCTCAG YPA_0146 176526 - 178547 + | ATP-dependent DNA helicase Rep TERM 219 178627 - 178604 - T 84 -11.1 -3.69702 | overlap 178607 CAGTAGTGAAGATAA TAACGGGCA GTCTAT TGCCCGTTA GCCATGCATTAAGGC TERM 220 178624 - 178607 - T 77 -8.4 -3.97511 | overlap 178604 TAGTGAAGATAATAA CGGGCA GTCTAT TGCCCG TTAGCCATGCATTAA YPA_0147 179773 - 178715 - | guanosine-5'-triphosphate,3'-diphosphate diphosphatase YPA_0148 180210 - 179704 - | hypothetical protein YPA_0149 181500 - 180214 - | ATP-dependent RNA helicase RhlB TERM 221 180752 - 180770 + g 86 -3 -5.59655 | opp_overlap 180754, overlap 180753 180754 CATTCTTCTTCAATT AACGTCTG TAA CAGACGCA TTTTTTCTTCATTTG TERM 222 180768 - 180754 - G 70 -10 -3.33696 | opp_overlap 180754 180753 180752 TTCTTCTTCAATTAA CGTCTG TAA CAGACG CATTTTTTCTTCATT TERM 223 180811 - 180821 + g 78 -2.4 -5.25803 | CAGCTCTTCTTTGAT GCGG TGA CCGG TTTTTTGTAACGGTT YPA_0150 181619 - 181945 + | thioredoxin 1 TERM 224 182728 - 182750 + G 74 -6.9 -4.28369 | GTTGCCGGTAAGATT CGTCCGCCT AAAGA AGGCGAGCG TTATTTTGCATTGTT TERM 225 183013 - 183031 + G 74 -6.8 -4.35461 | overlap 183015 GCGACCAGCATTGCT TACAATCA CCC TGATTGTG TTTTGATGGTATTGC rho 182425 - 183684 + | transcription termination factor Rho TERM 226 183854 - 183836 - f 100 -11.7 -4.23892 | opp_overlap 183836 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTTTGGA TERM 227 183836 - 183854 + F 100 -11.7 -5.46698 | opp_overlap 183836 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTTTGGA YPA_0152 184234 - 185316 + | putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YPA_0153 185352 - 186413 + | lipopolysaccharide biosynthesis protein WzzE YPA_0154 186640 - 187824 + | UDP-N-acetylglucosamine 2-epimerase TERM 228 187868 - 187882 + G 74 -7 -4.42238 | overlap 187866 TGGGTATATTGGTCT GCCGAC CGC GGCGGC TTTTGCTTCGCGTAA wecC 187821 - 189083 + | UDP-N-acetyl-D-mannosamine dehydrogenase YPA_0156 189074 - 190147 + | dTDP-D-glucose-4,6-dehydratase TERM 229 190302 - 190261 - f 77 -10.9 -2.74144 | opp_overlap 190261, overlap 190260 190264 CCTGCACCTTGAAAT CTATAGTGTCTATCGTTGG GCGA CCTACGAGAGACACCAAAG TCGATTAATCATCGG TERM 230 190299 - 190264 - f 76 -11.2 -2.64803 | opp_overlap 190261, overlap 190261 190260 GCACCTTGAAATCTA TAGTGTCTATCGTTGG GCGA CCTACGAGAGACACCA AAGTCGATTAATCAT TERM 231 190823 - 190805 - gf 89 -10.2 -3.93061 | opp_overlap 190812 190814 190814 AGTCCAAAACTGAAA GCTGTCGC CGC GCGTCAGC AGGGCGCGACTGTTT YPA_0157 190391 - 191323 + | glucose-1-phosphate thymidylyltransferase TERM 232 191774 - 191795 + GF 72 -7.2 -3.9279 | overlap 191789 TTTATTGGTGCTCGA CCCTACGG ATCAAC CCGTCGGG TTTGTGACGTTGCGT YPA_0158 191274 - 192038 + | TDP-fucosamine acetyltransferase YPA_0159 192040 - 193170 + | TDP-4-oxo-6-deoxy-D-glucose transaminase TERM 233 193206 - 193235 + G 83 -13.7 -3.20227 | overlap 193205 CGATTTGGACTGCCT GCTCTACGCTAAT CAAG ATTGGCGTAGGGC TATTGGTGGTTAAAC YPA_0160 193172 - 194428 + | putative lipopolysaccharide biosynthesis protein TERM 234 194667 - 194692 + G 82 -7.5 -4.64861 | gap 1, overlap 194678 GAGGCGGTTATTGCC CGTGCACAGGCG GAT CGCA-GTGCGCG TTTCTTTTGGCACGG YPA_0161 194451 - 195536 + | 4-alpha-L-fucosyltransferase YPA_0162 195533 - 196897 + | putative entero common antigen polymerase TERM 235 197599 - 197613 + G 76 -7.2 -4.4078 | overlap 197595 CGCATTCGTCGTCAG CTTAAG CTG CTTAAG TTTGTTGGTTATTAT YPA_0163 196906 - 197646 + | putative UDP-N-acetyl-D-mannosaminuronic acid transferase TERM 236 198741 - 198753 + G 89 -10.5 -4.41348 | GCTTCGATAACCTGA CCGCC CAT GGCGG TTTCTTTGCCGGGGG YPA_0164 198170 - 199561 + | putative transport protein YifK TERM 237 200082 - 200055 - f 73 -7.2 -4.08706 | TTCGCACCACACAAA CATGTAGATATT TATT AATATTTACATG GACATAGGTCGAGAG TERM 238 200214 - 200228 + F 100 -12.8 -5.78622 | opp_overlap 200214 CAATTTCAGAAGAAA CCCCGC AAT GCGGGG TTTTTTTTCGCCTGA TERM 239 200228 - 200214 - f 100 -12.8 -4.33248 | opp_overlap 200214 CAATTTCAGAAGAAA CCCCGC AAT GCGGGG TTTTTTTTCGCCTGA TERM 240 200895 - 200916 + F 100 -10.2 -5.60993 | opp_overlap 200897 CCTGAAAATTTTAGA CACTTGCC CTTTTC GGCAAGTG TTTTTTTGTGCCCAG TERM 241 200936 - 200954 + F 100 -16 -3.07307 | opp_overlap 200936 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 242 200954 - 200936 - f 100 -16 -4.36914 | opp_overlap 200936 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 243 201051 - 201069 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0165 201073 - 202095 + | transposase for insertion sequence IS100 TERM 244 202176 - 202162 - g 77 -11.4 -3.3506 | overlap 202153 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0166 202095 - 202874 + | transposase/IS protein YPA_0167 202890 - 203036 + | hypothetical protein YPA_0168 203026 - 203484 + | transposase for the IS1541 insertion element TERM 245 203558 - 203590 + T 100 -11.3 -4.19704 | opp_overlap 203565, overlap 203562 203564 203565 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTGGGTGCGCTTC TERM 246 203562 - 203586 + T 100 -9.9 -4.68908 | opp_overlap 203565, overlap 203558 203564 203565 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTGGGTGCG TERM 247 203564 - 203584 + T 100 -12.5 -3.95475 | opp_overlap 203565, overlap 203562 203558 203565 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTGGGTG TERM 248 203583 - 203565 - T 100 -16 -4.8048 | opp_overlap 203564 203562 203558 203565 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGGT TERM 249 203565 - 203583 + T 100 -16 -2.962 | opp_overlap 203565, overlap 203564 203562 203558 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGGT YPA_0169 204897 - 203677 - | putative protoheme IX biogenesis protein YPA_0170 206024 - 204900 - | putative uroporphyrinogen III C-methyltransferase TERM 250 205272 - 205282 + g 74 -6.8 -4.28762 | opp_overlap 205272 GAAATCAGACATAAA GCTG TGC CAGC TTTTGCTCAGATTCT TERM 251 205282 - 205272 - G 71 -6.8 -4.19024 | opp_overlap 205272 GAAATCAGACATAAA GCTG TGC CAGC TTTTGCTCAGATTCT hemD 206804 - 206055 - | uroporphyrinogen-III synthase TERM 252 206288 - 206270 - G 77 -11 -3.43203 | CCACCAGAATATCAA CACCGGCA CGT TGCCAGTG AGCACTTTGTTCGCT hemC 207742 - 206801 - | porphobilinogen deaminase TERM 253 207870 - 207844 - R 78 -2.3 -5.4477 | overlap 207849 207860 AAATGCCTAAAAAAA CAACTGTTGCA ATGAA TACAACGATTG TAATGGATGCATGAC YPA_0173 208172 - 207963 - | hypothetical protein cyaA 208236 - 210788 + | adenylate cyclase TERM 254 210905 - 210931 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 210894, overlap 210900 210906 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 255 210906 - 210932 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 210894, overlap 210900 210905 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 256 210992 - 211012 + T 73 -2.5 -5.14965 | overlap 210993 GGTTTGTCAGCAGTC TGACACG TAAAAAT CGTGTCC TTTTTTGATCCAACT cyaY 211352 - 211032 - | frataxin-like protein YPA_0176 211504 - 211692 + | putative lipoprotein TERM 257 212301 - 212329 + G 73 -11.7 -2.64616 | overlap 212300 AACCTATATTTTACG CGCCGCAGAGCAT ACG GTGCTGTGTGGCG TGGTGTCGATGGGCA dapF 211876 - 212700 + | diaminopimelate epimerase YPA_0178 212765 - 213469 + | hypothetical protein xerC 213466 - 214377 + | site-specific tyrosine recombinase XerC TERM 258 214461 - 214486 + G 74 -4 -5.0133 | gap 1, overlap 214461 214462 214464 AATCGGCCAGTGATC G-CGCGGACTG AACAG CAGTCTGTGGC TTTTTTACAACAGTA YPA_0180 214377 - 215093 + | flavin mononucleotide phosphatase TERM 259 215262 - 215234 - g 74 -4.3 -4.86621 | opp_overlap 215246, overlap 215237 215239 AGCCTGAATGAAAAA CAACGTGACGCCG TGG CCGCGCCGCGCGG CAACTTGTTGGTACT TERM 260 215259 - 215237 - g 76 -6.8 -4.53777 | opp_overlap 215246, overlap 215234 215239 CTGAATGAAAAACAA CGTGACGCCG TGG CCGCGCCGCG CGGCAACTTGTTGGT TERM 261 215246 - 215266 + G 85 -12.5 -3.75024 | opp_overlap 215237 215234 215239 AAACAACGTGACGCC GTGGCCGCG CCG CGCGGCAAC TTGTTGGTACTGGCC TERM 262 215661 - 215651 - g 70 -8.2 -3.66995 | GGCAAAAAAGACGAA GGGC TGC GCCC GCAACATATTGAGAG uvrD 215195 - 217357 + | DNA-dependent helicase II TERM 263 217370 - 217396 + T 76 -9.4 -3.40971 | overlap 217369 TAATCTGATATTTGT GGTGGTTGCAGT GTC AGTGCGGCCACC TATCTATTTTTATTT YPA_0182 218157 - 217471 - | TetR family regulatory protein TERM 264 218824 - 218835 + G 73 -5.8 -4.46212 | TAATGCTATGGCTAT CGCT TTCG AGCG TTTTATGGTGAGCCG YPA_0183 218585 - 219802 + | hypothetical protein YPA_0184 219816 - 220658 + | hypothetical protein TERM 265 220742 - 220763 + F 100 -7.3 -5.85178 | opp_overlap 220742 GCAGGGTACGCAAAA CCGAAGTTG TTAC TGACTTCGG TTTTTTTTGGGTCTT TERM 266 221483 - 221497 + G 85 -3.5 -5.42259 | gap 1, overlap 221445 AGAGTTGGACGATAT CGAGGC TTCG GCC-CG TTTTTTTGAAGATGA YPA_0185 221307 - 222257 + | magnesium/nickel/cobalt transporter CorA TERM 267 222296 - 222340 + T 100 -8.8 -5.42862 | gap 2, opp_overlap 222296 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGG ACTAACC CCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT TERM 268 222340 - 222296 - T 100 -11.7 -5.5604 | gap 2, opp_overlap 222296 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGGA CTAAC CCCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT YPA_0186 223245 - 222355 - | hypothetical protein TERM 269 223019 - 223005 - G 83 -9.2 -4.41494 | overlap 223006 TACTGGCAATCAAAA CGGCGG TCA CCGCCA GTAACAATAGGCGCT TERM 270 223018 - 223006 - G 73 -10.5 -3.24414 | overlap 223005 ACTGGCAATCAAAAC GGCGG TCA CCGCC AGTAACAATAGGCGC YPA_0187 223802 - 223332 - | hypothetical protein YPA_0188 224024 - 224902 + | phospholipase A TERM 271 224926 - 224958 + F 95 -14.2 -2.86164 | gap 1, opp_overlap 224933 224935 GGCGTTATCACAGTT TCAGACACAGGCCGG TTAG CCGGCCTGTG-CAGA TCTAATAGTTGGGGG TERM 272 224952 - 224933 - f 100 -15 -2.89191 | opp_overlap 224926, overlap 224935 TCACAGTTTCAGACA CAGGCCGG TTAG CCGGCCTG TGCAGATCTAATAGT TERM 273 224950 - 224935 - f 86 -11.8 -2.99649 | opp_overlap 224926, overlap 224933 ACAGTTTCAGACACA GGCCGG TTAG CCGGCC TGTGCAGATCTAATA YPA_0189 224980 - 226812 + | ATP-dependent DNA helicase RecQ YPA_0190 226919 - 227539 + | threonine efflux system TERM 274 227535 - 227585 + T 77 -11.1 -2.79007 | opp_overlap 227552, overlap 227535 227574 AACTGATATTGTCCC GCTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGG CTCTTTATACTTTGC TERM 275 227535 - 227586 + T 84 -10.9 -3.66216 | gap 1, opp_overlap 227552, overlap 227535 227574 AACTGATATTGTCCC G-CTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGGC TCTTTATACTTTGCG rhtB 228210 - 227590 - | homoserine/homoserine lactone efflux protein TERM 276 229370 - 229383 + G 71 -5.2 -4.56775 | overlap 229361 GTGCCGAGGCGCTTA GCGC CATATT GCGC TTTTTCGCGCAACAT YPA_0192 228424 - 229419 + | lysophospholipase L2 YPA_0193 229286 - 230263 + | putative sugar phosphatase TERM 277 230301 - 230319 + F 95 -12.4 -3.28041 | TGATGCTGTGGAGTA GGGTGGCC TTT GGTCACCC TTCCTCCTTGGCGTT TERM 278 230723 - 230712 - g 73 -3 -5.04908 | AAAATAAAAAAATAA CAAT AAAT ATTG CTGAGAAGAAATTTA TERM 279 231725 - 231706 - g 87 -4.4 -5.41143 | gap 1 CATGGGTGAAAAAAA TCACTATCA GAA TG-TAGTGA GTCACGTTGAATAAT YPA_0194 230540 - 231739 + | hypothetical protein glpQ 232928 - 231813 - | glycerophosphodiester phosphodiesterase glpA 233553 - 235208 + | sn-glycerol-3-phosphate dehydrogenase subunit A YPA_0197 235198 - 236472 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpC 236469 - 237764 + | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 280 237915 - 237891 - T 100 -13.6 -4.72631 | opp_overlap 237895 237912 AGTAAGTCAATAAAA CAGAGCGCGA GTGAA CCGCGCTCTG CTGGGACAGATTATT YPA_0199 238453 - 237926 - | hypothetical protein YPA_0200 239251 - 238583 - | hypothetical protein YPA_0201 239394 - 239789 + | cell developmental protein SirA zntA 242256 - 239908 - | zinc/cadmium/mercury/lead-transporting ATPase YPA_0203 243284 - 242670 - | hypothetical protein YPA_0204 243590 - 243910 + | hypothetical protein TERM 281 244215 - 244203 - g 80 -3.3 -5.252 | TATTGGCAGAAAAAA CAGCA GGA TGCAG AAAATGATCGCGCAC YPA_0205 244122 - 244541 + | hypothetical protein YPA_0206 245000 - 244728 - | hypothetical protein TERM 282 244970 - 244959 - G 78 -2.2 -5.32882 | overlap 244960 244962 CAGCAGTATAAAAAA CCAG ACGC CTAG CATCAGTAACCGGCC YPA_0207 245652 - 244990 - | 16S rRNA m(2)G966-methyltransferase TERM 283 246015 - 245997 - g 85 -12.4 -3.70773 | overlap 246008 CGTCAGAGTGAAGAA CCAGCAGC AGA GCCGCTGG CGACTGAAAAAGAAG TERM 284 247295 - 247275 - g 80 -3.1 -5.26875 | opp_overlap 247289, overlap 247276 CGGGTAATGAAAAAA CTGGACGGC GAC GCCCCCCAT GAGGTTATGCTGACA YPA_0208 245934 - 247550 + | cell division protein YPA_0209 247556 - 248224 + | cell division protein FtsE ftsX 248214 - 249167 + | cell division protein FtsX TERM 285 249916 - 249902 - g 71 -7.8 -4.09739 | opp_overlap 249907, overlap 249907 TCAACCTGCGTAAAA CCAAGC AGC GCCTGG GCTGGTTTAATCAGG YPA_0211 249478 - 250335 + | RNA polymerase factor sigma-32 TERM 286 250398 - 250378 - f 93 -11.2 -4.11183 | opp_overlap 250378 CGGCACGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTGTGCCCAG TERM 287 250378 - 250398 + F 100 -11.2 -4.34402 | opp_overlap 250378 CGGCACGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTGTGCCCAG TERM 288 250436 - 250418 - f 100 -16 -4.36914 | opp_overlap 250418 GCTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 289 250418 - 250436 + F 100 -16 -3.07307 | opp_overlap 250418 GCTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0212 250549 - 251007 + | transposase for the IS1541 insertion element TERM 290 251081 - 251113 + T 100 -11.3 -5.41143 | opp_overlap 251088, overlap 251087 251088 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTTTGGCAGATA TERM 291 251087 - 251107 + T 100 -12.5 -4.21073 | opp_overlap 251088, overlap 251081 251088 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTTTGG TERM 292 251088 - 251106 + T 100 -16 -3.10203 | opp_overlap 251088, overlap 251087 251081 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTTG TERM 293 251106 - 251088 - T 100 -16 -4.8048 | opp_overlap 251088 251087 251081 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTTG YPA_0213 251690 - 251253 - | putative acetyltransferase TERM 294 251547 - 251525 - G 70 -4.8 -4.73388 | opp_overlap 251546 AACGTGCAGCAAAAA GTGGTCTACC CTC AGTAATCCAC TGTTGCCAGGCAGCA TERM 295 252434 - 252415 - g 80 -12.2 -3.39717 | ATTTATGAAGATGAA GGGGTGAT AATG ATCACCCC TGCTGCTACAAACGC TERM 296 253072 - 253061 - g 74 -7.2 -4.17023 | overlap 253069 253070 CTAACGATCTGAAAA CCGG CAAA CCGG TTGAGACCGTGATGG YPA_0214 252067 - 253182 + | branched-chain amino acid-binding protein TERM 297 253272 - 253292 + T 100 -10.4 -4.70659 | CTTCTATCAACTGCA TCCCCTCG TATTC CGGGGGGA TTTTTCCCTCTACAG YPA_0215 254162 - 253383 - | transposase/IS protein TERM 298 254081 - 254095 + g 77 -11.4 -3.3506 | overlap 254094 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0216 255184 - 254162 - | transposase for insertion sequence IS100 TERM 299 255206 - 255188 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_0217 255322 - 256248 + | branched-chain amino acid transporter permease subunit LivH TERM 300 257201 - 257180 - g 73 -8.7 -3.71672 | CCCGACCAAAATTAA GCTGACGGC ATTT ACCATCAGC GCGGCCTTTGCAGGT livM 256245 - 257531 + | leucine/isoleucine/valine transporter permease subunit livG 257528 - 258295 + | leucine/isoleucine/valine transporter ATP-binding subunit livF 258340 - 259041 + | leucine/isoleucine/valine transporter ATP-binding subunit YPA_0221 259269 - 259730 + | hypothetical protein YPA_0222 260951 - 259845 - | hypothetical protein YPA_0223 261701 - 261183 - | hypothetical protein TERM 301 261240 - 261254 + g 79 -9.2 -4.13728 | TTTCCCCGCAGTATT GTCCCC AGC GGGGGC TTTTGCGGATATCTG YPA_0224 262410 - 261763 - | hypothetical protein YPA_0225 263068 - 262382 - | hypothetical protein TERM 302 262929 - 262915 - GR 71 -7 -4.07868 | opp_overlap 262915 262913 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGCA TERM 303 262915 - 262929 + gr 72 -9.2 -3.22475 | opp_overlap 262915, overlap 262913 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGCA YPA_0226 265419 - 263086 - | hypothetical protein TERM 304 264289 - 264323 + g 87 -4.8 -5.49809 | overlap 264291 TTGTACGCTTTCTAT CACCCTGCTGCGTCCA AAC TGGACTAAACGGGGCG TTTTTTTACCCTTTG TERM 305 265620 - 265648 + r 71 -9 -3.4052 | gap 1, opp_overlap 265620 265622 265624 AGTATGACAGATATA TACAGCCA-GGAG ATAA TTCCATGGCTGTA TTCATTAAATTAACA YPA_0227 266294 - 265686 - | hypothetical protein TERM 306 266350 - 266363 + H 70 -5.3 -4.55689 | TAACGTTATTTCAAG TGGTA ATTA TACCA TTTTGTCTGAATGAT TERM 307 267478 - 267467 - g 100 -5.8 -5.5353 | opp_overlap 267467 267465 GATATGAATAAAAAA GGTG ATTT CACC TATTTTGGCCGTAAA YPA_0228 266732 - 268051 + | glycerol-3-phosphate transporter periplasmic binding protein YPA_0229 268349 - 269236 + | glycerol-3-phosphate transporter permease TERM 308 269461 - 269471 + G 76 -5.4 -4.81863 | CCTTTCGGGTTGATG CTGT TGA ACAG TTTTGTTATGGCTTT TERM 309 270010 - 270025 + G 71 -6.8 -4.25256 | ATTTTGACTTTAATT CCACCG GTCG TGGTGG TTCTTTTGATGCAGC YPA_0230 269233 - 270078 + | glycerol-3-phosphate transporter membrane protein TERM 310 270741 - 270715 - g 74 -7.9 -4.2461 | opp_overlap 270738 ATTGTGATGAACAAA GGGGTTGCCGA GCAAA TCGGTACCCCC AGCGAGGTTTATAAA TERM 311 271028 - 271050 + G 70 -9.8 -3.32844 | CGCACGGCCTGTGGG GCGGGCAAAG TAT CATTGCTCGC TTATCCCATGAAGAA TERM 312 271077 - 271067 - g 71 -6.8 -4.25056 | opp_overlap 271066, overlap 271068 TATCCCATGAAGAAA TGCC AGT GGCA GGCAGTACATTGCAT ugpC 270085 - 271158 + | glycerol-3-phosphate transporter ATP-binding subunit ugpQ 271155 - 271904 + | cytoplasmic glycerophosphodiester phosphodiesterase TERM 313 271980 - 271946 - f 85 -5.7 -5.18726 | CCGCCATAATAAAAA CAGGTCAGCCATT CTTACATTT ACGGGCTGACCTG GCCCGGCCTGACAGG YPA_0233 272005 - 272931 + | hypothetical protein TERM 314 273426 - 273438 + GT 70 -3.3 -4.89729 | overlap 273416 GATGCGTGTCGGGCT GGCCG CAC TGGTC TTTTTGCCTTTTCTG YPA_0235 275053 - 274100 - | LysR family transcriptional regulator YPA_0234 273280 - 274212 + | hypothetical protein YPA_0236 275159 - 277435 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 315 277470 - 277485 + T 100 -11.8 -5.52096 | GTAGTGGGGCTTTTG GGGCGC TTTC GCGCCC TTTTTTATTGCGTTT YPA_0237 278362 - 277490 - | putative carboxymethylenebutenolidase TERM 316 277744 - 277729 - G 70 -10.4 -2.88544 | CTTTACCTCCATATA GCCCCA ACAC TGGGGC GCAGAGATCGATAGC TERM 317 277978 - 277966 - G 76 -7.7 -4.29738 | opp_overlap 277965 CGAGATCCACCAAAA CCTGA CGA TCAGG GACTTTTTTTACCAG YPA_0238 278790 - 279551 + | uridine phosphorylase TERM 318 279585 - 279604 + F 100 -11.4 -4.36862 | TAGAGGGTTTGTTCT CGGGTCAG TTTA CTGGCCCG TTCTTTATTTCATCT YPA_0239 279672 - 280502 + | hypothetical protein TERM 319 280918 - 280937 + G 95 -6.4 -5.5112 | overlap 280920 GTATCCTTACGATCT GCTACCGT TTAT ACGGTATC TTTTTTGTTCGTAAG TERM 320 280920 - 280935 + G 76 -7.6 -4.39002 | overlap 280918 ATCCTTACGATCTGC TACCGT TTAT ACGGTA TCTTTTTTGTTCGTA TERM 321 281689 - 281702 + G 76 -8.1 -4.15222 | CTGAAATTCAATTCC CTGCG GTTA CGCAG TTTATTCACGGCGGT TERM 322 282405 - 282421 + G 77 -12.3 -3.10895 | GCCACGATTATCCTG CGCTTGG CGA CCAAGCG TGTGTATATGTTGAC YPA_0240 280866 - 282677 + | putative carbon starvation protein TERM 323 282706 - 282733 + F 100 -13.6 -5.5074 | opp_overlap 282710 TTGTGCTAATTTGTT TAAACGGCTGGA ATCT TCTAGCCGTTTA TTTTTTGTTAAGTTA TERM 324 283289 - 283302 + G 74 -2.3 -5.07107 | overlap 283299 TCTTCGAGCGTTGGG GGTTC TTTG GGGCC TTTTTTGGCCGTTTC YPA_0241 282949 - 283479 + | hypothetical protein YPA_0242 283687 - 285192 + | putative DNA recombination protein TERM 325 285201 - 285225 + F 72 -7.7 -3.75015 | AGAGTAATTTAATTG GCACCGCAACC AGG GGGTGTGGGGC TTTCATCGGAGTTCT ubiE 285284 - 286039 + | ubiquinone/menaquinone biosynthesis methyltransferase YPA_0244 286053 - 286703 + | hypothetical protein TERM 326 288072 - 288059 - g 71 -5.2 -4.48449 | overlap 288055 288053 GCATTAAAAGAGAAA GCCC CTTTCT GGGC TGAAAAATTCCCTGA ubiB 286703 - 288334 + | putative ubiquinone biosynthesis protein UbiB YPA_0246 288514 - 288780 + | Sec-independent protein translocase protein TatA YPA_0247 288784 - 289446 + | Sec-independent protein translocase protein TatB TERM 327 289522 - 289536 + G 81 -6.4 -4.98436 | opp_overlap 289522 289523, overlap 289523 TACTGAATTGTATAA TCACCA TTT TGGTGG TTTTTCTGGTATTGG YPA_0248 289449 - 290225 + | TatABCE protein translocation system subunit TERM 328 290246 - 290261 + F 100 -11.8 -4.45168 | TGCGTTGATATTTAG CCGCCC TTCT GGGCGG TTTCTGTTTTGGAAC YPA_0249 290281 - 290820 + | hypothetical protein TERM 329 290825 - 290843 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0250 290847 - 291869 + | transposase for insertion sequence IS100 TERM 330 291950 - 291936 - g 77 -11.4 -3.3506 | overlap 291927 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0251 291869 - 292648 + | transposase/IS protein YPA_0252 292901 - 293485 + | hypothetical protein YPA_0253 294087 - 293602 - | ribonuclease activity regulator protein RraA YPA_0254 295158 - 294229 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 331 295104 - 295127 + g 83 -13.2 -3.27029 | overlap 295098 295103 295102 GTGGTCGTAGGCTTT CCAGCCAAGC CTGG GTTTGGCTGG TGTTGATTGATAGGC TERM 332 295275 - 295253 - R 70 -2.8 -5.06451 | TATCATGTCAAAAAA TTATGACGTT ATC AAAATCATAA TGCGATAAGAATCAT TERM 333 295334 - 295304 - R 100 -15.4 -4.9934 | overlap 295307 ATAATACGATAAAAA CAAGAGTGGGAGGC GAT GCCTCCCACTCGGG ATACTCCATACTGGA TERM 334 295331 - 295307 - R 100 -20.1 -4.57057 | overlap 295304 ATACGATAAAAACAA GAGTGGGAGGC GAT GCCTCCCACTC GGGATACTCCATACT hslU 296713 - 295382 - | ATP-dependent protease ATP-binding subunit YPA_0256 297308 - 296784 - | ATP-dependent protease peptidase subunit YPA_0257 298154 - 297408 - | cell division protein FtsN YPA_0258 299347 - 298319 - | DNA-binding transcriptional regulator CytR TERM 335 299616 - 299569 - R 78 -5.6 -4.85918 | GATCAGACAATAAAA GATCGGGCGAACCCCTTT TTCTTGACGCTG CAAGGGGTTCGCCATATC CCCTCACCTGAATCA YPA_0259 301898 - 299700 - | primosome assembly protein PriA TERM 336 302040 - 302073 + H 90 -11.2 -3.94409 | opp_overlap 302046, overlap 302043 GATATCAAATCCTGT TAACCATCGTTGCT TATTTT ATCAACGATGGTTA TTTATCAATCGTGTG TERM 337 302043 - 302070 + H 79 -8.5 -4.09519 | opp_overlap 302046, overlap 302040 ATCAAATCCTGTTAA CCATCGTTGCT TATTTT ATCAACGATGG TTATTTATCAATCGT rpmE 302141 - 302356 + | 50S ribosomal protein L31 TERM 338 302378 - 302392 + T 100 -12.8 -5.45652 | opp_overlap 302378 CCCGTCAGATAAAAA GGCGCC TTG GGCGCC TTTTTTGTTGCCACT TERM 339 302392 - 302378 - T 100 -12.8 -4.96848 | opp_overlap 302378 CCCGTCAGATAAAAA GGCGCC TTG GGCGCC TTTTTTGTTGCCACT TERM 340 302772 - 302744 - T 100 -7.5 -5.63517 | opp_overlap 302744 TGCGTAAAGAAAAAA TGGCTAAGCACAA TTG TTATGCTGAACCA TTTTTTGTAGTGAAA TERM 341 302744 - 302772 + T 79 -3.1 -5.31275 | opp_overlap 302744 TGCGTAAAGAAAAAA TGGCTAAGCACAA TTG TTATGCTGAACCA TTTTTTGTAGTGAAA TERM 342 302860 - 302825 - T 74 -4.8 -4.74801 | overlap 302808 302807 302827 302831 TAACTGCAGTAAAAA TATTAACTGCAGTGAA AAGG TTAACTGCAGTGAAAA GGTTAATTGTAGCGA TERM 343 302858 - 302827 - T 72 -7.4 -3.98658 | overlap 302808 302807 302825 302831 ACTGCAGTAAAAATA TTAACTGCAGTGAA AAGG TTAACTGCAGTGAA AAGGTTAATTGTAGC TERM 344 302854 - 302831 - T 73 -8.2 -3.62531 | overlap 302808 302807 302827 302825 CAGTAAAAATATTAA CTGCAGTGAA AAGG TTAACTGCAG TGAAAAGGTTAATTG YPA_0261 303348 - 302881 - | hypothetical protein YPA_0262 304002 - 303685 - | transcriptional repressor protein MetJ YPA_0263 304380 - 305369 + | hypothetical protein YPA_0264 305396 - 305539 + | cystathionine gamma-synthase TERM 345 307077 - 307095 + G 84 -10.3 -4.08767 | TTACGATGGTTTGGA TGCCAGC CGGAC GCTGGCA TTTTACAACGATGAA metL 305542 - 307977 + | bifunctional aspartate kinase II/homoserine dehydrogenase II metF 308210 - 309094 + | 5,10-methylenetetrahydrofolate reductase TERM 346 309291 - 309309 + T 77 -11 -2.73735 | overlap 309284 309301 309303 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPA_0267 310057 - 309272 - | transposase for insertion sequence IS1661 YPA_0268 310791 - 310111 - | insertion element IS1661 DNA-binding protein TERM 347 310627 - 310681 + g 83 -13.8 -3.30771 | gap 1, opp_overlap 310631 310636 310657 AAAAGGGTGTTTCAT TGAACCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAGTGCA TTATGACCCCTCTGA TERM 348 310677 - 310631 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 310627, overlap 310636 310657 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCATTATGACCCCT TERM 349 310672 - 310636 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 310627, overlap 310631 310657 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCATTATGA TERM 350 310667 - 310657 - G 76 -5.4 -4.88736 | opp_overlap 310627, overlap 310636 310631 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAT TERM 351 311609 - 311588 - g 71 -5.1 -4.44211 | gap 1, overlap 311589 311590 TTTAATACAAAAGAA CGCGTCAACG TCA CGGTGACG-G AAAAGGTCACGCTAA YPA_0269 310898 - 312322 + | Sodium:galactoside symporter family protein TERM 352 312513 - 312468 - T 82 -7.9 -4.55697 | opp_overlap 312468 312473, overlap 312473 ATTGCCATAAACAAA TTATAGGGGC-TTGCGCAA TGTCTTAATT TTGCGCAAAGCCCCT-TAA TTATTGATGGGTGAT TERM 353 312468 - 312513 + T 80 -10 -3.73914 | opp_overlap 312468 312473, overlap 312473 ATTGCCATAAACAAA TTATAGGGGC-TTGCGCAATGT CTTA ATTTTGCGCAAAGCCCCT-TAA TTATTGATGGGTGAT TERM 354 312509 - 312473 - T 77 -10.3 -3.16414 | gap 1, opp_overlap 312468 312473, overlap 312468 CATAAACAAATTATA GGGGC-TTGCGCAA TGTCTTAATT TTGCGCAAAGCCCC TTAATTATTGATGGG TERM 355 312473 - 312509 + T 100 -12.4 -3.56142 | gap 1, opp_overlap 312473 312468, overlap 312468 CATAAACAAATTATA GGGGC-TTGCGCAATGT CTTA ATTTTGCGCAAAGCCCC TTAATTATTGATGGG YPA_0270 314761 - 312581 - | putative ferric siderophore receptor YPA_0271 316161 - 314833 - | putative siderophore biosynthesis protein IucD TERM 356 315284 - 315306 + g 70 -3.3 -4.8048 | gap 1, overlap 315276 TTGGTCAGTGAGCGG CTG-GGGAGC AGGC GCGCCCACGG TTTTTCATGTAACAC YPA_0272 317906 - 316158 - | putative siderophore biosynthesis protein IucC YPA_0273 318853 - 317903 - | putative siderophore biosynthesis protein IucB YPA_0274 319907 - 318837 - | siderophore biosynthesis protein, IucA familly TERM 357 319672 - 319694 + g 71 -11.3 -2.78032 | opp_overlap 319670 319669, overlap 319671 319670 GTTTGAGCCAAACGT GCCAAGCGC ATACC GCGTTTGGC CTCTTTTACCGACAG YPA_0275 320608 - 320000 - | hypothetical protein TERM 358 321520 - 321537 + G 71 -6.3 -4.42238 | gap 1, overlap 321509 321523 ATTCGGCCACCACGG TGAGCCAC CAC GTGGC-CA TTTTGCTTAGCATAG YPA_0276 320748 - 321971 + | hypothetical protein YPA_0277 323094 - 322261 - | hypothetical protein TERM 359 323297 - 323258 - R 100 -15.4 -5.93809 | opp_overlap 323232 323265 TTTTTATAAAAAAAA TGATAAATTTCATGCTTA ATTA TTAGCATGAAATTTATCA TAGGGAAGGGACAAT TERM 360 323265 - 323290 + r 74 -7.7 -3.96148 | opp_overlap 323258 AAAAAAAATGATAAA TTTCATGCTTA ATTA TTAGCATGAAA TTTATCATAGGGAAG YPA_0278 324847 - 323471 - | hypothetical protein TERM 361 324564 - 324582 + g 73 -11 -2.88579 | opp_overlap 324562 324559 324564 324566, overlap 324566 AGCGCTATAATCATA TAGCGTCC TGA GGGCGCTA TATCTGCCGGATTAG TERM 362 325177 - 325233 + H 70 -3.9 -4.78157 | gap 1, opp_overlap 325183, overlap 325183 GGAGCTAGACATTAT ATTAAATGCTACAGAAGTTCTACTTG CAGAAA CAGGT-GCACTTCTGTAGCATTTTCC TTTATTATTTTTGGT TERM 363 325183 - 325227 + H 100 -11.7 -4.71708 | gap 1, opp_overlap 325183, overlap 325177 AGACATTATATTAAA TGCTACAGAAGTTCTACTTG CAGAAA CAGGT-GCACTTCTGTAGCA TTTTCCTTTATTATT TERM 364 325227 - 325183 - H 86 -10.2 -3.88062 | gap 1, opp_overlap 325177 325183 AGACATTATATTAAA TGCTACAGAAGTTCTACTTGC AGAA ACAGGT-GCACTTCTGTAGCA TTTTCCTTTATTATT TERM 365 325383 - 325363 - H 74 -9.8 -3.15544 | opp_overlap 325354 325349 325363 CGGTAGTTGTACTAA GGTGCAAT TTCCT ATTGCACC TTAGTACAGTAAATG TERM 366 325363 - 325383 + H 74 -9.8 -3.16881 | opp_overlap 325363, overlap 325354 325349 CGGTAGTTGTACTAA GGTGCAAT TTCCT ATTGCACC TTAGTACAGTAAATG YPA_0279 325409 - 326152 + | quorum-sensing transcriptional regulator YPA_0280 326783 - 326133 - | N-acylhomoserine lactone synthase YspI TERM 367 326690 - 326706 + g 70 -2.2 -4.95957 | opp_overlap 326690 TCACCTCCCAGTTAA GACGAT CCTTA AACGTC TTTTTCCTTAATTTA YPA_0281 327958 - 328608 + | hypothetical protein YPA_0282 329059 - 329454 + | putative lipoprotein YPA_0283 329522 - 329785 + | insertion element protein TERM 368 329993 - 329983 - f 70 -2.6 -4.96773 | GGAATCAAAAATAAA TTTA TGT TAAA ACTAATTATTTTTAT TERM 369 330102 - 330113 + F 88 -3 -5.84011 | CAGAAGCGTTGGGAT GATA TTTA TATC TTTTTATTTTTTATT YPA_0284 331730 - 332230 + | hypothetical protein TERM 370 332318 - 332296 - g 71 -6.3 -4.34402 | gap 1, overlap 332297 GTCTGTACAGGAAAA CCGTGCGCAG GGTA CTGCG-ACGA CCGTATTAAAGAATA YPA_0285 332279 - 333817 + | hypothetical protein YPA_0286 333829 - 335181 + | hypothetical protein TERM 371 335468 - 335485 + G 74 -2.6 -5.09225 | overlap 335470 335471 CTTCGTGTGGTGCCA TTCGCC CTTACA GGCGCA TTTTTTCAATACCCT YPA_0287 335178 - 335864 + | hypothetical protein TERM 372 336951 - 336981 + G 77 -10.4 -3.61398 | GGGTGGCCTTTGATA TCCGTCAGTACCAC AGC GTGGCGATGACGGA TTATTCCCCGAAAGC YPA_0288 335864 - 337600 + | OmpA family membrane protein YPA_0289 337604 - 338095 + | hypothetical protein TERM 373 338179 - 338198 + F 100 -11.4 -5.69068 | opp_overlap 338182 AGGGTAACCCCGCAA GTAGGCGG TTCG CCGCCTGC TTTTTTGTGTTTTTA YPA_0290 338513 - 341161 + | Clp ATPase TERM 374 342330 - 342311 - g 70 -2.8 -4.8143 | gap 1, overlap 342303 342312 342313 TCAACAAGCCAAAAA TGGCCGGCA CCT TGCCCGC-A CGGGTCACCAGCACC YPA_0291 341158 - 343506 + | hypothetical protein TERM 375 343581 - 343561 - f 100 -15.5 -3.18511 | opp_overlap 343565 GAGATAGAGATGCAA CCCAGTCAG ATG CTGACTGGG TTGACGCGATGATGC YPA_0292 343590 - 345743 + | hypothetical protein TERM 376 345834 - 345814 - f 73 -9.7 -3.03348 | opp_overlap 345818, overlap 345813 345817 GGGAAGAGCATAAAT CAACCCCTC TGG GAGAGGCTG CTATAAATATTCCTG TERM 377 345831 - 345817 - f 70 -7.8 -3.64902 | opp_overlap 345818, overlap 345814 345813 AAGAGCATAAATCAA CCCCTC TGG GAGAGG CTGCTATAAATATTC TERM 378 345952 - 345937 - f 74 -7.6 -3.93583 | TAAGCTATGCAGAAA TTCCTC AAGT GAGGAA AGTGAGGAAAGTGAG YPA_0293 346640 - 346915 + | insertion sequence protein YPA_0295 346971 - 347228 + | putative transposase TERM 379 347481 - 347455 - f 71 -3.2 -5.01042 | opp_overlap 347471 AATTTAAAGGAAAAA TCATTACACAAA CTA TTTATATAATAA TTTTTTGTATAAGGA TERM 380 347471 - 347481 + F 76 -2.6 -5.36441 | opp_overlap 347455 CATTACACAAACTAT TTAT ATA ATAA TTTTTTGTATAAGGA YPA_0296 347836 - 348471 + | hypothetical protein TERM 381 349264 - 349254 - g 74 -6.8 -4.31329 | TGAAAAACTGGAAAA CACC GAT GGTG CAGATTACGAATACA TERM 382 350658 - 350645 - g 72 -3.9 -4.75288 | GTACAGTAAAAGAAA TTGAT AAAG ATCAA GCAGAAAGTGCCGAT YPA_0297 348487 - 350784 + | putative kinase TERM 383 350796 - 350815 + G 73 -3 -5.00616 | TTAAAAAATTGACAT TGAAATAT TTTT ATATTTTA TTTTTTACACCCCAC TERM 384 350913 - 350902 - g 74 -4.4 -4.84033 | AGACAAAAATGAAAA TGCA ATTT TGCA TGTAAAAAAAAACCA YPA_0298 350771 - 351538 + | hypothetical protein YPA_0299 351634 - 351909 + | insertion sequence protein YPA_0300 351963 - 352331 + | insertion sequence protein TERM 385 352584 - 352558 - f 71 -3.2 -5.01042 | opp_overlap 352574 AATTTAAAGGAAAAA TCATTACACAAA CTA TTTATATAATAA TTTTTTGTATAAGGA TERM 386 352574 - 352584 + F 76 -2.6 -5.36441 | opp_overlap 352558 CATTACACAAACTAT TTAT ATA ATAA TTTTTTGTATAAGGA YPA_0301 352939 - 353574 + | hypothetical protein YPA_0302 353658 - 353906 + | integrase TERM 387 354037 - 354011 - f 81 -7.2 -4.71776 | opp_overlap 354011 TAAGACGCAAGAAAA CCGAAGTTTGTC ATC GACATCCTCCGG TTTCTTCGTCCCGTA TERM 388 354192 - 354208 + F 76 -10.9 -2.62616 | opp_overlap 354191 354189 354186 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA YPA_0303 354731 - 354883 + | hypothetical protein TERM 389 355278 - 355307 + GF 76 -4.3 -5.00884 | gap 1 ATGAATAACTCGACC TTTGCTTGCCCTGG CCA TCAGGG-GGGCGAA TTTTTTCGCAAGCAT TERM 390 355327 - 355337 + GF 74 -2.4 -5.1925 | TTCGCAAGCATCCTG CAGG ACG CCAG TTTTTTGAATTCTAC YPA_0304 354738 - 357065 + | ornithine decarboxylase TERM 391 357090 - 357119 + F 83 -11.5 -3.05521 | TCTCCGCTCCATCAG CCGAGGCCATT TTTTAATT GATGGCCTCGG TATTAAACATCTCAT YPA_0305 357621 - 358580 + | putative sugar ABC transporter periplasmic binding protein YPA_0306 358626 - 360125 + | putative sugar transport ATP-binding protein TERM 392 360240 - 360251 + G 84 -4.4 -5.35721 | TCCTGCTAGACAACT CAAC GACC GTTG TTTTTATTGTTATGT YPA_0307 360206 - 361141 + | putative sugar transport system permease protein YPA_0308 363368 - 361224 - | putative hydroxamate-type ferrisiderophore receptor TERM 393 362514 - 362549 + g 79 -11.1 -3.57792 | opp_overlap 362524 GGTGGCGTTATAGCT CTCGTCGAAACGGCG ATCACG CGGCGTGTCGACGGG TTTGCCAGTGCGTGG YPA_0309 364461 - 363361 - | hypothetical protein mltC 365819 - 364743 - | murein transglycosylase C TERM 394 365311 - 365335 + g 100 -9.4 -5.18371 | gap 1, opp_overlap 365311 ACGAACGAGATCACA TGCAAAC-CGG AAGT CCGTGTTTGCA TTTTGTTTTGTAGCA TERM 395 365998 - 365974 - R 83 -9.3 -4.015 | gap 1, opp_overlap 365971 365967 365977, overlap 365977 CTATTTAGGAAATAA CAGCGGGGCC TTAATT GGCCCCG-TG TGGTTACTTACTCGG TERM 396 365977 - 365996 + r 86 -12.1 -2.97613 | opp_overlap 365974 365977, overlap 365971 365967 TTTAGGAAATAACAG CGGGGCC TTAATT GGCCCCG TGTGGTTACTTACTC TERM 397 365996 - 365977 - R 83 -12.1 -2.75069 | opp_overlap 365977 365971 365967, overlap 365974 TTTAGGAAATAACAG CGGGGCC TTAATT GGCCCCG TGTGGTTACTTACTC YPA_0311 366274 - 366002 - | hypothetical protein YPA_0312 367570 - 366452 - | adenine DNA glycosylase trmB 367905 - 368624 + | tRNA (guanine-N(7))-methyltransferase YPA_0314 368624 - 368950 + | hypothetical protein TERM 398 368982 - 368999 + F 100 -9.8 -4.91852 | opp_overlap 368981 368979 368982 CTGATCATTAAACAG GGCGCC CTAACC GGCGCC TTTGTTTTTACTGGC TERM 399 368999 - 368982 - f 71 -9.8 -2.68493 | opp_overlap 368982, overlap 368981 368979 CTGATCATTAAACAG GGCGCC CTAACC GGCGCC TTTGTTTTTACTGGC YPA_0315 369061 - 369987 + | glutaminase YPA_0316 370099 - 370629 + | hypothetical protein YPA_0317 370587 - 370832 + | hypothetical protein TERM 400 370862 - 370838 - f 78 -5.6 -4.75472 | opp_overlap 370839 370840, overlap 370839 370840 CTTAGAGTAATAAAA GGGGGGGG GGGGATATT CCCCCTCC AAATTTAGAATCGCC TERM 401 373648 - 373637 - g 70 -3 -4.86731 | TTCCTTTAAACAAAA TGAT AAAA ATCA CCACCTACAATTTAT TERM 402 373700 - 373680 - g 76 -12.7 -2.57243 | overlap 373679 373677 373682 GTATTATTACAAGAT GACTCTCTT TCT AAGAGAGTC GGAGAGATTATTGCT TERM 403 374750 - 374731 - g 70 -10 -3.28447 | opp_overlap 374730 374731, overlap 374729 374732 TCATTGACGATAATA CTCACGCC GAGT GGCGTGAA ATTAGTCATAATGAA TERM 404 374749 - 374732 - g 70 -11.3 -2.56747 | opp_overlap 374731 374730, overlap 374731 374729 CATTGACGATAATAC TCACGCC GAGT GGCGTGA AATTAGTCATAATGA YPA_0318 371331 - 380663 + | putative virulence determinant TERM 405 380717 - 380690 - T 74 -9.8 -3.14961 | overlap 380688 380686 ATTAGCAGGAAGAGA GGCTGAGGGCAG GTTT CTGCCCTCAGAG ACACCAGTCATACTG YPA_0319 381995 - 380853 - | coproporphyrinogen III oxidase TERM 406 381674 - 381657 - G 70 -9.1 -3.56643 | opp_overlap 381671, overlap 381634 CTGATAGCCGCTAAA GCGATCG GCTT CGACCGC TCCGGGGTTGGCTTC YPA_0320 382569 - 381976 - | putative deoxyribonucleotide triphosphate pyrophosphatase YPA_0321 382959 - 382669 - | hypothetical protein YPA_0322 383510 - 382956 - | hypothetical protein TERM 407 383314 - 383304 - G 70 -3.2 -4.77036 | GGTCATCAGTAAAAA TGCC AAC AGCA ATGATGCGCTATCGA YPA_0323 384619 - 383798 - | pyrroline-5-carboxylate reductase YPA_0324 385450 - 384752 - | hypothetical protein TERM 408 385013 - 385049 + g 78 -13.1 -2.87527 | opp_overlap 385016, overlap 385017 ACTAATGCTGTCAGC CAAGGCGGGGAGTTC ACTCAAG GAAATCCCCGCTTTG CTTTGCTCATCACTG TERM 409 385017 - 385045 + g 84 -10.3 -4.11623 | opp_overlap 385016, overlap 385013 ATGCTGTCAGCCAAG GCGGGGAGTTC ACTCAAG GAAATCCCCGC TTTGCTTTGCTCATC YPA_0325 385470 - 386594 + | hypothetical protein TERM 410 386678 - 386651 - T 100 -15 -4.20783 | AGGTGATGCAATAAA TTAACCCGGATC GGAT GATCCGGGTCAA GCAGGCGGCTTATTT YPA_0326 387818 - 386703 - | agmatine deiminase YPA_0327 388706 - 387822 - | putative carbon-nitrogen hydrolase TERM 411 388748 - 388734 - R 95 -5.7 -5.59564 | ATAAATGTAAAAAAA CACCT GCAAG AGGTG TGCAATATTTTAAAC YPA_0328 389308 - 388886 - | Holliday junction resolvase-like protein YPA_0329 389871 - 389308 - | hypothetical protein YPA_0330 390946 - 389987 - | glutathione synthetase YPA_0331 391703 - 390972 - | hypothetical protein TERM 412 391506 - 391524 + g 74 -3.8 -4.9725 | opp_overlap 391518 CCATTGCCCTTCAGC GAGTCGGA CAA TCAGATTC TTTTTATCTGCCCGT YPA_0332 391744 - 391911 + | hypothetical protein YPA_0333 392662 - 391955 - | endonuclease I TERM 413 392425 - 392444 + g 84 -4.2 -5.31456 | gap 1, opp_overlap 392425, overlap 392428 392430 CATGTTCCCATTCAA T-CCGCGCG GCT CGCGCTGCA TTTTTTCTGGGTTGA TERM 414 392428 - 392440 + g 70 -10.5 -2.96157 | opp_overlap 392425, overlap 392425 392430 GTTCCCATTCAATCC GCGCG GCT CGCGC TGCATTTTTTCTGGG YPA_0334 393317 - 392760 - | hypothetical protein TERM 415 393419 - 393389 - R 100 -13.3 -4.62441 | opp_overlap 393389 GTGCATACAAATAAA CCACCCTGCCAGC GTGTT GCTTACAGGGTGG TTCTTCATCGTTTTA TERM 416 393389 - 393419 + r 100 -11.8 -3.81516 | opp_overlap 393389 GTGCATACAAATAAA CCACCCTGCCAGCG TGT TGCTTACAGGGTGG TTCTTCATCGTTTTA YPA_0335 394619 - 393465 - | S-adenosylmethionine synthetase YPA_0336 395826 - 397805 + | arginine decarboxylase TERM 417 397836 - 397855 + F 100 -8.6 -5.60993 | opp_overlap 397836 TCAGTATCGATTAAA GGGCAAAC TCAG GTTTGTCC TTTTTTTGTGCCCAG TERM 418 397875 - 397893 + F 100 -16 -3.07307 | opp_overlap 397875 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 419 397893 - 397875 - f 100 -16 -4.36914 | opp_overlap 397875 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0337 398006 - 398464 + | transposase for the IS1541 insertion element TERM 420 398542 - 398566 + F 88 -9.9 -4.15044 | opp_overlap 398545, overlap 398544 398545 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCGGCGCGAC TERM 421 398544 - 398564 + F 100 -12.5 -3.6761 | opp_overlap 398545, overlap 398542 398545 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCGGCGCG TERM 422 398563 - 398545 - f 100 -16 -4.8048 | opp_overlap 398544 398542 398545 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCGGCGC TERM 423 398545 - 398563 + F 100 -16 -2.80244 | opp_overlap 398545, overlap 398544 398542 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCGGCGC YPA_0338 398675 - 398995 + | putative Rieske protein TERM 424 399047 - 399074 + T 80 -9.8 -3.62046 | opp_overlap 399034 399048, overlap 399048 AACGTCAGCTACAGA ACTCACGCCCCA ACAG TGGGGAGTGAGG TTATTGACAAAGTGC TERM 425 399048 - 399073 + T 93 -13.3 -2.77013 | opp_overlap 399034 399048, overlap 399047 ACGTCAGCTACAGAA CTCACGCCCCA ACAG TGGGGAGTGAG GTTATTGACAAAGTG TERM 426 399073 - 399048 - T 100 -13.3 -3.52102 | opp_overlap 399048 399047, overlap 399034 ACGTCAGCTACAGAA CTCACGCCCCA ACAG TGGGGAGTGAG GTTATTGACAAAGTG TERM 427 399147 - 399173 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 399136, overlap 399142 399148 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 428 399148 - 399174 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 399136, overlap 399142 399147 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 429 399232 - 399260 + T 72 -9.6 -3.14564 | gap 1, overlap 399235 GGGGTTTGTCAGCAG T-CTGACGCCCCA ACAG TGGGGCGTCTGCA TTGATAAGAGACTGG TERM 430 399235 - 399256 + T 100 -15.9 -2.56596 | overlap 399232 GTTTGTCAGCAGTCT GACGCCCCA ACAG TGGGGCGTC TGCATTGATAAGAGA YPA_0339 400064 - 399285 - | putative lipoprotein TERM 431 399417 - 399431 + g 86 -7 -5.0133 | GGTTACCAGACCGTT CGGGTC AAT GCCCCG TTTTTTCAGCAAATC TERM 432 400354 - 400364 + H 71 -4.6 -4.63218 | ATGGTTTGTCGTTGT GCGG TGG CTGC TTTTGTTCACCCCAA YPA_0340 400528 - 402522 + | transketolase TERM 433 402600 - 402573 - f 75 -5.6 -4.58663 | ATTAGCCGTTAAAAA GTCATTAACTGT TAAA ACAGGCAACGAC GTTATCAATACTGCA TERM 434 402678 - 402663 - f 91 -10.4 -4.09864 | opp_overlap 402663 ATGCACCTGTTAAAA GACCGC TTTT GCGGTC TTTTTTTGTGCCCAG TERM 435 402663 - 402678 + F 100 -10.4 -5.60993 | opp_overlap 402663 ATGCACCTGTTAAAA GACCGC TTTT GCGGTC TTTTTTTGTGCCCAG TERM 436 402716 - 402698 - f 100 -16 -4.36914 | opp_overlap 402698 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 437 402698 - 402716 + F 100 -16 -3.07307 | opp_overlap 402698 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0341 402829 - 403287 + | transposase for the IS1541 insertion element TERM 438 403365 - 403389 + F 88 -9.9 -4.23045 | opp_overlap 403368, overlap 403367 403368 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGACTAATTC TERM 439 403367 - 403387 + F 100 -12.5 -3.70709 | opp_overlap 403368, overlap 403365 403368 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGACTAAT TERM 440 403386 - 403368 - f 100 -16 -4.8048 | opp_overlap 403367 403365 403368 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACTAA TERM 441 403368 - 403386 + F 100 -16 -2.81702 | opp_overlap 403368, overlap 403367 403365 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACTAA TERM 442 403430 - 403440 + F 70 -5.4 -4.49344 | overlap 403417 403424 TGTGCCCTTTTTCAG GGAA ATA TTCC TTTTATCATGACTTT TERM 443 403545 - 403524 - f 73 -5.8 -4.42653 | opp_overlap 403525, overlap 403525 403526 ATCCCACCGAGAAAA CCCGGCCA GTATTA TGGCCGAA TTGTGATAATACGAT YPA_0342 403628 - 404644 + | erythrose 4-phosphate dehydrogenase TERM 444 405293 - 405275 - g 100 -16 -3.56568 | opp_overlap 405267 405264 405292 GAAGCATTGGGTAAA GCGCTGGG TAA CCCAGCGC GTCCAATGGTTGCTA TERM 445 405669 - 405654 - g 76 -7.6 -4.31329 | opp_overlap 405662 TGAAAAATGCCAAAA CCATTC TGTG GAATGG TCCGGTTGGTGTGTT pgk 404747 - 405910 + | phosphoglycerate kinase YPA_0344 406030 - 407109 + | fructose-bisphosphate aldolase TERM 446 407130 - 407157 + F 100 -14.2 -3.62046 | opp_overlap 407137, overlap 407137 GTCTGTTCGGACTGA CCTAAAAGGCCC TACG GGGCCTTTGAGG TTATTGACAAAGTGC TERM 447 407137 - 407150 + F 78 -9.5 -3.72051 | opp_overlap 407137, overlap 407130 CGGACTGACCTAAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 448 407150 - 407137 - f 85 -9.5 -4.19817 | opp_overlap 407137 407130 CGGACTGACCTAAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 449 407230 - 407256 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 407219, overlap 407225 407231 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 450 407231 - 407257 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 407219, overlap 407225 407230 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 451 407335 - 407322 - f 78 -9.5 -3.58343 | opp_overlap 407322 GTCAGCAGTCTGAAA GGCCC TACG GGGCC TTTTTTCGTTGCTGA TERM 452 407322 - 407335 + F 100 -9.5 -5.30155 | opp_overlap 407322 GTCAGCAGTCTGAAA GGCCC TACG GGGCC TTTTTTCGTTGCTGA TERM 453 407475 - 407494 + F 93 -4.2 -5.78622 | overlap 407463 GGCCGTTGGCTAGAG TCGCCAGC GTTA GATGGTGA TTTTTTTTGGCGTAA TERM 454 407512 - 407526 + F 100 -7.8 -5.26316 | TTTTTTGGCGTAATT GCTCCT GTA GGGAGC TTTTTTGTAGGATGG YPA_0345 407547 - 408416 + | hypothetical protein TERM 455 408467 - 408452 - f 72 -7.5 -3.97308 | opp_overlap 408452 GGTAAATAGATTAAA CGGGC CTCAGT GCCCG TTTTTACTCGCTCGG TERM 456 408452 - 408467 + F 85 -7.5 -4.7497 | opp_overlap 408452 GGTAAATAGATTAAA CGGGC CTCAGT GCCCG TTTTTACTCGCTCGG YPA_0346 408679 - 409152 + | putative LysE type translocator YPA_0347 409975 - 409196 - | transposase/IS protein TERM 457 409894 - 409908 + g 77 -11.4 -3.3506 | overlap 409907 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0348 410997 - 409975 - | transposase for insertion sequence IS100 TERM 458 411019 - 411001 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 459 411087 - 411107 + G 76 -7.5 -4.30001 | overlap 411084 CCGTTCGTTACACTT TAGGGGCGG TTA CGGCCTCTA TTGTTTGGTTTTTTG YPA_0349 411050 - 411256 + | putative LysE/YggA type lysine exporter TERM 460 411661 - 411646 - g 79 -6.8 -4.64766 | TGCAGATGCCAAAAA GCAGGT CGAT ACCCGC GTCGCGCAATACTTT YPA_0350 411425 - 412225 + | hypothetical protein TERM 461 412241 - 412209 - T 71 -4.9 -4.64676 | CTACTGCCAATAAAA CAGTTGCTGCTCA GTAAACA TAAACAGCTACTG CCCAATAAACGAGTC YPA_0351 413144 - 412236 - | chromosome replication initiation inhibitor protein YPA_0352 413486 - 414142 + | ribose-5-phosphate isomerase A TERM 462 414146 - 414182 + F 71 -2.2 -5.22039 | overlap 414137 GTGATTGGCTAAAAT TTTTCAGGGTGTCGTT TATTT GGCTTCACCCTGATAA TTTTTTGCCTTTGAA TERM 463 414767 - 414801 + G 73 -12.2 -2.57974 | opp_overlap 414774, overlap 414762 TTCAATGCGCCTTTC TCCAATACCCGTTCGG TAG CCGAAATGGTATTGGG TGAGTTGCTGCTGAT TERM 464 415644 - 415634 - g 79 -6.8 -4.63542 | GATAATGCGGAAAAA GCCT TGC AGGC GATGAAGGCCATTCC YPA_0353 414449 - 415690 + | D-3-phosphoglycerate dehydrogenase TERM 465 415734 - 415708 - T 88 -10.8 -3.8901 | opp_overlap 415704 415703 CCTGAAATGATTAAA CGCCTGGGATCC ATA GGATCTCAGGTG TGAGGTTATTGACAA TERM 466 415813 - 415839 + T 72 -7.2 -3.9749 | gap 1, opp_overlap 415801, overlap 415812 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 467 415902 - 415928 + T 100 -22.4 -6.02914 | TTGTCAGCAGTCTGA CACCGGGGATCC ATA GGATCCCCGGTG TTTTTTTTATCTCGA YPA_0354 416551 - 415955 - | putative 5-formyltetrahydrofolate cyclo-ligase-family protein TERM 468 416399 - 416387 - G 79 -9.1 -4.17516 | GTCAAAGGAGAGAAA CACGG CTA CCGTG TGAGCTTGCTGGATT YPA_0355 417244 - 416915 - | Z-ring-associated protein YPA_0356 417581 - 418159 + | hypothetical protein TERM 469 419091 - 419105 + G 75 -9.2 -3.91032 | opp_overlap 419088 419084, overlap 419088 ATGGCAAATTTACCC CCGCTC AGC GGGCGG TTTATGACATCGTTC YPA_0357 418247 - 419560 + | proline aminopeptidase P II YPA_0358 419629 - 420807 + | 2-octaprenyl-6-methoxyphenyl hydroxylase YPA_0359 420980 - 422200 + | hypothetical protein TERM 470 422764 - 422774 + F 75 -8.2 -3.76167 | opp_overlap 422763, overlap 422762 TTGTCGCCTGAAGAG GGCG CCT CGCC TATTTTAGCTTATGG gcvT 422921 - 424018 + | glycine cleavage system aminomethyltransferase T YPA_0361 424087 - 424473 + | glycine cleavage system protein H TERM 471 424504 - 424479 - f 71 -9 -3.23979 | overlap 424474 TGAAGAGTAACTCAA GTGAGGGCCA TTTTAT TGGCCCTGAC GCCGAGTAGGTTAAA YPA_0362 424685 - 427564 + | glycine dehydrogenase TERM 472 427606 - 427581 - f 82 -8.2 -4.26903 | opp_overlap 427581 427581, overlap 427585 CTCATCTGAGCAAAA CCAAGGGCCG TGAAAG CGGCCCTGAG GTTATTGACAAAGTG TERM 473 427602 - 427585 - f 80 -9.8 -3.71672 | opp_overlap 427581 427581, overlap 427581 TCTGAGCAAAACCAA GGGCCG TGAAAG CGGCCC TGAGGTTATTGACAA TERM 474 427681 - 427707 + F 72 -7.2 -3.9749 | gap 1, opp_overlap 427669, overlap 427676 427680 CATCCATGTAGGCTC GAG-CCGCGCC TTCTCT GGCGCGGACGC TTTACTCTTCTGCCT YPA_0363 427942 - 428379 + | hypothetical protein YPA_0364 428751 - 428876 + | hypothetical protein TERM 475 429270 - 429283 + F 70 -5.3 -4.47183 | overlap 429266 CAACTAGCCGACATT CCATA ATGT TATGG TTTGTTTAGATAATA YPA_0365 429428 - 429592 + | hypothetical protein YPA_0366 429625 - 431565 + | putative surface protein YPA_0367 431669 - 432772 + | hypothetical protein YPA_0368 432974 - 433675 + | putative hemolysin III YPA_0369 433933 - 434430 + | hypothetical protein TERM 476 434487 - 434460 - T 100 -18.6 -5.23292 | opp_overlap 434466 434468 TGATATAAAACAAAA TACAGAGACCGG TTAA CCGGTCTCTGTA GAGTAGAACTCTTTA TERM 477 434466 - 434481 + T 75 -10.4 -2.89564 | opp_overlap 434460, overlap 434468 AAAACAAAATACAGA GACCGG TTAA CCGGTC TCTGTAGAGTAGAAC TERM 478 434488 - 434498 + T 73 -5.4 -4.66814 | TAACCGGTCTCTGTA GAGT AGA ACTC TTTATTATTTATCTT YPA_0370 435495 - 434503 - | putative global regulator TERM 479 435102 - 435113 + g 74 -7.2 -4.14739 | ATTCAGTAAAGATTT CCGC CAGC GCGG TTTTGGCCTGGCTAC TERM 480 435669 - 435655 - H 80 -2.8 -5.52384 | opp_overlap 435655 435657, overlap 435657 GGGCGATTAAAAAAA TGCACT TGC AGTGTA TTTAGTACCTTAACC TERM 481 435693 - 435712 + H 78 -10 -3.54382 | overlap 435709 CTTAACCCCCTATCC CGGGAGTG GTAA CATTCCCG TTAGTTATATTAACG YPA_0371 435812 - 436078 + | hypothetical protein YPA_0372 436059 - 436484 + | hypothetical protein YPA_0373 436484 - 437182 + | DNA-binding response regulator CreB YPA_0374 437207 - 438625 + | sensory histidine kinase CreC TERM 482 439192 - 439211 + G 70 -9.2 -3.55444 | GCTGGCACTGAGTGA TGCGCGGG GTAT CCAGCGCA TTTCGCCACTCAGCG YPA_0375 438725 - 440203 + | hypothetical protein TERM 483 440262 - 440224 - T 77 -11.2 -2.8655 | opp_overlap 440234, overlap 440229 440230 CGCAGCTAGACTAGA CTAAACTTAACGGGCA TATCGGG TGCCCGTTAAATTGAG CTCTGATGTAACAGG TERM 484 440257 - 440229 - T 84 -9.7 -3.8766 | opp_overlap 440234, overlap 440224 440230 CTAGACTAGACTAAA CTTAACGGGCA TATCGGG TGCCCGTTAAA TTGAGCTCTGATGTA TERM 485 440256 - 440230 - T 79 -11 -2.92114 | opp_overlap 440234, overlap 440229 440224 TAGACTAGACTAAAC TTAACGGGCA TATCGGG TGCCCGTTAA ATTGAGCTCTGATGT YPA_0376 440874 - 440293 - | flavodoxin FldB xerD 440918 - 441817 + | site-specific tyrosine recombinase XerD YPA_0378 441848 - 442564 + | thiol:disulfide interchange protein DsbC TERM 486 442826 - 442851 + G 79 -11.1 -3.56643 | overlap 442827 GATGCTGACGGCGCG ACCAGTACCGC GTTG GCGGTGCTGGC TTTGCGCAGTATGGG TERM 487 442827 - 442850 + G 82 -14.6 -2.73771 | overlap 442826 ATGCTGACGGCGCGA CCAGTACCGC GTTG GCGGTGCTGG CTTTGCGCAGTATGG YPA_0379 442571 - 444304 + | ssDNA exonuclease RecJ TERM 488 444619 - 444597 - f 100 -13.4 -4.0802 | ACTGGAAGAAGTAAA CGCCGAGCTG GAA CAGCCCGACG TCTGGAATGAACCCG prfB 444649 - 445581 + | peptide chain release factor 2 lysS 445591 - 447108 + | lysyl-tRNA synthetase TERM 489 447137 - 447152 + F 100 -11.8 -4.7497 | ACGATAAATTCCTCA GGGCGC TACG GCGCCC TTTTTACTGAGTCAG YPA_0382 447541 - 447747 + | integrase YPA_0383 448577 - 447798 - | transposase/IS protein TERM 490 448496 - 448510 + g 77 -11.4 -3.3506 | overlap 448509 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0384 449601 - 448672 - | putative transposase TERM 491 449623 - 449605 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_0385 449658 - 450716 + | integrase TERM 492 450781 - 450766 - T 75 -9 -3.5936 | opp_overlap 450766 TCCAAACTTTTTAAA GGCATC TCAC GATGCC TTTTTGTATTTAGAG TERM 493 450766 - 450781 + T 100 -9 -5.19879 | opp_overlap 450766 TCCAAACTTTTTAAA GGCATC TCAC GATGCC TTTTTGTATTTAGAG YPA_0386 450983 - 450798 - | hypothetical protein YPA_0387 451209 - 451084 - | hypothetical protein TERM 494 451318 - 451291 - H 80 -10.5 -3.54424 | TCTCAGGCTGCTAAA CCCAGCAACGG ATTTTG CCGCTGCGGGG GCACTATATCTGACC YPA_0388 451581 - 451841 + | hypothetical protein YPA_0389 451904 - 452266 + | putative DNA binding protein TERM 495 452391 - 452377 - f 70 -7.2 -3.87075 | opp_overlap 452377 452375, overlap 452350 ATGACTTGCTATAAA TAACCT ACT AGGTTA TATTTATTAAGTGGA YPA_0390 452430 - 452726 + | hypothetical protein YPA_0391 452726 - 453124 + | hypothetical protein TERM 496 453342 - 453373 + T 71 -4.4 -4.7497 | TCTGAATACTCCCCG CTGAACTCTTCAGC AACT GTTCAGGTGTTCAG TTTTTAATACCTGCC TERM 497 453452 - 453418 - T 93 -12.4 -3.04248 | opp_overlap 453418 GAACACCTCTGAATA CTGACTGAACAGTT ATTAGTA AACTATTCAGTCAG TTTTTATCTTTGTAT TERM 498 453418 - 453452 + T 100 -10.2 -5.26155 | opp_overlap 453418 GAACACCTCTGAATA CTGACTGAACAGTT ATTAGTA AACTATTCAGTCAG TTTTTATCTTTGTAT YPA_0392 455815 - 453524 - | putative primase TERM 499 453623 - 453634 + g 80 -2.2 -5.5208 | GTAGCGGAACCCTTT GTCA GTTC TGGC TTTTTTGTATTCTGC TERM 500 455052 - 455065 + g 72 -3.7 -4.82901 | overlap 455053 GTCACCCAACCATTG ACCGC GTTG GCGGC TTTTTCTGCGGACAA YPA_0393 456603 - 455944 - | hypothetical protein TERM 501 456023 - 456061 + gH 74 -6.6 -4.2828 | opp_overlap 456027, overlap 456011 456027 TTGCTCCGTGGTGGA TAAACGCCCCGGCAGTAT TGA GTGATGTCGGGGCGTTCC TTTTGATACATCCGC TERM 502 456027 - 456057 + gH 93 -11.8 -3.72073 | opp_overlap 456027, overlap 456011 456023 TCCGTGGTGGATAAA CGCCCCGGCAGTAT TGA GTGATGTCGGGGCG TTCCTTTTGATACAT TERM 503 456387 - 456374 - Gg 79 -5.2 -5.00616 | TTGTGGTGCAAAAAA CGGC TTATAT GCCG TGGAAAGAGAAAGGC YPA_0394 456115 - 456441 + | hypothetical protein YPA_0395 456800 - 456600 - | putative regulatory protein TERM 504 456665 - 456716 + g 74 -6.6 -4.40993 | gap 1, opp_overlap 456670 TCACCTCACTTTCAA CAAAAGCGATAGCCCGCCCCC CTATTTTTATC GGTGGCGGGA-AGCGCTTTTG TTTTAATAATTTATA TERM 505 456901 - 456888 - R 75 -3.1 -5.18866 | opp_overlap 456888, overlap 456883 GGCAAATAAATAAAA GGAAC CTTT ATTCC TGTCGTTTTAGGTCA YPA_0396 457314 - 456982 - | hypothetical protein YPA_0397 457556 - 457320 - | hypothetical protein YPA_0398 457934 - 457569 - | hypothetical protein YPA_0399 458203 - 459345 + | hypothetical protein YPA_0400 459852 - 461390 + | hypothetical protein TERM 506 461546 - 461529 - g 73 -2.7 -4.93877 | gap 1, overlap 461532 GTGGAGCAAATAAAA TGAGCCTC AAC GAAGC-CA AAGAAGCCTACAAGC YPA_0401 461387 - 461581 + | hypothetical protein TERM 507 463576 - 463592 + GF 72 -7.9 -3.76835 | AGTTCTCAAGCATGG GTCGCAG AAA CAGCGAC TTATATGTTGTTCCG TERM 508 464429 - 464419 - gf 76 -3.2 -5.11836 | ATACTCAAAACAAAA GCTC AAA AAGC ACTTTTACAACAGCA YPA_0402 462862 - 465057 + | hypothetical protein TERM 509 465276 - 465265 - gf 71 -5.8 -4.36914 | overlap 465267 CCTGGTTTCAGAAAA TGGG GCTA CCCA GCTCTAGGCTGACAC YPA_0403 465027 - 465794 + | hypothetical protein YPA_0404 466399 - 467178 + | hypothetical protein YPA_0405 467395 - 467700 + | hypothetical protein YPA_0406 468103 - 467783 - | hypothetical protein YPA_0407 468783 - 468103 - | hypothetical protein TERM 510 468192 - 468216 + g 73 -9.4 -3.80733 | gap 1 TGTCTACCGCAGCCA GTAGCGCCGTA TTAA TACG-CGCTAC TTGTTCTGGCGTGAG TERM 511 468885 - 468867 - R 75 -7.4 -4.27861 | opp_overlap 468867 468878, overlap 468868 AAGATATATCTAAAA CGCGTTAC TGC GCAACGCA TCCCGCGTGCTTTTA TERM 512 469010 - 468997 - R 77 -3.9 -5.21709 | overlap 469008 GGGGATATCAAAAAA TGATT TTTA AATCA AAATGTTGAACTGGG TERM 513 469200 - 469188 - R 74 -4.8 -4.82901 | opp_overlap 469158 CCCTTCTGATAAAAA GGTG AGCAG CACC AAACGGTTATTGGCT YPA_0408 470064 - 469207 - | hypothetical protein YPA_0409 470958 - 470440 - | hypothetical protein TERM 514 471716 - 471689 - R 100 -12.7 -3.57792 | opp_overlap 471706 GGATTTACCCTCAAA CCCGACAGCAG ATTTTG CCGCTGCCGGG GGCGATAGCGATCAT YPA_0410 472738 - 471737 - | sugar-binding periplasmic protein TERM 515 472700 - 472728 + g 80 -2.3 -5.52384 | overlap 472703 AAAGGAAAGTATCAG CGTTGCAGCAAGC AGA GTTTGTAGCATTG TTTTTTTCATAAAAG TERM 516 472703 - 472725 + g 74 -4.8 -4.8487 | overlap 472700 GGAAAGTATCAGCGT TGCAGCAAGC AGA GTTTGTAGCA TTGTTTTTTTCATAA YPA_0411 474177 - 473173 - | sugar transport system permease YPA_0412 475757 - 474249 - | sugar transport ATP-binding protein TERM 517 476231 - 476253 + r 73 -9.1 -3.46509 | overlap 476225 CTATCTTAATATTCA GCGGGCTTC AACAG GAAACCCGC TTGGTATTCTTAACC YPA_0413 477406 - 476306 - | sugar transport ATP-binding protein TERM 518 477443 - 477463 + H 84 -3.9 -5.50313 | opp_overlap 477449, overlap 477450 CAGTCAGGGGGCCAT CACACATCA CCC TGAGGTGCG TTTTTTGATTTTATG YPA_0414 477769 - 479004 + | putative sugar-binding protein TERM 519 480065 - 480075 + G 74 -4.6 -4.87389 | TGATGCAGACGTGGC TGGG TTT CCCG TTTGTTTTTGCCATG YPA_0415 479164 - 480471 + | putative maltodextrin transport permease YPA_0416 480483 - 481334 + | putative maltodextrin permease protein YPA_0417 481339 - 482541 + | putative galactosidase TERM 520 482563 - 482543 - f 83 -11.9 -2.60571 | opp_overlap 482538, overlap 482542 AAGTTTTTAATTAAT CGTTGCCCA TTA TGGGCAACA CCAAGTATTTATTAT TERM 521 483800 - 483813 + G 76 -5.3 -4.8622 | AAGTAAAGTAGACGC TGATG TTGC CATCA TTTTTGATTGGGAAA TERM 522 484193 - 484162 - g 74 -7.4 -4.15044 | gap 1, overlap 484190 484191 TCTGGTCCGAAGAAA TTGACTG-TCTGGCC GAT GGCGAGAGCAATCAA GTCCAAGGACTTGCA TERM 523 484471 - 484505 + G 71 -7.8 -3.99324 | overlap 484475 AGTTCCCTTATGGGG TTACCGCTCACCGTCG TAC CGATGGTGAGAGTGAA TTTATCGTGGTAGAA TERM 524 484475 - 484501 + G 77 -13 -2.7242 | overlap 484471 CCCTTATGGGGTTAC CGCTCACCGTCG TAC CGATGGTGAGAG TGAATTTATCGTGGT YPA_0418 482592 - 484652 + | puative beta-galactosidase TERM 525 484674 - 484695 + F 100 -12.3 -5.47218 | opp_overlap 484674 ACTGAATGCCATACA CGCCCATTC AGCC GAGTGGGCG TTTTTTTACATCGAC TERM 526 484695 - 484674 - f 73 -10.1 -2.9186 | opp_overlap 484674 ACTGAATGCCATACA CGCCCATTC AGCC GAGTGGGCG TTTTTTTACATCGAC YPA_0419 484764 - 485075 + | PTS transport protein TERM 527 485269 - 485244 - T 100 -16.3 -4.73108 | GGTATAAAACTAAAA TGCTCACTACC TAAG GGTAGTGAGCA TAGAAGAATAACCGA YPA_0420 486707 - 485448 - | maltoporin lacI 486979 - 488052 + | lac repressor TERM 528 488152 - 488131 - T 100 -15.9 -4.96501 | overlap 488148 CCGTACAAAAATAAA CGGGCTTCC ATCA GGAAGCCCG TCAGACTGCTGACAA TERM 529 488242 - 488216 - T 86 -10.1 -3.98282 | gap 1, overlap 488217 488230 488232 488233 GGCAGAGGAAGTAAA GCGTCCGCGCCA AAGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 530 488243 - 488217 - T 73 -10.1 -2.98487 | gap 1, overlap 488216 488230 488232 488233 GCAGAGGAAGTAAAG CG-TCCGCGCCA AAGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 531 488319 - 488344 + T 84 -9.7 -3.84017 | opp_overlap 488316, overlap 488321 CTTTGTCAATAACCT CACGGGCTTCC ATCA GGAAGTCCGTC TTGTATTTAACATTA TERM 532 488321 - 488342 + T 100 -12.3 -3.49634 | opp_overlap 488316, overlap 488319 TTGTCAATAACCTCA CGGGCTTCC ATCA GGAAGTCCG TCTTGTATTTAACAT YPA_0422 490740 - 488365 - | putative glucosidase YPA_0423 492198 - 490891 - | putative sugar transporter TERM 533 491751 - 491769 + g 70 -2.3 -5.00616 | overlap 491744 491754 CCACCCCTGCCCATC CAGCGGC AATGG GCCGTTC TTTTTTCGGGAACCA TERM 534 491754 - 491766 + g 76 -6.2 -4.61482 | overlap 491744 491751 CCCCTGCCCATCCAG CGGC AATGG GCCG TTCTTTTTTCGGGAA TERM 535 492335 - 492353 + H 82 -3.2 -5.56264 | opp_overlap 492335 GCGATATAAAATATA CTCAAT TGATAAT ATTGAG TTTTTTATATTTCAA TERM 536 492648 - 492622 - g 75 -8.8 -3.8691 | overlap 492620 AAAATACAAGAAATA GCTAATCAAACG GGT CTTTCGATTAGC ACGGTATCAAGAGTG YPA_0424 492592 - 493674 + | LacI-family regulatory protein TERM 537 493789 - 493763 - T 95 -13.1 -3.05844 | opp_overlap 493769, overlap 493765 493769 TTGGGGAGTCGAAGA GACGAACCGCA GACCA TGCGGTTCATC AACGGTACTGGCTAT TERM 538 493787 - 493765 - T 74 -9.9 -3.08813 | opp_overlap 493769, overlap 493763 493769 GGGGAGTCGAAGAGA CGAACCGCA GACCA TGCGGTTCA TCAACGGTACTGGCT YPA_0425 494493 - 493915 - | ThiJ/PfpI-family thiamine biogenesis protein TERM 539 494319 - 494348 + g 74 -9.9 -3.57792 | opp_overlap 494328 GGTGATCCAGACGAT CGCTTAACAGCGC ATCT GCGCTGATCGGCG TTTCAAAATAGGTGC gatY 495371 - 494517 - | tagatose-bisphosphate aldolase YPA_0427 496967 - 495480 - | hypothetical protein YPA_0428 498697 - 497090 - | putative sulfatase TERM 540 497134 - 497152 + g 91 -11 -4.36903 | GATAGCGATCTTGCC CCCAAGCC ACG GGTTTGGG TTTATCTTTGATCCA TERM 541 498152 - 498168 + g 71 -6.5 -4.15565 | GACGGAGATCATGTT GTCGTGA TAA TCGCGGC TTTTGACCTCATCGG TERM 542 498506 - 498520 + g 84 -4.2 -5.25803 | overlap 498491 498487 498502 GCGTACGGGAACTGG GCGCTG GCT TAGTGC TTTTTTATCCAGATT YPA_0429 499944 - 498718 - | putative regulatory protein TERM 543 500115 - 500096 - R 100 -12.2 -5.24531 | ATCGCCTATAAAAAA CGCACATC AGGT GATGTGCG CCAGTGCAACAAAAT YPA_0430 501246 - 500188 - | hypothetical protein TERM 544 500437 - 500422 - G 79 -6.8 -4.63932 | opp_overlap 500426 CAGCCCGTAACAAAA CAGCGC TGTT GCACTG CTCTCTGGGGCAGGA YPA_0431 502017 - 501262 - | 2-deoxy-D-gluconate 3-dehydrogenase YPA_0432 503379 - 502213 - | putative acetylglucosamine-6-phosphate deacetylase TERM 545 503001 - 502991 - G 74 -6.8 -4.36914 | GGCCCCTCCAGAAAA CTGC CGA GCAG GGTTGCGGTGCGGGT YPA_0433 503822 - 503382 - | putative PTS permease protein YPA_0434 504798 - 503908 - | putative PTS permease protein TERM 546 504553 - 504572 + g 76 -6.4 -4.63218 | opp_overlap 504552, overlap 504555 CGATTTCGCCAAATC TGCACGGT TGTT ACCGTGGA TTTTCTTCAACGCGG YPA_0435 505576 - 504788 - | putative PTS permease protein YPA_0436 506120 - 505623 - | putative PTS transport protein YPA_0437 507304 - 506138 - | putative phosphosugar isomerase TERM 547 507145 - 507127 - G 71 -5.8 -4.41633 | overlap 507124 507128 CACCGGTAAAAATAA TCCGCGTG TTA CTCGCGGC TAATGCCTGATGCAG YPA_0438 508599 - 507301 - | putative tagatose 6-phosphate kinase TERM 548 508289 - 508315 + g 80 -10.2 -3.79747 | overlap 508290 GCATGCGCCATGGCT TCGTTGGCAG GCAAGTG CTGCCAACGG TTTGGTCCTAAATGG TERM 549 508290 - 508314 + g 73 -11.5 -2.87527 | overlap 508289 CATGCGCCATGGCTT CGTTGGCAG GCAAGTG CTGCCAACG GTTTGGTCCTAAATG YPA_0439 509425 - 508649 - | DeoR family regulatory protein YPA_0440 510265 - 511818 + | putative sulfatase TERM 550 511840 - 511869 + T 100 -14.5 -3.44206 | gap 1 ATCGACGGCTGACTT CCTCTTCCTGA-CA ATC TGCTCAGGAAGAGG TTATCGTGGATCTTG TERM 551 512004 - 511989 - T 100 -11.8 -4.91084 | GACCTAATAATAAAA GGGCGC CTAA GCGCCC GCAGACTGCTGACAA TERM 552 512093 - 512067 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 512076, overlap 512068 512083 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 553 512094 - 512068 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 512076, overlap 512067 512083 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 554 512192 - 512168 - T 88 -9.9 -4.1552 | opp_overlap 512171, overlap 512170 512171 CACTTTGTCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 555 512190 - 512170 - T 100 -12.5 -3.6761 | opp_overlap 512171, overlap 512168 512171 CTTTGTCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 556 512189 - 512171 - T 100 -16 -2.80244 | opp_overlap 512171, overlap 512170 512168 TTTGTCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 557 512171 - 512189 + T 100 -16 -4.8048 | opp_overlap 512171 512170 512168 TTTGTCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_0441 512704 - 512270 - | putative transposase TERM 558 512739 - 512757 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0442 512761 - 513783 + | transposase for insertion sequence IS100 TERM 559 513864 - 513850 - g 77 -11.4 -3.3506 | overlap 513841 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0443 513783 - 514562 + | transposase/IS protein YPA_0444 514738 - 514613 - | transposase for the IS1541 insertion element TERM 560 514800 - 514818 + r 100 -16 -4.37092 | opp_overlap 514800 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 561 514818 - 514800 - R 100 -16 -3.07307 | opp_overlap 514800 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 562 514831 - 514865 + r 79 -7.9 -4.33274 | gap 1, opp_overlap 514836 514837, overlap 514833 514837 GGGTTTTCTGGGCAC AATAACCTCAGGGCGC CTAA GCGCCCTGA-GTCATG TTTTAATCATGTAAC TERM 563 514833 - 514863 + r 86 -10.5 -3.76811 | gap 1, opp_overlap 514836 514837, overlap 514831 514837 GTTTTCTGGGCACAA TAACCTCAGGGCGC CTAA GCGCCCTGA-GTCA TGTTTTAATCATGTA TERM 564 514861 - 514836 - R 100 -14.7 -3.78934 | opp_overlap 514833 514831 514837, overlap 514837 TTCTGGGCACAATAA CCTCAGGGCGC CTAA GCGCCCTGAGT CATGTTTTAATCATG TERM 565 514860 - 514837 - R 100 -18.2 -2.87146 | opp_overlap 514833 514831 514837, overlap 514836 TCTGGGCACAATAAC CTCAGGGCGC CTAA GCGCCCTGAG TCATGTTTTAATCAT TERM 566 514837 - 514860 + r 100 -18.2 -2.96723 | opp_overlap 514837 514836, overlap 514833 514831 TCTGGGCACAATAAC CTCAGGGCGC CTAA GCGCCCTGAG TCATGTTTTAATCAT YPA_0445 518020 - 514907 - | hypothetical protein TERM 567 515785 - 515765 - G 75 -9.1 -3.87149 | opp_overlap 515764 515765 CGCATCAAATTTAAA GGCAAACAT GCC ATATTTGCC ACTTAGTGATGAGTG YPA_0446 520276 - 518090 - | hypothetical protein YPA_0447 521341 - 520391 - | hypothetical protein YPA_0448 521557 - 521363 - | hypothetical protein YPA_0449 522252 - 521944 - | hypothetical protein TERM 568 522594 - 522572 - H 88 -9.8 -4.12188 | overlap 522573 GTACTACCTTTAAAA CGCCGTGCAT TAA ATGCCCGGCA TACAATAGGGTTATA TERM 569 522593 - 522573 - H 79 -11.1 -3.06991 | overlap 522572 TACTACCTTTAAAAC GCCGTGCAT TAA ATGCCCGGC ATACAATAGGGTTAT YPA_0450 522628 - 523383 + | putative carbonic anhydrase YPA_0451 524126 - 524542 + | hypothetical protein TERM 570 524643 - 524633 - g 86 -5.4 -5.30189 | overlap 524625 GATAAGACTAAAAAA TCCT TTT AGGA CACTCAACTGTAATC YPA_0452 524580 - 525113 + | general secretion pathway protein C TERM 571 525221 - 525236 + G 89 -2.6 -5.8187 | gap 1, opp_overlap 525221, overlap 525223 GGCAAAGGAATTAAA TCTATCC ATG GGAT-GA TTTTTTTATTCACTC TERM 572 525365 - 525354 - g 70 -3 -4.79657 | overlap 525346 AGAATATTAATAAAA CTAT TATC ATAG ATCCTACGGTCCAAG YPA_0453 525194 - 527116 + | general secretion pathway protein D TERM 573 527552 - 527542 - g 82 -4 -5.24129 | opp_overlap 527542 TCTTTCGATAAAAAA CTTA CTG TAAG ATTTCGTATTGATGG YPA_0454 527263 - 528624 + | general secretion pathway protein E YPA_0455 528766 - 529812 + | putative general protein secretion protein TERM 574 530035 - 530052 + G 77 -9.9 -3.76224 | GGATTATCCGACCGA GCAGCAA GGCA TTGCTGC TTTAGTAACTAAACC YPA_0456 529832 - 530269 + | general secretion pathway protein G YPA_0457 530274 - 530816 + | hypothetical protein YPA_0458 530854 - 531198 + | general secretion pathway protein I YPA_0459 531170 - 531787 + | general secretion pathway protein J YPA_0460 531796 - 532752 + | general secretion pathway protein K YPA_0461 532736 - 533926 + | general secretion pathway protein L YPA_0462 533923 - 534384 + | hypothetical protein YPA_0463 534410 - 535252 + | prepilin peptidase YPA_0464 535609 - 535304 - | putative lipoprotein TERM 575 536449 - 536433 - gH 71 -6.7 -4.15703 | opp_overlap 536431 536433 TTGGATAAAGAACAA GATAAAA CGT TTTTATC TGTTTATCAGCAGCA YPA_0465 535893 - 536642 + | putative regulatory membrane protein YPA_0466 536605 - 537006 + | hypothetical protein TERM 576 538820 - 538790 - g 91 -9.1 -4.84359 | overlap 538792 TTACCTGTAGAAAAA TACTCTCCTCTAC GATTA GCAAAGGAGAGCA CGATTGCTGCTATTG TERM 577 538818 - 538792 - g 80 -9.5 -4.04397 | overlap 538790 ACCTGTAGAAAAATA CTCTCCTCTAC GATTA GCAAAGGAGAG CACGATTGCTGCTAT YPA_0467 537161 - 538852 + | methyl-accepting chemotaxis protein YPA_0468 539473 - 538838 - | hypothetical protein YPA_0469 540473 - 539586 - | hypothetical protein YPA_0470 540580 - 541488 + | LysR family transcriptional regulator YPA_0471 541857 - 543017 + | putative sugar transport protein YPA_0472 543955 - 543014 - | DNA-binding transcriptional regulator LysR TERM 578 544426 - 544412 - g 70 -11.4 -2.64155 | opp_overlap 544409, overlap 544409 544408 TTTGGGTGAAATCGA GCGTGC CTT GCACGC GGGTTATCAACCGGG YPA_0473 544170 - 545432 + | diaminopimelate decarboxylase YPA_0474 546451 - 545429 - | DNA-binding transcriptional regulator GalR YPA_0475 546761 - 549022 + | putative biotin sulfoxide reductas2 TERM 579 549339 - 549356 + F 100 -11.3 -6.11644 | TTTTATTTGCACCGA CCTACGC AGAT GCGTAGG TTTTTTTTTAGGTAC YPA_0476 549471 - 551627 + | bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase TERM 580 552426 - 552447 + G 87 -10.1 -4.38712 | gap 1, overlap 552427 CGATTGGGATTGTGG TGGGCG-CGG GTG CCGCCGCCCG TTTTGTGACGCTAAA TERM 581 552427 - 552446 + G 76 -11.4 -3.22906 | gap 1, overlap 552426 GATTGGGATTGTGGT GGGCG-CGG GTG CCGCCGCCC GTTTTGTGACGCTAA YPA_0477 551624 - 552844 + | hypothetical protein TERM 582 552901 - 552850 - T 83 -11.8 -2.69964 | gap 1, opp_overlap 552871, overlap 552868 GCCTGAATGATATGA TTTGTCTGTCATCTGAAAGGATCTC AAG GAGATCC-TTCAGACTGCTGACAAA TATCGCCTTTTGAAA TERM 583 552884 - 552868 - T 84 -10.9 -3.59979 | opp_overlap 552871, overlap 552850 GTCTGTCATCTGAAA GGATCTC AAG GAGATCC TTCAGACTGCTGACA YPA_0478 553106 - 552873 - | hypothetical protein TERM 584 553595 - 553566 - R 100 -16.5 -3.02511 | GGCACTTTGTCAATA CCCTGAAGGCCGC ATCA GCGGCCTTCAGAA TGCTGACAAACCCCG TERM 585 553678 - 553652 - R 70 -7.2 -3.74872 | gap 1, opp_overlap 553661, overlap 553653 AGGCAGGGGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG TERM 586 553758 - 553773 + r 91 -11.8 -3.43203 | opp_overlap 553753 553752 TGTCAATAACCTCAA GGCCGC ATCA GCGGCC TTCATATTATGATAG YPA_0479 554853 - 553813 - | putative aldo-keto reductase TERM 587 553965 - 553954 - G 74 -7.2 -4.16842 | overlap 553955 CGTACTGGCAACAAA CGGC TGTT GCCG CACAAAGGCCAGAGC TERM 588 554616 - 554628 + g 71 -10.5 -3.1733 | overlap 554614 554613 CTAAAATAATTTTTT CGCGG CAA CCGCG TGCTTTTATCCAGCG YPA_0480 555151 - 554972 - | hypothetical protein TERM 589 555136 - 555156 + g 72 -8.3 -3.96298 | AGATATAAAGCACCT GCGGGAT AGAGAAC ATCCCGC TTTAATTAATCACTA YPA_0481 555928 - 555242 - | DNA mismatch repair protein TERM 590 555637 - 555664 + g 71 -5.6 -4.49389 | gap 1 TCCCGGTGAGTGGTG CCAC-GCAGACGA ATG TCGTTTCCAGTGG TTTTCCTTGTGCACT TERM 591 556183 - 556197 + H 73 -3.5 -5.08011 | CTGGTTCAATTTACA GCCTT GACGA GAGGC TTTTTTGCGAGTTTT TERM 592 556206 - 556216 + H 81 -5.4 -5.10497 | GAGAGGCTTTTTTGC GAGT TTT ACTC TTTTTTGCGTAACTT YPA_0482 556626 - 557153 + | dinucleoside polyphosphate hydrolase TERM 593 557326 - 557356 + G 76 -12.5 -2.62983 | opp_overlap 557345 557346, overlap 557354 GTTACTACCTAATGG CGACCAGGGGGCT GAAAA AGCCCCGTGGGCG TACTATCACGCTGGC TERM 594 557355 - 557345 - g 82 -8.2 -4.57073 | opp_overlap 557326 557354, overlap 557346 CAGGGGGCTGAAAAA GCCC CGT GGGC GTACTATCACGCTGG YPA_0483 557166 - 559412 + | fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein YPA_0484 559663 - 560535 + | prolipoprotein diacylglyceryl transferase TERM 595 560964 - 560985 + G 82 -7.3 -4.6902 | gap 1, opp_overlap 560963 560964, overlap 560969 CGAACTGGATCAAAT GGCGTTGGCA CCA TGCCA-TGCC TTTTTCCAGTTCTAC thyA 560542 - 561336 + | thymidylate synthase TERM 596 561346 - 561364 + F 86 -8.8 -4.36485 | ATTTAATCTTCATAT CGGAGCTG TAA TGGCTCCG TTTTGCGTCTTTTAT TERM 597 561468 - 561453 - f 74 -4.7 -4.82901 | GTCTTCCGATAAAAA TGCGA GTCGTA TCGCA GACCTCCCTGTATTT TERM 598 561650 - 561638 - g 76 -4.9 -5.04601 | CTTAGAAAGCAAAAA GTTTT TAT AAAAC AAAGATCACTAATAA YPA_0486 561572 - 562141 + | hypothetical protein YPA_0487 562132 - 562740 + | hypothetical protein YPA_0488 562737 - 563207 + | hypothetical protein YPA_0489 563195 - 563605 + | putative prepilin peptidase dependent protein recC 563740 - 567111 + | exonuclease V subunit gamma TERM 599 568298 - 568312 + G 78 -6.4 -4.88407 | TGGCACAACGTGATG TTGTCG TCG CGGCAA TTTTTGATTACATCA TERM 600 568376 - 568358 - g 95 -6 -5.52986 | AGGGGATTAAAAAAA GCTATTTC GAT GAAATTGC ACATGTATTGAATCT TERM 601 569517 - 569529 + G 70 -9.1 -3.61715 | AGAAATTGCTGGTAT GGCAC GTA GTGCC TTGTTAGGGCAGATC YPA_0491 567193 - 570081 + | protease III precursor TERM 602 571119 - 571107 - g 70 -3.3 -4.79223 | GTACAGCAGGAAAAA CGGCA GCG TGCAG AGCTGGGGTTTGATG RecB 570078 - 573740 + | exonuclease V subunit beta TERM 603 575581 - 575597 + G 71 -6.5 -4.1552 | overlap 575582 CGCCATTACCCGCGC CCGTCAG CAT CTGACGC TTTATTGCAGCGATG RecD 573737 - 575695 + | exonuclease V subunit alpha TERM 604 575719 - 575696 - T 75 -8.8 -3.66772 | opp_overlap 575697, overlap 575697 TTAAATCGCCAATAA TCTCAGGGCA TAAG CGCCCTGAGT TATCTGTTTCAAATA TERM 605 575697 - 575718 + T 95 -11.6 -3.76634 | opp_overlap 575696 575697 TAAATCGCCAATAAT CTCAGGGC ATAAGC GCCCTGAG TTATCTGTTTCAAAT TERM 606 575718 - 575697 - T 89 -12.3 -2.79581 | opp_overlap 575697, overlap 575696 TAAATCGCCAATAAT CTCAGGGCA TAAG CGCCCTGAG TTATCTGTTTCAAAT YPA_0494 577175 - 575850 - | N-acetylglutamate synthase YPA_0495 577411 - 578661 + | N-acetylmuramoyl-L-alanine amidase AmiC precursor TERM 607 578860 - 578847 - f 100 -8.1 -6.02919 | opp_overlap 578847 CCAGAAACAAAAAAA CACCC GATA GGGTG TCTAATGATGATATC TERM 608 580513 - 580490 - g 75 -8.8 -3.86897 | gap 1 TTCACTGCTTATAAA GGT-GGCACGC AGA GCGAGCCTACC AGTAATGATTCGTCA mltA 579383 - 580555 + | murein transglycosylase A TERM 609 580609 - 580594 - f 86 -11.8 -3.14211 | opp_overlap 580594 ATTTGTTTTGATTAA GCGGCC AGTT GGCCGC TTTTGCATGAGTACT TERM 610 580594 - 580609 + F 100 -11.8 -4.20084 | opp_overlap 580594 ATTTGTTTTGATTAA GCGGCC AGTT GGCCGC TTTTGCATGAGTACT TERM 611 581433 - 581444 + G 71 -5.8 -4.31895 | GCAACGATGGTTACT GCCA CGTT TGGC TTTGTTGCTGTGTCT YPA_0497 580698 - 581525 + | hypothetical protein YPA_0498 582004 - 581561 - | hypothetical protein YPA_0499 583443 - 582139 - | cysteine sulfinate desulfinase TERM 612 583699 - 583679 - H 100 -9.7 -6.00086 | ATAGGATAAAAAAAA GCACCGCCA AAA TAACGGTGC TGCATAAAATCACTA TERM 613 583770 - 583752 - H 84 -3.8 -5.54192 | opp_overlap 583755, overlap 583753 583755 AGGAAGTGAAAAAAA GCAGTAGC TTA GCTACTAT GTCTGGCATACCAGA TERM 614 583769 - 583753 - H 72 -7.3 -3.90888 | opp_overlap 583755, overlap 583752 583755 GGAAGTGAAAAAAAG CAGTAGC TTA GCTACTA TGTCTGGCATACCAG YPA_0500 584004 - 584921 + | DNA-binding transcriptional activator GcvA TERM 615 585115 - 585127 + G 100 -9.1 -5.47431 | TAATGCTGATATTTT CCGCT CTG AGCGG TTTTTTCTATGTTGC TERM 616 585384 - 585426 + G 73 -6.2 -4.46404 | opp_overlap 585388 585391, overlap 585388 CTGAGACTGTGGATA TATATCACGCCAGTAGGCGG AGT CTGTTTTCTGGCGGGATGGA TTTTGATGTTGATTG YPA_0501 585087 - 585482 + | hypothetical protein YPA_0502 585475 - 586581 + | putative RNA 2'-O-ribose methyltransferase TERM 617 586627 - 586612 - T 86 -11.8 -3.16154 | opp_overlap 586608 586607 TAACATCATATTTAA GGGGCC TGTT GGCCCC TGAGGTTATTGACAA TERM 618 586708 - 586734 + T 72 -10.1 -2.88849 | gap 1, overlap 586703 586709 TCCATGTAGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 619 586709 - 586735 + T 84 -10.1 -3.82218 | gap 1, overlap 586703 586708 CCATGTAGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 620 586794 - 586817 + T 100 -14.6 -4.90455 | GGGTTTGTCAGCAGT CTGAGGGGCC TATT GGCCCCTTAG TTTTTATGCGTATAT YPA_0503 586987 - 586832 - | hypothetical protein TERM 621 587022 - 587040 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0504 587044 - 588066 + | transposase for insertion sequence IS100 TERM 622 588147 - 588133 - g 77 -11.4 -3.3506 | overlap 588124 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0505 588066 - 588845 + | transposase/IS protein xni 589547 - 588855 - | exonuclease IX TERM 623 589718 - 589731 + r 75 -3.1 -5.1861 | ATTTAAATTTACTCT TGGCA GATT TGTCA TTTTTTGCTGCTCAA YPA_0507 591171 - 589807 - | hypothetical protein TERM 624 590158 - 590135 - G 75 -10.3 -3.42354 | opp_overlap 590135 590133 590138 CAGTTGAAGCTATAA GCATCGCCG GTATTA CGGCGATAC TCTTTCACCAGTGGC TERM 625 590788 - 590776 - G 72 -4.1 -4.90471 | ACGTAAAATAGAAAA GACCA GGT TAGTC AAATGACTGGAGCTC queF 592169 - 591324 - | 7-cyano-7-deazaguanine reductase YPA_0509 592301 - 592852 + | SecY interacting protein Syd TERM 626 593369 - 593392 + F 100 -12.5 -5.24129 | opp_overlap 593369 593366 593365 TATAAAACGAATTGA GGGGTACTG GTAAAA CAGTACCCC TTTTTTGTGCCCAGA TERM 627 593392 - 593369 - f 88 -12.5 -2.67189 | opp_overlap 593369, overlap 593366 593365 TATAAAACGAATTGA GGGGTACTG GTAAAA CAGTACCCC TTTTTTGTGCCCAGA TERM 628 593429 - 593411 - f 100 -16 -4.36914 | opp_overlap 593411 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 629 593411 - 593429 + F 100 -16 -3.07307 | opp_overlap 593411 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0510 593542 - 594000 + | transposase for the IS1541 insertion element TERM 630 594070 - 594110 + F 100 -11.9 -6.17669 | opp_overlap 594081, overlap 594080 594081 AGAGCCTTATAGGCG CATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTG TTTTTTTGTTTTGTT TERM 631 594080 - 594100 + F 100 -12.5 -4.05342 | opp_overlap 594081, overlap 594070 594081 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGTTTTT TERM 632 594099 - 594081 - f 100 -16 -4.8048 | opp_overlap 594080 594070 594081 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTTTT TERM 633 594081 - 594099 + F 100 -16 -2.99545 | opp_overlap 594081, overlap 594080 594070 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTTTT YPA_0511 594254 - 594586 + | hypothetical protein YPA_0512 594586 - 595359 + | tRNA pseudouridine synthase C YPA_0513 595387 - 595836 + | flavodoxin TERM 634 595857 - 595892 + T 86 -12.1 -3.17194 | overlap 595859 ATATCTTGATTTTAT TGCGTATTGTGGCAA GTTTCG TTGTCACAATACGTA TTCGGTTACCGAGGT TERM 635 595859 - 595890 + T 93 -12.5 -3.14878 | overlap 595857 ATCTTGATTTTATTG CGTATTGTGGCAA GTTTCG TTGTCACAATACG TATTCGGTTACCGAG YPA_0514 596315 - 595926 - | hypothetical protein TERM 636 595992 - 596017 + g 80 -2.5 -5.46706 | ATTGGTGACAACACT TTCCAGGTGAC GTAG GTCATCCAGAA TTTTTCTTTTCAAAT TERM 637 596429 - 596409 - R 100 -8.3 -5.53288 | opp_overlap 596409 596408 596406 596411 CGTAAGGCAAAAAAA TAGCGGG TGGTTAG CCCGCTA CTCTTAATCTTAGTC dapD 597263 - 596439 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YPA_0516 600119 - 597438 - | PII uridylyl-transferase TERM 638 598234 - 598244 + g 70 -4.6 -4.65895 | CTATTTTGCATTCCG CGGC GTA GCTG TTTTTCGGTCGCAAA TERM 639 600169 - 600155 - R 100 -12.8 -5.26316 | opp_overlap 600149 600155 GCAGCCCATAAAAAA GCCGGC GGT GCCGGC TTGTCATTATTACTC TERM 640 600155 - 600169 + r 100 -12.8 -3.6216 | opp_overlap 600155, overlap 600149 GCAGCCCATAAAAAA GCCGGC GGT GCCGGC TTGTCATTATTACTC YPA_0517 600970 - 600179 - | methionine aminopeptidase YPA_0519 603136 - 602057 - | hypothetical protein rpsB 601405 - 602130 + | 30S ribosomal protein S2 TERM 641 602123 - 602111 - Gf 76 -7.7 -4.16842 | TTCAGGCGGAAGAAA GCTTC GTA GAAGC TGAATAATAAGTCCG TERM 642 602186 - 602204 + gF 100 -16 -3.74792 | AAATATGTTGGTTAG GGGGGCCT TAT AGGCCCCC TTTGCATATCTAATG tsf 602258 - 603115 + | elongation factor Ts TERM 643 603125 - 603148 + gF 100 -12.4 -4.77165 | opp_overlap 603125 TCTTAATGCTCCAAA TGGGGCCGCC AATA GGCGGTTCCA TTTTATTGTGCCCAG TERM 644 603148 - 603125 - Gf 70 -8 -3.57561 | opp_overlap 603125 TCTTAATGCTCCAAA TGGGGCCGCC AATA GGCGGTTCCA TTTTATTGTGCCCAG TERM 645 603168 - 603186 + FH 100 -16 -3.07307 | opp_overlap 603168 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 646 603186 - 603168 - fH 100 -16 -4.37092 | opp_overlap 603168 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0521 603299 - 603757 + | transposase for the IS1541 insertion element TERM 647 603835 - 603859 + F 88 -9.9 -4.2123 | opp_overlap 603838, overlap 603837 603838 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCACTCGATA TERM 648 603837 - 603857 + F 100 -12.5 -3.70307 | opp_overlap 603838, overlap 603835 603838 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCACTCGA TERM 649 603856 - 603838 - f 100 -16 -4.8048 | opp_overlap 603837 603835 603838 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCACTCG TERM 650 603838 - 603856 + F 100 -16 -2.81702 | opp_overlap 603838, overlap 603837 603835 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCACTCG TERM 651 604417 - 604430 + G 73 -5.3 -4.72986 | TAGCTTGCTGCGTCA TAACC GTGT GGTTA TTTTTGCTGCGGGTA TERM 652 604718 - 604700 - g 71 -5.8 -4.33153 | opp_overlap 604702, overlap 604702 TTCAACATGAATAAA CCCGGCGC TTT GCGTCGTG TGGTGATGGGTGAGA pyrH 604034 - 604759 + | uridylate kinase TERM 653 604959 - 604940 - g 70 -4.4 -4.65895 | gap 1, overlap 604941 604942 GTGCGCATGGAAAAA TGTCTGGAA GCA TTCCAGA-A CCACATTAGTAAAAT frr 604895 - 605452 + | ribosome recycling factor TERM 654 605467 - 605496 + F 100 -11.5 -5.44721 | gap 1, opp_overlap 605473, overlap 605473 ATCTCTACTCGCATT GTATAAGCGTCGCC TTA GGCGGCGCTT-TGC TTTTTTTCCGGTCAT TERM 655 605473 - 605491 + F 100 -13.8 -4.5187 | opp_overlap 605473, overlap 605467 ACTCGCATTGTATAA GCGTCGCC TTA GGCGGCGC TTTGCTTTTTTTCCG TERM 656 605491 - 605473 - f 86 -11.6 -3.32963 | opp_overlap 605467 605473 ACTCGCATTGTATAA GCGTCGCC TTA GGCGGCGC TTTGCTTTTTTTCCG YPA_0524 605666 - 606862 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 657 606997 - 607016 + F 100 -8.6 -5.63504 | gap 1, opp_overlap 606997, overlap 606985 GCTGTCACTCCAGAA GCCGTG-AC TTG GTACACGGC TTTTTTTGTGCACTT TERM 658 607329 - 607341 + G 83 -5.5 -5.06414 | GACCAAGAAGTGACC GCTCT GAT GGAGC TTTTTGTTCGAGCAC YPA_0525 607086 - 607844 + | undecaprenyl pyrophosphate synthetase cdsA 607854 - 608702 + | CDP-diglyceride synthase YPA_0527 608731 - 610086 + | zinc metallopeptidase TERM 659 611133 - 611123 - g 71 -5.4 -4.49311 | overlap 611131 ATGATGACGATAAAA CAGT TAA ACTG CATATCAACGTGGAT YPA_0528 610123 - 612510 + | outer membrane protein assembly factor YaeT TERM 660 613047 - 613029 - g 70 -4.6 -4.6759 | opp_overlap 613024 613029 AAGAGCGTAACAAAA TCCTGA GCCGTAT TCAGGA TGCTGTTAAATCTGT YPA_0529 612617 - 613165 + | periplasmic chaperone TERM 661 613218 - 613250 + G 70 -11.4 -2.63823 | gap 1, overlap 613215 613214 613248 AGTTGGATGCACAGG TGCACGGTGATGGCG ATCT TGTCATCACCG-GCA TCGCTTCTATGCATT lpxD 613169 - 614191 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 662 614314 - 614326 + F 70 -2.7 -5.00616 | overlap 614315 GTGCAGGCCGTGTTG TTGAT AGC ATCAG TTTTTTAGACAGGAA fabZ 614349 - 614879 + | (3R)-hydroxymyristoyl-ACP dehydratase YPA_0532 614883 - 615671 + | UDP-N-acetylglucosamine acyltransferase lpxB 615675 - 616859 + | lipid-A-disaccharide synthase TERM 663 617031 - 617003 - g 80 -2.3 -5.50499 | overlap 617004 617005 617007 GCAGATTCAAAAAAA CTCAGCGAGAAGC GCC GCCTGTCACTGTA TGACGAAATCACTGA rnhB 616856 - 617452 + | ribonuclease HII TERM 664 618516 - 618500 - g 76 -5.1 -4.82901 | overlap 618501 TTTCTGGTAGAAAAA GCCAAAC AAG GTTTGGA AGAACGTTTGGAATT TERM 665 618963 - 618976 + G 71 -6.7 -4.25056 | overlap 618960 TCGGCCGTGTATTAG GCCAT CCCT ATGGC TTTGTTGATCGGATC TERM 666 619785 - 619762 - g 83 -5.2 -5.07486 | opp_overlap 619762, overlap 619764 CATGGGTAAGAAAAA CCCTGCTGAG ATGG CTAAGCAGCG TTCTGTATTTGAAGA TERM 667 620243 - 620233 - g 76 -5.4 -4.8048 | opp_overlap 620233 TGTCGATACCAAAAA GCTT AAC AAGC GTATTTTAGAAAAAC dnaE 617582 - 621097 + | DNA polymerase III subunit alpha TERM 668 621193 - 621165 - g 71 -6.8 -4.27584 | gap 1 AGCTGGAAGCGAAAA TTGACTCGCTGAC TGCA GTCAGCC-GTCAA GACGAAAAATTAGAT TERM 669 621880 - 621857 - g 76 -11 -3.31792 | CCATTAGCCGCAGAA GCGATGGGCA TTAC TGCACATCGC CTAAAAGAACTGAAG YPA_0536 621110 - 622069 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 670 622092 - 622114 + F 100 -5.5 -6.08563 | opp_overlap 622091 622086 622092 GCCAACTGATAAAAG CCGGTGC GGAATTTAA GCGCCGG TTTTTTTTATCTATT YPA_0537 622253 - 622651 + | hypothetical protein TERM 671 623895 - 623915 + G 75 -9 -3.84185 | GGTATTCCCCCATGG CAGCGGGA ACGTA TTCCGCTG TTATATTTCGGTGAA tilS 622653 - 624035 + | tRNA(Ile)-lysidine synthetase YPA_0539 624272 - 624589 + | putative cytochrome TERM 672 624839 - 624804 - T 100 -17 -4.1043 | opp_overlap 624811, overlap 624811 TGTAAATAGGATAAA TGCAAAACGGGCCGCT CTTC AGCGACCCGTTTTTCA CAAGGAAGTGGAAAC TERM 673 624832 - 624811 - T 100 -13.7 -4.40173 | opp_overlap 624811, overlap 624804 AGGATAAATGCAAAA CGGGCCGCT CTTC AGCGACCCG TTTTTCACAAGGAAG TERM 674 624811 - 624832 + T 100 -11.5 -4.56597 | opp_overlap 624811 624804 AGGATAAATGCAAAA CGGGCCGCT CTTC AGCGACCCG TTTTTCACAAGGAAG YPA_0540 625114 - 624854 - | Rho-binding antiterminator YPA_0541 625301 - 625101 - | hypothetical protein TERM 675 625137 - 625152 + g 77 -11.8 -3.08679 | opp_overlap 625135 CACCAATAAGTTAGC GGCGGC ATAG GCCGCC TGTTCCCTAACGGAG TERM 676 626082 - 626057 - g 70 -9.1 -3.6445 | overlap 626058 626060 AGAATAATCTGGAAA TTAGTTTTGCC GAAT GGCAAAACTAC GGGCAATAAGTGTGT TERM 677 626081 - 626058 - g 77 -12.6 -2.77947 | overlap 626057 626060 GAATAATCTGGAAAT TAGTTTTGCC GAAT GGCAAAACTA CGGGCAATAAGTGTG TERM 678 626079 - 626060 - g 70 -10.8 -2.92935 | overlap 626058 626057 ATAATCTGGAAATTA GTTTTGCC GAAT GGCAAAAC TACGGGCAATAAGTG YPA_0542 625543 - 626091 + | hypothetical protein YPA_0543 626070 - 626510 + | hypothetical protein YPA_0544 626595 - 627278 + | lipoprotein involved with copper homeostasis and adhesion TERM 679 627336 - 627301 - T 76 -7.7 -4.23999 | gap 2, opp_overlap 627304 CCATAGCTAAAATAA GAAGCCGCACGGTAG TTCAAGTT CT-CCG-GCGGCTTC ATCAGTAAAATACCC YPA_0545 629130 - 627412 - | prolyl-tRNA synthetase TERM 680 627476 - 627487 + g 86 -5.8 -5.09762 | ATCATTTGTTTCTCA CCGA CGCG TCGG TTTTTGTATTCCACT YPA_0546 629941 - 629234 - | hypothetical protein TERM 681 629865 - 629885 + g 74 -3.9 -4.99645 | overlap 629867 TCCTCAACCAAACCG GGTTGCCGT GGT ACCGCAAAC TTTTCTTTATACGGT rcsF 630345 - 629938 - | outer membrane lipoprotein TERM 682 630430 - 630407 - R 100 -16.8 -3.97674 | opp_overlap 630410, overlap 630410 CTATTATTCAAATAA CAAGACGGGC TATA GCCCGTCTTG TCGATATATTCAATA TERM 683 630427 - 630410 - R 100 -12.7 -4.10744 | opp_overlap 630410, overlap 630407 TTATTCAAATAACAA GACGGGC TATA GCCCGTC TTGTCGATATATTCA TERM 684 630410 - 630427 + r 100 -12.7 -3.42583 | opp_overlap 630407 630410 TTATTCAAATAACAA GACGGGC TATA GCCCGTC TTGTCGATATATTCA metQ 631278 - 630463 - | DL-methionine transporter substrate-binding subunit YPA_0549 631995 - 631342 - | DL-methionine transporter permease subunit TERM 685 631577 - 631588 + g 74 -4.4 -4.79223 | CCGGGCAGGGCTTCT GGTA ATAA TACC TTTTTGATGATCTGC metN 633019 - 631988 - | DL-methionine transporter ATP-binding subunit YPA_0551 633206 - 633772 + | D,D-heptose 1,7-bisphosphate phosphatase YPA_0552 634208 - 634023 - | hypothetical protein TERM 686 636057 - 636020 - H 78 -5.7 -4.7629 | opp_overlap 636014 636020 636023, overlap 636023 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 687 636054 - 636023 - H 78 -7.4 -4.47888 | opp_overlap 636020 636014 636023, overlap 636020 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 688 637512 - 637494 - H 82 -10.3 -3.57798 | overlap 637507 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 689 637972 - 637946 - H 70 -9.4 -2.75844 | opp_overlap 637960 637968, overlap 637945 637948 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 690 638019 - 638008 - H 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 691 639131 - 639141 + H 74 -6.8 -4.27316 | opp_overlap 639131 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 692 639586 - 639566 - H 100 -14.1 -4.14739 | opp_overlap 639566 CCACTTATTGCAAAA CCCTGAATC TTA GATTCAGGG TTTTTTGCATTTATA TERM 693 639566 - 639586 + H 100 -14.1 -5.24449 | opp_overlap 639566 CCACTTATTGCAAAA CCCTGAATC TTA GATTCAGGG TTTTTTGCATTTATA TERM 694 640060 - 640034 - g 71 -5.1 -4.47397 | overlap 640039 ACAAATATATGAAAA TGAAGCGCCTG TTGGT CAGGCAATCCA AGAAAGTGGTATTAA dkgB 639912 - 640715 + | 2,5-diketo-D-gluconate reductase B TERM 695 640740 - 640758 + F 100 -9.6 -5.83211 | AAGACACTGGACGAG CCACCTTA CAT TGAGGTGG TTTTTTATTTTGGTG YPA_0554 640750 - 641214 + | hypothetical protein TERM 696 642247 - 642261 + G 76 -3.4 -5.13354 | overlap 642249 CGCAGTCGTGCGTTC GGCCGG CCT CTGGAC TTTATTTTTTATCGC YPA_0555 641596 - 642357 + | hypothetical protein TERM 697 642384 - 642355 - T 77 -10.9 -2.75481 | opp_overlap 642362, overlap 642362 GTCGAATTCCAACCA TAAAAAAGCACCT CGAA AGGTGCTTTTTGA CAGTGATTCTGGCTC TERM 698 642362 - 642377 + T 100 -9 -4.60889 | opp_overlap 642355 642362 TCCAACCATAAAAAA GCACCT CGAA AGGTGC TTTTTGACAGTGATT TERM 699 642377 - 642362 - T 100 -9 -5.37345 | opp_overlap 642362, overlap 642355 TCCAACCATAAAAAA GCACCT CGAA AGGTGC TTTTTGACAGTGATT YPA_0556 643826 - 642399 - | membrane-bound lytic murein transglycosylase D TERM 700 643028 - 643060 + g 76 -7 -4.58395 | TTATACCGTACTTTT TGCTGTTCTTGAGT AAATC ACCCAAGGCCAGCA TTTTTGGAACATAAA YPA_0557 644614 - 643859 - | putative hydroxyacylglutathione hydrolase TERM 701 644330 - 644365 + g 76 -3.2 -5.07107 | overlap 644326 644332 TTGTCCGGCAATGGT GAGGCTATCGCCAT CATTAACA ATGACGGTGGCCCC TTTTTTCGCAGTTTC TERM 702 645236 - 645210 - g 75 -8.7 -3.9461 | overlap 645211 GCCCTTCAATAAGAA CGGTGGGCACT TTATC AGTACCCACCT GCCTGCGTTGGGATG TERM 703 645235 - 645211 - g 76 -12.2 -2.96444 | overlap 645210 CCCTTCAATAAGAAC GGTGGGCACT TTATC AGTACCCACC TGCCTGCGTTGGGAT YPA_0558 644659 - 645378 + | hypothetical protein rnhA 645897 - 645433 - | ribonuclease H TERM 704 645616 - 645636 + g 74 -2.4 -5.11033 | overlap 645617 645618 GCGCACTGGCTTACG ATCGGCTG TTTTC CAGCCGCG TTTTTTCCAGTTATG YPA_0560 645967 - 646731 + | DNA polymerase III subunit epsilon TERM 705 646931 - 646957 + T 100 -15.3 -4.18303 | opp_overlap 646931 CGCCAAAATTTAGAA GCCCTGAGTTA AGTAA TAACTCAGGGC TTTGTCGTTTCTGCT TERM 706 646957 - 646931 - T 100 -15.3 -3.52113 | opp_overlap 646931 CGCCAAAATTTAGAA GCCCTGAGTTA AGTAA TAACTCAGGGC TTTGTCGTTTCTGCT YPA_0561 648461 - 646977 - | putative permease YPA_0562 648794 - 649033 + | hypothetical protein YPA_0563 649863 - 649084 - | transposase/IS protein TERM 707 649782 - 649796 + g 77 -11.4 -3.3506 | overlap 649795 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0564 650885 - 649863 - | transposase for insertion sequence IS100 TERM 708 650907 - 650889 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_0565 651075 - 650899 - | hypothetical protein TERM 709 651185 - 651211 + H 93 -12.2 -3.71527 | opp_overlap 651185, overlap 651207 TACAGACACAAAAAA GCCCGCAAACCT AGA AGGGATGCGGGC TTTCCGTACTTCACC TERM 710 651211 - 651185 - H 100 -12.2 -5.4492 | opp_overlap 651185 651207 TACAGACACAAAAAA GCCCGCAAACCT AGA AGGGATGCGGGC TTTCCGTACTTCACC TERM 711 651481 - 651464 - H 80 -9.9 -3.58305 | opp_overlap 651463 651461 AATCAACTTGCGAAA TGTAGCC TAAA GGCTACA ATATATTGATGAAAA YPA_0566 651490 - 651807 + | putative prophage protein TERM 712 652074 - 652063 - g 74 -4.4 -4.88228 | opp_overlap 652063 ATCCAACACTAAAAA CACT GCTT AGTG TGGTATCTGCAACGG YPA_0567 651813 - 652127 + | putative DNA-binding prophage protein YPA_0568 653564 - 652476 - | putative regulatory prophage protein YPA_0569 654520 - 653561 - | putative prophage DNA primase YPA_0570 655055 - 654513 - | putative prophage protein YPA_0571 655255 - 655055 - | transcriptional regulator YPA_0572 656135 - 655248 - | putative DNA-binding prophage protein YPA_0573 656480 - 656157 - | hypothetical protein TERM 713 657187 - 657145 - g 76 -7.1 -4.57569 | opp_overlap 657151 CTAGCCTGCCAAAAA GAGCACTGCATGCATAT AGTGCATGA ATTTGCATGCAACGCCC CGGCTAAAACAACTG YPA_0574 656943 - 657170 + | hypothetical protein YPA_0575 659002 - 657332 - | hypothetical protein TERM 714 657720 - 657730 + g 70 -2.6 -4.91357 | TTAGATATGTCAACG TTAA CTT TTAA TTTTGTTATGTATTT TERM 715 658033 - 658055 + g 73 -3.4 -5.055 | TTATTCCGTTGACTT CTGACTCTAA GGA TTCGAGTTGG TTTTTTGCAAGTTCC TERM 716 658221 - 658236 + g 83 -5.4 -5.09173 | overlap 658217 658223 TTGGCTAATTTGATT TGCGAC TCAA GTCGTA TTTTTTCAACTCTTA TERM 717 658260 - 658274 + g 100 -5 -6.47325 | overlap 658267 ACTCTTAAGTTAGTT CTTTCT TCA AGAAGG TTTTTTTTGTTTTTT TERM 718 658267 - 658283 + g 89 -2.3 -5.73339 | overlap 658260 AGTTAGTTCTTTCTT CAAGAAG GTT TTTTTTG TTTTTTTCTGATTCT TERM 719 658848 - 658834 - G 76 -4.2 -5.03747 | overlap 658836 AAACCTCGGAAAAAA TGGGCT CAC AGCCAA AAGTCCAAAAAATCA YPA_0576 660141 - 659053 - | hypothetical protein TERM 720 659728 - 659740 + g 73 -6.3 -4.47707 | opp_overlap 659727 CAGTTTATATGAAGC CAAGT TTA ACTTG TTGTTTTTAGTGAGG YPA_0577 661419 - 660220 - | putative prophage integrase TERM 721 661345 - 661331 - G 73 -2.8 -4.92756 | opp_overlap 661337, overlap 661335 ACTAGCAAAAATAAA CCATCA CCA TCATGG AGGGTTAGGTCTTTG TERM 722 661575 - 661531 - R 95 -12.9 -2.96216 | opp_overlap 661544, overlap 661537 661541 661543 661544 TTGGACTACTACAGA CACAAATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATGCG CCTATAAGGCTCTGT TERM 723 661569 - 661537 - R 100 -11.3 -4.18367 | opp_overlap 661544, overlap 661531 661541 661543 661544 TACTACAGACACAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 724 661565 - 661541 - R 100 -9.9 -4.66625 | opp_overlap 661544, overlap 661537 661531 661543 661544 ACAGACACAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 725 661563 - 661543 - R 100 -12.5 -3.92887 | opp_overlap 661544, overlap 661541 661537 661531 661544 AGACACAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 726 661562 - 661544 - R 100 -16 -2.94105 | opp_overlap 661544, overlap 661543 661541 661537 661531 GACACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 727 661544 - 661562 + r 100 -16 -4.8048 | opp_overlap 661543 661541 661537 661531 661544 GACACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_0578 662101 - 661643 - | transposase for the IS1541 insertion element TERM 728 662214 - 662232 + r 100 -16 -4.36914 | opp_overlap 662214 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 729 662232 - 662214 - R 100 -16 -3.07307 | opp_overlap 662214 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 730 662251 - 662277 + r 93 -12.2 -3.71527 | opp_overlap 662251, overlap 662273 TCTGGGCACAAAAAA GCCCGCAAACCT AGA AGGGATGCGGGC TTTCCGTACTTCACC TERM 731 662277 - 662251 - R 100 -12.2 -5.24129 | opp_overlap 662251 662273 TCTGGGCACAAAAAA GCCCGCAAACCT AGA AGGGATGCGGGC TTTCCGTACTTCACC smpB 663230 - 662736 - | SsrA-binding protein YPA_0580 663379 - 663813 + | hypothetical protein YPA_0581 663806 - 664090 + | hypothetical protein TERM 732 664109 - 664087 - T 78 -4.1 -5.1101 | opp_overlap 664088, overlap 664088 664091 TGAGCAGGCAAAAAA GTAAGGCAC AATCA GCGCCTTAT TTTTTGTTGTCACTC TERM 733 664088 - 664108 + T 87 -5.4 -5.56673 | opp_overlap 664087 664088 664091 GAGCAGGCAAAAAAG TAAGGCAC AATCA GCGCCTTA TTTTTTGTTGTCACT TERM 734 664108 - 664088 - T 70 -7.6 -3.65883 | opp_overlap 664088, overlap 664087 664091 GAGCAGGCAAAAAAG TAAGGCAC AATCA GCGCCTTA TTTTTTGTTGTCACT YPA_0582 664581 - 664240 - | hypothetical protein TERM 735 664309 - 664325 + g 76 -3 -5.14563 | ATCAAAGGTCAACGT TAACGT TTGTT GCGTTA TTTTTTCGTGACCAG YPA_0583 666356 - 664695 - | recombination and repair protein ppnK 667324 - 666443 - | inorganic polyphosphate/ATP-NAD kinase YPA_0585 667448 - 668026 + | heat shock protein GrpE TERM 736 668061 - 668045 - T 85 -9.4 -4.19238 | GCTCTAACGTTAAAA GGCACC TCAAC GGTGCC TCAAATTGCTAACAA TERM 737 668073 - 668104 + T 79 -10.9 -3.09823 | opp_overlap 668078, overlap 668067 668078 TGCCTCAAATTGCTA ACAAAGTCCTGGC CTCCTA GCCGGGACTTTGC TCTAATTTTACGCGG TERM 738 668078 - 668099 + T 83 -9.4 -3.92694 | opp_overlap 668078, overlap 668073 668067 CAAATTGCTAACAAA GTCCTGGC CTCCTA GCCGGGAC TTTGCTCTAATTTTA TERM 739 668099 - 668078 - T 76 -7.9 -4.19371 | opp_overlap 668078 668073 668067 CAAATTGCTAACAAA GTCCTGGCC TCCT AGCCGGGAC TTTGCTCTAATTTTA gltA 669414 - 668134 - | type II citrate synthase sdhC 670124 - 670513 + | succinate dehydrogenase cytochrome b556 large membrane subunit sdhD 670507 - 670854 + | succinate dehydrogenase cytochrome b556 small membrane subunit TERM 740 671576 - 671607 + G 74 -11.6 -3.18264 | gap 1, opp_overlap 671561 671568, overlap 671578 TGGAAATGTGGCAGT TCCACCCG-ACCGGT ATT GCCGGTGCGGGTGTA TTAGTGACTGAAGGC TERM 741 671578 - 671605 + G 86 -14.2 -3.1552 | gap 1, opp_overlap 671561 671568, overlap 671576 GAAATGTGGCAGTTC CACCCG-ACCGGT ATT GCCGGTGCGGGTG TATTAGTGACTGAAG sdhA 670855 - 672621 + | succinate dehydrogenase flavoprotein subunit sdhB 672671 - 673387 + | succinate dehydrogenase iron-sulfur subunit TERM 742 673547 - 673526 - f 84 -11.6 -3.16683 | opp_overlap 673526 ATGTGAGTTTATTAA CCCGGAGA GGGGAT TCTCCGGG TAGCTTCACGGTAGG TERM 743 673526 - 673547 + F 86 -12.3 -2.53263 | opp_overlap 673526 ATGTGAGTTTATTAA CCCGGAGAG GGGA TTCTCCGGG TAGCTTCACGGTAGG TERM 744 673650 - 673636 - f 70 -7.1 -3.75378 | AGGTCCATAACAGAA CGTGC ATTGA GCACG TCGAGTGAACCGTTT TERM 745 673802 - 673829 + G 76 -6.4 -4.68994 | gap 1, opp_overlap 673802, overlap 673805 GGCGGGCGCGAACCA GTCCTACATAGAG CAG CTCTATGAA-GAC TTTTTAACTGATCCT TERM 746 674302 - 674286 - g 83 -5.1 -5.12971 | opp_overlap 674286 674284, overlap 674287 AACACCGAAGAAAAA CGCTG GATTCAG CAGCG TATTGAATCGGTTGT TERM 747 675422 - 675405 - g 74 -8.3 -4.08919 | AAAGTTGAAATGAAA CGCCTGC AAGA GCTGGCG CGTCGGATCAGCTCT kgd 673743 - 676550 + | alpha-ketoglutarate decarboxylase YPA_0592 676580 - 677803 + | dihydrolipoamide acetyltransferase TERM 748 677888 - 677875 - f 70 -9.5 -2.81045 | overlap 677872 TTATCCAGAACACTA CGGGC TTCG GCCCG TCTCAGACCTTATAT TERM 749 678170 - 678156 - g 74 -2.1 -5.08824 | overlap 678157 TGGCTAGGTAAAAAA CTGGT CACTT ACCAA ACAGATGCCAACGGA sucC 677916 - 679082 + | succinyl-CoA synthetase subunit beta YPA_0594 679082 - 679954 + | succinyl-CoA synthetase subunit alpha TERM 750 680001 - 680018 + F 100 -12.7 -5.252 | opp_overlap 679999 CTAACGCGACATACT GGCCACC TTTT GGTGGCC TTTTTTATACAAATG TERM 751 680256 - 680240 - f 70 -3.7 -4.7889 | overlap 680248 ATAAATATGTAAAAA TCAAAAC TGT GATTTGA CTCACTCTGAATTTA TERM 752 680459 - 680480 + F 70 -8.1 -3.62046 | opp_overlap 680458 680459 CATATAGGCTTAAAT TGTCGTAGA TCAA TTTACGACA TTGTTACCAAAATGC TERM 753 680765 - 680781 + G 76 -5.1 -4.87786 | ACAGTTTGCCTTAAC GGCAATG TAC CATTTCC TTTTTGTCCCATTAA YPA_0595 680721 - 682289 + | cytochrome D ubiquinol oxidase subunit I TERM 754 682448 - 682429 - g 82 -7.2 -4.60487 | opp_overlap 682429 TATCATCGGTAAAAA TGATACAG AGCG CCGTATCA TGATTAACTCGATTG YPA_0596 682304 - 683443 + | cytochrome D ubiquinol oxidase subunit II TERM 755 683615 - 683631 + G 80 -10.8 -3.69323 | opp_overlap 683615 CGAATTAATGGATAA GGGCCC ATTGA GGGCCC TTTCACTGGTGCTCG TERM 756 683631 - 683615 - g 75 -10.8 -3.45134 | opp_overlap 683615 CGAATTAATGGATAA GGGCCC ATTGA GGGCCC TTTCACTGGTGCTCG YPA_0597 683535 - 683867 + | hypothetical protein TERM 757 683887 - 683914 + F 76 -7 -4.57218 | opp_overlap 683885, overlap 683890 683891 CCTTGAGCACAATCC TACCTATGGGCC ATCC GGCCCATAATTA TTTTCGTTCTATTCT TERM 758 683890 - 683911 + F 86 -8.7 -4.36586 | opp_overlap 683885, overlap 683887 683891 TGAGCACAATCCTAC CTATGGGCC ATCC GGCCCATAA TTATTTTCGTTCTAT TERM 759 683891 - 683910 + F 86 -12.2 -3.20325 | opp_overlap 683885, overlap 683890 683887 GAGCACAATCCTACC TATGGGCC ATCC GGCCCATA ATTATTTTCGTTCTA YPA_0598 683999 - 684400 + | acyl-CoA thioester hydrolase YbgC YPA_0599 684400 - 685086 + | colicin uptake protein TolQ YPA_0600 685099 - 685527 + | colicin uptake protein TolR TERM 760 686055 - 686042 - g 76 -3.1 -5.11254 | AACAACAAAAACAAA TCGCT GAAC AGCAA AAGCAGGCCGCTGAA TERM 761 686240 - 686221 - g 76 -3.4 -5.15969 | overlap 686224 GCTGAAGCCAAAAAA GAAGCTGC TGTT GCCGCTGC GGCGAAGAAACAAGC TERM 762 686357 - 686347 - g 80 -2.4 -5.38047 | GATGCAGAGAAAAAA GCCG CTG CTGC TAAAAAAGTTGCTGC TERM 763 686417 - 686395 - g 100 -9 -5.46657 | opp_overlap 686414 686416, overlap 686367 686397 GAGGCCAAGAAAAAA GCGGCAGCAG AAG CGGCTGCCTC AACGGATGTTGATGA TERM 764 686415 - 686397 - g 70 -10.2 -2.91061 | opp_overlap 686414, overlap 686367 686395 GGCCAAGAAAAAAGC GGCAGCAG AAG CGGCTGCC TCAACGGATGTTGAT TERM 765 686487 - 686463 - g 73 -5.1 -4.70879 | gap 1 GGCAAACGCTAAAAA TGCA-CCGAA GAGTGG TTCGGGTGCA GGTGCCGCTGCTGCC tolA 685624 - 686805 + | cell envelope integrity inner membrane protein TolA tolB 686925 - 688217 + | translocation protein TolB YPA_0603 688268 - 688774 + | peptidoglycan-associated outer membrane lipoprotein YPA_0604 688784 - 689593 + | hypothetical protein TERM 766 689603 - 689637 + F 100 -14.4 -4.0162 | CTTTAGCTTTTTTGA GCCCAGGATTTAGTCA ATT TGACTGATTTCTGGGC TTTATCGTGTGAAGA TERM 767 690082 - 690067 - f 73 -9 -3.5399 | overlap 690070 AGCAGAGCGAGACAA CAACGC GCCA GCGTTG ACCCGAAGGGCGAGT TERM 768 690317 - 690327 + F 70 -5.4 -4.54026 | opp_overlap 690302, overlap 690302 690301 TTTGGCGACTTTTTG CCAA ATA TTGG TTATTTTGTTTAGGA TERM 769 691208 - 691224 + G 76 -4.4 -5.02074 | gap 1 GAAAACGTTAATTGT TGCCACC GATC GG-GGCA TTTTTTACAAGATGC YPA_0605 690429 - 691490 + | quinolinate synthetase YPA_0606 691612 - 692337 + | intergral membrane NMN transport protein PnuC YPA_0607 693390 - 692452 - | zinc transporter ZitB TERM 770 694262 - 694240 - g 70 -9 -3.51411 | opp_overlap 694249 694250, overlap 694236 ACTCGTCGAAATTAA CGACAGCGGG TTA CCGGCCGCCG GTGAGTTTTTGGATA TERM 771 694249 - 694267 + G 73 -5.2 -4.72333 | opp_overlap 694240 694236, overlap 694250 AATTAACGACAGCGG GTTACCGG CCG CCGGTGAG TTTTTGGATATGATT TERM 772 694415 - 694399 - g 86 -8.7 -4.56597 | CGTTGGTTTTAAAAA TGGTACC GAC GGCACCA TTAAAGTGGCTATTG TERM 773 694447 - 694461 + G 71 -5.7 -4.33417 | opp_overlap 694441 TGCGATCAACGCGGC CAGTG CCCCA CACTG TTTCTTGTCGGTGAC YPA_0608 693839 - 694855 + | phospho-2-dehydro-3-deoxyheptonate aldolase YPA_0609 695644 - 694865 - | transposase/IS protein TERM 774 695563 - 695577 + g 77 -11.4 -3.3506 | overlap 695576 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0610 696666 - 695644 - | transposase for insertion sequence IS100 TERM 775 696688 - 696670 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 776 696825 - 696851 + G 84 -10.9 -4.08887 | opp_overlap 696820 GGGGTATAATTTGGT CGCATCGGC GACAGATGG GCCGATGCG TTTGATTTCCGTGGT YPA_0611 696736 - 697287 + | D-alanyl-D-alanine carboxypeptidase TERM 777 697457 - 697402 - T 100 -14.3 -4.60255 | opp_overlap 697409 697420, overlap 697409 697420 ATAAGTCCTTAAAAA TCCATAACATCCTAAAAAGCGCGAT GTGACT ATCGCGCTTTTTAGGATGTTTCTCA GGGGATAAGCTACAG TERM 778 697450 - 697409 - T 100 -23.4 -3.5616 | opp_overlap 697409 697420, overlap 697402 697420 CTTAAAAATCCATAA CATCCTAAAAAGCGCGAT GTGACT ATCGCGCTTTTTAGGATG TTTCTCAGGGGATAA TERM 779 697409 - 697450 + T 100 -24.1 -3.86346 | opp_overlap 697409 697402 697420, overlap 697420 CTTAAAAATCCATAA CATCCTAAAAAGCGCGATG TGAC TATCGCGCTTTTTAGGATG TTTCTCAGGGGATAA TERM 780 697439 - 697420 - T 100 -9.3 -4.67556 | opp_overlap 697409 697420, overlap 697409 697402 ATAACATCCTAAAAA GCGCGAT GTGACT ATCGCGC TTTTTAGGATGTTTC TERM 781 697420 - 697439 + T 100 -10 -4.6856 | opp_overlap 697420 697409 697402, overlap 697409 ATAACATCCTAAAAA GCGCGATG TGAC TATCGCGC TTTTTAGGATGTTTC TERM 782 697690 - 697658 - T 90 -5.6 -5.54403 | gap 1, overlap 697661 AAAAAAGAAGAAAAA TAACAGGCTGGCC GTGGAAGT GGCCAGCCTGG-A GCGGTTAATCAAACG TERM 783 697688 - 697661 - T 100 -14.2 -4.74161 | overlap 697658 AAAGAAGAAAAATAA CAGGCTGGCC GTGGAAGT GGCCAGCCTG GAGCGGTTAATCAAA YPA_0612 699028 - 697727 - | serine transporter TERM 784 697911 - 697925 + g 74 -10 -3.59979 | AATGTTTCGATCATC CCCAAG ATA CTTGGG TTTAAGGTCGCGACA TERM 785 698258 - 698237 - G 78 -9.5 -3.82486 | opp_overlap 698239 ACTGAAGACGAAGAA CATGACGGT GATA ACCATCATG ATGTGGGCAAAGCTC TERM 786 699968 - 699955 - R 70 -3.9 -4.83615 | opp_overlap 699955 GATTCTGTATAAAAA TAATC TATG GATTA TTTGCCAACATAGCG YPA_0613 700892 - 700128 - | DNA-binding transcriptional repressor DeoR TERM 787 700981 - 700954 - R 100 -11.4 -4.36554 | CAGTACGATAATAAA TAAGCCCGGT AATTGTGG ACCGGGCTTA GACTACTGACAAAAT YPA_0614 701793 - 701122 - | deoxyribose-phosphate aldolase TERM 788 702025 - 702001 - R 100 -15.1 -2.91264 | GGGCGCATGGAGAGA TTGCCGGTCAG AGA CTAACCGGCAA GTGTGAAGCGAATAC YPA_0615 702626 - 702051 - | undecaprenyl pyrophosphate phosphatase YPA_0616 703471 - 702656 - | hypothetical protein TERM 789 702762 - 702774 + g 75 -9.1 -3.90744 | opp_overlap 702762 TTATGAGTAAGAAAA TGCGC CCC GCGCA TTATTTGACCGAAAC TERM 790 702774 - 702762 - G 90 -9.1 -4.73613 | opp_overlap 702762 TTATGAGTAAGAAAA TGCGC CCC GCGCA TTATTTGACCGAAAC YPA_0617 705492 - 703804 - | hypothetical protein TERM 791 704987 - 704970 - G 74 -7.7 -4.18197 | AGCGCGCACCTAAAA TCAGGCT AACC AGCCCGA TAAGATAAGTCAGGG TERM 792 705845 - 705861 + r 95 -12.3 -3.33492 | opp_overlap 705845 CCAGCAATAAAGAAA GGGTGTC TTG GACACCC TTATCGGATAAATGC TERM 793 705861 - 705845 - R 100 -12.3 -4.70887 | opp_overlap 705845 CCAGCAATAAAGAAA GGGTGTC TTG GACACCC TTATCGGATAAATGC grxA 706165 - 705902 - | glutaredoxin 1 TERM 794 706001 - 706014 + g 76 -4.5 -5.03314 | overlap 705991 705990 TGGCACGGTTTCAAC CGGTT TACC GACCG TTTTTTCCAGATCAG YPA_0619 706628 - 706942 + | hypothetical protein TERM 795 706991 - 706965 - f 76 -9.5 -3.41013 | TAAGCACATTGAGAA TATCTAAGCCG AGGAA CGGCCCAGATA TCAAATTAGTCGGGA YPA_0620 707084 - 707569 + | hypothetical protein TERM 796 707628 - 707664 + F 71 -5 -4.74013 | gap 1, opp_overlap 707630 707632 707634, overlap 707631 707632 GAACGTGTCCGAATA AAGACAGTGTGCCGCAG ATAT CAGCGGCACGCGG-CTA TTTTCTCTATTTACG TERM 797 707631 - 707662 + F 74 -7.8 -3.97364 | opp_overlap 707630 707632 707634, overlap 707628 707632 CGTGTCCGAATAAAG ACAGTGTGCCGCAG ATAT CAGCGGCACGCGGC TATTTTCTCTATTTA TERM 798 707632 - 707661 + F 83 -11.3 -2.96792 | opp_overlap 707632 707630 707634, overlap 707631 707628 GTGTCCGAATAAAGA CAGTGTGCCGCAG ATAT CAGCGGCACGCGG CTATTTTCTCTATTT TERM 799 707661 - 707632 - f 75 -9.1 -3.6761 | opp_overlap 707631 707628 707632, overlap 707630 707634 GTGTCCGAATAAAGA CAGTGTGCCGCAG ATAT CAGCGGCACGCGG CTATTTTCTCTATTT TERM 800 707659 - 707634 - f 80 -10.3 -3.41738 | opp_overlap 707632 707631 707628, overlap 707632 707630 GTCCGAATAAAGACA GTGTGCCGCAG ATAT CAGCGGCACGC GGCTATTTTCTCTAT TERM 801 708429 - 708416 - g 70 -2.3 -4.98857 | opp_overlap 708417, overlap 708417 ACCGAATGAGAAAAA TCTCG ACCC CGAGT TACTGGCGCTGGTCA TERM 802 708708 - 708718 + G 71 -6.8 -4.25458 | opp_overlap 708703 GCCGATTACACGGGC TCCG CGA CGGA TTTATTGCTGAAGTT YPA_0621 708087 - 709196 + | putrescine ABC transporter periplasmic substrate-binding protein potG 709367 - 710500 + | putrescine transporter ATP-binding subunit YPA_0623 710525 - 711490 + | putrescine ABC transporter membrane protein YPA_0624 711487 - 712332 + | putrescine ABC transporter membrane protein TERM 803 712366 - 712389 + F 100 -15.4 -3.30124 | overlap 712369 GTCTTTCGTCTCCTT TAACGCCGCT TTAG AGCGGCGTTA TTGTGAGAGATAACA TERM 804 712369 - 712386 + F 100 -12.7 -3.7941 | overlap 712366 TTTCGTCTCCTTTAA CGCCGCT TTAG AGCGGCG TTATTGTGAGAGATA YPA_0625 712457 - 712921 + | hypothetical protein TERM 805 713024 - 713039 + G 82 -10.4 -3.83226 | opp_overlap 713024 ATTGCGCACAGTATA CGGCAG GTCG CTGCCG TTCTTGTCAGTGGTT TERM 806 713590 - 713578 - g 73 -9.1 -3.67597 | opp_overlap 713584, overlap 713581 CCGCTGACCGAACAA CAGGC CCT GCCTG AGCGGTTTAATCAGG rumB 713005 - 714135 + | 23S rRNA methyluridine methyltransferase YPA_0627 714993 - 714262 - | hypothetical protein TERM 807 715443 - 715459 + H 71 -6.7 -4.21974 | opp_overlap 715450, overlap 715450 715451 CTGGTATTAGCATGG TGATAAT TTC ATTATCA TTTGTTAAATGATAA YPA_0628 715812 - 716738 + | SPFH domain-containing protein TERM 808 716767 - 716802 + F 100 -11.8 -5.35459 | opp_overlap 716763 ATCAATAAATCTGAA GCCCACTTCCCCATGG AGAT TCGTGGTGTAGTGGGC TTTTTTATCATCTGT TERM 809 717885 - 717906 + G 72 -3.7 -4.82901 | CGCGCAGAGTATGTG TTATCTCAG AAAC CCGAGGTAA TTTTTCTGGCGGGCG TERM 810 718087 - 718098 + G 70 -3 -4.89393 | GCGGCGTCCGCACGT TGTA CGAC TACA TTTTTGTGCAGTTTG YPA_0629 717150 - 718241 + | putative periplasmic binding protein YPA_0630 718395 - 719297 + | FecCD transport family protein TERM 811 720016 - 720006 - g 70 -8.2 -3.70919 | TCGAAAGTGGAACAA GCCC TTT GGGC TATCGCTACTTATTG YPA_0631 719294 - 720079 + | putative transport ATP-binding protein TERM 812 720821 - 720808 - gf 70 -8.1 -3.73775 | opp_overlap 720807 720813 CGCACCGCCAGTAAA CCGGT GACC ACCGG GCTTTATGACCTTAT YPA_0632 720067 - 720864 + | hypothetical protein YPA_0633 720827 - 722227 + | hypothetical protein YPA_0634 722224 - 723069 + | hypothetical protein YPA_0635 723243 - 723094 - | hypothetical protein TERM 813 723232 - 723198 - G 86 -12.2 -3.90112 | opp_overlap 723197 723196 GGGGCGTTAAGGAAA CCGGATCATCACGCAA TTT CTGGTTGATGATCCGG CGTTGTCGCATAAGG artM 723927 - 723259 - | arginine transporter permease subunit ArtM YPA_0637 724643 - 723927 - | arginine transporter permease subunit ArtQ TERM 814 724624 - 724589 - G 82 -10.4 -3.89346 | gap 1, opp_overlap 724595, overlap 724590 GTGCCAGTGCACAAA CGGCAAG-GCCGACGGT CAT ACCGGCGGCACTTGCTA AAGGTTGAAATTCAT TERM 815 724623 - 724590 - G 76 -11.7 -2.93393 | gap 1, opp_overlap 724595, overlap 724589 TGCCAGTGCACAAAC GGCAAG-GCCGACGGT CAT ACCGGCGGCACTTGCT AAAGGTTGAAATTCA YPA_0638 725386 - 724655 - | arginine-binding periplasmic protein 1 precursor artP 726135 - 725407 - | arginine transporter ATP-binding subunit TERM 816 726399 - 726371 - R 78 -8.8 -3.89354 | TTTGTAAATCAATAA GTACCGGGCCAC GGGAA GGAACCCGGTAC GAAAGATGTGTGGCC YPA_0640 726990 - 726430 - | chorismate mutase YPA_0641 727023 - 727133 + | hypothetical protein YPA_0642 727735 - 727160 - | putative lipoprotein YPA_0643 728839 - 727832 - | hypothetical protein TERM 817 728646 - 728656 + g 71 -6.8 -4.2349 | AGCGTATCGACATCC GCCA GCA TGGC TTTTGCCTGTGAGGA YPA_0644 730429 - 728939 - | hypothetical protein YPA_0645 731481 - 730426 - | L-threonine aldolase YPA_0646 731687 - 731478 - | hypothetical protein YPA_0647 733515 - 731794 - | pyruvate dehydrogenase TERM 818 731986 - 731971 - G 70 -9 -3.58343 | opp_overlap 731964 GCCAGGATGTGCAAA GGCACT TTCC AGTGCC GCATTTAACTCAGAG YPA_0648 734681 - 733659 - | HCP oxidoreductase, NADH-dependent TERM 819 734780 - 734746 - R 76 -10 -3.39288 | overlap 734734 734744 CAGCGTGCAATAATA GCCCGGTCAACGGC GAGAAAG GCGATTGACCAGGC AAGGTATAATTAACT YPA_0649 736447 - 734795 - | hydroxylamine reductase TERM 820 736253 - 736241 - G 70 -3.3 -4.83615 | overlap 736242 CAGCGTTGAGAAAAA TGCTC TGG GGGCA AAGCTGTCAATTTGG TERM 821 736618 - 736606 - R 76 -6.9 -4.44548 | overlap 736607 TATAGGGAAGGAAAA GCCCC CAG AGGGC GGGGGGGGGCGACTG YPA_0650 737545 - 736649 - | hypothetical protein TERM 822 738223 - 738209 - g 76 -5.7 -4.72201 | opp_overlap 738209 GTGGATAAAAAATAA CGATG GGTTA CATCG TATCTACTATCGAGT TERM 823 738747 - 738735 - g 83 -9.1 -4.42238 | TTATTGCAAGCAAAA GGCTC ACT GAGCC TCGATCCTCATGCCC TERM 824 739310 - 739327 + G 78 -2.6 -5.24129 | CCTAACAATTTTGCC TGCACC CGATAT GGAGCA TTTTTTATACCGCGC YPA_0651 737898 - 739565 + | hypothetical protein YPA_0652 740649 - 739702 - | putative virulence factor YPA_0653 740853 - 740677 - | hypothetical protein YPA_0654 740886 - 741998 + | macrolide transporter subunit MacA YPA_0655 741998 - 743947 + | macrolide transporter ATP-binding /permease protein TERM 825 744125 - 744092 - T 100 -11.2 -4.63007 | opp_overlap 744098, overlap 744098 TAGAAGTAGATAAAA TAAAAATGCCAGTC GTCATT GACTGGCATTTTGA ATCAAAGTACAGGTA TERM 826 744119 - 744098 - T 100 -10.2 -5.58522 | opp_overlap 744098, overlap 744092 TAGATAAAATAAAAA TGCCAGTC GTCATT GACTGGCA TTTTGAATCAAAGTA TERM 827 744098 - 744119 + T 93 -10.9 -4.18494 | opp_overlap 744098 744092 TAGATAAAATAAAAA TGCCAGTCG TCAT TGACTGGCA TTTTGAATCAAAGTA YPA_0656 744491 - 744228 - | cold shock-like protein TERM 828 744458 - 744444 - G 82 -8.6 -4.44046 | opp_overlap 744444 744443 CTCAGGGCAAATAAA GCCAAA ACC TTTGGC GTTGTTGAACCATTT TERM 829 744930 - 744907 - g 76 -6 -4.73432 | gap 1, opp_overlap 744907 744911 TCAAAGATAAACAAA TCG-AGGCGCT TCA ACCGCCTTCGA TGTATAAAGTGATAC clpS 744852 - 745172 + | ATP-dependent Clp protease adaptor protein ClpS TERM 830 745179 - 745167 - f 71 -4.8 -4.58395 | TGTACGCTGGAAAAA GCCT GATTA AGGC AATTATTGGGAGGTG clpA 745198 - 747474 + | ATP-dependent Clp protease ATP-binding subunit TERM 831 747615 - 747588 - f 100 -11.4 -4.7261 | gap 1, opp_overlap 747588 ATCCAGTAAAATAAA GGGCGATA-GCTA AAA CAGCGTATCGCCC TTTTTATTGTGCCCA TERM 832 747588 - 747615 + F 100 -10.7 -5.18726 | gap 1, opp_overlap 747588 ATCCAGTAAAATAAA GGGCGATA-GCT AAAAC AGCGTATCGCCC TTTTTATTGTGCCCA TERM 833 747636 - 747654 + F 100 -16 -3.07307 | opp_overlap 747636 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 834 747654 - 747636 - f 100 -16 -4.37092 | opp_overlap 747636 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0659 747767 - 748225 + | transposase for the IS1541 insertion element TERM 835 748303 - 748327 + T 88 -9.9 -4.15788 | opp_overlap 748306, overlap 748305 748306 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGCCAACGTT TERM 836 748305 - 748325 + T 100 -12.5 -3.6761 | opp_overlap 748306, overlap 748303 748306 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGCCAACG TERM 837 748306 - 748324 + T 100 -16 -2.80244 | opp_overlap 748306, overlap 748305 748303 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCCAAC TERM 838 748324 - 748306 - T 100 -16 -4.8048 | opp_overlap 748306 748305 748303 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCCAAC TERM 839 748538 - 748513 - T 100 -13.3 -4.36778 | overlap 748507 AAAGATAACGCAAAA CGCCCTTGCCA TAAA TGGGAAGGGCG CCGGAGGGGGACTAC infA 748815 - 748597 - | translation initiation factor IF-1 aat 749690 - 748905 - | leucyl/phenylalanyl-tRNA--protein transferase YPA_0662 751633 - 749909 - | cysteine/glutathione ABC transporter membrane/ATP-binding component YPA_0663 753402 - 751636 - | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 840 751802 - 751824 + g 73 -9 -3.72893 | AGCAGGGTAGACTGC GCACGGGAGG CCT CCTCCAGCGC TTTCATCACCAACTG TERM 841 752555 - 752534 - G 78 -3.7 -5.19212 | gap 1, overlap 752535 752542 ATTAGCACCAAAAAA CCGGCA-AAC AGC GTTACGCCGA GGCCATAGCTACCAA TERM 842 753342 - 753353 + g 87 -7.2 -5.04249 | overlap 753333 GGCGGAGCCAACGTT GCGC GGGG GCGC TTTGTTTTTTCAGCC TERM 843 753803 - 753779 - R 100 -9.2 -5.53079 | overlap 753780 AAAACAGATAAAAAA GCGGGTGGCC CATGT AGCCACCCGT ATAGAACGAGGTGAA TERM 844 753802 - 753780 - R 100 -12.7 -3.88187 | overlap 753779 AAACAGATAAAAAAG CGGGTGGCC CATGT AGCCACCCG TATAGAACGAGGTGA YPA_0664 754823 - 753861 - | thioredoxin reductase TERM 845 754714 - 754730 + g 70 -8 -3.66178 | opp_overlap 754727 CCGCCCTTTTCCATC CCGGTA ATCAA TACCGG TTTCAGGTTGGCACG TERM 846 754910 - 754890 - H 90 -4 -5.59357 | opp_overlap 754890 ATGACATTAAAAAAA GCAAACAA AAATG TTGTTAGC AATTTTTTTGATAGG TERM 847 755903 - 755886 - g 70 -4.2 -4.65895 | TGCCGCAGTTAAAAA TCTTGA GGAAAT TCAAGA GTGTCACTTGGTCTC YPA_0665 755590 - 756084 + | leucine-responsive transcriptional regulator TERM 848 756142 - 756168 + F 100 -15.2 -3.14463 | opp_overlap 756138, overlap 756145 TTATTCATACAGTTT CAACGCCGGGGA GGC TTCTCGGCGTTG TTGCTCAGACCCGTT TERM 849 756145 - 756165 + F 84 -11.1 -3.71848 | opp_overlap 756138, overlap 756142 TTCATACAGTTTCAA CGCCGGGGA GGC TTCTCGGCG TTGTTGCTCAGACCC TERM 850 756437 - 756447 + G 71 -6.8 -4.13767 | TGACACGCTGTTTTC CACC TTT GGTG TTTTAGCCTACGCAA TERM 851 756946 - 756981 + G 72 -3.9 -4.77165 | TGGGGGCGGGTGTTG CGGCCTCATCGGCGT TAGCCC ATGGCGATGATGACG TTTTGTTCTCAGCCC TERM 852 757690 - 757659 - g 71 -5 -4.54026 | opp_overlap 757668, overlap 757656 757663 TCCCAAATAAAACAA GGTATTGGCCCTGA ATTG CCACGGCCAAATCC GGTTCGTATTCCAAC TERM 853 757853 - 757883 + G 70 -9.1 -3.57144 | gap 1, opp_overlap 757850 757848, overlap 757851 757854 ATCTGATGAAGATGC TGCTTTGCAGCAGG CTAT CTTGC-GCAAAGCG TTTGCCGATCAGCAA TERM 854 758174 - 758193 + G 83 -10 -4.14004 | opp_overlap 758170 AGTCGATGACAGCCC GCGTGAGC CTCT GTTCACGC TTTCTCCTTATGTTG YPA_0666 756207 - 760106 + | putative cell division protein lolA 760299 - 760907 + | outer-membrane lipoprotein carrier protein TERM 855 760965 - 760982 + G 80 -10.5 -3.6715 | opp_overlap 760963 TGAGTTTCAACCACT GGCCGCG CGTA TGCGGCC TTTGACGTTGGATCA TERM 856 761912 - 761929 + G 73 -6.3 -4.44046 | CCGAAGGGGAGCGGG CGATTGC CCAG GCAATTG TTTATTTAGCCTGCG YPA_0668 760918 - 762261 + | recombination factor protein RarA TERM 857 762274 - 762250 - f 93 -9.9 -4.39828 | opp_overlap 762251 762256 762257 AATAGCCCGATAAAA CGCTACCGCTA GCT TTGCGGTTGCG GTAAGGTTAGCATTA TERM 858 762937 - 762947 + G 70 -8.2 -3.71672 | opp_overlap 762937 762936 TTCTCTGGGCGAAAT GGCC GGT GGCC TTGATTTTGCTGCCG TERM 859 763013 - 763001 - g 73 -9.1 -3.72576 | TTTGTGGTGATGAAA GGGCA AAT TGCCC GTATGCACCGTGCTC YPA_0669 762503 - 763795 + | seryl-tRNA synthetase TERM 860 763846 - 763868 + F 95 -4.9 -5.76633 | gap 1, opp_overlap 763850, overlap 763850 GTTATCTGCTATTTC G-AAAGCGTC TACG GGCGCTTTTC TTTTTTTGTGTATCC TERM 861 763850 - 763863 + F 95 -5.9 -5.61277 | opp_overlap 763850, overlap 763846 TCTGCTATTTCGAAA GCGTC TACG GGCGC TTTTCTTTTTTTGTG YPA_0670 764034 - 764654 + | hypothetical protein YPA_0671 764680 - 765183 + | major facilitator transporter TERM 862 765263 - 765225 - T 83 -11.2 -3.43033 | gap 3, opp_overlap 765228 765228, overlap 765228 TATCAATATATAAGA CAAC-GCCGCCA-GC-GGA TTCA TCCAGCATGGCGGCAGTTG TTAGGCCAAACCTAA TERM 863 765259 - 765228 - T 81 -9.5 -3.83668 | gap 2, opp_overlap 765228 765228, overlap 765225 CAATATATAAGACAA CGCCGCCA-GC-GGA TTCA TCCAGCATGGCGGCA GTTGTTAGGCCAAAC pflA 766071 - 765337 - | pyruvate formate lyase-activating enzyme 1 YPA_0673 767058 - 767732 + | hypothetical protein TERM 864 767796 - 767816 + T 90 -11.1 -3.97088 | opp_overlap 767796 CTCTGAATGAATAAA GGCCCCACA ATA TGTGGAGCC TTTCATGTTGTAACA TERM 865 767816 - 767796 - T 100 -13.3 -4.3255 | opp_overlap 767796 CTCTGAATGAATAAA GGCCCCACA ATA TGTGGAGCC TTTCATGTTGTAACA YPA_0674 770132 - 767850 - | formate acetyltransferase 1 TERM 866 769710 - 769724 + g 76 -2.8 -5.1925 | overlap 769718 GTTATGTGTTTTACG GTATTC GGT GAAGAC TTTTTTCAGTTGTGG YPA_0675 771045 - 770188 - | formate transporter YPA_0676 773508 - 771742 - | hypothetical protein TERM 867 772875 - 772888 + g 86 -8.1 -4.62069 | GCAAGCTGATGGACT CCGCA ATAA TGCGG TTTTTCACATAACGC ansB 773657 - 774694 + | L-asparaginase II TERM 868 774706 - 774733 + F 100 -13.6 -3.53343 | TTGATACTGTGACTT TTTTGCGAAGGC TACG GTCTTCGCAAAA TTTCCGCCAGACATT TERM 869 776002 - 776023 + G 76 -12.3 -3.0264 | overlap 776021 GAGTCAATGTTTCTG CCGACACTG AAGG CGGTGTCGG TGTTGCAGCGGGTTT YPA_0678 774963 - 776057 + | hypothetical protein YPA_0679 776078 - 777925 + | hypothetical protein TERM 870 778041 - 778027 - f 71 -8.6 -3.56568 | opp_overlap 778027 CAAGCAGCGTTCAAA TCTGCT CCC AGCAGA TTTGTCACCCCAGTC TERM 871 778027 - 778041 + F 75 -8.6 -3.86015 | opp_overlap 778027 CAAGCAGCGTTCAAA TCTGCT CCC AGCAGA TTTGTCACCCCAGTC YPA_0680 778292 - 779377 + | phosphoserine aminotransferase TERM 872 779372 - 779419 + F 73 -9.8 -3.02511 | overlap 779364 TTTGAACGCCGCCAT GGCTGATTTTTCTGGAGCGGGT ACTC ATCCGCTCCGGATCGATGGGCC TCTTGCAACAATGAG YPA_0681 779540 - 780826 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 873 781119 - 781076 - f 76 -11.2 -2.59881 | opp_overlap 781061 781080, overlap 781075 GATGCAGCGTATAAT GC-TACCTCTGTGTCTGCCC TGCCGG GGGCAGACA-AGAGGTTTGC CTACCGAAAGGAGAG TERM 874 781080 - 781114 + F 100 -15.9 -3.64703 | gap 1, opp_overlap 781076 781075, overlap 781061 CAGCGTATAATGCTA CCTCTGTGTCTGCCCT GCCG GGGGCAGACA-AGAGG TTTGCCTACCGAAAG TERM 875 781330 - 781347 + G 72 -4.1 -4.86731 | ATTGGTACCACTTGC CGCACAT CTCG ATGTTCG TTTTGTTTCACAGAA cmk 781139 - 781831 + | cytidylate kinase rpsA 782005 - 783678 + | 30S ribosomal protein S1 ihfB 783739 - 784023 + | integration host factor subunit beta TERM 876 784069 - 784088 + F 100 -7.1 -5.81412 | opp_overlap 784069 AACGCTGATACGAAA CGGTGCC CTTATC GGCATCG TTTTTTTTGCGTAAA YPA_0685 784570 - 786861 + | hypothetical protein TERM 877 787211 - 787233 + G 70 -2.7 -4.78326 | CCGCCGCCGCTTATT CAGCCATAT GATGG GTATGCCTG TTTCTTTCTTTGACC TERM 878 787443 - 787459 + G 74 -6.5 -4.33274 | GTGTCTATTTCGATC CGTCTGG TAT CCAAACG TTTTCGTAATATCAG YPA_0686 786897 - 788645 + | lipid transporter ATP-binding/permease protein TERM 879 788836 - 788826 - g 71 -6.8 -4.19238 | opp_overlap 788825 GGGGGAACGGTAAAA CACC GGT GGTG ATCTGGTTGGTTGAA lpxK 788642 - 789628 + | tetraacyldisaccharide 4'-kinase YPA_0688 790640 - 789636 - | hypothetical protein TERM 880 789670 - 789701 + g 76 -11 -3.18681 | gap 1, overlap 789675 789676 AGTTTGAGGGCGGCT GCACATTCAGCAACG GAA CGTTGCTGGGT-TGC TTCGTAGAGTTGCAG TERM 881 789675 - 789697 + g 75 -10.6 -3.40639 | overlap 789670 789676 GAGGGCGGCTGCACA TTCAGCAACG GAA CGTTGCTGGG TTGCTTCGTAGAGTT TERM 882 789676 - 789696 + g 73 -11.9 -2.63901 | overlap 789675 789670 AGGGCGGCTGCACAT TCAGCAACG GAA CGTTGCTGG GTTGCTTCGTAGAGT YPA_0689 791458 - 790679 - | transposase/IS protein TERM 883 791377 - 791391 + g 77 -11.4 -3.3506 | overlap 791390 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0690 792480 - 791458 - | transposase for insertion sequence IS100 TERM 884 792502 - 792484 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_0691 793094 - 792507 - | hypothetical protein TERM 885 793654 - 793632 - H 74 -4.3 -4.93877 | gap 1 TCTCAGGAAATAAAA TGATTATGCA AGCG TGC-TAATCA TTCACCAAGATAGAC TERM 886 793697 - 793682 - H 71 -4.6 -4.70046 | opp_overlap 793683, overlap 793683 GACAAAATTACAAAA CCCGCA ATTA TGCGGT TTTTTCATAAAATCA TERM 887 793683 - 793696 + H 95 -8.1 -5.15634 | opp_overlap 793683 793682 ACAAAATTACAAAAC CCGCA ATTA TGCGG TTTTTTCATAAAATC YPA_0692 793813 - 794022 + | cold shock-like protein TERM 888 794048 - 794028 - f 100 -12.6 -3.90112 | opp_overlap 794028 CGCTTTCTAAGCAAA CGGCTACC TCATC GGTAGCCG TTTCTCCCTTCTCGT TERM 889 794028 - 794048 + F 100 -12.6 -4.00468 | opp_overlap 794028 CGCTTTCTAAGCAAA CGGCTACC TCATC GGTAGCCG TTTCTCCCTTCTCGT YPA_0693 794570 - 794752 + | hypothetical protein YPA_0694 794749 - 795501 + | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 890 795522 - 795546 + F 100 -12.1 -4.15703 | opp_overlap 795518 GCGACGGAAACTTTA CGCCAGAACCT ACC GGGCTCTGGCG TTGTTATTTCTAACC YPA_0695 795825 - 796757 + | hypothetical protein TERM 891 797811 - 797797 - g 70 -4.2 -4.7373 | overlap 797799 GCAGCTCACGAAAAA GGTGTG AGC CACAAC ATGCAATTTATACAA TERM 892 797900 - 797932 + G 70 -4.2 -4.7373 | gap 1, opp_overlap 797900 797903, overlap 797902 797903 797903 ATGCGGTATTAGAAT GGATT-GCTGAACCT CAGC AGGTTCTGCAAATAC TTTTTGATACGCTAA YPA_0696 797530 - 798315 + | putative metallothionein SmtA YPA_0697 798312 - 799634 + | condesin subunit F YPA_0698 799615 - 800343 + | condesin subunit E TERM 893 800985 - 800995 + G 71 -6.8 -4.20367 | overlap 800984 AGCGCCATTACTCGC TCGC TAC GCGA TTATTTATTGCCAGA TERM 894 803734 - 803720 - g 72 -8.5 -3.82603 | AATGGTGAAAGATAA CGGCG TTGAG CGCCG CTTGCACCGCCGTGA mukB 800340 - 804797 + | cell division protein MukB TERM 895 804842 - 804861 + F 90 -7.1 -5.18726 | opp_overlap 804842 ATTAGTTTTATTAAA TGGTCGC ACAGAA GCGGCCA TTTTTATTGTGCCCA TERM 896 804882 - 804900 + F 100 -16 -3.07307 | opp_overlap 804882 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 897 804900 - 804882 - f 100 -16 -4.37092 | opp_overlap 804882 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0700 805013 - 805471 + | transposase for the IS1541 insertion element TERM 898 805545 - 805577 + F 100 -11.3 -5.26918 | opp_overlap 805552, overlap 805551 805552 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTTGTAACATCT TERM 899 805551 - 805571 + F 100 -12.5 -4.17307 | opp_overlap 805552, overlap 805545 805552 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTTGTA TERM 900 805570 - 805552 - f 100 -16 -4.8048 | opp_overlap 805551 805545 805552 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTGT TERM 901 805552 - 805570 + F 100 -16 -3.07944 | opp_overlap 805552, overlap 805551 805545 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTGT TERM 902 807583 - 807596 + G 74 -2.3 -5.08601 | opp_overlap 807561 CTGGTGCACAAATCT CACAG CAGG CTGAG TTTTTATTGCAATAA YPA_0701 805755 - 807611 + | hypothetical protein YPA_0702 807835 - 808383 + | hypothetical protein YPA_0703 808444 - 809091 + | metallo-beta-lactamase superfamily protein TERM 903 809185 - 809214 + T 74 -7.9 -3.94482 | opp_overlap 809186 809192, overlap 809187 809192 AGATGAATGTTCAAT AGCAAAAGATGCC GGAA GGCGTCTTTTGTG TTCTCTTTCGTTTAT TERM 904 809187 - 809212 + T 100 -12.7 -3.53929 | opp_overlap 809186 809192, overlap 809185 809192 ATGAATGTTCAATAG CAAAAGATGCC GGAA GGCGTCTTTTG TGTTCTCTTTCGTTT TERM 905 809192 - 809207 + T 82 -6.8 -4.80729 | opp_overlap 809186 809192, overlap 809187 809185 TGTTCAATAGCAAAA GATGCC GGAA GGCGTC TTTTGTGTTCTCTTT TERM 906 809264 - 809295 + T 100 -14.6 -2.77013 | opp_overlap 809271, overlap 809271 GTCATCGAGTGACCA GTCAAAAGGATGGC TTGG GCCATCCTTTTGAG GTTATTGACAAAGTG TERM 907 809271 - 809288 + T 100 -11.3 -4.24123 | opp_overlap 809271, overlap 809264 AGTGACCAGTCAAAA GGATGGC TTGG GCCATCC TTTTGAGGTTATTGA TERM 908 809288 - 809271 - T 100 -11.3 -4.21462 | opp_overlap 809271 809264 AGTGACCAGTCAAAA GGATGGC TTGG GCCATCC TTTTGAGGTTATTGA TERM 909 809369 - 809395 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 809358, overlap 809364 809370 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 910 809370 - 809396 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 809358, overlap 809364 809369 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 911 809460 - 809477 + T 100 -11.3 -4.4767 | opp_overlap 809463 TGTCAGCAGTCTGAA GGATGGC TTGG GCCATCC TTTTATGGTCAGTCA YPA_0704 810720 - 809515 - | aromatic amino acid aminotransferase TERM 912 810288 - 810301 + g 70 -2.3 -5.04325 | CCACTTCCAGCCCTG CGGCT TCGA AGACG TTTTTATGGTTTGGC TERM 913 810850 - 810834 - R 73 -5.1 -4.62336 | overlap 810845 810846 ATCTGAGGTGAAAAA TCGGC AAAATAG GCCGA TAGACAGAGTAATCT TERM 914 810896 - 810915 + r 95 -7.8 -5.09426 | opp_overlap 810896 AAATAGAAACAAAAA GACAGAGC CGAG GCCCTGTC TTTTTTCAACTTAGG TERM 915 810915 - 810896 - R 100 -10 -5.48623 | opp_overlap 810896 AAATAGAAACAAAAA GACAGAGC CGAG GCCCTGTC TTTTTTCAACTTAGG YPA_0705 811654 - 810962 - | putative outer membrane porin C protein YPA_0706 812045 - 811719 - | putative outer membrane porin C protein TERM 916 812309 - 812279 - R 100 -9.8 -5.09426 | opp_overlap 812282 812287, overlap 812280 812282 812287 TCGAATTTTAAAAAA TGATAAAAGCCAGC AGA GCTGGCTTTTATTT GTACAAATTGACGTT TERM 917 812308 - 812280 - R 100 -13.3 -3.64933 | opp_overlap 812282 812287, overlap 812279 812282 812287 CGAATTTTAAAAAAT GATAAAAGCCAGC AGA GCTGGCTTTTATT TGTACAAATTGACGT TERM 918 812306 - 812282 - R 100 -15.9 -3.39328 | opp_overlap 812282 812287, overlap 812280 812279 812287 AATTTTAAAAAATGA TAAAAGCCAGC AGA GCTGGCTTTTA TTTGTACAAATTGAC TERM 919 812282 - 812306 + r 100 -15.9 -3.89614 | opp_overlap 812282 812280 812279 812287, overlap 812287 AATTTTAAAAAATGA TAAAAGCCAGC AGA GCTGGCTTTTA TTTGTACAAATTGAC TERM 920 812287 - 812301 + r 100 -11.4 -4.99043 | opp_overlap 812282 812280 812279 812287, overlap 812282 TAAAAAATGATAAAA GCCAGC AGA GCTGGC TTTTATTTGTACAAA TERM 921 812301 - 812287 - R 100 -11.4 -4.76171 | opp_overlap 812287 812282, overlap 812282 812280 812279 TAAAAAATGATAAAA GCCAGC AGA GCTGGC TTTTATTTGTACAAA asnC 813743 - 812343 - | asparaginyl-tRNA synthetase YPA_0708 815462 - 814242 - | nicotinate phosphoribosyltransferase TERM 922 814529 - 814544 + g 85 -7.6 -4.77036 | CCAATACCTTTTTCA TTGGGT CAAT ACCCAA TTTTTCATAATGCGC TERM 923 816010 - 816027 + H 93 -4.1 -5.76949 | TATTTGCCGGAGTTG CCTGGGT TCTC ATCTAGG TTTTTTTTACAACTG TERM 924 816276 - 816263 - g 74 -3.7 -5.03314 | TGGATGCGCAAAAAA CGACG GTAA CGGCG GTCAGTAAAGTAAAA YPA_0709 816163 - 818778 + | aminopeptidase N YPA_0710 819414 - 820424 + | dihydroorotate dehydrogenase 2 TERM 925 820881 - 820896 + G 76 -7.6 -4.36914 | TCTTGAAACCACTCA TGCCAA AAAG TTGGCA TTTTGTACAGCAACC YPA_0711 820607 - 821158 + | hypothetical protein YPA_0712 822293 - 821184 - | putative iron-sulfur binding protein TERM 926 823411 - 823399 - g 71 -6.2 -4.30576 | GCCGTATGATGAAAA CCGC ATTTG GCGG CTGGCGTCTGTCACT YPA_0713 822396 - 824516 + | 23S rRNA m(2)G2445 methyltransferase TERM 927 826298 - 826318 + G 77 -9.1 -4.07568 | opp_overlap 826281, overlap 826302 AGCAAGTTACAGGCT GAAGTCAGT GAT ACTGATTTC TTTTCCCGCCCACAC TERM 928 826302 - 826314 + G 76 -6.3 -4.64861 | overlap 826298 AGTTACAGGCTGAAG TCAGT GAT ACTGA TTTCTTTTCCCGCCC YPA_0714 824522 - 826435 + | ABC transporter ATPase component YPA_0715 826564 - 827850 + | paraquat-inducible protein A YPA_0716 827810 - 829489 + | paraquat-inducible protein B YPA_0717 829486 - 830064 + | putative lipoprotein protein TERM 929 830088 - 830129 + F 70 -5.9 -4.3851 | overlap 830089 TCTAAATCAGTCTAA TCCTCTTTCTCTGGTAATA ATCA TCTTGTCAGGGGAAGGGGG TTTCTATTTAATATC TERM 930 830529 - 830547 + F 100 -11.7 -4.48987 | opp_overlap 830524 830523 CATTATCAAGGGTAA CCTCCGC ATTAG GCGGAGG TTTTCATTGTGCCCA TERM 931 830568 - 830586 + F 100 -16 -3.07307 | opp_overlap 830568 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 932 830586 - 830568 - f 100 -16 -4.37092 | opp_overlap 830568 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0718 830699 - 831157 + | transposase for the IS1541 insertion element TERM 933 831231 - 831263 + T 100 -11.3 -4.72631 | opp_overlap 831238, overlap 831235 831237 831238 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTATTGCGTTAGT TERM 934 831235 - 831259 + T 100 -9.9 -4.88795 | opp_overlap 831238, overlap 831231 831237 831238 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTATTGCGT TERM 935 831237 - 831257 + T 100 -12.5 -4.04859 | opp_overlap 831238, overlap 831235 831231 831238 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTATTGC TERM 936 831238 - 831256 + T 100 -16 -3.01288 | opp_overlap 831238, overlap 831237 831235 831231 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTATTG TERM 937 831256 - 831238 - T 100 -16 -4.8048 | opp_overlap 831238 831237 831235 831231 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTATTG YPA_0719 832302 - 831274 - | hypothetical protein TERM 938 832097 - 832085 - G 70 -9.1 -3.61232 | opp_overlap 832083, overlap 832083 TGTTTGATAGAAACA TGGCC AGC GGCCA AATTCACTAAGAATG YPA_0720 833097 - 832318 - | transposase/IS protein TERM 939 833016 - 833030 + g 77 -11.4 -3.3506 | overlap 833029 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_0721 834119 - 833097 - | transposase for insertion sequence IS100 TERM 940 834141 - 834123 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_0722 834507 - 834133 - | hypothetical protein TERM 941 835183 - 835147 - R 79 -6.8 -4.69664 | gap 1, opp_overlap 835150 835153, overlap 835150 TATATCACGTAAAAA CAATAAGGCG-ACATGA TTAA TCATATTCGCCTTATTT TACAATGCATTGACT TERM 942 835180 - 835150 - R 87 -8.5 -4.4521 | gap 1, opp_overlap 835150 835153, overlap 835147 ATCACGTAAAAACAA TAAGGCG-ACATGA TTAA TCATATTCGCCTTA TTTTACAATGCATTG YPA_0723 835725 - 835207 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YPA_0724 837416 - 835794 - | putative Lon protease TERM 943 836767 - 836778 + g 76 -5.8 -4.65916 | opp_overlap 836767 836766 GCATCGGCAGATAAG GCAG GGAG CTGC TTTTGTTGCAATAGG TERM 944 837831 - 837819 - g 76 -4.8 -5.0133 | TATTTGGTCAAAAAA CACC GTGAA GGTG AAGCCATTACCCGCC YPA_0725 837717 - 838211 + | hypothetical protein TERM 945 838306 - 838274 - T 100 -11.3 -4.04149 | opp_overlap 838281, overlap 838278 838280 838281 GAATCACAGGATAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 946 838302 - 838278 - T 100 -9.9 -4.60949 | opp_overlap 838281, overlap 838274 838280 838281 CACAGGATAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 947 838300 - 838280 - T 100 -12.5 -3.90309 | opp_overlap 838281, overlap 838278 838274 838281 CAGGATAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 948 838299 - 838281 - T 100 -16 -2.93101 | opp_overlap 838281, overlap 838280 838278 838274 AGGATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 949 838281 - 838299 + T 100 -16 -4.8048 | opp_overlap 838280 838278 838274 838281 AGGATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_0726 838838 - 838380 - | transposase for the IS1541 insertion element TERM 950 838969 - 838951 - R 100 -16 -3.07307 | opp_overlap 838951 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 951 838951 - 838969 + r 100 -16 -4.36914 | opp_overlap 838951 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 952 839006 - 838990 - R 100 -11.5 -5.93809 | opp_overlap 838990 TGGGCACAAAAAAAA CCCCGCA TAG CGCGGGG TTTTTCACGAAAGAA TERM 953 838990 - 839006 + r 100 -10.8 -4.56597 | opp_overlap 838990 TGGGCACAAAAAAAA CCCCGC ATAGC GCGGGG TTTTTCACGAAAGAA YPA_0727 840089 - 839028 - | outer membrane protein A TERM 954 840139 - 840163 + r 71 -5 -4.62336 | CTTTAAAAGCTAAGC CCTTGGTTAA AATTC TTCGCCAAGG TTTTTACGCTCCCGT YPA_0728 840953 - 840447 - | SOS cell division inhibitor TERM 955 841082 - 841101 + H 75 -5.8 -4.68506 | CATTTTATGTTTGGC TACGTAAT CCAT ATTGCGTA TTTTTGCAATTAGTT YPA_0729 841182 - 841817 + | hypothetical protein TERM 956 841891 - 841909 + T 84 -11.7 -3.09933 | opp_overlap 841891 841890 ATGAAACCGTATAAT GGGCCAC GATGG GTGGCCC TTGGGTACCTTAGGC TERM 957 841909 - 841891 - T 80 -11.7 -2.63747 | opp_overlap 841891, overlap 841890 ATGAAACCGTATAAT GGGCCAC GATGG GTGGCCC TTGGGTACCTTAGGC YPA_0730 844057 - 841919 - | hypothetical protein TERM 958 842654 - 842632 - G 71 -7.1 -4.19369 | gap 1, opp_overlap 842635 ACGCAAAAAACAGAA CACCACTGAT CACA ATCAG-GGTG AGTTGCCCCTCAATA YPA_0731 844533 - 844087 - | hypothetical protein TERM 959 844575 - 844565 - H 71 -2.4 -5.08824 | opp_overlap 844574 CGTTGAGTGAAAAAA CCGC AAT GTGG CTGAGCGATAGCCTA helD 844727 - 846781 + | DNA helicase IV TERM 960 846808 - 846837 + T 86 -11.5 -3.29187 | gap 1, opp_overlap 846813, overlap 846813 846832 AAGCGATGCTCAATA CTAAACCCGGTGGT TGA ACCACCGGGTG-AG TTACCTATTTTAGGT TERM 961 846813 - 846833 + T 100 -16.9 -2.58183 | opp_overlap 846813, overlap 846808 846832 ATGCTCAATACTAAA CCCGGTGGT TGA ACCACCGGG TGAGTTACCTATTTT TERM 962 846833 - 846813 - T 100 -16.9 -3.92592 | opp_overlap 846813 846808 846832 ATGCTCAATACTAAA CCCGGTGGT TGA ACCACCGGG TGAGTTACCTATTTT mgsA 847306 - 846842 - | methylglyoxal synthase YPA_0734 848165 - 847485 - | hypothetical protein YPA_0735 848481 - 848897 + | hypothetical protein TERM 963 848962 - 848932 - T 100 -9.7 -5.00616 | overlap 848933 GGGCTTTCTAAAAAA GCACCCTGTCAGC GTGCT GCTCACAGGGTGG CGAACCTGGCAATCA TERM 964 848961 - 848933 - T 100 -13.2 -3.60048 | overlap 848932 GGCTTTCTAAAAAAG CACCCTGTCAGC GTGCT GCTCACAGGGTG GCGAACCTGGCAATC YPA_0736 849323 - 849006 - | hypothetical protein YPA_0737 850574 - 849384 - | hypothetical protein TERM 965 849458 - 849433 - G 73 -10.5 -3.2964 | gap 1, opp_overlap 849449 AAACCTTCTGGATAA GCCGC-GATCAC TGG GTGATCCGCAGC TTGGCGGAACTGCTC TERM 966 850824 - 850803 - g 70 -9.5 -3.33162 | gap 1 GATGGTAGCGTAGAA GTGG-TTGCC AGC GGCAATCCAC AAGCAGTTGAACGTC YPA_0738 850668 - 850946 + | putative acylphosphatase YPA_0739 851327 - 850998 - | putative sulfite reductase subunit protein YPA_0740 852075 - 852362 + | putative transposase TERM 967 852552 - 852564 + F 75 -2 -5.29782 | opp_overlap 852552 TATATATCCAATATA TACT CACGA AGTA TTTTTTATGGATATA TERM 968 852854 - 852879 + G 70 -3.1 -4.77775 | overlap 852856 TACAACACTTCCATG GTTTGGCTGGG CAGA CCCTGACAACC TTTATTTTATCCGAT YPA_0741 852726 - 853088 + | hypothetical protein YPA_0742 853095 - 853373 + | hypothetical protein YPA_0743 853559 - 854539 + | hypothetical protein TERM 969 854950 - 854931 - T 91 -10.6 -4.08064 | AAGTTCGCCGTAAAA CCCCGTCC TTCA GGGCGGGG AGATAAGGCGCTGAG YPA_0744 857390 - 854973 - | putative oxidoreductase YPA_0745 858290 - 857544 - | putative short chain dehydrogenase TERM 970 857787 - 857797 + g 74 -6.8 -4.28548 | AGTAGTCGCAACCTC CAGC GCT GCTG TTTTGGTCAATCCCT YPA_0746 858919 - 859239 + | hypothetical protein YPA_0747 859503 - 860027 + | putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase TERM 971 860239 - 860257 + G 71 -5.2 -4.56597 | ATTCCCGATATAGTT CTTTCCCG TGC CGAGAAGG TTTTTAAACAGACGA YPA_0748 860017 - 861300 + | putative beta-ketoacyl-(acyl-carrier-protein) synthase TERM 972 861295 - 861308 + G 74 -2.4 -5.07486 | TTTAGTCGATATCAT GGTT AACATG AACC TTTTTATTAGCGGTG YPA_0749 861293 - 862039 + | putative beta-ketoacyl-(acyl-carrier-protein) reductase TERM 973 862917 - 862905 - g 74 -4.1 -5.03715 | opp_overlap 862905 ATTACGCGCAAAAAA TAGGC GCG ACCTA TTGTGGCAGCATTTT YPA_0750 862055 - 863293 + | putative hydroxymethylglutaryl-coenzyme A synthase TERM 974 863571 - 863581 + G 70 -3.2 -4.87592 | GGGCTTGCCTTACTG TCGG TTG TCGA TTTTATTCTGTCTAG YPA_0751 863286 - 864005 + | putative enoyl-CoA hydratase YPA_0752 863983 - 864759 + | polyketide biosynthesis enoyl-CoA hydratase YPA_0753 864762 - 865550 + | putative short chain dehydrogenase YPA_0754 865616 - 866077 + | hypothetical protein YPA_0755 866115 - 866363 + | putative acyl carrier protein YPA_0756 866462 - 867310 + | putative acyl transferase TERM 975 867884 - 867859 - f 82 -4.8 -5.41143 | opp_overlap 867861, overlap 867861 CATTTCTGAAAAAAA TATTTGTAGG CGAATT CCTACAAATC ACTTCCCAAATTCCT TERM 976 867882 - 867861 - f 75 -7.4 -4.34482 | opp_overlap 867861, overlap 867859 TTTCTGAAAAAAATA TTTGTAGG CGAATT CCTACAAA TCACTTCCCAAATTC TERM 977 868000 - 868018 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0757 868022 - 869044 + | transposase for insertion sequence IS100 TERM 978 869125 - 869111 - g 77 -11.4 -3.3506 | overlap 869102 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0758 869044 - 869823 + | transposase/IS protein YPA_0759 870258 - 870758 + | hypothetical protein TERM 979 870846 - 870824 - g 71 -6.3 -4.34402 | gap 1, overlap 870825 GTCTGTACAGGAAAA CCGTGCGCAG GGTA CTGCG-ACGA CCGTATTAAAGAATA YPA_0760 870807 - 872351 + | hypothetical protein TERM 980 872379 - 872396 + G 71 -5.5 -4.54727 | TGAAGATTGAACGTC CTCTGTG GACT CGCGGAG TTTTGATTTCCCCGC TERM 981 872445 - 872426 - g 90 -13.6 -3.68936 | CAGCAATTTCAACAA CAGGCCTC CTGG GAGGCCTG GACCAATGAATGCAT YPA_0761 872363 - 873715 + | hypothetical protein TERM 982 874002 - 874019 + G 74 -2.6 -5.09225 | overlap 874004 874005 CTTCGTGTGGTGCCA TTCGCC CTTACA GGCGCA TTTTTTCAATACCCT YPA_0762 873712 - 874398 + | hypothetical protein TERM 983 875485 - 875515 + G 77 -10.4 -3.61398 | GGGTGGCCTTTGATA TCCGTCAGTACCAC AGC GTGGCGATGACGGA TTATTCCCCGAAAGC YPA_0763 874398 - 876134 + | hypothetical protein YPA_0764 876138 - 876629 + | hypothetical protein TERM 984 876835 - 876854 + F 100 -9.2 -5.72118 | opp_overlap 876833, overlap 876836 ACGTTGTCATCAACT TCAGGCGG TTCG CCGCCTGC TTTTTTGTGTTTTTT TERM 985 876836 - 876853 + F 100 -12.7 -3.9778 | opp_overlap 876833, overlap 876835 CGTTGTCATCAACTT CAGGCGG TTCG CCGCCTG CTTTTTTGTGTTTTT TERM 986 877750 - 877727 - g 71 -6 -4.40561 | overlap 877724 CCGCCGTAAAAACAA CCCGATTC TGGTGGGT GAACCGGG TGTGGGGAAAACCGC YPA_0765 877017 - 879659 + | putative ATPase subunit of ATP-dependent protease YPA_0766 879662 - 882010 + | hypothetical protein YPA_0767 882095 - 884326 + | hypothetical protein YPA_0768 884323 - 885096 + | hypothetical protein YPA_0769 885250 - 885510 + | hypothetical protein TERM 987 885708 - 885724 + G 91 -6.5 -5.09895 | overlap 885704 885711 GGAGCAAGTGCGTGC CATTGCC GAC GGCACTG TTTTTTCAGTACGTC TERM 988 887013 - 887033 + G 84 -2.5 -5.55664 | opp_overlap 887013 887017, overlap 887016 887017 AAAATATTTAATCAA CACACCATT CCG AATGGCCTG TTTTTTTGGTAATGC TERM 989 887155 - 887171 + G 76 -2.9 -5.09426 | AATATTTGGTATTAC CCGTG GTATGGG CGCGG TTTTTTGCAATTAAC YPA_0770 885526 - 887709 + | hypothetical protein TERM 990 888118 - 888104 - g 72 -3.6 -4.75518 | TATATAAAATTAAAA CTTTAC AAT ATAAAG TCCCCAAACTCTTTG YPA_0771 887882 - 888352 + | hypothetical protein YPA_0772 888954 - 888817 - | putative transposase YPA_0773 889405 - 889085 - | putative transposase YPA_0774 889687 - 889514 - | IS630 orf TERM 991 890677 - 890694 + G 86 -9.1 -4.44915 | AGTTCTGGTGGTTTG CCATCGG TATC CCGGTGG TTTTCTGGCTGGTTC YPA_0775 890517 - 891749 + | hypothetical protein TERM 992 893229 - 893217 - g 70 -10.5 -3.01791 | AGCTGCCCGCCAACA GCCCG CAA CGGGC AGCACGGGCAAAAAC TERM 993 893283 - 893244 - g 73 -5 -4.60487 | CAGCACGGGCAAAAA CAGGCTATGACCAGTTAA AGGC TTATCTGATGATGGCCCG CCCGGAAAAAGCCGA TERM 994 893440 - 893452 + G 71 -10.5 -3.14344 | opp_overlap 893439 893436 GGACTGGAAAATTAC CCCGG ATA CCGGG TTGATCAGCCAGGTG TERM 995 893700 - 893685 - g 76 -6 -4.61199 | overlap 893687 AGGCGATAGATAAAA CGGTGG CCTC CCGCCG CGAAGAAATTGACTG TERM 996 894145 - 894124 - g 74 -6.5 -4.42653 | overlap 894127 AGGCGATGCACAAAA CAGGCTGTC GTCG GACAGCTCG CTGAGCCTGCAAACG YPA_0776 891746 - 895168 + | hypothetical protein TERM 997 895951 - 895933 - g 74 -6.6 -4.371 | opp_overlap 895944, overlap 895927 895944 895946 TCGATCAGACCAAAA CGCTGGCA AAA TACCTGCG CAACCAGCCGCAGGG TERM 998 896072 - 896046 - g 70 -11.4 -2.54523 | TTAGATGTGAACGGA CGGACCCGGCTG GTA CCGCCGCGCCCG GAATATCGCGTACAA YPA_0777 895212 - 896498 + | hypothetical protein YPA_0778 896550 - 896813 + | hypothetical protein YPA_0779 896831 - 897889 + | hypothetical protein TERM 999 898230 - 898246 + G 71 -6.5 -4.254 | overlap 898241 ACAAGCATTTATGCT CACCAGA GCC TCTGGAG TTTGTTCAGTATTGA YPA_0780 897904 - 898359 + | hypothetical protein TERM 1000 899285 - 899262 - gf 83 -11.8 -2.82516 | gap 1, opp_overlap 899260 899255 899264, overlap 899264 TCGGGGAGCAGGATA CACTGT-GGCC GAA GGCCGACAGTG CGTTCAGTGGTTATC YPA_0781 898580 - 900343 + | hypothetical protein YPA_0782 900307 - 901392 + | hypothetical protein YPA_0783 901268 - 901948 + | hypothetical protein YPA_0784 901948 - 902400 + | hypothetical protein TERM 1001 902531 - 902515 - g 71 -5 -4.56702 | opp_overlap 902521 902524, overlap 902517 GGTGAATTAAATAAA CTGGCC CACCC GGCCCG CCCGGATGTTGATTG TERM 1002 903064 - 903079 + G 79 -9 -4.19817 | AGCGAACCGGCCCCG CCACCT GTTC AGGTGG TTTTACCTGCCTCAC YPA_0785 902425 - 903792 + | hypothetical protein TERM 1003 903945 - 903896 - T 81 -10.8 -3.27923 | gap 1, opp_overlap 903901, overlap 903900 903905 TTTGAATATTATTAA TTAATGATAGCGCTCACAGCGGG GTGAT CCTGCTG-GAGCGCGACCTTTAA ACTGTATTAACACCA TERM 1004 903901 - 903940 + T 90 -11.4 -3.66883 | gap 1, opp_overlap 903900 903896 903905 ATATTATTAATTAAT GATAGCGCTCACAGCGGGG TGA TCCTGCTG-GAGCGCGACC TTTAAACTGTATTAA TERM 1005 903936 - 903905 - T 93 -12.3 -2.97613 | gap 1, opp_overlap 903901, overlap 903900 903896 TATTAATTAATGATA GCGCTCACAGCGGG GTGAT CCTGCTG-GAGCGC GACCTTTAAACTGTA YPA_0786 904627 - 904004 - | hypothetical protein TERM 1006 904439 - 904424 - G 76 -3.2 -5.18371 | TTCGACAAAATAAAA CTCAGC TGTT GTTGAG GCGTTATAGCGTTCT TERM 1007 904507 - 904517 + g 82 -4 -5.28166 | overlap 904494 TATGTTGGGTCTCAG CATT TAT AATG TTTTTGTTGATTTTC TERM 1008 905105 - 905131 + H 73 -3.6 -5.02502 | TATATAGGTAAAACG TCGTGTCTGCGA GCT TTGATGGCACGA TTTTTCTGTCATGTC YPA_0787 905142 - 906905 + | ABC transporter ATP-binding protein TERM 1009 906949 - 906931 - f 100 -8.8 -5.8187 | opp_overlap 906931 GACCTAACAAAAAAA GCTGATGC TAT GCGTCAGC TTTTTTTATGTCTTC TERM 1010 906931 - 906949 + F 100 -11 -5.80248 | opp_overlap 906931 GACCTAACAAAAAAA GCTGATGC TAT GCGTCAGC TTTTTTTATGTCTTC YPA_0788 907133 - 907786 + | hypothetical protein TERM 1011 907803 - 907791 - T 100 -7.7 -5.5762 | AGCAAATATAAAAAA GACAG AGC CTGTC CATAATTCTGTGTAA TERM 1012 907856 - 907835 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_0789 909038 - 907830 - | transposase for the IS285 insertion element YPA_0790 909944 - 909174 - | molybdopterin biosynthesis protein MoeB YPA_0791 911220 - 909946 - | molybdopterin biosynthesis protein MoeA TERM 1013 911374 - 911399 + r 100 -11.3 -4.34345 | AAAAATGAGATGGCT TGATACTGCTT TTAC GAGCAGTATCA TTTTCATCGTATATA TERM 1014 911595 - 911607 + r 74 -6.3 -4.56775 | CTTCAATATAACTTT CATTG CAA CAATG TTTTTACCAACACAT TERM 1015 911760 - 911731 - R 72 -9.3 -3.11687 | opp_overlap 911729 TGAATCATGAGGCAA CGTTGACGCCATA ATGA TGTGGCTTCAACG AATATCTGCCAGATA YPA_0792 913065 - 911755 - | putative heme-binding protein YPA_0793 913743 - 913075 - | ABC transporter ATP-binding protein YPA_0794 915007 - 913745 - | hypothetical protein YPA_0795 917369 - 915009 - | hypothetical protein TERM 1016 915709 - 915723 + g 78 -5.8 -4.76041 | opp_overlap 915709 TTTGTCGCTATAGCA TGATAA GTA TTATCA TTTTTACTGGGTGTA TERM 1017 915988 - 916007 + g 76 -5.8 -4.72272 | AATTCATCGCTTAGT GGAAATGT CACG ACATTTTC TTTTTCATAACCAAA TERM 1018 916396 - 916386 - G 73 -5.4 -4.72272 | TGTTGCGATGAAAAA TGAC TCT GTCA GTAATTGATAATTAG TERM 1019 917099 - 917109 + g 100 -5.4 -5.81622 | GTAAAGCGTAGGCGA CATC TTT GATG TTTTTTTCATTTTGT TERM 1020 917492 - 917510 + r 71 -4.6 -4.58698 | CCAACTCCATGCCGT TATCTTAC TGT GTAGGGTA TTATTTTTAATTTCG TERM 1021 917882 - 917869 - R 95 -8.1 -5.10461 | opp_overlap 917865 TCTATCGAATAAAAA GCCCT CGAA AGGGC TTGGGGTTTTATGTG YPA_0796 918764 - 917922 - | putative esterase TERM 1022 918725 - 918679 - G 75 -10.9 -3.47345 | gap 1, opp_overlap 918683, overlap 918680 918683 AAGGTCATATGACAA TTCAGGCTGCTGGCAGCATGGC GGTA GCGCTGTTGCCAGCAGCC-AAA CATCCGATGCTCTTC TERM 1023 918725 - 918680 - G 76 -12.5 -2.67925 | opp_overlap 918683, overlap 918679 918683 AGGTCATATGACAAT TCAGGCTGCTGGCAGCATGGC GGTA GCGCTGTTGCCAGCAGCCAAA CATCCGATGCTCTTC TERM 1024 918722 - 918683 - G 91 -16.4 -2.6252 | opp_overlap 918683, overlap 918679 918680 TCATATGACAATTCA GGCTGCTGGCAGCATGGC GGTA GCGCTGTTGCCAGCAGCC AAACATCCGATGCTC YPA_0797 919924 - 918785 - | alcohol dehydrogenase TERM 1025 919811 - 919801 - G 72 -8.2 -3.87815 | overlap 919785 CGTCAGTGTGACAAA CGCC ACT GGCG ACAATCCGCACTAAC YPA_0798 921067 - 920198 - | LysR family transcriptional regulator TERM 1026 921578 - 921618 + G 79 -11.7 -3.19824 | overlap 921577 921577 921579 GCACATTTTAGCCGT CCGGCGCTCAGTGCGGC CGTATTT GCCGGGCCGGGTGCCGG TATATTCATTAGTGG YPA_0799 921203 - 922354 + | hypothetical protein TERM 1027 922476 - 922448 - f 93 -13.3 -2.84 | opp_overlap 922471, overlap 922445 ATCACTGGATAATCA TTTCGCTCTCAAT TAG AGTGAGAGCGAAA TTCGGGTGTGACCCG folE 922496 - 923200 + | GTP cyclohydrolase I TERM 1028 923655 - 923669 + G 70 -10 -3.30418 | overlap 923653 923652 CAGCCAGCTTATTAC GTACCG GCG CGGTAC TCTATTTGATCGGTG TERM 1029 924033 - 924045 + G 80 -4.7 -5.14965 | overlap 924034 ATGTCGGTTGGGATT ACCGC TGG GCGGG TTTTTTGCTACAAGT TERM 1030 924034 - 924044 + G 70 -8.2 -3.68256 | overlap 924033 TGTCGGTTGGGATTA CCGC TGG GCGG GTTTTTTGCTACAAG YPA_0801 923255 - 924421 + | hypothetical protein TERM 1031 926125 - 926103 - g 76 -3.4 -5.14698 | opp_overlap 926104, overlap 926104 AAATTGAAAACAAAA TCGTACGTAT TCC ATACGTAGGT GTTGATAAAGATAAT YPA_0802 925169 - 926161 + | galactose-binding protein TERM 1032 926652 - 926632 - g 74 -6.9 -4.30448 | overlap 926625 AAATTGAATTTAAAA GTTCTAAAG AAG CATTAGAAC AGGGTGTTTCGATGG TERM 1033 926714 - 926743 + G 86 -2.8 -5.64274 | opp_overlap 926711 926714 926716, overlap 926716 TACAGTAATGGACAA CATGTGGTTGGG GCGCTA TCCAACCAAAGG TTTTTTTGTCGATCA YPA_0803 926391 - 927911 + | galactose/methyl galaxtoside transporter ATP-binding protein mglC 927932 - 928942 + | beta-methylgalactoside transporter inner membrane component TERM 1034 929124 - 929098 - T 100 -13.1 -4.68846 | gap 1, opp_overlap 929093 AGGAATAAAGTAAAA GCCAGTCAGGGC GATA GCCCT-ACTGGC TGAAGTTAATGACAA YPA_0805 930124 - 929387 - | hypothetical protein TERM 1035 929534 - 929522 - G 71 -6.9 -4.26871 | CAATGGACCAAGAAA GCGAG GTT CCCGC TTAAGAATATAGAGG TERM 1036 930290 - 930301 + r 71 -3 -5.06816 | CGCATGTGCTTTGGG GTTA CAAG TAAC TTTTTGTTCAACGCT TERM 1037 930371 - 930398 + r 73 -8.3 -3.65812 | overlap 930372 GATAGCATCTGAGTA CCCGGCCTGCG GTATAG CACAGGCCGGA TTATATTCAAAACGA TERM 1038 930372 - 930397 + r 83 -11.8 -2.79273 | overlap 930371 ATAGCATCTGAGTAC CCGGCCTGCG GTATAG CACAGGCCGG ATTATATTCAAAACG YPA_0806 932102 - 930405 - | malate dehydrogenase TERM 1039 931011 - 931027 + g 78 -2.2 -5.25803 | ATTGTGCAGATTCCA GTGGTG TAGGT CGTCAC TTTTTTGTACCAATT YPA_0807 933342 - 932458 - | cytidine deaminase TERM 1040 933657 - 933633 - R 71 -9.3 -2.98729 | overlap 933613 GATAAGGATTACAGA CCCTGACGT CGCTATC ACGCCAGGG GAAAGTGGGTTCAAC YPA_0808 934363 - 933668 - | hypothetical protein TERM 1041 933926 - 933910 - G 82 -7.3 -4.62904 | AAATACCGGCAAAAA TAACGCA AAC TGCGCTA ATAGCGGGTAAACCA YPA_0809 934767 - 934360 - | hypothetical protein TERM 1042 934745 - 934727 - G 70 -8.8 -3.6512 | TAAATAATGGTGAAA GCTCGCAG GTA CTGCCAGC AAAGTGACATCATAT YPA_0810 936190 - 935009 - | putative multidrug resistance protein TERM 1043 935268 - 935257 - G 73 -5.8 -4.5442 | CGCCCAATGAGAAAA TGGC CATT GCCA GCATCCATAACGGAA TERM 1044 936167 - 936193 + g 74 -2.2 -5.16681 | opp_overlap 936146, overlap 936172 AATCAGCAGATTGGT TACGCGCGATGA GAA TCTTTGCATGTA TTTTCTTATTTTTAG TERM 1045 936346 - 936373 + r 93 -9.8 -4.39226 | opp_overlap 936348, overlap 936343 936348 GAAAATTTTTGCAGG AAGCAGTTCGGC CAGA GCCGATCTGCTA TTATTTTCTAGTTAT TERM 1046 936371 - 936348 - R 93 -12.4 -3.1506 | opp_overlap 936346 936343 936348 AAATTTTTGCAGGAA GCAGTTCGGC CAGA GCCGATCTGC TATTATTTTCTAGTT TERM 1047 936348 - 936371 + r 100 -12.4 -3.78091 | opp_overlap 936348, overlap 936346 936343 AAATTTTTGCAGGAA GCAGTTCGGC CAGA GCCGATCTGC TATTATTTTCTAGTT YPA_0811 937776 - 936523 - | hypothetical protein TERM 1048 937583 - 937597 + g 90 -9.2 -4.63184 | opp_overlap 937583 GGCGCAGCGATGAAA CCTGCG GGA CGCGGG TTTTTGGCATCCCTT TERM 1049 937742 - 937722 - G 74 -11.1 -3.15544 | opp_overlap 937723 937725, overlap 937725 GGTCACTGTGACCAA TCAGCCGCA TAT TGCGGCTGT ATTCAGGTATCGGCA TERM 1050 937723 - 937741 + g 86 -14.6 -3.07962 | opp_overlap 937722 937725, overlap 937725 GTCACTGTGACCAAT CAGCCGCA TAT TGCGGCTG TATTCAGGTATCGGC TERM 1051 937739 - 937725 - G 71 -11.4 -2.78216 | opp_overlap 937723 937725, overlap 937722 CACTGTGACCAATCA GCCGCA TAT TGCGGC TGTATTCAGGTATCG TERM 1052 937725 - 937739 + g 74 -11.4 -3.09785 | opp_overlap 937725 937722, overlap 937723 CACTGTGACCAATCA GCCGCA TAT TGCGGC TGTATTCAGGTATCG YPA_0812 938870 - 937794 - | putative sugar ABC transporter TERM 1053 939502 - 939512 + H 86 -3.2 -5.61689 | GCCTATTTTTATATA TCGC GCA GTGA TTTTTTATTAATTTT TERM 1054 939937 - 939951 + G 72 -3.6 -4.84274 | GTGTGGTTTGATCTA GATGAT GCG ATTATC TTTTTGATGTCGTTA YPA_0813 939568 - 940230 + | hypothetical protein TERM 1055 940266 - 940302 + F 71 -8.8 -3.28712 | gap 1, opp_overlap 940271, overlap 940271 ACGGGTTTCAATCAT AAAAATGCCGGT-AGGG TTAC CCCAGACCGGCATTTTG TTGTGCCCAGAAAAC TERM 1056 940297 - 940271 - g 93 -8.7 -4.98255 | gap 1, opp_overlap 940266 940271 TTTCAATCATAAAAA TGCCGGT-AGGG TTAC CCCAGACCGGCA TTTTGTTGTGCCCAG TERM 1057 940271 - 940297 + G 91 -8.7 -4.77165 | gap 1, opp_overlap 940271, overlap 940266 TTTCAATCATAAAAA TGCCGGT-AGGG TTAC CCCAGACCGGCA TTTTGTTGTGCCCAG TERM 1058 940335 - 940317 - g 100 -16 -4.36914 | opp_overlap 940317 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1059 940317 - 940335 + G 93 -16 -3.07307 | opp_overlap 940317 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0814 940270 - 940458 + | hypothetical protein YPA_0815 940448 - 940906 + | transposase for the IS1541 insertion element TERM 1060 940980 - 941012 + T 100 -11.3 -4.43208 | opp_overlap 940987, overlap 940984 940986 940987 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTCTTTAAGGATCT TERM 1061 940984 - 941008 + T 100 -9.9 -4.78326 | opp_overlap 940987, overlap 940980 940986 940987 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTCTTTAAGG TERM 1062 940986 - 941006 + T 100 -12.5 -3.99693 | opp_overlap 940987, overlap 940984 940980 940987 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTCTTTAA TERM 1063 941005 - 940987 - T 100 -16 -4.8048 | opp_overlap 940986 940984 940980 940987 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCTTTA TERM 1064 940987 - 941005 + T 100 -16 -2.98189 | opp_overlap 940987, overlap 940986 940984 940980 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCTTTA metG 943097 - 941070 - | methionyl-tRNA synthetase YPA_0817 943362 - 944474 + | putative ATPase TERM 1065 944546 - 944508 - f 86 -11.8 -3.07344 | opp_overlap 944522 TGAGCGCGTAACACA CTGAGCCGGAAAGGTCAT TCA ATGATGCTTCCGGCTCAA GATCGGCTTAAATAG TERM 1066 945051 - 945035 - g 74 -2.2 -5.0666 | overlap 945036 CACGTAAAAAAGAAA CGGTTC ATTTA GAACCT AAAAAAGTGATCATT YPA_0818 944719 - 945360 + | uridine kinase dcd 945465 - 946046 + | deoxycytidine triphosphate deaminase TERM 1067 946161 - 946188 + F 71 -4.8 -4.63592 | CGCTTTCCCTTCATT TGACTTGGTCAG CAGT CTGGACTAGTCA TTCTTTTTATTGAGA TERM 1068 946372 - 946358 - g 76 -4.2 -4.99638 | overlap 946360 ACAGGTAGAGAAAAA GAGTGG TTA CCACTT GCAGTTGGAGGGTGA TERM 1069 948061 - 948047 - g 72 -3.5 -4.79174 | ACGTAACCAACAAAA TCGCC GTGTG GACGA TCTGAAAAAGTCACT YPA_0820 946233 - 948089 + | putative assembly protein TERM 1070 948179 - 948144 - T 82 -10.5 -3.61922 | gap 1, opp_overlap 948145 948146 948148, overlap 948146 948148 AATAGGTAGTGGAAA GAGATAGGCCCGATGG TTTCT CCACCGGGCCTAA-TC ATTTATTTTTCCAGG TERM 1071 948145 - 948180 + T 100 -8.3 -4.85782 | gap 1, opp_overlap 948144 948146 948148, overlap 948146 948148 ATAGGTAGTGGAAAG AGA-TAGGCCCGATGG TTTCT CCACCGGGCCTAATCA TTTATTTTTCCAGGC TERM 1072 948179 - 948146 - T 100 -14 -3.38522 | gap 1, opp_overlap 948145 948146 948148, overlap 948144 948148 TAGGTAGTGGAAAGA GA-TAGGCCCGATGG TTTCT CCACCGGGCCTAATC ATTTATTTTTCCAGG TERM 1073 948146 - 948179 + T 91 -11.8 -3.50746 | gap 1, opp_overlap 948144 948146 948148, overlap 948145 948148 TAGGTAGTGGAAAGA GA-TAGGCCCGATGG TTTCT CCACCGGGCCTAATC ATTTATTTTTCCAGG TERM 1074 948176 - 948148 - T 100 -16.8 -3.26031 | opp_overlap 948146 948145 948148, overlap 948144 948146 GGTAGTGGAAAGAGA TAGGCCCGATGG TTTCT CCACCGGGCCTA ATCATTTATTTTTCC TERM 1075 948148 - 948176 + T 100 -14.6 -2.57916 | opp_overlap 948148 948144 948146, overlap 948146 948145 GGTAGTGGAAAGAGA TAGGCCCGATGG TTTCT CCACCGGGCCTA ATCATTTATTTTTCC YPA_0821 949847 - 948234 - | hypothetical protein TERM 1076 949939 - 949917 - H 72 -7.1 -3.91716 | gap 1 CCATTTGTTAAAGAA GTGCATCGAC CAGA GTCGAT-CAC AAAAAAATCAATCCA YPA_0822 950289 - 951068 + | ferric iron reductase involved in ferric hydroximate transport TERM 1077 951069 - 951097 + F 72 -7.5 -3.9751 | opp_overlap 951073 AATCTTATTAGTTAG CCAAGTTCCTG CATTAGA CAGAAACTTGG TTGTATTCTTTATTT TERM 1078 951704 - 951683 - g 74 -6.5 -4.37886 | overlap 951685 GGACCCGCGATAAAA TGGCCCTAG GTAG CCAGGGCGA CGGTATTTTCACCAG TERM 1079 952405 - 952424 + G 74 -7.9 -4.14874 | CTACGGATTATGGGA GCCAAAC AGCTTG GTTTGGC TTTTGAACATGTTAT YPA_0823 951220 - 952767 + | putative decarboxylase TERM 1080 954069 - 954052 - g 70 -2.7 -4.87665 | opp_overlap 954054, overlap 954054 954068 TCCGATTGAGAAAAA CATTGCT TTTC AGCAATT CAGTGCGCCATCACT YPA_0824 952802 - 954100 + | putative siderophore biosynthetic enzyme YPA_0825 954100 - 954678 + | putative siderophore biosynthetic enzyme TERM 1081 956436 - 956423 - g 72 -8.1 -3.96469 | opp_overlap 956422 956423 ACAGCTCAACAATAA CCAGC ACAT GCTGG ATTTAGCTGACCCTG YPA_0826 954675 - 956519 + | putative siderophore biosynthetic enzyme YPA_0827 957476 - 956628 - | putative iron-siderophore transport system, ATP-binding component YPA_0828 958513 - 957473 - | putative iron-siderophore transport system, membrane permease component YPA_0829 959540 - 958500 - | putative iron-siderophore transport system, transmembrane component TERM 1082 958776 - 958738 - G 70 -2.9 -4.75472 | gap 1, overlap 958739 958740 958742 GCCAGACCAATAAAA GC-GACCGGACCCGCTAC TGCC GTCGCGGTAGCGGCCAGC AATGTTGCGCCTACT TERM 1083 959080 - 959068 - G 75 -9.1 -3.84246 | opp_overlap 959068 959066 CCGGTAAGCACCAAA CGCAC CGA GTGCG TATTCCGTTGCCCGC YPA_0830 960616 - 959537 - | putative iron-siderophore transport system, periplasmic binding protein TERM 1084 960683 - 960662 - R 71 -8.7 -3.39908 | overlap 960660 CGTTGGCAAAAGATA CAGCCGG AAAAGTGG CCGGCTG TGAGGGTATCCAACT YPA_0831 962967 - 960706 - | putative iron-siderophore receptor TERM 1085 962008 - 962041 + g 80 -13.9 -3.00946 | overlap 962005 962021 TCGGGTTTCGGCGGA TGCCCAATCCGATGC GGTG GTGGCGGATTGGGCA TAATTTGTCCGCCCA TERM 1086 962170 - 962182 + g 73 -3.3 -5.01811 | opp_overlap 962171, overlap 962171 962173 ATCTATCTCCAAGAT ACCGT AAA ACGGG TTTTTACTTTGATCA TERM 1087 962930 - 962947 + g 89 -2.5 -5.70829 | opp_overlap 962931, overlap 962931 962933 GTGCAGTTAAAACGC ACTCGGC TTTT GCCGTGA TTTTTTTCTAGTATT YPA_0832 964334 - 963180 - | putative siderophore biosynthetic enzyme YPA_0833 965002 - 964181 - | putative siderophore biosynthetic enzyme TERM 1088 964529 - 964516 - GH 74 -4.5 -4.83615 | gap 1 TATTCGCGATAAAAA CG-GGG TGG CCCTCG CTCATCGCTGTTTCT TERM 1089 966641 - 966630 - g 71 -5.8 -4.36914 | overlap 966632 CGTTGCTTGAGAAAA CACC ACGT GGTG CGGGGGATGAAATTC YPA_0834 965948 - 966838 + | UTP-glucose-1-phosphate uridylyltransferase YPA_0835 966922 - 967815 + | UTP-glucose-1-phosphate uridylyltransferase TERM 1090 967894 - 967909 + F 89 -10.4 -4.01603 | overlap 967889 967906 TTGGCAGTTTAGGCC GCGCCA TTTG TGGCGC TTTGCTCTTTGCCTA YPA_0836 968201 - 969610 + | 6-phosphogluconate dehydrogenase TERM 1091 969781 - 969757 - T 100 -8.6 -5.06414 | opp_overlap 969757 GCTGCCCAATAAAAA CGCCTCCA GTGATAAGT TGGAGGCG TTTTTTTGCCAGTGA TERM 1092 969757 - 969781 + T 100 -10 -5.42259 | opp_overlap 969757 GCTGCCCAATAAAAA CGCCTCCAGT GATAA GTTGGAGGCG TTTTTTTGCCAGTGA YPA_0837 970424 - 969810 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YPA_0838 971194 - 970418 - | imidazole glycerol phosphate synthase subunit HisF TERM 1093 970723 - 970735 + g 73 -9.1 -3.77206 | CCCAATCTTCGGTTT GCCAC GTG GTGGC TTTGGTACGCTTCTC YPA_0839 971913 - 971176 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 1094 971728 - 971748 + g 73 -9 -3.65902 | opp_overlap 971713 CTCGCGCAGTAGTGG GATCTGGC GAGCG GCCGGATC TTTGGCTCCGGTCAG hisH 972509 - 971919 - | imidazole glycerol phosphate synthase subunit HisH YPA_0842 973576 - 972509 - | imidazole glycerol-phosphate dehydratase/histidinol phosphatase YPA_0841 971946 - 972563 + | hypothetical protein TERM 1095 972779 - 972767 - GT 71 -9.1 -3.27121 | ACCAGAAATATCCAA GGCAC AGC GTGCC AGGCACTCATCCATC YPA_0843 974721 - 973573 - | histidinol-phosphate aminotransferase hisD 976055 - 974724 - | histidinol dehydrogenase TERM 1096 975978 - 975992 + g 70 -2.1 -4.93316 | gap 1, overlap 975987 TGCATTGATGGCTGG GCGGCT CAAC AGC-GC TTTTTGCTGTTCTTC hisG 976958 - 976059 - | ATP phosphoribosyltransferase TERM 1097 976095 - 976113 + g 73 -10.2 -3.33711 | opp_overlap 976088 976094 976091 976095 CGGTAATACCAGAAT GGAGCTGG CAC CCAGCGCC TTCAATTTCTCCATG TERM 1098 977132 - 977181 + H 78 -10.1 -3.48395 | gap 1, opp_overlap 977144, overlap 977144 GTCTATAAAATGATG AGCAATAAAAAAGCCCTCGGAAGA TTA TCTTCCGAGGGCTCTCT-ACTGCG TTCTCTACGCCACCT TERM 1099 977144 - 977170 + H 100 -21 -2.96538 | opp_overlap 977144, overlap 977132 ATGAGCAATAAAAAA GCCCTCGGAAGA TTA TCTTCCGAGGGC TCTCTACTGCGTTCT TERM 1100 977170 - 977144 - H 100 -21 -5.52023 | opp_overlap 977144 977132 ATGAGCAATAAAAAA GCCCTCGGAAGA TTA TCTTCCGAGGGC TCTCTACTGCGTTCT YPA_0846 977664 - 978491 + | hypothetical protein YPA_0847 979080 - 978646 - | hypothetical protein YPA_0848 980320 - 979325 - | ribose transport system, permease protein YPA_0849 981069 - 980317 - | ATPase TERM 1101 980580 - 980601 + gr 70 -2.9 -4.81083 | overlap 980582 CCTGTGCATCACCGC GCAGCCATT TACC AATGGCCAC TTTTTGCTGATTCCC YPA_0850 981857 - 980964 - | hypothetical protein YPA_0851 982143 - 983234 + | hypothetical protein TERM 1102 983344 - 983369 + F 100 -7.6 -6.15259 | opp_overlap 983344 983347 ATACGCCGAATGAAA TAGCCGACGT TTAAAC GCGTCGGTTA TTTTTTTTTGCATTC TERM 1103 983531 - 983546 + F 74 -10.4 -2.57132 | overlap 983530 GTGCCCACCGGTATG CGCTGC ACAT GCAGCG ATTATGGCGCAGCAG YPA_0852 983694 - 985085 + | amino acid permease TERM 1104 985118 - 985141 + T 100 -11.8 -5.47159 | gap 1, opp_overlap 985118 CATTAAGTTTATCAA TCCGGC-ACAG TCT CTGTTGCCGGA TTTTTTGTATTCAGA TERM 1105 985141 - 985118 - T 86 -11.8 -3.19157 | gap 1, opp_overlap 985118 CATTAAGTTTATCAA TCCGGC-ACAG TCT CTGTTGCCGGA TTTTTTGTATTCAGA TERM 1106 985703 - 985692 - T 71 -4.4 -4.84761 | AGATGCTGACAAAAA GAAC TTAA GTTC ACTGCCGCACAGGCA sbcB 987252 - 985822 - | exonuclease I YPA_0854 987545 - 988654 + | hypothetical protein YPA_0855 989088 - 989405 + | hypothetical protein TERM 1107 989462 - 989484 + F 100 -11.3 -5.16841 | opp_overlap 989460 AGGGGAAAGAGAGTG GGGCTGGCA TCTAT TGTCAGCCC TTTTTATTGGTGTGC TERM 1108 990963 - 990984 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_0856 989781 - 990989 + | transposase for the IS285 insertion element YPA_0857 994104 - 990952 - | hypothetical protein TERM 1109 992956 - 992969 + g 71 -6.7 -4.21773 | TTGTGCTGTGGCATT TGCCA CTAA TGGCA TTGTTTGTCTTGCCG TERM 1110 994648 - 994631 - R 76 -2.7 -5.38054 | opp_overlap 994645, overlap 994645 TTTTATAAATAAAAA TGACATT TTAA AAAGTCA ATCTGACATTATTCT TERM 1111 994655 - 994645 - R 73 -5.4 -4.65168 | opp_overlap 994645, overlap 994631 ATGACATTTTAAAAA GTCA ATC TGAC ATTATTCTGAAAACA YPA_0858 994967 - 994773 - | hypothetical protein TERM 1112 995714 - 995725 + G 70 -2.2 -4.92314 | CCCGCCGTGGGGTTA GGTA TTTT TGCC TTTTTCTACCTTGAT YPA_0859 995129 - 996433 + | putative transmembrane transporter YPA_0860 996864 - 996442 - | hypothetical protein YPA_0861 997292 - 998032 + | putative oxidoreductase YPA_0862 998080 - 998922 + | putative hydrolase YPA_0863 998954 - 1000231 + | putative racemase TERM 1113 1000732 - 1000744 + G 70 -9.1 -3.50853 | CTTTTCGGCGAGACG CAGGC AAT GCCTG TTGTCCTTGGGCCAG lldD 1000528 - 1001673 + | L-lactate dehydrogenase TERM 1114 1001799 - 1001770 - T 83 -10.7 -3.4678 | overlap 1001771 ACTGTGACACGAGAA GGGTTAAGGGGGG GAAG CTCCCCTTAACCG CTTGGGGTCGCGCAG TERM 1115 1001798 - 1001771 - T 95 -14.2 -2.67747 | overlap 1001770 CTGTGACACGAGAAG GGTTAAGGGGGG GAAG CTCCCCTTAACC GCTTGGGGTCGCGCA YPA_0865 1002987 - 1001878 - | argininosuccinate synthase YPA_0866 1003246 - 1002881 - | argininosuccinate synthase TERM 1116 1003776 - 1003787 + G 85 -3.6 -5.47821 | CGACAGTTTCAATAT GCTG ATTG CGGC TTTTTTTGCCTCCGT YPA_0867 1003540 - 1004970 + | hypothetical protein YPA_0868 1006338 - 1004998 - | putative sugar transporter TERM 1117 1006288 - 1006319 + g 86 -3 -5.65177 | gap 1, overlap 1006291 1006292 GACATCTTTGATTGT TAATTGCTG-CGGCT GCC AGCCATCAGCAGATA TTTTTTTATAGATGT YPA_0869 1007255 - 1006374 - | putative polysaccharide deacetylase TERM 1118 1007023 - 1007033 + g 76 -8.2 -4.21141 | ACTTCGTGTCCAGCC GCGG CTA CCGC TTTCATTTGTTCAGG YPA_0870 1007832 - 1008527 + | hypothetical protein TERM 1119 1008726 - 1008707 - g 90 -8.6 -5.06103 | AGAACGGCTAAAAAA TCACGAGC TCAG ACTCGTGA GGCAAGAGAGGCTGT TERM 1120 1008770 - 1008758 - g 91 -3.3 -5.83211 | GAGGAAAATAAAAAA GCACA ACT TGAGC GTGATAAACAGCTAA YPA_0871 1008617 - 1009156 + | hypothetical protein TERM 1121 1009223 - 1009259 + T 79 -6.8 -4.66537 | gap 1, opp_overlap 1009230 1009236 1009237, overlap 1009226 AATCTTTACAAATAC TCATAGATGAAAAGTCC CTCA GGGCTTTTCAT-TAAGA TTTTATGTTCAGCCA TERM 1122 1009468 - 1009491 + T 100 -13.2 -4.15998 | opp_overlap 1009468 ACTGAAATGCAAAAA CCCTGCTTAG TTAC CTAGGCAGGG TTCTTTAATTTGGCT TERM 1123 1009491 - 1009468 - T 100 -11 -4.81851 | opp_overlap 1009468 ACTGAAATGCAAAAA CCCTGCTTAG TTAC CTAGGCAGGG TTCTTTAATTTGGCT TERM 1124 1009969 - 1009912 - T 82 -10.2 -3.68988 | gap 3, opp_overlap 1009914 1009915 1009927, overlap 1009913 1009927 GGCGAGGTAACAGAA TCCTCAGCGCCTAAATACCGTCTTGCCAA CTA TCGGCAAG-CGGTATTTAGGC-C-GCAAA TGGTTTGCCCGACTT TERM 1125 1009971 - 1009913 - T 100 -16.3 -2.81072 | opp_overlap 1009914 1009915 1009927, overlap 1009912 1009927 GCGAGGTAACAGAAT CCTCAGC-GCCTAAATACCGTCTTGCCAA CTA TCGGCAAG-CGGTATTTAGGCCGCAAATG GTTTGCCCGACTTCA TERM 1126 1009915 - 1009969 + T 95 -13.1 -2.90992 | opp_overlap 1009912 1009913 1009927, overlap 1009914 1009927 GAGGTAACAGAATCC TCAGCG-CCTAAATACCGTCTTGCCAA CTA TCGGCAAG-CGGTATTTAGGCCGCAAA TGGTTTGCCCGACTT TERM 1127 1009927 - 1009956 + T 78 -10.1 -3.53224 | gap 1, opp_overlap 1009912 1009913 1009927, overlap 1009915 1009914 TCCTCAGCGCCTAAA TACCGTCTTGCCAA CTA TCGGCAAG-CGGTA TTTAGGCCGCAAATG TERM 1128 1009956 - 1009927 - T 100 -12.3 -3.55444 | gap 1, opp_overlap 1009927 1009915 1009914, overlap 1009912 1009913 TCCTCAGCGCCTAAA TACCGTCTTGCCAA CTA TCGGCAAG-CGGTA TTTAGGCCGCAAATG YPA_0872 1010652 - 1010023 - | GerR family transcriptional regulatory protein TERM 1129 1010949 - 1010933 - R 73 -8.7 -3.40558 | overlap 1010931 TATATATTCCAAACA TCCGTGG CAA CCACAGA GAGATTTCCGGAATA YPA_0873 1012202 - 1010910 - | putative C4-dicarboxylate transporter, large subunit YPA_0874 1012728 - 1012222 - | putative C4-dicarboxylate transporter, small subunit TERM 1130 1012561 - 1012549 - G 74 -7.7 -4.15044 | CGCTGCGCCAATAAA GGTGA ACG TCACC ATACATAAAATAGCG TERM 1131 1012841 - 1012815 - R 75 -10.3 -2.73875 | overlap 1012812 CGTTGGGTAATATCA GCGGTATTAAA AATAA TTCAATACCGC CGGATGGATGTTATT YPA_0875 1013844 - 1012852 - | putative C4-dicarboxylate transporter, periplasmic protein YPA_0876 1014367 - 1015107 + | putative phosphopantetheinyl transferase YPA_0877 1015097 - 1015246 + | hypothetical protein TERM 1132 1015488 - 1015469 - T 95 -12.8 -2.94322 | opp_overlap 1015465, overlap 1015466 ATTGGACGCAAAGTA GGCCGCCA TAAA CGGCGGCC TGAGGTTAATTTACG YPA_0878 1017620 - 1015494 - | alpha-galactosidase lacY 1018942 - 1017698 - | galactoside permease TERM 1133 1020182 - 1020203 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_0880 1019000 - 1020208 + | transposase for the IS285 insertion element YPA_0881 1020213 - 1020890 + | transposase YPA_0882 1020805 - 1021809 + | helicase TERM 1134 1021869 - 1021852 - f 76 -6.9 -4.431 | opp_overlap 1021852 TATTCACTGATAAAA CCGCTTC TTAG GAGGCGG TTTTTTTGTGCCCAG TERM 1135 1021852 - 1021869 + F 100 -9.1 -5.60993 | opp_overlap 1021852 TATTCACTGATAAAA CCGCTTC TTAG GAGGCGG TTTTTTTGTGCCCAG TERM 1136 1021889 - 1021907 + F 100 -16 -3.07307 | opp_overlap 1021889 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1137 1021907 - 1021889 - f 100 -16 -4.36914 | opp_overlap 1021889 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0883 1022020 - 1022478 + | transposase for the IS1541 insertion element TERM 1138 1022556 - 1022580 + F 100 -9.9 -4.55697 | opp_overlap 1022559, overlap 1022558 1022559 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATCAAAAT TERM 1139 1022558 - 1022578 + F 100 -12.5 -3.88703 | opp_overlap 1022559, overlap 1022556 1022559 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATCAAA TERM 1140 1022559 - 1022577 + F 100 -16 -2.92499 | opp_overlap 1022559, overlap 1022558 1022556 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCAA TERM 1141 1022577 - 1022559 - f 100 -16 -4.8048 | opp_overlap 1022558 1022556 1022559 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCAA TERM 1142 1023168 - 1023142 - g 80 -9.5 -4.11404 | opp_overlap 1023146, overlap 1023144 TCTATAGTAGATAAA GACATCACCAC AGTAA GTGGTGATGTT AACGCGGTGAATTCG TERM 1143 1023166 - 1023144 - g 82 -12.1 -3.65001 | opp_overlap 1023146, overlap 1023142 TATAGTAGATAAAGA CATCACCAC AGTAA GTGGTGATG TTAACGCGGTGAATT TERM 1144 1023573 - 1023595 + G 70 -8.6 -3.72374 | opp_overlap 1023567 1023573 1023574, overlap 1023567 1023566 1023571 1023574 TTCAGGAGAGGTAAA TTTTACCATT ACT AATGGTAAAG TATTTGTTAATGAAC YPA_0884 1022893 - 1023822 + | hypothetical protein TERM 1145 1023838 - 1023886 + F 88 -9.8 -4.07687 | gap 1, opp_overlap 1023868, overlap 1023841 AATACGTATTTAGAC TATCTCTTTGGCAATGTCCATTT TCAT AAATGGGCATTGCCCATGGG-TA TTTTACCACACGACT TERM 1146 1023841 - 1023884 + F 100 -14 -3.63744 | opp_overlap 1023868, overlap 1023838 ACGTATTTAGACTAT CTCTTTGGCAATGTCCATTT TCAT AAATGGGCATTGCCCATGGG TATTTTACCACACGA TERM 1147 1023880 - 1023868 - f 78 -9.1 -3.87815 | opp_overlap 1023841 1023838 GTCCATTTTCATAAA TGGGC ATT GCCCA TGGGTATTTTACCAC YPA_0885 1024116 - 1025060 + | tRNA-dihydrouridine synthase C YPA_0886 1025313 - 1025134 - | hypothetical protein pbpG 1025652 - 1026587 + | D-alanyl-D-alanine endopeptidase TERM 1148 1026640 - 1026611 - T 95 -12.3 -3.35996 | opp_overlap 1026611 CATCGCGACTGAGAA GCGGAATTTGC TAGCAGAG GCAAATTCCGC TTTAGTGACTAATTG TERM 1149 1026611 - 1026640 + T 100 -13 -3.7791 | opp_overlap 1026611 CATCGCGACTGAGAA GCGGAATTTGCT AGCAGA GGCAAATTCCGC TTTAGTGACTAATTG YPA_0888 1028420 - 1026708 - | D-lactate dehydrogenase TERM 1150 1027509 - 1027481 - G 70 -3.2 -4.87626 | gap 1 CCGCAATATCAAAAA TATCAC-GGTGCA GATA TTCACCCGCGATA GGTAAATGTTTAAAG TERM 1151 1029092 - 1029082 - g 71 -6.8 -4.13995 | opp_overlap 1029081 GCTTGATAAATTAAA GGCA GAA TGCC GTGATTTTGCCAATA YPA_0889 1028630 - 1029169 + | adenylate cyclase 2 YPA_0890 1029536 - 1029195 - | hypothetical protein TERM 1152 1029632 - 1029646 + G 80 -2.7 -5.34365 | opp_overlap 1029626 1029634 ATACTCAAACGCCAA CACGC CATTA GCGCG TTTTTCTTCTTATCG YPA_0891 1029537 - 1029707 + | hypothetical protein TERM 1153 1029917 - 1029930 + G 74 -2.3 -5.0707 | opp_overlap 1029891 1029918, overlap 1029918 TGCAGTCGTGCAACA AGACC TGAG GGTCG TTTATTTTTATATTT YPA_0892 1029849 - 1030952 + | hypothetical protein YPA_0893 1031137 - 1031385 + | hypothetical protein TERM 1154 1031521 - 1031482 - f 80 -8.7 -3.96298 | opp_overlap 1031493, overlap 1031487 1031493 CAGTCATTAATTAAA CACACGAAAAAGGTGGC TATTTT GTCACCTTTTTCACATG CAACTATCATCAATA TERM 1155 1031493 - 1031510 + F 71 -4.8 -4.62069 | opp_overlap 1031487 1031482 1031493 TAAACACACGAAAAA GGTGGC TATTTT GTCACC TTTTTCACATGCAAC TERM 1156 1032226 - 1032216 - g 73 -5.4 -4.62069 | opp_overlap 1032216, overlap 1032190 1032218 1032223 GTTGGACCCTAAAAA TACG ACA CGTA TTATGAATACGTTAC YPA_0894 1031557 - 1032429 + | putative ABC transport ATP-binding subunit YPA_0895 1032466 - 1033395 + | putative substrate-binding periplasmic transport protein TERM 1157 1033418 - 1033444 + F 75 -5.9 -4.70659 | gap 1, opp_overlap 1033420, overlap 1033420 1033422 CAACGGATAAAACAA CA-TGGCTCTGG TTCG CCGGAGCTATTG TTTTTAGGTGTAACA TERM 1158 1033420 - 1033441 + F 93 -8.7 -4.46215 | opp_overlap 1033420, overlap 1033418 1033422 ACGGATAAAACAACA TGGCTCTGG TTCG CCGGAGCTA TTGTTTTTAGGTGTA TERM 1159 1033422 - 1033439 + F 78 -9.1 -3.82353 | opp_overlap 1033420, overlap 1033420 1033418 GGATAAAACAACATG GCTCTGG TTCG CCGGAGC TATTGTTTTTAGGTG YPA_0896 1033498 - 1034358 + | putative ABC transport membrane permease TERM 1160 1034436 - 1034414 - g 74 -4 -5.00196 | GCTGAAACAACAAAA TCCGCAGCTT TTC AGGCAGCAGA AACGTTATATCAGAT YPA_0897 1034361 - 1035242 + | putative ABC transport membrane permease TERM 1161 1035410 - 1035425 + F 74 -4 -4.94243 | gap 1, overlap 1035412 1035414 CAATACTGCCCGCTA GA-CGTC AAA GACGCTC TTTTAGTTTTTTTGC TERM 1162 1035776 - 1035764 - g 73 -3.3 -5.00884 | overlap 1035765 ATTGTGTTGAAAAAA CTGCG TGT CGCAT TCGAATTGAAAGACA YPA_0898 1035488 - 1035961 + | hypothetical protein TERM 1163 1036078 - 1036102 + F 72 -6.4 -4.31085 | CTGTTAGTAAAAAAA CAGGTGTGGT AATCC GCCATGCCTG TTTTAGATTAATATA YPA_0899 1036382 - 1037650 + | putative substrate-binding periplasmic transport protein TERM 1164 1037710 - 1037741 + F 100 -10.9 -4.57837 | overlap 1037712 GGTAATCGCTGTGAC GTGCTGATGTCAG CGGGAT CTGACGTCAGCTC TTTTTCACCACATAT TERM 1165 1037712 - 1037739 + F 100 -12.1 -3.90316 | overlap 1037710 TAATCGCTGTGACGT GCTGATGTCAG CGGGAT CTGACGTCAGC TCTTTTTCACCACAT YPA_0900 1037774 - 1039375 + | branched chain amino acid ABC transporter permease TERM 1166 1040347 - 1040364 + G 83 -3.3 -5.46657 | overlap 1040348 TGGTTCACCATGGCG ATGCCGG AATA CTGGCAA TTTTTTCTTGGCCTG YPA_0901 1039375 - 1040451 + | branched chain amino acid ABC transporter permease YPA_0902 1040448 - 1041284 + | putative ABC transport ATP-binding subunit TERM 1167 1041939 - 1041953 + G 100 -10 -4.67635 | GGGGATATGGCTATC CTGCTC GTG GAGCAG TTTTATGATTTTGCC YPA_0903 1041378 - 1042076 + | putative ABC transport ATP-binding subunit YPA_0904 1042191 - 1043048 + | hypothetical protein YPA_0905 1043072 - 1044487 + | putative pyridoxal-dependent decarboxylase TERM 1168 1044665 - 1044683 + T 72 -8.1 -3.83026 | ATGAGTCATGTCAGT GGCTGGT GGTGA GCCAGCC TTTGGTATCACGCCA YPA_0906 1045545 - 1044691 - | putative sulfurtransferase TERM 1169 1046478 - 1046467 - g 71 -5.8 -4.31737 | AAAACCACCAATAAA TCCC AACT GGGA GCAACCAAAGTCGTA YPA_0907 1046281 - 1046748 + | hypothetical protein YPA_0908 1046893 - 1047213 + | ABC type periplasmic choline/glycine/betaine binding protein TERM 1170 1047220 - 1047210 - f 71 -4 -4.7497 | overlap 1047217 CGGATTTATTAAAAA CTAA CCA TTAG CTGGGGGAGCCAGCC YPA_0909 1047474 - 1048628 + | putative ABC transport integral membrane subunit YPA_0910 1048625 - 1049563 + | putative ABC transport ATP-binding subunit YPA_0911 1049560 - 1050396 + | putative ABC transport integral membrane subunit TERM 1171 1051887 - 1051903 + G 71 -10.9 -3.13376 | overlap 1051872 1051886 1051885 1051881 TATTTCGCCGAATGC GGCCAAA GAG TTTGGCC TGGTTTCTTCCGTTT YPA_0912 1050856 - 1052190 + | arginine:agmatin antiporter TERM 1172 1054430 - 1054453 + G 71 -11.1 -2.81207 | overlap 1054429 CGGGGGAGAGTTTTG GTAGCCATG AAGAAC CATGGCTAC GTTATATCTTAAGTA YPA_0913 1052260 - 1054566 + | putative amino acid decarboxylase YPA_0914 1054902 - 1054684 - | hypothetical protein YPA_0915 1055902 - 1055012 - | hypothetical protein YPA_0916 1056061 - 1056153 + | hypothetical protein TERM 1173 1056145 - 1056163 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0917 1056167 - 1057189 + | transposase for insertion sequence IS100 TERM 1174 1057270 - 1057256 - g 77 -11.4 -3.3506 | overlap 1057247 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0918 1057189 - 1057968 + | transposase/IS protein TERM 1175 1058209 - 1058192 - T 100 -12.7 -5.0133 | GAGTGGCGTAAAAAA GCCGGGA ATAA TCCCGGC ATAATAAATACATTC YPA_0919 1059388 - 1058273 - | outer membrane protein C2 TERM 1176 1058522 - 1058535 + g 73 -5.3 -4.63218 | opp_overlap 1058510 1058522, overlap 1058510 ATATTGAGCCACTAA CTCAA TGTT TTGAG TTTTATTAGCAAAAC TERM 1177 1060549 - 1060539 - g 70 -2.4 -5.02476 | ATACCGGCCAAAAAA CCCC CCT GGGC TTGCCCATCCTGAAC TERM 1178 1060901 - 1060891 - g 73 -5.4 -4.65895 | GCGGCGATGGAAAAA GCAT CGA ATGC GCCGATTTCTAAATG dinG 1059658 - 1061838 + | ATP-dependent DNA helicase DinG TERM 1179 1061884 - 1061842 - T 84 -6.5 -4.93318 | gap 1, overlap 1061844 GATAAGCCATAAAAA TACACCTCCAAATGTCAG GGGGTTAT CCAACATTTGG-GGTGCA GTTCAAAGGGGCTGA TERM 1180 1061882 - 1061844 - T 71 -6.9 -4.07789 | gap 1, overlap 1061842 TAAGCCATAAAAATA CACCTCCAAATGTCAG GGGGTTAT CCAACATTTGG-GGTG CAGTTCAAAGGGGCT YPA_0921 1063345 - 1061906 - | catalase TERM 1181 1062031 - 1062011 - G 70 -9.7 -3.31501 | overlap 1062012 AGGAACTTGCGATAA CTCACCCGC AAT ACGGGTGAA CATGCGTTGATGCTC TERM 1182 1062030 - 1062012 - G 70 -11 -2.58579 | overlap 1062011 GGAACTTGCGATAAC TCACCCGC AAT ACGGGTGA ACATGCGTTGATGCT TERM 1183 1063071 - 1063086 + g 91 -5.4 -5.42862 | opp_overlap 1063071 GCCACAGTGGAGAAG CGGACA AACA TGTCTG TTTTTTTACCGATCT YPA_0922 1063706 - 1064248 + | hypothetical protein TERM 1184 1064460 - 1064487 + T 100 -15 -4.0342 | gap 1, opp_overlap 1064460 TGGGCTGACGGAAAA GGGCGCAT-TCCT ATC AGGATATGCGCCC TTATTATTGCTTACG TERM 1185 1064487 - 1064460 - T 100 -15 -4.18018 | gap 1, opp_overlap 1064460 TGGGCTGACGGAAAA GGGCGCAT-TCCT ATC AGGATATGCGCCC TTATTATTGCTTACG YPA_0923 1065713 - 1064505 - | tyrosine-specific transport protein YPA_0924 1066332 - 1067525 + | competence damage-inducible protein A TERM 1186 1067551 - 1067572 + T 95 -13 -3.20207 | opp_overlap 1067545 ATGTTAATATTTAGC CCAGGCGC GGAATA GCGCCTGG TTAATGAGTGCTATT YPA_0925 1068092 - 1067583 - | ecotin precursor YPA_0926 1068384 - 1068127 - | 2Fe-2S ferredoxin YfaE nrdB 1069518 - 1068388 - | ribonucleotide-diphosphate reductase subunit beta YPA_0928 1071969 - 1069681 - | ribonucleotide-diphosphate reductase subunit alpha TERM 1187 1070273 - 1070254 - G 71 -10.8 -3.03007 | overlap 1070269 AATACCTTGTGAATA CGTGGTTT CGTT AAACCACG GGCAAGCGCCTTGTT TERM 1188 1071078 - 1071061 - G 70 -8.4 -3.7941 | CATTGGGTAGAACAA CGTGGC CGCGCC GCCACG AACACCGCCCTGTGA TERM 1189 1072441 - 1072420 - R 81 -10.9 -3.27786 | gap 1, opp_overlap 1072414 1072413 1072435, overlap 1072412 GGGAAAAGCCAGGAA GAGCAGGTGC TTA GC-CCTGCTC CCAGTGGGTTCTACG YPA_0929 1073191 - 1072463 - | 3-demethylubiquinone-9 3-methyltransferase TERM 1190 1074079 - 1074058 - g 73 -5.9 -4.48263 | overlap 1074050 TATAGAAGATGAAAA CATCAGC ATTGAAGG GCTGATG GAGTATATCCCTGGC TERM 1191 1074130 - 1074110 - g 77 -11.9 -3.03771 | opp_overlap 1074108 1074105 CCAGACTTCCCAACA GCAGCCATT ATT AATGGCCGC CGTGGTATTGAAGAG YPA_0930 1073453 - 1076128 + | DNA gyrase subunit A TERM 1192 1076142 - 1076165 + F 77 -11 -2.81547 | overlap 1076140 AATAATGTTGCTCTG GCAGGTGCGG TTTA TTGCACCTGC TCATTCATCTGCGGC TERM 1193 1076264 - 1076215 - f 81 -5.2 -5.14563 | opp_overlap 1076217, overlap 1076217 CGTGTCATTAAAAAA CAGCCAGC-CAGTGAGCTTAAC GCCCATCA GTTAAGCA-ACTGAGCTGGCTT TTTTATCGGTTATCG TERM 1194 1076217 - 1076262 + F 100 -7.8 -5.3236 | opp_overlap 1076217 1076215 TGTCATTAAAAAACA GCCAGC-CAGTGAGCTTAAC GCCCATCA GTTAAGCA-ACTGAGCTGGC TTTTTTATCGGTTAT TERM 1195 1076262 - 1076217 - f 76 -7.8 -4.20707 | opp_overlap 1076217, overlap 1076215 TGTCATTAAAAAACA GCCAGC-CAGTGAGCTTAAC GCCCATCA GTTAAGCA-ACTGAGCTGGC TTTTTTATCGGTTAT TERM 1196 1076487 - 1076475 - g 100 -3.3 -5.95166 | CTTAACGAAAAAAAA GCCGA TAT TCGTC AGGAATATAACAACA TERM 1197 1076616 - 1076591 - g 81 -6.1 -4.96848 | opp_overlap 1076603 1076606, overlap 1076593 TCGGCTAGATAAAAA CGCCAGTGACA CTGA TGCCACTAGTG GCATGGTTATGAATA TERM 1198 1077031 - 1077043 + G 76 -3.3 -5.09762 | overlap 1077017 GCTTTGAGCAGAGTG TCCGC TTA GAGGA TTTTATTTCTTCCCG YPA_0931 1076316 - 1079189 + | hybrid sensory kinase in two-component regulatory system with RcsB and YojN TERM 1199 1079233 - 1079207 - T 100 -15.2 -3.83844 | TTCATTAATTAATAA GCCCAGTATTGC AGA GCAAAACTGGGC TTGAGAGTCGAGCGG YPA_0932 1079910 - 1079257 - | transcriptional regulator RcsB YPA_0933 1080485 - 1079913 - | putative two-component sensor protein like yojN TERM 1200 1079965 - 1079953 - G 76 -2.7 -5.14563 | opp_overlap 1079930 CTGGTGATGAAAAAA TCAAT CTG ACTGA TGCTATTTTCGATCT TERM 1201 1080192 - 1080204 + g 74 -7.7 -4.14193 | ACTGGTTTTTAGTTG CCTCT CAT AGAGG TTTATATCATCTTCT YPA_0934 1082605 - 1080653 - | hypothetical protein TERM 1202 1081435 - 1081449 + g 84 -4.2 -5.31456 | overlap 1081436 CACCGTGGTGCTGCT CTGCCA TAG TGGCAA TTTTTTGTAGATTCA YPA_0935 1083783 - 1082629 - | hypothetical protein TERM 1203 1084503 - 1084489 - H 100 -11.4 -5.626 | GACCGGAGAAAAAAA CCGGTC AGA GACCGG TCGTAACATTAACGA YPA_0936 1084886 - 1086001 + | outer membrane porin protein C TERM 1204 1086029 - 1086054 + F 100 -15.5 -3.78934 | opp_overlap 1086033, overlap 1086033 GTGTGAGTCCTGAGA GAAACGCGGTC ATTC GGCCGCGTTTC TTATTGTGCCCAGAA TERM 1205 1086050 - 1086033 - f 77 -8.3 -4.0371 | opp_overlap 1086029 1086033 GAGTCCTGAGAGAAA CGCGGTC ATTC GGCCGCG TTTCTTATTGTGCCC TERM 1206 1086033 - 1086050 + F 100 -10.5 -4.51812 | opp_overlap 1086033, overlap 1086029 GAGTCCTGAGAGAAA CGCGGTC ATTC GGCCGCG TTTCTTATTGTGCCC TERM 1207 1086090 - 1086072 - f 100 -16 -4.37092 | opp_overlap 1086072 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1208 1086072 - 1086090 + F 100 -16 -3.07307 | opp_overlap 1086072 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0937 1086203 - 1086472 + | putative transposase YPA_0938 1086469 - 1086642 + | transposase for the IS1541 insertion element TERM 1209 1086720 - 1086744 + T 93 -9.9 -4.32177 | opp_overlap 1086723, overlap 1086722 1086723 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTGAGCTAC TERM 1210 1086722 - 1086742 + T 100 -12.5 -3.76219 | opp_overlap 1086723, overlap 1086720 1086723 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTGAGCT TERM 1211 1086741 - 1086723 - T 100 -16 -4.8048 | opp_overlap 1086722 1086720 1086723 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTGAGC TERM 1212 1086723 - 1086741 + T 100 -16 -2.85008 | opp_overlap 1086723, overlap 1086722 1086720 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTGAGC TERM 1213 1087277 - 1087253 - T 85 -7.2 -4.90266 | opp_overlap 1087253 GGCACCAATTAAAAA CCTGTTATCT GAATA AGATAACGGG TTTTTGCTTTTCTCT TERM 1214 1087253 - 1087277 + T 100 -9.4 -5.15526 | opp_overlap 1087253 GGCACCAATTAAAAA CCTGTTATCT GAATA AGATAACGGG TTTTTGCTTTTCTCT TERM 1215 1087329 - 1087341 + T 77 -10.5 -3.22858 | overlap 1087328 1087338 GCTTATCCAGCATGT GCCCG GTG CGGGC TATTGCTCTCATTAC YPA_0939 1088598 - 1087432 - | beta-lactamase/D-alanine carboxypeptidase TERM 1216 1087574 - 1087586 + g 80 -4.7 -5.1101 | opp_overlap 1087571 1087574 TAAGTAATAAATCCA CCGCC ACC GCCGG TTTTTTGCATAATGC TERM 1217 1088090 - 1088108 + g 73 -3.1 -5.00616 | gap 1 CGATTATCTTTGGTC GGCCAGGT AAAC ACC-GGTC TTTTTTGCGGGCCGC YPA_0940 1088859 - 1088686 - | hypothetical protein TERM 1218 1088854 - 1088820 - G 78 -13.6 -2.65388 | opp_overlap 1088826 1088849, overlap 1088826 CAGGGAAGGGAGAAG CAAAAACCGCACTGGC GGG ACCGGTGCGGTTTGTG GTCACGACCAGAAAT TERM 1219 1088826 - 1088848 + g 87 -12.7 -3.96148 | opp_overlap 1088820 1088826 AGGGAGAAGCAAAAA CCGCACTGG CGGGA CCGGTGCGG TTTGTGGTCACGACC TERM 1220 1088848 - 1088826 - G 100 -11.2 -4.93968 | opp_overlap 1088826, overlap 1088820 AGGGAGAAGCAAAAA CCGCACTGGC GGG ACCGGTGCGG TTTGTGGTCACGACC YPA_0941 1090399 - 1088873 - | putative transport protein TERM 1221 1089010 - 1089020 + g 79 -6.8 -4.7373 | overlap 1088981 CGGGGATATCTGCCA TGGC ACC GCCA TTTTTAATACGCTCA TERM 1222 1090552 - 1090527 - H 76 -10.7 -2.71325 | opp_overlap 1090527, overlap 1090524 1090543 CGACGTAGAAAGCCA TGTATATCAAT AAAA ATTGATATACA TCAATTGAGAGGAAG TERM 1223 1090527 - 1090552 + H 76 -10.7 -2.52464 | opp_overlap 1090524 1090527 1090543 CGACGTAGAAAGCCA TGTATATCAAT AAAA ATTGATATACA TCAATTGAGAGGAAG TERM 1224 1090556 - 1090543 - H 77 -3.9 -5.16841 | opp_overlap 1090527, overlap 1090527 1090524 GTATATCAATAAAAA TTGAT ATAC ATCAA TTGAGAGGAAGACGC YPA_0942 1090815 - 1091804 + | hypothetical protein YPA_0943 1093665 - 1091878 - | putative methyl-accepting chemotaxis protein YPA_0944 1095007 - 1094072 - | outer membrane protease TERM 1225 1095102 - 1095092 - R 84 -2.6 -5.66989 | opp_overlap 1095092, overlap 1095083 TAAAGATTAAAAAAA TTTT AAA AAAA TTAATTTCTCATTGA YPA_0945 1095415 - 1095179 - | putative stress response protein TERM 1226 1095497 - 1095528 + G 70 -3 -4.77122 | overlap 1095494 1095490 1095525 1095526 GGCATAAATAAATTA CCGCAGGTGATT TGTTGGTT AATTACTGGCGG TTATTTTTTATATAA YPA_0946 1095458 - 1095571 + | hypothetical protein YPA_0947 1096343 - 1095621 - | putative prophage repressor protein YPA_0948 1096617 - 1097096 + | phage antitermination protein Q TERM 1227 1097184 - 1097172 - f 74 -4.9 -4.8743 | opp_overlap 1097176, overlap 1097164 TCTAAAATAAATAAA GTTAT TTA ATAAC ATTAAGTTAAATTGA YPA_0949 1097307 - 1098611 + | hypothetical protein YPA_0950 1098608 - 1099237 + | putative aldolase YPA_0951 1099320 - 1100132 + | putative transcriptional regulatory protein YPA_0952 1100108 - 1100902 + | hypothetical protein TERM 1228 1100931 - 1100957 + F 100 -8.1 -5.30189 | gap 1, overlap 1100936 TGTATAGCTAACTGT GATAGGCCACAC TTCG GTGTGGC-TGTC TTTTTTCATCTTATA TERM 1229 1100936 - 1100953 + F 90 -11.3 -3.7035 | overlap 1100931 AGCTAACTGTGATAG GCCACAC TTCG GTGTGGC TGTCTTTTTTCATCT TERM 1230 1101259 - 1101272 + F 100 -8.1 -6.04953 | AAGACCGATTAACTT CCTGC TGTG GCAGG TTTTTTTGTTTCTAT TERM 1231 1101411 - 1101427 + F 91 -3.5 -5.85737 | opp_overlap 1101407 1101410 1101411 GTAAACAATAAGAAG CCCCAGC ATC GACGGGG TTTTTTTATTGCTGT YPA_0953 1101533 - 1101823 + | putative bacteriophage protein YPA_0954 1101839 - 1102486 + | putative ATP-binding protein YPA_0955 1102491 - 1102685 + | putative bacteriophage protein TERM 1232 1103013 - 1103027 + G 71 -7.8 -4.06633 | CCATCAATACGGCGG CATCGG AGA CCGGTG TTATTTCACTTTATA YPA_0956 1102682 - 1104190 + | putative bacteriophage tail sheath protein YPA_0957 1104212 - 1104580 + | hypothetical protein TERM 1233 1104665 - 1104647 - g 84 -13.2 -3.38316 | TCACGACGCAAGCAA GACCACCT ATG AGGTGGTC GAACTCAGCGAACCT YPA_0958 1104582 - 1104881 + | hypothetical protein YPA_0959 1105002 - 1106495 + | putative bacteriophage coat protein TERM 1234 1106626 - 1106600 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 1106609, overlap 1106601 1106616 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1235 1106627 - 1106601 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 1106609, overlap 1106600 1106616 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1236 1106707 - 1106720 + F 100 -9.5 -5.4387 | GTCAATAACCTCGAA CCCGC TCCA GCGGG TTTTTTACTTTCTGT YPA_0960 1106762 - 1108168 + | putative bacteriophage protein YPA_0961 1108165 - 1109220 + | putative bacteriophage tail protein TERM 1237 1109301 - 1109312 + G 71 -7.2 -4.07568 | overlap 1109298 GCTGCTGGGGATCGG GCGG GTGA CCGC TTTTGACGACAGCAA YPA_0962 1109236 - 1109832 + | putative bacteriophage (baseplate assembly) protein YPA_0963 1109829 - 1110284 + | putative bacteriophage protein GP46 YPA_0964 1110288 - 1111424 + | putative bacteriophage protein YPA_0965 1111421 - 1111681 + | putative bacteriophage protein YPA_0966 1111621 - 1112025 + | putative bacteriophage protein TERM 1238 1112194 - 1112166 - g 70 -9.5 -3.25942 | opp_overlap 1112153 1112193, overlap 1112152 1112177 ACGCGCCGACAGTAA CGGCGAATTTACC GAC GGCAACGTCGCCG GTGGCGTTCCACCCA YPA_0967 1112122 - 1112901 + | putative bacteriophage tail fiber protein TERM 1239 1113018 - 1112994 - f 75 -7.2 -4.33621 | gap 1, opp_overlap 1112998, overlap 1112996 1112998 CAGTGAATTAATAAA TATACCGGGCA ATTA CGCCCGGT-TA GCTATCTACAAAGAA TERM 1240 1113017 - 1112996 - f 72 -7.9 -3.7642 | opp_overlap 1112998, overlap 1112994 1112998 GTGAATTAATAAATA TACCGGGCA ATTA CGCCCGGTT AGCTATCTACAAAGA TERM 1241 1112998 - 1113015 + F 74 -9.8 -3.15999 | opp_overlap 1112996 1112994 1112998 GAATTAATAAATATA CCGGGC AATTAC GCCCGG TTAGCTATCTACAAA TERM 1242 1113015 - 1112998 - f 80 -10.5 -3.45532 | opp_overlap 1112998, overlap 1112996 1112994 GAATTAATAAATATA CCGGGCA ATTA CGCCCGG TTAGCTATCTACAAA YPA_0968 1113199 - 1113939 + | LacI family regulatory protein TERM 1243 1115589 - 1115576 - g 74 -4.5 -4.84359 | TTATGTCGATAAAAA CGATG ATGG CACCG GTACAATGGCGCGTT YPA_0969 1114230 - 1115666 + | 6-phospho-beta-glucosidase TERM 1244 1115712 - 1115733 + T 100 -12.3 -4.8143 | opp_overlap 1115711 1115710 TTGAATTCAAGAAGG CCGTTCACC CTTT GGTGAGCGG TTTTTACCTTGTTAC YPA_0970 1116154 - 1115792 - | hypothetical protein TERM 1245 1115916 - 1115901 - G 71 -6.2 -4.34402 | opp_overlap 1115900 TCTTTCATATCAAAA GGATAA CCTA TTATCC CAGTTTTTAATTTAA YPA_0971 1116583 - 1116491 - | hypothetical protein YPA_0972 1117351 - 1116854 - | hypothetical protein YPA_0973 1117675 - 1117355 - | hypothetical protein TERM 1246 1117723 - 1117741 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_0974 1117745 - 1118767 + | putative transposase TERM 1247 1118848 - 1118834 - g 77 -11.4 -3.3506 | overlap 1118825 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_0975 1118767 - 1119546 + | transposase/IS protein YPA_0976 1120462 - 1119590 - | hypothetical protein TERM 1248 1120717 - 1120680 - R 87 -8.6 -4.5464 | overlap 1120681 TATATATAAGCAAAA GTATGTTGGTTCAGAT TGAACT AACTGAACCAACATAA AAACCTCGCATGTGA TERM 1249 1120716 - 1120681 - R 89 -12.1 -3.317 | overlap 1120680 ATATATAAGCAAAAG TATGTTGGTTCAGAT TGAACT AACTGAACCAACATA AAAACCTCGCATGTG TERM 1250 1121148 - 1121164 + r 72 -9.4 -3.17051 | overlap 1121146 CATTGAAATTATGCT GTGCCG CATCC CGGCAC TCTTGCTCATCCCAA TERM 1251 1121244 - 1121211 - R 100 -13.3 -3.91144 | opp_overlap 1121209 1121219, overlap 1121214 1121219 GCCACACTCCACAAA CGACAAAACCAACCC GAAT GGATTGGTTTTGTTG AGGTATTTGGTCGGC TERM 1252 1121241 - 1121214 - R 100 -13.6 -3.02186 | opp_overlap 1121209 1121219, overlap 1121211 1121219 ACACTCCACAAACGA CAAAACCAACCC GAAT GGATTGGTTTTG TTGAGGTATTTGGTC TERM 1253 1121236 - 1121219 - R 86 -7.7 -4.64846 | opp_overlap 1121209 1121219, overlap 1121214 1121211 CCACAAACGACAAAA CCAACCC GAAT GGATTGG TTTTGTTGAGGTATT TERM 1254 1121219 - 1121236 + r 73 -5.5 -4.6759 | opp_overlap 1121219 1121214 1121211, overlap 1121209 CCACAAACGACAAAA CCAACCC GAAT GGATTGG TTTTGTTGAGGTATT YPA_0978 1123229 - 1121433 - | hypothetical protein TERM 1255 1122333 - 1122319 - G 71 -5.6 -4.4572 | AACAGGCCAAATAAA CCGGTA TCT TGCCGG TTACCCGAACTGTAA YPA_0979 1123484 - 1123257 - | hypothetical protein YPA_0980 1123662 - 1124666 + | nucleoid-associated protein NdpA TERM 1256 1124721 - 1124692 - f 100 -18.1 -3.07816 | opp_overlap 1124692 1124699, overlap 1124699 TGCGTATTTAGCCAA TAAAAAACGCCGC ATCA GCGGCGTTTTTTA TTGTGCCCAGAAAAC TERM 1257 1124692 - 1124721 + F 100 -18.1 -3.28712 | opp_overlap 1124692 1124699, overlap 1124699 TGCGTATTTAGCCAA TAAAAAACGCCGC ATCA GCGGCGTTTTTTA TTGTGCCCAGAAAAC TERM 1258 1124699 - 1124714 + F 100 -11.8 -5.55769 | opp_overlap 1124699 1124692, overlap 1124692 TTAGCCAATAAAAAA CGCCGC ATCA GCGGCG TTTTTTATTGTGCCC TERM 1259 1124714 - 1124699 - f 100 -11.8 -5.4833 | opp_overlap 1124692 1124699, overlap 1124692 TTAGCCAATAAAAAA CGCCGC ATCA GCGGCG TTTTTTATTGTGCCC TERM 1260 1124736 - 1124754 + F 100 -16 -3.07307 | opp_overlap 1124736 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1261 1124754 - 1124736 - f 100 -16 -4.37092 | opp_overlap 1124736 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_0981 1124867 - 1125325 + | transposase for the IS1541 insertion element TERM 1262 1125403 - 1125427 + T 100 -9.9 -4.42806 | opp_overlap 1125406, overlap 1125405 1125406 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTCGGCGTCC TERM 1263 1125405 - 1125425 + T 100 -12.5 -3.81958 | opp_overlap 1125406, overlap 1125403 1125406 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTCGGCGT TERM 1264 1125406 - 1125424 + T 100 -16 -2.88452 | opp_overlap 1125406, overlap 1125405 1125403 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCGGCG TERM 1265 1125424 - 1125406 - T 100 -16 -4.8048 | opp_overlap 1125406 1125405 1125403 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCGGCG YPA_0982 1125748 - 1125464 - | 50S ribosomal protein L25 YPA_0983 1127667 - 1125910 - | putative DEAD box helicase family protein TERM 1266 1127357 - 1127338 - G 73 -5.8 -4.59027 | gap 1, overlap 1127340 AATCAGCAGAGAAAA TG-CGCTAT CAA ATAGCGGCA GATTACGGGCCACCG TERM 1267 1127625 - 1127615 - G 71 -6.8 -4.17048 | TGGCGTCGAAAATAA GCCA CCG TGGC ATCGACCGCTTCTCG YPA_0984 1128181 - 1128888 + | 16S rRNA pseudouridylate synthase A YPA_0985 1128992 - 1130191 + | bicyclomycin/multidrug efflux system YPA_0986 1130604 - 1130762 + | hypothetical protein TERM 1268 1130938 - 1130923 - f 95 -7.6 -5.00412 | AAATATAACGAAAAA TGGGAT CTGA ATCCCA AATCTACAGCTTCTG YPA_0987 1131158 - 1131502 + | hypothetical protein TERM 1269 1131518 - 1131539 + T 82 -5.8 -4.9792 | TACTTTTTAGCTGTT TGTCCGTG TGCTAT CGCGGGCA TTTTTGTCTAGGCTA YPA_0988 1133155 - 1131563 - | putative ABC transporter ATP-binding subunit TERM 1270 1132222 - 1132242 + g 73 -6.1 -4.58663 | opp_overlap 1132205 CCAGACTTTCGCCGG GCTTCAGGT CAA AACTGAGGC TTTTTAGCGCATAGT YPA_0989 1134185 - 1133157 - | putative ABC transporter integral membrane subunit YPA_0990 1135285 - 1134185 - | putative ABC transporter integral membrane subunit TERM 1271 1134789 - 1134808 + g 100 -10.7 -5.60993 | opp_overlap 1134788 CTCCAGGTATCGAAG GCGGTGC CATTGC GCACCGC TTTTTTTATCCCCAG YPA_0991 1137103 - 1135295 - | putative substrate-binding transport protein YPA_0992 1138657 - 1137185 - | hypothetical protein TERM 1272 1139306 - 1139290 - R 100 -8.7 -5.4833 | opp_overlap 1139290 TGAGCCAATAAAAAA CGCTGTC ATA AACAGCG TTTCAACGTTTGGTT TERM 1273 1139290 - 1139306 + r 70 -8 -3.65084 | opp_overlap 1139290 TGAGCCAATAAAAAA CGCTGT CATAA ACAGCG TTTCAACGTTTGGTT YPA_0993 1139937 - 1139353 - | putative outer membrane lipoprotein TERM 1274 1139549 - 1139559 + g 71 -6.8 -4.1552 | opp_overlap 1139549 CCTGGACGTAATTTA GTCC GCT GGAC TTTCTTGCCGAGATC TERM 1275 1139767 - 1139819 + g 75 -9.1 -3.82865 | opp_overlap 1139765 CGCTTCGAATTCATC CTGAGAGGCTTGCAGTAAAAGCCCA TCT TTGTCATTAACTGCACGCATCTCAG TTTGCGTATTATTTA YPA_0994 1141080 - 1140379 - | hypothetical protein YPA_0995 1142122 - 1141139 - | putative cobalamin synthesis protein TERM 1276 1141591 - 1141610 + g 70 -4.9 -4.68705 | overlap 1141601 1141604 ATTCGCTATGATACA GCGGCCG CGATAA TGGCTGC TTTTGTTGCCATTGT YPA_0996 1142381 - 1142764 + | hypothetical protein TERM 1277 1142787 - 1142815 + F 100 -15.5 -3.89524 | CAACATGTTTGGGCA TCACGGTTTATCG ACG TGATAAACCGTGA TTTATCACCTGAAGT YPA_0997 1142930 - 1143673 + | putative transcriptional regulatory protein TERM 1278 1143808 - 1143774 - T 89 -11.6 -3.4314 | opp_overlap 1143772 1143775, overlap 1143772 1143775 TAAACGCCAACAATA CCGATGAGCTGAAT AGCCTTG ATTCAGCTCATCGT CGTGTGTCTTAAGCC TERM 1279 1143775 - 1143807 + T 100 -15.1 -2.75975 | opp_overlap 1143774 1143772 1143775, overlap 1143772 AAACGCCAACAATAC CGATGAGCTGAAT AGCCTTG ATTCAGCTCATCG TCGTGTGTCTTAAGC TERM 1280 1143807 - 1143775 - T 100 -15.1 -2.65161 | opp_overlap 1143775 1143772, overlap 1143774 1143772 AAACGCCAACAATAC CGATGAGCTGAAT AGCCTTG ATTCAGCTCATCG TCGTGTGTCTTAAGC YPA_0998 1145289 - 1143817 - | putative D-mannonate oxidoreductase TERM 1281 1144539 - 1144522 - G 71 -6.9 -4.2123 | GACCCACTGAATAAA GGGTTCG CAGG CGATCCC ACAAGAGTCTGCGAC TERM 1282 1145536 - 1145524 - H 75 -3.4 -5.23292 | opp_overlap 1145524 TGACAGAAAATAAAA TTGG TAAGT CCAA TATTGATAATATTCG TERM 1283 1145818 - 1145836 + H 71 -3.2 -5.00467 | opp_overlap 1145813, overlap 1145834 CAGAAAAAGGCGGCT TTAACC GTTAGCG GGTTAA TTTTATTATTGTTGC TERM 1284 1146814 - 1146802 - g 85 -7.7 -4.83759 | AAGGAAATCCAAAAA CCTTC CAT GAAGG GGGGCATTTGCAAGG YPA_0999 1145874 - 1147067 + | mannonate dehydratase TERM 1285 1147123 - 1147093 - T 100 -14 -3.69482 | opp_overlap 1147102, overlap 1147094 TCAGTGAAGAGATAA CCGTTAAGGGCCGG TTT CCGGCTCTTAACGT AGAGAGACCCAATAG TERM 1286 1147122 - 1147094 - T 100 -17.5 -2.81207 | opp_overlap 1147102, overlap 1147093 CAGTGAAGAGATAAC CGTTAAGGGCCGG TTT CCGGCTCTTAACG TAGAGAGACCCAATA TERM 1287 1147102 - 1147114 + T 76 -10.5 -3.05844 | opp_overlap 1147094 1147093 AGATAACCGTTAAGG GCCGG TTT CCGGC TCTTAACGTAGAGAG YPA_1000 1147779 - 1147207 - | elongation factor P YPA_1001 1149127 - 1147883 - | tryptophan-specific transport protein TERM 1288 1149141 - 1149160 + H 76 -7.8 -4.22375 | opp_overlap 1149145 ATCTATTGCTCCTGA GATACCCG GCTG CGGGTAAC TTCTTTATATTAAGT YPA_1002 1149502 - 1149756 + | hypothetical protein YPA_1003 1150640 - 1149825 - | putative short chain oxidoreductase TERM 1289 1150485 - 1150463 - G 70 -11.3 -2.62613 | overlap 1150462 1150460 GTTCACGTGAAATAT CGGTGCAGA TCACT TCCGCACCG GTTGCCGCCAGCCCT TERM 1290 1150691 - 1150659 - R 76 -11.1 -2.52464 | opp_overlap 1150686 CTTCTCCTTAAGTCA GTGGGCAGCGCAGTG GCT CACCGCGCAGTCCCC GTAGGGCCTCTTCAG YPA_1004 1151601 - 1150651 - | putative D-isomer specific 2-hydroxyacid dehydrogenase family protein YPA_1005 1152755 - 1151613 - | hypothetical protein TERM 1291 1152897 - 1152915 + r 77 -11 -2.73735 | overlap 1152890 1152907 1152909 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPA_1006 1153663 - 1152878 - | transposase for insertion sequence IS1661 YPA_1007 1154253 - 1153717 - | insertion element IS1661 DNA-binding protein TERM 1292 1154233 - 1154287 + g 84 -13.8 -3.35046 | gap 1, opp_overlap 1154237 1154242 1154263, overlap 1154231 AAAAGGGTGTTTCAT TGAACCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAGTGCA TGTTTAGACCCCTAA TERM 1293 1154283 - 1154237 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 1154233 1154231, overlap 1154242 1154263 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCATGTTTAGACCC TERM 1294 1154278 - 1154242 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 1154233 1154231, overlap 1154237 1154263 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCATGTTTA TERM 1295 1154273 - 1154263 - H 75 -5.4 -4.88736 | opp_overlap 1154233 1154231, overlap 1154242 1154237 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAT TERM 1296 1154744 - 1154754 + G 79 -8.2 -4.2828 | overlap 1154743 GAGGCGGTTGCTGCG GCGC GTC GCGC TTTTCCTGCCTGGGC YPA_1008 1154552 - 1156048 + | putative aldehyde dehydrogenase TERM 1297 1156577 - 1156592 + G 71 -6.8 -4.24204 | gap 1, overlap 1156579 ACTGAAGTTTCGGAT GCCTCGG GGA CCG-GGC TTTTCGATGTACGTG YPA_1009 1156052 - 1157605 + | putative carbohydrate kinase YPA_1010 1157625 - 1158335 + | putative ribose 5-phosphate isomerase YPA_1011 1158459 - 1159547 + | putative periplasmic carbohydrate-binding transport protein TERM 1298 1159811 - 1159790 - g 70 -2.9 -4.8083 | gap 1, opp_overlap 1159794, overlap 1159791 1159793 1159794 GAATATCAGCAAAAA CTATGGCCCG GTG CAGGCCTT-G TGCGGCGTGACGACC TERM 1299 1160723 - 1160710 - g 74 -8.1 -4.07687 | opp_overlap 1160710 AGGCTCTGCCGAAAA GGCCA CGCA TGGCC TTCAATATTGGCATT YPA_1012 1159656 - 1161230 + | putative ABC transport ATP-binding subunit TERM 1300 1161977 - 1161991 + G 78 -3.5 -5.08601 | gap 1 ATTTCAGGGTTCCTT GCC-GC ACTT GCTGGC TTTTTGTTGGCATCG YPA_1013 1161266 - 1162264 + | putative ABC transport integral membrane subunit YPA_1014 1162832 - 1162377 - | putative Mut family protein YPA_1015 1163094 - 1164227 + | bifunctional fructose-specific PTS IIA/HPr protein TERM 1301 1164341 - 1164321 - g 79 -6.8 -4.59853 | TCAATCTGGTAAAAA CCGCCG GTCTGCATG CGGCGG GTAAAGGGATCAACG fruK 1164224 - 1165162 + | 1-phosphofructokinase YPA_1017 1165177 - 1166877 + | fructose-specific PTS system IIBC component TERM 1302 1166936 - 1166961 + F 100 -13.4 -5.30686 | opp_overlap 1166936 GTCAGCAGTCTGAAA TGCCAGTCAG TTAATT CTGACTGGCA TTTTTTATGGGTGTT TERM 1303 1166961 - 1166936 - f 100 -13.4 -3.58343 | opp_overlap 1166936 GTCAGCAGTCTGAAA TGCCAGTCAG TTAATT CTGACTGGCA TTTTTTATGGGTGTT TERM 1304 1167063 - 1167040 - f 71 -8.4 -3.53224 | opp_overlap 1167040 1167055, overlap 1167055 TATTTTTTTGTTAAA TTATTAAGAT AATA ATCTTAATAA GACTTAATCTTGTGC TERM 1305 1167633 - 1167654 + G 82 -6.7 -4.77036 | CTTTTTTATCGCTAT TATGATGGT CATC ATCATCATA TTTTTCATGGTAGGA YPA_1018 1167202 - 1167846 + | putative regulatory protein TERM 1306 1168233 - 1168205 - g 80 -4.5 -5.08831 | opp_overlap 1168204, overlap 1168193 1168207 TAATAAAAAAAATAA CGTTGTCACCTTT TTT AATGGTGACAGAG GCTTTATTGATGTCA YPA_1019 1167831 - 1168331 + | hypothetical protein YPA_1020 1168876 - 1169352 + | pH 6 antigen precursor (antigen 4) (adhesin) TERM 1307 1169361 - 1169402 + F 89 -6.7 -5.31855 | opp_overlap 1169364 1169365 1169367, overlap 1169364 1169365 ATTTTAAATAACGAG TAATCATAGAACATGATGG CTTG CTGTCATGTTCTATGTATG TTTTTGTTATTGATG TERM 1308 1169364 - 1169400 + F 86 -9 -4.27297 | gap 1, opp_overlap 1169364 1169365 1169367, overlap 1169361 1169365 TTAAATAACGAGTAA T-CATAGAACATGATGG CTTG CTGTCATGTTCTATGTA TGTTTTTGTTATTGA TERM 1309 1169365 - 1169398 + F 100 -14.1 -3.70836 | opp_overlap 1169364 1169365 1169367, overlap 1169364 1169361 TAAATAACGAGTAAT CATAGAACATGATGG CTTG CTGTCATGTTCTATG TATGTTTTTGTTATT TERM 1310 1169398 - 1169365 - f 71 -9.7 -2.60492 | opp_overlap 1169365 1169364 1169361, overlap 1169364 1169367 TAAATAACGAGTAAT CATAGAACATGATGG CTTG CTGTCATGTTCTATG TATGTTTTTGTTATT TERM 1311 1169418 - 1169452 + F 95 -14 -2.84192 | opp_overlap 1169442 TTTTTGTTATTGATG TTTTATTGTGAGTTTT TTT AAAATTCACAATAAAA TATCATGATAATGTG TERM 1312 1170180 - 1170162 - g 88 -3.8 -5.68438 | GGATGAAATAAAAAA TGGCAG CTATGTT CCGCCA TTCTCTTCTAGGGAT TERM 1313 1170182 - 1170194 + G 72 -4.1 -4.90079 | GCTATGTTCCGCCAT TCTCT TCT AGGGA TTTTATTATTCCGGT YPA_1021 1169479 - 1170300 + | chaperone protein PsaB precursor TERM 1314 1171072 - 1171084 + G 73 -3.3 -5.00884 | overlap 1171073 CCTTAGGGGAGAGTT ACACC CCA GGTGA TTTTTTCGACAGCAT YPA_1022 1170384 - 1172855 + | outer membrane usher protein PsaC precursor TERM 1315 1172908 - 1172932 + T 100 -11.4 -4.4715 | overlap 1172910 TCCCGTCAGGTTCAA TTCCCGCCAG GTTTA CTGGCGGGCA TTTTCTACGTTACAA TERM 1316 1172910 - 1172930 + T 93 -14 -2.56203 | overlap 1172908 CCGTCAGGTTCAATT CCCGCCAG GTTTA CTGGCGGG CATTTTCTACGTTAC YPA_1023 1173799 - 1172942 - | endonuclease IV TERM 1317 1173275 - 1173285 + g 86 -8.2 -4.67608 | opp_overlap 1173272 1173274 GGTATCAATACAGAC GCCG ACG CGGC TTTTATCTTCCACTC TERM 1318 1173899 - 1173876 - R 100 -13.2 -3.75332 | overlap 1173879 AGCGGTGAAGGGAAA TAAGGGCCGC GGAT ACGGCCCTTA AACGGTTTGTTTTAG TERM 1319 1173896 - 1173879 - R 89 -10.5 -4.0098 | overlap 1173876 GGTGAAGGGAAATAA GGGCCGC GGAT ACGGCCC TTAAACGGTTTGTTT YPA_1024 1175051 - 1173963 - | hypothetical protein TERM 1320 1176435 - 1176468 + G 84 -13.3 -3.44334 | gap 1, opp_overlap 1176444, overlap 1176420 TCGCGGCGAGTGATT GCT-GATCAACTCGCC AGC GGTGAGTTGGTCGAGC TTAATATTCCTTTAC YPA_1025 1175709 - 1176581 + | putative DNA-binding transcriptional regulator TERM 1321 1177754 - 1177770 + G 73 -8.7 -3.79419 | opp_overlap 1177754 1177753 GCGGCAGTGATGAAT GCGGTTA TTT TGACCGC TGTTTTATCGGCGGG YPA_1026 1176839 - 1178350 + | lysine transporter TERM 1322 1178400 - 1178381 - f 93 -12.2 -3.73072 | opp_overlap 1178381 AACGTGCGGATGAAA GGGCGATA ACGC TATCGCCC TTCTTTAGTGCCTAT TERM 1323 1178381 - 1178400 + F 100 -12.2 -4.01902 | opp_overlap 1178381 AACGTGCGGATGAAA GGGCGATA ACGC TATCGCCC TTCTTTAGTGCCTAT TERM 1324 1178430 - 1178469 + F 100 -17.4 -3.51924 | gap 1, opp_overlap 1178422 1178433 1178441 TAAATTAGCGGTAAC TGACGCCAATACCAGTACG AAA TGTGCTGGTATTGGCG-CA TTCTATCCGTGAACA TERM 1325 1178467 - 1178433 - f 100 -17.3 -2.53382 | opp_overlap 1178430, overlap 1178422 1178441 ATTAGCGGTAACTGA CGCCAATACCAGTAC GAAAT GTGCTGGTATTGGCG CATTCTATCCGTGAA TERM 1326 1178572 - 1178586 + F 70 -5.8 -4.26832 | overlap 1178567 TTATGGCAATCTTAT TGATAA GTA TTATCA TTTGCTTTATTGTTA YPA_1027 1178636 - 1179781 + | putative periplasmic substrate-binding transport protein TERM 1327 1180875 - 1180889 + G 78 -6.4 -4.8622 | overlap 1180876 CGCACGCATGATTTT TGGTGA AGA TCACCG TTTTTACTTACCAGC YPA_1028 1179976 - 1181058 + | iron ABC transporter YPA_1029 1181055 - 1181843 + | putative siderophore ABC transporter, ATP-binding subunit TERM 1328 1182969 - 1182986 + G 71 -5.7 -4.3534 | opp_overlap 1182957, overlap 1182957 TAATTATGCGGTTAC TCATAAT GGTT ATTATGA TTTTGGTAATTCAAC TERM 1329 1183445 - 1183433 - g 71 -10.5 -3.04398 | opp_overlap 1183432 1183432, overlap 1183432 CTGGTGGGGGAAAAG GCGGG CTT CCCGC ACTTATTCTGGGTAA YPA_1030 1182103 - 1184100 + | putative outer membrane receptor TERM 1330 1184275 - 1184325 + T 85 -9.3 -4.07885 | gap 1, overlap 1184276 TAGCTGAGCGCACTT ACCCGAATCACTTACTGGTTGTTG ACTT TAA-AATAAGTAAGTGATTCGGGA TTTTGACCAGCAATG TERM 1331 1184276 - 1184324 + T 95 -12.8 -3.04517 | gap 1, overlap 1184275 AGCTGAGCGCACTTA CCCGAATCACTTACTGGTTGTTG ACTT TAA-AATAAGTAAGTGATTCGGG ATTTTGACCAGCAAT YPA_1031 1184990 - 1184370 - | putative glutathione S-transferase-family protein YPA_1032 1185794 - 1185144 - | putative hydrolase TERM 1332 1185420 - 1185408 - G 75 -10.5 -3.37622 | AACACCGATTGATAA CGCCG TAT CGGCG GCAAAGTGTTTCGCG TERM 1333 1186703 - 1186672 - g 71 -7.2 -3.99324 | CCCCATTACCACAAA TCGCAGGCGCACCC AGTT GGACACGGCTGCAA GGCCCGAACCAATGG TERM 1334 1187170 - 1187195 + G 75 -10.5 -3.494 | TTTTAGGTGCGCGTT TGGATGCGGTG GTGC CACTGTATCCA TTATCTGCCGCATTG YPA_1033 1186281 - 1187348 + | putative iron/ascorbate oxidoreductase family protein YPA_1034 1187572 - 1188396 + | hypothetical protein TERM 1335 1189296 - 1189321 + G 70 -9.1 -3.54307 | gap 1 CGCTTGCACGTTGAT TTCAAC-CGTCC AGA GGGCGGGTTGAA TTTAGCCGAAGTGTT YPA_1035 1188393 - 1189379 + | putative ABC transport ATP-binding subunit TERM 1336 1189578 - 1189590 + G 71 -5.5 -4.55625 | CACTGGTCAATGTGG GGCGT TCA ATGCC TTTTGTGGTGTTACT YPA_1036 1189376 - 1190047 + | putative ABC transport integral membrane subunit YPA_1037 1190382 - 1191080 + | Serine-type D-Ala-D-Ala carboxypeptidase YPA_1038 1191903 - 1191124 - | transposase/IS protein TERM 1337 1191822 - 1191836 + g 77 -11.4 -3.3506 | overlap 1191835 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1039 1192925 - 1191903 - | transposase for insertion sequence IS100 TERM 1338 1192947 - 1192929 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_1040 1192978 - 1193109 + | 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase TERM 1339 1193240 - 1193263 + T 100 -7.5 -5.62219 | gap 1, opp_overlap 1193240 GCCGTCAATAAAAAA CCCCG-ACAT TATTC ATGTACGGGG TTTTTTTACTGTGTT TERM 1340 1193263 - 1193240 - T 95 -7.5 -5.4505 | gap 1, opp_overlap 1193240 GCCGTCAATAAAAAA CCCCG-ACAT TATTC ATGTACGGGG TTTTTTTACTGTGTT YPA_1041 1194043 - 1193291 - | phosphoglycerate mutase 1 YPA_1042 1194725 - 1194390 - | putative starvation-inducible protein galM 1195914 - 1195018 - | aldose 1-epimerase YPA_1044 1196087 - 1195935 - | hypothetical protein TERM 1341 1195984 - 1195996 + g 70 -3.3 -4.78839 | overlap 1195985 CCATTCATAAAGGTG ACGGT CAT ACCGC TTTTATTCTGCAATT YPA_1045 1197232 - 1196081 - | galactokinase YPA_1046 1198281 - 1197229 - | galactose-1-phosphate uridylyltransferase YPA_1047 1199307 - 1198291 - | UDP-galactose-4-epimerase TERM 1342 1198454 - 1198473 + g 73 -9.2 -3.76224 | opp_overlap 1198448 GGGGCAAAATGGTAG GCCAGTGG TTTA CCACAGGC TTTACTGAATGCGGC TERM 1343 1199117 - 1199106 - G 70 -4.4 -4.60487 | GATGAGCCGCAAAAA TGCT ATCG AGCA GTGTGCGATCACGGA YPA_1048 1200485 - 1199667 - | hypothetical protein TERM 1344 1200076 - 1200092 + g 78 -3.6 -5.09426 | ACAACCCAACCCATG CGCCCG ACTGA TGGGTG TTTTTTCACCTTGAA TERM 1345 1200542 - 1200552 + r 78 -2.4 -5.44119 | CCTAAATGACGGTTT AGCC TAA GGCA TTTTTTTGAGCTAAA YPA_1049 1202192 - 1200702 - | putative molybdenum transport ATP-binding protein ModF TERM 1346 1201123 - 1201108 - G 78 -4 -5.16572 | gap 1, overlap 1201119 1201122 ATCGAATCGAAAAAA CCG-GAT AAA ATCACGG TACGTACACGGGTGC TERM 1347 1201853 - 1201827 - G 70 -8.7 -3.59979 | overlap 1201829 GTGGCTGATTCCAAA TAGCGCTGCCA GTTGT TGACAGCGCTG CGGGTCACGGGCCGC TERM 1348 1201851 - 1201829 - G 77 -11.3 -3.38046 | overlap 1201827 GGCTGATTCCAAATA GCGCTGCCA GTTGT TGACAGCGC TGCGGGTCACGGGCC YPA_1050 1203162 - 1202302 - | DNA-binding transcriptional regulator ModE TERM 1349 1203264 - 1203303 + H 78 -9.6 -3.59279 | gap 1, opp_overlap 1203266 1203278, overlap 1203296 ATAACAGGGTTAATT CATTGCTG-ATATCATTTA CAG TAAATGATAGGCAGCAGTG TTGGTTATTGTGATA YPA_1051 1203359 - 1203511 + | hypothetical protein TERM 1350 1203562 - 1203585 + F 89 -7.4 -5.04175 | TCTCTGATTTCTGAA TGCCTGGCGT ATAA ACGTTGGGCA TTTTTGTATCATTCC TERM 1351 1203956 - 1203985 + G 71 -5 -4.44046 | gap 1 TCCACGCTGGCACGG CAGATTGAGCAGG GGGCA CCGGC-CGATCTG TTTATTTCCGCTGAC modA 1203746 - 1204525 + | molybdate transporter periplasmic protein TERM 1352 1204681 - 1204708 + G 73 -10.6 -3.19657 | overlap 1204676 1204674 1204684 GACAGTGTGATTCAT TTGCCACTGGTG CTGC CACCGGTGGTGA TTGGCTATCTCTTGT TERM 1353 1204684 - 1204705 + G 74 -12.3 -2.78422 | overlap 1204681 1204676 1204674 AGTGTGATTCATTTG CCACTGGTG CTGC CACCGGTGG TGATTGGCTATCTCT modB 1204525 - 1205220 + | molybdate ABC transporter permease protein TERM 1354 1205218 - 1205200 - f 100 -8.8 -5.01732 | overlap 1205201 AATTGGGGTAAAAAA CGCATGGG GGC CCCATGCT AGAACTGAATTTCAG TERM 1355 1205217 - 1205201 - f 100 -12.3 -3.60316 | overlap 1205200 ATTGGGGTAAAAAAC GCATGGG GGC CCCATGC TAGAACTGAATTTCA modC 1205214 - 1206293 + | molybdate transporter ATP-binding protein YPA_1055 1207170 - 1206349 - | phosphotransferase YPA_1056 1207461 - 1208465 + | 6-phosphogluconolactonase YPA_1057 1209930 - 1208650 - | adenosylmethionine--8-amino-7-oxononanoate transaminase TERM 1356 1208796 - 1208786 - G 74 -6.8 -4.36914 | CCCTGTTCGACAAAA CTGC GTT GCAG GCGGGCGACATTAAC YPA_1058 1210029 - 1211066 + | biotin synthase YPA_1059 1211066 - 1212217 + | 8-amino-7-oxononanoate synthase TERM 1357 1212728 - 1212739 + G 76 -3 -5.09426 | opp_overlap 1212738 GGTGGATGGTCAGCG TCAT GTAA ATGA TTTTTTGCCATTGCA YPA_1060 1212201 - 1213004 + | biotin synthesis protein BioC TERM 1358 1213210 - 1213223 + G 79 -5.3 -5.00616 | opp_overlap 1213210 CTCGGTTACTCACAA GTGAA TCCG TTCAC TTTTTTGGAAGCGAC bioD 1212997 - 1213719 + | dithiobiotin synthetase YPA_1062 1214581 - 1213871 - | putative amino acid transporter TERM 1359 1214244 - 1214224 - G 90 -9 -4.6856 | gap 1, opp_overlap 1214223 1214224 GAAATAGCTCAAAAA CCCAGCCCG GAAT CGGG-TGGG ATTTGTGGCGGCCTG TERM 1360 1214352 - 1214375 + g 74 -8.2 -4.09739 | CCTAACGCATTGCGT CTTTCAACAG GCTG CTGTTGCAAG TTTTGCGGGGGTTCA TERM 1361 1215779 - 1215760 - g 71 -7.8 -4.08216 | overlap 1215761 1215775 1215777 GGAGGGGCTGGAAAA TGGTCTGG CACA CCAGACCC TGCTAGGCGTAACAG TERM 1362 1215778 - 1215761 - g 74 -11.3 -3.04715 | overlap 1215760 1215775 1215777 GAGGGGCTGGAAAAT GGTCTGG CACA CCAGACC CTGCTAGGCGTAACA YPA_1063 1215671 - 1217686 + | excinuclease ABC subunit B YPA_1064 1217978 - 1218223 + | hypothetical protein YPA_1065 1219277 - 1218354 - | hypothetical protein moaA 1219764 - 1220789 + | molybdenum cofactor biosynthesis protein A moaC 1220890 - 1221369 + | molybdenum cofactor biosynthesis protein C moaD 1221366 - 1221611 + | molybdopterin synthase small subunit MoaE 1221611 - 1222066 + | molybdopterin synthase large subunit TERM 1363 1222409 - 1222422 + GF 85 -3.8 -5.38549 | overlap 1222407 TGGCTTGATTATTGC CCAG CTTGGT CTGG TTTTTGTTATTTCCG YPA_1070 1222209 - 1222622 + | hypothetical protein YPA_1071 1222579 - 1222920 + | hypothetical protein TERM 1364 1222983 - 1223003 + F 100 -11.2 -5.18726 | opp_overlap 1222983 GTTTGAGATAGTAAA GGACACCA AAATC TGGTGTCC TTTTTGTTGTGCCCA TERM 1365 1223003 - 1222983 - f 100 -11.9 -3.88498 | opp_overlap 1222983 GTTTGAGATAGTAAA GGACACCAA AAT CTGGTGTCC TTTTTGTTGTGCCCA TERM 1366 1223024 - 1223042 + F 100 -16 -3.07307 | opp_overlap 1223024 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1367 1223042 - 1223024 - f 100 -16 -4.36914 | opp_overlap 1223024 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1072 1223155 - 1223613 + | transposase for the IS1541 insertion element TERM 1368 1223687 - 1223719 + T 100 -11.3 -5.63517 | opp_overlap 1223694, overlap 1223693 1223694 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTTCTTTCACCA TERM 1369 1223693 - 1223713 + T 100 -12.5 -4.1934 | opp_overlap 1223694, overlap 1223687 1223694 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTTCTT TERM 1370 1223694 - 1223712 + T 100 -16 -3.07944 | opp_overlap 1223694, overlap 1223693 1223687 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTCT TERM 1371 1223712 - 1223694 - T 100 -16 -4.8048 | opp_overlap 1223694 1223693 1223687 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTCT YPA_1073 1225545 - 1223842 - | choline dehydrogenase YPA_1074 1227040 - 1225568 - | betaine aldehyde dehydrogenase TERM 1372 1226885 - 1226897 + g 73 -10.5 -3.3197 | CTGACCTTGTTTGGC GGCGG CTA CCGCC TTATCAACATCCTGT YPA_1075 1227694 - 1227098 - | transcriptional regulator BetI TERM 1373 1227517 - 1227533 + g 74 -4.4 -4.82901 | opp_overlap 1227509, overlap 1227509 TCAGATACCTCATTG TGGCTT CTAGC AGGCCA TTTTTGTCACGGAAA TERM 1374 1227740 - 1227755 + H 75 -10.4 -2.73542 | AATACTGTTATTCAT GCTGCC TATT GGCAGC TAGTTACCCGTTACG TERM 1375 1228127 - 1228145 + G 77 -9.5 -3.7319 | GGTGTTCTTTACGTC CGCGGGG TTGAT CCTCGCG TTCTGTCTTATGACT YPA_1076 1228059 - 1230107 + | choline transport protein BetT YPA_1077 1230339 - 1231232 + | DNA-binding transcriptional activator XapR YPA_1078 1232151 - 1231270 - | hypothetical protein YPA_1079 1232464 - 1233327 + | purine nucleoside phosphorylase TERM 1376 1234104 - 1234089 - g 76 -4.8 -4.9138 | opp_overlap 1234089 ATTATTTAAACAAAA GAAAAT GGCT ATTTTC TTCTTGTTGTGCCCA TERM 1377 1234143 - 1234125 - g 100 -16 -4.36914 | opp_overlap 1234125 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1378 1234125 - 1234143 + G 93 -16 -3.07307 | opp_overlap 1234125 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1080 1233466 - 1234266 + | hypothetical protein YPA_1081 1234256 - 1234714 + | transposase for the IS1541 insertion element TERM 1379 1234792 - 1234816 + F 100 -9.9 -4.4572 | opp_overlap 1234795, overlap 1234794 1234795 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGCCATGTT TERM 1380 1234794 - 1234814 + F 100 -12.5 -3.82628 | opp_overlap 1234795, overlap 1234792 1234795 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGCCATG TERM 1381 1234813 - 1234795 - f 100 -16 -4.8048 | opp_overlap 1234794 1234792 1234795 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCAT TERM 1382 1234795 - 1234813 + F 100 -16 -2.88854 | opp_overlap 1234795, overlap 1234794 1234792 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCAT YPA_1082 1234827 - 1235432 + | major facilitator superfamily xanthosine permease TERM 1383 1235479 - 1235511 + T 73 -5.6 -4.51238 | opp_overlap 1235481, overlap 1235480 1235481 ATAGACTCTCCAGAT AACCCCTGATTAAT CAAAT GTTAATCAGGGGAG TTTCTATTTTATCGG TERM 1384 1235480 - 1235510 + T 71 -9.1 -3.29658 | opp_overlap 1235481, overlap 1235479 1235481 TAGACTCTCCAGATA ACCCCTGATTAAT CAAAT GTTAATCAGGGGA GTTTCTATTTTATCG TERM 1385 1235481 - 1235509 + T 86 -12.6 -2.5671 | opp_overlap 1235481, overlap 1235480 1235479 AGACTCTCCAGATAA CCCCTGATTAAT CAAAT GTTAATCAGGGG AGTTTCTATTTTATC TERM 1386 1235509 - 1235481 - T 91 -11.9 -3.49102 | opp_overlap 1235480 1235479 1235481 AGACTCTCCAGATAA CCCCTGATTAA TCAAATG TTAATCAGGGG AGTTTCTATTTTATC zraP 1235993 - 1235520 - | zinc resistance protein TERM 1387 1236302 - 1236255 - H 100 -17.4 -4.76041 | opp_overlap 1236265 GACATTCAGTAAAAA CGGGTAATTATTACCCAC GGTAGCGGCGAT GTGGGTAATAATTACCCG CCACCAATTCATTGA TERM 1388 1236963 - 1236983 + GH 78 -4 -5.12474 | opp_overlap 1236957 1236963 GCGATGCAAGCAAAA GATATTCG CAATA CGATTATC TTTTTGTCTATTCTC YPA_1084 1236351 - 1238165 + | PAS TERM 1389 1238256 - 1238230 - gf 70 -7.2 -3.90588 | opp_overlap 1238213 1238212, overlap 1238213 CAGGCTTTAATGAAA GGCTGGGGTTAT CAA ACCACGCCAGCC CACAATGGATTAGAG TERM 1390 1239397 - 1239419 + GF 70 -10 -2.52464 | CAGTCTCTCGAATGG GTCGAAATAG ACG CTATTTTGAC TGCGTTGGAAAAGAC YPA_1085 1238125 - 1239516 + | helix-turn-helix, Fis-type YPA_1086 1239864 - 1240973 + | NADH:flavin oxidoreductase YPA_1087 1241885 - 1240974 - | LysR family transcriptional regulator TERM 1391 1242359 - 1242349 - H 90 -4 -5.64274 | opp_overlap 1242349, overlap 1242355 TCATGGATAAAAAAA CAAT CAT ATTG ATTTCCTCAATAACA YPA_1088 1242440 - 1242667 + | coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases YPA_1089 1242678 - 1243004 + | ethyl tert-butyl ether degradation EthD YPA_1090 1244149 - 1243043 - | ABC transporter multidrug efflux pump, permease subunit YPA_1091 1245337 - 1244162 - | ABC transporter multidrug efflux pump, permease subunit TERM 1392 1244415 - 1244396 - G 73 -5 -4.66609 | gap 1, opp_overlap 1244405, overlap 1244373 1244397 1244398 TACCGCAGGCAAAAA TG-CCGCGT TCA ACGCGATCA TCGCGGCGTTAAATT YPA_1092 1247084 - 1245342 - | ATPase YPA_1093 1248084 - 1247098 - | hypothetical protein TERM 1393 1247203 - 1247216 + g 70 -4.5 -4.63184 | GTCGGTGCGTAAATC CGGTG TTTC CACTG TTTTTGGCGTGAATT YPA_1094 1248846 - 1248136 - | putative DNA-binding transcriptional regulator YPA_1095 1249237 - 1250592 + | ATP-dependent RNA helicase RhlE TERM 1394 1250652 - 1250635 - f 76 -6.9 -4.431 | opp_overlap 1250635 TATTCACTGATAAAA CCGCTTC TTAG GAGGCGG TTAATAAGATGATCA TERM 1395 1250672 - 1250700 + F 100 -13.2 -4.86731 | opp_overlap 1250665 TAAGATGATCACCCC CACCCTGTGAGC GGTAA GCTGACAGGGTG TTTTCTTTGGGAGGG YPA_1096 1250698 - 1250988 + | hypothetical protein YPA_1097 1251044 - 1251277 + | transposase YPA_1098 1251806 - 1252006 + | hypothetical protein YPA_1099 1252155 - 1252709 + | molecular chaperone YPA_1100 1252827 - 1253141 + | hypothetical protein TERM 1396 1253194 - 1253222 + F 100 -9.6 -4.86731 | opp_overlap 1253182 TGAGATGGTCACTCC CACCTTGTGAGC GGTAA GCTGACAGGGTG TTTTCTTTGGAAGGG TERM 1397 1254498 - 1254519 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_1101 1253316 - 1254524 + | transposase for the IS285 insertion element TERM 1398 1254787 - 1254802 + F 70 -7.6 -3.7108 | opp_overlap 1254782 1254787, overlap 1254787 1254794 CGGCATTAGAGTAGA TCCGAA ACGT TTCGGA TTTAAATCTAAACGT TERM 1399 1254787 - 1254823 + F 89 -12.6 -2.87881 | gap 1, opp_overlap 1254782 1254787, overlap 1254787 1254794 CGGCATTAGAGTAGA TCCGAAACGTTTCGGAT TTAA ATCT-AAACGTTTCGGA TGTGTGACGAACTTA TERM 1400 1254823 - 1254787 - f 75 -10.4 -2.87468 | gap 1, opp_overlap 1254787 1254787 1254794, overlap 1254782 CGGCATTAGAGTAGA TCCGAAACGTTTCGGAT TTAA AT-CTAAACGTTTCGGA TGTGTGACGAACTTA TERM 1401 1255210 - 1255226 + G 76 -5.9 -4.60487 | CATCACGTCCACGAG TGTTGAA TAA TTCGACA TTTTTGGAAATGATA TERM 1402 1255663 - 1255653 - g 70 -4.6 -4.59773 | GGGTATCTGCAAAAA GCGG ATC CCAC TCGTCCTGGCGGTTA YPA_1102 1254999 - 1255886 + | hypothetical protein TERM 1403 1255878 - 1255896 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1103 1255900 - 1256922 + | transposase for insertion sequence IS100 TERM 1404 1257003 - 1256989 - g 77 -11.4 -3.3506 | overlap 1256980 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1104 1256922 - 1257701 + | transposase/IS protein YPA_1105 1257717 - 1257974 + | putative ThuR, regulatory protein for trehalosemaltose transport TERM 1405 1258081 - 1258114 + T 71 -9.7 -2.66748 | opp_overlap 1258086, overlap 1258086 CAGTGATAGAAAAGC AAAAATCCCGCTTAG TTTC CTAAACGGGATTTTC TAAATTTGGCTCCTC TERM 1406 1258109 - 1258086 - T 100 -11.8 -5.15526 | opp_overlap 1258081 1258086 ATAGAAAAGCAAAAA TCCCGCTTAG TTTC CTAAACGGGA TTTTCTAAATTTGGC TERM 1407 1258086 - 1258109 + T 95 -9.6 -4.51196 | opp_overlap 1258086, overlap 1258081 ATAGAAAAGCAAAAA TCCCGCTTAG TTTC CTAAACGGGA TTTTCTAAATTTGGC YPA_1106 1259186 - 1258374 - | hypothetical protein TERM 1408 1259135 - 1259156 + g 76 -5.8 -4.62772 | overlap 1259136 GTGCCTCATGCCATT GCGCAAGC ATCTCC GCTTGCGG TTTATTTGCTTTCCA TERM 1409 1259530 - 1259549 + r 76 -9.3 -3.49858 | opp_overlap 1259524, overlap 1259541 CTGAACTTATCAGCA GCCATGG CATTCA CCATGGC TTATGGTGTGCTTGA YPA_1107 1259860 - 1259576 - | hypothetical protein TERM 1410 1260030 - 1260044 + r 75 -5.6 -4.71318 | GAGGAGCAGGGAAGG CCGCTG CTC CAGAGG TTGTTTTTTGATCTT YPA_1108 1260948 - 1260097 - | hypothetical protein YPA_1109 1262769 - 1261051 - | putative ABC transporter ATP-binding protein YPA_1110 1263425 - 1263589 + | hypothetical protein YPA_1111 1264057 - 1263671 - | AraC family transcription regulator TERM 1411 1263988 - 1264002 + g 70 -9.2 -3.56594 | opp_overlap 1263988, overlap 1263999 CTTCAAGATAGATGA CCCGCC CTA GGTGGG TTTCGACCCATTTAC TERM 1412 1264164 - 1264190 + H 71 -6.6 -4.14243 | opp_overlap 1264164 AATGTGCGGTAAAGA CTTTTTGGCCGA GGT TTGGCAAAAGAG TTTTCAAGTGCCATA TERM 1413 1264326 - 1264336 + H 87 -5.4 -5.42259 | TCTGATAGCGGTTGT TGGT GTA ACCA TTTTTTTAAAGATGC YPA_1112 1264613 - 1264852 + | hypothetical protein YPA_1113 1265176 - 1264943 - | hypothetical protein YPA_1114 1265759 - 1266034 + | hypothetical protein TERM 1414 1266046 - 1266075 + F 95 -12.9 -3.10071 | opp_overlap 1266037 1266061, overlap 1266073 ATAAACGTGTCCCGA TGCTGGCACTACC AACA GGCAGTGTCAGCA TGTTACCTGCAATTT YPA_1115 1266297 - 1266596 + | hypothetical protein YPA_1116 1266639 - 1266950 + | hypothetical protein YPA_1117 1267187 - 1268560 + | aromatic amino acid transport protein TERM 1415 1268794 - 1268830 + T 89 -6.8 -5.28481 | opp_overlap 1268796, overlap 1268796 AATTCGCCCTCAACC AAGCATATAACCAT TTTAATATT ATGGTTATATGCTG TTTTTTAGTTAAATA TERM 1416 1268828 - 1268796 - T 74 -9.4 -3.33696 | opp_overlap 1268794 1268796 TTCGCCCTCAACCAA GCATATAACCAT TTTAATATT ATGGTTATATGC TGTTTTTTAGTTAAA TERM 1417 1268796 - 1268828 + T 88 -9.4 -4.26777 | opp_overlap 1268796, overlap 1268794 TTCGCCCTCAACCAA GCATATAACCAT TTTAATATT ATGGTTATATGC TGTTTTTTAGTTAAA YPA_1118 1269464 - 1268865 - | palmitoyl transferase for Lipid A YPA_1119 1270466 - 1270582 + | hypothetical protein YPA_1120 1270625 - 1270834 + | cold shock-like protein CspC TERM 1418 1270846 - 1270877 + T 86 -11.7 -3.34398 | opp_overlap 1270835 1270854, overlap 1270854 CTAATCAGCGTTTGC TGTAAAAACCCGC CTTTGT GCGGGTTTTTTCA TATTTGGGGAAACCC TERM 1419 1270869 - 1270854 - T 78 -7.5 -4.56597 | opp_overlap 1270846 1270854 CGTTTGCTGTAAAAA CCCGC CTTTGT GCGGG TTTTTTCATATTTGG TERM 1420 1270854 - 1270869 + T 91 -7.5 -5.32699 | opp_overlap 1270854, overlap 1270846 CGTTTGCTGTAAAAA CCCGC CTTTGT GCGGG TTTTTTCATATTTGG YPA_1121 1271680 - 1270925 - | hypothetical protein TERM 1421 1272011 - 1272025 + H 76 -7.8 -4.22858 | overlap 1272008 TAACGCCGCATCTGC CCGCTA TCT TGGCGG TTATTTATCTGTTAT rrmA 1272054 - 1272893 + | 23S rRNA methyltransferase A YPA_1123 1273393 - 1273115 - | hypothetical protein TERM 1422 1273610 - 1273579 - R 100 -9.5 -4.98255 | overlap 1273581 GGCCAATCATAAAAA CATTGCAGGTGAC ATGATA GCCACCCGCAATA TACCTCAAGAGGTGA TERM 1423 1273608 - 1273581 - R 88 -9.9 -4.11322 | overlap 1273579 CCAATCATAAAAACA TTGCAGGTGAC ATGATA GCCACCCGCAA TATACCTCAAGAGGT YPA_1124 1275696 - 1273615 - | hypothetical protein TERM 1424 1274523 - 1274541 + g 71 -6.6 -4.22214 | GGGCAGCTTCACTGG CGCGCAGG GCA TCTTCGCG TTGTTTTCGCTCACT TERM 1425 1276102 - 1276080 - g 74 -12 -2.82623 | opp_overlap 1276078 1276077 1276081, overlap 1276077 CTCTCTCCATAAGTA CGGAGCCGAA ACG TTCGGCTCCT CGTCTTTTGTGCGTC TERM 1426 1276081 - 1276101 + G 90 -15.5 -2.98789 | opp_overlap 1276080 1276077, overlap 1276078 1276077 TCTCTCCATAAGTAC GGAGCCGAA ACG TTCGGCTCC TCGTCTTTTGTGCGT TERM 1427 1276494 - 1276468 - g 71 -5.8 -4.36914 | overlap 1276453 1276451 1276469 CGCTTCGGTACAAAA CGTGCGGGGTTA TGG TAACCCATCACA GAATTACCGTATTCG TERM 1428 1277989 - 1277979 - g 74 -6.8 -4.33165 | CTAAACTGACTAAAA CCCA AAA TGGG ACGAACAACGGTAAC YPA_1125 1276040 - 1278331 + | ferrichrome receptor protein TERM 1429 1278399 - 1278437 + T 100 -24.8 -3.00946 | opp_overlap 1278403, overlap 1278403 AACAGGTGCTTTACT GAAATCCCCCGGCGATTT GAT ATATCGCCGGGGGATTTC TCATTTATCGCGCAG TERM 1430 1278433 - 1278403 - T 100 -19.8 -3.64703 | opp_overlap 1278403 1278399 GGTGCTTTACTGAAA TCCCCCGGCGATTT GAT ATATCGCCGGGGGA TTTCTCATTTATCGC TERM 1431 1278403 - 1278433 + T 100 -19.8 -4.17701 | opp_overlap 1278403, overlap 1278399 GGTGCTTTACTGAAA TCCCCCGGCGATTT GAT ATATCGCCGGGGGA TTTCTCATTTATCGC YPA_1126 1279061 - 1278492 - | hypothetical protein TERM 1432 1278755 - 1278766 + g 78 -2.2 -5.24449 | CCAACACCCAAAAAC TGTG ACTG CGCA TTTTTTCCGTTTCTG YPA_1127 1279951 - 1279490 - | hypothetical protein TERM 1433 1280128 - 1280105 - R 100 -8.8 -4.89567 | opp_overlap 1280108, overlap 1280108 GTCTAAAAGATAAAA TAACCGGGAG CAAG CCCCCGGTTT TGGATGAAGATAATC TERM 1434 1280108 - 1280125 + r 79 -8.3 -4.18494 | opp_overlap 1280105 1280108 TAAAAGATAAAATAA CCGGGAG CAAG CCCCCGG TTTTGGATGAAGATA TERM 1435 1280125 - 1280108 - R 100 -10.5 -4.52747 | opp_overlap 1280108, overlap 1280105 TAAAAGATAAAATAA CCGGGAG CAAG CCCCCGG TTTTGGATGAAGATA YPA_1128 1281038 - 1280151 - | mannose-specific PTS system protein IID TERM 1436 1280670 - 1280637 - G 70 -9.5 -3.33162 | overlap 1280613 TACGGTACCCCAGAA GATCGGGTCACCGAC ACCG GCCAGTGGCCCCATC AGACCCACTTTAATG YPA_1129 1281842 - 1281045 - | PTS system, mannose-specific IIC component YPA_1130 1282908 - 1281934 - | PTS system, mannose-specific IIAB component YPA_1131 1283679 - 1285073 + | hypothetical protein TERM 1437 1285087 - 1285114 + T 100 -17 -3.62046 | opp_overlap 1285081 AAGCAGAGAGTGGAA CCTCAGGGGCGC TTCG GCTCCCCTGAGG TTATTGACAACGTAC YPA_1132 1285642 - 1285175 - | homoprotocatechuate degradative operon repressor TERM 1438 1285600 - 1285590 - G 87 -4.6 -5.42862 | ATAGGCCGAAAAAAA GCCA TAG CGGC TTCACGAGCCTGCAA TERM 1439 1285887 - 1285863 - H 78 -10.3 -3.34398 | opp_overlap 1285848 1285863 1285866, overlap 1285861 1285866 TTGTTTTTTTAAAGA CAATTTATTTA TTG TAAATAAATTG TTATCAAGATCACGA TERM 1440 1285863 - 1285887 + H 78 -10.3 -3.31144 | opp_overlap 1285863 1285861 1285866, overlap 1285848 1285866 TTGTTTTTTTAAAGA CAATTTATTTA TTG TAAATAAATTG TTATCAAGATCACGA YPA_1133 1286026 - 1286658 + | hypothetical protein YPA_1134 1286655 - 1287419 + | 5-carboxymethyl-2-hydroxymuconate delta-isomerase TERM 1441 1288247 - 1288265 + G 74 -2.3 -5.06414 | CTCAATGGTGAACGT TGCACGG CGGGT TCGCGCA TTTTTATTCAAGAGA YPA_1135 1287416 - 1288813 + | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPA_1136 1288932 - 1289789 + | 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPA_1137 1289814 - 1290212 + | 5-carboxymethyl-2-hydroxymuconate delta-isomerase TERM 1442 1290819 - 1290807 - g 71 -10.5 -3.10344 | opp_overlap 1290814 GCGTGATTGAAGAGA GCGGC GTT GCCGC GGCGGTATTGAATCA YPA_1138 1290206 - 1291009 + | 2-oxo-hept-3-ene-1,7-dioate hydratase TERM 1443 1291085 - 1291068 - g 91 -2.7 -5.72207 | CTGAAAGCAAAAAAA CCACAAA TTGG CTTATGG CTAGGTTTGTGTAGC YPA_1139 1291020 - 1291826 + | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 1444 1291920 - 1291905 - g 76 -3.2 -5.06414 | GCCGGTCAATAAAAA CACACC ATTA AGTGCG CAGCAGCAGTCCGTC TERM 1445 1292625 - 1292595 - g 75 -10.5 -3.36569 | overlap 1292593 1292596 1292621 GCAATTGGCGAAACA GGCGGATTATGGT GCCTT ACCACAATCCGCG ATGTGGCGGGAAATT TERM 1446 1292624 - 1292596 - g 81 -14 -2.6162 | overlap 1292595 1292593 1292621 CAATTGGCGAAACAG GCGGATTATGGT GCCTT ACCACAATCCGC GATGTGGCGGGAAAT YPA_1140 1291852 - 1293219 + | putative 4-hydroxyphenylacetate permease YPA_1141 1293287 - 1294849 + | 4-hydroxyphenylacetate 3-monooxygenase YPA_1142 1294870 - 1295292 + | 4-hydroxyphenylacetate 3-monooxygenase coupling protein TERM 1447 1295292 - 1295271 - T 71 -9.5 -2.94126 | AACGATAGGTACACA TCACACAGA TCGT TCTGCGTGA GCAAGGCCATGGTCT TERM 1448 1295349 - 1295388 + T 100 -15.2 -3.62046 | opp_overlap 1295349 CGGTGATGGTGTAAA CCTCTAATGCCCGTCA TATTTAAC TGACGTGCATTAGAGG TTGTTGACAAAGTGC TERM 1449 1295388 - 1295349 - T 100 -15.2 -3.55444 | opp_overlap 1295349 CGGTGATGGTGTAAA CCTCTAATGCCCGTCA TATTTAAC TGACGTGCATTAGAGG TTGTTGACAAAGTGC TERM 1450 1295476 - 1295458 - T 100 -8.8 -4.82901 | opp_overlap 1295472 TTCCCTGCATAAAAA TAGCCCTC CCT GGGGGCTA GCCGCGCCATCCTTT TERM 1451 1295645 - 1295627 - T 78 -2.4 -5.47218 | overlap 1295631 TGTCAGCGAAAAAAA TCAAGTAC ACT GCACTTTA ATCGCCAGGCCACCA YPA_1143 1296991 - 1295627 - | L-serine dehydratase TERM 1452 1296558 - 1296546 - G 71 -5.5 -4.56607 | opp_overlap 1296550, overlap 1296550 TCATCAACGATAAAA CCACC GCC GATGG AGTAGTATGTTTTGC TERM 1453 1297288 - 1297308 + r 70 -7.5 -3.79993 | TTCTAGTTATTCAGC TACGGGGTC AAT GGCCCGGTA TATTTTGGTCTCTAA TERM 1454 1297690 - 1297675 - R 86 -11.8 -3.07962 | opp_overlap 1297675 TGTCACAGGTTAACA GCCGCC AAAT GGCGGC TTTATGAGTCAAATA TERM 1455 1297675 - 1297690 + r 100 -11.8 -3.92373 | opp_overlap 1297675 TGTCACAGGTTAACA GCCGCC AAAT GGCGGC TTTATGAGTCAAATA YPA_1144 1298298 - 1297699 - | hypothetical protein YPA_1145 1299671 - 1298295 - | para-aminobenzoate synthase component I YPA_1146 1299836 - 1300093 + | hypothetical protein TERM 1456 1300156 - 1300183 + T 87 -8.5 -4.49958 | opp_overlap 1300156, overlap 1300160 ATTGATAGATAAAAA TAAACCCGCTG GCTGAA TGGCGGGTTTA TTTATTTGCTAGCGT TERM 1457 1300183 - 1300156 - T 89 -7.1 -5.04597 | opp_overlap 1300156 1300160 ATTGATAGATAAAAA TAAACCCGC TGGCTGAATG GCGGGTTTA TTTATTTGCTAGCGT TERM 1458 1300160 - 1300179 + T 74 -4.9 -4.80736 | opp_overlap 1300156, overlap 1300156 ATAGATAAAAATAAA CCCGCTG GCTGAA TGGCGGG TTTATTTATTTGCTA purT 1301400 - 1300219 - | phosphoribosylglycinamide formyltransferase 2 TERM 1459 1300359 - 1300399 + g 72 -9.8 -3.37975 | gap 1, overlap 1300380 ATAACCGAATCTGTG TATCGCCTATC-AGGGCAG TTTC CAGCCCGCGATAGGTGATA TTCTGGCTGGTCAGT YPA_1148 1301713 - 1303095 + | ATP-dependent RNA helicase DbpA YPA_1149 1303189 - 1303509 + | hypothetical protein YPA_1150 1303549 - 1303857 + | hypothetical protein YPA_1151 1303949 - 1304374 + | hypothetical protein TERM 1460 1304447 - 1304467 + F 72 -9.7 -2.83112 | opp_overlap 1304437 AATAACCCGCTATGT TTGAGGGCA TAT TGCCCTCCA TCTGGTCAATTCAAT YPA_1152 1304684 - 1306735 + | oligopeptidase B TERM 1461 1306998 - 1306981 - f 100 -9.8 -5.66229 | opp_overlap 1306981 ATGAACAATAAAAAA CCCGCC GATAAT GGCGGG TTAACTCACGAAACG TERM 1462 1306981 - 1306998 + F 76 -10.5 -3.05384 | opp_overlap 1306981 ATGAACAATAAAAAA CCCGCCG ATAA TGGCGGG TTAACTCACGAAACG YPA_1153 1307472 - 1307585 + | hypothetical protein TERM 1463 1307577 - 1307595 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1154 1307599 - 1308621 + | transposase for insertion sequence IS100 TERM 1464 1308702 - 1308688 - g 77 -11.4 -3.3506 | overlap 1308679 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1155 1308621 - 1309400 + | transposase/IS protein YPA_1156 1309439 - 1310368 + | proline iminopeptidase YPA_1157 1310658 - 1310428 - | DNA polymerase III subunit theta TERM 1465 1311212 - 1311193 - g 70 -2.2 -5.00616 | gap 1, opp_overlap 1311178, overlap 1311196 TGCCTTTTTAAAAAA GCAT-TCTC AAG AAGAAATGC AACATATGGAACGTT YPA_1158 1311059 - 1311568 + | ferritin TERM 1466 1311589 - 1311617 + F 100 -10.3 -4.47456 | ATTGAGAAAATATTC GCCGCGGTACT ATTATTG GGTACTGCGGC TTTGTTGTTGCCTAT TERM 1467 1311640 - 1311652 + F 75 -3.3 -5.18715 | overlap 1311641 TTGCCTATCCCTCCC CGCGA TCC TCGCC TTTTCTTGTTTTTCT YPA_1159 1311975 - 1312361 + | putative copper resistance protein TERM 1468 1312413 - 1312439 + G 77 -12.4 -3.03903 | overlap 1312415 TTCTGCACTTTATGG CAGTGATGCTGA TGT TTGGCATCACTG TATTCACCGCCTTTT YPA_1160 1312364 - 1313248 + | putative copper resistance protein D YPA_1161 1313345 - 1313686 + | hypothetical protein TERM 1469 1313915 - 1313942 + T 100 -7.8 -5.77856 | AGAGCCATTTCCCTA GACCGAATATCA GGAA TCGTATTCGGTC TTTTTTTAATTTATT TERM 1470 1314072 - 1314089 + T 70 -5.5 -4.57073 | ATGAGTCATTTTCAT CGACTTG TGGC CAAGCCG TTTTTGGGCGAACTG TERM 1471 1314202 - 1314185 - T 75 -8.4 -3.89336 | opp_overlap 1314184 TTAACCAAAGCGAAA CTGGGC AATTAA GCCCAG CCTATTTCAGTCATA YPA_1162 1314535 - 1314209 - | putative acyl carrier protein YPA_1163 1314987 - 1314529 - | hypothetical protein TERM 1472 1314725 - 1314738 + g 78 -2.3 -5.27476 | overlap 1314726 CATGTAGGTAGCGAC ATCCC AAAT GGGAA TTTTGTTTTCTTAAA TERM 1473 1314775 - 1314789 + g 70 -4.2 -4.65078 | overlap 1314766 TCGTGCCGCTTTGGA GGCGTA TGA TGTGCC TTTTGTTGCACCTAT TERM 1474 1316276 - 1316263 - g 70 -9.5 -3.21218 | ATTCGTCAGCAGCAA CGGGC GATG GCCCG TCGTCGGATGATGGT flhB 1315519 - 1316679 + | flagellar biosynthesis protein FlhB TERM 1475 1316957 - 1316945 - gf 78 -9.1 -3.78775 | opp_overlap 1316944 1316941 GCGTCTATCACTAAA CGTGG CTT CCACG CGTATTATTCTGATG TERM 1476 1317240 - 1317228 - gf 74 -2.6 -5.17576 | GATGAAGCGAAAAAA CGCC GCTCT GACG TTACGCAAGAGGCTG TERM 1477 1317686 - 1317673 - gf 76 -6.7 -4.42062 | overlap 1317678 TACGTGGTAAACAAA CACAG CAGC CTGTG GCAGTAGAAGCACCC TERM 1478 1317708 - 1317696 - gf 71 -9.1 -3.40403 | CCTGTGGCAGTAGAA GCACC CGT GGTGC AAGATCAGCAACAGG YPA_1165 1316679 - 1318001 + | flagellar biosynthesis protein FlhA YPA_1166 1317964 - 1318758 + | flagellar biosynthesis/export protein FlhA YPA_1167 1318758 - 1319180 + | flagellar protein FlhE precursor TERM 1479 1320707 - 1320725 + G 93 -16 -3.07307 | opp_overlap 1320707 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1480 1320725 - 1320707 - g 100 -16 -4.37092 | opp_overlap 1320707 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1168 1319844 - 1320848 + | putative invasin YPA_1169 1320838 - 1321296 + | transposase for the IS1541 insertion element TERM 1481 1321370 - 1321402 + F 100 -11.3 -4.26076 | opp_overlap 1321377, overlap 1321374 1321376 1321377 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTGGTAAAGATAA TERM 1482 1321374 - 1321398 + F 100 -9.9 -4.72007 | opp_overlap 1321377, overlap 1321370 1321376 1321377 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTGGTAAAG TERM 1483 1321376 - 1321396 + F 100 -12.5 -3.97149 | opp_overlap 1321377, overlap 1321374 1321370 1321377 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTGGTAA TERM 1484 1321377 - 1321395 + F 100 -16 -2.97205 | opp_overlap 1321377, overlap 1321376 1321374 1321370 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGTA TERM 1485 1321395 - 1321377 - f 100 -16 -4.8048 | opp_overlap 1321376 1321374 1321370 1321377 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGTA YPA_1170 1321386 - 1323458 + | hypothetical protein TERM 1486 1323597 - 1323567 - T 100 -17 -3.51161 | opp_overlap 1323567, overlap 1323570 CAAACGTCCAGAGAA CAACGCCGCTCA GGTTAAT TGAGCGGCGTTG TTTTTTTAAAAGGAT TERM 1487 1323567 - 1323597 + T 100 -17.7 -5.40474 | opp_overlap 1323567 1323570 CAAACGTCCAGAGAA CAACGCCGCTCAG GTTAA TTGAGCGGCGTTG TTTTTTTAAAAGGAT TERM 1488 1323594 - 1323570 - T 100 -12.9 -3.885 | opp_overlap 1323567, overlap 1323567 ACGTCCAGAGAACAA CGCCGCTCA GGTTAAT TGAGCGGCG TTGTTTTTTTAAAAG YPA_1171 1324088 - 1323648 - | flagella synthesis protein FlgN YPA_1172 1324409 - 1324107 - | anti-sigma28 factor FlgM flgA 1325315 - 1324560 - | flagellar basal body P-ring biosynthesis protein FlgA flgB 1325497 - 1325910 + | flagellar basal body rod protein FlgB flgC 1325916 - 1326320 + | flagellar basal body rod protein FlgC flgD 1326335 - 1327012 + | flagellar basal body rod modification protein TERM 1489 1327431 - 1327455 + G 80 -4.9 -5.1287 | overlap 1327432 1327433 CCACTAATCGTCGTT TGGATCTGGCT ATC AGCCAGAACGG TTTTTTCCGTATGCA flgE 1327214 - 1328500 + | flagellar hook protein FlgE flgF 1328522 - 1329151 + | flagellar basal body rod protein FlgF YPA_1179 1329132 - 1329830 + | flagellar basal-body rod protein FlgG TERM 1490 1329867 - 1329833 - f 72 -9.8 -2.74144 | overlap 1329832 GGCTCAGCTGTAAAC CTGCTTTCGGGGGGCA TCA TGCCCCCTGATCGCCG CAGCATAATAGGTCT flgH 1329974 - 1330663 + | flagellar basal body L-ring protein flgI 1330678 - 1331787 + | flagellar basal body P-ring protein flgJ 1331787 - 1332731 + | peptidoglycan hydrolase TERM 1491 1334059 - 1334042 - g 72 -9.9 -3.38178 | GAACCAATTCCAGAA CGCAGAT AAAT ATCTGCG GGATATGGATGACGG TERM 1492 1335025 - 1335040 + G 70 -8.2 -3.76402 | opp_overlap 1335017 GTAAAACCACCTTGT CCGGTG CTTA CGCCGG TTTAGTCAGTAACGT flgK 1333602 - 1335266 + | flagellar hook-associated protein FlgK TERM 1493 1336035 - 1336025 - g 85 -4 -5.40072 | TGCTGCGGAAAAAAA TATC TTT GATA CCATTGATACGGTAC TERM 1494 1336078 - 1336066 - g 70 -3.3 -4.77157 | TGAATTCATTAAAAA CCCCG CTG CAAGG AGCCTCTGACGAGGT flgL 1335372 - 1336385 + | flagellar hook-associated protein FlgL YPA_1185 1337391 - 1336414 - | putative transcriptional regulatory protein YPA_1186 1337633 - 1339699 + | short chain dehydrogenase YPA_1187 1339829 - 1340887 + | putative sugar transport system permease protein TERM 1495 1341741 - 1341767 + G 88 -14.4 -3.4252 | opp_overlap 1341737 1341736 1341734 ATCCTAAAGATGCCA GCCTGGCGATGG ATA CCGTCGCCAAGC TTCTGCTCGATAAAA TERM 1496 1341799 - 1341785 - g 86 -5.6 -5.24129 | CTGCTCGATAAAAAA CCCCTC ACT GATGGG ATGAATCTGGGGGTG YPA_1188 1340930 - 1341925 + | putative sugar-binding periplasmic protein YPA_1189 1341991 - 1343568 + | putative sugar ABC transporter, ATP-binding protein YPA_1190 1343571 - 1344593 + | putative sugar ABC transporter, permease TERM 1497 1345289 - 1345305 + G 71 -7.9 -4.11216 | GTTTTTCCTGAACCG CGGGGTG GGC CACACCG TTTTCAAAATGGGGG YPA_1191 1344642 - 1345601 + | putative sugar kinase TERM 1498 1345825 - 1345808 - T 87 -8.3 -4.41548 | overlap 1345819 CGAGAGGTCAGAAAA GGGGGGG TAAA CCCCGCC GAAACGGGGCGATAA TERM 1499 1345834 - 1345819 - T 71 -8.2 -3.55203 | overlap 1345808 AAAAGGGGGGGTAAA CCCCGC CGAA ACGGGG CGATAAGCAGCGACA YPA_1192 1346278 - 1345859 - | hypothetical protein YPA_1193 1346691 - 1346323 - | hypothetical protein fliR 1347494 - 1346712 - | flagellar biosynthesis protein FliR fliQ 1347766 - 1347497 - | flagellar biosynthesis protein FliQ fliP 1348612 - 1347872 - | flagellar biosynthesis protein FliP YPA_1197 1349229 - 1348693 - | flagellar protein FliO TERM 1500 1349072 - 1349046 - G 76 -12.2 -3.02144 | opp_overlap 1349044 1349043 CCACCTGCGTTAACA CCCCCCCTGC AGGCATG GCCGGGGGGG CGGCGCTTGATTGCG fliN 1349645 - 1349229 - | flagellar motor switch protein FliN TERM 1501 1349533 - 1349552 + g 76 -3.4 -5.1485 | overlap 1349537 AGCGATTTAAAGACG CCTTCGGT TGTG GCCGTGGG TTTTTCTGTTGCTTG fliM 1350643 - 1349642 - | flagellar motor switch protein FliM TERM 1502 1350312 - 1350322 + g 76 -8.2 -4.18018 | opp_overlap 1350305 ACGAATAGCGCAGTA CCGC GTA GCGG TTTTAGATGCACCAG fliL 1351119 - 1350649 - | flagellar basal body-associated protein FliL YPA_1201 1352738 - 1351386 - | flagellar hook-length control protein FliK fliJ 1353181 - 1352735 - | flagellar biosynthesis chaperone fliI 1354801 - 1353281 - | flagellum-specific ATP synthase fliH 1355414 - 1354698 - | flagellar assembly protein H fliG 1356399 - 1355407 - | flagellar motor switch protein G fliF 1358108 - 1356396 - | flagellar MS-ring protein TERM 1503 1357972 - 1357954 - G 77 -11 -3.3573 | overlap 1357943 TAAAGGACGCGATAA TCCGGGCT TTT AGCCCAGA GCATCAAGGCGACAA TERM 1504 1358555 - 1358537 - g 70 -4.5 -4.72272 | gap 1, overlap 1358538 1358539 CGGGGTCAGCAAAAA CCCTGCCC GCAG AGGC-GGG CTTCGCCAGTGAACT fliE 1358461 - 1358772 + | flagellar hook-basal body protein FliE YPA_1208 1359192 - 1359371 + | hypothetical protein YPA_1209 1359382 - 1359858 + | hypothetical protein TERM 1505 1359878 - 1359893 + T 80 -6.1 -4.8066 | opp_overlap 1359878 CGTATGAGATATCAA CCCAC TTAGCT GTGGG TTTTTGCGTTATCTT YPA_1210 1360655 - 1360044 - | putative glycosidase YPA_1211 1361721 - 1360816 - | hypothetical protein YPA_1212 1363771 - 1361858 - | hypothetical protein TERM 1506 1361897 - 1361910 + g 100 -6.7 -5.38549 | TTTACTCTCCATCGC TGCTC TGGC GAGCA TTTTTGTTATTTCAG TERM 1507 1362308 - 1362289 - G 72 -3.6 -4.79223 | overlap 1362292 GTACAGGATTAAAAA TATTGAAG TTAT CTTCATTA ACCTGCAACGATGGC TERM 1508 1363035 - 1363046 + g 70 -2.2 -4.90778 | opp_overlap 1363025, overlap 1363024 1363032 ATAATCGCCTGGCTG CCTG GTGG TAGG TTTTGTTTAGCTAAA TERM 1509 1363425 - 1363413 - G 100 -4.7 -5.80817 | overlap 1363414 CGCAACATAAAAAAA TCCCC ATT GGGGT AAGCGCTGTATACGG TERM 1510 1363424 - 1363414 - G 74 -8.2 -4.06863 | overlap 1363413 GCAACATAAAAAAAT CCCC ATT GGGG TAAGCGCTGTATACG TERM 1511 1363959 - 1363948 - g 71 -5.8 -4.40561 | opp_overlap 1363932 CGGCCTTAAAAAGAA CGCT TTAA AGCG CAAAATATCTAAAAG YPA_1213 1363820 - 1363984 + | hypothetical protein YPA_1214 1365000 - 1364125 - | AraC family transcriptional regulator TERM 1512 1365092 - 1365079 - R 82 -3.1 -5.46657 | TATTTTAATAAAAAA CTTAC CATA GCAAG CCACTTCGACTATAA YPA_1215 1365663 - 1365301 - | flagellar biosynthesis protein FliT fliS 1366072 - 1365674 - | flagellar protein FliS TERM 1513 1365972 - 1365958 - G 76 -12.8 -2.71144 | opp_overlap 1365948, overlap 1365946 TACGTGCGCGAATCA GGGCGC TTT GCGCCC CATCGAACAGCATCA fliD 1367483 - 1366083 - | flagellar capping protein YPA_1218 1367780 - 1368889 + | flagellin TERM 1514 1368918 - 1368933 + F 91 -8.2 -4.69027 | overlap 1368930 ATACCCTTATTCCAA CCCTGC TGCG GCGGGG TTTTTACCTCAGTTT TERM 1515 1369064 - 1369054 - f 81 -5.4 -5.10064 | GGGAACAGATAAAAA TCAG ACG CTGA GAATGCACTTCAAGG fliA 1369236 - 1369958 + | flagellar biosynthesis sigma factor TERM 1516 1370217 - 1370204 - g 95 -5.9 -5.47218 | opp_overlap 1370204 CTCCAGTTAAAAAAA CGGCC GCTG AGCCG TTATTTAAAAGATTA YPA_1220 1370180 - 1370689 + | protein FliZ YPA_1221 1370951 - 1371970 + | D-cysteine desulfhydrase YPA_1222 1372094 - 1372894 + | cystine transporter subunit TERM 1517 1372913 - 1372932 + G 100 -12.2 -5.06816 | opp_overlap 1372912 CAGAAAGTATGCAAT TGGTGCTG GATT CAGCACCA TTTTTATTGAAGGGT YPA_1223 1372894 - 1373556 + | putative amino-acid ABC transporter (permease) YPA_1224 1373559 - 1374320 + | putative amino-acid ABC transporter ATP-binding protein YecC TERM 1518 1374397 - 1374371 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1374380, overlap 1374372 1374387 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1519 1374398 - 1374372 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1374380, overlap 1374371 1374387 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1520 1374477 - 1374491 + T 100 -10 -4.72272 | opp_overlap 1374471 TGTCAATAACCTCAA CCACTG ATT CAGTGG TTTTTGGTGGCAAAA TERM 1521 1374573 - 1374597 + T 100 -12.2 -3.78312 | opp_overlap 1374571 GGCATTTTTAATATG TTGGGGGCCA CGGTA TGGTCCCCAA TTTGCTAGATAATTT YPA_1225 1374950 - 1374612 - | hypothetical protein YPA_1226 1375319 - 1374984 - | hypothetical protein YPA_1227 1376551 - 1375772 - | transposase/IS protein TERM 1522 1376470 - 1376484 + g 77 -11.4 -3.3506 | overlap 1376483 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1228 1377573 - 1376551 - | transposase for insertion sequence IS100 TERM 1523 1377595 - 1377577 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG putA 1381713 - 1377742 - | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 1524 1379487 - 1379464 - G 70 -9.6 -3.28745 | opp_overlap 1379484, overlap 1379467 GGCGTAATAATGCAA GAAGTCCACG GCTT CACGGACTTC GGCGATGGCATTACT TERM 1525 1381281 - 1381292 + g 78 -2.2 -5.26875 | gap 1, overlap 1381272 GTACCATGCCCGCGC G-GCC ATG GGCAC TTTTTTGATTACGCA YPA_1230 1382058 - 1382255 + | hypothetical protein TERM 1526 1383666 - 1383680 + G 76 -4.2 -4.91109 | overlap 1383668 TTCCAGGCTTCTTGT TTGCCA GTT TGGCTA TTTTTGTCGTCAGCC YPA_1231 1382285 - 1383769 + | proline permease TERM 1527 1383809 - 1383838 + F 73 -8.6 -3.59698 | opp_overlap 1383811 1383813, overlap 1383811 ATACGTTTAACTACA CATAGCCTCCTG CCATAA CAGGGGGCTATC TTGTATGTAAAATCA TERM 1528 1383836 - 1383811 - f 73 -9.7 -3.00476 | opp_overlap 1383809 1383811, overlap 1383813 ACGTTTAACTACACA TAGCCTCCTGC CATA ACAGGGGGCTA TCTTGTATGTAAAAT TERM 1529 1383811 - 1383836 + F 81 -11.2 -3.37466 | opp_overlap 1383811 1383813, overlap 1383809 ACGTTTAACTACACA TAGCCTCCTG CCATAA CAGGGGGCTA TCTTGTATGTAAAAT YPA_1232 1384102 - 1384950 + | hypothetical protein TERM 1530 1385470 - 1385448 - g 74 -8.4 -4.08485 | GTCAGCCAAACCAAA GCGTTCACCG ATG CAGTGAAGGC TGGGGATCTGGCACT YPA_1233 1384980 - 1386110 + | hypothetical protein TERM 1531 1386154 - 1386134 - g 100 -12.5 -4.63586 | overlap 1386135 1386146 ACATGAGAGACAAAA CCGGCCCGA AAT TCGGGCCGT ATCAACCGGATGATG TERM 1532 1386153 - 1386135 - g 100 -16 -3.37067 | overlap 1386134 1386146 CATGAGAGACAAAAC CGGCCCGA AAT TCGGGCCG TATCAACCGGATGAT TERM 1533 1386179 - 1386194 + G 74 -7.5 -4.20136 | overlap 1386177 ATGATGAGGCGGTGT CGCCG TCACGT CGGCG TTTAATTTTAGGGAT TERM 1534 1386939 - 1386924 - g 77 -9 -4.00042 | CTGGGTATCAAATAA TGCAGG CGAG CCTGCA TGGGCGGTAGGGGGA YPA_1234 1386121 - 1387170 + | hypothetical protein YPA_1235 1387187 - 1387426 + | hypothetical protein TERM 1535 1387433 - 1387455 + T 91 -7.7 -4.8667 | opp_overlap 1387433 1387431 1387429 GAAGCTTAAAATACA GCACCGC CATCATCGC GCGGTGC TTTTTATGACGTCTA YPA_1236 1388111 - 1387512 - | TrpR binding protein WrbA TERM 1536 1388189 - 1388144 - H 80 -9.9 -3.69684 | gap 1, opp_overlap 1388151 AAATTTATTGAATAA GGCTGAT-GATGTCATTAGTCG TCG CGGCTAATGACACCTATTAACC ATAAGCTAATCAGCA TERM 1537 1388151 - 1388181 + H 100 -13.4 -3.04263 | opp_overlap 1388144 TTGAATAAGGCTGAT GATGTCATTAGTCG TCG CGGCTAATGACACC TATTAACCATAAGCT YPA_1237 1388505 - 1389683 + | hypothetical protein TERM 1538 1389797 - 1389763 - T 100 -17.4 -3.59738 | opp_overlap 1389768, overlap 1389768 GATTAGAGGGGGAAA TAAAACGGTACCAGAA CAC CTCTGGCACCGTTTTA TCACACTGTGGTTAT TERM 1539 1389768 - 1389792 + T 93 -10 -4.39426 | opp_overlap 1389763 1389768 GAGGGGGAAATAAAA CGGTACCAGA ACACC TCTGGCACCG TTTTATCACACTGTG TERM 1540 1389792 - 1389768 - T 100 -12.9 -4.87803 | opp_overlap 1389768, overlap 1389763 GAGGGGGAAATAAAA CGGTACCAGAA CAC CTCTGGCACCG TTTTATCACACTGTG YPA_1238 1391224 - 1389809 - | D-alanine/D-serine/glycine permease TERM 1541 1389956 - 1389944 - G 76 -6.2 -4.73614 | CAGTACCAAAACAAA GGCG AAAAA CGCC ATACAAACCCATGAC TERM 1542 1389990 - 1389979 - G 70 -2.2 -5.00895 | opp_overlap 1389989 CCCATGACATAAAAA TACC GGCT GGCA TTTTGTAGATGGATT YPA_1239 1392348 - 1392899 + | attachment invasion locus protein TERM 1543 1392925 - 1392951 + F 85 -5.9 -5.18357 | gap 1 TCTATATAATAATAA CAGCCGTATTAG TTCA CTG-TGCGGCTG TTTTTTCATCAGTTG YPA_1240 1393239 - 1393493 + | hypothetical protein YPA_1241 1393865 - 1393521 - | hypothetical protein YPA_1242 1394214 - 1393990 - | hypothetical protein TERM 1544 1394617 - 1394627 + H 78 -4 -5.14477 | TTAACTTATCTAATG CTAA TAA TTAG TTTTTTGAATGTATG TERM 1545 1395075 - 1395088 + GH 71 -5.3 -4.57569 | opp_overlap 1395075 1395073, overlap 1395055 GGGTTGGAAGCAACA CGTAA AATT TTACG TTTTTCGCCGGATAC YPA_1243 1394877 - 1395533 + | response regulator uvrC 1395505 - 1397358 + | excinuclease ABC subunit C YPA_1245 1397417 - 1397965 + | phosphatidylglycerophosphate synthetase TERM 1546 1398152 - 1398136 - T 76 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 1547 1398367 - 1398347 - T 76 -10.5 -2.90714 | opp_overlap 1398346, overlap 1398350 TGAAATCGGTAGACA CAAGGGATT TAA AATCCCTCG GCTTATGGCTGTGCG TERM 1548 1398364 - 1398350 - T 73 -8.6 -3.5947 | opp_overlap 1398346, overlap 1398347 AATCGGTAGACACAA GGGATT TAA AATCCC TCGGCTTATGGCTGT TERM 1549 1398454 - 1398467 + T 100 -9.5 -5.69473 | CGAGTATGTCGTTAA CCGCC GAGA GGCGG TTTTTTTGTGATCTA YPA_1246 1399262 - 1398705 - | hypothetical protein YPA_1247 1399331 - 1399558 + | replicative DNA helicase TERM 1550 1400159 - 1400176 + T 75 -3.3 -5.12172 | ATGTACTGAGCCACC CGTCGGG AACG CCTTACG TTTTATTTATTGCTA YPA_1248 1401056 - 1400895 - | hypothetical protein YPA_1249 1401426 - 1401082 - | hypothetical protein YPA_1250 1402605 - 1401646 - | transposase YPA_1251 1403096 - 1402677 - | hypothetical protein TERM 1551 1402882 - 1402892 + g 76 -4.6 -5.0133 | TGCGCTATCTGCGCG GGGT AAA GCCC TTTTTTACGGCAGTA YPA_1252 1403347 - 1403207 - | putative major tail sheath protein TERM 1552 1403490 - 1403458 - R 71 -10 -2.62614 | overlap 1403451 1403456 1403457 GAAAACTATAAAACG GGTAACCACTTTAC GCGAT ATAGAGTGGTTACC ATTAACAGGAAAGTG YPA_1253 1404076 - 1403771 - | hypothetical protein YPA_1254 1405010 - 1404723 - | hypothetical protein YPA_1255 1405326 - 1405027 - | hypothetical protein YPA_1256 1405682 - 1405323 - | hypothetical protein TERM 1553 1405433 - 1405417 - G 85 -7.2 -4.8048 | overlap 1405421 GGCGCAGACCAAAAA CGCACC CGCCC GGCGCG CAGGGTTAACCAATT YPA_1257 1405713 - 1405985 + | hypothetical protein YPA_1258 1405966 - 1406256 + | hypothetical protein TERM 1554 1406376 - 1406346 - g 71 -11.2 -2.72511 | overlap 1406345 TGCATCCCCCCAAAG GTTCCCGGATACTT ACA AAGAATTCGGGAAC AATATAAGGAAAGTG YPA_1259 1406322 - 1407398 + | hypothetical protein YPA_1260 1407446 - 1408306 + | hypothetical protein TERM 1555 1408618 - 1408639 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTT GGTGACCGC CTGA GCGATCACC TTTAATACAGTGGCG YPA_1261 1408306 - 1408644 + | putative transposase TERM 1556 1408970 - 1408941 - T 86 -11.7 -3.31428 | gap 1, overlap 1408939 1408937 1408962 TTTAAATACAATAGA TAGCTCTGATTGAG TTA CT-AATCAGAGCTA CTGAGTACCTGTTTG YPA_1262 1409631 - 1409062 - | hypothetical protein YPA_1263 1410077 - 1409643 - | hypothetical protein YPA_1264 1410495 - 1410701 + | hypothetical protein YPA_1265 1411029 - 1410868 - | hypothetical protein YPA_1266 1411046 - 1411843 + | GntR family putative transcriptional regulatory protein YPA_1267 1412372 - 1412157 - | hypothetical protein TERM 1557 1412273 - 1412307 + g 95 -15.3 -3.88232 | gap 1, overlap 1412261 1412267 GAACCTTACGCACCG TGATGGTGCT-TTGAG TTTG CTCAAGAGCACCATCA TTGTTCTGTAAACGA YPA_1268 1412511 - 1413524 + | putative oxidoreductase YPA_1269 1413554 - 1414822 + | putative exported solute-binding protein TERM 1558 1414822 - 1414862 + F 72 -9.9 -2.77192 | gap 1, overlap 1414823 AGCGTTGTCCCGTTA ATCGCTTTCCGTCAGTGC AGTTGC GCACTGACGGAAA-TGAA ATTCTTACGCAGGTT TERM 1559 1414823 - 1414863 + F 70 -7.7 -3.6279 | gap 1, overlap 1414822 GCGTTGTCCCGTTAA TCGC-TTTCCGTCAGTGC AGTTGC GCACTGACGGAAATGAAA TTCTTACGCAGGTTT YPA_1270 1414889 - 1415749 + | putative binding-protein-dependent transport system, inner membrane component TERM 1560 1416361 - 1416378 + G 70 -8.5 -3.80174 | TGACACTGTTCTTTA TCTGGAA CGAA TTCCAGA TTGTTCTAACGCTCT YPA_1271 1415742 - 1416569 + | putative binding-protein-dependent transport system, inner membrane component YPA_1272 1416594 - 1417484 + | putative binding-protein-dependent transport system, ATP-binding component YPA_1273 1417370 - 1417711 + | ABC-type sugar transport systems, ATPase components YPA_1274 1417945 - 1417721 - | hypothetical protein TERM 1561 1418602 - 1418620 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1275 1418624 - 1419646 + | transposase for insertion sequence IS100 TERM 1562 1419727 - 1419713 - g 77 -11.4 -3.3506 | overlap 1419704 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1276 1419646 - 1420425 + | transposase/IS protein YPA_1277 1420582 - 1420469 - | hypothetical protein TERM 1563 1420555 - 1420571 + g 70 -4.4 -4.70169 | CATAAAGCATTTCAA GCTCAT TCCCT GTGAGC TTTTCTTCCATATGC TERM 1564 1420817 - 1420792 - R 100 -10.5 -4.34402 | TGGTGCATATTAAAA TGTGCGGAG CTATTCTC CTCCGCACA TACAGATTTAACGTC YPA_1278 1421034 - 1420825 - | hypothetical protein YPA_1279 1421605 - 1421024 - | hypothetical protein YPA_1280 1421775 - 1421611 - | hypothetical protein YPA_1281 1422075 - 1421794 - | hypothetical protein TERM 1565 1422057 - 1422090 + g 95 -15.5 -3.31322 | opp_overlap 1422048 1422064 1422078, overlap 1422064 1422067 GAGAAAGCTGGTGAG CCCTAAATAAGGGAT GCAA AACCCTTATTTAGGG TTGTCGGCCATTACA YPA_1282 1422673 - 1422119 - | hypothetical protein TERM 1566 1422338 - 1422351 + g 93 -3.8 -5.72616 | opp_overlap 1422338 ACGGGAAGGTGAAAT GGGA TGACTC TCCC TTTTTTTGTATAAAT TERM 1567 1422504 - 1422522 + g 76 -4.6 -4.96501 | ACATCTAATGCTGTG TTTTCAGG TAG TCTGGAAA TTTGTTTTTCTACGC YPA_1283 1423103 - 1422681 - | hypothetical protein TERM 1568 1423017 - 1423034 + g 83 -2.7 -5.44721 | TGACATATAATGAGT TATAAGC AATG GCTGATA TTTTTTTGACATAAT TERM 1569 1423887 - 1423907 + r 93 -11.2 -4.15565 | opp_overlap 1423887 ACTAGTGGTGTAAAA GGGATACC TTTTC GGTATCCC TTTTACAATAATCAG TERM 1570 1423907 - 1423887 - R 93 -11.2 -4.08945 | opp_overlap 1423887 ACTAGTGGTGTAAAA GGGATACC TTTTC GGTATCCC TTTTACAATAATCAG YPA_1284 1425940 - 1423919 - | pesticin/yersiniabactin receptor protein TERM 1571 1425739 - 1425758 + g 76 -12.8 -2.60244 | overlap 1425735 CTCTGGGGAGTTTGT CGCTGGCG GTGA CGCCGGCG TCGCTTAATTCCGGC TERM 1572 1426024 - 1426063 + r 90 -11.5 -3.72051 | overlap 1426025 1426028 1426028 ATTTCTAATAGTGGT GCTACCCGAAACGGGTT TATTTC AACCTGTTTCGGGTCGG TTTGCGCTTATTGGG TERM 1573 1426025 - 1426062 + r 100 -15 -2.82749 | overlap 1426024 1426028 1426028 TTTCTAATAGTGGTG CTACCCGAAACGGGTT TATTTC AACCTGTTTCGGGTCG GTTTGCGCTTATTGG TERM 1574 1426028 - 1426038 + r 87 -8.2 -4.43208 | overlap 1426025 1426024 1426028 CTAATAGTGGTGCTA CCCG AAA CGGG TTTATTTCAACCTGT TERM 1575 1426028 - 1426059 + r 100 -15.3 -2.66593 | overlap 1426028 1426025 1426024 CTAATAGTGGTGCTA CCCGAAACGGGTT TATTTC AACCTGTTTCGGG TCGGTTTGCGCTTAT TERM 1576 1426093 - 1426118 + r 91 -6.7 -5.46276 | opp_overlap 1426093, overlap 1426095 GCAGAATGGCGATAA CGGTCGACGGC GAGA GCCGTCAGGCG TTTTTTGTCTATCTT TERM 1577 1426095 - 1426117 + r 72 -7.7 -3.85325 | gap 1, opp_overlap 1426093, overlap 1426093 AGAATGGCGATAACG GTC-GACGGC GAGA GCCGTCAGGC GTTTTTTGTCTATCT YPA_1285 1427648 - 1426071 - | yersiniabactin siderophore biosynthetic protein TERM 1578 1426713 - 1426703 - G 71 -6.8 -4.2349 | overlap 1426680 CCGCCATACCGAAAA CCTG TTG CAGG GTACAGTCAAAGGTG TERM 1579 1426788 - 1426806 + g 71 -10.3 -3.04461 | opp_overlap 1426784, overlap 1426790 TGCCTGAATGACGCG CAGCGAC GAAAG GTCGCTG TCTTCCCACTCCCTG YPA_1286 1428440 - 1427652 - | yersiniabactin biosynthetic protein YbtT YPA_1287 1429552 - 1428452 - | yersiniabactin biosynthetic protein YbtU TERM 1580 1429054 - 1429044 - G 71 -5.4 -4.48713 | GCCAGCAACAACAAA TCCA GAG TGGA GTAGAGCAACTGTCG YPA_1288 1439040 - 1429549 - | yersiniabactin biosynthetic protein TERM 1581 1429832 - 1429852 + g 71 -7.5 -4.07885 | overlap 1429833 TTGTCGAGCCACGTT TCTGCCGCT TGC AGCGTCAGG TTTTGCGACACCATA TERM 1582 1433011 - 1433025 + g 79 -11.4 -3.61398 | ATGCCGCCGTTTTTC CAGCGC GAT GCGCTG TTCTTCCGGGGAAAG TERM 1583 1433642 - 1433652 + g 70 -2.4 -4.9725 | overlap 1433643 GCAGGAGGAATGACC GGCG TTG CGGC TTTTTCTGTGGCGCT TERM 1584 1433805 - 1433825 + g 79 -11.1 -3.55444 | overlap 1433806 ACGCGCCCATACCTC GGCTGGCGA GCG TCGCCAGCA TTTCCGGCGTGGCCG TERM 1585 1433806 - 1433824 + g 82 -14.6 -2.73124 | overlap 1433805 CGCGCCCATACCTCG GCTGGCGA GCG TCGCCAGC ATTTCCGGCGTGGCC TERM 1586 1434082 - 1434039 - G 80 -13.2 -3.02144 | gap 1 GCAGGGTTTGCAACA GCTGGCTTGCCGCCTGCGC TTTTACC GCGAAAACGGCA-GCCAGC TGGTGGTCATCAAGC TERM 1587 1434233 - 1434216 - G 70 -11.3 -2.67747 | overlap 1434215 CGCCCACATCACAAC GGCAGAC GCGC GTCTGCC CGCCCTCCACGTCGC TERM 1588 1434270 - 1434300 + g 73 -3.2 -4.96848 | gap 1, overlap 1434272 1434282 ATGACTCATCCACGC GCGGCGCCA-GCA GGGCGA TGCGTCGCGCCCC TTTTTCTCTGAGCCA TERM 1589 1436619 - 1436607 - G 74 -4.7 -4.84359 | CCATCTCCAGAAAAA CGCGG GCG CCGAG CTGATGCGCCACCTG TERM 1590 1437444 - 1437470 + g 86 -13.6 -3.64682 | CCCCCGATTTCTCAC CGGCCCAGGCGC TGA GCGCCTCGGCGG TTTCACGGTTTAATG TERM 1591 1437600 - 1437641 + g 85 -7.9 -4.84761 | gap 1, opp_overlap 1437585 1437584, overlap 1437603 1437604 CCGTCGCCAGCCGCC GCAACGCGCTGTCGCT-GGC GGC GCTGAGCAGCAGCGCGGTAC TTTTTCTGCCGCTAT TERM 1592 1437604 - 1437637 + g 73 -11.7 -2.58667 | gap 1, opp_overlap 1437585 1437584, overlap 1437603 1437600 CGCCAGCCGCCGCAA CGCGCTGTCGCT-GGC GGC GCTGAGCAGCAGCGCG GTACTTTTTCTGCCG TERM 1593 1438116 - 1438156 + g 78 -12.5 -2.93073 | overlap 1438124 1438128 TGACTGCCTGTTGCC CTGCGACGGAAGGGGCGGT ATA GCCGACCTTTCTGTTGCCG TCGTTGTTGACCGCG TERM 1594 1439105 - 1439075 - R 78 -10.5 -3.33711 | gap 1, overlap 1439070 GATTCACAAAGTCAA TGGAACGCCAT-GC GTTC GCGATGGCGTTCCG GGGAAAATCAGTTTG YPA_1289 1445235 - 1439128 - | yersiniabactin biosynthetic protein TERM 1595 1439428 - 1439470 + g 75 -10.5 -3.34398 | gap 1, overlap 1439426 GTGTGGCTGAGAGTG CTCAGGGCATACGCGCGGTG AGCG CTCTGCGCAT-TGCCCTGCG TGTTTAACGGGAGGC TERM 1596 1439499 - 1439516 + g 70 -8.3 -3.78775 | GCACCAGCGCGGCGA GCGGCAG TTGC CAGCCGC TTTCATCCTCGGCCA TERM 1597 1440057 - 1440024 - G 74 -9.5 -3.60525 | overlap 1440045 1440048 TCCATGCAGAGAGAA CCGTTGACCACACCG ACAA CAGTACGGCCGACGG GGTGAGATGGGCGTC TERM 1598 1440065 - 1440081 + g 87 -7.2 -5.0133 | opp_overlap 1440048 1440045, overlap 1440066 GCCGACGGGGTGAGA TGGGCG TCAGC CGCCCG TTTTTTCAGCCGATG TERM 1599 1440974 - 1441002 + g 76 -6 -4.70659 | gap 1, opp_overlap 1440976 1440978, overlap 1440977 1440978 ACATTGCCAGTTGAT AAGAGTTGCTGCC AGAG GGCGGCAAC-CTG TTTTTCAATGTCGCC TERM 1600 1440977 - 1441000 + g 77 -8.8 -3.96999 | opp_overlap 1440976 1440978, overlap 1440974 1440978 TTGCCAGTTGATAAG AGTTGCTGCC AGAG GGCGGCAACC TGTTTTTCAATGTCG TERM 1601 1440978 - 1440999 + g 76 -12.3 -2.97476 | opp_overlap 1440976 1440978, overlap 1440977 1440974 TGCCAGTTGATAAGA GTTGCTGCC AGAG GGCGGCAAC CTGTTTTTCAATGTC TERM 1602 1440999 - 1440978 - G 70 -10.1 -3.23393 | opp_overlap 1440978 1440977 1440974, overlap 1440976 TGCCAGTTGATAAGA GTTGCTGCC AGAG GGCGGCAAC CTGTTTTTCAATGTC TERM 1603 1442532 - 1442550 + g 71 -10.2 -3.14132 | CACCCGGCACCCAGT CAGGGCAG TCC CGGCCCTG TTCATCCACCACCCG TERM 1604 1443320 - 1443300 - G 70 -8.2 -3.6682 | overlap 1443312 GCTGATCCAGCGAAA CCGGAACG TAAAC CGCCCCGG CCAGCAGGACGGCCA TERM 1605 1443332 - 1443312 - G 70 -8.2 -3.77241 | overlap 1443300 AAACCGGAACGTAAA CCGCCCCG GCCAG CAGGACGG CCAGAACCGCAACAA TERM 1606 1445311 - 1445342 + r 100 -15.2 -3.14132 | opp_overlap 1445302, overlap 1445311 1445318 AACAATTGGATGCTA CCCGAAACGGGTTT ATTT ATGCCCGTTTCGGG TTGGTAACAGGCGGA TERM 1607 1445311 - 1445321 + r 87 -8.2 -4.55697 | opp_overlap 1445302, overlap 1445311 1445318 AACAATTGGATGCTA CCCG AAA CGGG TTTATTTATGCCCGT TERM 1608 1445393 - 1445363 - R 100 -21.3 -3.93658 | opp_overlap 1445367 AACAGGCGGAAAGAA CAGAGGCCCGGAT GGGGT ATCCGGGCCTCTG TCAGGGAGGAGTTTA TERM 1609 1445367 - 1445389 + r 100 -15.6 -2.87132 | opp_overlap 1445363 GGCGGAAAGAACAGA GGCCCGGATG GGG TATCCGGGCC TCTGTCAGGGAGGAG YPA_1290 1446385 - 1445426 - | transcriptional regulator YbtA TERM 1610 1446677 - 1446687 + G 74 -4.6 -4.85599 | GGCATTAACCAGCCT GGGG GCG CTCC TTTTTCTGGCGTGGA YPA_1291 1446642 - 1448354 + | lipoprotein inner membrane ABC-transporter TERM 1611 1448416 - 1448451 + GF 100 -13.4 -3.14881 | gap 1 TCCAGCGTTGGCAGT CAG-GCCAGGATGCTGC GAC GCAGTATGCTGGCGCTG TTGCTGGCGGCATTC TERM 1612 1448959 - 1448927 - gf 75 -8.5 -3.86346 | gap 1, overlap 1448928 1448931 CGATGCGGCGACAAA TGCAGACGCTGGGG GAAGCG CACCAGCGTCTG-A GCGGCGATATCGTTG TERM 1613 1448959 - 1448928 - gf 73 -10.1 -2.91593 | overlap 1448927 1448931 GATGCGGCGACAAAT GCAGACGCTGGGG GAAGCG CACCAGCGTCTGA GCGGCGATATCGTTG TERM 1614 1448956 - 1448931 - gf 74 -10.4 -2.70354 | overlap 1448927 1448928 GCGGCGACAAATGCA GACGCTGGGG GAAGCG CACCAGCGTC TGAGCGGCGATATCG YPA_1292 1448341 - 1450143 + | inner membrane ABC-transporter YbtQ TERM 1615 1450527 - 1450553 + GF 71 -8.8 -3.25823 | gap 1 TATTTGTTCTGTTTA TGGTGGCAGGC ACGGTC GCCT-CCACCA TTGATATCGCCAGCG YPA_1293 1450028 - 1451416 + | putative signal transducer YPA_1294 1451444 - 1452748 + | salicylate synthase Irp9 TERM 1616 1452883 - 1452911 + T 74 -10.3 -2.72829 | opp_overlap 1452888, overlap 1452882 1452888 TGATAAAAGTCTATA TAGAACCACCTCC TGT GGAGGTGGTGGTA ATTTGCCAGAGTGTG TERM 1617 1452906 - 1452888 - T 100 -14.6 -3.60814 | opp_overlap 1452883 1452882 1452888 AAAGTCTATATAGAA CCACCTCC TGT GGAGGTGG TGGTAATTTGCCAGA TERM 1618 1452888 - 1452909 + T 73 -10.1 -2.90813 | opp_overlap 1452888, overlap 1452883 1452882 AAAGTCTATATAGAA CCACCTCCT GTGG AGGTGGTGG TAATTTGCCAGAGTG YPA_1295 1454204 - 1452942 - | integrase TERM 1619 1453357 - 1453369 + g 71 -5.5 -4.56597 | opp_overlap 1453357, overlap 1453352 GAGAGGGGGACGATA TGCGG CAT TCGCA TTTTTGCCCCGCGGC YPA_1296 1455484 - 1454744 - | pili assembly chaperone TERM 1620 1454991 - 1455005 + g 76 -5.8 -4.65895 | opp_overlap 1454990 1454993 TTCGCGATTATAACG TATTGA TTA TCAATA TTTTTAAGTGAAAAC YPA_1297 1456830 - 1455481 - | hypothetical protein YPA_1298 1459437 - 1456846 - | fimbrial usher protein TERM 1621 1457100 - 1457111 + g 73 -5.8 -4.52781 | CCATAGGCAATTGGC TGCC ATCG GGCA TTTTAATTGTGATTA TERM 1622 1458714 - 1458688 - G 70 -2.9 -4.87273 | AAGACTGGAGAAAAA CTGGCCGGAAC TGAAG GTTTCACCCAG CGTAATTTCACTGCC YPA_1299 1460127 - 1459486 - | pili assembly chaperone YPA_1300 1460750 - 1460220 - | fimbrial protein TERM 1623 1461101 - 1461085 - R 100 -5.8 -6.23209 | opp_overlap 1461085 TGAATCAAAAAAAAA CGCCAA GAAGA CTGGCG CTTTTAATAGGGGAA YPA_1301 1461238 - 1461131 - | two-component sensor protein YPA_1302 1465114 - 1461263 - | signal transduction histidine kinase TERM 1624 1464090 - 1464075 - GR 73 -3.2 -4.99638 | AGATCGACAGAAAAA CCGG CCATTTCT CCGG TCCGGCGGTCACGGA TERM 1625 1465031 - 1465007 - GR 81 -12.2 -2.52491 | overlap 1465006 TAGAGACGCATGAAG CTGCCCGCTA ATCAG TAGCAGGCAG TAGAGTACGGTACGT YPA_1303 1465721 - 1465089 - | putative two-component response regulator TERM 1626 1465365 - 1465387 + gr 70 -7.8 -3.71265 | opp_overlap 1465365 AGAGTAACCACGTAA TACGTTTTGC GCC GCAAAAAGTA TTTCACTAATATCTT YPA_1304 1467869 - 1466547 - | putative 4-hydroxybutyrate coenzyme A transferase YPA_1305 1468419 - 1467892 - | putative transcription regulatory protein TERM 1627 1468521 - 1468497 - R 100 -13.6 -3.01416 | gap 1, overlap 1468487 TATCAGGCAGAGATA CCCGCTCGGGT AAGT ACCCG-GCGGG CCTGACGTGCAACAG YPA_1306 1469326 - 1468484 - | putative citrate lyase beta chain TERM 1628 1469361 - 1469395 + H 78 -9.4 -3.61541 | overlap 1469359 CGCTTAGTCTATGGT CGCCGTTATCATTTAT CCA ATATATGATACCGGTG TGTTTAATTGCTTTT TERM 1629 1470242 - 1470264 + G 100 -16.3 -3.03635 | GCTCGCGTTGGCGTA CCGGCGAGG GGATA CCTCGCCGG TATTAAGAAACTTTG YPA_1307 1469415 - 1470299 + | LysR family transcriptional regulator TERM 1630 1470370 - 1470358 - T 71 -3.3 -5.03145 | overlap 1470359 CAATCGGTTAAAAAA CGCCC CAA GAGCA AAATTATTGGCTATC YPA_1308 1470847 - 1470374 - | putative lipoprotein TERM 1631 1470623 - 1470601 - G 74 -2 -5.10208 | overlap 1470603 CAATGGGAATAAAAA CATTCCAC TCGCCTT GCGGAATA AACGAGAAATGTCCC YPA_1309 1471432 - 1470872 - | hypothetical protein YPA_1310 1472419 - 1471652 - | putative sugar transporter TERM 1632 1472379 - 1472338 - G 71 -5.7 -4.33274 | opp_overlap 1472365, overlap 1472366 TGTAGAGTACTAAAA GGGCGGGAAGCACACCAAT CCAG AATAATGCGCGCCACGCCC ACTCCTCTGATAGTA YPA_1311 1472957 - 1472514 - | putative IS100 transposase YPA_1312 1473292 - 1472996 - | hypothetical protein TERM 1633 1473211 - 1473225 + g 77 -11.4 -3.3506 | overlap 1473224 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1313 1474314 - 1473292 - | transposase for insertion sequence IS100 TERM 1634 1474336 - 1474318 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_1314 1474839 - 1474396 - | putative MFS aromatic acid symporter TERM 1635 1474867 - 1474893 + r 73 -2.5 -5.16681 | gap 2, overlap 1474872 TACAGACTGGCTTTT TAACTCTTGTGAG CAC CTCACA--AGTTA TTTTGTTATTTTTAA TERM 1636 1474872 - 1474890 + r 100 -11.8 -4.59946 | overlap 1474867 ACTGGCTTTTTAACT CTTGTGAG CAC CTCACAAG TTATTTTGTTATTTT YPA_1315 1475774 - 1474905 - | putative dicarboxylic acid hydrolase TERM 1637 1476427 - 1476409 - g 75 -10.3 -3.4582 | opp_overlap 1476409, overlap 1476407 CGACGTTAGCAAATA CTGTCGG TACCG CCGACAG TGCGTTACGGCAGGC TERM 1638 1476409 - 1476427 + G 70 -11 -2.52464 | opp_overlap 1476409 1476407 CGACGTTAGCAAATA CTGTCGGT ACC GCCGACAG TGCGTTACGGCAGGC YPA_1316 1475886 - 1476848 + | LysR family transcriptional regulator YPA_1317 1477752 - 1477153 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 1639 1477381 - 1477371 - G 79 -5.4 -4.98255 | GCTGAACCATAAAAA TGGT TGC ACCA AATATTGCACAGTGG YPA_1318 1478104 - 1479264 + | putative aminotransferase YPA_1319 1480989 - 1479460 - | L-asparagine permease TERM 1640 1480780 - 1480768 - G 73 -2.7 -4.93365 | CCGGAGAATGAAAAA TGAAA AAA TTCCA CAAACCAGATAAACC TERM 1641 1481396 - 1481430 + r 73 -3.7 -4.96845 | TTATATTGCATTTTA TCTTATTTCATATGT ATCTA ACCCATGGAATAAGA TTTATTTATTTTTAT YPA_1320 1482481 - 1481711 - | DeoR family transcriptional regulator TERM 1642 1482131 - 1482098 - G 70 -4.7 -4.7373 | GGATTCGATCAAAAA GTTAGCAATAACAAA GTCG TTGGTTACCACTAAC AGATCATCTCTGTCC YPA_1321 1483034 - 1483240 + | hydroxypyruvate isomerase YPA_1322 1483692 - 1484699 + | glutaminase TERM 1643 1485643 - 1485630 - g 79 -8.1 -4.30416 | AGGAGCAAGGTAAAA CGCCA TTAC TGGCG CTAGACGTGATTACA TERM 1644 1486323 - 1486310 - g 72 -8.1 -3.81146 | CGGGTGAATGAAGAA GCACG GTTA CGTGC GCTGAAATTCGGTTT YPA_1323 1484810 - 1486450 + | hypothetical protein TERM 1645 1486459 - 1486439 - f 84 -5.4 -5.25803 | overlap 1486427 1486440 AATCTGGATAAAAAA GCCAGCAA GTAAG TTGCTGGA GGTTATTGACAAAGT TERM 1646 1486458 - 1486440 - f 78 -8.9 -3.74397 | overlap 1486427 1486439 ATCTGGATAAAAAAG CCAGCAA GTAAG TTGCTGG AGGTTATTGACAAAG TERM 1647 1486534 - 1486560 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 1486523, overlap 1486529 1486535 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1648 1486535 - 1486561 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 1486523, overlap 1486529 1486534 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1649 1486640 - 1486650 + F 70 -2.6 -5.07567 | GCAAGTAAGTTGCTG TTAA AAT TTAA TTTTTTGAAATATAA TERM 1650 1486685 - 1486717 + F 100 -15 -5.72622 | gap 1, opp_overlap 1486681 1486685 1486704 TTGAAATAAAAGTGA CTGGCAGTGTGTTGC GAAA GCAGC-CACTGCCAG TTTTTTCTTTCTGGC TERM 1651 1486717 - 1486685 - f 91 -12.8 -2.88887 | gap 1, opp_overlap 1486685, overlap 1486681 1486704 TTGAAATAAAAGTGA CTGGCAGTGTGTTGC GAAA GCAGC-CACTGCCAG TTTTTTCTTTCTGGC TERM 1652 1486898 - 1486913 + F 71 -3.2 -5.00884 | opp_overlap 1486898 ATTGGTGGGGTAAAT TGCGCA TCAG TACGCA TTTTTTGAAAAAAAT TERM 1653 1487287 - 1487272 - g 76 -4.6 -5.00616 | TCTCCGCGCAAAAAA GCTTCC AGAT GGAGGC GGCCTTTGGCGAAAT TERM 1654 1487364 - 1487353 - g 70 -3 -4.77567 | ATGTCGATAATAAAA TCAA TTGG TTGA AAGGCGAACTAACGG TERM 1655 1487936 - 1487917 - g 74 -7.8 -4.26461 | AGCAAGGGAAAATAA CACCGGCA ATGA TGGCGGTG CAGGATGCCTACTTT YPA_1324 1487031 - 1488950 + | hypothetical protein YPA_1325 1489154 - 1489681 + | hypothetical protein TERM 1656 1490353 - 1490368 + G 73 -9 -3.69333 | ATTGCTCAATCTGGC TGCCAC CGTG GTGGCA TTTGGCTGGGTTATA YPA_1326 1489982 - 1491391 + | hypothetical protein YPA_1327 1491394 - 1492686 + | hypothetical protein TERM 1657 1493423 - 1493441 + G 70 -8.8 -3.62046 | opp_overlap 1493420 1493423, overlap 1493424 CCAATTCGCAAAGTA TCTGCCTC TGA GGGGCAGG TTCTTGACAAGATAA TERM 1658 1493580 - 1493570 - g 76 -6.8 -4.56597 | overlap 1493571 TTTGCGTTGCAAAAA GCAC TGG GTGC CAGTGGGCGTGACAT TERM 1659 1493585 - 1493571 - g 70 -10 -3.33744 | overlap 1493570 TTGCGTTGCAAAAAG CACTGG GTG CCAGTG GGCGTGACATTATCC TERM 1660 1493763 - 1493780 + G 70 -9.1 -3.61398 | TGCTTTCGTTGTTTG TTGCCGC TGTG GCGGCGA TTGTTCCCACCCGAC YPA_1328 1492676 - 1493839 + | hypothetical protein YPA_1329 1493843 - 1494556 + | ABC transporter, ATP-binding protein YPA_1330 1494513 - 1495043 + | putative thioredoxin YPA_1331 1495040 - 1495354 + | putative cytochrome TERM 1661 1496182 - 1496155 - g 76 -8.6 -4.1523 | TGCAACCAGAAAGAA TCCCACATATTA TCAG TAATATGCAGGA GTGTACTTTACCCGG YPA_1332 1495527 - 1496414 + | tellurite resistance protein TehB TERM 1662 1496909 - 1496885 - g 80 -2.8 -5.32882 | gap 1, overlap 1496886 1496887 CATCATTATAAAAAA CGTGATCGGCC TATT GGCCCACCA-G TGGAAGCGGTCTTTA YPA_1333 1496555 - 1497772 + | putative peptidase TERM 1663 1500477 - 1500491 + G 85 -7.8 -4.84359 | opp_overlap 1500459 1500476 TGATGCTGAACTTAG CGTGAC GCC GTCGCG TTTTTCTGACGGTAA YPA_1334 1498441 - 1500909 + | outer membrane protein PgaA TERM 1664 1501576 - 1501564 - g 76 -3.4 -5.09259 | GATCCCAAAACAAAA CAGT ATGAA ACTG TTGAAGCCTTTAAGC YPA_1335 1500922 - 1502943 + | haemin storage system, HmsF protein YPA_1336 1502933 - 1504267 + | N-glycosyltransferase PgaC TERM 1665 1504414 - 1504439 + G 77 -10.5 -3.54459 | CATATGGGGCCGATA CCGTTGAGGAT TTAT ATTCTCAGCGG TTTGACGACGATTGC YPA_1337 1504264 - 1504731 + | haemin storage system, HmsS protein YPA_1338 1505253 - 1505963 + | putative acetyltransferase TERM 1666 1506447 - 1506437 - g 78 -4 -5.07652 | GCTGTTAAAACAAAA TCAA AGA TTGA CTCAAGCGACTCGTT YPA_1339 1506402 - 1506680 + | hypothetical protein YPA_1340 1506740 - 1507528 + | hypothetical protein TERM 1667 1507611 - 1507587 - T 100 -14.3 -5.48787 | opp_overlap 1507587 AGAATACACAAAAAA GGGCAAGCGTT AAC AGCGCTTGCCC TTTGCTATTCAGACG TERM 1668 1507587 - 1507611 + T 100 -16.5 -3.92324 | opp_overlap 1507587 AGAATACACAAAAAA GGGCAAGCGTT AAC AGCGCTTGCCC TTTGCTATTCAGACG YPA_1341 1508731 - 1507631 - | calcium/sodium:proton antiporter TERM 1669 1508782 - 1508768 - R 75 -8.5 -3.74693 | CTTTACTGTATTAAA CGGGC ATTAG GCCCG GTTAACGATAAATAA YPA_1342 1511061 - 1509280 - | nitrate/nitrite sensor protein NarX TERM 1670 1512578 - 1512540 - g 71 -5.3 -4.57837 | opp_overlap 1512549 1512551, overlap 1512548 1512549 1512551 ACACTTCCCCAAAAA CATCAAAATCAGCCACC CCGCT GGCGGCTATTTCTTATG GTTAGAATTGGAGCC YPA_1343 1511371 - 1512792 + | GntR family regulatory protein YPA_1344 1513429 - 1514673 + | bifunctional succinylornithine transaminase/acetylornithine transaminase TERM 1671 1514674 - 1514662 - f 74 -6.3 -4.57073 | opp_overlap 1514662 1514661, overlap 1514664 CAGGTTTGTCAAAAA GTTAC GTC GTAAC GTTTATGCCGTAGGC YPA_1345 1514703 - 1515755 + | arginine succinyltransferase TERM 1672 1515926 - 1515939 + G 80 -9.5 -4.09685 | ACTCTGGCCTGCCAT GCCGC AAGA GCGGC TTTTCCGGCATGGGC TERM 1673 1516165 - 1516155 - g 70 -8.2 -3.70902 | CCGGCCATAGCCAAA CCCC AAT GGGG GACAGCATGTCAGTG YPA_1346 1515752 - 1517269 + | succinylglutamic semialdehyde dehydrogenase TERM 1674 1517403 - 1517427 + G 83 -12.9 -3.63515 | opp_overlap 1517391 AAATCGTACTTCCAA CCCTCGTTTGG CAG CCAAACAAGGG TTATTGAAGATGAAA TERM 1675 1517481 - 1517470 - g 71 -7.2 -4.07877 | TTAGGCTACAAACAA GGGG TTCT CCCC CCTCAGGAGCGGCCG YPA_1347 1517293 - 1518636 + | succinylarginine dihydrolase YPA_1348 1518697 - 1519689 + | succinylglutamate desuccinylase YPA_1349 1520418 - 1521365 + | hypothetical protein TERM 1676 1521357 - 1521375 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1350 1521379 - 1522401 + | transposase for insertion sequence IS100 TERM 1677 1522482 - 1522468 - g 77 -11.4 -3.3506 | overlap 1522459 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1351 1522401 - 1523180 + | transposase/IS protein YPA_1352 1523308 - 1523460 + | outer membrane protein C2, porin TERM 1678 1523435 - 1523453 + T 71 -4.6 -4.58395 | CGGATGATGTTGTTG CGGTAA ACTTGAC TTACCG TTTTTAAGCAGTAGA TERM 1679 1523589 - 1523557 - T 70 -5.6 -4.3207 | gap 1, opp_overlap 1523565, overlap 1523559 1523565 ATAGAAAGATAGAAA GATAGAAAGGCGGGG GAAA CCCCGTCTTTTTA-C TGTGAGCTGTAAACC TERM 1680 1523588 - 1523559 - T 81 -9.3 -3.74227 | opp_overlap 1523565, overlap 1523557 1523565 AGAAAGATAGAAAGA TAGAAAGGCGGGG GAAA CCCCGTCTTTTTA CTGTGAGCTGTAAAC TERM 1681 1523565 - 1523582 + T 100 -10.5 -4.80882 | opp_overlap 1523565 1523559 1523557 ATAGAAAGATAGAAA GGCGGGG GAAA CCCCGTC TTTTTACTGTGAGCT TERM 1682 1523582 - 1523565 - T 82 -8.3 -4.3207 | opp_overlap 1523565, overlap 1523559 1523557 ATAGAAAGATAGAAA GGCGGGG GAAA CCCCGTC TTTTTACTGTGAGCT YPA_1353 1524531 - 1523725 - | putative N-formylglutamate amidohydrolase YPA_1354 1525748 - 1524528 - | imidazolonepropionase TERM 1683 1525903 - 1525881 - R 70 -7.1 -3.9009 | AACCTAGCCTATAAA TTCACTATC AGCAA GATAGCGAA TTCACAATTGCGTAA YPA_1355 1526719 - 1525952 - | GntR family transcriptional regulator YPA_1356 1526867 - 1528237 + | N-formimino-L-glutamate deiminase YPA_1357 1528237 - 1528809 + | hypothetical protein YPA_1358 1530591 - 1528987 - | hypothetical protein TERM 1684 1529086 - 1529114 + g 76 -5.3 -4.89477 | GTCTGCTTGATGGGT GATTTCGGTTCCG GCT CGTAATCCAAATC TTTTATTCTTACGGG TERM 1685 1530804 - 1530769 - H 70 -7.7 -3.70773 | gap 1 CGCTACATGTAACAA CGGCCAACGGGATAAA TGATT TTTATCCCA-TGGCTG AGGCCTCACCATTTC YPA_1359 1531600 - 1532109 + | hypothetical protein YPA_1360 1532078 - 1532608 + | 3-oxoacyl-(acyl-carrier-protein) synthase III YPA_1361 1532622 - 1533638 + | putative dehydrogenase YPA_1362 1533631 - 1534437 + | hypothetical protein YPA_1363 1534434 - 1535720 + | putative coenzyme synthetase TERM 1686 1535894 - 1535913 + F 78 -9.2 -3.727 | CATCGGGGTTTATTG GCGGGGCA TTTA TGCGCCGC TTTGCCTGTCATGAC YPA_1364 1535905 - 1536816 + | putative dehydrogenase YPA_1365 1536816 - 1537970 + | putative glycosyl transferase TERM 1687 1538499 - 1538511 + G 73 -5.5 -4.63486 | ACCCAGCATTACTGA CGCTT TGT GAGCG TTTTATTGCGGCAGT YPA_1366 1537967 - 1538551 + | hypothetical protein YPA_1367 1538548 - 1539735 + | putative glycosyl transferase YPA_1368 1540360 - 1539896 - | hypothetical protein TERM 1688 1540493 - 1540471 - R 77 -6.3 -4.65933 | CATCTTTAAAAGAAA GCAGACAAC ATTTA ATTGCCTGC TCCTCAATATTGCCA YPA_1369 1542188 - 1540530 - | hypothetical protein TERM 1689 1542247 - 1542231 - H 78 -2.3 -5.49809 | TAAAGTTGAAAAAAA GTTTAGA GAC TGTAAAC AATATTGTGTAATTG TERM 1690 1543489 - 1543510 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_1370 1542307 - 1543515 + | transposase for the IS285 insertion element YPA_1371 1545797 - 1543635 - | hypothetical protein YPA_1372 1546375 - 1548486 + | hypothetical protein YPA_1373 1548733 - 1549371 + | hypothetical protein YPA_1374 1550165 - 1549506 - | hypothetical protein YPA_1375 1550950 - 1550270 - | putative dehydrogenase TERM 1691 1551014 - 1550985 - R 87 -8.5 -4.57353 | gap 1, opp_overlap 1550985 GGCTATTAGATAAAA GCCGGGTGTGA-GA AGA CCGCCACTCCCGGC TTGAGTCACTAAGTT TERM 1692 1551297 - 1551279 - R 70 -9.6 -2.78695 | opp_overlap 1551278 1551277, overlap 1551278 TTGAGATAAAGTAAT CCGCTAAC TAT ATTAGCGG GGTTTTGGACTCATG YPA_1376 1552240 - 1551404 - | hypothetical protein YPA_1377 1553159 - 1552227 - | hypothetical protein TERM 1693 1552396 - 1552412 + g 84 -2.2 -5.59357 | overlap 1552388 GCTTTATGATTGTGT GCGATC TTTTC GATAGC TTTTTTTGATCTCAT YPA_1378 1554070 - 1553165 - | hypothetical protein TERM 1694 1554740 - 1554771 + r 84 -10.9 -3.63515 | opp_overlap 1554739 1554738 GGCAACGAAGTAAGT CCCCAGGCGCTTA CATAAA TAAGTACCTGGGG TTGTTGAGCGTAGCC TERM 1695 1554826 - 1554853 + r 85 -4 -5.5112 | opp_overlap 1554823 1554826, overlap 1554827 ACGAGTATATAAGCA GTAGTGGAGCCG TCAA CGACCCCACTAA TTTTTTATTACTGAA TERM 1696 1554827 - 1554852 + r 70 -7.5 -3.89587 | opp_overlap 1554826 1554823, overlap 1554826 CGAGTATATAAGCAG TAGTGGAGCCG TCAA CGACCCCACTA ATTTTTTATTACTGA YPA_1379 1555934 - 1554861 - | hypothetical protein TERM 1697 1555329 - 1555319 - G 70 -3.2 -4.87133 | AGTGTGTAAACAAAA TAGC CGG GCCA GATTTATCCACTACG YPA_1380 1556617 - 1556147 - | hypothetical protein YPA_1381 1557094 - 1556672 - | putative decarboxylase TERM 1698 1557273 - 1557249 - R 82 -8.6 -4.30104 | opp_overlap 1557254, overlap 1557246 1557252 TAAAGCAAGAAAGAA GAAGAGGAGG GAGAT CCTCCTCTTA AACCTGTATGCAAAA TERM 1699 1557270 - 1557252 - R 91 -10.3 -4.22676 | opp_overlap 1557254, overlap 1557246 1557249 AGCAAGAAAGAAGAA GAGGAGG GAGAT CCTCCTC TTAAACCTGTATGCA YPA_1382 1558756 - 1557371 - | putative two-component system sensor protein TERM 1700 1558073 - 1558096 + g 70 -4.4 -4.67904 | overlap 1558075 TTCCTGCCGTTCGAG CACGCCGTTG AATG CGACGGCCAG TTTTTGCAGTTCATC YPA_1383 1559460 - 1558768 - | transcriptional activator TERM 1701 1558861 - 1558872 + g 76 -7.2 -4.3739 | GGGCGTATCTATTTT CGCC CGCA GGCG TTTTATCGCCACCTC TERM 1702 1559542 - 1559571 + H 93 -8.7 -4.46112 | overlap 1559544 1559545 1559553 1559565 CCAACACCAGGCTGA CATTTTCCTGACA TTTT TGTCAGGAAAGTA TTTCTTTAACTGACA TERM 1703 1559544 - 1559569 + H 95 -11.3 -3.83744 | overlap 1559542 1559545 1559553 1559565 AACACCAGGCTGACA TTTTCCTGACA TTTT TGTCAGGAAAG TATTTCTTTAACTGA TERM 1704 1559545 - 1559568 + H 89 -12.6 -2.89523 | overlap 1559544 1559542 1559553 1559565 ACACCAGGCTGACAT TTTCCTGACA TTTT TGTCAGGAAA GTATTTCTTTAACTG YPA_1384 1559725 - 1560816 + | hypothetical protein YPA_1385 1561007 - 1561672 + | flavodoxin TERM 1705 1562110 - 1562124 + G 79 -7.1 -4.73682 | opp_overlap 1562109, overlap 1562089 TTTTTCTGTAAAATC TGGCG TATTT CGCCA TTTTCTCTTCTGGCG TERM 1706 1562181 - 1562191 + G 70 -3.2 -4.88736 | CAGTATTGTGGTATA CGGA GTG TCTG TTTTTATGGGTCGTG YPA_1386 1561687 - 1562382 + | hypothetical protein YPA_1387 1563433 - 1562591 - | hypothetical protein TERM 1707 1563461 - 1563478 + H 79 -7 -4.58242 | opp_overlap 1563461, overlap 1563456 TATGAAAACAAAAAA TCCACG CAAGCA CGTGGA TTTTATCGGTTTTTT TERM 1708 1563478 - 1563461 - H 100 -7.7 -5.83211 | opp_overlap 1563461 1563456 TATGAAAACAAAAAA TCCACGC AAGC ACGTGGA TTTTATCGGTTTTTT YPA_1388 1564064 - 1564720 + | hypothetical protein YPA_1389 1564717 - 1565547 + | putative esterase YPA_1390 1565555 - 1565953 + | putative rhodanese-like protein TERM 1709 1566002 - 1566034 + T 100 -16.5 -3.63744 | opp_overlap 1566007, overlap 1566007 GACACTTTTTTGCCT TAAAACGCCTGATGA ACT TCATCGGGCGTTTTG TATTTTAACGACAGA TERM 1710 1566029 - 1566007 - T 100 -12 -4.07568 | opp_overlap 1566002 1566007 TTTTTTGCCTTAAAA CGCCTGATGA ACT TCATCGGGCG TTTTGTATTTTAACG TERM 1711 1566007 - 1566029 + T 100 -14.2 -4.89567 | opp_overlap 1566007, overlap 1566002 TTTTTTGCCTTAAAA CGCCTGATGA ACT TCATCGGGCG TTTTGTATTTTAACG YPA_1391 1566510 - 1566001 - | integrase core subunit YPA_1392 1566842 - 1566528 - | hypothetical protein TERM 1712 1567076 - 1567059 - R 100 -11.3 -5.50723 | opp_overlap 1567059 CTATGAAAACAAAAA TCCACGC AATT GCGTGGA TTTTATAGCATTTTT TERM 1713 1567059 - 1567076 + r 100 -11.3 -4.47485 | opp_overlap 1567059 CTATGAAAACAAAAA TCCACGC AATT GCGTGGA TTTTATAGCATTTTT YPA_1393 1568230 - 1567139 - | translation-associated GTPase YPA_1394 1569014 - 1568394 - | peptidyl-tRNA hydrolase TERM 1714 1568550 - 1568534 - G 74 -7.3 -4.18018 | opp_overlap 1568534 GGGGTTTACCCAAAA CAAAGCC AGT GACTTTG CTTTTATCACCAGGA TERM 1715 1569119 - 1569149 + H 93 -12.1 -3.68836 | opp_overlap 1569114 AAAAATAATTGTATA GTTGAATGATTTC CCTTC GGAATCATTCAAC TTCTTGGCTAAATAT YPA_1395 1569346 - 1569618 + | hypothetical protein TERM 1716 1569685 - 1569650 - T 80 -9 -3.92577 | opp_overlap 1569655, overlap 1569655 GAATCTTCAAAAACA GAAAACCCGTTGTCGC ACAG GCTTCAACGGGTTTTT CTTTATCTGCTTCAA TERM 1717 1569680 - 1569655 - T 100 -8.9 -4.98672 | opp_overlap 1569655, overlap 1569650 TTCAAAAACAGAAAA CCCGTTGTCGC ACAG GCTTCAACGGG TTTTTCTTTATCTGC TERM 1718 1569655 - 1569680 + T 100 -8.9 -5.42975 | opp_overlap 1569655 1569650 TTCAAAAACAGAAAA CCCGTTGTCGC ACAG GCTTCAACGGG TTTTTCTTTATCTGC YPA_1396 1570767 - 1569820 - | ribose-phosphate pyrophosphokinase YPA_1398 1572007 - 1571108 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YPA_1397 1571037 - 1571861 + | hypothetical protein lolB 1572632 - 1572009 - | outer membrane lipoprotein LolB hemA 1572884 - 1574200 + | glutamyl-tRNA reductase TERM 1719 1574589 - 1574608 + G 79 -7.1 -4.60487 | opp_overlap 1574577, overlap 1574591 AATCCGCGCGGGGAC TGGCGGC GATGAA GCCGCTA TTTTTGCCGGTGATA prfA 1574233 - 1575315 + | peptide chain release factor 1 YPA_1402 1575315 - 1576145 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YPA_1403 1576209 - 1576610 + | hypothetical protein YPA_1404 1576607 - 1577416 + | putative transcriptional regulator YPA_1405 1577512 - 1578366 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 1720 1578508 - 1578485 - T 100 -11 -5.46657 | overlap 1578499 1578503 TAGGGCAATAAAAAA GGCAGCGTAG GCAA CTAAGCTGCC TCAGACTGCTGACAA TERM 1721 1578597 - 1578571 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1578580, overlap 1578572 1578587 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1722 1578598 - 1578572 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1578580, overlap 1578571 1578587 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1723 1578676 - 1578699 + T 81 -5.2 -5.1861 | opp_overlap 1578671, overlap 1578677 TTGTCAATAACCTCA CGCAGCGTAG GTAA CTAAGCTGCC TTTTTTGATAATCAA TERM 1724 1578677 - 1578698 + T 75 -8.7 -3.70443 | opp_overlap 1578671, overlap 1578676 TGTCAATAACCTCAC GCAGCGTAG GTAA CTAAGCTGC CTTTTTTGATAATCA YPA_1406 1579049 - 1578720 - | SulP family sulfate permease YPA_1407 1579844 - 1579065 - | transposase/IS protein TERM 1725 1579763 - 1579777 + g 77 -11.4 -3.3506 | overlap 1579776 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1408 1580866 - 1579844 - | transposase for insertion sequence IS100 TERM 1726 1580888 - 1580870 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_1409 1582376 - 1580880 - | putative sulfate transporter YchM TERM 1727 1583198 - 1583177 - R 100 -6.5 -5.95166 | TGTAACCAAAAAAAA GGCCCCGAC TTTC GTCAGAACC TTATTTTTGAATTTG TERM 1728 1583300 - 1583337 + r 88 -12.7 -2.62184 | CACTCAGACACCTCA CCGTTTCGTTGCGCCGT TATA GTGGTGCAACGGGGCGG TACTATAGGGGGCGA TERM 1729 1583461 - 1583447 - R 74 -10 -3.18452 | ATTAGGTGAATTTAA CGCCAA TTT TTGGCG GTGGCGGGGGAGTCA YPA_1410 1584318 - 1583443 - | hypothetical protein TERM 1730 1584531 - 1584503 - R 75 -10.3 -2.87564 | overlap 1584523 TCATTCGCTGATACA GTCGCCGTTTCGT CGA ACAATACAGCGAC TGTACCCGCCAAGGA YPA_1411 1585701 - 1584619 - | hypothetical protein YPA_1412 1586557 - 1585721 - | putative binding-protein-dependent transport system membrane protein YPA_1413 1587420 - 1586554 - | putative binding-protein-dependent transport system membrane protein TERM 1731 1586757 - 1586746 - G 85 -7.2 -4.87665 | GGCGACCGAGAAAAA GGCG AAAT CGCC CAGTGCACCGATAAA YPA_1414 1588322 - 1587417 - | hypothetical protein TERM 1732 1588191 - 1588209 + gH 100 -16 -3.07307 | opp_overlap 1588191 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1733 1588209 - 1588191 - GH 100 -16 -4.36914 | opp_overlap 1588191 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1415 1588322 - 1588780 + | transposase for the IS1541 insertion element TERM 1734 1588858 - 1588882 + Tr 93 -9.9 -4.3953 | opp_overlap 1588861, overlap 1588860 1588861 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCTGCTTCAG TERM 1735 1588860 - 1588880 + Tr 100 -12.5 -3.79611 | opp_overlap 1588861, overlap 1588858 1588861 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCTGCTTC TERM 1736 1588861 - 1588879 + Tr 100 -16 -2.86682 | opp_overlap 1588861, overlap 1588860 1588858 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTGCTT TERM 1737 1588879 - 1588861 - TR 100 -16 -4.8048 | opp_overlap 1588861 1588860 1588858 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTGCTT YPA_1416 1589209 - 1588868 - | putative ABC transporter, ATP-binding subunit YPA_1417 1589409 - 1590239 + | hypothetical protein YPA_1418 1590253 - 1591365 + | putative transcriptional regulatory protein TERM 1738 1591483 - 1591470 - f 76 -2.5 -5.252 | opp_overlap 1591463 TACTGGTATAAAAAA TTTAT TGAT ATAAA ACAGTGATTGATACA TERM 1739 1591611 - 1591593 - f 100 -8.1 -5.80951 | opp_overlap 1591593 1591592 ATGCAAAAGAAAAAA CCCAACC ATAAA GGTCGGG GTTTATTATTTGGCG TERM 1740 1591831 - 1591847 + F 73 -7.3 -4.16016 | overlap 1591823 AAAGTTATAGCAATT TGCTGAT TTC ATCGGCA TTTATTGAGGGATAC YPA_1419 1592000 - 1592737 + | putative hydrolase YPA_1420 1592774 - 1593334 + | hypothetical protein TERM 1741 1593779 - 1593820 + T 78 -8.7 -3.80625 | GTAGCGTGAAATGAC CTGTGCCGGTTAGTCAGTC AATG GGATGACTAATTGGCCCGG TTTAACTTCTAACCC YPA_1421 1594351 - 1593788 - | hypothetical protein TERM 1742 1594222 - 1594234 + g 70 -4.9 -4.62302 | TACCGATCTGTTTTT CATAA TTA TTATG TTTTTGCAGGTATTC TERM 1743 1594740 - 1594693 - R 79 -10.8 -3.14931 | gap 1, opp_overlap 1594705 CGTATGCGCGAGGAA TGT-GCTTATCAACCGGAAAGGC AAA ACGTCTCCGGTTGATAAGGGACA TAACGTTAGCTGCTG YPA_1422 1595951 - 1594746 - | multidrug resistance protein MdtH TERM 1744 1595707 - 1595723 + g 70 -8.7 -3.53012 | opp_overlap 1595720 GCTCGCATTAGCATC CCGGTGA CAA TCATCGG TTTGGCACCGAACCG YPA_1423 1596245 - 1596829 + | ribosomal-protein-S5-alanine N-acetyltransferase TERM 1745 1597484 - 1597447 - g 79 -5.5 -5.0133 | opp_overlap 1597469, overlap 1597449 TAGCCCTTGAAAAAA CAGCCCTTGAAGCTAGG GTTG CCCAGCTTGAACAGCAG GTTATCCAGTTGTCA TERM 1746 1597482 - 1597449 - g 71 -6.7 -4.13561 | opp_overlap 1597469, overlap 1597447 GCCCTTGAAAAAACA GCCCTTGAAGCTAGG GTTG CCCAGCTTGAACAGC AGGTTATCCAGTTGT TERM 1747 1597720 - 1597734 + G 82 -7.1 -4.88736 | TGGATACGCTCGCTG CGGCA AGTGA TGCCG TTTTTGTCCATAGTA YPA_1424 1596837 - 1598447 + | putative oxidoreductase TERM 1748 1598650 - 1598676 + F 71 -8.7 -3.34894 | opp_overlap 1598654, overlap 1598648 1598651 1598654 CCCCCATTGGGTAGA GCAACGCCTGC AGACC GTAGGCGTTGG TATTTACAGCACATT TERM 1749 1598651 - 1598675 + F 83 -12.2 -2.60615 | opp_overlap 1598654, overlap 1598650 1598648 1598654 CCCCATTGGGTAGAG CAACGCCTGC AGACC GTAGGCGTTG GTATTTACAGCACAT TERM 1750 1598821 - 1598833 + G 90 -6.2 -5.28826 | ATTTGGTGCAGGTAT GGCG ACGGA CGCC TTTTTTGTGGCATTT YPA_1425 1598714 - 1600249 + | hypothetical protein TERM 1751 1600388 - 1600372 - f 71 -9.4 -2.96538 | opp_overlap 1600372 ATAATGTATTATATA GCCCGA TAATT TCGGGC TTTTTTACATATTGA TERM 1752 1600372 - 1600388 + F 100 -9.4 -5.1615 | opp_overlap 1600372 ATAATGTATTATATA GCCCGA TAATT TCGGGC TTTTTTACATATTGA TERM 1753 1600964 - 1600953 - g 100 -4.4 -5.74122 | CATCACAGAAAAAAA TCTC CCCA GAGA AAATATGCCTGCCAA YPA_1426 1600745 - 1602406 + | putative hemolysin activator protein TERM 1754 1605286 - 1605272 - g 71 -5.7 -4.42238 | overlap 1605283 GCAGTCGAACCAAAA CGTCA GACAA TGACG CGTTAGCGTTGGTTA YPA_1427 1602556 - 1607331 + | putative hemolysin TERM 1755 1607372 - 1607385 + T 100 -9.5 -5.07107 | CTAATCGTTTTTTAA GGCCC CGAG GGGCC TTTTTTGACGATTTA TERM 1756 1607413 - 1607439 + T 74 -8 -3.95674 | TTACATCCGCTCAAC GGTTTGAATACC CAA GGTGTCCAGACC TTGTTTCAGCGTTTT argS 1609128 - 1607398 - | arginyl-tRNA synthetase YPA_1429 1609759 - 1610334 + | hypothetical protein TERM 1757 1610739 - 1610756 + G 76 -2.7 -5.06414 | gap 1, overlap 1610743 GGTTCATCCGATAGT TCGGCCAC GTG GTGG-TGA TTTTTGTTACAGCAG YPA_1430 1610566 - 1611330 + | copper homeostasis protein CutC TERM 1758 1611493 - 1611517 + T 100 -10 -4.80959 | ATATAACGAACGGTA TCCCCCATCT GGGTG AGTTGGGGGA TTTTCTTATGGCTTA YPA_1431 1612494 - 1611523 - | hypothetical protein YPA_1432 1613294 - 1612491 - | hypothetical protein TERM 1759 1612571 - 1612587 + g 70 -2.1 -4.94992 | opp_overlap 1612570, overlap 1612572 CCGCGTGTTCAAACC CCGCCTG ATG CAGACGA TTTTTGTGGGTTTCC TERM 1760 1613425 - 1613409 - R 100 -10.8 -4.46072 | GGGAATAAACATAAA GGCGGC GATAT GCCGCC CAGACTAACGGTTGC YPA_1433 1613880 - 1613485 - | hypothetical protein YPA_1434 1614875 - 1614060 - | hypothetical protein TERM 1761 1616019 - 1616032 + G 74 -2.3 -5.16841 | TAACCGTCGTCGTGA TCTGG GTGG CCTGA TTTTTATTGATATGC aspS 1615933 - 1617729 + | aspartyl-tRNA synthetase TERM 1762 1618096 - 1618110 + G 73 -11.4 -3.0263 | ACCAGTGGTTGGATG CGGCAG AGG CTGCCG TATTGACCAAGTCCT ntpA 1617729 - 1618172 + | dATP pyrophosphohydrolase TERM 1763 1618277 - 1618263 - g 73 -5.6 -4.66537 | overlap 1618265 1618273 TGGGCCAACACAAAA CACCGC AAA GCGGCA CAGGATGCCAAACGC TERM 1764 1618275 - 1618265 - g 72 -8.2 -3.94773 | overlap 1618263 1618273 GGCCAACACAAAACA CCGC AAA GCGG CACAGGATGCCAAAC YPA_1437 1618230 - 1618973 + | hypothetical protein ruvC 1619182 - 1619703 + | Holliday junction resolvase TERM 1765 1619742 - 1619761 + F 100 -12.2 -5.24129 | opp_overlap 1619742 TTAACTGTTATCACA GGCTGGAT ATCC ATCCAGCC TTTTTTGTGCCCAGA TERM 1766 1619761 - 1619742 - f 83 -12.2 -2.79831 | opp_overlap 1619742 TTAACTGTTATCACA GGCTGGAT ATCC ATCCAGCC TTTTTTGTGCCCAGA TERM 1767 1619780 - 1619798 + F 100 -16 -3.07307 | opp_overlap 1619780 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1768 1619798 - 1619780 - f 100 -16 -4.36914 | opp_overlap 1619780 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1439 1619911 - 1620369 + | transposase for the IS1541 insertion element TERM 1769 1620443 - 1620475 + F 100 -11.3 -4.0162 | opp_overlap 1620450, overlap 1620447 1620449 1620450 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATGCTATAAACA TERM 1770 1620447 - 1620471 + F 100 -9.9 -4.60949 | opp_overlap 1620450, overlap 1620443 1620449 1620450 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATGCTATA TERM 1771 1620449 - 1620469 + F 100 -12.5 -3.90309 | opp_overlap 1620450, overlap 1620447 1620443 1620450 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATGCTA TERM 1772 1620450 - 1620468 + F 100 -16 -2.93101 | opp_overlap 1620450, overlap 1620449 1620447 1620443 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGCT TERM 1773 1620468 - 1620450 - f 100 -16 -4.8048 | opp_overlap 1620450 1620449 1620447 1620443 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGCT TERM 1774 1620750 - 1620733 - g 73 -6.3 -4.58663 | gap 1 ATCATTCTGGAAAAA CAGCCACC GCT GGTG-CTG CTGGAAACAAACGGT TERM 1775 1621067 - 1621053 - g 71 -5.6 -4.56597 | opp_overlap 1621055, overlap 1621055 GGGTGTCGGTAAAAA GACCGC CGA GCGGTT AGTGGTCGAAATGAA TERM 1776 1621065 - 1621055 - g 72 -8.2 -3.90048 | opp_overlap 1621055, overlap 1621053 GTGTCGGTAAAAAGA CCGC CGA GCGG TTAGTGGTCGAAATG ruvA 1620631 - 1621311 + | Holliday junction DNA helicase motor protein ruvB 1621473 - 1622477 + | Holliday junction DNA helicase B TERM 1777 1622474 - 1622532 + T 72 -9.8 -2.85803 | gap 1, opp_overlap 1622478 1622480, overlap 1622458 TATTACTCGGGAAGA ATAATACGTTTCACGCTGTGGGGGTTA TAGGCC TAAACCCCACAGCGTGAAGTG-ATGAC TATCCTCGTGCTTTT TERM 1778 1622528 - 1622478 - T 89 -10.6 -3.94877 | gap 1, opp_overlap 1622458 1622474, overlap 1622480 ACTCGGGAAGAATAA TACGTTTCACGCTGTGGGGGTTA TAGGCC TAAACCCCACAGCGTGAAGTG-A TGACTATCCTCGTGC TERM 1779 1622527 - 1622480 - T 100 -15.7 -3.56318 | opp_overlap 1622474, overlap 1622478 TCGGGAAGAATAATA CGTTTCACGCTGTGGGGGTTA TAGGCC TAAACCCCACAGCGTGAAGTG ATGACTATCCTCGTG znuB 1623317 - 1622532 - | high-affinity zinc transporter membrane component TERM 1780 1623260 - 1623247 - G 76 -5.9 -4.61566 | CGCCAAACGACAAAA GACCC CAGC GGGCC AGCGGCTGTTGCCAG znuC 1624075 - 1623314 - | high-affinity zinc transporter ATPase TERM 1781 1623762 - 1623778 + g 76 -4.3 -5.00616 | opp_overlap 1623741 TGCACCCGTGTGAGT GCAGGCA GAA TGTCGGC TTTTTTCACCCCCGG TERM 1782 1623892 - 1623864 - G 70 -8.1 -3.65812 | TTTTGCGGAACATAA CCGATGCGTAAGC CAG GCTCACGAACCAG AGATCCACTACTTGG znuA 1624148 - 1625104 + | high-affinity zinc transporter periplasmic component TERM 1783 1625217 - 1625237 + G 86 -8.2 -4.60797 | GACTGTAATGACACT GGCCGTCG CTGTT TGGCGGCC TTTTATCTATCACCC YPA_1445 1625125 - 1626441 + | hypothetical protein TERM 1784 1626448 - 1626471 + F 73 -8.8 -3.5511 | overlap 1626446 1626450 CTGGATTAGCAGTGA TACCGTCAGG TTAG CCTGTCGGTG TGTTTATCCCTAAGC TERM 1785 1626450 - 1626469 + F 74 -9.2 -3.34988 | overlap 1626448 1626446 GGATTAGCAGTGATA CCGTCAGG TTAG CCTGTCGG TGTGTTTATCCCTAA TERM 1786 1626481 - 1626515 + F 100 -15.2 -3.74077 | overlap 1626486 TCGGTGTGTTTATCC CTAAGCTGCCAGTG AGTTGAG CACTGGCAGTTTAG TTTCAGTCTGTCAGC TERM 1787 1626486 - 1626510 + F 100 -11.5 -4.09556 | overlap 1626481 GTGTTTATCCCTAAG CTGCCAGTG AGTTGAG CACTGGCAG TTTAGTTTCAGTCTG YPA_1446 1626708 - 1627670 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 1788 1627791 - 1627770 - T 100 -15.9 -4.36595 | opp_overlap 1627766 1627765 CAGTTAAAGGTAAAA GGCCCGCTA GTGA TAGCGGGCC TGAGGTTATTGACAA TERM 1789 1627959 - 1627990 + T 100 -10.8 -4.46757 | overlap 1627964 GGGGTTTGTCAGCAG TCTGAGGCCCGCTA GTGA TAGCGGGCCTTTGC TTTTCTGCCTATCTT TERM 1790 1627964 - 1627985 + T 100 -15.9 -4.27483 | overlap 1627959 TTGTCAGCAGTCTGA GGCCCGCTA GTGA TAGCGGGCC TTTGCTTTTCTGCCT YPA_1447 1629457 - 1628015 - | pyruvate kinase YPA_1448 1630656 - 1629787 - | DNA-binding transcriptional regulator HexR YPA_1449 1631009 - 1632493 + | glucose-6-phosphate 1-dehydrogenase TERM 1791 1632547 - 1632512 - f 78 -9.7 -3.42574 | overlap 1632514 1632515 CTAACCGCACGATAA TAGCGCGCCACCAGA GGCGAA TCTGATGGCGCGTGA CTGCCAGGGAGAGCA TERM 1792 1632545 - 1632514 - f 95 -12.3 -3.28219 | overlap 1632512 1632515 AACCGCACGATAATA GCGCGCCACCAGA GGCGAA TCTGATGGCGCGT GACTGCCAGGGAGAG TERM 1793 1632544 - 1632515 - f 100 -15.8 -2.56449 | overlap 1632514 1632512 ACCGCACGATAATAG CGCGCCACCAGA GGCGAA TCTGATGGCGCG TGACTGCCAGGGAGA YPA_1450 1632735 - 1633376 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 1794 1633429 - 1633455 + F 100 -11.6 -5.03314 | opp_overlap 1633427 1633429 1633433 1633434, overlap 1633434 TATTTTCACCAAAGA CAGAGCCTCTGC ATT GCAGGGGTTTTG TTTTTTCAGAATCAC TERM 1795 1633434 - 1633450 + F 100 -10.1 -5.42198 | opp_overlap 1633429 1633434 1633433 1633427, overlap 1633429 TCACCAAAGACAGAG CCTCTGC ATT GCAGGGG TTTTGTTTTTTCAGA YPA_1451 1634091 - 1634534 + | putative integral membrane protein YPA_1452 1634521 - 1634850 + | multidrug efflux system protein MdtI TERM 1796 1634897 - 1634870 - T 70 -9.8 -2.52015 | opp_overlap 1634871, overlap 1634869 GCCAGAGGCAGTAAG CGGAGGGTAGCC TGGC GGCTACTCTCCT TTGTTTTTGTGGCTT TERM 1797 1634871 - 1634896 + T 100 -15.5 -4.97405 | opp_overlap 1634870 1634869 CCAGAGGCAGTAAGC GGAGGGTAGCC TGGC GGCTACTCTCC TTTGTTTTTGTGGCT YPA_1453 1635326 - 1634982 - | hypothetical protein TERM 1798 1636019 - 1636006 - g 74 -9.5 -3.53012 | TGTTTTGTGGTGAAA GCCCG TCGT CGGGC GATGGATGCTGATGT TERM 1799 1636035 - 1636054 + G 100 -10 -4.82901 | opp_overlap 1636047 GATGGATGCTGATGT GGTGGTGG TAAA CCACCATC TTTTTCTGGCGGACA TERM 1800 1636632 - 1636621 - g 78 -5.8 -4.7497 | opp_overlap 1636620 1636621 TTGATTGAGGAAAAA CCAG GCAC CTGG ATTTTCACCTCAGCG YPA_1454 1635457 - 1637361 + | DEAD box family helicase YPA_1455 1637433 - 1638131 + | hypothetical protein YPA_1456 1638268 - 1638873 + | putative lipoprotein TERM 1801 1638911 - 1638894 - f 100 -9.1 -4.82901 | gap 1 TTTGGGCCACAAAAA GGCGC-GG AGT CCAGCGCC TGAGGTTATTGACAA TERM 1802 1638989 - 1639015 + F 72 -10.1 -2.87229 | gap 1, opp_overlap 1638978, overlap 1638984 1638990 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTACCGT TERM 1803 1638990 - 1639016 + F 84 -10.1 -3.79519 | gap 1, opp_overlap 1638978, overlap 1638984 1638989 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTACCGTT TERM 1804 1639067 - 1639084 + F 100 -12.7 -4.64844 | TTGTCAGCAGTCAGA GGCGCTG AGTC CAGCGCC TTTTCTATATCTACA TERM 1805 1639623 - 1639638 + G 71 -6.1 -4.29106 | opp_overlap 1639633 CGCGGCGTTGCGTTA TGCGG ACCAAC CCGCA TTTATTAATATGGGC YPA_1457 1639483 - 1641204 + | long-chain-fatty-acid--CoA ligase TERM 1806 1641259 - 1641223 - f 100 -14.6 -3.767 | gap 1, opp_overlap 1641224 1641227, overlap 1641224 1641226 1641230 1641233 GACGGAGTCACTAAA TCATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TGT TTGTTATCGAACTAT TERM 1807 1641258 - 1641224 - f 100 -18.1 -2.85699 | gap 1, opp_overlap 1641224 1641227, overlap 1641223 1641226 1641230 1641233 ACGGAGTCACTAAAT CATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TG TTTGTTATCGAACTA TERM 1808 1641224 - 1641258 + F 100 -18.1 -4.31433 | gap 1, opp_overlap 1641223 1641224 1641226 1641230 1641233, overlap 1641227 ACGGAGTCACTAAAT CATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TG TTTGTTATCGAACTA TERM 1809 1641257 - 1641226 - f 100 -17.4 -2.97667 | opp_overlap 1641224 1641227, overlap 1641224 1641223 1641230 1641233 GGAGTCACTAAATCA TCAACAACGCCGGT TATC ACCGGCGTTGTTGT GTTTGTTATCGAACT TERM 1810 1641227 - 1641256 + F 100 -20.9 -3.75817 | opp_overlap 1641226 1641224 1641223 1641230 1641233, overlap 1641224 GAGTCACTAAATCAT CAACAACGCCGGT TATC ACCGGCGTTGTTG TGTTTGTTATCGAAC TERM 1811 1641253 - 1641230 - f 100 -16.8 -3.34227 | opp_overlap 1641227 1641224, overlap 1641226 1641224 1641223 1641233 TCACTAAATCATCAA CAACGCCGGT TATC ACCGGCGTTG TTGTGTTTGTTATCG TERM 1812 1641250 - 1641233 - f 100 -12.7 -3.79909 | opp_overlap 1641227 1641224, overlap 1641230 1641226 1641224 1641223 CTAAATCATCAACAA CGCCGGT TATC ACCGGCG TTGTTGTGTTTGTTA TERM 1813 1642299 - 1642279 - g 78 -2.6 -5.24129 | opp_overlap 1642279, overlap 1642281 CCGGGGTACAAAAAA GTCTTTAA AGATA TTAAAGCC TTGATTCAATCGGTC YPA_1458 1641325 - 1642485 + | ribonuclease D TERM 1814 1642508 - 1642537 + T 70 -10.1 -2.54204 | opp_overlap 1642503 1642505 1642526, overlap 1642507 1642506 1642533 1642534 TGATATTAATCAGCC TTCAGGGTGGGAT ATTA ATTCCACGCTGAA ACTTTTCAGTTTTAA TERM 1815 1642533 - 1642546 + T 73 -5.3 -4.61873 | opp_overlap 1642526 1642505, overlap 1642508 1642507 1642506 1642534 GATATTAATTCCACG CTGAA ACTT TTCAG TTTTAATTTATGAAC TERM 1816 1642710 - 1642679 - T 100 -17.5 -3.43117 | opp_overlap 1642682, overlap 1642682 ACAGTCAATTGAGAA TAACGCCCCTGTA AATAAA TACAGGGGCGTTA TTGAGAAGAAATCAT TERM 1817 1642682 - 1642707 + T 100 -14.8 -3.61517 | opp_overlap 1642679 1642682 GTCAATTGAGAATAA CGCCCCTGTA AATAAA TACAGGGGCG TTATTGAGAAGAAAT TERM 1818 1642707 - 1642682 - T 100 -14.8 -3.84808 | opp_overlap 1642682, overlap 1642679 GTCAATTGAGAATAA CGCCCCTGTA AATAAA TACAGGGGCG TTATTGAGAAGAAAT minE 1642991 - 1642722 - | cell division topological specificity factor MinE YPA_1460 1643807 - 1642995 - | cell division inhibitor MinD minC 1644518 - 1643832 - | septum formation inhibitor TERM 1819 1644188 - 1644203 + g 70 -4.6 -4.70879 | overlap 1644190 1644199 CCGGCGGACTGATGA CCGGCT CTGG AGCCAG TTTTTGGCCTTTACC TERM 1820 1644724 - 1644740 + H 74 -6.5 -4.55491 | TTGACCCCCTATATT TAGCGAC TCA GCCGCTA TTTTATGATTGCATA TERM 1821 1644744 - 1644755 + H 71 -3 -5.03145 | ACTCAGCCGCTATTT TATG ATTG CATA TTTTTTCAACACTTG YPA_1462 1645239 - 1645511 + | hypothetical protein YPA_1463 1645652 - 1646737 + | putative lipoprotein YPA_1464 1646808 - 1647464 + | hypothetical protein TERM 1822 1647503 - 1647472 - f 82 -7.9 -4.45693 | overlap 1647473 1647474 TAATATAAAGAGAAA CGTGCCGTCCGAC TCTACT GTCGGGCGGCAAA ACTTGCATCTGTAAG TERM 1823 1647502 - 1647473 - f 74 -9.2 -3.25789 | overlap 1647472 1647474 AATATAAAGAGAAAC GTGCCGTCCGAC TCTACT GTCGGGCGGCAA AACTTGCATCTGTAA TERM 1824 1647501 - 1647474 - f 86 -12.7 -2.53847 | overlap 1647473 1647472 ATATAAAGAGAAACG TGCCGTCCGAC TCTACT GTCGGGCGGCA AAACTTGCATCTGTA YPA_1465 1647567 - 1648013 + | hypothetical protein YPA_1466 1649278 - 1648040 - | hypothetical protein TERM 1825 1648411 - 1648424 + g 80 -4.5 -5.20328 | opp_overlap 1648383 1648381 TGCCAAATTCGCGAA GGTGG ACAT CTACC TTTATTTTTTTCCCC TERM 1826 1649326 - 1649344 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1467 1649348 - 1650370 + | transposase for insertion sequence IS100 TERM 1827 1650451 - 1650437 - g 77 -11.4 -3.3506 | overlap 1650428 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1468 1650370 - 1651149 + | transposase/IS protein YPA_1469 1651165 - 1651263 + | hypothetical protein YPA_1470 1651264 - 1652376 + | hypothetical protein TERM 1828 1652410 - 1652395 - f 70 -7.6 -3.62775 | ATTACGCTTTAACAA TTACCG CCAA CGGTAA CAAACTGAGTTATCC TERM 1829 1652436 - 1652453 + F 87 -6.2 -5.14563 | TATCCAAAATCTGAG CCTCGC CATCGT GCGGGG TTTTTTAATGGGCCA TERM 1830 1652493 - 1652483 - f 74 -6.8 -4.2461 | AGGCCCAGCAATAAA TCCC AAG GGGA CAGCATGCTATTCCG TERM 1831 1652957 - 1652943 - g 76 -8.5 -4.18018 | CCGCCGCATTGAAAA CCGGC GCATT GCCGG GCGCTGCTGACGACA YPA_1471 1652498 - 1653271 + | hypothetical protein YPA_1472 1653285 - 1654490 + | hypothetical protein TERM 1832 1654505 - 1654518 + G 100 -9.5 -4.66537 | overlap 1654516 ATGGTGATGACTATG GGGGC TGTG GCCCC TTTTCTATTGGAGGA TERM 1833 1654734 - 1654713 - g 70 -8 -3.71672 | overlap 1654698 1654709 GCCGAGCAAAACTAA CTCAGCCA TTACCC TGGCCGAG ATCAGATATCATTTT YPA_1473 1654490 - 1655020 + | hypothetical protein YPA_1474 1655083 - 1655271 + | hypothetical protein YPA_1475 1655273 - 1655623 + | hypothetical protein YPA_1476 1655625 - 1656209 + | hypothetical protein YPA_1477 1656206 - 1656613 + | hypothetical protein TERM 1834 1656648 - 1656635 - f 70 -9.5 -2.78058 | opp_overlap 1656635, overlap 1656632 ATCAATCCAACACCA CCGGC CTAT GCCGG TTTTTTTATATCCAA TERM 1835 1656635 - 1656648 + F 100 -9.5 -5.71712 | opp_overlap 1656635 1656632 ATCAATCCAACACCA CCGGC CTAT GCCGG TTTTTTTATATCCAA YPA_1478 1656679 - 1657599 + | hypothetical protein YPA_1479 1657612 - 1657923 + | hypothetical protein TERM 1836 1659446 - 1659431 - g 76 -7.6 -4.38712 | CTCACTTTCAGAAAA TGCCAA CAAT TTGGCA GAGAATGCAGATAAT TERM 1837 1660399 - 1660389 - g 80 -2.4 -5.46657 | GAGTCTAACAAAAAA GCGG CAG CAGC AGGGAAAGCTACATT TERM 1838 1660513 - 1660494 - g 78 -2.2 -5.27023 | gap 1 ACGCCAAAAATAAAA GCT-TATCA AGA CGATATAGC AACAAGGGAGTTACT YPA_1480 1658232 - 1661735 + | putative phage tail protein YPA_1481 1661738 - 1662079 + | hypothetical protein TERM 1839 1662217 - 1662234 + F 100 -10.5 -5.60993 | opp_overlap 1662204 1662202 1662217, overlap 1662205 CACGCCCTTTCTAAA GGCTGCC TTAT GGCGGCC TTTTTTTGTGCCCAG TERM 1840 1662234 - 1662217 - f 71 -8.3 -3.53224 | opp_overlap 1662205 1662217, overlap 1662204 1662202 CACGCCCTTTCTAAA GGCTGCC TTAT GGCGGCC TTTTTTTGTGCCCAG TERM 1841 1662254 - 1662272 + F 100 -16 -3.07307 | opp_overlap 1662254 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1842 1662272 - 1662254 - f 100 -16 -4.36914 | opp_overlap 1662254 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1482 1662385 - 1662843 + | transposase for the IS1541 insertion element TERM 1843 1662917 - 1662949 + F 100 -11.3 -3.92373 | opp_overlap 1662924, overlap 1662921 1662923 1662924 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATGGGTGAAATA TERM 1844 1662921 - 1662945 + F 100 -9.9 -4.57482 | opp_overlap 1662924, overlap 1662917 1662923 1662924 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATGGGTGA TERM 1845 1662923 - 1662943 + F 100 -12.5 -3.89305 | opp_overlap 1662924, overlap 1662921 1662917 1662924 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATGGGT TERM 1846 1662942 - 1662924 - f 100 -16 -4.8048 | opp_overlap 1662923 1662921 1662917 1662924 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG TERM 1847 1662924 - 1662942 + F 100 -16 -2.92499 | opp_overlap 1662924, overlap 1662923 1662921 1662917 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG YPA_1483 1662964 - 1663716 + | hypothetical protein TERM 1848 1663742 - 1663732 - g 79 -6.8 -4.63586 | opp_overlap 1663731 AGATGAGAGATAAAA CGCT TAA AGCG ATATTGGCCCATGCC YPA_1484 1663719 - 1664429 + | putative phage minor tail protein TERM 1849 1664633 - 1664650 + F 71 -3.4 -4.9218 | opp_overlap 1664608 GGTTATGCCGTTACA CCGAAG ACGAAA TTTCGG TTTTTGTCATAAGTA YPA_1485 1664690 - 1665322 + | hypothetical protein TERM 1850 1665363 - 1665340 - T 78 -5.2 -5.06414 | opp_overlap 1665345, overlap 1665345 TGCTCCGAATAAAAA CTAAACCCGC TCCG GCGGGTTTTT GCATTCTAGCCCACT TERM 1851 1665345 - 1665358 + T 100 -9.5 -4.78149 | opp_overlap 1665340 1665345 CGAATAAAAACTAAA CCCGC TCCG GCGGG TTTTTGCATTCTAGC TERM 1852 1665358 - 1665345 - T 95 -9.5 -4.43037 | opp_overlap 1665345, overlap 1665340 CGAATAAAAACTAAA CCCGC TCCG GCGGG TTTTTGCATTCTAGC TERM 1853 1665373 - 1665386 + T 100 -8.1 -5.46657 | GTTTTTGCATTCTAG CCCAC TCTG GTGGG TTTTTTATTGGCATC YPA_1486 1665940 - 1665401 - | putative phage regulatory protein YPA_1487 1666197 - 1667204 + | hypothetical protein TERM 1854 1667234 - 1667249 + F 80 -6.1 -4.85195 | opp_overlap 1667234 TCACACAAAACCCAA CCCAC TTAACT GTGGG TTTTTGCGTTATTTT YPA_1488 1667303 - 1667854 + | putative phage-related membrane protein TERM 1855 1668234 - 1668249 + F 100 -8.2 -5.45652 | opp_overlap 1668234 TGTAAAACAAATCGA GGTCGC TTAG GCGGCC TTTTTTATTGGAGAT YPA_1489 1668268 - 1668888 + | putative phage tail assembly protein TERM 1856 1669021 - 1668984 - f 95 -12.9 -3.15999 | gap 1, opp_overlap 1668989 1668991, overlap 1668986 GTGTCAGACATGCAA CAGCAGATCACTAGCATC CAA GAGGC-AGTGATCTGCTA TCAAGATTTAAACCA TERM 1857 1669019 - 1668986 - f 100 -13.3 -3.14125 | gap 1, opp_overlap 1668989 1668991, overlap 1668984 GTCAGACATGCAACA GCAGATCACTAGCATC CAA GAGGC-AGTGATCTGC TATCAAGATTTAAAC TERM 1858 1669358 - 1669333 - f 84 -11.1 -3.58726 | TCCTCCGATAGATAA CACCCTAGCCA TGCG CGGCTTGGGTG GGCTGACCTTACACA TERM 1859 1669425 - 1669441 + F 100 -12.3 -5.64274 | AATAAACACGCCAAT GCCCACA CTT TGTGGGC TTTTTTTATGGGTGA TERM 1860 1670061 - 1670040 - g 70 -4.3 -4.6902 | GTACAAGGCGAAAAA CAGCCAATG CCAA CTCTGGCCG CATTGCCGACAAGAT YPA_1490 1669460 - 1672663 + | putative phage host specificity protein YPA_1491 1672648 - 1673661 + | hypothetical protein TERM 1861 1673898 - 1673882 - g 73 -5.1 -4.6821 | opp_overlap 1673882 AATGGCAATATAAAA GAATCCG TGG CCGATTC CTCTTATGCAATTAT YPA_1492 1673678 - 1674595 + | hypothetical protein YPA_1493 1674606 - 1675025 + | putative phage tail fiber assembly protein YPA_1494 1675022 - 1675177 + | hypothetical protein TERM 1862 1675272 - 1675251 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_1495 1676454 - 1675246 - | transposase for the IS285 insertion element TERM 1863 1676708 - 1676729 + r 78 -8.7 -3.827 | TAAATTGCTTTAGCC GATGACAGC CTAA GCTGCCATC TTTACCTTCATTGTT YPA_1496 1676995 - 1676759 - | hypothetical protein TERM 1864 1676924 - 1676908 - GR 83 -5.1 -5.0925 | overlap 1676910 GCGGAAAACCAAAAA TACCCAC GAA GTAGGCA ACGACAAACCAAGTC YPA_1497 1677932 - 1676970 - | hypothetical protein YPA_1498 1679135 - 1677936 - | putative aminotransferase YPA_1499 1679892 - 1679152 - | hypothetical protein TERM 1865 1680740 - 1680765 + H 70 -7.7 -3.65046 | opp_overlap 1680739 TTTTCTTTAATAGAT TCACTATTCCT GCGC AGGAATAATGA TTATTAACATAGCCA TERM 1866 1680912 - 1680893 - H 80 -6.4 -4.88067 | ATGCATGGAGAAAAA GGTGAGGA TATG TCCTTACC CATGGCGGTTTTTAC YPA_1500 1680984 - 1681340 + | hypothetical protein TERM 1867 1681392 - 1681427 + T 73 -8.5 -3.66378 | opp_overlap 1681392 1681391 1681386 ATTGACTAATGAAAC TCAGATCAACAGG GGATGGAAAA TCTGTTGATCTGA TTTCAATCCAATCTG TERM 1868 1681731 - 1681713 - T 100 -11.7 -4.98522 | opp_overlap 1681713 AATCTGATATAAAAA TGGCGCC AGAGA GGCGCCA TTGATAATAAAGATA TERM 1869 1681713 - 1681731 + T 84 -11.7 -3.21416 | opp_overlap 1681713 AATCTGATATAAAAA TGGCGCC AGAGA GGCGCCA TTGATAATAAAGATA YPA_1501 1682302 - 1681757 - | disulfide bond formation protein B nhaB 1684097 - 1682523 - | sodium/proton antiporter TERM 1870 1682735 - 1682745 + g 72 -8.2 -3.83026 | opp_overlap 1682734 1682735 GCAGGAACAAGAAAG CGGC CTG GCCG TTTGGTGTCGCCACG TERM 1871 1682933 - 1682922 - G 78 -5.8 -4.74917 | ATTAAACAGATAAAA CAGC GATA GCTG AGCGGAAGGCGAGGC TERM 1872 1683631 - 1683616 - G 73 -3.2 -5.00846 | overlap 1683617 TAAATAGTATAAAAA CCAACG GATA CGCTGA TAACTACCGCGATTA TERM 1873 1683764 - 1683753 - G 71 -5.8 -4.32857 | opp_overlap 1683753 TTTCGTAAATACAAA CAGC AGCA GCTG TTTCATAAAGTAGAT TERM 1874 1684728 - 1684710 - g 70 -3 -4.88736 | overlap 1684720 CATCATCCAGAAAAA GCGCAAGA AAT TTTGGCGC GAGCGAAAACAGTGG YPA_1503 1684341 - 1685060 + | fatty acid metabolism regulator TERM 1875 1685231 - 1685247 + T 100 -10.1 -5.04385 | TTGTCAGCAGTCTGA GGGGCGT TTA ATGCCCC TTTTTTACCGATGTC YPA_1504 1686813 - 1685278 - | hypothetical protein TERM 1876 1688062 - 1688082 + G 77 -8.9 -3.97368 | overlap 1688058 CTACCGCGCTACTGG CCGGGCTGG TGT CTATCCCGG TTTATCCATTGAAGG TERM 1877 1688551 - 1688597 + G 80 -9.6 -3.98291 | opp_overlap 1688548, overlap 1688552 AGCCACTGAATATTG CCCCGTTACACGATATTCAC CCCATCC GTTAATATCGTGTAACGCGA TTATTTGCCGTTGTT TERM 1878 1688552 - 1688596 + G 78 -13.1 -2.9789 | opp_overlap 1688548, overlap 1688551 GCCACTGAATATTGC CCCGTTACACGATATTCAC CCCATCC GTTAATATCGTGTAACGCG ATTATTTGCCGTTGT YPA_1505 1687278 - 1688582 + | D-amino acid dehydrogenase small subunit YPA_1506 1689800 - 1688598 - | putative multidrug resistance protein TERM 1879 1690039 - 1690003 - R 100 -15.4 -5.5112 | CTCATCAATAAAAAA TGCTATTACCTGCCCA GAGGG TAGACAGGTAATAGCA GACAGGTAATGGCGG YPA_1507 1690934 - 1690065 - | hypothetical protein TERM 1880 1690904 - 1690925 + g 80 -2.9 -5.3671 | CCCAATGTTGACGAG GTGCACGGT AAAT ACCTTGAAC TTTTTTCATTATCTT YPA_1508 1691132 - 1692037 + | LysR family transcriptional regulator YPA_1509 1693190 - 1692072 - | hypothetical protein TERM 1881 1692704 - 1692689 - G 71 -6.8 -4.20084 | AGCAGGCACCTAAAA TGGCCA GCGT CGGCCA TAATCCGGCAAATTG TERM 1882 1693286 - 1693248 - R 78 -5.3 -4.9792 | opp_overlap 1693248 TAGCCCATAGAAAAA GCCGGAAAATGCTTTCT GAACA AGAAAAAATTAACCGGC TGATATTGCTGCTAA YPA_1510 1694572 - 1693298 - | hypothetical protein TERM 1883 1694620 - 1694677 + r 74 -9.9 -3.14307 | gap 1 CCACCGGCCTCACAC TGTCCCTTTGTCCTTGGCGTTACAGC ATGGTTA GCGGCAACGCCAAGGACGTAGTG-CA TAGTTTTGCCTTCCT YPA_1511 1696656 - 1694722 - | hypothetical protein TERM 1884 1696398 - 1696426 + g 70 -10.4 -3.01712 | opp_overlap 1696396 GATAAGAAACAATCT GTTCTATGGCTT CCTCC ATGCCATAGAAC TCTTCAAACGCAGGA YPA_1512 1697079 - 1697849 + | hypothetical protein TERM 1885 1697895 - 1697879 - T 93 -13.7 -2.78495 | opp_overlap 1697879, overlap 1697876 1697874 CTATGAGCAAGACCA TGGGGCC AAA GGCCCCA TTTTTATATTGACCG TERM 1886 1697879 - 1697895 + T 100 -13.7 -5.0916 | opp_overlap 1697876 1697874 1697879 CTATGAGCAAGACCA TGGGGCC AAA GGCCCCA TTTTTATATTGACCG YPA_1513 1698797 - 1697922 - | hypothetical protein TERM 1887 1699084 - 1699067 - R 100 -11.3 -5.05116 | opp_overlap 1699067 CTATAAACAAGAAAA GCCACTC GCGT GAGTGGC TTTAGGTAGAAATCT TERM 1888 1699067 - 1699084 + r 90 -11.3 -3.65529 | opp_overlap 1699067 CTATAAACAAGAAAA GCCACTC GCGT GAGTGGC TTTAGGTAGAAATCT YPA_1514 1700106 - 1699111 - | glyceraldehyde 3-phosphate dehydrogenase A TERM 1889 1700374 - 1700392 + H 82 -2.4 -5.70522 | CAGTTTAGGACAATT TTAACTGC TTT GTTGTTAA TTTTTTGTTATTATT YPA_1515 1700454 - 1700867 + | methionine sulfoxide reductase B YPA_1516 1700836 - 1701210 + | hypothetical protein TERM 1890 1701304 - 1701325 + T 100 -13 -4.56597 | opp_overlap 1701304 TCTGAATACAAAAAA TGGGCGCC GAGGCA GGCGCCCA TTTTTGCGCAGAAAG TERM 1891 1701325 - 1701304 - T 100 -13 -5.47159 | opp_overlap 1701304 TCTGAATACAAAAAA TGGGCGCC GAGGCA GGCGCCCA TTTTTGCGCAGAAAG YPA_1517 1701991 - 1701344 - | nicotinamidase/pyrazinamidase ansA 1703022 - 1702006 - | cytoplasmic asparaginase I TERM 1892 1703110 - 1703089 - R 100 -14.5 -4.7497 | opp_overlap 1703083 1703080 CTCAGCGAGGAAAAA CAGCCCGAT GGGT ATCGGGCTG AATATCTATCTGTAT YPA_1519 1704989 - 1703139 - | protease 4 YPA_1520 1705152 - 1705703 + | hypothetical protein TERM 1893 1706118 - 1706130 + G 86 -3.4 -5.61596 | ACGGTGTTGGCATTA TCAG CACGA CTGA TTTTTTTATGCCGAT YPA_1521 1705928 - 1706974 + | selenophosphate synthetase YPA_1522 1707033 - 1708961 + | DNA topoisomerase III YPA_1523 1708958 - 1709248 + | hypothetical protein YPA_1524 1709647 - 1709261 - | pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YPA_1525 1710551 - 1709745 - | exonuclease III TERM 1894 1710326 - 1710338 + g 77 -9.1 -4.015 | GGAAACCTCGGCGCA CAGCC AGT GGCTG TTCTTTCGTCAATAG TERM 1895 1710404 - 1710392 - G 73 -3.3 -5.0538 | GCCCATGGTAAAAAA CGTGG TAA CCATG CTGGCTGACGTCTTC TERM 1896 1711514 - 1711502 - g 86 -6.3 -5.17054 | ATAATAGGGAAAAAA CTCTT TAA AAGAG AGAAATTTGGCATGA YPA_1526 1711361 - 1712221 + | LysR family transcriptional regulator TERM 1897 1714275 - 1714296 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_1528 1713093 - 1714301 + | transposase for the IS285 insertion element purU 1715133 - 1714264 - | formyltetrahydrofolate deformylase YPA_1530 1715681 - 1715217 - | hypothetical protein TERM 1898 1716210 - 1716230 + H 95 -7.6 -4.9138 | opp_overlap 1716212 AATGTTTACGCTGAA TAGCCACC TTTAT GGTGGTTA TTTTGTTTGCGTACT YPA_1531 1717015 - 1718031 + | response regulator of RpoS YPA_1532 1718338 - 1719684 + | putative nucleotide sugar dehydrogenase TERM 1899 1720086 - 1720063 - T 100 -15.4 -5.88197 | opp_overlap 1720063 TGAAAGACAAAAAAA CACCCTCCTA TTAA TAGGAGGGTG TTTCGATAGTAATAG TERM 1900 1720063 - 1720086 + T 100 -15.4 -3.69323 | opp_overlap 1720063 TGAAAGACAAAAAAA CACCCTCCTA TTAA TAGGAGGGTG TTTCGATAGTAATAG YPA_1533 1720517 - 1720119 - | global DNA-binding transcriptional dual regulator H-NS YPA_1534 1721267 - 1721857 + | thymidine kinase YPA_1535 1723005 - 1722226 - | transposase/IS protein TERM 1901 1722924 - 1722938 + g 77 -11.4 -3.3506 | overlap 1722937 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1536 1724027 - 1723005 - | transposase for insertion sequence IS100 TERM 1902 1724049 - 1724031 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 1903 1724476 - 1724517 + r 86 -6 -5.27477 | gap 2, opp_overlap 1724482, overlap 1724477 1724482 TAATTGGTCTGTAAA AGA-A-AACCCCCGATCAGC GGCT GCTCATCGGGGGTTATATCA TTTTTTGCTTACCCT TERM 1904 1724477 - 1724516 + r 81 -9.5 -3.75402 | gap 2, opp_overlap 1724482, overlap 1724476 1724482 AATTGGTCTGTAAAA GA-A-AACCCCCGATCAGC GGCT GCTCATCGGGGGTTATATC ATTTTTTGCTTACCC TERM 1905 1724482 - 1724509 + r 100 -15.6 -3.74447 | opp_overlap 1724482, overlap 1724477 1724476 GTCTGTAAAAGAAAA CCCCCGATCAGC GGCT GCTCATCGGGGG TTATATCATTTTTTG TERM 1906 1724509 - 1724482 - R 100 -15.6 -5.07652 | opp_overlap 1724477 1724476 1724482 GTCTGTAAAAGAAAA CCCCCGATCAGC GGCT GCTCATCGGGGG TTATATCATTTTTTG YPA_1537 1727242 - 1724567 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 1907 1725451 - 1725486 + g 77 -9.1 -4.10007 | opp_overlap 1725462, overlap 1725462 AACCGGTACCTGATG TGGTTGTAATAGCGA CCAATT TCGCTTTTACACCCA TTTTCGGGAACTTAT TERM 1908 1726764 - 1726798 + g 83 -8.7 -4.33621 | gap 2, opp_overlap 1726750 1726749, overlap 1726793 TCCGCTGGCGCACCT GCTGC-GATAGCG-GCT TGA AGCACGATATCCGCAGC TTTATTGGTTGCGTC TERM 1909 1728009 - 1728019 + H 74 -4 -5.08088 | overlap 1728003 GTTATAATGCACTGT TATC GGT GATA TTTTTATTAGCAATT YPA_1538 1728049 - 1728693 + | hypothetical protein TERM 1910 1728714 - 1728749 + F 80 -2.6 -5.49809 | gap 1, overlap 1728715 ACCATTCAGAATTTT CGAG-AGGCCACTGA ACTATTC TTGGTGGCCTTCTCC TTTTTTTCCGCTTTG TERM 1911 1729119 - 1729106 - f 73 -2.5 -5.24531 | ATTCTGCATAAAAAA TATTT TAGT AAATA AATTCAATATGTTAT YPA_1539 1729531 - 1731168 + | periplasmic oligopeptide-binding protein precursor oppB 1731255 - 1732175 + | oligopeptide transporter permease YPA_1541 1732194 - 1733099 + | oligopeptide transport system permease protein TERM 1912 1733572 - 1733562 - g 70 -3.2 -4.7497 | TTGATGCAGTAAAAA TGCC CGA AGCA CGTAAACGTATGCGC oppD 1733111 - 1734112 + | oligopeptide transporter ATP-binding component TERM 1913 1735071 - 1735081 + G 70 -8.2 -3.794 | ATTAGAAGGGAGTTT CCGC CAC GCGG TTTCGTGCCTTAAAG YPA_1543 1734109 - 1735110 + | oligopeptide transport ATP-binding protein TERM 1914 1735571 - 1735587 + F 77 -4.5 -5.05228 | opp_overlap 1735534 1735571 1735566 ATTGACGAATTAAAA CATATTA AGT TAATGTG TTTTTGTCATTTAAT YPA_1544 1735671 - 1735886 + | hypothetical protein TERM 1915 1735978 - 1736011 + T 100 -16.9 -3.80114 | overlap 1735979 GAGCTGCTCTTGCTC ACCTCAGTCACTTAG TTAT CTAAGTGACTGAGGA TTTACTCGATTGCTG TERM 1916 1735979 - 1736010 + T 100 -20.4 -2.87586 | overlap 1735978 AGCTGCTCTTGCTCA CCTCAGTCACTTAG TTAT CTAAGTGACTGAGG ATTTACTCGATTGCT TERM 1917 1736127 - 1736159 + T 71 -9.1 -3.31416 | opp_overlap 1736126 1736128, overlap 1736130 AAGGATAATTAAGAT ACATTGCCCCGGGGT TGA ACTATGGGGCAATGA TTAACTCTTTATTTT TERM 1918 1736130 - 1736156 + T 70 -9.4 -2.8084 | opp_overlap 1736128 1736126, overlap 1736127 GATAATTAAGATACA TTGCCCCGGGGT TGA ACTATGGGGCAA TGATTAACTCTTTAT YPA_1545 1736538 - 1736185 - | dsDNA-mimic protein cls 1738133 - 1736673 - | cardiolipin synthetase TERM 1919 1738351 - 1738377 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 1738340, overlap 1738346 1738352 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1920 1738352 - 1738378 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 1738340, overlap 1738346 1738351 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1921 1738773 - 1738789 + H 100 -8.7 -5.48213 | opp_overlap 1738772 1738775 ATTATGGTAATAAGG CAGTCTC TAT GAGGCTG TTTTTGTTTTGAATC YPA_1547 1739180 - 1739719 + | attachment invasion locus protein precursor YPA_1548 1739694 - 1739822 + | hypothetical protein YPA_1549 1739940 - 1740203 + | hypothetical protein TERM 1922 1740286 - 1740247 - T 100 -11 -6.15536 | opp_overlap 1740249 1740251 1740254 1740257, overlap 1740248 1740249 AATTAACAAAAAAAA CTTATAATAATACGCCTA GCTT TAGGCGTATTATTATATC TAGTGTCTACAACCG TERM 1923 1740285 - 1740248 - T 100 -14.5 -4.25661 | opp_overlap 1740249 1740251 1740254 1740257, overlap 1740247 1740249 ATTAACAAAAAAAAC TTATAATAATACGCCTA GCTT TAGGCGTATTATTATAT CTAGTGTCTACAACC TERM 1924 1740284 - 1740249 - T 100 -18 -3.12957 | opp_overlap 1740249 1740251 1740254 1740257, overlap 1740248 1740247 TTAACAAAAAAAACT TATAATAATACGCCTA GCTT TAGGCGTATTATTATA TCTAGTGTCTACAAC TERM 1925 1740249 - 1740284 + T 100 -18 -2.88999 | opp_overlap 1740249 1740248 1740247, overlap 1740251 1740254 1740257 TTAACAAAAAAAACT TATAATAATACGCCTA GCTT TAGGCGTATTATTATA TCTAGTGTCTACAAC TERM 1926 1740251 - 1740282 + T 100 -16.2 -2.99545 | opp_overlap 1740249 1740248 1740247, overlap 1740249 1740254 1740257 AACAAAAAAAACTTA TAATAATACGCCTA GCTT TAGGCGTATTATTA TATCTAGTGTCTACA TERM 1927 1740254 - 1740279 + T 100 -13.5 -3.63762 | opp_overlap 1740249 1740248 1740247, overlap 1740251 1740249 1740257 AAAAAAAACTTATAA TAATACGCCTA GCTT TAGGCGTATTA TTATATCTAGTGTCT TERM 1928 1740257 - 1740276 + T 90 -10.8 -3.94067 | opp_overlap 1740249 1740248 1740247, overlap 1740254 1740251 1740249 AAAAACTTATAATAA TACGCCTA GCTT TAGGCGTA TTATTATATCTAGTG YPA_1550 1740564 - 1740319 - | hypothetical protein YPA_1551 1741083 - 1740787 - | YciI-like protein YPA_1552 1741384 - 1742142 + | transport protein TonB TERM 1929 1742204 - 1742183 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_1553 1743386 - 1742178 - | transposase for the IS285 insertion element TERM 1930 1743487 - 1743504 + r 100 -14.1 -4.12603 | CTGTCACCAACCTCA GGGCCGC TTTT GCGGCCC TTCTTGTTTGATCAA YPA_1554 1743983 - 1743534 - | acyl-CoA thioester hydrolase YPA_1555 1744605 - 1744063 - | intracellular septation protein A YPA_1556 1744836 - 1745918 + | hypothetical protein YPA_1557 1745950 - 1746570 + | sulfate permease family protein TERM 1931 1746616 - 1746638 + T 100 -16.4 -4.68593 | TGTCTACAGTTTGAA CGCCTGATGT AAT ACATCAGGCG TTTTTGAATGATACA YPA_1558 1747461 - 1746691 - | hypothetical protein YPA_1559 1747623 - 1747838 + | hypothetical protein TERM 1932 1747889 - 1747869 - f 73 -8.4 -3.57715 | AAAAGATACGAAAGA TGTGATCT CGATT AGATCACA AATACTCATTTGTAG TERM 1933 1747940 - 1747892 - f 100 -13.6 -4.03078 | gap 1, overlap 1747894 1747895 CGATTAGATCACAAA TACTCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATG-GAA TGGATAATGAAAAAA TERM 1934 1747938 - 1747894 - f 100 -16.2 -3.60505 | gap 1, overlap 1747892 1747895 ATTAGATCACAAATA CTCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATG-G AATGGATAATGAAAA TERM 1935 1747938 - 1747895 - f 100 -16.4 -2.7558 | overlap 1747894 1747892 TTAGATCACAAATAC TCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATGG AATGGATAATGAAAA YPA_1560 1747935 - 1748582 + | outer membrane protein W TERM 1936 1748692 - 1748724 + T 89 -7 -5.30155 | gap 1, opp_overlap 1748698, overlap 1748696 1748698 CATCAGTTAGGCGGG CAGTAAGGAGGTGCG GTTA TGCGCCTCC-TCCTG TTTTTTACTTAATCA TERM 1937 1748698 - 1748719 + T 74 -10.1 -3.11487 | opp_overlap 1748698, overlap 1748696 1748692 TTAGGCGGGCAGTAA GGAGGTGCG GTTA TGCGCCTCC TCCTGTTTTTTACTT YPA_1561 1749043 - 1748729 - | putative lipoprotein YPA_1562 1749372 - 1749223 - | hypothetical protein TERM 1938 1749297 - 1749265 - G 74 -7.8 -4.13343 | overlap 1749267 AGAAATGGCTGAAAA TAGCGCCTGTTT CATGTAAAC AAACAGGCGCTG AAGGGCGGTAATGAC TERM 1939 1749295 - 1749267 - G 80 -10.4 -3.65832 | overlap 1749265 AAATGGCTGAAAATA GCGCCTGTTT CATGTAAAC AAACAGGCGC TGAAGGGCGGTAATG TERM 1940 1749392 - 1749403 + r 72 -7.2 -3.91196 | opp_overlap 1749389 AAATAATAACTAGCT GCGG GTTG CCGC TTTCATCTCTGTGAC trpA 1750192 - 1749386 - | tryptophan synthase subunit alpha TERM 1941 1749512 - 1749529 + g 79 -8.3 -4.4078 | opp_overlap 1749501 1749504 AATAGCACCCGCCGC GCCCGCC GCCA GGCTGGC TTTTACTTGCGCGGG YPA_1564 1751382 - 1750192 - | tryptophan synthase subunit beta YPA_1565 1752966 - 1751539 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 1753968 - 1752970 - | anthranilate phosphoribosyltransferase TERM 1942 1753144 - 1753162 + g 73 -5.2 -4.63932 | opp_overlap 1753144 TTTACCTTGTAACAA CCGTGCTA AAA TGTCACGG TTTTCTTCCGGCATA TERM 1943 1753895 - 1753913 + g 71 -5.3 -4.46854 | gap 1 TCACCACGTACAATC GCC-GCAA ACAG TTGCTGGC TTTCTTCTTGGCTCA YPA_1567 1754561 - 1753983 - | anthranilate synthase component II YPA_1568 1756126 - 1754561 - | anthranilate synthase component I TERM 1944 1756202 - 1756188 - H 100 -11.4 -5.64274 | CTATCCATAAAAAAA CCCGCT ATT AGCGGG CTGAAGCAATCTGCA YPA_1569 1756542 - 1757477 + | hypothetical protein YPA_1570 1757494 - 1758114 + | hypothetical protein TERM 1945 1758293 - 1758278 - f 83 -9 -4.16681 | AATATTAGTGTAAAA TGTCCG GCCA CGGACA AGTGTGTGTGCCAGT TERM 1946 1759210 - 1759188 - g 70 -9 -3.55801 | ATTAATTTGCCGAAA GGCCTGCCAC GGG GTGGCTGGAC TGAACTGGATCTTAA YPA_1571 1758444 - 1759478 + | 23S rRNA pseudouridylate synthase B TERM 1947 1759543 - 1759580 + T 75 -5.7 -4.63542 | gap 1, opp_overlap 1759543 1759544, overlap 1759547 TAGCGACGTGAATAA TGCTTATTGCCGCAGTTT TTT GGACTGCGGCAATAT-TA TTTTTAACGCTTATA TERM 1948 1759547 - 1759577 + T 100 -15.6 -4.42235 | opp_overlap 1759543 1759544, overlap 1759543 GACGTGAATAATGCT TATTGCCGCAGTTT TTT GGACTGCGGCAATA TTATTTTTAACGCTT YPA_1572 1760245 - 1759601 - | cob(I)yrinic acid a,c-diamide adenosyltransferase YPA_1573 1760969 - 1760208 - | short chain dehydrogenase TERM 1949 1760352 - 1760365 + gH 76 -8.1 -4.21439 | overlap 1760360 ATCTTCATCGGGGAA TGCGG TCGC CCGCA TTTGTGTTCGGGTTC TERM 1950 1761479 - 1761514 + G 85 -12.8 -3.67 | gap 1, overlap 1761477 1761483 AGGGAGCATTGGGGC GCAGGAGGTCTCTTCAT TAC GTGAAGAGATCTC-TGC TATTTTGGCCGTTGC TERM 1951 1761483 - 1761511 + G 80 -13.3 -2.93891 | overlap 1761479 1761477 AGCATTGGGGCGCAG GAGGTCTCTTCAT TAC GTGAAGAGATCTC TGCTATTTTGGCCGT TERM 1952 1761664 - 1761676 + G 77 -10.5 -3.54951 | opp_overlap 1761661, overlap 1761675 CGGTTGATAAAGTTG CCGCC AGT GGCGG TTATATGATGGCCTG YPA_1574 1761156 - 1762187 + | putative periplasmic protease TERM 1953 1762250 - 1762219 - Tf 73 -7.3 -4.18488 | opp_overlap 1762219 1762220, overlap 1762220 AGTGATGGCAATAAA TGCAGGGGGTA ATCTGAACGG TACCCCCTGCT ATTTGCTACCAACCC TERM 1954 1762249 - 1762220 - Tf 79 -10.8 -3.10611 | opp_overlap 1762220 1762219, overlap 1762219 GTGATGGCAATAAAT GCAGGGGGTA ATCTGAACGG TACCCCCTGC TATTTGCTACCAACC TERM 1955 1762220 - 1762249 + TF 83 -10.8 -3.44848 | gap 1, opp_overlap 1762219 1762220, overlap 1762219 GTGATGGCAATAAAT GCAGGGGGTAATC TGAAC GGT-ACCCCCTGC TATTTGCTACCAACC YPA_1575 1762557 - 1762306 - | hypothetical protein YPA_1576 1762542 - 1762949 + | hypothetical protein TERM 1956 1762953 - 1762939 - fH 80 -5 -5.13344 | overlap 1762940 ACAGCAAGATAAAAA CCTTCT TTT AGAAGA AATAATTTAGGTAAA TERM 1957 1763201 - 1763185 - g 76 -6.5 -4.55446 | GAAGAAAGACGAAAA GGTTGCC TTA GTCAACC GTATGGGGGTCGATC TERM 1958 1763915 - 1763904 - g 87 -4.4 -5.40072 | TTGGTGTGAAAAAAA CCAT GATG ATGG CACAGCGCCTGTATG YPA_1577 1762976 - 1765591 + | DNA topoisomerase I TERM 1959 1765652 - 1765668 + F 100 -9.4 -5.46657 | opp_overlap 1765652 1765651 CTGACCTCGGTAAAG CCAGCC TTCGC GGCTGG TTTTTTATTGGGCTA cysB 1765988 - 1766962 + | transcriptional regulator CysB YPA_1579 1767298 - 1768155 + | hypothetical protein TERM 1960 1768591 - 1768609 + G 77 -11.7 -3.11768 | opp_overlap 1768589 TATTACTACTACAGC CTGCCGC AATTG GCGGCAG TGTTGGGTGATATCA YPA_1580 1768519 - 1771191 + | aconitate hydratase TERM 1961 1771297 - 1771323 + T 91 -10.2 -4.16033 | opp_overlap 1771297 TTATCAGCCTCTAAA GGGTAGGTATAA TTA TTGAACCTACCC TTATTCTTATTTCGC ribA 1771957 - 1771355 - | GTP cyclohydrolase II TERM 1962 1771468 - 1771484 + g 70 -4.3 -4.70626 | overlap 1771480 1771483 TATTGATCCCCGCTT GGGTGAG GAT CTCGACC TTTTTAGGGTTGTTG TERM 1963 1771916 - 1771895 - G 72 -3.7 -4.77438 | opp_overlap 1771900, overlap 1771897 ACCGACCATTAAAAA GTCACCC CAAGGAGT GGGTAAC TTTGCTTCTGCTACA YPA_1582 1772165 - 1772320 + | hypothetical protein YPA_1583 1772451 - 1773212 + | phosphatidylglycerophosphatase B YPA_1584 1773381 - 1773692 + | hypothetical protein TERM 1964 1774324 - 1774314 - g 74 -2.4 -5.08824 | overlap 1774315 GGGTTACTGAAAAAA GCGG CAA CGGC GGATAAACAATGTGC YPA_1585 1773699 - 1774868 + | hypothetical protein TERM 1965 1774955 - 1774936 - T 71 -10 -2.63073 | opp_overlap 1774935 1774936, overlap 1774935 1774933 CTTTGCTAATAAGAT CGGGTGAA CGGG TCCACCCG GTTGTTAGCTGTTGT YPA_1586 1775289 - 1774990 - | hypothetical protein YPA_1587 1775758 - 1776495 + | orotidine 5'-phosphate decarboxylase YPA_1588 1776495 - 1776821 + | translation initiation factor Sui1 TERM 1966 1776852 - 1776889 + T 100 -14.5 -3.62859 | gap 1, opp_overlap 1776852 1776857, overlap 1776857 TTTTCCGCGCAGATA TAAAATACGGCGT-TGAT ATT GTCAAACGCCGTATTTTA TTTAGAACTTCTAAT TERM 1967 1776889 - 1776852 - T 95 -13.8 -2.87132 | gap 1, opp_overlap 1776852 1776857, overlap 1776857 TTTTCCGCGCAGATA TAAAATACGGCGT-TGA TATTG TCAAACGCCGTATTTTA TTTAGAACTTCTAAT TERM 1968 1776857 - 1776884 + T 100 -10 -4.88405 | gap 1, opp_overlap 1776852 1776857, overlap 1776852 CGCGCAGATATAAAA TACGGCGT-TGAT ATT GTCAAACGCCGTA TTTTATTTAGAACTT TERM 1969 1776884 - 1776857 - T 100 -9.3 -4.60797 | gap 1, opp_overlap 1776857 1776852, overlap 1776852 CGCGCAGATATAAAA TACGGCGT-TGA TATTG TCAAACGCCGTA TTTTATTTAGAACTT YPA_1589 1777274 - 1777059 - | lipoprotein araD 1777754 - 1778449 + | L-ribulose-5-phosphate 4-epimerase TERM 1970 1778471 - 1778492 + T 70 -5.1 -4.56597 | AACATAAATAATGAG CCCGTGT TCAGTCTT GCACGGG TTTTTCCAGCCAGAG YPA_1591 1778726 - 1778478 - | hypothetical protein YPA_1592 1779060 - 1779725 + | fructose-6-phosphate aldolase TERM 1971 1779811 - 1779781 - T 100 -13.5 -4.18506 | overlap 1779767 1779784 TGAGCGGTAAAAGAA TAACGCCCTATAA AATCA CTATAGGGCGTTA CGGTGTCACTAATTT TERM 1972 1779808 - 1779784 - T 93 -10.8 -4.20868 | overlap 1779767 1779781 GCGGTAAAAGAATAA CGCCCTATAA AATCA CTATAGGGCG TTACGGTGTCACTAA YPA_1593 1780171 - 1779842 - | hypothetical protein YPA_1594 1782206 - 1780140 - | putative carbon starvation protein A TERM 1973 1780396 - 1780406 + gr 73 -5.4 -4.74132 | opp_overlap 1780396 GCTTGAGCAAGGAAG CCAA TAC TTGG TTTTTCATGGAATAT TERM 1974 1780922 - 1780942 + gr 70 -7.5 -3.89346 | overlap 1780924 1780925 AGTTTTCACCAACAT CTTTGGCGA CCA TCGCCAGTG TTTCTGGCGTAACGA TERM 1975 1780924 - 1780940 + gr 73 -8.7 -3.53733 | overlap 1780922 1780925 TTTTCACCAACATCT TTGGCGA CCA TCGCCAG TGTTTCTGGCGTAAC TERM 1976 1780925 - 1780939 + gr 71 -10 -2.71918 | overlap 1780924 1780922 TTTCACCAACATCTT TGGCGA CCA TCGCCA GTGTTTCTGGCGTAA TERM 1977 1782502 - 1782537 + r 71 -9.6 -3.03124 | opp_overlap 1782507, overlap 1782507 GCAAACATAACATTA AAAAAGCCGTCGGGGG AATT CCTCCGACGGCTATCA TGTTAAAACATAAGA TERM 1978 1782507 - 1782532 + r 100 -18.3 -2.9155 | opp_overlap 1782507, overlap 1782502 CATAACATTAAAAAA GCCGTCGGGGG AATT CCTCCGACGGC TATCATGTTAAAACA TERM 1979 1782532 - 1782507 - R 100 -16.1 -5.30189 | opp_overlap 1782507 1782502 CATAACATTAAAAAA GCCGTCGGGGG AATT CCTCCGACGGC TATCATGTTAAAACA YPA_1595 1784490 - 1782556 - | exoribonuclease II TERM 1980 1784065 - 1784076 + g 76 -7.2 -4.2828 | opp_overlap 1784065 TAGGTCAGCCTGAAA GGCG CGGT CGCC TTTTAATGGGTGGCG TERM 1981 1784258 - 1784248 - G 70 -3.2 -4.86033 | AAAGCGGGATAAAAA TGGC TCA ACCA ATGTTTCAGGTTCAG TERM 1982 1785234 - 1785205 - g 86 -6.5 -4.95547 | gap 1, opp_overlap 1785208 1785222, overlap 1785208 GTTACAAGAAGAAAA TAATGCC-TACCGT AAA ACGGTATGGCATCT CTTGCCGCTACTGAT TERM 1983 1785208 - 1785231 + G 71 -10.4 -3.08073 | gap 1, opp_overlap 1785205 1785208, overlap 1785222 ACAAGAAGAAAATAA TGCC-TACCGT AAA ACGGTATGGCA TCTCTTGCCGCTACT TERM 1984 1785231 - 1785208 - g 91 -10.4 -4.55653 | gap 1, opp_overlap 1785208 1785222, overlap 1785205 ACAAGAAGAAAATAA TGCC-TACCGT AAA ACGGTATGGCA TCTCTTGCCGCTACT YPA_1596 1785149 - 1786459 + | putative integral membrane protein TERM 1985 1786977 - 1786959 - g 70 -4.6 -4.66609 | opp_overlap 1786959 1786963 TATGGTACGCAAAAA GCATTAAA CGA TTTATTGC TGTCTGATTACAGCC YPA_1597 1786497 - 1787495 + | hypothetical protein YPA_1598 1788319 - 1787678 - | endonuclease III TERM 1986 1788285 - 1788304 + g 85 -3.5 -5.48514 | TTGTTATCCCGCAGA CGGGTCA AAATAG TGACACG TTTTTCTTTATTCAT YPA_1599 1789017 - 1788316 - | SoxR-reducing system protein RsxE TERM 1987 1788894 - 1788873 - G 70 -8.7 -3.59202 | TATTGGTACACACAA GGACTAGCG TGGT CGCTAACCC CAGCCCCAATGCGTT TERM 1988 1788987 - 1789000 + g 70 -3.1 -4.75174 | TATTTTTCCACAACC CTTGT GCTA ACAGG TTTTTCGCTTCACTC YPA_1600 1789643 - 1789014 - | electron transport complex protein RnfG rnfD 1790747 - 1789653 - | electron transport complex protein RnfD TERM 1989 1791546 - 1791524 - g 90 -8.4 -5.03314 | overlap 1791526 CGTACCTTTAAAAAA CGGTTTGGCG TGA CACCAAACAG CTTCCGCCAGATGAA YPA_1602 1791236 - 1792129 + | AraC family transcriptional regulator YPA_1603 1794096 - 1792234 - | electron transport complex protein RnfC TERM 1990 1793097 - 1793127 + g 77 -9.8 -3.6682 | opp_overlap 1793092 CCCCCATAATCACCA TTGGCGGGTTTTGA GGC TTGAAACCGGCCAA TTTAAGTAAATACAG TERM 1991 1793721 - 1793733 + g 70 -9.1 -3.61398 | CGCGCTGGCGATAGT CAGCC CAC GGCTG TTGTTCACGCCAGCG YPA_1604 1794712 - 1794146 - | electron transport complex protein RnfB TERM 1992 1794474 - 1794493 + g 86 -9.2 -4.54301 | AGTTTCAGCATCACC TGCTCGCC ACCC GGCGCGCA TTTGTTGATTTTTTC YPA_1605 1795293 - 1794712 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 1993 1795346 - 1795321 - R 87 -5.4 -5.55855 | CCTAAAAAAATAAAA GCCGCCTATT ATCCAA AATTGACGGC CCGACGACAACAGAT YPA_1606 1795864 - 1795421 - | hypothetical protein TERM 1994 1795491 - 1795480 - G 80 -4.4 -5.1963 | overlap 1795482 TGTAAGGAACAAAAA TAGC TGCA GCTA GCAGCGGCCACCCGA TERM 1995 1795496 - 1795482 - G 71 -7.1 -4.21997 | overlap 1795480 TAAGGAACAAAAATA GCTGC AGCTA GCAGC GGCCACCCGAGTGTT YPA_1607 1796121 - 1795969 - | hypothetical protein TERM 1996 1797119 - 1797103 - gH 76 -10.9 -2.59793 | overlap 1797102 1797100 TGAGTTAGATAATAT CCGTGAT TTC ATCACGG GTTCGGCCCTGACAT TERM 1997 1797298 - 1797313 + GH 82 -7.5 -4.65895 | overlap 1797287 TCTCTGTGGTTTTGC CGCGC AAAACG GCGCG TTTTTGACTGAAACG YPA_1608 1796339 - 1798123 + | hypothetical protein YPA_1609 1798071 - 1798397 + | toxin ABC transporter ATP-binding/permease YPA_1610 1798422 - 1799423 + | hypothetical protein YPA_1611 1799399 - 1799791 + | RTX toxin ABC transporter YPA_1612 1799793 - 1801931 + | putative toxin transport protein TERM 1998 1802057 - 1802073 + T 70 -5.1 -4.49311 | opp_overlap 1802019 1802015, overlap 1802021 1802058 CAGGCCTCTGAGGGT GTCGCTA TCA TAGCGAA TTTTATAATACTGAT YPA_1613 1803623 - 1802121 - | L-arabinose isomerase YPA_1614 1805410 - 1803707 - | ribulokinase TERM 1999 1806064 - 1806022 - g 74 -6.8 -4.38712 | CCGATGGTGAGAAAA CCCTGAACGCCATCGACAGC CTG GCGGCCAGTGGTGCCCAAGG TTTTGTTATTTGTAC YPA_1615 1805817 - 1806800 + | L-arabinose-binding periplasmic protein precursor TERM 2000 1808062 - 1808049 - g 70 -8.1 -3.71848 | CTGTCTGATTAACAA CCGCT GGGA AGCGG ATAATGCGTTGCTGC araG 1806898 - 1808469 + | L-arabinose transporter ATP-binding protein araH 1808487 - 1809536 + | L-arabinose transporter permease protein YPA_1618 1809757 - 1810689 + | DNA-binding transcriptional regulator AraC TERM 2001 1811856 - 1811840 - g 80 -2.2 -5.49569 | GATCAACAGAAAAAA GCACTG CCGAT CATTGC TAAAAATTGATGTTT YPA_1619 1810817 - 1811866 + | putative oxidoreductase TERM 2002 1811911 - 1811938 + F 100 -7.8 -6.32976 | gap 1, opp_overlap 1811909 1811924 AGGGTGGAAATATCT CTCTGGG-CAC AATCTCC GTGGCCCAGAG TTTTTTTATTTTTTT TERM 2003 1812671 - 1812651 - g 90 -6.1 -5.27923 | opp_overlap 1812651, overlap 1812653 GAACGGCACAAAAAA CTGGTCAAT ATC ACTGACCGG TCATCTATTTTGTTG YPA_1620 1812060 - 1813088 + | hypothetical protein TERM 2004 1813444 - 1813432 - g 100 -4.8 -5.98781 | GATAATGAAAAAAAA CTGC ATATA GCAG AAATAGATAAAGGTA YPA_1621 1813294 - 1813893 + | hypothetical protein TERM 2005 1813919 - 1813890 - T 91 -13.7 -2.51657 | opp_overlap 1813896, overlap 1813896 AAAGAGAATAGAGAT TTAAAACGGAGCC AATG GGCTCCGTTTTTA TCAAACAAATATAAT TERM 2006 1813913 - 1813896 - T 100 -12.7 -4.27861 | opp_overlap 1813896, overlap 1813890 AATAGAGATTTAAAA CGGAGCC AATG GGCTCCG TTTTTATCAAACAAA TERM 2007 1813896 - 1813913 + T 100 -12.7 -4.82901 | opp_overlap 1813896 1813890 AATAGAGATTTAAAA CGGAGCC AATG GGCTCCG TTTTTATCAAACAAA YPA_1622 1815486 - 1813942 - | hypothetical protein TERM 2008 1814300 - 1814310 + g 79 -5.4 -5.00616 | ATTGGAATGCTCAGG TTGG CGT CCAA TTTTTTCACCGCGGG TERM 2009 1814385 - 1814403 + g 74 -7.4 -4.13748 | TCAGTTCGATATTCA GGGTAAAG GTA CTTTCCCC TTTAGTATTTTTCCA TERM 2010 1815599 - 1815586 - R 71 -3.1 -5.07107 | GAAATCCCCAAAAAA GAAGA TATA TCTCC CAAATAATATAGGCC YPA_1623 1816997 - 1815726 - | mannose-6-phosphate isomerase TERM 2011 1816544 - 1816563 + g 70 -2.8 -4.86731 | gap 1, overlap 1816547 TGCGCTCAGCCGCAT CCA-GTGGG ATA CCTGCCTGG TTTTCTTTAGCAAAA fumC 1817185 - 1818582 + | fumarate hydratase TERM 2012 1818605 - 1818625 + T 79 -6.8 -4.62783 | opp_overlap 1818605 ACATTGTTATATTAA CGCCGG GGTGGATTA CCGGCG TTTTTACAGTGGCTA YPA_1625 1819636 - 1818662 - | DNA replication terminus site-binding protein TERM 2013 1819007 - 1819020 + g 82 -3.7 -5.29782 | TGGAGGAACAGCTCG GCCAG CATT CAGGC TTTTTTCTAGCTGTA YPA_1626 1821100 - 1819982 - | hypothetical protein YPA_1627 1821313 - 1822191 + | putative transcriptional regulator LYSR-type TERM 2014 1822265 - 1822252 - f 87 -5.3 -5.47846 | overlap 1822259 AAGGAAAAAAGAAAA CACAT GATT ATGTG CAGCAAATCACATAA YPA_1628 1822405 - 1823622 + | ROK family transcriptional regulatory protein TERM 2015 1823657 - 1823633 - f 75 -10.3 -2.84602 | opp_overlap 1823637 1823640, overlap 1823632 1823640 GCTAGTGTATTAAAT CTAATAATTAA GAG TTAATTATTAG TGGGTACCTTCGGTC YPA_1629 1823846 - 1824514 + | putative dethiobiotin synthetase YPA_1630 1826287 - 1825265 - | LacI family transcriptional regulatory protein YPA_1631 1826108 - 1826320 + | ABC transporter, perplasmic taurine/sulfonate binding protein YPA_1632 1827143 - 1826364 - | transposase/IS protein TERM 2016 1827062 - 1827076 + g 77 -11.4 -3.3506 | overlap 1827075 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1633 1828165 - 1827143 - | transposase for insertion sequence IS100 TERM 2017 1828187 - 1828169 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 2018 1828376 - 1828355 - g 75 -8.7 -3.93583 | GAAGCCATGTATAAA GAGAAGCCA GAGG TGGCTGCTC GCGTACTTAAACTGT YPA_1634 1828235 - 1828672 + | hypothetical protein TERM 2019 1829081 - 1829101 + G 95 -2.3 -5.86965 | overlap 1829082 GCGATGCTGTGGTTC GGCCTGGGG AAT CCGCCGGCA TTTTTTTTGATAAGT YPA_1635 1828676 - 1829497 + | putative transport system permease TERM 2020 1829632 - 1829644 + GT 72 -6.3 -4.29493 | AATAAATCTTCATAT TTCAC ATG GTGAA TTTGTCTGTTTACTG YPA_1637 1831446 - 1829788 - | AMP nucleosidase YPA_1636 1829507 - 1830061 + | taurine ATP-binding component of a transport system TERM 2021 1830595 - 1830621 + gF 73 -3 -5.00616 | overlap 1830597 CTGCCCATTTTTGGC TATCAGGTGATA GGC TGGCATCTGATG TTTTTTCCACGCCAG TERM 2022 1830944 - 1830962 + gF 100 -11.8 -4.09243 | ATCGTTTCAATTCCG TCGGTGAT GCC ATCACCGA TTTTAGCCAGATCTG TERM 2023 1831972 - 1831952 - g 72 -3.9 -4.77925 | overlap 1831953 AAAAAATCGGAAAAA GCCGCACAA CAG TTGTTCGGG GCATTACTCGCGAAA TERM 2024 1832213 - 1832199 - g 73 -5.6 -4.62904 | opp_overlap 1832206 AAATACGGGCAAAAA CGGTTG TCA CACCCG CAGCGGTTGAGTTAT YPA_1638 1831634 - 1833067 + | putative virulence factor TERM 2025 1833130 - 1833142 + G 79 -7.7 -4.54727 | overlap 1833117 TTCAGGATAGTGGGA TCCAG TTC CTGGA TTTTGCTTTAACGCC TERM 2026 1833262 - 1833282 + G 76 -11.1 -3.30243 | AATATTCACTGATGC TCCCAGGGG CAG CCCCTGAGA TTGTGAAACCTGAAT YPA_1639 1833072 - 1836143 + | putative virulence factor TERM 2027 1836643 - 1836669 + G 75 -9.4 -3.82604 | CGCCCGTGCTTTCTT GCTGGATTGCCC TCA GGAAAATCCAGC TTATTCGTTGGATGA YPA_1640 1836140 - 1838680 + | putative virulence factor TERM 2028 1838752 - 1838726 - T 91 -7.9 -4.84017 | opp_overlap 1838726 AACGTGCCACAAAAA TGCGCAACTCC CCGAC GGAGAAGCGCA TTTTTTAAACAGCAG TERM 2029 1838726 - 1838752 + T 95 -7.9 -5.00616 | opp_overlap 1838726 AACGTGCCACAAAAA TGCGCAACTCC CCGAC GGAGAAGCGCA TTTTTTAAACAGCAG YPA_1641 1839643 - 1838849 - | putative lipoprotein TERM 2030 1840224 - 1840200 - H 100 -15 -3.6292 | gap 1, opp_overlap 1840200 AGAAAGATTCCCAAA CCCCGC-CGGC GCCA GCCGAGCGGGG TTTCTTTTTATCGCC TERM 2031 1840200 - 1840224 + H 100 -15 -4.96501 | gap 1, opp_overlap 1840200 AGAAAGATTCCCAAA CCCCGC-CGGC GCCA GCCGAGCGGGG TTTCTTTTTATCGCC TERM 2032 1841150 - 1841134 - g 77 -10.9 -3.59979 | TCGGGCCATCGGAAA GGCAGAA CAA TTCTGCC CTCATGCCAATATTA YPA_1642 1840280 - 1841947 + | acetolactate synthase catalytic subunit YPA_1643 1841949 - 1842251 + | acetolactate synthase 1 regulatory subunit TERM 2033 1842259 - 1842301 + T 100 -15 -3.65046 | opp_overlap 1842248 1842247 1842269, overlap 1842260 AAAGGTGACGTTGTC ACACGTTAAACCCTGTCG TTACTGC CGACAGGGTTTAACGGGC TTATTCGAGTAGGGA TERM 2034 1842260 - 1842300 + T 100 -18.5 -2.78813 | opp_overlap 1842247 1842269, overlap 1842259 AAGGTGACGTTGTCA CACGTTAAACCCTGTCG TTACTGC CGACAGGGTTTAACGGG CTTATTCGAGTAGGG TERM 2035 1842291 - 1842269 - T 82 -10.6 -3.63627 | opp_overlap 1842260 1842259 TTGTCACACGTTAAA CCCTGTCG TTACTGC CGACAGGG TTTAACGGGCTTATT YPA_1644 1842992 - 1842318 - | nucleotidase YPA_1645 1844508 - 1843123 - | hypothetical protein YPA_1646 1845518 - 1844508 - | hypothetical protein TERM 2036 1845636 - 1845620 - R 71 -8.7 -3.39908 | CTTTTTTAAAACAGA CTGCCGT AAC ACAGCAG AAAAACCCATTAATT TERM 2037 1846039 - 1846017 - R 100 -9.9 -4.96646 | gap 1 GGACATAAGCAAAAA TCCCGGC-CA TTAC TGCGCCGGGA CGTTCCAGTGAGATA YPA_1647 1847509 - 1846064 - | alkaline phosphatase YPA_1648 1847750 - 1848268 + | putative methylated-DNA--protein-cysteine methyltransferase YPA_1649 1848341 - 1849093 + | fumarate/nitrate reduction transcriptional regulator YPA_1650 1849228 - 1850184 + | universal stress protein UspE TERM 2038 1850245 - 1850222 - T 100 -13.2 -4.28049 | CGTAAAATCCTAAAA TAAGGGCCAC CGAA GTGGCCCTCA GACTGCTGACAAACC TERM 2039 1850331 - 1850305 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1850314, overlap 1850306 1850321 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2040 1850332 - 1850306 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1850314, overlap 1850305 1850321 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2041 1850431 - 1850404 - T 100 -15.6 -3.62046 | overlap 1850405 GCACTTTGTCAATAA CCTCAGGGCCAC CGAA GTGGCCCTGAGC AATACAATGGATGTT TERM 2042 1850430 - 1850405 - T 100 -19.1 -2.77013 | overlap 1850404 CACTTTGTCAATAAC CTCAGGGCCAC CGAA GTGGCCCTGAG CAATACAATGGATGT pntB 1851853 - 1850459 - | pyridine nucleotide transhydrogenase pntA 1853452 - 1851926 - | NAD(P) transhydrogenase subunit alpha TERM 2043 1852399 - 1852424 + g 76 -3.2 -5.19879 | CGCGAATCACGGTAT CGTCGAAATC AATATC GATCTCGCCG TTTTTCTCTTTGCAA YPA_1653 1853982 - 1854935 + | hypothetical protein TERM 2044 1854942 - 1854966 + F 82 -7.8 -4.4727 | overlap 1854945 TTCAAATAATTATCT TAAGGGCGGC CAAGT GCTGCCCTTC TTTTATCCGTGTTGC TERM 2045 1854945 - 1854963 + F 88 -9.5 -4.33785 | overlap 1854942 AAATAATTATCTTAA GGGCGGC CAAGT GCTGCCC TTCTTTTATCCGTGT TERM 2046 1855743 - 1855761 + G 80 -10.4 -3.68619 | GCATCGCATTTAGCC TCGATACT TTT AGTATCGA TTTCACTGGCTTAGC YPA_1654 1855205 - 1856596 + | putative amino acid antiporter YPA_1655 1857036 - 1856620 - | hypothetical protein TERM 2047 1856845 - 1856867 + g 82 -12 -3.646 | opp_overlap 1856832, overlap 1856846 TACTTGCAGCGCCAA TGCCGTAAGC TGA GCTTGCGGCG TTCTCTCTAATTCAG TERM 2048 1856846 - 1856866 + g 79 -13.3 -2.78278 | opp_overlap 1856832, overlap 1856845 ACTTGCAGCGCCAAT GCCGTAAGC TGA GCTTGCGGC GTTCTCTCTAATTCA YPA_1656 1857333 - 1858079 + | DNA-binding transcriptional regulator RstA YPA_1657 1858107 - 1859384 + | sensor protein RstB YPA_1658 1859478 - 1860977 + | putative carboxypeptidase TERM 2049 1861021 - 1860997 - T 100 -9.9 -4.43877 | opp_overlap 1861000, overlap 1860999 1861000 TAATTCGGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2050 1861019 - 1860999 - T 100 -12.5 -3.81958 | opp_overlap 1861000, overlap 1860997 1861000 ATTCGGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2051 1861000 - 1861018 + T 100 -16 -4.8048 | opp_overlap 1860999 1860997 1861000 TTCGGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2052 1861018 - 1861000 - T 100 -16 -2.88452 | opp_overlap 1861000, overlap 1860999 1860997 TTCGGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_1659 1861557 - 1861099 - | transposase for the IS1541 insertion element TERM 2053 1861670 - 1861688 + H 100 -16 -4.37092 | opp_overlap 1861670 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2054 1861688 - 1861670 - H 100 -16 -3.07307 | opp_overlap 1861670 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2055 1863029 - 1863017 - g 76 -4.7 -5.03314 | CTGACGCGGAAAAAA GCCTG AAC CTGGC CGGCGCGTGCGTCAG TERM 2056 1864169 - 1864156 - g 78 -3.8 -5.1861 | CTGAGGAGTAAAAAA TCCG GCGATA CGGA AACGGAAGGCCTGCA TERM 2057 1864443 - 1864418 - g 73 -6.1 -4.47328 | AAGCGGATTACAAAA CCGTCCGCTAC TCTG GTAAGGAACGG GATGCGACGGGGTTG YPA_1660 1862527 - 1865151 + | putative insecticidal toxin complex YPA_1661 1865154 - 1865510 + | hypothetical protein TERM 2058 1865493 - 1865503 + T 75 -5.4 -4.78752 | ACTCCAGAACATAGT CCAA TTT TTGG TTTTTAAGTTGTAGT TERM 2059 1865569 - 1865538 - T 86 -10.4 -3.79043 | opp_overlap 1865542, overlap 1865557 CATTACTAACCGAAA GATAGTTATATTCA GAAA TGGATATAACTATC CTAAAAAATTCACAC YPA_1662 1865772 - 1865614 - | putative invertase protein TERM 2060 1865654 - 1865673 + g 70 -4.2 -4.65895 | gap 1, opp_overlap 1865654 GCTTCCATAACGAGA CGCG-CCTG TTT TGGGTCGCG TTTTTGCATGACCAA TERM 2061 1866044 - 1866031 - R 74 -8.1 -3.95435 | GGGGTTAAAATATAA GTGGC GTAA GCCAC CGGAGCGCCCCGAGG TERM 2062 1866134 - 1866107 - R 78 -9.2 -3.61715 | opp_overlap 1866114, overlap 1866094 1866108 1866114 TAGCTTTTTCAATAA CCTCAAAGGAGC CAAA GCTCCTTTCAGA CTGCTGACAAACCCC TERM 2063 1866133 - 1866108 - R 75 -10.5 -2.76815 | opp_overlap 1866114, overlap 1866107 1866094 1866114 AGCTTTTTCAATAAC CTCAAAGGAGC CAAA GCTCCTTTCAG ACTGCTGACAAACCC TERM 2064 1866114 - 1866127 + r 70 -8.1 -3.58343 | opp_overlap 1866108 1866107 1866094 1866114 TTCAATAACCTCAAA GGAGC CAAA GCTCC TTTCAGACTGCTGAC TERM 2065 1866127 - 1866114 - R 70 -8.1 -3.72051 | opp_overlap 1866114, overlap 1866108 1866107 1866094 TTCAATAACCTCAAA GGAGC CAAA GCTCC TTTCAGACTGCTGAC TERM 2066 1866218 - 1866192 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 1866201, overlap 1866193 1866208 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2067 1866219 - 1866193 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 1866201, overlap 1866192 1866208 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2068 1866299 - 1866312 + r 95 -8.1 -5.10208 | opp_overlap 1866299 GTCAATAACCTCAAA GGAGC CAAA GCTCC TTTTTGTTACCGTTG TERM 2069 1866312 - 1866299 - R 70 -8.1 -3.72051 | opp_overlap 1866299 GTCAATAACCTCAAA GGAGC CAAA GCTCC TTTTTGTTACCGTTG YPA_1663 1866800 - 1866294 - | hypothetical protein YPA_1664 1867380 - 1866826 - | hypothetical protein TERM 2070 1867953 - 1867938 - H 71 -8.2 -3.41051 | opp_overlap 1867937 CTACTCTGATTATAA CGACCC AACG GGGCCG GTATATGAATAGAAC YPA_1665 1867984 - 1868268 + | acid shock protein TERM 2071 1868336 - 1868353 + F 100 -12.7 -5.24531 | opp_overlap 1868336 1868338 AAATGATTCACTCAA CACCCGG TTCT CCGGGTG TTTTTTATCAGGAGT TERM 2072 1868353 - 1868336 - f 93 -12.7 -3.09208 | opp_overlap 1868336, overlap 1868338 AAATGATTCACTCAA CACCCGG TTCT CCGGGTG TTTTTTATCAGGAGT TERM 2073 1868351 - 1868338 - f 72 -9.5 -3.10056 | opp_overlap 1868336, overlap 1868336 ATGATTCACTCAACA CCCGG TTCT CCGGG TGTTTTTTATCAGGA YPA_1666 1868602 - 1869438 + | putative pepetidase YPA_1667 1869817 - 1869494 - | putative DNA-binding phage-related protein TERM 2074 1870472 - 1870432 - R 100 -8.4 -5.48514 | gap 1, overlap 1870435 ACTAAGAAATAAAAA GAATTCGACGCCTAAGTCT AGAT AG-CTCAGGCGTCGAATAG GGGCATCAATCAGAC TERM 2075 1870469 - 1870435 - R 100 -14.5 -4.78345 | gap 1, overlap 1870432 AAGAAATAAAAAGAA TTCGACGCCTAAGTCT AGAT AG-CTCAGGCGTCGAA TAGGGGCATCAATCA YPA_1668 1872485 - 1870482 - | ATP-dependent helicase TERM 2076 1872025 - 1872038 + g 76 -8.1 -4.19624 | opp_overlap 1872023 1872025 TCATCGACCAGAATA TCCCG CCGA CGGGA TTTGTGTTCCAACTC TERM 2077 1872520 - 1872538 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1669 1872542 - 1873564 + | transposase for insertion sequence IS100 TERM 2078 1873645 - 1873631 - g 77 -11.4 -3.3506 | overlap 1873622 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1670 1873564 - 1874343 + | transposase/IS protein YPA_1671 1876328 - 1874394 - | ATP-dependent helicase HrpA TERM 2079 1876645 - 1876626 - H 72 -6.4 -4.3351 | overlap 1876628 ATAAAATCGAACAAA GAGCGCAA AATA TTGCGCTA TCACTGGTAGCAAAA TERM 2080 1876643 - 1876628 - H 78 -9 -3.75005 | overlap 1876626 AAAATCGAACAAAGA GCGCAA AATA TTGCGC TATCACTGGTAGCAA YPA_1672 1876729 - 1877334 + | azoreductase TERM 2081 1877433 - 1877450 + T 100 -14.1 -5.35222 | AGCCATGTGATGATT GCGCGCC AACC GGCGCGC TTTTTTATGCCTTTT YPA_1673 1878411 - 1877455 - | putative transcriptional regulatory protein TERM 2082 1878560 - 1878549 - H 70 -7.2 -3.86283 | TTAACCTACACGAAA GGGC AAAT GCCC AAATATTGAATTTAT TERM 2083 1879326 - 1879303 - g 73 -3.1 -5.00616 | gap 1, overlap 1879304 GGGTGTTGGAAAAAA CCGGTATCGT AGATA ACGCT-CCGG TGATGGGGGAATCAT YPA_1674 1878621 - 1880012 + | putative mannitol dehydrogenase YPA_1675 1880602 - 1880231 - | hypothetical protein YPA_1676 1880806 - 1880612 - | putative lipoprotein YPA_1677 1883499 - 1880803 - | hypothetical protein TERM 2084 1881137 - 1881123 - G 74 -11.4 -3.13908 | opp_overlap 1881120 AACGCAACCAGTCAA TCGCCG CAC CGGCGA CAGTATTGCTCTCAC YPA_1678 1883765 - 1884757 + | D-lactate dehydrogenase YPA_1679 1884827 - 1885279 + | heat-inducible protein YPA_1680 1885678 - 1885337 - | hypothetical protein YPA_1681 1885963 - 1886622 + | putative Mg(2+) transport ATPase YPA_1682 1887014 - 1886682 - | quaternary ammonium compound-resistance protein TERM 2085 1889939 - 1889954 + G 75 -10.4 -3.40403 | opp_overlap 1889937 CGCTGTTCGAATATT CCGGAG CCTG CTCCGG TTGTGGTGAAACACC YPA_1683 1887493 - 1891026 + | putative pyruvate-flavodoxin oxidoreductase TERM 2086 1891061 - 1891086 + F 100 -13.4 -5.18995 | TGTGCGATTTACTGA GCCAGTTAGC TAAACC GCTAACTGGC TTTTTCTATTATCTT TERM 2087 1891371 - 1891361 - g 86 -8.2 -4.64144 | overlap 1891363 AACAAGCTGCAAAAA CGGC TGC GCCG TAACGTCGGCCAAGC TERM 2088 1892217 - 1892204 - g 74 -2.3 -5.09685 | GAAGACACAGAAAAA CGTCC ACCA GTACG CCTTGATGTGTTGGA YPA_1684 1891301 - 1892242 + | C32 tRNA thiolase YPA_1685 1892513 - 1893517 + | hypothetical protein TERM 2089 1893520 - 1893543 + F 71 -8.8 -3.38991 | opp_overlap 1893521 1893523, overlap 1893518 1893523 TCATAGCCAGTAAAA ATAGTGGGCC AAAT GGCCCACTGA TGTTATTGGCAAAGT TERM 2090 1893542 - 1893521 - f 100 -10.1 -4.76041 | opp_overlap 1893520 1893518 1893523, overlap 1893523 CATAGCCAGTAAAAA TAGTGGGCC AAAT GGCCCACTG ATGTTATTGGCAAAG TERM 2091 1893523 - 1893540 + F 89 -12.7 -2.85545 | opp_overlap 1893523 1893521, overlap 1893520 1893518 TAGCCAGTAAAAATA GTGGGCC AAAT GGCCCAC TGATGTTATTGGCAA TERM 2092 1893540 - 1893523 - f 100 -12.7 -3.99327 | opp_overlap 1893520 1893518 1893523, overlap 1893521 TAGCCAGTAAAAATA GTGGGCC AAAT GGCCCAC TGATGTTATTGGCAA TERM 2093 1893634 - 1893660 + F 80 -8.7 -3.9749 | gap 1, overlap 1893634 CTTCCATGGGGGCTA G-ATCCGCGCCA CTAC TGGCGCGGACGC TTTACTCTTCTGCCT TERM 2094 1894030 - 1894016 - g 100 -7.2 -5.26875 | opp_overlap 1894016 TTTCTAATGAAAAAA TCAAGA GCA TCTTGA TGGATTACTCATCCC YPA_1686 1893829 - 1894668 + | putative regulatory protein TERM 2095 1894835 - 1894812 - T 100 -14 -5.60993 | CGGCGCACAAAAAAA TGCCGATGTT TTTC AACATCGGCA CCGTAACAATTAAAT zntB 1896046 - 1895033 - | zinc transporter TERM 2096 1896228 - 1896198 - R 93 -9 -4.54323 | opp_overlap 1896200, overlap 1896200 1896204 AAGGACAAGAATAAA TGCAAAGGCGGATT TAA AATCCGCCTCTGTT AATTAGTTAAAAACA TERM 2097 1896226 - 1896200 - R 100 -16 -2.57496 | opp_overlap 1896200, overlap 1896198 1896204 GGACAAGAATAAATG CAAAGGCGGATT TAA AATCCGCCTCTG TTAATTAGTTAAAAA TERM 2098 1896200 - 1896226 + r 100 -13.8 -3.45366 | opp_overlap 1896198 1896200 1896204 GGACAAGAATAAATG CAAAGGCGGATT TAA AATCCGCCTCTG TTAATTAGTTAAAAA TERM 2099 1896222 - 1896204 - R 100 -13.2 -3.95772 | opp_overlap 1896200, overlap 1896200 1896198 AAGAATAAATGCAAA GGCGGATT TAA AATCCGCC TCTGTTAATTAGTTA YPA_1688 1897875 - 1896259 - | putative periplasmic murein peptide-binding protein YPA_1689 1898253 - 1899023 + | murein peptide amidase A YPA_1690 1900039 - 1899065 - | putative mandelate racemase / muconate lactonizing protein TERM 2100 1900074 - 1900090 + H 71 -9.5 -2.98368 | overlap 1900073 ACAGTTTTAGCTTAG GTATGAG ACC CTCATAC GTTTATCCGTTAAGT TERM 2101 1900096 - 1900116 + H 70 -2.5 -5.01732 | overlap 1900097 ACCCTCATACGTTTA TCCGTTAAG TCT TTAAACGGG TTTTTTAGCGAACTT tpx 1900202 - 1900705 + | thiol peroxidase TERM 2102 1900805 - 1900781 - f 88 -10 -4.18494 | gap 1, opp_overlap 1900781 TATCGTGACTCAAAA CGGCTGC-CCC ACTC GGGTACAGCCG TTTTTTATTGTGCCC TERM 2103 1900781 - 1900805 + F 100 -7.8 -5.55769 | gap 1, opp_overlap 1900781 TATCGTGACTCAAAA CGGCTG-CCCC ACTC GGGTACAGCCG TTTTTTATTGTGCCC TERM 2104 1900827 - 1900845 + F 100 -16 -3.07307 | opp_overlap 1900827 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2105 1900845 - 1900827 - f 100 -16 -4.37092 | opp_overlap 1900827 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1692 1900958 - 1901416 + | transposase for the IS1541 insertion element TERM 2106 1901483 - 1901529 + T 95 -7.2 -5.5762 | opp_overlap 1901474 1901497, overlap 1901490 1901494 1901496 1901497 AACAGAGCCTTATAG GCGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTACTC TTTTTTATGTTTGAT TERM 2107 1901490 - 1901522 + T 100 -11.3 -4.20024 | opp_overlap 1901497, overlap 1901483 1901494 1901496 1901497 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTACTCTTTTTTAT TERM 2108 1901494 - 1901518 + T 100 -9.9 -4.60648 | opp_overlap 1901497, overlap 1901490 1901483 1901496 1901497 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTACTCTTTT TERM 2109 1901496 - 1901516 + T 100 -12.5 -3.88114 | opp_overlap 1901497, overlap 1901494 1901490 1901483 1901497 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTACTCTT TERM 2110 1901515 - 1901497 - T 100 -16 -4.8048 | opp_overlap 1901497 1901496 1901494 1901490 1901483 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTACTCT TERM 2111 1901497 - 1901515 + T 100 -16 -2.91241 | opp_overlap 1901497, overlap 1901496 1901494 1901490 1901483 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTACTCT YPA_1693 1903140 - 1901563 - | DNA-binding transcriptional regulator TyrR YPA_1694 1903475 - 1903921 + | hypothetical protein YPA_1695 1903983 - 1904441 + | hypothetical protein YPA_1696 1905512 - 1904451 - | hypothetical protein TERM 2112 1904872 - 1904890 + g 75 -8.8 -3.85817 | opp_overlap 1904866 1904865 ATCATCAACGCTGAT TCAGCAGC ATA GCGGCTGA TTTCTGCCCGAGCCT YPA_1697 1906906 - 1905509 - | hypothetical protein TERM 2113 1906609 - 1906578 - G 74 -7.3 -4.1899 | gap 1, opp_overlap 1906595 TCACTGGAGCGAAAA CGTAACGCCAGACG GATTT CG-CTGACGCCACG GGTCGGCGTTGGCCA YPA_1698 1907129 - 1906887 - | peripheral inner membrane phage-shock protein YPA_1699 1907573 - 1907214 - | DNA-binding transcriptional activator PspC TERM 2114 1907460 - 1907439 - G 76 -3.1 -5.09173 | gap 1, overlap 1907441 GAATAGGCCAAAAAA CAGTGATAAC ACC ATTATCAC-G CGAACCAACCGTACT TERM 2115 1907459 - 1907441 - G 71 -6.8 -4.16351 | overlap 1907439 ATAGGCCAAAAAACA GTGATAAC ACC ATTATCAC GCGAACCAACCGTAC TERM 2116 1907526 - 1907546 + g 83 -5.3 -5.1675 | overlap 1907534 CCCTTTGATCATGCC CTCTTCCGG TAC CCGGTACAG TTTTTTACTGCCTAA pspB 1907800 - 1907573 - | phage shock protein B YPA_1701 1908627 - 1907962 - | phage shock protein PspA pspF 1908872 - 1909900 + | phage shock protein operon transcriptional activator TERM 2117 1909991 - 1909959 - T 76 -7.7 -4.20696 | opp_overlap 1909966, overlap 1909947 1909963 1909965 1909966 GGACGAAGGGTAAAA TAAATATCCTCCGAC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2118 1909987 - 1909963 - T 77 -6.3 -4.68655 | opp_overlap 1909966, overlap 1909947 1909959 1909965 1909966 GAAGGGTAAAATAAA TATCCTCCGAC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2119 1909985 - 1909965 - T 80 -8.9 -3.94471 | opp_overlap 1909966, overlap 1909947 1909963 1909959 1909966 AGGGTAAAATAAATA TCCTCCGAC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2120 1909984 - 1909966 - T 93 -12.4 -2.95598 | opp_overlap 1909966, overlap 1909947 1909965 1909963 1909959 GGGTAAAATAAATAT CCTCCGAC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2121 1909966 - 1909984 + T 100 -10.2 -4.8048 | opp_overlap 1909947 1909965 1909963 1909959 1909966 GGGTAAAATAAATAT CCTCCGAC ATA GCCGGAGG TTTTTCATATGCGCC YPA_1703 1910523 - 1910065 - | transposase for the IS1541 insertion element TERM 2122 1910636 - 1910654 + H 100 -16 -4.36914 | opp_overlap 1910636 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2123 1910654 - 1910636 - H 100 -16 -3.07307 | opp_overlap 1910636 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2124 1910690 - 1910673 - H 100 -8.4 -5.24129 | TCTGGGCACAAAAAA GCCAGC ACCCGA GCTGGC TTAAAATACTGGAAG TERM 2125 1910791 - 1910777 - H 70 -5.8 -4.28361 | TGAATCGCATCAAAA TGATAA TAC TTATCA ATATCAATTGTAAAT YPA_1704 1911181 - 1912827 + | peptide transport periplasmic protein precursor YPA_1705 1912824 - 1913789 + | peptide transport system permease protein YPA_1706 1913776 - 1914666 + | peptide transport system permease protein TERM 2126 1915035 - 1915048 + G 79 -8.1 -4.42238 | opp_overlap 1915033 TGGACATATAAAGGC CGCTG GTGG CAGCG TTTTCATTGGCGTAA YPA_1707 1914666 - 1915658 + | peptide transport system ATP-binding protein YPA_1708 1915658 - 1916473 + | peptide transport system ATP-binding protein TERM 2127 1916514 - 1916533 + F 100 -12.2 -3.96534 | overlap 1916526 CGGTGGTTAACCTCC CCGCTATC TTTT GATAGCGG TTATCTTCTTTTAAC YPA_1709 1916863 - 1918143 + | hypothetical protein tppB 1918787 - 1920292 + | putative tripeptide transporter permease TERM 2128 1920322 - 1920303 - f 81 -9.2 -3.77607 | opp_overlap 1920304, overlap 1920304 AATAAGCTGACTAAA CGCGCTCC TGCG GGAGCGCT TTTAGTGCTAGTTAG TERM 2129 1920304 - 1920321 + F 100 -12.7 -4.33105 | opp_overlap 1920303 1920304 ATAAGCTGACTAAAC GCGCTCC TGCG GGAGCGC TTTTAGTGCTAGTTA TERM 2130 1920321 - 1920304 - f 89 -12.7 -2.85841 | opp_overlap 1920304, overlap 1920303 ATAAGCTGACTAAAC GCGCTCC TGCG GGAGCGC TTTTAGTGCTAGTTA YPA_1711 1920547 - 1921137 + | hypothetical protein TERM 2131 1921271 - 1921283 + F 74 -4.8 -4.84492 | TCCATCAGCATTGGA GCCT CTAAC AGGC TTTTATTGTCATTAA YPA_1712 1921383 - 1921646 + | hypothetical protein YPA_1713 1921764 - 1921913 + | glutathione S-transferase TERM 2132 1921961 - 1921931 - T 100 -15.6 -3.51694 | opp_overlap 1921928, overlap 1921927 AATAATGAGAATCAA TCAATTGCCCCC ATCACTA GGGGGCAATTGA AAATGGTTAGATTAC YPA_1714 1922833 - 1921973 - | pyridoxamine kinase TERM 2133 1922974 - 1922953 - R 87 -5.1 -5.52384 | opp_overlap 1922956, overlap 1922956 GTCTCAGCAAAAAAA TAAGGGACA TTTC TGCCCCTTC TCTTATTTTACGCTT TERM 2134 1922971 - 1922956 - R 82 -6.8 -4.8487 | opp_overlap 1922956, overlap 1922953 TCAGCAAAAAAATAA GGGACA TTTC TGCCCC TTCTCTTATTTTACG YPA_1715 1924262 - 1922988 - | tyrosyl-tRNA synthetase TERM 2135 1923372 - 1923387 + g 74 -2.5 -5.21506 | overlap 1923367 AACATATTGCGCGCG CGGTG CTTTAC CACTG TTTTTATCTTCTTCT TERM 2136 1923543 - 1923557 + g 70 -8.6 -3.74693 | CCAGACTGCACCCCC TTCGGT TTT ACCGAA TTTAGTGCCATCGGC YPA_1716 1925097 - 1924444 - | pyridoxamine 5'-phosphate oxidase YPA_1717 1925505 - 1925188 - | putative lipoprotein anmK 1926672 - 1925560 - | anhydro-N-acetylmuramic acid kinase TERM 2137 1926244 - 1926224 - G 70 -8.1 -3.69094 | AACGCATGATGGAAA GCGGGCACC AAG GGGGCCCCC TGCCCGCCATAGGCC YPA_1719 1927228 - 1927695 + | putative lipoprotein TERM 2138 1927747 - 1927777 + T 100 -14.1 -5.34555 | opp_overlap 1927751, overlap 1927751 TAAATCAGAACAGTA AAAACCGGGGTTC ATTGC GAACCCCGGTTTG TTTTTTGTACTGTGG TERM 2139 1927773 - 1927751 - T 100 -15.6 -4.90906 | opp_overlap 1927747 1927751 TCAGAACAGTAAAAA CCGGGGTTCA TTG CGAACCCCGG TTTGTTTTTTGTACT TERM 2140 1927751 - 1927773 + T 100 -14.9 -5.1471 | opp_overlap 1927751, overlap 1927747 TCAGAACAGTAAAAA CCGGGGTTC ATTGC GAACCCCGG TTTGTTTTTTGTACT YPA_1720 1928270 - 1927839 - | transcriptional regulator SlyA TERM 2141 1928432 - 1928412 - R 81 -5.5 -5.24531 | opp_overlap 1928415, overlap 1928415 ATTCTTTAGAAAAAA TGATGTATC AAC GATACATTA CCTCTTAAGGATTAA TERM 2142 1929060 - 1929032 - R 100 -8.9 -4.67942 | CCGAAGAAAGTAAAA CTACGCCAGTC TGAGCGC GATTGGCGTAG AGAAAGATTAAGGGA YPA_1721 1929964 - 1929068 - | putative aldo/keto reductase YPA_1722 1930461 - 1930096 - | hypothetical protein TERM 2143 1930295 - 1930264 - G 100 -14.6 -4.51097 | gap 1, overlap 1930253 GCAACCACGACAAAA GCCACGGTCATCTGT TTG ACAGAT-ACCGCGGC AGGGGCTGGGAATAT TERM 2144 1930331 - 1930318 - G 80 -3.1 -5.27779 | overlap 1930323 GGGAATATCAAAAAA CTCAA GTTG CTGAG CCACGCTGCCTCCTA TERM 2145 1930634 - 1930645 + G 87 -4.4 -5.40072 | opp_overlap 1930634 GATCCGATTCGACAA TAGC GACA GCTA TTTTTTTGCAGCAAC YPA_1723 1930509 - 1932146 + | putative cell division protein TERM 2146 1932306 - 1932325 + F 100 -5.7 -5.80364 | AGACCATAGCCTTGA TGCCAGC GCCTTG GTTGGCA TTTTTTTCTTGACCT YPA_1724 1932369 - 1932968 + | TetR family transcriptional regulator YPA_1725 1933056 - 1934153 + | N-ethylmaleimide reductase YPA_1726 1937328 - 1934374 - | insecticial toxin TERM 2147 1937914 - 1937932 + G 70 -4.6 -4.64676 | CTGGCCCGGTAAAAG GCGGTAAT ACC ATTATTGC TTTTGTTGAAGATCC YPA_1727 1937601 - 1938008 + | lactoylglutathione lyase TERM 2148 1938019 - 1938036 + F 87 -8.4 -4.48987 | opp_overlap 1938018 ACTGATTAACTTAAG GGCACC TCGGAC GGTGCC TTTTACTTATCACAA YPA_1728 1938087 - 1938767 + | ribonuclease T TERM 2149 1938807 - 1938790 - T 100 -8.4 -5.26875 | CTTGTAATTAAAAAA GGTGGC CATTAC GCCACC TGAGGTTATTGACAA TERM 2150 1938885 - 1938911 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1938874, overlap 1938880 1938884 ACATCCATGTAGGCT CGAACCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2151 1938975 - 1938992 + T 79 -8.4 -4.15703 | TTGTCAGCAGTCTGA GGTGGC CATTAC GCCACC TTCTTATTTATCACA YPA_1729 1939426 - 1939076 - | hypothetical protein TERM 2152 1939752 - 1939730 - H 88 -7 -5.1287 | opp_overlap 1939730 1939736, overlap 1939733 CTCAGAGTGAAAAAA CAACAATGGC AAC GCCATTAATG TTTTCTCACAATATC TERM 2153 1939749 - 1939733 - H 81 -7.3 -4.65666 | opp_overlap 1939730 1939736, overlap 1939730 AGAGTGAAAAAACAA CAATGGC AAC GCCATTA ATGTTTTCTCACAAT TERM 2154 1940157 - 1940141 - g 70 -2.9 -4.87892 | overlap 1940144 TCGCAATAAAATAAA CAGCAGT CGG ACAACTG AAAGTAAAACTGCAG YPA_1730 1939866 - 1940954 + | hypothetical protein TERM 2155 1941507 - 1941519 + G 73 -10.5 -3.31162 | opp_overlap 1941507, overlap 1941505 1941503 AAGAGATCGTGAAAA CCGCC AAT GGCGG TGTGTTTAATAATGC TERM 2156 1941519 - 1941507 - g 88 -10.5 -4.1413 | opp_overlap 1941507 1941505 1941503 AAGAGATCGTGAAAA CCGCC AAT GGCGG TGTGTTTAATAATGC YPA_1731 1941332 - 1941910 + | superoxide dismutase TERM 2157 1941963 - 1941985 + F 100 -16.4 -3.68222 | opp_overlap 1941963, overlap 1941966 CATCGATAACATAAA TAAGGGCGGT TTA ACCGCCCTTA TTATTACCATTCACC TERM 2158 1941985 - 1941963 - f 100 -16.4 -4.28188 | opp_overlap 1941963 1941966 CATCGATAACATAAA TAAGGGCGGT TTA ACCGCCCTTA TTATTACCATTCACC TERM 2159 1941966 - 1941982 + F 100 -13.7 -3.97139 | opp_overlap 1941963, overlap 1941963 CGATAACATAAATAA GGGCGGT TTA ACCGCCC TTATTATTACCATTC TERM 2160 1943165 - 1943148 - g 86 -6.9 -4.9725 | opp_overlap 1943148 1943150, overlap 1943151 ATTCTGACACAAAAA CATCGCC CAAC GGCGGTG TTCTGTGGCGGCGAT YPA_1732 1942437 - 1943462 + | DNA-binding transcriptional repressor PurR TERM 2161 1943509 - 1943529 + T 84 -9.8 -3.85092 | opp_overlap 1943512, overlap 1943503 1943512 CCGGCCCGATTCGGA TAACCGCA TTCCC TGCGGTTA TTTGCTATCGATGGT TERM 2162 1943512 - 1943526 + T 72 -7.1 -4.05208 | opp_overlap 1943512, overlap 1943503 1943509 GCCCGATTCGGATAA CCGCA TTCCC TGCGG TTATTTGCTATCGAT YPA_1733 1944483 - 1943551 - | putative DNA-binding transcriptional regulator TERM 2163 1944034 - 1944014 - G 74 -4.5 -4.82128 | overlap 1944015 TCACGAAAGACAAAA CGCCCACCC ACT GGGATGGCA CGGGTCGCCCCTATG YPA_1734 1944773 - 1945975 + | inner membrane transport protein YdhC YPA_1735 1946455 - 1947606 + | cyclopropane fatty acyl phospholipid synthase TERM 2164 1947616 - 1947645 + T 86 -5.7 -5.3236 | opp_overlap 1947616 1947619 1947621 1947623, overlap 1947619 CGCTAACCTCAGATA GGAGACAGGGG GATAAAAA CCCCTGTCTTA TTTTTTGTAGGTTAT TERM 2165 1947619 - 1947642 + T 100 -9.6 -4.73105 | opp_overlap 1947619 1947616 1947621 1947623, overlap 1947616 TAACCTCAGATAGGA GACAGGGG GATAAAAA CCCCTGTC TTATTTTTTGTAGGT YPA_1736 1948313 - 1947657 - | riboflavin synthase subunit alpha YPA_1737 1948562 - 1949935 + | multidrug efflux protein TERM 2166 1950024 - 1950014 - f 82 -6.8 -4.87803 | overlap 1950015 TAGTCTCAAATAAAA GGGA GTC TCCC CAACAACATCTGGAT TERM 2167 1952080 - 1952070 - g 70 -3.2 -4.89393 | GAAACCGCAGAAAAA CTGG AAG CCAA AGTGATTGTGGTCGC YPA_1738 1950966 - 1952378 + | pyruvate kinase TERM 2168 1952433 - 1952404 - f 77 -10.8 -2.77344 | opp_overlap 1952404 1952409, overlap 1952409 TTATTGTTCAATAAT TAAAACGCCGCT CTCTAT AGCGGCGTTTTC TTTTTTAAAGCTTGC TERM 2169 1952404 - 1952433 + F 100 -10.8 -5.055 | opp_overlap 1952404 1952409, overlap 1952409 TTATTGTTCAATAAT TAAAACGCCGCT CTCTAT AGCGGCGTTTTC TTTTTTAAAGCTTGC TERM 2170 1952428 - 1952409 - f 100 -10.7 -4.56133 | opp_overlap 1952404 1952409, overlap 1952404 GTTCAATAATTAAAA CGCCGCT CTCTAT AGCGGCG TTTTCTTTTTTAAAG TERM 2171 1952409 - 1952428 + F 100 -10.7 -5.42198 | opp_overlap 1952409 1952404, overlap 1952404 GTTCAATAATTAAAA CGCCGCT CTCTAT AGCGGCG TTTTCTTTTTTAAAG YPA_1739 1952699 - 1952935 + | major outer membrane lipoprotein TERM 2172 1952975 - 1952957 - f 100 -14.6 -4.8622 | opp_overlap 1952957 TTCCTGAATGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTGCCCAG TERM 2173 1952957 - 1952975 + F 100 -14.6 -5.60993 | opp_overlap 1952957 TTCCTGAATGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTGCCCAG TERM 2174 1953013 - 1952995 - f 100 -16 -4.36914 | opp_overlap 1952995 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2175 1952995 - 1953013 + F 100 -16 -3.07307 | opp_overlap 1952995 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_1740 1953184 - 1953585 + | putative transposase TERM 2176 1953663 - 1953687 + F 100 -9.9 -4.44046 | opp_overlap 1953666, overlap 1953665 1953666 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGCCCTACG TERM 2177 1953665 - 1953685 + F 100 -12.5 -3.82628 | opp_overlap 1953666, overlap 1953663 1953666 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGCCCTA TERM 2178 1953684 - 1953666 - f 100 -16 -4.8048 | opp_overlap 1953665 1953663 1953666 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCCT TERM 2179 1953666 - 1953684 + F 100 -16 -2.88854 | opp_overlap 1953666, overlap 1953665 1953663 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCCT TERM 2180 1954001 - 1953957 - f 90 -11.6 -3.66556 | gap 1, opp_overlap 1953949 1953944, overlap 1953958 AAGCGCGGAATACAA TTCTG-GCTTTACCACGATGG ATCT CCACCACGGTAAAGCACAGAC AAGTGATTAGTTATT TERM 2181 1954000 - 1953958 - f 100 -15.1 -2.79452 | gap 1, opp_overlap 1953949 1953944, overlap 1953957 AGCGCGGAATACAAT TCTG-GCTTTACCACGATGG ATCT CCACCACGGTAAAGCACAGA CAAGTGATTAGTTAT TERM 2182 1954145 - 1954163 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1741 1954167 - 1955189 + | transposase for insertion sequence IS100 TERM 2183 1955270 - 1955256 - g 77 -11.4 -3.3506 | overlap 1955247 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1742 1955189 - 1955968 + | transposase/IS protein YPA_1743 1957031 - 1956012 - | hypothetical protein YPA_1744 1957724 - 1957302 - | cysteine desufuration protein SufE TERM 2184 1957780 - 1957756 - R 91 -6.4 -5.43553 | opp_overlap 1957756 ACGTAAAAAATAAAA GCCGACTGCT GAAAG AATAGTCGGC TTTGGTGTTGCCTGT YPA_1745 1959033 - 1957813 - | selenocysteine lyase TERM 2185 1958812 - 1958801 - G 70 -4.4 -4.63218 | GCGGCGTGAATAAAA TCAG CCAC CTGA GTGCGTACGGCTTCC YPA_1746 1960355 - 1959030 - | cysteine desulfurase activator complex subunit SufD sufC 1961076 - 1960330 - | cysteine desulfurase ATPase component YPA_1748 1962773 - 1961262 - | cysteine desulfurase activator complex subunit SufB TERM 2186 1961418 - 1961431 + g 79 -5.3 -4.90906 | opp_overlap 1961418, overlap 1961426 CAAGCAATAGAACAG TTGGT CATC ACCAA TTTTTGATGTTGTGG TERM 2187 1961979 - 1961993 + g 74 -11.4 -3.1355 | ATAGCTGTCGCGCAC GGGTGC CGA GCACCC TTCGATATAGCTGAC sufA 1963159 - 1962788 - | iron-sulfur cluster assembly scaffold protein TERM 2188 1963014 - 1963002 - G 74 -6.9 -4.28977 | opp_overlap 1963001 ATAACATAGGCAAAA CCGGC ACA ACCGG ACTGTTTGACGCCGA TERM 2189 1963764 - 1963746 - R 78 -5.3 -5.03314 | gap 1 GCTATTGGCAAAAAA TGACGACG TTAG CG-CGTCA ATACGGCGATCGTTA YPA_1750 1964170 - 1963754 - | hypothetical protein YPA_1751 1967348 - 1964292 - | hypothetical protein TERM 2190 1967264 - 1967274 + g 74 -6.8 -4.4078 | opp_overlap 1967273 TAGTAGCAGTATCGC CGGT AAA ACCG TTTTGCTTCAAAGCG TERM 2191 1967314 - 1967299 - G 74 -4 -5.03747 | overlap 1967301 AAAGCGTCCAAAAAA TCCAGT ACCG ACTGAA TGACACCCGGTGCCT YPA_1752 1967969 - 1969072 + | putative inner membrane protein TERM 2192 1969246 - 1969256 + T 80 -2.6 -5.4505 | ATCTCATTCTACTTC TTAT TTA ATAA TTTTTTATTCAGAGG TERM 2193 1969415 - 1969434 + T 100 -9.3 -6.21477 | CTGTGTGTAGTCTTT GCCTGTC ACCTAA GACAGGC TTTTTTTTTGCTATT TERM 2194 1969588 - 1969569 - T 100 -10 -5.47399 | overlap 1969558 TTAATTGCAAAAAAA TCCGCAAC CTAA GCTGCGGA TGATGAATACCTATA YPA_1753 1972055 - 1969671 - | phosphoenolpyruvate synthase YPA_1754 1972373 - 1973194 + | hypothetical protein TERM 2195 1973466 - 1973452 - g 74 -10 -3.50393 | GGTTATTGCAGATAA CGTGAC GGC GTCACG TAAACGAATAGAGAA YPA_1755 1973351 - 1974397 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2196 1974447 - 1974495 + T 95 -7.8 -5.00616 | gap 1, opp_overlap 1974462, overlap 1974449 1974490 ATTAAATGAATACCT TCGGGATAGGGAAAAGTTAAC GTTGTCGG GTTAACTTTT-TCTATCCCTA TTTTTTCCGAAAAAA TERM 2197 1974449 - 1974493 + T 91 -10.4 -4.13561 | gap 1, opp_overlap 1974462, overlap 1974447 1974490 TAAATGAATACCTTC GGGATAGGGAAAAGTTAAC GTTGTCGG GTTAACTTTT-TCTATCCC TATTTTTTCCGAAAA YPA_1756 1975285 - 1974566 - | hypothetical protein YPA_1757 1976029 - 1975307 - | hypothetical protein lplA 1977097 - 1976081 - | lipoate-protein ligase A YPA_1759 1977686 - 1977222 - | putative lipoprotein YPA_1760 1978352 - 1977966 - | hypothetical protein YPA_1761 1978693 - 1978349 - | hypothetical protein TERM 2198 1978499 - 1978472 - G 87 -9.9 -4.32571 | CAACACAAAATTAAA GCTGAGCATAG GATAGG CCACGCTCAGC GGGAGTTGCTGCAAT TERM 2199 1978620 - 1978572 - G 82 -13.1 -3.34895 | opp_overlap 1978589 GCTATCGCCAACCAA CGCAATGTCAGATTCAACCGCCG GGC CTGCGGTTGCTCCCAACACTGCG CAGCCTGTTTTTGAC arnT 1980354 - 1978690 - | 4-amino-4-deoxy-L-arabinose transferase TERM 2200 1980155 - 1980165 + g 86 -8.2 -4.59773 | opp_overlap 1980154 1980152 1980155 TTATTAAACCAATAC CCGG CGA CCGG TTTTTCAAAATAACG YPA_1763 1981256 - 1980351 - | hypothetical protein TERM 2201 1981120 - 1981103 - G 79 -6.9 -4.7254 | opp_overlap 1981102, overlap 1981105 AGCGCGGACGAAAAA GGCGCCA TAAA TGGCGTC CCATATTATCCGGCC YPA_1764 1983256 - 1981253 - | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase TERM 2202 1983147 - 1983137 - G 91 -6.8 -5.10767 | overlap 1983129 GACCGAAGAGAAAAA GCGA TTC TCGC CAGGATTATCAGTAT YPA_1765 1984236 - 1983253 - | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase TERM 2203 1983994 - 1983976 - G 82 -11 -3.76492 | opp_overlap 1983976 GCTAACCTGATTAAA TCCCGCCA TAA TGGCGGAA TGTTGACCATAATTA YPA_1766 1985377 - 1984223 - | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YPA_1767 1986485 - 1985727 - | vitamin B12-transporter ATPase YPA_1768 1987064 - 1986510 - | putative glutathione peroxidase YPA_1769 1988156 - 1987134 - | vtamin B12-transporter permease TERM 2204 1988351 - 1988307 - R 75 -8.7 -3.63515 | opp_overlap 1988305 1988307 CTTTATTGCTAATAA GTCGCTAACTCTGCTTGGTCA TAG CAAACAAGTAAAGTTAGCAAC TGTTTGTTATGCTCG YPA_1770 1988787 - 1988368 - | hypothetical protein TERM 2205 1989141 - 1989126 - R 100 -11.8 -5.45802 | opp_overlap 1989126 TCTTGAAAAGAAAAA GGCCGC TTGC GCGGCC TTTTATGTCGGAAAC TERM 2206 1989126 - 1989141 + r 100 -11.8 -4.52589 | opp_overlap 1989126 TCTTGAAAAGAAAAA GGCCGC TTGC GCGGCC TTTTATGTCGGAAAC ihfA 1989456 - 1989160 - | integration host factor subunit alpha pheT 1991848 - 1989461 - | phenylalanyl-tRNA synthetase subunit beta pheS 1992845 - 1991862 - | phenylalanyl-tRNA synthetase subunit alpha TERM 2207 1991987 - 1991971 - G 79 -8 -4.29176 | ATACCGAATGCAAAA CCTGAG TAAAT CTCAGG ATCGATACCGACATT TERM 2208 1992729 - 1992740 + g 78 -3.6 -5.09895 | overlap 1992718 CGATGTCATTTGAAG GGTC AAGT GGCC TTTTTTACCTAGATA TERM 2209 1993154 - 1993137 - g 100 -8.4 -6.04324 | GTAAAAAACAAAAAA GCCTCC ACGATG GGAGGC TTCGGCGCTATTTTT YPA_1774 1993038 - 1993217 + | hypothetical protein TERM 2210 1993313 - 1993331 + T 78 -10.3 -3.2496 | opp_overlap 1993313, overlap 1993308 GTGCAAAGATTAAAA GAGGGAG ACAAG CTCCCTC TTCAATTCTGACTTA TERM 2211 1993331 - 1993313 - T 100 -10.3 -4.49756 | opp_overlap 1993313 1993308 GTGCAAAGATTAAAA GAGGGAG ACAAG CTCCCTC TTCAATTCTGACTTA rplT 1993700 - 1993344 - | 50S ribosomal protein L20 rpmI 1993935 - 1993738 - | 50S ribosomal protein L35 YPA_1777 1994382 - 1994032 - | translation initiation factor IF-3 YPA_1778 1996515 - 1994587 - | threonyl-tRNA synthetase TERM 2212 1994820 - 1994832 + g 80 -3.3 -5.32565 | CTTTTGCTCTAATAC CCGCA TCT TGCAG TTTTTTGGTTACTTG TERM 2213 1997048 - 1997066 + G 86 -3 -5.56568 | overlap 1997050 ATCAAAACTTTATGT CTGCCGTT TCG AAAGGCCG TTTTTTTGATGGTGT YPA_1779 1996906 - 1997118 + | hypothetical protein TERM 2214 1997757 - 1997784 + T 100 -13.5 -5.19275 | TGGTTACTGGAACGT CGCCCTGATTG TTTATT CAATCGGGGCG TTTTATTTTCTGGCT YPA_1780 1998209 - 1997877 - | hypothetical protein YPA_1781 1998446 - 1999129 + | multiple drug resistance protein MarC YPA_1782 1999913 - 1999251 - | putative membrane-bound lytic murein transglycosylase TERM 2215 1999802 - 1999813 + g 85 -3.6 -5.40072 | CTACGTTAAGAGAAT TGCC CTGT GGCG TTTTTTTCAGCCACC TERM 2216 1999896 - 1999883 - G 82 -6.7 -4.89477 | CCGCCAACAATAAAA TTGCC ATTA GGCAA CCGACTTTTGAATTC YPA_1783 2000125 - 2001093 + | periplasmic-binding protein YPA_1784 2001090 - 2001980 + | ATP-binding transport protein YPA_1785 2001980 - 2002864 + | chelated iron transport system membrane protein TERM 2217 2003025 - 2003042 + G 73 -5.5 -4.67755 | TTCTCATGCTGTGCT GCCAGGG ATTG TTCTGGC TTTTTGGCTCGGTAT YPA_1786 2002861 - 2003754 + | chelated iron transport system membrane protein YPA_1787 2003822 - 2004034 + | hypothetical protein YPA_1788 2004059 - 2004934 + | hypothetical protein YPA_1789 2005617 - 2005063 - | putative yfeABCD locus regulator TERM 2218 2005681 - 2005695 + H 76 -10 -3.36195 | overlap 2005670 2005680 2005678 ACATCCACACGTTGT GCGGTA CTT TACCGC TATGTTTGCTATTTA YPA_1790 2006028 - 2006693 + | 2-deoxyglucose-6-phosphatase TERM 2219 2006816 - 2006803 - T 71 -2.3 -5.14563 | overlap 2006784 2006783 2006804 CTTTTTAGTAAAAAA GTCGC TATA GCGAT ACGGAGTGGAAAGGA TERM 2220 2006886 - 2006857 - T 93 -10.7 -4.16842 | gap 1, opp_overlap 2006856 2006853, overlap 2006858 GTCAGCGGTAATAAA GGGCGGCCAGAGTC AGT GACTC-AGCCGCCG AATATATTTTAGAGA TERM 2221 2006885 - 2006858 - T 100 -14.2 -3.09784 | gap 1, opp_overlap 2006856 2006853, overlap 2006857 TCAGCGGTAATAAAG GGCGGCCAGAGTC AGT GACTC-AGCCGCC GAATATATTTTAGAG TERM 2222 2006970 - 2006949 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_1791 2008152 - 2006944 - | transposase for the IS285 insertion element YPA_1792 2008550 - 2008200 - | hypothetical protein YPA_1793 2008886 - 2009722 + | 5-keto-4-deoxyuronate isomerase TERM 2223 2009754 - 2009738 - f 70 -7.2 -3.77196 | opp_overlap 2009738 GTATCACCTATTAAA GCCACC TTTAC GGCGGC TTTCACCTCCAATAA TERM 2224 2009967 - 2009987 + G 70 -4.6 -4.59773 | opp_overlap 2009964 2009967 GAGACTATCGAACAA GTGACTGC ACTGG GCCGTCGC TTTTTCAGCCTGACC YPA_1794 2009769 - 2010575 + | 2-deoxy-D-gluconate 3-dehydrogenase TERM 2225 2010663 - 2010682 + F 100 -12.2 -5.74288 | opp_overlap 2010660 CTCAAAAACGCATCA GGCACAAC TTTG GTTGTGCC TTTTTTATTATTTAT TERM 2226 2010777 - 2010761 - f 91 -3.7 -5.83211 | CACCAAAATAAAAAA TCAAAAC AAC GTTCCGA CTTCGATCACACTTT YPA_1795 2010911 - 2011450 + | exopolygalacturonate lyase YPA_1796 2012239 - 2011460 - | transposase/IS protein TERM 2227 2012158 - 2012172 + g 77 -11.4 -3.3506 | overlap 2012171 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1797 2013261 - 2012239 - | transposase for insertion sequence IS100 TERM 2228 2013283 - 2013265 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_1798 2013320 - 2014537 + | exopolygalacturonate lyase YPA_1799 2014578 - 2015468 + | putative ABC sugar transporter (permease) YPA_1800 2015461 - 2016381 + | putative sugar ABC transporter (permease) YPA_1801 2016395 - 2017522 + | putative sugar ABC transporter TERM 2229 2018077 - 2018066 - g 84 -4.4 -5.30616 | opp_overlap 2018066 2018068 GTATTTAAAGAAAAA TTGG GTGA CCAA TATTACCCTGTTGTA YPA_1802 2017538 - 2018830 + | putative sugar-binding protein TERM 2230 2018894 - 2018857 - f 71 -10 -2.57192 | opp_overlap 2018857 2018862, overlap 2018862 ATTTAACTTAAGTCA CAAAATAACCCTGCCA TTTATT TGGTGGGGTTATTTTG TTTAATCAAATAAAA TERM 2231 2018857 - 2018894 + F 100 -14.4 -3.74693 | opp_overlap 2018857 2018862, overlap 2018862 ATTTAACTTAAGTCA CAAAATAACCCTGCCA TTTATT TGGTGGGGTTATTTTG TTTAATCAAATAAAA TERM 2232 2018862 - 2018889 + F 100 -8.5 -4.93877 | opp_overlap 2018862 2018857, overlap 2018857 ACTTAAGTCACAAAA TAACCCTGCCA TTTATT TGGTGGGGTTA TTTTGTTTAATCAAA YPA_1803 2019128 - 2019838 + | hypothetical protein TERM 2233 2019906 - 2019935 + F 100 -13.1 -5.53288 | gap 1, opp_overlap 2019913 2019914 CTCTGCATTATTTTG GGGAAAAGTTGACT CCC AGTCA-CTTTTCCC TTTTTTTAGCTTAGC TERM 2234 2020676 - 2020715 + G 82 -11.2 -3.76641 | opp_overlap 2020673 TGGCCGATATGATTA CGCCAGCCGGTGTGCCGC TATT GTGGCCCTGCCGCTGGCG TTTCAGTATTCCGCT YPA_1804 2020318 - 2020866 + | hypothetical protein YPA_1805 2021070 - 2022461 + | putative transport protein YPA_1806 2023527 - 2022676 - | N-acetylmuramoyl-L-alanine amidase TERM 2235 2023809 - 2023789 - R 100 -9 -4.7373 | opp_overlap 2023789 TCATGTGATGAAAAA CAGCCCCT GCCAG AGGAGCTG TTTTTATAAAAAGAG TERM 2236 2023789 - 2023809 + r 82 -6.8 -4.82901 | opp_overlap 2023789 TCATGTGATGAAAAA CAGCCCCT GCCAG AGGAGCTG TTTTTATAAAAAGAG YPA_1807 2024703 - 2023912 - | IclR family transcriptional regulator TERM 2237 2024877 - 2024851 - R 100 -12.4 -3.88498 | CTTGCAGACAGCAAA TTAGCCTCTTTC TAA GAGAGAGGCTAA TGGAAAACTCGGCTA YPA_1808 2026056 - 2024890 - | oligogalacturonate lyase TERM 2238 2026799 - 2026824 + G 84 -11.3 -3.81691 | overlap 2026782 TCGAGCCCAACTTGG TCGAGGTATTG GTAT CAATACCTTGA TTGTTGCTGTGTCTT YPA_1809 2026383 - 2027750 + | putative transport protein YPA_1810 2028607 - 2027804 - | putative chaperone protein YPA_1811 2029766 - 2028732 - | putative fimbrial protein YPA_1812 2032375 - 2029763 - | putative outer membrane usher protein TERM 2239 2030079 - 2030089 + g 73 -5.4 -4.68994 | opp_overlap 2030070, overlap 2030075 GCAACAGCACCTGCG GTTG GCG CAAC TTTTTGGCTAGTACT TERM 2240 2032459 - 2032408 - R 72 -10 -2.84999 | opp_overlap 2032408 2032423, overlap 2032423 ATTAAATGCAGTATA TAAAAGTGCAAAAAATACAAATTA CCCT TAATTTGTATTTTTTATAGTTTTA TTGGGTCAGTTTTTG TERM 2241 2032408 - 2032459 + r 74 -10 -3.14261 | opp_overlap 2032408 2032423, overlap 2032423 ATTAAATGCAGTATA TAAAAGTGCAAAAAATACAAATTA CCCT TAATTTGTATTTTTTATAGTTTTA TTGGGTCAGTTTTTG TERM 2242 2032423 - 2032444 + r 95 -7.5 -5.4588 | opp_overlap 2032423 2032408, overlap 2032408 TAAAAGTGCAAAAAA TACAAATTA CCCT TAATTTGTA TTTTTTATAGTTTTA TERM 2243 2032444 - 2032423 - R 90 -7.5 -5.15117 | opp_overlap 2032408 2032423, overlap 2032408 TAAAAGTGCAAAAAA TACAAATTA CCCT TAATTTGTA TTTTTTATAGTTTTA YPA_1813 2033236 - 2032457 - | putative chaperone protein TERM 2244 2033268 - 2033286 + r 100 -10.3 -4.386 | opp_overlap 2033267 2033266 TCGAACTTATAAAGC TGGGAGC ACTAA GCTCCCA TTTTATGCCGGATTG YPA_1814 2033931 - 2033389 - | fimbrial protein TERM 2245 2034322 - 2034307 - R 100 -4.8 -5.9362 | GAAAAGACAAAAAAA TTCATT TTTC AATGAA GTAAGTCACAGATTT TERM 2246 2034511 - 2034483 - R 100 -13.2 -5.44119 | GCCACGGTAAAAAAA CACCCTGTCAGC TTACC GCTCACAGGGTG TGAAGACCATATTAT YPA_1815 2035470 - 2034589 - | heat shock protein HtpX TERM 2247 2035922 - 2035901 - R 100 -8.7 -6.31682 | opp_overlap 2035901 AAAAGCAAAAAAAAA TCCGAGTCC AATA AGACCCGGA TTCTTCATATTATTT YPA_1816 2038016 - 2035944 - | carboxy-terminal protease YPA_1817 2038749 - 2038036 - | putative solute/DNA competence effector TERM 2248 2038293 - 2038320 + g 76 -2.7 -5.08824 | overlap 2038293 TGCGGTTTTCCGGAG CC-GCACCCGCTT CACG ACGCGG-TGCAGG TTTTTTACCTGCCGG TERM 2249 2038571 - 2038592 + g 73 -10.9 -3.29147 | GTGTAGAGACGCAGC GCAGAACGC AATT GCGTTTTGC TTAAATTCTCTTCCC TERM 2250 2038693 - 2038683 - G 79 -8.2 -4.41348 | CGGCGGTGAAACAAA GCGG GAA CCGC TCGGCCAAAAAGGCT TERM 2251 2038817 - 2038798 - R 86 -12.2 -3.1552 | overlap 2038796 GCGCAGGCATGAACA GGCGTCAT TATA ATGACGCC ATCAGCAATTGCCAC YPA_1818 2039342 - 2038845 - | hypothetical protein TERM 2252 2039082 - 2039094 + g 73 -6.2 -4.4891 | ATGCACATTACCTAC CCGC TGAAC GCGG TTTTCTGCTACTGCG TERM 2253 2039414 - 2039433 + H 81 -10.8 -3.34936 | opp_overlap 2039370 2039414 AAAATAATCATTAAA TACCCTTG GCGA CAAGGGTA TTCCTCTGTAATGTT TERM 2254 2039433 - 2039414 - H 90 -10.8 -3.91642 | opp_overlap 2039414, overlap 2039370 AAAATAATCATTAAA TACCCTTG GCGA CAAGGGTA TTCCTCTGTAATGTT YPA_1819 2039469 - 2040812 + | hypothetical protein TERM 2255 2042692 - 2042678 - g 74 -8.5 -3.98282 | overlap 2042648 TGTATAGTAATGAAA CGGCC GCACG GGCCG TGGGTAGCCAGATTA YPA_1820 2040790 - 2043432 + | hypothetical protein TERM 2256 2044139 - 2044155 + G 74 -6.5 -4.29304 | opp_overlap 2044121 2044120, overlap 2044135 GCATTCAGTGGCACA CTGAGCG GGA CTCTCAG TTTGTATTGTAGTGC YPA_1821 2043911 - 2044465 + | hypothetical protein YPA_1822 2044471 - 2045001 + | hypothetical protein YPA_1823 2045022 - 2045579 + | hypothetical protein YPA_1824 2045610 - 2046362 + | putative chaperone protein YPA_1825 2046533 - 2048980 + | outer membrane usher protein YPA_1826 2049186 - 2050175 + | hypothetical protein YPA_1827 2050383 - 2050622 + | hypothetical protein YPA_1828 2051120 - 2050773 - | hypothetical protein YPA_1829 2051388 - 2051513 + | hypothetical protein TERM 2257 2051505 - 2051523 + F 100 -13.2 -4.01078 | CCAGGGGGTAGTCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_1830 2051527 - 2052549 + | putative transposase TERM 2258 2052630 - 2052616 - g 77 -11.4 -3.3506 | overlap 2052607 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_1831 2052549 - 2053328 + | transposase/IS protein YPA_1832 2054100 - 2053867 - | hypothetical protein TERM 2259 2053987 - 2054013 + g 84 -2.2 -5.60993 | opp_overlap 2053987 CCATTCATCGAAAGA GTGTTCCGAG TAGCTAT CGCTGAACAC TTTTTTTATCGAGGA YPA_1833 2055511 - 2054255 - | putative lipoprotein TERM 2260 2054375 - 2054389 + g 76 -11.4 -3.19522 | opp_overlap 2054374 2054373 TCCTTCGGCATAACC CGCCTG ATA CAGGCG TTCCATCTTGACTGG TERM 2261 2055764 - 2055738 - R 72 -7.2 -3.9749 | gap 1, overlap 2055739 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCCCCAGGGATG YPA_1834 2056152 - 2055904 - | hypothetical protein YPA_1835 2057313 - 2058542 + | alanine racemase YPA_1836 2060114 - 2059161 - | hypothetical protein TERM 2262 2060176 - 2060147 - R 84 -10.7 -3.61089 | opp_overlap 2060148, overlap 2060148 CCCTAAGAAGTAGAA TCGGGCTGTGCAA AAAA TCGCACAACCCGT TAATGATTATTAAAC TERM 2263 2060148 - 2060175 + r 76 -9.8 -3.33171 | opp_overlap 2060147 2060148 CCTAAGAAGTAGAAT CGGGCTGTGCAA AAAA TCGCACAACCCG TTAATGATTATTAAA TERM 2264 2060175 - 2060148 - R 95 -14.2 -2.76171 | opp_overlap 2060148, overlap 2060147 CCTAAGAAGTAGAAT CGGGCTGTGCAA AAAA TCGCACAACCCG TTAATGATTATTAAA YPA_1837 2060759 - 2060214 - | putative surface protein YPA_1838 2062845 - 2060635 - | hypothetical protein TERM 2265 2061401 - 2061387 - GR 80 -11.4 -2.64747 | opp_overlap 2061395, overlap 2061386 2061389 TGACCGCATCATAAT CAGCCG AAC CGGCTG CCACACCGGTGATCT TERM 2266 2061878 - 2061864 - GR 80 -11.4 -2.68719 | opp_overlap 2061872, overlap 2061863 2061866 TGACCACATCATAAT CAGCCG AAC CGGCTG CCACACCGGTGATCT TERM 2267 2062244 - 2062267 + gr 72 -9.6 -3.09933 | gap 1 GCAATAGCATCCTGA CCCGCAGGCAC GGA GT-CTTGCGGG TTCACTGAGTTGGCG TERM 2268 2062346 - 2062332 - GR 84 -11.4 -3.1506 | AAAGCTGGCTACCAA CCACCG CAT CGGTGG AGGTCGATGAAATCG TERM 2269 2062548 - 2062534 - GR 72 -7.8 -3.85817 | AGGGGTGGCGATAAA GCTAGG CTT CCCAGC GATCCCACCTTTTCC YPA_1839 2063966 - 2063202 - | N-acetylmuramoyl-L-alanine amidase TERM 2270 2064047 - 2064033 - H 71 -10 -2.63257 | overlap 2064029 ACTGTATATAATCCA GCACAC AAT GTGTGC GCCGCATCAATATTT YPA_1840 2064098 - 2064217 + | hypothetical protein TERM 2271 2064521 - 2064486 - T 74 -4.6 -4.81685 | overlap 2064492 ATGAAGTATGAAAAA TATAAACCGGCAGGGA CAAT TCCCTACCGGTTAGCG CTATCGATAACGTCA TERM 2272 2064515 - 2064492 - T 100 -14.6 -4.58297 | overlap 2064486 TATGAAAAATATAAA CCGGCAGGGA CAAT TCCCTACCGG TTAGCGCTATCGATA YPA_1841 2065181 - 2064537 - | chemotaxis regulator CheZ YPA_1842 2065580 - 2065191 - | chemotaxis regulatory protein CheY YPA_1843 2066730 - 2065681 - | chemotaxis-specific methylesterase TERM 2273 2065968 - 2065947 - G 71 -6.6 -4.25859 | gap 1, overlap 2065961 CCGAACGGAAAAGAA CGTCAACCG AAGGA CGGT-GACG ATTAACCGCGGGTCC YPA_1844 2067617 - 2066730 - | chemotaxis methyltransferase CheR TERM 2274 2066878 - 2066854 - G 73 -6.4 -4.51799 | opp_overlap 2066855, overlap 2066855 AGCAAAGGTACAAAA CGACGCAGAA TGCGT TCCTGCGTCT CTTTATCAAAATAGA TERM 2275 2066877 - 2066855 - G 70 -9.9 -3.29995 | opp_overlap 2066855, overlap 2066854 GCAAAGGTACAAAAC GACGCAGAA TGCGT TCCTGCGTC TCTTTATCAAAATAG TERM 2276 2067688 - 2067720 + r 76 -10.7 -2.60808 | overlap 2067685 CTTTACAGCCACTTG TCGTTACTCGTGATG ACC CGTTACGAGTGATGA TCGATTGTCACTCCT YPA_1845 2069385 - 2067775 - | hypothetical protein YPA_1846 2071242 - 2069569 - | methyl-accepting chemotaxis protein TERM 2277 2070265 - 2070277 + g 71 -6.9 -4.16251 | overlap 2070276 CAATGCTAATTGACT CGCCT GAC GGGCG TTTTCAGCGTTCTGT TERM 2278 2070842 - 2070870 + g 70 -2.5 -5.03145 | opp_overlap 2070851, overlap 2070843 AGTTCGGTTAAGGCA CTAAAATATTCCT CGT AGGACTGTTTTAA TTTTTTGGCGCCTTC TERM 2279 2071219 - 2071201 - G 70 -8.9 -3.51158 | ACCAAATAATACTAA TACCAGC AGCAG GCTGGTA ACCACTTTCATACGC YPA_1847 2072121 - 2071483 - | hypothetical protein TERM 2280 2071661 - 2071671 + g 76 -6.8 -4.55689 | CGGAAGATATCGGCC GGTG TAG CACC TTTTCTGTGAATAGT YPA_1848 2075288 - 2072253 - | putative integral membrane protein TERM 2281 2073336 - 2073311 - G 73 -5.4 -4.70319 | gap 1 GTACCAAAACTAAAA GCTGACCC-GC GAGCA GCAGGGTTAGC GTAACCTGGCTGAAA YPA_1849 2079622 - 2075816 - | hypothetical protein TERM 2282 2077040 - 2077060 + g 70 -11.1 -2.50816 | overlap 2077039 GTTCACCCGGACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG TERM 2283 2080000 - 2080020 + r 89 -12.7 -2.73875 | overlap 2079998 CATATTAATGTTACT TCGCCATAA AAT TTATGGCGA TACTATTCGGCCAAC YPA_1850 2080743 - 2080078 - | putative DNA-binding protein TERM 2284 2081213 - 2081233 + G 82 -11.9 -3.62597 | opp_overlap 2081200 2081201 AAGCCGTGCAATTTG CATCTGCAC TGG GTGCGGATG TTATTCGAACCTACA YPA_1851 2080933 - 2081919 + | hypothetical protein YPA_1852 2081916 - 2082293 + | YjgF-family lipoprotein TERM 2285 2082748 - 2082758 + G 70 -2.4 -5.05606 | ATGTACTTATCGCTT CTGG TGC CCTG TTTGTTTTTGTTCAG YPA_1853 2082306 - 2083541 + | hypothetical protein TERM 2286 2083609 - 2083579 - T 81 -9.6 -3.87075 | opp_overlap 2083579 2083578 2083577 2083582, overlap 2083582 ATGACTTGTCATAAA GAACCGCCCGAGCA ATA TGCAATGGCGGTTC AGTTCTTTATTTCAG YPA_1854 2084330 - 2083833 - | purine-binding chemotaxis protein TERM 2287 2083873 - 2083883 + g 79 -6.8 -4.70659 | AACGACATCTCTTCA CTGC TCA GCAG TTTTTCGATATCAAC YPA_1855 2086658 - 2084493 - | chemotaxis protein CheA TERM 2288 2084804 - 2084768 - G 74 -10.1 -3.55084 | overlap 2084766 2084800 TTTTAACATCAAAGA CGCGGTACAATTCAACC AAT GGTAGAAATTCACCGCG AACTTGCAGCACGCG TERM 2289 2086122 - 2086142 + g 71 -11.1 -2.7535 | opp_overlap 2086118 2086117, overlap 2086118 CAAACGAATACGCAT CCCGCCTTG AAG CAACGCGGG TGATGTGTTGCCAGC TERM 2290 2086645 - 2086632 - G 76 -3.1 -5.14563 | TGCTTCATCAAAAAA CGTCT GATA AAACG CGGTAATATCCATGC motB 2087958 - 2086675 - | flagellar motor protein MotB TERM 2291 2087078 - 2087100 + g 70 -2.6 -5.03994 | opp_overlap 2087083, overlap 2087079 ACCGTCCCGTGAGTA TCAATCTGCT TTA AGCCGGTTGC TTTTTCTATATCCAG TERM 2292 2087381 - 2087403 + g 73 -11.4 -3.00476 | overlap 2087386 AGGTCATCGGTGTGA CCGGATAAAC TGA GTTTATTCGG TATGTCATTCAGGAT YPA_1857 2088842 - 2087955 - | flagellar motor protein MotA TERM 2293 2088119 - 2088133 + g 79 -8.6 -4.40993 | ACAGCAGAGTCACTT TGATGC ATT GCATCA TTTTGGTCGTTTCTG YPA_1858 2089628 - 2089047 - | transcriptional activator FlhC YPA_1859 2089983 - 2089726 - | hypothetical protein TERM 2294 2090045 - 2090021 - R 78 -7.3 -4.45168 | GTTTTAAAACATAAA TTGAATGACAA AAT TTATCACTCAA AACCAGGGATCCTTC TERM 2295 2091137 - 2091097 - R 71 -9.1 -3.36569 | opp_overlap 2091101 2091103, overlap 2091095 2091099 2091101 CTAATCTTTTAAATA CACACACTATTCCAGGG CAGCCAC CCCCGGAATAGTGTCTT GAGATCAACCAGGCT TERM 2296 2091135 - 2091099 - R 86 -11.7 -3.24976 | opp_overlap 2091101 2091103, overlap 2091097 2091095 2091101 AATCTTTTAAATACA CACACTATTCCAGGG CAGCCAC CCCCGGAATAGTGTC TTGAGATCAACCAGG TERM 2297 2091101 - 2091133 + r 86 -12.1 -3.05844 | opp_overlap 2091099 2091097 2091095 2091101, overlap 2091103 TCTTTTAAATACACA CACTATTCCAGGG CAGCCAC CCCCGGAATAGTG TCTTGAGATCAACCA TERM 2298 2091133 - 2091101 - R 100 -14.3 -3.18571 | opp_overlap 2091101 2091103, overlap 2091099 2091097 2091095 TCTTTTAAATACACA CACTATTCCAGGG CAGCCAC CCCCGGAATAGTG TCTTGAGATCAACCA YPA_1860 2093870 - 2091171 - | Mg(2+) transport ATPase protein B TERM 2299 2092828 - 2092847 + g 71 -7.8 -4.11484 | opp_overlap 2092817, overlap 2092829 ACCACGACTTTACGC CGGGCCAT CGCG ATGGCCCC TTTTGCCAGATTAGA TERM 2300 2092829 - 2092846 + g 74 -11.3 -3.06569 | overlap 2092828 CCACGACTTTACGCC GGGCCAT CGCG ATGGCCC CTTTTGCCAGATTAG YPA_1861 2094969 - 2094271 - | Mg(2+) transport ATPase protein C TERM 2301 2096446 - 2096433 - gH 77 -4.5 -5.055 | GCAAGGCCTAAAAAA TGCAG AAGG CCGCA TAGCTCAGTCACAGC TERM 2302 2097109 - 2097080 - gH 76 -7.9 -4.1822 | gap 1, overlap 2097081 CTTCACTTGAACAAA CTGCGGCCAGCATG GAG CA-ACTGACCGCAA CCGTGAAACAGAATG TERM 2303 2097108 - 2097081 - gH 72 -9.2 -3.10611 | gap 1, overlap 2097080 TTCACTTGAACAAAC TGCGGCCAGCATG GAG CA-ACTGACCGCA ACCGTGAAACAGAAT YPA_1862 2096095 - 2097414 + | hypothetical protein YPA_1863 2097368 - 2097829 + | methyl-accepting chemotaxis protein III (MCP-III) TERM 2304 2097961 - 2097932 - T 95 -8 -5.2197 | gap 2, opp_overlap 2097932 GATAAAAAGCAAAAA CCGGAGGATAAGGT ATGA ACCTT--CCTCCGG TTTTTTATCGCAATA TERM 2305 2097932 - 2097961 + T 100 -8 -5.252 | gap 2, opp_overlap 2097932 GATAAAAAGCAAAAA CCGGAGGATAAGGT ATGA ACCTT--CCTCCGG TTTTTTATCGCAATA YPA_1864 2098203 - 2098012 - | hypothetical protein TERM 2306 2098391 - 2098378 - R 100 -9.5 -5.25893 | opp_overlap 2098378 ACAGACAGTAAAAAA CCCGC CTTA GCGGG TTTTTTTATAATCAG TERM 2307 2098378 - 2098391 + r 100 -9.5 -5.67063 | opp_overlap 2098378 ACAGACAGTAAAAAA CCCGC CTTA GCGGG TTTTTTTATAATCAG YPA_1865 2098630 - 2098418 - | cold shock protein TERM 2308 2098966 - 2098981 + r 70 -2.5 -5.07567 | AAATTGTTATCTCTT CGTAG TGCGCC CTGCG TTTTTTGGCCTCTCA YPA_1866 2099846 - 2099067 - | transposase/IS protein TERM 2309 2099765 - 2099779 + g 77 -11.4 -3.3506 | overlap 2099778 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1867 2100868 - 2099846 - | transposase for insertion sequence IS100 TERM 2310 2100890 - 2100872 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 2311 2102854 - 2102872 + G 89 -10.2 -4.42806 | GGCATTTCGTCAGTA CCCGCGCT TAC AGGGCGGG TTTATTTGGGACTGG lacZ 2101130 - 2104312 + | beta-D-galactosidase TERM 2312 2104498 - 2104516 + F 100 -11 -5.9003 | opp_overlap 2104497 CTTTGCAAAATTTAC GCGCTCAT CCT ATGGGCGC TTTTTTTGTTCCTTT TERM 2313 2104582 - 2104594 + F 71 -2 -5.15969 | TGATAGTTACGCACG TTCA CTCTA TGAA TTTTTTCCATTACAC YPA_1869 2104719 - 2105729 + | Zinc-binding dehydrogenase TERM 2314 2105874 - 2105854 - f 76 -9.7 -3.37879 | opp_overlap 2105833, overlap 2105844 AGCAAGGGCAACTAA CCCCCTTCA TCT TGAAGGGCG ACGGGTATAAAGGGT YPA_1870 2106012 - 2106545 + | hypothetical protein YPA_1871 2106627 - 2106773 + | hypothetical protein TERM 2315 2107323 - 2107334 + G 70 -2.2 -5.03747 | GTGTGACAAAATAAC CGGT GATG ACTG TTTTTTGAGCCGTTT YPA_1872 2107036 - 2107485 + | transcription regulator AsnC YPA_1873 2107577 - 2108476 + | hypothetical protein YPA_1874 2108779 - 2108982 + | hypothetical protein TERM 2316 2109107 - 2109142 + T 91 -5.5 -5.60993 | gap 2 TGCCGGTATTTATTT GCCGGGTCTGGCCTA CCTTTTAT TGGGCCA--CCCGGC TTTTTTTATGACAGC YPA_1875 2110609 - 2109284 - | phosphoanhydride phosphorylase TERM 2317 2109892 - 2109910 + g 82 -8.1 -4.51847 | opp_overlap 2109887, overlap 2109904 TCGATGATAACGCCA GTGGCCC ACTGA GGGTCAC TTTTGTCCCTTCTTT YPA_1876 2110821 - 2110913 + | hypothetical protein YPA_1877 2111104 - 2110910 - | hypothetical protein YPA_1878 2111548 - 2111141 - | hypothetical protein YPA_1879 2111684 - 2112541 + | hypothetical protein YPA_1880 2113461 - 2115041 + | putative methyl-accepting chemotaxis protein YPA_1881 2115161 - 2115421 + | hypothetical protein TERM 2318 2115491 - 2115510 + F 79 -7.8 -4.3129 | overlap 2115492 TTCCTCAATACATTC AGCCCTCA ATAT TGAGGGCG TTTTACTGCTGCCTG TERM 2319 2115492 - 2115509 + F 84 -11.3 -3.18292 | overlap 2115491 TCCTCAATACATTCA GCCCTCA ATAT TGAGGGC GTTTTACTGCTGCCT TERM 2320 2115987 - 2115997 + G 79 -6.8 -4.72986 | CTGCCCGAGAGTTTG GCTG GAA CAGC TTTTTAGTGAACCTA YPA_1882 2115713 - 2116756 + | LacI family sucrose operon repressor TERM 2321 2116890 - 2116849 - T 100 -14.7 -3.54 | opp_overlap 2116856, overlap 2116850 2116852 2116856 AGCACGCCATAAATA GTATAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTATAG ATACGTCAGAACTAC TERM 2322 2116889 - 2116850 - T 100 -18.2 -2.71918 | opp_overlap 2116856, overlap 2116849 2116852 2116856 GCACGCCATAAATAG TATAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTATA GATACGTCAGAACTA TERM 2323 2116887 - 2116852 - T 100 -16.4 -2.90065 | opp_overlap 2116856, overlap 2116850 2116849 2116856 ACGCCATAAATAGTA TAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTA TAGATACGTCAGAAC TERM 2324 2116856 - 2116883 + T 77 -8.4 -3.92869 | opp_overlap 2116852 2116850 2116849 2116856 CATAAATAGTATAAA CTTCACGAAAGC ATAA GCCCTCGTGAAG TTTATAGATACGTCA TERM 2325 2116883 - 2116856 - T 100 -12.8 -4.12037 | opp_overlap 2116856, overlap 2116852 2116850 2116849 CATAAATAGTATAAA CTTCACGAAAGC ATAA GCCCTCGTGAAG TTTATAGATACGTCA YPA_1883 2118155 - 2116902 - | isocitrate dehydrogenase TERM 2326 2118229 - 2118251 + H 83 -12 -2.80113 | TGAATATTCGTTCCG CGCCAATCCG AAA CGGATTGGGG TATAATGCGCTAATC TERM 2327 2118357 - 2118375 + H 78 -9.5 -3.57389 | opp_overlap 2118336, overlap 2118352 2118349 AGCCAGGCAGTCCCC CCCGCTG CGCCA CGGCGGG TATTGTTATTCAATA YPA_1884 2118378 - 2118911 + | putative pseudouridine synthase TERM 2328 2119008 - 2118991 - g 70 -2.6 -5.00339 | overlap 2118992 ATCAACAATGAAAAA CGCTGG AACCAG CCAGCC GGTCATCTGGAAGCC YPA_1885 2118904 - 2119350 + | hypothetical protein TERM 2329 2119587 - 2119561 - g 82 -3.5 -5.30686 | opp_overlap 2119567, overlap 2119563 AATAGCCAGAAAAAA GTCATCGTCGG CATGT CCGGCGGTGTC GACTCTTCCGTTTCC TERM 2330 2119971 - 2119955 - g 71 -6.5 -4.13945 | opp_overlap 2119954 ATGTTGATGGTAAAA GCCGC CTACTGC GCGGC CTTGATGGAAATAAA trmU 2119537 - 2120652 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YPA_1887 2120710 - 2121336 + | hypothetical protein YPA_1888 2121397 - 2122767 + | adenylosuccinate lyase TERM 2331 2122779 - 2122824 + F 100 -13 -3.34192 | gap 1, opp_overlap 2122782 2122784, overlap 2122782 GTAATATTCTTTATC TAATACAGGTGGC-TTAGTTT GGTAA AAGCTAACGCCATCTGTATTA TTCCTTCCCCCCCTT TERM 2332 2122782 - 2122821 + F 86 -10.3 -3.81146 | gap 1, opp_overlap 2122782 2122784, overlap 2122779 ATATTCTTTATCTAA TACAGGTGGC-TTAGTTT GGTAA AAGCTAACGCCATCTGTA TTATTCCTTCCCCCC TERM 2333 2123121 - 2123101 - g 74 -6.9 -4.42386 | GTTTGACCGACAAAA TTATAGCCA TAT TGGCAATAA AAATATGGGTGGGAT YPA_1889 2122955 - 2123578 + | putative lipoprotein YPA_1890 2123789 - 2124460 + | DNA-binding transcriptional regulator PhoP TERM 2334 2125311 - 2125298 - g 76 -8.1 -4.13014 | CTCACAGCCTTAAAA CACCG CTGG CGGTG CTACAAACCACACTA YPA_1891 2124466 - 2125920 + | sensor protein PhoQ YPA_1892 2125950 - 2127125 + | hypothetical protein TERM 2335 2127338 - 2127322 - T 84 -10.8 -3.72051 | opp_overlap 2127322 GTCAATAACCTCAAA CGCCCC TTTTC GGGGCG TTTCTCTCTATCGTT TERM 2336 2127322 - 2127338 + T 93 -10.8 -4.1897 | opp_overlap 2127322 GTCAATAACCTCAAA CGCCCC TTTTC GGGGCG TTTCTCTCTATCGTT YPA_1893 2128593 - 2127358 - | peptidase T TERM 2337 2128180 - 2128190 + g 71 -6.8 -4.14739 | CGCTTTATCATCCGC CCCT AAC AGGG TTTTACCATCAGTCG YPA_1894 2129759 - 2128923 - | NAD-dependent deacetylase TERM 2338 2129796 - 2129810 + r 85 -7.2 -4.83615 | TATCTGTCTTGTTAT TAATCG TGA CGATTA TTTTTCTGCCAAATG YPA_1895 2129975 - 2129808 - | hypothetical protein YPA_1896 2130723 - 2129953 - | N-acetyl-D-glucosamine kinase TERM 2339 2130356 - 2130324 - G 70 -9.8 -3.2327 | opp_overlap 2130327, overlap 2130313 2130327 2130343 TTAACCCACCACCAA CACCGGTGCCGAGA ATAAG CCCCAGCACCGTTG GGTAAGTGCGAAACT YPA_1897 2131989 - 2130742 - | outer membrane-specific lipoprotein transporter subunit LolE TERM 2340 2131427 - 2131413 - G 70 -4.2 -4.62783 | CACTCAGTTGAAAAA TACCGG CAA CCTGTA AACGGATGCGCTTAG lolD 2132693 - 2131989 - | lipoprotein transporter ATP-binding subunit YPA_1899 2133888 - 2132686 - | outer membrane-specific lipoprotein transporter subunit LolC TERM 2341 2133414 - 2133398 - G 77 -10.1 -3.78775 | opp_overlap 2133398 CTCGGTACCATCAAA CGCAGTG TTT CACCGCG TTTAACCCCGAGCTG TERM 2342 2133833 - 2133817 - G 90 -10.1 -4.5123 | AAGCCACGAAACAAA CCGACCG AAG CGGTCAG AAGCACGCCCACGCA TERM 2343 2136133 - 2136111 - g 71 -6.3 -4.34486 | gap 1, overlap 2136108 2136113 ACCAATAATAAACAA GTGGCGGTGT TGGT AC-CCACCAC CCTGCTGGCTCAACA YPA_1900 2134158 - 2137604 + | transcription-repair coupling factor YPA_1901 2138382 - 2137843 - | hypothetical protein TERM 2344 2138511 - 2138529 + r 70 -7.3 -3.85698 | TAAAATACCGGGATA CGGCGTG CGTGA CTCGCCG TTTGTAAACACAGGG TERM 2345 2138738 - 2138717 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_1902 2139920 - 2138712 - | transposase for the IS285 insertion element YPA_1903 2140429 - 2140016 - | hypothetical protein YPA_1904 2140925 - 2140437 - | hypothetical protein TERM 2346 2141420 - 2141441 + r 95 -13.1 -3.15663 | overlap 2141436 TGCTAGCCCGCAGGG TGAGCCTCA CGAA TGAGGCTCA TTAATCCCGATGAGT YPA_1905 2142848 - 2141544 - | NADH dehydrogenase TERM 2347 2142556 - 2142568 + g 82 -7.7 -4.6313 | opp_overlap 2142555 TGTTCATCACAAATC TCAGC CAG GCTGA TTGTTTTGTTTTCAC YPA_1906 2143765 - 2143223 - | hypothetical protein YPA_1907 2144912 - 2143893 - | beta-hexosaminidase TERM 2348 2145026 - 2145014 - R 86 -7.7 -4.68919 | AAAGACAAATTAAAA CGTTG GCG CAACG GCGCGGCCCATGCCA YPA_1908 2145861 - 2144995 - | hypothetical protein TERM 2349 2145669 - 2145689 + g 76 -7.6 -4.37658 | ATTTACGCTCACGTC GTCGGTTG ACCCC CAACTGAC TTTTGTGCGGCGATT TERM 2350 2145785 - 2145811 + g 74 -11.7 -2.72568 | gap 1, opp_overlap 2145785 2145788 2145789, overlap 2145784 2145782 ACCGGGCTAATATGA CAAT-CGGCGGT TTTC ACCGCCGGATTG ATGTTTGCTATTAAG TERM 2351 2145811 - 2145785 - G 74 -11.7 -2.73994 | gap 1, opp_overlap 2145785 2145784 2145782, overlap 2145788 2145789 ACCGGGCTAATATGA CAAT-CGGCGGT TTTC ACCGCCGGATTG ATGTTTGCTATTAAG TERM 2352 2145807 - 2145788 - G 70 -9.2 -3.52073 | opp_overlap 2145785 2145784 2145782, overlap 2145785 2145789 GGGCTAATATGACAA TCGGCGGT TTTC ACCGCCGG ATTGATGTTTGCTAT TERM 2353 2145806 - 2145789 - G 76 -12.7 -2.70923 | opp_overlap 2145785 2145784 2145782, overlap 2145788 2145785 GGCTAATATGACAAT CGGCGGT TTTC ACCGCCG GATTGATGTTTGCTA YPA_1909 2146417 - 2145842 - | putative lipoprotein TERM 2354 2146489 - 2146477 - R 78 -10.5 -3.34428 | overlap 2146475 2146473 2146471 AAAAATAAATAGAGA CGCGC ACT GCGCG CATTAAAATTATTGT YPA_1910 2146847 - 2146458 - | putative lipoprotein YPA_1911 2147235 - 2146882 - | purine nucleoside phosphoramidase YPA_1912 2148227 - 2147409 - | shikimate 5-dehydrogenase TERM 2355 2148596 - 2148564 - R 100 -11.3 -4.42806 | opp_overlap 2148571, overlap 2148568 2148570 2148571 TTAGTTTGAAATAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2356 2148592 - 2148568 - R 100 -9.9 -4.78326 | opp_overlap 2148571, overlap 2148564 2148570 2148571 TTTGAAATAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2357 2148590 - 2148570 - R 100 -12.5 -3.99693 | opp_overlap 2148571, overlap 2148568 2148564 2148571 TGAAATAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2358 2148571 - 2148589 + r 100 -16 -4.8048 | opp_overlap 2148571 2148570 2148568 2148564 GAAATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2359 2148589 - 2148571 - R 100 -16 -2.98189 | opp_overlap 2148571, overlap 2148570 2148568 2148564 GAAATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_1913 2148834 - 2148670 - | hypothetical protein YPA_1914 2149629 - 2148850 - | transposase/IS protein TERM 2360 2149548 - 2149562 + g 77 -11.4 -3.3506 | overlap 2149561 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_1915 2150651 - 2149629 - | transposase for insertion sequence IS100 TERM 2361 2150673 - 2150655 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_1916 2151087 - 2150665 - | putative transposase TERM 2362 2151200 - 2151218 + r 100 -16 -4.37092 | opp_overlap 2151189 2151200 GAAAGCTTTACTGAA CCCCCAGC ATA GCTGGGGG TTTTCTGGGCACAAT TERM 2363 2151218 - 2151200 - R 100 -16 -3.07307 | opp_overlap 2151200, overlap 2151189 GAAAGCTTTACTGAA CCCCCAGC ATA GCTGGGGG TTTTCTGGGCACAAT TERM 2364 2151254 - 2151237 - R 100 -12.7 -4.30719 | opp_overlap 2151237 TCTGGGCACAATAAA GGGAGGC TTTC GCCTCCC TTTTGCTCTCCCCTA TERM 2365 2151237 - 2151254 + r 100 -12.7 -4.35116 | opp_overlap 2151237 TCTGGGCACAATAAA GGGAGGC TTTC GCCTCCC TTTTGCTCTCCCCTA YPA_1917 2152710 - 2151277 - | glucose-specific PTS system IIBC components TERM 2366 2152914 - 2152888 - R 73 -7.3 -4.15044 | opp_overlap 2152888 2152891 GTTTCTTTCAAGAAA GCACGTAATCC CTCTC GGATTTCGTAC TTTACGTAAAGAAAC YPA_1918 2153825 - 2153016 - | putative metallodependent hydrolase YPA_1919 2154862 - 2153840 - | DNA polymerase III subunit delta' TERM 2367 2154247 - 2154204 - G 71 -7.3 -4.03413 | opp_overlap 2154204 2154232, overlap 2154239 AGCCCGCTACACAAA GCGCTGCGGATACTCCAAC GCTCTG GTTGGAGCAACCGCTCAGC CGCCAGCGGTGCGCC TERM 2368 2154400 - 2154387 - G 78 -3.7 -5.17744 | overlap 2154389 2154390 AGATACCAATAAAAA CAGCG GCTA CGCAG TGTAGCCAGCAAGCT TERM 2369 2154410 - 2154389 - G 71 -6.6 -4.20491 | gap 1, overlap 2154387 2154390 ATACCAATAAAAACA GC-GGCTAC GCAGT GTAGCCAGC AAGCTGGCGGGTTGG tdk 2155500 - 2154862 - | thymidylate kinase TERM 2370 2155417 - 2155451 + g 74 -7.8 -4.18762 | gap 1, overlap 2155413 GTTAATCCCTTGGGC CCGCAGCACCGCGAC CACGGT GTCGCGG-GTGGTGG TTTTCCCTGCCCCTT YPA_1921 2156515 - 2155490 - | hypothetical protein TERM 2371 2156671 - 2156645 - R 84 -10.1 -3.8381 | gap 1, opp_overlap 2156654, overlap 2156646 2156661 AGACAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2372 2156672 - 2156646 - R 72 -10.1 -2.89563 | gap 1, opp_overlap 2156654, overlap 2156645 2156661 GACAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPA_1922 2157590 - 2156784 - | 4-amino-4-deoxychorismate lyase TERM 2373 2157928 - 2157904 - R 100 -9.9 -4.50761 | opp_overlap 2157907, overlap 2157906 2157907 ATGAATTTAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2374 2157926 - 2157906 - R 100 -12.5 -3.8535 | opp_overlap 2157907, overlap 2157904 2157907 GAATTTAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2375 2157907 - 2157925 + r 100 -16 -4.8048 | opp_overlap 2157906 2157904 2157907 AATTTAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2376 2157925 - 2157907 - R 100 -16 -2.90126 | opp_overlap 2157907, overlap 2157906 2157904 AATTTAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_1923 2158464 - 2158006 - | transposase for the IS1541 insertion element TERM 2377 2158595 - 2158577 - R 100 -16 -3.07307 | opp_overlap 2158577 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2378 2158577 - 2158595 + r 100 -16 -4.37092 | opp_overlap 2158577 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2379 2158638 - 2158610 - R 74 -9.6 -3.28712 | opp_overlap 2158615 2158617, overlap 2158615 GTTTTCTGGGCACAA TAAAAGACCCGG AAAAA CCGGGCCTTTTT AGCATCAGAACCTTA TERM 2380 2158615 - 2158633 + r 81 -7.3 -4.62069 | opp_overlap 2158610 2158615, overlap 2158617 CTGGGCACAATAAAA GACCCGG AAAAA CCGGGCC TTTTTAGCATCAGAA TERM 2381 2158633 - 2158615 - R 100 -9.5 -4.77165 | opp_overlap 2158615 2158617, overlap 2158610 CTGGGCACAATAAAA GACCCGG AAAAA CCGGGCC TTTTTAGCATCAGAA YPA_1924 2159905 - 2158664 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2382 2159975 - 2159950 - R 100 -11.9 -5.93809 | opp_overlap 2159950, overlap 2159951 TTCGGACAAAAAAAA CTTAGGCGGTC GAAT GACCGCCTAAC TATCTAAACTTAAAG TERM 2383 2159950 - 2159975 + r 86 -11.9 -2.91681 | opp_overlap 2159950 2159951 TTCGGACAAAAAAAA CTTAGGCGGTC GAAT GACCGCCTAAC TATCTAAACTTAAAG TERM 2384 2159974 - 2159951 - R 100 -15.4 -4.15201 | opp_overlap 2159950, overlap 2159950 TCGGACAAAAAAAAC TTAGGCGGTC GAAT GACCGCCTAA CTATCTAAACTTAAA acpP 2160236 - 2160000 - | acyl carrier protein fabG 2161124 - 2160390 - | 3-ketoacyl-(acyl-carrier-protein) reductase YPA_1927 2162067 - 2161138 - | malonyl CoA-acyl carrier protein transacylase YPA_1928 2163055 - 2162105 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2385 2162499 - 2162487 - G 70 -9.1 -3.63627 | overlap 2162496 TCTGGATACGGTAAA GCGAG CAA CTCGC CATAACGACCATCAG TERM 2386 2162613 - 2162588 - G 74 -9.9 -3.57263 | gap 1, opp_overlap 2162594, overlap 2162593 AGCGCCATCGCCAAA CAGAATGATCGT ACC ACGATC-TTCTG GATCCAATGCACGGG YPA_1929 2164096 - 2163062 - | putative glycerol-3-phosphate acyltransferase PlsX rpmF 2164297 - 2164130 - | 50S ribosomal protein L32 YPA_1931 2164834 - 2164310 - | hypothetical protein TERM 2387 2164528 - 2164574 + g 70 -11.6 -2.69471 | overlap 2164527 GCTCGTACGCTTCCG GTAATGCTTCAGCCTGCTCATC ATT GACGATCGGGCTGAAACAATAC GTTGTATGAACATGG YPA_1932 2164964 - 2165572 + | Maf-like protein TERM 2388 2165649 - 2165625 - T 88 -9.9 -4.21351 | opp_overlap 2165628, overlap 2165613 2165627 2165628 AAACAGTCGAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2389 2165647 - 2165627 - T 100 -12.5 -3.69469 | opp_overlap 2165628, overlap 2165625 2165613 2165628 ACAGTCGAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2390 2165646 - 2165628 - T 100 -16 -2.80958 | opp_overlap 2165628, overlap 2165627 2165625 2165613 CAGTCGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2391 2165628 - 2165646 + T 100 -16 -4.8048 | opp_overlap 2165627 2165625 2165613 2165628 CAGTCGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_1933 2166185 - 2165727 - | transposase for the IS1541 insertion element TERM 2392 2166316 - 2166298 - R 100 -16 -3.07307 | opp_overlap 2166298 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2393 2166298 - 2166316 + r 100 -16 -4.37092 | opp_overlap 2166298 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2394 2166337 - 2166359 + r 76 -11.2 -2.56836 | opp_overlap 2166337, overlap 2166336 2166335 TGGGCACAATAAAAA CGGGGCGCAT GCT GTGCCCCCCG CCTTTTATGATCATC TERM 2395 2166359 - 2166337 - R 100 -10.5 -5.18726 | opp_overlap 2166337 2166336 2166335 TGGGCACAATAAAAA CGGGGCGCA TGCTG TGCCCCCCG CCTTTTATGATCATC YPA_1934 2167367 - 2166405 - | 23S rRNA pseudouridylate synthase C TERM 2396 2166651 - 2166668 + g 70 -9.1 -3.53811 | overlap 2166650 GATTTGATGCGTCCG GCCAGTC ACTG GGCTGGC TTTAACCAGCGTGGC TERM 2397 2168544 - 2168530 - g 76 -2.7 -5.15634 | opp_overlap 2168536 2168539, overlap 2168532 GATGCGATTAAAAAA GCGGC TGAAG GTCGC CCCGCGCCCTTCTTA TERM 2398 2168536 - 2168556 + G 74 -11.1 -3.18264 | opp_overlap 2168530 2168532, overlap 2168539 ATTAAAAAAGCGGCT GAAGGTCGC CCC GCGCCCTTC TTAATCCATCAGGAA TERM 2399 2169182 - 2169202 + G 71 -6.1 -4.28791 | GTACCGGCACCGTAC GTGACAATG AAT CGCTGTCAC TTTCTATTCTGCGTT TERM 2400 2170515 - 2170529 + G 74 -7.8 -4.18018 | opp_overlap 2170508 GGCACAATCGGCCAT GCCTCT GGC AGGGGC TTTTGCCTCACCAGA TERM 2401 2170795 - 2170772 - g 80 -12.4 -3.43203 | overlap 2170769 2170768 2170766 TTATGACAACACCAA CCGTTGCGGT TGCC ACCGCAGCGG TAACACTGGCCCCAC rne 2167942 - 2171607 + | ribonuclease E YPA_1936 2171702 - 2171935 + | hypothetical protein TERM 2402 2172883 - 2172904 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_1937 2172007 - 2172909 + | putative transposase TERM 2403 2172999 - 2173044 + T 100 -15 -4.62957 | gap 1, overlap 2172990 2173005 2173006 CACTTTCTCTGGCGG TTGACATGGCCTGAGTTCGGT ACTGC ACCGGACTCAGGCCGT-TTAA TTTTACTTTGATTCT YPA_1938 2173092 - 2172976 - | ORF 2; putative TERM 2404 2173005 - 2173039 + g 100 -18.7 -4.29472 | overlap 2172990 2172999 2173006 CTCTGGCGGTTGACA TGGCCTGAGTTCGGT ACTGC ACCGGACTCAGGCCG TTTAATTTTACTTTG TERM 2405 2173006 - 2173038 + g 100 -20 -3.16056 | overlap 2172990 2173005 2172999 TCTGGCGGTTGACAT GGCCTGAGTTCGGT ACTGC ACCGGACTCAGGCC GTTTAATTTTACTTT YPA_1939 2173473 - 2173186 - | hypothetical protein YPA_1940 2173708 - 2174754 + | dihydroorotase YPA_1941 2175067 - 2175312 + | DNA damage-inducible protein I TERM 2406 2175565 - 2175587 + F 84 -5.4 -5.26875 | overlap 2175566 2175581 ACCACAATACCATTT TGCCGGGGAG TCG CTCCTCAGCC TTTTTTGCTTAAAAC TERM 2407 2175566 - 2175586 + F 78 -8.9 -3.75402 | overlap 2175565 2175581 CCACAATACCATTTT GCCGGGGAG TCG CTCCTCAGC CTTTTTTGCTTAAAA TERM 2408 2175765 - 2175744 - f 75 -7.3 -4.371 | TTGAGTATACTAAAA CAGCTCACT CGGT AATGAGCCG CATTGATCCTCGTTA TERM 2409 2176103 - 2176082 - g 77 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA bssS 2175818 - 2176114 + | biofilm formation regulatory protein BssS YPA_1943 2176604 - 2176077 - | putative transposase YPA_1944 2177286 - 2176474 - | putative transposase TERM 2410 2177437 - 2177462 + H 95 -7.7 -5.06816 | gap 1, opp_overlap 2177437 2177435 TATTACCCATAAACA GGCACCAG-TAA ATA TTATCTGGTGTC TTTTTATTAACCACT solA 2177647 - 2178762 + | N-methyltryptophan oxidase TERM 2411 2179233 - 2179212 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_1946 2180415 - 2179207 - | transposase for the IS285 insertion element YPA_1947 2180544 - 2180936 + | LuxR family regulatory protein TERM 2412 2181449 - 2181488 + T 100 -11.4 -4.37092 | overlap 2181450 TACCCCATTTTCGGT TCCTCAGGGCCGTAGG CCAATTAA CCAGTGGCCCTGAGGG TTTTCTAACCACCGT TERM 2413 2181450 - 2181487 + T 93 -12.7 -3.21934 | overlap 2181449 ACCCCATTTTCGGTT CCTCAGGGCCGTAGG CCAATTAA CCAGTGGCCCTGAGG GTTTTCTAACCACCG tqsA 2182566 - 2181508 - | putative transport protein YPA_1949 2183500 - 2182715 - | hypothetical protein YPA_1950 2183782 - 2183579 - | hypothetical protein YPA_1951 2184545 - 2184141 - | hypothetical protein YPA_1952 2184796 - 2184635 - | hypothetical protein YPA_1953 2185510 - 2184833 - | hypothetical protein TERM 2414 2185492 - 2185475 - G 71 -5.7 -4.34866 | ACCGAAGAAGACAAA CTTTTTA CTCG TAAAAAG AGAAGGACTGCGGTC YPA_1954 2185941 - 2186585 + | N-acylhomoserine lactone synthase YpeI YPA_1955 2187315 - 2186578 - | quorum-sensing transcriptional activator YpeR TERM 2415 2186768 - 2186780 + g 81 -6.3 -5.0095 | TCATTTTCCCGAGGA GAGAA AAT TTCTC TTTTATTCTCTTTTT TERM 2416 2187416 - 2187399 - R 85 -4.2 -5.52909 | CAAGATGTAAAAAAA TGTGAT CACTGC ATCACA TTCAAATTATTGACA TERM 2417 2187661 - 2187688 + r 91 -12.1 -3.47227 | opp_overlap 2187656 GCTCTATGAACTCCG CCATCTGGGTG CATTTA CATCCAGATGG TTGTGATGCTTACCC YPA_1956 2188728 - 2187802 - | LysR family transcriptional regulator TERM 2418 2189224 - 2189201 - g 84 -4.6 -5.32882 | gap 1 TACCATCAGAAAAAA TCAGGATGGAC GAT GTCC-CCCTAA ATCGCTTCCATATAA TERM 2419 2189350 - 2189323 - g 82 -11.4 -3.78409 | opp_overlap 2189318 TTAATTCAACTCAAA CCCATAATGGCA CTTA CACCATTATGGG AGGGATTACTCGGAT YPA_1957 2189176 - 2190534 + | putative transporter protein YPA_1958 2190581 - 2191084 + | hypothetical protein TERM 2420 2192088 - 2192098 + G 72 -8.2 -3.90762 | GCGCGGGAAGCTCGC CCGC CAA GCGG TATTTTTGCCCCATA YPA_1959 2191095 - 2192114 + | putative oxidoreductase TERM 2421 2192185 - 2192144 - T 71 -9.7 -2.71731 | gap 1 GTGATTCTTTAACTA TTGGCCAGTG-CAACATA AAATCAA TACGTTAACACTGGCCAA AAAGAATCAAAACCA YPA_1960 2192746 - 2192192 - | hypothetical protein YPA_1961 2193761 - 2192757 - | hypothetical protein TERM 2422 2193167 - 2193153 - G 76 -5.7 -4.62872 | ATCAACGGTGAAAAA GGCAA AACCG TTGCC CGCTAAACCTTGTTC TERM 2423 2193613 - 2193629 + g 84 -4.3 -5.34309 | overlap 2193614 2193615 TTCAACCGGTTGGAG ATGGTGC CCC GCACCGC TTTTTCTTTAATGAT YPA_1962 2194729 - 2193779 - | hypothetical protein YPA_1963 2196072 - 2194726 - | hypothetical protein YPA_1964 2199767 - 2196480 - | hypothetical protein TERM 2424 2196824 - 2196802 - G 70 -9 -3.54424 | CTGGATTGTCGGAAA GGGGTGCACC GTT GCTGCTCCCC ACTCCAGGTCGCCTG TERM 2425 2196935 - 2196947 + g 74 -7.7 -4.20454 | opp_overlap 2196935 2196934 AATCAACAAAATTAT CTCGA GGT TCGAG TTTGGTTCTTTCTTG TERM 2426 2197077 - 2197088 + g 70 -4.4 -4.67353 | TTTGCAATAAACGGG GATC GCCG GATC TTTTTGAGTCAGTGC YPA_1965 2200744 - 2199764 - | hypothetical protein TERM 2427 2201774 - 2201797 + H 74 -6.6 -4.28361 | AGGTGCCCCCCCTGC GCCCATAGCC TTTA GGCTAAGGCC TTTTAGTCAGATTGA YPA_1966 2201831 - 2203075 + | hypothetical protein TERM 2428 2203652 - 2203617 - T 86 -12 -3.14132 | opp_overlap 2203610 TGGCTGGTGTACTAA TGGTGCTCTGAAATAT AAAA ATAATTCAGAGCACCG GGGCTACTATTTACA YPA_1967 2204956 - 2203682 - | hypothetical protein TERM 2429 2204555 - 2204577 + g 73 -6.2 -4.59207 | opp_overlap 2204559 TGCACGCCATGTCCA CCAATTTGGC TCC GCCACACTGG TTTTATACTCTTTAT TERM 2430 2204748 - 2204731 - G 80 -3.3 -5.252 | overlap 2204732 GACGTTGATAAAAAA TTGCCGC GCGG GCGACAT CATCAATGGCGGATA YPA_1968 2206116 - 2204995 - | hypothetical protein TERM 2431 2205371 - 2205388 + g 70 -8.5 -3.75332 | opp_overlap 2205374 ATACCGACGTGCACA TTATCGG CGAC CCGATAA TTTACATTAACAAGT TERM 2432 2205557 - 2205571 + g 87 -4.2 -5.52986 | overlap 2205555 CCAATATTGTTATCG CCGC CTGTCGT GCGG TTTTTTTCGTAGCCT TERM 2433 2205754 - 2205743 - G 78 -3.6 -5.14563 | TGCTTGAGTAAAAAA CCGG TATT CCAG CCCGTATCGCCAAAA TERM 2434 2206170 - 2206185 + r 76 -2.6 -5.38047 | overlap 2206167 2206171 GGGAACTCCACCCAA TCTAAT TGAT ATTAGG TTTTTTCTATAAATC YPA_1969 2207171 - 2206233 - | hypothetical protein YPA_1970 2208253 - 2207198 - | hypothetical protein TERM 2435 2208281 - 2208302 + r 83 -8.7 -4.16943 | opp_overlap 2208280 2208281 TATAAATAGCAATAT CGTGGTGAG TCAT TTCACCGCG TTTTCGAGTATCAAA YPA_1971 2209224 - 2208400 - | sugar ABC transporter, permease protein YPA_1972 2210100 - 2209225 - | sugar ABC transporter, permease protein TERM 2436 2210040 - 2210012 - G 70 -2.5 -4.90778 | gap 1, opp_overlap 2210020, overlap 2210020 GCGAGCCAAATAAAA GGATAAAACCAG AATATG CTGGTAT-ATCC CAGATAAGAGGCCGC YPA_1973 2211495 - 2210209 - | putative solute-binding protein TERM 2437 2211582 - 2211608 + H 70 -3.7 -4.79451 | opp_overlap 2211582 2211583 2211585, overlap 2211577 2211585 GCGTAATTTCGATAA TGATGTGAAGT ATTTC ACATCTCATCA TTTTATGTTTAACGT YPA_1974 2211767 - 2212807 + | LacI family transcriptional regulator YPA_1975 2212824 - 2214212 + | phosphomannomutase TERM 2438 2214285 - 2214252 - f 100 -14.7 -4.93177 | overlap 2214256 TAAAAACTAATAAAA TCAACCTCGCGTTCA TTAT TGAACGCGAGGGTAA ATAGCAGCATATTGT TERM 2439 2214281 - 2214256 - f 100 -17.7 -3.84772 | overlap 2214252 AACTAATAAAATCAA CCTCGCGTTCA TTAT TGAACGCGAGG GTAAATAGCAGCATA YPA_1976 2214312 - 2215391 + | putative mannitol transport ATP-binding protein YPA_1977 2215644 - 2215519 - | hypothetical protein YPA_1978 2216186 - 2215656 - | hypothetical protein YPA_1979 2216956 - 2216459 - | hypothetical protein YPA_1980 2217415 - 2217011 - | hypothetical protein TERM 2440 2217258 - 2217282 + g 70 -2.2 -4.98255 | gap 2 TTCTCTGTACAGATT GACC-AGC-TAG TCT CTGTGCTCGGTC TTTTTCTCGTTCCGC YPA_1981 2217724 - 2217557 - | hypothetical protein TERM 2441 2217882 - 2217911 + r 95 -12.9 -3.16055 | gap 1, opp_overlap 2217886 2217887, overlap 2217870 2217887 ATCTTAGAGTTTGAA GCAAGCCCCAGCCA AAT TGGCCGGG-CTTGC TTCATCACGGGTTTC TERM 2442 2217907 - 2217886 - R 71 -8.7 -3.35371 | gap 1, opp_overlap 2217882 2217870 2217887, overlap 2217887 TAGAGTTTGAAGCAA GCCCCAGCCA AAT TGGCCGGG-C TTGCTTCATCACGGG YPA_1982 2218124 - 2217927 - | hypothetical protein YPA_1983 2220167 - 2218134 - | hypothetical protein TERM 2443 2218173 - 2218185 + g 73 -3.3 -5.00616 | overlap 2218174 GTTAGAAATATACTT ACCTG TTT CAGGA TTTTTTACACCAAAG TERM 2444 2220230 - 2220277 + r 100 -22.4 -3.18264 | gap 1 TATCGCTAGGCCCAA TGCCGATCAGTTAAGGATC-GGT TGA ACGAGATCCTTAACTGATCGGCA TTGCTGCATAGCAGG TERM 2445 2220341 - 2220309 - R 93 -12.1 -3.58726 | opp_overlap 2220312, overlap 2220312 GTTTTCTATAGACAA TAATTATCCTCCGGC ATA GTCGGGGGATAATTA TTCAAGGTTTAGGAT TERM 2446 2220338 - 2220312 - R 83 -9.4 -3.92996 | opp_overlap 2220312, overlap 2220309 TTCTATAGACAATAA TTATCCTCCGGC ATA GTCGGGGGATAA TTATTCAAGGTTTAG TERM 2447 2220312 - 2220338 + r 100 -13.8 -3.66772 | opp_overlap 2220312 2220309 TTCTATAGACAATAA TTATCCTCCGGC ATA GTCGGGGGATAA TTATTCAAGGTTTAG TERM 2448 2220558 - 2220544 - R 93 -2.8 -5.95539 | TCCTAAACAAAAAAA TACAGC CCA ACCGTA TAAGATAGCTAATAT YPA_1984 2221082 - 2220831 - | hypothetical protein YPA_1985 2221836 - 2221327 - | hypothetical protein TERM 2449 2221843 - 2221855 + r 71 -3.3 -5.02715 | overlap 2221844 CATATCCATATTATT TCACC TTC GGTGC TTTTTGGTTTGGTAT YPA_1986 2229385 - 2221838 - | putative hemolysin TERM 2450 2228603 - 2228617 + g 73 -9.2 -3.69092 | CACGGTTGGCCGCGG GCTGCC ATC GGCGGC TTTGGCGTTAATGTT YPA_1987 2231277 - 2229589 - | putative hemolysin activator protein YPA_1988 2232895 - 2231930 - | putative dioxygenase beta subunit TERM 2451 2232269 - 2232284 + g 80 -10.4 -3.69395 | ACCGCGTTGTGTTGC CGCCGT TTTA ACGGCG TTATTCAATGATACC TERM 2452 2232672 - 2232696 + g 100 -16.5 -3.53091 | GAATGCTCACTCAGG CGCACCGCTAT TTG GTAGCGGTGCG TTTCAAAAGGAGAAT TERM 2453 2232979 - 2232955 - R 100 -14.3 -3.54951 | TACGCTATCAGAGAA GACCCACAGCG GCT CACTGTGGGCC ATAATAATAGGCTAC YPA_1989 2234115 - 2232991 - | putative dioxygenase alpha subunit YPA_1990 2235713 - 2234232 - | putative transporter TERM 2454 2236263 - 2236229 - R 78 -10 -3.45031 | overlap 2236224 2236231 TTCTCAAAAAGTTAA TAGGCATTCGTCCGAT TAA AACGGACGCATACCCA AACCCGCCAACGCAG TERM 2455 2236261 - 2236231 - R 78 -10.4 -3.2916 | overlap 2236229 2236224 CTCAAAAAGTTAATA GGCATTCGTCCGAT TAA AACGGACGCATACC CAAACCCGCCAACGC TERM 2456 2236369 - 2236395 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2236358, overlap 2236364 2236370 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2457 2236370 - 2236396 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2236358, overlap 2236364 2236369 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPA_1991 2237592 - 2236495 - | tartrate dehydrogenase YPA_1992 2237683 - 2238624 + | LysR family transcriptional regulator TERM 2458 2238736 - 2238722 - f 74 -4.2 -5.08088 | AACGTGGAATAAAAA CTCAGG ACG CTTGAG AGGTAAAAATTACCC YPA_1993 2238871 - 2239875 + | LacI family transcriptional regulatory protein YPA_1994 2241000 - 2240008 - | putative sugar transport system, permease protein YPA_1995 2242487 - 2240997 - | putative sugar transport system, ATP-binding protein YPA_1996 2243444 - 2242527 - | sugar binding protein precursor YPA_1997 2244389 - 2243619 - | putative zinc-binding dehydrogenase YPA_1998 2244523 - 2244419 - | hypothetical protein TERM 2459 2244892 - 2244875 - g 76 -6.9 -4.57837 | ACATGTCGTTAAAAA CGGTGCC ATTA GGCATCG CTGTAGCACTGGAAT TERM 2460 2245229 - 2245240 + G 73 -5.8 -4.57755 | TCTTGCCCATTGCAC TGGC CGTC GCCA TTTTGTCTACTGCAT YPA_1999 2244589 - 2245476 + | threonine and homoserine efflux system YPA_2000 2245492 - 2245989 + | hypothetical protein TERM 2461 2246630 - 2246640 + G 70 -8.2 -3.65991 | overlap 2246629 TGGCTGCGGGCAACG GGGC TAC GCCC TTATCTTGCCCCCCT YPA_2001 2246012 - 2246788 + | trans-aconitate 2-methyltransferase YPA_2002 2247045 - 2247548 + | DNA starvation/stationary phase protection protein Dps TERM 2462 2247599 - 2247583 - f 79 -10.8 -3.04792 | opp_overlap 2247583 CTATTACGCTGAACA GGGCCG TTAAC CGGCCC TGCTTGCCGCCCTCC TERM 2463 2247583 - 2247599 + F 76 -10.8 -2.71364 | opp_overlap 2247583 CTATTACGCTGAACA GGGCCG TTAAC CGGCCC TGCTTGCCGCCCTCC TERM 2464 2248493 - 2248463 - g 78 -13.4 -2.65354 | opp_overlap 2248460, overlap 2248460 2248459 2248468 CGCAGTTGAAAGCGA CCCAAGGCGAAAAT GCG ATTGTCACCTTGGG CTATGCGTTAAATCC YPA_2003 2247868 - 2248995 + | hypothetical protein glnH 2249565 - 2250308 + | glutamine ABC transporter periplasmic protein glnP 2250343 - 2250999 + | glutamine ABC transporter permease protein TERM 2465 2251318 - 2251308 - gT 79 -6.8 -4.63218 | overlap 2251309 TTTGGCCCAACAAAA GTGC GTG GCAC ATCCAAGGAAGAGGC glnQ 2250909 - 2251718 + | glutamine ABC transporter ATP-binding protein TERM 2466 2251825 - 2251797 - T 95 -13.2 -3.05997 | opp_overlap 2251797, overlap 2251792 TGGCTAGAAATCACA CTGGCGGACATC TTACT GATACCCGCCAG TTTTTTATAGGCTAT TERM 2467 2251797 - 2251825 + T 100 -8.8 -5.26918 | opp_overlap 2251792 2251797 TGGCTAGAAATCACA CTGGCGGACATC TTACT GATACCCGCCAG TTTTTTATAGGCTAT YPA_2007 2253256 - 2251958 - | putative chemotactic transducer TERM 2468 2252118 - 2252130 + g 71 -6.3 -4.39989 | overlap 2252109 ATCGCGGCGGTAACC CCATT CTG AATGG TTTTAGTCATTTGCT TERM 2469 2253293 - 2253311 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2008 2253315 - 2254337 + | transposase for insertion sequence IS100 TERM 2470 2254418 - 2254404 - g 77 -11.4 -3.3506 | overlap 2254395 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2009 2254337 - 2255116 + | transposase/IS protein TERM 2471 2255381 - 2255355 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2255363, overlap 2255354 2255370 2255371 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGAA TGGCGCGGTTCG AGCCTACATGGATGT YPA_2010 2255695 - 2255796 + | hypothetical protein YPA_2011 2256988 - 2255978 - | putative SAM-dependent methyltransferase TERM 2472 2256895 - 2256909 + g 91 -4.2 -5.63517 | overlap 2256897 AGCAATGACGATTTC GGGGAT GCA ATCCGC TTTTTTCTTTGGGGA YPA_2012 2257276 - 2257536 + | hypothetical protein YPA_2013 2257685 - 2257527 - | hypothetical protein TERM 2473 2257702 - 2257680 - G 91 -9.1 -4.78848 | CTTGGAAATACAAAA GCCCATCCG TTCAT CTGATGGGC TCAGACTGCTGACAA TERM 2474 2257791 - 2257765 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 2257774, overlap 2257766 2257781 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2475 2257792 - 2257766 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 2257774, overlap 2257765 2257781 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2476 2257870 - 2257892 + r 100 -9.1 -4.93296 | TTGTCAATAACCTCA GCCCATCCG TTCAT CTGATGGGC TTTTTCTGGTGGTGA YPA_2014 2258877 - 2257918 - | hypothetical protein YPA_2015 2260358 - 2258943 - | O-succinylbenzoic acid--CoA ligase TERM 2477 2259202 - 2259190 - G 73 -3.3 -4.93661 | ACAGGAATAACAAAA GCGTG CTG CACCC CTGAATACTGCAATA YPA_2016 2261317 - 2260346 - | O-succinylbenzoate synthase YPA_2017 2262174 - 2261317 - | naphthoate synthase TERM 2478 2261614 - 2261637 + g 78 -2.3 -5.24129 | GGCATCATATTGGCG GCACAGGAA CCAAAT TTCCCGCGC TTTTTTCTGGCCGAC YPA_2018 2263006 - 2262188 - | acyl-CoA thioester hydrolase YfbB TERM 2479 2262251 - 2262236 - G 72 -4 -4.84359 | gap 1, overlap 2262238 TGACTGTGACAAAAA TGC-CAG CAC CTGTGCA GCAAAAGCACCGGGA YPA_2019 2264706 - 2263003 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YPA_2020 2266307 - 2264934 - | menaquinone-specific isochorismate synthase TERM 2480 2265079 - 2265113 + g 70 -9.2 -3.6502 | TGCTGCCCATCGACT CGCGCTGAACGCAGGG CCA CACTGAATTCAGTGCG TTTAAGTGACAAATA YPA_2021 2267473 - 2266829 - | hypothetical protein YPA_2022 2268336 - 2268028 - | hypothetical protein YPA_2023 2268520 - 2268687 + | hypothetical protein YPA_2024 2268861 - 2269043 + | hypothetical protein YPA_2025 2271133 - 2269262 - | phosphogluconate dehydratase TERM 2481 2269757 - 2269773 + g 71 -5.7 -4.4078 | AATAACCTGATGCTC CCGTGGC ACT GCCGAGG TTTTCATTACCGCCC TERM 2482 2269848 - 2269836 - G 73 -3.3 -4.91109 | CCCTGAGCAGAAAAA GGCTG TTC CAGAC TGGCGATCACCGTCG YPA_2026 2271658 - 2271143 - | hypothetical protein YPA_2027 2273004 - 2271688 - | putative sugar transporter TERM 2483 2272181 - 2272143 - G 89 -10.3 -4.40333 | gap 1, overlap 2272145 2272173 CGGAAATAACATAAA TACCGGCGGTGGTAGCCA CAAA TGGCAAC-ACCGCCAGAA TACCGACGGATGCCA TERM 2484 2272179 - 2272145 - G 85 -12.9 -3.79177 | gap 1, overlap 2272143 2272173 GAAATAACATAAATA CCGGCGGTGGTAGCCA CAAA TGGCAAC-ACCGCCAG AATACCGACGGATGC TERM 2485 2273291 - 2273320 + r 76 -10.8 -2.50195 | overlap 2273290 2273288 ATAATTTTCGATTGA CGCGTCAGATAA ACTTTA TTTTCTGACGCG CTATTACTCATGGAT TERM 2486 2273357 - 2273344 - R 70 -5.3 -4.50058 | CATGGATAACTAAAA TCACT AAAG AGTGA TTGAGGTTATTGACA TERM 2487 2273436 - 2273462 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2273425, overlap 2273431 2273437 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2488 2273437 - 2273463 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2273425, overlap 2273431 2273436 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPA_2028 2274500 - 2273550 - | putative D-isomer specific 2-hydroxyacid dehydrogenase family protein TERM 2489 2274736 - 2274719 - R 80 -2.7 -5.44721 | overlap 2274722 ACCATGTTAAAAAAA CATGTTA CCGG TAACGTG ACCAGCTTATCATTA TERM 2490 2274962 - 2274934 - R 73 -5.3 -4.72272 | opp_overlap 2274939, overlap 2274939 CGTGGTGATGAAAAA TAACAGGAAACCG AAT CGACTTCCCTTTA GTCTCAGATAGTCCC TERM 2491 2274957 - 2274939 - R 70 -7.4 -3.84027 | opp_overlap 2274939, overlap 2274934 TGATGAAAAATAACA GGAAACCG AAT CGACTTCC CTTTAGTCTCAGATA YPA_2029 2275958 - 2274966 - | LacI family transcriptional regulatory protein TERM 2492 2276094 - 2276113 + H 80 -10.6 -3.5511 | overlap 2276093 CGGCAGTTACACCGT CGGGAGGG GATG CCCGCCCG TATTTCTCAATGGCA YPA_2030 2276427 - 2277710 + | putative lipoprotein TERM 2493 2278355 - 2278329 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2278338, overlap 2278330 2278345 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2494 2278356 - 2278330 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2278338, overlap 2278329 2278345 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPA_2031 2278364 - 2279233 + | gluconate 5-dehydrogenase TERM 2495 2279430 - 2279418 - g 100 -9.1 -5.1615 | overlap 2279420 CCAATATCCAAAAAA TGGCC GCC GGCCA GCCACTGAACGATCA YPA_2032 2279282 - 2279818 + | putative thermosensitive gluconokinase YPA_2033 2279896 - 2280363 + | hypothetical protein YPA_2034 2281877 - 2280687 - | hypothetical protein TERM 2496 2282066 - 2282039 - R 100 -14.2 -5.23292 | opp_overlap 2282034 CCAGATAAAACAAAA CCCCCTGTAAGC CGAT ACTCACAGGGGG TAGGGTCTATCTCGA YPA_2035 2283576 - 2282113 - | NADH dehydrogenase subunit N YPA_2036 2285115 - 2283583 - | NADH dehydrogenase subunit M TERM 2497 2284907 - 2284895 - G 70 -9.1 -3.61536 | AATCTAATGCCGAAA CGTGG GAT CCACG GCACATTATAATATG YPA_2037 2286999 - 2285155 - | NADH dehydrogenase subunit L TERM 2498 2286055 - 2286034 - G 72 -8.1 -3.87815 | gap 1 GCCCAGCGCCAGAAA CATGTAGCCA ATC TGGCT-CATG GTGGAGTACGCCAAC YPA_2038 2287298 - 2286996 - | NADH dehydrogenase subunit K YPA_2039 2287840 - 2287295 - | NADH dehydrogenase subunit J YPA_2040 2288395 - 2287853 - | NADH dehydrogenase subunit I YPA_2041 2289387 - 2288410 - | NADH dehydrogenase subunit H YPA_2042 2292128 - 2289384 - | NADH dehydrogenase subunit G TERM 2499 2290252 - 2290242 - G 70 -8.2 -3.67173 | opp_overlap 2290235, overlap 2290232 ATAAACCTGGAAGAA GCGC TGT GCGC GGCCTTCCTGATTGA YPA_2043 2293600 - 2292215 - | NADH dehydrogenase I subunit F TERM 2500 2293471 - 2293481 + g 86 -8.2 -4.7373 | ACGCTTTTTCTGCCC CGGC ATA GCCG TTTTTGCTGCGATAC YPA_2044 2294160 - 2293597 - | NADH dehydrogenase subunit E TERM 2501 2294133 - 2294145 + g 70 -3.3 -4.75372 | CAAGGCTTCCGTTAT GAGCC TGA GTCTC TTTTTGATCACTCAT YPA_2045 2295959 - 2294163 - | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 2502 2295862 - 2295852 - G 79 -8.2 -4.30719 | TGCTTGCACAACAAA GGCC TCT GGCC CAAAACGGTTCGACA YPA_2046 2296777 - 2296100 - | NADH dehydrogenase subunit B YPA_2047 2297379 - 2296879 - | NADH dehydrogenase subunit A TERM 2503 2297561 - 2297540 - R 74 -10.3 -2.57211 | overlap 2297539 ACTCCTTTCGATAAC CTTTTGTCA ACTT TGACAAAAG TAACTACACATTAAT TERM 2504 2297705 - 2297717 + r 70 -7.7 -3.65522 | ACTATACCATTGTCT CAGGA ATA TCCTG TTCTTCCACTCAGTA TERM 2505 2297718 - 2297742 + r 78 -2.2 -5.52384 | gap 1, overlap 2297720 CTCAGGAATATCCTG TTCT-TCCACT CAGT AGTGGACAGTA TTTTTTTGATCCAGG YPA_2048 2298998 - 2298057 - | LysR family transcriptional regulator TERM 2506 2300727 - 2300715 - g 80 -10.5 -3.6608 | overlap 2300693 AGCATGCGATTCAAA CCGCC TTG GGCGG CTATCAGAGCATTAG YPA_2049 2299853 - 2301067 + | aminotransferase AlaT YPA_2050 2301218 - 2301811 + | hypothetical protein TERM 2507 2301814 - 2301841 + T 100 -15.8 -3.28924 | TTCACTGGATTGATC TTTATAGCCTGC TTGT GCAGGCTATAAA TTATGACAAGAGATA TERM 2508 2302021 - 2302011 - T 71 -6.8 -4.15222 | ATTTTCGGCAAGAAA CTGC TCA GCAG TCATCGCATGAACAT YPA_2051 2304046 - 2302154 - | putative ion transport protein TERM 2509 2304214 - 2304198 - R 100 -9.4 -5.42131 | opp_overlap 2304197 TAACGATACAAAAAA GGTGCC GTCGA GGCACC CTACTATTGGCTTAT YPA_2052 2304934 - 2304278 - | putative phosphatase YPA_2053 2305593 - 2305099 - | hypothetical protein YPA_2054 2306348 - 2305893 - | hypothetical protein TERM 2510 2306234 - 2306215 - G 76 -7.8 -4.37534 | opp_overlap 2306214 2306215 AAACGGATACCAAAA CGGGTCAC TACC GTGACACG ATTCTCGGGGAACAC YPA_2055 2306770 - 2307972 + | acetate kinase TERM 2511 2308261 - 2308230 - g 72 -3.7 -4.7497 | overlap 2308232 TCCATGGAGCAAAAA GGGGTAAGCTTGA GCGTAT TCAAGCCTATCGC CCAGCCACGTGCGGG YPA_2056 2308140 - 2310293 + | phosphate acetyltransferase TERM 2512 2310385 - 2310411 + T 72 -10.1 -2.84602 | gap 1, opp_overlap 2310374, overlap 2310380 2310386 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCCCTGCC TERM 2513 2310386 - 2310412 + T 84 -10.1 -3.74872 | gap 1, opp_overlap 2310374, overlap 2310380 2310385 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCCCTGCCT TERM 2514 2310471 - 2310502 + T 79 -10.9 -3.05463 | opp_overlap 2310477, overlap 2310477 GGGTTTGTCAGCAGT CTGAAACGCCAGC CTCTGC GCTGGCGTTTTTG TTACATCAGACACGT TERM 2515 2310477 - 2310496 + T 100 -10.7 -5.10461 | opp_overlap 2310477, overlap 2310471 GTCAGCAGTCTGAAA CGCCAGC CTCTGC GCTGGCG TTTTTGTTACATCAG TERM 2516 2310496 - 2310477 - T 84 -10.7 -3.58343 | opp_overlap 2310477 2310471 GTCAGCAGTCTGAAA CGCCAGC CTCTGC GCTGGCG TTTTTGTTACATCAG TERM 2517 2310536 - 2310522 - T 75 -7.1 -4.26589 | opp_overlap 2310521 2310529 ATCAGACACGTAAAA CAGGG AGCCG CCCTG CATTCTGGGGCGGTT TERM 2518 2310529 - 2310549 + T 87 -8.2 -4.50358 | opp_overlap 2310522, overlap 2310521 ACGTAAAACAGGGAG CCGCCCTG CATTC TGGGGCGG TTTTCCTCTTTAGGT YPA_2057 2311593 - 2310559 - | LacI family transcriptional regulator TERM 2519 2310918 - 2310937 + g 81 -6.4 -4.93296 | overlap 2310912 TGGCCGCATCGGGCG TGGTGACC GTTT GGTCAGCA TTTTTGTAATGCTCG TERM 2520 2311869 - 2311835 - H 100 -15.2 -3.9712 | opp_overlap 2311859, overlap 2311853 2311854 TCATGGCATGACAAA TGATAGCGCTATCACA AAT TTTGATAGCGCTACCA GATAGCGCTATCAAT TERM 2521 2311885 - 2311853 - H 77 -8.5 -3.96624 | opp_overlap 2311859, overlap 2311835 2311854 TAGCGCTATCACAAA TTTTGATAGCGCTAC CAG ATAGCGCTATCAATT GAGATCCAGATCACA TERM 2522 2311884 - 2311854 - H 86 -12 -2.97653 | opp_overlap 2311859, overlap 2311835 2311853 AGCGCTATCACAAAT TTTGATAGCGCTAC CAG ATAGCGCTATCAAT TGAGATCCAGATCAC TERM 2523 2311859 - 2311879 + H 70 -9.8 -2.53876 | opp_overlap 2311835 2311854 2311853 TATCACAAATTTTGA TAGCGCTA CCAGA TAGCGCTA TCAATTGAGATCCAG YPA_2058 2311960 - 2312403 + | phosphotransferase enzyme II, A component YPA_2059 2312572 - 2312859 + | hypothetical protein ulaA 2312872 - 2314128 + | ascorbate-specific PTS system enzyme IIC TERM 2524 2314159 - 2314176 + T 100 -12.7 -3.62572 | AAGACGTCACCATCA CCCCCTC CTTG GAGGGGG TTTAAACTGATAATA TERM 2525 2314197 - 2314221 + T 100 -6.4 -5.7946 | opp_overlap 2314197 ACTGATAATAAAAAA CCAAAGCGCT TTAGC GGGGCTTTGG TTTTTTTATTGAGCA TERM 2526 2314221 - 2314197 - T 90 -5.7 -5.56673 | opp_overlap 2314197 ACTGATAATAAAAAA CCAAAGCGC TTTAGCG GGGCTTTGG TTTTTTTATTGAGCA YPA_2061 2314793 - 2314245 - | hypothetical protein YPA_2062 2315566 - 2315015 - | phosphodiesterase TERM 2527 2315522 - 2315512 - G 71 -6.8 -4.15543 | overlap 2315514 CAAAGATCGCCAAAA CACG TTC CGTG GCCGGTAACGAACCA YPA_2063 2316446 - 2315754 - | hypothetical protein TERM 2528 2316580 - 2316592 + H 100 -4.1 -6.47325 | GTTGAGCGGTTTATT GAGTC CCT GATTC TTTTTTTTATTTTTT YPA_2064 2316800 - 2317708 + | hypothetical protein YPA_2065 2318629 - 2317832 - | histidine/lysine/arginine/ornithine transporter subunit YPA_2066 2319359 - 2318643 - | histidine transport system permease protein HisM TERM 2529 2319091 - 2319073 - G 83 -3.1 -5.42259 | CCACTGCGAAAAAAA GCATTGA GCAGA TCATTGC CTCGGATTATCTCCA YPA_2067 2320042 - 2319356 - | histidine transport system permease protein HisQ TERM 2530 2319668 - 2319656 - G 88 -10.5 -4.21922 | opp_overlap 2319653 2319656 GGAGGTAAAACCAAA GGCCG TCG CGGCC TCAATTTGCCCTTTA YPA_2068 2320927 - 2320145 - | histidine-binding periplasmic protein TERM 2531 2321204 - 2321222 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2069 2321226 - 2322248 + | transposase for insertion sequence IS100 TERM 2532 2322329 - 2322315 - g 77 -11.4 -3.3506 | overlap 2322306 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2070 2322248 - 2323027 + | transposase/IS protein TERM 2533 2323247 - 2323218 - T 90 -7.1 -5.18995 | overlap 2323219 AACAGAATACAAAAA CCCTACTACAGCA CCAT CGCTGTTGCAGGA TCATTGTGGAGCATA TERM 2534 2323246 - 2323219 - T 73 -8.4 -3.68957 | overlap 2323218 ACAGAATACAAAAAC CCTACTACAGCA CCAT CGCTGTTGCAGG ATCATTGTGGAGCAT YPA_2071 2323983 - 2323411 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 2535 2324152 - 2324123 - R 90 -7.2 -5.15167 | gap 2, opp_overlap 2324123 CACCATGAATAAAAA GGTGC-ACC-GCGC CTAA ACGCAGGTTGCACC TTTTTGGCTCATTCT TERM 2536 2324123 - 2324152 + r 77 -6.5 -4.71382 | gap 2, opp_overlap 2324123 CACCATGAATAAAAA GGTGCA-CC-GCG CCTAAA CGCAGGTTGCACC TTTTTGGCTCATTCT TERM 2537 2324172 - 2324191 + r 76 -10.8 -2.57344 | overlap 2324171 2324174 TGGCTCATTCTGTTT TATGACGG ATAC CCGTCATA CTTCTACCCGCCATA YPA_2072 2325747 - 2324230 - | amidophosphoribosyltransferase YPA_2073 2326269 - 2325760 - | colicin V production protein TERM 2538 2326078 - 2326068 - G 79 -6.8 -4.71426 | opp_overlap 2326067 TCGCGATGAACAAAA TGCC GAT GGCA ATTCCGTTGCGAACA YPA_2074 2327303 - 2326581 - | hypothetical protein TERM 2539 2326823 - 2326835 + g 80 -4.7 -5.06414 | opp_overlap 2326819, overlap 2326822 GGACAACATAAGCCT GCCCC ACT GGCGC TTTTTCTTCCACCGG TERM 2540 2326880 - 2326901 + g 79 -5.1 -5.05113 | GCTTAGGTTTCACTT CCAGCGG TTTTTTCT CTGCTGG TTTTGTTTCTATCGG YPA_2075 2328727 - 2327423 - | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase TERM 2541 2328703 - 2328679 - G 90 -13.5 -3.93262 | opp_overlap 2328671 2328666 GCTCAAGATAGCAAA GCCACGCGGCC AAA GGCGACGTGGC TTGGGGAGTTTGATG TERM 2542 2328966 - 2328938 - R 76 -10.4 -2.90804 | gap 1, opp_overlap 2328938, overlap 2328937 ATAAGGCACAATAAC CGGGCACCA-TCT TACA AGAGTGATGCCCG TTGAGTTAATCAGAC YPA_2076 2329890 - 2328976 - | acetyl-CoA carboxylase subunit beta TERM 2543 2330011 - 2329975 - R 78 -2.2 -5.4505 | gap 1, overlap 2329986 2329988 CTCTCCAATAAAAAA TGCCTGAGATACA-CGC CAGT GCGACGTGGCTAAGGCA CCGAAACTTGGATTG YPA_2077 2330783 - 2330121 - | hypothetical protein TERM 2544 2330985 - 2330964 - R 73 -5.1 -4.58395 | overlap 2330970 GTCATCCGCCAAAAA CAAAGGCCC CATA GGAACTTTG GGTAACGCGAAGTGG truA 2331821 - 2330940 - | tRNA pseudouridine synthase A TERM 2545 2331736 - 2331752 + g 91 -6.5 -5.1356 | opp_overlap 2331736 AACGCAATTTTCAAA CCGGC CACTTCT GCCGG TTTTTCTTGCTGAGC YPA_2079 2332831 - 2331821 - | putative semialdehyde dehydrogenase TERM 2546 2331957 - 2331993 + g 71 -10.7 -3.11459 | opp_overlap 2331955 2331957 CGAACGCAACCAATA CTCAGGGCATCGCTGCC GGA GGCGTCGCTGACCTGGG TTGGATAATCATCTT TERM 2547 2332939 - 2332961 + r 80 -9.1 -4.0257 | opp_overlap 2332941, overlap 2332931 2332941 ACGTTATTGAACAGC AAGGGCGGT AACAC ACCGCCCTG TTATTAATTTTTACG TERM 2548 2332959 - 2332941 - R 95 -12.4 -3.38072 | opp_overlap 2332939 2332931 2332941 GTTATTGAACAGCAA GGGCGGTA ACA CACCGCCC TGTTATTAATTTTTA TERM 2549 2332941 - 2332959 + r 90 -11.7 -3.58785 | opp_overlap 2332941, overlap 2332939 2332931 GTTATTGAACAGCAA GGGCGGT AACAC ACCGCCC TGTTATTAATTTTTA YPA_2080 2334188 - 2333001 - | erythronate-4-phosphate dehydrogenase YPA_2081 2334960 - 2334175 - | AraC family transcriptional regulator YPA_2082 2335186 - 2336103 + | hypothetical protein YPA_2083 2336388 - 2337425 + | flagella biosynthesis regulator TERM 2550 2337527 - 2337498 - T 93 -10.9 -4.22132 | opp_overlap 2337504, overlap 2337504 TTAAATACAAAAATA CAAAAAGCGACTA ATAT CAGTCGCTTTTTA ACAAACCGCTTACGC TERM 2551 2337521 - 2337504 - T 100 -7.7 -5.38398 | opp_overlap 2337504, overlap 2337498 ACAAAAATACAAAAA GCGACTA ATAT CAGTCGC TTTTTAACAAACCGC TERM 2552 2337504 - 2337521 + T 76 -7 -4.56597 | opp_overlap 2337498 2337504 ACAAAAATACAAAAA GCGACT AATATC AGTCGC TTTTTAACAAACCGC TERM 2553 2337741 - 2337695 - T 75 -10.5 -2.87564 | gap 1, opp_overlap 2337707 2337728 2337734, overlap 2337681 2337707 TCATTCTTTTATACA GCATATAAAAAAGCATGCAGAA TATC TTCCACATGCTTTTTT-TAAGC AATTTAGACAGCTTA TERM 2554 2337707 - 2337730 + T 84 -3.8 -5.41746 | opp_overlap 2337681 2337695 2337707, overlap 2337728 ACAGCATATAAAAAA GCATGCAGAA TATC TTCCACATGC TTTTTTTAAGCAATT TERM 2555 2337730 - 2337707 - T 100 -8.2 -5.40625 | opp_overlap 2337707 2337728, overlap 2337681 2337695 ACAGCATATAAAAAA GCATGCAGAA TATC TTCCACATGC TTTTTTTAAGCAATT YPA_2084 2338297 - 2337767 - | hypothetical protein TERM 2556 2339011 - 2339050 + H 72 -9.2 -3.14344 | gap 1 TCACTTATAACGTGG GGGC-GCTGTCGCCCTTCA AGA TGCAGGGAGTTAGCTGCCC TTGCTCACCCCAGTC YPA_2085 2339085 - 2339780 + | putative aspartate/glutamate racemase TERM 2557 2339953 - 2339934 - T 100 -12.2 -5.24003 | AATAAAAAGTAAAAA GCCTACGA TCTC TCGTAGGC TTCAGACTGCTGACA TERM 2558 2340043 - 2340017 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2340026, overlap 2340018 2340033 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2559 2340044 - 2340018 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2340026, overlap 2340017 2340033 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2560 2340148 - 2340117 - T 90 -11.6 -3.62046 | opp_overlap 2340123 GCACTTTGTCAATAA CCTCAAGCCTACGA TCTC TCGTAGGCTTTGGG GAGTAAATCTGAATC TERM 2561 2340123 - 2340142 + T 91 -12.2 -3.55761 | opp_overlap 2340117 TGTCAATAACCTCAA GCCTACGA TCTC TCGTAGGC TTTGGGGAGTAAATC YPA_2086 2341411 - 2340188 - | 3-oxoacyl-(acyl carrier protein) synthase I TERM 2562 2342871 - 2342857 - g 76 -5.7 -4.65916 | GCTAGCGCAACAAAA TGGCA TGACC TGCCA CTACCAACATGAACT mnmC 2341583 - 2343652 + | 5-methylaminomethyl-2-thiouridine methyltransferase YPA_2088 2344108 - 2343830 - | hypothetical protein YPA_2089 2344708 - 2344166 - | hypothetical protein TERM 2563 2344586 - 2344573 - G 82 -6.7 -4.77438 | overlap 2344576 AGCCATGAGCAAAAA TCACC CGAT GGTGA GGAGATTCTTCATCG TERM 2564 2344762 - 2344734 - R 82 -10.3 -3.66883 | GTAAGAGAGGGTAAA CACCGCTAAAGTC ACC GTATTTAGCGGTG GTGGGTGCCTAAATT YPA_2090 2345614 - 2344808 - | hypothetical protein TERM 2565 2345530 - 2345500 - G 74 -11.1 -3.04263 | gap 1, overlap 2345519 ATCCCACCGCTAACA GTGCGGGGACGGTT AACA AGCCGCCCCCGC-C GGCAATGGAATCAAT mepA 2346406 - 2345618 - | penicillin-insensitive murein endopeptidase TERM 2566 2346319 - 2346297 - G 70 -9.1 -3.57462 | GACTCGAGCGGCAAA GGCTGCGCG CCAAT CACGCAACC ATTAGCAAAGCCACC YPA_2092 2347536 - 2346451 - | chorismate synthase YPA_2093 2348545 - 2347613 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YPA_2094 2348834 - 2349445 + | hypothetical protein TERM 2567 2349794 - 2349775 - T 100 -15 -3.8579 | AGCCAATAAGCGAAA GCGCGGCA AGAA TGCCGCGC CAGTTAGACGTTGAT YPA_2096 2350354 - 2349863 - | phosphohistidine phosphatase fadJ 2353247 - 2350923 - | multifunctional fatty acid oxidation complex subunit alpha TERM 2568 2351681 - 2351698 + g 71 -7 -4.21827 | AGAACCCAGCGCGAT CAGCCA CCACAA TGGCTG TTTTACCCTGTTTCC TERM 2569 2351848 - 2351823 - G 71 -11.2 -2.78813 | overlap 2351808 2351806 2351822 2351846 GTGCAGGCCAATAAC CTGCTCTGGC CGTTGC GCCAAAGCAG CAATCTGGCTGATGG TERM 2570 2352498 - 2352469 - G 71 -5.1 -4.47456 | gap 1, overlap 2352471 ATACGGAATAATAAA GC-TTTACCCAACG GCC CACTGAGTAAACGC TCCTGCCATGGTAAT fadI 2354557 - 2353247 - | 3-ketoacyl-CoA thiolase TERM 2571 2353480 - 2353509 + g 75 -9.3 -3.85698 | opp_overlap 2353479 2353477 CGCGAGCAAAAGTAT CACTGGCAAACAT TTTC AGGTTAGCCAGTG TTTGTGCGGCGAAGG TERM 2572 2354621 - 2354609 - R 79 -7.7 -4.34559 | AAAGATAACAAATAA CAGGT CTG ACCTG ATCCGAACATTGTTA TERM 2573 2354787 - 2354807 + r 93 -12.6 -3.18239 | opp_overlap 2354787 CATCTAAAGTAATAA CGCGAAGC AAAAG GCTTCGCG TTGGTCAGGTATGTA TERM 2574 2354807 - 2354787 - R 100 -12.6 -3.90425 | opp_overlap 2354787 CATCTAAAGTAATAA CGCGAAGC AAAAG GCTTCGCG TTGGTCAGGTATGTA YPA_2099 2355140 - 2354844 - | hypothetical protein YPA_2100 2355554 - 2356819 + | long-chain fatty acid outer membrane transporter TERM 2575 2356847 - 2356874 + T 100 -17.2 -4.18018 | opp_overlap 2356847 2356849 2356854, overlap 2356854 CATCACCTTATCCAA TAGAAAAGCGCC TGAT GGCGCTTTTCTA TTTTGAATACGGCGG TERM 2576 2356874 - 2356847 - T 100 -17.2 -3.07113 | opp_overlap 2356847 2356854, overlap 2356849 2356854 CATCACCTTATCCAA TAGAAAAGCGCC TGAT GGCGCTTTTCTA TTTTGAATACGGCGG TERM 2577 2356872 - 2356849 - T 100 -15.4 -3.09327 | opp_overlap 2356847 2356854, overlap 2356847 2356854 TCACCTTATCCAATA GAAAAGCGCC TGAT GGCGCTTTTC TATTTTGAATACGGC TERM 2578 2356867 - 2356854 - T 100 -9.5 -4.68724 | opp_overlap 2356854 2356847, overlap 2356849 2356847 TTATCCAATAGAAAA GCGCC TGAT GGCGC TTTTCTATTTTGAAT TERM 2579 2356854 - 2356867 + T 100 -9.5 -4.90471 | opp_overlap 2356849 2356847 2356854, overlap 2356847 TTATCCAATAGAAAA GCGCC TGAT GGCGC TTTTCTATTTTGAAT YPA_2101 2357690 - 2356926 - | VacJ lipoprotein TERM 2580 2357716 - 2357733 + r 78 -5.6 -4.88895 | ATGAAAGTCTGTCTA TCCCTT TCACTT AAGGGA TTTGTTTATTTATTT YPA_2102 2358952 - 2357726 - | putative cytochrome c-type biogenesis protein YPA_2103 2359464 - 2358952 - | putative cytochrome c-type biogenesis protein YPA_2104 2360027 - 2359461 - | thiol:disulfide interchange protein DsbE YPA_2105 2361994 - 2360024 - | putative cytochrome c-type biogenesis protein TERM 2581 2360977 - 2360995 + g 74 -8.1 -4.09685 | gap 1 CTTCATGCTGAGTCC GGCTGCGC ACCT GCGC-GCC TTTTACCGCATACAG YPA_2106 2362485 - 2361991 - | cytochrome c-type biogenesis protein CcmE YPA_2107 2362784 - 2362482 - | putative heme exporter protein D TERM 2582 2362742 - 2362731 - G 76 -5.8 -4.61868 | overlap 2362733 GAGCCAGACATAAAA GGCA TAGT TGCC CATGGCAAAAAATTC YPA_2108 2363518 - 2362781 - | putative heme exporter protein C YPA_2109 2364240 - 2363581 - | heme exporter protein B YPA_2110 2364866 - 2364210 - | cytochrome c biogenesis protein CcmA TERM 2583 2364837 - 2364823 - GR 73 -5.6 -4.42464 | overlap 2364825 AACTGCTGAAATAAA CAGCGA TCA TCGCGG ATACAGGTCAGATTT YPA_2111 2365778 - 2365311 - | hypothetical protein TERM 2584 2366066 - 2366080 + H 74 -7.8 -3.91364 | opp_overlap 2366063 2366066 TCGAACCAGTAACTA GCCCTT AGG AGGGGC TTGTTATATCCGTTT YPA_2112 2366394 - 2366936 + | hypothetical protein TERM 2585 2368026 - 2368008 - gf 70 -2.4 -5.04265 | AAAAAAGAGTAAAAA CAAAAGCC CAT GGGTTTTA AACAGCCGCGATGAA YPA_2113 2366881 - 2368980 + | hypothetical protein TERM 2586 2369068 - 2369091 + F 90 -2.4 -5.94214 | gap 1 GGTATCAGTTCGATG TGT-CCGTCAC TCG GTGTTGGGACA TTTTTTTATTCTATT TERM 2587 2369289 - 2369273 - f 75 -2.3 -5.38326 | TTAATTAAATAAAAA GTGTA AAATGCA TACAC ATCAATACAGTAACC YPA_2114 2369356 - 2369697 + | hypothetical protein TERM 2588 2369707 - 2369735 + T 78 -8.9 -3.83921 | opp_overlap 2369706 2369707 AGCTAATGCATTAAT GGGTTCTTTGC CACCCAA GCAGAGAGCCC TTCTATTATCTTGGA YPA_2115 2370137 - 2369772 - | hypothetical protein YPA_2116 2370623 - 2370144 - | hypothetical protein TERM 2589 2370597 - 2370608 + g 89 -2.2 -5.80951 | overlap 2370599 ACGCTCTAACAACGC CGGT AAAA ACTG TTTTTTCTTTTCCAT YPA_2117 2371526 - 2370720 - | hypothetical protein YPA_2118 2372394 - 2371546 - | hypothetical protein YPA_2119 2372654 - 2372394 - | hypothetical protein TERM 2590 2372699 - 2372733 + r 89 -11.4 -3.44377 | opp_overlap 2372697 2372695 2372693 2372691, overlap 2372698 GAAAAATCAGAGACC GCATGCTCTACGTGTG TTT CCCACGCAGAACATGC TTACCTTTTATCTAT YPA_2120 2375591 - 2372745 - | hypothetical protein TERM 2591 2372798 - 2372808 + g 74 -8.2 -4.07133 | overlap 2372793 2372801 TGTTCGCGTCGGTTC CGGC GGT GCCG TTGTTTCTGGCGGTG TERM 2592 2372837 - 2372862 + g 77 -8.9 -4.07133 | overlap 2372819 2372855 TGCCGTTGTTTCTGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCTGGCGGTG TERM 2593 2372873 - 2372898 + g 77 -8.9 -4.07133 | overlap 2372855 2372891 TGCCGTTGTTTCTGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCTGGCGGTG TERM 2594 2372909 - 2372934 + g 75 -8.9 -3.9122 | overlap 2372891 2372927 TGCCGTTGTTTCTGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2595 2372927 - 2372952 + g 75 -8.9 -3.9122 | overlap 2372909 2372945 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2596 2372945 - 2372970 + g 75 -8.9 -3.9122 | overlap 2372927 2372963 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2597 2372963 - 2372988 + g 77 -8.9 -4.07133 | overlap 2372945 2372981 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCTGGCGGTG TERM 2598 2372999 - 2373024 + g 70 -8.9 -3.59202 | overlap 2372981 2373017 TGCCGTTGTTTCTGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTCTCTGGCGGTG TERM 2599 2373068 - 2373078 + g 72 -8.2 -3.9122 | overlap 2373054 2373071 CGGTGCCGTGGTTTC CGGC GGT GCCG TTGTTTCCGGCGGTG TERM 2600 2373071 - 2373096 + g 75 -8.9 -3.9122 | overlap 2373054 2373068 2373089 TGCCGTGGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2601 2373089 - 2373114 + g 75 -8.9 -3.9122 | overlap 2373071 2373107 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2602 2373107 - 2373132 + g 75 -8.9 -3.9122 | overlap 2373089 2373125 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2603 2373125 - 2373150 + g 77 -8.9 -4.07133 | overlap 2373107 2373143 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCTGGCGGTG TERM 2604 2373284 - 2373313 + g 73 -11.3 -2.90813 | overlap 2373282 2373284 2373300 2373300 2373301 2373301 CGGTGCCGTGGTTTC CGGCGGTGCCGTG GTTT CGCGGCGGTGCCG TGGTTTCCGGCGGTG TERM 2605 2374028 - 2374015 - G 70 -8.1 -3.65351 | TTATTTTTAGTCAAA CGCGA CATA TCGCG CTCGGCCTGTTCCCA YPA_2121 2379712 - 2375885 - | hypothetical protein TERM 2606 2376105 - 2376119 + g 72 -10 -3.36492 | opp_overlap 2376103 CGAAAAAGAATATCG GGCATC GCG GATGCC TTCTGGCGTTGGGCC TERM 2607 2376584 - 2376595 + g 70 -4.4 -4.69559 | AATCGCTTTGGACGT GTGA GTAA TCAC TTTATTTTCAAATTT TERM 2608 2376913 - 2376940 + g 79 -5.6 -5.05782 | overlap 2376919 CTTTAATCAGTTTAT TTTCACGAAACG CGAT CGTTTCTTGTAA TTTTTTAGCCTGGCT TERM 2609 2377948 - 2377983 + g 71 -7 -4.14739 | gap 1, opp_overlap 2377959 GTAACTGCTGTGTCG CGTTCAATAACGCAGGT AAG ATCTGC-TCATTGGACG TTTTGGCATAACTCA TERM 2610 2379312 - 2379326 + g 73 -6.4 -4.58663 | opp_overlap 2379312 TGCTTAATGAAGTTA TCCAGT AAC GCTGGA TTTTTCGCCAATGCT TERM 2611 2379513 - 2379503 - G 74 -8.2 -4.05446 | overlap 2379504 GGCGGCAATGACAAA GCGC GGT GCGC CGTACCAAAAACCTA YPA_2122 2380557 - 2379721 - | putative OmpA family protein YPA_2123 2381352 - 2380573 - | transposase/IS protein TERM 2612 2381271 - 2381285 + g 77 -11.4 -3.3506 | overlap 2381284 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_2124 2382374 - 2381352 - | transposase for insertion sequence IS100 TERM 2613 2382396 - 2382378 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_2125 2383056 - 2382388 - | hypothetical protein TERM 2614 2383029 - 2383013 - G 79 -9.4 -4.25104 | CTGCTTCTATCAAAA GGAGGC ATTGA GCCTCC AAGGTTCAAATCACT YPA_2126 2384402 - 2383053 - | hypothetical protein TERM 2615 2383142 - 2383158 + g 82 -3.6 -5.31456 | overlap 2383143 CAGCATTGGAAACTT TGTCCC AGAAG GGGCCA TTTTTTATCAATTCA YPA_2127 2384966 - 2384406 - | hypothetical protein TERM 2616 2385193 - 2385171 - R 100 -12 -4.72497 | opp_overlap 2385171 CACTTATTAAGAAAA CCTGCCACCC CAA AGGTGGCAAG TTTGATAGCGACATG TERM 2617 2385171 - 2385193 + r 75 -9.1 -3.72893 | opp_overlap 2385171 CACTTATTAAGAAAA CCTGCCACC CCAAA GGTGGCAAG TTTGATAGCGACATG YPA_2128 2385788 - 2385219 - | hypothetical protein TERM 2618 2385551 - 2385541 - G 76 -5.4 -4.8622 | TGTGCGAAGCAAAAA TCTG AAA CAGA GGCTTTACCTGAACC YPA_2129 2387532 - 2386030 - | hypothetical protein TERM 2619 2387248 - 2387262 + g 70 -8.6 -3.75024 | CCCACGCCATGCGCT TTCCAG AGA CTGGAA TTCTTGGTGGTGCAA YPA_2130 2388080 - 2387556 - | hypothetical protein YPA_2131 2388793 - 2388185 - | fimbrial protein YPA_2132 2389968 - 2388778 - | putative outer membrane fimbrial usher porin TERM 2620 2389290 - 2389280 - G 76 -8.2 -4.15565 | TTGATGATGGCAAAA GGCG CAT CGCC AAGTCGTGGGCCCGC TERM 2621 2391175 - 2391196 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_2133 2389993 - 2391201 + | transposase for the IS285 insertion element YPA_2134 2392773 - 2391223 - | hypothetical protein TERM 2622 2391736 - 2391749 + g 70 -8.1 -3.78312 | CAGTTCAAAGGCTCC CGGTG TGAC CACCG TTTCATAAATAATTT YPA_2135 2393662 - 2392901 - | putative pili chaperone protein TERM 2623 2393708 - 2393757 + r 73 -10.1 -2.98493 | gap 1, opp_overlap 2393711 2393715, overlap 2393705 2393711 GCAGACTTATCTTTA TAACAGACTTGCTACCGCAGCG TTTTATC CGCCTCGGCAGCAAG-CTGTTA TGCTTTACTGCTGCG TERM 2624 2393754 - 2393711 - R 89 -11.8 -3.31461 | gap 1, opp_overlap 2393711 2393708 2393705, overlap 2393715 GACTTATCTTTATAA CAGACTTGCTACCGCAGCG TTTTATC CGCCTCGGCAGCAAG-CTG TTATGCTTTACTGCT TERM 2625 2393751 - 2393715 - R 93 -12.3 -3.17622 | opp_overlap 2393711 2393708 2393705, overlap 2393711 TATCTTTATAACAGA CTTGCTACCGCAGCG TTTTATC CGCCTCGGCAGCAAG CTGTTATGCTTTACT YPA_2136 2394364 - 2393819 - | frimbrial protein TERM 2626 2394408 - 2394439 + r 84 -3.8 -5.52096 | opp_overlap 2394408 GATTTATTAAATATA TAGTTAATATTCGC TCAT GCCAATACTAGCTA TTTTTTATTGCCTTT YPA_2137 2397240 - 2394565 - | Clp ATPase TERM 2627 2395827 - 2395839 + g 70 -9.1 -3.54424 | overlap 2395833 2395836 TCAACTGCTCAGTAC GCGCA TCC TGCGC TTTACCAAAGTGCCG YPA_2138 2398023 - 2399903 + | hypothetical protein TERM 2628 2400092 - 2400047 - g 74 -7.5 -4.26076 | gap 1 CCAGCGCCAGGAAAA GCGC-CCTTGCCTGAACAGGAA GCC TTCCGCATCGGGCAAAGTGCGC ACATGACGTTCTCTC YPA_2139 2399903 - 2400928 + | hypothetical protein TERM 2629 2401774 - 2401754 - g 70 -9.7 -3.29511 | TTGATGCCGCGATAA CCCCGATAG CGC CTATCGTGG TGCCGATCCCAGAAG YPA_2140 2401027 - 2402208 + | hypothetical protein TERM 2630 2402422 - 2402410 - g 76 -5.5 -4.85599 | CCTATCCTAGAAAAA GTGGC ACA ACCAC AAGGTTTGGCAGTAA TERM 2631 2402546 - 2402528 - g 70 -9.6 -3.23853 | overlap 2402526 TTTTTGCAACGAATA TCGATGGC ATT GCCATCAA ACCTGCATGGAATAA YPA_2141 2402215 - 2403246 + | putative fimbrial protein TERM 2632 2404295 - 2404282 - gf 89 -2.4 -5.75342 | opp_overlap 2404282 GCGGGTGAAAAAAAA GTGA GTTTCT TCAC TGATCTTCCCACATC TERM 2633 2404365 - 2404355 - gf 100 -5.4 -5.7946 | GTGTGAATAAAAAAA CACT AAA AGTG GAAAAGAAAGAGGTG YPA_2142 2403286 - 2404623 + | hypothetical protein YPA_2143 2404569 - 2405303 + | hypothetical protein TERM 2634 2405395 - 2405409 + G 76 -7.2 -4.34912 | opp_overlap 2405394 ATTTTAAGGGAAATG CGTTAT GGA ATAACG TTATTTTCATTACTT TERM 2635 2406191 - 2406173 - g 85 -3.8 -5.40072 | overlap 2406175 CTGGCTGGAAAAAAA GTTTGGCA TCA TACCAAGC TTAGCCTCAACCTTG YPA_2144 2405304 - 2406986 + | hypothetical protein YPA_2145 2406983 - 2407465 + | hypothetical protein TERM 2636 2407479 - 2407516 + T 83 -12.2 -2.73994 | opp_overlap 2407482, overlap 2407476 AATTTTTGAGCGATA TCACGTCATGCTAAAT AACCCG ACTTAGCATGACGTGG TCGTATTGGAAGAAT TERM 2637 2407513 - 2407482 - T 88 -12.5 -2.64616 | opp_overlap 2407479 2407476 TTTTGAGCGATATCA CGTCATGCTAAAT AACCCG ACTTAGCATGACG TGGTCGTATTGGAAG YPA_2146 2408425 - 2407823 - | LuxR family regulatory protein TERM 2638 2409642 - 2409670 + r 100 -11.7 -4.8083 | opp_overlap 2409642 ATATCGTTAAGAAAA GAGGGCGGCATAA CCC TAATGCAGCCCTC TTTTTCATGCTATTG TERM 2639 2409670 - 2409642 - R 100 -11.7 -4.65078 | opp_overlap 2409642 ATATCGTTAAGAAAA GAGGGCGGCATAA CCC TAATGCAGCCCTC TTTTTCATGCTATTG YPA_2147 2410774 - 2409680 - | murein hydrolase B TERM 2640 2410682 - 2410665 - G 80 -3.3 -5.26875 | opp_overlap 2410667, overlap 2410666 2410667 GGCTCAAGCAAAAAA CCGCCCT GAAC AGGGCTA TCTGACGGGGTTGCA TERM 2641 2411605 - 2411568 - g 79 -11.3 -3.54543 | gap 1, overlap 2411558 2411580 ATGGACCTGGCGAAA CCAGAGTGGAAAGGCCGC TGG GCAGC-TTCCCCCTCCGG TGCTGACTTCCAGGC YPA_2148 2411103 - 2412122 + | iron(III)-binding periplasmic protein TERM 2642 2412135 - 2412149 + F 71 -8.5 -3.53091 | TAATCCGTTTTACTC CGCCC CCTGC GGGCG TTTAACAAACCGAGT TERM 2643 2412526 - 2412536 + G 74 -6.8 -4.386 | GCAATAGCACCACTG GCAG TAC CTGC TTTTGTACAAAGTTA TERM 2644 2412584 - 2412598 + G 73 -3.4 -4.99035 | overlap 2412585 TCCCCTCAATGAATG GGCTGG CCG CCGGCG TTTTTATCTCGGTGA TERM 2645 2412897 - 2412912 + G 72 -8.2 -3.90464 | CGCCGCTAACATGCT GGCGGG AGTA CTCGCC TTATGTTGTTTGGGG TERM 2646 2413545 - 2413557 + G 70 -9.1 -3.50737 | overlap 2413541 TGCTCCCGGCGCCGC TGCGG GTG CCGCA TTAGTCTTTCTGGCT YPA_2149 2412178 - 2413764 + | iron(III)-transport system permease YPA_2150 2413761 - 2414810 + | iron(III)-transport ATP-binding protein YPA_2151 2415398 - 2414883 - | hypothetical protein TERM 2647 2415695 - 2415670 - H 79 -10.7 -3.00986 | overlap 2415667 AACCACATTAAATTA TGTTTTGTTTT AAAA AAAACAAAACA CTCACCATTATAATT YPA_2152 2415868 - 2416353 + | hypothetical protein TERM 2648 2416362 - 2416381 + T 85 -9.3 -4.11346 | GTATTAATTTATTCG GGGATGG CCTACA CCATCCC TTATTATTTACGTGT YPA_2153 2417431 - 2416583 - | hypothetical protein TERM 2649 2419655 - 2419645 - g 86 -3.2 -5.63012 | AAAAATAAAGAAAAA CTGG ATA CCAA TATTAAGTTTCTCTG TERM 2650 2419731 - 2419755 + G 74 -4.3 -4.75288 | TAAAACCAATACTAT TTTGCAAGATG AGT CATTGTGCGAA TTTATTTTGGTCTGG YPA_2154 2418262 - 2420688 + | putative dimethyl sulfoxide reductase chain A protein YPA_2155 2420700 - 2421317 + | putative dimethyl sulfoxide reductase chain B protein YPA_2156 2421319 - 2422095 + | putative dimethyl sulfoxide reductase chain C protein TERM 2651 2422131 - 2422150 + F 77 -6.4 -4.60487 | overlap 2422134 TTCCATGTGGTGATT TACCCGCT GATT AGCGGCTA TTTTTGCGGCTAATC YPA_2157 2422453 - 2423049 + | hypothetical protein YPA_2158 2423046 - 2423615 + | putative iron-sulphur protein TERM 2652 2423653 - 2423666 + T 71 -6.7 -4.13767 | ACTGCACCTTATTCA GTTGG GTAT CCAAC TTTTGGGGTGCAGCC YPA_2159 2424517 - 2423861 - | putative lipoprotein TERM 2653 2424256 - 2424266 + g 73 -3.2 -4.93288 | overlap 2424265 TAATATCACCCGCGT TGGT CAT GCCA TTTTGTTTAAATGTT YPA_2160 2424915 - 2424514 - | putative lipoprotein YPA_2161 2425568 - 2424897 - | putative lipoprotein YPA_2162 2426158 - 2426589 + | hypothetical protein YPA_2163 2427208 - 2426684 - | putative B-type cytochrome YPA_2164 2428688 - 2427453 - | aminotransferase TERM 2654 2428148 - 2428117 - G 100 -7.4 -5.40474 | gap 1, opp_overlap 2428122 ACTCGCTCAAAAAAA TCCAACTCAACA-CA TTG CGCTGTTGGGTTGGA TGGAAAACCGAGGAT TERM 2655 2428247 - 2428222 - G 87 -4.7 -5.40474 | AGCTCGCCAAAAAAA TCAATGCCTTC GGTC AACGGCACTGA ACGCACTTGCGCACC TERM 2656 2428733 - 2428751 + H 70 -7.4 -3.88787 | overlap 2428735 2428750 ACCGTCCGAGCGACG CTGACCAT CAG ATGGTCTG TTTATGAACATATCC TERM 2657 2428735 - 2428749 + H 71 -8.6 -3.53174 | overlap 2428733 CGTCCGAGCGACGCT GACCAT CAG ATGGTC TGTTTATGAACATAT TERM 2658 2429198 - 2429188 - g 73 -3.2 -4.91429 | AAAGCGCAAATAAAA CAAC GCG GCTG TTGTGCCATTCTCGG TERM 2659 2429480 - 2429454 - g 70 -9.4 -3.59293 | opp_overlap 2429454, overlap 2429450 GCAAACCGAAAGCAA CGGTAAGCAACA TTT TGATGCTAACCG TGTCGTCACCTATGC TERM 2660 2430169 - 2430159 - g 70 -3.2 -4.77438 | AGCCACCATCAAAAA CCTC ACT GAGA TAGGTAAACAGCAGT YPA_2165 2428954 - 2430201 + | hypothetical protein TERM 2661 2430217 - 2430247 + T 84 -9.8 -3.78934 | opp_overlap 2430219 CCTTCTTCCGCATCA TATCTGCCGGAA CTTATCC TCCCGGCAGATA TTCTTCTGCGCCCAC TERM 2662 2430245 - 2430219 - T 75 -10.2 -2.78384 | opp_overlap 2430217 TTCTTCCGCATCATA TCTGCCGGAA CTTATCC TCCCGGCAGA TATTCTTCTGCGCCC glk 2431250 - 2430279 - | glucokinase TERM 2663 2430726 - 2430740 + g 71 -7.8 -3.98981 | opp_overlap 2430725 CTCCTGGCGCAATAC GGCCAG AAT CTGGTC TTCTTCTTCACTATT YPA_2167 2431907 - 2431431 - | hypothetical protein TERM 2664 2432832 - 2432821 - g 100 -7.2 -5.40072 | overlap 2432823 TTTGGTCGAAAAAAA GCCC ACCG GGGC CTGCTGGCTATTGGC YPA_2168 2432010 - 2432888 + | LysR family transcriptional regulator YPA_2169 2433024 - 2434013 + | putative ion channel protein YPA_2170 2434184 - 2434597 + | hypothetical protein TERM 2665 2434633 - 2434623 - T 71 -6.8 -4.16016 | opp_overlap 2434624 TCATCGCTCAATAAA GCCT GTC AGGC GGGTTTTCATGGAAT YPA_2171 2435919 - 2434690 - | manganese transport protein MntH TERM 2666 2435151 - 2435141 - G 82 -8.2 -4.56914 | overlap 2435142 CCATTGAAATGAAAA GCCG CAG CGGC GGTTGCCATCATCGC TERM 2667 2436004 - 2436018 + H 90 -5.8 -5.5112 | ATCAAGCGCATTTGT GATAAT GGA ATTATC TTTTTTGTTAGTAGA YPA_2172 2436370 - 2437554 + | nucleoside permease TERM 2668 2437580 - 2437593 + F 84 -3.7 -5.4492 | opp_overlap 2437580 ACGATCGCTTAACGA GGCGC TACG GCACC TTTTTTGTATCTATA gltX 2438668 - 2440083 + | glutamyl-tRNA synthetase TERM 2669 2440108 - 2440126 + F 100 -12.4 -5.24129 | TTTTCCGTGTTATCA GGCGGCCA CTC TGGTCGCC TTTTTTGTGCCCAGA TERM 2670 2440163 - 2440145 - f 100 -16 -4.36914 | opp_overlap 2440145 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2671 2440145 - 2440163 + F 100 -16 -3.07307 | opp_overlap 2440145 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_2174 2440276 - 2440734 + | transposase for the IS1541 insertion element TERM 2672 2440808 - 2440840 + F 95 -11.3 -3.86252 | opp_overlap 2440815, overlap 2440812 2440814 2440815 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTATATTTGATAACA TERM 2673 2440812 - 2440836 + F 100 -9.9 -4.53047 | opp_overlap 2440815, overlap 2440808 2440814 2440815 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTATATTTGAT TERM 2674 2440814 - 2440834 + F 100 -12.5 -3.85554 | opp_overlap 2440815, overlap 2440812 2440808 2440815 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTATATTTG TERM 2675 2440815 - 2440833 + F 100 -16 -2.89706 | opp_overlap 2440815, overlap 2440814 2440812 2440808 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTATATTT TERM 2676 2440833 - 2440815 - f 100 -16 -4.8048 | opp_overlap 2440814 2440812 2440808 2440815 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTATATTT TERM 2677 2441106 - 2441134 + F 100 -14.7 -3.16068 | opp_overlap 2441111 2441113, overlap 2441113 AGCTCCACCACCCTT TAAAAGACCGGCC TTT GGCCGGTTTTTTG CTTTTCAGTTCCGAC TERM 2678 2441129 - 2441111 - f 91 -10.2 -4.10161 | opp_overlap 2441106 2441113, overlap 2441113 CACCACCCTTTAAAA GACCGGCC TTT GGCCGGTT TTTTGCTTTTCAGTT TERM 2679 2441113 - 2441127 + F 100 -12.8 -5.46698 | opp_overlap 2441113 2441111, overlap 2441106 CCACCCTTTAAAAGA CCGGCC TTT GGCCGG TTTTTTGCTTTTCAG TERM 2680 2441127 - 2441113 - f 100 -12.8 -3.64716 | opp_overlap 2441106 2441113, overlap 2441111 CCACCCTTTAAAAGA CCGGCC TTT GGCCGG TTTTTTGCTTTTCAG TERM 2681 2441393 - 2441404 + G 73 -5.8 -4.44245 | opp_overlap 2441384, overlap 2441391 2441390 ATTAAACCAGTGGTG CCTG GCGG CAGG TTTTGTCCGTAATCT YPA_2175 2441295 - 2441900 + | hypothetical protein TERM 2682 2442220 - 2442209 - g 70 -2.2 -5.03945 | GAAGAATTACAAAAA CAGC AGCA ACTG ATTGAGACCCAAATT YPA_2176 2442032 - 2442379 + | hypothetical protein YPA_2177 2442695 - 2442480 - | hypothetical protein ligA 2444727 - 2442715 - | NAD-dependent DNA ligase LigA TERM 2683 2443943 - 2443925 - G 70 -2.4 -4.91511 | opp_overlap 2443938 ATTTGACGATAAAAA GCAATAAC CTG ATCACTGC CAGTGCAGAGTTTCA TERM 2684 2444235 - 2444208 - G 70 -3.2 -4.82901 | CTTGTGGCATAAAAA CCTCGCCACGGA CTTC TACGCGCCGCGG GACATTATCCCCATG TERM 2685 2444767 - 2444751 - R 100 -10.8 -5.5762 | opp_overlap 2444746 ACCAAAGATAAAAAA CCCCCG GCATG CGGGGG TTCGGGTTAATTCGA YPA_2179 2445804 - 2444818 - | cell division protein ZipA TERM 2686 2445318 - 2445330 + g 70 -4.8 -4.59773 | overlap 2445308 GCTGTTGTGGAGCCA CCTG ATGTG CAGG TTTTTCCACATGCGG YPA_2180 2446053 - 2446673 + | hypothetical protein YPA_2181 2446616 - 2446786 + | hypothetical protein TERM 2687 2446798 - 2446816 + F 100 -14.6 -3.97139 | ATGATCATTTTCGGT GGGCGTGT CTA ACACGCCC TTGTTATTGGGATTA TERM 2688 2447152 - 2447134 - g 84 -13.2 -3.41073 | overlap 2447132 GACCGCAGGCAAAGA GCTGGTTG AAC CAACCAGC GGGAATACAGGTGTT YPA_2182 2446943 - 2447911 + | cysteine synthase A TERM 2689 2447966 - 2447931 - f 100 -16.4 -3.74693 | opp_overlap 2447941 2447946, overlap 2447941 GGCTACCGCACTAAA TGCAAAAAAAGCACCC TTTG GGGTGCTTTTTTTGTA GAGTACATCAAAGTT TERM 2690 2447941 - 2447956 + F 100 -10.4 -5.626 | opp_overlap 2447931 2447941, overlap 2447946 CTAAATGCAAAAAAA GCACCC TTTG GGGTGC TTTTTTTGTAGAGTA TERM 2691 2447956 - 2447941 - f 100 -10.4 -5.58209 | opp_overlap 2447941 2447946, overlap 2447931 CTAAATGCAAAAAAA GCACCC TTTG GGGTGC TTTTTTTGTAGAGTA YPA_2183 2448410 - 2448667 + | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) TERM 2692 2449782 - 2449771 - g 81 -5.8 -5.00196 | GCCGAAAGAAGAAAA CCCA TTCC TGGG CTGGCGTGCTATTCG TERM 2693 2450043 - 2450064 + G 70 -10.3 -3.01712 | opp_overlap 2450048, overlap 2450048 TCGCTCGCCATTTAG CTAAAGAAG TTGA CTTCTTTAG TATTGGGACAAACGA YPA_2184 2448716 - 2450443 + | phosphoenolpyruvate-protein phosphotransferase TERM 2694 2450574 - 2450540 - g 82 -3.5 -5.34555 | opp_overlap 2450542 TCAGATGATAAAAAA GACAGCAGTGTTATT GAGAT AGTTGCACCGCTGTC TGGTGAAATCGTCAA YPA_2185 2450492 - 2451001 + | glucose-specific PTS system component TERM 2695 2451066 - 2451042 - T 93 -9.9 -4.34488 | opp_overlap 2451045, overlap 2451044 2451045 GATACCGATAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2696 2451064 - 2451044 - T 100 -12.5 -3.76888 | opp_overlap 2451045, overlap 2451042 2451045 TACCGATAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2697 2451063 - 2451045 - T 100 -16 -2.8541 | opp_overlap 2451045, overlap 2451044 2451042 ACCGATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2698 2451045 - 2451063 + T 100 -16 -4.8048 | opp_overlap 2451044 2451042 2451045 ACCGATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2186 2451602 - 2451144 - | transposase for the IS1541 insertion element TERM 2699 2451733 - 2451715 - R 100 -16 -3.07307 | opp_overlap 2451715 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2700 2451715 - 2451733 + r 100 -16 -4.36914 | opp_overlap 2451715 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2701 2451753 - 2451770 + r 100 -10.5 -4.25104 | opp_overlap 2451753 CTGGGCACAAAAAAA CGGCGCT CAAG GGCGCCG TTTTGCTGCCGGCCA TERM 2702 2451770 - 2451753 - R 100 -9.8 -5.60993 | opp_overlap 2451753 CTGGGCACAAAAAAA CGGCGC TCAAGG GCGCCG TTTTGCTGCCGGCCA YPA_2187 2453221 - 2451872 - | putative two-component system sensor kinase TERM 2703 2452984 - 2452938 - G 73 -11 -2.91239 | opp_overlap 2452938 2452940, overlap 2452973 2452975 GAGAGAGCCGATATA TCTTTTTCTGCCGTATCTGCCA TCT CGGCAGGTAAGACAGAAAAATA TTTTTTGTCCGCTTC TERM 2704 2452938 - 2452984 + g 100 -10.3 -5.27923 | opp_overlap 2452938 2452973 2452975, overlap 2452940 GAGAGAGCCGATATA TCTTTTTCTGCCGTATCTGCC ATCTC GGCAGGTAAGACAGAAAAATA TTTTTTGTCCGCTTC TERM 2705 2452940 - 2452982 + g 100 -12.9 -4.26475 | opp_overlap 2452938 2452973 2452975, overlap 2452938 GAGAGCCGATATATC TTTTTCTGCCGTATCTGCC ATCTC GGCAGGTAAGACAGAAAAA TATTTTTTGTCCGCT YPA_2188 2453930 - 2453247 - | putative two-component system response regulator TERM 2706 2453688 - 2453722 + g 83 -2.7 -5.41746 | CCGATCAATATTGTC GCCTTTAGCCGTTAA CATAA TGATCGGCAAACGGC TTTTTTTACGCACTT YPA_2189 2454118 - 2455323 + | HlyD family secretion protein YPA_2190 2455327 - 2457363 + | putative ABC transporter, ATP-binding protein TERM 2707 2457407 - 2457420 + T 86 -6.7 -4.9645 | GCTTTCATCGTGATA GGTCA TCCG TGACC TTTTATTGTTATCAT TERM 2708 2457585 - 2457598 + T 74 -4.5 -4.83615 | AACGCGAATTATTTT GGGTA TAGA TGCCC TTTTTATACAAAATA YPA_2191 2459264 - 2457618 - | putative pyridine nucleotide-disulphide oxidoreductase TERM 2709 2458364 - 2458336 - G 71 -11 -2.81584 | gap 1, opp_overlap 2458354, overlap 2458335 ATATCAGCCAATAAT CT-GCCTTGCCGG TTAG CCGGCCAGGCCAG TGGAATATACGTTGC YPA_2192 2460784 - 2459324 - | putative permease TERM 2710 2459888 - 2459871 - G 71 -5.5 -4.45117 | opp_overlap 2459872, overlap 2459872 GATATTTCAAATAAA GCCAGGT CAAC ATCTGGC CCGGTTAAGTCAGGG TERM 2711 2460598 - 2460566 - G 70 -9.1 -3.50393 | overlap 2460568 GGTGAGCGTATATAA TATGGCTGGGCCTTT TCC ATAAGCCCAGCCACT GCCCCCCAAGAATGT TERM 2712 2460596 - 2460568 - G 83 -13.9 -3.32698 | overlap 2460566 TGAGCGTATATAATA TGGCTGGGCCTTT TCC ATAAGCCCAGCCA CTGCCCCCCAAGAAT YPA_2193 2462152 - 2461121 - | putative peptidase YPA_2194 2462340 - 2462149 - | hypothetical protein YPA_2195 2463555 - 2462374 - | putative aminotransferase YPA_2196 2464255 - 2465673 + | hypothetical protein TERM 2713 2465758 - 2465784 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 2465747, overlap 2465753 2465759 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2714 2465759 - 2465785 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 2465747, overlap 2465753 2465758 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2715 2465863 - 2465888 + F 93 -11.9 -3.66378 | overlap 2465864 ATAAAAGTTCATTTA TGCTGAGTCAG TACG CTGGCTCAGCG TTTACATGGGATATG TERM 2716 2465864 - 2465887 + F 91 -13.2 -2.79505 | overlap 2465863 TAAAAGTTCATTTAT GCTGAGTCAG TACG CTGGCTCAGC GTTTACATGGGATAT YPA_2197 2465906 - 2467450 + | putative two-component sensor histidine kinase YPA_2198 2467447 - 2468154 + | putative two-component response regulator YPA_2199 2469767 - 2468535 - | hypothetical protein cysM 2470890 - 2470012 - | cysteine synthase B YPA_2201 2472152 - 2471061 - | sulfate/thiosulfate transporter subunit TERM 2717 2471471 - 2471461 - G 74 -2.4 -5.10163 | AATTCCAAAACAAAA CGGG TTG CCGG TTCACGCCAGACTTC cysW 2473017 - 2472142 - | sulfate/thiosulfate transporter permease subunit TERM 2718 2472786 - 2472774 - G 70 -4.8 -4.63527 | GCACCACCCCAAAAA CCAG GTTCA CTGG CACGGTTATCAATGC YPA_2203 2473850 - 2473017 - | sulfate/thiosulfate transporter subunit TERM 2719 2473116 - 2473074 - G 91 -12.6 -3.96618 | GTTAATGCTAAACAA CAGCGCCAGTGACACGGCCA GAA TCACCGAGGCAATGGCGCTG GCTGCCGGGTAATCA YPA_2204 2474887 - 2473850 - | thiosulfate transporter subunit TERM 2720 2475154 - 2475133 - R 100 -12.3 -6.32017 | gap 1 AACAAATAAAAAAAA GCCCGGT-CG TCG CGCACCGGGC AAGAAAAACAGTTTA YPA_2205 2476734 - 2475202 - | putative sialic acid transporter TERM 2721 2476531 - 2476515 - G 74 -8 -3.99405 | TGAAGGCAGCAGAAA TCAGGC TGGTC GCCTGA ATCAGTGTCAGGCCA TERM 2722 2476919 - 2476907 - R 76 -7.7 -4.23615 | opp_overlap 2476907 2476906 ATGACATTCAATAAA GGAGT AAA ACTCC ATTTGAGTGTATAAG YPA_2206 2478217 - 2477339 - | rpiR family transcriptional regulatory protein TERM 2723 2477795 - 2477779 - G 72 -3.7 -4.88228 | overlap 2477781 2477785 2477786 AGCCAACACCAAAAA TACAGAT GCG ATCCGCA GGGCGCAGCACTTTG TERM 2724 2478353 - 2478340 - R 100 -9.5 -5.54885 | AAGATCAATAAAAAA CCCGG AAAA CCGGG TAAAAAGGTCAAAAA YPA_2207 2478875 - 2478405 - | hypothetical protein YPA_2208 2479829 - 2478957 - | N-acetylmannosamine kinase TERM 2725 2480246 - 2480220 - g 72 -3.6 -4.89521 | opp_overlap 2480220, overlap 2480221 AGAGTGGAAAGAAAA TGCAGTTCCC GGAGAAG GGGAACAGCG TGGTATTGCCGTAGA YPA_2209 2480098 - 2480664 + | hypothetical protein YPA_2210 2480717 - 2481226 + | hypothetical protein YPA_2211 2481432 - 2482133 + | N-acetylmannosamine-6-phosphate 2-epimerase YPA_2212 2482196 - 2483089 + | N-acetylneuraminate lyase TERM 2726 2483149 - 2483127 - T 100 -13.5 -4.18044 | TGATAAATAATGAAA GGCCGGATT TCATC AATCCGGCC AACGGTGATATATTT YPA_2213 2484086 - 2483187 - | hypothetical protein TERM 2727 2483233 - 2483243 + g 70 -8.2 -3.72576 | GCAAAATAATAGCTG CCGG TAA CCGG TTTGCTAAAACGCAG TERM 2728 2484175 - 2484152 - R 74 -6.8 -4.39386 | CTGAAACGATTAAAA TTACCTTGCG ACAA CGCAAAATAA AGCGGGAAGAGAGAG TERM 2729 2484233 - 2484217 - R 76 -9.4 -3.4758 | TAGGAATAATATTAA GGCGCT GAGGT AGCGCC CAAGTGATAATAGCA YPA_2214 2484875 - 2484264 - | hypothetical protein YPA_2215 2485234 - 2485647 + | hypothetical protein TERM 2730 2487833 - 2487845 + G 75 -9.1 -3.96216 | ATAGTTATAGCTTGG GTGCC TAC GGCAC TTATTTCGATAACAG YPA_2216 2486203 - 2488413 + | putative autotransporter TERM 2731 2488431 - 2488458 + T 100 -14.2 -5.53991 | opp_overlap 2488430 AACATACCAGATGAG TGGTTTCCCGCG ATAA TGCGGGAGACCA TTTTTTTGCTCAATA YPA_2217 2488921 - 2488505 - | hypothetical protein YPA_2218 2489027 - 2489212 + | hypothetical protein YPA_2219 2489819 - 2489394 - | putative acetyltransferase TERM 2732 2490543 - 2490525 - g 70 -8.9 -3.61715 | TACGGCTTTGAAGAA GATGCCA TTCAT TGGCATC AGGTAGCGCATAGCC TERM 2733 2490636 - 2490662 + G 73 -2.8 -5.04385 | overlap 2490635 TATATTAAACATCGC CAGGAAGCCCGT GGT ATTGGCGGCCTG TTTTTTGACGATCTG TERM 2734 2490958 - 2490938 - g 77 -9.7 -3.65812 | GCGCTGGGAATATAA CTATCAGCC AGA GGCAGATAG TGCAGAAGCCGCGTT YPA_2220 2490102 - 2491031 + | coproporphyrinogen III oxidase TERM 2735 2491247 - 2491234 - g 91 -5.3 -5.40072 | GCGGGTGGAAAAAAA TGATC TGGT GATCA CCGCAGATATCCCAC YPA_2221 2491031 - 2491489 + | hypothetical protein YPA_2222 2493919 - 2491640 - | malic enzyme TERM 2736 2493061 - 2493093 + g 71 -7 -4.13728 | gap 1, opp_overlap 2493074, overlap 2493091 CCGGTTCCGGGTTTG CCAGGGC-CAGAATC AACG GATTCGGTGCCATGG TTTTCACCATCTCTG TERM 2737 2493821 - 2493838 + g 84 -11.3 -3.90112 | opp_overlap 2493820 2493819, overlap 2493826 CGCCAGTGCCAAATC CCGTTGG GTCG CCAACGG TTTGGTTGGCGAAAC YPA_2223 2494474 - 2494115 - | hypothetical protein YPA_2224 2495292 - 2494513 - | transposase/IS protein TERM 2738 2495211 - 2495225 + g 77 -11.4 -3.3506 | overlap 2495224 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_2225 2496314 - 2495292 - | transposase for insertion sequence IS100 TERM 2739 2496336 - 2496318 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_2226 2496697 - 2496341 - | hypothetical protein TERM 2740 2496780 - 2496752 - R 100 -12.4 -4.72272 | opp_overlap 2496752 CTGCTGCAGTAAAAA CGCCCTGCCGAC GCAAA GTCCACAGGGCG TTAATCATCACTCTC TERM 2741 2496752 - 2496780 + r 77 -10.2 -3.22774 | opp_overlap 2496752 CTGCTGCAGTAAAAA CGCCCTGCCGAC GCAAA GTCCACAGGGCG TTAATCATCACTCTC YPA_2227 2497453 - 2496854 - | cytochrome c-type protein NapC TERM 2742 2497505 - 2497493 - R 78 -9.1 -3.76224 | CGGTTACTGACCAAA GCCAG GTG CTGGC TGGAAGCTATTACCA napB 2497948 - 2497481 - | diheme cytochrome c550 TERM 2743 2497736 - 2497768 + g 80 -2 -5.38549 | overlap 2497707 2497737 GCTATGTGGGATCAT CGG-TGGCTGGTTAAC ATA GTTCAGC-GCCATCCG TTTTTGTTGTTTAGG YPA_2229 2500523 - 2498031 - | nitrate reductase YPA_2230 2500786 - 2500520 - | assembly protein for periplasmic nitrate reductase YPA_2231 2501279 - 2500776 - | ferredoxin-type protein NapF TERM 2744 2501075 - 2501064 - G 71 -5.8 -4.38154 | overlap 2501029 ACAGGCCTGACAAAA GCTG CACT CAGC ACGTTGAAAATCTAT TERM 2745 2501578 - 2501611 + H 73 -2.6 -5.11613 | opp_overlap 2501581, overlap 2501609 TTCATTTAACGGGAA TAATTACCAAAACA AGACGA TGCTTTGATAATTA TTTTTTAGATAATCT TERM 2746 2501946 - 2501911 - H 80 -9 -3.9578 | ACATACGCTAAATAA TTCGAGTGGCAGGAAG ACAG CCCCCTGCAACTTGAA GTATGACGGGTATAG YPA_2232 2502112 - 2502741 + | nitrate/nitrite response regulator protein NarP TERM 2747 2502756 - 2502736 - T 86 -2.6 -5.79595 | opp_overlap 2502736 2502739, overlap 2502739 TTGGAAAATAAAAAA TACTGACA TCCGT TGTCACTA TTTAATGGCCGCTAA YPA_2233 2503032 - 2502754 - | hypothetical protein TERM 2748 2504188 - 2504173 - g 70 -9 -3.5511 | overlap 2504171 TCCCAGCTACAAACA CCCGAA GAGT TTCGGG AAATTACGCTACGGG YPA_2234 2503447 - 2506578 + | aminoglycoside/multidrug efflux system TERM 2749 2506638 - 2506663 + F 76 -7.6 -4.20783 | AGTCGGTTCTCCCCT GCGGCATG ACGAAAAAAC CATGCCGC TTTATTGCATCAGAT YPA_2235 2506809 - 2507393 + | hypothetical protein TERM 2750 2507444 - 2507463 + F 74 -7.8 -4.01564 | overlap 2507445 2507447 CGCGCAATACTCACC CTAGGGCG TCCC CGCCCTAC TTTCTGGCTATTTTA TERM 2751 2507445 - 2507462 + F 83 -11.3 -2.99854 | overlap 2507444 2507447 GCGCAATACTCACCC TAGGGCG TCCC CGCCCTA CTTTCTGGCTATTTT TERM 2752 2507447 - 2507460 + F 71 -9.5 -3.0386 | overlap 2507445 2507444 GCAATACTCACCCTA GGGCG TCCC CGCCC TACTTTCTGGCTATT YPA_2236 2507682 - 2508230 + | hypothetical protein TERM 2753 2508396 - 2508418 + T 79 -6.9 -4.58283 | opp_overlap 2508396 GCGGGTAATAAAAAA GGCAGTGCC TCTAC GGTTCTGCC TTTTTGCGAGGATTC TERM 2754 2508418 - 2508396 - T 87 -4.7 -5.4505 | opp_overlap 2508396 GCGGGTAATAAAAAA GGCAGTGCC TCTAC GGTTCTGCC TTTTTGCGAGGATTC YPA_2237 2510159 - 2508984 - | putative sulfatase modifier protein TERM 2755 2509149 - 2509135 - G 71 -5 -4.57073 | overlap 2509137 TACCCTGCGCAAAAA TAGGAT TTC ATCCCA TCGCTGTCCTGATCA TERM 2756 2509769 - 2509796 + g 70 -9.2 -3.54543 | ATCCTTTGCCTGAGC GAGTCACACGGT AGCG ATCGTGTAACTC TTTAGGGCCATCAAT TERM 2757 2510183 - 2510207 + r 73 -8.5 -3.58305 | opp_overlap 2510183 2510185 2510199 2510200, overlap 2510202 TCATGGAGATAGACA GACGGCAAGAA AAA TACTTGCCGCC TTTGGCGGCTTAATT TERM 2758 2510207 - 2510183 - R 79 -10.7 -3.05993 | opp_overlap 2510183 2510202, overlap 2510185 2510199 2510200 TCATGGAGATAGACA GACGGCAAGAA AAA TACTTGCCGCC TTTGGCGGCTTAATT TERM 2759 2510205 - 2510185 - R 74 -9.7 -3.08465 | opp_overlap 2510183 2510202, overlap 2510183 2510199 2510200 ATGGAGATAGACAGA CGGCAAGAA AAA TACTTGCCG CCTTTGGCGGCTTAA TERM 2760 2510202 - 2510216 + r 100 -12.8 -3.39895 | opp_overlap 2510185 2510183 2510200 2510199, overlap 2510183 GCAAGAAAAATACTT GCCGCC TTT GGCGGC TTAATTCATACCAAG YPA_2238 2511890 - 2510217 - | putative sulfatase TERM 2761 2512144 - 2512133 - R 71 -2.2 -5.10497 | AAGCCACTGAAAAAA CACA ATGA TGCG ATATTAAACGGTGAG YPA_2239 2513438 - 2512368 - | ABC-transporter, ATP-binding protein YPA_2240 2515200 - 2513431 - | putative binding protein-dependent transport system, inner-membrane component TERM 2762 2515053 - 2515039 - G 74 -2.1 -5.1471 | ATCAGAAAAAATAAA CCTGA ACGCA TCAAG ACTCAGTACCTTTGA TERM 2763 2515283 - 2515252 - R 81 -9.4 -3.75517 | gap 1, overlap 2515253 AGCCGATAAAACCAA GGACTGCGCATGCCC ATA AGGCAAGCGCA-CCC AGATAAAGCCACTAT TERM 2764 2515283 - 2515253 - R 70 -9.6 -2.84587 | overlap 2515252 GCCGATAAAACCAAG GACTGCGCATGCCC ATA AGGCAAGCGCACCC AGATAAAGCCACTAT YPA_2241 2516383 - 2515295 - | hypothetical protein TERM 2765 2515478 - 2515495 + g 71 -7.7 -4.03234 | opp_overlap 2515467 AATATCTGACTGATT GGCCAGA ATAT TTTGGCC TTTCTCTGAGAGCAG TERM 2766 2515963 - 2515979 + g 73 -5.1 -4.74706 | opp_overlap 2515965 CAACGGGTTCGTAAG TAGAGCC GTA GGCTTTG TTTTTCCATATTGCC TERM 2767 2516672 - 2516656 - H 71 -9.5 -2.96184 | overlap 2516655 2516658 CAGCAAAATCTAAAG CAGCAAA CAG TTTGCTG ATAAGCCACGGTGTG YPA_2242 2516694 - 2517167 + | hypothetical protein YPA_2243 2517327 - 2517725 + | hypothetical protein TERM 2768 2518093 - 2518104 + G 71 -7.2 -3.9712 | opp_overlap 2518093 CACCCTGACCACAAA GGCC GCCT GGCC TTTATGATAACCTCC TERM 2769 2518104 - 2518093 - g 71 -7.2 -3.96624 | opp_overlap 2518093 CACCCTGACCACAAA GGCC GCCT GGCC TTTATGATAACCTCC YPA_2244 2517727 - 2518854 + | succinyl-diaminopimelate desuccinylase TERM 2770 2518930 - 2518954 + G 71 -7.9 -4.08767 | gap 1 TAAGTGGCGCTCATC GCCTACAGCC ACAGGC GGCTG-AGGC TTTTCAAGCAATGCA YPA_2245 2518851 - 2519528 + | putative carboxypeptidase YPA_2246 2519596 - 2519790 + | hypothetical protein YPA_2247 2522094 - 2519995 - | putative acetyltransferase TERM 2771 2520721 - 2520747 + g 73 -10.8 -3.29043 | overlap 2520722 2520724 CAGCGTTGGTGCCTG CCACTGCCCGCT ATG AGCGGCCAGTGA TTGTGCCACCAGATT TERM 2772 2520722 - 2520746 + g 81 -14.3 -2.57211 | overlap 2520721 2520724 AGCGTTGGTGCCTGC CACTGCCCGCT ATG AGCGGCCAGTG ATTGTGCCACCAGAT TERM 2773 2520724 - 2520744 + g 71 -11.1 -2.82623 | overlap 2520722 2520721 CGTTGGTGCCTGCCA CTGCCCGCT ATG AGCGGCCAG TGATTGTGCCACCAG TERM 2774 2521205 - 2521193 - G 76 -3.3 -5.16237 | overlap 2521194 AATTTCAGTAAAAAA CCACG CCC CGTGC CCTCATATCCCTGTA YPA_2248 2522548 - 2522096 - | hypothetical protein YPA_2249 2523508 - 2522642 - | hypothetical protein TERM 2775 2523126 - 2523113 - G 76 -5.9 -4.63218 | TGCCGGGCAATAAAA CGGCC CCAT GACCG ACTGACCGGTACCAC YPA_2250 2524440 - 2523727 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 2776 2524510 - 2524486 - R 100 -9.9 -4.49556 | opp_overlap 2524489, overlap 2524488 2524489 TCGTCATGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2777 2524508 - 2524488 - R 100 -12.5 -3.85603 | opp_overlap 2524489, overlap 2524486 2524489 GTCATGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2778 2524507 - 2524489 - R 100 -16 -2.90639 | opp_overlap 2524489, overlap 2524488 2524486 TCATGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2779 2524489 - 2524507 + r 100 -16 -4.8048 | opp_overlap 2524488 2524486 2524489 TCATGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2251 2525046 - 2524588 - | transposase for the IS1541 insertion element TERM 2780 2525159 - 2525177 + r 100 -16 -4.37092 | opp_overlap 2525159 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2781 2525177 - 2525159 - R 100 -16 -3.07307 | opp_overlap 2525159 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2782 2525218 - 2525195 - R 88 -11 -3.78934 | opp_overlap 2525195, overlap 2525200 TTCTGGGCACAATAA CTAAAGGGGC CGAA GCCCCTTTGG TTTTATTTTATCGCG TERM 2783 2525195 - 2525218 + r 100 -13.2 -5.18371 | opp_overlap 2525195 2525200 TTCTGGGCACAATAA CTAAAGGGGC CGAA GCCCCTTTGG TTTTATTTTATCGCG TERM 2784 2525213 - 2525200 - R 85 -9.5 -4.11664 | opp_overlap 2525195, overlap 2525195 GGCACAATAACTAAA GGGGC CGAA GCCCC TTTGGTTTTATTTTA YPA_2252 2526279 - 2525221 - | lipoprotein TERM 2785 2525610 - 2525643 + g 82 -10.9 -3.86822 | GCGTACCGACTTTAC GTGAGGCCTGACTGC TCTC GCTGTCAGCCCGCAC TTTATCCAAACCTTC YPA_2253 2527196 - 2526297 - | dihydrodipicolinate synthase TERM 2786 2527278 - 2527289 + H 93 -2.2 -6.15717 | ACTGTGTTGTAAGCG CTTG GCAG CAGG TTTTTTTTATGTTTA TERM 2787 2527475 - 2527489 + G 71 -6.4 -4.36554 | CGGCTGGCTATGTTC GGTGAG GAG TTCACC TTTATTATGCTGCTG gcvR 2527343 - 2527912 + | glycine cleavage system transcriptional repressor bcp 2527915 - 2528385 + | thioredoxin-dependent thiol peroxidase TERM 2788 2528442 - 2528427 - T 100 -10.4 -4.34711 | opp_overlap 2528429 AAAATTAACGGAAAA GAGCGC TCTG GCGCTC TTGAGGTTATTGACA YPA_2256 2529048 - 2528629 - | hypothetical protein YPA_2257 2529747 - 2529052 - | hypothetical protein YPA_2258 2530071 - 2529925 - | hypothetical protein YPA_2259 2531411 - 2530347 - | hypothetical protein TERM 2789 2530838 - 2530825 - G 74 -9.5 -3.53091 | ACCTGCCCGGCCAAA CCGCG GTTA CGCGG CAAAACACGGCGCAC TERM 2790 2531216 - 2531195 - G 70 -8.7 -3.63897 | overlap 2531193 CAAATAGCACAAATA CGATACTGG CCGC CCAGGATCG TGAACAACCAATACG YPA_2260 2531742 - 2533226 + | hypothetical protein YPA_2261 2533333 - 2533689 + | putative arsenate reductase YPA_2262 2534620 - 2533901 - | DNA replication initiation factor TERM 2791 2534718 - 2534694 - R 88 -9.9 -4.15788 | opp_overlap 2534697, overlap 2534696 2534697 AATTTGGTGAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2792 2534716 - 2534696 - R 100 -12.5 -3.6761 | opp_overlap 2534697, overlap 2534694 2534697 TTTGGTGAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2793 2534697 - 2534715 + r 100 -16 -4.8048 | opp_overlap 2534696 2534694 2534697 TTGGTGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2794 2534715 - 2534697 - R 100 -16 -2.80244 | opp_overlap 2534697, overlap 2534696 2534694 TTGGTGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2263 2535254 - 2534796 - | transposase for the IS1541 insertion element TERM 2795 2535367 - 2535385 + r 100 -16 -4.36914 | opp_overlap 2535367 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2796 2535385 - 2535367 - R 100 -16 -3.07307 | opp_overlap 2535367 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2797 2535421 - 2535404 - R 100 -8.4 -5.24129 | opp_overlap 2535404 TCTGGGCACAAAAAA GCCGAC TTTCAC GTCGGC TATCATCGTTATTTA upp 2536056 - 2535430 - | uracil phosphoribosyltransferase YPA_2265 2536453 - 2537496 + | phosphoribosylaminoimidazole synthetase TERM 2798 2537798 - 2537810 + G 76 -7.7 -4.36262 | ATGCCAAGGCTTTTA CTGAC CGC GTCAG TTTTGATCTGGCTCT purN 2537611 - 2538249 + | phosphoribosylglycinamide formyltransferase YPA_2267 2538478 - 2539023 + | spermidine acetyltransferase TERM 2799 2539028 - 2539047 + T 88 -10 -4.20768 | AAAATGCTTAATACG TTGGGGTC AGAT GGCCCCAA TTGTTTCTTCCCCGT YPA_2268 2539950 - 2539117 - | hypothetical protein TERM 2800 2539451 - 2539441 - G 74 -2.4 -5.06414 | opp_overlap 2539447 2539449 GTGCTGTAAGAAAAA GGGC CAT GCCT GTTGAGACCAGGTAT TERM 2801 2539584 - 2539574 - G 74 -6.8 -4.37658 | AATTGTGTCATAAAA TGCC CCA GGCA AGCCAATAACACCTT YPA_2269 2540306 - 2539926 - | hypothetical protein YPA_2270 2541346 - 2540534 - | putative phosphate transport ATP-binding protein YPA_2271 2543086 - 2541374 - | putative phosphate transport system permease TERM 2802 2542423 - 2542438 + g 70 -3.2 -4.77173 | TGCTGTCTAAATCTC CGGC AATTTGCA GCCG TTTCTTTTGTAACCG YPA_2272 2545317 - 2543086 - | putative phosphate transport system permease TERM 2803 2544377 - 2544387 + g 74 -8.2 -4.09685 | opp_overlap 2544376 GTCAAATGGAACGAT GGGC TTG GCCC TTTTCGCACATCAAA YPA_2273 2545588 - 2547651 + | polyphosphate kinase TERM 2804 2548729 - 2548717 - g 71 -6.3 -4.37092 | overlap 2548723 ATGGTTGGCACAAAA TACCA AGC TGGTA CAGCCCCAACTGGAA YPA_2274 2547662 - 2549221 + | exopolyphosphatase TERM 2805 2549274 - 2549238 - f 86 -8 -4.65916 | gap 1, opp_overlap 2549241, overlap 2549240 CTGACGCTAATAAAA TCG-TGCACCGGGTGGT TGTC ATCACCCGGTGCGTCAA TTGACAGCATGAGCG TERM 2806 2549241 - 2549270 + F 100 -16.5 -2.52676 | opp_overlap 2549240 2549238 ACGCTAATAAAATCG TGCACCGGGTGGT TGTC ATCACCCGGTGCG TCAATTGACAGCATG YPA_2275 2549597 - 2551072 + | putative divalent cation transport protein YPA_2276 2551212 - 2552564 + | putative chaperone TERM 2807 2552581 - 2552608 + F 100 -9.9 -5.09204 | overlap 2552577 CCCTATTATGTTCAC CTCTCAGTGAG TTATCT CGCACTGAGAG TTTTTGTTGGCGTAT YPA_2277 2552702 - 2552827 + | hypothetical protein TERM 2808 2552819 - 2552837 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2278 2552841 - 2553863 + | transposase for insertion sequence IS100 TERM 2809 2553944 - 2553930 - g 77 -11.4 -3.3506 | overlap 2553921 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2279 2553863 - 2554642 + | transposase/IS protein YPA_2280 2555643 - 2554795 - | putative ABC transporter permease YPA_2281 2556970 - 2555705 - | putative ABC transporter permease TERM 2810 2556547 - 2556568 + g 82 -11.6 -3.70149 | TGATTAGCGCTTCAC GTACCGGC CCTTCA GCCGGTAC TTTCCGTAGTGTCGA YPA_2282 2558045 - 2557017 - | putative transport system periplasmic protein TERM 2811 2557118 - 2557096 - G 74 -7.6 -4.13767 | TTGTTCATGGGAAAA GCCTCAGCCA GGT TGGCTGGCGC AGTGGGTAAATTAGC YPA_2283 2559411 - 2558098 - | 4-aminobutyrate aminotransferase TERM 2812 2558326 - 2558355 + g 70 -4.3 -4.62783 | gap 1 TCCACGCGCACGAAT GCCCACAATGGCCG CAT TGCTCATT-TGGGC TTTTTCCAGTACGTC TERM 2813 2560262 - 2560250 - g 73 -9.1 -3.67597 | GCCTGGATTGAAGAA CCCAG CTA CTGGG GGATCCGCAACGTGT TERM 2814 2560597 - 2560584 - g 76 -8.1 -4.26076 | GTACCTTCAGTAAAA CCCTG TATC CAGGG ATGCGTATCAGCTAC TERM 2815 2560970 - 2560953 - g 73 -5.5 -4.68593 | gap 1, opp_overlap 2560954 2560955, overlap 2560954 2560955 GCTATTACTTAAAAA GTCCCCCG CGA CGAGGG-C TGTTACTCGGTTATG YPA_2284 2559569 - 2561074 + | GntR family regulatory protein YPA_2285 2561457 - 2562542 + | putitive ABC-transporter ATP-binding protein TERM 2816 2562902 - 2562891 - f 75 -2.2 -5.31877 | gap 1, overlap 2562892 AGCCACGATAAAAAA GGACG CTT CG-CC ATCATGAAATCTCAA YPA_2286 2562906 - 2564240 + | multidrug efflux system subunit MdtA TERM 2817 2564259 - 2564284 + G 71 -6.1 -4.30719 | gap 1, opp_overlap 2564246 2564261, overlap 2564263 2564272 AAGTGATGCCTCCAA CACCCGGTGGCG GGC CGTCAC-GGCTG TTTATTCTGCGCCCG TERM 2818 2564272 - 2564282 + G 70 -8.2 -3.75817 | overlap 2564263 2564259 AACACCCGGTGGCGG GCCG TCA CGGC TGTTTATTCTGCGCC TERM 2819 2565093 - 2565077 - g 76 -5.8 -4.67697 | overlap 2565078 GCGGAAAATAACAAA CTGGCC GCCTG GGCCAA TACTCAATCAGCAAT TERM 2820 2565861 - 2565896 + G 77 -9 -3.97042 | CGTGGCTGACCCTAA GTGTCGCGTTCAGCAC ACTG GTGCTGACGGTGATAC TTTACTTGCTGATCC YPA_2287 2564240 - 2567398 + | multidrug efflux system subunit MdtB YPA_2288 2567395 - 2570469 + | multidrug efflux system subunit MdtC TERM 2821 2570926 - 2570967 + G 100 -10.8 -4.75404 | gap 1 GCGTTTGTCACACTG CCCGGCCAG-ATTGGGCCA TTAGT TGGCCCGGCGCTGGGCGGG TTTTTAGTGGAATTT TERM 2822 2571560 - 2571579 + G 72 -8.6 -3.9461 | CAATCATGGGTTGGA CACTGCTG ATGC CAGTAGTG TTATTCTTCCAAGGC YPA_2289 2570503 - 2571900 + | multidrug efflux system protein MdtE TERM 2823 2572935 - 2572923 - g 78 -4.1 -5.18726 | CTTCCAGAACAAAAA GATGA CCA TCACC GCCCACCTGCCTGAA YPA_2290 2571931 - 2573046 + | hypothetical protein YPA_2291 2573058 - 2573315 + | ATP-binding region, ATPase-like YPA_2292 2573325 - 2574044 + | DNA-binding transcriptional regulator BaeR YPA_2293 2574181 - 2574519 + | hypothetical protein TERM 2824 2574579 - 2574601 + F 79 -7.7 -4.32046 | ACGACCACTTATCCC TGCGCGG GGCCATTAA CCGCGCA TTTCATTTTTGCACG YPA_2294 2574794 - 2576188 + | putative protease TERM 2825 2576208 - 2576226 + F 85 -6 -5.17353 | opp_overlap 2576208 ATTCAATAAAATGAA TGCCAC AGATAAA GTGGCA TTTTTTAGTAAATAT TERM 2826 2576342 - 2576369 + F 100 -13.5 -5.43553 | AGGAACCACCTCCTT GGCTAGCCCAA TCTCCC TTGGGCTGGCC TTTTCTTTTTTCCCT TERM 2827 2577589 - 2577555 - g 74 -6.5 -4.36508 | gap 1, overlap 2577552 TGAGAAAAATAAGAA TGTTATCGACGCCACG GTAC CTTGGC-TCGATATCA CTGCACCGAACGATA YPA_2295 2576824 - 2577714 + | lipid kinase TERM 2828 2577938 - 2577898 - T 76 -6.7 -4.56113 | opp_overlap 2577908 2577909, overlap 2577900 AACAGAGTAAATAAA CAGCGGAGCACGGCGAGAA CCG CCCTTGTCTTGCTCCGCCA TTGGCGATTCGGGGC TERM 2829 2577936 - 2577900 - T 81 -9.3 -3.8721 | opp_overlap 2577908 2577909, overlap 2577898 CAGAGTAAATAAACA GCGGAGCACGGCGAGAA CCG CCCTTGTCTTGCTCCGC CATTGGCGATTCGGG TERM 2830 2577991 - 2577968 - T 73 -8.2 -3.61715 | CATTGTTGGCAATAA GTCATCACTC ATAA GAGTCATGAC GTGCAAAACTCAGCG YPA_2296 2578510 - 2578001 - | hypothetical protein YPA_2297 2578741 - 2578911 + | hypothetical protein TERM 2831 2578954 - 2578943 - gT 82 -7.2 -4.74518 | opp_overlap 2578945 AATTATCAAAACAAA CGCG GTAC CGCG AACGGTTTTGTCATT YPA_2298 2578883 - 2579629 + | hypothetical protein TERM 2832 2579760 - 2579713 - T 79 -10.7 -3.08508 | gap 1, opp_overlap 2579720, overlap 2579710 2579717 CATTGGTGAAAATGA TGAACAGGCCCGATGCCCTG CCCCACCTC CAGGGTATCGG-CCTGTTCC AGCGCACGTTGCAAA YPA_2299 2580491 - 2579691 - | phosphomethylpyrimidine kinase TERM 2833 2579756 - 2579717 - G 72 -10.1 -3.37533 | gap 1, opp_overlap 2579720, overlap 2579713 2579710 GGTGAAAATGATGAA CAGGCCCGATGCCCTG CCCCACCTC CAGGGTATCGG-CCTG TTCCAGCGCACGTTG TERM 2834 2580347 - 2580357 + g 74 -6.8 -4.36914 | GATAAACCGACTGCA CACC ACG GGTG TTTTGTGCCACCAGC TERM 2835 2580554 - 2580536 - H 75 -8.9 -3.57561 | GGCTAATGGCGTAAA TTCAGCC GCAGT GGCTGAA AAGAGAACGGCAGGT YPA_2300 2581013 - 2581480 + | hypothetical protein YPA_2301 2581539 - 2581817 + | hypothetical protein TERM 2836 2581855 - 2581834 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_2302 2583037 - 2581829 - | transposase for the IS285 insertion element TERM 2837 2583512 - 2583522 + G 76 -6.8 -4.49377 | GCTAAAATAGCCATT GTCG CGG CGAC TTCTTTTATTGTAGG YPA_2303 2583062 - 2583763 + | hypothetical protein YPA_2304 2583760 - 2584155 + | hypothetical protein YPA_2305 2584219 - 2584614 + | hypothetical protein TERM 2838 2584628 - 2584618 - f 70 -2.6 -4.96848 | CTTTGTAGATAAAAA TAAA ATA TTTA ACAAGAAAATAATTT YPA_2306 2584676 - 2585071 + | hypothetical protein YPA_2307 2585135 - 2585533 + | hypothetical protein YPA_2308 2585557 - 2586036 + | hypothetical protein TERM 2839 2586122 - 2586090 - T 100 -11.3 -5.1286 | opp_overlap 2586097, overlap 2586096 2586097 TAAAAACCATAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2840 2586116 - 2586096 - T 100 -12.5 -4.09508 | opp_overlap 2586097, overlap 2586090 2586097 CCATAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2841 2586097 - 2586115 + T 100 -16 -4.8048 | opp_overlap 2586096 2586090 2586097 CATAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2842 2586115 - 2586097 - T 100 -16 -3.04078 | opp_overlap 2586097, overlap 2586096 2586090 CATAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2309 2586369 - 2586196 - | transposase for the IS1541 insertion element YPA_2310 2586635 - 2586366 - | putative transposase TERM 2843 2586748 - 2586766 + r 100 -16 -4.36914 | opp_overlap 2586748, overlap 2586762 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 2844 2586766 - 2586748 - R 100 -16 -3.07307 | opp_overlap 2586748 2586762 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 2845 2586807 - 2586788 - R 100 -7.8 -5.55769 | opp_overlap 2586762 2586788 GGGCACAACAAAAAA CCGCCTAA TATT TAAGGCGG TTTCAGACTGCTGGC TERM 2846 2586788 - 2586807 + r 70 -7.8 -3.58343 | opp_overlap 2586788, overlap 2586762 GGGCACAACAAAAAA CCGCCTAA TATT TAAGGCGG TTTCAGACTGCTGGC TERM 2847 2586943 - 2586962 + r 84 -6.4 -4.98616 | opp_overlap 2586943 GTCAATAACCTCAAA CCGCCT AATATTCA AGGCGG TTTTTGCTATTTTCA guaA 2588587 - 2587010 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 2848 2588754 - 2588724 - R 100 -9.9 -5.79595 | opp_overlap 2588724 2588727 2588728 TTTTAAAATAAAAAA TAACCATCTGATG GCCAG CACCAGATGATTA TTTAACTAATTGTTA YPA_2312 2590230 - 2588767 - | inositol-5-monophosphate dehydrogenase TERM 2849 2589691 - 2589707 + g 70 -2.2 -5.00616 | overlap 2589693 GACCAACACTTTCTC TACACG TTTTT CGTGCA TTTTTTGCAGCACAA xseA 2590400 - 2591779 + | exodeoxyribonuclease VII large subunit YPA_2314 2593165 - 2592209 - | hypothetical protein TERM 2850 2593316 - 2593305 - R 85 -2.2 -5.77988 | ATATAGAGAAAAAAA CCAG GCTA CTGA CAAACCCCGATGACG TERM 2851 2593393 - 2593367 - R 86 -10.1 -3.9749 | gap 1, overlap 2593368 AGGCAGAAGAGTAAA GTGTCCGCGCCA GAGA TGGCGCGG-CTC AAGCTCCCAAGGAAG engA 2594999 - 2593512 - | GTP-binding protein EngA TERM 2852 2595080 - 2595102 + r 100 -10.5 -4.63527 | opp_overlap 2595059 2595080 TTTTTAGAATACAAA CGGCCCCTG AGTCC CAGGAGCCG TTTTTGAGGTACTGG TERM 2853 2595102 - 2595080 - R 100 -13.4 -4.27117 | opp_overlap 2595080, overlap 2595059 TTTTTAGAATACAAA CGGCCCCTGA GTC CCAGGAGCCG TTTTTGAGGTACTGG YPA_2316 2596328 - 2595147 - | outer membrane protein assembly complex subunit YfgL YPA_2317 2596975 - 2596340 - | hypothetical protein hisS 2598263 - 2596989 - | histidyl-tRNA synthetase ispG 2599599 - 2598472 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 2854 2598515 - 2598531 + g 74 -9.5 -3.55203 | ACAATCCGGTTATTC GCATCAA GAA TTGATGC TTTGGCACGAATTTT TERM 2855 2599476 - 2599487 + g 73 -5.8 -4.44797 | opp_overlap 2599469, overlap 2599484 GGGCAACAGTGGCAT CCAC ATCC GTGG TTTTGGTATTGGTCA YPA_2320 2600698 - 2599661 - | hypothetical protein YPA_2321 2601437 - 2600688 - | putative fimbrial biogenesis protein YPA_2322 2602787 - 2601591 - | hypothetical protein TERM 2856 2602883 - 2602922 + r 74 -9.2 -3.36518 | opp_overlap 2602883 2602888, overlap 2602885 AGAATGTATAAATAA TAGAACGCCCCAGCAGAG CTGT CTCTACTGGGGCGTGGCA TTGTACAAATTTTAA TERM 2857 2602922 - 2602883 - R 100 -13.6 -4.11906 | opp_overlap 2602883 2602885, overlap 2602888 AGAATGTATAAATAA TAGAACGCCCCAGCAGAG CTGT CTCTACTGGGGCGTGGCA TTGTACAAATTTTAA TERM 2858 2602885 - 2602921 + r 80 -11.6 -2.61429 | gap 1, opp_overlap 2602883 2602888, overlap 2602883 AATGTATAAATAATA G-AACGCCCCAGCAGAG CTGT CTCTACTGGGGCGTGGC ATTGTACAAATTTTA TERM 2859 2602917 - 2602888 - R 100 -20.1 -3.93744 | opp_overlap 2602885 2602883, overlap 2602883 GTATAAATAATAGAA CGCCCCAGCAGAG CTGT CTCTACTGGGGCG TGGCATTGTACAAAT ndk 2603477 - 2603049 - | nucleoside diphosphate kinase TERM 2860 2603179 - 2603161 - G 70 -3 -4.86033 | opp_overlap 2603164 2603172, overlap 2603162 AAACTGTCAGAAAAA TCAGCACG TAG CGTACCGG CTAGTGCGTTATCTG YPA_2324 2606224 - 2603804 - | hypothetical protein TERM 2861 2604399 - 2604387 - G 71 -6.3 -4.37092 | ACCGTCTCGATAAAA TGGTA ATC TACCA GTGCCAGTTCATAAC TERM 2862 2605346 - 2605325 - G 76 -3.1 -5.17507 | AAAACGCAATAAAAA TGACAAA TTACTACT TTTGTCA CTTAAATTAAACAAA TERM 2863 2605730 - 2605740 + g 76 -3.2 -5.12068 | GACTGTAGTTTGCAT TCCT GGA GGGA TTTTTATTGAATATA YPA_2325 2606399 - 2606656 + | hypothetical protein TERM 2864 2608082 - 2608059 - g 83 -5.2 -5.13521 | overlap 2608062 AAAGCAGCTAAAAAA GAACTTGACG CTAT CGCCAAGGCC CAAAAAGCAGTTGAG TERM 2865 2608079 - 2608062 - g 82 -7.7 -4.64763 | overlap 2608059 GCAGCTAAAAAAGAA CTTGACG CTAT CGCCAAG GCCCAAAAAGCAGTT TERM 2866 2608395 - 2608378 - g 76 -6.3 -4.67942 | gap 1 CGGAACAAACTAAAA CAGCC-CT TGA AGCGGCTG AAAAAGCTAAAGAAG YPA_2326 2606940 - 2611316 + | putative autotransporter protein TERM 2867 2611406 - 2611431 + F 100 -11.1 -4.7078 | opp_overlap 2611405 2611404 2611406 TGACTGATAAAAACC GCAGGGGGCTG CAAT TGGCTCCCTGC TTTTTACCTGATTAA YPA_2327 2611874 - 2615032 + | hypothetical protein YPA_2328 2614998 - 2615318 + | hypothetical protein TERM 2868 2615452 - 2615433 - T 81 -10.7 -3.32997 | GTGGCAGAAATGGAA GGGAGCC TCTATT GGCTCCC TGAGGTTATTGACAA TERM 2869 2615530 - 2615556 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 2615519, overlap 2615525 2615531 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2870 2615531 - 2615557 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 2615519, overlap 2615525 2615530 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2871 2615618 - 2615637 + T 79 -10.7 -3.11281 | overlap 2615617 2615614 GTTTGTCAGCAGTCT GGGAGCC TCTATT GGCTCCC TATCCTTTTAGATAC YPA_2329 2616609 - 2615656 - | enhanced serine sensitivity protein SseB TERM 2872 2616048 - 2616070 + g 86 -13.4 -3.61715 | TGTCTACCACCATTT CAGCGGGTTG CAC CAACCCGCCG TTCTTCAACAGCATC TERM 2873 2616336 - 2616314 - G 70 -8.5 -3.7398 | gap 1, overlap 2616312 TCCCAATGCAAAATA TTCACC-CCG TTAG CGGTGGTGAA ACTCATTTCGCCATC TERM 2874 2616666 - 2616640 - R 78 -10.1 -3.42459 | opp_overlap 2616644 2616664, overlap 2616634 2616644 CATCGAGAAGATGAA CGAAGGGACGC CAAAT GCGCCCCTTTG AGTCTTCTCAATTCA TERM 2875 2616644 - 2616662 + r 70 -7.3 -3.79071 | opp_overlap 2616644 2616640 2616634 GAGAAGATGAACGAA GGGACGC CAAAT GCGCCCC TTTGAGTCTTCTCAA TERM 2876 2616662 - 2616644 - R 76 -9.5 -3.4684 | opp_overlap 2616644, overlap 2616640 2616634 GAGAAGATGAACGAA GGGACGC CAAAT GCGCCCC TTTGAGTCTTCTCAA YPA_2330 2617986 - 2616688 - | aminopeptidase B TERM 2877 2617078 - 2617099 + g 71 -6.5 -4.25104 | opp_overlap 2617093 GCCGGTTAAGGTGGC TGCGTCGAT AATC AACGGCGCA TTTTGCTCGGAGGCA TERM 2878 2618115 - 2618100 - R 100 -8.2 -5.49234 | ATACGCAATAAAAAA GGCCGC TTGC GCGACC CAGTCAGTATTCACT YPA_2331 2618326 - 2618126 - | hypothetical protein YPA_2332 2618691 - 2618356 - | ferredoxin hscA 2620646 - 2618694 - | chaperone protein HscA TERM 2879 2618756 - 2618725 - G 91 -15.2 -3.56568 | GAATGACCCGCTAAA GCACGGCGAATGGA AGCG TCCATCCGGCGTGC GGCAAAATCTTGCGT TERM 2880 2618865 - 2618844 - G 86 -13.7 -3.61398 | opp_overlap 2618841 CTGCTGCTGTAATAA CGCGACCGC TTGG GCGATCGCG GCACTTTCTTGCTCA hscB 2621413 - 2620889 - | co-chaperone HscB iscA 2621847 - 2621524 - | iron-sulfur cluster assembly protein YPA_2336 2622503 - 2622117 - | scaffold protein YPA_2337 2623763 - 2622534 - | putative aminotransferase YPA_2338 2624311 - 2623817 - | DNA-binding transcriptional regulator IscR YPA_2339 2625240 - 2624467 - | SpoU family rRNA methylase TERM 2881 2625124 - 2625161 + g 87 -9.5 -4.29738 | gap 1, opp_overlap 2625114 2625127 2625144 AGAATCTGGTTTTAC CAAT-GGATTAACCAA ATATAGA TTGGTTAATCCCATTG TTTTCATGGCTCTGG YPA_2340 2625359 - 2626162 + | inositol monophosphatase TERM 2882 2626216 - 2626193 - T 100 -10.3 -4.96848 | opp_overlap 2626193 CGTTTCAGATAAAAA GCCAGTCAG GGTTAG CCGACTGGC TTTTTTTATTGGGAA TERM 2883 2626193 - 2626216 + T 100 -8.9 -5.7946 | gap 1, opp_overlap 2626193 CGTTTCAGATAAAAA GCCAGTCAGG GTTAG CC-GACTGGC TTTTTTTATTGGGAA YPA_2341 2627283 - 2626261 - | hypothetical protein YPA_2342 2627948 - 2627274 - | hypothetical protein TERM 2884 2627666 - 2627652 - G 72 -10 -3.36073 | overlap 2627650 TATATCGGTGAAATA GTGCTG CCC CAGCAC ATTAGCCATCACTTC TERM 2885 2629347 - 2629374 + G 79 -12.8 -3.03781 | opp_overlap 2629348, overlap 2629344 TATGTTTTGCAATCA ACTGAATCAGCG CCGC CGCTGATTCAGA TATCATTTCCGTTAA TERM 2886 2629373 - 2629348 - g 100 -16.3 -3.33815 | opp_overlap 2629347 2629344 ATGTTTTGCAATCAA CTGAATCAGCG CCGC CGCTGATTCAG ATATCATTTCCGTTA YPA_2343 2628090 - 2629436 + | stationary phase inducible protein CsiE YPA_2344 2630590 - 2629433 - | putative 3-phenylpropionic acid transporter TERM 2887 2630905 - 2630921 + r 72 -6.5 -4.3534 | opp_overlap 2630906, overlap 2630906 TGTCAGCAATTTGAA ACCACCA TTA TGGTGGG TTTTCATGGTTAGGA TERM 2888 2630906 - 2630920 + r 74 -10 -3.20722 | opp_overlap 2630906, overlap 2630905 GTCAGCAATTTGAAA CCACCA TTA TGGTGG GTTTTCATGGTTAGG TERM 2889 2630920 - 2630906 - R 80 -10 -3.67976 | opp_overlap 2630905 2630906 GTCAGCAATTTGAAA CCACCA TTA TGGTGG GTTTTCATGGTTAGG YPA_2345 2631490 - 2630942 - | attachment invasion locus protein YPA_2346 2631821 - 2631600 - | hypothetical protein TERM 2890 2631920 - 2631899 - R 95 -11.5 -3.86202 | CCCGATGAGATCAAA GCCCCGGCC AGGA GGCCAGGAC GGTGACAGCCGCCTT glyA 2633187 - 2631934 - | serine hydroxymethyltransferase TERM 2891 2633573 - 2633585 + H 80 -6.3 -4.87626 | overlap 2633582 AGAATTATCCTCATA TTCAC TAT GTGAA TTTTTCATCTTCAGC YPA_2348 2633728 - 2634918 + | nitric oxide dioxygenase TERM 2892 2634955 - 2634982 + F 80 -9.9 -3.695 | overlap 2634956 CTACGCACTTAATGC CGCTGATCAGG AAGGTA CCTGATCAGCA TTTCGGCTATTTCAA TERM 2893 2634956 - 2634981 + F 93 -13.4 -2.81218 | overlap 2634955 TACGCACTTAATGCC GCTGATCAGG AAGGTA CCTGATCAGC ATTTCGGCTATTTCA YPA_2349 2635382 - 2635945 + | hypothetical protein YPA_2350 2635878 - 2636282 + | hypothetical protein TERM 2894 2636412 - 2636387 - T 91 -6.2 -5.50499 | gap 1, opp_overlap 2636387 TTATATGTAAAAAAA CCCGCATCGTT TTGGC AACGA-ACGGG CTTTTGTTATTCAGC YPA_2351 2636789 - 2636451 - | nitrogen regulatory protein P-II 1 nadE 2638426 - 2636804 - | NAD synthetase YPA_2353 2639923 - 2638586 - | two-component system response regulator TERM 2895 2638939 - 2638928 - GR 74 -7.2 -4.19371 | GAAACTGCGAACAAA CGGC TTAT GCCG CTTAGCCGACTCCCG YPA_2354 2640953 - 2639886 - | hypothetical protein TERM 2896 2640867 - 2640851 - GR 89 -7.3 -5.00884 | ACGCTCCCCAAAAAA TCCCTCT GCC AGAGAGA CCGGTCTGTTTCACG YPA_2355 2642393 - 2640957 - | two-component system sensor kinase TERM 2897 2642540 - 2642508 - R 100 -11.3 -5.00196 | opp_overlap 2642515, overlap 2642514 2642515 GTTGAAATAACAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2898 2642534 - 2642514 - R 100 -12.5 -4.06214 | opp_overlap 2642515, overlap 2642508 2642515 ATAACAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2899 2642533 - 2642515 - R 100 -16 -3.01288 | opp_overlap 2642515, overlap 2642514 2642508 TAACAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2900 2642515 - 2642533 + r 100 -16 -4.8048 | opp_overlap 2642515 2642514 2642508 TAACAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2356 2643072 - 2642614 - | transposase for the IS1541 insertion element YPA_2357 2643286 - 2643062 - | hypothetical protein TERM 2901 2643203 - 2643185 - G 93 -16 -3.07307 | opp_overlap 2643185 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2902 2643185 - 2643203 + g 100 -16 -4.36914 | opp_overlap 2643185 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2903 2643244 - 2643223 - G 100 -8.1 -5.60993 | gap 1, opp_overlap 2643223 CTGGGCACAAAAAAA GCAC-TTGCT GCG AGCAAAGTGC TTTTTTTAAAGGTTG TERM 2904 2643223 - 2643244 + g 100 -8.1 -5.43866 | gap 1, opp_overlap 2643223 CTGGGCACAAAAAAA GCAC-TTGCT GCG AGCAAAGTGC TTTTTTTAAAGGTTG TERM 2905 2643431 - 2643398 - H 80 -9.8 -3.617 | gap 2, opp_overlap 2643398, overlap 2643396 2643406 2643418 ATAGACAACTAAACA TTGATCAACGGGGCAA TAAA TTGCCCCGTTG--CAA GAATATGTGGATGCC TERM 2906 2643425 - 2643406 - H 100 -13.6 -3.23638 | opp_overlap 2643398, overlap 2643398 2643396 2643418 CTAAACATTGATCAA CGGGGCAA TAAA TTGCCCCG TTGCAAGAATATGTG YPA_2358 2644299 - 2644859 + | hypothetical protein TERM 2907 2645142 - 2645128 - f 73 -8.6 -3.68222 | TTTTAAGGTCAACAA CAAGTC AGT GACTTG GATGACAACGGTTAT YPA_2359 2645182 - 2645760 + | hypothetical protein TERM 2908 2645836 - 2645808 - T 70 -2.6 -4.98352 | gap 1, overlap 2645815 ATTAAATAAAATAAA CTATATACCCAAA ATAA TTTGAGT-TACAG AAAGGCAACAAGGGA TERM 2909 2645972 - 2645950 - T 90 -11.4 -3.60597 | overlap 2645948 2645953 ATAAATTGATAAAGA GAAGGGTATC TTC AATACCCTTC AGACTGCTGACAAAC TERM 2910 2645969 - 2645953 - T 72 -7.3 -3.91369 | overlap 2645950 2645948 AATTGATAAAGAGAA GGGTATC TTC AATACCC TTCAGACTGCTGACA TERM 2911 2646059 - 2646033 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2646042, overlap 2646034 2646049 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2912 2646060 - 2646034 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2646042, overlap 2646033 2646049 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPA_2360 2650035 - 2646172 - | phosphoribosylformylglycinamidine synthase TERM 2913 2647115 - 2647128 + g 72 -8.1 -3.95073 | opp_overlap 2647115 2647114, overlap 2647114 TCTGCCCACCACAAG CGCAG AGTG CTGCG TTTCTCGCTGTACAC TERM 2914 2648076 - 2648117 + g 73 -2.9 -5.0538 | gap 1, opp_overlap 2648081 TCTGATCACGGGTGA CCATACCGGTTACCGTGCGG TCG CCG-ATGGTGATCAGGAAGG TTTTTTCCGCTACCG TERM 2915 2648773 - 2648784 + g 76 -5.8 -4.60487 | overlap 2648766 CAATTTGGCCCCCAC GGTG ATTT CACC TTTTTGCACATGATC TERM 2916 2651774 - 2651758 - g 100 -6.5 -5.69068 | overlap 2651769 GAAAAAGAGAAAAAA GCGGC TCAACAT GCCGC CATTGAGGCGGAGCT YPA_2361 2650297 - 2651838 + | putative transglycosylase TERM 2917 2651931 - 2651901 - T 79 -11 -3.18912 | overlap 2651902 TGATTTAGTCACCAA CCGCCGCCCGTCAT AAC ATGCTGGGCGGCGC ATCACCTGGCCACCG TERM 2918 2651930 - 2651902 - T 100 -14.5 -2.51133 | overlap 2651901 GATTTAGTCACCAAC CGCCGCCCGTCAT AAC ATGCTGGGCGGCG CATCACCTGGCCACC YPA_2362 2652510 - 2651947 - | tRNA-specific adenosine deaminase YPA_2363 2653267 - 2652620 - | hypothetical protein murQ 2654429 - 2653542 - | N-acetylmuramic acid-6-phosphate etherase YPA_2365 2654637 - 2655476 + | putative DNA-binding transcriptional regulator YPA_2366 2655638 - 2655898 + | putative (4Fe-4S) ferredoxin TERM 2919 2655976 - 2655952 - T 88 -9.9 -4.21974 | opp_overlap 2655955, overlap 2655954 2655955 CCAGTATGCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2920 2655974 - 2655954 - T 100 -12.5 -3.70709 | opp_overlap 2655955, overlap 2655952 2655955 AGTATGCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2921 2655955 - 2655973 + T 100 -16 -4.8048 | opp_overlap 2655955 2655954 2655952 GTATGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2922 2655973 - 2655955 - T 100 -16 -2.81702 | opp_overlap 2655955, overlap 2655954 2655952 GTATGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2367 2656512 - 2656054 - | transposase for the IS1541 insertion element TERM 2923 2656643 - 2656625 - R 100 -16 -3.07307 | opp_overlap 2656625 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2924 2656625 - 2656643 + r 100 -16 -4.36914 | opp_overlap 2656625 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2925 2656685 - 2656661 - R 78 -5.8 -4.82901 | gap 1, opp_overlap 2656661 TTCTGGGCACAAAAA GGGATG-GCAT TTCC ATACCCATCCC TTAAATTTTCGGCTA acpS 2657094 - 2656714 - | 4'-phosphopantetheinyl transferase YPA_2369 2657825 - 2657094 - | pyridoxal phosphate biosynthetic protein PdxJ YPA_2370 2658794 - 2658015 - | transposase/IS protein TERM 2926 2658713 - 2658727 + g 77 -11.4 -3.3506 | overlap 2658726 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_2371 2659816 - 2658794 - | transposase for insertion sequence IS100 TERM 2927 2659838 - 2659820 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_2372 2659906 - 2660640 + | hypothetical protein TERM 2928 2660670 - 2660651 - T 91 -7.2 -5.28176 | overlap 2660658 2660664 2660667 GGTAGGGATAAAAAA CAGATACC CGAA AGTATCTG TCAGACTGCTGACAA TERM 2929 2660759 - 2660733 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2660742, overlap 2660734 2660749 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2930 2660760 - 2660734 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2660742, overlap 2660733 2660749 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT proX 2661874 - 2660870 - | glycine betaine transporter periplasmic subunit TERM 2931 2661072 - 2661085 + g 80 -2.3 -5.4505 | overlap 2661059 TTGGCGGCTGCCGGA TTGGC TTCA GCCCA TTTTTTGTTCGCCAC YPA_2374 2663088 - 2661922 - | glycine betaine transporter membrane protein YPA_2375 2664280 - 2663081 - | glycine betaine/L-proline transport ATP-binding protein TERM 2932 2663349 - 2663360 + g 71 -5.8 -4.30576 | opp_overlap 2663349 CGTTCCAGCACATAA CCGT AATC ACGG TTTTCATCCTGAAGC TERM 2933 2664874 - 2664890 + r 80 -3.5 -5.37043 | GGCTAACTGCCTATT GGGGCTG AGT CTCCCCC TTTTTTATCTAGAAT nrdF 2665927 - 2664956 - | ribonucleotide-diphosphate reductase subunit beta YPA_2377 2668202 - 2666052 - | ribonucleotide-diphosphate reductase subunit alpha TERM 2934 2666763 - 2666750 - G 81 -5.9 -5.03314 | CCGAGCCGTAAAAAA GACGC TCCC GCGCC AGATAACCGTGCAGG nrdI 2668630 - 2668184 - | ribonucleotide reductase stimulatory protein YPA_2379 2668838 - 2668602 - | hypothetical protein TERM 2935 2669672 - 2669647 - g 90 -9 -4.63527 | gap 1, overlap 2669648 2669649 GCATCAGTTCAAAAA GC-GCCCGTGC AAAAA GCACAGGCAGC GAAAAAGCACCATAA YPA_2380 2669359 - 2669724 + | acid shock protein precursor TERM 2936 2669764 - 2669783 + F 100 -9.3 -5.63504 | opp_overlap 2669766 CAGGTTAATCCCAAT CACCCAC TTAATT GTGGGTG TTTTTTTATAAGCTT YPA_2381 2670202 - 2670360 + | hypothetical protein TERM 2937 2671604 - 2671625 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_2382 2670422 - 2671630 + | transposase for the IS285 insertion element YPA_2383 2671654 - 2671860 + | hypothetical protein YPA_2384 2672407 - 2671958 - | hypothetical protein TERM 2938 2672275 - 2672293 + g 74 -2.4 -5.10933 | opp_overlap 2672275, overlap 2672276 CCATCTCTTGCAACA TCGATTCA ATA TAAATCGG TTTTATTTTCAGTAG YPA_2385 2672910 - 2672572 - | hypothetical protein YPA_2386 2673418 - 2673630 + | cold shock protein TERM 2939 2673676 - 2673693 + F 100 -9.1 -6.25741 | opp_overlap 2673676 2673675 AAATAGATTTAGAAG CCTCGTC TTTT GACGGGG TTTTTTTTATTATTT TERM 2940 2674064 - 2674084 + F 72 -6.1 -4.35644 | opp_overlap 2674056 2674064 2674068, overlap 2674061 2674065 TAATAATCAAGCCAA TCAATAGCC TGG GGCTTTTGG TTCTTTTCTACTACT TERM 2941 2674480 - 2674491 + G 78 -2.2 -5.36441 | CCTTGGTGGCAACTG CGTT ATTG AGCG TTTTTTCTGTCCCAG TERM 2942 2675508 - 2675495 - g 90 -8.1 -5.05601 | CACCAGAGAGAAAAA TGGCC TACC GGCCA AGATAACGCTTTGGT YPA_2387 2674437 - 2676014 + | putative solute-binding protein YPA_2388 2675999 - 2676982 + | hypothetical protein TERM 2943 2677403 - 2677416 + G 70 -8.1 -3.69605 | TAGCATTAACCCACT GGCCA AAGC TGGCC TTGATTTTACGTGCC YPA_2389 2676979 - 2677785 + | binding-protein-dependent transport protein YPA_2390 2677785 - 2678591 + | putative transport ATPase YPA_2391 2678584 - 2679249 + | putative transport ATPase ureA 2680448 - 2680750 + | urease subunit gamma ureB 2680710 - 2681237 + | urease subunit beta TERM 2944 2681941 - 2681953 + G 71 -10.5 -3.14211 | opp_overlap 2681939, overlap 2681949 GAAAGGTAATTCATA CGGGC GCG GCCCG TTGCTGGAACAGGCT ureC 2681327 - 2683045 + | urease subunit alpha ureE 2683341 - 2684036 + | urease accessory protein UreE YPA_2396 2684058 - 2684744 + | urease accessory protein YPA_2397 2684871 - 2685533 + | urease accessory protein TERM 2945 2685922 - 2685902 - g 71 -6.2 -4.431 | overlap 2685916 CAGTCAGCCACAAAA GTTCACAT GATGA ATGCGAAC TACGCCTCGCAGATC YPA_2398 2685530 - 2686363 + | hypothetical protein YPA_2399 2686389 - 2686496 + | urease accessory protein TERM 2946 2686559 - 2686580 + F 84 -10.1 -3.86346 | opp_overlap 2686560 2686562, overlap 2686560 2686562 GTCAGTCTATTGAAT AGAGGCTGG GTAC CCAGCCTCG TTTATCAGCCAGTGA TERM 2947 2686579 - 2686560 - f 100 -13.6 -3.09327 | opp_overlap 2686560 2686559 2686562, overlap 2686562 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 2948 2686560 - 2686579 + F 100 -13.6 -2.91593 | opp_overlap 2686560 2686562, overlap 2686559 2686562 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 2949 2686577 - 2686562 - f 77 -10.4 -3.10522 | opp_overlap 2686562 2686560 2686559, overlap 2686560 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 2950 2686562 - 2686577 + F 76 -10.4 -3.00946 | opp_overlap 2686560 2686562, overlap 2686560 2686559 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 2951 2686798 - 2686822 + G 70 -4.3 -4.72986 | opp_overlap 2686801 2686804 TCAGGTAATGTTTCA GAATAACCC ATTGACC GGGCTATTC TTTTTCATCGCAATA YPA_2400 2686688 - 2687680 + | putative urea transporter TERM 2952 2687788 - 2687756 - f 73 -10 -2.93853 | gap 1, overlap 2687753 ATAGACCTCAAATTA TTGGCGTTATCG-TG TTGT CAGCGATAACGCCAG GTCAGAACGGGTAGG YPA_2401 2687829 - 2688887 + | putative nickel transport protein TERM 2953 2689008 - 2688967 - T 91 -10.3 -4.20918 | opp_overlap 2688971, overlap 2688969 2688971 GGGAAGGCTAACAAA TAGAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTTTT TTTTACAGGTTACAT TERM 2954 2689006 - 2688969 - T 100 -12.9 -3.70139 | opp_overlap 2688971, overlap 2688967 2688971 GAAGGCTAACAAATA GAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTT TTTTTTACAGGTTAC TERM 2955 2689004 - 2688971 - T 100 -15.5 -3.4214 | opp_overlap 2688971, overlap 2688969 2688967 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTTACAGGTT TERM 2956 2688971 - 2689004 + T 100 -15.5 -5.77853 | opp_overlap 2688969 2688967 2688971 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTTACAGGTT hdeB 2689385 - 2689056 - | acid-resistance protein TERM 2957 2690907 - 2690891 - g 71 -6.5 -4.13767 | overlap 2690894 GTTGCCACGCTAAAA TTAGCCG GTG CGGCGAA GGCAAAATATATTAT YPA_2403 2690003 - 2691178 + | voltage-gated potassium channel TERM 2958 2691239 - 2691218 - T 75 -7.3 -4.34402 | opp_overlap 2691218 GTGTTTATATCAAAA CACCCTC GGTTAAGT GAGGGTG TTTTTTTTGTCACGA TERM 2959 2691218 - 2691239 + T 100 -8 -5.93809 | opp_overlap 2691218 GTGTTTATATCAAAA CACCCTCG GTTAAG TGAGGGTG TTTTTTTTGTCACGA ccrB 2691680 - 2691276 - | camphor resistance protein CrcB YPA_2405 2692076 - 2691696 - | hypothetical protein TERM 2960 2691789 - 2691807 + g 73 -11 -2.92668 | overlap 2691784 TGCTCTGCCTCGGGC TGTGGCCA GTT TGGCCGCA TCTAATTGCATACTG YPA_2406 2692344 - 2692165 - | hypothetical protein YPA_2407 2693117 - 2693434 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB YPA_2408 2693445 - 2694806 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC YPA_2409 2694973 - 2695320 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA TERM 2961 2695685 - 2695715 + G 86 -6.8 -4.98061 | overlap 2695688 TGTCTCGGCCTATTG TGGCCTCTCAGGCG TAT CGCTTAAGAGGTGA TTTTCTTTCCTATAT TERM 2962 2695688 - 2695712 + G 75 -10.7 -3.34291 | overlap 2695685 CTCGGCCTATTGTGG CCTCTCAGGCG TAT CGCTTAAGAGG TGATTTTCTTTCCTA YPA_2410 2695369 - 2696199 + | DNA-binding transcriptional regulator ChbR TERM 2963 2696986 - 2696997 + G 72 -3.6 -4.8143 | GCGCAACGTGGTTAT CGGC TGGG GTCG TTTTTAGATTGTTAA YPA_2411 2696251 - 2697012 + | hypothetical protein TERM 2964 2697261 - 2697232 - T 100 -15.9 -2.91065 | opp_overlap 2697237, overlap 2697223 2697234 2697237 ATCATAGACATCACA GATAATGCCCCCA TTTT TAGGGGCATTATC CTACAAGAGGCGACT TERM 2965 2697259 - 2697234 - T 93 -12.7 -3.00259 | opp_overlap 2697237, overlap 2697223 2697232 2697237 CATAGACATCACAGA TAATGCCCCCA TTTT TAGGGGCATTA TCCTACAAGAGGCGA TERM 2966 2697256 - 2697237 - T 80 -10 -3.63762 | opp_overlap 2697237, overlap 2697223 2697234 2697232 AGACATCACAGATAA TGCCCCCA TTTT TAGGGGCA TTATCCTACAAGAGG YPA_2412 2697675 - 2697307 - | hypothetical protein TERM 2967 2698410 - 2698421 + G 74 -7.2 -4.27467 | opp_overlap 2698406 GCAGAACAGAGTAGG GCGG TTAA CCGC TTTATGTTGGTATTA YPA_2413 2698170 - 2698697 + | replication initiation regulator SeqA YPA_2414 2698728 - 2700413 + | phosphoglucomutase TERM 2968 2700468 - 2700491 + F 100 -11.8 -5.53079 | gap 1, opp_overlap 2700468 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT TERM 2969 2700491 - 2700468 - f 86 -11.8 -3.16564 | gap 1, opp_overlap 2700468 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT YPA_2415 2700631 - 2700744 + | hypothetical protein YPA_2416 2700787 - 2701029 + | hypothetical protein TERM 2970 2701092 - 2701075 - T 100 -11.3 -4.8622 | opp_overlap 2701068 2701078 TGGCGCAATTAAAAA TGACCGC TCAG GCGGTCA TCTAAGATTAATTTA YPA_2417 2701585 - 2701157 - | hypothetical protein YPA_2418 2702309 - 2701680 - | DNA-binding transcriptional activator KdpE TERM 2971 2702577 - 2702587 + r 82 -6.8 -4.77567 | overlap 2702574 CTTCGTTATTCTGTC TGCC GCG GGCA TTTTGTTATCAACCT YPA_2419 2705328 - 2702602 - | sensor protein KdpD TERM 2972 2702707 - 2702693 - G 78 -3.5 -5.08255 | opp_overlap 2702700, overlap 2702698 AGTGGCAAAACAAAA CGGAA GCTGG CTCCG CCCTCTTGACGCTTC TERM 2973 2703789 - 2703815 + g 76 -8 -4.15565 | opp_overlap 2703809 TTTCATACAGATGTC TGGCCCGTTGTT CCC GATAACGGGCAA TTTTAGCCTGATAGC TERM 2974 2703979 - 2703952 - G 70 -9.8 -3.2657 | overlap 2703947 2703966 AAAAAACAGATCGAA GCTGGCGACATT AATC ACCGCCGCCAGC ACTGAAGGCCAGCGG YPA_2420 2705988 - 2705338 - | potassium-transporting ATPase subunit C TERM 2975 2705813 - 2705829 + g 79 -12.3 -3.25942 | TTATCGCCCAGTCGC GCCAGTG AAC CACTGGC TTGCTGTGAAAACAT TERM 2976 2706018 - 2706045 + r 71 -9.8 -2.72855 | opp_overlap 2706017 2706018, overlap 2706020 TTTGTGTCTTAAAAC CGGCCACCGCAT CAGG GTGCGATGGCTG TGGTTAAACGGTTTA YPA_2421 2708218 - 2706152 - | potassium-transporting ATPase subunit B TERM 2977 2706741 - 2706779 + g 70 -9.5 -3.30441 | gap 1, opp_overlap 2706739, overlap 2706742 GCCAGAAAATCATCT ACGCC-AGCTTCAGCGGC AATT GCCGCTGCGGTTAGGCGA TTGTCACCGGTGATC TERM 2978 2706742 - 2706778 + g 76 -13 -2.5805 | gap 1, opp_overlap 2706739, overlap 2706741 CCAGAAAATCATCTA CGCC-AGCTTCAGCGGC AATT GCCGCTGCGGTTAGGCG ATTGTCACCGGTGAT TERM 2979 2707465 - 2707431 - G 83 -9.2 -4.40298 | opp_overlap 2707431, overlap 2707432 AGGCAAACCAATAAA GCGACTAGCACGGTGA TGG TCACCGGGCTACCGGC TTGGCTGGCCTCCAC TERM 2980 2707463 - 2707432 - G 73 -10.2 -3.23094 | gap 1, opp_overlap 2707431, overlap 2707431 GGCAAACCAATAAAG CGACTAGCACGGTGA TGG TCACCGGGCTA-CCG GCTTGGCTGGCCTCC YPA_2422 2710000 - 2708312 - | potassium-transporting ATPase subunit A TERM 2981 2709091 - 2709079 - G 70 -10.5 -2.93447 | overlap 2709078 CTAACGGGGATAAAT GCGGG TTT CCCGC CAGTTCGGCGTACAT TERM 2982 2709242 - 2709226 - G 70 -2.2 -4.92783 | AAGGGATCAGAAAAA TGGCCA GCATT TGGACA AAATTACTGAATGCA TERM 2983 2709942 - 2709926 - G 82 -7.9 -4.60924 | CAAACGTGCTAAAAA CCCACCC AAC GGACGGG ACAACACGAACAACA YPA_2423 2710090 - 2710001 - | K+-transporting ATPase, F subunit TERM 2984 2710269 - 2710289 + H 71 -6.9 -4.12225 | opp_overlap 2710268 2710271 TTGGTTTGTGAAACT TACTTTCAC CGG GTGAATGTA TTTGGTTTGCTAATT TERM 2985 2710657 - 2710643 - g 72 -3.5 -4.84359 | GTATCTGGATAAAAA CCAGT GATAA ACCGG TTTGGCTGACCCAAT YPA_2424 2710495 - 2710701 + | hypothetical protein TERM 2986 2710753 - 2710777 + F 100 -12.1 -5.16237 | TACAAAAAATAGCTG GCCCGTGAGTA TCA TGCCCACGGGC TTTTTTAATGCGCTT YPA_2425 2711040 - 2711522 + | hypothetical protein TERM 2987 2711937 - 2711951 + G 72 -3.5 -4.77165 | TTTTGTCAGCAACAG CAGGT CGATA GCCTG TTTTATTCTCAACAG TERM 2988 2712263 - 2712295 + G 74 -4 -4.91109 | opp_overlap 2712272, overlap 2712264 2712272 CCAGTTATTTCCTGC AGGGGAAGACGCTG CCTTA CAGCGTTTACGCCG TTTTTGTCGTGAACA YPA_2426 2711652 - 2713109 + | deoxyribodipyrimidine photolyase YPA_2427 2713100 - 2714137 + | putative 3',5'-cyclic-nucleotide phosphodiesterase YPA_2428 2714277 - 2715023 + | putative hydrolase-oxidase TERM 2989 2715045 - 2715065 + F 100 -13.3 -2.9518 | overlap 2715061 GGATAGGGCTATTTT CGCCGATGT TTA GCATCGGCG TGTCTCCGTCTTACA YPA_2429 2715642 - 2716187 + | hypothetical protein YPA_2430 2716230 - 2716298 + | putative carboxylase YPA_2431 2716292 - 2717242 + | hypothetical protein YPA_2432 2717239 - 2717976 + | hypothetical protein TERM 2990 2718653 - 2718679 + G 74 -7.3 -4.15841 | gap 1, overlap 2718656 CGGAACCATTGCATA TCGCGCTGTGGG GGAT CCCA-ACCGCGA TTTGTGCTTTCCTGA YPA_2433 2718061 - 2718792 + | hypothetical protein YPA_2434 2718789 - 2719310 + | hypothetical protein YPA_2435 2719258 - 2719809 + | hypothetical protein YPA_2436 2719819 - 2720466 + | pyrrolidone-carboxylate peptidase TERM 2991 2720505 - 2720478 - T 82 -10.6 -3.62597 | gap 1 CTGATCTTCCAATAA CCTCACGGCAGCC GAA GG-TGGCGTGAGG TTACAGACAACGTCC YPA_2437 2721243 - 2720557 - | uracil-DNA glycosylase TERM 2992 2721482 - 2721469 - H 73 -3.9 -5.0133 | overlap 2721473 GATGTGGTGAAAAAA TTGAT TTGA ATCAA AGAATGGTAGGGGCT YPA_2438 2721596 - 2721979 + | autonomous glycyl radical cofactor GrcA TERM 2993 2722028 - 2722043 + F 100 -10.4 -5.1675 | opp_overlap 2722026 AATCATAAAGTGATA GGGGAC TTCG GTCCCC TTTTTTCATGCCTGA YPA_2439 2722158 - 2723120 + | phospholipase A YPA_2440 2723198 - 2723854 + | putative phospholipase A accessory protein YPA_2441 2723832 - 2723957 + | hypothetical protein TERM 2994 2723964 - 2723947 - T 74 -4.8 -4.78237 | opp_overlap 2723942, overlap 2723942 2723934 TATCTGACAACAAAA CCGCTA TGTGAG CAGCGG CTTTGTTGTCGTGCA YPA_2442 2725310 - 2723985 - | ATP-dependent RNA helicase SrmB TERM 2995 2725076 - 2725091 + g 79 -5.4 -5.00616 | gap 1 GCGTCAGGATCAGGA TCCGCGG TGG CC-CGGA TTTTTTGCGGGGGAA YPA_2443 2725562 - 2726308 + | hypothetical protein TERM 2996 2726383 - 2726360 - T 83 -8.9 -4.08958 | gap 1, opp_overlap 2726359 AGCGTGAAATAAGAA TC-GGGCGTC GTAGA GACGCCCTGA GGTTATTGACAAAGT TERM 2997 2726458 - 2726484 + T 72 -10.1 -2.88849 | gap 1, overlap 2726453 2726459 ACATCTATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2998 2726459 - 2726485 + T 84 -10.1 -3.82218 | gap 1, overlap 2726453 2726458 CATCTATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2999 2726545 - 2726569 + T 79 -11.4 -2.56539 | overlap 2726544 2726542 GGTTTGTCAGCAGTC TGCGGGCGTC GTAGA GACGCCCTCA ATCTTATGGATTCAG YPA_2444 2728228 - 2726591 - | L-aspartate oxidase TERM 3000 2726808 - 2726818 + g 76 -6.8 -4.46212 | ATGCGCCGTAAAGCC CGCT CTA AGCG TTTTGTGGTACGGAC TERM 3001 2728066 - 2728056 - G 70 -2.4 -4.91109 | overlap 2728058 CCCTGAGCATAAAAA GTGG CTC CCTC ATTAAGAGGCCCTTT YPA_2445 2728416 - 2728991 + | RNA polymerase sigma factor RpoE YPA_2446 2729017 - 2729673 + | anti-RNA polymerase sigma factor SigE TERM 3002 2729762 - 2729729 - g 86 -13.3 -3.59979 | gap 1, opp_overlap 2729731 CCTGTTCATGGCAAA CATTGCT-TCGGCGGA ATC TACGCCGATAGCAATG TTGCAGGAAATGGGC rseB 2729673 - 2730629 + | periplasmic negative regulator of sigmaE TERM 3003 2731005 - 2730995 - g 71 -6.8 -4.26076 | TTACTGGCACGAAAA CTGG CAA CCAG AATTGAGGGGCTCAG YPA_2448 2730626 - 2731081 + | SoxR reducing system protein RseC YPA_2449 2731956 - 2731102 - | hypothetical protein TERM 3004 2731888 - 2731906 + g 70 -4.4 -4.64383 | opp_overlap 2731877, overlap 2731889 TATAGCTATTATTGT AGCAAGGG TAA CCCATGCA TTTTCATTTCTCATT TERM 3005 2731976 - 2731996 + H 75 -8.3 -3.80733 | CTCTCCTCGTTACCG CCAAGAGAA TAT TTCACTTGG TTATTATAAAATCAC TERM 3006 2732460 - 2732447 - H 73 -3.9 -5.01497 | ACGACTAGAGAAAAA TTCAT ATAA ATGAA GCACATAAGAAACTT YPA_2450 2732456 - 2734255 + | GTP-binding protein LepA YPA_2451 2734265 - 2735263 + | lsignal peptidase I rnc 2735615 - 2736295 + | ribonuclease III era 2736292 - 2737203 + | GTP-binding protein Era TERM 3007 2737354 - 2737367 + G 76 -8.1 -4.12599 | opp_overlap 2737354 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT TERM 3008 2737367 - 2737354 - g 76 -8.1 -4.27316 | opp_overlap 2737354 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT recO 2737213 - 2737938 + | DNA repair protein RecO TERM 3009 2738043 - 2738061 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2455 2738065 - 2739087 + | transposase for insertion sequence IS100 TERM 3010 2739168 - 2739154 - g 77 -11.4 -3.3506 | overlap 2739145 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2456 2739087 - 2739866 + | transposase/IS protein YPA_2457 2739882 - 2740364 + | phage family integrase YPA_2458 2740413 - 2740676 + | IS1400 transposase A YPA_2459 2740759 - 2740944 + | integrase TERM 3011 2741087 - 2741074 - f 78 -9.5 -3.737 | opp_overlap 2741072 2741069 CAACCTTCTACGAAA GGGGC GTTC GCCCC AATAGTTAATCAAGA YPA_2460 2742069 - 2742836 + | hypothetical protein YPA_2461 2743168 - 2743455 + | LexA regulated protein TERM 3012 2743467 - 2743510 + F 73 -6 -4.43859 | opp_overlap 2743448 2743474, overlap 2743474 CTAACCCTGTCGGTT ACCACAACAGCGTGGTGTAA GTGA TTACGCCACGCTGTTATTAC TTTTATGCCGTTATG TERM 3013 2743474 - 2743503 + F 100 -17.3 -3.9978 | opp_overlap 2743474, overlap 2743467 TGTCGGTTACCACAA CAGCGTGGTGTAA GTGA TTACGCCACGCTG TTATTACTTTTATGC TERM 3014 2743503 - 2743474 - f 100 -15.1 -3.40403 | opp_overlap 2743474 2743467 TGTCGGTTACCACAA CAGCGTGGTGTAA GTGA TTACGCCACGCTG TTATTACTTTTATGC YPA_2462 2743872 - 2744399 + | flavodoxin FldA TERM 3015 2744414 - 2744450 + F 71 -9.6 -3.06492 | opp_overlap 2744414 2744418, overlap 2744418 ATCTCCCCGCAACAA GAAACGCTCTGC GATAGTATTCACA GCAGAGCGTTTC TGTTCCAGTCACTGG TERM 3016 2744450 - 2744414 - f 100 -12.4 -3.61517 | opp_overlap 2744414 2744418, overlap 2744418 ATCTCCCCGCAACAA GAAACGCTCTGCGATA GTATT CACAGCAGAGCGTTTC TGTTCCAGTCACTGG TERM 3017 2744446 - 2744418 - f 78 -7.4 -4.44667 | opp_overlap 2744418 2744414, overlap 2744414 CCCCGCAACAAGAAA CGCTCTGCGATA GTATT CACAGCAGAGCG TTTCTGTTCCAGTCA fur 2744766 - 2745212 + | ferric uptake regulator TERM 3018 2745542 - 2745524 - T 100 -11.7 -5.40072 | TTTCGGGCAAAAAAA TCCCCGG ACCAG CCGGGGA AATACGATCAACTCA YPA_2464 2747755 - 2745653 - | Beta-N-acetylhexosaminidase TERM 3019 2746142 - 2746112 - GT 76 -10.4 -3.05844 | overlap 2746125 CGTTTCATTCCAAGA CTGACCGGAGATAC CCT GTACACCCGGCCAG GGTTTATCACTCTTC YPA_2465 2748317 - 2747694 - | hypothetical protein YPA_2466 2750066 - 2748645 - | hypothetical protein TERM 3020 2749690 - 2749708 + g 71 -7.4 -4.11623 | TCGTCCCAGCGGGTT TTGGCGTC ACT GAAGCCAA TTTCATTTGGTGCTG TERM 3021 2750749 - 2750730 - R 100 -10.7 -5.43414 | opp_overlap 2750728 ATCAGAGACAAAAAA GGCGTGG ACTGTG CCACGCC AATTGAATCTGAGCG YPA_2467 2752439 - 2750772 - | glutaminyl-tRNA synthetase TERM 3022 2752571 - 2752532 - R 100 -9.4 -4.88918 | gap 1, opp_overlap 2752542, overlap 2752535 2752539 2752541 2752542 TTACGGCAAACAAAA CA-ATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATG CGCCTATAAGGCTCT TERM 3023 2752567 - 2752535 - R 100 -11.3 -4.54026 | opp_overlap 2752542, overlap 2752532 2752539 2752541 2752542 CGGCAAACAAAACAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3024 2752563 - 2752539 - R 100 -9.9 -4.78266 | opp_overlap 2752542, overlap 2752535 2752532 2752541 2752542 AAACAAAACAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3025 2752561 - 2752541 - R 100 -12.5 -3.95309 | opp_overlap 2752542, overlap 2752539 2752535 2752532 2752542 ACAAAACAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3026 2752542 - 2752560 + r 100 -16 -4.8048 | opp_overlap 2752541 2752539 2752535 2752532 2752542 CAAAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3027 2752560 - 2752542 - R 100 -16 -2.94745 | opp_overlap 2752542, overlap 2752541 2752539 2752535 2752532 CAAAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2468 2753099 - 2752641 - | transposase for the IS1541 insertion element TERM 3028 2753230 - 2753212 - R 100 -16 -3.07307 | opp_overlap 2753212 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3029 2753212 - 2753230 + r 100 -16 -4.36914 | opp_overlap 2753212 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3030 2753250 - 2753273 + r 100 -15.4 -3.4052 | opp_overlap 2753250 CTGGGCACAAAAAAA CGGGAAGAGA TCGC TCTCTTCCCG TTGGTTCGATTAAAA TERM 3031 2753273 - 2753250 - R 100 -15.4 -5.60993 | opp_overlap 2753250 CTGGGCACAAAAAAA CGGGAAGAGA TCGC TCTCTTCCCG TTGGTTCGATTAAAA YPA_2469 2755397 - 2753364 - | pts system, N-acetylglucosamine-specific IIABC component nagB 2755797 - 2756597 + | glucosamine-6-phosphate deaminase TERM 3032 2756989 - 2756979 - g 80 -2.4 -5.42862 | ATATCTGCAAAAAAA CCAG CAT CAGG CGCTCGGCTTGCACC nagA 2756617 - 2757762 + | N-acetylglucosamine-6-phosphate deacetylase YPA_2472 2757740 - 2759005 + | putative N-acetylglucosamine regulatory protein TERM 3033 2759350 - 2759336 - g 80 -4.2 -5.06451 | CAGGATGGCAAAAAA GCCTAT GTT ATTGGC GAGGGTGCTTTAGTT YPA_2473 2759078 - 2759830 + | UMP phosphatase asnB 2760185 - 2761849 + | asparagine synthetase B TERM 3034 2761880 - 2761863 - T 78 -9.8 -3.53189 | AATTGAACACGATAA GCGGGG TTAATC CCCCGC GCCGACTGCTGACAA TERM 3035 2762057 - 2762033 - T 79 -11.4 -2.50385 | opp_overlap 2762033, overlap 2762032 2762028 2762036 ATAGAGAATAGATAG CAAGGTCGCC TCTGG GGCGGCCTTG TTTTTTTACGTCACC TERM 3036 2762033 - 2762057 + T 100 -14.3 -5.47218 | opp_overlap 2762032 2762028 2762033 2762036 ATAGAGAATAGATAG CAAGGTCGCCT CTG GGGCGGCCTTG TTTTTTTACGTCACC TERM 3037 2762568 - 2762530 - T 79 -11.7 -2.53911 | opp_overlap 2762521 2762533 CCAAGCGGTAAGGCA CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG TATCCCAGCCATCTT TERM 3038 2762726 - 2762688 - T 79 -11.7 -2.53911 | opp_overlap 2762691 CCAAGCGGTAAGGCA CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG TATCCCAGCCATACA TERM 3039 2762953 - 2762938 - T 73 -6 -4.51196 | opp_overlap 2762938, overlap 2762933 GCCAAATTTAGAAAA GCTCGC TTCG GCGGGC TTTTTGCTTTTTCAT TERM 3040 2762938 - 2762953 + T 100 -8.2 -5.1971 | opp_overlap 2762933 2762938 GCCAAATTTAGAAAA GCTCGC TTCG GCGGGC TTTTTGCTTTTTCAT TERM 3041 2763126 - 2763102 - T 100 -16.5 -2.73364 | overlap 2763118 CCGTCAGCGGAATGA TGAGCCCGGCA GAA TACCGGGCTCA GGCAGAAAGGCAGTA ubiF 2764485 - 2763304 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 3042 2764515 - 2764530 + H 70 -5.4 -4.52589 | opp_overlap 2764529, overlap 2764516 AAAAGTGAATGTACT TCTTGC ATTA GCAAGG TTTTGTCTAACCGCA YPA_2477 2764712 - 2766151 + | putative tRNA-thiotransferase TERM 3043 2766225 - 2766248 + F 86 -6.7 -5.07652 | opp_overlap 2766227, overlap 2766227 TCCCGCCCGCGTAAC GAGGCACTG CATTGT CAGTGCCTG TTTTATTTTAGCGGG TERM 3044 2766227 - 2766246 + F 85 -9.3 -4.16397 | opp_overlap 2766227, overlap 2766225 CCGCCCGCGTAACGA GGCACTG CATTGT CAGTGCC TGTTTTATTTTAGCG YPA_2478 2766478 - 2767551 + | hypothetical protein YPA_2479 2767548 - 2768021 + | putative metalloprotease TERM 3045 2768289 - 2768279 - gf 73 -5.4 -4.64676 | overlap 2768280 TGATTCTGAACAAAA CGAT CTG ATCG ATCCCGATACCCGAG YPA_2480 2768139 - 2769017 + | hypothetical protein TERM 3046 2769049 - 2769075 + GF 84 -11.6 -3.11701 | overlap 2769060 2769062 GCTCTATTCCTCCAA CGCCAGTGGG TTCGCGC CCTACTGGCG CTATTTTTTGGTGCC TERM 3047 2769060 - 2769078 + GF 86 -5.9 -5.17353 | overlap 2769049 2769062 CCAACGCCAGTGGGT TCGCGCC CTACT GGCGCTA TTTTTTGGTGCCTGT TERM 3048 2769062 - 2769076 + GF 79 -8.5 -4.2131 | overlap 2769049 2769060 AACGCCAGTGGGTTC GCGCC CTACT GGCGC TATTTTTTGGTGCCT lnt 2768986 - 2770572 + | apolipoprotein N-acyltransferase TERM 3049 2770791 - 2770803 + F 74 -4.1 -4.97666 | TAGTGCTTCCAGTCA CAGAT AAC GTCTG TTTTTCTCATCTGTT TERM 3050 2770845 - 2770865 + F 79 -11.2 -3.11178 | TCTATTTATACCTGA TAGCCCTG CACTC CAGGGCTA TATTCCGCTTAGTTC TERM 3051 2771475 - 2771459 - g 73 -5.1 -4.7416 | opp_overlap 2771462 GCAAAAGGTTAAAAA CAACGGT GTT ATCGTTG TGGGCCACCGTGAAT TERM 3052 2771780 - 2771769 - g 80 -4.4 -5.1675 | opp_overlap 2771770 2771771, overlap 2771771 TTACTCACCAAAAAA GACT CTGA AGTC AAAGACTTCAAAGAT TERM 3053 2771793 - 2771771 - g 91 -11.4 -4.2131 | opp_overlap 2771770 2771771, overlap 2771769 ACTCACCAAAAAAGA CTCTGAAGTC AAA GACTTCAAAG ATTTGGCAGGTAAAG YPA_2482 2771337 - 2772254 + | glutamate and aspartate transporter subunit TERM 3054 2772285 - 2772267 - f 77 -10.2 -3.07102 | overlap 2772264 TAACAATAATAATCA GGGCGGGT CAT ACCTGCCC TACCGATTGATGATG TERM 3055 2772345 - 2772319 - f 100 -15.2 -2.69468 | opp_overlap 2772319, overlap 2772316 TATTGGTAGACAGGA TGCGGGGTGG TCGTTCC CCACCCCGCA TTTTTTTGTCAACCC TERM 3056 2772319 - 2772345 + F 100 -15.2 -5.60993 | opp_overlap 2772319 2772316 TATTGGTAGACAGGA TGCGGGGTGG TCGTTCC CCACCCCGCA TTTTTTTGTCAACCC YPA_2483 2772428 - 2773168 + | putative glutamate/aspartate transport system permease YPA_2484 2773168 - 2773842 + | putative glutamate/aspartate transport system permease YPA_2485 2773842 - 2774567 + | putative glutamate/aspartate transport ATP-binding protein TERM 3057 2774572 - 2774603 + T 87 -5 -5.49579 | overlap 2774573 2774576 TCTTGCATTAATTCG TTCTCCTCCCCTGC GTTT GTAGGGGAGGTCAC TTTTATTTTTTATGA TERM 3058 2774573 - 2774602 + T 75 -8.5 -3.87307 | overlap 2774572 2774576 CTTGCATTAATTCGT TCTCCTCCCCTGC GTTT GTAGGGGAGGTCA CTTTTATTTTTTATG TERM 3059 2774576 - 2774599 + T 100 -14.6 -2.95933 | overlap 2774573 2774572 GCATTAATTCGTTCT CCTCCCCTGC GTTT GTAGGGGAGG TCACTTTTATTTTTT YPA_2486 2775183 - 2774701 - | hypothetical protein TERM 3060 2777369 - 2777352 - g 70 -3.4 -4.85599 | opp_overlap 2777356 GTCATGGTAGAAAAA TACGGC GCGGAT ACCGTA CGTCTGTTTATGATG leuS 2775444 - 2778026 + | leucyl-tRNA synthetase TERM 3061 2778068 - 2778102 + G 71 -6.3 -4.34402 | ATTCTGACGTTGTTG CTGGGGTTGGCGGTG CTGGT CACCGCTGGCTGCGG TTTTAATCTGCGGGG YPA_2488 2778041 - 2778664 + | LPS-assembly lipoprotein RplB TERM 3062 2778689 - 2778716 + G 77 -9 -3.98649 | opp_overlap 2778685, overlap 2778690 ACCCTGAACAACTTG TCGCGCAGCTCC ATGA GGGGCTACGCGC TTGTTATCTATTGTG TERM 3063 2778690 - 2778715 + G 78 -12.5 -2.98105 | opp_overlap 2778685, overlap 2778689 CCCTGAACAACTTGT CGCGCAGCTCC ATGA GGGGCTACGCG CTTGTTATCTATTGT holA 2778661 - 2779695 + | DNA polymerase III subunit delta nadD 2779685 - 2780347 + | nicotinic acid mononucleotide adenylyltransferase YPA_2491 2780571 - 2780888 + | hypothetical protein YPA_2492 2780892 - 2781362 + | SPOUT methyltransferase superfamily protein TERM 3064 2781823 - 2781810 - g 86 -8.1 -4.62471 | GCTAACTTTGAAAAA GAGCG CAAA CGCTC ACGTCGCTTTACCTC TERM 3065 2782519 - 2782493 - g 72 -3.6 -4.77036 | GGTTATCACCAAAAA CACCAGCCTG TTCGATC CTGGTTGGTG GCAACTGCCCGGTTC TERM 3066 2783142 - 2783165 + G 73 -8.9 -3.78022 | GTGGCAGAACACCTG CGCGACCAT AAGTTA ATGGTTGCG TTTGCTCCCTATGAG YPA_2493 2781444 - 2783339 + | penicillin-binding protein 2 TERM 3067 2784024 - 2784034 + G 70 -8.2 -3.76767 | overlap 2784022 2784023 ATCAATTCTGGTTGC GGCC TCC GGCC TGTTTGTGTTGTTCC YPA_2494 2783524 - 2784636 + | cell wall shape-determining protein YPA_2495 2784646 - 2785728 + | rare lipoprotein A TERM 3068 2785808 - 2785826 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2496 2785830 - 2786852 + | transposase for insertion sequence IS100 TERM 3069 2786933 - 2786919 - g 77 -11.4 -3.3506 | overlap 2786910 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2497 2786852 - 2787631 + | transposase/IS protein TERM 3070 2787768 - 2787731 - f 100 -14.3 -5.14163 | opp_overlap 2787728 2787742 2787763 ACTGACTAATAAAAA TAACCGTAACCGCCTGT GCAA ACAGGGTGTTACGGTTA AAACTGTTTGGGTGA YPA_2498 2788090 - 2789292 + | D-alanyl-D-alanine carboxypeptidase fraction A TERM 3071 2789396 - 2789425 + F 72 -6.3 -4.3739 | opp_overlap 2789397, overlap 2789402 TATCTGGCGAACAGT ACGTCACTCCCGC TCCG GCGGGAGTTGTGA TTTTATAGCCGGATA TERM 3072 2789402 - 2789419 + F 100 -12.7 -3.72405 | opp_overlap 2789397, overlap 2789396 GCGAACAGTACGTCA CTCCCGC TCCG GCGGGAG TTGTGATTTTATAGC YPA_2499 2789490 - 2789753 + | hypothetical protein lipB 2789965 - 2790666 + | lipoyltransferase TERM 3073 2790832 - 2790820 - f 80 -6.3 -4.90013 | GAATTTAATGAAAAA TCTCA AGT TGAGA GATTCAGAACTGGAA YPA_2501 2790859 - 2791824 + | lipoyl synthase TERM 3074 2791858 - 2791840 - T 74 -9.6 -3.38046 | opp_overlap 2791840, overlap 2791825 2791838 2791841 GCGGTAGGCTAAAGA CTTCAGCC CAT GGCTGAAA TAACTTATTACACCT TERM 3075 2791857 - 2791841 - T 76 -10.9 -2.62613 | opp_overlap 2791840, overlap 2791825 2791840 2791838 CGGTAGGCTAAAGAC TTCAGCC CAT GGCTGAA ATAACTTATTACACC TERM 3076 2791896 - 2791916 + T 100 -11.9 -5.93809 | opp_overlap 2791896 GCAGCCACCAAAAAA CGGATTTCC ATT GGAGATCCG TTTTTTTTATCAGCC TERM 3077 2791916 - 2791896 - T 100 -9.7 -5.1675 | opp_overlap 2791896 GCAGCCACCAAAAAA CGGATTTCC ATT GGAGATCCG TTTTTTTTATCAGCC tatE 2792262 - 2792005 - | twin argininte translocase protein A YPA_2503 2792829 - 2793212 + | hypothetical protein TERM 3078 2793597 - 2793614 + T 100 -9.8 -4.61231 | opp_overlap 2793597 GCTACCCATAAAAAA CCCGCC CAGTAA GGCGGG TTTTTAAAGATATGG TERM 3079 2793614 - 2793597 - T 100 -10.5 -5.28176 | opp_overlap 2793597 GCTACCCATAAAAAA CCCGCCC AGTA AGGCGGG TTTTTAAAGATATGG cspE 2793844 - 2793635 - | cold shock protein CspE YPA_2505 2794111 - 2794602 + | hypothetical protein YPA_2506 2795519 - 2794902 - | LuxR family regulatory protein TERM 3080 2795310 - 2795289 - G 81 -5.7 -5.05505 | opp_overlap 2795289 2795308, overlap 2795294 ATCACAAATCAAAAA GACATCCGC TTCT GCGGGGGTC TTATCCAGACGTTTG TERM 3081 2795410 - 2795434 + g 91 -2.9 -5.78622 | overlap 2795412 TAGAATTTAATCTCT TTTTTAAATCC TAA GGATGTGAAGA TTTTTTTTACGATAG YPA_2507 2796053 - 2796907 + | hypothetical protein YPA_2508 2796984 - 2797271 + | hypothetical protein YPA_2509 2797483 - 2797289 - | hypothetical protein YPA_2510 2797926 - 2798213 + | hypothetical protein YPA_2511 2800019 - 2798229 - | putative ABC transport protein TERM 3082 2799667 - 2799645 - G 70 -10.6 -2.94695 | overlap 2799647 2799649 CTCAATAGATAATGA TAGACCGCCA GTC TGGCGCTCTA GGTGAAACCGCAAAC YPA_2512 2800084 - 2800386 + | hypothetical protein TERM 3083 2800516 - 2800505 - T 75 -3 -5.24551 | opp_overlap 2800505 TCAAACGAATAAAAA CAAA GAAA TTTG GTTATTTACAATGAA YPA_2513 2801404 - 2800589 - | hypothetical protein TERM 3084 2801274 - 2801250 - G 70 -9.9 -3.1944 | opp_overlap 2801269, overlap 2801242 ATCAAAACCAGGCAA CGCTCATCGGG AAC CGCGGTGAGCG TCAGTGGCTGCCCTT YPA_2514 2802472 - 2801414 - | hypothetical protein TERM 3085 2801620 - 2801631 + g 71 -5.8 -4.31329 | CACTCAACACCGCGT CCAG AAAA CTGG TTTTACGGTTTTTGA YPA_2515 2803257 - 2802487 - | putative carbohydrate kinase TERM 3086 2803156 - 2803145 - GR 70 -5.8 -4.25104 | overlap 2803146 GCGTCCTGACCAAAA GTGC CATC GCAC AGCAGCCCCGCTTTC YPA_2516 2804320 - 2803199 - | putative carbohydrate kinase TERM 3087 2803978 - 2803991 + gr 74 -3.7 -5.05601 | TACTCAGGAGTACCA GCGCC GTGA GCCGC TTTTTATCTGTGGTC YPA_2517 2805485 - 2804352 - | hypothetical protein YPA_2518 2806537 - 2805509 - | sugar transport system permease protein TERM 3088 2806458 - 2806447 - G 74 -2.2 -5.1244 | overlap 2806450 GCAGGAACATAAAAA TCAG GACG CCGA AGCGTTCAAAAAAAG YPA_2519 2808096 - 2806549 - | sugar transport ATP-binding protein YPA_2520 2809074 - 2808145 - | putative sugar-binding periplasmic protein TERM 3089 2808851 - 2808836 - G 70 -3.2 -4.84311 | gap 1, opp_overlap 2808844, overlap 2808837 GGCGAGACAATAAAA CCCTGCG CGC CAC-GGG TGATGGCATTTTCCA YPA_2521 2809709 - 2809200 - | putative myo-inositol 2-dehydrogenase YPA_2522 2810185 - 2809676 - | hypothetical protein YPA_2523 2812425 - 2810479 - | putative thiamine pyrophosphate-dependent protein TERM 3090 2811327 - 2811303 - G 76 -12.9 -2.70932 | overlap 2811305 CTTTGGCCTCAATGA TATCGCCCTGC CAA GCAGTGCGATA ACCTGCCAGCCCTTC TERM 3091 2811325 - 2811305 - G 73 -11.1 -2.90075 | overlap 2811303 TTGGCCTCAATGATA TCGCCCTGC CAA GCAGTGCGA TAACCTGCCAGCCCT TERM 3092 2811583 - 2811565 - G 70 -11 -2.5655 | overlap 2811564 GCCAGTGACACCAAT TCCCCCCA AGT TGAGGGGA TGATCACTTGGCAGC YPA_2524 2813965 - 2812439 - | putative aldehyde dehydrogenase YPA_2525 2814271 - 2815125 + | hypothetical protein TERM 3093 2815287 - 2815309 + T 72 -6.2 -4.40358 | overlap 2815290 TGAACTTAACGTAGC CAGGGCGTGT GGA ACATGCCTAG TTTTCTAAGCTGCCT YPA_2526 2815511 - 2815314 - | hypothetical protein YPA_2527 2815693 - 2816247 + | hypothetical protein TERM 3094 2816302 - 2816280 - f 77 -10.6 -3.14344 | TACTTGCTGTACCAA CGCCCTGAAA CGC TCTCAGGGCA TGACTCTGCCATAGC TERM 3095 2817893 - 2817875 - g 79 -11 -3.61894 | AATCTGCTGCAACAA TCAACGCC GCT GGCGCTGA CCCTCAATGAGGCCG TERM 3096 2818729 - 2818712 - g 71 -5.5 -4.56597 | opp_overlap 2818715, overlap 2818717 TTCCTGGTGGAAAAA GAAGGGG ATGT CTCCTTC CTGCCCACCCGAGCC YPA_2528 2816654 - 2822632 + | hypothetical protein TERM 3097 2822670 - 2822640 - f 83 -9 -4.23434 | gap 1, overlap 2822643 2822644 CAAAATAGCTGAAAA CAAC-GCGCCCCG CATCGC CGGGGCGCTATCG GATTTCAGCCGTAAC TERM 3098 2822666 - 2822643 - f 93 -10.9 -4.2142 | overlap 2822640 2822644 AATAGCTGAAAACAA CGCGCCCCG CATCGC CGGGGCGCT ATCGGATTTCAGCCG TERM 3099 2822665 - 2822644 - f 100 -14.4 -3.11767 | overlap 2822643 2822640 ATAGCTGAAAACAAC GCGCCCCG CATCGC CGGGGCGC TATCGGATTTCAGCC YPA_2529 2822689 - 2823567 + | hypothetical protein TERM 3100 2824783 - 2824804 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPA_2530 2823601 - 2824809 + | transposase for the IS285 insertion element TERM 3101 2825700 - 2825721 + G 74 -7.2 -4.15114 | CAACAGCGCCTTTGT CGGTGCCG ATGCCG CCGCACCG TTATTCTTTAATATT YPA_2531 2824966 - 2826375 + | hypothetical protein TERM 3102 2826547 - 2826521 - T 95 -8.1 -5.16237 | gap 2 AAGGGGATCAAAAAA GCCCCAC-A-GGT CAC ACCATTGTGGGGC AGCAATCTCGCGTTT YPA_2532 2826833 - 2826588 - | putative DNA-binding protein TERM 3103 2827282 - 2827258 - H 73 -5.7 -4.44355 | opp_overlap 2827258, overlap 2827260 TAATTCTAAAAATAA GTTGAATGGCT CAT ACCCATTCAGC TCTGGTCATCTTCTT TERM 3104 2827295 - 2827307 + H 78 -4.1 -5.24551 | overlap 2827303 AGCTCTGGTCATCTT CTTCG TAA TGAAG TTTTTCTTCATTTAA TERM 3105 2827744 - 2827758 + G 100 -5.7 -5.76949 | CTATTTTTTCCTGTA CCGAT CCCAC ATCGG TTTTTTTTGGAAGTC YPA_2533 2827506 - 2828087 + | hypothetical protein YPA_2534 2828159 - 2828362 + | hypothetical protein YPA_2535 2828355 - 2828756 + | hypothetical protein YPA_2537 2829010 - 2829390 + | hypothetical protein YPA_2538 2829974 - 2829402 - | hypothetical protein TERM 3106 2829462 - 2829481 + g 73 -10.8 -3.25823 | opp_overlap 2829456 2829455 2829453 TATAAATATGTTCAA GCACACTT GAAA AAGTGTGC TTGATATCAGAAACG YPA_2539 2830249 - 2829998 - | hypothetical protein YPA_2540 2830527 - 2830288 - | hypothetical protein TERM 3107 2831253 - 2831275 + H 78 -9.8 -3.54926 | opp_overlap 2831257, overlap 2831251 GATAAACATAACGTT CAAACCGTCC CAA GGGCGGTGTG TCTCTTTTTACAATG TERM 3108 2831888 - 2831865 - g 82 -11.8 -3.53012 | gap 1, opp_overlap 2831856 2831864 2831875 CGGGTCTGGTCGAAA TCG-GCCCTTC CTG GAAGGGCACGA GTATCGTGCCGCTTC YPA_2541 2831336 - 2833252 + | putaive autotransporter protein TERM 3109 2833367 - 2833341 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2833350, overlap 2833342 2833357 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3110 2833368 - 2833342 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2833350, overlap 2833341 2833357 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3111 2833444 - 2833465 + F 91 -6.5 -5.56264 | opp_overlap 2833441, overlap 2833447 CTTTGTCAATAACCT CAGCCCCTC TTCT GAGGGGTTA TTTTTTCTATTTCAC TERM 3112 2833447 - 2833462 + F 100 -10.4 -4.8277 | opp_overlap 2833441, overlap 2833444 TGTCAATAACCTCAG CCCCTC TTCT GAGGGG TTATTTTTTCTATTT TERM 3113 2833518 - 2833506 - f 95 -3.4 -6.28631 | TAAATTAAAAAAAAA TGCT CAGTC AGCA AGATAATTTCCACAA YPA_2542 2833787 - 2834368 + | hypothetical protein YPA_2543 2834691 - 2834383 - | hypothetical protein TERM 3114 2834796 - 2834775 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_2544 2835978 - 2834770 - | transposase for the IS285 insertion element YPA_2545 2836233 - 2836394 + | hypothetical protein TERM 3115 2837004 - 2837015 + G 80 -3 -5.36441 | CGGTCTCTTTCTCAC TGTT CGAC AACA TTTTTTATCTCAACA YPA_2546 2836430 - 2838637 + | hypothetical protein YPA_2547 2838630 - 2839160 + | hypothetical protein TERM 3116 2839192 - 2839179 - f 82 -2.3 -5.72254 | overlap 2839184 TTAAACAATAAAAAA GAACC GTCT GGCCC CATGCCAACCCGTTA YPA_2548 2839319 - 2841700 + | putative beta-glucosidase YPA_2549 2843407 - 2841779 - | hypothetical protein TERM 3117 2842583 - 2842597 + g 70 -3.4 -4.8066 | AGCCCCCAGTAATAG CGGCGC ATC GGGCTG TTTTTGCATTGTCTT YPA_2550 2843707 - 2843564 - | hypothetical protein YPA_2551 2843880 - 2844731 + | putative aldo/keto reductase TERM 3118 2845592 - 2845570 - g 78 -6.2 -4.82901 | opp_overlap 2845553 TTGTTGGCACAAAAA CCTTGGATTG TGC CAATCCCCGG AACCACAAAACTGCA YPA_2552 2844757 - 2845746 + | putative aldo/keto reductase TERM 3119 2845775 - 2845800 + T 100 -13.4 -3.15544 | opp_overlap 2845770 2845769 TCGCTCAAATTTCAT CTGGCTTACG ATAATC CGTAAGCCAG TTAATCCGAATAACG YPA_2553 2846694 - 2845801 - | LysR family transcriptional regulator TERM 3120 2846766 - 2846784 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2554 2846788 - 2847810 + | transposase for insertion sequence IS100 TERM 3121 2847891 - 2847877 - g 77 -11.4 -3.3506 | overlap 2847868 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2555 2847810 - 2848589 + | transposase/IS protein TERM 3122 2848774 - 2848757 - T 86 -7.7 -4.61231 | gap 1, opp_overlap 2848757 2848757, overlap 2848759 TTAGACCCCCAAAAA CGGGAAGC CCT GCT-CCCG GTATTCGATTTCAGC YPA_2556 2849261 - 2848956 - | hypothetical protein YPA_2557 2849759 - 2849358 - | hypothetical protein TERM 3123 2849685 - 2849665 - G 79 -7.5 -4.58236 | TACAAAAGATTAAAA GCCAGCACC AGC GGTGGTAGC GTTAATAAGGCGAAA YPA_2558 2851060 - 2849741 - | putative dual specificity phosphatase YPA_2559 2852816 - 2851053 - | hypothetical protein TERM 3124 2852772 - 2852754 - G 74 -9.6 -3.64716 | opp_overlap 2852760, overlap 2852752 2852757 CCAGTGGCGAAAATA CAACGATG TTT CATCGCTG GCGGTGAACATGCCT YPA_2560 2853445 - 2852813 - | putative acyltransferase YPA_2561 2854384 - 2853455 - | putative phosphatidate cytidylyltransferase YPA_2562 2854979 - 2854377 - | putative CDP-alcohol phosphatidyltransferase TERM 3125 2856559 - 2856518 - g 70 -10.3 -2.91702 | opp_overlap 2856523, overlap 2856523 AACACGATAAAATAT TAAAATGGCCGGAAGTTAA TGAT TTAGCTTACGGCCATTTTT TATGGCTCCCTGAAT TERM 3126 2856523 - 2856554 + G 100 -12.4 -5.28176 | opp_overlap 2856518 2856523 GATAAAATATTAAAA TGGCCGGAAGTTAA TGAT TTAGCTTACGGCCA TTTTTTATGGCTCCC TERM 3127 2856554 - 2856523 - g 91 -10.2 -4.58236 | opp_overlap 2856523, overlap 2856518 GATAAAATATTAAAA TGGCCGGAAGTTAA TGAT TTAGCTTACGGCCA TTTTTTATGGCTCCC YPA_2563 2856481 - 2856594 + | hypothetical protein YPA_2564 2856632 - 2857129 + | hypothetical protein TERM 3128 2857897 - 2857913 + F 85 -7.2 -4.89567 | TAAATCACTACCTGA CCCGTC TAAAT GGCGGG TTTTGTATTTTAAGC YPA_2565 2858239 - 2859105 + | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YPA_2566 2859120 - 2859332 + | hypothetical protein TERM 3129 2859361 - 2859347 - T 83 -11.4 -3.02263 | opp_overlap 2859346 ATAGCCGTTGTAATA GCCAGC ATT GCTGGC CTATTGAACAATAAA TERM 3130 2859401 - 2859377 - T 100 -9.9 -4.46854 | opp_overlap 2859380, overlap 2859379 2859380 CTATTGAACAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3131 2859399 - 2859379 - T 100 -12.5 -3.83566 | opp_overlap 2859380, overlap 2859377 2859380 ATTGAACAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3132 2859380 - 2859398 + T 100 -16 -4.8048 | opp_overlap 2859379 2859377 2859380 TTGAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3133 2859398 - 2859380 - T 100 -16 -2.89055 | opp_overlap 2859380, overlap 2859379 2859377 TTGAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2567 2859937 - 2859479 - | transposase for the IS1541 insertion element TERM 3134 2860050 - 2860068 + r 100 -16 -4.36914 | opp_overlap 2860050 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3135 2860068 - 2860050 - R 100 -16 -3.07307 | opp_overlap 2860050 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3136 2860088 - 2860118 + r 100 -9.1 -5.56568 | gap 1, opp_overlap 2860088 2860090, overlap 2860090 CTGGGCACAAAAAAA TCGCGGTTACTGGT AAAC ACCAG-AACCGCAA TTTTTTTAGTACTAT TERM 3137 2860118 - 2860088 - R 100 -11.3 -5.60993 | gap 1, opp_overlap 2860088 2860090, overlap 2860090 CTGGGCACAAAAAAA TCGCGGTTACTGGT AAAC ACCAG-AACCGCAA TTTTTTTAGTACTAT TERM 3138 2860090 - 2860116 + r 83 -11.7 -2.94304 | gap 1, opp_overlap 2860088 2860090, overlap 2860088 GGGCACAAAAAAATC GCGGTTACTGGT AAAC ACCAG-AACCGC AATTTTTTTAGTACT TERM 3139 2860116 - 2860090 - R 83 -11.7 -2.96801 | gap 1, opp_overlap 2860090 2860088, overlap 2860088 GGGCACAAAAAAATC GCGGTTACTGGT AAAC ACCAG-AACCGC AATTTTTTTAGTACT cysS 2861669 - 2860284 - | cysteinyl-tRNA synthetase TERM 3140 2860696 - 2860708 + g 70 -10.5 -2.87931 | GCGTTAGCATCAGTA CCGCG CAG CGCGG TATATAAACGCTCCA TERM 3141 2860731 - 2860717 - G 71 -7.8 -4.03413 | AGCGCGGTATATAAA CGCTCC AGT GAAGCG CGTGCCTGCTTCAGA YPA_2569 2861880 - 2862374 + | peptidyl-prolyl cis-trans isomerase B (rotamase B) TERM 3142 2862430 - 2862446 + G 86 -9.4 -4.5538 | opp_overlap 2862430, overlap 2862424 CTCAGCGTTCAGGAA CCGGCA ATCAC TGCCGG TTTTCTGCATTTTAT TERM 3143 2862586 - 2862605 + G 71 -6.4 -4.36914 | opp_overlap 2862589, overlap 2862589 CTGAAATCACTCCAA CAACAGGG GGTG CCCTGTTA TTTTATCCACGGGAA TERM 3144 2862602 - 2862589 - g 70 -8.1 -3.67134 | opp_overlap 2862589 2862586 AAATCACTCCAACAA CAGGG GGTG CCCTG TTATTTTATCCACGG TERM 3145 2862589 - 2862602 + G 79 -8.1 -4.30995 | opp_overlap 2862589, overlap 2862586 AAATCACTCCAACAA CAGGG GGTG CCCTG TTATTTTATCCACGG YPA_2570 2862385 - 2863107 + | UDP-2,3-diacylglucosamine hydrolase YPA_2571 2863403 - 2863927 + | phosphoribosylaminoimidazole carboxylase catalytic subunit PurE YPA_2572 2863924 - 2864988 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 3146 2865019 - 2864995 - T 86 -9.9 -4.04491 | overlap 2864992 AAGTTATAACAAGAA GCGGGCGGC CTCTGCT GCTGCCCGC GAATAAAATCCACTA YPA_2573 2867461 - 2865032 - | putative permease TERM 3147 2866894 - 2866911 + g 76 -7.7 -4.38712 | gap 1 AAGTCAAACGGCTAC CCGGTTGC ACC GCA-CCGG TTTTCTCGACATCAG TERM 3148 2867239 - 2867216 - G 73 -10.2 -3.24422 | opp_overlap 2867233, overlap 2867214 2867213 CATGGTCAAAAATGA GAGTTGGCGG CTAA CCGCCAGCCC CTGCTGCTTCGCTTC YPA_2574 2868144 - 2867458 - | putative ABC transporter ATP-binding protein YbbA YPA_2575 2868112 - 2868750 + | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 TERM 3149 2868844 - 2868815 - fH 86 -5.7 -5.26316 | gap 1, opp_overlap 2868815, overlap 2868821 2868822 TCAGGCTAGAAAAAA GGGA-AAGCGCACT AAA AGTGCGGTAATCCC TTCGCTTACCAATCA TERM 3150 2868836 - 2868822 - fH 73 -10 -3.03344 | opp_overlap 2868815, overlap 2868821 2868815 AGAAAAAAGGGAAAG CGCACT AAA AGTGCG GTAATCCCTTCGCTT YPA_2576 2869137 - 2869913 + | short chain dehydrogenase TERM 3151 2870042 - 2870075 + G 70 -3.2 -4.8048 | opp_overlap 2870038 ACCTGCACCAAGCCA TAGAACAATCCATG TCAGTT CCTGTGTTGTTCTA TTTTTGGTCTGAACG TERM 3152 2870175 - 2870205 + G 71 -7.7 -4.07647 | gap 2 TCTGGCCCGTGTCGA TTGCGATGCACAACC CAT GGT-G-GCGTCGCAA TTTGGTTTACGCTCT YPA_2577 2869990 - 2870859 + | putative thioredoxin TERM 3153 2870910 - 2870932 + F 100 -13.4 -4.52703 | overlap 2870929 TACCATCATTTGCTA CTGCGCGGGG CAA TCCTGCGCAG TTTTATGCTGCTTTC YPA_2578 2871054 - 2871968 + | hypothetical protein YPA_2579 2871971 - 2872420 + | hypothetical protein TERM 3154 2872515 - 2872470 - T 100 -13.5 -3.80114 | opp_overlap 2872477, overlap 2872461 2872474 2872476 2872477 CAGCAAGGCAGTAAA CAAACAGCCCGAATCACTTAC TCTG GTAGGTGATTCGGGTTATTTA TCACGGCAGCGTATT TERM 3155 2872511 - 2872474 - T 100 -12.1 -4.5123 | opp_overlap 2872477, overlap 2872461 2872470 2872476 2872477 AAGGCAGTAAACAAA CAGCCCGAATCACTTAC TCTG GTAGGTGATTCGGGTTA TTTATCACGGCAGCG TERM 3156 2872509 - 2872476 - T 100 -12.5 -3.85603 | opp_overlap 2872477, overlap 2872461 2872474 2872470 2872477 GGCAGTAAACAAACA GCCCGAATCACTTAC TCTG GTAGGTGATTCGGGT TATTTATCACGGCAG TERM 3157 2872508 - 2872477 - T 100 -16 -2.90639 | opp_overlap 2872477, overlap 2872461 2872476 2872474 2872470 GCAGTAAACAAACAG CCCGAATCACTTAC TCTG GTAGGTGATTCGGG TTATTTATCACGGCA TERM 3158 2872477 - 2872508 + T 100 -18.2 -4.06419 | opp_overlap 2872461 2872476 2872474 2872470 2872477 GCAGTAAACAAACAG CCCGAATCACTTAC TCTG GTAGGTGATTCGGG TTATTTATCACGGCA YPA_2580 2872948 - 2872529 - | putative regulatory protein TERM 3159 2872810 - 2872779 - G 100 -13.8 -4.14739 | gap 1, opp_overlap 2872778 2872776 TCATCCAGTGTAAAA CCCAC-TTGCCGCGC CTG GCGCAGCAACGTGAG CTCTTCAATATGTTT TERM 3160 2872861 - 2872876 + g 100 -4.6 -6.13503 | opp_overlap 2872863, overlap 2872863 CGTTATCCGTGCGAA CAGGTG GCGT CACCAG TTTTTTTTCTTCATA TERM 3161 2872908 - 2872920 + g 91 -5.5 -5.40474 | AAACGAATGGCTTTG CTGGT TAA ACCGG TTTTTTTCGCAACAT TERM 3162 2873661 - 2873646 - g 71 -6.8 -4.15222 | opp_overlap 2873638, overlap 2873647 AGTTCCGGCAACAAA CGTGGC TTTA GCCACA AGTACGGTTTCTGAT TERM 3163 2874312 - 2874276 - g 70 -4.9 -4.59773 | overlap 2874277 2874278 GGTCAGCCTGAAAAA TGGCAGTGCGACCATGG ATA CCTTGGTCGCTCTGGGG ACAGGTGCGGCCTGG TERM 3164 2874310 - 2874278 - g 73 -11.9 -2.61004 | overlap 2874277 2874276 TCAGCCTGAAAAATG GCAGTGCGACCATGG ATA CCTTGGTCGCTCTGG GGACAGGTGCGGCCT TERM 3165 2874933 - 2874957 + G 75 -10.7 -3.45118 | overlap 2874935 ACCCCAGTTGGTCTA TACCCTGGTGG TGG CCACCACGGTG TTAATTATCGCCTGC TERM 3166 2874935 - 2874955 + G 76 -11.1 -3.29593 | overlap 2874933 CCCAGTTGGTCTATA CCCTGGTGG TGG CCACCACGG TGTTAATTATCGCCT YPA_2581 2873155 - 2876040 + | copper exporting ATPase TERM 3167 2876054 - 2876092 + F 100 -17.6 -2.5547 | opp_overlap 2876043, overlap 2876054 AAATGCTTTCAGTGA CCTCAATGGCGCACAATA TCG TTTTGTGCGCCATTGAGC GTTGATATCCAAAAT TERM 3168 2876054 - 2876093 + F 100 -17.4 -3.2614 | gap 1, opp_overlap 2876043, overlap 2876054 AAATGCTTTCAGTGA C-CTCAATGGCGCACAATA TCG TTTTGTGCGCCATTGAGCG TTGATATCCAAAATG YPA_2582 2876561 - 2877370 + | hypothetical protein TERM 3169 2877397 - 2877376 - f 100 -10.9 -5.87996 | CAATCAATAAAAAAA TGGCCGATA TCAC TACCGGCCA GTCAAAGAGGAATTT YPA_2583 2877625 - 2878113 + | hypothetical protein TERM 3170 2878194 - 2878180 - f 73 -7.2 -4.10437 | overlap 2878192 CTATGAAGGAAAGAA TGAGTT TAA AACTCA TCAGACTGCTGACAA TERM 3171 2878283 - 2878257 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2878266, overlap 2878258 2878273 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3172 2878284 - 2878258 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2878266, overlap 2878257 2878273 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPA_2584 2878450 - 2878689 + | hypothetical protein YPA_2585 2879416 - 2878793 - | hypothetical protein YPA_2586 2880378 - 2879410 - | 5'-nucleotidase/2' 3'-cyclic phosphodiesterase YPA_2587 2880448 - 2880191 - | protein UshA precursor: UDP-sugar hydrolase (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) TERM 3173 2881522 - 2881537 + G 70 -2.6 -5.00196 | TCGGTACAAAGTGCC CAGATA CACC TATTTG TTTTCTTATTTGCGG YPA_2588 2880730 - 2881944 + | putative membrane efflux protein TERM 3174 2883211 - 2883222 + G 82 -7.2 -4.68908 | opp_overlap 2883210 AGTTTGGCACAAATC GGCG AGTT CGCC TTTATTTTGGCTGGG YPA_2589 2882179 - 2883870 + | putative cation:proton antiport protein TERM 3175 2883947 - 2883913 - T 100 -13.6 -5.06816 | opp_overlap 2883915 2883916, overlap 2883916 ACTCTGTAATAAAAA CAATCAGGGCCAGCTT ACT ATGCTGGCCCTGACTT ATATCCCGCGTCTAC TERM 3176 2883915 - 2883945 + T 100 -14 -3.49102 | opp_overlap 2883913 2883916, overlap 2883916 TCTGTAATAAAAACA ATCAGGGCCAGCTT ACT ATGCTGGCCCTGAC TTATATCCCGCGTCT TERM 3177 2883944 - 2883916 - T 100 -17.5 -4.63592 | opp_overlap 2883916 2883915, overlap 2883913 CTGTAATAAAAACAA TCAGGGCCAGCTT ACT ATGCTGGCCCTGA CTTATATCCCGCGTC TERM 3178 2883916 - 2883944 + T 100 -17.5 -2.6914 | opp_overlap 2883913 2883916, overlap 2883915 CTGTAATAAAAACAA TCAGGGCCAGCTT ACT ATGCTGGCCCTGA CTTATATCCCGCGTC YPA_2590 2885271 - 2883967 - | inosine-guanosine kinase TERM 3179 2884415 - 2884404 - G 71 -7.2 -4.03413 | overlap 2884405 ATCCCGCCATATAAA GCCC GCTG GGGC CTGCGGTACATAACA TERM 3180 2885457 - 2885421 - R 74 -6.6 -4.39426 | gap 1, opp_overlap 2885426, overlap 2885426 TACAGGGTGATAAAA CAGAACGGCCAGATGAG AAAC CTCACCCAGCCGTTA-G ATAAATTCGTTTAAA TERM 3181 2885453 - 2885426 - R 100 -12 -4.02581 | opp_overlap 2885426, overlap 2885421 GGTGATAAAACAGAA CGGCCAGATGAG AAAC CTCACCCAGCCG TTAGATAAATTCGTT YPA_2591 2886626 - 2885475 - | ferric enterobactin transport protein FepE YPA_2592 2888047 - 2886674 - | phosphomannomutase YPA_2593 2888795 - 2888052 - | glycosyltransferase TERM 3182 2888365 - 2888344 - G 76 -4.4 -4.96848 | overlap 2888347 CGTTTCATATAAAAA GTAGGATG GGGAGG CATCCAAC CATACTTCATTTTTT TERM 3183 2888462 - 2888477 + g 70 -4.7 -4.60924 | opp_overlap 2888462 GTAAGTCACCATATA CAGCA TCACAT TGCTG TTTTTCAAAGGTTTC YPA_2594 2890204 - 2888798 - | mannose-1-phosphate guanylyltransferase YPA_2595 2891370 - 2890405 - | GDP-fucose synthetase YPA_2596 2892062 - 2891376 - | GDP-mannose 4,6-dehydratase YPA_2597 2892498 - 2891980 - | hypothetical protein YPA_2598 2893527 - 2892514 - | putative mannosyltransferase YPA_2599 2894708 - 2893776 - | O-unit polymerase-like protein TERM 3184 2894118 - 2894106 - G 76 -6.3 -4.67755 | ATAGTCAGGGAAAAA TGCAA GCA TTGCA GAATTATTCAGTGCG TERM 3185 2894632 - 2894614 - G 76 -6 -4.63863 | opp_overlap 2894618, overlap 2894618 GTAATAGAAAAAGAA TATAGCAC TGG GTGCTGTA ATAGAAAATATGGGA YPA_2600 2896136 - 2894994 - | putative mannosyltransferase TERM 3186 2895056 - 2895046 - G 83 -5.4 -5.09762 | ATCGTAATATAAAAA GAAC CAG GTTC ATCATCAGTAATATA TERM 3187 2895141 - 2895153 + g 100 -4.9 -5.95286 | GGGGATTTTTAATTT TATAG CTT CTATA TTTTTTATTTTTACT YPA_2602 2898478 - 2897240 - | putative O-unit flippase TERM 3188 2897402 - 2897364 - G 100 -15.7 -4.2535 | overlap 2897352 ACACCATATTTAAAA TGGACTGATAACATTAT GGATA ATAATATTATCAGTCCA CCAGAAAATAACGAT YPA_2603 2899940 - 2898657 - | hypothetical protein TERM 3189 2898813 - 2898865 + g 84 -2 -5.64006 | gap 1, opp_overlap 2898808 TACTACATTACCCCA TGGGAGACGCTTGTGATGCAAGAAA ACAA TATCTT-CATCATTTGCAACTCCCA TTTTTTTCATTGCAT YPA_2604 2900798 - 2899941 - | paratose synthase TERM 3190 2900824 - 2900809 - R 100 -9 -5.58454 | opp_overlap 2900808 2900809 2900811 TTCATATTAAAAAAA GAGGCA GTGT TGCCTC CTTGCTCCTGTTAAA YPA_2605 2902148 - 2900835 - | putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase YPA_2606 2903104 - 2902166 - | CDP-glucose 4,6-dehydratase YPA_2607 2903240 - 2903097 - | hypothetical protein YPA_2608 2904030 - 2903245 - | glucose-1-phosphate cytidylyltransferase TERM 3191 2904040 - 2904055 + r 72 -6.2 -4.25256 | CTCCATTACGTATTA CTTTGA TCTC TCAAAG TTATTTTGATGGCAC YPA_2609 2905045 - 2904056 - | CDP-6-deoxy-delta-3,4-glucoseen reductase TERM 3192 2904481 - 2904467 - G 85 -7.8 -4.90266 | opp_overlap 2904467 TTCACGAACGAAAAA GGTCCC TTG AGGACC TTCAATTCGTAAAAG TERM 3193 2905125 - 2905113 - R 80 -2.7 -5.53288 | CTTAAGTCAAAAAAA TTCAG TGA CTAAA ATAGAAACAAAAAAG hemH 2906605 - 2905643 - | ferrochelatase TERM 3194 2906679 - 2906649 - R 100 -17 -3.59979 | opp_overlap 2906656, overlap 2906668 2906669 CCTTCTTACTTGAAA TAGCTAAGGCGGCC TTA AACCGCCTTAGCTA TAAGGCCATCCAGAA adk 2907339 - 2906695 - | adenylate kinase TERM 3195 2907553 - 2907525 - R 91 -6.8 -5.56673 | gap 1, opp_overlap 2907525 AGGTACAATAAAAAA CACCCTTG-GCAA TACG TTGAACAAGGGTG TTTTTTTATCGATTA TERM 3196 2907525 - 2907553 + r 100 -6.8 -5.66684 | gap 1, opp_overlap 2907525 AGGTACAATAAAAAA CACCCTTG-GCAA TACG TTGAACAAGGGTG TTTTTTTATCGATTA YPA_2612 2909440 - 2907566 - | heat shock protein 90 TERM 3197 2909242 - 2909211 - G 74 -9.6 -3.57792 | opp_overlap 2909209, overlap 2909238 TCACTCAGGGTTAAA GTACGTTTCTCTTT ATCA AAAGATAAACGCAC TCTCAGTTCGCCATC YPA_2613 2909617 - 2909459 - | hypothetical protein recR 2910237 - 2909632 - | recombination protein RecR TERM 3198 2910261 - 2910292 + r 73 -3.6 -4.98672 | CATCTTAAAGCCTGG TGGCAATTGCATCC CATT GGATACAGAGGCCA TTTTCTCTTTTTGCG YPA_2615 2910569 - 2910237 - | hypothetical protein TERM 3199 2910496 - 2910508 + g 76 -3.4 -5.17353 | TTGGCGACTTCTTCC TGCA TCTGC TGCA TTTTTTCCTGCATCT YPA_2616 2912601 - 2910625 - | DNA polymerase III subunits gamma and tau TERM 3200 2911126 - 2911152 + g 79 -7.3 -4.46675 | overlap 2911116 TTGATTTTTCGCGGT CCAGCGATAAG CTTCT TTTTTCGCTGG TTTCTTCTCTTCCGT TERM 3201 2911229 - 2911270 + g 100 -10 -5.58179 | overlap 2911198 2911235 AAACGCTCCAGTGCT GAGTTTGCCGGCCGCGCT TTTCCT GGCGCCGCCGGCTCATTC TTTTTTGTTGTGGTC TERM 3202 2911235 - 2911264 + g 86 -14.2 -3.2756 | overlap 2911229 TCCAGTGCTGAGTTT GCCGGCCGCGCT TTTCCT GGCGCCGCCGGC TCATTCTTTTTTGTT TERM 3203 2913107 - 2913093 - R 75 -5.7 -4.58424 | TATGACGATATAAAA CCAGA GTTTG TCTGG CTGGAATACCTTAAC YPA_2617 2913820 - 2913257 - | adenine phosphoribosyltransferase YPA_2618 2914439 - 2914059 - | hypothetical protein TERM 3204 2914487 - 2914472 - H 76 -7.6 -4.15222 | opp_overlap 2914471 ACTTTCGTCAAGAAA GCGTTA TCAT TAACGC ATGTAGTGCCGACCA TERM 3205 2915048 - 2915034 - g 74 -7.8 -4.21343 | TCCAAGACAGAGAAA GCCAAC TGG GTCGGC AGAGTTTGTTAGTTG YPA_2619 2914640 - 2915176 + | primosomal replication protein n'' YPA_2620 2915347 - 2915502 + | hypothetical protein YPA_2621 2917116 - 2915842 - | putative potassium efflux system TERM 3206 2917226 - 2917244 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2622 2917248 - 2918270 + | transposase for insertion sequence IS100 TERM 3207 2918351 - 2918337 - g 77 -11.4 -3.3506 | overlap 2918328 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2623 2918270 - 2919049 + | transposase/IS protein YPA_2624 2921272 - 2919059 - | putative potassium efflux system YPA_2625 2921813 - 2921460 - | hypothetical protein YPA_2626 2922482 - 2921826 - | DNA-binding transcriptional repressor AcrR TERM 3208 2922369 - 2922341 - G 77 -9.5 -3.74747 | overlap 2922344 TGAAGTGCCAGTAAA TAGCGCCTCGGGT TAC ACCCGCAGCGATA GCAATATCGGTAAGA TERM 3209 2922366 - 2922344 - G 70 -11.2 -2.66873 | overlap 2922341 AGTGCCAGTAAATAG CGCCTCGGGT TAC ACCCGCAGCG ATAGCAATATCGGTA TERM 3210 2922656 - 2922638 - g 78 -6 -4.77438 | ATCTATGAGCAAAAA CAGAGG GGTAATG CCTCTG GCTGCAATTCTGGTA YPA_2627 2922627 - 2923814 + | multidrug efflux protein TERM 3211 2923957 - 2923918 - g 85 -12.3 -3.78775 | CTTGCGATCATGAAA TTACCAGTAGCGCAATA TCCGAC CATTGCGCCACCGGCAA TTACAATTGCCGCCA YPA_2628 2923831 - 2926983 + | multidrug efflux protein TERM 3212 2927016 - 2927031 + F 100 -11.8 -5.1356 | opp_overlap 2927016 TCATTTCATACTAAA GGCCGC GCAA GCGGCC TTTTTATTGCTGAGC TERM 3213 2927031 - 2927016 - f 100 -11.8 -3.83998 | opp_overlap 2927016 TCATTTCATACTAAA GGCCGC GCAA GCGGCC TTTTTATTGCTGAGC rpmE2 2927168 - 2927428 + | 50S ribosomal protein L31 type B rpmJ 2927444 - 2927587 + | 50S ribosomal protein L36 TERM 3214 2927708 - 2927680 - f 73 -7.4 -4.10161 | gap 1, opp_overlap 2927680 CATCAGTCCCCAAAA GGCCCTTTGTGCA CTAA CGC-CAACGGGCC TTTTTATTCATTTGC TERM 3215 2927680 - 2927708 + F 88 -6.7 -5.24551 | gap 1, opp_overlap 2927680 CATCAGTCCCCAAAA GGCCCTTTGTGC ACTAAC GC-CAACGGGCC TTTTTATTCATTTGC TERM 3216 2928647 - 2928637 - g 76 -5.4 -4.8048 | overlap 2928621 2928622 TCTTGAGATTAAAAA TCTC AAA GAGA ACCAGTATTCAATGA TERM 3217 2928665 - 2928681 + G 70 -8.1 -3.71745 | opp_overlap 2928663, overlap 2928664 CAGTATTCAATGACT TACCAAT ATA ATTGGTA TATTTTCAATGCTTG YPA_2631 2928461 - 2928814 + | hypothetical protein YPA_2632 2928973 - 2929341 + | hypothetical protein YPA_2633 2929390 - 2929593 + | hemolysin expression-modulating protein TERM 3218 2929929 - 2929913 - f 76 -6.6 -4.46652 | TAAATAAAAATCAAA CCATTC GTTCA GAATGG GAGGAATCTTATTTT TERM 3219 2929999 - 2929988 - f 79 -3 -5.27335 | TGCCGGAAATAAAAA TCTA CTGA TAGA GAGCGTTCACGACAA YPA_2634 2930415 - 2930870 + | putative 6-O-methylguanine DNA methyltransferase family protein YPA_2635 2931527 - 2931006 - | putative lipoprotein TERM 3220 2931362 - 2931376 + g 77 -11.4 -3.44146 | opp_overlap 2931358 2931356 GTTCACGAATATTCA CGGTCC CAT GGACCG TTGATTGTGCGACCG TERM 3221 2931948 - 2931932 - g 74 -6.5 -4.41616 | ATGCTGCGAAACAAA CCGTCCC CGC AGAACGG ACTGTTCACTCATTT YPA_2636 2931784 - 2932644 + | acyl-CoA thioesterase II TERM 3222 2932695 - 2932740 + T 72 -7.5 -4.04089 | opp_overlap 2932700 2932702 2932705 2932707, overlap 2932703 2932705 CAGTTGATGAATCAA TGAAATAGCACAGGGGCGATG TCAC CATCGCCCCTGTAGTTCATCA TTATTATGTATTTTT TERM 3223 2932735 - 2932700 - T 100 -12.6 -4.01419 | opp_overlap 2932695 2932703 2932705, overlap 2932702 2932705 2932707 GATGAATCAATGAAA TAGCACAGGGGCGATG TCAC CATCGCCCCTGTAGTT CATCATTATTATGTA TERM 3224 2932733 - 2932702 - T 100 -15.2 -3.59031 | opp_overlap 2932695 2932703 2932705, overlap 2932700 2932705 2932707 TGAATCAATGAAATA GCACAGGGGCGATG TCAC CATCGCCCCTGTAG TTCATCATTATTATG TERM 3225 2932703 - 2932733 + T 100 -16.3 -3.34242 | gap 1, opp_overlap 2932702 2932700 2932705 2932707, overlap 2932695 2932705 GAATCAATGAAATAG C-ACAGGGGCGATG TCAC CATCGCCCCTGTAG TTCATCATTATTATG TERM 3226 2932705 - 2932730 + T 100 -19.1 -2.8293 | opp_overlap 2932702 2932700 2932705 2932707, overlap 2932703 2932695 ATCAATGAAATAGCA CAGGGGCGATG TCAC CATCGCCCCTG TAGTTCATCATTATT TERM 3227 2932730 - 2932705 - T 100 -19.1 -2.906 | opp_overlap 2932705 2932703 2932695, overlap 2932702 2932700 2932707 ATCAATGAAATAGCA CAGGGGCGATG TCAC CATCGCCCCTG TAGTTCATCATTATT TERM 3228 2932728 - 2932707 - T 100 -15.9 -2.9955 | opp_overlap 2932705 2932703 2932695, overlap 2932705 2932702 2932700 CAATGAAATAGCACA GGGGCGATG TCAC CATCGCCCC TGTAGTTCATCATTA YPA_2637 2934193 - 2932904 - | ammonium transporter YPA_2638 2934571 - 2934233 - | nitrogen regulatory protein P-II 2 TERM 3229 2934365 - 2934390 + g 74 -4.1 -5.00138 | gap 1 AATCACTTCGTCTAA TTGATCATCGGC GAT GGCGAT-ATCAA TTTTTACTTTGGGTA TERM 3230 2934968 - 2934947 - R 100 -13.7 -4.22554 | TGAGTCAATAAATAA CGTGGGGCG ACAT CACCCCACG CGTGCTGCTTAACTC YPA_2639 2936800 - 2934977 - | putative multidrug transporter membrane\ATP-binding components TERM 3231 2935211 - 2935226 + g 73 -3.2 -5.0538 | opp_overlap 2935213 2935214, overlap 2935213 AAGGCGATGAGCAAT AACCAC CAGC GTGGTA TTTTTTCGAATCACC YPA_2640 2938559 - 2936793 - | putative multidrug transporter membrane\ATP-binding components TERM 3232 2937005 - 2937018 + g 74 -2.3 -5.12707 | CGGTACGCTGTTCGC CCCAC TCGC GTAGG TTTTTTAAAATTTCA TERM 3233 2937947 - 2937966 + g 82 -12.2 -3.61398 | opp_overlap 2937943 TCATGCGAATACTGG TCAGGCTC TCTT GAGCCTGA TTATTAAGCAAAGAA YPA_2641 2939122 - 2938661 - | transcription regulator AsnC TERM 3234 2939601 - 2939612 + G 73 -5.8 -4.43844 | opp_overlap 2939589, overlap 2939594 AATCACCTTCTACGG TGGC CGTT GCCA TTTTGTCGATCATGC YPA_2642 2939248 - 2940288 + | putative pyridoxal-phosphate dependent protein TERM 3235 2940448 - 2940412 - T 100 -10.3 -4.74013 | TTCAAAGAGATAAAA GCGGTTTGTCAGC TAGGCATGAAC ACTGACAAACCGC CTACGGAAGAAAAAA TERM 3236 2940480 - 2940465 - T 100 -6.1 -5.8187 | TACGGAAGAAAAAAA CCGGA TGGTTC TCCGG CTGGCTAATAGCTAT YPA_2643 2941321 - 2940500 - | putative haloacid dehalogenase-like hydrolase TERM 3237 2942369 - 2942358 - g 71 -5.8 -4.29326 | GGTAAATTCAACAAA TGGC AGTT GCCA GCATCCGGTTCGCAT TERM 3238 2942936 - 2942918 - g 74 -2.4 -5.19212 | overlap 2942919 ACCAGCAGCAAAAAA CGCTGA CCTTCAT TCAGCA GATAGAAAGCGCGCC YPA_2644 2941426 - 2943129 + | hypothetical protein YPA_2645 2943394 - 2944092 + | queuosine biosynthesis protein QueC YPA_2646 2944585 - 2944178 - | hypothetical protein TERM 3239 2944818 - 2944775 - R 83 -8.8 -4.08945 | gap 1, opp_overlap 2944806 2944807 ATTATGTTGGTAAAA GCCGCCAGACCAATACCTACC GAT GGCCAGCACC-GCCTGGCGGC TTGATTTACCAACTT YPA_2647 2945385 - 2944939 - | hypothetical protein TERM 3240 2945248 - 2945263 + g 74 -2.4 -5.07107 | overlap 2945234 2945250 AGCGCCGTTATCTGC GGCGCT ATTA GGCGAC TTTTTTGAGACTTTA TERM 3241 2945467 - 2945490 + r 100 -15.4 -4.68384 | opp_overlap 2945471, overlap 2945471 AGATCACAGATATGC GAAAGGTCGC CAAA GCGACCTTTC TTTTATTACATCGGT TERM 3242 2945471 - 2945486 + r 100 -10.4 -4.88795 | opp_overlap 2945471, overlap 2945467 CACAGATATGCGAAA GGTCGC CAAA GCGACC TTTCTTTTATTACAT TERM 3243 2945486 - 2945471 - R 82 -10.4 -3.66139 | opp_overlap 2945471 2945467 CACAGATATGCGAAA GGTCGC CAAA GCGACC TTTCTTTTATTACAT YPA_2648 2947411 - 2945525 - | peptidyl-prolyl cis-trans isomerase (rotamase D) TERM 3244 2946258 - 2946268 + g 74 -4.6 -4.81083 | opp_overlap 2946255 TGTAGCGCATAATAA GCGT CAA GCGC TTTTTCCTGCTTAAG TERM 3245 2947608 - 2947627 + r 70 -9.3 -2.81609 | opp_overlap 2947608, overlap 2947607 2947621 CTAAGCGAAAAAAAA GCGCATC ATAAAC GATGCGC CTTGTATCTTACCTT TERM 3246 2947627 - 2947608 - R 100 -10 -5.86332 | opp_overlap 2947608 2947607 2947621 CTAAGCGAAAAAAAA GCGCATCA TAAA CGATGCGC CTTGTATCTTACCTT YPA_2649 2947984 - 2947712 - | transcriptional regulator HU subunit beta TERM 3247 2948168 - 2948141 - R 72 -6.3 -4.25873 | opp_overlap 2948141 GCGGCACAAAAAATA GCTGGCAAGCA GGATTT CACTTACCAGC ATTAGTTTTATCAAT YPA_2650 2950610 - 2948202 - | DNA-binding ATP-dependent protease La TERM 3248 2950104 - 2950114 + g 100 -5.4 -5.83226 | opp_overlap 2950096 CAGCGAAGCCAGCAC TTCC GGC GGAA TTTTTTTGTTCAGTT TERM 3249 2950717 - 2950699 - R 100 -13.2 -4.91852 | opp_overlap 2950699 GCGAGGAAAAAGAAA TGGGGGAT AAA ATCCCCCA TTGTCATACTAACTG TERM 3250 2950699 - 2950717 + r 100 -13.2 -3.44527 | opp_overlap 2950699 GCGAGGAAAAAGAAA TGGGGGAT AAA ATCCCCCA TTGTCATACTAACTG clpX 2952022 - 2950751 - | ATP-dependent protease ATP-binding subunit clpP 2952851 - 2952228 - | ATP-dependent Clp protease proteolytic subunit TERM 3251 2952679 - 2952666 - G 76 -6.7 -4.56597 | opp_overlap 2952666 CTCGGCTTCCAAAAA CAGCA TCTG TGCTG TGATTAGGTTAGCCA TERM 3252 2953258 - 2953233 - R 100 -11.1 -5.50723 | opp_overlap 2953233 TTACCAAAAGAAAAA GCCCGTGACCA ATAA TGGCGACGGGC TTAATCAATCAAAAT TERM 3253 2953295 - 2953273 - R 95 -9.2 -4.4959 | overlap 2953275 CTTAATCAATCAAAA TACTGAATGG GTC CCATCCAGCA TCATGCGCTGAAAAA TERM 3254 2953293 - 2953275 - R 81 -9.6 -3.85043 | overlap 2953273 TAATCAATCAAAATA CTGAATGG GTC CCATCCAG CATCATGCGCTGAAA tig 2954617 - 2953313 - | trigger factor TERM 3255 2954967 - 2954942 - R 91 -10.5 -4.12532 | opp_overlap 2954948, overlap 2954944 2954948 TCGCCTATACAGAAA CACAAACGGCC CTAG AGCCGTTTGTA AAATTCTCATCTACT TERM 3256 2954965 - 2954944 - R 84 -10.9 -3.65996 | opp_overlap 2954948, overlap 2954942 2954948 GCCTATACAGAAACA CAAACGGCC CTAG AGCCGTTTG TAAAATTCTCATCTA TERM 3257 2954961 - 2954948 - R 73 -5.9 -4.44187 | opp_overlap 2954948, overlap 2954944 2954942 ATACAGAAACACAAA CGGCC CTAG AGCCG TTTGTAAAATTCTCA YPA_2654 2955354 - 2955034 - | transcriptional regulator BolA YPA_2655 2955703 - 2956281 + | hypothetical protein TERM 3258 2956386 - 2956358 - f 73 -8.2 -3.65991 | gap 1, opp_overlap 2956356 AGTTGCTCAACAGAA TGCTCTGCC-CGA TACC TTGCGGCAGAGCA GGTAGATTTATTATG TERM 3259 2956605 - 2956623 + G 73 -5.9 -4.58395 | overlap 2956608 TTGGTCCCCGCTGAT GGACCGC TACAC GCCGTCC TTTTTAGGGCGTCGG TERM 3260 2957527 - 2957545 + G 73 -3 -4.91194 | overlap 2957529 GCCGGTTGGTTTGTA GAGGCC CATGGCT GGCCAC TTTTCTATTTATTCT ampG 2956399 - 2957877 + | muropeptide transporter TERM 3261 2957900 - 2957927 + F 86 -3.4 -5.59879 | CATAAGTGACATAAA GCCGGTGC TGTTCAGTTTGT GCACTGGC TTTTTTGTGTTTATC TERM 3262 2958015 - 2958029 + F 85 -2.1 -5.75342 | TAAATCACAACTTTT CATGT TTGTT GCATG TTTTTTTTAAAAAAA YPA_2657 2958169 - 2958936 + | hypothetical protein TERM 3263 2958983 - 2958948 - f 72 -7.1 -4.04295 | opp_overlap 2958948 2958949 2958951, overlap 2958951 CTAACTATAACTAAA TGATTCCGAGGTG-CCT ATTT AGGACACCTCGAAAT-A TATTTTAATTTACCT TERM 3264 2958951 - 2958981 + F 73 -9.1 -3.51998 | gap 1, opp_overlap 2958948 2958951, overlap 2958949 2958948 ACTATAACTAAATGA TTCCGAGGTG-CCT ATTT AGGACACCTCGAAA TATATTTTAATTTAC TERM 3265 2958981 - 2958951 - f 83 -11.3 -3.05266 | gap 1, opp_overlap 2958951 2958949 2958948, overlap 2958948 ACTATAACTAAATGA TTCCGAGGTG-CCT ATTT AGGACACCTCGAAA TATATTTTAATTTAC TERM 3266 2959178 - 2959163 - f 80 -9 -3.95674 | AAAATTGCCAAATAA GGTCAC ATCT GTGACC CCCTTAACATAAAGT TERM 3267 2960194 - 2960179 - g 74 -2.6 -5.09173 | gap 1, overlap 2960170 2960167 2960190 GAACATGCCAAAAAA TGGCCAT GAC AT-GCCA AAAGGCATGGATATG YPA_2658 2959457 - 2960263 + | cytochrome o ubiquinol oxidase subunit II TERM 3268 2961331 - 2961354 + G 71 -6 -4.32804 | TTGCCACGATGATCA TTTCCATCCC AACA GGGGTGAAAA TTTTCAATTGGTTGT YPA_2659 2960268 - 2962259 + | cytochrome O ubiquinol oxidase subunit I TERM 3269 2962312 - 2962272 - g 77 -12 -3.17714 | gap 2, overlap 2962278 2962282 TGAAACTCTGACTAA CCACAACGT-A-GCCCATGC AGA GCATGGGCATCACGATGCGG GAGCGACGAAAGTAT TERM 3270 2962306 - 2962278 - g 70 -9 -3.54029 | gap 2, overlap 2962272 2962282 TCTGACTAACCACAA CGT-A-GCCCATGC AGA GCATGGGCATCACG ATGCGGGAGCGACGA TERM 3271 2962300 - 2962282 - g 81 -14.6 -2.63614 | overlap 2962278 2962272 ACTAACCACAACGTA GCCCATGC AGA GCATGGGC ATCACGATGCGGGAG TERM 3272 2962550 - 2962537 - g 71 -6.7 -4.15854 | AAAGGGAGTGTAAAA CAGGT CAAT ACCTG GTTGGGCTTCACCTT YPA_2660 2962249 - 2962863 + | cytochrome o ubiquinol oxidase subunit III YPA_2661 2962863 - 2963195 + | cytochrome o ubiquinol oxidase subunit IV YPA_2662 2963209 - 2964096 + | protoheme IX farnesyltransferase TERM 3273 2964165 - 2964127 - f 100 -11 -4.48299 | opp_overlap 2964131, overlap 2964131 TGAGAGTGAAATAAA TCAAGTGGCTGGCAGGAA TCG CTCTTGCCAGCCACTTTG TATTTGTTCCCTGTT TERM 3274 2964131 - 2964161 + F 100 -17.7 -4.46072 | opp_overlap 2964127 2964131 AGTGAAATAAATCAA GTGGCTGGCAGGA ATCGC TCTTGCCAGCCAC TTTGTATTTGTTCCC TERM 3275 2964161 - 2964131 - f 100 -16.2 -3.76486 | opp_overlap 2964131, overlap 2964127 AGTGAAATAAATCAA GTGGCTGGCAGGAA TCG CTCTTGCCAGCCAC TTTGTATTTGTTCCC YPA_2663 2964580 - 2965944 + | putative transporter TERM 3276 2966003 - 2965974 - T 71 -8.5 -3.44622 | opp_overlap 2965974 TAGGGCCAGAATTAA GGGGCAAAGACAT GAAA AAGCCGTTGCCCC TTTAGTCGTTATACC YPA_2664 2966559 - 2966068 - | nucleotide-binding protein YPA_2665 2966791 - 2967702 + | 2-dehydropantoate 2-reductase TERM 3277 2968235 - 2968206 - gT 76 -7.9 -4.19974 | gap 1, opp_overlap 2968207, overlap 2968207 AAAAGGCGGAAGAAA TTGCCTGGCAGCTA GTG TTGCCGCCAGG-AA TTTATAATTATCGGG TERM 3278 2968235 - 2968207 - gT 72 -9.5 -3.109 | opp_overlap 2968207, overlap 2968206 AAAGGCGGAAGAAAT TGCCTGGCAGCTA GTG TTGCCGCCAGGAA TTTATAATTATCGGG TERM 3279 2968207 - 2968235 + GT 73 -7.3 -4.1021 | opp_overlap 2968206 2968207 AAAGGCGGAAGAAAT TGCCTGGCAGCTA GTG TTGCCGCCAGGAA TTTATAATTATCGGG YPA_2666 2967665 - 2968255 + | hypothetical protein YPA_2667 2969774 - 2968323 - | thiamine biosynthesis protein ThiI YPA_2668 2970042 - 2969872 - | hypothetical protein TERM 3280 2970170 - 2970152 - g 72 -8.2 -3.96148 | CCGCTTCACCAGAAA TCAAAGCC GCC AGCTTTGA AACATCACTCAGTGA YPA_2669 2970085 - 2970378 + | exodeoxyribonuclease VII small subunit TERM 3281 2970739 - 2970766 + G 78 -6.2 -4.90471 | gap 1 GGCCCACGCTATTTT GGCCGGTG-ATGC ACT GCAAACGCTGGCC TTTTCTATTTTGGCT YPA_2670 2970383 - 2971303 + | geranyltranstransferase YPA_2671 2971459 - 2973318 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3282 2973423 - 2973391 - T 100 -11.3 -4.13973 | opp_overlap 2973398, overlap 2973395 2973397 2973398 AGATATCAGAAACAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3283 2973419 - 2973395 - T 100 -9.9 -4.63952 | opp_overlap 2973398, overlap 2973391 2973397 2973398 ATCAGAAACAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3284 2973417 - 2973397 - T 100 -12.5 -3.91443 | opp_overlap 2973398, overlap 2973395 2973391 2973398 CAGAAACAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3285 2973398 - 2973416 + T 100 -16 -4.8048 | opp_overlap 2973397 2973395 2973391 2973398 AGAAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3286 2973416 - 2973398 - T 100 -16 -2.93239 | opp_overlap 2973398, overlap 2973397 2973395 2973391 AGAAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2672 2973955 - 2973497 - | transposase for the IS1541 insertion element TERM 3287 2974086 - 2974068 - R 100 -16 -3.07307 | opp_overlap 2974068 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3288 2974068 - 2974086 + r 100 -16 -4.37092 | opp_overlap 2974068 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3289 2974130 - 2974101 - R 95 -12.3 -3.28712 | opp_overlap 2974105, overlap 2974105 GTTTTCTGGGCACAA TAAAGGCATAGCC CGTG GGTTATGCCTTTA CGTGATAGTCTCTCT TERM 3290 2974126 - 2974105 - R 86 -8.7 -4.30719 | opp_overlap 2974105, overlap 2974101 TCTGGGCACAATAAA GGCATAGCC CGTG GGTTATGCC TTTACGTGATAGTCT TERM 3291 2974105 - 2974126 + r 84 -10.9 -3.6959 | opp_overlap 2974105 2974101 TCTGGGCACAATAAA GGCATAGCC CGTG GGTTATGCC TTTACGTGATAGTCT YPA_2673 2974654 - 2974169 - | phosphatidylglycerophosphatase A YPA_2674 2975636 - 2974647 - | thiamine monophosphate kinase TERM 3292 2975665 - 2975699 + r 100 -21.8 -2.84059 | opp_overlap 2975667 2975671, overlap 2975667 2975671 AAATGTTAACTGATA TATAAATTAAGGCCGG ATA CCGGCCTTAATTTATA TCGTTAATGTATATC TERM 3293 2975667 - 2975697 + r 100 -20 -2.96235 | opp_overlap 2975667 2975671, overlap 2975665 2975671 ATGTTAACTGATATA TAAATTAAGGCCGG ATA CCGGCCTTAATTTA TATCGTTAATGTATA TERM 3294 2975697 - 2975667 - R 100 -20 -2.95091 | opp_overlap 2975667 2975665 2975671, overlap 2975671 ATGTTAACTGATATA TAAATTAAGGCCGG ATA CCGGCCTTAATTTA TATCGTTAATGTATA TERM 3295 2975693 - 2975671 - R 100 -16.4 -4.15061 | opp_overlap 2975671 2975667 2975665, overlap 2975667 TAACTGATATATAAA TTAAGGCCGG ATA CCGGCCTTAA TTTATATCGTTAATG TERM 3296 2975671 - 2975693 + r 100 -16.4 -4.14541 | opp_overlap 2975667 2975671, overlap 2975667 2975665 TAACTGATATATAAA TTAAGGCCGG ATA CCGGCCTTAA TTTATATCGTTAATG nusB 2976293 - 2975877 - | transcription antitermination protein NusB TERM 3297 2976131 - 2976091 - G 70 -3.3 -4.88918 | opp_overlap 2976103, overlap 2976093 TGACGGGAAAGAAAA GGTGCCATTAATGCATC CAGAGAT GCTGCATTAACCGCAAC CCCTGACAGCAATTC TERM 3298 2976203 - 2976219 + g 71 -5.1 -4.57569 | opp_overlap 2976206, overlap 2976206 ACAGGAACTGTAATT CAACATC AGC GATGTCG TTTTTAGACAACTGC ribH 2976784 - 2976314 - | riboflavin synthase subunit beta ribD 2978029 - 2976920 - | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YPA_2678 2978628 - 2978179 - | transcriptional regulator NrdR YPA_2679 2979301 - 2978699 - | hypothetical protein TERM 3299 2978836 - 2978850 + g 82 -8.6 -4.54608 | CTTTGATGCTCGCAT CCAGTA ATT TACTGG TTTCTGTTTCTTTTA TERM 3300 2979256 - 2979238 - G 79 -11.8 -3.26807 | opp_overlap 2979236, overlap 2979236 ATGATTTAAAAACCA CAGACTGA TTT TCAGTCTG ACTCTCTATCGTTCG YPA_2680 2980029 - 2979334 - | hypothetical protein TERM 3301 2980253 - 2980221 - R 100 -11.3 -4.43501 | opp_overlap 2980228, overlap 2980225 2980227 2980228 AATTTACTGATAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3302 2980249 - 2980225 - R 100 -9.9 -4.7878 | opp_overlap 2980228, overlap 2980221 2980227 2980228 TACTGATAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3303 2980247 - 2980227 - R 100 -12.5 -3.99938 | opp_overlap 2980228, overlap 2980225 2980221 2980228 CTGATAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3304 2980246 - 2980228 - R 100 -16 -2.98878 | opp_overlap 2980228, overlap 2980227 2980225 2980221 TGATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3305 2980228 - 2980246 + r 100 -16 -4.8048 | opp_overlap 2980228 2980227 2980225 2980221 TGATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2681 2980785 - 2980327 - | transposase for the IS1541 insertion element TERM 3306 2980898 - 2980916 + r 100 -16 -4.36914 | opp_overlap 2980898 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3307 2980916 - 2980898 - R 100 -16 -3.07307 | opp_overlap 2980898 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3308 2980960 - 2980936 - R 100 -9.9 -4.55295 | opp_overlap 2980939, overlap 2980938 2980939 CTGGGCACAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3309 2980958 - 2980938 - R 100 -12.5 -3.88703 | opp_overlap 2980939, overlap 2980936 2980939 GGGCACAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3310 2980939 - 2980957 + r 100 -16 -4.8048 | opp_overlap 2980939 2980938 2980936 GGCACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3311 2980957 - 2980939 - R 100 -16 -2.92499 | opp_overlap 2980939, overlap 2980938 2980936 GGCACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2682 2981496 - 2981038 - | transposase for the IS1541 insertion element TERM 3312 2981627 - 2981609 - R 100 -16 -3.07307 | opp_overlap 2981609 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3313 2981609 - 2981627 + r 100 -16 -4.36914 | opp_overlap 2981609 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3314 2981643 - 2981671 + r 71 -8.9 -3.24924 | opp_overlap 2981646, overlap 2981641 2981645 2981646 TTTTCTGGGCACAAA AAACCCTGAAACT AAC AGTTTCAGGGCTA TCTTATACATCGAAC TERM 3315 2981645 - 2981669 + r 84 -11.5 -3.18945 | opp_overlap 2981646, overlap 2981643 2981641 2981646 TTCTGGGCACAAAAA ACCCTGAAACT AAC AGTTTCAGGGC TATCTTATACATCGA TERM 3316 2981668 - 2981646 - R 100 -15 -5.24129 | opp_overlap 2981645 2981643 2981641 2981646 TCTGGGCACAAAAAA CCCTGAAACT AAC AGTTTCAGGG CTATCTTATACATCG TERM 3317 2981646 - 2981668 + r 100 -15 -2.51045 | opp_overlap 2981646, overlap 2981645 2981643 2981641 TCTGGGCACAAAAAA CCCTGAAACT AAC AGTTTCAGGG CTATCTTATACATCG secF 2982671 - 2981703 - | preprotein translocase subunit SecF secD 2984529 - 2982682 - | preprotein translocase subunit SecD TERM 3318 2984390 - 2984420 + g 77 -10.5 -3.53091 | gap 1 TGGACCAGCGTTGTC TCACTGGCG-GCGA TTCC TCGCGCACCAGTGA TTTGAACAGCCGGAT yajC 2984892 - 2984557 - | preprotein translocase subunit YajC TERM 3319 2984818 - 2984836 + g 78 -9.6 -3.90112 | opp_overlap 2984808 TACTACCAGCATGAT CAGCATGG AGG TCATGCTG TTTCCTTGAGCCGGA tgt 2986128 - 2985004 - | queuine tRNA-ribosyltransferase TERM 3320 2985640 - 2985613 - G 73 -9.1 -3.74872 | gap 1, opp_overlap 2985607 ATTCAGCTCATCAAA GCGCTG-GCGGC TACGG GCAGCCCAGCGC AGTGACATTTCCATC TERM 3321 2986096 - 2986075 - G 70 -9.3 -3.57462 | opp_overlap 2986089 2986091, overlap 2986045 CACGCCACGCTCAAA CACCAGCCG ACCA CGGCGGGCG CGCCCATCCGTTTTT TERM 3322 2986091 - 2986106 + g 80 -2.4 -5.38249 | opp_overlap 2986075, overlap 2986089 ACCAGCCGACCACGG CGGGCG CGCC CATCCG TTTTTTGTAATTCGT TERM 3323 2986137 - 2986163 + r 81 -7.4 -4.68593 | ACTTCACATAACCTC CAGCATCAGA GAAACAG TCTGATGTTG TTTTTGCCTGATCAC queA 2987306 - 2986221 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase YPA_2688 2987467 - 2988075 + | hypothetical protein TERM 3324 2988252 - 2988242 - f 73 -5.4 -4.67641 | ACTGCAAAACTAAAA TCGT TTA ACGA TAGGCAAAAACTATC YPA_2689 2988374 - 2988976 + | putative alkyl hydroperoxide reductase subunit c TERM 3325 2989040 - 2989017 - f 93 -12.5 -3.14132 | opp_overlap 2989017 CTCGGGGGCTATCAA GCCAGTCAG TTCACT CTGACTGGC TTTTTTTCCCCTAGA TERM 3326 2989017 - 2989040 + F 100 -12.5 -5.44119 | opp_overlap 2989017 CTCGGGGGCTATCAA GCCAGTCAG TTCACT CTGACTGGC TTTTTTTCCCCTAGA YPA_2690 2989365 - 2989619 + | hypothetical protein YPA_2691 2989616 - 2991130 + | gamma-glutamyltranspeptidase TERM 3327 2991269 - 2991298 + T 95 -12.3 -3.35813 | opp_overlap 2991269 2991268 2991271 AGTATCTGAAAATAT TATCCCCTATCGA ACTA TTGATGGGGGATA TTCATTAGAGTGGAG YPA_2692 2992018 - 2991338 - | short chain dehydrogenase TERM 3328 2992136 - 2992101 - R 87 -4.7 -5.52986 | opp_overlap 2992101 2992105, overlap 2992105 ACTGGAGCAAAAAAA CAGCTCAGTTATCAC TGAATT GTTATCCCTGAGCTG CTCTAGTGAGTTATC YPA_2693 2994002 - 2992173 - | maltodextrin glucosidase TERM 3329 2993658 - 2993642 - G 80 -2.9 -5.26918 | overlap 2993643 AGATCTGATAAAAAA CTTGGTC CGC GACCCAA TCAGGCCCGCTATCG TERM 3330 2994521 - 2994495 - R 100 -6.5 -5.85244 | opp_overlap 2994495 AATTAAAAGAAAAAA GCCGGGACAGA TGAAC TGTACCCCGGC TTTGTATCGATTATC YPA_2694 2995954 - 2994563 - | putative proline-specific permease TERM 3331 2995155 - 2995138 - G 77 -11.3 -3.36492 | opp_overlap 2995131, overlap 2995142 GCTGGAAGGTCAGAA CGAACGG ACTA CCGTTCG TGCCCACTTGATTCC TERM 3332 2996005 - 2995985 - R 100 -11.1 -4.72272 | overlap 2995963 TTTTTTCAGCAAAAA GCCACGGAT ATT AACCGTGGC TAAAAATACTCTATT YPA_2695 2997349 - 2996030 - | branched-chain amino acid transport system II carrier protein YPA_2696 2998887 - 2997823 - | phosphate binding protein TERM 3333 2998065 - 2998083 + g 79 -11 -3.54307 | CAAAATCTTGCCCAC TCGCTGCC AAC GGCAGTGA TTTAACACCACTGTT phoR 3000225 - 2998909 - | phosphate regulon sensor protein TERM 3334 2998989 - 2998979 - G 78 -2.4 -5.29885 | AAGGTAAAAATAAAA CGGG TAC CCAG ACCAATTTCACTCAT TERM 3335 2999897 - 2999880 - G 76 -11.3 -3.25304 | overlap 2999870 2999892 2999893 AAATATTACCATCAA CCGTGGT GATA ACCACGG CATCAGGCAGTGACT TERM 3336 3000199 - 3000182 - G 71 -5.5 -4.45696 | GGCAAACAAAAAAGA GCCAGCT CTAA AGCCAGC GTTTTCCATGATAAG YPA_2698 3000939 - 3000250 - | phosphate regulon transcriptional regulatory protein YPA_2699 3001207 - 3002451 + | exonuclease subunit SbcD TERM 3337 3002823 - 3002807 - g 71 -6.5 -4.13767 | GGCCTTATGCGAAAA CGGCAAA ATC TTGGCCG ATAAGGTCCGCGATA TERM 3338 3003674 - 3003645 - g 82 -6.5 -4.81083 | overlap 3003638 3003664 CTGAATGAGCAAAAA CTATTGCAGAC CCATCAAC GCCTGCAACAG CTAGCAGACTATGCC YPA_2700 3002448 - 3005690 + | hypothetical protein TERM 3339 3005750 - 3005768 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2701 3005772 - 3006794 + | transposase for insertion sequence IS100 TERM 3340 3006875 - 3006861 - g 77 -11.4 -3.3506 | overlap 3006852 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2702 3006794 - 3007573 + | transposase/IS protein YPA_2703 3007737 - 3008096 + | putative ATP-dependent dsDNA exonuclease YPA_2704 3009612 - 3008698 - | fructokinase TERM 3341 3009679 - 3009661 - H 88 -9.6 -4.25104 | TTCTCGCGATCAAAA TACCCTGC TAG GCAGGATA ACTGTGATCTGGATA TERM 3342 3009930 - 3009906 - H 84 -11.3 -3.14132 | CCCTGCGTTGATTAA CTCGCGCGCTC CAG GCGCGCCCGAG CCAAGGATAACACTA rdgC 3009945 - 3010856 + | recombination associated protein TERM 3343 3011068 - 3011038 - T 86 -11.9 -2.91086 | overlap 3011031 3011033 AAAGGATAGATGATA TGTCGCCCCCTCT GGCAT AGAGAGGGTGACA GACTCGCTAACTCAA YPA_2706 3011379 - 3011092 - | hypothetical protein aroL 3012393 - 3011869 - | shikimate kinase II TERM 3344 3012468 - 3012448 - R 75 -3.2 -5.21709 | opp_overlap 3012465 TTCGACATCAAAAAA CCGACC GTTATTATT GGCCGG TTGAACAGGTTTACT YPA_2708 3013197 - 3012640 - | putative methyltransferase YPA_2709 3014565 - 3013927 - | hypothetical protein TERM 3345 3014410 - 3014424 + gr 83 -2.8 -5.39721 | CAGCCCTTGTTGTAT CTCAAT ATT AGTGAG TTTTTTATCTGCTGC YPA_2710 3014716 - 3014513 - | hypothetical protein YPA_2711 3014963 - 3014694 - | hypothetical protein YPA_2712 3015895 - 3015146 - | hypothetical protein TERM 3346 3015734 - 3015700 - G 71 -5.8 -4.29325 | overlap 3015702 CACCAAGAGCCAAAA CATTTTCGTTTTCTAC ACT GCCGAAATCGAAAATA AACTGATTAGTCTCA TERM 3347 3016148 - 3016121 - R 100 -13.6 -5.78622 | gap 1, opp_overlap 3016121 3016145 TGATTTGAAAAAAAA GCGACAT-TGGCA AAT TGCCACATGTCGC TTTACTAGCGATTTT TERM 3348 3016121 - 3016148 + r 100 -13.6 -3.75863 | gap 1, opp_overlap 3016121, overlap 3016145 TGATTTGAAAAAAAA GCGACAT-TGGCA AAT TGCCACATGTCGC TTTACTAGCGATTTT TERM 3349 3016145 - 3016159 + r 78 -5.7 -4.7497 | opp_overlap 3016121, overlap 3016121 GCAAATTGCCACATG TCGCT TTACT AGCGA TTTTTAATCAATCAG proA 3017491 - 3016232 - | gamma-glutamyl phosphate reductase TERM 3350 3016413 - 3016396 - G 74 -7.7 -4.1891 | TCGCGTTAACATAAA CTGCCGA TGAA TCGACAG CGCGGACAAAATACT YPA_2714 3018604 - 3017501 - | gamma-glutamyl kinase TERM 3351 3018725 - 3018695 - R 78 -9.1 -3.83205 | AGGCTTGATACGAAA TCACCCCCTTTAT TGTGC AGAAAGGGGGTAA TGGGGACAGTTTATG YPA_2715 3019182 - 3018781 - | DNA-binding transcriptional regulator Crl frsA 3020489 - 3019242 - | fermentation/respiration switch protein TERM 3352 3020604 - 3020575 - R 100 -9.3 -4.69326 | overlap 3020580 ATACTGAAGAGAAAA TGAAACGTCCGGC AGGC ACCGGACGCTTAA AGAACAGTAAATTAT TERM 3353 3020599 - 3020580 - R 100 -11.4 -4.32571 | overlap 3020575 GAAGAGAAAATGAAA CGTCCGGC AGGC ACCGGACG CTTAAAGAACAGTAA YPA_2717 3021074 - 3020616 - | xanthine-guanine phosphoribosyltransferase TERM 3354 3021907 - 3021897 - H 77 -4.6 -4.9218 | TAGTGATTATAAAAA CCCA TTC CGGG CGGGAGGGATGCGCA TERM 3355 3022018 - 3022004 - g 78 -5.8 -4.88258 | overlap 3022014 AAAAGGATAATAAAA TGAAAT TAC ATTTCA ATGCACAACTACATC YPA_2718 3022003 - 3023607 + | putative carbohydrate-binding protein TERM 3356 3023621 - 3023643 + T 100 -13.6 -5.26875 | opp_overlap 3023602 AATCGTCTCTATCAG CGGGTATTAT TCT ATAATACCCG TTTTTTAATTCAGAA YPA_2719 3024978 - 3024067 - | LysR family transcriptional regulator TERM 3357 3024136 - 3024146 + g 78 -4 -5.13016 | opp_overlap 3024130 3024136, overlap 3024130 ATTATCACATAAATA GTAA GCG TTAC TTTTTACTTTTAATT TERM 3358 3025289 - 3025279 - H 70 -2.6 -4.9725 | opp_overlap 3025279 ATGCCGACACAAAAA TAAA GGA TTTA ATTCTTATTTTTCCG TERM 3359 3026170 - 3026156 - H 82 -2.1 -5.72053 | gap 1 GAATTAAATAAAAAA TG-GGC TACA GCCTCA AGTAAAAACCTCATT TERM 3360 3028191 - 3028170 - g 70 -2.2 -5.00616 | overlap 3028183 GGTTTGTTCAAAAAA CCCTATCC TAACAT GGACATGG TGTCGATTGGGCCAA YPA_2720 3026853 - 3028313 + | aminoacyl-histidine dipeptidase YPA_2721 3029485 - 3028427 - | DNA polymerase IV TERM 3361 3030587 - 3030573 - g 74 -4.2 -4.8543 | overlap 3030575 3030577 GAAGTTGTAGAAAAA TACACC TTG GGTGAA GGGCGTTCTAGCGCA YPA_2722 3029841 - 3030788 + | hypothetical protein TERM 3362 3030864 - 3030904 + T 100 -19.1 -3.32844 | opp_overlap 3030865 3030869, overlap 3030865 3030869 GACAATAATTGAGCA ACAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTGC TTGTCAGATAAAAAA TERM 3363 3030865 - 3030903 + T 100 -22.6 -2.59564 | opp_overlap 3030865 3030869, overlap 3030864 3030869 ACAATAATTGAGCAA CAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTG CTTGTCAGATAAAAA TERM 3364 3030903 - 3030865 - T 100 -22.6 -3.2557 | opp_overlap 3030865 3030864 3030869, overlap 3030869 ACAATAATTGAGCAA CAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTG CTTGTCAGATAAAAA TERM 3365 3030869 - 3030899 + T 100 -17.6 -4.00124 | opp_overlap 3030865 3030869, overlap 3030865 3030864 TAATTGAGCAACAAA GCCCCCGAACAATG ATG CGTCGTTCGGGGGC TTTGCTTGTCAGATA TERM 3366 3030899 - 3030869 - T 100 -17.6 -4.26871 | opp_overlap 3030869 3030865 3030864, overlap 3030865 TAATTGAGCAACAAA GCCCCCGAACAATG ATG CGTCGTTCGGGGGC TTTGCTTGTCAGATA YPA_2723 3031259 - 3031032 - | hypothetical protein YPA_2724 3032351 - 3031272 - | thiamine biosynthesis lipoprotein TERM 3367 3031634 - 3031652 + g 74 -4.4 -4.79683 | overlap 3031636 CCGCGACTGGCTTTT CAATGGCG ATA CGCCAAGG TTTATTTTCTCCATT YPA_2725 3033558 - 3032335 - | Na(+)-translocating NADH-quinone reductase subunit F YPA_2726 3034170 - 3033574 - | Na(+)-translocating NADH-quinone reductase subunit E YPA_2727 3034806 - 3034177 - | Na(+)-translocating NADH-quinone reductase subunit D TERM 3368 3034669 - 3034648 - G 79 -8.7 -4.27796 | overlap 3034649 GAAGAAACTCGAAAA CGCAGTCAC CAGC GTGACTGCC AGAGTCATCACTAAT TERM 3369 3034668 - 3034649 - G 77 -12.2 -3.15593 | overlap 3034648 AAGAAACTCGAAAAC GCAGTCAC CAGC GTGACTGC CAGAGTCATCACTAA YPA_2728 3035599 - 3034799 - | Na(+)-translocating NADH-quinone reductase subunit C YPA_2729 3036830 - 3035589 - | Na(+)-translocating NADH-quinone reductase subunit B YPA_2730 3038216 - 3036834 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 3370 3038401 - 3038417 + G 74 -6.5 -4.28049 | opp_overlap 3038396 CATTACACAAGCAGG TCACCAG CTG CGGGTGA TTTTAGCATTTTCCG YPA_2731 3038279 - 3038458 + | hypothetical protein YPA_2732 3038673 - 3039413 + | hypothetical protein YPA_2733 3040151 - 3039378 - | hypothetical protein TERM 3371 3039424 - 3039445 + g 75 -8.7 -3.91084 | opp_overlap 3039424 AATAAAGCAAATTCA CCTGGTGCA ATTT TGTGCCAGG TTTCATTACCGGTCA gmhA 3040935 - 3040354 - | phosphoheptose isomerase fadE 3041175 - 3043622 + | acyl-CoA dehydrogenase TERM 3372 3043662 - 3043687 + T 100 -9 -4.82128 | opp_overlap 3043658 3043662 TATCGAAATAATCAA CCAAGCCTCC CATTAA GGAGGCTTAG TTTTATGTTTAATAA TERM 3373 3043687 - 3043662 - T 93 -11.9 -3.62723 | opp_overlap 3043662, overlap 3043658 TATCGAAATAATCAA CCAAGCCTCCC ATTA AGGAGGCTTAG TTTTATGTTTAATAA YPA_2736 3044540 - 3043794 - | hypothetical protein TERM 3374 3044292 - 3044276 - G 72 -10.1 -3.44284 | overlap 3044274 GCCCCATCAACAACA GGCGCAA ACC CTGCGCC CCGAGTAATCGCTGT TERM 3375 3044472 - 3044453 - G 71 -7.9 -4.08216 | TGATGTGCTGTAAAA TGCCGAT CGGGAT ATCGGCA ACCAAGCGATGAAGT YPA_2737 3046395 - 3044542 - | putative accessory processing protein TERM 3376 3046000 - 3046015 + g 70 -9 -3.62478 | TCGCTCGAATCGCAA TGGGTG CGAG CACCCA TTTCCGGCTTCATTA YPA_2738 3052282 - 3046550 - | putative adhesin TERM 3377 3050635 - 3050646 + g 76 -7.2 -4.33274 | overlap 3050634 3050643 ATGTCAGCGTCGCAT CGGC TCCC GCCG TTTTAGTGATATCGG YPA_2739 3054113 - 3052323 - | putative surface-exposed protein TERM 3378 3054334 - 3054298 - R 82 -2.4 -5.66989 | gap 1, overlap 3054315 TAAACACTAAAAAAA CCGTAAACTTA-GAC TAATTGCC GTCACAGGTTTACGG CAAACAGCAATTTGA TERM 3379 3054831 - 3054846 + r 73 -9 -3.41359 | overlap 3054829 TAGCTCGTAGGCTGA GCCTCA GGGA TGAGGC TATTAATTTTGAGGC TERM 3380 3054933 - 3054923 - R 100 -8.2 -4.8622 | overlap 3054924 GGCGTCAAGTAAAAA GGGG GAT CCCC GACGTCATTGGCGTT YPA_2740 3056302 - 3055019 - | allantoate amidohydrolase TERM 3381 3055806 - 3055824 + g 71 -11 -2.84504 | overlap 3055804 3055802 ATCGCTTGCGCGACA CTGATGCC ATC GGCATCGG TCGTATTTAACCACT YPA_2741 3056760 - 3056302 - | aminotransferase, class V TERM 3382 3056808 - 3056826 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2742 3056830 - 3057852 + | transposase for insertion sequence IS100 TERM 3383 3057933 - 3057919 - g 77 -11.4 -3.3506 | overlap 3057910 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2743 3057852 - 3058631 + | transposase/IS protein YPA_2744 3059605 - 3058682 - | hypothetical protein YPA_2745 3060383 - 3059637 - | putative amino acid ABC transporter, ATP-binding protein YPA_2746 3061017 - 3060364 - | putative amino acid ABC transporter, permease protein YPA_2747 3061682 - 3061014 - | putative amino acid ABC transporter, permease protein YPA_2748 3062483 - 3061695 - | putative amino acid ABC transporter, periplasmic protein YPA_2749 3063644 - 3062811 - | rpiR family transcriptional regulatory protein TERM 3384 3062862 - 3062879 + g 73 -9.1 -3.80877 | overlap 3062860 AATTTGATGTATCCG CTGGCGG CCTT CTGCCAG TATTTTATGCAGTAA YPA_2750 3063985 - 3063827 - | hypothetical protein YPA_2751 3063954 - 3064157 + | hypothetical protein YPA_2752 3064154 - 3065551 + | amidase YPA_2753 3065467 - 3066015 + | hypothetical protein TERM 3385 3066150 - 3066134 - f 78 -9.3 -3.59979 | GGTTGTCATTCCAAA GGGGGCC TTT GGCCCTC GCTCGAAAATGCCTC TERM 3386 3066754 - 3066783 + G 86 -15.1 -2.91695 | overlap 3066711 3066726 3066752 CCATTTATTGGGTTG CCAGTGCCTTGAT GTTT ATCATGGCACTGG TCCTTTGGCGCTGCC YPA_2754 3066243 - 3067442 + | sugar transporter YPA_2755 3067602 - 3068375 + | putative amino acid transporter YPA_2756 3068372 - 3068713 + | hypothetical protein YPA_2757 3068885 - 3069397 + | transcriptional repressor MprA TERM 3387 3069852 - 3069832 - g 84 -2.6 -5.55769 | gap 1 CCGCAGAATAAAAAA CAGCA-ACG TAAA CGTGTACTG CTGTTGCTGACGGCC YPA_2758 3069781 - 3070953 + | multidrug resistance protein A YPA_2759 3070992 - 3072527 + | multidrug resistance protein B TERM 3388 3072615 - 3072559 - T 100 -13.8 -3.40775 | opp_overlap 3072560 3072569 3072574 3072613, overlap 3072560 3072574 ATTTTTAGCCAAATA GCGGTCAACAAAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCGT TCTAAAACGTCTCTC TERM 3389 3072614 - 3072560 - T 100 -17.3 -2.64144 | opp_overlap 3072560 3072569 3072574 3072613, overlap 3072559 3072574 TTTTTAGCCAAATAG CGGTCAACAAAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCG TTCTAAAACGTCTCT TERM 3390 3072560 - 3072614 + T 100 -17.3 -3.3095 | opp_overlap 3072560 3072559 3072574, overlap 3072569 3072574 3072613 TTTTTAGCCAAATAG CGGTCAACAAAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCG TTCTAAAACGTCTCT TERM 3391 3072569 - 3072605 + T 100 -13.8 -4.6902 | opp_overlap 3072560 3072559 3072574, overlap 3072560 3072574 AAATAGCGGTCAACA AAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTA TTTTTACCGTTCTAA TERM 3392 3072600 - 3072574 - T 100 -13.7 -5.4505 | opp_overlap 3072569 3072560 3072574, overlap 3072560 3072559 GCGGTCAACAAAAAA GGGGGCCCTGA ACTCA TCAGCGCCCCC TTTTATTTTTACCGT TERM 3393 3072574 - 3072600 + T 100 -13.7 -5.27023 | opp_overlap 3072574 3072560 3072559, overlap 3072569 3072560 GCGGTCAACAAAAAA GGGGGCCCTGA ACTCA TCAGCGCCCCC TTTTATTTTTACCGT YPA_2760 3073816 - 3072650 - | putative methyltransferase TERM 3394 3073844 - 3073832 - H 77 -10.5 -3.14132 | opp_overlap 3073828 TGTCTTCTCCACCAA CGCGC AGG GCGCG AAGATTACCTGATGT YPA_2761 3074068 - 3074505 + | thioredoxin 2 TERM 3395 3074630 - 3074657 + F 75 -8.6 -3.86897 | gap 1, opp_overlap 3074601 3074600, overlap 3074625 3074631 TTTTCTGTCGGGGCG TGG-GCCATTCTA TAT TAGAATGGCGCTA TTTCTCAGGAGTCCG TERM 3396 3074631 - 3074655 + F 89 -11.5 -3.5241 | opp_overlap 3074601 3074600, overlap 3074625 3074630 TTTCTGTCGGGGCGT GGGCCATTCTA TAT TAGAATGGCGC TATTTCTCAGGAGTC YPA_2762 3074675 - 3075424 + | hypothetical protein YPA_2763 3075467 - 3078109 + | putative acetyltransferase pssA 3078285 - 3079640 + | phosphatidylserine synthase TERM 3397 3079672 - 3079656 - f 70 -3.6 -4.78848 | opp_overlap 3079656, overlap 3079649 GTCTTAAAGATAAAA CCCGGT GAATT AGCGGG TTTTCATCTCCCACT YPA_2765 3079702 - 3080043 + | hypothetical protein TERM 3398 3080215 - 3080195 - T 72 -6.1 -4.34402 | TCGCGCACAGCAAAA CCCCACG TTTTTGG CATGGGG TCATCATTACAACGC TERM 3399 3080261 - 3080281 + T 71 -8.9 -3.35798 | opp_overlap 3080261 CGCGCACAGCAAAAA CCCCACGCT TTG GGCATGGGG TTATCAATACAACGT TERM 3400 3080281 - 3080261 - T 100 -10.4 -4.8048 | opp_overlap 3080261 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TTATCAATACAACGT TERM 3401 3080347 - 3080327 - T 100 -10.4 -4.8048 | opp_overlap 3080324 CGCGCACAGCAAAAA CCCCACGC TTTTG GCATGGGG TCATCATTACAACGC TERM 3402 3080386 - 3080420 + T 95 -9.2 -4.50627 | opp_overlap 3080393 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 3403 3080413 - 3080393 - T 100 -10.4 -4.8048 | opp_overlap 3080386 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 3404 3080651 - 3080641 - T 74 -6.8 -4.27316 | opp_overlap 3080641 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 3405 3081763 - 3081774 + T 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 3406 3081810 - 3081836 + T 70 -9.4 -2.75844 | opp_overlap 3081786 3081788, overlap 3081809 3081812 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 3407 3082270 - 3082288 + T 82 -10.3 -3.57798 | overlap 3082263 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 3408 3086130 - 3086113 - T 100 -12.7 -5.80727 | AAAAACAACAAAAAA GGGGCGA TTTC TCGCCCC TTAGAGGATCAGCTA YPA_2766 3088719 - 3086146 - | protein disaggregation chaperone TERM 3409 3087413 - 3087426 + g 80 -2.3 -5.41143 | AACCGTTTTTTACTG GCGTC ATCT GACTC TTTTTTTAGGGCCTG YPA_2767 3089580 - 3088849 - | hypothetical protein TERM 3410 3089143 - 3089168 + g 71 -10.4 -3.06696 | opp_overlap 3089143 3089140 AGCCATAAGAGAGGA CGGTGCCGCA TTGAAT TGCGCCACCG TGTGTTCCAGAACAC TERM 3411 3089544 - 3089531 - G 70 -9.5 -3.29144 | CGAGTGGTGCTACAA GCCCG GACG CGGGC AGGCATCGGCCAATC rluD 3090559 - 3089582 - | 23S rRNA pseudouridine synthase D TERM 3412 3090594 - 3090604 + H 75 -8.2 -3.8766 | AACGTTGGGTTTTGA CGGC GAT GCCG TTTAATATAATGTGC YPA_2769 3090695 - 3091426 + | outer membrane protein assembly complex subunit YfiO TERM 3413 3091477 - 3091448 - f 74 -4.9 -4.77757 | opp_overlap 3091454, overlap 3091450 3091454 CCCGAAAAATGAAAA CACCAACGGCAGC TCAG GCTGCCGTTTTCA ATTTAGGTTTTCAAC TERM 3414 3091475 - 3091450 - f 72 -7.5 -3.99386 | opp_overlap 3091454, overlap 3091448 3091454 CGAAAAATGAAAACA CCAACGGCAGC TCAG GCTGCCGTTTT CAATTTAGGTTTTCA TERM 3415 3091471 - 3091454 - f 100 -12.7 -3.58476 | opp_overlap 3091454, overlap 3091450 3091448 AAATGAAAACACCAA CGGCAGC TCAG GCTGCCG TTTTCAATTTAGGTT TERM 3416 3091454 - 3091471 + F 100 -12.7 -4.37198 | opp_overlap 3091454 3091450 3091448 AAATGAAAACACCAA CGGCAGC TCAG GCTGCCG TTTTCAATTTAGGTT YPA_2770 3091781 - 3092143 + | putative sigma 54 modulation protein TERM 3417 3092172 - 3092187 + T 100 -11.8 -4.87291 | CTAATTTCGGTGTAA CGCGCC TTCG GGCGCG TTTTTAATTGACATC TERM 3418 3092396 - 3092372 - T 93 -9.9 -4.33153 | opp_overlap 3092375, overlap 3092374 3092375 GCGAAGACGAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3419 3092394 - 3092374 - T 100 -12.5 -3.76167 | opp_overlap 3092375, overlap 3092372 3092375 GAAGACGAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3420 3092375 - 3092393 + T 100 -16 -4.8048 | opp_overlap 3092375 3092374 3092372 AAGACGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3421 3092393 - 3092375 - T 100 -16 -2.84616 | opp_overlap 3092375, overlap 3092374 3092372 AAGACGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2771 3092932 - 3092474 - | transposase for the IS1541 insertion element TERM 3422 3093063 - 3093045 - R 100 -16 -3.07307 | opp_overlap 3093045 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3423 3093045 - 3093063 + r 100 -16 -4.36914 | opp_overlap 3093045 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3424 3093107 - 3093083 - R 100 -9.9 -4.55295 | opp_overlap 3093086, overlap 3093085 3093086 CTGGGCACAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3425 3093105 - 3093085 - R 100 -12.5 -3.88703 | opp_overlap 3093086, overlap 3093083 3093086 GGGCACAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3426 3093104 - 3093086 - R 100 -16 -2.92499 | opp_overlap 3093086, overlap 3093085 3093083 GGCACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3427 3093086 - 3093104 + r 100 -16 -4.8048 | opp_overlap 3093085 3093083 3093086 GGCACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2772 3093643 - 3093185 - | transposase for the IS1541 insertion element TERM 3428 3093756 - 3093774 + H 100 -16 -4.36914 | opp_overlap 3093756 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3429 3093774 - 3093756 - H 100 -16 -3.07307 | opp_overlap 3093756 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3430 3093813 - 3093796 - H 100 -12.7 -4.51812 | opp_overlap 3093796 GGGCACAACAAGAAA GCCTCCC AAGC GGGAGGC TTTTTTTATGTATAT TERM 3431 3093796 - 3093813 + H 100 -12.7 -5.77988 | opp_overlap 3093796 GGGCACAACAAGAAA GCCTCCC AAGC GGGAGGC TTTTTTTATGTATAT YPA_2773 3093926 - 3094756 + | hypothetical protein TERM 3432 3094748 - 3094766 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2774 3094770 - 3095792 + | transposase for insertion sequence IS100 TERM 3433 3095873 - 3095859 - g 77 -11.4 -3.3506 | overlap 3095850 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2775 3095792 - 3096571 + | transposase/IS protein YPA_2776 3096756 - 3097526 + | siroheme synthase YPA_2777 3097537 - 3098445 + | sulfate adenylyltransferase subunit 2 cysN 3098457 - 3099974 + | sulfate adenylyltransferase subunit 1 YPA_2779 3099976 - 3100617 + | adenylylsulfate kinase YPA_2780 3100808 - 3101125 + | hypothetical protein ftsB 3101439 - 3101759 + | cell division protein FtsB ispD 3101793 - 3102488 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispF 3102627 - 3103115 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 3434 3103374 - 3103360 - g 86 -11.4 -4.07885 | TATGCGGGGTTAAAA GACCGC CAT GCGGTC ACCGAACAGTGGTTT TERM 3435 3104091 - 3104106 + G 77 -10.4 -3.54129 | TGAGCTGAGTTTCTG GCTCCC TGCG GGGAGC TTTGCGACCAGTGTG truD 3103126 - 3104175 + | tRNA pseudouridine synthase D TERM 3436 3104559 - 3104574 + G 71 -6.8 -4.21631 | ATTACGATACGGCGG CGGCAG TGAC TTGCCG TTTATTACGTGCGTT surE 3104153 - 3104917 + | stationary phase survival protein SurE TERM 3437 3104988 - 3104974 - g 76 -11.4 -3.22298 | opp_overlap 3104959, overlap 3104959 GGTATTCACGATGAA CGCCTG TTA CAGGCG ATCGAAGCGGTACCG TERM 3438 3105488 - 3105503 + G 70 -3.2 -4.76075 | gap 1, overlap 3105486 3105485 3105488 AATACCATATTGAGA CGG-TGG AAG CCGTCCG TTTTGTTCCTCTGGT pcm 3104911 - 3105537 + | protein-L-isoaspartate O-methyltransferase TERM 3439 3106193 - 3106218 + G 76 -11.9 -3.01712 | opp_overlap 3106179 ATGTTGCCATCATCT GGTGCGGTTGT CGCT ACAACAGCACC TGTTACCGCACCAAG YPA_2787 3105641 - 3106642 + | lipoprotein NlpD YPA_2788 3106697 - 3107695 + | RNA polymerase sigma factor RpoS TERM 3440 3107798 - 3107825 + T 100 -7.1 -5.66684 | opp_overlap 3107798 GATGAAACACAACAA CGGTGAACA GATAGATAAA TGTTCACCG TTTTTTTATGCCTTG TERM 3441 3107825 - 3107798 - T 72 -7.1 -4.05193 | opp_overlap 3107798 GATGAAACACAACAA CGGTGAACA GATAGATAAA TGTTCACCG TTTTTTTATGCCTTG YPA_2789 3110611 - 3108047 - | DNA mismatch repair protein TERM 3442 3109575 - 3109593 + g 75 -8.8 -3.91897 | opp_overlap 3109573 ATACGTTCTAAATCG CCCACTTG TCT CAAGGGGG TTTGTAACTCGGCGG TERM 3443 3111167 - 3111149 - g 71 -6.6 -4.18351 | overlap 3111153 AAAGCAAATCAGAAA TGAAGGGC ACT GCCCCGCA TCTGAGCTGAAAGAT TERM 3444 3111163 - 3111153 - g 70 -8.2 -3.67022 | overlap 3111149 CAAATCAGAAATGAA GGGC ACT GCCC CGCATCTGAGCTGAA YPA_2790 3111108 - 3111242 + | hypothetical protein YPA_2791 3111860 - 3111405 - | ribose-5-phosphate isomerase B TERM 3445 3111993 - 3112017 + H 80 -10.1 -3.69364 | opp_overlap 3111988 3111998, overlap 3111997 TAAAACCAAGTCTTT CAAAAGATCAC CAT GTGATCATTTG TTATATATATTCAAT TERM 3446 3111997 - 3112013 + H 70 -5.1 -4.45484 | opp_overlap 3111988 3111998, overlap 3111993 ACCAAGTCTTTCAAA AGATCAC CAT GTGATCA TTTGTTATATATATT TERM 3447 3112012 - 3111998 - H 79 -8.6 -4.09739 | opp_overlap 3111997 3111993, overlap 3111988 CCAAGTCTTTCAAAA GATCAC CAT GTGATC ATTTGTTATATATAT YPA_2792 3112343 - 3113458 + | putative Zinc-binding dehydrogenase YPA_2793 3113522 - 3114292 + | short chain dehydrogenase TERM 3448 3114411 - 3114452 + G 91 -5.2 -5.52384 | CGATCCGGATCAGGT TGTGGAAGAGGCGATAAA AGGCTA TTTAGCGGCTTATCCACA TTTTTTTGCTAAAAC TERM 3449 3114591 - 3114636 + G 71 -5.3 -4.58685 | overlap 3114619 3114620 TAAAAATATGCTGGA TGCCGTAGCGGTTGGTGAG ATCTTCTC CTCCCCGGCGGCTGGGGCA TTTTTAGAAGCGTTT YPA_2794 3114379 - 3115380 + | putative dihydroxyacetone kinase YPA_2795 3115387 - 3116061 + | hypothetical protein YPA_2796 3117153 - 3116182 - | transcriptional regulatory protein TERM 3450 3116482 - 3116500 + g 73 -6 -4.4773 | AGGAGTGAACCAGCC CAGCTCTA CCA TATAGCTG TTTTCGTTCATATCA TERM 3451 3117345 - 3117359 + r 75 -2.2 -5.33131 | overlap 3117326 AATCAGTAACTGGTC TTTAAT TTT GTTAAA TTTGTTTTTTTATTA TERM 3452 3117594 - 3117570 - R 72 -6.3 -4.2558 | overlap 3117571 3117585 GATCCTTCATCAAAA TGCCAGGAGAG TAA CCCTACTGGCG GCAATGCTAATAGGC TERM 3453 3117593 - 3117571 - R 74 -9.8 -3.15027 | overlap 3117570 3117585 ATCCTTCATCAAAAT GCCAGGAGAG TAA CCCTACTGGC GGCAATGCTAATAGG YPA_2797 3118997 - 3117708 - | arsenical pump membrane protein TERM 3454 3118990 - 3118979 - G 70 -2.2 -4.9218 | TAGTCAGGATAAAAA TAGC ACCA GCCA ACAACATAACGCCTC YPA_2798 3119423 - 3119082 - | DNA-binding transcriptional repressor ArsR TERM 3455 3120165 - 3120186 + r 86 -3.1 -5.69068 | opp_overlap 3120169, overlap 3120169 AAGCTGTAAAGTCAT TAATTTCAT CTCA ATGAATTTA TTTTTTATCTTTTTA TERM 3456 3120169 - 3120182 + r 77 -3.9 -5.19003 | opp_overlap 3120169, overlap 3120165 TGTAAAGTCATTAAT TTCAT CTCA ATGAA TTTATTTTTTATCTT YPA_2799 3120350 - 3120144 - | hypothetical protein YPA_2800 3121535 - 3120771 - | extracellular solute-binding protein YPA_2801 3122985 - 3121606 - | putative cytochrome C peroxidase YPA_2802 3123527 - 3123222 - | hypothetical protein YPA_2803 3123646 - 3125229 + | hypothetical protein YPA_2804 3125275 - 3125742 + | putative exogenous ferric siderophore receptor; Iha adhesin TERM 3457 3125975 - 3125953 - f 70 -7.7 -3.62255 | opp_overlap 3125952, overlap 3125949 TTCAAGAAGAACTAA CCGGCCTTT TATCC AAAGGCGGG CTGAATTGGAATTCA YPA_2805 3126175 - 3127362 + | hypothetical protein TERM 3458 3127549 - 3127517 - f 100 -13.6 -3.08073 | opp_overlap 3127526 3127528, overlap 3127527 AGCAGCGCTAATACA TCTGCAGAATGGAG GATAA CTTCATTCTGCAGA CAACCCCCGATGACG TERM 3459 3127625 - 3127601 - g 76 -7.8 -4.4261 | gap 1, opp_overlap 3127603, overlap 3127602 3127603 GGCCGAAGAGTAAAA CGTCCGCGCCA GAGA TGGCGCGG-CT TGAATGGCATTCAGG TERM 3460 3127624 - 3127602 - g 76 -11.3 -3.25084 | gap 1, opp_overlap 3127603, overlap 3127601 3127603 GCCGAAGAGTAAAAC GTCCGCGCCA GAGA TGGCGCGG-C TTGAATGGCATTCAG TERM 3461 3127603 - 3127624 + G 74 -11.5 -3.07994 | opp_overlap 3127602 3127601 3127603 CCGAAGAGTAAAACG TCCGCGCCA GAGA TGGCGCGGC TTGAATGGCATTCAG TERM 3462 3127624 - 3127603 - g 70 -11.5 -2.54568 | opp_overlap 3127603, overlap 3127602 3127601 CCGAAGAGTAAAACG TCCGCGCCA GAGA TGGCGCGGC TTGAATGGCATTCAG YPA_2806 3127525 - 3127710 + | acetyltransferase YPA_2807 3128505 - 3127720 - | methionine aminopeptidase YPA_2808 3128753 - 3128502 - | hypothetical protein TERM 3463 3128867 - 3128836 - R 100 -10.2 -4.36595 | opp_overlap 3128836, overlap 3128864 CACTGAAACGGAAAA GGCCTGAGCTCC GTGAATGA AGAACTCAGGCC TTGATAGCCGCTTAA YPA_2809 3130579 - 3128936 - | fumarate hydratase, class I TERM 3464 3130212 - 3130228 + g 74 -3.6 -5.03715 | overlap 3130214 GCATCGTTACCCCCA GTCCAG ACCCG CTGGCC TTTTTTGCCCATGAT TERM 3465 3130822 - 3130845 + r 72 -9.6 -3.09823 | opp_overlap 3130818, overlap 3130816 GGCTTAAGCGACGGT TCCACCCTCT TTAT AAAGGGTGGA TCTCATTTTCCGCAC YPA_2810 3132473 - 3130977 - | putative L-xylulose kinase TERM 3466 3131723 - 3131707 - G 70 -8.7 -3.60151 | TCGTGTAAACCAGAA GTCAGTG CCG CACCGAC CACATCAAACATGCC YPA_2811 3133365 - 3132484 - | putative L-xylulose 5-phosphate 3-epimerase TERM 3467 3133318 - 3133332 + g 74 -4.2 -4.87807 | TTCGACCCAACTGGT GCCC GCAGGTA GGGC TTTTTCGTATATTCC TERM 3468 3133561 - 3133543 - R 72 -7.4 -4.0641 | opp_overlap 3133526 GTTTATCTACATAAA CAGTTAGC TGC GCTCACTG GAATCCCAATCACTT YPA_2812 3134608 - 3133571 - | putative sugar ABC transporter, permease protein YPA_2813 3135610 - 3134621 - | putative sugar ABC transporter, permease protein YPA_2814 3137117 - 3135603 - | putative sugar ABC transporter, ATP-binding protein TERM 3469 3136720 - 3136699 - G 71 -5.8 -4.3586 | GGATCGAGACTAAAA GCCAGTTC ATGCAA GATCTGGC AGGCTTTTTGTTTGA TERM 3470 3137194 - 3137162 - R 100 -11.3 -4.07687 | opp_overlap 3137169, overlap 3137166 3137168 3137169 ACCGCGGGTCGAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3471 3137190 - 3137166 - R 100 -9.9 -4.64861 | opp_overlap 3137169, overlap 3137162 3137168 3137169 CGGGTCGAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3472 3137188 - 3137168 - R 100 -12.5 -3.93868 | opp_overlap 3137169, overlap 3137166 3137162 3137169 GGTCGAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3473 3137169 - 3137187 + r 100 -16 -4.8048 | opp_overlap 3137169 3137168 3137166 3137162 GTCGAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3474 3137187 - 3137169 - R 100 -16 -2.95598 | opp_overlap 3137169, overlap 3137168 3137166 3137162 GTCGAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2815 3137726 - 3137268 - | transposase for the IS1541 insertion element TERM 3475 3137839 - 3137857 + r 100 -16 -4.37092 | opp_overlap 3137839 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3476 3137857 - 3137839 - R 100 -16 -3.07307 | opp_overlap 3137839 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT YPA_2816 3138984 - 3137977 - | putative sugar ABC transporter, periplasmic protein YPA_2817 3139951 - 3139142 - | DeoR family transcriptional regulator TERM 3477 3139791 - 3139813 + g 100 -4.9 -5.75342 | AGTGCGACAGCGCCG CCAAAACTG CGGAT CAGTTTTTG TTTTTTTTGCAACAC TERM 3478 3140605 - 3140583 - H 83 -11.4 -2.95116 | opp_overlap 3140583, overlap 3140580 3140585 CTATTAGTTAAATGA CATCATTCGA ATA CCGAATGATG TTTTTCATTATCGCC TERM 3479 3140583 - 3140605 + H 100 -10.7 -4.93365 | opp_overlap 3140580 3140583 3140585 CTATTAGTTAAATGA CATCATTCG AATAC CGAATGATG TTTTTCATTATCGCC araD 3140654 - 3141349 + | L-ribulose-5-phosphate 4-epimerase YPA_2819 3141812 - 3144262 + | anaerobic dimethyl sulfoxide reductase chain A YPA_2820 3144274 - 3144891 + | anaerobic dimethyl sulfoxide reductase chain B YPA_2821 3144893 - 3145753 + | anaerobic dimethyl sulfoxide reductase chain C TERM 3480 3145778 - 3145804 + F 100 -15.3 -3.85092 | GGCGGTGACACTTTG GCTATTCTGGG GAGCG CCCAGAATAGC TTTGCTCTGCCTCAT TERM 3481 3145992 - 3146004 + G 84 -2.6 -5.55769 | GGACTAACGGGGCGA GTGC TAGGT GCGC TTTTTTATTGTGAGC YPA_2822 3145899 - 3146609 + | twin-argninine leader-binding protein DmsD TERM 3482 3146832 - 3146813 - T 100 -13.6 -4.09685 | TTGCATTCTTTAAAA TGTCCCGC AAAC GCGGGACA AAGAGAAACGGAACA YPA_2823 3147396 - 3146866 - | cytochrome b561 TERM 3483 3147424 - 3147465 + r 76 -11 -2.56571 | gap 1, overlap 3147420 3147432 AATATACCCGTCGCC CTTCACGATGCAGG-GGGT TAGCT GCCTACCTGCATCTTGAAG TCACTTGGGTATATA YPA_2824 3147927 - 3147544 - | putative cytochrome B562 TERM 3484 3147961 - 3148007 + r 82 -6.9 -4.77122 | gap 2, opp_overlap 3147969 3147973, overlap 3147964 3147965 3147969 3147973 TTATGATTTTCTTCT CTTA-TAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTAGTTAG TTATTTTTTATATCA TERM 3485 3147964 - 3148003 + r 78 -8.8 -3.81144 | gap 1, opp_overlap 3147969 3147973, overlap 3147961 3147965 3147969 3147973 TGATTTTCTTCTCTT ATAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTAG TTAGTTATTTTTTAT TERM 3486 3147965 - 3148002 + r 89 -12.3 -2.86246 | gap 1, opp_overlap 3147969 3147973, overlap 3147964 3147961 3147969 3147973 GATTTTCTTCTCTTA TAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTA GTTAGTTATTTTTTA TERM 3487 3147998 - 3147969 - R 78 -8.7 -3.85698 | gap 1, opp_overlap 3147965 3147964 3147961 3147969 3147973, overlap 3147973 TTCTTCTCTTATAAA TAGAGGGG-GGA AGATAAA TCCTCCCCTCTA TTTAGTTAGTTATTT TERM 3488 3147969 - 3147998 + r 80 -8.7 -4.05045 | gap 1, opp_overlap 3147969 3147973, overlap 3147965 3147964 3147961 3147973 TTCTTCTCTTATAAA TAGAGGGG-GGA AGATAAA TCCTCCCCTCTA TTTAGTTAGTTATTT TERM 3489 3147996 - 3147973 - R 71 -8.8 -3.3353 | opp_overlap 3147969 3147965 3147964 3147961 3147973, overlap 3147969 TCTCTTATAAATAGA GGGGGGAAGA TAAA TCCTCCCCTC TATTTAGTTAGTTAT TERM 3490 3147973 - 3147996 + r 75 -8.8 -3.59634 | opp_overlap 3147973 3147969, overlap 3147969 3147965 3147964 3147961 TCTCTTATAAATAGA GGGGGGAAGA TAAA TCCTCCCCTC TATTTAGTTAGTTAT YPA_2825 3150217 - 3148004 - | catalase-peroxidase TERM 3491 3148715 - 3148726 + g 76 -4.4 -4.91109 | CTCTGCGGGATCGTT GACT GGCC AGTC TTTTTGTGGTGCCAG TERM 3492 3151451 - 3151440 - g 74 -7.2 -4.2679 | GAAGCCGCATTAAAA GCGG CGGG CCGC AATGATGTGGTGGTG TERM 3493 3151609 - 3151597 - g 79 -9.1 -4.15833 | ATCAGTATCTGAAAA CCGGT AAA ACCGG TCTGGAAGAGAAACA YPA_2826 3150753 - 3151694 + | putative sugar ABC transporter, periplasmic protein TERM 3494 3151751 - 3151772 + F 89 -11.5 -3.53761 | opp_overlap 3151754, overlap 3151752 3151754 3151766 3151767 CCGCTTTAGCCGTAA TGAGGGGCG ACAT CGCCCCTCC TTTCAGGAGGCATTA TERM 3495 3151752 - 3151771 + F 100 -15 -2.72043 | opp_overlap 3151754, overlap 3151751 3151754 3151766 3151767 CGCTTTAGCCGTAAT GAGGGGCG ACAT CGCCCCTC CTTTCAGGAGGCATT TERM 3496 3151769 - 3151754 - f 83 -11.8 -2.72344 | opp_overlap 3151752 3151751 3151754 3151766 3151767 CTTTAGCCGTAATGA GGGGCG ACAT CGCCCC TCCTTTCAGGAGGCA TERM 3497 3151754 - 3151769 + F 86 -11.8 -2.90496 | opp_overlap 3151754, overlap 3151752 3151751 3151766 3151767 CTTTAGCCGTAATGA GGGGCG ACAT CGCCCC TCCTTTCAGGAGGCA YPA_2827 3151787 - 3152404 + | putative lipoprotein TERM 3498 3153467 - 3153451 - g 91 -7.9 -5.09173 | opp_overlap 3153451 GAAGATCGTAAAAAA GCCGGGA TTT TCCCTGC TTCATCGGTCGCCTG YPA_2828 3152404 - 3153927 + | putative sugar ABC transporter, ATP-binding protein YPA_2829 3153924 - 3155069 + | putative sugar ABC transporter, permease protein TERM 3499 3155678 - 3155652 - g 72 -3.7 -4.89567 | gap 1, opp_overlap 3155673, overlap 3155647 3155653 3155654 CTGTAAAACACAAAA CGCCAGGCATTG AACT CAATACCGGG-G CTTTAGGGCACGGTT TERM 3500 3155876 - 3155864 - g 76 -4.8 -5.00267 | AACGACAAAAATAAA CTGC AACTG GCAG GGACCACTAAATCAA YPA_2830 3155315 - 3156145 + | transketolase subunit YPA_2831 3156138 - 3157082 + | transketolase subunit TERM 3501 3157396 - 3157356 - g 80 -10.5 -3.66178 | gap 2, opp_overlap 3157357, overlap 3157357 TTTGGGAACGGGAAA CCGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCGT CGTTCAGAGGCTTTC TERM 3502 3157357 - 3157395 + G 74 -11.8 -2.7186 | gap 2, opp_overlap 3157357 3157356 TTGGGAACGGGAAAC CGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCG TCGTTCAGAGGCTTT TERM 3503 3157395 - 3157357 - g 82 -14 -2.79492 | gap 2, opp_overlap 3157357, overlap 3157356 TTGGGAACGGGAAAC CGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCG TCGTTCAGAGGCTTT TERM 3504 3158545 - 3158556 + G 71 -7.2 -4.07885 | CTGGCAAACGGCCAT CGCG CGTG CGCG TTTTCAGCCGAAATA YPA_2832 3157085 - 3158572 + | glycerol kinase TERM 3505 3158780 - 3158766 - g 74 -8.6 -4.08767 | GGGAGGTGTGGAAAA TTGGCA TGA TGCCAA GGTGTGCGCTGAATT YPA_2833 3158593 - 3160017 + | hypothetical protein YPA_2834 3160222 - 3159971 - | hypothetical protein TERM 3506 3160197 - 3160212 + g 71 -10.4 -3.0395 | opp_overlap 3160192 AAGAGTAAAGTGTCC GCCCCA TGGC TGGGGC TGTTAACCAATATGT YPA_2835 3161183 - 3160239 - | putative transcriptional regulatory protein YPA_2836 3162771 - 3161431 - | hypothetical protein TERM 3507 3162316 - 3162297 - G 70 -9.3 -3.59233 | overlap 3162293 TAACCATTAAAGTAA TCAGCCC CAGCGC GGGCTGA AACATAAGCACCACC TERM 3508 3162873 - 3162889 + H 100 -10.9 -4.41548 | opp_overlap 3162886 ATCATGATTTTTTAT CCCCTTT TAA AAAGGGG TTTTCTCCCCTCTCA TERM 3509 3162899 - 3162886 - H 70 -5.2 -4.56775 | opp_overlap 3162873 ATCCCCTTTTAAAAA GGGG TTTTCT CCCC TCTCACCGCTATTCG TERM 3510 3163155 - 3163145 - g 71 -6.8 -4.27465 | CATAAGTTAAAAGAA CACG GTG CGTG GGTGACCTGTGCAGA YPA_2837 3163088 - 3163576 + | competence damage-inducible protein A TERM 3511 3164647 - 3164629 - g 78 -3.8 -5.10933 | opp_overlap 3164630, overlap 3164631 CTATTTAAAAGAAAA CCCAGC CATTGCT GCTGAG TTAGATAAAAAACTG recA 3163691 - 3164761 + | recombinase A TERM 3512 3164820 - 3164789 - f 100 -16 -3.73953 | opp_overlap 3164789 3164793, overlap 3164793 ACCAGTTGGAGTAAA CAAACAGACCGTCA CTTG TGGCGGTCTGTTTG TTTGAGTAAATAACA TERM 3513 3164789 - 3164820 + F 100 -18.2 -3.6682 | opp_overlap 3164789 3164793, overlap 3164793 ACCAGTTGGAGTAAA CAAACAGACCGTCA CTTG TGGCGGTCTGTTTG TTTGAGTAAATAACA TERM 3514 3164816 - 3164793 - f 100 -11 -4.49556 | opp_overlap 3164789 3164793, overlap 3164789 GTTGGAGTAAACAAA CAGACCGTCA CTTG TGGCGGTCTG TTTGTTTGAGTAAAT TERM 3515 3164793 - 3164816 + F 100 -13.2 -4.46514 | opp_overlap 3164793 3164789, overlap 3164789 GTTGGAGTAAACAAA CAGACCGTCA CTTG TGGCGGTCTG TTTGTTTGAGTAAAT recX 3164899 - 3165462 + | recombination regulator RecX TERM 3516 3167532 - 3167519 - g 78 -2.3 -5.27335 | opp_overlap 3167520, overlap 3167520 GCGGCGAAAGAAAAA GGTGC AATG GCACT GTTCGGCGAGAAGTA TERM 3517 3167695 - 3167710 + G 86 -8.2 -4.67635 | opp_overlap 3167695, overlap 3167705 CACCATATTAAGGAA CCTCGC TATA GCGGGG TTTTCTGCTTTTGGC YPA_2840 3165602 - 3167818 + | alanyl-tRNA synthetase TERM 3518 3167810 - 3167795 - f 73 -9 -3.52102 | overlap 3167809 AGCGTAGCGAGACAA CGTTGC TTTA GCAACG GCCCGTAGGGCGAGG TERM 3519 3167867 - 3167882 + F 91 -8.2 -4.58466 | opp_overlap 3167867, overlap 3167877 CACCATATTAAGGAA CCTCGC TATA GCGGGG TTTTCTGCTTCTGGC TERM 3520 3167982 - 3167967 - f 73 -9 -3.52102 | overlap 3167981 AGCGTAGCGAGACAA CGTTGC TTTA GCAACG GCCCGTAGGGCGAGG TERM 3521 3168039 - 3168054 + F 91 -8.2 -4.67635 | opp_overlap 3168039, overlap 3168049 CACCATATTAAGGAA CCTCGC TATA GCGGGG TTTTCTGCTTTTGGC YPA_2841 3168279 - 3168845 + | fructose-1-phosphatase YPA_2842 3168842 - 3169270 + | hypothetical protein YPA_2843 3169314 - 3170912 + | glutamate--cysteine ligase TERM 3522 3170939 - 3170922 - f 100 -11.3 -5.55001 | CAATAAAAAAGAAAA GGCCACA TCAC TGTGGCC AAATTAACATCTCTA TERM 3523 3171006 - 3170978 - f 100 -10.4 -4.36554 | GATGATGATAACAAA TGCGCGTCTT TCACATATT AAGACGCGCA GGATGAGTAAAAGTT YPA_2844 3171080 - 3171595 + | S-ribosylhomocysteinase TERM 3524 3171629 - 3171646 + F 87 -4.8 -5.55769 | opp_overlap 3171629 3171624 3171631 AGGAGAATGATAAAA GGCGCT GATTAA AGCGTC TTTTTTATTGTGCCC TERM 3525 3171686 - 3171668 - f 100 -16 -4.37092 | opp_overlap 3171668 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3526 3171668 - 3171686 + F 100 -16 -3.07307 | opp_overlap 3171668 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_2845 3171799 - 3172257 + | transposase for the IS1541 insertion element TERM 3527 3172335 - 3172359 + T 100 -9.9 -4.44046 | opp_overlap 3172338, overlap 3172337 3172338 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTAAACTGAC TERM 3528 3172337 - 3172357 + T 100 -12.5 -3.82628 | opp_overlap 3172338, overlap 3172335 3172338 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTAAACTG TERM 3529 3172338 - 3172356 + T 100 -16 -2.88854 | opp_overlap 3172338, overlap 3172337 3172335 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTAAACT TERM 3530 3172356 - 3172338 - T 100 -16 -4.8048 | opp_overlap 3172338 3172337 3172335 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTAAACT YPA_2846 3173585 - 3172395 - | hypothetical protein YPA_2847 3174640 - 3173747 - | hypothetical protein TERM 3531 3175164 - 3175152 - g 70 -9.1 -3.62518 | opp_overlap 3175152 TCAAACAGTTGGAAA CCCTG GCT CAGGG TGTTGGCATTGATTT TERM 3532 3175774 - 3175764 - g 71 -6.8 -4.26076 | opp_overlap 3175766 GTATGTTGAGTAAAA TGCC AGG GGCA GGTCAGTTGCCAGAA YPA_2848 3174704 - 3176065 + | signal recognition particle protein TERM 3533 3176172 - 3176192 + F 70 -2.6 -5.00884 | opp_overlap 3176172 CAAAATGTGCGAACA GGAATCTA CGCTT TAGATTGC TTTTTTCGCCAAAAT TERM 3534 3176236 - 3176269 + F 100 -18.3 -4.67982 | GGGCTTTTTATATTG CAACTGGACCCCGTT CCCC GATGGGGTCCAGTTG TTTTATTAACTAAAG rpsP 3176293 - 3176541 + | 30S ribosomal protein S16 rimM 3176563 - 3177111 + | 16S rRNA-processing protein trmD 3177150 - 3177890 + | tRNA (guanine-N(1)-)-methyltransferase rplS 3177971 - 3178318 + | 50S ribosomal protein L19 TERM 3535 3178360 - 3178380 + F 100 -12.6 -5.24129 | opp_overlap 3178360 3178359 TTAATACTTATGAAG GGGCTAGC CATGT GCTAGCCC TTTTTTGTGCCCAGA TERM 3536 3178380 - 3178360 - f 86 -12.6 -2.52987 | opp_overlap 3178360, overlap 3178359 TTAATACTTATGAAG GGGCTAGC CATGT GCTAGCCC TTTTTTGTGCCCAGA TERM 3537 3178399 - 3178417 + F 100 -16 -3.07307 | opp_overlap 3178399 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3538 3178417 - 3178399 - f 100 -16 -4.36914 | opp_overlap 3178399 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_2853 3178530 - 3178988 + | transposase for the IS1541 insertion element TERM 3539 3179052 - 3179105 + T 100 -13.3 -5.63103 | gap 1, opp_overlap 3179046 3179069, overlap 3179055 3179069 GGTAACAGAGCCTTA TAG-GCGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTGTGCTCTA TTTTTTTAGTTGGCA TERM 3540 3179055 - 3179101 + T 100 -15.2 -3.80651 | opp_overlap 3179046 3179069, overlap 3179052 3179069 AACAGAGCCTTATAG GCGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTGTGC TCTATTTTTTTAGTT TERM 3541 3179069 - 3179087 + T 100 -16 -2.93101 | opp_overlap 3179069, overlap 3179055 3179052 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGCT TERM 3542 3179087 - 3179069 - T 100 -16 -4.8048 | opp_overlap 3179069 3179055 3179052 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGCT TERM 3543 3179273 - 3179251 - T 74 -10.6 -2.69545 | opp_overlap 3179253, overlap 3179250 3179253 GGCAGAGAGGAGAAT TAGCGCGGTA TCA CACCACGCTA TATAGACGAATGGTG YPA_2854 3180058 - 3179291 - | hypothetical protein YPA_2855 3180677 - 3180381 - | Dcu family, anaerobic C4-dicarboxylate transporter YPA_2856 3180976 - 3180665 - | Dcu family, anaerobic C4-dicarboxylate transporter YPA_2857 3181725 - 3181045 - | hypothetical protein YPA_2858 3182870 - 3182154 - | putative two-component response-regulatory protein YehT TERM 3544 3183190 - 3183177 - g 76 -5.3 -4.8143 | opp_overlap 3183169, overlap 3183169 3183181 GGAAGAACTGAAAAA TCAGT TTCC ACTGA GCGAAAATGATCAGT YPA_2859 3183097 - 3184173 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3545 3185158 - 3185172 + G 74 -10 -3.61517 | TACTACAAACGCTTT GGTGAG GCG CTCACC TTGTTAGAGCACCAT tyrA 3184186 - 3185307 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 3546 3185338 - 3185366 + T 100 -13.2 -5.69473 | GATAGATTTTTATAG GTCATCCCAGCA CAGCC TGCCGGGATGAC TTTTTTTATGGTGTG YPA_2861 3185867 - 3185412 - | prephenate dehydratase YPA_2862 3186662 - 3185883 - | transposase/IS protein TERM 3547 3186581 - 3186595 + g 77 -11.4 -3.3506 | overlap 3186594 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_2863 3187684 - 3186662 - | transposase for insertion sequence IS100 TERM 3548 3187706 - 3187688 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_2864 3188305 - 3187766 - | siroheme synthase TERM 3549 3188766 - 3188786 + H 93 -9.7 -4.37991 | opp_overlap 3188765 3188761 ATAAATTCAAGGCAT GGACGATCA TTA TGATCGCCC TTTTCCGTGTTTTTC TERM 3550 3188878 - 3188850 - H 100 -15.5 -3.1085 | CTAATTGACTCAATA CTACTTGTAGGTA TGA TACCCACAAGTAG CTCACCAGGGGGTTC YPA_2865 3188896 - 3189096 + | hypothetical protein TERM 3551 3189317 - 3189299 - g 71 -7.4 -4.11216 | opp_overlap 3189299 TTTTCATCTTCAAAA CCGTTGAA GGA TTCGACGG TTATTTCCCCGATAT TERM 3552 3189299 - 3189317 + G 78 -9.6 -3.91984 | opp_overlap 3189299 TTTTCATCTTCAAAA CCGTTGAA GGA TTCGACGG TTATTTCCCCGATAT YPA_2866 3189202 - 3189678 + | hypothetical protein TERM 3553 3189789 - 3189815 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3189778, overlap 3189784 3189790 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3554 3189790 - 3189816 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3189778, overlap 3189784 3189789 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3555 3189877 - 3189897 + T 100 -14.7 -3.14931 | GTTTGTCAGCAGTCT GGGGGCGCT CTT AGCGCCCTC TTAATGAGCCATAGA YPA_2867 3190205 - 3189921 - | phosphoadenylyl-sulfate reductase (thioredoxin) YPA_2868 3190647 - 3190180 - | hypothetical protein YPA_2869 3192374 - 3190644 - | sulfite reductase subunit beta cysJ 3194194 - 3192374 - | sulfite reductase subunit alpha TERM 3556 3193236 - 3193250 + g 71 -6.4 -4.431 | overlap 3193231 3193238 TGACTGAGCAGCGCC TGTGCC AGT GGCATA TTTTGTCCGTCAATA YPA_2871 3194587 - 3194946 + | putative 6-pyruvoyl tetrahydrobiopterin synthase family protein YPA_2872 3195851 - 3195180 - | hypothetical protein TERM 3557 3195799 - 3195782 - G 83 -5.5 -5.13741 | GCAAGCGAACAAAAA TCGCTGG AACG CCAGTGA AATAACCCTCGCCCT TERM 3558 3195915 - 3195936 + r 86 -10.2 -3.74077 | opp_overlap 3195915 CCGGCCTCCACCAAA CTGGCTAC GCTCGG GTAGCCAG TTTAACTGTATCAGA TERM 3559 3195936 - 3195915 - R 82 -10.2 -3.72576 | opp_overlap 3195915 CCGGCCTCCACCAAA CTGGCTAC GCTCGG GTAGCCAG TTTAACTGTATCAGA YPA_2873 3196524 - 3195955 - | superoxide dismutase (Cu-Zn) precursor TERM 3560 3196805 - 3196830 + r 74 -10.5 -2.67166 | opp_overlap 3196811, overlap 3196811 CAAAATCAACGCATA AAAAAACCCGC CGAA GCGGGTTTTTA ATTAATTAGTTAACT TERM 3561 3196811 - 3196824 + r 100 -9.5 -4.93547 | opp_overlap 3196811, overlap 3196805 CAACGCATAAAAAAA CCCGC CGAA GCGGG TTTTTAATTAATTAG TERM 3562 3196824 - 3196811 - R 100 -9.5 -5.66684 | opp_overlap 3196811 3196805 CAACGCATAAAAAAA CCCGC CGAA GCGGG TTTTTAATTAATTAG eno 3198191 - 3196896 - | phosphopyruvate hydratase TERM 3563 3198257 - 3198234 - R 95 -13.1 -3.02109 | AAAACTCCAGACAGA GGGGGCGAC ATCTCA GCCGCCCCC TACCACCAAATATTT YPA_2875 3199909 - 3198272 - | CTP synthetase mazG 3200963 - 3200121 - | nucleoside triphosphate pyrophosphohydrolase relA 3203399 - 3201165 - | GDP/GTP pyrophosphokinase TERM 3564 3201550 - 3201532 - G 71 -6 -4.36914 | CCTTGCGTGATAAAA CCGATAAT TTG ATCACCGG GGATCGGCTGGCAAC TERM 3565 3201975 - 3202001 + g 73 -5 -4.68994 | ACCGAGGTTAGGATT CAGCCAGTCACG GCT TGGGTTTGGCTG TTTTTGAGTGATAAT YPA_2878 3203534 - 3203409 - | hypothetical protein YPA_2879 3203732 - 3203550 - | hypothetical protein YPA_2880 3203843 - 3206626 + | hybrid sensory histidine kinase BarA TERM 3566 3206687 - 3206663 - T 100 -9.3 -5.15526 | ATAGAAAACCAAAAA GGGCACAGC GAGATAA ACTGTGCCC TTGAGCTAGATGGAA YPA_2881 3208246 - 3206801 - | serine endoprotease dgt 3209964 - 3208444 - | deoxyguanosinetriphosphate triphosphohydrolase YPA_2883 3210258 - 3210959 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YPA_2884 3210959 - 3211801 + | vitamin B12-transporter protein BtuF YPA_2885 3211801 - 3212415 + | hypothetical protein TERM 3567 3212454 - 3212477 + F 100 -8.8 -5.03715 | opp_overlap 3212454 TTTGAGCATAAAAAA CCGCTGCCAT TCTC ATGGTCGCGG TTTTTTAGCGATGCT TERM 3568 3212477 - 3212454 - f 89 -6.6 -5.31275 | opp_overlap 3212454 TTTGAGCATAAAAAA CCGCTGCCAT TCTC ATGGTCGCGG TTTTTTAGCGATGCT YPA_2886 3212544 - 3212645 + | hypothetical protein YPA_2887 3213044 - 3212700 - | iron-sulfur cluster insertion protein ErpA YPA_2888 3214616 - 3213180 - | chloride channel protein TERM 3569 3213633 - 3213618 - G 71 -7.6 -4.0498 | GATAAAAATGAACAA CAGCAT GCCG ATGCTG AAATTACCGGCTGCC TERM 3570 3213873 - 3213857 - G 70 -3 -4.78597 | CTAATAATAAATAAA GCCAAA GGGTG TTTAGC GGAGCATCACTGAGT TERM 3571 3214070 - 3214051 - G 71 -11.4 -2.83522 | opp_overlap 3214052, overlap 3214050 AGCGGGGCATTAAAT GCCGCAGA CAGC CCTGCGGC TGCACCGGTTGCTAA TERM 3572 3216025 - 3216058 + G 73 -9 -3.69934 | gap 2, opp_overlap 3216020 3216025 CGCTAAAGAGGAGAA CATCCCACTG--GTGG TTAA CCACGTCGGTGGGATG TTTGGCCTATTCTTT YPA_2889 3214997 - 3216277 + | glutamate-1-semialdehyde aminotransferase TERM 3573 3216530 - 3216547 + T 80 -9.9 -3.58343 | opp_overlap 3216524 3216523 GTCAATAACCTCTAA TCTCCTC TCCG GAGGAGA TTTCAGACTGCTGAC YPA_2890 3218648 - 3216651 - | iron-hydroxamate transporter permease subunit TERM 3574 3216697 - 3216685 - G 76 -3.3 -5.20222 | AGCAAATAAACAAAA TAGGG CGC CCCGA TAAATGTCGCTAATA YPA_2891 3219733 - 3218645 - | iron-hydroxamate transporter substrate-binding subunit TERM 3575 3219768 - 3219746 - R 75 -3.2 -5.12172 | overlap 3219747 3219750 CATTAATAAACAAAA CTTACCGGCG CAC CGCCAGCCGG GTGCGGTAAAATACC TERM 3576 3219764 - 3219750 - R 71 -9.2 -2.91398 | overlap 3219746 3219747 AATAAACAAAACTTA CCGGCG CAC CGCCAG CCGGGTGCGGTAAAA YPA_2892 3220527 - 3219733 - | iron-hydroxamate transporter ATP-binding subunit TERM 3577 3220826 - 3220793 - R 100 -8.7 -5.95539 | overlap 3220794 3220795 GCGCAAAGAAAAAAA TTGGCGGGCGCAGTC TGTA AACCACGCCCGCCGT CACATTTTATTGACC TERM 3578 3220825 - 3220794 - R 100 -12.2 -4.15696 | overlap 3220793 3220795 CGCAAAGAAAAAAAT TGGCGGGCGCAGTC TGTA AACCACGCCCGCCG TCACATTTTATTGAC TERM 3579 3220824 - 3220795 - R 100 -15.7 -3.07791 | overlap 3220794 3220793 GCAAAGAAAAAAATT GGCGGGCGCAGTC TGTA AACCACGCCCGCC GTCACATTTTATTGA mrcB 3223323 - 3220849 - | penicillin-binding protein 1b YPA_2894 3225993 - 3223432 - | ATP-dependent RNA helicase HrpB YPA_2895 3226034 - 3226609 + | putative 2'-5' RNA ligase TERM 3580 3227023 - 3227012 - g 91 -4.4 -5.53288 | opp_overlap 3227012 GGCAATTGAAAAAAA TCAG ATTG CTGA ATTATCTGGTTACAA YPA_2896 3226599 - 3227459 + | sugar fermentation stimulation protein A YPA_2897 3228198 - 3227515 - | hypothetical protein YPA_2898 3227629 - 3228084 + | DnaK transcriptional regulator DksA TERM 3581 3228154 - 3228112 - Gf 81 -10.7 -3.3676 | gap 1, opp_overlap 3228119, overlap 3228096 3228121 TGTAACACGGCATAA TGTGTAACACGGTGCCAGAG CCCT CTCCGGCACCGTGTTTGA-A CTGTTGGACCCCTTC TERM 3582 3228119 - 3228148 + gF 100 -17.9 -3.66803 | opp_overlap 3228096 3228112 3228121 CGGCATAATGTGTAA CACGGTGCCAGAG CCCT CTCCGGCACCGTG TTTGAACTGTTGGAC TERM 3583 3228146 - 3228121 - Gf 100 -16.9 -3.07233 | opp_overlap 3228119, overlap 3228112 GCATAATGTGTAACA CGGTGCCAGAG CCCT CTCCGGCACCG TGTTTGAACTGTTGG YPA_2899 3228364 - 3229329 + | glutamyl-Q tRNA(Asp) synthetase TERM 3584 3229461 - 3229440 - g 76 -5.7 -4.66537 | TCCGCGAAGACAAAA CGGTCCGTG ATGA CAAGGCCCG TAAAGATAAAGTGCC TERM 3585 3230329 - 3230291 - g 71 -6.7 -4.22948 | opp_overlap 3230293 AAAACCTATTTAAAA CTGTGCGAATACCAGCT TTTCC AGCCGCTATTCCCACTG ATTGCCCGTAATTTT pcnB 3229418 - 3230893 + | poly(A) polymerase I YPA_2901 3230901 - 3231380 + | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase panB 3231649 - 3232446 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 3586 3232682 - 3232696 + G 76 -2.8 -5.1356 | opp_overlap 3232671, overlap 3232684 AAACCCGCGCTGACG TGGTCG TGG TGACTA TTTTTGTTAATCCGC panC 3232534 - 3233388 + | pantoate--beta-alanine ligase TERM 3587 3233513 - 3233495 - f 78 -10.3 -3.2963 | AGCATTCCCCCATAA CGGGTTC GCTCG GAACCCG TGACCGCCGATGAGC YPA_2904 3233799 - 3234179 + | aspartate alpha-decarboxylase YPA_2905 3235407 - 3234328 - | hypothetical protein TERM 3588 3235318 - 3235330 + gT 100 -3.4 -6.04378 | CTTATTTAAATCGCC CAAC ATGTC GTTG TTTTTTTTGTGCTTT YPA_2906 3235642 - 3235304 - | hypothetical protein YPA_2907 3236619 - 3235849 - | putative ABC transporter, integral membrane protein YPA_2908 3237542 - 3236616 - | putative ABC transporter, ATP-binding protein TERM 3589 3238311 - 3238297 - g 79 -7.8 -4.57341 | opp_overlap 3238298 AAGCGCGGGCAAAAA GCCATG ATC CACGGC TGGGTATATGGTATT YPA_2909 3237565 - 3238440 + | putative carbonic anhydrase YPA_2910 3239139 - 3238594 - | hypoxanthine phosphoribosyltransferase TERM 3590 3239345 - 3239322 - R 100 -18.2 -5.24129 | CGGTTTTATAAAAAA CACCCCGGTC AACC GACCGGGGTG TGGCTCAGGCGCTGA YPA_2911 3240951 - 3239350 - | multicopper oxidase YPA_2912 3241268 - 3241615 + | hypothetical protein TERM 3591 3241830 - 3241820 - g 73 -3.2 -5.00616 | opp_overlap 3241824 3241825 TGTTCCGCGAAAAAA CCGA GCA TCAG GACCTGGTGATTTTT YPA_2913 3241732 - 3242622 + | spermidine synthase YPA_2914 3242700 - 3243494 + | S-adenosylmethionine decarboxylase TERM 3592 3243568 - 3243547 - f 89 -10.2 -3.94746 | TGATACGGAATTAAA GGTGATCG TTCAGG CGATCACC TAAAAACGGCTCGTC TERM 3593 3244476 - 3244492 + G 82 -7.9 -4.7373 | opp_overlap 3244472 TATATAGCCAAGGGC CAGGGGC GCT GCCACTG TTTTTAATCGCCTGC TERM 3594 3244690 - 3244667 - g 86 -5.2 -5.27477 | gap 1, opp_overlap 3244681 AGCGCAATGAAAAAA GGCAACG-CCA CAC TGGTCGCGGCC CTATCCTATTTCACG YPA_2915 3243932 - 3244840 + | hypothetical protein YPA_2916 3245310 - 3244951 - | hypothetical protein TERM 3595 3245536 - 3245556 + r 100 -13.9 -4.21194 | opp_overlap 3245518 3245536 TTTTTAAAATAGAAA CGGGAGGCC AAT GGCCCCCCG TTTTAGCTGATGCGA TERM 3596 3245556 - 3245536 - R 100 -16.1 -4.45168 | opp_overlap 3245536, overlap 3245518 TTTTTAAAATAGAAA CGGGAGGCC AAT GGCCCCCCG TTTTAGCTGATGCGA YPA_2917 3248206 - 3245609 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 3597 3247790 - 3247801 + g 71 -5.8 -4.28188 | TTTTGCATACGGATT GCCA GCTT TGGC TTTATCTTCTACGTC TERM 3598 3247807 - 3247823 + g 70 -9.5 -3.30124 | CAGCTTTGGCTTTAT CTTCTAC GTC GTAGAAG TTATCGAACATCAGC TERM 3599 3248084 - 3248099 + g 100 -6.8 -5.2189 | overlap 3248086 TAATAGGAATTCTTC TTCGCC CGCA GGCGGA TTTTTTAATGATTCA TERM 3600 3248702 - 3248670 - R 100 -11.3 -4.16943 | opp_overlap 3248677, overlap 3248674 3248676 3248677 GCGTATAGGCTAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3601 3248698 - 3248674 - R 100 -9.9 -4.67651 | opp_overlap 3248677, overlap 3248670 3248676 3248677 ATAGGCTAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3602 3248696 - 3248676 - R 100 -12.5 -3.94471 | opp_overlap 3248677, overlap 3248674 3248670 3248677 AGGCTAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3603 3248677 - 3248695 + r 100 -16 -4.8048 | opp_overlap 3248676 3248674 3248670 3248677 GGCTAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3604 3248695 - 3248677 - R 100 -16 -2.95598 | opp_overlap 3248677, overlap 3248676 3248674 3248670 GGCTAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2918 3249234 - 3248776 - | transposase for the IS1541 insertion element TERM 3605 3249365 - 3249347 - R 100 -16 -3.07307 | opp_overlap 3249347 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3606 3249347 - 3249365 + r 100 -16 -4.36914 | opp_overlap 3249347 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3607 3249386 - 3249405 + r 83 -9.2 -4.02396 | opp_overlap 3249386 TGGGCACAAAAAAAA CGGCCCCT ATGT AGGGACCG TTTCACTTTTATTTA TERM 3608 3249405 - 3249386 - R 100 -11.4 -5.93809 | opp_overlap 3249386 TGGGCACAAAAAAAA CGGCCCCT ATGT AGGGACCG TTTCACTTTTATTTA YPA_2919 3250901 - 3249477 - | dihydrolipoamide dehydrogenase TERM 3609 3249990 - 3249980 - G 76 -5.4 -4.81551 | opp_overlap 3249980 3249984 CACCGATAGCAAAAA TGTG TGG CACA TTGGTGCGCAGTTGC TERM 3610 3251202 - 3251178 - R 100 -17.2 -3.54743 | opp_overlap 3251174, overlap 3251163 3251181 3251193 GAGCAGTAACCACAA CAAGGCCGGC ACGAA GCCGGCCTTG GCGATTACATCACCA TERM 3611 3251199 - 3251181 - R 100 -13.1 -3.90241 | opp_overlap 3251174, overlap 3251178 3251163 3251193 CAGTAACCACAACAA GGCCGGC ACGAA GCCGGCC TTGGCGATTACATCA YPA_2920 3252736 - 3251207 - | dihydrolipoamide acetyltransferase TERM 3612 3252436 - 3252469 + g 100 -6.6 -5.25772 | gap 1 TTTTCGCCGCAGAGG CTGCCGGAGCC-GCT ACCTG AGCAGGCGCCGCCGG TTTTTCTTCTGCTTT aceE 3255413 - 3252750 - | pyruvate dehydrogenase subunit E1 pdhR 3256373 - 3255609 - | transcriptional regulator PdhR TERM 3613 3256334 - 3256311 - G 72 -9.6 -3.36273 | opp_overlap 3256315 CCCTTCCAAGATCAA GTATTCGAGC TGCT GCTCGATTAC ATCTGATAGTTTGGG TERM 3614 3256687 - 3256661 - H 71 -6.8 -4.08689 | overlap 3256657 CATTTAATAATTAAA TTTAAATTCATA TTT TTTGAATTTAAA TTCACACTTAACTAA TERM 3615 3257440 - 3257475 + G 70 -8.4 -3.72141 | gap 1, opp_overlap 3257452 CAGCTAGGCGAAATG GTGGTTGAA-GAACCTG TAG CCGGTTCCTTTAGCCAC TTTGCGTATAAATAT TERM 3616 3257714 - 3257734 + G 74 -4.7 -4.88405 | opp_overlap 3257714 3257717, overlap 3257699 3257709 TTGCCATCATTAAAG TGATCGCGA TTA TTGCGATGA TTTTATTTGGCGGTT YPA_2923 3257236 - 3258633 + | aromatic amino acid transport protein TERM 3617 3258708 - 3258669 - T 100 -14.4 -3.06312 | gap 1, opp_overlap 3258673 AAATCCGCTAGTTAA CCCTA-CCTAGGCCAGCAC TTA GTGCTGGCCTAGGCTATTG ACAAAGTACCTATGG TERM 3618 3258673 - 3258703 + T 100 -19.8 -3.02511 | opp_overlap 3258669 CCGCTAGTTAACCCT ACCTAGGCCAGCAC TTA GTGCTGGCCTAGGC TATTGACAAAGTACC YPA_2924 3259905 - 3259051 - | regulatory protein AmpE TERM 3619 3259738 - 3259716 - G 74 -3.5 -4.94058 | overlap 3259711 3259718 GGAAGCCAAACAAAA TATTTTGCA CTAAT TGCAAAATC CCCCAAACCAGCACC YPA_2925 3260746 - 3260195 - | N-acetyl-anhydromuranmyl-L-alanine amidase YPA_2926 3260859 - 3261767 + | quinolinate phosphoribosyltransferase TERM 3620 3261940 - 3261928 - f 79 -3.3 -5.30155 | overlap 3261929 GTATGAATTAAAAAA CGGCA CCC TGCCT CCAGTTTCTTAAACA YPA_2927 3261970 - 3262434 + | putative major pilin subunit YPA_2928 3262409 - 3263965 + | hypothetical protein YPA_2929 3263962 - 3265161 + | type IV pilin biogenesis protein YPA_2930 3266631 - 3265588 - | guanosine 5'-monophosphate oxidoreductase coaE 3266927 - 3267547 + | dephospho-CoA kinase YPA_2932 3267544 - 3268296 + | hypothetical protein TERM 3621 3268538 - 3268561 + G 76 -3.1 -5.06414 | AAAAGTCGTTATCTG GGGTGAACA AAGCCC TTTTCGCCC TTTTTGTTGCAAGCG YPA_2933 3268482 - 3268688 + | zinc-binding protein TERM 3622 3268800 - 3268776 - T 88 -9.9 -4.15222 | opp_overlap 3268779, overlap 3268778 3268779 ATGTGTTTTAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3623 3268798 - 3268778 - T 100 -12.5 -3.6761 | opp_overlap 3268779, overlap 3268776 3268779 GTGTTTTAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3624 3268797 - 3268779 - T 100 -16 -2.80244 | opp_overlap 3268779, overlap 3268778 3268776 TGTTTTAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3625 3268779 - 3268797 + T 100 -16 -4.8048 | opp_overlap 3268779 3268778 3268776 TGTTTTAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_2934 3269336 - 3268878 - | transposase for the IS1541 insertion element TERM 3626 3269425 - 3269443 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_2935 3269447 - 3270376 + | putative transposase TERM 3627 3270551 - 3270537 - g 77 -11.4 -3.3506 | overlap 3270528 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_2936 3270470 - 3271249 + | transposase/IS protein YPA_2937 3272409 - 3271300 - | hypothetical protein TERM 3628 3271414 - 3271439 + g 82 -11.3 -3.68619 | TAACTCTGAGCGGTT TTGCATCAGAG CATC CTCTGATGTAA TTTCAGTAAATTCCA YPA_2938 3274384 - 3272402 - | hypothetical protein TERM 3629 3272705 - 3272683 - G 83 -9.2 -4.4261 | opp_overlap 3272683, overlap 3272692 CTGGTAAGAGTAAAA TTGACGCAAC ATG ATTGCGCCAA TCTTGAAATTCCTGC TERM 3630 3274022 - 3273988 - G 70 -8 -3.70902 | gap 1 CTCGGTACAGGCAAA TCAGCAACAGTGTCA AGGAAG TGAC-CCGCTGCTGA CCATCAATTAAGTAG TERM 3631 3274449 - 3274425 - R 100 -8 -5.39755 | CACAATTAGAAAAAA TAAGGCATAT CAGAT ACATGCCTTA CAGAAACTTTTTTTA YPA_2939 3275725 - 3274466 - | integrase TERM 3632 3274704 - 3274683 - G 70 -8.7 -3.57128 | overlap 3274698 ATCAATGAACTACAA GCCATGGTT CTGA AACCGTGGC CACAGACTTCAACTT TERM 3633 3275907 - 3275892 - R 91 -6.8 -5.47218 | opp_overlap 3275892 TTTTAGGCAAAAAAA GCCACC TTGC GGTGAC TTAATTTTCATACTA YPA_2940 3277189 - 3276113 - | hypothetical protein TERM 3634 3276571 - 3276588 + g 73 -3.4 -5.0095 | gap 1 AATCAGATTCATCGA CCT-GCG ATAAC CGCCAGG TTTTATTGTCTTTTT YPA_2941 3278283 - 3277189 - | hypothetical protein YPA_2942 3278563 - 3280074 + | leucyl aminopeptidase TERM 3635 3280188 - 3280205 + F 95 -11.3 -3.80625 | TTGTTAGCAGTCTGA GGGCACA TTTT TGTGCCC TTTACGTTGTAGAGA YPA_2943 3280225 - 3280674 + | DNA polymerase III subunit chi valS 3280687 - 3283584 + | valyl-tRNA synthetase TERM 3636 3283611 - 3283649 + F 100 -14.7 -4.66833 | overlap 3283612 ATCAGTCAGTCGTCA CCAGGGGCCATGATAAT TATTC ACTATCATGGCCCCTGC TTTTTACCATTGCAC TERM 3637 3283612 - 3283648 + F 100 -18.2 -3.39618 | overlap 3283611 TCAGTCAGTCGTCAC CAGGGGCCATGATAAT TATTC ACTATCATGGCCCCTG CTTTTTACCATTGCA YPA_2945 3283727 - 3284230 + | putative acetyltransferase YPA_2946 3285168 - 3284737 - | hypothetical protein YPA_2947 3285380 - 3285670 + | ornithine carbamoyltransferase 1 YPA_2948 3285676 - 3286386 + | ornithine carbamoyltransferase chain I YPA_2949 3287151 - 3286693 - | hypothetical protein TERM 3638 3287515 - 3287489 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 3287498, overlap 3287490 3287505 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3639 3287516 - 3287490 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 3287498, overlap 3287489 3287505 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3640 3287598 - 3287614 + H 75 -5.2 -4.79352 | CAATAACCTCATCAT TATTCC TTTAC GGAATA TTTTATTATCACTAA TERM 3641 3288517 - 3288497 - g 70 -3.2 -4.78107 | gap 1 TATTATTATTAAAAA CGTGC-CTG ACCC CAGTGCCCG CCGCCTGTTAATTCA YPA_2950 3287790 - 3288962 + | hypothetical protein YPA_2951 3288971 - 3289357 + | ABC transporter, periplasmic oligo-dipeptide/nickel binding protein TERM 3642 3289470 - 3289501 + G 76 -4.3 -4.94243 | opp_overlap 3289470 3289472 3289475, overlap 3289472 3289475 GTCTGTAGCATTAAA TACCACGCCGGGA ACCCCC TCCCGGCGTCATC TTTTGGTTTTTTTAC TERM 3643 3289499 - 3289472 - g 72 -9.8 -3.48024 | opp_overlap 3289472 3289470 3289475, overlap 3289470 3289475 CTGTAGCATTAAATA CCACGCCGGGAA CCCC CTCCCGGCGTCA TCTTTTGGTTTTTTT TERM 3644 3289475 - 3289496 + G 78 -13 -3.01018 | opp_overlap 3289472 3289470 3289475, overlap 3289472 3289470 TAGCATTAAATACCA CGCCGGGA ACCCCC TCCCGGCG TCATCTTTTGGTTTT TERM 3645 3289496 - 3289475 - g 80 -13.7 -2.88215 | opp_overlap 3289475 3289472 3289470, overlap 3289472 3289470 TAGCATTAAATACCA CGCCGGGAA CCCC CTCCCGGCG TCATCTTTTGGTTTT YPA_2952 3289453 - 3290502 + | putative transporter, permease protein YPA_2953 3290521 - 3291357 + | putative transporter, permease protein TERM 3646 3291775 - 3291742 - gf 86 -11.7 -3.28712 | opp_overlap 3291744, overlap 3291744 TCTGTTGCTGCATAA CACCCTTTCAAGCGC TGAT GCGCATGAACGGGTA TTAAATGCACTGGCC TERM 3647 3291773 - 3291744 - gf 86 -12.1 -3.21276 | opp_overlap 3291744, overlap 3291742 TGTTGCTGCATAACA CCCTTTCAAGCGC TGAT GCGCATGAACGGG TATTAAATGCACTGG TERM 3648 3291744 - 3291773 + GF 86 -12.1 -3.09327 | opp_overlap 3291744 3291742 TGTTGCTGCATAACA CCCTTTCAAGCGC TGAT GCGCATGAACGGG TATTAAATGCACTGG YPA_2954 3291320 - 3292228 + | putative ABC transporter transporter, ATP-binding protein YPA_2955 3292215 - 3292931 + | putative ABC transporter, ATP-binding protein TERM 3649 3293136 - 3293123 - f 75 -5.3 -4.82901 | CCCTCGCCATAAAAA TCACA ATTC TGTGA CGTACTGAACAGGGA TERM 3650 3293296 - 3293319 + F 78 -10.2 -3.24245 | overlap 3293299 AGCATCCACATCCCC CTCGCAGCCC TGAT GTGCTGCGGG TTGCCTTGTGGATAA TERM 3651 3294337 - 3294327 - g 76 -6.8 -4.56597 | GGGCTTGGGTAAAAA CCGT AAA ACGG CGGTATTCCCAAAAC YPA_2956 3293365 - 3295503 + | anaerobic ribonucleoside triphosphate reductase TERM 3652 3295615 - 3295586 - f 74 -9.2 -3.33492 | GTAGGTAGGCGACAA CCTCAGGCCTCG TCAATG CGAGGCCTGCTG ATGGGCTGAGTCACC nrdG 3295710 - 3296144 + | anaerobic ribonucleotide reductase-activating protein YPA_2958 3296472 - 3297197 + | putative transcriptional regulator TERM 3653 3297355 - 3297373 + G 87 -8 -4.79352 | overlap 3297356 AATTGCAGGCGCGGA TGGGGGCC ACC GGCCGCCG TTTTATTCTCGGTGA YPA_2959 3297198 - 3297674 + | PhnG protein phnH 3297674 - 3298300 + | carbon-phosphorus lyase complex subunit YPA_2961 3298300 - 3299478 + | PhnI protein YPA_2962 3299471 - 3300352 + | PhnJ protein phnK 3300352 - 3301143 + | phosphonates transport ATP-binding protein TERM 3654 3301322 - 3301291 - f 100 -12.4 -3.5393 | AGGACGTCGGCGAAA GGCGTCAACCTACA GGGA TGTAGGTTAAAGCC AGCCCGTAAAGCCGA TERM 3655 3301367 - 3301355 - f 71 -9.1 -3.30605 | opp_overlap 3301353 AGATGAAGAAGGGAA CCCAC GTA GTGGG CGTTGGATGTTGAGC TERM 3656 3301395 - 3301420 + F 81 -11.9 -2.52543 | gap 1, opp_overlap 3301387 3301386 AGCAAAGCCGCAGGT GCAGGAGGGGCG GCC TGCCC-TCCTGC TCGATTGCAGGCACT TERM 3657 3302146 - 3302135 - g 71 -7.2 -4.02051 | opp_overlap 3302135 3302134 3302143 GATGAAGCTAAACAA CGCG GTGC CGCG ATTGTCGGGATTTTC YPA_2964 3301532 - 3302251 + | phosphonates transport ATP-binding protein YPA_2965 3302248 - 3303384 + | PhnM protein YPA_2966 3303384 - 3303965 + | ribose 1,5-bisphosphokinase phnP 3303956 - 3304708 + | carbon-phosphorus lyase complex accessory protein YPA_2968 3305359 - 3304721 - | hypothetical protein YPA_2969 3305954 - 3305511 - | hypothetical protein YPA_2970 3307219 - 3306053 - | hypothetical protein TERM 3658 3307111 - 3307097 - G 73 -9.2 -3.67597 | CGCTTCACTCAATAA CCGACG TAA CGCCGG TTGCAGAGGTGAAAA YPA_2971 3308328 - 3307234 - | putative sugar ABC transporter, ATP-binding protein TERM 3659 3307373 - 3307363 - G 70 -8.2 -3.77209 | overlap 3307364 AAATACAGAGGTAAA GCGG CCC CCGC CCGTGCTGCAAAAGA TERM 3660 3307976 - 3307964 - G 70 -9.1 -3.5393 | opp_overlap 3307962 AGCAGCGCTTGTAAA CCGAG CAA CTCGG CGGTTGATTCGACCT TERM 3661 3307978 - 3307990 + g 71 -5.5 -4.4773 | ACCGAGCAACTCGGC GGTTG ATT CGACC TTTTGGTTAATATCA YPA_2972 3309179 - 3308340 - | sugar transport system, permease protein TERM 3662 3309205 - 3309215 + r 77 -4.6 -5.03314 | CGGCTCGGTTAGTAA CGGG CGA TCCG TTTTTTCAAGGTGAG YPA_2973 3310082 - 3309198 - | sugar transport system, permease protein TERM 3663 3309849 - 3309825 - G 72 -8.5 -3.95653 | AAAGAAGGCGATAAA CGCGGCCACCA CCA TGGTGACCAGG ACATATAACAACGTG YPA_2974 3311403 - 3310090 - | putative sugar binding protein YPA_2975 3311964 - 3313187 + | hypothetical protein TERM 3664 3315054 - 3315068 + G 76 -5.6 -4.75174 | overlap 3315056 ACCAACAACCAGCAG CTCAGG TCA CCTGTG TTTTTGACTTGAATG YPA_2976 3313211 - 3315229 + | hypothetical protein TERM 3665 3315712 - 3315696 - g 100 -8 -5.32396 | ACAGCAAAAAGAAAA GCTGGT GATTG ACCAGC CGAGGTTATTGACAA YPA_2977 3315460 - 3315747 + | GIY-YIG nuclease superfamily protein YPA_2978 3316428 - 3315922 - | putative acetyltransferase YPA_2979 3317024 - 3316422 - | putative lipid carrier protein TERM 3666 3316694 - 3316677 - GH 70 -7.7 -3.58343 | opp_overlap 3316676 GGCATCACCGCTAAA GCTGACA TCGG CGTCAGC CTGTTGGCTCACGAG YPA_2980 3317024 - 3317149 + | hypothetical protein TERM 3667 3317302 - 3317328 + G 71 -7.3 -4.11295 | gap 1, opp_overlap 3317301 3317300, overlap 3317320 TACCTGCATTAAAGG CCGCAATCGACA ATGG TGCCGAT-GCGG TTTATATCGGTTTGA YPA_2981 3317259 - 3318254 + | putative protease YPA_2982 3318266 - 3319144 + | hypothetical protein TERM 3668 3319160 - 3319204 + T 100 -16 -4.183 | gap 1, opp_overlap 3319167 3319170, overlap 3319167 ACGGCCTTGCCTTAT CAAGTAATAACAGGGAGGTCA TTGC TGGCCTCCCTGTTATT-CATG TTTATTAACGCTTAA TERM 3669 3319198 - 3319167 - T 100 -16 -3.39895 | opp_overlap 3319160 3319167, overlap 3319170 TGCCTTATCAAGTAA TAACAGGGAGGTCA TTGC TGGCCTCCCTGTTA TTCATGTTTATTAAC TERM 3670 3319167 - 3319198 + T 100 -18.2 -3.54382 | opp_overlap 3319167 3319170, overlap 3319160 TGCCTTATCAAGTAA TAACAGGGAGGTCA TTGC TGGCCTCCCTGTTA TTCATGTTTATTAAC TERM 3671 3319195 - 3319170 - T 100 -13.3 -3.83844 | opp_overlap 3319167 3319160, overlap 3319167 CTTATCAAGTAATAA CAGGGAGGTCA TTGC TGGCCTCCCTG TTATTCATGTTTATT YPA_2983 3320691 - 3319285 - | outer membrane efflux lipoprotein TERM 3672 3320243 - 3320261 + g 83 -3 -5.41143 | opp_overlap 3320243 3320246, overlap 3320244 AGATAGGTTTCAAAT TCAGCATG AGA CAAGCTGC TTTTTTTACCAAATA TERM 3673 3320414 - 3320448 + g 81 -13.6 -3.1247 | gap 1 ACCGTTGGTATCTGG GCGGCCCGTTGCACA CCATAT TGCGCA-CGGGCCGC TTCGATATCGGCAAT YPA_2984 3323818 - 3320693 - | multidrug efflux protein TERM 3674 3322152 - 3322139 - G 73 -5.9 -4.56597 | TTCGGTCGGTAAAAA GCCCG TTGG CAGGC GAATAAACAACACAC YPA_2985 3324982 - 3323822 - | multidrug efflux protein TERM 3675 3324515 - 3324525 + g 70 -2.4 -5.00884 | opp_overlap 3324502 GATACGCGCCGTTTC CAGC GCA GCAG TTTTTTCGGCCACAT TERM 3676 3324567 - 3324599 + g 70 -2 -4.9138 | TGCTGATAGCTGGTT TGG-GCGTCATCAGCA TCT TGCTGC-GACACACCA TTTTCTTTGGCTAAT YPA_2986 3325490 - 3326545 + | hypothetical protein TERM 3677 3326597 - 3326582 - T 100 -10.4 -5.61596 | opp_overlap 3326582 ACCGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTGAGGTTGTTGAC TERM 3678 3326582 - 3326597 + T 82 -10.4 -3.72051 | opp_overlap 3326582 ACCGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTGAGGTTGTTGAC TERM 3679 3326677 - 3326703 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3326666, overlap 3326672 3326678 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3680 3326678 - 3326704 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3326666, overlap 3326672 3326677 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3681 3326768 - 3326783 + T 100 -10.4 -4.82855 | TGTCAGCAGTCTGAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC YPA_2987 3327111 - 3326800 - | putative transcriptional regulatory protein YPA_2988 3327503 - 3327135 - | hypothetical protein YPA_2989 3327719 - 3327546 - | hypothetical protein TERM 3682 3327687 - 3327702 + g 100 -10.4 -4.82855 | opp_overlap 3327687 ATAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC TERM 3683 3327702 - 3327687 - G 100 -10.4 -5.65177 | opp_overlap 3327687 ATAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC YPA_2990 3329733 - 3327739 - | ATP-dependent RNA helicase DeaD TERM 3684 3328942 - 3328960 + g 72 -3.8 -4.7497 | ACGCTCAAGGGCTTC TGCTACTT CCA AGGTCGCA TTTTTGGTACGTACG YPA_2991 3330804 - 3329920 - | lipoprotein NlpI TERM 3685 3330040 - 3330052 + g 73 -9.1 -3.78934 | opp_overlap 3330039 CGTCAGTTTGAACAG CACCG AAG CGGTG TTCTTGTCCCCCAGA TERM 3686 3330917 - 3330886 - R 100 -13.8 -3.48276 | opp_overlap 3330883 CCGCCCCTGAGATAA CACAGCCCCTTACC GATG AGCAAGGAGCTGTG GAATGACTTAATTAC TERM 3687 3330936 - 3330973 + r 100 -11.3 -4.0274 | TGACTTAATTACTCT GCTGCTGCTTCTGGTGC TTCT GCGTCAGGAGTAGTGGC TTCTTTGATGCTCAG YPA_2992 3333124 - 3330929 - | polynucleotide phosphorylase/polyadenylase TERM 3688 3333332 - 3333350 + r 77 -11 -2.73735 | overlap 3333325 3333342 3333344 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPA_2993 3334098 - 3333313 - | transposase for insertion sequence IS1661 YPA_2994 3334844 - 3334152 - | insertion element IS1661 DNA-binding protein TERM 3689 3334667 - 3334723 + g 73 -10.3 -3.30159 | gap 1, opp_overlap 3334672 3334677 3334698, overlap 3334668 3334678 AAAAAGGGTGTTTCA TTGAACCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAGTGCAC TTATGGCCCCATTGG TERM 3690 3334668 - 3334722 + g 78 -13.8 -2.57881 | gap 1, opp_overlap 3334672 3334677 3334698, overlap 3334667 3334678 AAAAGGGTGTTTCAT TGAACCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAGTGCA CTTATGGCCCCATTG TERM 3691 3334718 - 3334672 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 3334668 3334667 3334678, overlap 3334677 3334698 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCACTTATGGCCCC TERM 3692 3334713 - 3334677 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 3334668 3334667 3334678, overlap 3334672 3334698 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCACTTATG TERM 3693 3334678 - 3334713 + g 79 -12.7 -3.08471 | opp_overlap 3334677 3334672 3334698, overlap 3334668 3334667 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCACTTATG TERM 3694 3334708 - 3334698 - G 76 -5.4 -4.88736 | opp_overlap 3334678 3334668 3334667, overlap 3334677 3334672 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAC YPA_2995 3335835 - 3334882 - | ornithine cyclodeaminase YPA_2996 3336791 - 3335829 - | hypothetical protein TERM 3695 3337029 - 3337016 - g 80 -2.3 -5.43866 | GAATGCGCAAAAAAA CCGTT TCTT ACCGG AACAGCAGCTTACCT YPA_2997 3336999 - 3337310 + | hypothetical protein YPA_2998 3337300 - 3337614 + | hypothetical protein YPA_2999 3337992 - 3337654 - | hypothetical protein TERM 3696 3337843 - 3337878 + g 71 -10.6 -3.05596 | gap 1, overlap 3337848 GGGGCGTAGTGCCCA GCCGGTATCGTCAT-CT TTG AGCATGGCGATATTGGC TTCGGTGCCAGAGTA TERM 3697 3338184 - 3338196 + H 77 -3.5 -5.23316 | opp_overlap 3338183 ATTTTCCAATACGAT TTTTT GCG AAAAA TTTTTTGATCTCATG YPA_3000 3338360 - 3338773 + | heat shock protein IbpA YPA_3001 3339054 - 3339518 + | heat shock chaperone IbpB TERM 3698 3339684 - 3339715 + F 100 -10.2 -4.41548 | overlap 3339686 TCCCTTGTTTGTCTT TTCACCGGAGAG ATTCCCCG CTCTCCGGTGCA TTTTGTGGCGTATCC TERM 3699 3339686 - 3339713 + F 90 -12.8 -2.54186 | overlap 3339684 CCTTGTTTGTCTTTT CACCGGAGAG ATTCCCCG CTCTCCGGTG CATTTTGTGGCGTAT YPA_3002 3339891 - 3341549 + | hypothetical protein TERM 3700 3341577 - 3341601 + T 100 -12.9 -4.23674 | opp_overlap 3341575 3341574 CGGGCTATTAAACTT CAGGGCAGC GTAATTG GCTGCCCTG TTTGTATTGGTGAAG avtA 3343032 - 3341662 - | valine--pyruvate transaminase TERM 3701 3343092 - 3343082 - R 91 -5.4 -5.59502 | TAAAAAAGTAAAAAA CCAT GAA ATGG CAAGAGGAGAGAATT YPA_3004 3343825 - 3343382 - | hypothetical protein malS 3346303 - 3344240 - | periplasmic alpha-amylase precursor TERM 3702 3346364 - 3346398 + r 71 -4.2 -4.82901 | GGCAGATTCAGTGTG CCGCTTGGCGAAGA AATAGCC TCATCCCTGAGCGG TTTTTGTAGGGAGGA TERM 3703 3346552 - 3346519 - R 76 -9.7 -3.34398 | overlap 3346517 TTGGCCTGCCAAACA TCTATTGACCCGC TAAACAGG GCAGGCCAATAGA ATTGACGGGCGGATG YPA_3006 3347553 - 3346573 - | putative D-isomer specific 2-hydroxyacid dehydrogenase YPA_3007 3348072 - 3348716 + | hypothetical protein TERM 3704 3348761 - 3348789 + T 72 -7.6 -3.80133 | gap 2, opp_overlap 3348776, overlap 3348758 GAAAATGGGGAGCAG TGCGGATAA-G-CC AAA GGACATTATCCGCA TGTTTTATCACGGTG YPA_3008 3349506 - 3348847 - | putative outer membrane lipoprotein YPA_3009 3350319 - 3349864 - | hypothetical protein YPA_3010 3350888 - 3350316 - | DNA-3-methyladenine glycosylase TERM 3705 3350713 - 3350726 + g 70 -2.3 -5.00884 | overlap 3350724 TGATGGAAGCTTTTG CGGTA ATGC TCCCG TTTTTTGAGCACGGT glyQ 3351216 - 3352130 + | glycyl-tRNA synthetase subunit alpha TERM 3706 3353777 - 3353815 + G 74 -7.6 -4.25283 | gap 2, opp_overlap 3353776 TAGCGTCGATACCAT TCAGGCGGTCTTGGCTCG TCGTC CGA-CCAA-ACCGGCTGA TTTTGATGCGCGAGT glyS 3352140 - 3354209 + | glycyl-tRNA synthetase subunit beta TERM 3707 3354235 - 3354263 + F 73 -7.4 -4.13816 | opp_overlap 3354240, overlap 3354240 AACATCGTGCTGGGC AATAAGGGGAGC TATAC GCTCCCCTTACG TTATGTTTTTGTGGG TERM 3708 3354258 - 3354240 - f 90 -11.7 -3.61398 | opp_overlap 3354235 3354240 CGTGCTGGGCAATAA GGGGAGC TATAC GCTCCCC TTACGTTATGTTTTT TERM 3709 3354240 - 3354258 + F 86 -11.7 -3.33845 | opp_overlap 3354240, overlap 3354235 CGTGCTGGGCAATAA GGGGAGC TATAC GCTCCCC TTACGTTATGTTTTT YPA_3013 3354494 - 3355213 + | hypothetical protein TERM 3710 3355337 - 3355311 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 3355320, overlap 3355312 3355327 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3711 3355338 - 3355312 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 3355320, overlap 3355311 3355327 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3712 3355414 - 3355433 + F 100 -11.4 -4.44914 | opp_overlap 3355412 CTTTGTCAATAACCT CAGGGGCC TTTT GGTCCCTG TTATTTTCTTACATA TERM 3713 3355693 - 3355705 + F 72 -6.3 -4.26903 | GTTGTTTTGTGTGAC TTTCG TCA CGAAA TTTTCGTGAGCTACG TERM 3714 3355826 - 3355858 + F 71 -4.2 -4.89567 | AAAATAATTATATCG CGCTCTTATTGTTA GCGCG TACCAATAGGGGTG TTTTATGTTTTCACC YPA_3014 3355863 - 3357794 + | PTS system, mannitol-specific IIABC component YPA_3015 3357931 - 3359094 + | mannitol-1-phosphate 5-dehydrogenase TERM 3715 3359120 - 3359157 + F 73 -9.1 -3.54424 | overlap 3359121 3359123 TAAGCCAGCTATGTC CCATTGGCCTGATAACG GAAA CGATAGCGGGCCAATGA TTTAAGACACTAAAG TERM 3716 3359121 - 3359156 + F 88 -12.6 -2.72511 | overlap 3359120 3359123 AAGCCAGCTATGTCC CATTGGCCTGATAACG GAAA CGATAGCGGGCCAATG ATTTAAGACACTAAA TERM 3717 3359123 - 3359154 + F 71 -9.4 -2.90813 | overlap 3359121 3359120 GCCAGCTATGTCCCA TTGGCCTGATAACG GAAA CGATAGCGGGCCAA TGATTTAAGACACTA mtlR 3359301 - 3359855 + | mannitol repressor protein TERM 3718 3360253 - 3360230 - g 82 -7.4 -4.66456 | gap 1, overlap 3360232 3360243 AAAGAAAAAGAGAAA CTGGCCGCTGA AAT TCAGC-GCCTG AAAGAAGTACGGGTA TERM 3719 3360285 - 3360274 - g 70 -2.2 -5.03715 | AGTACGGGTAAAAAA CCTG AGTG CAGA AGCTCAAAAACTGGC YPA_3017 3360104 - 3360460 + | hypothetical protein TERM 3720 3360464 - 3360452 - T 71 -3.3 -5.0538 | opp_overlap 3360442 GGCTACGCTAAAAAA GCGTT TTG ATCGC CGCTTTGCGGTAACC TERM 3721 3360479 - 3360506 + T 80 -10.5 -3.56375 | overlap 3360478 3360475 3360471 3360481 CCGCTTTGCGGTAAC CTCTGGGTGGC ATGGCC GCCACCCGGTG TGTTGTTCCTTTTGC TERM 3722 3360481 - 3360504 + T 86 -11.7 -3.33839 | overlap 3360479 3360478 3360475 3360471 GCTTTGCGGTAACCT CTGGGTGGC ATGGCC GCCACCCGG TGTGTTGTTCCTTTT YPA_3018 3361105 - 3360629 - | hypothetical protein TERM 3723 3361689 - 3361699 + r 70 -2.6 -5.06816 | TGTCTTTTTTTGTAT TTAA CGC TTAA TTTTTCTTGCAAACT TERM 3724 3361731 - 3361741 + r 100 -5.4 -6.38655 | CGTGCTTTGCTACAC GTGA CAT TCAC TTTTTTTTTCTATTT YPA_3019 3361970 - 3361725 - | hypothetical protein YPA_3020 3362729 - 3362160 - | chemotaxis sensory transducer YPA_3021 3363618 - 3362839 - | transposase/IS protein TERM 3725 3363537 - 3363551 + g 77 -11.4 -3.3506 | overlap 3363550 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3022 3364640 - 3363618 - | transposase for insertion sequence IS100 TERM 3726 3364662 - 3364644 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_3023 3365991 - 3364654 - | methyl-accepting chemotaxis protein II TERM 3727 3366294 - 3366326 + r 76 -9.2 -3.50722 | opp_overlap 3366298, overlap 3366292 3366296 3366298 GAAACTTTAACAATA AAAATGCCAGCAAG AGGGC CTTGCTGGCATGTA TCTTTCGTACTTGAA TERM 3728 3366296 - 3366324 + r 89 -11.8 -3.32233 | opp_overlap 3366298, overlap 3366294 3366292 3366298 AACTTTAACAATAAA AATGCCAGCAAG AGGGC CTTGCTGGCATG TATCTTTCGTACTTG TERM 3729 3366322 - 3366298 - R 100 -15.1 -5.29445 | opp_overlap 3366296 3366294 3366292 3366298 CTTTAACAATAAAAA TGCCAGCAAGA GGG CCTTGCTGGCA TGTATCTTTCGTACT TERM 3730 3366298 - 3366322 + r 100 -14.4 -3.21671 | opp_overlap 3366298, overlap 3366296 3366294 3366292 CTTTAACAATAAAAA TGCCAGCAAG AGGGC CTTGCTGGCA TGTATCTTTCGTACT TERM 3731 3366377 - 3366394 + r 70 -5.5 -4.42386 | opp_overlap 3366377 TCTTTGGCTATGCAA CGGGC GGTTTAAG GCCCG TTTTATGGATAAGCG YPA_3024 3367035 - 3366412 - | superoxide dismutase TERM 3732 3367214 - 3367233 + r 71 -4.9 -4.7416 | overlap 3367217 ATAAAATTAATTTAT GATGCGG CGTAAC CCGCTTC TTTTTGACGTTTTAC TERM 3733 3367217 - 3367230 + r 70 -5.2 -4.45259 | overlap 3367214 AAATTAATTTATGAT GCGG CGTAAC CCGC TTCTTTTTGACGTTT TERM 3734 3367413 - 3367435 + r 78 -4.2 -5.22312 | TCGCCACTATCGTTA TATCTTTGGT GTC ATCAATGATA TTTTTTGGTGTGGAT YPA_3025 3368295 - 3367471 - | formate dehydrogenase accessory protein TERM 3735 3367784 - 3367821 + g 79 -9.1 -4.18018 | opp_overlap 3367771 3367770, overlap 3367786 ATCCACGCGGCAGCA TGGGTACAGCCGGTGAG TTGA CCGACCGGTTGTACCTG TTTTAGCTGGGCAAG TERM 3736 3367786 - 3367819 + g 85 -11.7 -3.69216 | opp_overlap 3367770, overlap 3367784 CCACGCGGCAGCATG GGTACAGCCGGTGAG TTGA CCGACCGGTTGTACC TGTTTTAGCTGGGCA YPA_3026 3368492 - 3369079 + | twin-arginine translocation pathway signal TERM 3737 3370214 - 3370196 - g 73 -3 -4.96501 | overlap 3370197 3370198 3370200 CCGGATAAAAACAAA GTGACAGC GGC GCTGTCGA AGCTGAAATTCTTGG YPA_3027 3369128 - 3371539 + | hypothetical protein TERM 3738 3372208 - 3372187 - g 76 -11.6 -3.28712 | opp_overlap 3372172, overlap 3372171 3372172 CCGTGGGTTTGATAA CGCAGGGT TATATG ACCCTGCG GGCGTCGGCGGTACC YPA_3028 3371552 - 3372523 + | formate dehydrogenase-O, iron-sulfur subunit TERM 3739 3372564 - 3372535 - g 100 -7 -5.77571 | overlap 3372536 ATGAAAAAAGAAAAA CCGATCCAGCGC TACAGC GCGCCGGAGCGC ATTAACCACTGGATA TERM 3740 3372563 - 3372536 - g 84 -10.5 -4.02882 | overlap 3372535 TGAAAAAAGAAAAAC CGATCCAGCGC TACAGC GCGCCGGAGCG CATTAACCACTGGAT TERM 3741 3372675 - 3372720 + G 74 -4.7 -4.81734 | gap 2, overlap 3372675 3372684 3372687 TGGTACACCACAGAT GG-CGCGCAT-TCTTCACCCC TTTGCC GGGGTGGTGATGTTCGCGGCC TTTTTGATCATGTTT YPA_3029 3372520 - 3373194 + | formate dehydrogenase-O subunit gamma TERM 3742 3373248 - 3373275 + G 74 -7.6 -4.12942 | opp_overlap 3373236 3373249 3373252, overlap 3373252 CAACGCGAAAAAGGT ACAACGGCGGGG AATA TCCCGCCGTTAC TTTTCGCAAATTTAA TERM 3743 3373274 - 3373249 - g 77 -12.6 -2.85019 | opp_overlap 3373248 3373252, overlap 3373236 3373252 AACGCGAAAAAGGTA CAACGGCGGG GAATAT CCCGCCGTTA CTTTTCGCAAATTTA TERM 3744 3373252 - 3373271 + G 85 -12.8 -3.67175 | opp_overlap 3373249 3373236 3373252, overlap 3373248 GCGAAAAAGGTACAA CGGCGGGG AATA TCCCGCCG TTACTTTTCGCAAAT TERM 3745 3373271 - 3373252 - g 82 -12.1 -3.5616 | opp_overlap 3373252 3373248, overlap 3373249 3373236 GCGAAAAAGGTACAA CGGCGGG GAATAT CCCGCCG TTACTTTTCGCAAAT YPA_3030 3373194 - 3374123 + | formate dehydrogenase accessory protein FdhE YPA_3031 3374307 - 3375695 + | selenocysteine synthase YPA_3032 3375692 - 3377644 + | selenocysteinyl-tRNA-specific translation factor YPA_3033 3378115 - 3377651 - | transposase TERM 3746 3377926 - 3377914 - G 86 -6.3 -5.18726 | CCTCCAGAATAAAAA TTGAG TCC CTCAA GGTGCCCGGTACAAC YPA_3034 3378404 - 3378736 + | hypothetical protein TERM 3747 3378721 - 3378748 + T 78 -9.2 -3.62235 | opp_overlap 3378727, overlap 3378719 3378724 ATATAGATATCTTTC CAATAAGGAGGA ATGA TCCTCCTTGCTG TCTATTTTCTTTCAT TERM 3748 3378742 - 3378727 - T 75 -9 -3.62224 | opp_overlap 3378724 3378721 3378719 ATATCTTTCCAATAA GGAGGA ATGA TCCTCC TTGCTGTCTATTTTC YPA_3035 3379331 - 3378750 - | hypothetical protein YPA_3036 3379595 - 3379410 - | hypothetical protein TERM 3749 3380036 - 3379993 - R 73 -7.4 -4.08394 | overlap 3379996 ATAGCGTGGGTAAAA CTATCCTGCTGGAGAAGC TACCTGAC GCTCCTCCAGCAGGGAAT AAACTTACTCGGTAG TERM 3750 3380033 - 3379996 - R 100 -13.5 -3.08032 | overlap 3379993 GCGTGGGTAAAACTA TCCTGCTGGAGAAGC TACCTGAC GCTCCTCCAGCAGGG AATAAACTTACTCGG YPA_3037 3381270 - 3380041 - | multidrug translocase TERM 3751 3381686 - 3381708 + r 71 -9 -3.32844 | CGATAGTGCGAAAGC GCGGGGTTCC AAG GGGGCCACGC TTATGCACTGAACCC TERM 3752 3381762 - 3381780 + r 77 -11 -2.73735 | overlap 3381755 3381772 3381774 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPA_3038 3382528 - 3381743 - | transposase for insertion sequence IS1661 YPA_3039 3383118 - 3382582 - | insertion element IS1661 DNA-binding protein TERM 3753 3383148 - 3383102 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 3383108 3383140, overlap 3383107 3383128 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCAGCGCGTGACCC TERM 3754 3383143 - 3383107 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 3383108 3383140, overlap 3383102 3383128 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCAGCGCGT TERM 3755 3383108 - 3383143 + g 79 -12.7 -3.05463 | opp_overlap 3383107 3383102 3383128, overlap 3383140 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCAGCGCGT TERM 3756 3383138 - 3383128 - H 75 -5.4 -4.88736 | opp_overlap 3383108, overlap 3383107 3383102 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAG TERM 3757 3383214 - 3383245 + H 76 -9.4 -3.54543 | gap 1, overlap 3383211 GTCCACTGCGTGGAT GCCCTCCGTCA-TCG TTT CGGCTGGCGGACGGC TTTACGCGGGTCCCT TERM 3758 3383292 - 3383278 - H 79 -8.5 -4.11216 | opp_overlap 3383278 GCGTGACGCCTAAAA CGGGC GTCCT GCCCG TTTTCCTTGCCTTCT TERM 3759 3383278 - 3383292 + H 95 -9.2 -4.46267 | opp_overlap 3383278 GCGTGACGCCTAAAA CGGGCG TCC TGCCCG TTTTCCTTGCCTTCT TERM 3760 3383642 - 3383630 - H 84 -2.7 -5.73672 | AAATAATGAAAAAAA CAATA GTA CATTG TTATTATATTTTTTG TERM 3761 3383859 - 3383832 - H 100 -7.2 -5.78622 | opp_overlap 3383832 TTATTTGAAAAAAAA CAGATTTAAAAA TCAA TTTTTGAATCTG TTAAGTATATTACTA TERM 3762 3383832 - 3383859 + H 72 -9.4 -3.19889 | opp_overlap 3383832 TTATTTGAAAAAAAA CAGATTTAAAAA TCAA TTTTTGAATCTG TTAAGTATATTACTA TERM 3763 3384173 - 3384183 + H 70 -5.4 -4.49316 | opp_overlap 3384173, overlap 3384177 AAAGGGGCTACACCA TGGT TAA ACCA TTTATTCTTGCTGCT YPA_3040 3384449 - 3384640 + | putative outer membrane lipoprotein Pcp precursor TERM 3764 3384879 - 3384863 - T 72 -6.5 -4.31837 | AAGAAAGGGAACAAA CAGCCAT ACG AAGGCTG AGTATCCGGCATCAT TERM 3765 3385058 - 3385031 - T 73 -7.1 -4.08706 | opp_overlap 3385030, overlap 3385033 3385049 GTCGTAGCAGAGAAA TAGCATTGTCT GAAATA AGACAATGCTC ACATATTGTAATCTA TERM 3766 3385056 - 3385033 - T 80 -9.7 -3.6393 | opp_overlap 3385030, overlap 3385031 3385049 CGTAGCAGAGAAATA GCATTGTCT GAAATA AGACAATGC TCACATATTGTAATC YPA_3041 3385589 - 3385134 - | hypothetical protein TERM 3767 3385195 - 3385181 - G 87 -4.4 -5.49579 | opp_overlap 3385181 TCAGAAAAAATAAAA TAATAA AAC TTATTA CTGTTGATATAATGT YPA_3042 3386182 - 3385586 - | hypothetical protein TERM 3768 3385735 - 3385760 + g 82 -4.1 -5.35459 | gap 1, opp_overlap 3385733 3385735 3385737, overlap 3385737 CCATAAAGAAAGACA CATTACTTCTGC CAT GCAGA-GTAATA TTTTTTATCGTGTCT TERM 3769 3385737 - 3385758 + g 74 -6.7 -4.30057 | gap 1, opp_overlap 3385735 3385733 3385737, overlap 3385735 ATAAAGAAAGACACA TTACTTCTGC CAT GCAGA-GTAA TATTTTTTATCGTGT TERM 3770 3386021 - 3386035 + g 80 -4.3 -5.18357 | GACTTTCTCGCCATC CAAGA AAACG TCTTG TTTTTTGGTGAGTTG TERM 3771 3386427 - 3386413 - R 80 -6.4 -4.80455 | opp_overlap 3386413 CAGCGAAAGAGAAAA TCGGTC AGA AACCGA TTTAAAATTGACACG YPA_3043 3387553 - 3386642 - | hypothetical protein TERM 3772 3387026 - 3387015 - G 73 -5.8 -4.5123 | overlap 3387025 AACCGACTAAAGAAA GGTG TTAA CACC GCACTACTGCGCTGG YPA_3044 3388419 - 3387553 - | flagellar motor protein MotA TERM 3773 3388197 - 3388177 - G 70 -9.1 -3.55814 | opp_overlap 3388192, overlap 3388180 3388190 CAGCAATTCATACAA CAACAACAA TAA TTGCTGTTG AAACTCAACCGTATA YPA_3045 3389130 - 3388435 - | flagellar biosynthesis sigma factor YPA_3046 3389606 - 3389136 - | putative flagellar biogenesis protein TERM 3774 3389570 - 3389588 + g 86 -9 -4.51224 | overlap 3389581 GCAATAGGAATGCCC GTATTTTC GGC GAAAATAC TTTCTTCTTAGTCTT YPA_3047 3390883 - 3389645 - | putative flagellar hook-length control protein YPA_3048 3391154 - 3390828 - | hypothetical protein YPA_3049 3391536 - 3391156 - | putative flagellar protein YPA_3050 3392823 - 3391546 - | putative flagellar hook-associated protein TERM 3775 3392999 - 3392975 - R 73 -5.8 -4.41844 | gap 1, opp_overlap 3392978, overlap 3392978 AAAACGTTGATAAAA GAATACCGCTC CGAA AAGCGGTA-TC GATTAAGTTCATGGC TERM 3776 3392997 - 3392978 - R 82 -8.6 -4.31397 | opp_overlap 3392978, overlap 3392975 ACGTTGATAAAAGAA TACCGCTC CGAA AAGCGGTA TCGATTAAGTTCATG YPA_3051 3394248 - 3393043 - | putative flagellin TERM 3777 3394445 - 3394426 - R 100 -8.6 -5.60689 | opp_overlap 3394426 GTATACAATAAAAAA TACCGCTC CAGG AAGCGGTA TCGATTTATTAATGG TERM 3778 3394505 - 3394486 - R 81 -9.3 -3.87815 | TTCGAGTGGCAGAAA GGGGGTA ACTGAG TACCCCC CTGCAACGCGAAGGA YPA_3052 3395730 - 3394531 - | putative flagellin TERM 3779 3395927 - 3395908 - R 100 -8.6 -5.60689 | opp_overlap 3395908 GTATACAATAAAAAA TACCGCTC CAGG AAGCGGTA TCGATTTATTAATGG TERM 3780 3396218 - 3396199 - R 81 -9.3 -3.87815 | TTCGAGTGGCAGAAA GGGGGTA ACTGAG TACCCCC CCTGCAACGCGAAGG YPA_3053 3397441 - 3396245 - | putative flagellin TERM 3781 3397596 - 3397612 + H 72 -7.3 -3.99805 | opp_overlap 3397596, overlap 3397592 3397588 TAGTATTTTAATAAC GCAGGTT ATT AATCTGC TTTAAATTTTTAAGA TERM 3782 3398390 - 3398402 + G 71 -5.5 -4.43859 | CAAGATAGGTTATCT GTTGG ATG CCAGC TTTTGTGAAATTATC YPA_3054 3398067 - 3399113 + | putative regulatory protein YPA_3055 3399094 - 3399540 + | hypothetical protein TERM 3783 3399623 - 3399590 - T 82 -6 -5.00616 | gap 1, overlap 3399591 3399592 CTGGGGCTGAAAAAA CGGCTGACATGTGCG ATCAA CGCACATG-CAGCTT GAAGAATAACGGGTA TERM 3784 3399622 - 3399591 - T 78 -9.5 -3.60048 | gap 1, overlap 3399590 3399592 TGGGGCTGAAAAAAC GGCTGACATGTGCG ATCAA CGCACATG-CAGCT TGAAGAATAACGGGT TERM 3785 3399621 - 3399592 - T 91 -13 -2.75708 | gap 1, overlap 3399591 3399590 GGGGCTGAAAAAACG GCTGACATGTGCG ATCAA CGCACATG-CAGC TTGAAGAATAACGGG YPA_3056 3400717 - 3399704 - | hypothetical protein flgL 3401652 - 3400729 - | flagellar hook-associated protein FlgL TERM 3786 3400878 - 3400891 + g 80 -2.4 -5.44721 | TGGCATTCGACAGCT CCAT CTCTTC ATGG TTTTTTTGCAGTAAT flgK 3403042 - 3401681 - | flagellar hook-associated protein FlgK flgJ 3403448 - 3403155 - | peptidoglycan hydrolase TERM 3787 3403404 - 3403427 + g 74 -7.4 -4.26871 | gap 1, opp_overlap 3403405 3403406, overlap 3403405 3403406 GAGGTCACCGACAAA AC-TCCCCGGT ATC ACCGGGGATGA TTTATTAATGGCTTC TERM 3788 3403425 - 3403405 - G 91 -11.1 -4.42653 | opp_overlap 3403404 3403405 3403406, overlap 3403406 AGGTCACCGACAAAA CTCCCCGGT ATC ACCGGGGAT GATTTATTAATGGCT TERM 3789 3403405 - 3403426 + g 71 -10.9 -3.154 | gap 1, opp_overlap 3403405 3403406, overlap 3403404 3403406 AGGTCACCGACAAAA C-TCCCCGGT ATC ACCGGGGATG ATTTATTAATGGCTT TERM 3790 3403424 - 3403406 - G 86 -14.6 -3.2511 | opp_overlap 3403405 3403404 3403406, overlap 3403405 GGTCACCGACAAAAC TCCCCGGT ATC ACCGGGGA TGATTTATTAATGGC TERM 3791 3403406 - 3403424 + g 86 -14.6 -3.12942 | opp_overlap 3403406 3403405, overlap 3403405 3403404 GGTCACCGACAAAAC TCCCCGGT ATC ACCGGGGA TGATTTATTAATGGC flgI 3404633 - 3403458 - | flagellar basal body P-ring protein TERM 3792 3403879 - 3403851 - G 71 -6.6 -4.14541 | gap 1, opp_overlap 3403856 CAGCAATGACATAAA CGCCACGCG-CGC ACCG GCGTCTTGTGGCG CATTGACCATAACGT flgH 3405312 - 3404647 - | flagellar basal body L-ring protein TERM 3793 3404831 - 3404847 + g 79 -7.3 -4.56775 | ATATATTCATCGCCT TGGTTGA GGG TCAGCCA TTTTTCGCCACGGAT flgG 3406132 - 3405347 - | flagellar basal body rod protein FlgG flgF 3406931 - 3406200 - | flagellar basal body rod protein FlgF TERM 3794 3406384 - 3406410 + g 76 -5.9 -4.73105 | gap 1 TCACGGGCCGCCGGG CCACGG-TTACT GACC AGTAAACCGCGG TTGTTTTTTCTGAGT TERM 3795 3406670 - 3406680 + g 71 -5.4 -4.57073 | CACTGAGCACCGCGA TCAG CCC CTGA TTTTTAAGGGCAATA flgE 3408172 - 3406931 - | flagellar hook protein FlgE TERM 3796 3407815 - 3407799 - G 70 -11.5 -2.62184 | opp_overlap 3407812 CCCGCCTGGATATTA CCGGCAG CAT CCGCCGG GTAGCCCTGTAATTT flgD 3408883 - 3408227 - | flagellar basal body rod modification protein flgC 3409311 - 3408886 - | flagellar basal body rod protein FlgC flgB 3409721 - 3409314 - | flagellar basal body rod protein FlgB TERM 3797 3410605 - 3410588 - g 76 -3.3 -5.17576 | overlap 3410589 TATCAAGGTAAAAAA CCTCAGC AGTG GCCGAGT GGTGACCGCCACGGT flgA 3409749 - 3410666 + | flagellar basal body P-ring biosynthesis protein FlgA YPA_3069 3410895 - 3411161 + | putative flagellar regulatory protein YPA_3070 3411168 - 3411593 + | hypothetical protein TERM 3798 3411861 - 3411890 + T 100 -13.7 -5.67063 | opp_overlap 3411861 CCACCCAATAAAAAA TCCGTCATAGAGA ATAT TCCCTATGACGGA TTTTTTTATGGTCGC TERM 3799 3411890 - 3411861 - T 100 -15.9 -5.4833 | opp_overlap 3411861 CCACCCAATAAAAAA TCCGTCATAGAGA ATAT TCCCTATGACGGA TTTTTTTATGGTCGC YPA_3071 3412358 - 3411921 - | hypothetical protein fliI 3413702 - 3412362 - | flagellum-specific ATP synthase TERM 3800 3413648 - 3413628 - G 77 -11.8 -3.15544 | opp_overlap 3413624 CGTCACTCGCACTAA CCGGCCCG CCACT CGGGCCAG ATGAATGTTTTCGAT fliH 3414411 - 3413695 - | flagellar assembly protein H TERM 3801 3413733 - 3413723 - G 73 -3.2 -5.00616 | GGTTCCGTCAAAAAA CTGC TGT GCAA CGCACCAATGCATTG TERM 3802 3414379 - 3414397 + g 82 -3.8 -5.252 | overlap 3414382 AACCCGCAGTTTCAC TGCCCC CGCCCGT GGGGTA TTTTTTATCAACATC YPA_3074 3415222 - 3414416 - | flagellar motor switch protein G TERM 3803 3415259 - 3415277 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3075 3415281 - 3416303 + | transposase for insertion sequence IS100 TERM 3804 3416384 - 3416370 - g 77 -11.4 -3.3506 | overlap 3416361 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3076 3416303 - 3417082 + | transposase/IS protein YPA_3077 3417418 - 3417092 - | puative flagellar motor switch protein fliF 3419030 - 3417390 - | flagellar MS-ring protein YPA_3079 3419420 - 3419040 - | putative flagellar hook-basal body complex protein YPA_3080 3420465 - 3419437 - | sigma-54 transcriptional regulatory protein TERM 3805 3419882 - 3419866 - G 74 -7.3 -4.258 | GTACTTATTAATAAA TGCCTTC ACC AAAGGCA GAATATCCTCTGGCC TERM 3806 3421234 - 3421269 + GH 72 -7.6 -3.82262 | AAAATGCTAACCAGC CAGATGGGTAATATCG CATT CGATATCGACCGTCTG TTGTTACTTAACATT TERM 3807 3421411 - 3421398 - gH 76 -3.1 -5.1361 | AGAAAGGCTAAAAAA CAAAC TCGG GCTTG AAATAACCGATCTCT YPA_3081 3420988 - 3421533 + | putative flagellar motor switch protein TERM 3808 3421647 - 3421627 - g 88 -3.9 -5.67967 | AGCAGTAGAAAAAAA TGTCTCACT GTC AGAGAGGCA ACTTGAACACTTAGT YPA_3082 3421508 - 3421888 + | flagellar motor switch protein TERM 3809 3422250 - 3422238 - g 70 -3.4 -4.90266 | opp_overlap 3422238 GTGATTAATGAAAAA TACG GCCTG CGTA TTATTAACATCAATA YPA_3083 3421881 - 3422294 + | flagellar switch protein fliP 3422291 - 3423061 + | flagellar biosynthesis protein FliP YPA_3085 3423063 - 3423335 + | putative flagellar assembly protein YPA_3086 3423342 - 3424115 + | putative flagellar assembly protein TERM 3810 3424158 - 3424148 - g 74 -4.6 -4.76312 | overlap 3424149 3424152 GAGAAGAGTGAAAAA CCCA CAG CGGG GAAGCTGTCGAAAGC TERM 3811 3424787 - 3424770 - g 73 -2.7 -4.94243 | CCAAAAAAATGAAAA TGACC AAACAGGA GGTCA AACAAGAGCATAAAA flhB 3424115 - 3425248 + | flagellar biosynthesis protein FlhB TERM 3812 3426389 - 3426375 - g 77 -10 -3.74178 | overlap 3426363 3426368 3426387 GAATCAAAGGGTAAA CCGTTG AAC CAACGG CTACGCGGCGTGCGA flhA 3425235 - 3427331 + | flagellar biosynthesis protein FlhA YPA_3089 3427531 - 3427400 - | hypothetical protein YPA_3090 3427534 - 3428112 + | putative lipoprotein TERM 3813 3428138 - 3428173 + T 100 -12 -4.39426 | opp_overlap 3428135 3428134 ACGGAAGAAGAGGGA TCGCCACAGTAAGC GAGTATGA GATTACTGTGGCGA TTTTATGGCCCTGTA YPA_3091 3429199 - 3428204 - | hypothetical protein TERM 3814 3429184 - 3429174 - G 91 -3.2 -5.72616 | ATCCACAGAAAAAAA CCAC CGC GTAG GGAAAGAATATTCAT YPA_3092 3430055 - 3431134 + | iron-enterobactin transporter periplasmic binding protein TERM 3815 3431163 - 3431146 - T 71 -4.1 -4.87786 | CTAACGGCATAAAAA GCGAC ACTTATTG GTCGC TTGAGGTTATTGACA YPA_3093 3432452 - 3431346 - | fimbrial protein TERM 3816 3431998 - 3432010 + g 73 -6.3 -4.5448 | AGTTGGACCGTGACT CGATT AGC AATCG TTATTTTTGTCCCTG YPA_3094 3433196 - 3432477 - | fimbrial chaperone protein TERM 3817 3432976 - 3432998 + g 74 -4.1 -4.93316 | CGCTGAACTGGTGGC GTTGCCACT AACGG GGTGGTGAC TTTTTGCTGTTGTTC YPA_3095 3435694 - 3433214 - | outer membrane usher protein TERM 3818 3435969 - 3435945 - R 93 -9.9 -4.38927 | opp_overlap 3435948, overlap 3435947 3435948 TTTTCATAGAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3819 3435967 - 3435947 - R 100 -12.5 -3.79864 | opp_overlap 3435948, overlap 3435945 3435948 TTCATAGAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3820 3435966 - 3435948 - R 100 -16 -2.87195 | opp_overlap 3435948, overlap 3435947 3435945 TCATAGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3821 3435948 - 3435966 + r 100 -16 -4.8048 | opp_overlap 3435948 3435947 3435945 TCATAGAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_3096 3436505 - 3436047 - | transposase for the IS1541 insertion element TERM 3822 3436636 - 3436618 - H 100 -16 -3.07307 | opp_overlap 3436618 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3823 3436618 - 3436636 + H 100 -16 -4.37092 | opp_overlap 3436618 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3824 3436653 - 3436679 + H 81 -9.5 -3.8594 | opp_overlap 3436655, overlap 3436655 TTTCTGGGCACAATA AATATGGCAGC CATCT GCTGCCATATC TTTCATCTCACTATT TERM 3825 3436655 - 3436677 + H 91 -12.1 -3.51034 | opp_overlap 3436655, overlap 3436653 TCTGGGCACAATAAA TATGGCAGC CATCT GCTGCCATA TCTTTCATCTCACTA TERM 3826 3436677 - 3436655 - H 100 -12.1 -4.30719 | opp_overlap 3436655 3436653 TCTGGGCACAATAAA TATGGCAGC CATCT GCTGCCATA TCTTTCATCTCACTA TERM 3827 3437083 - 3437068 - g 73 -5.4 -4.70659 | gap 1 GTTGATATCCAAAAA CGT-GGG GTT CCCTACG CCGTTGCTATCACTG YPA_3097 3436705 - 3437127 + | hypothetical protein YPA_3098 3437179 - 3438045 + | hypothetical protein TERM 3828 3438559 - 3438545 - g 74 -10 -3.57418 | opp_overlap 3438544 3438543 GAGTTATCAAAGCAA CCCTGA GTA TCAGGG GGTTATTAATAAAAT YPA_3099 3438042 - 3438896 + | hypothetical protein YPA_3100 3438911 - 3439360 + | putative outer membrane secretin family protein TERM 3829 3440206 - 3440177 - g 100 -4.3 -5.96894 | overlap 3440179 ACCCAAATAAAAAAA TCGCCTACCTTGT TATT ACAAGGCAATCAA GGCTCGCAAGATCTC YPA_3101 3439658 - 3440785 + | hypothetical protein YPA_3102 3440797 - 3442083 + | putative type II secretion protein YPA_3103 3442080 - 3442955 + | hypothetical protein TERM 3830 3443576 - 3443553 - g 86 -8.2 -4.67563 | opp_overlap 3443552 3443550 3443553, overlap 3443567 CAATAGAAATGAAAA TGTTTTGCAG CACA CTGCAATACA GTATTAGTTTTGGCT YPA_3104 3442952 - 3443785 + | hypothetical protein TERM 3831 3443797 - 3443811 + G 80 -4.3 -5.0916 | TTAATACTATTATTA TCATC CCAGT GATGA TTTTTCTGTTAAGCG YPA_3105 3443769 - 3444539 + | hypothetical protein YPA_3106 3444536 - 3445009 + | hypothetical protein YPA_3107 3444993 - 3445565 + | hypothetical protein TERM 3832 3445614 - 3445634 + G 87 -4.8 -5.45652 | overlap 3445615 AAAACAATGATAACT TTCATACT AGAGA AGTATGAG TTTTTTATTAAAAAT YPA_3108 3445590 - 3447146 + | hypothetical protein TERM 3833 3447242 - 3447202 - T 93 -9.7 -4.32046 | opp_overlap 3447202 3447203, overlap 3447203 TCCTCAAAAACCAAA GTTGATGCAAGCGCGGTAA CAG TAACCGCGCTTGCAAAAAA TTATTTTGCGCCGCT TERM 3834 3447202 - 3447242 + T 88 -9.7 -4.17316 | opp_overlap 3447202 3447203, overlap 3447203 TCCTCAAAAACCAAA GTTGATGCAAGCGCGGTAA CAG TAACCGCGCTTGCAAAAAA TTATTTTGCGCCGCT TERM 3835 3447203 - 3447241 + T 95 -13.2 -3.09908 | opp_overlap 3447202 3447203, overlap 3447202 CCTCAAAAACCAAAG TTGATGCAAGCGCGGTAA CAG TAACCGCGCTTGCAAAAA ATTATTTTGCGCCGC TERM 3836 3447241 - 3447203 - T 95 -13.2 -3.18505 | opp_overlap 3447203 3447202, overlap 3447202 CCTCAAAAACCAAAG TTGATGCAAGCGCGGTAA CAG TAACCGCGCTTGCAAAAA ATTATTTTGCGCCGC YPA_3109 3447668 - 3447243 - | biopolymer transport protein ExbD YPA_3110 3448715 - 3447678 - | MotA/TolQ/ExbB proton channel family protein TERM 3837 3449362 - 3449338 - g 86 -5 -5.2696 | gap 1, overlap 3449340 GTAAAAGCGAAAAAA CA-TGCCACGA TCAA TCGGGGCAATG GTGAGTTGTTCTATG TERM 3838 3449359 - 3449340 - g 74 -7.8 -4.24654 | overlap 3449338 AAAAGCGAAAAAACA TGCCACGA TCAA TCGGGGCA ATGGTGAGTTGTTCT YPA_3111 3449194 - 3450405 + | cystathionine beta-lyase YPA_3112 3450598 - 3451149 + | DedA family membrane protein TERM 3839 3451314 - 3451298 - T 75 -5.8 -4.65916 | opp_overlap 3451298 TCCAGGTGAATAAAA CGGCAT CTAAT ACGCCG TTTCTATGAAGCCTT YPA_3113 3452252 - 3451359 - | AraC family transcription regulator TERM 3840 3452551 - 3452539 - H 80 -4.8 -5.17353 | ATATTGACGAAAAAA GTGC TCCAG GCAC AGTGATGTGGTTACG TERM 3841 3452743 - 3452726 - g 71 -6.9 -4.21631 | opp_overlap 3452726 3452724 AATTGACTCAAGAAA TCCCGGC GGAT GCCCGGA TATTGATTACCTACG YPA_3114 3452650 - 3453807 + | putative iron-containing alcohol dehydrogenase TERM 3842 3453800 - 3453810 + F 76 -6.8 -4.55721 | GTATCTATGAAGCGG CGGT ATA ACCG TTTTATGTAAGATTT TERM 3843 3453891 - 3453861 - f 93 -9.7 -4.2558 | opp_overlap 3453858 TATCTCGTACCAAAA CTGGCGGCATTAC CGCAT GTCATGCTGCCAG TCCTCCTGTTTATAC TERM 3844 3454181 - 3454156 - f 71 -3.4 -4.99645 | overlap 3454174 AGGTCATAAATAAAA TGATAACG ACTAAACTTA CGTTATCA GCAACGGGCTAATAC dkgA 3454226 - 3455059 + | 2,5-diketo-D-gluconate reductase A TERM 3845 3455063 - 3455093 + T 86 -7.7 -4.71061 | gap 1 TCTGACCGCTGATTT CAGGCCAGCAATAA CCCC TTAATGCT-GCCTG TTTTTCCCTCTGGAT YPA_3116 3455893 - 3455081 - | hypothetical protein YPA_3117 3457425 - 3455878 - | hypothetical protein TERM 3846 3456764 - 3456788 + g 71 -5.8 -4.36914 | CGCATCACAACGGTG TTACGGACAT CCTGA ATATCCGTAA TTTTCTCACCCGCAG TERM 3847 3457602 - 3457590 - R 78 -9.1 -3.83409 | GTACATATCAGTAAA CCTGC GAA GCAGG CAAGCGAGACATGCG TERM 3848 3457759 - 3457738 - R 72 -7.9 -3.79021 | CAAAACGTGATCAAA GCGTCGGTG CTGC CACCGTCAC TAACTGCCCCGCCGA YPA_3118 3459157 - 3457733 - | repressor protein for FtsI TERM 3849 3459024 - 3459013 - G 100 -7.2 -5.47399 | GCAAGGTTAAAAAAA GCGG TTGG CCGC GGCGAGATTCTAATA TERM 3850 3459301 - 3459291 - R 75 -8.2 -3.89695 | overlap 3459292 TGGCGATAAATATAA CCGC CGC GCGG GGCCGCGATAGCCTG YPA_3119 3460067 - 3459336 - | putative acyltransferase TERM 3851 3459632 - 3459655 + g 73 -3.2 -5.04987 | TGCGTGTGCCTTCTG GGAACATC CAAATAGA GATGTTTC TTTTTTGCACCTGTT YPA_3120 3462647 - 3460374 - | DNA topoisomerase IV subunit A TERM 3852 3461434 - 3461419 - G 74 -4.6 -4.81249 | opp_overlap 3461418 3461419 TCCGAAATGGAAAAA CGCTGC ATCA GTAGCG GTTTAGGATCATCTT TERM 3853 3461858 - 3461894 + g 90 -8 -5.00616 | gap 1, overlap 3461861 3461862 TCGCGCCGGAAACCT GATG-TGGTAACGCCGT GATC ACGGCGCTGCCATCTTC TTTTTTCCACACCGC TERM 3854 3461861 - 3461891 + g 86 -8.3 -4.61482 | gap 1, overlap 3461858 3461862 CGCCGGAAACCTGAT G-TGGTAACGCCGT GATC ACGGCGCTGCCATC TTCTTTTTTCCACAC TERM 3855 3461862 - 3461889 + g 86 -12 -3.91465 | overlap 3461861 3461858 GCCGGAAACCTGATG TGGTAACGCCGT GATC ACGGCGCTGCCA TCTTCTTTTTTCCAC TERM 3856 3462422 - 3462449 + g 84 -4.8 -5.22039 | gap 1, overlap 3462423 GCGGATGATATTTAC CCAGCACGTCACC CAC GGT-ACGGGCTGA TTTTTTGAATTTAGC TERM 3857 3462423 - 3462448 + g 70 -8.3 -3.72139 | gap 1, overlap 3462422 CGGATGATATTTACC CAGCACGTCACC CAC GGT-ACGGGCTG ATTTTTTGAATTTAG YPA_3121 3462951 - 3463535 + | putative modulator of drug activity TERM 3858 3463542 - 3463568 + T 100 -17.3 -4.4715 | AACAGCTAAGCGGTT CGGCCCTCCTC TCTCT GGGGAGGGCCG TTTTATACGTTACCC YPA_3122 3464504 - 3463593 - | LysR family regulatory protein YPA_3123 3466403 - 3464508 - | DNA topoisomerase IV subunit B TERM 3859 3465194 - 3465230 + g 90 -8 -5.00616 | opp_overlap 3465194 3465193, overlap 3465197 CCTGCGAAGTACAAT CTG-CCAGTTTGCCAGGC AGT GCCGGGCCA-CTGGTCAG TTTTTTACGCACCAC YPA_3124 3467086 - 3466505 - | esterase YqiA YPA_3125 3467607 - 3467086 - | Icc-like protein YPA_3126 3467914 - 3467501 - | regulator of lacZ YPA_3127 3468421 - 3467996 - | hypothetical protein nudF 3469087 - 3468455 - | ADP-ribose pyrophosphatase NudF TERM 3860 3470098 - 3470113 + G 74 -6.8 -4.30987 | opp_overlap 3470083 GCACTAGAGAGCTTG CGCCAG ATTA CTGGTG TTTATTATCCCGAAT tolC 3469483 - 3470880 + | outer membrane channel protein TERM 3861 3470913 - 3470947 + F 100 -10.6 -5.09895 | overlap 3470917 CGTCAGCGGTTTGGC TTCACCGGGCACAGTC ATT GGCTGCGCCCGGTTTA TTTTTTGCCTCCCTC TERM 3862 3470917 - 3470943 + F 100 -15.8 -5.0666 | overlap 3470913 AGCGGTTTGGCTTCA CCGGGCACAGTC ATT GGCTGCGCCCGG TTTATTTTTTGCCTC YPA_3130 3471181 - 3471867 + | hypothetical protein TERM 3863 3471863 - 3471842 - f 73 -7.3 -4.23723 | gap 1 CAACATCATCCAAAA CCACCACACG TAG CATG-GGTGG CTAAGGCTGATTAAT YPA_3131 3471877 - 3473037 + | hypothetical protein TERM 3864 3473075 - 3473039 - T 74 -10.3 -2.57564 | opp_overlap 3473048, overlap 3473038 3473043 3473047 TTATTTTGGGATAAT TATAGTAAGGGAAGGCA ATG CACCTTCCTTTACCATA CCCAAAGTCATTGCC YPA_3132 3474226 - 3473444 - | hypothetical protein ribB 3475338 - 3474685 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase YPA_3134 3475907 - 3476188 + | hypothetical protein TERM 3865 3476392 - 3476366 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3476375, overlap 3476367 3476382 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3866 3476393 - 3476367 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3476375, overlap 3476366 3476382 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPA_3135 3477763 - 3476513 - | inner membrane protein YjeH TERM 3867 3477706 - 3477688 - G 76 -5.2 -4.8048 | overlap 3477689 CTGGCACAGCAAAAA CCCCCGTC CCC AACAGGGA AGTGGATAACAACCC TERM 3868 3477778 - 3477795 + r 86 -12.7 -2.52464 | CTGCCACATCCTTAT GCGCCAG CGCT CTGGCGC TGACTTAGCCGCGGC YPA_3136 3479230 - 3477800 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase TERM 3869 3479040 - 3479027 - G 70 -9.5 -3.18681 | GGTCAACCCGACTAA GCGCG CAAC CGCGC CAAGGGAGGCAATAT YPA_3137 3482220 - 3479365 - | bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase TERM 3870 3479752 - 3479792 + g 82 -11.2 -3.73224 | gap 1 CCGCATTTCGCGGAC TTC-CTGCTGCAACTGCGG ATCT TCGCGGTGGCGGCAGAGAA TTTGCTGGCGAATAG YPA_3138 3483698 - 3482391 - | hypothetical protein TERM 3871 3482916 - 3482900 - G 73 -5.1 -4.64657 | overlap 3482902 3482910 CCAAACCGCCAAAAA TAGCCAA CGA TTGGCGA ACCATAGCCAAAGCG YPA_3139 3484002 - 3484625 + | putative signal transduction protein TERM 3872 3485193 - 3485215 + G 100 -12.7 -4.21275 | overlap 3485192 CCATTGCGCGTTCTG CGGGTGGCA CGCTT TGCCGCCCG TTTTGCCTACCTTGG cca 3484785 - 3486023 + | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase TERM 3873 3486042 - 3486060 + T 75 -8.8 -3.58343 | opp_overlap 3486057 ACTCCCTGTTCGTTT CCCCCTGT AAA ACAAGGGG TTTCAGACTCCTGCC YPA_3141 3487077 - 3486259 - | undecaprenyl pyrophosphate phosphatase TERM 3874 3487141 - 3487119 - R 100 -8.4 -5.77632 | opp_overlap 3487119 AAAACCACAAAAAAA CGGCAATGCT GAA AACAGTGCCG TTCTATTTAGAATTT folB 3487710 - 3487351 - | bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YPA_3143 3487818 - 3488468 + | putative glycerol-3-phosphate acyltransferase PlsY TERM 3875 3488520 - 3488481 - T 100 -12.1 -4.07885 | overlap 3488488 3488504 TAGTTTTCCCCAAAA CCGAGAATGGCTGCGGC AACACA GCCACAGCCACGCCCAG CCATTCGACACCCAT TERM 3876 3488513 - 3488488 - T 100 -12.6 -3.52113 | overlap 3488481 3488504 CCCCAAAACCGAGAA TGGCTGCGGC AACACA GCCACAGCCA CGCCCAGCCATTCGA TERM 3877 3488562 - 3488504 - T 79 -11.1 -3.06696 | gap 1, overlap 3488488 3488481 GGCTGCGGCAACACA GCCACAGCCACGCCCAGCCATTC-GACA CCCA TATCAGAATGACTGAGCATGAGCGAGGC AAGGCGCAAAGGAAT TERM 3878 3488607 - 3488585 - T 76 -2.7 -5.33921 | gap 1, opp_overlap 3488585, overlap 3488587 3488589 AAAGGAATGAAAAAA CGCAGTGGAC TCTT GTCCA-TGAG TATTTTGAATGACTG TERM 3879 3488639 - 3488620 - T 76 -10.7 -2.72661 | overlap 3488633 GAGTATTTTGAATGA CTGCGGC AACACA GCCGCAG CCACGCTCAGCCATT TERM 3880 3488697 - 3488672 - T 100 -12.6 -3.47841 | overlap 3488688 ACACCCATATCAGAA TGACTGCGGC AACGCA GCCGCAGCCA CGCTCAGCCATTCTG TERM 3881 3488752 - 3488738 - T 76 -9.2 -3.551 | TGGTAACTCAGATAA CGGCCA CCG CGGCCG CACCGACACACTCAA YPA_3144 3489727 - 3488714 - | O-sialoglycoprotein endopeptidase rpsU 3490133 - 3490348 + | 30S ribosomal protein S21 TERM 3882 3490449 - 3490422 - f 76 -11.2 -2.55668 | opp_overlap 3490422, overlap 3490421 TAGTTGCATACGAAG GCCGTGCTTTCC GAAA GGAATGCGCGGC TTGTTCTCGTTTATG TERM 3883 3490422 - 3490449 + F 100 -13.4 -3.94823 | opp_overlap 3490422 3490421 TAGTTGCATACGAAG GCCGTGCTTTCC GAAA GGAATGCGCGGC TTGTTCTCGTTTATG TERM 3884 3492074 - 3492084 + G 74 -6.8 -4.37092 | overlap 3492072 ATTGTAGAGGATATG GTCG AAC CGAC TTTTGTCGACACGCT dnaG 3490484 - 3492232 + | DNA primase TERM 3885 3492280 - 3492261 - f 81 -9.3 -3.87869 | TTAATTGCCGATAAA TGTGGGG GCAACT CCCCACA ATATGCCGCTATAGC TERM 3886 3493125 - 3493100 - g 80 -3.1 -5.24551 | overlap 3493101 GGAAATCAAGAAAAA TGGCCGCAATC ACGC GAATGCTGCCG CTGAAATTCTGAAGC YPA_3147 3492390 - 3494228 + | RNA polymerase sigma factor RpoD TERM 3887 3494275 - 3494251 - T 78 -4.2 -5.1963 | opp_overlap 3494251, overlap 3494241 GTGAAGTAATAAAAA TCCCGGCATA TTATT TGTGTCGGGA TTTTTTTTCCTATAA TERM 3888 3494251 - 3494275 + T 100 -8.6 -5.90981 | opp_overlap 3494251 3494241 GTGAAGTAATAAAAA TCCCGGCATA TTATT TGTGTCGGGA TTTTTTTTCCTATAA TERM 3889 3494538 - 3494508 - T 100 -9.8 -4.93877 | opp_overlap 3494511, overlap 3494511 GGCCACCAAATAAAA CAAGGAGTTACGTT AAT AGCGTAACTCCTTT GTTATTTCTGGGATA TERM 3890 3494535 - 3494511 - T 100 -11.5 -4.56436 | opp_overlap 3494511, overlap 3494508 CACCAAATAAAACAA GGAGTTACGTT AAT AGCGTAACTCC TTTGTTATTTCTGGG TERM 3891 3494511 - 3494535 + T 100 -13.7 -4.63048 | opp_overlap 3494511 3494508 CACCAAATAAAACAA GGAGTTACGTT AAT AGCGTAACTCC TTTGTTATTTCTGGG YPA_3148 3494667 - 3494515 - | hypothetical protein YPA_3149 3495084 - 3494746 - | hypothetical protein YPA_3150 3495352 - 3495062 - | hypothetical protein YPA_3151 3495824 - 3495369 - | hypothetical protein YPA_3152 3496321 - 3495851 - | hypothetical protein YPA_3153 3497712 - 3496330 - | hypothetical protein YPA_3154 3499114 - 3498335 - | transposase/IS protein TERM 3892 3499033 - 3499047 + g 77 -11.4 -3.3506 | overlap 3499046 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3155 3500136 - 3499114 - | transposase for insertion sequence IS100 TERM 3893 3500158 - 3500140 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 3894 3500705 - 3500690 - g 74 -4 -5.00616 | TTTCTGTGCAAAAAA TTGAGC AGCA ACTCAA ACAAAATCTGGCACA YPA_3156 3500590 - 3500748 + | hypothetical protein YPA_3157 3501119 - 3500745 - | hypothetical protein YPA_3158 3501256 - 3501053 - | hypothetical protein YPA_3159 3502639 - 3501707 - | LysR family regulatory protein YPA_3160 3502801 - 3503517 + | hypothetical protein YPA_3161 3503777 - 3504079 + | hypothetical protein YPA_3162 3504698 - 3504294 - | putative translational inhibitor protein TERM 3895 3504425 - 3504400 - G 78 -6.1 -4.82901 | GCGCCCTCATAAAAA GCCCCGATTTG TGCG CAAATTGCGGC CAAATTCGCCGGTGA TERM 3896 3504662 - 3504646 - G 73 -2.9 -4.91511 | ACCGCATGAGAAAAA CCGAATG GCA CACTGGG GTACATCGTCTCGGG YPA_3163 3505363 - 3504983 - | putative translational inhibitor protein YPA_3164 3506005 - 3505379 - | hypothetical protein TERM 3897 3505794 - 3505804 + gH 72 -4 -4.7497 | ATGATAAAATCACGT TCTT CCC AAGA TTTTTCATGGATAAG YPA_3165 3506005 - 3506142 + | hypothetical protein YPA_3166 3506585 - 3506139 - | hypothetical protein YPA_3167 3508040 - 3506589 - | hypothetical protein TERM 3898 3507990 - 3507980 - G 78 -2.4 -5.25699 | opp_overlap 3507987 3507988 ACGACACAATAAAAA GCAG CAT CGGC AGTAATGCCATATTT YPA_3168 3509265 - 3508033 - | putative aminotransferase TERM 3899 3509174 - 3509190 + g 80 -2.2 -5.44721 | opp_overlap 3509174 ATGAGATCCAATACA GCGG TACCAACAT CCGC TTTTTTTACACTGCT YPA_3169 3510031 - 3510231 + | hypothetical protein TERM 3900 3510323 - 3510294 - g 71 -6.3 -4.39287 | opp_overlap 3510294 TTAACGACAGCAAAA CAGGCGCTATGGC GTGG GCCATTGATCCTG TTATCGGCTATAGCG YPA_3170 3510228 - 3510563 + | hypothetical protein YPA_3171 3510573 - 3511622 + | multidrug resistance protein MdtN YPA_3172 3511606 - 3513507 + | hypothetical protein YPA_3173 3513512 - 3515038 + | hypothetical protein YPA_3174 3517285 - 3515102 - | putative glycosyl hydrolase TERM 3901 3515964 - 3515986 + g 70 -9.9 -3.18383 | gap 1 GTGATCACCTTAACC TCCC-CTGCG ATAG CGCAGAGGGA TTGATAGATCGACAT TERM 3902 3516565 - 3516552 - G 70 -4.5 -4.70879 | overlap 3516553 CCGAAATCGCAAAAA CCGGT CATC ACCGA GCCAACGCCTGCCTC YPA_3175 3517851 - 3517336 - | hypothetical protein TERM 3903 3517491 - 3517475 - G 77 -12.3 -3.10164 | opp_overlap 3517474 3517476 CGAGCCAGCAGGCAA GTTGCCG CTT CGGCAAC GAAGCGGGTATCAAT YPA_3176 3518666 - 3517848 - | putative permease TERM 3904 3518148 - 3518135 - G 80 -2.3 -5.42259 | overlap 3518120 3518136 CCACCTTGAAAAAAA TGGTG AATT CACCT GCGCCATCGATCCTG YPA_3177 3519547 - 3518666 - | putative permease protein YPA_3178 3520845 - 3519601 - | putative sugar binding protein TERM 3905 3519659 - 3519672 + g 70 -8.1 -3.66095 | GCAACCGCTTGTTCC GGGGA TATT TCCCC TTTCAGTACCACTTT YPA_3179 3521908 - 3520922 - | LacI-family regulatory protein TERM 3906 3521944 - 3521960 + r 72 -6.5 -4.36914 | opp_overlap 3521944 AAGGAATTTACTATA GCATGAG CCA CTCAGGC TTTTGTAGCGCCACA YPA_3180 3525370 - 3522017 - | hypothetical protein TERM 3907 3524654 - 3524621 - G 76 -8.1 -4.26792 | overlap 3524614 3524623 ATAGAAACCGTAAAA TACGCTGTCTGCG CTGTCACC CGCGGACAGCGTG ACTGGCTGTAGCTGT TERM 3908 3524652 - 3524623 - G 80 -10.7 -3.72407 | overlap 3524614 3524621 AGAAACCGTAAAATA CGCTGTCTGCG CTGTCACC CGCGGACAGCG TGACTGGCTGTAGCT YPA_3181 3526556 - 3525453 - | putative transporter ATP-binding protein TERM 3909 3526448 - 3526424 - G 71 -11.5 -2.79023 | opp_overlap 3526428, overlap 3526421 CAAGGCCAGCAATCA TGCGCAACATC GTT GATTTTGCGCA GCCAGAGGGGCCAAC TERM 3910 3527532 - 3527520 - g 82 -4.1 -5.24129 | TTGGTCGACAAAAAA CAATG CGT CACTG GGCTACTTCGTTGAT YPA_3182 3526894 - 3528273 + | hypothetical protein YPA_3183 3528375 - 3529370 + | hypothetical protein YPA_3184 3529430 - 3531715 + | putative autotransporter protein YPA_3185 3532147 - 3531983 - | hypothetical protein YPA_3186 3532966 - 3532211 - | putative hemagglutinin/hemolysin YPA_3187 3533430 - 3532999 - | hypothetical protein YPA_3188 3533738 - 3533511 - | hypothetical protein YPA_3189 3533942 - 3533793 - | hypothetical protein YPA_3190 3544121 - 3534234 - | putative adhesin TERM 3911 3534982 - 3534964 - G 74 -9.5 -3.55444 | opp_overlap 3534970 CTGTCACCTGTCAAA CCACCGG CCAGC CCGGCGG CTAATGTACTCAGTG TERM 3912 3537274 - 3537290 + g 78 -3.6 -5.14965 | overlap 3537273 3537276 TCGCTGCGGGTGGTG GTGCTG GAGAG CAGCCC TTTTTTAGTCCCGGT TERM 3913 3538848 - 3538878 + g 80 -9.6 -4.07133 | GCTGTCGCGATCACG TGGGGCGACAATCG CGC CGGGTGCTGCCCCA TTGTTTATCACCGTA TERM 3914 3539304 - 3539319 + g 79 -8.2 -4.4009 | TTGAGTATAACGCCC CCCCGG AATA TCGGGG TTTTCTGCCGTCCAG TERM 3915 3539604 - 3539619 + g 70 -2.4 -4.91712 | overlap 3539597 3539606 AATTACCGGTGCCAA CAGCGC TAGT GTGCCG TTTTTATCCGTTGCA TERM 3916 3542849 - 3542876 + g 75 -9 -3.83205 | overlap 3542850 TGCCGCTAATATTTT TCCCTTGGGCGG TTAG CTGCCCACGGGC TTTAATATCAAGGGT TERM 3917 3542850 - 3542875 + g 78 -12.5 -2.89602 | overlap 3542849 GCCGCTAATATTTTT CCCTTGGGCGG TTAG CTGCCCACGGG CTTTAATATCAAGGG YPA_3191 3545854 - 3544166 - | putative hemolysin activator protein TERM 3918 3545417 - 3545429 + g 73 -9.1 -3.6959 | overlap 3545413 CACGACGTTTAGCGC CAGCG TGC CGCTG TTTAAATCCTGCTGT TERM 3919 3545676 - 3545666 - G 70 -2.4 -5.04987 | overlap 3545655 3545667 AATACGGCTAAAAAA GGCC GAG GGCG CAGATAAGCGCACAT YPA_3192 3546569 - 3547207 + | putative tellurium resistance protein YPA_3193 3547240 - 3547881 + | putative tellurium resistance protein YPA_3194 3547820 - 3548521 + | hypothetical protein TERM 3920 3548525 - 3548559 + F 100 -8.6 -5.626 | opp_overlap 3548528, overlap 3548528 TTGGTACTGTAATGT AAAGGCAAAGCCCC CATTCAC GGCGCTTTGCCTTA TTTTTTTGTCGCATC TERM 3921 3548528 - 3548556 + F 100 -10.3 -4.89054 | opp_overlap 3548528, overlap 3548525 GTACTGTAATGTAAA GGCAAAGCCCC CATTCAC GGCGCTTTGCC TTATTTTTTTGTCGC TERM 3922 3548556 - 3548528 - f 86 -10.3 -3.76125 | opp_overlap 3548528 3548525 GTACTGTAATGTAAA GGCAAAGCCCC CATTCAC GGCGCTTTGCC TTATTTTTTTGTCGC YPA_3195 3548623 - 3549606 + | hypothetical protein YPA_3196 3549662 - 3551395 + | hypothetical protein TERM 3923 3551471 - 3551457 - g 73 -6.4 -4.4648 | ACCTGTACGACAAAA GATGGC GAA ACCATC CAGTACGTTGACGAG YPA_3197 3551427 - 3552926 + | putative kinase protein YPA_3198 3553317 - 3553886 + | acid-resistance membrane protein TERM 3924 3554057 - 3554016 - f 82 -3 -5.4756 | gap 2 AATTTGAATAAAAAA TCTCATCCGACCACTTGCTG GATT CAGTAAG-GG-CGGCGGAGA TATAACAATAATGGT TERM 3925 3555085 - 3555071 - g 70 -2.7 -4.82901 | overlap 3555072 GCTTTTGTACAAAAA GCGGC ACAGG GCCGG GCCGATGAAATTAAC YPA_3199 3554099 - 3556120 + | 2,4-dienoyl-CoA reductase TERM 3926 3556227 - 3556196 - T 100 -15.2 -3.85879 | overlap 3556186 TAGAACTGAGAATAA TCACAGGGTGTGGC GAAA ACCCCACCCTGTGA AATACCGATTAGAAA YPA_3200 3557423 - 3556236 - | putative methyltransferase TERM 3927 3557528 - 3557510 - H 100 -14.6 -3.54459 | opp_overlap 3557499 3557498 TTAATGCGTTTTAAA CGCGCTTG TGC CAAGCGCG AACCCACACCGCAAG TERM 3928 3558418 - 3558400 - g 72 -3.8 -4.8543 | opp_overlap 3558400 GAAGTGCCACAAAAA CCACTGTC GGT GATAATGG TATTCTCTATGTTTC TERM 3929 3558947 - 3558929 - g 70 -9 -3.55378 | overlap 3558927 ATTTATCGATAAACA TAGCATAT GGA ATATGCTA GGCGATTCTAACATC YPA_3201 3557892 - 3560876 + | putative autotransporter protein TERM 3930 3560920 - 3560892 - f 100 -11.7 -4.431 | TATCCATTGATAAAA CGATACCTGTGCC TAT GGTGCAGGTATCG ACAGACCGCTAATCC YPA_3202 3561115 - 3561624 + | hypothetical protein YPA_3203 3561827 - 3562822 + | MocA family oxidoreductase TERM 3931 3562942 - 3562963 + F 70 -3.7 -4.85653 | gap 1, opp_overlap 3562931, overlap 3562942 3562943 ACTACAATCTATCGA T-CGGGGCTA CCA TAGCCCCACA TTTATTTTGTATATA TERM 3932 3563178 - 3563153 - f 76 -6.9 -4.44667 | gap 1 GGTGTGAACAATAAA CGCTCA-GCC TCGTTCC GGCTTGAGCG CTATACCCAAAGTCA YPA_3204 3563294 - 3564613 + | serine/threonine transporter SstT TERM 3933 3564638 - 3564663 + F 100 -9.8 -5.60993 | opp_overlap 3564638 TTTACCTACGCAAAA TGCCAGTCAG TTAAGT TTGACTGGCA TTTTTTTGTGCCCAG TERM 3934 3564663 - 3564638 - f 83 -9.1 -4.19817 | opp_overlap 3564638 TTTACCTACGCAAAA TGCCAGTCA GTTAAGTT TGACTGGCA TTTTTTTGTGCCCAG TERM 3935 3564683 - 3564701 + F 100 -16 -3.07307 | opp_overlap 3564683 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3936 3564701 - 3564683 - f 100 -16 -4.36914 | opp_overlap 3564683 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3205 3564814 - 3565272 + | transposase for the IS1541 insertion element TERM 3937 3565350 - 3565374 + T 100 -9.9 -4.51812 | opp_overlap 3565353, overlap 3565352 3565353 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTTATCAAA TERM 3938 3565352 - 3565372 + T 100 -12.5 -3.86244 | opp_overlap 3565353, overlap 3565350 3565353 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTTATCA TERM 3939 3565371 - 3565353 - T 100 -16 -4.8048 | opp_overlap 3565353 3565352 3565350 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTATC TERM 3940 3565353 - 3565371 + T 100 -16 -2.90662 | opp_overlap 3565353, overlap 3565352 3565350 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTATC YPA_3206 3565920 - 3565390 - | hypothetical protein TERM 3941 3566023 - 3565982 - R 75 -8.7 -3.63559 | gap 1, opp_overlap 3565983, overlap 3565980 3565983 ATTAATAAGCAAACA GCGCACTCCCCCTACA-GCT TAA AGTGTGAAGGGGAAGTGCGT TTCCATAAAAAACAG TERM 3942 3566022 - 3565983 - R 83 -12.2 -2.77051 | gap 1, opp_overlap 3565983, overlap 3565982 3565980 TTAATAAGCAAACAG CGCACTCCCCCTACA-GCT TAA AGTGTGAAGGGGAAGTGCG TTTCCATAAAAAACA TERM 3943 3565983 - 3566022 + r 93 -12.2 -3.64703 | gap 1, opp_overlap 3565983 3565982 3565980 TTAATAAGCAAACAG CGCACTCCCCCTACA-GCT TAA AGTGTGAAGGGGAAGTGCG TTTCCATAAAAAACA YPA_3207 3567563 - 3566073 - | altronate hydrolase YPA_3208 3568677 - 3567574 - | altronate oxidoreductase TERM 3944 3568038 - 3568067 + g 73 -2.9 -5.00616 | gap 1 CGTCTTCGGGCAGAT CCAATACCGGAACA ATC TCTTCCG-TAATGG TTTTTTCCACAAAGC YPA_3209 3569025 - 3568723 - | tagaturonate reductase YPA_3210 3570633 - 3569224 - | glucuronate isomerase YPA_3211 3571378 - 3572682 + | ExuT transport protein TERM 3945 3572766 - 3572733 - f 79 -11.1 -3.2115 | opp_overlap 3572735 3572740, overlap 3572735 3572740 TAAATGACCTACTAA CATGAAAGCCCGGTA AATT TATCGGGCTTTCATC TCTCCTGTTATCCGC TERM 3946 3572735 - 3572764 + F 100 -15.9 -3.02381 | opp_overlap 3572733 3572735 3572740, overlap 3572740 AATGACCTACTAACA TGAAAGCCCGGTA AATT TATCGGGCTTTCA TCTCTCCTGTTATCC TERM 3947 3572764 - 3572735 - f 100 -13.7 -3.16264 | opp_overlap 3572735 3572740, overlap 3572733 3572740 AATGACCTACTAACA TGAAAGCCCGGTA AATT TATCGGGCTTTCA TCTCTCCTGTTATCC TERM 3948 3572740 - 3572759 + F 84 -10 -3.90358 | opp_overlap 3572735 3572733 3572740, overlap 3572735 CCTACTAACATGAAA GCCCGGTA AATT TATCGGGC TTTCATCTCTCCTGT TERM 3949 3572759 - 3572740 - f 74 -7.8 -3.95022 | opp_overlap 3572740 3572735, overlap 3572735 3572733 CCTACTAACATGAAA GCCCGGTA AATT TATCGGGC TTTCATCTCTCCTGT TERM 3950 3573366 - 3573329 - g 70 -2.8 -4.81851 | gap 2, opp_overlap 3573359, overlap 3573331 ATTGAAATTCAAAAA CA-TGCGCGTCA-GGAAG ATCG CTTCCGTGACTCTCAATG GGATCTTAAATTCCA YPA_3212 3572945 - 3573739 + | DNA-binding transcriptional repressor ExuR YPA_3213 3573940 - 3574521 + | putative lipoprotein YPA_3214 3574799 - 3575497 + | DedA family membrane protein YPA_3215 3575494 - 3575883 + | hypothetical protein TERM 3951 3575915 - 3575888 - f 91 -12 -3.4759 | overlap 3575889 ACTTAGGATAATCAA CGCTACGGGGAG TCGA CTCCCCGTATCA AACTCGTTCCTCTCA TERM 3952 3575914 - 3575889 - f 93 -13.3 -2.68072 | overlap 3575888 CTTAGGATAATCAAC GCTACGGGGAG TCGA CTCCCCGTATC AAACTCGTTCCTCTC YPA_3216 3576109 - 3576489 + | hypothetical protein YPA_3217 3576493 - 3576639 + | hypothetical protein YPA_3218 3576644 - 3576949 + | hypothetical protein YPA_3219 3576952 - 3577347 + | hypothetical protein YPA_3220 3577344 - 3577628 + | hypothetical protein YPA_3221 3577932 - 3578327 + | hypothetical protein TERM 3953 3578371 - 3578393 + F 100 -8.5 -5.40072 | opp_overlap 3578362 AGTTAATATCAGCGA TACCCTATC CATCC GGTAGGGTA TTTTTTTAAGGGGGA YPA_3222 3578413 - 3578592 + | hypothetical protein TERM 3954 3578584 - 3578602 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3223 3578606 - 3579628 + | transposase for insertion sequence IS100 TERM 3955 3579709 - 3579695 - g 77 -11.4 -3.3506 | overlap 3579686 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3224 3579628 - 3580407 + | transposase/IS protein YPA_3225 3580519 - 3581004 + | hypothetical protein aroE 3581880 - 3581059 - | shikimate 5-dehydrogenase YPA_3227 3582461 - 3581889 - | putative ribosome maturation factor TERM 3956 3581964 - 3581947 - G 73 -9.1 -3.67792 | overlap 3581957 TCAGATGGATTCAAA CGGCCAC CAAC GTGACCG GATAACACCGGTAAT YPA_3228 3583023 - 3582463 - | putative DNA-binding protein YPA_3229 3583516 - 3583043 - | hypothetical protein YPA_3230 3584609 - 3583488 - | hypothetical protein TERM 3957 3583934 - 3583912 - GH 72 -7.1 -3.91084 | gap 1, overlap 3583914 CGAGCGGTAATCAAA GA-GCCACTT TTTA AAGTGGCCTC AACGACTAACACAGC TERM 3958 3583931 - 3583914 - GH 78 -9.9 -3.54414 | overlap 3583912 AGCGGTAATCAAAGA GCCACTT TTTA AAGTGGC CTCAACGACTAACAC def 3584744 - 3585256 + | peptide deformylase TERM 3959 3585326 - 3585350 + G 89 -15 -3.17622 | overlap 3585330 GGAACTCCTGATTTT GCAGCGCGCC ATTTA GGCGCGTTGC TCTCTTCTCAACATA TERM 3960 3585330 - 3585346 + G 75 -10.8 -3.40191 | overlap 3585326 CTCCTGATTTTGCAG CGCGCC ATTTA GGCGCG TTGCTCTCTTCTCAA TERM 3961 3585760 - 3585744 - g 79 -8.1 -4.37886 | CTATGCTGCATAAAA TTGAATG TGC CATTCAA CCAGAAGATACCAGT fmt 3585281 - 3586228 + | methionyl-tRNA formyltransferase TERM 3962 3586296 - 3586311 + F 89 -6.8 -5.32944 | CTTCTCCCTTTATTT GCTGGC GTTT GTCAGC TTTTTTGGTTATGAA TERM 3963 3587574 - 3587554 - g 76 -5.3 -4.86731 | opp_overlap 3587549 GCCTGGTAAACAAAA CCTTCCACA TCC TGAGGACGG TGATGGTTTCTTCTA YPA_3233 3586322 - 3587611 + | 16S rRNA methyltransferase B TERM 3964 3588662 - 3588642 - g 74 -3.9 -5.00884 | ATGGGTGCGAAAAAA GCGATGG TACTTAT CCAACGC AGTGCTTACGTCGAT trkA 3587667 - 3589043 + | potassium transporter peripheral membrane component TERM 3965 3589418 - 3589432 + G 74 -3.6 -4.95547 | TTATGGTACATTTAT TCAAAG CAT TTTTGA TTTTGTTATTGTAGC mscL 3589182 - 3589595 + | large-conductance mechanosensitive channel TERM 3966 3589753 - 3589708 - T 100 -17.1 -2.90615 | opp_overlap 3589706 3589745, overlap 3589711 ATTTCTTTTAAATCA GAAGGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCCTCC CAGTTACTACCTTTT TERM 3967 3589750 - 3589711 - T 100 -15.2 -3.60151 | opp_overlap 3589706 3589745, overlap 3589708 TCTTTTAAATCAGAA GGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCC TCCCAGTTACTACCT YPA_3236 3589905 - 3589705 - | hypothetical protein zntR 3590418 - 3589993 - | zinc-responsive transcriptional regulator TERM 3968 3590819 - 3590856 + r 100 -20.1 -3.62032 | opp_overlap 3590831, overlap 3590820 3590831 AAGCTGTATATGGTG GGCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGCG TTTACAGATTACTCT TERM 3969 3590820 - 3590855 + r 100 -23.6 -2.76737 | opp_overlap 3590831, overlap 3590819 3590831 AGCTGTATATGGTGG GCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGC GTTTACAGATTACTC TERM 3970 3590831 - 3590844 + r 100 -9.5 -5.4477 | opp_overlap 3590831, overlap 3590820 3590819 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT TERM 3971 3590844 - 3590831 - R 100 -9.5 -5.40072 | opp_overlap 3590820 3590819 3590831 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT rplQ 3591254 - 3590865 - | 50S ribosomal protein L17 TERM 3972 3590983 - 3591009 + g 71 -11.4 -2.73123 | opp_overlap 3590967 3590980 CGAGTGTAACCACCG GCGCGGCTCGCG AAA CGCGGGCCTAGC TCGTTAAACAGTTTT TERM 3973 3591205 - 3591177 - G 77 -10.4 -3.57246 | gap 1, overlap 3591175 3591195 ATGACGAACCAAAGA GCC-GGCCATGTT ACGG AACATAGCCTGGC GATGGCTGCTGTTAC YPA_3239 3592284 - 3591295 - | DNA-directed RNA polymerase subunit alpha TERM 3974 3591378 - 3591390 + g 73 -3.4 -5.01732 | CGAGCACGTCTTTAA TCTC AGTAA GAGA TTTTTTACCCAGGTT TERM 3975 3592325 - 3592307 - R 77 -10.4 -3.14132 | TCTCTTTGGTACTAA GCTTTACT TGG AGTAAAGC TCGACGATCAGGTGT rpsD 3592930 - 3592310 - | 30S ribosomal protein S4 TERM 3976 3592971 - 3592955 - R 82 -7.9 -4.42851 | opp_overlap 3592954 3592955 CCAACAAACCTAAAA GCAGCGT TAT ACGCGGC GCTTTTTCGGCGGAC YPA_3241 3593350 - 3592961 - | 30S ribosomal protein S11 rpsM 3593723 - 3593367 - | 30S ribosomal protein S13 TERM 3977 3593840 - 3593811 - R 100 -12.3 -4.61868 | gap 1 CAGTCACATACAAAA GATTG-GCTGGCTA ATC TAGCCAGCTCAACC CAACTTTGCAAGAAA secY 3595352 - 3594021 - | preprotein translocase subunit SecY TERM 3978 3594918 - 3594889 - G 79 -7.9 -4.45168 | overlap 3594913 GCGGTAAAATAGAAA GCAAAGCCTGG ATTGATTA CCAGACCTTGC ATCCCAGGCATATTC rplO 3595794 - 3595360 - | 50S ribosomal protein L15 rpmD 3595977 - 3595798 - | 50S ribosomal protein L30 rpsE 3596483 - 3595980 - | 30S ribosomal protein S5 TERM 3979 3596277 - 3596297 + g 70 -4.6 -4.67353 | opp_overlap 3596275, overlap 3596275 AACGTTAATCATAGC GCGACGGG CTTTT TCCATCGC TTTTTGGATCGCTGC rplR 3596851 - 3596498 - | 50S ribosomal protein L18 rplF 3597394 - 3596861 - | 50S ribosomal protein L6 rpsH 3597801 - 3597409 - | 30S ribosomal protein S8 rpsN 3598140 - 3597835 - | 30S ribosomal protein S14 TERM 3980 3598098 - 3598119 + g 77 -8.7 -4.02021 | overlap 3598099 3598101 ATTTGTTAGCTAGTT TCACGCGAA CAAC TTCGCGTGC TTTCATTGATTGCTT TERM 3981 3598099 - 3598118 + g 76 -12.2 -3.00128 | overlap 3598098 3598101 TTTGTTAGCTAGTTT CACGCGAA CAAC TTCGCGTG CTTTCATTGATTGCT rplE 3598693 - 3598154 - | 50S ribosomal protein L5 TERM 3982 3598531 - 3598549 + g 76 -7.4 -4.30987 | opp_overlap 3598530, overlap 3598516 TTGCTGCCAAGTCAG CTGCTGCA TTA TCCAGCAG TTTCTTGTCAGCGAT rplX 3599022 - 3598708 - | 50S ribosomal protein L24 rplN 3599404 - 3599033 - | 50S ribosomal protein L14 TERM 3983 3599561 - 3599535 - R 100 -10.2 -5.24531 | opp_overlap 3599535 3599538 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG TERM 3984 3599535 - 3599561 + r 70 -8 -3.69069 | opp_overlap 3599535, overlap 3599538 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG rpsQ 3599839 - 3599585 - | 30S ribosomal protein S17 YPA_3255 3600030 - 3599839 - | 50S ribosomal protein L29 rplP 3600440 - 3600030 - | 50S ribosomal protein L16 rpsC 3601151 - 3600453 - | 30S ribosomal protein S3 TERM 3985 3601005 - 3601037 + g 74 -10 -3.61654 | overlap 3601006 GCGAGAAACGGAAGC TTTCGCTAATTCCT TAGTC AGGAATTGGCGAAC TTTAAAGTCGCTGTC TERM 3986 3601006 - 3601036 + g 79 -13.5 -2.76671 | overlap 3601005 CGAGAAACGGAAGCT TTCGCTAATTCCT TAGTC AGGAATTGGCGAA CTTTAAAGTCGCTGT rplV 3601501 - 3601169 - | 50S ribosomal protein L22 rpsS 3601794 - 3601516 - | 30S ribosomal protein S19 rplB 3602633 - 3601809 - | 50S ribosomal protein L2 TERM 3987 3602668 - 3602688 + r 80 -9.7 -3.57462 | opp_overlap 3602671, overlap 3602671 CTCTGCGCCGCCGAT GAAGTCCAG ATT CTGGCCTTC TTTCAGGGTGACGTA rplW 3602952 - 3602650 - | 50S ribosomal protein L23 rplD 3603554 - 3602949 - | 50S ribosomal protein L4 TERM 3988 3603522 - 3603534 + g 77 -10.5 -3.54414 | opp_overlap 3603517, overlap 3603521 TTCGGAAACAGTCAG CGCGC CTG GCGCG TCTTTCATTACCAAT rplC 3604200 - 3603571 - | 50S ribosomal protein L3 YPA_3264 3604544 - 3604233 - | 30S ribosomal protein S10 YPA_3265 3605431 - 3604958 - | bacterioferritin, iron storage and detoxification protein TERM 3989 3605814 - 3605790 - H 93 -9.9 -4.25056 | opp_overlap 3605793, overlap 3605792 3605793 CACTTTATCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3990 3605812 - 3605792 - H 100 -12.5 -3.72374 | opp_overlap 3605793, overlap 3605790 3605793 CTTTATCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3991 3605811 - 3605793 - H 100 -16 -2.82942 | opp_overlap 3605793, overlap 3605792 3605790 TTTATCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3992 3605793 - 3605811 + H 100 -16 -4.8048 | opp_overlap 3605793 3605792 3605790 TTTATCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3993 3605907 - 3605925 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3266 3605929 - 3606951 + | transposase for insertion sequence IS100 TERM 3994 3607032 - 3607018 - g 77 -11.4 -3.3506 | overlap 3607009 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3267 3606951 - 3607730 + | transposase/IS protein YPA_3268 3608309 - 3607851 - | transposase for the IS1541 insertion element TERM 3995 3608440 - 3608422 - R 100 -16 -3.07307 | opp_overlap 3608422 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3996 3608422 - 3608440 + r 100 -16 -4.37092 | opp_overlap 3608422 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3997 3608462 - 3608477 + r 91 -10.4 -4.10953 | opp_overlap 3608462 GGGCACAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT TERM 3998 3608477 - 3608462 - R 100 -10.4 -5.55769 | opp_overlap 3608462 GGGCACAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT YPA_3269 3609696 - 3608512 - | elongation factor Tu TERM 3999 3609712 - 3609746 + r 72 -9.3 -3.10579 | overlap 3609709 GACTATATTCCTTAC TCTTGTGCTCTCCCA CTAAA TGAGAGAGCACTGGA TCATTGTTTTAAACC YPA_3270 3611877 - 3609769 - | elongation factor G YPA_3271 3612441 - 3611971 - | 30S ribosomal protein S7 rpsL 3612912 - 3612538 - | 30S ribosomal protein S12 YPA_3273 3613337 - 3613050 - | tRNA 2-thiouridine synthesizing protein B YPA_3274 3613722 - 3613357 - | hypothetical protein TERM 4000 3613539 - 3613550 + g 80 -3 -5.30686 | overlap 3613544 AAGTAGCAATATAGT TTCT GGCA AGAA TTTTTTCTGGCTGTT YPA_3275 3614117 - 3613722 - | hypothetical protein YPA_3276 3614839 - 3614117 - | putative DNA-binding protein TERM 4001 3615062 - 3615039 - R 100 -9.6 -6.22802 | opp_overlap 3615039 GCGCACAAAAAAAAA CCGTCACGAC AATT ATCGTAACGG TTATGAGAAGAGTAT YPA_3277 3615893 - 3615093 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4002 3615255 - 3615269 + g 83 -2.8 -5.41359 | opp_overlap 3615255, overlap 3615240 TGGCGGGATAACCAA GGTG ATTTTGC CACC TTTTTTGATTTGCTT YPA_3278 3616208 - 3616426 + | hypothetical protein TERM 4003 3616631 - 3616599 - T 100 -16.5 -2.87931 | opp_overlap 3616606 3616630, overlap 3616606 GTGATCGCGTACAGA GCAAAAAGCCAGC GATGAAG GCTGGCTTTTTGC TGACGGGGTCAGATA TERM 4004 3616624 - 3616606 - T 85 -7.4 -4.84527 | opp_overlap 3616606, overlap 3616599 CGTACAGAGCAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG TERM 4005 3616606 - 3616624 + T 81 -7.4 -4.72272 | opp_overlap 3616606 3616599 CGTACAGAGCAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG YPA_3279 3617234 - 3616647 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4006 3617208 - 3617219 + g 74 -4.4 -4.85545 | CTGGTAAGCCAGGCT GACT ACCA AGTC TTTTGTTACTTTCAT YPA_3280 3617550 - 3617329 - | hypothetical protein YPA_3281 3619374 - 3617566 - | glutathione-regulated potassium-efflux system protein KefB YPA_3282 3619926 - 3619378 - | glutathione-regulated potassium-efflux system ancillary protein KefG TERM 4007 3620507 - 3620491 - gH 100 -6.5 -5.63103 | overlap 3620492 TGCCAATGAAAAAAA TGATGGC CAT GCCATCG CAACCGTGCACGGTA TERM 4008 3620506 - 3620492 - gH 86 -10 -3.96777 | overlap 3620491 GCCAATGAAAAAAAT GATGGC CAT GCCATC GCAACCGTGCACGGT YPA_3283 3620177 - 3620749 + | hypothetical protein TERM 4009 3621857 - 3621845 - gf 75 -9.1 -3.65199 | opp_overlap 3621852 3621853 AATTCCGCACTCAAA CGCAG CCA CTGCG TAAGCAGATTATGAC YPA_3284 3620710 - 3622095 + | ATPase TERM 4010 3622180 - 3622147 - f 73 -9.7 -3.04263 | opp_overlap 3622169 3622173, overlap 3622149 ATGGCATCGTGAATA TAGTCGTGCGAAT TGAGTTAG AGTCGCACGACTA GAGCGGCGTGATTTT YPA_3285 3622230 - 3623219 + | putative glycosyl transferase YPA_3286 3623312 - 3624292 + | putative sugar transferase tauD 3625153 - 3624305 - | taurine dioxygenase YPA_3288 3626004 - 3625150 - | taurine transporter subunit TERM 4011 3625436 - 3625422 - G 79 -7 -4.64846 | overlap 3625424 CCACAAACCATAAAA CCTGCC AAC GGCTGG CACCTAATGCACGGG tauB 3626768 - 3626001 - | taurine transporter ATP-binding subunit TERM 4012 3626439 - 3626459 + g 77 -9 -4.0274 | gap 1 CCGGTTTAGCATTTT CAG-GGCGG TTAC CCGCCGCTG TTCTTTACTCATCCC tauA 3627817 - 3626777 - | taurine transporter substrate binding subunit TERM 4013 3627943 - 3627905 - R 83 -12.1 -2.74597 | opp_overlap 3627912, overlap 3627912 3627916 3627921 CCGAGAGAGAGAGCA GCATAAAGGAATAAA AGAATATTG TTTATTCCTTTATGC GATAACAGATGTACT YPA_3291 3628622 - 3628020 - | putative ABC-transport protein TERM 4014 3628911 - 3628935 + G 71 -5 -4.58283 | opp_overlap 3628900, overlap 3628900 3628913 AGAAGCCCCGAGTGG TGCTCTTCCA CGGTT TGGAAGGGAA TTTTTACAGCCCTTA YPA_3292 3628724 - 3629704 + | putative hydrolase YPA_3293 3629701 - 3629937 + | hypothetical protein TERM 4015 3630429 - 3630461 + G 72 -4 -4.84311 | gap 1, overlap 3630430 TCCCTGGCACCTTTA C-TCCTTGGGAGCCG CTAC CGGAACCCACGGATG TTTTATTCTATGAAG TERM 4016 3630430 - 3630459 + G 71 -7.7 -4.03793 | overlap 3630429 CCCTGGCACCTTTAC TCCTTGGGAGCCG CTAC CGGAACCCACGGA TGTTTTATTCTATGA TERM 4017 3630771 - 3630807 + G 75 -8.7 -3.90038 | overlap 3630763 CGTTAGACGAAAGTT TCGTTGTGATCCATTTC CGT GGTTTGGATCACATCGA TTTCCCTTATTTGCT YPA_3294 3630086 - 3630955 + | phosphoribulokinase 1 YPA_3295 3631564 - 3631133 - | hypothetical protein TERM 4018 3631499 - 3631469 - G 100 -8.3 -5.3167 | overlap 3631492 GAAAAACAAAGAAAA TGAGGCGACAACA AACAA TGATATCGCCCCA CAGGCAACCGATATT TERM 4019 3631624 - 3631601 - R 93 -8.9 -4.56775 | opp_overlap 3631601 3631622 3631623 ATTTTGGCCTAAAAA CCCATAACC AAACCG GGCTATGGG TGGTTCACCATTTAC YPA_3296 3632043 - 3631636 - | hypothetical protein TERM 4020 3632975 - 3632947 - g 78 -6.2 -4.8048 | gap 2 GGCGGATACTAAAAA TGCTGGAAGATCAA AAC TTGATCT-CC-GCA CACGGTAAAACGATC YPA_3297 3632379 - 3633011 + | cAMP-regulatory protein TERM 4021 3633025 - 3633055 + F 100 -12.7 -4.75063 | gap 1, opp_overlap 3633025 AATTCCCTCTAAAAA CCGGCGTTAA-AGC TGAA GCTATTAGCGCCGG TTTTTCCCGTTTTCT TERM 4022 3633055 - 3633025 - f 100 -10.5 -4.57341 | gap 1, opp_overlap 3633025 AATTCCCTCTAAAAA CCGGCGTTAA-AGC TGAA GCTATTAGCGCCGG TTTTTCCCGTTTTCT TERM 4023 3633685 - 3633673 - g 73 -5.5 -4.66833 | CTTGAACCCGAAAAA GCGAT ACC ACCGC TACTCGATAGACAAC TERM 4024 3634659 - 3634647 - g 71 -5.5 -4.58395 | opp_overlap 3634650 GTTATTGCGTAAAAA TGCCC ATC AGGCA CTGGAGGCTTATCAG YPA_3298 3633097 - 3635217 + | hypothetical protein TERM 4025 3635316 - 3635342 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3635305, overlap 3635311 3635317 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4026 3635317 - 3635343 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3635305, overlap 3635311 3635316 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT argD 3636660 - 3635443 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 4027 3636757 - 3636740 - R 76 -2.7 -5.30686 | AATATGCATAAAAAA TCATCCG CAAG CAAATGA TAAATGATGTCATGG YPA_3300 3637368 - 3636793 - | para-aminobenzoate synthase component II YPA_3301 3639152 - 3637611 - | hypothetical protein YPA_3302 3640047 - 3639478 - | peptidyl-prolyl cis-trans isomerase A (rotamase A) TERM 4028 3640266 - 3640234 - H 81 -11.3 -2.8194 | opp_overlap 3640229, overlap 3640225 TAATGAGTCACCACA TCCCAGACTCCAGCA AGA TTCTGGAGTCTGGAT CACGATTCTCTTACT TERM 4029 3640356 - 3640369 + H 84 -5.3 -5.35224 | opp_overlap 3640356 CTAATCTGCTTCAAA TGAGA GCGC TCTCA TTTTGTTTTTCTGCA TERM 4030 3640473 - 3640441 - H 86 -12.2 -3.00498 | gap 1, opp_overlap 3640440 3640439 3640443, overlap 3640443 3640445 GAGACCGTACAGAGA CAGACTCACC-TGAT GAAA ATCATGGTGAGCCTG AATTTATCCACAGAT TERM 4031 3640537 - 3640547 + H 71 -8.2 -3.53811 | ACTGAACTTTATCGC CGGC AGA GCCG TTTGGAGCCCCTACA YPA_3303 3640563 - 3641876 + | putative glycosyl hydrolase TERM 4032 3642320 - 3642340 + G 74 -2.4 -5.18357 | overlap 3642321 ACGCTGGGGTTGGTG ACCACCTC ATACC GAGGGGGC TTTTTTGGTGCCTTA TERM 4033 3642449 - 3642434 - g 71 -7.6 -4.10179 | GATAATGCAGATAAA GAATGG TTAG CCATTC AGCGGCTGTATAACT YPA_3304 3642125 - 3643111 + | LacI family transcriptional regulator TERM 4034 3643160 - 3643183 + T 100 -12.4 -3.40899 | opp_overlap 3643160 ATTAATTGTTATTAA CGTGGCAAGC CATC GCCTGCCACG TTCTGCTAGCGCATT TERM 4035 3643183 - 3643160 - T 100 -14.6 -3.16921 | opp_overlap 3643160 ATTAATTGTTATTAA CGTGGCAAGC CATC GCCTGCCACG TTCTGCTAGCGCATT YPA_3305 3645266 - 3643206 - | putative membrane receptor protein TERM 4036 3645001 - 3644978 - G 70 -11 -2.68823 | opp_overlap 3644965, overlap 3644977 3644980 TGGTCCTCAGATAAT CAGTACCGTC ACTG GCCGGTACTG GCTGGCGGGGCACTT YPA_3306 3645752 - 3646936 + | hypothetical protein TERM 4037 3646951 - 3646979 + T 78 -10.2 -3.2827 | overlap 3646953 ATTTATCTGCGTTAC CGCCCTGCCGCC GCCAA GGTGGCAGGGTA TTGATGATTCACTAA TERM 4038 3646953 - 3646977 + T 100 -15 -3.20494 | overlap 3646951 TTATCTGCGTTACCG CCCTGCCGCC GCCAA GGTGGCAGGG TATTGATGATTCACT YPA_3307 3648319 - 3647021 - | cytosine deaminase TERM 4039 3647763 - 3647748 - G 89 -10.4 -4.35524 | CGGGTAAATTCAAAA TGGGGG ATCG CCCCCA CCGCATCCGCACCCA TERM 4040 3648672 - 3648657 - g 100 -7.6 -5.50723 | TGAGCAAAATAAAAA TTGCCA TCAT TGGCAA CGGCATGGTCGGCCA TERM 4041 3650789 - 3650777 - g 80 -10.5 -3.73072 | opp_overlap 3650776 3650777 AACGGCGGCATGAAA CCGCG TCA CGCGG ATTTACTGGCAGCCG YPA_3308 3648641 - 3651187 + | nitrite reductase nirD 3651184 - 3651510 + | nitrite reductase small subunit YPA_3310 3651701 - 3652507 + | nitrite transporter NirC cysG 3652595 - 3654007 + | siroheme synthase TERM 4042 3654135 - 3654158 + T 76 -11 -2.53641 | opp_overlap 3654136, overlap 3654134 GGTTAATGCTGATTA ATGAGGGGGA AATT TCCCCCTCAC ATTACTGATGCGTTG TERM 4043 3654157 - 3654136 - T 100 -14.5 -3.16742 | opp_overlap 3654135 3654134 GTTAATGCTGATTAA TGAGGGGGA AATT TCCCCCTCA CATTACTGATGCGTT YPA_3312 3655220 - 3654180 - | tryptophanyl-tRNA synthetase YPA_3313 3655920 - 3655222 - | phosphoglycolate phosphatase TERM 4044 3655707 - 3655681 - G 70 -8 -3.79882 | overlap 3655704 ATAATAGTGATCAAA CAGCTCGCGG GTCTGTG CCACAAGCTG AGCATTATGTTCACG YPA_3314 3656590 - 3655913 - | ribulose-phosphate 3-epimerase YPA_3315 3657708 - 3656893 - | DNA adenine methylase TERM 4045 3657246 - 3657234 - G 91 -5.5 -5.38054 | opp_overlap 3657234 3657235, overlap 3657228 3657235 GCTCACAAACAAAAA CCGCA TTT TGCGA TTTTTCAGCAAACCA TERM 4046 3657268 - 3657288 + g 82 -3.9 -5.24129 | AGCAAACCAATATAA CTCCGCTTC TGG GAAGTAGGG TTTTTTGTAGCGACC TERM 4047 3657355 - 3657332 - G 73 -9 -3.69094 | AATTCACCACTCAAA TTATAACGAC ACAG GCCGTTATAA CAGTGGCGATTGAGA YPA_3316 3658781 - 3657792 - | hypothetical protein aroB 3660123 - 3659035 - | 3-dehydroquinate synthase aroK 3660701 - 3660180 - | shikimate kinase I YPA_3319 3662402 - 3661050 - | putative outer membrane porin HofQ TERM 4048 3661211 - 3661227 + gH 75 -8.7 -3.62418 | AAATCCCGCCCAGCA CGATGGT TTC GCCATCG TTTACAGTAACTTGT YPA_3320 3662209 - 3662598 + | hypothetical protein YPA_3321 3663029 - 3662601 - | hypothetical protein YPA_3322 3663621 - 3662995 - | hypothetical protein YPA_3323 3664174 - 3663569 - | hypothetical protein YPA_3324 3665070 - 3664174 - | hypothetical protein TERM 4049 3664297 - 3664286 - G 71 -7.2 -4.10657 | TGATAGTGCGCAAAA GCCG TTAG CGGC GACCAAGACCGTGTG TERM 4050 3664590 - 3664580 - G 72 -8.2 -3.83323 | GCCATATAACGTAAA GCGC ATG GCGC AATATCAATCACTTG TERM 4051 3664634 - 3664616 - G 75 -8.8 -3.96327 | ACTTGTGAGGATAAA CCCGCCTG TTC CAAGCAGG CTTGCCATTGCTGCA TERM 4052 3666394 - 3666381 - g 70 -2.3 -5.00616 | overlap 3666382 3666383 3666385 CCGGTCCCCAAAAAA GCGAC TGAT GTCGT TCAGCCTGGTCAGCA mrcA 3665166 - 3667745 + | peptidoglycan synthetase TERM 4053 3667801 - 3667778 - T 100 -14 -5.10497 | opp_overlap 3667778 AACTTATCTAAAAAA CCAGATGATC TGAT GATCATCTGG TTTTTTTATAAATTA TERM 4054 3667778 - 3667801 + T 100 -14 -5.66684 | opp_overlap 3667778 AACTTATCTAAAAAA CCAGATGATC TGAT GATCATCTGG TTTTTTTATAAATTA nudE 3668426 - 3667881 - | ADP-ribose diphosphatase NudE TERM 4055 3668122 - 3668112 - G 72 -8.2 -3.89617 | AGCGAGAAAGTCAAA GCGC TCA GCGC CATATCCAACTTCTT TERM 4056 3670416 - 3670405 - g 71 -5.8 -4.28597 | opp_overlap 3670409 ACAATCAATAAACAA CTGC ACCC GCAG GGCTCTGATGCCAGC TERM 4057 3670747 - 3670760 + G 78 -3.7 -5.14563 | opp_overlap 3670745, overlap 3670745 GAAGCGTTGAATAGC CCACC TCCG GGCGG TTTTTTGATCACCAG YPA_3327 3669013 - 3671160 + | hypothetical protein YPA_3328 3671304 - 3671984 + | hypothetical protein YPA_3329 3672013 - 3672420 + | heat shock protein 15 hslO 3672583 - 3673464 + | Hsp33-like chaperonin TERM 4058 3673478 - 3673505 + F 100 -13.4 -3.82097 | AATCCTCGTAATGCT TAGCCGGGTACC TATT GGTGCCCGGCCA TTTCCTCCGTTTCAC YPA_3331 3673661 - 3675280 + | phosphoenolpyruvate carboxykinase TERM 4059 3675314 - 3675337 + T 100 -6.7 -5.61913 | AGTTTAGCGTTACAG GGGGCAC TTTCAGAATT GTGCCCC TTTTTTCTATTTATT TERM 4060 3675433 - 3675419 - T 84 -11.4 -3.14564 | opp_overlap 3675416 TTATCCCTCCATCAA GCCACC GCT GGTGGC TTGGGCTTCACATCC envZ 3676767 - 3675415 - | osmolarity sensor protein ompR 3677483 - 3676764 - | osmolarity response regulator greB 3678134 - 3677619 - | transcription elongation factor GreB TERM 4061 3678834 - 3678816 - g 74 -11.8 -2.85351 | GCGGGTTAGATGATA TCCAACTG CGT CAGTTGGA AAGCCGTCTGGGGTA TERM 4062 3678934 - 3678911 - g 73 -5.8 -4.49337 | overlap 3678915 GAAGATCAAGGAAAA CTCACCGACC AGCT GGCCGGGGCG ATCAACGCCACCCTA YPA_3335 3678668 - 3681043 + | hypothetical protein TERM 4063 3681063 - 3681118 + F 100 -29.6 -2.90813 | opp_overlap 3681054 3681068, overlap 3681068 TGACAAGGACGGCCA TTAAACTGCCCTCCTCATTATTAGAT TGAT ATCCAATAATGAGGAGGGCAGTTTAA TAATTTAACAAAATA TERM 4064 3681113 - 3681068 - f 100 -27.3 -3.73953 | opp_overlap 3681068 3681063, overlap 3681054 AGGACGGCCATTAAA CTGCCCTCCTCATTATTAGAT TGAT ATCCAATAATGAGGAGGGCAG TTTAATAATTTAACA TERM 4065 3681068 - 3681113 + F 100 -25.1 -3.8901 | opp_overlap 3681054 3681068, overlap 3681063 AGGACGGCCATTAAA CTGCCCTCCTCATTATTAGAT TGAT ATCCAATAATGAGGAGGGCAG TTTAATAATTTAACA feoA 3681567 - 3681794 + | ferrous iron transport protein A TERM 4066 3682318 - 3682306 - g 80 -4.7 -5.11613 | opp_overlap 3682306 ACATTATCTAAAAAA CTGGG TTG CCCGG TCATTCCATTGGTAT feoB 3681886 - 3684201 + | ferrous iron transport protein B TERM 4067 3684183 - 3684197 + F 74 -10 -3.15579 | opp_overlap 3684182 TTGCTGCCGAAGTAG TGGCAG CAA CTGCCA TTGATCACCCATTAG YPA_3338 3684237 - 3684494 + | hypothetical protein TERM 4068 3684494 - 3684517 + T 76 -11 -2.50966 | opp_overlap 3684495, overlap 3684493 3684492 3684490 3684515 TCACGCACACCAATA AGAGATGCCC ATAT GGGCATCTCA ATATGTTGATTCCGT TERM 4069 3684516 - 3684495 - T 100 -14.5 -3.78034 | opp_overlap 3684494 3684493 3684492 3684490 3684515 CACGCACACCAATAA GAGATGCCC ATAT GGGCATCTC AATATGTTGATTCCG YPA_3339 3684901 - 3684632 - | hypothetical protein YPA_3340 3685868 - 3685071 - | putative biotin biosynthesis protein TERM 4070 3686463 - 3686425 - g 78 -13.1 -2.90763 | gap 1, overlap 3686430 GCTACAGCGTATACA CGCAACGCCGCCG-CAAC AGCA GCTGACGGCGGCACAGCG GCGAAAGAACGTGCG TERM 4071 3686458 - 3686430 - g 74 -11 -3.16177 | gap 1, overlap 3686425 AGCGTATACACGCAA CGCCGCCG-CAAC AGCA GCTGACGGCGGCA CAGCGGCGAAAGAAC YPA_3341 3685934 - 3686635 + | gluconate periplasmic binding protein YPA_3342 3686695 - 3687270 + | putative DNA uptake protein malQ 3689695 - 3687599 - | 4-alpha-glucanotransferase YPA_3344 3691780 - 3689708 - | glycogen/starch/alpha-glucan phosphorylase YPA_3345 3692112 - 3691762 - | hypothetical protein TERM 4072 3694777 - 3694759 - g 70 -11 -2.55074 | TTGAAGGTGAAGCCA TGGCGCAA CAA CTGCGCCA ACTGATCCAACTCAA TERM 4073 3694874 - 3694884 + G 78 -4 -5.14163 | overlap 3694876 GCATAAATTCGCGCA TTTC GAC GAAA TTTTTGTTGATAAAT YPA_3346 3692430 - 3695141 + | transcriptional regulator MalT glpE 3695516 - 3695845 + | thiosulfate sulfurtransferase YPA_3348 3695863 - 3696699 + | intramembrane serine protease GlpG TERM 4074 3696979 - 3696967 - g 76 -6.2 -4.63218 | overlap 3696968 GTGGTCGGAAGAAAA GGCG CGGAT CGCC CAACGCGTTGCTAGC YPA_3349 3696734 - 3697492 + | DNA-binding transcriptional repressor GlpR TERM 4075 3697685 - 3697629 - g 73 -10.3 -3.30159 | gap 1, opp_overlap 3697634 3697639 3697644, overlap 3697630 3697639 CCAAGGGGGCCATAA GTGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCAA TGAAACACCCTTTTT TERM 4076 3697684 - 3697630 - g 78 -13.8 -2.57881 | gap 1, opp_overlap 3697634 3697639 3697644, overlap 3697629 3697639 CAAGGGGGCCATAAG TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 4077 3697634 - 3697680 + G 89 -15.4 -3.05384 | gap 1, opp_overlap 3697630 3697629 3697639, overlap 3697639 3697644 GGGGCCATAAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4078 3697674 - 3697639 - g 79 -12.7 -3.08471 | opp_overlap 3697634 3697639 3697644, overlap 3697630 3697629 CATAAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4079 3697639 - 3697675 + G 73 -10.3 -3.19192 | gap 1, opp_overlap 3697639 3697630 3697629, overlap 3697634 3697644 CATAAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4080 3697644 - 3697654 + G 76 -5.4 -4.88736 | opp_overlap 3697639 3697630 3697629, overlap 3697639 3697634 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPA_3350 3697556 - 3698215 + | insertion element IS1661 DNA-binding protein TERM 4081 3698204 - 3698192 - T 79 -3.3 -5.32882 | GAGCAGCAGAAAAAA CTGTC AAC GACGG ATGAAAAGTGATCCA YPA_3351 3699038 - 3698259 - | transposase/IS protein TERM 4082 3698957 - 3698971 + g 77 -11.4 -3.3506 | overlap 3698970 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3352 3700060 - 3699038 - | transposase for insertion sequence IS100 TERM 4083 3700082 - 3700064 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 4084 3700979 - 3700961 - g 71 -11 -2.73735 | overlap 3700951 3700949 3700972 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPA_3353 3700117 - 3700998 + | transposase for insertion sequence IS1661 YPA_3354 3703560 - 3701194 - | hypothetical protein TERM 4085 3702814 - 3702837 + g 73 -8.8 -3.67597 | opp_overlap 3702809 TAACCAATCACTGGC CGATTCTGCC ACAT GGCGGAAACG TTCTTCGCTGGCAGC YPA_3355 3703652 - 3703825 + | hypothetical protein YPA_3356 3704200 - 3705477 + | putative drug efflux protein TERM 4086 3706816 - 3706849 + G 70 -8.9 -3.52906 | gap 1, overlap 3706814 AGCCAGATTGCCGGG CCGATCATCGCCACCA CAC TGGTGTTGATGG-CGG TATTTGTGCCAATCG TERM 4087 3706964 - 3706978 + G 70 -9.2 -3.50853 | overlap 3706954 CGTTAACGCTGAGTC CGGCGC TGT GTGCCG TTCTGCTTAAGCGGC YPA_3357 3705490 - 3708609 + | putative integral membrane efflux protein TERM 4088 3708678 - 3708719 + T 86 -11.5 -3.34715 | opp_overlap 3708681 3708682, overlap 3708677 3708679 ATGCTGTTTTGTCAT AAAGCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGTGAC TCTTTGGGGGCAGTG TERM 4089 3708679 - 3708718 + T 100 -15 -2.60615 | opp_overlap 3708681 3708682, overlap 3708678 3708677 TGCTGTTTTGTCATA AAGCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGTGA CTCTTTGGGGGCAGT TERM 4090 3708716 - 3708681 - T 100 -17.6 -3.85698 | opp_overlap 3708679 3708678 3708677, overlap 3708682 CTGTTTTGTCATAAA GCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGT GACTCTTTGGGGGCA TERM 4091 3708715 - 3708682 - T 100 -21.1 -2.91276 | opp_overlap 3708679 3708678 3708677, overlap 3708681 TGTTTTGTCATAAAG CCCATACCCGCCGGT TAAG ACCGGTGGGTATGGG TGACTCTTTGGGGGC YPA_3358 3710234 - 3708744 - | enterotoxin-like protein TERM 4092 3710446 - 3710464 + H 100 -12.4 -4.13995 | CAATTCTGCCTTTGA CCTTCCCC CAG GGGGAGGG TTTAGTTTGTAGGCA TERM 4093 3710780 - 3710799 + G 70 -2.2 -5.04733 | gap 1, overlap 3710782 3710785 3710790 GGCAACAGAAATTTG TTTATCCGC TGG GCG-ATAGA TTTTATTTGTCATTC YPA_3359 3710512 - 3711099 + | hypothetical protein TERM 4094 3711321 - 3711305 - f 82 -5.9 -5.02645 | AACAAATAAAATAAA CAGTAAC TAC ATTACTG AATCATCTTGTTGTT TERM 4095 3711360 - 3711370 + F 79 -3.2 -5.35224 | ATTTAATAAATTATT GTGG TGT CTAC TTTTCTTTTTATAAG TERM 4096 3711493 - 3711503 + F 82 -3.2 -5.5208 | TTCTTGTATTTTTGT GGGA TTT TTCC TTTTTTATATTATAC TERM 4097 3712197 - 3712219 + G 72 -9.9 -3.34222 | gap 1 ATATTACTGTCAGCA CGCAGGCAGA GCTT TCTGCC-GCG TTATCCAATGGTACT TERM 4098 3716586 - 3716573 - g 71 -6.7 -4.13767 | CGTGCCACCTTAAAA CTGTC GGAT GACAG TGTGACCACCGTCGG TERM 4099 3718407 - 3718394 - g 71 -6.7 -4.13767 | CGTGCCACCTTAAAA CTGTC GGAT GACAG TGTGACCACCGTCGG TERM 4100 3722931 - 3722921 - g 72 -8.2 -3.92542 | GTCACGGTGAAACAA GCCG GGA CGGC GAATATCGCGGAGCT YPA_3360 3711953 - 3723070 + | putative autotransporter protein TERM 4101 3723113 - 3723143 + T 100 -11.3 -5.26316 | opp_overlap 3723113 CGACATGATGATCAA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGGGATAA TERM 4102 3723143 - 3723113 - T 86 -11.3 -3.24188 | opp_overlap 3723113 CGACATGATGATCAA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGGGATAA YPA_3361 3725053 - 3723173 - | leucine-rich repeat-containing protein TERM 4103 3723641 - 3723660 + g 74 -3.6 -5.02231 | overlap 3723629 3723643 GACTTCGATATCATC GACTGAAT TTAC ATTCAGTG TTTTTAGTATTTTTA TERM 4104 3723992 - 3723982 - G 91 -6.8 -5.08088 | AACGGTGAAGAAAAA CGCT AAA AGCG GCTGAGTTAGCTTCT TERM 4105 3724879 - 3724891 + g 80 -10.5 -3.73647 | CTTTCATGCATTCCA CGGCG AAG CGCCG TTGTTCGTCAGTACC TERM 4106 3725208 - 3725238 + r 100 -11.3 -5.26316 | overlap 3725236 AGAATGACCTATCTA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGAGATAA TERM 4107 3725370 - 3725398 + r 90 -11 -3.9749 | gap 1 ACCCTTCCTTGGGGG GCGATCCGCACCA TCCC TGGCGCGGA-CGC TTTACTCTTCTGCCT YPA_3362 3726491 - 3725616 - | leucine-rich repeat-containing protein TERM 4108 3726641 - 3726671 + H 100 -11.3 -5.24129 | AGAATGACCTATCTG CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTGTGCCCAGA TERM 4109 3726690 - 3726708 + H 100 -16 -3.07307 | opp_overlap 3726690 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4110 3726708 - 3726690 - H 100 -16 -4.36914 | opp_overlap 3726690 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3363 3726821 - 3727279 + | transposase for the IS1541 insertion element TERM 4111 3727353 - 3727385 + T 95 -11.3 -3.89346 | opp_overlap 3727360, overlap 3727357 3727359 3727360 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATGGGATACGAG TERM 4112 3727357 - 3727381 + T 100 -9.9 -4.56367 | opp_overlap 3727360, overlap 3727353 3727359 3727360 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATGGGATA TERM 4113 3727359 - 3727379 + T 100 -12.5 -3.88703 | opp_overlap 3727360, overlap 3727357 3727353 3727360 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATGGGA TERM 4114 3727360 - 3727378 + T 100 -16 -2.92499 | opp_overlap 3727360, overlap 3727359 3727357 3727353 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG TERM 4115 3727378 - 3727360 - T 100 -16 -4.8048 | opp_overlap 3727360 3727359 3727357 3727353 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG YPA_3364 3729228 - 3727411 - | leucine-rich repeat-containing protein YPA_3365 3729432 - 3729247 - | hypothetical protein TERM 4116 3730055 - 3730075 + G 75 -8.9 -3.83756 | TTTATTTACGCGCTG GGGGTGTGC TGG GCACTCTCC TTTGGATTATCGTTT TERM 4117 3730150 - 3730171 + G 74 -7.3 -4.17556 | gap 1, opp_overlap 3730140 3730136, overlap 3730150 AGTTACCAATATGTT GG-CACCGGT TGA ACTGGTGACC TTTATTACCACTATG YPA_3366 3729947 - 3731503 + | putative integral membrane efflux protein YPA_3367 3731581 - 3732813 + | peptidase T TERM 4118 3732854 - 3732887 + F 100 -16.1 -3.42861 | overlap 3732850 TGCCTTATCTCCATG TAGGGTACTGGCGTG TTAG CTTGCCAGTACCCTA TTAATGTTGTGACTT TERM 4119 3733366 - 3733349 - g 76 -2.7 -5.2112 | AACAGCAGCAAAAAA CACCCAT AAGT ATAAGTG TATTAACGGGCTTTG TERM 4120 3733465 - 3733475 + G 83 -3.2 -5.44119 | AAAGCGGGCAATCCA TCTG ACG CAGG TTTTTTTACCATGCG YPA_3368 3733201 - 3735273 + | putative TonB-dependent outer membrane receptor TERM 4121 3735630 - 3735643 + G 70 -2.3 -4.91511 | overlap 3735624 TGCTATTCTGCTCAT GCCAG GAGG CTCGC TTTTTGTCATAAGCT TERM 4122 3736216 - 3736232 + G 74 -7.9 -4.20106 | overlap 3736218 3736226 GATTATCAGGCTAAC TCCGGGG CTG CCCCCGA TTTTGCGTGGGATTT TERM 4123 3738772 - 3738748 - g 70 -3 -4.75472 | gap 1, overlap 3738751 GCCACATCAATAAAA TCAGTTACATC AATA AATGTAAC-GA ACGGTGCAATAGTGA YPA_3369 3735424 - 3738837 + | hypothetical protein TERM 4124 3738829 - 3738847 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3370 3738851 - 3739873 + | transposase for insertion sequence IS100 TERM 4125 3739954 - 3739940 - g 77 -11.4 -3.3506 | overlap 3739931 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3371 3739873 - 3740652 + | transposase/IS protein TERM 4126 3741071 - 3741060 - g 71 -7.2 -4.07568 | CTGTCGCTTTGAAAA GGCG CAAT CGCC CAAACAATGGTTGGC TERM 4127 3741837 - 3741851 + G 75 -9.2 -3.90586 | opp_overlap 3741831 3741828 TGCAAAGGAGCGCTA CGCGCT ACG GGCGCG TTTATCCCATCGTAT TERM 4128 3742867 - 3742845 - g 72 -9.8 -3.41051 | opp_overlap 3742845 3742844 GTATGTGGATGACAA GGTGCTGGCG CAT CGCCAACAGC CGTTATCGGGTGTCC TERM 4129 3742919 - 3742907 - g 79 -9.1 -4.13767 | opp_overlap 3742906 3742889 3742907 CTTTTGAGGCCAAAA CCCTG CAT CAGGG CTTTTGGCAGCAAGT TERM 4130 3745030 - 3745051 + G 77 -10.2 -3.53012 | GATGCCCTGCCTGAG GGGATTGC CATGCT GCAATCCC TTTGCCACGGAGGGA YPA_3372 3740668 - 3747318 + | putative siderophore biosysnthesis protein TERM 4131 3747324 - 3747343 + F 81 -10.8 -3.34398 | opp_overlap 3747315 3747322 3747314, overlap 3747322 AACAACTTGAACACG CTGTGCAA CGGC TTGCACAG TATTTACACGAGCAA YPA_3373 3747326 - 3749014 + | putative siderophore biosysnthesis protein TERM 4132 3750289 - 3750275 - g 79 -11.4 -3.61398 | TGGGGGCGGCAACAA GGCGTG GGG CACGCC AGAATGCCCATCGTT TERM 4133 3750616 - 3750640 + G 83 -9.9 -4.21933 | GGAGGAGGTCGGCAC GGGAGAGGCAC TTT GTGACTCGCCC TTGTTTTGGCATTCA TERM 4134 3751513 - 3751529 + G 79 -12.3 -3.19192 | TTATATCTTGCTTTC CGGGGAT TGG ATCCCCG TTAACTTACCTCCAG TERM 4135 3752723 - 3752741 + G 70 -3.2 -4.78107 | opp_overlap 3752723 CTCTTACAGGGCAAA GAAGAT CCCCTCA ATCTTC TTTTTCCTGATGGTC YPA_3374 3749027 - 3754810 + | putative siderophore biosysnthesis protein YPA_3375 3754807 - 3755877 + | hypothetical protein TERM 4136 3756943 - 3756965 + G 100 -9.8 -4.99035 | TTGTCGAACCGATGA TGGCGTCACC TAA GGTGGCGACA TTTTTATCTCAATGG YPA_3376 3755874 - 3757001 + | hypothetical protein TERM 4137 3757424 - 3757409 - g 70 -4.6 -4.64676 | overlap 3757410 GTATCTTGAACAAAA TCACCC AATT GGGTGG CAGCACATTGGACTA TERM 4138 3757640 - 3757652 + G 76 -3.3 -5.1244 | TTCGGCTACAGGTGT TCCCC GGT GGGCA TTTTTATCTTAATCA YPA_3377 3756994 - 3757758 + | putative thioesterase TERM 4139 3758052 - 3758068 + G 73 -2.9 -5.00616 | TGTGCTCTTTGATTG CCATGAC GCT GCTATGG TTTTTTGCGCCAGAG TERM 4140 3758289 - 3758305 + G 100 -6.5 -5.29445 | GTGTTTGGGGGTGGT CCGTCAC CGT GTGGTGG TTTTTGTTGTTACAG YPA_3378 3757748 - 3759052 + | hypothetical protein TERM 4141 3759473 - 3759522 + GF 83 -2.9 -5.38326 | gap 2, overlap 3759479 TGGCTCACCATTTAC CCG-A-TATGGCGGCGGCAATTG TCACGC CTATTGCTGCCGCCATTTTACTG TTTTTCTTTGATTGG TERM 4142 3759479 - 3759514 + GF 100 -15.5 -4.62102 | overlap 3759473 ACCATTTACCCGATA TGGCGGCGGCAATTG TCACGC CTATTGCTGCCGCCA TTTTACTGTTTTTCT TERM 4143 3759836 - 3759859 + GF 100 -9.6 -5.00616 | ATCTCGGTTTATTGT GCATTATGCC TGTT GGCATCATGC TTTTTTCCCAAGGGG TERM 4144 3760568 - 3760549 - gf 72 -9.2 -3.14132 | overlap 3760553 GTGCTCTTGGATGAA GCAACGGC TTAT GCCGATGC CCGTAACGAGGTCCG YPA_3379 3759052 - 3760824 + | ABC-transporter transmembrane protein TERM 4145 3761289 - 3761306 + GT 90 -11.3 -3.60971 | opp_overlap 3761284 TGCTAAAAGATTGGC GCATGGC GTTA GCCATGC TTTCAACGTTACCCT TERM 4146 3761543 - 3761531 - gT 74 -4.7 -4.87786 | overlap 3761520 TTAACGGCAGAAAAA GCCGG TGT CTGGC CGATCTACAGTTTTA TERM 4147 3761620 - 3761632 + GT 73 -9.1 -3.52079 | CTGGGGCTGGGTAGG GGGGA GGA TCCCC TTGTCTGAAGTATTG YPA_3380 3760799 - 3762574 + | ABC-transporter transmembrane protein YPA_3381 3763772 - 3762897 - | hypothetical protein TERM 4148 3763966 - 3763986 + r 84 -9.9 -3.75933 | overlap 3763941 CTATTTATATTATTT TATGCTTAA TAG TTAAGCATA TTTAATAACATATAT YPA_3382 3764606 - 3764208 - | hypothetical protein TERM 4149 3765826 - 3765848 + H 83 -11.4 -2.94912 | opp_overlap 3765830, overlap 3765830 AACATAAATGCGGTT CAAATGGGTT CCA GACCCATTTG TCTCTCGCTTGCCGC TERM 4150 3766463 - 3766490 + G 74 -7 -4.42788 | gap 1 AGCCGCGGTAATTAT CATCGGCCTGATC TTT GGTCTGGC-GATG TTTTATGAGGTTGCC YPA_3383 3766008 - 3767489 + | fructuronate transporter TERM 4151 3768011 - 3768001 - f 75 -3.2 -5.14626 | ATCACGAAAATAAAA CGCT CGA AACG ACGTAGGGTAAGGAA YPA_3384 3768490 - 3770148 + | hypothetical protein TERM 4152 3771029 - 3771009 - g 70 -11.1 -2.50816 | opp_overlap 3771009, overlap 3771008 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTTCGGGTGAAC YPA_3385 3770253 - 3772253 + | Outer membrane autotransporter barrel TERM 4153 3772304 - 3772272 - f 76 -9.2 -3.57144 | GTTTTTATGCGTAAA GGGTATCAGTATGC AGTGA GGGTACTGATACCC TAATAAATAACCTAA TERM 4154 3774810 - 3774797 - g 84 -2.3 -5.58454 | CGGATATCAAAAAAA TACCC TCGA GGGTT ATAAAAAATCCAAGA TERM 4155 3774901 - 3774871 - g 70 -9 -3.63228 | GGCACGATAAATTAA CCGTCGGTGACA CAATCAC TATCACCGCCGG CACCAGTATTACGCT YPA_3386 3772839 - 3775088 + | hypothetical protein YPA_3387 3775114 - 3776433 + | hypothetical protein TERM 4156 3778570 - 3778588 + G 73 -5.2 -4.60889 | overlap 3778572 GCAGCGCACGGAACT GGCCTATG ATG CATGGGGC TTTTTGCGGGTCATT YPA_3388 3776447 - 3780763 + | hypothetical protein YPA_3389 3781038 - 3781280 + | hypothetical protein TERM 4157 3781887 - 3781874 - g 79 -6.7 -4.59773 | TCTTACTTTGAAAAA TCTGG ATAG CCAGA AAGTTGTCTCCGGCA YPA_3390 3781824 - 3782237 + | hypothetical protein TERM 4158 3782359 - 3782380 + T 76 -10.2 -3.05596 | opp_overlap 3782359 TCATTGCCCCATAAA TTAGGCCC ATGCAG GGGCCTAA TTCCCTGACGGCGTA TERM 4159 3782380 - 3782359 - T 86 -10.2 -3.86346 | opp_overlap 3782359 TCATTGCCCCATAAA TTAGGCCC ATGCAG GGGCCTAA TTCCCTGACGGCGTA YPA_3391 3783787 - 3782417 - | Sodium:sulfate symporter YPA_3392 3785088 - 3784069 - | LacI-family regulatory protein TERM 4160 3784911 - 3784923 + g 75 -9.1 -3.87815 | TATCTCTGGCAATGG GCCGT TCC ACGGC TTTATGGACATAGCC TERM 4161 3785050 - 3785075 + g 100 -3.3 -5.85737 | gap 1, overlap 3785043 3785056 TACTCCCGCTTTGGC CGCAATGTGGCT CAT AGTCACTTT-CG TTTTTTTATTCATAT TERM 4162 3785056 - 3785070 + g 73 -6.4 -4.57518 | overlap 3785043 3785050 CGCTTTGGCCGCAAT GTGGCT CAT AGTCAC TTTCGTTTTTTTATT TERM 4163 3786454 - 3786472 + Gr 77 -11 -2.73735 | overlap 3786447 3786464 3786466 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPA_3394 3787220 - 3786435 - | transposase for insertion sequence IS1661 YPA_3393 3785370 - 3786545 + | hypothetical protein YPA_3395 3787921 - 3787274 - | insertion element IS1661 DNA-binding protein TERM 4164 3787840 - 3787794 - GfH 100 -15.4 -3.05384 | gap 1, opp_overlap 3787800, overlap 3787799 3787820 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCACCGGGGTCATG TERM 4165 3787835 - 3787799 - GfH 77 -10.3 -3.19192 | gap 1, opp_overlap 3787800, overlap 3787794 3787820 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCACCGGGG TERM 4166 3787800 - 3787835 + gFH 93 -12.7 -3.05384 | opp_overlap 3787799 3787794 3787820 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCACCGGGG TERM 4167 3787830 - 3787820 - GfH 76 -5.4 -4.88736 | opp_overlap 3787800, overlap 3787799 3787794 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAC YPA_3396 3787840 - 3788583 + | hypothetical protein YPA_3397 3788547 - 3789635 + | hypothetical protein TERM 4168 3789784 - 3789773 - g 78 -2.2 -5.28778 | overlap 3789777 ACCATGGATAAAAAA CAAC CAAC GCTG TCATTGCGGGTCGTC YPA_3398 3789761 - 3791077 + | hypothetical protein YPA_3399 3791077 - 3791622 + | putative lipoprotein YPA_3400 3791625 - 3792971 + | hypothetical protein YPA_3401 3792971 - 3793738 + | hypothetical protein TERM 4169 3794509 - 3794499 - g 70 -3.2 -4.83615 | CAGGTGCCAGAAAAA CTGC GTA ACAG CGAGTTGATGACGCT TERM 4170 3796295 - 3796269 - g 74 -8.6 -4.08706 | overlap 3796265 TTGTTATTACAGAAA GTGGCCGCTGGC ACC GCTATCAGCCAC ATTCGGATCGCGGTA YPA_3402 3793749 - 3796352 + | Clp ATPase TERM 4171 3797082 - 3797070 - g 73 -6.2 -4.54821 | ACGGTAACGACAAAA GCCG TATTG CGGC CAGTTTGGGGCTATC YPA_3403 3796349 - 3797146 + | hypothetical protein YPA_3404 3797143 - 3797829 + | hypothetical protein YPA_3405 3797835 - 3799223 + | hypothetical protein TERM 4172 3799310 - 3799332 + G 81 -12.8 -3.23711 | opp_overlap 3799309 3799310, overlap 3799301 TTCCTCGCCTTAAAG CGTCAATACC GGT GGTATTGGCG TTGATGGCTTGTGCG TERM 4173 3800622 - 3800597 - g 86 -6.9 -5.00616 | TCTGGCTGCAAAAAA CGAGAAAGCGA ATGT TCATTTTCTCG GGGGTGGGTGCCCTG TERM 4174 3801939 - 3801921 - g 79 -8.8 -4.18018 | overlap 3801922 GTTGGCGATCCAAAA CTCGCCCG CGC CGGGCAAA GCGGCGTTGAAGGCG YPA_3406 3799255 - 3802788 + | hypothetical protein TERM 4175 3803034 - 3803007 - gf 70 -3.4 -4.77983 | gap 1, overlap 3803011 3803014 AAGAGATCAACAAAA TCAACCACCCGGC ACG GCCAGA-GGTCAA CTGGGGTTTGATTGA TERM 4176 3803144 - 3803134 - gf 80 -2.4 -5.47218 | opp_overlap 3803134 CCGCACCCAAAAAAA TGGC CTG GCCG GTTTCACCGAGGGCT YPA_3407 3802913 - 3803695 + | hypothetical protein TERM 4177 3804139 - 3804127 - gf 78 -10.5 -3.39449 | opp_overlap 3804125 3804127 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA TERM 4178 3804127 - 3804139 + GF 77 -10.5 -3.13403 | opp_overlap 3804127, overlap 3804125 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA YPA_3408 3803602 - 3804225 + | hypothetical protein YPA_3409 3804247 - 3806649 + | putative Rhs accessory genetic element YPA_3410 3806655 - 3807113 + | hypothetical protein TERM 4179 3807249 - 3807264 + G 74 -6.8 -4.34488 | overlap 3807240 CACCGGCGGGGCGAC GCTGGT CGCT ACCGGC TTTATTGTGGGTATG TERM 4180 3809114 - 3809087 - g 70 -10.6 -2.93348 | GCTACGAATATGATA TCGATGGCCATC TGCT GACGGTCATCGA TGCTGAAAACCATTC YPA_3411 3807106 - 3809970 + | hypothetical protein YPA_3412 3809998 - 3811368 + | hypothetical protein YPA_3413 3811370 - 3811855 + | hypothetical protein TERM 4181 3811873 - 3811895 + T 72 -9.2 -3.19175 | CATGTAAGCGTATGG GGAGGATC ATTGTTG GATCCTCC TTGAATATATTACAA YPA_3414 3812096 - 3811905 - | hypothetical protein YPA_3415 3812396 - 3812172 - | hypothetical protein TERM 4182 3812427 - 3812458 + r 93 -12.3 -3.0752 | overlap 3812429 GTTGCTTGTGGTTAG CGGGGCTGAGGTG CTGATA CACCTCAACCCTG TGTTAAAATACTGTG TERM 4183 3812429 - 3812456 + r 84 -11.3 -3.09289 | overlap 3812427 TGCTTGTGGTTAGCG GGGCTGAGGTG CTGATA CACCTCAACCC TGTGTTAAAATACTG YPA_3416 3812885 - 3812478 - | putative transcriptional regulatory protein TERM 4184 3812752 - 3812784 + g 70 -2.6 -4.95843 | opp_overlap 3812756 TATTTATTGTACTGT GAAAGTTGCAAGCC AATAC GGGTCGCGACTTCC TTTTGTGTTTTATGT TERM 4185 3813126 - 3813138 + G 71 -10.5 -3.13403 | opp_overlap 3813126, overlap 3813124 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA TERM 4186 3813138 - 3813126 - g 75 -10.5 -3.39449 | opp_overlap 3813124 3813126 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA YPA_3417 3813048 - 3813224 + | hypothetical protein TERM 4187 3815212 - 3815233 + G 73 -5.1 -4.65916 | gap 1, opp_overlap 3815212, overlap 3815214 CCGAGACGATCAAAG TGCGTCGCAG TAC CTGCG-CGAA TTTTATTCAGGTGAA YPA_3418 3813246 - 3815444 + | putative Rhs accessory genetic element YPA_3419 3815447 - 3815869 + | hypothetical protein TERM 4188 3816009 - 3815981 - g 77 -10.2 -3.62096 | opp_overlap 3815976, overlap 3815999 CGGCATTACGTCAAA CCGCGCTGGG GCAACAGAG CCCGGCGCGG ACGGATTATCAGGTC TERM 4189 3819385 - 3819373 - g 70 -4.7 -4.69027 | overlap 3819362 3819375 AAACGCAGCCAAAAA GACGG CTA CCGGC CACAGCTGTGGCGCT YPA_3420 3815914 - 3820452 + | hypothetical protein YPA_3421 3820461 - 3821255 + | hypothetical protein TERM 4190 3821260 - 3821294 + T 100 -14.4 -5.14563 | opp_overlap 3821263, overlap 3821263 AACTGCCATAAATAA AAACCGGGAAGATCCT AAG AAGATCTTCCCGGTTG TTTTTTGATCGCCAG TERM 4191 3821263 - 3821291 + T 100 -16.1 -4.67552 | opp_overlap 3821263, overlap 3821260 TGCCATAAATAAAAA CCGGGAAGATCCT AAG AAGATCTTCCCGG TTGTTTTTTGATCGC TERM 4192 3821291 - 3821263 - T 100 -18.3 -5.38054 | opp_overlap 3821263 3821260 TGCCATAAATAAAAA CCGGGAAGATCCT AAG AAGATCTTCCCGG TTGTTTTTTGATCGC TERM 4193 3821542 - 3821564 + T 100 -4 -6.14618 | opp_overlap 3821543, overlap 3821543 TTTTTAGTGATACAA AGTGACTGGT TTA GCCAGCCACA TTTTTTTGTTTTATA TERM 4194 3821543 - 3821563 + T 75 -7.5 -4.25111 | opp_overlap 3821543, overlap 3821542 TTTTAGTGATACAAA GTGACTGGT TTA GCCAGCCAC ATTTTTTTGTTTTAT TERM 4195 3821563 - 3821543 - T 80 -9 -4.0641 | opp_overlap 3821543 3821542 TTTTAGTGATACAAA GTGACTGG TTTAG CCAGCCAC ATTTTTTTGTTTTAT YPA_3422 3822501 - 3821602 - | hypothetical protein YPA_3423 3822869 - 3822498 - | putative oxidoreductase YPA_3424 3823687 - 3822908 - | transposase/IS protein TERM 4196 3823606 - 3823620 + g 77 -11.4 -3.3506 | overlap 3823619 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3425 3824709 - 3823687 - | transposase for insertion sequence IS100 TERM 4197 3824731 - 3824713 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_3426 3824799 - 3825350 + | putative acetyltransferase TERM 4198 3825497 - 3825471 - f 91 -8 -4.8048 | opp_overlap 3825472, overlap 3825472 TGTCTACACCAAAAA CCAAGCTGCCTA TAA TATGCAGCTTGT TTCTTATCTGGAGTT TERM 4199 3825472 - 3825496 + F 100 -11.5 -4.39329 | opp_overlap 3825471 3825472 GTCTACACCAAAAAC CAAGCTGCCTA TAA TATGCAGCTTG TTTCTTATCTGGAGT TERM 4200 3825496 - 3825472 - f 89 -11.5 -3.47806 | opp_overlap 3825472, overlap 3825471 GTCTACACCAAAAAC CAAGCTGCCTA TAA TATGCAGCTTG TTTCTTATCTGGAGT TERM 4201 3825691 - 3825667 - g 73 -5.7 -4.55093 | TGACAGAAGAAGAAA TCGTTAAACTC AAA GGGATTAACGA AGACCTTTCATTAGA TERM 4202 3826010 - 3825996 - g 100 -8.6 -5.5604 | opp_overlap 3825996 CTAATGAAGAAAAAA GGATTC CCG GAATCC TATGATATGCATAAT YPA_3427 3825561 - 3826511 + | pantothenate kinase TERM 4203 3826519 - 3826536 + T 71 -9.9 -2.63723 | opp_overlap 3826516 3826513 3826509, overlap 3826518 GAAAATAATCTATAC GGGAGAT AGTT ATCTCCC ATTAATTAATCAGAC YPA_3428 3827505 - 3826546 - | biotin--protein ligase murB 3828539 - 3827502 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 4204 3828984 - 3828966 - R 100 -8.1 -5.24989 | opp_overlap 3828966 3828958 GCACACAGCAAAAAA CCCACGC TTTGG GCATGGG GTCTTGGCTTTATTT TERM 4205 3829223 - 3829213 - R 74 -6.8 -4.27316 | opp_overlap 3829213 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4206 3830335 - 3830346 + r 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4207 3830382 - 3830408 + r 70 -9.4 -2.75844 | opp_overlap 3830358 3830360, overlap 3830381 3830384 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4208 3830842 - 3830860 + r 82 -10.3 -3.57798 | overlap 3830835 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG hemG 3835218 - 3834685 - | protoporphyrinogen oxidase YPA_3431 3836691 - 3835240 - | potassium transporter TERM 4209 3836160 - 3836171 + g 81 -5.8 -4.95302 | opp_overlap 3836160 TAGCCGTTTCAGCAA TGCG GGGC CGCA TTTTATTATCTTTCA TERM 4210 3836451 - 3836432 - G 95 -5 -5.55769 | TCTGAGAATAAAAAA GGTAATGC CCCG ACACTACC CAACACCGTCCAAAA YPA_3432 3837207 - 3836731 - | hypothetical protein TERM 4211 3837202 - 3837178 - G 83 -9.9 -4.16842 | opp_overlap 3837181, overlap 3837180 3837181 GGGACCGGCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4212 3837200 - 3837180 - G 85 -12.5 -3.68324 | opp_overlap 3837181, overlap 3837178 3837181 GACCGGCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4213 3837199 - 3837181 - G 88 -16 -2.80512 | opp_overlap 3837181, overlap 3837180 3837178 ACCGGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4214 3837181 - 3837199 + g 100 -16 -4.8048 | opp_overlap 3837181 3837180 3837178 ACCGGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_3433 3837738 - 3837280 - | transposase for the IS1541 insertion element TERM 4215 3837869 - 3837851 - R 100 -16 -3.07307 | opp_overlap 3837851 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 4216 3837851 - 3837869 + r 100 -16 -4.36914 | opp_overlap 3837851 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC YPA_3434 3838052 - 3837843 - | hypothetical protein TERM 4217 3837908 - 3837889 - G 100 -11.4 -4.77165 | opp_overlap 3837887 3837883 CTGGGCACAACAAAA GCCCAGCA ATGA TGCCGGGC CGTTGGATGTTGTTG YPA_3435 3839383 - 3838052 - | proline dipeptidase TERM 4218 3839296 - 3839263 - G 74 -2.6 -5.1356 | overlap 3839264 3839265 GGTCATCAAGAAAAA GCCGCTG-TAATTCAC CAGA GTGAATCAGCAACG-C ATCTAATTGATGACG TERM 4219 3839429 - 3839455 + H 79 -8 -4.31835 | opp_overlap 3839430, overlap 3839430 TTTTTATCTTATCAT AGTCACCGAAAC CAT GTTTCGATGACG TTTATTCTACAAATT TERM 4220 3839430 - 3839454 + H 84 -11.5 -3.18378 | opp_overlap 3839430, overlap 3839429 TTTTATCTTATCATA GTCACCGAAAC CAT GTTTCGATGAC GTTTATTCTACAAAT TERM 4221 3839454 - 3839430 - H 93 -13.7 -2.79796 | opp_overlap 3839429 3839430 TTTTATCTTATCATA GTCACCGAAAC CAT GTTTCGATGAC GTTTATTCTACAAAT TERM 4222 3839972 - 3839989 + G 76 -8.5 -4.1899 | opp_overlap 3839961 3839960, overlap 3839964 AACTGCACCAGTGGC TGGTGTT CGCC AACACCA TTTTCAATCGACTGG TERM 4223 3841173 - 3841160 - g 74 -8.1 -4.05033 | opp_overlap 3841159 3841156 CTTACGCTACACAAA TGGGG AAAA CCCCA ATTGTTGTCAATGAT TERM 4224 3841858 - 3841870 + G 70 -9.1 -3.50335 | AGTTATTATCCTGTG GCAGC AGC GCTGC TTGATGTTTCTACCA fadB 3839710 - 3841899 + | multifunctional fatty acid oxidation complex subunit alpha TERM 4225 3841954 - 3841972 + G 79 -8 -4.33274 | TGCGTACACCGATGG GCCGCTCC AAA GGGGGGGC TTTTCGTCATGTACG fadA 3841911 - 3843074 + | 3-ketoacyl-CoA thiolase TERM 4226 3843202 - 3843220 + T 73 -8.8 -3.56814 | overlap 3843205 TTTAGTTGCTATTTC CCCGCC GGTCAGA GGCGGG CTTTTTATCGCTTTT TERM 4227 3843205 - 3843221 + T 82 -5.7 -4.97402 | overlap 3843202 AGTTGCTATTTCCCC GCCGGTC AGA GGCGGGC TTTTTATCGCTTTTA fre 3843935 - 3843234 - | FMN reductase YPA_3439 3845486 - 3843990 - | 3-octaprenyl-4-hydroxybenzoate decarboxylase rfaH 3845734 - 3846222 + | transcriptional activator RfaH TERM 4228 3846310 - 3846272 - T 73 -8.9 -3.56273 | opp_overlap 3846276 3846284, overlap 3846273 3846276 CTCATCATTATAGAA TTCATTCAGATAGGCGC AGTTA GTGCCTATCTGAATGCT GTGACTCTTAGTTAT TERM 4229 3846309 - 3846273 - T 88 -12.4 -2.73443 | opp_overlap 3846276 3846284, overlap 3846272 3846276 TCATCATTATAGAAT TCATTCAGATAGGCGC AGTTA GTGCCTATCTGAATGC TGTGACTCTTAGTTA TERM 4230 3846306 - 3846276 - T 88 -12.7 -2.64051 | opp_overlap 3846276 3846284, overlap 3846273 3846272 TCATTATAGAATTCA TTCAGATAGGCGC AGTTA GTGCCTATCTGAA TGCTGTGACTCTTAG TERM 4231 3846276 - 3846306 + T 100 -14.9 -2.66787 | opp_overlap 3846276 3846273 3846272, overlap 3846284 TCATTATAGAATTCA TTCAGATAGGCGC AGTTA GTGCCTATCTGAA TGCTGTGACTCTTAG YPA_3441 3847354 - 3846332 - | delta-aminolevulinic acid dehydratase TERM 4232 3847394 - 3847374 - R 86 -10.3 -3.75153 | opp_overlap 3847373 3847372 3847374 TTCTCCTAACTCAAA CCAGCCGGA AAA CCCGGCGGG CGTTTTCATCAGTTT YPA_3442 3847704 - 3847369 - | hypothetical protein YPA_3443 3848522 - 3847743 - | transposase/IS protein TERM 4233 3848441 - 3848455 + g 77 -11.4 -3.3506 | overlap 3848454 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3444 3849544 - 3848522 - | transposase for insertion sequence IS100 TERM 4234 3849566 - 3849548 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 4235 3850045 - 3850070 + r 100 -13.4 -4.09805 | opp_overlap 3850045 ATCCCTTTCAATTAA TATGCCAGCG CTTTCA CGCTGGCATA TTTACTTATTACTGC TERM 4236 3850070 - 3850045 - R 100 -14.1 -3.33815 | opp_overlap 3850045 ATCCCTTTCAATTAA TATGCCAGCGC TTTC ACGCTGGCATA TTTACTTATTACTGC YPA_3445 3850318 - 3850079 - | hypothetical protein YPA_3446 3850531 - 3851823 + | hypothetical protein YPA_3447 3851816 - 3853930 + | hypothetical protein TERM 4237 3854133 - 3854162 + F 100 -13.7 -3.28712 | opp_overlap 3854138, overlap 3854138 ATCGGCGCACCCACA GAAAAGGGCGATA CTGA TATCGCCCTTTAC TTGTGCCCAGAAAAC TERM 4238 3854138 - 3854157 + F 100 -12.2 -3.9941 | opp_overlap 3854138, overlap 3854133 CGCACCCACAGAAAA GGGCGATA CTGA TATCGCCC TTTACTTGTGCCCAG TERM 4239 3854157 - 3854138 - f 100 -12.2 -4.55287 | opp_overlap 3854138 3854133 CGCACCCACAGAAAA GGGCGATA CTGA TATCGCCC TTTACTTGTGCCCAG TERM 4240 3854177 - 3854195 + F 100 -16 -3.07307 | opp_overlap 3854177 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4241 3854195 - 3854177 - f 100 -16 -4.36914 | opp_overlap 3854177 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3448 3854308 - 3854766 + | transposase for the IS1541 insertion element TERM 4242 3854840 - 3854872 + T 100 -11.3 -4.44046 | opp_overlap 3854847, overlap 3854844 3854846 3854847 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATTTCCGCTGAC TERM 4243 3854844 - 3854868 + T 100 -9.9 -4.78326 | opp_overlap 3854847, overlap 3854840 3854846 3854847 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATTTCCGC TERM 4244 3854846 - 3854866 + T 100 -12.5 -3.99693 | opp_overlap 3854847, overlap 3854844 3854840 3854847 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATTTCC TERM 4245 3854865 - 3854847 - T 100 -16 -4.8048 | opp_overlap 3854846 3854844 3854840 3854847 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATTTC TERM 4246 3854847 - 3854865 + T 100 -16 -2.98189 | opp_overlap 3854847, overlap 3854846 3854844 3854840 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATTTC YPA_3449 3855213 - 3854974 - | hypothetical protein YPA_3450 3855841 - 3856689 + | glycerol uptake facilitator protein TERM 4247 3857682 - 3857672 - g 79 -5.4 -5.0538 | GGGCATGGCAAAAAA TACC TAC GGTA CGGGTTGCTTCCTGC TERM 4248 3858359 - 3858348 - g 74 -3.6 -5.01732 | AAGGGCTGGAAAAAA GCAG TGGC CCGC GCCCGGGATTGGGAA YPA_3451 3856866 - 3858389 + | hypothetical protein TERM 4249 3858486 - 3858464 - f 80 -9.1 -3.93578 | opp_overlap 3858464, overlap 3858459 TTAAACCAAACACAA CGCGCTATC CCCCC GATGGCGCG TTTTTCGTTGTGAGA TERM 4250 3858464 - 3858486 + F 100 -11.3 -4.93365 | opp_overlap 3858464 3858459 TTAAACCAAACACAA CGCGCTATC CCCCC GATGGCGCG TTTTTCGTTGTGAGA TERM 4251 3859374 - 3859360 - g 73 -9.2 -3.70446 | overlap 3859361 CGACAGTGAAGATAA CCGCCG CAT CGGCGA ACAAGAGTTATTACG glpX 3858626 - 3859636 + | fructose 1,6-bisphosphatase II TERM 4252 3859660 - 3859689 + F 70 -7.8 -3.68619 | GCAATCATTTTTATT CTGCACGGCGCT CGTAAA AGCGCCGTAAAG TTTACATCAGTTAGA YPA_3453 3859791 - 3860537 + | ferredoxin-NADP reductase YPA_3454 3861339 - 3860878 - | hypothetical protein YPA_3455 3861460 - 3862095 + | hypothetical protein TERM 4253 3862166 - 3862180 + F 73 -10 -3.03309 | opp_overlap 3862166, overlap 3862148 TGTTGGACAGGTAAA CTGCCT GTC AGGCAG TCATTATTATTGACC TERM 4254 3862180 - 3862166 - f 80 -10 -3.70902 | opp_overlap 3862166 3862148 TGTTGGACAGGTAAA CTGCCT GTC AGGCAG TCATTATTATTGACC tpiA 3862224 - 3862991 + | triosephosphate isomerase TERM 4255 3863029 - 3863050 + TF 84 -6.5 -5.03994 | opp_overlap 3863023 3863021 3863029, overlap 3863023 GGTACAACACAAAAA CCGGCGT AAATAAAA GCGCCGG TTTTTATATATCCAA TERM 4256 3863050 - 3863029 - Tf 85 -5.8 -5.1523 | opp_overlap 3863029 3863023, overlap 3863023 3863021 GGTACAACACAAAAA CCGGCG TAAATAAAAG CGCCGG TTTTTATATATCCAA YPA_3457 3864458 - 3863223 - | transcriptional regulator TERM 4257 3864821 - 3864794 - gH 72 -7.6 -3.76369 | gap 1 AAAGAGTAAAAGCAA GCCGCCACAC-CG AAG CGCAAGCGGCGGC AAATGTTCTTGGTGC YPA_3458 3864400 - 3865332 + | hypothetical protein TERM 4258 3865609 - 3865619 + G 91 -6.8 -5.15634 | CGCCGACCTCCGAAT GCCA TGA TGGC TTTTTTGGTGACCTG YPA_3459 3865329 - 3866042 + | hypothetical protein YPA_3460 3866108 - 3867535 + | putative membrane transport protein TERM 4259 3867580 - 3867616 + F 71 -8.8 -3.39908 | gap 1, opp_overlap 3867573, overlap 3867579 3867576 3867581 ATTTAAACGTCGCTT AGCCACTGAAGACAAGG TCAT CCT-GTTTTCGGTGGCC TGTCTTTTGGCGCAA TERM 4260 3867581 - 3867615 + F 88 -12.3 -2.63623 | gap 1, opp_overlap 3867573, overlap 3867580 3867579 3867576 TTTAAACGTCGCTTA GCCACTGAAGACAAGG TCAT CCT-GTTTTCGGTGGC CTGTCTTTTGGCGCA YPA_3461 3867653 - 3868429 + | hypothetical protein TERM 4261 3868551 - 3868514 - T 77 -8.5 -3.91897 | gap 1, opp_overlap 3868523 CGCGGTAGCGATAAA CGTTCAACACCACAACAT ACA ACGATGTGGTGTTGG-CG ATAAAGCGGTTGGTA YPA_3462 3869668 - 3868679 - | sulfate transporter subunit TERM 4262 3869864 - 3869812 - R 100 -9.5 -5.00138 | gap 3, opp_overlap 3869812 GACCGAAAGTAAAAA GCCCTCGTAATGTAAACTG--CCCAA CTTT TTGGGATCAGTTCA-ATTTCGAGGGC TTGATGAATGAGCGA YPA_3463 3870872 - 3869889 - | 6-phosphofructokinase fieF 3871992 - 3871090 - | ferrous iron efflux protein F TERM 4263 3872269 - 3872291 + r 74 -7 -4.2535 | CAGAGAATTTCTGGT CTGTGGAATA CCG TATTCCGCCG TTTTCACTATGGTCT YPA_3465 3873513 - 3872554 - | hypothetical protein YPA_3466 3873734 - 3873558 - | hypothetical protein YPA_3467 3873830 - 3874033 + | hypothetical protein TERM 4264 3874134 - 3874116 - T 100 -14.6 -5.71638 | CAATAAGCAAAAAAA GCCCTCCA TCA TGGAGGGC GAAAGACAGGGATGG cpxP 3874679 - 3874191 - | periplasmic stress adaptor protein CpxP TERM 4265 3874535 - 3874550 + g 76 -6.8 -4.49316 | CATCAAACATGTTAT GGTGAC CGCG GTCGCC TTTCTTGTTCATCAT YPA_3469 3874853 - 3875551 + | DNA-binding transcriptional regulator CpxR TERM 4266 3876562 - 3876573 + G 76 -7.2 -4.35644 | overlap 3876547 3876546 GTCACGGCACCTCCG GGGC CATG GCCC TTATTTTGTAATCCT TERM 4267 3876785 - 3876772 - g 70 -9.5 -3.32498 | TATCGTACAGATGAA GCCCG AGAT CGGGC GTCGGGAGGAACAGG cpxA 3875548 - 3876924 + | two-component sensor protein YPA_3471 3878037 - 3876973 - | bifunctional regulatory protein/DNA repair protein TERM 4268 3877719 - 3877709 - G 80 -2.4 -5.50723 | CGATGAAAATAAAAA GTGC TAA GCCC CAGTTGAGCTGCCAA YPA_3472 3878226 - 3878714 + | putative methyltransferase cysE 3879658 - 3878837 - | serine acetyltransferase gpsA 3880943 - 3879924 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 4269 3880330 - 3880318 - G 74 -7.7 -4.26076 | overlap 3880319 3880322 GCATTCGCACCAAAA CCGAT GCC ATCGG ACATACCTGCACCGA YPA_3475 3881419 - 3880943 - | preprotein translocase subunit SecB TERM 4270 3881532 - 3881512 - R 82 -10.4 -3.68827 | CACTGACGAGTTAAA GCAGTGGG TCTAG CCCACCGC GCGCATCCAGGGCGT YPA_3476 3881755 - 3881507 - | glutaredoxin 3 YPA_3477 3882308 - 3881874 - | hypothetical protein TERM 4271 3883126 - 3883138 + G 70 -9.1 -3.6269 | opp_overlap 3883125 3883126, overlap 3883124 AGCTGGCGGCTAAAC GCGGT GCA ACCGC TATTTATCTGCATGC TERM 4272 3884088 - 3884059 - g 70 -8.6 -3.74747 | gap 1 GCAACGCTGAGCAAA TGCGTGACCCGGC AACTG GCCAGG-CACACA CCGCCCATACCAGCC YPA_3478 3882705 - 3884252 + | phosphoglyceromutase TERM 4273 3884309 - 3884351 + G 77 -12.1 -3.11634 | opp_overlap 3884306, overlap 3884313 AACTACGAAAGATGC CGTCTCTGACGGTAGAGAG TCTCC CTCTCTGCTGTCAGATAAG TTGAGTCGTCTACCG TERM 4274 3884313 - 3884347 + G 86 -15.9 -2.55722 | opp_overlap 3884306, overlap 3884309 ACGAAAGATGCCGTC TCTGACGGTAGAGAG TCTCC CTCTCTGCTGTCAGA TAAGTTGAGTCGTCT TERM 4275 3884552 - 3884538 - g 95 -2.1 -6.13503 | CAGCAACAAAAAAAA CAACG CAGTT CATTG CTGGATCAACTAAAA TERM 4276 3885371 - 3885393 + G 71 -6.2 -4.28548 | opp_overlap 3885364 3885375, overlap 3885374 TGAAGGCAGCGAAGT CAAAGCCATC GCC GATGGCCGTG TTTTACTGGCTGACT TERM 4277 3885389 - 3885375 - g 77 -10 -3.76952 | opp_overlap 3885374 3885371, overlap 3885364 GGCAGCGAAGTCAAA GCCATC GCC GATGGC CGTGTTTTACTGGCT YPA_3479 3884262 - 3885632 + | hypothetical protein YPA_3480 3885656 - 3886093 + | hypothetical protein YPA_3481 3886090 - 3886590 + | hypothetical protein TERM 4278 3886715 - 3886675 - T 86 -11.3 -3.3506 | opp_overlap 3886666, overlap 3886712 CGTAAATCCTGACAA GGGCTTGGTATCGCA GCGGGTAGTTT TGCAACACCAAGCCC GAAGGGGATAAACTA tdh 3887753 - 3886728 - | L-threonine 3-dehydrogenase YPA_3483 3888974 - 3887763 - | 2-amino-3-ketobutyrate coenzyme A ligase rfaD 3889220 - 3890152 + | ADP-L-glycero-D-mannoheptose-6-epimerase YPA_3485 3890183 - 3891247 + | ADP-heptose:LPS heptosyltransferase II YPA_3486 3891247 - 3892212 + | ADP-heptose:LPS heptosyl transferase I YPA_3487 3892524 - 3893909 + | 3-deoxy-D-manno-octulosonic-acid transferase YPA_3488 3893910 - 3894692 + | lipopolysaccharide core biosynthesis glycosyl transferase coaD 3894689 - 3895168 + | phosphopantetheine adenylyltransferase YPA_3490 3895983 - 3895174 - | formamidopyrimidine-DNA glycosylase TERM 4279 3896024 - 3896051 + r 95 -12.8 -3.16683 | opp_overlap 3896030, overlap 3896030 TGTACTTTATATAAT AAAAAACCCGGC CAAG GCCGGGTTTTTC TTAGTCCGCTAAAAT TERM 4280 3896045 - 3896030 - R 100 -11.8 -5.60689 | opp_overlap 3896024 3896030 TTATATAATAAAAAA CCCGGC CAAG GCCGGG TTTTTCTTAGTCCGC TERM 4281 3896030 - 3896045 + r 100 -11.8 -5.1356 | opp_overlap 3896030, overlap 3896024 TTATATAATAAAAAA CCCGGC CAAG GCCGGG TTTTTCTTAGTCCGC TERM 4282 3896059 - 3896080 + r 83 -8.9 -4.07877 | GGTTTTTCTTAGTCC GCTAAAATT ACTT AATTTTAGC TTCTTTATAGAGTAC rpmG 3896233 - 3896066 - | 50S ribosomal protein L33 rpmB 3896481 - 3896245 - | 50S ribosomal protein L28 radC 3897412 - 3896744 - | DNA repair protein RadC TERM 4283 3897778 - 3897789 + G 71 -7.2 -4.04209 | CGCTACAGGCAGTCT CGGG CTAT CCCG TTTCTGATGATTTGC YPA_3494 3897492 - 3898823 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase dut 3898801 - 3899259 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 4284 3899328 - 3899301 - f 91 -12 -3.56562 | gap 1, opp_overlap 3899296 AAAGCTATCACATAA GCCGC-CTGGGCA TTG TTCCCAGAGCGGC CGGTGTTTGGGTTTT TERM 4285 3899644 - 3899627 - g 76 -4.8 -4.90906 | CTACAAGATGAAAAA GAGACG TTTAAT CGCCTC CGCTTAATCCTGCTG TERM 4286 3899847 - 3899812 - g 72 -4 -4.82901 | opp_overlap 3899828, overlap 3899828 3899829 CCTTCGTGAGAAAAA GCTGCGTGATGGACAA GGCT TTATCCATGATGAAGC GTTACTGGCCACCCA slmA 3899381 - 3899977 + | nucleoid occlusion protein TERM 4287 3900085 - 3900028 - T 100 -21.6 -3.68569 | gap 1, opp_overlap 3900039 3900081, overlap 3900030 3900031 3900051 AAGACATAGAGAGAA CAGCGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCGG-G ATTACCCCATGTTAT TERM 4288 3900084 - 3900030 - T 100 -25.3 -3.40967 | opp_overlap 3900039 3900081, overlap 3900028 3900031 3900051 GACATAGAGAGAACA GCGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCGG GATTACCCCATGTTA TERM 4289 3900083 - 3900031 - T 100 -28.8 -2.63857 | opp_overlap 3900039 3900081, overlap 3900030 3900028 3900051 ACATAGAGAGAACAG CGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCG GGATTACCCCATGTT TERM 4290 3900039 - 3900075 + T 100 -15.2 -3.35867 | opp_overlap 3900031 3900030 3900028 3900051 AGAACAGCGAATCAA GCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGC TTGATTCGGGATTAC TERM 4291 3900063 - 3900051 - T 77 -6.2 -4.68424 | opp_overlap 3900039, overlap 3900031 3900030 3900028 CAAGCTACGCAAAAA GGGC AAACG GCCC TCTTGGCGTAGCTTG pyrE 3900759 - 3900112 - | orotate phosphoribosyltransferase TERM 4292 3900917 - 3900901 - R 100 -9.4 -5.41143 | opp_overlap 3900898 TAGCGGGTAAAAAAA GGCGAC TATCC GTCGCC TAATAAATTTATGAT rph 3901642 - 3900926 - | ribonuclease PH YPA_3499 3901769 - 3902632 + | hypothetical protein TERM 4293 3902696 - 3902665 - f 100 -15.9 -5.5208 | opp_overlap 3902668 3902672 CCAGAACACAAAAAA CCAGCAAGCTCGC TAATCT GCGGGCTTGCTGG TTCGCAGGAAAAGCC TERM 4294 3902668 - 3902693 + F 88 -12.6 -2.70932 | opp_overlap 3902665, overlap 3902672 GAACACAAAAAACCA GCAAGCTCGC TAATCT GCGGGCTTGC TGGTTCGCAGGAAAA TERM 4295 3903107 - 3903128 + G 71 -7.3 -4.10566 | CTGGCTGCGGGTCGC CGCCAAATG GATA TGTTTGGCG TTATTATTATTGCCT YPA_3500 3903035 - 3903658 + | hypothetical protein ligB 3905374 - 3903671 - | NAD-dependent DNA ligase LigB TERM 4296 3904121 - 3904109 - G 70 -3.3 -4.8543 | CAAGCGGGATAAAAA CTGAG GTT CACAG CCATGTGGTAAGCGT TERM 4297 3905008 - 3905031 + g 71 -7.4 -4.02206 | gap 1 AGAGATTTTTCCGCC CCGCCATCCAC CTT GTG-AGGGCGG TTTCATCTTTGAGTT TERM 4298 3905842 - 3905830 - g 70 -9.1 -3.54408 | opp_overlap 3905830, overlap 3905826 GGGCAGGGAAATCAA GCCTG ATT CAGGC TTTGTTAAAAACACA TERM 4299 3905830 - 3905842 + G 79 -9.1 -4.15044 | opp_overlap 3905830 3905826 GGGCAGGGAAATCAA GCCTG ATT CAGGC TTTGTTAAAAACACA gmk 3905775 - 3906398 + | guanylate kinase rpoZ 3906453 - 3906728 + | DNA-directed RNA polymerase subunit omega TERM 4300 3907304 - 3907286 - g 70 -4.5 -4.68593 | opp_overlap 3907286 TTCATCATTTAAAAA CCGAGCT GGAAG AGCTGGG TTTTGAAGCACTCTA TERM 4301 3907948 - 3907970 + G 76 -7.6 -4.28977 | opp_overlap 3907948, overlap 3907949 CGCATTGTGGAATTA CCGGCTGGTG CCA CACCGGTCGA TTTTGCCTATGTTGT TERM 4302 3907949 - 3907969 + G 74 -11.1 -3.16302 | opp_overlap 3907948, overlap 3907948 GCATTGTGGAATTAC CGGCTGGTG CCA CACCGGTCG ATTTTGCCTATGTTG YPA_3504 3906748 - 3908856 + | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase TERM 4303 3909243 - 3909229 - g 80 -4.2 -5.14563 | TGGGTCAGGAAAAAA CCGGTA TTT CACCAG AAGCGCTGGCACTGG YPA_3505 3908862 - 3909554 + | tRNA guanosine-2'-O-methyltransferase TERM 4304 3911381 - 3911368 - g 71 -5.2 -4.45544 | CGCCATTAAGTAAAA CCGC TCAAAT GCGG TTGCAGGTATTACGT YPA_3506 3909555 - 3911636 + | ATP-dependent DNA helicase RecG TERM 4305 3911819 - 3911793 - T 86 -10.1 -3.9749 | gap 1, opp_overlap 3911802, overlap 3911794 3911809 AGGCAGAAGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4306 3911820 - 3911794 - T 73 -10.1 -2.97771 | gap 1, opp_overlap 3911802, overlap 3911793 3911809 GGCAGAAGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4307 3911898 - 3911913 + T 78 -9 -3.81146 | TTGTCAATAACCTCA GCCTCA TTCA TGAGGC TTCTTAATTCCCAGC YPA_3507 3913216 - 3912002 - | sodium/glutamate symport carrier protein TERM 4308 3913831 - 3913810 - g 73 -2.9 -5.00616 | GCTGGCGCTAAAAAA CGGTGGG GCAGATAT CCCAACG ATGATGGCGGCGCTG TERM 4309 3914384 - 3914372 - g 75 -9.1 -3.88498 | opp_overlap 3914371 CCGTTATATATGAAA CGCCT AAA AGGCG GTGTACTGGCCAATG YPA_3508 3913421 - 3914839 + | putative membrane permease TERM 4310 3914865 - 3914890 + F 100 -6.9 -5.9873 | gap 1, opp_overlap 3914865 AACACATCACTGAAA TGGTCGGTCATT AAT GATG-CCGGCCA TTTTTTTTATGGTCC YPA_3509 3914987 - 3916696 + | exported protein TERM 4311 3916792 - 3916811 + T 79 -8.6 -4.11216 | opp_overlap 3916792 TCGCCCGGCAGCAAA TCACTGGC TCAT GTCAGTGA TTTTAAGGGTACCAG YPA_3510 3917754 - 3916831 - | hypothetical protein TERM 4312 3918002 - 3918020 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3511 3918024 - 3919046 + | transposase for insertion sequence IS100 TERM 4313 3919127 - 3919113 - g 77 -11.4 -3.3506 | overlap 3919104 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3512 3919046 - 3919825 + | transposase/IS protein YPA_3513 3920336 - 3919899 - | D-tyrosyl-tRNA deacylase rbn 3921287 - 3920343 - | ribonuclease BN YPA_3515 3921914 - 3921324 - | phosphatase TERM 4314 3922214 - 3922190 - R 100 -14.3 -3.75738 | TAGGAGGAGTAAGAA CTCAGGGCGCC TTG AGCGCCCTAAG TATCAACAATGCAAA YPA_3516 3924059 - 3922236 - | putative GTPase TERM 4315 3925408 - 3925398 - g 71 -6.8 -4.13945 | ACCTTTATGCCAAAA CCGA TGT TCGG CGATAACGGCTCAGG glnA 3924621 - 3926030 + | glutamine synthetase TERM 4316 3926131 - 3926148 + F 100 -11.3 -5.24129 | CCGTGGAAACTTTTG GCCCATC TTAG GATGGGC TTTTTTGTGCCCAGA TERM 4317 3926185 - 3926167 - f 100 -16 -4.36914 | opp_overlap 3926167 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4318 3926167 - 3926185 + F 100 -16 -3.07307 | opp_overlap 3926167 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3518 3926298 - 3926756 + | transposase for the IS1541 insertion element TERM 4319 3926834 - 3926858 + F 93 -9.9 -4.33851 | opp_overlap 3926837, overlap 3926836 3926837 3926850 3926851 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCTCCACTTT TERM 4320 3926836 - 3926856 + F 100 -12.5 -3.76219 | opp_overlap 3926837, overlap 3926834 3926837 3926850 3926851 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCTCCACT TERM 4321 3926837 - 3926855 + F 100 -16 -2.85008 | opp_overlap 3926837, overlap 3926836 3926834 3926850 3926851 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTCCAC TERM 4322 3926855 - 3926837 - f 100 -16 -4.8048 | opp_overlap 3926837 3926836 3926834 3926850 3926851 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTCCAC glnL 3926993 - 3928042 + | nitrogen regulation protein NR(II) TERM 4323 3929080 - 3929069 - g 76 -4.4 -4.98531 | overlap 3929062 CGTGGAAAGCAAAAA TCTG CATC CAGA GACCGAAGCGGCGCT glnG 3928050 - 3929462 + | nitrogen regulation protein NR(I) TERM 4324 3929477 - 3929510 + T 83 -11.8 -2.80994 | gap 1, opp_overlap 3929489 3929496 GTTCCCGCCAGATGG TCACCCTCAAGAGCG ATAAC CGCACT-GAGGGTGA TATCGTCAGATTACA YPA_3521 3930889 - 3929516 - | coproporphyrinogen III oxidase TERM 4325 3930093 - 3930119 + g 70 -8.6 -3.70102 | opp_overlap 3930092 TGCAAAATATCCAAC CGTTGCTCCGCC GTT GGCAGATCAGCG TCTTTGATTTTACGT YPA_3522 3931638 - 3931072 - | hypothetical protein TERM 4326 3931837 - 3931785 - H 100 -13.6 -3.99405 | gap 1, opp_overlap 3931801 3931823, overlap 3931801 GGAATCTAGCAGAAA GAAGAGAAAGAAAAAAGGCGGCAGG TTAA CCTGTCGCCTTTTTTCGCAC-CTTC TGCGGAAGGATATCC TERM 4327 3931801 - 3931822 + H 100 -13.7 -5.03145 | opp_overlap 3931785 3931801 AAGAGAAAGAAAAAA GGCGGCAGG TTAA CCTGTCGCC TTTTTTCGCACCTTC TERM 4328 3931822 - 3931801 - H 100 -11.5 -5.7827 | opp_overlap 3931801, overlap 3931785 AAGAGAAAGAAAAAA GGCGGCAGG TTAA CCTGTCGCC TTTTTTCGCACCTTC YPA_3523 3932383 - 3933033 + | GTPase EngB TERM 4329 3933211 - 3933179 - T 100 -11.3 -3.92143 | opp_overlap 3933186, overlap 3933183 3933185 3933186 CAAAATCCCCATAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 4330 3933207 - 3933183 - T 100 -9.9 -4.55697 | opp_overlap 3933186, overlap 3933179 3933185 3933186 ATCCCCATAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4331 3933205 - 3933185 - T 100 -12.5 -3.88703 | opp_overlap 3933186, overlap 3933183 3933179 3933186 CCCCATAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4332 3933204 - 3933186 - T 100 -16 -2.92499 | opp_overlap 3933186, overlap 3933185 3933183 3933179 CCCATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4333 3933186 - 3933204 + T 100 -16 -4.8048 | opp_overlap 3933186 3933185 3933183 3933179 CCCATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_3524 3933743 - 3933285 - | transposase for the IS1541 insertion element TERM 4334 3933874 - 3933856 - R 100 -16 -3.07307 | opp_overlap 3933856 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4335 3933856 - 3933874 + r 100 -16 -4.36914 | opp_overlap 3933856 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4336 3933891 - 3933921 + r 76 -11.1 -2.62184 | opp_overlap 3933893 TTTCTGGGCACAAAA AACGCCCCAGTCA ATAAA TGACTGGGGCGGC TAATATACAGCCAAA TERM 4337 3933919 - 3933893 - R 100 -18.1 -5.24129 | opp_overlap 3933891 TCTGGGCACAAAAAA CGCCCCAGTCA ATAAA TGACTGGGGCG GCTAATATACAGCCA YPA_3525 3936950 - 3934152 - | DNA polymerase I TERM 4338 3935616 - 3935633 + g 83 -9.9 -4.19817 | opp_overlap 3935605 ATAAGACTCCAGCAT GGTATCG AAAG CGATACC TTTTAGATCGATACC TERM 4339 3936803 - 3936770 - G 100 -10.5 -4.72272 | gap 1 CTTTTGCATCAAAAA CTACTGCAACAT-GAC TTG GTCGATATTGCAGCAG CAGACTGCGTAGCAT TERM 4340 3937425 - 3937409 - R 100 -6.5 -6.32017 | opp_overlap 3937409 3937408 AATAAATAAAAAAAA GGGGC AACAAAA GCCCC CTCTTTATGTACTAA YPA_3526 3938065 - 3937442 - | periplasmic protein disulfide isomerase I YPA_3527 3939079 - 3938093 - | serine/threonine protein kinase YPA_3528 3939428 - 3939159 - | hypothetical protein mobA 3939582 - 3940169 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 4341 3940186 - 3940206 + G 88 -14.1 -3.44051 | opp_overlap 3940184 GAACTACAAGTCACC GCCGCTATT AGG AATAGCGGC TTATAGTGGTACAGG TERM 4342 3940382 - 3940368 - g 78 -10 -3.87815 | opp_overlap 3940370 CTGGAGCGCTACAAA CACTGG TCG CCAGTG ATTGCCGTTGGGCAC YPA_3530 3940169 - 3940699 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 4343 3940783 - 3940762 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPA_3531 3941965 - 3940757 - | putative transposase TERM 4344 3942423 - 3942457 + H 95 -9.2 -4.50627 | opp_overlap 3942430 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 4345 3942450 - 3942430 - H 100 -10.4 -4.8048 | opp_overlap 3942423 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 4346 3942688 - 3942678 - H 74 -6.8 -4.27316 | opp_overlap 3942678 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4347 3943800 - 3943811 + H 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4348 3943847 - 3943873 + H 70 -9.4 -2.75844 | opp_overlap 3943823 3943825, overlap 3943846 3943849 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4349 3944307 - 3944325 + H 82 -10.3 -3.57798 | overlap 3944300 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4350 3945763 - 3945800 + H 78 -5.7 -4.7629 | opp_overlap 3945763 3945757 3945766, overlap 3945766 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 4351 3945766 - 3945797 + H 78 -7.4 -4.47888 | opp_overlap 3945763 3945757 3945766, overlap 3945763 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA YPA_3532 3948050 - 3948250 + | hypothetical protein TERM 4352 3948242 - 3948260 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3533 3948264 - 3949286 + | transposase for insertion sequence IS100 TERM 4353 3949367 - 3949353 - g 77 -11.4 -3.3506 | overlap 3949344 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3534 3949286 - 3950065 + | transposase/IS protein YPA_3535 3950290 - 3950075 - | hypothetical protein TERM 4354 3950225 - 3950243 + g 100 -16 -4.36914 | opp_overlap 3950225 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4355 3950243 - 3950225 - G 93 -16 -3.07307 | opp_overlap 3950225 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4356 3950289 - 3950262 - G 100 -9.3 -5.24129 | gap 1, opp_overlap 3950266 TCTGGGCACAAAAAA TGGAGCAA-ACG ACGGA CGTCTTGCTCCA TTAAAATAAAGTAGG YPA_3536 3950713 - 3950327 - | nucleoside triphosphate pyrophosphohydrolase TERM 4357 3950796 - 3950772 - R 89 -7.2 -4.97888 | gap 1, overlap 3950776 AAAAAAACTTAAAAA TAAAGGGCGGT ATTA ACCGCCC-TCA GACTGCTGACAAACC TERM 4358 3950793 - 3950776 - R 100 -12.7 -4.92828 | overlap 3950772 AAACTTAAAAATAAA GGGCGGT ATTA ACCGCCC TCAGACTGCTGACAA TERM 4359 3950882 - 3950856 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 3950865, overlap 3950857 3950872 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4360 3950883 - 3950857 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 3950865, overlap 3950856 3950872 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4361 3950961 - 3950978 + r 100 -12.7 -4.21343 | opp_overlap 3950956 3950957, overlap 3950956 TTGTCAATAACCTCA GGGCGGT ATTA ACCGCCC TTTATCTATATTACA secA 3953722 - 3951008 - | preprotein translocase subunit SecA TERM 4362 3952606 - 3952616 + g 76 -6.8 -4.50661 | opp_overlap 3952606 3952605 GGAAAGTGATAGAAG CCAG TGT CTGG TTTTCATTCTGGATT TERM 4363 3953633 - 3953653 + g 70 -4.7 -4.65895 | overlap 3953636 AATATCAGGTTCCAT GCGGTTGAT GAC ATCAACTAC TTTTTGCATGCGGCG YPA_3538 3954333 - 3953800 - | SecA regulator SecM TERM 4364 3954873 - 3954836 - g 71 -11.4 -2.71731 | opp_overlap 3954826 GTGATCTTGGAACGA CTGGCTGCGTTGGC CGGAGAGGGT GCCAACGCAACCAA GCGTGATAAGTAGCT YPA_3539 3954362 - 3954886 + | hypothetical protein lpxC 3955988 - 3955053 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 4365 3955894 - 3955904 + g 79 -5.4 -5.04385 | GGCGCGGGTCGCATT GTCA GCG TGAC TTTTTTACCGGTGTG YPA_3541 3957224 - 3956073 - | cell division protein FtsZ TERM 4366 3956942 - 3956975 + g 72 -8.1 -3.85522 | overlap 3956944 TAAAGACCATATCCG CACCGTCAAGCGCTG CACG CAGAGCTTCACGGTC TTCTTCTGCTGAATT TERM 4367 3956944 - 3956973 + g 77 -10.7 -3.50808 | overlap 3956942 AAGACCATATCCGCA CCGTCAAGCGCTG CACG CAGAGCTTCACGG TCTTCTTCTGCTGAA ftsA 3958553 - 3957297 - | cell division protein FtsA YPA_3543 3959407 - 3958580 - | cell division protein FtsQ TERM 4368 3959034 - 3959046 + g 76 -7.7 -4.30014 | GCGAAGGGCACGTAC TCCAC CAG GTGGA TTTTAAGTTCATCCG TERM 4369 3959347 - 3959360 + g 70 -3.1 -4.82901 | gap 1 ATTGGCTCCCGTTAC TGC-GC CGG GCTGCA TTTTTCTCCGCCGCA ddl 3960329 - 3959409 - | D-alanine--D-alanine ligase murC 3961845 - 3960322 - | UDP-N-acetylmuramate--L-alanine ligase murG 3963005 - 3961935 - | N-acetylglucosaminyl transferase YPA_3547 3964204 - 3963002 - | cell division protein FtsW murD 3965520 - 3964204 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 4370 3964682 - 3964652 - G 79 -11.3 -3.55622 | gap 2 GTCAAGGCTTTCAAA CTGGATGCCCGTGGG ATA CCCACGG-CATC-AG CTAATGCCAGGGCGG mraY 3966605 - 3965523 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 3967975 - 3966599 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 3969459 - 3967972 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase YPA_3552 3971209 - 3969446 - | penicillin-binding protein 3 TERM 4371 3969982 - 3969966 - G 70 -8.7 -3.60098 | opp_overlap 3969966 3969968 AGCCCGTAGCCGAAA GAGAAGG TGG CCCTCTC TATGTCAGACCACCG TERM 4372 3971165 - 3971145 - G 74 -6.8 -4.31085 | opp_overlap 3971146, overlap 3971146 CACAGCAACGCAAAA CGCCAGCT AATAA AGCTGGCT TGTTCTTCCTGACGC TERM 4373 3971164 - 3971146 - G 71 -10.3 -3.17928 | opp_overlap 3971146, overlap 3971145 ACAGCAACGCAAAAC GCCAGCT AATAA AGCTGGC TTGTTCTTCCTGACG TERM 4374 3971146 - 3971164 + g 84 -10.3 -3.99374 | opp_overlap 3971146 3971145 ACAGCAACGCAAAAC GCCAGCT AATAA AGCTGGC TTGTTCTTCCTGACG YPA_3553 3971592 - 3971275 - | cell division protein FtsL mraW 3972551 - 3971589 - | S-adenosyl-methyltransferase MraW YPA_3555 3973012 - 3972554 - | cell division protein MraZ TERM 4375 3973664 - 3973690 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 3973653, overlap 3973659 3973665 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4376 3973665 - 3973691 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 3973653, overlap 3973659 3973664 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4377 3974493 - 3974505 + G 83 -5.5 -5.09173 | CAATGGTTATGGGGG TGGCC TAC GGCTA TTTTTTGGAATATTG YPA_3556 3974114 - 3974554 + | hypothetical protein TERM 4378 3974653 - 3974670 + T 89 -11.3 -3.47322 | opp_overlap 3974653 TGTCAGCAATCAAAA TCAGGGC GGGT GCCCTGA TTCGTTATAGTGAAC TERM 4379 3974670 - 3974653 - T 100 -11.3 -4.45544 | opp_overlap 3974653 TGTCAGCAATCAAAA TCAGGGC GGGT GCCCTGA TTCGTTATAGTGAAC YPA_3557 3975695 - 3974685 - | DNA-binding transcriptional regulator FruR TERM 4380 3975678 - 3975662 - G 70 -9.3 -3.53012 | opp_overlap 3975661 CCGTTGTGCGCGAAA CGCCCGC AAG GCGCGCG ATCTCATCCAGTTTC TERM 4381 3975744 - 3975731 - R 74 -6.7 -4.33165 | overlap 3975736 GTAAAGTGATGAAAA GCAGA GCGC TCTGC CGAGAGCCAGCATCC TERM 4382 3976126 - 3976094 - R 100 -11.3 -5.54403 | opp_overlap 3976101, overlap 3976100 3976101 AAAAAATAAGAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 4383 3976120 - 3976100 - R 100 -12.5 -4.13123 | opp_overlap 3976101, overlap 3976094 3976101 TAAGAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4384 3976101 - 3976119 + r 100 -16 -4.8048 | opp_overlap 3976100 3976094 3976101 AAGAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4385 3976119 - 3976101 - R 100 -16 -3.05433 | opp_overlap 3976101, overlap 3976100 3976094 AAGAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_3558 3976658 - 3976200 - | transposase for the IS1541 insertion element TERM 4386 3976789 - 3976771 - R 100 -16 -3.07307 | opp_overlap 3976771 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4387 3976771 - 3976789 + r 100 -16 -4.36914 | opp_overlap 3976771 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4388 3976828 - 3976808 - R 100 -13.3 -5.24129 | TCTGGGCACAAAAAA GCTCAACGC TAT GCGCTGAGC CCGATCATTAGAGCG ilvH 3977351 - 3976857 - | acetolactate synthase 3 regulatory subunit YPA_3560 3979081 - 3977354 - | acetolactate synthase 3 catalytic subunit TERM 4389 3978633 - 3978610 - G 77 -11 -3.36492 | gap 1 TTGGCAAGTCGATAA CCACCGGACCG GGA CGG-CCAGTGG ATGCCAGATAAAAGG TERM 4390 3979150 - 3979164 + r 75 -5.6 -4.64159 | opp_overlap 3979152, overlap 3979152 CGATATTCTGTAGGA AAGGCG CAA CGCCTC TTTATTCTTATTTGT TERM 4391 3979162 - 3979152 - R 73 -8.2 -3.73402 | opp_overlap 3979150 3979152 ATATTCTGTAGGAAA GGCG CAA CGCC TCTTTATTCTTATTT TERM 4392 3979152 - 3979162 + r 75 -8.2 -3.90009 | opp_overlap 3979152, overlap 3979150 ATATTCTGTAGGAAA GGCG CAA CGCC TCTTTATTCTTATTT TERM 4393 3979522 - 3979483 - R 100 -13.6 -3.5362 | overlap 3979481 3979485 GAACGGTCAGAAAGA CAGCAGCGACCAGTGTGA GACT TAACACCGGTCACTGCGG GGAGGAATGGTGAAC TERM 4394 3979520 - 3979485 - R 100 -14.8 -3.33798 | overlap 3979483 3979481 ACGGTCAGAAAGACA GCAGCGACCAGTGTGA GACT TAACACCGGTCACTGC GGGGAGGAATGGTGA YPA_3561 3981346 - 3979541 - | putative AMP-binding enzyme-family protein leuO 3982912 - 3981956 - | leucine transcriptional activator TERM 4395 3982230 - 3982246 + g 80 -2.2 -5.39721 | opp_overlap 3982230 GTTGAGTCGTAATAA GGCTCA CTGAA TGACCC TTTTTTATCTAATGA TERM 4396 3983300 - 3983282 - H 72 -6.2 -4.35885 | opp_overlap 3983282 3983281 3983297, overlap 3983297 AGCCACCACAACAAA TTTATATT AGT AATATAAA AATTTTAATTATAAT TERM 4397 3984083 - 3984064 - H 86 -10.6 -3.83155 | opp_overlap 3984065, overlap 3984065 CATCAAGATTAACAA GCCCGCGC AAAT GCGCGGGT TTTTTTTGTGCCCAG TERM 4398 3984082 - 3984065 - H 95 -14.1 -2.8917 | opp_overlap 3984065, overlap 3984064 ATCAAGATTAACAAG CCCGCGC AAAT GCGCGGG TTTTTTTTGTGCCCA TERM 4399 3984065 - 3984082 + H 100 -14.1 -5.93809 | opp_overlap 3984065 3984064 ATCAAGATTAACAAG CCCGCGC AAAT GCGCGGG TTTTTTTTGTGCCCA TERM 4400 3984103 - 3984121 + H 100 -16 -3.07307 | opp_overlap 3984103 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4401 3984121 - 3984103 - H 100 -16 -4.36914 | opp_overlap 3984103 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3563 3984234 - 3984692 + | transposase for the IS1541 insertion element TERM 4402 3984766 - 3984798 + F 100 -11.3 -4.4009 | opp_overlap 3984773, overlap 3984770 3984772 3984773 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTATCCGCTGAGC TERM 4403 3984770 - 3984794 + F 100 -9.9 -4.77775 | opp_overlap 3984773, overlap 3984766 3984772 3984773 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTATCCGCT TERM 4404 3984772 - 3984792 + F 100 -12.5 -3.99938 | opp_overlap 3984773, overlap 3984770 3984766 3984773 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTATCCG TERM 4405 3984773 - 3984791 + F 100 -16 -2.98878 | opp_overlap 3984773, overlap 3984772 3984770 3984766 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTATCC TERM 4406 3984791 - 3984773 - f 100 -16 -4.8048 | opp_overlap 3984773 3984772 3984770 3984766 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTATCC YPA_3564 3984839 - 3986401 + | 2-isopropylmalate synthase YPA_3565 3986404 - 3987495 + | 3-isopropylmalate dehydrogenase TERM 4407 3987555 - 3987539 - g 70 -2.9 -4.80882 | opp_overlap 3987540, overlap 3987540 ACGTTATACCAAAAA TTGTACG ATG CGCACAT TGTGCATGAAGCCCC TERM 4408 3987996 - 3987984 - g 70 -9.1 -3.64703 | TGTTGGCGACCCAAA CCCTG AAG CAGGG GCGAGCCAAAACCAT YPA_3566 3987497 - 3988927 + | isopropylmalate isomerase large subunit TERM 4409 3989008 - 3988995 - g 70 -8.1 -3.78022 | GTTAGATGCAGCAAA CGTCG ATAC CGACG CGATTATCCCTAAGC leuD 3988942 - 3989544 + | isopropylmalate isomerase small subunit TERM 4410 3989685 - 3989655 - T 86 -12 -3.20896 | gap 1, overlap 3989653 3989651 TAAGTAACTAATAGA TTGTTGGTGCCGG GTCGTA CCGGC-CCAACAA GTAACACGTTTAACT YPA_3568 3990054 - 3989785 - | major facilitator superfamily transporter sugar efflux pump TERM 4411 3990102 - 3990120 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3569 3990124 - 3991146 + | transposase for insertion sequence IS100 TERM 4412 3991227 - 3991213 - g 77 -11.4 -3.3506 | overlap 3991204 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3570 3991146 - 3991925 + | transposase/IS protein YPA_3571 3992925 - 3991969 - | hypothetical protein TERM 4413 3992398 - 3992388 - G 80 -3.2 -5.31855 | CACTAATAACAAAAA TACC GGC GGCA ATGCTAAACATCAGC TERM 4414 3992960 - 3992949 - H 71 -4.4 -4.84359 | CCAGCGCCAGAAAAA GCTA TTAT TAGC ATAATCATAATGGTG TERM 4415 3993410 - 3993389 - H 100 -8.7 -5.93252 | GGGAAAAAGAAAAAA GCCAGCAGA AAAA CCTACTGGC TGGTGAAAAACACCA YPA_3572 3993589 - 3995250 + | transcriptional regulator SgrR TERM 4416 3996427 - 3996417 - gf 74 -4.6 -4.75174 | GATGGAAGGTAAAAA CAGC CAG GCCG ATGTGATTTTAGGGT TERM 4417 3996498 - 3996476 - gf 74 -7 -4.30987 | opp_overlap 3996476, overlap 3996472 AGGCGGCAGAACAAA CCGGCTTG TTTACCC CAAGCCAG GTTGATACCCGTAAC tbpA 3996190 - 3997182 + | thiamine transporter substrate binding subunit TERM 4418 3997188 - 3997205 + GF 77 -10.5 -3.14931 | CAGCCGTTAATCGCG CCCTGGC TATG GCCGGGG TTGCTGGCCGCTGGG TERM 4419 3998537 - 3998570 + GF 84 -10.9 -3.58905 | opp_overlap 3998536 3998535, overlap 3998539 3998543 ACGCGCCCTGAAACG CCCACTGGCTCAGGC GCTG GCCTTTGCCAGTGTG TTATCTATCGGCGAT TERM 4420 3998539 - 3998568 + GF 89 -12.1 -3.37198 | opp_overlap 3998536 3998535, overlap 3998537 3998543 GCGCCCTGAAACGCC CACTGGCTCAGGC GCTG GCCTTTGCCAGTG TGTTATCTATCGGCG thiP 3997146 - 3998765 + | thiamine transporter membrane protein thiQ 3998752 - 3999462 + | thiamine transporter ATP-binding subunit YPA_3576 4000298 - 3999531 - | DedA family membrane protein TERM 4421 3999862 - 3999839 - G 76 -8.1 -4.2074 | CGGGGAAGAGATAAA TCGGCGGCC ATGTCA GGCCACCAA TCACACTGGGTAAGG TERM 4422 4001312 - 4001323 + G 71 -7.2 -4.09805 | GCATTTCTTTGCTTC CGCC GCCG GGCG TTTAATTATTGATGG TERM 4423 4002008 - 4002034 + G 78 -3.7 -5.1101 | gap 2, overlap 4002009 TATGAATGCCTTTTA TGGC-GT-GCTGG GTT CCAGCGGCTGCCG TTTTTTCGATCCTCG YPA_3577 4000494 - 4002863 + | DNA polymerase II TERM 4424 4003655 - 4003693 + G 90 -11.7 -4.08216 | opp_overlap 4003666 4003667 ACAGGATCGCTTATT CGCCGGTCAAATCGATC GCATG GATCGCTTTGCCCTGCG TTTTCGCGCCCGTAA YPA_3578 4003308 - 4006214 + | ATP-dependent helicase HepA TERM 4425 4006335 - 4006361 + T 70 -7.2 -3.82218 | gap 1, opp_overlap 4006323, overlap 4006334 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCTCTGCCT TERM 4426 4006424 - 4006446 + T 100 -13.5 -5.71712 | TTGTCAGCAGTCTGA TATCCGGGG CATTC CCCCGGATA TTTTTTTGTCTGACG YPA_3579 4006823 - 4006470 - | hypothetical protein YPA_3580 4010339 - 4006845 - | hypothetical protein YPA_3581 4011958 - 4010348 - | OmpA family membrane protein YPA_3582 4013310 - 4011955 - | hypothetical protein TERM 4427 4012521 - 4012533 + g 70 -4.8 -4.65895 | opp_overlap 4012495 ATTGGAACAACTGCT CAGG GTGTA CCTG TTTTTGCATCAACAC YPA_3583 4013921 - 4013430 - | putative lipoprotein TERM 4428 4013700 - 4013717 + g 79 -9.1 -4.18488 | opp_overlap 4013699 CCCCTGATACAAACC GGGGGGT GACC ACCCCTC TTTATTCAGCTCAAT YPA_3584 4014279 - 4013914 - | hypothetical protein YPA_3585 4014902 - 4014285 - | hypothetical protein YPA_3586 4015998 - 4014895 - | hypothetical protein TERM 4429 4015936 - 4015896 - G 82 -6.9 -4.88795 | opp_overlap 4015905 ATTGAATAAAATAAA CCTCAGACAGCGTTAACTG CTG CAACTGACGCTGTGTAAAG TGCCGGCCAATAATC YPA_3587 4017613 - 4016024 - | hypothetical protein YPA_3588 4018243 - 4017671 - | hypothetical protein YPA_3589 4020595 - 4018256 - | hypothetical protein YPA_3590 4023287 - 4020699 - | putative Clp ATPase YPA_3591 4024288 - 4023305 - | hypothetical protein YPA_3592 4026125 - 4024281 - | hypothetical protein YPA_3593 4026601 - 4026158 - | hypothetical protein YPA_3594 4027193 - 4026675 - | hypothetical protein TERM 4430 4027243 - 4027259 + r 76 -10.9 -2.72991 | GTTAAATCAGTATTC GGCAACT CAA AGTTGCC TCATTAAAAATGTAC TERM 4431 4027333 - 4027358 + r 73 -5.5 -4.74598 | gap 1, opp_overlap 4027336 4027340 ATATTCCCCCTCTAA TAAGCG-AGTGA TAT TCACAGCGCTTA TTTCTTTTCGCTTTC YPA_3595 4028261 - 4027356 - | hypothetical protein TERM 4432 4028091 - 4028077 - G 70 -4.3 -4.67038 | opp_overlap 4028077, overlap 4028072 TCTTCAAAAGCAAAA TCATC AATAG GATGA TTTTTGGCACCATAC TERM 4433 4028296 - 4028314 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3596 4028318 - 4029340 + | transposase for insertion sequence IS100 TERM 4434 4029421 - 4029407 - g 77 -11.4 -3.3506 | overlap 4029398 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3597 4029340 - 4030119 + | transposase/IS protein YPA_3598 4030419 - 4030129 - | hypothetical protein TERM 4435 4030763 - 4030744 - R 79 -7.8 -4.31859 | overlap 4030741 4030738 CGAACAAAATAATAA GGAGAGGA TGAT CCCTCCCC AATATCCGTACCAGG YPA_3599 4031539 - 4030784 - | putative transposase YPA_3600 4031883 - 4031617 - | helix-turn-helix, Fis-type TERM 4436 4032180 - 4032200 + H 71 -8.9 -3.28712 | opp_overlap 4032180 CGTACACAGCAAAAA CCCCACGCT TTT GGCATGGGG TTATCAGCACAACGC TERM 4437 4032200 - 4032180 - H 100 -10.4 -4.84527 | opp_overlap 4032180 CGTACACAGCAAAAA CCCCACGC TTTTG GCATGGGG TTATCAGCACAACGC TERM 4438 4032246 - 4032266 + H 71 -8.9 -3.35679 | opp_overlap 4032246 CGCACACAGCAAAAA CCCCACGCT TTG GGCATGGGG TTATCAGTACAACGC TERM 4439 4032266 - 4032246 - H 100 -10.4 -4.84527 | opp_overlap 4032246 CGCACACAGCAAAAA CCCCACGC TTTGG GCATGGGG TTATCAGTACAACGC TERM 4440 4032305 - 4032339 + H 95 -9.2 -4.50627 | opp_overlap 4032312 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 4441 4032332 - 4032312 - H 100 -10.4 -4.8048 | opp_overlap 4032305 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 4442 4032570 - 4032560 - H 74 -6.8 -4.27316 | opp_overlap 4032560 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4443 4033682 - 4033693 + H 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4444 4033729 - 4033755 + H 70 -9.4 -2.75844 | opp_overlap 4033705 4033707, overlap 4033728 4033731 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4445 4034189 - 4034207 + H 82 -10.3 -3.57798 | overlap 4034182 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG purH 4038210 - 4039799 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 4446 4040869 - 4040901 + G 76 -12 -2.87003 | overlap 4040865 4040865 GGGGGTCGTTTTAGC CGCTGGCGGTTATC CAGCA GATTACCGCCAGGG TGATGTTATTCATGG YPA_3602 4039859 - 4041145 + | phosphoribosylamine--glycine ligase YPA_3603 4041946 - 4041293 - | hypothetical protein TERM 4447 4041968 - 4041955 - R 78 -5.2 -4.99043 | GCTGCATAAACAAAA GGGG TTTTAT CCCC CCCCTGCTTATTATT YPA_3604 4042271 - 4041996 - | transcriptional regulator HU subunit alpha YPA_3605 4043050 - 4042460 - | hypothetical protein YPA_3606 4043800 - 4043096 - | endonuclease V TERM 4448 4043608 - 4043592 - G 77 -10.9 -3.56959 | opp_overlap 4043591, overlap 4043583 ATATAAGGCAGAGAA GTTGCCA CTC TGGCAAC CTGGTATTCCACCAG hemE 4044933 - 4043866 - | uroporphyrinogen decarboxylase TERM 4449 4044061 - 4044078 + g 78 -9.9 -3.85698 | AACCGAAGGATCCAT GTTGCCT TGCA AGGCAAC TTTATCACCAACACG TERM 4450 4044755 - 4044737 - G 76 -11 -3.33492 | GCATCCAGCGGATAA CGACGCAG TGG CTGCATCG TGACCTCACAGGCTA YPA_3608 4045795 - 4045052 - | hypothetical protein nudC 4046712 - 4045930 - | NADH pyrophosphatase YPA_3610 4046809 - 4047318 + | anti-RNA polymerase sigma 70 factor TERM 4451 4047393 - 4047370 - f 86 -8.9 -4.37886 | opp_overlap 4047378 4047383, overlap 4047383 GTAGCGTGCACAAAA TGAGCAAGC AGAATA GCCTGCTCA TAAGTAGGCTATTGT TERM 4452 4047383 - 4047404 + F 78 -9.5 -3.72152 | opp_overlap 4047370 4047383, overlap 4047378 AATGAGCAAGCAGAA TAGCCTGCT CATA AGTAGGCTA TTGTAGTTTTAATTC YPA_3611 4047694 - 4049739 + | thiamine biosynthesis protein ThiC TERM 4453 4050171 - 4050193 + G 71 -11.2 -2.71731 | opp_overlap 4050166 4050169 4050168 AGACCAAACAGATGC CGTCATCCCC ACA GGGGTTGGCG TCGTTAAGCCGTCAG YPA_3612 4049726 - 4050400 + | thiamine-phosphate pyrophosphorylase TERM 4454 4050886 - 4050873 - g 74 -4.5 -4.85599 | overlap 4050881 GTCACGGCACAAAAA CCACT AATC AGCGG CAGTGCTGTGGGGTT YPA_3613 4050390 - 4051187 + | thiamine biosynthesis protein ThiF YPA_3614 4051184 - 4051399 + | sulfur carrier protein ThiS thiG 4051401 - 4052216 + | thiazole synthase TERM 4455 4052930 - 4052940 + G 70 -3.2 -4.86731 | overlap 4052924 ACTGTTATATGCTGG CGGA GCA TCTG TTTTATTTGCAACAA TERM 4456 4053296 - 4053280 - g 70 -4.3 -4.65747 | overlap 4053281 CAAGCGTTAACAAAA GCAGGCT TAC AGCCCGT GTGGAAAGATTGGGA thiH 4052209 - 4053339 + | thiamine biosynthesis protein ThiH TERM 4457 4053377 - 4053364 - f 70 -3.7 -4.74706 | opp_overlap 4053365, overlap 4053365 CGTAATATTGAAAAA CCGCC CGAA GGCGT AATATCAGTGAGTTA TERM 4458 4053566 - 4053583 + F 76 -9.8 -3.32022 | opp_overlap 4053566 AATAAACAAAAAAAA CGGCCC GAGAAG GGGCCG TTCGTCTCTCAAAAA TERM 4459 4053583 - 4053566 - f 100 -9.8 -6.32017 | opp_overlap 4053566 AATAAACAAAAAAAA CGGCCC GAGAAG GGGCCG TTCGTCTCTCAAAAA TERM 4460 4053594 - 4053625 + F 86 -11.7 -3.28712 | opp_overlap 4053599 4053613 4053615, overlap 4053599 GGCCGTTCGTCTCTC AAAAACCCGCATC CCGAAA GATGCGGGTTTTG TTGTGCCCAGAAAAC TERM 4461 4053620 - 4053599 - f 100 -12.3 -4.56597 | opp_overlap 4053594 4053599, overlap 4053613 4053615 TTCGTCTCTCAAAAA CCCGCATCC CGAA AGATGCGGG TTTTGTTGTGCCCAG TERM 4462 4053599 - 4053620 + F 100 -11.6 -4.77165 | opp_overlap 4053599 4053613 4053615, overlap 4053594 TTCGTCTCTCAAAAA CCCGCATC CCGAAA GATGCGGG TTTTGTTGTGCCCAG TERM 4463 4053640 - 4053658 + F 100 -16 -3.07307 | opp_overlap 4053615 4053613 4053640 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4464 4053658 - 4053640 - f 100 -16 -4.36914 | opp_overlap 4053640, overlap 4053615 4053613 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3617 4053771 - 4054229 + | transposase for the IS1541 insertion element TERM 4465 4054307 - 4054331 + T 100 -9.9 -4.51743 | opp_overlap 4054310, overlap 4054309 4054310 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGGTAGTAG TERM 4466 4054309 - 4054329 + T 100 -12.5 -3.86206 | opp_overlap 4054310, overlap 4054307 4054310 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGGTAGT TERM 4467 4054310 - 4054328 + T 100 -16 -2.90639 | opp_overlap 4054310, overlap 4054309 4054307 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGGTAG TERM 4468 4054328 - 4054310 - T 100 -16 -4.8048 | opp_overlap 4054310 4054309 4054307 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGGTAG YPA_3618 4058612 - 4054356 - | DNA-directed RNA polymerase subunit beta' TERM 4469 4056764 - 4056779 + g 70 -2.6 -5.00616 | gap 1 GGTAACACGTGTTCA GC-ATCT TAG AGATAGC TTTTTTACCCAGCGG rpoB 4062733 - 4058705 - | DNA-directed RNA polymerase subunit beta TERM 4470 4058803 - 4058813 + g 79 -5.4 -4.91459 | overlap 4058810 CCATACGGTGATCGC CATC CAC GATG TTTTTGTACATCTTG TERM 4471 4059691 - 4059707 + g 91 -10.9 -4.56314 | CGTCGTACTGCTCTG CCAACTG TTC CAGTTGG TTTTGCTTGTCTTCG TERM 4472 4062079 - 4062065 - G 72 -8.6 -3.9122 | opp_overlap 4062053 CACTTTCTCAAAGAA CAGATC CAA GATCTG TGCAGTGGTGAAATT TERM 4473 4063036 - 4063011 - R 100 -14.1 -4.64766 | CCTACAGCGCAAAAA GGCTGATGACT AAAA AGTCACCAGCC ATCAGCCTATAAAGT rplL 4063444 - 4063076 - | 50S ribosomal protein L7/L12 rplJ 4064008 - 4063511 - | 50S ribosomal protein L10 TERM 4474 4064048 - 4064030 - R 95 -13.2 -3.14132 | TTGCTCCTGGATTAA CCGGAGAA TAA TTCTCCGG AACTCACGTCACCCA TERM 4475 4064086 - 4064065 - R 71 -9.5 -3.06915 | ACTCACGTCACCCAA TTCACGACA AAAT TGCCGTGAA CGAGCGTTGAAACAC TERM 4476 4064130 - 4064165 + r 73 -3.5 -4.94962 | opp_overlap 4064160, overlap 4064160 CAGCAAAGACTATTC TTTATCATTCTTTAT AAACAA ATAAAGAAAGAAAAA TTTTCTTTAGGTTCT TERM 4477 4064170 - 4064160 - R 71 -4 -4.88895 | opp_overlap 4064130 4064160 AAACAAATAAAGAAA GAAA AAT TTTC TTTAGGTTCTGTCAC TERM 4478 4064350 - 4064309 - R 93 -12.6 -3.16553 | gap 1, overlap 4064307 4064311 4064314 4064336 ACAACGATCAACAGA TAGCATGGGCGTAAGATTT TAGAC AAACCTTACGCCCACG-TA AAGCGATAAAAGCAA TERM 4479 4064349 - 4064311 - R 100 -13.3 -3.13565 | overlap 4064309 4064307 4064314 4064336 AACGATCAACAGATA GCATGGGCGTAAGATTT TAGAC AAACCTTACGCCCACGT AAAGCGATAAAAGCA TERM 4480 4064346 - 4064314 - R 100 -15.8 -2.76689 | overlap 4064311 4064309 4064307 4064336 GATCAACAGATAGCA TGGGCGTAAGATTT TAGAC AAACCTTACGCCCA CGTAAAGCGATAAAA rplA 4065077 - 4064373 - | 50S ribosomal protein L1 rplK 4065509 - 4065081 - | 50S ribosomal protein L11 TERM 4481 4065659 - 4065631 - R 100 -16.2 -5.2853 | CATCTAAAAACAAAA GGCGCGAAATTA TATTT TAATTTCGCGCC TAAGACAAGACTCAA nusG 4066245 - 4065700 - | transcription antitermination protein NusG TERM 4482 4066314 - 4066271 - R 74 -6.8 -4.25056 | gap 1, overlap 4066280 CAGGCCAGTAATAAA TGATACCAAGCGGACTAGGAT ACC ATCC-AGTCCCCATAGAATCA GTGACATTACAGCAG secE 4066630 - 4066247 - | preprotein translocase subunit SecE TERM 4483 4066689 - 4066665 - R 79 -7.9 -4.28115 | overlap 4066658 4066666 ATTCAGAACAAACAA CTTTGCTTCGC ATC GCAAAGCAAAC CAAGCCGAAGGATGC TERM 4484 4066688 - 4066666 - R 84 -11.4 -3.15784 | overlap 4066658 4066665 TTCAGAACAAACAAC TTTGCTTCGC ATC GCAAAGCAAA CCAAGCCGAAGGATG TERM 4485 4066856 - 4066839 - R 100 -11.3 -4.91712 | opp_overlap 4066839 TGCAACGTATAAAAA GGGCATC AAAT GATGCCC TTTTATCGCATGTCG TERM 4486 4066839 - 4066856 + r 100 -11.3 -4.41548 | opp_overlap 4066839 TGCAACGTATAAAAA GGGCATC AAAT GATGCCC TTTTATCGCATGTCG YPA_3626 4068065 - 4066881 - | elongation factor Tu YPA_3627 4069106 - 4069008 - | hypothetical protein YPA_3628 4069901 - 4069122 - | transposase/IS protein TERM 4487 4069820 - 4069834 + g 77 -11.4 -3.3506 | overlap 4069833 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3629 4070923 - 4069901 - | transposase for insertion sequence IS100 TERM 4488 4070945 - 4070927 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_3630 4071053 - 4070937 - | hypothetical protein YPA_3631 4071801 - 4070950 - | putative oxidoreductase YPA_3632 4072059 - 4072937 + | AraC family transcriptional regulator YPA_3633 4073602 - 4073099 - | putative carbohydrate transport protein YPA_3634 4074537 - 4073608 - | carbohydrate kinase TERM 4489 4074366 - 4074346 - G 82 -11.9 -3.58536 | AAATTCATGGCCAAA GGTGTCATC ACC GACGACACC CGCATAGGCGACCTC YPA_3635 4075395 - 4074694 - | putative deoxyribose-phosphate aldolase YPA_3636 4075866 - 4076447 + | NAD(P)H-dependent FMN reductase YPA_3637 4076462 - 4077598 + | alkanesulfonate transporter substrate-binding subunit YPA_3638 4077617 - 4078765 + | alkanesulfonate monooxygenase YPA_3639 4078774 - 4079571 + | putative aliphatic sulfonates transport permease protein TERM 4490 4080001 - 4080025 + G 95 -11.3 -4.57882 | AACGTGTTGCACTGG CGCGGGCGCTG ATC CATCGCCCCCG TTTATTGTTGTTGGA ssuB 4079568 - 4080383 + | aliphatic sulfonates transport ATP-binding subunit TERM 4491 4080836 - 4080862 + T 72 -10.1 -2.84602 | gap 1, opp_overlap 4080825, overlap 4080831 4080837 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCCCTGCC TERM 4492 4080837 - 4080863 + T 84 -10.1 -3.74872 | gap 1, opp_overlap 4080825, overlap 4080831 4080836 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCCCTGCCT TERM 4493 4080946 - 4080963 + T 70 -2.7 -5.00884 | CGCCTTTTTATTCTT GGTGTAA CGCT TTGCATC TTTTTTAAAGCGGCT YPA_3641 4081205 - 4081002 - | putative DNA-damage-inducible protein TERM 4494 4081317 - 4081276 - H 88 -11.1 -3.75015 | gap 1, opp_overlap 4081267 4081279 4081280, overlap 4081279 ATAACCTCCATTAAA TTAC-CCTTATTGTAGCTAC GAT GTAGCTACAATAAGGTGTTT GAGCGATGTTTATTC TERM 4495 4081313 - 4081279 - H 100 -17.4 -2.96873 | opp_overlap 4081267 4081279 4081280, overlap 4081276 ACCTCCATTAAATTA CCCTTATTGTAGCTAC GAT GTAGCTACAATAAGGT GTTTGAGCGATGTTT TERM 4496 4081279 - 4081314 + H 100 -17.2 -3.58329 | gap 1, opp_overlap 4081279 4081276, overlap 4081267 4081280 ACCTCCATTAAATTA C-CCTTATTGTAGCTAC GAT GTAGCTACAATAAGGTG TTTGAGCGATGTTTA TERM 4497 4081280 - 4081312 + H 100 -20.9 -3.36341 | opp_overlap 4081279 4081276, overlap 4081279 4081267 CCTCCATTAAATTAC CCTTATTGTAGCTAC GAT GTAGCTACAATAAGG TGTTTGAGCGATGTT TERM 4498 4081831 - 4081844 + G 72 -8.1 -3.86346 | opp_overlap 4081821, overlap 4081830 GCAAAGCCGGTTTCC CACCG ACGG CGGTG TTTGTCGCGACCTGC TERM 4499 4082560 - 4082583 + G 70 -4.6 -4.64657 | gap 1, opp_overlap 4082542, overlap 4082563 GCGGTGGTAAAGCGC TGACCACTGAC TCC GTCAGTAG-CA TTTTTGCGGGTTTGG YPA_3642 4081659 - 4083014 + | putative xanthine/uracil permease TERM 4500 4083166 - 4083202 + F 76 -9.3 -3.45514 | overlap 4083165 4083157 TAATAACAATTGGTT GCAGGCATCGGGGGGGA TTA TCCTCCCCGATGTGAAC TTAATGTTATATATC YPA_3643 4083363 - 4085012 + | putative putative Na(+)/H(+) exchanger protein TERM 4501 4085024 - 4085042 + T 100 -12.4 -3.61268 | TTAATATCTTACGGA CGGGGCTA ATT TGGCCCCG TTTACCGATTACATG YPA_3644 4086417 - 4085230 - | hypothetical protein TERM 4502 4085795 - 4085827 + g 86 -8.4 -4.74801 | opp_overlap 4085794 4085795 ATGGGTTCACCAAAG GCGGTGACTAACGC ATTTC GCGTTAATGGCCGC TTTTTGCTCAGATTA YPA_3645 4087558 - 4086569 - | lipid A biosynthesis palmitoleoyl acyltransferase YPA_3646 4088283 - 4089272 + | putative periplasmic binding protein YPA_3647 4089476 - 4090972 + | ABC transporter ATP binding protein TERM 4503 4090989 - 4091006 + G 71 -5.5 -4.55118 | opp_overlap 4090981 CTAAAACTGCGCCAA CTCACGG GGCA CCATGAG TTTTATCTCGGGTTG YPA_3648 4090965 - 4091954 + | putative branched-chain amino acid transport system, permease component YPA_3649 4091956 - 4092909 + | putative ABC transporter, permease protein YPA_3650 4092928 - 4094565 + | putative carbohydrate kinase YPA_3651 4094562 - 4095167 + | putative phosphosugar isomerase/binding protein TERM 4504 4095201 - 4095226 + T 100 -7.5 -5.72616 | gap 1, opp_overlap 4095201 CGCGTGAAAGAGAAA CACCGCAACGGT ATG GCCGC-GCGGTG TTTTTTTATGTCAGT TERM 4505 4095226 - 4095201 - T 86 -9 -4.32857 | gap 1, opp_overlap 4095201 CGCGTGAAAGAGAAA CACCGCAACGG TATGG CCGC-GCGGTG TTTTTTTATGTCAGT TERM 4506 4095298 - 4095319 + T 70 -3.6 -4.85599 | TTTTTTCAGCACTCT GAGCCTGC ACTAAG GCCGGTTC TTTTTATCAGGTCAG YPA_3652 4096211 - 4095357 - | putative glutathione S-transferase YghU TERM 4507 4095751 - 4095730 - G 74 -7.9 -4.20883 | opp_overlap 4095745, overlap 4095745 4095746 TAAAAATGCCCAAAA CCGCCCCCT AAAT AAGGGGCTG CACCTTGTAGCCAGA TERM 4508 4095835 - 4095817 - G 71 -6.7 -4.1552 | opp_overlap 4095805 GATTTCGGTAAGAAA TGACCGA ATTTA TCGGCCA AATAAAGCAGAATGG YPA_3653 4096462 - 4097808 + | hypothetical protein TERM 4509 4097832 - 4097877 + T 88 -6.8 -5.12707 | opp_overlap 4097831 4097832 ATCTTTCCTGACAAG CCCGGGTATGAACTGTCC AACTTTATGG GGCCAGTCCATGCGCGGG TTTTTTACGCTTTAA YPA_3654 4099090 - 4097915 - | hypothetical protein TERM 4510 4097972 - 4097987 + g 81 -6.2 -5.04082 | overlap 4097978 CTCAAGAATGTTAAG TGTCTT GGAT AAGACA TTTTCTTGTTCTTTG TERM 4511 4098989 - 4098973 - G 73 -2.9 -4.93296 | overlap 4098974 4098977 CCATGACGATAAAAA CCAGCAC AGG GTCCTGA GTCTCACTTTTAAGA TERM 4512 4099325 - 4099346 + H 71 -4.4 -4.82901 | opp_overlap 4099328, overlap 4099328 GTCATAGGCACAAAA AAACCTGC ACGGAG GCAGGTTC TTTTTGTGCCCAGAA TERM 4513 4099343 - 4099328 - H 100 -6.1 -5.65177 | opp_overlap 4099325 4099328 ATAGGCACAAAAAAA CCTGC ACGGAG GCAGG TTCTTTTTGTGCCCA TERM 4514 4099328 - 4099343 + H 74 -6.1 -4.52873 | opp_overlap 4099328, overlap 4099325 ATAGGCACAAAAAAA CCTGC ACGGAG GCAGG TTCTTTTTGTGCCCA TERM 4515 4099364 - 4099382 + H 100 -16 -3.07307 | opp_overlap 4099364 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4516 4099382 - 4099364 - H 100 -16 -4.36914 | opp_overlap 4099364 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3655 4099495 - 4099953 + | transposase for the IS1541 insertion element TERM 4517 4100031 - 4100055 + T 100 -9.9 -4.47456 | opp_overlap 4100034, overlap 4100033 4100034 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTATTCGGTAT TERM 4518 4100033 - 4100053 + T 100 -12.5 -3.83566 | opp_overlap 4100034, overlap 4100031 4100034 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTATTCGGT TERM 4519 4100052 - 4100034 - T 100 -16 -4.8048 | opp_overlap 4100033 4100031 4100034 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTATTCGG TERM 4520 4100034 - 4100052 + T 100 -16 -2.89055 | opp_overlap 4100034, overlap 4100033 4100031 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTATTCGG YPA_3656 4100348 - 4100136 - | major cold shock protein Cspa2 YPA_3657 4100916 - 4100608 - | major cold shock protein Cspa1 YPA_3658 4101065 - 4101262 + | hypothetical protein TERM 4521 4101318 - 4101282 - T 78 -10.3 -3.33162 | gap 1, overlap 4101283 TACGGCATTTGATAA CCAGTCCGTAGGCATG GGCTAT CA-GCCTACAGACTGA AAACTGGGGTTAACG TERM 4522 4101317 - 4101283 - T 80 -11.6 -2.59683 | gap 1, overlap 4101282 ACGGCATTTGATAAC CAGTCCGTAGGCATG GGCTAT CA-GCCTACAGACTG AAAACTGGGGTTAAC YPA_3659 4101820 - 4101353 - | outer membrane lipoprotein YPA_3660 4102296 - 4103108 + | hypothetical protein YPA_3661 4103173 - 4104063 + | putative 2-hydroxy-3-oxopropionate reductase YPA_3662 4104241 - 4104636 + | putative gamma carboxymuconolactone decarboxylase YPA_3663 4104790 - 4106154 + | putative metabolite transport protein YPA_3664 4106244 - 4106906 + | GntR family transcriptional regulator YPA_3665 4106972 - 4107448 + | hypothetical protein TERM 4523 4108172 - 4108147 - T 89 -6.8 -5.32882 | opp_overlap 4108147 CATTATTATAAAAAA GGCGCTAACC AATTAA GGATAACGCC TTTTTAAACAACACC fis 4108498 - 4108202 - | DNA-binding protein Fis YPA_3667 4109488 - 4108523 - | tRNA-dihydrouridine synthase B TERM 4524 4110036 - 4110061 + r 100 -19.1 -2.52464 | opp_overlap 4110025, overlap 4110025 AAAGGTGAGTTGTGA CGCACACGGAC TCAA GTCCGTGTGCG TCAGTTAAGGCAAAA prmA 4110991 - 4110077 - | ribosomal protein L11 methyltransferase TERM 4525 4110110 - 4110139 + g 71 -7.2 -3.99324 | AATGCGGCACCATTC TTCTTTCTCGGC GACTGG GTCGAGAATGAA TTTATCCTCATAGGC TERM 4526 4110278 - 4110310 + g 77 -9.2 -4.09685 | gap 1, opp_overlap 4110271 CAGAATATTGGCCAC GACCACGTCAGCAGA TAGT TCTGCGGGC-TGGTC TTTTGCCAGATACAG TERM 4527 4110975 - 4111006 + g 88 -15.9 -2.77148 | overlap 4110973 4110970 4110968 GCAATTCTCTCAAGC GCCGGTATCGGGG CCATAA CCACGATACCGGC TGATGTGTTGATAGA panF 4112488 - 4111034 - | sodium/panthothenate symporter TERM 4528 4112369 - 4112355 - G 73 -5.6 -4.66938 | ATCGCCAATACAAAA CCGCCC ATC GAACGG TTGCCGATAAAATAT YPA_3670 4112720 - 4112478 - | hypothetical protein TERM 4529 4113858 - 4113837 - R 75 -2.3 -5.40004 | overlap 4113838 GAGCAAATTAAAAAA TTTCAGCTT AAAT AAACTGAAG GTAAGATATACGGCT TERM 4530 4113953 - 4113921 - R 86 -12.1 -3.20435 | opp_overlap 4113922, overlap 4113922 TTAATTAGCCATCAA GGCCTGAATTCCGCA CTC TACAGAATTCAGGCT TTTTAACTTCAGTTT TERM 4531 4113952 - 4113922 - R 100 -15.6 -2.5194 | opp_overlap 4113922, overlap 4113921 TAATTAGCCATCAAG GCCTGAATTCCGCA CTC TACAGAATTCAGGC TTTTTAACTTCAGTT TERM 4532 4113922 - 4113952 + r 100 -11.2 -4.75776 | opp_overlap 4113922 4113921 TAATTAGCCATCAAG GCCTGAATTCCGCA CTC TACAGAATTCAGGC TTTTTAACTTCAGTT TERM 4533 4113982 - 4114023 + r 79 -10.9 -3.17075 | opp_overlap 4113982 4113983 TTATGCCATAAAAAA CTGCCCCCCAATATCAGGT TATT ATCCAATATTGGGGGGCAA TTCAATTAACCGGCC TERM 4534 4114023 - 4113982 - R 100 -15.3 -5.26316 | opp_overlap 4113982, overlap 4113983 TTATGCCATAAAAAA CTGCCCCCCAATATCAGGT TATT ATCCAATATTGGGGGGCAA TTCAATTAACCGGCC TERM 4535 4114022 - 4113983 - R 100 -16.6 -3.75067 | opp_overlap 4113982, overlap 4113982 TATGCCATAAAAAAC TGCCCCCCAATATCAGGT TATT ATCCAATATTGGGGGGCA ATTCAATTAACCGGC YPA_3671 4115427 - 4114078 - | acetyl-CoA carboxylase biotin carboxylase subunit YPA_3672 4115948 - 4115439 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit TERM 4536 4115720 - 4115741 + g 80 -12.3 -3.40403 | GTGCTGGGGCGACGG CGGCAGCCA GCGC TGGCTGCTG TTGTGGTGCAGCAAA YPA_3673 4116513 - 4116061 - | 3-dehydroquinate dehydratase YPA_3674 4117396 - 4116776 - | putative sulfite oxidase subunit YedZ YPA_3675 4118496 - 4117396 - | putative sulfite oxidase subunit YedY TERM 4537 4117782 - 4117747 - G 74 -7.4 -4.14257 | opp_overlap 4117748 GCCAACAACCATAAA GGCCAGCGGGTGCATG GCTT CATCCAACCGCAGCCC TTCGACATAGGGGTA TERM 4538 4117808 - 4117822 + g 74 -4.2 -4.82901 | opp_overlap 4117792 GGGTAGTCCAGTCCC CCGC CAATAAA GCGG TTTTTCTGCCCAGGC TERM 4539 4118615 - 4118647 + r 89 -12 -3.26947 | opp_overlap 4118610 4118609 AATATGAAATTTCTA CCACCGAGGCAAGT GTGAA ACTGACCTCGGTGG TTGCTGTAACGATTA YPA_3676 4119696 - 4118719 - | zinc-binding dehydrogenase TERM 4540 4119848 - 4119835 - H 84 -3.8 -5.4433 | AGACAGAAATAAAAA CCCT GTGTTA AGGG TGAGCCAATATAGCG TERM 4541 4120224 - 4120209 - g 76 -5.4 -4.77165 | TGTGCCAGAAGAAAA TGGAAC AACG GCTCCA AAGTATTGTGACCGC YPA_3677 4120097 - 4122010 + | regulatory protein CsrD TERM 4542 4122012 - 4122002 - f 84 -2.6 -5.63517 | TCCGGAAAGAAAAAA TATT CGT AATA GGGCCATGTTAGCCT TERM 4543 4122579 - 4122594 + G 73 -6 -4.55295 | opp_overlap 4122578 4122580, overlap 4122580 TTCGTCCAATGAAAG ACGGCG TTAT CGCCGA TTTCTTTGTCACGGA TERM 4544 4122580 - 4122593 + G 70 -9.5 -3.32695 | opp_overlap 4122578 4122580, overlap 4122579 TCGTCCAATGAAAGA CGGCG TTAT CGCCG ATTTCTTTGTCACGG TERM 4545 4122593 - 4122580 - g 74 -9.5 -3.54146 | opp_overlap 4122580 4122579, overlap 4122578 TCGTCCAATGAAAGA CGGCG TTAT CGCCG ATTTCTTTGTCACGG YPA_3678 4122347 - 4123390 + | rod shape-determining protein MreB YPA_3679 4123594 - 4124589 + | cell wall structural complex MreBCD transmembrane component MreC YPA_3680 4124586 - 4125074 + | rod shape-determining protein MreD YPA_3681 4125082 - 4125681 + | Maf-like protein YPA_3682 4125671 - 4127140 + | ribonuclease G TERM 4546 4128765 - 4128744 - g 80 -10.1 -4.07687 | opp_overlap 4128748 AGCCGTGGCTGAAAA TACTGGCGG GCAT CCGCCTGTA TGATGCCACCGATGC TERM 4547 4129702 - 4129681 - g 73 -3 -4.96848 | gap 1 GCCGCTAGATAAAAA CAGCGGTCA GGCAT TG-CCACTG CATGTTCAGGTGAAC YPA_3683 4127234 - 4131157 + | hypothetical protein YPA_3684 4131154 - 4132023 + | putative carbon-nitrogen hydrolase YPA_3685 4132035 - 4133480 + | protease TldD TERM 4548 4133507 - 4133560 + T 73 -10.5 -2.50699 | overlap 4133505 AATACAATATGGGTA TTAGGCTTTGTTGGCACTGCATTTG ATAC TAAATTTAGTGCCAACAAAGCATCG GTATATTAGTTAACC TERM 4549 4133639 - 4133667 + T 100 -19.1 -3.67976 | opp_overlap 4133639 4133641 TATTACGGGTATAGA CACCTTCCCTATT CAA AATAGGGAAGGTG TTTAAAATTAATAAA TERM 4550 4133667 - 4133639 - T 100 -19.1 -2.88861 | opp_overlap 4133639, overlap 4133641 TATTACGGGTATAGA CACCTTCCCTATT CAA AATAGGGAAGGTG TTTAAAATTAATAAA TERM 4551 4133665 - 4133641 - T 100 -15.9 -2.99471 | opp_overlap 4133639, overlap 4133639 TTACGGGTATAGACA CCTTCCCTATT CAA AATAGGGAAGG TGTTTAAAATTAATA YPA_3686 4136541 - 4133683 - | putative insecticidal toxin TERM 4552 4136144 - 4136119 - G 73 -3.1 -4.96848 | opp_overlap 4136119 4136120 4136140, overlap 4136120 TGTGGCATAGAAAAA GCGGTCGGTAA CCGT TTTCAGGCCGC CTTTGGCTTGCTCGT YPA_3687 4139514 - 4136566 - | putative insecticidal toxin TERM 4553 4136607 - 4136594 - G 71 -6.7 -4.14627 | opp_overlap 4136592 TTGCTATATAAATAA CGTGA GTAT TCACG TGCTGCTTTTATGTC TERM 4554 4139000 - 4138975 - G 73 -3.1 -4.96848 | opp_overlap 4138975 4138996 TGTGGCATAGAAAAA GCGGTCGGTAA CTGT TTTCAGGCCGC CTTTGGCTTGCTCGT YPA_3688 4139966 - 4139598 - | hypothetical protein YPA_3689 4140355 - 4139954 - | putative phage-related protein YPA_3690 4140670 - 4140368 - | putative phage-related protein TERM 4555 4140790 - 4140764 - R 71 -9.4 -2.90941 | opp_overlap 4140756, overlap 4140753 ATGACAGGGTATAGA GCCTGACCGG GAAGGGG CCGGTTAGGC TCTGCGGCTAATATT YPA_3691 4145294 - 4140804 - | insecticidal toxin complex TERM 4556 4144418 - 4144436 + g 73 -6 -4.5442 | AGAAGGCGTCCTGAC GGAAATTC CAG GATTTTCC TTTTATGATTACCGG TERM 4557 4145310 - 4145329 + r 83 -11.4 -3.06796 | opp_overlap 4145298, overlap 4145298 4145312 AAAGGGCTCTCCTAT CAGGCCCT CTGT GGGGCCTG TTGACTGAGGTAACG YPA_3692 4148944 - 4145351 - | putative toxin subunit TERM 4558 4145399 - 4145410 + g 78 -2.2 -5.34309 | GATGTCGCTCAGGCT TTGC AGCA GCAG TTTTTGTTTGCTAGT TERM 4559 4146208 - 4146223 + g 70 -4.7 -4.59511 | opp_overlap 4146210 GGCCTTGCTCTAACT CAGCT AAATTC AGCTG TTTTTGCGCCATATT TERM 4560 4148886 - 4148916 + g 73 -2.7 -4.93877 | gap 1, overlap 4148894 4148898 TTAGCAAGATAGTAG TTAACCAAT-GCGT CGCG GCGCGATTCGTTAA TTTTATTTAATACAG YPA_3693 4150208 - 4148985 - | putative insecticial toxin TERM 4561 4149072 - 4149082 + gr 83 -5.4 -5.18355 | TATTTTAATTATGGT TCCA GGA TGGA TTTTTAATTTTTCAG YPA_3694 4151475 - 4150177 - | putative insecticial toxin TERM 4562 4151654 - 4151682 + r 78 -9.1 -3.84185 | TTTTTATTGTTATCT TCTGTTTAACTAA ATT TTAGTTAAACAAA TTGTATTTAACTACG YPA_3695 4152577 - 4151711 - | LysR family transcriptional regulator YPA_3696 4153749 - 4152838 - | putative DNA-binding transcriptional regulator TERM 4563 4154114 - 4154128 + G 86 -5 -5.22768 | GATATTTCTTGAGCT GCTAAT TTC ATTGGC TTTGTTTTTTGTTGT YPA_3697 4154052 - 4154255 + | hypothetical protein YPA_3698 4154263 - 4155198 + | p-hydroxybenzoic acid efflux subunit AaeA YPA_3699 4155200 - 4157155 + | p-hydroxybenzoic acid efflux subunit AaeB TERM 4564 4157294 - 4157316 + F 71 -7 -4.22858 | opp_overlap 4157298, overlap 4157298 CGGTTCGAGCCCTCA TAAAGGCGCT CAC GGCGTCTTTG TTATTTCTCTCTTCT TERM 4565 4157298 - 4157312 + F 75 -5.6 -4.65458 | opp_overlap 4157298, overlap 4157294 TCGAGCCCTCATAAA GGCGCT CAC GGCGTC TTTGTTATTTCTCTC TERM 4566 4157658 - 4157639 - g 79 -7.8 -4.56597 | overlap 4157605 4157640 CTGCCTGGCGAAAAA CGCCCGCT AAAC AGCGAGCA GAGATTTTACAGCGT YPA_3700 4157422 - 4158555 + | hypothetical protein YPA_3701 4158552 - 4158890 + | succinate-semialdehyde dehydrogenase YPA_3702 4159085 - 4159558 + | putative ribonuclease YPA_3703 4159563 - 4159844 + | putative ribonuclease inhibitor TERM 4567 4159914 - 4159961 + T 100 -10.5 -5.75342 | gap 1, opp_overlap 4159916 GATTACGCCCGCCAA CAGTATTGAGTCGGGAGCCGGG AGTGA CCCGGC-CCCGCCCGATTACTG TTTTTTTTCAGCCAG TERM 4568 4159959 - 4159916 - T 71 -9.5 -3.02144 | gap 1, opp_overlap 4159914 TTACGCCCGCCAACA GTATTGAGTCGGGAGCCGGG AGTGA CCCGGC-CCCGCCCGATTAC TGTTTTTTTTCAGCC YPA_3704 4160504 - 4159956 - | hypothetical protein TERM 4569 4160267 - 4160282 + g 78 -2.4 -5.30189 | overlap 4160264 4160267 CAATTAACTGGAGCT GGCGGC GGCG GCCTTC TTTTTTGATCTTCTG TERM 4570 4160267 - 4160279 + g 70 -4.7 -4.71318 | overlap 4160264 4160267 CAATTAACTGGAGCT GGCGG CGG CGGCC TTCTTTTTTGATCTT TERM 4571 4160444 - 4160454 + g 84 -2.4 -5.54907 | CCCAGATAATCTCAT CGTC ATC GTCG TTTTTATTTTCTGGG TERM 4572 4160726 - 4160712 - g 70 -10 -3.3344 | ACTCAAGTTGCAGAA CAGCGT AAA ACGCTG GAACAAGCTGTTGCA YPA_3705 4160685 - 4162025 + | peptidase PmbA TERM 4573 4162047 - 4162091 + F 70 -5.1 -4.4773 | gap 2, opp_overlap 4162056, overlap 4162056 TCCTGTCATCTTACT GTTC-CAC-AACTCGCGGGTA GAAAA TACCCGCGAGTTTGTATGCGC TTTTCCTTGATATGA TERM 4574 4162056 - 4162080 + F 100 -15.8 -4.08164 | opp_overlap 4162056, overlap 4162047 CTTACTGTTCCACAA CTCGCGGGTA GAAAA TACCCGCGAG TTTGTATGCGCTTTT TERM 4575 4162080 - 4162056 - f 100 -15.8 -3.29511 | opp_overlap 4162056 4162047 CTTACTGTTCCACAA CTCGCGGGTA GAAAA TACCCGCGAG TTTGTATGCGCTTTT TERM 4576 4162761 - 4162774 + G 71 -6.7 -4.24726 | TGTTTATATTAGATT CTGAC GTTG GTCAG TTTTACCCTTATTGT YPA_3706 4162310 - 4162918 + | hypothetical protein YPA_3707 4163126 - 4163512 + | putative cytochrome TERM 4577 4163637 - 4163669 + T 100 -15.7 -3.83921 | opp_overlap 4163630 4163641 TATAAAAGTGAGCGA TAGAGGGTAATGGCC TGC GGCGGTTACCCTCTA TTATCTTCTATTACC YPA_3708 4164154 - 4163744 - | nucleoside diphosphate kinase regulator TERM 4578 4164088 - 4164075 - G 74 -9.5 -3.54475 | overlap 4164085 GTTGCGACCACAGAA CCGGC AAAA GCCGG TTGCGCTAGCAACGC TERM 4579 4164223 - 4164191 - R 100 -14.1 -5.30339 | opp_overlap 4164196 AGCAAAACATAAAAA CAACACCCCCACGCC ATA GGAGAGGGGGTGTTA GAAAATAGCTTAATG TERM 4580 4164196 - 4164218 + r 76 -10.4 -3.03243 | opp_overlap 4164191 AACATAAAAACAACA CCCCCACGCC ATA GGAGAGGGGG TGTTAGAAAATAGCT TERM 4581 4164422 - 4164388 - R 73 -10 -3.02829 | TATATTTTGCGAATA CGGCTCCATCAGGACA TTT TGCACTGATGGAGTCA CCTATCACCGGCCCT YPA_3709 4166174 - 4164507 - | trehalose-6-phosphate hydrolase TERM 4582 4165521 - 4165507 - G 87 -8.5 -4.84359 | overlap 4165485 CCATCGGTATAAAAA CGGCG GCCAT CGCCG TCCAGATCATTAGGG TERM 4583 4166232 - 4166199 - R 75 -5.9 -4.67353 | gap 1, overlap 4166202 4166203 TTATTCATTGAAAAA TGACCCCGCCAGACGA TCA CCG-CTGGCGGGAGAA CACAACTTATATCGA TERM 4584 4166229 - 4166202 - R 89 -12 -3.26405 | gap 1, overlap 4166199 4166203 TTCATTGAAAAATGA CCCCGCCAGACGA TCA CCG-CTGGCGGGA GAACACAACTTATAT TERM 4585 4166228 - 4166203 - R 91 -13.3 -2.55361 | gap 1, overlap 4166202 4166199 TCATTGAAAAATGAC CCCGCCAGACGA TCA CCG-CTGGCGGG AGAACACAACTTATA YPA_3710 4167684 - 4166269 - | trehalose(maltose)-specific PTS system components IIBC TERM 4586 4166789 - 4166766 - G 70 -8.8 -3.65143 | overlap 4166764 ACAGGAAACCAAATA GTGCCGCACC GACC GGTGCGAAAC TGCCGGTCATCACCG TERM 4587 4167535 - 4167549 + g 76 -7.2 -4.32436 | overlap 4167531 GCCTTTGACCATTGA GAGATT TTC AATCTC TTTTGGTGATGCTAT TERM 4588 4167988 - 4168001 + r 79 -6.7 -4.66938 | opp_overlap 4167988, overlap 4167984 TTTATTTTTATGGAA TGGGA ACGT TCCCA TTTTGTATTGAAGAT treR 4169048 - 4168095 - | trehalose repressor TERM 4589 4168685 - 4168700 + g 70 -9 -3.63073 | opp_overlap 4168682 4168679 AACCGAACAGGATCA CGCCAT CAAC ATGGCG TTGTTGCAGAATATG TERM 4590 4169179 - 4169209 + r 88 -7 -5.15634 | opp_overlap 4169179 CTGGCAGCATAGGAA TACCCTAACG AATTTTCTCAC CGTTAGGGTA TTTTTTACTGCGGTG YPA_3712 4169758 - 4169282 - | hypothetical protein TERM 4591 4169671 - 4169681 + g 79 -6.8 -4.74706 | overlap 4169678 TATCAGGTAATGGGA TGGC GAC GCCA TTTTTGGCTATTGCG TERM 4592 4170045 - 4170006 - R 100 -15 -5.05113 | CGGAGAGAAATAAAA TCACCACATGCGGCTGGC GATA ACCCGCCGTATGCGGTGA TGGGGGAGGGATTAA YPA_3713 4170443 - 4170057 - | hypothetical protein YPA_3714 4171048 - 4170581 - | aspartate carbamoyltransferase regulatory subunit pyrB 4171992 - 4171057 - | aspartate carbamoyltransferase catalytic subunit TERM 4593 4172105 - 4172089 - R 100 -13.7 -6.06529 | GACAGACAAAAAAAA GCCCCTC AAC GAGGGGC CTTACAGGATCGGTT YPA_3716 4172602 - 4172330 - | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YPA_3717 4173453 - 4172599 - | hypothetical protein TERM 4594 4173532 - 4173550 + r 74 -10.3 -2.60496 | overlap 4173533 4173535 TACAAACCGGGGTGT GGTGGGT GCGGA ACCCACC CTCTTTCGAGCCGCA YPA_3718 4174241 - 4173759 - | sugar-specific enzyme IIA component of PTS TERM 4595 4174269 - 4174308 + r 100 -21.6 -2.88249 | opp_overlap 4174258 4174277, overlap 4174277 TTAAGCGCTGTTTAC GCCAGATACCGGTGGGAA TAAA TATCCACCGGTATCTGGC TATGTAGCGAGTGTA YPA_3719 4174532 - 4174359 - | hypothetical protein TERM 4596 4174490 - 4174501 + g 74 -4.4 -4.88646 | CATTCACATGTACCG TTGC TTCT GCAA TTTGTTTTACTTTTT YPA_3720 4174646 - 4174539 - | putative sigma N modulation factor YPA_3721 4176103 - 4174670 - | RNA polymerase factor sigma-54 TERM 4597 4174928 - 4174918 - G 79 -6.8 -4.62336 | opp_overlap 4174911 4174918 ACTTCAGTTCAAAAA TCCC TCG GGGA CTGTGCAAGAATTTC YPA_3722 4176890 - 4176165 - | putative ABC transporter ATP-binding protein YhbG YPA_3723 4177442 - 4176897 - | hypothetical protein YPA_3724 4177989 - 4177426 - | hypothetical protein YPA_3725 4178549 - 4177986 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YPA_3726 4179871 - 4178798 - | D-arabinose 5-phosphate isomerase YPA_3727 4180869 - 4179895 - | putative calcium/sodium:proton antiporter TERM 4598 4180467 - 4180457 - G 70 -2.4 -4.9645 | overlap 4180458 ATCAGAACAATAAAA GCGG CAG CAGC CAAGAGCAAGATGAC YPA_3728 4181134 - 4181952 + | putative ABC transporter ATP-binding protein YrbF YPA_3729 4182170 - 4182952 + | hypothetical protein YPA_3730 4182957 - 4183514 + | hypothetical protein YPA_3731 4183527 - 4184150 + | hypothetical protein TERM 4599 4184280 - 4184256 - g 82 -12.2 -3.5764 | opp_overlap 4184257 AACTGGATCGTGAAA CGCTGTTACC GCTTT GGCAACAGCG TGAAACCTTGCTGGC YPA_3732 4184186 - 4184488 + | putative anti-sigma B factor antagonist TERM 4600 4184527 - 4184555 + F 84 -6.1 -5.04868 | gap 1, opp_overlap 4184527 AGGTAAGATAATCAA GCTCCTGTGCAT AATGGC AT-CACAGGGGC TTTTCTTTAGTTTCA YPA_3733 4184626 - 4184889 + | BolA-like protein YPA_3734 4185043 - 4186305 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 4601 4186389 - 4186365 - T 100 -8.6 -5.27335 | opp_overlap 4186365 TTCGGTAAATAAAAA TGCCAGCC GGTGATTGG GGCTGGCA TTTTTTATGTTTATA TERM 4602 4186365 - 4186389 + T 100 -8.6 -5.59879 | opp_overlap 4186365 TTCGGTAAATAAAAA TGCCAGCC GGTGATTGG GGCTGGCA TTTTTTATGTTTATA YPA_3735 4187637 - 4186486 - | serine endoprotease TERM 4603 4187625 - 4187651 + g 100 -15.2 -4.82901 | overlap 4187626 AATAGCATGAGTTAG GCGGACACAGCA TCG TGCTGTGTCCGA TTTTTGTGCCCAGAA TERM 4604 4187626 - 4187650 + g 100 -18.7 -3.49419 | overlap 4187625 ATAGCATGAGTTAGG CGGACACAGCA TCG TGCTGTGTCCG ATTTTTGTGCCCAGA TERM 4605 4187687 - 4187669 - H 100 -16 -4.36914 | opp_overlap 4187669 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4606 4187669 - 4187687 + H 100 -16 -3.07307 | opp_overlap 4187669 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3736 4187800 - 4188258 + | transposase for the IS1541 insertion element TERM 4607 4188332 - 4188364 + T 95 -11.3 -3.89614 | opp_overlap 4188339, overlap 4188336 4188338 4188339 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTCTGCAAATTAGC TERM 4608 4188336 - 4188360 + T 100 -9.9 -4.55697 | opp_overlap 4188339, overlap 4188332 4188338 4188339 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTCTGCAAAT TERM 4609 4188338 - 4188358 + T 100 -12.5 -3.88703 | opp_overlap 4188339, overlap 4188336 4188332 4188339 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTCTGCAA TERM 4610 4188357 - 4188339 - T 100 -16 -4.8048 | opp_overlap 4188338 4188336 4188332 4188339 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCTGCA TERM 4611 4188339 - 4188357 + T 100 -16 -2.92499 | opp_overlap 4188339, overlap 4188338 4188336 4188332 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCTGCA YPA_3737 4189748 - 4188375 - | protease TERM 4612 4189028 - 4189056 + g 72 -9.7 -3.35992 | gap 1, opp_overlap 4189030 AGCCGATACCGATAT TACCGCCA-CCT GGCGCA AGGATGGCGGTA TTAATTCCGATCAGT YPA_3738 4190423 - 4190019 - | cytochrome d ubiquinol oxidase subunit III TERM 4613 4190448 - 4190459 + H 71 -4.4 -4.7629 | TTTTTTGACTTCATT GTTC AGCA GAAC TTTTTCACTTAATAA YPA_3739 4190647 - 4191774 + | hypothetical protein TERM 4614 4191829 - 4191848 + F 81 -11.4 -2.76249 | AATGCTATTCTATGG CGGGCGAC ATTT GTCGTCCG TACTTAACATGTTTA TERM 4615 4191964 - 4191940 - f 71 -8.8 -3.33162 | opp_overlap 4191944, overlap 4191944 GACCCCACGTTACAA CAAAGTTTTT TTCCC AAAAACTTTG ATAGTGCCAGCATTG TERM 4616 4192288 - 4192271 - g 79 -5.5 -4.91712 | CTGAACGCAGAAAAA GTTGCTG TAAC CGGCAAC AAGCGTACAGACAAG rplM 4192088 - 4192516 + | 50S ribosomal protein L13 rpsI 4192531 - 4192923 + | 30S ribosomal protein S9 TERM 4617 4192976 - 4192960 - f 100 -13.7 -4.62783 | opp_overlap 4192960 GATTGATGGTAAAAA CCCGGTG TCT CACCGGG TTTTTTTATGCCTGA TERM 4618 4192960 - 4192976 + F 100 -13.7 -5.64274 | opp_overlap 4192960 GATTGATGGTAAAAA CCCGGTG TCT CACCGGG TTTTTTTATGCCTGA sspA 4193297 - 4193938 + | stringent starvation protein A TERM 4619 4194440 - 4194405 - g 72 -9.6 -3.41602 | gap 1, opp_overlap 4194432 TTCACCGGATGATAA GCCGCCGCAACCGCCAC GGA GTGGTGGCCGCC-CGGC ATTACGCGTGGTTAA YPA_3743 4193944 - 4194459 + | ClpXP protease specificity-enhancing factor TERM 4620 4194493 - 4194521 + T 70 -5.2 -4.51238 | gap 1, overlap 4194498 ATACAGGCTCTATCT C-TTCAGGGCGGC GTTA GCCGCCCTTATCG TTTCTGTTTTGTGCG TERM 4621 4194498 - 4194515 + T 100 -14.1 -3.69613 | overlap 4194493 GGCTCTATCTCTTCA GGGCGGC GTTA GCCGCCC TTATCGTTTCTGTTT YPA_3744 4195097 - 4194612 - | hypothetical protein TERM 4622 4195471 - 4195508 + r 71 -6.9 -4.23647 | opp_overlap 4195470 4195476, overlap 4195472 ATAAATAGAATAAAT AGAAAGGGCGGGTTC TGTGAATT GAACCCGCCCTAGCG TTTATTGAATGATTT TERM 4623 4195472 - 4195507 + r 77 -10.4 -3.13104 | opp_overlap 4195470 4195476, overlap 4195471 TAAATAGAATAAATA GAAAGGGCGGGTTC TGTGAATT GAACCCGCCCTAGC GTTTATTGAATGATT TERM 4624 4195503 - 4195476 - R 100 -14.2 -4.48483 | opp_overlap 4195472 4195471, overlap 4195470 TAGAATAAATAGAAA GGGCGGGTTC TGTGAATT GAACCCGCCC TAGCGTTTATTGAAT gltD 4196956 - 4195538 - | glutamate synthase subunit beta TERM 4625 4196498 - 4196477 - G 84 -15.1 -2.8632 | overlap 4196469 4196467 TAATACATCAGCACA GGCCAGCCC GGCA GGGCCGGCC CCGATCACGGCCACA TERM 4626 4196804 - 4196839 + g 78 -9.6 -3.89695 | opp_overlap 4196798 4196815 TTCACAGTACGGATT GCCGCAGGACAGGCAG CGAT CGGCCTGTGCTTTGGC TTGTGTTTCTGAGAA gltB 4201423 - 4196966 - | glutamate synthase subunit alpha TERM 4627 4200677 - 4200699 + g 70 -9.8 -3.33419 | overlap 4200676 4200672 4200691 GGCACGCGCCTTGGC CCATTGGCGG TTA CCGGCGATGG TGTTGATTTCGCCGT TERM 4628 4202862 - 4202852 - g 79 -6.8 -4.60924 | opp_overlap 4202857 GAAACCTTGGAAAAA GTGG TCA CCAC CGGTGTTGATGGGAT YPA_3747 4202225 - 4203175 + | hypothetical protein YPA_3748 4203439 - 4205775 + | aerobic respiration control sensor protein ArcB TERM 4629 4205796 - 4205773 - f 93 -4.4 -5.81032 | overlap 4205776 GAAGTTGAAAAAAAA TAACCCCGAC CGAG GCCGGGGTGC GCGAAGACTGCGCCA TERM 4630 4205793 - 4205776 - f 100 -10.5 -4.96028 | overlap 4205773 GTTGAAAAAAAATAA CCCCGAC CGAG GCCGGGG TGCGCGAAGACTGCG YPA_3749 4206017 - 4206670 + | isoprenoid biosynthesis protein mtgA 4206667 - 4207392 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 4631 4207526 - 4207571 + T 71 -6.8 -4.11363 | opp_overlap 4207535, overlap 4207566 GGTATCGATGTGGTG GATAAAAAACGGGCTTGGCG GTTTAG CGCTAAGCCCGTGATAAATC TTATTTAATCTTCTT TERM 4632 4207562 - 4207535 - T 100 -12.7 -5.24129 | opp_overlap 4207526 GTGGTGGATAAAAAA CGGGCTTGGCG GTTTAG CGCTAAGCCCG TGATAAATCTTATTT YPA_3751 4208174 - 4207599 - | hypothetical protein TERM 4633 4208032 - 4208074 + g 85 -7.6 -4.82901 | CTGGCTTCCAGTGTG CCGTCATCTACCTGCGTACC GAT GGTACGTGGATCCGTGGCGG TTTTTGTGGCAACCG YPA_3752 4208775 - 4208185 - | DnaA initiator-associating protein DiaA TERM 4634 4208957 - 4208971 + r 77 -5 -5.00642 | opp_overlap 4208957 TAAATGCTGTTCAAA TTGGTT CCA GACCAA TTTTTCTCTCGCTTG YPA_3753 4209399 - 4209046 - | hypothetical protein TERM 4635 4209171 - 4209134 - G 71 -7.9 -4.07885 | gap 3, opp_overlap 4209127 4209159 4209165, overlap 4209162 GATGTTGTGGCAAAA CTGGC-GCCGC-GTTGTG CCAGC CA-AACAGCGGCGGCCAG ATGTAGCCGTTGTTG TERM 4636 4209319 - 4209285 - G 78 -10 -3.82824 | CATCACGCATAATAA GGTCAATTTCGCCTCC ACG GAAGGCAACATTGGCC GCTTGAAAAACGAGA YPA_3754 4211552 - 4209483 - | hypothetical protein TERM 4637 4211103 - 4211113 + gH 77 -8.2 -4.03995 | opp_overlap 4211099 4211098, overlap 4211101 GGCAAGAATATCAGC CGCC GCT GGCG TATTTTTCTGCGCGA TERM 4638 4211454 - 4211472 + gH 80 -2.5 -5.42259 | gap 1, opp_overlap 4211454, overlap 4211456 GAACGTTGAGGAAAG CAT-ACTG TATC CAGTGATG TTTTTTTCAAGATGC TERM 4639 4212321 - 4212305 - gR 89 -7.2 -5.02074 | overlap 4212306 TTACCGCTGAAAAAA GCCGCC GCATT AGCGGC AGAAATTCATGGAGT TERM 4640 4212323 - 4212306 - gR 82 -10.5 -3.60762 | overlap 4212305 TACCGCTGAAAAAAG CCGCCGC ATTA GCGGCAG AAATTCATGGAGTCA YPA_3755 4211519 - 4212418 + | putative tetrapyrrole methylase TERM 4641 4212823 - 4212848 + Tr 83 -11.9 -2.73124 | opp_overlap 4212828 4212829, overlap 4212829 ACTCCACTCATTCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGGAGGATAGGG TERM 4642 4212843 - 4212828 - TR 70 -6 -4.40358 | opp_overlap 4212823 4212829, overlap 4212829 ACTCATTCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGGAGGA TERM 4643 4212829 - 4212842 + Tr 100 -9.5 -4.98531 | opp_overlap 4212828 4212829, overlap 4212823 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGGAGG TERM 4644 4212842 - 4212829 - TR 72 -9.5 -3.23733 | opp_overlap 4212829 4212823, overlap 4212828 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGGAGG TERM 4645 4212936 - 4212961 + Tr 83 -11.9 -2.73124 | opp_overlap 4212941 4212942, overlap 4212942 ACGCCACTCATTCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGCAGGATAGGG TERM 4646 4212956 - 4212941 - TR 70 -6 -4.40358 | opp_overlap 4212936 4212942, overlap 4212942 ACTCATTCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGCAGGA TERM 4647 4212955 - 4212942 - TR 72 -9.5 -3.23733 | opp_overlap 4212942 4212936, overlap 4212941 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCAGG TERM 4648 4212942 - 4212955 + Tr 100 -9.5 -4.98531 | opp_overlap 4212941 4212942, overlap 4212936 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCAGG TERM 4649 4213049 - 4213074 + Tr 83 -11.9 -2.73124 | opp_overlap 4213054 4213055, overlap 4213055 ACGCCACTCATTCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGCAGGATAGGG TERM 4650 4213069 - 4213054 - TR 70 -6 -4.40358 | opp_overlap 4213049 4213055, overlap 4213055 ACTCATTCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGCAGGA TERM 4651 4213055 - 4213068 + Tr 100 -9.5 -4.98531 | opp_overlap 4213054 4213055, overlap 4213049 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCAGG TERM 4652 4213068 - 4213055 - TR 72 -9.5 -3.23733 | opp_overlap 4213055 4213049, overlap 4213054 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCAGG TERM 4653 4213162 - 4213187 + Tr 83 -11.9 -2.73124 | opp_overlap 4213167 4213168, overlap 4213168 ACGCCACTCATGCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGCAGGATAGGG TERM 4654 4213182 - 4213167 - TR 70 -6 -4.40358 | opp_overlap 4213162 4213168, overlap 4213168 ACTCATGCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGCAGGA TERM 4655 4213181 - 4213168 - TR 72 -9.5 -3.23733 | opp_overlap 4213168 4213162, overlap 4213167 CTCATGCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCAGG TERM 4656 4213168 - 4213181 + Tr 100 -9.5 -4.98531 | opp_overlap 4213167 4213168, overlap 4213162 CTCATGCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCAGG TERM 4657 4213275 - 4213300 + Tr 100 -11.9 -4.09685 | opp_overlap 4213280 4213281, overlap 4213281 ACGCCACTCATGCCA CAAAATCCCGC TTTG GCGGGTTTTTG TTTTACACGATAGGG TERM 4658 4213295 - 4213280 - TR 70 -6 -4.40358 | opp_overlap 4213275 4213281, overlap 4213281 ACTCATGCCACAAAA TCCCGC TTTG GCGGGT TTTTGTTTTACACGA TERM 4659 4213281 - 4213294 + Tr 100 -9.5 -5.45802 | opp_overlap 4213280 4213281, overlap 4213275 CTCATGCCACAAAAT CCCGC TTTG GCGGG TTTTTGTTTTACACG TERM 4660 4213294 - 4213281 - TR 72 -9.5 -3.23733 | opp_overlap 4213281 4213275, overlap 4213280 CTCATGCCACAAAAT CCCGC TTTG GCGGG TTTTTGTTTTACACG YPA_3756 4214059 - 4213355 - | hypothetical protein YPA_3757 4214321 - 4215214 + | LysR family transcriptional regulator TERM 4661 4215274 - 4215299 + T 75 -8.9 -3.6284 | AACGTTCGCTTGCTA CGCCCTTGGCC TTGG GGAAAAGGGCG TTTAGCGTGCTAATT YPA_3758 4216280 - 4215345 - | hypothetical protein YPA_3759 4217075 - 4216296 - | transposase/IS protein TERM 4662 4216994 - 4217008 + g 77 -11.4 -3.3506 | overlap 4217007 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3760 4218097 - 4217075 - | transposase for insertion sequence IS100 TERM 4663 4218119 - 4218101 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_3761 4218154 - 4218498 + | insertion element IS1661 DNA-binding protein TERM 4664 4219318 - 4219300 - g 71 -11 -2.73735 | overlap 4219290 4219288 4219311 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPA_3762 4218552 - 4219337 + | transposase for insertion sequence IS1661 TERM 4665 4219394 - 4219372 - T 71 -9 -3.32844 | GGGTTCAGTGCATAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG YPA_3763 4220123 - 4219692 - | hypothetical protein TERM 4666 4220110 - 4220134 + g 74 -7.9 -4.22524 | GAAACACGGTCACTA CGCGAGAAAAA CAA TTTTATTCGCG TTTCATTTTAACTAT YPA_3764 4220515 - 4220126 - | hypothetical protein YPA_3765 4221272 - 4220898 - | hypothetical protein TERM 4667 4222380 - 4222361 - g 72 -8.6 -3.90291 | gap 1, opp_overlap 4222378 ATCCGCCTAATTAAA GGCAGCCAC ATT GTGG-TGCC TCGGGTTCATAACCA TERM 4668 4222833 - 4222818 - g 71 -6.8 -4.2558 | gap 1 CAGCGTGGACTAAAA CCGGTGC CTT GC-CCGG TGGGGATATCGGCGG TERM 4669 4223173 - 4223159 - g 70 -4.2 -4.70659 | opp_overlap 4223162 GCGCACACTGAAAAA CAACAG GCG CTGCCG CTGGTTTCTTAATAG glpD 4221671 - 4223185 + | glycerol-3-phosphate dehydrogenase TERM 4670 4223274 - 4223303 + T 73 -3.6 -5.0538 | gap 2, opp_overlap 4223274 CAAGAAATTTAAAAA CCCTCTTCAATCGG ATAA CCGC--GAAGAGGG TTTTTTACGGTGGCA TERM 4671 4223303 - 4223274 - T 78 -5.8 -4.86939 | gap 2, opp_overlap 4223274 CAAGAAATTTAAAAA CCCTCTTCAATCGG ATAA CCG-C-GAAGAGGG TTTTTTACGGTGGCA YPA_3767 4225795 - 4223348 - | glycogen phosphorylase TERM 4672 4224025 - 4224015 - G 72 -8.2 -3.84406 | opp_overlap 4224015 TTGGCATTATAATAA GCCG AGG CGGC TTTACCGGCAAAAAT TERM 4673 4224377 - 4224402 + g 100 -11.1 -4.63218 | opp_overlap 4224380, overlap 4224355 GTTGGCTAACCCCAA CCAGCGCCGTG GTGT CACGCCGTTGG TTTTATTGCAGAAAC glgA 4227378 - 4225948 - | glycogen synthase glgC 4228876 - 4227446 - | glucose-1-phosphate adenylyltransferase YPA_3770 4230874 - 4228886 - | glycogen debranching enzyme TERM 4674 4228986 - 4228970 - G 74 -10.1 -3.63627 | GTCTGACACCCCAAA GGGAGGA ATC CCCTCCC ATTCCCCTTCAGGTA YPA_3771 4233059 - 4230876 - | glycogen branching enzyme YPA_3772 4233565 - 4235262 + | hypothetical protein TERM 4675 4235368 - 4235335 - T 75 -5.4 -4.90296 | opp_overlap 4235333 4235336 4235339, overlap 4235336 4235339 AAAACCCTATAAAAA TTAATGCCAGAG TATAACCCAC CTCTGGCATTAC TATTATTCCTGACAC TERM 4676 4235367 - 4235336 - T 73 -8.9 -3.52551 | opp_overlap 4235336 4235333 4235339, overlap 4235335 4235339 AAACCCTATAAAAAT TAATGCCAGAG TATAACCCAC CTCTGGCATTA CTATTATTCCTGACA YPA_3773 4244436 - 4235470 - | putative invasin TERM 4677 4240429 - 4240408 - G 72 -8 -3.90112 | GTTGGCCGAACTAAA GACCACCG CAGCAC CGGTGATC GGGTTGCCGTTAGCA TERM 4678 4241296 - 4241275 - G 72 -8 -3.90112 | GTTGGCCGAACTAAA GACCACCG CAGCAC CGGTGATC GGGTTGCCGTTAGCA TERM 4679 4245428 - 4245412 - H 75 -3.1 -5.08824 | TCTTCACGCAAAAAA TAAAAAA CCA TTTTCTA TACGGCATTCAATTT TERM 4680 4245757 - 4245738 - H 100 -10 -5.63645 | opp_overlap 4245738 4245736 4245731 TTAAAATATAAAAAA CCCTGACC ATAA GATCAGGG TGCTTTGTTGTTCTT YPA_3774 4245815 - 4246156 + | hypothetical protein YPA_3775 4246907 - 4246533 - | hypothetical protein YPA_3776 4247429 - 4247148 - | hypothetical protein TERM 4681 4247556 - 4247539 - R 100 -9.8 -4.60949 | CATACGATAAACAAA GCCCGC ACTCTG GCGGGC TTACGGGTCTTCCAC YPA_3777 4248701 - 4247598 - | aspartate-semialdehyde dehydrogenase TERM 4682 4249075 - 4249091 + G 79 -5.1 -4.93968 | overlap 4249077 TGACTGAGATGATTG CAGCAAC TGT GTTGCTA TTTTTAATTATGGAT TERM 4683 4249077 - 4249089 + G 71 -7.7 -4.08682 | overlap 4249075 ACTGAGATGATTGCA GCAAC TGT GTTGC TATTTTTAATTATGG YPA_3778 4249059 - 4249652 + | dITP- and XTP- hydrolyzing protein TERM 4684 4249737 - 4249723 - T 80 -2.8 -5.47399 | opp_overlap 4249723, overlap 4249736 TCAACGTCAAAAAAA CCAATT CAA AATGGG TCTTTGACTGCTGAC TERM 4685 4249869 - 4249882 + T 79 -8.1 -4.3534 | opp_overlap 4249863 TGTCAATAACCTCAA GCCTC TTCT GAGGC TTTTAATAATTAGAC YPA_3779 4250281 - 4249892 - | hypothetical protein TERM 4686 4249919 - 4249929 + g 80 -3.2 -5.3671 | ATCATCAGGGTAAGC GGCT TTG AGTC TTTTTTGCTTGTCTT YPA_3780 4250670 - 4250503 - | adhesin/hemolysin YPA_3781 4250900 - 4250667 - | hypothetical protein YPA_3782 4251585 - 4251082 - | putative gluconokinase YPA_3783 4251802 - 4253118 + | putative gluconate permease YPA_3784 4254205 - 4253210 - | gluconate utilization system Gnt-I transcriptional repressor TERM 4687 4254279 - 4254256 - R 82 -6 -4.93877 | gap 1, opp_overlap 4254256, overlap 4254251 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA TERM 4688 4254256 - 4254279 + r 100 -8.2 -4.87291 | gap 1, opp_overlap 4254251 4254256 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA YPA_3785 4255029 - 4254334 - | hypothetical protein TERM 4689 4255270 - 4255254 - H 100 -9.4 -6.17292 | AAAGGCAAAAAAAAA GCCAGC ACCCG GCTGGC TAAGTAAACACTGGA YPA_3786 4255793 - 4256530 + | putative response regulator protein YPA_3787 4257722 - 4256715 - | PfkB family carbohydrate kinase TERM 4690 4257247 - 4257230 - G 76 -12.7 -2.62933 | overlap 4257218 CAAGCTGCGACATCA GCGCCAG TAGT CTGGCGC TACGAGTACCGTACT YPA_3788 4258592 - 4257732 - | hypothetical protein YPA_3789 4259301 - 4258618 - | hypothetical protein YPA_3790 4260320 - 4259376 - | sugar-binding transport protein YPA_3791 4261343 - 4260351 - | sugar transport system permease protein TERM 4691 4261301 - 4261276 - G 77 -9.9 -3.72695 | opp_overlap 4261295, overlap 4261287 ACGGTTTGCAGTAAA TCGCTAAAAAA CGCT TTTTTCAGCGA GGCCGATTTTGCCAC TERM 4692 4261300 - 4261287 - G 78 -3.8 -5.07107 | opp_overlap 4261295, overlap 4261276 TAAATCGCTAAAAAA CGCT TTTTTC AGCG AGGCCGATTTTGCCA YPA_3792 4262859 - 4261336 - | sugar transport ATP-binding protein TERM 4693 4263207 - 4263185 - g 71 -6.3 -4.37658 | gap 1 AAGCCGCTTACAAAA GCAG-GTCCA GGAG CGGACACTGC GCGATATGTCAAGCA YPA_3793 4263048 - 4265603 + | putative hybrid two-component system regulatory protein YPA_3794 4267121 - 4265739 - | hypothetical protein TERM 4694 4266634 - 4266646 + g 76 -3.3 -5.14563 | opp_overlap 4266635, overlap 4266635 GAATCATCACAAAAA AGCTG CCC CAGCG TTTTTTCATGCCAGG TERM 4695 4266645 - 4266635 - G 100 -6.8 -5.33785 | opp_overlap 4266635 4266634 AATCATCACAAAAAA GCTG CCC CAGC GTTTTTTCATGCCAG YPA_3795 4267147 - 4268742 + | phosphate transport protein TERM 4696 4268858 - 4268838 - f 100 -8.9 -5.15167 | opp_overlap 4268838 GATGAGCAATAAAAA GGCGGCCTA AAT CAGGTCGCC TTTTTTGTGCCCAGA TERM 4697 4268838 - 4268858 + F 100 -10.4 -5.24129 | opp_overlap 4268838 GATGAGCAATAAAAA GGCGGCCT AAATC AGGTCGCC TTTTTTGTGCCCAGA TERM 4698 4268895 - 4268877 - f 100 -16 -4.36914 | opp_overlap 4268877 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4699 4268877 - 4268895 + F 100 -16 -3.07307 | opp_overlap 4268877 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_3796 4269008 - 4269466 + | transposase for the IS1541 insertion element TERM 4700 4269544 - 4269568 + T 100 -9.9 -4.43642 | opp_overlap 4269547, overlap 4269546 4269547 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTAATTCTTTT TERM 4701 4269546 - 4269566 + T 100 -12.5 -3.78931 | opp_overlap 4269547, overlap 4269544 4269547 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTAATTCTT TERM 4702 4269547 - 4269565 + T 100 -16 -2.85732 | opp_overlap 4269547, overlap 4269546 4269544 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAATTCT TERM 4703 4269565 - 4269547 - T 100 -16 -4.8048 | opp_overlap 4269547 4269546 4269544 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAATTCT YPA_3797 4269934 - 4269599 - | universal stress protein UspB YPA_3798 4270642 - 4271088 + | universal stress protein A TERM 4704 4271116 - 4271136 + F 100 -11.8 -4.91109 | opp_overlap 4271116 TTGAGTAACGTTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4705 4271136 - 4271116 - f 78 -9.6 -3.67976 | opp_overlap 4271116 TTGAGTAACGTTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4706 4271901 - 4271889 - g 74 -4.9 -4.77036 | TGGCATGATGAAAAA GTTAT CCA ATAAC ACCGCTTGCGTCTTT YPA_3799 4271335 - 4272678 + | glutamate dehydrogenase YPA_3800 4272932 - 4274260 + | metalloprotease TERM 4707 4274335 - 4274320 - T 70 -6 -4.37092 | overlap 4274321 ATTCGGGTGAGAAAA TGCCGC TAAC GCGGCG GCGTCACCGATGAAG TERM 4708 4274334 - 4274321 - T 72 -9.5 -3.21934 | overlap 4274320 TTCGGGTGAGAAAAT GCCGC TAAC GCGGC GGCGTCACCGATGAA YPA_3801 4275095 - 4274325 - | putative methyltransferase TERM 4709 4275059 - 4275042 - G 93 -14.1 -3.7319 | opp_overlap 4275042 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA TERM 4710 4275042 - 4275059 + g 82 -14.1 -2.74012 | opp_overlap 4275042 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA YPA_3802 4277141 - 4275099 - | oligopeptidase A YPA_3803 4277287 - 4277442 + | hypothetical protein TERM 4711 4277991 - 4277981 - g 71 -5.4 -4.58773 | CGTATGAAATGAAAA CTGA TTA TCAG GATGTGGTGAAAGGT YPA_3804 4277470 - 4278312 + | hypothetical protein TERM 4712 4279218 - 4279208 - g 70 -4.6 -4.7254 | overlap 4279194 4279209 4279210 AGCGGTTATCAAAAA CGCC GAT GGCA GCCTGACGCTGCAAT TERM 4713 4279444 - 4279456 + G 82 -10.5 -3.86524 | overlap 4279455 CCCCGGTTGCCGTTG CGGCG GGC CGCCG TTTGTCCGAACGTCT YPA_3805 4278483 - 4279850 + | glutathione reductase TERM 4714 4279860 - 4279897 + F 95 -11.3 -3.89524 | gap 1, opp_overlap 4279851, overlap 4279862 AGATGATTTCGTTAC TATGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCATG TTTCTGAAATACACT TERM 4715 4279862 - 4279895 + F 89 -11.7 -3.53733 | gap 1, opp_overlap 4279851, overlap 4279860 ATGATTTCGTTACTA TGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCA TGTTTCTGAAATACA TERM 4716 4279915 - 4279941 + F 75 -5.9 -4.70583 | opp_overlap 4279915 TCTGAAATACACTAA GCCAGGTTG AAAATGAGC TAACCTGGC TTTTATCTTAATAGA TERM 4717 4280730 - 4280745 + G 71 -6 -4.36262 | opp_overlap 4280724, overlap 4280729 TGCGCAAATTGTATG CGCTGC TACA GCCGCG TTTTAGTCTGAATAT YPA_3806 4280042 - 4281169 + | putative regulatory protein YPA_3807 4281347 - 4282615 + | GntP family permease YPA_3808 4282626 - 4283762 + | putative glycerate kinase TERM 4718 4283898 - 4283867 - T 70 -7.2 -3.74872 | opp_overlap 4283865 4283894, overlap 4283869 AGGGACTTTATCAAA TACCGACGGTCAGA TATC TCTGGCCGTTGGGA CATCCTATTTTCCAC TERM 4719 4283896 - 4283869 - T 78 -9.8 -3.4582 | opp_overlap 4283865 4283894, overlap 4283867 GGACTTTATCAAATA CCGACGGTCAGA TATC TCTGGCCGTTGG GACATCCTATTTTCC YPA_3809 4284514 - 4284008 - | hypothetical protein TERM 4720 4284302 - 4284312 + g 74 -2.6 -5.093 | opp_overlap 4284296 AACACCATATTTTTC TTTT AAA AAAA TTTTGTTATTTTCCC YPA_3810 4285079 - 4284582 - | hypothetical protein TERM 4721 4285068 - 4285078 + g 82 -4 -5.24291 | TAAGATATTGTATTT TGTT TTT AACA TTTTATTTTCGTTTT YPA_3811 4285950 - 4285081 - | hypothetical protein TERM 4722 4285422 - 4285456 + g 71 -5.3 -4.52589 | gap 1 TCATCATTCCTTTGT TATTGATAGG-ATAAT GACC ATTATTCCAATCAATA TTTTCTATCAAAGCA TERM 4723 4286025 - 4286001 - R 100 -12.1 -3.80625 | CCGTCATAACGCAAA GCGGCATCCAG TAA CAAGATGCCGC CCCAAATCATTATCA YPA_3812 4289250 - 4286038 - | putative autotransporter protein TERM 4724 4286727 - 4286737 + g 79 -6.8 -4.63527 | opp_overlap 4286711, overlap 4286711 4286710 CGCCAGTCACTTGAG TGCC TGC GGCA TTTTTGGCCTGATAG TERM 4725 4288117 - 4288129 + g 73 -2.7 -5.0538 | GTTATTCCCTTTAGT TATCA CCG TGGTA TTTTTTACGATAGCG TERM 4726 4290034 - 4290018 - g 83 -5.1 -5.08011 | AAAACCGGCAAAAAA GCCATCT CTC ATATGGC CTGCCTCAGTGATCG TERM 4727 4290710 - 4290699 - g 85 -3.6 -5.4756 | AAGCCGAAGAAAAAA GCGC TGTT ACGC GGAGCCCTCATTGCC YPA_3813 4289928 - 4291010 + | hypothetical protein TERM 4728 4291690 - 4291702 + G 76 -3.3 -5.1861 | TGGCAATAACCGCAC TACCC TCT GGGGA TTTTTTACTGCTGGC YPA_3814 4291014 - 4291811 + | CDP-diacylglycerol pyrophosphatase YPA_3815 4294004 - 4291788 - | hypothetical protein TERM 4729 4293580 - 4293562 - G 70 -9.6 -3.33151 | overlap 4293560 CGTTGCAAATGAATA TCTGGCTG CGT CAGCCAAA GGCGGGGGATACGAA TERM 4730 4294298 - 4294283 - R 80 -9 -3.98159 | CAGGAGAAGATGAAA GGCGAT CATT ATCGCC TTAGGGAGCGTTAGC YPA_3816 4295154 - 4294309 - | EAL domain-containing protein YPA_3817 4295238 - 4295573 + | putative tautomerase TERM 4731 4295646 - 4295628 - f 79 -3.2 -5.34555 | opp_overlap 4295629, overlap 4295621 4295629 TTACATCATAAAAAA TTTAAAAC ACC GTTTTAAT CCTATTGACTCTGGA YPA_3818 4295852 - 4296796 + | 2-dehydro-3-deoxygluconokinase TERM 4732 4296883 - 4296828 - T 86 -11.3 -3.38991 | gap 1, opp_overlap 4296836 4296882, overlap 4296826 AGGCCGCGAATAACA GACGTTAA-TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCATTTTACGCC TGGCTAACGTGGCCT TERM 4733 4296836 - 4296874 + T 100 -12.5 -4.11692 | opp_overlap 4296828 4296826 AATAACAGACGTTAA TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCA TTTTACGCCTGGCTA YPA_3819 4298459 - 4296960 - | insulinase family protease TERM 4734 4297298 - 4297320 + g 86 -7 -5.05601 | TACGCGCATAGGTGG CGAACAACTT ACT GAGTTGGTCG TTTTTCTGTGTCATC TERM 4735 4297934 - 4297903 - G 74 -8.6 -4.00042 | opp_overlap 4297906, overlap 4297906 TGGCCGATTAAAGAA GAACCTTTGAGGCG ATAA CGCCACCACGGTTC CTGAATATTTTGTGG TERM 4736 4298236 - 4298224 - G 73 -9.1 -3.77464 | opp_overlap 4298223 4298217 4298215 AGACGAGGCAGTAAA TGGGC AAA GCCCA CTTCCTGTGTATTTT TERM 4737 4298781 - 4298751 - R 100 -17.7 -2.9294 | overlap 4298769 GACATTATGCAGAGA CGCTACCAGTGAC AGCAA GCCACTGGTAGCG AATTGAAGGGAGAAA YPA_3820 4300113 - 4298824 - | C4-dicarboxylate transporter DctA TERM 4738 4300514 - 4300543 + r 76 -10.7 -2.71791 | opp_overlap 4300512 4300508, overlap 4300513 GGGATAGAACTTACA GGCTCCTGTGCAA TAAC TAGCACAGGAGCG GTTTACGGCAGCGAT YPA_3821 4301047 - 4300568 - | hypothetical protein TERM 4739 4300685 - 4300709 + g 70 -2.8 -4.84017 | opp_overlap 4300694, overlap 4300686 ATATTTGGCGTTGAT AGGCGAAAAG GTCAA CTTTTCACCC TTTTTGTCCGCAGTT YPA_3822 4302890 - 4301172 - | periplasmic pectate lyase precursor TERM 4740 4303087 - 4303064 - R 72 -9.5 -3.14344 | opp_overlap 4303064 4303077 4303082 GACTCGGCCCATCAA GGGGCCTCG CCTCTT CGAGGCCGC AGCAAGCAGCCTTCC YPA_3823 4303840 - 4303136 - | hypothetical protein YPA_3824 4306666 - 4304480 - | biofilm formation regulator HmsP YPA_3825 4307729 - 4306809 - | endo-1,4-D-glucanase dppF 4309103 - 4308027 - | dipeptide transporter ATP-binding subunit dppD 4310080 - 4309100 - | dipeptide transporter ATP-binding subunit YPA_3828 4310996 - 4310094 - | dipeptide transporter YPA_3829 4312025 - 4311078 - | dipeptide transport system permease protein TERM 4741 4312049 - 4312074 + r 75 -8.9 -3.64487 | opp_overlap 4312048 4312049 CTCTCTGTGTAGAAT GCCGGGCTGCT CATA GGCAACCTGGC TTATTAAACCTCTCC TERM 4742 4312293 - 4312260 - R 73 -5.9 -4.50159 | overlap 4312262 TTTAACCTAAATAAA TAGACCGATGAACGT TGAT ACGCACACCGGTCCG GTATAAGGGTAAAAT TERM 4743 4312291 - 4312262 - R 88 -10.7 -3.8535 | overlap 4312260 TAACCTAAATAAATA GACCGATGAACGT TGAT ACGCACACCGGTC CGGTATAAGGGTAAA YPA_3830 4313915 - 4312308 - | periplasmic dipeptide transport protein YPA_3831 4316347 - 4314584 - | putative hemolysin activator protein TERM 4744 4316420 - 4316399 - R 70 -3.7 -4.90918 | overlap 4316394 ACAAAATCAATAAAA GTTAGCCAC GAAA GCAACTAAC TTTAAATAAAAAATC YPA_3832 4317847 - 4316456 - | hypothetical protein TERM 4745 4318166 - 4318117 - R 100 -11.5 -5.65927 | gap 1, opp_overlap 4318132 4318163, overlap 4318118 4318132 GACGCAAAGAAAAAA TGGCACA-ATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATGCGCCT ATAAGGCTCTGTTAC TERM 4746 4318165 - 4318118 - R 100 -15 -3.9793 | gap 1, opp_overlap 4318132 4318163, overlap 4318117 4318132 ACGCAAAGAAAAAAT GGCACA-ATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATGCGCC TATAAGGCTCTGTTA TERM 4747 4318150 - 4318132 - R 100 -16 -2.85008 | opp_overlap 4318132, overlap 4318118 4318117 TGGCACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4748 4318132 - 4318150 + r 100 -16 -4.8048 | opp_overlap 4318132 4318118 4318117 TGGCACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPA_3833 4318689 - 4318231 - | transposase for the IS1541 insertion element TERM 4749 4318820 - 4318802 - R 100 -16 -3.07307 | opp_overlap 4318802 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4750 4318802 - 4318820 + r 100 -16 -4.36914 | opp_overlap 4318802 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4751 4318859 - 4318840 - R 100 -13.6 -5.60993 | opp_overlap 4318840 CTGGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4752 4318840 - 4318859 + r 100 -13.6 -3.78904 | opp_overlap 4318840 CTGGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4753 4319037 - 4319001 - R 70 -8.1 -3.62775 | gap 1, opp_overlap 4319004, overlap 4319002 4319027 ATCACTTTTTAATAA CCTGCGGATGACTGCT GTTAAA AGCA-TCACCCGCAGT GAAAATGGCCGCCTT TERM 4754 4319036 - 4319002 - R 81 -11.6 -2.77344 | gap 1, opp_overlap 4319004, overlap 4319001 4319027 TCACTTTTTAATAAC CTGCGGATGACTGCT GTTAAA AGCA-TCACCCGCAG TGAAAATGGCCGCCT YPA_3834 4320394 - 4319063 - | regulatory protein UhpC TERM 4755 4319266 - 4319246 - G 71 -6.7 -4.21351 | opp_overlap 4319249 AAATAGCCCAACAAA GCCGGTTGC AGC GCCAGCGGC ATCCTTATGAGAGCA YPA_3835 4321199 - 4320489 - | ATP-binding region, ATPase-like YPA_3836 4322073 - 4321294 - | transposase/IS protein TERM 4756 4321992 - 4322006 + g 77 -11.4 -3.3506 | overlap 4322005 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3837 4323095 - 4322073 - | transposase for insertion sequence IS100 TERM 4757 4323117 - 4323099 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_3838 4323165 - 4324001 + | ATPase TERM 4758 4324149 - 4324120 - T 70 -9.3 -2.88861 | opp_overlap 4324126, overlap 4324125 4324126 TAGTAGCCTGACAGA TAGAAGGGCCTGC AATC GCAGGCCTTTTTA GTCAGGGTATTTCGC TERM 4759 4324144 - 4324125 - T 78 -9.2 -3.64198 | opp_overlap 4324126, overlap 4324120 4324126 GCCTGACAGATAGAA GGGCCTGC AATC GCAGGCCT TTTTAGTCAGGGTAT TERM 4760 4324126 - 4324143 + T 100 -12.7 -4.72986 | opp_overlap 4324125 4324120 4324126 CCTGACAGATAGAAG GGCCTGC AATC GCAGGCC TTTTTAGTCAGGGTA TERM 4761 4324143 - 4324126 - T 89 -12.7 -2.78197 | opp_overlap 4324126, overlap 4324125 4324120 CCTGACAGATAGAAG GGCCTGC AATC GCAGGCC TTTTTAGTCAGGGTA YPA_3839 4325277 - 4324147 - | hypothetical protein TERM 4762 4325299 - 4325327 + r 73 -8.2 -3.72695 | overlap 4325302 4325312 CTCCCAACCGGAGAG TGAGCCGATTAG CCTCA TTATTCGGCTCA TTTGGTGAGCCGAAT TERM 4763 4325302 - 4325358 + r 76 -10.9 -2.67992 | overlap 4325299 4325312 4325333 CCAACCGGAGAGTGA GCCGATTAGCCTCATTATTCGGCTCAT TTG GTGAGCCGAATAGCCAGTATATTCGGC TCATGTGATGATATC TERM 4764 4325312 - 4325348 + r 72 -9.5 -3.09289 | overlap 4325299 4325302 4325333 AGTGAGCCGATTAGC CTCATTATTCGGCTCAT TTG GTGAGCCGAATAGCCAG TATATTCGGCTCATG TERM 4765 4325333 - 4325361 + r 83 -11.9 -2.84634 | overlap 4325312 4325302 ATTCGGCTCATTTGG TGAGCCGAATA GCCAGTA TATTCGGCTCA TGTGATGATATCCAG YPA_3840 4326705 - 4325434 - | nicotinamide-nucleotide adenylyltransferase TERM 4766 4326647 - 4326663 + g 73 -2.9 -4.93547 | overlap 4326648 CTGGCCTCAGCCACC TGCTGTA AGG TGCAGCC TTTTTGCTTAATTGC TERM 4767 4326754 - 4326741 - R 71 -4.5 -4.74052 | ACTAAACAAAAATAA CACAG TATG CTGCG GGATTGGCACTATTA YPA_3841 4328246 - 4326864 - | DNA repair protein RadA TERM 4768 4327457 - 4327470 + g 76 -5.2 -4.87665 | CACCCAGTTCGTTAA CCGC ACCAAA GCGG TTTTTGTGGCTACGC serB 4329314 - 4328334 - | phosphoserine phosphatase TERM 4769 4329504 - 4329486 - H 73 -8.8 -3.51597 | overlap 4329487 AAGGGTGAATCAGAA CCGCTGCG TCA CGCAGCAA CATCAAGTATGCAGG TERM 4770 4329503 - 4329487 - H 71 -10.1 -2.70476 | overlap 4329486 AGGGTGAATCAGAAC CGCTGCG TCA CGCAGCA ACATCAAGTATGCAG YPA_3843 4329544 - 4330245 + | hypothetical protein TERM 4771 4330319 - 4330284 - T 79 -7.6 -4.31293 | overlap 4330288 TCAGAGAGGAATAAA TCAATTCAGCGGCAGA GATC TCTACCGCTGAAGAAA GAAAAAACCGCTGGA TERM 4772 4330315 - 4330288 - T 100 -15 -3.71527 | overlap 4330284 AGAGGAATAAATCAA TTCAGCGGCAGA GATC TCTACCGCTGAA GAAAGAAAAAACCGC deoD 4331076 - 4330357 - | purine nucleoside phosphorylase YPA_3845 4332424 - 4331201 - | phosphopentomutase YPA_3846 4333428 - 4332556 - | thymidine phosphorylase YPA_3847 4333967 - 4333332 - | hypothetical protein YPA_3848 4334792 - 4333995 - | deoxyribose-phosphate aldolase TERM 4773 4335188 - 4335203 + r 76 -7.6 -4.21439 | ATTTGAGCACGTTAG CACATC ATGA GATGTG TTTATCTTCACATTA TERM 4774 4335301 - 4335327 + r 79 -11 -3.15544 | opp_overlap 4335323 TCTATTGGCCCCGAT TACGCTATTCGT ATC AAGAATAGCGTA TTGGTGAGAATACGC TERM 4775 4335353 - 4335375 + r 83 -12.1 -2.61383 | opp_overlap 4335352, overlap 4335352 TACGCCTGATAGCAT GTGCCGTTT GACAA AAACGGCAC CTTATACATCACAGT YPA_3849 4336655 - 4335384 - | putative Na+ dependent nucleoside transporter-family protein TERM 4776 4336906 - 4336932 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4336895, overlap 4336901 4336907 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4777 4336907 - 4336933 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4336895, overlap 4336901 4336906 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPA_3850 4337999 - 4337190 - | putative metalloenzyme YPA_3851 4339283 - 4338015 - | hypothetical protein YPA_3852 4339521 - 4339360 - | hypothetical protein TERM 4778 4339570 - 4339549 - R 72 -8 -3.82946 | opp_overlap 4339549 4339548 CCAGTTTAAAGATAA GGTGCCTG ATTAAA CAGACACC CTTTCATTTGGCTCT YPA_3853 4340302 - 4339688 - | periplasmic protein prfC 4342218 - 4340629 - | peptide chain release factor 3 TERM 4779 4341765 - 4341789 + g 79 -9.3 -4.2461 | CATCCAGAACTTCCA TTGGATCACGA ATT TCGCGGTCCAA TTTGTTCATAAAGGT TERM 4780 4342000 - 4342026 + g 82 -6.6 -4.81851 | opp_overlap 4341991, overlap 4341985 4341984 CGGAAACTGCATTAC CGACGTGGTA ATGGAGA TACCGCGTTG TTTTTCCATTTCCAT TERM 4781 4342416 - 4342392 - R 84 -3.6 -5.43329 | gap 2, opp_overlap 4342412, overlap 4342393 AAAAACAAAATAAAA CGGCGCTATGCC ATT GGCA-A-CGCCA TCATAATGGCATCTT rimI 4342882 - 4342397 - | ribosomal-protein-alanine N-acetyltransferase TERM 4782 4342725 - 4342749 + gr 80 -4.2 -5.09895 | TTAAAATTGAGGTAC CGGTCGCC CTGATTACT GGCGAACG TTTTTTCCGTCCATG YPA_3856 4343222 - 4342785 - | DNA polymerase III subunit psi TERM 4783 4342909 - 4342892 - GH 75 -8.4 -3.87815 | opp_overlap 4342892 4342885 CCGCATCTTGATAAA GCCCAG CTAATT CTGGGC TATGTAATTGTGCAC TERM 4784 4343441 - 4343427 - g 70 -10 -3.24924 | opp_overlap 4343426 4343427, overlap 4343425 CGGTGATTTACAAGA TGCGCT GCC AGCGCA ATTTGATGCAGCCGG TERM 4785 4344254 - 4344282 + G 77 -9.5 -3.72576 | TAGCGAACTCCTTCC TGCCGTATCCTGC CTT GCTGGATGCCGCA TTTGGTAGCCACGAA rsmC 4343335 - 4344378 + | 16S ribosomal RNA m2G1207 methyltransferase YPA_3859 4345178 - 4344891 - | hypothetical protein TERM 4786 4344983 - 4344969 - G 83 -5.6 -5.1356 | TGGCAGTAACAAAAA GTGCCG CAA CCGCAC GTGGTACAACATGCT YPA_3860 4345472 - 4346644 + | HmsT protein YPA_3861 4348270 - 4347185 - | putative pectinesterase YPA_3862 4348579 - 4348926 + | hypothetical protein YPA_3863 4349073 - 4349405 + | hypothetical protein TERM 4787 4349726 - 4349703 - T 100 -11 -5.75342 | GTTCGTCAAAAAAAA CAGCCCCG TGACTGAC CGGGGCTG CTGAAATTACTTTTA YPA_3864 4352852 - 4349766 - | putative multi-drug efflux protein TERM 4788 4351042 - 4351032 - G 74 -8.2 -3.9712 | GTAGGTCAGCATAAA GCGC ATT GCGC CCTGACCTATGGTTG TERM 4789 4351318 - 4351334 + g 70 -8.7 -3.56099 | opp_overlap 4351318 4351317 4351308, overlap 4351308 4351321 TAATAGCGGAATAAC CAGCCGT CAT ACGGTTG TTTAACCGGCTTATC TERM 4790 4351355 - 4351367 + g 79 -5.5 -4.93365 | CCGGCTTATCCGCAT CAGCT TCA GGCTG TTTTTGGTTCTGGAA YPA_3865 4353934 - 4352852 - | putative lipoprotein YPA_3866 4354219 - 4353986 - | hypothetical protein TERM 4791 4354819 - 4354799 - R 100 -14 -3.67976 | GCCATTAACGTTAAA CGGCACCC ATAAA GGGTGCCG CGGCTAAACAAAAAA TERM 4792 4354920 - 4354946 + r 70 -7.2 -3.74872 | gap 1, opp_overlap 4354908, overlap 4354919 TATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCCCTGCCT YPA_3867 4356261 - 4355029 - | putative O-antigen biosynthesis protein TERM 4793 4355428 - 4355417 - G 73 -5.8 -4.5442 | GCTTCAACCACAAAA GCAG AACG CTGC CCCATGGAGGAATTA TERM 4794 4356159 - 4356141 - G 70 -4.6 -4.59414 | TGATAATAATCAAAA CCAATGAA ACA CTCATTAG CTGATTATTCGTTGG YPA_3868 4357502 - 4356309 - | putative lipopolysaccharide core biosynthesis protein TERM 4795 4357069 - 4357057 - G 71 -6.9 -4.15044 | GTGGGTTTTAACAAA CGGCA ATA CGCCG CAGCCCGCCATTGAT TERM 4796 4357125 - 4357161 + g 70 -8 -3.79747 | overlap 4357126 ATGTTGTTTTTTTAG GGCGCTAAACAGTG CTTTTTCGC CACTGATTTGCGCC TTTAATCCTGCATGC TERM 4797 4357700 - 4357734 + r 100 -10.7 -4.29928 | gap 1, opp_overlap 4357675 ACGCAGCACGTGACG GCGGCGAGCATTGCCC CGAA GCGCAA-GCTGGCCGC TTTTCGCTATTAATT YPA_3869 4359410 - 4357818 - | autoinducer-2 (AI-2) kinase YPA_3870 4360261 - 4359581 - | putative transcriptional repressor YPA_3871 4360493 - 4360344 - | hypothetical protein TERM 4798 4360470 - 4360458 - GH 70 -3.3 -4.77567 | overlap 4360459 ATCGTGATAATAAAA CCACG CAA CGCGA GCGAGCAGTTCCTCT YPA_3872 4360492 - 4360803 + | hypothetical protein TERM 4799 4361933 - 4361916 - g 79 -9.1 -4.26076 | opp_overlap 4361925, overlap 4361904 TCACGGCGATGAAAA CCGCCAA TCGC CTGGCGG CGGGCTTAGTGTATT YPA_3873 4360913 - 4362496 + | putative ABC transporter ATP-binding protein YPA_3874 4362490 - 4363545 + | putative ABC transporter permease protein YPA_3875 4363542 - 4364543 + | putative ABC transporter permease protein YPA_3876 4364609 - 4365628 + | putative periplasmic solute-binding protein TERM 4800 4365795 - 4365810 + G 71 -5.4 -4.56597 | gap 1, opp_overlap 4365795, overlap 4365797 GATTGGGGAATGCAA TCC-CGC CTG GCGCGGA TTTTTAACCCGAAAA TERM 4801 4366087 - 4366107 + G 78 -12.5 -3.0094 | CTGTACGGCTCAATG CCTGCGCGG TCG CCGCACAGG TGTATATCGGTACGG YPA_3877 4365684 - 4366559 + | aldolase YPA_3878 4366623 - 4366913 + | autoinducer-2 (AI-2) modifying protein LsrG YPA_3879 4367214 - 4367705 + | hypothetical protein YPA_3880 4370307 - 4367767 - | putative phosphoenolpyruvate-protein phosphotransferase TERM 4802 4368074 - 4368060 - G 76 -4.2 -5.05782 | ATCCAGTGGAAAAAA GGGC TTCTCGC GCCC ACACATCCGCAGCCA TERM 4803 4370476 - 4370489 + H 78 -5.3 -4.91511 | TCATTGCCGGGAAGT TGAGA TGGC TCTCA TTTTTCTGATGACAT YPA_3881 4370672 - 4371754 + | putative fructose-like permease EIIC subunit 2 TERM 4804 4371972 - 4371993 + F 95 -13.1 -3.15544 | overlap 4371989 TGCTAGCCCGCAGGG TGAGCCTCA AGGA TGAGGCTCA TTAGTCCCGATGAGC YPA_3882 4372095 - 4372415 + | putative fructose-like phosphotransferase EIIB subunit 2 YPA_3883 4372508 - 4372852 + | putative fructose-like phosphotransferase EIIB subunit 3 YPA_3884 4373720 - 4372845 - | putative transcriptional regulator TERM 4805 4373673 - 4373692 + g 77 -13.6 -2.55544 | opp_overlap 4373671 4373668, overlap 4373668 ATGGTGAATACTATT CGGCTCTG ATAC CAGAGCCG TCAGTTGACTGATAA YPA_3885 4374258 - 4373722 - | hypothetical protein YPA_3886 4374964 - 4376160 + | hypothetical protein YPA_3887 4376171 - 4377217 + | M48 peptidase family protein YPA_3888 4378517 - 4377363 - | hypothetical protein YPA_3889 4379926 - 4378514 - | hypothetical protein TERM 4806 4380372 - 4380354 - H 70 -8 -3.64487 | TGACACTGGTAAGAA CCACCCGC ACG GCGGAAGG AACTGCCCACGCAGG TERM 4807 4380451 - 4380461 + H 71 -6.8 -4.12188 | opp_overlap 4380450, overlap 4380435 CCGCCGGAAAACAGG CGAG ATT CTCG TTTTCAGAGTAGTAA YPA_3890 4380543 - 4380830 + | hypothetical protein YPA_3891 4382547 - 4381174 - | hypothetical protein YPA_3892 4383241 - 4382519 - | hypothetical protein TERM 4808 4383063 - 4383078 + gr 74 -7.6 -4.04188 | opp_overlap 4383060 TCTACCGACATACCG TTTCCG TAAT CGGAAA TTATTATCTTTAACT YPA_3893 4384616 - 4383291 - | modification methylase TERM 4809 4383332 - 4383342 + g 73 -5.4 -4.73388 | overlap 4383328 CTTTATCCATCGTAT TAGC AAT GCTA TTTTTCATCGCCATT TERM 4810 4384508 - 4384519 + g 70 -4.4 -4.7254 | ATTGAATCAAAGCAT GACA GTAT TGTC TTTTTGCTCGCCCCT YPA_3894 4385096 - 4384629 - | hypothetical protein YPA_3895 4385573 - 4385343 - | hypothetical protein TERM 4811 4385427 - 4385412 - G 100 -6.8 -5.81412 | opp_overlap 4385412 TTTAGGCAAAAAAAA GCCACC TTGC GGTGAC TTAATTTTCATACTA YPA_3896 4386956 - 4385640 - | hypothetical protein YPA_3897 4389016 - 4386953 - | hypothetical protein TERM 4812 4387147 - 4387158 + g 79 -7.2 -4.58466 | ACACGAACTGTAGCT GCGG GTTT CCGC TTTTCTGATTGTCGC TERM 4813 4388936 - 4388949 + g 70 -9.5 -3.25762 | overlap 4388934 CTGACGATAGTGTTT GCCCC AGTC GGGGC TGTATTGATTATTTT TERM 4814 4389128 - 4389146 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_3898 4389150 - 4390172 + | transposase for insertion sequence IS100 TERM 4815 4390253 - 4390239 - g 77 -11.4 -3.3506 | overlap 4390230 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_3899 4390172 - 4390951 + | transposase/IS protein YPA_3900 4391106 - 4391002 - | hypothetical protein YPA_3901 4391291 - 4391602 + | putative lipoprotein YPA_3902 4393317 - 4391674 - | isovaleryl CoA dehydrogenase TERM 4816 4393478 - 4393457 - R 71 -3 -5.08088 | opp_overlap 4393458, overlap 4393458 AATTCCCAACAAAAA GCCAACAT ACAAAG ATGTTGGT TTGAGGTTATTGACA TERM 4817 4393557 - 4393583 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4393546, overlap 4393552 4393558 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4818 4393558 - 4393584 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4393546, overlap 4393552 4393557 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4819 4393647 - 4393668 + r 75 -8.8 -3.60098 | TTGTCAGCAGTCTGA GCCAACAT ACAAAG ATGTTGGC TTTAGGCTGCGGAGT YPA_3903 4394465 - 4393725 - | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 4820 4394550 - 4394526 - R 74 -10 -3.08072 | gap 1 AATAATTAAATTATA TG-CGGGCGAC AAAA GCCGCCCGGCA AGTAGCACACCACCA YPA_3904 4397118 - 4394584 - | exoribonuclease R TERM 4821 4394773 - 4394787 + g 91 -9.2 -4.82901 | GTTTACCGGTTTTTT CGCCCG ACG TGGGCG TTTTTGTCCACCCGC TERM 4822 4395715 - 4395704 - G 76 -7.2 -4.36914 | opp_overlap 4395703 TGTTTTTCCACAAAA CGCG CCGC CGCG ATATTCGCCAGAATC TERM 4823 4397389 - 4397358 - R 84 -5.1 -5.30155 | overlap 4397362 TTATTAAGTAAAAAA CCTACTCAACAAG TAATAG CTTGTAGAGCGGG GAATTATCTTTAACC YPA_3905 4397784 - 4397359 - | transcriptional repressor NsrR TERM 4824 4398066 - 4398037 - R 100 -15.9 -2.80816 | opp_overlap 4398037 4398040 4398044, overlap 4398040 4398044 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4825 4398037 - 4398066 + r 100 -13.7 -3.53224 | opp_overlap 4398037 4398040 4398044, overlap 4398040 4398044 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4826 4398040 - 4398063 + r 81 -9.6 -3.90744 | opp_overlap 4398037 4398040 4398044, overlap 4398037 4398044 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4827 4398063 - 4398040 - R 91 -11.8 -3.55447 | opp_overlap 4398040 4398037 4398044, overlap 4398037 4398044 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4828 4398044 - 4398059 + r 73 -6 -4.56978 | opp_overlap 4398044 4398040 4398037, overlap 4398040 4398037 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC TERM 4829 4398059 - 4398044 - R 87 -8.2 -4.41114 | opp_overlap 4398040 4398037 4398044, overlap 4398040 4398037 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC YPA_3906 4399451 - 4398153 - | adenylosuccinate synthetase TERM 4830 4398939 - 4398962 + g 80 -10.4 -3.67976 | opp_overlap 4398932, overlap 4398933 4398943 GTAATGCACCAACTG GAAGTTGTGG TATT CCACAATTTC TTTCAGCTTGATAGC TERM 4831 4398943 - 4398958 + g 79 -7.6 -4.46233 | opp_overlap 4398932, overlap 4398933 4398939 TGCACCAACTGGAAG TTGTGG TATT CCACAA TTTCTTTCAGCTTGA TERM 4832 4399081 - 4399091 + g 76 -6.8 -4.57341 | GTACCGATAGCTTTT GCAC CAC GTGC TTTTTCACGCGCATT YPA_3907 4399751 - 4399551 - | hypothetical protein TERM 4833 4399809 - 4399791 - R 95 -9.5 -4.43213 | TTCAACACATGAAAA GGCCCGC ACTAG ACGGGCC TCGGTGTTACGTTCA YPA_3908 4400927 - 4399923 - | FtsH protease regulator HflC YPA_3909 4402190 - 4400931 - | FtsH protease regulator HflK TERM 4834 4402021 - 4402034 + g 74 -2.3 -5.19261 | CCGCTACCTTTGCCA CCGAG GCTA CTCAG TTTTTTGCTCAGTTT YPA_3910 4403717 - 4402431 - | putative GTPase HflX hfq 4404121 - 4403816 - | RNA-binding protein Hfq miaA 4405178 - 4404237 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 4835 4404677 - 4404659 - G 100 -3.9 -6.23545 | gap 1, opp_overlap 4404666 4404667, overlap 4404661 CTGAAATAAAAAAAA CT-TCCAG TGCT CTGGAGAG CCTTTGGGGATCATT mutL 4407078 - 4405171 - | DNA mismatch repair protein YPA_3914 4409007 - 4407094 - | putative N-acetylmuramoyl-L-alanine amidase-family protein TERM 4836 4407291 - 4407305 + g 71 -11.4 -2.72511 | overlap 4407290 CTGCCGTTACCGTAC TGCCCG ACG CGGGCA CTTTCAACCGCTGGC TERM 4837 4408538 - 4408562 + g 73 -2.8 -5.04601 | gap 1 ACCGTGTAGTTATTG CCCG-ACTGTT GGGT GACAGCACGGG TTTTTACTTTCTGCG TERM 4838 4408587 - 4408601 + g 71 -5.7 -4.36433 | TCTGCGTCAGTTCCA GTACC AGGCG GGTAC TTTGTTCATCTTTCG YPA_3915 4409485 - 4409015 - | putative ATPase YPA_3916 4411010 - 4409496 - | hypothetical protein TERM 4839 4409954 - 4409966 + gH 80 -9.1 -3.97602 | TAAGTGCATCCGCAT CCCAC AAG GTGGG TTTATCACTCTGTTG TERM 4840 4411085 - 4411103 + Gr 71 -8.2 -3.53012 | opp_overlap 4411084 TAGGTTTCCAGCAAG TCGGTATT TGC GATACCGA TTTGACGGCGGAAGA TERM 4841 4411181 - 4411163 - gR 82 -10.3 -3.59087 | AATATCATGGCGAAA TGGCGTG GATGG CACGCCA CGGTATGCTGCGTGC TERM 4842 4411307 - 4411290 - gR 75 -8.5 -3.86202 | opp_overlap 4411293, overlap 4411293 TGCCAGTACATTAAA TAACCCA GAAT TGGGTTA TGTCAGCCGCTATGC YPA_3917 4411009 - 4412244 + | putative iron-sulfur cluster-binding protein TERM 4843 4412329 - 4412310 - TR 84 -2.9 -5.69262 | gap 1 GCATAAAAATAAAAA TGC-CTTG GCAAT CAAGTGCA AAAAAAAGCACAAGT TERM 4844 4412589 - 4412605 + Tr 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4845 4412637 - 4412667 + Tr 89 -7 -5.40464 | overlap 4412638 CTATTCCCGCGTCGC CTGTATAAATACCC ATT GGTTATTTATACAC TTTTTATTTCTGATG TERM 4846 4412638 - 4412666 + Tr 86 -10.5 -3.82652 | overlap 4412637 TATTCCCGCGTCGCC TGTATAAATACCC ATT GGTTATTTATACA CTTTTTATTTCTGAT TERM 4847 4412756 - 4412772 + Tr 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4848 4412832 - 4412847 + Tr 70 -7.6 -3.73647 | TGTACTAAATCTGTC TTCGCA TGCT TGCGAA TTCTTCATCGGTACG TERM 4849 4413389 - 4413372 - TR 77 -6.3 -4.71776 | TAAGATTGAATAAAA TGCTCAC GATA GTAAGCA AGCTCGGCGACTGAC YPA_3918 4414039 - 4413356 - | oligoribonuclease YPA_3919 4414101 - 4415153 + | ribosome-associated GTPase TERM 4850 4415415 - 4415443 + F 70 -5.8 -4.38141 | overlap 4415417 GAAGGGTCTGACAGG GTGGGCGCAGAG CGATA CAATGCGCCCCC TTATTTTATCTAACG YPA_3920 4415478 - 4416359 + | phosphatidylserine decarboxylase TERM 4851 4417070 - 4417060 - g 76 -4.6 -5.04175 | overlap 4417061 CGAATTATACAAAAA GCGC GAA GCAC GGGTTCAGGCTCAGC TERM 4852 4418207 - 4418217 + G 70 -4.6 -4.65838 | opp_overlap 4418202, overlap 4418202 CCAACACAAGTTGCG CGCG CAA TGCG TTTTTACCGTCTGTC TERM 4853 4418659 - 4418632 - g 71 -11.3 -2.71364 | gap 1, opp_overlap 4418630 TGATCGCGCCAAGCA GCGCCGCGCCGA TATTC TC-GCGCAGCGC GCCCGTGGTGAGGAA YPA_3921 4416401 - 4419742 + | hypothetical protein TERM 4854 4419787 - 4419766 - T 91 -6.5 -5.48514 | opp_overlap 4419766 4419768, overlap 4419768 AGTAAGAAATAAAAA TGCCCTGCG CCTT CACAGGTCA GGGTATTTGTTTTTG TERM 4855 4419766 - 4419792 + T 82 -5.9 -4.97405 | gap 1, opp_overlap 4419766 4419768, overlap 4419768 AGTAAGAAATAAAAA TGCCCTGCGCCT TCAC AGGT-CAGGGTA TTTGTTTTTGTAAGT YPA_3922 4420840 - 4419863 - | lysyl-tRNA synthetase YPA_3923 4421298 - 4423121 + | fumarate reductase flavoprotein subunit YPA_3924 4423114 - 4423848 + | fumarate reductase iron-sulfur subunit TERM 4856 4423924 - 4423935 + G 74 -2.2 -5.10064 | overlap 4423904 4423911 CTGGTGGCAACAGCT TGGT TTCT ACCG TTTTTATATGTTGCG YPA_3925 4423865 - 4424257 + | fumarate reductase subunit C YPA_3926 4424274 - 4424630 + | fumarate reductase subunit D TERM 4857 4424656 - 4424678 + T 100 -13.4 -4.0825 | CACATGCCATATTCG CGGCCTGCTG TTC TGGCAGGCCG TTCTTTGGTTAAAGC YPA_3927 4425256 - 4424795 - | putative chaperone TERM 4858 4424997 - 4424983 - G 80 -4.2 -5.09762 | AGGCCAATAGAAAAA CACTGG CAG CCATTG CGACGAGGGTAATAA YPA_3928 4425922 - 4425356 - | elongation factor P TERM 4859 4425814 - 4425829 + g 76 -8.2 -4.1466 | opp_overlap 4425804 4425813 4425814 TAACACGCGCAAAAG CCTGGC CTTT GCCGGG TTTTACGAATTCGCT YPA_3929 4425958 - 4426986 + | hypothetical protein YPA_3930 4427669 - 4427271 - | putative lipoprotein TERM 4860 4428216 - 4428185 - R 100 -16.8 -4.38154 | opp_overlap 4428190 4428210, overlap 4428190 ACAGTCTTCACAAAA TAAAAGCGAGCAGG TCAC CCTACTCGCTTTTA TCAACAGCTTTACCT TERM 4861 4428190 - 4428211 + r 93 -10.1 -4.37658 | opp_overlap 4428185 4428190, overlap 4428210 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT TERM 4862 4428211 - 4428190 - R 100 -12.3 -5.18371 | opp_overlap 4428190 4428210, overlap 4428185 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT groEL 4429930 - 4428293 - | chaperonin GroEL TERM 4863 4429299 - 4429309 + g 71 -6.8 -4.25056 | opp_overlap 4429298 TCAAGTTCAATAGAG CCAG TTT CTGG TTTATTGATGAAGTA groES 4430270 - 4429977 - | co-chaperonin GroES fxsA 4431103 - 4430525 - | FxsA aspA 4431551 - 4432987 + | aspartate ammonia-lyase TERM 4864 4433012 - 4433040 + F 100 -10.4 -5.04601 | gap 2, opp_overlap 4433016 TCGGTAGCCCTCTAA GGCACGCATGCTCC TCT GGA-CA-GCGTGCC TTTTTACTTTCTGGC YPA_3935 4433107 - 4434408 + | anaerobic C4-dicarboxylate transporter TERM 4865 4434412 - 4434443 + F 77 -10.2 -3.18511 | gap 1, overlap 4434417 CTGGTTCTGTAATCT GTCTGATGGGGCGCA TCA TGCGCCCCAATA-AC TTCGGTCTATCTCTC TERM 4866 4434417 - 4434439 + F 91 -13.4 -2.56571 | overlap 4434412 TCTGTAATCTGTCTG ATGGGGCGCA TCA TGCGCCCCAA TAACTTCGGTCTATC TERM 4867 4434487 - 4434500 + F 71 -9.5 -2.91126 | overlap 4434483 TCATCTTCTGACTGG CCCCG GCTT CGGGG TATAGTATGATTTGT TERM 4868 4434814 - 4434779 - g 73 -9.2 -3.75629 | gap 1 TACTGGGAAGGTAAA CTCGAACAAGAGTATGA GGT TCAG-CTCTTGTTCAAG AGCAATACTGACCAT YPA_3936 4434593 - 4434952 + | divalent-cation tolerance protein CutA dipZ 4434928 - 4436715 + | thiol:disulfide interchange protein precursor TERM 4869 4436759 - 4436717 - T 100 -8.3 -4.77173 | overlap 4436719 CGGTTACAAAATAAA TAGCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATCAA CGCTCAATCACGACA TERM 4870 4436757 - 4436719 - T 90 -10.9 -3.99938 | overlap 4436717 GTTACAAAATAAATA GCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATC AACGCTCAATCACGA YPA_3938 4438924 - 4436777 - | formate dehydrogenase H YPA_3939 4439504 - 4438947 - | 4Fe-4S ferrodoxin YPA_3940 4441542 - 4439527 - | putative oxidoreductase Fe-S binding subunit TERM 4871 4440953 - 4440965 + g 76 -5.5 -4.87803 | AGGTTAACCGGTGTT GCGTC GCG GATGC TTTTATTTGACGATG TERM 4872 4441035 - 4441051 + g 83 -9.4 -4.35461 | overlap 4441020 CATTGTGCTCATTCA GCGCCA TGTGT TGGCGC TTTTGCTGCTGTTGA TERM 4873 4441101 - 4441115 + g 71 -7.1 -4.25104 | CCACCAAGGTCAGAG CCTGC GTAGG GCAGG TTTTAATACAGGCAG TERM 4874 4441414 - 4441432 + g 77 -11.8 -3.14126 | opp_overlap 4441413, overlap 4441405 ATCGCCTTTGAATAC TTTCACCC GTG GGGTGAAA TATTCCGGTTTATCA TERM 4875 4441869 - 4441859 - H 71 -8.2 -3.42621 | opp_overlap 4441865 AACGTCAACCGACAA CGGG GTG CCCG TAAAGATAGGGCTAT YPA_3941 4441962 - 4442537 + | putative transcriptional regulator TERM 4876 4442724 - 4442708 - T 76 -10.9 -2.62616 | opp_overlap 4442707 4442706 4442703 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 4877 4442769 - 4442788 + T 100 -11.4 -4.84527 | opp_overlap 4442769 4442768 ACCATTATTTATAAG GCCTCGCT GCAA AGCGGGGC TTTTTCGTATCTGGA YPA_3942 4445746 - 4443191 - | enhancing factor TERM 4878 4443730 - 4443751 + g 70 -2.9 -4.89567 | overlap 4443732 4443732 ACATTATAGGGTGAC TACGCAGCA TTTC TGCTGCCGA TTTTATATTTTCCAA YPA_3943 4445943 - 4445776 - | hypothetical protein YPA_3944 4446173 - 4446598 + | hypothetical protein TERM 4879 4446634 - 4446649 + T 89 -7.5 -5.05116 | opp_overlap 4446588 4446634 TTTAATGTCAACGAA CCCGC CAATGT GCGGG TTTTGTTATTTCTAA YPA_3945 4446963 - 4446661 - | putative transposase YPA_3946 4447300 - 4447034 - | hypothetical protein YPA_3947 4447454 - 4448485 + | rhamnose-proton symporter TERM 4880 4448551 - 4448581 + GT 86 -11.3 -3.25896 | gap 1, opp_overlap 4448550, overlap 4448554 TAAAGATGATGATAT TGACGGGCAGCGTT GAAA AAC-CTGCCCGTTA TCTTATGGCTAATCG TERM 4881 4448554 - 4448578 + GT 88 -10.8 -3.76568 | gap 1, opp_overlap 4448550, overlap 4448551 AGATGATGATATTGA CGGGCAGCGTT GAAA AAC-CTGCCCG TTATCTTATGGCTAA YPA_3948 4448460 - 4448609 + | hypothetical protein YPA_3949 4449506 - 4448634 - | transcriptional activator RhaR YPA_3950 4450460 - 4449639 - | transcriptional activator RhaS TERM 4882 4450481 - 4450500 + GH 72 -9.2 -3.10164 | GCCCTCTTTCGACAG GCACGGCG AAAT CGCCCTGC TTCAGTCCTCGATAG YPA_3951 4450446 - 4450586 + | hypothetical protein rhaB 4450887 - 4452344 + | rhamnulokinase YPA_3953 4452341 - 4453597 + | L-rhamnose isomerase TERM 4883 4454088 - 4454075 - g 72 -3.8 -4.88067 | AGTTATGTACAAAAA CTGG AGAACG CCAG CTTCACGCGCCTGTT YPA_3954 4453610 - 4454434 + | rhamnulose-1-phosphate aldolase YPA_3955 4454501 - 4455148 + | alcohol dehydrogenase YPA_3956 4455978 - 4455199 - | transposase/IS protein TERM 4884 4455897 - 4455911 + g 77 -11.4 -3.3506 | overlap 4455910 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_3957 4457000 - 4455978 - | transposase for insertion sequence IS100 TERM 4885 4457022 - 4457004 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_3958 4457057 - 4457641 + | alcohol dehydrogenase YPA_3959 4457655 - 4457969 + | hypothetical protein TERM 4886 4458127 - 4458108 - T 100 -15 -3.52073 | opp_overlap 4458106 4458120 TCCTGAATACTAGAA CCGCGCCA TCCG TGGCGCGG CCGTTTAAAGCTAAT YPA_3960 4458764 - 4458216 - | single-strand DNA-binding protein uvrA 4459221 - 4462064 + | excinuclease ABC subunit A TERM 4887 4462103 - 4462069 - T 74 -9.4 -3.35088 | gap 1, overlap 4462072 AAACCGTTTAATGAA CCACTCTGGGGCAAT CAATGT ATTGCTCCAGAG-GG TATGACATTCAGCGT TERM 4888 4462101 - 4462072 - T 77 -10.8 -2.84098 | overlap 4462069 CCGTTTAATGAACCA CTCTGGGGCAAT CAATGT ATTGCTCCAGAG GGTATGACATTCAGC YPA_3962 4462516 - 4462157 - | hypothetical protein YPA_3963 4464236 - 4463043 - | aromatic amino acid aminotransferase alr 4465501 - 4464422 - | alanine racemase TERM 4889 4464718 - 4464708 - G 70 -8.2 -3.727 | GCGATCACACCTAAA CGCG TAT CGCG CTCACTGACCCAGGT TERM 4890 4464875 - 4464895 + g 70 -9.7 -3.28712 | opp_overlap 4464888 CAGCACAATCCCTGG GCGCACC CAATCAC GGTGCGC TTGTGGCCACCGCAG YPA_3965 4467004 - 4465598 - | replicative DNA helicase TERM 4891 4468126 - 4468104 - g 70 -2.6 -4.99134 | overlap 4468105 ATTCTAAACCAAAAA GGGGGGAT CTATGTC ACCCGCCC TTCACTGAATGTCTA YPA_3966 4467336 - 4468319 + | quinone oxidoreductase, NADPH-dependent TERM 4892 4468385 - 4468358 - T 100 -14.9 -4.69664 | opp_overlap 4468351 4468350 4468358 4468360 4468362 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4893 4468358 - 4468385 + T 89 -12.7 -2.78395 | opp_overlap 4468358, overlap 4468351 4468350 4468360 4468362 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4894 4468360 - 4468383 + T 71 -9.5 -2.9296 | opp_overlap 4468358, overlap 4468358 4468351 4468350 4468362 CATGATTGAAAAACA GAGGGCCCC GATTAA GGAGCCCTC TGTCATTACACTTTC TERM 4895 4468461 - 4468477 + T 71 -3 -5.03994 | gap 1, opp_overlap 4468455, overlap 4468462 TCACGTAAATGAACG T-GCCGT TTAT ACGGCTA TTTTTATCTCTAACA TERM 4896 4468462 - 4468475 + T 76 -8.1 -4.14422 | opp_overlap 4468455, overlap 4468461 CACGTAAATGAACGT GCCGT TTAT ACGGC TATTTTTATCTCTAA pspG 4468882 - 4468664 - | phage shock protein G TERM 4897 4469288 - 4469255 - R 100 -15.5 -3.13908 | overlap 4469283 AAGTGAATGAGTGAA CCCCGAATCACTTAC GCCA GTAAATAATTCGGGG GCCCAATTTGCCGAA YPA_3968 4470435 - 4469398 - | tRNA-dihydrouridine synthase A TERM 4898 4470747 - 4470713 - g 95 -12.2 -4.36411 | TATCAATCAGGAAAA GCTGCTCGCACAAGCT GAA AGCCTGTGCCAACAAC GAAACGTCCGGCTGA YPA_3969 4470690 - 4471199 + | zinc uptake transcriptional repressor TERM 4899 4471388 - 4471360 - T 78 -9 -3.88015 | gap 1, opp_overlap 4471364, overlap 4471362 4471364 TAGAGAATCATGAAA TAGAGCCGTACCT CAAC AGGCACGGCT-TA TTATTCTGGGAGGAA TERM 4900 4471387 - 4471362 - T 78 -9.7 -3.51793 | opp_overlap 4471364, overlap 4471360 4471364 GAGAATCATGAAATA GAGCCGTACCT CAAC AGGCACGGCTT ATTATTCTGGGAGGA TERM 4901 4471364 - 4471385 + T 86 -10.1 -4.02817 | opp_overlap 4471364 4471362 4471360 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG TERM 4902 4471385 - 4471364 - T 95 -12.3 -3.32233 | opp_overlap 4471364, overlap 4471362 4471360 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG YPA_3970 4472023 - 4471415 - | LexA repressor YPA_3971 4472519 - 4472148 - | diacylglycerol kinase TERM 4903 4472368 - 4472351 - G 70 -3.3 -4.84642 | TGCAAATTAATAAAA TGCGCGC TATG GCACCCA CATCCAACCAGAAGG TERM 4904 4472605 - 4472595 - H 71 -6.8 -4.18401 | opp_overlap 4472595 CCACAGATCTCAAAA CCAG TTT CTGG TATCCTTGCGACGAA TERM 4905 4472726 - 4472711 - g 76 -6.8 -4.57341 | AATTGTTGGTAAAAA GCAAGG TTAT CCCTGC AGATCCGGTCTCTGA TERM 4906 4473124 - 4473140 + G 70 -3 -4.83169 | gap 1, overlap 4473123 GTATTGTGGTTGGGG CGCGACA GTTT TGT-GCG TTTTTCTACCACCGT YPA_3972 4472647 - 4475124 + | glycerol-3-phosphate acyltransferase TERM 4907 4475171 - 4475151 - T 93 -12.5 -3.0644 | opp_overlap 4475152, overlap 4475142 ACTCAATGCTTAACA GCCCCCTGC CTA GCAGGGGGT TTTCTGAATACCATA TERM 4908 4475152 - 4475170 + T 100 -16 -4.42653 | opp_overlap 4475142 4475151 CTCAATGCTTAACAG CCCCCTGC CTA GCAGGGGG TTTTCTGAATACCAT TERM 4909 4475191 - 4475213 + T 100 -10.6 -5.09426 | opp_overlap 4475182 4475191 TGAATACCATAACAA TGGCCGGA CTCATTA TCCGGCCA TTTTTTACCATTACC TERM 4910 4475213 - 4475191 - T 95 -11.3 -3.89291 | opp_overlap 4475191, overlap 4475182 TGAATACCATAACAA TGGCCGGAC TCATT ATCCGGCCA TTTTTTACCATTACC ubiA 4476171 - 4475305 - | 4-hydroxybenzoate octaprenyltransferase ubiC 4476861 - 4476337 - | chorismate pyruvate lyase TERM 4911 4476929 - 4476917 - H 72 -7.7 -3.87925 | AATTAGTAAACAGAA CGCTA TTG TAGCG CAGAATAGGTACCCG TERM 4912 4477443 - 4477431 - H 70 -2.7 -5.01823 | ACAATAACAAGAAAA TTCCT ACA AAGAA TTAGCCGGGTCTTAT TERM 4913 4477941 - 4477905 - g 76 -8 -4.21933 | overlap 4477907 CGAAGGTGAAAATAA CACCGCGATATCCCTG TTCGG CACGGATATCGCCGTT GAGACCCGGCCAGGT TERM 4914 4477939 - 4477907 - g 80 -10.6 -3.70108 | overlap 4477905 AAGGTGAAAATAACA CCGCGATATCCCTG TTCGG CACGGATATCGCCG TTGAGACCCGGCCAG TERM 4915 4480278 - 4480258 - g 70 -11.1 -2.50816 | overlap 4480257 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YPA_3975 4477693 - 4481502 + | hypothetical protein TERM 4916 4481730 - 4481756 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 4481719, overlap 4481725 4481731 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4917 4481731 - 4481757 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 4481719, overlap 4481725 4481730 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4918 4481817 - 4481838 + T 74 -10.1 -3.14878 | overlap 4481816 4481820 GGTTTGTCAGCAGTC TGAGGTGCC TCTC GGCACCTCC TGTTGGATTAACGAC TERM 4919 4481820 - 4481835 + T 75 -10.4 -2.77791 | overlap 4481817 4481816 TTGTCAGCAGTCTGA GGTGCC TCTC GGCACC TCCTGTTGGATTAAC YPA_3976 4483903 - 4481846 - | putative oxidoreductase TERM 4920 4484900 - 4484910 + r 75 -3.2 -5.1471 | overlap 4484846 TAAAATAGCAAGCCA TCTC TTT GGGA TTTATTTTTTCTCGT YPA_3977 4486231 - 4484912 - | hypothetical protein TERM 4921 4485081 - 4485064 - G 70 -8.3 -3.79138 | opp_overlap 4485076, overlap 4485055 4485053 AATACACGCAGCAAA CCCCCTG CTGC CCGGGGG TGAACCCCAGTAAAT TERM 4922 4485754 - 4485738 - G 71 -7.2 -4.07568 | opp_overlap 4485738 TGCCCCGGTGTAAAA CCCCGC AAGTA GCGAGG TGTATGGGTTACCGC TERM 4923 4486052 - 4486072 + g 72 -8.3 -3.88291 | opp_overlap 4486052 TGGGCAATGCGTAAA CGTAATCAG CCC CGGATTACG TTTATCCAGCTCGTC YPA_3978 4487678 - 4487424 - | hypothetical protein YPA_3979 4488432 - 4487689 - | putative periplasmic chaperone protein YPA_3980 4490882 - 4488504 - | putative outer membrane fimbrial usher protein TERM 4924 4490548 - 4490536 - G 70 -10.5 -3.02013 | opp_overlap 4490535 AGTTTAACAACCATA CCCGG CCA CCGGG CTTCCATATTCTCAC YPA_3981 4491771 - 4491133 - | hypothetical protein TERM 4925 4492462 - 4492444 - R 100 -12.4 -5.81412 | opp_overlap 4492444 TTGAGCGAAAAAAAA CCCTGCCG ATG CAGCAGGG TTTAATTGAAACGGG TERM 4926 4492444 - 4492462 + r 86 -10.2 -3.90112 | opp_overlap 4492444 TTGAGCGAAAAAAAA CCCTGCCG ATG CAGCAGGG TTTAATTGAAACGGG YPA_3982 4493059 - 4492484 - | tellurium resistance protein TERM 4927 4493112 - 4493088 - R 100 -12.3 -3.61268 | opp_overlap 4493079 4493090 CACTGAAGTGTTAAA TATTCAGAGCA TTT TGCCCTGAATA TATGAATACGTTAAT YPA_3983 4493821 - 4493243 - | tellurium resistance protein YPA_3984 4494922 - 4493885 - | tellurium resistance protein YPA_3985 4495399 - 4494944 - | tellurite resistance protein TERM 4928 4495149 - 4495159 + g 71 -6.8 -4.1552 | GCATCAAATTCATAG CTGG TAA CCAG TTTGTTAAAGAACTC TERM 4929 4495220 - 4495235 + g 83 -3.3 -5.42605 | TTCAGGCGACTGCTT GATGA ACATGA TCATC TTTTGTTTTTCTTCC YPA_3986 4496616 - 4495432 - | putative tellurite resistance protein TERM 4930 4495493 - 4495507 + g 72 -10 -3.45634 | TCCATTTCTTTGTGT CCGCTA AAA TAGCGG TTAATTCGTTCAACT TERM 4931 4496459 - 4496441 - G 71 -7.4 -4.03234 | CCCTGCCCAGACAAA CGGATGGT GCT ATCATCCG TAACCGGTTGACCAT TERM 4932 4496600 - 4496588 - G 71 -10.5 -3.12327 | overlap 4496586 GTCTGAGACGCAACA GGGGC ATT GCCCC CAGGCATCAGATTCA YPA_3987 4497209 - 4496616 - | tellurium resistance protein TERM 4933 4497687 - 4497672 - g 71 -6.1 -4.3467 | opp_overlap 4497664 4497672 ATCTTGACACCAAAA TGGCG TTTATC CGCCA TATCGTGAAAGCATT TERM 4934 4497921 - 4497936 + G 71 -6 -4.30576 | ATGAATTGCGTGAAT GGCTGG CTAA CCCGCC TTTTGATACTGAAAA YPA_3988 4497485 - 4498546 + | hypothetical protein TERM 4935 4498963 - 4498947 - g 76 -4.3 -4.94058 | CGAATTCAAAGAAAA CCATAGC CAT GCAACGG ATCACCTGCTCTATT YPA_3989 4498558 - 4499694 + | hypothetical protein TERM 4936 4500212 - 4500223 + G 70 -4.4 -4.66938 | CTGGAATCCCTCTTT TCCA CTGA TGGA TTTTATATTCACCGT YPA_3990 4499687 - 4500499 + | hypothetical protein TERM 4937 4500784 - 4500803 + G 73 -12.2 -2.57944 | overlap 4500783 TCGTGCTCGCCAGCT TGGTACGC GCGG GCGTACCA CTTGGTGTGATGCTC YPA_3991 4500492 - 4501571 + | hypothetical protein YPA_3992 4501571 - 4502530 + | putative ATP/GTP-binding protein YPA_3993 4502927 - 4503415 + | hypothetical protein TERM 4938 4504300 - 4504313 + G 74 -2.3 -5.09521 | opp_overlap 4504301, overlap 4504301 TTTACGCCATCCATA ATGCC ACTT GGCAA TTTTTCATTTATTGA YPA_3994 4503730 - 4504530 + | putative methylenetetrahydrofolate reductase TERM 4939 4504642 - 4504661 + F 70 -3.5 -4.78981 | opp_overlap 4504624, overlap 4504626 4504643 CCTCACTCTGATGGG TGGGGCT ATATCA ACCCCCA TTTCTTTTGCTTGAT YPA_3995 4504871 - 4506184 + | coproporphyrinogen III oxidase TERM 4940 4506535 - 4506525 - g 71 -5.4 -4.52047 | overlap 4506527 TATCAGAGCACAAAA TTGC CAG GCAA TCGCCCTGCTGGAAC YPA_3996 4506181 - 4506726 + | hypothetical protein YPA_3997 4506760 - 4507410 + | hypothetical protein YPA_3998 4507579 - 4507695 + | hemin uptake protein HEMP YPA_3999 4507825 - 4509855 + | hemin receptor precursor TERM 4941 4509888 - 4509916 + F 82 -10.3 -3.60419 | opp_overlap 4509884 GTCTGAAATCATTCA TCCGGTAATCCAT TTT GTGGCTTGCCGGA TTATCATTTGACAAT YPA_4000 4509974 - 4511011 + | hemin transport protein TERM 4942 4511179 - 4511212 + G 78 -13.2 -2.68823 | opp_overlap 4511179 4511181, overlap 4511182 4511184 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGCACGC TERM 4943 4511212 - 4511179 - g 74 -11 -3.11192 | opp_overlap 4511179 4511182 4511184, overlap 4511181 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGCACGC TERM 4944 4511182 - 4511209 + G 77 -11.3 -3.49618 | opp_overlap 4511181 4511179, overlap 4511179 4511184 AGCACCAGTCAACAG CCTCAGGCAGC GCAAAA GCTGCCTGATG TTGGTTATATGCGCA TERM 4945 4511184 - 4511207 + G 81 -12.5 -3.32023 | opp_overlap 4511181 4511179, overlap 4511182 4511179 CACCAGTCAACAGCC TCAGGCAGC GCAAAA GCTGCCTGA TGTTGGTTATATGCG YPA_4001 4511008 - 4511847 + | hemin-binding periplasmic protein YPA_4002 4511844 - 4512848 + | hemin transport system permease protein HmuU TERM 4946 4513249 - 4513261 + G 83 -9.1 -4.4009 | CTGGCACTGGCACAG CGCGA CTA TCGCG TTTTATCCGGTGGCG YPA_4003 4512841 - 4513641 + | hemin importer ATP-binding subunit TERM 4947 4513681 - 4513669 - T 77 -4.7 -5.0538 | CGCTATGCTAAAAAA CAGCC TAT GGCGG TTCCAAAGCACCAAC YPA_4004 4514963 - 4513782 - | cystathionine beta-lyase YPA_4005 4516295 - 4515009 - | putative transmembrane transport protein TERM 4948 4516671 - 4516700 + G 74 -10.1 -3.63839 | gap 1, opp_overlap 4516641 4516671 4516670 4516668 4516667 ATTAAAAAGAACCAC TCG-CAGCATCGTT TTA ACCGATGCTGGCGA TTACTTGTTTCATCA YPA_4006 4516465 - 4517448 + | LysR family transcriptional regulator YPA_4007 4517795 - 4517526 - | hypothetical protein YPA_4008 4519006 - 4517792 - | putative inner membrane protein TERM 4949 4518436 - 4518469 + g 70 -2.3 -5.05228 | overlap 4518437 GGCGTGCCGCTCTGG CTGGGTGCTGCGTCA GTGG TGAGGCGGCAGTCAC TTTTTGTAGTTTAAT TERM 4950 4519100 - 4519078 - R 72 -7.8 -3.77489 | opp_overlap 4519081, overlap 4519079 4519081 AAGGTAACAGGGAAA GTAGGCTTAT ATA ATAAGCCTAT TGAGGTTATTGACAA TERM 4951 4519099 - 4519079 - R 81 -11.3 -2.8577 | opp_overlap 4519081, overlap 4519078 4519081 AGGTAACAGGGAAAG TAGGCTTAT ATA ATAAGCCTA TTGAGGTTATTGACA TERM 4952 4519097 - 4519081 - R 71 -9.5 -2.974 | opp_overlap 4519081, overlap 4519079 4519078 GTAACAGGGAAAGTA GGCTTAT ATA ATAAGCC TATTGAGGTTATTGA TERM 4953 4519081 - 4519097 + r 72 -9.5 -3.12749 | opp_overlap 4519081 4519079 4519078 GTAACAGGGAAAGTA GGCTTAT ATA ATAAGCC TATTGAGGTTATTGA TERM 4954 4519178 - 4519204 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4519167, overlap 4519173 4519179 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4955 4519179 - 4519205 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4519167, overlap 4519173 4519178 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4956 4519268 - 4519284 + r 76 -9.5 -3.40878 | overlap 4519266 TTGTCAGCAGTCTGA GGCTTAT ATA ATAAGCC TATTATTCACATAAT YPA_4009 4520456 - 4519389 - | secretion system apparatus protein SsaU YPA_4010 4521240 - 4520446 - | putative type III secretion apparatus protein TERM 4957 4520579 - 4520568 - G 91 -7.2 -5.1244 | opp_overlap 4520568 TCAGTAAGAGAAAAA GCGC CAGT GCGC TTTTAATGGGCATCG TERM 4958 4520568 - 4520579 + g 74 -7.2 -4.26076 | opp_overlap 4520568 TCAGTAAGAGAAAAA GCGC CAGT GCGC TTTTAATGGGCATCG YPA_4011 4521535 - 4521242 - | putative type III secretion apparatus protein YPA_4012 4522242 - 4521532 - | type III secretion system protein YPA_4013 4523271 - 4522309 - | type III secretion system protein YPA_4014 4523647 - 4523249 - | hypothetical protein TERM 4959 4523315 - 4523327 + g 86 -9.1 -4.54449 | TAACTGATGCAGTTG CCGCT GCC AGCGG TTTTGTATGCGCTGT YPA_4015 4524029 - 4523628 - | type III secretion system apparatus protein YPA_4016 4525372 - 4524026 - | type III secretion system ATPase YPA_4017 4527365 - 4525350 - | secretion system apparatus protein SsaV TERM 4960 4526465 - 4526446 - G 83 -3.4 -5.42514 | overlap 4526447 4526448 CGATAAAGTAAAAAA GCCGGAGC CGCA ACCGCGGC CGCCAAAGTGATAAA YPA_4018 4528038 - 4527391 - | putative type III secretion system apparatus protein YPA_4019 4528631 - 4528035 - | hypothetical protein YPA_4020 4529534 - 4528803 - | type III secretion system apparatus lipoprotein YPA_4021 4529782 - 4529531 - | putative type III secretion apparatus YPA_4022 4530128 - 4529880 - | putative type III secretion apparatus YPA_4023 4530343 - 4530125 - | putative type III secretion apparatus YPA_4024 4530970 - 4530350 - | AraC family transcriptional regulator TERM 4961 4530572 - 4530554 - G 71 -6 -4.386 | overlap 4530556 GAATTTCTCATAAAA CAGGAAAT TCA ATTTCCGG GTCGAAATACCCAAT YPA_4025 4531365 - 4531144 - | putative type III secretion apparatus YPA_4026 4532598 - 4531384 - | putative type-III secretion protein YPA_4027 4534117 - 4532600 - | type III secretion protein YPA_4028 4534343 - 4537162 + | two-component sensor/regulator YPA_4029 4537175 - 4537807 + | putative two-component response regulator TERM 4962 4537904 - 4537876 - T 100 -17.5 -5.38054 | opp_overlap 4537868 GGCGACAAATAAAAA CTCCCCGTCAGTA TGA TGCTGACGGGGAG TGGGTAGATACTATT gltP 4539301 - 4537985 - | glutamate/aspartate:proton symporter TERM 4963 4539892 - 4539876 - H 76 -6.7 -4.43909 | opp_overlap 4539876, overlap 4539873 ATGGTAATAAAACAA CATTTAT TTA ATAAATG TAAATTACTTTAGTC YPA_4031 4540156 - 4542114 + | acetyl-CoA synthetase TERM 4964 4542140 - 4542116 - f 76 -9.4 -3.5525 | gap 1, opp_overlap 4542116 4542117, overlap 4542117 AGACACCGTCGTAAA TTGTGCCGCCT ATAT AGGCGGCA-AA CTTAATTGATGCCTC TERM 4965 4542140 - 4542117 - f 76 -11 -2.72829 | opp_overlap 4542116 4542117, overlap 4542116 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC TERM 4966 4542117 - 4542140 + F 76 -11 -2.64199 | opp_overlap 4542116 4542117, overlap 4542116 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC YPA_4032 4542171 - 4542482 + | hypothetical protein actP 4542479 - 4544134 + | acetate permease TERM 4967 4544167 - 4544154 - T 85 -9.5 -4.1721 | opp_overlap 4544154 ATTTACAGGTTAAAA GGCCC CTAG GGGCC TAGATTGCTGACAAA YPA_4034 4545194 - 4544208 - | hypothetical protein TERM 4968 4545231 - 4545249 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_4035 4545253 - 4546275 + | transposase for insertion sequence IS100 TERM 4969 4546356 - 4546342 - g 77 -11.4 -3.3506 | overlap 4546333 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_4036 4546275 - 4547054 + | transposase/IS protein YPA_4037 4547382 - 4547098 - | multidrug ABC transporter ATPase TERM 4970 4547204 - 4547218 + gT 89 -2.1 -5.7946 | gap 1 TCAGAAGAGGCTTCT TGCGCC AGAC GG-GCA TTTTTTTGTTCCAGC YPA_4038 4547969 - 4547337 - | hypothetical protein TERM 4971 4548138 - 4548117 - R 90 -10.9 -4.05926 | GAATAAAGGCAGAAA CCGGTTTAC AGCC GCAAACCGG TAAATAAAGGACGTT YPA_4039 4548649 - 4548152 - | putative lipoprotein YPA_4040 4549965 - 4548664 - | hypothetical protein TERM 4972 4549607 - 4549639 + g 78 -10 -3.90766 | TGATGGATAGGCCCA TCGTCAGGTAGC GCCCAGTAA GCTATCTGACGA TTATGTTTATCAATG TERM 4973 4549744 - 4549731 - G 70 -3.1 -4.77036 | gap 1 CGTTATCACCAAAAA CGACGG CGG CC-TCG GTGGTATAACTGATG YPA_4041 4550585 - 4549962 - | hypothetical protein TERM 4974 4550702 - 4550722 + r 72 -6.3 -4.34263 | overlap 4550696 4550700 4550712 4550714 ATATCATCGTAAATT TGAGATTTA TCT TAAATCTTA TTTATGTTATTGAAA TERM 4975 4550769 - 4550753 - R 84 -2.9 -5.59879 | opp_overlap 4550753 TAGAAATATAAAAAA CCCGA CTGTTTT CCGGG TTTTTGTCAGGTAGT TERM 4976 4550909 - 4550939 + r 100 -15.4 -5.1523 | opp_overlap 4550888 4550909 TTATTTACCTCAAAA GCCCCGGAGCTG GGCTGGA CTGCTCCGGGGC TTTTTCTCTTCTGAC TERM 4977 4550939 - 4550909 - R 100 -15.4 -4.14739 | opp_overlap 4550909, overlap 4550888 TTATTTACCTCAAAA GCCCCGGAGCTG GGCTGGA CTGCTCCGGGGC TTTTTCTCTTCTGAC YPA_4042 4553686 - 4550960 - | putative cation-transporting P-type ATPase TERM 4978 4553546 - 4553563 + g 70 -3.3 -4.7629 | overlap 4553542 4553548 GGGACCATATTGCGC CAGGCGC TCTT GTGCCTC TTTTTGGCTTAATCC YPA_4043 4554256 - 4556175 + | lytic murein transglycosylase YPA_4044 4556411 - 4556803 + | Trp operon repressor YPA_4045 4557342 - 4556800 - | NTPase TERM 4979 4557367 - 4557397 + H 71 -4.8 -4.65512 | opp_overlap 4557366 4557367, overlap 4557362 GAATATCCTTTAAAG CCTATCTAAAATAG GTT TTATCTCAGATAGG TTTTGTGCTTATTTT YPA_4046 4557436 - 4558083 + | phosphoglycerate mutase YPA_4047 4558946 - 4558080 - | right origin-binding protein YPA_4048 4559172 - 4559639 + | hypothetical protein TERM 4980 4559766 - 4559789 + T 70 -7.4 -3.76607 | opp_overlap 4559768, overlap 4559768 GATATAAAAACAAAA AAGCCAGCAT CTGT GTGCTGGCTC TTTCCGTCTCTATTC TERM 4981 4559787 - 4559768 - T 100 -9.3 -5.98675 | opp_overlap 4559766 4559768 TATAAAAACAAAAAA GCCAGCA TCTGTG TGCTGGC TCTTTCCGTCTCTAT TERM 4982 4559768 - 4559787 + T 78 -10 -3.45632 | opp_overlap 4559768, overlap 4559766 TATAAAAACAAAAAA GCCAGCAT CTGT GTGCTGGC TCTTTCCGTCTCTAT YPA_4049 4560529 - 4559813 - | two-component response regulator YPA_4050 4560801 - 4560628 - | hypothetical protein TERM 4983 4561562 - 4561540 - H 100 -12.7 -5.57729 | opp_overlap 4561540 AAACAATAGAAAAAA GCCCGCACC TAGAC AGTGCGGGC TTTTTTTTTCAATCA TERM 4984 4561540 - 4561562 + H 100 -12 -6.11644 | opp_overlap 4561540 AAACAATAGAAAAAA GCCCGCAC CTAGACA GTGCGGGC TTTTTTTTTCAATCA thrA 4561633 - 4564092 + | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 4985 4564375 - 4564396 + G 71 -10.9 -3.13164 | gap 1 ATATGCCGATCGGTT CAGG-GCTGG GTT CCAGCGCCTG TTCAGTGGTTGCCGG YPA_4052 4564095 - 4565024 + | homoserine kinase TERM 4986 4565194 - 4565209 + G 73 -5.4 -4.73613 | gap 1 TTGTGACCCGTAGTA GCCG-CA TTC TGTCGGC TTTTATTGGTAGTGA TERM 4987 4566265 - 4566293 + G 70 -4.6 -4.74801 | TGCTATCCCATGATT TGCCCGCA GACTTTGCACAAA TGCGGGCA TTTTTGATGGCATTG YPA_4053 4565028 - 4566317 + | threonine synthase YPA_4054 4567913 - 4567134 - | hypothetical protein YPA_4055 4568193 - 4568285 + | hypothetical protein TERM 4988 4569103 - 4569086 - g 100 -7 -5.32882 | CAGTACTACAAAAAA CACGGT TATAAG ACCGTG GTGATGGGTGCAAGC YPA_4056 4568441 - 4569394 + | transaldolase B TERM 4989 4569452 - 4569437 - f 74 -10.4 -2.73364 | opp_overlap 4569437 TCGGTATCTGAATGA GGTGGC GCAA GCCACC TTTTTTATTGCCGAT TERM 4990 4569437 - 4569452 + F 100 -10.4 -5.45652 | opp_overlap 4569437 TCGGTATCTGAATGA GGTGGC GCAA GCCACC TTTTTTATTGCCGAT YPA_4057 4569438 - 4569596 + | hypothetical protein mogA 4569682 - 4570269 + | molybdenum cofactor biosynthesis protein TERM 4991 4571427 - 4571437 + G 74 -6.8 -4.37092 | TGATGCTGGCGATGT CGAC ATG GTCG TTTTATCACACCAAT TERM 4992 4571592 - 4571603 + G 78 -5.8 -4.84363 | opp_overlap 4571591 CTTTCTCGTACAATG TGGC CTAT GCCA TTTTTGGTGGTTTAA YPA_4059 4570397 - 4571785 + | putative transport protein TERM 4993 4571798 - 4571840 + T 78 -5.3 -5.04597 | gap 2, opp_overlap 4571804, overlap 4571799 4571804 TAAGTCAATTCACTT TA-AAAAGCCCATAA-TTATT ATC AATAAATTATGGGCTTTTATC TTTTTCTCTATACCT TERM 4994 4571799 - 4571838 + T 91 -10.4 -4.14422 | gap 1, opp_overlap 4571804, overlap 4571798 4571804 AAGTCAATTCACTTT AAAAAGCCCATAA-TTATT ATC AATAAATTATGGGCTTTTA TCTTTTTCTCTATAC TERM 4995 4571804 - 4571833 + T 100 -10.3 -5.02287 | gap 1, opp_overlap 4571804, overlap 4571799 4571798 AATTCACTTTAAAAA GCCCATAA-TTATT ATC AATAAATTATGGGC TTTTATCTTTTTCTC TERM 4996 4571833 - 4571804 - T 100 -10.3 -4.63184 | gap 1, opp_overlap 4571804 4571799 4571798 AATTCACTTTAAAAA GCCCATAA-TTATT ATC AATAAATTATGGGC TTTTATCTTTTTCTC YPA_4060 4574302 - 4571855 - | hypothetical protein TERM 4997 4574009 - 4574036 + g 80 -2.1 -5.48163 | gap 1, opp_overlap 4574009 ATTATATAGTCCAAA TGATTTCATACC GTCTA GGT-TGACATCA TTTTTTAATTTCTTT TERM 4998 4574558 - 4574520 - R 100 -20 -4.55798 | opp_overlap 4574520 GAGTGGAAAGTAAAA GCACCTTGAATATTAAAT TTT ATCTAATATTCAAGGTGC TGTGTAATATAAGCT TERM 4999 4574520 - 4574558 + r 100 -17.8 -2.97925 | opp_overlap 4574520 GAGTGGAAAGTAAAA GCACCTTGAATATTAAAT TTT ATCTAATATTCAAGGTGC TGTGTAATATAAGCT YPA_4061 4575202 - 4574591 - | hypothetical protein TERM 5000 4575008 - 4575022 + g 90 -5.7 -5.31275 | opp_overlap 4574999 GGTAAATGCGGTGGC GGCAA ATGTG TTGCC TTTTTTATACTCCAA TERM 5001 4575128 - 4575114 - G 71 -7.1 -4.16842 | opp_overlap 4575114 CTCAGTGGGAAGAAA CCTGC GTTGT GCAGG TTTAGCAAGACGGTA TERM 5002 4575175 - 4575163 - G 75 -10.5 -3.39668 | overlap 4575155 TCCCAAAGCCCATAA GGCCC AAT GGGCC AGGATTCGCCAACTT TERM 5003 4575914 - 4575904 - g 74 -2.4 -5.12707 | overlap 4575895 4575905 4575906 TTAAAGGCCAAAAAA TGGC ACC GCCG CAGATCTCTGCTGAA YPA_4062 4575576 - 4577486 + | molecular chaperone DnaK TERM 5004 4577572 - 4577535 - f 100 -15.5 -3.53224 | opp_overlap 4577533, overlap 4577538 TACTGTTGCTGGAAA CCAGCACGGGCGTCGAG GAAA CTCTACGCCCGTGCACG CATGTTAAGGGTAGG TERM 5005 4577569 - 4577538 - f 100 -20.2 -2.90496 | opp_overlap 4577533, overlap 4577535 TGTTGCTGGAAACCA GCACGGGCGTCGAG GAAA CTCTACGCCCGTGC ACGCATGTTAAGGGT TERM 5006 4578687 - 4578674 - g 83 -3.1 -5.40072 | TGCTGGTGAAAAAAA TAGCC CGCG AGCTA AAAGTTTCTTAGATG YPA_4063 4577598 - 4578737 + | chaperone protein DnaJ TERM 5007 4578777 - 4578818 + F 74 -9.7 -3.12803 | opp_overlap 4578779 4578788, overlap 4578779 4578788 4578813 CAGCTAATAAAGTAA AATGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTATC TGTTGAATATGGATA TERM 5008 4578779 - 4578816 + F 93 -12.3 -3.12142 | opp_overlap 4578779 4578788, overlap 4578777 4578788 4578813 GCTAATAAAGTAAAA TGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTA TCTGTTGAATATGGA TERM 5009 4578816 - 4578779 - f 75 -5.7 -4.67942 | opp_overlap 4578779 4578777 4578788 4578813, overlap 4578788 GCTAATAAAGTAAAA TGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTA TCTGTTGAATATGGA TERM 5010 4578807 - 4578788 - f 77 -6.4 -4.67692 | opp_overlap 4578788 4578779 4578777, overlap 4578779 GTAAAATGAAAGAAA TCCTCGGT TGAT ATCGAGGA TTTTTTTTATCTGTT TERM 5011 4578788 - 4578807 + F 100 -8.6 -6.08563 | opp_overlap 4578779 4578788, overlap 4578779 4578777 GTAAAATGAAAGAAA TCCTCGGT TGAT ATCGAGGA TTTTTTTTATCTGTT YPA_4064 4578980 - 4580164 + | sodium-proton antiporter TERM 5012 4580188 - 4580217 + F 100 -13.7 -3.2048 | CACGTTATTGATTCA GCATTGCTGCC CAAGCGCA GGCAGCAATGC TTGGTGGAATTTAAA nhaR 4580294 - 4581193 + | transcriptional activator NhaR TERM 5013 4581302 - 4581273 - T 100 -14.5 -3.08344 | opp_overlap 4581279 4581281, overlap 4581281 GCCAAACGATAGAGA TAAAAAAACCGGC CTAA GCCGGTCTTTTTA CAAGCACTCAATGTC TERM 5014 4581279 - 4581296 + T 76 -6.9 -4.57073 | opp_overlap 4581273 4581281, overlap 4581281 CGATAGAGATAAAAA AACCGGC CTAA GCCGGTC TTTTTACAAGCACTC TERM 5015 4581294 - 4581281 - T 100 -9.5 -5.77988 | opp_overlap 4581279 4581281, overlap 4581273 ATAGAGATAAAAAAA CCGGC CTAA GCCGG TCTTTTTACAAGCAC TERM 5016 4581281 - 4581294 + T 81 -9.5 -3.90048 | opp_overlap 4581281 4581273, overlap 4581279 ATAGAGATAAAAAAA CCGGC CTAA GCCGG TCTTTTTACAAGCAC rpsT 4581587 - 4581324 - | 30S ribosomal protein S20 TERM 5017 4581425 - 4581440 + g 76 -6.2 -4.62783 | GATCCACGATTGGTT GCATTT CATT AAATGC TTTTTGCGCTGCGTC TERM 5018 4582378 - 4582405 + G 88 -10.6 -4.15565 | gap 1 CGGTAGGTGATGACT TCCGCTTTGGCGC AGG GCGCCAGGG-GGA TTTTCAACTACTGCA YPA_4067 4582002 - 4582940 + | bifunctional riboflavin kinase/FMN adenylyltransferase ileS 4582972 - 4585788 + | isoleucyl-tRNA synthetase TERM 5019 4585898 - 4585918 + G 76 -4.7 -5.03314 | overlap 4585899 CCACTTTGCTCTGTA TGAATCGGT GCC ACTGATTCC TTTTTTCAACCTAAC lspA 4585788 - 4586297 + | lipoprotein signal peptidase YPA_4070 4586290 - 4586823 + | FKBP-type peptidyl-prolyl cis-trans isomerase ispH 4586804 - 4587757 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 5020 4587834 - 4587817 - f 75 -8.4 -3.767 | opp_overlap 4587812 TATTTACTGACGAAA GCAGCC CTTTGC GGCTGC TTGAGGTTATTGATA TERM 5021 4587969 - 4587986 + F 100 -8.4 -5.55769 | overlap 4587962 TGTCAGCAGTCTGAA GCAGCC CTTTGT GGCTGC TTTTTTATTGTGCCC TERM 5022 4588026 - 4588008 - f 100 -16 -4.37092 | opp_overlap 4588008 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 5023 4588008 - 4588026 + F 100 -16 -3.07307 | opp_overlap 4588008 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_4072 4588139 - 4588597 + | transposase for the IS1541 insertion element TERM 5024 4588675 - 4588699 + F 100 -9.9 -4.44046 | opp_overlap 4588678, overlap 4588677 4588678 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGGGGTAAG TERM 5025 4588677 - 4588697 + F 100 -12.5 -3.82628 | opp_overlap 4588678, overlap 4588675 4588678 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGGGGTA TERM 5026 4588696 - 4588678 - f 100 -16 -4.8048 | opp_overlap 4588677 4588675 4588678 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGGGGT TERM 5027 4588678 - 4588696 + F 100 -16 -2.88854 | opp_overlap 4588678, overlap 4588677 4588675 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGGGGT YPA_4073 4589050 - 4589871 + | dihydrodipicolinate reductase TERM 5028 4589884 - 4589901 + F 84 -6.3 -4.93296 | opp_overlap 4589884 TAATGCTTTAAATTA CAACCAT TGAT GTGGTTG TTTTTATCATAATCA TERM 5029 4589927 - 4589945 + F 85 -2.4 -5.80951 | opp_overlap 4589927 AATCATTTGATAATA GGGCAATA TTT TATTATCC TTTTTTATTTTAAAT TERM 5030 4591084 - 4591063 - g 71 -10.9 -3.05596 | CATCTTCTTATCCAA TGGTCCTGG GGAT CCAGAACCA TGCGATTACGCGATC YPA_4074 4590344 - 4591519 + | carbamoyl phosphate synthase small subunit TERM 5031 4591578 - 4591560 - g 74 -2.2 -5.07275 | opp_overlap 4591570 4591572 4591577, overlap 4591564 GTACAGATATAAAAA GCATCCTG ATT CTGGGCGC AGGCCCGATTGTTAT TERM 5032 4592493 - 4592474 - g 74 -10 -3.53444 | GCACTGGCCTCTAAA GCAACCGG TTTC CCGATTGC CAAGATTGCCGCCAA TERM 5033 4592502 - 4592516 + G 70 -11.4 -2.52896 | CGATTGCCAAGATTG CCGCCA AAC TGGCGG TCGGTTACACACTGG carB 4591535 - 4594768 + | carbamoyl phosphate synthase large subunit TERM 5034 4594821 - 4594794 - T 79 -8.4 -4.07885 | opp_overlap 4594798, overlap 4594798 CATCCGTGGCGAAAA TCAAGGGCGATG GCAA CATCGCCCTTTT TACGTTCGTAGCTTA TERM 5035 4594817 - 4594798 - T 100 -13.6 -3.66908 | opp_overlap 4594798, overlap 4594794 CGTGGCGAAAATCAA GGGCGATG GCAA CATCGCCC TTTTTACGTTCGTAG TERM 5036 4594798 - 4594817 + T 100 -13.6 -4.7629 | opp_overlap 4594794 4594798 CGTGGCGAAAATCAA GGGCGATG GCAA CATCGCCC TTTTTACGTTCGTAG YPA_4076 4595673 - 4594996 - | putative LysE type translocator TERM 5037 4595792 - 4595807 + H 70 -2.6 -4.93296 | CCGATGTGATTCAGT TCATTG AAAT TAATGA TTTTTATCCTGATGG YPA_4077 4595934 - 4596734 + | hypothetical protein YPA_4078 4596725 - 4597186 + | hypothetical protein TERM 5038 4597408 - 4597459 + G 77 -11 -3.37796 | GCTATGCCATGGCAT TTACCGGCTGATTTAGCGTGGTTC AAAC GTAACACGTTAAATAAACCGGTAA TTATGGGTCGTAAGA folA 4597336 - 4597818 + | dihydrofolate reductase TERM 5039 4597883 - 4597848 - f 74 -9.9 -3.13368 | gap 1, opp_overlap 4597853, overlap 4597846 4597842 4597853 4597855 ACATCAAAACAATTA GCATACAGGCCCATTA GGTAA TAATGGGCCTGTTT-C ATTGTGCCCAGAAAA TERM 5040 4597879 - 4597853 - f 100 -15.3 -2.91094 | opp_overlap 4597853, overlap 4597848 4597846 4597842 4597855 AAAACAATTAGCATA CAGGCCCATTA GGTAA TAATGGGCCTG TTTCATTGTGCCCAG TERM 5041 4597853 - 4597879 + F 100 -15.3 -3.9941 | opp_overlap 4597853 4597848 4597846 4597842 4597855 AAAACAATTAGCATA CAGGCCCATTA GGTAA TAATGGGCCTG TTTCATTGTGCCCAG TERM 5042 4597877 - 4597855 - f 86 -12.1 -2.9913 | opp_overlap 4597853, overlap 4597853 4597848 4597846 4597842 AACAATTAGCATACA GGCCCATTA GGTAA TAATGGGCC TGTTTCATTGTGCCC TERM 5043 4597917 - 4597899 - f 100 -16 -4.37092 | opp_overlap 4597899 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 5044 4597899 - 4597917 + F 100 -16 -3.07307 | opp_overlap 4597899 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPA_4080 4598030 - 4598488 + | transposase for the IS1541 insertion element TERM 5045 4598562 - 4598594 + T 100 -11.3 -4.08767 | opp_overlap 4598569 4598591, overlap 4598566 4598568 4598569 4598591 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTAGAAAAATAAA TERM 5046 4598566 - 4598590 + T 100 -9.9 -4.64861 | opp_overlap 4598569, overlap 4598562 4598568 4598569 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTAGAAAAA TERM 5047 4598568 - 4598588 + T 100 -12.5 -3.93868 | opp_overlap 4598569, overlap 4598566 4598562 4598569 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTAGAAA TERM 5048 4598569 - 4598587 + T 100 -16 -2.95598 | opp_overlap 4598569, overlap 4598568 4598566 4598562 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTAGAA TERM 5049 4598587 - 4598569 - T 100 -16 -4.8048 | opp_overlap 4598569 4598568 4598566 4598562 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTAGAA TERM 5050 4598591 - 4598609 + T 72 -6.2 -4.34737 | opp_overlap 4598591, overlap 4598562 CTATGCCGGAGGATA TTTATTTT AGA AAAATAAA TTTATTACTTAATGG YPA_4081 4598756 - 4598592 - | hypothetical protein YPA_4082 4599023 - 4599244 + | hypothetical protein YPA_4083 4599371 - 4599835 + | hypothetical protein TERM 5051 4599887 - 4599858 - T 77 -10.9 -2.78706 | opp_overlap 4599863, overlap 4599863 AATTATAGGTGAAAT CTAAAGACGCATA AGCT CATGCGTCTTTAA TTAGCGTCTTTACAA TERM 5052 4599863 - 4599882 + T 74 -7.9 -3.93026 | opp_overlap 4599858 4599863 TAGGTGAAATCTAAA GACGCAT AAGCTC ATGCGTC TTTAATTAGCGTCTT TERM 5053 4599882 - 4599863 - T 75 -8.6 -3.85165 | opp_overlap 4599863, overlap 4599858 TAGGTGAAATCTAAA GACGCATA AGCT CATGCGTC TTTAATTAGCGTCTT apaH 4600794 - 4599925 - | diadenosine tetraphosphatase apaG 4601188 - 4600811 - | ApaG ksgA 4602020 - 4601202 - | dimethyladenosine transferase pdxA 4603017 - 4602013 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 5054 4602933 - 4602903 - GR 95 -14.1 -2.62396 | GATCCGCGCAGACTA CCAGCTCAACAGG CCAAT CCTGTTGAGCCAG AGTGATGGCTAAATC YPA_4088 4604296 - 4602992 - | peptidyl-prolyl cis-trans isomerase SurA YPA_4089 4606742 - 4604364 - | organic solvent tolerance protein djlA 4606891 - 4607724 + | DNA-J like membrane chaperone protein YPA_4091 4608642 - 4608022 - | ribosomal large subunit pseudouridine synthase A YPA_4092 4608686 - 4608811 + | hypothetical protein TERM 5055 4609709 - 4609735 + T 100 -15.4 -3.16881 | opp_overlap 4609711 ATATATTTGGGGTAA TAGTGTCCATTA AGA TAATGGACACTA TTCGTCAGATACGTG TERM 5056 4609733 - 4609711 - T 100 -13.6 -3.02263 | opp_overlap 4609709 ATATTTGGGGTAATA GTGTCCATTA AGA TAATGGACAC TATTCGTCAGATACG YPA_4093 4610527 - 4609865 - | hypothetical protein YPA_4094 4610953 - 4611951 + | hypothetical protein YPA_4095 4611962 - 4612522 + | hypothetical protein TERM 5057 4612654 - 4612668 + G 70 -11.4 -2.52015 | overlap 4612653 TCCGCCACAGTGCGC CGTGCC ATA GGCACG CTTGCTGCGTATGCC YPA_4096 4612522 - 4613187 + | hypothetical protein YPA_4097 4614010 - 4613231 - | transposase/IS protein TERM 5058 4613929 - 4613943 + g 77 -11.4 -3.3506 | overlap 4613942 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPA_4098 4615032 - 4614010 - | transposase for insertion sequence IS100 TERM 5059 4615054 - 4615036 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPA_4099 4615914 - 4615114 - | hypothetical protein TERM 5060 4615498 - 4615483 - G 70 -8.2 -3.69338 | opp_overlap 4615487, overlap 4615474 4615486 AACCAACCCTAATAA GAGCGC CATT GCGCCC TGCCCACTGGCTATC YPA_4100 4616501 - 4615911 - | two-component system response regulator TERM 5061 4616610 - 4616582 - R 74 -4.6 -4.81551 | gap 1, overlap 4616583 4616584 GAGGCACATCAAAAA TTGGGCCAGACTT GGGT AAGCCTGGCC-AG TTACGGCTAAATTGC TERM 5062 4616609 - 4616584 - R 71 -9.7 -2.68202 | overlap 4616583 4616582 GGCACATCAAAAATT GGGCCAGACTT GGGT AAGCCTGGCCA GTTACGGCTAAATTG YPA_4101 4618308 - 4616617 - | phosphoethanolamine transferase TERM 5063 4618729 - 4618704 - R 100 -10.3 -4.46656 | overlap 4618705 4618706 GGCAGAAGAGTAAAA TGCCCGCGCCA GAGA TGGCGCGGGTC GAGCTCCCAAGGAAG TERM 5064 4618728 - 4618705 - R 100 -13.8 -3.27271 | overlap 4618704 4618706 GCAGAAGAGTAAAAT GCCCGCGCCA GAGA TGGCGCGGGT CGAGCTCCCAAGGAA TERM 5065 4618727 - 4618706 - R 100 -17.3 -2.5564 | overlap 4618705 4618704 CAGAAGAGTAAAATG CCCGCGCCA GAGA TGGCGCGGG TCGAGCTCCCAAGGA TERM 5066 4618810 - 4618821 + r 82 -5.8 -5.00616 | overlap 4618806 GTCGCGAGCACGTTG CCAG CAGC CTGG TTTTTTGCAGGCAAA YPA_4102 4620300 - 4618837 - | hypothetical protein TERM 5067 4620090 - 4620107 + g 70 -2.1 -5.00895 | gap 1, overlap 4620090 4620091 TAATTCGGACTTCAT C-GAAAAT ATT ATTTTCAG TTTTTATGTAATCCG TERM 5068 4620219 - 4620239 + g 73 -9.1 -3.72324 | opp_overlap 4620218 GTGTATCGTAGATAC GTATTGCCA GTA TGGTAATAC TTATTACTACCAATA TERM 5069 4620756 - 4620719 - R 82 -4.9 -5.41143 | gap 1, overlap 4620723 4620724 CATGCTTGAAAAAAA TAAATCGGGCCGCTGATA CCC CATCAACCGCCCG-TTAA CATTTGTTCCCTTAC TERM 5070 4620753 - 4620723 - R 100 -8.2 -5.20328 | overlap 4620719 4620724 CTTGAAAAAAATAAA TCGGGCCGCTGATA CCC CATCAACCGCCCGT TAACATTTGTTCCCT TERM 5071 4620752 - 4620724 - R 90 -11.7 -3.7057 | overlap 4620723 4620719 TTGAAAAAAATAAAT CGGGCCGCTGATA CCC CATCAACCGCCCG TTAACATTTGTTCCC YPA_4103 4622171 - 4620768 - | amino acid permease YPA_4104 4624121 - 4622589 - | histidine ammonia-lyase YPA_4105 4625809 - 4624118 - | urocanate hydratase TERM 5072 4625121 - 4625104 - G 71 -6.9 -4.20769 | opp_overlap 4625102 4625104 ACAGTGCAATAGAAA CCGCGAC ACCT GTAGCGG TATATTTCTCGATGC YPA_4106 4626536 - 4627480 + | pyridoxal-phosphate dependent protein TERM 5073 4628011 - 4627994 - g 71 -7.1 -4.20696 | opp_overlap 4627996 GCATTAACGTTAAAA CACTAAT GAAA ATTAGTG TTAAACCTCATGGGG YPA_4107 4627477 - 4628043 + | adenine phosphoribosyltransferase TERM 5074 4629041 - 4629024 - g 73 -2.7 -4.99043 | overlap 4629027 TCGGCATAAACAAAA TTATTGG GAAC CCAAAAA CAAAAGGGGCATAAC YPA_4108 4628126 - 4629055 + | hypothetical protein YPA_4109 4629057 - 4629551 + | hypothetical protein TERM 5075 4629543 - 4629561 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPA_4110 4629565 - 4630587 + | transposase for insertion sequence IS100 TERM 5076 4630668 - 4630654 - g 77 -11.4 -3.3506 | overlap 4630645 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPA_4111 4630587 - 4631366 + | transposase/IS protein TERM 5077 4631517 - 4631527 + G 91 -6.8 -5.17054 | opp_overlap 4631507 CAAGATAAGCAGAGT GCGT ATC ACGC TTTTTTGGCTATTCT TERM 5078 4631812 - 4631801 - g 76 -5.8 -4.72272 | opp_overlap 4631805, overlap 4631802 TCTGGGGATCAAAAA TGGC CCTA GCCA TGCGGAGGTGATGAT YPA_4112 4631382 - 4632260 + | hypothetical protein YPA_4113 4632783 - 4633736 + | putative iron transport protein YPA_4114 4633746 - 4634705 + | putative iron transport permease TERM 5079 4634789 - 4634809 + G 83 -9.7 -4.25256 | overlap 4634786 TATTGCTACTGAGCA TCATCGCTC TCG GTGCGATGA TTATTTTCATGACAA YPA_4115 4634695 - 4635702 + | putative iron transport permease YPA_4116 4635699 - 4636457 + | putative iron ABC transporter, ATP-binding protein YPA_4117 4637017 - 4636454 - | hypothetical protein YPA_4118 4637375 - 4637190 - | hypothetical protein YPA_4119 4638459 - 4638821 + | putative regulator TERM 5080 4639273 - 4639260 - g 76 -5.2 -4.76041 | overlap 4639262 CATAGTCAGGAAAAA CGCC GCGTCT GGCG AAAACGGCACCTTGC YPA_4120 4638993 - 4639499 + | putative transposase YPA_4121 4639535 - 4639792 + | hypothetical protein TERM 5081 4640272 - 4640290 + T 76 -6.7 -4.55287 | overlap 4640271 GGCTCTCACCACTTC GCCCTTG CCGTT TAAGGGC TTTTCTCTGGCTAGC YPA_4122 4641951 - 4640479 - | hypothetical protein YPA_4123 4643038 - 4641845 - | putative phage integrase YPA_4124 4644617 - 4643424 - | AraC family transcriptional regulator TERM 5082 4644688 - 4644669 - R 82 -5.7 -4.91459 | opp_overlap 4644669 GAACAGGCAGAAAAA TCAGCGC GGTATG GCACTGA TTTTCCTATGGGATA YPA_4125 4645891 - 4644707 - | sugar transport system permease protein TERM 5083 4645604 - 4645591 - G 72 -3.8 -4.84527 | overlap 4645592 GCCAGACATCAAAAA TGGC CGCTAT GCCA CCCAATAACCCCATC YPA_4126 4647410 - 4645878 - | xylose transporter ATP-binding subunit TERM 5084 4647099 - 4647082 - G 80 -10.5 -3.727 | overlap 4647071 4647076 TCCATGATACCGAAA CGGCCCC ATTC GGAGCCG AGGAACATGTTCTCC xylF 4648613 - 4647618 - | D-xylose transporter subunit XylF TERM 5085 4648755 - 4648770 + H 70 -2.6 -4.95484 | overlap 4648757 GTTTAATGTTAATTT TATGAT AACG ATCATG TTTTCTTTCCTCATA TERM 5086 4649059 - 4649049 - H 74 -6.8 -4.2717 | opp_overlap 4649037 ACCAGCCCAGCAAAA GCAG GGC CTGC TTCCAAGGAGTATTG YPA_4128 4649076 - 4650395 + | xylose isomerase TERM 5087 4650786 - 4650820 + G 76 -5.7 -4.59773 | gap 1, opp_overlap 4650774 4650782 AAACAACATCAGGTG CTGCGCCCCGCCATTT TATG GAATGACGGC-CGCAG TTTTTCCCAGTGCCA TERM 5088 4651502 - 4651477 - g 84 -4.6 -5.28176 | opp_overlap 4651477 CTGAGGTAGAAAAAA CCCCAATGGC TGCAAC GCCAGTGTGG TTCCTACCCTATCTT YPA_4129 4650519 - 4651973 + | xylulose kinase TERM 5089 4652035 - 4652065 + T 100 -9.1 -4.82901 | opp_overlap 4652034 4652032 4652035, overlap 4652036 AGTGCGAATAAACAC CGTGCTGGGTAAT TCATT ATTACTCAGCACA TTTTTATAGGGCCAC TERM 5090 4652036 - 4652064 + T 100 -12.6 -3.49419 | opp_overlap 4652035 4652034 4652032, overlap 4652035 GTGCGAATAAACACC GTGCTGGGTAAT TCATT ATTACTCAGCAC ATTTTTATAGGGCCA YPA_4130 4653077 - 4652091 - | hypothetical protein YPA_4131 4653883 - 4653116 - | putative fimbrial chaperone TERM 5091 4653234 - 4653212 - G 70 -11.4 -2.69717 | overlap 4653211 4653207 ATCCATATAACCAAC GTTATAACGG CTA CCGCTATAAC CCGGCGTTTTAACAA YPA_4132 4654209 - 4653976 - | outer membrane fimbrial usher porin YPA_4133 4654611 - 4654210 - | outer membrane fimbrial usher porin TERM 5092 4654528 - 4654540 + g 73 -6.3 -4.5448 | CCAGTTGGTATTGAT TGAGT TGT ACTCA TTATTTTTATGGCTA YPA_4134 4656466 - 4654637 - | hypothetical protein TERM 5093 4656424 - 4656438 + g 100 -2.1 -6.34616 | TTGTTAATACTTTCA CCATT AGGAA GATGG TTTTTTTTCTTTTAG TERM 5094 4656496 - 4656529 + r 93 -11.9 -3.66497 | opp_overlap 4656497 4656500, overlap 4656488 4656497 4656500 4656505 CTTATGGCGATAATA TTAATTAGAGGGGAG TTAC CTCCCCTTTAATTAC TTTAAACATTTGTTA TERM 5095 4656528 - 4656497 - R 90 -13.2 -2.53271 | opp_overlap 4656496 4656488 4656497 4656500 4656505, overlap 4656500 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 5096 4656497 - 4656528 + r 100 -15.4 -2.79175 | opp_overlap 4656497 4656500, overlap 4656496 4656488 4656500 4656505 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 5097 4656525 - 4656500 - R 80 -10.5 -3.41745 | opp_overlap 4656497 4656496 4656488 4656500 4656505, overlap 4656497 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 5098 4656500 - 4656525 + r 100 -12.7 -3.5332 | opp_overlap 4656500 4656497, overlap 4656497 4656496 4656488 4656505 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 5099 4656505 - 4656520 + r 89 -10.4 -4.04394 | opp_overlap 4656500 4656497, overlap 4656500 4656497 4656496 4656488 ATAATATTAATTAGA GGGGAG TTAC CTCCCC TTTAATTACTTTAAA YPA_4135 4657099 - 4656542 - | fimbrial protein TERM 5100 4657780 - 4657807 + r 75 -3.4 -5.24129 | opp_overlap 4657780 TTTAACACAATCCAA GCCACTGAGA ATAAACCC TCTCGGTAGC TTTTTTATAAACCAA TERM 5101 4657851 - 4657832 - R 85 -4.4 -5.50925 | opp_overlap 4657848 AACCAAGATAAAAAA TAACTTTA GCAT TAAAGTCA GTGTCGTATATTGGC YPA_4136 4658973 - 4657981 - | hypothetical protein TERM 5102 4658552 - 4658562 + g 70 -8.2 -3.67976 | ATTGCCAGATAGCGG CCCG AAA CGGG TTTAACCTTAATAAG TERM 5103 4659336 - 4659280 - g 73 -10.3 -3.30159 | gap 1, opp_overlap 4659285 4659290 4659295, overlap 4659281 4659290 CCAATGGGGCCATAA GTGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCAA TGAAACACCCTTTTT TERM 5104 4659335 - 4659281 - g 78 -13.8 -2.57881 | gap 1, opp_overlap 4659285 4659290 4659295, overlap 4659280 4659290 CAATGGGGCCATAAG TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 5105 4659285 - 4659331 + G 89 -15.4 -3.05384 | gap 1, opp_overlap 4659281 4659280 4659290, overlap 4659290 4659295 GGGGCCATAAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 5106 4659290 - 4659326 + G 73 -10.3 -3.19192 | gap 1, opp_overlap 4659290 4659281 4659280, overlap 4659285 4659295 CATAAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 5107 4659325 - 4659290 - g 79 -12.7 -3.08471 | opp_overlap 4659285 4659290 4659295, overlap 4659281 4659280 CATAAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 5108 4659295 - 4659305 + G 76 -5.4 -4.88736 | opp_overlap 4659290 4659281 4659280, overlap 4659290 4659285 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPA_4137 4659177 - 4659851 + | insertion element IS1661 DNA-binding protein TERM 5109 4660671 - 4660653 - g 71 -11 -2.73735 | overlap 4660643 4660641 4660664 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPA_4138 4659905 - 4660690 + | transposase for insertion sequence IS1661 TERM 5110 4660746 - 4660724 - T 75 -9 -3.59979 | GGGGTTCAGTGCAAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG YPA_4139 4661890 - 4661081 - | sugar phosphatase TERM 5111 4662069 - 4662042 - R 93 -4.1 -5.81412 | gap 1 TTCAGGCAAAAAAAA GCCCAGTGGCAG TTTTC CCACC-CTGGAC TTTTTTATCTGGCCA gyrB 4664520 - 4662106 - | DNA gyrase subunit B recF 4665823 - 4664540 - | recombination protein F TERM 5112 4664855 - 4664866 + gr 72 -7.2 -4.03234 | ACCATCGGCCCGAAT GCGG AAAT CCGC TTTATGTGGCCCAAC TERM 5113 4665128 - 4665146 + gr 89 -12.4 -2.7556 | opp_overlap 4665125, overlap 4665130 ATAGCGACTAACCTG GCGCAGCG CGG CGTTGCGC TGCTTGAGTAACCTT TERM 5114 4665130 - 4665149 + gr 84 -11.4 -3.10082 | opp_overlap 4665125, overlap 4665128 AGCGACTAACCTGGC GCAGCGCG GCGT TGCGCTGC TTGAGTAACCTTTTT TERM 5115 4665246 - 4665225 - GR 76 -4.3 -5.0538 | opp_overlap 4665224 CCCCAGTCTAAAAAA GCGCGCC GGAATTTT GGCCCGC CATTTAATAACGTAA YPA_4142 4666898 - 4665798 - | DNA polymerase III subunit beta dnaA 4668291 - 4666903 - | chromosomal replication initiation protein TERM 5116 4668959 - 4668973 + H 75 -7.2 -4.29139 | AGCAGCCAAACGCGT TTACTG AAT CAGTAA TTATTTTAAGTTTAG rpmH 4669001 - 4669141 + | 50S ribosomal protein L34 rnpA 4669160 - 4669519 + | ribonuclease P TERM 5117 4669521 - 4669557 + GF 100 -16.7 -3.14211 | CTCCCGCATCCTGAT CGGGCTGATTAGGGGCT ATC AGCTCGTAATCAGTCCG TTGCTGGGGCCGCGT YPA_4146 4669483 - 4669740 + | hypothetical protein TERM 5118 4669904 - 4669888 - g 70 -9.3 -3.6053 | overlap 4669884 CCGGTGATAAAGCAA GCCAGGC TGT GCCAGGC AGCGGTCAGGGTCAA TERM 5119 4670705 - 4670689 - g 82 -6.5 -4.79955 | AGATTCAGAATAAAA TGGCGGA AAT TGCGCCA CATCTGGACCTGACT TERM 5120 4671369 - 4671351 - g 73 -5.9 -4.56597 | CGTGGTCTGGAAAAA CGTGGCT TACAC AGCCGCG AGAAGAAAAAATAAC YPA_4147 4669743 - 4671383 + | putative inner membrane protein translocase component YidC TERM 5121 4671408 - 4671432 + F 100 -15.1 -4.40561 | overlap 4671405 ATAATCATGAGTATT TAGGGCGGTCA ATA TGACCGCCTTA TTCTTTTTACAGAAG TERM 5122 4672263 - 4672285 + G 71 -7.7 -4.07568 | opp_overlap 4672263, overlap 4672265 GGCGATTGTAACGGA TATCGCGGG CACCA CCCGTGATG TTTTACGGGAACACA trmE 4671526 - 4672890 + | tRNA modification GTPase TrmE TERM 5123 4673101 - 4673088 - g 73 -5.9 -4.4891 | opp_overlap 4673083 4673088 CCCATGATTATAAAA CCACG TGTA CGCGG CTTTATCTGTGTGAC TERM 5124 4673273 - 4673289 + G 72 -3.6 -4.86731 | AGCATTTGGTTGTGG CGCCGA TACGC TGGGCG TTTTCTTTGAACGCC TERM 5125 4673410 - 4673395 - g 73 -5.4 -4.65895 | opp_overlap 4673395 GCTTGTACGCAAAAA GCATCA ACGG CGATGC GTTCTCTGATGAGAT YPA_4149 4673076 - 4674275 + | trans-2-enoyl-CoA reductase TERM 5126 4674289 - 4674333 + T 78 -9.3 -3.73534 | opp_overlap 4674298, overlap 4674291 4674298 AAGCTCCGGTTTATT GCTCAATAACCTGCTGCGTCA CTA TCACGCAGCAGGTTGATCATC TTCTTACTGGGGTTA TERM 5127 4674291 - 4674331 + T 80 -10.5 -3.44552 | opp_overlap 4674298, overlap 4674289 4674298 GCTCCGGTTTATTGC TCAATAACCTGCTGCGTCA CTA TCACGCAGCAGGTTGATCA TCTTCTTACTGGGGT TERM 5128 4674298 - 4674324 + T 100 -15.2 -3.30452 | opp_overlap 4674298, overlap 4674291 4674289 TTTATTGCTCAATAA CCTGCTGCGTCA CTA TCACGCAGCAGG TTGATCATCTTCTTA TERM 5129 4674324 - 4674298 - T 100 -15.2 -3.62597 | opp_overlap 4674298 4674291 4674289 TTTATTGCTCAATAA CCTGCTGCGTCA CTA TCACGCAGCAGG TTGATCATCTTCTTA YPA_4150 4675024 - 4674743 - | hypothetical protein YPA_4151 4675706 - 4675086 - | hypothetical protein YPA_4152 4677636 - 4676251 - | xanthine/uracil permease family protein TERM 5130 4676684 - 4676669 - G 78 -6 -4.75219 | GAAGTACCAATAAAA GCACCG GCAA CGGAGC TGATACTGTCCACAT TERM 5131 4677039 - 4677014 - G 76 -6.1 -4.73677 | overlap 4677016 GCGATAATAAAGAAA CCCAGTGCACC CAAC AGTACACTGTG AGAGGTCAGATTACC TERM 5132 4677644 - 4677659 + H 75 -3.2 -5.19916 | AAAATCATTTGTTTA GAGCGT GATC ACACTC TTTTTTACCTCTTTT TERM 5133 4677890 - 4677864 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 4677873, overlap 4677865 4677880 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 5134 4677891 - 4677865 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 4677873, overlap 4677864 4677880 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 5135 4678602 - 4678617 + G 87 -8.2 -4.75472 | overlap 4678592 4678593 CCAGGCCGGGATTGC CGCCGG TATT CCGGTG TTTTATTACTGTGCC YPA_4153 4678072 - 4678740 + | 6-phosphogluconate phosphatase YPA_4154 4679530 - 4678775 - | putative amino acid transport system permease TERM 5136 4679427 - 4679407 - G 74 -11.1 -3.0395 | ACACAGTGCCTAATA CGGCTGAGG CTA CCCCAGCCA TGATACTGATCACCA YPA_4155 4680269 - 4679532 - | ABC transporter permease YPA_4156 4681213 - 4680452 - | putative periplasmic solute-binding protein YPA_4157 4682196 - 4681525 - | hypothetical protein TERM 5137 4682482 - 4682458 - R 100 -7.8 -5.626 | GAGTGGATAAAAAAA CCGGTCAAAC GAGTA GGCTGACCGG GGTTAAATATTATTT YPA_4158 4683214 - 4682492 - | transcriptional regulator PhoU YPA_4159 4684078 - 4683302 - | phosphate transporter subunit pstA 4685046 - 4684159 - | phosphate transporter permease subunit pstC 4686019 - 4685048 - | phosphate transporter permease subunit YPA_4162 4687273 - 4686233 - | phosphate transporter subunit TERM 5138 4687708 - 4687691 - R 100 -9.1 -5.61913 | opp_overlap 4687691 AATAAAGACAAAAAA GCCGACA AATT TGCCGGC TTTCGTTAATACGCT YPA_4163 4689585 - 4687756 - | D-fructose-6-phosphate amidotransferase glmU 4691156 - 4689786 - | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 5139 4690408 - 4690381 - G 71 -5.4 -4.54727 | CCGCGCAAATCAAAA CGGGAGGGATCC AATA GCATCACGCCCG CTAACAATAATTTTT TERM 5140 4690582 - 4690572 - G 71 -5.4 -4.55287 | GTCAGTGATATAAAA CTCA CCT TGAG CATTATTATTATCCA TERM 5141 4690799 - 4690776 - G 70 -8.8 -3.63515 | TTTTACTGTCAACAA GCCAATCCCG CCCT CGGGCTTAGC GGCCAGCAGACGTTG TERM 5142 4691315 - 4691332 + r 91 -4.8 -5.61596 | AAAAGTGTCGGTGAT CGGCGA CGTTTT TTGCCG TTTTTTTGTCAAAAT TERM 5143 4691427 - 4691394 - R 100 -10.6 -4.57353 | gap 1, opp_overlap 4691393 4691394 TTTTACGACAGAAAA CAAGGATTATCCGAA AGAAA TTCG-ATAATCCTTG CTTATGATTTATTGA TERM 5144 4691394 - 4691427 + r 75 -10.6 -2.80654 | gap 1, opp_overlap 4691394, overlap 4691393 TTTTACGACAGAAAA CAAGGATTATCCGAA AGAAA TTCG-ATAATCCTTG CTTATGATTTATTGA TERM 5145 4691628 - 4691653 + r 93 -11.9 -3.62476 | opp_overlap 4691628 ATAAGTATTAAAAAA TGCCAGTCAGT TTTC ACCGACTGGCA TTCTATCGTTACTTA TERM 5146 4691653 - 4691628 - R 100 -14.1 -5.22794 | opp_overlap 4691628 ATAAGTATTAAAAAA TGCCAGTCAGT TTTC ACCGACTGGCA TTCTATCGTTACTTA atpC 4692190 - 4691777 - | F0F1 ATP synthase subunit epsilon YPA_4166 4693603 - 4692221 - | F0F1 ATP synthase subunit beta YPA_4167 4694622 - 4693759 - | F0F1 ATP synthase subunit gamma TERM 5147 4693855 - 4693878 + g 70 -8 -3.76402 | CAGCTCTTTGATCAG GCTACCGCCG TTAT CGGTGGCGGC TTTCATCGCTACCAT TERM 5148 4694676 - 4694646 - R 89 -12.7 -2.82516 | gap 1, overlap 4694671 CTCCTCATTACCAGA CGG-CCTGCTTTCC TAAC GAAAAGCAGGACCG CATAGCGTTACCAGG YPA_4168 4696225 - 4694684 - | F0F1 ATP synthase subunit alpha YPA_4169 4696773 - 4696240 - | F0F1 ATP synthase subunit delta YPA_4170 4697258 - 4696788 - | F0F1 ATP synthase subunit B YPA_4171 4697559 - 4697320 - | F0F1 ATP synthase subunit C YPA_4172 4698433 - 4697609 - | F0F1 ATP synthase subunit A TERM 5149 4698111 - 4698091 - G 76 -6.1 -4.71426 | TGTTCATCAATAAAA CCCAAACAA AGA CTGTTAGGG CTAATGGTGCGATGA YPA_4173 4698856 - 4698473 - | F0F1 ATP synthase subunit I gidB 4700143 - 4699523 - | glucose-inhibited division protein B YPA_4175 4702178 - 4700289 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA