TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.509939 %AT, 3781278 nt, 30967 terms. Intergenic: 0.583629 %AT, H2T: 595547 nt, 4548 terms; T2T: 166861 nt, 3238 terms; H2H: 269511 nt, 3756 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|108793732|ref|NC_008118.1| Yersinia pestis Nepal516 plasmid pMT, complete sequence (length 100918) YPN_MT0001 87 - 1109 + | transposase TERM 1 1190 - 1176 - g 77 -11.4 -3.3506 | overlap 1167 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_MT0002 1109 - 1888 + | transposase/IS protein YPN_MT0003 2630 - 2022 - | hypothetical protein TERM 2 2378 - 2389 + g 71 -7.2 -4.11404 | opp_overlap 2376 2378, overlap 2369 GTTCAGCGATGAACA CCGG TTCA CCGG TTTCTGTGCTGTAAA YPN_MT0004 5820 - 2932 - | phage tail protein TERM 3 4982 - 5016 + g 83 -12.8 -3.6106 | overlap 4984 5013 GCTTCATTTTCACTA TTGGCTGCCGCTGCTT CTG AAGCAGCAGCAGCCTC TTTAGAGGTCTTGGC TERM 4 4984 - 5014 + g 100 -19.8 -3.38201 | overlap 4982 5013 TTCATTTTCACTATT GGCTGCCGCTGCTT CTG AAGCAGCAGCAGCC TCTTTAGAGGTCTTG TERM 5 5107 - 5137 + g 70 -8.2 -3.68726 | CGCAGCAGCCTTGCT TTCAGCCGCATTGG TCT CTGACGCGGCAGAA TTATCTTCAGATGTT TERM 6 5223 - 5246 + g 71 -5.2 -4.46926 | overlap 5225 CCGATGCTTTTGATG CAGCGGCA CTTAGCTC TGCCGCAG TTTTATACTCAGATG TERM 7 5856 - 5837 - R 76 -9.2 -3.53012 | TTCGCTCCTTGTAAA GGCGGGCA TCCC TGCTCGCC ATAGGTAATCACTTA TERM 8 5921 - 5896 - R 71 -4.7 -4.63044 | gap 1 ACCGATATAAAGAAA GATGTCTACCGC CGA GCAG-AGCCATC CCCCCACCCGACCTG YPN_MT0005 6518 - 5901 - | hypothetical protein YPN_MT0006 11167 - 6536 - | phage tail protein YPN_MT0007 11776 - 11189 - | phage tail protein YPN_MT0008 12522 - 11764 - | phage tail protein YPN_MT0009 13252 - 12554 - | phage tail protein TERM 9 13299 - 13273 - R 95 -9.4 -4.41348 | overlap 13275 CTTCCTTGAAATAAA GAGGCGCCAACA TCC TGTCAGCGCCTA TAGATAATAGTAAAT TERM 10 13297 - 13275 - R 100 -12 -3.81557 | overlap 13273 TCCTTGAAATAAAGA GGCGCCAACA TCC TGTCAGCGCC TATAGATAATAGTAA YPN_MT0010 13677 - 13342 - | phage tail protein YPN_MT0011 18296 - 13719 - | membrane protein TERM 11 15118 - 15143 + g 82 -10.5 -3.94409 | gap 1, overlap 15117 TCGTCGCTCGCGTTC GCCAGGTCAGCG AGG CG-TGACTTGGC TTTGTCGATCATCTC TERM 12 16763 - 16773 + g 76 -6.8 -4.56597 | opp_overlap 16763 TGCCCAGGCTGATAA CCAG CTC CTGG TTTTTAGCCAGCCAC TERM 13 18080 - 18092 + g 78 -6.3 -4.85599 | GCTCGAAGCCGGCAG CTACA TCC TGTAG TTTTTCTGCCGTGAC YPN_MT0012 18537 - 18304 - | hypothetical protein YPN_MT0013 18971 - 18654 - | hypothetical protein TERM 14 19014 - 18992 - R 76 -7.7 -4.0896 | opp_overlap 18992 18994, overlap 18981 18994 AAAGTCCTTTTAAAA GAGAGGCTC TTCCT GAGCCTCTG CTTAATTACGTCGCG TERM 15 19012 - 18994 - R 82 -10.3 -3.63922 | opp_overlap 18994 18992, overlap 18992 AGTCCTTTTAAAAGA GAGGCTC TTCCT GAGCCTC TGCTTAATTACGTCG TERM 16 18994 - 19012 + r 75 -10.3 -2.8507 | opp_overlap 18992 18994, overlap 18992 AGTCCTTTTAAAAGA GAGGCTC TTCCT GAGCCTC TGCTTAATTACGTCG YPN_MT0014 19777 - 19031 - | hypothetical protein TERM 17 19239 - 19278 + g 84 -10.8 -4.10453 | gap 1, opp_overlap 19276, overlap 19228 19274 AGTTGCACGGTCTCA CCGGCTTTAACT-TCCGGA GAT TCCGGAGAGATAGAGACGG TTTTAACCGGCTTTG YPN_MT0015 20235 - 19852 - | hypothetical protein YPN_MT0016 20710 - 20237 - | hypothetical protein YPN_MT0017 21045 - 20701 - | hypothetical protein YPN_MT0018 21976 - 21143 - | hypothetical protein YPN_MT0019 22410 - 21976 - | hypothetical protein TERM 18 22424 - 22449 + r 95 -12.7 -3.33696 | gap 1, opp_overlap 22427, overlap 22425 22427 ATTCTTCTTCTCACT TA-ATGGGCGGC TAT GCCGCCCATGTA TTGGTTACGCAGCCG TERM 19 22425 - 22447 + r 100 -13.4 -3.23853 | opp_overlap 22427, overlap 22424 22427 TTCTTCTTCTCACTT AATGGGCGGC TAT GCCGCCCATG TATTGGTTACGCAGC TERM 20 22445 - 22427 - R 100 -16 -3.05384 | opp_overlap 22427 22425 22424 CTTCTTCTCACTTAA TGGGCGGC TAT GCCGCCCA TGTATTGGTTACGCA TERM 21 22427 - 22445 + r 100 -16 -3.18366 | opp_overlap 22427, overlap 22425 22424 CTTCTTCTCACTTAA TGGGCGGC TAT GCCGCCCA TGTATTGGTTACGCA YPN_MT0020 22654 - 22454 - | hypothetical protein YPN_MT0096 23046 - 22555 - | hypothetical protein TERM 22 23065 - 23085 + r 100 -14 -3.10164 | opp_overlap 23065 TCGCTCCTACAAAAA GGGTGGGC GTATA GCCCACCC TTAAATGGTAGATAA TERM 23 23085 - 23065 - R 100 -14 -4.82901 | opp_overlap 23065 TCGCTCCTACAAAAA GGGTGGGC GTATA GCCCACCC TTAAATGGTAGATAA YPN_MT0021 23996 - 23121 - | hypothetical protein YPN_MT0022 24394 - 24023 - | hypothetical protein YPN_MT0023 24923 - 24468 - | hypothetical protein YPN_MT0024 26535 - 24946 - | hypothetical protein YPN_MT0025 27810 - 26554 - | hypothetical protein TERM 24 27520 - 27547 + g 74 -2.6 -5.06414 | overlap 27523 GATTTCAGAGCCGTT CTTCAGCACGAT GGTC ATCGTGGTGTCG TTTTTCTTACGAACC TERM 25 27607 - 27649 + g 80 -9.8 -4.04188 | ATCCCACAAGATCTG GCGAGCCATCTGGTACGTCG GTG CGACGTACCAGACACGTTGC TTCTTCTCTTTGGCT YPN_MT0026 28454 - 27813 - | hypothetical protein TERM 26 28421 - 28439 + g 72 -3.8 -4.86001 | ACTCAGCTGGCGTCA GGCGAG TTTTGCT CTCGTC TTTTTCTACAGTCAT TERM 27 28624 - 28570 - R 89 -11.9 -3.37796 | gap 2, opp_overlap 28588 28591 GGGGAGTATTCAGAA CCTGCTTCCGTATATAT--TTAATAAG TCA CTTAGTATTTATATATACGGAAGCAGG CTCTCAAACTGGCTC YPN_MT0027 28916 - 28650 - | hypothetical protein YPN_MT0028 29816 - 28926 - | hypothetical protein YPN_MT0029 30076 - 29822 - | hypothetical protein TERM 28 29952 - 29964 + g 83 -9.1 -4.34267 | opp_overlap 29925 29926 29951 29952 TTGATCATCAGCAAC GCCAG ACT CTGGC TTTTACCTTCTCTGG YPN_MT0030 30707 - 30069 - | ABC transporter ATP-binding protein TERM 29 30387 - 30406 + g 80 -10 -4.08945 | gap 1, opp_overlap 30383 30386 30381, overlap 30389 GGCCATAGACAGCAG CC-CCAGCG CAT CGCTGGTGG TTTTGCCCAACTGGT TERM 30 30389 - 30403 + g 74 -11.4 -3.08211 | opp_overlap 30383 30386 30381, overlap 30387 CCATAGACAGCAGCC CCAGCG CAT CGCTGG TGGTTTTGCCCAACT YPN_MT0031 31372 - 30704 - | hypothetical protein TERM 31 31262 - 31300 + g 74 -2.5 -5.10029 | overlap 31264 31270 31274 AAAACCGCGCTTTTT GATGGCGG-CAGCCAGGTC GCG GATCTG-CTGTTCGTCATG TTTTTTGGCGTTCAT YPN_MT0032 32070 - 31372 - | hypothetical protein TERM 32 32383 - 32369 - g 74 -4.2 -4.8622 | opp_overlap 32373 GTGCGCAAGGAAAAA GCCC CCGCGCT GGGC AAGCCGAACCCGGTA YPN_MT0033 32135 - 33694 + | hypothetical protein YPN_MT0034 33697 - 33975 + | hypothetical protein TERM 33 33984 - 33999 + F 86 -10.4 -3.8186 | opp_overlap 33983 33984 CGATTAAGCATTAAG GGCGTC GCAA GACGCC TTGTTCGTTGAAGTG TERM 34 33999 - 33984 - f 74 -10.4 -2.57136 | opp_overlap 33984, overlap 33983 CGATTAAGCATTAAG GGCGTC GCAA GACGCC TTGTTCGTTGAAGTG YPN_MT0035 34035 - 34457 + | lipoprotein YPN_MT0036 34462 - 34989 + | transcriptional regulator TERM 35 35001 - 35026 + F 100 -10.6 -4.62471 | opp_overlap 35007 TTAAATCTATAAGGG TAATAACCGG CTAAGT CCGGTTATTA TTTTATGTGTCACTT YPN_MT0037 35313 - 35963 + | hypothetical protein TERM 36 36001 - 35968 - T 100 -16.3 -3.3907 | gap 1, opp_overlap 35977 TCAAAGCGTAATTAA TTGAATATAGCGCCCA CTA TGGGCGCT-TATTCAA AAGATCTTAAGTCTG TERM 37 35977 - 35993 + T 100 -13.7 -3.62224 | opp_overlap 35968 AATTAATTGAATATA GCGCCCA CTA TGGGCGC TTATTCAAAAGATCT TERM 38 36305 - 36279 - T 100 -9.4 -5.69262 | opp_overlap 36284, overlap 36282 36284 TTAGAAAAATAAAAA CAATAGCGCCCA CTA TGGGCGCTTTTT TCGTTTCAAGATCCG TERM 39 36302 - 36282 - T 100 -11.1 -4.855 | opp_overlap 36284, overlap 36279 36284 GAAAAATAAAAACAA TAGCGCCCA CTA TGGGCGCTT TTTTCGTTTCAAGAT TERM 40 36300 - 36284 - T 100 -13.7 -3.97385 | opp_overlap 36284, overlap 36282 36279 AAAATAAAAACAATA GCGCCCA CTA TGGGCGC TTTTTTCGTTTCAAG TERM 41 36284 - 36300 + T 100 -13.7 -5.37593 | opp_overlap 36284 36282 36279 AAAATAAAAACAATA GCGCCCA CTA TGGGCGC TTTTTTCGTTTCAAG TERM 42 36348 - 36331 - T 100 -12.7 -3.4678 | opp_overlap 36331 ATCCGCACACCATAA CGCGCCA TTGT TGGCGCG TTTTTTATTGTCTGA TERM 43 36331 - 36348 + T 100 -12.7 -5.60689 | opp_overlap 36331 ATCCGCACACCATAA CGCGCCA TTGT TGGCGCG TTTTTTATTGTCTGA TERM 44 36910 - 36886 - T 75 -7.1 -4.25283 | opp_overlap 36886, overlap 36890 ACTGGTGGACGAAAA GAAAGGGGC GTTTCCA GCCCCTCCC CTCTTACTTGCCAGC TERM 45 36906 - 36890 - T 77 -6.5 -4.72007 | opp_overlap 36886, overlap 36886 GTGGACGAAAAGAAA GGGGC GTTTCCA GCCCC TCCCCTCTTACTTGC YPN_MT0038 37396 - 36914 - | hypothetical protein TERM 46 37593 - 37574 - R 79 -10.7 -3.06302 | opp_overlap 37571 37574, overlap 37563 37560 37561 37558 AGGATGGCCATTTAA GGCCACC AGCATG GGTGGCC TCGTTCTCTTAGTGG TERM 47 37574 - 37593 + r 79 -10.7 -2.95751 | opp_overlap 37563 37560 37561 37558 37574, overlap 37571 AGGATGGCCATTTAA GGCCACC AGCATG GGTGGCC TCGTTCTCTTAGTGG YPN_MT0039 37883 - 37602 - | hypothetical protein TERM 48 38005 - 37981 - R 93 -9.9 -4.30987 | opp_overlap 37984, overlap 37983 37984 ATCGGGTATAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 49 38003 - 37983 - R 100 -12.5 -3.75817 | opp_overlap 37984, overlap 37981 37984 CGGGTATAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 50 38002 - 37984 - R 100 -16 -2.85008 | opp_overlap 37984, overlap 37983 37981 GGGTATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 51 37984 - 38002 + r 100 -16 -4.8048 | opp_overlap 37984 37983 37981 GGGTATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_MT0040 38541 - 38083 - | transposase TERM 52 38654 - 38672 + r 100 -16 -4.36914 | opp_overlap 38654 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 53 38672 - 38654 - R 100 -16 -3.07307 | opp_overlap 38654 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 54 38691 - 38710 + r 93 -12.2 -3.71998 | opp_overlap 38691 TCTGGGCACAAAAAA GGCCACTA AATA TAGTGGCC TTATGTTAATAGATA TERM 55 38710 - 38691 - R 100 -12.2 -5.24129 | opp_overlap 38691 TCTGGGCACAAAAAA GGCCACTA AATA TAGTGGCC TTATGTTAATAGATA YPN_MT0041 39319 - 38750 - | hypothetical protein YPN_MT0095 40078 - 39332 - | hypothetical protein TERM 56 39946 - 39956 + g 70 -3.2 -4.77757 | ATACCGAGAACTGGT CGTC ATT GATG TTTTCGTTTTTCCAC YPN_MT0042 41984 - 40068 - | exonuclease subunit 2 YPN_MT0043 43299 - 42214 - | exonuclease subunit 1 YPN_MT0044 43715 - 44737 + | periplasmic protein TERM 57 44746 - 44774 + T 82 -10.3 -3.65902 | opp_overlap 44748, overlap 44748 CAAATAGTCTCATTA CAGGCGGTTGTCT ACT GGACAATCGCCTA TTTACCTGGAGTGCA TERM 58 44748 - 44772 + T 100 -12.9 -3.41073 | opp_overlap 44748, overlap 44746 AATAGTCTCATTACA GGCGGTTGTCT ACT GGACAATCGCC TATTTACCTGGAGTG TERM 59 44772 - 44748 - T 72 -10 -2.79679 | opp_overlap 44748 44746 AATAGTCTCATTACA GGCGGTTGTC TACTG GACAATCGCC TATTTACCTGGAGTG YPN_MT0045 45741 - 45097 - | hypothetical protein TERM 60 46024 - 46003 - H 74 -6.5 -4.44797 | opp_overlap 46018 CTATGAAGAGCAAAA CAACCTCTC TGGA GAGTGGTCG GTATCCACTGTAGTG TERM 61 46401 - 46389 - H 70 -2.6 -4.96762 | opp_overlap 46398, overlap 46397 TAGAGAGTAGAAAAA CCAC TATAG GCGG TAGGATAACCGCTGT YPN_MT0046 46486 - 47550 + | replication protein A TERM 62 47575 - 47599 + T 100 -8.6 -5.05113 | opp_overlap 47575 TGTAGAGAGTAGAAA GGCTCACTAT CCGCT GTAGTGGGCC TTTTGTTTATCTGAA TERM 63 47740 - 47752 + T 70 -7.7 -3.68073 | GCTGCGAGGTTAGTG GTCAC TGG GTGAC TTGTTAAATCCACTC TERM 64 48027 - 48044 + T 74 -6.9 -4.2828 | CACTACAGTGGATAC CGGATGC CACG GCAGCCG TTTTACTCACTACAG YPN_MT0097 48334 - 48119 - | hypothetical protein YPN_MT0047 48666 - 48331 - | hypothetical protein YPN_MT0098 48842 - 48663 - | hypothetical protein YPN_MT0048 49158 - 48883 - | hypothetical protein YPN_MT0049 49636 - 49226 - | hypothetical protein YPN_MT0050 49991 - 49620 - | hypothetical protein TERM 65 50019 - 50031 + r 75 -5.5 -4.8622 | TCTTTCAGAAATTGC GTGGC GTT GTCAC TTTTTACTTCAACGG TERM 66 50108 - 50127 + r 74 -9.2 -3.24232 | opp_overlap 50109, overlap 50106 50104 50109 ATACGGAAATAAAAA AGGCGTCC AAGT GGACGCCG TATCTTTGAAAAGGG TERM 67 50109 - 50126 + r 86 -12.7 -2.54325 | opp_overlap 50109, overlap 50108 50106 50104 TACGGAAATAAAAAA GGCGTCC AAGT GGACGCC GTATCTTTGAAAAGG TERM 68 50126 - 50109 - R 100 -12.7 -5.65927 | opp_overlap 50109 50108 50106 50104 TACGGAAATAAAAAA GGCGTCC AAGT GGACGCC GTATCTTTGAAAAGG YPN_MT0051 50975 - 50145 - | lipoprotein YPN_MT0099 51179 - 50979 - | hypothetical protein TERM 69 51247 - 51263 + r 100 -15.1 -3.52539 | opp_overlap 51247, overlap 51236 TTTCAAGTATAAAAA GGCGCCC AAT GGGCGCC TTGTGATTACGCTTC TERM 70 51263 - 51247 - R 100 -15.1 -4.98255 | opp_overlap 51247 51236 TTTCAAGTATAAAAA GGCGCCC AAT GGGCGCC TTGTGATTACGCTTC YPN_MT0052 52346 - 51270 - | recombinase TERM 71 52285 - 52300 + g 80 -3.2 -5.26119 | GAGACCTTCTGAATC TCGTCA TTGC TGCCGA TTTTCTTTTTCAGCG YPN_MT0053 52615 - 52349 - | hypothetical protein YPN_MT0054 53559 - 52615 - | exonuclease TERM 72 53603 - 53580 - R 100 -15.4 -4.57073 | opp_overlap 53584 CACTCCTTCCAAAAA GTAAGGCGTC CGTA GACGCCTTAC TGGTCACGTTATGGG TERM 73 53584 - 53599 + r 77 -10.4 -3.22223 | opp_overlap 53580 CCTTCCAAAAAGTAA GGCGTC CGTA GACGCC TTACTGGTCACGTTA YPN_MT0055 54648 - 53620 - | hypothetical protein YPN_MT0056 55241 - 54768 - | hypothetical protein TERM 74 55679 - 55696 + H 83 -9.1 -4.1552 | overlap 55695 AAAAATAGTAGTTAG TGGCGGT TTTG GCCGCCA TTTGTTCCAAAGGTA YPN_MT0057 55744 - 56307 + | hypothetical protein TERM 75 56306 - 56335 + T 100 -15.1 -3.91473 | opp_overlap 56313, overlap 56313 ACGCCGAATGCGCAT GAAAAAACCCGCC GATT GGCGGGTTTTTGC TTTATGCGACTTTCT TERM 76 56313 - 56328 + T 100 -11.8 -5.04601 | opp_overlap 56313, overlap 56306 ATGCGCATGAAAAAA CCCGCC GATT GGCGGG TTTTTGCTTTATGCG TERM 77 56328 - 56313 - T 100 -11.8 -5.14965 | opp_overlap 56306 56313 ATGCGCATGAAAAAA CCCGCC GATT GGCGGG TTTTTGCTTTATGCG YPN_MT0058 56780 - 56337 - | hypothetical protein YPN_MT0059 60301 - 56777 - | DNA polymerase III TERM 78 60224 - 60239 + g 70 -4.6 -4.67635 | GTAGCCAGCGTCTCT CGCGAT TTTC ACCGCG TTTTCTGCTTTTAGA TERM 79 60256 - 60279 + g 73 -10.4 -3.31144 | gap 1, opp_overlap 60275, overlap 60278 TTTCTGCTTTTAGAG CTGAC-TCTCC CAG GGAGAAGTCAG TTCTGACCATCAGAG YPN_MT0060 61717 - 60482 - | porphyrin biosynthetic protein YPN_MT0061 64180 - 61814 - | porphyrin biosynthetic protein TERM 80 63882 - 63850 - G 80 -4.8 -5.06414 | gap 1, opp_overlap 63871, overlap 63871 63872 TGCGTTCAATAAAAA CGTCTTCCAGCGCGT TCCA AAGC-CCGGTAGACG GAGCCTTTCCTCTCT TERM 81 64233 - 64267 + r 80 -10.1 -3.6682 | overlap 64234 TGTGTGTAATTTTAT GCTGTACGAACAGGT GGCCA AGCTGTTCGTACAGG TTTCAATAGGTAGGA TERM 82 64234 - 64266 + r 93 -13.6 -2.79878 | overlap 64233 GTGTGTAATTTTATG CTGTACGAACAGGT GGCCA AGCTGTTCGTACAG GTTTCAATAGGTAGG YPN_MT0062 64502 - 64290 - | hypothetical protein YPN_MT0064 64765 - 65151 + | hypothetical protein YPN_MT0063 66249 - 65146 - | integrase TERM 83 66378 - 66350 - R 89 -11.9 -3.28712 | opp_overlap 66350 GCCTGTTTTGTACAA TGATTCCATACTT AAT AGGTATGGAATCA TTTTTACCGGCTATG TERM 84 66350 - 66378 + r 100 -14.1 -4.59109 | opp_overlap 66350 GCCTGTTTTGTACAA TGATTCCATACTT AAT AGGTATGGAATCA TTTTTACCGGCTATG TERM 85 66452 - 66440 - R 93 -2.6 -5.99154 | TACCAAATAAAAAAA CCCC GGGGT GAGG GCAAAGGCTGCTTTG TERM 86 66992 - 66963 - R 84 -10.8 -3.58879 | opp_overlap 66964 66968, overlap 66964 66968 GATAATTCATAAATA TTAAAGGAGGGC ATAATA GCCCTCCTTTAT CTATTATCTATATGG TERM 87 66964 - 66991 + r 100 -14.3 -3.26387 | opp_overlap 66963 66964 66968, overlap 66968 ATAATTCATAAATAT TAAAGGAGGGC ATAATA GCCCTCCTTTA TCTATTATCTATATG TERM 88 66991 - 66964 - R 95 -14.3 -2.74604 | opp_overlap 66964 66968, overlap 66963 66968 ATAATTCATAAATAT TAAAGGAGGGC ATAATA GCCCTCCTTTA TCTATTATCTATATG TERM 89 66968 - 66987 + r 100 -10.7 -4.26393 | opp_overlap 66964 66963 66968, overlap 66964 TTCATAAATATTAAA GGAGGGC ATAATA GCCCTCC TTTATCTATTATCTA TERM 90 66987 - 66968 - R 90 -10.7 -4.04579 | opp_overlap 66968 66964, overlap 66964 66963 TTCATAAATATTAAA GGAGGGC ATAATA GCCCTCC TTTATCTATTATCTA YPN_MT0100 67521 - 67009 - | F1 capsule antigen TERM 91 67121 - 67100 - G 79 -6.6 -4.69214 | overlap 67120 GAGCGAACAAAGAAA TCCTGGCT GCCCGT AGCCAAGA CGACGTCATCCCCCA YPN_MT0065 70103 - 67602 - | F1 capsule anchoring protein TERM 92 68813 - 68837 + g 100 -5 -6.32017 | gap 1, opp_overlap 68816 AGTACTTATTATATC GAACGC-GCCA ACGT TGGCCGCTTTC TTTTTTTTGTTTATT TERM 93 69772 - 69782 + g 73 -5.4 -4.67982 | overlap 69778 AAATCAACACATTGC TCTG TAC CAGA TTTTATTAAATCAGG YPN_MT0066 70904 - 70128 - | F1 chaperone protein TERM 94 70657 - 70670 + g 83 -3.1 -5.50774 | GGAGTGACCACGAAA GGATC CTCT GATTC TTTTTCTTTATTCTC YPN_MT0101 71214 - 72137 + | F1 operon positive regulatory protein YPN_MT0067 72957 - 72652 - | C-type natriuretic protein TERM 95 73079 - 73059 - R 93 -12.5 -3.17797 | GCGACAGATACTGAA GCCGAGGGC CAC GCCCCCAGC AAAAGATAATGTGAT YPN_MT0068 73318 - 73103 - | hypothetical protein YPN_MT0069 74515 - 73478 - | DNA ligase TERM 96 74183 - 74206 + g 86 -13.8 -3.62096 | opp_overlap 74175 74176 CTTGAAACCGGAGAG CCGGCCACGC TCCA GCATGGCCGG TTTAAGGTGATCGAG YPN_MT0070 75370 - 74591 - | transposase/IS protein TERM 97 75289 - 75303 + g 77 -11.4 -3.3506 | overlap 75302 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_MT0071 76392 - 75370 - | transposase TERM 98 76414 - 76396 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_MT0072 76759 - 76406 - | hypothetical protein TERM 99 76588 - 76600 + g 79 -9.1 -4.14257 | GTACGGACGTATCGA GTGGC TCG GCCAC TTTGTACTTCTTCAC TERM 100 76699 - 76713 + g 76 -5.6 -4.85599 | overlap 76685 GCGCCTCTTTCTTGG CGTTGG TTC CCATCG TTTTTATGGCATCCA YPN_MT0073 77270 - 76794 - | hypothetical protein TERM 101 77333 - 77319 - R 100 -8.5 -5.0538 | GCGCAGTTTAAAAAA GCCCC ACCAG GGGGC TAAATGGTTTATCGA YPN_MT0074 78146 - 77352 - | hypothetical protein YPN_MT0102 78399 - 79121 + | hypothetical protein TERM 102 80337 - 80358 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_MT0075 79155 - 80363 + | transposase YPN_MT0076 80832 - 81854 + | transposase YPN_MT0077 82340 - 82053 - | hypothetical protein TERM 103 83367 - 83352 - g 70 -8.2 -3.74251 | CACACTTGCATCAAA GGGGGC GCAT ACCCCC GGCGTTGATGGTGTG YPN_MT0078 83230 - 83685 + | hypothetical protein TERM 104 83882 - 83859 - T 71 -8.2 -3.52909 | opp_overlap 83853 83859, overlap 83851 83853 AAACAGAGATGATAA CCATCATGAT TATT AGCATGATGG TTTATGTGATTTATG TERM 105 83859 - 83882 + T 79 -8.2 -4.19123 | opp_overlap 83851 83853 83859, overlap 83853 AAACAGAGATGATAA CCATCATGAT TATT AGCATGATGG TTTATGTGATTTATG YPN_MT0079 85693 - 83930 - | toxin YPN_MT0080 86259 - 85771 - | hypothetical protein YPN_MT0081 86998 - 87273 + | hypothetical protein TERM 106 87267 - 87286 + T 93 -12.2 -3.72241 | opp_overlap 87262 87267 ACATGAGAAAGAGAA CGACTAGC GAGC GCTAGTCG TTTAAATGATTAGTG TERM 107 87286 - 87267 - T 100 -12.2 -3.92485 | opp_overlap 87267, overlap 87262 ACATGAGAAAGAGAA CGACTAGC GAGC GCTAGTCG TTTAAATGATTAGTG YPN_MT0082 88237 - 87296 - | hypothetical protein YPN_MT0083 88923 - 88303 - | resolvase YPN_MT0084 89676 - 89449 - | hypothetical protein YPN_MT0085 89978 - 91183 + | partitioning protein A TERM 108 91711 - 91692 - g 70 -2.8 -4.86731 | TGCGTTGAAAGAAAA TCTCTCTC CGGC GAAAGTGA CACGTGCGTTTCAGG TERM 109 92143 - 92116 - g 73 -5.6 -4.73635 | overlap 92117 92120 GATAAGGCAATAAAA CGTATTCTGGAA AGAC TTCCAGAATCAG GTGAGTAAGGGATAA YPN_MT0086 91180 - 92151 + | partitioning protein B TERM 110 92159 - 92176 + T 91 -7 -5.53079 | opp_overlap 92159 GTGAGTAAGGGATAA GGATGC CGAAGA GCATCC TTTTTTGTATGTTTT YPN_MT0103 92434 - 92288 - | hypothetical protein YPN_MT0087 92536 - 93927 + | DNA-binding protein YPN_MT0104 94397 - 94089 - | hypothetical protein YPN_MT0088 94790 - 95467 + | putative methylase TERM 111 95511 - 95491 - g 72 -4 -4.82667 | gap 1, overlap 95484 95492 95504 GCAGGACACGAAAAA CTCCGCGCA GAAG TG-GCGGAA GTAGCCAACAGCATG YPN_MT0089 95467 - 95688 + | hypothetical protein YPN_MT0090 95699 - 96118 + | hypothetical protein TERM 112 96155 - 96116 - f 73 -2.9 -5.1101 | gap 2, opp_overlap 96127, overlap 96121 96125 GCATTACTGAAAAAA TGAAATCA--ACACGCCGC CCGG GCGGCGTGTACTGACCCCG TTCAGAGGAACCCAT TERM 113 96150 - 96121 - f 82 -8 -4.43669 | gap 2, opp_overlap 96127, overlap 96116 96125 ACTGAAAAAATGAAA TCA--ACACGCCGC CCGG GCGGCGTGTACTGA CCCCGTTCAGAGGAA TERM 114 96144 - 96125 - f 100 -15 -3.7256 | opp_overlap 96127, overlap 96121 96116 AAAAAATGAAATCAA CACGCCGC CCGG GCGGCGTG TACTGACCCCGTTCA TERM 115 96127 - 96142 + F 83 -11.8 -2.78715 | opp_overlap 96125 96121 96116 AAAATGAAATCAACA CGCCGC CCGG GCGGCG TGTACTGACCCCGTT YPN_MT0091 96172 - 96951 + | hypothetical protein TERM 116 96979 - 96958 - f 84 -11.5 -3.09327 | overlap 96961 CCAGTGTAGCGAACA GCAGGGGGC GGCG GCCCCCTGA ATCTACCACGAAGGA TERM 117 96976 - 96961 - f 83 -11.8 -2.75992 | overlap 96958 GTGTAGCGAACAGCA GGGGGC GGCG GCCCCC TGAATCTACCACGAA YPN_MT0092 97350 - 97856 + | antirestriction protein TERM 118 97927 - 97903 - f 100 -11.3 -4.07687 | overlap 97904 AGCCCGCGCGCAAAA CCCTGGCAGGC TCT GCCTGCCGGCG AAGTACGCCGCGCCT TERM 119 97925 - 97904 - f 93 -12.3 -3.04398 | gap 1, overlap 97903 GCCCGCGCGCAAAAC CCTGGCAGGC TCT GCCTGCC-GG CGAAGTACGCCGCGC TERM 120 97933 - 97953 + F 95 -13.9 -2.87564 | opp_overlap 97933 CCTGCCGGCGAAGTA CGCCGCGCC TGC GGCGCCGCG TATCTCCGCCAGTGC TERM 121 97953 - 97933 - f 95 -13.9 -2.70932 | opp_overlap 97933 CCTGCCGGCGAAGTA CGCCGCGCC TGC GGCGCCGCG TATCTCCGCCAGTGC TERM 122 98197 - 98176 - f 89 -11.5 -3.53012 | TGGCGCTGTCGTAAA CGGAGCCGG TAAA CCGTCTCCG CCCTGTCGGGCTTCC TERM 123 98278 - 98300 + F 100 -14.8 -3.61398 | GCGCCGCTCTCACCA GCCCGGCGGT AAT GCTGCCGGGC TTCTTCGGGGCAACG YPN_MT0093 98569 - 98799 + | hypothetical protein TERM 124 98838 - 98807 - f 70 -9.5 -2.82942 | gap 2, overlap 98806 CGCAGTAAGAAAGAG GTGCCCTGCCGGAGC GCGA ACTCCG-CAGGGC-C AGACAATCATCAATA YPN_MT0094 98872 - 100881 + | DNA-binding protein SEQUENCE gi|108793837|ref|NC_008119.1| Yersinia pestis Nepal516 plasmid pPCP, complete sequence (length 10778) YPN_PCP0001 81 - 1103 + | transposase TERM 1 1184 - 1170 - g 77 -11.4 -3.3506 | overlap 1161 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_PCP0002 1103 - 1882 + | transposase/IS protein TERM 2 2350 - 2366 + F 73 -2.9 -5.23016 | TTCGTTGTAACGCGA TTTTCCG TAC CGGGCAA TTTTTTCAGTTGTTT TERM 3 2626 - 2645 + F 89 -3.5 -5.67063 | overlap 2629 ATGTGTCAGACTTCG TTCTCCC CCTTCC GGGTGAA TTTTTTTGTCATCCG TERM 4 2779 - 2747 - f 95 -7.5 -5.58209 | TCAAAGGCAAAAAAA TCCCCCGGAACAGGC GGA ACCCGGACAGGGGGA GAACGAATCGCTAAA YPN_PCP0008 2919 - 3113 + | replication regulatory protein TERM 5 3517 - 3533 + F 73 -2.9 -5.23016 | TTCGTTGTAACGCGA TTTTCCG TAC CGGGCAA TTTTTTCAGTTGTTT TERM 6 3793 - 3812 + F 89 -3.5 -5.67063 | overlap 3796 ATGTGTCAGACTTCG TTCTCCC CCTTCC GGGTGAA TTTTTTTGTCATCCG TERM 7 3946 - 3914 - f 95 -7.5 -5.58209 | TCAAAGGCAAAAAAA TCCCCCGGAACAGGC GGA ACCCGGACAGGGGGA GAACGAATCGCTAAA YPN_PCP0009 4086 - 4280 + | replication regulatory protein TERM 8 4330 - 4285 - T 100 -12.6 -3.55453 | gap 1, overlap 4270 4321 CAGGAACATAACGAA GCTCCCGG-AGACGGTCACAG CTTGT CTGTGAACGGATGCCGGGAGC AGACAAGCCCGTCAG TERM 9 4679 - 4691 + T 100 -10.5 -4.66609 | opp_overlap 4676 4677, overlap 4676 ACCCCAGAAAAGGCC GCGCC GGA GGCGC TTTTTCCATAGGCTC TERM 10 5194 - 5229 + T 100 -14.2 -3.53012 | opp_overlap 5202, overlap 5202 GAAACTTCTAACCTT CGAAAGAACCCACG CCTGAGAA CGTGGGTTTTTTCG TTTACAGGCAGCAGA TERM 11 5202 - 5221 + T 89 -6.4 -5.37593 | opp_overlap 5202, overlap 5194 TAACCTTCGAAAGAA CCCACG CCTGAGAA CGTGGG TTTTTTCGTTTACAG TERM 12 5221 - 5202 - T 74 -7.8 -3.9243 | opp_overlap 5202 5194 TAACCTTCGAAAGAA CCCACGCC TGAG AACGTGGG TTTTTTCGTTTACAG TERM 13 5262 - 5278 + T 71 -6.6 -4.10958 | opp_overlap 5262 5274, overlap 5274 ACGCGCAGAAAAAAA GGATCT CAAGA AGATCC TTTGATCTTTTCTAC TERM 14 5278 - 5262 - T 100 -7.3 -5.61596 | opp_overlap 5262 5274, overlap 5274 ACGCGCAGAAAAAAA GGATCTC AAG AAGATCC TTTGATCTTTTCTAC TERM 15 5969 - 5948 - T 100 -14.5 -3.40163 | opp_overlap 5945 5945 5939 5959 TATCATTAATAGCAA GCCCCTCAT TATT ATGAGGGGC TCATGGTTATTTTAA YPN_PCP0003 7049 - 5976 - | pesticin TERM 16 7131 - 7097 - H 100 -14.6 -6.15259 | TAAGTTAAAAAAAAA TACTGTACATAAAACC ACT GTTTTTATGTACAGTA ATAAAATTACGCCGC YPN_PCP0004 7279 - 7584 + | hypothetical protein TERM 17 8027 - 8003 - g 74 -7.1 -4.37337 | AGAAACAGGAAGAAA GATCAGCCAGT TAG ACTGGAAGATC AAAAATGTCGCTATC TERM 18 8078 - 8125 + G 70 -11.4 -2.64933 | gap 1 GGATCCATACTCATT TCTGACCCTGAATGCCAGGGG GTGGACG TCTCTGGC-TTCCGGGTCAGG TAATATGGATGACTA TERM 19 8373 - 8399 + G 73 -5.8 -4.54449 | opp_overlap 8373 AACTTCCCGAAAGGA GTGCGGGTAATA GGT TATAACCAGCGC TTTTCTATGCCATAT YPN_PCP0005 7827 - 8765 + | outer membrane protease TERM 20 8791 - 8814 + T 100 -16.8 -2.87132 | overlap 8793 TCATATCTCTCTTTT CATCCTCCCC TAGC GGGGAGGATG TCTGTGGAAAGGAGG TERM 21 8793 - 8812 + T 100 -13.6 -2.98823 | overlap 8791 ATATCTCTCTTTTCA TCCTCCCC TAGC GGGGAGGA TGTCTGTGGAAAGGA TERM 22 8849 - 8825 - T 71 -8.6 -3.53444 | overlap 8828 GGATGTCTGTGGAAA GGAGGTTGGT GTTTG ACCAACCTTC AGATGTGTGAAAAAT YPN_PCP0006 9251 - 8952 - | transcriptional regulator TERM 23 9065 - 9075 + g 71 -6.8 -4.2704 | TTAAATCATTTCCGC GCTG CTC CAGC TTTGTTACTGCTGGC YPN_PCP0007 9598 - 9251 - | hypothetical protein SEQUENCE gi|108810166|ref|NC_008149.1| Yersinia pestis Nepal516, complete genome (length 4534590) YPN_0001 710 - 270 - | flavodoxin YPN_0002 1264 - 803 - | DNA-binding transcriptional regulator AsnC YPN_0003 1434 - 2426 + | asparagine synthetase AsnA TERM 1 2454 - 2482 + T 100 -9.5 -4.84529 | ATCCCCCTATGCTAA CTCGCGATAACGG TAT CAGTCATCGCGGG TTTTTAACTTTATCA yieM 3991 - 2525 - | hypothetical protein TERM 2 3614 - 3626 + g 86 -6.9 -5.02476 | overlap 3615 CGTTTGCAGGCTATC TCCGC CTG GCGGG TTTTTTGCCAGGTCT YPN_0005 5548 - 3995 - | regulatory ATPase RavA TERM 3 4921 - 4937 + g 71 -5.1 -4.46212 | overlap 4923 ACTGGTGGAATTCTT CATCAGT GAT ACTGAGG TTTTCTGCTACCGGG TERM 4 4989 - 4999 + g 76 -3.2 -5.18726 | CTGATCAGCAGTGAG CGGA AAT TCTG TTTTTCTTGTACCCG TERM 5 5904 - 5925 + G 73 -3 -4.94902 | ATATTGGCACCAGCC CACTCTAT ACCTTG AGAGAGTG TTTTTCTGGTCATTA TERM 6 7256 - 7223 - g 74 -11.7 -2.72471 | gap 1, opp_overlap 7224 7226, overlap 7222 7226 GCTTCACTAGAGAAG TCACCGCCAGTACGGG TAC CCGGTAC-GGCGGTGT ATATGTCGCGAGCAA TERM 7 7224 - 7255 + G 86 -15.2 -2.98823 | gap 1, opp_overlap 7223 7222 7226, overlap 7226 CTTCACTAGAGAAGT CACCGCCAGTACGGG TAC CCGGTAC-GGCGGTG TATATGTCGCGAGCA TERM 8 7253 - 7226 - g 73 -12 -2.64051 | gap 1, opp_overlap 7224 7226, overlap 7223 7222 TCACTAGAGAAGTCA CCGCCAGTACGGG TAC CCGGTAC-GGCGG TGTATATGTCGCGAG TERM 9 7226 - 7253 + G 77 -12 -3.05022 | gap 1, opp_overlap 7226 7223 7222, overlap 7224 TCACTAGAGAAGTCA CCGCCAGTACGGG TAC CCGGTAC-GGCGG TGTATATGTCGCGAG trkD 5822 - 7690 + | potassium transport protein Kup TERM 10 7723 - 7691 - f 76 -10 -3.29211 | gap 1, opp_overlap 7695, overlap 7686 7679 7695 CAAGTGGAAATTTAA TTG-AGAGGCCGTTA ATCA TAACGGCCTCTTCTA TCATCATTCACACTA TERM 11 7695 - 7718 + F 100 -15.4 -3.57731 | opp_overlap 7695 7691 7686 7679 TGGAAATTTAATTGA GAGGCCGTTA ATCA TAACGGCCTC TTCTATCATCATTCA TERM 12 7718 - 7695 - f 100 -15.4 -2.58812 | opp_overlap 7695, overlap 7691 7686 7679 TGGAAATTTAATTGA GAGGCCGTTA ATCA TAACGGCCTC TTCTATCATCATTCA YPN_0007 7895 - 8314 + | D-ribose pyranase YPN_0008 8365 - 9291 + | ribokinase YPN_0009 9344 - 9514 + | hypothetical protein YPN_0010 10935 - 9511 - | membrane transport protein TERM 13 9709 - 9695 - G 76 -4.2 -4.92783 | overlap 9696 9702 AACCCATCATAAAAA CGCAAC ACA GTCGCA CTGATAGCAATCCCA YPN_0011 11704 - 11015 - | GntR-famly transcriptional regulator TERM 14 11590 - 11607 + g 76 -12.7 -2.6544 | overlap 11589 CCAACTCTATTTCGC CGGGCAG TATA CTGCCCG CTTCATATTCTCCTG TERM 15 14107 - 14070 - H 78 -5.7 -4.7629 | opp_overlap 14070 14064 14073, overlap 14073 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 16 14104 - 14073 - H 78 -7.4 -4.47888 | opp_overlap 14070 14064 14073, overlap 14070 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 17 15563 - 15545 - H 82 -10.3 -3.57798 | overlap 15558 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 18 16023 - 15997 - H 70 -9.4 -2.75844 | opp_overlap 16011 16019, overlap 15996 15999 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 19 16070 - 16059 - H 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 20 17182 - 17192 + H 74 -6.8 -4.27316 | opp_overlap 17182 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 21 17692 - 17660 - H 100 -11.4 -4.50627 | gap 1, opp_overlap 17660 17666, overlap 17666 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 22 17660 - 17692 + H 100 -13.6 -4.62783 | gap 1, opp_overlap 17660 17666, overlap 17666 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 23 17685 - 17666 - H 95 -9.2 -4.50993 | opp_overlap 17666 17660, overlap 17660 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG TERM 24 17666 - 17685 + H 100 -11.4 -4.98672 | opp_overlap 17660 17666, overlap 17660 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG YPN_0012 18389 - 19318 + | homoserine O-succinyltransferase TERM 25 19363 - 19383 + T 70 -7.5 -3.8165 | opp_overlap 19362, overlap 19360 ATAGATGCTAATTAT GGCGGCT GAATCGA GGCCGCC TATTATTTTCTTCCC YPN_0013 19660 - 19511 - | hypothetical protein TERM 26 19570 - 19549 - G 91 -4.5 -5.66989 | opp_overlap 19549 19551, overlap 19551 TAAAGATTAAAAAAA TATTTCCAT AAAA ATGGAAATC GTTTTTGATTTTATG TERM 27 19568 - 19551 - G 76 -7.1 -4.44318 | opp_overlap 19549 19551, overlap 19549 AAGATTAAAAAAATA TTTCCAT AAAA ATGGAAA TCGTTTTTGATTTTA TERM 28 20349 - 20360 + G 74 -7.2 -4.27843 | opp_overlap 20338, overlap 20346 GCAACTGCTGGCGAA GGGC AGCG GCCC TTATTTCTATTTGCC YPN_0014 19738 - 21336 + | malate synthase YPN_0015 21383 - 22690 + | isocitrate lyase TERM 29 22826 - 22800 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 22809, overlap 22801 22816 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 30 22827 - 22801 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 22809, overlap 22800 22816 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 31 22901 - 22924 + F 74 -6.6 -4.4009 | opp_overlap 22901 22900, overlap 22905 CACTTTGTCAATAAC CTCAGCCTGC TTAT GCAGGCTCCG TTTTGTACGGTAGGG TERM 32 22905 - 22920 + F 75 -10.4 -2.80345 | opp_overlap 22901 22900, overlap 22901 TTGTCAATAACCTCA GCCTGC TTAT GCAGGC TCCGTTTTGTACGGT TERM 33 24516 - 24535 + G 73 -2.8 -5.0133 | gap 1 GCCATTTCTTATGCA GTGACCGGA AAG TCAGG-CAC TTTTTTGAGGAGATG aceK 22946 - 24673 + | bifunctional isocitrate dehydrogenase kinase/phosphatase protein YPN_0017 25386 - 24793 - | repressor of aceBA operon TERM 34 25432 - 25417 - H 71 -4.6 -4.71828 | ACCTGACGAACAAAA CCCTGC TGTT GCATGG TCGTGAGTAAACGGT TERM 35 27790 - 27778 - g 74 -4.1 -4.9218 | GATTTAGCAGAAAAA TACCG TGA CAGTA AAAGTGGCGAGGTCG TERM 36 28593 - 28558 - g 87 -7.5 -5.0133 | opp_overlap 28558 CACGCCCGTAAAAAA CCGCGCACCCCGC CGGTCAGTTT GCAGGCTGCACGG AATAACCCAACGGTG metH 25852 - 29547 + | B12-dependent methionine synthase TERM 37 29572 - 29625 + T 80 -8.9 -3.967 | opp_overlap 29581, overlap 29580 29585 AAAGGCGAGATAATG TTGATCTAACGAGGGGGATAAACCG TGAT TGGTTTATCCCCTTCGATATTACAG TTTAATTAATGGATT TERM 38 29580 - 29617 + T 100 -15.7 -3.13784 | opp_overlap 29581, overlap 29572 29585 GATAATGTTGATCTA ACGAGGGGGATAAACCG TGAT TGGTTTATCCCCTTCGA TATTACAGTTTAATT TERM 39 29616 - 29581 - T 100 -16.3 -3.0701 | opp_overlap 29580 29572 29585 ATAATGTTGATCTAA CGAGGGGGATAAACC GTGATT GGTTTATCCCCTTCG ATATTACAGTTTAAT TERM 40 29585 - 29612 + T 100 -15 -3.19293 | opp_overlap 29581, overlap 29580 29572 TGTTGATCTAACGAG GGGGATAAACCG TGAT TGGTTTATCCCC TTCGATATTACAGTT YPN_0019 34550 - 29643 - | hemolysin TERM 41 30146 - 30159 + g 93 -8.1 -5.13722 | TATAGCTGATGGTCT GGACG CTAT CGTCC TTTTCTTTTCCTAAG TERM 42 30456 - 30480 + g 70 -4.4 -4.67982 | gap 1, overlap 30458 AGCGCTGTTCAGGGT CACCT-TATCA CTGT TGATATGGGTG TTTTGTTGCGTCACA TERM 43 31157 - 31190 + g 82 -10.9 -3.9344 | CACTGGTGCTGCCTT GACTATGGCCGCCGC CCAA GCCGCCGCCAAAGTC TTTACTGTTCGGCTT YPN_0020 36119 - 34620 - | hemolysin activator protein TERM 44 34770 - 34781 + gr 76 -5.8 -4.72272 | opp_overlap 34736, overlap 34758 CCCCATAGCGCTGAC CCAC CCCT GTGG TTTTTGCTGGAGACG YPN_0021 36396 - 36049 - | hypothetical protein TERM 45 36630 - 36648 + r 74 -4.5 -4.89393 | opp_overlap 36630, overlap 36640 36641 CGTGTTAGCAGTGAA TGCCCGA TGATC TCAGGCA TTTTTCTGAGGTTTA YPN_0022 38262 - 36877 - | aspartate kinase III TERM 46 38917 - 38898 - g 82 -11.4 -3.75115 | opp_overlap 38898 38896 38913, overlap 38894 TGGTGAGAAAATTAA CCGCACAG AAGA CCGTGCGG TATTGCATATTGCTC pgi 38632 - 40278 + | glucose-6-phosphate isomerase TERM 47 40318 - 40340 + F 100 -10.6 -5.86332 | ATCTGTACTTTATTA GGCCTCTTAT TCT GTAAGGGGCC TTTTTTTTGGCTTGA TERM 48 40489 - 40503 + G 87 -4.2 -5.52384 | overlap 40501 GATTGATTATGTTGG CCGCTA TTT TGGTGG TTTTTTTGGTGAAGG YPN_0024 40413 - 40820 + | phosphate-starvation-inducible protein PsiE TERM 49 40885 - 40865 - T 100 -9.6 -5.24799 | overlap 40866 TGATAAACATAAAAA TGGCGGCC ATTAA GGCCGCCC TAAAGACACAGTACC TERM 50 40884 - 40866 - T 100 -13.1 -3.73253 | overlap 40865 GATAAACATAAAAAT GGCGGCC ATTAA GGCCGCC CTAAAGACACAGTAC malG 41853 - 40963 - | maltose transporter permease malF 43444 - 41867 - | maltose transporter membrane protein TERM 51 43387 - 43401 + g 80 -2.1 -5.42198 | gap 1, overlap 43389 ATTTAAGCGCATCAC TCTGCC ACCA GGC-GA TTTTCTTTTTTCGGC TERM 52 43592 - 43613 + r 95 -11.5 -3.87815 | ATGGCAAATTCTGTC GAGGCACGG CGAA CCGTGCCCC TTTCTCAGAGTAGAC malE 44842 - 43631 - | maltose ABC transporter periplasmic protein TERM 53 44585 - 44547 - G 76 -7.5 -4.29738 | gap 1, opp_overlap 44580 GCATAGCCACCAAAA CGGTCATGGGCCCAGA AGATAATG TCCGGGCC-ATCACCG GTTGCGGCGACTTGT YPN_0028 45430 - 45666 + | hypothetical protein TERM 54 45898 - 45878 - g 70 -11.1 -2.64466 | opp_overlap 45873, overlap 45877 AACGCATGAATGAAG TGCCGCCCT CTG AGCGCGGCA TTGGCATGGTGTTTC YPN_0029 45670 - 46779 + | maltose/maltodextrin transporter ATP-binding protein lamB 46850 - 48121 + | maltoporin TERM 55 48133 - 48152 + F 80 -11.4 -2.66969 | overlap 48130 48130 GTAACAGCGATTCTT CAGCCGTC TGCG GGCGGCTG TACGTTATCTTGATG TERM 56 48550 - 48564 + G 79 -11.4 -3.52906 | opp_overlap 48549, overlap 48547 AGATATTCAACTTAC TGCGGG CAG CCCGCA TATTTCTCAGGGTGA TERM 57 48590 - 48600 + G 79 -8.2 -4.28774 | GGTGAGGTTGAAGGC GCGG TAG CCGC TTTTGCCTTGCCTGC TERM 58 48779 - 48752 - g 74 -4.9 -4.7497 | gap 1, overlap 48772 TTCACCTATGAAAAA GCGGGC-ATCAT GATCA ATGATCGCCTGC AAGGCGTGATGAAAT YPN_0031 48362 - 49273 + | maltose regulon periplasmic protein TERM 59 49306 - 49323 + F 100 -12.7 -5.41359 | TATGGCTGGATGGTT GGTGCGC CTTG GCGCACC TTTTTTCGTTTGGTT YPN_0032 49612 - 50022 + | hypothetical protein TERM 60 50161 - 50132 - T 100 -13.7 -4.7871 | overlap 50133 AACCATCAGTAAAAA CCAGCAGCCAATA ACCT CATTGGCTGCTGA AGAAATACAATATTA TERM 61 50160 - 50133 - T 100 -15 -3.46141 | overlap 50132 ACCATCAGTAAAAAC CAGCAGCCAATA ACCT CATTGGCTGCTG AAGAAATACAATATT YPN_0033 50692 - 50174 - | hypothetical protein TERM 62 51576 - 51549 - g 79 -5.6 -5.01732 | AATGTGGCGAAAAAA GTTCCAGAGCTC AAAA AAATTCTGGAAC TACGGGAAGCGTTAG YPN_0034 51216 - 51713 + | hypothetical protein TERM 63 52465 - 52484 + G 70 -8.6 -3.80094 | AAATGGCGTGCTCTG CGTGAGTC TGAA GATTCACG TTATCTTGGTTTGAC TERM 64 52939 - 52925 - g 74 -8.6 -3.97406 | overlap 52916 52935 GGAAAATGGCAGAAA CCAACT ACA AGTTGG GCACGCAACTGCCGT YPN_0035 51781 - 53262 + | hypothetical protein YPN_0036 53269 - 53709 + | hypothetical protein TERM 65 53915 - 53884 - gT 70 -2.4 -5.00884 | gap 1, opp_overlap 53885 53888, overlap 53885 53888 ACCTGCGTGAAAAAA TCGATGA-TCAATTC CCT GAATTGACTCATGGT TTACTGAATATGTTG TERM 66 54844 - 54862 + GT 77 -11 -2.73735 | overlap 54837 54854 54856 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPN_0038 55610 - 54825 - | transposase for insertion sequence IS1661 YPN_0037 53709 - 54935 + | hypothetical protein YPN_0039 56308 - 55664 - | insertion element IS1661 DNA-binding protein TERM 67 56230 - 56184 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 56190, overlap 56189 56210 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCAAAGCGTGGCCC TERM 68 56225 - 56189 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 56190, overlap 56184 56210 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCAAAGCGT TERM 69 56190 - 56225 + g 79 -12.7 -3.05463 | opp_overlap 56189 56184 56210 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCAAAGCGT TERM 70 56220 - 56210 - G 76 -5.4 -4.88736 | opp_overlap 56190, overlap 56189 56184 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAA TERM 71 56259 - 56237 - G 70 -9 -3.59979 | GGGGTTCAGTGCAAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG TERM 72 56515 - 56548 + r 87 -5.5 -5.47399 | opp_overlap 56515 TTTAAGGTCAAAGAC CAATTCAAAATCT AAAGAAGA GGGTTTTGAATTG TTTTTTTGACGTTGA TERM 73 56658 - 56630 - R 93 -11 -4.1899 | gap 1 GGACGCCAGCGAAAA GCGCGCTTGGGCA GGGA TGCCC-ATCGCGC TGGCTCGTCAGCCCG TERM 74 56725 - 56750 + r 100 -16.2 -2.52543 | GCGCAAGCCGCAGGT GCAGGAGGGC CGGCTA GCCCTCCTGC TCGGTTGAGGCGACT YPN_0040 59557 - 56921 - | phosphoenolpyruvate carboxylase YPN_0041 61094 - 59931 - | acetylornithine deacetylase argC 61345 - 62349 + | N-acetyl-gamma-glutamyl-phosphate reductase YPN_0043 62515 - 63291 + | acetylglutamate kinase TERM 75 64326 - 64312 - g 90 -5.7 -5.24796 | overlap 64314 64316 GCCACAGAAGAAAAA TCCAG ATGCG CTGGA GCTCATCCGTGGTAA TERM 76 64785 - 64769 - g 70 -9.3 -3.5594 | opp_overlap 64760 64764 64780, overlap 64770 AAGCGAGTGGCCAAA GGCGGCG TTT CGCCGCA GCAGGTTGCATCGGC TERM 77 64784 - 64770 - g 77 -12.8 -2.73243 | opp_overlap 64760 64764 64780, overlap 64769 AGCGAGTGGCCAAAG GCGGCG TTT CGCCGC AGCAGGTTGCATCGG YPN_0044 63458 - 64831 + | argininosuccinate lyase TERM 78 64889 - 64856 - f 76 -10.1 -3.33261 | opp_overlap 64860 TTTTAATCTTGAGAA CGGGGCGGGCCGCTA ATTG CAGCGGCCCGCTTTG CATTAACAGTTACTA TERM 79 64860 - 64885 + F 100 -17.6 -3.75897 | opp_overlap 64856 AATCTTGAGAACGGG GCGGGCCGCT AATTGC AGCGGCCCGC TTTGCATTAACAGTT TERM 80 65481 - 65461 - g 70 -2 -4.92669 | opp_overlap 65480, overlap 65480 GAGATAAAAAAACAA TAATTTCA GTGAA TAAAATTA CAACTTGTATATTAT TERM 81 67224 - 67234 + G 71 -6.8 -4.25256 | GACGATCACTTTGCC GCGA AGG TCGC TTATTTTGATACCCG YPN_0045 65430 - 67922 + | TonB dependent receptor protein TERM 82 68017 - 67984 - f 100 -18.3 -4.26351 | overlap 67985 CAGCAAGTGAATAAA TCCCGCATCATTGAC GGCA GTCAATGATGCGGGT GAGAGAACACAGCTA TERM 83 68016 - 67985 - f 100 -21.8 -3.15087 | overlap 67984 AGCAAGTGAATAAAT CCCGCATCATTGAC GGCA GTCAATGATGCGGG TGAGAGAACACAGCT YPN_0046 68144 - 68761 + | hemophore HasA TERM 84 68792 - 68768 - f 100 -13.7 -5.06414 | opp_overlap 68766 68787 GCCGCTTAAGAAAAA CAGCCAGAAAA TAA CTTTCTGGCTG AGTCATTGATACCAC YPN_0047 68918 - 70735 + | ABC transporter protein YPN_0048 70811 - 72139 + | HlyD family secretion protein YPN_0049 72204 - 73007 + | membrane protein TERM 85 73104 - 73088 - T 100 -10.8 -4.7254 | opp_overlap 73088 ACGGGGGATTAAAAA CCGGGC GCCGT GCCCGG TTTGAACCGCCTGAG TERM 86 73088 - 73104 + T 89 -11.5 -3.53811 | opp_overlap 73088 ACGGGGGATTAAAAA CCGGGCG CCG TGCCCGG TTTGAACCGCCTGAG YPN_0050 74586 - 73123 - | dihydrolipoamide dehydrogenase TERM 87 74061 - 74043 - G 79 -7.4 -4.56597 | CGCCTGGGCCAAAAA CTGCCACA GAT TCTGGCAG ATCGTCCCAATTAAA TERM 88 74627 - 74610 - R 100 -11.3 -6.10295 | opp_overlap 74608 CTAACAGAAAAAAAA GGTAGGC CGGA GCCTACC AAGTTACTTCCTATT YPN_0051 75412 - 74681 - | peroxiredoxin/glutaredoxin family protein TERM 89 74973 - 74963 - G 70 -8.2 -3.65693 | opp_overlap 74962 74959 74963 ATCAGATACTTCAAA CGGG TCG CCCG GTTTGTTTGGCTCGA TERM 90 74977 - 74994 + g 84 -4.2 -5.24129 | overlap 74959 ACGGGTCGCCCGGTT TGTTTG GCTCGA CAAACA TTTTTTCTACCACGC YPN_0052 75559 - 76476 + | DNA-binding transcriptional regulator OxyR YPN_0053 77859 - 76459 - | soluble pyridine nucleotide transhydrogenase YPN_0054 78077 - 78712 + | DNA-binding transcriptional repressor FabR YPN_0055 78725 - 79132 + | hypothetical protein TERM 91 79218 - 79236 + T 100 -10.3 -4.83243 | opp_overlap 79218, overlap 79203 CGTCTTGCCAACTAA GGGCAAC ATGTC GTTGCCC TTTCTTTTATCTGCG TERM 92 79236 - 79218 - T 81 -11 -3.33696 | opp_overlap 79203 79218 CGTCTTGCCAACTAA GGGCAACA TGT CGTTGCCC TTTCTTTTATCTGCG TERM 93 79264 - 79274 + T 76 -6.8 -4.57569 | GCGGTATGAATTATT CGTC AGT GACG TTTTTCCAGCAGTAC YPN_0056 80369 - 79266 - | tRNA (uracil-5-)-methyltransferase btuB 80831 - 82726 + | vitamin B12/cobalamin outer membrane transporter TERM 94 82823 - 82797 - gf 100 -13.8 -3.14132 | opp_overlap 82794 82791 CTGTCTGTCTATCAA GAGATTCGGCAA CTG TTGCCGGATCTC CACTATATATATGCT TERM 95 83287 - 83299 + GF 72 -7.7 -3.76775 | opp_overlap 83286 83283 CGGATACTATAGTAT TGGGT TGC ACCCA TTTCCCTCTATTAAC YPN_0058 82671 - 83534 + | glutamate racemase TERM 96 85834 - 85797 - f 78 -5.7 -4.7629 | opp_overlap 85797 85791 85800, overlap 85800 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 97 85831 - 85800 - f 78 -7.4 -4.47888 | opp_overlap 85800 85797 85791, overlap 85797 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 98 87290 - 87272 - f 82 -10.3 -3.57798 | overlap 87285 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 99 87750 - 87724 - f 70 -9.4 -2.75844 | opp_overlap 87738 87746, overlap 87723 87726 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 100 87797 - 87786 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 101 88909 - 88919 + F 74 -6.8 -4.27316 | opp_overlap 88909 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 102 89444 - 89425 - f 100 -9.2 -5.36441 | opp_overlap 89425 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 103 89425 - 89444 + F 100 -11.4 -5.80951 | opp_overlap 89425 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 104 89522 - 89538 + F 73 -3.8 -5.02201 | TCGCTTTCTCTTTCC TCATTA TAATT TAATGA TTTTTATAATATTTT YPN_0059 90393 - 91349 + | periplasmic protein precursor TERM 105 91354 - 91378 + F 87 -8.4 -4.4195 | overlap 91357 TTGGTTATTGATTCA GATGGCGGGG CTTGC CCCCGCCTGC TTTTATCACCTGTAT TERM 106 91357 - 91375 + F 95 -13.1 -3.18044 | overlap 91354 GTTATTGATTCAGAT GGCGGGG CTTGC CCCCGCC TGCTTTTATCACCTG YPN_0060 91435 - 92925 + | sugar transport system ATP-binding protein YPN_0061 92937 - 93956 + | sugar transport system permease YPN_0062 93956 - 94948 + | inner membrane ABC transporter permease protein YjfF YPN_0063 95816 - 94935 - | transcriptional regulator HdfR TERM 107 96105 - 96119 + G 72 -10 -3.38046 | opp_overlap 96103 96105, overlap 96103 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA TERM 108 96119 - 96105 - g 72 -10 -3.45087 | opp_overlap 96105 96103, overlap 96103 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA YPN_0064 95851 - 96273 + | hypothetical protein TERM 109 96510 - 96525 + T 100 -11.8 -4.20516 | GTTAGTTGAGTATTA GGGGGC TTTG GCCCCC TTTGTTACATCAGGC YPN_0065 98053 - 96530 - | magnesium chelatase family protein TERM 110 98584 - 98561 - H 100 -13.8 -3.69069 | opp_overlap 98561 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTATTGGCACG TERM 111 98561 - 98584 + H 100 -13.8 -5.4505 | opp_overlap 98561 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTATTGGCACG TERM 112 99701 - 99675 - g 74 -11.6 -3.14132 | opp_overlap 99672 TCGTGGCGTGATGAA GTGATGGCGCTG AAA CAGCAACATCAC TGGCGTTATGACCAC YPN_0066 98676 - 100322 + | acetolactate synthase 2 catalytic subunit ilvM 100319 - 100576 + | acetolactate synthase 2 regulatory subunit TERM 113 101012 - 100998 - g 70 -10 -3.28924 | opp_overlap 100997 100998 TATCTGGGTGCAGAA GCCTTG GAG CAAGGC ATTGATGCTATGGTG YPN_0068 100599 - 101525 + | branched-chain amino acid aminotransferase YPN_0069 101836 - 103686 + | dihydroxy-acid dehydratase YPN_0070 103692 - 105236 + | threonine dehydratase YPN_0071 105831 - 105367 - | membrane protein TERM 114 105661 - 105685 + g 79 -9.4 -4.25056 | overlap 105662 TAGCCACCAGTTTAT TTTCCCTTTC TCAGT GAAAGGGAAG TTTCTTACTAAAATA TERM 115 105662 - 105684 + g 71 -10.7 -3.14552 | overlap 105661 AGCCACCAGTTTATT TTCCCTTTC TCAGT GAAAGGGAA GTTTCTTACTAAAAT YPN_0072 106372 - 105911 - | membrane protein YPN_0073 106913 - 106452 - | membrane protein YPN_0074 107775 - 106897 - | hypothetical protein TERM 116 107629 - 107642 + g 73 -5.3 -4.74453 | GCTTGAAATATTATG CAGAT TAAA ATCTG TTTTTAACTGTGTTG TERM 117 108099 - 108065 - H 70 -7.9 -3.64831 | opp_overlap 108062, overlap 108062 108066 CTAATAATGACATAA GCCGGATAAGCTTAT TATTG ACACGCTTATCCGGT TAACACCGCCTAAAT TERM 118 108098 - 108066 - H 81 -11.4 -2.78176 | opp_overlap 108062, overlap 108065 108062 TAATAATGACATAAG CCGGATAAGCTTAT TATTG ACACGCTTATCCGG TTAACACCGCCTAAA YPN_0075 108423 - 108632 + | hypothetical protein YPN_0076 109568 - 108687 - | DNA-binding transcriptional regulator IlvY TERM 119 108717 - 108731 + g 100 -11.4 -5.08824 | opp_overlap 108717 108705 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 120 108731 - 108717 - G 77 -11.4 -3.41982 | opp_overlap 108717, overlap 108705 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 121 109460 - 109428 - G 79 -7.6 -4.58395 | GTTATCGCGTAAAAA CAGGGGCTGGCCGA TAGTC TCTTCCAGCCGCTG GATCTGGCGGGAAAG TERM 122 109620 - 109645 + H 72 -9.9 -2.87529 | gap 1, opp_overlap 109618, overlap 109619 TGCATAAGAAATCGG GTG-TATTGCAG AAA CTGCAATATCAC ATTGTTAATATATCA YPN_0077 109854 - 111332 + | ketol-acid reductoisomerase TERM 123 111364 - 111386 + F 100 -9.8 -5.36441 | GTGATTTTATATTGA GCCTCCCTGT AAA AAAGGGGGGC TTTTTTATGTGCACC TERM 124 111448 - 111436 - f 75 -9.1 -3.58533 | GTAGAATTGCCGAAA CCCCA GGG TGGGG TAAGAATATTAGGTA YPN_0078 111513 - 111713 + | hypothetical protein YPN_0079 111909 - 113351 + | colicin TERM 125 113529 - 113519 - g 76 -6.8 -4.43909 | AGGCTAATAAAAGAA GCCA AGT TGGC TGAGGATGAAAAGGG YPN_0080 113351 - 113614 + | hypothetical protein TERM 126 113636 - 113664 + F 82 -3.2 -5.47964 | gap 1 ATATGCTTCAGTTAA CGTCCAGTCAATG AGTG TATTG-TTGGGCG TTTTTCTTATTTTAT YPN_0081 114120 - 114377 + | colicin immunity protein TERM 127 114397 - 114410 + T 78 -5.9 -4.81163 | opp_overlap 114392 114397, overlap 114392 AATATATAATCCAAA CCGCC TTCT GGTGG TTTTGTTAATATTTA TERM 128 114793 - 114814 + T 72 -9.5 -3.14564 | ATGCTGCCCGCAGGG TGAGTCTCA GGGG TGAGGCTCA TTAATCCCCAGGTGC YPN_0082 114988 - 114830 - | hypothetical protein YPN_0083 115830 - 115012 - | chaperone protein TERM 129 115479 - 115450 - GR 80 -11.5 -2.6062 | gap 1, opp_overlap 115453, overlap 115449 115447 115453 CCCACCAGATAAGAT CAACCGCAGGCTAC GCT GT-GCCTGAGGTTG TAACCGGAATACCGG YPN_0084 117175 - 115796 - | hypothetical protein TERM 130 115842 - 115860 + gr 71 -5.9 -4.33004 | GCATTCACTGCTCCG GCGGTCA CTGTT TGCCCGC TTATTTTGCTTAACT TERM 131 116415 - 116434 + gr 83 -10.7 -3.54129 | TCAGTACCCTCAATC GGGCCAG TAATTC CTGGCCC TTTAAACGCGATATA YPN_0085 119807 - 117180 - | outer membrane usher protein YPN_0086 120566 - 119835 - | fimbrial chaperone YPN_0087 121160 - 120630 - | fimbrial protein TERM 132 121241 - 121187 - R 82 -10.2 -3.71794 | opp_overlap 121196, overlap 121196 ATGTAATCATTGAAA TGGAGTTAATTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAATTTGATTGA GTGAATATATATTCC TERM 133 121232 - 121196 - R 100 -24.1 -3.11732 | opp_overlap 121196, overlap 121187 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 134 121196 - 121232 + r 100 -24.1 -3.93556 | opp_overlap 121196 121187 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 135 121282 - 121317 + r 100 -6.4 -6.06529 | gap 1, opp_overlap 121291, overlap 121283 GTTTTTATTATTCGT C-TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGATG TTTTTTTTCTGTGTA TERM 136 121283 - 121315 + r 100 -10.1 -4.65669 | opp_overlap 121291, overlap 121282 TTTTTATTATTCGTC TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGA TGTTTTTTTTCTGTG TERM 137 121996 - 121975 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_0088 123178 - 121970 - | transposase for the IS285 insertion element YPN_0089 124066 - 123275 - | hypothetical protein TERM 138 124263 - 124304 + r 71 -9.6 -3.06796 | gap 1, opp_overlap 124264 124266 124271, overlap 124271 GTATGACGAGTATAA ACATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGGA TTAGCTGCGGTACAA TERM 139 124303 - 124264 - R 100 -13.1 -4.00038 | gap 1, opp_overlap 124263 124271, overlap 124266 124271 TATGACGAGTATAAA CATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGG ATTAGCTGCGGTACA TERM 140 124301 - 124266 - R 100 -14.3 -3.58864 | gap 1, opp_overlap 124263 124271, overlap 124264 124271 TGACGAGTATAAACA TGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCA GGATTAGCTGCGGTA TERM 141 124296 - 124271 - R 77 -8.4 -4.05181 | gap 1, opp_overlap 124271 124263, overlap 124266 124264 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG TERM 142 124271 - 124296 + r 73 -8.4 -3.61268 | gap 1, opp_overlap 124266 124264 124271, overlap 124263 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG YPN_0090 124586 - 124305 - | peptidyl-prolyl cis-trans isomerase C TERM 143 125678 - 125693 + G 78 -2.6 -5.26316 | opp_overlap 125689 GCCAACAACCCACAT GTTTTT GAAA AGAAAC TTTTTTCTGAACTGA TERM 144 126656 - 126672 + G 79 -7.9 -4.47328 | TACGGCGAGTTGATT CGGCCAG AAC CTAGCCG TTTTCTGATGGAGTT TERM 145 126772 - 126755 - g 100 -11.3 -4.66609 | opp_overlap 126754 126753 GAGCGTATGCAAAAA GGCCAGA GTCA TCTGGCC AATCTTCGTGCTCAG YPN_0091 124790 - 126811 + | ATP-dependent DNA helicase Rep TERM 146 126891 - 126868 - T 84 -11.1 -3.69702 | overlap 126871 CAGTAGTGAAGATAA TAACGGGCA GTCTAT TGCCCGTTA GCCATGCATTAAGGC TERM 147 126888 - 126871 - T 77 -8.4 -3.97511 | overlap 126868 TAGTGAAGATAATAA CGGGCA GTCTAT TGCCCG TTAGCCATGCATTAA YPN_0092 128037 - 126979 - | guanosine-5'-triphosphate,3'-diphosphate diphosphatase YPN_0093 128474 - 127968 - | hypothetical protein YPN_0094 129764 - 128478 - | ATP-dependent RNA helicase RhlB TERM 148 129016 - 129034 + g 86 -3 -5.59655 | opp_overlap 129018, overlap 129017 129018 CATTCTTCTTCAATT AACGTCTG TAA CAGACGCA TTTTTTCTTCATTTG TERM 149 129032 - 129018 - G 70 -10 -3.33696 | opp_overlap 129017 129016 129018 TTCTTCTTCAATTAA CGTCTG TAA CAGACG CATTTTTTCTTCATT TERM 150 129075 - 129085 + g 78 -2.4 -5.25803 | CAGCTCTTCTTTGAT GCGG TGA CCGG TTTTTTGTAACGGTT YPN_0095 129883 - 130209 + | thioredoxin 1 TERM 151 130992 - 131014 + G 74 -6.9 -4.28369 | GTTGCCGGTAAGATT CGTCCGCCT AAAGA AGGCGAGCG TTATTTTGCATTGTT TERM 152 131277 - 131295 + G 74 -6.8 -4.35461 | overlap 131279 GCGACCAGCATTGCT TACAATCA CCC TGATTGTG TTTTGATGGTATTGC rho 130689 - 131948 + | transcription termination factor Rho TERM 153 132118 - 132100 - f 100 -11.7 -4.23892 | opp_overlap 132100 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTTTGGA TERM 154 132100 - 132118 + F 100 -11.7 -5.46698 | opp_overlap 132100 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTTTGGA YPN_0097 132498 - 133580 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YPN_0098 133616 - 134677 + | lipopolysaccharide biosynthesis protein WzzE YPN_0099 134904 - 136088 + | UDP-N-acetylglucosamine 2-epimerase TERM 155 136132 - 136146 + G 74 -7 -4.42238 | overlap 136130 TGGGTATATTGGTCT GCCGAC CGC GGCGGC TTTTGCTTCGCGTAA wecC 136085 - 137347 + | UDP-N-acetyl-D-mannosamine dehydrogenase YPN_0101 137338 - 138411 + | dTDP-D-glucose-4,6-dehydratase TERM 156 138566 - 138525 - f 77 -10.9 -2.74144 | opp_overlap 138525, overlap 138524 138528 CCTGCACCTTGAAAT CTATAGTGTCTATCGTTGG GCGA CCTACGAGAGACACCAAAG TCGATTAATCATCGG TERM 157 138563 - 138528 - f 76 -11.2 -2.64803 | opp_overlap 138525, overlap 138525 138524 GCACCTTGAAATCTA TAGTGTCTATCGTTGG GCGA CCTACGAGAGACACCA AAGTCGATTAATCAT TERM 158 139087 - 139069 - gf 89 -10.2 -3.93061 | opp_overlap 139076 139078 139078 AGTCCAAAACTGAAA GCTGTCGC CGC GCGTCAGC AGGGCGCGACTGTTT YPN_0102 138655 - 139587 + | glucose-1-phosphate thymidylyltransferase TERM 159 140038 - 140059 + GF 72 -7.2 -3.9279 | overlap 140053 TTTATTGGTGCTCGA CCCTACGG ATCAAC CCGTCGGG TTTGTGACGTTGCGT YPN_0103 139538 - 140302 + | TDP-fucosamine acetyltransferase YPN_0104 140304 - 141434 + | TDP-4-oxo-6-deoxy-D-glucose transaminase TERM 160 141470 - 141499 + G 83 -13.7 -3.20227 | overlap 141469 CGATTTGGACTGCCT GCTCTACGCTAAT CAAG ATTGGCGTAGGGC TATTGGTGGTTAAAC YPN_0105 141436 - 142692 + | lipopolysaccharide biosynthesis protein TERM 161 142931 - 142956 + G 82 -7.5 -4.64861 | gap 1, overlap 142942 GAGGCGGTTATTGCC CGTGCACAGGCG GAT CGCA-GTGCGCG TTTCTTTTGGCACGG YPN_0106 142715 - 143800 + | 4-alpha-L-fucosyltransferase YPN_0107 143797 - 145161 + | putative entero common antigen polymerase TERM 162 145863 - 145877 + G 76 -7.2 -4.4078 | overlap 145859 CGCATTCGTCGTCAG CTTAAG CTG CTTAAG TTTGTTGGTTATTAT YPN_0108 145170 - 145910 + | putative UDP-N-acetyl-D-mannosaminuronic acid transferase TERM 163 147005 - 147017 + G 89 -10.5 -4.41348 | GCTTCGATAACCTGA CCGCC CAT GGCGG TTTCTTTGCCGGGGG YPN_0109 146434 - 147825 + | putative transport protein YifK TERM 164 148346 - 148319 - f 73 -7.2 -4.08706 | TTCGCACCACACAAA CATGTAGATATT TATT AATATTTACATG GACATAGGTCGAGAG TERM 165 148492 - 148478 - f 100 -12.8 -4.33248 | opp_overlap 148478 CAATTTCAGAAGAAA CCCCGC AAT GCGGGG TTTTTTTTCGCCTGA TERM 166 148478 - 148492 + F 100 -12.8 -5.78622 | opp_overlap 148478 CAATTTCAGAAGAAA CCCCGC AAT GCGGGG TTTTTTTTCGCCTGA TERM 167 149159 - 149180 + F 100 -10.2 -5.60993 | opp_overlap 149161 CCTGAAAATTTTAGA CACTTGCC CTTTTC GGCAAGTG TTTTTTTGTGCCCAG TERM 168 149200 - 149218 + F 100 -16 -3.07307 | opp_overlap 149200 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 169 149218 - 149200 - f 100 -16 -4.36914 | opp_overlap 149200 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0110 149331 - 149789 + | transposase for the IS1541 insertion element TERM 170 149863 - 149895 + T 100 -11.3 -4.19704 | opp_overlap 149870, overlap 149867 149869 149870 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTGGGTGCGCTTC TERM 171 149867 - 149891 + T 100 -9.9 -4.68908 | opp_overlap 149870, overlap 149863 149869 149870 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTGGGTGCG TERM 172 149869 - 149889 + T 100 -12.5 -3.95475 | opp_overlap 149870, overlap 149867 149863 149870 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTGGGTG TERM 173 149870 - 149888 + T 100 -16 -2.962 | opp_overlap 149870, overlap 149869 149867 149863 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGGT TERM 174 149888 - 149870 - T 100 -16 -4.8048 | opp_overlap 149870 149869 149867 149863 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGGT YPN_0111 151202 - 149982 - | putative protoheme IX biogenesis protein YPN_0112 152329 - 151205 - | putative uroporphyrinogen III C-methyltransferase TERM 175 151577 - 151587 + g 74 -6.8 -4.28762 | opp_overlap 151577 GAAATCAGACATAAA GCTG TGC CAGC TTTTGCTCAGATTCT TERM 176 151587 - 151577 - G 71 -6.8 -4.19024 | opp_overlap 151577 GAAATCAGACATAAA GCTG TGC CAGC TTTTGCTCAGATTCT hemD 153109 - 152360 - | uroporphyrinogen-III synthase TERM 177 152593 - 152575 - G 77 -11 -3.43203 | CCACCAGAATATCAA CACCGGCA CGT TGCCAGTG AGCACTTTGTTCGCT hemC 154047 - 153106 - | porphobilinogen deaminase TERM 178 154175 - 154149 - R 78 -2.3 -5.4477 | overlap 154154 154165 AAATGCCTAAAAAAA CAACTGTTGCA ATGAA TACAACGATTG TAATGGATGCATGAC YPN_0115 154477 - 154268 - | hypothetical protein cyaA 154541 - 157093 + | adenylate cyclase TERM 179 157210 - 157236 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 157199, overlap 157205 157211 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 180 157211 - 157237 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 157199, overlap 157205 157210 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 181 157297 - 157317 + T 73 -2.5 -5.14965 | overlap 157298 GGTTTGTCAGCAGTC TGACACG TAAAAAT CGTGTCC TTTTTTGATCCAACT cyaY 157657 - 157337 - | frataxin-like protein YPN_0118 157809 - 157997 + | lipoprotein TERM 182 158606 - 158634 + G 73 -11.7 -2.64616 | overlap 158605 AACCTATATTTTACG CGCCGCAGAGCAT ACG GTGCTGTGTGGCG TGGTGTCGATGGGCA dapF 158181 - 159005 + | diaminopimelate epimerase YPN_0120 159070 - 159774 + | hypothetical protein xerC 159771 - 160682 + | site-specific tyrosine recombinase XerC TERM 183 160766 - 160791 + G 74 -4 -5.0133 | gap 1, overlap 160766 160767 160769 AATCGGCCAGTGATC G-CGCGGACTG AACAG CAGTCTGTGGC TTTTTTACAACAGTA YPN_0122 160682 - 161398 + | flavin mononucleotide phosphatase TERM 184 161567 - 161539 - g 74 -4.3 -4.86621 | opp_overlap 161551, overlap 161542 161544 AGCCTGAATGAAAAA CAACGTGACGCCG TGG CCGCGCCGCGCGG CAACTTGTTGGTACT TERM 185 161564 - 161542 - g 76 -6.8 -4.53777 | opp_overlap 161551, overlap 161539 161544 CTGAATGAAAAACAA CGTGACGCCG TGG CCGCGCCGCG CGGCAACTTGTTGGT TERM 186 161551 - 161571 + G 85 -12.5 -3.75024 | opp_overlap 161542 161539 161544 AAACAACGTGACGCC GTGGCCGCG CCG CGCGGCAAC TTGTTGGTACTGGCC TERM 187 161966 - 161956 - g 70 -8.2 -3.66995 | GGCAAAAAAGACGAA GGGC TGC GCCC GCAACATATTGAGAG uvrD 161500 - 163662 + | DNA-dependent helicase II TERM 188 163675 - 163701 + T 76 -9.4 -3.40971 | overlap 163674 TAATCTGATATTTGT GGTGGTTGCAGT GTC AGTGCGGCCACC TATCTATTTTTATTT YPN_0124 164462 - 163776 - | TetR family transcriptional regulator TERM 189 165129 - 165140 + G 73 -5.8 -4.46212 | TAATGCTATGGCTAT CGCT TTCG AGCG TTTTATGGTGAGCCG YPN_0125 164890 - 166107 + | hypothetical protein YPN_0126 166121 - 166963 + | hypothetical protein TERM 190 167047 - 167068 + F 100 -7.3 -5.85178 | opp_overlap 167047 GCAGGGTACGCAAAA CCGAAGTTG TTAC TGACTTCGG TTTTTTTTGGGTCTT TERM 191 167788 - 167802 + G 85 -3.5 -5.42259 | gap 1, overlap 167750 AGAGTTGGACGATAT CGAGGC TTCG GCC-CG TTTTTTTGAAGATGA YPN_0127 167612 - 168562 + | magnesium/nickel/cobalt transporter CorA TERM 192 168645 - 168601 - T 100 -11.7 -5.5604 | gap 2, opp_overlap 168601 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGGA CTAAC CCCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT TERM 193 168601 - 168645 + T 100 -8.8 -5.42862 | gap 2, opp_overlap 168601 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGG ACTAACC CCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT YPN_0128 169550 - 168660 - | hypothetical protein TERM 194 169324 - 169310 - G 83 -9.2 -4.41494 | overlap 169311 TACTGGCAATCAAAA CGGCGG TCA CCGCCA GTAACAATAGGCGCT TERM 195 169323 - 169311 - G 73 -10.5 -3.24414 | overlap 169310 ACTGGCAATCAAAAC GGCGG TCA CCGCC AGTAACAATAGGCGC YPN_0129 170107 - 169637 - | hypothetical protein YPN_0130 170329 - 171207 + | phospholipase A TERM 196 171231 - 171263 + F 95 -14.2 -2.86164 | gap 1, opp_overlap 171238 171240 GGCGTTATCACAGTT TCAGACACAGGCCGG TTAG CCGGCCTGTG-CAGA TCTAATAGTTGGGGG TERM 197 171257 - 171238 - f 100 -15 -2.89191 | opp_overlap 171231, overlap 171240 TCACAGTTTCAGACA CAGGCCGG TTAG CCGGCCTG TGCAGATCTAATAGT TERM 198 171255 - 171240 - f 86 -11.8 -2.99649 | opp_overlap 171231, overlap 171238 ACAGTTTCAGACACA GGCCGG TTAG CCGGCC TGTGCAGATCTAATA YPN_0131 171285 - 173117 + | ATP-dependent DNA helicase RecQ YPN_0132 173224 - 173844 + | threonine efflux system TERM 199 173840 - 173891 + T 84 -10.9 -3.66216 | gap 1, opp_overlap 173857, overlap 173840 173879 AACTGATATTGTCCC G-CTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGGC TCTTTATACTTTGCG TERM 200 173840 - 173890 + T 77 -11.1 -2.79007 | opp_overlap 173857, overlap 173840 173879 AACTGATATTGTCCC GCTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGG CTCTTTATACTTTGC rhtB 174515 - 173895 - | homoserine/homoserine lactone efflux protein TERM 201 175675 - 175688 + G 71 -5.2 -4.56775 | overlap 175666 GTGCCGAGGCGCTTA GCGC CATATT GCGC TTTTTCGCGCAACAT YPN_0134 174729 - 175724 + | lysophospholipase L2 YPN_0135 175591 - 176568 + | putative sugar phosphatase TERM 202 176606 - 176624 + F 95 -12.4 -3.28041 | TGATGCTGTGGAGTA GGGTGGCC TTT GGTCACCC TTCCTCCTTGGCGTT TERM 203 177028 - 177017 - g 73 -3 -5.04908 | AAAATAAAAAAATAA CAAT AAAT ATTG CTGAGAAGAAATTTA TERM 204 178030 - 178011 - g 87 -4.4 -5.41143 | gap 1 CATGGGTGAAAAAAA TCACTATCA GAA TG-TAGTGA GTCACGTTGAATAAT YPN_0136 176845 - 178044 + | hypothetical protein glpQ 179233 - 178118 - | glycerophosphodiester phosphodiesterase glpA 179858 - 181513 + | sn-glycerol-3-phosphate dehydrogenase subunit A YPN_0139 181503 - 182777 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpC 182774 - 184069 + | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 205 184220 - 184196 - T 100 -13.6 -4.72631 | opp_overlap 184200 184217 AGTAAGTCAATAAAA CAGAGCGCGA GTGAA CCGCGCTCTG CTGGGACAGATTATT YPN_0141 184758 - 184231 - | hypothetical protein YPN_0142 185556 - 184888 - | hypothetical protein YPN_0143 185699 - 186094 + | cell developmental protein SirA zntA 188560 - 186194 - | zinc/cadmium/mercury/lead-transporting ATPase YPN_0145 189600 - 188974 - | hypothetical protein YPN_0146 189890 - 190210 + | hypothetical protein TERM 206 190515 - 190503 - g 80 -3.3 -5.252 | TATTGGCAGAAAAAA CAGCA GGA TGCAG AAAATGATCGCGCAC YPN_0147 190422 - 190841 + | hypothetical protein YPN_0148 191300 - 191028 - | hypothetical protein TERM 207 191270 - 191259 - G 78 -2.2 -5.32882 | overlap 191260 191262 CAGCAGTATAAAAAA CCAG ACGC CTAG CATCAGTAACCGGCC YPN_0149 191952 - 191290 - | 16S rRNA m(2)G966-methyltransferase TERM 208 192315 - 192297 - g 85 -12.4 -3.70773 | overlap 192308 CGTCAGAGTGAAGAA CCAGCAGC AGA GCCGCTGG CGACTGAAAAAGAAG TERM 209 193586 - 193566 - g 80 -3.1 -5.26875 | opp_overlap 193580, overlap 193567 CGGGTAATGAAAAAA CTGGACGGC GAC GCCCCCCAT GAGGTTATGCTGACA YPN_0150 192234 - 193841 + | cell division protein YPN_0151 193847 - 194515 + | cell division protein FtsE ftsX 194505 - 195458 + | cell division protein FtsX TERM 210 196207 - 196193 - g 71 -7.8 -4.09739 | opp_overlap 196198, overlap 196198 TCAACCTGCGTAAAA CCAAGC AGC GCCTGG GCTGGTTTAATCAGG YPN_0153 195769 - 196626 + | RNA polymerase factor sigma-32 TERM 211 196689 - 196669 - f 93 -11.2 -4.11183 | opp_overlap 196669 CGGCACGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTGTGCCCAG TERM 212 196669 - 196689 + F 100 -11.2 -4.34402 | opp_overlap 196669 CGGCACGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTGTGCCCAG TERM 213 196727 - 196709 - f 100 -16 -4.36914 | opp_overlap 196709 GCTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 214 196709 - 196727 + F 100 -16 -3.07307 | opp_overlap 196709 GCTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0154 196840 - 197298 + | transposase for the IS1541 insertion element TERM 215 197372 - 197404 + T 100 -11.3 -5.41143 | opp_overlap 197379, overlap 197378 197379 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTTTGGCAGATA TERM 216 197378 - 197398 + T 100 -12.5 -4.21073 | opp_overlap 197379, overlap 197372 197379 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTTTGG TERM 217 197397 - 197379 - T 100 -16 -4.8048 | opp_overlap 197378 197372 197379 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTTG TERM 218 197379 - 197397 + T 100 -16 -3.10203 | opp_overlap 197379, overlap 197378 197372 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTTTG YPN_0155 197981 - 197544 - | acetyltransferase TERM 219 197838 - 197816 - G 70 -4.8 -4.73388 | opp_overlap 197837 AACGTGCAGCAAAAA GTGGTCTACC CTC AGTAATCCAC TGTTGCCAGGCAGCA TERM 220 198725 - 198706 - g 80 -12.2 -3.39717 | ATTTATGAAGATGAA GGGGTGAT AATG ATCACCCC TGCTGCTACAAACGC TERM 221 199363 - 199352 - g 74 -7.2 -4.17023 | overlap 199360 199361 CTAACGATCTGAAAA CCGG CAAA CCGG TTGAGACCGTGATGG YPN_0156 198358 - 199473 + | branched-chain amino acid-binding protein TERM 222 199563 - 199583 + F 100 -10.4 -4.70659 | CTTCTATCAACTGCA TCCCCTCG TATTC CGGGGGGA TTTTTCCCTCTACAG YPN_0157 199654 - 200580 + | branched-chain amino acid transporter permease subunit LivH TERM 223 201533 - 201512 - g 73 -8.7 -3.71672 | CCCGACCAAAATTAA GCTGACGGC ATTT ACCATCAGC GCGGCCTTTGCAGGT livM 200577 - 201863 + | leucine/isoleucine/valine transporter permease subunit livG 201860 - 202627 + | leucine/isoleucine/valine transporter ATP-binding subunit livF 202672 - 203373 + | leucine/isoleucine/valine transporter ATP-binding subunit YPN_0161 203601 - 204062 + | hypothetical protein YPN_0162 205283 - 204177 - | hypothetical protein YPN_0163 205893 - 205375 - | hypothetical protein TERM 224 205432 - 205446 + g 79 -9.2 -4.13728 | TTTCCCCGCAGTATT GTCCCC AGC GGGGGC TTTTGCGGATATCTG YPN_0164 206602 - 205955 - | hypothetical protein YPN_0165 207260 - 206574 - | hypothetical protein TERM 225 207107 - 207121 + gr 72 -9.2 -3.22475 | opp_overlap 207107, overlap 207105 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGCA TERM 226 207121 - 207107 - GR 71 -7 -4.07868 | opp_overlap 207107 207105 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGCA YPN_0166 209611 - 207278 - | hypothetical protein TERM 227 208481 - 208515 + g 87 -4.8 -5.49809 | overlap 208483 TTGTACGCTTTCTAT CACCCTGCTGCGTCCA AAC TGGACTAAACGGGGCG TTTTTTTACCCTTTG TERM 228 209812 - 209840 + r 71 -9 -3.4052 | gap 1, opp_overlap 209812 209814 209816 AGTATGACAGATATA TACAGCCA-GGAG ATAA TTCCATGGCTGTA TTCATTAAATTAACA YPN_0167 210486 - 209878 - | hypothetical protein TERM 229 210542 - 210555 + H 70 -5.3 -4.55689 | TAACGTTATTTCAAG TGGTA ATTA TACCA TTTTGTCTGAATGAT TERM 230 211670 - 211659 - g 100 -5.8 -5.5353 | opp_overlap 211657 211659 GATATGAATAAAAAA GGTG ATTT CACC TATTTTGGCCGTAAA YPN_0168 210924 - 212243 + | glycerol-3-phosphate transporter periplasmic binding protein YPN_0169 212541 - 213428 + | glycerol-3-phosphate transporter permease TERM 231 213653 - 213663 + G 76 -5.4 -4.81863 | CCTTTCGGGTTGATG CTGT TGA ACAG TTTTGTTATGGCTTT TERM 232 214202 - 214217 + G 71 -6.8 -4.25256 | ATTTTGACTTTAATT CCACCG GTCG TGGTGG TTCTTTTGATGCAGC YPN_0170 213425 - 214270 + | glycerol-3-phosphate transporter membrane protein TERM 233 214933 - 214907 - g 74 -7.9 -4.2461 | opp_overlap 214930 ATTGTGATGAACAAA GGGGTTGCCGA GCAAA TCGGTACCCCC AGCGAGGTTTATAAA TERM 234 215220 - 215242 + G 70 -9.8 -3.32844 | CGCACGGCCTGTGGG GCGGGCAAAG TAT CATTGCTCGC TTATCCCATGAAGAA TERM 235 215269 - 215259 - g 71 -6.8 -4.25056 | opp_overlap 215258, overlap 215260 TATCCCATGAAGAAA TGCC AGT GGCA GGCAGTACATTGCAT ugpC 214277 - 215350 + | glycerol-3-phosphate transporter ATP-binding subunit ugpQ 215347 - 216096 + | cytoplasmic glycerophosphodiester phosphodiesterase TERM 236 216172 - 216138 - f 85 -5.7 -5.18726 | CCGCCATAATAAAAA CAGGTCAGCCATT CTTACATTT ACGGGCTGACCTG GCCCGGCCTGACAGG YPN_0173 216197 - 217153 + | membrane protein TERM 237 217619 - 217631 + GT 70 -3.3 -4.89729 | overlap 217609 GATGCGTGTCGGGCT GGCCG CAC TGGTC TTTTTGCCTTTTCTG YPN_0175 219246 - 218293 - | LysR family transcriptional regulator YPN_0174 217473 - 218405 + | membrane protein YPN_0176 219352 - 221628 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 238 221663 - 221678 + T 100 -11.8 -5.52096 | GTAGTGGGGCTTTTG GGGCGC TTTC GCGCCC TTTTTTATTGCGTTT YPN_0177 222555 - 221683 - | carboxymethylenebutenolidase TERM 239 221937 - 221922 - G 70 -10.4 -2.88544 | CTTTACCTCCATATA GCCCCA ACAC TGGGGC GCAGAGATCGATAGC TERM 240 222171 - 222159 - G 76 -7.7 -4.29738 | opp_overlap 222158 CGAGATCCACCAAAA CCTGA CGA TCAGG GACTTTTTTTACCAG YPN_0178 222983 - 223744 + | uridine phosphorylase TERM 241 223778 - 223797 + F 100 -11.4 -4.36862 | TAGAGGGTTTGTTCT CGGGTCAG TTTA CTGGCCCG TTCTTTATTTCATCT YPN_0179 223865 - 224695 + | hypothetical protein TERM 242 225111 - 225130 + G 95 -6.4 -5.5112 | overlap 225113 GTATCCTTACGATCT GCTACCGT TTAT ACGGTATC TTTTTTGTTCGTAAG TERM 243 225113 - 225128 + G 76 -7.6 -4.39002 | overlap 225111 ATCCTTACGATCTGC TACCGT TTAT ACGGTA TCTTTTTTGTTCGTA TERM 244 225882 - 225895 + G 76 -8.1 -4.15222 | CTGAAATTCAATTCC CTGCG GTTA CGCAG TTTATTCACGGCGGT TERM 245 226598 - 226614 + G 77 -12.3 -3.10895 | GCCACGATTATCCTG CGCTTGG CGA CCAAGCG TGTGTATATGTTGAC YPN_0180 225059 - 226870 + | carbon starvation protein TERM 246 226899 - 226926 + F 100 -13.6 -5.5074 | opp_overlap 226903 TTGTGCTAATTTGTT TAAACGGCTGGA ATCT TCTAGCCGTTTA TTTTTTGTTAAGTTA TERM 247 227482 - 227495 + G 74 -2.3 -5.07107 | overlap 227492 TCTTCGAGCGTTGGG GGTTC TTTG GGGCC TTTTTTGGCCGTTTC YPN_0181 227142 - 227672 + | hypothetical protein YPN_0182 227880 - 229385 + | DNA recombination protein TERM 248 229394 - 229418 + F 72 -7.7 -3.75015 | AGAGTAATTTAATTG GCACCGCAACC AGG GGGTGTGGGGC TTTCATCGGAGTTCT ubiE 229477 - 230232 + | ubiquinone/menaquinone biosynthesis methyltransferase YPN_0184 230246 - 230896 + | hypothetical protein TERM 249 232265 - 232252 - g 71 -5.2 -4.48449 | overlap 232248 232246 GCATTAAAAGAGAAA GCCC CTTTCT GGGC TGAAAAATTCCCTGA ubiB 230896 - 232527 + | putative ubiquinone biosynthesis protein UbiB YPN_0186 232707 - 232973 + | Sec-independent protein translocase protein TatA YPN_0187 232977 - 233639 + | Sec-independent protein translocase protein TatB TERM 250 233715 - 233729 + G 81 -6.4 -4.98436 | opp_overlap 233715 233716, overlap 233716 TACTGAATTGTATAA TCACCA TTT TGGTGG TTTTTCTGGTATTGG YPN_0188 233642 - 234418 + | TatABCE protein translocation system subunit TERM 251 234439 - 234454 + F 100 -11.8 -4.45168 | TGCGTTGATATTTAG CCGCCC TTCT GGGCGG TTTCTGTTTTGGAAC YPN_0189 234474 - 235013 + | hypothetical protein TERM 252 235018 - 235036 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_0190 235040 - 236062 + | transposase for insertion sequence IS100 TERM 253 236143 - 236129 - g 77 -11.4 -3.3506 | overlap 236120 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_0191 236062 - 236841 + | transposase/IS protein TERM 254 237190 - 237210 + G 80 -10.3 -3.75153 | opp_overlap 237190 237189 237188 AAACTGATGAAAACG CCCGCCGGG TTT TCCGGCTGG TTTGAGTTAGGAGAA YPN_0192 236880 - 237215 + | hypothetical protein YPN_0193 237230 - 238252 + | delta-aminolevulinic acid dehydratase TERM 255 238274 - 238312 + T 73 -8.9 -3.56273 | opp_overlap 238278 238286, overlap 238275 238278 ATAACTAAGAGTCAC AGCATTCAGATAGGCAC TAACT GCGCCTATCTGAATGAA TTCTATAATGATGAG TERM 256 238275 - 238311 + T 88 -12.4 -2.73443 | opp_overlap 238278 238286, overlap 238274 238278 TAACTAAGAGTCACA GCATTCAGATAGGCAC TAACT GCGCCTATCTGAATGA ATTCTATAATGATGA TERM 257 238308 - 238278 - T 100 -14.9 -2.66787 | opp_overlap 238275 238274 238278, overlap 238286 CTAAGAGTCACAGCA TTCAGATAGGCAC TAACT GCGCCTATCTGAA TGAATTCTATAATGA TERM 258 238278 - 238308 + T 88 -12.7 -2.64051 | opp_overlap 238278 238286, overlap 238275 238274 CTAAGAGTCACAGCA TTCAGATAGGCAC TAACT GCGCCTATCTGAA TGAATTCTATAATGA rfaH 238850 - 238362 - | transcriptional activator RfaH YPN_0195 239098 - 240594 + | 3-octaprenyl-4-hydroxybenzoate decarboxylase fre 240649 - 241350 + | FMN reductase TERM 259 241379 - 241363 - T 82 -5.7 -4.97402 | overlap 241364 TAAAAGCGATAAAAA GCCCGCC TCT GACCGGC GGGGAAATAGCAACT TERM 260 241382 - 241364 - T 73 -8.8 -3.56814 | overlap 241363 AAAAGCGATAAAAAG CCCGCC TCTGACC GGCGGG GAAATAGCAACTAAA fadA 242673 - 241510 - | 3-ketoacyl-CoA thiolase TERM 261 242630 - 242612 - G 79 -8 -4.33274 | CGTACATGACGAAAA GCCCCCCC TTT GGAGCGGC CCATCGGTGTACGCA fadB 244874 - 242685 - | multifunctional fatty acid oxidation complex subunit alpha TERM 262 242726 - 242714 - G 70 -9.1 -3.50335 | TGGTAGAAACATCAA GCAGC GCT GCTGC CACAGGATAATAACT TERM 263 243411 - 243424 + g 74 -8.1 -4.05033 | opp_overlap 243410 243407 ATCATTGACAACAAT TGGGG TTTT CCCCA TTTGTGTAGCGTAAG TERM 264 244612 - 244595 - G 76 -8.5 -4.1899 | opp_overlap 244606 244607, overlap 244610 CCAGTCGATTGAAAA TGGTGTT GGCG AACACCA GCCACTGGTGCAGTT TERM 265 245155 - 245129 - H 79 -8 -4.31835 | opp_overlap 245130, overlap 245130 AATTTGTAGAATAAA CGTCATCGAAAC ATG GTTTCGGTGACT ATGATAAGATAAAAA TERM 266 245154 - 245130 - H 84 -11.5 -3.18378 | opp_overlap 245130, overlap 245129 ATTTGTAGAATAAAC GTCATCGAAAC ATG GTTTCGGTGAC TATGATAAGATAAAA TERM 267 245130 - 245154 + H 93 -13.7 -2.79796 | opp_overlap 245130 245129 ATTTGTAGAATAAAC GTCATCGAAAC ATG GTTTCGGTGAC TATGATAAGATAAAA TERM 268 245288 - 245321 + G 74 -2.6 -5.1356 | overlap 245288 245289 CGTCATCAATTAGAT G-CGTTGCTGATTCAC TCTG GTGAATTA-CAGCGGC TTTTTCTTGATGACC YPN_0199 245201 - 246532 + | proline dipeptidase TERM 269 246676 - 246695 + G 100 -11.4 -4.77165 | opp_overlap 246674 246670 CAACAACATCCAACG GCCCGGCA TCAT TGCTGGGC TTTTGTTGTGCCCAG TERM 270 246733 - 246715 - g 100 -16 -4.36914 | opp_overlap 246715 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 271 246715 - 246733 + G 93 -16 -3.07307 | opp_overlap 246715 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0200 246532 - 246741 + | hypothetical protein YPN_0201 246846 - 247304 + | transposase for the IS1541 insertion element TERM 272 247382 - 247406 + G 83 -9.9 -4.16842 | opp_overlap 247385, overlap 247384 247385 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGCCGGTCCC TERM 273 247384 - 247404 + G 85 -12.5 -3.68324 | opp_overlap 247385, overlap 247382 247385 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGCCGGTC TERM 274 247385 - 247403 + G 88 -16 -2.80512 | opp_overlap 247385, overlap 247384 247382 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCCGGT TERM 275 247403 - 247385 - g 100 -16 -4.8048 | opp_overlap 247385 247384 247382 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCCGGT YPN_0202 247377 - 247853 + | hypothetical protein TERM 276 248133 - 248152 + G 95 -5 -5.55769 | TTTTGGACGGTGTTG GGTAGTGT CGGG GCATTACC TTTTTTATTCTCAGA TERM 277 248424 - 248413 - g 81 -5.8 -4.95302 | opp_overlap 248413 TGAAAGATAATAAAA TGCG GCCC CGCA TTGCTGAAACGGCTA YPN_0203 247893 - 249344 + | potassium transporter hemG 249366 - 249899 + | protoporphyrinogen oxidase TERM 278 253734 - 253716 - f 82 -10.3 -3.57798 | overlap 253729 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 279 254194 - 254168 - f 70 -9.4 -2.75844 | opp_overlap 254182 254190, overlap 254167 254170 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 280 254241 - 254230 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 281 255353 - 255363 + F 74 -6.8 -4.27316 | opp_overlap 255353 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 282 255618 - 255584 - f 95 -9.2 -4.50627 | opp_overlap 255591 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGCGCGAAACACA TERM 283 255591 - 255611 + F 100 -10.4 -4.8048 | opp_overlap 255584 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG murB 256037 - 257074 + | UDP-N-acetylenolpyruvoylglucosamine reductase YPN_0206 257071 - 258030 + | biotin--protein ligase TERM 284 258057 - 258040 - T 71 -9.9 -2.63723 | opp_overlap 258037 258035 258032, overlap 258039 GTCTGATTAATTAAT GGGAGAT AACT ATCTCCC GTATAGATTATTTTC YPN_0207 259015 - 258065 - | pantothenate kinase TERM 285 258566 - 258580 + g 100 -8.6 -5.5604 | opp_overlap 258566 ATTATGCATATCATA GGATTC CGG GAATCC TTTTTTCTTCATTAG TERM 286 258885 - 258909 + g 73 -5.7 -4.55093 | TCTAATGAAAGGTCT TCGTTAATCCC TTT GAGTTTAACGA TTTCTTCTTCTGTCA TERM 287 259079 - 259105 + r 91 -8 -4.8048 | opp_overlap 259080, overlap 259080 AACTCCAGATAAGAA ACAAGCTGCATA TTA TAGGCAGCTTGG TTTTTGGTGTAGACA TERM 288 259080 - 259104 + r 89 -11.5 -3.47806 | opp_overlap 259080, overlap 259079 ACTCCAGATAAGAAA CAAGCTGCATA TTA TAGGCAGCTTG GTTTTTGGTGTAGAC TERM 289 259104 - 259080 - R 100 -11.5 -4.39329 | opp_overlap 259080 259079 ACTCCAGATAAGAAA CAAGCTGCATA TTA TAGGCAGCTTG GTTTTTGGTGTAGAC YPN_0208 259777 - 259226 - | acetyltransferase TERM 290 259845 - 259863 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_0209 259867 - 260889 + | transposase for insertion sequence IS100 TERM 291 260970 - 260956 - g 77 -11.4 -3.3506 | overlap 260947 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_0210 260889 - 261668 + | transposase/IS protein YPN_0211 262725 - 263735 + | elongation factor Tu YPN_0212 263737 - 263910 + | elongation factor Tu TERM 292 263952 - 263935 - f 100 -11.3 -4.41548 | opp_overlap 263935 CGACATGCGATAAAA GGGCATC ATTT GATGCCC TTTTTATACGTTGCA TERM 293 263935 - 263952 + F 100 -11.3 -4.91712 | opp_overlap 263935 CGACATGCGATAAAA GGGCATC ATTT GATGCCC TTTTTATACGTTGCA TERM 294 264102 - 264126 + F 79 -7.9 -4.28115 | overlap 264103 264122 GCATCCTTCGGCTTG GTTTGCTTTGC GAT GCGAAGCAAAG TTGTTTGTTCTGAAT TERM 295 264103 - 264125 + F 84 -11.4 -3.15784 | overlap 264102 264122 CATCCTTCGGCTTGG TTTGCTTTGC GAT GCGAAGCAAA GTTGTTTGTTCTGAA TERM 296 264477 - 264520 + G 71 -6.8 -4.25056 | gap 1, overlap 264486 CTGCTGTAATGTCAC TGATTCTATGGGGACT-GGAT GGT ATCCTAGTCCGCTTGGTATCA TTTATTACTGGCCTG secE 264161 - 264544 + | preprotein translocase subunit SecE nusG 264546 - 265091 + | transcription antitermination protein NusG TERM 297 265132 - 265160 + F 100 -16.2 -5.2853 | TTGAGTCTTGTCTTA GGCGCGAAATTA AAATA TAATTTCGCGCC TTTTGTTTTTAGATG rplK 265282 - 265710 + | 50S ribosomal protein L11 rplA 265714 - 266418 + | 50S ribosomal protein L1 TERM 298 266441 - 266482 + F 93 -12.6 -3.16553 | gap 1, overlap 266438 266439 266442 266445 TTGCTTTTATCGCTT TA-CGTGGGCGTAAGGTTT GTCTA AAATCTTACGCCCATGCTA TCTGTTGATCGTTGT TERM 299 266442 - 266480 + F 100 -13.3 -3.13565 | overlap 266438 266441 266439 266445 TGCTTTTATCGCTTT ACGTGGGCGTAAGGTTT GTCTA AAATCTTACGCCCATGC TATCTGTTGATCGTT TERM 300 266445 - 266477 + F 100 -15.8 -2.76689 | overlap 266438 266442 266441 266439 TTTTATCGCTTTACG TGGGCGTAAGGTTT GTCTA AAATCTTACGCCCA TGCTATCTGTTGATC TERM 301 266621 - 266631 + F 71 -4 -4.88895 | opp_overlap 266621 266626 GTGACAGAACCTAAA GAAA ATT TTTC TTTCTTTATTTGTTT TERM 302 266661 - 266626 - f 73 -3.5 -4.94962 | opp_overlap 266621, overlap 266621 AGAACCTAAAGAAAA TTTTTCTTTCTTTAT TTGTTT ATAAAGAATGATAAA GAATAGTCTTTGCTG TERM 303 266705 - 266726 + F 71 -9.5 -3.06915 | GTGTTTCAACGCTCG TTCACGGCA ATTT TGTCGTGAA TTGGGTGACGTGAGT TERM 304 266743 - 266761 + F 95 -13.2 -3.14132 | TGGGTGACGTGAGTT CCGGAGAA TTA TTCTCCGG TTAATCCAGGAGCAA rplJ 266783 - 267280 + | 50S ribosomal protein L10 rplL 267347 - 267715 + | 50S ribosomal protein L7/L12 TERM 305 267755 - 267780 + F 100 -14.1 -4.64766 | ACTTTATAGGCTGAT GGCTGGTGACT TTTT AGTCATCAGCC TTTTTGCGCTGTAGG TERM 306 268712 - 268726 + G 72 -8.6 -3.9122 | opp_overlap 268699 AATTTCACCACTGCA CAGATC TTG GATCTG TTCTTTGAGAAAGTG TERM 307 271100 - 271084 - g 91 -10.9 -4.56314 | CGAAGACAAGCAAAA CCAACTG GAA CAGTTGG CAGAGCAGTACGACG TERM 308 271988 - 271978 - g 79 -5.4 -4.91459 | overlap 271966 CAAGATGTACAAAAA CATC GTG GATG GCGATCACCGTATGG rpoB 268058 - 272086 + | DNA-directed RNA polymerase subunit beta TERM 309 274027 - 274012 - g 70 -2.6 -5.00616 | gap 1 CCGCTGGGTAAAAAA GCTATCT CTA AGAT-GC TGAACACGTGTTACC YPN_0220 272179 - 276435 + | DNA-directed RNA polymerase subunit beta' TERM 310 276484 - 276460 - T 100 -9.9 -4.51743 | opp_overlap 276463, overlap 276462 276463 CTACTACCAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 311 276482 - 276462 - T 100 -12.5 -3.86206 | opp_overlap 276463, overlap 276460 276463 ACTACCAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 312 276463 - 276481 + T 100 -16 -4.8048 | opp_overlap 276463 276462 276460 CTACCAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 313 276481 - 276463 - T 100 -16 -2.90639 | opp_overlap 276463, overlap 276462 276460 CTACCAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_0221 277020 - 276562 - | transposase for the IS1541 insertion element TERM 314 277151 - 277133 - R 100 -16 -3.07307 | opp_overlap 277133 277144 277146 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 315 277133 - 277151 + r 100 -16 -4.36914 | opp_overlap 277133, overlap 277144 277146 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 316 277197 - 277166 - R 86 -11.7 -3.28712 | opp_overlap 277146 277144 277171, overlap 277171 GTTTTCTGGGCACAA CAAAACCCGCATC TTTCGG GATGCGGGTTTTT GAGAGACGAACGGCC TERM 317 277192 - 277171 - R 100 -11.6 -4.77165 | opp_overlap 277146 277144 277171, overlap 277166 CTGGGCACAACAAAA CCCGCATC TTTCGG GATGCGGG TTTTTGAGAGACGAA TERM 318 277171 - 277192 + r 100 -12.3 -4.56597 | opp_overlap 277171 277166, overlap 277146 277144 CTGGGCACAACAAAA CCCGCATCT TTCG GGATGCGGG TTTTTGAGAGACGAA TERM 319 277208 - 277225 + r 100 -9.8 -6.32017 | opp_overlap 277208 TTTTTGAGAGACGAA CGGCCC CTTCTC GGGCCG TTTTTTTTGTTTATT TERM 320 277225 - 277208 - R 76 -9.8 -3.32022 | opp_overlap 277208 TTTTTGAGAGACGAA CGGCCC CTTCTC GGGCCG TTTTTTTTGTTTATT TERM 321 277414 - 277427 + r 70 -3.7 -4.74706 | opp_overlap 277415, overlap 277415 TAACTCACTGATATT ACGCC TTCG GGCGG TTTTTCAATATTACG thiH 278582 - 277452 - | thiamine biosynthesis protein ThiH TERM 322 277495 - 277511 + g 70 -4.3 -4.65747 | overlap 277496 TCCCAATCTTTCCAC ACGGGCT GTA AGCCTGC TTTTGTTAACGCTTG TERM 323 277861 - 277851 - G 70 -3.2 -4.86731 | overlap 277855 TTGTTGCAAATAAAA CAGA TGC TCCG CCAGCATATAACAGT thiG 279390 - 278575 - | thiazole synthase YPN_0224 279607 - 279392 - | sulfur carrier protein ThiS YPN_0225 280401 - 279604 - | thiamine biosynthesis protein ThiF TERM 324 279905 - 279918 + g 74 -4.5 -4.85599 | overlap 279897 AACCCCACAGCACTG CCGCT GATT AGTGG TTTTTGTGCCGTGAC YPN_0226 281065 - 280391 - | thiamine-phosphate pyrophosphorylase TERM 325 280620 - 280598 - G 71 -11.2 -2.71731 | opp_overlap 280596 280595 280614 CTGACGGCTTAACGA CGCCAACCCC TGT GGGGATGACG GCATCTGTTTGGTCT YPN_0227 283097 - 281052 - | thiamine biosynthesis protein ThiC TERM 326 283408 - 283387 - R 78 -9.5 -3.72152 | opp_overlap 283387 283398, overlap 283381 GAATTAAAACTACAA TAGCCTACT TATG AGCAGGCTA TTCTGCTTGCTCATT TERM 327 283398 - 283421 + r 86 -8.9 -4.37886 | opp_overlap 283387 283381, overlap 283387 ACAATAGCCTACTTA TGAGCAGGC TATTCT GCTTGCTCA TTTTGTGCACGCTAC YPN_0228 283982 - 283473 - | anti-RNA polymerase sigma 70 factor nudC 284079 - 284861 + | NADH pyrophosphatase YPN_0230 284996 - 285739 + | hypothetical protein TERM 328 286036 - 286054 + G 76 -11 -3.33492 | TAGCCTGTGAGGTCA CGATGCAG CCA CTGCGTCG TTATCCGCTGGATGC TERM 329 286730 - 286713 - g 78 -9.9 -3.85698 | CGTGTTGGTGATAAA GTTGCCT TGCA AGGCAAC ATGGATCCTTCGGTT hemE 285858 - 286925 + | uroporphyrinogen decarboxylase TERM 330 287183 - 287199 + G 77 -10.9 -3.56959 | opp_overlap 287182, overlap 287186 CTGGTGGAATACCAG GTTGCCA GAG TGGCAAC TTCTCTGCCTTATAT YPN_0232 286991 - 287695 + | endonuclease V YPN_0233 287741 - 288331 + | hypothetical protein YPN_0234 288520 - 288795 + | transcriptional regulator HU subunit alpha TERM 331 288823 - 288836 + F 78 -5.2 -4.99043 | AATAATAAGCAGGGG GGGG ATAAAA CCCC TTTTGTTTATGCAGC YPN_0235 288845 - 289498 + | hypothetical protein YPN_0236 290932 - 289646 - | phosphoribosylamine--glycine ligase TERM 332 289922 - 289890 - G 76 -12 -2.87003 | overlap 289885 289887 CCATGAATAACATCA CCCTGGCGGTAATC TGCTG GATAACCGCCAGCG GCTAAAACGACCCCC purH 292581 - 290992 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 333 295083 - 295046 - H 78 -5.7 -4.7629 | opp_overlap 295046 295040 295049, overlap 295049 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 334 295080 - 295049 - H 78 -7.4 -4.47888 | opp_overlap 295049 295046 295040, overlap 295046 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 335 296539 - 296521 - H 82 -10.3 -3.57798 | overlap 296534 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 336 296999 - 296973 - H 70 -9.4 -2.75844 | opp_overlap 296987 296995, overlap 296972 296975 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 337 297046 - 297035 - H 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 338 298158 - 298168 + H 74 -6.8 -4.27316 | opp_overlap 298158 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 339 298423 - 298389 - H 95 -9.2 -4.50627 | opp_overlap 298396 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGCGCGAAACACA TERM 340 298396 - 298416 + H 100 -10.4 -4.8048 | opp_overlap 298389 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 341 300063 - 300084 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_0238 298881 - 300089 + | transposase YPN_0239 300677 - 300147 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 342 300464 - 300478 + g 78 -10 -3.87815 | opp_overlap 300466 GTGCCCAACGGCAAT CACTGG CGA CCAGTG TTTGTAGCGCTCCAG TERM 343 300660 - 300640 - G 88 -14.1 -3.44051 | opp_overlap 300638 CCTGTACCACTATAA GCCGCTATT CCT AATAGCGGC GGTGACTTGTAGTTC mobA 301264 - 300677 - | molybdopterin-guanine dinucleotide biosynthesis protein A YPN_0241 301418 - 301687 + | hypothetical protein YPN_0242 301778 - 302764 + | serine/threonine protein kinase YPN_0243 302792 - 303415 + | periplasmic protein disulfide isomerase I TERM 344 303432 - 303448 + F 100 -6.5 -6.32017 | opp_overlap 303431 303432 TTAGTACATAAAGAG GGGGC TTTTGTT GCCCC TTTTTTTTATTTATT TERM 345 304054 - 304087 + G 100 -10.5 -4.72272 | gap 1 ATGCTACGCAGTCTG CTGCTGCAATATCGAC CAA GTC-ATGTTGCAGTAG TTTTTGATGCAAAAG TERM 346 305241 - 305224 - g 83 -9.9 -4.19817 | opp_overlap 305236 GGTATCGATCTAAAA GGTATCG CTTT CGATACC ATGCTGGAGTCTTAT YPN_0244 303907 - 306705 + | DNA polymerase I TERM 347 306966 - 306936 - f 76 -11.1 -2.62184 | opp_overlap 306938 TTTGGCTGTATATTA GCCGCCCCAGTCA TTTAT TGACTGGGGCGTT TTTTGTGCCCAGAAA TERM 348 306938 - 306964 + F 100 -18.1 -5.24129 | opp_overlap 306936 TGGCTGTATATTAGC CGCCCCAGTCA TTTAT TGACTGGGGCG TTTTTTGTGCCCAGA TERM 349 307001 - 306983 - f 100 -16 -4.36914 | opp_overlap 306983 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 350 306983 - 307001 + F 100 -16 -3.07307 | opp_overlap 306983 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0245 307114 - 307572 + | transposase for the IS1541 insertion element TERM 351 307646 - 307678 + T 100 -11.3 -3.92143 | opp_overlap 307653, overlap 307650 307652 307653 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATGGGGATTTTG TERM 352 307650 - 307674 + T 100 -9.9 -4.55697 | opp_overlap 307653, overlap 307646 307652 307653 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATGGGGAT TERM 353 307652 - 307672 + T 100 -12.5 -3.88703 | opp_overlap 307653, overlap 307650 307646 307653 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATGGGG TERM 354 307671 - 307653 - T 100 -16 -4.8048 | opp_overlap 307652 307650 307646 307653 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG TERM 355 307653 - 307671 + T 100 -16 -2.92499 | opp_overlap 307653, overlap 307652 307650 307646 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG YPN_0246 308474 - 307824 - | GTPase EngB TERM 356 309020 - 309072 + H 100 -13.6 -3.99405 | gap 1, opp_overlap 309010 309035, overlap 309035 GGATATCCTTCCGCA GAAG-GTGCGAAAAAAGGCGACAGG TTAA CCTGCCGCCTTTTTTCTTTCTCTTC TTTCTGCTAGATTCC TERM 357 309056 - 309035 - H 100 -13.7 -5.03145 | opp_overlap 309020 309035 GAAGGTGCGAAAAAA GGCGACAGG TTAA CCTGCCGCC TTTTTTCTTTCTCTT TERM 358 309035 - 309056 + H 100 -11.5 -5.7827 | opp_overlap 309035, overlap 309020 GAAGGTGCGAAAAAA GGCGACAGG TTAA CCTGCCGCC TTTTTTCTTTCTCTT YPN_0247 309219 - 309785 + | hypothetical protein TERM 359 310764 - 310738 - g 70 -8.6 -3.70102 | opp_overlap 310737 ACGTAAAATCAAAGA CGCTGATCTGCC AAC GGCGGAGCAACG GTTGGATATTTTGCA YPN_0248 309968 - 311341 + | coproporphyrinogen III oxidase TERM 360 311380 - 311347 - T 83 -11.8 -2.80994 | gap 1, opp_overlap 311351 311358 TGTAATCTGACGATA TCACCCTC-AGTGCG GTTAT CGCTCTTGAGGGTGA CCATCTGGCGGGAAC glnG 312807 - 311395 - | nitrogen regulation protein NR(I) TERM 361 311777 - 311788 + g 76 -4.4 -4.98531 | overlap 311784 AGCGCCGCTTCGGTC TCTG GATG CAGA TTTTTGCTTTCCACG glnL 313864 - 312815 - | nitrogen regulation protein NR(II) TERM 362 314016 - 313999 - R 100 -11.3 -5.28826 | AAAGTGGAGAAAAAA GCCCATC CTAA GATGGGC CAAAAGTTTCCACGG glnA 315526 - 314117 - | glutamine synthetase TERM 363 314739 - 314749 + g 71 -6.8 -4.13945 | CCTGAGCCGTTATCG CCGA ACA TCGG TTTTGGCATAAAGGT YPN_0252 316088 - 317911 + | GTPase TERM 364 317933 - 317957 + F 100 -14.3 -3.75738 | TTTGCATTGTTGATA CTTAGGGCGCT CAA GGCGCCCTGAG TTCTTACTCCTCCTA YPN_0253 318233 - 318823 + | phosphatase rbn 318860 - 319804 + | ribonuclease BN YPN_0255 319811 - 320248 + | D-tyrosyl-tRNA deacylase YPN_0256 321101 - 320322 - | transposase/IS protein TERM 365 321020 - 321034 + g 77 -11.4 -3.3506 | overlap 321033 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_0257 322123 - 321101 - | transposase for insertion sequence IS100 TERM 366 322145 - 322127 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 367 322337 - 322324 - g 70 -9.5 -3.25762 | overlap 322322 AAAATAATCAATACA GCCCC GACT GGGGC AAACACTATCGTCAG TERM 368 324126 - 324115 - g 79 -7.2 -4.58466 | GCGACAATCAGAAAA GCGG AAAC CCGC AGCTACAGTTCGTGT YPN_0258 322257 - 324320 + | hypothetical protein YPN_0259 324317 - 325633 + | hypothetical protein TERM 369 325846 - 325861 + G 100 -6.8 -5.81412 | opp_overlap 325846 TAGTATGAAAATTAA GTCACC GCAA GGTGGC TTTTTTTTGCCTAAA YPN_0260 325700 - 325930 + | hypothetical protein YPN_0261 326177 - 326644 + | hypothetical protein TERM 370 326765 - 326754 - g 70 -4.4 -4.7254 | AGGGGCGAGCAAAAA GACA ATAC TGTC ATGCTTTGATTCAAT TERM 371 327941 - 327931 - g 73 -5.4 -4.73388 | overlap 327933 AATGGCGATGAAAAA TAGC ATT GCTA ATACGATGGATAAAG YPN_0262 326657 - 327982 + | modification methylase TERM 372 328210 - 328195 - gf 74 -7.6 -4.04188 | opp_overlap 328198 AGTTAAAGATAATAA TTTCCG ATTA CGGAAA CGGTATGTCGGTAGA YPN_0263 328032 - 328754 + | hypothetical protein YPN_0264 328726 - 330099 + | hypothetical protein YPN_0265 330730 - 330443 - | hypothetical protein TERM 373 330822 - 330812 - H 71 -6.8 -4.12188 | opp_overlap 330811, overlap 330819 TTACTACTCTGAAAA CGAG AAT CTCG CCTGTTTTCCGGCGG TERM 374 330901 - 330919 + H 70 -8 -3.64487 | CCTGCGTGGGCAGTT CCTTCCGC CGT GCGGGTGG TTCTTACCAGTGTCA YPN_0266 331347 - 332759 + | hypothetical protein YPN_0267 332756 - 333910 + | hypothetical protein YPN_0268 335102 - 334056 - | M48 peptidase family protein YPN_0269 336309 - 335113 - | hypothetical protein YPN_0270 337015 - 337551 + | hypothetical protein TERM 375 337600 - 337581 - g 77 -13.6 -2.55544 | opp_overlap 337579 337577, overlap 337577 TTATCAGTCAACTGA CGGCTCTG GTAT CAGAGCCG AATAGTATTCACCAT YPN_0271 337553 - 338428 + | transcriptional regulator YPN_0272 338765 - 338421 - | putative fructose-like phosphotransferase EIIB subunit 3 YPN_0273 339178 - 338858 - | putative fructose-like phosphotransferase EIIB subunit 2 TERM 376 339301 - 339280 - R 95 -13.1 -3.15544 | overlap 339265 GCTCATCGGGACTAA TGAGCCTCA TCCT TGAGGCTCA CCCTGCGGGCTAGCA YPN_0274 340601 - 339519 - | putative fructose-like permease EIIC subunit 2 TERM 377 340797 - 340784 - H 78 -5.3 -4.91511 | ATGTCATCAGAAAAA TGAGA GCCA TCTCA ACTTCCCGGCAATGA TERM 378 343217 - 343231 + G 76 -4.2 -5.05782 | TGGCTGCGGATGTGT GGGC GCGAGAA GCCC TTTTTTCCACTGGAT YPN_0275 340966 - 343524 + | phosphoenolpyruvate-protein phosphotransferase YPN_0276 344077 - 343586 - | hypothetical protein YPN_0277 344668 - 344378 - | autoinducer-2 (AI-2) modifying protein LsrG YPN_0278 345607 - 344732 - | aldolase TERM 379 345204 - 345184 - G 78 -12.5 -3.0094 | CCGTACCGATATACA CCTGTGCGG CGA CCGCGCAGG CATTGAGCCGTACAG TERM 380 345496 - 345481 - G 71 -5.4 -4.56597 | gap 1, opp_overlap 345481, overlap 345482 TTTTCGGGTTAAAAA TCCGCGC CAG GCG-GGA TTGCATTCCCCAATC YPN_0279 346682 - 345663 - | periplasmic solute-binding protein YPN_0280 347742 - 346741 - | ABC transporter permease protein YPN_0281 348794 - 347739 - | ABC transporter permease protein YPN_0282 350371 - 348788 - | ABC transporter ATP-binding protein TERM 381 349351 - 349368 + g 79 -9.1 -4.26076 | opp_overlap 349346, overlap 349363 AATACACTAAGCCCG CCGCCAG GCGA TTGGCGG TTTTCATCGCCGTGA YPN_0283 350792 - 350481 - | hypothetical protein TERM 382 350814 - 350826 + GH 70 -3.3 -4.77567 | overlap 350813 AGAGGAACTGCTCGC TCGCG TTG CGTGG TTTTATTATCACGAT YPN_0284 350791 - 350940 + | hypothetical protein YPN_0285 351023 - 351703 + | transcriptional repressor YPN_0286 351874 - 353466 + | autoinducer-2 (AI-2) kinase TERM 383 353584 - 353550 - f 100 -10.7 -4.29928 | gap 1, opp_overlap 353567 AATTAATAGCGAAAA GCGGCCAGC-TTGCGC TTCG GGGCAATGCTCGCCGC CGTCACGTGCTGCGT TERM 384 354159 - 354123 - g 70 -8 -3.79747 | overlap 354145 GCATGCAGGATTAAA GGCGCAAATCAGTG GCGAAAAAG CACTGTTTAGCGCC CTAAAAAAACAACAT TERM 385 354215 - 354227 + G 71 -6.9 -4.15044 | ATCAATGGCGGGCTG CGGCG TAT TGCCG TTTGTTAAAACCCAC YPN_0287 353782 - 354975 + | lipopolysaccharide core biosynthesis protein TERM 386 355125 - 355143 + G 70 -4.6 -4.59414 | CCAACGAATAATCAG CTAATGAG TGT TTCATTGG TTTTGATTATTATCA TERM 387 355856 - 355867 + G 73 -5.8 -4.5442 | TAATTCCTCCATGGG GCAG CGTT CTGC TTTTGTGGTTGAAGC YPN_0288 355023 - 356255 + | O-antigen biosynthesis protein TERM 388 356364 - 356338 - f 70 -7.2 -3.74872 | gap 1, opp_overlap 356347, overlap 356339 AGGCAGGGGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATA TERM 389 356465 - 356485 + F 100 -14 -3.67976 | TTTTTTGTTTAGCCG CGGCACCC TTTAT GGGTGCCG TTTAACGTTAATGGC YPN_0289 357065 - 357298 + | hypothetical protein YPN_0290 357350 - 358432 + | lipoprotein TERM 390 359929 - 359917 - g 79 -5.5 -4.93365 | TTCCAGAACCAAAAA CAGCC TGA AGCTG ATGCGGATAAGCCGG TERM 391 359966 - 359950 - g 70 -8.7 -3.56099 | opp_overlap 359950 359949 359940, overlap 359940 359953 GATAAGCCGGTTAAA CAACCGT ATG ACGGCTG GTTATTCCGCTATTA TERM 392 360242 - 360252 + G 74 -8.2 -3.9712 | CAACCATAGGTCAGG GCGC AAT GCGC TTTATGCTGACCTAC YPN_0291 358432 - 361518 + | multi-drug efflux protein TERM 393 361558 - 361581 + T 100 -11 -5.75342 | TAAAAGTAATTTCAG CAGCCCCG GTCAGTCA CGGGGCTG TTTTTTTTGACGAAC YPN_0292 362211 - 361879 - | hypothetical protein YPN_0293 362621 - 362358 - | hypothetical protein YPN_0294 363014 - 364099 + | pectinesterase YPN_0295 365812 - 364640 - | HmsT protein TERM 394 366301 - 366315 + G 83 -5.6 -5.1356 | AGCATGTTGTACCAC GTGCGG TTG CGGCAC TTTTTGTTACTGCCA YPN_0297 366106 - 366393 + | hypothetical protein rsmC 367949 - 366906 - | 16S ribosomal RNA m2G1207 methyltransferase TERM 395 367030 - 367002 - G 77 -9.5 -3.72576 | TTCGTGGCTACCAAA TGCGGCATCCAGC AAG GCAGGATACGGCA GGAAGGAGTTCGCTA TERM 396 367843 - 367857 + g 70 -10 -3.24924 | opp_overlap 367842 367843, overlap 367841 CCGGCTGCATCAAAT TGCGCT GGC AGCGCA TCTTGTAAATCACCG TERM 397 368375 - 368392 + GH 75 -8.4 -3.87815 | opp_overlap 368368 368375 GTGCACAATTACATA GCCCAG AATTAG CTGGGC TTTATCAAGATGCGG YPN_0299 368062 - 368499 + | DNA polymerase III subunit psi TERM 398 368559 - 368535 - gf 80 -4.2 -5.09895 | CATGGACGGAAAAAA CGTTCGCC AGTAATCAG GGCGACCG GTACCTCAATTTTAA rimI 368402 - 368887 + | ribosomal-protein-alanine N-acetyltransferase TERM 399 368868 - 368892 + F 84 -3.6 -5.43329 | gap 2, opp_overlap 368857, overlap 368869 AAGATGCCATTATGA TGGCG-T-TGCC AAT GGCATAGCGCCG TTTTATTTTGTTTTT TERM 400 369284 - 369258 - g 82 -6.6 -4.81851 | opp_overlap 369269, overlap 369262 369263 ATGGAAATGGAAAAA CAACGCGGTA TCTCCAT TACCACGTCG GTAATGCAGTTTCCG TERM 401 369519 - 369495 - g 79 -9.3 -4.2461 | ACCTTTATGAACAAA TTGGACCGCGA AAT TCGTGATCCAA TGGAAGTTCTGGATG prfC 369066 - 370655 + | peptide chain release factor 3 YPN_0302 370982 - 371596 + | periplasmic protein TERM 402 371714 - 371735 + F 72 -8 -3.82946 | opp_overlap 371713 371714 AGAGCCAAATGAAAG GGTGTCTG TTTAAT CAGGCACC TTATCTTTAAACTGG YPN_0303 371763 - 371924 + | hypothetical protein YPN_0304 372001 - 373269 + | hypothetical protein YPN_0305 373285 - 374094 + | metalloenzyme TERM 403 374377 - 374351 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 374360, overlap 374352 374367 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 404 374378 - 374352 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 374360, overlap 374351 374367 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPN_0306 374629 - 375900 + | Na+ dependent nucleoside transporter-family protein TERM 405 375931 - 375909 - f 83 -12.1 -2.61383 | opp_overlap 375908, overlap 375908 ACTGTGATGTATAAG GTGCCGTTT TTGTC AAACGGCAC ATGCTATCAGGCGTA TERM 406 375983 - 375957 - f 79 -11 -3.15544 | opp_overlap 375942 GCGTATTCTCACCAA TACGCTATTCTT GAT ACGAATAGCGTA ATCGGGGCCAATAGA TERM 407 376096 - 376081 - f 76 -7.6 -4.21439 | TAATGTGAAGATAAA CACATC TCAT GATGTG CTAACGTGCTCAAAT YPN_0307 376484 - 377281 + | deoxyribose-phosphate aldolase YPN_0308 377309 - 377944 + | hypothetical protein YPN_0309 377848 - 378720 + | thymidine phosphorylase YPN_0310 378852 - 380075 + | phosphopentomutase deoD 380200 - 380919 + | purine nucleoside phosphorylase TERM 408 380957 - 380992 + T 79 -7.6 -4.31293 | overlap 380961 TCCAGCGGTTTTTTC TTTCTTCAGCGGTAGA GATC TCTGCCGCTGAATTGA TTTATTCCTCTCTGA TERM 409 380961 - 380988 + T 100 -15 -3.71527 | overlap 380957 GCGGTTTTTTCTTTC TTCAGCGGTAGA GATC TCTGCCGCTGAA TTGATTTATTCCTCT YPN_0312 381732 - 381031 - | hypothetical protein TERM 410 381772 - 381790 + H 73 -8.8 -3.51597 | overlap 381773 CCTGCATACTTGATG TTGCTGCG TGA CGCAGCGG TTCTGATTCACCCTT TERM 411 381773 - 381789 + H 71 -10.1 -2.70476 | overlap 381772 CTGCATACTTGATGT TGCTGCG TGA CGCAGCG GTTCTGATTCACCCT serB 381964 - 382944 + | phosphoserine phosphatase TERM 412 383821 - 383808 - g 76 -5.2 -4.87665 | GCGTAGCCACAAAAA CCGC TTTGGT GCGG TTAACGAACTGGGTG YPN_0314 383032 - 384414 + | DNA repair protein RadA TERM 413 384524 - 384537 + F 71 -4.5 -4.74052 | TAATAGTGCCAATCC CGCAG CATA CTGTG TTATTTTTGTTTAGT TERM 414 384631 - 384615 - g 73 -2.9 -4.93547 | overlap 384616 GCAATTAAGCAAAAA GGCTGCA CCT TACAGCA GGTGGCTGAGGCCAG YPN_0315 384573 - 385844 + | nicotinamide-nucleotide adenylyltransferase TERM 415 385945 - 385917 - f 83 -11.9 -2.84634 | overlap 385920 385930 CTGGATATCATCACA TGAGCCGAATA TACTGGC TATTCGGCTCA CCAAATGAGCCGAAT TERM 416 385976 - 385920 - f 76 -10.9 -2.67992 | overlap 385917 385930 385951 GATATCATCACATGA GCCGAATATACTGGCTATTCGGCTCAC CAA ATGAGCCGAATAATGAGGCTAATCGGC TCACTCTCCGGTTGG TERM 417 385966 - 385930 - f 72 -9.5 -3.09289 | overlap 385917 385920 385951 CATGAGCCGAATATA CTGGCTATTCGGCTCAC CAA ATGAGCCGAATAATGAG GCTAATCGGCTCACT TERM 418 385979 - 385951 - f 73 -8.2 -3.72695 | overlap 385930 385920 ATTCGGCTCACCAAA TGAGCCGAATAA TGAGG CTAATCGGCTCA CTCTCCGGTTGGGAG YPN_0316 386001 - 387131 + | hypothetical protein TERM 419 387129 - 387158 + T 70 -9.3 -2.88861 | opp_overlap 387135, overlap 387134 387135 GCGAAATACCCTGAC TAAAAAGGCCTGC GATT GCAGGCCCTTCTA TCTGTCAGGCTACTA TERM 420 387134 - 387153 + T 78 -9.2 -3.64198 | opp_overlap 387135, overlap 387129 387135 ATACCCTGACTAAAA AGGCCTGC GATT GCAGGCCC TTCTATCTGTCAGGC TERM 421 387152 - 387135 - T 100 -12.7 -4.72986 | opp_overlap 387134 387129 387135 TACCCTGACTAAAAA GGCCTGC GATT GCAGGCC CTTCTATCTGTCAGG TERM 422 387135 - 387152 + T 89 -12.7 -2.78197 | opp_overlap 387135, overlap 387134 387129 TACCCTGACTAAAAA GGCCTGC GATT GCAGGCC CTTCTATCTGTCAGG YPN_0317 388422 - 387277 - | ATPase TERM 423 388175 - 388189 + gT 89 -2.1 -5.7946 | gap 1 TCAGAAGAGGCTTCT TGCGCC AGAC GG-GCA TTTTTTTGTTCCAGC YPN_0318 388940 - 388308 - | hypothetical protein TERM 424 389109 - 389088 - R 90 -10.9 -4.05926 | GAATAAAGGCAGAAA CCGGTTTAC AGCC GCAAACCGG TAAATAAAGGACGTT YPN_0319 389620 - 389123 - | lipoprotein YPN_0320 390912 - 389635 - | hypothetical protein TERM 425 390578 - 390610 + g 78 -10 -3.90766 | TGATGGATAGGCCCA TCGTCAGGTAGC GCCCAGTAA GCTATCTGACGA TTATGTTTATCAATG TERM 426 390715 - 390702 - G 70 -3.1 -4.77036 | gap 1 CGTTATCACCAAAAA CGACGG CGG CC-TCG GTGGTATAACTGATG YPN_0321 391532 - 390909 - | hypothetical protein TERM 427 391649 - 391669 + r 72 -6.3 -4.34263 | overlap 391643 391647 391659 391661 ATATCATCGTAAATT TGAGATTTA TCT TAAATCTTA TTTATGTTATTGAAA TERM 428 391716 - 391700 - R 84 -2.9 -5.59879 | opp_overlap 391700 TAGAAATATAAAAAA CCCGA CTGTTTT CCGGG TTTTTGTCAGGTAGT TERM 429 391856 - 391886 + r 100 -15.4 -5.1523 | opp_overlap 391835 391856 TTATTTACCTCAAAA GCCCCGGAGCTG GGCTGGA CTGCTCCGGGGC TTTTTCTCTTCTGAC TERM 430 391886 - 391856 - R 100 -15.4 -4.14739 | opp_overlap 391856, overlap 391835 TTATTTACCTCAAAA GCCCCGGAGCTG GGCTGGA CTGCTCCGGGGC TTTTTCTCTTCTGAC YPN_0322 394633 - 391907 - | cation-transporting P-type ATPase TERM 431 394493 - 394510 + g 70 -3.3 -4.7629 | overlap 394489 394495 GGGACCATATTGCGC CAGGCGC TCTT GTGCCTC TTTTTGGCTTAATCC YPN_0323 395203 - 397122 + | lytic murein transglycosylase YPN_0324 397377 - 397769 + | Trp operon repressor YPN_0325 398308 - 397766 - | NTPase TERM 432 398333 - 398363 + H 71 -4.8 -4.65512 | opp_overlap 398333 398332, overlap 398328 GAATATCCTTTAAAG CCTATCTAAAATAG GTT TTATCTCAGATAGG TTTTGTGCTTATTTT YPN_0326 398402 - 399049 + | phosphoglycerate mutase YPN_0327 399912 - 399046 - | right origin-binding protein YPN_0328 400138 - 400605 + | hypothetical protein TERM 433 400732 - 400755 + T 70 -7.4 -3.76607 | opp_overlap 400734, overlap 400734 GATATAAAAACAAAA AAGCCAGCAT CTGT GTGCTGGCTC TTTCCGTCTCTATTC TERM 434 400753 - 400734 - T 100 -9.3 -5.98675 | opp_overlap 400732 400734 TATAAAAACAAAAAA GCCAGCA TCTGTG TGCTGGC TCTTTCCGTCTCTAT TERM 435 400734 - 400753 + T 78 -10 -3.45632 | opp_overlap 400734, overlap 400732 TATAAAAACAAAAAA GCCAGCAT CTGT GTGCTGGC TCTTTCCGTCTCTAT YPN_0329 401495 - 400779 - | two-component response regulator YPN_0330 401767 - 401594 - | hypothetical protein TERM 436 402506 - 402528 + H 100 -12 -6.11644 | opp_overlap 402506 AAACAATAGAAAAAA GCCCGCAC CTAGACA GTGCGGGC TTTTTTTTTCAATCA TERM 437 402528 - 402506 - H 100 -12.7 -5.57729 | opp_overlap 402506 AAACAATAGAAAAAA GCCCGCACC TAGAC AGTGCGGGC TTTTTTTTTCAATCA thrA 402599 - 405058 + | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 438 405341 - 405362 + G 71 -10.9 -3.13164 | gap 1 ATATGCCGATCGGTT CAGG-GCTGG GTT CCAGCGCCTG TTCAGTGGTTGCCGG YPN_0332 405061 - 405990 + | homoserine kinase TERM 439 406160 - 406175 + G 73 -5.4 -4.73613 | gap 1 TTGTGACCCGTAGTA GCCG-CA TTC TGTCGGC TTTTATTGGTAGTGA TERM 440 407231 - 407259 + G 70 -4.6 -4.74801 | TGCTATCCCATGATT TGCCCGCA GACTTTGCACAAA TGCGGGCA TTTTTGATGGCATTG YPN_0333 405994 - 407283 + | threonine synthase YPN_0334 408879 - 408100 - | hypothetical protein TERM 441 410070 - 410053 - g 100 -7 -5.32882 | CAGTACTACAAAAAA CACGGT TATAAG ACCGTG GTGATGGGTGCAAGC YPN_0335 409408 - 410361 + | transaldolase B TERM 442 410419 - 410404 - f 74 -10.4 -2.73364 | opp_overlap 410404 TCGGTATCTGAATGA GGTGGC GCAA GCCACC TTTTTTATTGCCGAT TERM 443 410404 - 410419 + F 100 -10.4 -5.45652 | opp_overlap 410404 TCGGTATCTGAATGA GGTGGC GCAA GCCACC TTTTTTATTGCCGAT YPN_0336 410405 - 410563 + | hypothetical protein mogA 410649 - 411236 + | molybdenum cofactor biosynthesis protein TERM 444 412394 - 412404 + G 74 -6.8 -4.37092 | TGATGCTGGCGATGT CGAC ATG GTCG TTTTATCACACCAAT TERM 445 412559 - 412570 + G 78 -5.8 -4.84363 | opp_overlap 412558 CTTTCTCGTACAATG TGGC CTAT GCCA TTTTTGGTGGTTTAA YPN_0338 411364 - 412752 + | transport protein TERM 446 412765 - 412807 + T 78 -5.3 -5.04597 | gap 2, opp_overlap 412771, overlap 412766 412771 TAAGTCAATTCACTT TA-AAAAGCCCATAA-TTATT ATC AATAAATTATGGGCTTTTATC TTTTTCTCTATACCT TERM 447 412766 - 412805 + T 91 -10.4 -4.14422 | gap 1, opp_overlap 412771, overlap 412765 412771 AAGTCAATTCACTTT AAAAAGCCCATAA-TTATT ATC AATAAATTATGGGCTTTTA TCTTTTTCTCTATAC TERM 448 412800 - 412771 - T 100 -10.3 -4.63184 | gap 1, opp_overlap 412766 412765 412771 AATTCACTTTAAAAA GCCCATAA-TTATT ATC AATAAATTATGGGC TTTTATCTTTTTCTC TERM 449 412771 - 412800 + T 100 -10.3 -5.02287 | gap 1, opp_overlap 412771, overlap 412766 412765 AATTCACTTTAAAAA GCCCATAA-TTATT ATC AATAAATTATGGGC TTTTATCTTTTTCTC YPN_0339 415269 - 412822 - | hypothetical protein TERM 450 414976 - 415003 + g 80 -2.1 -5.48163 | gap 1, opp_overlap 414976 ATTATATAGTCCAAA TGATTTCATACC GTCTA GGT-TGACATCA TTTTTTAATTTCTTT TERM 451 415524 - 415486 - R 100 -20 -4.55798 | opp_overlap 415486 GAGTGGAAAGTAAAA GCACCTTGAATATTAAAT TTT ATCTAATATTCAAGGTGC TGTGTAATATAAGCT TERM 452 415486 - 415524 + r 100 -17.8 -2.97925 | opp_overlap 415486 GAGTGGAAAGTAAAA GCACCTTGAATATTAAAT TTT ATCTAATATTCAAGGTGC TGTGTAATATAAGCT YPN_0340 416168 - 415557 - | hypothetical protein TERM 453 415974 - 415988 + g 90 -5.7 -5.31275 | opp_overlap 415965 GGTAAATGCGGTGGC GGCAA ATGTG TTGCC TTTTTTATACTCCAA TERM 454 416094 - 416080 - G 71 -7.1 -4.16842 | opp_overlap 416080 CTCAGTGGGAAGAAA CCTGC GTTGT GCAGG TTTAGCAAGACGGTA TERM 455 416141 - 416129 - G 75 -10.5 -3.39668 | overlap 416121 TCCCAAAGCCCATAA GGCCC AAT GGGCC AGGATTCGCCAACTT TERM 456 416880 - 416870 - g 74 -2.4 -5.12707 | overlap 416861 416871 416872 TTAAAGGCCAAAAAA TGGC ACC GCCG CAGATCTCTGCTGAA YPN_0341 416542 - 418452 + | molecular chaperone DnaK TERM 457 418538 - 418501 - f 100 -15.5 -3.53224 | opp_overlap 418499, overlap 418504 TACTGTTGCTGGAAA CCAGCACGGGCGTCGAG GAAA CTCTACGCCCGTGCACG CATGTTAAGGGTAGG TERM 458 418535 - 418504 - f 100 -20.2 -2.90496 | opp_overlap 418499, overlap 418501 TGTTGCTGGAAACCA GCACGGGCGTCGAG GAAA CTCTACGCCCGTGC ACGCATGTTAAGGGT TERM 459 419653 - 419640 - g 83 -3.1 -5.40072 | TGCTGGTGAAAAAAA TAGCC CGCG AGCTA AAAGTTTCTTAGATG YPN_0342 418564 - 419703 + | chaperone protein DnaJ TERM 460 419743 - 419784 + F 74 -9.7 -3.12803 | opp_overlap 419745 419754, overlap 419745 419754 419779 CAGCTAATAAAGTAA AATGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTATC TGTTGAATATGGATA TERM 461 419782 - 419745 - f 75 -5.7 -4.67942 | opp_overlap 419743 419745 419754 419779, overlap 419754 GCTAATAAAGTAAAA TGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTA TCTGTTGAATATGGA TERM 462 419745 - 419782 + F 93 -12.3 -3.12142 | opp_overlap 419745 419754, overlap 419743 419754 419779 GCTAATAAAGTAAAA TGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTA TCTGTTGAATATGGA TERM 463 419773 - 419754 - f 77 -6.4 -4.67692 | opp_overlap 419745 419743 419754, overlap 419745 GTAAAATGAAAGAAA TCCTCGGT TGAT ATCGAGGA TTTTTTTTATCTGTT TERM 464 419754 - 419773 + F 100 -8.6 -6.08563 | opp_overlap 419754 419745, overlap 419745 419743 GTAAAATGAAAGAAA TCCTCGGT TGAT ATCGAGGA TTTTTTTTATCTGTT YPN_0343 419946 - 421130 + | sodium-proton antiporter TERM 465 421154 - 421183 + F 100 -13.7 -3.2048 | CACGTTATTGATTCA GCATTGCTGCC CAAGCGCA GGCAGCAATGC TTGGTGGAATTTAAA nhaR 421260 - 422159 + | transcriptional activator NhaR TERM 466 422268 - 422239 - T 100 -14.5 -3.08344 | opp_overlap 422245 422247, overlap 422247 GCCAAACGATAGAGA TAAAAAAACCGGC CTAA GCCGGTCTTTTTA CAAGCACTCAATGTC TERM 467 422245 - 422262 + T 76 -6.9 -4.57073 | opp_overlap 422239 422247, overlap 422247 CGATAGAGATAAAAA AACCGGC CTAA GCCGGTC TTTTTACAAGCACTC TERM 468 422247 - 422260 + T 81 -9.5 -3.90048 | opp_overlap 422247 422239, overlap 422245 ATAGAGATAAAAAAA CCGGC CTAA GCCGG TCTTTTTACAAGCAC TERM 469 422260 - 422247 - T 100 -9.5 -5.77988 | opp_overlap 422245 422247, overlap 422239 ATAGAGATAAAAAAA CCGGC CTAA GCCGG TCTTTTTACAAGCAC rpsT 422553 - 422290 - | 30S ribosomal protein S20 TERM 470 422391 - 422406 + g 76 -6.2 -4.62783 | GATCCACGATTGGTT GCATTT CATT AAATGC TTTTTGCGCTGCGTC TERM 471 423344 - 423371 + G 88 -10.6 -4.15565 | gap 1 CGGTAGGTGATGACT TCCGCTTTGGCGC AGG GCGCCAGGG-GGA TTTTCAACTACTGCA YPN_0346 422968 - 423906 + | bifunctional riboflavin kinase/FMN adenylyltransferase ileS 423938 - 426754 + | isoleucyl-tRNA synthetase TERM 472 426864 - 426884 + G 76 -4.7 -5.03314 | overlap 426865 CCACTTTGCTCTGTA TGAATCGGT GCC ACTGATTCC TTTTTTCAACCTAAC lspA 426754 - 427263 + | lipoprotein signal peptidase YPN_0349 427256 - 427789 + | FKBP-type peptidyl-prolyl cis-trans isomerase ispH 427770 - 428723 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 473 428800 - 428783 - g 70 -8.4 -3.767 | opp_overlap 428778 TATTTACTGACGAAA GCAGCC CTTTGC GGCTGC TTGAGGTTATTGATA YPN_0351 428752 - 428916 + | hypothetical protein TERM 474 428935 - 428952 + F 100 -8.4 -5.55769 | overlap 428928 TGTCAGCAGTCTGAA GCAGCC CTTTGT GGCTGC TTTTTTATTGTGCCC TERM 475 428974 - 428992 + F 100 -16 -3.07307 | opp_overlap 428974 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 476 428992 - 428974 - f 100 -16 -4.37092 | opp_overlap 428974 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0352 429105 - 429563 + | transposase for the IS1541 insertion element TERM 477 429641 - 429665 + F 100 -9.9 -4.44046 | opp_overlap 429644, overlap 429643 429644 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGGGGTAAG TERM 478 429643 - 429663 + F 100 -12.5 -3.82628 | opp_overlap 429644, overlap 429641 429644 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGGGGTA TERM 479 429644 - 429662 + F 100 -16 -2.88854 | opp_overlap 429644, overlap 429643 429641 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGGGGT TERM 480 429662 - 429644 - f 100 -16 -4.8048 | opp_overlap 429644 429643 429641 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGGGGT YPN_0353 430016 - 430837 + | dihydrodipicolinate reductase TERM 481 430850 - 430867 + F 82 -5.6 -4.93296 | opp_overlap 430850 TAATGCTTTAAATTA CAACCA GTGATG TGGTTG TTTTTATCATAATCA TERM 482 430893 - 430911 + F 85 -2.4 -5.80951 | opp_overlap 430893 AATCATTTGATAATA GGGCAATA TTT TATTATCC TTTTTTATTTTAAAT TERM 483 432050 - 432029 - g 71 -10.9 -3.05596 | CATCTTCTTATCCAA TGGTCCTGG GGAT CCAGAACCA TGCGATTACGCGATC YPN_0354 431310 - 432485 + | carbamoyl phosphate synthase small subunit TERM 484 432544 - 432526 - g 74 -2.2 -5.07275 | opp_overlap 432536 432538 432543, overlap 432530 GTACAGATATAAAAA GCATCCTG ATT CTGGGCGC AGGCCCGATTGTTAT TERM 485 433459 - 433440 - g 74 -10 -3.53444 | GCACTGGCCTCTAAA GCAACCGG TTTC CCGATTGC CAAGATTGCCGCCAA TERM 486 433468 - 433482 + G 70 -11.4 -2.52896 | CGATTGCCAAGATTG CCGCCA AAC TGGCGG TCGGTTACACACTGG carB 432501 - 435734 + | carbamoyl phosphate synthase large subunit TERM 487 435787 - 435760 - T 79 -8.4 -4.07885 | opp_overlap 435764, overlap 435764 CATCCGTGGCGAAAA TCAAGGGCGATG GCAA CATCGCCCTTTT TACGTTCGTAGCTTA TERM 488 435764 - 435783 + T 100 -13.6 -4.7629 | opp_overlap 435760 435764 CGTGGCGAAAATCAA GGGCGATG GCAA CATCGCCC TTTTTACGTTCGTAG TERM 489 435783 - 435764 - T 100 -13.6 -3.66908 | opp_overlap 435764, overlap 435760 CGTGGCGAAAATCAA GGGCGATG GCAA CATCGCCC TTTTTACGTTCGTAG YPN_0356 436639 - 435962 - | LysE type translocator TERM 490 436758 - 436773 + H 70 -2.6 -4.93296 | CCGATGTGATTCAGT TCATTG AAAT TAATGA TTTTTATCCTGATGG YPN_0357 436900 - 437700 + | hypothetical protein YPN_0358 437697 - 438152 + | hypothetical protein TERM 491 438374 - 438425 + G 77 -11 -3.37796 | GCTATGCCATGGCAT TTACCGGCTGATTTAGCGTGGTTC AAAC GTAACACGTTAAATAAACCGGTAA TTATGGGTCGTAAGA folA 438302 - 438784 + | dihydrofolate reductase TERM 492 438849 - 438814 - f 74 -9.9 -3.13368 | gap 1, opp_overlap 438819, overlap 438812 438808 438819 438821 ACATCAAAACAATTA GCATACAGGCCCATTA GGTAA TAATGGGCCTGTTT-C ATTGTGCCCAGAAAA TERM 493 438819 - 438845 + F 100 -15.3 -3.9941 | opp_overlap 438819 438814 438812 438808 438821 AAAACAATTAGCATA CAGGCCCATTA GGTAA TAATGGGCCTG TTTCATTGTGCCCAG TERM 494 438845 - 438819 - f 100 -15.3 -2.91094 | opp_overlap 438819, overlap 438814 438812 438808 438821 AAAACAATTAGCATA CAGGCCCATTA GGTAA TAATGGGCCTG TTTCATTGTGCCCAG TERM 495 438843 - 438821 - f 86 -12.1 -2.9913 | opp_overlap 438819, overlap 438819 438814 438812 438808 AACAATTAGCATACA GGCCCATTA GGTAA TAATGGGCC TGTTTCATTGTGCCC TERM 496 438865 - 438883 + F 100 -16 -3.07307 | opp_overlap 438865 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 497 438883 - 438865 - f 100 -16 -4.37092 | opp_overlap 438865 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0360 438996 - 439454 + | transposase for the IS1541 insertion element TERM 498 439528 - 439560 + T 100 -11.3 -4.08767 | opp_overlap 439535 439557, overlap 439532 439534 439535 439557 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTAGAAAAATAAA TERM 499 439532 - 439556 + T 100 -9.9 -4.64861 | opp_overlap 439535, overlap 439528 439534 439535 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTAGAAAAA TERM 500 439534 - 439554 + T 100 -12.5 -3.93868 | opp_overlap 439535, overlap 439532 439528 439535 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTAGAAA TERM 501 439553 - 439535 - T 100 -16 -4.8048 | opp_overlap 439534 439532 439528 439535 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTAGAA TERM 502 439535 - 439553 + T 100 -16 -2.95598 | opp_overlap 439535, overlap 439534 439532 439528 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTAGAA TERM 503 439557 - 439575 + T 72 -6.2 -4.34737 | opp_overlap 439557, overlap 439528 CTATGCCGGAGGATA TTTATTTT AGA AAAATAAA TTTATTACTTAATGG YPN_0361 439722 - 439558 - | hypothetical protein YPN_0362 439989 - 440210 + | hypothetical protein YPN_0363 440337 - 440801 + | hypothetical protein TERM 504 440853 - 440824 - T 77 -10.9 -2.78706 | opp_overlap 440829, overlap 440829 AATTATAGGTGAAAT CTAAAGACGCATA AGCT CATGCGTCTTTAA TTAGCGTCTTTACAA TERM 505 440848 - 440829 - T 75 -8.6 -3.85165 | opp_overlap 440829, overlap 440824 TAGGTGAAATCTAAA GACGCATA AGCT CATGCGTC TTTAATTAGCGTCTT TERM 506 440829 - 440848 + T 74 -7.9 -3.93026 | opp_overlap 440829 440824 TAGGTGAAATCTAAA GACGCAT AAGCTC ATGCGTC TTTAATTAGCGTCTT apaH 441760 - 440891 - | diadenosine tetraphosphatase apaG 442154 - 441777 - | ApaG ksgA 442986 - 442168 - | dimethyladenosine transferase pdxA 443983 - 442979 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 507 443899 - 443869 - GR 95 -14.1 -2.62396 | GATCCGCGCAGACTA CCAGCTCAACAGG CCAAT CCTGTTGAGCCAG AGTGATGGCTAAATC YPN_0368 445262 - 443958 - | peptidyl-prolyl cis-trans isomerase SurA YPN_0369 447708 - 445330 - | organic solvent tolerance protein djlA 447857 - 448690 + | DNA-J like membrane chaperone protein YPN_0371 449608 - 448988 - | ribosomal large subunit pseudouridine synthase A YPN_0372 449652 - 449777 + | hypothetical protein TERM 508 450675 - 450701 + T 100 -15.4 -3.16881 | opp_overlap 450677 ATATATTTGGGGTAA TAGTGTCCATTA AGA TAATGGACACTA TTCGTCAGATACGTG TERM 509 450699 - 450677 - T 100 -13.6 -3.02263 | opp_overlap 450675 ATATTTGGGGTAATA GTGTCCATTA AGA TAATGGACAC TATTCGTCAGATACG YPN_0373 451574 - 450831 - | hypothetical protein YPN_0374 451919 - 452917 + | hypothetical protein YPN_0375 452928 - 453488 + | hypothetical protein TERM 510 453620 - 453634 + G 70 -11.4 -2.52015 | overlap 453619 TCCGCCACAGTGCGC CGTGCC ATA GGCACG CTTGCTGCGTATGCC TERM 511 454264 - 454278 + G 70 -4.3 -4.67038 | opp_overlap 454264, overlap 454259 GTATGGTGCCAAAAA TCATC CTATT GATGA TTTTGCTTTTGAAGA YPN_0376 453488 - 454999 + | hypothetical protein TERM 512 455022 - 454997 - f 73 -5.5 -4.74598 | gap 1, opp_overlap 455000 455005 GAAAGCGAAAAGAAA TAAGCGCTGTGA ATA TCACT-CGCTTA TTAGAGGGGGAATAT TERM 513 455112 - 455096 - f 76 -10.9 -2.72991 | GTACATTTTTAATGA GGCAACT TTG AGTTGCC GAATACTGATTTAAC YPN_0377 455162 - 455680 + | hypothetical protein YPN_0378 455754 - 456197 + | hypothetical protein YPN_0379 456230 - 458074 + | hypothetical protein YPN_0380 458067 - 459050 + | hypothetical protein YPN_0381 459068 - 461656 + | Clp ATPase YPN_0382 461760 - 464108 + | hypothetical protein YPN_0383 464121 - 466340 + | hypothetical protein TERM 514 466428 - 466468 + G 82 -6.9 -4.88795 | opp_overlap 466437 GATTATTGGCCGGCA CTTTACACAGCGTCAGTTG CAG CAGTTAACGCTGTCTGAGG TTTATTTTATTCAAT YPN_0384 466366 - 467469 + | hypothetical protein YPN_0385 467462 - 468079 + | hypothetical protein YPN_0386 468085 - 468450 + | hypothetical protein TERM 515 468664 - 468647 - g 79 -9.1 -4.18488 | opp_overlap 468649 ATTGAGCTGAATAAA GAGGGGT GGTC ACCCCCC GGTTTGTATCAGGGG YPN_0387 468443 - 468934 + | putative lipoprotein TERM 516 469843 - 469831 - g 70 -4.8 -4.65895 | opp_overlap 469840 GTGTTGATGCAAAAA CAGG TACAC CCTG AGCAGTTGTTCCAAT YPN_0388 469054 - 470409 + | hypothetical protein YPN_0389 470406 - 472016 + | OmpA-family membrane protein YPN_0390 472025 - 475519 + | membrane protein YPN_0391 475541 - 475894 + | hypothetical protein TERM 517 475940 - 475918 - T 100 -13.5 -5.71712 | CGTCAGACAAAAAAA TATCCGGGG GAATG CCCCGGATA TCAGACTGCTGACAA TERM 518 476029 - 476003 - T 70 -7.2 -3.82218 | gap 1, opp_overlap 476012, overlap 476004 AGGCAGAGGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG YPN_0392 479056 - 476150 - | ATP-dependent helicase HepA TERM 519 478709 - 478671 - G 90 -11.7 -4.08216 | opp_overlap 478682 478683 TTACGGGCGCGAAAA CGCAGGGCAAAGCGATC CATGC GATCGATTTGACCGGCG AATAAGCGATCCTGT YPN_0393 481886 - 479517 - | DNA polymerase II TERM 520 480372 - 480346 - G 78 -3.7 -5.1101 | gap 2, overlap 480347 CGAGGATCGAAAAAA CGGCAGCCGCTGG AAC CCAGC-AC-GCCA TAAAAGGCATTCATA TERM 521 481068 - 481057 - G 71 -7.2 -4.09805 | CCATCAATAATTAAA CGCC CGGC GGCG GAAGCAAAGAAATGC TERM 522 482518 - 482541 + G 76 -8.1 -4.2074 | CCTTACCCAGTGTGA TTGGTGGCC TGACAT GGCCGCCGA TTTATCTCTTCCCCG YPN_0394 482082 - 482849 + | DedA family membrane protein thiQ 483628 - 482918 - | thiamine transporter ATP-binding subunit thiP 485234 - 483615 - | thiamine transporter membrane protein TERM 523 483843 - 483810 - GR 84 -10.9 -3.58905 | opp_overlap 483809 483808, overlap 483812 483822 ATCGCCGATAGATAA CACACTGGCAAAGGC CAGC GCCTGAGCCAGTGGG CGTTTCAGGGCGCGT TERM 524 483841 - 483812 - GR 89 -12.1 -3.37198 | opp_overlap 483809 483808, overlap 483810 483822 CGCCGATAGATAACA CACTGGCAAAGGC CAGC GCCTGAGCCAGTG GGCGTTTCAGGGCGC TERM 525 485192 - 485175 - GR 77 -10.5 -3.14931 | CCCAGCGGCCAGCAA CCCCGGC CATA GCCAGGG CGCGATTAACGGCTG tbpA 486190 - 485198 - | thiamine transporter substrate binding subunit TERM 526 485882 - 485904 + gr 74 -7 -4.30987 | opp_overlap 485881, overlap 485878 GTTACGGGTATCAAC CTGGCTTG GGGTAAA CAAGCCGG TTTGTTCTGCCGCCT TERM 527 485953 - 485963 + gr 74 -4.6 -4.75174 | ACCCTAAAATCACAT CGGC CTG GCTG TTTTTACCTTCCATC YPN_0398 488791 - 487130 - | transcriptional regulator SgrR TERM 528 488970 - 488991 + H 100 -8.7 -5.93252 | TGGTGTTTTTCACCA GCCAGTAGG TTTT TCTGCTGGC TTTTTTCTTTTTCCC TERM 529 489420 - 489431 + H 71 -4.4 -4.84359 | CACCATTATGATTAT GCTA ATAA TAGC TTTTTCTGGCGCTGG TERM 530 489982 - 489992 + G 80 -3.2 -5.31855 | GCTGATGTTTAGCAT TGCC GCC GGTA TTTTTGTTATTAGTG YPN_0399 489455 - 490636 + | hypothetical protein TERM 531 490736 - 490766 + T 86 -12 -3.20896 | gap 1, overlap 490734 490733 AGTTAAACGTGTTAC TTGTTGG-GCCGG TACGAC CCGGCACCAACAA TCTATTAGTTACTTA leuD 491479 - 490877 - | isopropylmalate isomerase small subunit TERM 532 491413 - 491426 + g 70 -8.1 -3.78022 | GCTTAGGGATAATCG CGTCG GTAT CGACG TTTGCTGCATCTAAC YPN_0401 492924 - 491494 - | isopropylmalate isomerase large subunit TERM 533 492425 - 492437 + g 70 -9.1 -3.64703 | ATGGTTTTGGCTCGC CCCTG CTT CAGGG TTTGGGTCGCCAACA TERM 534 492866 - 492882 + g 70 -2.9 -4.80882 | opp_overlap 492867, overlap 492867 GGGGCTTCATGCACA ATGTGCG CAT CGTACAA TTTTTGGTATAACGT YPN_0402 494017 - 492926 - | 3-isopropylmalate dehydrogenase YPN_0403 495582 - 494020 - | 2-isopropylmalate synthase TERM 535 495655 - 495623 - R 100 -11.3 -4.4009 | opp_overlap 495630, overlap 495627 495629 495630 GCTCAGCGGATAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 536 495651 - 495627 - R 100 -9.9 -4.77775 | opp_overlap 495630, overlap 495623 495629 495630 AGCGGATAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 537 495649 - 495629 - R 100 -12.5 -3.99938 | opp_overlap 495630, overlap 495627 495623 495630 CGGATAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 538 495648 - 495630 - R 100 -16 -2.98878 | opp_overlap 495630, overlap 495629 495627 495623 GGATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 539 495630 - 495648 + r 100 -16 -4.8048 | opp_overlap 495630 495629 495627 495623 GGATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_0404 496187 - 495729 - | transposase for the IS1541 insertion element TERM 540 496318 - 496300 - H 100 -16 -3.07307 | opp_overlap 496300 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 541 496300 - 496318 + H 100 -16 -4.36914 | opp_overlap 496300 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 542 496338 - 496357 + H 86 -10.6 -3.83155 | opp_overlap 496339, overlap 496339 CTGGGCACAAAAAAA ACCCGCGC ATTT GCGCGGGC TTGTTAATCTTGATG TERM 543 496339 - 496356 + H 95 -14.1 -2.8917 | opp_overlap 496339, overlap 496338 TGGGCACAAAAAAAA CCCGCGC ATTT GCGCGGG CTTGTTAATCTTGAT TERM 544 496356 - 496339 - H 100 -14.1 -5.93809 | opp_overlap 496339 496338 TGGGCACAAAAAAAA CCCGCGC ATTT GCGCGGG CTTGTTAATCTTGAT TERM 545 497121 - 497139 + H 72 -6.2 -4.35885 | opp_overlap 497114 497121 497120, overlap 497114 ATTATAATTAAAATT TTTATATT ACT AATATAAA TTTGTTGTGGTGGCT TERM 546 498191 - 498175 - g 80 -2.2 -5.39721 | opp_overlap 498175 TCATTAGATAAAAAA GGGTCA TTCAG TGAGCC TTATTACGACTCAAC leuO 497509 - 498465 + | leucine transcriptional activator YPN_0406 499036 - 500841 + | AMP-binding enzyme-family protein TERM 547 500860 - 500899 + F 100 -13.6 -3.5362 | overlap 500858 500862 GTTCACCATTCCTCC CCGCAGTGACCGGTGTTA AGTC TCACACTGGTCGCTGCTG TCTTTCTGACCGTTC TERM 548 500862 - 500897 + F 100 -14.8 -3.33798 | overlap 500860 500858 TCACCATTCCTCCCC GCAGTGACCGGTGTTA AGTC TCACACTGGTCGCTGC TGTCTTTCTGACCGT TERM 549 501232 - 501218 - f 75 -5.6 -4.64159 | opp_overlap 501220, overlap 501220 ACAAATAAGAATAAA GAGGCG TTG CGCCTT TCCTACAGAATATCG TERM 550 501220 - 501230 + F 73 -8.2 -3.73402 | opp_overlap 501218 501220 AAATAAGAATAAAGA GGCG TTG CGCC TTTCCTACAGAATAT TERM 551 501230 - 501220 - f 75 -8.2 -3.90009 | opp_overlap 501220, overlap 501218 AAATAAGAATAAAGA GGCG TTG CGCC TTTCCTACAGAATAT TERM 552 501749 - 501772 + G 77 -11 -3.36492 | gap 1 CCTTTTATCTGGCAT CCACTGG-CCG TCC CGGTCCGGTGG TTATCGACTTGCCAA YPN_0407 501301 - 503028 + | acetolactate synthase 3 catalytic subunit ilvH 503031 - 503525 + | acetolactate synthase 3 regulatory subunit TERM 553 503554 - 503574 + F 100 -13.3 -5.24129 | CGCTCTAATGATCGG GCTCAGCGC ATA GCGTTGAGC TTTTTTGTGCCCAGA TERM 554 503593 - 503611 + F 100 -16 -3.07307 | opp_overlap 503593 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 555 503611 - 503593 - f 100 -16 -4.36914 | opp_overlap 503593 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0409 503724 - 504182 + | transposase for the IS1541 insertion element TERM 556 504256 - 504288 + F 100 -11.3 -5.54403 | opp_overlap 504263, overlap 504262 504263 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTCTTATTTTTT TERM 557 504262 - 504282 + F 100 -12.5 -4.13123 | opp_overlap 504263, overlap 504256 504263 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTCTTA TERM 558 504281 - 504263 - f 100 -16 -4.8048 | opp_overlap 504262 504256 504263 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTCTT TERM 559 504263 - 504281 + F 100 -16 -3.05433 | opp_overlap 504263, overlap 504262 504256 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTCTT TERM 560 504638 - 504651 + F 74 -6.7 -4.33165 | overlap 504631 GGATGCTGGCTCTCG GCAGA GCGC TCTGC TTTTCATCACTTTAC TERM 561 504704 - 504720 + G 70 -9.3 -3.53012 | opp_overlap 504703 GAAACTGGATGAGAT CGCGCGC CTT GCGGGCG TTTCGCGCACAACGG YPN_0410 504687 - 505697 + | DNA-binding transcriptional regulator FruR TERM 562 505729 - 505712 - T 89 -11.3 -3.47322 | opp_overlap 505712 GTTCACTATAACGAA TCAGGGC ACCC GCCCTGA TTTTGATTGCTGACA TERM 563 505712 - 505729 + T 100 -11.3 -4.45544 | opp_overlap 505712 GTTCACTATAACGAA TCAGGGC ACCC GCCCTGA TTTTGATTGCTGACA YPN_0411 506268 - 505828 - | hypothetical protein TERM 564 505889 - 505877 - G 83 -5.5 -5.09173 | CAATATTCCAAAAAA TAGCC GTA GGCCA CCCCCATAACCATTG TERM 565 506717 - 506691 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 506700, overlap 506692 506707 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 566 506718 - 506692 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 506700, overlap 506691 506707 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPN_0412 507370 - 507828 + | cell division protein MraZ mraW 507831 - 508793 + | S-adenosyl-methyltransferase MraW YPN_0414 508790 - 509107 + | cell division protein FtsL TERM 567 509217 - 509237 + G 74 -6.8 -4.31085 | opp_overlap 509218, overlap 509218 GCGTCAGGAAGAACA AGCCAGCT TTATT AGCTGGCG TTTTGCGTTGCTGTG TERM 568 509218 - 509236 + G 71 -10.3 -3.17928 | opp_overlap 509218, overlap 509217 CGTCAGGAAGAACAA GCCAGCT TTATT AGCTGGC GTTTTGCGTTGCTGT TERM 569 509236 - 509218 - g 84 -10.3 -3.99374 | opp_overlap 509217 509218 CGTCAGGAAGAACAA GCCAGCT TTATT AGCTGGC GTTTTGCGTTGCTGT TERM 570 510400 - 510416 + G 70 -8.7 -3.60098 | opp_overlap 510400 510402 CGGTGGTCTGACATA GAGAGGG CCA CCTTCTC TTTCGGCTACGGGCT YPN_0415 509173 - 510936 + | penicillin-binding protein 3 murE 510923 - 512410 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase murF 512407 - 513783 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase mraY 513777 - 514859 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 571 515700 - 515730 + G 79 -11.3 -3.55622 | gap 2 CCGCCCTGGCATTAG CT-GATG-CCGTGGG TAT CCCACGGGCATCCAG TTTGAAAGCCTTGAC murD 514862 - 516178 + | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YPN_0420 516178 - 517380 + | cell division protein FtsW murG 517377 - 518447 + | N-acetylglucosaminyl transferase murC 518537 - 520060 + | UDP-N-acetylmuramate--L-alanine ligase ddl 520053 - 520973 + | D-alanine--D-alanine ligase TERM 572 521035 - 521022 - g 70 -3.1 -4.82901 | gap 1 TGCGGCGGAGAAAAA TGCAGC CCG GC-GCA GTAACGGGAGCCAAT TERM 573 521348 - 521336 - g 76 -7.7 -4.30014 | CGGATGAACTTAAAA TCCAC CTG GTGGA GTACGTGCCCTTCGC YPN_0424 520975 - 521802 + | cell division protein FtsQ ftsA 521829 - 523085 + | cell division protein FtsA TERM 574 523440 - 523407 - g 72 -8.1 -3.85522 | overlap 523409 AATTCAGCAGAAGAA GACCGTGAAGCTCTG CGTG CAGCGCTTGACGGTG CGGATATGGTCTTTA TERM 575 523438 - 523409 - g 77 -10.7 -3.50808 | overlap 523407 TTCAGCAGAAGAAGA CCGTGAAGCTCTG CGTG CAGCGCTTGACGG TGCGGATATGGTCTT YPN_0426 523158 - 524309 + | cell division protein FtsZ TERM 576 524488 - 524478 - g 79 -5.4 -5.04385 | CACACCGGTAAAAAA GTCA CGC TGAC AATGCGACCCGCGCC lpxC 524394 - 525329 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 577 525509 - 525546 + T 80 -11.4 -2.71731 | opp_overlap 525499 AGCTACTTATCACGC TTGGTTGCGTTGGC ACCCTCTCCG GCCAACGCAGCCAG TCGTTCCAAGATCAC YPN_0428 526020 - 525496 - | hypothetical protein YPN_0429 526049 - 526582 + | SecA regulator SecM TERM 578 526749 - 526729 - g 70 -4.7 -4.65895 | overlap 526732 CGCCGCATGCAAAAA GTAGTTGAT GTC ATCAACCGC ATGGAACCTGATATT TERM 579 527776 - 527766 - g 76 -6.8 -4.50661 | opp_overlap 527765 527766 AATCCAGAATGAAAA CCAG ACA CTGG CTTCTATCACTTTCC secA 526660 - 529374 + | preprotein translocase subunit SecA TERM 580 529421 - 529404 - f 100 -12.7 -4.21343 | opp_overlap 529400 529416, overlap 529416 TGTAATATAGATAAA GGGCGGT TAAT ACCGCCC TGAGGTTATTGACAA TERM 581 529499 - 529525 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 529488, overlap 529494 529500 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 582 529500 - 529526 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 529488, overlap 529494 529499 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 583 529586 - 529610 + F 89 -7.2 -4.97888 | gap 1, overlap 529589 GGTTTGTCAGCAGTC TGA-GGGCGGT TAAT ACCGCCCTTTA TTTTTAAGTTTTTTT TERM 584 529589 - 529606 + F 100 -12.7 -4.92828 | overlap 529586 TTGTCAGCAGTCTGA GGGCGGT TAAT ACCGCCC TTTATTTTTAAGTTT YPN_0431 529669 - 530055 + | nucleoside triphosphate pyrophosphohydrolase TERM 585 530093 - 530120 + T 100 -9.3 -5.24129 | gap 1, opp_overlap 530097 CCTACTTTATTTTAA TGGAGCAAGACG TCCGT CGT-TTGCTCCA TTTTTTGTGCCCAGA TERM 586 530157 - 530139 - T 100 -16 -4.36914 | opp_overlap 530139 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 587 530139 - 530157 + T 100 -16 -3.07307 | opp_overlap 530139 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0432 530301 - 530209 - | hypothetical protein YPN_0433 531096 - 530317 - | transposase/IS protein TERM 588 531015 - 531029 + g 77 -11.4 -3.3506 | overlap 531028 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_0434 532118 - 531096 - | transposase for insertion sequence IS100 TERM 589 532140 - 532122 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_0435 532311 - 532132 - | hypothetical protein TERM 590 532353 - 532331 - R 100 -8.5 -5.40072 | opp_overlap 532352 TCCCCCTTAAAAAAA TACCCTACC GGATG GATAGGGTA TCGCTGATATTAACT YPN_0436 532792 - 532397 - | hypothetical protein YPN_0437 533380 - 533096 - | hypothetical protein YPN_0438 533841 - 533377 - | hypothetical protein YPN_0439 534080 - 533775 - | hypothetical protein YPN_0440 534231 - 534085 - | hypothetical protein YPN_0441 534615 - 534235 - | hypothetical protein TERM 591 534809 - 534836 + r 91 -12 -3.4759 | overlap 534810 TGAGAGGAACGAGTT TGATACGGGGAG TCGA CTCCCCGTAGCG TTGATTATCCTAAGT TERM 592 534810 - 534835 + r 93 -13.3 -2.68072 | overlap 534809 GAGAGGAACGAGTTT GATACGGGGAG TCGA CTCCCCGTAGC GTTGATTATCCTAAG YPN_0442 535230 - 534841 - | hypothetical protein YPN_0443 535925 - 535227 - | DedA family membrane protein YPN_0444 536784 - 536203 - | lipoprotein YPN_0445 537779 - 536985 - | DNA-binding transcriptional repressor ExuR TERM 593 537358 - 537395 + g 70 -2.8 -4.81851 | gap 2, opp_overlap 537355, overlap 537361 TGGAATTTAAGATCC CATTGAGAGTCACGGAAG CGAT CTTCC-TGACGCGCA-TG TTTTTGAATTTCAAT TERM 594 537958 - 537991 + r 79 -11.1 -3.2115 | opp_overlap 537960 537965, overlap 537960 537965 GCGGATAACAGGAGA GATGAAAGCCCGATA AATT TACCGGGCTTTCATG TTAGTAGGTCATTTA TERM 595 537989 - 537960 - R 100 -15.9 -3.02381 | opp_overlap 537958 537960 537965, overlap 537965 GGATAACAGGAGAGA TGAAAGCCCGATA AATT TACCGGGCTTTCA TGTTAGTAGGTCATT TERM 596 537960 - 537989 + r 100 -13.7 -3.16264 | opp_overlap 537960 537965, overlap 537958 537965 GGATAACAGGAGAGA TGAAAGCCCGATA AATT TACCGGGCTTTCA TGTTAGTAGGTCATT TERM 597 537984 - 537965 - R 84 -10 -3.90358 | opp_overlap 537960 537958 537965, overlap 537960 ACAGGAGAGATGAAA GCCCGATA AATT TACCGGGC TTTCATGTTAGTAGG TERM 598 537965 - 537984 + r 74 -7.8 -3.95022 | opp_overlap 537965 537960, overlap 537960 537958 ACAGGAGAGATGAAA GCCCGATA AATT TACCGGGC TTTCATGTTAGTAGG YPN_0446 539346 - 538042 - | ExuT transport protein YPN_0447 540091 - 540399 + | glucuronate isomerase YPN_0448 540399 - 541808 + | glucuronate isomerase TERM 599 542994 - 542965 - g 73 -2.9 -5.00616 | gap 1 GCTTTGTGGAAAAAA CCATTA-CGGAAGA GAT TGTTCCGGTATTGG ATCTGCCCGAAGACG YPN_0449 542007 - 543458 + | altronate oxidoreductase YPN_0450 543469 - 544959 + | altronate hydrolase TERM 600 545009 - 545050 + F 75 -8.7 -3.63559 | gap 1, opp_overlap 545010, overlap 545007 545010 CTGTTTTTTATGGAA ACGCACTTCCCCTTCACACT TTA AGC-TGTAGGGGGAGTGCGC TGTTTGCTTATTAAT TERM 601 545010 - 545049 + F 83 -12.2 -2.77051 | gap 1, opp_overlap 545010, overlap 545009 545007 TGTTTTTTATGGAAA CGCACTTCCCCTTCACACT TTA AGC-TGTAGGGGGAGTGCG CTGTTTGCTTATTAA TERM 602 545049 - 545010 - f 93 -12.2 -3.64703 | gap 1, opp_overlap 545010 545009 545007 TGTTTTTTATGGAAA CGCACTTCCCCTTCACACT TTA AGC-TGTAGGGGGAGTGCG CTGTTTGCTTATTAA YPN_0451 545112 - 545642 + | hypothetical protein TERM 603 545682 - 545658 - T 100 -9.9 -4.51812 | opp_overlap 545661, overlap 545660 545661 TTTGATAACAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 604 545680 - 545660 - T 100 -12.5 -3.86244 | opp_overlap 545661, overlap 545658 545661 TGATAACAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 605 545661 - 545679 + T 100 -16 -4.8048 | opp_overlap 545660 545658 545661 GATAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 606 545679 - 545661 - T 100 -16 -2.90662 | opp_overlap 545661, overlap 545660 545658 GATAACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_0452 546218 - 545760 - | transposase for the IS1541 insertion element TERM 607 546349 - 546331 - R 100 -16 -3.07307 | opp_overlap 546331 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 608 546331 - 546349 + r 100 -16 -4.36914 | opp_overlap 546331 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 609 546369 - 546394 + r 83 -9.1 -4.19817 | opp_overlap 546369 CTGGGCACAAAAAAA TGCCAGTCA AACTTAAC TGACTGGCA TTTTGCGTAGGTAAA TERM 610 546394 - 546369 - R 100 -9.8 -5.60993 | opp_overlap 546369 CTGGGCACAAAAAAA TGCCAGTCAA ACTTAA CTGACTGGCA TTTTGCGTAGGTAAA YPN_0453 547738 - 546419 - | serine/threonine transporter SstT TERM 611 547854 - 547879 + r 76 -6.9 -4.44667 | gap 1 TGACTTTGGGTATAG CGCTCAAGCC GGAACGA GGC-TGAGCG TTTATTGTTCACACC TERM 612 548090 - 548069 - R 70 -3.7 -4.85653 | gap 1, opp_overlap 548088, overlap 548070 548071 TATATACAAAATAAA TGTGGGGCTA TGG TAGCCCCG-A TCGATAGATTGTAGT YPN_0454 549205 - 548210 - | MocA family oxidoreductase YPN_0455 549917 - 549408 - | hypothetical protein TERM 613 550112 - 550140 + r 100 -11.7 -4.431 | GGATTAGCGGTCTGT CGATACCTGCACC ATA GGCACAGGTATCG TTTTATCAATGGATA YPN_0456 553140 - 550156 - | autotransporter protein TERM 614 552085 - 552103 + g 70 -9 -3.55378 | overlap 552083 GATGTTAGAATCGCC TAGCATAT TCC ATATGCTA TGTTTATCGATAAAT TERM 615 552614 - 552632 + g 72 -3.8 -4.8543 | opp_overlap 552614 GAAACATAGAGAATA CCATTATC ACC GACAGTGG TTTTTGTGGCACTTC TERM 616 553504 - 553522 + H 100 -14.6 -3.54459 | opp_overlap 553518 553519 CTTGCGGTGTGGGTT CGCGCTTG GCA CAAGCGCG TTTAAAACGCATTAA YPN_0457 553609 - 554796 + | methyltransferase TERM 617 554805 - 554836 + T 100 -15.2 -3.85879 | overlap 554831 TTTCTAATCGGTATT TCACAGGGTGGGGT TTTC GCCACACCCTGTGA TTATTCTCAGTTCTA YPN_0458 556933 - 554912 - | 2,4-dienoyl-CoA reductase TERM 618 555947 - 555961 + g 70 -2.7 -4.82901 | overlap 555948 GTTAATTTCATCGGC CCGGC CCTGT GCCGC TTTTTGTACAAAAGC TERM 619 556975 - 557016 + r 82 -3 -5.4756 | gap 2 ACCATTATTGTTATA TCTCCGCCG-CC-CTTACTG AATC CAGCAAGTGGTCGGATGAGA TTTTTTATTCAAATT YPN_0459 557715 - 557146 - | acid-resistance membrane protein YPN_0460 559605 - 558106 - | kinase protein TERM 620 559561 - 559575 + g 73 -6.4 -4.4648 | CTCGTCAACGTACTG GATGGT TTC GCCATC TTTTGTCGTACAGGT YPN_0461 561370 - 559637 - | hypothetical protein YPN_0462 562409 - 561426 - | hypothetical protein TERM 621 562507 - 562473 - R 100 -8.6 -5.626 | opp_overlap 562476, overlap 562476 GATGCGACAAAAAAA TAAGGCAAAGCGCC GTGAATG GGGGCTTTGCCTTT ACATTACAGTACCAA TERM 622 562476 - 562504 + r 86 -10.3 -3.76125 | opp_overlap 562476 562473 GCGACAAAAAAATAA GGCAAAGCGCC GTGAATG GGGGCTTTGCC TTTACATTACAGTAC TERM 623 562504 - 562476 - R 100 -10.3 -4.89054 | opp_overlap 562476, overlap 562473 GCGACAAAAAAATAA GGCAAAGCGCC GTGAATG GGGGCTTTGCC TTTACATTACAGTAC YPN_0463 563212 - 562511 - | hypothetical protein YPN_0464 563792 - 563151 - | tellurium resistance protein YPN_0465 564463 - 563825 - | tellurium resistance protein TERM 624 565356 - 565366 + G 70 -2.4 -5.04987 | overlap 565336 565362 ATGTGCGCTTATCTG CGCC CTC GGCC TTTTTTAGCCGTATT TERM 625 565615 - 565603 - g 73 -9.1 -3.6959 | overlap 565605 ACAGCAGGATTTAAA CAGCG GCA CGCTG GCGCTAAACGTCGTG YPN_0466 565178 - 566866 + | hemolysin activator protein TERM 626 568183 - 568156 - g 75 -9 -3.83205 | overlap 568157 ACCCTTGATATTAAA GCCCGTGGGCAG CTAA CCGCCCAAGGGA AAAATATTAGCGGCA TERM 627 568182 - 568157 - g 78 -12.5 -2.89602 | overlap 568156 CCCTTGATATTAAAG CCCGTGGGCAG CTAA CCGCCCAAGGG AAAAATATTAGCGGC TERM 628 571428 - 571413 - g 70 -2.4 -4.91712 | overlap 571415 571423 TGCAACGGATAAAAA CGGCAC ACTA GCGCTG TTGGCACCGGTAATT TERM 629 571728 - 571713 - g 79 -8.2 -4.4009 | CTGGACGGCAGAAAA CCCCGA TATT CCGGGG GGGCGTTATACTCAA TERM 630 572184 - 572154 - g 80 -9.6 -4.07133 | TACGGTGATAAACAA TGGGGCAGCACCCG GCG CGATTGTCGCCCCA CGTGATCGCGACAGC YPN_0467 566911 - 572763 + | adhesin YPN_0468 572827 - 572991 + | hypothetical protein YPN_0469 575544 - 573259 - | putative autotransporter protein YPN_0470 576599 - 575604 - | hypothetical protein YPN_0471 578080 - 576701 - | hypothetical protein TERM 631 577442 - 577454 + g 82 -4.1 -5.24129 | ATCAACGAAGTAGCC CAGTG ACG CATTG TTTTTTGTCGACCAA TERM 632 578526 - 578550 + G 71 -11.5 -2.79023 | opp_overlap 578536, overlap 578524 GTTGGCCCCTCTGGC TGCGCAAAATC AAC GATGTTGCGCA TGATTGCTGGCCTTG YPN_0472 578418 - 579521 + | transporter ATP-binding protein TERM 633 580320 - 580353 + G 76 -8.1 -4.26792 | overlap 580322 580350 ACAGCTACAGCCAGT CACGCTGTCCGCG GGTGACAG CGCAGACAGCGTA TTTTACGGTTTCTAT TERM 634 580322 - 580351 + G 80 -10.7 -3.72407 | overlap 580320 580350 AGCTACAGCCAGTCA CGCTGTCCGCG GGTGACAG CGCAGACAGCG TATTTTACGGTTTCT YPN_0473 579604 - 582957 + | hypothetical protein TERM 635 583030 - 583014 - f 72 -6.5 -4.36914 | opp_overlap 583014 TGTGGCGCTACAAAA GCCTGAG TGG CTCATGC TATAGTAAATTCCTT YPN_0474 583066 - 584052 + | LacI-family regulatory protein TERM 636 585315 - 585302 - g 70 -8.1 -3.66095 | AAAGTGGTACTGAAA GGGGA AATA TCCCC GGAACAAGCGGTTGC YPN_0475 584129 - 585373 + | sugar binding protein YPN_0476 585427 - 586308 + | permease protein TERM 637 586826 - 586839 + G 80 -2.3 -5.42259 | overlap 586827 586837 CAGGATCGATGGCGC AGGTG AATT CACCA TTTTTTTCAAGGTGG YPN_0477 586308 - 587126 + | permease TERM 638 587483 - 587499 + G 77 -12.3 -3.10164 | opp_overlap 587473 587470 ATTGATACCCGCTTC GTTGCCG AAG CGGCAAC TTGCCTGCTGGCTCG YPN_0478 587123 - 587638 + | hypothetical protein TERM 639 588409 - 588422 + G 70 -4.5 -4.70879 | overlap 588410 GAGGCAGGCGTTGGC TCGGT GATG ACCGG TTTTTGCGATTTCGG TERM 640 589010 - 588988 - g 70 -9.9 -3.18383 | gap 1 ATGTCGATCTATCAA TCCCTCTGCG CTAT CGCAG-GGGA GGTTAAGGTGATCAC YPN_0479 587689 - 589872 + | glycosyl hydrolase YPN_0480 591462 - 589936 - | hypothetical protein YPN_0481 593368 - 591467 - | membrane protein YPN_0482 594401 - 593352 - | multidrug resistance protein MdtN YPN_0483 594746 - 594411 - | hypothetical protein TERM 641 594651 - 594680 + g 71 -6.3 -4.39287 | opp_overlap 594651 CGCTATAGCCGATAA CAGGATCAATGGC CCAC GCCATAGCGCCTG TTTTGCTGTCGTTAA YPN_0484 594943 - 594743 - | hypothetical protein TERM 642 595796 - 595780 - g 80 -2.2 -5.44721 | opp_overlap 595780 AGCAGTGTAAAAAAA GCGG ATGTTGGTA CCGC TGTATTGGATCTCAT YPN_0485 595705 - 596937 + | aminotransferase TERM 643 596980 - 596990 + G 78 -2.4 -5.25699 | opp_overlap 596971 596970 AAATATGGCATTACT GCCG ATG CTGC TTTTTATTGTGTCGT YPN_0486 596930 - 598381 + | membrane protein YPN_0487 598385 - 598831 + | hypothetical protein YPN_0488 598965 - 598828 - | hypothetical protein TERM 644 599176 - 599166 - g 72 -4 -4.7497 | CTTATCCATGAAAAA TCTT GGG AAGA ACGTGATTTTATCAT YPN_0489 598965 - 599591 + | hypothetical protein YPN_0490 599607 - 599987 + | translational inhibitor protein TERM 645 600308 - 600324 + G 73 -2.9 -4.91511 | CCCGAGACGATGTAC CCCAGTG TGC CATTCGG TTTTTCTCATGCGGT TERM 646 600545 - 600570 + G 78 -6.1 -4.82901 | TCACCGGCGAATTTG GCCGCAATTTG CGCA CAAATCGGGGC TTTTTATGAGGGCGC YPN_0491 600272 - 600676 + | translational inhibitor protein YPN_0492 601193 - 600891 - | hypothetical protein YPN_0493 602169 - 601453 - | hypothetical protein YPN_0494 602331 - 603263 + | LysR family regulatory protein YPN_0495 603714 - 603917 + | hypothetical protein YPN_0496 603851 - 604225 + | hypothetical protein YPN_0497 604380 - 604222 - | hypothetical protein TERM 647 604265 - 604280 + g 74 -4 -5.00616 | TGTGCCAGATTTTGT TTGAGT TGCT GCTCAA TTTTTTGCACAGAAA YPN_0498 605299 - 606681 + | hypothetical protein YPN_0499 606690 - 607160 + | hypothetical protein YPN_0500 607187 - 607642 + | hypothetical protein YPN_0501 607659 - 607949 + | hypothetical protein YPN_0502 607927 - 608265 + | hypothetical protein TERM 648 608473 - 608503 + T 100 -9.8 -4.93877 | opp_overlap 608476, overlap 608476 TATCCCAGAAATAAC AAAGGAGTTACGCT ATT AACGTAACTCCTTG TTTTATTTGGTGGCC TERM 649 608476 - 608500 + T 100 -11.5 -4.56436 | opp_overlap 608476, overlap 608473 CCCAGAAATAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 650 608500 - 608476 - T 100 -13.7 -4.63048 | opp_overlap 608473 608476 CCCAGAAATAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 651 608760 - 608736 - T 100 -8.6 -5.90981 | opp_overlap 608736 608726 TTATAGGAAAAAAAA TCCCGACACA AATAA TATGCCGGGA TTTTTATTACTTCAC TERM 652 608736 - 608760 + T 78 -4.2 -5.1963 | opp_overlap 608736, overlap 608726 TTATAGGAAAAAAAA TCCCGACACA AATAA TATGCCGGGA TTTTTATTACTTCAC YPN_0503 610621 - 608783 - | RNA polymerase sigma factor RpoD TERM 653 609886 - 609911 + g 80 -3.1 -5.24551 | overlap 609887 GCTTCAGAATTTCAG CGGCAGCATTC GCGT GATTGCGGCCA TTTTTCTTGATTTCC TERM 654 610731 - 610750 + r 81 -9.3 -3.87869 | GCTATAGCGGCATAT TGTGGGG AGTTGC CCCCACA TTTATCGGCAATTAA dnaG 612527 - 610779 - | DNA primase TERM 655 610937 - 610927 - G 74 -6.8 -4.37092 | overlap 610929 AGCGTGTCGACAAAA GTCG GTT CGAC CATATCCTCTACAAT TERM 656 612562 - 612589 + r 76 -11.2 -2.55668 | opp_overlap 612562, overlap 612561 CATAAACGAGAACAA GCCGCGCATTCC TTTC GGAAAGCACGGC CTTCGTATGCAACTA TERM 657 612589 - 612562 - R 100 -13.4 -3.94823 | opp_overlap 612562 612561 CATAAACGAGAACAA GCCGCGCATTCC TTTC GGAAAGCACGGC CTTCGTATGCAACTA rpsU 612878 - 612663 - | 30S ribosomal protein S21 TERM 658 614259 - 614273 + G 70 -9.2 -3.551 | TTGAGTGTGTCGGTG CGGCCG CGG TGGCCG TTATCTGAGTTACCA YPN_0506 613284 - 614297 + | O-sialoglycoprotein endopeptidase TERM 659 614314 - 614339 + T 100 -12.6 -3.47841 | overlap 614306 CAGAATGGCTGAGCG TGGCTGCGGC TGCGTT GCCGCAGTCA TTCTGATATGGGTGT TERM 660 614372 - 614391 + T 76 -10.7 -2.72661 | overlap 614361 AATGGCTGAGCGTGG CTGCGGC TGTGTT GCCGCAG TCATTCAAAATACTC TERM 661 614404 - 614426 + T 76 -2.7 -5.33921 | gap 1, opp_overlap 614404, overlap 614406 614407 CAGTCATTCAAAATA CTCA-TGGAC AAGA GTCCACTGCG TTTTTTCATTCCTTT TERM 662 614449 - 614507 + T 79 -11.1 -3.06696 | gap 1, overlap 614491 614498 ATTCCTTTGCGCCTT GCCTCGCTCATGCTCAGTCATTCTGATA TGGG TGTC-GAATGGCTGGGCGTGGCTGTGGC TGTGTTGCCGCAGCC TERM 663 614491 - 614530 + T 100 -12.1 -4.07885 | overlap 614449 614498 ATGGGTGTCGAATGG CTGGGCGTGGCTGTGGC TGTGTT GCCGCAGCCATTCTCGG TTTTGGGGAAAACTA TERM 664 614498 - 614523 + T 100 -12.6 -3.52113 | overlap 614449 614491 TCGAATGGCTGGGCG TGGCTGTGGC TGTGTT GCCGCAGCCA TTCTCGGTTTTGGGG YPN_0507 615193 - 614543 - | putative glycerol-3-phosphate acyltransferase PlsY folB 615301 - 615660 + | bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase TERM 665 615870 - 615892 + F 100 -8.4 -5.77632 | opp_overlap 615870 AAATTCTAAATAGAA CGGCACTGTT TTC AGCATTGCCG TTTTTTTGTGGTTTT YPN_0509 615934 - 616752 + | undecaprenyl pyrophosphate phosphatase TERM 666 616969 - 616951 - T 75 -8.8 -3.58343 | opp_overlap 616931 GGCAGGAGTCTGAAA CCCCTTGT TTT ACAGGGGG AAACGAACAGGGAGT cca 618226 - 616988 - | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase TERM 667 617818 - 617796 - G 100 -12.7 -4.21275 | overlap 617807 CCAAGGTAGGCAAAA CGGGCGGCA AAGCG TGCCACCCG CAGAACGCGCAATGG YPN_0511 619009 - 618386 - | putative signal transduction protein TERM 668 620095 - 620111 + G 73 -5.1 -4.64657 | overlap 620084 620097 CGCTTTGGCTATGGT TCGCCAA TCG TTGGCTA TTTTTGGCGGTTTGG YPN_0512 619313 - 620482 + | hypothetical protein TERM 669 623259 - 623219 - g 82 -11.2 -3.73224 | gap 1 CTATTCGCCAGCAAA TTCTCTGCCGCCACCGCGA AGAT CCGCAGTTGCAGCAG-GAA GTCCGCGAAATGCGG YPN_0513 620791 - 623646 + | bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase TERM 670 623971 - 623984 + G 70 -9.5 -3.18681 | ATATTGCCTCCCTTG GCGCG GTTG CGCGC TTAGTCGGGTTGACC YPN_0514 623781 - 625211 + | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase TERM 671 625233 - 625216 - f 86 -12.7 -2.52464 | GCCGCGGCTAAGTCA GCGCCAG AGCG CTGGCGC ATAAGGATGTGGCAG TERM 672 625305 - 625323 + G 76 -5.2 -4.8048 | overlap 625306 GGGTTGTTATCCACT TCCCTGTT GGG GACGGGGG TTTTTGCTGTGCCAG YPN_0515 625248 - 626498 + | inner membrane protein YjeH TERM 673 626618 - 626644 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 626607, overlap 626613 626619 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 674 626619 - 626645 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 626607, overlap 626613 626618 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_0516 627104 - 626823 - | hypothetical protein ribB 627673 - 628326 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase YPN_0518 628751 - 629533 + | hypothetical protein TERM 675 629902 - 629938 + T 74 -10.3 -2.57564 | opp_overlap 629911, overlap 629901 629906 629910 GGCAATGACTTTGGG TATGGTAAAGGAAGGTG CAT TGCCTTCCCTTACTATA ATTATCCCAAAATAA YPN_0519 631100 - 629940 - | hypothetical protein TERM 676 631114 - 631135 + r 73 -7.3 -4.23723 | gap 1 ATTAATCAGCCTTAG CCACC-CATG CTA CGTGTGGTGG TTTTGGATGATGTTG YPN_0520 631796 - 631110 - | hypothetical protein TERM 677 632064 - 632030 - R 100 -10.6 -5.09895 | overlap 632034 GAGGGAGGCAAAAAA TAAACCGGGCGCAGCC AAT GACTGTGCCCGGTGAA GCCAAACCGCTGACG TERM 678 632060 - 632034 - R 100 -15.8 -5.0666 | overlap 632030 GAGGCAAAAAATAAA CCGGGCGCAGCC AAT GACTGTGCCCGG TGAAGCCAAACCGCT tolC 633494 - 632097 - | outer membrane channel protein TERM 679 632879 - 632864 - G 74 -6.8 -4.30987 | opp_overlap 632877 ATTCGGGATAATAAA CACCAG TAAT CTGGCG CAAGCTCTCTAGTGC nudF 633890 - 634522 + | ADP-ribose pyrophosphatase NudF YPN_0523 634556 - 634981 + | hypothetical protein YPN_0524 635087 - 635890 + | cyclic 3',5'-adenosine monophosphate phosphodiesterase YPN_0525 635890 - 636471 + | esterase YqiA TERM 680 637782 - 637746 - g 90 -8 -5.00616 | opp_overlap 637746 637745, overlap 637750 GTGGTGCGTAAAAAA CTGACCAG-TGGCCCGGC ACT GCCTGGCAAACTGG-CAG ATTGTACTTCGCAGG YPN_0526 636573 - 638468 + | DNA topoisomerase IV subunit B YPN_0527 638472 - 639383 + | LysR family regulatory protein TERM 681 639434 - 639408 - T 100 -17.3 -4.4715 | GGGTAACGTATAAAA CGGCCCTCCCC AGAGA GAGGAGGGCCG AACCGCTTAGCTGTT YPN_0528 640025 - 639441 - | modulator of drug activity TERM 682 640554 - 640527 - g 84 -4.8 -5.22039 | gap 1, overlap 640528 GCTAAATTCAAAAAA TCAGCCCGT-ACC GTG GGTGACGTGCTGG GTAAATATCATCCGC TERM 683 640553 - 640528 - g 70 -8.3 -3.72139 | gap 1, overlap 640527 CTAAATTCAAAAAAT CAGCCCGT-ACC GTG GGTGACGTGCTG GGTAAATATCATCCG TERM 684 641118 - 641082 - g 90 -8 -5.00616 | gap 1, overlap 641085 641087 GCGGTGTGGAAAAAA GAAGATGGCAGCGCCGT GATC ACGGCGTTACCA-CATC AGGTTTCCGGCGCGA TERM 685 641115 - 641085 - g 86 -8.3 -4.61482 | gap 1, overlap 641082 641087 GTGTGGAAAAAAGAA GATGGCAGCGCCGT GATC ACGGCGTTACCA-C ATCAGGTTTCCGGCG TERM 686 641114 - 641087 - g 86 -12 -3.91465 | overlap 641085 641082 GTGGAAAAAAGAAGA TGGCAGCGCCGT GATC ACGGCGTTACCA CATCAGGTTTCCGGC TERM 687 641542 - 641557 + G 74 -4.6 -4.81249 | opp_overlap 641541 641542 AAGATGATCCTAAAC CGCTAC TGAT GCAGCG TTTTTCCATTTCGGA YPN_0529 640329 - 642602 + | DNA topoisomerase IV subunit A TERM 688 643326 - 643303 - g 73 -3.2 -5.04987 | AACAGGTGCAAAAAA GAAACATC TCTATTTG GATGTTCC CAGAAGGCACACGCA YPN_0530 642891 - 643622 + | acyltransferase TERM 689 643657 - 643667 + F 75 -8.2 -3.89695 | overlap 643650 CAGGCTATCGCGGCC CCGC GCG GCGG TTATATTTATCGCCA TERM 690 643934 - 643945 + G 100 -7.2 -5.47399 | TATTAGAATCTCGCC GCGG CCAA CCGC TTTTTTTAACCTTGC YPN_0531 643801 - 645225 + | repressor protein for FtsI TERM 691 645356 - 645368 + F 78 -9.1 -3.83409 | CGCATGTCTCGCTTG CCTGC TTC GCAGG TTTACTGATATGTAC TERM 692 646194 - 646170 - g 71 -5.8 -4.36914 | CTGCGGGTGAGAAAA TTACGGATAT TCAGG ATGTCCGTAA CACCGTTGTGATGCG YPN_0532 645533 - 647080 + | hypothetical protein YPN_0533 647065 - 647877 + | hypothetical protein TERM 693 647895 - 647865 - T 86 -7.7 -4.71061 | gap 1 ATCCAGAGGGAAAAA CAGGC-AGCATTAA GGGG TTATTGCTGGCCTG AAATCAGCGGTCAGA dkgA 648732 - 647899 - | 2,5-diketo-D-gluconate reductase A TERM 694 648777 - 648802 + r 71 -3.4 -4.99645 | overlap 648771 GTATTAGCCCGTTGC TGATAACG TAAGTTTAGT CGTTATCA TTTTATTTATGACCT TERM 695 649067 - 649097 + r 93 -9.7 -4.2558 | opp_overlap 649064 GTATAAACAGGAGGA CTGGCAGCATGAC ATGCG GTAATGCCGCCAG TTTTGGTACGAGATA TERM 696 649158 - 649148 - R 76 -6.8 -4.55721 | AAATCTTACATAAAA CGGT TAT ACCG CCGCTTCATAGATAC YPN_0535 650308 - 649151 - | iron-containing alcohol dehydrogenase TERM 697 650215 - 650232 + g 71 -6.9 -4.21631 | opp_overlap 650213 650215 CGTAGGTAATCAATA TCCGGGC ATCC GCCGGGA TTTCTTGAGTCAATT TERM 698 650407 - 650419 + H 80 -4.8 -5.17353 | CGTAACCACATCACT GTGC CTGGA GCAC TTTTTTCGTCAATAT YPN_0536 650706 - 651599 + | AraC family transcription regulator TERM 699 651644 - 651660 + T 75 -5.8 -4.65916 | opp_overlap 651644 AAGGCTTCATAGAAA CGGCGT ATTAG ATGCCG TTTTATTCACCTGGA YPN_0537 652353 - 651691 - | DedA family membrane protein YPN_0538 653757 - 652546 - | cystathionine beta-lyase TERM 700 653589 - 653613 + g 86 -5 -5.2696 | gap 1, overlap 653592 CATAGAACAACTCAC CATTGCCCCGA TTGA TCGTGGCA-TG TTTTTTCGCTTTTAC TERM 701 653592 - 653611 + g 74 -7.8 -4.24654 | overlap 653589 AGAACAACTCACCAT TGCCCCGA TTGA TCGTGGCA TGTTTTTTCGCTTTT YPN_0539 654236 - 655273 + | MotA/TolQ/ExbB proton channel family protein YPN_0540 655283 - 655708 + | biopolymer transport protein ExbD TERM 702 655749 - 655709 - T 88 -9.7 -4.17316 | opp_overlap 655709 655710, overlap 655710 AGCGGCGCAAAATAA TTTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAAC TTTGGTTTTTGAGGA TERM 703 655709 - 655749 + T 93 -9.7 -4.32046 | opp_overlap 655709 655710, overlap 655710 AGCGGCGCAAAATAA TTTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAAC TTTGGTTTTTGAGGA TERM 704 655748 - 655710 - T 95 -13.2 -3.09908 | opp_overlap 655709 655710, overlap 655709 GCGGCGCAAAATAAT TTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAA CTTTGGTTTTTGAGG TERM 705 655710 - 655748 + T 95 -13.2 -3.18505 | opp_overlap 655710 655709, overlap 655709 GCGGCGCAAAATAAT TTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAA CTTTGGTTTTTGAGG YPN_0541 657361 - 655805 - | hypothetical protein TERM 706 657337 - 657317 - G 87 -4.8 -5.45652 | overlap 657318 ATTTTTAATAAAAAA CTCATACT TCTCT AGTATGAA AGTTATCATTGTTTT YPN_0542 657959 - 657447 - | hypothetical protein YPN_0543 658416 - 657943 - | hypothetical protein YPN_0544 659183 - 658413 - | hypothetical protein TERM 707 659155 - 659141 - G 80 -4.3 -5.0916 | CGCTTAACAGAAAAA TCATC ACTGG GATGA TAATAATAGTATTAA YPN_0545 660000 - 659167 - | hypothetical protein TERM 708 659376 - 659399 + g 86 -8.2 -4.67563 | opp_overlap 659375 659373 659376, overlap 659375 AGCCAAAACTAATAC TGTATTGCAG TGTG CTGCAAAACA TTTTCATTTCTATTG YPN_0546 660872 - 659997 - | hypothetical protein YPN_0547 662155 - 660869 - | type II secretion protein YPN_0548 662709 - 662167 - | hypothetical protein YPN_0549 663293 - 662505 - | hypothetical protein TERM 709 662745 - 662774 + gr 100 -4.3 -5.96894 | overlap 662747 GAGATCTTGCGAGCC TTGATTGCCTTGT AATA ACAAGGTAGGCGA TTTTTTTATTTGGGT YPN_0550 664040 - 663591 - | outer membrane secretin family protein YPN_0551 664909 - 664055 - | hypothetical protein TERM 710 664392 - 664406 + g 74 -10 -3.57418 | opp_overlap 664391 664390 ATTTTATTAATAACC CCCTGA TAC TCAGGG TTGCTTTGATAACTC YPN_0552 665772 - 664906 - | hypothetical protein YPN_0553 666246 - 665824 - | hypothetical protein TERM 711 665868 - 665883 + g 73 -5.4 -4.70659 | gap 1 CAGTGATAGCAACGG CGTAGGG AAC CCC-ACG TTTTTGGATATCAAC TERM 712 666298 - 666272 - H 81 -9.5 -3.8594 | opp_overlap 666274, overlap 666274 AATAGTGAGATGAAA GATATGGCAGC AGATG GCTGCCATATT TATTGTGCCCAGAAA TERM 713 666274 - 666296 + H 100 -12.1 -4.30719 | opp_overlap 666274 666272 TAGTGAGATGAAAGA TATGGCAGC AGATG GCTGCCATA TTTATTGTGCCCAGA TERM 714 666296 - 666274 - H 91 -12.1 -3.51034 | opp_overlap 666274, overlap 666272 TAGTGAGATGAAAGA TATGGCAGC AGATG GCTGCCATA TTTATTGTGCCCAGA TERM 715 666315 - 666333 + H 100 -16 -3.07307 | opp_overlap 666315 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 716 666333 - 666315 - H 100 -16 -4.37092 | opp_overlap 666315 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0554 666446 - 666904 + | transposase for the IS1541 insertion element TERM 717 666982 - 667006 + F 93 -9.9 -4.38927 | opp_overlap 666985, overlap 666984 666985 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCTATGAAAA TERM 718 666984 - 667004 + F 100 -12.5 -3.79864 | opp_overlap 666985, overlap 666982 666985 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCTATGAA TERM 719 667003 - 666985 - f 100 -16 -4.8048 | opp_overlap 666984 666982 666985 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTATGA TERM 720 666985 - 667003 + F 100 -16 -2.87195 | opp_overlap 666985, overlap 666984 666982 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTATGA YPN_0555 667257 - 669737 + | outer membrane usher protein TERM 721 669975 - 669953 - g 74 -4.1 -4.93316 | GAACAACAGCAAAAA GTCACCACC CCGTT AGTGGCAAC GCCACCAGTTCAGCG YPN_0556 669755 - 670474 + | fimbrial chaperone protein TERM 722 670953 - 670941 - g 73 -6.3 -4.5448 | CAGGGACAAAAATAA CGATT GCT AATCG AGTCACGGTCCAACT YPN_0557 670499 - 671605 + | fimbrial protein TERM 723 671788 - 671805 + T 71 -4.1 -4.87786 | TGTCAATAACCTCAA GCGAC CAATAAGT GTCGC TTTTTATGCCGTTAG YPN_0558 672896 - 671817 - | iron-enterobactin transporter periplasmic binding protein TERM 724 673767 - 673777 + G 91 -3.2 -5.72616 | ATGAATATTCTTTCC CTAC GCG GTGG TTTTTTTCTGTGGAT YPN_0559 673752 - 674747 + | hypothetical protein TERM 725 674813 - 674778 - T 100 -12 -4.39426 | opp_overlap 674775 674774 TACAGGGCCATAAAA TCGCCACAGTAATC TCATACTC GCTTACTGTGGCGA TCCCTCTTCTTCCGT YPN_0560 675417 - 674839 - | lipoprotein YPN_0561 675420 - 675587 + | hypothetical protein YPN_0562 676489 - 675656 - | flagellar biosynthesis/export membrane protein flhA, fhiA YPN_0563 677753 - 676452 - | hypothetical protein TERM 726 676599 - 676613 + gr 84 -10 -3.74178 | overlap 676591 676593 676607 TCGCACGCCGCGTAG CCGTTG GTT CAACGG TTTACCCTTTGATTC flhB 678873 - 677740 - | flagellar biosynthesis protein FlhB TERM 727 678201 - 678218 + g 73 -2.7 -4.94243 | TTTTATGCTCTTGTT TGACC TCCTGTTT GGTCA TTTTCATTTTTTTGG TERM 728 678830 - 678840 + g 74 -4.6 -4.76312 | overlap 678823 678820 GCTTTCGACAGCTTC CCCG CTG TGGG TTTTTCACTCTTCTC YPN_0565 679646 - 678873 - | flagellar assembly protein YPN_0566 679925 - 679653 - | flagellar assembly protein fliP 680697 - 679927 - | flagellar biosynthesis protein FliP YPN_0568 681107 - 680694 - | flagellar switch protein TERM 729 680738 - 680750 + g 70 -3.4 -4.90266 | opp_overlap 680738 TATTGATGTTAATAA TACG CAGGC CGTA TTTTTCATTAATCAC YPN_0569 681999 - 681100 - | flagellar motor switch protein TERM 730 681341 - 681361 + g 88 -3.9 -5.67967 | ACTAAGTGTTCAAGT TGCCTCTCT GAC AGTGAGACA TTTTTTTCTACTGCT TERM 731 681576 - 681589 + g 76 -3.1 -5.1361 | AGAGATCGGTTATTT CAAGC CCGA GTTTG TTTTTTAGCCTTTCT TERM 732 683105 - 683121 + G 74 -7.3 -4.258 | GGCCAGAGGATATTC TGCCTTT GGT GAAGGCA TTTATTAATAAGTAC YPN_0570 682522 - 683550 + | sigma-54 transcriptional regulatory protein YPN_0571 683567 - 683947 + | flagellar hook-basal body complex protein fliF 683957 - 685597 + | flagellar MS-ring protein fliG 685569 - 686612 + | flagellar motor switch protein G TERM 733 686649 - 686631 - g 82 -3.8 -5.252 | overlap 686633 GATGTTGATAAAAAA TACCCC ACGGGCG GGGGCA GTGAAACTGCGGGTT TERM 734 687295 - 687305 + G 73 -3.2 -5.00616 | CAATGCATTGGTGCG TTGC ACA GCAG TTTTTTGACGGAACC fliH 686617 - 687333 + | flagellar assembly protein H TERM 735 687380 - 687400 + G 77 -11.8 -3.15544 | opp_overlap 687376 ATCGAAAACATTCAT CTGGCCCG AGTGG CGGGCCGG TTAGTGCGAGTGACG fliI 687326 - 688666 + | flagellum-specific ATP synthase YPN_0576 688670 - 689107 + | hypothetical protein TERM 736 689138 - 689167 + T 100 -15.9 -5.4833 | opp_overlap 689138 GCGACCATAAAAAAA TCCGTCATAGGGA ATAT TCTCTATGACGGA TTTTTTATTGGGTGG TERM 737 689167 - 689138 - T 100 -13.7 -5.67063 | opp_overlap 689138 GCGACCATAAAAAAA TCCGTCATAGGGA ATAT TCTCTATGACGGA TTTTTTATTGGGTGG YPN_0577 689860 - 689435 - | hypothetical protein YPN_0578 690133 - 689867 - | flagellar regulatory protein flgA 691279 - 690362 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 738 690423 - 690440 + g 76 -3.3 -5.17576 | overlap 690424 ACCGTGGCGGTCACC ACTCGGC CACT GCTGAGG TTTTTTACCTTGATA flgB 691307 - 691714 + | flagellar basal body rod protein FlgB flgC 691717 - 692142 + | flagellar basal body rod protein FlgC flgD 692145 - 692801 + | flagellar basal body rod modification protein TERM 739 693213 - 693229 + G 70 -11.5 -2.62184 | opp_overlap 693204 AAATTACAGGGCTAC CCGGCGG ATG CTGCCGG TAATATCCAGGCGGG flgE 692856 - 694097 + | flagellar hook protein FlgE TERM 740 694358 - 694348 - g 71 -5.4 -4.57073 | TATTGCCCTTAAAAA TCAG GGG CTGA TCGCGGTGCTCAGTG TERM 741 694644 - 694618 - g 76 -5.9 -4.73105 | gap 1 ACTCAGAAAAAACAA CCGCGGTTTACT GGTC AGTAA-CCGTGG CCCGGCGGCCCGTGA flgF 694097 - 694828 + | flagellar basal body rod protein FlgF flgG 694896 - 695681 + | flagellar basal body rod protein FlgG TERM 742 696197 - 696181 - g 79 -7.3 -4.56775 | ATCCGTGGCGAAAAA TGGCTGA CCC TCAACCA AGGCGATGAATATAT flgH 695716 - 696381 + | flagellar basal body L-ring protein TERM 743 697149 - 697177 + G 71 -6.6 -4.14541 | gap 1, opp_overlap 697159 ACGTTATGGTCAATG CGCCACAAGACGC CGGT GCG-CGCGTGGCG TTTATGTCATTGCTG flgI 696395 - 697570 + | flagellar basal body P-ring protein TERM 744 697624 - 697601 - g 74 -7.4 -4.26871 | gap 1, opp_overlap 697603 697604, overlap 697602 697604 GAAGCCATTAATAAA TCATCCCCGGT GAT ACCGGGGA-GT TTTGTCGGTGACCTC TERM 745 697623 - 697602 - g 71 -10.9 -3.154 | gap 1, opp_overlap 697603 697604, overlap 697601 697604 AAGCCATTAATAAAT CATCCCCGGT GAT ACCGGGGA-G TTTTGTCGGTGACCT TERM 746 697603 - 697623 + G 91 -11.1 -4.42653 | opp_overlap 697602 697601 697604, overlap 697604 AGCCATTAATAAATC ATCCCCGGT GAT ACCGGGGAG TTTTGTCGGTGACCT TERM 747 697604 - 697622 + G 86 -14.6 -3.2511 | opp_overlap 697604 697602 697601, overlap 697603 GCCATTAATAAATCA TCCCCGGT GAT ACCGGGGA GTTTTGTCGGTGACC TERM 748 697622 - 697604 - g 86 -14.6 -3.12942 | opp_overlap 697603 697604, overlap 697602 697601 GCCATTAATAAATCA TCCCCGGT GAT ACCGGGGA GTTTTGTCGGTGACC flgJ 697580 - 697873 + | peptidoglycan hydrolase flgK 697986 - 699347 + | flagellar hook-associated protein FlgK TERM 749 700150 - 700137 - g 80 -2.4 -5.44721 | ATTACTGCAAAAAAA CCAT GAAGAG ATGG AGCTGTCGAATGCCA flgL 699376 - 700299 + | flagellar hook-associated protein FlgL YPN_0591 700311 - 701324 + | hypothetical protein TERM 750 701405 - 701438 + T 82 -6 -5.00616 | gap 1, overlap 701406 701407 TACCCGTTATTCTTC AAGCTG-CATGTGCG TTGAT CGCACATGTCAGCCG TTTTTTCAGCCCCAG TERM 751 701406 - 701437 + T 78 -9.5 -3.60048 | gap 1, overlap 701405 701407 ACCCGTTATTCTTCA AGCTG-CATGTGCG TTGAT CGCACATGTCAGCC GTTTTTTCAGCCCCA TERM 752 701407 - 701436 + T 91 -13 -2.75708 | gap 1, overlap 701406 701405 CCCGTTATTCTTCAA GCTG-CATGTGCG TTGAT CGCACATGTCAGC CGTTTTTTCAGCCCC YPN_0592 701934 - 701488 - | hypothetical protein YPN_0593 702961 - 701915 - | regulatory protein TERM 753 702638 - 702626 - G 71 -5.5 -4.43859 | GATAATTTCACAAAA GCTGG CAT CCAAC AGATAACCTATCTTG TERM 754 703432 - 703416 - H 72 -7.3 -3.99805 | opp_overlap 703416, overlap 703421 703425 TCTTAAAAATTTAAA GCAGATT AAT AACCTGC GTTATTAAAATACTA YPN_0594 703587 - 704810 + | flagellin TERM 755 704853 - 704899 + F 100 -15.4 -3.05384 | gap 1, opp_overlap 704858, overlap 704858 704863 GGGGTACTCAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 756 704858 - 704894 + F 77 -10.3 -3.19192 | gap 1, opp_overlap 704858, overlap 704853 704863 ACTCAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 757 704893 - 704858 - f 93 -12.7 -3.06915 | opp_overlap 704858 704853 704863 ACTCAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 758 704863 - 704873 + F 75 -5.4 -4.88736 | opp_overlap 704858, overlap 704858 704853 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPN_0595 704883 - 705419 + | insertion element IS1661 DNA-binding protein TERM 759 706239 - 706221 - g 71 -11 -2.73735 | overlap 706211 706209 706232 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPN_0596 705473 - 706258 + | transposase for insertion sequence IS1661 TERM 760 708635 - 708598 - g 86 -11.3 -4.0274 | CTGAGCATCAAAGAA GCCACTACTCCTGACGC AGAA GCACCAGAAGCAGCAGC AGAGTAATTAAGTCA YPN_0597 706447 - 708642 + | polynucleotide phosphorylase/polyadenylase TERM 761 708654 - 708685 + F 100 -13.8 -3.48276 | opp_overlap 708651 GTAATTAAGTCATTC CACAGCTCCTTGCT CATC GGTAAGGGGCTGTG TTATCTCAGGGGCGG TERM 762 709531 - 709519 - g 73 -9.1 -3.78934 | opp_overlap 709518 TCTGGGGGACAAGAA CACCG CTT CGGTG CTGTTCAAACTGACG YPN_0598 708767 - 709651 + | lipoprotein NlpI TERM 763 710629 - 710611 - g 72 -3.8 -4.7497 | CGTACGTACCAAAAA TGCGACCT TGG AAGTAGCA GAAGCCCTTGAGCGT YPN_0599 709838 - 711832 + | ATP-dependent RNA helicase DeaD TERM 764 711869 - 711884 + G 100 -10.4 -5.65177 | opp_overlap 711869 GATTAAACGTAAAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCTAT TERM 765 711884 - 711869 - g 100 -10.4 -4.82855 | opp_overlap 711869 GATTAAACGTAAAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCTAT YPN_0600 711852 - 712025 + | hypothetical protein YPN_0601 712068 - 712436 + | hypothetical protein YPN_0602 712460 - 712771 + | transcriptional regulatory protein TERM 766 712803 - 712788 - T 100 -10.4 -4.82855 | GATTAAACGTAAAAA CCAGCC TTCG GGCTGG TTCAGACTGCTGACA TERM 767 712893 - 712867 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 712876, overlap 712868 712883 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 768 712894 - 712868 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 712876, overlap 712867 712883 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 769 712974 - 712989 + T 100 -10.4 -5.61596 | opp_overlap 712974 GTCAACAACCTCAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCGGT TERM 770 712989 - 712974 - T 82 -10.4 -3.72051 | opp_overlap 712974 GTCAACAACCTCAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCGGT YPN_0603 714081 - 713026 - | hypothetical protein TERM 771 715004 - 714972 - g 70 -2 -4.9138 | ATTAGCCAAAGAAAA TGGTGTGTC-GCAGCA AGA TGCTGATGACGC-CCA AACCAGCTATCAGCA TERM 772 715056 - 715046 - g 70 -2.4 -5.00884 | opp_overlap 715047 ATGTGGCCGAAAAAA CTGC TGC GCTG GAAACGGCGCGTATC YPN_0604 714589 - 715749 + | multidrug efflux protein TERM 773 717419 - 717432 + G 73 -5.9 -4.56597 | GTGTGTTGTTTATTC GCCTG CCAA CGGGC TTTTTACCGACCGAA YPN_0605 715753 - 718878 + | multidrug efflux protein TERM 774 719157 - 719123 - g 81 -13.6 -3.1247 | gap 1 ATTGCCGATATCGAA GCGGCCCG-TGCGCA ATATGG TGTGCAACGGGCCGC CCAGATACCAACGGT TERM 775 719328 - 719310 - g 83 -3 -5.41143 | opp_overlap 719310 719313, overlap 719311 TATTTGGTAAAAAAA GCAGCTTG TCT CATGCTGA ATTTGAAACCTATCT YPN_0606 718880 - 720286 + | outer membrane efflux lipoprotein TERM 776 720411 - 720367 - T 100 -16 -4.183 | gap 1, opp_overlap 720373 720376, overlap 720373 TTAAGCGTTAATAAA CATG-AATAACAGGGAGGCCA GCAA TGACCTCCCTGTTATTACTTG ATAAGGCAAGGCCGT TERM 777 720404 - 720373 - T 100 -18.2 -3.54382 | opp_overlap 720373 720376, overlap 720367 GTTAATAAACATGAA TAACAGGGAGGCCA GCAA TGACCTCCCTGTTA TTACTTGATAAGGCA TERM 778 720373 - 720404 + T 100 -16 -3.39895 | opp_overlap 720373 720367, overlap 720376 GTTAATAAACATGAA TAACAGGGAGGCCA GCAA TGACCTCCCTGTTA TTACTTGATAAGGCA TERM 779 720376 - 720401 + T 100 -13.3 -3.83844 | opp_overlap 720373 720367, overlap 720373 AATAAACATGAATAA CAGGGAGGCCA GCAA TGACCTCCCTG TTATTACTTGATAAG YPN_0607 721305 - 720427 - | hypothetical protein YPN_0608 722312 - 721317 - | protease TERM 780 722269 - 722243 - G 71 -7.3 -4.11295 | gap 1, opp_overlap 722242 722241, overlap 722233 TCAAACCGATATAAA CCGC-ATCGGCA CCAT TGTCGATTGCGG CCTTTAATGCAGGTA YPN_0609 722547 - 722422 - | hypothetical protein TERM 781 722877 - 722894 + GH 70 -7.7 -3.58343 | opp_overlap 722876 CTCGTGAGCCAACAG GCTGACG CCGA TGTCAGC TTTAGCGGTGATGCC YPN_0610 722547 - 723149 + | lipid carrier protein YPN_0611 723143 - 723649 + | acetyltransferase YPN_0612 724111 - 723824 - | GIY-YIG nuclease superfamily protein TERM 782 723859 - 723875 + g 100 -8 -5.32396 | TTGTCAATAACCTCG GCTGGT CAATC ACCAGC TTTTCTTTTTGCTGT YPN_0613 726360 - 724342 - | hypothetical protein TERM 783 724517 - 724503 - G 76 -5.6 -4.75174 | overlap 724505 CATTCAAGTCAAAAA CACAGG TGA CCTGAG CTGCTGGTTGTTGGT YPN_0614 727607 - 726384 - | hypothetical protein YPN_0615 728168 - 729481 + | sugar binding protein TERM 784 729722 - 729746 + G 72 -8.5 -3.95653 | CACGTTGTTATATGT CCTGGTCACCA TGG TGGTGGCCGCG TTTATCGCCTTCTTT YPN_0616 729489 - 730373 + | sugar transport system, permease protein TERM 785 730366 - 730356 - f 77 -4.6 -5.03314 | CTCACCTTGAAAAAA CGGA TCG CCCG TTACTAACCGAGCCG YPN_0617 730392 - 731231 + | sugar transport system, permease protein TERM 786 731593 - 731581 - g 71 -5.5 -4.4773 | TGATATTAACCAAAA GGTCG AAT CAACC GCCGAGTTGCTCGGT TERM 787 731595 - 731607 + G 70 -9.1 -3.5393 | opp_overlap 731593 AGGTCGAATCAACCG CCGAG TTG CTCGG TTTACAAGCGCTGCT TERM 788 732198 - 732208 + G 70 -8.2 -3.77209 | overlap 732195 TCTTTTGCAGCACGG GCGG GGG CCGC TTTACCTCTGTATTT YPN_0618 731243 - 732337 + | sugar ABC transporter, ATP-binding protein TERM 789 732460 - 732474 + G 73 -9.2 -3.67597 | TTTTCACCTCTGCAA CCGGCG TTA CGTCGG TTATTGAGTGAAGCG YPN_0619 732352 - 733518 + | hypothetical protein YPN_0620 733617 - 734060 + | hypothetical protein YPN_0621 734212 - 734850 + | hypothetical protein phnP 735615 - 734863 - | carbon-phosphorus lyase complex accessory protein YPN_0623 736187 - 735606 - | ribose 1,5-bisphosphokinase YPN_0624 737323 - 736187 - | PhnM protein YPN_0625 738039 - 737320 - | phosphonates transport ATP-binding protein TERM 790 737425 - 737436 + g 71 -7.2 -4.02051 | opp_overlap 737416 737425 737424 GAAAATCCCGACAAT CGCG GCAC CGCG TTGTTTAGCTTCATC TERM 791 738176 - 738151 - R 81 -11.9 -2.52543 | gap 1, opp_overlap 738151 738173 AGTGCCTGCAATCGA GCAGGA-GGGCA GGC CGCCCCTCCTGC ACCTGCGGCTTTGCT TERM 792 738204 - 738216 + r 71 -9.1 -3.30605 | opp_overlap 738202 GCTCAACATCCAACG CCCAC TAC GTGGG TTCCCTTCTTCATCT TERM 793 738249 - 738280 + r 100 -12.4 -3.5393 | TCGGCTTTACGGGCT GGCTTTAACCTACA TCCC TGTAGGTTGACGCC TTTCGCCGACGTCCT phnK 739219 - 738428 - | phosphonates transport ATP-binding protein YPN_0627 740100 - 739219 - | PhnJ protein YPN_0628 741271 - 740093 - | PhnI protein YPN_0629 741495 - 741271 - | carbon-phosphorous lyase protein YPN_0630 741896 - 741429 - | PhnH protein YPN_0631 742372 - 741896 - | PhnG protein TERM 794 742215 - 742197 - G 87 -8 -4.79352 | overlap 742198 TCACCGAGAATAAAA CGGCGGCC GGT GGCCCCCA TCCGCGCCTGCAATT YPN_0632 743098 - 742373 - | putative transcriptional regulator nrdG 743860 - 743426 - | anaerobic ribonucleotide reductase-activating protein TERM 795 743955 - 743984 + r 74 -9.2 -3.33492 | GGTGACTCAGCCCAT CAGCAGGCCTCG CATTGA CGAGGCCTGAGG TTGTCGCCTACCTAC YPN_0634 746205 - 744067 - | anaerobic ribonucleoside triphosphate reductase TERM 796 745233 - 745243 + g 76 -6.8 -4.56597 | GTTTTGGGAATACCG CCGT TTT ACGG TTTTTACCCAAGCCC TERM 797 746274 - 746251 - R 78 -10.2 -3.24245 | overlap 746247 TTATCCACAAGGCAA CCCGCAGCAC ATCA GGGCTGCGAG GGGGATGTGGATGCT TERM 798 746434 - 746447 + r 75 -5.3 -4.82901 | TCCCTGTTCAGTACG TCACA GAAT TGTGA TTTTTATGGCGAGGG YPN_0635 747298 - 746582 - | ABC transporter, ATP-binding protein YPN_0636 748193 - 747285 - | ABC transporter transporter, ATP-binding protein TERM 799 747738 - 747771 + gr 86 -11.7 -3.28712 | opp_overlap 747740, overlap 747740 GGCCAGTGCATTTAA TACCCGTTCATGCGC ATCA GCGCTTGAAAGGGTG TTATGCAGCAACAGA TERM 800 747769 - 747740 - GR 86 -12.1 -3.09327 | opp_overlap 747738 747740 CCAGTGCATTTAATA CCCGTTCATGCGC ATCA GCGCTTGAAAGGG TGTTATGCAGCAACA TERM 801 747740 - 747769 + gr 86 -12.1 -3.21276 | opp_overlap 747740, overlap 747738 CCAGTGCATTTAATA CCCGTTCATGCGC ATCA GCGCTTGAAAGGG TGTTATGCAGCAACA YPN_0637 748992 - 748156 - | transporter, permease protein YPN_0638 750060 - 749011 - | transporter, permease protein TERM 802 750043 - 750012 - G 76 -4.3 -4.94243 | opp_overlap 750012 750014 750017, overlap 750014 750017 GTAAAAAAACCAAAA GATGACGCCGGGA GGGGGT TCCCGGCGTGGTA TTTAATGCTACAGAC TERM 803 750014 - 750041 + g 72 -9.8 -3.48024 | opp_overlap 750014 750012 750017, overlap 750012 750017 AAAAAAACCAAAAGA TGACGCCGGGAG GGGG TTCCCGGCGTGG TATTTAATGCTACAG TERM 804 750038 - 750017 - G 78 -13 -3.01018 | opp_overlap 750014 750012 750017, overlap 750014 750012 AAAACCAAAAGATGA CGCCGGGA GGGGGT TCCCGGCG TGGTATTTAATGCTA TERM 805 750017 - 750038 + g 80 -13.7 -2.88215 | opp_overlap 750017 750014 750012, overlap 750014 750012 AAAACCAAAAGATGA CGCCGGGAG GGGG TTCCCGGCG TGGTATTTAATGCTA YPN_0639 750542 - 750156 - | ABC transporter, periplasmic oligo-dipeptide/nickel binding protein YPN_0640 751723 - 750551 - | hypothetical protein TERM 806 750996 - 751016 + g 70 -3.2 -4.78107 | gap 1 TGAATTAACAGGCGG CGGGCACTG GGGT CAG-GCACG TTTTTAATAATAATA TERM 807 751915 - 751899 - H 75 -5.2 -4.79352 | TTAGTGATAATAAAA TATTCC GTAAA GGAATA ATGATGAGGTTATTG TERM 808 751997 - 752023 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 751986, overlap 751992 751998 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 809 751998 - 752024 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 751986, overlap 751992 751997 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_0641 752362 - 752820 + | hypothetical protein YPN_0642 754134 - 753127 - | ornithine carbamoyltransferase subunit I YPN_0643 754346 - 754777 + | hypothetical protein YPN_0644 755490 - 754987 - | acetyltransferase TERM 810 755606 - 755568 - R 100 -14.7 -4.66833 | overlap 755569 GTGCAATGGTAAAAA GCAGGGGCCATGATAGT GAATA ATTATCATGGCCCCTGG TGACGACTGACTGAT TERM 811 755605 - 755569 - R 100 -18.2 -3.39618 | overlap 755568 TGCAATGGTAAAAAG CAGGGGCCATGATAGT GAATA ATTATCATGGCCCCTG GTGACGACTGACTGA valS 758530 - 755633 - | valyl-tRNA synthetase YPN_0646 758992 - 758543 - | DNA polymerase III subunit chi TERM 812 759029 - 759012 - R 95 -11.3 -3.80625 | TCTCTACAACGTAAA GGGCACA AAAA TGTGCCC TCAGACTGCTAACAA YPN_0647 760654 - 759143 - | leucyl aminopeptidase YPN_0648 760934 - 762028 + | hypothetical protein TERM 813 762646 - 762629 - g 73 -3.4 -5.0095 | gap 1 AAAAAGACAATAAAA CCTGGCG GTTAT CGC-AGG TCGATGAATCTGATT YPN_0649 762028 - 763104 + | hypothetical protein TERM 814 763310 - 763325 + F 100 -6.8 -5.60993 | opp_overlap 763310 TAGTATGAAAATTAA GTCACC GCAA GGTGGC TTTTTTTGTGCCCAG TERM 815 763363 - 763345 - f 100 -16 -4.36914 | opp_overlap 763345 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 816 763345 - 763363 + F 100 -16 -3.07307 | opp_overlap 763345 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0650 763476 - 763934 + | transposase for the IS1541 insertion element TERM 817 764012 - 764036 + F 88 -9.9 -4.20783 | opp_overlap 764015, overlap 764014 764015 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGCCTAAAAT TERM 818 764014 - 764034 + F 100 -12.5 -3.70307 | opp_overlap 764015, overlap 764012 764015 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGCCTAAA TERM 819 764015 - 764033 + F 100 -16 -2.81702 | opp_overlap 764015, overlap 764014 764012 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCCTAA TERM 820 764033 - 764015 - f 100 -16 -4.8048 | opp_overlap 764015 764014 764012 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCCTAA TERM 821 765223 - 765244 + G 70 -8.7 -3.57128 | overlap 765218 AAGTTGAAGTCTGTG GCCACGGTT TCAG AACCATGGC TTGTAGTTCATTGAT YPN_0651 764202 - 765461 + | integrase TERM 822 765478 - 765502 + F 100 -8 -5.39755 | TAAAAAAAGTTTCTG TAAGGCATGT ATCTG ATATGCCTTA TTTTTTCTAATTGTG TERM 823 765905 - 765939 + G 70 -8 -3.70902 | gap 1 CTACTTAATTGATGG TCAGCAGCGG-GTCA CTTCCT TGACACTGTTGCTGA TTTGCCTGTACCGAG TERM 824 767222 - 767244 + G 83 -9.2 -4.4261 | opp_overlap 767222, overlap 767217 GCAGGAATTTCAAGA TTGGCGCAAT CAT GTTGCGTCAA TTTTACTCTTACCAG YPN_0652 765543 - 767525 + | hypothetical protein TERM 825 768513 - 768488 - g 82 -11.3 -3.68619 | TGGAATTTACTGAAA TTACATCAGAG GATG CTCTGATGCAA AACCGCTCAGAGTTA YPN_0653 767518 - 768627 + | hypothetical protein YPN_0654 769457 - 768678 - | transposase/IS protein TERM 826 769376 - 769390 + g 77 -11.4 -3.3506 | overlap 769389 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_0655 770479 - 769457 - | transposase for insertion sequence IS100 TERM 827 770501 - 770483 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_0656 770590 - 771048 + | transposase for the IS1541 insertion element TERM 828 771126 - 771150 + T 88 -9.9 -4.15222 | opp_overlap 771129, overlap 771128 771129 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTAAAACACAT TERM 829 771128 - 771148 + T 100 -12.5 -3.6761 | opp_overlap 771129, overlap 771126 771129 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTAAAACAC TERM 830 771147 - 771129 - T 100 -16 -4.8048 | opp_overlap 771129 771128 771126 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAAAACA TERM 831 771129 - 771147 + T 100 -16 -2.80244 | opp_overlap 771129, overlap 771128 771126 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAAAACA YPN_0657 771444 - 771238 - | zinc-binding protein TERM 832 771388 - 771365 - G 76 -3.1 -5.06414 | CGCTTGCAACAAAAA GGGCGAAAA GGGCTT TGTTCACCC CAGATAACGACTTTT YPN_0658 772382 - 771630 - | hypothetical protein coaE 772999 - 772379 - | dephospho-CoA kinase YPN_0660 773295 - 774338 + | guanosine 5'-monophosphate oxidoreductase YPN_0661 775964 - 774765 - | type IV pilin biogenesis protein YPN_0662 777517 - 775961 - | hypothetical protein TERM 833 777236 - 777215 - GR 71 -8.7 -3.28712 | opp_overlap 777215 777218, overlap 777218 TCCCTTTTGGGATAA CAACGCGCT ATTT AGCCCGTTG TTAATACTACTGTTT TERM 834 777215 - 777236 + gr 71 -8.7 -3.25304 | opp_overlap 777215 777218, overlap 777218 TCCCTTTTGGGATAA CAACGCGCT ATTT AGCCCGTTG TTAATACTACTGTTT YPN_0663 777956 - 777492 - | putative major pilin subunit TERM 835 777986 - 777998 + r 79 -3.3 -5.30155 | overlap 777987 TGTTTAAGAAACTGG AGGCA GGG TGCCG TTTTTTAATTCATAC YPN_0664 779067 - 778159 - | quinolinate phosphoribosyltransferase YPN_0665 779180 - 779731 + | N-acetyl-anhydromuranmyl-L-alanine amidase TERM 836 780188 - 780210 + G 74 -3.5 -4.94058 | overlap 780190 780204 GGTGCTGGTTTGGGG GATTTTGCA ATTAG TGCAAAATA TTTTGTTTGGCTTCC YPN_0666 780021 - 780875 + | regulatory protein AmpE TERM 837 781233 - 781272 + T 100 -14.4 -3.06312 | gap 1, opp_overlap 781238 CCATAGGTACTTTGT CAATAGCCTAGGCCAGCAC TAA GTGCTGGCCTAGG-TAGGG TTAACTAGCGGATTT TERM 838 781268 - 781238 - T 100 -19.8 -3.02511 | opp_overlap 781233 GGTACTTTGTCAATA GCCTAGGCCAGCAC TAA GTGCTGGCCTAGGT AGGGTTAACTAGCGG YPN_0667 782705 - 781308 - | aromatic amino acid transport protein TERM 839 782227 - 782207 - G 74 -4.7 -4.88405 | opp_overlap 782207 782210, overlap 782202 782219 AACCGCCAAATAAAA TCATCGCAA TAA TCGCGATCA CTTTAATGATGGCAA TERM 840 782501 - 782466 - G 70 -8.4 -3.72141 | gap 1, opp_overlap 782479 ATATTTATACGCAAA GTGGCTAAAGGAACCGG CTA CAGGTTC-TTCAACCAC CATTTCGCCTAGCTG TERM 841 783254 - 783280 + H 71 -6.8 -4.08689 | overlap 783250 TTAGTTAAGTGTGAA TTTAAATTCAAA AAA TATGAATTTAAA TTTAATTATTAAATG TERM 842 783607 - 783630 + G 72 -9.6 -3.36273 | opp_overlap 783611 CCCAAACTATCAGAT GTAATCGAGC AGCA GCTCGAATAC TTGATCTTGGAAGGG pdhR 783568 - 784332 + | transcriptional regulator PdhR aceE 784528 - 787191 + | pyruvate dehydrogenase subunit E1 TERM 843 787505 - 787472 - g 100 -6.6 -5.25772 | gap 1 AAAGCAGAAGAAAAA CCGGCGGCGCCTGCT CAGGT AGC-GGCTCCGGCAG CCTCTGCGGCGAAAA YPN_0670 787205 - 788734 + | dihydrolipoamide acetyltransferase TERM 844 788739 - 788763 + F 100 -17.2 -3.54743 | opp_overlap 788735, overlap 788718 788726 788742 TGGTGATGTAATCGC CAAGGCCGGC TTCGT GCCGGCCTTG TTGTGGTTACTGCTC TERM 845 788742 - 788760 + F 100 -13.1 -3.90241 | opp_overlap 788735, overlap 788718 788739 788726 TGATGTAATCGCCAA GGCCGGC TTCGT GCCGGCC TTGTTGTGGTTACTG TERM 846 789951 - 789961 + G 76 -5.4 -4.81551 | opp_overlap 789941 789951 GCAACTGCGCACCAA TGTG CCA CACA TTTTTGCTATCGGTG YPN_0671 789040 - 790464 + | dihydrolipoamide dehydrogenase TERM 847 790555 - 790536 - f 83 -9.2 -4.02396 | opp_overlap 790536 TAAATAAAAGTGAAA CGGTCCCT ACAT AGGGGCCG TTTTTTTTGTGCCCA TERM 848 790536 - 790555 + F 100 -11.4 -5.93809 | opp_overlap 790536 TAAATAAAAGTGAAA CGGTCCCT ACAT AGGGGCCG TTTTTTTTGTGCCCA TERM 849 790594 - 790576 - f 100 -16 -4.36914 | opp_overlap 790576 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 850 790576 - 790594 + F 100 -16 -3.07307 | opp_overlap 790576 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0672 790707 - 791165 + | transposase for the IS1541 insertion element TERM 851 791239 - 791271 + F 100 -11.3 -4.16943 | opp_overlap 791246, overlap 791243 791245 791246 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTAGCCTATACGC TERM 852 791243 - 791267 + F 100 -9.9 -4.67651 | opp_overlap 791246, overlap 791239 791245 791246 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTAGCCTAT TERM 853 791245 - 791265 + F 100 -12.5 -3.94471 | opp_overlap 791246, overlap 791243 791239 791246 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTAGCCT TERM 854 791246 - 791264 + F 100 -16 -2.95598 | opp_overlap 791246, overlap 791245 791243 791239 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTAGCC TERM 855 791264 - 791246 - f 100 -16 -4.8048 | opp_overlap 791246 791245 791243 791239 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTAGCC TERM 856 791857 - 791842 - g 100 -6.8 -5.2189 | overlap 791844 TGAATCATTAAAAAA TCCGCC TGCG GGCGAA GAAGAATTCCTATTA TERM 857 792134 - 792118 - g 70 -9.5 -3.30124 | GCTGATGTTCGATAA CTTCTAC GAC GTAGAAG ATAAAGCCAAAGCTG TERM 858 792151 - 792140 - g 71 -5.8 -4.28188 | GACGTAGAAGATAAA GCCA AAGC TGGC AATCCGTATGCAAAA YPN_0673 791735 - 794332 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 859 794385 - 794405 + F 100 -16.1 -4.45168 | opp_overlap 794385, overlap 794403 TCGCATCAGCTAAAA CGGGGGGCC ATT GGCCTCCCG TTTCTATTTTAAAAA TERM 860 794405 - 794385 - f 100 -13.9 -4.21194 | opp_overlap 794385 794403 TCGCATCAGCTAAAA CGGGGGGCC ATT GGCCTCCCG TTTCTATTTTAAAAA YPN_0674 794631 - 794990 + | hypothetical protein YPN_0675 796009 - 795101 - | hypothetical protein TERM 861 795251 - 795274 + g 86 -5.2 -5.27477 | gap 1, opp_overlap 795250 CGTGAAATAGGATAG GGCCGCGACCA GTG TGG-CGTTGCC TTTTTTCATTGCGCT TERM 862 795465 - 795449 - G 82 -7.9 -4.7373 | opp_overlap 795457 GCAGGCGATTAAAAA CAGTGGC AGC GCCCCTG GCCCTTGGCTATATA TERM 863 796373 - 796394 + r 89 -10.2 -3.94746 | GACGAGCCGTTTTTA GGTGATCG CCTGAA CGATCACC TTTAATTCCGTATCA YPN_0676 797241 - 796447 - | S-adenosylmethionine decarboxylase YPN_0677 798209 - 797319 - | spermidine synthase TERM 864 798111 - 798121 + g 73 -3.2 -5.00616 | opp_overlap 798102 798101 AAAAATCACCAGGTC CTGA TGC TCGG TTTTTTCGCGGAACA YPN_0678 798673 - 798326 - | hypothetical protein YPN_0679 798990 - 800591 + | multicopper oxidase TERM 865 800596 - 800619 + F 100 -18.2 -5.24129 | TCAGCGCCTGAGCCA CACCCCGGTC GGTT GACCGGGGTG TTTTTTATAAAACCG YPN_0680 800802 - 801347 + | hypoxanthine phosphoribosyltransferase YPN_0681 802376 - 801501 - | carbonic anhydrase TERM 866 801630 - 801644 + g 79 -7.8 -4.57341 | opp_overlap 801619 AATACCATATACCCA GCCGTG GAT CATGGC TTTTTGCCCGCGCTT YPN_0682 802399 - 803325 + | ABC transporter, ATP-binding protein YPN_0683 803322 - 804092 + | ABC transporter, integral membrane protein TERM 867 804623 - 804611 - g 100 -3.4 -6.04378 | AAAGCACAAAAAAAA CAAC GACAT GTTG GGCGATTTAAATAAG YPN_0684 804299 - 804637 + | hypothetical protein YPN_0685 804534 - 805613 + | hypothetical protein YPN_0686 806142 - 805762 - | aspartate alpha-decarboxylase TERM 868 806428 - 806446 + r 78 -10.3 -3.2963 | GCTCATCGGCGGTCA CGGGTTC CGAGC GAACCCG TTATGGGGGAATGCT panC 807407 - 806553 - | pantoate--beta-alanine ligase TERM 869 807259 - 807245 - G 76 -2.8 -5.1356 | opp_overlap 807257, overlap 807247 GCGGATTAACAAAAA TAGTCA CCA CGACCA CGTCAGCGCGGGTTT panB 808292 - 807495 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase YPN_0689 809040 - 808561 - | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase pcnB 810523 - 809048 - | poly(A) polymerase I TERM 870 809612 - 809650 + g 71 -6.7 -4.22948 | opp_overlap 809614 AAAATTACGGGCAAT CAGTGGGAATAGCGGCT GGAAA AGCTGGTATTCGCACAG TTTTAAATAGGTTTT TERM 871 810480 - 810501 + g 76 -5.7 -4.66537 | GGCACTTTATCTTTA CGGGCCTTG TCAT CACGGACCG TTTTGTCTTCGCGGA YPN_0691 811577 - 810612 - | glutamyl-Q tRNA(Asp) synthetase TERM 872 811787 - 811829 + Gr 81 -10.7 -3.3676 | gap 1, opp_overlap 811793, overlap 811795 811820 GAAGGGGTCCAACAG T-TCAAACACGGTGCCGGAG AGGG CTCTGGCACCGTGTTACACA TTATGCCGTGTTACA TERM 873 811822 - 811793 - gR 100 -17.9 -3.66803 | opp_overlap 811787 811795 811820 GTCCAACAGTTCAAA CACGGTGCCGGAG AGGG CTCTGGCACCGTG TTACACATTATGCCG TERM 874 811795 - 811820 + Gr 100 -16.9 -3.07233 | opp_overlap 811793, overlap 811787 CCAACAGTTCAAACA CGGTGCCGGAG AGGG CTCTGGCACCG TGTTACACATTATGC YPN_0693 812312 - 811857 - | DnaK transcriptional regulator DksA YPN_0692 811743 - 812426 + | hypothetical protein YPN_0694 813342 - 812482 - | sugar fermentation stimulation protein A TERM 875 812918 - 812929 + g 91 -4.4 -5.53288 | opp_overlap 812918 TTGTAACCAGATAAT TCAG CAAT CTGA TTTTTTTCAATTGCC YPN_0695 813907 - 813332 - | 2'-5' RNA ligase YPN_0696 813948 - 816509 + | ATP-dependent RNA helicase HrpB mrcB 816618 - 819092 + | penicillin-binding protein 1b TERM 876 819115 - 819148 + F 100 -8.7 -5.95539 | overlap 819116 819117 GGTCAATAAAATGTG ACGGCGGGCGTGGTT TACA GACTGCGCCCGCCAA TTTTTTTCTTTGCGC TERM 877 819116 - 819147 + F 100 -12.2 -4.15696 | overlap 819115 819117 GTCAATAAAATGTGA CGGCGGGCGTGGTT TACA GACTGCGCCCGCCA ATTTTTTTCTTTGCG TERM 878 819117 - 819146 + F 100 -15.7 -3.07791 | overlap 819116 819115 TCAATAAAATGTGAC GGCGGGCGTGGTT TACA GACTGCGCCCGCC AATTTTTTTCTTTGC TERM 879 820173 - 820195 + G 76 -3.2 -5.12172 | overlap 820164 820177 GGTATTTTACCGCAC CCGGCTGGCG GTG CGCCGGTAAG TTTTGTTTATTAATG YPN_0698 819414 - 820208 + | iron-hydroxamate transporter ATP-binding subunit YPN_0699 820208 - 821296 + | iron-hydroxamate transporter substrate-binding subunit TERM 880 823244 - 823256 + G 76 -3.3 -5.20222 | TATTAGCGACATTTA TCGGG GCG CCCTA TTTTGTTTATTTGCT YPN_0700 821293 - 823290 + | iron-hydroxamate transporter permease subunit TERM 881 823411 - 823394 - T 80 -9.9 -3.58343 | opp_overlap 823388 823387 GTCAGCAGTCTGAAA TCTCCTC CGGA GAGGAGA TTAGAGGTTATTGAC YPN_0701 824944 - 823664 - | glutamate-1-semialdehyde aminotransferase TERM 882 823916 - 823883 - G 73 -9 -3.69934 | gap 2, opp_overlap 823883 823911 AAAGAATAGGCCAAA CATCCCACCGACGTGG TTAA CCAC--CAGTGGGATG TTCTCCTCTTTAGCG TERM 883 825871 - 825890 + G 71 -11.4 -2.83522 | opp_overlap 825863, overlap 825870 TTAGCAACCGGTGCA GCCGCAGG GCTG TCTGCGGC ATTTAATGCCCCGCT TERM 884 826068 - 826084 + G 70 -3 -4.78597 | ACTCAGTGATGCTCC GCTAAA CACCC TTTGGC TTTATTTATTATTAG TERM 885 826308 - 826323 + G 71 -7.6 -4.0498 | GGCAGCCGGTAATTT CAGCAT CGGC ATGCTG TTGTTCATTTTTATC YPN_0702 825325 - 826761 + | chloride channel protein YPN_0703 826897 - 827241 + | iron-sulfur cluster insertion protein ErpA YPN_0704 827397 - 827296 - | hypothetical protein TERM 886 827504 - 827481 - R 100 -8.8 -5.03715 | opp_overlap 827481 AGCATCGCTAAAAAA CCGCGACCAT GAGA ATGGCAGCGG TTTTTTATGCTCAAA TERM 887 827481 - 827504 + r 89 -6.6 -5.31275 | opp_overlap 827481 AGCATCGCTAAAAAA CCGCGACCAT GAGA ATGGCAGCGG TTTTTTATGCTCAAA YPN_0705 828157 - 827543 - | hypothetical protein YPN_0706 828999 - 828157 - | vitamin B12-transporter protein BtuF YPN_0707 829700 - 828999 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase dgt 829994 - 831514 + | deoxyguanosinetriphosphate triphosphohydrolase YPN_0709 831712 - 833157 + | serine endoprotease TERM 888 833271 - 833295 + T 100 -9.3 -5.15526 | TTCCATCTAGCTCAA GGGCACAGT TTATCTC GCTGTGCCC TTTTTGGTTTTCTAT YPN_0710 836133 - 833332 - | hybrid sensory histidine kinase BarA YPN_0711 836244 - 836426 + | hypothetical protein YPN_0712 836442 - 836567 + | hypothetical protein TERM 889 838001 - 837975 - g 73 -5 -4.68994 | ATTATCACTCAAAAA CAGCCAAACCCA AGC CGTGACTGGCTG AATCCTAACCTCGGT TERM 890 838426 - 838444 + G 71 -6 -4.36914 | GTTGCCAGCCGATCC CCGGTGAT CAA ATTATCGG TTTTATCACGCAAGG relA 836577 - 838811 + | GDP/GTP pyrophosphokinase mazG 839013 - 839855 + | nucleoside triphosphate pyrophosphohydrolase YPN_0715 840067 - 841704 + | CTP synthetase TERM 891 841719 - 841742 + F 95 -13.1 -3.02109 | AAATATTTGGTGGTA GGGGGCGGC TGAGAT GTCGCCCCC TCTGTCTGGAGTTTT eno 841785 - 843080 + | phosphopyruvate hydratase TERM 892 843171 - 843146 - f 74 -10.5 -2.67166 | opp_overlap 843152, overlap 843152 AGTTAACTAATTAAT TAAAAACCCGC TTCG GCGGGTTTTTT TATGCGTTGATTTTG TERM 893 843152 - 843165 + F 100 -9.5 -5.66684 | opp_overlap 843146 843152 CTAATTAATTAAAAA CCCGC TTCG GCGGG TTTTTTTATGCGTTG TERM 894 843165 - 843152 - f 100 -9.5 -4.93547 | opp_overlap 843152, overlap 843146 CTAATTAATTAAAAA CCCGC TTCG GCGGG TTTTTTTATGCGTTG YPN_0717 843452 - 844057 + | superoxide dismutase (Cu-Zn) precursor TERM 895 844097 - 844076 - f 86 -10.2 -3.74077 | opp_overlap 844076 TCTGATACAGTTAAA CTGGCTAC CCGAGC GTAGCCAG TTTGGTGGAGGCCGG TERM 896 844076 - 844097 + F 82 -10.2 -3.72576 | opp_overlap 844076 TCTGATACAGTTAAA CTGGCTAC CCGAGC GTAGCCAG TTTGGTGGAGGCCGG TERM 897 844213 - 844230 + G 83 -5.5 -5.13741 | AGGGCGAGGGTTATT TCACTGG CGTT CCAGCGA TTTTTGTTCGCTTGC YPN_0718 844161 - 844832 + | hypothetical protein YPN_0719 845425 - 845066 - | 6-pyruvoyl tetrahydrobiopterin synthase family protein TERM 898 846794 - 846780 - g 71 -6.4 -4.431 | overlap 846782 846783 TATTGACGGACAAAA TATGCC ACT GGCACA GGCGCTGCTCAGTCA cysJ 845818 - 847656 + | sulfite reductase subunit alpha YPN_0721 847656 - 849386 + | sulfite reductase subunit beta YPN_0722 849383 - 849850 + | hypothetical protein YPN_0723 849825 - 850109 + | phosphoadenylyl-sulfate reductase (thioredoxin) TERM 899 850153 - 850133 - T 100 -14.7 -3.14931 | TCTATGGCTCATTAA GAGGGCGCT AAG AGCGCCCCC AGACTGCTGACAAAC TERM 900 850240 - 850214 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 850223, overlap 850215 850230 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 901 850241 - 850215 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 850223, overlap 850214 850230 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPN_0724 850828 - 850352 - | hypothetical protein TERM 902 850713 - 850731 + g 71 -7.4 -4.11216 | opp_overlap 850713 ATATCGGGGAAATAA CCGTCGAA TCC TTCAACGG TTTTGAAGATGAAAA TERM 903 850731 - 850713 - G 78 -9.6 -3.91984 | opp_overlap 850713 ATATCGGGGAAATAA CCGTCGAA TCC TTCAACGG TTTTGAAGATGAAAA YPN_0725 851134 - 850934 - | hypothetical protein TERM 904 851152 - 851180 + H 100 -15.5 -3.1085 | GAACCCCCTGGTGAG CTACTTGTGGGTA TCA TACCTACAAGTAG TATTGAGTCAATTAG TERM 905 851264 - 851244 - H 93 -9.7 -4.37991 | opp_overlap 851243 851239 GAAAAACACGGAAAA GGGCGATCA TAA TGATCGTCC ATGCCTTGAATTTAT YPN_0726 851725 - 853143 + | siroheme synthase YPN_0727 853154 - 854062 + | sulfate adenylyltransferase subunit 2 cysN 854074 - 855591 + | sulfate adenylyltransferase subunit 1 YPN_0729 855593 - 856234 + | adenylylsulfate kinase YPN_0730 856425 - 856742 + | hypothetical protein ftsB 857056 - 857376 + | cell division protein FtsB ispD 857380 - 858105 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispF 858244 - 858732 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 906 858991 - 858977 - g 86 -11.4 -4.07885 | TATGCGGGGTTAAAA GACCGC CAT GCGGTC ACCGAACAGTGGTTT TERM 907 859708 - 859723 + G 77 -10.4 -3.54129 | TGAGCTGAGTTTCTG GCTCCC TGCG GGGAGC TTTGCGACCAGTGTG truD 858743 - 859792 + | tRNA pseudouridine synthase D TERM 908 860176 - 860191 + G 71 -6.8 -4.21631 | ATTACGATACGGCGG CGGCAG TGAC TTGCCG TTTATTACGTGCGTT surE 859770 - 860534 + | stationary phase survival protein SurE TERM 909 860605 - 860591 - g 76 -11.4 -3.22298 | opp_overlap 860576, overlap 860576 GGTATTCACGATGAA CGCCTG TTA CAGGCG ATCGAAGCGGTACCG TERM 910 861105 - 861120 + G 70 -3.2 -4.76075 | gap 1, overlap 861103 861102 861105 AATACCATATTGAGA CGG-TGG AAG CCGTCCG TTTTGTTCCTCTGGT pcm 860528 - 861154 + | protein-L-isoaspartate O-methyltransferase TERM 911 861810 - 861835 + G 76 -11.9 -3.01712 | opp_overlap 861796 ATGTTGCCATCATCT GGTGCGGTTGT CGCT ACAACAGCACC TGTTACCGCACCAAG YPN_0737 861258 - 862259 + | lipoprotein NlpD YPN_0738 862314 - 863312 + | RNA polymerase sigma factor RpoS TERM 912 863442 - 863415 - T 72 -7.1 -4.05193 | opp_overlap 863415 GATGAAACACAACAA CGGTGAACA GATAGATAAA TGTTCACCG TTTTTTTATGCCTTG TERM 913 863415 - 863442 + T 100 -7.1 -5.66684 | opp_overlap 863415 GATGAAACACAACAA CGGTGAACA GATAGATAAA TGTTCACCG TTTTTTTATGCCTTG YPN_0739 866219 - 863664 - | DNA mismatch repair protein TERM 914 865183 - 865201 + g 75 -8.8 -3.91897 | opp_overlap 865181 ATACGTTCTAAATCG CCCACTTG TCT CAAGGGGG TTTGTAACTCGGCGG TERM 915 866775 - 866757 - g 71 -6.6 -4.18351 | overlap 866761 AAAGCAAATCAGAAA TGAAGGGC ACT GCCCCGCA TCTGAGCTGAAAGAT TERM 916 866771 - 866761 - g 70 -8.2 -3.67022 | overlap 866757 CAAATCAGAAATGAA GGGC ACT GCCC CGCATCTGAGCTGAA YPN_0740 866716 - 866850 + | hypothetical protein YPN_0741 867468 - 867013 - | ribose-5-phosphate isomerase B TERM 917 867601 - 867625 + H 80 -10.1 -3.69364 | opp_overlap 867596 867606, overlap 867605 TAAAACCAAGTCTTT CAAAAGATCAC CAT GTGATCATTTG TTATATATATTCAAT TERM 918 867605 - 867621 + H 70 -5.1 -4.45484 | opp_overlap 867596 867606, overlap 867601 ACCAAGTCTTTCAAA AGATCAC CAT GTGATCA TTTGTTATATATATT TERM 919 867620 - 867606 - H 79 -8.6 -4.09739 | opp_overlap 867605 867601, overlap 867596 CCAAGTCTTTCAAAA GATCAC CAT GTGATC ATTTGTTATATATAT YPN_0742 867951 - 869066 + | Zinc-binding dehydrogenase YPN_0743 869130 - 869900 + | short chain dehydrogenase TERM 920 870019 - 870060 + G 91 -5.2 -5.52384 | CGATCCGGATCAGGT TGTGGAAGAGGCGATAAA AGGCTA TTTAGCGGCTTATCCACA TTTTTTTGCTAAAAC TERM 921 870199 - 870244 + G 71 -5.3 -4.58685 | overlap 870227 870228 TAAAAATATGCTGGA TGCCGTAGCGGTTGGTGAG ATCTTCTC CTCCCCGGCGGCTGGGGCA TTTTTAGAAGCGTTT YPN_0744 869987 - 870988 + | dihydroxyacetone kinase YPN_0745 870995 - 871669 + | hypothetical protein YPN_0746 872761 - 871790 - | transcriptional regulatory protein TERM 922 872090 - 872108 + g 73 -6 -4.4773 | AGGAGTGAACCAGCC CAGCTCTA CCA TATAGCTG TTTTCGTTCATATCA TERM 923 872953 - 872967 + r 75 -2.2 -5.33131 | overlap 872934 AATCAGTAACTGGTC TTTAAT TTT GTTAAA TTTGTTTTTTTATTA TERM 924 873202 - 873178 - R 72 -6.3 -4.2558 | overlap 873179 873193 GATCCTTCATCAAAA TGCCAGGAGAG TAA CCCTACTGGCG GCAATGCTAATAGGC TERM 925 873201 - 873179 - R 74 -9.8 -3.15027 | overlap 873178 873193 ATCCTTCATCAAAAT GCCAGGAGAG TAA CCCTACTGGC GGCAATGCTAATAGG YPN_0747 874605 - 873316 - | arsenical pump membrane protein TERM 926 874598 - 874587 - G 70 -2.2 -4.9218 | TAGTCAGGATAAAAA TAGC ACCA GCCA ACAACATAACGCCTC YPN_0748 875031 - 874690 - | DNA-binding transcriptional repressor ArsR TERM 927 875773 - 875794 + r 86 -3.1 -5.69068 | opp_overlap 875777, overlap 875777 AAGCTGTAAAGTCAT TAATTTCAT CTCA ATGAATTTA TTTTTTATCTTTTTA YPN_0749 875958 - 875752 - | hypothetical protein TERM 928 875777 - 875790 + g 78 -3.9 -5.19003 | opp_overlap 875777, overlap 875773 TGTAAAGTCATTAAT TTCAT CTCA ATGAA TTTATTTTTTATCTT YPN_0750 877143 - 876379 - | extracellular solute-binding protein YPN_0751 878593 - 877214 - | cytochrome C peroxidase YPN_0752 879135 - 878830 - | hypothetical protein YPN_0753 879254 - 881350 + | hypothetical protein TERM 929 881583 - 881561 - f 70 -7.7 -3.62255 | opp_overlap 881560, overlap 881557 TTCAAGAAGAACTAA CCGGCCTTT TATCC AAAGGCGGG CTGAATTGGAATTCA YPN_0754 881783 - 882970 + | hypothetical protein TERM 930 883157 - 883125 - f 100 -13.6 -3.08073 | opp_overlap 883134 883136, overlap 883135 AGCAGCGCTAATACA TCTGCAGAATGGAG GATAA CTTCATTCTGCAGA CAACCCCCGATGACG TERM 931 883233 - 883209 - g 76 -7.8 -4.4261 | gap 1, opp_overlap 883211, overlap 883210 883211 GGCCGAAGAGTAAAA CGTCCGCGCCA GAGA TGGCGCGG-CT TGAATGGCATTCAGG TERM 932 883232 - 883210 - g 76 -11.3 -3.25084 | gap 1, opp_overlap 883211, overlap 883209 883211 GCCGAAGAGTAAAAC GTCCGCGCCA GAGA TGGCGCGG-C TTGAATGGCATTCAG TERM 933 883211 - 883232 + G 74 -11.5 -3.07994 | opp_overlap 883210 883209 883211 CCGAAGAGTAAAACG TCCGCGCCA GAGA TGGCGCGGC TTGAATGGCATTCAG TERM 934 883232 - 883211 - g 70 -11.5 -2.54568 | opp_overlap 883211, overlap 883210 883209 CCGAAGAGTAAAACG TCCGCGCCA GAGA TGGCGCGGC TTGAATGGCATTCAG YPN_0755 883133 - 883318 + | acetyltransferase YPN_0756 884113 - 883328 - | methionine aminopeptidase YPN_0757 884361 - 884110 - | hypothetical protein TERM 935 884475 - 884444 - R 100 -10.2 -4.36595 | opp_overlap 884444, overlap 884472 CACTGAAACGGAAAA GGCCTGAGCTCC GTGAATGA AGAACTCAGGCC TTGATAGCCGCTTAA YPN_0758 886187 - 884544 - | fumarate hydratase, class I TERM 936 885820 - 885836 + g 74 -3.6 -5.03715 | overlap 885822 GCATCGTTACCCCCA GTCCAG ACCCG CTGGCC TTTTTTGCCCATGAT TERM 937 886430 - 886453 + r 72 -9.6 -3.09823 | opp_overlap 886426, overlap 886424 GGCTTAAGCGACGGT TCCACCCTCT TTAT AAAGGGTGGA TCTCATTTTCCGCAC YPN_0759 888081 - 886585 - | L-xylulose kinase TERM 938 887331 - 887315 - G 70 -8.7 -3.60151 | TCGTGTAAACCAGAA GTCAGTG CCG CACCGAC CACATCAAACATGCC YPN_0760 888973 - 888092 - | putative L-xylulose 5-phosphate 3-epimerase TERM 939 888926 - 888940 + g 74 -4.2 -4.87807 | TTCGACCCAACTGGT GCCC GCAGGTA GGGC TTTTTCGTATATTCC TERM 940 889169 - 889151 - R 72 -7.4 -4.0641 | opp_overlap 889134 GTTTATCTACATAAA CAGTTAGC TGC GCTCACTG GAATCCCAATCACTT YPN_0761 890216 - 889179 - | sugar ABC transporter, permease protein YPN_0762 891218 - 890229 - | sugar ABC transporter, permease protein YPN_0763 892725 - 891211 - | sugar ABC transporter, ATP-binding protein TERM 941 892328 - 892307 - G 71 -5.8 -4.3586 | GGATCGAGACTAAAA GCCAGTTC ATGCAA GATCTGGC AGGCTTTTTGTTTGA TERM 942 892802 - 892770 - R 100 -11.3 -4.07687 | opp_overlap 892777, overlap 892774 892776 892777 ACCGCGGGTCGAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 943 892798 - 892774 - R 100 -9.9 -4.64861 | opp_overlap 892777, overlap 892770 892776 892777 CGGGTCGAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 944 892796 - 892776 - R 100 -12.5 -3.93868 | opp_overlap 892777, overlap 892774 892770 892777 GGTCGAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 945 892795 - 892777 - R 100 -16 -2.95598 | opp_overlap 892777, overlap 892776 892774 892770 GTCGAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 946 892777 - 892795 + r 100 -16 -4.8048 | opp_overlap 892777 892776 892774 892770 GTCGAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_0764 893334 - 892876 - | transposase for the IS1541 insertion element TERM 947 893447 - 893465 + r 100 -16 -4.37092 | opp_overlap 893447 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 948 893465 - 893447 - R 100 -16 -3.07307 | opp_overlap 893447 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT YPN_0765 894592 - 893585 - | sugar ABC transporter, periplasmic protein YPN_0766 895559 - 894750 - | DeoR family regulatory protein TERM 949 895399 - 895421 + g 100 -4.9 -5.75342 | AGTGCGACAGCGCCG CCAAAACTG CGGAT CAGTTTTTG TTTTTTTTGCAACAC TERM 950 896213 - 896191 - H 83 -11.4 -2.95116 | opp_overlap 896191, overlap 896188 896193 CTATTAGTTAAATGA CATCATTCGA ATA CCGAATGATG TTTTTCATTATCGCC TERM 951 896191 - 896213 + H 100 -10.7 -4.93365 | opp_overlap 896191 896188 896193 CTATTAGTTAAATGA CATCATTCG AATAC CGAATGATG TTTTTCATTATCGCC araD 896262 - 896957 + | L-ribulose-5-phosphate 4-epimerase YPN_0768 897420 - 899870 + | anaerobic dimethyl sulfoxide reductase chain A YPN_0769 899882 - 900499 + | anaerobic dimethyl sulfoxide reductase chain B YPN_0770 900501 - 901361 + | anaerobic dimethyl sulfoxide reductase chain C TERM 952 901386 - 901412 + F 100 -15.3 -3.85092 | GGCGGTGACACTTTG GCTATTCTGGG GAGCG CCCAGAATAGC TTTGCTCTGCCTCAT TERM 953 901600 - 901612 + G 84 -2.6 -5.55769 | GGACTAACGGGGCGA GTGC TAGGT GCGC TTTTTTATTGTGAGC YPN_0771 901507 - 902217 + | twin-argninine leader-binding protein DmsD TERM 954 902440 - 902421 - T 100 -13.6 -4.09685 | TTGCATTCTTTAAAA TGTCCCGC AAAC GCGGGACA AAGAGAAACGGAACA YPN_0772 903004 - 902474 - | cytochrome b561 TERM 955 903032 - 903073 + r 76 -11 -2.56571 | gap 1, overlap 903028 903040 AATATACCCGTCGCC CTTCACGATGCAGG-GGGT TAGCT GCCTACCTGCATCTTGAAG TCACTTGGGTATATA YPN_0773 903535 - 903152 - | cytochrome B562 TERM 956 903569 - 903615 + r 82 -6.9 -4.77122 | gap 2, opp_overlap 903577 903581, overlap 903572 903573 903577 903581 TTATGATTTTCTTCT CTTA-TAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTAGTTAG TTATTTTTTATATCA TERM 957 903572 - 903611 + r 78 -8.8 -3.81144 | gap 1, opp_overlap 903577 903581, overlap 903569 903573 903577 903581 TGATTTTCTTCTCTT ATAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTAG TTAGTTATTTTTTAT TERM 958 903573 - 903610 + r 89 -12.3 -2.86246 | gap 1, opp_overlap 903577 903581, overlap 903572 903569 903577 903581 GATTTTCTTCTCTTA TAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTA GTTAGTTATTTTTTA TERM 959 903577 - 903606 + r 80 -8.7 -4.05045 | gap 1, opp_overlap 903577 903581, overlap 903573 903572 903569 903581 TTCTTCTCTTATAAA TAGAGGGG-GGA AGATAAA TCCTCCCCTCTA TTTAGTTAGTTATTT TERM 960 903606 - 903577 - R 78 -8.7 -3.85698 | gap 1, opp_overlap 903577 903573 903572 903569 903581, overlap 903581 TTCTTCTCTTATAAA TAGAGGGG-GGA AGATAAA TCCTCCCCTCTA TTTAGTTAGTTATTT TERM 961 903581 - 903604 + r 75 -8.8 -3.59634 | opp_overlap 903577 903581, overlap 903577 903573 903572 903569 TCTCTTATAAATAGA GGGGGGAAGA TAAA TCCTCCCCTC TATTTAGTTAGTTAT TERM 962 903604 - 903581 - R 71 -8.8 -3.3353 | opp_overlap 903581 903577 903573 903572 903569, overlap 903577 TCTCTTATAAATAGA GGGGGGAAGA TAAA TCCTCCCCTC TATTTAGTTAGTTAT YPN_0774 905825 - 903612 - | catalase-peroxidase TERM 963 904323 - 904334 + g 76 -4.4 -4.91109 | CTCTGCGGGATCGTT GACT GGCC AGTC TTTTTGTGGTGCCAG TERM 964 907059 - 907048 - g 74 -7.2 -4.2679 | GAAGCCGCATTAAAA GCGG CGGG CCGC AATGATGTGGTGGTG TERM 965 907217 - 907205 - g 79 -9.1 -4.15833 | ATCAGTATCTGAAAA CCGGT AAA ACCGG TCTGGAAGAGAAACA YPN_0775 906361 - 907302 + | sugar ABC transporter, periplasmic protein TERM 966 907359 - 907380 + F 89 -11.5 -3.53761 | opp_overlap 907362, overlap 907360 907362 907374 907375 CCGCTTTAGCCGTAA TGAGGGGCG ACAT CGCCCCTCC TTTCAGGAGGCATTA TERM 967 907360 - 907379 + F 100 -15 -2.72043 | opp_overlap 907362, overlap 907359 907362 907374 907375 CGCTTTAGCCGTAAT GAGGGGCG ACAT CGCCCCTC CTTTCAGGAGGCATT TERM 968 907362 - 907377 + F 86 -11.8 -2.90496 | opp_overlap 907362, overlap 907360 907359 907374 907375 CTTTAGCCGTAATGA GGGGCG ACAT CGCCCC TCCTTTCAGGAGGCA TERM 969 907377 - 907362 - f 83 -11.8 -2.72344 | opp_overlap 907362 907360 907359 907374 907375 CTTTAGCCGTAATGA GGGGCG ACAT CGCCCC TCCTTTCAGGAGGCA YPN_0776 907395 - 908012 + | putative lipoprotein TERM 970 909075 - 909059 - g 91 -7.9 -5.09173 | opp_overlap 909059 GAAGATCGTAAAAAA GCCGGGA TTT TCCCTGC TTCATCGGTCGCCTG YPN_0777 908012 - 909535 + | sugar ABC transporter, ATP-binding protein YPN_0778 909532 - 910677 + | sugar ABC transporter, permease protein TERM 971 911291 - 911265 - g 72 -3.7 -4.89567 | gap 1, opp_overlap 911286, overlap 911260 911266 911267 CTGTAAAACACAAAA CGCCAGGCATTG AACT CAATACCGGG-G CTTTAGGGCACGGTT TERM 972 911489 - 911477 - g 76 -4.8 -5.00267 | AACGACAAAAATAAA CTGC AACTG GCAG GGACCACTAAATCAA YPN_0779 910928 - 911758 + | transketolase subunit YPN_0780 911751 - 912695 + | transketolase subunit TERM 973 913009 - 912969 - g 80 -10.5 -3.66178 | gap 2, opp_overlap 912970, overlap 912970 TTTGGGAACGGGAAA CCGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCGT CGTTCAGAGGCTTTC TERM 974 913008 - 912970 - g 82 -14 -2.79492 | gap 2, opp_overlap 912970, overlap 912969 TTGGGAACGGGAAAC CGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCG TCGTTCAGAGGCTTT TERM 975 912970 - 913008 + G 74 -11.8 -2.7186 | gap 2, opp_overlap 912970 912969 TTGGGAACGGGAAAC CGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCG TCGTTCAGAGGCTTT TERM 976 914158 - 914169 + G 71 -7.2 -4.07885 | CTGGCAAACGGCCAT CGCG CGTG CGCG TTTTCAGCCGAAATA YPN_0781 912698 - 914185 + | glycerol kinase TERM 977 914393 - 914379 - g 74 -8.6 -4.08767 | GGGAGGTGTGGAAAA TTGGCA TGA TGCCAA GGTGTGCGCTGAATT YPN_0782 914206 - 915630 + | hypothetical protein YPN_0783 915835 - 915584 - | hypothetical protein TERM 978 915810 - 915825 + g 71 -10.4 -3.0395 | opp_overlap 915805 AAGAGTAAAGTGTCC GCCCCA TGGC TGGGGC TGTTAACCAATATGT YPN_0784 916796 - 915852 - | transcriptional regulatory protein YPN_0785 918384 - 917044 - | membrane protein TERM 979 917929 - 917910 - G 70 -9.3 -3.59233 | overlap 917906 TAACCATTAAAGTAA TCAGCCC CAGCGC GGGCTGA AACATAAGCACCACC TERM 980 918486 - 918502 + H 100 -10.9 -4.41548 | opp_overlap 918499 ATCATGATTTTTTAT CCCCTTT TAA AAAGGGG TTTTCTCCCCTCTCA TERM 981 918512 - 918499 - H 70 -5.2 -4.56775 | opp_overlap 918486 ATCCCCTTTTAAAAA GGGG TTTTCT CCCC TCTCACCGCTATTCG TERM 982 918768 - 918758 - g 71 -6.8 -4.27465 | CATAAGTTAAAAGAA CACG GTG CGTG GGTGACCTGTGCAGA YPN_0786 918701 - 919189 + | competence damage-inducible protein A TERM 983 920260 - 920242 - g 78 -3.8 -5.10933 | opp_overlap 920243, overlap 920244 CTATTTAAAAGAAAA CCCAGC CATTGCT GCTGAG TTAGATAAAAAACTG recA 919304 - 920374 + | recombinase A TERM 984 920402 - 920433 + F 100 -18.2 -3.6682 | opp_overlap 920402 920406, overlap 920406 ACCAGTTGGAGTAAA CAAACAGACCGTCA CTTG TGGCGGTCTGTTTG TTTGAGTAAATAACA TERM 985 920433 - 920402 - f 100 -16 -3.73953 | opp_overlap 920402 920406, overlap 920406 ACCAGTTGGAGTAAA CAAACAGACCGTCA CTTG TGGCGGTCTGTTTG TTTGAGTAAATAACA TERM 986 920406 - 920429 + F 100 -13.2 -4.46514 | opp_overlap 920406 920402, overlap 920402 GTTGGAGTAAACAAA CAGACCGTCA CTTG TGGCGGTCTG TTTGTTTGAGTAAAT TERM 987 920429 - 920406 - f 100 -11 -4.49556 | opp_overlap 920402 920406, overlap 920402 GTTGGAGTAAACAAA CAGACCGTCA CTTG TGGCGGTCTG TTTGTTTGAGTAAAT recX 920512 - 921075 + | recombination regulator RecX TERM 988 923145 - 923132 - g 78 -2.3 -5.27335 | opp_overlap 923133, overlap 923133 GCGGCGAAAGAAAAA GGTGC AATG GCACT GTTCGGCGAGAAGTA alaS 921215 - 923842 + | alanyl-tRNA synthetase TERM 989 923891 - 923865 - f 74 -9.4 -3.35849 | opp_overlap 923865, overlap 923863 TCTATTAAATCAACA CGCCATATCTCG GTA CTAGGTATGGCG TTTTTTAATTTTCCT TERM 990 923865 - 923891 + F 100 -11.6 -5.48054 | opp_overlap 923865 923863 TCTATTAAATCAACA CGCCATATCTCG GTA CTAGGTATGGCG TTTTTTAATTTTCCT YPN_0790 924092 - 924277 + | carbon storage regulator TERM 991 924282 - 924316 + F 100 -15 -5.27206 | opp_overlap 924288, overlap 924285 CGACTTACTGATTTT GAAGCAGCGTCTCGTG TAA CACGAGGCGCTACTGC TTTTTATTGTCTCTA TERM 992 924285 - 924313 + F 100 -15.3 -3.43245 | opp_overlap 924288, overlap 924282 CTTACTGATTTTGAA GCAGCGTCTCGTG TAA CACGAGGCGCTAC TGCTTTTTATTGTCT TERM 993 924310 - 924288 - f 93 -13.4 -2.72463 | opp_overlap 924285 924282 ACTGATTTTGAAGCA GCGTCTCGTG TAA CACGAGGCGC TACTGCTTTTTATTG TERM 994 925118 - 925133 + F 91 -8.2 -4.67635 | opp_overlap 925118, overlap 925128 CACCATATTAAGGAA CCTCGC TATA GCGGGG TTTTCTGCTTTTGGC TERM 995 925233 - 925218 - f 73 -9 -3.52102 | overlap 925232 AGCGTAGCGAGACAA CGTTGC TTTA GCAACG GCCCGTAGGGCGAGG TERM 996 925290 - 925305 + F 91 -8.2 -4.67635 | opp_overlap 925290, overlap 925300 CACCATATTAAGGAA CCTCGC TATA GCGGGG TTTTCTGCTTTTGGC YPN_0791 925530 - 926096 + | fructose-1-phosphatase YPN_0792 926093 - 926521 + | hypothetical protein YPN_0793 926565 - 928163 + | glutamate--cysteine ligase TERM 997 928190 - 928173 - f 100 -11.3 -5.55001 | CAATAAAAAAGAAAA GGCCACA TCAC TGTGGCC AAATTAACATCTCTA TERM 998 928257 - 928229 - f 100 -10.4 -4.36554 | GATGATGATAACAAA TGCGCGTCTT TCACATATT AAGACGCGCA GGATGAGTAAAAGTT YPN_0794 928330 - 928845 + | S-ribosylhomocysteinase TERM 999 928879 - 928896 + F 87 -4.8 -5.55769 | opp_overlap 928874 928879 928881 AGGAGAATGATAAAA GGCGCT GATTAA AGCGTC TTTTTTATTGTGCCC TERM 1000 928918 - 928936 + F 100 -16 -3.07307 | opp_overlap 928918 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1001 928936 - 928918 - f 100 -16 -4.37092 | opp_overlap 928918 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0795 928998 - 929177 + | hypothetical protein TERM 1002 929182 - 929200 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_0796 929204 - 930226 + | transposase for insertion sequence IS100 TERM 1003 930307 - 930293 - g 77 -11.4 -3.3506 | overlap 930284 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_0797 930226 - 931005 + | transposase/IS protein YPN_0798 931021 - 931467 + | transposase TERM 1004 931545 - 931569 + T 100 -9.9 -4.44046 | opp_overlap 931548, overlap 931547 931548 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTAAACTGAC TERM 1005 931547 - 931567 + T 100 -12.5 -3.82628 | opp_overlap 931548, overlap 931545 931548 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTAAACTG TERM 1006 931566 - 931548 - T 100 -16 -4.8048 | opp_overlap 931547 931545 931548 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTAAACT TERM 1007 931548 - 931566 + T 100 -16 -2.88854 | opp_overlap 931548, overlap 931547 931545 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTAAACT YPN_0799 932795 - 931605 - | hypothetical protein YPN_0800 933850 - 932957 - | hypothetical protein TERM 1008 934374 - 934362 - g 70 -9.1 -3.62518 | opp_overlap 934362 TCAAACAGTTGGAAA CCCTG GCT CAGGG TGTTGGCATTGATTT TERM 1009 934984 - 934974 - g 71 -6.8 -4.26076 | opp_overlap 934976 GTATGTTGAGTAAAA TGCC AGG GGCA GGTCAGTTGCCAGAA YPN_0801 933914 - 935275 + | signal recognition particle protein YPN_0802 935448 - 935284 - | hypothetical protein TERM 1010 935382 - 935402 + g 70 -2.6 -5.00884 | opp_overlap 935382 CAAAATGTGCGAACA GGAATCTA CGCTT TAGATTGC TTTTTTCGCCAAAAT TERM 1011 935446 - 935479 + g 100 -18.3 -4.67982 | GGGCTTTTTATATTG CAACTGGACCCCGTT CCCC GATGGGGTCCAGTTG TTTTATTAACTAAAG rpsP 935503 - 935751 + | 30S ribosomal protein S16 rimM 935773 - 936321 + | 16S rRNA-processing protein trmD 936360 - 937100 + | tRNA (guanine-N(1)-)-methyltransferase rplS 937181 - 937528 + | 50S ribosomal protein L19 TERM 1012 937590 - 937570 - f 86 -12.6 -2.52987 | opp_overlap 937570, overlap 937569 TTAATACTTATGAAG GGGCTAGC CATGT GCTAGCCC TTTTTTGTGCCCAGA TERM 1013 937570 - 937590 + F 100 -12.6 -5.24129 | opp_overlap 937570 937569 TTAATACTTATGAAG GGGCTAGC CATGT GCTAGCCC TTTTTTGTGCCCAGA TERM 1014 937627 - 937609 - f 100 -16 -4.36914 | opp_overlap 937609 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1015 937609 - 937627 + F 100 -16 -3.07307 | opp_overlap 937609 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0807 937740 - 938198 + | transposase for the IS1541 insertion element TERM 1016 938262 - 938315 + T 100 -13.3 -5.63103 | gap 1, opp_overlap 938256 938279, overlap 938265 938279 GGTAACAGAGCCTTA TAG-GCGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTGTGCTCTA TTTTTTTAGTTGGCA TERM 1017 938265 - 938311 + T 100 -15.2 -3.80651 | opp_overlap 938256 938279, overlap 938262 938279 AACAGAGCCTTATAG GCGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTGTGC TCTATTTTTTTAGTT TERM 1018 938297 - 938279 - T 100 -16 -4.8048 | opp_overlap 938265 938262 938279 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGCT TERM 1019 938279 - 938297 + T 100 -16 -2.93101 | opp_overlap 938279, overlap 938265 938262 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGCT TERM 1020 938483 - 938461 - T 74 -10.6 -2.69545 | opp_overlap 938463, overlap 938460 938463 GGCAGAGAGGAGAAT TAGCGCGGTA TCA CACCACGCTA TATAGACGAATGGTG YPN_0808 939268 - 938501 - | hypothetical protein YPN_0809 939887 - 939591 - | Dcu family anaerobic C4-dicarboxylate transporter YPN_0810 940186 - 939875 - | Dcu family anaerobic C4-dicarboxylate transporter YPN_0811 940935 - 940255 - | hypothetical protein YPN_0812 942080 - 941364 - | putative two-component response-regulatory protein YehT TERM 1021 942400 - 942387 - g 76 -5.3 -4.8143 | opp_overlap 942379, overlap 942379 942391 GGAAGAACTGAAAAA TCAGT TTCC ACTGA GCGAAAATGATCAGT YPN_0813 942307 - 943383 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1022 944368 - 944382 + G 74 -10 -3.61517 | TACTACAAACGCTTT GGTGAG GCG CTCACC TTGTTAGAGCACCAT tyrA 943396 - 944517 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 1023 944548 - 944576 + T 100 -13.2 -5.69473 | GATAGATTTTTATAG GTCATCCCAGCA CAGCC TGCCGGGATGAC TTTTTTTATGGTGTG pheA 945779 - 944622 - | bifunctional chorismate mutase/prephenate dehydratase TERM 1024 945892 - 945909 + H 100 -12.7 -4.51812 | opp_overlap 945892 ATATACATAAAAAAA GCCTCCC GCTT GGGAGGC TTTCTTGTTGTGCCC TERM 1025 945909 - 945892 - H 100 -12.7 -5.77988 | opp_overlap 945892 ATATACATAAAAAAA GCCTCCC GCTT GGGAGGC TTTCTTGTTGTGCCC TERM 1026 945931 - 945949 + H 100 -16 -3.07307 | opp_overlap 945931 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1027 945949 - 945931 - H 100 -16 -4.36914 | opp_overlap 945931 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0816 946062 - 946520 + | transposase for the IS1541 insertion element TERM 1028 946598 - 946622 + T 93 -9.9 -4.33153 | opp_overlap 946601, overlap 946600 946601 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCGTCTTCGC TERM 1029 946600 - 946620 + T 100 -12.5 -3.76167 | opp_overlap 946601, overlap 946598 946601 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCGTCTTC TERM 1030 946619 - 946601 - T 100 -16 -4.8048 | opp_overlap 946601 946600 946598 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCGTCTT TERM 1031 946601 - 946619 + T 100 -16 -2.84616 | opp_overlap 946601, overlap 946600 946598 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCGTCTT TERM 1032 946822 - 946807 - T 100 -11.8 -4.87291 | GATGTCAATTAAAAA CGCGCC CGAA GGCGCG TTACACCGAAATTAG YPN_0817 947213 - 946851 - | sigma 54 modulation protein TERM 1033 947517 - 947546 + r 74 -4.9 -4.77757 | opp_overlap 947523, overlap 947519 947523 GTTGAAAACCTAAAT TGAAAACGGCAGC CTGA GCTGCCGTTGGTG TTTTCATTTTTCGGG TERM 1034 947519 - 947544 + r 72 -7.5 -3.99386 | opp_overlap 947523, overlap 947517 947523 TGAAAACCTAAATTG AAAACGGCAGC CTGA GCTGCCGTTGG TGTTTTCATTTTTCG TERM 1035 947540 - 947523 - R 100 -12.7 -4.37198 | opp_overlap 947519 947517 947523 AACCTAAATTGAAAA CGGCAGC CTGA GCTGCCG TTGGTGTTTTCATTT TERM 1036 947523 - 947540 + r 100 -12.7 -3.58476 | opp_overlap 947523, overlap 947519 947517 AACCTAAATTGAAAA CGGCAGC CTGA GCTGCCG TTGGTGTTTTCATTT YPN_0818 948299 - 947568 - | outer membrane protein assembly complex subunit YfiO TERM 1037 948400 - 948390 - H 75 -8.2 -3.8766 | GCACATTATATTAAA CGGC ATC GCCG TCAAAACCCAACGTT rluD 948435 - 949412 + | 23S rRNA pseudouridine synthase D TERM 1038 949450 - 949463 + G 70 -9.5 -3.29144 | GATTGGCCGATGCCT GCCCG CGTC CGGGC TTGTAGCACCACTCG TERM 1039 949851 - 949826 - g 71 -10.4 -3.06696 | opp_overlap 949823 949826 GTGTTCTGGAACACA CGGTGGCGCA ATTCAA TGCGGCACCG TCCTCTCTTATGGCT YPN_0820 949414 - 950145 + | hypothetical protein TERM 1040 951581 - 951568 - g 80 -2.3 -5.41143 | CAGGCCCTAAAAAAA GAGTC AGAT GACGC CAGTAAAAAACGGTT YPN_0821 950275 - 952848 + | protein disaggregation chaperone TERM 1041 952864 - 952881 + T 100 -12.7 -5.80727 | TAGCTGATCCTCTAA GGGGCGA GAAA TCGCCCC TTTTTTGTTGTTTTT TERM 1042 956724 - 956706 - T 82 -10.3 -3.57798 | overlap 956719 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 1043 957184 - 957158 - T 70 -9.4 -2.75844 | opp_overlap 957172 957180, overlap 957157 957160 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 1044 957231 - 957220 - T 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 1045 958343 - 958353 + T 74 -6.8 -4.27316 | opp_overlap 958343 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 1046 958608 - 958574 - T 95 -9.2 -4.50627 | opp_overlap 958581 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGCGCGAAACACA TERM 1047 958581 - 958601 + T 100 -10.4 -4.8048 | opp_overlap 958574 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 1048 958647 - 958667 + T 100 -10.4 -4.8048 | opp_overlap 958644 GCGTTGTAATGATGA CCCCATGC CAAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 1049 958713 - 958733 + T 100 -10.4 -4.8048 | opp_overlap 958713 ACGTTGTATTGATAA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 1050 958733 - 958713 - T 71 -8.9 -3.35798 | opp_overlap 958713 ACGTTGTATTGATAA CCCCATGCC CAA AGCGTGGGG TTTTTGCTGTGCGCG TERM 1051 958779 - 958799 + T 72 -6.1 -4.34402 | GCGTTGTAATGATGA CCCCATG CCAAAAA CGTGGGG TTTTGCTGTGCGCGA YPN_0822 959292 - 958951 - | hypothetical protein TERM 1052 959322 - 959338 + r 70 -3.6 -4.78848 | opp_overlap 959322, overlap 959314 AGTGGGAGATGAAAA CCCGCT AATTC ACCGGG TTTTATCTTTAAGAC pssA 960709 - 959354 - | phosphatidylserine synthase YPN_0824 963527 - 960885 - | acetyltransferase YPN_0825 964319 - 963570 - | hypothetical protein TERM 1053 964364 - 964337 - R 75 -8.6 -3.86897 | gap 1, opp_overlap 964361 964362, overlap 964339 964359 CGGACTCCTGAGAAA TAGCGCCATTCTA ATA TAGAATGGC-CCA CGCCCCGACAGAAAA TERM 1054 964363 - 964339 - R 89 -11.5 -3.5241 | opp_overlap 964361 964362, overlap 964337 964359 GACTCCTGAGAAATA GCGCCATTCTA ATA TAGAATGGCCC ACGCCCCGACAGAAA YPN_0826 964926 - 964489 - | thioredoxin 2 TERM 1055 965150 - 965162 + H 77 -10.5 -3.14132 | opp_overlap 965146 ACATCAGGTAATCTT CGCGC CCT GCGCG TTGGTGGAGAAGACA YPN_0827 965178 - 966344 + | putative methyltransferase TERM 1056 966379 - 966435 + T 100 -13.8 -3.40775 | opp_overlap 966370 966380 966389 966394, overlap 966380 966394 GAGAGACGTTTTAGA ACGGTAAAAATAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTTTGTTGACCGC TATTTGGCTAAAAAT TERM 1057 966434 - 966380 - T 100 -17.3 -3.3095 | opp_overlap 966379 966380 966394, overlap 966370 966389 966394 AGAGACGTTTTAGAA CGGTAAAAATAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTTTGTTGACCG CTATTTGGCTAAAAA TERM 1058 966380 - 966434 + T 100 -17.3 -2.64144 | opp_overlap 966370 966380 966389 966394, overlap 966379 966394 AGAGACGTTTTAGAA CGGTAAAAATAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTTTGTTGACCG CTATTTGGCTAAAAA TERM 1059 966425 - 966389 - T 100 -13.8 -4.6902 | opp_overlap 966380 966379 966394, overlap 966380 966394 TTAGAACGGTAAAAA TAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTT TGTTGACCGCTATTT TERM 1060 966420 - 966394 - T 100 -13.7 -5.27023 | opp_overlap 966380 966379 966394, overlap 966389 966380 ACGGTAAAAATAAAA GGGGGCGCTGA TGAGT TCAGGGCCCCC TTTTTTGTTGACCGC TERM 1061 966394 - 966420 + T 100 -13.7 -5.4505 | opp_overlap 966394 966389 966380, overlap 966380 966379 ACGGTAAAAATAAAA GGGGGCGCTGA TGAGT TCAGGGCCCCC TTTTTTGTTGACCGC YPN_0828 968002 - 966467 - | multidrug resistance protein B YPN_0829 969213 - 968041 - | multidrug resistance protein A TERM 1062 969142 - 969162 + g 84 -2.6 -5.55769 | gap 1 GGCCGTCAGCAACAG CAGTACACG TTTA CGT-TGCTG TTTTTTATTCTGCGG YPN_0830 970109 - 969597 - | transcriptional repressor MprA YPN_0831 970622 - 970281 - | hypothetical protein YPN_0832 971392 - 970619 - | amino acid transporter YPN_0833 972751 - 971552 - | sugar transporter TERM 1063 972240 - 972211 - G 86 -15.1 -2.91695 | overlap 972208 972233 972234 GGCAGCGCCAAAGGA CCAGTGCCATGAT AAAC ATCAAGGCACTGG CAACCCAATAAATGG TERM 1064 972844 - 972860 + r 78 -9.3 -3.59979 | GAGGCATTTTCGAGC GAGGGCC AAA GGCCCCC TTTGGAATGACAACC YPN_0834 973446 - 972979 - | hypothetical protein YPN_0835 974872 - 973475 - | amidase YPN_0836 975072 - 974869 - | hypothetical protein YPN_0837 975041 - 975199 + | hypothetical protein TERM 1065 976164 - 976147 - g 73 -9.1 -3.80877 | overlap 976145 TTACTGCATAAAATA CTGGCAG AAGG CCGCCAG CGGATACATCAAATT YPN_0838 975382 - 976215 + | transcriptional regulator YPN_0839 976543 - 977331 + | amino acid ABC transporter, periplasmic protein YPN_0840 977344 - 978012 + | amino acid ABC transporter, permease protein YPN_0841 978009 - 978662 + | amino acid ABC transporter, permease protein YPN_0842 978643 - 979389 + | amino acid ABC transporter, ATP-binding protein YPN_0843 979421 - 980764 + | hypothetical protein TERM 1066 981260 - 981242 - g 71 -11 -2.84504 | overlap 981239 981237 AGTGGTTAAATACGA CCGATGCC GAT GGCATCAG TGTCGCGCAAGCGAT YPN_0844 980764 - 982047 + | allantoate amidohydrolase TERM 1067 982133 - 982143 + F 100 -8.2 -4.8622 | overlap 982132 AACGCCAATGACGTC GGGG ATC CCCC TTTTTACTTGACGCC TERM 1068 982235 - 982220 - f 73 -9 -3.41359 | overlap 982218 GCCTCAAAATTAATA GCCTCA TCCC TGAGGC TCAGACTGCTGACAA TERM 1069 982324 - 982298 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 982307, overlap 982299 982314 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1070 982325 - 982299 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 982307, overlap 982298 982314 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1071 982423 - 982398 - f 93 -11.9 -3.62046 | overlap 982399 GCACTTTGTCAATAA CCTGAGCCTCA TCCC TGAGGCTCAGC CTACGAGCTAGCATA TERM 1072 982422 - 982399 - f 100 -15.4 -2.77013 | overlap 982398 CACTTTGTCAATAAC CTGAGCCTCA TCCC TGAGGCTCAG CCTACGAGCTAGCAT TERM 1073 982915 - 982951 + F 82 -2.4 -5.66989 | gap 1, overlap 982912 TCAAATTGCTGTTTG CCGTAAACCTGTGAC GGCAATTA GTC-TAAGTTTACGG TTTTTTTAGTGTTTA YPN_0845 983136 - 984926 + | surface-exposed protein YPN_0846 984967 - 986127 + | adhesin system component TERM 1074 986616 - 986605 - g 76 -7.2 -4.33274 | overlap 986589 986607 CCGATATCACTAAAA CGGC GGGA GCCG ATGCGACGCTGACAT YPN_0847 986127 - 990701 + | adhesin TERM 1075 991251 - 991236 - g 70 -9 -3.62478 | TAATGAAGCCGGAAA TGGGTG CTCG CACCCA TTGCGATTCGAGCGA YPN_0848 990856 - 992709 + | accessory processing protein TERM 1076 992779 - 992798 + G 71 -7.9 -4.08216 | ACTTCATCGCTTGGT TGCCGAT ATCCCG ATCGGCA TTTTACAGCACATCA TERM 1077 992959 - 992975 + G 72 -10.1 -3.44284 | overlap 992957 ACAGCGATTACTCGG GGCGCAG GGT TTGCGCC TGTTGTTGATGGGGC YPN_0849 992711 - 993457 + | hypothetical protein TERM 1078 993589 - 993564 - T 100 -9 -4.82128 | opp_overlap 993560 993564 TTATTAAACATAAAA CTAAGCCTCC TTAATG GGAGGCTTGG TTGATTATTTCGATA TERM 1079 993564 - 993589 + T 93 -11.9 -3.62723 | opp_overlap 993564, overlap 993560 TTATTAAACATAAAA CTAAGCCTCCT TAAT GGGAGGCTTGG TTGATTATTTCGATA fadE 996076 - 993629 - | acyl-CoA dehydrogenase gmhA 996316 - 996897 + | phosphoheptose isomerase TERM 1080 997827 - 997806 - g 75 -8.7 -3.91084 | opp_overlap 997806 TGACCGGTAATGAAA CCTGGCACA AAAT TGCACCAGG TGAATTTGCTTTATT YPN_0852 997100 - 997873 + | hypothetical protein YPN_0853 998500 - 997838 - | hypothetical protein YPN_0854 998980 - 998801 - | hypothetical protein TERM 1081 998858 - 998842 - G 74 -6.5 -4.28049 | opp_overlap 998851 CGGAAAATGCTAAAA TCACCCG CAG CTGGTGA CCTGCTTGTGTAATG YPN_0855 999043 - 1000425 + | Na(+)-translocating NADH-quinone reductase subunit A YPN_0856 1000429 - 1001670 + | Na(+)-translocating NADH-quinone reductase subunit B YPN_0857 1001660 - 1002460 + | Na(+)-translocating NADH-quinone reductase subunit C TERM 1082 1002590 - 1002611 + G 79 -8.7 -4.27796 | overlap 1002591 ATTAGTGATGACTCT GGCAGTCAC GCTG GTGACTGCG TTTTCGAGTTTCTTC TERM 1083 1002591 - 1002610 + G 77 -12.2 -3.15593 | overlap 1002590 TTAGTGATGACTCTG GCAGTCAC GCTG GTGACTGC GTTTTCGAGTTTCTT YPN_0858 1002453 - 1003082 + | Na(+)-translocating NADH-quinone reductase subunit D YPN_0859 1003089 - 1003685 + | Na(+)-translocating NADH-quinone reductase subunit E YPN_0860 1003701 - 1004924 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 1084 1005625 - 1005607 - g 74 -4.4 -4.79683 | overlap 1005609 AATGGAGAAAATAAA CCTTGGCG TAT CGCCATTG AAAAGCCAGTCGCGG YPN_0861 1004908 - 1005987 + | thiamine biosynthesis lipoprotein YPN_0862 1006000 - 1006227 + | hypothetical protein TERM 1085 1006395 - 1006355 - T 100 -19.1 -3.32844 | opp_overlap 1006356 1006360, overlap 1006356 1006360 TTTTTTATCTGACAA GCAAAGCCCCCGAACGACG CAT CATTGTTCGGGGGCTTTGT TGCTCAATTATTGTC TERM 1086 1006356 - 1006394 + T 100 -22.6 -3.2557 | opp_overlap 1006356 1006355 1006360, overlap 1006360 TTTTTATCTGACAAG CAAAGCCCCCGAACGACG CAT CATTGTTCGGGGGCTTTG TTGCTCAATTATTGT TERM 1087 1006394 - 1006356 - T 100 -22.6 -2.59564 | opp_overlap 1006356 1006360, overlap 1006355 1006360 TTTTTATCTGACAAG CAAAGCCCCCGAACGACG CAT CATTGTTCGGGGGCTTTG TTGCTCAATTATTGT TERM 1088 1006390 - 1006360 - T 100 -17.6 -4.00124 | opp_overlap 1006356 1006360, overlap 1006356 1006355 TATCTGACAAGCAAA GCCCCCGAACGACG CAT CATTGTTCGGGGGC TTTGTTGCTCAATTA TERM 1089 1006360 - 1006390 + T 100 -17.6 -4.26871 | opp_overlap 1006360 1006356 1006355, overlap 1006356 TATCTGACAAGCAAA GCCCCCGAACGACG CAT CATTGTTCGGGGGC TTTGTTGCTCAATTA YPN_0863 1007418 - 1006471 - | hypothetical protein TERM 1090 1006672 - 1006686 + g 74 -4.2 -4.8543 | overlap 1006670 1006674 TGCGCTAGAACGCCC TTCACC CAA GGTGTA TTTTTCTACAACTTC YPN_0864 1007774 - 1008832 + | DNA polymerase IV YPN_0865 1010406 - 1008946 - | aminoacyl-histidine dipeptidase TERM 1091 1009068 - 1009089 + g 70 -2.2 -5.00616 | overlap 1009062 TTGGCCCAATCGACA CCATGTCC ATGTTA GGATAGGG TTTTTTGAACAAACC TERM 1092 1011089 - 1011103 + H 82 -2.1 -5.72053 | gap 1 AATGAGGTTTTTACT TGAGGC TGTA GCC-CA TTTTTTATTTAATTC TERM 1093 1011970 - 1011980 + H 70 -2.6 -4.9725 | opp_overlap 1011970 CGGAAAAATAAGAAT TAAA TCC TTTA TTTTTGTGTCGGCAT TERM 1094 1013123 - 1013113 - g 78 -4 -5.13016 | opp_overlap 1013107 1013113, overlap 1013107 AATTAAAAGTAAAAA GTAA CGC TTAC TATTTATGTGATAAT YPN_0866 1012281 - 1013192 + | LysR family transcriptional regulator TERM 1095 1013638 - 1013616 - T 100 -13.6 -5.26875 | opp_overlap 1013637 TTCTGAATTAAAAAA CGGGTATTAT AGA ATAATACCCG CTGATAGAGACGATT YPN_0867 1015256 - 1013652 - | carbohydrate-binding protein TERM 1096 1015241 - 1015255 + g 78 -5.8 -4.88258 | overlap 1015222 GATGTAGTTGTGCAT TGAAAT GTA ATTTCA TTTTATTATCCTTTT TERM 1097 1015352 - 1015362 + H 77 -4.6 -4.9218 | TGCGCATCCCTCCCG CCCG GAA TGGG TTTTTATAATCACTA YPN_0868 1016185 - 1016643 + | xanthine-guanine phosphoribosyltransferase TERM 1098 1016655 - 1016684 + F 100 -9.3 -4.69326 | overlap 1016660 ATAATTTACTGTTCT TTAAGCGTCCGGT GCCT GCCGGACGTTTCA TTTTCTCTTCAGTAT TERM 1099 1016660 - 1016679 + F 100 -11.4 -4.32571 | overlap 1016655 TTACTGTTCTTTAAG CGTCCGGT GCCT GCCGGACG TTTCATTTTCTCTTC frsA 1016770 - 1018017 + | fermentation/respiration switch protein YPN_0870 1018077 - 1018478 + | DNA-binding transcriptional regulator Crl TERM 1100 1018534 - 1018564 + F 78 -9.1 -3.83205 | CATAAACTGTCCCCA TTACCCCCTTTCT GCACA ATAAAGGGGGTGA TTTCGTATCAAGCCT YPN_0871 1018655 - 1019758 + | gamma-glutamyl kinase TERM 1101 1020846 - 1020863 + G 74 -7.7 -4.1891 | AGTATTTTGTCCGCG CTGTCGA TTCA TCGGCAG TTTATGTTAACGCGA proA 1019768 - 1021027 + | gamma-glutamyl phosphate reductase TERM 1102 1021114 - 1021100 - f 78 -5.7 -4.7497 | opp_overlap 1021111, overlap 1021111 CTGATTGATTAAAAA TCGCT AGTAA AGCGA CATGTGGCAATTTGC TERM 1103 1021111 - 1021138 + F 100 -13.6 -5.78622 | gap 1, opp_overlap 1021100 1021111 AAAATCGCTAGTAAA GCGACATGTGGCA ATT TGCCA-ATGTCGC TTTTTTTTCAAATCA TERM 1104 1021138 - 1021111 - f 100 -13.6 -3.75863 | gap 1, opp_overlap 1021111, overlap 1021100 AAAATCGCTAGTAAA GCGACATGTGGCA ATT TGCCA-ATGTCGC TTTTTTTTCAAATCA TERM 1105 1021525 - 1021559 + G 71 -5.8 -4.29325 | overlap 1021527 TGAGACTAATCAGTT TATTTTCGATTTCGGC AGT GTAGAAAACGAAAATG TTTTGGCTCTTGGTG YPN_0873 1021364 - 1022113 + | hypothetical protein YPN_0874 1022296 - 1022565 + | hypothetical protein YPN_0875 1022543 - 1022746 + | hypothetical protein TERM 1106 1022849 - 1022835 - gf 83 -2.8 -5.39721 | GCAGCAGATAAAAAA CTCACT AAT ATTGAG ATACAACAAGGGCTG YPN_0876 1022694 - 1023332 + | hypothetical protein YPN_0877 1024062 - 1024619 + | putative methyltransferase TERM 1107 1024791 - 1024811 + F 75 -3.2 -5.21709 | opp_overlap 1024782 AGTAAACCTGTTCAA CCGGCC AATAATAAC GGTCGG TTTTTTGATGTCGAA aroL 1024866 - 1025390 + | shikimate kinase II YPN_0879 1025880 - 1026167 + | hypothetical protein TERM 1108 1026191 - 1026221 + T 86 -11.9 -2.91086 | overlap 1026185 1026186 TTGAGTTAGCGAGTC TGTCACCCTCTCT ATGCC AGAGGGGGCGACA TATCATCTATCCTTT rdgC 1027314 - 1026403 - | recombination associated protein TERM 1109 1027329 - 1027353 + H 84 -11.3 -3.14132 | TAGTGTTATCCTTGG CTCGGGCGCGC CTG GAGCGCGCGAG TTAATCAACGCAGGG TERM 1110 1027580 - 1027598 + H 88 -9.6 -4.25104 | TATCCAGATCACAGT TATCCTGC CTA GCAGGGTA TTTTGATCGCGAGAA YPN_0881 1027647 - 1028561 + | fructokinase YPN_0882 1032852 - 1029163 - | hypothetical protein TERM 1111 1031626 - 1031655 + g 82 -6.5 -4.81083 | overlap 1031617 1031649 GGCATAGTCTGCTAG CTGTTGCAGGC GTTGATGG GTCTGCAATAG TTTTTGCTCATTCAG TERM 1112 1032477 - 1032493 + g 71 -6.5 -4.13767 | TATCGCGGACCTTAT CGGCCAA GAT TTTGCCG TTTTCGCATAAGGCC YPN_0883 1034093 - 1032849 - | exonuclease subunit SbcD YPN_0884 1034361 - 1035050 + | phosphate regulon transcriptional regulatory protein TERM 1113 1035101 - 1035118 + G 71 -5.5 -4.45696 | CTTATCATGGAAAAC GCTGGCT TTAG AGCTGGC TCTTTTTTGTTTGCC TERM 1114 1035403 - 1035420 + G 76 -11.3 -3.25304 | overlap 1035391 1035390 1035409 AGTCACTGCCTGATG CCGTGGT TATC ACCACGG TTGATGGTAATATTT TERM 1115 1036311 - 1036321 + G 78 -2.4 -5.29885 | ATGAGTGAAATTGGT CTGG GTA CCCG TTTTATTTTTACCTT phoR 1035075 - 1036391 + | phosphate regulon sensor protein TERM 1116 1037235 - 1037217 - g 79 -11 -3.54307 | AACAGTGGTGTTAAA TCACTGCC GTT GGCAGCGA GTGGGCAAGATTTTG YPN_0886 1036413 - 1037477 + | phosphate binding protein YPN_0887 1037951 - 1039270 + | branched-chain amino acid transport system II carrier protein TERM 1117 1039295 - 1039315 + F 100 -11.1 -4.72272 | overlap 1039309 AATAGAGTATTTTTA GCCACGGTT AAT ATCCGTGGC TTTTTGCTGAAAAAA TERM 1118 1040145 - 1040162 + G 77 -11.3 -3.36492 | opp_overlap 1040138, overlap 1040145 GGAATCAAGTGGGCA CGAACGG TAGT CCGTTCG TTCTGACCTTCCAGC YPN_0888 1039346 - 1040737 + | putative proline-specific permease TERM 1119 1040779 - 1040805 + F 100 -6.5 -5.85244 | opp_overlap 1040779 GATAATCGATACAAA GCCGGGGTACA GTTCA TCTGTCCCGGC TTTTTTCTTTTAATT TERM 1120 1041642 - 1041658 + G 80 -2.9 -5.26918 | overlap 1041643 CGATAGCGGGCCTGA TTGGGTC GCG GACCAAG TTTTTTATCAGATCT YPN_0889 1041298 - 1043127 + | maltodextrin glucosidase TERM 1121 1043164 - 1043199 + F 87 -4.7 -5.52986 | opp_overlap 1043178 1043182, overlap 1043182 GATAACTCACTAGAG CAGCTCAGGGATAAC AATTCA GTGATAACTGAGCTG TTTTTTTGCTCCAGT YPN_0890 1043282 - 1043962 + | short chain dehydrogenase TERM 1122 1044031 - 1044002 - T 95 -12.3 -3.35813 | opp_overlap 1044001 1044002 1044004 CTCCACTCTAATGAA TATCCCCCATCAA TAGT TCGATAGGGGATA ATATTTTCAGATACT TERM 1123 1044198 - 1044186 - T 75 -10.5 -2.76468 | overlap 1044183 TAGTAGCCAATAGCA GCCCC TGC GGGGC GACGGACATCATTGG YPN_0891 1045684 - 1044170 - | gamma-glutamyltranspeptidase YPN_0892 1045935 - 1045681 - | hypothetical protein TERM 1124 1046260 - 1046283 + r 93 -12.5 -3.14132 | opp_overlap 1046260 TCTAGGGGAAAAAAA GCCAGTCAG AGTGAA CTGACTGGC TTGATAGCCCCCGAG TERM 1125 1046283 - 1046260 - R 100 -12.5 -5.44119 | opp_overlap 1046260 TCTAGGGGAAAAAAA GCCAGTCAG AGTGAA CTGACTGGC TTGATAGCCCCCGAG YPN_0893 1046926 - 1046324 - | alkyl hydroperoxide reductase subunit c TERM 1126 1047048 - 1047058 + r 73 -5.4 -4.67641 | GATAGTTTTTGCCTA TCGT TAA ACGA TTTTAGTTTTGCAGT YPN_0894 1047833 - 1047225 - | hypothetical protein queA 1047994 - 1049079 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 1127 1049163 - 1049137 - f 81 -7.4 -4.68593 | GTGATCAGGCAAAAA CAACATCAGA CTGTTTC TCTGATGCTG GAGGTTATGTGAAGT TERM 1128 1049209 - 1049194 - g 80 -2.4 -5.38249 | opp_overlap 1049204, overlap 1049196 ACGAATTACAAAAAA CGGATG GGCG CGCCCG CCGTGGTCGGCTGGT TERM 1129 1049204 - 1049225 + G 70 -9.3 -3.57462 | opp_overlap 1049194 1049196, overlap 1049218 AAAAACGGATGGGCG CGCCCGCCG TGGT CGGCTGGTG TTTGAGCGTGGCGTG TERM 1130 1049660 - 1049687 + G 73 -9.1 -3.74872 | gap 1, opp_overlap 1049654 GATGGAAATGTCACT GCGCTGGGCTGC CCGTA GCCGC-CAGCGC TTTGATGAGCTGAAT tgt 1049172 - 1050296 + | queuine tRNA-ribosyltransferase TERM 1131 1050482 - 1050464 - g 78 -9.6 -3.90112 | opp_overlap 1050463 TCCGGCTCAAGGAAA CAGCATGA CCT CCATGCTG ATCATGCTGGTAGTA yajC 1050408 - 1050743 + | preprotein translocase subunit YajC TERM 1132 1050910 - 1050880 - g 77 -10.5 -3.53091 | gap 1 ATCCGGCTGTTCAAA TCACTGGTGCGCGA GGAA TCGC-CGCCAGTGA GACAACGCTGGTCCA secD 1050771 - 1052618 + | preprotein translocase subunit SecD secF 1052629 - 1053597 + | preprotein translocase subunit SecF TERM 1133 1053657 - 1053629 - f 71 -8.9 -3.24924 | opp_overlap 1053632, overlap 1053627 1053631 1053632 GTTCGATGTATAAGA TAGCCCTGAAACT GTT AGTTTCAGGGTTT TTTGTGCCCAGAAAA TERM 1134 1053655 - 1053631 - f 84 -11.5 -3.18945 | opp_overlap 1053632, overlap 1053629 1053627 1053632 TCGATGTATAAGATA GCCCTGAAACT GTT AGTTTCAGGGT TTTTTGTGCCCAGAA TERM 1135 1053632 - 1053654 + F 100 -15 -5.24129 | opp_overlap 1053631 1053629 1053627 1053632 CGATGTATAAGATAG CCCTGAAACT GTT AGTTTCAGGG TTTTTTGTGCCCAGA TERM 1136 1053654 - 1053632 - f 100 -15 -2.51045 | opp_overlap 1053632, overlap 1053631 1053629 1053627 CGATGTATAAGATAG CCCTGAAACT GTT AGTTTCAGGG TTTTTTGTGCCCAGA TERM 1137 1053673 - 1053691 + F 100 -16 -3.07307 | opp_overlap 1053673 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1138 1053691 - 1053673 - f 100 -16 -4.36914 | opp_overlap 1053673 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0900 1053804 - 1054262 + | transposase for the IS1541 insertion element TERM 1139 1054340 - 1054364 + F 100 -9.9 -4.55295 | opp_overlap 1054343, overlap 1054342 1054343 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGTGCCCAG TERM 1140 1054342 - 1054362 + F 100 -12.5 -3.88703 | opp_overlap 1054343, overlap 1054340 1054343 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGTGCCC TERM 1141 1054343 - 1054361 + F 100 -16 -2.92499 | opp_overlap 1054343, overlap 1054342 1054340 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGCC TERM 1142 1054361 - 1054343 - f 100 -16 -4.8048 | opp_overlap 1054342 1054340 1054343 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGCC TERM 1143 1054402 - 1054384 - f 100 -16 -4.36914 | opp_overlap 1054384 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1144 1054384 - 1054402 + F 100 -16 -3.07307 | opp_overlap 1054384 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0901 1054515 - 1054973 + | transposase for the IS1541 insertion element TERM 1145 1055047 - 1055079 + F 100 -11.3 -4.43501 | opp_overlap 1055054, overlap 1055051 1055053 1055054 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTATCAGTAAATT TERM 1146 1055051 - 1055075 + F 100 -9.9 -4.7878 | opp_overlap 1055054, overlap 1055047 1055053 1055054 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTATCAGTA TERM 1147 1055053 - 1055073 + F 100 -12.5 -3.99938 | opp_overlap 1055054, overlap 1055051 1055047 1055054 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTATCAG TERM 1148 1055072 - 1055054 - f 100 -16 -4.8048 | opp_overlap 1055053 1055051 1055047 1055054 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTATCA TERM 1149 1055054 - 1055072 + F 100 -16 -2.98878 | opp_overlap 1055054, overlap 1055053 1055051 1055047 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTATCA YPN_0902 1055271 - 1055966 + | hypothetical protein TERM 1150 1056044 - 1056062 + G 79 -11.8 -3.26807 | opp_overlap 1056042, overlap 1056042 CGAACGATAGAGAGT CAGACTGA AAA TCAGTCTG TGGTTTTTAAATCAT TERM 1151 1056455 - 1056441 - g 82 -8.6 -4.54608 | TAAAAGAAACAGAAA CCAGTA AAT TACTGG ATGCGAGCATCAAAG YPN_0903 1055999 - 1056592 + | membrane protein YPN_0904 1056663 - 1057112 + | transcriptional regulator NrdR ribD 1057262 - 1058371 + | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribH 1058507 - 1058977 + | riboflavin synthase subunit beta TERM 1152 1059088 - 1059072 - g 71 -5.1 -4.57569 | opp_overlap 1059075, overlap 1059075 GCAGTTGTCTAAAAA CGACATC GCT GATGTTG AATTACAGTTCCTGT TERM 1153 1059160 - 1059200 + G 70 -3.3 -4.88918 | opp_overlap 1059175, overlap 1059162 GAATTGCTGTCAGGG GTTGCGGTTAATGCAGC ATCTCTG GATGCATTAATGGCACC TTTTCTTTCCCGTCA nusB 1058998 - 1059414 + | transcription antitermination protein NusB TERM 1154 1059626 - 1059592 - f 100 -21.8 -2.84059 | opp_overlap 1059594 1059598, overlap 1059594 1059598 GATATACATTAACGA TATAAATTAAGGCCGG TAT CCGGCCTTAATTTATA TATCAGTTAACATTT TERM 1155 1059594 - 1059624 + F 100 -20 -2.95091 | opp_overlap 1059592 1059594 1059598, overlap 1059598 TATACATTAACGATA TAAATTAAGGCCGG TAT CCGGCCTTAATTTA TATATCAGTTAACAT TERM 1156 1059624 - 1059594 - f 100 -20 -2.96235 | opp_overlap 1059594 1059598, overlap 1059592 1059598 TATACATTAACGATA TAAATTAAGGCCGG TAT CCGGCCTTAATTTA TATATCAGTTAACAT TERM 1157 1059620 - 1059598 - f 100 -16.4 -4.14541 | opp_overlap 1059598 1059594, overlap 1059594 1059592 CATTAACGATATAAA TTAAGGCCGG TAT CCGGCCTTAA TTTATATATCAGTTA TERM 1158 1059598 - 1059620 + F 100 -16.4 -4.15061 | opp_overlap 1059594 1059592 1059598, overlap 1059594 CATTAACGATATAAA TTAAGGCCGG TAT CCGGCCTTAA TTTATATATCAGTTA YPN_0908 1059655 - 1060644 + | thiamine monophosphate kinase YPN_0909 1060637 - 1061122 + | phosphatidylglycerophosphatase A TERM 1159 1061161 - 1061190 + F 95 -12.3 -3.28712 | opp_overlap 1061165, overlap 1061165 AGAGAGACTATCACG TAAAGGCATAACC CACG GGCTATGCCTTTA TTGTGCCCAGAAAAC TERM 1160 1061165 - 1061186 + F 86 -8.7 -4.30719 | opp_overlap 1061165, overlap 1061161 AGACTATCACGTAAA GGCATAACC CACG GGCTATGCC TTTATTGTGCCCAGA TERM 1161 1061186 - 1061165 - f 84 -10.9 -3.6959 | opp_overlap 1061161 1061165 AGACTATCACGTAAA GGCATAACC CACG GGCTATGCC TTTATTGTGCCCAGA TERM 1162 1061223 - 1061205 - f 100 -16 -4.37092 | opp_overlap 1061205 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1163 1061205 - 1061223 + F 100 -16 -3.07307 | opp_overlap 1061205 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_0910 1061336 - 1061794 + | transposase for the IS1541 insertion element TERM 1164 1061868 - 1061900 + T 100 -11.3 -4.13973 | opp_overlap 1061875, overlap 1061872 1061874 1061875 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTGTTTCTGATATCT TERM 1165 1061872 - 1061896 + T 100 -9.9 -4.63952 | opp_overlap 1061875, overlap 1061868 1061874 1061875 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTTTCTGAT TERM 1166 1061874 - 1061894 + T 100 -12.5 -3.91443 | opp_overlap 1061875, overlap 1061872 1061868 1061875 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTTTCTG TERM 1167 1061893 - 1061875 - T 100 -16 -4.8048 | opp_overlap 1061875 1061874 1061872 1061868 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTTCT TERM 1168 1061875 - 1061893 + T 100 -16 -2.93239 | opp_overlap 1061875, overlap 1061874 1061872 1061868 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTTCT YPN_0911 1063832 - 1061973 - | 1-deoxy-D-xylulose-5-phosphate synthase YPN_0912 1064908 - 1063988 - | geranyltranstransferase TERM 1169 1064552 - 1064525 - G 78 -6.2 -4.90471 | gap 1 AGCCAAAATAGAAAA GGCCAGCGTTTGC AGT GCAT-CACCGGCC AAAATAGCGTGGGCC YPN_0913 1065206 - 1064913 - | exodeoxyribonuclease VII small subunit TERM 1170 1065121 - 1065139 + g 72 -8.2 -3.96148 | TCACTGAGTGATGTT TCAAAGCT GGC GGCTTTGA TTTCTGGTGAAGCGG YPN_0914 1065249 - 1065419 + | hypothetical protein YPN_0915 1065517 - 1066968 + | thiamine biosynthesis protein ThiI TERM 1171 1067056 - 1067084 + T 72 -9.5 -3.109 | opp_overlap 1067056, overlap 1067056 CCCGATAATTATAAA TTCCTGGCGGCAA CAC TAGCTGCCAGGCA ATTTCTTCCGCCTTT TERM 1172 1067056 - 1067085 + T 76 -7.9 -4.19974 | gap 1, opp_overlap 1067056, overlap 1067056 CCCGATAATTATAAA TT-CCTGGCGGCAA CAC TAGCTGCCAGGCAA TTTCTTCCGCCTTTT TERM 1173 1067084 - 1067056 - T 73 -7.3 -4.1021 | opp_overlap 1067056 1067056 CCCGATAATTATAAA TTCCTGGCGGCAA CAC TAGCTGCCAGGCA ATTTCTTCCGCCTTT YPN_0916 1067626 - 1067036 - | hypothetical protein YPN_0917 1068500 - 1067589 - | 2-dehydropantoate 2-reductase YPN_0918 1068732 - 1068953 + | hypothetical protein YPN_0919 1069742 - 1068963 - | transposase/IS protein TERM 1174 1069661 - 1069675 + g 77 -11.4 -3.3506 | overlap 1069674 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_0920 1070764 - 1069742 - | transposase for insertion sequence IS100 TERM 1175 1070786 - 1070768 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_0921 1070823 - 1071182 + | nucleotide-binding protein TERM 1176 1071247 - 1071276 + T 71 -8.5 -3.44622 | opp_overlap 1071247 GGTATAACGACTAAA GGGGCAACGGCTT TTTC ATGTCTTTGCCCC TTAATTCTGGCCCTA YPN_0922 1072670 - 1071306 - | transporter TERM 1177 1073085 - 1073123 + r 100 -11 -4.48299 | opp_overlap 1073089, overlap 1073089 AACAGGGAACAAATA CAAAGTGGCTGGCAAGAG CGA TTCCTGCCAGCCACTTGA TTTATTTCACTCTCA TERM 1178 1073119 - 1073089 - R 100 -17.7 -4.46072 | opp_overlap 1073089 1073085 GGGAACAAATACAAA GTGGCTGGCAAGA GCGAT TCCTGCCAGCCAC TTGATTTATTTCACT TERM 1179 1073089 - 1073119 + r 100 -16.2 -3.76486 | opp_overlap 1073089, overlap 1073085 GGGAACAAATACAAA GTGGCTGGCAAGAG CGA TTCCTGCCAGCCAC TTGATTTATTTCACT YPN_0923 1074041 - 1073154 - | protoheme IX farnesyltransferase YPN_0924 1074387 - 1074055 - | cytochrome o ubiquinol oxidase subunit IV YPN_0925 1075001 - 1074387 - | cytochrome o ubiquinol oxidase subunit III TERM 1180 1074700 - 1074713 + g 71 -6.7 -4.15854 | AAGGTGAAGCCCAAC CAGGT ATTG ACCTG TTTTACACTCCCTTT TERM 1181 1074938 - 1074978 + g 77 -12 -3.17714 | gap 2, overlap 1074944 1074950 ATACTTTCGTCGCTC CCGCATCGTGATGCCCATGC TCT GCATGGGC-T-ACGTTGTGG TTAGTCAGAGTTTCA TERM 1182 1074944 - 1074972 + g 70 -9 -3.54029 | gap 2, overlap 1074938 1074950 TCGTCGCTCCCGCAT CGTGATGCCCATGC TCT GCATGGGC-T-ACG TTGTGGTTAGTCAGA TERM 1183 1074950 - 1074968 + g 81 -14.6 -2.63614 | overlap 1074944 1074938 CTCCCGCATCGTGAT GCCCATGC TCT GCATGGGC TACGTTGTGGTTAGT YPN_0926 1076982 - 1074991 - | cytochrome O ubiquinol oxidase subunit I TERM 1184 1075919 - 1075896 - G 71 -6 -4.32804 | ACAACCAATTGAAAA TTTTCACCCC TGTT GGGATGGAAA TGATCATCGTGGCAA YPN_0927 1077943 - 1076987 - | cytochrome o ubiquinol oxidase subunit II TERM 1185 1077056 - 1077071 + g 74 -2.6 -5.09173 | gap 1, overlap 1077049 1077064 1077068 CATATCCATGCCTTT TGGC-AT GTC ATGGCCA TTTTTTGGCATGTTC TERM 1186 1078071 - 1078086 + r 80 -9 -3.95674 | ACTTTATGTTAAGGG GGTCAC AGAT GTGACC TTATTTGGCAATTTT TERM 1187 1078266 - 1078301 + r 72 -7.1 -4.04295 | opp_overlap 1078264 1078266 1078268, overlap 1078268 AGGTAAATTAAAATA T-ATTTCGAGGTGTCCT AAAT AGG-CACCTCGGAATCA TTTAGTTATAGTTAG TERM 1188 1078298 - 1078268 - R 73 -9.1 -3.51998 | gap 1, opp_overlap 1078266 1078268, overlap 1078266 1078264 GTAAATTAAAATATA TTTCGAGGTGTCCT AAAT AGG-CACCTCGGAA TCATTTAGTTATAGT TERM 1189 1078268 - 1078298 + r 83 -11.3 -3.05266 | gap 1, opp_overlap 1078268 1078266 1078264, overlap 1078266 GTAAATTAAAATATA TTTCGAGGTGTCCT AAAT AGG-CACCTCGGAA TCATTTAGTTATAGT YPN_0928 1079080 - 1078313 - | hypothetical protein TERM 1190 1079234 - 1079220 - R 85 -2.1 -5.75342 | TTTTTTTAAAAAAAA CATGC AACAA ACATG AAAAGTTGTGATTTA TERM 1191 1079349 - 1079322 - R 86 -3.4 -5.59879 | GATAAACACAAAAAA GCCAGTGC ACAAACTGAACA GCACCGGC TTTATGTCACTTATG ampG 1080850 - 1079372 - | muropeptide transporter TERM 1192 1079722 - 1079704 - G 73 -3 -4.91194 | overlap 1079706 AGAATAAATAGAAAA GTGGCC AGCCATG GGCCTC TACAAACCAACCGGC TERM 1193 1080644 - 1080626 - G 73 -5.9 -4.58395 | overlap 1080606 CCGACGCCCTAAAAA GGACGGC GTGTA GCGGTCC ATCAGCGGGGACCAA TERM 1194 1080863 - 1080891 + r 73 -8.2 -3.65991 | gap 1, opp_overlap 1080861 CATAATAAATCTACC TGCTCTGCCGCAA GGTA TCG-GGCAGAGCA TTCTGTTGAGCAACT YPN_0930 1081546 - 1080968 - | hypothetical protein YPN_0931 1081895 - 1082215 + | transcriptional regulator BolA TERM 1195 1082282 - 1082307 + F 91 -10.5 -4.12532 | opp_overlap 1082288, overlap 1082284 1082288 AGTAGATGAGAATTT TACAAACGGCT CTAG GGCCGTTTGTG TTTCTGTATAGGCGA TERM 1196 1082284 - 1082305 + F 84 -10.9 -3.65996 | opp_overlap 1082288, overlap 1082282 1082288 TAGATGAGAATTTTA CAAACGGCT CTAG GGCCGTTTG TGTTTCTGTATAGGC TERM 1197 1082288 - 1082301 + F 73 -5.9 -4.44187 | opp_overlap 1082288, overlap 1082284 1082282 TGAGAATTTTACAAA CGGCT CTAG GGCCG TTTGTGTTTCTGTAT tig 1082632 - 1083936 + | trigger factor TERM 1198 1083954 - 1083976 + F 95 -9.2 -4.4959 | overlap 1083956 TTTTTCAGCGCATGA TGCTGGATGG GAC CCATTCAGTA TTTTGATTGATTAAG TERM 1199 1083956 - 1083974 + F 81 -9.6 -3.85043 | overlap 1083954 TTTCAGCGCATGATG CTGGATGG GAC CCATTCAG TATTTTGATTGATTA TERM 1200 1083991 - 1084016 + F 100 -11.1 -5.50723 | opp_overlap 1083991 ATTTTGATTGATTAA GCCCGTCGCCA TTAT TGGTCACGGGC TTTTTCTTTTGGTAA TERM 1201 1084570 - 1084583 + G 76 -6.7 -4.56597 | opp_overlap 1084570 TGGCTAACCTAATCA CAGCA CAGA TGCTG TTTTTGGAAGCCGAG clpP 1084398 - 1085021 + | ATP-dependent Clp protease proteolytic subunit clpX 1085227 - 1086498 + | ATP-dependent protease ATP-binding subunit TERM 1202 1086532 - 1086550 + F 100 -13.2 -4.91852 | opp_overlap 1086532 CAGTTAGTATGACAA TGGGGGAT TTT ATCCCCCA TTTCTTTTTCCTCGC TERM 1203 1086550 - 1086532 - f 100 -13.2 -3.44527 | opp_overlap 1086532 CAGTTAGTATGACAA TGGGGGAT TTT ATCCCCCA TTTCTTTTTCCTCGC TERM 1204 1086636 - 1086650 + F 72 -10 -2.7752 | opp_overlap 1086626, overlap 1086635 TGAAACTCGTGATGA CTCGTG TTT CACGAG ATTTCCAGTAATCTG TERM 1205 1087145 - 1087135 - g 100 -5.4 -5.83226 | opp_overlap 1087139 AACTGAACAAAAAAA TTCC GCC GGAA GTGCTGGCTTCGCTG YPN_0935 1086639 - 1089047 + | DNA-binding ATP-dependent protease La TERM 1206 1089081 - 1089108 + F 72 -6.3 -4.25873 | opp_overlap 1089081 ATTGATAAAACTAAT GCTGGTAAGTG AAATCC TGCTTGCCAGC TATTTTTTGTGCCGC YPN_0936 1089265 - 1089537 + | transcriptional regulator HU subunit beta TERM 1207 1089641 - 1089622 - f 70 -9.3 -2.81609 | opp_overlap 1089622, overlap 1089614 1089621 AAGGTAAGATACAAG GCGCATC GTTTAT GATGCGC TTTTTTTTCGCTTAG TERM 1208 1089622 - 1089641 + F 100 -10 -5.86332 | opp_overlap 1089614 1089621 1089622 AAGGTAAGATACAAG GCGCATCG TTTA TGATGCGC TTTTTTTTCGCTTAG TERM 1209 1090991 - 1090981 - g 74 -4.6 -4.81083 | opp_overlap 1090978 CTTAAGCAGGAAAAA GCGC TTG ACGC TTATTATGCGCTACA YPN_0937 1089838 - 1091724 + | peptidyl-prolyl cis-trans isomerase (rotamase D) TERM 1210 1091782 - 1091759 - f 100 -15.4 -4.68384 | opp_overlap 1091763, overlap 1091763 ACCGATGTAATAAAA GAAAGGTCGC TTTG GCGACCTTTC GCATATCTGTGATCT TERM 1211 1091763 - 1091778 + F 82 -10.4 -3.66139 | opp_overlap 1091759 1091763 ATGTAATAAAAGAAA GGTCGC TTTG GCGACC TTTCGCATATCTGTG TERM 1212 1091778 - 1091763 - f 100 -10.4 -4.88795 | opp_overlap 1091763, overlap 1091759 ATGTAATAAAAGAAA GGTCGC TTTG GCGACC TTTCGCATATCTGTG TERM 1213 1092001 - 1091986 - g 74 -2.4 -5.07107 | overlap 1091988 1091997 TAAAGTCTCAAAAAA GTCGCC TAAT AGCGCC GCAGATAACGGCGCT YPN_0938 1091864 - 1092310 + | hypothetical protein TERM 1214 1092431 - 1092474 + F 83 -8.8 -4.08945 | gap 1, opp_overlap 1092431 1092432 AAGTTGGTAAATCAA GCCGCCAGGC-GGTGCTGGCC ATC GGTAGGTATTGGTCTGGCGGC TTTTACCAACATAAT YPN_0939 1092664 - 1093071 + | hypothetical protein YPN_0940 1093855 - 1093157 - | queuosine biosynthesis protein QueC YPN_0941 1095823 - 1094120 - | hypothetical protein TERM 1215 1094313 - 1094331 + g 74 -2.4 -5.19212 | overlap 1094314 GGCGCGCTTTCTATC TGCTGA ATGAAGG TCAGCG TTTTTTGCTGCTGGT TERM 1216 1094880 - 1094891 + g 71 -5.8 -4.29326 | ATGCGAACCGGATGC TGGC AACT GCCA TTTGTTGAATTTACC YPN_0942 1095928 - 1096749 + | haloacid dehalogenase-like hydrolase TERM 1217 1096769 - 1096784 + T 100 -6.1 -5.8187 | ATAGCTATTAGCCAG CCGGA GAACCA TCCGG TTTTTTTCTTCCGTA TERM 1218 1096801 - 1096837 + T 100 -10.3 -4.74013 | TTTTTTCTTCCGTAG GCGGTTTGTCAGT GTTCATGCCTA GCTGACAAACCGC TTTTATCTCTTTGAA YPN_0943 1098001 - 1096961 - | pyridoxal-phosphate dependent protein TERM 1219 1097648 - 1097637 - G 73 -5.8 -4.43844 | opp_overlap 1097647, overlap 1097639 GCATGATCGACAAAA TGGC AACG GCCA CCGTAGAAGGTGATT YPN_0944 1098127 - 1098588 + | transcription regulator AsnC TERM 1220 1099302 - 1099283 - g 82 -12.2 -3.61398 | opp_overlap 1099279 TTCTTTGCTTAATAA TCAGGCTC AAGA GAGCCTGA CCAGTATTCGCATGA TERM 1221 1100244 - 1100231 - g 74 -2.3 -5.12707 | TGAAATTTTAAAAAA CCTAC GCGA GTGGG GCGAACAGCGTACCG YPN_0945 1098690 - 1100456 + | putative multidrug transporter membrane\ATP-binding components TERM 1222 1102038 - 1102023 - g 73 -3.2 -5.0538 | opp_overlap 1102023 1102025, overlap 1102025 GGTGATTCGAAAAAA TACCAC GCTG GTGGTT ATTGCTCATCGCCTT YPN_0946 1100449 - 1102272 + | putative multidrug transporter membrane\ATP-binding components TERM 1223 1102281 - 1102302 + F 100 -13.7 -4.22554 | GAGTTAAGCAGCACG CGTGGGGTG ATGT CGCCCCACG TTATTTATTGACTCA TERM 1224 1102888 - 1102863 - g 74 -4.1 -5.00138 | gap 1 TACCCAAAGTAAAAA TTGAT-ATCGCC ATC GCCGATGATCAA TTAGACGAAGTGATT YPN_0947 1102682 - 1103020 + | nitrogen regulatory protein P-II 2 YPN_0948 1103060 - 1104349 + | ammonium transporter TERM 1225 1104558 - 1104513 - T 72 -7.5 -4.04089 | opp_overlap 1104518 1104520 1104523 1104525, overlap 1104520 1104523 AAAAATACATAATAA TGATGAACTACAGGGGCGATG GTGA CATCGCCCCTGTGCTATTTCA TTGATTCATCAACTG TERM 1226 1104518 - 1104553 + T 100 -12.6 -4.01419 | opp_overlap 1104513 1104520 1104523, overlap 1104520 1104523 1104525 TACATAATAATGATG AACTACAGGGGCGATG GTGA CATCGCCCCTGTGCTA TTTCATTGATTCATC TERM 1227 1104520 - 1104551 + T 100 -15.2 -3.59031 | opp_overlap 1104513 1104520 1104523, overlap 1104518 1104523 1104525 CATAATAATGATGAA CTACAGGGGCGATG GTGA CATCGCCCCTGTGC TATTTCATTGATTCA TERM 1228 1104550 - 1104520 - T 100 -16.3 -3.34242 | gap 1, opp_overlap 1104520 1104518 1104523 1104525, overlap 1104513 1104523 CATAATAATGATGAA CTACAGGGGCGATG GTGA CATCGCCCCTGT-G CTATTTCATTGATTC TERM 1229 1104523 - 1104548 + T 100 -19.1 -2.906 | opp_overlap 1104520 1104513 1104523, overlap 1104520 1104518 1104525 AATAATGATGAACTA CAGGGGCGATG GTGA CATCGCCCCTG TGCTATTTCATTGAT TERM 1230 1104548 - 1104523 - T 100 -19.1 -2.8293 | opp_overlap 1104523 1104520 1104518 1104525, overlap 1104520 1104513 AATAATGATGAACTA CAGGGGCGATG GTGA CATCGCCCCTG TGCTATTTCATTGAT TERM 1231 1104525 - 1104546 + T 100 -15.9 -2.9955 | opp_overlap 1104523 1104520 1104513, overlap 1104523 1104520 1104518 TAATGATGAACTACA GGGGCGATG GTGA CATCGCCCC TGTGCTATTTCATTG YPN_0949 1105469 - 1104609 - | acyl-CoA thioesterase II TERM 1232 1105305 - 1105321 + g 74 -6.5 -4.41616 | AAATGAGTGAACAGT CCGTTCT GCG GGGACGG TTTGTTTCGCAGCAT TERM 1233 1105891 - 1105877 - g 77 -11.4 -3.44146 | opp_overlap 1105873 1105871 CGGTCGCACAATCAA CGGTCC ATG GGACCG TGAATATTCGTGAAC YPN_0950 1105726 - 1106247 + | lipoprotein YPN_0951 1106838 - 1106383 - | 6-O-methylguanine DNA methyltransferase family protein TERM 1234 1107254 - 1107265 + r 79 -3 -5.27335 | TTGTCGTGAACGCTC TCTA TCAG TAGA TTTTTATTTCCGGCA TERM 1235 1107324 - 1107340 + r 76 -6.6 -4.46652 | AAAATAAGATTCCTC CCATTC TGAAC GAATGG TTTGATTTTTATTTA YPN_0952 1107863 - 1107660 - | hemolysin expression-modulating protein YPN_0953 1108280 - 1107912 - | hypothetical protein YPN_0954 1108792 - 1108439 - | hypothetical protein TERM 1236 1108588 - 1108572 - G 70 -8.1 -3.71745 | opp_overlap 1108570, overlap 1108570 CAAGCATTGAAAATA TACCAAT TAT ATTGGTA AGTCATTGAATACTG TERM 1237 1108606 - 1108616 + g 76 -5.4 -4.8048 | overlap 1108608 1108608 TCATTGAATACTGGT TCTC TTT GAGA TTTTTAATCTCAAGA TERM 1238 1109573 - 1109545 - R 88 -6.7 -5.24551 | gap 1, opp_overlap 1109545 GCAAATGAATAAAAA GGCCCGTTG-GC GTTAGT GCACAAAGGGCC TTTTGGGGACTGATG TERM 1239 1109545 - 1109573 + r 73 -7.4 -4.10161 | gap 1, opp_overlap 1109545 GCAAATGAATAAAAA GGCCCGTTG-GCG TTAG TGCACAAAGGGCC TTTTGGGGACTGATG rpmJ 1109809 - 1109666 - | 50S ribosomal protein L36 rpmE2 1110085 - 1109825 - | 50S ribosomal protein L31 type B TERM 1240 1110238 - 1110223 - R 100 -11.8 -5.1356 | opp_overlap 1110223 GCTCAGCAATAAAAA GGCCGC TTGC GCGGCC TTTAGTATGAAATGA TERM 1241 1110223 - 1110238 + r 100 -11.8 -3.83998 | opp_overlap 1110223 GCTCAGCAATAAAAA GGCCGC TTGC GCGGCC TTTAGTATGAAATGA YPN_0957 1113423 - 1110271 - | multidrug efflux protein TERM 1242 1113297 - 1113336 + g 85 -12.3 -3.78775 | TGGCGGCAATTGTAA TTGCCGGTGGCGCAATG GTCGGA TATTGCGCTACTGGTAA TTTCATGATCGCAAG YPN_0958 1114627 - 1113440 - | multidrug efflux protein TERM 1243 1114598 - 1114616 + g 78 -6 -4.77438 | TACCAGAATTGCAGC CAGAGG CATTACC CCTCTG TTTTTGCTCATAGAT TERM 1244 1114885 - 1114913 + G 77 -9.5 -3.74747 | overlap 1114888 TCTTACCGATATTGC TATCGCTGCGGGT GTA ACCCGAGGCGCTA TTTACTGGCACTTCA TERM 1245 1114888 - 1114910 + G 70 -11.2 -2.66873 | overlap 1114885 TACCGATATTGCTAT CGCTGCGGGT GTA ACCCGAGGCG CTATTTACTGGCACT YPN_0959 1114772 - 1115428 + | DNA-binding transcriptional repressor AcrR YPN_0960 1115441 - 1115794 + | hypothetical protein YPN_0961 1116033 - 1119452 + | potassium efflux protein KefA YPN_0962 1119947 - 1119792 - | hypothetical protein YPN_0963 1120654 - 1120118 - | primosomal replication protein n'' TERM 1246 1120246 - 1120260 + g 74 -7.8 -4.21343 | CAACTAACAAACTCT GCCGAC CCA GTTGGC TTTCTCTGTCTTGGA TERM 1247 1120807 - 1120822 + H 76 -7.6 -4.15222 | opp_overlap 1120806 TGGTCGGCACTACAT GCGTTA ATGA TAACGC TTTCTTGACGAAAGT YPN_0964 1120855 - 1121235 + | hypothetical protein YPN_0965 1121474 - 1122037 + | adenine phosphoribosyltransferase TERM 1248 1122187 - 1122201 + F 75 -5.7 -4.58424 | GTTAAGGTATTCCAG CCAGA CAAAC TCTGG TTTTATATCGTCATA TERM 1249 1124065 - 1124024 - g 100 -10 -5.58179 | overlap 1124030 1124063 GACCACAACAAAAAA GAATGAGCCGGCGGCGCC AGGAAA AGCGCGGCCGGCAAACTC AGCACTGGAGCGTTT TERM 1250 1124059 - 1124030 - g 86 -14.2 -3.2756 | overlap 1124024 AACAAAAAAGAATGA GCCGGCGGCGCC AGGAAA AGCGCGGCCGGC AAACTCAGCACTGGA TERM 1251 1124168 - 1124142 - g 79 -7.3 -4.46675 | overlap 1124159 ACGGAAGAGAAGAAA CCAGCGAAAAA AGAAG CTTATCGCTGG ACCGCGAAAAATCAA YPN_0966 1122693 - 1124669 + | DNA polymerase III subunits gamma and tau TERM 1252 1124798 - 1124786 - g 76 -3.4 -5.17353 | AGATGCAGGAAAAAA TGCA GCAGA TGCA GGAAGAAGTCGCCAA TERM 1253 1125033 - 1125002 - g 74 -3.6 -4.98672 | CGCAAAAAGAGAAAA TGGCCTCTGTATCC AATG GGATGCAATTGCCA CCAGGCTTTAAGATG YPN_0967 1124725 - 1125057 + | hypothetical protein recR 1125057 - 1125662 + | recombination protein RecR YPN_0969 1125677 - 1125835 + | hypothetical protein TERM 1254 1126052 - 1126083 + G 74 -9.6 -3.57792 | opp_overlap 1126050, overlap 1126042 GATGGCGAACTGAGA GTGCGTTTATCTTT TGAT AAAGAGAAACGTAC TTTAACCCTGAGTGA YPN_0970 1125854 - 1127728 + | heat shock protein 90 TERM 1255 1127741 - 1127769 + F 91 -6.8 -5.56673 | gap 1, opp_overlap 1127741 TAATCGATAAAAAAA CACCCTTGTTCAA CGTA TTGC-CAAGGGTG TTTTTTATTGTACCT TERM 1256 1127769 - 1127741 - f 100 -6.8 -5.66684 | gap 1, opp_overlap 1127741 TAATCGATAAAAAAA CACCCTTGTTCAA CGTA TTGC-CAAGGGTG TTTTTTATTGTACCT adk 1127955 - 1128599 + | adenylate kinase TERM 1257 1128615 - 1128645 + F 100 -17 -3.59979 | opp_overlap 1128622, overlap 1128608 1128607 TTCTGGATGGCCTTA TAGCTAAGGCGGTT TAA GGCCGCCTTAGCTA TTTCAAGTAAGAAGG hemH 1128689 - 1129651 + | ferrochelatase TERM 1258 1130169 - 1130181 + F 80 -2.7 -5.53288 | CTTTTTTGTTTCTAT TTTAG TCA CTGAA TTTTTTTGACTTAAG TERM 1259 1130813 - 1130827 + G 85 -7.8 -4.90266 | opp_overlap 1130813 CTTTTACGAATTGAA GGTCCT CAA GGGACC TTTTTCGTTCGTGAA YPN_0973 1130249 - 1131238 + | CDP-6-deoxy-delta-3,4-glucoseen reductase TERM 1260 1131254 - 1131239 - f 72 -6.2 -4.25256 | GTGCCATCAAAATAA CTTTGA GAGA TCAAAG TAATACGTAATGGAG YPN_0974 1131264 - 1132049 + | glucose-1-phosphate cytidylyltransferase YPN_0975 1132054 - 1132197 + | hypothetical protein YPN_0976 1132190 - 1133128 + | CDP-glucose 4,6-dehydratase YPN_0977 1133146 - 1134459 + | putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase TERM 1261 1134470 - 1134485 + F 100 -9 -5.58454 | opp_overlap 1134470 1134469 1134472 TTTAACAGGAGCAAG GAGGCA ACAC TGCCTC TTTTTTTAATATGAA YPN_0978 1134496 - 1135353 + | paratose synthase TERM 1262 1136481 - 1136429 - g 84 -2 -5.64006 | gap 1, opp_overlap 1136476 ATGCAATGAAAAAAA TGGGAGTTGCAAATGATG-AAGATA TTGT TTTCTTGCATCACAAGCGTCTCCCA TGGGGTAATGTAGTA YPN_0979 1135354 - 1136637 + | hypothetical protein TERM 1263 1137892 - 1137930 + G 100 -15.7 -4.2535 | overlap 1137928 ATCGTTATTTTCTGG TGGACTGATAATATTAT TATCC ATAATGTTATCAGTCCA TTTTAAATATGGTGT YPN_0980 1136816 - 1138054 + | O-unit flippase YPN_0981 1138065 - 1138778 + | hypothetical protein TERM 1264 1140153 - 1140141 - g 100 -4.9 -5.95286 | AGTAAAAATAAAAAA TATAG AAG CTATA AAATTAAAAATCCCC TERM 1265 1140238 - 1140248 + G 83 -5.4 -5.09762 | TATATTACTGATGAT GAAC CTG GTTC TTTTTATATTACGAT YPN_0982 1139158 - 1140300 + | mannosyltransferase TERM 1266 1140662 - 1140680 + G 76 -6 -4.63863 | opp_overlap 1140666, overlap 1140666 TCCCATATTTTCTAT TACAGCAC CCA GTGCTATA TTCTTTTTCTATTAC TERM 1267 1141176 - 1141188 + G 76 -6.3 -4.67755 | CGCACTGAATAATTC TGCAA TGC TTGCA TTTTTCCCTGACTAT YPN_0983 1140586 - 1141518 + | O-unit polymerase-like protein YPN_0984 1141767 - 1142780 + | mannosyltransferase YPN_0985 1142796 - 1143314 + | hypothetical protein YPN_0986 1143232 - 1143918 + | GDP-mannose 4,6-dehydratase YPN_0987 1143924 - 1144889 + | GDP-fucose synthetase YPN_0988 1145076 - 1146482 + | mannose-1-phosphate guanylyltransferase TERM 1268 1146818 - 1146803 - g 70 -4.7 -4.60924 | opp_overlap 1146803 GAAACCTTTGAAAAA CAGCA ATGTGA TGCTG TATATGGTGACTTAC TERM 1269 1146915 - 1146936 + G 76 -4.4 -4.96848 | overlap 1146918 AAAAAATGAAGTATG GTTGGATG CCTCCC CATCCTAC TTTTTATATGAAACG YPN_0989 1146485 - 1147228 + | glycosyltransferase YPN_0990 1147233 - 1148606 + | phosphomannomutase TERM 1270 1148768 - 1148747 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_0991 1149353 - 1148742 - | transposase YPN_0992 1149951 - 1149376 - | transposase YPN_0993 1150152 - 1151129 + | ferric enterobactin transport protein FepE TERM 1271 1151147 - 1151183 + F 74 -6.6 -4.39426 | gap 1, opp_overlap 1151151, overlap 1151151 TTTAAACGAATTTAT C-TAACGGCTGGGTGAG GTTT CTCATCTGGCCGTTCTG TTTTATCACCCTGTA TERM 1272 1151151 - 1151178 + F 100 -12 -4.02581 | opp_overlap 1151151, overlap 1151147 AACGAATTTATCTAA CGGCTGGGTGAG GTTT CTCATCTGGCCG TTCTGTTTTATCACC TERM 1273 1152189 - 1152200 + G 71 -7.2 -4.03413 | overlap 1152182 TGTTATGTACCGCAG GCCC CAGC GGGC TTTATATGGCGGGAT YPN_0994 1151333 - 1152637 + | inosine-guanosine kinase TERM 1274 1152657 - 1152691 + T 100 -13.6 -5.06816 | opp_overlap 1152659 1152660, overlap 1152660 GTAGACGCGGGATAT AAGTCAGGGCCAGCAT AGT AAGCTGGCCCTGATTG TTTTTATTACAGAGT TERM 1275 1152689 - 1152659 - T 100 -14 -3.49102 | opp_overlap 1152657 1152660, overlap 1152660 AGACGCGGGATATAA GTCAGGGCCAGCAT AGT AAGCTGGCCCTGAT TGTTTTTATTACAGA TERM 1276 1152660 - 1152688 + T 100 -17.5 -4.63592 | opp_overlap 1152659 1152660, overlap 1152657 GACGCGGGATATAAG TCAGGGCCAGCAT AGT AAGCTGGCCCTGA TTGTTTTTATTACAG TERM 1277 1152688 - 1152660 - T 100 -17.5 -2.6914 | opp_overlap 1152660 1152657, overlap 1152659 GACGCGGGATATAAG TCAGGGCCAGCAT AGT AAGCTGGCCCTGA TTGTTTTTATTACAG YPN_0995 1154425 - 1152734 - | putative cation:proton antiport protein TERM 1278 1153393 - 1153382 - G 82 -7.2 -4.68908 | opp_overlap 1153381 CCCAGCCAAAATAAA GGCG AACT CGCC GATTTGTGCCAAACT YPN_0996 1155874 - 1154660 - | membrane efflux protein TERM 1279 1155082 - 1155067 - G 70 -2.6 -5.00196 | CCGCAAATAAGAAAA CAAATA GGTG TATCTG GGCACTTTGTACCGA YPN_0997 1156156 - 1156413 + | protein UshA precursor: UDP-sugar hydrolase (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) YPN_0998 1156226 - 1157194 + | 5'-nucleotidase/2' 3'-cyclic phosphodiesterase YPN_0999 1157188 - 1157811 + | hypothetical protein YPN_1000 1158154 - 1157915 - | hypothetical protein TERM 1280 1158320 - 1158346 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 1158309, overlap 1158315 1158321 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1281 1158321 - 1158347 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 1158309, overlap 1158315 1158320 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1282 1158410 - 1158424 + r 73 -7.2 -4.10437 | overlap 1158398 TTGTCAGCAGTCTGA TGAGTT TTA AACTCA TTCTTTCCTTCATAG YPN_1001 1158979 - 1158491 - | hypothetical protein TERM 1283 1159207 - 1159228 + r 100 -10.9 -5.87996 | AAATTCCTCTTTGAC TGGCCGGTA GTGA TATCGGCCA TTTTTTTATTGATTG YPN_1002 1160043 - 1159234 - | hypothetical protein TERM 1284 1160550 - 1160511 - R 100 -17.4 -3.2614 | gap 1, opp_overlap 1160503, overlap 1160512 CATTTTGGATATCAA CGCTCAATGGCGCACAAAA CGA TATTGTGCGCCATTGAG-G TCACTGAAAGCATTT TERM 1285 1160550 - 1160512 - R 100 -17.6 -2.5547 | opp_overlap 1160503, overlap 1160511 ATTTTGGATATCAAC GCTCAATGGCGCACAAAA CGA TATTGTGCGCCATTGAGG TCACTGAAAGCATTT YPN_1003 1163449 - 1160564 - | copper exporting ATPase TERM 1286 1161671 - 1161647 - G 75 -10.7 -3.45118 | overlap 1161649 GCAGGCGATAATTAA CACCGTGGTGG CCA CCACCAGGGTA TAGACCAACTGGGGT TERM 1287 1161669 - 1161649 - G 76 -11.1 -3.29593 | overlap 1161647 AGGCGATAATTAACA CCGTGGTGG CCA CCACCAGGG TATAGACCAACTGGG TERM 1288 1162292 - 1162328 + g 70 -4.9 -4.59773 | overlap 1162293 1162294 CCAGGCCGCACCTGT CCCCAGAGCGACCAAGG TAT CCATGGTCGCACTGCCA TTTTTCAGGCTGACC TERM 1289 1162294 - 1162326 + g 73 -11.9 -2.61004 | overlap 1162293 1162292 AGGCCGCACCTGTCC CCAGAGCGACCAAGG TAT CCATGGTCGCACTGC CATTTTTCAGGCTGA TERM 1290 1162943 - 1162958 + g 71 -6.8 -4.15222 | opp_overlap 1162953, overlap 1162944 ATCAGAAACCGTACT TGTGGC TAAA GCCACG TTTGTTGCCGGAACT TERM 1291 1163696 - 1163684 - g 91 -5.5 -5.40474 | ATGTTGCGAAAAAAA CCGGT TTA ACCAG CAAAGCCATTCGTTT TERM 1292 1163743 - 1163728 - g 100 -4.6 -6.13503 | opp_overlap 1163730, overlap 1163730 TATGAAGAAAAAAAA CTGGTG ACGC CACCTG TTCGCACGGATAACG TERM 1293 1163794 - 1163825 + G 100 -13.8 -4.14739 | gap 1, opp_overlap 1163793 1163791 AAACATATTGAAGAG CTCACGTTGCTGCGC CAG GCGCGGCAA-GTGGG TTTTACACTGGATGA YPN_1004 1163656 - 1164075 + | regulatory protein TERM 1294 1164089 - 1164134 + T 100 -13.5 -3.80114 | opp_overlap 1164096, overlap 1164093 1164095 1164096 1164126 AATACGCTGCCGTGA TAAATAACCCGAATCACCTAC CAGA GTAAGTGATTCGGGCTGTTTG TTTACTGCCTTGCTG TERM 1295 1164093 - 1164130 + T 100 -12.1 -4.5123 | opp_overlap 1164096, overlap 1164089 1164095 1164096 1164126 CGCTGCCGTGATAAA TAACCCGAATCACCTAC CAGA GTAAGTGATTCGGGCTG TTTGTTTACTGCCTT TERM 1296 1164095 - 1164128 + T 100 -12.5 -3.85603 | opp_overlap 1164096, overlap 1164093 1164089 1164096 1164126 CTGCCGTGATAAATA ACCCGAATCACCTAC CAGA GTAAGTGATTCGGGC TGTTTGTTTACTGCC TERM 1297 1164096 - 1164127 + T 100 -16 -2.90639 | opp_overlap 1164096, overlap 1164095 1164093 1164089 1164126 TGCCGTGATAAATAA CCCGAATCACCTAC CAGA GTAAGTGATTCGGG CTGTTTGTTTACTGC TERM 1298 1164127 - 1164096 - T 100 -18.2 -4.06419 | opp_overlap 1164096 1164095 1164093 1164089 1164126 TGCCGTGATAAATAA CCCGAATCACCTAC CAGA GTAAGTGATTCGGG CTGTTTGTTTACTGC YPN_1005 1164633 - 1164184 - | hypothetical protein YPN_1006 1165550 - 1164636 - | hypothetical protein TERM 1299 1165694 - 1165672 - R 100 -13.4 -4.52703 | overlap 1165661 GAAAGCAGCATAAAA CTGCGCAGGA TTG CCCCGCGCAG TAGCAAATGATGGTA YPN_1007 1166614 - 1165745 - | putative thioredoxin TERM 1300 1166429 - 1166399 - G 71 -7.7 -4.07647 | gap 2 AGAGCGTAAACCAAA TTGCGACGC-C-ACC ATG GGTTGTGCATCGCAA TCGACACGGGCCAGA TERM 1301 1166562 - 1166529 - G 70 -3.2 -4.8048 | opp_overlap 1166547 CGTTCAGACCAAAAA TAGAACAACACAGG AACTGA CATGGATTGTTCTA TGGCTTGGTGCAGGT YPN_1008 1167467 - 1166691 - | short chain dehydrogenase TERM 1302 1167760 - 1167789 + rH 86 -5.7 -5.26316 | gap 1, opp_overlap 1167760, overlap 1167767 1167768 TGATTGGTAAGCGAA GGGATTACCGCACT TTT AGTGCGCTT-TCCC TTTTTTCTAGCCTGA TERM 1303 1167768 - 1167782 + rH 73 -10 -3.03344 | opp_overlap 1167760, overlap 1167767 1167760 AAGCGAAGGGATTAC CGCACT TTT AGTGCG CTTTCCCTTTTTTCT YPN_1009 1168492 - 1167854 - | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 YPN_1010 1168460 - 1169146 + | putative ABC transporter ATP-binding protein YbbA TERM 1304 1169365 - 1169388 + G 73 -10.2 -3.24422 | opp_overlap 1169358, overlap 1169364 1169363 GAAGCGAAGCAGCAG GGGCTGGCGG TTAG CCGCCAACTC TCATTTTTGACCATG TERM 1305 1169710 - 1169693 - g 76 -7.7 -4.38712 | gap 1 CTGATGTCGAGAAAA CCGG-TGC GGT GCAACCGG GTAGCCGTTTGACTT YPN_1011 1169143 - 1171572 + | permease TERM 1306 1171585 - 1171609 + F 84 -9.9 -3.78934 | overlap 1171598 TAGTGGATTTTATTC GCGGGCAGC AGCAGAG GCCGCCCGC TTCTTGTGCCCAGAA TERM 1307 1171645 - 1171627 - f 100 -16 -4.36914 | opp_overlap 1171627 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1308 1171627 - 1171645 + F 100 -16 -3.07307 | opp_overlap 1171627 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1012 1171758 - 1172216 + | transposase for the IS1541 insertion element TERM 1309 1172294 - 1172318 + T 100 -9.9 -4.52415 | opp_overlap 1172297, overlap 1172296 1172297 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTTATAACT TERM 1310 1172296 - 1172316 + T 100 -12.5 -3.86244 | opp_overlap 1172297, overlap 1172294 1172297 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTTATAA TERM 1311 1172297 - 1172315 + T 100 -16 -2.90662 | opp_overlap 1172297, overlap 1172296 1172294 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTATA TERM 1312 1172315 - 1172297 - T 100 -16 -4.8048 | opp_overlap 1172297 1172296 1172294 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTATA YPN_1013 1173390 - 1172326 - | phosphoribosylaminoimidazole carboxylase ATPase subunit YPN_1014 1173911 - 1173387 - | phosphoribosylaminoimidazole carboxylase catalytic subunit PurE YPN_1015 1174929 - 1174207 - | UDP-2,3-diacylglucosamine hydrolase TERM 1313 1174728 - 1174709 - G 71 -6.4 -4.36914 | opp_overlap 1174712, overlap 1174712 TTCCCGTGGATAAAA TAACAGGG CACC CCCTGTTG TTGGAGTGATTTCAG TERM 1314 1174725 - 1174712 - G 79 -8.1 -4.30995 | opp_overlap 1174712, overlap 1174709 CCGTGGATAAAATAA CAGGG CACC CCCTG TTGTTGGAGTGATTT TERM 1315 1174712 - 1174725 + g 70 -8.1 -3.67134 | opp_overlap 1174712 1174709 CCGTGGATAAAATAA CAGGG CACC CCCTG TTGTTGGAGTGATTT TERM 1316 1174884 - 1174868 - G 86 -9.4 -4.5538 | opp_overlap 1174868, overlap 1174861 ATAAAATGCAGAAAA CCGGCA GTGAT TGCCGG TTCCTGAACGCTGAG YPN_1016 1175434 - 1174940 - | peptidyl-prolyl cis-trans isomerase B (rotamase B) TERM 1317 1176583 - 1176597 + G 71 -7.8 -4.03413 | TCTGAAGCAGGCACG CGCTTC ACT GGAGCG TTTATATACCGCGCT TERM 1318 1176618 - 1176606 - g 70 -10.5 -2.87931 | TGGAGCGTTTATATA CCGCG CTG CGCGG TACTGATGCTAACGC cysS 1175645 - 1177030 + | cysteinyl-tRNA synthetase TERM 1319 1177196 - 1177226 + F 100 -11.3 -5.60993 | gap 1, opp_overlap 1177196 1177198, overlap 1177198 ATAGTACTAAAAAAA TTGCGGTT-CTGGT GTTT ACCAGTAACCGCGA TTTTTTTGTGCCCAG TERM 1320 1177226 - 1177196 - f 100 -9.1 -5.56568 | gap 1, opp_overlap 1177196 1177198, overlap 1177198 ATAGTACTAAAAAAA TTGCGGTT-CTGGT GTTT ACCAGTAACCGCGA TTTTTTTGTGCCCAG TERM 1321 1177198 - 1177224 + F 83 -11.7 -2.96801 | gap 1, opp_overlap 1177196 1177198, overlap 1177196 AGTACTAAAAAAATT GCGGTT-CTGGT GTTT ACCAGTAACCGC GATTTTTTTGTGCCC TERM 1322 1177224 - 1177198 - f 83 -11.7 -2.94304 | gap 1, opp_overlap 1177198 1177196, overlap 1177196 AGTACTAAAAAAATT GCGGTT-CTGGT GTTT ACCAGTAACCGC GATTTTTTTGTGCCC TERM 1323 1177264 - 1177246 - f 100 -16 -4.36914 | opp_overlap 1177246 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1324 1177246 - 1177264 + F 100 -16 -3.07307 | opp_overlap 1177246 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1018 1177377 - 1177835 + | transposase for the IS1541 insertion element TERM 1325 1177913 - 1177937 + T 100 -9.9 -4.46854 | opp_overlap 1177916, overlap 1177915 1177916 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTTCAATAG TERM 1326 1177915 - 1177935 + T 100 -12.5 -3.83566 | opp_overlap 1177916, overlap 1177913 1177916 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTTCAAT TERM 1327 1177934 - 1177916 - T 100 -16 -4.8048 | opp_overlap 1177916 1177915 1177913 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTCAA TERM 1328 1177916 - 1177934 + T 100 -16 -2.89055 | opp_overlap 1177916, overlap 1177915 1177913 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTCAA TERM 1329 1177953 - 1177967 + T 83 -11.4 -3.02263 | opp_overlap 1177952 TTTATTGTTCAATAG GCCAGC AAT GCTGGC TATTACAACGGCTAT YPN_1019 1178194 - 1177982 - | hypothetical protein YPN_1020 1179075 - 1178209 - | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase TERM 1330 1179417 - 1179401 - R 85 -7.2 -4.89567 | GCTTAAAATACAAAA CCCGCC ATTTA GACGGG TCAGGTAGTGATTTA YPN_1021 1180682 - 1180185 - | hypothetical protein YPN_1022 1180833 - 1180720 - | hypothetical protein TERM 1331 1180755 - 1180796 + g 70 -10.3 -2.91702 | opp_overlap 1180760, overlap 1180760 ATTCAGGGAGCCATA AAAAATGGCCGTAAGCTAA ATCA TTAACTTCCGGCCATTTTA ATATTTTATCGTGTT TERM 1332 1180791 - 1180760 - G 100 -12.4 -5.28176 | opp_overlap 1180760 1180755 GGGAGCCATAAAAAA TGGCCGTAAGCTAA ATCA TTAACTTCCGGCCA TTTTAATATTTTATC TERM 1333 1180760 - 1180791 + g 91 -10.2 -4.58236 | opp_overlap 1180760, overlap 1180755 GGGAGCCATAAAAAA TGGCCGTAAGCTAA ATCA TTAACTTCCGGCCA TTTTAATATTTTATC YPN_1023 1181385 - 1181239 - | phage integrase YPN_1024 1182335 - 1182937 + | CDP-alcohol phosphatidyltransferase YPN_1025 1182930 - 1183859 + | phosphatidate cytidylyltransferase YPN_1026 1183869 - 1184501 + | acyltransferase TERM 1334 1184542 - 1184560 + G 74 -9.6 -3.64716 | opp_overlap 1184532, overlap 1184540 1184545 AGGCATGTTCACCGC CAGCGATG AAA CATCGTTG TATTTTCGCCACTGG YPN_1027 1184498 - 1186261 + | hypothetical protein YPN_1028 1186254 - 1187573 + | dual specificity phosphatase TERM 1335 1187629 - 1187649 + G 79 -7.5 -4.58236 | TTTCGCCTTATTAAC GCTACCACC GCT GGTGCTGGC TTTTAATCTTTTGTA YPN_1029 1187555 - 1187956 + | hypothetical protein YPN_1030 1188053 - 1188358 + | membrane protein TERM 1336 1188540 - 1188557 + T 86 -7.7 -4.61231 | gap 1, opp_overlap 1188539 1188540, overlap 1188541 GCTGAAATCGAATAC CGGG-AGC AGG GCTTCCCG TTTTTGGGGGTCTAA YPN_1031 1189504 - 1188725 - | transposase/IS protein TERM 1337 1189423 - 1189437 + g 77 -11.4 -3.3506 | overlap 1189436 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_1032 1190526 - 1189504 - | transposase for insertion sequence IS100 TERM 1338 1190548 - 1190530 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_1033 1190620 - 1191513 + | LysR family transcriptional regulator TERM 1339 1191539 - 1191514 - T 100 -13.4 -3.15544 | opp_overlap 1191509 1191508 CGTTATTCGGATTAA CTGGCTTACG GATTAT CGTAAGCCAG ATGAAATTTGAGCGA YPN_1034 1192557 - 1191568 - | aldo/keto reductase TERM 1340 1191722 - 1191744 + g 78 -6.2 -4.82901 | opp_overlap 1191743 TGCAGTTTTGTGGTT CCGGGGATTG GCA CAATCCAAGG TTTTTGTGCCAACAA YPN_1035 1193434 - 1192583 - | aldo/keto reductase YPN_1036 1193607 - 1193750 + | hypothetical protein TERM 1341 1194731 - 1194717 - g 70 -3.4 -4.8066 | AAGACAATGCAAAAA CAGCCC GAT GCGCCG CTATTACTGGGGGCT YPN_1037 1193907 - 1195535 + | hypothetical protein YPN_1038 1197995 - 1195614 - | beta-glucosidase TERM 1342 1198122 - 1198135 + r 82 -2.3 -5.72254 | overlap 1198112 TAACGGGTTGGCATG GGGCC AGAC GGTTC TTTTTTATTGTTTAA YPN_1039 1198684 - 1198154 - | hypothetical protein YPN_1040 1200884 - 1198677 - | membrane protein TERM 1343 1200310 - 1200299 - G 80 -3 -5.36441 | TGTTGAGATAAAAAA TGTT GTCG AACA GTGAGAAAGAGACCG YPN_1041 1201081 - 1200920 - | hypothetical protein TERM 1344 1202518 - 1202539 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1042 1201336 - 1202544 + | transposase for the IS285 insertion element YPN_1043 1202623 - 1202931 + | hypothetical protein YPN_1044 1203527 - 1202946 - | hypothetical protein TERM 1345 1203796 - 1203808 + r 95 -3.4 -6.28631 | TTGTGGAAATTATCT TGCT GACTG AGCA TTTTTTTTTAATTTA TERM 1346 1203870 - 1203849 - R 91 -6.5 -5.56264 | opp_overlap 1203854, overlap 1203852 GTGAAATAGAAAAAA TAACCCCTC AGAA GAGGGGCTG AGGTTATTGACAAAG TERM 1347 1203867 - 1203852 - R 100 -10.4 -4.8277 | opp_overlap 1203854, overlap 1203849 AAATAGAAAAAATAA CCCCTC AGAA GAGGGG CTGAGGTTATTGACA TERM 1348 1203946 - 1203972 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 1203935, overlap 1203941 1203947 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1349 1203947 - 1203973 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 1203935, overlap 1203941 1203946 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_1045 1205978 - 1204062 - | putative autotransporter protein TERM 1350 1205426 - 1205449 + g 82 -11.8 -3.53012 | gap 1, opp_overlap 1205408 1205425 1205443 GAAGCGGCACGATAC TCGTGCCCTTC CAG GAAGGGC-CGA TTTCGACCAGACCCG TERM 1351 1206061 - 1206039 - H 78 -9.8 -3.54926 | opp_overlap 1206043, overlap 1206037 CATTGTAAAAAGAGA CACACCGCCC TTG GGACGGTTTG AACGTTATGTTTATC YPN_1046 1206787 - 1207026 + | hypothetical protein YPN_1047 1207065 - 1207316 + | hypothetical protein TERM 1352 1207852 - 1207833 - g 73 -10.8 -3.25823 | opp_overlap 1207827 1207824 1207822 CGTTTCTGATATCAA GCACACTT TTTC AAGTGTGC TTGAACATATTTATA YPN_1048 1207340 - 1207912 + | hypothetical protein YPN_1049 1208325 - 1207924 - | membrane protein YPN_1051 1208998 - 1208558 - | hypothetical protein TERM 1353 1208818 - 1208796 - GR 71 -4.8 -4.58859 | AAATAGAACAATAAA GGGACTGCAA ATA TTACAAACCC AACCTTCCATGAAAA YPN_1052 1209155 - 1208952 - | hypothetical protein YPN_1053 1209808 - 1209227 - | hypothetical protein TERM 1354 1209570 - 1209556 - G 100 -5.7 -5.76949 | GACTTCCAAAAAAAA CCGAT GTGGG ATCGG TACAGGAAAAAATAG TERM 1355 1210019 - 1210007 - H 78 -4.1 -5.24551 | overlap 1209997 TTAAATGAAGAAAAA CTTCA TTA CGAAG AAGATGACCAGAGCT TERM 1356 1210032 - 1210056 + H 73 -5.7 -4.44355 | opp_overlap 1210032, overlap 1210034 AAGAAGATGACCAGA GCTGAATGGGT ATG AGCCATTCAAC TTATTTTTAGAATTA YPN_1054 1210481 - 1210726 + | DNA-binding protein TERM 1357 1210767 - 1210793 + T 95 -8.1 -5.16237 | gap 2 AAACGCGAGATTGCT GCCCCACAATGGT GTG ACC-T-GTGGGGC TTTTTTGATCCCCTT YPN_1055 1213302 - 1210939 - | hypothetical protein TERM 1358 1211614 - 1211593 - G 74 -7.2 -4.15114 | AATATTAAAGAATAA CGGTGCGG CGGCAT CGGCACCG ACAAAGGCGCTGTTG TERM 1359 1213325 - 1213348 + H 88 -10.9 -3.78934 | overlap 1213326 CGGCTGAAATCCGAT AGCGCCCCG GCGATG CGGGGCGCG TTGTTGTGCCCAGAA TERM 1360 1213326 - 1213347 + H 100 -14.4 -2.87146 | overlap 1213325 GGCTGAAATCCGATA GCGCCCCG GCGATG CGGGGCGC GTTGTTGTGCCCAGA TERM 1361 1213384 - 1213366 - H 100 -16 -4.36914 | opp_overlap 1213366 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1362 1213366 - 1213384 + H 100 -16 -3.07307 | opp_overlap 1213366 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1056 1213497 - 1213955 + | transposase for the IS1541 insertion element TERM 1363 1214029 - 1214061 + T 100 -11.3 -4.69464 | opp_overlap 1214036, overlap 1214033 1214035 1214036 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTCAGCTATTTT TERM 1364 1214033 - 1214057 + T 100 -9.9 -4.87389 | opp_overlap 1214036, overlap 1214029 1214035 1214036 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTTCAGCTA TERM 1365 1214035 - 1214055 + T 100 -12.5 -4.04587 | opp_overlap 1214036, overlap 1214033 1214029 1214036 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTCAGC TERM 1366 1214054 - 1214036 - T 100 -16 -4.8048 | opp_overlap 1214035 1214033 1214029 1214036 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTCAG TERM 1367 1214036 - 1214054 + T 100 -16 -3.01668 | opp_overlap 1214036, overlap 1214035 1214033 1214029 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTCAG YPN_1057 1220048 - 1214070 - | hypothetical protein TERM 1368 1217973 - 1217990 + g 71 -5.5 -4.56597 | opp_overlap 1217976, overlap 1217972 GGCTCGGGTGGGCAG GAAGGAG ACAT CCCCTTC TTTTTCCACCAGGAA TERM 1369 1218809 - 1218827 + g 79 -11 -3.61894 | CGGCCTCATTGAGGG TCAGCGCC AGC GGCGTTGA TTGTTGCAGCAGATT TERM 1370 1220400 - 1220422 + r 77 -10.6 -3.14344 | GCTATGGCAGAGTCA TGCCCTGAGA GCG TTTCAGGGCG TTGGTACAGCAAGTA YPN_1058 1221009 - 1220455 - | hypothetical protein YPN_1059 1221191 - 1221388 + | hypothetical protein YPN_1060 1222491 - 1221637 - | hypothetical protein YPN_1061 1222829 - 1224355 + | aldehyde dehydrogenase TERM 1371 1225211 - 1225229 + G 70 -11 -2.5655 | overlap 1225210 GCTGCCAAGTGATCA TCCCCTCA ACT TGGGGGGA ATTGGTGTCACTGGC TERM 1372 1225467 - 1225491 + G 76 -12.9 -2.70932 | overlap 1225469 GAAGGGCTGGCAGGT TATCGCACTGC TTG GCAGGGCGATA TCATTGAGGCCAAAG TERM 1373 1225469 - 1225489 + G 73 -11.1 -2.90075 | overlap 1225467 AGGGCTGGCAGGTTA TCGCACTGC TTG GCAGGGCGA TATCATTGAGGCCAA YPN_1062 1224369 - 1226315 + | thiamine pyrophosphate-dependent protein YPN_1063 1226609 - 1227118 + | hypothetical protein YPN_1064 1227085 - 1227594 + | myo-inositol 2-dehydrogenase TERM 1374 1227943 - 1227958 + G 70 -3.2 -4.84311 | gap 1, opp_overlap 1227936, overlap 1227943 TGGAAAATGCCATCA CCC-GTG GCG CGCAGGG TTTTATTGTCTCGCC YPN_1065 1227720 - 1228649 + | sugar-binding periplasmic protein YPN_1066 1228698 - 1230245 + | sugar transport ATP-binding protein TERM 1375 1230336 - 1230347 + G 74 -2.2 -5.1244 | overlap 1230329 CTTTTTTTGAACGCT TCGG CGTC CTGA TTTTTATGTTCCTGC YPN_1067 1230257 - 1231285 + | sugar transport system permease protein YPN_1068 1231309 - 1232442 + | hypothetical protein TERM 1376 1232816 - 1232803 - g 74 -3.7 -5.05601 | GACCACAGATAAAAA GCGGC TCAC GGCGC TGGTACTCCTGAGTA YPN_1069 1232474 - 1234444 + | carbohydrate kinase TERM 1377 1235311 - 1235300 - g 71 -5.8 -4.31329 | TCAAAAACCGTAAAA CCAG TTTT CTGG ACGCGGTGTTGAGTG YPN_1070 1234459 - 1235517 + | hypothetical protein TERM 1378 1235657 - 1235681 + G 70 -9.9 -3.1944 | opp_overlap 1235640, overlap 1235650 AAGGGCAGCCACTGA CGCTCACCGCG GTT CCCGATGAGCG TTGCCTGGTTTTGAT YPN_1071 1235527 - 1236342 + | hypothetical protein TERM 1379 1236415 - 1236426 + T 75 -3 -5.24551 | opp_overlap 1236415 TTCATTGTAAATAAC CAAA TTTC TTTG TTTTTATTCGTTTGA YPN_1072 1236847 - 1236545 - | hypothetical protein TERM 1380 1237264 - 1237286 + G 70 -10.6 -2.94695 | overlap 1237266 1237268 GTTTGCGGTTTCACC TAGAGCGCCA GAC TGGCGGTCTA TCATTATCTATTGAG YPN_1073 1236912 - 1238702 + | ABC transport protein YPN_1074 1239005 - 1238718 - | hypothetical protein YPN_1075 1239448 - 1239642 + | hypothetical protein YPN_1076 1239947 - 1239660 - | hypothetical protein YPN_1077 1240878 - 1240024 - | hypothetical protein TERM 1381 1241521 - 1241497 - g 91 -2.9 -5.78622 | overlap 1241499 CTATCGTAAAAAAAA TCTTCACATCC TTA GGATTTAAAAA AGAGATTAAATTCTA TERM 1382 1241621 - 1241642 + G 81 -5.7 -5.05505 | opp_overlap 1241611 1241621, overlap 1241626 CAAACGTCTGGATAA GACCCCCGC AGAA GCGGATGTC TTTTTGATTTGTGAT YPN_1078 1241412 - 1242029 + | LuxR family regulatory proteins YPN_1079 1242830 - 1242339 - | hypothetical protein YPN_1080 1243315 - 1243082 - | hypothetical protein TERM 1383 1243327 - 1243344 + r 100 -10.5 -5.28176 | opp_overlap 1243327 CCATATCTTTAAAAA CCCGCCT TACT GGGCGGG TTTTTTATGGGTAGC TERM 1384 1243344 - 1243327 - R 100 -9.8 -4.61231 | opp_overlap 1243327 CCATATCTTTAAAAA CCCGCC TTACTG GGCGGG TTTTTTATGGGTAGC YPN_1081 1244112 - 1243729 - | membrane protein tatE 1244679 - 1244936 + | twin argininte translocase protein A TERM 1385 1245025 - 1245045 + T 100 -9.7 -5.1675 | opp_overlap 1245025 GGCTGATAAAAAAAA CGGATCTCC AAT GGAAATCCG TTTTTTGGTGGCTGC TERM 1386 1245045 - 1245025 - T 100 -11.9 -5.93809 | opp_overlap 1245025 GGCTGATAAAAAAAA CGGATCTCC AAT GGAAATCCG TTTTTTGGTGGCTGC TERM 1387 1245083 - 1245101 + T 74 -9.6 -3.38046 | opp_overlap 1245083, overlap 1245081 1245084 1245088 AGGTGTAATAAGTTA TTTCAGCC ATG GGCTGAAG TCTTTAGCCTACCGC TERM 1388 1245084 - 1245100 + T 76 -10.9 -2.62613 | opp_overlap 1245083, overlap 1245083 1245081 1245088 GGTGTAATAAGTTAT TTCAGCC ATG GGCTGAA GTCTTTAGCCTACCG YPN_1083 1246082 - 1245117 - | lipoyl synthase TERM 1389 1246109 - 1246121 + r 80 -6.3 -4.90013 | TTCCAGTTCTGAATC TCTCA ACT TGAGA TTTTTCATTAAATTC lipB 1246976 - 1246275 - | lipoyltransferase YPN_1085 1247451 - 1247188 - | hypothetical protein TERM 1390 1247545 - 1247516 - R 72 -6.3 -4.3739 | opp_overlap 1247517, overlap 1247522 TATCCGGCTATAAAA TCACAACTCCCGC CGGA GCGGGAGTGACGT ACTGTTCGCCAGATA TERM 1391 1247539 - 1247522 - R 100 -12.7 -3.72405 | opp_overlap 1247517, overlap 1247516 GCTATAAAATCACAA CTCCCGC CGGA GCGGGAG TGACGTACTGTTCGC YPN_1086 1248851 - 1247649 - | D-alanyl-D-alanine carboxypeptidase fraction A TERM 1392 1249173 - 1249210 + r 100 -14.3 -5.14163 | opp_overlap 1249167 1249170 1249184 TCACCCAAACAGTTT TAACCGTAACACCCTGT TTGC ACAGGCGGTTACGGTTA TTTTTATTAGTCAGT YPN_1087 1250336 - 1249254 - | rare lipoprotein A YPN_1088 1251458 - 1250346 - | cell wall shape-determining protein TERM 1393 1250958 - 1250948 - G 70 -8.2 -3.76767 | overlap 1250946 1250949 GGAACAACACAAACA GGCC GGA GGCC GCAACCAGAATTGAT YPN_1089 1253538 - 1251643 - | penicillin-binding protein 2 TERM 1394 1251840 - 1251817 - G 73 -8.9 -3.78022 | CTCATAGGGAGCAAA CGCAACCAT TAACTT ATGGTCGCG CAGGTGTTCTGCCAC TERM 1395 1252463 - 1252489 + g 72 -3.6 -4.77036 | GAACCGGGCAGTTGC CACCAACCAG GATCGAA CAGGCTGGTG TTTTTGGTGATAACC TERM 1396 1253159 - 1253172 + g 86 -8.1 -4.62471 | GAGGTAAAGCGACGT GAGCG TTTG CGCTC TTTTTCAAAGTTAGC YPN_1090 1254090 - 1253620 - | SPOUT methyltransferase superfamily protein YPN_1091 1254411 - 1254094 - | hypothetical protein nadD 1255297 - 1254635 - | nicotinic acid mononucleotide adenylyltransferase holA 1256321 - 1255287 - | DNA polymerase III subunit delta TERM 1397 1256293 - 1256266 - G 77 -9 -3.98649 | opp_overlap 1256263, overlap 1256267 CACAATAGATAACAA GCGCGTAGCCCC TCAT GGAGCTGCGCGA CAAGTTGTTCAGGGT TERM 1398 1256292 - 1256267 - G 78 -12.5 -2.98105 | opp_overlap 1256263, overlap 1256266 ACAATAGATAACAAG CGCGTAGCCCC TCAT GGAGCTGCGCG ACAAGTTGTTCAGGG YPN_1094 1256941 - 1256318 - | LPS-assembly lipoprotein RplB TERM 1399 1256914 - 1256880 - G 71 -6.3 -4.34402 | CCCCGCAGATTAAAA CCGCAGCCAGCGGTG ACCAG CACCGCCAACCCCAG CAACAACGTCAGAAT leuS 1259538 - 1256956 - | leucyl-tRNA synthetase TERM 1400 1257613 - 1257630 + g 70 -3.4 -4.85599 | opp_overlap 1257612 CATCATAAACAGACG TACGGT ATCCGC GCCGTA TTTTTCTACCATGAC YPN_1096 1259799 - 1260281 + | hypothetical protein TERM 1401 1260410 - 1260379 - T 87 -5 -5.49579 | overlap 1260380 1260383 TCATAAAAAATAAAA GTGACCTCCCCTAC AAAC GCAGGGGAGGAGAA CGAATTAATGCAAGA TERM 1402 1260409 - 1260380 - T 75 -8.5 -3.87307 | overlap 1260379 1260383 CATAAAAAATAAAAG TGACCTCCCCTAC AAAC GCAGGGGAGGAGA ACGAATTAATGCAAG TERM 1403 1260406 - 1260383 - T 100 -14.6 -2.95933 | overlap 1260380 1260379 AAAAAATAAAAGTGA CCTCCCCTAC AAAC GCAGGGGAGG AGAACGAATTAATGC YPN_1097 1261140 - 1260415 - | glutamate/aspartate transport ATP-binding protein YPN_1098 1261814 - 1261140 - | glutamate/aspartate transport system permease YPN_1099 1262554 - 1261814 - | glutamate/aspartate transport system permease TERM 1404 1262663 - 1262637 - R 100 -15.2 -5.60993 | opp_overlap 1262634 1262637 GGGTTGACAAAAAAA TGCGGGGTGG GGAACGA CCACCCCGCA TCCTGTCTACCAATA TERM 1405 1262637 - 1262663 + r 100 -15.2 -2.69468 | opp_overlap 1262637, overlap 1262634 GGGTTGACAAAAAAA TGCGGGGTGG GGAACGA CCACCCCGCA TCCTGTCTACCAATA TERM 1406 1262697 - 1262715 + r 77 -10.2 -3.07102 | overlap 1262694 CATCATCAATCGGTA GGGCAGGT ATG ACCCGCCC TGATTATTATTGTTA YPN_1100 1263645 - 1262728 - | glutamate and aspartate transporter subunit TERM 1407 1263189 - 1263211 + g 91 -11.4 -4.2131 | opp_overlap 1263189 1263188, overlap 1263202 CTTTACCTGCCAAAT CTTTGAAGTC TTT GACTTCAGAG TCTTTTTTGGTGAGT TERM 1408 1263202 - 1263213 + g 80 -4.4 -5.1675 | opp_overlap 1263189 1263188, overlap 1263189 ATCTTTGAAGTCTTT GACT TCAG AGTC TTTTTTGGTGAGTAA TERM 1409 1263507 - 1263523 + g 73 -5.1 -4.7416 | opp_overlap 1263510 ATTCACGGTGGCCCA CAACGAT AAC ACCGTTG TTTTTAACCTTTTGC TERM 1410 1264137 - 1264117 - R 79 -11.2 -3.11178 | GAACTAAGCGGAATA TAGCCCTG GAGTG CAGGGCTA TCAGGTATAAATAGA TERM 1411 1264191 - 1264179 - R 74 -4.1 -4.97666 | AACAGATGAGAAAAA CAGAC GTT ATCTG TGACTGGAAGCACTA lnt 1265996 - 1264410 - | apolipoprotein N-acyltransferase TERM 1412 1265922 - 1265904 - GR 86 -5.9 -5.17353 | overlap 1265906 1265907 ACAGGCACCAAAAAA TAGCGCC AGTAG GGCGCGA ACCCACTGGCGTTGG TERM 1413 1265920 - 1265906 - GR 79 -8.5 -4.2131 | overlap 1265904 1265907 AGGCACCAAAAAATA GCGCC AGTAG GGCGC GAACCCACTGGCGTT TERM 1414 1265933 - 1265907 - GR 84 -11.6 -3.11701 | overlap 1265906 1265904 GGCACCAAAAAATAG CGCCAGTAGG GCGCGAA CCCACTGGCG TTGGAGGAATAGAGC YPN_1102 1266843 - 1265965 - | membrane protein TERM 1415 1266693 - 1266703 + gH 73 -5.4 -4.64676 | overlap 1266690 CTCGGGTATCGGGAT CGAT CAG ATCG TTTTGTTCAGAATCA YPN_1103 1266829 - 1266981 + | hypothetical protein YPN_1104 1267434 - 1266961 - | putative metalloprotease YPN_1105 1268504 - 1267431 - | hypothetical protein TERM 1416 1268757 - 1268734 - R 86 -6.7 -5.07652 | opp_overlap 1268736, overlap 1268736 CCCGCTAAAATAAAA CAGGCACTG ACAATG CAGTGCCTC GTTACGCGGGCGGGA TERM 1417 1268755 - 1268736 - R 85 -9.3 -4.16397 | opp_overlap 1268736, overlap 1268734 CGCTAAAATAAAACA GGCACTG ACAATG CAGTGCC TCGTTACGCGGGCGG YPN_1106 1270270 - 1268831 - | tRNA-thiotransferase TERM 1418 1270467 - 1270452 - H 70 -5.4 -4.52589 | opp_overlap 1270440, overlap 1270453 TGCGGTTAGACAAAA CCTTGC TAAT GCAAGA AGTACATTCACTTTT ubiF 1270497 - 1271678 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 1419 1271856 - 1271880 + T 100 -16.5 -2.73364 | overlap 1271854 TACTGCCTTTCTGCC TGAGCCCGGTA TTC TGCCGGGCTCA TCATTCCGCTGACGG TERM 1420 1272045 - 1272060 + T 73 -6 -4.51196 | opp_overlap 1272045, overlap 1272040 ATGAAAAAGCAAAAA GCCCGC CGAA GCGAGC TTTTCTAAATTTGGC TERM 1421 1272060 - 1272045 - T 100 -8.2 -5.1971 | opp_overlap 1272045 1272040 ATGAAAAAGCAAAAA GCCCGC CGAA GCGAGC TTTTCTAAATTTGGC TERM 1422 1272272 - 1272310 + T 79 -11.7 -2.53911 | opp_overlap 1272275 TGTATGGCTGGGATA CCAGGATTCGAACCTGG GAATG CCAGGATCAAAACCTGG TGCCTTACCGCTTGG TERM 1423 1272442 - 1272480 + T 79 -11.7 -2.53911 | opp_overlap 1272432 1272445 AAGATGGCTGGGATA CCAGGATTCGAACCTGG GAATG CCAGGATCAAAACCTGG TGCCTTACCGCTTGG TERM 1424 1272953 - 1272977 + T 79 -11.4 -2.50385 | opp_overlap 1272953, overlap 1272952 1272948 1272956 GGTGACGTAAAAAAA CAAGGCCGCC CCAGA GGCGACCTTG CTATCTATTCTCTAT TERM 1425 1272977 - 1272953 - T 100 -14.3 -5.47218 | opp_overlap 1272953 1272952 1272948 1272956 GGTGACGTAAAAAAA CAAGGCCGCCC CAG AGGCGACCTTG CTATCTATTCTCTAT TERM 1426 1273130 - 1273147 + T 78 -9.8 -3.53189 | TTGTCAGCAGTCGGC GCGGGG GATTAA CCCCGC TTATCGTGTTCAATT asnB 1274825 - 1273161 - | asparagine synthetase B YPN_1110 1275932 - 1275180 - | UMP phosphatase TERM 1427 1275660 - 1275674 + g 80 -4.2 -5.06451 | AACTAAAGCACCCTC GCCAAT AAC ATAGGC TTTTTTGCCATCCTG YPN_1111 1277270 - 1276005 - | N-acetylglucosamine regulatory protein nagA 1278393 - 1277248 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1428 1278021 - 1278031 + g 80 -2.4 -5.42862 | GGTGCAAGCCGAGCG CCTG ATG CTGG TTTTTTTGCAGATAT nagB 1279213 - 1278413 - | glucosamine-6-phosphate deaminase YPN_1114 1279613 - 1281646 + | pts system, N-acetylglucosamine-specific IIABC component TERM 1429 1281760 - 1281737 - f 100 -15.4 -3.4052 | opp_overlap 1281737 TTTTAATCGAACCAA CGGGAAGAGA GCGA TCTCTTCCCG TTTTTTTGTGCCCAG TERM 1430 1281737 - 1281760 + F 100 -15.4 -5.60993 | opp_overlap 1281737 TTTTAATCGAACCAA CGGGAAGAGA GCGA TCTCTTCCCG TTTTTTTGTGCCCAG TERM 1431 1281780 - 1281798 + F 100 -16 -3.07307 | opp_overlap 1281780 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1432 1281798 - 1281780 - f 100 -16 -4.36914 | opp_overlap 1281780 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1115 1281911 - 1282369 + | transposase for the IS1541 insertion element TERM 1433 1282439 - 1282478 + F 100 -9.4 -4.88918 | gap 1, opp_overlap 1282450, overlap 1282443 1282447 1282449 1282450 AGAGCCTTATAGGCG CATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTAT-TG TTTTGTTTGCCGTAA TERM 1434 1282443 - 1282475 + F 100 -11.3 -4.54026 | opp_overlap 1282450, overlap 1282439 1282447 1282449 1282450 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTGTTTTGTTTGCCG TERM 1435 1282447 - 1282471 + F 100 -9.9 -4.78266 | opp_overlap 1282450, overlap 1282443 1282439 1282449 1282450 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTTTTGTTT TERM 1436 1282449 - 1282469 + F 100 -12.5 -3.95309 | opp_overlap 1282450, overlap 1282447 1282443 1282439 1282450 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTTTTGT TERM 1437 1282468 - 1282450 - f 100 -16 -4.8048 | opp_overlap 1282449 1282447 1282443 1282439 1282450 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTTTG TERM 1438 1282450 - 1282468 + F 100 -16 -2.94745 | opp_overlap 1282450, overlap 1282449 1282447 1282443 1282439 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTTTTG YPN_1116 1282571 - 1284238 + | glutaminyl-tRNA synthetase TERM 1439 1284261 - 1284280 + F 100 -10.7 -5.43414 | opp_overlap 1284259 CGCTCAGATTCAATT GGCGTGG CACAGT CCACGCC TTTTTTGTCTCTGAT TERM 1440 1285320 - 1285302 - g 71 -7.4 -4.11623 | CAGCACCAAATGAAA TTGGCTTC AGT GACGCCAA AACCCGCTGGGACGA YPN_1117 1284944 - 1286365 + | hypothetical protein YPN_1118 1286693 - 1287316 + | hypothetical protein TERM 1441 1288868 - 1288898 + GT 76 -10.4 -3.05844 | overlap 1288866 GAAGAGTGATAAACC CTGGCCGGGTGTAC AGG GTATCTCCGGTCAG TCTTGGAATGAAACG YPN_1119 1287255 - 1289357 + | Beta-N-acetylhexosaminidase TERM 1442 1289468 - 1289486 + T 100 -11.7 -5.40072 | TGAGTTGATCGTATT TCCCCGG CTGGT CCGGGGA TTTTTTTGCCCGAAA fur 1290244 - 1289798 - | ferric uptake regulator TERM 1443 1290596 - 1290560 - R 71 -9.6 -3.06492 | opp_overlap 1290560 1290564, overlap 1290564 CCAGTGACTGGAACA GAAACGCTCTGC TGTGAATACTATC GCAGAGCGTTTC TTGTTGCGGGGAGAT TERM 1444 1290560 - 1290596 + r 100 -12.4 -3.61517 | opp_overlap 1290560 1290564, overlap 1290564 CCAGTGACTGGAACA GAAACGCTCTGCTGTG AATAC TATCGCAGAGCGTTTC TTGTTGCGGGGAGAT TERM 1445 1290564 - 1290592 + r 78 -7.4 -4.44667 | opp_overlap 1290560 1290564, overlap 1290560 TGACTGGAACAGAAA CGCTCTGCTGTG AATAC TATCGCAGAGCG TTTCTTGTTGCGGGG YPN_1121 1291138 - 1290611 - | flavodoxin FldA TERM 1446 1291543 - 1291500 - R 73 -6 -4.43859 | opp_overlap 1291507 1291538, overlap 1291507 CATAACGGCATAAAA GTAATAACAGCGTGGCGTAA TCAC TTACACCACGCTGTTGTGGT AACCGACAGGGTTAG TERM 1447 1291536 - 1291507 - R 100 -17.3 -3.9978 | opp_overlap 1291507, overlap 1291500 GCATAAAAGTAATAA CAGCGTGGCGTAA TCAC TTACACCACGCTG TTGTGGTAACCGACA TERM 1448 1291507 - 1291536 + r 100 -15.1 -3.40403 | opp_overlap 1291500 1291507 GCATAAAAGTAATAA CAGCGTGGCGTAA TCAC TTACACCACGCTG TTGTGGTAACCGACA YPN_1122 1291842 - 1291555 - | LexA regulated protein YPN_1123 1292941 - 1292174 - | hypothetical protein TERM 1449 1293923 - 1293936 + r 78 -9.5 -3.737 | opp_overlap 1293921 1293918 TCTTGATTAACTATT GGGGC GAAC GCCCC TTTCGTAGAAGGTTG YPN_1124 1294251 - 1294066 - | integrase YPN_1125 1294597 - 1294334 - | IS1400 transposase A YPN_1126 1295128 - 1294646 - | phage family integrase YPN_1127 1295554 - 1295144 - | IS100 transposase YPN_1128 1295927 - 1295460 - | ATP-binding protein TERM 1450 1295843 - 1295857 + gr 86 -11.4 -3.3506 | overlap 1295856 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_1129 1296946 - 1295924 - | transposase for insertion sequence IS100 TERM 1451 1296968 - 1296950 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_1130 1297036 - 1297770 + | hypothetical protein TERM 1452 1297800 - 1297781 - T 91 -7.2 -5.28176 | overlap 1297788 1297794 1297797 GGTAGGGATAAAAAA CAGATACC CGAA AGTATCTG TCAGACTGCTGACAA TERM 1453 1297889 - 1297863 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1297872, overlap 1297864 1297879 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1454 1297890 - 1297864 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1297872, overlap 1297863 1297879 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT proX 1299004 - 1298000 - | glycine betaine transporter periplasmic subunit TERM 1455 1298202 - 1298215 + g 80 -2.3 -5.4505 | overlap 1298189 TTGGCGGCTGCCGGA TTGGC TTCA GCCCA TTTTTTGTTCGCCAC YPN_1132 1300218 - 1299052 - | glycine betaine transporter membrane protein YPN_1133 1301410 - 1300211 - | glycine betaine/L-proline transport ATP-binding protein TERM 1456 1300479 - 1300490 + g 71 -5.8 -4.30576 | opp_overlap 1300479 CGTTCCAGCACATAA CCGT AATC ACGG TTTTCATCCTGAAGC TERM 1457 1302004 - 1302020 + r 80 -3.5 -5.37043 | GGCTAACTGCCTATT GGGGCTG AGT CTCCCCC TTTTTTATCTAGAAT nrdF 1303057 - 1302086 - | ribonucleotide-diphosphate reductase subunit beta YPN_1135 1305332 - 1303182 - | ribonucleotide-diphosphate reductase subunit alpha TERM 1458 1303893 - 1303880 - G 81 -5.9 -5.03314 | CCGAGCCGTAAAAAA GACGC TCCC GCGCC AGATAACCGTGCAGG nrdI 1305796 - 1305314 - | ribonucleotide reductase stimulatory protein YPN_1137 1305968 - 1305732 - | hypothetical protein TERM 1459 1306785 - 1306760 - g 90 -9 -4.63527 | gap 1, overlap 1306761 1306762 GCATCAGTTCAAAAA GC-GCCCGTGC AAAAA GCACAGGCAGC GAAAAAGCACCATAA YPN_1138 1306472 - 1306837 + | acid shock protein precursor TERM 1460 1306877 - 1306896 + F 100 -9.3 -5.63504 | opp_overlap 1306879 CAGGTTAATCCCAAT CACCCAC TTAATT GTGGGTG TTTTTTTATAAGCTT YPN_1139 1307315 - 1307650 + | hypothetical protein YPN_1140 1308197 - 1307748 - | hypothetical protein TERM 1461 1308065 - 1308083 + g 74 -2.4 -5.10933 | opp_overlap 1308065, overlap 1308066 CCATCTCTTGCAACA TCGATTCA ATA TAAATCGG TTTTATTTTCAGTAG YPN_1141 1308700 - 1308362 - | hypothetical protein YPN_1142 1309208 - 1309420 + | cold shock protein TERM 1462 1309466 - 1309483 + F 100 -9.1 -6.25741 | opp_overlap 1309465 1309466 AAATAGATTTAGAAG CCTCGTC TTTT GACGGGG TTTTTTTTATTATTT TERM 1463 1309847 - 1309867 + F 72 -6.1 -4.35644 | opp_overlap 1309839 1309847 1309851, overlap 1309844 1309848 TAATAATCAAGCCAA TCAATAGCC TGG GGCTTTTGG TTCTTTTCTACTACT TERM 1464 1310263 - 1310274 + G 78 -2.2 -5.36441 | CCTTGGTGGCAACTG CGTT ATTG AGCG TTTTTTCTGTCCCAG TERM 1465 1311291 - 1311278 - g 90 -8.1 -5.05601 | CACCAGAGAGAAAAA TGGCC TACC GGCCA AGATAACGCTTTGGT YPN_1143 1310220 - 1311797 + | solute-binding protein YPN_1144 1311782 - 1312765 + | membrane protein TERM 1466 1313186 - 1313199 + G 70 -8.1 -3.69605 | TAGCATTAACCCACT GGCCA AAGC TGGCC TTGATTTTACGTGCC YPN_1145 1312762 - 1313568 + | binding-protein-dependent transport protein YPN_1146 1313568 - 1314374 + | transport ATPase YPN_1147 1314367 - 1315032 + | transport ATPase YPN_1148 1315580 - 1315404 - | hypothetical protein ureA 1316230 - 1316532 + | urease subunit gamma ureB 1316492 - 1317019 + | urease subunit beta TERM 1467 1317723 - 1317735 + G 71 -10.5 -3.14211 | opp_overlap 1317721, overlap 1317731 GAAAGGTAATTCATA CGGGC GCG GCCCG TTGCTGGAACAGGCT ureC 1317109 - 1318827 + | urease subunit alpha ureE 1319123 - 1319818 + | urease accessory protein UreE YPN_1153 1319840 - 1320526 + | urease accessory protein YPN_1154 1320653 - 1321315 + | urease accessory protein TERM 1468 1321704 - 1321684 - g 71 -6.2 -4.431 | overlap 1321698 CAGTCAGCCACAAAA GTTCACAT GATGA ATGCGAAC TACGCCTCGCAGATC YPN_1155 1321312 - 1322145 + | hypothetical protein YPN_1156 1322171 - 1322278 + | urease accessory protein TERM 1469 1322341 - 1322362 + F 84 -10.1 -3.86346 | opp_overlap 1322342 1322344, overlap 1322342 1322344 GTCAGTCTATTGAAT AGAGGCTGG GTAC CCAGCCTCG TTTATCAGCCAGTGA TERM 1470 1322361 - 1322342 - f 100 -13.6 -3.09327 | opp_overlap 1322342 1322341 1322344, overlap 1322344 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 1471 1322342 - 1322361 + F 100 -13.6 -2.91593 | opp_overlap 1322342 1322344, overlap 1322341 1322344 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 1472 1322344 - 1322359 + F 76 -10.4 -3.00946 | opp_overlap 1322342 1322344, overlap 1322342 1322341 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 1473 1322359 - 1322344 - f 77 -10.4 -3.10522 | opp_overlap 1322344 1322342 1322341, overlap 1322342 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 1474 1322580 - 1322604 + G 70 -4.3 -4.72986 | opp_overlap 1322583 1322586 TCAGGTAATGTTTCA GAATAACCC ATTGACC GGGCTATTC TTTTTCATCGCAATA YPN_1157 1322470 - 1323462 + | urea transporter TERM 1475 1323570 - 1323538 - f 73 -10 -2.93853 | gap 1, overlap 1323535 ATAGACCTCAAATTA TTGGCGTTATCG-TG TTGT CAGCGATAACGCCAG GTCAGAACGGGTAGG YPN_1158 1323611 - 1324669 + | nickel transport protein TERM 1476 1324790 - 1324749 - T 91 -10.3 -4.20918 | opp_overlap 1324753, overlap 1324751 1324753 GGGAAGGCTAACAAA TAGAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTTTT TTTTACAGGTTACAT TERM 1477 1324788 - 1324751 - T 100 -12.9 -3.70139 | opp_overlap 1324753, overlap 1324749 1324753 GAAGGCTAACAAATA GAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTT TTTTTTACAGGTTAC TERM 1478 1324786 - 1324753 - T 100 -15.5 -3.4214 | opp_overlap 1324753, overlap 1324751 1324749 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTTACAGGTT TERM 1479 1324753 - 1324786 + T 100 -15.5 -5.77853 | opp_overlap 1324751 1324749 1324753 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTTACAGGTT hdeB 1325167 - 1324838 - | acid-resistance protein TERM 1480 1326689 - 1326673 - g 71 -6.5 -4.13767 | overlap 1326676 GTTGCCACGCTAAAA TTAGCCG GTG CGGCGAA GGCAAAATATATTAT YPN_1160 1325785 - 1326960 + | voltage-gated potassium channel TERM 1481 1327021 - 1327000 - T 75 -7.3 -4.34402 | opp_overlap 1327000 GTGTTTATATCAAAA CACCCTC GGTTAAGT GAGGGTG TTTTTTTTGTCACGA TERM 1482 1327000 - 1327021 + T 100 -8 -5.93809 | opp_overlap 1327000 GTGTTTATATCAAAA CACCCTCG GTTAAG TGAGGGTG TTTTTTTTGTCACGA ccrB 1327462 - 1327058 - | camphor resistance protein CrcB YPN_1162 1327858 - 1327478 - | membrane protein TERM 1483 1327571 - 1327589 + g 73 -11 -2.92668 | overlap 1327566 TGCTCTGCCTCGGGC TGTGGCCA GTT TGGCCGCA TCTAATTGCATACTG YPN_1163 1328126 - 1327947 - | hypothetical protein YPN_1164 1328899 - 1329216 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB YPN_1165 1329227 - 1330588 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC YPN_1166 1330755 - 1331102 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA TERM 1484 1331467 - 1331497 + G 86 -6.8 -4.98061 | overlap 1331470 TGTCTCGGCCTATTG TGGCCTCTCAGGCG TAT CGCTTAAGAGGTGA TTTTCTTTCCTATAT TERM 1485 1331470 - 1331494 + G 75 -10.7 -3.34291 | overlap 1331467 CTCGGCCTATTGTGG CCTCTCAGGCG TAT CGCTTAAGAGG TGATTTTCTTTCCTA YPN_1167 1331151 - 1331981 + | DNA-binding transcriptional regulator ChbR TERM 1486 1332768 - 1332779 + G 72 -3.6 -4.8143 | GCGCAACGTGGTTAT CGGC TGGG GTCG TTTTTAGATTGTTAA YPN_1168 1332033 - 1332794 + | hypothetical protein TERM 1487 1333043 - 1333014 - T 100 -15.9 -2.91065 | opp_overlap 1333019, overlap 1333005 1333016 1333019 ATCATAGACATCACA GATAATGCCCCCA TTTT TAGGGGCATTATC CTACAAGAGGCGACT TERM 1488 1333041 - 1333016 - T 93 -12.7 -3.00259 | opp_overlap 1333019, overlap 1333005 1333014 1333019 CATAGACATCACAGA TAATGCCCCCA TTTT TAGGGGCATTA TCCTACAAGAGGCGA TERM 1489 1333038 - 1333019 - T 80 -10 -3.63762 | opp_overlap 1333019, overlap 1333005 1333016 1333014 AGACATCACAGATAA TGCCCCCA TTTT TAGGGGCA TTATCCTACAAGAGG YPN_1169 1333457 - 1333089 - | hypothetical protein TERM 1490 1334192 - 1334203 + G 74 -7.2 -4.27467 | opp_overlap 1334188 GCAGAACAGAGTAGG GCGG TTAA CCGC TTTATGTTGGTATTA YPN_1170 1333952 - 1334479 + | replication initiation regulator SeqA YPN_1171 1334510 - 1336195 + | phosphoglucomutase TERM 1491 1336273 - 1336250 - f 86 -11.8 -3.16564 | gap 1, opp_overlap 1336250 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT TERM 1492 1336250 - 1336273 + F 100 -11.8 -5.53079 | gap 1, opp_overlap 1336250 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT YPN_1172 1336413 - 1336526 + | hypothetical protein YPN_1173 1336569 - 1336811 + | hypothetical protein TERM 1493 1336874 - 1336857 - T 100 -11.3 -4.8622 | opp_overlap 1336850 1336860 TGGCGCAATTAAAAA TGACCGC TCAG GCGGTCA TCTAAGATTAATTTA YPN_1174 1337367 - 1336939 - | hypothetical protein YPN_1175 1338091 - 1337462 - | DNA-binding transcriptional activator KdpE TERM 1494 1338359 - 1338369 + r 82 -6.8 -4.77567 | overlap 1338356 CTTCGTTATTCTGTC TGCC GCG GGCA TTTTGTTATCAACCT YPN_1176 1341110 - 1338384 - | sensor protein KdpD TERM 1495 1338489 - 1338475 - G 78 -3.5 -5.08255 | opp_overlap 1338482, overlap 1338480 AGTGGCAAAACAAAA CGGAA GCTGG CTCCG CCCTCTTGACGCTTC TERM 1496 1339571 - 1339597 + g 76 -8 -4.15565 | opp_overlap 1339591 TTTCATACAGATGTC TGGCCCGTTGTT CCC GATAACGGGCAA TTTTAGCCTGATAGC TERM 1497 1339761 - 1339734 - G 70 -9.8 -3.2657 | overlap 1339729 1339748 AAAAAACAGATCGAA GCTGGCGACATT AATC ACCGCCGCCAGC ACTGAAGGCCAGCGG YPN_1177 1341770 - 1341120 - | potassium-transporting ATPase subunit C TERM 1498 1341595 - 1341611 + g 79 -12.3 -3.25942 | TTATCGCCCAGTCGC GCCAGTG AAC CACTGGC TTGCTGTGAAAACAT TERM 1499 1341800 - 1341827 + r 71 -9.8 -2.72855 | opp_overlap 1341800 1341799, overlap 1341802 TTTGTGTCTTAAAAC CGGCCACCGCAT CAGG GTGCGATGGCTG TGGTTAAACGGTTTA YPN_1178 1344000 - 1341934 - | potassium-transporting ATPase subunit B TERM 1500 1342523 - 1342561 + g 70 -9.5 -3.30441 | gap 1, opp_overlap 1342521, overlap 1342524 GCCAGAAAATCATCT ACGCC-AGCTTCAGCGGC AATT GCCGCTGCGGTTAGGCGA TTGTCACCGGTGATC TERM 1501 1342524 - 1342560 + g 76 -13 -2.5805 | gap 1, opp_overlap 1342521, overlap 1342523 CCAGAAAATCATCTA CGCC-AGCTTCAGCGGC AATT GCCGCTGCGGTTAGGCG ATTGTCACCGGTGAT TERM 1502 1343247 - 1343213 - G 83 -9.2 -4.40298 | opp_overlap 1343213, overlap 1343214 AGGCAAACCAATAAA GCGACTAGCACGGTGA TGG TCACCGGGCTACCGGC TTGGCTGGCCTCCAC TERM 1503 1343245 - 1343214 - G 73 -10.2 -3.23094 | gap 1, opp_overlap 1343213, overlap 1343213 GGCAAACCAATAAAG CGACTAGCACGGTGA TGG TCACCGGGCTA-CCG GCTTGGCTGGCCTCC YPN_1179 1345782 - 1344094 - | potassium-transporting ATPase subunit A TERM 1504 1344873 - 1344861 - G 70 -10.5 -2.93447 | overlap 1344860 CTAACGGGGATAAAT GCGGG TTT CCCGC CAGTTCGGCGTACAT TERM 1505 1345024 - 1345008 - G 70 -2.2 -4.92783 | AAGGGATCAGAAAAA TGGCCA GCATT TGGACA AAATTACTGAATGCA TERM 1506 1345724 - 1345708 - G 82 -7.9 -4.60924 | CAAACGTGCTAAAAA CCCACCC AAC GGACGGG ACAACACGAACAACA YPN_1180 1345872 - 1345783 - | K+-transporting ATPase, F subunit TERM 1507 1346051 - 1346071 + H 71 -6.9 -4.12225 | opp_overlap 1346050 1346053 TTGGTTTGTGAAACT TACTTTCAC CGG GTGAATGTA TTTGGTTTGCTAATT TERM 1508 1346439 - 1346425 - g 72 -3.5 -4.84359 | GTATCTGGATAAAAA CCAGT GATAA ACCGG TTTGGCTGACCCAAT YPN_1181 1346277 - 1346483 + | hypothetical protein TERM 1509 1346535 - 1346559 + F 100 -12.1 -5.16237 | TACAAAAAATAGCTG GCCCGTGAGTA TCA TGCCCACGGGC TTTTTTAATGCGCTT YPN_1182 1346822 - 1347304 + | hypothetical protein TERM 1510 1347719 - 1347733 + G 72 -3.5 -4.77165 | TTTTGTCAGCAACAG CAGGT CGATA GCCTG TTTTATTCTCAACAG TERM 1511 1348045 - 1348077 + G 74 -4 -4.91109 | opp_overlap 1348054, overlap 1348046 1348054 CCAGTTATTTCCTGC AGGGGAAGACGCTG CCTTA CAGCGTTTACGCCG TTTTTGTCGTGAACA YPN_1183 1347434 - 1348897 + | deoxyribodipyrimidine photolyase YPN_1184 1348888 - 1349925 + | 3',5'-cyclic-nucleotide phosphodiesterase YPN_1185 1350065 - 1350811 + | putative hydrolase-oxidase TERM 1512 1350833 - 1350853 + F 100 -13.3 -2.9518 | overlap 1350849 GGATAGGGCTATTTT CGCCGATGT TTA GCATCGGCG TGTCTCCGTCTTACA YPN_1186 1351430 - 1351975 + | hypothetical protein YPN_1187 1352080 - 1353030 + | hypothetical protein YPN_1188 1353027 - 1353764 + | hypothetical protein TERM 1513 1354441 - 1354467 + G 74 -7.3 -4.15841 | gap 1, overlap 1354444 CGGAACCATTGCATA TCGCGCTGTGGG GGAT CCCA-ACCGCGA TTTGTGCTTTCCTGA YPN_1189 1353849 - 1354580 + | hypothetical protein YPN_1190 1354577 - 1355596 + | hypothetical protein YPN_1191 1355606 - 1356253 + | pyrrolidone-carboxylate peptidase TERM 1514 1356292 - 1356265 - T 82 -10.6 -3.62597 | gap 1 CTGATCTTCCAATAA CCTCACGGCAGCC GAA GG-TGGCGTGAGG TTACAGACAACGTCC YPN_1192 1357030 - 1356344 - | uracil-DNA glycosylase TERM 1515 1357269 - 1357256 - H 73 -3.9 -5.0133 | overlap 1357260 GATGTGGTGAAAAAA TTGAT TTGA ATCAA AGAATGGTAGGGGCT YPN_1193 1357383 - 1357766 + | autonomous glycyl radical cofactor GrcA TERM 1516 1357815 - 1357830 + F 100 -10.4 -5.1675 | opp_overlap 1357813 AATCATAAAGTGATA GGGGAC TTCG GTCCCC TTTTTTCATGCCTGA YPN_1194 1357945 - 1358907 + | phospholipase A YPN_1195 1358985 - 1359641 + | phospholipase A accessory protein TERM 1517 1359751 - 1359734 - T 74 -4.8 -4.78237 | opp_overlap 1359729, overlap 1359729 1359721 TATCTGACAACAAAA CCGCTA TGTGAG CAGCGG CTTTGTTGTCGTGCA YPN_1196 1361097 - 1359772 - | ATP-dependent RNA helicase SrmB TERM 1518 1360863 - 1360878 + g 79 -5.4 -5.00616 | gap 1 GCGTCAGGATCAGGA TCCGCGG TGG CC-CGGA TTTTTTGCGGGGGAA YPN_1197 1361349 - 1362095 + | hypothetical protein TERM 1519 1362170 - 1362147 - T 83 -8.9 -4.08958 | gap 1, opp_overlap 1362146 AGCGTGAAATAAGAA TC-GGGCGTC GTAGA GACGCCCTGA GGTTATTGACAAAGT TERM 1520 1362245 - 1362271 + T 72 -10.1 -2.88849 | gap 1, overlap 1362240 1362246 ACATCTATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1521 1362246 - 1362272 + T 84 -10.1 -3.82218 | gap 1, overlap 1362240 1362245 CATCTATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1522 1362332 - 1362356 + T 79 -11.4 -2.56539 | overlap 1362331 1362329 GGTTTGTCAGCAGTC TGCGGGCGTC GTAGA GACGCCCTCA ATCTTATGGATTCAG YPN_1198 1364015 - 1362378 - | L-aspartate oxidase TERM 1523 1362595 - 1362605 + g 76 -6.8 -4.46212 | ATGCGCCGTAAAGCC CGCT CTA AGCG TTTTGTGGTACGGAC TERM 1524 1363853 - 1363843 - G 70 -2.4 -4.91109 | overlap 1363845 CCCTGAGCATAAAAA GTGG CTC CCTC ATTAAGAGGCCCTTT YPN_1199 1364203 - 1364778 + | RNA polymerase sigma factor RpoE YPN_1200 1364804 - 1365460 + | anti-RNA polymerase sigma factor SigE TERM 1525 1365549 - 1365516 - g 86 -13.3 -3.59979 | gap 1, opp_overlap 1365518 CCTGTTCATGGCAAA CATTGCT-TCGGCGGA ATC TACGCCGATAGCAATG TTGCAGGAAATGGGC rseB 1365460 - 1366416 + | periplasmic negative regulator of sigmaE TERM 1526 1366792 - 1366782 - g 71 -6.8 -4.26076 | TTACTGGCACGAAAA CTGG CAA CCAG AATTGAGGGGCTCAG YPN_1202 1366413 - 1366868 + | SoxR reducing system protein RseC YPN_1203 1367743 - 1366889 - | hypothetical protein TERM 1527 1367675 - 1367693 + g 70 -4.4 -4.64383 | opp_overlap 1367664, overlap 1367676 TATAGCTATTATTGT AGCAAGGG TAA CCCATGCA TTTTCATTTCTCATT TERM 1528 1367763 - 1367783 + H 75 -8.3 -3.80733 | CTCTCCTCGTTACCG CCAAGAGAA TAT TTCACTTGG TTATTATAAAATCAC TERM 1529 1368247 - 1368234 - H 73 -3.9 -5.01497 | ACGACTAGAGAAAAA TTCAT ATAA ATGAA GCACATAAGAAACTT YPN_1204 1368243 - 1370042 + | GTP-binding protein LepA YPN_1205 1370052 - 1371050 + | lsignal peptidase I rnc 1371402 - 1372082 + | ribonuclease III era 1372079 - 1372990 + | GTP-binding protein Era TERM 1530 1373141 - 1373154 + G 76 -8.1 -4.12599 | opp_overlap 1373141 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT TERM 1531 1373154 - 1373141 - g 76 -8.1 -4.27316 | opp_overlap 1373141 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT recO 1373000 - 1373725 + | DNA repair protein RecO YPN_1209 1373884 - 1374615 + | pyridoxal phosphate biosynthetic protein PdxJ acpS 1374615 - 1374995 + | 4'-phosphopantetheinyl transferase TERM 1532 1375024 - 1375048 + F 78 -5.8 -4.82901 | gap 1, opp_overlap 1375024 TAGCCGAAAATTTAA GGGATGGGTAT GGAA ATGC-CATCCC TTTTTGTGCCCAGAA TERM 1533 1375084 - 1375066 - f 100 -16 -4.36914 | opp_overlap 1375066 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1534 1375066 - 1375084 + F 100 -16 -3.07307 | opp_overlap 1375066 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1211 1375197 - 1375655 + | transposase for the IS1541 insertion element TERM 1535 1375733 - 1375757 + T 88 -9.9 -4.21974 | opp_overlap 1375736, overlap 1375735 1375736 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGCATACTGG TERM 1536 1375735 - 1375755 + T 100 -12.5 -3.70709 | opp_overlap 1375736, overlap 1375733 1375736 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGCATACT TERM 1537 1375736 - 1375754 + T 100 -16 -2.81702 | opp_overlap 1375736, overlap 1375735 1375733 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCATAC TERM 1538 1375754 - 1375736 - T 100 -16 -4.8048 | opp_overlap 1375736 1375735 1375733 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCATAC YPN_1212 1376071 - 1375811 - | hypothetical protein YPN_1213 1377072 - 1376233 - | putative DNA-binding transcriptional regulator murQ 1377280 - 1378167 + | N-acetylmuramic acid-6-phosphate etherase YPN_1215 1378442 - 1379089 + | hypothetical protein YPN_1216 1379199 - 1379762 + | tRNA-specific adenosine deaminase TERM 1539 1379778 - 1379808 + T 79 -11 -3.18912 | overlap 1379779 CGGTGGCCAGGTGAT GCGCCGCCCAGCAT GTT ATGACGGGCGGCGG TTGGTGACTAAATCA TERM 1540 1379779 - 1379807 + T 100 -14.5 -2.51133 | overlap 1379778 GGTGGCCAGGTGATG CGCCGCCCAGCAT GTT ATGACGGGCGGCG GTTGGTGACTAAATC YPN_1217 1381412 - 1379871 - | putative transglycosylase TERM 1541 1379935 - 1379951 + g 100 -6.5 -5.69068 | overlap 1379923 AGCTCCGCCTCAATG GCGGC ATGTTGA GCCGC TTTTTTCTCTTTTTC TERM 1542 1382936 - 1382925 - g 76 -5.8 -4.60487 | overlap 1382933 GATCATGTGCAAAAA GGTG AAAT CACC GTGGGGGCCAAATTG TERM 1543 1383633 - 1383592 - g 73 -2.9 -5.0538 | gap 1, opp_overlap 1383618 CGGTAGCGGAAAAAA CCTTCCTGATCACCAT-CGG CGA CCGCACGGTAACCGGTATGG TCACCCGTGATCAGA TERM 1544 1384594 - 1384581 - g 72 -8.1 -3.95073 | opp_overlap 1384580 1384581, overlap 1384585 GTGTACAGCGAGAAA CGCAG CACT CTGCG CTTGTGGTGGGCAGA YPN_1218 1381674 - 1385537 + | phosphoribosylformylglycinamidine synthase TERM 1545 1385649 - 1385675 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1385638, overlap 1385644 1385650 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1546 1385650 - 1385676 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1385638, overlap 1385644 1385649 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1547 1385737 - 1385759 + T 90 -11.4 -3.60597 | overlap 1385735 1385740 GTTTGTCAGCAGTCT GAAGGGTATT GAA GATACCCTTC TCTTTATCAATTTAT TERM 1548 1385740 - 1385756 + T 72 -7.3 -3.91369 | overlap 1385737 1385735 TGTCAGCAGTCTGAA GGGTATT GAA GATACCC TTCTCTTTATCAATT TERM 1549 1385873 - 1385901 + T 70 -2.6 -4.98352 | gap 1, overlap 1385879 TCCCTTGTTGCCTTT CTGTA-ACTCAAA TTAT TTTGGGTATATAG TTTATTTTATTTAAT YPN_1219 1386527 - 1385949 - | hypothetical protein TERM 1550 1386567 - 1386581 + r 73 -8.6 -3.68222 | ATAACCGTTGTCATC CAAGTC ACT GACTTG TTGTTGACCTTAAAA YPN_1220 1387410 - 1386850 - | hypothetical protein TERM 1551 1388278 - 1388311 + H 80 -9.8 -3.617 | gap 2, opp_overlap 1388275, overlap 1388278 1388273 1388284 GGCATCCACATATTC TTG--CAACGGGGCAA TTTA TTGCCCCGTTGATCAA TGTTTAGTTGTCTAT TERM 1552 1388284 - 1388303 + H 100 -13.6 -3.23638 | opp_overlap 1388275, overlap 1388278 1388278 1388273 CACATATTCTTGCAA CGGGGCAA TTTA TTGCCCCG TTGATCAATGTTTAG TERM 1553 1388465 - 1388486 + H 100 -8.1 -5.60993 | gap 1, opp_overlap 1388465 CAACCTTTAAAAAAA GCACTTTGCT CGC AGCAA-GTGC TTTTTTTGTGCCCAG TERM 1554 1388486 - 1388465 - H 100 -8.1 -5.43866 | gap 1, opp_overlap 1388465 CAACCTTTAAAAAAA GCACTTTGCT CGC AGCAA-GTGC TTTTTTTGTGCCCAG TERM 1555 1388506 - 1388524 + H 100 -16 -3.07307 | opp_overlap 1388506 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1556 1388524 - 1388506 - H 100 -16 -4.36914 | opp_overlap 1388506 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1221 1388637 - 1389095 + | transposase for the IS1541 insertion element TERM 1557 1389169 - 1389201 + F 100 -11.3 -5.00196 | opp_overlap 1389176, overlap 1389175 1389176 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTGTTATTTCAAC TERM 1558 1389175 - 1389195 + F 100 -12.5 -4.06214 | opp_overlap 1389176, overlap 1389169 1389176 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTGTTAT TERM 1559 1389176 - 1389194 + F 100 -16 -3.01288 | opp_overlap 1389176, overlap 1389175 1389169 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGTTA TERM 1560 1389194 - 1389176 - f 100 -16 -4.8048 | opp_overlap 1389176 1389175 1389169 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGTTA YPN_1222 1389316 - 1390752 + | two-component system sensor kinase TERM 1561 1390842 - 1390858 + GF 89 -7.3 -5.00884 | CGTGAAACAGACCGG TCTCTCT GGC AGAGGGA TTTTTTGGGGAGCGT YPN_1223 1390756 - 1391823 + | hypothetical protein TERM 1562 1392770 - 1392781 + GF 74 -7.2 -4.19371 | CGGGAGTCGGCTAAG CGGC ATAA GCCG TTTGTTCGCAGTTTC YPN_1224 1391786 - 1393123 + | two-component system response regulator nadE 1393283 - 1394905 + | NAD synthetase YPN_1226 1394920 - 1395258 + | nitrogen regulatory protein P-II 1 TERM 1563 1395297 - 1395322 + T 91 -6.2 -5.50499 | gap 1, opp_overlap 1395297 GCTGAATAACAAAAG CCCGT-TCGTT GCCAA AACGATGCGGG TTTTTTTACATATAA YPN_1227 1395831 - 1395427 - | hypothetical protein YPN_1228 1396695 - 1395916 - | transposase/IS protein TERM 1564 1396614 - 1396628 + g 77 -11.4 -3.3506 | overlap 1396627 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_1229 1397717 - 1396695 - | transposase for insertion sequence IS100 TERM 1565 1397739 - 1397721 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_1230 1398286 - 1397744 - | hypothetical protein TERM 1566 1398713 - 1398686 - R 80 -9.9 -3.695 | overlap 1398687 TTGAAATAGCCGAAA TGCTGATCAGG TACCTT CCTGATCAGCG GCATTAAGTGCGTAG TERM 1567 1398712 - 1398687 - R 93 -13.4 -2.81218 | overlap 1398686 TGAAATAGCCGAAAT GCTGATCAGG TACCTT CCTGATCAGC GGCATTAAGTGCGTA YPN_1231 1399940 - 1398750 - | nitric oxide dioxygenase TERM 1568 1400095 - 1400083 - H 80 -6.3 -4.87626 | overlap 1400076 GCTGAAGATGAAAAA TTCAC ATA GTGAA TATGAGGATAATTCT glyA 1400481 - 1401734 + | serine hydroxymethyltransferase TERM 1569 1401748 - 1401769 + F 95 -11.5 -3.86202 | AAGGCGGCTGTCACC GTCCTGGCC TCCT GGCCGGGGC TTTGATCTCATCGGG YPN_1233 1402178 - 1402726 + | attachment invasion locus protein TERM 1570 1402763 - 1402747 - f 72 -6.5 -4.3534 | opp_overlap 1402748, overlap 1402748 TCCTAACCATGAAAA CCCACCA TAA TGGTGGT TTCAAATTGCTGACA TERM 1571 1402762 - 1402748 - f 74 -10 -3.20722 | opp_overlap 1402748, overlap 1402747 CCTAACCATGAAAAC CCACCA TAA TGGTGG TTTCAAATTGCTGAC TERM 1572 1402748 - 1402762 + F 80 -10 -3.67976 | opp_overlap 1402748 1402747 CCTAACCATGAAAAC CCACCA TAA TGGTGG TTTCAAATTGCTGAC YPN_1234 1403078 - 1404235 + | putative 3-phenylpropionic acid transporter YPN_1235 1405608 - 1404232 - | stationary phase inducible protein CsiE TERM 1573 1404321 - 1404294 - G 79 -12.8 -3.03781 | opp_overlap 1404295, overlap 1404289 TTAACGGAAATGATA TCTGAATCAGCG GCGG CGCTGATTCAGT TGATTGCAAAACATA TERM 1574 1404295 - 1404320 + g 100 -16.3 -3.33815 | opp_overlap 1404294 1404289 TAACGGAAATGATAT CTGAATCAGCG GCGG CGCTGATTCAG TTGATTGCAAAACAT TERM 1575 1406032 - 1406046 + G 72 -10 -3.36073 | overlap 1406031 GAAGTGATGGCTAAT GTGCTG GGG CAGCAC TATTTCACCGATATA YPN_1236 1405750 - 1406424 + | hypothetical protein YPN_1237 1406415 - 1407437 + | hypothetical protein TERM 1576 1407505 - 1407482 - T 100 -8.9 -5.7946 | gap 1, opp_overlap 1407482 TTCCCAATAAAAAAA GCCAGTC-GG CTAAC CCTGACTGGC TTTTTATCTGAAACG TERM 1577 1407482 - 1407505 + T 100 -10.3 -4.96848 | opp_overlap 1407482 TTCCCAATAAAAAAA GCCAGTCGG CTAACC CTGACTGGC TTTTTATCTGAAACG YPN_1238 1408339 - 1407536 - | inositol monophosphatase TERM 1578 1408574 - 1408537 - g 87 -9.5 -4.29738 | gap 1, opp_overlap 1408541 1408543 1408572 CCAGAGCCATGAAAA CAATGGGATTAACCAA TCTATAT TTGGTTAATCC-ATTG GTAAAACCAGATTCT YPN_1239 1408458 - 1409231 + | SpoU rRNA methylase family YPN_1240 1409387 - 1409881 + | DNA-binding transcriptional regulator IscR YPN_1241 1409935 - 1411164 + | aminotransferase YPN_1242 1411195 - 1411581 + | scaffold protein iscA 1411851 - 1412174 + | iron-sulfur cluster assembly protein hscB 1412285 - 1412809 + | co-chaperone HscB TERM 1579 1414833 - 1414854 + G 86 -13.7 -3.61398 | opp_overlap 1414830 TGAGCAAGAAAGTGC CGCGATCGC CCAA GCGGTCGCG TTATTACAGCAGCAG TERM 1580 1414942 - 1414973 + G 91 -15.2 -3.56568 | ACGCAAGATTTTGCC GCACGCCGGATGGA CGCT TCCATTCGCCGTGC TTTAGCGGGTCATTC hscA 1413052 - 1415004 + | chaperone protein HscA YPN_1246 1415007 - 1415342 + | ferredoxin YPN_1247 1415372 - 1415572 + | hypothetical protein TERM 1581 1415583 - 1415598 + F 100 -8.2 -5.49234 | AGTGAATACTGACTG GGTCGC GCAA GCGGCC TTTTTTATTGCGTAT TERM 1582 1416620 - 1416599 - g 71 -6.5 -4.25104 | opp_overlap 1416589 TGCCTCCGAGCAAAA TGCGCCGTT GATT ATCGACGCA GCCACCTTAACCGGC YPN_1248 1415712 - 1417010 + | aminopeptidase B TERM 1583 1417032 - 1417058 + F 78 -10.1 -3.42459 | opp_overlap 1417021 1417036, overlap 1417025 1417036 TGAATTGAGAAGACT CAAAGGGGCGC ATTTG GCGTCCCTTCG TTCATCTTCTCGATG TERM 1584 1417054 - 1417036 - f 70 -7.3 -3.79071 | opp_overlap 1417032 1417025 1417036 TTGAGAAGACTCAAA GGGGCGC ATTTG GCGTCCC TTCGTTCATCTTCTC TERM 1585 1417036 - 1417054 + F 76 -9.5 -3.4684 | opp_overlap 1417036, overlap 1417032 1417025 TTGAGAAGACTCAAA GGGGCGC ATTTG GCGTCCC TTCGTTCATCTTCTC TERM 1586 1417362 - 1417384 + G 70 -8.5 -3.7398 | gap 1, overlap 1417361 GATGGCGAAATGAGT TTCACCACCG CTAA CGG-GGTGAA TATTTTGCATTGGGA TERM 1587 1417650 - 1417628 - g 86 -13.4 -3.61715 | GATGCTGTTGAAGAA CGGCGGGTTG GTG CAACCCGCTG AAATGGTGGTAGACA YPN_1249 1417089 - 1418042 + | enhanced serine sensitivity protein SseB TERM 1588 1418080 - 1418061 - T 79 -10.7 -3.11281 | overlap 1418059 1418057 GTATCTAAAAGGATA GGGAGCC AATAGA GGCTCCC AGACTGCTGACAAAC TERM 1589 1418167 - 1418141 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1418150, overlap 1418142 1418157 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1590 1418168 - 1418142 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1418150, overlap 1418141 1418157 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1591 1418246 - 1418265 + T 81 -10.7 -3.32997 | TTGTCAATAACCTCA GGGAGCC AATAGA GGCTCCC TTCCATTTCTGCCAC YPN_1250 1418700 - 1418380 - | hypothetical protein YPN_1251 1421662 - 1418666 - | hypothetical protein TERM 1592 1422130 - 1422105 - R 100 -11.1 -4.7078 | opp_overlap 1422105 1422117 1422118 TTAATCAGGTAAAAA GCAGGGAGCCA ATTG CAGCCCCCTGC GGTTTTTATCAGTCA YPN_1252 1426596 - 1422220 - | autotransporter protein TERM 1593 1425141 - 1425158 + g 76 -6.3 -4.67942 | gap 1 CTTCTTTAGCTTTTT CAGCCGCT TCA AG-GGCTG TTTTAGTTTGTTCCG TERM 1594 1425454 - 1425477 + g 83 -5.2 -5.13521 | overlap 1425457 CTCAACTGCTTTTTG GGCCTTGGCG ATAG CGTCAAGTTC TTTTTTAGCTGCTTT TERM 1595 1425457 - 1425474 + g 82 -7.7 -4.64763 | overlap 1425454 AACTGCTTTTTGGGC CTTGGCG ATAG CGTCAAG TTCTTTTTTAGCTGC YPN_1253 1427137 - 1426880 - | hypothetical protein TERM 1596 1427806 - 1427796 - g 76 -3.2 -5.12068 | TATATTCAATAAAAA TCCC TCC AGGA ATGCAAACTACAGTC TERM 1597 1428190 - 1428211 + G 76 -3.1 -5.17507 | TTTGTTTAATTTAAG TGACAAA AGTAGTAA TTTGTCA TTTTTATTGCGTTTT TERM 1598 1429137 - 1429149 + G 71 -6.3 -4.37092 | GTTATGAACTGGCAC TGGTA GAT TACCA TTTTATCGAGACGGT YPN_1254 1427312 - 1429732 + | hypothetical protein TERM 1599 1430357 - 1430375 + G 70 -3 -4.86033 | opp_overlap 1430349 1430350, overlap 1430358 CAGATAACGCACTAG CCGGTACG CTA CGTGCTGA TTTTTCTGACAGTTT ndk 1430059 - 1430487 + | nucleoside diphosphate kinase TERM 1600 1430614 - 1430653 + F 100 -13.6 -4.11906 | opp_overlap 1430614 1430615, overlap 1430619 TTAAAATTTGTACAA TGCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTTCTA TTATTTATACATTCT TERM 1601 1430653 - 1430614 - f 74 -9.2 -3.36518 | opp_overlap 1430614 1430619, overlap 1430615 TTAAAATTTGTACAA TGCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTTCTA TTATTTATACATTCT TERM 1602 1430651 - 1430615 - f 80 -11.6 -2.61429 | gap 1, opp_overlap 1430614 1430619, overlap 1430614 TAAAATTTGTACAAT GCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTT-C TATTATTTATACATT TERM 1603 1430619 - 1430648 + F 100 -20.1 -3.93744 | opp_overlap 1430615 1430614, overlap 1430614 ATTTGTACAATGCCA CGCCCCAGTAGAG ACAG CTCTGCTGGGGCG TTCTATTATTTATAC YPN_1256 1430749 - 1431945 + | hypothetical protein YPN_1257 1432099 - 1432848 + | fimbrial biogenesis protein YPN_1258 1432838 - 1433875 + | hypothetical protein TERM 1604 1434060 - 1434049 - g 73 -5.8 -4.44797 | opp_overlap 1434057, overlap 1433994 TGACCAATACCAAAA CCAC GGAT GTGG ATGCCACTGTTGCCC TERM 1605 1435021 - 1435005 - g 74 -9.5 -3.55203 | AAAATTCGTGCCAAA GCATCAA TTC TTGATGC GAATAACCGGATTGT ispG 1433937 - 1435064 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase hisS 1435273 - 1436547 + | histidyl-tRNA synthetase YPN_1261 1436561 - 1437196 + | hypothetical protein YPN_1262 1437208 - 1438389 + | outer membrane protein assembly complex subunit YfgL TERM 1606 1438434 - 1438456 + F 100 -13.4 -4.27117 | opp_overlap 1438434, overlap 1438451 CCAGTACCTCAAAAA CGGCTCCTGG GAC TCAGGGGCCG TTTGTATTCTAAAAA TERM 1607 1438456 - 1438434 - f 100 -10.5 -4.63527 | opp_overlap 1438434 1438451 CCAGTACCTCAAAAA CGGCTCCTG GGACT CAGGGGCCG TTTGTATTCTAAAAA engA 1438537 - 1440024 + | GTP-binding protein EngA TERM 1608 1440143 - 1440169 + F 86 -10.1 -3.9749 | gap 1, overlap 1440142 CTTCCTTGGGAGCTT GAG-CCGCGCCA TCTC TGGCGCGGACAC TTTACTCTTCTGCCT TERM 1609 1440220 - 1440231 + F 85 -2.2 -5.77988 | CGTCATCGGGGTTTG TCAG TAGC CTGG TTTTTTTCTCTATAT YPN_1264 1440371 - 1441327 + | hypothetical protein YPN_1265 1441376 - 1441600 + | hypothetical protein xseA 1443096 - 1441717 - | exodeoxyribonuclease VII large subunit TERM 1610 1443805 - 1443789 - g 70 -2.2 -5.00616 | overlap 1443791 TTGTGCTGCAAAAAA TGCACG AAAAA CGTGTA GAGAAAGTGTTGGTC YPN_1267 1443266 - 1444729 + | inositol-5-monophosphate dehydrogenase TERM 1611 1444742 - 1444772 + F 100 -9.9 -5.79595 | opp_overlap 1444742 1444745 1444746 TAACAATTAGTTAAA TAATCATCTGGTG CTGGC CATCAGATGGTTA TTTTTTATTTTAAAA guaA 1444909 - 1446486 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1612 1446553 - 1446534 - f 84 -6.4 -4.98616 | opp_overlap 1446534 TGAAAATAGCAAAAA CCGCCT TGAATATT AGGCGG TTTGAGGTTATTGAC TERM 1613 1446708 - 1446689 - f 70 -7.8 -3.58343 | opp_overlap 1446689, overlap 1446704 GCCAGCAGTCTGAAA CCGCCTTA AATA TTAGGCGG TTTTTTGTTGTGCCC TERM 1614 1446689 - 1446708 + F 100 -7.8 -5.55769 | opp_overlap 1446689 1446704 GCCAGCAGTCTGAAA CCGCCTTA AATA TTAGGCGG TTTTTTGTTGTGCCC TERM 1615 1446748 - 1446730 - f 100 -16 -4.36914 | opp_overlap 1446730, overlap 1446704 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1616 1446730 - 1446748 + F 100 -16 -3.07307 | opp_overlap 1446704 1446730 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1269 1446861 - 1447319 + | transposase for the IS1541 insertion element TERM 1617 1447393 - 1447425 + T 100 -11.3 -5.1286 | opp_overlap 1447400, overlap 1447399 1447400 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTATGGTTTTTA TERM 1618 1447399 - 1447419 + T 100 -12.5 -4.09508 | opp_overlap 1447400, overlap 1447393 1447400 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTATGG TERM 1619 1447400 - 1447418 + T 100 -16 -3.04078 | opp_overlap 1447400, overlap 1447399 1447393 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTATG TERM 1620 1447418 - 1447400 - T 100 -16 -4.8048 | opp_overlap 1447399 1447393 1447400 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTATG YPN_1270 1447958 - 1447479 - | hypothetical protein YPN_1271 1448380 - 1447982 - | hypothetical protein YPN_1272 1448863 - 1448444 - | hypothetical protein TERM 1621 1448887 - 1448897 + r 70 -2.6 -4.96848 | AAATTATTTTCTTGT TAAA TAT TTTA TTTTTATCTACAAAG YPN_1273 1449296 - 1448901 - | hypothetical protein YPN_1274 1450453 - 1449752 - | membrane protein TERM 1622 1450003 - 1449993 - G 76 -6.8 -4.49377 | CCTACAATAAAAGAA GTCG CCG CGAC AATGGCTATTTTAGC TERM 1623 1451660 - 1451681 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1275 1450478 - 1451686 + | transposase for the IS285 insertion element YPN_1276 1451976 - 1451698 - | hypothetical protein YPN_1277 1452502 - 1452035 - | membrane protein TERM 1624 1452961 - 1452979 + H 75 -8.9 -3.57561 | ACCTGCCGTTCTCTT TTCAGCC ACTGC GGCTGAA TTTACGCCATTAGCC TERM 1625 1453168 - 1453158 - g 74 -6.8 -4.36914 | GCTGGTGGCACAAAA CACC CGT GGTG TGCAGTCGGTTTATC TERM 1626 1453755 - 1453802 + G 71 -10.7 -3.08508 | gap 1, opp_overlap 1453761, overlap 1453754 1453759 TTTGCAACGTGCGCT GGAACAGG-CCGATACCCTG GAGGTGGGG CAGGGCATCGGGCCTGTTCA TCATTTTCACCAATG TERM 1627 1453759 - 1453798 + G 72 -10.1 -3.37533 | gap 1, opp_overlap 1453761, overlap 1453755 1453754 CAACGTGCGCTGGAA CAGG-CCGATACCCTG GAGGTGGGG CAGGGCATCGGGCCTG TTCATCATTTTCACC YPN_1278 1453024 - 1453824 + | phosphomethylpyrimidine kinase YPN_1279 1454632 - 1453886 - | hypothetical protein TERM 1628 1454561 - 1454572 + gT 82 -7.2 -4.74518 | opp_overlap 1454551 AATGACAAAACCGTT CGCG GTAC CGCG TTTGTTTTGATAATT YPN_1280 1454774 - 1454604 - | hypothetical protein YPN_1281 1455005 - 1455514 + | hypothetical protein TERM 1629 1455524 - 1455547 + T 73 -8.2 -3.61715 | CGCTGAGTTTTGCAC GTCATGACTC TTAT GAGTGATGAC TTATTGCCAACAATG TERM 1630 1455577 - 1455617 + T 76 -6.7 -4.56113 | opp_overlap 1455593 1455594, overlap 1455579 GCCCCGAATCGCCAA TGGCGGAGCAAGACAAGGG CGG TTCTCGCCGTGCTCCGCTG TTTATTTACTCTGTT TERM 1631 1455579 - 1455615 + T 81 -9.3 -3.8721 | opp_overlap 1455593 1455594, overlap 1455577 CCCGAATCGCCAATG GCGGAGCAAGACAAGGG CGG TTCTCGCCGTGCTCCGC TGTTTATTTACTCTG YPN_1282 1456691 - 1455801 - | lipid kinase TERM 1632 1455926 - 1455960 + g 74 -6.5 -4.36508 | gap 1, overlap 1455923 TATCGTTCGGTGCAG TGATATCGA-GCCAAG GTAC CGTGGCGTCGATAACA TTCTTATTTTTCTCA TERM 1633 1457173 - 1457146 - R 100 -13.5 -5.43553 | AGGGAAAAAAGAAAA GGCCAGCCCAA GGGAGA TTGGGCTAGCC AAGGAGGTGGTTCCT TERM 1634 1457307 - 1457289 - R 85 -6 -5.17353 | opp_overlap 1457289 ATATTTACTAAAAAA TGCCAC TTTATCT GTGGCA TTCATTTTATTGAAT YPN_1283 1458721 - 1457327 - | protease TERM 1635 1458936 - 1458914 - R 79 -7.7 -4.32046 | CGTGCAAAAATGAAA TGCGCGG TTAATGGCC CCGCGCA GGGATAAGTGGTCGT YPN_1284 1459334 - 1458996 - | hypothetical protein YPN_1285 1460190 - 1459471 - | DNA-binding transcriptional regulator BaeR YPN_1286 1460457 - 1460200 - | ATP-binding region, ATPase-like protein YPN_1287 1461584 - 1460469 - | hypothetical protein TERM 1636 1460580 - 1460592 + g 78 -4.1 -5.18726 | TTCAGGCAGGTGGGC GGTGA TGG TCATC TTTTTGTTCTGGAAG YPN_1288 1463012 - 1461615 - | multidrug efflux system protein MdtE TERM 1637 1461955 - 1461936 - G 72 -8.6 -3.9461 | GCCTTGGAAGAATAA CACTACTG GCAT CAGCAGTG TCCAACCCATGATTG TERM 1638 1462589 - 1462548 - G 100 -10.8 -4.75404 | gap 1 AAATTCCACTAAAAA CCCGCCCAGCGCCGGGCCA ACTAA TGGCCCAAT-CTGGCCGGG CAGTGTGACAAACGC YPN_1289 1466120 - 1463046 - | multidrug efflux system subunit MdtC YPN_1290 1469275 - 1466117 - | multidrug efflux system subunit MdtB TERM 1639 1467654 - 1467619 - G 77 -9 -3.97042 | GGATCAGCAAGTAAA GTATCACCGTCAGCAC CAGT GTGCTGAACGCGACAC TTAGGGTCAGCCACG TERM 1640 1468422 - 1468438 + g 76 -5.8 -4.67697 | overlap 1468423 ATTGCTGATTGAGTA TTGGCC CAGGC GGCCAG TTTGTTATTTTCCGC TERM 1641 1469256 - 1469231 - G 71 -6.1 -4.30719 | gap 1, opp_overlap 1469243 1469254, overlap 1469233 1469234 CGGGCGCAGAATAAA CAGCC-GTGACG GCC CGCCACCGGGTG TTGGAGGCATCACTT TERM 1642 1469243 - 1469233 - G 70 -8.2 -3.75817 | overlap 1469231 1469234 GGCGCAGAATAAACA GCCG TGA CGGC CCGCCACCGGGTGTT YPN_1291 1470609 - 1469275 - | multidrug efflux system subunit MdtA TERM 1643 1470613 - 1470624 + r 75 -2.2 -5.31877 | gap 1, overlap 1470613 TTGAGATTTCATGAT GG-CG AAG CGTCC TTTTTTATCGTGGCT YPN_1292 1472058 - 1470973 - | putitive ABC-transporter ATP-binding protein YPN_1293 1473946 - 1472441 - | GntR family regulatory protein TERM 1644 1472545 - 1472562 + g 73 -5.5 -4.68593 | gap 1, opp_overlap 1472545 1472546, overlap 1472545 1472546 CATAACCGAGTAACA G-CCCTCG TCG CGGGGGAC TTTTTAAGTAATAGC TERM 1645 1472918 - 1472931 + g 76 -8.1 -4.26076 | GTAGCTGATACGCAT CCCTG GATA CAGGG TTTTACTGAAGGTAC TERM 1646 1473253 - 1473265 + g 73 -9.1 -3.67597 | ACACGTTGCGGATCC CCCAG TAG CTGGG TTCTTCAATCCAGGC TERM 1647 1475189 - 1475160 - g 70 -4.3 -4.62783 | gap 1 GACGTACTGGAAAAA GCCCA-AATGAGCA ATG CGGCCATTGTGGGC ATTCGTGCGCGTGGA YPN_1294 1474104 - 1475417 + | 4-aminobutyrate aminotransferase TERM 1648 1476397 - 1476419 + G 74 -7.6 -4.13767 | GCTAATTTACCCACT GCGCCAGCCA ACC TGGCTGAGGC TTTTCCCATGAACAA YPN_1295 1475470 - 1476498 + | transport system periplasmic protein TERM 1649 1476968 - 1476947 - g 82 -11.6 -3.70149 | TCGACACTACGGAAA GTACCGGC TGAAGG GCCGGTAC GTGAAGCGCTAATCA YPN_1296 1476545 - 1477810 + | ABC transporter permease YPN_1297 1477872 - 1478720 + | ABC transporter permease TERM 1650 1478975 - 1478948 - T 100 -9.9 -5.09204 | overlap 1478966 ATACGCCAACAAAAA CTCTCAGTGCG AGATAA CTCACTGAGAG GTGAACATAATAGGG YPN_1298 1480344 - 1478992 - | putative chaperone YPN_1299 1481959 - 1480484 - | divalent cation transport protein TERM 1651 1482282 - 1482318 + r 86 -8 -4.65916 | gap 1, opp_overlap 1482286, overlap 1482285 CGCTCATGCTGTCAA TTGACGCACCGGGTGAT GACA ACCACCCGGTGCA-CGA TTTTATTAGCGTCAG TERM 1652 1482315 - 1482286 - R 100 -16.5 -2.52676 | opp_overlap 1482285 1482282 CATGCTGTCAATTGA CGCACCGGGTGAT GACA ACCACCCGGTGCA CGATTTTATTAGCGT YPN_1300 1483894 - 1482335 - | exopolyphosphatase TERM 1653 1482827 - 1482839 + g 71 -6.3 -4.37092 | overlap 1482823 TTCCAGTTGGGGCTG TACCA GCT TGGTA TTTTGTGCCAACCAT YPN_1301 1485968 - 1483905 - | polyphosphate kinase TERM 1654 1487179 - 1487169 - gH 79 -8.2 -4.09685 | opp_overlap 1487168 TTTGATGTGCGAAAA GGGC CAA GCCC ATCGTTCCATTTGAC TERM 1655 1487557 - 1487530 - gH 71 -9.2 -3.06696 | opp_overlap 1487529 1487556 GTTCTGCCGAAGAGA GCTATCAGGCCA AATT TAGCCTGATACC GATTATCTTCGGTAC YPN_1302 1486239 - 1487978 + | phosphate transport system permease YPN_1303 1487884 - 1488471 + | phosphate transport system permease TERM 1656 1489134 - 1489119 - g 70 -3.2 -4.77173 | CGGTTACAAAAGAAA CGGC TGCAAATT GCCG GAGATTTAGACAGCA YPN_1304 1488471 - 1490183 + | phosphate transport system permease YPN_1305 1490211 - 1491023 + | phosphate transport ATP-binding protein YPN_1306 1491251 - 1491631 + | hypothetical protein TERM 1657 1491973 - 1491983 + G 74 -6.8 -4.37658 | AAGGTGTTATTGGCT TGCC TGG GGCA TTTTATGACACAATT TERM 1658 1492106 - 1492116 + G 74 -2.4 -5.06414 | opp_overlap 1492094 1492092 ATACCTGGTCTCAAC AGGC ATG GCCC TTTTTCTTACAGCAC YPN_1307 1491607 - 1492440 + | hypothetical protein TERM 1659 1492529 - 1492510 - T 88 -10 -4.20768 | ACGGGGAAGAAACAA TTGGGGCC ATCT GACCCCAA CGTATTAAGCATTTT YPN_1308 1493079 - 1492534 - | spermidine acetyltransferase purN 1493946 - 1493308 - | phosphoribosylglycinamide formyltransferase TERM 1660 1493759 - 1493747 - G 76 -7.7 -4.36262 | AGAGCCAGATCAAAA CTGAC GCG GTCAG TAAAAGCCTTGGCAT YPN_1310 1495104 - 1494061 - | phosphoribosylaminoimidazole synthetase upp 1495501 - 1496127 + | uracil phosphoribosyltransferase TERM 1661 1496136 - 1496153 + F 100 -8.4 -5.24129 | opp_overlap 1496136 TAAATAACGATGATA GCCGAC GTGAAA GTCGGC TTTTTTGTGCCCAGA TERM 1662 1496172 - 1496190 + F 100 -16 -3.07307 | opp_overlap 1496172 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1663 1496190 - 1496172 - f 100 -16 -4.36914 | opp_overlap 1496172 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1312 1496303 - 1496761 + | transposase for the IS1541 insertion element TERM 1664 1496839 - 1496863 + F 88 -9.9 -4.15788 | opp_overlap 1496842, overlap 1496841 1496842 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCACCAAATT TERM 1665 1496841 - 1496861 + F 100 -12.5 -3.6761 | opp_overlap 1496842, overlap 1496839 1496842 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCACCAAA TERM 1666 1496842 - 1496860 + F 100 -16 -2.80244 | opp_overlap 1496842, overlap 1496841 1496839 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCACCAA TERM 1667 1496860 - 1496842 - f 100 -16 -4.8048 | opp_overlap 1496842 1496841 1496839 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCACCAA YPN_1313 1496937 - 1497656 + | DNA replication initiation factor YPN_1314 1498224 - 1497868 - | arsenate reductase YPN_1315 1499815 - 1498331 - | hypothetical protein TERM 1668 1500341 - 1500362 + G 70 -8.7 -3.63897 | overlap 1500339 CGTATTGGTTGTTCA CGATCCTGG GCGG CCAGTATCG TATTTGTGCTATTTG TERM 1669 1500719 - 1500732 + G 74 -9.5 -3.53091 | GTGCGCCGTGTTTTG CCGCG TAAC CGCGG TTTGGCCGGGCAGGT YPN_1316 1500146 - 1501210 + | membrane protein YPN_1317 1501472 - 1501299 - | hypothetical protein YPN_1318 1501486 - 1501632 + | hypothetical protein YPN_1319 1501810 - 1502505 + | hypothetical protein YPN_1320 1502509 - 1502928 + | hypothetical protein TERM 1670 1503115 - 1503130 + T 100 -10.4 -4.34711 | opp_overlap 1503117 TGTCAATAACCTCAA GAGCGC CAGA GCGCTC TTTTCCGTTAATTTT TERM 1671 1503196 - 1503213 + T 72 -9.9 -2.88768 | overlap 1503195 1503198 TTGGCGTAAGTAGTC CATCACG ATAT CGTGATG ATTATTAGTCTTGAA bcp 1503642 - 1503172 - | thioredoxin-dependent thiol peroxidase gcvR 1504214 - 1503645 - | glycine cleavage system transcriptional repressor TERM 1672 1504082 - 1504068 - G 71 -6.4 -4.36554 | CAGCAGCATAATAAA GGTGAA CTC CTCACC GAACATAGCCAGCCG TERM 1673 1504279 - 1504268 - H 93 -2.2 -6.15717 | TAAACATAAAAAAAA CCTG CTGC CAAG CGCTTACAACACAGT YPN_1323 1504361 - 1505260 + | dihydrodipicolinate synthase TERM 1674 1505947 - 1505914 - g 82 -10.9 -3.86822 | GAAGGTTTGGATAAA GTGCGGGCTGACAGC GAGA GCAGTCAGGCCTCAC GTAAAGTCGGTACGC YPN_1324 1505278 - 1506336 + | lipoprotein TERM 1675 1506362 - 1506339 - f 100 -13.2 -5.18371 | opp_overlap 1506339 1506344 CGCGATAAAATAAAA CCAAAGGGGC TTCG GCCCCTTTAG TTATTGTGCCCAGAA TERM 1676 1506339 - 1506362 + F 88 -11 -3.78934 | opp_overlap 1506339, overlap 1506344 CGCGATAAAATAAAA CCAAAGGGGC TTCG GCCCCTTTAG TTATTGTGCCCAGAA TERM 1677 1506344 - 1506357 + F 85 -9.5 -4.11664 | opp_overlap 1506339, overlap 1506339 TAAAATAAAACCAAA GGGGC TTCG GCCCC TTTAGTTATTGTGCC TERM 1678 1506380 - 1506398 + F 100 -16 -3.07307 | opp_overlap 1506380 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1679 1506398 - 1506380 - f 100 -16 -4.37092 | opp_overlap 1506380 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1325 1506511 - 1506969 + | transposase for the IS1541 insertion element TERM 1680 1507047 - 1507071 + F 100 -9.9 -4.49556 | opp_overlap 1507050, overlap 1507049 1507050 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTCATGACGA TERM 1681 1507049 - 1507069 + F 100 -12.5 -3.85603 | opp_overlap 1507050, overlap 1507047 1507050 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTCATGAC TERM 1682 1507068 - 1507050 - f 100 -16 -4.8048 | opp_overlap 1507049 1507047 1507050 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCATGA TERM 1683 1507050 - 1507068 + F 100 -16 -2.90639 | opp_overlap 1507050, overlap 1507049 1507047 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCATGA YPN_1326 1507117 - 1507830 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1684 1508431 - 1508444 + G 76 -5.9 -4.63218 | GTGGTACCGGTCAGT CGGTC ATGG GGCCG TTTTATTGCCCGGCA YPN_1327 1508049 - 1508915 + | hypothetical protein YPN_1328 1509009 - 1509461 + | hypothetical protein TERM 1685 1510352 - 1510364 + G 76 -3.3 -5.16237 | overlap 1510353 TACAGGGATATGAGG GCACG GGG CGTGG TTTTTTACTGAAATT TERM 1686 1510836 - 1510810 - g 73 -10.8 -3.29043 | overlap 1510811 1510813 AATCTGGTGGCACAA TCACTGGCCGCT CAT AGCGGGCAGTGG CAGGCACCAACGCTG TERM 1687 1510835 - 1510811 - g 81 -14.3 -2.57211 | overlap 1510810 1510813 ATCTGGTGGCACAAT CACTGGCCGCT CAT AGCGGGCAGTG GCAGGCACCAACGCT TERM 1688 1510833 - 1510813 - g 71 -11.1 -2.82623 | overlap 1510811 1510810 CTGGTGGCACAATCA CTGGCCGCT CAT AGCGGGCAG TGGCAGGCACCAACG YPN_1329 1509463 - 1511562 + | acetyltransferase YPN_1330 1511961 - 1511767 - | hypothetical protein YPN_1331 1512706 - 1512029 - | carboxypeptidase TERM 1689 1512627 - 1512603 - G 71 -7.9 -4.08767 | gap 1 TGCATTGCTTGAAAA GCCT-CAGCC GCCTGT GGCTGTAGGC GATGAGCGCCACTTA YPN_1332 1513830 - 1512703 - | succinyl-diaminopimelate desuccinylase TERM 1690 1513453 - 1513464 + g 71 -7.2 -3.96624 | opp_overlap 1513453 GGAGGTTATCATAAA GGCC AGGC GGCC TTTGTGGTCAGGGTG TERM 1691 1513464 - 1513453 - G 71 -7.2 -3.9712 | opp_overlap 1513453 GGAGGTTATCATAAA GGCC AGGC GGCC TTTGTGGTCAGGGTG YPN_1333 1514230 - 1513832 - | hypothetical protein YPN_1334 1514863 - 1514390 - | hypothetical protein TERM 1692 1514885 - 1514901 + H 71 -9.5 -2.96184 | overlap 1514884 1514887 CACACCGTGGCTTAT CAGCAAA CTG TTTGCTG CTTTAGATTTTGCTG TERM 1693 1515594 - 1515578 - g 73 -5.1 -4.74706 | opp_overlap 1515580 GGCAATATGGAAAAA CAAAGCC TAC GGCTCTA CTTACGAACCCGTTG TERM 1694 1516079 - 1516062 - g 71 -7.7 -4.03234 | opp_overlap 1516073 CTGCTCTCAGAGAAA GGCCAAA ATAT TCTGGCC AATCAGTCAGATATT YPN_1335 1515174 - 1516262 + | hypothetical protein TERM 1695 1516274 - 1516304 + F 70 -9.6 -2.84587 | overlap 1516274 ATAGTGGCTTTATCT GGGTGCGCTTGCCT TAT GGGCATGCGCAGTC CTTGGTTTTATCGGC TERM 1696 1516274 - 1516305 + F 81 -9.4 -3.75517 | gap 1, overlap 1516274 ATAGTGGCTTTATCT GGG-TGCGCTTGCCT TAT GGGCATGCGCAGTCC TTGGTTTTATCGGCT TERM 1697 1516504 - 1516518 + G 74 -2.1 -5.1471 | TCAAAGGTACTGAGT CTTGA TGCGT TCAGG TTTATTTTTTCTGAT YPN_1336 1516357 - 1518126 + | binding protein-dependent transport system, inner-membrane component YPN_1337 1518119 - 1519189 + | ABC-transporter, ATP-binding protein TERM 1698 1519413 - 1519424 + F 71 -2.2 -5.10497 | CTCACCGTTTAATAT CGCA TCAT TGTG TTTTTTCAGTGGCTT YPN_1338 1519667 - 1521340 + | sulfatase TERM 1699 1521355 - 1521341 - f 100 -12.8 -3.39895 | opp_overlap 1521339 1521338 1521350 1521352, overlap 1521350 CTTGGTATGAATTAA GCCGCC AAA GGCGGC AAGTATTTTTCTTGC TERM 1700 1521374 - 1521350 - f 73 -8.5 -3.58305 | opp_overlap 1521339 1521338 1521350 1521352, overlap 1521341 AATTAAGCCGCCAAA GGCGGCAAGTA TTT TTCTTGCCGTC TGTCTATCTCCATGA TERM 1701 1521350 - 1521374 + F 79 -10.7 -3.05993 | opp_overlap 1521341 1521350, overlap 1521339 1521338 1521352 AATTAAGCCGCCAAA GGCGGCAAGTA TTT TTCTTGCCGTC TGTCTATCTCCATGA TERM 1702 1521352 - 1521372 + F 74 -9.7 -3.08465 | opp_overlap 1521341 1521350, overlap 1521339 1521338 1521350 TTAAGCCGCCAAAGG CGGCAAGTA TTT TTCTTGCCG TCTGTCTATCTCCAT TERM 1703 1521788 - 1521761 - g 70 -9.2 -3.54543 | ATTGATGGCCCTAAA GAGTTACACGAT CGCT ACCGTGTGACTC GCTCAGGCAAAGGAT TERM 1704 1522408 - 1522422 + G 71 -5 -4.57073 | overlap 1522410 TGATCAGGACAGCGA TGGGAT GAA ATCCTA TTTTTGCGCAGGGTA YPN_1339 1521398 - 1522573 + | sulfatase modifier protein TERM 1705 1523161 - 1523139 - T 79 -6.9 -4.58283 | opp_overlap 1523139 GAATCCTCGCAAAAA GGCAGAACC GTAGA GGCACTGCC TTTTTTATTACCCGC TERM 1706 1523139 - 1523161 + T 87 -4.7 -5.4505 | opp_overlap 1523139 GAATCCTCGCAAAAA GGCAGAACC GTAGA GGCACTGCC TTTTTTATTACCCGC YPN_1340 1523875 - 1523327 - | hypothetical protein TERM 1707 1524113 - 1524094 - R 74 -7.8 -4.01564 | overlap 1524095 1524097 TAAAATAGCCAGAAA GTAGGGCG GGGA CGCCCTAG GGTGAGTATTGCGCG TERM 1708 1524112 - 1524095 - R 83 -11.3 -2.99854 | overlap 1524094 1524097 AAAATAGCCAGAAAG TAGGGCG GGGA CGCCCTA GGGTGAGTATTGCGC TERM 1709 1524110 - 1524097 - R 71 -9.5 -3.0386 | overlap 1524095 1524094 AATAGCCAGAAAGTA GGGCG GGGA CGCCC TAGGGTGAGTATTGC YPN_1341 1524748 - 1524164 - | hypothetical protein TERM 1710 1524919 - 1524894 - R 76 -7.6 -4.20783 | ATCTGATGCAATAAA GCGGCATG GTTTTTTCGT CATGCCGC AGGGGAGAACCGACT YPN_1342 1528110 - 1524979 - | aminoglycoside/multidrug efflux system TERM 1711 1527369 - 1527384 + g 70 -9 -3.5511 | overlap 1527367 CCCGTAGCGTAATTT CCCGAA ACTC TTCGGG TGTTTGTAGCTGGGA YPN_1343 1528525 - 1528803 + | hypothetical protein TERM 1712 1528801 - 1528821 + T 86 -2.6 -5.79595 | opp_overlap 1528801 1528804, overlap 1528804 TTAGCGGCCATTAAA TAGTGACA ACGGA TGTCAGTA TTTTTTATTTTCCAA YPN_1344 1529445 - 1528816 - | nitrate/nitrite response regulator protein NarP TERM 1713 1529611 - 1529646 + H 80 -9 -3.9578 | CTATACCCGTCATAC TTCAAGTTGCAGGGGG CTGT CTTCCTGCCACTCGAA TTATTTAGCGTATGT TERM 1714 1529979 - 1529946 - H 73 -2.6 -5.11613 | opp_overlap 1529949, overlap 1529934 AGATTATCTAAAAAA TAATTATCAAAGCA TCGTCT TGTTTTGGTAATTA TTCCCGTTAAATGAA TERM 1715 1530482 - 1530493 + G 71 -5.8 -4.38154 | overlap 1530489 ATAGATTTTCAACGT GCTG AGTG CAGC TTTTGTCAGGCCTGT YPN_1345 1530278 - 1530781 + | ferredoxin-type protein NapF YPN_1346 1530771 - 1531037 + | assembly protein for periplasmic nitrate reductase YPN_1347 1531034 - 1533526 + | nitrate reductase TERM 1716 1533821 - 1533789 - g 80 -2 -5.38549 | overlap 1533791 1533806 CCTAAACAACAAAAA CGGATGGC-GCTGAAC TAT GTTAACCAGCCA-CCG ATGATCCCACATAGC napB 1533609 - 1534076 + | diheme cytochrome c550 TERM 1717 1534052 - 1534064 + F 78 -9.1 -3.76224 | TGGTAATAGCTTCCA GCCAG CAC CTGGC TTTGGTCAGTAACCG YPN_1349 1534104 - 1534703 + | cytochrome c-type protein NapC TERM 1718 1534805 - 1534777 - f 77 -10.2 -3.22774 | opp_overlap 1534777 GAGAGTGATGATTAA CGCCCTGTGGAC TTTGC GTCGGCAGGGCG TTTTTACTGCAGCAG TERM 1719 1534777 - 1534805 + F 100 -12.4 -4.72272 | opp_overlap 1534777 GAGAGTGATGATTAA CGCCCTGTGGAC TTTGC GTCGGCAGGGCG TTTTTACTGCAGCAG YPN_1350 1534860 - 1535483 + | hypothetical protein TERM 1720 1535777 - 1535760 - g 84 -11.3 -3.90112 | opp_overlap 1535759 1535758, overlap 1535744 GTTTCGCCAACCAAA CCGTTGG CGAC CCAACGG GATTTGGCACTGGCG TERM 1721 1536537 - 1536505 - g 71 -7 -4.13728 | gap 1, opp_overlap 1536511, overlap 1536496 CAGAGATGGTGAAAA CCATGGCACCGAATC CGTT GATTCTG-GCCCTGG CAAACCCGGAACCGG YPN_1351 1535679 - 1537958 + | malic enzyme YPN_1352 1538567 - 1538109 - | hypothetical protein TERM 1722 1538351 - 1538364 + g 91 -5.3 -5.40072 | GTGGGATATCTGCGG TGATC ACCA GATCA TTTTTTTCCACCCGC YPN_1353 1539496 - 1538567 - | coproporphyrinogen III oxidase TERM 1723 1538640 - 1538660 + g 77 -9.7 -3.65812 | AACGCGGCTTCTGCA CTATCTGCC TCT GGCTGATAG TTATATTCCCAGCGC TERM 1724 1538962 - 1538936 - G 73 -2.8 -5.04385 | overlap 1538949 CAGATCGTCAAAAAA CAGGCCGCCAAT ACC ACGGGCTTCCTG GCGATGTTTAATATA TERM 1725 1539055 - 1539073 + g 70 -8.9 -3.61715 | GGCTATGCGCTACCT GATGCCA ATGAA TGGCATC TTCTTCAAAGCCGTA YPN_1354 1539779 - 1540204 + | putative acetyltransferase YPN_1355 1540571 - 1540386 - | hypothetical protein YPN_1356 1540677 - 1541093 + | hypothetical protein TERM 1726 1541167 - 1541140 - T 100 -14.2 -5.53991 | opp_overlap 1541139 TATTGAGCAAAAAAA TGGTCTCCCGCA TTAT CGCGGGAAACCA CTCATCTGGTATGTT YPN_1357 1543395 - 1541185 - | autotransporter TERM 1727 1541765 - 1541753 - G 75 -9.1 -3.96216 | CTGTTATCGAAATAA GTGCC GTA GGCAC CCAAGCTATAACTAT YPN_1358 1544364 - 1543951 - | hypothetical protein YPN_1359 1544723 - 1545334 + | hypothetical protein TERM 1728 1545365 - 1545381 + F 76 -9.4 -3.4758 | TGCTATTATCACTTG GGCGCT ACCTC AGCGCC TTAATATTATTCCTA TERM 1729 1545423 - 1545446 + F 74 -6.8 -4.39386 | CTCTCTCTTCCCGCT TTATTTTGCG TTGT CGCAAGGTAA TTTTAATCGTTTCAG TERM 1730 1546365 - 1546355 - g 70 -8.2 -3.72576 | CTGCGTTTTAGCAAA CCGG TTA CCGG CAGCTATTATTTTGC YPN_1360 1545512 - 1546411 + | hypothetical protein TERM 1731 1546449 - 1546471 + T 100 -13.5 -4.18044 | AAATATATCACCGTT GGCCGGATT GATGA AATCCGGCC TTTCATTATTTATCA YPN_1361 1547402 - 1546509 - | N-acetylneuraminate lyase YPN_1362 1548166 - 1547465 - | N-acetylmannosamine-6-phosphate 2-epimerase YPN_1363 1549499 - 1548372 - | hypothetical protein TERM 1732 1549351 - 1549377 + g 72 -3.6 -4.89521 | opp_overlap 1549351, overlap 1549352 TCTACGGCAATACCA CGCTGTTCCC CTTCTCC GGGAACTGCA TTTTCTTTCCACTCT YPN_1364 1549768 - 1550640 + | N-acetylmannosamine kinase YPN_1365 1550722 - 1551192 + | hypothetical protein TERM 1733 1551244 - 1551257 + F 100 -9.5 -5.85737 | TTTTTGACCTTTTTA CCCGG TTTT CCGGG TTTTTTTATTGATCT TERM 1734 1551803 - 1551819 + G 72 -3.7 -4.88228 | overlap 1551792 1551803 1551805 CAAAGTGCTGCGCCC TGCGGAT CGC ATCTGTA TTTTTGGTGTTGGCT YPN_1366 1551381 - 1552259 + | transcriptional regulator TERM 1735 1552679 - 1552691 + F 76 -7.7 -4.23615 | opp_overlap 1552679 1552678 CTTATACACTCAAAT GGAGT TTT ACTCC TTTATTGAATGTCAT TERM 1736 1553067 - 1553083 + G 74 -8 -3.99405 | TGGCCTGACACTGAT TCAGGC GACCA GCCTGA TTTCTGCTGCCTTCA YPN_1367 1552864 - 1554396 + | putative sialic acid transporter TERM 1737 1554444 - 1554465 + F 100 -12.3 -6.32017 | gap 1 TAAACTGTTTTTCTT GCCCGGTGCG CGA CG-ACCGGGC TTTTTTTTATTTGTT YPN_1368 1554711 - 1555748 + | thiosulfate transporter subunit TERM 1738 1556482 - 1556524 + G 91 -12.6 -3.96618 | TGATTACCCGGCAGC CAGCGCCATTGCCTCGGTGA TTC TGGCCGTGTCACTGGCGCTG TTGTTTAGCATTAAC YPN_1369 1555748 - 1556581 + | sulfate/thiosulfate transporter subunit TERM 1739 1556812 - 1556824 + G 70 -4.8 -4.63527 | GCATTGATAACCGTG CCAG TGAAC CTGG TTTTTGGGGTGGTGC cysW 1556581 - 1557456 + | sulfate/thiosulfate transporter permease subunit TERM 1740 1558127 - 1558137 + G 74 -2.4 -5.10163 | GAAGTCTGGCGTGAA CCGG CAA CCCG TTTTGTTTTGGAATT YPN_1371 1557446 - 1558537 + | sulfate/thiosulfate transporter subunit cysM 1558708 - 1559586 + | cysteine synthase B YPN_1373 1559831 - 1561063 + | hypothetical protein YPN_1374 1562151 - 1561444 - | two-component response regulator YPN_1375 1563692 - 1562148 - | two-component sensor histidine kinase TERM 1741 1563735 - 1563710 - R 93 -11.9 -3.66378 | overlap 1563711 CATATCCCATGTAAA CGCTGAGCCAG CGTA CTGACTCAGCA TAAATGAACTTTTAT TERM 1742 1563734 - 1563711 - R 91 -13.2 -2.79505 | overlap 1563710 ATATCCCATGTAAAC GCTGAGCCAG CGTA CTGACTCAGC ATAAATGAACTTTTA TERM 1743 1563839 - 1563813 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 1563822, overlap 1563814 1563829 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1744 1563840 - 1563814 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 1563822, overlap 1563813 1563829 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPN_1376 1565343 - 1563925 - | hypothetical protein YPN_1377 1566051 - 1567232 + | aminotransferase YPN_1378 1567266 - 1567457 + | hypothetical protein YPN_1379 1567454 - 1568485 + | peptidase TERM 1745 1569008 - 1569040 + G 70 -9.1 -3.50393 | overlap 1569010 ACATTCTTGGGGGGC AGTGGCTGGGCTTAT GGA AAAGGCCCAGCCATA TTATATACGCTCACC TERM 1746 1569010 - 1569038 + G 83 -13.9 -3.32698 | overlap 1569008 ATTCTTGGGGGGCAG TGGCTGGGCTTAT GGA AAAGGCCCAGCCA TATTATATACGCTCA TERM 1747 1569718 - 1569735 + G 71 -5.5 -4.45117 | opp_overlap 1569714, overlap 1569714 CCCTGACTTAACCGG GCCAGAT GTTG ACCTGGC TTTATTTGAAATATC YPN_1380 1568822 - 1570282 + | permease TERM 1748 1571242 - 1571270 + G 71 -11 -2.81584 | gap 1, opp_overlap 1571221, overlap 1571241 GCAACGTATATTCCA CTGGCCTGGCCGG CTAA CCGGCAAGGC-AG ATTATTGGCTGATAT YPN_1381 1570342 - 1571988 + | pyridine nucleotide-disulphide oxidoreductase TERM 1749 1572021 - 1572008 - T 74 -4.5 -4.83615 | TATTTTGTATAAAAA GGGCA TCTA TACCC AAAATAATTCGCGTT TERM 1750 1572199 - 1572186 - T 86 -6.7 -4.9645 | ATGATAACAATAAAA GGTCA CGGA TGACC TATCACGATGAAAGC YPN_1382 1574279 - 1572243 - | ABC transporter, ATP-binding protein YPN_1383 1575488 - 1574283 - | HlyD family secretion protein TERM 1751 1575918 - 1575884 - g 83 -2.7 -5.41746 | AAGTGCGTAAAAAAA GCCGTTTGCCGATCA TTATG TTAACGGCTAAAGGC GACAATATTGATCGG YPN_1384 1575676 - 1576359 + | two-component system response regulator TERM 1752 1576668 - 1576622 - g 100 -10.3 -5.27923 | opp_overlap 1576615 1576613 1576622, overlap 1576624 GAAGCGGACAAAAAA TATTTTTCTGTCTTACCTGCC GAGAT GGCAGATACGGCAGAAAAAGA TATATCGGCTCTCTC TERM 1753 1576622 - 1576668 + G 73 -11 -2.91239 | opp_overlap 1576622 1576624, overlap 1576615 1576613 GAAGCGGACAAAAAA TATTTTTCTGTCTTACCTGCCG AGA TGGCAGATACGGCAGAAAAAGA TATATCGGCTCTCTC TERM 1754 1576666 - 1576624 - g 100 -12.9 -4.26475 | opp_overlap 1576615 1576613 1576622, overlap 1576622 AGCGGACAAAAAATA TTTTTCTGTCTTACCTGCC GAGAT GGCAGATACGGCAGAAAAA GATATATCGGCTCTC YPN_1385 1576385 - 1577734 + | two-component system sensor kinase TERM 1755 1577836 - 1577853 + F 100 -9.8 -5.60993 | opp_overlap 1577836 TGGCCGGCAGCAAAA CGGCGC CCTTGA GCGCCG TTTTTTTGTGCCCAG TERM 1756 1577853 - 1577836 - f 100 -10.5 -4.25104 | opp_overlap 1577836 TGGCCGGCAGCAAAA CGGCGCC CTTG AGCGCCG TTTTTTTGTGCCCAG TERM 1757 1577873 - 1577891 + F 100 -16 -3.07307 | opp_overlap 1577873 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1758 1577891 - 1577873 - f 100 -16 -4.36914 | opp_overlap 1577873 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1386 1578004 - 1578462 + | transposase for the IS1541 insertion element TERM 1759 1578540 - 1578564 + T 93 -9.9 -4.34488 | opp_overlap 1578543, overlap 1578542 1578543 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTATCGGTATC TERM 1760 1578542 - 1578562 + T 100 -12.5 -3.76888 | opp_overlap 1578543, overlap 1578540 1578543 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTATCGGTA TERM 1761 1578561 - 1578543 - T 100 -16 -4.8048 | opp_overlap 1578542 1578540 1578543 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTATCGGT TERM 1762 1578543 - 1578561 + T 100 -16 -2.8541 | opp_overlap 1578543, overlap 1578542 1578540 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTATCGGT YPN_1387 1579114 - 1578605 - | glucose-specific PTS system component TERM 1763 1579032 - 1579066 + g 82 -3.5 -5.34555 | opp_overlap 1579034 TTGACGATTTCACCA GACAGCGGTGCAACT ATCTC AATAACACTGCTGTC TTTTTTATCATCTGA YPN_1388 1580890 - 1579163 - | phosphoenolpyruvate-protein phosphotransferase TERM 1764 1579563 - 1579542 - G 70 -10.3 -3.01712 | opp_overlap 1579547, overlap 1579547 TCGTTTGTCCCAATA CTAAAGAAG TCAA CTTCTTTAG CTAAATGGCGAGCGA TERM 1765 1579824 - 1579835 + g 81 -5.8 -5.00196 | CGAATAGCACGCCAG CCCA GGAA TGGG TTTTCTTCTTTCGGC YPN_1389 1581196 - 1580939 - | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) TERM 1766 1581640 - 1581675 + r 100 -16.4 -3.74693 | opp_overlap 1581627 1581650, overlap 1581650 AACTTTGATGTACTC TACAAAAAAAGCACCC CAAA GGGTGCTTTTTTTGCA TTTAGTGCGGTAGCC TERM 1767 1581650 - 1581665 + r 100 -10.4 -5.58209 | opp_overlap 1581627 1581650, overlap 1581640 TACTCTACAAAAAAA GCACCC CAAA GGGTGC TTTTTTTGCATTTAG TERM 1768 1581665 - 1581650 - R 100 -10.4 -5.626 | opp_overlap 1581650 1581640, overlap 1581627 TACTCTACAAAAAAA GCACCC CAAA GGGTGC TTTTTTTGCATTTAG YPN_1390 1582663 - 1581695 - | cysteine synthase A TERM 1769 1582454 - 1582472 + g 84 -13.2 -3.41073 | overlap 1582452 AACACCTGTATTCCC GCTGGTTG GTT CAACCAGC TCTTTGCCTGCGGTC TERM 1770 1582808 - 1582790 - R 100 -14.6 -3.97139 | TAATCCCAATAACAA GGGCGTGT TAG ACACGCCC ACCGAAAATGATCAT YPN_1391 1583554 - 1582820 - | putative sulfate transport protein CysZ TERM 1771 1584289 - 1584277 - g 70 -4.8 -4.59773 | overlap 1584252 CCGCATGTGGAAAAA CCTG CACAT CAGG TGGCTCCACAACAGC YPN_1392 1583803 - 1584789 + | cell division protein ZipA TERM 1772 1584840 - 1584856 + F 100 -10.8 -5.5762 | opp_overlap 1584835 TCGAATTAACCCGAA CCCCCG CATGC CGGGGG TTTTTTATCTTTGGT TERM 1773 1585372 - 1585399 + G 70 -3.2 -4.82901 | CATGGGGATAATGTC CCGCGGCGCGTA GAAG TCCGTGGCGAGG TTTTTATGCCACAAG TERM 1774 1585664 - 1585682 + G 70 -2.4 -4.91511 | opp_overlap 1585654 TGAAACTCTGCACTG GCAGTGAT CAG GTTATTGC TTTTTATCGTCAAAT ligA 1584880 - 1586892 + | NAD-dependent DNA ligase LigA YPN_1394 1586912 - 1587127 + | hypothetical protein YPN_1395 1587575 - 1587228 - | hypothetical protein TERM 1775 1587387 - 1587398 + g 70 -2.2 -5.03945 | AATTTGGGTCTCAAT CAGT TGCT GCTG TTTTTGTAATTCTTC YPN_1396 1588312 - 1587707 - | hypothetical protein TERM 1776 1588214 - 1588203 - G 73 -5.8 -4.44245 | opp_overlap 1588210, overlap 1588204 1588205 AGATTACGGACAAAA CCTG CCGC CAGG CACCACTGGTTTAAT TERM 1777 1588501 - 1588473 - R 100 -14.7 -3.16068 | opp_overlap 1588478 1588480, overlap 1588480 GTCGGAACTGAAAAG CAAAAAACCGGCC AAA GGCCGGTCTTTTA AAGGGTGGTGGAGCT TERM 1778 1588478 - 1588496 + r 91 -10.2 -4.10161 | opp_overlap 1588473 1588480, overlap 1588480 AACTGAAAAGCAAAA AACCGGCC AAA GGCCGGTC TTTTAAAGGGTGGTG TERM 1779 1588480 - 1588494 + r 100 -12.8 -3.64716 | opp_overlap 1588473 1588480, overlap 1588478 CTGAAAAGCAAAAAA CCGGCC AAA GGCCGG TCTTTTAAAGGGTGG TERM 1780 1588494 - 1588480 - R 100 -12.8 -5.46698 | opp_overlap 1588480 1588478, overlap 1588473 CTGAAAAGCAAAAAA CCGGCC AAA GGCCGG TCTTTTAAAGGGTGG TERM 1781 1588952 - 1588920 - R 95 -11.3 -3.86252 | opp_overlap 1588927, overlap 1588924 1588926 1588927 TGTTATCAAATATAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 1782 1588948 - 1588924 - R 100 -9.9 -4.53047 | opp_overlap 1588927, overlap 1588920 1588926 1588927 ATCAAATATAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 1783 1588946 - 1588926 - R 100 -12.5 -3.85554 | opp_overlap 1588927, overlap 1588924 1588920 1588927 CAAATATAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 1784 1588945 - 1588927 - R 100 -16 -2.89706 | opp_overlap 1588927, overlap 1588926 1588924 1588920 AAATATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 1785 1588927 - 1588945 + r 100 -16 -4.8048 | opp_overlap 1588926 1588924 1588920 1588927 AAATATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_1397 1589484 - 1589026 - | transposase for the IS1541 insertion element TERM 1786 1589597 - 1589615 + r 100 -16 -4.36914 | opp_overlap 1589597 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 1787 1589615 - 1589597 - R 100 -16 -3.07307 | opp_overlap 1589597 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 1788 1589652 - 1589634 - R 100 -12.4 -5.24129 | TCTGGGCACAAAAAA GGCGACCA GAG TGGCCGCC TGATAACACGGAAAA gltX 1591092 - 1589677 - | glutamyl-tRNA synthetase TERM 1789 1592300 - 1592287 - R 84 -3.7 -5.4492 | opp_overlap 1592287 TATAGATACAAAAAA GGTGC CGTA GCGCC TCGTTAAGCGATCGT YPN_1399 1593510 - 1592326 - | nucleoside permease TERM 1790 1593876 - 1593862 - H 90 -5.8 -5.5112 | TCTACTAACAAAAAA GATAAT TCC ATTATC ACAAATGCGCTTGAT TERM 1791 1594729 - 1594739 + G 82 -8.2 -4.56914 | overlap 1594727 GCGATGATGGCAACC GCCG CTG CGGC TTTTCATTTCAATGG YPN_1400 1593961 - 1595190 + | manganese transport protein MntH TERM 1792 1595247 - 1595257 + T 71 -6.8 -4.16016 | opp_overlap 1595244 ATTCCATGAAAACCC GCCT GAC AGGC TTTATTGAGCGATGA YPN_1401 1595696 - 1595283 - | hypothetical protein YPN_1402 1596856 - 1595867 - | ion channel protein YPN_1403 1597870 - 1596992 - | LysR family transcriptional regulator TERM 1793 1597048 - 1597059 + g 100 -7.2 -5.40072 | overlap 1597041 GCCAATAGCCAGCAG GCCC CGGT GGGC TTTTTTTCGACCAAA YPN_1404 1597973 - 1598449 + | hypothetical protein TERM 1794 1599154 - 1599140 - g 71 -7.8 -3.98981 | opp_overlap 1599139 AATAGTGAAGAAGAA GACCAG ATT CTGGCC GTATTGCGCCAGGAG glk 1598630 - 1599601 + | glucokinase TERM 1795 1599663 - 1599633 - T 84 -9.8 -3.78934 | opp_overlap 1599635 GTGGGCGCAGAAGAA TATCTGCCGGGA GGATAAG TTCCGGCAGATA TGATGCGGAAGAAGG TERM 1796 1599635 - 1599661 + T 75 -10.2 -2.78384 | opp_overlap 1599633 GGGCGCAGAAGAATA TCTGCCGGGA GGATAAG TTCCGGCAGA TATGATGCGGAAGAA YPN_1406 1600926 - 1599679 - | hypothetical protein TERM 1797 1599711 - 1599721 + g 70 -3.2 -4.77438 | ACTGCTGTTTACCTA TCTC AGT GAGG TTTTTGATGGTGGCT TERM 1798 1600400 - 1600426 + g 70 -9.4 -3.59293 | opp_overlap 1600400, overlap 1600396 GCATAGGTGACGACA CGGTTAGCATCA AAA TGTTGCTTACCG TTGCTTTCGGTTTGC TERM 1799 1600682 - 1600692 + g 73 -3.2 -4.91429 | CCGAGAATGGCACAA CAGC CGC GTTG TTTTATTTGCGCTTT TERM 1800 1601147 - 1601129 - H 70 -7.4 -3.88787 | overlap 1601119 1601131 GGATATGTTCATAAA CAGACCAT CTG ATGGTCAG CGTCGCTCGGACGGT TERM 1801 1601145 - 1601131 - H 71 -8.6 -3.53174 | overlap 1601129 ATATGTTCATAAACA GACCAT CTG ATGGTC AGCGTCGCTCGGACG TERM 1802 1601633 - 1601658 + G 87 -4.7 -5.40474 | GGTGCGCAAGTGCGT TCAGTGCCGTT GACC GAAGGCATTGA TTTTTTTGGCGAGCT TERM 1803 1601732 - 1601763 + G 100 -7.4 -5.40474 | gap 1, opp_overlap 1601737 ATCCTCGGTTTTCCA TCCAACCCAACAGCG CAA TG-TGTTGAGTTGGA TTTTTTTGAGCGAGT YPN_1407 1601192 - 1602427 + | aminotransferase YPN_1408 1602691 - 1603215 + | B-type cytochrome YPN_1409 1603741 - 1603310 - | hypothetical protein YPN_1410 1604331 - 1605002 + | lipoprotein YPN_1411 1604984 - 1605385 + | lipoprotein TERM 1804 1605643 - 1605633 - g 73 -3.2 -4.93288 | overlap 1605620 AACATTTAAACAAAA TGGC ATG ACCA ACGCGGGTGATATTA YPN_1412 1605382 - 1606038 + | putative lipoprotein TERM 1805 1606246 - 1606233 - T 71 -6.7 -4.13767 | GGCTGCACCCCAAAA GTTGG ATAC CCAAC TGAATAAGGTGCAGT YPN_1413 1606853 - 1606284 - | iron-sulphur protein YPN_1414 1607446 - 1606850 - | hypothetical protein TERM 1806 1607892 - 1607873 - R 77 -6.4 -4.60487 | overlap 1607876 GATTAGCCGCAAAAA TAGCCGCT AATC AGCGGGTA AATCACCACATGGAA YPN_1415 1608704 - 1607928 - | dimethyl sulfoxide reductase chain C protein YPN_1416 1609323 - 1608706 - | dimethyl sulfoxide reductase chain B protein YPN_1417 1611761 - 1609335 - | dimethyl sulfoxide reductase chain A protein TERM 1807 1610292 - 1610268 - G 74 -4.3 -4.75288 | CCAGACCAAAATAAA TTCGCACAATG ACT CATCTTGCAAA ATAGTATTGGTTTTA TERM 1808 1610368 - 1610378 + g 86 -3.2 -5.63012 | CAGAGAAACTTAATA TTGG TAT CCAG TTTTTCTTTATTTTT YPN_1418 1612592 - 1613440 + | hypothetical protein TERM 1809 1613661 - 1613642 - T 85 -9.3 -4.11346 | ACACGTAAATAATAA GGGATGG TGTAGG CCATCCC CGAATAAATTAATAC YPN_1419 1614155 - 1613670 - | hypothetical protein TERM 1810 1614328 - 1614353 + H 79 -10.7 -3.00986 | overlap 1614324 AATTATAATGGTGAG TGTTTTGTTTT TTTT AAAACAAAACA TAATTTAATGTGGTT YPN_1420 1614625 - 1615140 + | hypothetical protein YPN_1421 1616262 - 1615213 - | iron(III)-transport ATP-binding protein YPN_1422 1617845 - 1616259 - | iron(III)-transport system permease TERM 1811 1616478 - 1616466 - G 70 -9.1 -3.50737 | overlap 1616462 AGCCAGAAAGACTAA TGCGG CAC CCGCA GCGGCGCCGGGAGCA TERM 1812 1617126 - 1617111 - G 72 -8.2 -3.90464 | CCCCAAACAACATAA GGCGAG TACT CCCGCC AGCATGTTAGCGGCG TERM 1813 1617439 - 1617425 - G 73 -3.4 -4.99035 | overlap 1617426 TCACCGAGATAAAAA CGCCGG CGG CCAGCC CATTCATTGAGGGGA TERM 1814 1617497 - 1617487 - G 74 -6.8 -4.386 | TAACTTTGTACAAAA GCAG GTA CTGC CAGTGGTGCTATTGC TERM 1815 1617888 - 1617874 - R 71 -8.5 -3.53091 | ACTCGGTTTGTTAAA CGCCC GCAGG GGGCG GAGTAAAACGGATTA YPN_1423 1618920 - 1617901 - | iron(III)-binding periplasmic protein TERM 1816 1618418 - 1618455 + g 79 -11.3 -3.54543 | gap 1, overlap 1618429 1618451 GCCTGGAAGTCAGCA CCGGAGGGGGAA-GCTGC CCA GCGGCCTTTCCACTCTGG TTTCGCCAGGTCCAT TERM 1817 1619341 - 1619358 + G 80 -3.3 -5.26875 | opp_overlap 1619343, overlap 1619342 1619343 TGCAACCCCGTCAGA TAGCCCT GTTC AGGGCGG TTTTTTGCTTGAGCC YPN_1424 1619249 - 1620343 + | murein hydrolase B TERM 1818 1620381 - 1620353 - f 100 -11.7 -4.8083 | opp_overlap 1620353 CAATAGCATGAAAAA GAGGGCTGCATTA GGG TTATGCCGCCCTC TTTTCTTAACGATAT TERM 1819 1620353 - 1620381 + F 100 -11.7 -4.65078 | opp_overlap 1620353 CAATAGCATGAAAAA GAGGGCTGCATTA GGG TTATGCCGCCCTC TTTTCTTAACGATAT YPN_1425 1621609 - 1622211 + | LuxR family regulatory protein TERM 1820 1622555 - 1622518 - T 83 -12.2 -2.73994 | opp_overlap 1622521, overlap 1622515 ATTCTTCCAATACGA CCACGTCATGCTAAGT CGGGTT ATTTAGCATGACGTGA TATCGCTCAAAAATT TERM 1821 1622521 - 1622552 + T 88 -12.5 -2.64616 | opp_overlap 1622518 1622515 CTTCCAATACGACCA CGTCATGCTAAGT CGGGTT ATTTAGCATGACG TGATATCGCTCAAAA YPN_1426 1623051 - 1622569 - | hypothetical protein YPN_1427 1624730 - 1623048 - | hypothetical protein TERM 1822 1623843 - 1623861 + g 85 -3.8 -5.40072 | overlap 1623845 CAAGGTTGAGGCTAA GCTTGGTA TGA TGCCAAAC TTTTTTTCCAGCCAG TERM 1823 1624639 - 1624625 - G 76 -7.2 -4.34912 | opp_overlap 1624624 AAGTAATGAAAATAA CGTTAT TCC ATAACG CATTTCCCTTAAAAT YPN_1428 1625483 - 1624731 - | hypothetical protein YPN_1429 1626766 - 1625429 - | hypothetical protein TERM 1824 1625687 - 1625697 + gr 100 -5.4 -5.7946 | CACCTCTTTCTTTTC CACT TTT AGTG TTTTTTTATTCACAC TERM 1825 1625757 - 1625770 + gr 89 -2.4 -5.75342 | opp_overlap 1625757 GATGTGGGAAGATCA GTGA AGAAAC TCAC TTTTTTTTCACCCGC YPN_1430 1627837 - 1626806 - | fimbrial protein TERM 1826 1627506 - 1627524 + g 70 -9.6 -3.23853 | overlap 1627505 TTATTCCATGCAGGT TTGATGGC AAT GCCATCGA TATTCGTTGCAAAAA TERM 1827 1627630 - 1627642 + g 76 -5.5 -4.85599 | TTACTGCCAAACCTT GTGGT TGT GCCAC TTTTTCTAGGATAGG YPN_1431 1629025 - 1627844 - | hypothetical protein TERM 1828 1628278 - 1628298 + g 70 -9.7 -3.29511 | CTTCTGGGATCGGCA CCACGATAG GCG CTATCGGGG TTATCGCGGCATCAA YPN_1432 1630149 - 1629124 - | hypothetical protein TERM 1829 1629960 - 1630005 + g 74 -7.5 -4.26076 | gap 1 GAGAGAACGTCATGT GCGCACTTTGCCCGATGCGGAA GGC TTCCTGTTCAGGCAAGG-GCGC TTTTCCTGGCGCTGG YPN_1433 1632029 - 1630149 - | hypothetical protein TERM 1830 1634225 - 1634213 - g 70 -9.1 -3.54424 | overlap 1634195 1634196 CGGCACTTTGGTAAA GCGCA GGA TGCGC GTACTGAGCAGTTGA YPN_1434 1632812 - 1635487 + | Clp ATPase TERM 1831 1635644 - 1635613 - f 84 -3.8 -5.52096 | opp_overlap 1635613 AAAGGCAATAAAAAA TAGCTAGTATTGGC ATGA GCGAATATTAACTA TATATTTAATAAATC YPN_1435 1635688 - 1636233 + | frimbrial protein TERM 1832 1636344 - 1636295 - f 73 -10.1 -2.98493 | gap 1, opp_overlap 1636298 1636301, overlap 1636292 1636298 CGCAGCAGTAAAGCA TAACAG-CTTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAAGTCTGTTA TAAAGATAAGTCTGC TERM 1833 1636298 - 1636341 + F 89 -11.8 -3.31461 | gap 1, opp_overlap 1636298 1636295 1636292, overlap 1636301 AGCAGTAAAGCATAA CAG-CTTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAAGTCTG TTATAAAGATAAGTC TERM 1834 1636301 - 1636337 + F 93 -12.3 -3.17622 | opp_overlap 1636298 1636295 1636292, overlap 1636298 AGTAAAGCATAACAG CTTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAAG TCTGTTATAAAGATA YPN_1436 1636390 - 1637151 + | pili chaperone protein TERM 1835 1638316 - 1638303 - g 70 -8.1 -3.78312 | AAATTATTTATGAAA CGGTG GTCA CACCG GGAGCCTTTGAACTG YPN_1437 1637279 - 1638829 + | hypothetical protein TERM 1836 1638877 - 1638856 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_1438 1639291 - 1638851 - | transposase YPN_1439 1640058 - 1639336 - | transposase TERM 1837 1640761 - 1640771 + G 76 -8.2 -4.15565 | GCGGGCCCACGACTT GGCG ATG CGCC TTTTGCCATCATCAA YPN_1440 1640083 - 1641273 + | outer membrane fimbrial usher porin YPN_1441 1641258 - 1641866 + | fimbrial protein YPN_1442 1641971 - 1642495 + | hypothetical protein TERM 1838 1642803 - 1642789 - g 70 -8.6 -3.75024 | TTGCACCACCAAGAA TTCCAG TCT CTGGAA AGCGCATGGCGTGGG YPN_1443 1642519 - 1644021 + | hypothetical protein TERM 1839 1644500 - 1644510 + G 76 -5.4 -4.8622 | GGTTCAGGTAAAGCC TCTG TTT CAGA TTTTTGCTTCGCACA YPN_1444 1644263 - 1644832 + | hypothetical protein TERM 1840 1644880 - 1644858 - f 75 -9.1 -3.72893 | opp_overlap 1644858 CATGTCGCTATCAAA CTTGCCACC TTTGG GGTGGCAGG TTTTCTTAATAAGTG TERM 1841 1644858 - 1644880 + F 100 -12 -4.72497 | opp_overlap 1644858 CATGTCGCTATCAAA CTTGCCACCT TTG GGGTGGCAGG TTTTCTTAATAAGTG YPN_1445 1645085 - 1645645 + | hypothetical protein TERM 1842 1646909 - 1646893 - g 82 -3.6 -5.31456 | overlap 1646895 TGAATTGATAAAAAA TGGCCC CTTCT GGGACA AAGTTTCCAATGCTG YPN_1446 1645649 - 1646998 + | hypothetical protein TERM 1843 1647022 - 1647038 + G 79 -9.4 -4.25104 | AGTGATTTGAACCTT GGAGGC TCAAT GCCTCC TTTTGATAGAAGCAG YPN_1447 1646995 - 1647663 + | hypothetical protein TERM 1844 1647655 - 1647673 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_1448 1647677 - 1648699 + | transposase for insertion sequence IS100 TERM 1845 1648780 - 1648766 - g 77 -11.4 -3.3506 | overlap 1648757 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_1449 1648699 - 1649478 + | transposase/IS protein YPN_1450 1649606 - 1649758 + | outer membrane protein C2, porin TERM 1846 1649733 - 1649751 + T 71 -4.6 -4.58395 | CGGATGATGTTGTTG CGGTAA ACTTGAC TTACCG TTTTTAAGCAGTAGA TERM 1847 1649887 - 1649855 - T 70 -5.6 -4.3207 | gap 1, opp_overlap 1649863, overlap 1649857 1649863 ATAGAAAGATAGAAA GATAGAAAGGCGGGG GAAA CCCCGTCTTTTTA-C TGTGAGCTGTAAACC TERM 1848 1649886 - 1649857 - T 81 -9.3 -3.74227 | opp_overlap 1649863, overlap 1649855 1649863 AGAAAGATAGAAAGA TAGAAAGGCGGGG GAAA CCCCGTCTTTTTA CTGTGAGCTGTAAAC TERM 1849 1649880 - 1649863 - T 82 -8.3 -4.3207 | opp_overlap 1649863, overlap 1649857 1649855 ATAGAAAGATAGAAA GGCGGGG GAAA CCCCGTC TTTTTACTGTGAGCT TERM 1850 1649863 - 1649880 + T 100 -10.5 -4.80882 | opp_overlap 1649857 1649855 1649863 ATAGAAAGATAGAAA GGCGGGG GAAA CCCCGTC TTTTTACTGTGAGCT YPN_1451 1650829 - 1650023 - | N-formylglutamate amidohydrolase YPN_1452 1652046 - 1650826 - | imidazolonepropionase TERM 1851 1652201 - 1652179 - R 70 -7.1 -3.9009 | AACCTAGCCTATAAA TTCACTATC AGCAA GATAGCGAA TTCACAATTGCGTAA YPN_1453 1653017 - 1652250 - | GntR family transcriptional regulatory protein YPN_1454 1653165 - 1654535 + | N-formimino-L-glutamate deiminase YPN_1455 1654535 - 1655107 + | hypothetical protein YPN_1456 1656889 - 1655285 - | hypothetical protein TERM 1852 1655384 - 1655412 + g 76 -5.3 -4.89477 | GTCTGCTTGATGGGT GATTTCGGTTCCG GCT CGTAATCCAAATC TTTTATTCTTACGGG TERM 1853 1657102 - 1657067 - H 70 -7.7 -3.70773 | gap 1 CGCTACATGTAACAA CGGCCAACGGGATAAA TGATT TTTATCCCA-TGGCTG AGGCCTCACCATTTC YPN_1457 1657886 - 1658395 + | hypothetical protein YPN_1458 1658364 - 1658894 + | 3-oxoacyl-(acyl-carrier-protein) synthase III YPN_1459 1658908 - 1659924 + | dehydrogenase YPN_1460 1659917 - 1660723 + | hypothetical protein YPN_1461 1660720 - 1662006 + | coenzyme synthetase TERM 1854 1662180 - 1662199 + G 73 -9.2 -3.727 | CATCGGGGTTTATTG GCGGGGCA TTTA TGCGCCGC TTTGCCTGTCATGAC YPN_1462 1662140 - 1663102 + | dehydrogenase YPN_1463 1663102 - 1664256 + | glycosyl transferase TERM 1855 1664785 - 1664797 + G 73 -5.5 -4.63486 | ACCCAGCATTACTGA CGCTT TGT GAGCG TTTTATTGCGGCAGT YPN_1464 1664253 - 1664837 + | hypothetical protein YPN_1465 1664834 - 1666021 + | glycosyl transferase YPN_1466 1666646 - 1666182 - | hypothetical protein TERM 1856 1666779 - 1666757 - R 77 -6.3 -4.65933 | CATCTTTAAAAGAAA GCAGACAAC ATTTA ATTGCCTGC TCCTCAATATTGCCA YPN_1467 1668474 - 1666816 - | hypothetical protein TERM 1857 1668533 - 1668517 - H 78 -2.3 -5.49809 | TAAAGTTGAAAAAAA GTTTAGA GAC TGTAAAC AATATTGTGTAATTG TERM 1858 1669775 - 1669796 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1468 1668593 - 1669801 + | transposase for the IS285 insertion element YPN_1469 1672083 - 1669921 - | hypothetical protein YPN_1470 1672661 - 1674772 + | hypothetical protein YPN_1471 1675019 - 1675657 + | hypothetical protein YPN_1472 1676451 - 1675792 - | hypothetical protein YPN_1473 1677236 - 1676556 - | dehydrogenase TERM 1859 1677300 - 1677271 - R 87 -8.5 -4.57353 | gap 1, opp_overlap 1677271 GGCTATTAGATAAAA GCCGGGTGTGA-GA AGA CCGCCACTCCCGGC TTGAGTCACTAAGTT TERM 1860 1677583 - 1677565 - R 70 -9.6 -2.78695 | opp_overlap 1677564 1677563, overlap 1677564 TTGAGATAAAGTAAT CCGCTAAC TAT ATTAGCGG GGTTTTGGACTCATG YPN_1474 1678527 - 1677577 - | hypothetical protein YPN_1475 1679446 - 1678514 - | hypothetical protein TERM 1861 1678683 - 1678699 + g 84 -2.2 -5.59357 | overlap 1678675 GCTTTATGATTGTGT GCGATC TTTTC GATAGC TTTTTTTGATCTCAT YPN_1476 1680357 - 1679452 - | hypothetical protein TERM 1862 1681027 - 1681058 + r 84 -10.9 -3.63515 | opp_overlap 1681026 1681025 GGCAACGAAGTAAGT CCCCAGGCGCTTA CATAAA TAAGTACCTGGGG TTGTTGAGCGTAGCC TERM 1863 1681113 - 1681140 + r 85 -4 -5.5112 | opp_overlap 1681113 1681110, overlap 1681114 ACGAGTATATAAGCA GTAGTGGAGCCG TCAA CGACCCCACTAA TTTTTTATTACTGAA TERM 1864 1681114 - 1681139 + r 70 -7.5 -3.89587 | opp_overlap 1681113 1681110, overlap 1681113 CGAGTATATAAGCAG TAGTGGAGCCG TCAA CGACCCCACTA ATTTTTTATTACTGA YPN_1477 1682221 - 1681148 - | hypothetical protein TERM 1865 1681616 - 1681606 - G 70 -3.2 -4.87133 | AGTGTGTAAACAAAA TAGC CGG GCCA GATTTATCCACTACG YPN_1478 1682904 - 1682434 - | hypothetical protein YPN_1479 1683381 - 1682959 - | decarboxylase TERM 1866 1683560 - 1683536 - R 82 -8.6 -4.30104 | opp_overlap 1683541, overlap 1683533 1683539 TAAAGCAAGAAAGAA GAAGAGGAGG GAGAT CCTCCTCTTA AACCTGTATGCAAAA TERM 1867 1683557 - 1683539 - R 91 -10.3 -4.22676 | opp_overlap 1683541, overlap 1683533 1683536 AGCAAGAAAGAAGAA GAGGAGG GAGAT CCTCCTC TTAAACCTGTATGCA YPN_1480 1685043 - 1683658 - | two-component system sensor protein TERM 1868 1684360 - 1684383 + g 70 -4.4 -4.67904 | overlap 1684362 TTCCTGCCGTTCGAG CACGCCGTTG AATG CGACGGCCAG TTTTTGCAGTTCATC YPN_1481 1685747 - 1685055 - | transcriptional activator TERM 1869 1685148 - 1685159 + g 76 -7.2 -4.3739 | GGGCGTATCTATTTT CGCC CGCA GGCG TTTTATCGCCACCTC TERM 1870 1685829 - 1685858 + H 93 -8.7 -4.46112 | overlap 1685831 1685832 1685840 1685852 CCAACACCAGGCTGA CATTTTCCTGACA TTTT TGTCAGGAAAGTA TTTCTTTAACTGACA TERM 1871 1685831 - 1685856 + H 95 -11.3 -3.83744 | overlap 1685829 1685832 1685840 1685852 AACACCAGGCTGACA TTTTCCTGACA TTTT TGTCAGGAAAG TATTTCTTTAACTGA TERM 1872 1685832 - 1685855 + H 89 -12.6 -2.89523 | overlap 1685831 1685829 1685840 1685852 ACACCAGGCTGACAT TTTCCTGACA TTTT TGTCAGGAAA GTATTTCTTTAACTG YPN_1482 1686012 - 1687103 + | hypothetical protein YPN_1483 1687294 - 1687959 + | flavodoxin TERM 1873 1688397 - 1688411 + G 79 -7.1 -4.73682 | opp_overlap 1688396, overlap 1688376 TTTTTCTGTAAAATC TGGCG TATTT CGCCA TTTTCTCTTCTGGCG TERM 1874 1688468 - 1688478 + G 70 -3.2 -4.88736 | CAGTATTGTGGTATA CGGA GTG TCTG TTTTTATGGGTCGTG YPN_1484 1687974 - 1688669 + | hypothetical protein YPN_1485 1689720 - 1688878 - | hypothetical protein TERM 1875 1689748 - 1689765 + H 79 -7 -4.58242 | opp_overlap 1689748, overlap 1689743 TATGAAAACAAAAAA TCCACG CAAGCA CGTGGA TTTTATCGGTTTTTT TERM 1876 1689765 - 1689748 - H 100 -7.7 -5.83211 | opp_overlap 1689748 1689743 TATGAAAACAAAAAA TCCACGC AAGC ACGTGGA TTTTATCGGTTTTTT YPN_1486 1690351 - 1691007 + | hypothetical protein YPN_1487 1691004 - 1691834 + | putative esterase YPN_1488 1691842 - 1692240 + | rhodanese-like protein TERM 1877 1692289 - 1692321 + T 100 -16.5 -3.63744 | opp_overlap 1692294, overlap 1692294 GACACTTTTTTGCCT TAAAACGCCTGATGA ACT TCATCGGGCGTTTTG TATTTTAACGACAGA TERM 1878 1692316 - 1692294 - T 100 -12 -4.07568 | opp_overlap 1692289 1692294 TTTTTTGCCTTAAAA CGCCTGATGA ACT TCATCGGGCG TTTTGTATTTTAACG TERM 1879 1692294 - 1692316 + T 100 -14.2 -4.89567 | opp_overlap 1692294, overlap 1692289 TTTTTTGCCTTAAAA CGCCTGATGA ACT TCATCGGGCG TTTTGTATTTTAACG YPN_1489 1692797 - 1692288 - | integrase core subunit YPN_1490 1693129 - 1692815 - | hypothetical protein TERM 1880 1693346 - 1693363 + r 100 -11.3 -4.47485 | opp_overlap 1693346 CTATGAAAACAAAAA TCCACGC AATT GCGTGGA TTTTATAGCATTTTT TERM 1881 1693363 - 1693346 - R 100 -11.3 -5.50723 | opp_overlap 1693346 CTATGAAAACAAAAA TCCACGC AATT GCGTGGA TTTTATAGCATTTTT YPN_1491 1694517 - 1693426 - | translation-associated GTPase YPN_1492 1695301 - 1694681 - | peptidyl-tRNA hydrolase TERM 1882 1694837 - 1694821 - G 74 -7.3 -4.18018 | opp_overlap 1694821 GGGGTTTACCCAAAA CAAAGCC AGT GACTTTG CTTTTATCACCAGGA TERM 1883 1695406 - 1695436 + H 93 -12.1 -3.68836 | opp_overlap 1695401 AAAAATAATTGTATA GTTGAATGATTTC CCTTC GGAATCATTCAAC TTCTTGGCTAAATAT YPN_1493 1695633 - 1695905 + | hypothetical protein TERM 1884 1695972 - 1695937 - T 80 -9 -3.92577 | opp_overlap 1695942, overlap 1695942 GAATCTTCAAAAACA GAAAACCCGTTGTCGC ACAG GCTTCAACGGGTTTTT CTTTATCTGCTTCAA TERM 1885 1695967 - 1695942 - T 100 -8.9 -4.98672 | opp_overlap 1695942, overlap 1695937 TTCAAAAACAGAAAA CCCGTTGTCGC ACAG GCTTCAACGGG TTTTTCTTTATCTGC TERM 1886 1695942 - 1695967 + T 100 -8.9 -5.42975 | opp_overlap 1695942 1695937 TTCAAAAACAGAAAA CCCGTTGTCGC ACAG GCTTCAACGGG TTTTTCTTTATCTGC YPN_1494 1697054 - 1696107 - | ribose-phosphate pyrophosphokinase YPN_1496 1698294 - 1697395 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YPN_1495 1697324 - 1698148 + | hypothetical protein lolB 1698919 - 1698296 - | outer membrane lipoprotein LolB hemA 1699171 - 1700487 + | glutamyl-tRNA reductase TERM 1887 1700876 - 1700895 + G 79 -7.1 -4.60487 | opp_overlap 1700864, overlap 1700878 AATCCGCGCGGGGAC TGGCGGC GATGAA GCCGCTA TTTTTGCCGGTGATA prfA 1700520 - 1701602 + | peptide chain release factor 1 YPN_1500 1701602 - 1702432 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YPN_1501 1702496 - 1702897 + | hypothetical protein YPN_1502 1702894 - 1703703 + | putative transcriptional regulator YPN_1503 1703799 - 1704653 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 1888 1704795 - 1704772 - T 100 -11 -5.46657 | overlap 1704786 1704790 TAGGGCAATAAAAAA GGCAGCGTAG GCAA CTAAGCTGCC TCAGACTGCTGACAA TERM 1889 1704884 - 1704858 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1704867, overlap 1704859 1704874 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1890 1704885 - 1704859 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1704867, overlap 1704858 1704874 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1891 1704963 - 1704986 + T 81 -5.2 -5.1861 | opp_overlap 1704958, overlap 1704964 TTGTCAATAACCTCA CGCAGCGTAG GTAA CTAAGCTGCC TTTTTTGATAATCAA TERM 1892 1704964 - 1704985 + T 75 -8.7 -3.70443 | opp_overlap 1704958, overlap 1704963 TGTCAATAACCTCAC GCAGCGTAG GTAA CTAAGCTGC CTTTTTTGATAATCA YPN_1504 1706704 - 1705007 - | putative sulfate transporter YchM TERM 1893 1707526 - 1707505 - R 100 -6.5 -5.95166 | TGTAACCAAAAAAAA GGCCCCGAC TTTC GTCAGAACC TTATTTTTGAATTTG TERM 1894 1707628 - 1707665 + r 88 -12.7 -2.62184 | CACTCAGACACCTCA CCGTTTCGTTGCGCCGT TATA GTGGTGCAACGGGGCGG TACTATAGGGGGCGA TERM 1895 1707789 - 1707775 - R 74 -10 -3.18452 | ATTAGGTGAATTTAA CGCCAA TTT TTGGCG GTGGCGGGGGAGTCA YPN_1505 1708646 - 1707771 - | hypothetical protein TERM 1896 1708859 - 1708831 - R 75 -10.3 -2.87564 | overlap 1708851 TCATTCGCTGATACA GTCGCCGTTTCGT CGA ACAATACAGCGAC TGTACCCGCCAAGGA YPN_1506 1710029 - 1708947 - | hypothetical protein YPN_1507 1710885 - 1710049 - | binding-protein-dependent transport system membrane protein YPN_1508 1711748 - 1710882 - | binding-protein-dependent transport system membrane protein TERM 1897 1711085 - 1711074 - G 85 -7.2 -4.87665 | GGCGACCGAGAAAAA GGCG AAAT CGCC CAGTGCACCGATAAA YPN_1509 1712650 - 1711745 - | hypothetical protein TERM 1898 1712537 - 1712519 - GH 100 -16 -4.36914 | opp_overlap 1712519 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1899 1712519 - 1712537 + gH 100 -16 -3.07307 | opp_overlap 1712519 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1510 1712650 - 1713108 + | transposase for the IS1541 insertion element TERM 1900 1713186 - 1713210 + Tr 93 -9.9 -4.3953 | opp_overlap 1713189, overlap 1713188 1713189 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCTGCTTCAG TERM 1901 1713188 - 1713208 + Tr 100 -12.5 -3.79611 | opp_overlap 1713189, overlap 1713186 1713189 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCTGCTTC TERM 1902 1713189 - 1713207 + Tr 100 -16 -2.86682 | opp_overlap 1713189, overlap 1713188 1713186 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTGCTT TERM 1903 1713207 - 1713189 - TR 100 -16 -4.8048 | opp_overlap 1713188 1713186 1713189 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCTGCTT YPN_1511 1713537 - 1713196 - | ABC transporter, ATP-binding subunit YPN_1512 1713737 - 1714567 + | hypothetical protein YPN_1513 1714581 - 1715693 + | transcriptional regulatory protein TERM 1904 1715811 - 1715798 - f 76 -2.5 -5.252 | opp_overlap 1715791 TACTGGTATAAAAAA TTTAT TGAT ATAAA ACAGTGATTGATACA TERM 1905 1715939 - 1715921 - f 100 -8.1 -5.80951 | opp_overlap 1715920 1715921 ATGCAAAAGAAAAAA CCCAACC ATAAA GGTCGGG GTTTATTATTTGGCG TERM 1906 1716159 - 1716175 + F 73 -7.3 -4.16016 | overlap 1716151 AAAGTTATAGCAATT TGCTGAT TTC ATCGGCA TTTATTGAGGGATAC YPN_1514 1716328 - 1717065 + | putative hydrolase YPN_1515 1717102 - 1717662 + | hypothetical protein TERM 1907 1718107 - 1718148 + T 78 -8.7 -3.80625 | GTAGCGTGAAATGAC CTGTGCCGGTTAGTCAGTC AATG GGATGACTAATTGGCCCGG TTTAACTTCTAACCC YPN_1516 1718679 - 1718116 - | hypothetical protein TERM 1908 1718550 - 1718562 + g 70 -4.9 -4.62302 | TACCGATCTGTTTTT CATAA TTA TTATG TTTTTGCAGGTATTC TERM 1909 1719068 - 1719021 - R 79 -10.8 -3.14931 | gap 1, opp_overlap 1719033 CGTATGCGCGAGGAA TGT-GCTTATCAACCGGAAAGGC AAA ACGTCTCCGGTTGATAAGGGACA TAACGTTAGCTGCTG YPN_1517 1720279 - 1719074 - | multidrug resistance protein MdtH TERM 1910 1720035 - 1720051 + g 70 -8.7 -3.53012 | opp_overlap 1720048 GCTCGCATTAGCATC CCGGTGA CAA TCATCGG TTTGGCACCGAACCG YPN_1518 1720573 - 1721157 + | ribosomal-protein-S5-alanine N-acetyltransferase TERM 1911 1721812 - 1721775 - g 79 -5.5 -5.0133 | opp_overlap 1721797, overlap 1721777 TAGCCCTTGAAAAAA CAGCCCTTGAAGCTAGG GTTG CCCAGCTTGAACAGCAG GTTATCCAGTTGTCA TERM 1912 1721810 - 1721777 - g 71 -6.7 -4.13561 | opp_overlap 1721797, overlap 1721775 GCCCTTGAAAAAACA GCCCTTGAAGCTAGG GTTG CCCAGCTTGAACAGC AGGTTATCCAGTTGT TERM 1913 1722048 - 1722062 + G 82 -7.1 -4.88736 | TGGATACGCTCGCTG CGGCA AGTGA TGCCG TTTTTGTCCATAGTA YPN_1519 1721165 - 1722775 + | oxidoreductase TERM 1914 1722978 - 1723004 + F 71 -8.7 -3.34894 | opp_overlap 1722982, overlap 1722976 1722979 1722982 CCCCCATTGGGTAGA GCAACGCCTGC AGACC GTAGGCGTTGG TATTTACAGCACATT TERM 1915 1722979 - 1723003 + F 83 -12.2 -2.60615 | opp_overlap 1722982, overlap 1722978 1722976 1722982 CCCCATTGGGTAGAG CAACGCCTGC AGACC GTAGGCGTTG GTATTTACAGCACAT TERM 1916 1723149 - 1723161 + G 90 -6.2 -5.28826 | ATTTGGTGCAGGTAT GGCG ACGGA CGCC TTTTTTGTGGCATTT YPN_1520 1723042 - 1724577 + | membrane protein TERM 1917 1724708 - 1724692 - f 71 -9.4 -2.96538 | opp_overlap 1724692 ATAATGTATTATATA GCCCGA TAATT TCGGGC TTTTTTACATATTGA TERM 1918 1724692 - 1724708 + F 100 -9.4 -5.1615 | opp_overlap 1724692 ATAATGTATTATATA GCCCGA TAATT TCGGGC TTTTTTACATATTGA TERM 1919 1725284 - 1725273 - g 100 -4.4 -5.74122 | CATCACAGAAAAAAA TCTC CCCA GAGA AAATATGCCTGCCAA YPN_1521 1725065 - 1726726 + | hemolysin activator protein TERM 1920 1729606 - 1729592 - g 71 -5.7 -4.42238 | overlap 1729603 GCAGTCGAACCAAAA CGTCA GACAA TGACG CGTTAGCGTTGGTTA YPN_1522 1726876 - 1731486 + | hemolysin TERM 1921 1731521 - 1731533 + T 72 -6.2 -4.2461 | overlap 1731521 TAAAGATGTCTCTGA GGGG AAAAC CCCC TTTATTCATCACCCT TERM 1922 1731691 - 1731704 + T 100 -9.5 -5.07107 | CTAATCGTTTTTTAA GGCCC CGAG GGGCC TTTTTTGACGATTTA TERM 1923 1731732 - 1731758 + T 74 -8 -3.95674 | TTACATCCGCTCAAC GGTTTGAATACC CAA GGTGTCCAGACC TTGTTTCAGCGTTTT argS 1733447 - 1731717 - | arginyl-tRNA synthetase YPN_1524 1734058 - 1734633 + | hypothetical protein TERM 1924 1735038 - 1735055 + G 76 -2.7 -5.06414 | gap 1, overlap 1735042 GGTTCATCCGATAGT TCGGCCAC GTG GTGG-TGA TTTTTGTTACAGCAG YPN_1525 1734865 - 1735629 + | copper homeostasis protein CutC TERM 1925 1735792 - 1735816 + T 100 -10 -4.80959 | ATATAACGAACGGTA TCCCCCATCT GGGTG AGTTGGGGGA TTTTCTTATGGCTTA YPN_1526 1736793 - 1735822 - | hypothetical protein YPN_1527 1737593 - 1736790 - | hypothetical protein TERM 1926 1736870 - 1736886 + g 70 -2.1 -4.94992 | opp_overlap 1736869, overlap 1736871 CCGCGTGTTCAAACC CCGCCTG ATG CAGACGA TTTTTGTGGGTTTCC TERM 1927 1737724 - 1737708 - R 100 -10.8 -4.46072 | GGGAATAAACATAAA GGCGGC GATAT GCCGCC CAGACTAACGGTTGC YPN_1528 1738179 - 1737784 - | hypothetical protein YPN_1529 1739174 - 1738359 - | hypothetical protein TERM 1928 1740318 - 1740331 + G 74 -2.3 -5.16841 | TAACCGTCGTCGTGA TCTGG GTGG CCTGA TTTTTATTGATATGC aspS 1740232 - 1742028 + | aspartyl-tRNA synthetase TERM 1929 1742395 - 1742409 + G 73 -11.4 -3.0263 | ACCAGTGGTTGGATG CGGCAG AGG CTGCCG TATTGACCAAGTCCT ntpA 1742028 - 1742471 + | dATP pyrophosphohydrolase TERM 1930 1742576 - 1742562 - g 73 -5.6 -4.66537 | overlap 1742564 1742572 TGGGCCAACACAAAA CACCGC AAA GCGGCA CAGGATGCCAAACGC TERM 1931 1742574 - 1742564 - g 72 -8.2 -3.94773 | overlap 1742562 1742572 GGCCAACACAAAACA CCGC AAA GCGG CACAGGATGCCAAAC YPN_1532 1742529 - 1743272 + | hypothetical protein ruvC 1743481 - 1744002 + | Holliday junction resolvase TERM 1932 1744041 - 1744060 + F 100 -12.2 -5.34555 | opp_overlap 1744041, overlap 1744056 TTAACTGTTATCACA GGCTGGAT ATCC ATCCAGCC TTTTTTATGCTATAA TERM 1933 1744060 - 1744041 - f 83 -12.2 -2.79831 | opp_overlap 1744041 1744056 TTAACTGTTATCACA GGCTGGAT ATCC ATCCAGCC TTTTTTATGCTATAA TERM 1934 1744338 - 1744321 - g 73 -6.3 -4.58663 | gap 1 ATCATTCTGGAAAAA CAGCCACC GCT GGTG-CTG CTGGAAACAAACGGT TERM 1935 1744655 - 1744641 - g 71 -5.6 -4.56597 | opp_overlap 1744643, overlap 1744643 GGGTGTCGGTAAAAA GACCGC CGA GCGGTT AGTGGTCGAAATGAA TERM 1936 1744653 - 1744643 - g 72 -8.2 -3.90048 | opp_overlap 1744643, overlap 1744641 GTGTCGGTAAAAAGA CCGC CGA GCGG TTAGTGGTCGAAATG ruvA 1744219 - 1744899 + | Holliday junction DNA helicase motor protein ruvB 1745061 - 1746065 + | Holliday junction DNA helicase B TERM 1937 1746062 - 1746120 + T 72 -9.8 -2.85803 | gap 1, opp_overlap 1746066 1746068, overlap 1746046 TATTACTCGGGAAGA ATAATACGTTTCACGCTGTGGGGGTTA TAGGCC TAAACCCCACAGCGTGAAGTG-ATGAC TATCCTCGTGCTTTT TERM 1938 1746116 - 1746066 - T 89 -10.6 -3.94877 | gap 1, opp_overlap 1746046 1746062, overlap 1746068 ACTCGGGAAGAATAA TACGTTTCACGCTGTGGGGGTTA TAGGCC TAAACCCCACAGCGTGAAGTG-A TGACTATCCTCGTGC TERM 1939 1746115 - 1746068 - T 100 -15.7 -3.56318 | opp_overlap 1746062, overlap 1746066 TCGGGAAGAATAATA CGTTTCACGCTGTGGGGGTTA TAGGCC TAAACCCCACAGCGTGAAGTG ATGACTATCCTCGTG znuB 1746905 - 1746120 - | high-affinity zinc transporter membrane component TERM 1940 1746848 - 1746835 - G 76 -5.9 -4.61566 | CGCCAAACGACAAAA GACCC CAGC GGGCC AGCGGCTGTTGCCAG znuC 1747663 - 1746902 - | high-affinity zinc transporter ATPase TERM 1941 1747350 - 1747366 + g 76 -4.3 -5.00616 | opp_overlap 1747329 TGCACCCGTGTGAGT GCAGGCA GAA TGTCGGC TTTTTTCACCCCCGG TERM 1942 1747480 - 1747452 - G 70 -8.1 -3.65812 | TTTTGCGGAACATAA CCGATGCGTAAGC CAG GCTCACGAACCAG AGATCCACTACTTGG znuA 1747736 - 1748692 + | high-affinity zinc transporter periplasmic component TERM 1943 1748805 - 1748825 + G 86 -8.2 -4.60797 | GACTGTAATGACACT GGCCGTCG CTGTT TGGCGGCC TTTTATCTATCACCC YPN_1539 1748713 - 1750029 + | hypothetical protein TERM 1944 1750036 - 1750059 + F 73 -8.8 -3.5511 | overlap 1750034 1750038 CTGGATTAGCAGTGA TACCGTCAGG TTAG CCTGTCGGTG TGTTTATCCCTAAGC TERM 1945 1750038 - 1750057 + F 74 -9.2 -3.34988 | overlap 1750036 1750034 GGATTAGCAGTGATA CCGTCAGG TTAG CCTGTCGG TGTGTTTATCCCTAA TERM 1946 1750069 - 1750103 + F 100 -15.2 -3.74077 | overlap 1750074 TCGGTGTGTTTATCC CTAAGCTGCCAGTG AGTTGAG CACTGGCAGTTTAG TTTCAGTCTGTCAGC TERM 1947 1750074 - 1750098 + F 100 -11.5 -4.09556 | overlap 1750069 GTGTTTATCCCTAAG CTGCCAGTG AGTTGAG CACTGGCAG TTTAGTTTCAGTCTG YPN_1540 1750296 - 1751258 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 1948 1751379 - 1751358 - T 100 -15.9 -4.36595 | opp_overlap 1751354 1751353 CAGTTAAAGGTAAAA GGCCCGCTA GTGA TAGCGGGCC TGAGGTTATTGACAA TERM 1949 1751547 - 1751578 + T 100 -10.8 -4.46757 | overlap 1751552 GGGGTTTGTCAGCAG TCTGAGGCCCGCTA GTGA TAGCGGGCCTTTGC TTTTCTGCCTATCTT TERM 1950 1751552 - 1751573 + T 100 -15.9 -4.27483 | overlap 1751547 TTGTCAGCAGTCTGA GGCCCGCTA GTGA TAGCGGGCC TTTGCTTTTCTGCCT YPN_1541 1753045 - 1751603 - | pyruvate kinase YPN_1542 1754244 - 1753375 - | DNA-binding transcriptional regulator HexR YPN_1543 1754597 - 1756081 + | glucose-6-phosphate 1-dehydrogenase TERM 1951 1756135 - 1756100 - f 78 -9.7 -3.42574 | overlap 1756102 1756103 CTAACCGCACGATAA TAGCGCGCCACCAGA GGCGAA TCTGATGGCGCGTGA CTGCCAGGGAGAGCA TERM 1952 1756133 - 1756102 - f 95 -12.3 -3.28219 | overlap 1756100 1756103 AACCGCACGATAATA GCGCGCCACCAGA GGCGAA TCTGATGGCGCGT GACTGCCAGGGAGAG TERM 1953 1756132 - 1756103 - f 100 -15.8 -2.56449 | overlap 1756102 1756100 ACCGCACGATAATAG CGCGCCACCAGA GGCGAA TCTGATGGCGCG TGACTGCCAGGGAGA YPN_1544 1756323 - 1756964 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 1954 1757017 - 1757043 + F 100 -11.6 -5.03314 | opp_overlap 1757017 1757015 1757021 1757022, overlap 1757022 TATTTTCACCAAAGA CAGAGCCTCTGC ATT GCAGGGGTTTTG TTTTTTCAGAATCAC TERM 1955 1757022 - 1757038 + F 100 -10.1 -5.42198 | opp_overlap 1757017 1757021 1757015 1757022, overlap 1757017 TCACCAAAGACAGAG CCTCTGC ATT GCAGGGG TTTTGTTTTTTCAGA YPN_1545 1757679 - 1758122 + | integral membrane protein YPN_1546 1758109 - 1758438 + | multidrug efflux system protein MdtI TERM 1956 1758485 - 1758458 - T 70 -9.8 -2.52015 | opp_overlap 1758459, overlap 1758457 GCCAGAGGCAGTAAG CGGAGGGTAGCC TGGC GGCTACTCTCCT TTGTTTTTGTGGCTT TERM 1957 1758459 - 1758484 + T 100 -15.5 -4.97405 | opp_overlap 1758458 1758457 CCAGAGGCAGTAAGC GGAGGGTAGCC TGGC GGCTACTCTCC TTTGTTTTTGTGGCT YPN_1547 1758914 - 1758570 - | hypothetical protein TERM 1958 1759607 - 1759594 - g 74 -9.5 -3.53012 | TGTTTTGTGGTGAAA GCCCG TCGT CGGGC GATGGATGCTGATGT TERM 1959 1759623 - 1759642 + G 100 -10 -4.82901 | opp_overlap 1759635 GATGGATGCTGATGT GGTGGTGG TAAA CCACCATC TTTTTCTGGCGGACA TERM 1960 1760220 - 1760209 - g 78 -5.8 -4.7497 | opp_overlap 1760209 1760208 TTGATTGAGGAAAAA CCAG GCAC CTGG ATTTTCACCTCAGCG YPN_1548 1759045 - 1760949 + | DEAD box family helicase YPN_1549 1761021 - 1761719 + | hypothetical protein YPN_1550 1761856 - 1762461 + | lipoprotein TERM 1961 1762499 - 1762482 - f 100 -9.1 -4.82901 | gap 1 TTTGGGCCACAAAAA GGCGC-GG AGT CCAGCGCC TGAGGTTATTGACAA TERM 1962 1762577 - 1762603 + F 72 -10.1 -2.87229 | gap 1, opp_overlap 1762566, overlap 1762572 1762578 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTACCGT TERM 1963 1762578 - 1762604 + F 84 -10.1 -3.79519 | gap 1, opp_overlap 1762566, overlap 1762572 1762577 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTACCGTT TERM 1964 1762655 - 1762672 + F 100 -12.7 -4.64844 | TTGTCAGCAGTCAGA GGCGCTG AGTC CAGCGCC TTTTCTATATCTACA TERM 1965 1763211 - 1763226 + G 71 -6.1 -4.29106 | opp_overlap 1763221 CGCGGCGTTGCGTTA TGCGG ACCAAC CCGCA TTTATTAATATGGGC YPN_1551 1763071 - 1764792 + | long-chain-fatty-acid--CoA ligase TERM 1966 1764847 - 1764811 - f 100 -14.6 -3.767 | gap 1, opp_overlap 1764812 1764815, overlap 1764812 1764814 1764818 1764821 GACGGAGTCACTAAA TCATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TGT TTGTTATCGAACTAT TERM 1967 1764846 - 1764812 - f 100 -18.1 -2.85699 | gap 1, opp_overlap 1764812 1764815, overlap 1764811 1764814 1764818 1764821 ACGGAGTCACTAAAT CATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TG TTTGTTATCGAACTA TERM 1968 1764812 - 1764846 + F 100 -18.1 -4.31433 | gap 1, opp_overlap 1764812 1764811 1764814 1764818 1764821, overlap 1764815 ACGGAGTCACTAAAT CATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TG TTTGTTATCGAACTA TERM 1969 1764845 - 1764814 - f 100 -17.4 -2.97667 | opp_overlap 1764812 1764815, overlap 1764812 1764811 1764818 1764821 GGAGTCACTAAATCA TCAACAACGCCGGT TATC ACCGGCGTTGTTGT GTTTGTTATCGAACT TERM 1970 1764815 - 1764844 + F 100 -20.9 -3.75817 | opp_overlap 1764814 1764812 1764811 1764818 1764821, overlap 1764812 GAGTCACTAAATCAT CAACAACGCCGGT TATC ACCGGCGTTGTTG TGTTTGTTATCGAAC TERM 1971 1764841 - 1764818 - f 100 -16.8 -3.34227 | opp_overlap 1764815 1764812, overlap 1764814 1764812 1764811 1764821 TCACTAAATCATCAA CAACGCCGGT TATC ACCGGCGTTG TTGTGTTTGTTATCG TERM 1972 1764838 - 1764821 - f 100 -12.7 -3.79909 | opp_overlap 1764815 1764812, overlap 1764818 1764814 1764812 1764811 CTAAATCATCAACAA CGCCGGT TATC ACCGGCG TTGTTGTGTTTGTTA TERM 1973 1765887 - 1765867 - g 78 -2.6 -5.24129 | opp_overlap 1765867, overlap 1765869 CCGGGGTACAAAAAA GTCTTTAA AGATA TTAAAGCC TTGATTCAATCGGTC YPN_1552 1764913 - 1766073 + | ribonuclease D TERM 1974 1766096 - 1766125 + T 70 -10.1 -2.54204 | opp_overlap 1766091 1766093 1766114, overlap 1766095 1766094 1766121 1766122 TGATATTAATCAGCC TTCAGGGTGGGAT ATTA ATTCCACGCTGAA ACTTTTCAGTTTTAA TERM 1975 1766121 - 1766134 + T 73 -5.3 -4.61873 | opp_overlap 1766114 1766093, overlap 1766096 1766095 1766094 1766122 GATATTAATTCCACG CTGAA ACTT TTCAG TTTTAATTTATGAAC TERM 1976 1766298 - 1766267 - T 100 -17.5 -3.43117 | opp_overlap 1766270, overlap 1766270 ACAGTCAATTGAGAA TAACGCCCCTGTA AATAAA TACAGGGGCGTTA TTGAGAAGAAATCAT TERM 1977 1766270 - 1766295 + T 100 -14.8 -3.61517 | opp_overlap 1766270 1766267 GTCAATTGAGAATAA CGCCCCTGTA AATAAA TACAGGGGCG TTATTGAGAAGAAAT TERM 1978 1766295 - 1766270 - T 100 -14.8 -3.84808 | opp_overlap 1766270, overlap 1766267 GTCAATTGAGAATAA CGCCCCTGTA AATAAA TACAGGGGCG TTATTGAGAAGAAAT minE 1766579 - 1766310 - | cell division topological specificity factor MinE YPN_1554 1767395 - 1766583 - | cell division inhibitor MinD minC 1768106 - 1767420 - | septum formation inhibitor TERM 1979 1767776 - 1767791 + g 70 -4.6 -4.70879 | overlap 1767778 1767787 CCGGCGGACTGATGA CCGGCT CTGG AGCCAG TTTTTGGCCTTTACC TERM 1980 1768312 - 1768328 + H 74 -6.5 -4.55491 | TTGACCCCCTATATT TAGCGAC TCA GCCGCTA TTTTATGATTGCATA TERM 1981 1768332 - 1768343 + H 71 -3 -5.03145 | ACTCAGCCGCTATTT TATG ATTG CATA TTTTTTCAACACTTG YPN_1556 1768827 - 1769099 + | hypothetical protein YPN_1557 1769240 - 1770325 + | lipoprotein YPN_1558 1770396 - 1771052 + | hypothetical protein TERM 1982 1771091 - 1771060 - f 82 -7.9 -4.45693 | overlap 1771061 1771062 TAATATAAAGAGAAA CGTGCCGTCCGAC TCTACT GTCGGGCGGCAAA ACTTGCATCTGTAAG TERM 1983 1771090 - 1771061 - f 74 -9.2 -3.25789 | overlap 1771060 1771062 AATATAAAGAGAAAC GTGCCGTCCGAC TCTACT GTCGGGCGGCAA AACTTGCATCTGTAA TERM 1984 1771089 - 1771062 - f 86 -12.7 -2.53847 | overlap 1771061 1771060 ATATAAAGAGAAACG TGCCGTCCGAC TCTACT GTCGGGCGGCA AAACTTGCATCTGTA YPN_1559 1771155 - 1771601 + | hypothetical protein YPN_1560 1772866 - 1771628 - | hypothetical protein TERM 1985 1771999 - 1772012 + g 80 -4.5 -5.20328 | opp_overlap 1771971 1771969 TGCCAAATTCGCGAA GGTGG ACAT CTACC TTTATTTTTTTCCCC TERM 1986 1772914 - 1772932 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_1561 1772936 - 1773958 + | transposase for insertion sequence IS100 TERM 1987 1774039 - 1774025 - g 77 -11.4 -3.3506 | overlap 1774016 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_1562 1773958 - 1774737 + | transposase/IS protein YPN_1563 1776109 - 1775465 - | methyltransferase TERM 1988 1775545 - 1775557 + g 70 -3.3 -4.86773 | AGCCTTTCCGTCCGG CAGCC GAT GACTG TTTTTCCTGCTTTTG YPN_1564 1776190 - 1776636 + | hypothetical protein YPN_1565 1776710 - 1777315 + | hypothetical protein YPN_1566 1777316 - 1777705 + | phage antitermination protein TERM 1989 1777732 - 1777762 + F 71 -8.4 -3.55761 | gap 1 ATTCGGGGCTATATT TCCTGTACACCTG CAAAAT CAGGTGT-CGGGA TTTGCACCCTGGATA TERM 1990 1777794 - 1777805 + F 100 -7.2 -5.64274 | opp_overlap 1777787, overlap 1777787 CACAACAACGCATAG CCGC GTTT GCGG TTTTTTTATGCGTAA YPN_1567 1777976 - 1778539 + | hypothetical protein TERM 1991 1778633 - 1778651 + T 82 -5.9 -5.04601 | opp_overlap 1778633 ACACCATTAAAAAAG GCCTCGT ATATC GCGGGGC TTTTTCGTTTCTACA YPN_1568 1778806 - 1778624 - | hypothetical protein TERM 1992 1778858 - 1778883 + H 76 -9.7 -3.39856 | opp_overlap 1778834, overlap 1778859 GCAAGTCCTCGGCAT GGTCGCCCTCA TTGG TGAGGGTGACA TTCATTAACTATATG TERM 1993 1778859 - 1778882 + H 91 -13.2 -2.63432 | overlap 1778858 CAAGTCCTCGGCATG GTCGCCCTCA TTGG TGAGGGTGAC ATTCATTAACTATAT TERM 1994 1778923 - 1778940 + H 100 -9.1 -4.8622 | ACCAACTAATTTCAA GGCTCAC TTCG GTGGGCC TTTTTACTTCAGAGA YPN_1569 1778963 - 1779172 + | hypothetical protein TERM 1995 1779553 - 1779572 + F 100 -11.4 -4.43272 | CCGGTACTTTTTCAG GGCTACGC TTAT GCGTGGCC TTTTCCGTTTTAGCT YPN_1570 1779918 - 1780430 + | phage lysozyme YPN_1571 1780415 - 1780873 + | prophage endopeptidase TERM 1996 1781248 - 1781269 + F 100 -8.7 -5.45652 | opp_overlap 1781248 AACAAAGAACATGAA GGCTCAGTT TAAC GACTGGGCC TTTTTTATTGGCAGT YPN_1572 1781419 - 1782132 + | phage regulatory protein TERM 1997 1782208 - 1782180 - f 93 -9 -4.48483 | GATAATAAAGACAAA TTGAGAGCTACT TTCAC AACAGCTCTCAA TCAACTAAAAGCATT TERM 1998 1782562 - 1782538 - f 86 -12.2 -3.15999 | opp_overlap 1782538, overlap 1782552 TTTTCACATATCGAA GTCTCAGCCA ATTAG CGGCTGAGAC TTTATCAACCAGCGG TERM 1999 1782538 - 1782562 + F 95 -11.5 -3.85698 | opp_overlap 1782538 1782552 TTTTCACATATCGAA GTCTCAGCC AATTAGC GGCTGAGAC TTTATCAACCAGCGG YPN_1573 1782589 - 1783224 + | hypothetical protein YPN_1574 1783255 - 1783704 + | hypothetical protein TERM 2000 1783814 - 1783794 - g 78 -2.5 -5.23644 | overlap 1783796 AATCAAAGACAAAAA TGGGAAGTG TGT CACTTTCAA AATGACTCCAGAGCA YPN_1575 1783714 - 1784292 + | hypothetical protein TERM 2001 1785522 - 1785543 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1576 1784340 - 1785548 + | transposase for the IS285 insertion element YPN_1577 1785553 - 1786527 + | hypothetical protein TERM 2002 1786840 - 1786822 - g 76 -8 -4.1964 | overlap 1786826 TGGAATACCTGAAAA CCAACGCC AAT GGCGCAGG TATCAGCATTTATCA TERM 2003 1786836 - 1786826 - g 70 -8.2 -3.68767 | overlap 1786822 ATACCTGAAAACCAA CGCC AAT GGCG CAGGTATCAGCATTT YPN_1578 1786527 - 1787255 + | hypothetical protein YPN_1579 1787274 - 1787915 + | hypothetical protein YPN_1580 1787916 - 1789028 + | hypothetical protein TERM 2004 1789062 - 1789047 - f 70 -7.6 -3.62775 | ATTACGCTTTAACAA TTACCG CCAA CGGTAA CAAACTGAGTTATCC TERM 2005 1789088 - 1789105 + F 87 -6.2 -5.14563 | TATCCAAAATCTGAG CCTCGC CATCGT GCGGGG TTTTTTAATGGGCCA TERM 2006 1789145 - 1789135 - f 74 -6.8 -4.2461 | AGGCCCAGCAATAAA TCCC AAG GGGA CAGCATGCTATTCCG TERM 2007 1789609 - 1789595 - g 76 -8.5 -4.18018 | CCGCCGCATTGAAAA CCGGC GCATT GCCGG GCGCTGCTGACGACA YPN_1581 1789150 - 1789923 + | hypothetical protein YPN_1582 1789937 - 1791142 + | hypothetical protein TERM 2008 1791157 - 1791170 + G 100 -9.5 -4.66537 | overlap 1791168 ATGGTGATGACTATG GGGGC TGTG GCCCC TTTTCTATTGGAGGA TERM 2009 1791386 - 1791365 - g 70 -8 -3.71672 | overlap 1791350 1791361 GCCGAGCAAAACTAA CTCAGCCA TTACCC TGGCCGAG ATCAGATATCATTTT YPN_1583 1791142 - 1791672 + | hypothetical protein YPN_1584 1791735 - 1791923 + | hypothetical protein YPN_1585 1791925 - 1792275 + | hypothetical protein YPN_1586 1792277 - 1792861 + | hypothetical protein YPN_1587 1792858 - 1793265 + | hypothetical protein TERM 2010 1793300 - 1793287 - f 70 -9.5 -2.78058 | opp_overlap 1793287, overlap 1793284 ATCAATCCAACACCA CCGGC CTAT GCCGG TTTTTTTATATCCAA TERM 2011 1793287 - 1793300 + F 100 -9.5 -5.71712 | opp_overlap 1793284 1793287 ATCAATCCAACACCA CCGGC CTAT GCCGG TTTTTTTATATCCAA YPN_1588 1793331 - 1794251 + | hypothetical protein YPN_1589 1794264 - 1794575 + | hypothetical protein TERM 2012 1796098 - 1796083 - g 76 -7.6 -4.38712 | CTCACTTTCAGAAAA TGCCAA CAAT TTGGCA GAGAATGCAGATAAT TERM 2013 1797051 - 1797041 - g 80 -2.4 -5.46657 | GAGTCTAACAAAAAA GCGG CAG CAGC AGGGAAAGCTACATT TERM 2014 1797165 - 1797146 - g 78 -2.2 -5.27023 | gap 1 ACGCCAAAAATAAAA GCT-TATCA AGA CGATATAGC AACAAGGGAGTTACT YPN_1590 1794884 - 1798387 + | phage tail protein YPN_1591 1798390 - 1798731 + | hypothetical protein TERM 2015 1798869 - 1798886 + F 100 -10.5 -5.60993 | opp_overlap 1798856 1798854 1798869, overlap 1798857 CACGCCCTTTCTAAA GGCTGCC TTAT GGCGGCC TTTTTTTGTGCCCAG TERM 2016 1798886 - 1798869 - f 71 -8.3 -3.53224 | opp_overlap 1798857 1798869, overlap 1798856 1798854 CACGCCCTTTCTAAA GGCTGCC TTAT GGCGGCC TTTTTTTGTGCCCAG TERM 2017 1798906 - 1798924 + F 100 -16 -3.07307 | opp_overlap 1798906 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2018 1798924 - 1798906 - f 100 -16 -4.36914 | opp_overlap 1798906 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1592 1799037 - 1799495 + | transposase for the IS1541 insertion element TERM 2019 1799569 - 1799601 + F 100 -11.3 -3.92373 | opp_overlap 1799576, overlap 1799573 1799575 1799576 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATGGGTGAAATA TERM 2020 1799573 - 1799597 + F 100 -9.9 -4.57482 | opp_overlap 1799576, overlap 1799569 1799575 1799576 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATGGGTGA TERM 2021 1799575 - 1799595 + F 100 -12.5 -3.89305 | opp_overlap 1799576, overlap 1799573 1799569 1799576 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATGGGT TERM 2022 1799594 - 1799576 - f 100 -16 -4.8048 | opp_overlap 1799576 1799575 1799573 1799569 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG TERM 2023 1799576 - 1799594 + F 100 -16 -2.92499 | opp_overlap 1799576, overlap 1799575 1799573 1799569 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATGGG YPN_1593 1799616 - 1800368 + | hypothetical protein TERM 2024 1800394 - 1800384 - g 79 -6.8 -4.63586 | opp_overlap 1800383 AGATGAGAGATAAAA CGCT TAA AGCG ATATTGGCCCATGCC YPN_1594 1800371 - 1801081 + | phage minor tail protein TERM 2025 1801285 - 1801302 + F 71 -3.4 -4.9218 | opp_overlap 1801260 GGTTATGCCGTTACA CCGAAG ACGAAA TTTCGG TTTTTGTCATAAGTA YPN_1595 1801342 - 1801974 + | hypothetical protein TERM 2026 1802015 - 1801992 - T 78 -5.2 -5.06414 | opp_overlap 1801997, overlap 1801997 TGCTCCGAATAAAAA CTAAACCCGC TCCG GCGGGTTTTT GCATTCTAGCCCACT TERM 2027 1801997 - 1802010 + T 100 -9.5 -4.78149 | opp_overlap 1801992 1801997 CGAATAAAAACTAAA CCCGC TCCG GCGGG TTTTTGCATTCTAGC TERM 2028 1802010 - 1801997 - T 95 -9.5 -4.43037 | opp_overlap 1801997, overlap 1801992 CGAATAAAAACTAAA CCCGC TCCG GCGGG TTTTTGCATTCTAGC TERM 2029 1802025 - 1802038 + T 100 -8.1 -5.46657 | GTTTTTGCATTCTAG CCCAC TCTG GTGGG TTTTTTATTGGCATC YPN_1596 1802592 - 1802053 - | phage regulatory protein YPN_1597 1802849 - 1803856 + | hypothetical protein TERM 2030 1803886 - 1803901 + F 80 -6.1 -4.85195 | opp_overlap 1803886 TCACACAAAACCCAA CCCAC TTAACT GTGGG TTTTTGCGTTATTTT YPN_1598 1803955 - 1804506 + | phage-related membrane protein TERM 2031 1804886 - 1804901 + F 100 -8.2 -5.45652 | opp_overlap 1804886 TGTAAAACAAATCGA GGTCGC TTAG GCGGCC TTTTTTATTGGAGAT YPN_1599 1804920 - 1805540 + | phage tail assembly protein TERM 2032 1805673 - 1805636 - f 95 -12.9 -3.15999 | gap 1, opp_overlap 1805641 1805643, overlap 1805638 GTGTCAGACATGCAA CAGCAGATCACTAGCATC CAA GAGGC-AGTGATCTGCTA TCAAGATTTAAACCA TERM 2033 1805671 - 1805638 - f 100 -13.3 -3.14125 | gap 1, opp_overlap 1805641 1805643, overlap 1805636 GTCAGACATGCAACA GCAGATCACTAGCATC CAA GAGGC-AGTGATCTGC TATCAAGATTTAAAC TERM 2034 1806010 - 1805985 - f 84 -11.1 -3.58726 | TCCTCCGATAGATAA CACCCTAGCCA TGCG CGGCTTGGGTG GGCTGACCTTACACA TERM 2035 1806077 - 1806093 + F 100 -12.3 -5.64274 | AATAAACACGCCAAT GCCCACA CTT TGTGGGC TTTTTTTATGGGTGA TERM 2036 1806713 - 1806692 - g 70 -4.3 -4.6902 | GTACAAGGCGAAAAA CAGCCAATG CCAA CTCTGGCCG CATTGCCGACAAGAT YPN_1600 1806112 - 1809315 + | phage host specificity protein YPN_1601 1809300 - 1810313 + | hypothetical protein TERM 2037 1810550 - 1810534 - g 73 -5.1 -4.6821 | opp_overlap 1810534 AATGGCAATATAAAA GAATCCG TGG CCGATTC CTCTTATGCAATTAT YPN_1602 1810330 - 1811247 + | hypothetical protein YPN_1603 1811258 - 1811677 + | phage tail fiber assembly protein YPN_1604 1811674 - 1811829 + | hypothetical protein TERM 2038 1811924 - 1811903 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_1605 1813106 - 1811898 - | transposase for the IS285 insertion element TERM 2039 1813360 - 1813381 + r 78 -8.7 -3.827 | TAAATTGCTTTAGCC GATGACAGC CTAA GCTGCCATC TTTACCTTCATTGTT YPN_1606 1814583 - 1813411 - | hypothetical protein TERM 2040 1813576 - 1813560 - G 83 -5.1 -5.0925 | overlap 1813562 GCGGAAAACCAAAAA TACCCAC GAA GTAGGCA ACGACAAACCAAGTC YPN_1607 1815786 - 1814587 - | aminotransferase YPN_1608 1816543 - 1815803 - | hypothetical protein TERM 2041 1817391 - 1817416 + H 70 -7.7 -3.65046 | opp_overlap 1817390 TTTTCTTTAATAGAT TCACTATTCCT GCGC AGGAATAATGA TTATTAACATAGCCA TERM 2042 1817563 - 1817544 - H 80 -6.4 -4.88067 | ATGCATGGAGAAAAA GGTGAGGA TATG TCCTTACC CATGGCGGTTTTTAC YPN_1609 1817635 - 1817991 + | hypothetical protein TERM 2043 1818043 - 1818078 + T 73 -8.5 -3.66378 | opp_overlap 1818042 1818037 1818043 ATTGACTAATGAAAC TCAGATCAACAGG GGATGGAAAA TCTGTTGATCTGA TTTCAATCCAATCTG TERM 2044 1818382 - 1818364 - T 100 -11.7 -4.98522 | opp_overlap 1818364 AATCTGATATAAAAA TGGCGCC AGAGA GGCGCCA TTGATAATAAAGATA TERM 2045 1818364 - 1818382 + T 84 -11.7 -3.21416 | opp_overlap 1818364 AATCTGATATAAAAA TGGCGCC AGAGA GGCGCCA TTGATAATAAAGATA YPN_1610 1818953 - 1818408 - | disulfide bond formation protein B nhaB 1820748 - 1819174 - | sodium/proton antiporter TERM 2046 1819386 - 1819396 + g 72 -8.2 -3.83026 | opp_overlap 1819385 1819386 GCAGGAACAAGAAAG CGGC CTG GCCG TTTGGTGTCGCCACG TERM 2047 1819584 - 1819573 - G 78 -5.8 -4.74917 | ATTAAACAGATAAAA CAGC GATA GCTG AGCGGAAGGCGAGGC TERM 2048 1820282 - 1820267 - G 73 -3.2 -5.00846 | overlap 1820268 TAAATAGTATAAAAA CCAACG GATA CGCTGA TAACTACCGCGATTA TERM 2049 1820415 - 1820404 - G 71 -5.8 -4.32857 | opp_overlap 1820404 TTTCGTAAATACAAA CAGC AGCA GCTG TTTCATAAAGTAGAT TERM 2050 1821379 - 1821361 - g 70 -3 -4.88736 | overlap 1821371 CATCATCCAGAAAAA GCGCAAGA AAT TTTGGCGC GAGCGAAAACAGTGG YPN_1612 1820992 - 1821711 + | fatty acid metabolism regulator TERM 2051 1821882 - 1821898 + T 100 -10.1 -5.04385 | TTGTCAGCAGTCTGA GGGGCGT TTA ATGCCCC TTTTTTACCGATGTC YPN_1613 1823464 - 1821929 - | hypothetical protein TERM 2052 1824714 - 1824734 + G 77 -8.9 -3.97368 | overlap 1824710 CTACCGCGCTACTGG CCGGGCTGG TGT CTATCCCGG TTTATCCATTGAAGG TERM 2053 1825203 - 1825249 + G 80 -9.6 -3.98291 | opp_overlap 1825200, overlap 1825204 AGCCACTGAATATTG CCCCGTTACACGATATTCAC CCCATCC GTTAATATCGTGTAACGCGA TTATTTGCCGTTGTT TERM 2054 1825204 - 1825248 + G 78 -13.1 -2.9789 | opp_overlap 1825200, overlap 1825203 GCCACTGAATATTGC CCCGTTACACGATATTCAC CCCATCC GTTAATATCGTGTAACGCG ATTATTTGCCGTTGT YPN_1614 1823930 - 1825234 + | D-amino acid dehydrogenase small subunit YPN_1615 1826452 - 1825250 - | multidrug resistance protein TERM 2055 1826691 - 1826655 - R 100 -15.4 -5.5112 | CTCATCAATAAAAAA TGCTATTACCTGCCCA GAGGG TAGACAGGTAATAGCA GACAGGTAATGGCGG YPN_1616 1827586 - 1826717 - | hypothetical protein TERM 2056 1827556 - 1827577 + g 80 -2.9 -5.3671 | CCCAATGTTGACGAG GTGCACGGT AAAT ACCTTGAAC TTTTTTCATTATCTT YPN_1617 1827784 - 1828689 + | LysR family transcriptional regulator YPN_1618 1829842 - 1828724 - | membrane protein TERM 2057 1829356 - 1829341 - G 71 -6.8 -4.20084 | AGCAGGCACCTAAAA TGGCCA GCGT CGGCCA TAATCCGGCAAATTG TERM 2058 1829938 - 1829900 - R 78 -5.3 -4.9792 | opp_overlap 1829900 TAGCCCATAGAAAAA GCCGGAAAATGCTTTCT GAACA AGAAAAAATTAACCGGC TGATATTGCTGCTAA YPN_1619 1831224 - 1829950 - | hypothetical protein TERM 2059 1831272 - 1831329 + r 74 -9.9 -3.14307 | gap 1 CCACCGGCCTCACAC TGTCCCTTTGTCCTTGGCGTTACAGC ATGGTTA GCGGCAACGCCAAGGACGTAGTG-CA TAGTTTTGCCTTCCT YPN_1620 1833308 - 1831374 - | hypothetical protein TERM 2060 1833050 - 1833078 + g 70 -10.4 -3.01712 | opp_overlap 1833048 GATAAGAAACAATCT GTTCTATGGCTT CCTCC ATGCCATAGAAC TCTTCAAACGCAGGA YPN_1621 1833731 - 1834501 + | hypothetical protein TERM 2061 1834531 - 1834547 + T 100 -13.7 -5.0916 | opp_overlap 1834531 1834528 1834526 CTATGAGCAAGACCA TGGGGCC AAA GGCCCCA TTTTTATATTGACCG TERM 2062 1834547 - 1834531 - T 93 -13.7 -2.78495 | opp_overlap 1834531, overlap 1834528 1834526 CTATGAGCAAGACCA TGGGGCC AAA GGCCCCA TTTTTATATTGACCG YPN_1622 1835449 - 1834574 - | hypothetical protein TERM 2063 1835719 - 1835736 + r 90 -11.3 -3.65529 | opp_overlap 1835719 CTATAAACAAGAAAA GCCACTC GCGT GAGTGGC TTTAGGTAGAAATCT TERM 2064 1835736 - 1835719 - R 100 -11.3 -5.05116 | opp_overlap 1835719 CTATAAACAAGAAAA GCCACTC GCGT GAGTGGC TTTAGGTAGAAATCT YPN_1623 1836758 - 1835763 - | glyceraldehyde 3-phosphate dehydrogenase A TERM 2065 1837026 - 1837044 + H 82 -2.4 -5.70522 | CAGTTTAGGACAATT TTAACTGC TTT GTTGTTAA TTTTTTGTTATTATT YPN_1624 1837106 - 1837519 + | methionine sulfoxide reductase B YPN_1625 1837488 - 1837862 + | hypothetical protein TERM 2066 1837977 - 1837956 - T 100 -13 -5.47159 | opp_overlap 1837956 TCTGAATACAAAAAA TGGGCGCC GAGGCA GGCGCCCA TTTTTGCGCAGAAAG TERM 2067 1837956 - 1837977 + T 100 -13 -4.56597 | opp_overlap 1837956 TCTGAATACAAAAAA TGGGCGCC GAGGCA GGCGCCCA TTTTTGCGCAGAAAG YPN_1626 1838643 - 1837996 - | nicotinamidase/pyrazinamidase ansA 1839674 - 1838658 - | cytoplasmic asparaginase I TERM 2068 1839762 - 1839741 - R 100 -14.5 -4.7497 | opp_overlap 1839735 1839732 CTCAGCGAGGAAAAA CAGCCCGAT GGGT ATCGGGCTG AATATCTATCTGTAT YPN_1628 1841641 - 1839791 - | protease 4 YPN_1629 1841804 - 1842355 + | hypothetical protein TERM 2069 1842770 - 1842782 + G 86 -3.4 -5.61596 | ACGGTGTTGGCATTA TCAG CACGA CTGA TTTTTTTATGCCGAT YPN_1630 1842580 - 1843626 + | selenophosphate synthetase YPN_1631 1843685 - 1845613 + | DNA topoisomerase III YPN_1632 1845610 - 1845900 + | hypothetical protein YPN_1633 1846299 - 1845913 - | pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YPN_1634 1847203 - 1846397 - | exonuclease III TERM 2070 1846978 - 1846990 + g 77 -9.1 -4.015 | GGAAACCTCGGCGCA CAGCC AGT GGCTG TTCTTTCGTCAATAG TERM 2071 1847056 - 1847044 - G 73 -3.3 -5.0538 | GCCCATGGTAAAAAA CGTGG TAA CCATG CTGGCTGACGTCTTC TERM 2072 1848166 - 1848154 - g 86 -6.3 -5.17054 | ATAATAGGGAAAAAA CTCTT TAA AAGAG AGAAATTTGGCATGA YPN_1635 1848013 - 1848873 + | LysR family transcriptional regulator TERM 2073 1850927 - 1850948 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1637 1849745 - 1850953 + | transposase for the IS285 insertion element purU 1851785 - 1850916 - | formyltetrahydrofolate deformylase YPN_1639 1852333 - 1851869 - | hypothetical protein TERM 2074 1852862 - 1852882 + H 95 -7.6 -4.9138 | opp_overlap 1852864 AATGTTTACGCTGAA TAGCCACC TTTAT GGTGGTTA TTTTGTTTGCGTACT YPN_1640 1853667 - 1854683 + | response regulator of RpoS YPN_1641 1854990 - 1856336 + | nucleotide sugar dehydrogenase TERM 2075 1856738 - 1856715 - T 100 -15.4 -5.88197 | opp_overlap 1856715 TGAAAGACAAAAAAA CACCCTCCTA TTAA TAGGAGGGTG TTTCGATAGTAATAG TERM 2076 1856715 - 1856738 + T 100 -15.4 -3.69323 | opp_overlap 1856715 TGAAAGACAAAAAAA CACCCTCCTA TTAA TAGGAGGGTG TTTCGATAGTAATAG YPN_1642 1857178 - 1856771 - | global DNA-binding transcriptional dual regulator H-NS TERM 2077 1856895 - 1856917 + g 77 -10.6 -3.5394 | overlap 1856901 1856914 TTATACTGATATTTA GCAGGACGTG CAG CACGTTTTGC TTTACCAGCAGCTTT TERM 2078 1856901 - 1856911 + g 76 -6.8 -4.54727 | overlap 1856895 TGATATTTAGCAGGA CGTG CAG CACG TTTTGCTTTACCAGC YPN_1643 1857928 - 1858518 + | thymidine kinase YPN_1644 1859666 - 1858887 - | transposase/IS protein TERM 2079 1859585 - 1859599 + g 77 -11.4 -3.3506 | overlap 1859598 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_1645 1860688 - 1859666 - | transposase for insertion sequence IS100 TERM 2080 1860710 - 1860692 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 2081 1861137 - 1861178 + r 86 -6 -5.27477 | gap 2, opp_overlap 1861143, overlap 1861138 1861143 TAATTGGTCTGTAAA AGA-A-AACCCCCGATCAGC GGCT GCTCATCGGGGGTTATATCA TTTTTTGCTTACCCT TERM 2082 1861138 - 1861177 + r 81 -9.5 -3.75402 | gap 2, opp_overlap 1861143, overlap 1861137 1861143 AATTGGTCTGTAAAA GA-A-AACCCCCGATCAGC GGCT GCTCATCGGGGGTTATATC ATTTTTTGCTTACCC TERM 2083 1861170 - 1861143 - R 100 -15.6 -5.07652 | opp_overlap 1861138 1861137 1861143 GTCTGTAAAAGAAAA CCCCCGATCAGC GGCT GCTCATCGGGGG TTATATCATTTTTTG TERM 2084 1861143 - 1861170 + r 100 -15.6 -3.74447 | opp_overlap 1861143, overlap 1861138 1861137 GTCTGTAAAAGAAAA CCCCCGATCAGC GGCT GCTCATCGGGGG TTATATCATTTTTTG YPN_1646 1863903 - 1861228 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 2085 1862112 - 1862147 + g 77 -9.1 -4.10007 | opp_overlap 1862123, overlap 1862123 AACCGGTACCTGATG TGGTTGTAATAGCGA CCAATT TCGCTTTTACACCCA TTTTCGGGAACTTAT TERM 2086 1863425 - 1863459 + g 83 -8.7 -4.33621 | gap 2, opp_overlap 1863411 1863410, overlap 1863454 TCCGCTGGCGCACCT GCTGC-GATAGCG-GCT TGA AGCACGATATCCGCAGC TTTATTGGTTGCGTC TERM 2087 1864670 - 1864680 + H 74 -4 -5.08088 | overlap 1864664 GTTATAATGCACTGT TATC GGT GATA TTTTTATTAGCAATT YPN_1647 1864710 - 1865354 + | hypothetical protein TERM 2088 1865375 - 1865410 + F 80 -2.6 -5.49809 | gap 1, overlap 1865376 ACCATTCAGAATTTT CGAG-AGGCCACTGA ACTATTC TTGGTGGCCTTCTCC TTTTTTTCCGCTTTG TERM 2089 1865780 - 1865767 - f 73 -2.5 -5.24531 | ATTCTGCATAAAAAA TATTT TAGT AAATA AATTCAATATGTTAT YPN_1648 1866192 - 1867829 + | periplasmic oligopeptide-binding protein precursor oppB 1867916 - 1868836 + | oligopeptide transporter permease YPN_1650 1868855 - 1869760 + | oligopeptide transport system permease protein TERM 2090 1870233 - 1870223 - g 70 -3.2 -4.7497 | TTGATGCAGTAAAAA TGCC CGA AGCA CGTAAACGTATGCGC oppD 1869772 - 1870773 + | oligopeptide transporter ATP-binding component TERM 2091 1871732 - 1871742 + G 70 -8.2 -3.794 | ATTAGAAGGGAGTTT CCGC CAC GCGG TTTCGTGCCTTAAAG YPN_1652 1870770 - 1871771 + | oligopeptide transport ATP-binding protein TERM 2092 1872232 - 1872248 + F 77 -4.5 -5.05228 | opp_overlap 1872195 1872232 1872227 ATTGACGAATTAAAA CATATTA AGT TAATGTG TTTTTGTCATTTAAT YPN_1653 1872332 - 1872547 + | hypothetical protein TERM 2093 1872639 - 1872672 + T 100 -16.9 -3.80114 | overlap 1872640 GAGCTGCTCTTGCTC ACCTCAGTCACTTAG TTAT CTAAGTGACTGAGGA TTTACTCGATTGCTG TERM 2094 1872640 - 1872671 + T 100 -20.4 -2.87586 | overlap 1872639 AGCTGCTCTTGCTCA CCTCAGTCACTTAG TTAT CTAAGTGACTGAGG ATTTACTCGATTGCT TERM 2095 1872788 - 1872820 + T 71 -9.1 -3.31416 | opp_overlap 1872787 1872789, overlap 1872791 AAGGATAATTAAGAT ACATTGCCCCGGGGT TGA ACTATGGGGCAATGA TTAACTCTTTATTTT TERM 2096 1872791 - 1872817 + T 70 -9.4 -2.8084 | opp_overlap 1872789 1872787, overlap 1872788 GATAATTAAGATACA TTGCCCCGGGGT TGA ACTATGGGGCAA TGATTAACTCTTTAT YPN_1654 1873199 - 1872846 - | dsDNA-mimic protein cls 1874794 - 1873334 - | cardiolipin synthetase TERM 2097 1875012 - 1875038 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 1875001, overlap 1875007 1875013 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2098 1875013 - 1875039 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 1875001, overlap 1875007 1875012 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2099 1875434 - 1875450 + H 100 -8.7 -5.48213 | opp_overlap 1875433 1875436 ATTATGGTAATAAGG CAGTCTC TAT GAGGCTG TTTTTGTTTTGAATC YPN_1656 1875841 - 1876380 + | attachment invasion locus protein precursor YPN_1657 1876355 - 1876483 + | hypothetical protein YPN_1658 1876601 - 1876864 + | hypothetical protein TERM 2100 1876947 - 1876908 - T 100 -11 -6.15536 | opp_overlap 1876910 1876912 1876915 1876918, overlap 1876909 1876910 AATTAACAAAAAAAA CTTATAATAATACGCCTA GCTT TAGGCGTATTATTATATC TAGTGTCTACAACCG TERM 2101 1876946 - 1876909 - T 100 -14.5 -4.25661 | opp_overlap 1876910 1876912 1876915 1876918, overlap 1876908 1876910 ATTAACAAAAAAAAC TTATAATAATACGCCTA GCTT TAGGCGTATTATTATAT CTAGTGTCTACAACC TERM 2102 1876945 - 1876910 - T 100 -18 -3.12957 | opp_overlap 1876910 1876912 1876915 1876918, overlap 1876909 1876908 TTAACAAAAAAAACT TATAATAATACGCCTA GCTT TAGGCGTATTATTATA TCTAGTGTCTACAAC TERM 2103 1876910 - 1876945 + T 100 -18 -2.88999 | opp_overlap 1876910 1876909 1876908, overlap 1876912 1876915 1876918 TTAACAAAAAAAACT TATAATAATACGCCTA GCTT TAGGCGTATTATTATA TCTAGTGTCTACAAC TERM 2104 1876912 - 1876943 + T 100 -16.2 -2.99545 | opp_overlap 1876910 1876909 1876908, overlap 1876910 1876915 1876918 AACAAAAAAAACTTA TAATAATACGCCTA GCTT TAGGCGTATTATTA TATCTAGTGTCTACA TERM 2105 1876915 - 1876940 + T 100 -13.5 -3.63762 | opp_overlap 1876910 1876909 1876908, overlap 1876912 1876910 1876918 AAAAAAAACTTATAA TAATACGCCTA GCTT TAGGCGTATTA TTATATCTAGTGTCT TERM 2106 1876918 - 1876937 + T 90 -10.8 -3.94067 | opp_overlap 1876910 1876909 1876908, overlap 1876915 1876912 1876910 AAAAACTTATAATAA TACGCCTA GCTT TAGGCGTA TTATTATATCTAGTG YPN_1659 1877225 - 1876980 - | hypothetical protein YPN_1660 1877744 - 1877448 - | YciI-like protein YPN_1661 1878045 - 1878803 + | transport protein TonB TERM 2107 1878865 - 1878844 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_1662 1880047 - 1878839 - | transposase for the IS285 insertion element TERM 2108 1880148 - 1880165 + r 100 -14.1 -4.12603 | CTGTCACCAACCTCA GGGCCGC TTTT GCGGCCC TTCTTGTTTGATCAA YPN_1663 1880644 - 1880195 - | acyl-CoA thioester hydrolase YPN_1664 1881266 - 1880724 - | intracellular septation protein A YPN_1665 1881497 - 1882579 + | hypothetical protein YPN_1666 1882611 - 1883231 + | sulfate permease family protein TERM 2109 1883277 - 1883299 + T 100 -16.4 -4.68593 | TGTCTACAGTTTGAA CGCCTGATGT AAT ACATCAGGCG TTTTTGAATGATACA YPN_1667 1884122 - 1883352 - | hypothetical protein YPN_1668 1884284 - 1884499 + | hypothetical protein TERM 2110 1884550 - 1884530 - f 73 -8.4 -3.57715 | AAAAGATACGAAAGA TGTGATCT CGATT AGATCACA AATACTCATTTGTAG TERM 2111 1884601 - 1884553 - f 100 -13.6 -4.03078 | gap 1, overlap 1884555 1884556 CGATTAGATCACAAA TACTCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATG-GAA TGGATAATGAAAAAA TERM 2112 1884599 - 1884555 - f 100 -16.2 -3.60505 | gap 1, overlap 1884553 1884556 ATTAGATCACAAATA CTCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATG-G AATGGATAATGAAAA TERM 2113 1884599 - 1884556 - f 100 -16.4 -2.7558 | overlap 1884555 1884553 TTAGATCACAAATAC TCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATGG AATGGATAATGAAAA YPN_1669 1884596 - 1885243 + | outer membrane protein W TERM 2114 1885353 - 1885385 + T 89 -7 -5.30155 | gap 1, opp_overlap 1885359, overlap 1885357 1885359 CATCAGTTAGGCGGG CAGTAAGGAGGTGCG GTTA TGCGCCTCC-TCCTG TTTTTTACTTAATCA TERM 2115 1885359 - 1885380 + T 74 -10.1 -3.11487 | opp_overlap 1885359, overlap 1885357 1885353 TTAGGCGGGCAGTAA GGAGGTGCG GTTA TGCGCCTCC TCCTGTTTTTTACTT YPN_1670 1885704 - 1885390 - | lipoprotein YPN_1671 1886033 - 1885884 - | hypothetical protein TERM 2116 1885958 - 1885926 - G 74 -7.8 -4.13343 | overlap 1885928 AGAAATGGCTGAAAA TAGCGCCTGTTT CATGTAAAC AAACAGGCGCTG AAGGGCGGTAATGAC TERM 2117 1885956 - 1885928 - G 80 -10.4 -3.65832 | overlap 1885926 AAATGGCTGAAAATA GCGCCTGTTT CATGTAAAC AAACAGGCGC TGAAGGGCGGTAATG TERM 2118 1886053 - 1886064 + r 72 -7.2 -3.91196 | opp_overlap 1886050 AAATAATAACTAGCT GCGG GTTG CCGC TTTCATCTCTGTGAC trpA 1886853 - 1886047 - | tryptophan synthase subunit alpha TERM 2119 1886173 - 1886190 + g 79 -8.3 -4.4078 | opp_overlap 1886162 1886165 AATAGCACCCGCCGC GCCCGCC GCCA GGCTGGC TTTTACTTGCGCGGG YPN_1673 1888043 - 1886853 - | tryptophan synthase subunit beta YPN_1674 1889627 - 1888200 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpD 1890629 - 1889631 - | anthranilate phosphoribosyltransferase TERM 2120 1889805 - 1889823 + g 73 -5.2 -4.63932 | opp_overlap 1889805 TTTACCTTGTAACAA CCGTGCTA AAA TGTCACGG TTTTCTTCCGGCATA TERM 2121 1890556 - 1890574 + g 71 -5.3 -4.46854 | gap 1 TCACCACGTACAATC GCC-GCAA ACAG TTGCTGGC TTTCTTCTTGGCTCA YPN_1676 1891222 - 1890644 - | anthranilate synthase component II YPN_1677 1892787 - 1891222 - | anthranilate synthase component I TERM 2122 1892863 - 1892849 - H 100 -11.4 -5.64274 | CTATCCATAAAAAAA CCCGCT ATT AGCGGG CTGAAGCAATCTGCA YPN_1678 1893203 - 1894138 + | hypothetical protein YPN_1679 1894155 - 1894775 + | hypothetical protein TERM 2123 1894988 - 1894973 - f 83 -9 -4.16681 | AATATTAGTGTAAAA TGTCCG GCCA CGGACA AGTGTGTGTGCCAGT TERM 2124 1895905 - 1895883 - g 70 -9 -3.55801 | ATTAATTTGCCGAAA GGCCTGCCAC GGG GTGGCTGGAC TGAACTGGATCTTAA YPN_1680 1895139 - 1896173 + | 23S rRNA pseudouridylate synthase B TERM 2125 1896238 - 1896275 + T 75 -5.7 -4.63542 | gap 1, opp_overlap 1896238 1896239, overlap 1896242 TAGCGACGTGAATAA TGCTTATTGCCGCAGTTT TTT GGACTGCGGCAATAT-TA TTTTTAACGCTTATA TERM 2126 1896242 - 1896272 + T 100 -15.6 -4.42235 | opp_overlap 1896238 1896239, overlap 1896238 GACGTGAATAATGCT TATTGCCGCAGTTT TTT GGACTGCGGCAATA TTATTTTTAACGCTT YPN_1681 1896940 - 1896296 - | cob(I)yrinic acid a,c-diamide adenosyltransferase YPN_1682 1897664 - 1896903 - | short chain dehydrogenase TERM 2127 1897047 - 1897060 + gH 76 -8.1 -4.21439 | overlap 1897055 ATCTTCATCGGGGAA TGCGG TCGC CCGCA TTTGTGTTCGGGTTC TERM 2128 1898174 - 1898209 + G 85 -12.8 -3.67 | gap 1, overlap 1898172 1898178 AGGGAGCATTGGGGC GCAGGAGGTCTCTTCAT TAC GTGAAGAGATCTC-TGC TATTTTGGCCGTTGC TERM 2129 1898178 - 1898206 + G 80 -13.3 -2.93891 | overlap 1898174 1898172 AGCATTGGGGCGCAG GAGGTCTCTTCAT TAC GTGAAGAGATCTC TGCTATTTTGGCCGT TERM 2130 1898359 - 1898371 + G 77 -10.5 -3.54951 | opp_overlap 1898356, overlap 1898370 CGGTTGATAAAGTTG CCGCC AGT GGCGG TTATATGATGGCCTG YPN_1683 1897851 - 1898882 + | putative periplasmic protease TERM 2131 1898945 - 1898914 - Tf 73 -7.3 -4.18488 | opp_overlap 1898914 1898915, overlap 1898915 AGTGATGGCAATAAA TGCAGGGGGTA ATCTGAACGG TACCCCCTGCT ATTTGCTACCAACCC TERM 2132 1898915 - 1898944 + TF 83 -10.8 -3.44848 | gap 1, opp_overlap 1898914 1898915, overlap 1898914 GTGATGGCAATAAAT GCAGGGGGTAATC TGAAC GGT-ACCCCCTGC TATTTGCTACCAACC TERM 2133 1898944 - 1898915 - Tf 79 -10.8 -3.10611 | opp_overlap 1898915 1898914, overlap 1898914 GTGATGGCAATAAAT GCAGGGGGTA ATCTGAACGG TACCCCCTGC TATTTGCTACCAACC YPN_1684 1899252 - 1899001 - | hypothetical protein YPN_1685 1899237 - 1899644 + | hypothetical protein TERM 2134 1899648 - 1899634 - fH 80 -5 -5.13344 | overlap 1899635 ACAGCAAGATAAAAA CCTTCT TTT AGAAGA AATAATTTAGGTAAA TERM 2135 1899896 - 1899880 - g 76 -6.5 -4.55446 | GAAGAAAGACGAAAA GGTTGCC TTA GTCAACC GTATGGGGGTCGATC TERM 2136 1900610 - 1900599 - g 87 -4.4 -5.40072 | TTGGTGTGAAAAAAA CCAT GATG ATGG CACAGCGCCTGTATG YPN_1686 1899671 - 1902286 + | DNA topoisomerase I TERM 2137 1902347 - 1902363 + F 100 -9.4 -5.46657 | opp_overlap 1902346 1902347 CTGACCTCGGTAAAG CCAGCC TTCGC GGCTGG TTTTTTATTGGGCTA cysB 1902683 - 1903657 + | transcriptional regulator CysB YPN_1688 1903993 - 1904850 + | hypothetical protein TERM 2138 1905286 - 1905304 + G 77 -11.7 -3.11768 | opp_overlap 1905284 TATTACTACTACAGC CTGCCGC AATTG GCGGCAG TGTTGGGTGATATCA YPN_1689 1905214 - 1907886 + | aconitate hydratase TERM 2139 1907992 - 1908018 + T 91 -10.2 -4.16033 | opp_overlap 1907992 TTATCAGCCTCTAAA GGGTAGGTATAA TTA TTGAACCTACCC TTATTCTTATTTCGC ribA 1908652 - 1908050 - | GTP cyclohydrolase II TERM 2140 1908163 - 1908179 + g 70 -4.3 -4.70626 | overlap 1908175 1908178 TATTGATCCCCGCTT GGGTGAG GAT CTCGACC TTTTTAGGGTTGTTG TERM 2141 1908611 - 1908590 - G 72 -3.7 -4.77438 | opp_overlap 1908595, overlap 1908592 ACCGACCATTAAAAA GTCACCC CAAGGAGT GGGTAAC TTTGCTTCTGCTACA YPN_1691 1908860 - 1909015 + | hypothetical protein YPN_1692 1909146 - 1909907 + | phosphatidylglycerophosphatase B YPN_1693 1910076 - 1910387 + | hypothetical protein TERM 2142 1911019 - 1911009 - g 74 -2.4 -5.08824 | overlap 1911010 GGGTTACTGAAAAAA GCGG CAA CGGC GGATAAACAATGTGC YPN_1694 1910394 - 1911563 + | hypothetical protein TERM 2143 1911650 - 1911631 - T 71 -10 -2.63073 | opp_overlap 1911630 1911631, overlap 1911630 1911628 CTTTGCTAATAAGAT CGGGTGAA CGGG TCCACCCG GTTGTTAGCTGTTGT YPN_1695 1911984 - 1911685 - | hypothetical protein YPN_1696 1912454 - 1913191 + | orotidine 5'-phosphate decarboxylase YPN_1697 1913191 - 1913517 + | translation initiation factor Sui1 TERM 2144 1913548 - 1913585 + T 100 -14.5 -3.62859 | gap 1, opp_overlap 1913548 1913553, overlap 1913553 TTTTCCGCGCAGATA TAAAATACGGCGT-TGAT ATT GTCAAACGCCGTATTTTA TTTAGAACTTCTAAT TERM 2145 1913585 - 1913548 - T 95 -13.8 -2.87132 | gap 1, opp_overlap 1913548 1913553, overlap 1913553 TTTTCCGCGCAGATA TAAAATACGGCGT-TGA TATTG TCAAACGCCGTATTTTA TTTAGAACTTCTAAT TERM 2146 1913580 - 1913553 - T 100 -9.3 -4.60797 | gap 1, opp_overlap 1913548 1913553, overlap 1913548 CGCGCAGATATAAAA TACGGCGT-TGA TATTG TCAAACGCCGTA TTTTATTTAGAACTT TERM 2147 1913553 - 1913580 + T 100 -10 -4.88405 | gap 1, opp_overlap 1913553 1913548, overlap 1913548 CGCGCAGATATAAAA TACGGCGT-TGAT ATT GTCAAACGCCGTA TTTTATTTAGAACTT YPN_1698 1913970 - 1913755 - | lipoprotein araD 1914450 - 1915145 + | L-ribulose-5-phosphate 4-epimerase TERM 2148 1915167 - 1915188 + T 70 -5.1 -4.56597 | AACATAAATAATGAG CCCGTGT TCAGTCTT GCACGGG TTTTTCCAGCCAGAG YPN_1700 1915422 - 1915174 - | hypothetical protein YPN_1701 1915756 - 1916421 + | fructose-6-phosphate aldolase TERM 2149 1916507 - 1916477 - T 100 -13.5 -4.18506 | overlap 1916463 1916480 TGAGCGGTAAAAGAA TAACGCCCTATAA AATCA CTATAGGGCGTTA CGGTGTCACTAATTT TERM 2150 1916504 - 1916480 - T 93 -10.8 -4.20868 | overlap 1916463 1916477 GCGGTAAAAGAATAA CGCCCTATAA AATCA CTATAGGGCG TTACGGTGTCACTAA YPN_1702 1916867 - 1916538 - | hypothetical protein YPN_1703 1918902 - 1916836 - | carbon starvation protein A TERM 2151 1917092 - 1917102 + gr 73 -5.4 -4.74132 | opp_overlap 1917092 GCTTGAGCAAGGAAG CCAA TAC TTGG TTTTTCATGGAATAT TERM 2152 1917618 - 1917638 + gr 70 -7.5 -3.89346 | overlap 1917620 1917621 AGTTTTCACCAACAT CTTTGGCGA CCA TCGCCAGTG TTTCTGGCGTAACGA TERM 2153 1917620 - 1917636 + gr 73 -8.7 -3.53733 | overlap 1917618 1917621 TTTTCACCAACATCT TTGGCGA CCA TCGCCAG TGTTTCTGGCGTAAC TERM 2154 1917621 - 1917635 + gr 71 -10 -2.71918 | overlap 1917620 1917618 TTTCACCAACATCTT TGGCGA CCA TCGCCA GTGTTTCTGGCGTAA TERM 2155 1919198 - 1919233 + r 71 -9.6 -3.03124 | opp_overlap 1919203, overlap 1919203 GCAAACATAACATTA AAAAAGCCGTCGGGGG AATT CCTCCGACGGCTATCA TGTTAAAACATAAGA TERM 2156 1919228 - 1919203 - R 100 -16.1 -5.30189 | opp_overlap 1919198 1919203 CATAACATTAAAAAA GCCGTCGGGGG AATT CCTCCGACGGC TATCATGTTAAAACA TERM 2157 1919203 - 1919228 + r 100 -18.3 -2.9155 | opp_overlap 1919203, overlap 1919198 CATAACATTAAAAAA GCCGTCGGGGG AATT CCTCCGACGGC TATCATGTTAAAACA YPN_1704 1921186 - 1919252 - | exoribonuclease II TERM 2158 1920761 - 1920772 + g 76 -7.2 -4.2828 | opp_overlap 1920761 TAGGTCAGCCTGAAA GGCG CGGT CGCC TTTTAATGGGTGGCG TERM 2159 1920954 - 1920944 - G 70 -3.2 -4.86033 | AAAGCGGGATAAAAA TGGC TCA ACCA ATGTTTCAGGTTCAG TERM 2160 1921940 - 1921911 - g 86 -6.5 -4.95547 | gap 1, opp_overlap 1921914 1921928, overlap 1921914 GTTACAAGAAGAAAA TAATGCC-TACCGT AAA ACGGTATGGCATCT CTTGCCGCTACTGAT TERM 2161 1921937 - 1921914 - g 91 -10.4 -4.55653 | gap 1, opp_overlap 1921914 1921928, overlap 1921911 ACAAGAAGAAAATAA TGCC-TACCGT AAA ACGGTATGGCA TCTCTTGCCGCTACT TERM 2162 1921914 - 1921937 + G 71 -10.4 -3.08073 | gap 1, opp_overlap 1921914 1921911, overlap 1921928 ACAAGAAGAAAATAA TGCC-TACCGT AAA ACGGTATGGCA TCTCTTGCCGCTACT YPN_1705 1921855 - 1923165 + | integral membrane protein TERM 2163 1923683 - 1923665 - g 70 -4.6 -4.66609 | opp_overlap 1923665 1923669 TATGGTACGCAAAAA GCATTAAA CGA TTTATTGC TGTCTGATTACAGCC YPN_1706 1923203 - 1924201 + | hypothetical protein YPN_1707 1925025 - 1924384 - | endonuclease III TERM 2164 1924991 - 1925010 + g 85 -3.5 -5.48514 | TTGTTATCCCGCAGA CGGGTCA AAATAG TGACACG TTTTTCTTTATTCAT YPN_1708 1925723 - 1925022 - | SoxR-reducing system protein RsxE TERM 2165 1925600 - 1925579 - G 70 -8.7 -3.59202 | TATTGGTACACACAA GGACTAGCG TGGT CGCTAACCC CAGCCCCAATGCGTT TERM 2166 1925693 - 1925706 + g 70 -3.1 -4.75174 | TATTTTTCCACAACC CTTGT GCTA ACAGG TTTTTCGCTTCACTC YPN_1709 1926349 - 1925720 - | electron transport complex protein RnfG rnfD 1927453 - 1926359 - | electron transport complex protein RnfD TERM 2167 1928252 - 1928230 - g 90 -8.4 -5.03314 | overlap 1928232 CGTACCTTTAAAAAA CGGTTTGGCG TGA CACCAAACAG CTTCCGCCAGATGAA YPN_1711 1927942 - 1928835 + | AraC family transcription regulator YPN_1712 1930919 - 1928940 - | electron transport complex protein RnfC TERM 2168 1929920 - 1929950 + g 77 -9.8 -3.6682 | opp_overlap 1929915 CCCCCATAATCACCA TTGGCGGGTTTTGA GGC TTGAAACCGGCCAA TTTAAGTAAATACAG TERM 2169 1930544 - 1930556 + g 70 -9.1 -3.61398 | CGCGCTGGCGATAGT CAGCC CAC GGCTG TTGTTCACGCCAGCG YPN_1713 1931535 - 1930969 - | electron transport complex protein RnfB TERM 2170 1931297 - 1931316 + g 86 -9.2 -4.54301 | AGTTTCAGCATCACC TGCTCGCC ACCC GGCGCGCA TTTGTTGATTTTTTC YPN_1714 1932116 - 1931535 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 2171 1932169 - 1932144 - R 87 -5.4 -5.55855 | CCTAAAAAAATAAAA GCCGCCTATT ATCCAA AATTGACGGC CCGACGACAACAGAT YPN_1715 1932687 - 1932244 - | hypothetical protein TERM 2172 1932314 - 1932303 - G 80 -4.4 -5.1963 | overlap 1932305 TGTAAGGAACAAAAA TAGC TGCA GCTA GCAGCGGCCACCCGA TERM 2173 1932319 - 1932305 - G 71 -7.1 -4.21997 | overlap 1932303 TAAGGAACAAAAATA GCTGC AGCTA GCAGC GGCCACCCGAGTGTT YPN_1716 1932944 - 1932792 - | hypothetical protein TERM 2174 1933942 - 1933926 - gH 76 -10.9 -2.59793 | overlap 1933925 1933923 TGAGTTAGATAATAT CCGTGAT TTC ATCACGG GTTCGGCCCTGACAT TERM 2175 1934121 - 1934136 + GH 82 -7.5 -4.65895 | overlap 1934110 TCTCTGTGGTTTTGC CGCGC AAAACG GCGCG TTTTTGACTGAAACG YPN_1717 1933162 - 1934946 + | hypothetical protein YPN_1718 1934894 - 1935220 + | RTX toxin ABC transporter ATP binding/permease subunits YPN_1719 1935245 - 1936246 + | hypothetical protein YPN_1720 1936222 - 1936614 + | toxin ABC transporter YPN_1721 1936616 - 1938754 + | toxin transport protein TERM 2176 1938880 - 1938896 + T 70 -5.1 -4.49311 | opp_overlap 1938842 1938838, overlap 1938844 1938881 CAGGCCTCTGAGGGT GTCGCTA TCA TAGCGAA TTTTATAATACTGAT YPN_1722 1940446 - 1938944 - | L-arabinose isomerase YPN_1723 1942233 - 1940530 - | ribulokinase TERM 2177 1942888 - 1942846 - g 74 -6.8 -4.38712 | CCGATGGTGAGAAAA CCCTGAACGCCATCGACAGC CTG GCGGCCAGTGGTGCCCAAGG TTTTGTTATTTGTAC YPN_1724 1942641 - 1943624 + | L-arabinose-binding periplasmic protein precursor TERM 2178 1944886 - 1944873 - g 70 -8.1 -3.71848 | CTGTCTGATTAACAA CCGCT GGGA AGCGG ATAATGCGTTGCTGC araG 1943722 - 1945293 + | L-arabinose transporter ATP-binding protein araH 1945311 - 1946360 + | L-arabinose transporter permease protein YPN_1727 1946581 - 1947258 + | arabinose operon regulatory protein YPN_1728 1947251 - 1947511 + | helix-turn-helix, AraC type TERM 2179 1948678 - 1948662 - g 80 -2.2 -5.49569 | GATCAACAGAAAAAA GCACTG CCGAT CATTGC TAAAAATTGATGTTT YPN_1729 1947639 - 1948688 + | putative oxidoreductase TERM 2180 1948733 - 1948760 + F 100 -7.8 -6.32976 | gap 1, opp_overlap 1948731 1948746 AGGGTGGAAATATCT CTCTGGG-CAC AATCTCC GTGGCCCAGAG TTTTTTTATTTTTTT TERM 2181 1949493 - 1949473 - g 90 -6.1 -5.27923 | opp_overlap 1949473, overlap 1949475 GAACGGCACAAAAAA CTGGTCAAT ATC ACTGACCGG TCATCTATTTTGTTG YPN_1730 1948882 - 1949910 + | membrane protein YPN_1731 1949891 - 1950049 + | hypothetical protein TERM 2182 1950266 - 1950254 - g 100 -4.8 -5.98781 | GATAATGAAAAAAAA CTGC ATATA GCAG AAATAGATAAAGGTA YPN_1732 1950116 - 1950715 + | hypothetical protein TERM 2183 1950741 - 1950712 - T 91 -13.7 -2.51657 | opp_overlap 1950718, overlap 1950718 AAAGAGAATAGAGAT TTAAAACGGAGCC AATG GGCTCCGTTTTTA TCAAACAAATATAAT TERM 2184 1950718 - 1950735 + T 100 -12.7 -4.82901 | opp_overlap 1950712 1950718 AATAGAGATTTAAAA CGGAGCC AATG GGCTCCG TTTTTATCAAACAAA TERM 2185 1950735 - 1950718 - T 100 -12.7 -4.27861 | opp_overlap 1950718, overlap 1950712 AATAGAGATTTAAAA CGGAGCC AATG GGCTCCG TTTTTATCAAACAAA TERM 2186 1950882 - 1950861 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_1733 1952064 - 1950856 - | transposase for the IS285 insertion element YPN_1734 1953631 - 1952126 - | hypothetical protein TERM 2187 1952445 - 1952455 + g 79 -5.4 -5.00616 | ATTGGAATGCTCAGG TTGG CGT CCAA TTTTTTCACCGCGGG TERM 2188 1952530 - 1952548 + g 74 -7.4 -4.13748 | TCAGTTCGATATTCA GGGTAAAG GTA CTTTCCCC TTTAGTATTTTTCCA TERM 2189 1953744 - 1953731 - R 71 -3.1 -5.07107 | GAAATCCCCAAAAAA GAAGA TATA TCTCC CAAATAATATAGGCC YPN_1735 1955142 - 1953871 - | mannose-6-phosphate isomerase TERM 2190 1954689 - 1954708 + g 70 -2.8 -4.86731 | gap 1, overlap 1954692 TGCGCTCAGCCGCAT CCA-GTGGG ATA CCTGCCTGG TTTTCTTTAGCAAAA fumC 1955330 - 1956727 + | fumarate hydratase TERM 2191 1956750 - 1956770 + T 79 -6.8 -4.62783 | opp_overlap 1956750 ACATTGTTATATTAA CGCCGG GGTGGATTA CCGGCG TTTTTACAGTGGCTA YPN_1737 1957781 - 1956807 - | DNA replication terminus site-binding protein TERM 2192 1957152 - 1957165 + g 82 -3.7 -5.29782 | TGGAGGAACAGCTCG GCCAG CATT CAGGC TTTTTTCTAGCTGTA YPN_1738 1959245 - 1958127 - | membrane protein YPN_1739 1959458 - 1960336 + | LysR family transcriptional regulator TERM 2193 1960410 - 1960397 - f 87 -5.3 -5.47846 | overlap 1960404 AAGGAAAAAAGAAAA CACAT GATT ATGTG CAGCAAATCACATAA YPN_1740 1960550 - 1961761 + | transcriptional regulator YPN_1741 1961734 - 1962348 + | dethiobiotin synthetase YPN_1742 1963763 - 1962471 - | putative voltage-gated ClC-type chloride channel ClcB TERM 2194 1963020 - 1963006 - G 74 -4.9 -4.85782 | GCTTTTAAAAATAAA GGGCC GCTGA AGCCC GCCATTAATCCTAGA YPN_1743 1965358 - 1964351 - | LacI family transcriptional regulator YPN_1744 1965901 - 1965431 - | hypothetical protein YPN_1745 1966395 - 1966045 - | ribose-binding periplasmic protein TERM 2195 1967103 - 1967078 - g 70 -10.5 -3.01708 | gap 1, opp_overlap 1967078 1967077 CAAAGGGGATAGATA TTGCTCCCGCAA TCG TCGCGGG-GCAA ATTGATATAGCGGCC TERM 2196 1967569 - 1967548 - g 75 -8.7 -3.93583 | GAAGCCATGTATAAA GAGAAGCCA GAGG TGGCTGCTC GCGTACTTAAACTGT YPN_1746 1966834 - 1967865 + | hypothetical protein TERM 2197 1968274 - 1968294 + G 95 -2.3 -5.86965 | overlap 1968275 GCGATGCTGTGGTTC GGCCTGGGG AAT CCGCCGGCA TTTTTTTTGATAAGT YPN_1747 1967869 - 1968690 + | transport system permease TERM 2198 1968825 - 1968837 + G 71 -6.3 -4.29493 | AATAAATCTTCATAT TTCAC ATG GTGAA TTTGTCTGTTTACTG YPN_1748 1968700 - 1969518 + | ATPase TERM 2199 1969891 - 1969924 + T 100 -10.3 -4.74453 | gap 1, opp_overlap 1969892 1969894, overlap 1969894 AGCTCTCTCAATTCA ATACGCAGGCGG-TGA TCA TCATCCGCCTGCGTTG TTTTTCAATCTATTC TERM 2200 1969923 - 1969892 - T 100 -13.8 -3.17075 | gap 1, opp_overlap 1969891 1969894, overlap 1969894 GCTCTCTCAATTCAA TACGCAGGCGG-TGA TCA TCATCCGCCTGCGTT GTTTTTCAATCTATT TERM 2201 1969894 - 1969921 + T 100 -16.4 -4.46215 | gap 1, opp_overlap 1969892 1969894, overlap 1969891 TCTCTCAATTCAATA CGCAGGCGG-TGA TCA TCATCCGCCTGCG TTGTTTTTCAATCTA TERM 2202 1969921 - 1969894 - T 100 -16.4 -3.14878 | gap 1, opp_overlap 1969894 1969891, overlap 1969892 TCTCTCAATTCAATA CGCAGGCGG-TGA TCA TCATCCGCCTGCG TTGTTTTTCAATCTA YPN_1749 1971451 - 1969943 - | AMP nucleosidase TERM 2203 1970600 - 1970626 + g 73 -3 -5.00616 | overlap 1970602 CTGCCCATTTTTGGC TATCAGGTGATA GGC TGGCATCTGATG TTTTTTCCACGCCAG TERM 2204 1970949 - 1970967 + g 90 -11.8 -4.09243 | ATCGTTTCAATTCCG TCGGTGAT GCC ATCACCGA TTTTAGCCAGATCTG TERM 2205 1971977 - 1971957 - g 72 -3.9 -4.77925 | overlap 1971958 AAAAAATCGGAAAAA GCCGCACAA CAG TTGTTCGGG GCATTACTCGCGAAA TERM 2206 1972218 - 1972204 - g 73 -5.6 -4.62904 | opp_overlap 1972211 AAATACGGGCAAAAA CGGTTG TCA CACCCG CAGCGGTTGAGTTAT YPN_1750 1971639 - 1973072 + | virulence factor TERM 2207 1973135 - 1973147 + G 79 -7.7 -4.54727 | overlap 1973122 TTCAGGATAGTGGGA TCCAG TTC CTGGA TTTTGCTTTAACGCC TERM 2208 1973267 - 1973287 + G 76 -11.1 -3.30243 | AATATTCACTGATGC TCCCAGGGG CAG CCCCTGAGA TTGTGAAACCTGAAT YPN_1751 1973077 - 1976148 + | virulence factor TERM 2209 1976648 - 1976674 + GF 81 -9.4 -3.82604 | CGCCCGTGCTTTCTT GCTGGATTGCCC TCA GGAAAATCCAGC TTATTCGTTGGATGA TERM 2210 1976828 - 1976811 - gf 73 -8.4 -3.62616 | CACCACGACACACAA CGCCAG AAAGAA CTGGCG ACTCACTTCTGGCCT YPN_1752 1976145 - 1977422 + | virulence factor YPN_1753 1977325 - 1978620 + | virulence factor TERM 2211 1978666 - 1978692 + T 95 -7.9 -5.00616 | opp_overlap 1978666 AACGTGCCACAAAAA TGCGCAACTCC CCGAC GGAGAAGCGCA TTTTTTAAACAGCAG TERM 2212 1978692 - 1978666 - T 91 -7.9 -4.84017 | opp_overlap 1978666 AACGTGCCACAAAAA TGCGCAACTCC CCGAC GGAGAAGCGCA TTTTTTAAACAGCAG YPN_1754 1979583 - 1978789 - | lipoprotein TERM 2213 1980098 - 1980122 + H 100 -15 -4.96501 | gap 1, opp_overlap 1980098 AGAAAGATTCCCAAA CCCCGC-CGGC GCCA GCCGAGCGGGG TTTCTTTTTATCGCC TERM 2214 1980122 - 1980098 - H 100 -15 -3.6292 | gap 1, opp_overlap 1980098 AGAAAGATTCCCAAA CCCCGC-CGGC GCCA GCCGAGCGGGG TTTCTTTTTATCGCC TERM 2215 1981048 - 1981032 - g 77 -10.9 -3.59979 | TCGGGCCATCGGAAA GGCAGAA CAA TTCTGCC CTCATGCCAATATTA YPN_1755 1980178 - 1981845 + | acetolactate synthase catalytic subunit YPN_1756 1981847 - 1982149 + | acetolactate synthase 1 regulatory subunit TERM 2216 1982157 - 1982199 + T 100 -15 -3.65046 | opp_overlap 1982146 1982145 1982167, overlap 1982158 AAAGGTGACGTTGTC ACACGTTAAACCCTGTCG TTACTGC CGACAGGGTTTAACGGGC TTATTCGAGTAGGGA TERM 2217 1982158 - 1982198 + T 100 -18.5 -2.78813 | opp_overlap 1982145 1982167, overlap 1982157 AAGGTGACGTTGTCA CACGTTAAACCCTGTCG TTACTGC CGACAGGGTTTAACGGG CTTATTCGAGTAGGG TERM 2218 1982189 - 1982167 - T 82 -10.6 -3.63627 | opp_overlap 1982158 1982157 TTGTCACACGTTAAA CCCTGTCG TTACTGC CGACAGGG TTTAACGGGCTTATT YPN_1757 1982890 - 1982216 - | nucleotidase YPN_1758 1985417 - 1983021 - | hypothetical protein TERM 2219 1985535 - 1985519 - R 71 -8.7 -3.39908 | CTTTTTTAAAACAGA CTGCCGT AAC ACAGCAG AAAAACCCATTAATT TERM 2220 1985938 - 1985916 - R 100 -9.9 -4.96646 | gap 1 GGACATAAGCAAAAA TCCCGGC-CA TTAC TGCGCCGGGA CGTTCCAGTGAGATA YPN_1759 1987408 - 1985963 - | alkaline phosphatase YPN_1760 1987649 - 1988167 + | methylated-DNA--protein-cysteine methyltransferase YPN_1761 1988240 - 1988992 + | fumarate/nitrate reduction transcriptional regulator YPN_1762 1989127 - 1990083 + | universal stress protein UspE TERM 2221 1990144 - 1990121 - T 100 -13.2 -4.28049 | CGTAAAATCCTAAAA TAAGGGCCAC CGAA GTGGCCCTCA GACTGCTGACAAACC TERM 2222 1990230 - 1990204 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1990213, overlap 1990205 1990220 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2223 1990231 - 1990205 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1990213, overlap 1990204 1990220 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2224 1990330 - 1990303 - T 100 -15.6 -3.62046 | overlap 1990304 GCACTTTGTCAATAA CCTCAGGGCCAC CGAA GTGGCCCTGAGC AATACAATGGATGTT TERM 2225 1990329 - 1990304 - T 100 -19.1 -2.77013 | overlap 1990303 CACTTTGTCAATAAC CTCAGGGCCAC CGAA GTGGCCCTGAG CAATACAATGGATGT pntB 1991752 - 1990358 - | pyridine nucleotide transhydrogenase pntA 1993351 - 1991825 - | NAD(P) transhydrogenase subunit alpha TERM 2226 1992298 - 1992323 + g 76 -3.2 -5.19879 | CGCGAATCACGGTAT CGTCGAAATC AATATC GATCTCGCCG TTTTTCTCTTTGCAA YPN_1765 1993881 - 1994834 + | hypothetical protein TERM 2227 1994841 - 1994865 + F 82 -7.8 -4.4727 | overlap 1994844 TTCAAATAATTATCT TAAGGGCGGC CAAGT GCTGCCCTTC TTTTATCCGTGTTGC TERM 2228 1994844 - 1994862 + F 88 -9.5 -4.33785 | overlap 1994841 AAATAATTATCTTAA GGGCGGC CAAGT GCTGCCC TTCTTTTATCCGTGT TERM 2229 1995642 - 1995660 + G 80 -10.4 -3.68619 | GCATCGCATTTAGCC TCGATACT TTT AGTATCGA TTTCACTGGCTTAGC YPN_1766 1995104 - 1996495 + | amino acid antiporter YPN_1767 1996935 - 1996519 - | hypothetical protein TERM 2230 1996744 - 1996766 + g 82 -12 -3.646 | opp_overlap 1996731, overlap 1996745 TACTTGCAGCGCCAA TGCCGTAAGC TGA GCTTGCGGCG TTCTCTCTAATTCAG TERM 2231 1996745 - 1996765 + g 79 -13.3 -2.78278 | opp_overlap 1996731, overlap 1996744 ACTTGCAGCGCCAAT GCCGTAAGC TGA GCTTGCGGC GTTCTCTCTAATTCA YPN_1768 1997232 - 1997978 + | DNA-binding transcriptional regulator RstA YPN_1769 1998006 - 1999283 + | sensor protein RstB YPN_1770 1999377 - 2000072 + | carboxypeptidase TERM 2232 2001316 - 2001337 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1771 2000134 - 2001342 + | transposase for the IS285 insertion element YPN_1772 2001366 - 2002199 + | carboxypeptidase TERM 2233 2002243 - 2002219 - T 100 -9.9 -4.43877 | opp_overlap 2002222, overlap 2002221 2002222 TAATTCGGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2234 2002241 - 2002221 - T 100 -12.5 -3.81958 | opp_overlap 2002222, overlap 2002219 2002222 ATTCGGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2235 2002240 - 2002222 - T 100 -16 -2.88452 | opp_overlap 2002222, overlap 2002221 2002219 TTCGGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2236 2002222 - 2002240 + T 100 -16 -4.8048 | opp_overlap 2002221 2002219 2002222 TTCGGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_1773 2002779 - 2002321 - | transposase for the IS1541 insertion element TERM 2237 2002910 - 2002892 - H 100 -16 -3.07307 | opp_overlap 2002892 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2238 2002892 - 2002910 + H 100 -16 -4.37092 | opp_overlap 2002892 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2239 2004251 - 2004239 - g 76 -4.7 -5.03314 | CTGACGCGGAAAAAA GCCTG AAC CTGGC CGGCGCGTGCGTCAG TERM 2240 2005391 - 2005378 - g 78 -3.8 -5.1861 | CTGAGGAGTAAAAAA TCCG GCGATA CGGA AACGGAAGGCCTGCA TERM 2241 2005665 - 2005640 - g 73 -6.1 -4.47328 | AAGCGGATTACAAAA CCGTCCGCTAC TCTG GTAAGGAACGG GATGCGACGGGGTTG YPN_1774 2003749 - 2006373 + | insecticidal toxin complex YPN_1775 2006376 - 2006732 + | hypothetical protein TERM 2242 2006715 - 2006725 + T 75 -5.4 -4.78752 | ACTCCAGAACATAGT CCAA TTT TTGG TTTTTAAGTTGTAGT TERM 2243 2006791 - 2006760 - T 86 -10.4 -3.79043 | opp_overlap 2006764, overlap 2006779 CATTACTAACCGAAA GATAGTTATATTCA GAAA TGGATATAACTATC CTAAAAAATTCACAC YPN_1776 2006994 - 2006836 - | invertase protein TERM 2244 2006876 - 2006895 + g 70 -4.2 -4.65895 | gap 1, opp_overlap 2006876 GCTTCCATAACGAGA CGCG-CCTG TTT TGGGTCGCG TTTTTGCATGACCAA YPN_1777 2007715 - 2007242 - | membrane protein TERM 2245 2008288 - 2008273 - H 71 -8.2 -3.41051 | opp_overlap 2008272 CTACTCTGATTATAA CGACCC AACG GGGCCG GTATATGAATAGAAC YPN_1778 2008319 - 2008633 + | acid shock protein TERM 2246 2008718 - 2008701 - f 93 -12.7 -3.09208 | opp_overlap 2008701, overlap 2008703 AAATGATTCACTCAA CACCCGG TTCT CCGGGTG TTTTTTATCAGGAGT TERM 2247 2008701 - 2008718 + F 100 -12.7 -5.24531 | opp_overlap 2008701 2008703 AAATGATTCACTCAA CACCCGG TTCT CCGGGTG TTTTTTATCAGGAGT TERM 2248 2008716 - 2008703 - f 72 -9.5 -3.10056 | opp_overlap 2008701, overlap 2008701 ATGATTCACTCAACA CCCGG TTCT CCGGG TGTTTTTTATCAGGA YPN_1779 2008967 - 2009803 + | pepetidase YPN_1780 2010182 - 2009859 - | DNA-binding phage-related protein TERM 2249 2010837 - 2010797 - R 100 -8.4 -5.48514 | gap 1, overlap 2010800 ACTAAGAAATAAAAA GAATTCGACGCCTAAGTCT AGAT AG-CTCAGGCGTCGAATAG GGGCATCAATCAGAC TERM 2250 2010834 - 2010800 - R 100 -14.5 -4.78345 | gap 1, overlap 2010797 AAGAAATAAAAAGAA TTCGACGCCTAAGTCT AGAT AG-CTCAGGCGTCGAA TAGGGGCATCAATCA YPN_1781 2014689 - 2010847 - | ATP-dependent RNA helicase HrpA TERM 2251 2012390 - 2012403 + g 76 -8.1 -4.19624 | opp_overlap 2012390 2012388 TCATCGACCAGAATA TCCCG CCGA CGGGA TTTGTGTTCCAACTC TERM 2252 2015073 - 2015054 - H 72 -6.4 -4.3351 | overlap 2015056 ATAAAATCGAACAAA GAGCGCAA AATA TTGCGCTA TCACTGGTAGCAAAA TERM 2253 2015071 - 2015056 - H 78 -9 -3.75005 | overlap 2015054 AAAATCGAACAAAGA GCGCAA AATA TTGCGC TATCACTGGTAGCAA YPN_1782 2015157 - 2015762 + | azoreductase TERM 2254 2015861 - 2015878 + T 100 -14.1 -5.35222 | AGCCATGTGATGATT GCGCGCC AACC GGCGCGC TTTTTTATGCCTTTT YPN_1783 2016839 - 2015883 - | transcriptional regulatory protein TERM 2255 2016988 - 2016977 - H 70 -7.2 -3.86283 | TTAACCTACACGAAA GGGC AAAT GCCC AAATATTGAATTTAT TERM 2256 2017754 - 2017731 - g 73 -3.1 -5.00616 | gap 1, overlap 2017732 GGGTGTTGGAAAAAA CCGGTATCGT AGATA ACGCT-CCGG TGATGGGGGAATCAT YPN_1784 2017049 - 2018440 + | mannitol dehydrogenase YPN_1785 2019030 - 2018659 - | hypothetical protein YPN_1786 2019234 - 2019040 - | lipoprotein YPN_1787 2021927 - 2019231 - | hypothetical protein TERM 2257 2019565 - 2019551 - G 74 -11.4 -3.13908 | opp_overlap 2019548 AACGCAACCAGTCAA TCGCCG CAC CGGCGA CAGTATTGCTCTCAC YPN_1788 2022193 - 2023185 + | D-lactate dehydrogenase YPN_1789 2023255 - 2023707 + | heat-inducible protein YPN_1790 2024178 - 2023765 - | lipoprotein YPN_1791 2024391 - 2025050 + | putative Mg(2+) transport ATPase YPN_1792 2025442 - 2025110 - | quaternary ammonium compound-resistance protein TERM 2258 2028367 - 2028382 + G 75 -10.4 -3.40403 | opp_overlap 2028365 CGCTGTTCGAATATT CCGGAG CCTG CTCCGG TTGTGGTGAAACACC YPN_1793 2025921 - 2029454 + | pyruvate-flavodoxin oxidoreductase TERM 2259 2029489 - 2029514 + F 100 -13.4 -5.18995 | TGTGCGATTTACTGA GCCAGTTAGC TAAACC GCTAACTGGC TTTTTCTATTATCTT TERM 2260 2029799 - 2029789 - g 86 -8.2 -4.64144 | overlap 2029791 AACAAGCTGCAAAAA CGGC TGC GCCG TAACGTCGGCCAAGC TERM 2261 2030645 - 2030632 - g 74 -2.3 -5.09685 | GAAGACACAGAAAAA CGTCC ACCA GTACG CCTTGATGTGTTGGA YPN_1794 2029729 - 2030670 + | C32 tRNA thiolase YPN_1795 2030941 - 2031945 + | hypothetical protein TERM 2262 2031948 - 2031971 + F 71 -8.8 -3.38991 | opp_overlap 2031949 2031951, overlap 2031946 2031951 TCATAGCCAGTAAAA ATAGTGGGCC AAAT GGCCCACTGA TGTTATTGGCAAAGT TERM 2263 2031970 - 2031949 - f 100 -10.1 -4.76041 | opp_overlap 2031948 2031946 2031951, overlap 2031951 CATAGCCAGTAAAAA TAGTGGGCC AAAT GGCCCACTG ATGTTATTGGCAAAG TERM 2264 2031968 - 2031951 - f 100 -12.7 -3.99327 | opp_overlap 2031948 2031946 2031951, overlap 2031949 TAGCCAGTAAAAATA GTGGGCC AAAT GGCCCAC TGATGTTATTGGCAA TERM 2265 2031951 - 2031968 + F 89 -12.7 -2.85545 | opp_overlap 2031951 2031949, overlap 2031948 2031946 TAGCCAGTAAAAATA GTGGGCC AAAT GGCCCAC TGATGTTATTGGCAA TERM 2266 2032062 - 2032088 + F 80 -8.7 -3.9749 | gap 1, overlap 2032062 CTTCCATGGGGGCTA G-ATCCGCGCCA CTAC TGGCGCGGACGC TTTACTCTTCTGCCT TERM 2267 2032458 - 2032444 - g 100 -7.2 -5.26875 | opp_overlap 2032444 TTTCTAATGAAAAAA TCAAGA GCA TCTTGA TGGATTACTCATCCC YPN_1796 2032257 - 2033096 + | regulatory protein YPN_1797 2033355 - 2033146 - | hypothetical protein TERM 2268 2033272 - 2033249 - G 100 -14 -5.60993 | CGGCGCACAAAAAAA TGCCGATGTT TTTC AACATCGGCA CCGTAACAATTAAAT zntB 2034483 - 2033470 - | zinc transporter TERM 2269 2034665 - 2034635 - R 93 -9 -4.54323 | opp_overlap 2034637, overlap 2034637 2034641 AAGGACAAGAATAAA TGCAAAGGCGGATT TAA AATCCGCCTCTGTT AATTAGTTAAAAACA TERM 2270 2034663 - 2034637 - R 100 -16 -2.57496 | opp_overlap 2034637, overlap 2034635 2034641 GGACAAGAATAAATG CAAAGGCGGATT TAA AATCCGCCTCTG TTAATTAGTTAAAAA TERM 2271 2034637 - 2034663 + r 100 -13.8 -3.45366 | opp_overlap 2034637 2034635 2034641 GGACAAGAATAAATG CAAAGGCGGATT TAA AATCCGCCTCTG TTAATTAGTTAAAAA TERM 2272 2034659 - 2034641 - R 100 -13.2 -3.95772 | opp_overlap 2034637, overlap 2034637 2034635 AAGAATAAATGCAAA GGCGGATT TAA AATCCGCC TCTGTTAATTAGTTA YPN_1799 2036312 - 2034696 - | periplasmic murein peptide-binding protein YPN_1800 2036690 - 2037460 + | murein peptide amidase A YPN_1801 2038476 - 2037502 - | mandelate racemase / muconate lactonizing protein TERM 2273 2038511 - 2038527 + H 71 -9.5 -2.98368 | overlap 2038510 ACAGTTTTAGCTTAG GTATGAG ACC CTCATAC GTTTATCCGTTAAGT TERM 2274 2038533 - 2038553 + H 70 -2.5 -5.01732 | overlap 2038534 ACCCTCATACGTTTA TCCGTTAAG TCT TTAAACGGG TTTTTTAGCGAACTT tpx 2038639 - 2039142 + | thiol peroxidase TERM 2275 2039242 - 2039218 - f 88 -10 -4.18494 | gap 1, opp_overlap 2039218 TATCGTGACTCAAAA CGGCTGC-CCC ACTC GGGTACAGCCG TTTTTTATTGTGCCC TERM 2276 2039218 - 2039242 + F 100 -7.8 -5.55769 | gap 1, opp_overlap 2039218 TATCGTGACTCAAAA CGGCTG-CCCC ACTC GGGTACAGCCG TTTTTTATTGTGCCC TERM 2277 2039282 - 2039264 - f 100 -16 -4.37092 | opp_overlap 2039264 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2278 2039264 - 2039282 + F 100 -16 -3.07307 | opp_overlap 2039264 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1803 2039395 - 2039853 + | transposase for the IS1541 insertion element TERM 2279 2039920 - 2039966 + T 95 -7.2 -5.5762 | opp_overlap 2039911 2039934, overlap 2039927 2039931 2039933 2039934 AACAGAGCCTTATAG GCGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTACTC TTTTTTATGTTTGAT TERM 2280 2039927 - 2039959 + T 100 -11.3 -4.20024 | opp_overlap 2039934, overlap 2039920 2039931 2039933 2039934 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTACTCTTTTTTAT TERM 2281 2039931 - 2039955 + T 100 -9.9 -4.60648 | opp_overlap 2039934, overlap 2039927 2039920 2039933 2039934 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTACTCTTTT TERM 2282 2039933 - 2039953 + T 100 -12.5 -3.88114 | opp_overlap 2039934, overlap 2039931 2039927 2039920 2039934 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTACTCTT TERM 2283 2039934 - 2039952 + T 100 -16 -2.91241 | opp_overlap 2039934, overlap 2039933 2039931 2039927 2039920 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTACTCT TERM 2284 2039952 - 2039934 - T 100 -16 -4.8048 | opp_overlap 2039933 2039931 2039927 2039920 2039934 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTACTCT YPN_1804 2041577 - 2040000 - | DNA-binding transcriptional regulator TyrR YPN_1805 2041913 - 2042359 + | hypothetical protein YPN_1806 2042421 - 2042879 + | hypothetical protein YPN_1807 2043950 - 2042889 - | hypothetical protein TERM 2285 2043310 - 2043328 + g 75 -8.8 -3.85817 | opp_overlap 2043304 2043303 ATCATCAACGCTGAT TCAGCAGC ATA GCGGCTGA TTTCTGCCCGAGCCT YPN_1808 2045344 - 2043947 - | hypothetical protein TERM 2286 2045047 - 2045016 - G 74 -7.3 -4.1899 | gap 1, opp_overlap 2045033 TCACTGGAGCGAAAA CGTAACGCCAGACG GATTT CG-CTGACGCCACG GGTCGGCGTTGGCCA YPN_1809 2045567 - 2045325 - | peripheral inner membrane phage-shock protein YPN_1810 2046011 - 2045652 - | DNA-binding transcriptional activator PspC TERM 2287 2045898 - 2045877 - G 76 -3.1 -5.09173 | gap 1, overlap 2045879 GAATAGGCCAAAAAA CAGTGATAAC ACC ATTATCAC-G CGAACCAACCGTACT TERM 2288 2045897 - 2045879 - G 71 -6.8 -4.16351 | overlap 2045877 ATAGGCCAAAAAACA GTGATAAC ACC ATTATCAC GCGAACCAACCGTAC TERM 2289 2045964 - 2045984 + g 83 -5.3 -5.1675 | overlap 2045972 CCCTTTGATCATGCC CTCTTCCGG TAC CCGGTACAG TTTTTTACTGCCTAA pspB 2046238 - 2046011 - | phage shock protein B YPN_1812 2047065 - 2046400 - | phage shock protein PspA pspF 2047310 - 2048338 + | phage shock protein operon transcriptional activator TERM 2290 2048429 - 2048397 - T 76 -7.7 -4.20696 | opp_overlap 2048404, overlap 2048385 2048401 2048403 2048404 GGACGAAGGGTAAAA TAAATATCCTCCGAC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2291 2048425 - 2048401 - T 77 -6.3 -4.68655 | opp_overlap 2048404, overlap 2048385 2048397 2048403 2048404 GAAGGGTAAAATAAA TATCCTCCGAC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2292 2048423 - 2048403 - T 80 -8.9 -3.94471 | opp_overlap 2048404, overlap 2048385 2048401 2048397 2048404 AGGGTAAAATAAATA TCCTCCGAC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2293 2048422 - 2048404 - T 93 -12.4 -2.95598 | opp_overlap 2048404, overlap 2048385 2048403 2048401 2048397 GGGTAAAATAAATAT CCTCCGAC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2294 2048404 - 2048422 + T 100 -10.2 -4.8048 | opp_overlap 2048385 2048404 2048403 2048401 2048397 GGGTAAAATAAATAT CCTCCGAC ATA GCCGGAGG TTTTTCATATGCGCC YPN_1814 2048961 - 2048503 - | transposase for the IS1541 insertion element TERM 2295 2049074 - 2049092 + H 100 -16 -4.36914 | opp_overlap 2049074 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2296 2049092 - 2049074 - H 100 -16 -3.07307 | opp_overlap 2049074 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2297 2049128 - 2049111 - H 100 -8.4 -5.24129 | TCTGGGCACAAAAAA GCCAGC ACCCGA GCTGGC TTAAAATACTGGAAG TERM 2298 2049229 - 2049215 - H 70 -5.8 -4.28361 | TGAATCGCATCAAAA TGATAA TAC TTATCA ATATCAATTGTAAAT YPN_1815 2049619 - 2051265 + | peptide transport periplasmic protein precursor YPN_1816 2051262 - 2052227 + | peptide transport system permease protein YPN_1817 2052214 - 2053104 + | peptide transport system permease protein TERM 2299 2053473 - 2053486 + G 79 -8.1 -4.42238 | opp_overlap 2053471 TGGACATATAAAGGC CGCTG GTGG CAGCG TTTTCATTGGCGTAA YPN_1818 2053104 - 2054096 + | peptide transport system ATP-binding protein YPN_1819 2054096 - 2054911 + | peptide transport system ATP-binding protein TERM 2300 2054952 - 2054971 + F 100 -12.2 -3.96534 | overlap 2054964 CGGTGGTTAACCTCC CCGCTATC TTTT GATAGCGG TTATCTTCTTTTAAC YPN_1820 2055301 - 2056581 + | hypothetical protein tppB 2057224 - 2058729 + | putative tripeptide transporter permease TERM 2301 2058759 - 2058740 - f 81 -9.2 -3.77607 | opp_overlap 2058741, overlap 2058741 AATAAGCTGACTAAA CGCGCTCC TGCG GGAGCGCT TTTAGTGCTAGTTAG TERM 2302 2058741 - 2058758 + F 100 -12.7 -4.33105 | opp_overlap 2058741 2058740 ATAAGCTGACTAAAC GCGCTCC TGCG GGAGCGC TTTTAGTGCTAGTTA TERM 2303 2058758 - 2058741 - f 89 -12.7 -2.85841 | opp_overlap 2058741, overlap 2058740 ATAAGCTGACTAAAC GCGCTCC TGCG GGAGCGC TTTTAGTGCTAGTTA YPN_1822 2058984 - 2059574 + | hypothetical protein TERM 2304 2059708 - 2059720 + F 74 -4.8 -4.84492 | TCCATCAGCATTGGA GCCT CTAAC AGGC TTTTATTGTCATTAA YPN_1823 2059820 - 2060083 + | hypothetical protein TERM 2305 2060218 - 2060189 - f 72 -9.3 -3.16553 | opp_overlap 2060182, overlap 2060187 ACAACTATCAATACA CTACAGCGGGG GAAATCAT CACCGCTGTAG GACTTGTATTGCCCC YPN_1824 2060328 - 2060933 + | glutathionine S-transferase TERM 2306 2060981 - 2060951 - T 100 -15.6 -3.51694 | opp_overlap 2060948, overlap 2060947 AATAATGAGAATCAA TCAATTGCCCCC ATCACTA GGGGGCAATTGA AAATGGTTAGATTAC YPN_1825 2061853 - 2060993 - | pyridoxamine kinase TERM 2307 2061994 - 2061973 - R 87 -5.1 -5.52384 | opp_overlap 2061976, overlap 2061976 GTCTCAGCAAAAAAA TAAGGGACA TTTC TGCCCCTTC TCTTATTTTACGCTT TERM 2308 2061991 - 2061976 - R 82 -6.8 -4.8487 | opp_overlap 2061976, overlap 2061973 TCAGCAAAAAAATAA GGGACA TTTC TGCCCC TTCTCTTATTTTACG YPN_1826 2063282 - 2062008 - | tyrosyl-tRNA synthetase TERM 2309 2062392 - 2062407 + g 74 -2.5 -5.21506 | overlap 2062387 AACATATTGCGCGCG CGGTG CTTTAC CACTG TTTTTATCTTCTTCT TERM 2310 2062563 - 2062577 + g 70 -8.6 -3.74693 | CCAGACTGCACCCCC TTCGGT TTT ACCGAA TTTAGTGCCATCGGC YPN_1827 2064117 - 2063464 - | pyridoxamine 5'-phosphate oxidase YPN_1828 2064525 - 2064208 - | lipoprotein anmK 2065692 - 2064580 - | anhydro-N-acetylmuramic acid kinase TERM 2311 2065264 - 2065244 - G 70 -8.1 -3.69094 | AACGCATGATGGAAA GCGGGCACC AAG GGGGCCCCC TGCCCGCCATAGGCC YPN_1830 2066248 - 2066715 + | lipoprotein TERM 2312 2066767 - 2066797 + T 100 -14.1 -5.34555 | opp_overlap 2066771, overlap 2066771 TAAATCAGAACAGTA AAAACCGGGGTTC ATTGC GAACCCCGGTTTG TTTTTTGTACTGTGG TERM 2313 2066771 - 2066793 + T 100 -14.9 -5.1471 | opp_overlap 2066771, overlap 2066767 TCAGAACAGTAAAAA CCGGGGTTC ATTGC GAACCCCGG TTTGTTTTTTGTACT TERM 2314 2066793 - 2066771 - T 100 -15.6 -4.90906 | opp_overlap 2066767 2066771 TCAGAACAGTAAAAA CCGGGGTTCA TTG CGAACCCCGG TTTGTTTTTTGTACT YPN_1831 2067290 - 2066859 - | transcriptional regulator SlyA TERM 2315 2067452 - 2067432 - H 81 -5.5 -5.24531 | opp_overlap 2067435, overlap 2067435 ATTCTTTAGAAAAAA TGATGTATC AAC GATACATTA CCTCTTAAGGATTAA TERM 2316 2067922 - 2067933 + H 81 -4.4 -5.40072 | opp_overlap 2067922 GATCCGATTCGACAA TAGC GACA GCTA TTTTTTTGCAGCAAC YPN_1832 2067959 - 2069434 + | putative cell division protein TERM 2317 2069594 - 2069613 + F 100 -5.7 -5.80364 | AGACCATAGCCTTGA TGCCAGC GCCTTG GTTGGCA TTTTTTTCTTGACCT YPN_1833 2069657 - 2070256 + | TetR family transcriptional regulator YPN_1834 2070344 - 2071441 + | N-ethylmaleimide reductase YPN_1835 2074616 - 2071662 - | insecticial toxin TERM 2318 2075202 - 2075220 + G 70 -4.6 -4.64676 | CTGGCCCGGTAAAAG GCGGTAAT ACC ATTATTGC TTTTGTTGAAGATCC YPN_1836 2074889 - 2075296 + | lactoylglutathione lyase TERM 2319 2075307 - 2075324 + F 87 -8.4 -4.48987 | opp_overlap 2075306 ACTGATTAACTTAAG GGCACC TCGGAC GGTGCC TTTTACTTATCACAA YPN_1837 2075375 - 2076055 + | ribonuclease T TERM 2320 2076095 - 2076078 - T 100 -8.4 -5.26875 | CTTGTAATTAAAAAA GGTGGC CATTAC GCCACC TGAGGTTATTGACAA TERM 2321 2076173 - 2076199 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 2076162, overlap 2076168 2076172 ACATCCATGTAGGCT CGAACCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2322 2076263 - 2076280 + T 79 -8.4 -4.15703 | TTGTCAGCAGTCTGA GGTGGC CATTAC GCCACC TTCTTATTTATCACA YPN_1838 2076714 - 2076364 - | hypothetical protein TERM 2323 2077040 - 2077018 - H 88 -7 -5.1287 | opp_overlap 2077018 2077024, overlap 2077021 CTCAGAGTGAAAAAA CAACAATGGC AAC GCCATTAATG TTTTCTCACAATATC TERM 2324 2077037 - 2077021 - H 81 -7.3 -4.65666 | opp_overlap 2077018 2077024, overlap 2077018 AGAGTGAAAAAACAA CAATGGC AAC GCCATTA ATGTTTTCTCACAAT TERM 2325 2077445 - 2077429 - g 70 -2.9 -4.87892 | overlap 2077432 TCGCAATAAAATAAA CAGCAGT CGG ACAACTG AAAGTAAAACTGCAG YPN_1839 2077154 - 2078005 + | hypothetical protein TERM 2326 2078558 - 2078570 + G 73 -10.5 -3.31162 | opp_overlap 2078558, overlap 2078556 2078554 AAGAGATCGTGAAAA CCGCC AAT GGCGG TGTGTTTAATAATGC TERM 2327 2078570 - 2078558 - g 88 -10.5 -4.1413 | opp_overlap 2078556 2078554 2078558 AAGAGATCGTGAAAA CCGCC AAT GGCGG TGTGTTTAATAATGC YPN_1840 2078383 - 2078961 + | superoxide dismutase TERM 2328 2079014 - 2079036 + F 100 -16.4 -3.68222 | opp_overlap 2079014, overlap 2079017 CATCGATAACATAAA TAAGGGCGGT TTA ACCGCCCTTA TTATTACCATTCACC TERM 2329 2079036 - 2079014 - f 100 -16.4 -4.28188 | opp_overlap 2079014 2079017 CATCGATAACATAAA TAAGGGCGGT TTA ACCGCCCTTA TTATTACCATTCACC TERM 2330 2079017 - 2079033 + F 100 -13.7 -3.97139 | opp_overlap 2079014, overlap 2079014 CGATAACATAAATAA GGGCGGT TTA ACCGCCC TTATTATTACCATTC TERM 2331 2080216 - 2080199 - g 86 -6.9 -4.9725 | opp_overlap 2080199 2080201, overlap 2080202 ATTCTGACACAAAAA CATCGCC CAAC GGCGGTG TTCTGTGGCGGCGAT YPN_1841 2079488 - 2080513 + | DNA-binding transcriptional repressor PurR TERM 2332 2080560 - 2080580 + T 84 -9.8 -3.85092 | opp_overlap 2080563, overlap 2080554 2080563 CCGGCCCGATTCGGA TAACCGCA TTCCC TGCGGTTA TTTGCTATCGATGGT TERM 2333 2080563 - 2080577 + T 72 -7.1 -4.05208 | opp_overlap 2080563, overlap 2080554 2080560 GCCCGATTCGGATAA CCGCA TTCCC TGCGG TTATTTGCTATCGAT YPN_1842 2081534 - 2080602 - | putative DNA-binding transcriptional regulator TERM 2334 2081085 - 2081065 - G 74 -4.5 -4.82128 | overlap 2081066 TCACGAAAGACAAAA CGCCCACCC ACT GGGATGGCA CGGGTCGCCCCTATG YPN_1843 2081824 - 2083026 + | inner membrane transport protein YdhC YPN_1844 2083506 - 2084657 + | cyclopropane fatty acyl phospholipid synthase TERM 2335 2084667 - 2084696 + T 86 -5.7 -5.3236 | opp_overlap 2084667 2084670 2084672 2084674, overlap 2084670 CGCTAACCTCAGATA GGAGACAGGGG GATAAAAA CCCCTGTCTTA TTTTTTGTAGGTTAT TERM 2336 2084670 - 2084693 + T 100 -9.6 -4.73105 | opp_overlap 2084670 2084667 2084672 2084674, overlap 2084667 TAACCTCAGATAGGA GACAGGGG GATAAAAA CCCCTGTC TTATTTTTTGTAGGT YPN_1845 2085364 - 2084708 - | riboflavin synthase subunit alpha YPN_1846 2085613 - 2086986 + | multidrug efflux protein TERM 2337 2087075 - 2087065 - f 82 -6.8 -4.87803 | overlap 2087066 TAGTCTCAAATAAAA GGGA GTC TCCC CAACAACATCTGGAT TERM 2338 2089131 - 2089121 - g 70 -3.2 -4.89393 | GAAACCGCAGAAAAA CTGG AAG CCAA AGTGATTGTGGTCGC YPN_1847 2088017 - 2089429 + | pyruvate kinase TERM 2339 2089455 - 2089484 + F 100 -10.8 -5.055 | opp_overlap 2089455 2089460, overlap 2089460 TTATTGTTCAATAAT TAAAACGCCGCT CTCTAT AGCGGCGTTTTC TTTTTTAAAGCTTGC TERM 2340 2089484 - 2089455 - f 77 -10.8 -2.77344 | opp_overlap 2089455 2089460, overlap 2089460 TTATTGTTCAATAAT TAAAACGCCGCT CTCTAT AGCGGCGTTTTC TTTTTTAAAGCTTGC TERM 2341 2089460 - 2089479 + F 100 -10.7 -5.42198 | opp_overlap 2089455 2089460, overlap 2089455 GTTCAATAATTAAAA CGCCGCT CTCTAT AGCGGCG TTTTCTTTTTTAAAG TERM 2342 2089479 - 2089460 - f 100 -10.7 -4.56133 | opp_overlap 2089460 2089455, overlap 2089455 GTTCAATAATTAAAA CGCCGCT CTCTAT AGCGGCG TTTTCTTTTTTAAAG YPN_1848 2089741 - 2089986 + | hypothetical protein TERM 2343 2090008 - 2090026 + F 100 -14.6 -5.60993 | opp_overlap 2090008 TTCCTGAATGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTGCCCAG TERM 2344 2090026 - 2090008 - f 100 -14.6 -4.8622 | opp_overlap 2090008 TTCCTGAATGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGTGCCCAG TERM 2345 2090064 - 2090046 - f 100 -16 -4.36914 | opp_overlap 2090046 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2346 2090046 - 2090064 + F 100 -16 -3.07307 | opp_overlap 2090046 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_1849 2090177 - 2090608 + | transposase TERM 2347 2090613 - 2090631 + F 100 -13.2 -4.01078 | CCAGGGGGTAGTCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_1850 2090635 - 2091657 + | transposase for insertion sequence IS100 TERM 2348 2091738 - 2091724 - g 77 -11.4 -3.3506 | overlap 2091715 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_1851 2091657 - 2092436 + | transposase/IS protein YPN_1852 2092452 - 2092595 + | hypothetical protein TERM 2349 2092673 - 2092697 + T 100 -9.9 -4.44046 | opp_overlap 2092676, overlap 2092675 2092676 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGCCCTACG TERM 2350 2092675 - 2092695 + T 100 -12.5 -3.82628 | opp_overlap 2092676, overlap 2092673 2092676 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGCCCTA TERM 2351 2092694 - 2092676 - T 100 -16 -4.8048 | opp_overlap 2092675 2092673 2092676 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCCT TERM 2352 2092676 - 2092694 + T 100 -16 -2.88854 | opp_overlap 2092676, overlap 2092675 2092673 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCCT TERM 2353 2093011 - 2092967 - T 90 -11.6 -3.66556 | gap 1, opp_overlap 2092959 2092954, overlap 2092968 AAGCGCGGAATACAA TTCTG-GCTTTACCACGATGG ATCT CCACCACGGTAAAGCACAGAC AAGTGATTAGTTATT TERM 2354 2093010 - 2092968 - T 100 -15.1 -2.79452 | gap 1, opp_overlap 2092959 2092954, overlap 2092967 AGCGCGGAATACAAT TCTG-GCTTTACCACGATGG ATCT CCACCACGGTAAAGCACAGA CAAGTGATTAGTTAT YPN_1853 2094082 - 2093018 - | hypothetical protein YPN_1854 2094775 - 2094353 - | cysteine desufuration protein SufE TERM 2355 2094831 - 2094807 - R 91 -6.4 -5.43553 | opp_overlap 2094807 ACGTAAAAAATAAAA GCCGACTGCT GAAAG AATAGTCGGC TTTGGTGTTGCCTGT YPN_1855 2096084 - 2094864 - | selenocysteine lyase TERM 2356 2095863 - 2095852 - G 70 -4.4 -4.63218 | GCGGCGTGAATAAAA TCAG CCAC CTGA GTGCGTACGGCTTCC YPN_1856 2097406 - 2096081 - | cysteine desulfurase activator complex subunit SufD sufC 2098127 - 2097381 - | cysteine desulfurase ATPase component YPN_1858 2099824 - 2098313 - | cysteine desulfurase activator complex subunit SufB TERM 2357 2098469 - 2098482 + g 79 -5.3 -4.90906 | opp_overlap 2098469, overlap 2098477 CAAGCAATAGAACAG TTGGT CATC ACCAA TTTTTGATGTTGTGG TERM 2358 2099030 - 2099044 + g 74 -11.4 -3.1355 | ATAGCTGTCGCGCAC GGGTGC CGA GCACCC TTCGATATAGCTGAC sufA 2100210 - 2099839 - | iron-sulfur cluster assembly scaffold protein TERM 2359 2100065 - 2100053 - G 74 -6.9 -4.28977 | opp_overlap 2100052 ATAACATAGGCAAAA CCGGC ACA ACCGG ACTGTTTGACGCCGA TERM 2360 2100815 - 2100797 - R 78 -5.3 -5.03314 | gap 1 GCTATTGGCAAAAAA TGACGACG TTAG CG-CGTCA ATACGGCGATCGTTA YPN_1860 2101221 - 2100805 - | hypothetical protein YPN_1861 2104399 - 2101343 - | hypothetical protein TERM 2361 2104315 - 2104325 + g 74 -6.8 -4.4078 | opp_overlap 2104324 TAGTAGCAGTATCGC CGGT AAA ACCG TTTTGCTTCAAAGCG TERM 2362 2104365 - 2104350 - G 74 -4 -5.03747 | overlap 2104352 AAAGCGTCCAAAAAA TCCAGT ACCG ACTGAA TGACACCCGGTGCCT YPN_1862 2105020 - 2106123 + | putative inner membrane protein TERM 2363 2106297 - 2106307 + T 80 -2.6 -5.4505 | ATCTCATTCTACTTC TTAT TTA ATAA TTTTTTATTCAGAGG TERM 2364 2106466 - 2106485 + T 100 -9.3 -6.21477 | CTGTGTGTAGTCTTT GCCTGTC ACCTAA GACAGGC TTTTTTTTTGCTATT TERM 2365 2106639 - 2106620 - T 100 -10 -5.47399 | overlap 2106609 TTAATTGCAAAAAAA TCCGCAAC CTAA GCTGCGGA TGATGAATACCTATA YPN_1863 2109106 - 2106722 - | phosphoenolpyruvate synthase YPN_1864 2109443 - 2110264 + | hypothetical protein TERM 2366 2110536 - 2110522 - g 74 -10 -3.50393 | GGTTATTGCAGATAA CGTGAC GGC GTCACG TAAACGAATAGAGAA YPN_1865 2110421 - 2111467 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2367 2111517 - 2111565 + T 95 -7.8 -5.00616 | gap 1, opp_overlap 2111532, overlap 2111519 2111560 ATTAAATGAATACCT TCGGGATAGGGAAAAGTTAAC GTTGTCGG GTTAACTTTT-TCTATCCCTA TTTTTTCCGAAAAAA TERM 2368 2111519 - 2111563 + T 91 -10.4 -4.13561 | gap 1, opp_overlap 2111532, overlap 2111517 2111560 TAAATGAATACCTTC GGGATAGGGAAAAGTTAAC GTTGTCGG GTTAACTTTT-TCTATCCC TATTTTTTCCGAAAA YPN_1866 2112355 - 2111636 - | hypothetical protein YPN_1867 2113099 - 2112377 - | hypothetical protein lplA 2114167 - 2113151 - | lipoate-protein ligase A YPN_1869 2114756 - 2114292 - | lipoprotein YPN_1870 2115422 - 2115036 - | hypothetical protein YPN_1871 2115763 - 2115419 - | hypothetical protein TERM 2369 2115569 - 2115542 - G 87 -9.9 -4.32571 | CAACACAAAATTAAA GCTGAGCATAG GATAGG CCACGCTCAGC GGGAGTTGCTGCAAT TERM 2370 2115690 - 2115642 - G 82 -13.1 -3.34895 | opp_overlap 2115659 GCTATCGCCAACCAA CGCAATGTCAGATTCAACCGCCG GGC CTGCGGTTGCTCCCAACACTGCG CAGCCTGTTTTTGAC arnT 2117424 - 2115760 - | 4-amino-4-deoxy-L-arabinose transferase TERM 2371 2117225 - 2117235 + g 86 -8.2 -4.59773 | opp_overlap 2117224 2117222 2117225 TTATTAAACCAATAC CCGG CGA CCGG TTTTTCAAAATAACG YPN_1873 2118326 - 2117421 - | hypothetical protein TERM 2372 2118190 - 2118173 - G 79 -6.9 -4.7254 | opp_overlap 2118172, overlap 2118175 AGCGCGGACGAAAAA GGCGCCA TAAA TGGCGTC CCATATTATCCGGCC YPN_1874 2120326 - 2118323 - | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase TERM 2373 2120217 - 2120207 - G 91 -6.8 -5.10767 | overlap 2120199 GACCGAAGAGAAAAA GCGA TTC TCGC CAGGATTATCAGTAT YPN_1875 2121306 - 2120323 - | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase TERM 2374 2121064 - 2121046 - G 82 -11 -3.76492 | opp_overlap 2121046 GCTAACCTGATTAAA TCCCGCCA TAA TGGCGGAA TGTTGACCATAATTA YPN_1876 2122447 - 2121293 - | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YPN_1877 2123555 - 2122797 - | vitamin B12-transporter ATPase YPN_1878 2124134 - 2123580 - | putative glutathione peroxidase YPN_1879 2125226 - 2124204 - | vtamin B12-transporter permease TERM 2375 2125421 - 2125377 - R 75 -8.7 -3.63515 | opp_overlap 2125377 2125375 CTTTATTGCTAATAA GTCGCTAACTCTGCTTGGTCA TAG CAAACAAGTAAAGTTAGCAAC TGTTTGTTATGCTCG YPN_1880 2125857 - 2125438 - | hypothetical protein TERM 2376 2126196 - 2126211 + r 100 -11.8 -4.52589 | opp_overlap 2126196 TCTTGAAAAGAAAAA GGCCGC TTGC GCGGCC TTTTATGTCGGAAAC TERM 2377 2126211 - 2126196 - R 100 -11.8 -5.45802 | opp_overlap 2126196 TCTTGAAAAGAAAAA GGCCGC TTGC GCGGCC TTTTATGTCGGAAAC ihfA 2126526 - 2126230 - | integration host factor subunit alpha pheT 2128918 - 2126531 - | phenylalanyl-tRNA synthetase subunit beta pheS 2129915 - 2128932 - | phenylalanyl-tRNA synthetase subunit alpha TERM 2378 2129057 - 2129041 - G 79 -8 -4.29176 | ATACCGAATGCAAAA CCTGAG TAAAT CTCAGG ATCGATACCGACATT TERM 2379 2129799 - 2129810 + g 78 -3.6 -5.09895 | overlap 2129788 CGATGTCATTTGAAG GGTC AAGT GGCC TTTTTTACCTAGATA TERM 2380 2130224 - 2130207 - g 100 -8.4 -6.04324 | GTAAAAAACAAAAAA GCCTCC ACGATG GGAGGC TTCGGCGCTATTTTT YPN_1884 2130108 - 2130287 + | hypothetical protein TERM 2381 2130401 - 2130383 - T 100 -10.3 -4.49756 | opp_overlap 2130378 2130383 GTGCAAAGATTAAAA GAGGGAG ACAAG CTCCCTC TTCAATTCTGACTTA TERM 2382 2130383 - 2130401 + T 78 -10.3 -3.2496 | opp_overlap 2130383, overlap 2130378 GTGCAAAGATTAAAA GAGGGAG ACAAG CTCCCTC TTCAATTCTGACTTA rplT 2130770 - 2130414 - | 50S ribosomal protein L20 rpmI 2131005 - 2130808 - | 50S ribosomal protein L35 YPN_1887 2131452 - 2131102 - | translation initiation factor IF-3 YPN_1888 2133585 - 2131657 - | threonyl-tRNA synthetase TERM 2383 2131890 - 2131902 + g 80 -3.3 -5.32565 | CTTTTGCTCTAATAC CCGCA TCT TGCAG TTTTTTGGTTACTTG TERM 2384 2134118 - 2134136 + G 86 -3 -5.56568 | overlap 2134120 ATCAAAACTTTATGT CTGCCGTT TCG AAAGGCCG TTTTTTTGATGGTGT YPN_1889 2133976 - 2134188 + | hypothetical protein TERM 2385 2134827 - 2134854 + T 100 -13.5 -5.19275 | TGGTTACTGGAACGT CGCCCTGATTG TTTATT CAATCGGGGCG TTTTATTTTCTGGCT YPN_1890 2135279 - 2134947 - | hypothetical protein YPN_1891 2135517 - 2136200 + | multiple drug resistance protein MarC YPN_1892 2136984 - 2136322 - | membrane-bound lytic murein transglycosylase TERM 2386 2136873 - 2136884 + g 85 -3.6 -5.40072 | CTACGTTAAGAGAAT TGCC CTGT GGCG TTTTTTTCAGCCACC TERM 2387 2136967 - 2136954 - G 82 -6.7 -4.89477 | CCGCCAACAATAAAA TTGCC ATTA GGCAA CCGACTTTTGAATTC YPN_1893 2137196 - 2138164 + | periplasmic-binding protein YPN_1894 2138161 - 2139051 + | ATP-binding transport protein YPN_1895 2139051 - 2139935 + | chelated iron transport system membrane protein TERM 2388 2140096 - 2140113 + G 73 -5.5 -4.67755 | TTCTCATGCTGTGCT GCCAGGG ATTG TTCTGGC TTTTTGGCTCGGTAT YPN_1896 2139932 - 2140825 + | chelated iron transport system membrane protein YPN_1897 2140893 - 2141105 + | membrane protein YPN_1898 2141130 - 2142005 + | hypothetical protein YPN_1899 2142688 - 2142134 - | yfeABCD locus regulator TERM 2389 2142752 - 2142766 + H 76 -10 -3.36195 | overlap 2142741 2142751 2142749 ACATCCACACGTTGT GCGGTA CTT TACCGC TATGTTTGCTATTTA YPN_1900 2143099 - 2143764 + | 2-deoxyglucose-6-phosphatase TERM 2390 2143887 - 2143874 - T 71 -2.3 -5.14563 | overlap 2143855 2143854 2143875 CTTTTTAGTAAAAAA GTCGC TATA GCGAT ACGGAGTGGAAAGGA TERM 2391 2143957 - 2143928 - T 93 -10.7 -4.16842 | gap 1, opp_overlap 2143927 2143924, overlap 2143929 GTCAGCGGTAATAAA GGGCGGCCAGAGTC AGT GACTC-AGCCGCCG AATATATTTTAGAGA TERM 2392 2143956 - 2143929 - T 100 -14.2 -3.09784 | gap 1, opp_overlap 2143927 2143924, overlap 2143928 TCAGCGGTAATAAAG GGCGGCCAGAGTC AGT GACTC-AGCCGCC GAATATATTTTAGAG TERM 2393 2144041 - 2144020 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_1901 2145223 - 2144015 - | transposase TERM 2394 2146317 - 2146338 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_1902 2145441 - 2146343 + | transposase YPN_1903 2146546 - 2146355 - | transposase YPN_1904 2146944 - 2146594 - | hypothetical protein YPN_1905 2147280 - 2148116 + | 5-keto-4-deoxyuronate isomerase TERM 2395 2148148 - 2148132 - f 70 -7.2 -3.77196 | opp_overlap 2148132 GTATCACCTATTAAA GCCACC TTTAC GGCGGC TTTCACCTCCAATAA TERM 2396 2148361 - 2148381 + G 70 -4.6 -4.59773 | opp_overlap 2148358 2148361 GAGACTATCGAACAA GTGACTGC ACTGG GCCGTCGC TTTTTCAGCCTGACC YPN_1906 2148163 - 2148969 + | 2-deoxy-D-gluconate 3-dehydrogenase TERM 2397 2149057 - 2149076 + F 100 -12.2 -5.74288 | opp_overlap 2149054 CTCAAAAACGCATCA GGCACAAC TTTG GTTGTGCC TTTTTTATTATTTAT TERM 2398 2149171 - 2149155 - f 91 -3.7 -5.83211 | CACCAAAATAAAAAA TCAAAAC AAC GTTCCGA CTTCGATCACACTTT YPN_1907 2149305 - 2150972 + | exopolygalacturonate lyase YPN_1908 2151013 - 2151903 + | ABC sugar transporter (permease) YPN_1909 2151896 - 2152816 + | sugar ABC transporter (permease) YPN_1910 2152830 - 2153957 + | sugar ABC transporter TERM 2399 2154512 - 2154501 - g 84 -4.4 -5.30616 | opp_overlap 2154501 2154503 GTATTTAAAGAAAAA TTGG GTGA CCAA TATTACCCTGTTGTA YPN_1911 2153973 - 2155265 + | sugar-binding protein TERM 2400 2155329 - 2155292 - f 71 -10 -2.57192 | opp_overlap 2155292 2155297, overlap 2155297 ATTTAACTTAAGTCA CAAAATAACCCTGCCA TTTATT TGGTGGGGTTATTTTG TTTAATCAAATAAAA TERM 2401 2155292 - 2155329 + F 100 -14.4 -3.74693 | opp_overlap 2155292 2155297, overlap 2155297 ATTTAACTTAAGTCA CAAAATAACCCTGCCA TTTATT TGGTGGGGTTATTTTG TTTAATCAAATAAAA TERM 2402 2155297 - 2155324 + F 100 -8.5 -4.93877 | opp_overlap 2155292 2155297, overlap 2155292 ACTTAAGTCACAAAA TAACCCTGCCA TTTATT TGGTGGGGTTA TTTTGTTTAATCAAA YPN_1912 2155563 - 2156273 + | hypothetical protein TERM 2403 2156341 - 2156370 + F 100 -13.1 -5.53288 | gap 1, opp_overlap 2156348 2156349 CTCTGCATTATTTTG GGGAAAAGTTGACT CCC AGTCA-CTTTTCCC TTTTTTTAGCTTAGC TERM 2404 2157111 - 2157150 + G 82 -11.2 -3.76641 | opp_overlap 2157108 TGGCCGATATGATTA CGCCAGCCGGTGTGCCGC TATT GTGGCCCTGCCGCTGGCG TTTCAGTATTCCGCT YPN_1913 2156753 - 2157301 + | hypothetical protein YPN_1914 2157505 - 2158896 + | transport protein YPN_1915 2159962 - 2159111 - | N-acetylmuramoyl-L-alanine amidase TERM 2405 2160242 - 2160262 + r 82 -6.8 -4.82901 | opp_overlap 2160242 TCATGTGATGAAAAA CAGCCCCT GCCAG AGGAGCTG TTTTTATAAAAAGAG TERM 2406 2160262 - 2160242 - R 100 -9 -4.7373 | opp_overlap 2160242 TCATGTGATGAAAAA CAGCCCCT GCCAG AGGAGCTG TTTTTATAAAAAGAG YPN_1916 2161156 - 2160365 - | IclR family transcriptional regulator TERM 2407 2161330 - 2161304 - R 100 -12.4 -3.88498 | CTTGCAGACAGCAAA TTAGCCTCTTTC TAA GAGAGAGGCTAA TGGAAAACTCGGCTA YPN_1917 2162509 - 2161343 - | oligogalacturonate lyase TERM 2408 2163252 - 2163277 + G 84 -11.3 -3.81691 | overlap 2163235 TCGAGCCCAACTTGG TCGAGGTATTG GTAT CAATACCTTGA TTGTTGCTGTGTCTT YPN_1918 2162836 - 2164203 + | transport protein YPN_1919 2165060 - 2164257 - | chaperone protein YPN_1920 2166220 - 2165057 - | fimbrial protein YPN_1921 2168829 - 2166217 - | outer membrane usher protein TERM 2409 2166533 - 2166543 + g 73 -5.4 -4.68994 | opp_overlap 2166524, overlap 2166529 GCAACAGCACCTGCG GTTG GCG CAAC TTTTTGGCTAGTACT TERM 2410 2168862 - 2168913 + r 74 -10 -3.14261 | opp_overlap 2168862 2168877, overlap 2168877 ATTAAATGCAGTATA TAAAAGTGCAAAAAATACAAATTA CCCT TAATTTGTATTTTTTATAGTTTTA TTGGGTCAGTTTTTG TERM 2411 2168913 - 2168862 - R 72 -10 -2.84999 | opp_overlap 2168862 2168877, overlap 2168877 ATTAAATGCAGTATA TAAAAGTGCAAAAAATACAAATTA CCCT TAATTTGTATTTTTTATAGTTTTA TTGGGTCAGTTTTTG TERM 2412 2168877 - 2168898 + r 95 -7.5 -5.4588 | opp_overlap 2168877 2168862, overlap 2168862 TAAAAGTGCAAAAAA TACAAATTA CCCT TAATTTGTA TTTTTTATAGTTTTA TERM 2413 2168898 - 2168877 - R 90 -7.5 -5.15117 | opp_overlap 2168862 2168877, overlap 2168862 TAAAAGTGCAAAAAA TACAAATTA CCCT TAATTTGTA TTTTTTATAGTTTTA YPN_1922 2169690 - 2168911 - | chaperone protein TERM 2414 2169722 - 2169740 + r 100 -10.3 -4.386 | opp_overlap 2169721 2169720 TCGAACTTATAAAGC TGGGAGC ACTAA GCTCCCA TTTTATGCCGGATTG YPN_1923 2170385 - 2169843 - | fimbrial protein TERM 2415 2170776 - 2170761 - R 100 -4.8 -5.9362 | GAAAAGACAAAAAAA TTCATT TTTC AATGAA GTAAGTCACAGATTT TERM 2416 2170965 - 2170937 - R 100 -13.2 -5.44119 | GCCACGGTAAAAAAA CACCCTGTCAGC TTACC GCTCACAGGGTG TGAAGACCATATTAT YPN_1924 2171924 - 2171043 - | heat shock protein HtpX TERM 2417 2172376 - 2172355 - R 100 -8.7 -6.31682 | opp_overlap 2172355 AAAAGCAAAAAAAAA TCCGAGTCC AATA AGACCCGGA TTCTTCATATTATTT YPN_1925 2174470 - 2172398 - | carboxy-terminal protease YPN_1926 2175203 - 2174490 - | putative solute/DNA competence effector TERM 2418 2174747 - 2174774 + g 76 -2.7 -5.08824 | overlap 2174747 TGCGGTTTTCCGGAG CC-GCACCCGCTT CACG ACGCGG-TGCAGG TTTTTTACCTGCCGG TERM 2419 2175025 - 2175046 + g 73 -10.9 -3.29147 | GTGTAGAGACGCAGC GCAGAACGC AATT GCGTTTTGC TTAAATTCTCTTCCC TERM 2420 2175147 - 2175137 - G 79 -8.2 -4.41348 | CGGCGGTGAAACAAA GCGG GAA CCGC TCGGCCAAAAAGGCT TERM 2421 2175271 - 2175252 - R 86 -12.2 -3.1552 | overlap 2175250 GCGCAGGCATGAACA GGCGTCAT TATA ATGACGCC ATCAGCAATTGCCAC YPN_1927 2175796 - 2175299 - | hypothetical protein TERM 2422 2175536 - 2175548 + g 73 -6.2 -4.4891 | ATGCACATTACCTAC CCGC TGAAC GCGG TTTTCTGCTACTGCG TERM 2423 2175887 - 2175868 - H 90 -10.8 -3.91642 | opp_overlap 2175868, overlap 2175824 AAAATAATCATTAAA TACCCTTG GCGA CAAGGGTA TTCCTCTGTAATGTT TERM 2424 2175868 - 2175887 + H 81 -10.8 -3.34936 | opp_overlap 2175824 2175868 AAAATAATCATTAAA TACCCTTG GCGA CAAGGGTA TTCCTCTGTAATGTT TERM 2425 2176201 - 2176216 + GH 71 -9 -3.39449 | GACCCGGTTGACCGC CATGGC TTGC GCCATG TTGCTGTTAATACCG YPN_1928 2175923 - 2177275 + | hypothetical protein TERM 2426 2177723 - 2177704 - gf 72 -10 -2.76671 | opp_overlap 2177704, overlap 2177703 ATACTCAGCCTAAAT TCCGCCTG AATA CAGGCGAA TTAATGATTCATCTC TERM 2427 2179155 - 2179141 - gf 77 -8.5 -3.98282 | overlap 2179111 TGTATAGTAATGAAA CGGCC GCACG GGCCG TGGGTAGCCAGATTA YPN_1929 2177244 - 2179895 + | hypothetical protein TERM 2428 2180602 - 2180618 + G 74 -6.5 -4.29304 | opp_overlap 2180584 2180583, overlap 2180598 GCATTCAGTGGCACA CTGAGCG GGA CTCTCAG TTTGTATTGTAGTGC YPN_1930 2180374 - 2180928 + | hypothetical protein YPN_1931 2180934 - 2181464 + | hypothetical protein YPN_1932 2181485 - 2182042 + | hypothetical protein YPN_1933 2182073 - 2182825 + | chaperone protein YPN_1934 2183013 - 2185460 + | outer membrane usher protein YPN_1935 2185666 - 2186655 + | hypothetical protein YPN_1936 2186863 - 2187102 + | hypothetical protein YPN_1937 2187601 - 2187212 - | hypothetical protein YPN_1938 2187869 - 2187994 + | hypothetical protein TERM 2429 2187986 - 2188004 + F 100 -13.2 -4.01078 | CCAGGGGGTAGTCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_1939 2188008 - 2189030 + | transposase for insertion sequence IS100 TERM 2430 2189111 - 2189097 - g 77 -11.4 -3.3506 | overlap 2189088 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_1940 2189030 - 2189809 + | transposase/IS protein YPN_1941 2190605 - 2190372 - | hypothetical protein TERM 2431 2190492 - 2190518 + g 84 -2.2 -5.60993 | opp_overlap 2190492 CCATTCATCGAAAGA GTGTTCCGAG TAGCTAT CGCTGAACAC TTTTTTTATCGAGGA YPN_1942 2192016 - 2190760 - | lipoprotein TERM 2432 2190880 - 2190894 + g 76 -11.4 -3.19522 | opp_overlap 2190879 2190878 TCCTTCGGCATAACC CGCCTG ATA CAGGCG TTCCATCTTGACTGG TERM 2433 2192269 - 2192243 - R 72 -7.2 -3.9749 | gap 1, overlap 2192244 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCCCCAGGGATG YPN_1943 2192657 - 2192409 - | hypothetical protein YPN_1944 2193818 - 2195047 + | alanine racemase YPN_1945 2196619 - 2195666 - | hypothetical protein TERM 2434 2196681 - 2196652 - R 84 -10.7 -3.61089 | opp_overlap 2196653, overlap 2196653 CCCTAAGAAGTAGAA TCGGGCTGTGCAA AAAA TCGCACAACCCGT TAATGATTATTAAAC TERM 2435 2196653 - 2196680 + r 76 -9.8 -3.33171 | opp_overlap 2196652 2196653 CCTAAGAAGTAGAAT CGGGCTGTGCAA AAAA TCGCACAACCCG TTAATGATTATTAAA TERM 2436 2196680 - 2196653 - R 95 -14.2 -2.76171 | opp_overlap 2196653, overlap 2196652 CCTAAGAAGTAGAAT CGGGCTGTGCAA AAAA TCGCACAACCCG TTAATGATTATTAAA YPN_1946 2197237 - 2196719 - | surface protein YPN_1947 2199351 - 2197057 - | hypothetical protein TERM 2437 2197907 - 2197893 - GR 80 -11.4 -2.64747 | opp_overlap 2197901, overlap 2197892 2197895 TGACCGCATCATAAT CAGCCG AAC CGGCTG CCACACCGGTGATCT TERM 2438 2198384 - 2198370 - GR 80 -11.4 -2.68719 | opp_overlap 2198378, overlap 2198369 2198372 TGACCACATCATAAT CAGCCG AAC CGGCTG CCACACCGGTGATCT TERM 2439 2198750 - 2198773 + gr 72 -9.6 -3.09933 | gap 1 GCAATAGCATCCTGA CCCGCAGGCAC GGA GT-CTTGCGGG TTCACTGAGTTGGCG TERM 2440 2198852 - 2198838 - GR 84 -11.4 -3.1506 | AAAGCTGGCTACCAA CCACCG CAT CGGTGG AGGTCGATGAAATCG TERM 2441 2199054 - 2199040 - GR 72 -7.8 -3.85817 | AGGGGTGGCGATAAA GCTAGG CTT CCCAGC GATCCCACCTTTTCC YPN_1948 2200472 - 2199708 - | N-acetylmuramoyl-L-alanine amidase TERM 2442 2200553 - 2200539 - H 71 -10 -2.63257 | overlap 2200535 ACTGTATATAATCCA GCACAC AAT GTGTGC GCCGCATCAATATTT YPN_1949 2200604 - 2200723 + | hypothetical protein TERM 2443 2201027 - 2200992 - T 74 -4.6 -4.81685 | overlap 2200998 ATGAAGTATGAAAAA TATAAACCGGCAGGGA CAAT TCCCTACCGGTTAGCG CTATCGATAACGTCA TERM 2444 2201021 - 2200998 - T 100 -14.6 -4.58297 | overlap 2200992 TATGAAAAATATAAA CCGGCAGGGA CAAT TCCCTACCGG TTAGCGCTATCGATA YPN_1950 2201687 - 2201043 - | chemotaxis regulator CheZ YPN_1951 2202086 - 2201697 - | chemotaxis regulatory protein CheY YPN_1952 2203236 - 2202187 - | chemotaxis-specific methylesterase TERM 2445 2202474 - 2202453 - G 71 -6.6 -4.25859 | gap 1, overlap 2202467 CCGAACGGAAAAGAA CGTCAACCG AAGGA CGGT-GACG ATTAACCGCGGGTCC YPN_1953 2204123 - 2203236 - | chemotaxis methyltransferase CheR TERM 2446 2203384 - 2203360 - G 73 -6.4 -4.51799 | opp_overlap 2203361, overlap 2203361 AGCAAAGGTACAAAA CGACGCAGAA TGCGT TCCTGCGTCT CTTTATCAAAATAGA TERM 2447 2203383 - 2203361 - G 70 -9.9 -3.29995 | opp_overlap 2203361, overlap 2203360 GCAAAGGTACAAAAC GACGCAGAA TGCGT TCCTGCGTC TCTTTATCAAAATAG TERM 2448 2204194 - 2204226 + r 76 -10.7 -2.60808 | overlap 2204191 CTTTACAGCCACTTG TCGTTACTCGTGATG ACC CGTTACGAGTGATGA TCGATTGTCACTCCT YPN_1954 2205891 - 2204281 - | hypothetical protein YPN_1955 2207748 - 2206075 - | methyl-accepting chemotaxis protein TERM 2449 2206771 - 2206783 + g 71 -6.9 -4.16251 | overlap 2206782 CAATGCTAATTGACT CGCCT GAC GGGCG TTTTCAGCGTTCTGT TERM 2450 2207348 - 2207376 + g 70 -2.5 -5.03145 | opp_overlap 2207357, overlap 2207349 AGTTCGGTTAAGGCA CTAAAATATTCCT CGT AGGACTGTTTTAA TTTTTTGGCGCCTTC TERM 2451 2207725 - 2207707 - G 70 -8.9 -3.51158 | ACCAAATAATACTAA TACCAGC AGCAG GCTGGTA ACCACTTTCATACGC YPN_1956 2208627 - 2207989 - | hypothetical protein TERM 2452 2208167 - 2208177 + g 76 -6.8 -4.55689 | CGGAAGATATCGGCC GGTG TAG CACC TTTTCTGTGAATAGT YPN_1957 2211635 - 2208759 - | integral membrane protein TERM 2453 2209842 - 2209817 - G 73 -5.4 -4.70319 | gap 1 GTACCAAAACTAAAA GCTGACCC-GC GAGCA GCAGGGTTAGC GTAACCTGGCTGAAA YPN_1958 2215969 - 2212163 - | hypothetical protein TERM 2454 2213387 - 2213407 + g 70 -11.1 -2.50816 | overlap 2213386 GTTCACCCGGACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG TERM 2455 2216366 - 2216386 + r 89 -12.7 -2.73875 | overlap 2216364 CATATTAATGTTACT TCGCCATAA AAT TTATGGCGA TACTATTCGGCCAAC YPN_1959 2217109 - 2216444 - | putative DNA-binding protein TERM 2456 2217579 - 2217599 + G 82 -11.9 -3.62597 | opp_overlap 2217566 2217567 AAGCCGTGCAATTTG CATCTGCAC TGG GTGCGGATG TTATTCGAACCTACA YPN_1960 2217299 - 2218285 + | hypothetical protein YPN_1961 2218282 - 2218659 + | YjgF-family lipoprotein TERM 2457 2219114 - 2219124 + G 70 -2.4 -5.05606 | ATGTACTTATCGCTT CTGG TGC CCTG TTTGTTTTTGTTCAG YPN_1962 2218672 - 2219907 + | membrane protein TERM 2458 2219975 - 2219945 - T 81 -9.6 -3.87075 | opp_overlap 2219944 2219943 2219945 2219948, overlap 2219948 ATGACTTGTCATAAA GAACCGCCCGAGCA ATA TGCAATGGCGGTTC AGTTCTTTATTTCAG YPN_1963 2220696 - 2220199 - | purine-binding chemotaxis protein TERM 2459 2220239 - 2220249 + g 79 -6.8 -4.70659 | AACGACATCTCTTCA CTGC TCA GCAG TTTTTCGATATCAAC YPN_1964 2223024 - 2220859 - | chemotaxis protein CheA TERM 2460 2221170 - 2221134 - G 74 -10.1 -3.55084 | overlap 2221132 2221166 TTTTAACATCAAAGA CGCGGTACAATTCAACC AAT GGTAGAAATTCACCGCG AACTTGCAGCACGCG TERM 2461 2222488 - 2222508 + g 71 -11.1 -2.7535 | opp_overlap 2222484 2222483, overlap 2222484 CAAACGAATACGCAT CCCGCCTTG AAG CAACGCGGG TGATGTGTTGCCAGC TERM 2462 2223011 - 2222998 - G 76 -3.1 -5.14563 | TGCTTCATCAAAAAA CGTCT GATA AAACG CGGTAATATCCATGC motB 2224324 - 2223041 - | flagellar motor protein MotB TERM 2463 2223444 - 2223466 + g 70 -2.6 -5.03994 | opp_overlap 2223449, overlap 2223445 ACCGTCCCGTGAGTA TCAATCTGCT TTA AGCCGGTTGC TTTTTCTATATCCAG TERM 2464 2223747 - 2223769 + g 73 -11.4 -3.00476 | overlap 2223752 AGGTCATCGGTGTGA CCGGATAAAC TGA GTTTATTCGG TATGTCATTCAGGAT YPN_1966 2225208 - 2224321 - | flagellar motor protein MotA TERM 2465 2224485 - 2224499 + g 79 -8.6 -4.40993 | ACAGCAGAGTCACTT TGATGC ATT GCATCA TTTTGGTCGTTTCTG YPN_1967 2225994 - 2225413 - | transcriptional activator FlhC YPN_1968 2226349 - 2226092 - | hypothetical protein TERM 2466 2226411 - 2226387 - R 78 -7.3 -4.45168 | GTTTTAAAACATAAA TTGAATGACAA AAT TTATCACTCAA AACCAGGGATCCTTC TERM 2467 2227503 - 2227463 - R 71 -9.1 -3.36569 | opp_overlap 2227467 2227469, overlap 2227461 2227465 2227467 CTAATCTTTTAAATA CACACACTATTCCAGGG CAGCCAC CCCCGGAATAGTGTCTT GAGATCAACCAGGCT TERM 2468 2227501 - 2227465 - R 86 -11.7 -3.24976 | opp_overlap 2227467 2227469, overlap 2227463 2227461 2227467 AATCTTTTAAATACA CACACTATTCCAGGG CAGCCAC CCCCGGAATAGTGTC TTGAGATCAACCAGG TERM 2469 2227499 - 2227467 - R 100 -14.3 -3.18571 | opp_overlap 2227467 2227469, overlap 2227465 2227463 2227461 TCTTTTAAATACACA CACTATTCCAGGG CAGCCAC CCCCGGAATAGTG TCTTGAGATCAACCA TERM 2470 2227467 - 2227499 + r 86 -12.1 -3.05844 | opp_overlap 2227467 2227465 2227463 2227461, overlap 2227469 TCTTTTAAATACACA CACTATTCCAGGG CAGCCAC CCCCGGAATAGTG TCTTGAGATCAACCA YPN_1969 2230236 - 2227537 - | Mg(2+) transport ATPase protein B TERM 2471 2229194 - 2229213 + g 71 -7.8 -4.11484 | opp_overlap 2229183, overlap 2229195 ACCACGACTTTACGC CGGGCCAT CGCG ATGGCCCC TTTTGCCAGATTAGA TERM 2472 2229195 - 2229212 + g 74 -11.3 -3.06569 | overlap 2229194 CCACGACTTTACGCC GGGCCAT CGCG ATGGCCC CTTTTGCCAGATTAG YPN_1970 2231335 - 2230637 - | Mg(2+) transport ATPase protein C TERM 2473 2232812 - 2232799 - gH 77 -4.5 -5.055 | GCAAGGCCTAAAAAA TGCAG AAGG CCGCA TAGCTCAGTCACAGC TERM 2474 2233475 - 2233446 - gH 76 -7.9 -4.1822 | gap 1, overlap 2233447 CTTCACTTGAACAAA CTGCGGCCAGCATG GAG CA-ACTGACCGCAA CCGTGAAACAGAATG TERM 2475 2233474 - 2233447 - gH 72 -9.2 -3.10611 | gap 1, overlap 2233446 TTCACTTGAACAAAC TGCGGCCAGCATG GAG CA-ACTGACCGCA ACCGTGAAACAGAAT YPN_1971 2232461 - 2233780 + | hypothetical protein YPN_1972 2233734 - 2234195 + | methyl-accepting chemotaxis protein III (MCP-III) TERM 2476 2234327 - 2234298 - T 95 -8 -5.2197 | gap 2, opp_overlap 2234298 GATAAAAAGCAAAAA CCGGAGGATAAGGT ATGA ACCTT--CCTCCGG TTTTTTATCGCAATA TERM 2477 2234298 - 2234327 + T 100 -8 -5.252 | gap 2, opp_overlap 2234298 GATAAAAAGCAAAAA CCGGAGGATAAGGT ATGA ACCTT--CCTCCGG TTTTTTATCGCAATA YPN_1973 2234569 - 2234378 - | hypothetical protein TERM 2478 2234744 - 2234757 + r 100 -9.5 -5.67063 | opp_overlap 2234744 ACAGACAGTAAAAAA CCCGC CTTA GCGGG TTTTTTTATAATCAG TERM 2479 2234757 - 2234744 - R 100 -9.5 -5.25893 | opp_overlap 2234744 ACAGACAGTAAAAAA CCCGC CTTA GCGGG TTTTTTTATAATCAG YPN_1974 2234996 - 2234784 - | cold shock protein TERM 2480 2235332 - 2235347 + H 70 -2.5 -5.07567 | AAATTGTTATCTCTT CGTAG TGCGCC CTGCG TTTTTTGGCCTCTCA TERM 2481 2237261 - 2237279 + G 89 -10.2 -4.42806 | GGCATTTCGTCAGTA CCCGCGCT TAC AGGGCGGG TTTATTTGGGACTGG lacZ 2235537 - 2238719 + | beta-D-galactosidase TERM 2482 2238905 - 2238923 + F 100 -11 -5.9003 | opp_overlap 2238904 CTTTGCAAAATTTAC GCGCTCAT CCT ATGGGCGC TTTTTTTGTTCCTTT TERM 2483 2238989 - 2239001 + F 71 -2 -5.15969 | TGATAGTTACGCACG TTCA CTCTA TGAA TTTTTTCCATTACAC YPN_1976 2239126 - 2240136 + | Zinc-binding dehydrogenase TERM 2484 2240281 - 2240261 - f 76 -9.7 -3.37879 | opp_overlap 2240240, overlap 2240251 AGCAAGGGCAACTAA CCCCCTTCA TCT TGAAGGGCG ACGGGTATAAAGGGT YPN_1977 2240419 - 2240952 + | hypothetical protein YPN_1978 2241034 - 2241195 + | hypothetical protein TERM 2485 2241745 - 2241756 + G 70 -2.2 -5.03747 | GTGTGACAAAATAAC CGGT GATG ACTG TTTTTTGAGCCGTTT YPN_1979 2241458 - 2241907 + | transcription regulator AsnC YPN_1980 2241999 - 2242898 + | hypothetical protein YPN_1981 2243201 - 2243404 + | hypothetical protein TERM 2486 2243529 - 2243564 + T 91 -5.5 -5.60993 | gap 2 TGCCGGTATTTATTT GCCGGGTCTGGCCTA CCTTTTAT TGGGCCA--CCCGGC TTTTTTTATGACAGC YPN_1982 2245031 - 2243706 - | phosphoanhydride phosphorylase TERM 2487 2244314 - 2244332 + g 82 -8.1 -4.51847 | opp_overlap 2244309, overlap 2244326 TCGATGATAACGCCA GTGGCCC ACTGA GGGTCAC TTTTGTCCCTTCTTT YPN_1983 2245243 - 2245335 + | hypothetical protein YPN_1984 2245505 - 2245332 - | hypothetical protein YPN_1985 2245970 - 2245563 - | hypothetical protein YPN_1986 2246106 - 2246963 + | hypothetical protein YPN_1987 2247883 - 2249463 + | methyl-accepting chemotaxis protein YPN_1988 2249583 - 2249843 + | hypothetical protein TERM 2488 2249897 - 2249916 + F 79 -7.8 -4.3129 | overlap 2249898 TTCCTCAATACATTC AGCCCTCA ATAT TGAGGGCG TTTTACTGCTGCCTG TERM 2489 2249898 - 2249915 + F 84 -11.3 -3.18292 | overlap 2249897 TCCTCAATACATTCA GCCCTCA ATAT TGAGGGC GTTTTACTGCTGCCT TERM 2490 2250393 - 2250403 + G 79 -6.8 -4.72986 | CTGCCCGAGAGTTTG GCTG GAA CAGC TTTTTAGTGAACCTA YPN_1989 2250119 - 2251162 + | LacI family sucrose operon repressor TERM 2491 2251296 - 2251255 - T 100 -14.7 -3.54 | opp_overlap 2251262, overlap 2251256 2251258 2251262 AGCACGCCATAAATA GTATAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTATAG ATACGTCAGAACTAC TERM 2492 2251295 - 2251256 - T 100 -18.2 -2.71918 | opp_overlap 2251262, overlap 2251255 2251258 2251262 GCACGCCATAAATAG TATAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTATA GATACGTCAGAACTA TERM 2493 2251293 - 2251258 - T 100 -16.4 -2.90065 | opp_overlap 2251262, overlap 2251256 2251255 2251262 ACGCCATAAATAGTA TAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTA TAGATACGTCAGAAC TERM 2494 2251289 - 2251262 - T 100 -12.8 -4.12037 | opp_overlap 2251262, overlap 2251258 2251256 2251255 CATAAATAGTATAAA CTTCACGAAAGC ATAA GCCCTCGTGAAG TTTATAGATACGTCA TERM 2495 2251262 - 2251289 + T 77 -8.4 -3.92869 | opp_overlap 2251258 2251256 2251255 2251262 CATAAATAGTATAAA CTTCACGAAAGC ATAA GCCCTCGTGAAG TTTATAGATACGTCA YPN_1990 2252561 - 2251308 - | isocitrate dehydrogenase TERM 2496 2252635 - 2252657 + H 83 -12 -2.80113 | TGAATATTCGTTCCG CGCCAATCCG AAA CGGATTGGGG TATAATGCGCTAATC TERM 2497 2252764 - 2252782 + G 74 -9.5 -3.57389 | overlap 2252762 GCCAGGCAGTCCCCC CCCGCTG CGCCA CGGCGGG TATTGTTATTCAATA YPN_1991 2252692 - 2253318 + | pseudouridine synthase TERM 2498 2253415 - 2253398 - g 70 -2.6 -5.00339 | overlap 2253399 ATCAACAATGAAAAA CGCTGG AACCAG CCAGCC GGTCATCTGGAAGCC YPN_1992 2253311 - 2253757 + | hypothetical protein TERM 2499 2253994 - 2253968 - g 82 -3.5 -5.30686 | opp_overlap 2253974, overlap 2253970 AATAGCCAGAAAAAA GTCATCGTCGG CATGT CCGGCGGTGTC GACTCTTCCGTTTCC TERM 2500 2254378 - 2254362 - g 71 -6.5 -4.13945 | opp_overlap 2254361 ATGTTGATGGTAAAA GCCGC CTACTGC GCGGC CTTGATGGAAATAAA trmU 2253944 - 2255059 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YPN_1994 2255117 - 2255743 + | hypothetical protein YPN_1995 2255804 - 2257174 + | adenylosuccinate lyase TERM 2501 2257186 - 2257231 + F 100 -13 -3.34192 | gap 1, opp_overlap 2257189 2257191, overlap 2257189 GTAATATTCTTTATC TAATACAGGTGGC-TTAGTTT GGTAA AAGCTAACGCCATCTGTATTA TTCCTTCCCCCCCTT TERM 2502 2257189 - 2257228 + F 86 -10.3 -3.81146 | gap 1, opp_overlap 2257189 2257191, overlap 2257186 ATATTCTTTATCTAA TACAGGTGGC-TTAGTTT GGTAA AAGCTAACGCCATCTGTA TTATTCCTTCCCCCC TERM 2503 2257528 - 2257508 - g 74 -6.9 -4.42386 | GTTTGACCGACAAAA TTATAGCCA TAT TGGCAATAA AAATATGGGTGGGAT YPN_1996 2257362 - 2257985 + | lipoprotein YPN_1997 2258196 - 2258867 + | DNA-binding transcriptional regulator PhoP TERM 2504 2259718 - 2259705 - g 76 -8.1 -4.13014 | CTCACAGCCTTAAAA CACCG CTGG CGGTG CTACAAACCACACTA YPN_1998 2258873 - 2260327 + | sensor protein PhoQ YPN_1999 2260357 - 2261532 + | hypothetical protein TERM 2505 2261745 - 2261729 - T 84 -10.8 -3.72051 | opp_overlap 2261729 GTCAATAACCTCAAA CGCCCC TTTTC GGGGCG TTTCTCTCTATCGTT TERM 2506 2261729 - 2261745 + T 93 -10.8 -4.1897 | opp_overlap 2261729 GTCAATAACCTCAAA CGCCCC TTTTC GGGGCG TTTCTCTCTATCGTT YPN_2000 2263000 - 2261765 - | peptidase T TERM 2507 2262587 - 2262597 + g 71 -6.8 -4.14739 | CGCTTTATCATCCGC CCCT AAC AGGG TTTTACCATCAGTCG YPN_2001 2264166 - 2263330 - | NAD-dependent deacetylase TERM 2508 2264203 - 2264217 + r 85 -7.2 -4.83615 | TATCTGTCTTGTTAT TAATCG TGA CGATTA TTTTTCTGCCAAATG YPN_2002 2264382 - 2264215 - | hypothetical protein YPN_2003 2265130 - 2264360 - | N-acetyl-D-glucosamine kinase TERM 2509 2264763 - 2264731 - G 70 -9.8 -3.2327 | opp_overlap 2264734, overlap 2264720 2264734 2264750 TTAACCCACCACCAA CACCGGTGCCGAGA ATAAG CCCCAGCACCGTTG GGTAAGTGCGAAACT YPN_2004 2266396 - 2265149 - | outer membrane-specific lipoprotein transporter subunit LolE TERM 2510 2265834 - 2265820 - G 70 -4.2 -4.62783 | CACTCAGTTGAAAAA TACCGG CAA CCTGTA AACGGATGCGCTTAG lolD 2267100 - 2266396 - | lipoprotein transporter ATP-binding subunit YPN_2006 2268295 - 2267093 - | outer membrane-specific lipoprotein transporter subunit LolC TERM 2511 2267821 - 2267805 - G 77 -10.1 -3.78775 | opp_overlap 2267805 CTCGGTACCATCAAA CGCAGTG TTT CACCGCG TTTAACCCCGAGCTG TERM 2512 2268240 - 2268224 - G 90 -10.1 -4.5123 | AAGCCACGAAACAAA CCGACCG AAG CGGTCAG AAGCACGCCCACGCA TERM 2513 2270540 - 2270518 - g 71 -6.3 -4.34486 | gap 1, overlap 2270515 2270520 ACCAATAATAAACAA GTGGCGGTGT TGGT AC-CCACCAC CCTGCTGGCTCAACA YPN_2007 2268565 - 2272011 + | transcription-repair coupling factor YPN_2008 2272789 - 2272250 - | hypothetical protein TERM 2514 2272918 - 2272936 + r 70 -7.3 -3.85698 | TAAAATACCGGGATA CGGCGTG CGTGA CTCGCCG TTTGTAAACACAGGG TERM 2515 2273145 - 2273124 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_2009 2274327 - 2273119 - | transposase for the IS285 insertion element YPN_2010 2274836 - 2274423 - | hypothetical protein YPN_2011 2275332 - 2274844 - | hypothetical protein TERM 2516 2275827 - 2275848 + r 95 -13.1 -3.15663 | overlap 2275843 TGCTAGCCCGCAGGG TGAGCCTCA CGAA TGAGGCTCA TTAATCCCGATGAGT YPN_2012 2277255 - 2275951 - | NADH dehydrogenase TERM 2517 2276963 - 2276975 + g 82 -7.7 -4.6313 | opp_overlap 2276962 TGTTCATCACAAATC TCAGC CAG GCTGA TTGTTTTGTTTTCAC YPN_2013 2278172 - 2277630 - | hypothetical protein YPN_2014 2279319 - 2278300 - | beta-hexosaminidase TERM 2518 2279433 - 2279421 - R 86 -7.7 -4.68919 | AAAGACAAATTAAAA CGTTG GCG CAACG GCGCGGCCCATGCCA YPN_2015 2280268 - 2279402 - | hypothetical protein TERM 2519 2280076 - 2280096 + g 76 -7.6 -4.37658 | ATTTACGCTCACGTC GTCGGTTG ACCCC CAACTGAC TTTTGTGCGGCGATT TERM 2520 2280218 - 2280192 - G 74 -11.7 -2.73994 | gap 1, opp_overlap 2280192 2280191 2280189, overlap 2280195 2280196 ACCGGGCTAATATGA CAAT-CGGCGGT TTTC ACCGCCGGATTG ATGTTTGCTATTAAG TERM 2521 2280192 - 2280218 + g 74 -11.7 -2.72568 | gap 1, opp_overlap 2280192 2280195 2280196, overlap 2280191 2280189 ACCGGGCTAATATGA CAAT-CGGCGGT TTTC ACCGCCGGATTG ATGTTTGCTATTAAG TERM 2522 2280214 - 2280195 - G 70 -9.2 -3.52073 | opp_overlap 2280192 2280191 2280189, overlap 2280192 2280196 GGGCTAATATGACAA TCGGCGGT TTTC ACCGCCGG ATTGATGTTTGCTAT TERM 2523 2280213 - 2280196 - G 76 -12.7 -2.70923 | opp_overlap 2280192 2280191 2280189, overlap 2280195 2280192 GGCTAATATGACAAT CGGCGGT TTTC ACCGCCG GATTGATGTTTGCTA YPN_2016 2280824 - 2280249 - | putative lipoprotein TERM 2524 2280896 - 2280884 - R 78 -10.5 -3.34428 | overlap 2280882 2280880 2280878 AAAAATAAATAGAGA CGCGC ACT GCGCG CATTAAAATTATTGT YPN_2017 2281254 - 2280865 - | putative lipoprotein YPN_2018 2281642 - 2281289 - | purine nucleoside phosphoramidase YPN_2019 2282634 - 2281816 - | shikimate 5-dehydrogenase TERM 2525 2283003 - 2282971 - R 100 -11.3 -4.42806 | opp_overlap 2282978, overlap 2282975 2282977 2282978 TTAGTTTGAAATAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2526 2282999 - 2282975 - R 100 -9.9 -4.78326 | opp_overlap 2282978, overlap 2282971 2282977 2282978 TTTGAAATAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2527 2282997 - 2282977 - R 100 -12.5 -3.99693 | opp_overlap 2282978, overlap 2282975 2282971 2282978 TGAAATAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2528 2282996 - 2282978 - R 100 -16 -2.98189 | opp_overlap 2282978, overlap 2282977 2282975 2282971 GAAATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2529 2282978 - 2282996 + r 100 -16 -4.8048 | opp_overlap 2282978 2282977 2282975 2282971 GAAATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2020 2283535 - 2283077 - | transposase for the IS1541 insertion element TERM 2530 2283648 - 2283666 + r 100 -16 -4.37092 | opp_overlap 2283637 2283648 GAAAGCTTTACTGAA CCCCCAGC ATA GCTGGGGG TTTTCTGGGCACAAT TERM 2531 2283666 - 2283648 - R 100 -16 -3.07307 | opp_overlap 2283648, overlap 2283637 GAAAGCTTTACTGAA CCCCCAGC ATA GCTGGGGG TTTTCTGGGCACAAT TERM 2532 2283685 - 2283702 + r 100 -12.7 -4.35116 | opp_overlap 2283685 TCTGGGCACAATAAA GGGAGGC TTTC GCCTCCC TTTTGCTCTCCCCTA TERM 2533 2283702 - 2283685 - R 100 -12.7 -4.30719 | opp_overlap 2283685 TCTGGGCACAATAAA GGGAGGC TTTC GCCTCCC TTTTGCTCTCCCCTA YPN_2021 2285158 - 2283725 - | glucose-specific PTS system IIBC components TERM 2534 2285362 - 2285336 - R 73 -7.3 -4.15044 | opp_overlap 2285336 2285339 GTTTCTTTCAAGAAA GCACGTAATCC CTCTC GGATTTCGTAC TTTACGTAAAGAAAC YPN_2022 2286273 - 2285464 - | putative metallodependent hydrolase YPN_2023 2287310 - 2286288 - | DNA polymerase III subunit delta' TERM 2535 2286695 - 2286652 - G 71 -7.3 -4.03413 | opp_overlap 2286652 2286680, overlap 2286687 AGCCCGCTACACAAA GCGCTGCGGATACTCCAAC GCTCTG GTTGGAGCAACCGCTCAGC CGCCAGCGGTGCGCC TERM 2536 2286848 - 2286835 - G 78 -3.7 -5.17744 | overlap 2286837 2286838 AGATACCAATAAAAA CAGCG GCTA CGCAG TGTAGCCAGCAAGCT TERM 2537 2286858 - 2286837 - G 71 -6.6 -4.20491 | gap 1, overlap 2286835 2286838 ATACCAATAAAAACA GC-GGCTAC GCAGT GTAGCCAGC AAGCTGGCGGGTTGG tdk 2287948 - 2287310 - | thymidylate kinase TERM 2538 2287865 - 2287899 + g 74 -7.8 -4.18762 | gap 1, overlap 2287861 GTTAATCCCTTGGGC CCGCAGCACCGCGAC CACGGT GTCGCGG-GTGGTGG TTTTCCCTGCCCCTT YPN_2025 2288963 - 2287938 - | hypothetical protein TERM 2539 2289139 - 2289113 - R 84 -10.1 -3.8381 | gap 1, opp_overlap 2289122, overlap 2289114 2289129 AGACAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2540 2289140 - 2289114 - R 72 -10.1 -2.89563 | gap 1, opp_overlap 2289122, overlap 2289113 2289129 GACAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPN_2026 2290058 - 2289252 - | 4-amino-4-deoxychorismate lyase TERM 2541 2290396 - 2290372 - R 100 -9.9 -4.50761 | opp_overlap 2290375, overlap 2290374 2290375 ATGAATTTAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2542 2290394 - 2290374 - R 100 -12.5 -3.8535 | opp_overlap 2290375, overlap 2290372 2290375 GAATTTAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2543 2290393 - 2290375 - R 100 -16 -2.90126 | opp_overlap 2290375, overlap 2290374 2290372 AATTTAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2544 2290375 - 2290393 + r 100 -16 -4.8048 | opp_overlap 2290375 2290374 2290372 AATTTAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2027 2290932 - 2290474 - | transposase for the IS1541 insertion element TERM 2545 2291045 - 2291063 + r 100 -16 -4.37092 | opp_overlap 2291045 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2546 2291063 - 2291045 - R 100 -16 -3.07307 | opp_overlap 2291045 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2547 2291106 - 2291078 - R 74 -9.6 -3.28712 | opp_overlap 2291083 2291085, overlap 2291083 GTTTTCTGGGCACAA TAAAAGACCCGG AAAAA CCGGGCCTTTTT AGCATCAGAACCTTA TERM 2548 2291083 - 2291101 + r 81 -7.3 -4.62069 | opp_overlap 2291083 2291078, overlap 2291085 CTGGGCACAATAAAA GACCCGG AAAAA CCGGGCC TTTTTAGCATCAGAA TERM 2549 2291101 - 2291083 - R 100 -9.5 -4.77165 | opp_overlap 2291083 2291085, overlap 2291078 CTGGGCACAATAAAA GACCCGG AAAAA CCGGGCC TTTTTAGCATCAGAA YPN_2028 2292373 - 2291132 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2550 2292418 - 2292443 + r 86 -11.9 -2.91681 | opp_overlap 2292418 2292419 TTCGGACAAAAAAAA CTTAGGCGGTC GAAT GACCGCCTAAC TATCTAAACTTAAAG TERM 2551 2292443 - 2292418 - R 100 -11.9 -5.93809 | opp_overlap 2292418, overlap 2292419 TTCGGACAAAAAAAA CTTAGGCGGTC GAAT GACCGCCTAAC TATCTAAACTTAAAG TERM 2552 2292442 - 2292419 - R 100 -15.4 -4.15201 | opp_overlap 2292418, overlap 2292418 TCGGACAAAAAAAAC TTAGGCGGTC GAAT GACCGCCTAA CTATCTAAACTTAAA acpP 2292704 - 2292468 - | acyl carrier protein fabG 2293592 - 2292858 - | 3-ketoacyl-(acyl-carrier-protein) reductase YPN_2031 2294535 - 2293606 - | malonyl CoA-acyl carrier protein transacylase YPN_2032 2295523 - 2294573 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2553 2294967 - 2294955 - G 70 -9.1 -3.63627 | overlap 2294964 TCTGGATACGGTAAA GCGAG CAA CTCGC CATAACGACCATCAG TERM 2554 2295081 - 2295056 - G 74 -9.9 -3.57263 | gap 1, opp_overlap 2295062, overlap 2295061 AGCGCCATCGCCAAA CAGAATGATCGT ACC ACGATC-TTCTG GATCCAATGCACGGG YPN_2033 2296564 - 2295530 - | putative glycerol-3-phosphate acyltransferase PlsX rpmF 2296765 - 2296598 - | 50S ribosomal protein L32 YPN_2035 2297302 - 2296778 - | hypothetical protein TERM 2555 2296996 - 2297042 + g 70 -11.6 -2.69471 | overlap 2296995 GCTCGTACGCTTCCG GTAATGCTTCAGCCTGCTCATC ATT GACGATCGGGCTGAAACAATAC GTTGTATGAACATGG YPN_2036 2297432 - 2298040 + | Maf-like protein TERM 2556 2298095 - 2298117 + T 76 -11.2 -2.56836 | opp_overlap 2298095, overlap 2298094 2298093 ACAGTCGAATAAAAA CGGGGCGCAT GCT GTGCCCCCCG CCTTTTATGATCATC TERM 2557 2298117 - 2298095 - T 100 -10.5 -5.09204 | opp_overlap 2298094 2298093 2298095 ACAGTCGAATAAAAA CGGGGCGCA TGCTG TGCCCCCCG CCTTTTATGATCATC YPN_2037 2299125 - 2298163 - | 23S rRNA pseudouridylate synthase C TERM 2558 2298409 - 2298426 + g 70 -9.1 -3.53811 | overlap 2298408 GATTTGATGCGTCCG GCCAGTC ACTG GGCTGGC TTTAACCAGCGTGGC TERM 2559 2300302 - 2300288 - g 76 -2.7 -5.15634 | opp_overlap 2300294 2300297, overlap 2300290 GATGCGATTAAAAAA GCGGC TGAAG GTCGC CCCGCGCCCTTCTTA TERM 2560 2300294 - 2300314 + G 74 -11.1 -3.18264 | opp_overlap 2300288 2300290, overlap 2300297 ATTAAAAAAGCGGCT GAAGGTCGC CCC GCGCCCTTC TTAATCCATCAGGAA TERM 2561 2300940 - 2300960 + G 71 -6.1 -4.28791 | GTACCGGCACCGTAC GTGACAATG AAT CGCTGTCAC TTTCTATTCTGCGTT TERM 2562 2302258 - 2302272 + G 74 -7.8 -4.18018 | opp_overlap 2302251 GGCACAATCGGCCAT GCCTCT GGC AGGGGC TTTTGCCTCACCAGA TERM 2563 2302538 - 2302515 - g 80 -12.4 -3.43203 | overlap 2302512 2302511 2302509 TTATGACAACACCAA CCGTTGCGGT TGCC ACCGCAGCGG TAACACTGGCCCCAC rne 2299700 - 2303350 + | ribonuclease E TERM 2564 2304628 - 2304649 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_2039 2303446 - 2304654 + | transposase for the IS285 insertion element bssS 2304913 - 2304617 - | biofilm formation regulatory protein BssS TERM 2565 2304966 - 2304987 + r 75 -7.3 -4.371 | TAACGAGGATCAATG CGGCTCATT ACCG AGTGAGCTG TTTTAGTATACTCAA TERM 2566 2305166 - 2305144 - R 84 -5.4 -5.26875 | overlap 2305122 2305145 GTTTTAAGCAAAAAA GGCTGAGGAG CGA CTCCCCGGCA AAATGGTATTGTGGT TERM 2567 2305165 - 2305145 - R 78 -8.9 -3.75402 | overlap 2305122 2305144 TTTTAAGCAAAAAAG GCTGAGGAG CGA CTCCCCGGC AAAATGGTATTGTGG YPN_2041 2305664 - 2305419 - | DNA damage-inducible protein I YPN_2042 2307023 - 2305977 - | dihydroorotase YPN_2043 2307258 - 2307545 + | hypothetical protein TERM 2568 2307732 - 2307687 - T 100 -15 -4.62957 | gap 1, overlap 2307692 2307693 2307718 AGAATCAAAGTAAAA TTAA-ACGGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCCATGTCAA CCGCCAGAGAAAGTG TERM 2569 2307726 - 2307692 - T 100 -18.7 -4.29472 | overlap 2307687 2307693 2307718 CAAAGTAAAATTAAA CGGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCCA TGTCAACCGCCAGAG TERM 2570 2307725 - 2307693 - T 100 -20 -3.16056 | overlap 2307692 2307687 2307718 AAAGTAAAATTAAAC GGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCC ATGTCAACCGCCAGA TERM 2571 2307848 - 2307827 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_2044 2309030 - 2307822 - | transposase for the IS285 insertion element TERM 2572 2309181 - 2309206 + H 95 -7.7 -5.06816 | gap 1, opp_overlap 2309179 2309181 TATTACCCATAAACA GGCACCAG-TAA ATA TTATCTGGTGTC TTTTTATTAACCACT solA 2309391 - 2310506 + | N-methyltryptophan oxidase YPN_2046 2310773 - 2311387 + | LuxR family regulatory protein TERM 2573 2311900 - 2311939 + T 100 -11.4 -4.37092 | overlap 2311901 TACCCCATTTTCGGT TCCTCAGGGCCGTAGG CCAATTAA CCAGTGGCCCTGAGGG TTTTCTAACCACCGT TERM 2574 2311901 - 2311938 + T 93 -12.7 -3.21934 | overlap 2311900 ACCCCATTTTCGGTT CCTCAGGGCCGTAGG CCAATTAA CCAGTGGCCCTGAGG GTTTTCTAACCACCG tqsA 2313017 - 2311959 - | putative transport protein YPN_2048 2314233 - 2313166 - | hypothetical protein YPN_2049 2314996 - 2314592 - | hypothetical protein YPN_2050 2315247 - 2315086 - | hypothetical protein YPN_2051 2315961 - 2315284 - | hypothetical protein TERM 2575 2315943 - 2315926 - G 71 -5.7 -4.34866 | ACCGAAGAAGACAAA CTTTTTA CTCG TAAAAAG AGAAGGACTGCGGTC YPN_2052 2316392 - 2317036 + | N-acylhomoserine lactone synthase YpeI YPN_2053 2317766 - 2317029 - | quorum-sensing transcriptional activator YpeR TERM 2576 2317219 - 2317231 + g 81 -6.3 -5.0095 | TCATTTTCCCGAGGA GAGAA AAT TTCTC TTTTATTCTCTTTTT TERM 2577 2317867 - 2317850 - R 85 -4.2 -5.52909 | CAAGATGTAAAAAAA TGTGAT CACTGC ATCACA TTCAAATTATTGACA TERM 2578 2318112 - 2318139 + r 91 -12.1 -3.47227 | opp_overlap 2318107 GCTCTATGAACTCCG CCATCTGGGTG CATTTA CATCCAGATGG TTGTGATGCTTACCC YPN_2054 2319179 - 2318253 - | LysR family transcriptional regulator TERM 2579 2319675 - 2319652 - g 84 -4.6 -5.32882 | gap 1 TACCATCAGAAAAAA TCAGGATGGAC GAT GTCC-CCCTAA ATCGCTTCCATATAA TERM 2580 2319801 - 2319774 - g 82 -11.4 -3.78409 | opp_overlap 2319769 TTAATTCAACTCAAA CCCATAATGGCA CTTA CACCATTATGGG AGGGATTACTCGGAT YPN_2055 2319627 - 2320985 + | transporter protein YPN_2056 2321032 - 2321535 + | hypothetical protein TERM 2581 2322539 - 2322549 + G 72 -8.2 -3.90762 | GCGCGGGAAGCTCGC CCGC CAA GCGG TATTTTTGCCCCATA YPN_2057 2321546 - 2322565 + | oxidoreductase TERM 2582 2322636 - 2322595 - T 71 -9.7 -2.71731 | gap 1 GTGATTCTTTAACTA TTGGCCAGTG-CAACATA AAATCAA TACGTTAACACTGGCCAA AAAGAATCAAAACCA YPN_2058 2323197 - 2322643 - | hypothetical protein YPN_2059 2324212 - 2323208 - | hypothetical protein TERM 2583 2323618 - 2323604 - G 76 -5.7 -4.62872 | ATCAACGGTGAAAAA GGCAA AACCG TTGCC CGCTAAACCTTGTTC TERM 2584 2324064 - 2324080 + g 84 -4.3 -5.34309 | overlap 2324065 2324066 TTCAACCGGTTGGAG ATGGTGC CCC GCACCGC TTTTTCTTTAATGAT YPN_2060 2325180 - 2324230 - | hypothetical protein YPN_2061 2326523 - 2325177 - | hypothetical protein YPN_2062 2330219 - 2326932 - | hypothetical protein TERM 2585 2327276 - 2327254 - G 70 -9 -3.54424 | CTGGATTGTCGGAAA GGGGGGCACC GTT GCTGCTCCCC ACTCCAGGTCGCCTG TERM 2586 2327387 - 2327399 + g 74 -7.7 -4.20454 | opp_overlap 2327387 2327386 AATCAACAAAATTAT CTCGA GGT TCGAG TTTGGTTCTTTCTTG TERM 2587 2327529 - 2327540 + g 70 -4.4 -4.67353 | TTTGCAATAAACGGG GATC GCCG GATC TTTTTGAGTCAGTGC YPN_2063 2331196 - 2330216 - | hypothetical protein TERM 2588 2331924 - 2331947 + H 74 -6.6 -4.28361 | AGGTGCCCCCCCTGC GCCCATAGCC TTTA GGCTAAGGCC TTTTAGTCAGATTGA YPN_2064 2331981 - 2333225 + | membrane protein TERM 2589 2333790 - 2333755 - T 86 -12 -3.14132 | opp_overlap 2333748 TGGCTGGTGTACTAA TGGTGCTCTGAAATAT AAAA ATAATTCAGAGCACCG GGGCTACTATTTACA YPN_2065 2335094 - 2333820 - | hypothetical protein TERM 2590 2334693 - 2334715 + g 73 -6.2 -4.59207 | opp_overlap 2334697 TGCACGCCATGTCCA CCAATTTGGC TCC GCCACACTGG TTTTATACTCTTTAT TERM 2591 2334886 - 2334869 - G 80 -3.3 -5.252 | overlap 2334870 GACGTTGATAAAAAA TTGCCGC GCGG GCGACAT CATCAATGGCGGATA YPN_2066 2336254 - 2335133 - | hypothetical protein TERM 2592 2335509 - 2335526 + g 70 -8.5 -3.75332 | opp_overlap 2335512 ATACCGACGTGCACA TTATCGG CGAC CCGATAA TTTACATTAACAAGT TERM 2593 2335695 - 2335709 + g 87 -4.2 -5.52986 | overlap 2335693 CCAATATTGTTATCG CCGC CTGTCGT GCGG TTTTTTTCGTAGCCT TERM 2594 2335892 - 2335881 - G 78 -3.6 -5.14563 | TGCTTGAGTAAAAAA CCGG TATT CCAG CCCGTATCGCCAAAA TERM 2595 2336308 - 2336323 + r 76 -2.6 -5.38047 | overlap 2336305 2336309 GGGAACTCCACCCAA TCTAAT TGAT ATTAGG TTTTTTCTATAAATC YPN_2067 2337309 - 2336371 - | hypothetical protein YPN_2068 2338391 - 2337336 - | hypothetical protein TERM 2596 2338419 - 2338440 + r 83 -8.7 -4.16943 | opp_overlap 2338418 2338419 TATAAATAGCAATAT CGTGGTGAG TCAT TTCACCGCG TTTTCGAGTATCAAA YPN_2069 2339362 - 2338538 - | sugar ABC transporter, permease protein YPN_2070 2340238 - 2339363 - | sugar ABC transporter, permease protein TERM 2597 2340178 - 2340150 - G 70 -2.5 -4.90778 | gap 1, opp_overlap 2340158, overlap 2340158 GCGAGCCAAATAAAA GGATAAAACCAG AATATG CTGGTAT-ATCC CAGATAAGAGGCCGC YPN_2071 2341633 - 2340347 - | solute-binding protein TERM 2598 2341720 - 2341746 + H 70 -3.7 -4.79451 | opp_overlap 2341720 2341721 2341723, overlap 2341715 2341723 GCGTAATTTCGATAA TGATGTGAAGT ATTTC ACATCTCATCA TTTTATGTTTAACGT YPN_2072 2341905 - 2342945 + | LacI family transcriptional regulator YPN_2073 2342962 - 2344350 + | phosphomannomutase TERM 2599 2344423 - 2344390 - f 100 -14.7 -4.93177 | overlap 2344394 TAAAAACTAATAAAA TCAACCTCGCGTTCA TTAT TGAACGCGAGGGTAA ATAGCAGCATATTGT TERM 2600 2344419 - 2344394 - f 100 -17.7 -3.84772 | overlap 2344390 AACTAATAAAATCAA CCTCGCGTTCA TTAT TGAACGCGAGG GTAAATAGCAGCATA YPN_2074 2344450 - 2345529 + | mannitol transport ATP-binding protein YPN_2075 2345782 - 2345657 - | hypothetical protein YPN_2076 2346324 - 2345794 - | hypothetical protein YPN_2077 2347094 - 2346597 - | hypothetical protein YPN_2078 2347553 - 2347149 - | hypothetical protein TERM 2601 2347396 - 2347420 + g 70 -2.2 -4.98255 | gap 2 TTCTCTGTACAGATT GACC-AGC-TAG TCT CTGTGCTCGGTC TTTTTCTCGTTCCGC YPN_2079 2347862 - 2347695 - | hypothetical protein TERM 2602 2348020 - 2348049 + r 95 -12.9 -3.16055 | gap 1, opp_overlap 2348024 2348025, overlap 2348008 2348025 ATCTTAGAGTTTGAA GCAAGCCCCAGCCA AAT TGGCCGGG-CTTGC TTCATCACGGGTTTC TERM 2603 2348045 - 2348024 - R 71 -8.7 -3.35371 | gap 1, opp_overlap 2348020 2348008 2348025, overlap 2348025 TAGAGTTTGAAGCAA GCCCCAGCCA AAT TGGCCGGG-C TTGCTTCATCACGGG YPN_2080 2348262 - 2348065 - | hypothetical protein YPN_2081 2350305 - 2348272 - | hypothetical protein TERM 2604 2348311 - 2348323 + g 73 -3.3 -5.00616 | overlap 2348312 GTTAGAAATATACTT ACCTG TTT CAGGA TTTTTTACACCAAAG TERM 2605 2350368 - 2350415 + r 100 -22.4 -3.18264 | gap 1 TATCGCTAGGCCCAA TGCCGATCAGTTAAGGATC-GGT TGA ACGAGATCCTTAACTGATCGGCA TTGCTGCATAGCAGG TERM 2606 2350479 - 2350447 - R 93 -12.1 -3.58726 | opp_overlap 2350450, overlap 2350450 GTTTTCTATAGACAA TAATTATCCTCCGGC ATA GTCGGGGGATAATTA TTCAAGGTTTAGGAT TERM 2607 2350450 - 2350476 + r 100 -13.8 -3.66772 | opp_overlap 2350447 2350450 TTCTATAGACAATAA TTATCCTCCGGC ATA GTCGGGGGATAA TTATTCAAGGTTTAG TERM 2608 2350476 - 2350450 - R 83 -9.4 -3.92996 | opp_overlap 2350450, overlap 2350447 TTCTATAGACAATAA TTATCCTCCGGC ATA GTCGGGGGATAA TTATTCAAGGTTTAG TERM 2609 2350696 - 2350682 - R 93 -2.8 -5.95539 | TCCTAAACAAAAAAA TACAGC CCA ACCGTA TAAGATAGCTAATAT YPN_2082 2351220 - 2350969 - | hypothetical protein YPN_2083 2351974 - 2351465 - | hypothetical protein TERM 2610 2351981 - 2351993 + r 71 -3.3 -5.02715 | overlap 2351982 CATATCCATATTATT TCACC TTC GGTGC TTTTTGGTTTGGTAT YPN_2084 2359523 - 2351976 - | hemolysin TERM 2611 2358741 - 2358755 + g 73 -9.2 -3.69092 | CACGGTTGGCCGCGG GCTGCC ATC GGCGGC TTTGGCGTTAATGTT YPN_2085 2361415 - 2359727 - | hemolysin activator protein YPN_2086 2363033 - 2362068 - | dioxygenase beta subunit TERM 2612 2362407 - 2362422 + g 80 -10.4 -3.69395 | ACCGCGTTGTGTTGC CGCCGT TTTA ACGGCG TTATTCAATGATACC TERM 2613 2362810 - 2362834 + g 100 -16.5 -3.53091 | GAATGCTCACTCAGG CGCACCGCTAT TTG GTAGCGGTGCG TTTCAAAAGGAGAAT TERM 2614 2363117 - 2363093 - R 100 -14.3 -3.54951 | TACGCTATCAGAGAA GACCCACAGCG GCT CACTGTGGGCC ATAATAATAGGCTAC YPN_2087 2363446 - 2363129 - | dioxygenase alpha subunit YPN_2088 2364183 - 2363425 - | dioxygenase alpha subunit YPN_2089 2365781 - 2364300 - | putative transporter TERM 2615 2366331 - 2366297 - R 78 -10 -3.45031 | overlap 2366292 2366299 TTCTCAAAAAGTTAA TAGGCATTCGTCCGAT TAA AACGGACGCATACCCA AACCCGCCAACGCAG TERM 2616 2366329 - 2366299 - R 78 -10.4 -3.2916 | overlap 2366297 2366292 CTCAAAAAGTTAATA GGCATTCGTCCGAT TAA AACGGACGCATACC CAAACCCGCCAACGC TERM 2617 2366437 - 2366463 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2366426, overlap 2366432 2366438 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2618 2366438 - 2366464 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2366426, overlap 2366432 2366437 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_2090 2367660 - 2366563 - | tartrate dehydrogenase YPN_2091 2367751 - 2368692 + | LysR family transcriptional regulator TERM 2619 2368804 - 2368790 - f 74 -4.2 -5.08088 | AACGTGGAATAAAAA CTCAGG ACG CTTGAG AGGTAAAAATTACCC YPN_2092 2368939 - 2369943 + | LacI family transcriptional regulator YPN_2093 2371068 - 2370076 - | sugar transport system, permease protein YPN_2094 2372555 - 2371065 - | sugar transport system, ATP-binding protein YPN_2095 2373512 - 2372595 - | sugar binding protein precursor YPN_2096 2374913 - 2373687 - | zinc-binding dehydrogenase TERM 2620 2374799 - 2374809 + g 71 -5.4 -4.56597 | overlap 2374793 GTATGGATACAATGT TGAC GTT GTCA TTTTTGAACAAACCA TERM 2621 2375288 - 2375278 - R 86 -6.8 -4.98672 | overlap 2375271 TTCAAAAAGACAAAA CGTC GGT GACG GTGAGAAATAAAAAA YPN_2097 2376218 - 2375496 - | hypothetical protein TERM 2622 2375998 - 2376011 + g 73 -5.3 -4.614 | opp_overlap 2375998, overlap 2375989 CCGTTGTGATAACAA TCATC TATA GATGA TTTTATATCCTTCAA YPN_2098 2376902 - 2376360 - | hypothetical protein TERM 2623 2377099 - 2377076 - R 100 -11 -4.81083 | GGTAACCATTAAAAA CCCCCAGC AAATCACG GCTGGGGG AAGATAAAAGCACGG YPN_2099 2378078 - 2377140 - | membrane protein TERM 2624 2378333 - 2378318 - R 100 -9 -5.82316 | opp_overlap 2378318 2378317 AGCAGGCAAAAAAAA TCCGCT CGAA AGCGGA CTTTTATCAGACACA ompX 2378918 - 2378394 - | outer membrane protein X YPN_2101 2379257 - 2379153 - | hypothetical protein TERM 2625 2379626 - 2379609 - g 76 -6.9 -4.57837 | ACATGTCGTTAAAAA CGGTGCC ATTA GGCATCG CTGTAGCACTGGAAT TERM 2626 2379963 - 2379974 + G 73 -5.8 -4.57755 | TCTTGCCCATTGCAC TGGC CGTC GCCA TTTTGTCTACTGCAT YPN_2102 2379323 - 2380210 + | threonine and homoserine efflux system YPN_2103 2380226 - 2380723 + | hypothetical protein TERM 2627 2381364 - 2381374 + G 70 -8.2 -3.65991 | overlap 2381363 TGGCTGCGGGCAACG GGGC TAC GCCC TTATCTTGCCCCCCT YPN_2104 2380746 - 2381522 + | trans-aconitate 2-methyltransferase YPN_2105 2381779 - 2382282 + | DNA starvation/stationary phase protection protein Dps TERM 2628 2382317 - 2382333 + F 76 -10.8 -2.71364 | opp_overlap 2382317 CTATTACGCTGAACA GGGCCG TTAAC CGGCCC TGCTTGCCGCCCTCC TERM 2629 2382333 - 2382317 - f 79 -10.8 -3.04792 | opp_overlap 2382317 CTATTACGCTGAACA GGGCCG TTAAC CGGCCC TGCTTGCCGCCCTCC TERM 2630 2383227 - 2383197 - g 78 -13.4 -2.65354 | opp_overlap 2383194, overlap 2383194 2383193 2383202 CGCAGTTGAAAGCGA CCCAAGGCGAAAAT GCG ATTGTCACCTTGGG CTATGCGTTAAATCC YPN_2106 2382602 - 2383729 + | hypothetical protein glnH 2384299 - 2385042 + | glutamine ABC transporter periplasmic protein glnP 2385077 - 2385733 + | glutamine ABC transporter permease protein TERM 2631 2386052 - 2386042 - gT 79 -6.8 -4.63218 | overlap 2386043 TTTGGCCCAACAAAA GTGC GTG GCAC ATCCAAGGAAGAGGC glnQ 2385643 - 2386452 + | glutamine ABC transporter ATP-binding protein TERM 2632 2386531 - 2386559 + T 100 -8.8 -5.26918 | opp_overlap 2386526 2386531 TGGCTAGAAATCACA CTGGCGGACATC TTACT GATACCCGCCAG TTTTTTATAGGCTAT TERM 2633 2386559 - 2386531 - T 95 -13.2 -3.05997 | opp_overlap 2386531, overlap 2386526 TGGCTAGAAATCACA CTGGCGGACATC TTACT GATACCCGCCAG TTTTTTATAGGCTAT YPN_2110 2387990 - 2386692 - | chemotactic transducer TERM 2634 2386852 - 2386864 + g 71 -6.3 -4.39989 | overlap 2386843 ATCGCGGCGGTAACC CCATT CTG AATGG TTTTAGTCATTTGCT TERM 2635 2388027 - 2388045 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_2111 2388049 - 2389071 + | transposase for insertion sequence IS100 TERM 2636 2389152 - 2389138 - g 77 -11.4 -3.3506 | overlap 2389129 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_2112 2389071 - 2389850 + | transposase/IS protein TERM 2637 2390115 - 2390089 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2390097, overlap 2390088 2390104 2390105 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGAA TGGCGCGGTTCG AGCCTACATGGATGT YPN_2113 2390429 - 2390530 + | hypothetical protein YPN_2114 2391722 - 2390712 - | putative SAM-dependent methyltransferase TERM 2638 2391629 - 2391643 + g 91 -4.2 -5.63517 | overlap 2391631 AGCAATGACGATTTC GGGGAT GCA ATCCGC TTTTTTCTTTGGGGA YPN_2115 2392010 - 2392270 + | hypothetical protein YPN_2116 2392419 - 2392261 - | hypothetical protein TERM 2639 2392436 - 2392414 - G 91 -9.1 -4.78848 | CTTGGAAATACAAAA GCCCATCCG TTCAT CTGATGGGC TCAGACTGCTGACAA TERM 2640 2392525 - 2392499 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 2392508, overlap 2392500 2392515 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2641 2392526 - 2392500 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 2392508, overlap 2392499 2392515 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2642 2392604 - 2392626 + r 100 -9.1 -4.93296 | TTGTCAATAACCTCA GCCCATCCG TTCAT CTGATGGGC TTTTTCTGGTGGTGA YPN_2117 2393611 - 2392652 - | hypothetical protein YPN_2118 2395092 - 2393677 - | O-succinylbenzoic acid--CoA ligase TERM 2643 2393936 - 2393924 - G 73 -3.3 -4.93661 | ACAGGAATAACAAAA GCGTG CTG CACCC CTGAATACTGCAATA YPN_2119 2396051 - 2395080 - | O-succinylbenzoate synthase YPN_2120 2396908 - 2396051 - | naphthoate synthase TERM 2644 2396348 - 2396371 + g 78 -2.3 -5.24129 | GGCATCATATTGGCG GCACAGGAA CCAAAT TTCCCGCGC TTTTTTCTGGCCGAC YPN_2121 2397740 - 2396922 - | acyl-CoA thioester hydrolase YfbB TERM 2645 2396985 - 2396970 - G 72 -4 -4.84359 | gap 1, overlap 2396972 TGACTGTGACAAAAA TGC-CAG CAC CTGTGCA GCAAAAGCACCGGGA YPN_2122 2399440 - 2397737 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YPN_2123 2401041 - 2399668 - | menaquinone-specific isochorismate synthase TERM 2646 2399813 - 2399847 + g 70 -9.2 -3.6502 | TGCTGCCCATCGACT CGCGCTGAACGCAGGG CCA CACTGAATTCAGTGCG TTTAAGTGACAAATA YPN_2124 2402207 - 2401563 - | hypothetical protein YPN_2125 2403070 - 2402762 - | hypothetical protein YPN_2126 2403254 - 2403421 + | hypothetical protein YPN_2127 2403595 - 2403777 + | hypothetical protein YPN_2128 2405867 - 2403996 - | phosphogluconate dehydratase TERM 2647 2404491 - 2404507 + g 71 -5.7 -4.4078 | AATAACCTGATGCTC CCGTGGC ACT GCCGAGG TTTTCATTACCGCCC TERM 2648 2404582 - 2404570 - G 73 -3.3 -4.91109 | CCCTGAGCAGAAAAA GGCTG TTC CAGAC TGGCGATCACCGTCG YPN_2129 2406392 - 2405877 - | hypothetical protein YPN_2130 2407738 - 2406422 - | sugar transporter TERM 2649 2406915 - 2406877 - G 89 -10.3 -4.40333 | gap 1, overlap 2406879 2406907 CGGAAATAACATAAA TACCGGCGGTGGTAGCCA CAAA TGGCAAC-ACCGCCAGAA TACCGACGGATGCCA TERM 2650 2406913 - 2406879 - G 85 -12.9 -3.79177 | gap 1, overlap 2406877 2406907 GAAATAACATAAATA CCGGCGGTGGTAGCCA CAAA TGGCAAC-ACCGCCAG AATACCGACGGATGC TERM 2651 2408025 - 2408054 + r 76 -10.8 -2.50195 | overlap 2408024 2408022 ATAATTTTCGATTGA CGCGTCAGATAA ACTTTA TTTTCTGACGCG CTATTACTCATGGAT TERM 2652 2408091 - 2408078 - R 70 -5.3 -4.50058 | CATGGATAACTAAAA TCACT AAAG AGTGA TTGAGGTTATTGACA TERM 2653 2408170 - 2408196 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2408159, overlap 2408165 2408171 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2654 2408171 - 2408197 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2408159, overlap 2408165 2408170 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_2131 2409234 - 2408284 - | D-isomer specific 2-hydroxyacid dehydrogenase family protein TERM 2655 2409470 - 2409453 - R 80 -2.7 -5.44721 | overlap 2409456 ACCATGTTAAAAAAA CATGTTA CCGG TAACGTG ACCAGTTTATCATTA TERM 2656 2409696 - 2409668 - R 73 -5.3 -4.72272 | opp_overlap 2409673, overlap 2409673 CGTGGTGATGAAAAA TAACAGGAAACCG AAT CGACTTCCCTTTA GTCTCAGATAGTCCC TERM 2657 2409691 - 2409673 - R 70 -7.4 -3.84027 | opp_overlap 2409673, overlap 2409668 TGATGAAAAATAACA GGAAACCG AAT CGACTTCC CTTTAGTCTCAGATA YPN_2132 2410692 - 2409700 - | LacI family transcriptional regulator TERM 2658 2410828 - 2410847 + H 80 -10.6 -3.5511 | overlap 2410827 CGGCAGTTACACCGT CGGGAGGG GATG CCCGCCCG TATTTCTCAATGGCA YPN_2133 2411161 - 2412444 + | putative lipoprotein TERM 2659 2413089 - 2413063 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2413072, overlap 2413064 2413079 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2660 2413090 - 2413064 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2413072, overlap 2413063 2413079 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPN_2134 2413098 - 2413967 + | gluconate 5-dehydrogenase TERM 2661 2414164 - 2414152 - g 100 -9.1 -5.1615 | overlap 2414154 CCAATATCCAAAAAA TGGCC GCC GGCCA GCCACTGAACGATCA YPN_2135 2414016 - 2414552 + | thermosensitive gluconokinase YPN_2136 2414630 - 2415097 + | hypothetical protein YPN_2137 2416655 - 2415465 - | hypothetical protein TERM 2662 2416844 - 2416817 - R 100 -14.2 -5.23292 | opp_overlap 2416812 CCAGATAAAACAAAA CCCCCTGTAAGC CGAT ACTCACAGGGGG TAGGGTCTATCTCGA YPN_2138 2418354 - 2416891 - | NADH dehydrogenase subunit N YPN_2139 2419893 - 2418361 - | NADH dehydrogenase subunit M TERM 2663 2419685 - 2419673 - G 70 -9.1 -3.61536 | AATCTAATGCCGAAA CGTGG GAT CCACG GCACATTATAATATG YPN_2140 2421777 - 2419933 - | NADH dehydrogenase subunit L TERM 2664 2420833 - 2420812 - G 72 -8.1 -3.87815 | gap 1 GCCCAGCGCCAGAAA CATGTAGCCA ATC TGGCT-CATG GTGGAGTACGCCAAC YPN_2141 2422076 - 2421774 - | NADH dehydrogenase subunit K YPN_2142 2422618 - 2422073 - | NADH dehydrogenase subunit J YPN_2143 2423173 - 2422631 - | NADH dehydrogenase subunit I YPN_2144 2424165 - 2423188 - | NADH dehydrogenase subunit H YPN_2145 2426906 - 2424162 - | NADH dehydrogenase subunit G TERM 2665 2425030 - 2425020 - G 70 -8.2 -3.67173 | opp_overlap 2425013, overlap 2425010 ATAAACCTGGAAGAA GCGC TGT GCGC GGCCTTCCTGATTGA YPN_2146 2428378 - 2426993 - | NADH dehydrogenase I subunit F TERM 2666 2428249 - 2428259 + g 86 -8.2 -4.7373 | ACGCTTTTTCTGCCC CGGC ATA GCCG TTTTTGCTGCGATAC YPN_2147 2428938 - 2428375 - | NADH dehydrogenase subunit E TERM 2667 2428911 - 2428923 + g 70 -3.3 -4.75372 | CAAGGCTTCCGTTAT GAGCC TGA GTCTC TTTTTGATCACTCAT YPN_2148 2430737 - 2428941 - | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 2668 2430640 - 2430630 - G 79 -8.2 -4.30719 | TGCTTGCACAACAAA GGCC TCT GGCC CAAAACGGTTCGACA YPN_2149 2431555 - 2430878 - | NADH dehydrogenase subunit B YPN_2150 2432157 - 2431657 - | NADH dehydrogenase subunit A TERM 2669 2432339 - 2432318 - R 74 -10.3 -2.57211 | overlap 2432317 ACTCCTTTCGATAAC CTTTTGTCA ACTT TGACAAAAG TAACTACACATTAAT TERM 2670 2432483 - 2432495 + r 70 -7.7 -3.65522 | ACTATACCATTGTCT CAGGA ATA TCCTG TTCTTCCACTCAGTA TERM 2671 2432496 - 2432520 + r 78 -2.2 -5.52384 | gap 1, overlap 2432498 CTCAGGAATATCCTG TTCT-TCCACT CAGT AGTGGACAGTA TTTTTTTGATCCAGG YPN_2151 2433767 - 2432835 - | LysR family transcriptional regulator TERM 2672 2435497 - 2435485 - g 80 -10.5 -3.6608 | overlap 2435463 AGCATGCGATTCAAA CCGCC TTG GGCGG CTATCAGAGCATTAG YPN_2152 2434623 - 2435837 + | aminotransferase AlaT YPN_2153 2435988 - 2436581 + | hypothetical protein TERM 2673 2436584 - 2436611 + T 100 -15.8 -3.28924 | TTCACTGGATTGATC TTTATAGCCTGC TTGT GCAGGCTATAAA TTATGACAAGAGATA TERM 2674 2436791 - 2436781 - T 71 -6.8 -4.15222 | ATTTTCGGCAAGAAA CTGC TCA GCAG TCATCGCATGAACAT YPN_2154 2438816 - 2436924 - | ion transport protein TERM 2675 2438984 - 2438968 - R 100 -9.4 -5.42131 | opp_overlap 2438967 TAACGATACAAAAAA GGTGCC GTCGA GGCACC CTACTATTGGCTTAT YPN_2155 2439704 - 2439048 - | putative phosphatase YPN_2156 2440363 - 2439869 - | hypothetical protein YPN_2157 2441126 - 2440671 - | hypothetical protein TERM 2676 2441012 - 2440993 - G 76 -7.8 -4.37534 | opp_overlap 2440992 2440993 AAACGGATACCAAAA CGGGTCAC TACC GTGACACG ATTCTCGGGGAACAC YPN_2158 2441548 - 2442750 + | acetate kinase TERM 2677 2443039 - 2443008 - g 72 -3.7 -4.7497 | overlap 2443010 TCCATGGAGCAAAAA GGGGTAAGCTTGA GCGTAT TCAAGCCTATCGC CCAGCCACGTGCGGG YPN_2159 2442918 - 2445071 + | phosphate acetyltransferase TERM 2678 2445163 - 2445189 + T 72 -10.1 -2.84602 | gap 1, opp_overlap 2445152, overlap 2445158 2445164 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCCCTGCC TERM 2679 2445164 - 2445190 + T 84 -10.1 -3.74872 | gap 1, opp_overlap 2445152, overlap 2445158 2445163 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCCCTGCCT TERM 2680 2445249 - 2445280 + T 79 -10.9 -3.05463 | opp_overlap 2445255, overlap 2445255 GGGTTTGTCAGCAGT CTGAAACGCCAGC CTCTGC GCTGGCGTTTTTG TTACATCAGACACGT TERM 2681 2445274 - 2445255 - T 84 -10.7 -3.58343 | opp_overlap 2445255 2445249 GTCAGCAGTCTGAAA CGCCAGC CTCTGC GCTGGCG TTTTTGTTACATCAG TERM 2682 2445255 - 2445274 + T 100 -10.7 -5.10461 | opp_overlap 2445255, overlap 2445249 GTCAGCAGTCTGAAA CGCCAGC CTCTGC GCTGGCG TTTTTGTTACATCAG TERM 2683 2445314 - 2445300 - T 75 -7.1 -4.26589 | opp_overlap 2445299 2445307 ATCAGACACGTAAAA CAGGG AGCCG CCCTG CATTCTGGGGCGGTT TERM 2684 2445307 - 2445327 + T 87 -8.2 -4.50358 | opp_overlap 2445300, overlap 2445299 ACGTAAAACAGGGAG CCGCCCTG CATTC TGGGGCGG TTTTCCTCTTTAGGT YPN_2160 2446371 - 2445337 - | LacI family transcriptional regulator TERM 2685 2445696 - 2445715 + g 81 -6.4 -4.93296 | overlap 2445690 TGGCCGCATCGGGCG TGGTGACC GTTT GGTCAGCA TTTTTGTAATGCTCG TERM 2686 2446647 - 2446613 - H 100 -15.2 -3.9712 | opp_overlap 2446637, overlap 2446631 2446632 TCATGGCATGACAAA TGATAGCGCTATCACA AAT TTTGATAGCGCTACCA GATAGCGCTATCAAT TERM 2687 2446663 - 2446631 - H 77 -8.5 -3.96624 | opp_overlap 2446637, overlap 2446613 2446632 TAGCGCTATCACAAA TTTTGATAGCGCTAC CAG ATAGCGCTATCAATT GAGATCCAGATCACA TERM 2688 2446662 - 2446632 - H 86 -12 -2.97653 | opp_overlap 2446637, overlap 2446613 2446631 AGCGCTATCACAAAT TTTGATAGCGCTAC CAG ATAGCGCTATCAAT TGAGATCCAGATCAC TERM 2689 2446637 - 2446657 + H 70 -9.8 -2.53876 | opp_overlap 2446613 2446632 2446631 TATCACAAATTTTGA TAGCGCTA CCAGA TAGCGCTA TCAATTGAGATCCAG YPN_2161 2446738 - 2447181 + | phosphotransferase enzyme II, A component YPN_2162 2447350 - 2447604 + | hypothetical protein TERM 2690 2447652 - 2447631 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_2163 2448288 - 2447626 - | transposase YPN_2164 2448835 - 2448305 - | transposase ulaA 2448975 - 2450231 + | ascorbate-specific PTS system enzyme IIC TERM 2691 2450262 - 2450279 + T 100 -12.7 -3.62572 | AAGACGTCACCATCA CCCCCTC CTTG GAGGGGG TTTAAACTGATAATA TERM 2692 2450324 - 2450300 - T 90 -5.7 -5.56673 | opp_overlap 2450300 ACTGATAATAAAAAA CCAAAGCGC TTTAGCG GGGCTTTGG TTTTTTTATTGAGCA TERM 2693 2450300 - 2450324 + T 100 -6.4 -5.7946 | opp_overlap 2450300 ACTGATAATAAAAAA CCAAAGCGCT TTAGC GGGGCTTTGG TTTTTTTATTGAGCA YPN_2166 2450896 - 2450348 - | hypothetical protein YPN_2167 2451705 - 2451118 - | phosphodiesterase TERM 2694 2451661 - 2451651 - G 71 -6.8 -4.15543 | overlap 2451653 CAAAGATCGCCAAAA CACG TTC CGTG GCCGGTAACGAACCA YPN_2168 2452585 - 2451893 - | hypothetical protein TERM 2695 2452719 - 2452731 + H 100 -4.1 -6.47325 | GTTGAGCGGTTTATT GAGTC CCT GATTC TTTTTTTTATTTTTT YPN_2169 2452939 - 2453847 + | hypothetical protein YPN_2170 2454768 - 2453971 - | histidine/lysine/arginine/ornithine transporter subunit YPN_2171 2455498 - 2454782 - | histidine transport system permease protein HisM TERM 2696 2455230 - 2455212 - G 83 -3.1 -5.42259 | CCACTGCGAAAAAAA GCATTGA GCAGA TCATTGC CTCGGATTATCTCCA YPN_2172 2456181 - 2455495 - | histidine transport system permease protein HisQ TERM 2697 2455807 - 2455795 - G 88 -10.5 -4.21922 | opp_overlap 2455795 2455792 GGAGGTAAAACCAAA GGCCG TCG CGGCC TCAATTTGCCCTTTA YPN_2173 2457066 - 2456284 - | histidine-binding periplasmic protein TERM 2698 2457427 - 2457398 - R 90 -7.1 -5.18995 | overlap 2457399 AACAGAATACAAAAA CCCTACTACAGCA CCAT CGCTGTTGCAGGA TCATTGTGGAGCATA TERM 2699 2457426 - 2457399 - R 73 -8.4 -3.68957 | overlap 2457398 ACAGAATACAAAAAC CCTACTACAGCA CCAT CGCTGTTGCAGG ATCATTGTGGAGCAT YPN_2174 2458163 - 2457591 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 2700 2458332 - 2458303 - R 90 -7.2 -5.15167 | gap 2, opp_overlap 2458303 CACCATGAATAAAAA GGTGC-ACC-GCGC CTAA ACGCAGGTTGCACC TTTTTGGCTCATTCT TERM 2701 2458303 - 2458332 + r 77 -6.5 -4.71382 | gap 2, opp_overlap 2458303 CACCATGAATAAAAA GGTGCA-CC-GCG CCTAAA CGCAGGTTGCACC TTTTTGGCTCATTCT TERM 2702 2458352 - 2458371 + r 76 -10.8 -2.57344 | overlap 2458351 2458354 TGGCTCATTCTGTTT TATGACGG ATAC CCGTCATA CTTCTACCCGCCATA YPN_2175 2459927 - 2458410 - | amidophosphoribosyltransferase YPN_2176 2460449 - 2459940 - | colicin V production protein TERM 2703 2460258 - 2460248 - G 79 -6.8 -4.71426 | opp_overlap 2460247 TCGCGATGAACAAAA TGCC GAT GGCA ATTCCGTTGCGAACA YPN_2177 2461483 - 2460761 - | hypothetical protein TERM 2704 2461003 - 2461015 + g 80 -4.7 -5.06414 | opp_overlap 2460999, overlap 2461002 GGACAACATAAGCCT GCCCC ACT GGCGC TTTTTCTTCCACCGG TERM 2705 2461060 - 2461081 + g 79 -5.1 -5.05113 | GCTTAGGTTTCACTT CCAGCGG TTTTTTCT CTGCTGG TTTTGTTTCTATCGG YPN_2178 2462907 - 2461603 - | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase TERM 2706 2462883 - 2462859 - G 90 -13.5 -3.93262 | opp_overlap 2462851 2462846 GCTCAAGATAGCAAA GCCACGCGGCC AAA GGCGACGTGGC TTGGGGAGTTTGATG TERM 2707 2463146 - 2463118 - R 76 -10.4 -2.90804 | gap 1, opp_overlap 2463118, overlap 2463117 ATAAGGCACAATAAC CGGGCACCA-TCT TACA AGAGTGATGCCCG TTGAGTTAATCAGAC YPN_2179 2464070 - 2463156 - | acetyl-CoA carboxylase subunit beta TERM 2708 2464191 - 2464155 - R 78 -2.2 -5.4505 | gap 1, overlap 2464166 2464168 CTCTCCAATAAAAAA TGCCTGAGATACA-CGC CAGT GCGACGTGGCTAAGGCA CCGAAACTTGGATTG YPN_2180 2464963 - 2464301 - | hypothetical protein TERM 2709 2465165 - 2465144 - R 73 -5.1 -4.58395 | overlap 2465150 GTCATCCGCCAAAAA CAAAGGCCC CATA GGAACTTTG GGTAACGCGAAGTGG truA 2466001 - 2465120 - | tRNA pseudouridine synthase A TERM 2710 2465916 - 2465932 + g 91 -6.5 -5.1356 | opp_overlap 2465916 AACGCAATTTTCAAA CCGGC CACTTCT GCCGG TTTTTCTTGCTGAGC YPN_2182 2467011 - 2466001 - | putative semialdehyde dehydrogenase TERM 2711 2466137 - 2466173 + g 71 -10.7 -3.11459 | opp_overlap 2466135 2466137 CGAACGCAACCAATA CTCAGGGCATCGCTGCC GGA GGCGTCGCTGACCTGGG TTGGATAATCATCTT TERM 2712 2467119 - 2467141 + r 80 -9.1 -4.0257 | opp_overlap 2467121, overlap 2467111 2467121 ACGTTATTGAACAGC AAGGGCGGT AACAC ACCGCCCTG TTATTAATTTTTACG TERM 2713 2467121 - 2467139 + r 90 -11.7 -3.58785 | opp_overlap 2467121, overlap 2467119 2467111 GTTATTGAACAGCAA GGGCGGT AACAC ACCGCCC TGTTATTAATTTTTA TERM 2714 2467139 - 2467121 - R 95 -12.4 -3.38072 | opp_overlap 2467119 2467111 2467121 GTTATTGAACAGCAA GGGCGGTA ACA CACCGCCC TGTTATTAATTTTTA YPN_2183 2468368 - 2467181 - | erythronate-4-phosphate dehydrogenase YPN_2184 2469140 - 2468355 - | AraC family transcription regulator YPN_2185 2469366 - 2470283 + | hypothetical protein YPN_2186 2470568 - 2471605 + | flagella biosynthesis regulator TERM 2715 2471707 - 2471678 - T 93 -10.9 -4.22132 | opp_overlap 2471684, overlap 2471684 TTAAATACAAAAATA CAAAAAGCGACTA ATAT CAGTCGCTTTTTA ACAAACCGCTTACGC TERM 2716 2471684 - 2471701 + T 76 -7 -4.56597 | opp_overlap 2471678 2471684 ACAAAAATACAAAAA GCGACT AATATC AGTCGC TTTTTAACAAACCGC TERM 2717 2471701 - 2471684 - T 100 -7.7 -5.38398 | opp_overlap 2471684, overlap 2471678 ACAAAAATACAAAAA GCGACTA ATAT CAGTCGC TTTTTAACAAACCGC TERM 2718 2471921 - 2471875 - T 75 -10.5 -2.87564 | gap 1, opp_overlap 2471887 2471908 2471914, overlap 2471861 2471887 TCATTCTTTTATACA GCATATAAAAAAGCATGCAGAA TATC TTCCACATGCTTTTTT-TAAGC AATTTAGACAGCTTA TERM 2719 2471887 - 2471910 + T 84 -3.8 -5.41746 | opp_overlap 2471861 2471875 2471887, overlap 2471908 ACAGCATATAAAAAA GCATGCAGAA TATC TTCCACATGC TTTTTTTAAGCAATT TERM 2720 2471910 - 2471887 - T 100 -8.2 -5.40625 | opp_overlap 2471887 2471908, overlap 2471861 2471875 ACAGCATATAAAAAA GCATGCAGAA TATC TTCCACATGC TTTTTTTAAGCAATT YPN_2187 2472477 - 2471947 - | hypothetical protein TERM 2721 2473191 - 2473230 + H 72 -9.2 -3.14344 | gap 1 TCACTTATAACGTGG GGGC-GCTGTCGCCCTTCA AGA TGCAGGGAGTTAGCTGCCC TTGCTCACCCCAGTC YPN_2188 2473265 - 2473960 + | aspartate/glutamate racemase TERM 2722 2474133 - 2474114 - T 100 -12.2 -5.24003 | AATAAAAAGTAAAAA GCCTACGA TCTC TCGTAGGC TTCAGACTGCTGACA TERM 2723 2474223 - 2474197 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2474206, overlap 2474198 2474213 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2724 2474224 - 2474198 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2474206, overlap 2474197 2474213 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2725 2474328 - 2474297 - T 90 -11.6 -3.62046 | opp_overlap 2474303 GCACTTTGTCAATAA CCTCAAGCCTACGA TCTC TCGTAGGCTTTGGG GAGTAAATCTGAATC TERM 2726 2474303 - 2474322 + T 91 -12.2 -3.55761 | opp_overlap 2474297 TGTCAATAACCTCAA GCCTACGA TCTC TCGTAGGC TTTGGGGAGTAAATC YPN_2189 2475591 - 2474368 - | 3-oxoacyl-(acyl carrier protein) synthase I TERM 2727 2477051 - 2477037 - g 76 -5.7 -4.65916 | GCTAGCGCAACAAAA TGGCA TGACC TGCCA CTACCAACATGAACT mnmC 2475763 - 2477832 + | 5-methylaminomethyl-2-thiouridine methyltransferase YPN_2191 2478288 - 2478010 - | hypothetical protein YPN_2192 2478888 - 2478346 - | hypothetical protein TERM 2728 2478766 - 2478753 - G 82 -6.7 -4.77438 | overlap 2478756 AGCCATGAGCAAAAA TCACC CGAT GGTGA GGAGATTCTTCATCG TERM 2729 2478942 - 2478914 - R 82 -10.3 -3.66883 | GTAAGAGAGGGTAAA CACCGCTAAAGTC ACC GTATTTAGCGGTG GTGGGTGCCTAAATT YPN_2193 2479794 - 2478988 - | hypothetical protein TERM 2730 2479710 - 2479680 - G 74 -11.1 -3.04263 | gap 1, overlap 2479699 ATCCCACCGCTAACA GTGCGGGGACGGTT AACA AGCCGCCCCCGC-C GGCAATGGAATCAAT mepA 2480586 - 2479798 - | penicillin-insensitive murein endopeptidase TERM 2731 2480499 - 2480477 - G 70 -9.1 -3.57462 | GACTCGAGCGGCAAA GGCTGCGCG CCAAT CACGCAACC ATTAGCAAAGCCACC YPN_2195 2481716 - 2480631 - | chorismate synthase YPN_2196 2482725 - 2481793 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YPN_2197 2483014 - 2483625 + | hypothetical protein TERM 2732 2484022 - 2484003 - T 100 -15 -3.8579 | AGCCAATAAGCGAAA GCGCGGCA AGAA TGCCGCGC CAGTTAGACGTTGAT YPN_2199 2484582 - 2484091 - | phosphohistidine phosphatase fadJ 2487475 - 2485151 - | multifunctional fatty acid oxidation complex subunit alpha TERM 2733 2485909 - 2485926 + g 71 -7 -4.21827 | AGAACCCAGCGCGAT CAGCCA CCACAA TGGCTG TTTTACCCTGTTTCC TERM 2734 2486076 - 2486051 - G 71 -11.2 -2.78813 | overlap 2486036 2486034 2486050 2486074 GTGCAGGCCAATAAC CTGCTCTGGC CGTTGC GCCAAAGCAG CAATCTGGCTGATGG TERM 2735 2486726 - 2486697 - G 71 -5.1 -4.47456 | gap 1, overlap 2486699 ATACGGAATAATAAA GC-TTTACCCAACG GCC CACTGAGTAAACGC TCCTGCCATGGTAAT fadI 2488785 - 2487475 - | 3-ketoacyl-CoA thiolase TERM 2736 2487708 - 2487737 + g 75 -9.3 -3.85698 | opp_overlap 2487707 2487705 CGCGAGCAAAAGTAT CACTGGCAAACAT TTTC AGGTTAGCCAGTG TTTGTGCGGCGAAGG TERM 2737 2488849 - 2488837 - R 79 -7.7 -4.34559 | AAAGATAACAAATAA CAGGT CTG ACCTG ATCCGAACATTGTTA TERM 2738 2489035 - 2489015 - R 100 -12.6 -3.90425 | opp_overlap 2489015 CATCTAAAGTAATAA CGCGAAGC AAAAG GCTTCGCG TTGGTCAGGTATGTA TERM 2739 2489015 - 2489035 + r 93 -12.6 -3.18239 | opp_overlap 2489015 CATCTAAAGTAATAA CGCGAAGC AAAAG GCTTCGCG TTGGTCAGGTATGTA YPN_2202 2489368 - 2489072 - | hypothetical protein YPN_2203 2489782 - 2491047 + | long-chain fatty acid outer membrane transporter TERM 2740 2491075 - 2491102 + T 100 -17.2 -4.18018 | opp_overlap 2491075 2491077 2491082, overlap 2491082 CATCACCTTATCCAA TAGAAAAGCGCC TGAT GGCGCTTTTCTA TTTTGAATACGGCGG TERM 2741 2491102 - 2491075 - T 100 -17.2 -3.07113 | opp_overlap 2491075 2491082, overlap 2491077 2491082 CATCACCTTATCCAA TAGAAAAGCGCC TGAT GGCGCTTTTCTA TTTTGAATACGGCGG TERM 2742 2491100 - 2491077 - T 100 -15.4 -3.09327 | opp_overlap 2491075 2491082, overlap 2491075 2491082 TCACCTTATCCAATA GAAAAGCGCC TGAT GGCGCTTTTC TATTTTGAATACGGC TERM 2743 2491095 - 2491082 - T 100 -9.5 -4.68724 | opp_overlap 2491082 2491075, overlap 2491077 2491075 TTATCCAATAGAAAA GCGCC TGAT GGCGC TTTTCTATTTTGAAT TERM 2744 2491082 - 2491095 + T 100 -9.5 -4.90471 | opp_overlap 2491077 2491075 2491082, overlap 2491075 TTATCCAATAGAAAA GCGCC TGAT GGCGC TTTTCTATTTTGAAT YPN_2204 2491918 - 2491154 - | VacJ lipoprotein TERM 2745 2491944 - 2491961 + r 78 -5.6 -4.88895 | ATGAAAGTCTGTCTA TCCCTT TCACTT AAGGGA TTTGTTTATTTATTT YPN_2205 2493180 - 2491954 - | cytochrome c-type biogenesis protein YPN_2206 2493857 - 2493180 - | cytochrome c-type biogenesis protein YPN_2207 2494254 - 2493535 - | thiol:disulfide interchange protein DsbE YPN_2208 2496221 - 2494251 - | cytochrome c-type biogenesis protein TERM 2746 2495204 - 2495222 + g 74 -8.1 -4.09685 | gap 1 CTTCATGCTGAGTCC GGCTGCGC ACCT GCGC-GCC TTTTACCGCATACAG YPN_2209 2496712 - 2496218 - | cytochrome c-type biogenesis protein CcmE YPN_2210 2497011 - 2496709 - | heme exporter protein D TERM 2747 2496969 - 2496958 - G 76 -5.8 -4.61868 | overlap 2496960 GAGCCAGACATAAAA GGCA TAGT TGCC CATGGCAAAAAATTC YPN_2211 2497745 - 2497008 - | heme exporter protein C YPN_2212 2498467 - 2497808 - | heme exporter protein B YPN_2213 2499093 - 2498437 - | cytochrome c biogenesis protein CcmA TERM 2748 2499064 - 2499050 - GR 73 -5.6 -4.42464 | overlap 2499052 AACTGCTGAAATAAA CAGCGA TCA TCGCGG ATACAGGTCAGATTT YPN_2214 2500005 - 2499538 - | hypothetical protein TERM 2749 2500293 - 2500307 + H 74 -7.8 -3.91364 | opp_overlap 2500290 2500293 TCGAACCAGTAACTA GCCCTT AGG AGGGGC TTGTTATATCCGTTT YPN_2215 2500621 - 2501163 + | hypothetical protein TERM 2750 2502253 - 2502235 - gf 70 -2.4 -5.04265 | AAAAAAGAGTAAAAA CAAAAGCC CAT GGGTTTTA AACAGCCGCGATGAA YPN_2216 2501108 - 2503207 + | membrane protein TERM 2751 2503295 - 2503318 + F 90 -2.4 -5.94214 | gap 1 GGTATCAGTTCGATG TGT-CCGTCAC TCG GTGTTGGGACA TTTTTTTATTCTATT TERM 2752 2503516 - 2503500 - f 75 -2.3 -5.38326 | TTAATTAAATAAAAA GTGTA AAATGCA TACAC ATCAATACAGTAACC YPN_2217 2503583 - 2503924 + | hypothetical protein TERM 2753 2503934 - 2503962 + T 78 -8.9 -3.83921 | opp_overlap 2503933 2503934 AGCTAATGCATTAAT GGGTTCTTTGC CACCCAA GCAGAGAGCCC TTCTATTATCTTGGA YPN_2218 2504364 - 2503999 - | membrane protein YPN_2219 2504850 - 2504371 - | hypothetical protein TERM 2754 2504824 - 2504835 + g 89 -2.2 -5.80951 | overlap 2504826 ACGCTCTAACAACGC CGGT AAAA ACTG TTTTTTCTTTTCCAT YPN_2220 2505785 - 2504979 - | hypothetical protein YPN_2221 2506653 - 2505805 - | hypothetical protein TERM 2755 2506958 - 2506992 + r 89 -11.4 -3.44377 | opp_overlap 2506956 2506954 2506952 2506950, overlap 2506957 GAAAAATCAGAGACC GCATGCTCTACGTGTG TTT CCCACGCAGAACATGC TTACCTTTTATCTAT YPN_2222 2509615 - 2507012 - | hypothetical protein TERM 2756 2507111 - 2507121 + g 72 -8.2 -3.9122 | overlap 2507097 2507114 CGGTGCCGTGGTTTC CGGC GGT GCCG TTGTTTCCGGCGGTG TERM 2757 2507114 - 2507139 + g 75 -8.9 -3.9122 | overlap 2507097 2507111 2507132 TGCCGTGGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2758 2507132 - 2507157 + g 75 -8.9 -3.9122 | overlap 2507114 2507150 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2759 2507150 - 2507175 + g 75 -8.9 -3.9122 | overlap 2507132 2507168 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 2760 2507168 - 2507193 + g 77 -8.9 -4.07133 | overlap 2507150 2507186 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCTGGCGGTG TERM 2761 2508052 - 2508039 - G 70 -8.1 -3.65351 | TTATTTTTAGTCAAA CGCGA CATA TCGCG CTCGGCCTGTTCCCA YPN_2223 2513736 - 2509909 - | membrane protein TERM 2762 2510129 - 2510143 + g 72 -10 -3.36492 | opp_overlap 2510127 CGAAAAAGAATATCG GGCATC GCG GATGCC TTCTGGCGTTGGGCC TERM 2763 2510608 - 2510619 + g 70 -4.4 -4.69559 | AATCGCTTTGGACGT GTGA GTAA TCAC TTTATTTTCAAATTT TERM 2764 2510937 - 2510964 + g 79 -5.6 -5.05782 | overlap 2510943 CTTTAATCAGTTTAT TTTCACGAAACG CGAT CGTTTCTTGTAA TTTTTTAGCCTGGCT TERM 2765 2511972 - 2512007 + g 71 -7 -4.14739 | gap 1, opp_overlap 2511983 GTAACTGCTGTGTCG CGTTCAATAACGCAGGT AAG ATCTGC-TCATTGGACG TTTTGGCATAACTCA TERM 2766 2513336 - 2513350 + g 73 -6.4 -4.58663 | opp_overlap 2513336 TGCTTAATGAAGTTA TCCAGT AAC GCTGGA TTTTTCGCCAATGCT TERM 2767 2513537 - 2513527 - G 74 -8.2 -4.05446 | overlap 2513528 GGCGGCAATGACAAA GCGC GGT GCGC CGTACCAAAAACCTA YPN_2224 2514581 - 2513745 - | OmpA family protein YPN_2225 2515376 - 2514597 - | transposase/IS protein TERM 2768 2515295 - 2515309 + g 77 -11.4 -3.3506 | overlap 2515308 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_2226 2516398 - 2515376 - | transposase for insertion sequence IS100 TERM 2769 2516420 - 2516402 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_2227 2517077 - 2517301 + | hypothetical protein YPN_2228 2517652 - 2517311 - | ABC-type sugar transport systems, ATPase components YPN_2229 2518428 - 2517538 - | binding-protein-dependent transport system, ATP-binding component YPN_2230 2519280 - 2518453 - | binding-protein-dependent transport system, inner membrane component TERM 2770 2518661 - 2518644 - G 70 -8.5 -3.80174 | AGAGCGTTAGAACAA TCTGGAA TTCG TTCCAGA TAAAGAACAGTGTCA YPN_2231 2520133 - 2519273 - | binding-protein-dependent transport system, inner membrane component TERM 2771 2520199 - 2520159 - R 70 -7.7 -3.6279 | gap 1, overlap 2520160 AAACCTGCGTAAGAA TTTCATTTCCGTCAGTGC GCAACT GCACTGACGGAAA-GCGA TTAACGGGACAACGC TERM 2772 2520200 - 2520160 - R 72 -9.9 -2.77192 | gap 1, overlap 2520159 AACCTGCGTAAGAAT TTCA-TTTCCGTCAGTGC GCAACT GCACTGACGGAAAGCGAT TAACGGGACAACGCT YPN_2232 2521468 - 2520200 - | exported solute-binding protein YPN_2233 2522511 - 2521498 - | oxidoreductase TERM 2773 2522749 - 2522715 - g 95 -15.3 -3.88232 | gap 1, overlap 2522741 2522744 TCGTTTACAGAACAA TGATGGTGCTCTTGAG CAAA CTCAA-AGCACCATCA CGGTGCGTAAGGTTC YPN_2234 2522650 - 2522865 + | hypothetical protein YPN_2235 2523970 - 2523173 - | GntR family putative transcriptional regulatory protein YPN_2236 2523987 - 2524148 + | hypothetical protein YPN_2237 2524521 - 2524315 - | hypothetical protein YPN_2238 2524939 - 2525373 + | hypothetical protein YPN_2239 2525385 - 2525954 + | hypothetical protein TERM 2774 2526046 - 2526075 + T 86 -11.7 -3.31428 | gap 1, overlap 2526042 2526045 2526043 CAAACAGGTACTCAG TAGCTCTGATT-AG TAA CTCAATCAGAGCTA TCTATTGTATTTAAA TERM 2775 2526398 - 2526377 - T 84 -10.1 -3.74693 | CGCCACTGTATTAAA GGTGATCGC TCAG GCGGTCACC AAACTCGATAATAAA YPN_2240 2526710 - 2526372 - | transposase YPN_2241 2527570 - 2526710 - | hypothetical protein YPN_2242 2528694 - 2527618 - | hypothetical protein TERM 2776 2528640 - 2528670 + g 71 -11.2 -2.72511 | overlap 2528639 CACTTTCCTTATATT GTTCCCGAATTCTT TGT AAGTATCCGGGAAC CTTTGGGGGGATGCA YPN_2243 2529050 - 2528760 - | hypothetical protein YPN_2244 2529303 - 2529031 - | hypothetical protein TERM 2777 2529583 - 2529599 + G 85 -7.2 -4.8048 | overlap 2529579 AATTGGTTAACCCTG CGCGCC GGGCG GGTGCG TTTTTGGTCTGCGCC YPN_2245 2529334 - 2529693 + | hypothetical protein YPN_2246 2529690 - 2529989 + | hypothetical protein YPN_2247 2530006 - 2530293 + | hypothetical protein YPN_2248 2530940 - 2531245 + | hypothetical protein TERM 2778 2531526 - 2531558 + F 71 -10 -2.62614 | overlap 2531525 2531542 2531546 CACTTTCCTGTTAAT GGTAACCACTCTAT ATCGC GTAAAGTGGTTACC CGTTTTATAGTTTTC YPN_2249 2531669 - 2531809 + | major tail sheath protein TERM 2779 2532134 - 2532124 - g 76 -4.6 -5.0133 | TACTGCCGTAAAAAA GGGC TTT ACCC CGCGCAGATAGCGCA YPN_2250 2531920 - 2532339 + | hypothetical protein YPN_2251 2532411 - 2533370 + | transposase YPN_2252 2533590 - 2533934 + | hypothetical protein YPN_2253 2533960 - 2534139 + | hypothetical protein YPN_2254 2534716 - 2534543 - | hypothetical protein TERM 2780 2534875 - 2534858 - R 75 -3.3 -5.12172 | TAGCAATAAATAAAA CGTAAGG CGTT CCCGACG GGTGGCTCAGTACAT YPN_2255 2535703 - 2535476 - | replicative DNA helicase YPN_2256 2535772 - 2536329 + | hypothetical protein TERM 2781 2536580 - 2536567 - T 100 -9.5 -5.69473 | TAGATCACAAAAAAA CCGCC TCTC GGCGG TTAACGACATACTCG TERM 2782 2536667 - 2536687 + T 76 -10.5 -2.90714 | opp_overlap 2536666, overlap 2536670 CGCACAGCCATAAGC CGAGGGATT TTA AATCCCTTG TGTCTACCGATTTCA TERM 2783 2536670 - 2536684 + T 73 -8.6 -3.5947 | opp_overlap 2536666, overlap 2536667 ACAGCCATAAGCCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 2784 2536882 - 2536898 + T 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA YPN_2257 2537617 - 2537069 - | phosphatidylglycerophosphate synthetase uvrC 2539529 - 2537676 - | excinuclease ABC subunit C YPN_2259 2540157 - 2539501 - | response regulator TERM 2785 2539959 - 2539946 - GH 71 -5.3 -4.57569 | opp_overlap 2539946 2539944, overlap 2539954 GTATCCGGCGAAAAA CGTAA AATT TTACG TGTTGCTTCCAACCC TERM 2786 2540417 - 2540407 - H 78 -4 -5.14477 | CATACATTCAAAAAA CTAA TTA TTAG CATTAGATAAGTTAA YPN_2260 2540820 - 2541044 + | hypothetical protein YPN_2261 2541169 - 2541513 + | membrane protein YPN_2262 2541795 - 2541541 - | hypothetical protein TERM 2787 2542109 - 2542083 - R 85 -5.9 -5.18357 | gap 1 CAACTGATGAAAAAA CAGCCGCA-CAG TGAA CTAATACGGCTG TTATTATTATATAGA YPN_2263 2542686 - 2542135 - | attachment invasion locus protein TERM 2788 2545044 - 2545055 + G 70 -2.2 -5.00895 | opp_overlap 2545033 AATCCATCTACAAAA TGCC AGCC GGTA TTTTTATGTCATGGG TERM 2789 2545078 - 2545090 + G 76 -6.2 -4.73614 | GTCATGGGTTTGTAT GGCG TTTTT CGCC TTTGTTTTGGTACTG YPN_2264 2543801 - 2545225 + | D-alanine/D-serine/glycine permease TERM 2790 2545237 - 2545271 + T 100 -17.4 -3.59738 | opp_overlap 2545242, overlap 2545242 ATAACCACAGTGTGA TAAAACGGTGCCAGAG GTG TTCTGGTACCGTTTTA TTTCCCCCTCTAATC TERM 2791 2545266 - 2545242 - T 93 -10 -4.39426 | opp_overlap 2545242 2545237 CACAGTGTGATAAAA CGGTGCCAGA GGTGT TCTGGTACCG TTTTATTTCCCCCTC TERM 2792 2545242 - 2545266 + T 100 -12.9 -4.87803 | opp_overlap 2545242, overlap 2545237 CACAGTGTGATAAAA CGGTGCCAGAG GTG TTCTGGTACCG TTTTATTTCCCCCTC YPN_2265 2546529 - 2545351 - | hypothetical protein TERM 2793 2546845 - 2546890 + H 80 -9.9 -3.69684 | gap 1, opp_overlap 2546853 TGCTGATTAGCTTAT GGTTAATAGGTGTCATTAGCCG CGA CGACTAATGACATC-ATCAGCC TTATTCAATAAATTT TERM 2794 2546883 - 2546853 - H 100 -13.4 -3.04263 | opp_overlap 2546845 AGCTTATGGTTAATA GGTGTCATTAGCCG CGA CGACTAATGACATC ATCAGCCTTATTCAA YPN_2266 2546923 - 2547522 + | TrpR binding protein WrbA TERM 2795 2547601 - 2547579 - T 91 -7.7 -4.8667 | opp_overlap 2547577 2547575 2547579 TAGACGTCATAAAAA GCACCGC GCGATGATG GCGGTGC TGTATTTTAAGCTTC YPN_2267 2548912 - 2547608 - | hypothetical protein TERM 2796 2548094 - 2548109 + g 77 -9 -4.00042 | TCCCCCTACCGCCCA TGCAGG CTCG CCTGCA TTATTTGATACCCAG TERM 2797 2548854 - 2548839 - G 74 -7.5 -4.20136 | overlap 2548840 ATCCCTAAAATTAAA CGCCG ACGTGA CGGCG ACACCGCCTCATCAT TERM 2798 2548879 - 2548899 + g 100 -12.5 -4.63586 | overlap 2548869 2548880 CATCATCCGGTTGAT ACGGCCCGA ATT TCGGGCCGG TTTTGTCTCTCATGT TERM 2799 2548880 - 2548898 + g 100 -16 -3.37067 | overlap 2548869 2548879 ATCATCCGGTTGATA CGGCCCGA ATT TCGGGCCG GTTTTGTCTCTCATG YPN_2268 2550053 - 2548923 - | hypothetical protein TERM 2800 2549563 - 2549585 + g 74 -8.4 -4.08485 | AGTGCCAGATCCCCA GCCTTCACTG CAT CGGTGAACGC TTTGGTTTGGCTGAC YPN_2269 2550931 - 2550083 - | membrane protein TERM 2801 2551224 - 2551195 - R 73 -8.6 -3.59698 | opp_overlap 2551197 2551199, overlap 2551197 TGATTTTACATACAA GATAGCCCCCTG TTATGG CAGGAGGCTATG TGTAGTTAAACGTAT TERM 2802 2551197 - 2551222 + r 73 -9.7 -3.00476 | opp_overlap 2551197 2551195, overlap 2551199 ATTTTACATACAAGA TAGCCCCCTGT TATG GCAGGAGGCTA TGTGTAGTTAAACGT TERM 2803 2551222 - 2551197 - R 81 -11.2 -3.37466 | opp_overlap 2551197 2551199, overlap 2551195 ATTTTACATACAAGA TAGCCCCCTG TTATGG CAGGAGGCTA TGTGTAGTTAAACGT YPN_2270 2552748 - 2551264 - | proline permease TERM 2804 2551367 - 2551353 - G 76 -4.2 -4.91109 | overlap 2551355 GGCTGACGACAAAAA TAGCCA AAC TGGCAA ACAAGAAGCCTGGAA YPN_2271 2552975 - 2552778 - | hypothetical protein TERM 2805 2553752 - 2553741 - g 78 -2.2 -5.26875 | gap 1, overlap 2553742 TGCGTAATCAAAAAA GTGCC CAT GGC-C GCGCGGGCATGGTAC TERM 2806 2555546 - 2555569 + G 70 -9.6 -3.28745 | opp_overlap 2555527, overlap 2555549 AGTAATGCCATCGCC GAAGTCCGTG AAGC CGTGGACTTC TTGCATTATTACGCC putA 2553320 - 2557291 + | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 2807 2557364 - 2557377 + F 83 -9.5 -4.07568 | opp_overlap 2557364 CGGTTTATCAATTAA GGCCC TTCG GGGCC TTTTGCCAACCAACA TERM 2808 2557377 - 2557364 - f 74 -9.5 -3.39895 | opp_overlap 2557364 CGGTTTATCAATTAA GGCCC TTCG GGGCC TTTTGCCAACCAACA YPN_2273 2557755 - 2558090 + | hypothetical protein YPN_2274 2558090 - 2558461 + | hypothetical protein TERM 2809 2558500 - 2558476 - T 100 -12.2 -3.78312 | opp_overlap 2558474 AAATTATCTAGCAAA TTGGGGACCA TACCG TGGCCCCCAA CATATTAAAAATGCC TERM 2810 2558596 - 2558582 - T 100 -10 -4.72272 | opp_overlap 2558576 TTTTGCCACCAAAAA CCACTG AAT CAGTGG TTGAGGTTATTGACA TERM 2811 2558675 - 2558701 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 2558664, overlap 2558670 2558676 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2812 2558676 - 2558702 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 2558664, overlap 2558670 2558675 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_2275 2559514 - 2558753 - | putative amino-acid ABC transporter ATP-binding protein YecC YPN_2276 2560179 - 2559517 - | amino-acid ABC transporter (permease) TERM 2813 2560160 - 2560141 - G 100 -12.2 -5.06816 | opp_overlap 2560140 ACCCTTCAATAAAAA TGGTGCTG AATC CAGCACCA ATTGCATACTTTCTG YPN_2277 2560979 - 2560179 - | cystine transporter subunit YPN_2278 2562095 - 2561103 - | D-cysteine desulfhydrase YPN_2279 2562893 - 2562384 - | protein FliZ TERM 2814 2562856 - 2562869 + g 95 -5.9 -5.47218 | opp_overlap 2562856 TAATCTTTTAAATAA CGGCT CAGC GGCCG TTTTTTTAACTGGAG fliA 2563837 - 2563115 - | flagellar biosynthesis sigma factor TERM 2815 2564009 - 2564019 + r 81 -5.4 -5.10064 | CCTTGAAGTGCATTC TCAG CGT CTGA TTTTTATCTGTTCCC TERM 2816 2564155 - 2564140 - R 91 -8.2 -4.69027 | overlap 2564130 AAACTGAGGTAAAAA CCCCGC CGCA GCAGGG TTGGAATAAGGGTAT YPN_2281 2565293 - 2564184 - | flagellin fliD 2565590 - 2566990 + | flagellar capping protein TERM 2817 2567101 - 2567115 + G 76 -12.8 -2.71144 | opp_overlap 2567110, overlap 2567101 TGATGCTGTTCGATG GGGCGC AAA GCGCCC TGATTCGCGCACGTA fliS 2567001 - 2567399 + | flagellar protein FliS YPN_2284 2567410 - 2567772 + | flagellar biosynthesis protein FliT TERM 2818 2567981 - 2567994 + F 82 -3.1 -5.46657 | TTATAGTCGAAGTGG CTTGC TATG GTAAG TTTTTTATTAAAATA YPN_2285 2568073 - 2568948 + | AraC family transcription regulator YPN_2286 2569253 - 2569089 - | hypothetical protein TERM 2819 2569114 - 2569125 + g 71 -5.8 -4.40561 | opp_overlap 2569123 CTTTTAGATATTTTG CGCT TTAA AGCG TTCTTTTTAAGGCCG TERM 2820 2569648 - 2569660 + G 100 -4.7 -5.80817 | overlap 2569649 CCGTATACAGCGCTT ACCCC AAT GGGGA TTTTTTTATGTTGCG TERM 2821 2569649 - 2569659 + G 74 -8.2 -4.06863 | overlap 2569648 CGTATACAGCGCTTA CCCC AAT GGGG ATTTTTTTATGTTGC TERM 2822 2570038 - 2570027 - g 70 -2.2 -4.90778 | opp_overlap 2570032, overlap 2570028 2570031 TTTAGCTAAACAAAA CCTA CCAC CAGG CAGCCAGGCGATTAT TERM 2823 2570765 - 2570784 + G 72 -3.6 -4.79223 | overlap 2570768 GCCATCGTTGCAGGT TAATGAAG ATAA CTTCAATA TTTTTAATCCTGTAC TERM 2824 2571176 - 2571163 - g 100 -6.7 -5.38549 | CTGAAATAACAAAAA TGCTC GCCA GAGCA GCGATGGAGAGTAAA YPN_2287 2569302 - 2571215 + | hypothetical protein YPN_2288 2571352 - 2572257 + | hypothetical protein YPN_2289 2572418 - 2573029 + | glycosidase TERM 2825 2573195 - 2573180 - T 80 -6.1 -4.8066 | opp_overlap 2573180 AAGATAACGCAAAAA CCCAC AGCTAA GTGGG TTGATATCTCATACG YPN_2290 2573691 - 2573215 - | hypothetical protein YPN_2291 2573881 - 2573702 - | hypothetical protein fliE 2574612 - 2574301 - | flagellar hook-basal body protein FliE TERM 2826 2574518 - 2574536 + g 70 -4.5 -4.72272 | gap 1, overlap 2574515 2574518 AGTTCACTGGCGAAG CCC-GCCT CTGC GGGCAGGG TTTTTGCTGACCCCG TERM 2827 2575101 - 2575119 + G 77 -11 -3.3573 | overlap 2575090 TTGTCGCCTTGATGC TCTGGGCT AAA AGCCCGGA TTATCGCGTCCTTTA fliF 2574965 - 2576677 + | flagellar MS-ring protein fliG 2576674 - 2577666 + | flagellar motor switch protein G fliH 2577659 - 2578375 + | flagellar assembly protein H fliI 2578272 - 2579792 + | flagellum-specific ATP synthase fliJ 2579892 - 2580338 + | flagellar biosynthesis chaperone YPN_2298 2580335 - 2581687 + | flagellar hook-length control protein FliK fliL 2581954 - 2582424 + | flagellar basal body-associated protein FliL TERM 2828 2582761 - 2582751 - g 76 -8.2 -4.18018 | opp_overlap 2582757 CTGGTGCATCTAAAA CCGC TAC GCGG TACTGCGCTATTCGT fliM 2582430 - 2583431 + | flagellar motor switch protein FliM TERM 2829 2583540 - 2583521 - g 76 -3.4 -5.1485 | overlap 2583525 CAAGCAACAGAAAAA CCCACGGC CACA ACCGAAGG CGTCTTTAAATCGCT fliN 2583428 - 2583844 + | flagellar motor switch protein FliN TERM 2830 2584001 - 2584027 + G 76 -12.2 -3.02144 | opp_overlap 2583996 2583995 CGCAATCAAGCGCCG CCCCCCCGGC CATGCCT GCAGGGGGGG TGTTAACGCAGGTGG YPN_2302 2583844 - 2584380 + | flagellar protein FliO fliP 2584461 - 2585201 + | flagellar biosynthesis protein FliP fliQ 2585307 - 2585576 + | flagellar biosynthesis protein FliQ fliR 2585579 - 2586361 + | flagellar biosynthesis protein FliR YPN_2306 2586382 - 2586750 + | hypothetical protein YPN_2307 2586795 - 2587214 + | hypothetical protein TERM 2831 2587239 - 2587254 + T 71 -8.2 -3.55203 | overlap 2587248 TGTCGCTGCTTATCG CCCCGT TTCG GCGGGG TTTACCCCCCCTTTT TERM 2832 2587248 - 2587265 + T 87 -8.3 -4.41548 | overlap 2587239 TTATCGCCCCGTTTC GGCGGGG TTTA CCCCCCC TTTTCTGACCTCTCG YPN_2308 2588431 - 2587472 - | sugar kinase TERM 2833 2587784 - 2587768 - G 71 -7.9 -4.11216 | CCCCCATTTTGAAAA CGGTGTG GCC CACCCCG CGGTTCAGGAAAAAC YPN_2309 2589502 - 2588480 - | sugar ABC transporter, permease YPN_2310 2591082 - 2589505 - | sugar ABC transporter, ATP-binding protein YPN_2311 2592143 - 2591148 - | sugar-binding periplasmic protein TERM 2834 2591274 - 2591288 + g 86 -5.6 -5.24129 | CACCCCCAGATTCAT CCCATC AGT GAGGGG TTTTTTATCGAGCAG TERM 2835 2591332 - 2591306 - G 88 -14.4 -3.4252 | opp_overlap 2591303 2591302 2591300 TTTTATCGAGCAGAA GCTTGGCGACGG TAT CCATCGCCAGGC TGGCATCTTTAGGAT YPN_2312 2593265 - 2592186 - | sugar transport system permease protein YPN_2313 2595461 - 2593395 - | short chain dehydrogenase YPN_2314 2595703 - 2596680 + | transcriptional regulatory protein flgL 2597722 - 2596709 - | flagellar hook-associated protein FlgL TERM 2836 2597016 - 2597028 + g 70 -3.3 -4.77157 | ACCTCGTCAGAGGCT CCTTG CAG CGGGG TTTTTAATGAATTCA TERM 2837 2597059 - 2597069 + g 85 -4 -5.40072 | GTACCGTATCAATGG TATC AAA GATA TTTTTTTCCGCAGCA flgK 2599492 - 2597828 - | flagellar hook-associated protein FlgK TERM 2838 2598069 - 2598054 - G 70 -8.2 -3.76402 | opp_overlap 2598064 ACGTTACTGACTAAA CCGGCG TAAG CACCGG ACAAGGTGGTTTTAC TERM 2839 2599035 - 2599052 + g 72 -9.9 -3.38178 | CCGTCATCCATATCC CGCAGAT ATTT ATCTGCG TTCTGGAATTGGTTC flgJ 2601307 - 2600363 - | peptidoglycan hydrolase flgI 2602416 - 2601307 - | flagellar basal body P-ring protein flgH 2603120 - 2602431 - | flagellar basal body L-ring protein TERM 2840 2603227 - 2603261 + r 72 -9.8 -2.74144 | overlap 2603226 AGACCTATTATGCTG CGGCGATCAGGGGGCA TGA TGCCCCCCGAAAGCAG GTTTACAGCTGAGCC YPN_2320 2603962 - 2603264 - | flagellar basal-body rod protein FlgG flgF 2604572 - 2603943 - | flagellar basal body rod protein FlgF flgE 2605880 - 2604594 - | flagellar hook protein FlgE TERM 2841 2605663 - 2605639 - G 80 -4.9 -5.1287 | overlap 2605640 2605641 TGCATACGGAAAAAA CCGTTCTGGCT GAT AGCCAGATCCA AACGACGATTAGTGG flgD 2606759 - 2606082 - | flagellar basal body rod modification protein flgC 2607178 - 2606774 - | flagellar basal body rod protein FlgC flgB 2607597 - 2607184 - | flagellar basal body rod protein FlgB flgA 2607779 - 2608534 + | flagellar basal body P-ring biosynthesis protein FlgA YPN_2327 2608685 - 2608987 + | anti-sigma28 factor FlgM YPN_2328 2609006 - 2609446 + | flagella synthesis protein FlgN TERM 2842 2609527 - 2609497 - T 100 -17.7 -5.40474 | opp_overlap 2609497 2609500 ATCCTTTTAAAAAAA CAACGCCGCTCAA TTAAC CTGAGCGGCGTTG TTCTCTGGACGTTTG TERM 2843 2609497 - 2609527 + T 100 -17 -3.51161 | opp_overlap 2609497, overlap 2609500 ATCCTTTTAAAAAAA CAACGCCGCTCA ATTAACC TGAGCGGCGTTG TTCTCTGGACGTTTG TERM 2844 2609500 - 2609524 + T 100 -12.9 -3.885 | opp_overlap 2609497, overlap 2609497 CTTTTAAAAAAACAA CGCCGCTCA ATTAACC TGAGCGGCG TTGTTCTCTGGACGT YPN_2329 2611708 - 2609636 - | hypothetical protein TERM 2845 2611724 - 2611692 - G 91 -11.3 -4.26076 | opp_overlap 2611699, overlap 2611696 2611698 2611699 TTATCTTTACCAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2846 2611720 - 2611696 - G 100 -9.9 -4.72007 | opp_overlap 2611699, overlap 2611692 2611698 2611699 CTTTACCAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2847 2611718 - 2611698 - G 91 -12.5 -3.97149 | opp_overlap 2611699, overlap 2611696 2611692 2611699 TTACCAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2848 2611717 - 2611699 - G 90 -16 -2.97205 | opp_overlap 2611699, overlap 2611698 2611696 2611692 TACCAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2849 2611699 - 2611717 + g 100 -16 -4.8048 | opp_overlap 2611699 2611698 2611696 2611692 TACCAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2330 2612256 - 2611798 - | transposase for the IS1541 insertion element YPN_2331 2613250 - 2612246 - | invasin TERM 2850 2612387 - 2612369 - G 93 -16 -3.07307 | opp_overlap 2612369 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 2851 2612369 - 2612387 + g 100 -16 -4.37092 | opp_overlap 2612369 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT YPN_2332 2614336 - 2613914 - | flagellar protein FlhE precursor flhA 2616414 - 2614336 - | flagellar biosynthesis protein FlhA TERM 2852 2615407 - 2615420 + g 74 -6.7 -4.42062 | overlap 2615403 GGGTGCTTCTACTGC CACAG GCTG CTGTG TTTGTTTACCACGTA TERM 2853 2615853 - 2615865 + g 74 -2.6 -5.17576 | CAGCCTCTTGCGTAA CGTC AGAGC GGCG TTTTTTCGCTTCATC TERM 2854 2616136 - 2616148 + g 73 -9.1 -3.78775 | opp_overlap 2616135 2616132 CATCAGAATAATACG CGTGG AAG CCACG TTTAGTGATAGACGC flhB 2617574 - 2616414 - | flagellar biosynthesis protein FlhB TERM 2855 2616817 - 2616830 + g 70 -9.5 -3.21218 | ACCATCATCCGACGA CGGGC CATC GCCCG TTGCTGCTGACGAAT TERM 2856 2618318 - 2618304 - g 70 -4.2 -4.65078 | overlap 2618315 ATAGGTGCAACAAAA GGCACA TCA TACGCC TCCAAAGCGGCACGA TERM 2857 2618368 - 2618355 - g 78 -2.3 -5.27476 | overlap 2618356 TTTAAGAAAACAAAA TTCCC ATTT GGGAT GTCGCTACCTACATG YPN_2335 2618106 - 2618564 + | membrane protein YPN_2336 2618558 - 2618884 + | acyl carrier protein TERM 2858 2618891 - 2618908 + T 75 -8.4 -3.89336 | opp_overlap 2618890 TATGACTGAAATAGG CTGGGC TTAATT GCCCAG TTTCGCTTTGGTTAA TERM 2859 2619021 - 2619004 - T 70 -5.5 -4.57073 | CAGTTCGCCCAAAAA CGGCTTG GCCA CAAGTCG ATGAAAATGACTCAT TERM 2860 2619178 - 2619151 - T 100 -7.8 -5.77856 | AATAAATTAAAAAAA GACCGAATACGA TTCC TGATATTCGGTC TAGGGAAATGGCTCT YPN_2337 2619748 - 2619407 - | hypothetical protein YPN_2338 2620729 - 2619845 - | copper resistance protein D TERM 2861 2620680 - 2620654 - G 77 -12.4 -3.03903 | overlap 2620656 AAAAGGCGGTGAATA CAGTGATGCCAA ACA TCAGCATCACTG CCATAAAGTGCAGAA YPN_2339 2621118 - 2620732 - | copper resistance protein TERM 2862 2621452 - 2621440 - R 75 -3.3 -5.18715 | overlap 2621441 AGAAAAACAAGAAAA GGCGA GGA TCGCG GGGAGGGATAGGCAA TERM 2863 2621503 - 2621475 - R 100 -10.3 -4.47456 | ATAGGCAACAACAAA GCCGCAGTACC CAATAAT AGTACCGCGGC GAATATTTTCTCAAT YPN_2340 2622033 - 2621524 - | ferritin TERM 2864 2621880 - 2621899 + g 70 -2.2 -5.00616 | gap 1, opp_overlap 2621897, overlap 2621884 AACGTTCCATATGTT GCATTTCTT CTT GAGA-ATGC TTTTTTAAAAAGGCA YPN_2341 2622434 - 2622664 + | DNA polymerase III subunit theta YPN_2342 2623674 - 2622724 - | proline iminopeptidase TERM 2865 2624152 - 2624135 - R 76 -10.5 -3.05384 | opp_overlap 2624135 CGTTTCGTGAGTTAA CCCGCCA TTAT CGGCGGG TTTTTTATTGTTCAT TERM 2866 2624135 - 2624152 + r 100 -9.8 -5.66229 | opp_overlap 2624135 CGTTTCGTGAGTTAA CCCGCC ATTATC GGCGGG TTTTTTATTGTTCAT YPN_2343 2626447 - 2624396 - | oligopeptidase B TERM 2867 2626684 - 2626664 - R 72 -9.7 -2.83112 | opp_overlap 2626678 ATTGAATTGACCAGA TGGAGGGCA ATA TGCCCTCAA ACATAGCGGGTTATT YPN_2344 2627182 - 2626757 - | hypothetical protein YPN_2345 2627582 - 2627274 - | hypothetical protein YPN_2346 2627942 - 2627622 - | hypothetical protein YPN_2347 2629418 - 2628036 - | ATP-dependent RNA helicase DbpA TERM 2868 2630772 - 2630732 - g 72 -9.8 -3.37975 | gap 1, overlap 2630722 ACTGACCAGCCAGAA TATCACCTATCGCGGGCTG GAAA CTGCCCT-GATAGGCGATA CACAGATTCGGTTAT purT 2629731 - 2630912 + | phosphoribosylglycinamide formyltransferase 2 TERM 2869 2630975 - 2630948 - T 87 -8.5 -4.49958 | opp_overlap 2630948, overlap 2630952 ACGCTAGCAAATAAA TAAACCCGCCA TTCAGC CAGCGGGTTTA TTTTTATCTATCAAT TERM 2870 2630948 - 2630975 + T 89 -7.1 -5.04597 | opp_overlap 2630948 2630952 ACGCTAGCAAATAAA TAAACCCGC CATTCAGCCA GCGGGTTTA TTTTTATCTATCAAT TERM 2871 2630971 - 2630952 - T 74 -4.9 -4.80736 | opp_overlap 2630948, overlap 2630948 TAGCAAATAAATAAA CCCGCCA TTCAGC CAGCGGG TTTATTTTTATCTAT YPN_2349 2631295 - 2631038 - | hypothetical protein YPN_2350 2631460 - 2632836 + | para-aminobenzoate synthase component I YPN_2351 2632833 - 2633432 + | hypothetical protein TERM 2872 2633456 - 2633441 - f 100 -11.8 -3.92373 | opp_overlap 2633441 TATTTGACTCATAAA GCCGCC ATTT GGCGGC TGTTAACCTGTGACA TERM 2873 2633441 - 2633456 + F 86 -11.8 -3.07962 | opp_overlap 2633441 TATTTGACTCATAAA GCCGCC ATTT GGCGGC TGTTAACCTGTGACA TERM 2874 2633843 - 2633823 - f 70 -7.5 -3.79993 | TTAGAGACCAAAATA TACCGGGCC ATT GACCCCGTA GCTGAATAACTAGAA TERM 2875 2634573 - 2634585 + G 71 -5.5 -4.56607 | opp_overlap 2634571, overlap 2634571 GCAAAACATACTACT CCATC GGC GGTGG TTTTATCGTTGATGA YPN_2352 2634140 - 2635504 + | L-serine dehydratase TERM 2876 2635486 - 2635504 + T 78 -2.4 -5.47218 | overlap 2635490 TGGTGGCCTGGCGAT TAAAGTGC AGT GTACTTGA TTTTTTTCGCTGACA TERM 2877 2635655 - 2635673 + T 100 -8.8 -4.82901 | opp_overlap 2635643 AAAGGATGGCGCGGC TAGCCCCC AGG GAGGGCTA TTTTTATGCAGGGAA TERM 2878 2635782 - 2635743 - T 100 -15.2 -3.62046 | opp_overlap 2635743 GCACTTTGTCAACAA CCTCTAATGCACGTCA GTTAAATA TGACGGGCATTAGAGG TTTACACCATCACCG TERM 2879 2635743 - 2635782 + T 100 -15.2 -3.55444 | opp_overlap 2635743 GCACTTTGTCAACAA CCTCTAATGCACGTCA GTTAAATA TGACGGGCATTAGAGG TTTACACCATCACCG YPN_2353 2636281 - 2635784 - | 4-hydroxyphenylacetate 3-monooxygenase coupling protein YPN_2354 2637864 - 2636302 - | 4-hydroxyphenylacetate 3-monooxygenase YPN_2355 2639299 - 2637932 - | 4-hydroxyphenylacetate permease TERM 2880 2638526 - 2638556 + g 75 -10.5 -3.36569 | overlap 2638517 2638523 2638527 AATTTCCCGCCACAT CGCGGATTGTGGT AAGGC ACCATAATCCGCC TGTTTCGCCAATTGC TERM 2881 2638527 - 2638555 + g 81 -14 -2.6162 | overlap 2638517 2638526 2638523 ATTTCCCGCCACATC GCGGATTGTGGT AAGGC ACCATAATCCGC CTGTTTCGCCAATTG TERM 2882 2639231 - 2639246 + g 76 -3.2 -5.06414 | GACGGACTGCTGCTG CGCACT TAAT GGTGTG TTTTTATTGACCGGC YPN_2356 2640131 - 2639325 - | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 2883 2640066 - 2640083 + g 91 -2.7 -5.72207 | GCTACACAAACCTAG CCATAAG CCAA TTTGTGG TTTTTTTGCTTTCAG YPN_2357 2640945 - 2640142 - | 2-oxo-hept-3-ene-1,7-dioate hydratase TERM 2884 2640332 - 2640344 + g 71 -10.5 -3.10344 | opp_overlap 2640325 TGATTCAATACCGCC GCGGC AAC GCCGC TCTCTTCAATCACGC YPN_2358 2641337 - 2640939 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase YPN_2359 2642219 - 2641362 - | 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPN_2360 2643735 - 2642338 - | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase TERM 2885 2642904 - 2642886 - G 74 -2.3 -5.06414 | TCTCTTGAATAAAAA TGCGCGA ACCCG CCGTGCA ACGTTCACCATTGAG YPN_2361 2644502 - 2643732 - | 5-carboxymethyl-2-hydroxymuconate delta-isomerase YPN_2362 2645131 - 2644499 - | hypothetical protein TERM 2886 2645294 - 2645270 - H 78 -10.3 -3.31144 | opp_overlap 2645268 2645270 2645273, overlap 2645273 2645292 TCGTGATCTTGATAA CAATTTATTTA CAA TAAATAAATTG TCTTTAAAAAAACAA TERM 2887 2645270 - 2645294 + H 78 -10.3 -3.34398 | opp_overlap 2645270 2645273 2645292, overlap 2645268 2645273 TCGTGATCTTGATAA CAATTTATTTA CAA TAAATAAATTG TCTTTAAAAAAACAA TERM 2888 2645557 - 2645567 + G 87 -4.6 -5.42862 | TTGCAGGCTCGTGAA GCCG CTA TGGC TTTTTTTCGGCCTAT YPN_2363 2645515 - 2645982 + | homoprotocatechuate degradative operon repressor TERM 2889 2646070 - 2646043 - T 100 -17 -3.62046 | opp_overlap 2646037 GTACGTTGTCAATAA CCTCAGGGGAGC CGAA GCGCCCCTGAGG TTCCACTCTCTGCTT YPN_2364 2647460 - 2646084 - | membrane protein YPN_2365 2648248 - 2649222 + | PTS system, mannose-specific IIAB component YPN_2366 2649314 - 2650111 + | PTS system, mannose-specific IIC component TERM 2890 2650486 - 2650519 + G 70 -9.5 -3.33162 | overlap 2650494 CATTAAAGTGGGTCT GATGGGGCCACTGGC CGGT GTCGGTGACCCGATC TTCTGGGGTACCGTA YPN_2367 2650118 - 2651005 + | mannose-specific PTS system protein IID TERM 2891 2651028 - 2651051 + F 100 -8.8 -4.89567 | opp_overlap 2651031, overlap 2651031 GATTATCTTCATCCA AAACCGGGGG CTTG CTCCCGGTTA TTTTATCTTTTAGAC TERM 2892 2651048 - 2651031 - f 79 -8.3 -4.18494 | opp_overlap 2651031 2651028 TATCTTCATCCAAAA CCGGGGG CTTG CTCCCGG TTATTTTATCTTTTA TERM 2893 2651031 - 2651048 + F 100 -10.5 -4.52747 | opp_overlap 2651031, overlap 2651028 TATCTTCATCCAAAA CCGGGGG CTTG CTCCCGG TTATTTTATCTTTTA YPN_2368 2651205 - 2651666 + | hypothetical protein TERM 2894 2652401 - 2652390 - g 78 -2.2 -5.24449 | CAGAAACGGAAAAAA TGCG CAGT CACA GTTTTTGGGTGTTGG YPN_2369 2652095 - 2652664 + | hypothetical protein TERM 2895 2652757 - 2652719 - T 100 -24.8 -3.00946 | opp_overlap 2652723, overlap 2652723 CTGCGCGATAAATGA GAAATCCCCCGGCGATAT ATC AAATCGCCGGGGGATTTC AGTAAAGCACCTGTT TERM 2896 2652753 - 2652723 - T 100 -19.8 -4.17701 | opp_overlap 2652723, overlap 2652719 GCGATAAATGAGAAA TCCCCCGGCGATAT ATC AAATCGCCGGGGGA TTTCAGTAAAGCACC TERM 2897 2652723 - 2652753 + T 100 -19.8 -3.64703 | opp_overlap 2652723 2652719 GCGATAAATGAGAAA TCCCCCGGCGATAT ATC AAATCGCCGGGGGA TTTCAGTAAAGCACC YPN_2370 2655116 - 2652825 - | ferrichrome receptor protein TERM 2898 2653167 - 2653177 + g 74 -6.8 -4.33165 | GTTACCGTTGTTCGT CCCA TTT TGGG TTTTAGTCAGTTTAG TERM 2899 2654662 - 2654688 + g 71 -5.8 -4.36914 | overlap 2654663 2654685 2654687 CGAATACGGTAATTC TGTGATGGGTTA CCA TAACCCCGCACG TTTTGTACCGAAGCG TERM 2900 2655054 - 2655076 + g 74 -12 -2.82623 | opp_overlap 2655052 2655050 2655055, overlap 2655053 GACGCACAAAAGACG AGGAGCCGAA CGT TTCGGCTCCG TACTTATGGAGAGAG TERM 2901 2655075 - 2655055 - G 90 -15.5 -2.98789 | opp_overlap 2655054 2655053, overlap 2655052 2655050 ACGCACAAAAGACGA GGAGCCGAA CGT TTCGGCTCC GTACTTATGGAGAGA YPN_2371 2655460 - 2655978 + | PAS TERM 2902 2656634 - 2656616 - g 71 -6.6 -4.22214 | AGTGAGCGAAAACAA CGCGAAGA TGC CCTGCGCG CCAGTGAAGCTGCCC YPN_2372 2656187 - 2657542 + | hypothetical protein TERM 2903 2657547 - 2657578 + F 100 -9.5 -4.98255 | overlap 2657549 TCACCTCTTGAGGTA TATTGCGGGTGGC TATCAT GTCACCTGCAATG TTTTTATGATTGGCC TERM 2904 2657549 - 2657576 + F 88 -9.9 -4.11322 | overlap 2657547 ACCTCTTGAGGTATA TTGCGGGTGGC TATCAT GTCACCTGCAA TGTTTTTATGATTGG YPN_2373 2657764 - 2658042 + | hypothetical protein rrmA 2659103 - 2658264 - | 23S rRNA methyltransferase A TERM 2905 2659146 - 2659132 - H 76 -7.8 -4.22858 | overlap 2659129 ATAACAGATAAATAA CCGCCA AGA TAGCGG GCAGATGCGGCGTTA YPN_2375 2659498 - 2660253 + | hypothetical protein TERM 2906 2660332 - 2660301 - T 86 -11.7 -3.34398 | opp_overlap 2660309 2660330, overlap 2660309 GGGTTTCCCCAAATA TGAAAAAACCCGC ACAAAG GCGGGTTTTTACA GCAAACGCTGATTAG TERM 2907 2660309 - 2660324 + T 78 -7.5 -4.56597 | opp_overlap 2660309 2660301 CCAAATATGAAAAAA CCCGC ACAAAG GCGGG TTTTTACAGCAAACG TERM 2908 2660324 - 2660309 - T 91 -7.5 -5.32699 | opp_overlap 2660309, overlap 2660301 CCAAATATGAAAAAA CCCGC ACAAAG GCGGG TTTTTACAGCAAACG YPN_2376 2660553 - 2660344 - | cold shock-like protein CspC YPN_2377 2660712 - 2660596 - | hypothetical protein YPN_2378 2661714 - 2662313 + | palmitoyl transferase for Lipid A TERM 2909 2662384 - 2662348 - T 89 -6.8 -5.28481 | opp_overlap 2662350, overlap 2662350 TATTTAACTAAAAAA CAGCATATAACCAT AATATTAAA ATGGTTATATGCTT GGTTGAGGGCGAATT TERM 2910 2662382 - 2662350 - T 88 -9.4 -4.26777 | opp_overlap 2662350, overlap 2662348 TTTAACTAAAAAACA GCATATAACCAT AATATTAAA ATGGTTATATGC TTGGTTGAGGGCGAA TERM 2911 2662350 - 2662382 + T 74 -9.4 -3.33696 | opp_overlap 2662350 2662348 TTTAACTAAAAAACA GCATATAACCAT AATATTAAA ATGGTTATATGC TTGGTTGAGGGCGAA YPN_2379 2663991 - 2662618 - | aromatic amino acid transport protein YPN_2380 2664539 - 2664228 - | hypothetical protein YPN_2381 2664881 - 2664582 - | hypothetical protein TERM 2912 2665132 - 2665103 - R 95 -12.9 -3.10071 | opp_overlap 2665101 2665096, overlap 2665093 AAATTGCAGGTAACA TGCTGACACTGCC TGTT GGTAGTGCCAGCA TCGGGACACGTTTAT YPN_2382 2665419 - 2665144 - | hypothetical protein YPN_2383 2666002 - 2666235 + | hypothetical protein YPN_2384 2666565 - 2666326 - | hypothetical protein TERM 2913 2666852 - 2666842 - H 87 -5.4 -5.42259 | GCATCTTTAAAAAAA TGGT TAC ACCA ACAACCGCTATCAGA TERM 2914 2667014 - 2666988 - H 71 -6.6 -4.14243 | opp_overlap 2666988 TATGGCACTTGAAAA CTCTTTTGCCAA ACC TCGGCCAAAAAG TCTTTACCGCACATT TERM 2915 2667190 - 2667176 - g 70 -9.2 -3.56594 | opp_overlap 2667176, overlap 2667166 GTAAATGGGTCGAAA CCCACC TAG GGCGGG TCATCTATCTTGAAG YPN_2385 2667121 - 2667507 + | AraC family transcription regulator YPN_2386 2667753 - 2667589 - | hypothetical protein YPN_2387 2668409 - 2670127 + | ABC transporter ATP-binding protein YPN_2388 2670230 - 2671081 + | hypothetical protein TERM 2916 2671148 - 2671134 - f 75 -5.6 -4.71318 | AAGATCAAAAAACAA CCTCTG GAG CAGCGG CCTTCCCTGCTCCTC YPN_2389 2671318 - 2671602 + | hypothetical protein TERM 2917 2671648 - 2671629 - f 76 -9.3 -3.49858 | opp_overlap 2671623, overlap 2671621 TCAAGCACACCATAA GCCATGG TGAATG CCATGGC TGCTGATAAGTTCAG TERM 2918 2672043 - 2672022 - g 76 -5.8 -4.62772 | overlap 2672023 TGGAAAGCAAATAAA CCGCAAGC GGAGAT GCTTGCGC AATGGCATGAGGCAC YPN_2390 2671992 - 2672804 + | hypothetical protein TERM 2919 2673097 - 2673064 - T 71 -9.7 -2.66748 | opp_overlap 2673069, overlap 2673069 GAGGAGCCAAATTTA GAAAATCCCGTTTAG GAAA CTAAGCGGGATTTTT GCTTTTCTATCACTG TERM 2920 2673092 - 2673069 - T 95 -9.6 -4.51196 | opp_overlap 2673069, overlap 2673064 GCCAAATTTAGAAAA TCCCGTTTAG GAAA CTAAGCGGGA TTTTTGCTTTTCTAT TERM 2921 2673069 - 2673092 + T 100 -11.8 -5.15526 | opp_overlap 2673064 2673069 GCCAAATTTAGAAAA TCCCGTTTAG GAAA CTAAGCGGGA TTTTTGCTTTTCTAT YPN_2391 2673462 - 2673205 - | ThuR, regulatory protein for trehalosemaltose transport YPN_2392 2673771 - 2673478 - | IS100 transposase YPN_2393 2674257 - 2673823 - | IS100 transposase TERM 2922 2674176 - 2674190 + g 77 -11.4 -3.3506 | overlap 2674189 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_2394 2675279 - 2674257 - | transposase for insertion sequence IS100 TERM 2923 2675301 - 2675283 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_2395 2676180 - 2675293 - | hypothetical protein TERM 2924 2675516 - 2675526 + g 70 -4.6 -4.59773 | TAACCGCCAGGACGA GTGG GAT CCGC TTTTTGCAGATACCC TERM 2925 2675969 - 2675953 - G 76 -5.9 -4.60487 | TATCATTTCCAAAAA TGTCGAA TTA TTCAACA CTCGTGGACGTGATG TERM 2926 2676392 - 2676356 - R 89 -12.6 -2.87881 | gap 1, opp_overlap 2676356 2676372, overlap 2676363 2676377 TAAGTTCGTCACACA TCCGAAACGTTT-AGAT TTAA ATCCGAAACGTTTCGGA TCTACTCTAATGCCG TERM 2927 2676356 - 2676392 + r 75 -10.4 -2.87468 | gap 1, opp_overlap 2676356 2676363 2676377, overlap 2676372 TAAGTTCGTCACACA TCCGAAACGTTTAG-AT TTAA ATCCGAAACGTTTCGGA TCTACTCTAATGCCG TERM 2928 2676392 - 2676377 - R 70 -7.6 -3.7108 | opp_overlap 2676356 2676372, overlap 2676363 2676356 ACGTTTAGATTTAAA TCCGAA ACGT TTCGGA TCTACTCTAATGCCG TERM 2929 2676681 - 2676660 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_2396 2677863 - 2676655 - | transposase for the IS285 insertion element lacY 2677921 - 2679165 + | galactoside permease YPN_2398 2679243 - 2681369 + | alpha-galactosidase TERM 2930 2681375 - 2681394 + T 95 -12.8 -2.94322 | opp_overlap 2681371, overlap 2681372 CGTAAATTAACCTCA GGCCGCCG TTTA TGGCGGCC TACTTTGCGTCCAAT YPN_2399 2681766 - 2681617 - | hypothetical protein YPN_2400 2682496 - 2681756 - | phosphopantetheinyl transferase YPN_2401 2683019 - 2684011 + | C4-dicarboxylate transporter, periplasmic protein TERM 2931 2684022 - 2684048 + F 75 -10.3 -2.73875 | overlap 2684019 AATAACATCCATCCG GCGGTATTGAA TTATT TTTAATACCGC TGATATTACCCAACG TERM 2932 2684302 - 2684314 + G 74 -7.7 -4.15044 | CGCTATTTTATGTAT GGTGA CGT TCACC TTTATTGGCGCAGCG YPN_2402 2684135 - 2684641 + | C4-dicarboxylate transporter, small subunit YPN_2403 2684661 - 2685953 + | C4-dicarboxylate transporter, large subunit YPN_2404 2686211 - 2686840 + | GerR-family transcriptional regulatory protein TERM 2933 2686892 - 2686950 + T 100 -16.3 -2.81072 | opp_overlap 2686891 2686894 2686907, overlap 2686894 2686907 TGAAGTCGGGCAAAC CATTTGCGGCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGGC-GCTGAGG ATTCTGTTACCTCGC TERM 2934 2686894 - 2686951 + T 82 -10.2 -3.68988 | gap 3, opp_overlap 2686891 2686894 2686907, overlap 2686892 2686907 AAGTCGGGCAAACCA TTTGC-G-GCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGGCGCTGAGGA TTCTGTTACCTCGCC TERM 2935 2686948 - 2686894 - T 95 -13.1 -2.90992 | opp_overlap 2686892 2686894 2686907, overlap 2686891 2686907 AAGTCGGGCAAACCA TTTGCGGCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGG-CGCTGA GGATTCTGTTACCTC TERM 2936 2686907 - 2686936 + T 100 -12.3 -3.55444 | gap 1, opp_overlap 2686907 2686894 2686891, overlap 2686892 2686894 CATTTGCGGCCTAAA TACCG-CTTGCCGA TAG TTGGCAAGACGGTA TTTAGGCGCTGAGGA TERM 2937 2686936 - 2686907 - T 78 -10.1 -3.53224 | gap 1, opp_overlap 2686892 2686894 2686907, overlap 2686894 2686891 CATTTGCGGCCTAAA TACCG-CTTGCCGA TAG TTGGCAAGACGGTA TTTAGGCGCTGAGGA TERM 2938 2687395 - 2687372 - T 100 -13.2 -4.15998 | opp_overlap 2687372 AGCCAAATTAAAGAA CCCTGCCTAG GTAA CTAAGCAGGG TTTTTGCATTTCAGT TERM 2939 2687372 - 2687395 + T 100 -11 -4.81851 | opp_overlap 2687372 AGCCAAATTAAAGAA CCCTGCCTAG GTAA CTAAGCAGGG TTTTTGCATTTCAGT TERM 2940 2687640 - 2687604 - T 79 -6.8 -4.66537 | gap 1, opp_overlap 2687610 2687616 2687616, overlap 2687606 TGGCTGAACATAAAA TCTTA-ATGAAAAGCCC TGAG GGACTTTTCATCTATGA GTATTTGTAAAGATT YPN_2405 2688246 - 2687707 - | hypothetical protein TERM 2941 2688093 - 2688105 + g 91 -3.3 -5.83211 | TTAGCTGTTTATCAC GCTCA AGT TGTGC TTTTTTATTTTCCTC TERM 2942 2688137 - 2688156 + g 90 -8.6 -5.06103 | ACAGCCTCTCTTGCC TCACGAGT CTGA GCTCGTGA TTTTTTAGCCGTTCT YPN_2406 2689031 - 2688336 - | hypothetical protein TERM 2943 2689840 - 2689830 - g 76 -8.2 -4.21141 | CCTGAACAAATGAAA GCGG TAG CCGC GGCTGGACACGAAGT YPN_2407 2689608 - 2690489 + | polysaccharide deacetylase TERM 2944 2690575 - 2690544 - g 86 -3 -5.65177 | gap 1, overlap 2690547 2690548 ACATCTATAAAAAAA TATCTGCTGATGGCT GGC AGCCG-CAGCAATTA ACAATCAAAGATGTC YPN_2408 2690525 - 2691865 + | sugar transporter YPN_2409 2693323 - 2691893 - | hypothetical protein TERM 2945 2693087 - 2693076 - G 85 -3.6 -5.47821 | ACGGAGGCAAAAAAA GCCG CAAT CAGC ATATTGAAACTGTCG YPN_2410 2693617 - 2694984 + | argininosuccinate synthase TERM 2946 2695063 - 2695092 + T 83 -10.7 -3.4678 | overlap 2695064 CTGCGCGACCCCAAG CGGTTAAGGGGAG CTTC CCCCCCTTAACCC TTCTCGTGTCACAGT TERM 2947 2695064 - 2695091 + T 95 -14.2 -2.67747 | overlap 2695063 TGCGCGACCCCAAGC GGTTAAGGGGAG CTTC CCCCCCTTAACC CTTCTCGTGTCACAG lldD 2696334 - 2695189 - | L-lactate dehydrogenase TERM 2948 2696130 - 2696118 - G 70 -9.1 -3.50853 | CTGGCCCAAGGACAA CAGGC ATT GCCTG CGTCTCGCCGAAAAG YPN_2412 2697908 - 2696631 - | racemase YPN_2413 2698782 - 2697940 - | hydrolase YPN_2414 2699570 - 2698830 - | oxidoreductase YPN_2415 2699998 - 2700420 + | hypothetical protein YPN_2416 2701733 - 2700429 - | transmembrane transporter TERM 2949 2701148 - 2701137 - G 70 -2.2 -4.92314 | ATCAAGGTAGAAAAA GGCA AAAA TACC TAACCCCACGGCGGG YPN_2417 2701895 - 2702089 + | hypothetical protein TERM 2950 2702207 - 2702217 + F 73 -5.4 -4.65168 | opp_overlap 2702207, overlap 2702214 TGTTTTCAGAATAAT GTCA GAT TGAC TTTTTAAAATGTCAT TERM 2951 2702214 - 2702231 + F 76 -2.7 -5.38054 | opp_overlap 2702207, overlap 2702207 AGAATAATGTCAGAT TGACTTT TTAA AATGTCA TTTTTATTTATAAAA TERM 2952 2703906 - 2703893 - g 71 -6.7 -4.21773 | CGGCAAGACAAACAA TGCCA TTAG TGGCA AATGCCACAGCACAA TERM 2953 2705899 - 2705878 - g 77 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_2418 2702758 - 2705910 + | hypothetical protein YPN_2419 2707081 - 2705873 - | transposase for the IS285 insertion element TERM 2954 2707395 - 2707373 - R 100 -11.3 -5.16841 | opp_overlap 2707371 GCACACCAATAAAAA GGGCTGACA ATAGA TGCCAGCCC CACTCTCTTTCCCCT YPN_2420 2707769 - 2707452 - | hypothetical protein YPN_2421 2709312 - 2708203 - | hypothetical protein sbcB 2709605 - 2711035 + | exonuclease I TERM 2955 2711154 - 2711165 + T 71 -4.4 -4.84761 | TGCCTGTGCGGCAGT GAAC TTAA GTTC TTTTTGTCAGCATCT TERM 2956 2711739 - 2711716 - T 100 -11.8 -5.47159 | gap 1, opp_overlap 2711716 TCTGAATACAAAAAA TCCGGCAACAG AGA CTGT-GCCGGA TTGATAAACTTAATG TERM 2957 2711716 - 2711739 + T 86 -11.8 -3.19157 | gap 1, opp_overlap 2711716 TCTGAATACAAAAAA TCCGGCAACAG AGA CTGT-GCCGGA TTGATAAACTTAATG YPN_2423 2713163 - 2711772 - | amino acid permease TERM 2958 2713326 - 2713311 - R 74 -10.4 -2.57132 | overlap 2713310 CTGCTGCGCCATAAT CGCTGC ATGT GCAGCG CATACCGGTGGGCAC TERM 2959 2713513 - 2713488 - R 100 -7.6 -6.15259 | opp_overlap 2713488 2713491 GAATGCAAAAAAAAA TAACCGACGC GTTTAA ACGTCGGCTA TTTCATTCGGCGTAT YPN_2424 2714714 - 2713623 - | hypothetical protein YPN_2425 2715000 - 2715893 + | hypothetical protein TERM 2960 2716277 - 2716256 - gf 70 -2.9 -4.81083 | overlap 2716258 GGGAATCAGCAAAAA GTGGCCATT GGTA AATGGCTGC GCGGTGATGCACAGG YPN_2426 2715788 - 2716540 + | ATPase YPN_2427 2716537 - 2717532 + | ribose transport system, permease protein YPN_2428 2717777 - 2718211 + | hypothetical protein YPN_2429 2719193 - 2718366 - | hypothetical protein TERM 2961 2719725 - 2719676 - H 78 -10.1 -3.48395 | gap 1, opp_overlap 2719687, overlap 2719687 AGGTGGCGTAGAGAA CGCAGT-AGAGAGCCCTCGGAAGA TAA TCTTCCGAGGGCTTTTTTATTGCT CATCATTTTATAGAC TERM 2962 2719687 - 2719713 + H 100 -21 -5.52023 | opp_overlap 2719676 2719687 AGAACGCAGTAGAGA GCCCTCGGAAGA TAA TCTTCCGAGGGC TTTTTTATTGCTCAT TERM 2963 2719713 - 2719687 - H 100 -21 -2.96538 | opp_overlap 2719687, overlap 2719676 AGAACGCAGTAGAGA GCCCTCGGAAGA TAA TCTTCCGAGGGC TTTTTTATTGCTCAT TERM 2964 2720762 - 2720744 - g 73 -10.2 -3.33711 | opp_overlap 2720744 2720743 2720741 2720755 CATGGAGAAATTGAA GGCGCTGG GTG CCAGCTCC ATTCTGGTATTACCG hisG 2719899 - 2720798 + | ATP phosphoribosyltransferase TERM 2965 2720879 - 2720865 - g 70 -2.1 -4.93316 | gap 1, overlap 2720856 GAAGAACAGCAAAAA GC-GCT GTTG AGCCGC CCAGCCATCAATGCA hisD 2720802 - 2722133 + | histidinol dehydrogenase YPN_2432 2722136 - 2723284 + | histidinol-phosphate aminotransferase TERM 2966 2724078 - 2724090 + GT 71 -9.1 -3.27121 | GATGGATGAGTGCCT GGCAC GCT GTGCC TTGGATATTTCTGGT YPN_2434 2724881 - 2724294 - | hypothetical protein YPN_2433 2723281 - 2724348 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 2724348 - 2724938 + | imidazole glycerol phosphate synthase subunit HisH TERM 2967 2725129 - 2725109 - g 73 -9 -3.65902 | opp_overlap 2725119 CTGACCGGAGCCAAA GATCCGGC CGCTC GCCAGATC CCACTACTGCGCGAG YPN_2436 2724944 - 2725681 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 2968 2726134 - 2726122 - g 73 -9.1 -3.77206 | GAGAAGCGTACCAAA GCCAC CAC GTGGC AAACCGAAGATTGGG YPN_2437 2725663 - 2726439 + | imidazole glycerol phosphate synthase subunit HisF YPN_2438 2726433 - 2727047 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2969 2727100 - 2727076 - T 100 -10 -5.42259 | opp_overlap 2727076 TCACTGGCAAAAAAA CGCCTCCAAC TTATC ACTGGAGGCG TTTTTATTGGGCAGC TERM 2970 2727076 - 2727100 + T 100 -8.6 -5.06414 | opp_overlap 2727076 TCACTGGCAAAAAAA CGCCTCCA ACTTATCAC TGGAGGCG TTTTTATTGGGCAGC YPN_2439 2728656 - 2727247 - | 6-phosphogluconate dehydrogenase TERM 2971 2728963 - 2728948 - R 89 -10.4 -4.01603 | overlap 2728941 2728958 TAGGCAAAGAGCAAA GCGCCA CAAA TGGCGC GGCCTAAACTGCCAA YPN_2440 2729935 - 2729042 - | UTP-glucose-1-phosphate uridylyltransferase YPN_2441 2730909 - 2730019 - | UTP-glucose-1-phosphate uridylyltransferase TERM 2972 2730216 - 2730227 + g 71 -5.8 -4.36914 | overlap 2730211 GAATTTCATCCCCCG CACC ACGT GGTG TTTTCTCAAGCAACG TERM 2973 2732328 - 2732341 + G 74 -4.5 -4.83615 | gap 1 AGAAACAGCGATGAG CGAGGG CCA CCC-CG TTTTTATCGCGAATA YPN_2442 2731855 - 2733669 + | siderophore biosynthetic enzyme TERM 2974 2733919 - 2733902 - g 89 -2.5 -5.70829 | opp_overlap 2733903, overlap 2733903 2733905 AATACTAGAAAAAAA TCACGGC AAAA GCCGAGT GCGTTTTAACTGCAC TERM 2975 2734679 - 2734667 - g 73 -3.3 -5.01811 | opp_overlap 2734668, overlap 2734660 2734668 TGATCAAAGTAAAAA CCCGT TTT ACGGT ATCTTGGAGATAGAT TERM 2976 2734841 - 2734808 - g 80 -13.9 -3.00946 | overlap 2734786 2734805 TGGGCGGACAAATTA TGCCCAATCCGCCAC CACC GCATCGGATTGGGCA TCCGCCGAAACCCGA YPN_2443 2733882 - 2736143 + | iron-siderophore receptor TERM 2977 2736166 - 2736187 + F 71 -8.7 -3.39908 | overlap 2736164 AGTTGGATACCCTCA CAGCCGG CCACTTTT CCGGCTG TATCTTTTGCCAACG YPN_2444 2736233 - 2737312 + | iron-siderophore transport system, periplasmic binding protein TERM 2978 2737769 - 2737781 + G 75 -9.1 -3.84246 | opp_overlap 2737769 2737767 GCGGGCAACGGAATA CGCAC TCG GTGCG TTTGGTGCTTACCGG TERM 2979 2738073 - 2738111 + G 70 -2.9 -4.75472 | gap 1, overlap 2738074 2738075 2738076 AGTAGGCGCAACATT GCTGGCCGCTACCGCGAC GGCA GTAGCGGGTCCGGTC-GC TTTTATTGGTCTGGC YPN_2445 2737309 - 2738349 + | iron-siderophore transport system, transmembrane component YPN_2446 2738336 - 2739376 + | iron-siderophore transport system, membrane permease component YPN_2447 2739373 - 2740221 + | iron-siderophore transport system, ATP-binding component YPN_2448 2742174 - 2740330 - | siderophore biosynthetic enzyme TERM 2980 2740413 - 2740426 + g 72 -8.1 -3.96469 | opp_overlap 2740412 2740413 CAGGGTCAGCTAAAT CCAGC ATGT GCTGG TTATTGTTGAGCTGT YPN_2449 2742749 - 2742171 - | siderophore biosynthetic enzyme YPN_2450 2744047 - 2742749 - | siderophore biosynthetic enzyme TERM 2981 2742780 - 2742797 + g 70 -2.7 -4.87665 | opp_overlap 2742782, overlap 2742762 2742782 AGTGATGGCGCACTG AATTGCT GAAA AGCAATG TTTTTCTCAATCGGA YPN_2451 2745629 - 2744082 - | decarboxylase TERM 2982 2744444 - 2744425 - G 74 -7.9 -4.14874 | ATAACATGTTCAAAA GCCAAAC CAAGCT GTTTGGC TCCCATAATCCGTAG TERM 2983 2745145 - 2745166 + g 74 -6.5 -4.37886 | overlap 2745147 CTGGTGAAAATACCG TCGCCCTGG CTAC CTAGGGCCA TTTTATCGCGGGTCC TERM 2984 2745780 - 2745752 - R 72 -7.5 -3.9751 | opp_overlap 2745756 AAATAAAGAATACAA CCAAGTTTCTG TCTAATG CAGGAACTTGG CTAACTAATAAGATT YPN_2452 2746560 - 2745781 - | ferric iron reductase involved in ferric hydroximate transport TERM 2985 2746910 - 2746932 + H 72 -7.1 -3.91716 | gap 1 TGGATTGATTTTTTT GTG-ATCGAC TCTG GTCGATGCAC TTCTTTAACAAATGG YPN_2453 2747002 - 2748615 + | membrane protein TERM 2986 2748704 - 2748669 - T 100 -8.3 -4.85782 | gap 1, opp_overlap 2748670 2748670 2748673, overlap 2748670 2748673 GCCTGGAAAAATAAA TGATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TCT CTTTCCACTACCTAT TERM 2987 2748670 - 2748703 + T 100 -14 -3.38522 | gap 1, opp_overlap 2748670 2748669 2748673, overlap 2748670 2748673 CCTGGAAAAATAAAT GATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TC TCTTTCCACTACCTA TERM 2988 2748670 - 2748705 + T 82 -10.5 -3.61922 | gap 1, opp_overlap 2748669 2748670 2748673, overlap 2748670 2748673 CCTGGAAAAATAAAT GA-TTAGGCCCGGTGG AGAAA CCATCGGGCCTATCTC TTTCCACTACCTATT TERM 2989 2748703 - 2748670 - T 91 -11.8 -3.50746 | gap 1, opp_overlap 2748670 2748670 2748673, overlap 2748669 2748673 CCTGGAAAAATAAAT GATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TC TCTTTCCACTACCTA TERM 2990 2748673 - 2748701 + T 100 -16.8 -3.26031 | opp_overlap 2748670 2748669 2748673, overlap 2748670 2748670 GGAAAAATAAATGAT TAGGCCCGGTGG AGAAA CCATCGGGCCTA TCTCTTTCCACTACC TERM 2991 2748701 - 2748673 - T 100 -14.6 -2.57916 | opp_overlap 2748673 2748670 2748670, overlap 2748670 2748669 GGAAAAATAAATGAT TAGGCCCGGTGG AGAAA CCATCGGGCCTA TCTCTTTCCACTACC YPN_2454 2750616 - 2748760 - | putative assembly protein TERM 2992 2748788 - 2748802 + g 72 -3.5 -4.79174 | AGTGACTTTTTCAGA TCGTC CACAC GGCGA TTTTGTTGGTTACGT TERM 2993 2750477 - 2750491 + g 76 -4.2 -4.99638 | overlap 2750479 TCACCCTCCAACTGC AAGTGG TAA CCACTC TTTTTCTCTACCTGT TERM 2994 2750688 - 2750661 - R 71 -4.8 -4.63592 | TCTCAATAAAAAGAA TGACTAGTCCAG ACTG CTGACCAAGTCA AATGAAGGGAAAGCG dcd 2751384 - 2750803 - | deoxycytidine triphosphate deaminase YPN_2456 2752130 - 2751489 - | uridine kinase TERM 2995 2751798 - 2751814 + g 74 -2.2 -5.0666 | overlap 2751799 AATGATCACTTTTTT AGGTTC TAAAT GAACCG TTTCTTTTTTACGTG TERM 2996 2752303 - 2752341 + r 86 -11.8 -3.07344 | opp_overlap 2752317 CTATTTAAGCCGATC TTGAGCCGGAAGCATCAT TGA ATGACCTTTCCGGCTCAG TGTGTTACGCGCTCA YPN_2457 2753487 - 2752375 - | putative ATPase metG 2753752 - 2755779 + | methionyl-tRNA synthetase TERM 2997 2755869 - 2755837 - T 100 -11.3 -4.43208 | opp_overlap 2755844, overlap 2755841 2755843 2755844 AGATCCTTAAAGAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2998 2755865 - 2755841 - T 100 -9.9 -4.78326 | opp_overlap 2755844, overlap 2755837 2755843 2755844 CCTTAAAGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2999 2755863 - 2755843 - T 100 -12.5 -3.99693 | opp_overlap 2755844, overlap 2755841 2755837 2755844 TTAAAGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3000 2755862 - 2755844 - T 100 -16 -2.98189 | opp_overlap 2755844, overlap 2755843 2755841 2755837 TAAAGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3001 2755844 - 2755862 + T 100 -16 -4.8048 | opp_overlap 2755843 2755841 2755837 2755844 TAAAGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2459 2756401 - 2755943 - | transposase for the IS1541 insertion element TERM 3002 2756532 - 2756514 - R 100 -16 -3.07307 | opp_overlap 2756514 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3003 2756514 - 2756532 + r 100 -16 -4.36914 | opp_overlap 2756514 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3004 2756583 - 2756547 - R 71 -8.8 -3.28712 | gap 1, opp_overlap 2756552, overlap 2756552 GTTTTCTGGGCACAA CAAAATGCCGGTCTGGG GTAA CCCT-ACCGGCATTTTT ATGATTGAAACCCGT TERM 3005 2756552 - 2756578 + r 100 -8.7 -4.98255 | gap 1, opp_overlap 2756547 2756552 CTGGGCACAACAAAA TGCCGGTCTGGG GTAA CCCT-ACCGGCA TTTTTATGATTGAAA TERM 3006 2756578 - 2756552 - R 100 -8.7 -4.77165 | gap 1, opp_overlap 2756552, overlap 2756547 CTGGGCACAACAAAA TGCCGGTCTGGG GTAA CCCT-ACCGGCA TTTTTATGATTGAAA YPN_2460 2757281 - 2756619 - | membrane protein TERM 3007 2756912 - 2756898 - G 72 -3.6 -4.84274 | TAACGACATCAAAAA GATAAT CGC ATCATC TAGATCAAACCACAC TERM 3008 2757347 - 2757337 - H 86 -3.2 -5.61689 | AAAATTAATAAAAAA TCAC TGC GCGA TATATAAAAATAGGC YPN_2461 2757979 - 2759055 + | sugar ABC transporter TERM 3009 2759107 - 2759127 + G 74 -11.1 -3.15544 | opp_overlap 2759108 2759110, overlap 2759110 TGCCGATACCTGAAT ACAGCCGCA ATA TGCGGCTGA TTGGTCACAGTGACC TERM 3010 2759126 - 2759108 - g 86 -14.6 -3.07962 | opp_overlap 2759107 2759110, overlap 2759110 GCCGATACCTGAATA CAGCCGCA ATA TGCGGCTG ATTGGTCACAGTGAC TERM 3011 2759110 - 2759124 + G 71 -11.4 -2.78216 | opp_overlap 2759110 2759108, overlap 2759107 CGATACCTGAATACA GCCGCA ATA TGCGGC TGATTGGTCACAGTG TERM 3012 2759124 - 2759110 - g 74 -11.4 -3.09785 | opp_overlap 2759107 2759110, overlap 2759108 CGATACCTGAATACA GCCGCA ATA TGCGGC TGATTGGTCACAGTG TERM 3013 2759266 - 2759252 - g 90 -9.2 -4.63184 | opp_overlap 2759252 AAGGGATGCCAAAAA CCCGCG TCC CGCAGG TTTCATCGCTGCGCC YPN_2462 2759073 - 2760326 + | hypothetical protein TERM 3014 2760506 - 2760474 - T 100 -11.3 -5.01535 | opp_overlap 2760481, overlap 2760480 2760481 GGATAACTAGAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3015 2760500 - 2760480 - T 100 -12.5 -4.09508 | opp_overlap 2760481, overlap 2760474 2760481 CTAGAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3016 2760499 - 2760481 - T 100 -16 -3.04078 | opp_overlap 2760481, overlap 2760480 2760474 TAGAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3017 2760481 - 2760499 + T 100 -16 -4.8048 | opp_overlap 2760481 2760480 2760474 TAGAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2463 2761038 - 2760580 - | transposase for the IS1541 insertion element TERM 3018 2761151 - 2761169 + H 100 -16 -4.37092 | opp_overlap 2761151 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3019 2761169 - 2761151 - H 100 -16 -3.07307 | opp_overlap 2761151 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3020 2761214 - 2761187 - H 84 -9.8 -3.78934 | opp_overlap 2761189, overlap 2761189 TTCTGGGCACAATAA TAGCAGATCGGC TCTG GCCGAACTGCTT CCTGCAAAAATTTTC TERM 3021 2761212 - 2761189 - H 100 -12.4 -3.4811 | opp_overlap 2761189, overlap 2761187 CTGGGCACAATAATA GCAGATCGGC TCTG GCCGAACTGC TTCCTGCAAAAATTT TERM 3022 2761189 - 2761212 + H 93 -12.4 -3.1506 | opp_overlap 2761187 2761189 CTGGGCACAATAATA GCAGATCGGC TCTG GCCGAACTGC TTCCTGCAAAAATTT TERM 3023 2761393 - 2761367 - H 71 -2.2 -5.16681 | opp_overlap 2761390, overlap 2761372 CTAAAAATAAGAAAA TACATGCAAAGA TTC TCATCGCGCGTA ACCAATCTGCTGATT TERM 3024 2762292 - 2762303 + G 73 -5.8 -4.5442 | TTCCGTTATGGATGC TGGC AATG GCCA TTTTCTCATTGGGCG YPN_2464 2761370 - 2762551 + | multidrug resistance protein TERM 3025 2762815 - 2762833 + G 70 -8.8 -3.6512 | ATATGATGTCACTTT GCTGGCAG TAC CTGCGAGC TTTCACCATTATTTA YPN_2465 2762793 - 2763200 + | hypothetical protein TERM 3026 2763634 - 2763650 + G 82 -7.3 -4.62904 | TGGTTTACCCGCTAT TAGCGCA GTT TGCGTTA TTTTTGCCGGTATTT YPN_2466 2763197 - 2763892 + | hypothetical protein TERM 3027 2763903 - 2763927 + F 71 -9.3 -2.98729 | overlap 2763926 GTTGAACCCACTTTC CCCTGGCGT GATAGCG ACGTCAGGG TCTGTAATCCTTATC YPN_2467 2764218 - 2765102 + | cytidine deaminase TERM 3028 2766549 - 2766533 - g 78 -2.2 -5.25803 | AATTGGTACAAAAAA GTGACG ACCTA CACCAC TGGAATCTGCACAAT YPN_2468 2765458 - 2767155 + | malate dehydrogenase TERM 3029 2767189 - 2767162 - f 73 -8.3 -3.65812 | overlap 2767163 TCGTTTTGAATATAA TCCGGCCTGTG CTATAC CGCAGGCCGGG TACTCAGATGCTATC TERM 3030 2767188 - 2767163 - f 83 -11.8 -2.79273 | overlap 2767162 CGTTTTGAATATAAT CCGGCCTGTG CTATAC CGCAGGCCGG GTACTCAGATGCTAT TERM 3031 2767270 - 2767259 - f 71 -3 -5.06816 | AGCGTTGAACAAAAA GTTA CTTG TAAC CCCAAAGCACATGCG TERM 3032 2768026 - 2768038 + G 71 -6.9 -4.26871 | CCTCTATATTCTTAA GCGGG AAC CTCGC TTTCTTGGTCCATTG YPN_2469 2767436 - 2768173 + | hypothetical protein TERM 3033 2768436 - 2768462 + T 100 -13.1 -4.68846 | gap 1, opp_overlap 2768431 TTGTCATTAACTTCA GCCAGT-AGGGC TATC GCCCTGACTGGC TTTTACTTTATTCCT mglC 2769628 - 2768618 - | beta-methylgalactoside transporter inner membrane component YPN_2471 2771169 - 2769649 - | galactose/methyl galaxtoside transporter ATP-binding protein TERM 3034 2770846 - 2770817 - G 86 -2.8 -5.64274 | opp_overlap 2770817 2770819 2770837, overlap 2770819 TGATCGACAAAAAAA CCTTTGGTTGGA TAGCGC CCCAACCACATG TTGTCCATTACTGTA TERM 3035 2770908 - 2770928 + g 74 -6.9 -4.30448 | overlap 2770921 CCATCGAAACACCCT GTTCTAATG CTT CTTTAGAAC TTTTAAATTCAATTT YPN_2472 2772391 - 2771399 - | galactose-binding protein TERM 3036 2771435 - 2771457 + g 76 -3.4 -5.14698 | opp_overlap 2771436, overlap 2771436 ATTATCTTTATCAAC ACCTACGTAT GGA ATACGTACGA TTTTGTTTTCAATTT YPN_2473 2774305 - 2773139 - | hypothetical protein TERM 3037 2773527 - 2773515 - G 80 -4.7 -5.14965 | overlap 2773516 ACTTGTAGCAAAAAA CCCGC CCA GCGGT AATCCCAACCGACAT TERM 3038 2773526 - 2773516 - G 70 -8.2 -3.68256 | overlap 2773515 CTTGTAGCAAAAAAC CCGC CCA GCGG TAATCCCAACCGACA TERM 3039 2773905 - 2773891 - G 70 -10 -3.30418 | overlap 2773889 2773887 CACCGATCAAATAGA GTACCG CGC CGGTAC GTAATAAGCTGGCTG folE 2775064 - 2774360 - | GTP cyclohydrolase I TERM 3040 2775084 - 2775112 + r 93 -13.3 -2.84 | opp_overlap 2775061, overlap 2775081 CGGGTCACACCCGAA TTTCGCTCTCACT CTA ATTGAGAGCGAAA TGATTATCCAGTGAT YPN_2475 2776357 - 2775206 - | hypothetical protein TERM 3041 2775982 - 2775942 - G 79 -11.7 -3.19824 | overlap 2775940 2775962 2775964 2775965 CCACTAATGAATATA CCGGCACCCGGCCCGGC AAATACG GCCGCACTGAGCGCCGG ACGGCCAAAATGTGC YPN_2476 2776493 - 2777362 + | LysR family transcriptional regulator TERM 3042 2777749 - 2777759 + G 72 -8.2 -3.87815 | overlap 2777757 GTTAGTGCGGATTGT CGCC AGT GGCG TTTGTCACACTGACG YPN_2477 2777636 - 2778775 + | alcohol dehydrogenase TERM 3043 2778835 - 2778880 + G 76 -12.5 -2.67925 | opp_overlap 2778852, overlap 2778835 2778838 GAAGAGCATCGGATG TTTGGCTGCTGGCAACAGCGC TACC GCCATGCTGCCAGCAGCCTGA ATTGTCATATGACCT TERM 3044 2778835 - 2778881 + G 75 -10.9 -3.47345 | gap 1, opp_overlap 2778852, overlap 2778835 2778838 GAAGAGCATCGGATG TTT-GGCTGCTGGCAACAGCGC TACC GCCATGCTGCCAGCAGCCTGAA TTGTCATATGACCTT TERM 3045 2778838 - 2778877 + G 91 -16.4 -2.6252 | opp_overlap 2778852, overlap 2778835 2778835 GAGCATCGGATGTTT GGCTGCTGGCAACAGCGC TACC GCCATGCTGCCAGCAGCC TGAATTGTCATATGA YPN_2478 2778796 - 2779638 + | esterase TERM 3046 2779678 - 2779691 + F 95 -8.1 -5.10461 | opp_overlap 2779674 CACATAAAACCCCAA GCCCT TTCG AGGGC TTTTTATTCGATAGA TERM 3047 2780068 - 2780050 - f 71 -4.6 -4.58698 | CGAAATTAAAAATAA TACCCTAC ACA GTAAGATA ACGGCATGGAGTTGG TERM 3048 2780461 - 2780451 - g 100 -5.4 -5.81622 | ACAAAATGAAAAAAA CATC AAA GATG TCGCCTACGCTTTAC TERM 3049 2781164 - 2781174 + G 73 -5.4 -4.72272 | CTAATTATCAATTAC TGAC AGA GTCA TTTTTCATCGCAACA TERM 3050 2781572 - 2781553 - g 76 -5.8 -4.72272 | TTTGGTTATGAAAAA GAAAATGT CGTG ACATTTCC ACTAAGCGATGAATT TERM 3051 2781851 - 2781837 - g 78 -5.8 -4.76041 | opp_overlap 2781837 TACACCCAGTAAAAA TGATAA TAC TTATCA TGCTATAGCGACAAA YPN_2479 2780191 - 2782551 + | hypothetical protein YPN_2480 2782553 - 2783815 + | hypothetical protein YPN_2481 2783817 - 2784485 + | ABC transporter ATP-binding protein YPN_2482 2784495 - 2785805 + | heme-binding protein TERM 3052 2785800 - 2785829 + F 72 -9.3 -3.11687 | opp_overlap 2785798 TATCTGGCAGATATT CGTTGAAGCCACA TCAT TATGGCGTCAACG TTGCCTCATGATTCA TERM 3053 2785965 - 2785953 - f 74 -6.3 -4.56775 | ATGTGTTGGTAAAAA CATTG TTG CAATG AAAGTTATATTGAAG TERM 3054 2786186 - 2786161 - f 100 -11.3 -4.34345 | TATATACGATGAAAA TGATACTGCTC GTAA AAGCAGTATCA AGCCATCTCATTTTT YPN_2483 2786340 - 2787614 + | molybdopterin biosynthesis protein MoeA YPN_2484 2787616 - 2788386 + | molybdopterin biosynthesis protein MoeB TERM 3055 2789704 - 2789725 + G 77 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPN_2485 2788522 - 2789730 + | transposase for the IS285 insertion element TERM 3056 2789757 - 2789769 + T 100 -7.7 -5.5762 | TTACACAGAATTATG GACAG GCT CTGTC TTTTTTATATTTGCT YPN_2486 2790427 - 2789774 - | hypothetical protein TERM 3057 2790611 - 2790629 + r 100 -8.8 -5.8187 | opp_overlap 2790611 GAAGACATAAAAAAA GCTGACGC ATA GCATCAGC TTTTTTTGTTAGGTC TERM 3058 2790629 - 2790611 - R 100 -11 -5.80248 | opp_overlap 2790611 GAAGACATAAAAAAA GCTGACGC ATA GCATCAGC TTTTTTTGTTAGGTC YPN_2487 2792418 - 2790655 - | ABC transporter ATP-binding protein TERM 3059 2792455 - 2792429 - H 73 -3.6 -5.02502 | GACATGACAGAAAAA TCGTGCCATCAA AGC TCGCAGACACGA CGTTTTACCTATATA TERM 3060 2793053 - 2793043 - g 82 -4 -5.28166 | overlap 2793052 GAAAATCAACAAAAA CATT ATA AATG CTGAGACCCAACATA TERM 3061 2793121 - 2793136 + G 76 -3.2 -5.18371 | AGAACGCTATAACGC CTCAAC AACA GCTGAG TTTTATTTTGTCGAA YPN_2488 2792933 - 2793556 + | hypothetical protein TERM 3062 2793615 - 2793664 + T 81 -10.8 -3.27923 | gap 1, opp_overlap 2793620, overlap 2793619 2793624 TGGTGTTAATACAGT TTAAAGGTCGCGCTC-CAGCAGG ATCAC CCCGCTGTGAGCGCTATCATTAA TTAATAATATTCAAA TERM 3063 2793659 - 2793620 - T 90 -11.4 -3.66883 | gap 1, opp_overlap 2793619 2793615 2793624 TTAATACAGTTTAAA GGTCGCGCTC-CAGCAGGA TCA CCCCGCTGTGAGCGCTATC ATTAATTAATAATAT TERM 3064 2793624 - 2793655 + T 93 -12.3 -2.97613 | gap 1, opp_overlap 2793620, overlap 2793619 2793615 TACAGTTTAAAGGTC GCGCTC-CAGCAGG ATCAC CCCGCTGTGAGCGC TATCATTAATTAATA YPN_2489 2795135 - 2793768 - | hypothetical protein TERM 3065 2794496 - 2794481 - G 79 -9 -4.19817 | GTGAGGCAGGTAAAA CCACCT GAAC AGGTGG CGGGGCCGGTTCGCT TERM 3066 2795029 - 2795045 + g 71 -5 -4.56702 | opp_overlap 2795024 2795021, overlap 2795031 CAATCAACATCCGGG CGGGCC GGGTG GGCCAG TTTATTTAATTCACC YPN_2490 2795612 - 2795160 - | hypothetical protein YPN_2491 2796292 - 2795612 - | hypothetical protein YPN_2492 2797253 - 2796168 - | hypothetical protein YPN_2493 2798980 - 2797217 - | hypothetical protein TERM 3067 2798275 - 2798298 + gr 83 -11.8 -2.82516 | gap 1, opp_overlap 2798273 2798268 2798277, overlap 2798277 GATAACCACTGAACG CACTGTCGGCC TTC GGCC-ACAGTG TATCCTGCTCCCCGA YPN_2494 2799656 - 2799201 - | hypothetical protein TERM 3068 2799330 - 2799314 - G 71 -6.5 -4.254 | overlap 2799305 TCAATACTGAACAAA CTCCAGA GGC TCTGGTG AGCATAAATGCTTGT YPN_2495 2800729 - 2799671 - | hypothetical protein YPN_2496 2802348 - 2800747 - | hypothetical protein TERM 3069 2801488 - 2801514 + g 70 -11.4 -2.54523 | TTGTACGCGATATTC CGGGCGCGGCGG TAC CAGCCGGGTCCG TCCGTTCACATCTAA TERM 3070 2801609 - 2801627 + g 74 -6.6 -4.371 | opp_overlap 2801579, overlap 2801595 2801579 2801622 CCCTGCGGCTGGTTG CGCAGGTA TTT TGCCAGCG TTTTGGTCTGATCGA YPN_2497 2805814 - 2802392 - | hypothetical protein TERM 3071 2803415 - 2803436 + g 74 -6.5 -4.42653 | overlap 2803418 CGTTTGCAGGCTCAG CGAGCTGTC CGAC GACAGCCTG TTTTGTGCATCGCCT TERM 3072 2803860 - 2803875 + g 76 -6 -4.61199 | overlap 2803859 CAGTCAATTTCTTCG CGGCGG GAGG CCACCG TTTTATCTATCGCCT TERM 3073 2804120 - 2804108 - G 71 -10.5 -3.14344 | opp_overlap 2804107 2804104 CACCTGGCTGATCAA CCCGG TAT CCGGG GTAATTTTCCAGTCC TERM 3074 2804277 - 2804316 + g 73 -5 -4.60487 | TCGGCTTTTTCCGGG CGGGCCATCATCAGATAA GCCT TTAACTGGTCATAGCCTG TTTTTGCCCGTGCTG TERM 3075 2804331 - 2804343 + g 70 -10.5 -3.01791 | GTTTTTGCCCGTGCT GCCCG TTG CGGGC TGTTGGCGGGCAGCT YPN_2498 2807043 - 2805811 - | hypothetical protein TERM 3076 2806883 - 2806866 - G 86 -9.1 -4.44915 | GAACCAGCCAGAAAA CCACCGG GATA CCGATGG CAAACCACCAGAACT YPN_2499 2807873 - 2808046 + | IS630 orf YPN_2500 2808155 - 2808475 + | transposase YPN_2501 2808606 - 2808743 + | transposase YPN_2502 2809678 - 2809208 - | hypothetical protein TERM 3077 2809442 - 2809456 + g 72 -3.6 -4.75518 | CAAAGAGTTTGGGGA CTTTAT ATT GTAAAG TTTTAATTTTATATA YPN_2503 2812034 - 2809851 - | hypothetical protein TERM 3078 2810405 - 2810389 - G 76 -2.9 -5.09426 | GTTAATTGCAAAAAA CCGCG CCCATAC CACGG GTAATACCAAATATT TERM 3079 2810547 - 2810527 - G 84 -2.5 -5.55664 | opp_overlap 2810527 2810531, overlap 2810530 2810531 GCATTACCAAAAAAA CAGGCCATT CGG AATGGTGTG TTGATTAAATATTTT TERM 3080 2811852 - 2811836 - G 91 -6.5 -5.09895 | overlap 2811838 2811839 GACGTACTGAAAAAA CAGTGCC GTC GGCAATG GCACGCACTTGCTCC YPN_2504 2812310 - 2812050 - | hypothetical protein YPN_2505 2813237 - 2812464 - | hypothetical protein YPN_2506 2815465 - 2813234 - | hypothetical protein YPN_2507 2817898 - 2815550 - | hypothetical protein YPN_2508 2820543 - 2817901 - | ATPase subunit of ATP-dependent protease TERM 3081 2819810 - 2819833 + g 71 -6 -4.40561 | overlap 2819806 GCGGTTTTCCCCACA CCCGGTTC ACCCACCA GAATCGGG TTGTTTTTACGGCGG TERM 3082 2820725 - 2820706 - R 100 -9.2 -5.72118 | opp_overlap 2820704, overlap 2820707 AAAAAACACAAAAAA GCAGGCGG CGAA CCGCCTGA AGTTGATGACAACGT TERM 3083 2820724 - 2820707 - R 100 -12.7 -3.9778 | opp_overlap 2820704, overlap 2820706 AAAAACACAAAAAAG CAGGCGG CGAA CCGCCTG AAGTTGATGACAACG YPN_2509 2821422 - 2820931 - | hypothetical protein YPN_2510 2823162 - 2821426 - | OmpA-family membrane protein TERM 3084 2822075 - 2822045 - G 77 -10.4 -3.61398 | GCTTTCGGGGAATAA TCCGTCATCGCCAC GCT GTGGTACTGACGGA TATCAAAGGCCACCC YPN_2511 2823848 - 2823162 - | membrane protein TERM 3085 2823558 - 2823541 - G 74 -2.6 -5.09225 | overlap 2823542 2823543 AGGGTATTGAAAAAA TGCGCC TGTAAG GGCGAA TGGCACCACACGAAG YPN_2512 2825197 - 2823845 - | hypothetical protein YPN_2513 2826747 - 2825209 - | hypothetical protein TERM 3086 2826708 - 2826730 + g 71 -6.3 -4.34402 | gap 1, overlap 2826709 TATTCTTTAATACGG TCGT-CGCAG TACC CTGCGCACGG TTTTCCTGTACAGAC YPN_2514 2827296 - 2826796 - | hypothetical protein TERM 3087 2827711 - 2827736 + r 82 -4.8 -5.41143 | opp_overlap 2827713, overlap 2827713 AGGAATTTGGGAAGT GATTTGTAGG AATTCG CCTACAAATA TTTTTTTCAGAAATG TERM 3088 2827713 - 2827734 + r 75 -7.4 -4.34482 | opp_overlap 2827713, overlap 2827711 GAATTTGGGAAGTGA TTTGTAGG AATTCG CCTACAAA TATTTTTTTCAGAAA YPN_2515 2829133 - 2828285 - | acyl transferase YPN_2516 2829480 - 2829232 - | acyl carrier protein YPN_2517 2830006 - 2829518 - | hypothetical protein YPN_2518 2830833 - 2830045 - | short-chain dehydrogenase YPN_2519 2831612 - 2830836 - | polyketide biosynthesis enoyl-CoA hydratase YPN_2520 2832309 - 2831590 - | enoyl-CoA hydratase TERM 3089 2832024 - 2832014 - G 70 -3.2 -4.87592 | CTAGACAGAATAAAA TCGA CAA CCGA CAGTAAGGCAAGCCC YPN_2521 2833540 - 2832302 - | putative hydroxymethylglutaryl-coenzyme A synthase TERM 3090 2832678 - 2832690 + g 74 -4.1 -5.03715 | opp_overlap 2832678 AAAATGCTGCCACAA TAGGT CGC GCCTA TTTTTTGCGCGTAAT YPN_2522 2834302 - 2833556 - | beta-ketoacyl-(acyl-carrier-protein) reductase TERM 3091 2834300 - 2834287 - G 74 -2.4 -5.07486 | CACCGCTAATAAAAA GGTT CATGTT AACC ATGATATCGACTAAA YPN_2523 2835578 - 2834295 - | beta-ketoacyl-(acyl-carrier-protein) synthase TERM 3092 2835356 - 2835338 - G 71 -5.2 -4.56597 | TCGTCTGTTTAAAAA CCTTCTCG GCA CGGGAAAG AACTATATCGGGAAT YPN_2524 2836092 - 2835568 - | putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase YPN_2525 2836676 - 2836356 - | hypothetical protein TERM 3093 2837808 - 2837798 - g 74 -6.8 -4.28548 | AGGGATTGACCAAAA CAGC AGC GCTG GAGGTTGCGACTACT YPN_2526 2837305 - 2838051 + | short-chain dehydrogenase YPN_2527 2838205 - 2840622 + | oxidoreductase TERM 3094 2840645 - 2840664 + T 91 -10.6 -4.08064 | CTCAGCGCCTTATCT CCCCGCCC TGAA GGACGGGG TTTTACGGCGAACTT YPN_2528 2842036 - 2841056 - | hypothetical protein YPN_2529 2842500 - 2842222 - | hypothetical protein YPN_2530 2842869 - 2842507 - | hypothetical protein TERM 3095 2842741 - 2842716 - G 70 -3.1 -4.77775 | overlap 2842718 ATCGGATAAAATAAA GGTTGTCAGGG TCTG CCCAGCCAAAC CATGGAAGTGTTGTA TERM 3096 2843043 - 2843031 - R 75 -2 -5.29782 | opp_overlap 2843031 TATATCCATAAAAAA TACT TCGTG AGTA TATATTGGATATATA YPN_2531 2843520 - 2843233 - | transposase YPN_2532 2844268 - 2844597 + | sulfite reductase subunit protein YPN_2533 2844927 - 2844649 - | acylphosphatase TERM 3097 2844771 - 2844792 + g 70 -9.5 -3.33162 | gap 1 GACGTTCAACTGCTT GTGGATTGCC GCT GGCAA-CCAC TTCTACGCTACCATC TERM 3098 2846137 - 2846162 + G 73 -10.5 -3.2964 | gap 1, opp_overlap 2846127 GAGCAGTTCCGCCAA GCTGCGGATCAC CCA GTGATC-GCGGC TTATCCAGAAGGTTT YPN_2534 2845021 - 2846211 + | hypothetical protein YPN_2535 2846272 - 2846589 + | hypothetical protein TERM 3099 2846633 - 2846663 + T 100 -9.7 -5.00616 | overlap 2846634 TGATTGCCAGGTTCG CCACCCTGTGAGC AGCAC GCTGACAGGGTGC TTTTTTAGAAAGCCC TERM 3100 2846634 - 2846662 + T 100 -13.2 -3.60048 | overlap 2846633 GATTGCCAGGTTCGC CACCCTGTGAGC AGCAC GCTGACAGGGTG CTTTTTTAGAAAGCC YPN_2536 2847114 - 2846698 - | hypothetical protein YPN_2537 2847430 - 2848110 + | hypothetical protein mgsA 2848289 - 2848753 + | methylglyoxal synthase TERM 3101 2848787 - 2848758 - T 86 -11.5 -3.29187 | gap 1, opp_overlap 2848762, overlap 2848753 2848762 ACCTAAAATAGGTAA CT-CACCCGGTGGT TCA ACCACCGGGTTTAG TATTGAGCATCGCTT TERM 3102 2848782 - 2848762 - T 100 -16.9 -2.58183 | opp_overlap 2848762, overlap 2848753 2848758 AAAATAGGTAACTCA CCCGGTGGT TCA ACCACCGGG TTTAGTATTGAGCAT TERM 3103 2848762 - 2848782 + T 100 -16.9 -3.92592 | opp_overlap 2848753 2848758 2848762 AAAATAGGTAACTCA CCCGGTGGT TCA ACCACCGGG TTTAGTATTGAGCAT helD 2850868 - 2848814 - | DNA helicase IV TERM 3104 2851020 - 2851030 + H 71 -2.4 -5.08824 | opp_overlap 2851007 TAGGCTATCGCTCAG CCAC ATT GCGG TTTTTTCACTCAACG YPN_2540 2851062 - 2851508 + | hypothetical protein TERM 3105 2852941 - 2852963 + G 71 -7.1 -4.19369 | gap 1, opp_overlap 2852943 TATTGAGGGGCAACT CACC-CTGAT TGTG ATCAGTGGTG TTCTGTTTTTTGCGT YPN_2541 2851538 - 2853676 + | hypothetical protein TERM 3106 2853704 - 2853686 - T 84 -11.7 -3.09933 | opp_overlap 2853685 2853686 GCCTAAGGTACCCAA GGGCCAC CCATC GTGGCCC ATTATACGGTTTCAT TERM 3107 2853686 - 2853704 + T 80 -11.7 -2.63747 | opp_overlap 2853686, overlap 2853685 GCCTAAGGTACCCAA GGGCCAC CCATC GTGGCCC ATTATACGGTTTCAT YPN_2542 2854413 - 2853778 - | hypothetical protein TERM 3108 2854513 - 2854494 - H 75 -5.8 -4.68506 | AACTAATTGCAAAAA TACGCAAT ATGG ATTACGTA GCCAAACATAAAATG YPN_2543 2854642 - 2855148 + | SOS cell division inhibitor TERM 3109 2855456 - 2855432 - f 71 -5 -4.62336 | ACGGGAGCGTAAAAA CCTTGGCGAA GAATT TTAACCAAGG GCTTAGCTTTTAAAG YPN_2544 2855506 - 2856567 + | outer membrane protein A TERM 3110 2856605 - 2856589 - f 100 -10.8 -4.56597 | opp_overlap 2856589 TTCTTTCGTGAAAAA CCCCGC GCTAT GCGGGG TTTTTTTTGTGCCCA TERM 3111 2856589 - 2856605 + F 100 -11.5 -5.93809 | opp_overlap 2856589 TTCTTTCGTGAAAAA CCCCGCG CTA TGCGGGG TTTTTTTTGTGCCCA TERM 3112 2856626 - 2856644 + F 100 -16 -3.07307 | opp_overlap 2856626 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3113 2856644 - 2856626 - f 100 -16 -4.36914 | opp_overlap 2856626 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_2545 2856757 - 2857215 + | transposase for the IS1541 insertion element TERM 3114 2857289 - 2857321 + T 100 -11.3 -4.04149 | opp_overlap 2857296, overlap 2857293 2857295 2857296 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATCCTGTGATTC TERM 3115 2857293 - 2857317 + T 100 -9.9 -4.60949 | opp_overlap 2857296, overlap 2857289 2857295 2857296 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATCCTGTG TERM 3116 2857295 - 2857315 + T 100 -12.5 -3.90309 | opp_overlap 2857296, overlap 2857293 2857289 2857296 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATCCTG TERM 3117 2857314 - 2857296 - T 100 -16 -4.8048 | opp_overlap 2857295 2857293 2857289 2857296 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCCT TERM 3118 2857296 - 2857314 + T 100 -16 -2.93101 | opp_overlap 2857296, overlap 2857295 2857293 2857289 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCCT YPN_2546 2857878 - 2857384 - | hypothetical protein TERM 3119 2857764 - 2857776 + g 76 -4.8 -5.0133 | GGCGGGTAATGGCTT CACC TTCAC GGTG TTTTTTGACCAAATA TERM 3120 2858828 - 2858817 - g 76 -5.8 -4.65916 | opp_overlap 2858816 2858817 CCTATTGCAACAAAA GCAG CTCC CTGC CTTATCTGCCGATGC YPN_2547 2858179 - 2859801 + | Lon protease YPN_2548 2859870 - 2860388 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 3121 2860412 - 2860448 + F 79 -6.8 -4.69664 | gap 1, opp_overlap 2860415 2860418, overlap 2860415 AGTCAATGCATTGTA AAATAAGGCGAATATGA TTAA TCATGT-CGCCTTATTG TTTTTACGTGATATA TERM 3122 2860415 - 2860445 + F 87 -8.5 -4.4521 | gap 1, opp_overlap 2860415 2860418, overlap 2860412 CAATGCATTGTAAAA TAAGGCGAATATGA TTAA TCATGT-CGCCTTA TTGTTTTTACGTGAT YPN_2549 2861088 - 2861462 + | hypothetical protein TERM 3123 2861454 - 2861472 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_2550 2861476 - 2862498 + | transposase for insertion sequence IS100 TERM 3124 2862579 - 2862565 - g 77 -11.4 -3.3506 | overlap 2862556 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_2551 2862498 - 2863277 + | transposase/IS protein TERM 3125 2863498 - 2863510 + G 70 -9.1 -3.61232 | opp_overlap 2863496, overlap 2863496 CATTCTTAGTGAATT TGGCC GCT GGCCA TGTTTCTATCAAACA YPN_2552 2863293 - 2864321 + | hypothetical protein TERM 3126 2864364 - 2864332 - T 100 -11.3 -4.72631 | opp_overlap 2864339, overlap 2864336 2864338 2864339 ACTAACGCAATAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3127 2864360 - 2864336 - T 100 -9.9 -4.88795 | opp_overlap 2864339, overlap 2864332 2864338 2864339 ACGCAATAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3128 2864358 - 2864338 - T 100 -12.5 -4.04859 | opp_overlap 2864339, overlap 2864336 2864332 2864339 GCAATAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3129 2864357 - 2864339 - T 100 -16 -3.01288 | opp_overlap 2864339, overlap 2864338 2864336 2864332 CAATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3130 2864339 - 2864357 + T 100 -16 -4.8048 | opp_overlap 2864338 2864336 2864332 2864339 CAATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2553 2864896 - 2864438 - | transposase for the IS1541 insertion element TERM 3131 2865027 - 2865009 - R 100 -16 -3.07307 | opp_overlap 2865009 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3132 2865009 - 2865027 + r 100 -16 -4.37092 | opp_overlap 2865009 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3133 2865066 - 2865048 - R 100 -11.7 -4.48987 | opp_overlap 2865043 2865042 TGGGCACAATGAAAA CCTCCGC CTAAT GCGGAGG TTACCCTTGATAATG YPN_2554 2865261 - 2865094 - | ribosome modulation factor TERM 3134 2865507 - 2865466 - R 70 -5.9 -4.3851 | overlap 2865467 GATATTAAATAGAAA CCCCCTTCCCCTGACAAGA TGAT TATTACCAGAGAAAGAGGA TTAGACTGATTTAGA YPN_2555 2866109 - 2865531 - | lipoprotein protein YPN_2556 2867785 - 2866106 - | paraquat-inducible protein B YPN_2557 2869031 - 2867745 - | paraquat-inducible protein A YPN_2558 2871073 - 2869160 - | ABC transporter ATPase component TERM 3135 2869297 - 2869277 - G 77 -9.1 -4.07568 | opp_overlap 2869296, overlap 2869281 GTGTGGGCGGGAAAA GAAATCAGT ATC ACTGACTTC AGCCTGTAACTTGCT TERM 3136 2869293 - 2869281 - G 76 -6.3 -4.64861 | overlap 2869277 GGGCGGGAAAAGAAA TCAGT ATC ACTGA CTTCAGCCTGTAACT YPN_2559 2873199 - 2871079 - | 23S rRNA m(2)G2445 methyltransferase TERM 3137 2872184 - 2872196 + g 71 -6.2 -4.30576 | AGTGACAGACGCCAG CCGC CAAAT GCGG TTTTCATCATACGGC YPN_2560 2873302 - 2874411 + | iron-sulfur binding protein YPN_2561 2874988 - 2874437 - | hypothetical protein TERM 3138 2874714 - 2874699 - G 76 -7.6 -4.36914 | GGTTGCTGTACAAAA TGCCAA CTTT TTGGCA TGAGTGGTTTCAAGA YPN_2562 2876181 - 2875171 - | dihydroorotate dehydrogenase 2 YPN_2563 2879405 - 2876790 - | aminopeptidase N TERM 3139 2879292 - 2879305 + g 74 -3.7 -5.03314 | TTTTACTTTACTGAC CGCCG TTAC CGTCG TTTTTTGCGCATCCA TERM 3140 2879558 - 2879541 - H 93 -4.1 -5.76949 | CAGTTGTAAAAAAAA CCTAGAT GAGA ACCCAGG CAACTCCGGCAAATA TERM 3141 2881039 - 2881024 - g 85 -7.6 -4.77036 | GCGCATTATGAAAAA TTGGGT ATTG ACCCAA TGAAAAAGGTATTGG YPN_2564 2880106 - 2881326 + | nicotinate phosphoribosyltransferase asnC 2881825 - 2883225 + | asparaginyl-tRNA synthetase TERM 3142 2883259 - 2883289 + F 100 -9.8 -5.09426 | opp_overlap 2883262 2883267, overlap 2883260 2883262 2883267 AACGTCAATTTGTAC AAATAAAAGCCAGC TCT GCTGGCTTTTATCA TTTTTTAAAATTCGA TERM 3143 2883260 - 2883288 + F 100 -13.3 -3.64933 | opp_overlap 2883262 2883267, overlap 2883259 2883262 2883267 ACGTCAATTTGTACA AATAAAAGCCAGC TCT GCTGGCTTTTATC ATTTTTTAAAATTCG TERM 3144 2883262 - 2883286 + F 100 -15.9 -3.39328 | opp_overlap 2883262 2883267, overlap 2883260 2883259 2883267 GTCAATTTGTACAAA TAAAAGCCAGC TCT GCTGGCTTTTA TCATTTTTTAAAATT TERM 3145 2883286 - 2883262 - f 100 -15.9 -3.89614 | opp_overlap 2883260 2883259 2883262 2883267, overlap 2883267 GTCAATTTGTACAAA TAAAAGCCAGC TCT GCTGGCTTTTA TCATTTTTTAAAATT TERM 3146 2883267 - 2883281 + F 100 -11.4 -4.76171 | opp_overlap 2883267 2883262, overlap 2883262 2883260 2883259 TTTGTACAAATAAAA GCCAGC TCT GCTGGC TTTTATCATTTTTTA TERM 3147 2883281 - 2883267 - f 100 -11.4 -4.99043 | opp_overlap 2883262 2883260 2883259 2883267, overlap 2883262 TTTGTACAAATAAAA GCCAGC TCT GCTGGC TTTTATCATTTTTTA YPN_2566 2883523 - 2884605 + | outer membrane porin C protein TERM 3148 2884652 - 2884671 + F 100 -10 -5.48623 | opp_overlap 2884652 CCTAAGTTGAAAAAA GACAGGGC CTCG GCTCTGTC TTTTTGTTTCTATTT TERM 3149 2884671 - 2884652 - f 95 -7.8 -5.09426 | opp_overlap 2884652 CCTAAGTTGAAAAAA GACAGGGC CTCG GCTCTGTC TTTTTGTTTCTATTT TERM 3150 2884717 - 2884733 + F 73 -5.1 -4.62336 | overlap 2884690 2884689 AGATTACTCTGTCTA TCGGC CTATTTT GCCGA TTTTTCACCTCAGAT TERM 3151 2885279 - 2885266 - g 70 -2.3 -5.04325 | GCCAAACCATAAAAA CGTCT TCGA AGCCG CAGGGCTGGAAGTGG YPN_2567 2884847 - 2886052 + | aromatic amino acid aminotransferase TERM 3152 2886107 - 2886090 - T 100 -11.3 -4.4767 | opp_overlap 2886093 TGACTGACCATAAAA GGATGGC CCAA GCCATCC TTCAGACTGCTGACA TERM 3153 2886197 - 2886171 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2886180, overlap 2886172 2886187 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3154 2886198 - 2886172 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2886180, overlap 2886171 2886187 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3155 2886303 - 2886272 - T 100 -14.6 -2.77013 | opp_overlap 2886279, overlap 2886279 CACTTTGTCAATAAC CTCAAAAGGATGGC CCAA GCCATCCTTTTGAC TGGTCACTCGATGAC TERM 3156 2886279 - 2886296 + T 100 -11.3 -4.21462 | opp_overlap 2886272 2886279 TCAATAACCTCAAAA GGATGGC CCAA GCCATCC TTTTGACTGGTCACT TERM 3157 2886296 - 2886279 - T 100 -11.3 -4.24123 | opp_overlap 2886279, overlap 2886272 TCAATAACCTCAAAA GGATGGC CCAA GCCATCC TTTTGACTGGTCACT TERM 3158 2886382 - 2886353 - T 74 -7.9 -3.94482 | opp_overlap 2886354 2886360, overlap 2886355 2886360 ATAAACGAAAGAGAA CACAAAAGACGCC TTCC GGCATCTTTTGCT ATTGAACATTCATCT TERM 3159 2886380 - 2886355 - T 100 -12.7 -3.53929 | opp_overlap 2886354 2886360, overlap 2886353 2886360 AAACGAAAGAGAACA CAAAAGACGCC TTCC GGCATCTTTTG CTATTGAACATTCAT TERM 3160 2886375 - 2886360 - T 82 -6.8 -4.80729 | opp_overlap 2886354 2886360, overlap 2886355 2886353 AAAGAGAACACAAAA GACGCC TTCC GGCATC TTTTGCTATTGAACA YPN_2568 2887123 - 2886476 - | metallo-beta-lactamase superfamily protein YPN_2569 2887732 - 2887184 - | hypothetical protein TERM 3161 2887984 - 2887971 - R 71 -2.3 -5.08601 | opp_overlap 2887982 TTATTGCAATAAAAA CTCAG CCTG CTGTG AGATTTGTGCACCAG YPN_2570 2889812 - 2887956 - | hypothetical protein TERM 3162 2890022 - 2889990 - R 100 -11.3 -5.26918 | opp_overlap 2889997, overlap 2889996 2889997 AGATGTTACAAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3163 2890016 - 2889996 - R 100 -12.5 -4.17307 | opp_overlap 2889997, overlap 2889990 2889997 TACAAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3164 2889997 - 2890015 + r 100 -16 -4.8048 | opp_overlap 2889997 2889996 2889990 ACAAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3165 2890015 - 2889997 - R 100 -16 -3.07944 | opp_overlap 2889997, overlap 2889996 2889990 ACAAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2571 2890554 - 2890096 - | transposase for the IS1541 insertion element TERM 3166 2890685 - 2890667 - R 100 -16 -3.07307 | opp_overlap 2890667 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3167 2890667 - 2890685 + r 100 -16 -4.37092 | opp_overlap 2890667 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3168 2890725 - 2890706 - R 90 -7.1 -5.18726 | opp_overlap 2890706 TGGGCACAATAAAAA TGGCCGC TTCTGT GCGACCA TTTAATAAAACTAAT mukB 2895227 - 2890770 - | cell division protein MukB TERM 3169 2891833 - 2891847 + g 72 -8.5 -3.82603 | TCACGGCGGTGCAAG CGGCG CTCAA CGCCG TTATCTTTCACCATT TERM 3170 2894582 - 2894572 - G 71 -6.8 -4.20367 | overlap 2894573 TCTGGCAATAAATAA TCGC GTA GCGA GCGAGTAATGGCGCT YPN_2573 2895952 - 2895224 - | condesin subunit E YPN_2574 2897255 - 2895933 - | condesin subunit F YPN_2575 2898037 - 2897252 - | putative metallothionein SmtA TERM 3171 2897667 - 2897635 - G 70 -4.2 -4.7373 | gap 1, opp_overlap 2897635 2897639, overlap 2897638 2897639 2897648 TTAGCGTATCAAAAA GTATTTGCAGAACCT GCTG AGGTTCAGC-AATCC ATTCTAATACCGCAT TERM 3172 2897756 - 2897770 + g 70 -4.2 -4.7373 | overlap 2897758 TTGTATAAATTGCAT GTTGTG GCT CACACC TTTTTCGTGAGCTGC YPN_2576 2899742 - 2898810 - | hypothetical protein TERM 3173 2900045 - 2900021 - R 100 -12.1 -4.15703 | opp_overlap 2900017 GGTTAGAAATAACAA CGCCAGAGCCC GGT AGGTTCTGGCG TAAAGTTTCCGTCGC YPN_2577 2900818 - 2900066 - | 3-deoxy-manno-octulosonate cytidylyltransferase YPN_2578 2900997 - 2900815 - | hypothetical protein TERM 3174 2901519 - 2901539 + r 100 -12.6 -3.90112 | opp_overlap 2901519 ACGAGAAGGGAGAAA CGGCTACC GATGA GGTAGCCG TTTGCTTAGAAAGCG TERM 3175 2901539 - 2901519 - R 100 -12.6 -4.00468 | opp_overlap 2901519 ACGAGAAGGGAGAAA CGGCTACC GATGA GGTAGCCG TTTGCTTAGAAAGCG YPN_2579 2901754 - 2901545 - | cold shock-like protein TERM 3176 2901870 - 2901885 + H 71 -4.6 -4.70046 | opp_overlap 2901871, overlap 2901871 TGATTTTATGAAAAA ACCGCA TAAT TGCGGG TTTTGTAATTTTGTC TERM 3177 2901884 - 2901871 - H 95 -8.1 -5.15634 | opp_overlap 2901870 2901871 GATTTTATGAAAAAA CCGCA TAAT TGCGG GTTTTGTAATTTTGT TERM 3178 2901913 - 2901935 + H 74 -4.3 -4.93877 | gap 1 GTCTATCTTGGTGAA TGATTA-GCA CGCT TGCATAATCA TTTTATTTCCTGAGA TERM 3179 2903866 - 2903835 - g 76 -11 -3.18681 | gap 1, overlap 2903839 2903840 CTGCAACTCTACGAA GCA-ACCCAGCAACG TTC CGTTGCTGAATGTGC AGCCGCCCTCAAACT TERM 3180 2903861 - 2903839 - g 75 -10.6 -3.40639 | overlap 2903835 2903840 AACTCTACGAAGCAA CCCAGCAACG TTC CGTTGCTGAA TGTGCAGCCGCCCTC TERM 3181 2903860 - 2903840 - g 73 -11.9 -2.63901 | overlap 2903839 2903835 ACTCTACGAAGCAAC CCAGCAACG TTC CGTTGCTGA ATGTGCAGCCGCCCT YPN_2580 2902473 - 2903900 + | hypothetical protein lpxK 2904894 - 2903908 - | tetraacyldisaccharide 4'-kinase TERM 3182 2904700 - 2904710 + g 71 -6.8 -4.19238 | opp_overlap 2904699 TTCAACCAACCAGAT CACC ACC GGTG TTTTACCGTTCCCCC YPN_2582 2906639 - 2904891 - | lipid transporter ATP-binding/permease protein TERM 3183 2906093 - 2906077 - G 74 -6.5 -4.33274 | CTGATATTACGAAAA CGTTTGG ATA CCAGACG GATCGAAATAGACAC TERM 3184 2906325 - 2906303 - G 70 -2.7 -4.78326 | GGTCAAAGAAAGAAA CAGGCATAC CCATC ATATGGCTG AATAAGCGGCGGCGG YPN_2583 2908966 - 2906675 - | hypothetical protein TERM 3185 2909467 - 2909448 - R 100 -7.1 -5.81412 | opp_overlap 2909448 TTTACGCAAAAAAAA CGATGCC GATAAG GGCACCG TTTCGTATCAGCGTT ihfB 2909797 - 2909513 - | integration host factor subunit beta rpsA 2911531 - 2909858 - | 30S ribosomal protein S1 cmk 2912397 - 2911705 - | cytidylate kinase TERM 3186 2912206 - 2912189 - G 72 -4.1 -4.86731 | TTCTGTGAAACAAAA CGAACAT CGAG ATGTGCG GCAAGTGGTACCAAT TERM 3187 2912417 - 2912460 + r 76 -11.2 -2.59881 | opp_overlap 2912422 2912453, overlap 2912416 CTCTCCTTTCGGTAG GCAAACCTCT-TGTCTGCCC CCGGCA GGGCAGACACAGAGGTA-GC ATTATACGCTGCATC TERM 3188 2912456 - 2912422 - R 100 -15.9 -3.64703 | gap 1, opp_overlap 2912417 2912416, overlap 2912453 CTTTCGGTAGGCAAA CCTCT-TGTCTGCCCC CGGC AGGGCAGACACAGAGG TAGCATTATACGCTG YPN_2587 2913996 - 2912710 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 3189 2914164 - 2914117 - R 73 -9.8 -3.02511 | overlap 2914162 CTCATTGTTGCAAGA GGCCCATCGATCCGGAGCGGAT GAGT ACCCGCTCCAGAAAAATCAGCC ATGGCGGCGTTCAAA YPN_2588 2915244 - 2914159 - | phosphoserine aminotransferase TERM 3190 2915495 - 2915509 + r 71 -8.6 -3.56568 | opp_overlap 2915495 GACTGGGGTGACAAA TCTGCT GGG AGCAGA TTTGAACGCTGCTTG TERM 3191 2915509 - 2915495 - R 75 -8.6 -3.86015 | opp_overlap 2915495 GACTGGGGTGACAAA TCTGCT GGG AGCAGA TTTGAACGCTGCTTG YPN_2589 2917458 - 2915611 - | hypothetical protein YPN_2590 2918573 - 2917479 - | hypothetical protein TERM 3192 2917534 - 2917513 - G 76 -12.3 -3.0264 | overlap 2917503 AAACCCGCTGCAACA CCGACACCG CCTT CAGTGTCGG CAGAAACATTGACTC TERM 3193 2918830 - 2918803 - R 100 -13.6 -3.53343 | AATGTCTGGCGGAAA TTTTGCGAAGAC CGTA GCCTTCGCAAAA AAGTCACAGTATCAA ansB 2919879 - 2918842 - | L-asparaginase II TERM 3194 2920661 - 2920648 - g 86 -8.1 -4.62069 | GCGTTATGTGAAAAA CCGCA TTAT TGCGG AGTCCATCAGCTTGC YPN_2592 2920028 - 2921794 + | hypothetical protein YPN_2593 2922491 - 2923348 + | formate transporter TERM 3195 2923826 - 2923812 - g 76 -2.8 -5.1925 | overlap 2923804 CCACAACTGAAAAAA GTCTTC ACC GAATAC CGTAAAACACATAAC YPN_2594 2923404 - 2925686 + | formate acetyltransferase 1 TERM 3196 2925740 - 2925720 - T 90 -11.1 -3.97088 | opp_overlap 2925720 TGTTACAACATGAAA GGCTCCACA TAT TGTGGGGCC TTTATTCATTCAGAG TERM 3197 2925720 - 2925740 + T 100 -13.3 -4.3255 | opp_overlap 2925720 TGTTACAACATGAAA GGCTCCACA TAT TGTGGGGCC TTTATTCATTCAGAG YPN_2595 2926478 - 2925804 - | hypothetical protein pflA 2927465 - 2928199 + | pyruvate formate lyase-activating enzyme 1 TERM 3198 2928273 - 2928311 + T 83 -11.2 -3.43033 | gap 3, opp_overlap 2928276 2928277, overlap 2928277 TTAGGTTTGGCCTAA CAACTGCCGCCATGCTGGA TGAA TCC-GC-TGGCGGC-GTTG TCTTATATATTGATA TERM 3199 2928277 - 2928308 + T 81 -9.5 -3.83668 | gap 2, opp_overlap 2928276 2928277, overlap 2928273 GTTTGGCCTAACAAC TGCCGCCATGCTGGA TGAA TCC-GC-TGGCGGCG TTGTCTTATATATTG YPN_2597 2928916 - 2928353 - | major facilitator transporter TERM 3200 2929023 - 2929041 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_2598 2929045 - 2930067 + | transposase for insertion sequence IS100 TERM 3201 2930148 - 2930134 - g 77 -11.4 -3.3506 | overlap 2930125 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_2599 2930067 - 2930846 + | transposase/IS protein YPN_2600 2931460 - 2930897 - | membrane protein TERM 3202 2931648 - 2931626 - R 95 -4.9 -5.76633 | gap 1, opp_overlap 2931631, overlap 2931631 GGATACACAAAAAAA GAAAAGCGCC CGTA GACGCTTT-C GAAATAGCAGATAAC TERM 3203 2931644 - 2931631 - R 95 -5.9 -5.61277 | opp_overlap 2931631, overlap 2931626 CACAAAAAAAGAAAA GCGCC CGTA GACGC TTTCGAAATAGCAGA YPN_2601 2933023 - 2931731 - | seryl-tRNA synthetase TERM 3204 2932513 - 2932525 + g 73 -9.1 -3.72576 | GAGCACGGTGCATAC GGGCA ATT TGCCC TTTCATCACCACAAA TERM 3205 2932589 - 2932579 - G 70 -8.2 -3.71672 | opp_overlap 2932578 2932579 CGGCAGCAAAATCAA GGCC ACC GGCC ATTTCGCCCAGAGAA TERM 3206 2933252 - 2933276 + r 93 -9.9 -4.39828 | opp_overlap 2933241 2933240 2933264 TAATGCTAACCTTAC CGCAACCGCAA AGC TAGCGGTAGCG TTTTATCGGGCTATT YPN_2602 2934608 - 2933265 - | recombination factor protein RarA TERM 3207 2933614 - 2933597 - G 73 -6.3 -4.44046 | CGCAGGCTAAATAAA CAATTGC CTGG GCAATCG CCCGCTCCCCTTCGG TERM 3208 2934561 - 2934544 - G 80 -10.5 -3.6715 | opp_overlap 2934542 TGATCCAACGTCAAA GGCCGCA TACG CGCGGCC AGTGGTTGAAACTCA lolA 2935227 - 2934619 - | outer-membrane lipoprotein carrier protein YPN_2604 2939337 - 2935420 - | cell division protein TERM 3209 2937352 - 2937333 - G 83 -10 -4.14004 | opp_overlap 2937345 CAACATAAGGAGAAA GCGTGAAC AGAG GCTCACGC GGGCTGTCATCGACT TERM 3210 2937673 - 2937643 - G 70 -9.1 -3.57144 | gap 1, opp_overlap 2937660 2937662, overlap 2937644 2937659 TTGCTGATCGGCAAA CGCTTTGC-GCAAG ATAG CCTGCTGCAAAGCA GCATCTTCATCAGAT TERM 3211 2937836 - 2937867 + g 71 -5 -4.54026 | opp_overlap 2937834, overlap 2937840 2937855 GTTGGAATACGAACC GGATTTGGCCGTGG CAAT TCAGGGCCAATACC TTGTTTTATTTGGGA TERM 3212 2938580 - 2938545 - G 72 -3.9 -4.77165 | GGGCTGAGAACAAAA CGTCATCATCGCCAT GGGCTA ACGCCGATGAGGCCG CAACACCCGCCCCCA TERM 3213 2939107 - 2939097 - G 71 -6.8 -4.13767 | TTGCGTAGGCTAAAA CACC AAA GGTG GAAAACAGCGTGTCA TERM 3214 2939402 - 2939376 - R 100 -15.2 -3.14463 | opp_overlap 2939372, overlap 2939379 AACGGGTCTGAGCAA CAACGCCGAGAA GCC TCCCCGGCGTTG AAACTGTATGAATAA TERM 3215 2939399 - 2939379 - R 84 -11.1 -3.71848 | opp_overlap 2939372, overlap 2939376 GGGTCTGAGCAACAA CGCCGAGAA GCC TCCCCGGCG TTGAAACTGTATGAA YPN_2605 2939954 - 2939460 - | leucine-responsive transcriptional regulator TERM 3216 2939641 - 2939658 + g 70 -4.2 -4.65895 | GAGACCAAGTGACAC TCTTGA ATTTCC TCAAGA TTTTTAACTGCGGCA TERM 3217 2940634 - 2940654 + H 90 -4 -5.59357 | opp_overlap 2940634 CCTATCAAAAAAATT GCTAACAA CATTT TTGTTTGC TTTTTTTAATGTCAT TERM 3218 2940830 - 2940814 - g 70 -8 -3.66178 | opp_overlap 2940807 CGTGCCAACCTGAAA CCGGTA TTGAT TACCGG GATGGAAAAGGGCGG YPN_2606 2940721 - 2941683 + | thioredoxin reductase TERM 3219 2941741 - 2941765 + F 100 -9.2 -5.53079 | overlap 2941742 TTCACCTCGTTCTAT ACGGGTGGCT ACATG GGCCACCCGC TTTTTTATCTGTTTT TERM 3220 2941742 - 2941764 + F 100 -12.7 -3.88187 | overlap 2941741 TCACCTCGTTCTATA CGGGTGGCT ACATG GGCCACCCG CTTTTTTATCTGTTT TERM 3221 2942202 - 2942191 - g 87 -7.2 -5.04249 | overlap 2942193 GGCTGAAAAAACAAA GCGC CCCC GCGC AACGTTGGCTCCGCC TERM 3222 2942989 - 2943010 + G 78 -3.7 -5.19212 | gap 1, overlap 2942990 2942990 TTGGTAGCTATGGCC TCGGCGTAAC GCT GTT-TGCCGG TTTTTTGGTGCTAAT TERM 3223 2943742 - 2943720 - g 73 -9 -3.72893 | CAGTTGGTGATGAAA GCGCTGGAGG AGG CCTCCCGTGC GCAGTCTACCCTGCT YPN_2607 2942142 - 2943908 + | cysteine/glutathione ABC transporter membrane/ATP-binding component YPN_2608 2943911 - 2945635 + | cysteine/glutathione ABC transporter membrane/ATP-binding component aat 2945854 - 2946564 + | leucyl/phenylalanyl-tRNA--protein transferase infA 2946730 - 2946948 + | translation initiation factor IF-1 TERM 3224 2947007 - 2947032 + T 100 -13.3 -4.36778 | overlap 2947024 GTAGTCCCCCTCCGG CGCCCTTCCCA TTTA TGGCAAGGGCG TTTTGCGTTATCTTT TERM 3225 2947242 - 2947218 - T 88 -9.9 -4.15788 | opp_overlap 2947221, overlap 2947220 2947221 AACGTTGGCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3226 2947240 - 2947220 - T 100 -12.5 -3.6761 | opp_overlap 2947221, overlap 2947218 2947221 CGTTGGCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3227 2947239 - 2947221 - T 100 -16 -2.80244 | opp_overlap 2947221, overlap 2947220 2947218 GTTGGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3228 2947221 - 2947239 + T 100 -16 -4.8048 | opp_overlap 2947221 2947220 2947218 GTTGGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2611 2947778 - 2947320 - | transposase for the IS1541 insertion element TERM 3229 2947909 - 2947891 - R 100 -16 -3.07307 | opp_overlap 2947891 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3230 2947891 - 2947909 + r 100 -16 -4.37092 | opp_overlap 2947891 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3231 2947957 - 2947930 - R 100 -10.7 -5.18726 | gap 1, opp_overlap 2947930 TGGGCACAATAAAAA GGGCGATACGCT GTTTT AGC-TATCGCCC TTTATTTTACTGGAT TERM 3232 2947930 - 2947957 + r 100 -11.4 -4.7261 | gap 1, opp_overlap 2947930 TGGGCACAATAAAAA GGGCGATACGCTG TTT TAGC-TATCGCCC TTTATTTTACTGGAT clpA 2950347 - 2948071 - | ATP-dependent Clp protease ATP-binding subunit TERM 3233 2950366 - 2950378 + r 71 -4.8 -4.58395 | CACCTCCCAATAATT GCCT TAATC AGGC TTTTTCCAGCGTACA clpS 2950693 - 2950373 - | ATP-dependent Clp protease adaptor protein ClpS TERM 3234 2950615 - 2950638 + g 76 -6 -4.73432 | gap 1, opp_overlap 2950615 2950620 GTATCACTTTATACA TCGAAGGCGGT TGA AGCGCCT-CGA TTTGTTTATCTTTGA TERM 3235 2951087 - 2951101 + G 82 -8.6 -4.44046 | opp_overlap 2951086 2951087 AAATGGTTCAACAAC GCCAAA GGT TTTGGC TTTATTTGCCCTGAG YPN_2614 2951054 - 2951317 + | cold shock-like protein TERM 3236 2951420 - 2951453 + T 100 -11.2 -4.63007 | opp_overlap 2951426, overlap 2951426 TACCTGTACTTTGAT TCAAAATGCCAGTC AATGAC GACTGGCATTTTTA TTTTATCTACTTCTA TERM 3237 2951447 - 2951426 - T 93 -10.9 -4.18494 | opp_overlap 2951420 2951426 TACTTTGATTCAAAA TGCCAGTCA ATGA CGACTGGCA TTTTTATTTTATCTA TERM 3238 2951426 - 2951447 + T 100 -10.2 -5.58522 | opp_overlap 2951426, overlap 2951420 TACTTTGATTCAAAA TGCCAGTC AATGAC GACTGGCA TTTTTATTTTATCTA YPN_2615 2953547 - 2951598 - | macrolide transporter ATP-binding /permease protein YPN_2616 2954659 - 2953547 - | macrolide transporter subunit MacA YPN_2617 2954692 - 2954868 + | hypothetical protein YPN_2618 2954896 - 2955843 + | virulence factor YPN_2619 2957647 - 2955980 - | hypothetical protein TERM 3239 2956235 - 2956218 - G 78 -2.6 -5.24129 | GCGCGGTATAAAAAA TGCTCC ATATCG GGTGCA GGCAAAATTGTTAGG TERM 3240 2956798 - 2956810 + g 83 -9.1 -4.42238 | GGGCATGAGGATCGA GGCTC AGT GAGCC TTTTGCTTGCAATAA TERM 3241 2957322 - 2957336 + g 76 -5.7 -4.72201 | opp_overlap 2957322 ACTCGATAGTAGATA CGATG TAACC CATCG TTATTTTTTATCCAC YPN_2620 2958000 - 2958896 + | hypothetical protein TERM 3242 2958927 - 2958939 + F 76 -6.9 -4.44548 | overlap 2958921 CAGTCGCCCCCCCCC GCCCT CTG GGGGC TTTTCCTTCCCTATA TERM 3243 2959292 - 2959304 + G 70 -3.3 -4.83615 | overlap 2959288 CCAAATTGACAGCTT TGCCC CCA GAGCA TTTTTCTCAACGCTG YPN_2621 2959098 - 2960750 + | hydroxylamine reductase TERM 3244 2960765 - 2960799 + F 76 -10 -3.39288 | overlap 2960763 2960795 AGTTAATTATACCTT GCCTGGTCAATCGC CTTTCTC GCCGTTGACCGGGC TATTATTGCACGCTG YPN_2622 2960864 - 2961886 + | HCP oxidoreductase, NADH-dependent TERM 3245 2963559 - 2963574 + G 70 -9 -3.58343 | opp_overlap 2963570 CTCTGAGTTAAATGC GGCACT GGAA AGTGCC TTTGCACATCCTGGC YPN_2623 2962030 - 2963751 + | pyruvate dehydrogenase YPN_2624 2963858 - 2964067 + | hypothetical protein YPN_2625 2964064 - 2965119 + | L-threonine aldolase YPN_2626 2965116 - 2966606 + | membrane protein TERM 3246 2966899 - 2966889 - g 71 -6.8 -4.2349 | TCCTCACAGGCAAAA GCCA TGC TGGC GGATGTCGATACGCT YPN_2627 2966706 - 2967713 + | hypothetical protein YPN_2628 2967810 - 2968385 + | putative lipoprotein YPN_2629 2968522 - 2968412 - | hypothetical protein YPN_2630 2968555 - 2969115 + | chorismate mutase TERM 3247 2969146 - 2969174 + F 78 -8.8 -3.89354 | GGCCACACATCTTTC GTACCGGGTTCC TTCCC GTGGCCCGGTAC TTATTGATTTACAAA artP 2969410 - 2970138 + | arginine transporter ATP-binding subunit YPN_2632 2970159 - 2970890 + | arginine-binding periplasmic protein 1 precursor TERM 3248 2970921 - 2970956 + G 82 -10.4 -3.89346 | gap 1, opp_overlap 2970927, overlap 2970922 ATGAATTTCAACCTT TAGCAAGTGCCGCCGGT ATG ACCGTCGGC-CTTGCCG TTTGTGCACTGGCAC TERM 3249 2970922 - 2970955 + G 76 -11.7 -2.93393 | gap 1, opp_overlap 2970927, overlap 2970921 TGAATTTCAACCTTT AGCAAGTGCCGCCGGT ATG ACCGTCGGC-CTTGCC GTTTGTGCACTGGCA YPN_2633 2970902 - 2971330 + | arginine transport system permease protein YPN_2634 2971354 - 2971617 + | ABC arginine transporter, permease subunit artQ artM 2971617 - 2972285 + | arginine transporter permease subunit ArtM TERM 3250 2972312 - 2972346 + T 100 -12.2 -3.90112 | opp_overlap 2972311 2972310 CCTTATGCGACAACG CCGGATCATCAACCAG AAA TTGCGTGATGATCCGG TTTCCTTAACGCCCC YPN_2636 2973320 - 2972475 - | membrane protein YPN_2637 2974717 - 2973317 - | hypothetical protein YPN_2638 2975477 - 2974680 - | hypothetical protein TERM 3251 2974723 - 2974736 + gr 70 -8.1 -3.73775 | opp_overlap 2974721 2974722 ATAAGGTCATAAAGC CCGGT GGTC ACCGG TTTACTGGCGGTGCG YPN_2639 2976250 - 2975465 - | transport ATP-binding protein TERM 3252 2975528 - 2975538 + g 70 -8.2 -3.70919 | CAATAAGTAGCGATA GCCC AAA GGGC TTGTTCCACTTTCGA YPN_2640 2977149 - 2976247 - | FecCD transport family protein YPN_2641 2978394 - 2977303 - | periplasmic binding protein TERM 3253 2977457 - 2977446 - G 70 -3 -4.89393 | CAAACTGCACAAAAA TGTA GTCG TACA ACGTGCGGACGCCGC TERM 3254 2977659 - 2977638 - G 72 -3.7 -4.82901 | CGCCCGCCAGAAAAA TTACCTCGG GTTT CTGAGATAA CACATACTCTGCGCG TERM 3255 2978777 - 2978742 - R 100 -11.8 -5.35459 | opp_overlap 2978738 ACAGATGATAAAAAA GCCCACTACACCACGA ATCT CCATGGGGAAGTGGGC TTCAGATTTATTGAT YPN_2642 2979732 - 2978806 - | SPFH domain-containing protein TERM 3256 2980101 - 2980085 - H 71 -6.7 -4.21974 | opp_overlap 2980067, overlap 2980068 2980067 TTATCATTTAACAAA TGATAAT GAA ATTATCA CCATGCTAATACCAG YPN_2643 2980551 - 2981282 + | hypothetical protein rumB 2982539 - 2981409 - | 23S rRNA methyluridine methyltransferase TERM 3257 2981954 - 2981966 + g 73 -9.1 -3.67597 | opp_overlap 2981949, overlap 2981951 CCTGATTAAACCGCT CAGGC AGG GCCTG TTGTTCGGTCAGCGG TERM 3258 2982520 - 2982505 - G 82 -10.4 -3.83226 | opp_overlap 2982505 AACCACTGACAAGAA CGGCAG CGAC CTGCCG TATACTGTGCGCAAT YPN_2645 2983087 - 2982623 - | hypothetical protein TERM 3259 2983178 - 2983155 - R 100 -15.4 -3.30124 | overlap 2983158 TGTTATCTCTCACAA TAACGCCGCT CTAA AGCGGCGTTA AAGGAGACGAAAGAC TERM 3260 2983175 - 2983158 - R 100 -12.7 -3.7941 | overlap 2983155 TATCTCTCACAATAA CGCCGCT CTAA AGCGGCG TTAAAGGAGACGAAA YPN_2646 2984057 - 2983212 - | putrescine ABC transporter membrane protein YPN_2647 2985019 - 2984054 - | putrescine ABC transporter membrane protein potG 2986177 - 2985044 - | putrescine transporter ATP-binding subunit YPN_2649 2987457 - 2986348 - | putrescine ABC transporter periplasmic substrate-binding protein TERM 3261 2986836 - 2986826 - G 71 -6.8 -4.25458 | opp_overlap 2986831 AACTTCAGCAATAAA TCCG TCG CGGA GCCCGTGTAATCGGC TERM 3262 2987115 - 2987128 + g 70 -2.3 -4.98857 | opp_overlap 2987116, overlap 2987116 TGACCAGCGCCAGTA ACTCG GGGT CGAGA TTTTTCTCATTCGGT TERM 3263 2987916 - 2987880 - R 71 -5 -4.74013 | gap 1, opp_overlap 2987882 2987883 2987885, overlap 2987882 2987883 CGTAAATAGAGAAAA TAG-CCGCGTGCCGCTG ATAT CTGCGGCACACTGTCTT TATTCGGACACGTTC TERM 3264 2987913 - 2987882 - R 74 -7.8 -3.97364 | opp_overlap 2987882 2987883 2987885, overlap 2987880 2987883 TAAATAGAGAAAATA GCCGCGTGCCGCTG ATAT CTGCGGCACACTGT CTTTATTCGGACACG TERM 3265 2987883 - 2987912 + r 75 -9.1 -3.6761 | opp_overlap 2987883 2987882 2987880, overlap 2987882 2987885 AAATAGAGAAAATAG CCGCGTGCCGCTG ATAT CTGCGGCACACTG TCTTTATTCGGACAC TERM 3266 2987912 - 2987883 - R 83 -11.3 -2.96792 | opp_overlap 2987882 2987883 2987885, overlap 2987882 2987880 AAATAGAGAAAATAG CCGCGTGCCGCTG ATAT CTGCGGCACACTG TCTTTATTCGGACAC TERM 3267 2987885 - 2987910 + r 80 -10.3 -3.41738 | opp_overlap 2987883 2987882 2987880, overlap 2987883 2987882 ATAGAGAAAATAGCC GCGTGCCGCTG ATAT CTGCGGCACAC TGTCTTTATTCGGAC YPN_2650 2988460 - 2987975 - | hypothetical protein TERM 3268 2988553 - 2988579 + r 76 -9.5 -3.41013 | TCCCGACTAATTTGA TATCTGGGCCG TTCCT CGGCTTAGATA TTCTCAATGTGCTTA YPN_2651 2988916 - 2988602 - | hypothetical protein TERM 3269 2989543 - 2989530 - g 76 -4.5 -5.03314 | overlap 2989541 2989542 CTGATCTGGAAAAAA CGGTC GGTA AACCG GTTGAAACCGTGCCA grxA 2989379 - 2989642 + | glutaredoxin 1 TERM 3270 2989683 - 2989699 + F 100 -12.3 -4.70887 | opp_overlap 2989683 GCATTTATCCGATAA GGGTGTC CAA GACACCC TTTCTTTATTGCTGG TERM 3271 2989699 - 2989683 - f 95 -12.3 -3.33492 | opp_overlap 2989683 GCATTTATCCGATAA GGGTGTC CAA GACACCC TTTCTTTATTGCTGG TERM 3272 2990557 - 2990574 + G 74 -7.7 -4.18197 | CCCTGACTTATCTTA TCGGGCT GGTT AGCCTGA TTTTAGGTGCGCGCT YPN_2653 2990052 - 2991740 + | hypothetical protein TERM 3273 2992770 - 2992782 + G 90 -9.1 -4.73613 | opp_overlap 2992770 GTTTCGGTCAAATAA TGCGC GGG GCGCA TTTTCTTACTCATAA TERM 3274 2992782 - 2992770 - g 75 -9.1 -3.90744 | opp_overlap 2992770 GTTTCGGTCAAATAA TGCGC GGG GCGCA TTTTCTTACTCATAA YPN_2654 2992073 - 2992888 + | hypothetical protein YPN_2655 2992918 - 2993493 + | undecaprenyl pyrophosphate phosphatase TERM 3275 2993519 - 2993543 + F 100 -15.1 -2.91264 | GTATTCGCTTCACAC TTGCCGGTTAG TCT CTGACCGGCAA TCTCTCCATGCGCCC YPN_2656 2993751 - 2994422 + | deoxyribose-phosphate aldolase TERM 3276 2994563 - 2994590 + F 100 -11.4 -4.36554 | ATTTTGTCAGTAGTC TAAGCCCGGT CCACAATT ACCGGGCTTA TTTATTATCGTACTG YPN_2657 2994652 - 2995416 + | DNA-binding transcriptional repressor DeoR TERM 3277 2995576 - 2995589 + F 70 -3.9 -4.83615 | opp_overlap 2995576 CGCTATGTTGGCAAA TAATC CATA GATTA TTTTTATACAGAATC TERM 3278 2997285 - 2997306 + G 78 -9.5 -3.82486 | opp_overlap 2997287 GAGCTTTGCCCACAT CATGATGGT TATC ACCGTCATG TTCTTCGTCTTCAGT TERM 3279 2997632 - 2997618 - g 74 -10 -3.59979 | TGTCGCGACCTTAAA CCCAAG TAT CTTGGG GATGATCGAAACATT YPN_2658 2996515 - 2997816 + | serine transporter TERM 3280 2997853 - 2997885 + T 90 -5.6 -5.54403 | gap 1, overlap 2997855 CGTTTGATTAACCGC T-CCAGGCTGGCC ACTTCCAC GGCCAGCCTGTTA TTTTTCTTCTTTTTT TERM 3281 2997855 - 2997882 + T 100 -14.2 -4.74161 | overlap 2997853 TTTGATTAACCGCTC CAGGCTGGCC ACTTCCAC GGCCAGCCTG TTATTTTTCTTCTTT TERM 3282 2998086 - 2998141 + T 100 -14.3 -4.60255 | opp_overlap 2998093 2998104, overlap 2998093 2998104 CTGTAGCTTATCCCC TGAGAAACATCCTAAAAAGCGCGAT AGTCAC ATCGCGCTTTTTAGGATGTTATGGA TTTTTAAGGACTTAT TERM 3283 2998134 - 2998093 - T 100 -24.1 -3.86346 | opp_overlap 2998086 2998093 2998104, overlap 2998104 TTATCCCCTGAGAAA CATCCTAAAAAGCGCGATA GTCA CATCGCGCTTTTTAGGATG TTATGGATTTTTAAG TERM 3284 2998093 - 2998134 + T 100 -23.4 -3.5616 | opp_overlap 2998093 2998104, overlap 2998086 2998104 TTATCCCCTGAGAAA CATCCTAAAAAGCGCGAT AGTCAC ATCGCGCTTTTTAGGATG TTATGGATTTTTAAG TERM 3285 2998123 - 2998104 - T 100 -10 -4.6856 | opp_overlap 2998093 2998086 2998104, overlap 2998093 GAAACATCCTAAAAA GCGCGATA GTCA CATCGCGC TTTTTAGGATGTTAT TERM 3286 2998104 - 2998123 + T 100 -9.3 -4.67556 | opp_overlap 2998104 2998093, overlap 2998093 2998086 GAAACATCCTAAAAA GCGCGAT AGTCAC ATCGCGC TTTTTAGGATGTTAT YPN_2659 2999461 - 2998256 - | D-alanyl-D-alanine carboxypeptidase TERM 3287 2998718 - 2998692 - G 84 -10.9 -4.08887 | opp_overlap 2998704 ACCACGGAAATCAAA CGCATCGGC CCATCTGTC GCCGATGCG ACCAAATTATACCCC YPN_2660 3000467 - 2999796 - | ABC transport integral membrane subunit TERM 3288 3000265 - 3000253 - G 71 -5.5 -4.55625 | AGTAACACCACAAAA GGCAT TGA ACGCC CCACATTGACCAGTG YPN_2661 3001450 - 3000464 - | ABC transport ATP-binding subunit TERM 3289 3000547 - 3000522 - G 70 -9.1 -3.54307 | gap 1 AACACTTCGGCTAAA TTCAACCCGCCC TCT GGACG-GTTGAA ATCAACGTGCAAGCG YPN_2662 3002271 - 3001447 - | hypothetical protein YPN_2663 3003566 - 3002499 - | iron/ascorbate oxidoreductase family protein TERM 3290 3002677 - 3002652 - G 75 -10.5 -3.494 | CAATGCGGCAGATAA TGGATACAGTG GCAC CACCGCATCCA AACGCGCACCTAAAA TERM 3291 3003144 - 3003175 + g 71 -7.2 -3.99324 | CCATTGGTTCGGGCC TTGCAGCCGTGTCC AACT GGGTGCGCCTGCGA TTTGTGGTAATGGGG TERM 3292 3004427 - 3004439 + G 75 -10.5 -3.37622 | CGCGAAACACTTTGC CGCCG ATA CGGCG TTATCAATCGGTGTT YPN_2664 3004053 - 3004703 + | hydrolase YPN_2665 3004857 - 3005477 + | glutathione S-transferase-family protein TERM 3293 3005572 - 3005522 - T 85 -9.3 -4.07885 | gap 1, overlap 3005523 CATTGCTGGTCAAAA TCCCGAATCACTTACTTATT-TTA AAGT CAACAACCAGTAAGTGATTCGGGT AAGTGCGCTCAGCTA TERM 3294 3005571 - 3005523 - T 95 -12.8 -3.04517 | gap 1, overlap 3005522 ATTGCTGGTCAAAAT CCCGAATCACTTACTTATT-TTA AAGT CAACAACCAGTAAGTGATTCGGG TAAGTGCGCTCAGCT YPN_2666 3007744 - 3005747 - | putative outer membrane receptor TERM 3295 3006402 - 3006414 + g 71 -10.5 -3.04398 | opp_overlap 3006400 3006401, overlap 3006401 TTACCCAGAATAAGT GCGGG AAG CCCGC CTTTTCCCCCACCAG TERM 3296 3006878 - 3006861 - G 71 -5.7 -4.3534 | opp_overlap 3006873, overlap 3006873 GTTGAATTACCAAAA TCATAAT AACC ATTATGA GTAACCGCATAATTA YPN_2667 3008792 - 3008004 - | siderophore ABC transporter, ATP-binding subunit YPN_2668 3009871 - 3008789 - | FecCD-family membrane transport protein TERM 3297 3008972 - 3008958 - G 78 -6.4 -4.8622 | overlap 3008959 GCTGGTAAGTAAAAA CGGTGA TCT TCACCA AAAATCATGCGTGCG YPN_2669 3011211 - 3010066 - | periplasmic substrate-binding transport protein TERM 3298 3011275 - 3011261 - R 70 -5.8 -4.26832 | overlap 3011269 TAACAATAAAGCAAA TGATAA TAC TTATCA ATAAGATTGCCATAA TERM 3299 3011417 - 3011378 - R 100 -17.4 -3.51924 | gap 1, opp_overlap 3011368 3011380 3011388 TGTTCACGGATAGAA TG-CGCCAATACCAGCACA TTT CGTACTGGTATTGGCGTCA GTTACCGCTAATTTA TERM 3300 3011380 - 3011414 + r 100 -17.3 -2.53382 | opp_overlap 3011378, overlap 3011368 3011388 TTCACGGATAGAATG CGCCAATACCAGCAC ATTTC GTACTGGTATTGGCG TCAGTTACCGCTAAT TERM 3301 3011466 - 3011447 - R 100 -12.2 -4.01902 | opp_overlap 3011447 ATAGGCACTAAAGAA GGGCGATA GCGT TATCGCCC TTTCATCCGCACGTT TERM 3302 3011447 - 3011466 + r 93 -12.2 -3.73072 | opp_overlap 3011447 ATAGGCACTAAAGAA GGGCGATA GCGT TATCGCCC TTTCATCCGCACGTT YPN_2670 3013008 - 3011497 - | lysine transporter TERM 3303 3012093 - 3012077 - G 73 -8.7 -3.79419 | opp_overlap 3012077 3012076 CCCGCCGATAAAACA GCGGTCA AAA TAACCGC ATTCATCACTGCCGC YPN_2671 3014138 - 3013266 - | putative DNA-binding transcriptional regulator TERM 3304 3013412 - 3013379 - G 84 -13.3 -3.44334 | gap 1, opp_overlap 3013389, overlap 3013393 GTAAAGGAATATTAA GCTCGACCAACTCACC GCT GGCGAGTTGATC-AGC AATCACTCGCCGCGA YPN_2672 3014796 - 3015884 + | hypothetical protein TERM 3305 3015948 - 3015971 + F 100 -13.2 -3.75332 | overlap 3015951 CTAAAACAAACCGTT TAAGGGCCGT ATCC GCGGCCCTTA TTTCCCTTCACCGCT TERM 3306 3015951 - 3015968 + F 89 -10.5 -4.0098 | overlap 3015948 AAACAAACCGTTTAA GGGCCGT ATCC GCGGCCC TTATTTCCCTTCACC TERM 3307 3016572 - 3016562 - g 86 -8.2 -4.67608 | opp_overlap 3016561 3016562 GAGTGGAAGATAAAA GCCG CGT CGGC GTCTGTATTGATACC YPN_2673 3016048 - 3016905 + | endonuclease IV TERM 3308 3016939 - 3016915 - T 100 -11.4 -4.4715 | overlap 3016917 TTGTAACGTAGAAAA TGCCCGCCAG TAAAC CTGGCGGGAA TTGAACCTGACGGGA TERM 3309 3016937 - 3016917 - T 93 -14 -2.56203 | overlap 3016915 GTAACGTAGAAAATG CCCGCCAG TAAAC CTGGCGGG AATTGAACCTGACGG YPN_2674 3019463 - 3016992 - | outer membrane usher protein PsaC precursor TERM 3310 3018775 - 3018763 - G 73 -3.3 -5.00884 | overlap 3018764 ATGCTGTCGAAAAAA TCACC TGG GGTGT AACTCTCCCCTAAGG YPN_2675 3020368 - 3019547 - | chaperone protein PsaB precursor TERM 3311 3019665 - 3019653 - G 72 -4.1 -4.90079 | ACCGGAATAATAAAA TCCCT AGA AGAGA ATGGCGGAACATAGC TERM 3312 3019667 - 3019685 + g 88 -3.8 -5.68438 | ATCCCTAGAAGAGAA TGGCGG AACATAG CTGCCA TTTTTTATTTCATCC TERM 3313 3020429 - 3020395 - R 95 -14 -2.84192 | opp_overlap 3020387 CACATTATCATGATA TTTTATTGTGAATTTT AAA AAAACTCACAATAAAA CATCAATAACAAAAA TERM 3314 3020486 - 3020445 - R 89 -6.7 -5.31855 | opp_overlap 3020448 3020449 3020451, overlap 3020447 3020449 CATCAATAACAAAAA CATACATAGAACATGACAG CAAG CCATCATGTTCTATGATTA CTCGTTATTTAAAAT TERM 3315 3020483 - 3020447 - R 86 -9 -4.27297 | gap 1, opp_overlap 3020448 3020449 3020451, overlap 3020445 3020449 TCAATAACAAAAACA TACATAGAACATGACAG CAAG CCATCATGTTCTATG-A TTACTCGTTATTTAA TERM 3316 3020449 - 3020482 + r 71 -9.7 -2.60492 | opp_overlap 3020447 3020445 3020449, overlap 3020448 3020451 AATAACAAAAACATA CATAGAACATGACAG CAAG CCATCATGTTCTATG ATTACTCGTTATTTA TERM 3317 3020482 - 3020449 - R 100 -14.1 -3.70836 | opp_overlap 3020449 3020448 3020451, overlap 3020447 3020445 AATAACAAAAACATA CATAGAACATGACAG CAAG CCATCATGTTCTATG ATTACTCGTTATTTA YPN_2676 3020971 - 3020495 - | pH 6 antigen precursor (antigen 4) (adhesin) YPN_2677 3022016 - 3021516 - | hypothetical protein TERM 3318 3021614 - 3021642 + g 80 -4.5 -5.08831 | opp_overlap 3021613, overlap 3021616 3021626 TGACATCAATAAAGC CTCTGTCACCATT AAA AAAGGTGACAACG TTATTTTTTTTATTA YPN_2678 3022645 - 3022001 - | regulatory protein TERM 3319 3022214 - 3022193 - G 82 -6.7 -4.77036 | TCCTACCATGAAAAA TATGATGAT GATG ACCATCATA ATAGCGATAAAAAAG TERM 3320 3022784 - 3022807 + r 71 -8.4 -3.53224 | opp_overlap 3022782 3022793, overlap 3022782 GCACAAGATTAAGTC TTATTAAGAT TATT ATCTTAATAA TTTAACAAAAAAATA TERM 3321 3022911 - 3022886 - R 100 -13.4 -5.30686 | opp_overlap 3022886 AACACCCATAAAAAA TGCCAGTCAG AATTAA CTGACTGGCA TTTCAGACTGCTGAC TERM 3322 3022886 - 3022911 + r 100 -13.4 -3.58343 | opp_overlap 3022886 AACACCCATAAAAAA TGCCAGTCAG AATTAA CTGACTGGCA TTTCAGACTGCTGAC YPN_2679 3024670 - 3022970 - | fructose-specific PTS system IIBC component fruK 3025623 - 3024685 - | 1-phosphofructokinase TERM 3323 3025506 - 3025526 + g 79 -6.8 -4.59853 | CGTTGATCCCTTTAC CCGCCG CATGCAGAC CGGCGG TTTTTACCAGATTGA YPN_2681 3026753 - 3025620 - | bifunctional fructose-specific PTS IIA/HPr protein YPN_2682 3027015 - 3027470 + | Mut family protein YPN_2683 3028581 - 3027583 - | ABC transport integral membrane subunit TERM 3324 3027870 - 3027856 - G 78 -3.5 -5.08601 | gap 1 CGATGCCAACAAAAA GCCAGC AAGT GC-GGC AAGGAACCCTGAAAT YPN_2684 3030191 - 3028617 - | ABC transport ATP-binding subunit TERM 3325 3029124 - 3029137 + g 74 -8.1 -4.07687 | opp_overlap 3029124 AATGCCAATATTGAA GGCCA TGCG TGGCC TTTTCGGCAGAGCCT TERM 3326 3030036 - 3030057 + g 70 -2.9 -4.8083 | gap 1, opp_overlap 3030039, overlap 3030036 3030038 3030039 GGTCGTCACGCCGCA C-AAGGCCTG CAC CGGGCCATAG TTTTTGCTGATATTC YPN_2685 3031388 - 3030300 - | periplasmic carbohydrate-binding transport protein YPN_2686 3032214 - 3031504 - | ribose 5-phosphate isomerase YPN_2687 3033787 - 3032234 - | carbohydrate kinase TERM 3327 3033262 - 3033247 - G 71 -6.8 -4.24204 | gap 1, overlap 3033248 CACGTACATCGAAAA GCC-CGG TCC CCGAGGC ATCCGAAACTTCAGT YPN_2688 3035287 - 3033791 - | aldehyde dehydrogenase TERM 3328 3035095 - 3035085 - G 79 -8.2 -4.2828 | overlap 3035086 GCCCAGGCAGGAAAA GCGC GAC GCGC CGCAGCAACCGCCTC YPN_2689 3035639 - 3036781 + | hypothetical protein TERM 3329 3037703 - 3037735 + G 70 -11.1 -2.52464 | opp_overlap 3037695 CTGAAGAGGCCCTAC GGGGACTGCGCGGTG AGC CACTGCGCTGCCCAC TGACTTAAGGAGAAG YPN_2690 3036793 - 3037743 + | D-isomer specific 2-hydroxyacid dehydrogenase family protein TERM 3330 3037909 - 3037931 + G 70 -11.3 -2.62613 | overlap 3037908 3037906 AGGGCTGGCGGCAAC CGGTGCGGA AGTGA TCTGCACCG ATATTTCACGTGAAC YPN_2691 3037754 - 3038569 + | short-chain oxidoreductase YPN_2692 3038892 - 3038638 - | hypothetical protein TERM 3331 3039253 - 3039234 - H 76 -7.8 -4.22375 | opp_overlap 3039238 ACTTAATATAAAGAA GTTACCCG CAGC CGGGTATC TCAGGAGCAATAGAT YPN_2693 3039267 - 3040511 + | tryptophan-specific transport protein YPN_2694 3040615 - 3041187 + | elongation factor P TERM 3332 3041271 - 3041301 + T 100 -14 -3.69482 | opp_overlap 3041280, overlap 3041272 CTATTGGGTCTCTCT ACGTTAAGAGCCGG AAA CCGGCCCTTAACGG TTATCTCTTCACTGA TERM 3333 3041272 - 3041300 + T 100 -17.5 -2.81207 | opp_overlap 3041280, overlap 3041271 TATTGGGTCTCTCTA CGTTAAGAGCCGG AAA CCGGCCCTTAACG GTTATCTCTTCACTG TERM 3334 3041292 - 3041280 - T 76 -10.5 -3.05844 | opp_overlap 3041272 3041271 CTCTCTACGTTAAGA GCCGG AAA CCGGC CCTTAACGGTTATCT YPN_2695 3042520 - 3041327 - | mannonate dehydratase TERM 3335 3041580 - 3041592 + g 85 -7.7 -4.83759 | CCTTGCAAATGCCCC CCTTC ATG GAAGG TTTTTGGATTTCCTT TERM 3336 3042576 - 3042558 - H 71 -3.2 -5.00467 | opp_overlap 3042570, overlap 3042550 GCAACAATAATAAAA TTAACC CGCTAAC GGTTAA AGCCGCCTTTTTCTG TERM 3337 3042858 - 3042870 + H 75 -3.4 -5.23292 | opp_overlap 3042858 CGAATATTATCAATA TTGG ACTTA CCAA TTTTATTTTCTGTCA TERM 3338 3043855 - 3043872 + G 71 -6.9 -4.2123 | GTCGCAGACTCTTGT GGGATCG CCTG CGAACCC TTTATTCAGTGGGTC YPN_2696 3043105 - 3044577 + | D-mannonate oxidoreductase TERM 3339 3044586 - 3044620 + T 89 -11.6 -3.4314 | opp_overlap 3044584 3044587, overlap 3044584 3044587 GGCTTAAGACACACG ACGATGAGCTGAAT CAAGGCT ATTCAGCTCATCGG TATTGTTGGCGTTTA TERM 3340 3044619 - 3044587 - T 100 -15.1 -2.75975 | opp_overlap 3044587 3044586 3044584, overlap 3044584 GCTTAAGACACACGA CGATGAGCTGAAT CAAGGCT ATTCAGCTCATCG GTATTGTTGGCGTTT TERM 3341 3044587 - 3044619 + T 100 -15.1 -2.65161 | opp_overlap 3044584 3044587, overlap 3044586 3044584 GCTTAAGACACACGA CGATGAGCTGAAT CAAGGCT ATTCAGCTCATCG GTATTGTTGGCGTTT YPN_2697 3045464 - 3044721 - | transcriptional regulatory protein TERM 3342 3045607 - 3045579 - R 100 -15.5 -3.89524 | ACTTCAGGTGATAAA TCACGGTTTATCA CGT CGATAAACCGTGA TGCCCAAACATGTTG YPN_2698 3046013 - 3045630 - | hypothetical protein TERM 3343 3046803 - 3046784 - g 70 -4.9 -4.68705 | overlap 3046773 3046770 ACAATGGCAACAAAA GCAGCCA TTATCG CGGCCGC TGTATCATAGCGAAT YPN_2699 3046272 - 3047255 + | cobalamin synthesis protein YPN_2700 3047314 - 3048015 + | hypothetical protein TERM 3344 3048627 - 3048575 - g 75 -9.1 -3.82865 | opp_overlap 3048573 TAAATAATACGCAAA CTGAGATGCGTGCAGTTAATGACAA AGA TGGGCTTTTACTGCAAGCCTCTCAG GATGAATTCGAAGCG TERM 3345 3048845 - 3048835 - g 71 -6.8 -4.1552 | opp_overlap 3048835 GATCTCGGCAAGAAA GTCC AGC GGAC TAAATTACGTCCAGG YPN_2701 3048457 - 3049041 + | putative outer membrane lipoprotein TERM 3346 3049088 - 3049104 + F 100 -8.7 -5.4833 | opp_overlap 3049088 AACCAAACGTTGAAA CGCTGTT TAT GACAGCG TTTTTTATTGGCTCA TERM 3347 3049104 - 3049088 - f 70 -8 -3.65084 | opp_overlap 3049088 AACCAAACGTTGAAA CGCTGT TTATG ACAGCG TTTTTTATTGGCTCA YPN_2702 3049737 - 3051209 + | hypothetical protein YPN_2703 3051291 - 3053099 + | substrate-binding transport protein TERM 3348 3053605 - 3053586 - g 100 -10.7 -5.60993 | opp_overlap 3053585 CTGGGGATAAAAAAA GCGGTGC GCAATG GCACCGC CTTCGATACCTGGAG YPN_2704 3053109 - 3054209 + | ABC transporter integral membrane subunit YPN_2705 3054209 - 3055237 + | ABC transporter integral membrane subunit TERM 3349 3056172 - 3056152 - g 73 -6.1 -4.58663 | opp_overlap 3056171 ACTATGCGCTAAAAA GCCTCAGTT TTG ACCTGAAGC CCGGCGAAAGTCTGG YPN_2706 3055239 - 3056831 + | ABC transporter ATP-binding subunit TERM 3350 3056876 - 3056855 - T 82 -5.8 -4.9792 | TAGCCTAGACAAAAA TGCCCGCG ATAGCA CACGGACA AACAGCTAAAAAGTA YPN_2707 3057236 - 3056892 - | hypothetical protein TERM 3351 3057456 - 3057471 + r 95 -7.6 -5.00412 | CAGAAGCTGTAGATT TGGGAT TCAG ATCCCA TTTTTCGTTATATTT YPN_2708 3057790 - 3057632 - | hypothetical protein YPN_2709 3059402 - 3058203 - | bicyclomycin/multidrug efflux system YPN_2710 3060213 - 3059506 - | 16S rRNA pseudouridylate synthase A TERM 3352 3060769 - 3060779 + G 71 -6.8 -4.17048 | CGAGAAGCGGTCGAT GCCA CGG TGGC TTATTTTCGACGCCA TERM 3353 3061037 - 3061056 + G 73 -5.8 -4.59027 | gap 1, overlap 3061040 CGGTGGCCCGTAATC TGCCGCTAT TTG ATAGCG-CA TTTTCTCTGCTGATT YPN_2711 3060727 - 3062484 + | DEAD box helicase family protein YPN_2712 3062646 - 3062930 + | 50S ribosomal protein L25 TERM 3354 3062991 - 3062967 - T 100 -9.9 -4.42806 | opp_overlap 3062970, overlap 3062969 3062970 GGACGCCGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3355 3062989 - 3062969 - T 100 -12.5 -3.81958 | opp_overlap 3062970, overlap 3062967 3062970 ACGCCGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3356 3062988 - 3062970 - T 100 -16 -2.88452 | opp_overlap 3062970, overlap 3062969 3062967 CGCCGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3357 3062970 - 3062988 + T 100 -16 -4.8048 | opp_overlap 3062970 3062969 3062967 CGCCGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2713 3063527 - 3063069 - | transposase for the IS1541 insertion element TERM 3358 3063658 - 3063640 - R 100 -16 -3.07307 | opp_overlap 3063640 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3359 3063640 - 3063658 + r 100 -16 -4.37092 | opp_overlap 3063640 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3360 3063702 - 3063673 - R 100 -18.1 -3.28712 | opp_overlap 3063673 3063680, overlap 3063680 GTTTTCTGGGCACAA TAAAAAACGCCGC TGAT GCGGCGTTTTTTA TTGGCTAAATACGCA TERM 3361 3063673 - 3063702 + r 100 -18.1 -3.07816 | opp_overlap 3063673 3063680, overlap 3063680 GTTTTCTGGGCACAA TAAAAAACGCCGC TGAT GCGGCGTTTTTTA TTGGCTAAATACGCA TERM 3362 3063695 - 3063680 - R 100 -11.8 -5.55769 | opp_overlap 3063680 3063673, overlap 3063673 GGGCACAATAAAAAA CGCCGC TGAT GCGGCG TTTTTTATTGGCTAA TERM 3363 3063680 - 3063695 + r 100 -11.8 -5.4833 | opp_overlap 3063673 3063680, overlap 3063673 GGGCACAATAAAAAA CGCCGC TGAT GCGGCG TTTTTTATTGGCTAA YPN_2714 3064732 - 3063728 - | nucleoid-associated protein NdpA YPN_2715 3064910 - 3065137 + | hypothetical protein TERM 3364 3066061 - 3066075 + G 71 -5.6 -4.4572 | TTACAGTTCGGGTAA CCGGCA AGA TACCGG TTTATTTGGCCTGTT YPN_2716 3065165 - 3066961 + | membrane protein TERM 3365 3067150 - 3067183 + F 100 -13.3 -3.91144 | opp_overlap 3067148 3067158, overlap 3067153 3067158 GCCGACCAAATACCT CAACAAAACCAATCC ATTC GGGTTGGTTTTGTCG TTTGTGGAGTGTGGC TERM 3366 3067153 - 3067180 + F 100 -13.6 -3.02186 | opp_overlap 3067148 3067158, overlap 3067150 3067158 GACCAAATACCTCAA CAAAACCAATCC ATTC GGGTTGGTTTTG TCGTTTGTGGAGTGT TERM 3367 3067158 - 3067175 + F 86 -7.7 -4.64846 | opp_overlap 3067158 3067148, overlap 3067153 3067150 AATACCTCAACAAAA CCAATCC ATTC GGGTTGG TTTTGTCGTTTGTGG TERM 3368 3067175 - 3067158 - f 73 -5.5 -4.6759 | opp_overlap 3067153 3067150 3067158, overlap 3067148 AATACCTCAACAAAA CCAATCC ATTC GGGTTGG TTTTGTCGTTTGTGG TERM 3369 3067246 - 3067230 - f 72 -9.4 -3.17051 | overlap 3067228 TTGGGATGAGCAAGA GTGCCG GGATG CGGCAC AGCATAATTTCAATG TERM 3370 3067677 - 3067714 + F 87 -8.6 -4.5464 | overlap 3067678 TCACATGCGAGGTTT TTATGTTGGTTCAGTT AGTTCA ATCTGAACCAACATAC TTTTGCTTATATATA TERM 3371 3067678 - 3067713 + F 89 -12.1 -3.317 | overlap 3067677 CACATGCGAGGTTTT TATGTTGGTTCAGTT AGTTCA ATCTGAACCAACATA CTTTTGCTTATATAT YPN_2718 3067932 - 3069080 + | hypothetical protein YPN_2719 3069093 - 3069581 + | hypothetical protein YPN_2720 3069852 - 3069944 + | hypothetical protein TERM 3372 3070519 - 3070534 + G 71 -6.2 -4.34402 | opp_overlap 3070518 TTAAATTAAAAACTG GGATAA TAGG TTATCC TTTTGATATGAAAGA YPN_2721 3070194 - 3070643 + | hypothetical protein TERM 3373 3070723 - 3070702 - T 100 -12.3 -4.8143 | opp_overlap 3070701 3070700 GTAACAAGGTAAAAA CCGCTCACC AAAG GGTGAACGG CCTTCTTGAATTCAA YPN_2722 3072205 - 3070769 - | 6-phospho-beta-glucosidase TERM 3374 3070846 - 3070859 + g 74 -4.5 -4.84359 | AACGCGCCATTGTAC CGGTG CCAT CATCG TTTTTATCGACATAA YPN_2723 3073236 - 3072496 - | LacI-family regulatory protein TERM 3375 3073417 - 3073441 + r 75 -7.2 -4.33621 | gap 1, opp_overlap 3073420, overlap 3073418 3073420 TTCTTTGTAGATAGC TA-ACCGGGCG TAAT TGCCCGGTATA TTTATTAATTCACTG TERM 3376 3073418 - 3073439 + r 72 -7.9 -3.7642 | opp_overlap 3073420, overlap 3073417 3073420 TCTTTGTAGATAGCT AACCGGGCG TAAT TGCCCGGTA TATTTATTAATTCAC TERM 3377 3073437 - 3073420 - R 74 -9.8 -3.15999 | opp_overlap 3073420 3073418 3073417 TTTGTAGATAGCTAA CCGGGC GTAATT GCCCGG TATATTTATTAATTC TERM 3378 3073420 - 3073437 + r 80 -10.5 -3.45532 | opp_overlap 3073420, overlap 3073418 3073417 TTTGTAGATAGCTAA CCGGGCG TAAT TGCCCGG TATATTTATTAATTC YPN_2724 3074313 - 3073534 - | bacteriophage tail fiber protein TERM 3379 3074241 - 3074269 + g 70 -9.5 -3.25942 | opp_overlap 3074223 3074264, overlap 3074240 3074247 TGGGTGGAACGCCAC CGGCGACGTTGCC GTC GGTAAATTCGCCG TTACTGTCGGCGCGT YPN_2725 3074814 - 3074410 - | bacteriophage protein YPN_2726 3075014 - 3074754 - | bacteriophage protein YPN_2727 3076147 - 3075011 - | bacteriophage protein YPN_2728 3076606 - 3076151 - | bacteriophage protein GP46 YPN_2729 3077199 - 3076603 - | bacteriophage (baseplate assembly) protein TERM 3380 3077134 - 3077123 - G 71 -7.2 -4.07568 | overlap 3077124 TTGCTGTCGTCAAAA GCGG TCAC CCGC CCGATCCCCAGCAGC YPN_2730 3078270 - 3077215 - | bacteriophage tail protein YPN_2731 3079673 - 3078267 - | bacteriophage protein TERM 3381 3079728 - 3079715 - R 100 -9.5 -5.4387 | ACAGAAAGTAAAAAA CCCGC TGGA GCGGG TTCGAGGTTATTGAC TERM 3382 3079808 - 3079834 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 3079797, overlap 3079803 3079809 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3383 3079809 - 3079835 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 3079797, overlap 3079803 3079808 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_2732 3081433 - 3079940 - | bacteriophage coat protein YPN_2733 3081853 - 3081554 - | hypothetical protein TERM 3384 3081652 - 3081636 - GH 71 -6.6 -4.10657 | opp_overlap 3081617 TTATAGTCGGTAAAA GCCATT TTCTT AATGGC TTCGCGCGGCACCCC TERM 3385 3081770 - 3081788 + gH 100 -13.2 -3.38316 | AGGTTCGCTGAGTTC GACCACCT CAT AGGTGGTC TTGCTTGCGTCGTGA YPN_2735 3082223 - 3081855 - | hypothetical protein YPN_2734 3081807 - 3082211 + | hypothetical protein TERM 3386 3082196 - 3082206 + gT 73 -8.2 -3.64103 | TGACATACGCCGTAC CCGC CAG GCGG TTTGAAGTATCGCTC YPN_2736 3083753 - 3082245 - | bacteriophage tail sheath protein TERM 3387 3083422 - 3083408 - G 71 -7.8 -4.06633 | TATAAAGTGAAATAA CACCGG TCT CCGATG CCGCCGTATTGATGG YPN_2737 3083944 - 3083750 - | bacteriophage protein YPN_2738 3084596 - 3083949 - | ATP-binding protein YPN_2739 3084902 - 3084612 - | bacteriophage protein TERM 3388 3085024 - 3085008 - R 91 -3.5 -5.85737 | opp_overlap 3085007 3085008 3085015 ACAGCAATAAAAAAA CCCCGTC GAT GCTGGGG CTTCTTATTGTTTAC TERM 3389 3085176 - 3085163 - R 100 -8.1 -6.04953 | ATAGAAACAAAAAAA CCTGC CACA GCAGG AAGTTAATCGGTCTT TERM 3390 3085504 - 3085478 - R 100 -8.1 -5.30189 | gap 1, overlap 3085482 TATAAGATGAAAAAA GACA-GCCACAC CGAA GTGTGGCCTATC ACAGTTAGCTATACA TERM 3391 3085499 - 3085482 - R 90 -11.3 -3.7035 | overlap 3085478 AGATGAAAAAAGACA GCCACAC CGAA GTGTGGC CTATCACAGTTAGCT YPN_2740 3086321 - 3085533 - | hypothetical protein YPN_2741 3087109 - 3086297 - | transcriptional regulatory protein YPN_2742 3087821 - 3087192 - | putative aldolase YPN_2743 3089122 - 3087818 - | hypothetical protein TERM 3392 3089245 - 3089257 + r 74 -4.9 -4.8743 | opp_overlap 3089239, overlap 3089250 TCAATTTAACTTAAT GTTAT TAA ATAAC TTTATTTATTTTAGA YPN_2744 3089812 - 3089333 - | phage antitermination protein Q YPN_2745 3090086 - 3090808 + | prophage repressor protein YPN_2746 3090971 - 3090858 - | hypothetical protein TERM 3393 3090932 - 3090901 - G 70 -3 -4.77122 | overlap 3090875 3090874 3090919 3090923 TTATATAAAAAATAA CCGCCAGTAATT AACCAACA AATCACCTGCGG TAATTTATTTATGCC YPN_2747 3091014 - 3091256 + | stress response protein TERM 3394 3091333 - 3091343 + F 84 -2.6 -5.66989 | opp_overlap 3091333, overlap 3091338 TCAATGAGAAATTAA TTTT TTT AAAA TTTTTTTAATCTTTA YPN_2748 3091428 - 3092363 + | outer membrane protease YPN_2749 3092770 - 3094557 + | methyl-accepting chemotaxis protein YPN_2750 3095620 - 3094631 - | hypothetical protein TERM 3395 3095879 - 3095892 + H 77 -3.9 -5.16841 | opp_overlap 3095883, overlap 3095880 3095883 GCGTCTTCCTCTCAA TTGAT GTAT ATCAA TTTTTATTGATATAC TERM 3396 3095908 - 3095883 - H 76 -10.7 -2.52464 | opp_overlap 3095879 3095883 3095880 CTTCCTCTCAATTGA TGTATATCAAT TTTT ATTGATATACA TGGCTTTCTACGTCG TERM 3397 3095883 - 3095908 + H 76 -10.7 -2.71325 | opp_overlap 3095883, overlap 3095879 3095880 CTTCCTCTCAATTGA TGTATATCAAT TTTT ATTGATATACA TGGCTTTCTACGTCG TERM 3398 3097425 - 3097415 - g 79 -6.8 -4.7373 | overlap 3097416 TGAGCGTATTAAAAA TGGC GGT GCCA TGGCAGATATCCCCG YPN_2751 3096036 - 3097562 + | putative transport protein TERM 3399 3097581 - 3097615 + G 78 -13.6 -2.65388 | opp_overlap 3097567 3097587, overlap 3097587 ATTTCTGGTCGTGAC CACAAACCGCACCGGT CCC GCCAGTGCGGTTTTTG CTTCTCCCTTCCCTG TERM 3400 3097587 - 3097609 + G 100 -11.2 -4.93968 | opp_overlap 3097587, overlap 3097581 GGTCGTGACCACAAA CCGCACCGGT CCC GCCAGTGCGG TTTTTGCTTCTCCCT TERM 3401 3097609 - 3097587 - g 87 -12.7 -3.96148 | opp_overlap 3097581 3097587 GGTCGTGACCACAAA CCGCACCGG TCCCG CCAGTGCGG TTTTTGCTTCTCCCT YPN_2752 3097576 - 3097749 + | hypothetical protein TERM 3402 3098345 - 3098327 - g 73 -3.1 -5.00616 | gap 1 GCGGCCCGCAAAAAA GACC-GGT GTTT ACCTGGCC GACCAAAGATAATCG TERM 3403 3098861 - 3098849 - g 80 -4.7 -5.1101 | opp_overlap 3098849 3098849 GCATTATGCAAAAAA CCGGC GGT GGCGG TGGATTTATTACTTA YPN_2753 3097837 - 3099003 + | beta-lactamase/D-alanine carboxypeptidase TERM 3404 3099106 - 3099094 - T 77 -10.5 -3.22858 | overlap 3099086 3099092 GTAATGAGAGCAATA GCCCG CAC CGGGC ACATGCTGGATAAGC TERM 3405 3099158 - 3099182 + T 85 -7.2 -4.90266 | opp_overlap 3099158 AGAGAAAAGCAAAAA CCCGTTATCT TATTC AGATAACAGG TTTTTAATTGGTGCC TERM 3406 3099182 - 3099158 - T 100 -9.4 -5.15526 | opp_overlap 3099158 AGAGAAAAGCAAAAA CCCGTTATCT TATTC AGATAACAGG TTTTTAATTGGTGCC TERM 3407 3099715 - 3099691 - T 93 -9.9 -4.32177 | opp_overlap 3099694, overlap 3099693 3099694 GTAGCTCACAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3408 3099713 - 3099693 - T 100 -12.5 -3.76219 | opp_overlap 3099694, overlap 3099691 3099694 AGCTCACAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3409 3099694 - 3099712 + T 100 -16 -4.8048 | opp_overlap 3099693 3099691 3099694 GCTCACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3410 3099712 - 3099694 - T 100 -16 -2.85008 | opp_overlap 3099694, overlap 3099693 3099691 GCTCACAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2754 3100251 - 3099793 - | transposase for the IS1541 insertion element TERM 3411 3100364 - 3100382 + r 100 -16 -4.37092 | opp_overlap 3100364 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3412 3100382 - 3100364 - R 100 -16 -3.07307 | opp_overlap 3100364 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3413 3100425 - 3100400 - R 100 -15.5 -3.78934 | opp_overlap 3100404, overlap 3100404 TTCTGGGCACAATAA GAAACGCGGCC GAAT GACCGCGTTTC TCTCAGGACTCACAC TERM 3414 3100404 - 3100421 + r 77 -8.3 -4.0371 | opp_overlap 3100404 3100400 GGGCACAATAAGAAA CGCGGCC GAAT GACCGCG TTTCTCTCAGGACTC TERM 3415 3100421 - 3100404 - R 100 -10.5 -4.51812 | opp_overlap 3100404, overlap 3100400 GGGCACAATAAGAAA CGCGGCC GAAT GACCGCG TTTCTCTCAGGACTC YPN_2755 3101568 - 3100453 - | outer membrane porin protein C TERM 3416 3101951 - 3101965 + H 100 -11.4 -5.626 | TCGTTAATGTTACGA CCGGTC TCT GACCGG TTTTTTTCTCCGGTC YPN_2756 3102671 - 3103825 + | membrane protein TERM 3417 3105019 - 3105005 - g 84 -4.2 -5.31456 | overlap 3105006 TGAATCTACAAAAAA TTGCCA CTA TGGCAG AGCAGCACCACGGTG YPN_2757 3103849 - 3105801 + | hypothetical protein TERM 3418 3106262 - 3106250 - g 74 -7.7 -4.14193 | AGAAGATGATATAAA CCTCT ATG AGAGG CAACTAAAAACCAGT TERM 3419 3106489 - 3106501 + G 76 -2.7 -5.14563 | opp_overlap 3106486 AGATCGAAAATAGCA TCAGT CAG ATTGA TTTTTTCATCACCAG YPN_2758 3105969 - 3106541 + | two-component sensor protein like yojN YPN_2759 3106544 - 3107197 + | transcriptional regulator RcsB TERM 3420 3107221 - 3107247 + T 100 -15.2 -3.83844 | CCGCTCGACTCTCAA GCCCAGTTTTGC TCT GCAATACTGGGC TTATTAATTAATGAA YPN_2760 3110138 - 3107265 - | hybrid sensory kinase in two-component regulatory system with RcsB and YojN TERM 3421 3109423 - 3109411 - G 76 -3.3 -5.09762 | overlap 3109413 CGGGAAGAAATAAAA TCCTC TAA GCGGA CACTCTGCTCAAAGC TERM 3422 3109838 - 3109863 + g 81 -6.1 -4.96848 | opp_overlap 3109835 3109832, overlap 3109840 TATTCATAACCATGC CACTAGTGGCA TCAG TGTCACTGGCG TTTTTATCTAGCCGA TERM 3423 3109967 - 3109979 + g 100 -3.3 -5.95166 | TGTTGTTATATTCCT GACGA ATA TCGGC TTTTTTTTCGTTAAG TERM 3424 3110190 - 3110239 + r 81 -5.2 -5.14563 | opp_overlap 3110192, overlap 3110192 CGATAACCGATAAAA AAGCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGCTG TTTTTTAATGACACG TERM 3425 3110192 - 3110237 + r 76 -7.8 -4.20707 | opp_overlap 3110192, overlap 3110190 ATAACCGATAAAAAA GCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGC TGTTTTTTAATGACA TERM 3426 3110237 - 3110192 - R 100 -7.8 -5.3236 | opp_overlap 3110192 3110190 ATAACCGATAAAAAA GCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGC TGTTTTTTAATGACA TERM 3427 3110312 - 3110289 - R 77 -11 -2.81547 | overlap 3110286 GCCGCAGATGAATGA GCAGGTGCAA TAAA CCGCACCTGC CAGAGCAACATTATT YPN_2761 3113001 - 3110326 - | DNA gyrase subunit A TERM 3428 3112324 - 3112344 + g 77 -11.9 -3.03771 | opp_overlap 3112322 3112319 CTCTTCAATACCACG GCGGCCATT AAT AATGGCTGC TGTTGGGAAGTCTGG TERM 3429 3112375 - 3112396 + g 73 -5.9 -4.48263 | overlap 3112393 GCCAGGGATATACTC CATCAGC CCTTCAAT GCTGATG TTTTCATCTTCTATA YPN_2762 3113263 - 3113991 + | 3-demethylubiquinone-9 3-methyltransferase TERM 3430 3114013 - 3114034 + F 81 -10.9 -3.27786 | gap 1, opp_overlap 3114005 3114009 3114006, overlap 3114005 CGTAGAACCCACTGG GAGCAGG-GC TAA GCACCTGCTC TTCCTGGCTTTTCCC TERM 3431 3115376 - 3115393 + G 70 -8.4 -3.7941 | TCACAGGGCGGTGTT CGTGGC GGCGCG GCCACG TTGTTCTACCCAATG TERM 3432 3116181 - 3116200 + G 71 -10.8 -3.03007 | overlap 3116161 AACAAGGCGCTTGCC CGTGGTTT AACG AAACCACG TATTCACAAGGTATT YPN_2763 3114485 - 3116773 + | ribonucleotide-diphosphate reductase subunit alpha nrdB 3116936 - 3118066 + | ribonucleotide-diphosphate reductase subunit beta YPN_2765 3118070 - 3118327 + | 2Fe-2S ferredoxin YfaE YPN_2766 3118362 - 3118871 + | ecotin precursor TERM 3433 3118903 - 3118882 - T 95 -13 -3.20207 | opp_overlap 3118877 AATAGCACTCATTAA CCAGGCGC TATTCC GCGCCTGG GCTAAATATTAACAT YPN_2767 3120122 - 3118929 - | competence damage-inducible protein A YPN_2768 3120741 - 3121949 + | tyrosine-specific transport protein TERM 3434 3121994 - 3121967 - T 100 -15 -4.0342 | gap 1, opp_overlap 3121967 CGTAAGCAATAATAA GGGCGCATATCCT GAT AGGA-ATGCGCCC TTTTCCGTCAGCCCA TERM 3435 3121967 - 3121994 + T 100 -15 -4.18018 | gap 1, opp_overlap 3121967 CGTAAGCAATAATAA GGGCGCATATCCT GAT AGGA-ATGCGCCC TTTTCCGTCAGCCCA YPN_2769 3122748 - 3122206 - | hypothetical protein TERM 3436 3123383 - 3123368 - g 91 -5.4 -5.42862 | opp_overlap 3123368 AGATCGGTAAAAAAA CAGACA TGTT TGTCCG CTTCTCCACTGTGGC TERM 3437 3124423 - 3124443 + G 70 -9.7 -3.31501 | overlap 3124424 GAGCATCAACGCATG TTCACCCGT ATT GCGGGTGAG TTATCGCAAGTTCCT TERM 3438 3124424 - 3124442 + G 70 -11 -2.58579 | overlap 3124423 AGCATCAACGCATGT TCACCCGT ATT GCGGGTGA GTTATCGCAAGTTCC YPN_2770 3123109 - 3124548 + | catalase TERM 3439 3124570 - 3124612 + T 84 -6.5 -4.93318 | gap 1, overlap 3124572 TCAGCCCCTTTGAAC TGCACC-CCAAATGTTGG ATAACCCC CTGACATTTGGAGGTGTA TTTTTATGGCTTATC TERM 3440 3124572 - 3124610 + T 71 -6.9 -4.07789 | gap 1, overlap 3124570 AGCCCCTTTGAACTG CACC-CCAAATGTTGG ATAACCCC CTGACATTTGGAGGTG TATTTTTATGGCTTA dinG 3126796 - 3124616 - | ATP-dependent DNA helicase DinG TERM 3441 3125553 - 3125563 + g 73 -5.4 -4.65895 | CATTTAGAAATCGGC GCAT TCG ATGC TTTTTCCATCGCCGC TERM 3442 3125905 - 3125915 + g 70 -2.4 -5.02476 | GTTCAGGATGGGCAA GCCC AGG GGGG TTTTTTGGCCGGTAT TERM 3443 3127932 - 3127919 - g 73 -5.3 -4.63218 | opp_overlap 3127919 3127928, overlap 3127928 GTTTTGCTAATAAAA CTCAA AACA TTGAG TTAGTGGCTCAATAT YPN_2772 3127066 - 3128181 + | outer membrane protein C2 TERM 3444 3128245 - 3128262 + F 100 -12.7 -5.0133 | GAATGTATTTATTAT GCCGGGA TTAT TCCCGGC TTTTTTACGCCACTC YPN_2773 3128593 - 3129483 + | hypothetical protein YPN_2774 3129593 - 3129811 + | hypothetical protein YPN_2775 3132235 - 3129929 - | amino acid decarboxylase TERM 3445 3130065 - 3130042 - G 71 -11.1 -2.81207 | overlap 3130041 TACTTAAGATATAAC GTAGCCATG GTTCTT CATGGCTAC CAAAACTCTCCCCCG YPN_2776 3133639 - 3132305 - | arginine:agmatin antiporter TERM 3446 3132608 - 3132592 - G 71 -10.9 -3.13376 | overlap 3132590 3132589 3132585 3132600 AAACGGAAGAAACCA GGCCAAA CTC TTTGGCC GCATTCGGCGAAATA YPN_2777 3134941 - 3134105 - | ABC transport integral membrane subunit YPN_2778 3135876 - 3134938 - | ABC transport ATP-binding subunit YPN_2779 3137027 - 3135873 - | ABC transport integral membrane subunit TERM 3447 3137281 - 3137291 + r 71 -4 -4.7497 | overlap 3137264 GGCTGGCTCCCCCAG CTAA TGG TTAG TTTTTAATAAATCCG YPN_2780 3137608 - 3137288 - | ABC type periplasmic choline/glycine/betaine binding protein YPN_2781 3138220 - 3137753 - | hypothetical protein TERM 3448 3138023 - 3138034 + g 71 -5.8 -4.31737 | TACGACTTTGGTTGC TCCC AGTT GGGA TTTATTGGTGGTTTT YPN_2782 3138956 - 3139810 + | sulfurtransferase TERM 3449 3139836 - 3139818 - T 72 -8.1 -3.83026 | TGGCGTGATACCAAA GGCTGGC TCACC ACCAGCC ACTGACATGACTCAT YPN_2783 3141429 - 3140014 - | pyridoxal-dependent decarboxylase YPN_2784 3142310 - 3141453 - | hypothetical protein YPN_2785 3143123 - 3142425 - | ABC transport ATP-binding subunit TERM 3450 3142562 - 3142548 - G 100 -10 -4.67635 | GGCAAAATCATAAAA CTGCTC CAC GAGCAG GATAGCCATATCCCC YPN_2786 3144053 - 3143217 - | ABC transport ATP-binding subunit YPN_2787 3145126 - 3144050 - | branched chain amino acid ABC transporter permease TERM 3451 3144154 - 3144137 - G 83 -3.3 -5.46657 | overlap 3144138 CAGGCCAAGAAAAAA TTGCCAG TATT CCGGCAT CGCCATGGTGAACCA YPN_2788 3146727 - 3145126 - | branched chain amino acid ABC transporter permease TERM 3452 3146791 - 3146760 - R 100 -10.9 -4.57837 | overlap 3146762 ATATGTGGTGAAAAA GAGCTGACGTCAG ATCCCG CTGACATCAGCAC GTCACAGCGATTACC TERM 3453 3146789 - 3146762 - R 100 -12.1 -3.90316 | overlap 3146760 ATGTGGTGAAAAAGA GCTGACGTCAG ATCCCG CTGACATCAGC ACGTCACAGCGATTA YPN_2789 3148119 - 3146851 - | substrate-binding periplasmic transport protein TERM 3454 3148423 - 3148399 - R 72 -6.4 -4.31085 | TATATTAATCTAAAA CAGGCATGGC GGATT ACCACACCTG TTTTTTTACTAACAG YPN_2790 3149034 - 3148561 - | hypothetical protein TERM 3455 3148746 - 3148758 + g 73 -3.3 -5.00884 | overlap 3148747 TGTCTTTCAATTCGA ATGCG ACA CGCAG TTTTTTCAACACAAT TERM 3456 3149112 - 3149097 - R 74 -4 -4.94243 | gap 1, overlap 3149092 3149100 GCAAAAAAACTAAAA GAGCGTC TTT GACG-TC TAGCGGGCAGTATTG YPN_2791 3150161 - 3149280 - | ABC transport membrane permease TERM 3457 3150086 - 3150108 + g 74 -4 -5.00196 | ATCTGATATAACGTT TCTGCTGCCT GAA AAGCTGCGGA TTTTGTTGTTTCAGC YPN_2792 3151024 - 3150164 - | ABC transport membrane permease TERM 3458 3151104 - 3151078 - R 75 -5.9 -4.70659 | gap 1, opp_overlap 3151081, overlap 3151081 3151083 TGTTACACCTAAAAA CAATAGCTCCGG CGAA CCAGAGCCA-TG TTGTTTTATCCGTTG TERM 3459 3151102 - 3151081 - R 93 -8.7 -4.46215 | opp_overlap 3151081, overlap 3151078 3151083 TACACCTAAAAACAA TAGCTCCGG CGAA CCAGAGCCA TGTTGTTTTATCCGT TERM 3460 3151100 - 3151083 - R 78 -9.1 -3.82353 | opp_overlap 3151081, overlap 3151081 3151078 CACCTAAAAACAATA GCTCCGG CGAA CCAGAGC CATGTTGTTTTATCC YPN_2793 3152056 - 3151127 - | substrate-binding periplasmic transport protein YPN_2794 3152965 - 3152093 - | ABC transport ATP-binding subunit TERM 3461 3152296 - 3152306 + g 73 -5.4 -4.62069 | opp_overlap 3152296, overlap 3152285 3152280 3152298 GTAACGTATTCATAA TACG TGT CGTA TTTTTAGGGTCCAAC TERM 3462 3153001 - 3153040 + r 80 -8.7 -3.96298 | opp_overlap 3153012, overlap 3153006 3153012 TATTGATGATAGTTG CATGTGAAAAAGGTGAC AAAATA GCCACCTTTTTCGTGTG TTTAATTAATGACTG TERM 3463 3153029 - 3153012 - R 71 -4.8 -4.62069 | opp_overlap 3153006 3153001 3153012 GTTGCATGTGAAAAA GGTGAC AAAATA GCCACC TTTTTCGTGTGTTTA YPN_2795 3153385 - 3153137 - | hypothetical protein YPN_2796 3154673 - 3153570 - | hypothetical protein TERM 3464 3154605 - 3154592 - G 74 -2.3 -5.0707 | opp_overlap 3154593 3154599, overlap 3154593 AAATATAAAAATAAA CGACC CTCA GGTCT TGTTGCACGACTGCA YPN_2797 3154985 - 3154815 - | hypothetical protein TERM 3465 3154890 - 3154876 - G 80 -2.7 -5.34365 | opp_overlap 3154878 3154878 CGATAAGAAGAAAAA CGCGC TAATG GCGTG TTGGCGTTTGAGTAT YPN_2798 3154986 - 3155327 + | hypothetical protein YPN_2799 3155892 - 3155353 - | adenylate cyclase 2 TERM 3466 3155430 - 3155440 + g 71 -6.8 -4.13995 | opp_overlap 3155429 TATTGGCAAAATCAC GGCA TTC TGCC TTTAATTTATCAAGC TERM 3467 3157013 - 3157041 + G 70 -3.2 -4.87626 | gap 1 CTTTAAACATTTACC TATCGCGGGTGAA TATC TGCACC-GTGATA TTTTTGATATTGCGG YPN_2800 3156102 - 3157814 + | D-lactate dehydrogenase TERM 3468 3157911 - 3157882 - T 100 -13 -3.7791 | opp_overlap 3157882 CAATTAGTCACTAAA GCGGAATTTGCC TCTGCT AGCAAATTCCGC TTCTCAGTCGCGATG TERM 3469 3157882 - 3157911 + T 95 -12.3 -3.35996 | opp_overlap 3157882 CAATTAGTCACTAAA GCGGAATTTGC CTCTGCTA GCAAATTCCGC TTCTCAGTCGCGATG pbpG 3158870 - 3157935 - | D-alanyl-D-alanine endopeptidase YPN_2802 3159209 - 3159388 + | hypothetical protein YPN_2803 3160406 - 3159462 - | tRNA-dihydrouridine synthase C TERM 3470 3160684 - 3160636 - R 88 -9.8 -4.07687 | gap 1, opp_overlap 3160642, overlap 3160638 AGTCGTGTGGTAAAA TA-CCCATGGGCAATGCCCATTT ATGA AAATGGACATTGCCAAAGAGATA GTCTAAATACGTATT TERM 3471 3160681 - 3160638 - R 100 -14 -3.63744 | opp_overlap 3160642, overlap 3160636 TCGTGTGGTAAAATA CCCATGGGCAATGCCCATTT ATGA AAATGGACATTGCCAAAGAG ATAGTCTAAATACGT TERM 3472 3160642 - 3160654 + r 78 -9.1 -3.87815 | opp_overlap 3160638 3160636 GTGGTAAAATACCCA TGGGC AAT GCCCA TTTATGAAAATGGAC YPN_2804 3161629 - 3160700 - | hypothetical protein TERM 3473 3160949 - 3160927 - G 70 -8.6 -3.72374 | opp_overlap 3160927 3160928 3160943, overlap 3160925 3160928 3160942 3160943 GTTCATTAACAAATA CTTTACCATT AGT AATGGTAAAA TTTACCTCTCCTGAA TERM 3474 3161354 - 3161380 + g 80 -9.5 -4.11404 | opp_overlap 3161358, overlap 3161356 CGAATTCACCGCGTT AACATCACCAC TTACT GTGGTGATGTC TTTATCTACTATAGA TERM 3475 3161356 - 3161378 + g 82 -12.1 -3.65001 | opp_overlap 3161358, overlap 3161354 AATTCACCGCGTTAA CATCACCAC TTACT GTGGTGATG TCTTTATCTACTATA TERM 3476 3161966 - 3161942 - R 100 -9.9 -4.55697 | opp_overlap 3161945, overlap 3161944 3161945 ATTTTGATAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3477 3161964 - 3161944 - R 100 -12.5 -3.88703 | opp_overlap 3161945, overlap 3161942 3161945 TTTGATAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3478 3161945 - 3161963 + r 100 -16 -4.8048 | opp_overlap 3161945 3161944 3161942 TTGATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3479 3161963 - 3161945 - R 100 -16 -2.92499 | opp_overlap 3161945, overlap 3161944 3161942 TTGATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2805 3162502 - 3162044 - | transposase for the IS1541 insertion element TERM 3480 3162633 - 3162615 - R 100 -16 -3.07307 | opp_overlap 3162615 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3481 3162615 - 3162633 + r 100 -16 -4.36914 | opp_overlap 3162615 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3482 3162670 - 3162653 - R 100 -9.1 -5.60993 | opp_overlap 3162653 CTGGGCACAAAAAAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA TERM 3483 3162653 - 3162670 + r 76 -6.9 -4.431 | opp_overlap 3162653 CTGGGCACAAAAAAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA YPN_2806 3163717 - 3162713 - | helicase YPN_2807 3164309 - 3163632 - | transposase TERM 3484 3164340 - 3164319 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPN_2808 3165522 - 3164314 - | transposase for the IS285 insertion element TERM 3485 3165644 - 3165616 - R 100 -9.6 -4.86731 | opp_overlap 3165641 CCCTTCCAAAGAAAA CACCCTGTCAGC TTACC GCTCACAAGGTG GGAGTGACCATCTCA YPN_2809 3166011 - 3165697 - | hypothetical protein YPN_2810 3166683 - 3166129 - | molecular chaperone YPN_2811 3167026 - 3166832 - | hypothetical protein YPN_2812 3167788 - 3167555 - | transposase YPN_2813 3168110 - 3167844 - | hypothetical protein TERM 3486 3168160 - 3168132 - R 100 -13.2 -4.86731 | opp_overlap 3168144 CCCTCCCAAAGAAAA CACCCTGTCAGC TTACC GCTCACAGGGTG GGGGTGATCATCTTA TERM 3487 3168180 - 3168197 + r 76 -6.9 -4.431 | opp_overlap 3168180 TGATCATCTTATTAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA YPN_2814 3169595 - 3168240 - | ATP-dependent RNA helicase RhlE YPN_2815 3169986 - 3170696 + | putative DNA-binding transcriptional regulator TERM 3488 3171629 - 3171616 - g 70 -4.5 -4.63184 | AATTCACGCCAAAAA CAGTG GAAA CACCG GATTTACGCACCGAC YPN_2816 3170748 - 3171734 + | hypothetical protein YPN_2817 3171748 - 3173490 + | ATPase TERM 3489 3174417 - 3174436 + G 73 -5 -4.66609 | gap 1, opp_overlap 3174409, overlap 3174410 3174418 3174420 AATTTAACGCCGCGA TGATCGCGT TGA ACGCGG-CA TTTTTGCCTGCGGTA YPN_2818 3173495 - 3174670 + | ABC transporter multidrug efflux pump, permease subunit YPN_2819 3174683 - 3175789 + | ABC transporter multidrug efflux pump, permease subunit YPN_2820 3176154 - 3175828 - | ethyl tert-butyl ether degradation EthD YPN_2821 3176392 - 3176165 - | coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase TERM 3490 3176473 - 3176483 + H 90 -4 -5.64274 | opp_overlap 3176473, overlap 3176461 TGTTATTGAGGAAAT CAAT ATG ATTG TTTTTTTATCCATGA YPN_2822 3176947 - 3177858 + | LysR family transcriptional regulator YPN_2823 3178968 - 3177859 - | NADH:flavin oxidoreductase YPN_2824 3180707 - 3179316 - | helix-turn-helix, Fis-type TERM 3491 3179435 - 3179413 - GR 70 -10 -2.52464 | GTCTTTTCCAACGCA GTCAAAATAG CGT CTATTTCGAC CCATTCGAGAGACTG TERM 3492 3180576 - 3180602 + gr 70 -7.2 -3.90588 | opp_overlap 3180595 3180596, overlap 3180596 CTCTAATCCATTGTG GGCTGGCGTGGT TTG ATAACCCCAGCC TTTCATTAAAGCCTG YPN_2825 3182481 - 3180667 - | PAS TERM 3493 3181869 - 3181849 - GH 78 -4 -5.12474 | opp_overlap 3181849 3181861 GAGAATAGACAAAAA GATAATCG TATTG CGAATATC TTTTGCTTGCATCGC TERM 3494 3182530 - 3182577 + H 100 -17.4 -4.76041 | opp_overlap 3182540 TCAATGAATTGGTGG CGGGTAATTATTACCCAC ATCGCCGCTACC GTGGGTAATAATTACCCG TTTTTACTGAATGTC zraP 3182839 - 3183312 + | zinc resistance protein TERM 3495 3183353 - 3183321 - T 73 -5.6 -4.51238 | opp_overlap 3183323, overlap 3183322 3183323 CCGATAAAATAGAAA CTCCCCTGATTAAC ATTTG ATTAATCAGGGGTT ATCTGGAGAGTCTAT TERM 3496 3183352 - 3183322 - T 71 -9.1 -3.29658 | opp_overlap 3183323, overlap 3183321 3183323 CGATAAAATAGAAAC TCCCCTGATTAAC ATTTG ATTAATCAGGGGT TATCTGGAGAGTCTA TERM 3497 3183323 - 3183351 + T 91 -11.9 -3.49102 | opp_overlap 3183323 3183322 3183321 GATAAAATAGAAACT CCCCTGATTAA CATTTGA TTAATCAGGGG TTATCTGGAGAGTCT TERM 3498 3183351 - 3183323 - T 86 -12.6 -2.5671 | opp_overlap 3183323, overlap 3183322 3183321 GATAAAATAGAAACT CCCCTGATTAAC ATTTG ATTAATCAGGGG TTATCTGGAGAGTCT YPN_2827 3184005 - 3183400 - | major facilitator superfamily xanthosine permease TERM 3499 3184040 - 3184016 - R 100 -9.9 -4.4572 | opp_overlap 3184019, overlap 3184018 3184019 AACATGGCAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3500 3184038 - 3184018 - R 100 -12.5 -3.82628 | opp_overlap 3184019, overlap 3184016 3184019 CATGGCAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3501 3184019 - 3184037 + r 100 -16 -4.8048 | opp_overlap 3184018 3184016 3184019 ATGGCAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3502 3184037 - 3184019 - R 100 -16 -2.88854 | opp_overlap 3184019, overlap 3184018 3184016 ATGGCAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2828 3184576 - 3184118 - | transposase for the IS1541 insertion element YPN_2829 3185366 - 3184566 - | hypothetical protein TERM 3503 3184707 - 3184689 - G 93 -16 -3.07307 | opp_overlap 3184689 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3504 3184689 - 3184707 + g 100 -16 -4.36914 | opp_overlap 3184689 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3505 3184728 - 3184743 + g 76 -4.8 -4.9138 | opp_overlap 3184728 TGGGCACAACAAGAA GAAAAT AGCC ATTTTC TTTTGTTTAAATAAT YPN_2830 3186368 - 3185505 - | purine nucleoside phosphorylase YPN_2831 3186681 - 3187562 + | membrane protein YPN_2832 3188493 - 3187600 - | DNA-binding transcriptional activator XapR YPN_2833 3190773 - 3188725 - | choline transport protein BetT TERM 3506 3190705 - 3190687 - G 77 -9.5 -3.7319 | AGTCATAAGACAGAA CGCGAGG ATCAA CCCCGCG GACGTAAAGAACACC TERM 3507 3191092 - 3191077 - H 75 -10.4 -2.73542 | CGTAACGGGTAACTA GCTGCC AATA GGCAGC ATGAATAACAGTATT TERM 3508 3191315 - 3191299 - g 74 -4.4 -4.82901 | opp_overlap 3191313, overlap 3191313 TTTCCGTGACAAAAA TGGCCT GCTAG AAGCCA CAATGAGGTATCTGA YPN_2834 3191138 - 3191734 + | transcriptional regulator BetI TERM 3509 3191947 - 3191935 - g 73 -10.5 -3.3197 | ACAGGATGTTGATAA GGCGG TAG CCGCC GCCAAACAAGGTCAG YPN_2835 3191792 - 3193264 + | betaine aldehyde dehydrogenase YPN_2836 3193287 - 3194990 + | choline dehydrogenase TERM 3510 3195145 - 3195113 - T 100 -11.3 -5.63517 | opp_overlap 3195120, overlap 3195119 3195120 TGGTGAAAGAAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3511 3195139 - 3195119 - T 100 -12.5 -4.1934 | opp_overlap 3195120, overlap 3195113 3195120 AAGAAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3512 3195120 - 3195138 + T 100 -16 -4.8048 | opp_overlap 3195119 3195113 3195120 AGAAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3513 3195138 - 3195120 - T 100 -16 -3.07944 | opp_overlap 3195120, overlap 3195119 3195113 AGAAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2837 3195677 - 3195219 - | transposase for the IS1541 insertion element TERM 3514 3195808 - 3195790 - R 100 -16 -3.07307 | opp_overlap 3195790 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3515 3195790 - 3195808 + r 100 -16 -4.36914 | opp_overlap 3195790 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3516 3195829 - 3195849 + r 100 -11.9 -3.88498 | opp_overlap 3195829 TGGGCACAACAAAAA GGACACCAG ATT TTGGTGTCC TTTACTATCTCAAAC TERM 3517 3195849 - 3195829 - R 100 -11.2 -5.18726 | opp_overlap 3195829 TGGGCACAACAAAAA GGACACCA GATTT TGGTGTCC TTTACTATCTCAAAC YPN_2838 3196622 - 3195912 - | membrane protein TERM 3518 3196422 - 3196409 - G 85 -3.8 -5.38549 | overlap 3196412 CGGAAATAACAAAAA CCAG ACCAAG CTGG GCAATAATCAAGCCA MoaE 3197217 - 3196765 - | molybdopterin synthase large subunit moaD 3197465 - 3197220 - | molybdopterin synthase small subunit moaC 3197941 - 3197462 - | molybdenum cofactor biosynthesis protein C moaA 3199067 - 3198042 - | molybdenum cofactor biosynthesis protein A YPN_2843 3199554 - 3200477 + | hypothetical protein YPN_2844 3200853 - 3200608 - | hypothetical protein YPN_2845 3203160 - 3201145 - | excinuclease ABC subunit B TERM 3519 3203052 - 3203071 + g 71 -7.8 -4.08216 | overlap 3203035 3203033 3203053 CTGTTACGCCTAGCA GGGTCTGG TGTG CCAGACCA TTTTCCAGCCCCTCC TERM 3520 3203053 - 3203070 + g 74 -11.3 -3.04715 | overlap 3203035 3203033 3203052 TGTTACGCCTAGCAG GGTCTGG TGTG CCAGACC ATTTTCCAGCCCCTC TERM 3521 3204479 - 3204456 - g 74 -8.2 -4.09739 | TGAACCCCCGCAAAA CTTGCAACAG CAGC CTGTTGAAAG ACGCAATGCGTTAGG TERM 3522 3204587 - 3204607 + G 90 -9 -4.6856 | gap 1, opp_overlap 3204586 3204587 CAGGCCGCCACAAAT CCCA-CCCG ATTC CGGGCTGGG TTTTTGAGCTATTTC YPN_2846 3204250 - 3204960 + | amino acid transporter bioD 3205815 - 3205093 - | dithiobiotin synthetase TERM 3523 3205602 - 3205589 - G 79 -5.3 -5.00616 | opp_overlap 3205589 GTCGCTTCCAAAAAA GTGAA CGGA TTCAC TTGTGAGTAACCGAG YPN_2848 3206611 - 3205808 - | biotin synthesis protein BioC TERM 3524 3206084 - 3206073 - G 76 -3 -5.09426 | opp_overlap 3206051 TGCAATGGCAAAAAA TCAT TTAC ATGA CGCTGACCATCCACC YPN_2849 3207746 - 3206595 - | 8-amino-7-oxononanoate synthase YPN_2850 3208783 - 3207746 - | biotin synthase TERM 3525 3210016 - 3210026 + G 74 -6.8 -4.36914 | GTTAATGTCGCCCGC CTGC AAC GCAG TTTTGTCGAACAGGG YPN_2851 3208882 - 3210162 + | adenosylmethionine--8-amino-7-oxononanoate transaminase YPN_2852 3211351 - 3210347 - | 6-phosphogluconolactonase YPN_2853 3211642 - 3212463 + | phosphotransferase modC 3213598 - 3212519 - | molybdate transporter ATP-binding protein TERM 3526 3213594 - 3213612 + g 93 -8.8 -5.01732 | overlap 3213595 CTGAAATTCAGTTCT AGCATGGG GCC CCCATGCG TTTTTTACCCCAATT TERM 3527 3213595 - 3213611 + g 82 -12.3 -3.60316 | overlap 3213594 TGAAATTCAGTTCTA GCATGGG GCC CCCATGC GTTTTTTACCCCAAT modB 3214287 - 3213592 - | molybdate ABC transporter permease protein TERM 3528 3214131 - 3214104 - G 73 -10.6 -3.19657 | overlap 3214099 3214097 3214107 ACAAGAGATAGCCAA TCACCACCGGTG GCAG CACCAGTGGCAA ATGAATCACACTGTC TERM 3529 3214128 - 3214107 - G 74 -12.3 -2.78422 | overlap 3214104 3214099 3214097 AGAGATAGCCAATCA CCACCGGTG GCAG CACCAGTGG CAAATGAATCACACT modA 3215066 - 3214287 - | molybdate transporter periplasmic protein TERM 3530 3214856 - 3214827 - G 71 -5 -4.44046 | gap 1 GTCAGCGGAAATAAA CAGATCG-GCCGG TGCCC CCTGCTCAATCTG CCGTGCCAGCGTGGA TERM 3531 3215250 - 3215227 - R 89 -7.4 -5.04175 | GGAATGATACAAAAA TGCCCAACGT TTAT ACGCCAGGCA TTCAGAAATCAGAGA YPN_2857 3215453 - 3215301 - | hypothetical protein TERM 3532 3215548 - 3215509 - H 78 -9.6 -3.59279 | gap 1, opp_overlap 3215511 3215524, overlap 3215506 TATCACAATAACCAA CACTGCTGCCTATCATTTA CTG TAAATGATAT-CAGCAATG AATTAACCCTGTTAT YPN_2858 3215736 - 3216527 + | DNA-binding transcriptional regulator ModE TERM 3533 3216976 - 3217002 + G 70 -8.7 -3.59979 | overlap 3216978 GCGGCCCGTGACCCG CAGCGCTGTCA ACAAC TGGCAGCGCTA TTTGGAATCAGCCAC TERM 3534 3216978 - 3217000 + G 77 -11.3 -3.38046 | overlap 3216976 GGCCCGTGACCCGCA GCGCTGTCA ACAAC TGGCAGCGC TATTTGGAATCAGCC TERM 3535 3217706 - 3217721 + G 78 -4 -5.16572 | gap 1, overlap 3217677 3217700 GCACCCGTGTACGTA CCGTGAT TTT ATC-CGG TTTTTTCGATTCGAT YPN_2859 3216637 - 3218127 + | putative molybdenum transport ATP-binding protein ModF TERM 3536 3218287 - 3218277 - f 78 -2.4 -5.44119 | TTTAGCTCAAAAAAA TGCC TTA GGCT AAACCGTCATTTAGG TERM 3537 3218753 - 3218737 - g 78 -3.6 -5.09426 | TTCAAGGTGAAAAAA CACCCA TCAGT CGGGCG CATGGGTTGGGTTGT YPN_2860 3218344 - 3219162 + | membrane protein TERM 3538 3219712 - 3219723 + G 70 -4.4 -4.60487 | TCCGTGATCGCACAC TGCT CGAT AGCA TTTTTGCGGCTCATC TERM 3539 3220375 - 3220356 - g 73 -9.2 -3.76224 | opp_overlap 3220361 GCCGCATTCAGTAAA GCCTGTGG TAAA CCACTGGC CTACCATTTTGCCCC YPN_2861 3219522 - 3220538 + | UDP-galactose-4-epimerase YPN_2862 3220548 - 3221600 + | galactose-1-phosphate uridylyltransferase YPN_2863 3221597 - 3222748 + | galactokinase TERM 3540 3222845 - 3222833 - g 70 -3.3 -4.78839 | overlap 3222834 AATTGCAGAATAAAA GCGGT ATG ACCGT CACCTTTATGAATGG YPN_2864 3222742 - 3222894 + | hypothetical protein galM 3222915 - 3223811 + | aldose 1-epimerase YPN_2866 3224104 - 3224439 + | starvation-inducible protein YPN_2867 3224786 - 3225538 + | phosphoglycerate mutase 1 TERM 3541 3225566 - 3225589 + T 95 -7.5 -5.4505 | gap 1, opp_overlap 3225566 AACACAGTAAAAAAA CCCCGTACAT GAATA ATGT-CGGGG TTTTTTATTGACGGC TERM 3542 3225589 - 3225566 - T 100 -7.5 -5.62219 | gap 1, opp_overlap 3225566 AACACAGTAAAAAAA CCCCGTACAT GAATA ATGT-CGGGG TTTTTTATTGACGGC YPN_2868 3226772 - 3225720 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3543 3226164 - 3226150 - G 71 -5.7 -4.33417 | opp_overlap 3226155 GTCACCGACAAGAAA CAGTG TGGGG CACTG GCCGCGTTGATCGCA TERM 3544 3226196 - 3226212 + g 86 -8.7 -4.56597 | CAATAGCCACTTTAA TGGTGCC GTC GGTACCA TTTTTAAAACCAACG TERM 3545 3226362 - 3226344 - G 73 -5.2 -4.72333 | opp_overlap 3226345 3226349, overlap 3226345 AATCATATCCAAAAA CTCACCGG CGG CCGGTAAC CCGCTGTCGTTAATT TERM 3546 3226349 - 3226371 + g 70 -9 -3.51411 | opp_overlap 3226345 3226344, overlap 3226345 TATCCAAAAACTCAC CGGCGGCCGG TAA CCCGCTGTCG TTAATTTCGACGAGT YPN_2869 3227221 - 3228159 + | zinc transporter ZitB YPN_2870 3228999 - 3228274 - | intergral membrane NMN transport protein PnuC YPN_2871 3230182 - 3229121 - | quinolinate synthetase TERM 3547 3229403 - 3229387 - G 76 -4.4 -5.02074 | gap 1 GCATCTTGTAAAAAA TGCC-CC GATC GGTGGCA ACAATTAACGTTTTC TERM 3548 3230294 - 3230284 - R 70 -5.4 -4.54026 | opp_overlap 3230290, overlap 3230288 3230290 TCCTAAACAAAATAA CCAA TAT TTGG CAAAAAGTCGCCAAA TERM 3549 3230529 - 3230544 + r 73 -9 -3.5399 | overlap 3230524 ACTCGCCCTTCGGGT CAACGC TGGC GCGTTG TTGTCTCGCTCTGCT TERM 3550 3231008 - 3230974 - R 100 -14.4 -4.0162 | TCTTCACACGATAAA GCCCAGAAATCAGTCA AAT TGACTAAATCCTGGGC TCAAAAAAGCTAAAG YPN_2872 3231827 - 3231018 - | hypothetical protein YPN_2873 3232343 - 3231837 - | peptidoglycan-associated outer membrane lipoprotein tolB 3233686 - 3232394 - | translocation protein TolB tolA 3234987 - 3233806 - | cell envelope integrity inner membrane protein TolA TERM 3551 3234124 - 3234148 + g 73 -5.1 -4.70879 | gap 1 GGCAGCAGCGGCACC TGCACCCGAA CCACTC TTCGG-TGCA TTTTTAGCGTTTGCC TERM 3552 3234194 - 3234216 + g 100 -9 -5.46657 | opp_overlap 3234182 3234180, overlap 3234196 3234208 TCATCAACATCCGTT GAGGCAGCCG CTT CTGCTGCCGC TTTTTTCTTGGCCTC TERM 3553 3234196 - 3234214 + g 70 -10.2 -2.91061 | opp_overlap 3234180, overlap 3234194 3234208 ATCAACATCCGTTGA GGCAGCCG CTT CTGCTGCC GCTTTTTTCTTGGCC TERM 3554 3234254 - 3234264 + g 80 -2.4 -5.38047 | GCAGCAACTTTTTTA GCAG CAG CGGC TTTTTTCTCTGCATC TERM 3555 3234371 - 3234390 + g 76 -3.4 -5.15969 | overlap 3234374 GCTTGTTTCTTCGCC GCAGCGGC AACA GCAGCTTC TTTTTTGGCTTCAGC TERM 3556 3234556 - 3234569 + g 76 -3.1 -5.11254 | TTCAGCGGCCTGCTT TTGCT GTTC AGCGA TTTGTTTTTGTTGTT YPN_2876 3235512 - 3235084 - | colicin uptake protein TolR YPN_2877 3236211 - 3235525 - | colicin uptake protein TolQ YPN_2878 3236612 - 3236211 - | acyl-CoA thioester hydrolase YbgC TERM 3557 3236724 - 3236697 - R 76 -7 -4.57218 | opp_overlap 3236695, overlap 3236700 3236701 AGAATAGAACGAAAA TAATTATGGGCC GGAT GGCCCATAGGTA GGATTGTGCTCAAGG TERM 3558 3236721 - 3236700 - R 86 -8.7 -4.36586 | opp_overlap 3236695, overlap 3236697 3236701 ATAGAACGAAAATAA TTATGGGCC GGAT GGCCCATAG GTAGGATTGTGCTCA TERM 3559 3236720 - 3236701 - R 86 -12.2 -3.20325 | opp_overlap 3236695, overlap 3236700 3236697 TAGAACGAAAATAAT TATGGGCC GGAT GGCCCATA GGTAGGATTGTGCTC YPN_2879 3237076 - 3236744 - | hypothetical protein TERM 3560 3236980 - 3236996 + g 75 -10.8 -3.45134 | opp_overlap 3236980 CGAGCACCAGTGAAA GGGCCC TCAAT GGGCCC TTATCCATTAATTCG TERM 3561 3236996 - 3236980 - G 80 -10.8 -3.69323 | opp_overlap 3236980 CGAGCACCAGTGAAA GGGCCC TCAAT GGGCCC TTATCCATTAATTCG YPN_2880 3238307 - 3237168 - | cytochrome D ubiquinol oxidase subunit II TERM 3562 3238163 - 3238182 + g 82 -7.2 -4.60487 | opp_overlap 3238163 CAATCGAGTTAATCA TGATACGG CGCT CTGTATCA TTTTTACCGATGATA YPN_2881 3239890 - 3238322 - | cytochrome D ubiquinol oxidase subunit I TERM 3563 3239846 - 3239830 - G 76 -5.1 -4.87786 | TTAATGGGACAAAAA GGAAATG GTA CATTGCC GTTAAGGCAAACTGT TERM 3564 3240151 - 3240130 - R 70 -8.1 -3.62046 | opp_overlap 3240129 3240130 GCATTTTGGTAACAA TGTCGTAAA TTGA TCTACGACA ATTTAAGCCTATATG TERM 3565 3240354 - 3240370 + r 70 -3.7 -4.7889 | overlap 3240349 TAAATTCAGAGTGAG TCAAATC ACA GTTTTGA TTTTTACATATTTAT TERM 3566 3240609 - 3240592 - R 100 -12.7 -5.252 | opp_overlap 3240590 CATTTGTATAAAAAA GGCCACC AAAA GGTGGCC AGTATGTCGCGTTAG YPN_2882 3241528 - 3240656 - | succinyl-CoA synthetase subunit alpha sucC 3242694 - 3241528 - | succinyl-CoA synthetase subunit beta TERM 3567 3242440 - 3242454 + g 74 -2.1 -5.08824 | overlap 3242441 TCCGTTGGCATCTGT TTGGT AAGTG ACCAG TTTTTTACCTAGCCA TERM 3568 3242722 - 3242735 + r 70 -9.5 -2.81045 | overlap 3242719 ATATAAGGTCTGAGA CGGGC CGAA GCCCG TAGTGTTCTGGATAA YPN_2884 3244030 - 3242807 - | dihydrolipoamide acetyltransferase kgd 3246867 - 3244060 - | alpha-ketoglutarate decarboxylase TERM 3569 3245188 - 3245205 + g 74 -8.3 -4.08919 | AGAGCTGATCCGACG CGCCAGC TCTT GCAGGCG TTTCATTTCAACTTT TERM 3570 3246308 - 3246324 + g 83 -5.1 -5.12971 | opp_overlap 3246306 3246308, overlap 3246312 ACAACCGATTCAATA CGCTG CTGAATC CAGCG TTTTTCTTCGGTGTT TERM 3571 3246808 - 3246781 - G 76 -6.4 -4.68994 | gap 1, opp_overlap 3246781, overlap 3246783 AGGATCAGTTAAAAA GTC-TTCATAGAG CTG CTCTATGTAGGAC TGGTTCGCGCCCGCC TERM 3572 3246960 - 3246974 + r 70 -7.1 -3.75378 | AAACGGTTCACTCGA CGTGC TCAAT GCACG TTCTGTTATGGACCT TERM 3573 3247063 - 3247084 + r 84 -11.6 -3.16683 | opp_overlap 3247063 CCTACCGTGAAGCTA CCCGGAGA ATCCCC TCTCCGGG TTAATAAACTCACAT TERM 3574 3247084 - 3247063 - R 86 -12.3 -2.53263 | opp_overlap 3247063 CCTACCGTGAAGCTA CCCGGAGAA TCCC CTCTCCGGG TTAATAAACTCACAT sdhB 3247939 - 3247223 - | succinate dehydrogenase iron-sulfur subunit sdhA 3249755 - 3247989 - | succinate dehydrogenase flavoprotein subunit TERM 3575 3249034 - 3249003 - G 74 -11.6 -3.18264 | gap 1, opp_overlap 3249030 3249031, overlap 3249005 GCCTTCAGTCACTAA TACACCCGCACCGGC AAT ACCGGT-CGGGTGGA ACTGCCACATTTCCA TERM 3576 3249032 - 3249005 - G 86 -14.2 -3.1552 | gap 1, opp_overlap 3249030 3249031, overlap 3249003 CTTCAGTCACTAATA CACCCGCACCGGC AAT ACCGGT-CGGGTG GAACTGCCACATTTC sdhD 3250103 - 3249756 - | succinate dehydrogenase cytochrome b556 small membrane subunit sdhC 3250486 - 3250097 - | succinate dehydrogenase cytochrome b556 large membrane subunit gltA 3251196 - 3252476 + | type II citrate synthase TERM 3577 3252537 - 3252506 - T 79 -10.9 -3.09823 | opp_overlap 3252511, overlap 3252501 3252511 CCGCGTAAAATTAGA GCAAAGTCCCGGC TAGGAG GCCAGGACTTTGT TAGCAATTTGAGGCA TERM 3578 3252511 - 3252532 + T 76 -7.9 -4.19371 | opp_overlap 3252511 3252506 3252501 TAAAATTAGAGCAAA GTCCCGGCT AGGA GGCCAGGAC TTTGTTAGCAATTTG TERM 3579 3252532 - 3252511 - T 83 -9.4 -3.92694 | opp_overlap 3252511, overlap 3252506 3252501 TAAAATTAGAGCAAA GTCCCGGC TAGGAG GCCAGGAC TTTGTTAGCAATTTG TERM 3580 3252549 - 3252565 + T 85 -9.4 -4.19238 | TTGTTAGCAATTTGA GGCACC GTTGA GGTGCC TTTTAACGTTAGAGC YPN_2891 3253162 - 3252584 - | heat shock protein GrpE ppnK 3253286 - 3254167 + | inorganic polyphosphate/ATP-NAD kinase YPN_2893 3254254 - 3255915 + | recombination and repair protein TERM 3581 3256301 - 3256285 - g 76 -3 -5.14563 | CTGGTCACGAAAAAA TAACGC AACAA ACGTTA ACGTTGACCTTTGAT YPN_2894 3256029 - 3256370 + | hypothetical protein TERM 3582 3256501 - 3256523 + T 78 -4.1 -5.1101 | opp_overlap 3256502, overlap 3256502 3256505 GAGTGACAACAAAAA ATAAGGCGC TGATT GTGCCTTAC TTTTTTGCCTGCTCA TERM 3583 3256522 - 3256502 - T 87 -5.4 -5.56673 | opp_overlap 3256501 3256502 3256505 AGTGACAACAAAAAA TAAGGCGC TGATT GTGCCTTA CTTTTTTGCCTGCTC TERM 3584 3256502 - 3256522 + T 70 -7.6 -3.65883 | opp_overlap 3256502, overlap 3256501 3256505 AGTGACAACAAAAAA TAAGGCGC TGATT GTGCCTTA CTTTTTTGCCTGCTC YPN_2895 3256804 - 3256520 - | hypothetical protein YPN_2896 3257231 - 3256797 - | hypothetical protein smpB 3257380 - 3257874 + | SsrA-binding protein TERM 3585 3258359 - 3258333 - f 93 -12.2 -3.71527 | opp_overlap 3258333, overlap 3258327 GGTGAAGTACGGAAA GCCCGCATCCCT TCT AGGTTTGCGGGC TTTTTTGTGCCCAGA TERM 3586 3258333 - 3258359 + F 100 -12.2 -5.24129 | opp_overlap 3258327 3258333 GGTGAAGTACGGAAA GCCCGCATCCCT TCT AGGTTTGCGGGC TTTTTTGTGCCCAGA TERM 3587 3258396 - 3258378 - f 100 -16 -4.36914 | opp_overlap 3258378 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3588 3258378 - 3258396 + F 100 -16 -3.07307 | opp_overlap 3258378 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_2898 3258509 - 3258967 + | transposase for the IS1541 insertion element TERM 3589 3259035 - 3259079 + F 95 -12.9 -2.96216 | opp_overlap 3259048, overlap 3259041 3259045 3259047 3259048 ACAGAGCCTTATAGG CGCATATGAAAAACCTCCGGC TAT GCCGGAGGATATTTATTTGTG TCTGTAGTAGTCCAA TERM 3590 3259041 - 3259073 + F 100 -11.3 -4.18367 | opp_overlap 3259048, overlap 3259035 3259045 3259047 3259048 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTGTGTCTGTAGTA TERM 3591 3259045 - 3259069 + F 100 -9.9 -4.66625 | opp_overlap 3259048, overlap 3259041 3259035 3259047 3259048 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGTGTCTGT TERM 3592 3259047 - 3259067 + F 100 -12.5 -3.92887 | opp_overlap 3259048, overlap 3259045 3259041 3259035 3259048 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGTGTCT TERM 3593 3259048 - 3259066 + F 100 -16 -2.94105 | opp_overlap 3259048, overlap 3259047 3259045 3259041 3259035 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGTC TERM 3594 3259066 - 3259048 - f 100 -16 -4.8048 | opp_overlap 3259048 3259047 3259045 3259041 3259035 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTGTC TERM 3595 3259265 - 3259279 + G 73 -2.8 -4.92756 | opp_overlap 3259261, overlap 3259263 CAAAGACCTAACCCT CCATGA TGG TGATGG TTTATTTTTGCTAGT YPN_2899 3259191 - 3260390 + | prophage integrase TERM 3596 3260882 - 3260870 - g 73 -6.3 -4.47707 | opp_overlap 3260869 CCTCACTAAAAACAA CAAGT TAA ACTTG GCTTCATATAAACTG YPN_2900 3260469 - 3261557 + | hypothetical protein TERM 3597 3261762 - 3261776 + G 76 -4.2 -5.03747 | overlap 3261764 TGATTTTTTGGACTT TTGGCT GTG AGCCCA TTTTTTCCGAGGTTT TERM 3598 3262343 - 3262327 - g 89 -2.3 -5.73339 | overlap 3262336 AGAATCAGAAAAAAA CAAAAAA AAC CTTCTTG AAGAAAGAACTAACT TERM 3599 3262350 - 3262336 - g 100 -5 -6.47325 | overlap 3262327 AAAAAACAAAAAAAA CCTTCT TGA AGAAAG AACTAACTTAAGAGT TERM 3600 3262389 - 3262374 - g 83 -5.4 -5.09173 | overlap 3262376 3262377 TAAGAGTTGAAAAAA TACGAC TTGA GTCGCA AATCAAATTAGCCAA TERM 3601 3262577 - 3262555 - g 73 -3.4 -5.055 | GGAACTTGCAAAAAA CCAACTCGAA TCC TTAGAGTCAG AAGTCAACGGAATAA TERM 3602 3262890 - 3262880 - g 70 -2.6 -4.91357 | AAATACATAACAAAA TTAA AAG TTAA CGTTGACATATCTAA YPN_2901 3261608 - 3263278 + | hypothetical protein TERM 3603 3263423 - 3263465 + T 78 -7.1 -4.57569 | opp_overlap 3263439 CAGTTGTTTTAGCCG GGGCGTTGCATGCAAAT TCATGCACT ATATGCATGCAGTGCTC TTTTTGGCAGGCTAG YPN_2902 3263667 - 3263440 - | hypothetical protein YPN_2903 3264130 - 3264453 + | hypothetical protein YPN_2904 3264475 - 3265362 + | putative DNA-binding prophage protein YPN_2905 3265355 - 3265555 + | transcriptional regulator YPN_2906 3265555 - 3266097 + | prophage protein YPN_2907 3266090 - 3267049 + | prophage DNA primase YPN_2908 3267046 - 3268134 + | regulatory prophage protein YPN_2909 3268797 - 3268483 - | DNA-binding prophage protein TERM 3604 3268536 - 3268547 + g 74 -4.4 -4.88228 | opp_overlap 3268536 CCGTTGCAGATACCA CACT AAGC AGTG TTTTTAGTGTTGGAT YPN_2910 3269120 - 3268803 - | prophage protein TERM 3605 3269129 - 3269146 + H 80 -9.9 -3.58305 | opp_overlap 3269128 3269126 TTTTCATCAATATAT TGTAGCC TTTA GGCTACA TTTCGCAAGTTGATT TERM 3606 3269399 - 3269425 + H 100 -12.2 -5.4492 | opp_overlap 3269393 3269399 GGTGAAGTACGGAAA GCCCGCATCCCT TCT AGGTTTGCGGGC TTTTTTGTGTCTGTA TERM 3607 3269425 - 3269399 - H 93 -12.2 -3.71527 | opp_overlap 3269399, overlap 3269393 GGTGAAGTACGGAAA GCCCGCATCCCT TCT AGGTTTGCGGGC TTTTTTGTGTCTGTA YPN_2911 3269535 - 3269711 + | hypothetical protein TERM 3608 3269703 - 3269721 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_2912 3269725 - 3270747 + | transposase for insertion sequence IS100 TERM 3609 3270828 - 3270814 - g 77 -11.4 -3.3506 | overlap 3270805 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_2913 3270747 - 3271526 + | transposase/IS protein YPN_2914 3271810 - 3271577 - | hypothetical protein YPN_2915 3272149 - 3273633 + | permease TERM 3610 3273653 - 3273679 + T 100 -15.3 -3.52113 | opp_overlap 3273653 AGCAGAAACGACAAA GCCCTGAGTTA TTACT TAACTCAGGGC TTCTAAATTTTGGCG TERM 3611 3273679 - 3273653 - T 100 -15.3 -4.18303 | opp_overlap 3273653 AGCAGAAACGACAAA GCCCTGAGTTA TTACT TAACTCAGGGC TTCTAAATTTTGGCG YPN_2916 3274643 - 3273879 - | DNA polymerase III subunit epsilon TERM 3612 3274994 - 3274974 - g 74 -2.4 -5.11033 | overlap 3274975 3274976 CATAACTGGAAAAAA CGCGGCTG GAAAA CAGCCGAT CGTAAGCCAGTGCGC rnhA 3274713 - 3275177 + | ribonuclease H YPN_2918 3275951 - 3275232 - | hypothetical protein TERM 3613 3275374 - 3275400 + g 75 -8.7 -3.9461 | overlap 3275375 CATCCCAACGCAGGC AGGTGGGTACT GATAA AGTGCCCACCG TTCTTATTGAAGGGC TERM 3614 3275375 - 3275399 + g 76 -12.2 -2.96444 | overlap 3275374 ATCCCAACGCAGGCA GGTGGGTACT GATAA AGTGCCCACC GTTCTTATTGAAGGG TERM 3615 3276280 - 3276245 - g 76 -3.2 -5.07107 | overlap 3276247 3276268 GAAACTGCGAAAAAA GGGGCCACCGTCAT TGTTAATG ATGGCGATAGCCTC ACCATTGCCGGACAA YPN_2919 3275996 - 3276751 + | hydroxyacylglutathione hydrolase TERM 3616 3277582 - 3277550 - g 76 -7 -4.58395 | TTTATGTTCCAAAAA TGCTGGCCTTGGGT GATTT ACTCAAGAACAGCA AAAAGTACGGTATAA YPN_2920 3276784 - 3278211 + | membrane-bound lytic murein transglycosylase D TERM 3617 3278226 - 3278255 + T 77 -10.9 -2.75481 | opp_overlap 3278233, overlap 3278233 GAGCCAGAATCACTG TCAAAAAGCACCT TTCG AGGTGCTTTTTTA TGGTTGGAATTCGAC TERM 3618 3278248 - 3278233 - T 100 -9 -4.60889 | opp_overlap 3278226 3278233 AATCACTGTCAAAAA GCACCT TTCG AGGTGC TTTTTTATGGTTGGA TERM 3619 3278233 - 3278248 + T 100 -9 -5.37345 | opp_overlap 3278233, overlap 3278226 AATCACTGTCAAAAA GCACCT TTCG AGGTGC TTTTTTATGGTTGGA YPN_2921 3279014 - 3278253 - | hypothetical protein TERM 3620 3278363 - 3278349 - G 76 -3.4 -5.13354 | overlap 3278351 GCGATAAAAAATAAA GTCCAG AGG CCGGCC GAACGCACGACTGCG YPN_2922 3279860 - 3279396 - | hypothetical protein TERM 3621 3279870 - 3279852 - G 100 -9.6 -5.83211 | CACCAAAATAAAAAA CCACCTCA ATG TAAGGTGG CTCGTCCAGTGTCTT dkgB 3280698 - 3279895 - | 2,5-diketo-D-gluconate reductase B TERM 3622 3280550 - 3280576 + g 71 -5.1 -4.47397 | overlap 3280555 TTAATACCACTTTCT TGGATTGCCTG ACCAA CAGGCGCTTCA TTTTCATATATTTGT TERM 3623 3281024 - 3281044 + H 100 -14.1 -4.14739 | opp_overlap 3281024 TATAAATGCAAAAAA CCCTGAATC TAA GATTCAGGG TTTTGCAATAAGTGG TERM 3624 3281044 - 3281024 - H 100 -14.1 -5.24449 | opp_overlap 3281024 TATAAATGCAAAAAA CCCTGAATC TAA GATTCAGGG TTTTGCAATAAGTGG TERM 3625 3281479 - 3281469 - H 74 -6.8 -4.27316 | opp_overlap 3281469 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 3626 3282591 - 3282602 + H 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 3627 3282638 - 3282664 + H 70 -9.4 -2.75844 | opp_overlap 3282614 3282616, overlap 3282637 3282640 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 3628 3283098 - 3283116 + H 82 -10.3 -3.57798 | overlap 3283091 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 3629 3284554 - 3284591 + H 78 -5.7 -4.7629 | opp_overlap 3284554 3284548 3284557, overlap 3284557 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 3630 3284557 - 3284588 + H 78 -7.4 -4.47888 | opp_overlap 3284557 3284554 3284548, overlap 3284554 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA YPN_2924 3286403 - 3286588 + | hypothetical protein YPN_2925 3287405 - 3286839 - | D,D-heptose 1,7-bisphosphate phosphatase metN 3287592 - 3288623 + | DL-methionine transporter ATP-binding subunit TERM 3631 3289034 - 3289023 - g 74 -4.4 -4.79223 | GCAGATCATCAAAAA GGTA TTAT TACC AGAAGCCCTGCCCGG YPN_2927 3288616 - 3289269 + | DL-methionine transporter permease subunit metQ 3289333 - 3290148 + | DL-methionine transporter substrate-binding subunit TERM 3632 3290181 - 3290204 + F 100 -16.8 -3.97674 | opp_overlap 3290184, overlap 3290184 TATTGAATATATCGA CAAGACGGGC TATA GCCCGTCTTG TTATTTGAATAATAG TERM 3633 3290201 - 3290184 - f 100 -12.7 -3.42583 | opp_overlap 3290181 3290184 TGAATATATCGACAA GACGGGC TATA GCCCGTC TTGTTATTTGAATAA TERM 3634 3290184 - 3290201 + F 100 -12.7 -4.10744 | opp_overlap 3290184, overlap 3290181 TGAATATATCGACAA GACGGGC TATA GCCCGTC TTGTTATTTGAATAA rcsF 3290266 - 3290673 + | outer membrane lipoprotein TERM 3635 3290746 - 3290726 - g 74 -3.9 -4.99645 | overlap 3290728 ACCGTATAAAGAAAA GTTTGCGGT ACC ACGGCAACC CGGTTTGGTTGAGGA YPN_2930 3290670 - 3291377 + | hypothetical protein TERM 3636 3293135 - 3293124 - g 86 -5.8 -5.09762 | AGTGGAATACAAAAA CCGA CGCG TCGG TGAGAAACAAATGAT YPN_2931 3291481 - 3293199 + | prolyl-tRNA synthetase TERM 3637 3293275 - 3293310 + T 76 -7.7 -4.23999 | gap 2, opp_overlap 3293278 GGGTATTTTACTGAT GAAGCCGC-CGG-AG AACTTGAA CTACCGTGCGGCTTC TTATTTTAGCTATGG YPN_2932 3294016 - 3293333 - | lipoprotein involved with copper homeostasis and adhesion YPN_2933 3294541 - 3294101 - | hypothetical protein TERM 3638 3294529 - 3294554 + g 70 -9.1 -3.6445 | overlap 3294530 3294532 ACACACTTATTGCCC GTAGTTTTGCC ATTC GGCAAAACTAA TTTCCAGATTATTCT TERM 3639 3294530 - 3294553 + g 77 -12.6 -2.77947 | overlap 3294529 3294532 CACACTTATTGCCCG TAGTTTTGCC ATTC GGCAAAACTA ATTTCCAGATTATTC TERM 3640 3294532 - 3294551 + g 70 -10.8 -2.92935 | overlap 3294530 3294529 CACTTATTGCCCGTA GTTTTGCC ATTC GGCAAAAC TAATTTCCAGATTAT YPN_2934 3295068 - 3294520 - | hypothetical protein TERM 3641 3295474 - 3295459 - g 77 -11.8 -3.08679 | opp_overlap 3295460 CTCCGTTAGGGAACA GGCGGC CTAT GCCGCC GCTAACTTATTGGTG YPN_2935 3295310 - 3295510 + | hypothetical protein YPN_2936 3295497 - 3295757 + | Rho-binding antiterminator TERM 3642 3295772 - 3295807 + T 100 -17 -4.1043 | opp_overlap 3295779, overlap 3295779 GTTTCCACTTCCTTG TGAAAAACGGGTCGCT GAAG AGCGGCCCGTTTTGCA TTTATCCTATTTACA TERM 3643 3295779 - 3295800 + T 100 -13.7 -4.40173 | opp_overlap 3295779, overlap 3295772 CTTCCTTGTGAAAAA CGGGTCGCT GAAG AGCGGCCCG TTTTGCATTTATCCT TERM 3644 3295800 - 3295779 - T 100 -11.5 -4.56597 | opp_overlap 3295779 3295772 CTTCCTTGTGAAAAA CGGGTCGCT GAAG AGCGGCCCG TTTTGCATTTATCCT YPN_2937 3296339 - 3296022 - | cytochrome tilS 3297958 - 3296576 - | tRNA(Ile)-lysidine synthetase TERM 3645 3296716 - 3296696 - G 75 -9 -3.84185 | TTCACCGAAATATAA CAGCGGAA TACGT TCCCGCTG CCATGGGGGAATACC YPN_2939 3298358 - 3297960 - | hypothetical protein TERM 3646 3298519 - 3298497 - R 100 -5.5 -6.08563 | opp_overlap 3298497 3298505 3298510 AATAGATAAAAAAAA CCGGCGC TTAAATTCC GCACCGG CTTTTATCAGTTGGC YPN_2940 3299501 - 3298542 - | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 3647 3298731 - 3298754 + g 76 -11 -3.31792 | CTTCAGTTCTTTTAG GCGATGTGCA GTAA TGCCCATCGC TTCTGCGGCTAATGG TERM 3648 3299418 - 3299446 + g 71 -6.8 -4.27584 | gap 1 ATCTAATTTTTCGTC TTGAC-GGCTGAC TGCA GTCAGCGAGTCAA TTTTCGCTTCCAGCT dnaE 3303029 - 3299514 - | DNA polymerase III subunit alpha TERM 3649 3300368 - 3300378 + g 76 -5.4 -4.8048 | opp_overlap 3300368 GTTTTTCTAAAATAC GCTT GTT AAGC TTTTTGGTATCGACA TERM 3650 3300826 - 3300849 + g 83 -5.2 -5.07486 | opp_overlap 3300826, overlap 3300828 TCTTCAAATACAGAA CGCTGCTTAG CCAT CTCAGCAGGG TTTTTCTTACCCATG TERM 3651 3301648 - 3301635 - G 71 -6.7 -4.25056 | overlap 3301639 GATCCGATCAACAAA GCCAT AGGG ATGGC CTAATACACGGCCGA TERM 3652 3302095 - 3302111 + g 76 -5.1 -4.82901 | overlap 3302096 AATTCCAAACGTTCT TCCAAAC CTT GTTTGGC TTTTTCTACCAGAAA rnhB 3303755 - 3303159 - | ribonuclease HII TERM 3653 3303580 - 3303608 + g 80 -2.3 -5.50499 | overlap 3303581 3303582 3303584 TCAGTGATTTCGTCA TACAGTGACAGGC GGC GCTTCTCGCTGAG TTTTTTTGAATCTGC lpxB 3304936 - 3303752 - | lipid-A-disaccharide synthase YPN_2944 3305728 - 3304940 - | UDP-N-acetylglucosamine acyltransferase fabZ 3306262 - 3305732 - | (3R)-hydroxymyristoyl-ACP dehydratase TERM 3654 3306297 - 3306285 - R 70 -2.7 -5.00616 | overlap 3306286 TTCCTGTCTAAAAAA CTGAT GCT ATCAA CAACACGGCCTGCAC lpxD 3307442 - 3306420 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 3655 3307393 - 3307361 - G 70 -11.4 -2.63823 | gap 1, overlap 3307349 3307358 3307357 AATGCATAGAAGCGA TGC-CGGTGATGACA AGAT CGCCATCACCGTGCA CCTGTGCATCCAACT YPN_2947 3307994 - 3307446 - | periplasmic chaperone TERM 3656 3307564 - 3307582 + g 70 -4.6 -4.6759 | opp_overlap 3307564 3307559 ACAGATTTAACAGCA TCCTGA ATACGGC TCAGGA TTTTGTTACGCTCTT YPN_2948 3310488 - 3308101 - | outer membrane protein assembly factor YaeT TERM 3657 3309478 - 3309488 + g 71 -5.4 -4.49311 | overlap 3309459 ATCCACGTTGATATG CAGT TTA ACTG TTTTATCGTCATCAT YPN_2949 3311880 - 3310525 - | zinc metallopeptidase cdsA 3312757 - 3311909 - | CDP-diglyceride synthase YPN_2951 3313525 - 3312767 - | undecaprenyl pyrophosphate synthetase TERM 3658 3313282 - 3313270 - G 83 -5.5 -5.06414 | GTGCTCGAACAAAAA GCTCC ATC AGAGC GGTCACTTCTTGGTC TERM 3659 3313614 - 3313595 - R 100 -8.6 -5.63504 | gap 1, opp_overlap 3313595, overlap 3313607 AAGTGCACAAAAAAA GCCGTGTAC CAA GT-CACGGC TTCTGGAGTGACAGC YPN_2952 3314945 - 3313749 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 3660 3315144 - 3315115 - R 100 -11.5 -5.44721 | gap 1, opp_overlap 3315120, overlap 3315120 ATGACCGGAAAAAAA GCA-AAGCGCCGCC TAA GGCGACGCTTATAC AATGCGAGTAGAGAT TERM 3661 3315138 - 3315120 - R 100 -13.8 -4.5187 | opp_overlap 3315120, overlap 3315115 CGGAAAAAAAGCAAA GCGCCGCC TAA GGCGACGC TTATACAATGCGAGT TERM 3662 3315120 - 3315138 + r 86 -11.6 -3.32963 | opp_overlap 3315120 3315115 CGGAAAAAAAGCAAA GCGCCGCC TAA GGCGACGC TTATACAATGCGAGT frr 3315716 - 3315159 - | ribosome recycling factor TERM 3663 3315652 - 3315671 + g 70 -4.4 -4.65895 | gap 1, overlap 3315652 3315653 ATTTTACTAATGTGG T-TCTGGAA TGC TTCCAGACA TTTTTCCATGCGCAC pyrH 3316577 - 3315852 - | uridylate kinase TERM 3664 3315893 - 3315911 + g 71 -5.8 -4.33153 | opp_overlap 3315895, overlap 3315895 TCTCACCCATCACCA CACGACGC AAA GCGCCGGG TTTATTCATGTTGAA TERM 3665 3316194 - 3316181 - G 73 -5.3 -4.72986 | TACCCGCAGCAAAAA TAACC ACAC GGTTA TGACGCAGCAAGCTA TERM 3666 3316776 - 3316753 - RH 100 -12.4 -4.68384 | opp_overlap 3316753 ATCGAGTGAATAAAA TGGAACCGCC TATT GGCGGCCCCA TTTGGAGCATTAAGA TERM 3667 3316753 - 3316776 + rH 70 -8 -3.57561 | opp_overlap 3316753 ATCGAGTGAATAAAA TGGAACCGCC TATT GGCGGCCCCA TTTGGAGCATTAAGA tsf 3317643 - 3316786 - | elongation factor Ts TERM 3668 3317715 - 3317697 - gR 100 -16 -3.74792 | CATTAGATATGCAAA GGGGGCCT ATA AGGCCCCC CTAACCAACATATTT TERM 3669 3317778 - 3317790 + Gr 76 -7.7 -4.16842 | CGGACTTATTATTCA GCTTC TAC GAAGC TTTCTTCCGCCTGAA rpsB 3318496 - 3317771 - | 30S ribosomal protein S2 YPN_2955 3316765 - 3317844 + | hypothetical protein YPN_2958 3318931 - 3319722 + | methionine aminopeptidase TERM 3670 3319732 - 3319746 + F 100 -12.8 -5.26316 | opp_overlap 3319726 3319732 GAGTAATAATGACAA GCCGGC ACC GCCGGC TTTTTTATGGGCTGC TERM 3671 3319746 - 3319732 - f 100 -12.8 -3.6216 | opp_overlap 3319732, overlap 3319726 GAGTAATAATGACAA GCCGGC ACC GCCGGC TTTTTTATGGGCTGC TERM 3672 3321667 - 3321657 - g 70 -4.6 -4.65895 | TTTGCGACCGAAAAA CAGC TAC GCCG CGGAATGCAAAATAG YPN_2959 3319782 - 3322463 + | PII uridylyl-transferase dapD 3322638 - 3323462 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 3673 3323472 - 3323492 + F 100 -8.3 -5.60993 | opp_overlap 3323471 3323469 3323472 3323474 GACTAAGATTAAGAG TAGCGGG CTAACCA CCCGCTA TTTTTTTGTGCCCAG TERM 3674 3323512 - 3323530 + F 100 -16 -3.07307 | opp_overlap 3323512 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3675 3323530 - 3323512 - f 100 -16 -4.36914 | opp_overlap 3323512 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_2961 3323643 - 3324101 + | transposase for the IS1541 insertion element TERM 3676 3324179 - 3324203 + F 100 -9.9 -4.50159 | opp_overlap 3324182, overlap 3324181 3324182 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGCCTTACG TERM 3677 3324181 - 3324201 + F 100 -12.5 -3.8535 | opp_overlap 3324182, overlap 3324179 3324182 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGCCTTA TERM 3678 3324182 - 3324200 + F 100 -16 -2.90126 | opp_overlap 3324182, overlap 3324181 3324179 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCTT TERM 3679 3324200 - 3324182 - f 100 -16 -4.8048 | opp_overlap 3324182 3324181 3324179 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGCCTT TERM 3680 3324620 - 3324595 - g 80 -2.5 -5.46706 | ATTTGAAAAGAAAAA TTCTGGATGAC CTAC GTCACCTGGAA AGTGTTGTCACCAAT YPN_2962 3324297 - 3324686 + | hypothetical protein TERM 3681 3324755 - 3324720 - T 86 -12.1 -3.17194 | overlap 3324722 ACCTCGGTAACCGAA TACGTATTGTGACAA CGAAAC TTGCCACAATACGCA ATAAAATCAAGATAT TERM 3682 3324753 - 3324722 - T 93 -12.5 -3.14878 | overlap 3324720 CTCGGTAACCGAATA CGTATTGTGACAA CGAAAC TTGCCACAATACG CAATAAAATCAAGAT YPN_2963 3325225 - 3324776 - | flavodoxin YPN_2964 3326026 - 3325253 - | tRNA pseudouridine synthase C YPN_2965 3326358 - 3326026 - | hypothetical protein TERM 3683 3326542 - 3326502 - R 100 -11.9 -6.17669 | opp_overlap 3326513, overlap 3326512 3326513 AACAAAACAAAAAAA CAAATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATG CGCCTATAAGGCTCT TERM 3684 3326532 - 3326512 - R 100 -12.5 -4.05342 | opp_overlap 3326513, overlap 3326502 3326513 AAAAACAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3685 3326531 - 3326513 - R 100 -16 -2.99545 | opp_overlap 3326513, overlap 3326512 3326502 AAAACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3686 3326513 - 3326531 + r 100 -16 -4.8048 | opp_overlap 3326513 3326512 3326502 AAAACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_2966 3327070 - 3326612 - | transposase for the IS1541 insertion element TERM 3687 3327183 - 3327201 + r 100 -16 -4.36914 | opp_overlap 3327183 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3688 3327201 - 3327183 - R 100 -16 -3.07307 | opp_overlap 3327183 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3689 3327243 - 3327220 - R 100 -12.5 -5.24129 | opp_overlap 3327217 3327216 3327220 TCTGGGCACAAAAAA GGGGTACTG TTTTAC CAGTACCCC TCAATTCGTTTTATA TERM 3690 3327220 - 3327243 + r 88 -12.5 -2.67189 | opp_overlap 3327220, overlap 3327217 3327216 TCTGGGCACAAAAAA GGGGTACTG TTTTAC CAGTACCCC TCAATTCGTTTTATA YPN_2967 3328311 - 3327760 - | SecY interacting protein Syd queF 3328443 - 3329288 + | 7-cyano-7-deazaguanine reductase TERM 3691 3329824 - 3329836 + G 72 -4.1 -4.90471 | GAGCTCCAGTCATTT GACTA ACC TGGTC TTTTCTATTTTACGT TERM 3692 3330454 - 3330477 + G 75 -10.3 -3.42354 | opp_overlap 3330452 3330454 3330457 GCCACTGGTGAAAGA GTATCGCCG TAATAC CGGCGATGC TTATAGCTTCAACTG YPN_2969 3329441 - 3330805 + | hypothetical protein TERM 3693 3330894 - 3330881 - f 75 -3.1 -5.1861 | TTGAGCAGCAAAAAA TGACA AATC TGCCA AGAGTAAATTTAAAT xni 3331065 - 3331820 + | exonuclease IX TERM 3694 3331858 - 3331835 - T 100 -14.6 -4.90455 | ATATACGCATAAAAA CTAAGGGGCC AATA GGCCCCTCAG ACTGCTGACAAACCC TERM 3695 3331943 - 3331917 - T 84 -10.1 -3.82218 | gap 1, overlap 3331918 3331933 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACTACATGG TERM 3696 3331944 - 3331918 - T 72 -10.1 -2.88849 | gap 1, overlap 3331917 3331933 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACTACATGGA TERM 3697 3332025 - 3332040 + T 86 -11.8 -3.16154 | opp_overlap 3332021 3332020 TTGTCAATAACCTCA GGGGCC AACA GGCCCC TTAAATATGATGTTA YPN_2971 3333177 - 3332071 - | putative RNA 2'-O-ribose methyltransferase YPN_2972 3333565 - 3333170 - | hypothetical protein TERM 3698 3333268 - 3333226 - G 73 -6.2 -4.46404 | opp_overlap 3333248 3333250, overlap 3333230 CAATCAACATCAAAA TCCATCCCGCCAGAAAACAG ACT CCGCCTACTGGCGTGATATA TATCCACAGTCTCAG TERM 3699 3333537 - 3333525 - G 100 -9.1 -5.47431 | GCAACATAGAAAAAA CCGCT CAG AGCGG AAAATATCAGCATTA YPN_2973 3334648 - 3333731 - | DNA-binding transcriptional activator GcvA TERM 3700 3334882 - 3334900 + H 84 -3.8 -5.54192 | opp_overlap 3334885, overlap 3334883 3334885 TCTGGTATGCCAGAC ATAGTAGC TAA GCTACTGC TTTTTTTCACTTCCT TERM 3701 3334883 - 3334899 + H 72 -7.3 -3.90888 | opp_overlap 3334885, overlap 3334882 3334885 CTGGTATGCCAGACA TAGTAGC TAA GCTACTG CTTTTTTTCACTTCC TERM 3702 3334953 - 3334973 + H 100 -9.7 -6.00086 | TAGTGATTTTATGCA GCACCGTTA TTT TGGCGGTGC TTTTTTTTATCCTAT YPN_2974 3335209 - 3336513 + | cysteine sulfinate desulfinase YPN_2975 3336648 - 3337091 + | hypothetical protein YPN_2976 3337954 - 3337127 - | hypothetical protein TERM 3703 3337219 - 3337208 - G 71 -5.8 -4.31895 | AGACACAGCAACAAA GCCA AACG TGGC AGTAACCATCGTTGC TERM 3704 3338058 - 3338043 - R 100 -11.8 -4.20084 | opp_overlap 3338043 AGTACTCATGCAAAA GCGGCC AACT GGCCGC TTAATCAAAACAAAT TERM 3705 3338043 - 3338058 + r 86 -11.8 -3.14211 | opp_overlap 3338043 AGTACTCATGCAAAA GCGGCC AACT GGCCGC TTAATCAAAACAAAT mltA 3339269 - 3338097 - | murein transglycosylase A TERM 3706 3338139 - 3338162 + g 75 -8.8 -3.86897 | gap 1 TGACGAATCATTACT GGTAGGCTCGC TCT GCGTGCC-ACC TTTATAAGCAGTGAA TERM 3707 3339792 - 3339805 + r 100 -8.1 -6.02919 | opp_overlap 3339792 GATATCATCATTAGA CACCC TATC GGGTG TTTTTTTGTTTCTGG YPN_2978 3341241 - 3339991 - | N-acetylmuramoyl-L-alanine amidase AmiC precursor YPN_2979 3341477 - 3342802 + | N-acetylglutamate synthase TERM 3708 3342933 - 3342956 + T 75 -8.8 -3.66772 | opp_overlap 3342934, overlap 3342934 TATTTGAAACAGATA ACTCAGGGCG CTTA TGCCCTGAGA TTATTGGCGATTTAA TERM 3709 3342934 - 3342955 + T 89 -12.3 -2.79581 | opp_overlap 3342934, overlap 3342933 ATTTGAAACAGATAA CTCAGGGCG CTTA TGCCCTGAG ATTATTGGCGATTTA TERM 3710 3342955 - 3342934 - T 95 -11.6 -3.76634 | opp_overlap 3342934 3342933 ATTTGAAACAGATAA CTCAGGGC GCTTAT GCCCTGAG ATTATTGGCGATTTA RecD 3344915 - 3342957 - | exonuclease V subunit alpha TERM 3711 3343071 - 3343055 - G 71 -6.5 -4.1552 | overlap 3343056 CATCGCTGCAATAAA GCGTCAG ATG CTGACGG GCGCGGGTAATGGCG RecB 3348574 - 3344912 - | exonuclease V subunit beta TERM 3712 3347533 - 3347545 + g 70 -3.3 -4.79223 | CATCAAACCCCAGCT CTGCA CGC TGCCG TTTTTCCTGCTGTAC YPN_2982 3351459 - 3348571 - | protease III precursor TERM 3713 3349135 - 3349123 - G 70 -9.1 -3.61715 | GATCTGCCCTAACAA GGCAC TAC GTGCC ATACCAGCAATTTCT TERM 3714 3350276 - 3350294 + g 95 -6 -5.52986 | AGATTCAATACATGT GCAATTTC ATC GAAATAGC TTTTTTTAATCCCCT TERM 3715 3350354 - 3350340 - G 78 -6.4 -4.88407 | TGATGTAATCAAAAA TTGCCG CGA CGACAA CATCACGTTGTGCCA recC 3354912 - 3351541 - | exonuclease V subunit gamma YPN_2984 3355457 - 3355047 - | prepilin peptidase dependent protein YPN_2985 3355915 - 3355445 - | hypothetical protein YPN_2986 3356520 - 3355912 - | hypothetical protein YPN_2987 3357080 - 3356511 - | hypothetical protein TERM 3716 3357002 - 3357014 + g 76 -4.9 -5.04601 | TTATTAGTGATCTTT GTTTT ATA AAAAC TTTTTGCTTTCTAAG TERM 3717 3357184 - 3357199 + r 74 -4.7 -4.82901 | AAATACAGGGAGGTC TGCGA TACGAC TCGCA TTTTTATCGGAAGAC TERM 3718 3357298 - 3357280 - R 86 -8.8 -4.36485 | ATAAAAGACGCAAAA CGGAGCCA TTA CAGCTCCG ATATGAAGATTAAAT thyA 3358102 - 3357308 - | thymidylate synthase TERM 3719 3357680 - 3357659 - G 82 -7.3 -4.6902 | gap 1, opp_overlap 3357659 3357668, overlap 3357663 GTAGAACTGGAAAAA GGCA-TGGCA TGG TGCCAACGCC ATTTGATCCAGTTCG YPN_2989 3358981 - 3358109 - | prolipoprotein diacylglyceryl transferase YPN_2990 3361478 - 3359232 - | fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein TERM 3720 3361318 - 3361288 - G 76 -12.5 -2.62983 | opp_overlap 3361288 3361289, overlap 3361277 GCCAGCGTGATAGTA CGCCCACGGGGCT TTTTC AGCCCCCTGGTCG CCATTAGGTAGTAAC TERM 3721 3361289 - 3361299 + g 82 -8.2 -4.57073 | opp_overlap 3361277 3361288, overlap 3361288 CCAGCGTGATAGTAC GCCC ACG GGGC TTTTTCAGCCCCCTG YPN_2991 3362018 - 3361491 - | dinucleoside polyphosphate hydrolase TERM 3722 3362438 - 3362428 - H 81 -5.4 -5.10497 | AAGTTACGCAAAAAA GAGT AAA ACTC GCAAAAAAGCCTCTC TERM 3723 3362461 - 3362447 - H 73 -3.5 -5.08011 | AAAACTCGCAAAAAA GCCTC TCGTC AAGGC TGTAAATTGAACCAG TERM 3724 3363007 - 3362980 - g 71 -5.6 -4.49389 | gap 1 AGTGCACAAGGAAAA CCACTGGAAACGA CAT TCGTCTGC-GTGG CACCACTCACCGGGA YPN_2992 3362716 - 3363402 + | DNA mismatch repair protein TERM 3725 3363508 - 3363488 - f 77 -8.3 -3.96298 | TAGTGATTAATTAAA GCGGGAT GTTCTCT ATCCCGC AGGTGCTTTATATCT TERM 3726 3364046 - 3364034 - g 71 -10.5 -3.1733 | overlap 3364032 3364031 CGCTGGATAAAAGCA CGCGG TTG CCGCG AAAAAATTATTTTAG TERM 3727 3364697 - 3364708 + G 74 -7.2 -4.16842 | overlap 3364681 GCTCTGGCCTTTGTG CGGC AACA GCCG TTTGTTGCCAGTACG YPN_2993 3363809 - 3364849 + | putative aldo-keto reductase TERM 3728 3364904 - 3364889 - f 91 -11.8 -3.43203 | opp_overlap 3364884 3364883 CTATCATAATATGAA GGCCGC TGAT GCGGCC TTGAGGTTATTGACA TERM 3729 3364984 - 3365010 + F 70 -7.2 -3.74872 | gap 1, opp_overlap 3364972, overlap 3364983 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCCCTGCCT TERM 3730 3365067 - 3365096 + F 100 -16.5 -3.02511 | CGGGGTTTGTCAGCA TTCTGAAGGCCGC TGAT GCGGCCTTCAGGG TATTGACAAAGTGCC TERM 3731 3365761 - 3365812 + G 73 -11.8 -2.69964 | gap 1, opp_overlap 3365781, overlap 3365778 TTTCAAAAGGCGATA TTTGTCAGCAGTCTGAA-GGATCTC CTT GAGATCCTTTCAGATGACAGACAAA TCATATCATTCAGGC YPN_2994 3365556 - 3365789 + | hypothetical protein TERM 3732 3365778 - 3365794 + T 84 -10.9 -3.59979 | opp_overlap 3365781, overlap 3365761 TGTCAGCAGTCTGAA GGATCTC CTT GAGATCC TTTCAGATGACAGAC YPN_2995 3367038 - 3365818 - | hypothetical protein TERM 3733 3366236 - 3366215 - G 87 -10.1 -4.38712 | gap 1, overlap 3366216 TTTAGCGTCACAAAA CGGGCGGCGG CAC CCG-CGCCCA CCACAATCCCAATCG TERM 3734 3366235 - 3366216 - G 76 -11.4 -3.22906 | gap 1, overlap 3366215 TTAGCGTCACAAAAC GGGCGGCGG CAC CCG-CGCCC ACCACAATCCCAATC YPN_2996 3368993 - 3367035 - | bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YPN_2997 3369190 - 3368981 - | long-chain-fatty-acid--(acyl-carrier-protein) ligase / acyl-(acyl-carrier-protein)-phospholipid O-acyltransferase TERM 3735 3369322 - 3369305 - R 100 -11.3 -6.11644 | GTACCTAAAAAAAAA CCTACGC ATCT GCGTAGG TCGGTGCAAATAAAA YPN_2998 3371900 - 3369639 - | biotin sulfoxide reductas2 YPN_2999 3372210 - 3373232 + | DNA-binding transcriptional regulator GalR YPN_3000 3374491 - 3373229 - | diaminopimelate decarboxylase TERM 3736 3374235 - 3374249 + g 70 -11.4 -2.64155 | opp_overlap 3374232, overlap 3374232 3374231 CCCGGTTGATAACCC GCGTGC AAG GCACGC TCGATTTCACCCAAA YPN_3001 3374706 - 3375647 + | DNA-binding transcriptional regulator LysR YPN_3002 3376804 - 3375644 - | sugar transport protein YPN_3003 3378081 - 3377173 - | LysR family transcriptional regulator YPN_3004 3378188 - 3379075 + | hypothetical protein YPN_3005 3379188 - 3379823 + | hypothetical protein YPN_3006 3381500 - 3379809 - | methyl-accepting chemotaxis protein TERM 3737 3379841 - 3379871 + g 91 -9.1 -4.84359 | overlap 3379843 CAATAGCAGCAATCG TGCTCTCCTTTGC TAATC GTAGAGGAGAGTA TTTTTCTACAGGTAA TERM 3738 3379843 - 3379869 + g 80 -9.5 -4.04397 | overlap 3379841 ATAGCAGCAATCGTG CTCTCCTTTGC TAATC GTAGAGGAGAG TATTTTTCTACAGGT YPN_3007 3382056 - 3381655 - | hypothetical protein YPN_3008 3382769 - 3382053 - | regulatory membrane protein TERM 3739 3382213 - 3382229 + g 71 -6.7 -4.15703 | opp_overlap 3382213 3382211 TGCTGCTGATAAACA GATAAAA ACG TTTTATC TTGTTCTTTATCCAA YPN_3009 3383053 - 3383358 + | lipoprotein YPN_3010 3384252 - 3383410 - | prepilin peptidase YPN_3011 3384739 - 3384278 - | hypothetical protein YPN_3012 3385926 - 3384736 - | general secretion pathway protein L YPN_3013 3386866 - 3385910 - | general secretion pathway protein K YPN_3014 3387492 - 3386875 - | general secretion pathway protein J YPN_3015 3387808 - 3387464 - | general secretion pathway protein I YPN_3016 3388436 - 3387846 - | general secretion pathway protein H TERM 3740 3387956 - 3387926 - GR 71 -7 -4.09685 | gap 1, overlap 3387945 CTTCATTTCTTAAAA CCA-AGGAGAAGT CCGAAT ACTCCTCCTCTGG AGAGAAAACCAATTG YPN_3017 3388830 - 3388393 - | general secretion pathway protein G TERM 3741 3388627 - 3388610 - GR 84 -9.9 -3.76224 | GGTTTAGTTACTAAA GCAGCAA TGCC TTGCTGC TCGGTCGGATAATCC YPN_3018 3389896 - 3388850 - | general protein secretion protein YPN_3019 3391399 - 3390038 - | general secretion pathway protein E TERM 3742 3391110 - 3391120 + g 82 -4 -5.24129 | opp_overlap 3391110 CCATCAATACGAAAT CTTA CAG TAAG TTTTTTATCGAAAGA YPN_3020 3393468 - 3391546 - | general secretion pathway protein D TERM 3743 3393297 - 3393308 + g 70 -3 -4.79657 | overlap 3393303 CTTGGACCGTAGGAT CTAT GATA ATAG TTTTATTAATATTCT TERM 3744 3393441 - 3393426 - G 89 -2.6 -5.8187 | gap 1, opp_overlap 3393426, overlap 3393427 GAGTGAATAAAAAAA TC-ATCC CAT GGATAGA TTTAATTCCTTTGCC YPN_3021 3394082 - 3393549 - | general secretion pathway protein C TERM 3745 3394019 - 3394029 + g 86 -5.4 -5.30189 | overlap 3394021 GATTACAGTTGAGTG TCCT AAA AGGA TTTTTTAGTCTTATC YPN_3022 3394536 - 3394120 - | hypothetical protein YPN_3023 3396034 - 3395279 - | putative carbonic anhydrase TERM 3746 3396068 - 3396090 + H 88 -9.8 -4.12188 | overlap 3396069 TATAACCCTATTGTA TGCCGGGCAT TTA ATGCACGGCG TTTTAAAGGTAGTAC TERM 3747 3396069 - 3396089 + H 79 -11.1 -3.06991 | overlap 3396068 ATAACCCTATTGTAT GCCGGGCAT TTA ATGCACGGC GTTTTAAAGGTAGTA YPN_3024 3396410 - 3396718 + | hypothetical protein YPN_3025 3397321 - 3398271 + | hypothetical protein YPN_3026 3398386 - 3400572 + | hypothetical protein TERM 3748 3402877 - 3402897 + G 75 -9.1 -3.87149 | opp_overlap 3402885 3402886 CACTCATCACTAAGT GGCAAATAT GGC ATGTTTGCC TTTAAATTTGATGCG YPN_3027 3400642 - 3403755 + | hypothetical protein TERM 3749 3403831 - 3403797 - f 79 -7.9 -4.33274 | gap 1, opp_overlap 3403801 3403802, overlap 3403799 3403802 GTTACATGATTAAAA CATGAC-TCAGGGCGC TTAG GCGCCCTGAGGTTATT GTGCCCAGAAAACCC TERM 3750 3403829 - 3403799 - f 86 -10.5 -3.76811 | gap 1, opp_overlap 3403801 3403802, overlap 3403797 3403802 TACATGATTAAAACA TGAC-TCAGGGCGC TTAG GCGCCCTGAGGTTA TTGTGCCCAGAAAAC TERM 3751 3403801 - 3403826 + F 100 -14.7 -3.78934 | opp_overlap 3403799 3403797 3403802, overlap 3403802 CATGATTAAAACATG ACTCAGGGCGC TTAG GCGCCCTGAGG TTATTGTGCCCAGAA TERM 3752 3403802 - 3403825 + F 100 -18.2 -2.87146 | opp_overlap 3403799 3403797 3403802, overlap 3403801 ATGATTAAAACATGA CTCAGGGCGC TTAG GCGCCCTGAG GTTATTGTGCCCAGA TERM 3753 3403825 - 3403802 - f 100 -18.2 -2.96723 | opp_overlap 3403802 3403801, overlap 3403799 3403797 ATGATTAAAACATGA CTCAGGGCGC TTAG GCGCCCTGAG GTTATTGTGCCCAGA TERM 3754 3403844 - 3403862 + F 100 -16 -3.07307 | opp_overlap 3403844 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3755 3403862 - 3403844 - f 100 -16 -4.37092 | opp_overlap 3403844 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_3028 3403924 - 3404049 + | transposase for the IS1541 insertion element YPN_3029 3404879 - 3404100 - | transposase/IS protein TERM 3756 3404798 - 3404812 + g 77 -11.4 -3.3506 | overlap 3404811 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_3030 3405901 - 3404879 - | transposase for insertion sequence IS100 TERM 3757 3405923 - 3405905 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_3031 3405958 - 3406392 + | transposase TERM 3758 3406470 - 3406494 + T 88 -9.9 -4.1552 | opp_overlap 3406473, overlap 3406472 3406473 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGACAAAGTG TERM 3759 3406472 - 3406492 + T 100 -12.5 -3.6761 | opp_overlap 3406473, overlap 3406470 3406473 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGACAAAG TERM 3760 3406491 - 3406473 - T 100 -16 -4.8048 | opp_overlap 3406473 3406472 3406470 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACAAA TERM 3761 3406473 - 3406491 + T 100 -16 -2.80244 | opp_overlap 3406473, overlap 3406472 3406470 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACAAA TERM 3762 3406568 - 3406594 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3406557, overlap 3406563 3406569 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3763 3406569 - 3406595 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3406557, overlap 3406563 3406568 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3764 3406658 - 3406673 + T 100 -11.8 -4.91084 | TTGTCAGCAGTCTGC GGGCGC TTAG GCGCCC TTTTATTATTAGGTC TERM 3765 3406822 - 3406793 - T 100 -14.5 -3.44206 | gap 1 CAAGATCCACGATAA CCTCTTCCTGAGCA GAT TG-TCAGGAAGAGG AAGTCAGCCGTCGAT YPN_3032 3408397 - 3406844 - | sulfatase YPN_3033 3409237 - 3410013 + | DeoR family regulatory protein TERM 3766 3410373 - 3410347 - g 80 -10.2 -3.79747 | overlap 3410348 CCATTTAGGACCAAA CCGTTGGCAG CACTTGC CTGCCAACGA AGCCATGGCGCATGC TERM 3767 3410372 - 3410348 - g 73 -11.5 -2.87527 | overlap 3410347 CATTTAGGACCAAAC CGTTGGCAG CACTTGC CTGCCAACG AAGCCATGGCGCATG YPN_3034 3410063 - 3411361 + | tagatose 6-phosphate kinase TERM 3768 3411517 - 3411535 + G 71 -5.8 -4.41633 | overlap 3411514 3411518 CTGCATCAGGCATTA GCCGCGAG TAA CACGCGGA TTATTTTTACCGGTG YPN_3035 3411358 - 3412524 + | phosphosugar isomerase YPN_3036 3412542 - 3413039 + | PTS transport protein YPN_3037 3413086 - 3413874 + | PTS permease protein TERM 3769 3414109 - 3414090 - g 76 -6.4 -4.63218 | opp_overlap 3414089, overlap 3414092 CCGCGTTGAAGAAAA TCCACGGT AACA ACCGTGCA GATTTGGCGAAATCG YPN_3038 3413864 - 3414754 + | PTS permease protein YPN_3039 3414840 - 3415280 + | PTS permease protein TERM 3770 3415661 - 3415671 + G 74 -6.8 -4.36914 | ACCCGCACCGCAACC CTGC TCG GCAG TTTTCTGGAGGGGCC YPN_3040 3415283 - 3416449 + | acetylglucosamine-6-phosphate deacetylase YPN_3041 3416645 - 3417400 + | 2-deoxy-D-gluconate 3-dehydrogenase TERM 3771 3418225 - 3418240 + G 79 -6.8 -4.63932 | opp_overlap 3418224 TCCTGCCCCAGAGAG CAGTGC AACA GCGCTG TTTTGTTACGGGCTG YPN_3042 3417416 - 3418474 + | hypothetical protein TERM 3772 3418547 - 3418566 + F 100 -12.2 -5.24531 | ATTTTGTTGCACTGG CGCACATC ACCT GATGTGCG TTTTTTATAGGCGAT YPN_3043 3418718 - 3419944 + | regulatory protein TERM 3773 3420156 - 3420142 - g 84 -4.2 -5.25803 | overlap 3420145 3420149 3420153 AATCTGGATAAAAAA GCACTA AGC CAGCGC CCAGTTCCCGTACGC TERM 3774 3420510 - 3420494 - g 71 -6.5 -4.15565 | CCGATGAGGTCAAAA GCCGCGA TTA TCACGAC AACATGATCTCCGTC TERM 3775 3421528 - 3421510 - g 91 -11 -4.36903 | TGGATCAAAGATAAA CCCAAACC CGT GGCTTGGG GGCAAGATCGCTATC YPN_3044 3419965 - 3421572 + | sulfatase YPN_3045 3421695 - 3423182 + | hypothetical protein gatY 3423291 - 3424145 + | tagatose-bisphosphate aldolase TERM 3776 3424343 - 3424314 - g 74 -9.9 -3.57792 | opp_overlap 3424323 GCACCTATTTTGAAA CGCCGATCAGCGC AGAT GCGCTGTTAAGCG ATCGTCTGGATCACC YPN_3047 3424169 - 3424747 + | ThiJ/PfpI-family thiamine biogenesis protein TERM 3777 3424873 - 3424899 + T 95 -13.1 -3.05844 | opp_overlap 3424879, overlap 3424875 3424879 ATAGCCAGTACCGTT GATGAACCGCA TGGTC TGCGGTTCGTC TCTTCGACTCCCCAA TERM 3778 3424875 - 3424897 + T 74 -9.9 -3.08813 | opp_overlap 3424879, overlap 3424873 3424879 AGCCAGTACCGTTGA TGAACCGCA TGGTC TGCGGTTCG TCTCTTCGACTCCCC YPN_3048 3426070 - 3424988 - | LacI-family regulatory protein TERM 3779 3426014 - 3426040 + g 75 -8.8 -3.8691 | overlap 3426013 CACTCTTGATACCGT GCTAATCGAAAG ACC CGTTTGATTAGC TATTTCTTGTATTTT TERM 3780 3426327 - 3426309 - H 82 -3.2 -5.56264 | opp_overlap 3426309 TTGAAATATAAAAAA CTCAAT ATTATCA ATTGAG TATATTTTATATCGC TERM 3781 3426911 - 3426893 - g 70 -2.3 -5.00616 | overlap 3426896 3426898 TGGTTCCCGAAAAAA GAACGGC CCATT GCCGCTG GATGGGCAGGGGTGG TERM 3782 3426908 - 3426896 - g 76 -6.2 -4.61482 | overlap 3426893 3426898 TTCCCGAAAAAAGAA CGGC CCATT GCCG CTGGATGGGCAGGGG YPN_3049 3426464 - 3427771 + | sugar transporter YPN_3050 3427922 - 3430297 + | glucosidase TERM 3783 3430343 - 3430318 - T 84 -9.7 -3.84017 | opp_overlap 3430327, overlap 3430320 TAATGTTAAATACAA GACGGACTTCC TGAT GGAAGCCCGTG AGGTTATTGACAAAG TERM 3784 3430341 - 3430320 - T 100 -12.3 -3.49634 | opp_overlap 3430327, overlap 3430318 ATGTTAAATACAAGA CGGACTTCC TGAT GGAAGCCCG TGAGGTTATTGACAA TERM 3785 3430419 - 3430445 + T 73 -10.1 -2.98487 | gap 1, overlap 3430415 3430414 3430412 3430420 ACATCCATGTAGGCT CGAGCCGCGCCA TCTT TGGCGCGGA-CG CTTTACTTCCTCTGC TERM 3786 3430420 - 3430446 + T 86 -10.1 -3.98282 | gap 1, overlap 3430415 3430414 3430412 3430419 CATCCATGTAGGCTC GAG-CCGCGCCA TCTT TGGCGCGGACGC TTTACTTCCTCTGCC TERM 3787 3430510 - 3430531 + T 100 -15.9 -4.96501 | overlap 3430493 TTGTCAGCAGTCTGA CGGGCTTCC TGAT GGAAGCCCG TTTATTTTTGTACGG lacI 3431683 - 3430610 - | lac repressor YPN_3052 3431955 - 3433214 + | maltoporin TERM 3788 3433393 - 3433418 + T 100 -16.3 -4.73108 | TCGGTTATTCTTCTA TGCTCACTACC CTTA GGTAGTGAGCA TTTTAGTTTTATACC YPN_3053 3433898 - 3433587 - | PTS transport protein TERM 3789 3433967 - 3433988 + r 73 -10.1 -2.9186 | opp_overlap 3433967 GTCGATGTAAAAAAA CGCCCACTC GGCT GAATGGGCG TGTATGGCATTCAGT TERM 3790 3433988 - 3433967 - R 100 -12.3 -5.47218 | opp_overlap 3433967 GTCGATGTAAAAAAA CGCCCACTC GGCT GAATGGGCG TGTATGGCATTCAGT YPN_3054 3436070 - 3434010 - | putative beta-galactosidase TERM 3791 3434191 - 3434157 - G 71 -7.8 -3.99324 | overlap 3434161 TTCTACCACGATAAA TTCACTCTCACCATCG GTA CGACGGTGAGCGGTAA CCCCATAAGGGAACT TERM 3792 3434187 - 3434161 - G 77 -13 -2.7242 | overlap 3434157 ACCACGATAAATTCA CTCTCACCATCG GTA CGACGGTGAGCG GTAACCCCATAAGGG TERM 3793 3434469 - 3434500 + g 74 -7.4 -4.15044 | gap 1, overlap 3434456 3434455 TGCAAGTCCTTGGAC TTGATTGCTCTCGCC ATC GGCCAGA-CAGTCAA TTTCTTCGGACCAGA TERM 3794 3434862 - 3434849 - G 76 -5.3 -4.8622 | TTTCCCAATCAAAAA TGATG GCAA CATCA GCGTCTACTTTACTT TERM 3795 3436099 - 3436119 + r 83 -11.9 -2.60571 | opp_overlap 3436095, overlap 3436098 ATAATAAATACTTGG TGTTGCCCA TAA TGGGCAACG ATTAATTAAAAACTT YPN_3055 3437323 - 3436121 - | galactosidase YPN_3056 3438179 - 3437328 - | maltodextrin permease protein YPN_3057 3439498 - 3438191 - | maltodextrin transport permease TERM 3796 3438597 - 3438587 - G 74 -4.6 -4.87389 | CATGGCAAAAACAAA CGGG AAA CCCA GCCACGTCTGCATCA YPN_3058 3440893 - 3439658 - | sugar-binding protein TERM 3797 3441219 - 3441199 - H 84 -3.9 -5.50313 | opp_overlap 3441200, overlap 3441201 CATAAAATCAAAAAA CGCACCTCA GGG TGATGTGTG ATGGCCCCCTGACTG YPN_3059 3441256 - 3442362 + | sugar transport ATP-binding protein TERM 3798 3442437 - 3442415 - f 73 -9.1 -3.46509 | overlap 3442409 GGTTAAGAATACCAA GCGGGTTTC CTGTT GAAGCCCGC TGAATATTAAGATAG YPN_3060 3442911 - 3444419 + | sugar transport ATP-binding protein YPN_3061 3444491 - 3445495 + | sugar transport system permease TERM 3799 3445968 - 3445940 - g 80 -2.3 -5.52384 | overlap 3445943 CTTTTATGAAAAAAA CAATGCTACAAAC TCT GCTTGCTGCAACG CTGATACTTTCCTTT TERM 3800 3445965 - 3445943 - g 74 -4.8 -4.8487 | overlap 3445940 TTATGAAAAAAACAA TGCTACAAAC TCT GCTTGCTGCA ACGCTGATACTTTCC YPN_3062 3445930 - 3446931 + | sugar-binding periplasmic protein TERM 3801 3446952 - 3446979 + F 100 -12.7 -3.57792 | opp_overlap 3446941 ATGATCGCTATCGCC CCCGGCAGCGG CAAAAT CTGCTGTCGGG TTTGAGGGTAAATCC YPN_3063 3447710 - 3448228 + | hypothetical protein YPN_3064 3448604 - 3449461 + | hypothetical protein TERM 3802 3449468 - 3449480 + F 74 -4.8 -4.82901 | opp_overlap 3449463 AGCCAATAACCGTTT GGTG CTGCT CACC TTTTTATCAGAAGGG TERM 3803 3449658 - 3449671 + F 77 -3.9 -5.21709 | overlap 3449649 CCCAGTTCAACATTT TGATT TAAA AATCA TTTTTTGATATCCCC TERM 3804 3449783 - 3449801 + F 75 -7.4 -4.27861 | opp_overlap 3449773 3449776, overlap 3449784 TAAAAGCACGCGGGA TGCGTTGC GCA GTAACGCG TTTTAGATATATCTT TERM 3805 3450476 - 3450452 - g 73 -9.4 -3.80733 | gap 1 CTCACGCCAGAACAA GTAGCG-CGTA TTAA TACGGCGCTAC TGGCTGCGGTAGACA YPN_3065 3449885 - 3450565 + | hypothetical protein YPN_3066 3450565 - 3450885 + | hypothetical protein YPN_3067 3451273 - 3450968 - | hypothetical protein YPN_3068 3452269 - 3451490 - | hypothetical protein YPN_3069 3453641 - 3452874 - | hypothetical protein TERM 3806 3453392 - 3453403 + gr 71 -5.8 -4.36914 | overlap 3453388 GTGTCAGCCTAGAGC TGGG TAGC CCCA TTTTCTGAAACCAGG YPN_3070 3455806 - 3453611 - | hypothetical protein TERM 3807 3454239 - 3454249 + gr 76 -3.2 -5.11836 | TGCTGTTGTAAAAGT GCTT TTT GAGC TTTTGTTTTGAGTAT TERM 3808 3455092 - 3455076 - GR 72 -7.9 -3.76835 | CGGAACAACATATAA GTCGCTG TTT CTGCGAC CCATGCTTGAGAACT YPN_3071 3457281 - 3457087 - | hypothetical protein TERM 3809 3457122 - 3457139 + g 73 -2.7 -4.93877 | gap 1, overlap 3457124 GCTTGTAGGCTTCTT TG-GCTTC GTT GAGGCTCA TTTTATTTGCTCCAC YPN_3072 3458816 - 3457278 - | hypothetical protein YPN_3073 3460465 - 3459323 - | hypothetical protein YPN_3074 3460734 - 3461099 + | hypothetical protein YPN_3075 3461112 - 3461348 + | hypothetical protein YPN_3076 3461354 - 3461686 + | hypothetical protein TERM 3810 3461767 - 3461780 + F 75 -3.1 -5.18866 | opp_overlap 3461767, overlap 3461771 TGACCTAAAACGACA GGAAT AAAG GTTCC TTTTATTTATTTGCC TERM 3811 3462003 - 3461952 - g 74 -6.6 -4.40993 | gap 1, opp_overlap 3461987 TATAAATTATTAAAA CAAAAGCGCT-TCCCGCCACC GATAAAAATAG GGGGGCGGGCTATCGCTTTTG TTGAAAGTGAGGTGA YPN_3077 3461868 - 3462068 + | regulatory protein YPN_3078 3462553 - 3462227 - | hypothetical protein TERM 3812 3462281 - 3462294 + g 79 -5.2 -5.00616 | GCCTTTCTCTTTCCA CGGC ATATAA GCCG TTTTTTGCACCACAA TERM 3813 3462645 - 3462607 - H 74 -6.6 -4.2828 | opp_overlap 3462611, overlap 3462611 3462631 GCGGATGTATCAAAA GGAACGCCCCGACATCAC TCA ATACTGCCGGGGCGTTTA TCCACCACGGAGCAA TERM 3814 3462641 - 3462611 - H 93 -11.8 -3.72073 | opp_overlap 3462611, overlap 3462607 3462631 ATGTATCAAAAGGAA CGCCCCGACATCAC TCA ATACTGCCGGGGCG TTTATCCACCACGGA TERM 3815 3463616 - 3463603 - g 72 -3.7 -4.82901 | overlap 3463604 TTGTCCGCAGAAAAA GCCGC CAAC GCGGT CAATGGTTGGGTGAC TERM 3816 3465045 - 3465034 - g 80 -2.2 -5.5208 | GCAGAATACAAAAAA GCCA GAAC TGAC AAAGGGTTCCGCTAC YPN_3079 3462853 - 3465144 + | primase TERM 3817 3465216 - 3465250 + T 93 -12.4 -3.04248 | opp_overlap 3465216 ATACAAAGATAAAAA CTGACTGAATAGTT TACTAAT AACTGTTCAGTCAG TATTCAGAGGTGTTC TERM 3818 3465250 - 3465216 - T 100 -10.2 -5.26155 | opp_overlap 3465216 ATACAAAGATAAAAA CTGACTGAATAGTT TACTAAT AACTGTTCAGTCAG TATTCAGAGGTGTTC TERM 3819 3465326 - 3465295 - T 71 -4.4 -4.7497 | GGCAGGTATTAAAAA CTGAACACCTGAAC AGTT GCTGAAGAGTTCAG CGGGGAGTATTCAGA YPN_3080 3465942 - 3465544 - | hypothetical protein YPN_3081 3466238 - 3465942 - | hypothetical protein TERM 3820 3466277 - 3466291 + r 70 -7.2 -3.87075 | opp_overlap 3466275 3466277, overlap 3466280 TCCACTTAATAAATA TAACCT AGT AGGTTA TTTATAGCAAGTCAT YPN_3082 3466764 - 3466402 - | DNA binding protein YPN_3083 3467114 - 3466827 - | hypothetical protein TERM 3821 3467350 - 3467377 + H 80 -10.5 -3.54424 | GGTCAGATATAGTGC CCCCGCAGCGG CAAAAT CCGTTGCTGGG TTTAGCAGCCTGAGA YPN_3084 3467459 - 3467584 + | hypothetical protein YPN_3085 3467685 - 3467870 + | hypothetical protein TERM 3822 3467902 - 3467887 - T 100 -9 -5.19879 | opp_overlap 3467887 CTCTAAATACAAAAA GGCATC GTGA GATGCC TTTAAAAAGTTTGGA TERM 3823 3467887 - 3467902 + T 75 -9 -3.5936 | opp_overlap 3467887 CTCTAAATACAAAAA GGCATC GTGA GATGCC TTTAAAAAGTTTGGA YPN_3086 3469166 - 3467952 - | integrase TERM 3824 3469570 - 3469555 - R 100 -11.8 -4.7497 | CTGACTCAGTAAAAA GGGCGC CGTA GCGCCC TGAGGAATTTATCGT lysS 3471116 - 3469599 - | lysyl-tRNA synthetase prfB 3472058 - 3471126 - | peptide chain release factor 2 TERM 3825 3472088 - 3472110 + r 100 -13.4 -4.0802 | CGGGTTCATTCCAGA CGTCGGGCTG TTC CAGCTCGGCG TTTACTTCTTCCAGT YPN_3089 3474136 - 3472403 - | ssDNA exonuclease RecJ TERM 3826 3473881 - 3473856 - G 79 -11.1 -3.56643 | overlap 3473857 CCCATACTGCGCAAA GCCAGCACCGC CAAC GCGGTACTGGT CGCGCCGTCAGCATC TERM 3827 3473880 - 3473857 - G 82 -14.6 -2.73771 | overlap 3473856 CCATACTGCGCAAAG CCAGCACCGC CAAC GCGGTACTGG TCGCGCCGTCAGCAT YPN_3090 3474859 - 3474143 - | thiol:disulfide interchange protein DsbC xerD 3475789 - 3474890 - | site-specific tyrosine recombinase XerD YPN_3092 3475833 - 3476414 + | flavodoxin FldB TERM 3828 3476445 - 3476483 + T 77 -11.2 -2.8655 | opp_overlap 3476455, overlap 3476450 3476451 CCTGTTACATCAGAG CTCAATTTAACGGGCA CCCGATA TGCCCGTTAAGTTTAG TCTAGTCTAGCTGCG TERM 3829 3476450 - 3476478 + T 84 -9.7 -3.8766 | opp_overlap 3476455, overlap 3476445 3476451 TACATCAGAGCTCAA TTTAACGGGCA CCCGATA TGCCCGTTAAG TTTAGTCTAGTCTAG TERM 3830 3476451 - 3476477 + T 79 -11 -2.92114 | opp_overlap 3476455, overlap 3476450 3476445 ACATCAGAGCTCAAT TTAACGGGCA CCCGATA TGCCCGTTAA GTTTAGTCTAGTCTA YPN_3093 3477982 - 3476504 - | hypothetical protein TERM 3831 3477515 - 3477496 - G 70 -9.2 -3.55444 | CGCTGAGTGGCGAAA TGCGCTGG ATAC CCCGCGCA TCACTCAGTGCCAGC YPN_3094 3479500 - 3478082 - | sensory histidine kinase CreC YPN_3095 3480223 - 3479525 - | DNA-binding response regulator CreB YPN_3096 3480648 - 3480223 - | hypothetical protein YPN_3097 3480895 - 3480629 - | hypothetical protein TERM 3832 3481014 - 3480995 - H 78 -10 -3.54382 | overlap 3480978 CGTTAATATAACTAA CGGGAATG TTAC CACTCCCG GGATAGGGGGTTAAG TERM 3833 3481038 - 3481052 + H 80 -2.8 -5.52384 | opp_overlap 3481038 3481040, overlap 3481040 GGTTAAGGTACTAAA TACACT GCA AGTGCA TTTTTTTAATCGCCC TERM 3834 3481605 - 3481594 - g 74 -7.2 -4.14739 | GTAGCCAGGCCAAAA CCGC GCTG GCGG AAATCTTTACTGAAT YPN_3098 3481212 - 3482204 + | putative global regulator TERM 3835 3482219 - 3482209 - T 73 -5.4 -4.66814 | AAGATAAATAATAAA GAGT TCT ACTC TACAGAGACCGGTTA TERM 3836 3482220 - 3482247 + T 100 -18.6 -5.23292 | opp_overlap 3482226 3482228 TAAAGAGTTCTACTC TACAGAGACCGG TTAA CCGGTCTCTGTA TTTTGTTTTATATCA TERM 3837 3482241 - 3482226 - T 75 -10.4 -2.89564 | opp_overlap 3482220, overlap 3482228 GTTCTACTCTACAGA GACCGG TTAA CCGGTC TCTGTATTTTGTTTT YPN_3099 3482774 - 3482277 - | hypothetical protein YPN_3100 3483733 - 3483032 - | hemolysin III YPN_3101 3485038 - 3483935 - | hypothetical protein YPN_3102 3487082 - 3485142 - | surface protein TERM 3838 3487437 - 3487424 - R 70 -5.3 -4.47183 | overlap 3487430 TATTATCTAAACAAA CCATA ACAT TATGG AATGTCGGCTAGTTG YPN_3103 3488765 - 3488328 - | hypothetical protein TERM 3839 3489026 - 3489000 - R 72 -7.2 -3.9749 | gap 1, opp_overlap 3489009, overlap 3489001 3489017 AGGCAGAAGAGTAAA GCGTCCGCGCC AGAGAA GGCGCGG-CTC GAGCCTACATGGATG TERM 3840 3489101 - 3489126 + r 82 -8.2 -4.26903 | opp_overlap 3489100 3489101, overlap 3489105 CACTTTGTCAATAAC CTCAGGGCCG CTTTCA CGGCCCTTGG TTTTGCTCAGATGAG TERM 3841 3489105 - 3489122 + r 80 -9.8 -3.71672 | opp_overlap 3489100 3489101, overlap 3489101 TTGTCAATAACCTCA GGGCCG CTTTCA CGGCCC TTGGTTTTGCTCAGA YPN_3104 3492022 - 3489143 - | glycine dehydrogenase TERM 3842 3492203 - 3492228 + r 71 -9 -3.23979 | overlap 3492197 TTTAACCTACTCGGC GTCAGGGCCA ATAAAA TGGCCCTCAC TTGAGTTACTCTTCA YPN_3105 3492620 - 3492234 - | glycine cleavage system protein H gcvT 3493786 - 3492689 - | glycine cleavage system aminomethyltransferase T TERM 3843 3493943 - 3493933 - R 75 -8.2 -3.76167 | opp_overlap 3493932, overlap 3493931 CCATAAGCTAAAATA GGCG AGG CGCC CTCTTCAGGCGACAA YPN_3107 3495727 - 3494507 - | hypothetical protein YPN_3108 3497078 - 3495900 - | 2-octaprenyl-6-methoxyphenyl hydroxylase YPN_3109 3498460 - 3497147 - | proline aminopeptidase P II TERM 3844 3497616 - 3497602 - G 75 -9.2 -3.91032 | opp_overlap 3497598 3497603, overlap 3497603 GAACGATGTCATAAA CCGCCC GCT GAGCGG GGGTAAATTTGCCAT YPN_3110 3499126 - 3498548 - | hypothetical protein YPN_3111 3499463 - 3499792 + | Z-ring-associated protein TERM 3845 3500308 - 3500320 + G 79 -9.1 -4.17516 | AATCCAGCAAGCTCA CACGG TAG CCGTG TTTCTCTCCTTTGAC YPN_3112 3500156 - 3500752 + | 5-formyltetrahydrofolate cyclo-ligase-family protein TERM 3846 3500805 - 3500779 - T 100 -22.4 -6.02914 | TCGAGATAAAAAAAA CACCGGGGATCC TAT GGATCCCCGGTG TCAGACTGCTGACAA TERM 3847 3500894 - 3500868 - T 72 -7.2 -3.9749 | gap 1, opp_overlap 3500877, overlap 3500869 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG TERM 3848 3500973 - 3500999 + T 88 -10.8 -3.8901 | opp_overlap 3500969 3500968 TTGTCAATAACCTCA CACCTGAGATCC TAT GGATCCCAGGCG TTTAATCATTTCAGG YPN_3113 3502258 - 3501017 - | D-3-phosphoglycerate dehydrogenase TERM 3849 3501063 - 3501073 + g 79 -6.8 -4.63542 | GGAATGGCCTTCATC GCCT GCA AGGC TTTTTCCGCATTATC TERM 3850 3501940 - 3501906 - G 73 -12.2 -2.57974 | opp_overlap 3501913, overlap 3501902 ATCAGCAGCAACTCA CCCAATACCATTTCGG CTA CCGAACGGGTATTGGA GAAAGGCGCATTGAA TERM 3851 3502561 - 3502525 - R 71 -2.2 -5.22039 | overlap 3502516 TTCAAAGGCAAAAAA TTATCAGGGTGAAGCC AAATA AACGACACCCTGAAAA ATTTTAGCCAATCAC YPN_3114 3503221 - 3502565 - | ribose-5-phosphate isomerase A YPN_3115 3503563 - 3504471 + | chromosome replication initiation inhibitor protein TERM 3852 3504466 - 3504498 + T 71 -4.9 -4.64676 | GACTCGTTTATTGGG CAGTAGCTGTTTA TGTTTAC TGAGCAGCAACTG TTTTATTGGCAGTAG YPN_3116 3505282 - 3504482 - | hypothetical protein TERM 3853 3505046 - 3505061 + g 79 -6.8 -4.64766 | AAAGTATTGCGCGAC GCGGGT ATCG ACCTGC TTTTTGGCATCTGCA YPN_3117 3506068 - 3505451 - | arginine exporter protein TERM 3854 3505620 - 3505600 - G 76 -7.5 -4.30001 | overlap 3505597 CAAAAAACCAAACAA TAGAGGCCG TAA CCGCCCCTA AAGCAAACCAAGGGC TERM 3855 3506295 - 3506280 - R 85 -7.5 -4.7497 | opp_overlap 3506280 CCGAGCGAGTAAAAA CGGGC ACTGAG GCCCG TTTAATCTATTTACC TERM 3856 3506280 - 3506295 + r 72 -7.5 -3.97308 | opp_overlap 3506280 CCGAGCGAGTAAAAA CGGGC ACTGAG GCCCG TTTAATCTATTTACC YPN_3118 3507200 - 3506331 - | membrane protein TERM 3857 3507235 - 3507221 - R 100 -7.8 -5.26316 | CCATCCTACAAAAAA GCTCCC TAC AGGAGC AATTACGCCAAAAAA TERM 3858 3507272 - 3507253 - R 93 -4.2 -5.78622 | overlap 3507264 TTACGCCAAAAAAAA TCACCATC TAAC GCTGGCGA CTCTAGCCAACGGCC TERM 3859 3507425 - 3507412 - R 100 -9.5 -5.30155 | opp_overlap 3507412 TCAGCAACGAAAAAA GGCCC CGTA GGGCC TTTCAGACTGCTGAC TERM 3860 3507412 - 3507425 + r 78 -9.5 -3.58343 | opp_overlap 3507412 TCAGCAACGAAAAAA GGCCC CGTA GGGCC TTTCAGACTGCTGAC TERM 3861 3507516 - 3507490 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 3507499, overlap 3507491 3507506 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3862 3507517 - 3507491 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 3507499, overlap 3507490 3507506 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3863 3507617 - 3507590 - R 100 -14.2 -3.62046 | opp_overlap 3507597, overlap 3507597 GCACTTTGTCAATAA CCTCAAAGGCCC CGTA GGGCCTTTTAGG TCAGTCCGAACAGAC TERM 3864 3507610 - 3507597 - R 78 -9.5 -3.72051 | opp_overlap 3507597, overlap 3507590 GTCAATAACCTCAAA GGCCC CGTA GGGCC TTTTAGGTCAGTCCG TERM 3865 3507597 - 3507610 + r 85 -9.5 -4.19817 | opp_overlap 3507597 3507590 GTCAATAACCTCAAA GGCCC CGTA GGGCC TTTTAGGTCAGTCCG YPN_3119 3508717 - 3507638 - | fructose-bisphosphate aldolase pgk 3510000 - 3508837 - | phosphoglycerate kinase TERM 3866 3509078 - 3509093 + g 76 -7.6 -4.31329 | opp_overlap 3509074 AACACACCAACCGGA CCATTC CACA GAATGG TTTTGGCATTTTTCA TERM 3867 3509454 - 3509472 + g 100 -16 -3.56568 | opp_overlap 3509441 3509448 3509446 TAGCAACCATTGGAC GCGCTGGG TTA CCCAGCGC TTTACCCAATGCTTC YPN_3121 3511119 - 3510103 - | erythrose 4-phosphate dehydrogenase TERM 3868 3511202 - 3511223 + r 73 -5.8 -4.42653 | opp_overlap 3511203, overlap 3511203 3511204 ATCGTATTATCACAA TTCGGCCA TAATAC TGGCCGGG TTTTCTCGGTGGGAT TERM 3869 3511317 - 3511307 - R 70 -5.4 -4.49344 | overlap 3511313 3511314 AAAGTCATGATAAAA GGAA TAT TTCC CTGAAAAAGGGCACA TERM 3870 3511382 - 3511358 - R 88 -9.9 -4.23045 | opp_overlap 3511361, overlap 3511360 3511361 GAATTAGTCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3871 3511380 - 3511360 - R 100 -12.5 -3.70709 | opp_overlap 3511361, overlap 3511358 3511361 ATTAGTCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3872 3511361 - 3511379 + r 100 -16 -4.8048 | opp_overlap 3511360 3511358 3511361 TTAGTCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3873 3511379 - 3511361 - R 100 -16 -2.81702 | opp_overlap 3511361, overlap 3511360 3511358 TTAGTCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_3122 3511918 - 3511460 - | transposase for the IS1541 insertion element TERM 3874 3512031 - 3512049 + r 100 -16 -4.36914 | opp_overlap 3512031 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3875 3512049 - 3512031 - R 100 -16 -3.07307 | opp_overlap 3512031 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3876 3512085 - 3512070 - R 100 -10.4 -5.93809 | opp_overlap 3512070 TGGGCACAAAAAAAA GACCGC AAAA GCGGTC TTTTAACAGGTGCAT TERM 3877 3512070 - 3512085 + r 91 -10.4 -4.09864 | opp_overlap 3512070 TGGGCACAAAAAAAA GACCGC AAAA GCGGTC TTTTAACAGGTGCAT TERM 3878 3512148 - 3512175 + r 75 -5.6 -4.58663 | TGCAGTATTGATAAC GTCGTTGCCTGT TTTA ACAGTTAATGAC TTTTTAACGGCTAAT YPN_3123 3514220 - 3512226 - | transketolase TERM 3879 3514394 - 3514384 - H 71 -4.6 -4.63218 | TTGGGGTGAACAAAA GCAG CCA CCGC ACAACGACAAACCAT TERM 3880 3515331 - 3515317 - g 86 -7 -5.0133 | GATTTGCTGAAAAAA CGGGGC ATT GACCCG AACGGTCTGGTAACC YPN_3124 3514711 - 3515463 + | lipoprotein TERM 3881 3515516 - 3515488 - T 72 -9.6 -3.14564 | gap 1, overlap 3515492 CCAGTCTCTTATCAA TGCAGACGCCCCA CTGT TGGGGCGTCAG-A CTGCTGACAAACCCC TERM 3882 3515513 - 3515492 - T 100 -15.9 -2.56596 | overlap 3515488 TCTCTTATCAATGCA GACGCCCCA CTGT TGGGGCGTC AGACTGCTGACAAAC TERM 3883 3515600 - 3515574 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3515583, overlap 3515575 3515590 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3884 3515601 - 3515575 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3515583, overlap 3515574 3515590 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3885 3515701 - 3515674 - T 80 -9.8 -3.62046 | opp_overlap 3515675 3515695, overlap 3515675 GCACTTTGTCAATAA CCTCACTCCCCA CTGT TGGGGCGTGAGT TCTGTAGCTGACGTT TERM 3886 3515675 - 3515700 + T 100 -13.3 -3.52102 | opp_overlap 3515675 3515674, overlap 3515695 CACTTTGTCAATAAC CTCACTCCCCA CTGT TGGGGCGTGAG TTCTGTAGCTGACGT TERM 3887 3515700 - 3515675 - T 93 -13.3 -2.77013 | opp_overlap 3515675 3515695, overlap 3515674 CACTTTGTCAATAAC CTCACTCCCCA CTGT TGGGGCGTGAG TTCTGTAGCTGACGT YPN_3125 3516073 - 3515753 - | Rieske protein TERM 3888 3516202 - 3516183 - R 100 -8.6 -5.40072 | opp_overlap 3516183 TCGCGCCGAAAAAAA GGACAAAC CTGA GTTTGCCC TTTAATCGATACTGA YPN_3126 3518212 - 3516233 - | arginine decarboxylase YPN_3127 3519419 - 3520573 + | S-adenosylmethionine synthetase TERM 3889 3520619 - 3520649 + F 100 -13.3 -4.62441 | opp_overlap 3520619 TAAAACGATGAAGAA CCACCCTGTAAGC AACAC GCTGGCAGGGTGG TTTATTTGTATGCAC TERM 3890 3520649 - 3520619 - f 100 -11.8 -3.81516 | opp_overlap 3520619 TAAAACGATGAAGAA CCACCCTGTAAGCA ACA CGCTGGCAGGGTGG TTTATTTGTATGCAC YPN_3128 3520721 - 3521278 + | hypothetical protein TERM 3891 3521613 - 3521594 - g 84 -4.2 -5.31456 | gap 1, opp_overlap 3521595, overlap 3521595 3521598 TCAACCCAGAAAAAA TGCAGCGCG AGC CGCGCGG-A TTGAATGGGAACATG TERM 3892 3521610 - 3521598 - g 70 -10.5 -2.96157 | opp_overlap 3521595, overlap 3521595 3521594 CCCAGAAAAAATGCA GCGCG AGC CGCGC GGATTGAATGGGAAC YPN_3129 3521376 - 3522083 + | endonuclease I YPN_3130 3522062 - 3522235 + | hypothetical protein TERM 3893 3522541 - 3522523 - g 74 -3.8 -4.9725 | opp_overlap 3522513 ACGGGCAGATAAAAA GAATCTGA TTG TCCGACTC GCTGAAGGGCAATGG YPN_3131 3522344 - 3523075 + | hypothetical protein YPN_3132 3523101 - 3524060 + | glutathione synthetase YPN_3133 3524176 - 3524739 + | hypothetical protein YPN_3134 3524739 - 3525161 + | Holliday junction resolvase-like protein TERM 3894 3525299 - 3525313 + F 95 -5.7 -5.59564 | GTTTAAAATATTGCA CACCT CTTGC AGGTG TTTTTTTACATTTAT YPN_3135 3525341 - 3526225 + | carbon-nitrogen hydrolase YPN_3136 3526229 - 3527344 + | agmatine deiminase TERM 3895 3527369 - 3527396 + T 100 -15 -4.20783 | AAATAAGCCGCCTGC TTGACCCGGATC ATCC GATCCGGGTTAA TTTATTGCATCACCT YPN_3137 3528577 - 3527453 - | hypothetical protein TERM 3896 3529034 - 3528998 - g 78 -13.1 -2.87527 | opp_overlap 3529001, overlap 3529002 CAGTGATGAGCAAAG CAAAGCGGGGATTTC CTTGAGT GAACTCCCCGCCTTG GCTGACAGCATTAGT TERM 3897 3529030 - 3529002 - g 84 -10.3 -4.11623 | opp_overlap 3529001, overlap 3528998 GATGAGCAAAGCAAA GCGGGGATTTC CTTGAGT GAACTCCCCGC CTTGGCTGACAGCAT YPN_3138 3528597 - 3529295 + | hypothetical protein YPN_3139 3529428 - 3530249 + | pyrroline-5-carboxylate reductase TERM 3898 3530733 - 3530743 + G 70 -3.2 -4.77036 | TCGATAGCGCATCAT TGCT GTT GGCA TTTTTACTGATGACC YPN_3140 3530537 - 3531091 + | membrane protein YPN_3141 3531088 - 3531378 + | hypothetical protein YPN_3142 3531478 - 3532071 + | putative deoxyribonucleotide triphosphate pyrophosphatase TERM 3899 3532373 - 3532390 + G 70 -9.1 -3.56643 | opp_overlap 3532366, overlap 3532382 GAAGCCAACCCCGGA GCGGTCG AAGC CGATCGC TTTAGCGGCTATCAG YPN_3143 3532052 - 3533194 + | coproporphyrinogen III oxidase TERM 3900 3533330 - 3533357 + T 74 -9.8 -3.14961 | overlap 3533328 3533326 CAGTATGACTGGTGT CTCTGAGGGCAG AAAC CTGCCCTCAGCC TCTCTTCCTGCTAAT YPN_3144 3542716 - 3533384 - | virulence determinant TERM 3901 3539297 - 3539316 + g 70 -10 -3.28447 | opp_overlap 3539297 3539296, overlap 3539296 3539298 TTCATTATGACTAAT TTCACGCC ACTC GGCGTGAG TATTATCGTCAATGA TERM 3902 3539298 - 3539315 + g 70 -11.3 -2.56747 | opp_overlap 3539297 3539296, overlap 3539297 3539296 TCATTATGACTAATT TCACGCC ACTC GGCGTGA GTATTATCGTCAATG TERM 3903 3540347 - 3540367 + g 76 -12.7 -2.57243 | overlap 3540346 3540344 3540349 AGCAATAATCTCTCC GACTCTCTT AGA AAGAGAGTC ATCTTGTAATAATAC TERM 3904 3540399 - 3540410 + g 70 -3 -4.86731 | ATAAATTGTAGGTGG TGAT TTTT ATCA TTTTGTTTAAAGGAA TERM 3905 3543185 - 3543208 + r 82 -6.6 -4.75472 | opp_overlap 3543183 3543182, overlap 3543184 3543185 GGCGATTCTAAATTT GGAGGGGG AATATCCC CCCCCCCC TTTTATTACTCTAAG YPN_3145 3543459 - 3543214 - | hypothetical protein YPN_3146 3543947 - 3543417 - | hypothetical protein YPN_3147 3544985 - 3544059 - | glutaminase TERM 3906 3545064 - 3545047 - R 100 -9.8 -4.91852 | opp_overlap 3545046 3545044 3545047 GCCAGTAAAAACAAA GGCGCC GGTTAG GGCGCC CTGTTTAATGATCAG TERM 3907 3545047 - 3545064 + r 71 -9.8 -2.68493 | opp_overlap 3545047, overlap 3545046 3545044 GCCAGTAAAAACAAA GGCGCC GGTTAG GGCGCC CTGTTTAATGATCAG YPN_3148 3545422 - 3545096 - | hypothetical protein trmB 3546141 - 3545422 - | tRNA (guanine-N(7))-methyltransferase YPN_3150 3546476 - 3547594 + | adenine DNA glycosylase YPN_3151 3547772 - 3548044 + | hypothetical protein TERM 3908 3548048 - 3548072 + F 83 -9.3 -4.015 | gap 1, opp_overlap 3548045 3548041 3548050, overlap 3548050 CCGAGTAAGTAACCA CA-CGGGGCC AATTAA GGCCCCGCTG TTATTTCCTAAATAG TERM 3909 3548069 - 3548050 - f 86 -12.1 -2.97613 | opp_overlap 3548048 3548050, overlap 3548045 3548041 GAGTAAGTAACCACA CGGGGCC AATTAA GGCCCCG CTGTTATTTCCTAAA TERM 3910 3548050 - 3548069 + F 83 -12.1 -2.75069 | opp_overlap 3548050 3548045 3548041, overlap 3548048 GAGTAAGTAACCACA CGGGGCC AATTAA GGCCCCG CTGTTATTTCCTAAA TERM 3911 3548735 - 3548711 - g 100 -9.4 -5.18371 | gap 1, opp_overlap 3548711 TGCTACAAAACAAAA TGCAAACACGG ACTT CCG-GTTTGCA TGTGATCTCGTTCGT mltC 3548227 - 3549303 + | murein transglycosylase C YPN_3153 3549603 - 3550703 + | hypothetical protein TERM 3912 3551550 - 3551515 - g 79 -11.1 -3.57792 | opp_overlap 3551517 CCACGCACTGGCAAA CCCGTCGACACGCCG CGTGAT CGCCGTTTCGACGAG AGCTATAACGCCACC YPN_3154 3550696 - 3552840 + | hydroxamate-type ferrisiderophore receptor YPN_3155 3553906 - 3552923 - | sugar transport system permease protein TERM 3913 3553824 - 3553813 - G 84 -4.4 -5.35721 | ACATAACAATAAAAA CAAC GGTC GTTG AGTTGTCTAGCAGGA YPN_3156 3555438 - 3553939 - | sugar transport ATP-binding protein YPN_3157 3556443 - 3555484 - | sugar ABC transporter periplasmic binding protein TERM 3914 3556974 - 3556945 - R 83 -11.5 -3.05521 | ATGAGATGTTTAATA CCGAGGCCATC AATTAAAA AATGGCCTCGG CTGATGGAGCGGAGA YPN_3158 3559326 - 3556999 - | ornithine decarboxylase TERM 3915 3558737 - 3558727 - GR 74 -2.4 -5.1925 | GTAGAATTCAAAAAA CTGG CGT CCTG CAGGATGCTTGCGAA TERM 3916 3558786 - 3558757 - GR 76 -4.3 -5.00884 | gap 1 ATGCTTGCGAAAAAA TTCGCCC-CCCTGA TGG CCAGGGCAAGCAAA GGTCGAGTTATTCAT YPN_3159 3559333 - 3559181 - | hypothetical protein TERM 3917 3559872 - 3559856 - R 76 -10.9 -2.62616 | opp_overlap 3559855 3559854 3559851 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 3918 3560027 - 3560053 + r 81 -7.2 -4.71776 | opp_overlap 3560027 TACGGGACGAAGAAA CCGGAGGATGTC GAT GACAAACTTCGG TTTTCTTGCGTCTTA YPN_3160 3560406 - 3560158 - | integrase YPN_3161 3561125 - 3560490 - | hypothetical protein TERM 3919 3561480 - 3561506 + r 71 -3.2 -5.01042 | opp_overlap 3561480 TCCTTATACAAAAAA TTATTATATAAA TAG TTTGTGTAATGA TTTTTCCTTTAAATT TERM 3920 3561490 - 3561480 - R 76 -2.6 -5.36441 | opp_overlap 3561480 TCCTTATACAAAAAA TTAT TAT ATAA ATAGTTTGTGTAATG YPN_3162 3562101 - 3561733 - | insertion sequence protein YPN_3163 3562430 - 3562155 - | insertion sequence protein YPN_3164 3563293 - 3562526 - | hypothetical protein TERM 3921 3563151 - 3563162 + g 74 -4.4 -4.84033 | TGGTTTTTTTTTACA TGCA AAAT TGCA TTTTCATTTTTGTCT TERM 3922 3563268 - 3563249 - G 73 -3 -5.00616 | GTGGGGTGTAAAAAA TAAAATAT AAAA ATATTTCA ATGTCAATTTTTTAA YPN_3165 3565577 - 3563280 - | kinase TERM 3923 3563406 - 3563419 + g 72 -3.9 -4.75288 | ATCGGCACTTTCTGC TTGAT CTTT ATCAA TTTCTTTTACTGTAC TERM 3924 3564800 - 3564810 + g 74 -6.8 -4.31329 | TGTATTCGTAATCTG CACC ATC GGTG TTTTCCAGTTTTTCA YPN_3166 3566228 - 3565593 - | hypothetical protein TERM 3925 3566593 - 3566583 - R 76 -2.6 -5.36441 | opp_overlap 3566583 TCCTTATACAAAAAA TTAT TAT ATAA ATAGTTTGTGTAATG TERM 3926 3566583 - 3566609 + r 71 -3.2 -5.01042 | opp_overlap 3566583 TCCTTATACAAAAAA TTATTATATAAA TAG TTTGTGTAATGA TTTTTCCTTTAAATT YPN_3167 3567424 - 3567149 - | insertion sequence protein TERM 3927 3568172 - 3568187 + r 74 -7.6 -3.93583 | CTCACTTTCCTCACT TTCCTC ACTT GAGGAA TTTCTGCATAGCTTA TERM 3928 3568290 - 3568310 + r 73 -9.7 -3.03348 | opp_overlap 3568292, overlap 3568289 3568293 CAGGAATATTTATAG CAGCCTCTC CCA GAGGGGTTG ATTTATGCTCTTCCC TERM 3929 3568293 - 3568307 + r 70 -7.8 -3.64902 | opp_overlap 3568292, overlap 3568290 3568289 GAATATTTATAGCAG CCTCTC CCA GAGGGG TTGATTTATGCTCTT YPN_3168 3570534 - 3568381 - | hypothetical protein TERM 3930 3570543 - 3570563 + r 100 -15.5 -3.18511 | opp_overlap 3570547 GCATCATCGCGTCAA CCCAGTCAG CAT CTGACTGGG TTGCATCTCTATCTC YPN_3169 3572966 - 3570618 - | hypothetical protein TERM 3931 3571794 - 3571813 + g 70 -2.8 -4.8143 | gap 1, overlap 3571794 3571795 3571810 GGTGCTGGTGACCCG T-GCGGGCA AGG TGCCGGCCA TTTTTGGCTTGTTGA YPN_3170 3575611 - 3572963 - | Clp ATPase TERM 3932 3575945 - 3575926 - R 100 -11.4 -5.69068 | opp_overlap 3575929 TAAAAACACAAAAAA GCAGGCGG CGAA CCGCCTAC TTGCGGGGTTACCCT YPN_3171 3576520 - 3576029 - | hypothetical protein YPN_3172 3578261 - 3576600 - | PAL/OmpA-family membrane protein TERM 3933 3577174 - 3577144 - G 77 -10.4 -3.61398 | GCTTTCGGGGAATAA TCCGTCATCGCCAC GCT GTGGTACTGACGGA TATCAAAGGCCACCC YPN_3173 3578947 - 3578261 - | membrane protein TERM 3934 3578657 - 3578640 - G 74 -2.6 -5.09225 | overlap 3578641 3578642 AGGGTATTGAAAAAA TGCGCC TGTAAG GGCGAA TGGCACCACACGAAG YPN_3174 3580296 - 3578944 - | hypothetical protein YPN_3175 3581846 - 3580308 - | hypothetical protein TERM 3935 3581807 - 3581829 + g 71 -6.3 -4.34402 | gap 1, overlap 3581808 TATTCTTTAATACGG TCGT-CGCAG TACC CTGCGCACGG TTTTCCTGTACAGAC YPN_3176 3582395 - 3581895 - | hypothetical protein YPN_3177 3584166 - 3583795 - | hypothetical protein TERM 3936 3584023 - 3584012 - G 91 -3 -5.84011 | AATAAAAAATAAAAA GATA TAAA TATC ATCCCAACGCTTCTG TERM 3937 3584132 - 3584142 + g 70 -2.6 -4.96773 | ATAAAAATAATTAGT TTTA ACA TAAA TTTATTTTTGATTCC YPN_3178 3584603 - 3584340 - | insertion element protein YPN_3179 3585000 - 3584671 - | putative lipoprotein YPN_3180 3585374 - 3585279 - | hypothetical protein YPN_3181 3586167 - 3585517 - | membrane protein TERM 3938 3587430 - 3587414 - g 70 -2.2 -4.95957 | opp_overlap 3587414 TAAATTAAGGAAAAA GACGTT TAAGG ATCGTC TTAACTGGGAGGTGA YPN_3182 3587337 - 3587987 + | N-acylhomoserine lactone synthase YspI YPN_3183 3588711 - 3587968 - | quorum-sensing transcriptional regulator TERM 3939 3588737 - 3588757 + H 74 -9.8 -3.15544 | opp_overlap 3588737 3588746 3588751 CATTTACTGTACTAA GGTGCAAT AGGAA ATTGCACC TTAGTACAACTACCG TERM 3940 3588757 - 3588737 - H 74 -9.8 -3.16881 | opp_overlap 3588737, overlap 3588746 3588751 CATTTACTGTACTAA GGTGCAAT AGGAA ATTGCACC TTAGTACAACTACCG TERM 3941 3588943 - 3588887 - H 70 -3.9 -4.78157 | gap 1, opp_overlap 3588893, overlap 3588893 ACCAAAAATAATAAA GGAAAATGCTACAGAAGTGC-ACCTG TTTCTG CAAGTAGAACTTCTGTAGCATTTAAT ATAATGTCTAGCTCC TERM 3942 3588893 - 3588937 + H 86 -10.2 -3.88062 | gap 1, opp_overlap 3588887 3588893 AATAATAAAGGAAAA TGCTACAGAAGTGC-ACCTGT TTCT GCAAGTAGAACTTCTGTAGCA TTTAATATAATGTCT TERM 3943 3588937 - 3588893 - H 100 -11.7 -4.71708 | gap 1, opp_overlap 3588893, overlap 3588887 AATAATAAAGGAAAA TGCTACAGAAGTGC-ACCTG TTTCTG CAAGTAGAACTTCTGTAGCA TTTAATATAATGTCT TERM 3944 3589556 - 3589538 - g 73 -11 -2.88579 | opp_overlap 3589538 3589536 3589533 3589540, overlap 3589540 CTAATCCGGCAGATA TAGCGCCC TCA GGACGCTA TATGATTATAGCGCT YPN_3184 3589273 - 3590649 + | hypothetical protein TERM 3945 3590823 - 3590862 + F 100 -15.4 -5.93809 | opp_overlap 3590830 3590856 ATTGTCCCTTCCCTA TGATAAATTTCATGCTAA TAAT TAAGCATGAAATTTATCA TTTTTTTTATAAAAA TERM 3946 3590855 - 3590830 - f 74 -7.7 -3.96148 | opp_overlap 3590823 CTTCCCTATGATAAA TTTCATGCTAA TAAT TAAGCATGAAA TTTATCATTTTTTTT YPN_3185 3591026 - 3591859 + | hypothetical protein YPN_3186 3593372 - 3592149 - | hypothetical protein TERM 3947 3592600 - 3592583 - G 71 -6.3 -4.42238 | gap 1, overlap 3592584 3592585 CTATGCTAAGCAAAA TG-GCCAC GTG GTGGCTCA CCGTGGTGGCCGAAT YPN_3187 3593512 - 3594120 + | hypothetical protein TERM 3948 3594448 - 3594426 - g 71 -11.3 -2.78032 | opp_overlap 3594425 3594424, overlap 3594425 3594423 CTGTCGGTAAAAGAG GCCAAACGC GGTAT GCGCTTGGC ACGTTTGGCTCAAAC YPN_3188 3594213 - 3595283 + | siderophore biosynthesis protein, IucA familly YPN_3189 3595267 - 3596217 + | siderophore biosynthesis protein IucB YPN_3190 3596214 - 3597962 + | siderophore biosynthesis protein IucC TERM 3949 3598836 - 3598814 - g 70 -3.3 -4.8048 | gap 1, overlap 3598816 GTGTTACATGAAAAA CCGTGGGCGC GCCT GCTCCC-CAG CCGCTCACTGACCAA YPN_3191 3597959 - 3599287 + | siderophore biosynthesis protein IucD YPN_3192 3599359 - 3601539 + | ferric siderophore receptor TERM 3950 3601652 - 3601607 - T 80 -10 -3.73914 | opp_overlap 3601607 3601611, overlap 3601611 ATCACCCATCAATAA TTA-AGGGGCTTTGCGCAAAAT TAAG ACATTGCGCAA-GCCCCTATAA TTTGTTTATGGCAAT TERM 3951 3601607 - 3601652 + T 82 -7.9 -4.55697 | opp_overlap 3601607 3601611, overlap 3601611 ATCACCCATCAATAA TTA-AGGGGCTTTGCGCAA AATTAAGACA TTGCGCAA-GCCCCTATAA TTTGTTTATGGCAAT TERM 3952 3601647 - 3601611 - T 100 -12.4 -3.56142 | gap 1, opp_overlap 3601607 3601611, overlap 3601607 CCCATCAATAATTAA GGGGCTTTGCGCAAAAT TAAG ACATTGCGCAA-GCCCC TATAATTTGTTTATG TERM 3953 3601611 - 3601647 + T 77 -10.3 -3.16414 | gap 1, opp_overlap 3601611 3601607, overlap 3601607 CCCATCAATAATTAA GGGGCTTTGCGCAA AATTAAGACA TTGCGCAA-GCCCC TATAATTTGTTTATG YPN_3193 3603222 - 3601798 - | Sodium:galactoside symporter TERM 3954 3602511 - 3602532 + g 71 -5.1 -4.44211 | gap 1, overlap 3602511 3602512 TTAGCGTGACCTTTT C-CGTCACCG TGA CGTTGACGCG TTCTTTTGTATTAAA TERM 3955 3603493 - 3603439 - g 83 -13.8 -3.30771 | gap 1, opp_overlap 3603443 3603448 3603453 TCAGAGGGGTCATAA TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 3956 3603443 - 3603489 + G 89 -15.4 -3.05384 | gap 1, opp_overlap 3603439, overlap 3603448 3603453 AGGGGTCATAATGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 3957 3603448 - 3603484 + G 73 -10.3 -3.19192 | gap 1, opp_overlap 3603439, overlap 3603443 3603453 TCATAATGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 3958 3603453 - 3603463 + G 76 -5.4 -4.88736 | opp_overlap 3603439, overlap 3603448 3603443 ATGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPN_3194 3603329 - 3604009 + | insertion element IS1661 DNA-binding protein YPN_3196 3605913 - 3604738 - | hypothetical protein TERM 3959 3604829 - 3604811 - Gg 71 -11 -2.73735 | overlap 3604801 3604799 3604822 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPN_3195 3604063 - 3604848 + | transposase for insertion sequence IS1661 TERM 3960 3606233 - 3606208 - g 100 -3.3 -5.85737 | gap 1, overlap 3606213 3606217 ATATGAATAAAAAAA CG-AAAGTGACT ATG AGCCACATTGCG GCCAAAGCGGGAGTA TERM 3961 3606227 - 3606213 - g 73 -6.4 -4.57518 | overlap 3606208 3606217 AATAAAAAAACGAAA GTGACT ATG AGCCAC ATTGCGGCCAAAGCG TERM 3962 3606372 - 3606360 - g 75 -9.1 -3.87815 | GGCTATGTCCATAAA GCCGT GGA ACGGC CCATTGCCAGAGATA YPN_3197 3606195 - 3607214 + | LacI-family regulatory protein TERM 3963 3607633 - 3607645 + G 79 -9.1 -4.18934 | opp_overlap 3607619, overlap 3607627 CGCCAATCGCGGCCT GGCCA TCT TGGCC TTTATTGGCATCCTC YPN_3198 3607496 - 3608875 + | Sodium:sulfate symporter TERM 3964 3608933 - 3608912 - T 76 -10.2 -3.05596 | opp_overlap 3608912 TACGCCGTCAGGGAA TTAGGCCC CTGCAT GGGCCTAA TTTATGGGGCAATGA TERM 3965 3608912 - 3608933 + T 86 -10.2 -3.86346 | opp_overlap 3608912 TACGCCGTCAGGGAA TTAGGCCC CTGCAT GGGCCTAA TTTATGGGGCAATGA YPN_3199 3609468 - 3609055 - | hypothetical protein TERM 3966 3609405 - 3609418 + g 79 -6.7 -4.59773 | TGCCGGAGACAACTT TCTGG CTAT CCAGA TTTTTCAAAGTAAGA YPN_3200 3610254 - 3610012 - | hypothetical protein YPN_3201 3614597 - 3610545 - | hypothetical protein TERM 3967 3612474 - 3612456 - G 73 -5.2 -4.60889 | overlap 3612458 AATGACCCGCAAAAA GCCCCATG CAT CATAGGCC AGTTCCGTGCGCTGC YPN_3202 3615930 - 3614611 - | hypothetical protein YPN_3203 3618181 - 3615956 - | hypothetical protein TERM 3968 3616143 - 3616173 + g 70 -9 -3.63228 | AGCGTAATACTGGTG CCGGCGGTGATA GTGATTG TGTCACCGACGG TTAATTTATCGTGCC TERM 3969 3616234 - 3616247 + g 84 -2.3 -5.58454 | TCTTGGATTTTTTAT AACCC TCGA GGGTA TTTTTTTGATATCCG TERM 3970 3618716 - 3618748 + r 76 -9.2 -3.57144 | TTAGGTTATTTATTA GGGTATCAGTACCC TCACT GCATACTGATACCC TTTACGCATAAAAAC YPN_3204 3622537 - 3618767 - | Outer membrane autotransporter barrel TERM 3971 3619991 - 3620011 + g 70 -11.1 -2.50816 | opp_overlap 3619991, overlap 3619990 GTTCACCCGAACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG TERM 3972 3622783 - 3622795 + r 70 -2.7 -5.01823 | ATAAGACCCGACTAA TTCTT TGT AGGAA TTTTCTTGTTATTGT TERM 3973 3622954 - 3622964 + r 73 -2.6 -5.15969 | opp_overlap 3622954 GTTGGCGACACTAAA TAAA TGA TTTA TTTTTTAACTTACCG TERM 3974 3623173 - 3623143 - R 83 -9.1 -4.15044 | opp_overlap 3623142 3623143 TCTCCCCTGAATAAA GGTATCAGTACCC TCACT GCATACTGATACC CTTTACGCATAAAAA YPN_3205 3625193 - 3623193 - | Outer membrane autotransporter barrel TERM 3975 3624417 - 3624437 + g 70 -11.1 -2.50816 | opp_overlap 3624417, overlap 3624416 GTTCACCCGAACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG YPN_3206 3626956 - 3625298 - | hypothetical protein TERM 3976 3627435 - 3627445 + r 75 -3.2 -5.14626 | TTCCTTACCCTACGT CGTT TCG AGCG TTTTATTTTCGTGAT YPN_3207 3629438 - 3627957 - | fructuronate transporter TERM 3977 3628983 - 3628956 - G 74 -7 -4.42788 | gap 1 GGCAACCTCATAAAA CATC-GCCAGACC AAA GATCAGGCCGATG ATAATTACCGCGGCT TERM 3978 3629620 - 3629598 - H 83 -11.4 -2.94912 | opp_overlap 3629602, overlap 3629602 GCGGCAAGCGAGAGA CAAATGGGTC TGG AACCCATTTG AACCGCATTTATGTT YPN_3208 3630840 - 3631238 + | hypothetical protein TERM 3979 3631480 - 3631460 - f 84 -9.9 -3.75933 | overlap 3631477 ATATATGTTATTAAA TATGCTTAA CTA TTAAGCATA AAATAATATAAATAG YPN_3209 3631674 - 3632549 + | hypothetical protein YPN_3210 3634647 - 3632872 - | ABC-transporter transmembrane protein TERM 3980 3633826 - 3633814 - GT 73 -9.1 -3.52079 | CAATACTTCAGACAA GGGGA TCC TCCCC CCTACCCAGCCCCAG TERM 3981 3633903 - 3633915 + gT 74 -4.7 -4.87786 | overlap 3633912 TAAAACTGTAGATCG GCCAG ACA CCGGC TTTTTCTGCCGTTAA TERM 3982 3634157 - 3634140 - GT 90 -11.3 -3.60971 | opp_overlap 3634134 AGGGTAACGTTGAAA GCATGGC TAAC GCCATGC GCCAATCTTTTAGCA YPN_3211 3636394 - 3634622 - | ABC-transporter transmembrane protein TERM 3983 3634878 - 3634897 + gr 72 -9.2 -3.14132 | overlap 3634882 CGGACCTCGTTACGG GCATCGGC ATAA GCCGTTGC TTCATCCAAGAGCAC TERM 3984 3635610 - 3635587 - GR 100 -9.6 -5.00616 | CCCCTTGGGAAAAAA GCATGATGCC AACA GGCATAATGC ACAATAAACCGAGAT TERM 3985 3635973 - 3635924 - GR 83 -2.9 -5.38326 | gap 2, overlap 3635932 CCAATCAAAGAAAAA CAGTAAAATGGCGGCAGCAATAG GCGTGA CAATTGCCGCCGCCATA-T-CGG GTAAATGGTGAGCCA TERM 3986 3635967 - 3635932 - GR 100 -15.5 -4.62102 | overlap 3635924 AGAAAAACAGTAAAA TGGCGGCAGCAATAG GCGTGA CAATTGCCGCCGCCA TATCGGGTAAATGGT YPN_3212 3637698 - 3636394 - | membrane protein TERM 3987 3637157 - 3637141 - G 100 -6.5 -5.29445 | CTGTAACAACAAAAA CCACCAC ACG GTGACGG ACCACCCCCAAACAC TERM 3988 3637394 - 3637378 - G 73 -2.9 -5.00616 | CTCTGGCGCAAAAAA CCATAGC AGC GTCATGG CAATCAAAGAGCACA YPN_3213 3638452 - 3637688 - | thioesterase TERM 3989 3637806 - 3637794 - G 76 -3.3 -5.1244 | TGATTAAGATAAAAA TGCCC ACC GGGGA ACACCTGTAGCCGAA TERM 3990 3638022 - 3638037 + g 70 -4.6 -4.64676 | overlap 3638023 TAGTCCAATGTGCTG CCACCC AATT GGGTGA TTTTGTTCAAGATAC YPN_3214 3639572 - 3638445 - | hypothetical protein TERM 3991 3638503 - 3638481 - G 100 -9.8 -4.99035 | CCATTGAGATAAAAA TGTCGCCACC TTA GGTGACGCCA TCATCGGTTCGACAA YPN_3215 3640657 - 3639569 - | hypothetical protein YPN_3216 3646430 - 3640629 - | siderophore biosysnthesis protein TERM 3992 3642698 - 3642680 - GR 70 -3.2 -4.78107 | opp_overlap 3642680 GACCATCAGGAAAAA GAAGAT TGAGGGG ATCTTC TTTGCCCTGTAAGAG TERM 3993 3643962 - 3643946 - GR 93 -12.3 -3.19192 | CTGGAGGTAAGTTAA CGGGGAT CCA ATCCCCG GAAAGCAAGATATAA TERM 3994 3644859 - 3644835 - GR 88 -9.9 -4.21933 | TGAATGCCAAAACAA GGGCGAGTCAC AAA GTGCCTCTCCC GTGCCGACCTCCTCC TERM 3995 3645168 - 3645182 + gr 90 -11.4 -3.61398 | AACGATGGGCATTCT GGCGTG CCC CACGCC TTGTTGCCGCCCCCA YPN_3217 3648131 - 3646443 - | siderophore biosysnthesis protein TERM 3996 3648133 - 3648114 - G 75 -10.8 -3.34398 | opp_overlap 3648112 3648104 3648126, overlap 3648112 TTGCTCGTGTAAATA CTGTGCAA GCCG TTGCACAG CGTGTTCAAGTTGTT YPN_3218 3654789 - 3648139 - | siderophore biosysnthesis protein TERM 3997 3650427 - 3650406 - G 77 -10.2 -3.53012 | TCCCTCCGTGGCAAA GGGATTGC AGCATG GCAATCCC CTCAGGCAGGGCATC TERM 3998 3652538 - 3652550 + g 79 -9.1 -4.13767 | opp_overlap 3652538 3652537 3652519 ACTTGCTGCCAAAAG CCCTG ATG CAGGG TTTTGGCCTCAAAAG TERM 3999 3652590 - 3652612 + g 72 -9.8 -3.41051 | opp_overlap 3652589 3652588 GGACACCCGATAACG GCTGTTGGCG ATG CGCCAGCACC TTGTCATCCACATAC TERM 4000 3653620 - 3653606 - G 75 -9.2 -3.90586 | opp_overlap 3653613 3653616 ATACGATGGGATAAA CGCGCC CGT AGCGCG TAGCGCTCCTTTGCA TERM 4001 3654386 - 3654397 + g 71 -7.2 -4.07568 | GCCAACCATTGTTTG GGCG ATTG CGCC TTTTCAAAGCGACAG YPN_3219 3655584 - 3654805 - | transposase/IS protein TERM 4002 3655503 - 3655517 + g 77 -11.4 -3.3506 | overlap 3655516 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_3220 3656606 - 3655584 - | transposase for insertion sequence IS100 TERM 4003 3656628 - 3656610 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_3221 3660033 - 3656620 - | hypothetical protein TERM 4004 3656685 - 3656709 + g 70 -3 -4.75472 | gap 1, overlap 3656687 TCACTATTGCACCGT TC-GTTACATT TATT GATGTAACTGA TTTTATTGATGTGGC TERM 4005 3659241 - 3659225 - G 74 -7.9 -4.20106 | overlap 3659214 3659226 AAATCCCACGCAAAA TCGGGGG CAG CCCCGGA GTTAGCCTGATAATC TERM 4006 3659827 - 3659814 - G 70 -2.3 -4.91511 | overlap 3659800 AGCTTATGACAAAAA GCGAG CCTC CTGGC ATGAGCAGAATAGCA YPN_3222 3662256 - 3660184 - | TonB-dependent outer membrane receptor TERM 4007 3661992 - 3661982 - G 83 -3.2 -5.44119 | CGCATGGTAAAAAAA CCTG CGT CAGA TGGATTGCCCGCTTT TERM 4008 3662091 - 3662108 + g 76 -2.7 -5.2112 | CAAAGCCCGTTAATA CACTTAT ACTT ATGGGTG TTTTTTGCTGCTGTT TERM 4009 3662603 - 3662570 - R 100 -16.1 -3.42861 | overlap 3662564 AAGTCACAACATTAA TAGGGTACTGGCAAG CTAA CACGCCAGTACCCTA CATGGAGATAAGGCA YPN_3223 3663876 - 3662644 - | peptidase T YPN_3224 3665510 - 3663954 - | integral membrane efflux protein TERM 4010 3665307 - 3665286 - G 74 -7.3 -4.17556 | gap 1, opp_overlap 3665302 3665306, overlap 3665287 CATAGTGGTAATAAA GGTCACCAGT TCA ACCGGTG-CC AACATATTGGTAACT TERM 4011 3665402 - 3665382 - G 75 -8.9 -3.83756 | AAACGATAATCCAAA GGAGAGTGC CCA GCACACCCC CAGCGCGTAAATAAA YPN_3225 3666229 - 3668055 + | leucine-rich repeat-containing protein TERM 4012 3668114 - 3668084 - f 100 -11.3 -5.26316 | GTATCCCATAAAAAA CGGCGCATATT CTGTCCTGC AATATGCGCCG CAGATAGGTCATTCT YPN_3226 3668264 - 3669139 + | leucine-rich repeat-containing protein TERM 4013 3669385 - 3669357 - f 90 -11 -3.9749 | gap 1 AGGCAGAAGAGTAAA GCG-TCCGCGCCA GGGA TGGTGCGGATCGC CCCCCAAGGAAGGGT TERM 4014 3669547 - 3669517 - f 100 -11.3 -5.26316 | overlap 3669499 TTATCTCATAAAAAA CGGCGCATATT CTGTCCTGC AATATGCGCCG TAGATAGGTCATTCT TERM 4015 3669876 - 3669864 - g 80 -10.5 -3.73647 | GGTACTGACGAACAA CGGCG CTT CGCCG TGGAATGCATGAAAG TERM 4016 3670763 - 3670773 + G 91 -6.8 -5.08088 | AGAAGCTAACTCAGC CGCT TTT AGCG TTTTTCTTCACCGTT TERM 4017 3671114 - 3671095 - g 74 -3.6 -5.02231 | overlap 3671097 3671112 TAAAAATACTAAAAA CACTGAAT GTAA ATTCAGTC GATGATATCGAAGTC YPN_3227 3669702 - 3671582 + | leucine-rich repeat-containing protein TERM 4018 3671642 - 3671612 - T 100 -11.3 -5.26316 | opp_overlap 3671612 TTATCCCATAAAAAA CGGCGCATATT CTGTCCTGC AATATGCGCCG TTGATCATCATGTCG TERM 4019 3671612 - 3671642 + T 86 -11.3 -3.24188 | opp_overlap 3671612 TTATCCCATAAAAAA CGGCGCATATT CTGTCCTGC AATATGCGCCG TTGATCATCATGTCG YPN_3228 3682802 - 3671685 - | autotransporter protein TERM 4020 3671824 - 3671834 + g 72 -8.2 -3.92542 | AGCTCCGCGATATTC GCCG TCC CGGC TTGTTTCACCGTGAC TERM 4021 3676348 - 3676361 + g 71 -6.7 -4.13767 | CCGACGGTGGTCACA CTGTC ATCC GACAG TTTTAAGGTGGCACG TERM 4022 3678169 - 3678182 + g 71 -6.7 -4.13767 | CCGACGGTGGTCACA CTGTC ATCC GACAG TTTTAAGGTGGCACG TERM 4023 3682558 - 3682536 - G 72 -9.9 -3.34222 | gap 1 AGTACCATTGGATAA CGC-GGCAGA AAGC TCTGCCTGCG TGCTGACAGTAATAT TERM 4024 3683262 - 3683252 - R 82 -3.2 -5.5208 | GTATAATATAAAAAA GGAA AAA TCCC ACAAAAATACAAGAA TERM 4025 3683395 - 3683385 - R 79 -3.2 -5.35224 | CTTATAAAAAGAAAA GTAG ACA CCAC AATAATTTATTAAAT TERM 4026 3683434 - 3683450 + r 82 -5.9 -5.02645 | AACAACAAGATGATT CAGTAAT GTA GTTACTG TTTATTTTATTTGTT YPN_3229 3684243 - 3683656 - | hypothetical protein TERM 4027 3683975 - 3683956 - G 70 -2.2 -5.04733 | gap 1, overlap 3683937 3683958 3683960 GAATGACAAATAAAA TCTAT-CGC CCA GCGGATAAA CAAATTTCTGTTGCC TERM 4028 3684309 - 3684291 - H 100 -12.4 -4.13995 | TGCCTACAAACTAAA CCCTCCCC CTG GGGGAAGG TCAAAGGCAGAATTG YPN_3230 3684521 - 3686011 + | enterotoxin-like protein TERM 4029 3686077 - 3686036 - T 86 -11.5 -3.34715 | opp_overlap 3686039 3686040, overlap 3686034 3686037 CACTGCCCCCAAAGA GTCACCCATACCCACCGGT CTTA ACCGGCGGGTATGGGCTTT ATGACAAAACAGCAT TERM 4030 3686076 - 3686037 - T 100 -15 -2.60615 | opp_overlap 3686039 3686040, overlap 3686036 3686034 ACTGCCCCCAAAGAG TCACCCATACCCACCGGT CTTA ACCGGCGGGTATGGGCTT TATGACAAAACAGCA TERM 4031 3686039 - 3686074 + T 100 -17.6 -3.85698 | opp_overlap 3686037 3686036 3686034, overlap 3686040 TGCCCCCAAAGAGTC ACCCATACCCACCGGT CTTA ACCGGCGGGTATGGGC TTTATGACAAAACAG TERM 4032 3686040 - 3686073 + T 100 -21.1 -2.91276 | opp_overlap 3686037 3686036 3686034, overlap 3686039 GCCCCCAAAGAGTCA CCCATACCCACCGGT CTTA ACCGGCGGGTATGGG CTTTATGACAAAACA YPN_3231 3689265 - 3686146 - | integral membrane efflux protein TERM 4033 3687791 - 3687777 - G 70 -9.2 -3.50853 | overlap 3687786 GCCGCTTAAGCAGAA CGGCAC ACA GCGCCG GACTCAGCGTTAACG TERM 4034 3687939 - 3687906 - G 70 -8.9 -3.52906 | gap 1, overlap 3687904 CGATTGGCACAAATA CCG-CCATCAACACCA GTG TGGTGGCGATGATCGG CCCGGCAATCTGGCT YPN_3232 3690555 - 3689278 - | drug efflux protein YPN_3233 3691103 - 3690930 - | hypothetical protein TERM 4035 3691941 - 3691918 - g 73 -8.8 -3.67597 | opp_overlap 3691930 GCTGCCAGCGAAGAA CGTTTCCGCC ATGT GGCAGAATCG GCCAGTGATTGGTTA YPN_3234 3691195 - 3693561 + | membrane protein TERM 4036 3693776 - 3693794 + T 77 -11 -2.73735 | overlap 3693769 3693786 3693788 TGCTTTTCTACCTGA GTCCGGTA TTC TGCCGGAC TCATTCCGCCTGTTT YPN_3235 3694542 - 3693757 - | transposase for insertion sequence IS1661 YPN_3236 3695132 - 3694596 - | insertion element IS1661 DNA-binding protein TERM 4037 3695162 - 3695116 - G 89 -15.4 -3.05384 | gap 1, opp_overlap 3695122 3695154, overlap 3695121 3695142 GGGTGTTTCATTGAA CCGAACCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GGTTCAG TGCAACTTGGCCCCT TERM 4038 3695157 - 3695121 - G 73 -10.3 -3.19192 | gap 1, opp_overlap 3695122 3695154, overlap 3695116 3695142 TTTCATTGAACCGAA CCTCCAGATCATGGAT AAAAAG ATCCAAGATCTGG-GG TTCAGTGCAACTTGG TERM 4039 3695122 - 3695157 + g 79 -12.7 -3.06831 | opp_overlap 3695121 3695116 3695142, overlap 3695154 TTCATTGAACCGAAC CTCCAGATCATGGAT AAAAAG ATCCAAGATCTGGGG TTCAGTGCAACTTGG TERM 4040 3695152 - 3695142 - R 75 -5.4 -4.88736 | opp_overlap 3695122, overlap 3695121 3695116 GATCATGGATAAAAA GATC CAA GATC TGGGGTTCAGTGCAA rpsO 3695467 - 3695198 - | 30S ribosomal protein S15 TERM 4041 3695575 - 3695592 + r 91 -6.9 -5.56263 | opp_overlap 3695578, overlap 3695578 TCGCGGGATCGCAAG GCAGGCC GTGT GGCCTAC TTTTTATTTTCTACT truB 3696563 - 3695589 - | tRNA pseudouridine synthase B rbfA 3696973 - 3696563 - | ribosome-binding factor A TERM 4042 3696987 - 3697018 + r 81 -10.8 -3.36515 | opp_overlap 3696990, overlap 3696985 3696988 ATTTGGATTCTCCAG ACAGTTTGGGGGGC CAAG GCCCCCCAAATGGA TATTTGCAAATCAGA TERM 4043 3696988 - 3697017 + r 95 -14.3 -2.61695 | opp_overlap 3696990, overlap 3696987 3696985 TTTGGATTCTCCAGA CAGTTTGGGGGGC CAAG GCCCCCCAAATGG ATATTTGCAAATCAG TERM 4044 3697015 - 3696990 - R 93 -13.3 -2.87931 | opp_overlap 3696988 3696987 3696985 TGGATTCTCCAGACA GTTTGGGGGGC CAAG GCCCCCCAAAT GGATATTTGCAAATC infB 3699717 - 3697039 - | translation initiation factor IF-2 TERM 4045 3699208 - 3699221 + g 76 -3.1 -5.19261 | ACGTGCTTTATCGGT CTGAG CTGG CTTAG TTTTTTCGTCGGTTT nusA 3701229 - 3699742 - | transcription elongation factor NusA YPN_3242 3701703 - 3701251 - | hypothetical protein TERM 4046 3701741 - 3701728 - R 100 -8.1 -5.80248 | CAAGACATAAAAAAA GGGCT TAAT AGCCC AGTGATTCTGCTGTC TERM 4047 3701791 - 3701763 - R 100 -12.5 -3.90744 | opp_overlap 3701769 3701770, overlap 3701770 TCTGCTGTCAAATAA CAAAAAACCCCGA AAT TCGGGGCTTTATG CAACTGGACCCTGTT TERM 4048 3701769 - 3701785 + r 72 -7.9 -3.87815 | opp_overlap 3701763 3701770, overlap 3701770 GTCAAATAACAAAAA ACCCCGA AAT TCGGGGC TTTATGCAACTGGAC TERM 4049 3701784 - 3701770 - R 100 -11.4 -5.72254 | opp_overlap 3701769 3701770, overlap 3701763 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 4050 3701770 - 3701784 + r 83 -11.4 -2.92475 | opp_overlap 3701770 3701763, overlap 3701769 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 4051 3701808 - 3701820 + r 76 -10.5 -3.06501 | AACTGGACCCTGTTT GCCGC AAA GCGGC TTCGGTGCAACTCTC TERM 4052 3701920 - 3701906 - R 100 -7.2 -5.79526 | opp_overlap 3701908 ACATTTGAAAAAAAA CACTTT AGG AAAGTG GTTGCGGGGGCCGGA TERM 4053 3702155 - 3702185 + r 74 -9.9 -3.08603 | opp_overlap 3702153, overlap 3702154 GGCACTGATTCAACT GGTTGTTTTTACT GTCCA AGTAACAACAACC CTTTTAAAACTCTTT secG 3702570 - 3702235 - | preprotein translocase subunit SecG TERM 4054 3702760 - 3702780 + r 83 -11.1 -3.53761 | TCAGCGTAATTTCTT GGGGAAGAG TGC CTCTCCCCC TTTAAAAAAGGGTTA glmM 3704133 - 3702793 - | phosphoglucosamine mutase TERM 4055 3703244 - 3703234 - G 71 -6.8 -4.24342 | opp_overlap 3703233 TTTGGCACGAACAAA TGGG ATA CCCA GATCTTTCAGGGCTA folP 3704976 - 3704143 - | dihydropteroate synthase TERM 4056 3705035 - 3705052 + r 90 -11.3 -3.71284 | opp_overlap 3705035 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA TERM 4057 3705052 - 3705035 - R 100 -11.3 -5.84381 | opp_overlap 3705035 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA hflB 3707030 - 3705096 - | ATP-dependent metalloprotease TERM 4058 3706942 - 3706924 - G 72 -8.2 -3.83205 | ACGTCGGACATGAAA GTAGAGTA ATC CACTCTAC GGCCATTCGATTCGC rrmJ 3707716 - 3707087 - | 23S rRNA methyltransferase J YPN_3248 3707863 - 3708156 + | hypothetical protein TERM 4059 3708178 - 3708188 + T 74 -6.8 -4.35483 | opp_overlap 3708177 3708178 TTGTTTTAGAGAAAG GTGC CAT GCAC TTTGTTCTGATAAAA TERM 4060 3708198 - 3708223 + T 100 -10.5 -4.88405 | opp_overlap 3708204, overlap 3708199 ATGCACTTTGTTCTG ATAAAAGGCCG CTTG CGGCCTTTTAC TTTTCTTTACAACTT TERM 4061 3708199 - 3708222 + T 100 -14 -3.51958 | opp_overlap 3708204, overlap 3708198 TGCACTTTGTTCTGA TAAAAGGCCG CTTG CGGCCTTTTA CTTTTCTTTACAACT TERM 4062 3708217 - 3708204 - T 88 -9.5 -4.36914 | opp_overlap 3708199 3708198 TTTGTTCTGATAAAA GGCCG CTTG CGGCC TTTTACTTTTCTTTA greA 3708760 - 3708284 - | transcription elongation factor GreA TERM 4063 3708611 - 3708626 + g 72 -4 -4.88918 | gap 1, overlap 3708603 TTGTTGCTCACGGGC TGCGTGA TAT TC-CGCA TTTTCTTTCAAGTCG TERM 4064 3708895 - 3708875 - H 100 -3.9 -6.5058 | ATAAACAAAAAAAAA CCTAGGGCC AAA AACCCCAAG TCAGGATCAATTTTG TERM 4065 3709967 - 3709948 - g 70 -2.2 -5.03715 | gap 1 ATCATGCTGAAAAAA TCAGACAAT ATG ATCG-CTGA CACCGTCTTCAGAAC YPN_3250 3709018 - 3710466 + | D-alanyl-D-alanine carboxypeptidase/endopeptidase YPN_3251 3710472 - 3711134 + | DNA-binding transcriptional regulator BasR YPN_3252 3711131 - 3712198 + | sensor protein BasS/PmrB TERM 4066 3712271 - 3712240 - T 100 -9.5 -5.0133 | CACCCTGCCAAAAAA TAAGGGCCACCAC GAAAAA ATGGCAGCCCTTA TTCAAAGAATAACTG obgE 3713465 - 3712293 - | GTPase ObgE TERM 4067 3713489 - 3713514 + r 79 -6.9 -4.62441 | gap 1, opp_overlap 3713485, overlap 3713489 TCCGTAAATCATTCA CC-GGCTGCTTT TGC AAAGCAACCAGG TTTATTTCTGTCCGA YPN_3254 3714452 - 3713466 - | hypothetical protein TERM 4068 3714511 - 3714489 - R 100 -12 -4.84529 | opp_overlap 3714489 CCAGAAATGTAAAAA GCCCCGCAAC GAA ATTGCAGGGC TTACATCTATTTACA rpmA 3714797 - 3714540 - | 50S ribosomal protein L27 rplU 3715128 - 3714817 - | 50S ribosomal protein L21 YPN_3257 3715388 - 3716359 + | octaprenyl diphosphate synthase TERM 4069 3716405 - 3716387 - T 89 -10.3 -3.96224 | opp_overlap 3716387 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG TERM 4070 3716387 - 3716405 + T 89 -10.3 -3.93236 | opp_overlap 3716387 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG YPN_3258 3716803 - 3716456 - | hypothetical protein TERM 4071 3716854 - 3716844 - H 73 -2.6 -5.16969 | GACACAAAAAAGAAA TTTT TAG AAAA CATTTAAATTTTTTT YPN_3259 3716987 - 3717262 + | DNA-binding protein TERM 4072 3717360 - 3717392 + T 95 -7.8 -5.08178 | opp_overlap 3717360 ATCATTACAATATCA GGGGCTACTG TTCGTACTCTTTT CAGTAGCCCC TTTTTATCTCTATAT TERM 4073 3717646 - 3717631 - T 74 -10.4 -2.59431 | overlap 3717627 GCCTCGCAGAAGCGA GGCCCA TGGA TGGGCC GAGTAACGCTTGCAG YPN_3260 3718634 - 3717696 - | malate dehydrogenase YPN_3261 3719098 - 3719568 + | arginine repressor TERM 4074 3719615 - 3719597 - f 75 -7.4 -4.3129 | opp_overlap 3719597 CACCGAGCAGTAAAA TGCGGC CTTATGT GCCGCA TTATCTCACCCTCGC YPN_3262 3719957 - 3720220 + | hypothetical protein TERM 4075 3720324 - 3720350 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3720313, overlap 3720319 3720325 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4076 3720325 - 3720351 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3720313, overlap 3720319 3720324 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4077 3720414 - 3720437 + T 85 -9.6 -4.12188 | overlap 3720416 TTGTCAGCAGTCTGC AATGCCCCAT TAAC ATGGGGCATA TTTTCAAGATGATGA TERM 4078 3720416 - 3720435 + T 93 -12.2 -3.6581 | overlap 3720414 GTCAGCAGTCTGCAA TGCCCCAT TAAC ATGGGGCA TATTTTCAAGATGAT YPN_3263 3721898 - 3720516 - | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase TERM 4079 3722344 - 3722354 + G 73 -5.4 -4.72272 | opp_overlap 3722342 3722344 CTCCGAAGAAGAAGA TGAC ATT GTCA TTTTTGATGGCGGAA TERM 4080 3723033 - 3723023 - g 73 -5.4 -4.63218 | TTCGTGGGAACAAAA TCCA TGG TGGA AGATGCGGAAGGGTT YPN_3264 3722069 - 3723082 + | fructose-1,6-bisphosphatase TERM 4081 3723122 - 3723142 + F 100 -11.1 -5.72622 | opp_overlap 3723114 3723122 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC TERM 4082 3723142 - 3723122 - f 100 -13.3 -3.40836 | opp_overlap 3723122, overlap 3723114 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC YPN_3265 3723282 - 3723809 + | inorganic pyrophosphatase TERM 4083 3723885 - 3723834 - T 100 -7.2 -5.60993 | gap 1, opp_overlap 3723834, overlap 3723852 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 4084 3723834 - 3723885 + T 100 -9.4 -5.84381 | gap 1, opp_overlap 3723834 3723852 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 4085 3723868 - 3723852 - T 73 -10.1 -3.04144 | opp_overlap 3723834, overlap 3723834 CGCCTATCGTGAACA GGCCCCA AAA TAGGGCC GTTTACCTTGTGCGG YPN_3266 3724283 - 3723927 - | hypothetical protein YPN_3267 3728203 - 3724286 - | hypothetical protein YPN_3268 3729936 - 3728200 - | hypothetical protein TERM 4086 3730726 - 3730700 - g 82 -7.3 -4.68424 | CAAGCCATGGAAAAA GCCGGTGATCA ACGGG TGATTACCAGC GAAATTACGGTTGCC YPN_3269 3730211 - 3730849 + | methionine sulfoxide reductase A TERM 4087 3731374 - 3731395 + G 71 -5.2 -4.43844 | CCGCTTTCTCCCCTT CGTTCAAA CTCGTT TTTGAGCG TTTTATGGCTCCTGA TERM 4088 3731778 - 3731793 + G 74 -7.6 -4.12738 | CCTTCCTCCATGACT TCACGT GAAA ACGTGA TTTACTTTGATCTAC YPN_3270 3731127 - 3732458 + | hypothetical protein TERM 4089 3732495 - 3732520 + T 77 -10.4 -3.14468 | opp_overlap 3732498, overlap 3732498 TGATCACGGTAAACA TAACGGCCCC TGAGTT GGGGCCGTGA TTAAATCTGCTCAGG TERM 4090 3732498 - 3732517 + T 83 -12.1 -2.77658 | opp_overlap 3732498, overlap 3732495 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC TERM 4091 3732517 - 3732498 - T 100 -12.1 -3.82946 | opp_overlap 3732495 3732498 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC YPN_3271 3732778 - 3732566 - | hypothetical protein TERM 4092 3733660 - 3733632 - g 84 -15.3 -2.84812 | opp_overlap 3733630 3733630, overlap 3733654 ACTGACATCAGCAGA GGTGCAGCAGGTC ATC GACCAACTGCACC AACTTGTGCAGCAAT YPN_3272 3733114 - 3733677 + | hypothetical protein YPN_3273 3734420 - 3733680 - | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase cpdB 3734867 - 3736825 + | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 4093 3736896 - 3736952 + F 100 -15.7 -3.02096 | opp_overlap 3736896 3736897, overlap 3736903 3736946 GGAGTTATATCACAA TCTATAACATGCATTTATTATGCATGT TAT AGGTGTATAATAAATACATGTTATAGA TATATAATTACTCAA TERM 4094 3736952 - 3736896 - f 100 -13.6 -3.47573 | opp_overlap 3736896 3736903 3736946, overlap 3736897 GGAGTTATATCACAA TCTATAACATGCATTTATTATGCA TGTTATAGG TGTATAATAAATACATGTTATAGA TATATAATTACTCAA TERM 4095 3736927 - 3736897 - f 95 -14.3 -2.68223 | opp_overlap 3736896 3736903, overlap 3736896 GAGTTATATCACAAT CTATAACATGCAT TTATT ATGCATGTTATAG GTGTATAATAAATAC YPN_3275 3736980 - 3737645 + | cell morphogenesis/cell wall metabolism regulator TERM 4096 3737725 - 3737693 - T 100 -22.9 -4.44046 | opp_overlap 3737700, overlap 3737694 CTTATCGTAAATAAA CGCCAAAGGGCGACA CCC TGTCGCCCTTTGGCA TAATCGGTACCAAGG TERM 4097 3737724 - 3737694 - T 100 -24.2 -3.25946 | opp_overlap 3737700, overlap 3737693 TTATCGTAAATAAAC GCCAAAGGGCGACA CCC TGTCGCCCTTTGGC ATAATCGGTACCAAG TERM 4098 3737700 - 3737718 + T 100 -14.6 -3.62275 | opp_overlap 3737694 3737693 TAAATAAACGCCAAA GGGCGACA CCC TGTCGCCC TTTGGCATAATCGGT YPN_3276 3738363 - 3737743 - | peptidyl-prolyl cis-trans isomerase YPN_3277 3738706 - 3739446 + | hypothetical protein YPN_3278 3739586 - 3740041 + | hypothetical protein TERM 4099 3740089 - 3740057 - T 100 -11.3 -4.50058 | opp_overlap 3740064, overlap 3740061 3740063 3740064 TACCGATAACCAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 4100 3740085 - 3740061 - T 100 -9.9 -4.80487 | opp_overlap 3740064, overlap 3740057 3740063 3740064 GATAACCAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4101 3740083 - 3740063 - T 100 -12.5 -3.99559 | opp_overlap 3740064, overlap 3740061 3740057 3740064 TAACCAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4102 3740064 - 3740082 + T 100 -16 -4.8048 | opp_overlap 3740063 3740061 3740057 3740064 AACCAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4103 3740082 - 3740064 - T 100 -16 -2.98108 | opp_overlap 3740064, overlap 3740063 3740061 3740057 AACCAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_3279 3740621 - 3740163 - | transposase for the IS1541 insertion element TERM 4104 3740734 - 3740752 + r 100 -16 -4.36914 | opp_overlap 3740734 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAG TERM 4105 3740752 - 3740734 - R 100 -16 -3.07307 | opp_overlap 3740734 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAG TERM 4106 3740796 - 3740768 - R 95 -14 -2.57132 | opp_overlap 3740773, overlap 3740773 TTTTCTGGGCACAAG CAAAACGCCAGC ACTAG GCTGGCGTTTTA ACAGGTTACAGCCGC TERM 4107 3740791 - 3740773 - R 100 -11.7 -4.48987 | opp_overlap 3740773, overlap 3740768 TGGGCACAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA TERM 4108 3740773 - 3740791 + r 100 -11.7 -4.11484 | opp_overlap 3740768 3740773 TGGGCACAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA rplI 3741269 - 3740817 - | 50S ribosomal protein L9 rpsR 3741536 - 3741309 - | 30S ribosomal protein S18 YPN_3282 3741861 - 3741541 - | primosomal replication protein N rpsF 3742259 - 3741867 - | 30S ribosomal protein S6 TERM 4109 3741914 - 3741939 + g 70 -9.1 -3.50832 | gap 1, overlap 3741910 3741913 CATTGGCTTCTGACG CGAA-GTCGTGA CGC TCACGGCGTTCG TCTTTCGCTTTAACC YPN_3284 3743327 - 3742626 - | esterase TERM 4110 3743362 - 3743380 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_3285 3743384 - 3744406 + | transposase for insertion sequence IS100 TERM 4111 3744487 - 3744473 - g 77 -11.4 -3.3506 | overlap 3744464 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_3286 3744406 - 3745185 + | transposase/IS protein YPN_3287 3745340 - 3745236 - | hypothetical protein YPN_3288 3745525 - 3745836 + | lipoprotein YPN_3289 3747551 - 3745908 - | isovaleryl CoA dehydrogenase TERM 4112 3747712 - 3747691 - R 71 -3 -5.08088 | opp_overlap 3747692, overlap 3747692 AATTCCCAACAAAAA GCCAACAT ACAAAG ATGTTGGT TTGAGGTTATTGACA TERM 4113 3747791 - 3747817 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 3747780, overlap 3747786 3747792 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4114 3747792 - 3747818 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 3747780, overlap 3747786 3747791 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4115 3747881 - 3747902 + r 75 -8.8 -3.60098 | TTGTCAGCAGTCTGA GCCAACAT ACAAAG ATGTTGGC TTTAGGCTGCGGAGT YPN_3290 3748699 - 3747959 - | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 4116 3748784 - 3748760 - R 74 -10 -3.08072 | gap 1 AATAATTAAATTATA TG-CGGGCGAC AAAA GCCGCCCGGCA AGTAGCACACCACCA YPN_3291 3751352 - 3748818 - | exoribonuclease R TERM 4117 3749007 - 3749021 + g 91 -9.2 -4.82901 | GTTTACCGGTTTTTT CGCCCG ACG TGGGCG TTTTTGTCCACCCGC TERM 4118 3749949 - 3749938 - G 76 -7.2 -4.36914 | opp_overlap 3749937 TGTTTTTCCACAAAA CGCG CCGC CGCG ATATTCGCCAGAATC TERM 4119 3751623 - 3751592 - R 84 -5.1 -5.30155 | overlap 3751596 TTATTAAGTAAAAAA CCTACTCAACAAG TAATAG CTTGTAGAGCGGG GAATTATCTTTAACC YPN_3292 3752018 - 3751593 - | transcriptional repressor NsrR TERM 4120 3752300 - 3752271 - R 100 -15.9 -2.80816 | opp_overlap 3752271 3752274 3752278, overlap 3752274 3752278 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4121 3752271 - 3752300 + r 100 -13.7 -3.53224 | opp_overlap 3752271 3752274 3752278, overlap 3752274 3752278 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4122 3752297 - 3752274 - R 91 -11.8 -3.55447 | opp_overlap 3752271 3752274 3752278, overlap 3752271 3752278 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4123 3752274 - 3752297 + r 81 -9.6 -3.90744 | opp_overlap 3752274 3752271 3752278, overlap 3752271 3752278 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4124 3752293 - 3752278 - R 87 -8.2 -4.41114 | opp_overlap 3752274 3752271 3752278, overlap 3752274 3752271 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC TERM 4125 3752278 - 3752293 + r 73 -6 -4.56978 | opp_overlap 3752278 3752274 3752271, overlap 3752274 3752271 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC YPN_3293 3753685 - 3752387 - | adenylosuccinate synthetase TERM 4126 3753173 - 3753196 + g 80 -10.4 -3.67976 | opp_overlap 3753166, overlap 3753167 3753177 GTAATGCACCAACTG GAAGTTGTGG TATT CCACAATTTC TTTCAGCTTGATAGC TERM 4127 3753177 - 3753192 + g 79 -7.6 -4.46233 | opp_overlap 3753166, overlap 3753167 3753173 TGCACCAACTGGAAG TTGTGG TATT CCACAA TTTCTTTCAGCTTGA TERM 4128 3753315 - 3753325 + g 76 -6.8 -4.57341 | GTACCGATAGCTTTT GCAC CAC GTGC TTTTTCACGCGCATT YPN_3294 3753985 - 3753785 - | membrane protein TERM 4129 3754043 - 3754025 - R 95 -9.5 -4.43213 | TTCAACACATGAAAA GGCCCGC ACTAG ACGGGCC TCGGTGTTACGTTCA YPN_3295 3755161 - 3754157 - | FtsH protease regulator HflC YPN_3296 3756424 - 3755165 - | FtsH protease regulator HflK TERM 4130 3756255 - 3756268 + g 74 -2.3 -5.19261 | CCGCTACCTTTGCCA CCGAG GCTA CTCAG TTTTTTGCTCAGTTT YPN_3297 3757951 - 3756665 - | putative GTPase HflX hfq 3758355 - 3758050 - | RNA-binding protein Hfq miaA 3759412 - 3758471 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 4131 3758911 - 3758893 - G 100 -3.9 -6.23545 | gap 1, opp_overlap 3758900 3758901, overlap 3758895 CTGAAATAAAAAAAA CT-TCCAG TGCT CTGGAGAG CCTTTGGGGATCATT mutL 3761312 - 3759405 - | DNA mismatch repair protein YPN_3301 3763241 - 3761328 - | N-acetylmuramoyl-L-alanine amidase-family protein TERM 4132 3761525 - 3761539 + g 71 -11.4 -2.72511 | overlap 3761524 CTGCCGTTACCGTAC TGCCCG ACG CGGGCA CTTTCAACCGCTGGC TERM 4133 3762772 - 3762796 + g 73 -2.8 -5.04601 | gap 1 ACCGTGTAGTTATTG CCCG-ACTGTT GGGT GACAGCACGGG TTTTTACTTTCTGCG TERM 4134 3762821 - 3762835 + g 71 -5.7 -4.36433 | TCTGCGTCAGTTCCA GTACC AGGCG GGTAC TTTGTTCATCTTTCG YPN_3302 3763719 - 3763249 - | putative ATPase YPN_3303 3765244 - 3763730 - | hypothetical protein TERM 4135 3764188 - 3764200 + gH 80 -9.1 -3.97602 | TAAGTGCATCCGCAT CCCAC AAG GTGGG TTTATCACTCTGTTG TERM 4136 3765319 - 3765337 + Gr 71 -8.2 -3.53012 | opp_overlap 3765318 TAGGTTTCCAGCAAG TCGGTATT TGC GATACCGA TTTGACGGCGGAAGA TERM 4137 3765415 - 3765397 - gR 82 -10.3 -3.59087 | AATATCATGGCGAAA TGGCGTG GATGG CACGCCA CGGTATGCTGCGTGC TERM 4138 3765541 - 3765524 - gR 75 -8.5 -3.86202 | opp_overlap 3765527, overlap 3765527 TGCCAGTACATTAAA TAACCCA GAAT TGGGTTA TGTCAGCCGCTATGC YPN_3304 3765243 - 3766478 + | iron-sulfur cluster-binding protein TERM 4139 3766563 - 3766544 - TR 84 -2.9 -5.69262 | gap 1 GCATAAAAATAAAAA TGC-CTTG GCAAT CAAGTGCA AAAAAAAGCACAAGT TERM 4140 3766823 - 3766839 + Tr 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4141 3766871 - 3766901 + Tr 89 -7 -5.40464 | overlap 3766872 CTATTCCCGCGTCGC CTGTATAAATACCC ATT GGTTATTTATACAC TTTTTATTTCTGATG TERM 4142 3766872 - 3766900 + Tr 86 -10.5 -3.82652 | overlap 3766871 TATTCCCGCGTCGCC TGTATAAATACCC ATT GGTTATTTATACA CTTTTTATTTCTGAT TERM 4143 3766990 - 3767006 + Tr 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4144 3767066 - 3767081 + Tr 70 -7.6 -3.73647 | TGTACTAAATCTGTC TTCGCA TGCT TGCGAA TTCTTCATCGGTACG TERM 4145 3767623 - 3767606 - TR 77 -6.3 -4.71776 | TAAGATTGAATAAAA TGCTCAC GATA GTAAGCA AGCTCGGCGACTGAC YPN_3305 3768273 - 3767590 - | oligoribonuclease YPN_3306 3768335 - 3769387 + | ribosome-associated GTPase TERM 4146 3769526 - 3769554 + F 70 -5.8 -4.38141 | overlap 3769528 GAAGGGTCTGACAGG GTGGGCGCAGAG CGATA CAATGCGCCCCC TTATTTTATCTAACG YPN_3307 3769589 - 3770470 + | phosphatidylserine decarboxylase TERM 4147 3771181 - 3771171 - g 76 -4.6 -5.04175 | overlap 3771172 CGAATTATACAAAAA GCGC GAA GCAC GGGTTCAGGCTCAGC TERM 4148 3772318 - 3772328 + G 70 -4.6 -4.65838 | opp_overlap 3772313, overlap 3772313 CCAACACAAGTTGCG CGCG CAA TGCG TTTTTACCGTCTGTC TERM 4149 3772770 - 3772743 - g 71 -11.3 -2.71364 | gap 1, opp_overlap 3772741 TGATCGCGCCAAGCA GCGCCGCGCCGA TATTC TC-GCGCAGCGC GCCCGTGGTGAGGAA YPN_3308 3770512 - 3773853 + | hypothetical protein TERM 4150 3773898 - 3773877 - T 91 -6.5 -5.48514 | opp_overlap 3773877 3773879, overlap 3773879 AGTAAGAAATAAAAA TGCCCTGCG CCTT CACAGGTCA GGGTATTTGTTTTTG TERM 4151 3773877 - 3773903 + T 82 -5.9 -4.97405 | gap 1, opp_overlap 3773877 3773879, overlap 3773879 AGTAAGAAATAAAAA TGCCCTGCGCCT TCAC AGGT-CAGGGTA TTTGTTTTTGTAAGT YPN_3309 3774951 - 3773974 - | lysyl-tRNA synthetase YPN_3310 3775302 - 3775111 - | membrane protein YPN_3311 3775409 - 3777232 + | fumarate reductase flavoprotein subunit YPN_3312 3777225 - 3777959 + | fumarate reductase iron-sulfur subunit TERM 4152 3778035 - 3778046 + G 74 -2.2 -5.10064 | overlap 3778015 3778022 CTGGTGGCAACAGCT TGGT TTCT ACCG TTTTTATATGTTGCG YPN_3313 3777976 - 3778368 + | fumarate reductase subunit C YPN_3314 3778385 - 3778741 + | fumarate reductase subunit D TERM 4153 3778767 - 3778789 + T 100 -13.4 -4.0825 | CACATGCCATATTCG CGGCCTGCTG TTC TGGCAGGCCG TTCTTTGGTTAAAGC YPN_3315 3779367 - 3778906 - | chaperone TERM 4154 3779108 - 3779094 - G 80 -4.2 -5.09762 | AGGCCAATAGAAAAA CACTGG CAG CCATTG CGACGAGGGTAATAA YPN_3316 3780033 - 3779467 - | elongation factor P TERM 4155 3779925 - 3779940 + g 76 -8.2 -4.1466 | opp_overlap 3779915 3779925 3779924 TAACACGCGCAAAAG CCTGGC CTTT GCCGGG TTTTACGAATTCGCT YPN_3317 3780069 - 3781097 + | hypothetical protein YPN_3318 3781780 - 3781382 - | lipoprotein TERM 4156 3782327 - 3782296 - R 100 -16.8 -4.38154 | opp_overlap 3782301 3782321, overlap 3782301 ACAGTCTTCACAAAA TAAAAGCGAGCAGG TCAC CCTACTCGCTTTTA TCAACAGCTTTACCT TERM 4157 3782301 - 3782322 + r 93 -10.1 -4.37658 | opp_overlap 3782296 3782301, overlap 3782321 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT TERM 4158 3782322 - 3782301 - R 100 -12.3 -5.18371 | opp_overlap 3782301 3782321, overlap 3782296 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT groEL 3784050 - 3782404 - | chaperonin GroEL TERM 4159 3783419 - 3783429 + g 71 -6.8 -4.25056 | opp_overlap 3783418 TCAAGTTCAATAGAG CCAG TTT CTGG TTTATTGATGAAGTA groES 3784390 - 3784097 - | co-chaperonin GroES fxsA 3785223 - 3784645 - | FxsA aspA 3785671 - 3787107 + | aspartate ammonia-lyase TERM 4160 3787132 - 3787160 + F 100 -10.4 -5.04601 | gap 2, opp_overlap 3787136 TCGGTAGCCCTCTAA GGCACGCATGCTCC TCT GGA-CA-GCGTGCC TTTTTACTTTCTGGC YPN_3323 3787227 - 3788528 + | anaerobic C4-dicarboxylate transporter TERM 4161 3788532 - 3788563 + F 77 -10.2 -3.18511 | gap 1, overlap 3788537 CTGGTTCTGTAATCT GTCTGATGGGGCGCA TCA TGCGCCCCAATA-AC TTCGGTCTATCTCTC TERM 4162 3788537 - 3788559 + F 91 -13.4 -2.56571 | overlap 3788532 TCTGTAATCTGTCTG ATGGGGCGCA TCA TGCGCCCCAA TAACTTCGGTCTATC TERM 4163 3788607 - 3788620 + F 71 -9.5 -2.91126 | overlap 3788603 TCATCTTCTGACTGG CCCCG GCTT CGGGG TATAGTATGATTTGT TERM 4164 3788934 - 3788899 - g 73 -9.2 -3.75629 | gap 1 TACTGGGAAGGTAAA CTCGAACAAGAGTATGA GGT TCAG-CTCTTGTTCAAG AGCAATACTGACCAT YPN_3324 3788713 - 3789072 + | divalent-cation tolerance protein CutA dipZ 3789048 - 3790835 + | thiol:disulfide interchange protein precursor TERM 4165 3790879 - 3790837 - T 100 -8.3 -4.77173 | overlap 3790839 CGGTTACAAAATAAA TAGCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATCAA CGCTCAATCACGACA TERM 4166 3790877 - 3790839 - T 90 -10.9 -3.99938 | overlap 3790837 GTTACAAAATAAATA GCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATC AACGCTCAATCACGA YPN_3326 3793044 - 3790897 - | formate dehydrogenase H YPN_3327 3793624 - 3793067 - | 4Fe-4S ferrodoxin YPN_3328 3795662 - 3793647 - | putative oxidoreductase Fe-S binding subunit TERM 4167 3795073 - 3795085 + g 76 -5.5 -4.87803 | AGGTTAACCGGTGTT GCGTC GCG GATGC TTTTATTTGACGATG TERM 4168 3795155 - 3795171 + g 83 -9.4 -4.35461 | overlap 3795140 CATTGTGCTCATTCA GCGCCA TGTGT TGGCGC TTTTGCTGCTGTTGA TERM 4169 3795221 - 3795235 + g 71 -7.1 -4.25104 | CCACCAAGGTCAGAG CCTGC GTAGG GCAGG TTTTAATACAGGCAG TERM 4170 3795534 - 3795552 + g 77 -11.8 -3.14126 | opp_overlap 3795533, overlap 3795525 ATCGCCTTTGAATAC TTTCACCC GTG GGGTGAAA TATTCCGGTTTATCA TERM 4171 3795989 - 3795979 - H 71 -8.2 -3.42621 | opp_overlap 3795985 AACGTCAACCGACAA CGGG GTG CCCG TAAAGATAGGGCTAT YPN_3329 3796082 - 3796657 + | putative transcriptional regulator TERM 4172 3796844 - 3796828 - T 76 -10.9 -2.62616 | opp_overlap 3796827 3796826 3796823 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 4173 3796889 - 3796908 + T 100 -11.4 -4.84527 | opp_overlap 3796888 3796889 ACCATTATTTATAAG GCCTCGCT GCAA AGCGGGGC TTTTTCGTATCTGGA YPN_3330 3799866 - 3797311 - | enhancing factor TERM 4174 3797850 - 3797871 + g 70 -2.9 -4.89567 | overlap 3797852 3797852 ACATTATAGGGTGAC TACGCAGCA TTTC TGCTGCCGA TTTTATATTTTCCAA YPN_3331 3800063 - 3799896 - | hypothetical protein YPN_3332 3800293 - 3800718 + | hypothetical protein TERM 4175 3800754 - 3800769 + T 89 -7.5 -5.05116 | opp_overlap 3800708 3800754 TTTAATGTCAACGAA CCCGC CAATGT GCGGG TTTTGTTATTTCTAA YPN_3333 3801083 - 3800781 - | transposase YPN_3334 3801420 - 3801154 - | hypothetical protein YPN_3335 3801574 - 3802608 + | rhamnose-proton symporter TERM 4176 3802674 - 3802704 + GT 86 -11.3 -3.25896 | gap 1, opp_overlap 3802673, overlap 3802677 TAAAGATGATGATAT TGACGGGCAGCGTT GAAA AAC-CTGCCCGTTA TCTTATGGCTAATCG TERM 4177 3802677 - 3802701 + GT 88 -10.8 -3.76568 | gap 1, opp_overlap 3802673, overlap 3802674 AGATGATGATATTGA CGGGCAGCGTT GAAA AAC-CTGCCCG TTATCTTATGGCTAA YPN_3336 3802583 - 3802732 + | hypothetical protein YPN_3337 3803629 - 3802757 - | transcriptional activator RhaR YPN_3338 3804583 - 3803762 - | transcriptional activator RhaS TERM 4178 3804604 - 3804623 + GH 72 -9.2 -3.10164 | GCCCTCTTTCGACAG GCACGGCG AAAT CGCCCTGC TTCAGTCCTCGATAG YPN_3339 3804569 - 3804709 + | hypothetical protein rhaB 3805010 - 3806467 + | rhamnulokinase YPN_3341 3806464 - 3807720 + | L-rhamnose isomerase TERM 4179 3808211 - 3808198 - g 72 -3.8 -4.88067 | AGTTATGTACAAAAA CTGG AGAACG CCAG CTTCACGCGCCTGTT YPN_3342 3807733 - 3808557 + | rhamnulose-1-phosphate aldolase YPN_3343 3808624 - 3809772 + | alcohol dehydrogenase YPN_3344 3809786 - 3810100 + | hypothetical protein TERM 4180 3810258 - 3810239 - T 100 -15 -3.52073 | opp_overlap 3810237 3810251 TCCTGAATACTAGAA CCGCGCCA TCCG TGGCGCGG CCGTTTAAAGCTAAT YPN_3345 3810859 - 3810311 - | single-strand DNA-binding protein uvrA 3811317 - 3814160 + | excinuclease ABC subunit A TERM 4181 3814199 - 3814165 - T 74 -9.4 -3.35088 | gap 1, overlap 3814168 AAACCGTTTAATGAA CCACTCTGGGGCAAT CAATGT ATTGCTCCAGAG-GG TATGACATTCAGCGT TERM 4182 3814197 - 3814168 - T 77 -10.8 -2.84098 | overlap 3814165 CCGTTTAATGAACCA CTCTGGGGCAAT CAATGT ATTGCTCCAGAG GGTATGACATTCAGC YPN_3347 3814612 - 3814253 - | hypothetical protein YPN_3348 3816332 - 3815139 - | aromatic amino acid aminotransferase alr 3817597 - 3816518 - | alanine racemase TERM 4183 3816814 - 3816804 - G 70 -8.2 -3.727 | GCGATCACACCTAAA CGCG TAT CGCG CTCACTGACCCAGGT TERM 4184 3816971 - 3816991 + g 70 -9.7 -3.28712 | opp_overlap 3816984 CAGCACAATCCCTGG GCGCACC CAATCAC GGTGCGC TTGTGGCCACCGCAG YPN_3350 3819100 - 3817694 - | replicative DNA helicase TERM 4185 3820222 - 3820200 - g 70 -2.6 -4.99134 | overlap 3820201 ATTCTAAACCAAAAA GGGGGGAT CTATGTC ACCCGCCC TTCACTGAATGTCTA YPN_3351 3819432 - 3820415 + | quinone oxidoreductase, NADPH-dependent TERM 4186 3820454 - 3820481 + T 89 -12.7 -2.78395 | opp_overlap 3820454, overlap 3820447 3820446 3820456 3820458 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4187 3820481 - 3820454 - T 100 -14.9 -4.69664 | opp_overlap 3820447 3820446 3820454 3820456 3820458 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4188 3820456 - 3820479 + T 71 -9.5 -2.9296 | opp_overlap 3820454, overlap 3820454 3820447 3820446 3820458 CATGATTGAAAAACA GAGGGCCCC GATTAA GGAGCCCTC TGTCATTACACTTTC TERM 4189 3820557 - 3820573 + T 71 -3 -5.03994 | gap 1, opp_overlap 3820551, overlap 3820558 TCACGTAAATGAACG T-GCCGT TTAT ACGGCTA TTTTTATCTCTAACA TERM 4190 3820558 - 3820571 + T 76 -8.1 -4.14422 | opp_overlap 3820551, overlap 3820557 CACGTAAATGAACGT GCCGT TTAT ACGGC TATTTTTATCTCTAA pspG 3820978 - 3820760 - | phage shock protein G TERM 4191 3821384 - 3821351 - R 100 -15.5 -3.13908 | overlap 3821379 AAGTGAATGAGTGAA CCCCGAATCACTTAC GCCA GTAAATAATTCGGGG GCCCAATTTGCCGAA YPN_3353 3822531 - 3821494 - | tRNA-dihydrouridine synthase A TERM 4192 3822843 - 3822809 - g 95 -12.2 -4.36411 | TATCAATCAGGAAAA GCTGCTCGCACAAGCT GAA AGCCTGTGCCAACAAC GAAACGTCCGGCTGA YPN_3354 3822786 - 3823295 + | zinc uptake transcriptional repressor TERM 4193 3823456 - 3823428 - T 78 -9 -3.88015 | gap 1, opp_overlap 3823432, overlap 3823430 3823432 TAGAGAATCATGAAA TAGAGCCGTACCT CAAC AGGCACGGCT-TA TTATTCTGGGAGGAA TERM 4194 3823455 - 3823430 - T 78 -9.7 -3.51793 | opp_overlap 3823432, overlap 3823428 3823432 GAGAATCATGAAATA GAGCCGTACCT CAAC AGGCACGGCTT ATTATTCTGGGAGGA TERM 4195 3823432 - 3823453 + T 86 -10.1 -4.02817 | opp_overlap 3823430 3823428 3823432 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG TERM 4196 3823453 - 3823432 - T 95 -12.3 -3.32233 | opp_overlap 3823432, overlap 3823430 3823428 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG YPN_3355 3824091 - 3823483 - | LexA repressor YPN_3356 3824587 - 3824216 - | diacylglycerol kinase TERM 4197 3824436 - 3824419 - G 70 -3.3 -4.84642 | TGCAAATTAATAAAA TGCGCGC TATG GCACCCA CATCCAACCAGAAGG TERM 4198 3824673 - 3824663 - H 71 -6.8 -4.18401 | opp_overlap 3824663 CCACAGATCTCAAAA CCAG TTT CTGG TATCCTTGCGACGAA TERM 4199 3824794 - 3824779 - g 76 -6.8 -4.57341 | AATTGTTGGTAAAAA GCAAGG TTAT CCCTGC AGATCCGGTCTCTGA TERM 4200 3825192 - 3825208 + G 70 -3 -4.83169 | gap 1, overlap 3825191 GTATTGTGGTTGGGG CGCGACA GTTT TGT-GCG TTTTTCTACCACCGT YPN_3357 3824715 - 3827192 + | glycerol-3-phosphate acyltransferase TERM 4201 3827239 - 3827219 - T 93 -12.5 -3.0644 | opp_overlap 3827220, overlap 3827210 ACTCAATGCTTAACA GCCCCCTGC CTA GCAGGGGGT TTTCTGAATACCATA TERM 4202 3827220 - 3827238 + T 100 -16 -4.42653 | opp_overlap 3827210 3827219 CTCAATGCTTAACAG CCCCCTGC CTA GCAGGGGG TTTTCTGAATACCAT TERM 4203 3827281 - 3827259 - T 95 -11.3 -3.89291 | opp_overlap 3827259, overlap 3827250 TGAATACCATAACAA TGGCCGGAC TCATT ATCCGGCCA TTTTTTACCATTACC TERM 4204 3827259 - 3827281 + T 100 -10.6 -5.09426 | opp_overlap 3827250 3827259 TGAATACCATAACAA TGGCCGGA CTCATTA TCCGGCCA TTTTTTACCATTACC ubiA 3828239 - 3827373 - | 4-hydroxybenzoate octaprenyltransferase ubiC 3828929 - 3828405 - | chorismate pyruvate lyase TERM 4205 3828997 - 3828985 - H 72 -7.7 -3.87925 | AATTAGTAAACAGAA CGCTA TTG TAGCG CAGAATAGGTACCCG TERM 4206 3829511 - 3829499 - H 70 -2.7 -5.01823 | ACAATAACAAGAAAA TTCCT ACA AAGAA TTAGCCGGGTCTTAT TERM 4207 3830009 - 3829973 - g 76 -8 -4.21933 | overlap 3829975 CGAAGGTGAAAATAA CACCGCGATATCCCTG TTCGG CACGGATATCGCCGTT GAGACCCGGCCAGGT TERM 4208 3830007 - 3829975 - g 80 -10.6 -3.70108 | overlap 3829973 AAGGTGAAAATAACA CCGCGATATCCCTG TTCGG CACGGATATCGCCG TTGAGACCCGGCCAG TERM 4209 3832346 - 3832326 - g 70 -11.1 -2.50816 | overlap 3832325 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YPN_3360 3829761 - 3833570 + | hypothetical protein TERM 4210 3833798 - 3833824 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3833787, overlap 3833793 3833799 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4211 3833799 - 3833825 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3833787, overlap 3833793 3833798 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4212 3833885 - 3833906 + T 74 -10.1 -3.14878 | overlap 3833884 3833888 GGTTTGTCAGCAGTC TGAGGTGCC TCTC GGCACCTCC TGTTGGATTAACGAC TERM 4213 3833888 - 3833903 + T 75 -10.4 -2.77791 | overlap 3833885 3833884 TTGTCAGCAGTCTGA GGTGCC TCTC GGCACC TCCTGTTGGATTAAC YPN_3361 3835971 - 3833914 - | oxidoreductase TERM 4214 3836968 - 3836978 + r 75 -3.2 -5.1471 | overlap 3836914 TAAAATAGCAAGCCA TCTC TTT GGGA TTTATTTTTTCTCGT YPN_3362 3838299 - 3836980 - | hypothetical protein TERM 4215 3837149 - 3837132 - G 70 -8.3 -3.79138 | opp_overlap 3837144, overlap 3837123 3837121 AATACACGCAGCAAA CCCCCTG CTGC CCGGGGG TGAACCCCAGTAAAT TERM 4216 3837822 - 3837806 - G 71 -7.2 -4.07568 | opp_overlap 3837806 TGCCCCGGTGTAAAA CCCCGC AAGTA GCGAGG TGTATGGGTTACCGC TERM 4217 3838120 - 3838140 + g 72 -8.3 -3.88291 | opp_overlap 3838120 TGGGCAATGCGTAAA CGTAATCAG CCC CGGATTACG TTTATCCAGCTCGTC YPN_3363 3839746 - 3839492 - | membrane protein YPN_3364 3840500 - 3839757 - | putative periplasmic chaperone protein YPN_3365 3842950 - 3840572 - | outer membrane fimbrial usher protein TERM 4218 3842616 - 3842604 - G 70 -10.5 -3.02013 | opp_overlap 3842603 AGTTTAACAACCATA CCCGG CCA CCGGG CTTCCATATTCTCAC YPN_3366 3843839 - 3843201 - | hypothetical protein TERM 4219 3844512 - 3844530 + r 86 -10.2 -3.90112 | opp_overlap 3844512 TTGAGCGAAAAAAAA CCCTGCCG ATG CAGCAGGG TTTAATTGAAACGGG TERM 4220 3844530 - 3844512 - R 100 -12.4 -5.81412 | opp_overlap 3844512 TTGAGCGAAAAAAAA CCCTGCCG ATG CAGCAGGG TTTAATTGAAACGGG YPN_3367 3845127 - 3844552 - | tellurium resistance protein TERM 4221 3845180 - 3845156 - R 100 -12.3 -3.61268 | opp_overlap 3845147 3845158 CACTGAAGTGTTAAA TATTCAGAGCA TTT TGCCCTGAATA TATGAATACGTTAAT YPN_3368 3845889 - 3845311 - | tellurium resistance protein YPN_3369 3846990 - 3845953 - | tellurium resistance protein YPN_3370 3847467 - 3847012 - | tellurite resistance protein TERM 4222 3847217 - 3847227 + g 71 -6.8 -4.1552 | GCATCAAATTCATAG CTGG TAA CCAG TTTGTTAAAGAACTC TERM 4223 3847288 - 3847303 + g 83 -3.3 -5.42605 | TTCAGGCGACTGCTT GATGA ACATGA TCATC TTTTGTTTTTCTTCC YPN_3371 3848684 - 3847500 - | tellurite resistance protein TERM 4224 3847561 - 3847575 + g 72 -10 -3.45634 | TCCATTTCTTTGTGT CCGCTA AAA TAGCGG TTAATTCGTTCAACT TERM 4225 3848527 - 3848509 - G 71 -7.4 -4.03234 | CCCTGCCCAGACAAA CGGATGGT GCT ATCATCCG TAACCGGTTGACCAT TERM 4226 3848668 - 3848656 - G 71 -10.5 -3.12327 | overlap 3848654 GTCTGAGACGCAACA GGGGC ATT GCCCC CAGGCATCAGATTCA YPN_3372 3849277 - 3848684 - | tellurium resistance protein TERM 4227 3849755 - 3849740 - g 71 -6.1 -4.3467 | opp_overlap 3849732 3849740 ATCTTGACACCAAAA TGGCG TTTATC CGCCA TATCGTGAAAGCATT TERM 4228 3849989 - 3850004 + G 71 -6 -4.30576 | ATGAATTGCGTGAAT GGCTGG CTAA CCCGCC TTTTGATACTGAAAA YPN_3373 3849553 - 3850614 + | hypothetical protein TERM 4229 3851031 - 3851015 - g 76 -4.3 -4.94058 | CGAATTCAAAGAAAA CCATAGC CAT GCAACGG ATCACCTGCTCTATT YPN_3374 3850626 - 3851762 + | hypothetical protein TERM 4230 3852280 - 3852291 + G 70 -4.4 -4.66938 | CTGGAATCCCTCTTT TCCA CTGA TGGA TTTTATATTCACCGT YPN_3375 3851755 - 3852567 + | hypothetical protein TERM 4231 3852852 - 3852871 + G 73 -12.2 -2.57944 | overlap 3852851 TCGTGCTCGCCAGCT TGGTACGC GCGG GCGTACCA CTTGGTGTGATGCTC YPN_3376 3852560 - 3853639 + | hypothetical protein YPN_3377 3853639 - 3854598 + | ATP/GTP-binding protein YPN_3378 3854995 - 3855483 + | hypothetical protein TERM 4232 3856368 - 3856381 + G 74 -2.3 -5.09521 | opp_overlap 3856369, overlap 3856369 TTTACGCCATCCATA ATGCC ACTT GGCAA TTTTTCATTTATTGA YPN_3379 3855798 - 3856598 + | methylenetetrahydrofolate reductase TERM 4233 3856710 - 3856729 + F 70 -3.5 -4.78981 | opp_overlap 3856692, overlap 3856694 3856711 CCTCACTCTGATGGG TGGGGCT ATATCA ACCCCCA TTTCTTTTGCTTGAT YPN_3380 3856939 - 3858252 + | coproporphyrinogen III oxidase TERM 4234 3858603 - 3858593 - g 71 -5.4 -4.52047 | overlap 3858595 TATCAGAGCACAAAA TTGC CAG GCAA TCGCCCTGCTGGAAC YPN_3381 3858249 - 3858794 + | hypothetical protein YPN_3382 3858828 - 3859478 + | hypothetical protein YPN_3383 3859647 - 3859763 + | hemin uptake protein HEMP YPN_3384 3859893 - 3861923 + | hemin receptor precursor TERM 4235 3861956 - 3861984 + F 82 -10.3 -3.60419 | opp_overlap 3861952 GTCTGAAATCATTCA TCCGGTAATCCAT TTT GTGGCTTGCCGGA TTATCATTTGACAAT YPN_3385 3862042 - 3863079 + | hemin transport protein TERM 4236 3863280 - 3863247 - g 74 -11 -3.11192 | opp_overlap 3863247 3863250 3863252, overlap 3863249 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGCACGC TERM 4237 3863247 - 3863280 + G 78 -13.2 -2.68823 | opp_overlap 3863247 3863249, overlap 3863250 3863252 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGCACGC TERM 4238 3863250 - 3863277 + G 77 -11.3 -3.49618 | opp_overlap 3863249 3863247, overlap 3863247 3863252 AGCACCAGTCAACAG CCTCAGGCAGC GCAAAA GCTGCCTGATG TTGGTTATATGCGCA TERM 4239 3863252 - 3863275 + G 81 -12.5 -3.32023 | opp_overlap 3863249 3863247, overlap 3863250 3863247 CACCAGTCAACAGCC TCAGGCAGC GCAAAA GCTGCCTGA TGTTGGTTATATGCG YPN_3386 3863076 - 3863915 + | hemin-binding periplasmic protein YPN_3387 3863912 - 3864916 + | hemin transport system permease protein HmuU TERM 4240 3865317 - 3865329 + G 83 -9.1 -4.4009 | CTGGCACTGGCACAG CGCGA CTA TCGCG TTTTATCCGGTGGCG YPN_3388 3864909 - 3865709 + | hemin importer ATP-binding subunit TERM 4241 3865749 - 3865737 - T 77 -4.7 -5.0538 | CGCTATGCTAAAAAA CAGCC TAT GGCGG TTCCAAAGCACCAAC YPN_3389 3867031 - 3865850 - | cystathionine beta-lyase YPN_3390 3868363 - 3867077 - | transmembrane transport protein TERM 4242 3868739 - 3868768 + G 74 -10.1 -3.63839 | gap 1, opp_overlap 3868709 3868738 3868736 3868735 3868739 ATTAAAAAGAACCAC TCG-CAGCATCGTT TTA ACCGATGCTGGCGA TTACTTGTTTCATCA YPN_3391 3868533 - 3869516 + | LysR family transcriptional regulator YPN_3392 3869863 - 3869594 - | hypothetical protein YPN_3393 3871074 - 3869860 - | putative inner membrane protein TERM 4243 3870504 - 3870537 + g 70 -2.3 -5.05228 | overlap 3870505 GGCGTGCCGCTCTGG CTGGGTGCTGCGTCA GTGG TGAGGCGGCAGTCAC TTTTTGTAGTTTAAT TERM 4244 3871168 - 3871146 - R 72 -7.8 -3.77489 | opp_overlap 3871149, overlap 3871147 3871149 AAGGTAACAGGGAAA GTAGGCTTAT ATA ATAAGCCTAT TGAGGTTATTGACAA TERM 4245 3871167 - 3871147 - R 81 -11.3 -2.8577 | opp_overlap 3871149, overlap 3871146 3871149 AGGTAACAGGGAAAG TAGGCTTAT ATA ATAAGCCTA TTGAGGTTATTGACA TERM 4246 3871149 - 3871165 + r 72 -9.5 -3.12749 | opp_overlap 3871147 3871146 3871149 GTAACAGGGAAAGTA GGCTTAT ATA ATAAGCC TATTGAGGTTATTGA TERM 4247 3871165 - 3871149 - R 71 -9.5 -2.974 | opp_overlap 3871149, overlap 3871147 3871146 GTAACAGGGAAAGTA GGCTTAT ATA ATAAGCC TATTGAGGTTATTGA TERM 4248 3871246 - 3871272 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 3871235, overlap 3871241 3871247 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4249 3871247 - 3871273 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 3871235, overlap 3871241 3871246 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4250 3871336 - 3871352 + r 76 -9.5 -3.40878 | overlap 3871334 TTGTCAGCAGTCTGA GGCTTAT ATA ATAAGCC TATTATTCACATAAT YPN_3394 3872524 - 3871457 - | secretion system apparatus protein SsaU YPN_3395 3873308 - 3872514 - | type III secretion apparatus protein TERM 4251 3872636 - 3872647 + g 74 -7.2 -4.26076 | opp_overlap 3872636 TCAGTAAGAGAAAAA GCGC CAGT GCGC TTTTAATGGGCATCG TERM 4252 3872647 - 3872636 - G 91 -7.2 -5.1244 | opp_overlap 3872636 TCAGTAAGAGAAAAA GCGC CAGT GCGC TTTTAATGGGCATCG YPN_3396 3873603 - 3873310 - | type III secretion apparatus protein YPN_3397 3874310 - 3873600 - | type III secretion system protein YPN_3398 3875339 - 3874377 - | type III secretion system protein YPN_3399 3875715 - 3875317 - | hypothetical protein TERM 4253 3875383 - 3875395 + g 86 -9.1 -4.54449 | TAACTGATGCAGTTG CCGCT GCC AGCGG TTTTGTATGCGCTGT YPN_3400 3876097 - 3875696 - | type III secretion system apparatus protein YPN_3401 3877440 - 3876094 - | type III secretion system ATPase YPN_3402 3878464 - 3877418 - | secretion system apparatus protein YPN_3403 3879434 - 3878349 - | type III secretion system component TERM 4254 3878534 - 3878515 - GR 83 -3.4 -5.42514 | overlap 3878516 3878517 CGATAAAGTAAAAAA GCCGGAGC CGCA ACCGCGGC CGCCAAAGTGATAAA YPN_3404 3880107 - 3879460 - | type III secretion system apparatus protein YPN_3405 3880700 - 3880104 - | hypothetical protein YPN_3406 3881603 - 3880872 - | type III secretion system apparatus lipoprotein YPN_3407 3881851 - 3881600 - | type III secretion apparatus YPN_3408 3882197 - 3881949 - | type III secretion apparatus YPN_3409 3883039 - 3882419 - | AraC family transcription regulator TERM 4255 3882641 - 3882623 - G 71 -6 -4.386 | overlap 3882625 GAATTTCTCATAAAA CAGGAAAT TCA ATTTCCGG GTCGAAATACCCAAT YPN_3410 3883434 - 3883213 - | type III secretion apparatus YPN_3411 3884667 - 3883453 - | type-III secretion protein YPN_3412 3886186 - 3884669 - | type III secretion protein YPN_3413 3886412 - 3889231 + | two-component sensor/regulator YPN_3414 3889244 - 3889876 + | two-component response regulator TERM 4256 3889973 - 3889945 - T 100 -17.5 -5.38054 | opp_overlap 3889937 GGCGACAAATAAAAA CTCCCCGTCAGTA TGA TGCTGACGGGGAG TGGGTAGATACTATT gltP 3891370 - 3890054 - | glutamate/aspartate:proton symporter TERM 4257 3891961 - 3891945 - H 76 -6.7 -4.43909 | opp_overlap 3891945, overlap 3891942 ATGGTAATAAAACAA CATTTAT TTA ATAAATG TAAATTACTTTAGTC YPN_3416 3892225 - 3894183 + | acetyl-CoA synthetase TERM 4258 3894209 - 3894185 - f 76 -9.4 -3.5525 | gap 1, opp_overlap 3894185 3894186, overlap 3894186 AGACACCGTCGTAAA TTGTGCCGCCT ATAT AGGCGGCA-AA CTTAATTGATGCCTC TERM 4259 3894186 - 3894209 + F 76 -11 -2.64199 | opp_overlap 3894185 3894186, overlap 3894185 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC TERM 4260 3894209 - 3894186 - f 76 -11 -2.72829 | opp_overlap 3894186 3894185, overlap 3894185 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC YPN_3417 3894240 - 3894551 + | hypothetical protein actP 3894548 - 3896203 + | acetate permease TERM 4261 3896236 - 3896223 - T 85 -9.5 -4.1721 | opp_overlap 3896223 ATTTACAGGTTAAAA GGCCC CTAG GGGCC TAGATTGCTGACAAA YPN_3419 3897263 - 3896277 - | hypothetical protein TERM 4262 3897300 - 3897318 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_3420 3897322 - 3898344 + | transposase for insertion sequence IS100 TERM 4263 3898425 - 3898411 - g 77 -11.4 -3.3506 | overlap 3898402 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_3421 3898344 - 3899123 + | transposase/IS protein TERM 4264 3899767 - 3899748 - T 79 -7.8 -4.31859 | overlap 3899745 3899742 CGAACAAAATAATAA GGAGAGGA TGAT CCCTCCCC AATACCCAATATCCG YPN_3422 3900550 - 3899795 - | transposase YPN_3423 3900894 - 3900628 - | helix-turn-helix, Fis-type TERM 4265 3901211 - 3901191 - H 100 -10.4 -4.84527 | opp_overlap 3901191 CGTACACAGCAAAAA CCCCACGC TTTTG GCATGGGG TTATCAGCACAACGC TERM 4266 3901191 - 3901211 + H 71 -8.9 -3.28712 | opp_overlap 3901191 CGTACACAGCAAAAA CCCCACGCT TTT GGCATGGGG TTATCAGCACAACGC TERM 4267 3901257 - 3901277 + H 71 -8.9 -3.35679 | opp_overlap 3901257 CGCACACAGCAAAAA CCCCACGCT TTG GGCATGGGG TTATCAGTACAACGC TERM 4268 3901277 - 3901257 - H 100 -10.4 -4.84527 | opp_overlap 3901257 CGCACACAGCAAAAA CCCCACGC TTTGG GCATGGGG TTATCAGTACAACGC TERM 4269 3901342 - 3901324 - H 100 -8.1 -5.24989 | opp_overlap 3901324 3901316 GCACACAGCAAAAAA CCCACGC TTTGG GCATGGG GTCTTGGCTTTATTT TERM 4270 3901581 - 3901571 - H 74 -6.8 -4.27316 | opp_overlap 3901571 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4271 3902693 - 3902704 + H 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4272 3902740 - 3902766 + H 70 -9.4 -2.75844 | opp_overlap 3902716 3902718, overlap 3902739 3902742 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4273 3903200 - 3903218 + H 82 -10.3 -3.57798 | overlap 3903193 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4274 3904656 - 3904693 + H 78 -5.7 -4.7629 | opp_overlap 3904650 3904656 3904659, overlap 3904659 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 4275 3904659 - 3904690 + H 78 -7.4 -4.47888 | opp_overlap 3904656 3904650 3904659, overlap 3904656 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA YPN_3424 3906941 - 3907141 + | hypothetical protein TERM 4276 3907133 - 3907151 + F 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_3425 3907155 - 3908177 + | transposase for insertion sequence IS100 TERM 4277 3908258 - 3908244 - g 77 -11.4 -3.3506 | overlap 3908235 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_3426 3908177 - 3908956 + | transposase/IS protein YPN_3427 3908972 - 3909907 + | hypothetical protein TERM 4278 3909978 - 3909953 - T 75 -8.9 -3.6284 | AATTAGCACGCTAAA CGCCCTTTTCC CCAA GGCCAAGGGCG TAGCAAGCGAACGTT YPN_3428 3910931 - 3910038 - | LysR family transcriptional regulator YPN_3429 3911193 - 3911897 + | hypothetical protein TERM 4279 3911977 - 3911952 - Tf 100 -11.9 -4.09685 | opp_overlap 3911957 3911958, overlap 3911958 CCCTATCGTGTAAAA CAAAAACCCGC CAAA GCGGGATTTTG TGGCATGAGTGGCGT TERM 4280 3911957 - 3911972 + TF 70 -6 -4.40358 | opp_overlap 3911952 3911958, overlap 3911958 TCGTGTAAAACAAAA ACCCGC CAAA GCGGGA TTTTGTGGCATGAGT TERM 4281 3911958 - 3911971 + TF 72 -9.5 -3.23733 | opp_overlap 3911952 3911958, overlap 3911957 CGTGTAAAACAAAAA CCCGC CAAA GCGGG ATTTTGTGGCATGAG TERM 4282 3911971 - 3911958 - Tf 100 -9.5 -5.45802 | opp_overlap 3911958 3911957, overlap 3911952 CGTGTAAAACAAAAA CCCGC CAAA GCGGG ATTTTGTGGCATGAG TERM 4283 3912090 - 3912065 - Tf 83 -11.9 -2.73124 | opp_overlap 3912070 3912071, overlap 3912071 CCCTATCCTGCAAAG CAAAAACCCGC CGAA GCGGGATTTTG TGGAATGAGTGGCGT TERM 4284 3912070 - 3912085 + TF 70 -6 -4.40358 | opp_overlap 3912065 3912071, overlap 3912071 TCCTGCAAAGCAAAA ACCCGC CGAA GCGGGA TTTTGTGGAATGAGT TERM 4285 3912071 - 3912084 + TF 72 -9.5 -3.23733 | opp_overlap 3912065 3912071, overlap 3912070 CCTGCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4286 3912084 - 3912071 - Tf 100 -9.5 -4.98531 | opp_overlap 3912071 3912070, overlap 3912065 CCTGCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4287 3912203 - 3912178 - Tf 83 -11.9 -2.73124 | opp_overlap 3912183 3912184, overlap 3912184 CCCTATCCTCCAAAG CAAAAACCCGC CGAA GCGGGATTTTG TGGAATGAGTGGCGT TERM 4288 3912183 - 3912198 + TF 70 -6 -4.40358 | opp_overlap 3912178 3912184, overlap 3912184 TCCTCCAAAGCAAAA ACCCGC CGAA GCGGGA TTTTGTGGAATGAGT TERM 4289 3912184 - 3912197 + TF 72 -9.5 -3.23733 | opp_overlap 3912178 3912184, overlap 3912183 CCTCCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4290 3912197 - 3912184 - Tf 100 -9.5 -4.98531 | opp_overlap 3912184 3912183, overlap 3912178 CCTCCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4291 3912316 - 3912291 - Tf 83 -11.9 -2.73124 | opp_overlap 3912296 3912297, overlap 3912297 CCCTATCCTCCAAAG CAAAAACCCGC CGAA GCGGGATTTTG TGGAATGAGTGGAGT TERM 4292 3912296 - 3912311 + TF 70 -6 -4.40358 | opp_overlap 3912291 3912297, overlap 3912297 TCCTCCAAAGCAAAA ACCCGC CGAA GCGGGA TTTTGTGGAATGAGT TERM 4293 3912310 - 3912297 - Tf 100 -9.5 -4.98531 | opp_overlap 3912297 3912296, overlap 3912291 CCTCCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4294 3912297 - 3912310 + TF 72 -9.5 -3.23733 | opp_overlap 3912291 3912297, overlap 3912296 CCTCCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG YPN_3430 3913620 - 3912721 - | putative tetrapyrrole methylase TERM 4295 3912816 - 3912833 + gF 82 -10.5 -3.60762 | overlap 3912818 TGACTCCATGAATTT CTGCCGC TAAT GCGGCGG CTTTTTTCAGCGGTA TERM 4296 3912818 - 3912834 + gF 89 -7.2 -5.02074 | overlap 3912816 ACTCCATGAATTTCT GCCGCT AATGC GGCGGC TTTTTTCAGCGGTAA TERM 4297 3913685 - 3913667 - gH 80 -2.5 -5.42259 | gap 1, opp_overlap 3913667, overlap 3913670 GCATCTTGAAAAAAA CATCACTG GATA CAGT-ATG CTTTCCTCAACGTTC TERM 4298 3914036 - 3914026 - gH 77 -8.2 -4.03995 | opp_overlap 3914028 3914029, overlap 3914027 TCGCGCAGAAAAATA CGCC AGC GGCG GCTGATATTCTTGCC YPN_3431 3913587 - 3915656 + | hypothetical protein TERM 4299 3915820 - 3915854 + G 78 -10 -3.82824 | TCTCGTTTTTCAAGC GGCCAATGTTGCCTTC CGT GGAGGCGAAATTGACC TTATTATGCGTGATG TERM 4300 3915968 - 3916005 + G 71 -7.9 -4.07885 | gap 3, opp_overlap 3915959 3915956 3915960, overlap 3915956 CAACAACGGCTACAT CTGGCCGCCGCTGTT-TG GCTGG CACAAC-GCGGC-GCCAG TTTTGCCACAACATC YPN_3432 3915740 - 3916093 + | hypothetical protein TERM 4301 3916182 - 3916168 - f 77 -5 -5.00642 | opp_overlap 3916168 CAAGCGAGAGAAAAA TTGGTC TGG AACCAA TTTGAACAGCATTTA YPN_3433 3916364 - 3916954 + | DnaA initiator-associating protein DiaA TERM 4302 3917107 - 3917065 - g 85 -7.6 -4.82901 | CGGTTGCCACAAAAA CCGCCACGGATCCACGTACC ATC GGTACGCAGGTAGATGACGG CACACTGGAAGCCAG YPN_3434 3916965 - 3917540 + | hypothetical protein TERM 4303 3917613 - 3917568 - T 71 -6.8 -4.11363 | opp_overlap 3917577, overlap 3917561 AAGAAGATTAAATAA GATTTATCACGGGCTTAGCG CTAAAC CGCCAAGCCCGTTTTTTATC CACCACATCGATACC TERM 4304 3917577 - 3917604 + T 100 -12.7 -5.24129 | opp_overlap 3917568 AAATAAGATTTATCA CGGGCTTAGCG CTAAAC CGCCAAGCCCG TTTTTTATCCACCAC mtgA 3918472 - 3917747 - | monofunctional biosynthetic peptidoglycan transglycosylase YPN_3436 3919122 - 3918469 - | isoprenoid biosynthesis protein TERM 4305 3919343 - 3919366 + r 93 -4.4 -5.81032 | overlap 3919346 TGGCGCAGTCTTCGC GCACCCCGGC CTCG GTCGGGGTTA TTTTTTTTCAACTTC TERM 4306 3919346 - 3919363 + r 100 -10.5 -4.96028 | overlap 3919343 CGCAGTCTTCGCGCA CCCCGGC CTCG GTCGGGG TTATTTTTTTTCAAC YPN_3437 3921700 - 3919364 - | aerobic respiration control sensor protein ArcB YPN_3438 3922908 - 3921964 - | hypothetical protein TERM 4307 3922271 - 3922281 + g 79 -6.8 -4.60924 | opp_overlap 3922266 ATCCCATCAACACCG GTGG TGA CCAC TTTTTCCAAGGTTTC TERM 4308 3924456 - 3924434 - g 70 -9.8 -3.33419 | overlap 3924420 3924432 3924428 ACGGCGAAATCAACA CCATCGCCGG TAA CCGCCAATGG GCCAAGGCGCGTGCC gltB 3923710 - 3928167 + | glutamate synthase subunit alpha TERM 4309 3928329 - 3928294 - g 78 -9.6 -3.89695 | opp_overlap 3928305 3928307 TTCTCAGAAACACAA GCCAAAGCACAGGCCG ATCG CTGCCTGTCCTGCGGC AATCCGTACTGTGAA TERM 4310 3928635 - 3928656 + G 84 -15.1 -2.8632 | overlap 3928628 3928626 TGTGGCCGTGATCGG GGCCGGCCC TGCC GGGCTGGCC TGTGCTGATGTATTA gltD 3928177 - 3929595 + | glutamate synthase subunit beta TERM 4311 3929662 - 3929625 - f 71 -6.9 -4.23647 | opp_overlap 3929624 3929630, overlap 3929626 AAATCATTCAATAAA CGCTAGGGCGGGTTC AATTCACA GAACCCGCCCTTTCT ATTTATTCTATTTAT TERM 4312 3929661 - 3929626 - f 77 -10.4 -3.13104 | opp_overlap 3929624 3929630, overlap 3929625 AATCATTCAATAAAC GCTAGGGCGGGTTC AATTCACA GAACCCGCCCTTTC TATTTATTCTATTTA TERM 4313 3929630 - 3929657 + F 100 -14.2 -4.48483 | opp_overlap 3929626 3929625, overlap 3929624 ATTCAATAAACGCTA GGGCGGGTTC AATTCACA GAACCCGCCC TTTCTATTTATTCTA YPN_3441 3930036 - 3930521 + | hypothetical protein TERM 4314 3930640 - 3930612 - T 70 -5.2 -4.51238 | gap 1, overlap 3930618 CGCACAAAACAGAAA CGATAAGGGCGGC TAAC GCCGCCCTGAA-G AGATAGAGCCTGTAT TERM 4315 3930635 - 3930618 - T 100 -14.1 -3.69613 | overlap 3930612 AAACAGAAACGATAA GGGCGGC TAAC GCCGCCC TGAAGAGATAGAGCC TERM 4316 3930693 - 3930728 + T 76 -9.6 -3.41602 | gap 1, opp_overlap 3930682 TTAACCACGCGTAAT GCCG-GGCGGCCACCAC TCC GTGGCGGTTGCGGCGGC TTATCATCCGGTGAA YPN_3442 3931189 - 3930674 - | ClpXP protease specificity-enhancing factor sspA 3931836 - 3931195 - | stringent starvation protein A TERM 4317 3932173 - 3932157 - R 100 -13.7 -5.64274 | opp_overlap 3932157 TCAGGCATAAAAAAA CCCGGTG AGA CACCGGG TTTTTACCATCAATC TERM 4318 3932157 - 3932173 + r 100 -13.7 -4.62783 | opp_overlap 3932157 TCAGGCATAAAAAAA CCCGGTG AGA CACCGGG TTTTTACCATCAATC rpsI 3932602 - 3932210 - | 30S ribosomal protein S9 rplM 3933045 - 3932617 - | 50S ribosomal protein L13 TERM 4319 3932845 - 3932862 + g 79 -5.5 -4.91712 | CTTGTCTGTACGCTT GTTGCCG GTTA CAGCAAC TTTTTCTGCGTTCAG TERM 4320 3933169 - 3933193 + r 71 -8.8 -3.33162 | opp_overlap 3933173, overlap 3933173 CAATGCTGGCACTAT CAAAGTTTTT GGGAA AAAAACTTTG TTGTAACGTGGGGTC TERM 4321 3933304 - 3933285 - R 81 -11.4 -2.76249 | TAAACATGTTAAGTA CGGACGAC AAAT GTCGCCCG CCATAGAATAGCATT YPN_3446 3934486 - 3933359 - | hypothetical protein TERM 4322 3934685 - 3934674 - H 71 -4.4 -4.7629 | TTATTAAGTGAAAAA GTTC TGCT GAAC AATGAAGTCAAAAAA YPN_3447 3934710 - 3935114 + | cytochrome d ubiquinol oxidase subunit III TERM 4323 3936105 - 3936077 - g 72 -9.7 -3.35992 | gap 1, opp_overlap 3936079 ACTGATCGGAATTAA TACCGCCATCCT TGCGCC AGG-TGGCGGTA ATATCGGTATCGGCT YPN_3448 3935385 - 3936758 + | protease TERM 4324 3936801 - 3936769 - T 95 -11.3 -3.89614 | opp_overlap 3936776, overlap 3936773 3936775 3936776 GCTAATTTGCAGAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 4325 3936797 - 3936773 - T 100 -9.9 -4.55697 | opp_overlap 3936776, overlap 3936769 3936775 3936776 ATTTGCAGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4326 3936795 - 3936775 - T 100 -12.5 -3.88703 | opp_overlap 3936776, overlap 3936773 3936769 3936776 TTGCAGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4327 3936794 - 3936776 - T 100 -16 -2.92499 | opp_overlap 3936776, overlap 3936775 3936773 3936769 TGCAGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4328 3936776 - 3936794 + T 100 -16 -4.8048 | opp_overlap 3936776 3936775 3936773 3936769 TGCAGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_3449 3937333 - 3936875 - | transposase for the IS1541 insertion element TERM 4329 3937464 - 3937446 - H 100 -16 -3.07307 | opp_overlap 3937446 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4330 3937446 - 3937464 + H 100 -16 -4.36914 | opp_overlap 3937446 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4331 3937508 - 3937482 - H 100 -15.2 -4.82901 | overlap 3937483 TTCTGGGCACAAAAA TCGGACACAGCA CGA TGCTGTGTCCGC CTAACTCATGCTATT TERM 4332 3937507 - 3937483 - H 100 -18.7 -3.49419 | overlap 3937482 TCTGGGCACAAAAAT CGGACACAGCA CGA TGCTGTGTCCG CCTAACTCATGCTAT YPN_3450 3937496 - 3938647 + | serine endoprotease TERM 4333 3938744 - 3938768 + T 100 -8.6 -5.27335 | opp_overlap 3938744 TATAAACATAAAAAA TGCCAGCC CCAATCACC GGCTGGCA TTTTTATTTACCGAA TERM 4334 3938768 - 3938744 - T 100 -8.6 -5.59879 | opp_overlap 3938744 TATAAACATAAAAAA TGCCAGCC CCAATCACC GGCTGGCA TTTTTATTTACCGAA YPN_3451 3940090 - 3938828 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPN_3452 3940507 - 3940244 - | BolA-like protein TERM 4335 3940606 - 3940578 - R 84 -6.1 -5.04868 | gap 1, opp_overlap 3940578 TGAAACTAAAGAAAA GCCCCTGTG-AT GCCATT ATGCACAGGAGC TTGATTATCTTACCT YPN_3453 3940947 - 3940645 - | anti-sigma B factor antagonist TERM 4336 3940853 - 3940877 + g 82 -12.2 -3.5764 | opp_overlap 3940866 GCCAGCAAGGTTTCA CGCTGTTGCC AAAGC GGTAACAGCG TTTCACGATCCAGTT YPN_3454 3941606 - 3940983 - | hypothetical protein YPN_3455 3942176 - 3941619 - | hypothetical protein YPN_3456 3942963 - 3942181 - | hypothetical protein YPN_3457 3943999 - 3943181 - | putative ABC transporter ATP-binding protein YrbF TERM 4337 3944666 - 3944676 + G 70 -2.4 -4.9645 | overlap 3944664 GTCATCTTGCTCTTG GCTG CTG CCGC TTTTATTGTTCTGAT YPN_3458 3944264 - 3945238 + | putative calcium/sodium:proton antiporter YPN_3459 3945262 - 3946335 + | D-arabinose 5-phosphate isomerase YPN_3460 3946584 - 3947147 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YPN_3461 3947144 - 3947707 + | hypothetical protein YPN_3462 3947691 - 3948236 + | hypothetical protein YPN_3463 3948243 - 3948968 + | putative ABC transporter ATP-binding protein YhbG TERM 4338 3950205 - 3950215 + G 79 -6.8 -4.62336 | opp_overlap 3950171 3950164 GAAATTCTTGCACAG TCCC CGA GGGA TTTTTGAACTGAAGT YPN_3464 3949030 - 3950463 + | RNA polymerase factor sigma-54 YPN_3465 3950487 - 3950594 + | sigma N modulation factor TERM 4339 3950643 - 3950632 - g 74 -4.4 -4.88646 | AAAAAGTAAAACAAA TTGC AGAA GCAA CGGTACATGTGAATG YPN_3466 3950601 - 3950774 + | hypothetical protein TERM 4340 3950864 - 3950825 - f 100 -21.6 -2.88249 | opp_overlap 3950833 3950863, overlap 3950833 TACACTCGCTACATA GCCAGATACCGGTGGATA TTTA TTCCCACCGGTATCTGGC GTAAACAGCGCTTAA YPN_3467 3950892 - 3951374 + | sugar-specific enzyme IIA component of PTS TERM 4341 3951601 - 3951583 - f 74 -10.3 -2.60496 | overlap 3951582 3951580 TGCGGCTCGAAAGAG GGTGGGT TCCGC ACCCACC ACACCCCGGTTTGTA YPN_3468 3951680 - 3952534 + | hypothetical protein YPN_3469 3952531 - 3952803 + | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) TERM 4342 3953028 - 3953044 + F 100 -13.7 -6.06529 | AACCGATCCTGTAAG GCCCCTC GTT GAGGGGC TTTTTTTTGTCTGTC pyrB 3953141 - 3954076 + | aspartate carbamoyltransferase catalytic subunit YPN_3471 3954085 - 3954552 + | aspartate carbamoyltransferase regulatory subunit YPN_3472 3954690 - 3955076 + | hypothetical protein TERM 4343 3955088 - 3955127 + F 100 -15 -5.05113 | TTAATCCCTCCCCCA TCACCGCATACGGCGGGT TATC GCCAGCCGCATGTGGTGA TTTTATTTCTCTCCG TERM 4344 3955462 - 3955452 - g 79 -6.8 -4.74706 | overlap 3955444 CGCAATAGCCAAAAA TGGC GTC GCCA TCCCATTACCTGATA YPN_3473 3955375 - 3955851 + | hypothetical protein TERM 4345 3955954 - 3955924 - f 88 -7 -5.15634 | opp_overlap 3955924 CACCGCAGTAAAAAA TACCCTAACG GTGAGAAAATT CGTTAGGGTA TTCCTATGCTGCCAG TERM 4346 3956448 - 3956433 - g 70 -9 -3.63073 | opp_overlap 3956430 3956426 CATATTCTGCAACAA CGCCAT GTTG ATGGCG TGATCCTGTTCGGTT treR 3956085 - 3957038 + | trehalose repressor TERM 4347 3957145 - 3957132 - f 79 -6.7 -4.66938 | opp_overlap 3957132, overlap 3957134 ATCTTCAATACAAAA TGGGA ACGT TCCCA TTCCATAAAAATAAA TERM 4348 3957598 - 3957584 - g 76 -7.2 -4.32436 | overlap 3957588 ATAGCATCACCAAAA GAGATT GAA AATCTC TCAATGGTCAAAGGC TERM 4349 3958344 - 3958367 + G 70 -8.8 -3.65143 | overlap 3958342 CGGTGATGACCGGCA GTTTCGCACC GGTC GGTGCGGCAC TATTTGGTTTCCTGT YPN_3475 3957449 - 3958864 + | trehalose(maltose)-specific PTS system components IIBC TERM 4350 3958901 - 3958934 + F 75 -5.9 -4.67353 | gap 1, overlap 3958904 3958905 TCGATATAAGTTGTG TTCTCCCGCCAG-CGG TGA TCGTCTGGCGGGGTCA TTTTTCAATGAATAA TERM 4351 3958904 - 3958931 + F 89 -12 -3.26405 | gap 1, overlap 3958901 3958905 ATATAAGTTGTGTTC TCCCGCCAG-CGG TGA TCGTCTGGCGGGG TCATTTTTCAATGAA TERM 4352 3958905 - 3958930 + F 91 -13.3 -2.55361 | gap 1, overlap 3958904 3958901 TATAAGTTGTGTTCT CCCGCCAG-CGG TGA TCGTCTGGCGGG GTCATTTTTCAATGA TERM 4353 3959612 - 3959626 + G 87 -8.5 -4.84359 | overlap 3959614 CCCTAATGATCTGGA CGGCG ATGGC CGCCG TTTTTATACCGATGG YPN_3476 3958959 - 3960626 + | trehalose-6-phosphate hydrolase TERM 4354 3960711 - 3960745 + F 73 -10 -3.02829 | AGGGCCGGTGATAGG TGACTCCATCAGTGCA AAA TGTCCTGATGGAGCCG TATTCGCAAAATATA TERM 4355 3960910 - 3960942 + F 100 -14.1 -5.30339 | opp_overlap 3960915 CATTAAGCTATTTTC TAACACCCCCTCTCC TAT GGCGTGGGGGTGTTG TTTTTATGTTTTGCT TERM 4356 3960937 - 3960915 - f 76 -10.4 -3.03243 | opp_overlap 3960910 AGCTATTTTCTAACA CCCCCTCTCC TAT GGCGTGGGGG TGTTGTTTTTATGTT TERM 4357 3961045 - 3961058 + G 74 -9.5 -3.54475 | overlap 3961024 GCGTTGCTAGCGCAA CCGGC TTTT GCCGG TTCTGTGGTCGCAAC YPN_3477 3960979 - 3961389 + | nucleoside diphosphate kinase regulator TERM 4358 3961504 - 3961472 - T 100 -15.7 -3.83921 | opp_overlap 3961466 3961476 GGTAATAGAAGATAA TAGAGGGTAACCGCC GCA GGCCATTACCCTCTA TCGCTCACTTTTATA YPN_3478 3962015 - 3961629 - | cytochrome YPN_3479 3962831 - 3962223 - | hypothetical protein TERM 4359 3962380 - 3962367 - G 71 -6.7 -4.24726 | ACAATAAGGGTAAAA CTGAC CAAC GTCAG AATCTAATATAAACA TERM 4360 3963094 - 3963050 - R 70 -5.1 -4.4773 | gap 2, opp_overlap 3963061, overlap 3963061 TCATATCAAGGAAAA GCGCATACAAACTCGCGGGTA TTTTC TACCCGCGAGTT-GTG-GAAC AGTAAGATGACAGGA TERM 4361 3963061 - 3963085 + r 100 -15.8 -3.29511 | opp_overlap 3963061 3963050 AAAAGCGCATACAAA CTCGCGGGTA TTTTC TACCCGCGAG TTGTGGAACAGTAAG TERM 4362 3963085 - 3963061 - R 100 -15.8 -4.08164 | opp_overlap 3963061, overlap 3963050 AAAAGCGCATACAAA CTCGCGGGTA TTTTC TACCCGCGAG TTGTGGAACAGTAAG YPN_3480 3964456 - 3963116 - | peptidase PmbA TERM 4363 3964415 - 3964429 + g 70 -10 -3.3344 | TGCAACAGCTTGTTC CAGCGT TTT ACGCTG TTCTGCAACTTGAGT TERM 4364 3964697 - 3964687 - g 84 -2.4 -5.54907 | CCCAGAAAATAAAAA CGAC GAT GACG ATGAGATTATCTGGG TERM 4365 3964874 - 3964859 - g 78 -2.4 -5.30189 | overlap 3964862 3964863 CAGAAGATCAAAAAA GAAGGC CGCC GCCGCC AGCTCCAGTTAATTG TERM 4366 3964874 - 3964862 - g 70 -4.7 -4.71318 | overlap 3964859 3964863 AAGATCAAAAAAGAA GGCCG CCG CCGCC AGCTCCAGTTAATTG YPN_3481 3964637 - 3965185 + | hypothetical protein TERM 4367 3965227 - 3965180 - T 100 -10.5 -5.75342 | gap 1, opp_overlap 3965182 CTGGCTGAAAAAAAA CAGTAATCGGGCGGG-GCCGGG TCACT CCCGGCTCCCGACTCAATACTG TTGGCGGGCGTAATC TERM 4368 3965182 - 3965225 + T 71 -9.5 -3.02144 | gap 1, opp_overlap 3965180 GGCTGAAAAAAAACA GTAATCGGGCGGG-GCCGGG TCACT CCCGGCTCCCGACTCAATAC TGTTGGCGGGCGTAA YPN_3482 3965578 - 3965297 - | ribonuclease inhibitor YPN_3483 3966056 - 3965583 - | ribonuclease YPN_3484 3966589 - 3966251 - | succinate-semialdehyde dehydrogenase YPN_3485 3967719 - 3966586 - | hypothetical protein TERM 4369 3967483 - 3967502 + g 79 -7.8 -4.56597 | overlap 3967484 3967488 ACGCTGTAAAATCTC TGCTCGCT GTTT AGCGGGCG TTTTTCGCCAGGCAG TERM 4370 3967847 - 3967825 - R 71 -7 -4.22858 | opp_overlap 3967829, overlap 3967829 AGAAGAGAGAAATAA CAAAGACGCC GTG AGCGCCTTTA TGAGGGCTCGAACCG TERM 4371 3967843 - 3967829 - R 75 -5.6 -4.65458 | opp_overlap 3967829, overlap 3967825 GAGAGAAATAACAAA GACGCC GTG AGCGCC TTTATGAGGGCTCGA YPN_3486 3969941 - 3967986 - | p-hydroxybenzoic acid efflux subunit AaeB YPN_3487 3970878 - 3969943 - | p-hydroxybenzoic acid efflux subunit AaeA YPN_3488 3971089 - 3970886 - | hypothetical protein TERM 4372 3971027 - 3971013 - G 86 -5 -5.22768 | ACAACAAAAAACAAA GCCAAT GAA ATTAGC AGCTCAAGAAATATC YPN_3489 3971392 - 3972303 + | putative DNA-binding transcriptional regulator YPN_3490 3972564 - 3973430 + | LysR family transcriptional regulator TERM 4373 3973487 - 3973459 - f 78 -9.1 -3.84185 | CGTAGTTAAATACAA TTTGTTTAACTAA AAT TTAGTTAAACAGA AGATAACAATAAAAA TERM 4374 3976080 - 3976070 - g 83 -5.4 -5.18355 | CTGAAAAATTAAAAA TCCA TCC TGGA ACCATAATTAAAATA YPN_3491 3973666 - 3976167 + | insecticial toxin TERM 4375 3976266 - 3976236 - g 73 -2.7 -4.93877 | gap 1, overlap 3976240 3976244 CTGTATTAAATAAAA TTAACGAATCGCGC CGCG ACGC-ATTGGTTAA CTACTATCTTGCTAA TERM 4376 3978944 - 3978929 - g 70 -4.7 -4.59511 | opp_overlap 3978931 AATATGGCGCAAAAA CAGCT GAATTT AGCTG AGTTAGAGCAAGGCC TERM 4377 3979753 - 3979742 - g 78 -2.2 -5.34309 | ACTAGCAAACAAAAA CTGC TGCT GCAA AGCCTGAGCGACATC YPN_3492 3976208 - 3979801 + | toxin subunit TERM 4378 3979842 - 3979823 - f 83 -11.4 -3.06796 | opp_overlap 3979836, overlap 3979825 3979836 CGTTACCTCAGTCAA CAGGCCCC ACAG AGGGCCTG ATAGGAGAGCCCTTT TERM 4379 3980734 - 3980716 - g 73 -6 -4.5442 | CCGGTAATCATAAAA GGAAAATC CTG GAATTTCC GTCAGGACGCCTTCT YPN_3493 3979858 - 3984348 + | insecticidal toxin complex TERM 4380 3984362 - 3984388 + F 71 -9.4 -2.90941 | opp_overlap 3984354, overlap 3984384 AATATTAGCCGCAGA GCCTAACCGG CCCCTTC CCGGTCAGGC TCTATACCCTGTCAT YPN_3494 3984482 - 3984784 + | hypothetical protein YPN_3495 3984797 - 3985198 + | hypothetical protein YPN_3496 3985186 - 3985554 + | hypothetical protein TERM 4381 3986152 - 3986177 + G 73 -3.1 -4.96848 | opp_overlap 3986145 3986152 ACGAGCAAGCCAAAG GCGGCCTGAAA ACAG TTACCGACCGC TTTTTCTATGCCACA TERM 4382 3988554 - 3988567 + G 71 -6.7 -4.14627 | opp_overlap 3988552 GACATAAAAGCAGCA CGTGA ATAC TCACG TTATTTATATAGCAA YPN_3497 3985638 - 3988595 + | insecticidal toxin TERM 4383 3989017 - 3989042 + G 73 -3.1 -4.96848 | opp_overlap 3989010 3989017 3989029, overlap 3989029 ACGAGCAAGCCAAAG GCGGCCTGAAA ACGG TTACCGACCGC TTTTTCTATGCCACA YPN_3498 3988620 - 3991478 + | insecticidal toxin TERM 4384 3991494 - 3991522 + T 100 -19.1 -2.88861 | opp_overlap 3991494, overlap 3991496 TTTATTAATTTTAAA CACCTTCCCTATT TTG AATAGGGAAGGTG TCTATACCCGTAATA TERM 4385 3991522 - 3991494 - T 100 -19.1 -3.67976 | opp_overlap 3991494 3991496 TTTATTAATTTTAAA CACCTTCCCTATT TTG AATAGGGAAGGTG TCTATACCCGTAATA TERM 4386 3991496 - 3991520 + T 100 -15.9 -2.99471 | opp_overlap 3991494, overlap 3991494 TATTAATTTTAAACA CCTTCCCTATT TTG AATAGGGAAGG TGTCTATACCCGTAA TERM 4387 3991654 - 3991601 - T 73 -10.5 -2.50699 | overlap 3991598 GGTTAACTAATATAC CGATGCTTTGTTGGCACTAAATTTA GTAT CAAATGCAGTGCCAACAAAGCCTAA TACCCATATTGTATT YPN_3499 3993126 - 3991681 - | protease TldD YPN_3500 3994007 - 3993138 - | carbon-nitrogen hydrolase YPN_3501 3997927 - 3994004 - | hypothetical protein TERM 4388 3995459 - 3995480 + g 73 -3 -4.96848 | gap 1 GTTCACCTGAACATG CAGTGG-CA ATGCC TGACCGCTG TTTTTATCTAGCGGC TERM 4389 3996396 - 3996417 + g 80 -10.1 -4.07687 | opp_overlap 3996400 GCATCGGTGGCATCA TACAGGCGG ATGC CCGCCAGTA TTTTCAGCCACGGCT YPN_3502 3999490 - 3998021 - | ribonuclease G YPN_3503 4000079 - 3999480 - | Maf-like protein YPN_3504 4000575 - 4000087 - | rod shape-determining protein MreD YPN_3505 4001567 - 4000572 - | cell wall structural complex MreBCD transmembrane component MreC YPN_3506 4002814 - 4001771 - | rod shape-determining protein MreB TERM 4390 4002582 - 4002567 - G 73 -6 -4.55295 | opp_overlap 4002566 4002568, overlap 4002568 TCCGTGACAAAGAAA TCGGCG ATAA CGCCGT CTTTCATTGGACGAA TERM 4391 4002568 - 4002581 + g 74 -9.5 -3.54146 | opp_overlap 4002568 4002567, overlap 4002566 CCGTGACAAAGAAAT CGGCG ATAA CGCCG TCTTTCATTGGACGA TERM 4392 4002581 - 4002568 - G 70 -9.5 -3.32695 | opp_overlap 4002566 4002568, overlap 4002567 CCGTGACAAAGAAAT CGGCG ATAA CGCCG TCTTTCATTGGACGA TERM 4393 4003149 - 4003159 + r 84 -2.6 -5.63517 | AGGCTAACATGGCCC TATT ACG AATA TTTTTTCTTTCCGGA YPN_3507 4005067 - 4003151 - | regulatory protein CsrD TERM 4394 4004940 - 4004955 + g 76 -5.4 -4.77165 | GCGGTCACAATACTT TGGAGC CGTT GTTCCA TTTTCTTCTGGCACA TERM 4395 4005316 - 4005329 + H 84 -3.8 -5.4433 | CGCTATATTGGCTCA CCCT TAACAC AGGG TTTTTATTTCTGTCT YPN_3508 4005468 - 4006445 + | zinc-binding dehydrogenase TERM 4396 4006549 - 4006517 - f 89 -12 -3.26947 | opp_overlap 4006512 4006511 TAATCGTTACAGCAA CCACCGAGGTCAGT TTCAC ACTTGCCTCGGTGG TAGAAATTTCATATT TERM 4397 4007356 - 4007342 - g 74 -4.2 -4.82901 | opp_overlap 4007355 GCCTGGGCAGAAAAA CCGC TTTATTG GCGG GGGACTGGACTACCC TERM 4398 4007382 - 4007417 + G 74 -7.4 -4.14257 | opp_overlap 4007400 TACCCCTATGTCGAA GGGCTGCGGTTGGATG AAGC CATGCACCCGCTGGCC TTTATGGTTGTTGGC YPN_3509 4006668 - 4007768 + | putative sulfite oxidase subunit YedY YPN_3510 4007768 - 4008388 + | putative sulfite oxidase subunit YedZ YPN_3511 4008651 - 4009103 + | 3-dehydroquinate dehydratase TERM 4399 4009444 - 4009423 - g 80 -12.3 -3.40403 | TTTGCTGCACCACAA CAGCAGCCA GCGC TGGCTGCCG CCGTCGCCCCAGCAC YPN_3512 4009216 - 4009725 + | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YPN_3513 4009737 - 4011086 + | acetyl-CoA carboxylase biotin carboxylase subunit TERM 4400 4011182 - 4011141 - f 79 -10.9 -3.17075 | opp_overlap 4011141 4011142 GGCCGGTTAATTGAA TTGCCCCCCAATATTGGAT AATA ACCTGATATTGGGGGGCAG TTTTTTATGGCATAA TERM 4401 4011141 - 4011182 + F 100 -15.3 -5.26316 | opp_overlap 4011141, overlap 4011142 GGCCGGTTAATTGAA TTGCCCCCCAATATTGGAT AATA ACCTGATATTGGGGGGCAG TTTTTTATGGCATAA TERM 4402 4011142 - 4011181 + F 100 -16.6 -3.75067 | opp_overlap 4011141, overlap 4011141 GCCGGTTAATTGAAT TGCCCCCCAATATTGGAT AATA ACCTGATATTGGGGGGCA GTTTTTTATGGCATA TERM 4403 4011211 - 4011243 + F 86 -12.1 -3.20435 | opp_overlap 4011212, overlap 4011212 AAACTGAAGTTAAAA AGCCTGAATTCTGTA GAG TGCGGAATTCAGGCC TTGATGGCTAATTAA TERM 4404 4011242 - 4011212 - f 100 -11.2 -4.75776 | opp_overlap 4011211 4011212 AACTGAAGTTAAAAA GCCTGAATTCTGTA GAG TGCGGAATTCAGGC CTTGATGGCTAATTA TERM 4405 4011212 - 4011242 + F 100 -15.6 -2.5194 | opp_overlap 4011212, overlap 4011211 AACTGAAGTTAAAAA GCCTGAATTCTGTA GAG TGCGGAATTCAGGC CTTGATGGCTAATTA TERM 4406 4011306 - 4011327 + F 75 -2.3 -5.40004 | overlap 4011307 AGCCGTATATCTTAC CTTCAGTTT ATTT AAGCTGAAA TTTTTTAATTTGCTC YPN_3514 4012444 - 4012686 + | hypothetical protein TERM 4407 4012795 - 4012809 + G 73 -5.6 -4.66938 | ATATTTTATCGGCAA CCGTTC GAT GGGCGG TTTTGTATTGGCGAT panF 4012676 - 4014130 + | sodium/panthothenate symporter TERM 4408 4014189 - 4014158 - f 100 -15.9 -2.77148 | overlap 4014155 4014153 4014151 TCTATCAACACATCA GCCGGTATCGTGG TTATGG CCCCGATACCGGC GCTTGAGAGAATTGC TERM 4409 4014886 - 4014854 - g 77 -9.2 -4.09685 | gap 1, opp_overlap 4014846 CTGTATCTGGCAAAA GACCA-GCCCGCAGA ACTA TCTGCTGACGTGGTC GTGGCCAATATTCTG TERM 4410 4015054 - 4015025 - g 71 -7.2 -3.99324 | GCCTATGAGGATAAA TTCATTCTCGAC CCAGTC GCCGAGAAAGAA GAATGGTGCCGCATT prmA 4014173 - 4015087 + | ribosomal protein L11 methyltransferase TERM 4411 4015128 - 4015103 - f 100 -19.1 -2.52464 | opp_overlap 4015124, overlap 4015090 TTTTGCCTTAACTGA CGCACACGGAC TTGA GTCCGTGTGCG TCACAACTCACCTTT YPN_3517 4015676 - 4016641 + | tRNA-dihydrouridine synthase B fis 4016666 - 4016962 + | DNA-binding protein Fis TERM 4412 4016992 - 4017017 + T 89 -6.8 -5.32882 | opp_overlap 4016992 GGTGTTGTTTAAAAA GGCGTTATCC TTAATT GGTTAGCGCC TTTTTTATAATAATG YPN_3519 4018192 - 4017716 - | hypothetical protein YPN_3520 4018920 - 4018258 - | GntR family transcriptional regulatory protein YPN_3521 4020374 - 4019010 - | metabolite transport protein YPN_3522 4020923 - 4020528 - | gamma carboxymuconolactone decarboxylase YPN_3523 4021991 - 4021101 - | 2-hydroxy-3-oxopropionate reductase YPN_3524 4022868 - 4022056 - | hypothetical protein YPN_3525 4023344 - 4023811 + | outer membrane lipoprotein TERM 4413 4023846 - 4023882 + F 78 -10.3 -3.33162 | gap 1, overlap 4023847 CGTTAACCCCAGTTT TCAGTCTGTAGGC-TG ATAGCC CATGCCTACGGACTGG TTATCAAATGCCGTA TERM 4414 4023847 - 4023881 + F 80 -11.6 -2.59683 | gap 1, overlap 4023846 GTTAACCCCAGTTTT CAGTCTGTAGGC-TG ATAGCC CATGCCTACGGACTG GTTATCAAATGCCGT YPN_3526 4024248 - 4024556 + | major cold shock protein Cspa1 YPN_3527 4024816 - 4025028 + | major cold shock protein Cspa2 TERM 4415 4025133 - 4025109 - T 100 -9.9 -4.47456 | opp_overlap 4025112, overlap 4025111 4025112 ATACCGAATAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4416 4025131 - 4025111 - T 100 -12.5 -3.83566 | opp_overlap 4025112, overlap 4025109 4025112 ACCGAATAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4417 4025112 - 4025130 + T 100 -16 -4.8048 | opp_overlap 4025112 4025111 4025109 CCGAATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4418 4025130 - 4025112 - T 100 -16 -2.89055 | opp_overlap 4025112, overlap 4025111 4025109 CCGAATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_3528 4025669 - 4025211 - | transposase for the IS1541 insertion element TERM 4419 4025800 - 4025782 - H 100 -16 -3.07307 | opp_overlap 4025782 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4420 4025782 - 4025800 + H 100 -16 -4.36914 | opp_overlap 4025782 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4421 4025839 - 4025818 - H 71 -4.4 -4.82901 | opp_overlap 4025821, overlap 4025821 TTCTGGGCACAAAAA GAACCTGC CTCCGT GCAGGTTT TTTTGTGCCTATGAC TERM 4422 4025821 - 4025836 + H 100 -6.1 -5.65177 | opp_overlap 4025818 4025821 TGGGCACAAAAAGAA CCTGC CTCCGT GCAGG TTTTTTTGTGCCTAT TERM 4423 4025836 - 4025821 - H 74 -6.1 -4.52873 | opp_overlap 4025821, overlap 4025818 TGGGCACAAAAAGAA CCTGC CTCCGT GCAGG TTTTTTTGTGCCTAT TERM 4424 4026175 - 4026191 + G 73 -2.9 -4.93296 | overlap 4026174 4026176 TCTTAAAAGTGAGAC TCAGGAC CCT GTGCTGG TTTTTATCGTCATGG TERM 4425 4027192 - 4027177 - g 81 -6.2 -5.04082 | overlap 4027166 CAAAGAACAAGAAAA TGTCTT ATCC AAGACA CTTAACATTCTTGAG YPN_3529 4026074 - 4027249 + | hypothetical protein TERM 4426 4027332 - 4027287 - T 88 -6.8 -5.12707 | opp_overlap 4027287 4027286 TTAAAGCGTAAAAAA CCCGCGCATGGACTGGCC CCATAAAGTT GGACAGTTCATACCCGGG CTTGTCAGGAAAGAT YPN_3530 4028702 - 4027356 - | hypothetical protein TERM 4427 4029329 - 4029347 + G 71 -6.7 -4.1552 | opp_overlap 4029340 CCATTCTGCTTTATT TGGCCGA TAAAT TCGGTCA TTTCTTACCGAAATC TERM 4428 4029413 - 4029434 + G 74 -7.9 -4.20883 | opp_overlap 4029409, overlap 4029400 4029409 TCTGGCTACAAGGTG CAGCCCCTT ATTT AGGGGGCGG TTTTGGGCATTTTTA YPN_3531 4028953 - 4029807 + | putative glutathione S-transferase YghU TERM 4429 4029866 - 4029845 - T 70 -3.6 -4.85599 | CTGACCTGATAAAAA GAACCGGC CTTAGT GCAGGCTC AGAGTGCTGAAAAAA TERM 4430 4029938 - 4029963 + T 86 -9 -4.32857 | gap 1, opp_overlap 4029938 ACTGACATAAAAAAA CACCGC-GCGG CCATA CCGTTGCGGTG TTTCTCTTTCACGCG TERM 4431 4029963 - 4029938 - T 100 -7.5 -5.72616 | gap 1, opp_overlap 4029938 ACTGACATAAAAAAA CACCGC-GCGGC CAT ACCGTTGCGGTG TTTCTCTTTCACGCG YPN_3532 4030602 - 4029997 - | phosphosugar isomerase/binding protein YPN_3533 4032236 - 4030599 - | carbohydrate kinase YPN_3534 4033208 - 4032255 - | ABC transporter, permease protein YPN_3535 4034199 - 4033210 - | branched-chain amino acid transport system, permease component TERM 4432 4034175 - 4034158 - G 71 -5.5 -4.55118 | opp_overlap 4034165 CAACCCGAGATAAAA CTCATGG TGCC CCGTGAG TTGGCGCAGTTTTAG YPN_3536 4035688 - 4034192 - | ABC transporter ATP-binding protein YPN_3537 4036881 - 4035892 - | periplasmic binding protein YPN_3538 4037606 - 4038595 + | lipid A biosynthesis palmitoleoyl acyltransferase TERM 4433 4039369 - 4039337 - g 86 -8.4 -4.74801 | opp_overlap 4039336 4039337 TAATCTGAGCAAAAA GCGGCCATTAACGC GAAAT GCGTTAGTCACCGC CTTTGGTGAACCCAT YPN_3539 4038747 - 4039934 + | hypothetical protein TERM 4434 4040140 - 4040122 - T 100 -12.4 -3.61268 | CATGTAATCGGTAAA CGGGGCCA AAT TAGCCCCG TCCGTAAGATATTAA YPN_3540 4041801 - 4040152 - | putative Na(+)/H(+) exchanger protein TERM 4435 4041998 - 4041962 - R 76 -9.3 -3.45514 | overlap 4041956 4041963 GATATATAACATTAA GTTCACATCGGGGAGGA TAA TCCCCCCCGATGCCTGC AACCAATTGTTATTA YPN_3541 4043505 - 4042150 - | xanthine/uracil permease TERM 4436 4042604 - 4042581 - G 70 -4.6 -4.64657 | gap 1, opp_overlap 4042602, overlap 4042583 CCAAACCCGCAAAAA TG-CTACTGAC GGA GTCAGTGGTCA GCGCTTTACCACCGC TERM 4437 4043333 - 4043320 - G 72 -8.1 -3.86346 | opp_overlap 4043327, overlap 4043322 GCAGGTCGCGACAAA CACCG CCGT CGGTG GGAAACCGGCTTTGC TERM 4438 4043847 - 4043888 + H 88 -11.1 -3.75015 | gap 1, opp_overlap 4043841 4043850 4043852, overlap 4043851 GAATAAACATCGCTC AAACACCTTATTGTAGCTAC ATC GTAGCTACAATAAGG-GTAA TTTAATGGAGGTTAT TERM 4439 4043885 - 4043850 - H 100 -17.2 -3.58329 | gap 1, opp_overlap 4043847 4043851, overlap 4043841 4043852 TAAACATCGCTCAAA CACCTTATTGTAGCTAC ATC GTAGCTACAATAAGG-G TAATTTAATGGAGGT TERM 4440 4043851 - 4043885 + H 100 -17.4 -2.96873 | opp_overlap 4043850 4043841 4043852, overlap 4043847 AAACATCGCTCAAAC ACCTTATTGTAGCTAC ATC GTAGCTACAATAAGGG TAATTTAATGGAGGT TERM 4441 4043884 - 4043852 - H 100 -20.9 -3.36341 | opp_overlap 4043851 4043847, overlap 4043850 4043841 AACATCGCTCAAACA CCTTATTGTAGCTAC ATC GTAGCTACAATAAGG GTAATTTAATGGAGG YPN_3542 4043959 - 4044162 + | DNA-damage-inducible protein TERM 4442 4044218 - 4044201 - T 70 -2.7 -5.00884 | AGCCGCTTTAAAAAA GATGCAA AGCG TTACACC AAGAATAAAAAGGCG TERM 4443 4044327 - 4044301 - T 84 -10.1 -3.74872 | gap 1, opp_overlap 4044310, overlap 4044302 4044317 AGGCAGGGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4444 4044328 - 4044302 - T 72 -10.1 -2.84602 | gap 1, opp_overlap 4044310, overlap 4044301 4044317 GGCAGGGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT ssuB 4045596 - 4044781 - | aliphatic sulfonates transport ATP-binding subunit TERM 4445 4045163 - 4045139 - G 95 -11.3 -4.57882 | TCCAACAACAATAAA CGGGGGCGATG GAT CAGCGCCCGCG CCAGTGCAACACGTT YPN_3544 4046390 - 4045593 - | aliphatic sulfonates transport permease protein YPN_3545 4047547 - 4046399 - | alkanesulfonate monooxygenase YPN_3546 4048702 - 4047566 - | alkanesulfonate transporter substrate-binding subunit YPN_3547 4049298 - 4048717 - | NAD(P)H-dependent FMN reductase YPN_3548 4049769 - 4050470 + | deoxyribose-phosphate aldolase TERM 4446 4050798 - 4050818 + G 82 -11.9 -3.58536 | GAGGTCGCCTATGCG GGTGTCGTC GGT GATGACACC TTTGGCCATGAATTT YPN_3549 4050627 - 4051556 + | carbohydrate kinase YPN_3550 4051562 - 4052065 + | carbohydrate transport protein YPN_3551 4053105 - 4052227 - | AraC family transcription regulator YPN_3552 4053363 - 4054493 + | oxidoreductase YPN_3553 4054490 - 4055389 + | hypothetical protein TERM 4447 4055449 - 4055427 - T 100 -4 -6.14618 | opp_overlap 4055428, overlap 4055428 TATAAAACAAAAAAA TGTGGCTGGC TAA ACCAGTCACT TTGTATCACTAAAAA TERM 4448 4055428 - 4055448 + T 80 -9 -4.0641 | opp_overlap 4055428 4055427 ATAAAACAAAAAAAT GTGGCTGG CTAAA CCAGTCAC TTTGTATCACTAAAA TERM 4449 4055448 - 4055428 - T 75 -7.5 -4.25111 | opp_overlap 4055428, overlap 4055427 ATAAAACAAAAAAAT GTGGCTGGC TAA ACCAGTCAC TTTGTATCACTAAAA TERM 4450 4055731 - 4055697 - T 100 -14.4 -5.14563 | opp_overlap 4055700, overlap 4055700 CTGGCGATCAAAAAA CAACCGGGAAGATCTT CTT AGGATCTTCCCGGTTT TTATTTATGGCAGTT TERM 4451 4055728 - 4055700 - T 100 -16.1 -4.67552 | opp_overlap 4055700, overlap 4055697 GCGATCAAAAAACAA CCGGGAAGATCTT CTT AGGATCTTCCCGG TTTTTATTTATGGCA TERM 4452 4055700 - 4055728 + T 100 -18.3 -5.38054 | opp_overlap 4055697 4055700 GCGATCAAAAAACAA CCGGGAAGATCTT CTT AGGATCTTCCCGG TTTTTATTTATGGCA YPN_3554 4056530 - 4055736 - | hypothetical protein YPN_3555 4061077 - 4056539 - | membrane protein TERM 4453 4057606 - 4057618 + g 70 -4.7 -4.69027 | overlap 4057587 4057610 AGCGCCACAGCTGTG GCCGG TAG CCGTC TTTTTGGCTGCGTTT TERM 4454 4060982 - 4061010 + g 77 -10.2 -3.62096 | opp_overlap 4060977, overlap 4060980 GACCTGATAATCCGT CCGCGCCGGG CTCTGTTGC CCCAGCGCGG TTTGACGTAATGCCG YPN_3556 4061544 - 4061122 - | hypothetical protein YPN_3557 4063745 - 4061547 - | Rhs accessory genetic element TERM 4455 4061779 - 4061758 - G 73 -5.1 -4.65916 | gap 1, opp_overlap 4061758, overlap 4061760 TTCACCTGAATAAAA TTCG-CGCAG GTA CTGCGACGCA CTTTGATCGTCTCGG YPN_3558 4063943 - 4063767 - | hypothetical protein TERM 4456 4063853 - 4063865 + g 75 -10.5 -3.39449 | opp_overlap 4063851 4063853 TTTGTTTTATCAAGA CCGGC GAG GCCGG TTGATGTTCATCGGC TERM 4457 4063865 - 4063853 - G 71 -10.5 -3.13403 | opp_overlap 4063853, overlap 4063851 TTTGTTTTATCAAGA CCGGC GAG GCCGG TTGATGTTCATCGGC TERM 4458 4064239 - 4064207 - g 70 -2.6 -4.95843 | opp_overlap 4064211 ACATAAAACACAAAA GGAAGTCGCGACCC GTATT GGCTTGCAACTTTC ACAGTACAATAAATA YPN_3559 4064106 - 4064513 + | transcriptional regulatory protein TERM 4459 4064564 - 4064533 - f 93 -12.3 -3.0752 | overlap 4064535 CACAGTATTTTAACA CAGGGTTGAGGTG TATCAG CACCTCAGCCCCG CTAACCACAAGCAAC TERM 4460 4064562 - 4064535 - f 84 -11.3 -3.09289 | overlap 4064533 CAGTATTTTAACACA GGGTTGAGGTG TATCAG CACCTCAGCCC CGCTAACCACAAGCA YPN_3560 4064595 - 4064819 + | hypothetical protein YPN_3561 4064895 - 4065086 + | hypothetical protein TERM 4461 4065118 - 4065096 - T 72 -9.2 -3.19175 | TTGTAATATATTCAA GGAGGATC CAACAAT GATCCTCC CCATACGCTTACATG YPN_3562 4065621 - 4065136 - | hypothetical protein YPN_3563 4066993 - 4065623 - | hypothetical protein YPN_3564 4069885 - 4067021 - | hypothetical protein TERM 4462 4067877 - 4067904 + g 70 -10.6 -2.93348 | GAATGGTTTTCAGCA TCGATGACCGTC AGCA GATGGCCATCGA TATCATATTCGTAGC TERM 4463 4069742 - 4069727 - G 74 -6.8 -4.34488 | overlap 4069729 CATACCCACAATAAA GCCGGT AGCG ACCAGC GTCGCCCCGCCGGTG YPN_3565 4070336 - 4069878 - | hypothetical protein YPN_3566 4072744 - 4070342 - | Rhs accessory genetic element YPN_3567 4073389 - 4072766 - | hypothetical protein TERM 4464 4072852 - 4072864 + gr 78 -10.5 -3.39449 | opp_overlap 4072850 4072852 TTTGTTTTATCAAGA CCGGC GAG GCCGG TTGATGTTCATCGGC TERM 4465 4072864 - 4072852 - GR 77 -10.5 -3.13403 | opp_overlap 4072852, overlap 4072850 TTTGTTTTATCAAGA CCGGC GAG GCCGG TTGATGTTCATCGGC YPN_3568 4074078 - 4073296 - | hypothetical protein TERM 4466 4073847 - 4073857 + gr 80 -2.4 -5.47218 | opp_overlap 4073847 AGCCCTCGGTGAAAC CGGC CAG GCCA TTTTTTTGGGTGCGG TERM 4467 4073957 - 4073984 + gr 70 -3.4 -4.77983 | gap 1, overlap 4073961 4073963 TCAATCAAACCCCAG TTGACC-TCTGGC CGT GCCGGGTGGTTGA TTTTGTTGATCTCTT YPN_3569 4077736 - 4074203 - | hypothetical protein TERM 4468 4075052 - 4075070 + g 79 -8.8 -4.18018 | overlap 4075053 CGCCTTCAACGCCGC TTTGCCCG GCG CGGGCGAG TTTTGGATCGCCAAC TERM 4469 4076369 - 4076394 + g 86 -6.9 -5.00616 | CAGGGCACCCACCCC CGAGAAAATGA ACAT TCGCTTTCTCG TTTTTTGCAGCCAGA TERM 4470 4077681 - 4077659 - G 81 -12.8 -3.23711 | opp_overlap 4077658 4077659, overlap 4077651 CGCACAAGCCATCAA CGCCAATACC ACC GGTATTGACG CTTTAAGGCGAGGAA YPN_3570 4079156 - 4077768 - | hypothetical protein YPN_3571 4079848 - 4079162 - | hypothetical protein YPN_3572 4080642 - 4079845 - | hypothetical protein TERM 4471 4079909 - 4079921 + g 73 -6.2 -4.54821 | GATAGCCCCAAACTG GCCG CAATA CGGC TTTTGTCGTTACCGT YPN_3573 4083242 - 4080639 - | Clp ATPase TERM 4472 4080696 - 4080722 + g 74 -8.6 -4.08706 | overlap 4080692 TACCGCGATCCGAAT GTGGCTGATAGC GGT GCCAGCGGCCAC TTTCTGTAATAACAA TERM 4473 4082482 - 4082492 + g 70 -3.2 -4.83615 | AGCGTCATCAACTCG CTGT TAC GCAG TTTTTCTGGCACCTG YPN_3574 4084020 - 4083253 - | membrane protein YPN_3575 4085366 - 4084020 - | hypothetical protein YPN_3576 4085914 - 4085369 - | lipoprotein YPN_3577 4087230 - 4085914 - | hypothetical protein TERM 4474 4087207 - 4087218 + g 78 -2.2 -5.28778 | overlap 4087201 GACGACCCGCAATGA CAGC GTTG GTTG TTTTTTATCCATGGT YPN_3578 4088444 - 4087356 - | hypothetical protein YPN_3579 4089151 - 4088408 - | hypothetical protein TERM 4475 4089151 - 4089197 + Gg 89 -15.4 -3.05384 | gap 1, opp_overlap 4089156, overlap 4089156 4089161 CATGACCCCGGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4476 4089191 - 4089156 - gH 93 -12.7 -3.05384 | opp_overlap 4089151 4089156 4089161 CCCCGGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4477 4089156 - 4089192 + GH 77 -10.3 -3.19192 | gap 1, opp_overlap 4089156, overlap 4089151 4089161 CCCCGGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4478 4089161 - 4089171 + GH 76 -5.4 -4.88736 | opp_overlap 4089156, overlap 4089156 4089151 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPN_3580 4089070 - 4089717 + | insertion element IS1661 DNA-binding protein TERM 4479 4090537 - 4090519 - g 71 -11 -2.73735 | overlap 4090509 4090507 4090530 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPN_3581 4089771 - 4090556 + | transposase for insertion sequence IS1661 TERM 4480 4090613 - 4090591 - T 71 -9 -3.32844 | GGGTTCAGTGCATAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG YPN_3582 4091342 - 4090911 - | hypothetical protein TERM 4481 4091329 - 4091353 + g 74 -7.9 -4.22524 | GAAACACGGTCACTA CGCGAGAAAAA CAA TTTTATTCGCG TTTCATTTTAACTAT YPN_3583 4091809 - 4091345 - | membrane protein YPN_3584 4092492 - 4092118 - | hypothetical protein TERM 4482 4093600 - 4093581 - g 72 -8.6 -3.90291 | gap 1, opp_overlap 4093598 ATCCGCCTAATTAAA GGCAGCCAC ATT GTGG-TGCC TCGGGTTCATAACCA TERM 4483 4094053 - 4094038 - g 71 -6.8 -4.2558 | gap 1 CAGCGTGGACTAAAA CCGGTGC CTT GC-CCGG TGGGGATATCGGCGG TERM 4484 4094393 - 4094379 - g 70 -4.2 -4.70659 | opp_overlap 4094382 GCGCACACTGAAAAA CAACAG GCG CTGCCG CTGGTTTCTTAATAG glpD 4092891 - 4094405 + | glycerol-3-phosphate dehydrogenase TERM 4485 4094523 - 4094494 - T 78 -5.8 -4.86939 | gap 2, opp_overlap 4094494 CAAGAAATTTAAAAA CCCTCTTCAATCGG ATAA CCG-C-GAAGAGGG TTTTTTACGGTGGCA TERM 4486 4094494 - 4094523 + T 73 -3.6 -5.0538 | gap 2, opp_overlap 4094494 CAAGAAATTTAAAAA CCCTCTTCAATCGG ATAA CCGC--GAAGAGGG TTTTTTACGGTGGCA YPN_3586 4097015 - 4094568 - | glycogen phosphorylase TERM 4487 4095245 - 4095235 - G 72 -8.2 -3.84406 | opp_overlap 4095235 TTGGCATTATAATAA GCCG AGG CGGC TTTACCGGCAAAAAT TERM 4488 4095597 - 4095622 + g 100 -11.1 -4.63218 | opp_overlap 4095600, overlap 4095575 GTTGGCTAACCCCAA CCAGCGCCGTG GTGT CACGCCGTTGG TTTTATTGCAGAAAC glgA 4098614 - 4097184 - | glycogen synthase glgC 4100112 - 4098682 - | glucose-1-phosphate adenylyltransferase YPN_3589 4102110 - 4100122 - | glycogen debranching enzyme TERM 4489 4100222 - 4100206 - G 74 -10.1 -3.63627 | GTCTGACACCCCAAA GGGAGGA ATC CCCTCCC ATTCCCCTTCAGGTA YPN_3590 4104295 - 4102112 - | glycogen branching enzyme YPN_3591 4104801 - 4106498 + | membrane protein TERM 4490 4106604 - 4106571 - T 75 -5.4 -4.90296 | opp_overlap 4106569 4106572 4106575, overlap 4106572 4106575 AAAACCCTATAAAAA TTAATGCCAGAG TATAACCCAC CTCTGGCATTAC TATTATTCCTGACAC TERM 4491 4106603 - 4106572 - T 73 -8.9 -3.52551 | opp_overlap 4106572 4106569 4106575, overlap 4106571 4106575 AAACCCTATAAAAAT TAATGCCAGAG TATAACCCAC CTCTGGCATTA CTATTATTCCTGACA YPN_3592 4119518 - 4106706 - | invasin TERM 4492 4111665 - 4111644 - G 72 -8 -3.90112 | GTTGGCCGAACTAAA GACCACCG CAGCAC CGGTGATC GGGTTGCCGTTAGCA TERM 4493 4112532 - 4112511 - G 72 -8 -3.90112 | GTTGGCCGAACTAAA GACCACCG CAGCAC CGGTGATC GGGTTGCCGTTAGCA TERM 4494 4116303 - 4116282 - G 72 -8 -3.90112 | GTTGGCCGAACTAAA GACCACCG CAGCAC CGGTGATC GGGTTGCCGTTAGCA TERM 4495 4120435 - 4120419 - H 75 -3.1 -5.08824 | TCTTCACGCAAAAAA TAAAAAA CCA TTTTCTA TACGGCATTCAATTT TERM 4496 4120764 - 4120745 - H 100 -10 -5.63645 | opp_overlap 4120743 4120738 4120745 TTAAAATATAAAAAA CCCTGACC ATAA GATCAGGG TGCTTTGTTGTTCTT YPN_3593 4120822 - 4121163 + | hypothetical protein YPN_3594 4121541 - 4121254 - | hypothetical protein YPN_3595 4121922 - 4121548 - | hypothetical protein YPN_3596 4122444 - 4122163 - | hypothetical protein TERM 4497 4122571 - 4122554 - R 100 -9.8 -4.60949 | CATACGATAAACAAA GCCCGC ACTCTG GCGGGC TTACGGGTCTTCCAC YPN_3597 4123716 - 4122613 - | aspartate-semialdehyde dehydrogenase TERM 4498 4124090 - 4124106 + G 79 -5.1 -4.93968 | overlap 4124092 TGACTGAGATGATTG CAGCAAC TGT GTTGCTA TTTTTAATTATGGAT TERM 4499 4124092 - 4124104 + G 71 -7.7 -4.08682 | overlap 4124090 ACTGAGATGATTGCA GCAAC TGT GTTGC TATTTTTAATTATGG YPN_3598 4124074 - 4124667 + | dITP- and XTP- hydrolyzing protein TERM 4500 4124752 - 4124738 - T 80 -2.8 -5.47399 | opp_overlap 4124738, overlap 4124751 TCAACGTCAAAAAAA CCAATT CAA AATGGG TCTTTGACTGCTGAC TERM 4501 4124884 - 4124897 + T 79 -8.1 -4.3534 | opp_overlap 4124878 TGTCAATAACCTCAA GCCTC TTCT GAGGC TTTTAATAATTAGAC YPN_3599 4125296 - 4124907 - | hypothetical protein TERM 4502 4124934 - 4124944 + g 80 -3.2 -5.3671 | ATCATCAGGGTAAGC GGCT TTG AGTC TTTTTTGCTTGTCTT YPN_3600 4125685 - 4125518 - | adhesin/hemolysin YPN_3601 4125915 - 4125682 - | hypothetical protein YPN_3602 4126600 - 4126097 - | gluconokinase YPN_3603 4126817 - 4128133 + | gluconate permease YPN_3604 4129220 - 4128225 - | gluconate utilization system Gnt-I transcriptional repressor TERM 4503 4129271 - 4129294 + r 100 -8.2 -4.87291 | gap 1, opp_overlap 4129266 4129271 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA TERM 4504 4129294 - 4129271 - R 82 -6 -4.93877 | gap 1, opp_overlap 4129271, overlap 4129266 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA YPN_3605 4130044 - 4129349 - | hypothetical protein YPN_3606 4130397 - 4130173 - | hypothetical protein TERM 4505 4130285 - 4130269 - G 100 -9.4 -6.17292 | AAAGGCAAAAAAAAA GCCAGC ACCCG GCTGGC TAAGTAAACACTGGA YPN_3607 4130808 - 4131545 + | response regulator protein YPN_3608 4132737 - 4131730 - | PfkB family carbohydrate kinase TERM 4506 4132262 - 4132245 - G 76 -12.7 -2.62933 | overlap 4132233 CAAGCTGCGACATCA GCGCCAG TAGT CTGGCGC TACGAGTACCGTACT YPN_3609 4133607 - 4132747 - | hypothetical protein YPN_3610 4134316 - 4133633 - | hypothetical protein YPN_3611 4135335 - 4134391 - | sugar-binding transport protein YPN_3612 4136358 - 4135366 - | sugar transport system permease protein TERM 4507 4136316 - 4136291 - G 77 -9.9 -3.72695 | opp_overlap 4136310, overlap 4136302 ACGGTTTGCAGTAAA TCGCTAAAAAA CGCT TTTTTCAGCGA GGCCGATTTTGCCAC TERM 4508 4136315 - 4136302 - G 78 -3.8 -5.07107 | opp_overlap 4136310, overlap 4136291 TAAATCGCTAAAAAA CGCT TTTTTC AGCG AGGCCGATTTTGCCA YPN_3613 4137874 - 4136351 - | sugar transport ATP-binding protein TERM 4509 4138222 - 4138200 - g 71 -6.3 -4.37658 | gap 1 AAGCCGCTTACAAAA GCAG-GTCCA GGAG CGGACACTGC GCGATATGTCAAGCA YPN_3614 4138063 - 4140618 + | hybrid two-component system regulatory protein YPN_3615 4142136 - 4140754 - | hypothetical protein TERM 4510 4141649 - 4141661 + g 76 -3.3 -5.14563 | opp_overlap 4141650, overlap 4141650 GAATCATCACAAAAA AGCTG CCC CAGCG TTTTTTCATGCCAGG TERM 4511 4141660 - 4141650 - G 100 -6.8 -5.33785 | opp_overlap 4141649 4141650 AATCATCACAAAAAA GCTG CCC CAGC GTTTTTTCATGCCAG YPN_3616 4142162 - 4143757 + | phosphate transport protein TERM 4512 4143853 - 4143873 + F 100 -10.4 -5.24129 | opp_overlap 4143853 GATGAGCAATAAAAA GGCGGCCT AAATC AGGTCGCC TTTTTTGTGCCCAGA TERM 4513 4143873 - 4143853 - f 100 -8.9 -5.15167 | opp_overlap 4143853 GATGAGCAATAAAAA GGCGGCCTA AAT CAGGTCGCC TTTTTTGTGCCCAGA TERM 4514 4143910 - 4143892 - f 100 -16 -4.36914 | opp_overlap 4143892 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4515 4143892 - 4143910 + F 100 -16 -3.07307 | opp_overlap 4143892 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_3617 4144023 - 4144481 + | transposase for the IS1541 insertion element TERM 4516 4144559 - 4144583 + T 100 -9.9 -4.43642 | opp_overlap 4144562, overlap 4144561 4144562 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTAATTCTTTT TERM 4517 4144561 - 4144581 + T 100 -12.5 -3.78931 | opp_overlap 4144562, overlap 4144559 4144562 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTAATTCTT TERM 4518 4144580 - 4144562 - T 100 -16 -4.8048 | opp_overlap 4144562 4144561 4144559 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAATTCT TERM 4519 4144562 - 4144580 + T 100 -16 -2.85732 | opp_overlap 4144562, overlap 4144561 4144559 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAATTCT YPN_3618 4144949 - 4144614 - | universal stress protein UspB YPN_3619 4145657 - 4146103 + | universal stress protein A TERM 4520 4146131 - 4146151 + F 100 -11.8 -4.91109 | opp_overlap 4146131 TTGAGTAACGTTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4521 4146151 - 4146131 - f 78 -9.6 -3.67976 | opp_overlap 4146131 TTGAGTAACGTTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4522 4146916 - 4146904 - g 74 -4.9 -4.77036 | TGGCATGATGAAAAA GTTAT CCA ATAAC ACCGCTTGCGTCTTT YPN_3620 4146350 - 4147693 + | glutamate dehydrogenase YPN_3621 4147947 - 4149275 + | metalloprotease TERM 4523 4149350 - 4149335 - T 70 -6 -4.37092 | overlap 4149336 ATTCGGGTGAGAAAA TGCCGC TAAC GCGGCG GCGTCACCGATGAAG TERM 4524 4149349 - 4149336 - T 72 -9.5 -3.21934 | overlap 4149335 TTCGGGTGAGAAAAT GCCGC TAAC GCGGC GGCGTCACCGATGAA YPN_3622 4150110 - 4149340 - | putative methyltransferase TERM 4525 4150057 - 4150074 + g 82 -14.1 -2.74012 | opp_overlap 4150057 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA TERM 4526 4150074 - 4150057 - G 93 -14.1 -3.7319 | opp_overlap 4150057 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA YPN_3623 4152156 - 4150114 - | oligopeptidase A YPN_3624 4152302 - 4152457 + | hypothetical protein TERM 4527 4153006 - 4152996 - g 71 -5.4 -4.58773 | CGTATGAAATGAAAA CTGA TTA TCAG GATGTGGTGAAAGGT YPN_3625 4152485 - 4153327 + | hypothetical protein TERM 4528 4154233 - 4154223 - g 70 -4.6 -4.7254 | overlap 4154209 4154224 4154225 AGCGGTTATCAAAAA CGCC GAT GGCA GCCTGACGCTGCAAT TERM 4529 4154459 - 4154471 + G 82 -10.5 -3.86524 | overlap 4154470 CCCCGGTTGCCGTTG CGGCG GGC CGCCG TTTGTCCGAACGTCT YPN_3626 4153498 - 4154865 + | glutathione reductase TERM 4530 4154875 - 4154912 + F 95 -11.3 -3.89524 | gap 1, opp_overlap 4154866, overlap 4154877 AGATGATTTCGTTAC TATGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCATG TTTCTGAAATACACT TERM 4531 4154877 - 4154910 + F 89 -11.7 -3.53733 | gap 1, opp_overlap 4154866, overlap 4154875 ATGATTTCGTTACTA TGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCA TGTTTCTGAAATACA TERM 4532 4154930 - 4154956 + F 75 -5.9 -4.70583 | opp_overlap 4154930 TCTGAAATACACTAA GCCAGGTTG AAAATGAGC TAACCTGGC TTTTATCTTAATAGA TERM 4533 4155745 - 4155760 + G 71 -6 -4.36262 | opp_overlap 4155739, overlap 4155744 TGCGCAAATTGTATG CGCTGC TACA GCCGCG TTTTAGTCTGAATAT YPN_3627 4155057 - 4156184 + | regulatory protein YPN_3628 4156389 - 4156147 - | hypothetical protein TERM 4534 4157025 - 4157044 + GH 70 -9.2 -2.79679 | opp_overlap 4157035, overlap 4157033 4157035 GCGCTGCCTGCCTTT GGTGCAGC AATG GCGGCACC TCTGGTCGCCATCTT TERM 4535 4157374 - 4157391 + GH 71 -8.4 -3.40597 | opp_overlap 4157365, overlap 4157365 4157362 4157361 4157372 CAACCACGGCGGGCA CCGCAG TCGCTT CTGCGG TATTTAGCTCAACGC YPN_3629 4156362 - 4157630 + | GntP family permease YPN_3630 4157641 - 4158777 + | glycerate kinase TERM 4536 4158913 - 4158882 - T 70 -7.2 -3.74872 | opp_overlap 4158880 4158909, overlap 4158884 AGGGACTTTATCAAA TACCGACGGTCAGA TATC TCTGGCCGTTGGGA CATCCTATTTTCCAC TERM 4537 4158911 - 4158884 - T 78 -9.8 -3.4582 | opp_overlap 4158880 4158909, overlap 4158882 GGACTTTATCAAATA CCGACGGTCAGA TATC TCTGGCCGTTGG GACATCCTATTTTCC YPN_3631 4159529 - 4159023 - | hypothetical protein TERM 4538 4159317 - 4159327 + g 74 -2.6 -5.093 | opp_overlap 4159311 AACACCATATTTTTC TTTT AAA AAAA TTTTGTTATTTTCCC YPN_3632 4160094 - 4159597 - | hypothetical protein TERM 4539 4160083 - 4160093 + g 82 -4 -5.24291 | TAAGATATTGTATTT TGTT TTT AACA TTTTATTTTCGTTTT YPN_3633 4160965 - 4160096 - | hypothetical protein TERM 4540 4160437 - 4160471 + g 71 -5.3 -4.52589 | gap 1 TCATCATTCCTTTGT TATTGATAGG-ATAAT GACC ATTATTCCAATCAATA TTTTCTATCAAAGCA TERM 4541 4161040 - 4161016 - R 100 -12.1 -3.80625 | CCGTCATAACGCAAA GCGGCATCCAG TAA CAAGATGCCGC CCCAAATCATTATCA YPN_3634 4164265 - 4161053 - | putative autotransporter protein TERM 4542 4161742 - 4161752 + g 79 -6.8 -4.63527 | opp_overlap 4161726, overlap 4161726 4161725 CGCCAGTCACTTGAG TGCC TGC GGCA TTTTTGGCCTGATAG TERM 4543 4163132 - 4163144 + g 73 -2.7 -5.0538 | GTTATTCCCTTTAGT TATCA CCG TGGTA TTTTTTACGATAGCG TERM 4544 4165049 - 4165033 - g 83 -5.1 -5.08011 | AAAACCGGCAAAAAA GCCATCT CTC ATATGGC CTGCCTCAGTGATCG TERM 4545 4165725 - 4165714 - g 85 -3.6 -5.4756 | AAGCCGAAGAAAAAA GCGC TGTT ACGC GGAGCCCTCATTGCC YPN_3635 4164943 - 4166025 + | hypothetical protein TERM 4546 4166705 - 4166717 + G 76 -3.3 -5.1861 | TGGCAATAACCGCAC TACCC TCT GGGGA TTTTTTACTGCTGGC YPN_3636 4166029 - 4166826 + | CDP-diacylglycerol pyrophosphatase YPN_3637 4169019 - 4166803 - | hypothetical protein TERM 4547 4168595 - 4168577 - G 70 -9.6 -3.33151 | overlap 4168575 CGTTGCAAATGAATA TCTGGCTG CGT CAGCCAAA GGCGGGGGATACGAA TERM 4548 4169313 - 4169298 - R 80 -9 -3.98159 | CAGGAGAAGATGAAA GGCGAT CATT ATCGCC TTAGGGAGCGTTAGC YPN_3638 4170169 - 4169324 - | EAL domain-containing protein YPN_3639 4170253 - 4170588 + | tautomerase TERM 4549 4170661 - 4170643 - f 79 -3.2 -5.34555 | opp_overlap 4170644, overlap 4170636 4170644 TTACATCATAAAAAA TTTAAAAC ACC GTTTTAAT CCTATTGACTCTGGA YPN_3640 4170867 - 4171811 + | 2-dehydro-3-deoxygluconokinase TERM 4550 4171898 - 4171843 - T 86 -11.3 -3.38991 | gap 1, opp_overlap 4171851 4171897, overlap 4171841 AGGCCGCGAATAACA GACGTTAA-TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCATTTTACGCC TGGCTAACGTGGCCT TERM 4551 4171851 - 4171889 + T 100 -12.5 -4.11692 | opp_overlap 4171843 4171841 AATAACAGACGTTAA TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCA TTTTACGCCTGGCTA YPN_3641 4173474 - 4171975 - | insulinase family protease TERM 4552 4172313 - 4172335 + g 86 -7 -5.05601 | TACGCGCATAGGTGG CGAACAACTT ACT GAGTTGGTCG TTTTTCTGTGTCATC TERM 4553 4172949 - 4172918 - G 74 -8.6 -4.00042 | opp_overlap 4172921, overlap 4172921 TGGCCGATTAAAGAA GAACCTTTGAGGCG ATAA CGCCACCACGGTTC CTGAATATTTTGTGG TERM 4554 4173251 - 4173239 - G 73 -9.1 -3.77464 | opp_overlap 4173238 4173232 4173230 AGACGAGGCAGTAAA TGGGC AAA GCCCA CTTCCTGTGTATTTT TERM 4555 4173796 - 4173766 - R 100 -17.7 -2.9294 | overlap 4173784 GACATTATGCAGAGA CGCTACCAGTGAC AGCAA GCCACTGGTAGCG AATTGAAGGGAGAAA YPN_3642 4175128 - 4173839 - | C4-dicarboxylate transporter DctA TERM 4556 4175529 - 4175558 + r 76 -10.7 -2.71791 | opp_overlap 4175527 4175523, overlap 4175528 GGGATAGAACTTACA GGCTCCTGTGCAA TAAC TAGCACAGGAGCG GTTTACGGCAGCGAT YPN_3643 4176062 - 4175583 - | hypothetical protein TERM 4557 4175700 - 4175724 + g 70 -2.8 -4.84017 | opp_overlap 4175709, overlap 4175701 ATATTTGGCGTTGAT AGGCGAAAAG GTCAA CTTTTCACCC TTTTTGTCCGCAGTT YPN_3644 4177905 - 4176187 - | periplasmic pectate lyase precursor TERM 4558 4178102 - 4178079 - R 72 -9.5 -3.14344 | opp_overlap 4178079 4178092 4178097 GACTCGGCCCATCAA GGGGCCTCG CCTCTT CGAGGCCGC AGCAAGCAGCCTTCC YPN_3645 4178855 - 4178151 - | hypothetical protein YPN_3646 4181681 - 4179495 - | biofilm formation regulator HmsP YPN_3647 4182744 - 4181824 - | endo-1,4-D-glucanase dppF 4184118 - 4183042 - | dipeptide transporter ATP-binding subunit dppD 4185095 - 4184115 - | dipeptide transporter ATP-binding subunit YPN_3650 4186011 - 4185109 - | dipeptide transporter YPN_3651 4187041 - 4186022 - | dipeptide transporter permease DppB TERM 4559 4187065 - 4187090 + r 75 -8.9 -3.64487 | opp_overlap 4187065 4187064 CTCTCTGTGTAGAAT GCCGGGCTGCT CATA GGCAACCTGGC TTATTAAACCTCTCC TERM 4560 4187309 - 4187276 - R 73 -5.9 -4.50159 | overlap 4187278 TTTAACCTAAATAAA TAGACCGATGAACGT TGAT ACGCACACCGGTCCG GTATAAGGGTAAAAT TERM 4561 4187307 - 4187278 - R 88 -10.7 -3.8535 | overlap 4187276 TAACCTAAATAAATA GACCGATGAACGT TGAT ACGCACACCGGTC CGGTATAAGGGTAAA YPN_3652 4188931 - 4187324 - | periplasmic dipeptide transport protein YPN_3653 4191363 - 4189600 - | hemolysin activator protein TERM 4562 4191436 - 4191415 - R 70 -3.7 -4.90918 | overlap 4191410 ACAAAATCAATAAAA GTTAGCCAC GAAA GCAACTAAC TTTAAATAAAAAATC YPN_3654 4192863 - 4191472 - | hypothetical protein TERM 4563 4193146 - 4193165 + r 100 -13.6 -3.78904 | opp_overlap 4193146 AATGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4564 4193165 - 4193146 - R 100 -13.6 -5.63504 | opp_overlap 4193146 AATGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4565 4193343 - 4193307 - R 70 -8.1 -3.62775 | gap 1, opp_overlap 4193310, overlap 4193308 4193333 ATCACTTTTTAATAA CCTGCGGATGACTGCT GTTAAA AGCA-TCACCCGCAGT GAAAATGGCCGCCTT TERM 4566 4193342 - 4193308 - R 81 -11.6 -2.77344 | gap 1, opp_overlap 4193310, overlap 4193307 4193333 TCACTTTTTAATAAC CTGCGGATGACTGCT GTTAAA AGCA-TCACCCGCAG TGAAAATGGCCGCCT YPN_3655 4194700 - 4193369 - | regulatory protein UhpC TERM 4567 4193572 - 4193552 - G 71 -6.7 -4.21351 | opp_overlap 4193555 AAATAGCCCAACAAA GCCGGTTGC AGC GCCAGCGGC ATCCTTATGAGAGCA YPN_3656 4195505 - 4194795 - | ATP-binding region, ATPase-like YPN_3657 4196379 - 4195600 - | transposase/IS protein TERM 4568 4196298 - 4196312 + g 77 -11.4 -3.3506 | overlap 4196311 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_3658 4197401 - 4196379 - | transposase for insertion sequence IS100 TERM 4569 4197423 - 4197405 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPN_3659 4198283 - 4197483 - | hypothetical protein TERM 4570 4197867 - 4197852 - G 70 -8.2 -3.69338 | opp_overlap 4197856, overlap 4197843 4197855 AACCAACCCTAATAA GAGCGC CATT GCGCCC TGCCCACTGGCTATC YPN_3660 4198870 - 4198280 - | two-component system response regulator TERM 4571 4198979 - 4198951 - R 74 -4.6 -4.81551 | gap 1, overlap 4198952 4198953 GAGGCACATCAAAAA TTGGGCCAGACTT GGGT AAGCCTGGCC-AG TTACGGCTAAATTGC TERM 4572 4198978 - 4198953 - R 71 -9.7 -2.68202 | overlap 4198952 4198951 GGCACATCAAAAATT GGGCCAGACTT GGGT AAGCCTGGCCA GTTACGGCTAAATTG YPN_3661 4200677 - 4198986 - | phosphoethanolamine transferase TERM 4573 4201098 - 4201073 - R 100 -10.3 -4.46656 | overlap 4201074 4201075 GGCAGAAGAGTAAAA TGCCCGCGCCA GAGA TGGCGCGGGTC GAGCTCCCAAGGAAG TERM 4574 4201097 - 4201074 - R 100 -13.8 -3.27271 | overlap 4201073 4201075 GCAGAAGAGTAAAAT GCCCGCGCCA GAGA TGGCGCGGGT CGAGCTCCCAAGGAA TERM 4575 4201096 - 4201075 - R 100 -17.3 -2.5564 | overlap 4201074 4201073 CAGAAGAGTAAAATG CCCGCGCCA GAGA TGGCGCGGG TCGAGCTCCCAAGGA TERM 4576 4201179 - 4201190 + r 82 -5.8 -5.00616 | overlap 4201175 GTCGCGAGCACGTTG CCAG CAGC CTGG TTTTTTGCAGGCAAA YPN_3662 4202669 - 4201206 - | hypothetical protein TERM 4577 4202459 - 4202476 + g 70 -2.1 -5.00895 | gap 1, overlap 4202459 4202460 TAATTCGGACTTCAT C-GAAAAT ATT ATTTTCAG TTTTTATGTAATCCG TERM 4578 4202588 - 4202608 + g 73 -9.1 -3.72324 | opp_overlap 4202587 GTGTATCGTAGATAC GTATTGCCA GTA TGGTAATAC TTATTACTACCAATA TERM 4579 4203125 - 4203088 - R 82 -4.9 -5.41143 | gap 1, overlap 4203092 4203093 CATGCTTGAAAAAAA TAAATCGGGCCGCTGATA CCC CATCAACCGCCCG-TTAA CATTTGTTCCCTTAC TERM 4580 4203122 - 4203092 - R 100 -8.2 -5.20328 | overlap 4203088 4203093 CTTGAAAAAAATAAA TCGGGCCGCTGATA CCC CATCAACCGCCCGT TAACATTTGTTCCCT TERM 4581 4203121 - 4203093 - R 90 -11.7 -3.7057 | overlap 4203092 4203088 TTGAAAAAAATAAAT CGGGCCGCTGATA CCC CATCAACCGCCCG TTAACATTTGTTCCC YPN_3663 4204540 - 4203137 - | amino acid permease YPN_3664 4206490 - 4204958 - | histidine ammonia-lyase YPN_3665 4208178 - 4206487 - | urocanate hydratase TERM 4582 4207490 - 4207473 - G 71 -6.9 -4.20769 | opp_overlap 4207473 4207471 ACAGTGCAATAGAAA CCGCGAC ACCT GTAGCGG TATATTTCTCGATGC YPN_3666 4208905 - 4209849 + | pyridoxal-phosphate dependent protein TERM 4583 4210380 - 4210363 - g 71 -7.1 -4.20696 | opp_overlap 4210365 GCATTAACGTTAAAA CACTAAT GAAA ATTAGTG TTAAACCTCATGGGG YPN_3667 4209846 - 4210412 + | adenine phosphoribosyltransferase TERM 4584 4211410 - 4211393 - g 73 -2.7 -4.99043 | overlap 4211396 TCGGCATAAACAAAA TTATTGG GAAC CCAAAAA CAAAAGGGGCATAAC YPN_3668 4210495 - 4211424 + | hypothetical protein TERM 4585 4211927 - 4211937 + G 91 -6.8 -5.17054 | opp_overlap 4211917 CAAGATAAGCAGAGT GCGT ATC ACGC TTTTTTGGCTATTCT TERM 4586 4212222 - 4212211 - g 76 -5.8 -4.72272 | opp_overlap 4212215, overlap 4212212 TCTGGGGATCAAAAA TGGC CCTA GCCA TGCGGAGGTGATGAT YPN_3669 4211426 - 4212670 + | hypothetical protein YPN_3670 4213193 - 4214146 + | iron transport protein YPN_3671 4214156 - 4215115 + | iron transport permease TERM 4587 4215199 - 4215219 + G 83 -9.7 -4.25256 | overlap 4215196 TATTGCTACTGAGCA TCATCGCTC TCG GTGCGATGA TTATTTTCATGACAA YPN_3672 4215105 - 4216112 + | iron transport permease YPN_3673 4216109 - 4216867 + | iron ABC transporter, ATP-binding protein YPN_3674 4217427 - 4216864 - | hypothetical protein YPN_3675 4217785 - 4217600 - | hypothetical protein YPN_3676 4218813 - 4219175 + | regulator TERM 4588 4219627 - 4219614 - g 76 -5.2 -4.76041 | overlap 4219616 CATAGTCAGGAAAAA CGCC GCGTCT GGCG AAAACGGCACCTTGC YPN_3677 4219347 - 4219853 + | transposase YPN_3678 4219853 - 4220146 + | hypothetical protein TERM 4589 4220626 - 4220644 + T 76 -6.7 -4.55287 | overlap 4220625 GGCTCTCACCACTTC GCCCTTG CCGTT TAAGGGC TTTTCTCTGGCTAGC YPN_3679 4222305 - 4220833 - | hypothetical protein YPN_3680 4223392 - 4222199 - | phage integrase YPN_3681 4224971 - 4223778 - | AraC family transcription regulator TERM 4590 4225042 - 4225023 - R 82 -5.7 -4.91459 | opp_overlap 4225023 GAACAGGCAGAAAAA TCAGCGC GGTATG GCACTGA TTTTCCTATGGGATA YPN_3682 4226245 - 4225061 - | sugar transport system permease protein TERM 4591 4225958 - 4225945 - G 72 -3.8 -4.84527 | overlap 4225946 GCCAGACATCAAAAA TGGC CGCTAT GCCA CCCAATAACCCCATC YPN_3683 4227764 - 4226232 - | xylose transporter ATP-binding subunit TERM 4592 4227453 - 4227436 - G 80 -10.5 -3.727 | overlap 4227425 4227430 TCCATGATACCGAAA CGGCCCC ATTC GGAGCCG AGGAACATGTTCTCC xylF 4228967 - 4227972 - | D-xylose transporter subunit XylF TERM 4593 4229109 - 4229124 + H 70 -2.6 -4.95484 | overlap 4229111 GTTTAATGTTAATTT TATGAT AACG ATCATG TTTTCTTTCCTCATA TERM 4594 4229413 - 4229403 - H 74 -6.8 -4.2717 | opp_overlap 4229391 ACCAGCCCAGCAAAA GCAG GGC CTGC TTCCAAGGAGTATTG YPN_3685 4229430 - 4230749 + | xylose isomerase TERM 4595 4231140 - 4231174 + G 76 -5.7 -4.59773 | gap 1, opp_overlap 4231128 4231136 AAACAACATCAGGTG CTGCGCCCCGCCATTT TATG GAATGACGGC-CGCAG TTTTTCCCAGTGCCA TERM 4596 4231856 - 4231831 - g 84 -4.6 -5.28176 | opp_overlap 4231831 CTGAGGTAGAAAAAA CCCCAATGGC TGCAAC GCCAGTGTGG TTCCTACCCTATCTT YPN_3686 4230873 - 4232327 + | xylulose kinase TERM 4597 4232389 - 4232419 + T 100 -9.1 -4.82901 | opp_overlap 4232389 4232388 4232386, overlap 4232390 AGTGCGAATAAACAC CGTGCTGGGTAAT TCATT ATTACTCAGCACA TTTTTATAGGGCCAC TERM 4598 4232390 - 4232418 + T 100 -12.6 -3.49419 | opp_overlap 4232389 4232388 4232386, overlap 4232389 GTGCGAATAAACACC GTGCTGGGTAAT TCATT ATTACTCAGCAC ATTTTTATAGGGCCA YPN_3687 4233431 - 4232445 - | hypothetical protein YPN_3688 4234237 - 4233470 - | fimbrial chaperone TERM 4599 4233588 - 4233566 - G 70 -11.4 -2.69717 | overlap 4233565 4233561 ATCCATATAACCAAC GTTATAACGG CTA CCGCTATAAC CCGGCGTTTTAACAA YPN_3689 4234965 - 4234330 - | outer membrane fimbrial usher porin TERM 4600 4234882 - 4234894 + g 73 -6.3 -4.5448 | CCAGTTGGTATTGAT TGAGT TGT ACTCA TTATTTTTATGGCTA YPN_3690 4236820 - 4234991 - | hypothetical protein TERM 4601 4236778 - 4236792 + g 100 -2.1 -6.34616 | TTGTTAATACTTTCA CCATT AGGAA GATGG TTTTTTTTCTTTTAG TERM 4602 4236850 - 4236883 + r 93 -11.9 -3.66497 | opp_overlap 4236851 4236854, overlap 4236842 4236851 4236854 4236859 CTTATGGCGATAATA TTAATTAGAGGGGAG TTAC CTCCCCTTTAATTAC TTTAAACATTTGTTA TERM 4603 4236851 - 4236882 + r 100 -15.4 -2.79175 | opp_overlap 4236851 4236854, overlap 4236850 4236842 4236854 4236859 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 4604 4236882 - 4236851 - R 90 -13.2 -2.53271 | opp_overlap 4236851 4236850 4236842 4236854 4236859, overlap 4236854 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 4605 4236854 - 4236879 + r 100 -12.7 -3.5332 | opp_overlap 4236851 4236854, overlap 4236851 4236850 4236842 4236859 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 4606 4236879 - 4236854 - R 80 -10.5 -3.41745 | opp_overlap 4236854 4236851 4236850 4236842 4236859, overlap 4236851 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 4607 4236859 - 4236874 + r 89 -10.4 -4.04394 | opp_overlap 4236854 4236851, overlap 4236854 4236851 4236850 4236842 ATAATATTAATTAGA GGGGAG TTAC CTCCCC TTTAATTACTTTAAA YPN_3691 4237453 - 4236896 - | fimbrial protein TERM 4608 4238134 - 4238161 + r 75 -3.4 -5.24129 | opp_overlap 4238134 TTTAACACAATCCAA GCCACTGAGA ATAAACCC TCTCGGTAGC TTTTTTATAAACCAA TERM 4609 4238205 - 4238186 - R 85 -4.4 -5.50925 | opp_overlap 4238202 AACCAAGATAAAAAA TAACTTTA GCAT TAAAGTCA GTGTCGTATATTGGC YPN_3692 4239327 - 4238335 - | hypothetical protein TERM 4610 4238906 - 4238916 + g 70 -8.2 -3.67976 | ATTGCCAGATAGCGG CCCG AAA CGGG TTTAACCTTAATAAG TERM 4611 4239683 - 4239627 - g 73 -10.3 -3.30159 | gap 1, opp_overlap 4239632 4239637 4239642, overlap 4239628 4239637 CCAATGGGGCCATAA GTGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCAA TGAAACACCCTTTTT TERM 4612 4239682 - 4239628 - g 78 -13.8 -2.57881 | gap 1, opp_overlap 4239632 4239637 4239642, overlap 4239627 4239637 CAATGGGGCCATAAG TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 4613 4239632 - 4239678 + G 89 -15.4 -3.05384 | gap 1, opp_overlap 4239628 4239627 4239637, overlap 4239637 4239642 GGGGCCATAAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4614 4239637 - 4239673 + G 73 -10.3 -3.19192 | gap 1, opp_overlap 4239628 4239627 4239637, overlap 4239632 4239642 CATAAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4615 4239672 - 4239637 - g 79 -12.7 -3.08471 | opp_overlap 4239637 4239632 4239642, overlap 4239628 4239627 CATAAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4616 4239642 - 4239652 + G 76 -5.4 -4.88736 | opp_overlap 4239637 4239628 4239627, overlap 4239637 4239632 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPN_3693 4239524 - 4240198 + | insertion element IS1661 DNA-binding protein TERM 4617 4241018 - 4241000 - g 71 -11 -2.73735 | overlap 4240990 4240988 4241011 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPN_3694 4240252 - 4241037 + | transposase for insertion sequence IS1661 TERM 4618 4241094 - 4241072 - f 71 -9 -3.32844 | GGGTTCAGTGCATAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG YPN_3695 4241510 - 4242739 + | multidrug translocase TERM 4619 4242744 - 4242787 + F 73 -7.4 -4.08394 | overlap 4242747 CTACCGAGTAAGTTT ATTCCCTGCTGGAGGAGC GTCAGGTA GCTTCTCCAGCAGGATAG TTTTACCCACGCTAT TERM 4620 4242747 - 4242784 + F 100 -13.5 -3.08032 | overlap 4242744 CCGAGTAAGTTTATT CCCTGCTGGAGGAGC GTCAGGTA GCTTCTCCAGCAGGA TAGTTTTACCCACGC YPN_3696 4243185 - 4243370 + | hypothetical protein YPN_3697 4243449 - 4244030 + | hypothetical protein TERM 4621 4244059 - 4244032 - T 78 -9.2 -3.62235 | opp_overlap 4244038, overlap 4244030 4244035 ATGAAAGAAAATAGA CAGCAAGGAGGA TCAT TCCTCCTTATTG GAAAGATATCTATAT TERM 4622 4244038 - 4244053 + T 75 -9 -3.62224 | opp_overlap 4244035 4244032 4244030 GAAAATAGACAGCAA GGAGGA TCAT TCCTCC TTATTGGAAAGATAT YPN_3698 4244376 - 4244044 - | membrane protein TERM 4623 4244854 - 4244866 + G 86 -6.3 -5.18726 | GTTGTACCGGGCACC TTGAG GGA CTCAA TTTTTATTCTGGAGG YPN_3699 4244665 - 4245129 + | transposase YPN_3700 4247088 - 4245136 - | selenocysteinyl-tRNA-specific translation factor YPN_3701 4248473 - 4247085 - | selenocysteine synthase YPN_3702 4249586 - 4248657 - | formate dehydrogenase accessory protein FdhE TERM 4624 4249532 - 4249505 - G 74 -7.6 -4.12942 | opp_overlap 4249497 4249506 4249509, overlap 4249509 TTAAATTTGCGAAAA GTAACGGCGGGA TATT CCCCGCCGTTGT ACCTTTTTCGCGTTG TERM 4625 4249506 - 4249531 + g 77 -12.6 -2.85019 | opp_overlap 4249505 4249509, overlap 4249497 4249509 TAAATTTGCGAAAAG TAACGGCGGG ATATTC CCCGCCGTTG TACCTTTTTCGCGTT TERM 4626 4249509 - 4249528 + g 82 -12.1 -3.5616 | opp_overlap 4249505 4249509, overlap 4249506 4249497 ATTTGCGAAAAGTAA CGGCGGG ATATTC CCCGCCG TTGTACCTTTTTCGC TERM 4627 4249528 - 4249509 - G 85 -12.8 -3.67175 | opp_overlap 4249509 4249506 4249497, overlap 4249505 ATTTGCGAAAAGTAA CGGCGGGA TATT CCCCGCCG TTGTACCTTTTTCGC YPN_3703 4250260 - 4249586 - | formate dehydrogenase-O subunit gamma TERM 4628 4250105 - 4250060 - G 74 -4.7 -4.81734 | gap 2, overlap 4250061 4250071 4250074 AAACATGATCAAAAA GGCCGCGAACATCACCACCCC GGCAAA GGGGTGAAGA-ATGCGCG-CC ATCTGTGGTGTACCA TERM 4629 4250216 - 4250245 + g 100 -7 -5.77571 | overlap 4250217 TATCCAGTGGTTAAT GCGCTCCGGCGC GCTGTA GCGCTGGATCGG TTTTTCTTTTTTCAT TERM 4630 4250217 - 4250244 + g 84 -10.5 -4.02882 | overlap 4250216 ATCCAGTGGTTAATG CGCTCCGGCGC GCTGTA GCGCTGGATCG GTTTTTCTTTTTTCA YPN_3704 4251228 - 4250257 - | formate dehydrogenase-O, iron-sulfur subunit TERM 4631 4250572 - 4250593 + g 76 -11.6 -3.28712 | opp_overlap 4250587, overlap 4250587 4250587 GGTACCGCCGACGCC CGCAGGGT CATATA ACCCTGCG TTATCAAACCCACGG YPN_3705 4253652 - 4251241 - | hypothetical protein TERM 4632 4252566 - 4252584 + g 73 -3 -4.96501 | overlap 4252567 4252568 4252570 CCAAGAATTTCAGCT TCGACAGC GCC GCTGTCAC TTTGTTTTTATCCGG YPN_3706 4254288 - 4253701 - | twin-arginine translocation pathway signal TERM 4633 4254996 - 4254959 - g 79 -9.1 -4.18018 | opp_overlap 4254993 4254994, overlap 4254961 CTTGCCCAGCTAAAA CAGGTACAACCGGTCGG TCAA CTCACCGGCTGTACCCA TGCTGCCGCGTGGAT TERM 4634 4254994 - 4254961 - g 85 -11.7 -3.69216 | opp_overlap 4254993, overlap 4254959 TGCCCAGCTAAAACA GGTACAACCGGTCGG TCAA CTCACCGGCTGTACC CATGCTGCCGCGTGG YPN_3707 4254485 - 4255309 + | formate dehydrogenase accessory protein TERM 4635 4255367 - 4255345 - f 78 -4.2 -5.22312 | ATCCACACCAAAAAA TATCATTGAT GAC ACCAAAGATA TAACGATAGTGGCGA TERM 4636 4255566 - 4255547 - f 71 -4.9 -4.7416 | overlap 4255550 GTAAAACGTCAAAAA GAAGCGG GTTACG CCGCATC ATAAATTAATTTTAT TERM 4637 4255563 - 4255550 - f 70 -5.2 -4.45259 | overlap 4255547 AAACGTCAAAAAGAA GCGG GTTACG CCGC ATCATAAATTAATTT YPN_3708 4255745 - 4256368 + | superoxide dismutase TERM 4638 4256403 - 4256386 - f 70 -5.5 -4.42386 | opp_overlap 4256386 CGCTTATCCATAAAA CGGGC CTTAAACC GCCCG TTGCATAGCCAAAGA TERM 4639 4256486 - 4256454 - f 76 -9.2 -3.50722 | opp_overlap 4256458, overlap 4256452 4256456 4256458 TTCAAGTACGAAAGA TACATGCCAGCAAG GCCCT CTTGCTGGCATTTT TATTGTTAAAGTTTC TERM 4640 4256484 - 4256456 - f 89 -11.8 -3.32233 | opp_overlap 4256458, overlap 4256454 4256452 4256458 CAAGTACGAAAGATA CATGCCAGCAAG GCCCT CTTGCTGGCATT TTTATTGTTAAAGTT TERM 4641 4256458 - 4256482 + F 100 -15.1 -5.29445 | opp_overlap 4256456 4256454 4256452 4256458 AGTACGAAAGATACA TGCCAGCAAGG CCC TCTTGCTGGCA TTTTTATTGTTAAAG TERM 4642 4256482 - 4256458 - f 100 -14.4 -3.21671 | opp_overlap 4256458, overlap 4256456 4256454 4256452 AGTACGAAAGATACA TGCCAGCAAG GCCCT CTTGCTGGCA TTTTTATTGTTAAAG YPN_3709 4256712 - 4258661 + | methyl-accepting chemotaxis protein II TERM 4643 4259089 - 4259079 - g 100 -5.4 -6.15717 | GAAATAGAAAAAAAA GTGA ATG TCAC GTGTAGCAAAGCACG TERM 4644 4259131 - 4259121 - g 74 -2.6 -5.06816 | AGTTTGCAAGAAAAA TTAA GCG TTAA ATACAAAAAAAGACA YPN_3710 4258851 - 4259183 + | membrane protein YPN_3711 4259715 - 4260191 + | hypothetical protein TERM 4645 4260341 - 4260314 - T 80 -10.5 -3.56375 | overlap 4260312 4260309 4260305 4260316 GCAAAAGGAACAACA CACCGGGTGGC GGCCAT GCCACCCAGAG GTTACCGCAAAGCGG TERM 4646 4260339 - 4260316 - T 86 -11.7 -3.33839 | overlap 4260314 4260312 4260309 4260305 AAAAGGAACAACACA CCGGGTGGC GGCCAT GCCACCCAG AGGTTACCGCAAAGC TERM 4647 4260356 - 4260368 + T 71 -3.3 -5.0538 | opp_overlap 4260366 GGTTACCGCAAAGCG GCGAT CAA AACGC TTTTTTAGCGTAGCC YPN_3712 4260716 - 4260360 - | hypothetical protein TERM 4648 4260535 - 4260546 + g 70 -2.2 -5.03715 | GCCAGTTTTTGAGCT TCTG CACT CAGG TTTTTTACCCGTACT TERM 4649 4260567 - 4260590 + g 82 -7.4 -4.66456 | gap 1, overlap 4260565 4260569 TACCCGTACTTCTTT CAGGC-GCTGA ATT TCAGCGGCCAG TTTCTCTTTTTCTTT mtlR 4261519 - 4260965 - | mannitol repressor protein TERM 4650 4261700 - 4261663 - R 73 -9.1 -3.54424 | overlap 4261664 4261666 CTTTAGTGTCTTAAA TCATTGGCCCGCTATCG TTTC CGTTATCAGGCCAATGG GACATAGCTGGCTTA TERM 4651 4261699 - 4261664 - R 88 -12.6 -2.72511 | overlap 4261663 4261666 TTTAGTGTCTTAAAT CATTGGCCCGCTATCG TTTC CGTTATCAGGCCAATG GGACATAGCTGGCTT TERM 4652 4261697 - 4261666 - R 71 -9.4 -2.90813 | overlap 4261664 4261663 TAGTGTCTTAAATCA TTGGCCCGCTATCG TTTC CGTTATCAGGCCAA TGGGACATAGCTGGC YPN_3714 4262889 - 4261726 - | mannitol-1-phosphate 5-dehydrogenase YPN_3715 4264957 - 4263026 - | PTS system, mannitol-specific IIABC component TERM 4653 4264994 - 4264962 - R 71 -4.2 -4.89567 | GGTGAAAACATAAAA CACCCCTATTGGTA CGCGC TAACAATAAGAGCG CGATATAATTATTTT TERM 4654 4265127 - 4265115 - R 72 -6.3 -4.26903 | CGTAGCTCACGAAAA TTTCG TGA CGAAA GTCACACAAAACAAC TERM 4655 4265406 - 4265387 - R 100 -11.4 -4.44914 | opp_overlap 4265385 TATGTAAGAAAATAA CAGGGACC AAAA GGCCCCTG AGGTTATTGACAAAG TERM 4656 4265482 - 4265508 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4265471, overlap 4265477 4265483 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4657 4265483 - 4265509 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4265471, overlap 4265477 4265482 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPN_3716 4266326 - 4265607 - | hypothetical protein TERM 4658 4266591 - 4266552 - R 85 -7.3 -4.87786 | gap 1, opp_overlap 4266556 4266557, overlap 4266554 4266557 4266562 CTAACCCCACAAAAA CATAACGT-AAGGGGAGC GTATA GCTCCCCTTGAGGTTATT GACAAAGTGCCCGCG TERM 4659 4266589 - 4266554 - R 86 -9.9 -4.05669 | gap 1, opp_overlap 4266556 4266557, overlap 4266552 4266557 4266562 AACCCCACAAAAACA TAACGT-AAGGGGAGC GTATA GCTCCCCTTGAGGTTA TTGACAAAGTGCCCG TERM 4660 4266585 - 4266557 - R 83 -8.8 -4.13816 | opp_overlap 4266556 4266557, overlap 4266554 4266552 4266562 CCCACAAAAACATAA CGTAAGGGGAGC GTATA GCTCCCCTTGAG GTTATTGACAAAGTG TERM 4661 4266557 - 4266585 + r 77 -11 -2.77013 | opp_overlap 4266557 4266554 4266552 4266562, overlap 4266556 CCCACAAAAACATAA CGTAAGGGGAGC GTATA GCTCCCCTTGAG GTTATTGACAAAGTG TERM 4662 4266580 - 4266562 - R 86 -11.7 -3.33845 | opp_overlap 4266557 4266556, overlap 4266557 4266554 4266552 AAAAACATAACGTAA GGGGAGC GTATA GCTCCCC TTGAGGTTATTGACA TERM 4663 4266659 - 4266685 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4266648, overlap 4266654 4266658 ACATCCATGTAGGCT CGAACCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4664 4266750 - 4266768 + r 90 -11.7 -3.61398 | TGTCAGCAGTCTGAA GGGGAGC GTATA GCTCCCC TTATTGCCCAGCACG glyS 4268868 - 4266799 - | glycyl-tRNA synthetase subunit beta TERM 4665 4267231 - 4267193 - G 74 -7.6 -4.25283 | gap 2, opp_overlap 4267192 ACTCGCGCATCAAAA TCAGCCGGT-TTGG-TCG GACGA CGAGCCAAGACCGCCTGA ATGGTATCGACGCTA glyQ 4269792 - 4268878 - | glycyl-tRNA synthetase subunit alpha TERM 4666 4270295 - 4270282 - g 70 -2.3 -5.00884 | overlap 4270268 ACCGTGCTCAAAAAA CGGGA GCAT TACCG CAAAAGCTTCCATCA YPN_3719 4270120 - 4270692 + | DNA-3-methyladenine glycosylase YPN_3720 4270689 - 4271144 + | hypothetical protein YPN_3721 4271502 - 4272161 + | putative outer membrane lipoprotein TERM 4667 4272247 - 4272219 - T 72 -7.6 -3.80133 | gap 2, opp_overlap 4272222, overlap 4272217 CACCGTGATAAAACA TGCGGATAATGTCC TTT GG-C-TTATCCGCA CTGCTCCCCATTTTC YPN_3722 4272936 - 4272292 - | hypothetical protein YPN_3723 4273455 - 4274435 + | D-isomer specific 2-hydroxyacid dehydrogenase TERM 4668 4274456 - 4274489 + F 76 -9.7 -3.35597 | overlap 4274454 CATCCGCCCGTCAAT TCTATTGGCCTGC CCTGTTTA GCGGGTCAATAGA TGTTTGGCAGGTCAA TERM 4669 4274663 - 4274629 - f 71 -4.2 -4.82901 | TCCTCCCTACAAAAA CCGCTCAGGGATGA GGCTATT TCTTCGCCAAGCGG CACACTGAATCTGCC malS 4274724 - 4276787 + | periplasmic alpha-amylase precursor YPN_3725 4277202 - 4277645 + | membrane protein TERM 4670 4277935 - 4277945 + F 91 -5.4 -5.59502 | AATTCTCTCCTCTTG CCAT TTC ATGG TTTTTTACTTTTTTA avtA 4277995 - 4279365 + | valine--pyruvate transaminase TERM 4671 4279450 - 4279426 - T 100 -12.9 -4.23674 | opp_overlap 4279424 4279423 CTTCACCAATACAAA CAGGGCAGC CAATTAC GCTGCCCTG AAGTTTAATAGCCCG YPN_3727 4281136 - 4279478 - | hypothetical protein TERM 4672 4281343 - 4281312 - R 100 -10.2 -4.41548 | overlap 4281314 GGATACGCCACAAAA TGCACCGGAGAG CGGGGAAT CTCTCCGGTGAA AAGACAAACAAGGGA TERM 4673 4281341 - 4281314 - R 90 -12.8 -2.54186 | overlap 4281312 ATACGCCACAAAATG CACCGGAGAG CGGGGAAT CTCTCCGGTG AAAAGACAAACAAGG YPN_3728 4281973 - 4281509 - | heat shock chaperone IbpB YPN_3729 4282667 - 4282254 - | heat shock protein IbpA TERM 4674 4282843 - 4282831 - H 77 -3.5 -5.23316 | opp_overlap 4282831 CATGAGATCAAAAAA TTTTT CGC AAAAA ATCGTATTGGAAAAT TERM 4675 4283184 - 4283149 - g 71 -10.6 -3.05596 | gap 1, overlap 4283154 TACTCTGGCACCGAA GCCAATATCGCCATGCT CAA AG-ATGACGATACCGGC TGGGCACTACGCCCC YPN_3730 4283035 - 4283373 + | hypothetical protein YPN_3731 4283727 - 4283413 - | hypothetical protein YPN_3732 4284028 - 4283717 - | hypothetical protein TERM 4676 4283998 - 4284011 + g 80 -2.3 -5.43866 | AGGTAAGCTGCTGTT CCGGT AAGA AACGG TTTTTTTGCGCATTC YPN_3733 4284236 - 4285198 + | hypothetical protein YPN_3734 4285192 - 4286145 + | ornithine cyclodeaminase TERM 4677 4286352 - 4286296 - g 73 -10.3 -3.30159 | gap 1, opp_overlap 4286301 4286306 4286311, overlap 4286297 4286306 CCAATGGGGCCATAA GTGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCAA TGAAACACCCTTTTT TERM 4678 4286351 - 4286297 - g 78 -13.8 -2.57881 | gap 1, opp_overlap 4286301 4286306 4286311, overlap 4286296 4286306 CAATGGGGCCATAAG TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 4679 4286301 - 4286347 + G 89 -15.4 -3.05384 | gap 1, opp_overlap 4286297 4286296 4286306, overlap 4286306 4286311 GGGGCCATAAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4680 4286341 - 4286306 - g 79 -12.7 -3.08471 | opp_overlap 4286301 4286306 4286311, overlap 4286297 4286296 CATAAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4681 4286306 - 4286342 + G 73 -10.3 -3.19192 | gap 1, opp_overlap 4286306 4286297 4286296, overlap 4286301 4286311 CATAAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4682 4286311 - 4286321 + G 76 -5.4 -4.88736 | opp_overlap 4286306 4286297 4286296, overlap 4286306 4286301 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPN_3735 4286199 - 4286867 + | insertion element IS1661 DNA-binding protein TERM 4683 4287687 - 4287669 - g 71 -11 -2.73735 | overlap 4287659 4287657 4287680 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPN_3736 4286921 - 4287706 + | transposase for insertion sequence IS1661 metF 4288776 - 4287892 - | 5,10-methylenetetrahydrofolate reductase metL 4291444 - 4289009 - | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 4684 4289909 - 4289891 - G 84 -10.3 -4.08767 | TTCATCGTTGTAAAA TGCCAGC GTCCG GCTGGCA TCCAAACCATCGTAA YPN_3739 4291590 - 4291447 - | cystathionine gamma-synthase YPN_3740 4292606 - 4291617 - | hypothetical protein YPN_3741 4292984 - 4293301 + | transcriptional repressor protein MetJ YPN_3742 4293638 - 4294105 + | hypothetical protein TERM 4685 4294126 - 4294161 + T 74 -4.8 -4.74801 | overlap 4294128 4294132 4294144 4294145 TCGCTACAATTAACC TTTTCACTGCAGTTAA CCTT TTCACTGCAGTTAATA TTTTTACTGCAGTTA TERM 4686 4294128 - 4294159 + T 72 -7.4 -3.98658 | overlap 4294126 4294132 4294144 4294145 GCTACAATTAACCTT TTCACTGCAGTTAA CCTT TTCACTGCAGTTAA TATTTTTACTGCAGT TERM 4687 4294132 - 4294155 + T 73 -8.2 -3.62531 | overlap 4294128 4294126 4294144 4294145 CAATTAACCTTTTCA CTGCAGTTAA CCTT TTCACTGCAG TTAATATTTTTACTG TERM 4688 4294242 - 4294214 - T 79 -3.1 -5.31275 | opp_overlap 4294214 TTTCACTACAAAAAA TGGTTCAGCATAA CAA TTGTGCTTAGCCA TTTTTTCTTTACGCA TERM 4689 4294214 - 4294242 + T 100 -7.5 -5.63517 | opp_overlap 4294214 TTTCACTACAAAAAA TGGTTCAGCATAA CAA TTGTGCTTAGCCA TTTTTTCTTTACGCA TERM 4690 4294594 - 4294608 + T 100 -12.8 -4.96848 | opp_overlap 4294594 AGTGGCAACAAAAAA GGCGCC CAA GGCGCC TTTTTATCTGACGGG TERM 4691 4294608 - 4294594 - T 100 -12.8 -5.45652 | opp_overlap 4294594 AGTGGCAACAAAAAA GGCGCC CAA GGCGCC TTTTTATCTGACGGG rpmE 4294845 - 4294630 - | 50S ribosomal protein L31 TERM 4692 4294946 - 4294913 - H 90 -11.2 -3.94409 | opp_overlap 4294919, overlap 4294916 CACACGATTGATAAA TAACCATCGTTGAT AAAATA AGCAACGATGGTTA ACAGGATTTGATATC TERM 4693 4294943 - 4294916 - H 79 -8.5 -4.09519 | opp_overlap 4294919, overlap 4294913 ACGATTGATAAATAA CCATCGTTGAT AAAATA AGCAACGATGG TTAACAGGATTTGAT YPN_3744 4295088 - 4297286 + | primosome assembly protein PriA TERM 4694 4297370 - 4297417 + F 78 -5.6 -4.85918 | TGATTCAGGTGAGGG GATATGGCGAACCCCTTG CAGCGTCAAGAA AAAGGGGTTCGCCCGATC TTTTATTGTCTGATC YPN_3745 4297639 - 4298667 + | DNA-binding transcriptional regulator CytR YPN_3746 4298832 - 4299578 + | cell division protein FtsN YPN_3747 4299678 - 4300202 + | ATP-dependent protease peptidase subunit hslU 4300273 - 4301604 + | ATP-dependent protease ATP-binding subunit TERM 4695 4301652 - 4301682 + F 100 -15.4 -4.9934 | overlap 4301655 TCCAGTATGGAGTAT CCCGAGTGGGAGGC ATC GCCTCCCACTCTTG TTTTTATCGTATTAT TERM 4696 4301655 - 4301679 + F 100 -20.1 -4.57057 | overlap 4301652 AGTATGGAGTATCCC GAGTGGGAGGC ATC GCCTCCCACTC TTGTTTTTATCGTAT TERM 4697 4301711 - 4301733 + F 70 -2.8 -5.06451 | ATGATTCTTATCGCA TTATGATTTT GAT AACGTCATAA TTTTTTGACATGATA TERM 4698 4301882 - 4301859 - g 83 -13.2 -3.27029 | overlap 4301857 4301868 4301872 GCCTATCAATCAACA CCAGCCAAAC CCAG GCTTGGCTGG AAAGCCTACGACCAC YPN_3749 4301828 - 4302757 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPN_3750 4302899 - 4303384 + | ribonuclease activity regulator protein RraA YPN_3751 4304085 - 4303501 - | hypothetical protein TERM 4699 4304706 - 4304681 - R 100 -14.1 -3.33815 | opp_overlap 4304681 ATCCCTTTCAATTAA TATGCCAGCGC TTTC ACGCTGGCATA TTTACTTATTACTGC TERM 4700 4304681 - 4304706 + r 100 -13.4 -4.09805 | opp_overlap 4304681 ATCCCTTTCAATTAA TATGCCAGCG CTTTCA CGCTGGCATA TTTACTTATTACTGC YPN_3752 4304954 - 4304715 - | hypothetical protein YPN_3753 4305167 - 4306459 + | hypothetical protein YPN_3754 4306452 - 4308566 + | hypothetical protein TERM 4701 4308769 - 4308798 + F 100 -13.7 -3.28712 | opp_overlap 4308774, overlap 4308774 ATCGGCGCACCCACA GAAAAGGGCGATA CTGA TATCGCCCTTTAC TTGTGCCCAGAAAAC TERM 4702 4308793 - 4308774 - f 100 -12.2 -4.55287 | opp_overlap 4308769 4308774 CGCACCCACAGAAAA GGGCGATA CTGA TATCGCCC TTTACTTGTGCCCAG TERM 4703 4308774 - 4308793 + F 100 -12.2 -3.9941 | opp_overlap 4308774, overlap 4308769 CGCACCCACAGAAAA GGGCGATA CTGA TATCGCCC TTTACTTGTGCCCAG TERM 4704 4308813 - 4308831 + F 100 -16 -3.07307 | opp_overlap 4308813 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 4705 4308831 - 4308813 - f 100 -16 -4.36914 | opp_overlap 4308813 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPN_3755 4308944 - 4309402 + | transposase for the IS1541 insertion element TERM 4706 4309476 - 4309508 + T 100 -11.3 -4.44046 | opp_overlap 4309483, overlap 4309480 4309482 4309483 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATTTCCGCTGAC TERM 4707 4309480 - 4309504 + T 100 -9.9 -4.78326 | opp_overlap 4309483, overlap 4309476 4309482 4309483 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATTTCCGC TERM 4708 4309482 - 4309502 + T 100 -12.5 -3.99693 | opp_overlap 4309483, overlap 4309480 4309476 4309483 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATTTCC TERM 4709 4309483 - 4309501 + T 100 -16 -2.98189 | opp_overlap 4309483, overlap 4309482 4309480 4309476 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATTTC TERM 4710 4309501 - 4309483 - T 100 -16 -4.8048 | opp_overlap 4309483 4309482 4309480 4309476 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATTTC YPN_3756 4309849 - 4309610 - | hypothetical protein YPN_3757 4310477 - 4311325 + | glycerol uptake facilitator protein TERM 4711 4312318 - 4312308 - g 79 -5.4 -5.0538 | GGGCATGGCAAAAAA TACC TAC GGTA CGGGTTGCTTCCTGC TERM 4712 4312995 - 4312984 - g 74 -3.6 -5.01732 | AAGGGCTGGAAAAAA GCAG TGGC CCGC GCCCGGGATTGGGAA YPN_3758 4311502 - 4313025 + | hypothetical protein TERM 4713 4313122 - 4313100 - f 80 -9.1 -3.93578 | opp_overlap 4313100, overlap 4313095 TTAAACCAAACACAA CGCGCTATC CCCCC GATGGCGCG TTTTTCGTTGTGAGA TERM 4714 4313100 - 4313122 + F 100 -11.3 -4.93365 | opp_overlap 4313100 4313095 TTAAACCAAACACAA CGCGCTATC CCCCC GATGGCGCG TTTTTCGTTGTGAGA TERM 4715 4314010 - 4313996 - g 73 -9.2 -3.70446 | overlap 4313997 CGACAGTGAAGATAA CCGCCG CAT CGGCGA ACAAGAGTTATTACG glpX 4313262 - 4314272 + | fructose 1,6-bisphosphatase II TERM 4716 4314296 - 4314325 + F 70 -7.8 -3.68619 | GCAATCATTTTTATT CTGCACGGCGCT CGTAAA AGCGCCGTAAAG TTTACATCAGTTAGA YPN_3760 4314427 - 4315173 + | ferredoxin-NADP reductase YPN_3761 4315975 - 4315514 - | hypothetical protein YPN_3762 4316096 - 4316731 + | hypothetical protein TERM 4717 4316816 - 4316802 - f 80 -10 -3.70902 | opp_overlap 4316784 4316802 TGTTGGACAGGTAAA CTGCCT GTC AGGCAG TCATTATTATTGACC TERM 4718 4316802 - 4316816 + F 73 -10 -3.03309 | opp_overlap 4316802, overlap 4316784 TGTTGGACAGGTAAA CTGCCT GTC AGGCAG TCATTATTATTGACC tpiA 4316860 - 4317627 + | triosephosphate isomerase TERM 4719 4317665 - 4317686 + T 84 -6.5 -5.03994 | opp_overlap 4317659 4317657 4317665, overlap 4317659 GGTACAACACAAAAA CCGGCGT AAATAAAA GCGCCGG TTTTTATATATCCAA TERM 4720 4317686 - 4317665 - T 85 -5.8 -5.1523 | opp_overlap 4317665 4317659, overlap 4317659 4317657 GGTACAACACAAAAA CCGGCG TAAATAAAAG CGCCGG TTTTTATATATCCAA YPN_3764 4319094 - 4317859 - | transcriptional regulator YPN_3765 4319231 - 4319968 + | hypothetical protein TERM 4721 4320245 - 4320255 + G 91 -6.8 -5.15634 | CGCCGACCTCCGAAT GCCA TGA TGGC TTTTTTGGTGACCTG YPN_3766 4319965 - 4320678 + | hypothetical protein YPN_3767 4320744 - 4322171 + | membrane transport protein TERM 4722 4322216 - 4322252 + F 71 -8.8 -3.39908 | gap 1, opp_overlap 4322209, overlap 4322215 4322212 4322217 ATTTAAACGTCGCTT AGCCACTGAAGACAAGG TCAT CCT-GTTTTCGGTGGCC TGTCTTTTGGCGCAA TERM 4723 4322217 - 4322251 + F 88 -12.3 -2.63623 | gap 1, opp_overlap 4322209, overlap 4322216 4322215 4322212 TTTAAACGTCGCTTA GCCACTGAAGACAAGG TCAT CCT-GTTTTCGGTGGC CTGTCTTTTGGCGCA YPN_3768 4322289 - 4323065 + | hypothetical protein TERM 4724 4323187 - 4323150 - T 77 -8.5 -3.91897 | gap 1, opp_overlap 4323159 CGCGGTAGCGATAAA CGTTCAACACCACAACAT ACA ACGATGTGGTGTTGG-CG ATAAAGCGGTTGGTA YPN_3769 4324304 - 4323315 - | sulfate transporter subunit TERM 4725 4324500 - 4324448 - R 100 -9.5 -5.00138 | gap 3, opp_overlap 4324448 GACCGAAAGTAAAAA GCCCTCGTAATGTAAACTG--CCCAA CTTT TTGGGATCAGTTCA-ATTTCGAGGGC TTGATGAATGAGCGA YPN_3770 4325508 - 4324525 - | 6-phosphofructokinase fieF 4326628 - 4325726 - | ferrous iron efflux protein F TERM 4726 4326905 - 4326927 + H 74 -7 -4.2535 | CAGAGAATTTCTGGT CTGTGGAATA CCG TATTCCGCCG TTTTCACTATGGTCT YPN_3772 4327000 - 4327122 + | transposase YPN_3773 4328149 - 4327190 - | hypothetical protein YPN_3774 4328370 - 4328194 - | hypothetical protein YPN_3775 4328466 - 4328669 + | hypothetical protein TERM 4727 4328770 - 4328752 - T 100 -14.6 -5.71638 | CAATAAGCAAAAAAA GCCCTCCA TCA TGGAGGGC GAAAGACAGGGATGG cpxP 4329315 - 4328827 - | periplasmic stress adaptor protein CpxP TERM 4728 4329171 - 4329186 + g 76 -6.8 -4.49316 | CATCAAACATGTTAT GGTGAC CGCG GTCGCC TTTCTTGTTCATCAT YPN_3777 4329489 - 4330187 + | DNA-binding transcriptional regulator CpxR TERM 4729 4331198 - 4331209 + G 76 -7.2 -4.35644 | overlap 4331183 4331182 GTCACGGCACCTCCG GGGC CATG GCCC TTATTTTGTAATCCT TERM 4730 4331421 - 4331408 - g 70 -9.5 -3.32498 | TATCGTACAGATGAA GCCCG AGAT CGGGC GTCGGGAGGAACAGG cpxA 4330184 - 4331560 + | two-component sensor protein YPN_3779 4332673 - 4331609 - | bifunctional regulatory protein/DNA repair protein TERM 4731 4332355 - 4332345 - G 80 -2.4 -5.50723 | CGATGAAAATAAAAA GTGC TAA GCCC CAGTTGAGCTGCCAA YPN_3780 4332862 - 4333350 + | methyltransferase cysE 4334294 - 4333473 - | serine acetyltransferase gpsA 4335579 - 4334560 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 4732 4334966 - 4334954 - G 74 -7.7 -4.26076 | overlap 4334955 4334958 GCATTCGCACCAAAA CCGAT GCC ATCGG ACATACCTGCACCGA YPN_3783 4336055 - 4335579 - | preprotein translocase subunit SecB TERM 4733 4336168 - 4336148 - R 82 -10.4 -3.68827 | CACTGACGAGTTAAA GCAGTGGG TCTAG CCCACCGC GCGCATCCAGGGCGT YPN_3784 4336391 - 4336143 - | glutaredoxin 3 YPN_3785 4336944 - 4336510 - | hypothetical protein TERM 4734 4337762 - 4337774 + G 70 -9.1 -3.6269 | opp_overlap 4337761 4337762, overlap 4337760 AGCTGGCGGCTAAAC GCGGT GCA ACCGC TATTTATCTGCATGC TERM 4735 4338724 - 4338695 - g 70 -8.6 -3.74747 | gap 1 GCAACGCTGAGCAAA TGCGTGACCCGGC AACTG GCCAGG-CACACA CCGCCCATACCAGCC YPN_3786 4337341 - 4338888 + | phosphoglyceromutase TERM 4736 4338945 - 4338987 + G 77 -12.1 -3.11634 | opp_overlap 4338942, overlap 4338949 AACTACGAAAGATGC CGTCTCTGACGGTAGAGAG TCTCC CTCTCTGCTGTCAGATAAG TTGAGTCGTCTACCG TERM 4737 4338949 - 4338983 + G 86 -15.9 -2.55722 | opp_overlap 4338942, overlap 4338945 ACGAAAGATGCCGTC TCTGACGGTAGAGAG TCTCC CTCTCTGCTGTCAGA TAAGTTGAGTCGTCT TERM 4738 4339188 - 4339174 - g 95 -2.1 -6.13503 | CAGCAACAAAAAAAA CAACG CAGTT CATTG CTGGATCAACTAAAA TERM 4739 4340007 - 4340029 + G 71 -6.2 -4.28548 | opp_overlap 4340000 4340011, overlap 4340010 TGAAGGCAGCGAAGT CAAAGCCATC GCC GATGGCCGTG TTTTACTGGCTGACT TERM 4740 4340025 - 4340011 - g 77 -10 -3.76952 | opp_overlap 4340010 4340007, overlap 4340000 GGCAGCGAAGTCAAA GCCATC GCC GATGGC CGTGTTTTACTGGCT YPN_3787 4338898 - 4340268 + | hypothetical protein YPN_3788 4340292 - 4340729 + | hypothetical protein YPN_3789 4340726 - 4341226 + | hypothetical protein TERM 4741 4341351 - 4341311 - T 86 -11.3 -3.3506 | opp_overlap 4341302, overlap 4341348 CGTAAATCCTGACAA GGGCTTGGTATCGCA GCGGGTAGTTT TGCAACACCAAGCCC GAAGGGGATAAACTA tdh 4342389 - 4341364 - | L-threonine 3-dehydrogenase YPN_3791 4343610 - 4342399 - | 2-amino-3-ketobutyrate coenzyme A ligase rfaD 4343856 - 4344788 + | ADP-L-glycero-D-mannoheptose-6-epimerase YPN_3793 4344819 - 4345883 + | ADP-heptose:LPS heptosyltransferase II YPN_3794 4345883 - 4346848 + | ADP-heptose:LPS heptosyl transferase I YPN_3795 4347160 - 4348545 + | 3-deoxy-D-manno-octulosonic-acid transferase YPN_3796 4348546 - 4349328 + | lipopolysaccharide core biosynthesis glycosyl transferase coaD 4349325 - 4349804 + | phosphopantetheine adenylyltransferase YPN_3798 4350619 - 4349810 - | formamidopyrimidine-DNA glycosylase TERM 4742 4350660 - 4350687 + r 95 -12.8 -3.16683 | opp_overlap 4350666, overlap 4350666 TGTACTTTATATAAT AAAAAACCCGGC CAAG GCCGGGTTTTTC TTAGTCCGCTAAAAT TERM 4743 4350666 - 4350681 + r 100 -11.8 -5.1356 | opp_overlap 4350666, overlap 4350660 TTATATAATAAAAAA CCCGGC CAAG GCCGGG TTTTTCTTAGTCCGC TERM 4744 4350681 - 4350666 - R 100 -11.8 -5.60689 | opp_overlap 4350666 4350660 TTATATAATAAAAAA CCCGGC CAAG GCCGGG TTTTTCTTAGTCCGC TERM 4745 4350695 - 4350716 + r 83 -8.9 -4.07877 | GGTTTTTCTTAGTCC GCTAAAATT ACTT AATTTTAGC TTCTTTATAGAGTAC rpmG 4350869 - 4350702 - | 50S ribosomal protein L33 rpmB 4351117 - 4350881 - | 50S ribosomal protein L28 radC 4352048 - 4351380 - | DNA repair protein RadC TERM 4746 4352414 - 4352425 + G 71 -7.2 -4.04209 | CGCTACAGGCAGTCT CGGG CTAT CCCG TTTCTGATGATTTGC YPN_3802 4352128 - 4353459 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase dut 4353437 - 4353895 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 4747 4353964 - 4353937 - f 91 -12 -3.56562 | gap 1, opp_overlap 4353932 AAAGCTATCACATAA GCCGC-CTGGGCA TTG TTCCCAGAGCGGC CGGTGTTTGGGTTTT TERM 4748 4354280 - 4354263 - g 76 -4.8 -4.90906 | CTACAAGATGAAAAA GAGACG TTTAAT CGCCTC CGCTTAATCCTGCTG TERM 4749 4354483 - 4354448 - g 72 -4 -4.82901 | opp_overlap 4354464, overlap 4354464 4354465 CCTTCGTGAGAAAAA GCTGCGTGATGGACAA GGCT TTATCCATGATGAAGC GTTACTGGCCACCCA slmA 4354017 - 4354613 + | nucleoid occlusion protein TERM 4750 4354721 - 4354664 - T 100 -21.6 -3.68569 | gap 1, opp_overlap 4354675 4354717, overlap 4354666 4354667 4354687 AAGACATAGAGAGAA CAGCGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCGG-G ATTACCCCATGTTAT TERM 4751 4354720 - 4354666 - T 100 -25.3 -3.40967 | opp_overlap 4354675 4354717, overlap 4354664 4354667 4354687 GACATAGAGAGAACA GCGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCGG GATTACCCCATGTTA TERM 4752 4354719 - 4354667 - T 100 -28.8 -2.63857 | opp_overlap 4354675 4354717, overlap 4354666 4354664 4354687 ACATAGAGAGAACAG CGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCG GGATTACCCCATGTT TERM 4753 4354675 - 4354711 + T 100 -15.2 -3.35867 | opp_overlap 4354667 4354666 4354664 4354687 AGAACAGCGAATCAA GCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGC TTGATTCGGGATTAC TERM 4754 4354699 - 4354687 - T 77 -6.2 -4.68424 | opp_overlap 4354675, overlap 4354667 4354666 4354664 CAAGCTACGCAAAAA GGGC AAACG GCCC TCTTGGCGTAGCTTG pyrE 4355395 - 4354748 - | orotate phosphoribosyltransferase TERM 4755 4355553 - 4355537 - R 100 -9.4 -5.41143 | opp_overlap 4355534 TAGCGGGTAAAAAAA GGCGAC TATCC GTCGCC TAATAAATTTATGAT rph 4356278 - 4355562 - | ribonuclease PH YPN_3807 4356405 - 4357268 + | hypothetical protein TERM 4756 4357332 - 4357301 - f 100 -15.9 -5.5208 | opp_overlap 4357304 4357308 CCAGAACACAAAAAA CCAGCAAGCTCGC TAATCT GCGGGCTTGCTGG TTCGCAGGAAAAGCC TERM 4757 4357304 - 4357329 + F 88 -12.6 -2.70932 | opp_overlap 4357301, overlap 4357308 GAACACAAAAAACCA GCAAGCTCGC TAATCT GCGGGCTTGC TGGTTCGCAGGAAAA TERM 4758 4357743 - 4357764 + G 71 -7.3 -4.10566 | CTGGCTGCGGGTCGC CGCCAAATG GATA TGTTTGGCG TTATTATTATTGCCT YPN_3808 4357671 - 4358294 + | membrane protein ligB 4360010 - 4358307 - | NAD-dependent DNA ligase LigB TERM 4759 4358757 - 4358745 - G 70 -3.3 -4.8543 | CAAGCGGGATAAAAA CTGAG GTT CACAG CCATGTGGTAAGCGT TERM 4760 4359644 - 4359667 + g 71 -7.4 -4.02206 | gap 1 AGAGATTTTTCCGCC CCGCCATCCAC CTT GTG-AGGGCGG TTTCATCTTTGAGTT TERM 4761 4360466 - 4360478 + G 79 -9.1 -4.15044 | opp_overlap 4360466 4360462 GGGCAGGGAAATCAA GCCTG ATT CAGGC TTTGTTAAAAACACA TERM 4762 4360478 - 4360466 - g 70 -9.1 -3.54408 | opp_overlap 4360466, overlap 4360462 GGGCAGGGAAATCAA GCCTG ATT CAGGC TTTGTTAAAAACACA gmk 4360411 - 4361034 + | guanylate kinase rpoZ 4361089 - 4361364 + | DNA-directed RNA polymerase subunit omega TERM 4763 4361940 - 4361922 - g 70 -4.5 -4.68593 | opp_overlap 4361922 TTCATCATTTAAAAA CCGAGCT GGAAG AGCTGGG TTTTGAAGCACTCTA TERM 4764 4362584 - 4362606 + G 76 -7.6 -4.28977 | opp_overlap 4362584, overlap 4362585 CGCATTGTGGAATTA CCGGCTGGTG CCA CACCGGTCGA TTTTGCCTATGTTGT TERM 4765 4362585 - 4362605 + G 74 -11.1 -3.16302 | opp_overlap 4362584, overlap 4362584 GCATTGTGGAATTAC CGGCTGGTG CCA CACCGGTCG ATTTTGCCTATGTTG YPN_3812 4361384 - 4363492 + | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase TERM 4766 4363879 - 4363865 - g 80 -4.2 -5.14563 | TGGGTCAGGAAAAAA CCGGTA TTT CACCAG AAGCGCTGGCACTGG YPN_3813 4363498 - 4364190 + | tRNA guanosine-2'-O-methyltransferase TERM 4767 4366017 - 4366004 - g 71 -5.2 -4.45544 | CGCCATTAAGTAAAA CCGC TCAAAT GCGG TTGCAGGTATTACGT YPN_3814 4364191 - 4366272 + | ATP-dependent DNA helicase RecG TERM 4768 4366455 - 4366429 - T 86 -10.1 -3.9749 | gap 1, opp_overlap 4366438, overlap 4366430 4366445 AGGCAGAAGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4769 4366456 - 4366430 - T 73 -10.1 -2.97771 | gap 1, opp_overlap 4366438, overlap 4366429 4366445 GGCAGAAGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4770 4366534 - 4366549 + T 78 -9 -3.81146 | TTGTCAATAACCTCA GCCTCA TTCA TGAGGC TTCTTAATTCCCAGC YPN_3815 4367852 - 4366638 - | sodium/glutamate symport carrier protein TERM 4771 4368467 - 4368446 - g 73 -2.9 -5.00616 | GCTGGCGCTAAAAAA CGGTGGG GCAGATAT CCCAACG ATGATGGCGGCGCTG TERM 4772 4369020 - 4369008 - g 75 -9.1 -3.88498 | opp_overlap 4369007 CCGTTATATATGAAA CGCCT AAA AGGCG GTGTACTGGCCAATG YPN_3816 4368057 - 4369475 + | membrane permease TERM 4773 4369501 - 4369526 + F 100 -6.9 -5.9873 | gap 1, opp_overlap 4369501 AACACATCACTGAAA TGGTCGGTCATT AAT GATG-CCGGCCA TTTTTTTTATGGTCC YPN_3817 4369623 - 4371332 + | exported protein TERM 4774 4371428 - 4371447 + T 79 -8.6 -4.11216 | opp_overlap 4371428 TCGCCCGGCAGCAAA TCACTGGC TCAT GTCAGTGA TTTTAAGGGTACCAG YPN_3818 4372390 - 4371467 - | hypothetical protein TERM 4775 4372638 - 4372656 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT YPN_3819 4372660 - 4373682 + | transposase for insertion sequence IS100 TERM 4776 4373763 - 4373749 - g 77 -11.4 -3.3506 | overlap 4373740 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPN_3820 4373682 - 4374461 + | transposase/IS protein YPN_3821 4374573 - 4375058 + | hypothetical protein aroE 4375934 - 4375113 - | shikimate 5-dehydrogenase YPN_3823 4376515 - 4375943 - | putative ribosome maturation factor TERM 4777 4376018 - 4376001 - G 73 -9.1 -3.67792 | overlap 4376011 TCAGATGGATTCAAA CGGCCAC CAAC GTGACCG GATAACACCGGTAAT YPN_3824 4377077 - 4376517 - | DNA-binding protein YPN_3825 4377570 - 4377097 - | hypothetical protein YPN_3826 4378663 - 4377542 - | hypothetical protein TERM 4778 4377988 - 4377966 - GH 72 -7.1 -3.91084 | gap 1, overlap 4377968 CGAGCGGTAATCAAA GA-GCCACTT TTTA AAGTGGCCTC AACGACTAACACAGC TERM 4779 4377985 - 4377968 - GH 78 -9.9 -3.54414 | overlap 4377966 AGCGGTAATCAAAGA GCCACTT TTTA AAGTGGC CTCAACGACTAACAC def 4378798 - 4379310 + | peptide deformylase TERM 4780 4379380 - 4379404 + G 89 -15 -3.17622 | overlap 4379384 GGAACTCCTGATTTT GCAGCGCGCC ATTTA GGCGCGTTGC TCTCTTCTCAACATA TERM 4781 4379384 - 4379400 + G 75 -10.8 -3.40191 | overlap 4379380 CTCCTGATTTTGCAG CGCGCC ATTTA GGCGCG TTGCTCTCTTCTCAA TERM 4782 4379814 - 4379798 - g 79 -8.1 -4.37886 | CTATGCTGCATAAAA TTGAATG TGC CATTCAA CCAGAAGATACCAGT fmt 4379335 - 4380282 + | methionyl-tRNA formyltransferase TERM 4783 4380350 - 4380365 + F 89 -6.8 -5.32944 | CTTCTCCCTTTATTT GCTGGC GTTT GTCAGC TTTTTTGGTTATGAA TERM 4784 4381628 - 4381608 - g 76 -5.3 -4.86731 | opp_overlap 4381603 GCCTGGTAAACAAAA CCTTCCACA TCC TGAGGACGG TGATGGTTTCTTCTA YPN_3829 4380376 - 4381665 + | 16S rRNA methyltransferase B TERM 4785 4382716 - 4382696 - g 74 -3.9 -5.00884 | ATGGGTGCGAAAAAA GCGATGG TACTTAT CCAACGC AGTGCTTACGTCGAT trkA 4381721 - 4383097 + | potassium transporter peripheral membrane component TERM 4786 4383472 - 4383486 + G 74 -3.6 -4.95547 | TTATGGTACATTTAT TCAAAG CAT TTTTGA TTTTGTTATTGTAGC mscL 4383236 - 4383649 + | large-conductance mechanosensitive channel TERM 4787 4383807 - 4383762 - T 100 -17.1 -2.90615 | opp_overlap 4383760 4383799, overlap 4383765 ATTTCTTTTAAATCA GAAGGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCCTCC CAGTTACTACCTTTT TERM 4788 4383804 - 4383765 - T 100 -15.2 -3.60151 | opp_overlap 4383760 4383799, overlap 4383762 TCTTTTAAATCAGAA GGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCC TCCCAGTTACTACCT YPN_3832 4383959 - 4383759 - | hypothetical protein zntR 4384472 - 4384047 - | zinc-responsive transcriptional regulator TERM 4789 4384873 - 4384910 + r 100 -20.1 -3.62032 | opp_overlap 4384885, overlap 4384874 4384885 AAGCTGTATATGGTG GGCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGCG TTTACAGATTACTCT TERM 4790 4384874 - 4384909 + r 100 -23.6 -2.76737 | opp_overlap 4384885, overlap 4384873 4384885 AGCTGTATATGGTGG GCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGC GTTTACAGATTACTC TERM 4791 4384885 - 4384898 + r 100 -9.5 -5.4477 | opp_overlap 4384885, overlap 4384874 4384873 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT TERM 4792 4384898 - 4384885 - R 100 -9.5 -5.40072 | opp_overlap 4384885 4384874 4384873 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT rplQ 4385308 - 4384919 - | 50S ribosomal protein L17 TERM 4793 4385037 - 4385063 + g 71 -11.4 -2.73123 | opp_overlap 4385021 4385034 CGAGTGTAACCACCG GCGCGGCTCGCG AAA CGCGGGCCTAGC TCGTTAAACAGTTTT TERM 4794 4385259 - 4385231 - G 77 -10.4 -3.57246 | gap 1, overlap 4385229 4385249 ATGACGAACCAAAGA GCC-GGCCATGTT ACGG AACATAGCCTGGC GATGGCTGCTGTTAC YPN_3835 4386338 - 4385349 - | DNA-directed RNA polymerase subunit alpha TERM 4795 4385432 - 4385444 + g 73 -3.4 -5.01732 | CGAGCACGTCTTTAA TCTC AGTAA GAGA TTTTTTACCCAGGTT TERM 4796 4386379 - 4386361 - R 77 -10.4 -3.14132 | TCTCTTTGGTACTAA GCTTTACT TGG AGTAAAGC TCGACGATCAGGTGT rpsD 4386984 - 4386364 - | 30S ribosomal protein S4 TERM 4797 4387025 - 4387009 - R 82 -7.9 -4.42851 | opp_overlap 4387008 4387009 CCAACAAACCTAAAA GCAGCGT TAT ACGCGGC GCTTTTTCGGCGGAC YPN_3837 4387404 - 4387015 - | 30S ribosomal protein S11 rpsM 4387777 - 4387421 - | 30S ribosomal protein S13 TERM 4798 4387894 - 4387865 - R 100 -12.3 -4.61868 | gap 1 CAGTCACATACAAAA GATTG-GCTGGCTA ATC TAGCCAGCTCAACC CAACTTTGCAAGAAA secY 4389406 - 4388075 - | preprotein translocase subunit SecY TERM 4799 4388972 - 4388943 - G 79 -7.9 -4.45168 | overlap 4388967 GCGGTAAAATAGAAA GCAAAGCCTGG ATTGATTA CCAGACCTTGC ATCCCAGGCATATTC rplO 4389848 - 4389414 - | 50S ribosomal protein L15 rpmD 4390031 - 4389852 - | 50S ribosomal protein L30 rpsE 4390537 - 4390034 - | 30S ribosomal protein S5 TERM 4800 4390331 - 4390351 + g 70 -4.6 -4.67353 | opp_overlap 4390329, overlap 4390329 AACGTTAATCATAGC GCGACGGG CTTTT TCCATCGC TTTTTGGATCGCTGC rplR 4390905 - 4390552 - | 50S ribosomal protein L18 rplF 4391448 - 4390915 - | 50S ribosomal protein L6 rpsH 4391855 - 4391463 - | 30S ribosomal protein S8 rpsN 4392194 - 4391889 - | 30S ribosomal protein S14 TERM 4801 4392152 - 4392173 + g 77 -8.7 -4.02021 | overlap 4392153 4392155 ATTTGTTAGCTAGTT TCACGCGAA CAAC TTCGCGTGC TTTCATTGATTGCTT TERM 4802 4392153 - 4392172 + g 76 -12.2 -3.00128 | overlap 4392152 4392155 TTTGTTAGCTAGTTT CACGCGAA CAAC TTCGCGTG CTTTCATTGATTGCT rplE 4392747 - 4392208 - | 50S ribosomal protein L5 TERM 4803 4392585 - 4392603 + g 76 -7.4 -4.30987 | opp_overlap 4392584, overlap 4392570 TTGCTGCCAAGTCAG CTGCTGCA TTA TCCAGCAG TTTCTTGTCAGCGAT rplX 4393076 - 4392762 - | 50S ribosomal protein L24 rplN 4393458 - 4393087 - | 50S ribosomal protein L14 TERM 4804 4393615 - 4393589 - R 100 -10.2 -5.24531 | opp_overlap 4393589 4393592 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG TERM 4805 4393589 - 4393615 + r 70 -8 -3.69069 | opp_overlap 4393589, overlap 4393592 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG rpsQ 4393893 - 4393639 - | 30S ribosomal protein S17 YPN_3851 4394084 - 4393893 - | 50S ribosomal protein L29 rplP 4394494 - 4394084 - | 50S ribosomal protein L16 rpsC 4395205 - 4394507 - | 30S ribosomal protein S3 TERM 4806 4395059 - 4395091 + g 74 -10 -3.61654 | overlap 4395060 GCGAGAAACGGAAGC TTTCGCTAATTCCT TAGTC AGGAATTGGCGAAC TTTAAAGTCGCTGTC TERM 4807 4395060 - 4395090 + g 79 -13.5 -2.76671 | overlap 4395059 CGAGAAACGGAAGCT TTCGCTAATTCCT TAGTC AGGAATTGGCGAA CTTTAAAGTCGCTGT rplV 4395555 - 4395223 - | 50S ribosomal protein L22 rpsS 4395848 - 4395570 - | 30S ribosomal protein S19 rplB 4396687 - 4395863 - | 50S ribosomal protein L2 TERM 4808 4396722 - 4396742 + r 80 -9.7 -3.57462 | opp_overlap 4396725, overlap 4396725 CTCTGCGCCGCCGAT GAAGTCCAG ATT CTGGCCTTC TTTCAGGGTGACGTA rplW 4397006 - 4396704 - | 50S ribosomal protein L23 rplD 4397608 - 4397003 - | 50S ribosomal protein L4 TERM 4809 4397576 - 4397588 + g 77 -10.5 -3.54414 | opp_overlap 4397571, overlap 4397575 TTCGGAAACAGTCAG CGCGC CTG GCGCG TCTTTCATTACCAAT rplC 4398254 - 4397625 - | 50S ribosomal protein L3 YPN_3860 4398598 - 4398287 - | 30S ribosomal protein S10 YPN_3861 4399485 - 4399012 - | bacterioferritin, iron storage and detoxification protein YPN_3862 4399770 - 4399564 - | bacterioferritin-associated ferredoxin TERM 4810 4399868 - 4399844 - R 93 -9.9 -4.25056 | opp_overlap 4399847, overlap 4399846 4399847 CACTTTATCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4811 4399866 - 4399846 - R 100 -12.5 -3.72374 | opp_overlap 4399847, overlap 4399844 4399847 CTTTATCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4812 4399847 - 4399865 + r 100 -16 -4.8048 | opp_overlap 4399847 4399846 4399844 TTTATCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4813 4399865 - 4399847 - R 100 -16 -2.82942 | opp_overlap 4399847, overlap 4399846 4399844 TTTATCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPN_3863 4400404 - 4399946 - | transposase for the IS1541 insertion element TERM 4814 4400535 - 4400517 - R 100 -16 -3.07307 | opp_overlap 4400517 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 4815 4400517 - 4400535 + r 100 -16 -4.37092 | opp_overlap 4400517 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 4816 4400572 - 4400557 - R 100 -10.4 -5.55769 | opp_overlap 4400557 GGGCACAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT TERM 4817 4400557 - 4400572 + r 91 -10.4 -4.10953 | opp_overlap 4400557 GGGCACAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT YPN_3864 4401791 - 4400607 - | elongation factor Tu TERM 4818 4401807 - 4401841 + r 72 -9.3 -3.10579 | overlap 4401804 GACTATATTCCTTAC TCTTGTGCTCTCCCA CTAAA TGAGAGAGCACTGGA TCATTGTTTTAAACC YPN_3865 4403972 - 4401864 - | elongation factor G YPN_3866 4404536 - 4404066 - | 30S ribosomal protein S7 rpsL 4405007 - 4404633 - | 30S ribosomal protein S12 YPN_3868 4405432 - 4405145 - | tRNA 2-thiouridine synthesizing protein B YPN_3869 4405817 - 4405452 - | hypothetical protein TERM 4819 4405634 - 4405645 + g 80 -3 -5.30686 | overlap 4405639 AAGTAGCAATATAGT TTCT GGCA AGAA TTTTTTCTGGCTGTT YPN_3870 4406212 - 4405817 - | hypothetical protein YPN_3871 4406934 - 4406212 - | DNA-binding protein TERM 4820 4407157 - 4407134 - R 100 -9.6 -6.22802 | opp_overlap 4407134 GCGCACAAAAAAAAA CCGTCACGAC AATT ATCGTAACGG TTATGAGAAGAGTAT YPN_3872 4407988 - 4407188 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4821 4407350 - 4407364 + g 83 -2.8 -5.41359 | opp_overlap 4407350, overlap 4407335 TGGCGGGATAACCAA GGTG ATTTTGC CACC TTTTTTGATTTGCTT YPN_3873 4408303 - 4408521 + | hypothetical protein TERM 4822 4408726 - 4408694 - T 100 -16.5 -2.87931 | opp_overlap 4408701 4408725, overlap 4408701 GTGATCGCGTACAGA GCAAAAAGCCAGC GATGAAG GCTGGCTTTTTGC TGACGGGGTCAGATA TERM 4823 4408701 - 4408719 + T 81 -7.4 -4.72272 | opp_overlap 4408694 4408701 CGTACAGAGCAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG TERM 4824 4408719 - 4408701 - T 85 -7.4 -4.84527 | opp_overlap 4408701, overlap 4408694 CGTACAGAGCAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG YPN_3874 4409329 - 4408742 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4825 4409303 - 4409314 + g 74 -4.4 -4.85545 | CTGGTAAGCCAGGCT GACT ACCA AGTC TTTTGTTACTTTCAT YPN_3875 4409645 - 4409424 - | hypothetical protein YPN_3876 4411469 - 4409661 - | glutathione-regulated potassium-efflux system protein KefB YPN_3877 4412021 - 4411473 - | glutathione-regulated potassium-efflux system ancillary protein KefG TERM 4826 4412602 - 4412586 - gH 100 -6.5 -5.63103 | overlap 4412587 TGCCAATGAAAAAAA TGATGGC CAT GCCATCG CAACCGTGCACGGTA TERM 4827 4412601 - 4412587 - gH 86 -10 -3.96777 | overlap 4412586 GCCAATGAAAAAAAT GATGGC CAT GCCATC GCAACCGTGCACGGT YPN_3878 4412272 - 4412844 + | hypothetical protein TERM 4828 4413952 - 4413940 - gf 75 -9.1 -3.65199 | opp_overlap 4413947 4413948 AATTCCGCACTCAAA CGCAG CCA CTGCG TAAGCAGATTATGAC YPN_3879 4412805 - 4414190 + | ATPase TERM 4829 4414275 - 4414242 - f 73 -9.7 -3.04263 | opp_overlap 4414264 4414268, overlap 4414244 ATGGCATCGTGAATA TAGTCGTGCGAAT TGAGTTAG AGTCGCACGACTA GAGCGGCGTGATTTT YPN_3880 4414325 - 4415314 + | glycosyl transferase YPN_3881 4415407 - 4416387 + | sugar transferase tauD 4417248 - 4416400 - | taurine dioxygenase YPN_3883 4418099 - 4417245 - | taurine transporter subunit TERM 4830 4417531 - 4417517 - G 79 -7 -4.64846 | overlap 4417519 CCACAAACCATAAAA CCTGCC AAC GGCTGG CACCTAATGCACGGG tauB 4418863 - 4418096 - | taurine transporter ATP-binding subunit TERM 4831 4418534 - 4418554 + g 77 -9 -4.0274 | gap 1 CCGGTTTAGCATTTT CAG-GGCGG TTAC CCGCCGCTG TTCTTTACTCATCCC tauA 4419933 - 4418872 - | taurine transporter substrate binding subunit TERM 4832 4420059 - 4420021 - R 83 -12.1 -2.74597 | opp_overlap 4420028, overlap 4420028 4420032 4420037 CCGAGAGAGAGAGCA GCATAAAGGAATAAA AGAATATTG TTTATTCCTTTATGC GATAACAGATGTACT YPN_3886 4420738 - 4420136 - | ABC-transport protein TERM 4833 4421027 - 4421051 + G 71 -5 -4.58283 | opp_overlap 4421016, overlap 4421016 4421029 AGAAGCCCCGAGTGG TGCTCTTCCA CGGTT TGGAAGGGAA TTTTTACAGCCCTTA YPN_3887 4420840 - 4421820 + | putative hydrolase YPN_3888 4421817 - 4422053 + | hypothetical protein TERM 4834 4422545 - 4422577 + G 72 -4 -4.84311 | gap 1, overlap 4422546 TCCCTGGCACCTTTA C-TCCTTGGGAGCCG CTAC CGGAACCCACGGATG TTTTATTCTATGAAG TERM 4835 4422546 - 4422575 + G 71 -7.7 -4.03793 | overlap 4422545 CCCTGGCACCTTTAC TCCTTGGGAGCCG CTAC CGGAACCCACGGA TGTTTTATTCTATGA TERM 4836 4422887 - 4422923 + G 75 -8.7 -3.90038 | overlap 4422879 CGTTAGACGAAAGTT TCGTTGTGATCCATTTC CGT GGTTTGGATCACATCGA TTTCCCTTATTTGCT YPN_3889 4422202 - 4423071 + | phosphoribulokinase 1 YPN_3890 4423680 - 4423249 - | hypothetical protein TERM 4837 4423615 - 4423585 - G 100 -8.3 -5.3167 | overlap 4423608 GAAAAACAAAGAAAA TGAGGCGACAACA AACAA TGATATCGCCCCA CAGGCAACCGATATT TERM 4838 4423740 - 4423717 - R 93 -8.9 -4.56775 | opp_overlap 4423717 4423738 4423739 ATTTTGGCCTAAAAA CCCATAACC AAACCG GGCTATGGG TGGTTCACCATTTAC YPN_3891 4424159 - 4423752 - | hypothetical protein TERM 4839 4425091 - 4425063 - g 78 -6.2 -4.8048 | gap 2 GGCGGATACTAAAAA TGCTGGAAGATCAA AAC TTGATCT-CC-GCA CACGGTAAAACGATC YPN_3892 4424495 - 4425127 + | cAMP-regulatory protein TERM 4840 4425141 - 4425171 + F 100 -12.7 -4.75063 | gap 1, opp_overlap 4425141 AATTCCCTCTAAAAA CCGGCGTTAA-AGC TGAA GCTATTAGCGCCGG TTTTTCCCGTTTTCT TERM 4841 4425171 - 4425141 - f 100 -10.5 -4.57341 | gap 1, opp_overlap 4425141 AATTCCCTCTAAAAA CCGGCGTTAA-AGC TGAA GCTATTAGCGCCGG TTTTTCCCGTTTTCT TERM 4842 4425801 - 4425789 - g 73 -5.5 -4.66833 | CTTGAACCCGAAAAA GCGAT ACC ACCGC TACTCGATAGACAAC TERM 4843 4426775 - 4426763 - g 71 -5.5 -4.58395 | opp_overlap 4426766 GTTATTGCGTAAAAA TGCCC ATC AGGCA CTGGAGGCTTATCAG YPN_3893 4425213 - 4427333 + | hypothetical protein TERM 4844 4427432 - 4427458 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 4427421, overlap 4427427 4427433 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4845 4427433 - 4427459 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 4427421, overlap 4427427 4427432 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT argD 4428776 - 4427559 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 4846 4428873 - 4428856 - R 76 -2.7 -5.30686 | AATATGCATAAAAAA TCATCCG CAAG CAAATGA TAAATGATGTCATGG YPN_3895 4429484 - 4428909 - | para-aminobenzoate synthase component II YPN_3896 4431268 - 4429727 - | hypothetical protein YPN_3897 4432163 - 4431594 - | peptidyl-prolyl cis-trans isomerase A (rotamase A) TERM 4847 4432382 - 4432350 - H 81 -11.3 -2.8194 | opp_overlap 4432345, overlap 4432341 TAATGAGTCACCACA TCCCAGACTCCAGCA AGA TTCTGGAGTCTGGAT CACGATTCTCTTACT TERM 4848 4432472 - 4432485 + H 84 -5.3 -5.35224 | opp_overlap 4432472 CTAATCTGCTTCAAA TGAGA GCGC TCTCA TTTTGTTTTTCTGCA TERM 4849 4432589 - 4432557 - H 86 -12.2 -3.00498 | gap 1, opp_overlap 4432556 4432555 4432559, overlap 4432559 4432561 GAGACCGTACAGAGA CAGACTCACC-TGAT GAAA ATCATGGTGAGCCTG AATTTATCCACAGAT TERM 4850 4432653 - 4432663 + H 71 -8.2 -3.53811 | ACTGAACTTTATCGC CGGC AGA GCCG TTTGGAGCCCCTACA YPN_3898 4432679 - 4433992 + | glycosyl hydrolase TERM 4851 4434436 - 4434456 + G 74 -2.4 -5.18357 | overlap 4434437 ACGCTGGGGTTGGTG ACCACCTC ATACC GAGGGGGC TTTTTTGGTGCCTTA TERM 4852 4434565 - 4434550 - g 71 -7.6 -4.10179 | GATAATGCAGATAAA GAATGG TTAG CCATTC AGCGGCTGTATAACT YPN_3899 4434241 - 4435227 + | LacI family transcriptional regulator TERM 4853 4435294 - 4435317 + T 100 -12.4 -3.40899 | opp_overlap 4435294 ATTAATTGTTATTAA CGTGGCAAGC CATC GCCTGCCACG TTCTGCTAGCGCATT TERM 4854 4435317 - 4435294 - T 100 -14.6 -3.16921 | opp_overlap 4435294 ATTAATTGTTATTAA CGTGGCAAGC CATC GCCTGCCACG TTCTGCTAGCGCATT YPN_3900 4437400 - 4435340 - | membrane receptor protein TERM 4855 4437135 - 4437112 - G 70 -11 -2.68823 | opp_overlap 4437099, overlap 4437111 4437114 TGGTCCTCAGATAAT CAGTACCGTC ACTG GCCGGTACTG GCTGGCGGGGCACTT YPN_3901 4437886 - 4439070 + | hypothetical protein TERM 4856 4439085 - 4439113 + T 78 -10.2 -3.2827 | overlap 4439087 ATTTATCTGCGTTAC CGCCCTGCCGCC GCCAA GGTGGCAGGGTA TTGATGATTCACTAA TERM 4857 4439087 - 4439111 + T 100 -15 -3.20494 | overlap 4439085 TTATCTGCGTTACCG CCCTGCCGCC GCCAA GGTGGCAGGG TATTGATGATTCACT YPN_3902 4440453 - 4439155 - | cytosine deaminase TERM 4858 4439897 - 4439882 - G 89 -10.4 -4.35524 | CGGGTAAATTCAAAA TGGGGG ATCG CCCCCA CCGCATCCGCACCCA TERM 4859 4440281 - 4440268 - G 76 -8.1 -4.15222 | ATGCGGCTCAATAAA TGGCG GGAG CGCCA AACCGCCCTGCGCAT TERM 4860 4440806 - 4440791 - g 100 -7.6 -5.50723 | TGAGCAAAATAAAAA TTGCCA TCAT TGGCAA CGGCATGGTCGGCCA TERM 4861 4442923 - 4442911 - g 80 -10.5 -3.73072 | opp_overlap 4442910 4442911 AACGGCGGCATGAAA CCGCG TCA CGCGG ATTTACTGGCAGCCG YPN_3903 4440775 - 4443321 + | nitrite reductase nirD 4443318 - 4443644 + | nitrite reductase small subunit YPN_3905 4443846 - 4443715 - | hypothetical protein YPN_3906 4443871 - 4444677 + | nitrite transporter NirC cysG 4444765 - 4446177 + | siroheme synthase TERM 4862 4446287 - 4446310 + T 76 -11 -2.53641 | opp_overlap 4446288, overlap 4446286 GGTTAATGCTGATTA ATGAGGGGGA AATT TCCCCCTCAC ATTACTGATGCGTTG TERM 4863 4446309 - 4446288 - T 100 -14.5 -3.16742 | opp_overlap 4446287 4446286 GTTAATGCTGATTAA TGAGGGGGA AATT TCCCCCTCA CATTACTGATGCGTT YPN_3908 4447372 - 4446332 - | tryptophanyl-tRNA synthetase YPN_3909 4448072 - 4447374 - | phosphoglycolate phosphatase TERM 4864 4447859 - 4447833 - G 70 -8 -3.79882 | overlap 4447856 ATAATAGTGATCAAA CAGCTCGCGG GTCTGTG CCACAAGCTG AGCATTATGTTCACG YPN_3910 4448742 - 4448065 - | ribulose-phosphate 3-epimerase YPN_3911 4449860 - 4449045 - | DNA adenine methylase TERM 4865 4449398 - 4449386 - G 91 -5.5 -5.38054 | opp_overlap 4449386 4449387, overlap 4449380 4449387 GCTCACAAACAAAAA CCGCA TTT TGCGA TTTTTCAGCAAACCA TERM 4866 4449420 - 4449440 + g 82 -3.9 -5.24129 | AGCAAACCAATATAA CTCCGCTTC TGG GAAGTAGGG TTTTTTGTAGCGACC TERM 4867 4449507 - 4449484 - G 73 -9 -3.69094 | AATTCACCACTCAAA TTATAACGAC ACAG GCCGTTATAA CAGTGGCGATTGAGA TERM 4868 4449778 - 4449816 + g 75 -10.2 -3.34398 | opp_overlap 4449775, overlap 4449775 4449779 TCTATCAAACAATCT CCCGCTGGAAGATGGCGT CGT ATGTCATCAACCAGCGGA TATTTCCCACCAGCC TERM 4869 4449779 - 4449815 + g 78 -13.7 -2.60496 | opp_overlap 4449775, overlap 4449778 4449775 CTATCAAACAATCTC CCGCTGGAAGATGGCGT CGT ATGTCATCAACCAGCGG ATATTTCCCACCAGC YPN_3912 4450933 - 4449944 - | hypothetical protein aroB 4452275 - 4451187 - | 3-dehydroquinate synthase aroK 4452853 - 4452332 - | shikimate kinase I YPN_3915 4454326 - 4453202 - | putative outer membrane porin HofQ TERM 4870 4453363 - 4453379 + g 70 -8.7 -3.62418 | AAATCCCGCCCAGCA CGATGGT TTC GCCATCG TTTACAGTAACTTGT YPN_3916 4454361 - 4454750 + | hypothetical protein YPN_3917 4455181 - 4454753 - | hypothetical protein YPN_3918 4455773 - 4455147 - | hypothetical protein YPN_3919 4456326 - 4455721 - | hypothetical protein YPN_3920 4457222 - 4456326 - | hypothetical protein TERM 4871 4456449 - 4456438 - G 71 -7.2 -4.10657 | TGATAGTGCGCAAAA GCCG TTAG CGGC GACCAAGACCGTGTG TERM 4872 4456742 - 4456732 - G 72 -8.2 -3.83323 | GCCATATAACGTAAA GCGC ATG GCGC AATATCAATCACTTG TERM 4873 4456786 - 4456768 - G 75 -8.8 -3.96327 | ACTTGTGAGGATAAA CCCGCCTG TTC CAAGCAGG CTTGCCATTGCTGCA TERM 4874 4458546 - 4458533 - g 70 -2.3 -5.00616 | overlap 4458534 4458535 4458537 CCGGTCCCCAAAAAA GCGAC TGAT GTCGT TCAGCCTGGTCAGCA mrcA 4457318 - 4459897 + | peptidoglycan synthetase TERM 4875 4459953 - 4459930 - T 100 -14 -5.10497 | opp_overlap 4459930 AACTTATCTAAAAAA CCAGATGATC TGAT GATCATCTGG TTTTTTTATAAATTA TERM 4876 4459930 - 4459953 + T 100 -14 -5.66684 | opp_overlap 4459930 AACTTATCTAAAAAA CCAGATGATC TGAT GATCATCTGG TTTTTTTATAAATTA nudE 4460578 - 4460033 - | ADP-ribose diphosphatase NudE TERM 4877 4460274 - 4460264 - G 72 -8.2 -3.89617 | AGCGAGAAAGTCAAA GCGC TCA GCGC CATATCCAACTTCTT TERM 4878 4462568 - 4462557 - g 71 -5.8 -4.28597 | opp_overlap 4462561 ACAATCAATAAACAA CTGC ACCC GCAG GGCTCTGATGCCAGC TERM 4879 4462899 - 4462912 + G 78 -3.7 -5.14563 | opp_overlap 4462897, overlap 4462897 GAAGCGTTGAATAGC CCACC TCCG GGCGG TTTTTTGATCACCAG YPN_3923 4461165 - 4463312 + | membrane protein YPN_3924 4463456 - 4464136 + | hypothetical protein YPN_3925 4464165 - 4464572 + | heat shock protein 15 hslO 4464735 - 4465616 + | Hsp33-like chaperonin TERM 4880 4465630 - 4465657 + F 100 -13.4 -3.82097 | AATCCTCGTAATGCT TAGCCGGGTACC TATT GGTGCCCGGCCA TTTCCTCCGTTTCAC YPN_3927 4465813 - 4467432 + | phosphoenolpyruvate carboxykinase TERM 4881 4467466 - 4467489 + T 100 -6.7 -5.61913 | AGTTTAGCGTTACAG GGGGCAC TTTCAGAATT GTGCCCC TTTTTTCTATTTATT TERM 4882 4467585 - 4467571 - T 84 -11.4 -3.14564 | opp_overlap 4467568 TTATCCCTCCATCAA GCCACC GCT GGTGGC TTGGGCTTCACATCC envZ 4468919 - 4467567 - | osmolarity sensor protein ompR 4469635 - 4468916 - | osmolarity response regulator greB 4470286 - 4469771 - | transcription elongation factor GreB TERM 4883 4470986 - 4470968 - g 74 -11.8 -2.85351 | GCGGGTTAGATGATA TCCAACTG CGT CAGTTGGA AAGCCGTCTGGGGTA TERM 4884 4471086 - 4471063 - g 73 -5.8 -4.49337 | overlap 4471067 GAAGATCAAGGAAAA CTCACCGACC AGCT GGCCGGGGCG ATCAACGCCACCCTA YPN_3931 4470820 - 4473195 + | hypothetical protein TERM 4885 4473215 - 4473270 + F 100 -29.6 -2.90813 | opp_overlap 4473206 4473220, overlap 4473220 TGACAAGGACGGCCA TTAAACTGCCCTCCTCATTATTAGAT TGAT ATCCAATAATGAGGAGGGCAGTTTAA TAATTTAACAAAATA TERM 4886 4473220 - 4473265 + F 100 -25.1 -3.8901 | opp_overlap 4473206 4473220, overlap 4473215 AGGACGGCCATTAAA CTGCCCTCCTCATTATTAGAT TGAT ATCCAATAATGAGGAGGGCAG TTTAATAATTTAACA TERM 4887 4473265 - 4473220 - f 100 -27.3 -3.73953 | opp_overlap 4473220 4473215, overlap 4473206 AGGACGGCCATTAAA CTGCCCTCCTCATTATTAGAT TGAT ATCCAATAATGAGGAGGGCAG TTTAATAATTTAACA feoA 4473719 - 4473946 + | ferrous iron transport protein A TERM 4888 4474470 - 4474458 - g 80 -4.7 -5.11613 | opp_overlap 4474458 ACATTATCTAAAAAA CTGGG TTG CCCGG TCATTCCATTGGTAT feoB 4474038 - 4476353 + | ferrous iron transport protein B TERM 4889 4476335 - 4476349 + F 74 -10 -3.15579 | opp_overlap 4476334 TTGCTGCCGAAGTAG TGGCAG CAA CTGCCA TTGATCACCCATTAG YPN_3934 4476389 - 4476646 + | hypothetical protein TERM 4890 4476646 - 4476669 + T 76 -11 -2.50966 | opp_overlap 4476647, overlap 4476645 4476644 4476642 4476667 TCACGCACACCAATA AGAGATGCCC ATAT GGGCATCTCA ATATGTTGATTCCGT TERM 4891 4476668 - 4476647 - T 100 -14.5 -3.78034 | opp_overlap 4476646 4476645 4476644 4476642 4476667 CACGCACACCAATAA GAGATGCCC ATAT GGGCATCTC AATATGTTGATTCCG YPN_3935 4477053 - 4476784 - | hypothetical protein YPN_3936 4478020 - 4477223 - | biotin biosynthesis protein TERM 4892 4478615 - 4478577 - g 78 -13.1 -2.90763 | gap 1, overlap 4478582 GCTACAGCGTATACA CGCAACGCCGCCG-CAAC AGCA GCTGACGGCGGCACAGCG GCGAAAGAACGTGCG TERM 4893 4478610 - 4478582 - g 74 -11 -3.16177 | gap 1, overlap 4478577 AGCGTATACACGCAA CGCCGCCG-CAAC AGCA GCTGACGGCGGCA CAGCGGCGAAAGAAC YPN_3937 4478086 - 4478787 + | gluconate periplasmic binding protein YPN_3938 4478847 - 4479422 + | putative DNA uptake protein malQ 4481847 - 4479751 - | 4-alpha-glucanotransferase YPN_3940 4483932 - 4481860 - | glycogen/starch/alpha-glucan phosphorylase YPN_3941 4484264 - 4483914 - | hypothetical protein YPN_3942 4484582 - 4485418 + | maltose regulon positive regulatory protein YPN_3943 4486207 - 4485428 - | transposase/IS protein TERM 4894 4486126 - 4486140 + g 77 -11.4 -3.3506 | overlap 4486139 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPN_3944 4487229 - 4486207 - | transposase for insertion sequence IS100 TERM 4895 4487251 - 4487233 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG TERM 4896 4488888 - 4488870 - g 70 -11 -2.55074 | TTGAAGGTGAAGCCA TGGCGCAA CAA CTGCGCCA ACTGATCCAACTCAA TERM 4897 4488985 - 4488995 + G 78 -4 -5.14163 | overlap 4488987 GCATAAATTCGCGCA TTTC GAC GAAA TTTTTGTTGATAAAT YPN_3945 4487288 - 4489252 + | maltose regulon positive regulatory protein glpE 4489627 - 4489956 + | thiosulfate sulfurtransferase YPN_3947 4489974 - 4490810 + | intramembrane serine protease GlpG TERM 4898 4491090 - 4491078 - g 76 -6.2 -4.63218 | overlap 4491079 GTGGTCGGAAGAAAA GGCG CGGAT CGCC CAACGCGTTGCTAGC YPN_3948 4490845 - 4491603 + | DNA-binding transcriptional repressor GlpR TERM 4899 4491796 - 4491740 - g 73 -10.3 -3.30159 | gap 1, opp_overlap 4491745 4491750 4491755, overlap 4491741 4491750 CCAAGGGGGCCATAA GTGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCAA TGAAACACCCTTTTT TERM 4900 4491795 - 4491741 - g 78 -13.8 -2.57881 | gap 1, opp_overlap 4491745 4491750 4491755, overlap 4491740 4491750 CAAGGGGGCCATAAG TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 4901 4491745 - 4491791 + G 89 -15.4 -3.05384 | gap 1, opp_overlap 4491741 4491740 4491750, overlap 4491750 4491755 GGGGCCATAAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4902 4491750 - 4491786 + G 73 -10.3 -3.19192 | gap 1, opp_overlap 4491750 4491741 4491740, overlap 4491745 4491755 CATAAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4903 4491785 - 4491750 - g 79 -12.7 -3.08471 | opp_overlap 4491745 4491750 4491755, overlap 4491741 4491740 CATAAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4904 4491755 - 4491765 + G 76 -5.4 -4.88736 | opp_overlap 4491750 4491741 4491740, overlap 4491750 4491745 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPN_3949 4491667 - 4492311 + | insertion element IS1661 DNA-binding protein TERM 4905 4493131 - 4493113 - g 71 -11 -2.73735 | overlap 4493103 4493101 4493124 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPN_3950 4492365 - 4493150 + | transposase for insertion sequence IS1661 YPN_3951 4494190 - 4493381 - | sugar phosphatase TERM 4906 4494369 - 4494342 - R 93 -4.1 -5.81412 | gap 1 TTCAGGCAAAAAAAA GCCCAGTGGCAG TTTTC CCACC-CTGGAC TTTTTTATCTGGCCA gyrB 4496820 - 4494406 - | DNA gyrase subunit B recF 4498123 - 4496840 - | recombination protein F TERM 4907 4497155 - 4497166 + gr 72 -7.2 -4.03234 | ACCATCGGCCCGAAT GCGG AAAT CCGC TTTATGTGGCCCAAC TERM 4908 4497428 - 4497446 + gr 89 -12.4 -2.7556 | opp_overlap 4497425, overlap 4497430 ATAGCGACTAACCTG GCGCAGCG CGG CGTTGCGC TGCTTGAGTAACCTT TERM 4909 4497430 - 4497449 + gr 84 -11.4 -3.10082 | opp_overlap 4497425, overlap 4497428 AGCGACTAACCTGGC GCAGCGCG GCGT TGCGCTGC TTGAGTAACCTTTTT TERM 4910 4497546 - 4497525 - GR 76 -4.3 -5.0538 | opp_overlap 4497524 CCCCAGTCTAAAAAA GCGCGCC GGAATTTT GGCCCGC CATTTAATAACGTAA YPN_3954 4499198 - 4498098 - | DNA polymerase III subunit beta dnaA 4500591 - 4499203 - | chromosomal replication initiation protein TERM 4911 4501259 - 4501273 + H 75 -7.2 -4.29139 | AGCAGCCAAACGCGT TTACTG AAT CAGTAA TTATTTTAAGTTTAG rpmH 4501301 - 4501441 + | 50S ribosomal protein L34 rnpA 4501460 - 4501819 + | ribonuclease P TERM 4912 4501821 - 4501857 + GF 100 -16.7 -3.14211 | CTCCCGCATCCTGAT CGGGCTGATTAGGGGCT ATC AGCTCGTAATCAGTCCG TTGCTGGGGCCGCGT YPN_3958 4501783 - 4502040 + | hypothetical protein TERM 4913 4502204 - 4502188 - g 70 -9.3 -3.6053 | overlap 4502184 CCGGTGATAAAGCAA GCCAGGC TGT GCCAGGC AGCGGTCAGGGTCAA TERM 4914 4503005 - 4502989 - g 82 -6.5 -4.79955 | AGATTCAGAATAAAA TGGCGGA AAT TGCGCCA CATCTGGACCTGACT TERM 4915 4503669 - 4503651 - g 73 -5.9 -4.56597 | CGTGGTCTGGAAAAA CGTGGCT TACAC AGCCGCG AGAAGAAAAAATAAC YPN_3959 4502043 - 4503683 + | putative inner membrane protein translocase component YidC TERM 4916 4503708 - 4503732 + F 100 -15.1 -4.40561 | overlap 4503705 ATAATCATGAGTATT TAGGGCGGTCA ATA TGACCGCCTTA TTCTTTTTACAGAAG TERM 4917 4504563 - 4504585 + G 71 -7.7 -4.07568 | opp_overlap 4504563, overlap 4504565 GGCGATTGTAACGGA TATCGCGGG CACCA CCCGTGATG TTTTACGGGAACACA trmE 4503826 - 4505190 + | tRNA modification GTPase TrmE TERM 4918 4505401 - 4505388 - g 73 -5.9 -4.4891 | opp_overlap 4505383 4505388 CCCATGATTATAAAA CCACG TGTA CGCGG CTTTATCTGTGTGAC TERM 4919 4505573 - 4505589 + G 72 -3.6 -4.86731 | AGCATTTGGTTGTGG CGCCGA TACGC TGGGCG TTTTCTTTGAACGCC TERM 4920 4505710 - 4505695 - g 73 -5.4 -4.65895 | opp_overlap 4505695 GCTTGTACGCAAAAA GCATCA ACGG CGATGC GTTCTCTGATGAGAT YPN_3961 4505376 - 4506575 + | trans-2-enoyl-CoA reductase TERM 4921 4506589 - 4506633 + T 78 -9.3 -3.73534 | opp_overlap 4506598, overlap 4506591 4506598 AAGCTCCGGTTTATT GCTCAATAACCTGCTGCGTCA CTA TCACGCAGCAGGTTGATCATC TTCTTACTGGGGTTA TERM 4922 4506591 - 4506631 + T 80 -10.5 -3.44552 | opp_overlap 4506598, overlap 4506589 4506598 GCTCCGGTTTATTGC TCAATAACCTGCTGCGTCA CTA TCACGCAGCAGGTTGATCA TCTTCTTACTGGGGT TERM 4923 4506624 - 4506598 - T 100 -15.2 -3.62597 | opp_overlap 4506591 4506589 4506598 TTTATTGCTCAATAA CCTGCTGCGTCA CTA TCACGCAGCAGG TTGATCATCTTCTTA TERM 4924 4506598 - 4506624 + T 100 -15.2 -3.30452 | opp_overlap 4506598, overlap 4506591 4506589 TTTATTGCTCAATAA CCTGCTGCGTCA CTA TCACGCAGCAGG TTGATCATCTTCTTA YPN_3962 4507324 - 4507043 - | hypothetical protein YPN_3963 4508006 - 4507386 - | hypothetical protein YPN_3964 4509936 - 4508551 - | xanthine/uracil permease family protein TERM 4925 4508984 - 4508969 - G 78 -6 -4.75219 | GAAGTACCAATAAAA GCACCG GCAA CGGAGC TGATACTGTCCACAT TERM 4926 4509339 - 4509314 - G 76 -6.1 -4.73677 | overlap 4509316 GCGATAATAAAGAAA CCCAGTGCACC CAAC AGTACACTGTG AGAGGTCAGATTACC TERM 4927 4509944 - 4509959 + H 75 -3.2 -5.19916 | AAAATCATTTGTTTA GAGCGT GATC ACACTC TTTTTTACCTCTTTT TERM 4928 4510190 - 4510164 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 4510173, overlap 4510165 4510180 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4929 4510191 - 4510165 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 4510173, overlap 4510164 4510180 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4930 4510902 - 4510917 + G 87 -8.2 -4.75472 | overlap 4510892 4510893 CCAGGCCGGGATTGC CGCCGG TATT CCGGTG TTTTATTACTGTGCC YPN_3965 4510372 - 4511040 + | 6-phosphogluconate phosphatase YPN_3966 4511830 - 4511075 - | amino acid transport system permease TERM 4931 4511727 - 4511707 - G 74 -11.1 -3.0395 | ACACAGTGCCTAATA CGGCTGAGG CTA CCCCAGCCA TGATACTGATCACCA YPN_3967 4512569 - 4511832 - | ABC transporter permease YPN_3968 4513606 - 4512752 - | periplasmic solute-binding protein YPN_3969 4514497 - 4513826 - | hypothetical protein TERM 4932 4514783 - 4514759 - R 100 -7.8 -5.626 | GAGTGGATAAAAAAA CCGGTCAAAC GAGTA GGCTGACCGG GGTTAAATATTATTT YPN_3970 4515515 - 4514793 - | transcriptional regulator PhoU YPN_3971 4516379 - 4515603 - | phosphate transporter subunit pstA 4517347 - 4516460 - | phosphate transporter permease subunit pstC 4518320 - 4517349 - | phosphate transporter permease subunit YPN_3974 4519574 - 4518534 - | phosphate transporter subunit TERM 4933 4520009 - 4519992 - R 100 -9.1 -5.61913 | opp_overlap 4519992 AATAAAGACAAAAAA GCCGACA AATT TGCCGGC TTTCGTTAATACGCT YPN_3975 4521886 - 4520057 - | D-fructose-6-phosphate amidotransferase glmU 4523457 - 4522087 - | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 4934 4522709 - 4522682 - G 71 -5.4 -4.54727 | CCGCGCAAATCAAAA CGGGAGGGATCC AATA GCATCACGCCCG CTAACAATAATTTTT TERM 4935 4522883 - 4522873 - G 71 -5.4 -4.55287 | GTCAGTGATATAAAA CTCA CCT TGAG CATTATTATTATCCA TERM 4936 4523100 - 4523077 - G 70 -8.8 -3.63515 | TTTTACTGTCAACAA GCCAATCCCG CCCT CGGGCTTAGC GGCCAGCAGACGTTG TERM 4937 4523616 - 4523633 + r 91 -4.8 -5.61596 | AAAAGTGTCGGTGAT CGGCGA CGTTTT TTGCCG TTTTTTTGTCAAAAT TERM 4938 4523728 - 4523695 - R 100 -10.6 -4.57353 | gap 1, opp_overlap 4523694 4523695 TTTTACGACAGAAAA CAAGGATTATCCGAA AGAAA TTCG-ATAATCCTTG CTTATGATTTATTGA TERM 4939 4523695 - 4523728 + r 75 -10.6 -2.80654 | gap 1, opp_overlap 4523695, overlap 4523694 TTTTACGACAGAAAA CAAGGATTATCCGAA AGAAA TTCG-ATAATCCTTG CTTATGATTTATTGA TERM 4940 4523929 - 4523954 + r 93 -11.9 -3.62476 | opp_overlap 4523929 ATAAGTATTAAAAAA TGCCAGTCAGT TTTC ACCGACTGGCA TTCTATCGTTACTTA TERM 4941 4523954 - 4523929 - R 100 -14.1 -5.22794 | opp_overlap 4523929 ATAAGTATTAAAAAA TGCCAGTCAGT TTTC ACCGACTGGCA TTCTATCGTTACTTA atpC 4524491 - 4524078 - | F0F1 ATP synthase subunit epsilon YPN_3978 4525904 - 4524522 - | F0F1 ATP synthase subunit beta YPN_3979 4526923 - 4526060 - | F0F1 ATP synthase subunit gamma TERM 4942 4526156 - 4526179 + g 70 -8 -3.76402 | CAGCTCTTTGATCAG GCTACCGCCG TTAT CGGTGGCGGC TTTCATCGCTACCAT TERM 4943 4526977 - 4526947 - R 89 -12.7 -2.82516 | gap 1, overlap 4526972 CTCCTCATTACCAGA CGG-CCTGCTTTCC TAAC GAAAAGCAGGACCG CATAGCGTTACCAGG YPN_3980 4528526 - 4526985 - | F0F1 ATP synthase subunit alpha YPN_3981 4529074 - 4528541 - | F0F1 ATP synthase subunit delta YPN_3982 4529559 - 4529089 - | F0F1 ATP synthase subunit B YPN_3983 4529860 - 4529621 - | F0F1 ATP synthase subunit C YPN_3984 4530734 - 4529910 - | F0F1 ATP synthase subunit A TERM 4944 4530412 - 4530392 - G 76 -6.1 -4.71426 | TGTTCATCAATAAAA CCCAAACAA AGA CTGTTAGGG CTAATGGTGCGATGA YPN_3985 4531157 - 4530774 - | F0F1 ATP synthase subunit I gidB 4532444 - 4531824 - | glucose-inhibited division protein B YPN_3987 4534479 - 4532590 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA