TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.513635 %AT, 3985486 nt, 33440 terms. Intergenic: 0.586796 %AT, H2T: 599003 nt, 4955 terms; T2T: 176792 nt, 3532 terms; H2H: 275640 nt, 3691 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|153930562|ref|NC_009704.1| Yersinia pseudotuberculosis IP 31758 plasmid_59kb, complete sequence (length 58679) YpsIP31758_A0041 1556 - 519 - | hypothetical protein TERM 1 669 - 685 + g 83 -3.8 -5.41746 | AGTTTCATACGGTGT TAAAGA TGCTT TCTTTA TTTTTTTAGGCGCTT YpsIP31758_A0042 2138 - 1836 - | RelE/ParE family plasmid stabilization system protein YpsIP31758_A0043 2416 - 2126 - | hypothetical protein TERM 2 2678 - 2653 - R 85 -4.1 -5.4588 | opp_overlap 2655 2657, overlap 2646 2655 TAAAATTACAAAAAA CAGATCAAGAT CTAC ATTTTGATCTA TTGCGTCCACATTTG TERM 3 2907 - 2892 - R 74 -10.4 -2.64595 | overlap 2891 AATTGCTATCATAAT TGCGGC CGGC GCCGCA GTTGGCCAACACCGA TERM 4 3359 - 3324 - R 76 -9.2 -3.52192 | opp_overlap 3319 3327 3330, overlap 3325 3327 3330 TTTAACTTGAGATAA TTATAACACTTGTGTT ATAT AACTCAAGTGTTATAT ATGACTTTTAAAGAT TERM 5 3358 - 3325 - R 88 -12.7 -2.70994 | opp_overlap 3319 3327 3330, overlap 3324 3327 3330 TTAACTTGAGATAAT TATAACACTTGTGTT ATAT AACTCAAGTGTTATA TATGACTTTTAAAGA TERM 6 3356 - 3327 - R 77 -10.9 -2.89565 | opp_overlap 3327 3319 3330, overlap 3325 3324 3330 AACTTGAGATAATTA TAACACTTGTGTT ATAT AACTCAAGTGTTA TATATGACTTTTAAA TERM 7 3327 - 3356 + r 79 -10.9 -3.00786 | opp_overlap 3325 3324 3327 3330, overlap 3319 3330 AACTTGAGATAATTA TAACACTTGTGTT ATAT AACTCAAGTGTTA TATATGACTTTTAAA TERM 8 3330 - 3353 + r 73 -8.2 -3.63656 | opp_overlap 3327 3325 3324 3330, overlap 3327 3319 TTGAGATAATTATAA CACTTGTGTT ATAT AACTCAAGTG TTATATATGACTTTT TERM 9 3353 - 3330 - R 73 -8.2 -3.59023 | opp_overlap 3330 3327 3319, overlap 3327 3325 3324 TTGAGATAATTATAA CACTTGTGTT ATAT AACTCAAGTG TTATATATGACTTTT YpsIP31758_A0044 3650 - 3354 - | hypothetical protein TERM 10 3478 - 3491 + g 73 -3.7 -4.91712 | ATCGTCTTAATTCCC GCTGC TTTC GCTGC TTTTTCTCGATTACC TERM 11 3900 - 3885 - R 100 -9 -5.4505 | opp_overlap 3882 3885 TTTTTCAATAAAAAA GCTCAC AGGA GTGAGC TAATTCATAACTTAT YpsIP31758_A0045 4839 - 3928 - | hypothetical protein TERM 12 5078 - 5100 + H 71 -7 -4.19024 | opp_overlap 5078, overlap 5074 AACCTCTTCAAGTAA GGACTATGCT TAT AGTTTAGTCC TTTCTATATCATTTG TERM 13 5332 - 5362 + H 82 -8.4 -4.39426 | overlap 5334 ACCGATTTGTTGATT TTTTGGGGAAATTT GTA AGTTTTCCCCAAGA TTTTATGCGGATGTA YpsIP31758_A0046 5634 - 6002 + | conjugal transfer protein TrbA TERM 14 6050 - 6034 - g 74 -9.4 -3.68827 | opp_overlap 6034 TATGTACCAGCTAAA GCCTCC AATAG GGAGGC TTTTTTATTATCATA TERM 15 6034 - 6050 + G 100 -9.4 -5.58179 | opp_overlap 6034 TATGTACCAGCTAAA GCCTCC AATAG GGAGGC TTTTTTATTATCATA TERM 16 6817 - 6801 - g 71 -4.4 -4.7373 | opp_overlap 6813, overlap 6809 CGATGTTACTAAAAA CCACAT TACGT ATGCGG CCAGACCGCATTCTG YpsIP31758_A0047 6020 - 7120 + | conjugal transfer protein TrbB TERM 17 7159 - 7207 + G 74 -9.8 -3.49475 | opp_overlap 7168 7173, overlap 7172 CATGCCGAGTATCAA CATTAGTAACAAAACAATGCTT TTGTT AGGCATTGCTTTGCTGCTGATG TTATCTACACATCCG TERM 18 7193 - 7173 - g 71 -4 -4.74215 | opp_overlap 7172 7159, overlap 7168 ACATTAGTAACAAAA CAATGCTT TTGTT AGGCATTG CTTTGCTGCTGATGT YpsIP31758_A0048 7133 - 7513 + | conjugal transfer protein TrbC YpsIP31758_A0049 7516 - 7830 + | conjugal transfer protein TrbD YpsIP31758_A0050 7823 - 10360 + | conjugal transfer protein TrbE TERM 19 10405 - 10391 - g 100 -7.2 -5.88476 | opp_overlap 10391 AAAAGAAAGAAAAAA CTTTAG CGG CTAAAG TTTCTCAAACCGATA YpsIP31758_A0051 10357 - 11079 + | conjugal transfer protein TrbF YpsIP31758_A0052 11094 - 11981 + | conjugal transfer protein TrbG YpsIP31758_A0053 11984 - 12433 + | conjugal transfer protein TrbH TERM 20 13072 - 13062 - g 79 -3.2 -5.24129 | overlap 13064 TCGGCCTACAAAAAA CGCT TAC AGCA ATTGCAAGGTAATGG YpsIP31758_A0054 12438 - 13817 + | conjugal transfer protein TrbI YpsIP31758_A0055 13835 - 14611 + | conjugal transfer protein TrbJ YpsIP31758_A0056 14774 - 16195 + | conjugal transfer protein TrbL/VirB6 TERM 21 16401 - 16391 - g 73 -5.4 -4.59853 | GCAATGGGTCAAAAA TACC AAC GGTA CTCACGATGTTGGCC YpsIP31758_A0057 16248 - 16868 + | conjugal transfer protein TrbN YpsIP31758_A0058 16987 - 17466 + | transcriptional activator TERM 22 17524 - 17570 + G 76 -8.3 -4.0162 | gap 1, opp_overlap 17526, overlap 17526 ATTCATCATGGTAGC AATCATTA-TGTCATCATCAGT ATAC GCTGATGATGGCAGTGATGATA TTTATCGTATAAGCG TERM 23 17526 - 17568 + G 79 -10.9 -3.60104 | gap 1, opp_overlap 17526, overlap 17524 TCATCATGGTAGCAA TCATTA-TGTCATCATCAGT ATAC GCTGATGATGGCAGTGATGA TATTTATCGTATAAG TERM 24 18025 - 18010 - g 90 -2.6 -5.81622 | gap 1 ACAAAATGAAAAAAA CAA-GCA AAC TGCATTG ATTACACCAAATGTT YpsIP31758_A0059 17489 - 18421 + | putative secretion system protein PilL TERM 25 19137 - 19125 - g 83 -4.8 -5.25656 | AAAATCAGCAAAAAA GTGG CTTAT CCAC TCAAAGCGGAAGCAA YpsIP31758_A0060 18434 - 20140 + | PilN family type IV pilus biogenesis protein YpsIP31758_A0061 20150 - 21484 + | putative type IV secretion system protein PilO2 TERM 26 21690 - 21652 - g 75 -5.2 -4.81359 | overlap 21653 21654 AAGCTAAAGATAAAA GCGGTGGAACAATGCCGA TTG TCGGGAGTGTTGCACCAG GGGTTAACTCCGCAC pilP2 21471 - 21914 + | type IV pilus biogenesis/secretion protein PilP YpsIP31758_A0063 21911 - 23443 + | putative type IV secretion system protein PilQ YpsIP31758_A0064 23436 - 24500 + | putative type IV secretion system protein PilR YpsIP31758_A0065 24517 - 25023 + | putative type IV secretion system protein PilS2 TERM 27 25142 - 25120 - g 90 -14.9 -2.86591 | overlap 25111 ATAAAAGGCATGATA GGGGCAAGC AATAG GCTTGCCCC TGCGCCAGAAATATT TERM 28 25374 - 25391 + G 77 -8.5 -4.29472 | TATAAAGCTCATCAG CCAGAAT AATA ATTCTGG TTTAGTTTTAGTTTC YpsIP31758_A0066 25039 - 25992 + | type IV secretion system protein YpsIP31758_A0001 26005 - 27261 + | shufflon protein, N-terminal constant region TERM 29 27277 - 27299 + F 77 -10.6 -3.1917 | overlap 27275 27273 27279 TTAGTCCGTTATCCG CACCGACACA ACC TGTGTCGGTA TATATTCCTATTACT TERM 30 27279 - 27297 + F 95 -13.2 -3.14978 | overlap 27277 27275 27273 AGTCCGTTATCCGCA CCGACACA ACC TGTGTCGG TATATATTCCTATTA YpsIP31758_A0002 27495 - 27896 + | hypothetical protein YpsIP31758_A0003 27901 - 28332 + | type IV pilus biogenesis protein PilM YpsIP31758_A0004 28344 - 28967 + | hypothetical protein YpsIP31758_A0005 28986 - 29492 + | transglycosylase SLT domain-containing protein YpsIP31758_A0006 29517 - 30002 + | hypothetical protein YpsIP31758_A0007 30036 - 30335 + | hypothetical protein YpsIP31758_A0008 30468 - 30716 + | hypothetical protein TERM 31 30737 - 30754 + F 86 -9.1 -4.30719 | opp_overlap 30737 30736 CTTACCATAGAAAAT GGCCCGA TAAC TTGGGCC TTTCTTCTAAAAGAC YpsIP31758_A0009 30797 - 31144 + | single-strand binding protein family protein TERM 32 31754 - 31781 + T 100 -6.3 -6.09133 | opp_overlap 31754 ATTACTAATAATTAA GCCCAAATTCA CAGTTC TGGATTCGGGC TTTTTTTTTAAACTA TERM 33 32106 - 32125 + T 76 -7 -4.49316 | opp_overlap 32098 32107 32108, overlap 32107 32108 ACGAAATGCATAGTA ATGCCGCC TTAC GGCGGCGA TTTGTTATTCATGCT TERM 34 32107 - 32124 + T 78 -10.5 -3.28505 | opp_overlap 32098 32107 32108, overlap 32106 32108 CGAAATGCATAGTAA TGCCGCC TTAC GGCGGCG ATTTGTTATTCATGC TERM 35 32108 - 32123 + T 81 -11.8 -2.5638 | opp_overlap 32098 32108 32107, overlap 32107 32106 GAAATGCATAGTAAT GCCGCC TTAC GGCGGC GATTTGTTATTCATG TERM 36 32123 - 32108 - T 83 -11.8 -2.58236 | opp_overlap 32107 32106 32108, overlap 32098 32107 GAAATGCATAGTAAT GCCGCC TTAC GGCGGC GATTTGTTATTCATG YpsIP31758_A0010 32799 - 32134 - | hypothetical protein YpsIP31758_A0011 32982 - 32812 - | hypothetical protein YpsIP31758_A0012 33378 - 33923 + | hypothetical protein TERM 37 33987 - 33959 - f 89 -3.8 -5.61596 | gap 1, opp_overlap 33960 33976 33977, overlap 33960 ATTTGGATAAAAAAA GTGTACAGCCGGT ATTC ACCGGCTGG-CAT TCGCTAGCCGCCTTT TERM 38 33986 - 33960 - f 72 -7.3 -3.95873 | gap 1, opp_overlap 33960 33976 33977, overlap 33959 TTTGGATAAAAAAAG TGTACAGCCGGT ATTC ACCGGCTGG-CA TTCGCTAGCCGCCTT TERM 39 33960 - 33986 + F 71 -9.5 -3.05715 | gap 1, opp_overlap 33959 33960, overlap 33976 33977 TTTGGATAAAAAAAG TGTACAGCCGGT ATTC ACCGGCTG-GCA TTCGCTAGCCGCCTT YpsIP31758_A0013 34385 - 34684 + | hypothetical protein TERM 40 34722 - 34738 + F 90 -7.2 -5.1287 | opp_overlap 34717 34722 AATGATTTAATGAAC GCCTCG TTAAT CGGGGC TTTTTTACGTCTGCG YpsIP31758_A0014 35038 - 35337 + | hypothetical protein YpsIP31758_A0015 35377 - 35859 + | type IV pilus biogenesis protein PilT TERM 41 35984 - 35969 - T 91 -7.5 -5.30339 | opp_overlap 35968 35969 ACCAAAACACAAAAA CCGCC CAAAAT GGCGG CTTTACTGATTAAAG YpsIP31758_A0016 36691 - 36026 - | surface exclusion protien TERM 42 36649 - 36660 + g 70 -2.2 -4.99972 | CGATTGCGGCAATGA GTAC AATG GTGC TTTTTAATATTTTAT YpsIP31758_A0017 37538 - 36756 - | hypothetical protein YpsIP31758_A0018 38265 - 37549 - | hypothetical protein TERM 43 38418 - 38465 + H 100 -11.2 -5.29385 | opp_overlap 38422 38424 38427, overlap 38420 38427 TTGCATACCGCCAGA GACAGACAATCGGGGCGTGTCG GGCG CGTTACGCTCCGATTGTCACCC TTTTTTACTTGGCTT TERM 44 38420 - 38463 + H 89 -12.4 -2.84518 | opp_overlap 38422 38424 38427, overlap 38418 38427 GCATACCGCCAGAGA CAGACAATCGGGGCGTGTCG GGCG CGTTACGCTCCGATTGTCAC CCTTTTTTACTTGGC TERM 45 38461 - 38422 - H 100 -15 -2.99649 | opp_overlap 38420 38418 38427, overlap 38424 38427 ATACCGCCAGAGACA GACAATCGGGGCGTGTCG GGCG CGTTACGCTCCGATTGTC ACCCTTTTTTACTTG TERM 46 38459 - 38424 - H 86 -11.8 -3.052 | opp_overlap 38420 38418 38427, overlap 38422 38427 ACCGCCAGAGACAGA CAATCGGGGCGTGTCG GGCG CGTTACGCTCCGATTG TCACCCTTTTTTACT TERM 47 38456 - 38427 - H 70 -7.7 -3.66896 | opp_overlap 38420 38418 38427, overlap 38424 38422 GCCAGAGACAGACAA TCGGGGCGTGTCG GGCG CGTTACGCTCCGA TTGTCACCCTTTTTT TERM 48 38427 - 38456 + H 89 -12.1 -3.38191 | opp_overlap 38427 38424 38422, overlap 38420 38418 GCCAGAGACAGACAA TCGGGGCGTGTCG GGCG CGTTACGCTCCGA TTGTCACCCTTTTTT TERM 49 38940 - 38927 - g 78 -5.9 -4.68506 | overlap 38930 AAGCAACGGCAAAAA GGACG GGGC CGCCC GAAAGAGGGCCAGAC YpsIP31758_A0019 38579 - 39370 + | putative integrase/resolvase TERM 50 39650 - 39634 - g 100 -10.8 -4.58076 | opp_overlap 39634 ATAACTCATATAAAA GCCCGG AAAAA CCGGGC TTGATACTACCAATA TERM 51 39634 - 39650 + G 76 -10.8 -3.21416 | opp_overlap 39634 ATAACTCATATAAAA GCCCGG AAAAA CCGGGC TTGATACTACCAATA YpsIP31758_A0021 39534 - 39689 + | hypothetical protein TERM 52 39682 - 39694 + T 71 -4.1 -4.88293 | ATCGACAGTTAACGG CTCAT TGA GTGAG TTTCTTTTTGAGCTT YpsIP31758_A0020 42635 - 39675 - | DNA primase TraC YpsIP31758_A0022 42861 - 42628 - | putative conjugal transfer protein TraD YpsIP31758_A0023 44906 - 42867 - | DNA topoisomerase III TERM 53 44035 - 44022 - G 70 -2.4 -4.99645 | opp_overlap 44022 ACTTGATAAAGAAAA TCCA AAAGGG TGGA GCTTTTTCTGTGGAG YpsIP31758_A0024 45466 - 44942 - | conjugal transfer protein TraF YpsIP31758_A0025 47400 - 45463 - | conjugal transfer protein TraG TERM 54 46208 - 46222 + g 74 -9.2 -3.65036 | opp_overlap 46207 ATGACACGGACAAGT GGCCTG AGA CGGGCC TTATCGTTTGGTTGG TERM 55 46870 - 46858 - G 70 -7.7 -3.84406 | TGGCCATGATAATAA GGTTG GGA CAACC AGACCGACGCCTTTA TERM 56 47194 - 47165 - G 73 -7.2 -4.25256 | overlap 47162 GCGGTAGTAAAATAA GTGGGATATATG TCATGC CACTTATCCCAC CATGTATAAATGGCC YpsIP31758_A0026 50018 - 47397 - | conjugal transfer protein TraI TERM 57 47975 - 47998 + g 71 -4 -4.6955 | gap 1 GTGGCCGTATATCTC GAC-TTTTATC ATC GATAGAACGTC TTTTATGTATTACTC TERM 58 48362 - 48408 + g 73 -9.7 -3.43315 | gap 1, opp_overlap 48369, overlap 48368 48369 48398 TGGCTTGTTGGGACA TAACAAATT-GACGACGCAGCT CTAA ATCTGTGTCGTCAAATTTGATA TTCAGTTTTGCTTTA TERM 59 48368 - 48401 + g 76 -8.9 -3.95456 | opp_overlap 48369, overlap 48362 48369 48398 GTTGGGACATAACAA ATTGACGACGCAGCT CTAA ATCTGTGTCGTCAAA TTTGATATTCAGTTT TERM 60 48369 - 48400 + g 81 -12.4 -2.96189 | opp_overlap 48369, overlap 48368 48362 48398 TTGGGACATAACAAA TTGACGACGCAGCT CTAA ATCTGTGTCGTCAA ATTTGATATTCAGTT TERM 61 48400 - 48369 - G 90 -10.2 -4.38927 | opp_overlap 48369 48368 48362 48398 TTGGGACATAACAAA TTGACGACGCAGCT CTAA ATCTGTGTCGTCAA ATTTGATATTCAGTT YpsIP31758_A0027 50412 - 50056 - | conjugal transfer protein TraJ TERM 62 50350 - 50376 + g 74 -2.9 -5.06116 | gap 1, opp_overlap 50350 TTCCTCATCAGGTAA CACCGGC-ACTC TCAA GTGTCGCCCGTG TTTTCTTGTTATTTT YpsIP31758_A0028 50554 - 50435 - | hypothetical protein TERM 63 50559 - 50509 - G 74 -9.1 -3.62597 | gap 1, opp_overlap 50511 50514, overlap 50513 50520 50522 50529 CGGAGGCGCGAATAA GGGAGAGTGAAGATAGATAACCGG CTTG CCGGTTAGCTAACTTCAC-CTATC TTGCCCTGTTTTAAC TERM 64 50511 - 50557 + g 73 -10.3 -3.12289 | gap 1, opp_overlap 50509 50513 50520 50522 50529, overlap 50514 GAGGCGCGAATAAGG GAGAGTGAAGATAGATAACCGG CTTG CCGGTTAGCTAACTTCAC-CTA TCTTGCCCTGTTTTA TERM 65 50555 - 50513 - G 81 -12.9 -2.6563 | gap 1, opp_overlap 50511 50514, overlap 50509 50520 50522 50529 GGCGCGAATAAGGGA GAGTGAAGATAGATAACCGG CTTG CCGGTTAGCTAACTTCAC-C TATCTTGCCCTGTTT TERM 66 50514 - 50555 + g 84 -13.1 -3.10901 | opp_overlap 50513 50509 50520 50522 50529, overlap 50511 GCGCGAATAAGGGAG AGTGAAGATAGATAACCGG CTTG CCGGTTAGCTAACTTCACC TATCTTGCCCTGTTT TERM 67 50547 - 50522 - G 73 -10.5 -3.13071 | opp_overlap 50514 50511, overlap 50520 50513 50509 50529 AAGGGAGAGTGAAGA TAGATAACCGG CTTG CCGGTTAGCTA ACTTCACCTATCTTG YpsIP31758_A0029 50746 - 51123 + | conjugal transfer protein TraK YpsIP31758_A0030 51135 - 51863 + | conjugal transfer protein TraL YpsIP31758_A0031 51860 - 52300 + | putative conjugal transfer protein TraM TERM 68 52338 - 52363 + F 100 -10.5 -5.38326 | opp_overlap 52338, overlap 52330 CATATTCTCCTTAAA GGGTAATTAGC CTGT GCCAATTACCC TTTTTATTTAATTCA TERM 69 52363 - 52338 - f 100 -12.7 -3.54129 | opp_overlap 52330 52338 CATATTCTCCTTAAA GGGTAATTAGC CTGT GCCAATTACCC TTTTTATTTAATTCA TERM 70 52458 - 52429 - f 79 -10.7 -3.18735 | opp_overlap 52428 52429, overlap 52430 GCAAGACCGCAGCAA GCGCCCCGTACAC AAAA GTATACGGGGCAA ATATTTTACAAAGAA TERM 71 52457 - 52430 - f 93 -14.2 -2.5092 | opp_overlap 52429 52428, overlap 52429 CAAGACCGCAGCAAG CGCCCCGTACAC AAAA GTATACGGGGCA AATATTTTACAAAGA TERM 72 52600 - 52617 + F 73 -5.5 -4.58424 | opp_overlap 52615, overlap 52615 CTCATTTCATCCCAA TCCTGCG TCAA CTCAGGA TTTTCTATCCTCATC TERM 73 53620 - 53606 - f 81 -7.1 -4.60713 | opp_overlap 53613 TAAAACATCACAAAA GCGCA ATTAA TGCGC TTAAAGCATATTATT TERM 74 53647 - 53663 + F 83 -10.9 -3.56325 | opp_overlap 53647 TATTTAATTGCTAAA TAGGCGA AAT TCGCCTA TTATAATTATACGGG TERM 75 53663 - 53647 - f 84 -10.9 -3.61268 | opp_overlap 53647 TATTTAATTGCTAAA TAGGCGA AAT TCGCCTA TTATAATTATACGGG YpsIP31758_A0033 53734 - 54021 + | hypothetical protein TERM 76 54050 - 54025 - f 100 -15.5 -3.0264 | overlap 54028 AAACTGCGCTGAAGA TAAGGAGGGGG TTAA CCCCCTCCCTA CAGCCTGATAAACGT TERM 77 54047 - 54028 - f 100 -15 -3.65812 | overlap 54025 CTGCGCTGAAGATAA GGAGGGGG TTAA CCCCCTCC CTACAGCCTGATAAA TERM 78 54268 - 54286 + F 70 -9.5 -2.74144 | opp_overlap 54262, overlap 54267 TCTAACTAACCCCTC CCCCGTC CCTGT GGCGGGG CTTTGACCATAAAGA YpsIP31758_A0034 54309 - 54728 + | hypothetical protein TERM 79 54747 - 54733 - f 75 -7.1 -4.29227 | opp_overlap 54709 54729 54728 TTAATGATTAATAAA GCGCA TATTT TGCGC TTAAGGTTATTTTAT YpsIP31758_A0035 54761 - 55000 + | hypothetical protein TERM 80 55019 - 55002 - T 73 -8.5 -3.64103 | overlap 55014 TACCTAGAGTTTAAA TCGCTAT CAAA ATAGCGA CCGGCTAGCAGCTGC YpsIP31758_A0036 55408 - 55088 - | hypothetical protein TERM 81 55195 - 55147 - G 86 -7.6 -4.92757 | gap 2, overlap 55148 GGATCAACAATAAAA CTTGGAGCCGACCATCTGGTTCGC CGC GCGAAACA-A-GATCAGCCCCAAA CGGTTTTATGATGGC TERM 82 55194 - 55148 - G 71 -8.9 -3.5457 | gap 2, overlap 55147 GATCAACAATAAAAC TTGGAGCCGACCATCTGGTTCGC CGC GCGAAACA-A-GATCAGCCCCAA ACGGTTTTATGATGG TERM 83 55516 - 55463 - R 100 -13.6 -3.72405 | gap 2, opp_overlap 55475 55479, overlap 55475 55479 GGCATAAAATTATAA TCTCCTA-CAT-AACAAAGAACTCCC AAAA GGGAGTTCTTTGTTTAGGCTAGGAAA AATAGTTAGCCCTCA TERM 84 55502 - 55475 - R 100 -17.2 -3.494 | opp_overlap 55475 55479, overlap 55463 55479 TAATCTCCTACATAA CAAAGAACTCCC AAAA GGGAGTTCTTTG TTTAGGCTAGGAAAA TERM 85 55475 - 55502 + r 100 -17.2 -3.59979 | opp_overlap 55475 55463 55479, overlap 55479 TAATCTCCTACATAA CAAAGAACTCCC AAAA GGGAGTTCTTTG TTTAGGCTAGGAAAA TERM 86 55479 - 55498 + r 100 -12.2 -4.44046 | opp_overlap 55475 55463 55479, overlap 55475 CTCCTACATAACAAA GAACTCCC AAAA GGGAGTTC TTTGTTTAGGCTAGG TERM 87 55498 - 55479 - R 100 -12.2 -4.38927 | opp_overlap 55479 55475, overlap 55475 55463 CTCCTACATAACAAA GAACTCCC AAAA GGGAGTTC TTTGTTTAGGCTAGG YpsIP31758_A0037 56574 - 55522 - | transcription repressor protein KorB YpsIP31758_A0038 57656 - 56571 - | plasmid partition protein TERM 88 56627 - 56647 + g 91 -3.2 -5.79588 | overlap 56628 56629 ACTCACGAACTTCTT TTGCTGCT TTTCT AGCAGCCG TTTTTTTGATTTTCC TERM 89 57619 - 57634 + g 87 -6.8 -5.14965 | TGGCTGCCTGGAACT CGGCTT TCGA GAGCCG TTTTTTCATGGACAT TERM 90 57700 - 57683 - R 76 -7 -4.54727 | CGCCTGAAATTAAAA TAGCGG TGACAG CCGCTA ACGATGCAGTAAGTT TERM 91 57744 - 57758 + r 75 -5.8 -4.63486 | opp_overlap 57744 TGCCTAATTCAATCA TTTTAG CCG CTAAAA TTTTCTTGCCGCACT TERM 92 57815 - 57802 - R 100 -9.5 -6.11644 | opp_overlap 57801 57800 TTAGGTAAAAAAAAA CCCGC CGAA GCGGG AATTCTAAAAATTTA YpsIP31758_A0040 58155 - 57838 - | putative stable inheritance protein SEQUENCE gi|153930630|ref|NC_009705.1| Yersinia pseudotuberculosis IP 31758 plasmid_153kb, complete sequence (length 153140) YpsIP31758_B0002 596 - 1870 + | hypothetical protein TERM 1 1937 - 1912 - f 78 -7.5 -4.56597 | opp_overlap 1915, overlap 1915 GGTGGGGTGTAAAAA TAAGGGGTGGC TTAT GTCACCCCTTT TTATCGTTTTATAAG TERM 2 1934 - 1915 - f 88 -9.2 -4.40561 | opp_overlap 1915, overlap 1912 GGGGTGTAAAAATAA GGGGTGGC TTAT GTCACCCC TTTTTATCGTTTTAT TERM 3 1915 - 1934 + F 100 -11.4 -5.10601 | opp_overlap 1915 1912 GGGGTGTAAAAATAA GGGGTGGC TTAT GTCACCCC TTTTTATCGTTTTAT TERM 4 2084 - 2104 + G 74 -9 -3.66732 | overlap 2085 AATATTTACTATTCA GCCAGACC TATTT GGTTTGGC TTATTGGACTCATTA TERM 5 5001 - 5028 + G 70 -10 -3.18849 | opp_overlap 5000 5020, overlap 4998 TCAAACCTGAACTAT TCACCGATATCT TCAG AGATATCAGTGA TATTAATAGTATGGA TERM 6 5078 - 5057 - g 82 -5.3 -5.12617 | gap 1 GAACTATTCAAAAAA CCGT-TTATT TTC AATAATACGG TCAATGTCAAAGTGT TERM 7 5484 - 5463 - g 73 -8 -3.99405 | gap 1 TCAACTTATCAGAAA CCCTCACCC TTGGC GGG-GAGGG CTTACAAGAGGCTAT YpsIP31758_B0003 1964 - 8365 + | helicase. putatve TERM 8 9263 - 9295 + G 72 -10.8 -2.74525 | opp_overlap 9267 9269, overlap 9260 9254 ATTATTTGATGTTGA TACAGACTGCTT TTCTGGTTT AAGCAGTCTGTA TGATCTCTCATTTGC YpsIP31758_B0004 8970 - 9767 + | hypothetical protein YpsIP31758_B0005 9787 - 10539 + | hypothetical protein TERM 9 11478 - 11463 - g 71 -4.6 -4.62302 | GAAGAGGCCGAAAAA TGGGCG GGTA CGCTCA CACATCAAGCGCCCA TERM 10 11641 - 11627 - g 75 -3.6 -5.055 | overlap 11629 CGAACCGTTAAAAAA TATTGT TGA ACAACA TGCCGTGGCACTGCA YpsIP31758_B0006 10542 - 11687 + | hypothetical protein YpsIP31758_B0007 11698 - 12858 + | putative lipoprotein TERM 11 13600 - 13586 - g 73 -10 -3.37796 | TTTGATGATGTACAA GTTGCC GCA GGCAAC ACCGACGCCTTAGCC YpsIP31758_B0008 12938 - 13993 + | M23 peptidase domain-containing protein TERM 12 14034 - 14057 + G 78 -9 -4.08767 | opp_overlap 14029 14031 14034 AGATGAAGTAGACCA TTGGGCAAAT GGGG ATTTGCCTAA TTTTGCGCCGATAAC TERM 13 15126 - 15114 - g 73 -7.7 -4.13767 | CCCTGTAGCTGAAAA TGACG CAA CGTCA CCGAGCTATCCGAGT TERM 14 15628 - 15618 - g 82 -5.4 -5.04249 | TCTTGAAAAAATAAA GGAA TTG TTCC AATCACTCGGCAGGC YpsIP31758_B0009 14008 - 15687 + | hypothetical protein TERM 15 15749 - 15731 - T 85 -6 -5.10497 | opp_overlap 15731 AATCCATGCAAAAAA CTCCCT GTCCGTT AGGGAG TTTTTTTGGGATCAC TERM 16 15731 - 15749 + T 91 -6.7 -5.44119 | opp_overlap 15731 AATCCATGCAAAAAA CTCCCTG TCCGT TAGGGAG TTTTTTTGGGATCAC YpsIP31758_B0010 16500 - 15793 - | type IV prepilin peptidase PilD YpsIP31758_B0011 16976 - 16497 - | conjugal transfer protein YpsIP31758_B0012 17153 - 17611 + | type IV pilus biogenesis protein PilM TERM 17 17792 - 17763 - g 76 -2.1 -5.31855 | gap 1, opp_overlap 17763 17784 CATGAATAACAAAAA CCTAACGGTAGCTA TTA TCGCTA-CGCTGGG TATTTCTTGCGTAAG TERM 18 17949 - 17978 + G 78 -10.9 -3.35278 | gap 1, opp_overlap 17948 17947 17951, overlap 17951 TGATGATGGACAATC T-ACTGGATACCGT AGC GCGGTATCCAGTCA TTCATCTATGCTTAG TERM 19 17951 - 17975 + G 95 -15.1 -2.83613 | opp_overlap 17951 17948 17947, overlap 17949 ATGATGGACAATCTA CTGGATACCGT AGC GCGGTATCCAG TCATTCATCTATGCT TERM 20 17975 - 17951 - g 88 -14.4 -2.60808 | opp_overlap 17949 17951, overlap 17948 17947 ATGATGGACAATCTA CTGGATACCG TAGCG CGGTATCCAG TCATTCATCTATGCT TERM 21 18035 - 18018 - g 71 -4.2 -4.73912 | overlap 18011 ACAAAAACCAGAAAA TATTGC TGTACC GCAATA CCCCGCGACACAAAC YpsIP31758_B0013 17749 - 18915 + | type IV pilus biosynthesis protein PilL TERM 22 20473 - 20461 - g 74 -9.1 -3.62275 | AGCCAGCAGGTCAAA CTCCG CAG CGGAG AGACCTTAGTTATTT YpsIP31758_B0014 18931 - 20625 + | PilN family type IV pilus biogenesis protein TERM 23 21117 - 21093 - g 79 -3.7 -5.31877 | gap 1 ACCGACCAGAAAAAA GAGTCTA-CT TAAGCG AGATAGACTC AATAATCGTGCTGTC TERM 24 21625 - 21609 - g 73 -2.3 -5.04082 | TAAAGAAGAACAAAA TAGAATT AAA AATGCTA CCAAACAAGATGTTC YpsIP31758_B0015 20716 - 22251 + | type IV pilus biogenesis protein PilO2 pilP3 22238 - 22774 + | type IV pilus biogenesis protein PilP YpsIP31758_B0017 22802 - 24301 + | type IV pilus biosynthesis protein PilQ YpsIP31758_B0018 24350 - 25429 + | type II secretion system protein F YpsIP31758_B0019 25453 - 25980 + | type IV prepilin domain-containing protein PilS TERM 25 26002 - 26020 + F 100 -13.2 -5.15969 | opp_overlap 26005 GACTTTTATTGTTAA CAAGGTGC TAT GCACCTTG TTTTTTAGGTTGAGA TERM 26 26017 - 26005 - f 75 -9.1 -3.63515 | opp_overlap 26002 TTTTATTGTTAACAA GGTGC TAT GCACC TTGTTTTTTAGGTTG TERM 27 26846 - 26856 + G 70 -2.4 -4.92757 | ATTGGCAAACGACTT GAGC TGA GCGC TTTTATTGTTGATGA YpsIP31758_B0020 26018 - 26974 + | type IV secretion system protein PilT TERM 28 27975 - 27987 + G 79 -10.5 -3.76125 | opp_overlap 27971 TTGGTAACACAGTCA CGGCC AAT GGCCG TTTACGTTCAACTGA YpsIP31758_B0021 26993 - 28279 + | type IV pilus biogenesis protein PilV YpsIP31758_B0022 28990 - 30117 + | shufflon-specific DNA recombinase YpsIP31758_B0023 30870 - 30238 - | hypothetical protein YpsIP31758_B0024 31069 - 31194 + | hypothetical protein YpsIP31758_B0025 32746 - 31244 - | hypothetical protein TERM 29 31673 - 31657 - G 75 -5.2 -4.6856 | overlap 31646 TAAAGAGGGCAAAAA GTTTTC TCTCT GAAAAC GAAAGAGCTTTAATG YpsIP31758_B0026 32927 - 33907 + | hypothetical protein YpsIP31758_B0027 33907 - 34389 + | hypothetical protein TERM 30 34660 - 34647 - g 73 -2.4 -5.10029 | opp_overlap 34654 AGTAATGCTAAAAAA CTGA TTCTTG TCAG CGATGTTGATAATAT YpsIP31758_B0028 34389 - 35030 + | hypothetical protein YpsIP31758_B0029 35096 - 35545 + | hypothetical protein YpsIP31758_B0030 35580 - 35987 + | hypothetical protein YpsIP31758_B0031 35996 - 37555 + | putative DNA topoisomerase YpsIP31758_B0032 37527 - 37994 + | hypothetical protein TERM 31 38136 - 38115 - g 71 -4.5 -4.64861 | GGCTTCCAAAAGAAA GATAACTTT TTTG AAAGTGATC GCATTATTATTAGTA YpsIP31758_B0033 38031 - 40478 + | putative DNA topoisomerase III TERM 32 42655 - 42630 - g 73 -9.7 -3.29829 | CACAGTGGCGGACAA CACCGACCGAT ACTC ATCGGACGATG AAGACGATATTGATT YpsIP31758_B0034 40729 - 42777 + | putative DNA replication primase TERM 33 42836 - 42811 - f 76 -9.7 -3.3382 | gap 1, opp_overlap 42816, overlap 42812 CTCACTACAGATCAA TGC-GAGGCCGT TCT ACGGCCTCTGCT GCCGAGGTGACAATA TERM 34 42835 - 42812 - f 91 -13.2 -2.59971 | gap 1, opp_overlap 42816, overlap 42811 TCACTACAGATCAAT GC-GAGGCCGT TCT ACGGCCTCTGC TGCCGAGGTGACAAT TERM 35 42816 - 42830 + F 81 -11.4 -2.78596 | opp_overlap 42812 42811 TACAGATCAATGCGA GGCCGT TCT ACGGCC TCTGCTGCCGAGGTG YpsIP31758_B0035 42851 - 43351 + | hypothetical protein TERM 36 43376 - 43362 - T 100 -11.4 -5.66229 | opp_overlap 43362 ATTAATAATAAAAAA GCCCAC GGA GTGGGC TTTTACAGGGCGGGT TERM 37 43362 - 43376 + T 100 -11.4 -4.07687 | opp_overlap 43362 ATTAATAATAAAAAA GCCCAC GGA GTGGGC TTTTACAGGGCGGGT YpsIP31758_B0036 44107 - 43466 - | hypothetical protein YpsIP31758_B0037 44523 - 45080 + | hypothetical protein YpsIP31758_B0038 45070 - 45666 + | hypothetical protein YpsIP31758_B0039 45659 - 46153 + | hypothetical protein YpsIP31758_B0040 46146 - 46808 + | hypothetical protein YpsIP31758_B0041 47080 - 47271 + | hypothetical protein TERM 38 47404 - 47394 - g 100 -5.4 -5.72616 | opp_overlap 47394 AGCGATACAAAAAAA TCAG CGG CTGA TTGCTTCGGGGAGAT YpsIP31758_B0042 47271 - 47531 + | hypothetical protein TERM 39 47549 - 47533 - T 70 -5.1 -4.44046 | CTGATGGCAAATAAA CTAAAGC AAC GCCTCAG TTACATAAAGAATAT TERM 40 47834 - 47844 + T 78 -5.4 -5.00616 | GGTGATAACTCCAGT CAGT TGA ACTG TTTTTTCGCACAAAA TERM 41 48491 - 48474 - T 78 -9.9 -3.53733 | overlap 48472 CTGATGCGATAAACA GCGTTTG TCCG CAAACGC ATAATCAGCTTTCGA TERM 42 48517 - 48535 + T 88 -11 -3.74693 | opp_overlap 48516 TTCGATCTTCAATAT GGTGGTCT GAG AGACCGCC TTTAATACCGTGGGC TERM 43 48849 - 48865 + T 89 -3.7 -5.64274 | ATTGACGCGCATTCT TCTTGCA TTG TGGAAGA TTTTTTTATCCATGC YpsIP31758_B0043 49552 - 49007 - | hypothetical protein YpsIP31758_B0044 49728 - 49934 + | haemolysin expression modulating protein TERM 44 50808 - 50794 - f 73 -10 -2.96695 | overlap 50791 CTGCGTATTAAAGCA GGCATG ACA CATGCC AGTGCTGCAAAAAGG YpsIP31758_B0045 51008 - 51259 + | hypothetical protein YpsIP31758_B0046 51291 - 52031 + | hypothetical protein TERM 45 52205 - 52172 - T 100 -18.3 -4.23213 | opp_overlap 52179 TTCAGATGCAAGAAA TGACAAAGGGCATCC TTTC GGGTGCCCTTTGTCA TAATCAGTACTGCAA TERM 46 52179 - 52198 + T 100 -11.4 -3.99592 | opp_overlap 52172 GCAAGAAATGACAAA GGGCATCC TTTC GGGTGCCC TTTGTCATAATCAGT TERM 47 52216 - 52233 + T 73 -7.1 -4.18164 | TGTCATAATCAGTAC TGCAAAT TCGA ATTTGCA TTGTTTTACAACCTT YpsIP31758_B0047 53237 - 52482 - | hypothetical protein YpsIP31758_B0048 53610 - 53494 - | transposase, truncation TERM 48 53749 - 53764 + r 89 -11.8 -3.28712 | opp_overlap 53741 53749 TCAAAATCCGAACTA CCCGCC TGTC GGCGGG TTCTGGGCAAGAGAC TERM 49 53764 - 53749 - R 83 -11.8 -2.78738 | opp_overlap 53749, overlap 53741 TCAAAATCCGAACTA CCCGCC TGTC GGCGGG TTCTGGGCAAGAGAC YpsIP31758_B0049 54195 - 53809 - | putative lipoprotein YpsIP31758_B0050 55375 - 54197 - | hypothetical protein TERM 50 54842 - 54815 - G 93 -4.8 -5.60864 | opp_overlap 54815 CAGACAGTAAAAAAA TGCCGCAGGC CCGCACAC GCTTGCAGCA ATTTGATTGGGGAAA YpsIP31758_B0051 55914 - 55378 - | hypothetical protein YpsIP31758_B0052 56448 - 56867 + | mutagenesis and repair protein MucA YpsIP31758_B0053 56870 - 58135 + | mutagenesis and repair protein MucB YpsIP31758_B0054 58370 - 58570 + | hypothetical protein YpsIP31758_B0055 58563 - 59291 + | hypothetical protein TERM 51 59315 - 59333 + F 100 -6 -5.93809 | opp_overlap 59310 59315 ATTTATAAATTAAAA GTGGCT CACATGA AGCCAC TTTTTTTTATCCCAA TERM 52 59333 - 59315 - f 79 -6.7 -4.62475 | opp_overlap 59315, overlap 59310 ATTTATAAATTAAAA GTGGCTC ACATG AAGCCAC TTTTTTTTATCCCAA TERM 53 59505 - 59493 - f 77 -6.3 -4.67038 | GTTGTAAAATCAAAA GAACA GAG TGTTC GCTAGCATTCTACCC TERM 54 59638 - 59657 + F 82 -2.2 -5.68023 | opp_overlap 59629, overlap 59634 59629 AATCCATGTCATTTA TAGAATAT AAAT ACATTCTA TTTTTTTCATTGTAA TERM 55 59974 - 59963 - g 80 -3 -5.40464 | CATTACAAAGAAAAA TACT AAAT AGTA AAATAGGCTTTCTCA YpsIP31758_B0056 59791 - 60450 + | hypothetical protein TERM 56 60713 - 60741 + G 70 -7.6 -3.86897 | opp_overlap 60719 60720, overlap 60720 TTGAAGACATCTATT CTCAAATTGATT ATCTC AATCATTTTGAG TTTATCGAGAGTGAA YpsIP31758_B0057 60616 - 61206 + | hypothetical protein TERM 57 62294 - 62284 - gf 71 -4 -4.6635 | opp_overlap 62284 AAATTCTTAAGAAAA TCAA ACA TTGA GTTTTTTCTTGTCAC YpsIP31758_B0058 61336 - 62319 + | hypothetical protein TERM 58 62803 - 62784 - gf 95 -8 -5.12707 | TTAAACCCGAAAAAA TATCTGAT ACTT ATCAGATA GTCGAGATTACTAAT YpsIP31758_B0059 62291 - 63076 + | hypothetical protein TERM 59 63203 - 63191 - f 72 -6.3 -4.28254 | CCCGAAGATTGAAAA GTTAG CGA CTAAC GGGTAAGATTTTGTG YpsIP31758_B0060 63339 - 63545 + | virulence modulating protein YpsIP31758_B0061 63912 - 65165 + | hypothetical protein TERM 60 65520 - 65480 - f 100 -27.1 -3.29144 | opp_overlap 65471 TGATGCCTCCTATAA GGGGTTCCGTGCACTTTTC GGG GAAATGTGCACGGAACCCC TAAGACCGCAACGGA YpsIP31758_B0062 65878 - 66474 + | GTP cyclohydrolase II YpsIP31758_B0063 66487 - 68148 + | hypothetical protein YpsIP31758_B0064 68249 - 69187 + | hypothetical protein TERM 61 69509 - 69476 - g 75 -6.1 -4.59773 | gap 1 TGTGACCGCGAAAAA TTGTTTGAAGGTGAAG AGC CTTCACCTTCGC-CAA ATCGAGCGATTGCCG YpsIP31758_B0065 69197 - 71044 + | hypothetical protein TERM 62 71206 - 71227 + F 82 -7.9 -4.57073 | overlap 71207 AATAGATAGGTCAAC GGGGGTGGC GAAA GCCACCTCA TTTTTAGGAAACGTC TERM 63 71207 - 71226 + F 86 -11.4 -3.33922 | overlap 71206 ATAGATAGGTCAACG GGGGTGGC GAAA GCCACCTC ATTTTTAGGAAACGT YpsIP31758_B0066 71244 - 72476 + | hypothetical protein YpsIP31758_B0067 72485 - 73063 + | putative oxidoreductase YpsIP31758_B0068 74806 - 74150 - | hypothetical protein TERM 64 74787 - 74797 + g 73 -2.4 -5.17353 | AGACACGGAGGAGTG AGGC ATA GCCC TTTTTTCATAGCTCT YpsIP31758_B0069 75567 - 75295 - | hypothetical protein TERM 65 75375 - 75325 - G 76 -2.1 -5.18409 | overlap 75326 75329 GAAAATAAAAATAAA TGCATACAATACCTCGACGAC-CAT AGA AGGTGTTGTCGAGACATTGTATA-A GCGATTTAAAACATC TERM 66 75405 - 75424 + g 89 -3.6 -5.66338 | overlap 75397 CTTTGATTATTACAT CCATATTG GTTG TAGTATGG TTTTTTGTTCTCTTT YpsIP31758_B0070 76358 - 75564 - | hypothetical protein TERM 67 76314 - 76326 + g 76 -2 -5.21236 | AAGATTAATCATCGT TTCA AAATA TGAA TTTTTATTATAAGTT YpsIP31758_B0071 77980 - 76523 - | hypothetical protein TERM 68 77818 - 77863 + g 74 -6.4 -4.33146 | opp_overlap 77826, overlap 77815 77826 ACATACGATACTTTT CATAGAAATACTTCTGATAA CTGTAA TTATCAGAAGTATTTCCAAA TTTATGATTTTTTGT TERM 69 77855 - 77826 - G 91 -11.7 -4.0371 | opp_overlap 77818 77826 TACTTTTCATAGAAA TACTTCTGATAAC TGTA ATTATCAGAAGTA TTTCCAAATTTATGA TERM 70 77826 - 77855 + g 81 -11 -3.65426 | opp_overlap 77826, overlap 77818 TACTTTTCATAGAAA TACTTCTGATAA CTGTAA TTATCAGAAGTA TTTCCAAATTTATGA TERM 71 78211 - 78180 - R 91 -8 -4.87786 | opp_overlap 78180 78181 78206, overlap 78181 GGAATGCCAGAAAAA TCCGTCACCTAAGC TGAT GGTTAAGTGACGGT ATTTAGCGTCAAAAT TERM 72 78210 - 78181 - R 89 -11.5 -3.51948 | opp_overlap 78180 78181 78206, overlap 78180 GAATGCCAGAAAAAT CCGTCACCTAAGC TGAT GGTTAAGTGACGG TATTTAGCGTCAAAA TERM 73 78181 - 78210 + r 74 -9.3 -3.38046 | opp_overlap 78181 78180, overlap 78180 78206 GAATGCCAGAAAAAT CCGTCACCTAAGC TGAT GGTTAAGTGACGG TATTTAGCGTCAAAA YpsIP31758_B0072 79402 - 78329 - | hypothetical protein TERM 74 79787 - 79824 + r 72 -7.9 -3.86653 | opp_overlap 79790 79794, overlap 79790 GATAATCACTTCACT GAATTAATGCTAATGTA CGCA TACGCTAGCATTAACTC TTCTATTTGGTCACT TERM 75 80397 - 80377 - R 81 -4.1 -5.41143 | GAGGTGCCAAAAAAA TTCACTCTT GAA AAAAATGAA ATTACTTTTGATAAT YpsIP31758_B0073 82290 - 82045 - | ChpR family protein TERM 76 82327 - 82309 - R 76 -10.4 -2.91274 | opp_overlap 82309 CTCACTCCAACCACA GTATCAAC ATT GTTGATAC TTTACGCATTAACAT TERM 77 82309 - 82327 + r 82 -10.4 -3.60971 | opp_overlap 82309 CTCACTCCAACCACA GTATCAAC ATT GTTGATAC TTTACGCATTAACAT YpsIP31758_B0074 83390 - 82551 - | hypothetical protein TERM 78 83755 - 83785 + r 81 -11.3 -2.76492 | opp_overlap 83755 83762, overlap 83762 GTTTTGGGCCAAGCA TTAAAAATGCCGC TATAT GCGGCATTTTTAC GTTTACACTCAGTCA TERM 79 83785 - 83755 - R 80 -11.3 -2.70932 | opp_overlap 83755 83762, overlap 83762 GTTTTGGGCCAAGCA TTAAAAATGCCGC TATAT GCGGCATTTTTAC GTTTACACTCAGTCA TERM 80 83778 - 83762 - R 100 -9.4 -4.81083 | opp_overlap 83762 83755, overlap 83755 GCCAAGCATTAAAAA TGCCGC TATAT GCGGCA TTTTTACGTTTACAC TERM 81 83762 - 83778 + r 100 -9.4 -4.81249 | opp_overlap 83755 83762, overlap 83755 GCCAAGCATTAAAAA TGCCGC TATAT GCGGCA TTTTTACGTTTACAC YpsIP31758_B0075 84912 - 83794 - | putative conjugal transfer protein TraE TERM 82 85869 - 85837 - R 75 -3.4 -5.08255 | gap 2, opp_overlap 85837 ATGCGCAAAATAAAA GCTTCCTATGACCGCG CTT CGCGGG-A-AGGTAGC ATTCGTACTCGTGAA TERM 83 85932 - 85919 - R 74 -9.5 -3.29461 | opp_overlap 85919 TAACTCTTTTTAGAA CCCGC GAAA GCGGG TTTTTTGTATATTAG TERM 84 85919 - 85932 + r 100 -9.5 -5.47431 | opp_overlap 85919 TAACTCTTTTTAGAA CCCGC GAAA GCGGG TTTTTTGTATATTAG YpsIP31758_B0076 87726 - 86182 - | hypothetical protein TERM 85 86653 - 86668 + g 79 -3.2 -5.23292 | GTTTGAATATTCGGA GGCTAA CATT TCAGCC TTTTCTTTTATATGA YpsIP31758_B0077 89100 - 88093 - | hypothetical protein TERM 86 88803 - 88781 - G 85 -4.8 -5.52096 | opp_overlap 88781 AAAGCTAATAAAAAA CTATTTGGTG CCC CACCTGATAG TGTCCTCAGCGCTCT TERM 87 89395 - 89411 + r 95 -8 -5.22312 | opp_overlap 89395 AAATCAAATTAGAAA TGCCAC TTAGT GTGGCA TTTTTTCGTATGGCT TERM 88 89411 - 89395 - R 76 -8 -4.18351 | opp_overlap 89395 AAATCAAATTAGAAA TGCCAC TTAGT GTGGCA TTTTTTCGTATGGCT YpsIP31758_B0078 89916 - 89530 - | hypothetical protein TERM 89 89815 - 89833 + g 74 -3.8 -4.8667 | CTTATAAAACTCGTC GCAGAGTA ACT TATGCTGC TTTTTGTGCAATGTG YpsIP31758_B0079 91330 - 89918 - | hypothetical protein YpsIP31758_B0080 91930 - 91343 - | hypothetical protein YpsIP31758_B0081 92100 - 92549 + | hypothetical protein TERM 90 93410 - 93399 - g 73 -2.2 -5.08483 | gap 1, overlap 93401 CAAAATCAAACAAAA CGCGC TAT GC-CG ATAGCTTCGCGGAAG YpsIP31758_B0082 92987 - 93670 + | hypothetical protein YpsIP31758_B0083 94704 - 93811 - | hypothetical protein TERM 91 93921 - 93935 + g 77 -6.4 -4.56775 | TATCAAATATTATCC GTAAGG ATT CCTTGC TTTTTAAAGAAACAT YpsIP31758_B0084 95619 - 95269 - | hypothetical protein YpsIP31758_B0085 95833 - 96606 + | hypothetical protein YpsIP31758_B0086 97034 - 97675 + | hypothetical protein YpsIP31758_B0087 97665 - 98189 + | hypothetical protein YpsIP31758_B0088 98182 - 98637 + | hypothetical protein YpsIP31758_B0089 98637 - 99281 + | hypothetical protein TERM 92 100095 - 100126 + T 72 -6.4 -4.30933 | opp_overlap 100097, overlap 100097 AACGTTAGAGACAGA CACGGGGCATGTTG TGTA CGTCACGCCCCGTA TTTCTTAGCTTTCTC TERM 93 100097 - 100124 + T 78 -9 -3.74101 | opp_overlap 100097, overlap 100095 CGTTAGAGACAGACA CGGGGCATGTTG TGTA CGTCACGCCCCG TATTTCTTAGCTTTC YpsIP31758_B0090 101069 - 100218 - | putative endonuclease YpsIP31758_B0091 102191 - 101361 - | hypothetical protein TERM 94 101453 - 101467 + g 72 -5.8 -4.44307 | TGATATCTTTACCCA TGTTAT TAC ATAACA TTATTATTTTTTCTA TERM 95 102073 - 102063 - G 85 -5.4 -5.1861 | GTTATCATCAAAAAA CTCA ACC TGAG CATCTATCCCAACAT TERM 96 103142 - 103129 - g 70 -2.3 -4.88407 | CTATTTAACGAAAAA CCCGA TAAA TCTGG TCAAAAAAGCCAGCG YpsIP31758_B0092 102713 - 103843 + | putative integrase family protein TERM 97 103973 - 104006 + T 100 -8.7 -4.63007 | opp_overlap 103976, overlap 103974 103975 AAACATCGCCAAAAG AAAGAGGGCCGCAGC GAAA GCTGTGGCCCTCACC TTTTATATCATTATC TERM 98 103974 - 104005 + T 89 -12.2 -3.36719 | opp_overlap 103976, overlap 103973 103975 AACATCGCCAAAAGA AAGAGGGCCGCAGC GAAA GCTGTGGCCCTCAC CTTTTATATCATTAT TERM 99 103975 - 104004 + T 100 -15.7 -2.60947 | opp_overlap 103976, overlap 103974 103973 ACATCGCCAAAAGAA AGAGGGCCGCAGC GAAA GCTGTGGCCCTCA CCTTTTATATCATTA TERM 100 104003 - 103976 - T 100 -17 -4.65933 | opp_overlap 103975 103974 103973 CATCGCCAAAAGAAA GAGGGCCGCAGC GAAA GCTGTGGCCCTC ACCTTTTATATCATT TERM 101 104432 - 104417 - T 87 -8.2 -4.52589 | opp_overlap 104415 104417 CTCTCTTAGACAAAA GGGAGC TAAA GCCCCC TCTTATCAACTACAT YpsIP31758_B0093 105609 - 104452 - | DNA-binding protein TERM 102 105312 - 105297 - G 71 -6.8 -4.29073 | CAAGAATTGAATAAA GACGGC AATT ACCGTC ACGAAGGTAAGCAAT YpsIP31758_B0094 106351 - 106241 - | hypothetical protein TERM 103 106358 - 106338 - G 100 -13.3 -4.08767 | opp_overlap 106338 TTTACCTGCTCAAAA CGGCGCTTC CCC AAAGCGCCG TTTTTTTTAATACAA TERM 104 106338 - 106358 + g 100 -12.6 -5.86061 | opp_overlap 106338 TTTACCTGCTCAAAA CGGCGCTT CCCCA AAGCGCCG TTTTTTTTAATACAA TERM 105 107103 - 107086 - g 100 -10.5 -4.51197 | overlap 107087 GAGAAGCAATTAAAA CCGCCCC GCAT GGGGCGA CTAACACAAATAAAT TERM 106 107102 - 107087 - g 82 -11.8 -3.29634 | overlap 107086 AGAAGCAATTAAAAC CGCCCC GCAT GGGGCG ACTAACACAAATAAA YpsIP31758_B0095 106389 - 107120 + | hypothetical protein TERM 107 107426 - 107415 - g 91 -7.2 -5.26875 | TGCTGAATTAAAAAA GCGG TTAG CCGC AAAGAACAATGAACT YpsIP31758_B0096 107209 - 107700 + | hypothetical protein TERM 108 107744 - 107729 - T 100 -10.4 -4.30014 | opp_overlap 107729 GGCATCAATTGAAAA GGGAGC CAAA GCTCCC TTTTTTAATATTCGC TERM 109 107729 - 107744 + T 100 -10.4 -5.27779 | opp_overlap 107729 GGCATCAATTGAAAA GGGAGC CAAA GCTCCC TTTTTTAATATTCGC YpsIP31758_B0097 110271 - 107749 - | type IV secretion system protein DotA-like protein YpsIP31758_B0098 110541 - 111107 + | hypothetical protein TERM 110 111194 - 111180 - T 70 -7.8 -3.62572 | opp_overlap 111175 CATCAGGACGTGAAA GCCTCG CAT CAAGGC AATCATCTTTACGAG TERM 111 111471 - 111499 + T 100 -13.3 -3.78775 | opp_overlap 111477, overlap 111477 CATTCGGTATGTAAG TCTAAATGCCCGA TAG TCGGGCATTTACA TTTAATAGTAGCAAA TERM 112 111477 - 111493 + T 100 -12.3 -3.87551 | opp_overlap 111477, overlap 111471 GTATGTAAGTCTAAA TGCCCGA TAG TCGGGCA TTTACATTTAATAGT TERM 113 111493 - 111477 - T 100 -12.3 -3.6715 | opp_overlap 111471 111477 GTATGTAAGTCTAAA TGCCCGA TAG TCGGGCA TTTACATTTAATAGT YpsIP31758_B0099 112385 - 111501 - | putative lipoprotein YpsIP31758_B0100 112963 - 112397 - | hypothetical protein YpsIP31758_B0101 113796 - 112978 - | hypothetical protein YpsIP31758_B0102 114951 - 114028 - | hypothetical protein YpsIP31758_B0103 115911 - 114952 - | hypothetical protein TERM 114 115140 - 115130 - G 73 -5.4 -4.49644 | opp_overlap 115130 ATCAAAAATGTAAAA TTGG CAT CCAA CTGCTTTTTTGTCTC YpsIP31758_B0104 117295 - 115982 - | type IV secretion system protein IcmP/DotM TERM 115 117234 - 117257 + g 93 -14 -3.35798 | opp_overlap 117224 117234 AGAAATGCTGCAAAA CCCAATGCTA CTAA TAGCATTGGG TTATCGGTCAGAGAT TERM 116 117257 - 117234 - G 100 -14 -4.13343 | opp_overlap 117234, overlap 117224 AGAAATGCTGCAAAA CCCAATGCTA CTAA TAGCATTGGG TTATCGGTCAGAGAT YpsIP31758_B0105 117902 - 117309 - | hypothetical protein TERM 117 117805 - 117821 + g 86 -12.3 -3.46509 | opp_overlap 117801 117799, overlap 117799 ACCATAACAGATTTA GCGCTAC TAG GTAGCGC TTCATATTGTTGCAA TERM 118 118008 - 118029 + r 80 -8.7 -4.04209 | opp_overlap 118009, overlap 118009 GCTGATCATTTAAAA ACGCAGAGA CCTC TCTCTGCGC TTTATCGTCATTTGA TERM 119 118028 - 118009 - R 100 -12.2 -4.68593 | opp_overlap 118009 118008 CTGATCATTTAAAAA CGCAGAGA CCTC TCTCTGCG CTTTATCGTCATTTG TERM 120 118009 - 118028 + r 86 -12.2 -3.01802 | opp_overlap 118009, overlap 118008 CTGATCATTTAAAAA CGCAGAGA CCTC TCTCTGCG CTTTATCGTCATTTG YpsIP31758_B0106 119045 - 118095 - | plasmid stability protein StbA family protein TERM 121 118430 - 118441 + g 81 -5.8 -4.86001 | overlap 118428 TTATACCAAATTTTG CTGC AACC GCAG TTTTTATCCCATCAT TERM 122 119097 - 119112 + r 70 -2.6 -5.06103 | GCCATCATCCACACC CAGAAA TGAT TTTTTG TTTTTTACAGATTCT TERM 123 120219 - 120163 - R 78 -9.6 -3.65224 | gap 1, opp_overlap 120169 120171 120173, overlap 120167 120171 ATTTTACCGCAAGAA GCGACAACCTTAGCTGCAATCTAGCTG CTAT CTACTAGTTTGCAG-TAAGATTGCAGC TATCTATTATTTGCC TERM 124 120215 - 120167 - R 71 -9.8 -2.66106 | gap 1, opp_overlap 120169 120171 120173, overlap 120163 120171 TACCGCAAGAAGCGA CAACCTTAGCTGCAATCTAGCTG CTAT CTACTAGTTTGCAG-TAAGATTG CAGCTATCTATTATT TERM 125 120171 - 120223 + r 80 -9.9 -3.61883 | opp_overlap 120167 120163 120171, overlap 120169 120173 GCAAGAAGCGACAAC CTTAGCTGCAATCTAGCTGCTATCT ACT AGTTTGCAGTAAGATTGCAGCTATC TATTATTTGCCTTTT TERM 126 120173 - 120221 + r 100 -16.9 -3.36326 | opp_overlap 120167 120163 120171, overlap 120171 120169 AAGAAGCGACAACCT TAGCTGCAATCTAGCTGCTATCT ACT AGTTTGCAGTAAGATTGCAGCTA TCTATTATTTGCCTT YpsIP31758_B0107 120518 - 120219 - | hypothetical protein YpsIP31758_B0108 121153 - 120524 - | hypothetical protein TERM 127 121162 - 121195 + r 75 -9 -3.65827 | opp_overlap 121170, overlap 121163 121167 ACGCCATTTATGCCC CTTAATCATGCAGC AAGATA GCTGCATGATTGAA TTTGAGTAAAAATTA TERM 128 121163 - 121194 + r 89 -12.5 -2.79175 | opp_overlap 121170, overlap 121162 121167 CGCCATTTATGCCCC TTAATCATGCAGC AAGATA GCTGCATGATTGA ATTTGAGTAAAAATT TERM 129 121167 - 121190 + r 81 -11.1 -3.29324 | opp_overlap 121170, overlap 121163 121162 ATTTATGCCCCTTAA TCATGCAGC AAGATA GCTGCATGA TTGAATTTGAGTAAA TERM 130 121247 - 121208 - R 82 -6.7 -4.74801 | gap 1, opp_overlap 121210, overlap 121212 GAATTTGAGTAAAAA TTA-ATTGCAGCTAGATT GCCGA AACCTAGCTGCAAGATAA TTAAAGCATAGATTA TERM 131 121242 - 121212 - R 100 -13.5 -3.84901 | opp_overlap 121210, overlap 121208 TTGAGTAAAAATTAA TTGCAGCTAGATT GCCGA AACCTAGCTGCAA GATAATTAAAGCATA TERM 132 121299 - 121346 + r 71 -4.1 -4.7497 | opp_overlap 121280 121289 121283 121302, overlap 121294 121293 121301 121302 CAACATGGCAGCAAT CTAGCTGCAAGATTGCATTTG TTATTC TAGCTGCAATCTAGCAGCATG TTTTTGATACATAAA YpsIP31758_B0109 121673 - 121503 - | hypothetical protein TERM 133 121641 - 121664 + g 79 -11.8 -3.17941 | opp_overlap 121640 121645 121655 AGAGGGTGAATCGAG GATAGCGGCA ATCA TGCTGCTATC TTGCTGCAATCTAAT YpsIP31758_B0110 122942 - 121779 - | type IV secretion system protein DotB YpsIP31758_B0111 123790 - 122942 - | putative type IV secretion system protein DotC TERM 134 123190 - 123178 - G 71 -2.7 -4.9448 | ATTTATGAAATAAAA TCATC CCA GATAA ATCACGATTCATACG TERM 135 123654 - 123668 + g 80 -2.8 -5.40004 | overlap 123649 123651 GCTTGAGTCCTTGCA GAAGCA GCT TGATTC TTTTTTGATTTGATA YpsIP31758_B0112 124260 - 123805 - | putative lipoprotein TERM 136 124800 - 124790 - H 75 -2.4 -5.31855 | CACTAACAACAAAAA GGAG TAA CGCC CAATGTGACCAAGAA TERM 137 124881 - 124868 - H 82 -2.3 -5.65496 | opp_overlap 124868 CATCAAAAAGAAAAA GAGTG AGAA CACAC TATAATTGCTTTAAT TERM 138 125869 - 125857 - g 100 -9.1 -5.18371 | opp_overlap 125855 125857 CCTGATAAAAGAAAA GTCGC TGA GCGAC TATTTCATCAAGCTC TERM 139 125857 - 125869 + G 71 -9.1 -3.45324 | opp_overlap 125857, overlap 125855 CCTGATAAAAGAAAA GTCGC TGA GCGAC TATTTCATCAAGCTC YpsIP31758_B0113 125182 - 126216 + | hypothetical protein YpsIP31758_B0114 126571 - 127365 + | putative type IV secretion system protein IcmL/DotI YpsIP31758_B0115 127367 - 128452 + | putative type IV secretion system protein IcmK/DotH YpsIP31758_B0116 128505 - 129893 + | putative type IV secretion system protein IcmE/DotG YpsIP31758_B0117 129904 - 130590 + | putative type IV secretion system protein IcmG/DotF YpsIP31758_B0118 130601 - 131182 + | putative type IV secretion system protein IcmC/DotIE TERM 140 131244 - 131257 + F 70 -3.9 -4.86621 | opp_overlap 131237 131244 CGACAGGAGTAAAAA TGAAA ACTT TTTCA TTTTTAATTAAGAAT TERM 141 131257 - 131244 - f 70 -3.9 -4.79223 | opp_overlap 131244, overlap 131237 CGACAGGAGTAAAAA TGAAA ACTT TTTCA TTTTTAATTAAGAAT TERM 142 131631 - 131647 + F 71 -2.2 -5.21709 | opp_overlap 131630, overlap 131632 AAATTTAATAATTAT GGAGAG CATCA CTCTCA TTTTTTGCTCTCCAA TERM 143 132034 - 132048 + G 81 -5.7 -4.93296 | AAACAGAAGTGAATT GGGTT GTCAG AACCC TTTTTATGCTACTGC YpsIP31758_B0119 131682 - 132401 + | putative type IV secretion system protein IcmJ/DotN YpsIP31758_B0120 132414 - 133607 + | hypothetical protein TERM 144 133882 - 133858 - g 73 -2.2 -5.01732 | gap 1, overlap 133859 133861 133862 AACCTCTTTAAAAAA TGACGTCACAG ACTA CTGCGACAT-A GAAACTGTCGATGCC TERM 145 134275 - 134259 - g 71 -4.5 -4.56914 | CTATTGAAAGCAAAA TTTCTCA GGA TGAAAAA AATAGATTTAGGAAA TERM 146 135378 - 135397 + G 74 -9.3 -3.70109 | opp_overlap 135376 135378 CCGCAACCATCAACA GCAGGCA CATAGA TGCCTGC TTATTGGGTGGTGTA TERM 147 135397 - 135378 - g 70 -10 -3.20227 | opp_overlap 135378, overlap 135376 CCGCAACCATCAACA GCAGGCAC ATAG ATGCCTGC TTATTGGGTGGTGTA YpsIP31758_B0121 133805 - 136900 + | putative type IV secretion system protein IcmB/DotO TERM 148 138370 - 138349 - g 80 -3 -5.42259 | gap 1, overlap 138350 138351 138363 CTAGCCTGAAAAAAA GC-TCCGCT GAAGA AGCAGATGC TACATGGGAAAACAC TERM 149 139434 - 139409 - g 80 -2.6 -5.40072 | opp_overlap 139399 TGGTTTTGAAAAAAA CATAAAAGTC TTTTTC GACTTCTCTG ATGATGAAGAGACTG TERM 150 139515 - 139499 - g 73 -8 -4.06177 | TAAACAAGAGAATAA CCGTCA ATTAA TGACGG CCATGTACCACGCAC YpsIP31758_B0122 136944 - 139748 + | putative type IV secretion system protein IcmO/DotL TERM 151 139962 - 139945 - g 85 -5.7 -5.07486 | GAGTTCCAAGAAAAA TTGAATA CGGT TATTCAA GAAAGAGAAAAAGAA YpsIP31758_B0123 139846 - 140271 + | DNA-binding protein H-NS TERM 152 140342 - 140303 - f 73 -7.5 -4.0911 | gap 1, opp_overlap 140313, overlap 140308 140313 TAAAATGAATAATAA TTAGATAAAACAGGTGTC GTAAT GACACTTGTTTTAT-TAA CCTCTTTACTGGATT TERM 153 140338 - 140308 - f 73 -9.9 -3.0663 | opp_overlap 140313, overlap 140303 140313 TGAATAATAATTAGA TAAAACAGGTGTC GTAAT GACACTTGTTTTA TTAACCTCTTTACTG TERM 154 140333 - 140313 - f 73 -5.4 -4.6391 | opp_overlap 140313, overlap 140308 140303 AATAATTAGATAAAA CAGGTGTC GTAAT GACACTTG TTTTATTAACCTCTT TERM 155 140313 - 140333 + F 91 -8.3 -4.6759 | opp_overlap 140313 140308 140303 AATAATTAGATAAAA CAGGTGTCG TAA TGACACTTG TTTTATTAACCTCTT YpsIP31758_B0124 140366 - 140995 + | hypothetical protein YpsIP31758_B0125 141048 - 141527 + | putative conjugal transfer protein TrbN YpsIP31758_B0126 141546 - 142061 + | single-strand binding protein family protein TERM 156 142089 - 142107 + F 100 -12.4 -5.26918 | opp_overlap 142088 142086 142089 AATCAGGTAAAACAG GGGGAGCC ACA GGCTTCCC TTTTTTATCGGATAT TERM 157 142107 - 142089 - f 75 -10.2 -2.82324 | opp_overlap 142089, overlap 142088 142086 AATCAGGTAAAACAG GGGGAGCC ACA GGCTTCCC TTTTTTATCGGATAT YpsIP31758_B0127 142138 - 142401 + | resolvase family site-specific recombinase YpsIP31758_B0128 143153 - 143992 + | hypothetical protein TERM 158 144102 - 144079 - f 70 -7.4 -3.90048 | overlap 144077 144082 CGGTGCTGAAAAAGA GGAGACTGAC GAAC GTCAGTCCTC AGAACATCAAATATA TERM 159 144099 - 144082 - f 73 -9.9 -3.01831 | overlap 144077 144079 TGCTGAAAAAGAGGA GACTGAC GAAC GTCAGTC CTCAGAACATCAAAT TERM 160 144130 - 144142 + F 76 -2.7 -5.40072 | ATAATAGTGACTATT TATGG TTG TCATA TTTTTTTCAACCGCA YpsIP31758_B0129 144749 - 145591 + | hypothetical protein YpsIP31758_B0130 145705 - 145857 + | hypothetical protein TERM 161 145905 - 145918 + F 100 -9.5 -4.88405 | opp_overlap 145898 145904 145905 ACAAAGCACCATAAC GCCCC GTAA GGGGC TTTTCTTTGCCCGTT YpsIP31758_B0131 146089 - 146232 + | hypothetical protein TERM 162 146346 - 146383 + F 78 -7.1 -4.4831 | overlap 146349 TCTAATGTATTTGTG CTATTTATGTTCCCACT GTAT AGTGGCGGCATAAATCG TTATTTTTGGTAGAT TERM 163 146494 - 146504 + F 91 -8.2 -4.65933 | opp_overlap 146491 146489 ATATTGACAATACGG CGGC GGG GCCG TTTATTTTGAGCGTC YpsIP31758_B0132 146606 - 146995 + | hypothetical protein YpsIP31758_B0133 147016 - 147396 + | hypothetical protein TERM 164 147445 - 147459 + T 73 -10 -2.90496 | overlap 147442 CTTTCGGGTGGCCCC CCTCAC ATT GTGAGG TAGTTTGGGGAGAAA TERM 165 147497 - 147514 + T 71 -6.9 -4.16226 | opp_overlap 147498, overlap 147498 147503 AAGGTCGAGCTGAAG AGGGGAC AACT GTCCCCG TTGTGTTTTTATCTG TERM 166 147513 - 147498 - T 76 -10.4 -3.05963 | opp_overlap 147497 147498 147503 AGGTCGAGCTGAAGA GGGGAC AACT GTCCCC GTTGTGTTTTTATCT TERM 167 147498 - 147513 + T 77 -10.4 -3.08109 | opp_overlap 147498, overlap 147497 147503 AGGTCGAGCTGAAGA GGGGAC AACT GTCCCC GTTGTGTTTTTATCT YpsIP31758_B0134 147979 - 147539 - | hypothetical protein TERM 168 148048 - 148018 - H 75 -8.4 -3.85698 | opp_overlap 148019 148026, overlap 148026 GGCTTTGGCCACAAA CAAAAAAACCTCCC GTT AGGAGGTTTTTTCT TTCGTTGAACACTTC TERM 169 148019 - 148047 + H 80 -9 -3.90856 | opp_overlap 148018 148026, overlap 148026 GCTTTGGCCACAAAC AAAAAAACCTCC CGTTA GGAGGTTTTTTC TTTCGTTGAACACTT TERM 170 148026 - 148040 + H 100 -7.1 -5.72053 | opp_overlap 148018 148026, overlap 148019 CCACAAACAAAAAAA CCTCC CGTTA GGAGG TTTTTTCTTTCGTTG TERM 171 148040 - 148026 - H 100 -7.8 -6.02919 | opp_overlap 148026 148019, overlap 148018 CCACAAACAAAAAAA CCTCCC GTT AGGAGG TTTTTTCTTTCGTTG TERM 172 148155 - 148170 + H 76 -2.6 -5.32599 | opp_overlap 148154, overlap 148154 TCCACCACATCTAAC TATTAC AATA GTGATA TTTTTGTGTTTTGTC TERM 173 148556 - 148541 - H 70 -7.6 -3.57507 | ATTAACCCAAATCAA TGATCC ATAA GGATCA ATCCAACTCCCCCCT TERM 174 148699 - 148724 + H 77 -10.5 -3.22102 | overlap 148697 TTTGTTATTTTGCAT GGCCATCTG TAAGCAAT CAGATGGCC TCTTATAAAAAGTAT TERM 175 148730 - 148750 + H 71 -4.9 -4.58663 | TCAGATGGCCTCTTA TAAAAAGTA TCA TATTTTTTA TTTTTACCAACTGGT YpsIP31758_B0135 149279 - 149560 + | hypothetical protein TERM 176 150617 - 150641 + F 73 -8.7 -3.4529 | opp_overlap 150614 150617 ACTTCACAACAATAG GTGAGAAAAAA CTT TTATTTCTCAC TTATAGTGCTACTAT YpsIP31758_B0136 150687 - 151715 + | plasmid replication protein YpsIP31758_B0001 153015 - 151696 - | hypothetical protein TERM 177 151801 - 151773 - G 83 -11.9 -3.47751 | TGCAATAATTTACAA TGAGCTGAAGA TCCTCTC TCTTCAGCTCA AGCCTACTATCAAAC SEQUENCE gi|153946813|ref|NC_009708.1| Yersinia pseudotuberculosis IP 31758, complete genome (length 4723306) mioC 461 - 21 - | flavodoxin YpsIP31758_0002 1015 - 554 - | DNA-binding transcriptional regulator AsnC asnA 1185 - 2177 + | asparagine synthetase AsnA TERM 1 2205 - 2233 + T 100 -9.5 -4.84529 | ATCCCCCTATGCTAA CTCGCGATAACGG TAT CAGTCATCGCGGG TTTTTAACTTTATCA YpsIP31758_0004 3742 - 2276 - | hypothetical protein TERM 2 3365 - 3377 + g 87 -6.9 -5.02476 | overlap 3366 CGTTTGCAGGCTATC TCCGC CTG GCGGG TTTTTTGCCAGGTCT YpsIP31758_0005 5284 - 3746 - | regulatory ATPase RavA TERM 3 4725 - 4735 + g 79 -3.2 -5.18726 | CTGATCAGCAGTGAG CGGA AAT TCTG TTTTTCTTGTACCCG TERM 4 5640 - 5661 + G 71 -3 -4.94902 | ATATTGGCACCAGCC CACTCTAT ACCTTG AGAGAGTG TTTTTCTGGTCATTA TERM 5 6992 - 6959 - g 75 -11.7 -2.72471 | gap 1, opp_overlap 6960 6962, overlap 6958 6962 GCTTCACTAGAGAAG TCACCGCCAGTACGGG TAC CCGGTAC-GGCGGTGT ATATGTCGCGAGCAA TERM 6 6960 - 6991 + G 100 -15.2 -2.98823 | gap 1, opp_overlap 6959 6958 6962, overlap 6962 CTTCACTAGAGAAGT CACCGCCAGTACGGG TAC CCGGTAC-GGCGGTG TATATGTCGCGAGCA TERM 7 6989 - 6962 - g 78 -12 -2.64051 | gap 1, opp_overlap 6960 6962, overlap 6959 6958 TCACTAGAGAAGTCA CCGCCAGTACGGG TAC CCGGTAC-GGCGG TGTATATGTCGCGAG TERM 8 6962 - 6989 + G 81 -12 -3.05022 | gap 1, opp_overlap 6962 6959 6958, overlap 6960 TCACTAGAGAAGTCA CCGCCAGTACGGG TAC CCGGTAC-GGCGG TGTATATGTCGCGAG kup 5558 - 7426 + | potassium transport protein Kup TERM 9 7459 - 7427 - f 76 -10 -3.29211 | gap 1, opp_overlap 7431, overlap 7422 7415 7431 CAAGTGGAAATTTAA TTG-AGAGGCCGTTA ATCA TAACGGCCTCTTCTA TCATCATTCACACTA TERM 10 7431 - 7454 + F 100 -15.4 -3.57731 | opp_overlap 7427 7422 7415 7431 TGGAAATTTAATTGA GAGGCCGTTA ATCA TAACGGCCTC TTCTATCATCATTCA TERM 11 7454 - 7431 - f 100 -15.4 -2.58812 | opp_overlap 7431, overlap 7427 7422 7415 TGGAAATTTAATTGA GAGGCCGTTA ATCA TAACGGCCTC TTCTATCATCATTCA rbsD 7631 - 8050 + | D-ribose pyranase rbsK 8101 - 9027 + | ribokinase YpsIP31758_0010 9047 - 9250 + | hypothetical protein YpsIP31758_0009 10671 - 9247 - | major facilitator transporter TERM 12 9445 - 9431 - G 74 -4.2 -4.92783 | overlap 9432 9438 AACCCATCATAAAAA CGCAAC ACA GTCGCA CTGATAGCAATCCCA YpsIP31758_0011 11440 - 10751 - | GntR family transcriptional regulator TERM 13 11326 - 11343 + g 81 -12.7 -2.6544 | overlap 11325 CCAACTCTATTTCGC CGGGCAG TATA CTGCCCG CTTCATATTCTCCTG TERM 14 13843 - 13806 - H 78 -5.7 -4.7629 | opp_overlap 13800 13806 13809, overlap 13809 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 15 13840 - 13809 - H 78 -7.4 -4.47888 | opp_overlap 13806 13800 13809, overlap 13806 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 16 15299 - 15281 - H 82 -10.3 -3.57798 | overlap 15294 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 17 15759 - 15733 - H 70 -9.4 -2.75844 | opp_overlap 15747 15755, overlap 15732 15735 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 18 15806 - 15795 - H 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 19 16918 - 16928 + H 74 -6.8 -4.27316 | opp_overlap 16918 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 20 17183 - 17149 - H 95 -9.2 -4.50627 | opp_overlap 17156 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGCGCGAAACACA TERM 21 17156 - 17176 + H 100 -10.4 -4.8048 | opp_overlap 17149 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 22 18823 - 18844 + G 79 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YpsIP31758_0015 17641 - 18849 + | IS285, transposase mobB 19440 - 18907 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 23 19224 - 19238 + g 79 -10 -3.87815 | opp_overlap 19226 GTGCCCAACGGCAAT CACTGG CGA CCAGTG TTTGTAGCGCTCCAG TERM 24 19420 - 19400 - G 93 -14.1 -3.44051 | opp_overlap 19398 CCTGTACCACTATAA GCCGCTATT CCT AATAGCGGC GGTGACTTGTAGTTC mobA 20024 - 19437 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 25 20354 - 20344 - g 71 -6.8 -4.15565 | TCTATCATCTGAAAA TGCG GGG CGCA GCCTCAACCGAGGTG YpsIP31758_0018 20178 - 20447 + | hypothetical protein YpsIP31758_0019 20538 - 21524 + | serine/threonine protein kinase dsbA 21552 - 22175 + | periplasmic protein disulfide isomerase I TERM 26 22192 - 22208 + F 100 -6.5 -6.11392 | opp_overlap 22192 22191 TTAGTACATAAAGAG GGGGC TTTTGTT GCCCC TTTTTTTATTTATTT TERM 27 22813 - 22846 + G 100 -10.5 -4.72272 | gap 1 ATGCTACGCAGTCTG CTGCTGCAATATCGAC CAA GTC-ATGTTGCAGTAG TTTTTGATGCAAAAG polA 22666 - 25464 + | DNA polymerase I TERM 28 25725 - 25695 - T 76 -11.1 -2.62184 | opp_overlap 25697 TTTGGCTGTATATTA GCCGCCCCAGTCA TTTAT TGACTGGGGCGTT TTTTATGGGGATTTT TERM 29 25697 - 25723 + T 100 -18.1 -5.25803 | opp_overlap 25695 TGGCTGTATATTAGC CGCCCCAGTCA TTTAT TGACTGGGGCG TTTTTTATGGGGATT YpsIP31758_0022 26522 - 25872 - | GTPase EngB TERM 30 27067 - 27119 + H 100 -13.6 -3.99405 | gap 1, opp_overlap 27057 27082, overlap 27082 GGATATCCTTCCGCA GAAG-GTGCGAAAAAAGGCGACAGG TTAA CCTGCCGCCTTTTTTCTTTCTCTTC TTTCTGCTAGATTCC TERM 31 27082 - 27103 + H 100 -11.5 -5.7827 | opp_overlap 27082, overlap 27067 GAAGGTGCGAAAAAA GGCGACAGG TTAA CCTGCCGCC TTTTTTCTTTCTCTT TERM 32 27103 - 27082 - H 100 -13.7 -5.03145 | opp_overlap 27067 27082 GAAGGTGCGAAAAAA GGCGACAGG TTAA CCTGCCGCC TTTTTTCTTTCTCTT YpsIP31758_0023 27266 - 27832 + | hypothetical protein TERM 33 28811 - 28785 - g 71 -8.6 -3.70102 | opp_overlap 28784 ACGTAAAATCAAAGA CGCTGATCTGCC AAC GGCGGAGCAACG GTTGGATATTTTGCA hemN 28015 - 29388 + | coproporphyrinogen III oxidase TERM 34 29427 - 29394 - T 83 -11.8 -2.80994 | gap 1, opp_overlap 29398 29405 TGTAATCTGACGATA TCACCCTC-AGTGCG GTTAT CGCTCTTGAGGGTGA CCATCTGGCGGGAAC ntrC 30854 - 29442 - | nitrogen regulation protein NR(I) TERM 35 29824 - 29835 + g 74 -4.4 -4.98531 | overlap 29831 AGCGCCGCTTCGGTC TCTG GATG CAGA TTTTTGCTTTCCACG ntrB 31911 - 30862 - | nitrogen regulation protein NR(II) TERM 36 32063 - 32046 - R 100 -11.3 -5.28826 | AAAGTGGAGAAAAAA GCCCATC CTAA GATGGGC CAAAAGTTTCCACGG glnA 33573 - 32164 - | glutamine synthetase TERM 37 32786 - 32796 + g 71 -6.8 -4.13945 | CCTGAGCCGTTATCG CCGA ACA TCGG TTTTGGCATAAAGGT typA 34135 - 35958 + | GTP-binding protein TypA/BipA TERM 38 35980 - 36004 + F 100 -14.3 -3.75738 | TTTGCATTGTTGATA CTTAGGGCGCT CAA GGCGCCCTGAG TTCTTACTCCTCCTA YpsIP31758_0029 36281 - 36871 + | phosphatase rbn 36968 - 37852 + | ribonuclease BN dtd 37859 - 38296 + | D-tyrosyl-tRNA deacylase YpsIP31758_0032 38482 - 39405 + | acetyltransferase domain-containing protein TERM 39 39444 - 39425 - T 79 -8.6 -4.11216 | opp_overlap 39425 CTGGTACCCTTAAAA TCACTGAC ATGA GCCAGTGA TTTGCCGTCGGATGA YpsIP31758_0033 41249 - 39540 - | asmA family protein TERM 40 39961 - 39972 + g 73 -2.2 -5.03715 | gap 1, overlap 39959 GAACCGGACCATACG CC-CC ATT GGTGG TTTTTTGCCAGTAAT TERM 41 41370 - 41345 - RH 100 -6.9 -5.67063 | gap 1, opp_overlap 41345 CGGACCATAAAAAAA TGGCCGG-CATC ATT AATGACCGACCA TTTCAGTGATGTGTT yicE 42781 - 41396 - | xanthine permease TERM 42 41450 - 41428 - GH 72 -9.8 -2.79952 | overlap 41425 41440 41442 AGAGTAAGTTAAGTA CGATGGCAGT AAT ACCGCCAGCG GCAATCCCAGAAGAG TERM 43 41851 - 41863 + gH 78 -9.1 -3.88498 | opp_overlap 41850 CATTGGCCAGTACAC CGCCT TTT AGGCG TTTCATATATAACGG TERM 44 42404 - 42425 + gH 71 -2.9 -5.00616 | CAGCGCCGCCATCAT CGTTGGG ATATCCGC CCCACCG TTTTTTAGCGCCAGC YpsIP31758_0035 42780 - 42899 + | hypothetical protein gltS 43019 - 44233 + | sodium/glutamate symporter TERM 45 44337 - 44322 - T 78 -9 -3.81146 | GCTGGGAATTAAGAA GCCTCA TGAA TGAGGC TGAGGTTATTGACAA TERM 46 44416 - 44442 + T 72 -7.2 -3.9749 | gap 1, opp_overlap 44404, overlap 44415 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT recG 46680 - 44599 - | ATP-dependent DNA helicase RecG trmH 47373 - 46681 - | tRNA guanosine-2'-O-methyltransferase TERM 47 46992 - 47006 + g 77 -4.2 -5.14563 | CCAGTGCCAGCGCTT CTGGTG AAA TACCGG TTTTTTCCTGACCCA spoT 49487 - 47379 - | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase TERM 48 48287 - 48265 - G 75 -7.6 -4.28977 | opp_overlap 48265, overlap 48266 ACAACATAGGCAAAA TCGACCGGTG TGG CACCAGCCGG TAATTCCACAATGCG TERM 49 48286 - 48266 - G 76 -11.1 -3.16302 | opp_overlap 48265, overlap 48265 CAACATAGGCAAAAT CGACCGGTG TGG CACCAGCCG GTAATTCCACAATGC TERM 50 48931 - 48949 + g 73 -4.5 -4.68593 | opp_overlap 48931 TAGAGTGCTTCAAAA CCCAGCT CTTCC AGCTCGG TTTTTAAATGATGAA rpoZ 49782 - 49507 - | DNA-directed RNA polymerase subunit omega gmk 50460 - 49837 - | guanylate kinase TERM 51 50405 - 50393 - G 80 -9.1 -4.15044 | opp_overlap 50389 50393 TGTGTTTTTAACAAA GCCTG AAT CAGGC TTGATTTCCCTGCCC TERM 52 50393 - 50405 + g 71 -9.1 -3.54408 | opp_overlap 50393, overlap 50389 TGTGTTTTTAACAAA GCCTG AAT CAGGC TTGATTTCCCTGCCC TERM 53 51227 - 51204 - g 71 -7.4 -4.02206 | gap 1 AACTCAAAGATGAAA CCGCCCT-CAC AAG GTGGATGGCGG GGCGGAAAAATCTCT TERM 54 52114 - 52126 + G 73 -3.3 -4.8543 | ACGCTTACCACATGG CTGTG AAC CTCAG TTTTTATCCCGCTTG ligA2 50861 - 52564 + | NAD-dependent DNA ligase LigB YpsIP31758_0043 53201 - 52584 - | hypothetical protein TERM 55 53129 - 53108 - G 71 -7.3 -4.10566 | AGGCAATAATAATAA CGCCAAACA TATC CATTTGGCG GCGACCCGCAGCCAG TERM 56 53657 - 53688 + H 100 -10.1 -5.5208 | opp_overlap 53660 53664, overlap 53660 GGCTTTTCCTGCGAA CCAGCAAGCCCGC AGATTA GCGAGCTTGCTAG TTTTTTGTGTTCTGG TERM 57 53660 - 53685 + H 80 -10.4 -3.50491 | opp_overlap 53660 53664, overlap 53657 TTTTCCTGCGAACCA GCAAGCCCGC AGATTA GCGAGCTTGC TAGTTTTTTGTGTTC TERM 58 53685 - 53660 - H 88 -12.6 -2.70932 | opp_overlap 53660 53657, overlap 53664 TTTTCCTGCGAACCA GCAAGCCCGC AGATTA GCGAGCTTGC TAGTTTTTTGTGTTC YpsIP31758_0044 53942 - 54313 + | hypothetical protein YpsIP31758_0045 54542 - 54330 - | hypothetical protein YpsIP31758_0046 55174 - 54572 - | putative phage terminase, small subunit YpsIP31758_0047 56997 - 55921 - | hypothetical protein YpsIP31758_0048 57666 - 57544 - | hypothetical protein YpsIP31758_0049 58774 - 57623 - | hypothetical protein TERM 59 58464 - 58493 + gr 71 -9.3 -3.04322 | gap 1 ACCTGTTGGCGAGAT TTTGCGC-TCCCCG AAA CGGGGGTGCTCAAA TCTTCAACAATTACG YpsIP31758_0050 59781 - 58771 - | hypothetical protein YpsIP31758_0051 60215 - 59796 - | hypothetical protein TERM 60 60187 - 60202 + g 88 -7.5 -5.13343 | opp_overlap 60186 ACCTGTCCGATAATG CCCGC CTCTGC GCGGG TTTTCTTTTGCATTA YpsIP31758_0052 60433 - 60215 - | AlpA family protein TERM 61 60379 - 60346 - G 79 -10.9 -3.55444 | opp_overlap 60347 GGTCTATTGTTGAAA CGCTAACGCCTAGCA TTTC TGCAAGGCGAAAGCG CCGGATATACCCAGA TERM 62 60557 - 60502 - R 100 -11.4 -4.00532 | opp_overlap 60508 60508, overlap 60508 TCTGTAAACATGAAA GCATAAGGGAGAGTTAACTCACTGTA CCCT TACAATAAGTTAACTCTACCCTTTCC CATTAACGGCTGTTC TERM 63 60508 - 60551 + r 77 -11.2 -2.79492 | opp_overlap 60508 60502, overlap 60508 AACATGAAAGCATAA GGGAGAGTTAACTCACTGTA CCCT TACAATAAGTTAACTCTACC CTTTCCCATTAACGG TERM 64 60508 - 60552 + r 84 -11 -3.66178 | gap 1, opp_overlap 60508 60502, overlap 60508 AACATGAAAGCATAA GGG-AGAGTTAACTCACTGTA CCCT TACAATAAGTTAACTCTACCC TTTCCCATTAACGGC TERM 65 60551 - 60508 - R 100 -15.6 -3.64523 | opp_overlap 60508 60508, overlap 60502 AACATGAAAGCATAA GGGAGAGTTAACTCACTGTA CCCT TACAATAAGTTAACTCTACC CTTTCCCATTAACGG YpsIP31758_0053 61440 - 60547 - | hypothetical protein TERM 66 60613 - 60625 + g 77 -4.1 -5.16572 | ATTTGTGATCATTAA TGGAG GAA CTTCA TTTTTTCGCTTAAGT YpsIP31758_0054 62805 - 61537 - | phage integrase family site specific recombinase TERM 67 62833 - 62874 + r 80 -8.7 -4.03234 | opp_overlap 62832 62833 AACATTGAATAGAAG GGTGTACCCAAAGTGATGT ACAC AAAACTCATTGGGTACACC TTTGTGTACACGGCA TERM 68 62954 - 62937 - R 87 -5.5 -5.58179 | opp_overlap 62937 62949 CATGATAATAAAAAA GCCCG TCTATATG CGGGC TTTGCTGGCTTTTTG YpsIP31758_0055 63858 - 62995 - | hypothetical protein rph 63985 - 64701 + | ribonuclease PH TERM 69 64710 - 64726 + F 100 -9.4 -5.41143 | opp_overlap 64707 ATCATAAATTTATTA GGCGAC GGATA GTCGCC TTTTTTTACCCGCTA pyrE 64868 - 65515 + | orotate phosphoribosyltransferase TERM 70 65542 - 65599 + T 100 -21.6 -3.68569 | gap 1, opp_overlap 65533 65552, overlap 65543 65544 65564 ATAACATGGGGTAAT C-CCGAATCAAGCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGCTTGATTCGCTG TTCTCTCTATGTCTT TERM 71 65543 - 65597 + T 100 -25.3 -3.40967 | opp_overlap 65533 65552, overlap 65542 65544 65564 TAACATGGGGTAATC CCGAATCAAGCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGCTTGATTCGC TGTTCTCTCTATGTC TERM 72 65544 - 65596 + T 100 -28.8 -2.63857 | opp_overlap 65533 65552, overlap 65543 65542 65564 AACATGGGGTAATCC CGAATCAAGCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGCTTGATTCG CTGTTCTCTCTATGT TERM 73 65588 - 65552 - T 100 -15.2 -3.35867 | opp_overlap 65544 65543 65542 65564 GTAATCCCGAATCAA GCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGC TTGATTCGCTGTTCT TERM 74 65564 - 65576 + T 77 -6.2 -4.68424 | opp_overlap 65552, overlap 65544 65543 65542 CAAGCTACGCCAAGA GGGC CGTTT GCCC TTTTTGCGTAGCTTG YpsIP31758_0058 66246 - 65650 - | nucleoid occlusion protein TERM 75 65780 - 65815 + g 71 -4 -4.82901 | opp_overlap 65779, overlap 65779 65780 TGGGTGGCCAGTAAC GCTTCATCATGGATAA AGCC TTGTCCATCACGCAGC TTTTTCTCACGAAGG TERM 76 65983 - 66000 + g 77 -4.8 -4.90906 | CAGCAGGATTAAGCG GAGGCG ATTAAA CGTCTC TTTTTCATCTTGTAG TERM 77 66299 - 66326 + r 91 -12 -3.56562 | gap 1, opp_overlap 66294 AAAACCCAAACACCG GCCGCTCTGGGAA CAA TGCCCAG-GCGGC TTATGTGATAGCTTT dut 66823 - 66368 - | deoxyuridine 5'-triphosphate nucleotidohydrolase coaBC 68018 - 66804 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 78 67849 - 67838 - G 71 -7.2 -4.04209 | GCAAATCATCAGAAA CGGG ATAG CCCG AGACTGCCTGTAGCG radC 68215 - 68883 + | DNA repair protein RadC rpmB 69146 - 69382 + | 50S ribosomal protein L28 rpmG 69394 - 69561 + | 50S ribosomal protein L33 TERM 79 69568 - 69547 - f 83 -8.9 -4.07877 | GTACTCTATAAAGAA GCTAAAATT AAGT AATTTTAGC GGACTAAGAAAAACC TERM 80 69603 - 69576 - f 95 -12.8 -3.16683 | opp_overlap 69582, overlap 69582 ATTTTAGCGGACTAA GAAAAACCCGGC CTTG GCCGGGTTTTTT ATTATATAAAGTACA TERM 81 69597 - 69582 - f 100 -11.8 -5.1356 | opp_overlap 69582, overlap 69576 GCGGACTAAGAAAAA CCCGGC CTTG GCCGGG TTTTTTATTATATAA TERM 82 69582 - 69597 + F 100 -11.8 -5.60689 | opp_overlap 69576 69582 GCGGACTAAGAAAAA CCCGGC CTTG GCCGGG TTTTTTATTATATAA mutM 69644 - 70453 + | formamidopyrimidine-DNA glycosylase coaD 70938 - 70459 - | phosphopantetheine adenylyltransferase YpsIP31758_0066 71717 - 70935 - | glycosyl transferase, group 2 family protein kdtA 72995 - 71718 - | 3-deoxy-D-manno-octulosonic-acid transferase rfaC 74380 - 73415 - | ADP-heptose:LPS heptosyl transferase I rfaF 75444 - 74380 - | ADP-heptose:LPS heptosyltransferase II rfaD 76407 - 75475 - | ADP-L-glycero-D-mannoheptose-6-epimerase kbl 76653 - 77864 + | 2-amino-3-ketobutyrate coenzyme A ligase tdh 77874 - 78899 + | L-threonine 3-dehydrogenase TERM 83 78912 - 78952 + T 86 -11.3 -3.3506 | opp_overlap 78950, overlap 78905 TAGTTTATCCCCTTC GGGCTTGGTGTTGCA AAACTACCCGC TGCGATACCAAGCCC TTGTCAGGATTTACG YpsIP31758_0073 80047 - 79037 - | divergent polysaccharide deacetylase YpsIP31758_0074 81441 - 80071 - | hypothetical protein TERM 84 80314 - 80328 + g 76 -10 -3.76952 | opp_overlap 80313 80310, overlap 80321 AGCCAGTAAAACACG GCCATC GGC GATGGC TTTGACTTCGCTGCC TERM 85 81151 - 81165 + g 93 -2.1 -6.13503 | TTTTAGTTGATCCAG CAATG AACTG CGTTG TTTTTTTTGTTGCTG TERM 86 81394 - 81352 - G 82 -12.1 -3.11634 | opp_overlap 81381, overlap 81356 CGGCAGACGACTCAA CTTATCTGACAGCAGAGAG GGAGA CTCTCTACCGTCAGAGACG GCATCTTTCGTAGTT TERM 87 81390 - 81356 - G 100 -15.9 -2.55722 | opp_overlap 81381, overlap 81352 AGACGACTCAACTTA TCTGACAGCAGAGAG GGAGA CTCTCTACCGTCAGA GACGGCATCTTTCGT gpmI 82998 - 81451 - | phosphoglyceromutase TERM 88 81615 - 81644 + g 71 -8.6 -3.74747 | gap 1 GGCTGGTATGGGCGG TGTGTG-CCTGGC CAGTT GCCGGGTCACGCA TTTGCTCAGCGTTGC TERM 89 81991 - 82016 + g 73 -5.4 -4.51097 | overlap 81980 GACGTGAGCATATTT CTCAGTTTCG GAAATG CGTAACTGGG TTTTATCATGCTTCA TERM 90 82577 - 82565 - G 74 -9.1 -3.6269 | opp_overlap 82564 82565, overlap 82563 GCATGCAGATAAATA GCGGT TGC ACCGC GTTTAGCCGCCAGCT YpsIP31758_0076 83395 - 83829 + | rhodanese domain-containing protein TERM 91 84171 - 84191 + G 79 -10.4 -3.68827 | ACGCCCTGGATGCGC GCGGTGGG CTAGA CCCACTGC TTTAACTCGTCAGTG grxC 83948 - 84196 + | glutaredoxin 3 secB 84284 - 84760 + | preprotein translocase subunit SecB TERM 92 85353 - 85381 + G 71 -10.4 -2.77781 | gap 1, overlap 85349 85373 AGTGAAAAACGTGAT TGCCATCGGTGCA GGTA TGT-CCGATGGCA TCGGTTTTGGTGCGA TERM 93 85373 - 85385 + G 75 -7.7 -4.26076 | overlap 85353 85349 TCGGTGCAGGTATGT CCGAT GGC ATCGG TTTTGGTGCGAATGC gpsA 84760 - 85779 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase cysE 86045 - 86866 + | serine acetyltransferase YpsIP31758_0081 87477 - 86989 - | RNA methyltransferase TERM 94 87984 - 87994 + G 79 -2.4 -5.50723 | TTGGCAGCTCAACTG GGGC TTA GCAC TTTTTATTTTCATCG ada 87666 - 88730 + | ada regulatory protein TERM 95 88767 - 88740 - T 83 -11.4 -3.04461 | gap 1, opp_overlap 88734 CACTGATTCTCAATA TCTGCCCGAACCA CAT TGAT-CGGGCAGA TAGACATTGATCGGG cpxA 90174 - 88798 - | two-component sensor protein TERM 96 88937 - 88950 + g 70 -9.5 -3.18582 | CCTGTTCCTCCCGAC GCCCG ATCT CGGGC TTCATCAGTACGATA TERM 97 89160 - 89149 - G 76 -7.2 -4.35644 | overlap 89150 89151 AGGATTACAAAATAA GGGC CATG GCCC CGGAGGTGCCGTGAC cpxR2 90869 - 90171 - | DNA-binding transcriptional regulator CpxR TERM 98 91187 - 91172 - g 77 -6.8 -4.49316 | ATGATGAACAAGAAA GGCGAC CGCG GTCACC ATAACATGTTTGATG YpsIP31758_0085 91043 - 91531 + | periplasmic stress adaptor protein CpxP TERM 99 91588 - 91606 + F 100 -14.6 -5.71638 | CCATCCCTGTCTTTC GCCCTCCA TGA TGGAGGGC TTTTTTTGCTTATTG YpsIP31758_0086 92209 - 93168 + | putative transposase TERM 100 93453 - 93431 - f 74 -7 -4.2535 | AGACCATAGTGAAAA CGGCGGAATA CGG TATTCCACAG ACCAGAAATTCTCTG fieF 93730 - 94632 + | ferrous iron efflux protein F pfkA 94850 - 95833 + | 6-phosphofructokinase TERM 101 95858 - 95910 + F 100 -13.1 -4.98531 | gap 3, opp_overlap 95869 TCGCTCGTTCGGCAA GCCCTCGAAAT-TGAACTGATCCCAA AAAG TTGGG--CAGTTCACATTGCGAGGGC TTTTTACTTTCAGCC YpsIP31758_0090 96054 - 97043 + | sulfate transporter subunit TERM 102 97171 - 97208 + T 77 -8.5 -3.91897 | gap 1, opp_overlap 97179 TACCAACCGCTTTAT CG-CCAACACCACATCGT TGT ATGTTGTGGTGTTGAACG TTTATCGCTACCGCG YpsIP31758_0091 98069 - 97293 - | hypothetical protein TERM 103 98142 - 98106 - R 71 -8.8 -3.39908 | gap 1, opp_overlap 98137, overlap 98104 98102 98107 TTGCGCCAAAAGACA GGCCACCGAAAAC-AGG ATGA CCTTGTCTTCAGTGGCT AAGCGACGTTTAAAT TERM 104 98141 - 98107 - R 88 -12.3 -2.63623 | gap 1, opp_overlap 98137, overlap 98106 98104 98102 TGCGCCAAAAGACAG GCCACCGAAAAC-AGG ATGA CCTTGTCTTCAGTGGC TAAGCGACGTTTAAA YpsIP31758_0092 99614 - 98187 - | divalent anion:Na+ symporter (DASS) family protein ligK 100393 - 99680 - | hypothetical protein TERM 105 100113 - 100103 - G 87 -6.8 -5.15634 | CAGGTCACCAAAAAA GCCA TCA TGGC ATTCGGAGGTCGGCG YpsIP31758_0094 101127 - 100390 - | GlcNAc-PI de-N-acetylase family YpsIP31758_0095 101264 - 102499 + | LysR family substrate binding transcriptional regulator TERM 106 102691 - 102670 - T 84 -6.5 -4.96848 | opp_overlap 102656 102664 102662 102670 TGGGGTATATAAAAA CCGGCGC TTTTATTT ACGCCGG TTTTTGTGTTGTACC TERM 107 102670 - 102691 + T 85 -5.8 -5.1523 | opp_overlap 102670, overlap 102656 102664 102662 TGGGGTATATAAAAA CCGGCG CTTTTATTTA CGCCGG TTTTTGTGTTGTACC tpiA 103496 - 102729 - | triosephosphate isomerase TERM 108 103540 - 103554 + r 80 -10 -3.70902 | opp_overlap 103537 103540 GGTCAATAATAATGA CTGCCT GAC AGGCAG TTTACCTGTCCAACA TERM 109 103554 - 103540 - R 73 -10 -3.03309 | opp_overlap 103540, overlap 103537 GGTCAATAATAATGA CTGCCT GAC AGGCAG TTTACCTGTCCAACA YpsIP31758_0097 104239 - 103625 - | hypothetical protein YpsIP31758_0098 104381 - 104842 + | hypothetical protein fpr 105984 - 105238 - | ferredoxin-NADP reductase TERM 110 106115 - 106086 - R 70 -7.8 -3.68619 | TCTAACTGATGTAAA CTTTACGGCGCT TTTACG AGCGCCGTGCAG AATAAAAATGATTGC glpX 107149 - 106139 - | fructose 1,6-bisphosphatase II TERM 111 106401 - 106415 + g 74 -9.2 -3.70446 | overlap 106402 CGTAATAACTCTTGT TCGCCG ATG CGGCGG TTATCTTCACTGTCG TERM 112 106402 - 106414 + g 71 -10.5 -2.81786 | overlap 106401 GTAATAACTCTTGTT CGCCG ATG CGGCG GTTATCTTCACTGTC TERM 113 107255 - 107271 + r 70 -7.3 -3.85698 | overlap 107251 TACTCTTTTTACCCG CATGACT GCC GGTCATG TTTCTCACAACGAAA TERM 114 107311 - 107289 - R 100 -11.3 -4.93365 | opp_overlap 107284 107289 TCTCACAACGAAAAA CGCGCCATC GGGGG GATAGCGCG TTGTGTTTGGTTTAA TERM 115 107289 - 107311 + r 80 -9.1 -3.93578 | opp_overlap 107289, overlap 107284 TCTCACAACGAAAAA CGCGCCATC GGGGG GATAGCGCG TTGTGTTTGGTTTAA glpK 108941 - 107418 - | glycerol kinase TERM 116 107448 - 107459 + g 75 -3.6 -5.01732 | TTCCCAATCCCGGGC GCGG GCCA CTGC TTTTTTCCAGCCCTT TERM 117 108125 - 108135 + g 82 -5.4 -5.0538 | GCAGGAAGCAACCCG TACC GTA GGTA TTTTTTGCCATGCCC glpF 109966 - 109118 - | glycerol uptake facilitator protein YpsIP31758_0103 110674 - 110913 + | hypothetical protein TERM 118 111044 - 111015 - f 100 -13.7 -4.44046 | opp_overlap 111020 GTCAGCGGAAATAAA GTAAAGGGCGATA TCAG TATCGCCCTTTTC TGTGGGTGCGCCGAT TERM 119 111020 - 111039 + F 100 -12.2 -4.55287 | opp_overlap 111015 CGGAAATAAAGTAAA GGGCGATA TCAG TATCGCCC TTTTCTGTGGGTGCG YpsIP31758_0104 111088 - 111228 + | hypothetical protein YpsIP31758_0105 113347 - 111233 - | bacteriocin ABC transporter, ATP-binding/permease protein YpsIP31758_0106 114632 - 113340 - | MFP family transporter YpsIP31758_0107 114845 - 115084 + | hypothetical protein TERM 120 115093 - 115118 + F 100 -14.1 -3.33815 | opp_overlap 115093 GCAGTAATAAGTAAA TATGCCAGCGT GAAA GCGCTGGCATA TTAATTGAAAGGGAT TERM 121 115118 - 115093 - f 100 -13.4 -4.09805 | opp_overlap 115093 GCAGTAATAAGTAAA TATGCCAGCG TGAAAG CGCTGGCATA TTAATTGAAAGGGAT YpsIP31758_0108 115259 - 115408 + | hypothetical protein YpsIP31758_0109 115714 - 116298 + | hypothetical protein rraA 116900 - 116415 - | ribonuclease activity regulator protein RraA menA 117959 - 117042 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 122 117917 - 117940 + g 73 -9.6 -3.27029 | overlap 117911 117916 117921 GTGGTCGTAGGCTTT CCAGCCAAGC CTGG GTTTGGTTGG TGTTGATTGATAGGC TERM 123 118088 - 118066 - R 70 -2.8 -5.06451 | TATCATGTCAAAAAA TTATGACGTT ATC AAAATCATAA TACGATAAAAACAGG TERM 124 118130 - 118100 - R 100 -15.4 -4.9934 | overlap 118102 118103 118105 ATAATACGATAAAAA CAGGAGTGGGAGGC GAT GCCTCCCACTCGGG ATACTCCATATGGAT TERM 125 118128 - 118102 - R 100 -16.6 -4.10552 | overlap 118100 118103 118105 AATACGATAAAAACA GGAGTGGGAGGC GAT GCCTCCCACTCG GGATACTCCATATGG TERM 126 118127 - 118103 - R 100 -20.1 -3.04705 | overlap 118102 118100 118105 ATACGATAAAAACAG GAGTGGGAGGC GAT GCCTCCCACTC GGGATACTCCATATG TERM 127 118125 - 118105 - R 100 -16.9 -3.0648 | overlap 118103 118102 118100 ACGATAAAAACAGGA GTGGGAGGC GAT GCCTCCCAC TCGGGATACTCCATA hslU 119508 - 118177 - | ATP-dependent protease ATP-binding subunit hslV 120103 - 119579 - | ATP-dependent protease peptidase subunit ftsN 121048 - 120203 - | cell division protein FtsN cytR 122142 - 121114 - | DNA-binding transcriptional regulator CytR TERM 128 122411 - 122364 - RH 78 -5.6 -4.85918 | GATCAGACAATAAAA GATCGGGCGAACCCCTTT TTCTTGACGCTG CAAGGGGTTCGCCATATC CCCTCACCTGAATCA priA 124693 - 122495 - | primosome assembly protein PriA TERM 129 123962 - 123949 - GH 70 -9.5 -2.86747 | overlap 123946 CAGGCACCAGAATTA GGGCC TGAC GGCCC TGCGCTAGAATGTTT YpsIP31758_0117 124672 - 124821 + | hypothetical protein TERM 130 124845 - 124878 + FH 90 -11.2 -3.94409 | opp_overlap 124851, overlap 124848 GATATCAAATCCTGT TAACCATCGTTGCT TATTTT ATCAACGATGGTTA TTTATCAATCGTGTG TERM 131 124848 - 124875 + FH 79 -8.5 -4.09519 | opp_overlap 124851, overlap 124845 ATCAAATCCTGTTAA CCATCGTTGCT TATTTT ATCAACGATGG TTATTTATCAATCGT rpmE 124946 - 125161 + | 50S ribosomal protein L31 TERM 132 125183 - 125197 + T 100 -12.8 -5.45652 | opp_overlap 125183 CCCGTCAGATAAAAA GGCGCC TTG GGCGCC TTTTTTGTTGCCACT TERM 133 125197 - 125183 - T 100 -12.8 -4.96848 | opp_overlap 125183 CCCGTCAGATAAAAA GGCGCC TTG GGCGCC TTTTTTGTTGCCACT TERM 134 125566 - 125594 + T 79 -3.1 -5.31275 | opp_overlap 125566 TGCGTAAAGAAAAAA TGGCTAAGCACAA TTG TTATGCTGAACCA TTTTTTGTAGTGAAA TERM 135 125594 - 125566 - T 100 -7.5 -5.63517 | opp_overlap 125566 TGCGTAAAGAAAAAA TGGCTAAGCACAA TTG TTATGCTGAACCA TTTTTTGTAGTGAAA YpsIP31758_0119 126140 - 125685 - | YiaAB two helix domain-containing protein metJ 126806 - 126489 - | transcriptional repressor protein MetJ metB 127184 - 128344 + | cystathionine gamma-synthase TERM 136 129882 - 129900 + G 85 -10.3 -4.08767 | TTACGATGGTTTGGA TGCCAGC CGGAC GCTGGCA TTTTACAACGATGAA metL 128347 - 130782 + | bifunctional aspartate kinase II/homoserine dehydrogenase II metF 131015 - 131899 + | 5,10-methylenetetrahydrofolate reductase TERM 137 132058 - 132036 - g 74 -9 -3.63569 | overlap 132019 132018 CCAAGGGGGCAATAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG YpsIP31758_0124 131933 - 132115 + | putative transposase, truncation TERM 138 132314 - 132347 + T 87 -5.5 -5.47399 | opp_overlap 132314 TTTAAGGTCAAAGAC CAATTCAAAATCT AAAGAAGA GGGTTTTGAATTG TTTTTTTGACGTTGA TERM 139 132524 - 132549 + T 100 -16.2 -2.52543 | GCGCAAGCCGCAGGT GCAGGAGGGC CGGCTA GCCCTCCTGC TCGGTTGAGGCGACT ppc 135356 - 132720 - | phosphoenolpyruvate carboxylase argE 136899 - 135730 - | acetylornithine deacetylase argC 137144 - 138148 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 138314 - 139090 + | acetylglutamate kinase TERM 140 140125 - 140111 - g 89 -5.7 -5.24796 | overlap 140113 140115 GCCACAGAAGAAAAA TCCAG ATGCG CTGGA GCTCATCCGTGGTAA TERM 141 140584 - 140568 - g 71 -9.3 -3.5594 | opp_overlap 140559 140563 140579, overlap 140569 AAGCGAGTGGCCAAA GGCGGCG TTT CGCCGCA GCAGGTTGCATCGGC TERM 142 140583 - 140569 - g 81 -12.8 -2.73243 | opp_overlap 140559 140563 140579, overlap 140568 AGCGAGTGGCCAAAG GCGGCG TTT CGCCGC AGCAGGTTGCATCGG argH 139257 - 140630 + | argininosuccinate lyase TERM 143 140688 - 140655 - f 76 -10.1 -3.33261 | opp_overlap 140659 TTTTAATCTTGAGAA CGGGGCGGGCCGCTA ATTG CAGCGGCCCGCTTTG CATTAACAGTTACTA TERM 144 140659 - 140684 + F 100 -17.6 -3.75897 | opp_overlap 140655 AATCTTGAGAACGGG GCGGGCCGCT AATTGC AGCGGCCCGC TTTGCATTAACAGTT TERM 145 141280 - 141260 - g 70 -2 -4.92669 | opp_overlap 141279, overlap 141279 GAGATAAAAAAACAA TAATTTCA GTGAA TAAAATTA CAACTTGTATATTAT TERM 146 143023 - 143033 + G 71 -6.8 -4.25256 | GACGATCACTTTGCC GCGA AGG TCGC TTATTTTGATACCCG hasR 141229 - 143721 + | TonB-dependent heme receptor HasR TERM 147 143816 - 143783 - f 100 -18.3 -4.26351 | overlap 143784 CAGCAAGTGAATAAA TCCCGCATCATTGAC GGCA GTCAATGATGCGGGT GAGAGAACACAGCTA TERM 148 143815 - 143784 - f 100 -21.8 -3.15087 | overlap 143783 AGCAAGTGAATAAAT CCCGCATCATTGAC GGCA GTCAATGATGCGGG TGAGAGAACACAGCT hasA 143943 - 144560 + | hemophore HasA TERM 149 144591 - 144567 - f 100 -13.7 -5.06414 | GCCGCTTAAGAAAAA CAGCCAGAAAA TAA CTTTCTGGCTG AGTCACTGATACCAC hasD 144726 - 146534 + | type I secretion ATP-binding protein hasE 146610 - 147938 + | HlyD family hemolysin secretion protein YpsIP31758_0134 148003 - 148806 + | TonB domain-containing protein TERM 150 148894 - 148878 - T 100 -10.8 -4.7254 | opp_overlap 148878 ACGGGGGATTAAAAA CCGGGC GTCGT GCCCGG TTTGAACCGCCTGAG TERM 151 148878 - 148894 + T 89 -11.5 -3.53811 | opp_overlap 148878 ACGGGGGATTAAAAA CCGGGCG TCG TGCCCGG TTTGAACCGCCTGAG YpsIP31758_0135 150376 - 148913 - | dihydrolipoamide dehydrogenase TERM 152 149851 - 149833 - G 80 -7.4 -4.56597 | CGCCTGGGCCAAAAA CTGCCACA GAT TCTGGCAG ATCGTCCCAATTAAA TERM 153 150416 - 150399 - R 100 -11.3 -5.80817 | opp_overlap 150397 CCTAACAGAAAAAAA GGTAGGC CGGA GCCTACC AAGTTACTTCCTATT YpsIP31758_0136 151201 - 150470 - | hybrid peroxiredoxin hyPrx5 TERM 154 150762 - 150752 - G 71 -8.2 -3.65693 | opp_overlap 150752 150751 150748 ATCAGATACTTCAAA CGGG TCG CCCG GTTTGTTTGGCTCGA TERM 155 150766 - 150783 + g 80 -4.2 -5.24129 | overlap 150748 ACGGGTCGCCCGGTT TGTTTG GCTCGA CAAACA TTTTTTCTACCACGC oxyR 151348 - 152265 + | DNA-binding transcriptional regulator OxyR sthA 153648 - 152248 - | soluble pyridine nucleotide transhydrogenase YpsIP31758_0139 153866 - 154501 + | DNA-binding transcriptional repressor FabR YpsIP31758_0140 154514 - 154921 + | hypothetical protein TERM 156 155007 - 155025 + T 100 -10.3 -4.83243 | opp_overlap 155007, overlap 154992 CGTCTTGCCAACTAA GGGCAAC ATGTC GTTGCCC TTTCTTTTATCTGCG TERM 157 155025 - 155007 - T 81 -11 -3.33696 | opp_overlap 154992 155007 CGTCTTGCCAACTAA GGGCAACA TGT CGTTGCCC TTTCTTTTATCTGCG TERM 158 155053 - 155063 + T 76 -6.8 -4.57569 | GCGGTATGAATTATT CGTC AGT GACG TTTTTCCAGCAGTAC trmA 156158 - 155055 - | tRNA (uracil-5-)-methyltransferase TERM 159 157281 - 157269 - gH 73 -9.1 -3.46068 | overlap 157267 TTGCCAAGGGAAATA CTGGC ATG GCCAG TCAGCCAGATCGTGA btuB 156638 - 158512 + | vitamin B12/cobalamin outer membrane transporter TERM 160 158609 - 158583 - gf 100 -13.8 -3.14132 | opp_overlap 158580 158577 CTGTCTGTCTATCAA GAGATTCGGCAA CTG TTGCCGGATCTC CACTATATATATGCT TERM 161 159073 - 159085 + GF 72 -7.7 -3.76775 | opp_overlap 159072 159069 CGGATACTATAGTAT TGGGT TGC ACCCA TTTCCCTCTATTAAC murI 158457 - 159320 + | glutamate racemase TERM 162 161620 - 161583 - f 78 -5.7 -4.7629 | opp_overlap 161583 161577 161586, overlap 161586 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 163 161617 - 161586 - f 78 -7.4 -4.47888 | opp_overlap 161586 161583 161577, overlap 161583 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 164 163076 - 163058 - f 82 -10.3 -3.57798 | overlap 163071 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 165 163536 - 163510 - f 70 -9.4 -2.75844 | opp_overlap 163524 163532, overlap 163509 163512 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 166 163583 - 163572 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 167 164695 - 164705 + F 74 -6.8 -4.27316 | opp_overlap 164695 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 168 165211 - 165230 + F 100 -11.4 -5.80951 | opp_overlap 165211 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 169 165230 - 165211 - f 100 -9.2 -5.36441 | opp_overlap 165211 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 170 165326 - 165342 + F 73 -3.8 -5.02201 | TCGCTTTCTCTTTCC TCATTA TAATT TAATGA TTTTTATAATATTTT YpsIP31758_0147 166195 - 167151 + | putative sugar ABC transporter, periplasmic sugar-binding protein TERM 171 167156 - 167180 + F 87 -8.4 -4.4195 | overlap 167159 TTGGTTATTGATTCA GATGGCGGGG CTTGC CCCCGCCTGC TTTTATCACCTGTAT TERM 172 167159 - 167177 + F 95 -13.1 -3.18044 | overlap 167156 GTTATTGATTCAGAT GGCGGGG CTTGC CCCCGCC TGCTTTTATCACCTG YpsIP31758_0148 167237 - 168727 + | putative sugar ABC transporter, periplasmic sugar-binding protein YpsIP31758_0149 168760 - 169758 + | putative sugar ABC transporter, permease protein YpsIP31758_0151 169758 - 170750 + | inner membrane ABC transporter permease protein YjfF YpsIP31758_0150 171618 - 170737 - | transcriptional regulator HdfR TERM 173 171921 - 171907 - g 74 -10 -3.45087 | opp_overlap 171905 171907, overlap 171905 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA TERM 174 171907 - 171921 + G 73 -10 -3.38046 | opp_overlap 171907 171905, overlap 171905 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA YpsIP31758_0152 171737 - 172075 + | hypothetical protein TERM 175 172312 - 172327 + T 100 -11.8 -4.20516 | GTTAGTTGAGTATTA GGGGGC TTTG GCCCCC TTTGTTACATCAGGC YpsIP31758_0153 173855 - 172332 - | Mg chelatase-like protein TERM 176 174363 - 174386 + H 100 -13.8 -5.7946 | opp_overlap 174363 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTTATTGGCAC TERM 177 174386 - 174363 - H 100 -13.8 -3.69069 | opp_overlap 174363 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTTATTGGCAC ilvB3 174479 - 176125 + | acetolactate synthase 2 catalytic subunit ilvM 176122 - 176379 + | acetolactate synthase 2 regulatory subunit TERM 178 176815 - 176801 - g 73 -10 -3.28924 | opp_overlap 176801 176800 TATCTGGGTGCAGAA GCCTTG GAG CAAGGC ATTGATGCTATGGTG ilvE 176402 - 177328 + | branched-chain amino acid aminotransferase ilvD 177533 - 179383 + | dihydroxy-acid dehydratase TERM 179 179412 - 179433 + G 71 -10.1 -2.87344 | TTCGCAACCCTTATC TGCTGCCCC CTGC GGGGCAGAA TATCTGCGGGCGATA ilvA 179389 - 180933 + | threonine dehydratase YpsIP31758_0159 181525 - 181064 - | putative entero membrane protein YpsIP31758_0160 182069 - 181605 - | putative entero membrane protein TERM 180 181899 - 181923 + g 88 -11.6 -3.91897 | TAGCCACCAGTTTAT TTTCCCTTTC TCAGT GAAAGGGAAA TTTCTCACTAAAACA YpsIP31758_0161 182931 - 182053 - | hypothetical protein TERM 181 182785 - 182798 + g 75 -5.3 -4.74453 | GCTTGAAATATTATG CAGAT TAAA ATCTG TTTTTAACTGTGTTG ilvY 184149 - 183268 - | DNA-binding transcriptional regulator IlvY TERM 182 183312 - 183298 - G 82 -11.4 -3.41982 | opp_overlap 183298, overlap 183286 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 183 183298 - 183312 + g 100 -11.4 -5.08824 | opp_overlap 183298 183286 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 184 184041 - 184009 - G 81 -7.6 -4.58395 | GTTATCGCGTAAAAA CAGGGGCTGGCCGA TAGTC TCTTCCAGCCGCTG GATCTGGCGGGAAAG TERM 185 184201 - 184226 + H 72 -9.9 -2.87529 | gap 1, opp_overlap 184199, overlap 184200 TGCATAAGAAATCGG GTG-TATTGCAG AAA CTGCAATATCAC ATTGTTAATATATCA ilvC 184435 - 185913 + | ketol-acid reductoisomerase TERM 186 185945 - 185966 + F 100 -9.4 -5.36441 | GTGATTTTATATTGA GCCTCCCT GTAAAA AGGGGGGC TTTTTTATGTGCACC TERM 187 186028 - 186016 - f 75 -9.1 -3.58533 | GTAGAATTGCCGAAA CCCCA GGG TGGGG TAAGAATATTAGGTA TERM 188 187745 - 187733 - g 74 -4.1 -4.946 | opp_overlap 187733 AGGAAATATTAAAAA TGGTA AAG CACCA TCTCCTAAAGAACGT YpsIP31758_0164 186093 - 187898 + | colicin/pyocin immunity family protein YpsIP31758_0165 187900 - 188154 + | colicin/pyocin immunity family protein TERM 189 188174 - 188187 + T 78 -5.9 -4.81163 | opp_overlap 188169 188174, overlap 188169 AATATATAATCCAAA CCGCC TTCT GGTGG TTTTGTTAATATTTA TERM 190 188570 - 188591 + T 72 -9.5 -3.14564 | ATGCTGCCCGCAGGG TGAGTCTCA GGGG TGAGGCTCA TTAATCCCCAGGTGC YpsIP31758_0166 188765 - 188607 - | hypothetical protein YpsIP31758_0167 189523 - 188789 - | pili assembly chaperone YpsIP31758_0168 190850 - 189573 - | hypothetical protein TERM 191 189619 - 189637 + g 72 -5.9 -4.33004 | GCATTCACTGCTCCG GCGGTCA CCGTT TGCCCGC TTATTTTGCTTAACT TERM 192 190192 - 190211 + g 79 -10.7 -3.54129 | TCAGTACCCTCAATC GGGCCAG TAATTC CTGGCCC TTTAAACGCGATATA YpsIP31758_0169 193608 - 190957 - | fimbrial usher protein TERM 193 192590 - 192578 - G 71 -6.3 -4.15044 | opp_overlap 192588, overlap 192588 CTGGTGCTGAACAAA TCGTT AAT AACGA ACGGGCCAGGAGCGA YpsIP31758_0170 194367 - 193636 - | pili assembly chaperone TERM 194 194419 - 194391 - R 86 -12.5 -2.52676 | opp_overlap 194388 194383 TACCTTCTGAAGTCA TTTACCGAGTGGT TAT ACCACCCGGTAAT AAATACATTTATTAC YpsIP31758_0171 194961 - 194431 - | fimbrial protein TERM 195 195042 - 194988 - R 82 -10.2 -3.71794 | opp_overlap 194997, overlap 194997 ATGTAATCATTGAAA TGGAGTTAATTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAATTTGATTGA GTGAATATATATTCC TERM 196 194997 - 195033 + r 100 -24.1 -3.93556 | opp_overlap 194997 194988 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 197 195033 - 194997 - R 100 -24.1 -3.11732 | opp_overlap 194997, overlap 194988 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 198 195083 - 195118 + r 100 -6.4 -6.06529 | gap 1, opp_overlap 195092, overlap 195084 GTTTTTATTATTCGT C-TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGATG TTTTTTTTCTGTGTA TERM 199 195084 - 195116 + r 100 -10.1 -4.65669 | opp_overlap 195092, overlap 195083 TTTTTATTATTCGTC TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGA TGTTTTTTTTCTGTG YpsIP31758_0172 196544 - 195753 - | glutamine cyclotransferase TERM 200 196741 - 196782 + r 71 -9.6 -3.06796 | gap 1, opp_overlap 196742 196744 196749, overlap 196749 GTATGACGAGTATAA ACATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGGA TTAGCTGCGGTACAA TERM 201 196781 - 196742 - R 100 -13.1 -4.00038 | gap 1, opp_overlap 196741 196749, overlap 196744 196749 TATGACGAGTATAAA CATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGG ATTAGCTGCGGTACA TERM 202 196779 - 196744 - R 100 -14.3 -3.58864 | gap 1, opp_overlap 196741 196749, overlap 196742 196749 TGACGAGTATAAACA TGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCA GGATTAGCTGCGGTA TERM 203 196749 - 196774 + r 73 -8.4 -3.61268 | gap 1, opp_overlap 196744 196742 196749, overlap 196741 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG TERM 204 196774 - 196749 - R 77 -8.4 -4.05181 | gap 1, opp_overlap 196749 196741, overlap 196744 196742 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG ppiC 197064 - 196783 - | peptidyl-prolyl cis-trans isomerase C YpsIP31758_0174 197230 - 197084 - | hypothetical protein TERM 205 198156 - 198171 + G 77 -2.6 -5.26316 | opp_overlap 198167 GCCAACAACCCACAT GTTTTT GAAA AGAAAC TTTTTTCTGAACTGA TERM 206 199134 - 199150 + G 78 -7.9 -4.47328 | TACGGCGAGTTGATT CGGCCAG AAC CTAGCCG TTTTCTGATGGAGTT TERM 207 199250 - 199233 - g 100 -11.3 -4.66609 | opp_overlap 199232 199231 GAGCGTATGCAAAAA GGCCAGA GTCA TCTGGCC AATCTTCGTGCTCAG rep 197268 - 199289 + | ATP-dependent DNA helicase Rep YpsIP31758_0176 199454 - 199290 - | hypothetical protein TERM 208 199369 - 199346 - G 81 -11.1 -3.69702 | overlap 199349 CAGTAGTGAAGATAA TAACGGGCA GTCTAT TGCCCGTTA GCCATGCATTAAGGC TERM 209 199366 - 199349 - G 76 -8.4 -3.97511 | overlap 199346 TAGTGAAGATAATAA CGGGCA GTCTAT TGCCCG TTAGCCATGCATTAA gppA 200953 - 199457 - | guanosine pentaphosphate phosphohydrolase rhlB 202243 - 200957 - | ATP-dependent RNA helicase RhlB TERM 210 201495 - 201513 + g 85 -3 -5.59655 | opp_overlap 201497, overlap 201496 201497 CATTCTTCTTCAATT AACGTCTG TAA CAGACGCA TTTTTTCTTCATTTG TERM 211 201511 - 201497 - G 73 -10 -3.33696 | opp_overlap 201497 201496 201495 TTCTTCTTCAATTAA CGTCTG TAA CAGACG CATTTTTTCTTCATT TERM 212 201554 - 201564 + g 76 -2.4 -5.25803 | CAACTCTTCTTTGAT GCGG TGA CCGG TTTTTTGTAACGGTT trx 202362 - 202688 + | thioredoxin TERM 213 203471 - 203493 + G 71 -6.9 -4.28369 | GTTGCCGGTAAGATT CGTCCGCCT AAAGA AGGCGAGCG TTATTTTGCATTGTT TERM 214 203756 - 203774 + G 74 -6.8 -4.35461 | overlap 203758 GCGACCAGCATTGCT TACAATCA CCC TGATTGTG TTTTGATGGTATTGC rho 203168 - 204427 + | transcription termination factor Rho TERM 215 204597 - 204579 - f 100 -11.7 -4.23892 | opp_overlap 204579 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTGTGCC TERM 216 204579 - 204597 + F 100 -11.7 -5.32944 | opp_overlap 204579 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTGTGCC TERM 217 204620 - 204638 + F 100 -16 -3.07307 | opp_overlap 204620 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 218 204638 - 204620 - f 100 -16 -4.36914 | opp_overlap 204620 CTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_0181 204700 - 205209 + | IS1541, transposase TERM 219 205283 - 205315 + F 100 -11.3 -4.64766 | opp_overlap 205290, overlap 205287 205289 205290 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTGGAATATACG TERM 220 205287 - 205311 + F 100 -9.9 -4.87389 | opp_overlap 205290, overlap 205283 205289 205290 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTTGGAATA TERM 221 205289 - 205309 + F 100 -12.5 -4.04587 | opp_overlap 205290, overlap 205287 205283 205290 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTGGAA TERM 222 205308 - 205290 - f 100 -16 -4.8048 | opp_overlap 205290 205289 205287 205283 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTGGA TERM 223 205290 - 205308 + F 100 -16 -3.01668 | opp_overlap 205290, overlap 205289 205287 205283 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTGGA wecA 205688 - 206770 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YpsIP31758_0183 206788 - 207867 + | lipopolysaccharide biosynthesis protein WzzE YpsIP31758_0184 208148 - 209278 + | UDP-N-acetylglucosamine 2-epimerase TERM 224 209322 - 209336 + G 76 -7 -4.42238 | overlap 209320 TGGGTATATTGGTCT GCCGAC CGC GGCGGC TTTTGCTTCGCGTAA YpsIP31758_0185 209275 - 210537 + | UDP-N-acetyl-D-mannosamine dehydrogenase rfbB 210534 - 211601 + | dTDP-glucose 4,6-dehydratase TERM 225 211757 - 211714 - f 91 -11.8 -3.57144 | opp_overlap 211715, overlap 211715 211718 TCCTGCACCTTGAAA TCTATAGTGTCTATCGTTGG GTGA CCTACGATAGACACCAAAGT CGATGAATCATCGGG TERM 226 211756 - 211715 - f 100 -15.3 -2.74144 | opp_overlap 211715, overlap 211714 211718 CCTGCACCTTGAAAT CTATAGTGTCTATCGTTGG GTGA CCTACGATAGACACCAAAG TCGATGAATCATCGG TERM 227 211753 - 211718 - f 100 -15.6 -2.64803 | opp_overlap 211715, overlap 211715 211714 GCACCTTGAAATCTA TAGTGTCTATCGTTGG GTGA CCTACGATAGACACCA AAGTCGATGAATCAT TERM 228 212277 - 212259 - g 70 -8 -3.93061 | opp_overlap 212266 212268 212268 AGTCCAAAACTGAAA GCCGTCGC CGC GCGTCAGC AGGGCGCGACTGTTT rfbA 211896 - 212777 + | glucose-1-phosphate thymidylyltransferase wecD 212755 - 213492 + | TDP-fucosamine acetyltransferase YpsIP31758_0189 213494 - 214624 + | TDP-4-oxo-6-deoxy-D-glucose transaminase TERM 229 214658 - 214691 + G 85 -12.5 -3.27774 | overlap 214660 ATCGATTTGGACTGC CTGCTCTACGCTAAT CAAG ATTGGCGTAGGGCTG TTGGTGGTTAAACTG TERM 230 214660 - 214689 + G 88 -13.7 -3.20227 | overlap 214658 CGATTTGGACTGCCT GCTCTACGCTAAT CAAG ATTGGCGTAGGGC TGTTGGTGGTTAAAC YpsIP31758_0190 214626 - 215882 + | polysaccharide biosynthesis protein TERM 231 216121 - 216146 + G 80 -7.5 -4.64861 | gap 1, overlap 216132 GAGGCGGTTATTGCC CGTGCACAGGCG GAT CGCA-GTGCGCG TTTCTTTTGGCACGG wecF 215905 - 216990 + | 4-alpha-L-fucosyltransferase YpsIP31758_0192 216987 - 218351 + | putative enterobacterial common antigen polymerase TERM 232 219053 - 219067 + G 76 -7.2 -4.4078 | overlap 219049 CGCATTCGTCGTCAG CTTAAG CTG CTTAAG TTTGTTGGTTATTAT YpsIP31758_0193 218360 - 219100 + | putative UDP-N-acetyl-D-mannosaminuronic acid transferase TERM 233 220210 - 220222 + G 90 -10.5 -4.41348 | GCTTCGATAACCTGA CCGCC CAT GGCGG TTTCTTTGCCGGGGG YpsIP31758_0194 219639 - 221030 + | putative transport protein YifK TERM 234 221551 - 221524 - T 73 -7.2 -4.08706 | TTCGCACCACACAAA CATGTAGATATT TATT AATATTTACATG GACATAGGTCGAGAG TERM 235 221697 - 221683 - T 100 -12.8 -4.33248 | opp_overlap 221683 CAATTTCAGAAGAAA CCCCGC AAT GCGGGG TTTTTTTTCGCCTGA TERM 236 221683 - 221697 + T 100 -12.8 -5.78622 | opp_overlap 221683 CAATTTCAGAAGAAA CCCCGC AAT GCGGGG TTTTTTTTCGCCTGA TERM 237 222420 - 222441 + T 100 -10.2 -6.11644 | opp_overlap 222422 CCTGAAAATTTTAGA CACTTGCC CTTTTC GGCAAGTG TTTTTTTTTGGGTGC hemY 223753 - 222533 - | putative protoheme IX biogenesis protein YpsIP31758_0196 224880 - 223756 - | putative uroporphyrinogen III C-methyltransferase TERM 238 224128 - 224138 + g 71 -6.8 -4.28762 | opp_overlap 224128 GAAATCAGACATAAA GCTG TGC CAGC TTTTGCTCAGATTCT TERM 239 224138 - 224128 - G 71 -6.8 -4.19024 | opp_overlap 224128 GAAATCAGACATAAA GCTG TGC CAGC TTTTGCTCAGATTCT hemD 225660 - 224911 - | uroporphyrinogen-III synthase TERM 240 225144 - 225126 - G 78 -11 -3.43203 | CCACCAGAATATCAA CACCGGCA CGT TGCCAGTG AGCACTTTGTTCGCT hemC 226598 - 225657 - | porphobilinogen deaminase YpsIP31758_0199 226601 - 226714 + | hypothetical protein TERM 241 226726 - 226700 - T 78 -2.3 -5.4477 | overlap 226705 226716 AAATGCCTAAAAAAA CAACTGTTGCA ATGAA TACAACGATTG TAATGGATGCATGAC YpsIP31758_0200 227028 - 226819 - | hypothetical protein cyaA 227092 - 229644 + | adenylate cyclase TERM 242 229689 - 229661 - T 86 -12 -3.23452 | opp_overlap 229661 229663, overlap 229656 ATGCTGACAAGCGAA TAGCCAATAAAA ACAGG TTTTATTGGCTA TCTCTAATAAGAAAG TERM 243 229661 - 229689 + T 86 -12 -2.94099 | opp_overlap 229661 229656, overlap 229663 ATGCTGACAAGCGAA TAGCCAATAAAA ACAGG TTTTATTGGCTA TCTCTAATAAGAAAG TERM 244 229663 - 229687 + T 76 -10.2 -3.02471 | opp_overlap 229661 229656, overlap 229661 GCTGACAAGCGAATA GCCAATAAAA ACAGG TTTTATTGGC TATCTCTAATAAGAA YpsIP31758_0202 231243 - 229735 - | hypothetical protein TERM 245 230717 - 230729 + g 73 -4.9 -4.77778 | ACATCAAGTACTTCT TTGAA TTT TTCAA TTTTATCTATTTCTT TERM 246 231391 - 231426 + r 100 -10.6 -4.2828 | gap 1, opp_overlap 231396 231402, overlap 231398 TTTAGCGTGTTCCAA TTG-AATACCAACCGAG TTG CTCGGCTGGTATTGCGA TTTTACTCACTGAAA TERM 247 231420 - 231396 - R 100 -15.1 -3.17075 | opp_overlap 231391 231398, overlap 231402 CGTGTTCCAATTGAA TACCAACCGAG TTG CTCGGCTGGTA TTGCGATTTTACTCA TERM 248 231398 - 231418 + r 79 -11.1 -3.15768 | opp_overlap 231396 231402, overlap 231391 TGTTCCAATTGAATA CCAACCGAG TTG CTCGGCTGG TATTGCGATTTTACT TERM 249 231414 - 231402 - R 71 -9.1 -3.39529 | opp_overlap 231398 231391, overlap 231396 CCAATTGAATACCAA CCGAG TTG CTCGG CTGGTATTGCGATTT YpsIP31758_0203 231752 - 231429 - | frataxin-like protein YpsIP31758_0204 231904 - 232104 + | putative lipoprotein TERM 250 232712 - 232740 + G 75 -11.7 -2.64616 | overlap 232711 AACCTATATTTTACG CGCCGCAGAGCAT ACG GTGCTGTGTGGCG TGGTGTCGATGGGCA dapF 232287 - 233111 + | diaminopimelate epimerase YpsIP31758_0206 233176 - 233880 + | hypothetical protein xerC 233877 - 234788 + | site-specific tyrosine recombinase XerC TERM 251 234872 - 234897 + G 77 -4 -5.0133 | gap 1, overlap 234872 234873 234875 AATCGGCCAGTGATC G-CGCGGACTG AACAG CAGTCTGTGGC TTTTTTACAACAGTA YpsIP31758_0208 234788 - 235504 + | flavin mononucleotide phosphatase TERM 252 235564 - 235553 - f 72 -7.2 -3.91716 | opp_overlap 235552 GGAGGGGGCAAACAA CCGG AGAC CCGG CATTGTGGCTATTTT TERM 253 235670 - 235642 - g 74 -4.3 -4.86621 | opp_overlap 235654, overlap 235645 235647 AGCCTGAATGAAAAA CAACGTGACGCCG TGG CCGCGCCGCGCGG CAACTTGTTGGTACT TERM 254 235667 - 235645 - g 77 -6.8 -4.53777 | opp_overlap 235654, overlap 235642 235647 CTGAATGAAAAACAA CGTGACGCCG TGG CCGCGCCGCG CGGCAACTTGTTGGT TERM 255 235654 - 235674 + G 88 -12.5 -3.75024 | opp_overlap 235645 235642 235647 AAACAACGTGACGCC GTGGCCGCG CCG CGCGGCAAC TTGTTGGTACTGGCC TERM 256 236069 - 236059 - g 71 -8.2 -3.66995 | GGCAAAAAAGACGAA GGGC TGC GCCC ACAACATATTGAGAG uvrD 235603 - 237765 + | DNA-dependent helicase II TERM 257 237778 - 237804 + T 76 -9.4 -3.40971 | overlap 237777 TAATCTGATATTTGT GGTGGTTGCAGT GTC AGTGCGGCCACC TATCTATTTTTATTT YpsIP31758_0210 238544 - 237879 - | TetR family transcriptional regulator TERM 258 239211 - 239222 + G 72 -5.8 -4.46212 | TAATGCTATGGCTAT CGCT TTCG AGCG TTTTATGGTGAGCCG YpsIP31758_0211 238972 - 240204 + | hypothetical protein YpsIP31758_0212 240230 - 241060 + | hypothetical protein TERM 259 241144 - 241165 + T 100 -7.3 -5.85178 | opp_overlap 241144 GCAGGGTACGCAAAA CCGAAGTTG TTAC TGACTTCGG TTTTTTTTGGGTCTT YpsIP31758_0213 241393 - 241259 - | hypothetical protein TERM 260 241885 - 241899 + G 81 -3.5 -5.42259 | gap 1, overlap 241847 AGAGTTGGACGATAT CGAGGC TTCG GCC-CG TTTTTTTGAAGATGA corA 241709 - 242659 + | magnesium/nickel/cobalt transporter CorA TERM 261 242698 - 242742 + T 100 -8.8 -5.42862 | gap 2, opp_overlap 242698 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGG ACTAACC CCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT TERM 262 242742 - 242698 - T 100 -11.7 -5.5604 | gap 2, opp_overlap 242698 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGGA CTAAC CCCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT rarD 243647 - 242757 - | RarD protein TERM 263 243421 - 243407 - G 83 -9.2 -4.41494 | overlap 243408 TACTGGCAATCAAAA CGGCGG TCA CCGCCA GTAATAATAGGCGCT TERM 264 243420 - 243408 - G 73 -10.5 -3.24414 | overlap 243407 ACTGGCAATCAAAAC GGCGG TCA CCGCC AGTAATAATAGGCGC YpsIP31758_0216 244204 - 243734 - | hypothetical protein YpsIP31758_0217 244426 - 245304 + | phospholipase A TERM 265 245328 - 245360 + F 95 -14.2 -2.86164 | gap 1, opp_overlap 245335 245337 GGCGTTATCACAGTT TCAGACACAGGCCGG TTAG CCGGCCTGTG-CAGA TCTAATAGTTGGGGA TERM 266 245354 - 245335 - f 100 -15 -2.89191 | opp_overlap 245328, overlap 245337 TCACAGTTTCAGACA CAGGCCGG TTAG CCGGCCTG TGCAGATCTAATAGT TERM 267 245352 - 245337 - f 86 -11.8 -2.99649 | opp_overlap 245328, overlap 245335 ACAGTTTCAGACACA GGCCGG TTAG CCGGCC TGTGCAGATCTAATA recQ 245381 - 247213 + | ATP-dependent DNA helicase RecQ rhtC 247320 - 247940 + | threonine efflux system TERM 268 247936 - 247986 + T 77 -11.1 -2.79007 | opp_overlap 247953, overlap 247936 247975 AACTGATATTGTCCC GCTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGG CTCTTTATACTTTGC TERM 269 247936 - 247987 + T 84 -10.9 -3.66216 | gap 1, opp_overlap 247953, overlap 247936 247975 AACTGATATTGTCCC G-CTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGGC TCTTTATACTTTGCG rhtB 248611 - 247991 - | homoserine/homoserine lactone efflux protein TERM 270 249810 - 249823 + G 73 -5.2 -4.56775 | overlap 249801 GTGCCGAGGCGCTTA GCGC CATATT GCGC TTTTTCGCGCAACAT pldB 248864 - 249859 + | lysophospholipase L2 YpsIP31758_0222 249894 - 250703 + | putative sugar phosphatase TERM 271 250741 - 250759 + F 100 -12.4 -4.06562 | TGATGCTGTGGAGTA GGGTGGCC TTT GGTCACCC TTTCTCCTTGGCGTT TERM 272 250873 - 250883 + F 71 -6.8 -4.09818 | CACGTCAATGACTTT GGGT TAT ACCC TTTCTCCTTGGTGTT YpsIP31758_0223 251078 - 252313 + | hypothetical protein glpQ 253502 - 252387 - | glycerophosphodiester phosphodiesterase TERM 273 253672 - 253641 - R 79 -10.8 -3.15699 | overlap 253639 ATGTAGGGATGAAGA GGGCTGTGACGCCA TGAA TAGCGGCACAGCCT AACTACCTGGTGCTA glpT 255041 - 253689 - | sn-glycerol-3-phosphate transporter TERM 274 253901 - 253875 - G 71 -8.6 -3.76837 | opp_overlap 253875 253873 253888 CAGATAACCGAACAA GCCAGTAAAGCC TGC GGCGGTACCGGC TGCTTTCTTCGGTGC TERM 275 255049 - 255059 + rH 71 -2.4 -5.22104 | CTCAACATGTTATGC CTCC GAT GGCG TTTTATTGTTTTTTG YpsIP31758_0226 255423 - 255265 - | hypothetical protein glpA 255422 - 257077 + | sn-glycerol-3-phosphate dehydrogenase subunit A glpB 257067 - 258341 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpC 258386 - 259633 + | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 276 259784 - 259760 - T 100 -17.2 -4.72631 | opp_overlap 259764 259781 AGTAAGTTAATAAAA CAGAGCGCGG GTGAA CCGCGCTCTG CTGGGACAGATTATT TERM 277 259764 - 259780 + T 77 -10.8 -2.78463 | opp_overlap 259760 AGTTAATAAAACAGA GCGCGG GTGAA CCGCGC TCTGCTGGGACAGAT YpsIP31758_0230 260322 - 259795 - | hypothetical protein YpsIP31758_0231 261120 - 260452 - | hypothetical protein tusA 261381 - 261635 + | cell developmental protein SirA cadA 264050 - 261684 - | zinc/cadmium/mercury/lead-transporting ATPase YpsIP31758_0234 265090 - 264464 - | hypothetical protein YpsIP31758_0235 265380 - 265700 + | hypothetical protein TERM 278 266005 - 265993 - g 79 -3.3 -5.252 | TATTGGCAGAAAAAA CAGCA GGA TGCAG AAAATGATCGCGCAC YpsIP31758_0236 265912 - 266331 + | hypothetical protein YpsIP31758_0237 266790 - 266518 - | hypothetical protein TERM 279 266760 - 266749 - G 76 -2.2 -5.32882 | overlap 266750 266752 CAGCAGTATAAAAAA CCAG ACGC CTAG CATCAGTAACCGGCC YpsIP31758_0238 267442 - 266780 - | 16S rRNA m(2)G966-methyltransferase TERM 280 267755 - 267733 - g 71 -6.4 -4.24002 | TCGCAAATGGCAAAA GAAAAAAAAC GTG GATTTTTTTC CTGGCTGGGTCTTGG TERM 281 267805 - 267787 - g 88 -12.4 -3.70773 | overlap 267798 CGTCAGAGTGAAGAA CCAGCAGC AGA GCCGCTGG CGACTGAAAAAGAAG TERM 282 269094 - 269074 - g 77 -3.1 -5.26875 | opp_overlap 269088, overlap 269075 CGGGTAATGAAAAAA CTGGACGGC GAC GCCCCCCAT GAGGTTATGCTGACA ftsY 267724 - 269349 + | cell division protein FtsY ftsE 269355 - 270023 + | cell division protein FtsE YpsIP31758_0241 270013 - 270966 + | cell division protein FtsX TERM 283 271715 - 271701 - g 73 -7.8 -4.09739 | opp_overlap 271706, overlap 271706 TCAACCTGCGTAAAA CCAAGC AGC GCCTGG GCTGGTTTAATCAGG rpoH 271277 - 272134 + | RNA polymerase factor sigma-32 TERM 284 272194 - 272174 - T 93 -11.2 -4.11183 | opp_overlap 272174 CGGCATGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTTTTTGGTA TERM 285 272174 - 272194 + T 100 -11.2 -4.80167 | opp_overlap 272174 CGGCATGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTTTTTGGTA YpsIP31758_0243 272729 - 272337 - | acetyltransferase TERM 286 272631 - 272609 - G 73 -4.8 -4.73388 | AACGTGCAGCAAAAA GCGGTTTACC CTC AGTAATCCAC TGTTGCCAGACAACA TERM 287 273519 - 273500 - g 85 -12.2 -3.39717 | ATTTATGAAGATGAA GGGGTGAT AATG ATCACCCC TGCTGCTACAAACGC TERM 288 274157 - 274146 - g 73 -7.2 -4.17023 | overlap 274154 274155 CTAACGATCTGAAAA CCGG CAAA CCGG TTGAGACCGTGATGG livK 273152 - 274267 + | high-affinity branched-chain amino acid ABC transporter, periplasmic leucine-specific-binding protein TERM 289 274357 - 274377 + F 100 -10.4 -4.70659 | CTTCTATCAACTGCA TCCCCTCG TATTC CGGGGGGA TTTTTCCCTCTACAG livH 274448 - 275374 + | branched-chain amino acid transporter permease subunit LivH TERM 290 276327 - 276306 - g 71 -8.7 -3.71672 | CCCGACCAAAATTAA GCTGACGGC ATTT ACCATCAGC GCGGCCTTTGCGGGT livM 275371 - 276657 + | leucine/isoleucine/valine transporter permease subunit livG 276654 - 277421 + | leucine/isoleucine/valine transporter ATP-binding subunit livF 277466 - 278167 + | leucine/isoleucine/valine transporter ATP-binding subunit YpsIP31758_0249 278395 - 278856 + | hypothetical protein YpsIP31758_0250 280077 - 278971 - | hypothetical protein YpsIP31758_0251 280736 - 280218 - | hypothetical protein TERM 291 280275 - 280289 + g 78 -9.2 -4.13728 | TTTCCCCGCAGTATT GTCCCC CGC GGGGGC TTTTGCGGATATCTG YpsIP31758_0252 281445 - 280798 - | hypothetical protein YpsIP31758_0253 282103 - 281417 - | hypothetical protein TERM 292 281794 - 281816 + gr 73 -5.6 -4.52857 | GTACCGGCGATTTGA GTGGGATA AGCGTAA TATCCCGC TTTTGTCTCGGCCCT TERM 293 281950 - 281964 + gr 72 -9.2 -3.22951 | opp_overlap 281950, overlap 281948 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGTA TERM 294 281964 - 281950 - GR 71 -7 -4.07868 | opp_overlap 281950 281948 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGTA YpsIP31758_0254 284436 - 282121 - | hypothetical protein TERM 295 284665 - 284637 - R 79 -11.2 -2.92642 | gap 1, opp_overlap 284637, overlap 284639 284641 AGTATGACGGATATA TACAGCCA-GGAA ATAA TTCCATGGCTGTA TTCATTAAATTAACA TERM 296 284637 - 284665 + r 81 -11.2 -3.4052 | gap 1, opp_overlap 284637 284639 284641 AGTATGACGGATATA TACAGCCA-GGAA ATAA TTCCATGGCTGTA TTCATTAAATTAACA TERM 297 284663 - 284639 - R 71 -9.4 -3.01416 | gap 1, opp_overlap 284637, overlap 284637 284641 TATGACGGATATATA CAGCCA-GGAA ATAA TTCCATGGCTG TATTCATTAAATTAA YpsIP31758_0255 285227 - 284703 - | hypothetical protein TERM 298 285563 - 285532 - H 79 -3.2 -5.26875 | opp_overlap 285532 TTGGTAATGAAAAAA TAAAATGGAATTAA AAGG TTACTTTCATTTTA TTGTTAATTTTTTGT TERM 299 286495 - 286484 - g 89 -3.6 -5.5353 | GATATGAATAAAAAA GGCG ATTT CACC TATTTTGGCCGTAAA ugpB 285749 - 287068 + | glycerol-3-phosphate transporter periplasmic binding protein ugpA 287366 - 288253 + | glycerol-3-phosphate transporter permease TERM 300 288478 - 288488 + G 75 -5.4 -4.81863 | CCTTTCGGGTTGATG CTGT TGA ACAG TTTTGTTATGGCTTT TERM 301 289027 - 289042 + G 71 -6.8 -4.25256 | ATTTTGACTTTAATT CCACCG GTCG TGGTGG TTCTTTTGATGCAGC ugpE 288250 - 289095 + | glycerol-3-phosphate transporter membrane protein TERM 302 289758 - 289732 - g 75 -7.9 -4.2461 | opp_overlap 289755 ATTGTGATGAACAAA GGGGTTGCCGA GCAAA TCGGTACCCCC AGCGAGGTTTATAAA TERM 303 290094 - 290084 - g 71 -6.8 -4.25056 | opp_overlap 290083, overlap 290085 TATCCCATGAAGAAA TGCC AGT GGCA GGCAGTACATTGCAT ugpC 289102 - 290175 + | glycerol-3-phosphate transporter ATP-binding subunit ugpQ 290172 - 290921 + | cytoplasmic glycerophosphodiester phosphodiesterase TERM 304 290997 - 290963 - f 85 -5.7 -5.18726 | CCGCCATAATAAAAA CAGGTCAGCCATT CTTACATTT ACGGGCTGACCTG GCCCGGCCTGACAGG YpsIP31758_0261 291022 - 291978 + | transporter, auxin efflux carrier (AEC) family protein TERM 305 292445 - 292457 + GT 73 -3.3 -4.89729 | overlap 292435 GATGCGTGTCGGGCT GGCCG CAC TGGTC TTTTTGCCTTTTCTG metR 294072 - 293119 - | transcriptional regulator MetR YpsIP31758_0263 292332 - 293231 + | carboxylate/amino acid/amine transporter metE 294178 - 296454 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 306 296489 - 296504 + T 100 -11.8 -5.52096 | GTAGTGGGGCTTTTG GGGCGC TTTC GCGCCC TTTTTTATTGCGTTT YpsIP31758_0265 297381 - 296509 - | dienelactone hydrolase family protein TERM 307 296763 - 296748 - G 71 -10.4 -2.88544 | CTTTACCTCCATATA GCCCCA ACAC TGGGGC GCAGAGATCGATAGC TERM 308 296997 - 296985 - G 75 -7.7 -4.29738 | opp_overlap 296984 CGAGATCCACCAAAA CCTGA CGA TCAGG GACTTTTTTTACCAG udp 297808 - 298569 + | uridine phosphorylase TERM 309 298603 - 298622 + F 100 -11.4 -4.36862 | TAGAGGGTTTGTTCT CGGGTCAG TTTA CTGGCCCG TTCTTTATTTCATCT YpsIP31758_0267 298696 - 299565 + | hypothetical protein TERM 310 299967 - 299986 + G 93 -6.4 -5.5112 | overlap 299969 GTATCCTTACGATCT GTTACCGT TTAT ACGGTATC TTTTTTGTTCGTAAG TERM 311 299969 - 299984 + G 78 -7.6 -4.39002 | overlap 299967 ATCCTTACGATCTGT TACCGT TTAT ACGGTA TCTTTTTTGTTCGTA TERM 312 300738 - 300751 + G 75 -8.1 -4.15222 | CTGAAATTCAATTCC CTGCG GTTA CGCAG TTTATTCACGGCGGT TERM 313 301454 - 301470 + G 81 -12.3 -3.0682 | GCCACGATTATCCTG CGCTTGG CGA CCAAGCG TGTGTATATGCTGAC YpsIP31758_0268 299915 - 301726 + | carbon starvation protein CstA TERM 314 301755 - 301782 + F 100 -13.6 -5.5074 | opp_overlap 301759 TTGTGCTAATTTGTT TAAACGGCTGGA ATCT TCTAGCCGTTTA TTTTTTGTTAAGTTA TERM 315 302586 - 302599 + G 73 -2.3 -5.07107 | overlap 302596 TCTTCGAGCGTTGGG GGTTC TTTG GGGCC TTTTTTGGCCGTTTC YpsIP31758_0269 302246 - 302776 + | DedA family protein YpsIP31758_0270 302984 - 304489 + | RmuC domain-containing protein TERM 316 304498 - 304522 + F 72 -7.7 -3.75015 | AGAGTAATTTAATTG GCACCGCAACC AGG GGGTGTGGGGC TTTCATCGGAGTTCT ubiE 304581 - 305336 + | ubiquinone/menaquinone biosynthesis methyltransferase YpsIP31758_0272 305368 - 306000 + | hypothetical protein ubiB 306000 - 307631 + | putative ubiquinone biosynthesis protein UbiB tatA1 307811 - 308077 + | twin arginine-targeting protein translocase TatA tatB 308081 - 308743 + | twin arginine-targeting protein translocase TatB TERM 317 308819 - 308833 + G 83 -6.4 -4.98436 | opp_overlap 308819 308820, overlap 308820 TACTGAATTGTATAA TCACCA TTT TGGTGG TTTTTCTGGTATTGG tatC 308746 - 309522 + | TatABCE protein translocation system subunit TERM 318 309542 - 309559 + F 100 -14.1 -3.95435 | ATGCGTTGATATTTA GCCGCCC TTCT GGGCGGC TTCTGTTTTGGAACA TERM 319 310335 - 310355 + G 79 -10.3 -3.75153 | opp_overlap 310335 310334 310333 AAACTGATGAAAACG CCCGCCGGG TTT TCCGGCTGG TTTGAGTTAGGAGAA tatD 309578 - 310360 + | DNase TatD hemB 310375 - 311397 + | delta-aminolevulinic acid dehydratase TERM 320 311419 - 311457 + T 73 -8.9 -3.56273 | opp_overlap 311423 311431, overlap 311420 311423 ATAACTAAGAGTCAC AGCATTCAGATAGGCAC TAACT GCGCCTATCTGAATGAA TTCTATAATGATGAG TERM 321 311420 - 311456 + T 88 -12.4 -2.73443 | opp_overlap 311423 311431, overlap 311419 311423 TAACTAAGAGTCACA GCATTCAGATAGGCAC TAACT GCGCCTATCTGAATGA ATTCTATAATGATGA TERM 322 311453 - 311423 - T 100 -14.9 -2.66787 | opp_overlap 311420 311419 311423, overlap 311431 CTAAGAGTCACAGCA TTCAGATAGGCAC TAACT GCGCCTATCTGAA TGAATTCTATAATGA TERM 323 311423 - 311453 + T 88 -12.7 -2.64051 | opp_overlap 311423 311431, overlap 311420 311419 CTAAGAGTCACAGCA TTCAGATAGGCAC TAACT GCGCCTATCTGAA TGAATTCTATAATGA rfaH 311995 - 311507 - | transcriptional activator RfaH ubiD 312243 - 313739 + | 3-octaprenyl-4-hydroxybenzoate decarboxylase YpsIP31758_0281 313794 - 314495 + | FMN reductase TERM 324 314524 - 314508 - T 82 -5.7 -4.97402 | overlap 314509 TAAAAGCGATAAAAA GCCCGCC TCT GACCGGC GGGGAAATAGCAACT TERM 325 314527 - 314509 - T 73 -8.8 -3.56814 | overlap 314508 AAAAGCGATAAAAAG CCCGCC TCTGACC GGCGGG GAAATAGCAACTAAA fadA 315801 - 314638 - | 3-ketoacyl-CoA thiolase TERM 326 315758 - 315740 - G 78 -8 -4.33274 | CGTACATGACGAAAA GCCCCCCC TTT GGAGCGGC CCATCGGTGTACGCA fadB 318002 - 315813 - | multifunctional fatty acid oxidation complex subunit alpha TERM 327 316539 - 316552 + g 73 -8.1 -4.05033 | opp_overlap 316538 316535 ATCATTGACAACAAT TGGGG TTTT CCCCA TTTGTGTAGCGTAAG TERM 328 317740 - 317723 - G 77 -8.5 -4.1899 | opp_overlap 317734 317735, overlap 317738 CCAGTCGATTGAAAA TGGTGTT GGCG AACACCA GCCACTGGTGCAGTT TERM 329 318283 - 318257 - H 79 -8 -4.31835 | opp_overlap 318258, overlap 318258 AATTTGTAGAATAAA CGTCATCGAAAC ATG GTTTCGGTGACT ATGATAAGATAAAAA TERM 330 318258 - 318282 + H 93 -13.7 -2.79796 | opp_overlap 318258 318257 ATTTGTAGAATAAAC GTCATCGAAAC ATG GTTTCGGTGAC TATGATAAGATAAAA TERM 331 318282 - 318258 - H 84 -11.5 -3.18378 | opp_overlap 318258, overlap 318257 ATTTGTAGAATAAAC GTCATCGAAAC ATG GTTTCGGTGAC TATGATAAGATAAAA TERM 332 318416 - 318449 + G 74 -2.6 -5.1356 | overlap 318416 318417 CGTCATCAATTAGAT G-CGTTGCTGATTCAC TCTG GTGAATTA-CAGCGGC TTTTTCTTGATGACC pepQ 318329 - 319660 + | proline dipeptidase TERM 333 319804 - 319823 + G 100 -11.4 -4.64676 | opp_overlap 319802 319798 CAACAACATCCAACG GCCCGGCA TCAT TGCTGGGC TTTTGTTGCCGGTCC YpsIP31758_0285 319660 - 320271 + | hypothetical protein TERM 334 320551 - 320570 + G 93 -5 -5.55769 | TTTTGGACGGTGTTG GGTAGTGT CGGG GCATTACC TTTTTTATTCTCAGA TERM 335 320842 - 320831 - g 81 -5.8 -4.95302 | opp_overlap 320831 TGAAAGATAATAAAA TGCG GCCC CGCA TTGCTGAAACGGCTA trkH 320311 - 321762 + | potassium transporter hemG 321784 - 322317 + | protoporphyrinogen oxidase TERM 336 326151 - 326133 - T 82 -10.3 -3.57798 | overlap 326146 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 337 326611 - 326585 - T 70 -9.4 -2.75844 | opp_overlap 326599 326607, overlap 326584 326587 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 338 326658 - 326647 - T 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 339 327770 - 327780 + T 74 -6.8 -4.27316 | opp_overlap 327770 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 340 328280 - 328248 - T 100 -11.4 -4.50627 | gap 1, opp_overlap 328248 328254, overlap 328254 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 341 328248 - 328280 + T 100 -13.6 -4.62783 | gap 1, opp_overlap 328248 328254, overlap 328254 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 342 328273 - 328254 - T 95 -9.2 -4.50993 | opp_overlap 328254 328248, overlap 328248 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG TERM 343 328254 - 328273 + T 100 -11.4 -4.98672 | opp_overlap 328248 328254, overlap 328248 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG TERM 344 328598 - 328577 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YpsIP31758_0291 329780 - 328572 - | IS285, transposase metA 330299 - 331228 + | homoserine O-succinyltransferase TERM 345 331273 - 331293 + T 70 -7.5 -3.8165 | opp_overlap 331272, overlap 331270 ATAGATGCTAATTAT GGCGGCT GAATCGA GGCCGCC TATTATTTTCTTCCC YpsIP31758_0293 331570 - 331427 - | hypothetical protein TERM 346 332259 - 332270 + G 73 -7.2 -4.27843 | opp_overlap 332248, overlap 332256 GCAACTGCTGGCGAA GGGC AGCG GCCC TTATTTCTATTTGCC aceB 331648 - 333246 + | malate synthase aceA 333293 - 334600 + | isocitrate lyase TERM 347 334736 - 334710 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 334719, overlap 334711 334726 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 348 334737 - 334711 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 334719, overlap 334710 334726 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 349 334811 - 334834 + F 74 -6.6 -4.4009 | opp_overlap 334811 334810, overlap 334815 CACTTTGTCAATAAC CTCAGCCTGC TTAT GCAGGCTCCG TTTTGTACGGTAGGG TERM 350 334815 - 334830 + F 75 -10.4 -2.80345 | opp_overlap 334811 334810, overlap 334811 TTGTCAATAACCTCA GCCTGC TTAT GCAGGC TCCGTTTTGTACGGT TERM 351 334942 - 334956 + G 71 -7.1 -4.07568 | TCTGGAGGTCACTGC CGGTG CTCAA CACCG TTTTGAGCAGGCCGA TERM 352 336426 - 336445 + G 74 -2.8 -5.0133 | gap 1 GCCATTTCTTATGCA GTGACCGGA AAG TCAGG-CAC TTTTTTGAGGAGATG aceK 334856 - 336583 + | bifunctional isocitrate dehydrogenase kinase/phosphatase protein iclR 337545 - 336703 - | transcriptional repressor IclR TERM 353 337340 - 337325 - G 73 -4.6 -4.71828 | ACCTGACGAACAAAA CCCTGC TGTT GCATGG TCGTGAGTAAACGGT TERM 354 339698 - 339686 - g 74 -4.1 -4.9218 | GATTTAGCAGAAAAA TACCG TGA CAGTA AAAGTGGCGAGGTCG TERM 355 340501 - 340466 - g 77 -3.9 -5.0133 | opp_overlap 340466 CATGCCCGTAAAAAA CCGCGCACCCCGC CGGTCAGTTT GCAAGCTGCACGG AATAACCCAACGGTG metH 337763 - 341455 + | B12-dependent methionine synthase TERM 356 341486 - 341527 + T 100 -11.7 -4.3739 | gap 1, opp_overlap 341489 341493 341502, overlap 341489 341493 GTGAGAGTGTTGAGC CAACGAAGGGGATAAACCCG TAT CGGG-TTATCCCCTTTGCTA TTTTATGACAACGTC TERM 357 341524 - 341489 - T 100 -15.6 -3.05935 | gap 1, opp_overlap 341486 341489 341493, overlap 341493 341502 AGAGTGTTGAGCCAA CGAAGGGGATAAACCCG TAT CGGG-TTATCCCCTTTG CTATTTTATGACAAC TERM 358 341489 - 341524 + T 100 -17.8 -2.8733 | gap 1, opp_overlap 341489 341493 341502, overlap 341486 341493 AGAGTGTTGAGCCAA CGAAGGGGATAAACCCG TAT CGGG-TTATCCCCTTTG CTATTTTATGACAAC TERM 359 341520 - 341493 - T 100 -15 -3.37344 | gap 1, opp_overlap 341489 341486 341493, overlap 341489 341502 TGTTGAGCCAACGAA GGGGATAAACCCG TAT CGGG-TTATCCCC TTTGCTATTTTATGA TERM 360 341493 - 341520 + T 100 -15 -4.10958 | gap 1, opp_overlap 341493 341489 341502, overlap 341489 341486 TGTTGAGCCAACGAA GGGGATAAACCCG TAT CGGG-TTATCCCC TTTGCTATTTTATGA TERM 361 341512 - 341502 - T 77 -8.2 -3.93638 | opp_overlap 341493 341489 341486, overlap 341493 341489 AACGAAGGGGATAAA CCCG TAT CGGG TTATCCCCTTTGCTA shlA 346408 - 341552 - | hemolysin TERM 362 342055 - 342068 + g 75 -8.1 -4.23781 | TATAGCTGGTGGTCT GGACG CTAT CGTCC TTTGATTTTCCTAAG TERM 363 343557 - 343569 + g 75 -3.3 -5.10208 | CCAGACGCATTGATC GTGGT ATC GCCGC TTTTTATTGACGTTA YpsIP31758_0300 348166 - 346478 - | hemolysin activator protein TERM 364 347995 - 348014 + g 74 -4.2 -4.90381 | GTCCGGTGTTGCGTT GCGTTATC TGTT GGTGGCGC TTTTCTTCTATTAAC TERM 365 348487 - 348505 + r 74 -4.5 -4.89393 | opp_overlap 348487, overlap 348497 348498 GGTGTTAGCAGTGAA TGCCCGA TGATC TCAGGCA TTTTTCTGAGGTTTA YpsIP31758_0301 349996 - 348611 - | aspartate kinase III TERM 366 350651 - 350632 - g 85 -11.4 -3.75115 | opp_overlap 350630 350632 350647, overlap 350628 TGGTGAGAAAATTAA CCGCACAG AAGA CCGTGCGG TATTGCATATTGCTC pgi 350366 - 352012 + | glucose-6-phosphate isomerase TERM 367 352044 - 352066 + F 100 -10.6 -5.86332 | overlap 352035 ATCTGTGCTTTATTA GGCCTCTTAT TCT GTAAGGGGCC TTTTTTTTGGCTTGA TERM 368 352215 - 352229 + G 83 -4.2 -5.52384 | overlap 352227 GATTGATTATGTTGG CCGCTA TTT TGGTGG TTTTTTTGGTGAAGG psiE 352139 - 352546 + | phosphate-starvation-inducible protein PsiE TERM 369 352611 - 352591 - T 100 -9.6 -5.24799 | overlap 352592 TGATAAACATAAAAA TGGCGGCC ATTAA GGCCGCCC TAAAGACACAGTACC TERM 370 352610 - 352592 - T 100 -13.1 -3.73253 | overlap 352591 GATAAACATAAAAAT GGCGGCC ATTAA GGCCGCC CTAAAGACACAGTAC malG 353579 - 352689 - | maltose transporter permease malF 355170 - 353593 - | maltose transporter membrane protein TERM 371 355113 - 355127 + g 79 -2.1 -5.42198 | gap 1, overlap 355115 ATTTAAGCGCATCAC TCTGCC ACCA GGC-GA TTTTCTTTTTTCGGC TERM 372 355263 - 355300 + r 74 -9.3 -3.31799 | gap 1, overlap 355249 355272 TGTTTAACGTTGGGT CGTG-TTTAACGTTGAGC TGT GCTTAACGTTGGATCGCG TTATGGCAAATTCTG TERM 373 355272 - 355290 + r 72 -9.6 -3.08471 | overlap 355249 355263 TTGGGTCGTGTTTAA CGTTGAGC TGT GCTTAACG TTGGATCGCGTTATG TERM 374 355318 - 355339 + r 95 -11.5 -3.87815 | ATGGCAAATTCTGTT GAGGCACGG CGAA CCGTGCCCC TTTCTCAGAGTAGAC malE2 356568 - 355357 - | maltose ABC transporter periplasmic protein TERM 375 356311 - 356273 - G 73 -7.5 -4.29738 | gap 1, opp_overlap 356306 GCATAGCCACCAAAA CGGTCATGGGCCCAGA AGATAATG TCCGGGCC-ATCACCG GTTGCGGCGACTTGT YpsIP31758_0307 357350 - 357135 - | hypothetical protein TERM 376 357624 - 357604 - g 72 -11.1 -2.64466 | opp_overlap 357599, overlap 357603 AACGCATGAATGAAG TGCCGCCCT CTG AGCGCGGCA TTGGCATGGTGTTTC malK2 357396 - 358505 + | maltose/maltodextrin transporter ATP-binding protein lamB 358576 - 359847 + | maltoporin TERM 377 359859 - 359878 + F 80 -11.4 -2.66969 | overlap 359856 359856 GTAACAGCGATTCTT CAGCCGTC TGCG GGCGGCTG TACGTTATCTTGATG TERM 378 360276 - 360290 + G 83 -11.4 -3.52906 | opp_overlap 360275, overlap 360273 AGATATTCAACTTAC TGCGGG CAG CCCGCA TATTTCTCAGGGTGA TERM 379 360316 - 360326 + G 77 -8.2 -4.28774 | GGTGAGGTTGAAGGC GCGG TAG CCGC TTTTGCCTTGCCTGC TERM 380 360505 - 360478 - g 73 -4.9 -4.7497 | gap 1, overlap 360498 TTCACCTATGAAAAA GCGGGC-ATCAT GATCA ATGATCGCCTGC AAGGCGTGATGAAAT malM 360088 - 360999 + | maltose regulon periplasmic protein TERM 381 361032 - 361049 + T 100 -12.7 -5.41359 | TATGGCTGGATGGTT GGTGCGC CTTG GCGCACC TTTTTTCGTTTGGTT YpsIP31758_0311 361849 - 361733 - | hypothetical protein TERM 382 361888 - 361859 - R 100 -13.7 -4.7871 | overlap 361860 AACCATCAGTAAAAA CCAGCAGCCAATA ACCT CATTGGCTGCTGA AGAAATACAATATTA TERM 383 361887 - 361860 - R 100 -15 -3.46141 | overlap 361859 ACCATCAGTAAAAAC CAGCAGCCAATA ACCT CATTGGCTGCTG AAGAAATACAATATT YpsIP31758_0312 362419 - 361901 - | hypothetical protein TERM 384 363303 - 363276 - g 82 -5.6 -5.01732 | AATGTGGCGAAAAAA GTTCCAGAGCTC AAAA AAATTCTGGAAC TACGGGAAGCGTTAG YpsIP31758_0313 362943 - 363440 + | hypothetical protein TERM 385 364192 - 364211 + G 73 -8.6 -3.80094 | AAATGGCGTGCTCTG CGTGAGTC TGAA GATTCACG TTATCTTGGTTTGAC TERM 386 364666 - 364652 - g 76 -8.6 -3.97406 | overlap 364643 364662 GGAAAATGGCAGAAA CCAACT ACA AGTTGG GCACGCAACTGCCGT YpsIP31758_0314 363508 - 364989 + | hypothetical protein YpsIP31758_0315 364996 - 365436 + | hypothetical protein TERM 387 365642 - 365611 - g 73 -2.4 -5.00884 | gap 1, opp_overlap 365612 365615, overlap 365612 365615 ACCTGCGTGAAAAAA TCGATGA-TCAATTC CCT GAATTGACTCATGGT TTACTGAATATGTTG YpsIP31758_0316 365436 - 367256 + | hypothetical protein YpsIP31758_0317 367277 - 368308 + | hypothetical protein TERM 388 368457 - 368446 - g 76 -2.2 -5.28778 | overlap 368450 ACCATGGATAAAAAA CAAC CAAC GCTG TCATTGCGGGTCGTC YpsIP31758_0318 368434 - 369750 + | FHA domain-containing protein TERM 389 369967 - 369954 - g 78 -5.2 -4.87893 | AACCCTAATGAAAAA GGGG AAGCGG CCCC GACTGAGATAGTGGT YpsIP31758_0319 369750 - 370295 + | putative lipoprotein TERM 390 371070 - 371089 + G 71 -6.4 -4.15453 | ATTTGGCACATCAGG CGATTCTG CATC CAGAAGCG TTTTACCATCAGTTG YpsIP31758_0320 370298 - 371644 + | hypothetical protein YpsIP31758_0321 371644 - 372411 + | hypothetical protein TERM 391 373182 - 373172 - g 73 -3.2 -4.83615 | CAGGTGCCAGAAAAA CTGC GTA ACAG CGAGTTGATGACGCT clpV2 372422 - 375025 + | type VI secretion ATPase TERM 392 375755 - 375743 - g 75 -6.2 -4.54821 | ACGGTAACGACAAAA GCCG TATTG CGGC CAGTTTGGGGCTATC YpsIP31758_0323 375022 - 375819 + | Fis family transcriptional regulator YpsIP31758_0324 375816 - 376502 + | hypothetical protein YpsIP31758_0325 376508 - 377896 + | ImpA domain-containing protein TERM 393 377983 - 378005 + G 84 -12.8 -3.23711 | opp_overlap 377983 377982, overlap 377974 TTCCTCGCCTTAAAG CGTCAATACC GGT GGTATTGGCG TTGATGGCTTGTGCG TERM 394 378259 - 378245 - g 71 -2.8 -4.91084 | TATCGAACAACAAAA CCACTA CCT CAATGG CTGGAAGCACCAACT TERM 395 379295 - 379270 - g 83 -6.9 -5.00616 | TCTGGCTGCAAAAAA CGAGAAAGCGA ATGT TCATTTTCTCG GGGGTGGGTGCCCTG TERM 396 380612 - 380594 - g 77 -8.8 -4.18018 | overlap 380595 GTTGGCGATCCAAAA CTCGCCCG CGC CGGGCAAA GCGGCGTTGAAGGCG TERM 397 380611 - 380595 - g 73 -10.1 -3.10597 | overlap 380594 TTGGCGATCCAAAAC TCGCCCG CGC CGGGCAA AGCGGCGTTGAAGGC YpsIP31758_0326 377928 - 381461 + | putative lipoprotein TERM 398 381844 - 381834 - g 79 -2.4 -5.47218 | opp_overlap 381834 CCGCACCCAAAAAAA TGGC CTG GCCG GTTTCACCGAGGGCT TERM 399 382828 - 382840 + G 73 -10.5 -3.13403 | opp_overlap 382828, overlap 382826 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA TERM 400 382840 - 382828 - g 75 -10.5 -3.39449 | opp_overlap 382828 382826 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA YpsIP31758_0327 381613 - 382926 + | ImpA domain-containing protein TERM 401 383164 - 383144 - g 81 -9.7 -4.08767 | overlap 383145 CCGAGGTGGCTAAAA CTGCCCTGG ATG CCAAGGCAA AAGTCCTGGACGGCG TERM 402 383163 - 383145 - g 74 -11 -3.05046 | overlap 383144 CGAGGTGGCTAAAAC TGCCCTGG ATG CCAAGGCA AAAGTCCTGGACGGC YpsIP31758_0328 382948 - 385170 + | Rhs element Vgr protein YpsIP31758_0329 385176 - 385634 + | hypothetical protein TERM 403 385770 - 385785 + G 74 -6.8 -4.34488 | overlap 385761 CACCGGCGGGGCGAC GCTGGT CGCT ACCGGC TTTATTGTGGGTATG TERM 404 387635 - 387608 - g 72 -10.6 -2.93348 | GCTACGAATATGATA TCGATGGCCATC TGCT GACGGTCATCGA TGCTGAAAACCATTC YpsIP31758_0330 385627 - 389835 + | RHS/YD repeat-containing protein TERM 405 390634 - 390619 - g 73 -5.4 -4.56597 | CCTTCTCTTGAAAAA GTGGAT TTTT ACCCAC AAAAAAAACATTACA YpsIP31758_0331 389845 - 390717 + | hypothetical protein TERM 406 390721 - 390751 + F 75 -10.4 -2.79796 | overlap 390724 GAAGGGCGTTGATGT CCACCCGGCGTA ATCTGGC TGCGCCGGGTCG TGTCCTACGGTGAAG TERM 407 390724 - 390748 + F 76 -10.7 -2.66634 | overlap 390721 GGGCGTTGATGTCCA CCCGGCGTA ATCTGGC TGCGCCGGG TCGTGTCCTACGGTG YpsIP31758_0332 391172 - 391342 + | hypothetical protein TERM 408 391478 - 391493 + G 74 -6.8 -4.34488 | overlap 391469 CACCGGCGGGGCGAC GCTGGT CGCT ACCGGC TTTATTGTGGGTATG TERM 409 393343 - 393316 - g 72 -10.6 -2.93348 | GCTACGAATATGATA TCGATGGCCATC TGCT GACGGTCATCGA TGCTGAAAACCATGC YpsIP31758_0333 391335 - 395591 + | RHS/YD repeat-containing protein TERM 410 395779 - 395796 + G 83 -2 -5.55664 | gap 1 CATGGGTATTGATGA CGGCACT TATTT AGT-CCG TTTTTTTGCTGATGA YpsIP31758_0334 395591 - 396100 + | hypothetical protein TERM 411 396140 - 396106 - T 73 -5.7 -4.49958 | opp_overlap 396106 396109, overlap 396107 396108 AGTTTATTAAATAAA GGGCTGGAAAGATCC TTTTT GGATCTTTCCAGTTA TTTTTATCAGCTGCT TERM 412 396106 - 396140 + T 100 -10.1 -4.86001 | opp_overlap 396106 396107 396108, overlap 396109 AGTTTATTAAATAAA GGGCTGGAAAGATCC TTTTT GGATCTTTCCAGTTA TTTTTATCAGCTGCT TERM 413 396139 - 396107 - T 74 -9.2 -3.29252 | opp_overlap 396106 396109, overlap 396106 396108 GTTTATTAAATAAAG GGCTGGAAAGATCC TTTTT GGATCTTTCCAGTT ATTTTTATCAGCTGC TERM 414 396138 - 396108 - T 88 -12.7 -2.57069 | opp_overlap 396106 396109, overlap 396107 396106 TTTATTAAATAAAGG GCTGGAAAGATCC TTTTT GGATCTTTCCAGT TATTTTTATCAGCTG TERM 415 396109 - 396137 + T 100 -16.2 -4.53475 | opp_overlap 396108 396107 396106, overlap 396106 TTATTAAATAAAGGG CTGGAAAGATCC TTTTT GGATCTTTCCAG TTATTTTTATCAGCT YpsIP31758_0335 396507 - 396154 - | hypothetical protein YpsIP31758_0336 396728 - 396504 - | hypothetical protein TERM 416 396759 - 396790 + r 93 -12.3 -3.0752 | overlap 396761 GTTGCTTGTGGTTAG CGGGGCTGAGGTG CTGATA CACCTCAACCCTG TGTTAAAATACTGTG TERM 417 396761 - 396788 + r 84 -11.3 -3.09289 | overlap 396759 TGCTTGTGGTTAGCG GGGCTGAGGTG CTGATA CACCTCAACCC TGTGTTAAAATACTG YpsIP31758_0337 397217 - 396810 - | DNA-binding protein TERM 418 397084 - 397116 + g 71 -2.6 -4.95843 | opp_overlap 397088 TATTTATTGTACTGT GAAAGTTGCAAGCC AATAC GGGTCGCGACTTCC TTTTGTGTTTTATGT TERM 419 397470 - 397458 - g 75 -10.5 -3.39449 | opp_overlap 397458 397456 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA TERM 420 397458 - 397470 + G 73 -10.5 -3.13403 | opp_overlap 397458, overlap 397456 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA YpsIP31758_0338 397380 - 397556 + | hypothetical protein TERM 421 397794 - 397774 - g 71 -7.5 -4.08767 | overlap 397775 CCGAGGTGGCTAAAA CCGCCCTGG ACG CCAAGGCAA AAGTACTGGACGCGG TERM 422 399544 - 399565 + G 73 -5.1 -4.65916 | gap 1, opp_overlap 399544, overlap 399546 CCGAGACGATCAAAG TGCGTCGCAG TAC CTGCG-CGAA TTTTATTCAGGTGAA YpsIP31758_0339 397578 - 399776 + | putative VgrG protein TERM 423 399960 - 399946 - g 75 -11.4 -2.74144 | overlap 399945 CTTTGACCGGGAAAT CGGCTC TCT GAGCCG GCAATTAAATCACTA YpsIP31758_0340 399779 - 400201 + | hypothetical protein TERM 424 400341 - 400313 - g 79 -10.2 -3.62096 | opp_overlap 400308, overlap 400331 CGGCATTACGTCAAA CCGCGCTGGG GCAACAGAG CCCGGCGCGG ACGGATTATCAGGTC TERM 425 403753 - 403741 - g 73 -4.7 -4.69027 | overlap 403730 403743 AAACGCAGCCAAAAA GACGG CTA CCGGC CACAGCTGTGGCGCT YpsIP31758_0341 400246 - 404829 + | YD repeat-/RHS repeat-containing protein YpsIP31758_0342 405339 - 405223 - | hypothetical protein TERM 426 405834 - 405856 + r 100 -4 -6.14618 | opp_overlap 405835, overlap 405835 TTTTTAGTGATACAA AGTGACTGGT TTA GCCAGCCACA TTTTTTTGTTTTATA TERM 427 405835 - 405855 + r 75 -7.5 -4.25111 | opp_overlap 405835, overlap 405834 TTTTAGTGATACAAA GTGACTGGT TTA GCCAGCCAC ATTTTTTTGTTTTAT TERM 428 405855 - 405835 - R 80 -9 -4.0641 | opp_overlap 405835 405834 TTTTAGTGATACAAA GTGACTGG TTTAG CCAGCCAC ATTTTTTTGTTTTAT YpsIP31758_0344 406792 - 405893 - | AP endonuclease YpsIP31758_0345 407919 - 406789 - | oxidoreductase, NAD-binding YpsIP31758_0347 408189 - 409055 + | AraC family transcriptional regulator YpsIP31758_0346 409192 - 409046 - | hypothetical protein YpsIP31758_0348 409719 - 409216 - | RbsD/FucU family transport protein YpsIP31758_0349 410654 - 409725 - | putative ribokinase TERM 429 410483 - 410463 - G 83 -11.9 -3.58536 | AAATTCATGGCCAAA GGTGTCATC ACC GACGACACC CGCATAGGCGACCTC YpsIP31758_0351 410698 - 410862 + | hypothetical protein YpsIP31758_0350 411560 - 410859 - | putative deoxyribose-phosphate aldolase YpsIP31758_0352 412033 - 412614 + | NAD(P)H-dependent FMN reductase YpsIP31758_0353 412629 - 413750 + | alkanesulfonate transporter substrate-binding subunit TERM 430 413875 - 413897 + G 70 -9.9 -3.1332 | gap 1, opp_overlap 413873 ATCTACAGCAAATTG CCCAAG-CGG CTGA CCGGCTTGGG TTCGGTGGTGTGTTG ssuD 413769 - 414917 + | alkanesulfonate monooxygenase YpsIP31758_0355 414929 - 415723 + | putative ABC aliphatic sulfonates transporter, permease subunit TERM 431 416153 - 416177 + G 100 -11.3 -4.57882 | AACGTGTTGCACTGG CGCGGGCGCTG ATC CATCGCCCCCG TTTATTGTTGTTGGA YpsIP31758_0356 415720 - 416535 + | aliphatic sulfonates transport ATP-binding subunit TERM 432 416988 - 417014 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 416977, overlap 416983 416989 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 433 416989 - 417015 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 416977, overlap 416983 416988 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 434 417098 - 417115 + T 70 -2.7 -5.00884 | CGCCTTTTTATTCTT GGTGTAA CGCT TTGCATC TTTTTTAAAGCGGCT dinJ 417411 - 417154 - | DNA-damage-inducible protein J TERM 435 417469 - 417428 - H 88 -11.1 -3.75015 | gap 1, opp_overlap 417419 417431 417432, overlap 417431 ATAACCTCCATTAAA TTAC-CCTTATTGTAGCTAC GAT GTAGCTACAATAAGGTGTTT GAGCGATGTTTATTC TERM 436 417431 - 417466 + H 100 -17.2 -3.58329 | gap 1, opp_overlap 417428 417431, overlap 417419 417432 ACCTCCATTAAATTA C-CCTTATTGTAGCTAC GAT GTAGCTACAATAAGGTG TTTGAGCGATGTTTA TERM 437 417465 - 417431 - H 100 -17.4 -2.96873 | opp_overlap 417431 417419 417432, overlap 417428 ACCTCCATTAAATTA CCCTTATTGTAGCTAC GAT GTAGCTACAATAAGGT GTTTGAGCGATGTTT TERM 438 417432 - 417464 + H 100 -20.9 -3.36341 | opp_overlap 417431 417428, overlap 417431 417419 CCTCCATTAAATTAC CCTTATTGTAGCTAC GAT GTAGCTACAATAAGG TGTTTGAGCGATGTT TERM 439 417983 - 417996 + G 70 -8.1 -3.86524 | opp_overlap 417973, overlap 417982 GCAAAGCCGGTTTCC CACCG ACGG CGGTG TTTGTCGCGACCTGT TERM 440 418712 - 418735 + G 71 -4.6 -4.64657 | gap 1, opp_overlap 418694, overlap 418715 GCGGTGGTAAAGCGC TGACCACTGAC TCC GTCAGTAG-CA TTTTTGCGGGTTTGG YpsIP31758_0358 417811 - 419166 + | xanthine/uracil permease family protein TERM 441 419286 - 419322 + F 76 -9.3 -3.45514 | overlap 419285 419277 TAATAACAATTGGTT GCAGGCATCGGGGGGGA TTA TCCTCCCCGATGTGAAC TTAATGTTATATATC YpsIP31758_0359 419483 - 421132 + | Na+/H+ antiporter TERM 442 421144 - 421162 + T 100 -12.4 -3.61268 | TTAATATCTTACGGA CGGGGCTA ATT TGGCCCCG TTTACCGATTACATG YpsIP31758_0360 422537 - 421350 - | hypothetical protein TERM 443 421915 - 421947 + g 88 -8.4 -4.74801 | opp_overlap 421915 421914 ATGGGTTCACCAAAG GCGGTGACTAACGC ATTTC GCGTTAATGGCCGC TTTTTGCTCAGATTA htrB2 423609 - 422689 - | lipid A biosynthesis palmitoleoyl acyltransferase YpsIP31758_0362 423878 - 424003 + | hypothetical protein YpsIP31758_0363 424140 - 424259 + | hypothetical protein YpsIP31758_0364 424461 - 425450 + | carbohydrate ABC transporter periplasmic-binding protein YpsIP31758_0365 425654 - 427150 + | carbohydrate ABC transporter ATP-binding protein TERM 444 427167 - 427184 + G 73 -5.5 -4.55118 | opp_overlap 427159 CTAAAACTGCGCCAA CTCACGG GGCA CCATGAG TTTTATCTCGGGTTG YpsIP31758_0366 427143 - 428132 + | carbohydrate ABC transporter permease YpsIP31758_0367 428134 - 429087 + | carbohydrate ABC transporter permease YpsIP31758_0368 429106 - 430743 + | pentulose kinase YpsIP31758_0369 430740 - 431345 + | SIS domain-containing protein TERM 445 431404 - 431379 - T 86 -9 -4.32857 | gap 1, opp_overlap 431379 CGCGTGAAAGAGAAA CACCGCAACGG TATGG CCGC-GCGGTG TTTTTTTATGTCAGT TERM 446 431379 - 431404 + T 100 -7.5 -5.72616 | gap 1, opp_overlap 431379 CGCGTGAAAGAGAAA CACCGCAACGGT ATG GCCGC-GCGGTG TTTTTTTATGTCAGT YpsIP31758_0370 432403 - 431552 - | putative glutathione S-transferase YghU TERM 447 431946 - 431925 - G 75 -7.9 -4.20883 | opp_overlap 431940, overlap 431940 431941 TAAAAATGCCCAAAA CCGCCCCCT AAAT AAGGGGCTG CACCTTGTAGCCAGA TERM 448 432030 - 432012 - G 71 -6.7 -4.1552 | opp_overlap 432000 GATTTCGGTAAGAAA TGACCGA ATTTA TCGGCCA AATAAAGCAGAATGG YpsIP31758_0371 432657 - 434003 + | hypothetical protein TERM 449 434027 - 434072 + T 88 -6.8 -5.12707 | opp_overlap 434027 434026 ATCTTTCCTGACAAG CCCGGGTATGAACTGTCC AACTTTATGG GGCCAGTCCATGCGCGGG TTTTTTACGCTTTAA YpsIP31758_0372 435330 - 434155 - | hypothetical protein TERM 450 434212 - 434227 + g 85 -6.2 -5.04082 | overlap 434218 CTCAAGAATGTTAAG TGTCTT GGAT AAGACA TTTTCTTGTTCTTTG TERM 451 435229 - 435213 - G 71 -2.9 -4.93296 | overlap 435214 435217 CCATGACGATAAAAA CCAGCAC AGG GTCCTGA GTCTCACTTTTAAGA YpsIP31758_0373 435391 - 435504 + | hypothetical protein TERM 452 435583 - 435568 - T 100 -6.1 -5.65177 | ATAGGCACAAAAAAA CCTGC ACGGAG GCAGG TTGAGGTTATTGACA TERM 453 435750 - 435771 + T 100 -10.2 -5.12068 | GTTTGTCAGCAGTCT GAACCTGC ACGGAG GCAGGTTC TTTTTATTCGGTATG YpsIP31758_0374 436063 - 435851 - | cold shock DNA-binding domain-containing protein YpsIP31758_0375 436535 - 436323 - | cold shock DNA-binding domain-containing protein YpsIP31758_0376 437007 - 436795 - | cold shock DNA-binding domain-containing protein YpsIP31758_0377 437253 - 437438 + | hypothetical protein TERM 454 437507 - 437471 - T 78 -10.3 -3.33162 | gap 1, overlap 437472 TACGGCATTTGATAA CCAGTCCGTAGGCATG GGCTAT CA-GCCTACAGACTGA AAACCGGGGTTAACG TERM 455 437506 - 437472 - T 80 -11.6 -2.59683 | gap 1, overlap 437471 ACGGCATTTGATAAC CAGTCCGTAGGCATG GGCTAT CA-GCCTACAGACTG AAAACCGGGGTTAAC TERM 456 437532 - 437511 - T 70 -5.8 -4.26188 | opp_overlap 437511 CCTACAGACTGAAAA CCGGGG TTAACGTGCC CCCCGG TTGCTACGTTTAGCG pcp1 438009 - 437542 - | outer membrane lipoprotein PcP YpsIP31758_0379 438485 - 439297 + | metallo-beta-lactamase family protein YpsIP31758_0380 439362 - 440252 + | 6-phosphogluconate dehydrogenase YpsIP31758_0381 440444 - 440839 + | carboxymuconolactone decarboxylase family protein YpsIP31758_0382 440993 - 442357 + | major facilitator transporter YpsIP31758_0383 442447 - 443121 + | GntR family transcriptional regulator YpsIP31758_0384 443187 - 443663 + | hypothetical protein TERM 457 444411 - 444386 - T 75 -2.4 -5.32882 | CATTATTATAAAAAA GGCGCTAACC AATTAA GGAAAACGCC TTTTTAAACAACATT fis 444737 - 444441 - | DNA-binding protein Fis YpsIP31758_0386 445727 - 444762 - | tRNA-dihydrouridine synthase B YpsIP31758_0387 446296 - 446183 - | hypothetical protein prmA 447214 - 446333 - | ribosomal protein L11 methyltransferase TERM 458 446366 - 446395 + g 71 -7.2 -3.99324 | AATGCGGCACCATTC TTCTTTCTCGGC GACTGG GTCGAGAATGAA TTTATCCTCATAGGC TERM 459 446534 - 446566 + g 78 -9.2 -4.09685 | gap 1, opp_overlap 446527 CAGAATATTGGCCAC GACCACGTCAGCAGA TAGT TCTGCGGGC-TGGTC TTTTGCCAGATACAG TERM 460 447231 - 447262 + r 100 -15.9 -2.77148 | overlap 447229 447226 447224 GCAATTCTCTCAAGC GCCGGTATCGGGG CCATAA CCACGATACCGGC TGATGTGTTGATAGA panF 448744 - 447290 - | sodium/panthothenate symporter TERM 461 448625 - 448611 - G 75 -5.6 -4.66938 | ATCGCCAATACAAAA CCGCCC ATC GAACGG TTGCCGATAAAATAT YpsIP31758_0390 448976 - 448734 - | hypothetical protein TERM 462 449887 - 449902 + r 82 -4.8 -5.26875 | opp_overlap 449887 AATTTTTATTATAAC CTATTT TCTA AAATAG TTTTTTCATTGACGC TERM 463 450456 - 450424 - R 86 -12.1 -3.20435 | opp_overlap 450425, overlap 450425 TTAATTAGCCATCAA GGCCTGAATTCCGCA CTT TACAGAATTCAGGCT TTTTAACTTCAGTTT TERM 464 450425 - 450455 + r 100 -11.2 -4.75776 | opp_overlap 450424 450425 TAATTAGCCATCAAG GCCTGAATTCCGCA CTT TACAGAATTCAGGC TTTTTAACTTCAGTT TERM 465 450455 - 450425 - R 100 -15.6 -2.5194 | opp_overlap 450425, overlap 450424 TAATTAGCCATCAAG GCCTGAATTCCGCA CTT TACAGAATTCAGGC TTTTTAACTTCAGTT TERM 466 450529 - 450485 - R 89 -6.6 -5.26316 | gap 2, opp_overlap 450484, overlap 450486 TTATGCCATAAAAAA CTGCCCCTTCCAATATCTGGTT ATT ATCCA-ATATTGGG-GGGGCAA CTCAATTAGCCGGCC TERM 467 450528 - 450486 - R 72 -7.9 -3.75067 | gap 2, opp_overlap 450484, overlap 450485 TATGCCATAAAAAAC TGCCCCTTCCAATATCTGGTT ATT ATCCA-ATATTGGG-GGGGCA ACTCAATTAGCCGGC accC 451932 - 450583 - | acetyl-CoA carboxylase biotin carboxylase subunit accB 452408 - 451944 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit aroQ 453018 - 452566 - | 3-dehydroquinate dehydratase YpsIP31758_0394 453900 - 453289 - | putative sulfite oxidase subunit YedZ yedY 455000 - 453900 - | putative sulfite oxidase subunit YedY TERM 468 454286 - 454251 - G 73 -7.4 -4.14257 | opp_overlap 454252 GCCAACAACCATAAA GGCCAGCGGGTGCATG GCTT CATCCAACCGCAGCCC TTCGACATAGGGGTA TERM 469 454312 - 454326 + g 71 -4.2 -4.82901 | opp_overlap 454296 GGGTAGTCCAGTCCC CCGC CAATAAA GCGG TTTTTCTGCCCAGGC TERM 470 455119 - 455151 + r 89 -12 -3.26947 | opp_overlap 455114 455113 AATATGAAATTTCTA CCACCGAGGCAAGT GTGAA ACTGACCTCGGTGG TTGCTGTAACGATTA YpsIP31758_0396 456200 - 455223 - | putative quinone oxidoreductase, YhdH/YhfP family protein TERM 471 456352 - 456339 - H 84 -3.8 -5.4433 | AGACAGAAATAAAAA CCCT GTGTTA AGGG TGAGCCAATATAGCG TERM 472 456728 - 456713 - g 75 -5.4 -4.77165 | TGTGCCAGAAGAAAA TGGAAC AACG GCTCCA AAGTATTGTGACCGC YpsIP31758_0397 456601 - 458517 + | regulatory protein CsrD TERM 473 458519 - 458509 - f 84 -2.6 -5.63517 | opp_overlap 458518 TCCGGAAAGAAAAAA TATT CGT AATA GGGCTATGTTAGCCT TERM 474 459086 - 459101 + G 75 -6 -4.55295 | opp_overlap 459085 459087, overlap 459087 TTCGTCCAATGAAAG ACGGCG TTAT CGCCGA TTTCTTTGTCACGGA TERM 475 459100 - 459087 - g 74 -9.5 -3.54146 | opp_overlap 459086 459087, overlap 459085 TCGTCCAATGAAAGA CGGCG TTAT CGCCG ATTTCTTTGTCACGG TERM 476 459087 - 459100 + G 73 -9.5 -3.32695 | opp_overlap 459087 459085, overlap 459086 TCGTCCAATGAAAGA CGGCG TTAT CGCCG ATTTCTTTGTCACGG TERM 477 459303 - 459282 - g 73 -10.1 -3.14878 | opp_overlap 459288, overlap 459280 GTTCCTAATTGAAGA GCCGATGGC TGCG GCCATTGGC GCGGGCTTGCCTGTT mreB 458854 - 459897 + | rod shape-determining protein MreB mreC 460101 - 461096 + | cell wall structural complex MreBCD transmembrane component MreC mreD 461093 - 461581 + | rod shape-determining protein MreD maf2 461595 - 462188 + | Maf-like protein cafA 462178 - 463647 + | ribonuclease G TERM 478 465272 - 465251 - g 72 -10.1 -3.01791 | opp_overlap 465255, overlap 465253 AGCCGTGGCTGAAGA TACTGGCGG GCAT CCGCCTGTA TGATGCCACCGATGC TERM 479 466209 - 466188 - g 71 -3 -4.96848 | gap 1 GCCGCTAGATAAAAA CAGCGGTCA GGCAT TG-CCACTG TATGTTCAGGTGAAC YpsIP31758_0403 463741 - 467658 + | hypothetical protein YpsIP31758_0404 467655 - 468524 + | hydrolase, carbon-nitrogen family protein tldD 468536 - 469981 + | protease TldD YpsIP31758_0406 473102 - 470313 - | putative insecticidal toxin complex protein TERM 480 472705 - 472680 - G 71 -3.1 -4.96848 | opp_overlap 472680 472681 472701, overlap 472681 TTCGCCATAGAAAAA GCGGTCGGTAA CCGT TTTCAGGCCGC CTTTGGCTTGCTCGC YpsIP31758_0407 476171 - 473406 - | putative insecticidal toxin complex protein TERM 481 475774 - 475749 - G 71 -3.1 -4.96848 | opp_overlap 475749 475750 475770, overlap 475750 TTCGCCATAGAAAAA GCGGTCGGTAA CCGT TTTCAGGCCGC CTTTGGCTTGCTCGC YpsIP31758_0408 478931 - 476199 - | putative insecticidal toxin complex protein TERM 482 476500 - 476513 + g 74 -3.1 -5.16237 | opp_overlap 476500 TTGGATGCAATAAAT GAAGG GATT TCTTC TTTTTTCATCCAATT TERM 483 478534 - 478509 - G 71 -3.1 -4.96848 | opp_overlap 478509 478510 478530, overlap 478510 TTCGCCATAGAAAAA GCGGTCGGTAA CCGT TTTCAGGCCGC CTTTGGCTTGCTCGC YpsIP31758_0409 481832 - 478956 - | putative insecticial toxin complex protein TERM 484 478997 - 478984 - G 71 -6.7 -4.14627 | opp_overlap 478982 478989 TTGCTATATAAATAA CGTGA GTAC TCACG TGCTGCTTTTATGTC TERM 485 479030 - 479041 + g 74 -3 -5.16071 | TTGTTCGTTCTCCGG CAAA GGGG TTTG TTTTTCTTACTAATT TERM 486 481435 - 481410 - G 71 -3.1 -4.96848 | opp_overlap 481410 481411 481431, overlap 481411 TTCGCCATAGAAAAA GCGGTCGGTAA CCGT TTTCAGGCCGC CTTTGGCTTGCTCGC YpsIP31758_0410 482006 - 481887 - | hypothetical protein YpsIP31758_0411 482406 - 482047 - | hypothetical protein YpsIP31758_0412 482804 - 482403 - | M15 family peptidase YpsIP31758_0413 483119 - 482817 - | putative phage-related protein TERM 487 483239 - 483213 - R 70 -9.4 -2.8805 | opp_overlap 483205 483202 ATGACTGGGTATAGA GCCTGACCGG GAAGGGG CCGGTTAGGC TCTGCGGCTAATATT YpsIP31758_0414 487770 - 483253 - | putative insecticidal toxin complex protein TERM 488 484239 - 484249 + g 73 -3.2 -4.88388 | ATATCATTTGGGTAA TGGC ACA GCTA TTTTTATCCCATTCT TERM 489 486333 - 486361 + g 78 -9 -4.09864 | gap 1 CCCAATCCAGCTTGC CGTCACCATTGAT ATCC ATCAA-GGTGGCG TTTTCCCCCATGGCT YpsIP31758_0415 491421 - 487828 - | putative insecticidal toxin complex protein TERM 490 487876 - 487887 + g 76 -2.2 -5.27938 | GATGTCGCTCAGGCT TTGC AGCA GCAG TTTTTGTTTGCCGGT TERM 491 488685 - 488700 + g 71 -4.7 -4.59511 | overlap 488683 GGCCTTGCTCTAACT CAGCT AAATTG AGCTG TTTTTGCGCCATATT TERM 492 491363 - 491393 + g 71 -2.7 -4.93877 | gap 1, overlap 491371 491375 TTAGCAAGATAGTAG TTAACCAAT-GCGT CGCG GCGCGATTCGTTAA TTTTATTTAATACAG YpsIP31758_0416 494124 - 491461 - | putative insecticial toxin complex protein TERM 493 493800 - 493830 + g 75 -7.6 -4.2461 | overlap 493795 CTTGTAGTTTTGCTA TTGGCATTTCTGGC TCA GTTGGAAAGGCCAA TTTGTTGATGCGACT YpsIP31758_0417 495219 - 494332 - | LysR family transcriptional regulator aaeR 496392 - 495481 - | putative DNA-binding transcriptional regulator TERM 494 496757 - 496771 + G 83 -5 -5.22768 | GATATTTCTTGAGCT GCTAAT TTC ATTGGC TTTGTTTTTTGTTGT YpsIP31758_0419 496695 - 496898 + | hypothetical protein aaeA 496906 - 497841 + | p-hydroxybenzoic acid efflux subunit AaeA aaeB 497843 - 499798 + | p-hydroxybenzoic acid efflux subunit AaeB TERM 495 499937 - 499959 + F 71 -7 -4.22858 | opp_overlap 499941, overlap 499941 CGGTTCGAGCCCTCA TAAAGGCGCT CAC GGCGTCTTTG TTATTTCTCTCTTCT TERM 496 499941 - 499955 + F 75 -5.6 -4.65458 | opp_overlap 499941, overlap 499937 TCGAGCCCTCATAAA GGCGCT CAC GGCGTC TTTGTTATTTCTCTC TERM 497 500301 - 500282 - g 81 -7.8 -4.56597 | overlap 500248 500283 CTGCCTGGCGAAAAA CGCCCGCT AAAC AGCGAGCA GAGATTTTACAGCGT gabD 500065 - 501534 + | succinate-semialdehyde dehydrogenase (NADP+) YpsIP31758_0423 501729 - 502202 + | ribonuclease Ba YpsIP31758_0424 502207 - 502488 + | barstar TERM 498 502539 - 502592 + T 100 -14.6 -4.58283 | gap 1, opp_overlap 502544 ATAGATTATGCCCGC CAACAGTATTGAGTCGGGAGCCGGG AGTGA CCCGGC-CCCGCCCGATTACTGTTG TTTTTCAGCCAGTTC TERM 499 502587 - 502544 - T 71 -9.5 -3.02144 | gap 1, opp_overlap 502539 TTATGCCCGCCAACA GTATTGAGTCGGGAGCCGGG AGTGA CCCGGC-CCCGCCCGATTAC TGTTGTTTTTCAGCC YpsIP31758_0425 503132 - 502584 - | hypothetical protein TERM 500 502895 - 502907 + g 73 -4.7 -4.71318 | overlap 502895 CAATCAACTGGATCT GGCGG CGG CGGCC TTCTTTTTTGATCTT TERM 501 502895 - 502910 + g 76 -2.4 -5.30189 | overlap 502895 CAATCAACTGGATCT GGCGGC GGCG GCCTTC TTTTTTGATCTTCTG TERM 502 502967 - 502980 + g 71 -4.5 -4.57569 | CTTCATCCAACGGGA TGCGC TCGA GTGCA TTTTTACCCAGATCA TERM 503 503072 - 503082 + g 83 -2.4 -5.54907 | CCCAGATAATCTCAT CGTC ATC GTCG TTTTTATTTTCTGGG TERM 504 503352 - 503338 - g 73 -10 -3.3344 | ACTCAAGTTGCAGAA CAGCGT AAA ACGCTG GAACAAGCTGTTGCA pmbA 503311 - 504651 + | peptidase PmbA TERM 505 504706 - 504682 - f 100 -15.8 -3.29511 | opp_overlap 504682 504701 CTTACTGTTCCACAA CTCGCGGGTA GAAAA TACCCGCGAG TTTGCCTGCGCTTTT TERM 506 504682 - 504706 + F 100 -15.8 -3.67989 | opp_overlap 504682, overlap 504701 CTTACTGTTCCACAA CTCGCGGGTA GAAAA TACCCGCGAG TTTGCCTGCGCTTTT TERM 507 505262 - 505275 + G 71 -6.7 -4.24726 | TGTTTATATTAGATT CTGAC GTTG GTCAG TTTTACCCTTATTGT YpsIP31758_0427 504775 - 505419 + | hypothetical protein YpsIP31758_0428 505627 - 506013 + | cytochrome b562 TERM 508 506138 - 506170 + T 100 -15.7 -3.83921 | opp_overlap 506131 506142 TATAAAAGTGAGCGA TAGAGGGTAATGGCC TGC GGCGGTTACCCTCTA TTATCTTCTATTACC rnk 506647 - 506237 - | nucleoside diphosphate kinase regulator TERM 509 506581 - 506568 - G 74 -9.5 -3.54475 | overlap 506578 GTTGCGACCACAGAA CCGGC AAAA GCCGG TTGCGCTAGCAACGC TERM 510 506716 - 506684 - R 100 -14.1 -5.30339 | opp_overlap 506689 AGCAAAACATAAAAA CAACACCCCCACGCC ATA GGAGAGGGGGTGTTA GAAAATAGCTTAATG TERM 511 506689 - 506711 + r 76 -10.4 -3.03243 | opp_overlap 506684 AACATAAAAACAACA CCCCCACGCC ATA GGAGAGGGGG TGTTAGAAAATAGCT treC 508667 - 507000 - | trehalose-6-phosphate hydrolase TERM 512 508014 - 508000 - G 88 -8.5 -4.84359 | overlap 507978 CCATCGGTATAAAAA CGGCG GCCAT CGCCG TCCAGATCATTAGGG TERM 513 508725 - 508692 - R 75 -5.9 -4.67353 | gap 1, overlap 508695 508696 TTATTCATTGAAAAA TGACCCCGCCAGACGA TCA CCG-CTGGCGGGAGAA CACAACTTACTATCG TERM 514 508722 - 508695 - R 89 -12 -3.26405 | gap 1, overlap 508692 508696 TTCATTGAAAAATGA CCCCGCCAGACGA TCA CCG-CTGGCGGGA GAACACAACTTACTA TERM 515 508721 - 508696 - R 91 -13.3 -2.55361 | gap 1, overlap 508695 508692 TCATTGAAAAATGAC CCCGCCAGACGA TCA CCG-CTGGCGGG AGAACACAACTTACT treB 510193 - 508778 - | trehalose(maltose)-specific PTS system components IIBC TERM 516 509298 - 509275 - G 71 -8.8 -3.65143 | overlap 509273 ACAGGAAACCAAATA GTGCCGCACC GACC GGTGCGAAAC TGCCGGTCATCACCG TERM 517 510044 - 510058 + g 76 -7.2 -4.32436 | overlap 510040 GCCTTTGACCATTGA GAGATT TTC AATCTC TTTTGGTGATGCTAT TERM 518 510497 - 510510 + r 79 -6.7 -4.66938 | opp_overlap 510497, overlap 510493 TTTATTTTTATGGAA TGGGA ACGT TCCCA TTTTGTATTGAAGAT treR 511557 - 510604 - | trehalose repressor TERM 519 511194 - 511209 + g 74 -9 -3.63073 | opp_overlap 511191 511188 AACCGAACAGGATCA CGCCAT CAAC ATGGCG TTGTTGCAGAATATG TERM 520 511688 - 511718 + r 88 -7 -5.15634 | opp_overlap 511688 CTGGCAGCATAGGAA TACCCTAACG AATTTTCTCAC CGTTAGGGTA TTTTTTACTGCGGTG YpsIP31758_0433 512267 - 511791 - | hypothetical protein TERM 521 512180 - 512190 + g 80 -6.8 -4.74706 | overlap 512187 TATCAGGTAATGGGA TGGC GAC GCCA TTTTTGGCTATTGCG TERM 522 512554 - 512515 - R 100 -26 -5.06016 | opp_overlap 512523 512525 AGGAGAGAAATAAAA TCACCACATACGGCTGGC GATA ACCAGCCGTATGTGGTGA TGGGGGAGGGATTAA TERM 523 512523 - 512546 + r 89 -12.5 -2.82516 | opp_overlap 512515, overlap 512525 AATAAAATCACCACA TACGGCTGG CGATAA CCAGCCGTA TGTGGTGATGGGGGA TERM 524 512525 - 512544 + r 79 -10.7 -2.96216 | opp_overlap 512515, overlap 512523 TAAAATCACCACATA CGGCTGG CGATAA CCAGCCG TATGTGGTGATGGGG YpsIP31758_0434 512952 - 512566 - | putative endoribonuclease L-PSP pyrI 513554 - 513090 - | aspartate carbamoyltransferase regulatory subunit pyrB 514501 - 513566 - | aspartate carbamoyltransferase catalytic subunit TERM 525 514614 - 514598 - R 100 -13.7 -6.06529 | GACAGACAAAAAAAA GCCCCTC AAC GAGGGGC CTTACAGGATCGGTT YpsIP31758_0437 515111 - 514839 - | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YpsIP31758_0438 515962 - 515108 - | hypothetical protein TERM 526 516041 - 516059 + r 74 -10.3 -2.60496 | opp_overlap 516013 516014, overlap 516042 516044 TACAAACCGGAGTGT GGTGGGT GCGGA ACCCACC CTCTTTCGAGCCGCA ptsN 516750 - 516268 - | sugar-specific enzyme IIA component of PTS TERM 527 516778 - 516817 + r 100 -21.6 -2.88249 | opp_overlap 516767 516786, overlap 516786 TTAAGCGCTGTTTAC GCCAGATACCGGTGGGAA TAAA TATCCACCGGTATCTGGC TATGTAGCGAGTGTA YpsIP31758_0440 517155 - 516868 - | putative sigma(54) modulation protein TERM 528 516999 - 517010 + g 74 -4.4 -4.88646 | CATTCACATGTACCG TTGC TTCT GCAA TTTGTTTTACTTTTT rpoN 518612 - 517179 - | RNA polymerase factor sigma-54 TERM 529 517437 - 517427 - G 77 -6.8 -4.62336 | opp_overlap 517427 517420 ACTTCAGTTCAAAAA TCCC TCG GGGA CTGTGCAAGAATTTC YpsIP31758_0442 519399 - 518674 - | putative ABC transporter ATP-binding protein YhbG yhbN 519951 - 519406 - | hypothetical protein YpsIP31758_0444 520498 - 519935 - | hypothetical protein kdsC 521058 - 520495 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase kdsD 522454 - 521468 - | D-arabinose 5-phosphate isomerase YpsIP31758_0447 523539 - 522565 - | putative calcium/sodium:proton antiporter TERM 530 523137 - 523127 - G 70 -2.4 -4.9645 | overlap 523128 ATCAGAACAATAAAA GCGG CAG CAGC CAAGAGCAAGATGAC YpsIP31758_0448 523804 - 524622 + | putative ABC transporter ATP-binding protein YrbF YpsIP31758_0449 524840 - 525622 + | putative ABC transporter, permease protein YrbE YpsIP31758_0450 525627 - 526184 + | mce family protein ttg2D 526197 - 526820 + | toluene tolerance protein Ttg2D TERM 531 526950 - 526926 - g 86 -12.2 -3.5764 | opp_overlap 526927 AACTGGATCGTGAAA CGCTGTTACC GCTTT GGCAACAGCG TGAAACCTTGCTGGC YpsIP31758_0452 526856 - 527158 + | putative anti-anti-sigma factor TERM 532 527197 - 527225 + F 84 -6.1 -5.04868 | gap 1, opp_overlap 527197 AGGTAAGATAATCAA GCTCCTGTGCAT AATGGC AT-CACAGGGGC TTTTCTTTAGTTTCA YpsIP31758_0453 527305 - 527559 + | putative BolA protein murA 527713 - 528975 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 533 529059 - 529035 - T 100 -8.6 -5.27335 | opp_overlap 529035 TTCGGTAAATAAAAA TGCCAGCC GGTGATTGG GGCTGGCA TTTTTTATGTTTATA TERM 534 529035 - 529059 + T 100 -8.6 -5.59879 | opp_overlap 529035 TTCGGTAAATAAAAA TGCCAGCC GGTGATTGG GGCTGGCA TTTTTTATGTTTATA degS 530244 - 529156 - | serine endoprotease TERM 535 530295 - 530321 + r 100 -15.2 -4.8543 | opp_overlap 530284, overlap 530296 AATAGCATGAGTTAG GCGGACACAGCA TCG TGCTGTGTCCGA TTTTTCTGCAAATTA TERM 536 530296 - 530320 + r 100 -18.7 -3.50535 | opp_overlap 530284, overlap 530295 ATAGCATGAGTTAGG CGGACACAGCA TCG TGCTGTGTCCG ATTTTTCTGCAAATT degQ 531707 - 530334 - | protease DegQ TERM 537 530987 - 531015 + g 73 -9.7 -3.35992 | gap 1, opp_overlap 530989 AGCCGATACCGATAT TACCGCCA-CCT GGCGCA AGGATGGCGGTA TTAATTCCGATCAGT YpsIP31758_0457 532382 - 531978 - | cytochrome d ubiquinol oxidase subunit III TERM 538 532407 - 532418 + H 71 -4.4 -4.7629 | TTTTTTGACTTCATT GTTC AGCA GAAC TTTTTCACTTAATAA YpsIP31758_0458 532606 - 533733 + | ATPase, AFG1 family protein TERM 539 533788 - 533807 + F 81 -11.4 -2.76249 | AATGCTATTCTATGG CGGGCGAC ATTT GTCGTCCG TACTTAACATGTTTA TERM 540 533923 - 533899 - f 71 -8.8 -3.33162 | opp_overlap 533903, overlap 533903 GACCCCACGTTACAA CAAAGTTTTT TTCCC AAAAACTTTG ATAGTGCCAGCATTG TERM 541 534247 - 534230 - g 78 -5.5 -4.91712 | CTGAACGCAGAAAAA GTTGCTG TAAC CGGCAAC AAGCGTACAGACAAG rplM 534047 - 534475 + | 50S ribosomal protein L13 rpsI 534490 - 534882 + | 30S ribosomal protein S9 YpsIP31758_0460 535076 - 534879 - | hypothetical protein TERM 542 534935 - 534919 - G 100 -13.7 -4.62783 | opp_overlap 534919 GATTGATGGTAAAAA CCCGGTG TCT CACCGGG TTTTTTTATGCCTGA TERM 543 534919 - 534935 + g 100 -13.7 -5.64274 | opp_overlap 534919 GATTGATGGTAAAAA CCCGGTG TCT CACCGGG TTTTTTTATGCCTGA sspA 535256 - 535897 + | stringent starvation protein A TERM 544 536399 - 536364 - g 73 -9.6 -3.41602 | gap 1, opp_overlap 536391 TTCACCGGATGATAA GCCGCCGCAACCGCCAC GGA GTGGTGGCCGCC-CGGC ATTACGCGTGGTTAA sspB 535903 - 536418 + | ClpXP protease specificity-enhancing factor TERM 545 536452 - 536480 + T 70 -5.2 -4.51238 | gap 1, overlap 536457 ATACAGGCTCTATCT C-TTCAGGGCGGC GTTA GCCGCCCTTATCG TTTCTGTTTTGTGCG TERM 546 536457 - 536474 + T 100 -14.1 -3.69613 | overlap 536452 GGCTCTATCTCTTCA GGGCGGC GTTA GCCGCCC TTATCGTTTCTGTTT YpsIP31758_0464 537056 - 536571 - | hypothetical protein TERM 547 537513 - 537487 - R 72 -7.2 -3.9749 | gap 1, overlap 537488 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCCCCAGGGAAG TERM 548 537588 - 537626 + r 71 -6.7 -4.23647 | gap 1, opp_overlap 537594, overlap 537579 CACTTTGTCAATAAC CTCAAAGGGCGGGTTC TGTGAATT GAACCCGCCCTA-GCG TTTATTGAATGATTT TERM 549 537621 - 537594 - R 100 -14.2 -3.72051 | opp_overlap 537588 537579 GTCAATAACCTCAAA GGGCGGGTTC TGTGAATT GAACCCGCCC TAGCGTTTATTGAAT gltD 539074 - 537656 - | glutamate synthase subunit beta TERM 550 538616 - 538595 - G 95 -15.1 -2.8632 | overlap 538587 538585 TAATACATCAGCACA GGCCAGCCC GGCA GGGCCGGCC CCGATCACGGCCACA TERM 551 538922 - 538957 + g 79 -9.6 -3.89695 | opp_overlap 538933 TTCACAGTACGGGTT GCCGCAGGACAGGCAG CGAT CGGCCTGTGCTTTGGC TTGTGTTTCTGAGAA gltB 543541 - 539084 - | glutamate synthase subunit alpha TERM 552 542795 - 542817 + g 73 -9.8 -3.33419 | overlap 542794 542790 542809 GGCACGCGCCTTGGC CCATTGGCGG TTA CCGGCGATGG TGTTGATTTCGCCGT YpsIP31758_0467 544105 - 544224 + | hypothetical protein TERM 553 544979 - 544969 - g 77 -6.8 -4.60924 | opp_overlap 544974 GAAACCTTGGAAAAA GTGG TCA CCAC CGGTGTTGATGGGAT YpsIP31758_0468 544363 - 545286 + | radical SAM family protein YpsIP31758_0469 545570 - 547906 + | aerobic respiration control sensor protein ArcB TERM 554 547927 - 547904 - f 93 -4.4 -5.81032 | overlap 547907 GAAGTTGAAAAAAAA TAACCCCGAC CGAG GCCGGGGTGC GCGAAGACTGCGCCA TERM 555 547924 - 547907 - f 100 -10.5 -4.96028 | overlap 547904 GTTGAAAAAAAATAA CCCCGAC CGAG GCCGGGG TGCGCGAAGACTGCG elbB 548148 - 548801 + | isoprenoid biosynthesis protein with amidotransferase-like domain mtgA 548798 - 549523 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 556 549657 - 549702 + T 71 -6.8 -4.11363 | opp_overlap 549666, overlap 549697 GGTATCGATGTGGTA GATAAAAAACGGGCTTGGCG GTTTAG CGCTAAGCCCGTGATAAATC TTATTTAATCTTCTT TERM 557 549693 - 549666 - T 100 -12.7 -5.36441 | opp_overlap 549657 GTGGTAGATAAAAAA CGGGCTTGGCG GTTTAG CGCTAAGCCCG TGATAAATCTTATTT YpsIP31758_0472 550305 - 549730 - | hypothetical protein TERM 558 550163 - 550205 + g 85 -7.6 -4.82901 | CTGGCTTCCAGTGTG CCGTCATCTACCTGCGTACC GAT GGTACGTGGATCCGTGGCGG TTTTTGTGGCAACCG gmhA2 550906 - 550316 - | DnaA initiator-associating protein DiaA TERM 559 551088 - 551102 + r 77 -5 -5.00642 | opp_overlap 551088 TAAATGCTGTTCAAA TTGGTT CCA GACCAA TTTTTCTCTCGCTTG YpsIP31758_0474 551530 - 551177 - | hypothetical protein TERM 560 551302 - 551265 - G 73 -7.9 -4.07885 | gap 3, opp_overlap 551258 551290 551296, overlap 551293 GATGTTGTGGCAAAA CTGGC-GCCGC-GTTGTG CCAGC CA-AACAGCGGCGGCCAG ATGTAGCCGTTGTTG TERM 561 551450 - 551416 - G 79 -10 -3.82824 | CATCACGCATAATAA GGTCAATTTCGCCTCC ACG GAAGGCAACATTGGCC GCTTGAAAAACGAGA TERM 562 551473 - 551461 - G 71 -4.8 -4.56597 | opp_overlap 551466, overlap 551464 551466 TGGCCGCTTGAAAAA CGAG ACCTG CTCG CTCCAGATGGCGACG YpsIP31758_0475 553698 - 551629 - | putative LppC lipoprotein TERM 563 553249 - 553259 + gH 77 -8.2 -4.03995 | opp_overlap 553245 553244, overlap 553247 GGCAAGAATATCAGC CGCC GCT GGCG TATTTTTCTGCGCGA TERM 564 553600 - 553618 + gH 80 -2.5 -5.42259 | gap 1, opp_overlap 553600, overlap 553602 GAACGTTGAGGAAAG CAT-ACTG TATC CAGTGATG TTTTTTTCAAGATGC TERM 565 554467 - 554451 - gR 89 -7.2 -5.02074 | overlap 554452 TTACCGCTGAAAAAA GCCGCC GCATT AGCGGC AGAAATTCATGGAGT TERM 566 554469 - 554452 - gR 82 -10.5 -3.60762 | overlap 554451 TACCGCTGAAAAAAG CCGCCGC ATTA GCGGCAG AAATTCATGGAGTCA YpsIP31758_0476 553665 - 554564 + | putative tetrapyrrole methylase TERM 567 554969 - 554994 + Tr 83 -11.9 -2.73124 | opp_overlap 554974 554975, overlap 554975 ACTCCACTCATTCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGGAGGATAGGG TERM 568 554989 - 554974 - TR 70 -6 -4.40358 | opp_overlap 554969 554975, overlap 554975 ACTCATTCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGGAGGA TERM 569 554975 - 554988 + Tr 100 -9.5 -4.98531 | opp_overlap 554974 554975, overlap 554969 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGGAGG TERM 570 554988 - 554975 - TR 72 -9.5 -3.23733 | opp_overlap 554975 554969, overlap 554974 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGGAGG TERM 571 555082 - 555107 + Tr 83 -11.9 -2.80796 | opp_overlap 555087 555088, overlap 555088 ACGCCACTCATGCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGCATGATAGGG TERM 572 555102 - 555087 - TR 70 -6 -4.40358 | opp_overlap 555082 555088, overlap 555088 ACTCATGCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGCATGA TERM 573 555101 - 555088 - TR 72 -9.5 -3.23733 | opp_overlap 555088 555082, overlap 555087 CTCATGCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCATG TERM 574 555088 - 555101 + Tr 100 -9.5 -5.00138 | opp_overlap 555087 555088, overlap 555082 CTCATGCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCATG YpsIP31758_0477 555866 - 555162 - | YhhW family protein YpsIP31758_0478 556128 - 557021 + | LysR family substrate binding transcriptional regulator TERM 575 557081 - 557106 + T 75 -8.9 -3.6284 | AACGTTTGCTTGCTA CGCCCTTGGCC TTGG GGGAAAGGGCG TTTAGCGTGCTAATT YpsIP31758_0479 558138 - 557152 - | glutathione S-transferase domain-containing protein TERM 576 558180 - 558158 - R 100 -8.5 -5.40072 | TCCCCCTTAAAAAAA TACCCTACC GGATG GATAGGGTA TCGCTAATATTAACT YpsIP31758_0480 558619 - 558224 - | DoxX family protein YpsIP31758_0481 559207 - 558923 - | hypothetical protein TERM 577 559122 - 559177 + g 77 -6.3 -4.63527 | opp_overlap 559122, overlap 559125 ACTTCAACCCAACGA GCAGCATTG-TCCGCGAGATCCAGACG TTGT TG-CTGGATCTCACGCAGTAATGCTTC TTTTTCCAATGCTAG TERM 578 559125 - 559174 + g 74 -6.6 -4.42748 | opp_overlap 559122, overlap 559122 TCAACCCAACGAGCA GCATTG-TCCGCGAGATCCAGACG TTGT TG-CTGGATCTCACGCAGTAATGC TTCTTTTTCCAATGC YpsIP31758_0482 559599 - 559204 - | hypothetical protein YpsIP31758_0483 559907 - 559602 - | hypothetical protein YpsIP31758_0484 560058 - 559912 - | hypothetical protein YpsIP31758_0485 560442 - 560062 - | hypothetical protein TERM 579 560636 - 560663 + r 91 -12 -3.4759 | overlap 560637 TGAGAGGAACGAGTT TGATACGGGGAG TCGA CTCCCCGTAGCG TTGATTATCCTAAGT TERM 580 560637 - 560662 + r 93 -13.3 -2.68072 | overlap 560636 GAGAGGAACGAGTTT GATACGGGGAG TCGA CTCCCCGTAGC GTTGATTATCCTAAG YpsIP31758_0486 561057 - 560668 - | hypothetical protein YpsIP31758_0487 561752 - 561054 - | hypothetical protein YpsIP31758_0488 562611 - 562030 - | hypothetical protein YpsIP31758_0489 563606 - 562812 - | DNA-binding transcriptional repressor ExuR TERM 581 563785 - 563818 + r 79 -11.1 -3.2115 | opp_overlap 563787 563792, overlap 563787 563792 GCGGATAACAGGAGA GATGAAAGCCCGATA AATT TACCGGGCTTTCATG TTAGTAGGTCATTTA TERM 582 563787 - 563816 + r 100 -13.7 -3.16264 | opp_overlap 563787 563792, overlap 563785 563792 GGATAACAGGAGAGA TGAAAGCCCGATA AATT TACCGGGCTTTCA TGTTAGTAGGTCATT TERM 583 563816 - 563787 - R 100 -15.9 -3.02381 | opp_overlap 563787 563785 563792, overlap 563792 GGATAACAGGAGAGA TGAAAGCCCGATA AATT TACCGGGCTTTCA TGTTAGTAGGTCATT TERM 584 563792 - 563811 + r 74 -7.8 -3.95022 | opp_overlap 563792 563787, overlap 563787 563785 ACAGGAGAGATGAAA GCCCGATA AATT TACCGGGC TTTCATGTTAGTAGG TERM 585 563811 - 563792 - R 84 -10 -3.90358 | opp_overlap 563787 563785 563792, overlap 563787 ACAGGAGAGATGAAA GCCCGATA AATT TACCGGGC TTTCATGTTAGTAGG YpsIP31758_0490 565170 - 563869 - | putative hexuronate MFS transporter ExuT uxaC 565918 - 567327 + | glucuronate isomerase TERM 586 568513 - 568484 - g 71 -2.9 -5.00616 | gap 1 GCTTTGTGGAAAAAA CCATTA-CGGAAGA GAT TGTTCCGGTATTGG ATCTGCCCGAAGACG uxaB 567526 - 568977 + | altronate oxidoreductase uxaA 568988 - 570478 + | altronate dehydratase YpsIP31758_0494 570631 - 571161 + | hypothetical protein TERM 587 571203 - 571178 - T 100 -9.8 -5.88565 | TTGATAACAAAAAAA TGCCAGTCAG ACTTAA CTAACTGGCA TTACGCGTAGGTAAA sstT 572484 - 571228 - | serine/threonine transporter SstT TERM 588 571575 - 571589 + g 70 -10 -3.17051 | overlap 571573 GCACCGTGATGGTGA TGGCTG CAC CAGCCA TATTGATGGTGGCAC TERM 589 572663 - 572688 + H 74 -6.9 -4.30719 | gap 1 TGACTTTGGGTATAG CGCTCAAGCC GGAACGA GGC-TGAGCG TTTATTGTGCCCAGA TERM 590 572725 - 572707 - H 100 -16 -4.37092 | opp_overlap 572707 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 591 572707 - 572725 + H 100 -16 -3.07307 | opp_overlap 572707 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_0496 572787 - 573296 + | IS1541, transposase TERM 592 573370 - 573402 + T 100 -11.3 -4.16284 | opp_overlap 573377, overlap 573374 573376 573377 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTGTTCACACCTGT TERM 593 573374 - 573398 + T 100 -9.9 -4.67607 | opp_overlap 573377, overlap 573370 573376 573377 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGTTCACAC TERM 594 573376 - 573396 + T 100 -12.5 -3.94772 | opp_overlap 573377, overlap 573374 573370 573377 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGTTCAC TERM 595 573395 - 573377 - T 100 -16 -4.8048 | opp_overlap 573376 573374 573370 573377 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTTCA TERM 596 573377 - 573395 + T 100 -16 -2.95779 | opp_overlap 573377, overlap 573376 573374 573370 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTTCA YpsIP31758_0497 574725 - 573730 - | Gfo/Idh/MocA family oxidoreductase YpsIP31758_0498 575437 - 574928 - | hypothetical protein TERM 597 575666 - 575694 + r 100 -11.7 -4.431 | GGATTAGCGGTCTGT CGATACCTGCACC ATA GGCACAGGTATCG TTTTATCAATGGATA YpsIP31758_0499 578724 - 575710 - | putative autotransporter protein TERM 598 578198 - 578216 + g 74 -3.8 -4.8543 | opp_overlap 578198 GAAACATAGAGAATA CCATTATC ACC GACAGTGG TTTTTGTGGCACTTC TERM 599 578443 - 578433 - G 71 -4 -4.74103 | opp_overlap 578433 CTTTTAACGTAAAAA TACT GCC AGTA TTAACGGCCGTATGC TERM 600 579094 - 579112 + H 100 -14.6 -3.54459 | opp_overlap 579108 579109 CTTGCGGTGTGGGTT CGCGCTTG GCA CAAGCGCG TTTAAAACGCATTAA YpsIP31758_0500 579199 - 580386 + | methyltransferase family protein TERM 601 580395 - 580426 + T 100 -15.2 -3.85879 | overlap 580421 TTTCTAATCGGTATT TCACAGGGTGGGGT TTTC GCCACACCCTGTGA TTATTCTCAGTTCTA fadH 582523 - 580502 - | 2,4-dienoyl-coa reductase TERM 602 582565 - 582606 + r 82 -3 -5.4756 | gap 2 ACCATTATTGTTATA TCTCCGCCG-CC-CTTACTG AATC CAGCAAGTGGTCGGATGAGA TTTTTTATTCAAATT YpsIP31758_0502 583305 - 582736 - | acid-resistance membrane protein YpsIP31758_0503 585195 - 583696 - | putative protein kinase TERM 603 584812 - 584826 + g 71 -6.4 -4.14627 | CTGATTATTGGCGCT GGCGAA CCA TTTGCC TTCTTTCTCTCGCCC TERM 604 585151 - 585165 + g 74 -6.4 -4.4648 | CTCGTCAACGTACTG GATGGT TTC GCCATC TTTTGTCGTACAGGT YpsIP31758_0504 586960 - 585227 - | hypothetical protein YpsIP31758_0505 588000 - 586960 - | putative tellurium resistance protein TERM 605 588098 - 588064 - R 100 -8.6 -5.626 | opp_overlap 588067, overlap 588067 GATGCGACAAAAAAA TAAGGCAAAGCGCC GTGAATG GGGGCTTTGCCTTT AACTTACAGTACCAA TERM 606 588067 - 588095 + r 86 -10.3 -3.76125 | opp_overlap 588064 588067 GCGACAAAAAAATAA GGCAAAGCGCC GTGAATG GGGGCTTTGCC TTTAACTTACAGTAC TERM 607 588095 - 588067 - R 100 -10.3 -4.89054 | opp_overlap 588067, overlap 588064 GCGACAAAAAAATAA GGCAAAGCGCC GTGAATG GGGGCTTTGCC TTTAACTTACAGTAC YpsIP31758_0506 588740 - 588102 - | putative tellurium resistance protein YpsIP31758_0507 589383 - 588742 - | tellurium resistance protein YpsIP31758_0508 590054 - 589416 - | putative tellurium resistance protein TERM 608 590947 - 590957 + G 73 -2.4 -5.04987 | overlap 590927 590953 ATGTGCGCTTATCTG CGCC CTC GGCC TTTTTTAGCCGTATT TERM 609 591206 - 591194 - g 74 -9.1 -3.69323 | overlap 591196 GCAGCAGGATTTAAA CAGCG GCA CGCTG GCGCTAAACGTCGTG YpsIP31758_0509 590769 - 592457 + | ShlB/FhaC/HecB family haemolysin secretion/activation protein TERM 610 593774 - 593747 - g 76 -9 -3.83205 | overlap 593748 ACCCTTGATATTAAA GCCCGTGGGCAG CTAA CCGCCCAAGGGA AAAATATTAGCGGCA TERM 611 593773 - 593748 - g 80 -12.5 -2.89602 | overlap 593747 CCCTTGATATTAAAG CCCGTGGGCAG CTAA CCGCCCAAGGG AAAAATATTAGCGGC TERM 612 594184 - 594223 + G 82 -11.6 -3.39895 | gap 2, opp_overlap 594183 594182 GAGTGATGGCAAACT GGC-T-CCGCGTGGTGAT CTCAAT GTCACCACGCGGCATGCC TTGATTGCTCAAGGG TERM 613 596423 - 596386 - g 72 -11.3 -2.74144 | opp_overlap 596386, overlap 596385 CGCGCACGGGCAAAG CCTTGCCGCCGGT GCCATGACGTTA ACCGGCGGCAGGG TTGATCTCACCGGCA TERM 614 596386 - 596423 + G 88 -13.5 -3.25823 | opp_overlap 596386 596385 CGCGCACGGGCAAAG CCTTGCCGCCGGT GCCATGACGTTA ACCGGCGGCAGGG TTGATCTCACCGGCA TERM 615 597037 - 597022 - g 70 -2.4 -4.91712 | overlap 597024 597032 TGCAACGGATAAAAA CGGCAC ATTA GCGCTG TTGGCACCGGTAATT TERM 616 597337 - 597322 - g 80 -8.2 -4.4009 | CTGGACGGCAGAAAA CCCCGA TATT CCGGGG GGGCGTTATACTCAA TERM 617 599367 - 599351 - g 90 -7.9 -5.14965 | overlap 599352 599353 ACCGGGACTAAAAAA GGGCTGG TCT CCAGCAC CACCGCCCGCAGCGA TERM 618 600306 - 600282 - g 75 -3.5 -5.1615 | gap 1, overlap 600283 600297 CCAATAGGCAAAAAA CCGACGGCAG TAACAG CAGCCGT-GG CGGTAGCGTTGGCGT YpsIP31758_0510 592502 - 602554 + | adhesin/hemagglutinin TERM 619 602913 - 602930 + G 100 -10.5 -5.22312 | opp_overlap 602912 602913 AGTTCGATGATGAAT CCCGGCC AACT GGCTGGG TTTTTTGCTCTAAGT YpsIP31758_0511 602904 - 603032 + | hypothetical protein YpsIP31758_0512 603192 - 603509 + | hypothetical protein YpsIP31758_0513 603514 - 603762 + | hypothetical protein TERM 620 604405 - 604389 - g 90 -7.9 -5.14965 | overlap 604390 604391 ACCGGGACTAAAAAA GGGCTGG TCT CCAGCAC CACCGCCCGCAGCGA TERM 621 606718 - 606736 + G 74 -9.5 -3.55444 | opp_overlap 606717 CACTGAGTACATTAG CCGCCGG GCTGG CCGGTGG TTTGACAGGTGACAG YpsIP31758_0514 603786 - 607592 + | hypothetical protein TERM 622 607999 - 608026 + G 78 -9.3 -3.98683 | GACATTTACAGATGT GTCAGGGAATT ATGATA AATTTCCTGAC TTTGGTTGCTATGAT YpsIP31758_0515 607589 - 608065 + | hypothetical protein TERM 623 608074 - 608093 + F 95 -7.1 -5.58074 | CAGATAGTCAAACGT TCCCGTC TTTATT GGCGGGA TTTTTTTAATGGTTG YpsIP31758_0516 608102 - 608233 + | hypothetical protein YpsIP31758_0517 608410 - 609021 + | hypothetical protein TERM 624 609365 - 609337 - f 70 -3.8 -4.75174 | overlap 609338 609340 GATTTAATCTAAAAA TGAGATCCCAGC TCTAC ACTGGGATCTGC CAAAGGGCTGGTCTC TERM 625 609362 - 609340 - f 76 -9.9 -3.28592 | overlap 609338 609337 TTAATCTAAAAATGA GATCCCAGC TCTAC ACTGGGATC TGCCAAAGGGCTGGT TERM 626 610028 - 610018 - g 71 -4.6 -4.55023 | GTCAATACTACAAAA GCCC AAT GGAC AGAAATAAATCGGGC YpsIP31758_0518 609436 - 610098 + | hypothetical protein YpsIP31758_0519 610759 - 612681 + | hypothetical protein YpsIP31758_0520 612687 - 613076 + | hypothetical protein TERM 627 613281 - 613259 - f 74 -9.2 -3.28146 | AAAAACTAGTATTAA GATCCCAG CTTCACT CTGGGATC ACCGGTAGCGATATT TERM 628 613339 - 613321 - f 75 -8.8 -3.61178 | opp_overlap 613321 GGCAGCCAGCTTAAA GCCGGG GGCGATA CCCGGC TTGATGCGGCGCGTG YpsIP31758_0521 613357 - 614595 + | hypothetical protein YpsIP31758_0522 617131 - 614846 - | putative autotransporter protein YpsIP31758_0523 618186 - 617191 - | hypothetical protein YpsIP31758_0524 619667 - 618288 - | hypothetical protein TERM 629 619029 - 619041 + g 80 -4.1 -5.24129 | ATCAACGAAGTAGCC CAGTG ACG CATTG TTTTTTGTCGACCAA TERM 630 620040 - 620056 + G 72 -10.9 -2.52023 | opp_overlap 620038 620037, overlap 620039 620037 620042 AATATATCCAAACGG CATGCAG GTT CTGCATG ATATTAATCTGGATA YpsIP31758_0525 619993 - 621108 + | ABC transporter, ATP-binding protein TERM 631 621907 - 621940 + G 75 -8.1 -4.26792 | overlap 621909 621937 ACAGCTACAGCCAGT CACGCTGTCCGCG GGTGACAG CGCAGACAGCGTA TTTTACGGTTTCTAT TERM 632 621909 - 621938 + G 81 -10.7 -3.72407 | overlap 621907 621937 AGCTACAGCCAGTCA CGCTGTCCGCG GGTGACAG CGCAGACAGCG TATTTTACGGTTTCT YpsIP31758_0526 621191 - 624544 + | hypothetical protein TERM 633 624617 - 624601 - f 72 -6.5 -4.36914 | opp_overlap 624601 TGTGGCGCTACAAAA GCCTGAG TGG CTCATGC TATAGTAAATTCCTT YpsIP31758_0527 624653 - 625639 + | LacI family sugar-binding transcriptional regulator YpsIP31758_0528 625716 - 626960 + | sugar ABC transporter, periplasmic sugar-binding protein YpsIP31758_0529 627014 - 627895 + | sugar ABC transporter, permease protein TERM 634 628413 - 628426 + G 79 -2.3 -5.42259 | overlap 628414 628424 CAGGATCGATGGCGC AGGTG AATT CACCA TTTTTTTCAAGGTGG YpsIP31758_0530 627895 - 628713 + | sugar ABC transporter, permease protein TERM 635 629070 - 629086 + G 82 -12.3 -3.10164 | opp_overlap 629060 629057 ATTGATACCCGCTTC GTTGCCG AAG CGGCAAC TTGCCTGCTGGCTCG YpsIP31758_0531 628710 - 629225 + | hypothetical protein TERM 636 629996 - 630009 + G 71 -4.5 -4.64766 | overlap 629997 GAGGCAGGCGTTGGC TCGGT GATG ACCGG TTTTTGCGATCTCGG TERM 637 630597 - 630575 - g 70 -9.9 -3.18383 | gap 1 ATGTCGATCTATCAA TCCCTCTGCG CTAT CGCAG-GGGA GGTTAAGGTGATTAC YpsIP31758_0532 629276 - 631459 + | putative periplasmic beta-glucosidase YpsIP31758_0533 632884 - 631523 - | outer membrane efflux protein TERM 638 632578 - 632595 + g 73 -7 -4.18697 | opp_overlap 632574 632572 632578 AGGCCAAAGCAGGAA CAACCG CGCTCC CGGTTG TTTTCAGATCCTTTT YpsIP31758_0534 634955 - 633054 - | fusaric acid resistance domain-containing protein YpsIP31758_0535 635988 - 634939 - | multidrug resistance protein MdtN YpsIP31758_0536 636324 - 635998 - | hypothetical protein TERM 639 636238 - 636267 + g 74 -6.3 -4.39287 | opp_overlap 636238 CGCTATAGCCGATAA CAGGATCAATGGC CCAC GCCATAGCGCCTG TTTTGCTGTCGTTAA YpsIP31758_0537 636530 - 636330 - | hypothetical protein YpsIP31758_0538 637317 - 638528 + | putative aspartate aminotransferase TERM 640 638571 - 638581 + G 76 -2.4 -5.25699 | opp_overlap 638562 638561 AAATATGGCATTACT GCCG ATG CTGC TTTTTATTGTGTCGT YpsIP31758_0539 638521 - 639972 + | Na+/H+ antiporter family protein YpsIP31758_0540 639985 - 640422 + | hypothetical protein TERM 641 640767 - 640757 - g 71 -4 -4.7497 | CTTATCCATGAAAAA TCTT GGG AAGA ACGTGATTTTATCAT YpsIP31758_0541 640556 - 641188 + | hypothetical protein YpsIP31758_0542 641199 - 641579 + | putative endoribonuclease L-PSP TERM 642 641900 - 641916 + G 71 -2.9 -4.91511 | CCCGAGACGATGTAC CCCAGTG TGC CATTCGG TTTTTCTCATGCGGT TERM 643 642137 - 642162 + G 78 -6.1 -4.82901 | TCACCGGCGAATTTG GCCGCAATTTG CGCA CAAATCGGGGC TTTTTATGAGGGCGC YpsIP31758_0543 641864 - 642268 + | L-PSP family endoribonuclease YpsIP31758_0544 642785 - 642483 - | hypothetical protein YpsIP31758_0545 643647 - 643045 - | hypothetical protein YpsIP31758_0546 643712 - 643837 + | hypothetical protein YpsIP31758_0547 643923 - 644879 + | LysR family substrate binding transcriptional regulator YpsIP31758_0548 645306 - 645863 + | Fic family protein TERM 644 645903 - 645918 + F 74 -4 -5.00616 | TGTGCCAGATTTTGT TTGAGT TGCT GCTCAA TTTTTTGCACAGAAA YpsIP31758_0549 646198 - 647376 + | HNH endonuclease domain-containing protein YpsIP31758_0550 647385 - 647915 + | hypothetical protein TERM 645 647993 - 647971 - g 76 -10 -3.63744 | opp_overlap 647974, overlap 647969 CGTGTTGGGAAAATA TTAGGGTATA TGA TACACCCTAA ATTCACGGGACATGT YpsIP31758_0551 647929 - 648402 + | hypothetical protein YpsIP31758_0552 648718 - 649056 + | hypothetical protein TERM 646 649264 - 649294 + T 100 -9.8 -4.93877 | opp_overlap 649267, overlap 649267 TATCCCAGAAATAAC AAAGGAGTTACGCT ATT AACGTAACTCCTTG TTTTATTTGGTGGCC TERM 647 649291 - 649267 - T 100 -13.7 -4.63048 | opp_overlap 649267 649264 CCCAGAAATAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 648 649267 - 649291 + T 100 -11.5 -4.56436 | opp_overlap 649267, overlap 649264 CCCAGAAATAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 649 649551 - 649527 - T 100 -8.6 -5.90981 | opp_overlap 649517 649527 TTATAGGAAAAAAAA TCCCGACACA AATAA TATGCCGGGA TTTTTATTACTTCAC TERM 650 649527 - 649551 + T 78 -4.2 -5.1963 | opp_overlap 649527, overlap 649517 TTATAGGAAAAAAAA TCCCGACACA AATAA TATGCCGGGA TTTTTATTACTTCAC rpoD 651412 - 649574 - | RNA polymerase sigma factor RpoD TERM 651 650677 - 650702 + g 77 -3.1 -5.24551 | overlap 650678 GCTTCAGAATTTCAG CGGCAGCATTC GCGT GATTGCGGCCA TTTTTCTTGATTTCC TERM 652 651522 - 651541 + r 81 -9.3 -3.87869 | GCTATAGCGGCATAT TGTGGGG AGTTGC CCCCACA TTTATCGGCAATTAA dnaG 653318 - 651570 - | DNA primase TERM 653 651728 - 651718 - G 74 -6.8 -4.37092 | overlap 651720 AGCGTGTCGACAAAA GTCG GTT CGAC CATATCCTCTACAAT TERM 654 653380 - 653353 - R 100 -13.4 -3.94823 | opp_overlap 653352 653353 CATAAACGAGAACAA GCCGCGCATTCC TTTC GGAAAGCACGGC CTTCGTATGCAACTA TERM 655 653353 - 653380 + r 76 -11.2 -2.55668 | opp_overlap 653353, overlap 653352 CATAAACGAGAACAA GCCGCGCATTCC TTTC GGAAAGCACGGC CTTCGTATGCAACTA rpsU 653669 - 653454 - | 30S ribosomal protein S21 TERM 656 655050 - 655064 + G 71 -9.2 -3.551 | TTGAGTGTGTCGGTG CGGCCG CGG TGGCCG TTATCTGAGTTACCA gcp 654075 - 655088 + | O-sialoglycoprotein endopeptidase TERM 657 655105 - 655130 + T 100 -12.6 -4.36262 | overlap 655097 CAGAATGGCTGAGCG TGGCTGCGGC TGCGTT GCCGCAGTCA TTTTGATATGGGTGT TERM 658 655163 - 655182 + T 76 -10.7 -2.72661 | overlap 655152 AATGGCTGAGCGTGG CTGCGGC TGTGTT GCCGCAG TCATTCAAAATACTC TERM 659 655240 - 655298 + T 79 -11.1 -3.06696 | gap 1, overlap 655282 655289 ATTCCTTTGCGCCTT GCCTCGCTCATGCTCAGTCATTCTGATA GGGG TGTC-GAATGGCTGGGCGTGGCTGTGGC TGTGTTGCCGCAGCC TERM 660 655282 - 655321 + T 100 -12.1 -4.07885 | overlap 655240 655289 AGGGGTGTCGAATGG CTGGGCGTGGCTGTGGC TGTGTT GCCGCAGCCATTCTCGG TTTTGGGGAAAACTA TERM 661 655289 - 655314 + T 100 -12.6 -3.52113 | overlap 655240 655282 TCGAATGGCTGGGCG TGGCTGTGGC TGTGTT GCCGCAGCCA TTCTCGGTTTTGGGG YpsIP31758_0557 655984 - 655334 - | putative glycerol-3-phosphate acyltransferase PlsY folB 656092 - 656451 + | bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase TERM 662 656661 - 656683 + F 100 -8.4 -5.77632 | opp_overlap 656661 AAATTCTAAATAGAA CGGCACTGTT TTC AGCATTGCCG TTTTTTTGTGGTTTT uppP 656725 - 657543 + | undecaprenyl pyrophosphate phosphatase TERM 663 657760 - 657742 - T 75 -8.8 -3.58343 | opp_overlap 657722 GGCAGGAGTCTGAAA CCCCTTGT TTT ACAGGGGG AAACGAACGGGGAGT cca 659017 - 657779 - | multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase TERM 664 658609 - 658587 - G 100 -12.7 -4.21275 | overlap 658598 CCAAGGTAGGCAAAA CGGGCGGCA AAGCG TGCCACCCG CAGAACGCGCAATGG YpsIP31758_0561 659815 - 659195 - | putative signal transduction protein TERM 665 660901 - 660917 + G 73 -5.1 -4.64657 | overlap 660890 660903 CGCTTTGGCTATGGT TCGCCAA TCG TTGGCTA TTTTTGGCGGTTTGG TERM 666 660903 - 660915 + G 70 -7.7 -3.9318 | overlap 660890 660901 CTTTGGCTATGGTTC GCCAA TCG TTGGC TATTTTTGGCGGTTT YpsIP31758_0562 660119 - 661426 + | adenylate cyclase TERM 667 664066 - 664026 - g 81 -11.2 -3.73224 | gap 1 CTATTCGCCAGCAAA TTCTCTGCCGCCACCGCGA AGAT CCGCAGTTGCAGCAG-GAA GTCCGCGAAATGCGG glnE 661598 - 664453 + | bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase TERM 668 664778 - 664791 + G 70 -9.5 -3.18681 | ATATTGCCTCCCTTG GCGCG GTTG CGCGC TTAGTCGGGTTGACC TERM 669 664925 - 664906 - g 70 -7.9 -3.80573 | CCGACCATTACCAAA TTACGGG TACTTT CCCGTAA CCAGCAGTTAATCCG hldE 664588 - 666018 + | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase TERM 670 666040 - 666023 - f 86 -12.7 -2.52464 | GCCGCGGCTAAGTCA GCGCCAG AGCG CTGGCGC ATAAGGATGTGGCAG TERM 671 666112 - 666130 + G 75 -5.2 -4.8048 | overlap 666113 GGGTTGTTATCCACT TCCCTGTT GGG GACGGGGG TTTTTGCTGTGCCAG YpsIP31758_0565 666055 - 667305 + | inner membrane protein YjeH TERM 672 667425 - 667451 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 667414, overlap 667420 667426 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 673 667426 - 667452 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 667414, overlap 667420 667425 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YpsIP31758_0566 667911 - 667630 - | hypothetical protein ribB 668481 - 669134 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase YpsIP31758_0568 669260 - 669373 + | hypothetical protein YpsIP31758_0569 669401 - 669538 + | hypothetical protein YpsIP31758_0570 669576 - 670358 + | hypothetical protein TERM 674 670727 - 670763 + T 74 -10.3 -2.57564 | opp_overlap 670736, overlap 670726 670731 670735 GGCAATGACTTTGGG TATGGTAAAGGAAGGTG CAT TGCCTTCCCTTACTATA ATTATCCCAAAATAA YpsIP31758_0571 671925 - 670765 - | putative glutathionylspermidine synthase TERM 675 671705 - 671730 + g 71 -4.7 -4.58283 | overlap 671703 GGGATACGGCACTTG GTCAGTAACTG ATCG CTGTTAATGAC TTTTTCAACCACTTG TERM 676 671939 - 671960 + r 73 -7.3 -4.23723 | gap 1 ATTAATCAGCCTTAG CCACC-CATG CTA CGTGTGGTGG TTTTGGATGATGTTG YpsIP31758_0572 672621 - 671935 - | hypothetical protein TERM 677 672889 - 672855 - R 100 -10.6 -5.09895 | overlap 672859 GAGGGAGGCAAAAAA TAAACCGGGCGCAGCC AAT GACTGTGCCCGGTGAA GCCAAACCGCTGACG TERM 678 672885 - 672859 - R 100 -15.8 -5.0666 | overlap 672855 GAGGCAAAAAATAAA CCGGGCGCAGCC AAT GACTGTGCCCGG TGAAGCCAAACCGCT YpsIP31758_0573 674316 - 672922 - | outer membrane channel protein TERM 679 673701 - 673686 - G 71 -6.8 -4.30987 | opp_overlap 673699 ATTCGGGATAATAAA CACCAG TAAT CTGGCG CAAGCTCTCTAGTGC YpsIP31758_0574 674712 - 675344 + | ADP-ribose pyrophosphatase NudF YpsIP31758_0575 675378 - 675803 + | hypothetical protein YpsIP31758_0576 675884 - 676711 + | cyclic 3',5'-adenosine monophosphate phosphodiesterase yqiA 676711 - 677292 + | esterase YqiA TERM 680 678603 - 678567 - g 86 -8 -5.00616 | opp_overlap 678567 678566, overlap 678571 GTGGTGCGTAAAAAA CTGACCAG-TGGCCCGGC ACT GCCTGGCAAACTGG-CAG ATTGTACTTCGCAGG parE 677394 - 679289 + | DNA topoisomerase IV subunit B YpsIP31758_0579 679293 - 680204 + | LysR family substrate binding transcriptional regulator TERM 681 680255 - 680229 - T 100 -17.3 -4.4715 | GGGTAACGTATAAAA CGGCCCTCCCC AGAGA GAGGAGGGCCG AACCGCTTAGCTGTT YpsIP31758_0580 680846 - 680262 - | putative NADH-quinone reductase mdaB TERM 682 681375 - 681348 - g 83 -4.8 -5.22039 | gap 1, overlap 681349 GCTAAATTCAAAAAA TCAGCCCGT-ACC GTG GGTGACGTGCTGG GTAAATATCATCCGC TERM 683 681374 - 681349 - g 71 -8.3 -3.72139 | gap 1, overlap 681348 CTAAATTCAAAAAAT CAGCCCGT-ACC GTG GGTGACGTGCTG GGTAAATATCATCCG TERM 684 681939 - 681903 - g 86 -8 -5.00616 | gap 1, overlap 681906 681908 GCGGTGTGGAAAAAA GAAGATGGCAGCGCCGT GATC ACGGCGTTACCA-CATC AGGTTTCCGGCGCGA TERM 685 681936 - 681906 - g 83 -8.3 -4.61482 | gap 1, overlap 681903 681908 GTGTGGAAAAAAGAA GATGGCAGCGCCGT GATC ACGGCGTTACCA-C ATCAGGTTTCCGGCG TERM 686 681935 - 681908 - g 91 -12 -3.91465 | overlap 681906 681903 GTGGAAAAAAGAAGA TGGCAGCGCCGT GATC ACGGCGTTACCA CATCAGGTTTCCGGC TERM 687 682363 - 682378 + G 73 -4.6 -4.81249 | opp_overlap 682363 682362 AAGATGATCCTAAAC CGCTAC TGAT GCAGCG TTTTTCCATTTCGGA parC 681150 - 683423 + | DNA topoisomerase IV subunit A TERM 688 684147 - 684124 - g 75 -3.2 -5.04987 | AACAGGTGCAAAAAA GAAACATC TCTATTTG GATGTTCC CAGAAGGCACACGCA YpsIP31758_0582 683712 - 684443 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 689 684478 - 684488 + F 75 -8.2 -3.89695 | overlap 684471 CAGGCTATCGCGGCC CCGC GCG GCGG TTATATTTATCGCCA TERM 690 684755 - 684766 + G 93 -7.2 -5.47399 | TATTAGAATCTCGCC GCGG CCAA CCGC TTTTTTTAACCTTGC TERM 691 685225 - 685241 + G 72 -5.8 -4.36914 | opp_overlap 685224 685225 GTGCCGGAATATAAC CCTCCT GCTAA AGGGGG TTTTGTCGGGGACAC YpsIP31758_0583 684622 - 686046 + | repressor protein for FtsI TERM 692 686177 - 686189 + T 78 -9.1 -3.83409 | CGTATGTCTCGCTTG CCTGC TTC GCAGG TTTACTGATATGTAC YpsIP31758_0584 686872 - 686324 - | hypothetical protein TERM 693 687977 - 687953 - g 72 -5.8 -4.36914 | CTGCGGGTGAGAAAA TTACGGATAT TCAGG ATGTCCGTAA CACCGTTGTGATGCG YpsIP31758_0585 687316 - 689679 + | hypothetical protein dkgA 690528 - 689701 - | 2,5-diketo-D-gluconate reductase A TERM 694 690579 - 690604 + r 71 -3.4 -4.99645 | overlap 690573 GTATTAGCCCGTTGC TGATAACG TAAGTTTAGT CGTTATCA TTTTATTTATGACCT TERM 695 690869 - 690899 + r 74 -9.7 -3.1372 | opp_overlap 690866, overlap 690867 GTATAAACAGGAGGA CTGGCAGCATGAC ATGCG GTAATGCCGCCAG TGTTGGTACGAAATA YpsIP31758_0587 692110 - 690953 - | alcohol dehydrogenase, iron-containing TERM 696 692017 - 692034 + g 71 -6.9 -4.21631 | opp_overlap 692015 692017 CGTAGGTAATCAATA TCCGGGC ATCC GCCGGGA TTTCTTGAGTCAATT TERM 697 692209 - 692221 + H 80 -4.8 -5.17353 | CGTAACCACATCACT GTGC CTGGA GCAC TTTTTTCGTCAATAT YpsIP31758_0588 692508 - 693401 + | AraC family transcriptional regulator TERM 698 693446 - 693462 + T 75 -5.8 -4.65916 | opp_overlap 693446 AAGGCTTCATAGAAA CGGCGT ATTAG ATGCCG TTTTATTCACCTGGA YpsIP31758_0589 694155 - 693493 - | hypothetical protein metC1 695559 - 694348 - | cystathionine beta-lyase exbB 696416 - 697129 + | tonB-system energizer ExbB exbD 697133 - 697564 + | biopolymer transport protein ExbD TERM 699 697605 - 697565 - T 88 -9.7 -4.17316 | opp_overlap 697565 697566, overlap 697566 AGCGGCGCAAAATAA TTTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAAC TTTGGTTTTTGAGGA TERM 700 697565 - 697605 + T 93 -9.7 -4.32046 | opp_overlap 697565 697566, overlap 697566 AGCGGCGCAAAATAA TTTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAAC TTTGGTTTTTGAGGA TERM 701 697566 - 697604 + T 95 -13.2 -3.18505 | opp_overlap 697566 697565, overlap 697565 GCGGCGCAAAATAAT TTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAA CTTTGGTTTTTGAGG TERM 702 697604 - 697566 - T 95 -13.2 -3.09908 | opp_overlap 697565 697566, overlap 697565 GCGGCGCAAAATAAT TTTTTGCAAGCGCGGTTA CTG TTACCGCGCTTGCATCAA CTTTGGTTTTTGAGG YpsIP31758_0593 699217 - 697661 - | hypothetical protein TERM 703 699048 - 699062 + g 71 -6.4 -4.1899 | TGTTCAATAGCATCA GAGAGT TTA GCTCTC TTTTGGATAAAGTGA TERM 704 699193 - 699173 - G 85 -4.8 -5.45652 | overlap 699174 ATTTTTAATAAAAAA CTCATACT TCTCT AGTATGAA AGTTATCATTGTTTT YpsIP31758_0594 699814 - 699242 - | hypothetical protein YpsIP31758_0595 700268 - 699798 - | TadE-like family protein YpsIP31758_0596 701038 - 700268 - | putative lipoprotein YpsIP31758_0597 701855 - 701022 - | type II secretion system protein TERM 705 701231 - 701254 + g 88 -8.2 -4.67563 | opp_overlap 701230 701228 701231, overlap 701230 AGCCAAAACTAAGAC TGTATTGCAG TGTG CTGCAAAACA TTTTCATTTCTATTG YpsIP31758_0598 702727 - 701852 - | type II secretion system protein F domain YpsIP31758_0599 704010 - 702724 - | type II/IV secretion system protein YpsIP31758_0600 705149 - 704022 - | hypothetical protein TERM 706 704601 - 704630 + g 100 -4.3 -5.96894 | overlap 704603 GAGATCTTGCGAGCC TTGATTGCCTTGT AATA ACAAGGTAGGCGA TTTTTTTATTTGGGT YpsIP31758_0601 706766 - 705447 - | type II/III secretion system protein YpsIP31758_0602 707584 - 706763 - | hypothetical protein YpsIP31758_0603 708034 - 707636 - | type IV prepilin peptidase family protein TERM 707 708111 - 708083 - R 86 -10.3 -3.80858 | opp_overlap 708086, overlap 708086 708088 TAATATTAAGGTAAA GGATATGGCAGCC AAC GGCTGCCATATTT ATTGCTGATATTATG TERM 708 708086 - 708108 + r 100 -16.4 -4.28713 | opp_overlap 708083 708086 708088 TATTAAGGTAAAGGA TATGGCAGCC AAC GGCTGCCATA TTTATTGCTGATATT TERM 709 708108 - 708086 - R 100 -16.4 -2.98034 | opp_overlap 708086, overlap 708083 708088 TATTAAGGTAAAGGA TATGGCAGCC AAC GGCTGCCATA TTTATTGCTGATATT TERM 710 708106 - 708088 - R 100 -14.6 -3.03781 | opp_overlap 708086, overlap 708086 708083 TTAAGGTAAAGGATA TGGCAGCC AAC GGCTGCCA TATTTATTGCTGATA YpsIP31758_0604 708319 - 708122 - | hypothetical protein YpsIP31758_0605 709128 - 708541 - | hypothetical protein TERM 711 709056 - 709068 + g 71 -4.8 -4.56597 | CTGATCCATCGGGTC CGCT TAAGC AGCG TTTTTCCGGAGAGAA YpsIP31758_0606 709869 - 709705 - | hypothetical protein TERM 712 709827 - 709797 - G 100 -13.3 -5.16038 | opp_overlap 709792 709816 709826 AGAGAATAAAGAAAA GCCCTAAGACCGG AGAGA CCAGGCTTAGGGC TGAGTCTGCTTTACC TERM 713 710052 - 710038 - H 71 -5 -4.62069 | overlap 710039 710047 CTCTCAGGTTAAAAA CTTCAG AGA CTGAAA ACGTAGTTGCTCAGG TERM 714 711293 - 711314 + G 75 -10.1 -3.2963 | opp_overlap 711285, overlap 711294 TACATTAGCCGGTCA TGCAGTGGC GGGT GCCACTGCC TTATCCAACGGTGAT TERM 715 711294 - 711313 + G 84 -13.6 -2.57564 | opp_overlap 711285, overlap 711293 ACATTAGCCGGTCAT GCAGTGGC GGGT GCCACTGC CTTATCCAACGGTGA TERM 716 715032 - 714988 - g 79 -11.3 -3.55444 | opp_overlap 714974 CGGTCACCGGTCAAA CGGTCGCCTTTACCAGCACCC TCG GGACGCTGGGCAATGTGACCG AGCAGGCCAGTGGTG TERM 717 715638 - 715594 - g 86 -12.1 -3.55444 | opp_overlap 715580 CGGTCACCGGTCAAA CGGTCACCTTTACCAGCACCC TCG GAACGCTGGACAATGTGACCG AGCAGGCCAGTGGTG TERM 718 716547 - 716503 - g 79 -11.3 -3.55444 | opp_overlap 716489 CGGTTACCGGTCAAA CGGTCGCCTTTACCAGCACCC TCG GGACGCTGGGCAATGTGACCG AGCAGGCCAGTGGTG TERM 719 717153 - 717109 - g 79 -11.3 -3.55444 | opp_overlap 717095 CGGTTACCGGTCAAA CGGTCGCCTTTACCAGCACCC TCG GGACGCTGGGCAATGTGACCG AGCAGGCCAGTGGTG TERM 720 717456 - 717412 - g 79 -11.3 -3.55444 | opp_overlap 717398 CGGTCACCGGTCAAA CGGTCGCCTTTACCAGCACCC TCG GGACGCTGGGCAATGTGACCG AGCAGGCCAGTGGTG TERM 721 717759 - 717715 - g 79 -11.3 -3.55444 | opp_overlap 717701 CGGTTACCGGTCAAA CGGTCGCCTTTACCAGCACCC TCG GGACGCTGGGCAATGTGACCG AGCAGGCCAGTGGTG TERM 722 718062 - 718018 - g 79 -11.3 -3.55444 | opp_overlap 718004 CGGTCACCGGTCAAA CGGTCGCCTTTACCAGCACCC TCG GGACGCTGGGCAATGTGACCG AGCAGGCCAGTGGTG YpsIP31758_0608 710853 - 719240 + | putative invasin YpsIP31758_0609 719776 - 719627 - | hypothetical protein TERM 723 719787 - 719765 - G 73 -9.8 -3.39717 | opp_overlap 719767, overlap 719767 AGGCAGTAAGAGTAA GAGGGCCAGC AAG GCTGACCCTT TTATTAACCTTATTG TERM 724 719785 - 719767 - G 82 -12.4 -3.26531 | opp_overlap 719767, overlap 719765 GCAGTAAGAGTAAGA GGGCCAGC AAG GCTGACCC TTTTATTAACCTTAT TERM 725 719767 - 719785 + g 100 -10.2 -4.68705 | opp_overlap 719767 719765 GCAGTAAGAGTAAGA GGGCCAGC AAG GCTGACCC TTTTATTAACCTTAT YpsIP31758_0610 721232 - 719838 - | fibronectin type III domain-containing protein/ chitin binding domain-containing protein TERM 726 720976 - 720991 + g 100 -9 -4.7173 | AATTGCCCAGTTTCT TCGCCA GCAC TGGCGA TTTTTCCGTCTAATG YpsIP31758_0611 722712 - 721297 - | glycosy hydrolase family protein TERM 727 722259 - 722278 + g 73 -3.4 -5.0065 | overlap 722261 TTACTGTTTTTAATG CCCGAGGG ATCA CCGTCGAG TTTTCTTTATAACTA YpsIP31758_0612 723773 - 723612 - | hypothetical protein YpsIP31758_0613 723871 - 724401 + | fimbrial protein TERM 728 724434 - 724456 + F 91 -4.8 -5.71712 | opp_overlap 724434 TAAAATTTTAAAAAA GCATGTGG AGAAATG CCTCATGC TTTTTTTCTATGAAA TERM 729 724456 - 724434 - f 80 -4.8 -5.15117 | opp_overlap 724434 TAAAATTTTAAAAAA GCATGTGG AGAAATG CCTCATGC TTTTTTTCTATGAAA TERM 730 725824 - 725838 + G 77 -6.4 -4.63932 | ACTGAAGGCCCGGTA TTTGCC AGT GGCGAA TTTTCTTGGGGGGTC YpsIP31758_0614 724708 - 727188 + | fimbrial usher protein TERM 731 727426 - 727404 - g 74 -4.1 -4.93316 | GAACAACAGCAAAAA GTCACCACC CCGTT AGTGGCAAC GCCGCCGGTTCAACG papD 727206 - 727925 + | chaperone protein PapD TERM 732 728401 - 728389 - g 77 -6.3 -4.5448 | CAGGGACAAAAATAA CGATT GCT AATCG AGTCACGGTCCAACT YpsIP31758_0616 727950 - 729053 + | fimbrial family protein TERM 733 729236 - 729253 + T 74 -4.1 -4.98436 | TGTCAATAACCTCAA GCGAC CAATAAGT GTCGC TTTTTATGCTGTTAG YpsIP31758_0617 730344 - 729265 - | iron-enterobactin transporter periplasmic binding protein YpsIP31758_0618 730959 - 730828 - | hypothetical protein TERM 734 731215 - 731225 + G 91 -3.2 -5.72616 | ATGAATATTCTTTCC CTAC GCG GTGG TTTTTTTCTGTGGAT YpsIP31758_0619 731200 - 732195 + | hypothetical protein TERM 735 732261 - 732226 - T 100 -12 -4.39426 | opp_overlap 732223 732222 TACAGGGCCATAAAA TCGCCACAGTAATC TCATACTC GCTTACTGTGGCGA TCCCTCTTCTTCCGT YpsIP31758_0620 732865 - 732287 - | putative lipoprotein YpsIP31758_0621 732868 - 732990 + | hypothetical protein flhA2 735155 - 733059 - | flagellar biosynthesis protein FlhA TERM 736 734001 - 734015 + g 76 -10 -3.74178 | overlap 734009 TCGCACGCCACGTAG CCGTTG GTT CAACGG TTTACCCTTTGATTC flhB2 736275 - 735142 - | flagellar biosynthesis protein FlhB TERM 737 735603 - 735620 + g 71 -2.7 -4.94243 | TTTTATGCTCTTGTT TGACC TCCTGTTT GGTCA TTTTCATTTTTTTGG TERM 738 736168 - 736154 - G 71 -4.2 -4.82819 | GATAGCAGAATAAAA GAGGTC ACT AACCCC GCGGCCATGGTGACA TERM 739 736232 - 736242 + g 73 -4.6 -4.76312 | overlap 736231 GCTTTCGACAGCTTC CCCG TTG TGGG TTTTTCACTCTTCTC fliR2 737048 - 736275 - | flagellar biosynthetic protein FliR fliQ2 737327 - 737055 - | flagellar biosynthetic protein FliQ fliP1 738099 - 737329 - | flagellar biosynthesis protein FliP TERM 740 738053 - 738030 - G 73 -10.2 -3.10499 | overlap 737988 GAAGAGGGGAATACA GCAGCCCGCC CACC AGCAGGCCGC GGCTGATGATAGCTA fliN2 738509 - 738096 - | flagellar motor switch protein FliN TERM 741 738140 - 738152 + g 73 -3.4 -4.90266 | opp_overlap 738140 TATTGATGTTAATAA TACG CAGGC CGTA TTTTTCATTAATCAC TERM 742 738362 - 738376 + g 79 -3.5 -5.26918 | TGCGCTTTTGCTCAT CAGTC TTTGT GGCTG TTTTTTCTGGCGTAT YpsIP31758_0628 739380 - 738502 - | lateral flagellar export/assembly protein TERM 743 738978 - 738991 + g 74 -3.1 -5.1361 | AGAGATCGGTTATTT CAAGC CCAA GTTTG TTTTTTAGCCTTTCT YpsIP31758_0629 739894 - 740922 + | sigma-54 dependent transcriptional regulator fliE2 740939 - 741319 + | flagellar hook-basal body complex protein FliE fliF2 741329 - 742969 + | flagellar MS-ring protein fliG2 742941 - 743984 + | flagellar motor switch protein G TERM 744 744019 - 744003 - g 89 -5.8 -5.252 | gap 1, opp_overlap 744006, overlap 744005 GATGTCGATAAAAAA CACCCCG CGGT CGGGG-G CAGTGAAACTGCGGG TERM 745 744018 - 744005 - g 83 -9.5 -4.25873 | opp_overlap 744006, overlap 744003 TGTCGATAAAAAACA CCCCG CGGT CGGGG GCAGTGAAACTGCGG TERM 746 744667 - 744677 + G 73 -3.2 -5.00616 | CAATGCATTGGTGCG TTGC ACA GCAG TTTTTTGACGGAACC fliH1 743989 - 744705 + | flagellar assembly protein H TERM 747 744752 - 744772 + G 79 -11.8 -3.15544 | opp_overlap 744748 ATCGAAAACATTCAT CTGGCCCG AGTGG CGGGCCGG TTAGTGCGAGTGACG fliI2 744698 - 746038 + | flagellum-specific ATP synthase TERM 748 746185 - 746207 + G 73 -7.6 -3.97368 | opp_overlap 746182, overlap 746187 AAATGCATTAACCCT CTCTGGGGAG GCA TTCCCCGGTG TTTCTGCGTTACAGA fliJ2 746042 - 746479 + | flagellar export protein FliJ TERM 749 746511 - 746540 + T 100 -15.9 -5.4833 | opp_overlap 746511 CGGCCATAAAAAAAA TCCGTCATAGGGA ATAT TCTCTATGACGGA TTTTTTATTGGGTGG TERM 750 746540 - 746511 - T 100 -13.7 -5.93809 | opp_overlap 746511 CGGCCATAAAAAAAA TCCGTCATAGGGA ATAT TCTCTATGACGGA TTTTTTATTGGGTGG YpsIP31758_0636 747174 - 746749 - | putative flagellar protein FlgN YpsIP31758_0637 747447 - 747181 - | putative anti-sigma-28 factor, FlgM YpsIP31758_0638 748475 - 747657 - | flagellar basal body P-ring biosynthesis protein FlgA flgB1 748563 - 748928 + | flagellar basal-body rod protein FlgB flgC2 748931 - 749356 + | flagellar basal body rod protein FlgC flgD2 749359 - 750015 + | flagellar basal body rod modification protein TERM 751 750821 - 750835 + G 75 -11.4 -2.68223 | opp_overlap 750823, overlap 750820 750823 CCGGCACTTTCAATC CAGCGG GTG CCGCTG ATTATGATATCGATA flgE2 750070 - 751278 + | flagellar hook protein FlgE TERM 752 751539 - 751529 - g 73 -5.4 -4.57073 | TATTGCCGTTAAAAA TCAG GGG CTGA TCGCAGTACTCAGTG TERM 753 751825 - 751799 - g 78 -5.9 -4.73105 | gap 1 ACTCAGAAAAAATAA CCGCGGTTTACT GGTC AGTAA-CCGTGG CCCGGCGGCCCGTGA flgF1 751278 - 752009 + | flagellar basal body rod protein FlgF flgG1 752077 - 752862 + | flagellar basal body rod protein FlgG flgH2 752897 - 753562 + | flagellar basal body L-ring protein flgI1 753641 - 754759 + | flagellar basal body P-ring protein TERM 754 754792 - 754812 + G 83 -8.9 -4.42653 | opp_overlap 754791 754790 754793, overlap 754793 AGCCATTAATAAATC ATCCCCGGT GAT GCCGGGGAG TTTTGTCGGTGACCT TERM 755 754793 - 754811 + G 82 -12.4 -3.2511 | opp_overlap 754791 754790 754793, overlap 754792 GCCATTAATAAATCA TCCCCGGT GAT GCCGGGGA GTTTTGTCGGTGACC TERM 756 754811 - 754793 - g 79 -11.7 -3.12942 | opp_overlap 754793 754792, overlap 754791 754790 GCCATTAATAAATCA TCCCCGG TGATG CCGGGGA GTTTTGTCGGTGACC YpsIP31758_0647 754769 - 755062 + | peptidoglycan hydrolase TERM 757 755079 - 755094 + F 71 -9 -3.30124 | GCCTATTTAAGTTTG GCGAAC AATT GTTCGC TTATAGGGAGTAAAG flgK2 755165 - 756526 + | flagellar hook-associated protein FlgK flgL2 756558 - 757475 + | flagellar hook-associated protein FlgL YpsIP31758_0650 757487 - 758500 + | putative flagellar hook associated protein lafW TERM 758 758581 - 758614 + T 82 -6 -5.00616 | gap 1, overlap 758582 758583 TACCCGTTATTCTTC AAGCTG-CATGTGCG TTGAT CGCACATGTCAGCCG TTTTTTCAGCCCCAG TERM 759 758582 - 758613 + T 78 -9.5 -3.60048 | gap 1, overlap 758581 758583 ACCCGTTATTCTTCA AGCTG-CATGTGCG TTGAT CGCACATGTCAGCC GTTTTTTCAGCCCCA TERM 760 758583 - 758612 + T 91 -13 -2.75708 | gap 1, overlap 758582 758581 CCCGTTATTCTTCAA GCTG-CATGTGCG TTGAT CGCACATGTCAGC CGTTTTTTCAGCCCC YpsIP31758_0651 759110 - 758664 - | hypothetical protein YpsIP31758_0652 760137 - 759091 - | transcriptional regulator TERM 761 759814 - 759802 - G 83 -9.1 -4.43859 | GATAATTTCACAAAA GCTGG CAT CCAGC AGATAACCTATCTTG TERM 762 760252 - 760241 - H 73 -3.6 -5.00616 | opp_overlap 760245 GGTGGGTTCAAAAAA CAGG CAAA CCCG CGATTTGTTGTCCGC TERM 763 760607 - 760591 - H 72 -7.3 -3.92659 | opp_overlap 760591, overlap 760596 760600 TTCTTAAAATTTAAA GCAGATT AAT AACCTGC GTTATTAAAATACTA YpsIP31758_0653 760761 - 761954 + | flagellin TERM 764 762183 - 762158 - f 73 -9.7 -3.04715 | gap 1, overlap 762157 GACGCCCGCGAAAAG CGCGCTTGGGCA GGA TGCCC-ATCGCG GTGACTCGTCAGCCT TERM 765 762251 - 762276 + F 100 -16.2 -2.52543 | overlap 762238 GCGCAAGCCGCAGGT GCAGGAGGGC CGGCTA GCCCTCCTGC TCGGTTGAGGCGGCT TERM 766 762409 - 762428 + F 100 -8.6 -5.84432 | opp_overlap 762409 CCATTAATCAATCGA TACCGCTT CTTG GAGCGGTA TTTTTTTATCTTATA YpsIP31758_0654 762606 - 763790 + | flagellin TERM 767 763834 - 763858 + F 73 -5.8 -4.41844 | gap 1, opp_overlap 763836, overlap 763836 GCCATGAACTTAATC GA-TACCGCTT TTCG GAGCGGTATTC TTTTATCAACGTTTT TERM 768 763836 - 763855 + F 82 -8.6 -4.31397 | opp_overlap 763836, overlap 763834 CATGAACTTAATCGA TACCGCTT TTCG GAGCGGTA TTCTTTTATCAACGT fliD1 764010 - 765296 + | flagellar hook-associated protein 2 TERM 769 765472 - 765505 + G 72 -10.7 -2.53015 | opp_overlap 765472 765471, overlap 765476 765479 GTTATGAGCATAAAG TTAAGAGTATTAATA AATG TATTAATATTCTTAA TGGCTTAACCAGTGT fliS1 765306 - 765689 + | flagellar protein FliS TERM 770 765772 - 765802 + G 76 -8.3 -4.03234 | overlap 765775 TGGCCACGCTTGTTG CTGGTGGATGAGC GCGTG GCTCATCTGCTGG TTTCTATCGCCAAAC YpsIP31758_0657 765691 - 766017 + | putative flagellar protein lafD fliK2 766019 - 767116 + | flagellar hook-length control protein TERM 771 767178 - 767160 - g 100 -10.4 -5.54885 | opp_overlap 767158, overlap 767153 AAGACCAAGAAAAAA GCATTTTC GAT GAAAATGC GGGTATTCCTATTGC YpsIP31758_0659 767142 - 767612 + | putative flagellar protein fliA2 767618 - 768313 + | flagellar biosynthesis sigma factor motA2 768329 - 769195 + | flagellar motor protein MotA TERM 772 769722 - 769733 + G 75 -5.8 -4.5123 | overlap 769708 CCAGCGCAGCAGTGC GGTG TTAA CACC TTTCTTTAGTCGGTT motB2 769195 - 770106 + | hypothetical protein YpsIP31758_0663 770615 - 770752 + | hypothetical protein TERM 773 771143 - 771157 + G 83 -4.4 -5.49579 | opp_overlap 771143 ACATTATATCAACAG TAATAA GTT TTATTA TTTTATTTTTTCTGA YpsIP31758_0664 770749 - 771204 + | hypothetical protein TERM 774 771280 - 771307 + T 73 -7.1 -4.2074 | opp_overlap 771278, overlap 771260 771282 TAGATTACAATATGT GAGCATTGTCT TATTTC AGACAATGCTA TTTCTCTGTTACGAC TERM 775 771282 - 771305 + T 80 -9.7 -3.70043 | opp_overlap 771278, overlap 771260 771280 GATTACAATATGTGA GCATTGTCT TATTTC AGACAATGC TATTTCTCTGTTACG TERM 776 771459 - 771475 + T 72 -6.5 -4.31837 | ATGATGCCGGATACT CAGCCTT CGT ATGGCTG TTTGTTCCCTTTCTT pcP 772190 - 771723 - | outer membrane lipoprotein PcP TERM 777 772189 - 772179 - G 73 -5.4 -4.49316 | opp_overlap 772179, overlap 772175 AGCAGCAAGAATAAA TGGT TTA ACCA TGGTGTAGCCCCTTT TERM 778 772502 - 772529 + r 100 -7.2 -5.78622 | opp_overlap 772504 772506 TAGCAATAGGCTTAA CAGATTCAAAAA TTGA TTTTTAAATCTG TTTTTTTTCAAATAA TERM 779 772719 - 772731 + r 84 -2.7 -5.73672 | CAAAAAATATAATAA CAATG TAC TATTG TTTTTTTCATTGTTT TERM 780 773221 - 773207 - R 95 -9.2 -4.46267 | opp_overlap 773207 AGAAGGCAAGGAAAA CGGGCA GGA CGCCCG TTTTAGGCGTCACGC TERM 781 773207 - 773221 + r 79 -8.5 -4.11216 | opp_overlap 773207 AGAAGGCAAGGAAAA CGGGC AGGAC GCCCG TTTTAGGCGTCACGC TERM 782 773285 - 773254 - R 76 -9.4 -3.54543 | gap 1, overlap 773273 AGGGACCCGCGTAAA GCCGTCCGCCAGCCG AAA CGA-TGACGGAGGGC ATCCACGCAGTGGAC TERM 783 773335 - 773356 + r 100 -12.3 -3.60792 | opp_overlap 773335, overlap 773318 GCGGGGATTCCACAA GGGGTCACG CGCT TGTGACCCC TTTGGCGGTTGCGGC TERM 784 773356 - 773335 - R 86 -11.6 -3.32844 | opp_overlap 773318 773335 GCGGGGATTCCACAA GGGGTCAC GCGCTT GTGACCCC TTTGGCGGTTGCGGC YpsIP31758_0666 776063 - 773496 - | sensory box-containing diguanylate cyclase TERM 785 775116 - 775139 + g 71 -8.8 -3.67597 | opp_overlap 775111 TAACCAATCACTGGC CGATTCTGCC ACAT GGCGGAAACG TTCTTCGCTGGCAGC YpsIP31758_0667 776623 - 777813 + | RND family efflux transporter MFP subunit TERM 786 779152 - 779185 + G 71 -8.9 -3.52906 | gap 1, overlap 779150 AGCCAGATTGCCGGG CCGATCATCGCCACCA CAC TGGTGCTGATGG-CGG TATTTGTGCCAATCG YpsIP31758_0668 777826 - 780945 + | RND efflux transporter TERM 787 781036 - 781001 - g 88 -11.8 -3.85698 | opp_overlap 780997 781002, overlap 781002 CTGTTTTTTCATAAA GCCTATACCCGCCGGT TAAG ACCGGTGGGTATGGGT TACTCTTTGGGGGCG TERM 788 781035 - 781002 - g 95 -15.3 -2.91276 | opp_overlap 781002 780997, overlap 781001 TGTTTTTTCATAAAG CCTATACCCGCCGGT TAAG ACCGGTGGGTATGGG TTACTCTTTGGGGGC TERM 789 781002 - 781035 + G 100 -19.7 -3.45571 | opp_overlap 781001 781002, overlap 780997 TGTTTTTTCATAAAG CCTATACCCGCCGGT TAAG ACCGGTGGGTATGGG TTACTCTTTGGGGGC YpsIP31758_0670 780974 - 781093 + | hypothetical protein YpsIP31758_0669 781525 - 781073 - | hypothetical protein TERM 790 781270 - 781280 + g 83 -6.8 -4.84359 | TTGGCACAAACCCTT GAGG GAT CCTC TTTTTATACAGGTCA TERM 791 781440 - 781459 + g 90 -2.9 -5.85178 | overlap 781444 AATTCTCGATAATCA TTAGGGA AGGTAA TTCCTAA TTTTTTTTCGATATT TERM 792 782099 - 782128 + r 88 -11 -3.88232 | opp_overlap 782099 GTTTTCTTGAAGCTA TTATCCATCAAT GTTAAA ATTGATGGATAA TTATTCTGTCGCAAG TERM 793 782128 - 782099 - R 76 -11 -2.52464 | opp_overlap 782099 GTTTTCTTGAAGCTA TTATCCATCAAT GTTAAA ATTGATGGATAA TTATTCTGTCGCAAG YpsIP31758_0671 783714 - 782224 - | putative enterotoxin TERM 794 782822 - 782834 + g 78 -9.1 -4.11692 | opp_overlap 782816 782815 TGTTCAAAGCCCATT GTCCC ATC GGGAC TTTTAGCGGTAAGTA TERM 795 783923 - 783941 + H 100 -12.4 -4.13995 | CAATTCTGTCTTTGA CCTTCCCC CTG GGGGAGGG TTTAGTTTGTAGGCA TERM 796 784257 - 784276 + G 77 -4.4 -5.04733 | gap 1 GGCAGCAGAAATCTG TTTATCCGC TGG GCG-ATAAA TTTTATTTGTCATTC YpsIP31758_0672 783989 - 784576 + | hypothetical protein TERM 797 784766 - 784750 - f 100 -9.5 -5.02645 | opp_overlap 784748 AACAAACAAAATAAA CAGTAAC TGC GTTACTG AATCATCTTGTTGTT TERM 798 784924 - 784941 + F 86 -2.7 -5.89659 | TATCTGTAGTCTGTT TCTCATA TTGT TGTGGGA TTTTTCTTTTTTTAT TERM 799 786551 - 786571 + G 71 -8.9 -3.60296 | TGATTTATAACCTGG CGGCGGGGT CGA AACTCGCCG TTTCAGGTGCCAATA TERM 800 790111 - 790098 - g 71 -4.5 -4.58283 | GAATGTGGCGAAAAA CGATG CCAG CACCG CGTTTGACTTTGGTT TERM 801 791932 - 791919 - g 71 -4.5 -4.58283 | GAATGTGGCGAAAAA CGATG CCAG CACCG CGTTTGACTTTGGTT TERM 802 795592 - 795579 - g 71 -4.5 -4.58283 | GAATGTGGCGAAAAA CGATG CCAG CACCG CGTTTGACTTTGGTG TERM 803 798419 - 798409 - g 73 -8.2 -3.92542 | GTCACGGTGAAACAA GCCG GGA CGGC AAATATTGCGGAGCT YpsIP31758_0673 785383 - 798558 + | putative autotransporter protein TERM 804 798634 - 798604 - T 84 -11.3 -3.15861 | opp_overlap 798604 CATGATGGTGATCAA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGGGGTAA TERM 805 798604 - 798634 + T 100 -11.3 -5.26316 | opp_overlap 798604 CATGATGGTGATCAA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGGGGTAA YpsIP31758_0674 798818 - 798675 - | hypothetical protein YpsIP31758_0675 799779 - 798823 - | putative outer membrane protein TERM 806 799911 - 799941 + r 84 -5.5 -5.26316 | AGAATGACCTATCTA CGGCGCATATT GCAGGACAG AATATGCACCG TTTTTTATGGGATAA yopM 800960 - 800106 - | outer membrane protein YopM TERM 807 800510 - 800537 + g 71 -8.4 -3.65294 | gap 1 ATTCTTTCAGCCCTT CAGGTAGCGGCTC AGG GAGCCGTT-CCAG TTCATTTCTGTACAC TERM 808 801116 - 801146 + H 100 -11.3 -5.26316 | TGAATGACCTATCTG CGGCGCATATT GCAGAGCAA AATATGCGCCG TTTTTTATGGGGTAA TERM 809 801335 - 801357 + H 77 -8.4 -4.06678 | overlap 801336 TCGCCCGTCATCCCG TTGGCGGC CAATTCA GCCGCCAG TTTATCTGGGTAAAT TERM 810 801336 - 801356 + H 73 -9.7 -3.03525 | overlap 801335 CGCCCGTCATCCCGT TGGCGGC CAATTCA GCCGCCA GTTTATCTGGGTAAA TERM 811 801745 - 801726 - H 89 -12.1 -3.28712 | opp_overlap 801728 CCCTGGGGGCTAGAA CCGCGCC CTCCCT GGCGCGG ACGCTTTACTCTTCT TERM 812 803885 - 803905 + G 76 -8.9 -3.83756 | TTTATTTATGCACTG GGGGTGTGC TGG GCACTCTCC TTTGGATTATCGTTT YpsIP31758_0678 803777 - 805333 + | AbgT family protein TERM 813 805698 - 805677 - f 95 -13.1 -3.15544 | overlap 805662 GCTCATCGGGATTAA TGAGCCTCA TCCG TGAGGCTCA CCCTGCGGGCTAGCA YpsIP31758_0679 805717 - 805842 + | hypothetical protein pepT1 805864 - 807096 + | peptidase T TERM 814 807645 - 807628 - g 77 -2.7 -5.2112 | AACAGCAGCAAAAAA CACCCAT AAGT ATAAGTG TATTAACGGGCTTTG TERM 815 807744 - 807754 + G 81 -3.2 -5.44119 | AAAGCGGGCAACCCA TCTG ACG CAGG TTTTTTTACCATGCG TERM 816 808528 - 808543 + G 71 -2.6 -4.84359 | overlap 808539 GGCCATTTAATTGGT TGATAG GGAG CTATTA TTTTTATCAAGATGA YpsIP31758_0681 807480 - 809552 + | TonB-dependent receptor TERM 817 809568 - 809600 + F 73 -8.5 -3.73858 | opp_overlap 809567 809570, overlap 809570 TAAATATTAACAATG CATATGGCTGTGACT ATT AGATACAGCCATATA TTAATTTTGGTGTAA TERM 818 809570 - 809598 + F 83 -11.1 -3.44148 | opp_overlap 809570 809567, overlap 809568 AATATTAACAATGCA TATGGCTGTGACT ATT AGATACAGCCATA TATTAATTTTGGTGT TERM 819 809903 - 809936 + F 100 -11.1 -4.39107 | overlap 809913 AGGGCCTGCTATTCT GCTTATGCCAGGAGG TTCG CCTTTTGTCATAAGC TTTATTGCTTGTATT TERM 820 813335 - 813324 - g 71 -7.2 -4.07568 | CTGTCGCTTTGAAAA GGCG CAAT CGCC CAAACAATGGTTGGC TERM 821 814101 - 814115 + G 76 -9.2 -3.90586 | opp_overlap 814095 814092 TGCAAAGGAGCGCTA CGCGCT ACG GGCGCG TTTATCCCATCGTAT TERM 822 814895 - 814881 - g 71 -7 -4.08945 | opp_overlap 814881 814889, overlap 814882 ATTACTCGGGGAAAA TGCGCC GGG GGCGCT GCACTATTTGGTTTC TERM 823 814894 - 814882 - g 72 -10.5 -3.05046 | opp_overlap 814881 814889, overlap 814881 TTACTCGGGGAAAAT GCGCC GGG GGCGC TGCACTATTTGGTTT TERM 824 817294 - 817315 + G 77 -10.2 -3.54424 | overlap 817281 GATGCCCTGCCTGAG GGGATTGC TATGCT GCAATCCC TTTGCCACGGTGGGA TERM 825 820028 - 820044 + G 74 -2.9 -5.07567 | opp_overlap 820015 820022, overlap 820022 820030 CACAAGATACGGCCT TGGCGTT ATC AGCGCTG TTTTTTGACCTCTCC YpsIP31758_0683 811396 - 821277 + | nonribosomal peptide synthetase TERM 826 822570 - 822556 - g 83 -11.4 -3.61398 | TGGGGGCGGCAACAA GGCGTG GGG CACGCC AGAATGCCCATCGTT TERM 827 822897 - 822921 + G 83 -9.9 -4.21933 | GGAGGAGGTCGGCAC GGGAGAGGCAC TTT GTGACTCGCCC TTGTTTTGGCATTCA TERM 828 823794 - 823810 + G 82 -12.3 -3.19192 | TTATATCTTGCTTTC CGGGGAT TGG ATCCCCG TTAACTTACCTCCAG YpsIP31758_0684 821290 - 826956 + | putative pyochelin synthetase YpsIP31758_0685 826953 - 828023 + | saccharopine dehydrogenase TERM 829 829089 - 829111 + G 100 -9.8 -4.99035 | TTGCCGAACCGATGA TGGCGTCACC CAA GGTGGCGACA TTTTTATCTCAATGG YpsIP31758_0686 828020 - 829147 + | thiazolinyl imide reductase family protein TERM 830 829570 - 829555 - g 71 -4.6 -4.64676 | overlap 829556 GTATCTTGAACAAAA TCACCC AATT GGGTGG CAGCGCATTGGACTA TERM 831 829786 - 829798 + G 75 -3.3 -5.1244 | TTCGGCTACAGGTGT TCCCC GGT GGGCA TTTTTATCTTAATCA YpsIP31758_0687 829140 - 829904 + | putative thioesterase TERM 832 830198 - 830214 + G 71 -2.9 -5.00616 | TGTGCTCTTTGATTG CCATGAC GCT GCTATGG TTTTTTGCGCCAGAG TERM 833 830221 - 830245 + G 79 -10.8 -3.45742 | gap 1, overlap 830219 CTGCTATGGTTTTTT GCGCCAGAGAC ACAA GTCT-TGGCGC TGTTATTACTGGTCA TERM 834 830435 - 830451 + G 91 -6.5 -5.29445 | GTGTTTGGGGGTGGT CCGTCAC CGT GTGGTGG TTTTTGTTGTTACAG YpsIP31758_0688 829894 - 831198 + | major facilitator transporter TERM 835 831619 - 831668 + G 80 -2.9 -5.38326 | gap 2, overlap 831625 TGGCTCACCATTTAC CCG-A-TATGGCGGCGGCAATTG TCACGC CTATTGCTGCCGCCATTTTACTG TTTTTCTTTGATTGG TERM 836 831625 - 831660 + G 100 -15.5 -4.62102 | overlap 831619 ACCATTTACCCGATA TGGCGGCGGCAATTG TCACGC CTATTGCTGCCGCCA TTTTACTGTTTTTCT TERM 837 831982 - 832005 + G 100 -9.6 -5.00616 | ATCTCGGTTTATTGT GCATTATGCC TGTT GGCATCATGC TTTTTTCCCAAGGGG YpsIP31758_0689 831198 - 832970 + | ABC transporter, permease/ATP-binding protein TERM 838 833435 - 833452 + G 79 -11.3 -3.60971 | opp_overlap 833430 TGCTAAAAGATTGGC GCATGGC GTTA GCCATGC TTTCAACGTTACCCT TERM 839 833689 - 833677 - g 77 -4.7 -4.87786 | overlap 833666 TTAACGGCAGAAAAA GCCGG TGT CTGGC CGATCTACAGTTTTA YpsIP31758_0690 832963 - 834720 + | ABC transporter, permease/ATP-binding protein YpsIP31758_0691 835937 - 835062 - | hypothetical protein TERM 840 836131 - 836151 + r 72 -7.7 -3.75933 | opp_overlap 836150, overlap 836106 836133 836150 CTATTTATATTATTT TATGCTTAA TAG TTAAGCATG TTTAATAACATATAT YpsIP31758_0692 836771 - 836373 - | hypothetical protein TERM 841 837988 - 838010 + H 83 -11.4 -2.94912 | opp_overlap 837992, overlap 837992 AACATAAATGCGGTT CAAATGGGTT CCA GACCCATTTG TCTCTCGCTTGCCGC TERM 842 838625 - 838652 + G 76 -7 -4.42788 | gap 1 AGCCGCGGTAATTAT CATCGGCCTGATC TTT GGTCTGGC-GATG TTTTATGAGGTTGCC TERM 843 839425 - 839445 + G 81 -12.5 -3.08133 | opp_overlap 839429, overlap 839408 TCGGTGCTGCGGTAA TGGACCCGG TCA CCGGGACCA TTACCTCAGTCGATC gntP 838308 - 839651 + | fructuronate transporter TERM 844 840201 - 840188 - f 80 -4.5 -5.14626 | gap 1 ATCACGAAAATAAAA CGCTCG AAA CG-GCG TAGGGTAAGGGGAAT TERM 845 843232 - 843212 - g 72 -11.1 -2.50816 | overlap 843211 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YpsIP31758_0694 840677 - 844456 + | putative autotransporter protein TERM 846 844476 - 844506 + F 83 -9.1 -4.15044 | opp_overlap 844475 844476 TTTTTATGCGTAAAG GGTATCAGTATGC AGTAA GGGTACTGATACC TTTATTCAGGGGAGA TERM 847 844689 - 844679 - f 76 -2.6 -5.40004 | opp_overlap 844679 CAGTAAATTAAAAAA TAAA TCA TTTA TTTAGTATCGCCAAC TERM 848 847669 - 847649 - g 72 -11.1 -2.51464 | overlap 847648 CGATTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YpsIP31758_0695 845114 - 848893 + | putative autotransporter protein TERM 849 848944 - 848912 - f 76 -9.2 -3.57144 | GTTTTTATGCGTAAA GGGTATCAGTATGC AGTAA GGGTACTGATACCC TAATAAATAACCTAA TERM 850 851426 - 851413 - g 83 -2.3 -5.58454 | CGGATATCAAAAAAA TACCC TAGA GGGTT ATAAAAAATCCAAGA YpsIP31758_0696 849479 - 851704 + | putative VgrG protein YpsIP31758_0697 851730 - 853049 + | hypothetical protein TERM 851 853736 - 853789 + G 72 -10.9 -2.74012 | gap 1 TGTCGTTACCCACCT CCGTCATGTTGCCGATC-CCGATGGG CCG CCCGGTGGTGGTGGGCGGCATGCCGG TGCTTAACCTGCTCG TERM 852 855187 - 855203 + G 74 -2.9 -5.00884 | overlap 855188 CAGCGCACGGAACTG GCCTATG ATG CATGGGG TTTTTTGCGGGCCAT YpsIP31758_0698 853063 - 857541 + | YD repeat-/RHS repeat-containing protein YpsIP31758_0699 857561 - 857923 + | hypothetical protein TERM 853 859413 - 859427 + G 77 -5 -4.91109 | overlap 859414 AATGTATTTTGGTAT TTATCC ATG GGATAG TTTTTATGATAAAAG TERM 854 859493 - 859505 + G 71 -2.7 -4.87786 | AACCGCCCTTTGCCC GAGAT AAA ATTTC TTTTTCTGAGATTGA YpsIP31758_0701 859027 - 859542 + | hypothetical protein TERM 855 859602 - 859636 + F 70 -9.4 -2.7898 | opp_overlap 859621, overlap 859627 ATTTCTTATTTTTTT TAGTGAGTAGCTCTAA ATA TTAGAGCTACTCAAAG TGGTTAAGTATTAGC YpsIP31758_0702 859673 - 860011 + | hypothetical protein YpsIP31758_0703 860252 - 860776 + | hypothetical protein TERM 856 861011 - 861000 - f 70 -5.8 -4.29907 | overlap 861005 861008 ATATTAGAATATAAA GCCA ATAA TGGC GGAAGACGTCCTCCA YpsIP31758_0704 861051 - 861437 + | hypothetical protein TERM 857 862045 - 862032 - g 77 -6.7 -4.59773 | TCTTACTTTGAAAAA TCTGG ATAG CCAGA AAGTTGTCTCCGGCA YpsIP31758_0705 861982 - 862395 + | hypothetical protein TERM 858 862537 - 862516 - T 86 -10.2 -3.86346 | opp_overlap 862516 TCATTGCCCCATAAA TTAGGCCC ATGCAG GGGCCTAA TTCCCTGACGGCGTA TERM 859 862516 - 862537 + T 76 -10.2 -3.05596 | opp_overlap 862516 TCATTGCCCCATAAA TTAGGCCC ATGCAG GGGCCTAA TTCCCTGACGGCGTA YpsIP31758_0706 863953 - 862574 - | divalent anion:Na+ symporter (DASS) family protein TERM 860 863816 - 863804 - G 80 -9.1 -4.18934 | overlap 863812 GAGGATGCCAATAAA GGCCA AGA TGGCC AGGCCGCGATTGGCG YpsIP31758_0707 865230 - 864235 - | LacI family sugar-binding transcriptional regulator TERM 861 865077 - 865089 + g 76 -9.1 -3.87815 | TATCTCTGGCAATGG GCCGT TCC ACGGC TTTATGGACATAGCC TERM 862 865216 - 865241 + g 91 -3.3 -5.85737 | gap 1, overlap 865209 865222 TACTCCCGCTTTGGC CGCAATGTGGCT CAT AGTCACTTT-CG TTTTTTTATTCATAT TERM 863 865222 - 865236 + g 77 -6.4 -4.57518 | overlap 865209 865216 CGCTTTGGCCGCAAT GTGGCT CAT AGTCAC TTTCGTTTTTTTATT YpsIP31758_0708 865548 - 866621 + | hypothetical protein gph1 866783 - 868207 + | sugar (glycoside-Pentoside-hexuronide) transporter TERM 864 868446 - 868401 - T 82 -7.9 -4.55697 | opp_overlap 868401 868406, overlap 868406 ATTGCCATAAACAAA TTATAGGGGC-TTGCGCAA TGTCTTAATT TTGCGCAAAGCCCCT-TAA TTATTGATGGGTGAT TERM 865 868401 - 868446 + T 80 -10 -3.73914 | opp_overlap 868401 868406, overlap 868406 ATTGCCATAAACAAA TTATAGGGGC-TTGCGCAATGT CTTA ATTTTGCGCAAAGCCCCT-TAA TTATTGATGGGTGAT TERM 866 868442 - 868406 - T 77 -10.3 -3.16414 | gap 1, opp_overlap 868401 868406, overlap 868401 CATAAACAAATTATA GGGGC-TTGCGCAA TGTCTTAATT TTGCGCAAAGCCCC TTAATTATTGATGGG TERM 867 868406 - 868442 + T 100 -12.4 -3.56142 | gap 1, opp_overlap 868406 868401, overlap 868401 CATAAACAAATTATA GGGGC-TTGCGCAATGT CTTA ATTTTGCGCAAAGCCCC TTAATTATTGATGGG YpsIP31758_0710 870694 - 868514 - | TonB-dependent siderophore receptor iucD 872094 - 870766 - | aerobactin siderophore biosynthesis protein IucD iucC 873839 - 872091 - | aerobactin siderophore biosynthesis protein IucC iucB 874786 - 873836 - | aerobactin siderophore biosynthesis protein IucB iucA 876542 - 874770 - | aerobactin siderophore biosynthesis protein IucA TERM 868 875605 - 875627 + g 74 -11.3 -2.78032 | opp_overlap 875603 875602, overlap 875604 875603 GTTTGAGCCAAACGT GCCAAGCGC ATACC GCGTTTGGC CTCTTTTACCGACAG TERM 869 877454 - 877471 + G 74 -6.3 -4.42238 | gap 1, overlap 877443 877457 ATTCGGCCACCACGG TGAGCCAC CAC GTGGC-CA TTTTGCTTAGCATAG YpsIP31758_0715 876682 - 877905 + | major facilitator transporter YpsIP31758_0716 879028 - 878195 - | dioxygenase family protein YpsIP31758_0717 879102 - 879224 + | hypothetical protein TERM 870 879245 - 879206 - T 100 -9.6 -5.93809 | opp_overlap 879180 879213, overlap 879209 TTTTTATAAAAAAAA TGATAAATTTCATGCTTA ATTA TTAGCATGAAATTTATAA TAGGGAAGGGACAAT TERM 871 879242 - 879209 - T 90 -11.3 -3.65606 | opp_overlap 879180 879213, overlap 879206 TTATAAAAAAAATGA TAAATTTCATGCTTA ATTA TTAGCATGAAATTTA TAATAGGGAAGGGAC TERM 872 879213 - 879238 + T 74 -7.7 -3.96148 | opp_overlap 879209 879206 AAAAAAAATGATAAA TTTCATGCTTA ATTA TTAGCATGAAA TTTATAATAGGGAAG YpsIP31758_0718 880777 - 879419 - | hypothetical protein TERM 873 880514 - 880492 - G 71 -10.6 -2.83449 | opp_overlap 880494 880496, overlap 880489 880494 880496 ACAGCGCTATAATCA TATAGCGTCC TGA GGGCGCTATA TCTGCCGGATTAGTA TERM 874 880494 - 880512 + g 74 -11 -2.88579 | opp_overlap 880492 880489 880494 880496, overlap 880496 AGCGCTATAATCATA TAGCGTCC TGA GGGCGCTA TATCTGCCGGATTAG TERM 875 881107 - 881163 + H 70 -3.9 -4.78157 | gap 1, opp_overlap 881113, overlap 881113 GGAGCTAGACATTAT ATTAAATGCTACAGAAGTTCTACTTG CAGAAA CAGGT-GCACTTCTGTAGCATTTTCC TTTATTATTTTTGGT TERM 876 881157 - 881113 - H 86 -10.2 -3.88062 | gap 1, opp_overlap 881107 881113 AGACATTATATTAAA TGCTACAGAAGTTCTACTTGC AGAA ACAGGT-GCACTTCTGTAGCA TTTTCCTTTATTATT TERM 877 881113 - 881157 + H 100 -11.7 -4.71708 | gap 1, opp_overlap 881113, overlap 881107 AGACATTATATTAAA TGCTACAGAAGTTCTACTTG CAGAAA CAGGT-GCACTTCTGTAGCA TTTTCCTTTATTATT TERM 878 881313 - 881293 - H 74 -9.8 -3.15544 | opp_overlap 881284 881279 881293 CGGTAGTTGTACTAA GGTGCAAT TTCCT ATTGCACC TTAGTACAGTAAATG TERM 879 881293 - 881313 + H 74 -9.8 -3.16881 | opp_overlap 881293, overlap 881284 881279 CGGTAGTTGTACTAA GGTGCAAT TTCCT ATTGCACC TTAGTACAGTAAATG YpsIP31758_0720 881339 - 882082 + | LuxR family transcriptional regulator ytbI 882713 - 882063 - | N-acylhomoserine lactone synthase YtbI TERM 880 882620 - 882636 + g 70 -2.2 -4.95957 | opp_overlap 882620 TCACCTCCCAGTTAA GACGAT CCTTA AACGTC TTTTTCCTTAATTTA YpsIP31758_0721 883884 - 884534 + | CAAX amino terminal protease family protein YpsIP31758_0722 884784 - 884659 - | hypothetical protein YpsIP31758_0723 884985 - 885380 + | putative lipoprotein YpsIP31758_0724 885448 - 885711 + | IS1, transposase orfA TERM 881 885902 - 885892 - T 70 -2.6 -4.96773 | GGAATCAAAAATAAA TTTA TGT TAAA ACTAATTATTTTTAT TERM 882 886011 - 886022 + T 88 -3 -5.84011 | CAGAAGCGTTGGGAT GATA TTTA TATC TTTTTATTTTTTATT YpsIP31758_0725 886383 - 886255 - | hypothetical protein YpsIP31758_0726 887643 - 888143 + | hypothetical protein TERM 883 888231 - 888209 - g 74 -6.3 -4.34402 | gap 1, overlap 888210 GTCTGTACAGGAAAA CCGTGCGCAG GGTA CTGCG-ACGA CCGTATTAAAGAATA YpsIP31758_0727 888186 - 889736 + | hypothetical protein TERM 884 890207 - 890179 - g 73 -3.7 -4.91109 | overlap 890180 CGGCGATGACAAAAA GCAGGTCGCGGTG ATG CACCACCAACTGA CCCTGCGGCTGGACA YpsIP31758_0728 889748 - 891100 + | hypothetical protein TERM 885 891387 - 891404 + G 74 -2.6 -5.09225 | overlap 891389 891390 CTTCGTGTGGTGCCA TTCGCC CTTACA GGCGCA TTTTTTCAATACCCT YpsIP31758_0729 891097 - 891783 + | hypothetical protein TERM 886 892870 - 892900 + G 77 -10.4 -3.61398 | GGGTGGCCTTTGATA TCCGTCAGTACCAC AGC GTGGCGATGACGGA TTATTCCCCGAAAGC YpsIP31758_0730 891783 - 893519 + | OmpA domain-containing protein YpsIP31758_0731 893523 - 894014 + | hypothetical protein TERM 887 894149 - 894168 + F 100 -11.4 -5.72254 | GGGTAACCCGCATCA GCAGGCGG TTCG CCGTCTGC TTTTTTATTGTTTGC clpV1 894308 - 896956 + | type VI secretion ATPase YpsIP31758_0733 896953 - 899301 + | type VI secretion system family protein TERM 888 899376 - 899356 - g 100 -15.5 -3.18511 | opp_overlap 899360 GAGATAGAGATGCAA CCCAGTCAG ATG CTGACTGGG TTGACGCGATGATGC YpsIP31758_0734 899316 - 901538 + | M23 peptidase domain-containing protein TERM 889 901629 - 901609 - f 73 -9.7 -3.03348 | opp_overlap 901613, overlap 901608 901612 GGGAAGAGCATAAAT CAACCCCTC TGG GAGAGGCTG CTATAAATATTCCTG TERM 890 901626 - 901612 - f 70 -7.8 -3.64902 | opp_overlap 901613, overlap 901609 901608 AAGAGCATAAATCAA CCCCTC TGG GAGAGG CTGCTATAAATATTC TERM 891 901748 - 901733 - f 74 -7.6 -3.93583 | TAAGCTATGCAGAAA TTCCTC AAGT GAGGAA AGTGATTATTTCACA YpsIP31758_0735 902342 - 902617 + | IS1 family transposase orfA TERM 892 903281 - 903291 + F 84 -2.6 -5.60993 | opp_overlap 903265 CATTACACAAACTAT TTAT ATA ATAA TTTTTTTGTAGAAGG TERM 893 906470 - 906457 - g 71 -3.9 -4.75288 | GTACAGTAAAAGAAA TTGAT AAAG ATCAA GCAGAAAGTGCCGAT YpsIP31758_0738 904299 - 906596 + | M23 peptidase domain-containing protein TERM 894 906608 - 906627 + G 71 -3 -5.00616 | TTAAAAAATTGACAT TGAAATAT TTTT ATATTTTA TTTTTTACACCCCAC TERM 895 906725 - 906714 - g 74 -4.4 -4.84033 | AGACAAAAATGAAAA TGCA ATTT TGCA TGTAAAAAAAAACCA YpsIP31758_0739 906583 - 907350 + | hypothetical protein YpsIP31758_0740 907446 - 907721 + | IS1 family transposase orfA YpsIP31758_0741 907775 - 908143 + | IS1 family transposase orfB TERM 896 908386 - 908396 + F 84 -2.6 -5.60993 | opp_overlap 908370 CATTACACAAACTAT TTAT ATA ATAA TTTTTTTGTAGAAGG TERM 897 908775 - 908755 - f 72 -9.7 -2.9006 | opp_overlap 908760, overlap 908758 AAGGTACTGGAGATA CAACCGGCT ATC AGCCTGTTG AAAAGTGCGCAGGAA YpsIP31758_0743 909405 - 909713 + | phage integrase family site specific recombinase TERM 898 909844 - 909818 - T 81 -7.2 -4.71776 | opp_overlap 909818 TAAGACGCAAGAAAA CCGAAGTTTGTC ATC GACATCCTCCGG TTTCTTCGTCCCGTA TERM 899 910174 - 910122 - T 79 -11.4 -2.52623 | opp_overlap 910122 910124, overlap 910121 910119 910124 CTCCTGCGAGAATAT TACCTGTTATTCAGGGTGGTTCCA GATAA CGGAACCACCCTGAGCATCAACTA TAATGTAATCTGAGG TERM 900 910172 - 910124 - T 70 -9.6 -2.80074 | opp_overlap 910124 910122, overlap 910122 910121 910119 CCTGCGAGAATATTA CCTGTTATTCAGGGTGGTTCCA GATAA CGGAACCACCCTGAGCATCAAC TATAATGTAATCTGA YpsIP31758_0744 910459 - 910172 - | DNA-binding protein YpsIP31758_0745 910769 - 910446 - | hypothetical protein YpsIP31758_0746 911835 - 910969 - | hypothetical protein TERM 901 911879 - 911859 - R 91 -8.3 -4.61873 | CTCCATAAAGCAAAA CGCCAAC TCTTGTT GTTGGCG TCGAGGAAGAGGGAT YpsIP31758_0747 912251 - 911931 - | hypothetical protein YpsIP31758_0748 912619 - 912263 - | hypothetical protein YpsIP31758_0749 913007 - 912675 - | hypothetical protein YpsIP31758_0751 912819 - 913004 + | hypothetical protein YpsIP31758_0750 913489 - 913001 - | RadC family DNA repair protein TERM 902 913336 - 913311 - G 71 -4.7 -4.50583 | gap 1, overlap 913314 AAGAGCACCATAAAA CACTCTCGGCCC TGA GGGCGAAGA-TG GAGTTGCAGCCAGGC YpsIP31758_0752 913937 - 913506 - | antirestriction ArdB family protein TERM 903 913976 - 914004 + r 100 -15.9 -3.86346 | opp_overlap 913976 CGGTTAATAACAAAA CAGGCCCCACCGG AAA CCGGGGGAGCCTG TTTGTGGGGGGGTAA TERM 904 914004 - 913976 - R 100 -18.1 -4.89477 | opp_overlap 913976 CGGTTAATAACAAAA CAGGCCCCACCGG AAA CCGGGGGAGCCTG TTTGTGGGGGGGTAA YpsIP31758_0753 914325 - 914065 - | hypothetical protein YpsIP31758_0754 915146 - 914325 - | hypothetical protein TERM 905 915181 - 915208 + r 100 -15.6 -3.11272 | opp_overlap 915181 GATTAAAAACAAAAA GGCCATGCGTCC CGAA GGAGGCATGGCC TGTTAGATGATGATA TERM 906 915208 - 915181 - R 100 -15.6 -5.65496 | opp_overlap 915181 GATTAAAAACAAAAA GGCCATGCGTCC CGAA GGAGGCATGGCC TGTTAGATGATGATA YpsIP31758_0755 915710 - 915243 - | hypothetical protein TERM 907 915303 - 915323 + g 81 -3.2 -5.38249 | gap 1, overlap 915306 TTTCGTATTTTTCAG GCCGGG-GT TGAA ACTCCCTGC TTTTTTGTCATTAAT YpsIP31758_0756 916350 - 915814 - | hypothetical protein YpsIP31758_0757 917093 - 916473 - | hypothetical protein YpsIP31758_0758 917800 - 917099 - | transcriptional regulator YpsIP31758_0759 918888 - 918013 - | putative GTPase TERM 908 918941 - 918916 - R 82 -4.8 -5.38839 | GACAGAAAAACAAAA CACCCAAT TTAACGACGT ATTGGGTG CGGTTCACGAAGGTA YpsIP31758_0760 919883 - 918996 - | hypothetical protein YpsIP31758_0761 920444 - 920298 - | hypothetical protein TERM 909 920371 - 920382 + g 75 -5.8 -4.56914 | overlap 920366 GTGAATGTTGCCAAT GTCG CATT CGAC TTTTCATTTAAATAA YpsIP31758_0762 921173 - 921802 + | hypothetical protein YpsIP31758_0763 921909 - 922118 + | AlpA family protein YpsIP31758_0764 922403 - 922236 - | hypothetical protein YpsIP31758_0765 922476 - 922604 + | hypothetical protein YpsIP31758_0766 922613 - 922744 + | hypothetical protein YpsIP31758_0767 923029 - 923625 + | hypothetical protein YpsIP31758_0768 924077 - 924703 + | hypothetical protein YpsIP31758_0769 925350 - 924763 - | IS630 family transposase TERM 910 924833 - 924869 + g 71 -3.8 -4.74767 | gap 2, opp_overlap 924822 AACACCGGGTTTTCC TGGCTGC-A-CAGCGC AAGAGCG GCGTTGATAGCGGCCA TTTTGTCTTCCTTAT TERM 911 925285 - 925298 + g 74 -3.1 -5.08824 | overlap 925267 GTGGTTTTTGTCACG CGTTT TATG AAGCG TTTTTTGCATCAGGC TERM 912 925643 - 925669 + H 70 -9.7 -2.53208 | opp_overlap 925647, overlap 925642 925647 AGTAATATAGGTCTT TAAATCAAGTT AATTC AACTTGATTTA CTAATTTTATCATTT TERM 913 927522 - 927502 - g 79 -3.4 -5.28983 | gap 1, opp_overlap 927506 927519, overlap 927506 TTTAAAAGAGAAAAA TAC-ATTCG GTCT CGAATTGTA TAATTTTAATACACT YpsIP31758_0770 926036 - 927595 + | resolvase family site-specific recombinase YpsIP31758_0771 927592 - 928482 + | ParB family protein TERM 914 928810 - 928797 - g 100 -5.3 -5.64873 | TCCAAGAACAAAAAA TGCTT CAAA AAGCA ATCGATTCAGGCGTA YpsIP31758_0772 928475 - 929359 + | RepB plasmid partitioning protein TERM 915 929474 - 929451 - T 100 -16.8 -5.88197 | TGAAATATAAAAAAA CCGTTGCCTC TAGA GAGGCAACGG TGAGAGGGACAATCA YpsIP31758_0773 929992 - 929753 - | hypothetical protein TERM 916 930209 - 930231 + r 80 -9.9 -3.5861 | ACATAAATATCCCTG CCTCTGACT TCAAT GGTCAGAGG TTCCTTATTGTCGGT YpsIP31758_0774 930918 - 930649 - | hypothetical protein YpsIP31758_0776 931871 - 931614 - | PerC family transcriptional regulator TERM 917 931801 - 931823 + g 74 -2.6 -5.09762 | opp_overlap 931801, overlap 931790 931802 GCCCTTCGCCAGAAT CCGGCCAATT CTA AATCGGTCGC TTTTTGTATTAACGT TERM 918 932439 - 932414 - H 100 -9.2 -5.41143 | opp_overlap 932417 CATTTCTGAAAAAAA TAATTGTAGG TATATT CCTACAATTA GCTCCATAAACTCTC YpsIP31758_0777 932854 - 933354 + | hypothetical protein YpsIP31758_0778 933399 - 934952 + | hypothetical protein TERM 919 934983 - 935032 + F 79 -10.7 -2.94679 | gap 1, opp_overlap 934976, overlap 934979 AAACAGCAGCATTGT TGGCTATGCCCATTCACCCCAGTC AAT GACCGGGGTGAAT-GCCCTTGCCG TAATTTGAAATTCAT TERM 920 935094 - 935111 + G 73 -5.5 -4.54727 | TGAAGATTGAACGTC CTCTGTG GACT CGCGGAG TTTTGATTTCCCCGC YpsIP31758_0779 935078 - 936430 + | hypothetical protein YpsIP31758_0780 936427 - 937113 + | hypothetical protein TERM 921 937356 - 937340 - g 78 -9.4 -4.13767 | opp_overlap 937338 937340 GCTTCCACCTGAAAA CCACCG TTTAC CGGTGG TGTTGGTCTGCGGTG YpsIP31758_0781 937113 - 938834 + | OmpA domain-containing protein YpsIP31758_0782 938848 - 939339 + | hypothetical protein YpsIP31758_0783 939530 - 939402 - | hypothetical protein TERM 922 939549 - 939568 + H 100 -9.2 -5.41787 | overlap 939550 ACTTTGTCGTCAACC TCAGGCGG TTCG CCGCCTGC TTTTTGTGTTTTTTA TERM 923 939550 - 939567 + H 100 -12.7 -3.81412 | overlap 939549 CTTTGTCGTCAACCT CAGGCGG TTCG CCGCCTG CTTTTTGTGTTTTTT TERM 924 941079 - 941057 - H 73 -9.8 -3.06515 | opp_overlap 941047, overlap 941056 TGCGAGGCTTAAAAG GCCGTTATGC CCA GCACCACGGC GTGCACATTCTGGAT YpsIP31758_0785 942531 - 945029 + | Rhs element Vgr protein TERM 925 946053 - 946043 - g 74 -4 -5.00616 | TGTTGGTGCAAAAAA TACT TTT AGTA ACATTAGCCTCTCTC YpsIP31758_0786 945147 - 946418 + | hypothetical protein TERM 926 946558 - 946533 - g 74 -11.3 -2.75481 | overlap 946538 946554 946555 GCCGAAGTTGAACCA CCTAACTTACC TGAA GGTAAATTAGG GCAACCCTACTACGC YpsIP31758_0787 946425 - 946817 + | putative lipoprotein YpsIP31758_0788 947132 - 949834 + | Rhs element Vgr protein YpsIP31758_0789 949837 - 950253 + | hypothetical protein YpsIP31758_0790 950262 - 951074 + | hypothetical protein TERM 927 951264 - 951250 - f 75 -5.7 -4.63218 | GCCTTGGGAAGAAAA GGGAA TGTCG TTCCC AGTACCTCCATATCC YpsIP31758_0791 951254 - 952009 + | hypothetical protein YpsIP31758_0792 952014 - 952532 + | hypothetical protein YpsIP31758_0793 953009 - 953152 + | hypothetical protein TERM 928 953472 - 953489 + G 83 -9.1 -4.44915 | AGTTCTGGTGGTTTG CCATCGG TATC CCGGTGG TTTTCTGGCTGGTTC YpsIP31758_0794 953312 - 954544 + | hypothetical protein TERM 929 955443 - 955470 + G 74 -9.8 -3.56643 | gap 1 GCAGGGCGATGCCAC CCGCTGGCGGCAG CGT CTGACGCC-GTGG TTTACCGAGTATGCG TERM 930 956246 - 956236 - g 77 -8.2 -4.20806 | opp_overlap 956235 GACTGGAAAATTAAA CCGG ATA CCGG GTTGGTAAGCCAGGT TERM 931 956495 - 956480 - g 78 -6 -4.68545 | overlap 956482 AGGCAATAGATAAAA CGGTGG CCTC CCGCCG CGAAGAGATTGACTG TERM 932 956940 - 956919 - g 74 -6.5 -4.42653 | overlap 956922 AGGCGATGCACAAAA CAGGCTGTC GTCG GACAGCTCG CTGAGCCTGCAAACG TERM 933 957797 - 957759 - g 80 -3.9 -5.28983 | gap 2, overlap 957761 GGCAAAACAGAAAAA GCTG-GATGAAGGGC-GTT ATC AACTGACCTTCACCACCGC GGATAACCTACCACT YpsIP31758_0795 954541 - 957963 + | hypothetical protein TERM 934 958517 - 958547 + G 95 -13.2 -3.81259 | overlap 958541 AATCGAACAGAGCCT CAGCGGCTGGGATG ACG CATCCCGTCCGCAG TTTGGTGGATTGTAT TERM 935 958760 - 958737 - g 75 -8.1 -4.30034 | opp_overlap 958737 958759, overlap 958739 AAAACGTTAGCAAAA TACCTGCGG AACCAG CCGCAGGGA TGGCTCTCCGGGCAT TERM 936 958758 - 958739 - g 81 -10.7 -3.74158 | opp_overlap 958737, overlap 958737 AACGTTAGCAAAATA CCTGCGG AACCAG CCGCAGG GATGGCTCTCCGGGC TERM 937 959160 - 959147 - g 70 -8.1 -3.85698 | GCTGGGGTGGATAAA CCAGC AGGT GCTGG AGTCGGTGTCGGGCT YpsIP31758_0796 958005 - 959609 + | ImpA domain-containing protein YpsIP31758_0797 959627 - 960685 + | PAAR domain-containing protein TERM 938 961026 - 961042 + G 71 -6.5 -4.254 | overlap 961037 ACAAGCATTTATGCT CACCAGA GCC TCTGGAG TTTGTTCAGTATTGA YpsIP31758_0798 960700 - 961155 + | hypothetical protein YpsIP31758_0799 961183 - 961299 + | hypothetical protein TERM 939 962105 - 962082 - gf 83 -11.8 -2.82516 | gap 1, opp_overlap 962080 962075 962084, overlap 962084 TCGGGGAGCAGGATA CACTGT-GGCC GAA GGCCGACAGTG CGTTCAGTGGTTATC YpsIP31758_0800 961400 - 963163 + | hypothetical protein TERM 940 964075 - 964049 - gf 70 -9.4 -2.78384 | TGGTGTTGGATGAGA CGCCGGTCAG GTTGGGA CTGACCGGGG TGCTGGGGCTGGATG YpsIP31758_0801 963127 - 964212 + | hypothetical protein YpsIP31758_0802 964187 - 964768 + | hypothetical protein YpsIP31758_0803 964768 - 965217 + | hypothetical protein YpsIP31758_0804 965463 - 965335 - | hypothetical protein TERM 941 966517 - 966539 + G 73 -5.4 -4.64334 | GAGCCGCCACCCCCT CCGCGCTGGA AAG TCGGGCACGG TTTTATTGCCGGGTT YpsIP31758_0805 965818 - 967215 + | ImpA domain-containing protein TERM 942 967212 - 967202 - f 71 -8.2 -3.53444 | TCACGTTGCCCGAAA CGGC ATC GCCG TAGGTGTGATGCGCG TERM 943 967710 - 967700 - g 77 -6.8 -4.58685 | AAAGTGGTTCAAAAA CTGC ACC GCAG AAGTGTTGAGTCGAT YpsIP31758_0806 967310 - 967942 + | hypothetical protein YpsIP31758_0807 968006 - 969856 + | hypothetical protein TERM 944 970033 - 970023 - T 100 -5.4 -5.93809 | opp_overlap 970023 TGGGGACAAAAAAAA TCTG AAG CAGA CTTAATCTGACAGAT YpsIP31758_0808 975730 - 970166 - | hypothetical protein TERM 945 971448 - 971465 + g 73 -5.6 -4.50943 | opp_overlap 971435 971448, overlap 971435 ATCATGATGACATCA CGTTCA TCACCC TGAACG TTTTCTAAGTTCTTA TERM 946 973094 - 973072 - G 75 -11.4 -2.60392 | opp_overlap 973067, overlap 973071 CATCGTTGAAGTAAT CGCTTACTCT TAA AGAGTAAGCA TCCCAGAGTTGGTTC TERM 947 975990 - 976022 + r 72 -9.2 -3.15677 | opp_overlap 975991 AATTGCCATTTTATA ACTGAGTCTAGACA TATCC TGCCTAGACTCAGA TTAAATCCTTATCTG TERM 948 976021 - 975991 - R 100 -14.9 -3.32963 | opp_overlap 975990 ATTGCCATTTTATAA CTGAGTCTAGACA TATCC TGCCTAGACTCAG ATTAAATCCTTATCT YpsIP31758_0809 977386 - 976127 - | phage integrase family site specific recombinase TERM 949 977570 - 977551 - H 100 -12.2 -4.81249 | opp_overlap 977551 TTTTAAATGCAAAAA TGGACGTC AGTT GACGTCCA TTGATAATAAGGTGG TERM 950 977551 - 977570 + H 86 -12.2 -3.21747 | opp_overlap 977551 TTTTAAATGCAAAAA TGGACGTC AGTT GACGTCCA TTGATAATAAGGTGG TERM 951 977616 - 977632 + H 76 -10.9 -2.62616 | opp_overlap 977615 977613 977610 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA TERM 952 978059 - 978069 + H 78 -4 -5.09225 | CTGCTTTATTTCTAC TAAG CCC CTTA TTTTTTCCATGCGGT YpsIP31758_0810 978155 - 978307 + | hypothetical protein TERM 953 978702 - 978731 + G 77 -4.3 -5.00884 | gap 1 ATGAATAACTCGACC TTTGCTTGCCCTGG CCA TCAGGG-GGGCGAA TTTTTTCGCAAGCAT TERM 954 978751 - 978761 + G 76 -2.4 -5.1925 | TTCGCAAGCATCCTG CAGG ACG CCAG TTTTTTGAATTCTAC TERM 955 979030 - 979044 + G 71 -7 -4.03234 | GTGCGCTGATCCAGG CGGGCG CGA CGCCGG TTTATCTGGAAACGG speC 978327 - 980489 + | ornithine decarboxylase YpsIP31758_0812 981070 - 982029 + | sugar ABC transporter, periplasmic sugar-binding protein TERM 956 982313 - 982284 - g 71 -3 -4.95155 | gap 1 CGGAGAGGAGAAAAA CTTTACTTCACCG ATCCA CAGTAAAG-AAAG CCGTATTGGCATTAT YpsIP31758_0813 982075 - 983574 + | sugar ABC transporter, ATP-binding protein TERM 957 983689 - 983700 + G 83 -4.4 -5.35721 | TCCTGCTAGACAACT CAAC GACC GTTG TTTTTATTGTTATGT YpsIP31758_0814 983607 - 984590 + | sugar ABC transporter, permease protein TERM 958 984650 - 984623 - T 73 -8.5 -3.65351 | opp_overlap 984625 984627 GGACGTTGATCTAAA CAGAGGGCA GCAGTAACAA TGCCCTCTG TAGTAACATTACCCT YpsIP31758_0815 986925 - 984781 - | TonB-dependent siderophore receptor TERM 959 986071 - 986106 + g 79 -11.1 -3.57792 | opp_overlap 986081 GGTGGCGTTATAGCT CTCGTCGAAACGGCG ATCACG CGGCGTGTCGACGGG TTTGCCAGTGCGTGG YpsIP31758_0816 988018 - 986918 - | ABC transporter, periplasmic substrate-binding protein YpsIP31758_0817 989394 - 988318 - | murein transglycosylase C TERM 960 988886 - 988910 + g 100 -9.4 -5.18371 | gap 1, opp_overlap 988886 ACGAACGAGATCACA TGCAAAC-CGG AAGT CCGTGTTTGCA TTTTGTTTTGTAGCA TERM 961 989697 - 989673 - R 83 -9.3 -4.015 | gap 1, opp_overlap 989670 989666 989676, overlap 989676 CTATTTAGGAAATAA CAGCGGGGCC TTAATT GGCCCCG-TG TGGTTACTTACTCGG TERM 962 989695 - 989676 - R 83 -12.1 -2.75069 | opp_overlap 989676 989670 989666, overlap 989673 TTTAGGAAATAACAG CGGGGCC TTAATT GGCCCCG TGTGGTTACTTACTC TERM 963 989676 - 989695 + r 86 -12.1 -2.97613 | opp_overlap 989673 989676, overlap 989670 989666 TTTAGGAAATAACAG CGGGGCC TTAATT GGCCCCG TGTGGTTACTTACTC YpsIP31758_0818 989973 - 989701 - | hypothetical protein mutY 991266 - 990151 - | adenine DNA glycosylase trmB 991679 - 992398 + | tRNA (guanine-N(7))-methyltransferase YpsIP31758_0821 992398 - 992724 + | hypothetical protein TERM 964 992773 - 992756 - f 71 -9.8 -2.68493 | opp_overlap 992756, overlap 992755 992753 CTGATCATTAAACAG GGCGCC CTAACC GGCGCC TTTGTTTTTACTGGC TERM 965 992756 - 992773 + F 100 -9.8 -4.91852 | opp_overlap 992756 992755 992753 CTGATCATTAAACAG GGCGCC CTAACC GGCGCC TTTGTTTTTACTGGC YpsIP31758_0822 992835 - 993761 + | glutaminase YpsIP31758_0823 993873 - 994607 + | hypothetical protein TERM 966 994635 - 994613 - f 91 -7.6 -4.75472 | overlap 994614 994615 CTTAGAGTAATAAAA GGGGGGGG GGATATT CCCCCTCC AACCCCCTCCAAATT TERM 967 994636 - 994614 - f 73 -9 -3.4456 | overlap 994613 994615 TTAGAGTAATAAAAG GGGGGGGGGA TAT TCCCCCTCCA ACCCCCTCCAAATTT TERM 968 994635 - 994615 - f 88 -12.5 -2.66013 | overlap 994613 994614 TAGAGTAATAAAAGG GGGGGGGGA TAT TCCCCCTCC AACCCCCTCCAAATT TERM 969 997483 - 997463 - g 81 -12.7 -2.56271 | overlap 997462 997460 997465 GTGTTATTACAAGAT GACTCTCTT TCT AAGAGAGTC GGAGAGATTATTGCT TERM 970 1002548 - 1002574 + G 78 -5.8 -4.67755 | opp_overlap 1002556 TTTATTAGGCTCTCA CCTCAAGAGCAT TCA ATGCTAATGGGG TTTTTACCTCGCTAT YpsIP31758_0824 995132 - 1004446 + | putative phage minor structural protein TERM 971 1004500 - 1004473 - T 74 -9.8 -3.14961 | overlap 1004471 1004469 ATTAGCAGGAAGAGA GGCTGAGGGCAG GTTT CTGCCCTCAGAG ACACCAGTCATACTG YpsIP31758_0825 1005745 - 1004615 - | coproporphyrinogen III oxidase TERM 972 1005436 - 1005419 - G 71 -9.1 -3.56643 | opp_overlap 1005433, overlap 1005396 CTGATAGCCGCTAAA GCGATCG GCTT CGACCGC TCCGGGGTTGGCTTC rdgB 1006331 - 1005738 - | putative deoxyribonucleotide triphosphate pyrophosphatase YpsIP31758_0827 1006721 - 1006431 - | hypothetical protein YpsIP31758_0828 1007272 - 1006718 - | YggT family membrane protein proC 1008381 - 1007560 - | pyrroline-5-carboxylate reductase YpsIP31758_0830 1009212 - 1008514 - | hypothetical protein TERM 973 1008775 - 1008811 + g 81 -13.1 -2.87527 | opp_overlap 1008778, overlap 1008779 ACTAATGCTGTCAGC CAAGGCGGGGAGTTC ACTCAAG GAAATCCCCGCTTTG CTTTGCTCATCACTG TERM 974 1008779 - 1008807 + g 85 -10.3 -4.11623 | opp_overlap 1008778, overlap 1008775 ATGCTGTCAGCCAAG GCGGGGAGTTC ACTCAAG GAAATCCCCGC TTTGCTTTGCTCATC YpsIP31758_0831 1009232 - 1010356 + | twitching motility protein TERM 975 1010440 - 1010413 - T 100 -15 -4.20783 | AGGTGATGCAATAAA TTAACCCGGATC GGAT GATCCGGGTCAA GCAGGCGGCTTATTT aguA 1011562 - 1010465 - | agmatine deiminase aguB 1012468 - 1011584 - | N-carbamoylputrescine amidohydrolase TERM 976 1012510 - 1012496 - R 95 -5.7 -5.59564 | ATAAATGTAAAAAAA CACCT GCAAG AGGTG TGCAATATTTTAAAC YpsIP31758_0834 1013070 - 1012648 - | Holliday junction resolvase-like protein YpsIP31758_0835 1013633 - 1013070 - | hypothetical protein gshB 1014708 - 1013749 - | glutathione synthetase rsmE 1015465 - 1014734 - | hypothetical protein TERM 977 1015268 - 1015286 + g 74 -3.8 -4.9725 | opp_overlap 1015280 CCATTGCCCTTCAGC GAGTCGGA CAA TCAGATTC TTTTTATCTGCCCGT YpsIP31758_0838 1015729 - 1015574 - | hypothetical protein endA 1016415 - 1015708 - | endonuclease I TERM 978 1016178 - 1016197 + g 80 -4.2 -5.31456 | gap 1, opp_overlap 1016178, overlap 1016181 1016183 CATGTTCCCATTCAA T-CCGCGCG GCT CGCGCTGCA TTTTTTCTGGGTTGA TERM 979 1016181 - 1016193 + g 72 -10.5 -2.96157 | opp_overlap 1016178, overlap 1016178 1016183 GTTCCCATTCAATCC GCGCG GCT CGCGC TGCATTTTTTCTGGG sprT 1017025 - 1016513 - | hypothetical protein TERM 980 1017140 - 1017174 + r 78 -10.6 -3.37533 | opp_overlap 1017142, overlap 1017134 1017142 GGGTGCATACAAATA AACCCCCCTGCCAGCG TGT TGCTTACAGGGGGGTC TTCATCGTTTTACCG TERM 981 1017172 - 1017142 - R 100 -14.7 -4.62441 | opp_overlap 1017140 1017134 1017142 GTGCATACAAATAAA CCCCCCTGCCAGC GTGTT GCTTACAGGGGGG TCTTCATCGTTTTAC TERM 982 1017142 - 1017172 + r 100 -13.2 -3.25111 | opp_overlap 1017142, overlap 1017140 1017134 GTGCATACAAATAAA CCCCCCTGCCAGCG TGT TGCTTACAGGGGGG TCTTCATCGTTTTAC metK 1018371 - 1017217 - | S-adenosylmethionine synthetase YpsIP31758_0842 1018830 - 1018949 + | hypothetical protein speA 1019578 - 1021557 + | arginine decarboxylase TERM 983 1021588 - 1021607 + F 100 -8.6 -5.40072 | opp_overlap 1021588 TCAGTATCGATTAAA GGGCAAAC TCAG GTTTGTCC TTTTTTTCGGCGCGA YpsIP31758_0844 1021717 - 1022037 + | Rieske family iron-sulfur cluster-binding protein TERM 984 1022089 - 1022116 + T 80 -9.8 -3.62046 | opp_overlap 1022076 1022090, overlap 1022090 AACGTCAGCTACAGA ACTCACGCCCCA ACAG TGGGGAGTGAGG TTATTGACAAAGTGC TERM 985 1022090 - 1022115 + T 93 -13.3 -2.77013 | opp_overlap 1022076 1022090, overlap 1022089 ACGTCAGCTACAGAA CTCACGCCCCA ACAG TGGGGAGTGAG GTTATTGACAAAGTG TERM 986 1022115 - 1022090 - T 100 -13.3 -3.52102 | opp_overlap 1022089 1022090, overlap 1022076 ACGTCAGCTACAGAA CTCACGCCCCA ACAG TGGGGAGTGAG GTTATTGACAAAGTG TERM 987 1022189 - 1022215 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1022178, overlap 1022184 1022190 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 988 1022190 - 1022216 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1022178, overlap 1022184 1022189 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 989 1022274 - 1022302 + T 72 -9.6 -3.14564 | gap 1, overlap 1022277 GGGGTTTGTCAGCAG T-CTGACGCCCCA ACAG TGGGGCGTCTGCA TTGATAAGAGACTGG TERM 990 1022277 - 1022298 + T 100 -15.9 -2.56596 | overlap 1022274 GTTTGTCAGCAGTCT GACGCCCCA ACAG TGGGGCGTC TGCATTGATAAGAGA YpsIP31758_0845 1023079 - 1022327 - | M48 family peptidase TERM 991 1022459 - 1022473 + g 88 -7 -5.0133 | GGTTACCAGACCGTT CGGGTC AAT GCCCCG TTTTTTCAGCAAATC YpsIP31758_0846 1023115 - 1023243 + | hypothetical protein TERM 992 1023379 - 1023389 + F 71 -4.6 -4.63218 | ATGGTTTGTCGCTGT GCGG TGG CTGC TTTTGTTCACCCCAA tkt 1023553 - 1025547 + | transketolase TERM 993 1025625 - 1025598 - f 75 -5.6 -4.58663 | ATTAGCCGTTAAAAA GTCATTAACTGT TAAA ACAGGCAACGAC GTTATCAATACTGCA TERM 994 1025703 - 1025688 - f 91 -10.4 -4.09864 | opp_overlap 1025688 ATGCACCTGTTAAAA GACCGC TTTT GCGGTC TTTTTTTTGACTAAT TERM 995 1025688 - 1025703 + F 100 -10.4 -5.82316 | opp_overlap 1025688 ATGCACCTGTTAAAA GACCGC TTTT GCGGTC TTTTTTTTGACTAAT TERM 996 1025746 - 1025756 + F 70 -5.4 -4.49344 | overlap 1025733 1025740 TGTGCCCTTTTTCAG GGAA ATA TTCC TTTTATCATGACTTT TERM 997 1025861 - 1025840 - f 73 -5.8 -4.42653 | opp_overlap 1025841, overlap 1025841 1025842 ATCCCACCGAGAAAA CCCGGCCA GTATTA TGGCCGAA TTGTGATAATACGAT epd 1025944 - 1026960 + | erythrose 4-phosphate dehydrogenase TERM 998 1027609 - 1027591 - g 100 -16 -3.56568 | opp_overlap 1027583 1027580 1027608 GAAGCATTGGGTAAA GCGCTGGG TAA CCCAGCGC GTCCAATGGTTGCTA TERM 999 1027985 - 1027970 - g 78 -7.6 -4.31329 | opp_overlap 1027978 TGAAAAATGCCAAAA CCATTC TGTG GAATGG TCCGGTTGGTGTGTT pgk 1027063 - 1028226 + | phosphoglycerate kinase fbaA 1028346 - 1029425 + | fructose-bisphosphate aldolase TERM 1000 1029446 - 1029473 + F 100 -20 -3.62046 | opp_overlap 1029453, overlap 1029453 GTCTGTTCGGACTGA CCTCAAAGGCCC TACG GGGCCTTTGAGG TTATTGACAAAGTGC TERM 1001 1029466 - 1029453 - f 78 -9.5 -3.61178 | opp_overlap 1029446 1029453 CGGACTGACCTCAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 1002 1029453 - 1029466 + F 78 -9.5 -3.72051 | opp_overlap 1029453, overlap 1029446 CGGACTGACCTCAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 1003 1029546 - 1029572 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 1029535, overlap 1029541 1029547 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1004 1029547 - 1029573 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 1029535, overlap 1029541 1029546 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1005 1029631 - 1029658 + F 82 -10.6 -3.62046 | opp_overlap 1029638, overlap 1029632 1029638 GGGGTTTGTCAGCAG TCTGAAAGGCCC TACG GGGCCTTTGAGG TTATTGACAAAGTGC TERM 1006 1029632 - 1029657 + F 83 -11.9 -2.77013 | opp_overlap 1029638, overlap 1029631 1029638 GGGTTTGTCAGCAGT CTGAAAGGCCC TACG GGGCCTTTGAG GTTATTGACAAAGTG TERM 1007 1029638 - 1029651 + F 78 -9.5 -3.72051 | opp_overlap 1029638, overlap 1029632 1029631 GTCAGCAGTCTGAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 1008 1029651 - 1029638 - f 78 -9.5 -3.58343 | opp_overlap 1029638 1029632 1029631 GTCAGCAGTCTGAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 1009 1029732 - 1029758 + F 72 -7.2 -3.9749 | gap 1, opp_overlap 1029720, overlap 1029731 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 1010 1029823 - 1029836 + F 100 -9.5 -5.30155 | opp_overlap 1029823 GTCAGCAATCTGAAA GGCCC TACG GGGCC TTTTTTCGTTGCTGA TERM 1011 1029836 - 1029823 - f 78 -9.5 -3.67976 | opp_overlap 1029823 GTCAGCAATCTGAAA GGCCC TACG GGGCC TTTTTTCGTTGCTGA TERM 1012 1029976 - 1029995 + F 100 -4.2 -6.09133 | overlap 1029964 GGCCGTTGGCTAGAG TCGCCAGC GTTA GATGGTGA TTTTTTTTTGGCGTA TERM 1013 1030014 - 1030028 + F 100 -7.8 -5.26316 | TTTTTTGGCGTAATT GCTCCT GTA GGGAGC TTTTTTGTAGGATGG TERM 1014 1030598 - 1030627 + G 74 -10.7 -2.79679 | overlap 1030621 1030622 1030623 AGCCGCGAGCCGAAC CGCCGTACCGACA TGAT TGTCGGTGTGGCA TATGATGCCGATATT YpsIP31758_0851 1030049 - 1030918 + | small conductance mechanosensitive ion channel (MscS) family protein TERM 1015 1030953 - 1030968 + F 73 -7.5 -4.20531 | opp_overlap 1030953 GGTAAATAGATTAAA CGGGC CTCAGT GCCCG TTTTGACTCGCTCTG TERM 1016 1030968 - 1030953 - f 72 -7.5 -3.97308 | opp_overlap 1030953 GGTAAATAGATTAAA CGGGC CTCAGT GCCCG TTTTGACTCGCTCTG TERM 1017 1031611 - 1031631 + G 73 -7.5 -4.30001 | overlap 1031608 GCCCTTGGTTTGCTT TAGGGGCGG TCA CGGCCTCTA TTGTTTGGTTTTTTG argO 1031163 - 1031780 + | arginine exporter protein TERM 1018 1032185 - 1032170 - g 77 -6.8 -4.64766 | TGCAGATGCCAAAAA GCAGGT CGAT ACCCGC GTCGCGCAATACTTT YpsIP31758_0853 1031970 - 1032749 + | hypothetical protein TERM 1019 1032765 - 1032733 - T 71 -4.9 -4.64676 | CTACTGCCAATAAAA CAGTTGCTGCTCA GTAAACA TAAACAGCTACTG CCCAATAAACGAGTC iciA 1033668 - 1032760 - | chromosome replication initiation inhibitor protein rpiA2 1034010 - 1034666 + | ribose-5-phosphate isomerase A TERM 1020 1034670 - 1034706 + F 71 -2.2 -5.22039 | overlap 1034661 GTGATTGGCTAAAAT TTTTCAGGGTGTCGTT TATTT GGCTTCACCCTGATAA TTTTTTGCCTTTGAA TERM 1021 1036168 - 1036158 - g 77 -6.8 -4.63542 | GATAATGCGGAAAAA GCCT TGC AGGC GATGAAGGCCATTCC serA 1034973 - 1036214 + | D-3-phosphoglycerate dehydrogenase TERM 1022 1036258 - 1036232 - T 88 -10.8 -3.8901 | opp_overlap 1036228 1036227 CCTGAAATGATTAAA CGCCTGGGATCC ATA GGATCTCAGGTG TGAGGTTATTGACAA TERM 1023 1036337 - 1036363 + T 72 -7.2 -3.9749 | gap 1, opp_overlap 1036325, overlap 1036336 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 1024 1036426 - 1036452 + T 100 -22.4 -6.02914 | TTGTCAGCAGTCTGA CACCGGGGATCC ATA GGATCCCCGGTG TTTTTTTTATCTCGA YpsIP31758_0857 1037075 - 1036479 - | 5,10-methenyltetrahydrofolate synthetase TERM 1025 1036923 - 1036911 - G 80 -9.1 -4.17516 | GTCAAAGGAGAGAAA CACGG CTA CCGTG TGAGCTTGCTGGATT YpsIP31758_0858 1037784 - 1037455 - | Z-ring-associated protein YpsIP31758_0859 1038121 - 1038699 + | hypothetical protein pepP 1038787 - 1040100 + | proline aminopeptidase P II ubiH 1040305 - 1041483 + | 2-octaprenyl-6-methoxyphenyl hydroxylase YpsIP31758_0862 1041656 - 1042876 + | hypothetical protein TERM 1026 1043440 - 1043450 + F 75 -8.2 -3.76167 | opp_overlap 1043439, overlap 1043438 TTGTCGCCTGAAGAG GGCG CCT CGCC TATTTTAGCTTATGG gcvT 1043597 - 1044694 + | glycine cleavage system aminomethyltransferase T gcvH 1044763 - 1045149 + | glycine cleavage system protein H TERM 1027 1045180 - 1045155 - f 71 -9 -3.23979 | overlap 1045150 TGAAGAGTAACTCAA GTGAGGGCCA TTTTAT TGGCCCTGAC GCCGAGTAGGTTAAA gcvP 1045361 - 1048240 + | glycine dehydrogenase TERM 1028 1048282 - 1048257 - f 82 -8.2 -4.26903 | opp_overlap 1048257 1048257, overlap 1048261 CTCATCTGAGCAAAA CCAAGGGCCG TGAAAG CGGCCCTGAG GTTATTGACAAAGTG TERM 1029 1048278 - 1048261 - f 80 -9.8 -3.71672 | opp_overlap 1048257 1048257, overlap 1048257 TCTGAGCAAAACCAA GGGCCG TGAAAG CGGCCC TGAGGTTATTGACAA TERM 1030 1048357 - 1048383 + F 72 -7.2 -3.9749 | gap 1, opp_overlap 1048345, overlap 1048352 1048356 CATCCATGTAGGCTC GAG-CCGCGCC TTCCCT GGCGCGGACGC TTTACTCTTCTGCCT YpsIP31758_0866 1048449 - 1048586 + | hypothetical protein YpsIP31758_0867 1048618 - 1049055 + | hypothetical protein TERM 1031 1049945 - 1049958 + F 70 -5.3 -4.47183 | overlap 1049941 CAACTAGCCGACATT CCATA ATGT TATGG TTTGTTTAGATAATA TERM 1032 1050174 - 1050189 + G 71 -4.8 -4.49981 | opp_overlap 1050174 TGTTTGTTTTAATTA CTTTAT GAAC ATAAAG TTTTATCGTGGTCTG TERM 1033 1050614 - 1050628 + G 70 -10 -3.1506 | CGATTTCATCTACCT CTACCG ATG CGGTAG TTGGTAGCCAGCTTT YpsIP31758_0868 1050115 - 1052265 + | hemagglutination repeat-containing protein YpsIP31758_0869 1052369 - 1053472 + | hypothetical protein YpsIP31758_0870 1053674 - 1054375 + | hemolysin III family protein YpsIP31758_0871 1054684 - 1055181 + | hypothetical protein TERM 1034 1055238 - 1055211 - T 100 -15 -5.23292 | opp_overlap 1055217 1055219 TGATATAAAACAAAA TACAGAGACCGG TTAA CCGGTCTCTATA GAGTAGAACTCTTTA TERM 1035 1055217 - 1055232 + T 75 -10.4 -2.89564 | opp_overlap 1055211, overlap 1055219 AAAACAAAATACAGA GACCGG TTAA CCGGTC TCTATAGAGTAGAAC TERM 1036 1055239 - 1055249 + T 73 -5.4 -4.66814 | TAACCGGTCTCTATA GAGT AGA ACTC TTTATTATTTATCTT YpsIP31758_0872 1056246 - 1055254 - | putative global regulator TERM 1037 1055853 - 1055864 + g 73 -7.2 -4.14739 | ATTCAGTAAAGATTT CCGC CAGC GCGG TTTTGGCCTGGCTAC YpsIP31758_0873 1056562 - 1056828 + | hypothetical protein YpsIP31758_0874 1056809 - 1057234 + | hypothetical protein creB 1057234 - 1057932 + | DNA-binding response regulator CreB TERM 1038 1057999 - 1058016 + G 81 -7.7 -4.51224 | GGCTATTTCCTGATC GTGGCCA TTGC TGGCTAC TTTGTTATTCGTATT creC 1057957 - 1059390 + | sensory histidine kinase CreC TERM 1039 1059921 - 1059940 + G 71 -9.2 -3.55444 | GCTGGCACTGAGTGA TGCGCGGG GTAT CCAGCGCA TTTCGCCACTCAGCG YpsIP31758_0877 1059475 - 1060932 + | hypothetical protein TERM 1040 1060981 - 1060953 - T 84 -9.7 -3.84825 | opp_overlap 1060958, overlap 1060954 CGCAGCTAGACTAAA CTTAACGGGCA TATCGGG TGCCCGTTAAA TTGAGCTCTGATGTA TERM 1041 1060980 - 1060954 - T 79 -11 -2.90573 | opp_overlap 1060958, overlap 1060953 GCAGCTAGACTAAAC TTAACGGGCA TATCGGG TGCCCGTTAA ATTGAGCTCTGATGT fldB 1061535 - 1061017 - | flavodoxin FldB xerD 1061642 - 1062541 + | site-specific tyrosine recombinase XerD dsbC 1062572 - 1063288 + | thiol:disulfide interchange protein DsbC TERM 1042 1063550 - 1063575 + G 79 -11.1 -3.56643 | overlap 1063551 GATGCTGACGGCGCG ACCAGTACCGC GTTG GCGGTGCTGGC TTTGCGCAGTATGGG TERM 1043 1063551 - 1063574 + G 90 -14.6 -2.73771 | overlap 1063550 ATGCTGACGGCGCGA CCAGTACCGC GTTG GCGGTGCTGG CTTTGCGCAGTATGG recJ 1063295 - 1065028 + | ssDNA exonuclease RecJ TERM 1044 1065343 - 1065321 - g 100 -13.4 -4.0802 | ACTGGAAGAAGTAAA CGCCGAGCTG GAA CAGCCCGACG TCTGGAATGAACCCG prfB 1065207 - 1066305 + | peptide chain release factor 2 lysS 1066315 - 1067832 + | lysyl-tRNA synthetase TERM 1045 1067861 - 1067876 + F 100 -11.8 -4.7497 | ACGATAAATTCCTCA GGGCGC TACG GCGCCC TTTTTACTGAGTCAG YpsIP31758_0884 1068265 - 1069479 + | phage integrase family site specific recombinase TERM 1046 1069529 - 1069544 + T 100 -9 -5.19879 | opp_overlap 1069529 TCCAAACTTTTTAAA GGCATC TCAC GATGCC TTTTTGTATTTAGAG TERM 1047 1069544 - 1069529 - T 75 -9 -3.5936 | opp_overlap 1069529 TCCAAACTTTTTAAA GGCATC TCAC GATGCC TTTTTGTATTTAGAG YpsIP31758_0885 1069746 - 1069561 - | hypothetical protein YpsIP31758_0886 1069972 - 1069847 - | hypothetical protein TERM 1048 1070081 - 1070054 - H 80 -10.5 -3.54424 | TCTCAGGCTGCTAAA CCCAGCAACGG ATTTTG CCGCTGCGGGG GCACTATATCTGACC YpsIP31758_0887 1070667 - 1071029 + | helix-turn-helix DNA binding domain-containing protein TERM 1049 1071154 - 1071140 - f 70 -7.2 -3.87075 | opp_overlap 1071138 1071140, overlap 1071113 ATGACTTGCTATAAA TAACCT ACT AGGTTA TATTTATTAAGTGGA YpsIP31758_0888 1071193 - 1071495 + | hypothetical protein YpsIP31758_0889 1071495 - 1071893 + | putative transcriptional regulator TERM 1050 1072111 - 1072142 + T 71 -4.4 -4.7497 | TCTGAATACTCCCCG CTGAACTCTTCAGC AACT GTTCAGGTGTTCAG TTTTTAATACCTGCC TERM 1051 1072221 - 1072187 - T 93 -12.4 -3.04248 | opp_overlap 1072187 GAACACCTCTGAATA CTGACTGAACAGTT ATTAGTA AACTATTCAGTCAG TTTTTATCTTTGTAT TERM 1052 1072187 - 1072221 + T 100 -10.2 -5.26155 | opp_overlap 1072187 GAACACCTCTGAATA CTGACTGAACAGTT ATTAGTA AACTATTCAGTCAG TTTTTATCTTTGTAT YpsIP31758_0890 1074584 - 1072293 - | D5 family nucleoside triphosphatase TERM 1053 1072392 - 1072403 + g 79 -2.2 -5.5208 | GTAGCGGAACCCTTT GTCA GTTC TGGC TTTTTTGTATTCTGC TERM 1054 1072543 - 1072529 - G 73 -7 -4.17296 | overlap 1072530 CGTGATACAGATAAA TGCGCG GGG CGCGCG GGGAAATTGCCAGCG TERM 1055 1072542 - 1072530 - G 73 -10.5 -3.09896 | overlap 1072529 GTGATACAGATAAAT GCGCG GGG CGCGC GGGGAAATTGCCAGC TERM 1056 1074792 - 1074830 + H 74 -6.6 -4.2828 | opp_overlap 1074796, overlap 1074780 1074796 TTGCTCCGTGGTGGA TAAACGCCCCGGCAGTAT TGA GTGATGTCGGGGCGTTCC TTTTGATACATCCGC TERM 1057 1074796 - 1074826 + H 93 -11.8 -3.72073 | opp_overlap 1074796, overlap 1074780 1074792 TCCGTGGTGGATAAA CGCCCCGGCAGTAT TGA GTGATGTCGGGGCG TTCCTTTTGATACAT TERM 1058 1075156 - 1075143 - g 78 -5.2 -5.00616 | TTGTGGTGCAAAAAA CGGC TTATAT GCCG TGGAAAGAGAAAGGC YpsIP31758_0891 1074884 - 1075210 + | hypothetical protein YpsIP31758_0892 1075203 - 1075355 + | hypothetical protein YpsIP31758_0893 1075569 - 1075369 - | AlpA family protein TERM 1059 1075434 - 1075485 + g 74 -6.6 -4.40993 | gap 1, opp_overlap 1075439 TCACCTCACTTTCAA CAAAAGCGATAGCCCGCCCCC CTATTTTTATC GGTGGCGGGA-AGCGCTTTTG TTTTAATAATTTATA TERM 1060 1075670 - 1075657 - R 75 -3.1 -5.18866 | opp_overlap 1075657, overlap 1075652 GGCAAATAAATAAAA GGAAC CTTT ATTCC TGTCGTTTTAGGTCA YpsIP31758_0894 1076431 - 1075751 - | hypothetical protein YpsIP31758_0895 1076809 - 1076444 - | hypothetical protein YpsIP31758_0896 1077078 - 1078220 + | Fic family protein TERM 1061 1079953 - 1079934 - g 80 -6.5 -4.7373 | CTATCTCAGTAAAAA TCCAGAT GATCCT ATCTGGA CTGAAAGAAAGAAAA YpsIP31758_0897 1078699 - 1080231 + | PAAR/S-type pyocin domain-containing protein TERM 1062 1080390 - 1080373 - T 70 -2.7 -4.93877 | gap 1, overlap 1080376 GTGGAGCAAATAAAA TGAGCCTC AAC GAAGC-CA AAGAAGCCTACAAGC YpsIP31758_0898 1080576 - 1080463 - | hypothetical protein YpsIP31758_0899 1081009 - 1081332 + | hypothetical protein TERM 1063 1082420 - 1082436 + GF 72 -7.9 -3.76835 | AGTTCTCAAGCATGG GTCGCAG AAA CAGCGAC TTATATGTTGTTCCG TERM 1064 1083273 - 1083263 - gf 75 -3.2 -5.11836 | ATACTCAAAACAAAA GCTC AAA AAGC ACTTTTACAACAGCA YpsIP31758_0900 1081730 - 1083901 + | hypothetical protein TERM 1065 1084120 - 1084109 - gf 72 -5.8 -4.36914 | overlap 1084111 CCTGGTTTCAGAAAA TGGG GCTA CCCA GCTCTAGGCTGACAC YpsIP31758_0901 1083871 - 1084638 + | hypothetical protein TERM 1066 1084880 - 1084909 + F 72 -7.3 -3.96618 | overlap 1084883 AATCATGATTTGGTT GAATATTCCTACA TTCT TGTGTGAATATTC TTATTTGAAGTTGCG YpsIP31758_0902 1085244 - 1086023 + | hypothetical protein YpsIP31758_0903 1086240 - 1086545 + | PAAR domain-containing protein YpsIP31758_0904 1086964 - 1086644 - | hypothetical protein YpsIP31758_0905 1087644 - 1086964 - | PadR family transcriptional regulator TERM 1067 1087053 - 1087077 + g 76 -9.4 -3.80733 | gap 1 TGTCTACCGCAGCCA GTAGCGCCGTA TTAA TACG-CGCTAC TTGTTCTGGCGTGAG TERM 1068 1087765 - 1087747 - R 75 -7.4 -4.27861 | opp_overlap 1087747 1087758, overlap 1087748 AAGATATATCTAAAA CGCGTTAC TGC GCAACGCA TCCCGCGTGCTTTTA TERM 1069 1087890 - 1087877 - R 77 -3.9 -5.21709 | overlap 1087888 GGGGATATCAAAAAA TGATT TTTA AATCA AAATGTTGAACTGGG TERM 1070 1087929 - 1087953 + r 75 -8.6 -3.90762 | overlap 1087927 ATTTTGGTCAAGGGG GGCTGAGTGA CAATA TCAGTCAGCC TATTTTTGCCCGCTA TERM 1071 1088080 - 1088068 - R 74 -4.8 -4.82901 | opp_overlap 1088038 CCCTTCTGATAAAAA GGTG AGCAG CACC AAACGGTTATTGGCT YpsIP31758_0906 1088944 - 1088087 - | hypothetical protein YpsIP31758_0907 1089838 - 1089320 - | hypothetical protein TERM 1072 1090524 - 1090498 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 1090507, overlap 1090499 1090514 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1073 1090525 - 1090499 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 1090507, overlap 1090498 1090514 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1074 1090591 - 1090619 + G 74 -11.1 -3.09452 | opp_overlap 1090598, overlap 1090598 GTCGCGGGCACTTTG TCAATAACCTCAG TTA CTGAGGTTGATGA TATCTCTTAACGACT TERM 1075 1090598 - 1090612 + G 73 -10 -3.27661 | opp_overlap 1090598, overlap 1090591 GCACTTTGTCAATAA CCTCAG TTA CTGAGG TTGATGATATCTCTT TERM 1076 1090612 - 1090598 - g 76 -10 -3.62046 | opp_overlap 1090598 1090591 GCACTTTGTCAATAA CCTCAG TTA CTGAGG TTGATGATATCTCTT YpsIP31758_0908 1090513 - 1090629 + | hypothetical protein TERM 1077 1090767 - 1090740 - T 100 -12.7 -3.57792 | opp_overlap 1090757 GGATTTACCCTCAAA CCCGACAGCAG ATTTTG CCGCTGCCGGG GGCGATAGCGATCAT rbsB1 1091789 - 1090788 - | ribose ABC transporter, periplasmic ribose-binding protein TERM 1078 1091751 - 1091779 + g 79 -2.3 -5.52384 | overlap 1091754 AAAGGAAAGTATCAG CGTTGCAGCAAGC AGA GTTTGTAGCATTG TTTTTTTCATAAAAG TERM 1079 1091754 - 1091776 + g 77 -4.8 -4.8487 | overlap 1091751 GGAAAGTATCAGCGT TGCAGCAAGC AGA GTTTGTAGCA TTGTTTTTTTCATAA YpsIP31758_0910 1092078 - 1092203 + | hypothetical protein rbsC1 1093251 - 1092223 - | ribose ABC transporter, permease protein rbsA1 1094806 - 1093298 - | ribose ABC transporter, ATP-binding protein TERM 1080 1095270 - 1095292 + r 73 -9.1 -3.46509 | overlap 1095264 CTATCTTAATATTCA GCGGGCTTC AACAG GAAACCCGC TTGGTATTCTTAACC malK1 1096451 - 1095345 - | maltose/maltodextrin ABC transporter, ATP-binding protein malE1 1096814 - 1098049 + | maltose/maltodextrin ABC transporter, periplasmic maltose/maltodextrin-binding protein TERM 1081 1099110 - 1099120 + G 77 -4.6 -4.87389 | TGATGCAGACGTGGC TGGG TTT CCCG TTTGTTTTTGCCATG YpsIP31758_0915 1098209 - 1099516 + | ABC maltose/maltodextrin transporter, permease subunit YpsIP31758_0916 1099528 - 1100379 + | ABC maltose/maltodextrin transporter, permease subunit YpsIP31758_0917 1100384 - 1101586 + | glycosy hydrolase family protein TERM 1082 1101608 - 1101588 - f 83 -11.9 -2.60571 | opp_overlap 1101583, overlap 1101587 AAGTTTTTAATTAAT CGTTGCCCA TTA TGGGCAACA CCAAGTATTTATTAT TERM 1083 1102845 - 1102858 + G 78 -5.3 -4.8622 | AAGTAAAGTAGACGC TGATG TTGC CATCA TTTTTGATTGGGAAA TERM 1084 1103238 - 1103207 - g 73 -7.4 -4.15044 | gap 1, overlap 1103236 TCTGGTCCGAAGAAA TTGACTG-TCTGGCC GAT GGCGAGAGCAATCAA GTCCAAGGGCTTGCA TERM 1085 1103516 - 1103550 + G 73 -7.8 -3.99324 | overlap 1103520 AGTTCCCTTATGGGG TTACCGCTCACCGTCG TAC CGATGGTGAGAGTGAA TTTATCGTGGTAGAA TERM 1086 1103520 - 1103546 + G 81 -13 -2.7242 | overlap 1103516 CCCTTATGGGGTTAC CGCTCACCGTCG TAC CGATGGTGAGAG TGAATTTATCGTGGT YpsIP31758_0918 1101637 - 1103697 + | beta-galactosidase TERM 1087 1103719 - 1103740 + F 100 -12.3 -5.47218 | opp_overlap 1103719 ACTGAATGCCATACA CGCCCATTC AGCC GAGTGGGCG TTTTTTTACATCGAC TERM 1088 1103740 - 1103719 - f 73 -10.1 -2.9186 | opp_overlap 1103719 ACTGAATGCCATACA CGCCCATTC AGCC GAGTGGGCG TTTTTTTACATCGAC YpsIP31758_0919 1103809 - 1104120 + | PTS system, EIIB component TERM 1089 1104145 - 1104174 + T 78 -4.4 -5.09259 | overlap 1104148 TTTTAACTCACAATT TGGCTTTAAAGC AATTTG GCTTTAAAGTGA TTTTGTTTTAAAGTA TERM 1090 1104346 - 1104321 - T 100 -16.3 -4.73108 | GGTATAAAACTAAAA TGCTCACTACC TAAG GGTAGTGAGCA TAGAAGAATAACCGA YpsIP31758_0920 1105784 - 1104525 - | maltoporin YpsIP31758_0921 1105916 - 1106035 + | hypothetical protein YpsIP31758_0922 1106056 - 1107129 + | lac repressor TERM 1091 1107229 - 1107208 - T 100 -15.9 -4.96501 | overlap 1107225 CCGTACAAAAATAAA CGGGCTTCC ATCA GGAAGCCCG TCAGACTGCTGACAA YpsIP31758_0923 1107305 - 1107189 - | hypothetical protein TERM 1092 1107319 - 1107293 - G 85 -10.1 -3.98282 | gap 1, overlap 1107294 1107307 1107309 1107310 GGCAGAGGAAGTAAA GCGTCCGCGCCA AAGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1093 1107320 - 1107294 - G 72 -10.1 -2.98487 | gap 1, overlap 1107293 1107307 1107309 1107310 GCAGAGGAAGTAAAG CG-TCCGCGCCA AAGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1094 1107396 - 1107421 + rH 84 -9.7 -3.84017 | opp_overlap 1107393, overlap 1107398 CTTTGTCAATAACCT CACGGGCTTCC ATCA GGAAGTCCGTC TTGTATTTAACATTA TERM 1095 1107398 - 1107419 + rH 100 -12.3 -3.49634 | opp_overlap 1107393, overlap 1107396 TTGTCAATAACCTCA CGGGCTTCC ATCA GGAAGTCCG TCTTGTATTTAACAT YpsIP31758_0924 1109817 - 1107442 - | glycosy hydrolase family protein YpsIP31758_0925 1109786 - 1109902 + | hypothetical protein YpsIP31758_0926 1111273 - 1109966 - | putative hexuronate transporter TERM 1096 1110826 - 1110844 + g 70 -2.3 -5.00616 | overlap 1110819 1110829 CCACCCCAGCCCATC CAGCGGC AATGG GCCGTTC TTTTTTCGGGAACCA TERM 1097 1110829 - 1110841 + g 75 -6.2 -4.61482 | overlap 1110819 1110826 CCCCAGCCCATCCAG CGGC AATGG GCCG TTCTTTTTTCGGGAA TERM 1098 1111410 - 1111428 + H 82 -3.2 -5.56264 | opp_overlap 1111410 GCGATATAAAATATA CTCAAT TGATAAT ATTGAG TTTTTTATATTTCAA TERM 1099 1111723 - 1111697 - g 73 -8.8 -3.8691 | overlap 1111695 AAAATACAAGAAATA GCTAATCAAACG GGT CTTTCGATTAGC ACGGTATCAAGAGTG TERM 1100 1112035 - 1112013 - g 75 -6.2 -4.53303 | overlap 1112016 TATTCTTAGATAAAA TGACCCACCC ACA GAGTGAGGCA GCGATTATTATTGGC YpsIP31758_0927 1111667 - 1112749 + | LacI family sugar-binding transcriptional regulator TERM 1101 1112864 - 1112838 - T 95 -13.1 -3.05844 | opp_overlap 1112844, overlap 1112840 1112844 TTGGGGAGTCGAAGA GACGAACCGCA GACCA TGCGGTTCATC AACGGTACTGGCTAT TERM 1102 1112862 - 1112840 - T 74 -9.9 -3.08813 | opp_overlap 1112844, overlap 1112838 1112844 GGGGAGTCGAAGAGA CGAACCGCA GACCA TGCGGTTCA TCAACGGTACTGGCT YpsIP31758_0928 1113568 - 1112990 - | DJ-1/PfpI family protein TERM 1103 1113394 - 1113423 + g 74 -9.9 -3.57792 | opp_overlap 1113403 GGTGATCCAGACGAT CGCTTAACAGCGC ATCT GCGCTGATCGGCG TTTCAAAATAGGTGC YpsIP31758_0929 1114446 - 1113592 - | tagatose-bisphosphate aldolase YpsIP31758_0930 1116044 - 1114557 - | hypothetical protein YpsIP31758_0931 1117774 - 1116167 - | sulfatase TERM 1104 1116211 - 1116229 + g 91 -11 -4.36903 | GATAGCGATCTTGCC CCCAAGCC ACG GGTTTGGG TTTATCTTTGATCCA TERM 1105 1117229 - 1117245 + g 71 -6.5 -4.15565 | GACGGAGATCATGTT GTCGTGA TAA TCGCGGC TTTTGACCTCATCGG TERM 1106 1117583 - 1117597 + g 80 -4.2 -5.25803 | overlap 1117568 1117564 1117579 GCGCACGGGAACTGG GCGCTG GCT TAGTGC TTTTTTATCCAGATT YpsIP31758_0932 1119021 - 1117795 - | putative sulfatase regulator TERM 1107 1118708 - 1118720 + g 71 -6.3 -4.24404 | opp_overlap 1118708 1118707 CCGTTGGTTTGAAAG CTGTT TGT AACAG TTTTACCGTTTGCAT TERM 1108 1119192 - 1119173 - H 100 -12.2 -5.24531 | ATCGCCTATAAAAAA CGCACATC AGGT GATGTGCG CCAGACTGCTGACAA TERM 1109 1119281 - 1119255 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 1119264, overlap 1119256 1119271 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1110 1119282 - 1119256 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 1119264, overlap 1119255 1119271 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1111 1119383 - 1119356 - g 71 -10.6 -2.77013 | overlap 1119355 CACTTTGTCAATAAC CTCACGCACATC AGGT GATGTGCGCCAG TGCAACAAAATGAAT YpsIP31758_0934 1119270 - 1119455 + | hypothetical protein YpsIP31758_0933 1120510 - 1119452 - | glycosy hydrolase family protein TERM 1112 1119701 - 1119686 - G 77 -6.8 -4.63932 | opp_overlap 1119690 CAGCCCGTAACAAAA CAGCGC TGTT GCACTG CTCTCTGGGGCAGGA kduD2 1121281 - 1120526 - | 2-deoxy-D-gluconate 3-dehydrogenase YpsIP31758_0936 1122643 - 1121477 - | putative N-acetylgalactosamine-6-phosphate deacetylase TERM 1113 1122265 - 1122255 - G 74 -6.8 -4.36914 | GGCCCCTCCAGAAAA CTGC CGA GCAG GGTTGCGGTGCGGGT agaF 1123086 - 1122646 - | PTS system, N-acetylgalactosamine-specific IIA component agaE 1124062 - 1123172 - | PTS system, N-acetylgalactosamine-specific IID component TERM 1114 1123817 - 1123836 + g 77 -6.4 -4.63218 | opp_overlap 1123816, overlap 1123819 CGATTTCGCCAAATC TGCACGGT TGTT ACCGTGGA TTTTCTTCAACGCGG agaW 1124840 - 1124052 - | PTS system, N-acetylgalactosamine-specific IIC component agaV 1125384 - 1124887 - | PTS system, N-acetylgalactosamine-specific phosphotransferase enzyme IIB component2 YpsIP31758_0941 1126568 - 1125402 - | putative tagatose-6-phosphate ketose/aldose isomerase AgaS TERM 1115 1126409 - 1126391 - G 72 -5.8 -4.41633 | overlap 1126388 1126392 CACCGGTAAAAATAA TCCGCGTG TTA CTCGCGGC TAATGCCTGATGCAG agaZ 1127863 - 1126565 - | D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit TERM 1116 1127553 - 1127579 + g 82 -10.2 -3.79747 | overlap 1127554 GCATGCGCCATGGCT TCGTTGGCAG GCAAGTG CTGCCAACGG TTTGGTCCTAAATGG TERM 1117 1127554 - 1127578 + g 76 -11.5 -2.87527 | overlap 1127553 CATGCGCCATGGCTT CGTTGGCAG GCAAGTG CTGCCAACG GTTTGGTCCTAAATG agaR 1128689 - 1127913 - | transcriptional repressor AgaR YpsIP31758_0944 1129100 - 1128972 - | hypothetical protein YpsIP31758_0945 1129529 - 1131082 + | sulfatase TERM 1118 1131104 - 1131133 + T 100 -14.5 -3.44206 | gap 1 ATCGACGGCTGACTT CCTCTTCCTGA-CA ATC TGCTCAGGAAGAGG TTATCGTGGATCTTG TERM 1119 1131288 - 1131273 - T 100 -11.8 -4.43681 | GACGTAATAGTAAAA GGGCGC CTAA GCGCCC GCAGACTGCTGACAA TERM 1120 1131377 - 1131351 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1131360, overlap 1131352 1131367 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1121 1131378 - 1131352 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1131360, overlap 1131351 1131367 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1122 1131446 - 1131480 + T 79 -7.9 -4.33274 | gap 1, opp_overlap 1131451 1131452, overlap 1131448 1131452 CGCGGGCACTTTGTC AATAACCTCAGGGCGC CGAA GCGCCCTGA-GTCATG TTTTAATCATGTAAC TERM 1123 1131448 - 1131478 + T 86 -10.5 -3.76811 | gap 1, opp_overlap 1131451 1131452, overlap 1131446 1131452 CGGGCACTTTGTCAA TAACCTCAGGGCGC CGAA GCGCCCTGA-GTCA TGTTTTAATCATGTA TERM 1124 1131476 - 1131451 - T 100 -14.7 -3.62046 | opp_overlap 1131448 1131446 1131452, overlap 1131452 GCACTTTGTCAATAA CCTCAGGGCGC CGAA GCGCCCTGAGT CATGTTTTAATCATG TERM 1125 1131452 - 1131475 + T 100 -18.2 -2.96723 | opp_overlap 1131452 1131451, overlap 1131448 1131446 CACTTTGTCAATAAC CTCAGGGCGC CGAA GCGCCCTGAG TCATGTTTTAATCAT TERM 1126 1131475 - 1131452 - T 100 -18.2 -2.77013 | opp_overlap 1131448 1131446 1131452, overlap 1131451 CACTTTGTCAATAAC CTCAGGGCGC CGAA GCGCCCTGAG TCATGTTTTAATCAT YpsIP31758_0946 1134596 - 1131522 - | polysaccharide lyase family protein 8 TERM 1127 1132400 - 1132380 - G 76 -9.1 -3.87149 | opp_overlap 1132379 1132380 CGCATCAAATTTAAA GGCAAACAT GCC ATATTTGCC ACTTAGTGATGAGTG YpsIP31758_0947 1136891 - 1134705 - | putative autotransporter protein YpsIP31758_0948 1137956 - 1137006 - | hypothetical protein YpsIP31758_0949 1138747 - 1138559 - | hypothetical protein YpsIP31758_0950 1139320 - 1139997 + | putative carbonic anhydrase YpsIP31758_0951 1140740 - 1141156 + | hypothetical protein TERM 1128 1141257 - 1141247 - g 85 -5.4 -5.30189 | overlap 1141239 GATAAGACTAAAAAA TCCT TTT AGGA CACTCAACTGTAATC YpsIP31758_0952 1141224 - 1141727 + | general secretion pathway protein C-like protein TERM 1129 1141835 - 1141850 + G 90 -2.6 -5.8187 | gap 1, opp_overlap 1141835, overlap 1141837 GGCAAAGGAATTAAA TCTATCC ATG GGAT-GA TTTTTTTATTCACTC gspD 1141808 - 1143730 + | general secretion pathway protein D TERM 1130 1144166 - 1144156 - g 80 -4 -5.24129 | opp_overlap 1144156 TCTTTCGATAAAAAA CTTA CTG TAAG ATTTCGTATTGATGG gspE 1143727 - 1145238 + | general secretory pathway protein E gspF 1145225 - 1146427 + | general secretion pathway protein F TERM 1131 1146650 - 1146667 + G 76 -9.9 -3.76224 | GGATTATCCGACCGA GCAGCAA GGCA TTGCTGC TTTAGTAACTAAACC gspG 1146447 - 1146884 + | general secretion pathway protein G gspI 1147469 - 1147813 + | general secretion pathway protein I gspJ 1147806 - 1148402 + | general secretion pathway protein J gspK 1148411 - 1149367 + | general secretion pathway protein K gspL 1149372 - 1150541 + | general secretion pathway protein L YpsIP31758_0961 1150538 - 1150999 + | hypothetical protein YpsIP31758_0963 1151034 - 1151867 + | type IV prepilin peptidase YpsIP31758_0962 1152216 - 1151851 - | putative lipoprotein TERM 1132 1153058 - 1153042 - g 71 -6.7 -4.15703 | opp_overlap 1153042 1153040 TTGGATAAAGAACAA GATAAAA CGT TTTTATC TGTTTATCAGCAACA YpsIP31758_0964 1152502 - 1153161 + | transcriptional regulator YpsIP31758_0965 1153218 - 1153619 + | hypothetical protein TERM 1133 1155433 - 1155403 - g 100 -9.1 -4.84359 | overlap 1155405 TTACCTGTAGAAAAA TACTCTCCTCTAC GATTA GCAAAGGAGAGCA CGATTGCTGCTATTG TERM 1134 1155431 - 1155405 - g 81 -9.5 -4.04397 | overlap 1155403 ACCTGTAGAAAAATA CTCTCCTCTAC GATTA GCAAAGGAGAG CACGATTGCTGCTAT tsr 1153774 - 1155465 + | methyl-accepting chemotaxis protein YpsIP31758_0966 1156086 - 1155451 - | hypothetical protein YpsIP31758_0968 1157086 - 1156199 - | metallo-beta-lactamase family protein YpsIP31758_0969 1157193 - 1158101 + | LysR family substrate binding transcriptional regulator YpsIP31758_0971 1158470 - 1159630 + | major facilitator transporter lysR 1160568 - 1159627 - | DNA-binding transcriptional regulator LysR TERM 1135 1161039 - 1161025 - g 75 -11.4 -2.64155 | opp_overlap 1161022, overlap 1161022 1161021 TTTGGGTGAAATCGA GCGTGC CTT GCACGC GGGTTATCAACCGGG lysA 1160783 - 1162045 + | diaminopimelate decarboxylase galR 1163064 - 1162042 - | DNA-binding transcriptional regulator GalR YpsIP31758_0974 1163414 - 1165675 + | molybdopterin oxidoreductase TERM 1136 1165992 - 1166009 + F 100 -11.3 -5.81412 | TTTTATTTGCACCGA CCTACGC AGAT GCGTAGG TTTTTTTTAGGTACG aas 1166123 - 1168279 + | bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase TERM 1137 1169078 - 1169099 + G 90 -10.1 -4.38712 | gap 1, overlap 1169079 CGATTGGGATTGTGG TGGGCG-CGG GTG CCGCCGCCCG TTTTGTGACGCTAAA TERM 1138 1169079 - 1169098 + G 79 -11.4 -3.22906 | gap 1, overlap 1169078 GATTGGGATTGTGGT GGGCG-CGG GTG CCGCCGCCC GTTTTGTGACGCTAA YpsIP31758_0976 1168276 - 1169496 + | hypothetical protein TERM 1139 1169553 - 1169502 - T 83 -11.8 -2.69964 | gap 1, opp_overlap 1169523, overlap 1169520 GCCTGAATGATATGA TTTGTCTGTCATCTGAAAGGATCTC AAG GAGATCC-TTCAGACTGCTGACAAA TATCGCCTTTTGAAA TERM 1140 1169536 - 1169520 - T 84 -10.9 -3.59979 | opp_overlap 1169523, overlap 1169502 GTCTGTCATCTGAAA GGATCTC AAG GAGATCC TTCAGACTGCTGACA YpsIP31758_0977 1169758 - 1169525 - | hypothetical protein YpsIP31758_0978 1169837 - 1170088 + | hypothetical protein TERM 1141 1170247 - 1170218 - T 100 -16.5 -3.02511 | GGTATTTTGTCAATA CCCTGAAGGCCGC ATCA GCGGCCTTCAGAA TGCTGACAAACCCCG TERM 1142 1170330 - 1170304 - T 70 -7.2 -3.74872 | gap 1, opp_overlap 1170313, overlap 1170305 AGGCAGGGGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG TERM 1143 1170410 - 1170425 + T 91 -11.8 -3.43203 | opp_overlap 1170405 1170404 TGTCAATAACCTCAA GGCCGC ATCA GCGGCC TTCATATTATGATAG tas 1171505 - 1170465 - | putative aldo-keto reductase TERM 1144 1170617 - 1170606 - G 73 -7.2 -4.16842 | overlap 1170607 CGTACTGGCAACAAA CGGC TGTT GCCG CACAAAGGCCAGAGC TERM 1145 1171268 - 1171280 + g 73 -10.5 -3.1733 | overlap 1171266 1171265 CTAAAATAATTTTTT CGCGG CAA CCGCG TGCTTTTATCCAGCG TERM 1146 1171770 - 1171790 + r 77 -8.3 -3.96298 | AGATATAAAGCACCT GCGGGAT AGAGAAC ATCCCGC TTTAATTAATCACTA mutH 1172562 - 1171876 - | DNA mismatch repair protein TERM 1147 1172271 - 1172298 + g 73 -5.6 -4.49389 | gap 1 TCCCGGTGAGTGGTG CCAC-GCAGACGA ATG TCGTTTCCAGTGG TTTTCCTTGTGCACT TERM 1148 1172817 - 1172831 + H 73 -3.5 -5.08011 | CTGGTTCAATTTACA GCCTT GACGA GAGGC TTTTTTGCGAGTTTT TERM 1149 1172840 - 1172850 + H 81 -5.4 -5.10497 | GAGAGGCTTTTTTGC GAGT TTT ACTC TTTTTTGCGTAACTT nudH 1173259 - 1173786 + | dinucleoside polyphosphate hydrolase TERM 1150 1173959 - 1173989 + G 78 -12.5 -2.62983 | opp_overlap 1173978 1173979, overlap 1173987 GTTACTACCTAATGG CGACCAGGGGGCT GAAAA AGCCCCGTGGGCG TACTATCACGCTGGC TERM 1151 1173988 - 1173978 - g 83 -8.2 -4.57073 | opp_overlap 1173959 1173987, overlap 1173979 CAGGGGGCTGAAAAA GCCC CGT GGGC GTACTATCACGCTGG ptsP 1173799 - 1176045 + | fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain lgt 1176296 - 1177168 + | prolipoprotein diacylglyceryl transferase TERM 1152 1177597 - 1177618 + G 83 -7.3 -4.6902 | gap 1, opp_overlap 1177596 1177597, overlap 1177602 CGAACTGGATCAAAT GGCGTTGGCA CCA TGCCA-TGCC TTTTTCCAGTTCTAC thyA 1177175 - 1177969 + | thymidylate synthase TERM 1153 1177979 - 1177997 + F 86 -8.8 -4.36485 | ATTTAATCTTCATAT CGGAGCTG TAA TGGCTCCG TTTTGCGTCTTTTAT TERM 1154 1178165 - 1178150 - f 74 -4.7 -4.82901 | GTCTTCCGATAAAAA TGCGA GTCGTA TCGCA GACCTCCCTGTATTT TERM 1155 1178347 - 1178335 - g 80 -4.9 -5.04601 | CTTAGAAAGCAAAAA GTTTT TAT AAAAC AAAGATCACTAATAA YpsIP31758_0985 1178269 - 1178838 + | hypothetical protein YpsIP31758_0986 1178829 - 1179437 + | hypothetical protein YpsIP31758_0987 1179434 - 1179904 + | hypothetical protein YpsIP31758_0988 1179892 - 1180302 + | prepilin peptidase dependent protein-like protein recC 1180437 - 1183808 + | exonuclease V subunit gamma TERM 1156 1184995 - 1185009 + G 83 -6.4 -4.88407 | TGGCACAACGTGATG TTGTCG TCG CGGCAA TTTTTGATTACATCA TERM 1157 1185073 - 1185055 - g 100 -6 -5.52986 | AGGGGATTAAAAAAA GCTATTTC GAT GAAATTGC ACATGTATTGAATCT TERM 1158 1186214 - 1186226 + G 74 -9.1 -3.61715 | AGAAATTGCTGGTAT GGCAC GTA GTGCC TTGTTAGGGCAGATC ptrA 1183890 - 1186778 + | protease III recB 1186775 - 1190437 + | exonuclease V subunit beta TERM 1159 1192293 - 1192309 + G 71 -6.5 -4.1552 | overlap 1192294 CGCCATTACCCGCGC CCGTCAG CAT CTGACGC TTTATTGCAGCGATG recD 1190434 - 1192407 + | exonuclease V subunit alpha TERM 1160 1192431 - 1192408 - T 75 -8.8 -3.66772 | opp_overlap 1192409, overlap 1192409 TTAAATCGCCAATAA TCTCAGGGCA TAAG CGCCCTGAGT TATCTGTTTCAAATA TERM 1161 1192409 - 1192430 + T 95 -11.6 -3.76634 | opp_overlap 1192408 1192409 TAAATCGCCAATAAT CTCAGGGC ATAAGC GCCCTGAG TTATCTGTTTCAAAT TERM 1162 1192430 - 1192409 - T 89 -12.3 -2.79581 | opp_overlap 1192409, overlap 1192408 TAAATCGCCAATAAT CTCAGGGCA TAAG CGCCCTGAG TTATCTGTTTCAAAT argA 1193887 - 1192562 - | N-acetylglutamate synthase YpsIP31758_0994 1194123 - 1195373 + | N-acetylmuramoyl-L-alanine amidase TERM 1163 1195572 - 1195559 - f 100 -8.1 -6.02919 | opp_overlap 1195559 CCAGAAACAAAAAAA CACCC GATA GGGTG TCTAATGATGATATC TERM 1164 1197405 - 1197382 - g 73 -8.8 -3.86897 | gap 1 TTCACTGCTTATAAA GGT-GGCACGC AGA GCGAGCCTACC AGTAATGATTCGTCA mltA 1196275 - 1197447 + | murein transglycosylase A TERM 1165 1197501 - 1197486 - f 86 -11.8 -3.14211 | opp_overlap 1197486 ATTTGTTTTGATTAA GCGGCC AGTT GGCCGC TTTTGCATGAGTACT TERM 1166 1197486 - 1197501 + F 100 -11.8 -4.20084 | opp_overlap 1197486 ATTTGTTTTGATTAA GCGGCC AGTT GGCCGC TTTTGCATGAGTACT TERM 1167 1198325 - 1198336 + G 72 -5.8 -4.31895 | GCAACGATGGTTACT GCCA CGTT TGGC TTTGTTGCTGTGTCT YpsIP31758_0996 1197590 - 1198417 + | thiF family protein YpsIP31758_0997 1198907 - 1198467 - | Fe-S metabolism associated protein csdA 1200248 - 1199043 - | cysteine sulfinate desulfinase TERM 1168 1200641 - 1200621 - H 100 -9.7 -6.00086 | ATAGGATAAAAAAAA GCACCGCCA AAA TAACGGTGC TGCATAAAATCACTA TERM 1169 1200712 - 1200694 - H 84 -3.8 -5.54192 | opp_overlap 1200697, overlap 1200695 1200697 AGGAAGTGAAAAAAA GCAGTAGC TTA GCTACTAT GTCTGGCATACCAGA TERM 1170 1200711 - 1200695 - H 72 -7.3 -3.90888 | opp_overlap 1200697, overlap 1200694 1200697 GGAAGTGAAAAAAAG CAGTAGC TTA GCTACTA TGTCTGGCATACCAG gcvA 1200946 - 1201863 + | DNA-binding transcriptional activator GcvA TERM 1171 1202057 - 1202069 + G 100 -9.1 -5.47431 | TAATGCTGATATTTT CCGCT CTG AGCGG TTTTTTCTATGTTGC TERM 1172 1202326 - 1202368 + G 72 -6.2 -4.46404 | opp_overlap 1202330 1202333, overlap 1202330 CTGAGACTGTGGATA TATATCACGCCAGTAGGCGG AGT CTGTTTTCTGGCGGGATGGA TTTTGATGTTGATTG YpsIP31758_1000 1202029 - 1202424 + | hypothetical protein YpsIP31758_1001 1202417 - 1203523 + | putative RNA 2'-O-ribose methyltransferase TERM 1173 1203569 - 1203554 - T 86 -11.8 -3.16154 | opp_overlap 1203550 1203549 TAACATCATATTTAA GGGGCC TGTT GGCCCC TGAGGTTATTGACAA TERM 1174 1203650 - 1203676 + T 72 -10.1 -2.88849 | gap 1, overlap 1203645 1203651 TCCATGTAGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1175 1203651 - 1203677 + T 84 -10.1 -3.82218 | gap 1, overlap 1203645 1203650 CCATGTAGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1176 1203736 - 1203759 + T 100 -14.6 -4.90455 | GGGTTTGTCAGCAGT CTGAGGGGCC TATT GGCCCCTTAG TTTTTATGCGTATAT xni 1204529 - 1203774 - | exonuclease IX TERM 1177 1204700 - 1204713 + r 75 -3.1 -5.1861 | ATTTAAATTTACTCT TGGCA GATT TGTCA TTTTTTGCTGCTCAA YpsIP31758_1003 1206153 - 1204789 - | putative decarboxylase TERM 1178 1205140 - 1205117 - G 75 -10.3 -3.42354 | opp_overlap 1205115 1205117 1205120 CAGTTGAAGCTATAA GCATCGCCG GTATTA CGGCGATAC TCTTTCACCAGTGGC TERM 1179 1205770 - 1205758 - G 83 -6.3 -4.90471 | ACGTAAAATAGAAAA GACTA GGT TAGTC AAATGACTGGAGCTC queF 1207151 - 1206306 - | 7-cyano-7-deazaguanine reductase YpsIP31758_1005 1207283 - 1207834 + | SecY interacting protein Syd TERM 1180 1208335 - 1208390 + F 100 -7.7 -6.32976 | opp_overlap 1208343 1208348 1208351, overlap 1208343 1208351 ATTTTAGCTGGATTG CTATAAAACGAATTGAGGGGTACTG GTAAAA CAGTACCCCTTTTTTTGTTTTTTTG TTTTTTTGTTTTTTT TERM 1181 1208343 - 1208382 + F 100 -7.9 -6.32976 | opp_overlap 1208343 1208348 1208351, overlap 1208335 1208351 TGGATTGCTATAAAA CGAATTGAGGGGTACTG GTAAAA CAGTACCCCTTTTTTTG TTTTTTTGTTTTTTT TERM 1182 1208351 - 1208374 + F 100 -12.5 -6.32976 | opp_overlap 1208348 1208343 1208351, overlap 1208343 1208335 TATAAAACGAATTGA GGGGTACTG GTAAAA CAGTACCCC TTTTTTTGTTTTTTT TERM 1183 1208374 - 1208351 - f 88 -12.5 -2.67189 | opp_overlap 1208351 1208343 1208335, overlap 1208348 1208343 TATAAAACGAATTGA GGGGTACTG GTAAAA CAGTACCCC TTTTTTTGTTTTTTT YpsIP31758_1006 1208542 - 1208874 + | hypothetical protein YpsIP31758_1007 1208874 - 1209647 + | tRNA pseudouridine synthase C YpsIP31758_1008 1209675 - 1210124 + | flavodoxin TERM 1184 1210145 - 1210180 + T 86 -12.1 -3.17194 | overlap 1210147 ATATCTTGATTTTAT TGCGTATTGTGGCAA GTTTCG TTGTCACAATACGTA TTCGGTTACCGAGGT TERM 1185 1210147 - 1210178 + T 93 -12.5 -3.14878 | overlap 1210145 ATCTTGATTTTATTG CGTATTGTGGCAA GTTTCG TTGTCACAATACG TATTCGGTTACCGAG YpsIP31758_1009 1210603 - 1210214 - | hypothetical protein TERM 1186 1210280 - 1210305 + g 79 -2.5 -5.46706 | ATTGGTGACAACACT TTCCAGGTGAC GTAG GTCATCCAGAA TTTTTCTTTTCAAAT TERM 1187 1210717 - 1210697 - R 100 -8.3 -5.53288 | opp_overlap 1210696 1210694 1210697 1210699 CGTAAGGCAAAAAAA TAGCGGG TGGTTAG CCCGCTA CTCTTAATCTTAGTC dapD 1211551 - 1210727 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase glnD 1214407 - 1211726 - | PII uridylyl-transferase TERM 1188 1212522 - 1212532 + g 71 -4.6 -4.65895 | CTATTTTGCATTCCG CGGC GTA GCTG TTTTTCGGTCGCAAA TERM 1189 1213345 - 1213363 + g 70 -2.3 -4.87291 | CCCGTAGTTGAAACT CTTCGTC AAGTG GACGCGG TTTTTCATTCGCATC TERM 1190 1214457 - 1214443 - R 100 -12.8 -5.26316 | opp_overlap 1214437 1214443 GCAGCCCATAAAAAA GCCGGC GGT GCCGGC TTGTCATTATTACTC TERM 1191 1214443 - 1214457 + r 100 -12.8 -3.6216 | opp_overlap 1214443, overlap 1214437 GCAGCCCATAAAAAA GCCGGC GGT GCCGGC TTGTCATTATTACTC map1 1215258 - 1214467 - | methionine aminopeptidase rpsB 1215693 - 1216418 + | 30S ribosomal protein S2 TERM 1192 1216411 - 1216399 - f 76 -7.7 -4.16842 | TTCAGGCGGAAGAAA GCTTC GTA GAAGC TGAATAATAAGTCCG TERM 1193 1216474 - 1216492 + F 100 -16 -3.74792 | AAATATGTTGGTTAG GGGGGCCT TAT AGGCCCCC TTTGCATATCTAATG tsf 1216546 - 1217403 + | elongation factor Ts TERM 1194 1217413 - 1217436 + F 100 -12.4 -4.68384 | opp_overlap 1217413 TCTTAATGCTCCAAA TGGGGCCGCC AATA GGCGGTTCCA TTTTATTCACTCGAT TERM 1195 1217436 - 1217413 - f 70 -8 -3.57561 | opp_overlap 1217413 TCTTAATGCTCCAAA TGGGGCCGCC AATA GGCGGTTCCA TTTTATTCACTCGAT TERM 1196 1217995 - 1218008 + G 75 -5.3 -4.72986 | TAGCTTGCTGCGTCA TAACC GTGT GGTTA TTTTTGCTGCGGGTA TERM 1197 1218296 - 1218278 - g 72 -5.8 -4.33153 | opp_overlap 1218280, overlap 1218280 TTCAACATGAATAAA CCCGGCGC TTT GCGTCGTG TGGTGATGGGTGAGA pyrH 1217612 - 1218337 + | uridylate kinase frr 1218473 - 1219030 + | ribosome recycling factor TERM 1198 1219045 - 1219074 + F 100 -11.5 -5.44721 | gap 1, opp_overlap 1219051, overlap 1219051 ATCTCTACTCGCATT GTATAAGCGTCGCC TTA GGCGGCGCTT-TGC TTTTTTTCCGGTCAT TERM 1199 1219051 - 1219069 + F 100 -13.8 -4.5187 | opp_overlap 1219051, overlap 1219045 ACTCGCATTGTATAA GCGTCGCC TTA GGCGGCGC TTTGCTTTTTTTCCG TERM 1200 1219069 - 1219051 - f 86 -11.6 -3.32963 | opp_overlap 1219051 1219045 ACTCGCATTGTATAA GCGTCGCC TTA GGCGGCGC TTTGCTTTTTTTCCG dxr 1219244 - 1220440 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1201 1220574 - 1220593 + F 100 -8.6 -5.63504 | gap 1, opp_overlap 1220574, overlap 1220562 GCTGTCACTCCAGAA GCCGTG-AC TTG GTACACGGC TTTTTTTGTGCACTT TERM 1202 1220906 - 1220918 + G 82 -5.5 -5.06414 | GACCAAGAAGTGACC GCTCT AAT GGAGC TTTTTGTTCGAGCAC uppS 1220663 - 1221421 + | undecaprenyl diphosphate synthase cdsA1 1221431 - 1222279 + | CDP-diglyceride synthase rseP 1222308 - 1223663 + | zinc metallopeptidase TERM 1203 1224710 - 1224700 - g 73 -5.4 -4.49311 | overlap 1224708 ATGATGACGATAAAA CAGT TAA ACTG CATATCAACGTGGAT YpsIP31758_1021 1223700 - 1226087 + | outer membrane protein assembly factor YaeT TERM 1204 1226624 - 1226606 - g 73 -4.6 -4.6759 | opp_overlap 1226601 1226606 AAGAGCGTAACAAAA TCCTGA GCCGTAT TCAGGA TGCTGTTAAATCTGT skp 1226245 - 1226742 + | periplasmic chaperone TERM 1205 1226795 - 1226827 + G 75 -11.4 -2.63823 | gap 1, overlap 1226792 1226791 1226825 AGTTGGATGCACAGG TGCACGGTGATGGCG ATCT TGTCATCACCG-GCA TCGCTTCTATGCATT lpxD 1226746 - 1227768 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 1206 1227891 - 1227903 + F 70 -2.7 -5.00616 | overlap 1227892 GTGCAGGCCGTGTTG TTGAT AGC ATCAG TTTTTTAGACAGGAA fabZ 1227926 - 1228456 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 1228460 - 1229248 + | UDP-N-acetylglucosamine acyltransferase lpxB 1229252 - 1230436 + | lipid-A-disaccharide synthase TERM 1207 1230608 - 1230580 - g 79 -2.3 -5.50499 | overlap 1230581 1230582 1230584 GCAGATTCAAAAAAA CTCAGCGAGAAGC GCC GCCTGTCACTGTA TGACGAAATCACTGA rnhB 1230433 - 1231029 + | ribonuclease HII TERM 1208 1232093 - 1232077 - g 75 -5.1 -4.82901 | overlap 1232078 TTTCTGGTAGAAAAA GCCAAAC AAG GTTTGGA AGAACGTTTGGAATT TERM 1209 1232540 - 1232553 + G 71 -6.7 -4.25056 | overlap 1232537 TCGGCCGTGTATTAG GCCAT CCCT ATGGC TTTGTTGATCGGATC TERM 1210 1233362 - 1233339 - g 82 -5.2 -5.07486 | opp_overlap 1233339, overlap 1233341 CATGGGTAAGAAAAA CCCTGCTGAG ATGG CTAAGCAGCG TTCTGTATTTGAAGA TERM 1211 1233820 - 1233810 - g 75 -5.4 -4.8048 | opp_overlap 1233810 TGTCGATACCAAAAA GCTT AAC AAGC GTATTTTAGAAAAAC dnaE 1231192 - 1234674 + | DNA polymerase III subunit alpha TERM 1212 1234770 - 1234742 - g 71 -6.8 -4.27584 | gap 1 AGCTGGAAGCGAAAA TTGACTCGCTGAC TGCA GTCAGCC-GTCAA GACGAAAAATTAGAT TERM 1213 1235457 - 1235434 - g 78 -11 -3.31792 | CCATTAGCCGCAGAA GCGATGGGCA TTAC TGCACATCGC CTAAAAGAACTGAAG accA 1234687 - 1235646 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 1214 1235669 - 1235691 + F 100 -5.5 -6.08563 | opp_overlap 1235668 1235663 1235669 GCCAACTGATAAAAG CCGGTGC GGAATTTAA GCGCCGG TTTTTTTTATCTATT YpsIP31758_1030 1235830 - 1236228 + | glyoxalase family protein TERM 1215 1237472 - 1237492 + G 76 -9 -3.84185 | GGTATTCCCCCATGG CAGCGGGA ACGTA TTCCGCTG TTATATTTCGGTGAA tilS 1236257 - 1237612 + | tRNA(Ile)-lysidine synthetase YpsIP31758_1032 1237868 - 1238185 + | cytochrome c family protein TERM 1216 1238435 - 1238400 - T 100 -17 -4.1043 | opp_overlap 1238407, overlap 1238407 TGTAAATAGGATAAA TGCAAAACGGGCCGCT CTTC AGCGACCCGTTTTTCA CAAGGAAGTGGAAAC TERM 1217 1238407 - 1238428 + T 100 -11.5 -4.56597 | opp_overlap 1238400 1238407 AGGATAAATGCAAAA CGGGCCGCT CTTC AGCGACCCG TTTTTCACAAGGAAG TERM 1218 1238428 - 1238407 - T 100 -13.7 -4.40173 | opp_overlap 1238407, overlap 1238400 AGGATAAATGCAAAA CGGGCCGCT CTTC AGCGACCCG TTTTTCACAAGGAAG YpsIP31758_1033 1238704 - 1238450 - | Rho-binding antiterminator YpsIP31758_1034 1238897 - 1238697 - | hypothetical protein TERM 1219 1238733 - 1238748 + g 78 -11.8 -3.08679 | opp_overlap 1238731 CACCAATAAGTTAGC GGCGGC ATAG GCCGCC TGTTCCCTAACGGAG TERM 1220 1239678 - 1239653 - g 74 -9.1 -3.6445 | overlap 1239654 1239656 AGAATAATCTGGAAA TTAGTTTTGCC GAAT GGCAAAACTAC GGGCAATAAGTGTGT TERM 1221 1239677 - 1239654 - g 81 -12.6 -2.77947 | overlap 1239653 1239656 GAATAATCTGGAAAT TAGTTTTGCC GAAT GGCAAAACTA CGGGCAATAAGTGTG TERM 1222 1239675 - 1239656 - g 74 -10.8 -2.92935 | overlap 1239654 1239653 ATAATCTGGAAATTA GTTTTGCC GAAT GGCAAAAC TACGGGCAATAAGTG YpsIP31758_1035 1239139 - 1239687 + | hypothetical protein YpsIP31758_1036 1239666 - 1240106 + | hypothetical protein cutF 1240191 - 1240874 + | lipoprotein involved with copper homeostasis and adhesion TERM 1223 1240932 - 1240897 - T 76 -7.7 -4.23999 | gap 2, opp_overlap 1240900 CCATAGCTAAAATAA GAAGCCGCACGGCAG TTCAAGTT CT-CCG-GCGGCTTC ATCAGTAAAATACCC proS 1242726 - 1241008 - | prolyl-tRNA synthetase TERM 1224 1241072 - 1241083 + g 85 -5.8 -5.09762 | ATCATTTGTTTCTCA CCGA CGCG TCGG TTTTTGTATTCCACT YpsIP31758_1039 1243537 - 1242830 - | hypothetical protein TERM 1225 1243461 - 1243481 + g 74 -3.9 -4.99645 | overlap 1243463 TCCTCAACCAAACCG GGTTGCCGT GGT ACCGCAAAC TTTTCTTTATACGGT YpsIP31758_1040 1243941 - 1243534 - | outer membrane lipoprotein TERM 1226 1244026 - 1244003 - R 100 -16.8 -3.97674 | opp_overlap 1244006, overlap 1244006 CTATTATTCAAATAA CAAGACGGGC TATA GCCCGTCTTG TCGATATATTCAATA TERM 1227 1244023 - 1244006 - R 100 -12.7 -4.10744 | opp_overlap 1244006, overlap 1244003 TTATTCAAATAACAA GACGGGC TATA GCCCGTC TTGTCGATATATTCA TERM 1228 1244006 - 1244023 + r 100 -12.7 -3.42583 | opp_overlap 1244006 1244003 TTATTCAAATAACAA GACGGGC TATA GCCCGTC TTGTCGATATATTCA metQ 1244874 - 1244059 - | DL-methionine transporter substrate-binding subunit metI 1245591 - 1244938 - | DL-methionine transporter permease subunit TERM 1229 1245173 - 1245184 + g 71 -4.4 -4.79223 | CCGGGCAGGGCTTCT GGTA ATAA TACC TTTTTGATGATCTGC metN 1246615 - 1245584 - | DL-methionine transporter ATP-binding subunit gmhB 1246802 - 1247368 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 1230 1249653 - 1249616 - f 78 -5.7 -4.7629 | opp_overlap 1249610 1249616 1249619, overlap 1249619 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 1231 1249650 - 1249619 - f 78 -7.4 -4.47888 | opp_overlap 1249616 1249610 1249619, overlap 1249616 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 1232 1251109 - 1251091 - f 82 -10.3 -3.57798 | overlap 1251104 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 1233 1251569 - 1251543 - f 70 -9.4 -2.75844 | opp_overlap 1251557 1251565, overlap 1251542 1251545 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 1234 1251616 - 1251605 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 1235 1252728 - 1252738 + F 74 -6.8 -4.27316 | opp_overlap 1252728 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 1236 1253183 - 1253163 - f 100 -14.1 -4.14739 | opp_overlap 1253163 CCACTTATTGCAAAA CCCTGAATC TTA GATTCAGGG TTTTTTGCATTTATA TERM 1237 1253163 - 1253183 + F 100 -14.1 -5.24449 | opp_overlap 1253163 CCACTTATTGCAAAA CCCTGAATC TTA GATTCAGGG TTTTTTGCATTTATA dkgB 1253586 - 1254389 + | 2,5-diketo-D-gluconate reductase B TERM 1238 1254414 - 1254432 + F 100 -9.6 -5.83211 | AAGACACTGGACGAG CCACCTTA CAT TGAGGTGG TTTTTTATTTTGGTG YpsIP31758_1049 1254424 - 1254888 + | hypothetical protein TERM 1239 1255528 - 1255544 + G 70 -2.2 -4.8622 | GCCAGCTATCAGGCC GCAGAT CAGGT ACCTGC TTTTTCATTGCCCCA TERM 1240 1255921 - 1255935 + G 75 -3.4 -5.13354 | overlap 1255923 CGCAGTCGTGCGTTC GGCCGG CCT CTGGAC TTTATTTTTTATCGC YpsIP31758_1050 1255249 - 1256031 + | hypothetical protein TERM 1241 1256037 - 1256052 + T 100 -9 -4.60889 | opp_overlap 1256037 CCAACCATAAAAAAA GCACCT CGAA AGGTGC TTTTTGACAGTGATT TERM 1242 1256052 - 1256037 - T 100 -9 -5.71983 | opp_overlap 1256037 CCAACCATAAAAAAA GCACCT CGAA AGGTGC TTTTTGACAGTGATT mltD 1257453 - 1256074 - | membrane-bound lytic murein transglycosylase D TERM 1243 1256703 - 1256735 + g 80 -7 -4.58395 | TTATACCGTACTTTT TGCTGTTCTTGAGT AAATC ACCCAAGGCCAGCA TTTTTGGAACATAAA YpsIP31758_1052 1258280 - 1257525 - | metallo-beta-lactamase family protein TERM 1244 1257996 - 1258031 + g 75 -3.2 -5.07107 | overlap 1257992 1257998 TTGTCCGGCAATGGT GAGGCTATCGCCAT CATTAACA ATGACGGTGGCCCC TTTTTTCGCAGTTTC TERM 1245 1258902 - 1258876 - g 73 -8.7 -3.9461 | overlap 1258877 GCCCTTCAATAAGAA CGGTGGGCACT TTATC AGTACCCACCT GCCTGCGTTGGGATG TERM 1246 1258901 - 1258877 - g 81 -12.2 -2.96444 | overlap 1258876 CCCTTCAATAAGAAC GGTGGGCACT TTATC AGTACCCACC TGCCTGCGTTGGGAT YpsIP31758_1053 1258325 - 1259044 + | putative methyltransferase rnhA 1259563 - 1259099 - | ribonuclease H TERM 1247 1259282 - 1259302 + g 73 -2.4 -5.11033 | overlap 1259283 1259284 GCGCACTGGCTTACG ATCGGCTG TTTTC CAGCCGCG TTTTTTCCAGTTATG dnaQ 1259633 - 1260397 + | DNA polymerase III subunit epsilon TERM 1248 1260597 - 1260623 + T 100 -15.3 -4.18303 | opp_overlap 1260597 CGCCAAAATTTAGAA GCCCTGAGTTA AGTAA TAACTCAGGGC TTTGTCGTTTCTGCT TERM 1249 1260623 - 1260597 - T 100 -15.3 -3.52113 | opp_overlap 1260597 CGCCAAAATTTAGAA GCCCTGAGTTA AGTAA TAACTCAGGGC TTTGTCGTTTCTGCT YpsIP31758_1056 1262127 - 1260643 - | cytosine/purines/uracil/thiamine/allantoin family permease YpsIP31758_1057 1262321 - 1262455 + | hypothetical protein YpsIP31758_1058 1262448 - 1263398 + | polysaccharide deacetylase family protein TERM 1250 1263428 - 1263409 - T 91 -7.2 -5.28176 | opp_overlap 1263411, overlap 1263422 GGTAGGGATAAAAAA CAGATACC CGAA AGTATCTG TATACCCGAAAGTAT proX 1264463 - 1263459 - | glycine betaine transporter periplasmic subunit TERM 1251 1263646 - 1263674 + g 80 -2.9 -5.4505 | overlap 1263648 ATGATAGAGAAAAGC TTGGCGGCGGCCG GAT TGGCTTCAGCCCA TTTTTTGTTCGCCAC proW 1265677 - 1264511 - | glycine betaine transporter membrane protein proV 1266869 - 1265670 - | glycine betaine/L-proline ABC transporter, ATP-binding protein TERM 1252 1267463 - 1267479 + r 80 -3.5 -5.37043 | GGCTAACTGCCTATT GGGGCTG AGT CTCCCCC TTTTTTATCTAGAAT YpsIP31758_1062 1268516 - 1267545 - | ribonucleotide-diphosphate reductase subunit beta YpsIP31758_1063 1270755 - 1268605 - | ribonucleotide-diphosphate reductase subunit alpha TERM 1253 1269316 - 1269303 - G 85 -5.9 -5.03314 | CTGAGCCGTAAAAAA GACGC TCCC GCGCC AGATAACCGTGCAGG nrdI 1271141 - 1270737 - | ribonucleotide reductase stimulatory protein nrdH 1271391 - 1271155 - | glutaredoxin-related protein NrdH TERM 1254 1272226 - 1272201 - g 90 -9 -4.63527 | gap 1, overlap 1272202 1272203 GCATCAGTTCAAAAA GC-GCCCGTGC AAAAA GCACAGGCAGC GAAAAAGCACCATAA YpsIP31758_1066 1271913 - 1272278 + | acid shock protein precursor TERM 1255 1272318 - 1272337 + F 100 -9.3 -5.63504 | opp_overlap 1272320 CAGGTTAATCCCAAT CACCCAC TTAATT GTGGGTG TTTTTTTATAAGCTT YpsIP31758_1067 1272757 - 1273092 + | hypothetical protein YpsIP31758_1068 1273639 - 1273190 - | hypothetical protein TERM 1256 1273507 - 1273525 + g 73 -2.4 -5.10933 | opp_overlap 1273507, overlap 1273508 CCATCTCTTGCAACA TCGATTCA ATA TAAATCGG TTTTATTTTCAGTAG YpsIP31758_1069 1274142 - 1273804 - | hypothetical protein YpsIP31758_1070 1274650 - 1274862 + | cold shock protein TERM 1257 1274908 - 1274925 + F 100 -9.1 -6.25741 | opp_overlap 1274907 1274908 AAATAGATTTAGAAG CCTCGTC TTTT GACGGGG TTTTTTTTATTATTT TERM 1258 1275268 - 1275288 + F 72 -6.1 -4.35644 | opp_overlap 1275260 1275268 1275272, overlap 1275265 1275269 TAATAATCAAGCCAA TCAATAGCC TGG GGCTTTTGG TTCTTTTCTACTACT TERM 1259 1275694 - 1275705 + G 79 -2.2 -5.36441 | CCTTGGTGGCAACTG CGTT ATTG AGCG TTTTTTCTGTCCCAG TERM 1260 1276722 - 1276709 - g 73 -2.3 -5.05601 | CATCAGAGAGAAAAA TGGCC TACC GGCTA AGATAACGCTTTGGT yntA 1275651 - 1277228 + | nickel ABC transporter, periplasmic nickel-binding protein yntB 1277228 - 1278196 + | nickel ABC transporter, permease protein yntC 1278193 - 1278999 + | nickel ABC transporter, permease protein yntD 1278999 - 1279805 + | nickel ABC transporter, ATP-binding protein yntE 1279798 - 1280463 + | nickel ABC transporter, ATP-binding protein YpsIP31758_1076 1281286 - 1281119 - | hypothetical protein ureA 1281662 - 1281964 + | urease subunit gamma ureB 1282017 - 1282451 + | urease subunit beta TERM 1261 1283155 - 1283167 + G 73 -10.5 -3.14211 | opp_overlap 1283153, overlap 1283163 GAAAGGTAATTCATA CGGGC GCG GCCCG TTGCTGGAACAGGCT ureC 1282541 - 1284259 + | urease subunit alpha ureE 1284555 - 1285250 + | urease accessory protein UreE ureF 1285272 - 1285958 + | urease accessory protein UreF ureG 1286084 - 1286746 + | urease accessory protein UreG TERM 1262 1287135 - 1287115 - g 72 -6.2 -4.431 | overlap 1287129 CAGTCAGCCACAAAA GTTCACAT GATGA ATGCGAAC TACGCCTCGCAGATC ureD 1286743 - 1287708 + | urease accessory protein UreD TERM 1263 1287791 - 1287772 - f 100 -13.6 -3.09327 | overlap 1287774 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GGAGGTTATTGACAA TERM 1264 1287789 - 1287774 - f 77 -10.4 -3.10522 | overlap 1287772 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGGAGGTTATTGAC TERM 1265 1287869 - 1287895 + F 73 -10.1 -2.914 | gap 1, opp_overlap 1287854, overlap 1287870 CCATCCCTGGGGGCT CGAGCCGCGCCA TCCG TGGCGCGGA-CG CTTTACTCTCCTGCC TERM 1266 1287870 - 1287896 + F 84 -10.1 -3.8647 | gap 1, overlap 1287869 CATCCCTGGGGGCTC GAG-CCGCGCCA TCCG TGGCGCGGACGC TTTACTCTCCTGCCT TERM 1267 1287958 - 1287979 + F 84 -10.1 -3.86346 | overlap 1287959 1287961 TTTGTCAGCAGTCTG AGAGGCTGG GTAC CCAGCCTCG TTTATCAGCCAGTGA TERM 1268 1287959 - 1287978 + F 100 -13.6 -2.91593 | overlap 1287958 1287961 TTGTCAGCAGTCTGA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 1269 1287961 - 1287976 + F 76 -10.4 -3.00946 | overlap 1287959 1287958 GTCAGCAGTCTGAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 1270 1288197 - 1288221 + G 71 -4.3 -4.72986 | opp_overlap 1288200 1288203 TCAGGTAATGTTTCA GAATAACCC ATTGACC GGGCTATTC TTTTTCATCGCAATA yut 1288087 - 1289079 + | urea transporter TERM 1271 1289187 - 1289155 - f 73 -10 -2.93853 | gap 1, overlap 1289152 ATAGACCTCAAATTA TTGGCGTTATCG-TG TTGT CAGCGATAACGCCAG GTCAGAACGGGTAGG TERM 1272 1290057 - 1290074 + G 71 -7 -3.99091 | opp_overlap 1290054 ATTACAATATCACTA TCACCG CCGCGT CGGTGA TTATTGCTTTCTTTA ureH 1289228 - 1290286 + | high-affinity nickel transport protein TERM 1273 1290407 - 1290366 - T 91 -10.3 -4.20918 | opp_overlap 1290370, overlap 1290368 1290370 GGGAAGGCTAACAAA TAGAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTTTT TTTACAGGTTACATA TERM 1274 1290405 - 1290368 - T 100 -12.9 -3.70139 | opp_overlap 1290370, overlap 1290366 1290370 GAAGGCTAACAAATA GAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTT TTTTTACAGGTTACA TERM 1275 1290370 - 1290403 + T 100 -15.5 -5.43866 | opp_overlap 1290370 1290368 1290366 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTACAGGTTA TERM 1276 1290403 - 1290370 - T 100 -15.5 -3.4214 | opp_overlap 1290370, overlap 1290368 1290366 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTACAGGTTA YpsIP31758_1086 1290780 - 1290451 - | acid-resistance protein kch 1291399 - 1292574 + | voltage-gated potassium channel TERM 1277 1292614 - 1292635 + T 100 -8 -5.93809 | opp_overlap 1292614 GTGTTTATATCAAAA CACCCTCG GTTAAG TGAGGGTG TTTTTTTTGTCACGA TERM 1278 1292635 - 1292614 - T 75 -7.3 -4.34402 | opp_overlap 1292614 GTGTTTATATCAAAA CACCCTC GGTTAAGT GAGGGTG TTTTTTTTGTCACGA YpsIP31758_1088 1293076 - 1292672 - | camphor resistance protein CrcB YpsIP31758_1089 1293454 - 1293092 - | CrcB-like protein TERM 1279 1293185 - 1293203 + g 74 -11 -2.92668 | overlap 1293180 TGCTCTGCCTCGGGC TGTGGCCA GTT TGGCCGCA TCTAATTGCATACTG YpsIP31758_1090 1293740 - 1293561 - | hypothetical protein chbB 1294513 - 1294830 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB chbC 1294841 - 1296202 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC chbA 1296369 - 1296716 + | N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA TERM 1280 1297081 - 1297111 + G 83 -6.8 -4.98061 | overlap 1297084 TGTCTCGGCCTATTG TGGCCTCTCAGGCG TAT CGCTTAAGAGGTGA TTTTCTTTCCTATAT TERM 1281 1297084 - 1297108 + G 78 -10.7 -3.34291 | overlap 1297081 CTCGGCCTATTGTGG CCTCTCAGGCG TAT CGCTTAAGAGG TGATTTTCTTTCCTA chbR 1296765 - 1297595 + | DNA-binding transcriptional regulator ChbR chbG 1297647 - 1298408 + | hypothetical protein YpsIP31758_1096 1298591 - 1298415 - | hypothetical protein TERM 1282 1298659 - 1298629 - R 100 -15.6 -2.85606 | opp_overlap 1298634, overlap 1298621 1298619 1298631 1298634 TCATAGAGCATCACA GATAATGCCCCC ATTTTTA GGGGGCATTATC CTACAAGAGGCGACT TERM 1283 1298657 - 1298631 - R 93 -12.4 -2.97456 | opp_overlap 1298634, overlap 1298621 1298619 1298629 1298634 ATAGAGCATCACAGA TAATGCCCCC ATTTTTA GGGGGCATTA TCCTACAAGAGGCGA TERM 1284 1298654 - 1298634 - R 80 -9.7 -3.62616 | opp_overlap 1298634, overlap 1298621 1298619 1298631 1298629 GAGCATCACAGATAA TGCCCCC ATTTTTA GGGGGCA TTATCCTACAAGAGG TERM 1285 1298634 - 1298654 + r 76 -9.7 -3.40403 | opp_overlap 1298621 1298619 1298634 1298631 1298629 GAGCATCACAGATAA TGCCCCC ATTTTTA GGGGGCA TTATCCTACAAGAGG YpsIP31758_1097 1299238 - 1299122 - | hypothetical protein TERM 1286 1299808 - 1299819 + G 73 -7.2 -4.27467 | opp_overlap 1299804 GCAGAACAGAGTAGG GCGG TTAA CCGC TTTATGTTGGTATTA seqA 1299568 - 1300095 + | replication initiation regulator SeqA pgm 1300168 - 1301811 + | phosphoglucomutase TERM 1287 1301866 - 1301889 + F 100 -11.8 -5.53079 | gap 1, opp_overlap 1301866 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT TERM 1288 1301889 - 1301866 - f 86 -11.8 -3.16564 | gap 1, opp_overlap 1301866 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT TERM 1289 1301977 - 1301993 + F 75 -3 -5.11836 | TATTGGATGCCAATT CCATAT TTAAT GTATGG TTTTATTTTGAATGT YpsIP31758_1100 1302185 - 1302427 + | hypothetical protein TERM 1290 1302490 - 1302473 - T 100 -11.3 -4.8622 | opp_overlap 1302466 1302476 TGGCGCAATTAAAAA TGACCGC TCAG GCGGTCA TCTAAGATTAATTTA YpsIP31758_1101 1302983 - 1302555 - | integral membrane protein kdpE 1303707 - 1303078 - | DNA-binding transcriptional activator KdpE TERM 1291 1304604 - 1304614 + r 82 -6.8 -4.77567 | overlap 1304601 CTTCGTTATTCTGTC TGCC GCG GGCA TTTTGTTATCAACCT kdpD 1307355 - 1304629 - | sensor protein KdpD TERM 1292 1304734 - 1304720 - G 75 -3.5 -5.08255 | opp_overlap 1304727, overlap 1304725 AGTGGCAAAACAAAA CGGAA GCTGG CTCCG CCCTCTTGACGCTTC TERM 1293 1305816 - 1305842 + g 75 -8 -4.15565 | opp_overlap 1305836 TTTCATACAGATGTC TGGCCCGTTGTT CCC GATAACGGGCAA TTTTAGCCTGATAGC TERM 1294 1306005 - 1305980 - G 79 -9.7 -3.81473 | overlap 1305993 AAAAACAGATCGAAA CTGGCGACATT AATC ACTGCCGCCAG CACTGAAGGCCAGCG kdpC 1307967 - 1307365 - | potassium-transporting ATPase subunit C TERM 1295 1307840 - 1307856 + gH 95 -12.3 -3.25942 | TTATCGCCCAGTCGC GCCAGTG AAC CACTGGC TTGCTGTGAAAACAT TERM 1296 1308045 - 1308072 + Gr 71 -9.8 -2.72855 | opp_overlap 1308045 1308044, overlap 1308047 1308070 TTTGTGTCTTAAAAC CGGCCACCGCAT CAGG GTGCGATGGCTG TGGTTAAACAGTTTA YpsIP31758_1105 1307966 - 1308079 + | hypothetical protein kdpB 1310245 - 1308179 - | potassium-transporting ATPase subunit B TERM 1297 1309214 - 1309231 + gTr 70 -7.7 -3.73647 | gap 1, opp_overlap 1309214 1309213 TGCCAGCGAGGAAAG CTGAGCGG CAT CCGC-CAG TTGTTGCTCGGTGAC TERM 1298 1309492 - 1309458 - GTR 88 -9.2 -4.40298 | opp_overlap 1309458, overlap 1309459 AGGCAAACCAATAAA GCGACTAGCACGGTGA TGG TCACCGGGCTACCGGC TTGGCTGGCCTCCAC TERM 1299 1309490 - 1309459 - GTR 77 -10.2 -3.23094 | gap 1, opp_overlap 1309458, overlap 1309458 GGCAAACCAATAAAG CGACTAGCACGGTGA TGG TCACCGGGCTA-CCG GCTTGGCTGGCCTCC YpsIP31758_1107 1310342 - 1310217 - | hypothetical protein kdpA 1312027 - 1310339 - | potassium-transporting ATPase subunit A TERM 1300 1310466 - 1310450 - G 73 -8 -4.03204 | overlap 1310442 1310453 CAGTAAACCGATAAA CAACGG CCCAC CCGTTG GCAGGGTGCCGTTAC TERM 1301 1311269 - 1311253 - G 70 -2.2 -4.92783 | AAGGGATCAGAAAAA TGGCCA GCATT TGGACA AAATTACTGAATGCA TERM 1302 1311969 - 1311953 - G 81 -7.9 -4.60924 | CAAACGTGCTAAAAA CCCACCC AAC GGACGGG ACAACACGAACAACA TERM 1303 1312296 - 1312316 + H 71 -6.9 -4.12225 | opp_overlap 1312295 1312298 TTGGTTTGTGAAACT TACTTTCAC CGG GTGAATGTA TTTGGTTTGCTAATT TERM 1304 1312684 - 1312670 - g 73 -3.5 -4.84359 | GTATCTGGATAAAAA CCAGT GATAA ACCGG TTTGGCTGACCCAAT YpsIP31758_1109 1312522 - 1312728 + | hypothetical protein TERM 1305 1312780 - 1312804 + F 100 -12.1 -5.16237 | TACAAAAAATAGCTG GCCCGTGAGTA TCA TGCCCACGGGC TTTTTTAATGCGCTT YpsIP31758_1110 1312812 - 1312928 + | hypothetical protein YpsIP31758_1111 1313079 - 1313585 + | hypothetical protein TERM 1306 1314302 - 1314334 + G 74 -4 -4.91109 | opp_overlap 1314311, overlap 1314303 1314311 CCAGTTATTTCCTGC AGGGGAAGACGCTG CCTTA CAGCGTTTACGCCG TTTTTGTCGTGAACA phrB 1313691 - 1315154 + | deoxyribodipyrimidine photolyase cpdP 1315145 - 1316182 + | 3',5'-cyclic-nucleotide phosphodiesterase YpsIP31758_1114 1316322 - 1317068 + | putative hydrolase-oxidase TERM 1307 1317090 - 1317110 + F 100 -13.3 -2.9518 | overlap 1317106 GGATAGGGCTATTTT CGCCGATGT TTA GCATCGGCG TGTCTCCGTCTTACA YpsIP31758_1115 1317688 - 1318344 + | hypothetical protein YpsIP31758_1116 1318338 - 1319288 + | biotin-dependent carboxylase domain-containing protein YpsIP31758_1117 1319285 - 1320022 + | hypothetical protein TERM 1308 1320699 - 1320725 + G 73 -7.3 -4.15841 | gap 1, overlap 1320702 CGGAACCATTGCATA TCGCGCTGTGGG GGAT CCCA-ACCGCGA TTTGTGCTTTCCTGA YpsIP31758_1118 1320107 - 1320838 + | hypothetical protein YpsIP31758_1119 1320835 - 1321854 + | hypothetical protein pcp 1321864 - 1322511 + | pyrrolidone-carboxylate peptidase ung 1323288 - 1322602 - | uracil-DNA glycosylase TERM 1309 1323527 - 1323514 - H 73 -3.9 -5.0133 | overlap 1323518 GATGTGGTGAAAAAA TTGAT TTGA ATCAA AGAATGGTAGGGACT grcA 1323641 - 1324024 + | autonomous glycyl radical cofactor GrcA TERM 1310 1324073 - 1324088 + F 100 -10.4 -5.1675 | opp_overlap 1324071 AATCATAAAGTGATA GGGGAC TTCG GTCCCC TTTTTTCATGCCTGA YpsIP31758_1123 1324203 - 1325165 + | lipase family protein YpsIP31758_1124 1325131 - 1325262 + | hypothetical protein YpsIP31758_1125 1325249 - 1325905 + | ankyrin repeat-containing protein TERM 1311 1326015 - 1325998 - T 74 -4.8 -4.78237 | opp_overlap 1325993, overlap 1325993 1325985 TATCTGACAACAAAA CCGCTA TGTGAG CAGCGG CTTTGTTGTCGTGCA srmB 1327361 - 1326036 - | ATP-dependent RNA helicase SrmB TERM 1312 1327127 - 1327142 + g 78 -5.4 -5.00616 | gap 1 GCGTCAGGATCAGGA TCCGCGG TGG CC-CGGA TTTTTTGCGGGGGAA YpsIP31758_1127 1327613 - 1328359 + | methyltransferase family protein TERM 1313 1328434 - 1328411 - T 83 -8.9 -4.08958 | gap 1, opp_overlap 1328410 AGCGTGAAATAAGAA TC-GGGCGTC GTAGA GACGCCCTGA GGTTATTGACAAAGT TERM 1314 1328509 - 1328535 + T 72 -10.1 -2.88849 | gap 1, overlap 1328504 1328510 ACATCTATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1315 1328510 - 1328536 + T 84 -10.1 -3.82218 | gap 1, overlap 1328504 1328509 CATCTATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1316 1328596 - 1328620 + T 79 -11.4 -2.56539 | overlap 1328595 1328593 GGTTTGTCAGCAGTC TGCGGGCGTC GTAGA GACGCCCTCA ATCTTATGGATTCAG nadB 1330243 - 1328642 - | L-aspartate oxidase TERM 1317 1328803 - 1328769 - G 74 -10.8 -2.79183 | opp_overlap 1328759 1328757 GCGACTTGTACCAGA TTCCGTAACTCCAGCA GGT TATTGGAGATACGGAA ATTGGCATAATATTC TERM 1318 1328859 - 1328869 + g 74 -6.8 -4.46212 | overlap 1328850 ATGCGCCGTAGAGCC CGCT CTA AGCG TTTTGTGGTACGGAC TERM 1319 1330117 - 1330107 - G 70 -2.4 -4.91109 | overlap 1330109 CCCTGAGCATAAAAA GTGG CTC CCTC ATTAAGAGGCCCTTT rpoE 1330467 - 1331042 + | RNA polymerase sigma factor RpoE rseA 1331068 - 1331724 + | anti-RNA polymerase sigma factor SigE TERM 1320 1331813 - 1331780 - g 91 -13.3 -3.59979 | gap 1, opp_overlap 1331782 CCTGTTCATGGCAAA CATTGCT-TCGGCGGA ATC TACGCCGATAGCAATG TTGCAGGAAATGGGC TERM 1321 1331782 - 1331811 + G 72 -10.1 -3.02144 | gap 1, opp_overlap 1331780 TGTTCATGGCAAACA TTGCT-TCGGCGGA ATC TACGCCGATAGCAA TGTTGCAGGAAATGG rseB 1331724 - 1332680 + | periplasmic negative regulator of sigmaE TERM 1322 1333056 - 1333046 - g 71 -6.8 -4.26076 | TTACTGGCACGAAAA CTGG CAA CCAG AATTGAGGGGCTCAG rseC 1332677 - 1333132 + | SoxR reducing system protein RseC YpsIP31758_1133 1334007 - 1333153 - | hypothetical protein TERM 1323 1334027 - 1334047 + H 75 -8.3 -3.80733 | CTCTCCTCGTTACCG CCAAGAGAA TAT TTCACTTGG TTATTATAAAATCAC TERM 1324 1334511 - 1334498 - H 73 -3.9 -5.01497 | ACGACTAGAGAAAAA TTCAT ATAA ATGAA GCACATAAGAAACTT lepA 1334507 - 1336306 + | GTP-binding protein LepA lepB 1336316 - 1337314 + | lsignal peptidase I rnc 1337666 - 1338346 + | ribonuclease III era 1338343 - 1339254 + | GTP-binding protein Era TERM 1325 1339418 - 1339405 - g 75 -8.1 -4.27316 | opp_overlap 1339405 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT TERM 1326 1339405 - 1339418 + G 73 -8.1 -4.12599 | opp_overlap 1339405 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT recO 1339264 - 1339989 + | DNA repair protein RecO pdxJ 1340148 - 1340879 + | pyridoxal phosphate biosynthetic protein PdxJ acpS 1340879 - 1341259 + | 4'-phosphopantetheinyl transferase TERM 1327 1341288 - 1341312 + T 75 -5.8 -4.68593 | gap 1, opp_overlap 1341288 TAGCCGAAAATTTAA GGGATGGGTAT GGAA ATGC-CATCCC TTTTTGCATACTGGG YpsIP31758_1141 1341625 - 1341365 - | iron-sulfur cluster-binding protein YpsIP31758_1142 1342626 - 1341787 - | putative DNA-binding transcriptional regulator TERM 1328 1342303 - 1342316 + g 71 -4.5 -4.5442 | overlap 1342304 AATGTCTAGGGTTGC TCGCA GTGC TGCGG TTTTCTCGTTCAGCA YpsIP31758_1143 1342834 - 1343721 + | N-acetylmuramic acid-6-phosphate etherase YpsIP31758_1144 1343996 - 1344643 + | hypothetical protein TERM 1329 1345147 - 1345135 - g 73 -4.7 -4.72386 | CAAATGATGTAAAAA CCGGC GCC GCGGG GTCGCTGGTAGATAT tadA 1344714 - 1345316 + | tRNA-specific adenosine deaminase TERM 1330 1345332 - 1345362 + T 79 -11 -3.18912 | overlap 1345333 CGGCGGCCAGGTGAT GCGCCGCCCAGCAT GTT ATGACGGGCGGCGG TTGGTGACTAAATCA TERM 1331 1345333 - 1345361 + T 100 -14.5 -2.51133 | overlap 1345332 GGCGGCCAGGTGATG CGCCGCCCAGCAT GTT ATGACGGGCGGCG GTTGGTGACTAAATC YpsIP31758_1146 1346903 - 1345443 - | putative transglycosylase TERM 1332 1345507 - 1345523 + g 100 -6.5 -5.69068 | overlap 1345495 AGCTCCGCCTCAATG GCGGC ATGTTGA GCCGC TTTTTTCTCTTTTTC TERM 1333 1348508 - 1348497 - g 75 -5.8 -4.60487 | overlap 1348505 GATCATGTGCAAAAA GGTG AAAT CACC GTGGGGGCCAAATTG TERM 1334 1349205 - 1349164 - g 74 -2.9 -5.0538 | gap 1, opp_overlap 1349190 CGGTAGCGGAAAAAA CCTTCCTGATCACCAT-CGG CGA CCGCACGGTAACCGGTATGG TCACCCGTGATCAGA TERM 1335 1350166 - 1350153 - g 70 -8.1 -3.95073 | opp_overlap 1350153 1350152, overlap 1350157 GTGTACAGCGAGAAA CGCAG CACT CTGCG CTTGTGGTGGGCAGA purL 1347219 - 1351109 + | phosphoribosylformylglycinamidine synthase TERM 1336 1351148 - 1351120 - T 76 -10.4 -2.90751 | opp_overlap 1351121, overlap 1351119 1351123 GTTAATAAGTTAAAG TGAGAAGGGTAT TGAAG ATACCCTTCTCT TTATCAATTTATACC TERM 1337 1351121 - 1351147 + T 100 -14.6 -4.04319 | opp_overlap 1351120 1351119 1351123 TTAATAAGTTAAAGT GAGAAGGGTATT GAA GATACCCTTCTC TTTATCAATTTATAC TERM 1338 1351145 - 1351123 - T 76 -10.7 -2.69186 | opp_overlap 1351121, overlap 1351120 1351119 AATAAGTTAAAGTGA GAAGGGTAT TGAAG ATACCCTTC TCTTTATCAATTTAT TERM 1339 1351259 - 1351287 + T 70 -2.6 -5.06411 | gap 1, overlap 1351265 TCCCTTGTTGCTTTT CTGTA-ACTCAAA TTAT TTTGGGTATATAG TTTATTTTATTTTAT YpsIP31758_1148 1351928 - 1351554 - | hypothetical protein TERM 1340 1351968 - 1351982 + r 73 -8.6 -3.68222 | ATAACCGTTGTCATC CAAGTC ACT GACTTG TTGTTGACCTTAAAA YpsIP31758_1149 1352811 - 1352251 - | hypothetical protein TERM 1341 1353679 - 1353712 + H 80 -9.8 -3.617 | gap 2, opp_overlap 1353676, overlap 1353679 1353674 1353685 GGCATCCACATATTC TTG--CAACGGGGCAA TTTA TTGCCCCGTTGATCAA TGTTTAGTTGTCTAT TERM 1342 1353685 - 1353704 + H 100 -13.6 -3.23638 | opp_overlap 1353676, overlap 1353679 1353679 1353674 CACATATTCTTGCAA CGGGGCAA TTTA TTGCCCCG TTGATCAATGTTTAG TERM 1343 1353888 - 1353867 - H 100 -8.1 -5.77853 | gap 1, opp_overlap 1353867 AACCTTTAAAAAAAA GCACTTTGCT CGC AGCAA-GTGC TTTTTTTGTTATTTC TERM 1344 1353867 - 1353888 + H 100 -8.1 -6.01369 | gap 1, opp_overlap 1353867 AACCTTTAAAAAAAA GCACTTTGCT CGC AGCAA-GTGC TTTTTTTGTTATTTC TERM 1345 1354830 - 1354802 - g 70 -2.4 -4.90266 | gap 2, overlap 1354804 CCCATGAATTAAAAA CGCCCCT-CGC-CA GTA TGCGTGAAGGGACG GAGCTCTTGGCCGAT YpsIP31758_1150 1354006 - 1355442 + | putative sensor-like histidine kinase YfhK TERM 1346 1355532 - 1355548 + GF 89 -7.3 -5.00884 | CGTGAAACAGACCGG TCTCTCT GGC AGAGGGA TTTTTTGGGGAGCGT YpsIP31758_1151 1355446 - 1356498 + | hypothetical protein TERM 1347 1357445 - 1357456 + GF 73 -7.2 -4.19371 | CGGGAGTCGGCTAAG CGGC ATAA GCCG TTTGTTCGCAGTTTC YpsIP31758_1152 1356461 - 1357798 + | sigma-54 dependent DNA-binding response regulator YpsIP31758_1153 1357818 - 1357961 + | hypothetical protein YpsIP31758_1154 1357958 - 1359580 + | NAD synthetase glnB 1359595 - 1359933 + | nitrogen regulatory protein P-II 1 TERM 1348 1359972 - 1359997 + T 87 -6.2 -5.13473 | gap 1, opp_overlap 1359972 GCTGAATAACAAAAG CCCGT-TCGTT GCCAA AACGATGCGGG TTTTTTACATATAAT YpsIP31758_1156 1361029 - 1360130 - | hypothetical protein TERM 1349 1361456 - 1361429 - R 80 -9.9 -3.695 | overlap 1361430 TTGAAATAGCCGAAA TGCTGATCAGG TACCTT CCTGATCAGCG GCATTAAGTGCGTAG TERM 1350 1361455 - 1361430 - R 93 -13.4 -2.81218 | overlap 1361429 TGAAATAGCCGAAAT GCTGATCAGG TACCTT CCTGATCAGC GGCATTAAGTGCGTA hmp 1362683 - 1361493 - | nitric oxide dioxygenase TERM 1351 1361948 - 1361932 - G 70 -2.1 -4.89966 | opp_overlap 1361939, overlap 1361933 ACATCCAAAAAGAAA TCGCCAC GGG GTGGTGC GATGCGCACGATATC glyA 1363224 - 1364477 + | serine hydroxymethyltransferase TERM 1352 1364491 - 1364512 + F 95 -11.5 -3.86202 | AAGGCGGCTGTCACC GTCCTGGCC TCCT GGCCGGGGC TTTGATCTCATCGGG YpsIP31758_1159 1364590 - 1364811 + | hypothetical protein ail 1364929 - 1365468 + | attachment invasion locus protein TERM 1353 1365505 - 1365489 - f 72 -6.5 -4.3534 | opp_overlap 1365490, overlap 1365490 TCCTAACCATGAAAA CCCACCA TAA TGGTGGT TTCAGATTGCTGACA TERM 1354 1365490 - 1365504 + F 80 -10 -3.67976 | opp_overlap 1365490 1365489 CCTAACCATGAAAAC CCACCA TAA TGGTGG TTTCAGATTGCTGAC TERM 1355 1365504 - 1365490 - f 74 -10 -3.20722 | opp_overlap 1365490, overlap 1365489 CCTAACCATGAAAAC CCACCA TAA TGGTGG TTTCAGATTGCTGAC YpsIP31758_1162 1365838 - 1366995 + | putative 3-phenylpropionic acid transporter csiE 1368353 - 1366992 - | stationary phase inducible protein CsiE TERM 1356 1367081 - 1367054 - G 83 -12.8 -3.03781 | opp_overlap 1367055, overlap 1367049 TTAACGGAAATGATA TCTGAATCAGCG GCGG CGCTGATTCAGT TGATTGCAAAACATA TERM 1357 1367055 - 1367080 + g 100 -16.3 -3.33815 | opp_overlap 1367054 1367049 TAACGGAAATGATAT CTGAATCAGCG GCGG CGCTGATTCAG TTGATTGCAAAACAT TERM 1358 1368777 - 1368791 + G 73 -10 -3.36073 | overlap 1368776 GAAGTGATGGCTAAT GTGCTG GGG CAGCAC TATTTCACCGATATA YpsIP31758_1163 1368495 - 1369169 + | hypothetical protein YpsIP31758_1164 1369160 - 1370182 + | Ni2+-Co2+ transporter (NiCoT) family protein TERM 1359 1370250 - 1370227 - T 100 -8.9 -5.7946 | gap 1, opp_overlap 1370227 TTCCCAATAAAAAAA GCCAGTC-GG CTAAC CCTGACTGGC TTTTTATCTGAAACG TERM 1360 1370227 - 1370250 + T 100 -10.3 -4.96848 | opp_overlap 1370227 TTCCCAATAAAAAAA GCCAGTCGG CTAACC CTGACTGGC TTTTTATCTGAAACG suhB 1371084 - 1370281 - | inositol monophosphatase TERM 1361 1371319 - 1371282 - g 83 -9.5 -4.29738 | gap 1, opp_overlap 1371286 1371288 1371317 CCAGAGCCATGAAAA CAATGGGATTAACCAA TCTATAT TTGGTTAATCC-ATTG GTAAAACCAGATTCT YpsIP31758_1166 1371203 - 1371976 + | RNA methyltransferase TERM 1362 1372300 - 1372287 - g 71 -3.8 -4.66163 | ACGCCTACGTAAAAA TGGC TTAGTC GCCA GCGTACGCGGCCCAG iscR 1372132 - 1372626 + | DNA-binding transcriptional regulator IscR iscS 1372680 - 1373909 + | cysteine desulfurase IscS iscU 1373940 - 1374326 + | scaffold protein iscA 1374596 - 1374919 + | iron-sulfur cluster assembly protein hscB 1375032 - 1375556 + | co-chaperone HscB TERM 1363 1377562 - 1377583 + G 91 -13.7 -3.61398 | opp_overlap 1377559 TGAGCAAGAAAGTGC CGCGATCGC CCAA GCGGTCGCG TTATTACAGCAGCAG TERM 1364 1377671 - 1377702 + G 100 -15.2 -3.56568 | overlap 1377698 ACGCAAGATTTTGCC GCACGCCGGATGGA CGCT TCCATTCGCCGTGC TTTAGCAGGTCATTC hscA 1375799 - 1377733 + | chaperone protein HscA fdx 1377736 - 1378071 + | ferredoxin, 2Fe-2S type, ISC system YpsIP31758_1174 1378101 - 1378301 + | hypothetical protein TERM 1365 1378312 - 1378327 + F 100 -8.2 -5.49234 | AGTGAATACTGACTG GGTCGC GCAA GCGGCC TTTTTTATTGCGTAT TERM 1366 1379349 - 1379328 - g 71 -6.5 -4.25104 | opp_overlap 1379318 TGCCTCCGAGCAAAA TGCGCCGTT GATT ATCGACGCA GCCACCTTAACCGGC pepB 1378441 - 1379739 + | aminopeptidase B TERM 1367 1379789 - 1379759 - f 71 -8.9 -3.28368 | opp_overlap 1379754 1379765, overlap 1379750 1379765 ATTGAATTGAGAAGA CTCAAAGGGGCGC ATTTG GCGTCCCTTCGTG CATCTTCTCGACGTT TERM 1368 1379783 - 1379765 - f 70 -7.3 -3.79071 | opp_overlap 1379765 1379754, overlap 1379759 TTGAGAAGACTCAAA GGGGCGC ATTTG GCGTCCC TTCGTGCATCTTCTC TERM 1369 1379765 - 1379783 + F 72 -9.5 -3.22894 | opp_overlap 1379759 1379765, overlap 1379754 TTGAGAAGACTCAAA GGGGCGC ATTTG GCGTCCC TTCGTGCATCTTCTC TERM 1370 1380055 - 1380077 + G 71 -8.5 -3.7398 | gap 1, overlap 1380054 GATGGCGAAATGAGT TTCACCACCG CTAA CGG-GGTGAA TATTTTGCATTGGGA TERM 1371 1380343 - 1380321 - g 93 -13.4 -3.61715 | GATGCTGTTGAAGAA CGGCGGGTTG GTG CAACCCGCTG AAATGGTGGTAGATA sseB 1379818 - 1380735 + | enhanced serine sensitivity protein SseB TERM 1372 1380773 - 1380754 - T 79 -10.7 -3.11281 | opp_overlap 1380750, overlap 1380752 1380750 GTATCTAAAAGGATA GGGAGCC AATAGA GGCTCCC AGACTGTTGACAACC TERM 1373 1380860 - 1380834 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1380843, overlap 1380835 1380850 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1374 1380861 - 1380835 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1380843, overlap 1380834 1380850 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1375 1380939 - 1380958 + T 81 -10.7 -3.32997 | TTGTCAATAACCTCA GGGAGCC AATAGA GGCTCCC TTCCATTTCTGCCAC YpsIP31758_1177 1384358 - 1381005 - | putative autotransporter protein TERM 1376 1383408 - 1383420 + g 77 -4.1 -5.04249 | TTGTAGGCTGTTGGT TAGCG CAA TGCTA TTTATTTTTTGGCCA TERM 1377 1384504 - 1384518 + r 84 -2.9 -5.68023 | AGATTGATATTAATT TCAAT AAAAA ATTGA TTTTTTTCATTGTGA YpsIP31758_1178 1384619 - 1384482 - | hypothetical protein TERM 1378 1384826 - 1384801 - g 100 -11.1 -4.7078 | opp_overlap 1384801 1384813 1384814 TTAATCAGGTAAAAA GCAGGGAGCCA ATTG CAGCCCCCTGC GGTTTTTATCAGTCA TERM 1379 1384813 - 1384828 + G 73 -3.2 -4.88067 | opp_overlap 1384801, overlap 1384801 1384814 AAAGCAGGGAGCCAA TTGCAG CCCC CTGCGG TTTTTATCAGTCAAT YpsIP31758_1180 1384779 - 1384919 + | hypothetical protein YpsIP31758_1179 1389541 - 1384916 - | putative autotransporter protein TERM 1380 1390751 - 1390741 - g 75 -3.2 -5.12068 | TATATTCAATAAAAA TCCC TCC AGGA ATGCAAACTACAGTC TERM 1381 1392082 - 1392094 + G 74 -6.3 -4.37092 | GTTATGAACTGGCAC TGGTA GAT TACCA TTTTATCGAGACGGT YpsIP31758_1181 1390257 - 1392677 + | hypothetical protein ndk 1393004 - 1393432 + | nucleoside diphosphate kinase TERM 1382 1393598 - 1393559 - f 74 -9.2 -3.36518 | opp_overlap 1393559 1393564, overlap 1393560 TTAAAATTTGTACAA TGCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTTCTA TTATTTATACATTCT TERM 1383 1393559 - 1393598 + F 100 -13.6 -4.11906 | opp_overlap 1393559 1393560, overlap 1393564 TTAAAATTTGTACAA TGCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTTCTA TTATTTATACATTCT TERM 1384 1393596 - 1393560 - f 80 -11.6 -2.61429 | gap 1, opp_overlap 1393559 1393564, overlap 1393559 TAAAATTTGTACAAT GCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTT-C TATTATTTATACATT TERM 1385 1393564 - 1393593 + F 100 -20.1 -3.93744 | opp_overlap 1393560 1393559, overlap 1393559 ATTTGTACAATGCCA CGCCCCAGTAGAG ACAG CTCTGCTGGGGCG TTCTATTATTTATAC YpsIP31758_1183 1393694 - 1394890 + | hypothetical protein pilF 1395044 - 1395793 + | type IV pilus biogenesis/stability protein PilW YpsIP31758_1185 1395783 - 1396874 + | hypothetical protein TERM 1386 1397101 - 1397090 - g 72 -5.8 -4.44797 | opp_overlap 1397098, overlap 1397035 TGACCAATACCAAAA CCAC GGAT GTGG ATGCTACTGTTGCCC TERM 1387 1398062 - 1398046 - g 74 -9.5 -3.55203 | AAAATTCGTGCCAAA GCATCAA TTC TTGATGC GAATAACCGGATTGT ispG 1396978 - 1398105 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase hisS 1398314 - 1399588 + | histidyl-tRNA synthetase YpsIP31758_1188 1399602 - 1400237 + | hypothetical protein TERM 1388 1401194 - 1401213 + G 71 -6.4 -4.21974 | overlap 1401195 TCTGATGGCGGCGTA ACGCTTTG GAGT CAAAGCGA TTTATTGCATCGTAA TERM 1389 1401195 - 1401212 + G 70 -9.9 -3.12702 | overlap 1401194 CTGATGGCGGCGTAA CGCTTTG GAGT CAAAGCG ATTTATTGCATCGTA YpsIP31758_1189 1400249 - 1401430 + | outer membrane protein assembly complex subunit YfgL TERM 1390 1401475 - 1401497 + F 100 -13.4 -4.27117 | opp_overlap 1401475, overlap 1401492 CCAGTACCTCAAAAA CGGCTCCTGG GAC TCAGGGGCCG TTTGTATTCTAAAAA TERM 1391 1401497 - 1401475 - f 100 -10.5 -4.63527 | opp_overlap 1401475 1401492 CCAGTACCTCAAAAA CGGCTCCTG GGACT CAGGGGCCG TTTGTATTCTAAAAA YpsIP31758_1190 1401578 - 1403065 + | GTP-binding protein EngA TERM 1392 1403184 - 1403210 + F 86 -10.1 -3.9749 | gap 1, overlap 1403183 CTTCCTTGGGAGCTT GAG-CCGCGCCA TCTC TGGCGCGGACAC TTTACTCTTCTGCCT TERM 1393 1403261 - 1403272 + F 85 -2.2 -5.77988 | CGTCATCGGGGTTTG TCAG TAGC CTGG TTTTTTTCTCTATAT YpsIP31758_1191 1403434 - 1404390 + | auxin efflux carrier family protein YpsIP31758_1192 1404439 - 1404663 + | hypothetical protein xseA 1406126 - 1404750 - | exodeoxyribonuclease VII large subunit TERM 1394 1406835 - 1406819 - g 70 -2.2 -5.00616 | overlap 1406821 TTGTGCTGCAAAAAA TGCACG AAAAA CGTGTA GAAAAAGTGTTGGTC guaB 1406296 - 1407759 + | inositol-5-monophosphate dehydrogenase TERM 1395 1407772 - 1407802 + TF 100 -9.9 -5.79595 | opp_overlap 1407772 1407775 1407776 TAACAATTAGTTAAA TAATCATCTGGTG CTGGC CATCAGATGGTTA TTTTTTATTTTAAAA YpsIP31758_1195 1407956 - 1407831 - | hypothetical protein guaA 1407939 - 1409516 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1396 1409583 - 1409564 - g 83 -6.4 -4.93696 | opp_overlap 1409564 TGGAAATAGCAAAAA CCGCCT TGAATATT AGGCGG TTTGAGGTTATTGAC YpsIP31758_1197 1409548 - 1409700 + | hypothetical protein TERM 1397 1409713 - 1409744 + T 70 -8 -3.61715 | opp_overlap 1409701, overlap 1409714 TGACTTTGCCAGCAG TCTGAACCGCCTTA AATA TTAGGCGGTTGAGG TTATTGACAACGCTA TERM 1398 1409714 - 1409743 + T 70 -9.3 -2.76815 | opp_overlap 1409701, overlap 1409713 GACTTTGCCAGCAGT CTGAACCGCCTTA AATA TTAGGCGGTTGAG GTTATTGACAACGCT TERM 1399 1409874 - 1409893 + T 100 -7.8 -6.23317 | opp_overlap 1409874 GCCAGCAGTCTGAAA CCGCCTTA AATA TTAGGCGG TTTTTTTGTTTTTAT TERM 1400 1409893 - 1409874 - T 70 -7.8 -3.58343 | opp_overlap 1409874 GCCAGCAGTCTGAAA CCGCCTTA AATA TTAGGCGG TTTTTTTGTTTTTAT YpsIP31758_1198 1410434 - 1409955 - | hypothetical protein YpsIP31758_1199 1410856 - 1410458 - | hypothetical protein YpsIP31758_1200 1412645 - 1411764 - | hypothetical protein YpsIP31758_1201 1413210 - 1412743 - | putative entero membrane protein YpsIP31758_1202 1414048 - 1413200 - | hypothetical protein TERM 1401 1414580 - 1414598 + H 75 -8.9 -3.57561 | ACCTGCCGTTCTCTT TTCAGCC ACTGC GGCTGAA TTTACGCCATTAGCC TERM 1402 1414787 - 1414777 - g 74 -6.8 -4.36914 | GCTGGTGGCACAAAA CACC CGT GGTG TGCAGTCGGTTTATC thiD 1414643 - 1415443 + | phosphomethylpyrimidine kinase YpsIP31758_1204 1416391 - 1415471 - | hypothetical protein TERM 1403 1416179 - 1416190 + g 83 -7.2 -4.74518 | opp_overlap 1416169 AATGACAAAACCGTT CGCG GTAC CGCG TTTGTTTTGATAATT YpsIP31758_1205 1416761 - 1416576 - | hypothetical protein YpsIP31758_1206 1416622 - 1417131 + | hypothetical protein TERM 1404 1417141 - 1417164 + Tr 73 -8.2 -3.61715 | CGCTGAGTTTTGCAC GTCATGACTC TTAT GAGTGATGAC TTATTGCCAACAATG TERM 1405 1417194 - 1417234 + Tr 76 -6.7 -4.56113 | opp_overlap 1417210 1417211, overlap 1417196 GCCCCGAATCGCCAA TGGCGGAGCAAGACAAGGG CGG TTCTCGCCGTGCTCCGCTG TTTATTTACTCTGTT TERM 1406 1417196 - 1417232 + Tr 81 -9.3 -3.8721 | opp_overlap 1417210 1417211, overlap 1417194 CCCGAATCGCCAATG GCGGAGCAAGACAAGGG CGG TTCTCGCCGTGCTCCGC TGTTTATTTACTCTG YpsIP31758_1207 1418308 - 1417418 - | lipid kinase TERM 1407 1417543 - 1417577 + g 74 -6.5 -4.36508 | gap 1, overlap 1417540 TATCGTTCGGTGCAG TGATATCGA-GCCAAG GTAC CGTGGCGTCGATAACA TTCTTATTTTTCTCA TERM 1408 1418791 - 1418764 - R 100 -13.5 -5.55855 | GGGAAAAAAAGAAAA GGCCAGCCCAA GGGAGA TTGGGCTAGCC AAGGAGGTGGTTCCT YpsIP31758_1208 1420340 - 1418946 - | U32 family peptidase TERM 1409 1420555 - 1420533 - R 79 -7.7 -4.32046 | CGTGCAAAAATGAAA TGCGCGG TTAATGGCC CCGCGCA GGGATAAGTGGTCGT YpsIP31758_1209 1420976 - 1420638 - | hypothetical protein baeR 1421832 - 1421113 - | DNA-binding transcriptional regulator BaeR baeS 1423227 - 1421842 - | signal transduction histidine-protein kinase BaeS TERM 1410 1422223 - 1422235 + g 80 -4.1 -5.18726 | TTCAGGCAGGTGGGC GGTGA TGG TCATC TTTTTGTTCTGGAAG mdtD 1424655 - 1423258 - | multidrug efflux system protein MdtE TERM 1411 1423598 - 1423579 - G 73 -8.6 -3.9461 | GCCTTGGAAGAATAA CACTACTG GCAT CAGCAGTG TCCAACCCATGATTG TERM 1412 1424232 - 1424191 - G 100 -10.8 -4.75404 | gap 1 AAATTCCACTAAAAA CCCGCCCAGCGCCGGGCCA ACTAA TGGCCCAAT-CTGGCCGGG CAGTGTGACAAACGC mdtC 1427763 - 1424689 - | multidrug efflux system subunit MdtC mdtB 1430918 - 1427760 - | multidrug efflux system subunit MdtB TERM 1413 1429297 - 1429262 - G 78 -9 -3.97042 | GGATCAGCAAGTAAA GTATCACCGTCAGCAC CAGT GTGCTGAACGCGACAC TTAGGGTCAGCCACG TERM 1414 1430065 - 1430081 + g 78 -5.8 -4.67697 | overlap 1430066 ATTGCTGATTGAGTA TTGGCC CAGGC GGCCAG TTTGTTATTTTCCGC TERM 1415 1430886 - 1430876 - G 71 -8.2 -3.75817 | overlap 1430874 1430877 GGCGCAGAATAAACA GCCG TGA CGGC CCGCCACCGGGTGTT mdtA 1432252 - 1430918 - | multidrug efflux system subunit MdtA TERM 1416 1432256 - 1432267 + r 75 -2.2 -5.31877 | gap 1, overlap 1432256 TTGAGATTTCATGAT GG-CG AAG CGTCC TTTTTTATCGTGGCT potA 1433753 - 1432668 - | spermidine/putrescine ABC transporter, ATP-binding subunit YpsIP31758_1217 1435641 - 1434136 - | GntR family transcriptional regulator TERM 1417 1434240 - 1434257 + g 75 -5.5 -4.68593 | gap 1, opp_overlap 1434240 1434241, overlap 1434240 1434241 CATAACCGAGTAACA G-CCCTCG TCG CGGGGGAC TTTTTAAGTAATAGC TERM 1418 1434613 - 1434626 + g 75 -8.1 -4.26076 | GTAGCTGATACGCAT CCCTG GATA CAGGG TTTTACTGAAGGTAC TERM 1419 1434948 - 1434960 + g 74 -9.1 -3.67597 | ACACGTTGCGGATCC CCCAG TAG CTGGG TTCTTCAATCCAGGC TERM 1420 1435866 - 1435856 - g 71 -4.6 -4.50943 | opp_overlap 1435860 GAACAACGTAGAAAA GAGG CGA CCCC ACGTGGGATTGGTGT TERM 1421 1436884 - 1436855 - g 71 -4.3 -4.6856 | gap 1 GAAATACTGGAAAAA GCCCA-AATGAGCA ATG CGGCCATTGTGGGC ATTCGTGCGCGAGGA gabT 1435823 - 1437112 + | 4-aminobutyrate aminotransferase TERM 1422 1438092 - 1438114 + G 73 -7.6 -4.13767 | GCTAATTTACCCACT GCGCCAGCCA ACC TGGCTGAGGC TTTTCCCATGAACAA potD 1437165 - 1438193 + | spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein TERM 1423 1438663 - 1438642 - g 85 -11.6 -3.70149 | TCGACACTACGGAAA GTACCGGC TGAAGG GCCGGTAC GTGAAGCGCTAATCA potC 1438240 - 1439505 + | spermidine/putrescine ABC transporter, permease protein potB 1439567 - 1440415 + | spermidine/putrescine ABC transporter, permease protein YpsIP31758_1222 1440487 - 1440627 + | hypothetical protein TERM 1424 1440669 - 1440642 - T 100 -9.9 -5.09204 | ATACGCCAACAAAAA CTCTCAGTGCG AGATAA CTCACTGAGAG GAGAACATAATAGGG YpsIP31758_1223 1442038 - 1440686 - | putative chaperone TERM 1425 1442135 - 1442120 - R 86 -11.8 -2.91144 | overlap 1442117 TCACTCTCCAAATCA GGGCGG CAAC CCGCCC GCCGATGATGGGGAG mgtE 1443655 - 1442180 - | magnesium transporter YpsIP31758_1225 1443919 - 1443707 - | hypothetical protein TERM 1426 1444031 - 1444067 + r 86 -8 -4.65916 | gap 1, opp_overlap 1444035, overlap 1444034 CGCTCATGCTGTCAA TTGACGCACCGGGTGAT GACA ACCACCCGGTGCA-CGA TTTTATTAGCGTCAG TERM 1427 1444064 - 1444035 - R 100 -16.5 -2.52676 | opp_overlap 1444034 1444031 CATGCTGTCAATTGA CGCACCGGGTGAT GACA ACCACCCGGTGCA CGATTTTATTAGCGT ppx 1445643 - 1444084 - | exopolyphosphatase TERM 1428 1444576 - 1444588 + g 74 -6.3 -4.36914 | overlap 1444572 TTCCAGTTGGGGCTG TACCA GCT TGGTA TTTTGTGCCAACCAC ppk 1447717 - 1445654 - | polyphosphate kinase TERM 1429 1448941 - 1448931 - g 76 -8.2 -4.09685 | TTTGATGTGCGAAAA GGGC CAA GCCC ACAGTTCCATTTGAC pstC1 1448001 - 1450232 + | phosphate ABC transporter, permease protein PstC pstA2 1450232 - 1451944 + | phosphate ABC transporter, permease protein PstA TERM 1430 1452482 - 1452447 - g 72 -10.4 -2.94258 | gap 1, opp_overlap 1452460, overlap 1452460 ATGAAGTGAAGGACA GGCTGCGGGAAAATGCG TTT CGC-CTTTCCAGCGGCC AACAGCAACGGTTAG pstB2 1451972 - 1452784 + | phosphate ABC transporter, ATP-binding protein TERM 1431 1453754 - 1453764 + G 74 -6.8 -4.37658 | AAGGTGTTATTGGCT TGCC TGG GGCA TTTTATGACACAATT TERM 1432 1453887 - 1453897 + G 73 -2.4 -5.06414 | opp_overlap 1453875 1453873 ATACCTGGTCTCAAC AGGC ATG GCCC TTTTTCTTACAGCAC YpsIP31758_1231 1453028 - 1454221 + | fliB family protein TERM 1433 1454310 - 1454291 - T 88 -10 -4.20768 | ACGGGGAAGAAACAA TTGGGGCC ATCT GACCCCAA CGTATTAAGCATTTT speG 1454860 - 1454315 - | spermidine N(1)-acetyltransferase purN 1455727 - 1455089 - | phosphoribosylglycinamide formyltransferase TERM 1434 1455540 - 1455528 - G 78 -7.7 -4.36262 | AGAGCCAGATCAAAA CTGAC GCG GTCAG TAAAAGCCTTGGCAT purM 1456885 - 1455842 - | phosphoribosylaminoimidazole synthetase upp 1457320 - 1457946 + | uracil phosphoribosyltransferase TERM 1435 1457955 - 1457972 + F 100 -8.4 -6.11019 | opp_overlap 1457955 TAAATAACGATGATA GCCGAC GCGAAA GTCGGC TTTTTTTTGATTTTT TERM 1436 1458398 - 1458388 - g 79 -2.4 -5.47399 | CTAATTGTAAAAAAA GCGG GGA CCGG GTGGCTGGATGTCAT uraA 1458058 - 1459344 + | uracil transporter TERM 1437 1459518 - 1459487 - f 72 -9.6 -3.22077 | gap 1, opp_overlap 1459488 1459489, overlap 1459485 1459483 1459489 CGTATAAAAACCAGA TAGGGCTGAACTG CGGTTGC CAGTTCAGCCC-A TTTTTCACCAAATTC TERM 1438 1459488 - 1459518 + F 100 -11.2 -4.58283 | opp_overlap 1459487 1459485 1459483 1459489, overlap 1459489 GTATAAAAACCAGAT AGGGCTGAACTG CGGTTGC CAGTTCAGCCCA TTTTTCACCAAATTC TERM 1439 1459517 - 1459489 - f 100 -14.7 -3.16187 | opp_overlap 1459488 1459489, overlap 1459487 1459485 1459483 TATAAAAACCAGATA GGGCTGAACTG CGGTTGC CAGTTCAGCCC ATTTTTCACCAAATT TERM 1440 1459489 - 1459517 + F 100 -14.7 -3.34488 | opp_overlap 1459489 1459487 1459485 1459483, overlap 1459488 TATAAAAACCAGATA GGGCTGAACTG CGGTTGC CAGTTCAGCCC ATTTTTCACCAAATT hda 1459591 - 1460310 + | DNA replication initiation factor arsC 1460879 - 1460523 - | arsenate reductase (glutaredoxin) YpsIP31758_1239 1462470 - 1460986 - | M48 family peptidase TERM 1441 1462996 - 1463017 + G 71 -8.7 -3.63897 | overlap 1462994 CGTATTGGTTGTTCA CGATCCTGG GCGG CCAGTATCG TATTTGTGCTATTTG TERM 1442 1463374 - 1463387 + G 74 -9.5 -3.53091 | GTGCGCCGTGTTTTG CCGCG TAAC CGCGG TTTGGCCGGGCAGGT YpsIP31758_1240 1462801 - 1463865 + | putative permease PerM YpsIP31758_1241 1464128 - 1463955 - | hypothetical protein YpsIP31758_1242 1464142 - 1464288 + | hypothetical protein YpsIP31758_1243 1464466 - 1464681 + | hypothetical protein TERM 1443 1465776 - 1465791 + T 100 -10.4 -4.34711 | opp_overlap 1465778 TGTCAATAACCTCAA GAGCGC CAGA GCGCTC TTTTCCGTTAATTTT TERM 1444 1465857 - 1465874 + T 72 -9.9 -2.88768 | overlap 1465856 1465859 TTGGCGTAAGTAGTC CATCACG ATAT CGTGATG ATTATTAGTCTTGAA bcp 1466303 - 1465833 - | thioredoxin-dependent thiol peroxidase gcvR 1466875 - 1466306 - | glycine cleavage system transcriptional repressor TERM 1445 1466743 - 1466729 - G 74 -6.4 -4.36554 | TAGCAGCATAATAAA GGTGAA CTC CTCACC GAACATAGCCAGCCG TERM 1446 1466940 - 1466929 - H 93 -2.2 -6.15717 | TAAACATAAAAAAAA CCTG CTGC CAAG CGCTTACAACACAGT dapA 1467040 - 1467921 + | dihydrodipicolinate synthase TERM 1447 1468608 - 1468575 - g 85 -10.9 -3.86822 | GAAGGTTTGGATAAA GTGCGGGCTGACAGC GAGA GCAGTCAGGCCTCAC GTAAAGTCGGTACGC YpsIP31758_1248 1467939 - 1468997 + | lipoprotein TERM 1448 1469000 - 1469023 + F 90 -11 -4.00042 | opp_overlap 1469000, overlap 1469005 CGCGATAAAATAAAA CCAAAGGGGC TTCG GCCCCTTTCG TTATTTCATGACGAC TERM 1449 1469023 - 1469000 - f 100 -11 -5.18371 | opp_overlap 1469000 1469005 CGCGATAAAATAAAA CCAAAGGGGC TTCG GCCCCTTTCG TTATTTCATGACGAC TERM 1450 1469005 - 1469018 + F 85 -9.5 -4.16371 | opp_overlap 1469000, overlap 1469000 TAAAATAAAACCAAA GGGGC TTCG GCCCC TTTCGTTATTTCATG purC 1469068 - 1469781 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1451 1470386 - 1470399 + G 75 -5.9 -4.63218 | GTGGTACCGGTCAGT CGGTC ATGG GGCCG TTTTATTGCCCGGCA YpsIP31758_1250 1470001 - 1470870 + | metalloprotease-like protein YpsIP31758_1251 1470964 - 1471416 + | hypothetical protein TERM 1452 1472790 - 1472766 - g 75 -11.4 -2.57211 | overlap 1472765 1472768 ATCTGGTGGCACAAT CACTGGCCGC TCATG GCGGGCAGTG GCAGGCACCAACGCT YpsIP31758_1252 1471418 - 1473469 + | acetyltransferase YpsIP31758_1253 1473917 - 1473723 - | hypothetical protein YpsIP31758_1254 1474662 - 1473985 - | D-alanyl-D-alanine carboxypeptidase family protein TERM 1453 1474583 - 1474559 - G 73 -7.9 -4.08767 | gap 1 TGCATTGCTTGAAAA GCCT-CAGCC GCCTGT GGCTGTAGGC GATGAGCGCCACTTA dapE 1475786 - 1474659 - | succinyl-diaminopimelate desuccinylase TERM 1454 1475420 - 1475409 - G 71 -7.2 -3.9712 | opp_overlap 1475409 GGAGGTTATCATAAA GGCC AGGC GGCC TTTGTGGTCAGGGTG TERM 1455 1475409 - 1475420 + g 71 -7.2 -3.96624 | opp_overlap 1475409 GGAGGTTATCATAAA GGCC AGGC GGCC TTTGTGGTCAGGGTG YpsIP31758_1256 1476186 - 1475788 - | hypothetical protein YpsIP31758_1257 1476819 - 1476346 - | TPR repeat-containing protein TERM 1456 1476841 - 1476857 + H 71 -9.5 -2.96184 | overlap 1476840 1476843 CACACCGTGGCTTAT CAGCAAA CTG TTTGCTG CTTTAGATTTTGCTG TERM 1457 1477550 - 1477534 - g 75 -5.1 -4.74706 | opp_overlap 1477536 GGCAATATGGAAAAA CAAAGCC TAC GGCTCTA CTTACGAACCCGTTG TERM 1458 1478035 - 1478018 - g 73 -7.7 -4.03234 | opp_overlap 1478029 CTGCTCTCAGAGAAA GGCCAAA ATAT TCTGGCC AATCAGTCAGATATT YpsIP31758_1258 1477154 - 1478218 + | ABC transporter, periplasmic substrate-binding protein TERM 1459 1478230 - 1478261 + F 81 -9.4 -3.75517 | gap 1, overlap 1478230 ATAGTGGCTTTATCT GGG-TGCGCTTGCCT TAT GGGCATGCGCAGTCC TTGGTTTTATCGGCT TERM 1460 1478230 - 1478260 + F 70 -9.6 -2.84587 | overlap 1478230 ATAGTGGCTTTATCT GGGTGCGCTTGCCT TAT GGGCATGCGCAGTC CTTGGTTTTATCGGC TERM 1461 1478460 - 1478474 + G 73 -2.1 -5.1471 | TCAAAGGTACTGAGT CTTGA TGCGT TCAGG TTTATTTTTTCTGAT YpsIP31758_1259 1478313 - 1480082 + | ABC transporter, permease protein YpsIP31758_1260 1480075 - 1481145 + | ABC transporter, ATP-binding protein YpsIP31758_1261 1481159 - 1481365 + | hypothetical protein TERM 1462 1481369 - 1481380 + TF 71 -2.2 -5.10497 | CTCACCGTTTAATAT CGCA TCAT TGTG TTTTTTCAGTGGCTT YpsIP31758_1262 1481693 - 1481577 - | hypothetical protein TERM 1463 1482290 - 1482265 - gH 74 -9.7 -3.16881 | opp_overlap 1482265 1482264 1482262 TACTCAGCCGATGAA TGGCAGCCTCA AAAC CGAGGCTTCCA GTATTTTATGGGTTA YpsIP31758_1263 1481692 - 1483296 + | sulfatase TERM 1464 1483305 - 1483330 + FH 73 -9.7 -3.05993 | opp_overlap 1483297 1483298 1483305, overlap 1483307 GAATTAAGCCCCAAA GGCGGCAAGTA TTTT TTCTTGCCGTC TGTCTATCTCCATGA TERM 1465 1483744 - 1483717 - g 71 -9.2 -3.54543 | ATTGATGGCCCTAAA GAGTTACACGAT CGCT ACCGTGTGACTC GCTCAGGCAAAGGAT TERM 1466 1484364 - 1484378 + G 71 -5 -4.57073 | overlap 1484366 TGATCAGGACAGCGA TGGGAT GAA ATCCTA TTTTTGCGCAGGGTA YpsIP31758_1264 1483354 - 1484529 + | putative sulfatase regulator YpsIP31758_1265 1484770 - 1484910 + | hypothetical protein TERM 1467 1485088 - 1485110 + T 87 -4.7 -5.4505 | opp_overlap 1485088 GAATCCTCGCAAAAA GGCAGAACC GTAGA GGCACTGCC TTTTTTATTACCCGC TERM 1468 1485110 - 1485088 - T 79 -6.9 -4.58283 | opp_overlap 1485088 GAATCCTCGCAAAAA GGCAGAACC GTAGA GGCACTGCC TTTTTTATTACCCGC YpsIP31758_1266 1485824 - 1485276 - | putative metal-dependent hydrolase, membrane-bound TERM 1469 1486062 - 1486043 - R 74 -7.8 -4.01564 | overlap 1486044 1486046 TAAAATAGCCAGAAA GTAGGGCG GGGA CGCCCTAG GGTGAGTATTGCGCG TERM 1470 1486061 - 1486044 - R 83 -11.3 -2.99854 | overlap 1486043 1486046 AAAATAGCCAGAAAG TAGGGCG GGGA CGCCCTA GGGTGAGTATTGCGC TERM 1471 1486059 - 1486046 - R 71 -9.5 -3.0386 | overlap 1486044 1486043 AATAGCCAGAAAGTA GGGCG GGGA CGCCC TAGGGTGAGTATTGC YpsIP31758_1267 1486697 - 1486113 - | hypothetical protein TERM 1472 1486868 - 1486843 - R 76 -7.6 -4.20783 | ATCTGATGCAATAAA GCGGCATG GTTTTTTCGT CATGCCGC AGGGGAGAACCGACT acrD 1490059 - 1486928 - | aminoglycoside/multidrug efflux system TERM 1473 1487986 - 1488010 + g 74 -10.7 -2.77182 | opp_overlap 1487985, overlap 1487982 1487989 CGGCCATCAATTTAT CATGGCCATGG CCG CCATGGTCCTG TAATTCCATATCGAA TERM 1474 1489318 - 1489333 + g 71 -9 -3.5511 | overlap 1489316 CCCGTAGCGTAATTT CCCGAA ACTC TTCGGG TGTTTGTAGCTGGGA YpsIP31758_1269 1490474 - 1490752 + | hypothetical protein TERM 1475 1490750 - 1490770 + T 86 -2.6 -5.79595 | opp_overlap 1490750 1490753, overlap 1490753 TTAGCGGCCATTAAA TAGTGACA ACGGA TGTCAGTA TTTTTTATTTTCCAA narP 1491394 - 1490765 - | nitrate/nitrite response regulator protein NarP TERM 1476 1491928 - 1491895 - H 73 -2.6 -5.11613 | opp_overlap 1491898, overlap 1491883 AGATTATCTAAAAAA TAATTATCAAAGCA TCGTCT TGTTTTGGTAATTA TTCCCGTTAAATGAA TERM 1477 1492200 - 1492181 - H 73 -10 -2.93435 | TGAACGATTTATATA CGCATACG CATA CGCATGCG CGGGCACGCCAGAAG TERM 1478 1492437 - 1492448 + G 72 -5.8 -4.38154 | overlap 1492444 ATAGATTTTCAACGT GCTG AGTG CAGC TTTTGTCAGGCCTGT napF 1492233 - 1492736 + | ferredoxin-type protein NapF napD 1492726 - 1492992 + | assembly protein for periplasmic nitrate reductase TERM 1479 1494025 - 1494010 - g 85 -5.4 -5.26918 | gap 1 ACACGTTAGAAAAAA CCGC-CA AAA TGAGCGG TGTACCAGAAGATCA napA 1492989 - 1495481 + | nitrate reductase TERM 1480 1495776 - 1495744 - g 79 -2 -5.38549 | overlap 1495746 1495761 CCTAAACAACAAAAA CGGATGGC-GCTGAAC TAT GTTAACCAGCCA-CCG ATGATCCCACATAGC napB 1495576 - 1496031 + | diheme cytochrome c550 TERM 1481 1496007 - 1496019 + F 78 -9.1 -3.76224 | TGGTAATAGCTTCCA GCCAG CAC CTGGC TTTGGTCAGTAACCG napC 1496059 - 1496658 + | cytochrome c-type protein NapC TERM 1482 1496761 - 1496733 - f 77 -10.2 -3.22774 | opp_overlap 1496733 GAGAGTGATGATTAA CGCCCTGTGGAC TTTTC GTCGGCAGGGCG TTTTTACTGCAGCAG TERM 1483 1496733 - 1496761 + F 100 -12.4 -4.72272 | opp_overlap 1496733 GAGAGTGATGATTAA CGCCCTGTGGAC TTTTC GTCGGCAGGGCG TTTTTACTGCAGCAG YpsIP31758_1276 1496843 - 1497439 + | NUDIX family hydrolase TERM 1484 1497996 - 1497979 - g 85 -11.3 -3.90112 | opp_overlap 1497978 1497977, overlap 1497963 GTTTCGCCAACCAAA CCGTTGG CGAC CCAACGG GATTTGGCACTGGCG TERM 1485 1498756 - 1498724 - g 71 -7 -4.13728 | gap 1, opp_overlap 1498730, overlap 1498715 CAGAGATGGTGAAAA CCATGGCACCGAATC CGTT GATTCTG-GCCCTGG CAAACCCGGAACCGG TERM 1486 1499758 - 1499787 + G 88 -11.5 -3.82191 | GCAGCTGAAACCGTG CGCCGCTTTGG TATTGAGC CCAAAGTGGCG TTGTTGTCCCATTCC maeB 1497898 - 1500177 + | malic enzyme YpsIP31758_1278 1500409 - 1500549 + | hypothetical protein YpsIP31758_1279 1501057 - 1500599 - | hypothetical protein TERM 1487 1500841 - 1500854 + g 87 -5.3 -5.40072 | GTGGGATATCTGCGG TGATC ACCA GATCA TTTTTTTCCACCCGC hemF 1501986 - 1501057 - | coproporphyrinogen III oxidase TERM 1488 1501130 - 1501150 + g 76 -9.7 -3.65812 | AACGCGGCTTCTGCA CTATCTGCC TCT GGCTGATAG TTATATTCCCAGCGC TERM 1489 1501452 - 1501426 - G 74 -2.8 -5.04385 | overlap 1501439 CAGATCGTCAAAAAA CAGGCCGCCAAT ACC ACGGGCTTCCTG GCGATGTTTAATATA TERM 1490 1501545 - 1501563 + g 74 -8.9 -3.61715 | GGCTATGCGCTACCT GATGCCA ATGAA TGGCATC TTCTTCAAAGCCGTA YpsIP31758_1281 1502268 - 1502693 + | putative acetyltransferase YpsIP31758_1283 1503663 - 1504334 + | hypothetical protein YpsIP31758_1284 1504331 - 1505038 + | hypothetical protein YpsIP31758_1285 1505041 - 1505766 + | hypothetical protein TERM 1491 1505921 - 1505909 - f 70 -7.7 -3.64599 | opp_overlap 1505905 1505909 GCACCAGAGCTTAAA TTGGC TTT GCCAA TGCATTGATCAGCCG YpsIP31758_1286 1505926 - 1506093 + | putative acetyltransferase YpeA, truncation YpsIP31758_1287 1506564 - 1506980 + | hypothetical protein TERM 1492 1507026 - 1507055 + T 83 -12.2 -2.7012 | opp_overlap 1507027, overlap 1507023 1507018 CTATTGAGCAAAAAA ATGGTTTCCCGC ATTATC GCGGGAAACCAC TCATCTGGTATGTTC TERM 1493 1507054 - 1507027 - T 100 -16.4 -5.53991 | opp_overlap 1507026 1507023 1507018 TATTGAGCAAAAAAA TGGTTTCCCGCA TTAT CGCGGGAAACCA CTCATCTGGTATGTT YpsIP31758_1288 1509351 - 1507072 - | putative autotransporter protein TERM 1494 1507652 - 1507640 - G 76 -9.1 -3.96216 | CTGTTATCGAAATAA GTGCC GTA GGCAC CCAAGCTATAACTAT YpsIP31758_1289 1510269 - 1509856 - | OB-fold nucleic acid binding domain-containing protein YpsIP31758_1290 1510632 - 1511243 + | hypothetical protein TERM 1495 1511274 - 1511290 + G 71 -9.4 -3.4758 | TGCTATTATCACTTG GGCGCT ACCTC AGCGCC TTAATATTATTCCTA TERM 1496 1511332 - 1511355 + G 74 -6.8 -4.39386 | CTCTCTCTTCCCGCT TTATTTTGCG TTGT CGCAAGGTAA TTTTAATCGTTTCAG YpsIP31758_1291 1511258 - 1511398 + | hypothetical protein TERM 1497 1512274 - 1512264 - g 71 -8.2 -3.72576 | CTGCGTTTTAGCAAA CCGG TTA CCGG CAGCTATTATTTTGC YpsIP31758_1292 1511421 - 1512320 + | Dyp-type peroxidase family protein TERM 1498 1512358 - 1512380 + T 100 -13.5 -4.18044 | AAATATATCACCGTT GGCCGGATT GATGA AATCCGGCC TTTCATTATTTATCA YpsIP31758_1293 1513311 - 1512418 - | putative N-acetylneuraminate lyase YpsIP31758_1294 1514075 - 1513374 - | N-acetylmannosamine-6-phosphate 2-epimerase YpsIP31758_1295 1514579 - 1515451 + | N-acetylmannosamine kinase YpsIP31758_1296 1515533 - 1516003 + | hypothetical protein TERM 1499 1516055 - 1516068 + F 100 -9.5 -5.85737 | TTTTTGACCTTTTTA CCCGG TTTT CCGGG TTTTTTTATTGATCT TERM 1500 1516614 - 1516630 + G 73 -3.7 -4.88228 | overlap 1516608 1516614 1516605 1516616 CAAATTGCTGCGTCC TGCGGAT CGC ATCTGTA TTTTTGGTGTTGGCT YpsIP31758_1297 1516192 - 1517070 + | RpiR family transcriptional regulator TERM 1501 1517496 - 1517508 + F 79 -7.7 -4.28069 | opp_overlap 1517495 1517496, overlap 1517497 CTTATACACTCAAAT GGAGT TTA ACTCC TTTGTTGAATTCTAT TERM 1502 1517884 - 1517900 + G 73 -8 -3.99405 | TGGCCTGACACTGAT TCAGGC GACCA GCCTGA TTTCTGCTGCCTTCA YpsIP31758_1298 1517681 - 1519213 + | putative sialic acid transporter TERM 1503 1519279 - 1519300 + F 100 -8.7 -6.32017 | TAAACTGTTTTTCTT GCCCGGT GCGCGACA ACCGGGC TTTTTTTTATTTGTT cysP 1519546 - 1520583 + | thiosulfate transporter subunit TERM 1504 1521317 - 1521359 + G 100 -12.6 -3.96618 | TGATTACCCGGCAGC CAGCGCCATTGCCTCGGTGA TTC TGGCCGTGTCACTGGCGCTG TTGTTTAGCATTAAC cysU 1520583 - 1521416 + | sulfate/thiosulfate transporter subunit TERM 1505 1521647 - 1521659 + G 71 -4.8 -4.63527 | GCATTGATAACCGTG CCAG TGAAC CTGG TTTTTGGGGTGGTGC TERM 1506 1521861 - 1521875 + G 81 -5.7 -4.8667 | TCTCCTGGCCCGGTA TGGTG CTGGT CACCA TTTTTGTCACCTGTC cysW 1521416 - 1522291 + | sulfate/thiosulfate transporter permease subunit TERM 1507 1522962 - 1522972 + G 73 -2.4 -5.10163 | GAAGTCTGGCGTGAA CCGG CAA CCCG TTTTGTTTTGGAATT cysA 1522281 - 1523372 + | sulfate/thiosulfate transporter subunit cysM 1523543 - 1524421 + | cysteine synthase B YpsIP31758_1304 1525321 - 1524614 - | DNA-binding response regulator YpsIP31758_1305 1526862 - 1525318 - | sensor histidine kinase TERM 1508 1526905 - 1526880 - R 93 -11.9 -3.66378 | overlap 1526881 CATATCCCATGTAAA CGCTGAGCCAG CGTA CTGACTCAGCA TAAATGAACTTTTAT TERM 1509 1526904 - 1526881 - R 91 -13.2 -2.79505 | overlap 1526880 ATATCCCATGTAAAC GCTGAGCCAG CGTA CTGACTCAGC ATAAATGAACTTTTA TERM 1510 1527009 - 1526983 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 1526992, overlap 1526984 1526999 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1511 1527010 - 1526984 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 1526992, overlap 1526983 1526999 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YpsIP31758_1306 1528477 - 1527095 - | von Willebrand factor type A domain-containing protein TERM 1512 1528108 - 1528128 + g 90 -14.1 -3.06315 | GGTTATCGTAGGCCA CCACCGATA GCG TATCGGTGG TGTTAAGCATATTAA YpsIP31758_1307 1529214 - 1530395 + | aminotransferase, classes I and II YpsIP31758_1308 1530429 - 1531649 + | M24 family peptidase TERM 1513 1532174 - 1532202 + G 82 -11.7 -3.32698 | overlap 1532172 ATTCTTGGGGGGCAG TGGCTGGGCTTAT GGA AAAGGCCCGGCCA TATTATATACGCTCA YpsIP31758_1309 1531986 - 1533446 + | solute/sodium symporter (SSS) family protein TERM 1514 1534406 - 1534434 + G 74 -11 -2.81584 | gap 1, opp_overlap 1534385, overlap 1534405 GCAACGTATATTCCA CTGGCCTGGCCGG CTAA CCGGCAAGGC-AG ATTATTGGCTGATAT YpsIP31758_1310 1533506 - 1535152 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 1515 1535185 - 1535172 - T 74 -4.5 -4.83615 | TATTTTGTATAAAAA GGGCA TCTA TACCC AAAATAATTCGCGTT TERM 1516 1535363 - 1535350 - T 86 -6.7 -4.9645 | ATGATAACAATAAAA GGTCA CGGA TGACC TATCACGATGAAAGC YpsIP31758_1311 1537443 - 1535407 - | efflux ABC transporter, ATP-binding/permease protein YpsIP31758_1312 1538652 - 1537447 - | RND efflux transporter TERM 1517 1539082 - 1539048 - g 80 -2.7 -5.41746 | AAGTGCGGAAAAAAA GCCGTTTGCCGATCA TTATG TTAACGGCTAAAGGC GACAATATTGATCGG cpxR1 1538840 - 1539523 + | transcriptional regulatory protein CpxR TERM 1518 1539832 - 1539786 - g 100 -10.3 -5.27923 | opp_overlap 1539779 1539777 1539786, overlap 1539788 GAAGCGGACAAAAAA TATTTTTCTGTCTTACCTGCC GAGAT GGCAGATACGGCAGAAAAAGA TATATCGGCTCTCTC TERM 1519 1539786 - 1539832 + G 74 -11 -2.91239 | opp_overlap 1539786 1539788, overlap 1539779 1539777 GAAGCGGACAAAAAA TATTTTTCTGTCTTACCTGCCG AGA TGGCAGATACGGCAGAAAAAGA TATATCGGCTCTCTC TERM 1520 1539830 - 1539788 - g 100 -12.9 -4.26475 | opp_overlap 1539779 1539777 1539786, overlap 1539786 AGCGGACAAAAAATA TTTTTCTGTCTTACCTGCC GAGAT GGCAGATACGGCAGAAAAA GATATATCGGCTCTC YpsIP31758_1314 1539549 - 1540898 + | sensor histidine kinase CpxA TERM 1521 1541040 - 1541023 - T 100 -10.5 -4.30576 | opp_overlap 1541023 TGGCCAGCAGCAAAA CGGCGCC CTTG AGCGCCG TTTTTTATCGGTATC TERM 1522 1541023 - 1541040 + T 100 -9.8 -5.29782 | opp_overlap 1541023 TGGCCAGCAGCAAAA CGGCGC CCTTGA GCGCCG TTTTTTATCGGTATC YpsIP31758_1315 1541590 - 1541081 - | glucose-specific PTS system component TERM 1523 1541508 - 1541542 + g 79 -3.5 -5.34555 | opp_overlap 1541510 TTGACGATTTCACCA GACAGCGGTGCAACT ATCTC AATAACACTGCTGTC TTTTTTATCATCTGA ptsI 1543366 - 1541639 - | phosphoenolpyruvate-protein phosphotransferase TERM 1524 1542039 - 1542018 - G 72 -10.3 -3.01712 | opp_overlap 1542023, overlap 1542023 TCGTTTGTCCCAATA CTAAAGAAG TCAA CTTCTTTAG CTAAATGGCGAGCGA TERM 1525 1542300 - 1542311 + g 81 -5.8 -5.00196 | CGAATAGCACGCCAG CCCA GGAA TGGG TTTTCTTCTTTCGGC YpsIP31758_1317 1543672 - 1543415 - | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) TERM 1526 1544116 - 1544151 + r 100 -12 -3.74693 | opp_overlap 1544126, overlap 1544126 AACTTTGATGTACTC CACAAAAAAAGCACCC AGAA GGGTGCTTTTTTTGCA TTTAGTGCGGTAGCC TERM 1527 1544141 - 1544126 - R 100 -10.4 -5.626 | opp_overlap 1544116 1544126 TACTCCACAAAAAAA GCACCC AGAA GGGTGC TTTTTTTGCATTTAG TERM 1528 1544126 - 1544141 + r 100 -10.4 -5.58209 | opp_overlap 1544126, overlap 1544116 TACTCCACAAAAAAA GCACCC AGAA GGGTGC TTTTTTTGCATTTAG cysK 1545139 - 1544171 - | cysteine synthase A TERM 1529 1544930 - 1544948 + g 91 -13.2 -3.41073 | overlap 1544928 AACACCTGTATTCCC GCTGGTTG GTT CAACCAGC TCTTTGCCTGCGGTC TERM 1530 1545284 - 1545266 - R 100 -14.6 -3.97139 | TAATCCCAATAACAA GGGCGTGT TAG ACACGCCC ACCGAAAATGATCAT YpsIP31758_1319 1546030 - 1545296 - | putative sulfate transport protein CysZ TERM 1531 1546765 - 1546753 - g 71 -4.8 -4.59773 | overlap 1546728 CCGCATGTGGAAAAA CCTG CACAT CAGG TGGCTCCACAACAGC zipA 1546282 - 1547265 + | cell division protein ZipA TERM 1532 1547316 - 1547332 + F 100 -10.8 -5.5762 | opp_overlap 1547311 TCGAATTAACCCGAA CCCCCG CATGC CGGGGG TTTTTTATCTTTGGT TERM 1533 1548140 - 1548158 + G 70 -2.4 -4.91511 | opp_overlap 1548130 TGAAACTCTGCACTG GCAGTGAT CAG GTTATTGC TTTTTATCGTCAAAT ligA1 1547356 - 1549368 + | NAD-dependent DNA ligase LigA YpsIP31758_1322 1549388 - 1549603 + | hypothetical protein YpsIP31758_1323 1550051 - 1549704 - | hypothetical protein TERM 1534 1549863 - 1549874 + g 70 -2.2 -4.99861 | AATTTGGGTCTCAAT CAGT TGCT GCTG TTTTTGTAATTCCTC YpsIP31758_1324 1550805 - 1550200 - | hypothetical protein TERM 1535 1550707 - 1550696 - G 72 -5.8 -4.44245 | opp_overlap 1550703, overlap 1550697 1550698 AGATTACGGACAAAA CCTG CCGC CAGG CACCACTGGTTTAAT TERM 1536 1550993 - 1550963 - R 100 -13.4 -3.57144 | opp_overlap 1550971, overlap 1550964 1550971 TGTCGGAGCTGTAAA GCAAAAAACCGGCC AAA GGCCGGTTTTTTAA AGGGTGGTGGAGCTA TERM 1537 1550992 - 1550964 - R 100 -16.9 -2.74144 | opp_overlap 1550971, overlap 1550963 1550971 GTCGGAGCTGTAAAG CAAAAAACCGGCC AAA GGCCGGTTTTTTA AAGGGTGGTGGAGCT TERM 1538 1550971 - 1550985 + r 100 -12.8 -5.02074 | opp_overlap 1550964 1550963 1550971 CTGTAAAGCAAAAAA CCGGCC AAA GGCCGG TTTTTTAAAGGGTGG TERM 1539 1550985 - 1550971 - R 100 -12.8 -5.37593 | opp_overlap 1550971, overlap 1550964 1550963 CTGTAAAGCAAAAAA CCGGCC AAA GGCCGG TTTTTTAAAGGGTGG TERM 1540 1551433 - 1551415 - R 100 -12.4 -5.5762 | ATCAAATATAAAAAA GGCGACCA GAG TGGCCGCC TGATAACACGGAAAA gltX 1552873 - 1551458 - | glutamyl-tRNA synthetase TERM 1541 1554323 - 1554310 - R 84 -3.7 -5.4492 | TATAGATACAAAAAA GGTGC CGTA GCGCC TCCAGACTGCTGACA TERM 1542 1554413 - 1554387 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 1554396, overlap 1554388 1554403 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1543 1554414 - 1554388 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 1554396, overlap 1554387 1554403 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT nupC 1555716 - 1554532 - | nucleoside transporter NupC TERM 1544 1556082 - 1556068 - H 90 -5.8 -5.5112 | TCTACTAACAAAAAA GATAAT TCC ATTATC ACAAATGCGCTTGAT TERM 1545 1556935 - 1556945 + G 83 -8.2 -4.56914 | overlap 1556933 GCGATGATGGCAACC GCCG CTG CGGC TTTTCATTTCAATGG mtnH 1556167 - 1557396 + | manganese transport protein MntH TERM 1546 1557453 - 1557463 + T 71 -6.8 -4.16016 | opp_overlap 1557450 ATTCCATGAAAACCC GCCT GAC AGGC TTTATTGAGCGATGA YpsIP31758_1328 1557902 - 1557489 - | hypothetical protein YpsIP31758_1329 1559062 - 1558073 - | aldo/keto reductase family oxidoreductase YpsIP31758_1330 1560095 - 1559217 - | LysR family substrate binding transcriptional regulator TERM 1547 1559273 - 1559284 + g 93 -7.2 -5.40072 | overlap 1559266 GCCAATAGCCAGCAG GCCC CGGT GGGC TTTTTTTCGACCAAA YpsIP31758_1331 1560197 - 1560673 + | putative transmembrane protein TERM 1548 1561378 - 1561364 - g 73 -7.8 -3.98981 | opp_overlap 1561363 AATAGTGAAGAAGAA GACCAG ATT CTGGCC GTATTGCGCCAGGAG glk 1560854 - 1561825 + | glucokinase TERM 1549 1561887 - 1561857 - T 84 -9.8 -3.78934 | opp_overlap 1561859 GTGGGCGCAGAAGAA TATCTGCCGGGA GGATAAG TTCCGGCAGATA TGATGCGGAAGAAGG TERM 1550 1561859 - 1561885 + T 75 -10.2 -2.78384 | opp_overlap 1561857 GGGCGCAGAAGAATA TCTGCCGGGA GGATAAG TTCCGGCAGA TATGATGCGGAAGAA YpsIP31758_1333 1563150 - 1561903 - | hypothetical protein TERM 1551 1562624 - 1562650 + g 71 -9.4 -3.59293 | opp_overlap 1562624, overlap 1562620 GCATAGGTGACGACA CGGTTAGCATCA AAA TGTTGCTTACCG TTGCTTTCGGTTTGC TERM 1552 1562906 - 1562916 + g 73 -3.2 -4.91429 | CCGAGAATGGCACAA CAGC CGC GTTG TTTTATTTGCGCTTT TERM 1553 1563371 - 1563353 - H 70 -7.4 -3.88787 | overlap 1563343 1563355 GGATATGTTCATAAA CAGACCAT CTG ATGGTCAG CGTCGCTCGGACGGT TERM 1554 1563369 - 1563355 - H 71 -8.6 -3.53174 | overlap 1563353 ATATGTTCATAAACA GACCAT CTG ATGGTC AGCGTCGCTCGGACG TERM 1555 1563857 - 1563882 + G 93 -4.7 -5.52986 | GGTGCGCAAGTGCGT TCAGTGCCGTT GACC GAAGGCATTGA TTTTTTTGGTGAGCT TERM 1556 1563956 - 1563987 + G 93 -7.4 -5.40474 | gap 1, opp_overlap 1563961 ATCCTCGGTTTTCCA TCCAACCCAACAGCG CAA TG-TGTTGAGTTGGA TTTTTTTGAGCGAGT YpsIP31758_1334 1563416 - 1564651 + | aminotransferase YpsIP31758_1335 1564877 - 1565401 + | cytochrome b561 family protein YpsIP31758_1336 1565927 - 1565496 - | hypothetical protein YpsIP31758_1337 1566517 - 1567188 + | curli production assembly/transport component CsgG YpsIP31758_1338 1567170 - 1567571 + | putative lipoprotein TERM 1557 1567829 - 1567819 - g 73 -3.2 -4.93288 | overlap 1567806 AACATTTAAACAAAA TGGC ATG ACCA ACGCGGGTGATATTA YpsIP31758_1339 1567568 - 1568224 + | putative lipoprotein TERM 1558 1568431 - 1568418 - T 71 -6.7 -4.13767 | GGCTGCACCCCAAAA GTTGG ATAC CCAAC TGAATAAGGTGCAGT YpsIP31758_1340 1569038 - 1568469 - | putative ferredoxin-type protein NapF YpsIP31758_1341 1569700 - 1569035 - | TorD family cytoplasmic chaperone TERM 1559 1570201 - 1570182 - R 77 -6.4 -4.60487 | overlap 1570185 GATTAGCCGCAAAAA TAGCCGCT AATC AGCGGGTA AATCACCACATGGAA YpsIP31758_1342 1571013 - 1570237 - | putative anaerobic dimethyl sulfoxide reductase, C subunit TERM 1560 1570277 - 1570267 - G 71 -4.6 -4.53163 | CCAGAGATTATAAAA GGCA ATC CGCC CGGCTAATTCACCGA YpsIP31758_1343 1571632 - 1571015 - | putative anaerobic dimethyl sulfoxide reductase, B subunit YpsIP31758_1344 1574070 - 1571644 - | putative anaerobic dimethyl sulfoxide reductase, A subunit TERM 1561 1572601 - 1572577 - G 71 -4.3 -4.75288 | CCAGACCAAAATAAA TTCGCACAATG ACT CATCTTGCAAA ATAGTATTGGTTTTA TERM 1562 1572677 - 1572687 + g 89 -3.2 -5.63012 | CAAAGAAACTTAATA TTGG TAT CCAG TTTTTCTTTATTTTT TERM 1563 1574428 - 1574443 + H 89 -6.2 -5.28481 | overlap 1574440 ATCTACTTCACTTTC TTGAGA AAAG TCTCAA TTTTTTGATTAAATC YpsIP31758_1345 1574901 - 1575749 + | hypothetical protein TERM 1564 1576051 - 1576032 - T 100 -13.6 -4.11346 | opp_overlap 1576028 ACACGTAAATAATAA GGGATGGC GTAG GCCATCCC CGAATAAATTAATAC YpsIP31758_1346 1576539 - 1576060 - | hypothetical protein TERM 1565 1576717 - 1576742 + H 79 -10.7 -3.00986 | overlap 1576714 AAATTATAATGGTAG TGTTTTGTTTT TTTT AAAACAAAACA TAATTTAATGTGGTT YpsIP31758_1347 1577005 - 1577529 + | hypothetical protein fbpC 1578638 - 1577589 - | iron(III) ABC transporter, ATP-binding protein fbpB 1580221 - 1578635 - | iron(III) ABC transporter, permease protein TERM 1566 1578854 - 1578842 - G 71 -9.1 -3.50737 | overlap 1578838 AGCCAGAAAGACTAA TGCGG CAC CCGCA GCGGCGCCGGGAGCA TERM 1567 1579815 - 1579801 - G 73 -3.4 -4.99035 | overlap 1579802 TCACCGAGATAAAAA CGCCGG CGG CCAGCC CATTCATTGAGGGGA TERM 1568 1579873 - 1579863 - G 74 -6.8 -4.386 | opp_overlap 1579867, overlap 1579864 TAACTTTGTACAAAA GCAG GCA CTGC CAGTGGTGCTATTGC TERM 1569 1580264 - 1580250 - R 71 -8.5 -3.53091 | ACTCGGTTTGTTAAA CGCCC GCAGG GGGCG GAGTAAAACGGATTA fbpA 1581296 - 1580277 - | iron(III) ABC transporter, permease protein, periplasmic iron(III)-binding protein TERM 1570 1581463 - 1581487 + H 73 -10.1 -3.06133 | opp_overlap 1581467, overlap 1581465 1581467 AATGTTGTGAGGGGA TATAGGGCG GTAAACG CGCCCTATA TTGCGTCAGCCATTG TERM 1571 1581717 - 1581734 + G 79 -3.3 -5.26875 | opp_overlap 1581719, overlap 1581718 1581719 TGCAACCCCGTCAGA TAGCCCT GTTC AGGGCGG TTTTTTACTTGAGCC mltB 1581625 - 1582719 + | murein hydrolase B TERM 1572 1582757 - 1582729 - f 78 -5.9 -4.8083 | opp_overlap 1582729 CAATAGCATGAAAAA GAGGGCCGCATTA GGG TTATGCCGTCCTC TTTTCTTAACGATTT TERM 1573 1582729 - 1582757 + F 86 -8.1 -4.6635 | opp_overlap 1582729 CAATAGCATGAAAAA GAGGGCCGCATTA GGG TTATGCCGTCCTC TTTTCTTAACGATTT YpsIP31758_1352 1582941 - 1583054 + | hypothetical protein YpsIP31758_1353 1583960 - 1584562 + | LuxR family transcriptional regulator TERM 1574 1584921 - 1584884 - T 83 -12.2 -2.73994 | opp_overlap 1584887, overlap 1584881 ATTCTTCCAATACGA CCACGTCATGCTAAGT CGGGTT ATTTAGCATGACGTGA TATCGCTCAAAAATT TERM 1575 1584887 - 1584918 + T 88 -12.5 -2.64616 | opp_overlap 1584884 1584881 CTTCCAATACGACCA CGTCATGCTAAGT CGGGTT ATTTAGCATGACG TGATATCGCTCAAAA YpsIP31758_1354 1585417 - 1584935 - | hypothetical protein YpsIP31758_1355 1587096 - 1585414 - | OmpA domain-containing protein TERM 1576 1586121 - 1586142 + g 77 -6.5 -4.64334 | overlap 1586106 1586105 1586122 CGGGGATAGGTTTTA TCACCGGTG TTTT CACCCGTGG TTTTATTGCAGGCTT TERM 1577 1587005 - 1586991 - G 76 -7.2 -4.34912 | opp_overlap 1586990 AAGTAATGAAAATAA CGTTAT TCC ATAACG CATTTCCCTTAAAAT YpsIP31758_1356 1587798 - 1587097 - | hypothetical protein YpsIP31758_1357 1589132 - 1587795 - | hypothetical protein TERM 1578 1588123 - 1588136 + g 88 -2.4 -5.75342 | opp_overlap 1588123 GATGTGGGAAGATCA GTGA AGAAGC TCAC TTTTTTTTCACCCGC TERM 1579 1588157 - 1588173 + g 81 -5.7 -4.89233 | TTTCACCCGCGGCAT CCGGATG CAC CGCCCGG TTTTTAATATTGATG YpsIP31758_1358 1590203 - 1589172 - | hypothetical protein TERM 1580 1589996 - 1590008 + g 78 -5.5 -4.85599 | TCACTGCCAAGCCTT GTGGT TGT GCCAC TTTTTCTAGGATAGG YpsIP31758_1359 1591403 - 1590210 - | ImpA domain-containing protein TERM 1581 1590656 - 1590676 + g 73 -9.7 -3.29511 | CAATAGGTTCTGGCA CCACGATAG GCG CTATCGGGG TTATCGCGGCATCAA YpsIP31758_1360 1592527 - 1591502 - | hypothetical protein TERM 1582 1592323 - 1592302 - G 85 -12.3 -3.28712 | overlap 1592314 TCCCGTCTTTCATAA CCGCATGAG ATAT CTCACGCGG AGAGAACGTCATGTG TERM 1583 1592338 - 1592383 + g 73 -7.5 -4.26076 | gap 1 GAGAGAACGTCATGT GCGCACTTTGCCCGATGCGGAA GGC TTCCTGTTCAGGCAAGG-GCGC TTTTCCTGGCGCTGG YpsIP31758_1361 1594407 - 1592527 - | hypothetical protein TERM 1584 1596604 - 1596592 - g 71 -9.1 -3.54424 | overlap 1596574 1596575 CGGCACTTTGGTAAA GCGCA GGA TGCGC GTACTGAGCAGTTGA YpsIP31758_1362 1595191 - 1597848 + | Clp protease-associated protein ClpB TERM 1585 1598015 - 1597984 - f 100 -8.2 -5.52096 | opp_overlap 1597984 1597982 AAAGGCAATAAAAAA TAGCTAATATTGGC ATGA GCGAATATTAACTA TATGTTTAATAAATC YpsIP31758_1363 1598059 - 1598604 + | frimbrial protein TERM 1586 1598673 - 1598707 + F 70 -10 -2.50252 | opp_overlap 1598666, overlap 1598672 1598669 GTAAAGCATAACAGT TTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAA GTCTGTTATAAAGAT YpsIP31758_1364 1598761 - 1599522 + | pili assembly chaperone TERM 1587 1601810 - 1601820 + G 77 -8.2 -4.15565 | GCGGGCCCACGACTT GGCG ATG CGCC TTTTGCCATCATCAA YpsIP31758_1365 1599821 - 1602322 + | fimbrial usher protein YpsIP31758_1366 1602307 - 1602915 + | fimbrial protein YpsIP31758_1367 1603021 - 1603545 + | hypothetical protein TERM 1588 1603853 - 1603839 - g 71 -8.6 -3.75024 | TTGCACCACCAAGAA TTCCAG TCT CTGGAA AGCGCATGGCGTGGG YpsIP31758_1368 1603569 - 1605071 + | hypothetical protein TERM 1589 1605216 - 1605240 + F 70 -9.5 -2.84955 | GCATGGGACCTTTAT TCATTCAGTAT TCA ATATTGAATGA TGTAGTAATGGTTGT TERM 1590 1605557 - 1605567 + G 78 -5.4 -4.8622 | GGTTCAGGTAAAGCC TCTG TTT CAGA TTTTTGCTTCGCACA YpsIP31758_1369 1605404 - 1605889 + | hypothetical protein TERM 1591 1605915 - 1605937 + F 100 -15.6 -4.72497 | opp_overlap 1605915 CATGTCGCTATCAAA CTTGCCACCC TTG GGGTGGCAGG TTTTCTTAATAAGTG TERM 1592 1605937 - 1605915 - f 100 -13.4 -3.72893 | opp_overlap 1605915 CATGTCGCTATCAAA CTTGCCACCC TTG GGGTGGCAGG TTTTCTTAATAAGTG YpsIP31758_1370 1606163 - 1606702 + | putative lipoprotein TERM 1593 1607419 - 1607432 + G 75 -5.3 -4.76041 | AGAAATTGTCGATTA TTTGC TACT GCAAA TTTTTAATAAATATG TERM 1594 1607966 - 1607950 - g 79 -3.6 -5.31456 | opp_overlap 1607955, overlap 1607952 TGAATTGATAAAAAA TGGCCC CTTCT GGGACA AGGTTTCCAATGCTG YpsIP31758_1371 1606706 - 1608055 + | hypothetical protein TERM 1595 1608079 - 1608095 + G 73 -7.2 -4.25104 | AGTGATTTGAACCTT GGGGGC TCAAT GCCTCC TTTTGATCAAAGCAG YpsIP31758_1372 1608052 - 1609428 + | OmpA domain-containing protein TERM 1596 1609636 - 1609646 + G 76 -8.2 -4.05446 | overlap 1609635 TAGGTTTTTGGTACG GCGC ACC GCGC TTTGTCATTGCCGCC TERM 1597 1609837 - 1609823 - g 77 -6.4 -4.58663 | opp_overlap 1609823 AGCATTGGCGAAAAA TCCAGC GTT ACTGGA TAACTTCATTAAGCA TERM 1598 1611201 - 1611166 - g 73 -7 -4.14739 | gap 1, opp_overlap 1611176 TGAGTTATGCCAAAA CGTCCAATGA-GCAGAT CTT ACCTGCGTTATTGAACG CGACACAGCAGTTAC TERM 1599 1612236 - 1612209 - g 82 -5.6 -5.05782 | overlap 1612215 AGCCAGGCTAAAAAA TTACAAGAAACG ATCG CGTTTCGTGAAA ATAAACTGATTAAAG TERM 1600 1612230 - 1612215 - g 70 -7.6 -3.81575 | overlap 1612209 GCTAAAAAATTACAA GAAACG ATCG CGTTTC GTGAAAATAAACTGA TERM 1601 1612565 - 1612554 - g 71 -4.4 -4.69559 | AAATTTGAAAATAAA GTGA TTAC TCAC ACGTCCAAAGCGATT TERM 1602 1613044 - 1613030 - g 73 -10 -3.36492 | opp_overlap 1613028 GGCCCAACGCCAGAA GGCATC CGC GATGCC CGATATTCTTTTTCG YpsIP31758_1373 1609437 - 1613264 + | hypothetical protein TERM 1603 1615951 - 1615926 - g 76 -8.9 -3.9122 | overlap 1615908 1615905 1615944 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1604 1615969 - 1615944 - g 76 -8.9 -3.9122 | overlap 1615926 1615962 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAGACAACGGCA TERM 1605 1616023 - 1615998 - g 71 -8.9 -3.59202 | overlap 1615980 1616016 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1606 1616041 - 1616016 - g 76 -8.9 -3.9122 | overlap 1615998 1616034 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1607 1616059 - 1616034 - g 76 -8.9 -3.9122 | overlap 1616016 1616052 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAGACAACGGCA TERM 1608 1616095 - 1616070 - g 71 -8.9 -3.59202 | overlap 1616052 1616088 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAGACAACGGCA TERM 1609 1616131 - 1616106 - g 71 -8.9 -3.59202 | overlap 1616088 1616124 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAGACAACGGCA TERM 1610 1616167 - 1616142 - g 71 -8.9 -3.59202 | overlap 1616124 1616160 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAGACAACGGCA TERM 1611 1616221 - 1616196 - g 71 -8.9 -3.59202 | overlap 1616178 1616214 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAAACAACGGCA TERM 1612 1616257 - 1616232 - g 78 -8.9 -4.07133 | overlap 1616214 1616250 CACCGCCAGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1613 1616275 - 1616250 - g 76 -8.9 -3.9122 | overlap 1616232 1616268 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAAACAACGGCA TERM 1614 1616296 - 1616286 - g 76 -8.2 -4.07133 | overlap 1616268 1616287 CACCGCCAGAAACAA CGGC ACC GCCG GAACCGACGCGAACA YpsIP31758_1374 1613591 - 1616341 + | Rhs element Vgr protein TERM 1615 1616395 - 1616361 - f 89 -11.4 -3.44377 | opp_overlap 1616359 1616357 1616356 1616354, overlap 1616380 ATAGATAAAAGGTAA GCATGTTCTGCGTGGG AAA CACACGTAGAGCATGC GGTCTCTGATTTTTC YpsIP31758_1375 1616440 - 1616700 + | hypothetical protein YpsIP31758_1376 1616706 - 1617548 + | hypothetical protein YpsIP31758_1377 1617568 - 1618374 + | ImpE family protein TERM 1616 1618464 - 1618453 - g 88 -2.2 -5.80951 | overlap 1618446 ATGGAAAAGAAAAAA CAGT TTTT ACCG GCGTTGTTAGAGCGT YpsIP31758_1378 1618438 - 1618917 + | hypothetical protein YpsIP31758_1379 1618942 - 1619289 + | hypothetical protein TERM 1617 1619354 - 1619326 - T 78 -8.9 -3.83921 | opp_overlap 1619326 1619338 TCCAAGATAATAGAA GGGCTCTCTGC TTGGGTG GCAAAGAACCC ATTAATGCATTAGCT phnA 1619705 - 1619364 - | alkylphosphonate utilization operon protein PhnA TERM 1618 1619772 - 1619788 + r 80 -3.7 -5.38326 | GGTTACTGTATTGAT GTGTATA CAT TTTACAC TTTTTATTTAATTAA YpsIP31758_1381 1622066 - 1620081 - | hypothetical protein YpsIP31758_1382 1622667 - 1622125 - | LemA family protein TERM 1619 1622995 - 1622981 - R 74 -7.8 -3.91364 | opp_overlap 1622981 1622978 AAACGGATATAACAA GCCCCT CCT AAGGGC TAGTTACTGGTTCGA YpsIP31758_1383 1623522 - 1623343 - | hypothetical protein TERM 1620 1623547 - 1623534 - R 75 -5.3 -4.84359 | opp_overlap 1623534 GCATGTTGATAAAAA TTCCA TCCG TGGAA CTTATAACCATGCAC YpsIP31758_1384 1624554 - 1623610 - | hypothetical protein YpsIP31758_1385 1625438 - 1624575 - | hypothetical protein TERM 1621 1624788 - 1624775 - G 82 -5.3 -5.07275 | opp_overlap 1624775 GCATAGATATAAAAA CTTCT TTAC AGAAG TTATAGATAAGCCCA TERM 1622 1625412 - 1625386 - G 100 -6.6 -5.66868 | AAGGAAGTAAAAAAA GACCTGCGAAAA GTC TTTGCGCAAATC ATATTCAACTTATCA TERM 1623 1625567 - 1625553 - H 82 -2.1 -5.65927 | TATGCAAATAAAAAA CAAGA TAACC TCTCG TAGAACGTTGTTCTG YpsIP31758_1386 1626290 - 1626757 + | hypothetical protein TERM 1624 1627231 - 1627245 + GF 73 -5.6 -4.42464 | overlap 1627233 AAATCTGACCTGTAT CCGCGA TGA TCGCTG TTTATTTCAGCAGTT ccmA 1627202 - 1627858 + | cytochrome c biogenesis protein CcmA ccmB 1627828 - 1628487 + | heme exporter protein CcmB ccmC 1628550 - 1629287 + | heme exporter protein CcmC TERM 1625 1629326 - 1629337 + G 75 -5.8 -4.61868 | overlap 1629322 GAATTTTTTGCCATG GGCA ACTA TGCC TTTTATGTCTGGCTC ccmD 1629284 - 1629646 + | heme exporter protein D ccmE 1629643 - 1630137 + | cytochrome c-type biogenesis protein CcmE TERM 1626 1631151 - 1631133 - g 73 -8.1 -4.09685 | gap 1 CTGTATGCGGTAAAA GGC-GCGC AGGT GCGCAGCC GGACTCAGCATGAAG TERM 1627 1631194 - 1631208 + G 71 -8.6 -3.62046 | AGACTTTCCTGCTCG GCAACA ATG TGTTGC TTATTGCCGCAATGC ccmF 1630134 - 1632104 + | cytochrome c-type biogenesis protein CcmF dsbE 1632101 - 1632667 + | thiol:disulfide interchange protein DsbE YpsIP31758_1394 1632664 - 1633176 + | putative cytochrome c-type biogenesis protein ccmI 1633176 - 1634402 + | cytochrome c-type biogenesis protein CcmI TERM 1628 1634412 - 1634395 - f 78 -5.6 -4.88895 | AAATAAATAAACAAA TCCCTT AAGTGA AAGGGA TAGACAGACTTTCAT vacJ 1634438 - 1635202 + | lipoprotein VacJ TERM 1629 1635281 - 1635254 - T 100 -17.2 -4.18018 | opp_overlap 1635254 1635256 1635261, overlap 1635261 CCGCCGTATTCAAAA TAGAAAAGCGCC ATCA GGCGCTTTTCTA TTGGATAAGGTGATG TERM 1630 1635254 - 1635281 + T 100 -17.2 -3.07113 | opp_overlap 1635254 1635261, overlap 1635256 1635261 CCGCCGTATTCAAAA TAGAAAAGCGCC ATCA GGCGCTTTTCTA TTGGATAAGGTGATG TERM 1631 1635256 - 1635279 + T 100 -15.4 -3.09327 | opp_overlap 1635254 1635261, overlap 1635254 1635261 GCCGTATTCAAAATA GAAAAGCGCC ATCA GGCGCTTTTC TATTGGATAAGGTGA TERM 1632 1635261 - 1635274 + T 100 -9.5 -4.68724 | opp_overlap 1635254 1635261, overlap 1635256 1635254 ATTCAAAATAGAAAA GCGCC ATCA GGCGC TTTTCTATTGGATAA TERM 1633 1635274 - 1635261 - T 100 -9.5 -4.90471 | opp_overlap 1635261 1635256 1635254, overlap 1635254 ATTCAAAATAGAAAA GCGCC ATCA GGCGC TTTTCTATTGGATAA fadL 1636574 - 1635309 - | long-chain fatty acid outer membrane transporter YpsIP31758_1398 1636988 - 1637284 + | hypothetical protein TERM 1634 1637341 - 1637321 - f 93 -12.6 -3.18239 | opp_overlap 1637321 TACATACCTGACCAA CGCGAAGC CTTTT GCTTCGCG TTATTACTTTAGATG TERM 1635 1637321 - 1637341 + F 100 -12.6 -3.90425 | opp_overlap 1637321 TACATACCTGACCAA CGCGAAGC CTTTT GCTTCGCG TTATTACTTTAGATG TERM 1636 1637507 - 1637519 + F 79 -7.7 -4.34559 | TAACAATGTTCGGAT CAGGT CAG ACCTG TTATTTGTTATCTTT TERM 1637 1638648 - 1638619 - g 76 -9.3 -3.85698 | opp_overlap 1638618 1638616 CCTTCGCCGCACAAA CACTGGCTAACCT GAAA ATGTTTGCCAGTG ATACTTTTGCTCGCG fadI 1637571 - 1638881 + | 3-ketoacyl-CoA thiolase TERM 1638 1639720 - 1639701 - g 71 -6.3 -4.20106 | AAACGCTAGCTAAAA CGCGGGG GCACTA CCCGGCG GCTGAACGTATTATT TERM 1639 1640280 - 1640305 + G 74 -11.2 -2.78813 | overlap 1640269 1640279 1640298 1640300 CCATCAGCCAGATTG CTGCTTTGGC GCAACG GCCAGAGCAG GTTATTGGCCTGCAC TERM 1640 1640447 - 1640430 - g 73 -7 -4.21827 | GGAAACAGGGCAAAA CAGCCA TTGTGG TGGCTG ATCGCGCTGGGTTCT fadJ 1638962 - 1641205 + | multifunctional fatty acid oxidation complex subunit alpha YpsIP31758_1401 1641223 - 1641339 + | hypothetical protein sixA 1641790 - 1642281 + | phosphohistidine phosphatase TERM 1641 1642350 - 1642369 + T 100 -15 -3.8579 | ATCAACGTCTAACTG GCGCGGCA TTCT TGCCGCGC TTTCGCTTATTGACT YpsIP31758_1403 1643063 - 1642533 - | hypothetical protein YpsIP31758_1404 1643433 - 1644365 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase aroC 1644442 - 1645527 + | chorismate synthase TERM 1642 1645659 - 1645681 + G 71 -9.1 -3.57462 | GGTGGCTTTGCTAAT GGTTGCGTG ATTGG CGCGCAGCC TTTGCCGCTCGAGTC YpsIP31758_1406 1645533 - 1646360 + | penicillin-insensitive murein endopeptidase TERM 1643 1646448 - 1646478 + G 74 -11.1 -3.04263 | gap 1, overlap 1646445 ATTGATTCCATTGCC G-GCGGGGGCGGCT TGTT AACCGTCCCCGCAC TGTTAGCGGTGGGAT YpsIP31758_1407 1646364 - 1647170 + | hypothetical protein TERM 1644 1647216 - 1647244 + F 82 -10.3 -3.66883 | AATTTAGGCACCCAC CACCGCTAAATAC GGT GACTTTAGCGGTG TTTACCCTCTCTTAC TERM 1645 1647392 - 1647405 + G 80 -6.7 -4.77438 | overlap 1647372 CGATGAAGAATCTCC TCACC ATCG GGTGA TTTTTGCTCATGGCT YpsIP31758_1408 1647270 - 1647812 + | hypothetical protein YpsIP31758_1409 1647870 - 1648148 + | hypothetical protein YpsIP31758_1410 1650395 - 1648326 - | 5-methylaminomethyl-2-thiouridine methyltransferase fabB 1650567 - 1651790 + | 3-oxoacyl-(acyl carrier protein) synthase I TERM 1646 1651830 - 1651861 + T 90 -11.6 -3.62046 | opp_overlap 1651836 GATTCAGATTTACTC CCCAAAGCCTACGA GAGA TCGTAGGCTTGAGG TTATTGACAAAGTGC TERM 1647 1651855 - 1651836 - T 91 -12.2 -3.55761 | opp_overlap 1651830 GATTTACTCCCCAAA GCCTACGA GAGA TCGTAGGC TTGAGGTTATTGACA TERM 1648 1651934 - 1651960 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1651923, overlap 1651929 1651935 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1649 1651935 - 1651961 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1651923, overlap 1651929 1651934 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1650 1652025 - 1652044 + T 100 -12.2 -5.24003 | TGTCAGCAGTCTGAA GCCTACGA GAGA TCGTAGGC TTTTTACTTTTTATT YpsIP31758_1412 1652889 - 1652197 - | aspartate racemase family protein TERM 1651 1652966 - 1652927 - H 72 -9.2 -3.14344 | gap 1 GACTGGGGTGAGCAA GGGCAGCTAACTCCCTGCA TCT TGAAGGGCGACAGC-GCCC CCACGTTATAAGTGA YpsIP31758_1413 1653680 - 1654210 + | fimbria protein TERM 1652 1654236 - 1654282 + T 75 -10.5 -2.87564 | gap 1, opp_overlap 1654218 1654235 1654247, overlap 1654247 1654266 TAAGCTGTCTAAATT GCTTA-AAAAAAGCATGTGGAA GATA TTCTGCATGCTTTTTTATATGC TGTATAAAAGAATGA TERM 1653 1654247 - 1654270 + T 100 -8.2 -5.40625 | opp_overlap 1654235 1654247, overlap 1654236 1654266 AATTGCTTAAAAAAA GCATGTGGAA GATA TTCTGCATGC TTTTTTATATGCTGT TERM 1654 1654270 - 1654247 - T 84 -3.8 -5.41746 | opp_overlap 1654247 1654236 1654266, overlap 1654235 AATTGCTTAAAAAAA GCATGTGGAA GATA TTCTGCATGC TTTTTTATATGCTGT TERM 1655 1654473 - 1654456 - T 76 -7 -4.56597 | GCGGTTTGTTAAAAA GCGACT GATATT AGTCGC TCAGACTGCTGACAA TERM 1656 1654562 - 1654536 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1654545, overlap 1654537 1654552 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1657 1654563 - 1654537 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1654545, overlap 1654536 1654552 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1658 1654642 - 1654659 + T 100 -7.7 -5.38398 | TGTCAATAACCTCAA GCGACTG ATAT TAGTCGC TTTTTGTATTTTTGT YpsIP31758_1414 1655775 - 1654738 - | flagella biosynthesis regulator YpsIP31758_1415 1656977 - 1656060 - | integral membrane protein YpsIP31758_1416 1657055 - 1657174 + | hypothetical protein YpsIP31758_1417 1657161 - 1657946 + | AraC family transcriptional regulator pdxB 1657993 - 1659120 + | erythronate-4-phosphate dehydrogenase TERM 1659 1659182 - 1659160 - f 80 -9.1 -4.0257 | opp_overlap 1659162, overlap 1659153 1659162 CGTAAAAATTAATAA CAGGGCGGT GTGTT ACCGCCCTT GCTGTTCAATAACGT TERM 1660 1659162 - 1659180 + F 95 -12.4 -3.38072 | opp_overlap 1659160 1659153 1659162 TAAAAATTAATAACA GGGCGGTG TGT TACCGCCC TTGCTGTTCAATAAC TERM 1661 1659180 - 1659162 - f 90 -11.7 -3.58785 | opp_overlap 1659162, overlap 1659160 1659153 TAAAAATTAATAACA GGGCGGT GTGTT ACCGCCC TTGCTGTTCAATAAC TERM 1662 1660164 - 1660128 - g 76 -10.7 -3.11459 | opp_overlap 1660126 1660128 AAGATGATTATCCAA CCCAGGTCAGCGACGCC TCC GGCAGCGATGCCCTGAG TATTGGTTGCGTTCG YpsIP31758_1419 1659290 - 1660300 + | putative semialdehyde dehydrogenase TERM 1663 1660403 - 1660387 - f 87 -6.5 -5.1356 | opp_overlap 1660387 GCTCAGCAAGAAAAA CCGGC AGAAGTG GCCGG TTTGAAAATTGCGTT TERM 1664 1661154 - 1661175 + G 73 -5.1 -4.58395 | overlap 1661151 CCACTTCGCGTTACC CAAAGTTCC TATG GGGCCTTTG TTTTTGGCGGATGAC truA 1660405 - 1661199 + | tRNA pseudouridine synthase A YpsIP31758_1421 1661356 - 1662018 + | hypothetical protein TERM 1665 1662128 - 1662164 + F 78 -2.2 -5.4505 | gap 1, overlap 1662137 1662139 CAATCCAAGTTTCGG TGCCTTAGCCACGTCGC ACTG GCG-TGTATCTCAGGCA TTTTTTATTGGAGAG TERM 1666 1662997 - 1662975 - g 71 -4.9 -4.56775 | gap 2, opp_overlap 1662975, overlap 1662977 ACCGTGCGCGAAAAA CTGCCGCCTGG CTT CCAG-C-GCAG TGAGTTTCTGATTGA accD 1662249 - 1663163 + | acetyl-CoA carboxylase subunit beta TERM 1667 1663173 - 1663201 + F 76 -10.4 -2.90804 | gap 1, opp_overlap 1663173, overlap 1663172 GTCTGATTAACTCAA CGGGCATCACTCT TGTA AGA-TGGTGCCCG GTTATTGTGCCTTAT TERM 1668 1663436 - 1663460 + G 95 -13.5 -3.93262 | opp_overlap 1663428 1663423 CATCAAACTCCCCAA GCCACGTCGCC TTT GGCCGCGTGGC TTTGCTATCTTGAGC folC 1663412 - 1664716 + | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase TERM 1669 1665259 - 1665238 - g 82 -5.1 -5.05113 | CCGATAGAAACAAAA CCAGCAG AGAAAAAA CCGCTGG AAGTGAAACCTAAGC TERM 1670 1665316 - 1665304 - g 80 -4.7 -5.06414 | opp_overlap 1665306, overlap 1665305 CCGGTGGAAGAAAAA GCGCC AGT GGGGC AGGCTTATGTTGTCC YpsIP31758_1424 1664836 - 1665558 + | hypothetical protein TERM 1671 1666061 - 1666071 + G 80 -6.8 -4.71426 | opp_overlap 1666060 TGTTCGCAACGGAAT TGCC ATC GGCA TTTTGTTCATCGCGA cvpA 1665870 - 1666379 + | colicin V production protein purF 1666392 - 1667909 + | amidophosphoribosyltransferase TERM 1672 1667982 - 1667963 - f 76 -10.8 -2.66692 | overlap 1667962 1667965 TATGACGAGTAGAAG TATGACGG GTAT CCGTCATA AAACAGAATGAGCCA TERM 1673 1668031 - 1668002 - f 77 -6.5 -4.71382 | gap 2, opp_overlap 1668002 AGAATGAGCCAAAAA GGTGCAACCTGCG TTTAGG CGC-GG-TGCACC TTTTTATTCATGGTG TERM 1674 1668002 - 1668031 + F 90 -7.2 -5.15167 | gap 2, opp_overlap 1668002 AGAATGAGCCAAAAA GGTGCAACCTGCGT TTAG GCGC-GGT-GCACC TTTTTATTCATGGTG ubiX 1668171 - 1668743 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 1675 1668886 - 1668915 + F 90 -7.1 -5.18995 | overlap 1668887 TATGCTCCACAATGA TCCTGCAACAGCG ATGG TGCTGTAGTAGGG TTTTTGTATTCTGTT TERM 1676 1668887 - 1668914 + F 73 -8.4 -3.68957 | overlap 1668886 ATGCTCCACAATGAT CCTGCAACAGCG ATGG TGCTGTAGTAGG GTTTTTGTATTCTGT hisJ 1669247 - 1670029 + | histidine ABC transporter, periplasmic histidine-binding protein TERM 1677 1670499 - 1670511 + G 85 -10.5 -4.21922 | opp_overlap 1670499 1670496 TAAAGGGCAAATTGA GGCCG CGA CGGCC TTTGGTTTTACCTCC hisQ 1670125 - 1670811 + | histidine ABC transporter, permease protein HisQ TERM 1678 1671076 - 1671094 + G 80 -3.1 -5.42259 | TGGAGATAATCCGAG GCAATGA TCTGC TCAATGC TTTTTTTCGCAGTGG hisM 1670808 - 1671524 + | histidine ABC transporter, permease protein HisM hisP 1671538 - 1672335 + | histidine/lysine/arginine/ornithine transporter subunit YpsIP31758_1432 1673374 - 1672466 - | NAD dependent epimerase/dehydratase family protein YpsIP31758_1433 1673728 - 1674420 + | cyclic diguanylate phosphodiesterase domain-containing protein TERM 1679 1674652 - 1674662 + G 71 -6.8 -4.15543 | overlap 1674642 TGGTTCGTTACCGGC CACG GAA CGTG TTTTGGCGATCTTTG YpsIP31758_1434 1674608 - 1675159 + | phosphodiesterase YpsIP31758_1435 1675312 - 1675160 - | hypothetical protein YpsIP31758_1436 1675381 - 1675929 + | NUDIX family hydrolase TERM 1680 1675953 - 1675977 + T 90 -5.7 -5.56673 | opp_overlap 1675953 TGCTCAATAAAAAAA CCAAAGCCC CGCTAAA GCGCTTTGG TTTTTTATTATCAGT TERM 1681 1675977 - 1675953 - T 100 -6.4 -5.7946 | opp_overlap 1675953 TGCTCAATAAAAAAA CCAAAGCCCC GCTAA AGCGCTTTGG TTTTTTATTATCAGT TERM 1682 1676015 - 1675998 - T 75 -9.1 -3.62572 | TATTATCAGTTTAAA CCCCCTC CAAG GAGAGGG TGATGGTGACGTCTT YpsIP31758_1437 1677302 - 1676046 - | ascorbate-specific PTS system enzyme IIC YpsIP31758_1438 1677602 - 1677315 - | PTS system, lactose/cellobiose specific IIB subunit YpsIP31758_1439 1677784 - 1677665 - | hypothetical protein cmtB 1678214 - 1677771 - | mannitol-specific cryptic phosphotransferase enzyme IIA component TERM 1683 1678289 - 1678321 + H 77 -8.5 -3.96624 | opp_overlap 1678295, overlap 1678290 1678305 TGTGATCTGGATCTC AATTGATAGCGCTAT CTG GTAGCGCTATCAAAA TTTGTGATAGCGCTA TERM 1684 1678290 - 1678320 + H 86 -12 -2.97653 | opp_overlap 1678295, overlap 1678289 1678305 GTGATCTGGATCTCA ATTGATAGCGCTAT CTG GTAGCGCTATCAAA ATTTGTGATAGCGCT TERM 1685 1678315 - 1678295 - H 70 -9.8 -2.53876 | opp_overlap 1678290 1678289 1678305 CTGGATCTCAATTGA TAGCGCTA TCTGG TAGCGCTA TCAAAATTTGTGATA TERM 1686 1678305 - 1678339 + H 100 -15.2 -3.9712 | opp_overlap 1678295, overlap 1678290 1678289 ATTGATAGCGCTATC TGGTAGCGCTATCAAA ATT TGTGATAGCGCTATCA TTTGTCATGCCATGA TERM 1687 1679256 - 1679237 - g 83 -6.4 -4.93296 | CGAGCATTACAAAAA TGCTGACC AAAC GGTCACCA CGCCTGATGCGGCCA YpsIP31758_1441 1678581 - 1679615 + | LacI family sugar-binding transcriptional regulator TERM 1688 1679645 - 1679625 - T 100 -11.8 -4.50358 | opp_overlap 1679638 ACCTAAAGAGGAAAA CCGCCCCA GAATG CGGGGCGG CTCCCTGTTTTACGT TERM 1689 1679703 - 1679672 - T 79 -10.9 -3.05463 | opp_overlap 1679678, overlap 1679678 ACGTGTCTGATGTAA CAAAAACGCCAGC GCAGAG GCTGGCGTTTCAG ACTGCTGACAAACCC TERM 1690 1679678 - 1679697 + T 84 -10.7 -3.58343 | opp_overlap 1679672 1679678 CTGATGTAACAAAAA CGCCAGC GCAGAG GCTGGCG TTTCAGACTGCTGAC TERM 1691 1679697 - 1679678 - T 100 -10.7 -5.10461 | opp_overlap 1679678, overlap 1679672 CTGATGTAACAAAAA CGCCAGC GCAGAG GCTGGCG TTTCAGACTGCTGAC TERM 1692 1679788 - 1679762 - T 84 -10.1 -3.74872 | gap 1, opp_overlap 1679771, overlap 1679763 1679778 AGGCAGGGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1693 1679789 - 1679763 - T 72 -10.1 -2.84602 | gap 1, opp_overlap 1679771, overlap 1679762 1679778 GGCAGGGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT pta 1682034 - 1679881 - | phosphate acetyltransferase ackA 1683404 - 1682202 - | acetate kinase TERM 1694 1683940 - 1683959 + G 78 -7.8 -4.37534 | opp_overlap 1683939 1683940 GTGTTCCCCGAGAAT CGTGTCAC GGTA GTGACCCG TTTTGGTATCCGTTT YpsIP31758_1444 1683826 - 1684281 + | hypothetical protein YpsIP31758_1445 1684681 - 1685175 + | hypothetical protein YpsIP31758_1446 1685340 - 1685996 + | putative phosphatase TERM 1695 1686060 - 1686076 + F 100 -9.4 -5.42131 | opp_overlap 1686059 ATAAGCCAATAGTAG GGTGCC TCGAC GGCACC TTTTTTGTATCGTTA YpsIP31758_1447 1686288 - 1688120 + | citrate transporter family protein TERM 1696 1688413 - 1688391 - f 74 -5 -4.77442 | opp_overlap 1688393, overlap 1688393 AATAGAATAAATAAA CATGAAATAA TAT TTATTTCATT AGTTTTATTTGATGG TERM 1697 1688411 - 1688393 - f 74 -7.6 -3.97183 | opp_overlap 1688393, overlap 1688391 TAGAATAAATAAACA TGAAATAA TAT TTATTTCA TTAGTTTTATTTGAT TERM 1698 1688393 - 1688411 + F 72 -7.6 -3.89235 | opp_overlap 1688393 1688391 TAGAATAAATAAACA TGAAATAA TAT TTATTTCA TTAGTTTTATTTGAT TERM 1699 1688625 - 1688635 + G 71 -6.8 -4.15222 | ATGTTCATGCGATGA CTGC TGA GCAG TTTCTTGCCGAAAAT YpsIP31758_1448 1688546 - 1688788 + | hypothetical protein TERM 1700 1688832 - 1688805 - T 100 -15.8 -3.4072 | TATCTCTTATCATAA TTTATAGCCTGC ACAA GCAGGCTATAAA GATCAATCCAGTGAA yfbR 1689428 - 1688835 - | hypothetical protein YpsIP31758_1450 1690793 - 1689579 - | aminotransferase AlaT TERM 1701 1689919 - 1689931 + g 79 -10.5 -3.6608 | CTAATGCTCTGATAG CCGCC CAA GGCGG TTTGAATCGCATGCT YpsIP31758_1451 1691162 - 1691046 - | hypothetical protein lrhA 1691650 - 1692579 + | transcriptional regulator LrhA TERM 1702 1692608 - 1692627 + F 100 -7.2 -6.32017 | gap 1, opp_overlap 1692608 AATTCATCATCACAA GCCCCTGTA TTT TA-AGGGGC TTTTTTTTATTTATT YpsIP31758_1453 1692725 - 1692859 + | hypothetical protein TERM 1703 1692918 - 1692894 - f 78 -2.2 -5.52384 | gap 1, overlap 1692896 CCTGGATCAAAAAAA TACTGTCCACT ACTG AGTGGA-AGAA CAGGATATTCCTGAG TERM 1704 1692931 - 1692919 - f 70 -7.7 -3.65522 | TACTGAGTGGAAGAA CAGGA TAT TCCTG AGACAATGGTATAGT TERM 1705 1693075 - 1693096 + F 74 -10.3 -2.57211 | overlap 1693074 ATTAATGTGTAGTTA CTTTTGTCA AAGT TGACAAAAG GTTATCGAAAGGAGT nuoA 1693257 - 1693757 + | NADH dehydrogenase subunit A nuoB 1693859 - 1694542 + | NADH dehydrogenase subunit B TERM 1706 1694782 - 1694792 + G 77 -8.2 -4.30719 | TGTCGAACCGTTTTG GGCC TGA GGCC TTTGTTGTGCAAGCA nuoCD 1694685 - 1696481 + | bifunctional NADH:ubiquinone oxidoreductase subunit C/D TERM 1707 1697173 - 1697163 - g 88 -8.2 -4.7373 | GTATCGCAGCAAAAA CGGC TAT GCCG GGGCAGAAAAAGCGT nuoF 1697044 - 1698429 + | NADH dehydrogenase I subunit F TERM 1708 1700392 - 1700402 + G 71 -8.2 -3.67173 | opp_overlap 1700384, overlap 1700381 TCAATCAGGAAGGCC GCGC ACA GCGC TTCTTCCAGGTTTAT nuoG 1698516 - 1701260 + | NADH dehydrogenase subunit G nuoH 1701257 - 1702234 + | NADH dehydrogenase subunit H nuoI 1702249 - 1702791 + | NADH dehydrogenase subunit I nuoJ 1702804 - 1703349 + | NADH dehydrogenase subunit J nuoK 1703346 - 1703648 + | NADH dehydrogenase subunit K TERM 1709 1704589 - 1704610 + G 70 -8.1 -3.87815 | gap 1 ATTGGCGTACTCCAC CATG-AGCCA GAT TGGCTACATG TTTCTGGCGCTGGGC nuoL 1703645 - 1705489 + | NADH dehydrogenase subunit L TERM 1710 1705737 - 1705749 + G 71 -9.1 -3.61536 | CATATTATAATGTGC CGTGG ATC CCACG TTTCGGCATTAGATT TERM 1711 1706283 - 1706312 + G 75 -7.7 -4.25104 | opp_overlap 1706274, overlap 1706275 1706284 CACACAGCCAGGCAC CTACCGCCGGGTC TGTT GACCTGGCGGGGA TTTTGCTGAAGACCG TERM 1712 1706284 - 1706311 + G 76 -11.2 -3.14848 | opp_overlap 1706274, overlap 1706275 1706283 ACACAGCCAGGCACC TACCGCCGGGTC TGTT GACCTGGCGGGG ATTTTGCTGAAGACC nuoM 1705529 - 1707061 + | NADH dehydrogenase subunit M TERM 1713 1707101 - 1707134 + G 71 -8.9 -3.45849 | CAACTGATCGCAATG CTACCGCTGTTGATC GTCG GATTGACGGTGGTGG TTGTGATGCTGTCCA nuoN 1707068 - 1708531 + | NADH dehydrogenase subunit N TERM 1714 1708573 - 1708610 + F 91 -4.7 -5.67283 | overlap 1708578 TGATGTCGAGATAGA CCCTGCCCCCTGTGAGT TTCG GCTTACAGGGGGTTTTG TTTTTTATTTGGGTT TERM 1715 1708578 - 1708605 + F 100 -14.2 -5.58051 | overlap 1708573 TCGAGATAGACCCTG CCCCCTGTGAGT TTCG GCTTACAGGGGG TTTTGTTTTTTATTT YpsIP31758_1467 1708769 - 1709962 + | hypothetical protein YpsIP31758_1468 1710767 - 1710300 - | hypothetical protein idnK 1711381 - 1710845 - | thermosensitive gluconokinase TERM 1716 1711233 - 1711245 + g 100 -9.1 -5.1615 | overlap 1711231 TGATCGTTCAGTGGC TGGCC GGC GGCCA TTTTTTGGATATTGG idnO 1712194 - 1711430 - | gluconate 5-dehydrogenase TERM 1717 1712307 - 1712333 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 1712296, overlap 1712302 1712308 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1718 1712308 - 1712334 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 1712296, overlap 1712302 1712307 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YpsIP31758_1471 1712791 - 1712678 - | hypothetical protein YpsIP31758_1472 1714237 - 1712954 - | putative lipoprotein TERM 1719 1714570 - 1714551 - H 78 -10.6 -3.36515 | overlap 1714549 TGCCATTGGGAAATA CGGGCGGG CATC CCCTCCCG ACGGTGTAACCGCCG idnR 1714706 - 1715698 + | L-idonate regulatory protein TERM 1720 1715702 - 1715730 + T 73 -5.3 -4.72272 | opp_overlap 1715707, overlap 1715707 GGGACTATCTGAGAC TAAAGGGAAGTCG ATT CGGTTTCCTGTTA TTTTTCATCACCACG TERM 1721 1715707 - 1715725 + T 70 -7.4 -3.84027 | opp_overlap 1715707, overlap 1715702 TATCTGAGACTAAAG GGAAGTCG ATT CGGTTTCC TGTTATTTTTCATCA TERM 1722 1715812 - 1715795 - T 72 -9.9 -2.77899 | TCGGCTCATCAATTA TCACCTG TTAA CAGGTGA CGCCAACGTATAACA YpsIP31758_1474 1715957 - 1715835 - | hypothetical protein TERM 1723 1715928 - 1715945 + g 80 -2.7 -5.44721 | overlap 1715931 CAATGATAAGCTGGT CACGTTA CCGG TAACATG TTTTTTTAACATGGT YpsIP31758_1475 1716162 - 1717112 + | D-isomer specific 2-hydroxyacid dehydrogenase family protein TERM 1724 1717188 - 1717159 - f 76 -10.8 -2.50195 | overlap 1717158 1717156 ATCCATGAGTAATAG CGCGTCAGAAAA TAAAGT TTATCTGACGCG TCAATCGAAAATTAT TERM 1725 1718976 - 1718988 + G 73 -3.3 -4.91109 | CGACGGTGATCGCCA GTCTG GAA CAGCC TTTTTCTGCTCAGGG TERM 1726 1719067 - 1719051 - g 72 -5.7 -4.4078 | GGGCGGTAATGAAAA CCTCGGC AGT GCCACGG GAGCATCAGGTTATT edd 1717691 - 1719562 + | phosphogluconate dehydratase YpsIP31758_1477 1719924 - 1719781 - | hypothetical protein YpsIP31758_1478 1720308 - 1720141 - | hypothetical protein YpsIP31758_1479 1720492 - 1720800 + | hypothetical protein rhiA 1721355 - 1721999 + | protein RhiA TERM 1727 1723754 - 1723720 - g 74 -9.2 -3.6502 | TATTTGTCACTTAAA CGCACTGAATTCAGTG TGG CCCTGCGTTCAGCGCG AGTCGATGGGCAGCA menF 1722532 - 1723899 + | menaquinone-specific isochorismate synthase menD 1724127 - 1725830 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 1728 1726582 - 1726597 + G 74 -4 -4.84359 | gap 1, overlap 1726569 TCCCGGTGCTTTTGC TGCACAG GTG CTG-GCA TTTTTGTCACAGTCA YpsIP31758_1483 1725827 - 1726645 + | acyl-CoA thioester hydrolase YfbB TERM 1729 1727219 - 1727196 - g 76 -2.3 -5.24129 | GTCGGCCAGAAAAAA GCGCGGGAA ATTTGG TTCCTGTGC CGCCAATATGATGCC menB 1726659 - 1727516 + | naphthoate synthase menC 1727516 - 1728487 + | O-succinylbenzoate synthase TERM 1730 1729631 - 1729643 + G 73 -3.3 -4.93661 | TATTGCAGTATTCAG GGGTG CAG CACGC TTTTGTTATTCCTGT menE 1728475 - 1729890 + | O-succinylbenzoic acid--CoA ligase YpsIP31758_1487 1729956 - 1730915 + | hypothetical protein TERM 1731 1730963 - 1730941 - f 100 -9.1 -4.93296 | TCACCACCAGAAAAA GCCCATCAG ATGAA CGGATGGGC TGAGGTTATTGACAA TERM 1732 1731131 - 1731153 + F 100 -9.1 -4.78848 | TTGTCAGCAGTCTGA GCCCATCAG ATGAA CGGATGGGC TTTTGTATTTCCAGG YpsIP31758_1489 1731148 - 1731306 + | hypothetical protein YpsIP31758_1488 1731557 - 1731297 - | hypothetical protein YpsIP31758_1490 1731788 - 1731636 - | hypothetical protein TERM 1733 1731938 - 1731924 - g 91 -4.2 -5.63517 | overlap 1731926 TCCCCAAAGAAAAAA GCGGAT TGC ATCCCC GAAATCGTCATCGCT YpsIP31758_1491 1731845 - 1732855 + | putative SAM-dependent methyltransferase TERM 1734 1733480 - 1733506 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 1733469, overlap 1733475 1733481 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1735 1733481 - 1733507 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 1733469, overlap 1733475 1733480 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1736 1734784 - 1734772 - g 74 -6.3 -4.39989 | overlap 1734783 AGCAAATGACTAAAA CCATT CAG AATGG GGTTACCGCCGCGAT TERM 1737 1734900 - 1734919 + G 70 -2.1 -4.85599 | GTGGGGATGCAAGAT GTGGTGA AATTAA TGACCAC TTTTTCTCAGGTAAA YpsIP31758_1492 1733652 - 1734956 + | methyl-accepting chemotaxis transducer/sensory box protein TERM 1738 1735105 - 1735077 - T 100 -8.8 -5.26918 | opp_overlap 1735072 1735077 ATAGCCTATAAAAAA CTGGCGGGTATC AGTAA GATGTCCGCCAG TGTGATTTCTAGCCA TERM 1739 1735077 - 1735105 + T 95 -13.2 -3.05997 | opp_overlap 1735077, overlap 1735072 ATAGCCTATAAAAAA CTGGCGGGTATC AGTAA GATGTCCGCCAG TGTGATTTCTAGCCA glnQ 1735906 - 1735184 - | glutamine ABC transporter ATP-binding protein TERM 1740 1735584 - 1735594 + g 77 -6.8 -4.63218 | overlap 1735583 GCCTCTTCCTTGGAT GTGC CAC GCAC TTTTGTTGGGCCAAA glnP 1736559 - 1735903 - | glutamine ABC transporter permease protein glnH 1737337 - 1736594 - | glutamine ABC transporter periplasmic protein YpsIP31758_1496 1739034 - 1737907 - | hypothetical protein TERM 1741 1738409 - 1738439 + g 84 -13.4 -2.6583 | opp_overlap 1738406, overlap 1738406 1738405 1738414 GGATTTAACGCATAG CCCAAGGTGACAAT CGC ATTTTCGCCTTGGG TCGCTTTCAACTGTG TERM 1742 1739319 - 1739303 - R 76 -10.8 -2.71364 | opp_overlap 1739303 GGAGGGCGGCAAGCA GGGCCG GTTAA CGGCCC TGTTCAGCGTAATAG TERM 1743 1739303 - 1739319 + r 79 -10.8 -3.04792 | opp_overlap 1739303 GGAGGGCGGCAAGCA GGGCCG GTTAA CGGCCC TGTTCAGCGTAATAG YpsIP31758_1497 1739857 - 1739354 - | DNA starvation/stationary phase protection protein Dps tam 1740890 - 1740114 - | trans-aconitate 2-methyltransferase TERM 1744 1740272 - 1740262 - G 71 -8.2 -3.65991 | overlap 1740263 AGGGGGGCAAGATAA GGGC GTA GCCC CGTTGCCCGCAGCCA YpsIP31758_1499 1741410 - 1740913 - | acetyltransferase YpsIP31758_1500 1742313 - 1741426 - | threonine and homoserine efflux system TERM 1745 1741673 - 1741662 - G 75 -5.8 -4.57755 | ATGCAGTAGACAAAA TGGC GACG GCCA GTGCAATGGGCAAGA TERM 1746 1742010 - 1742027 + g 77 -6.9 -4.57837 | ATTCCAGTGCTACAG CGATGCC TAAT GGCACCG TTTTTAACGACATGT ompX 1742718 - 1743242 + | outer membrane protein X TERM 1747 1743303 - 1743318 + F 100 -9 -5.82316 | opp_overlap 1743302 1743303 TGTGTCTGATAAAAG TCCGCT TTCG AGCGGA TTTTTTTTGCCTGCT TERM 1748 1744322 - 1744336 + G 71 -4.9 -4.55697 | overlap 1744316 CTCGCATTATGCCAC CCGCG CTGGC CGTGG TTTATTTATCGAGAT YpsIP31758_1502 1743558 - 1744496 + | cation diffusion facilitator family transporter TERM 1749 1744483 - 1744514 + F 89 -6.6 -5.38321 | CCTTTACGCGTGATG CCAAGTGGTTGTAG CTGG CCATAGCCATTTGG TTTTTTATCGTGTTT TERM 1750 1744537 - 1744560 + F 100 -11 -4.81685 | TCGTGTTTTTATCAT CCCCCAGC CGTGATTT GCTGGGGG TTTTTAATGGTTACT YpsIP31758_1503 1744734 - 1745306 + | hypothetical protein YpsIP31758_1504 1745456 - 1745325 - | hypothetical protein YpsIP31758_1505 1745493 - 1746155 + | hypothetical protein TERM 1751 1746450 - 1746460 + F 86 -6.8 -4.98672 | overlap 1746457 TTTTTTATTTCTCAC CGTC ACC GACG TTTTGTCTTTTTGAA TERM 1752 1746939 - 1746929 - g 73 -5.4 -4.56597 | overlap 1746932 TGGTTTGTTCAAAAA TGAC AAC GTCA ACATTGCATCCATAC YpsIP31758_1506 1746825 - 1748051 + | oxidoreductase, zinc-binding dehydrogenase family protein rbsB2 1748226 - 1749143 + | ribose ABC transporter, periplasmic ribose-binding protein rbsA2 1749200 - 1750690 + | ribose ABC transporter, ATP-binding protein rbsC2 1750687 - 1751679 + | ribose ABC transporter, permease protein YpsIP31758_1510 1752833 - 1751829 - | LacI family sugar-binding transcriptional regulator TERM 1753 1753073 - 1753083 + r 73 -5.4 -4.70659 | overlap 1753067 GCCGGCTTACTCGGA TCAC TGG GTGA TTTTTACCTCTCAAG TERM 1754 1753093 - 1753107 + r 74 -4.2 -5.08088 | GGGTGATTTTTACCT CTCAAG CGT CCTGAG TTTTTATTCCACGTT YpsIP31758_1511 1754146 - 1753205 - | LysR family substrate binding transcriptional regulator YpsIP31758_1512 1754249 - 1755334 + | tartrate dehydrogenase TERM 1755 1755459 - 1755433 - g 82 -10.1 -3.82218 | gap 1, opp_overlap 1755442, overlap 1755434 1755449 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1756 1755460 - 1755434 - g 71 -10.1 -2.88849 | gap 1, opp_overlap 1755442, overlap 1755433 1755449 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YpsIP31758_1513 1755403 - 1755585 + | hypothetical protein TERM 1757 1755566 - 1755600 + F 78 -10 -3.45031 | overlap 1755563 1755568 CTGCGTTGGCGGGTT TGGGTATGCGTCCGTT TTA ATCGGACGAATGCCTA TTAACTTTTTGAGAA TERM 1758 1755568 - 1755598 + F 78 -10.4 -3.2916 | overlap 1755566 1755563 GCGTTGGCGGGTTTG GGTATGCGTCCGTT TTA ATCGGACGAATGCC TATTAACTTTTTGAG YpsIP31758_1514 1755594 - 1755764 + | hypothetical protein TERM 1759 1756344 - 1756334 - g 71 -4.6 -4.57837 | ATATTGCGCCAAAAA CGCC GAA GGCA CTGGAATACAGCGTC TERM 1760 1757379 - 1757399 + G 83 -2.4 -5.57396 | overlap 1757383 TACCATGAAAACGAC GGTTGTGC TCACT GCGCTGCC TTTTTTATTGATTCT YpsIP31758_1515 1755964 - 1757610 + | putative transporter YpsIP31758_1516 1757727 - 1758851 + | Rieske (2Fe-2S) domain-containing protein TERM 1761 1758860 - 1758884 + F 91 -12.1 -3.54951 | AGAATAGCCGATTAT GGCCCGCAGTG AGC CGCTGTGGGTC TTCTCTGATAGCGTA TERM 1762 1759167 - 1759143 - g 100 -16.5 -3.53091 | ATTCTCCTTTTGAAA CGCACCGCTAC CAA ATAGCGGTGCG CCTGAGTGAGCATTC TERM 1763 1759570 - 1759555 - g 79 -10.4 -3.69395 | GGTATCATTGAATAA CGCCGT TAAA ACGGCG GCAACACAACGCGGT YpsIP31758_1517 1758944 - 1759909 + | oxidoreductase YpsIP31758_1518 1760564 - 1762252 + | ShlB/FhaC/HecB family haemolysin secretion/activation protein TERM 1764 1763237 - 1763223 - g 74 -9.2 -3.69092 | AACATTAACGCCAAA GCCGCC GAT GGCAGC CCGCGGCCAACCGTG TERM 1765 1767395 - 1767380 - g 71 -4.6 -4.59773 | TCTGACCGGTAAAAA CGTCAG TATT CTGGCG GCGGAGAATCAGCTT TERM 1766 1767922 - 1767880 - g 85 -4.7 -5.47431 | gap 1, opp_overlap 1767893 CTAACACACAAAAAA CCGACGGCAGCAACAGCAGC AGTG GCGGCAGT-GTTGGCGTCAG TCTGGGTGTCAGTGG YpsIP31758_1519 1762407 - 1770173 + | hemagglutinin/adhesin repeat-containing protein TERM 1767 1770227 - 1770211 - g 83 -9.4 -4.3129 | opp_overlap 1770215 CACTGATTATGAAAA CGACCC TGAAT GGGTCG TTAAGGATTACTTTA YpsIP31758_1520 1770173 - 1770523 + | hypothetical protein TERM 1768 1770977 - 1770935 - g 85 -4.7 -5.47431 | gap 1, opp_overlap 1770948 CCAACACACAAAAAA CCGACGGCAGCAACAGCAGC AGTG GCGGCAGT-GTTGGCGTCAG TCTGGGTGTCAGTGG YpsIP31758_1521 1770610 - 1771803 + | hypothetical protein YpsIP31758_1522 1772076 - 1772606 + | hypothetical protein YpsIP31758_1523 1772618 - 1772743 + | hypothetical protein YpsIP31758_1524 1773950 - 1772871 - | carbohydrate ABC transporter ATP-binding protein TERM 1769 1773977 - 1774010 + r 100 -14.7 -4.93177 | overlap 1773981 ACAATATGCTGCTAT TTACCCTCGCGTTCA ATAA TGAACGCGAGGTTGA TTTTATTAGTTTTTA TERM 1770 1773981 - 1774006 + r 100 -17.7 -3.84772 | overlap 1773977 TATGCTGCTATTTAC CCTCGCGTTCA ATAA TGAACGCGAGG TTGATTTTATTAGTT manB2 1775438 - 1774050 - | phosphomannomutase YpsIP31758_1526 1776495 - 1775455 - | LacI family transcription regulator TERM 1771 1776680 - 1776654 - H 70 -3.7 -4.79451 | opp_overlap 1776659 1776660 1776662, overlap 1776655 1776662 ACGTTAAACATAAAA TGATGAGATGT GAAAT ACTTCACATCA TTATCGAAATTACGC YpsIP31758_1527 1776767 - 1778053 + | carbohydrate ABC transporter periplasmic-binding protein TERM 1772 1778222 - 1778250 + G 70 -2.5 -4.90778 | gap 1, opp_overlap 1778229, overlap 1778229 GCGGCCTCTTATCTG GGAT-ATACCAG CATATT CTGGTTTTATCC TTTTATTTGGCTCGC TERM 1773 1778229 - 1778242 + G 71 -3.8 -4.71401 | opp_overlap 1778229, overlap 1778222 CTTATCTGGGATATA CCAG CATATT CTGG TTTTATCCTTTTATT YpsIP31758_1528 1778162 - 1779037 + | carbohydrate ABC transporter permease YpsIP31758_1529 1779038 - 1779862 + | carbohydrate ABC transporter permease TERM 1774 1779981 - 1779960 - f 83 -8.7 -4.16943 | opp_overlap 1779960 1779959 TTTGATACTCGAAAA CGCGGTGAA ATGA CTCACCACG ATATTGCTATTTATA YpsIP31758_1530 1780009 - 1781064 + | hypothetical protein YpsIP31758_1531 1781091 - 1782029 + | hypothetical protein TERM 1775 1782092 - 1782077 - f 76 -2.6 -5.38047 | overlap 1782078 1782085 GATTTATAGAAAAAA CCTAAT ATCA ATTAGA TTGGGTGGAGTTCCC TERM 1776 1782508 - 1782519 + G 75 -3.6 -5.14563 | TTTTGGCGATACGGG CTGG AATA CCGG TTTTTTACTCAAGCA TERM 1777 1782705 - 1782691 - g 91 -4.2 -5.52986 | overlap 1782692 AGGCTACGAAAAAAA CCGC ACGACAG GCGG CGATAACAATATTGG TERM 1778 1782891 - 1782874 - g 71 -8.5 -3.75332 | opp_overlap 1782877 ACTTGTTAATGTAAA TTATCGG GTCG CCGATAA TGTGCACGCCGGTCT YpsIP31758_1532 1782152 - 1783267 + | hypothetical protein TERM 1779 1783514 - 1783531 + G 79 -3.3 -5.252 | overlap 1783515 TATCCGCCATTGATG ATGTCGC CCGC GCGGCAA TTTTTTATCAACGTC TERM 1780 1783707 - 1783685 - g 75 -6.2 -4.59207 | opp_overlap 1783689 ATAAAGAGTATAAAA CCAGTGTGGC GGA GCCAAATTGG TGGACATGGCGTGCA YpsIP31758_1533 1783306 - 1784580 + | hypothetical protein TERM 1781 1784610 - 1784645 + T 86 -12 -3.14132 | opp_overlap 1784603 TGTAAATAGTAGCCC CGGTGCTCTGAATTAT TTTT ATATTTCAGAGCACCA TTAGTACACCAGCCA YpsIP31758_1534 1786383 - 1785139 - | small conductance mechanosensitive ion channel (MscS) family protein cas1 1788553 - 1789533 + | CRISPR-associated protein Cas1 TERM 1782 1791483 - 1791495 + G 71 -9.1 -3.4934 | overlap 1791479 CAAGCCTGCGGGCAA CCGGA TAC TCCGG TTAATGTTTGCTGTG TERM 1783 1792362 - 1792350 - g 75 -7.7 -4.20454 | opp_overlap 1792350 1792349 CAAGAAAGAACCAAA CTCGA ACC TCGAG ATAATTTTGTTGATT YpsIP31758_1536 1789530 - 1792817 + | CRISPR-associated helicase Cas3 TERM 1784 1793231 - 1793257 + G 71 -9.4 -3.59979 | opp_overlap 1793224 1793233 1793250 GCATTGAAGTTCACA CACAGTGATGCC AAA GGCAGCAGTGTG TTTAACCTGCCAGCG YpsIP31758_1537 1792973 - 1794319 + | CRISPR-associated protein, Csy1 family YpsIP31758_1538 1794316 - 1795266 + | CRISPR-associated protein, Csy2 family TERM 1785 1795432 - 1795416 - g 80 -4.3 -5.34309 | overlap 1795417 1795418 ATCATTAAAGAAAAA GCGGTGC GGG GCACCAT CTCCAACCGGTTGAA TERM 1786 1795878 - 1795892 + G 75 -5.7 -4.62872 | GAACAAGGTTTAGCG GGCAA CGGTT TTGCC TTTTTCACCGTTGAT YpsIP31758_1539 1795284 - 1796288 + | CRISPR-associated protein, Csy3 family YpsIP31758_1540 1796299 - 1796853 + | CRISPR-associated protein, Csy4 family TERM 1787 1796860 - 1796901 + T 71 -9.7 -2.71731 | gap 1 TGGTTTTGATTCTTT TTGGCCAGTGTTAACGTA TTGATTT TATGTTG-CACTGGCCAA TAGTTAAAGAATCAC TERM 1788 1796957 - 1796947 - T 75 -8.2 -3.90762 | TATGGGGCAAAAATA CCGC TTG GCGG GCGAGCTTCCCGCGC YpsIP31758_1541 1797950 - 1796931 - | aldo/keto reductase family oxidoreductase YpsIP31758_1542 1798464 - 1797961 - | hypothetical protein TERM 1789 1798335 - 1798325 - G 83 -8.2 -4.51699 | overlap 1798327 ATAACGACGATAAAA GGGC AAT GCCC CTGACTGGGAGAGGC YpsIP31758_1543 1799869 - 1798511 - | major facilitator transporter TERM 1790 1799695 - 1799722 + g 85 -11.4 -3.78409 | opp_overlap 1799690 ATCCGAGTAATCCCT CCCATAATGGTG TAAG TGCCATTATGGG TTTGAGTTGAATTAA TERM 1791 1799821 - 1799844 + g 80 -4.6 -5.06451 | gap 1 TTATATGGAAGCGAT TTAGGG-GGAC ATC GTCCATCCTGA TTTTTTCCGATGGTA YpsIP31758_1545 1800317 - 1801243 + | LysR family substrate binding transcriptional regulator YpsIP31758_1544 1801393 - 1801226 - | hypothetical protein TERM 1792 1801383 - 1801356 - G 86 -12.1 -3.47227 | opp_overlap 1801351 GGGTAAGCATCACAA CCATCTGGATG TAAATG CACCCAGATGG CGGAGTTCATAGAGC TERM 1793 1801628 - 1801645 + H 85 -4.2 -5.52909 | TGTCAATAATTTGAA TGTGAT GCAGTG ATCACA TTTTTTTACATCTTG TERM 1794 1802276 - 1802264 - g 87 -6.3 -5.0095 | AAAAAGAGAATAAAA GAGAA ATT TTCTC TCCTCGGGAAAATGA YpsIP31758_1547 1801729 - 1802466 + | LuxR family transcriptional regulator ypsI 1803103 - 1802459 - | N-acylhomoserine lactone synthase YpsI TERM 1795 1803552 - 1803569 + G 72 -5.7 -4.34866 | GACCGCAGTCCTTCT CTTTTTA CGAG TAAAAAG TTTGTCTTCTTCGGT YpsIP31758_1548 1803534 - 1804460 + | integral membrane protein TERM 1796 1804490 - 1804456 - T 72 -10.1 -2.76466 | gap 1, opp_overlap 1804462 1804464, overlap 1804464 1804467 ATAAAATTAAATCGA CGTA-GAGAGAACTGC TCGA GCAGCTCTCTCATTCG GATTAAGTGACAAAA TERM 1797 1804583 - 1804555 - T 73 -8.3 -3.68366 | gap 1, overlap 1804551 GCAGTTTAAAACTAA TTCACTGAC-CG TGAAAT CGCGTCAGTGAA TAAAAAGATTACGCC YpsIP31758_1549 1806319 - 1804592 - | potassium/proton antiporter TERM 1798 1804709 - 1804699 - G 71 -8.2 -3.71848 | TTTGGTCACCAATAA CGGG TTC CCCG CCAAAGAGGTATAAA TERM 1799 1805188 - 1805168 - G 71 -8.3 -3.72576 | overlap 1805171 TTTGCGGGCAGCAAA TGACAGGGT GGT ACCCTGTAA AAGTAGTGATACCAG YpsIP31758_1550 1806908 - 1806663 - | hypothetical protein TERM 1800 1806966 - 1806946 - H 79 -6.9 -4.67692 | opp_overlap 1806946, overlap 1806962 TGAAAATGAAACAAA TCCTGATAA AAC TTAACAGGA TAGTTGTCCTGAAAA TERM 1801 1807349 - 1807338 - H 100 -5.8 -5.9873 | TGAGGATAAAAAAAA CGGT AAGC ACCG AGAATAAAGAAAGGT TERM 1802 1808834 - 1808823 - g 89 -5.8 -5.25803 | AAGGCTGATAAAAAA GACG AAAT CGTC AGTATGCTCGGTGCC mdoG 1808388 - 1809923 + | glucan biosynthesis protein G mdoH 1809961 - 1812525 + | glucosyltransferase MdoH TERM 1803 1812555 - 1812580 + F 74 -6.1 -4.55491 | gap 1, overlap 1812550 AGCAGGTTATAAAAA CGGGTGA-GCGC GTG GCGTATTGCCCG TTTTATCATTAAATC YpsIP31758_1554 1812558 - 1812890 + | hypothetical protein TERM 1804 1812940 - 1812956 + T 100 -9.4 -5.03314 | TGTCAGTAATCTGAA CCAGCC ACAAG GGCTGG TTTTTTACAGATAAC YpsIP31758_1555 1814607 - 1813069 - | proton dependent peptide transporter TERM 1805 1813262 - 1813229 - G 70 -8.1 -3.95584 | gap 1, overlap 1813214 1813230 TGGCCACCAATCAAA CCTGCGGCCAGGTTGC CAA GCGAACTGGC-GCAGA ACCAAAGCCCCATCA TERM 1806 1814805 - 1814837 + r 71 -6.6 -4.23529 | gap 1, opp_overlap 1814815 TATATCTTATTTTGA GATAAAAAGT-CGAT ATTC ATCGCATTTTTTATC TTTATATCTTAGTGT htrB1 1816266 - 1815346 - | lipid A biosynthesis lauroyl acyltransferase YpsIP31758_1557 1816962 - 1816849 - | hypothetical protein YpsIP31758_1558 1816968 - 1817372 + | hypothetical protein YpsIP31758_1559 1817559 - 1817687 + | hypothetical protein YpsIP31758_1560 1817731 - 1818798 + | hypothetical protein YpsIP31758_1561 1818947 - 1820005 + | putative transport protein TERM 1807 1820064 - 1820025 - T 100 -11.4 -4.37092 | overlap 1820026 ACGGTGGTTAGAAAA CCCTCAGGGCCACTGG TTAATTGG CCTACGGCCCTGAGGA ACCGAAAATGGGGTA TERM 1808 1820063 - 1820026 - T 93 -12.7 -3.21934 | overlap 1820025 CGGTGGTTAGAAAAC CCTCAGGGCCACTGG TTAATTGG CCTACGGCCCTGAGG AACCGAAAATGGGGT YpsIP31758_1562 1820233 - 1820120 - | hypothetical protein YpsIP31758_1563 1821161 - 1820577 - | LuxR family transcriptional regulator solA 1822543 - 1821428 - | N-methyltryptophan oxidase TERM 1809 1822753 - 1822728 - R 95 -7.7 -5.06816 | gap 1, opp_overlap 1822726 1822728 AGTGGTTAATAAAAA GACACCAGATAA TAT TTA-CTGGTGCC TGTTTATGGGTAATA YpsIP31758_1565 1823048 - 1822794 - | biofilm formation regulatory protein BssS TERM 1810 1823101 - 1823122 + r 75 -7.3 -4.371 | TAACGAGGATCAATG CGGCTCATT ACCG AGTGAGCTG TTTTAGTATACTCAA TERM 1811 1823301 - 1823279 - R 84 -5.4 -5.26875 | overlap 1823257 1823280 GTTTTAAGCAAAAAA GGCTGAGGAG CGA CTCCCCGGCA AAATGGTATTGTGGT TERM 1812 1823300 - 1823280 - R 78 -8.9 -3.75402 | overlap 1823257 1823279 TTTTAAGCAAAAAAG GCTGAGGAG CGA CTCCCCGGC AAAATGGTATTGTGG dinI 1823799 - 1823554 - | DNA damage-inducible protein I pyrC 1825158 - 1824112 - | dihydroorotase YpsIP31758_1568 1825393 - 1825680 + | antibiotic biosynthesis monooxygenase domain-containing protein TERM 1813 1825867 - 1825822 - T 100 -15 -4.62957 | gap 1, overlap 1825827 1825828 1825853 AGAATCAAAGTAAAA TTAA-ACGGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCCATGTCAA CCGCCAGAGAAAGTG TERM 1814 1825861 - 1825827 - T 100 -18.7 -4.29472 | overlap 1825822 1825828 1825853 CAAAGTAAAATTAAA CGGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCCA TGTCAACCGCCAGAG TERM 1815 1825860 - 1825828 - T 100 -20 -3.16056 | overlap 1825827 1825822 1825853 AAAGTAAAATTAAAC GGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCC ATGTCAACCGCCAGA rne 1829588 - 1825938 - | ribonuclease E TERM 1816 1827030 - 1827016 - G 75 -7.8 -4.18018 | opp_overlap 1827015 TCTGGTGAGGCAAAA GCCCCT GCC AGAGGC ATGGCCGATTGTGCC TERM 1817 1828994 - 1828974 - G 76 -11.1 -3.18264 | opp_overlap 1828985 1828986, overlap 1828977 TTCCTGATGGATTAA GAAGGGCGC GGG GCGACCTTC AGCCGCTTTTTTAAT TERM 1818 1828986 - 1829000 + g 74 -2.7 -5.15634 | opp_overlap 1828977 1828974, overlap 1828985 TAAGAAGGGCGCGGG GCGAC CTTCA GCCGC TTTTTTAATCGCATC TERM 1819 1830598 - 1830612 + G 79 -10 -3.83844 | overlap 1830594 CACCGTTTAGACCGT GACACC TCG GGTGTC TTATTGGTTGCTAAA TERM 1820 1830879 - 1830862 - g 71 -9.1 -3.53811 | overlap 1830866 GCCACGCTGGTTAAA GCCAGCC CAGT GACTGGC CGGACGCATCAAATC rluC 1830163 - 1831125 + | 23S rRNA pseudouridylate synthase C TERM 1821 1831193 - 1831171 - Tf 76 -11.2 -2.56836 | opp_overlap 1831171, overlap 1831170 1831169 GATGATCATAAAAGG CGGGGTGCAC AGC ATGCGCCCCG TTTTTATTCGACTGT TERM 1822 1831171 - 1831193 + TF 100 -12.7 -5.09204 | opp_overlap 1831171 1831170 1831169 GATGATCATAAAAGG CGGGGTGCA CAGCA TGCGCCCCG TTTTTATTCGACTGT maf1 1831844 - 1831248 - | Maf-like protein YpsIP31758_1572 1831836 - 1831973 + | hypothetical protein TERM 1823 1832292 - 1832246 - g 75 -11.6 -2.69471 | overlap 1832245 CCATGTTCATACAAC GTATTGTTTCAGCCCGATCGTC AAT GATGAGCAGGCTGAAGCATTAC CGGAAGCGTACGAGC YpsIP31758_1573 1831986 - 1832510 + | hypothetical protein rpmF 1832523 - 1832690 + | 50S ribosomal protein L32 plsX 1832724 - 1833758 + | putative glycerol-3-phosphate acyltransferase PlsX TERM 1824 1834207 - 1834232 + G 74 -9.9 -3.57263 | gap 1, opp_overlap 1834212, overlap 1834211 CCCGTGCATTGGATC CAGAA-GATCGT GGT ACGATCATTCTG TTTGGCGATGGCGCT TERM 1825 1834321 - 1834333 + G 74 -9.1 -3.63627 | overlap 1834313 CTGATGGTCGTTATG GCGAG TTG CTCGC TTTACCGTATCCAGA fabH 1833765 - 1834715 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1826 1835474 - 1835458 - g 77 -10.1 -3.60475 | opp_overlap 1835473 AACGTCGATGTGAAA GCTGAGG TGT CCCCAGC CGCTATCCGTAGCGC fabD 1834753 - 1835682 + | malonyl CoA-acyl carrier protein transacylase TERM 1827 1835816 - 1835836 + G 81 -12.6 -2.75064 | opp_overlap 1835816 1835815, overlap 1835812 GCGACCAGTGAGAAG GGCGCTGA AGCTA TCAGCGCC TACTTGGGTGAGAAC TERM 1828 1835836 - 1835816 - g 81 -12.6 -2.62463 | opp_overlap 1835812 1835816, overlap 1835815 GCGACCAGTGAGAAG GGCGCTGA AGCTA TCAGCGCC TACTTGGGTGAGAAC fabG 1835696 - 1836430 + | 3-ketoacyl-(acyl-carrier-protein) reductase acpP 1836584 - 1836820 + | acyl carrier protein TERM 1829 1836870 - 1836845 - f 86 -11.9 -2.91681 | opp_overlap 1836845 1836846 CTTTAAGTTTAGATA GTTAGGCGGTC ATTC GACCGCCTAAG TTTTTTTTGTCCGAA TERM 1830 1836845 - 1836870 + F 100 -11.9 -5.93809 | opp_overlap 1836845, overlap 1836846 CTTTAAGTTTAGATA GTTAGGCGGTC ATTC GACCGCCTAAG TTTTTTTTGTCCGAA TERM 1831 1836846 - 1836869 + F 100 -15.4 -4.15201 | opp_overlap 1836845, overlap 1836845 TTTAAGTTTAGATAG TTAGGCGGTC ATTC GACCGCCTAA GTTTTTTTTGTCCGA fabF 1836915 - 1838156 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 1832 1838183 - 1838210 + F 78 -10.6 -3.24381 | opp_overlap 1838188 1838190, overlap 1838188 AAGGTTGCTGATGCT AAAAAGGCCCGG TTTT CCGGGTCTTTTA TTAAGTTCATCTTAT TERM 1833 1838205 - 1838188 - f 91 -8.3 -4.62069 | opp_overlap 1838183 1838188, overlap 1838190 TGCTGATGCTAAAAA GGCCCGG TTTT CCGGGTC TTTTATTAAGTTCAT TERM 1834 1838188 - 1838205 + F 100 -10.5 -4.72631 | opp_overlap 1838188 1838190, overlap 1838183 TGCTGATGCTAAAAA GGCCCGG TTTT CCGGGTC TTTTATTAAGTTCAT pabC 1838518 - 1839324 + | 4-amino-4-deoxychorismate lyase YpsIP31758_1582 1839441 - 1840466 + | hypothetical protein tmk 1840456 - 1841094 + | thymidylate kinase TERM 1835 1841546 - 1841567 + G 71 -6.6 -4.20491 | gap 1, overlap 1841548 1841556 CCAACCCGCCAGCTT GCTGGCTAC ACTGC GTAGCC-GC TGTTTTTATTGGTAT TERM 1836 1841556 - 1841569 + G 75 -3.7 -5.17744 | overlap 1841548 1841546 AGCTTGCTGGCTACA CTGCG TAGC CGCTG TTTTTATTGGTATCT holB 1841094 - 1842116 + | DNA polymerase III subunit delta' YpsIP31758_1585 1842131 - 1842940 + | putative metallodependent hydrolase TERM 1837 1843042 - 1843068 + F 73 -7.3 -4.15044 | opp_overlap 1843042 1843045 GTTTCTTTACGTAAA GTACGAAATCC GAGAG GGATTACGTGC TTTCTTGAAAGAAAC TERM 1838 1843155 - 1843140 - f 74 -6.8 -4.32046 | opp_overlap 1843140 TTCGTAAAAATTAAA GGGTGC TTAG ACACCC TTATTCGCAAAGGCA TERM 1839 1843924 - 1843909 - g 70 -7.6 -3.85165 | CATTCCAAATGCAAA TTGGTG AGTA CACCAA CGCAGCGGGTCAGGT ptsG 1843245 - 1844678 + | glucose-specific PTS system IIBC components TERM 1840 1844718 - 1844701 - f 100 -12.7 -4.35116 | opp_overlap 1844701 TAGGGGAGAGCAAAA GGGAGGC GAAA GCCTCCC TTTATTATTTCAAAC TERM 1841 1844701 - 1844718 + F 100 -12.7 -4.56978 | opp_overlap 1844701 TAGGGGAGAGCAAAA GGGAGGC GAAA GCCTCCC TTTATTATTTCAAAC YpsIP31758_1587 1845059 - 1845877 + | shikimate 5-dehydrogenase hinT 1846051 - 1846404 + | purine nucleoside phosphoramidase TERM 1842 1846792 - 1846815 + G 70 -2.4 -4.96501 | gap 1, overlap 1846793 1846796 1846797 AATTAACAATAATTT TA-ATGCGCGC AGT GCGCGTCTCTA TTTATTTTTATAACG TERM 1843 1846797 - 1846809 + G 75 -10.5 -3.34428 | overlap 1846796 1846793 1846792 ACAATAATTTTAATG CGCGC AGT GCGCG TCTCTATTTATTTTT YpsIP31758_1589 1846439 - 1846828 + | putative lipoprotein YpsIP31758_1590 1846869 - 1847444 + | putative lipoprotein TERM 1844 1847501 - 1847475 - g 75 -11.7 -2.72568 | gap 1, opp_overlap 1847475 1847479 1847480, overlap 1847474 1847472 CTTAATAGCAAACAT CAATCCGGCGGT GAAA ACCGCCG-ATTG TCATATTAGCCCGGT TERM 1845 1847475 - 1847501 + G 75 -11.7 -2.73994 | gap 1, opp_overlap 1847475 1847474 1847472, overlap 1847479 1847480 CTTAATAGCAAACAT CAATCCGGCGGT GAAA ACCGCCG-ATTG TCATATTAGCCCGGT TERM 1846 1847479 - 1847498 + G 71 -9.2 -3.52073 | opp_overlap 1847475 1847474 1847472, overlap 1847475 1847480 ATAGCAAACATCAAT CCGGCGGT GAAA ACCGCCGA TTGTCATATTAGCCC TERM 1847 1847480 - 1847497 + G 81 -12.7 -2.70923 | opp_overlap 1847475 1847474 1847472, overlap 1847479 1847475 TAGCAAACATCAATC CGGCGGT GAAA ACCGCCG ATTGTCATATTAGCC TERM 1848 1847617 - 1847597 - g 78 -7.6 -4.37658 | AATCGCCGCACAAAA GTCAGTTG GGGGT CAACCGAC GACGTGAGCGTAAAT TERM 1849 1848260 - 1848272 + G 85 -7.7 -4.68919 | TGGCATGGGCCGCGC CGTTG CGC CAACG TTTTAATTTGTCTTT thiK 1847425 - 1848291 + | thiamine kinase nagZ 1848362 - 1849393 + | beta-hexosaminidase YpsIP31758_1593 1849521 - 1850063 + | hypothetical protein TERM 1850 1850729 - 1850717 - g 81 -7.7 -4.6313 | opp_overlap 1850716 GTGAAAACAAAACAA TCAGC CTG GCTGA GATTTGTGATGAACA ndh 1850437 - 1851741 + | NADH dehydrogenase TERM 1851 1851991 - 1851970 - f 95 -13.1 -3.15663 | overlap 1851954 ACTCATCGGGATTAA TGAGCCTCA TTCG TGAGGCTCA CCCTGCGGGCTAGCA TERM 1852 1852075 - 1852088 + F 70 -3.7 -4.84311 | overlap 1852076 GACGTTGGGGGGCCT GGCGC TACG GCGCA TTTTCTTATGTGCAC YpsIP31758_1595 1852267 - 1852971 + | hypothetical protein YpsIP31758_1596 1852979 - 1853392 + | hypothetical protein TERM 1853 1853574 - 1853556 - f 70 -7.3 -3.85698 | CCCTGTGTTTACAAA CGGCGAG TCACG CACGCCG TATCCCGGTATTTTA TERM 1854 1854231 - 1854212 - g 71 -2.8 -4.87665 | CCCCATTGATAAAAA TGGTCAAC TGGT GCTGAACA ACCGAGCGTAATACC YpsIP31758_1597 1853703 - 1854242 + | hypothetical protein mfd 1857927 - 1854481 - | transcription-repair coupling factor TERM 1855 1855952 - 1855974 + g 74 -6.3 -4.34486 | gap 1, overlap 1855951 1855948 TGTTGAGCCAGCAGG GTGGTGG-GT ACCA ACACCGCCAC TTGTTTATTATTGGT YpsIP31758_1599 1858164 - 1858045 - | hypothetical protein TERM 1856 1858252 - 1858268 + G 100 -10.1 -4.5123 | TGCGTGGGCGTGCTT CTGACCG CTT CGGTCGG TTTGTTTCGTGGCTT TERM 1857 1858671 - 1858687 + G 79 -10.1 -3.78775 | opp_overlap 1858671 CAGCTCGGGGTTAAA CGCGGTG AAA CACTGCG TTTGATGGTACCGAG lolC 1858197 - 1859399 + | outer membrane-specific lipoprotein transporter subunit LolC lolD 1859392 - 1860096 + | lipoprotein transporter ATP-binding subunit lolE 1860096 - 1861343 + | outer membrane-specific lipoprotein transporter subunit LolE TERM 1858 1861604 - 1861630 + G 74 -10.9 -2.85069 | opp_overlap 1861602, overlap 1861601 1861599 TACTGCGAATGTACC GTCTGCGATGG GGCAA CCATTGCAGGC TGATCTTTCCCGCTT TERM 1859 1861729 - 1861761 + G 70 -9.8 -3.2327 | opp_overlap 1861732, overlap 1861726 1861732 1861749 AGTTTCGCACTTACC CAACGGTGCTGGGG CTTAT TCTCGGCACCGGTG TTGGTGGTGGGTTAA nagK 1861362 - 1862276 + | N-acetyl-D-glucosamine kinase TERM 1860 1862288 - 1862274 - f 85 -7.2 -4.83615 | CATTTGGCAGAAAAA TAATCG TCA CGATTA ATAACAAGACAGATA YpsIP31758_1604 1862325 - 1863161 + | NAD-dependent deacetylase TERM 1861 1863904 - 1863894 - g 71 -6.8 -4.14739 | CGACTGATGGTAAAA CCCT GTT AGGG GCGGATGATAAAGCG pepT2 1863491 - 1864726 + | peptidase T TERM 1862 1864746 - 1864762 + T 72 -7.2 -3.93262 | opp_overlap 1864740 1864746 AACGATAGAGAGAAA CGCCTC GAAAA GGGGCG TTTGAGTTTATTGAC YpsIP31758_1606 1866080 - 1864959 - | cupin family protein phoQ 1867618 - 1866164 - | sensor protein PhoQ TERM 1863 1866773 - 1866786 + g 73 -8.1 -4.13014 | TAGTGTGGTTTGTAG CACCG CCAG CGGTG TTTTAAGGCTGTGAG phoP 1868295 - 1867624 - | DNA-binding transcriptional regulator PhoP YpsIP31758_1609 1869129 - 1868506 - | hypothetical protein TERM 1864 1868963 - 1868983 + g 74 -6.9 -4.42386 | ATCCCACCCATATTT TTATTGCCA ATA TGGCTATAA TTTTGTCGGTCAAAC purB 1870678 - 1869308 - | adenylosuccinate lyase TERM 1865 1870252 - 1870232 - G 71 -10.4 -2.8082 | overlap 1870231 TATTGAGTCAATAAT CTGCCGCC ATGCG GGCAGCAG GACATCCTGGCGAGC YpsIP31758_1611 1871365 - 1870739 - | hypothetical protein trmU 1872538 - 1871423 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1866 1872104 - 1872120 + g 71 -6.5 -4.13945 | opp_overlap 1872103 TTTATTTCCATCAAG GCCGC GCAGTAG GCGGC TTTTACCATCAACAT TERM 1867 1872488 - 1872514 + g 79 -3.5 -5.30686 | opp_overlap 1872485, overlap 1872490 GGAAACGGAAGAGTC GACACCGCCGG ACATG CCGACGATGAC TTTTTTCTGGCTATT YpsIP31758_1613 1873171 - 1872725 - | NUDIX family hydrolase TERM 1868 1873067 - 1873084 + g 71 -2.6 -5.00339 | overlap 1873068 GGCTTCCAGATGACC GGCTGG CTGGTT CCAGCG TTTTTCATTGTTGAT rluE 1873790 - 1873164 - | ribosomal large subunit pseudouridine synthase E TERM 1869 1873718 - 1873700 - G 74 -9.5 -3.57389 | overlap 1873698 TATTGAATAACAATA CCCGCCG TGGCG CAGCGGG GGGGGACTGCCTGGC TERM 1870 1873847 - 1873825 - H 83 -12 -2.80113 | GATTAGCGCATTATA CCCCAATCCG TTT CGGATTGGCG CGGAACGAATATTCA icd 1873921 - 1875174 + | isocitrate dehydrogenase TERM 1871 1875186 - 1875227 + T 100 -14.7 -3.54 | opp_overlap 1875193, overlap 1875187 1875189 1875193 GTAATTCTGATGCAT CTATAAACTTCACGAGGGC TTAT GCTTTCGTGAAGTTTATAC TATTTATGGCGTGCT TERM 1872 1875187 - 1875226 + T 100 -18.2 -2.71918 | opp_overlap 1875193, overlap 1875186 1875189 1875193 TAATTCTGATGCATC TATAAACTTCACGAGGGC TTAT GCTTTCGTGAAGTTTATA CTATTTATGGCGTGC TERM 1873 1875189 - 1875224 + T 100 -16.4 -2.90065 | opp_overlap 1875193, overlap 1875187 1875186 1875193 ATTCTGATGCATCTA TAAACTTCACGAGGGC TTAT GCTTTCGTGAAGTTTA TACTATTTATGGCGT TERM 1874 1875220 - 1875193 - T 77 -8.4 -3.92869 | opp_overlap 1875193 1875189 1875187 1875186 TGATGCATCTATAAA CTTCACGAGGGC TTAT GCTTTCGTGAAG TTTATACTATTTATG TERM 1875 1875193 - 1875220 + T 100 -12.8 -4.12037 | opp_overlap 1875193, overlap 1875189 1875187 1875186 TGATGCATCTATAAA CTTCACGAGGGC TTAT GCTTTCGTGAAG TTTATACTATTTATG YpsIP31758_1616 1876363 - 1875320 - | LacI family sugar-binding transcriptional regulator TERM 1876 1876089 - 1876079 - G 80 -6.8 -4.72986 | TAGGTTCACTAAAAA GCTG TTC CAGC CAAACTCTCGGGCAG TERM 1877 1876585 - 1876566 - R 79 -7.8 -4.2558 | overlap 1876567 CAGGCGGCAGTAAAA CGCCCTCA ATAT TGAGGGCT GAATGTATTGAGGAA TERM 1878 1876584 - 1876567 - R 84 -11.3 -3.15027 | overlap 1876566 AGGCGGCAGTAAAAC GCCCTCA ATAT TGAGGGC TGAATGTATTGAGGA YpsIP31758_1617 1876883 - 1876623 - | hypothetical protein YpsIP31758_1618 1878583 - 1877003 - | methyl-accepting chemotaxis protein TERM 1879 1878122 - 1878109 - G 71 -3.8 -4.67607 | overlap 1878110 1878111 TTTGGAACAAAGAAA GTGG GGAGAG CCAC CCCGTGCGCACGATC YpsIP31758_1619 1880360 - 1879503 - | NmrA family transcriptional regulator YpsIP31758_1620 1880502 - 1880903 + | putative transcriptional regulator YpsIP31758_1621 1880961 - 1881128 + | hypothetical protein TERM 1880 1882152 - 1882134 - g 81 -8.1 -4.51847 | opp_overlap 1882139, overlap 1882125 AAAGAAGGGACAAAA GTGACCC TCAGT GGGCCAC TGGCGTTATCATCGA appA 1881435 - 1882760 + | phosphoanhydride phosphorylase TERM 1881 1882929 - 1882917 - T 95 -3.3 -5.93809 | overlap 1882918 CTGTCATAAAAAAAA CCGGG TGG CCCAA TAAAAGGCAGGCCAA YpsIP31758_1623 1883279 - 1883076 - | hypothetical protein TERM 1882 1883562 - 1883538 - R 84 -11.5 -3.16564 | GCCTTAGTCTATTAA CTCCCCCAT AGGGTTA ATGGGGGAG TCAGACGCTATGTGG YpsIP31758_1624 1884481 - 1883582 - | hypothetical protein TERM 1883 1883853 - 1883865 + g 71 -4.1 -4.66537 | TGGCTACGGGGGCGC TTGGT GAT ACCGA TTTTATGTTGCAACC YpsIP31758_1625 1885022 - 1884573 - | AsnC family transcriptional regulator TERM 1884 1884735 - 1884724 - G 73 -2.2 -5.03747 | AAACGGCTCAAAAAA CAGT CATC ACCG GTTATTTTGTCACAC YpsIP31758_1626 1885401 - 1885285 - | hypothetical protein YpsIP31758_1627 1886016 - 1885483 - | hypothetical protein TERM 1885 1886154 - 1886174 + r 76 -9.7 -3.37879 | opp_overlap 1886171, overlap 1886172 ACCCTTTATACCCGT CGCCCTTCA AGA TGAAGGGGG TTAGTTGCCCTTGCT YpsIP31758_1628 1887310 - 1886300 - | NAD(P)H quinone oxidoreductase PIG3 family protein TERM 1886 1887447 - 1887435 - R 71 -2 -5.15969 | GTGTAATGGAAAAAA TTCA TAGAG TGAA CGTGCGTAACTATCA TERM 1887 1887531 - 1887513 - R 100 -11 -5.9003 | opp_overlap 1887512 AAAGGAACAAAAAAA GCGCCCAT AGG ATGAGCGC GTAAATTTTGCAAAG lacZ 1890918 - 1887718 - | beta-D-galactosidase TERM 1888 1889194 - 1889176 - G 90 -10.2 -4.42806 | CCAGTCCCAAATAAA CCCGCCCT GTA AGCGCGGG TACTGACGAAATGCC TERM 1889 1891711 - 1891698 - H 100 -9.5 -5.67063 | opp_overlap 1891698 CTGATTATAAAAAAA CCCGC TAAG GCGGG TTTTTTACTGTCTGT TERM 1890 1891698 - 1891711 + H 100 -9.5 -5.25893 | opp_overlap 1891698 CTGATTATAAAAAAA CCCGC TAAG GCGGG TTTTTTACTGTCTGT dsrB 1891886 - 1892077 + | hypothetical protein TERM 1891 1892157 - 1892128 - T 100 -8 -5.252 | gap 2, opp_overlap 1892128 TATTGCGATAAAAAA CCGGAGG--AAGGT TCAT ACCTTATCCTCCGG TTTTTGCTTTTTATC TERM 1892 1892128 - 1892157 + T 95 -8 -5.2197 | gap 2, opp_overlap 1892128 TATTGCGATAAAAAA CCGGAGG--AAGGT TCAT ACCTTATCCTCCGG TTTTTGCTTTTTATC YpsIP31758_1631 1893999 - 1892260 - | methyl-accepting chemotaxis protein TERM 1893 1892985 - 1893014 + g 75 -7.9 -4.1822 | gap 1, overlap 1892986 CATTCTGTTTCACGG TTGCGGTCAGT-TG CTC CATGCTGGCCGCAG TTTGTTCAAGTGAAG TERM 1894 1893648 - 1893661 + g 80 -4.5 -5.055 | GCTGTGACTGAGCTA TGCGG CCTT CTGCA TTTTTTAGGCCTTGC YpsIP31758_1632 1895125 - 1895823 + | Mg2+ transporter TERM 1895 1897270 - 1897251 - g 73 -7.8 -4.11484 | opp_overlap 1897269, overlap 1897252 TCTAATCTGGCAAAA GGGGCCAT CGCG ATGGCCCG GCGTAAAGTCGTGGT TERM 1896 1897269 - 1897252 - g 74 -11.3 -3.06569 | overlap 1897251 CTAATCTGGCAAAAG GGGCCAT CGCG ATGGCCC GGCGTAAAGTCGTGG mgtA 1896228 - 1898927 + | magnesium-translocating P-type ATPase TERM 1897 1898961 - 1899001 + F 71 -9.1 -3.36569 | opp_overlap 1898965 1898967, overlap 1898959 1898963 1898965 AGCCTGGTTGATCTC AAGACACTATTCCGGGG GTGGCTG CCCTGGAATAGTGTGTG TATTTAAAAGATTAG TERM 1898 1898963 - 1898999 + F 86 -11.7 -3.24976 | opp_overlap 1898965 1898967, overlap 1898961 1898959 1898965 CCTGGTTGATCTCAA GACACTATTCCGGGG GTGGCTG CCCTGGAATAGTGTG TGTATTTAAAAGATT TERM 1899 1898997 - 1898965 - f 86 -12.1 -3.05844 | opp_overlap 1898963 1898961 1898959 1898965, overlap 1898967 TGGTTGATCTCAAGA CACTATTCCGGGG GTGGCTG CCCTGGAATAGTG TGTGTATTTAAAAGA TERM 1900 1898965 - 1898997 + F 100 -14.3 -3.18571 | opp_overlap 1898965 1898967, overlap 1898963 1898961 1898959 TGGTTGATCTCAAGA CACTATTCCGGGG GTGGCTG CCCTGGAATAGTG TGTGTATTTAAAAGA TERM 1901 1900053 - 1900077 + F 78 -7.3 -4.45168 | GAAGGATCCCTGGTT TTGAGTGATAA ATT TTGTCATTCAA TTTATGTTTTAAAAC flhD 1900115 - 1900465 + | transcriptional activator FlhD flhC 1900469 - 1901050 + | transcriptional activator FlhC TERM 1902 1901978 - 1901964 - g 80 -8.6 -4.40993 | CAGAAACGACCAAAA TGATGC AAT GCATCA AAGTGACTCTGCTGT motA1 1901255 - 1902142 + | flagellar motor protein MotA TERM 1903 1902716 - 1902694 - g 78 -11.4 -3.00476 | opp_overlap 1902713, overlap 1902699 ATCCTGAATGACATA CCGAATAAAC TCA GTTTATCCGG TCACACCGATGATCT TERM 1904 1903019 - 1902997 - g 74 -2.6 -5.03994 | opp_overlap 1903002, overlap 1902998 CTGGATATAGAAAAA GCAACCGGCT TAA AGCAGATTGA TACTCACGGGACGGT motB1 1902139 - 1903440 + | flagellar motor protein MotB TERM 1905 1903470 - 1903483 + G 74 -3.1 -5.14563 | GCATGGATATTACCG CGTTT TATC AGACG TTTTTTGATGAAGCA TERM 1906 1903975 - 1903955 - g 74 -11.1 -2.7535 | opp_overlap 1903952 1903948, overlap 1903952 GCTGGCAACACATCA CCCGCGTTG CTT CAAGGCGGG ATGCGTATTCGTTTG TERM 1907 1904160 - 1904192 + G 76 -9.2 -3.96148 | opp_overlap 1904160 1904163 TGGAGCCTGAGCAGA TTAGCTTTGTGTCC GCAGG GGACACAGAGCAGA TTTATGCTGAGCAGA TERM 1908 1904189 - 1904163 - g 72 -10.9 -2.66435 | opp_overlap 1904160, overlap 1904160 AGCCTGAGCAGATTA GCTTTGTGTCC GCAGG GGACACAGAGC AGATTTATGCTGAGC TERM 1909 1905293 - 1905329 + G 77 -10.1 -3.55084 | overlap 1905277 1905291 CGCGTGCTGCAAGTT CGCGGTGAATTTCTACC CTT GGTTGAATTGTACCGCG TCTTTGATGTTAAAA cheA 1903451 - 1905604 + | chemotaxis protein CheA TERM 1910 1906224 - 1906214 - g 80 -6.8 -4.70659 | GTTGATATCGAAAAA CTGC TGA GCAG TGAAGAGATGTCGTT cheW 1905767 - 1906264 + | purine-binding chemotaxis protein TERM 1911 1906327 - 1906352 + F 71 -8.4 -3.54382 | gap 1, opp_overlap 1906314 1906326 1906331 AAGGTTTCGACGAAT CCAACACC-GA CAGGA TCAGGTGTTGG TTGATATTTGTTCAG TERM 1912 1906398 - 1906423 + F 100 -16.2 -3.0644 | overlap 1906387 1906405 AGCCGTCTCAACCGC GCAGGAGGGC AGGCCG GCCCTCCTGC TCTTGCGGCTTGCCT TERM 1913 1908665 - 1908690 + G 75 -5.4 -4.70319 | gap 1 TTTCAGCCAGGTTAC GCTAACCCTGC TGCTC GC-GGGTCAGC TTTTAGTTTTGGTAC YpsIP31758_1640 1906884 - 1909748 + | putative integral membrane protein TERM 1914 1910340 - 1910330 - g 77 -6.8 -4.55689 | ACTATTCACAGAAAA GGTG CTA CACC GGCCGATATCTTCCG YpsIP31758_1641 1909817 - 1910518 + | hypothetical protein TERM 1915 1910782 - 1910800 + G 71 -8.9 -3.51158 | GCGTATGAAAGTGGT TACCAGC CTGCT GCTGGTA TTAGTATTATTTGGT TERM 1916 1911159 - 1911131 - g 73 -2.5 -5.03145 | opp_overlap 1911140, overlap 1911132 GAAGGCGCCAAAAAA TTAAAACAGTCCT ACG AGGAATATTTTAG TGCCTTAACCGAACT TERM 1917 1911736 - 1911724 - g 71 -6.9 -4.16251 | overlap 1911715 ACAGAACGCTGAAAA CGCCC GTC AGGCG AGTCAATTAGCATTG tar 1910759 - 1912432 + | methyl-accepting chemotaxis protein YpsIP31758_1643 1912616 - 1914226 + | methyl-accepting chemotaxis protein TERM 1918 1914313 - 1914281 - f 76 -10.7 -2.60808 | overlap 1914277 AGGAGTGACAATCGA TCATCACTCGTAACG GGT CATCACGAGTAACGA CAAGTGGCTGTAAAG TERM 1919 1915123 - 1915147 + G 77 -6.4 -4.51799 | opp_overlap 1915124, overlap 1915124 TCTATTTTGATAAAG AGACGCAGGA ACGCA TTCTGCGTCG TTTTGTACCTTTGCT TERM 1920 1915124 - 1915146 + G 73 -9.9 -3.29995 | opp_overlap 1915124, overlap 1915123 CTATTTTGATAAAGA GACGCAGGA ACGCA TTCTGCGTC GTTTTGTACCTTTGC cheR 1914453 - 1915271 + | chemotaxis methyltransferase CheR TERM 1921 1915763 - 1915742 - g 71 -3.8 -4.68593 | gap 1 CTCAGCAGTGAAAAA TTGATCGCC ATTGG GGC-ATCAA CTGGCGGTACTGAGG cheB 1915271 - 1916320 + | chemotaxis-specific methylesterase cheY 1916421 - 1916810 + | chemotaxis regulatory protein CheY cheZ 1916820 - 1917464 + | chemotaxis regulator CheZ TERM 1922 1917486 - 1917509 + T 100 -14.6 -4.11281 | TATCGATAGCGCTAA CCGGTAGGGA ATTG TCCCTGCCGG TTTATACTTGTCATA YpsIP31758_1648 1917897 - 1917778 - | hypothetical protein YpsIP31758_1649 1918028 - 1918792 + | N-acetylmuramoyl-L-alanine amidase TERM 1923 1919660 - 1919674 + G 79 -11.4 -3.1506 | CGATTTCATCGACCT CCACCG ATG CGGTGG TTGGTAGCCAGCTTT TERM 1924 1920605 - 1920619 + G 75 -11.4 -2.64747 | opp_overlap 1920596, overlap 1920604 1920607 AGATCACCGGTGTGG CAGCCG GTT CGGCTG ATTATGATGCGGTCA YpsIP31758_1650 1919149 - 1921791 + | hemagglutination repeat-containing protein TERM 1925 1921829 - 1921858 + F 84 -10.7 -3.61089 | opp_overlap 1921830, overlap 1921830 GTTTAATAATCATTA ACGGGTTGTGCGA TTTT TTGCACAGCCCGA TTCTACTTCTTAGGG TERM 1926 1921857 - 1921830 - f 76 -9.8 -3.33171 | opp_overlap 1921829 1921830 TTTAATAATCATTAA CGGGTTGTGCGA TTTT TTGCACAGCCCG ATTCTACTTCTTAGG TERM 1927 1921830 - 1921857 + F 95 -14.2 -2.76171 | opp_overlap 1921830, overlap 1921829 TTTAATAATCATTAA CGGGTTGTGCGA TTTT TTGCACAGCCCG ATTCTACTTCTTAGG YpsIP31758_1651 1921891 - 1922844 + | hypothetical protein alr1 1924691 - 1923462 - | alanine racemase YpsIP31758_1653 1925196 - 1925083 - | hypothetical protein YpsIP31758_1654 1925836 - 1926084 + | hypothetical protein TERM 1928 1926224 - 1926250 + F 72 -7.2 -3.9749 | gap 1, overlap 1926223 CATCCCTGGGGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 1929 1927613 - 1927599 - g 79 -11.4 -3.19522 | opp_overlap 1927598 1927597 CCAGTCAAGATGGAA CGCCTG TAT CAGGCG GGTTATGCCGAAGGA YpsIP31758_1656 1926477 - 1927733 + | patatin family phospholipase YpsIP31758_1655 1927830 - 1927711 - | hypothetical protein TERM 1930 1928001 - 1927975 - g 83 -2.2 -5.60993 | opp_overlap 1927975 TCCTCGATAAAAAAA GTGTTCAGCG ATAGCTA CTCGGAACAC TCTTTCGATGAATGG YpsIP31758_1657 1927888 - 1928121 + | hypothetical protein YpsIP31758_1658 1928384 - 1928557 + | hypothetical protein YpsIP31758_1659 1928909 - 1929298 + | hypothetical protein YpsIP31758_1660 1929647 - 1929408 - | hypothetical protein YpsIP31758_1661 1930844 - 1929855 - | spore coat U domain-containing protein YpsIP31758_1662 1930908 - 1931033 + | hypothetical protein YpsIP31758_1663 1933497 - 1931050 - | fimbrial usher protein YpsIP31758_1664 1934319 - 1933567 - | pilus assembly chaperone YpsIP31758_1665 1934934 - 1934350 - | hypothetical protein YpsIP31758_1666 1935419 - 1934928 - | hypothetical protein YpsIP31758_1667 1936018 - 1935464 - | hypothetical protein TERM 1931 1935790 - 1935774 - G 71 -6.5 -4.29304 | opp_overlap 1935779 1935780, overlap 1935770 GCACTACAATACAAA CTGAGAG TCC CGCTCAG TGTGCCACTGAATGC YpsIP31758_1668 1939150 - 1936499 - | mce family protein TERM 1932 1937239 - 1937253 + gr 77 -8.5 -3.98282 | overlap 1937240 TAATCTGGCTACCCA CGGCC CGTGC GGCCG TTTCATTACTATACA TERM 1933 1938671 - 1938690 + gr 72 -10 -2.76671 | opp_overlap 1938671, overlap 1938670 GAGATGAATCATTAA TTCGCCTG TATT CAGGCGGA ATTTAGGCTGAGTAT YpsIP31758_1669 1940366 - 1939119 - | PqiA family integral membrane protein TERM 1934 1940193 - 1940178 - GH 71 -9 -3.39449 | CGGTATTAACAGCAA CATGGC GCAA GCCATG GCGGTCAACCGGGTC TERM 1935 1940507 - 1940526 + H 90 -10.8 -3.91642 | opp_overlap 1940507, overlap 1940517 AACATTACAGAGGAA TACCCTTG TCGC CAAGGGTA TTTAATGATTATTTT TERM 1936 1940526 - 1940507 - H 81 -10.8 -3.34936 | opp_overlap 1940507 1940517 AACATTACAGAGGAA TACCCTTG TCGC CAAGGGTA TTTAATGATTATTTT TERM 1937 1940858 - 1940846 - g 75 -6.2 -4.4891 | CGCAGTAGCAGAAAA CCGC GTTCA GCGG GTAGGTAATGTGCAT YpsIP31758_1670 1940598 - 1941095 + | hypothetical protein TERM 1938 1941123 - 1941142 + F 86 -12.2 -3.1552 | overlap 1941121 GTGGCAATTGCTGAT GGCGTCAT TATA ATGACGCC TGTTCATGCCTGCGC TERM 1939 1941247 - 1941257 + G 80 -8.2 -4.41348 | AGCCTTTTTGGCCGA GCGG TTC CCGC TTTGTTTCACCGCCG TERM 1940 1941369 - 1941348 - g 78 -10.9 -3.29147 | GGGAAGAGAATTTAA GCAAAACGC AATT GCGTTCTGC GCTGCGTCTCTACAC TERM 1941 1941647 - 1941620 - g 74 -2.7 -5.08824 | overlap 1941621 CCGGCAGGTAAAAAA CCTGCA-CCGCGT CGTG AAGCGGGTGC-GG CTCCGGAAAACCGCA proQ 1941191 - 1941904 + | putative solute/DNA competence effector prc 1941924 - 1943996 + | carboxy-terminal protease TERM 1942 1944018 - 1944039 + F 100 -8.7 -5.60993 | opp_overlap 1944018 AAATAATATGAAGAA TCCGGGTCT TATT GGACTCGGA TTTTTTTGTGCCCAG TERM 1943 1944077 - 1944059 - f 100 -16 -4.36914 | opp_overlap 1944059 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1944 1944059 - 1944077 + F 100 -16 -3.07307 | opp_overlap 1944059 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_1673 1944139 - 1944648 + | IS1541, transposase TERM 1945 1944722 - 1944754 + F 100 -11.3 -5.25735 | opp_overlap 1944729, overlap 1944728 1944729 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTTGCTTTTTTCA TERM 1946 1944728 - 1944748 + F 100 -12.5 -4.08353 | opp_overlap 1944729, overlap 1944722 1944729 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTTGCTT TERM 1947 1944747 - 1944729 - f 100 -16 -4.8048 | opp_overlap 1944728 1944722 1944729 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTGCT TERM 1948 1944729 - 1944747 + F 100 -16 -3.02572 | opp_overlap 1944729, overlap 1944728 1944722 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTTGCT YpsIP31758_1674 1945180 - 1946061 + | heat shock protein HtpX TERM 1949 1946139 - 1946167 + F 100 -13.2 -5.44119 | ATAATATGGTCTTCA CACCCTGTGAGC GGTAA GCTGACAGGGTG TTTTTTTACCGTGGC TERM 1950 1946329 - 1946344 + F 100 -4.8 -5.9362 | AAATCTGTGACTTAC TTCATT GAAA AATGAA TTTTTTTGTCTTTTC YpsIP31758_1675 1946719 - 1947261 + | fimbrial protein TERM 1951 1947348 - 1947330 - f 100 -10.3 -4.386 | opp_overlap 1947329 1947328 CAATCCGGCATAAAA TGGGAGC TTAGT GCTCCCA GCTTTATAAGTTCGA YpsIP31758_1676 1947422 - 1948159 + | fimbrial assembly chaperone protein TERM 1952 1948157 - 1948208 + F 72 -10 -2.84999 | opp_overlap 1948157 1948172, overlap 1948172 CAAAAACTGACCCAA TAAAACTATAAAAAATACAAATTA AGGG TAATTTGTATTTTTTGCACTTTTA TATACTGCATTTAAT TERM 1953 1948208 - 1948157 - f 74 -10 -3.14261 | opp_overlap 1948157 1948172, overlap 1948172 CAAAAACTGACCCAA TAAAACTATAAAAAATACAAATTA AGGG TAATTTGTATTTTTTGCACTTTTA TATACTGCATTTAAT TERM 1954 1948193 - 1948172 - f 95 -7.5 -5.4588 | opp_overlap 1948157 1948172, overlap 1948157 TAAAACTATAAAAAA TACAAATTA AGGG TAATTTGTA TTTTTTGCACTTTTA TERM 1955 1948172 - 1948193 + F 90 -7.5 -5.15117 | opp_overlap 1948172 1948157, overlap 1948157 TAAAACTATAAAAAA TACAAATTA AGGG TAATTTGTA TTTTTTGCACTTTTA TERM 1956 1950537 - 1950527 - g 75 -5.4 -4.68994 | opp_overlap 1950530, overlap 1950529 AGTACTAGCCAAAAA GTTG CGC CAAC CGCAGGTGCTGTTGC YpsIP31758_1677 1948241 - 1950853 + | fimbrial usher protein YpsIP31758_1678 1950850 - 1952013 + | fimbrial family protein YpsIP31758_1679 1952010 - 1952813 + | pili assembly chaperone YpsIP31758_1680 1954234 - 1952867 - | major facilitator transporter TERM 1957 1953818 - 1953793 - G 85 -11.3 -3.81691 | overlap 1953813 AAGACACAGCAACAA TCAAGGTATTG ATAC CAATACCTCGA CCAAGTTGGGCTCGA YpsIP31758_1681 1954515 - 1954384 - | hypothetical protein ogl 1954601 - 1955767 + | oligogalacturonide lyase TERM 1958 1955780 - 1955806 + F 100 -12.4 -3.88498 | TAGCCGAGTTTTCCA TTAGCCTCTCTC TTA GAAAGAGGCTAA TTTGCTGTCTGCAAG YpsIP31758_1683 1955954 - 1956745 + | transcriptional regulator TERM 1959 1956868 - 1956848 - f 82 -6.8 -4.82901 | opp_overlap 1956848 CTCTTTTTATAAAAA CAGCTCCT CTGGC AGGGGCTG TTTTTCATCACATGA TERM 1960 1956848 - 1956868 + F 100 -9 -4.7373 | opp_overlap 1956848 CTCTTTTTATAAAAA CAGCTCCT CTGGC AGGGGCTG TTTTTCATCACATGA YpsIP31758_1684 1957131 - 1957982 + | N-acetylmuramoyl-L-alanine amidase YpsIP31758_1685 1959588 - 1958197 - | sodium:dicarboxylate symporter family protein TERM 1961 1958422 - 1958397 - G 71 -10.3 -2.86271 | overlap 1958394 CGGGCAGTACAATTA GGGCGGCGAAG GTTG CACCGCCACCC ACACCGGCAACACCC YpsIP31758_1686 1960340 - 1959792 - | hypothetical protein TERM 1962 1959982 - 1959943 - G 81 -11.2 -3.76641 | opp_overlap 1959940 AGCGGAATACTGAAA CGCCAGCGGCAGGGCCAC AATA GCGGCACACCGGCTGGCG TAATCATATCGGCCA TERM 1963 1960770 - 1960741 - R 100 -13.1 -5.53288 | gap 1, opp_overlap 1960748 1960748 GCTAAGCTAAAAAAA GGGAAAAG-TGACT GGG AGTCAACTTTTCCC CAAAATAATGCAGAG kdgM2 1961548 - 1960838 - | oligogalacturonate-specific porin protein KdgM TERM 1964 1961647 - 1961635 - R 100 -6.3 -5.71983 | opp_overlap 1961635 1961634 1961627 GCAACCACAAAAAAA GAAAC AAT GTTTC ATTTGTTGTTGTCAT TERM 1965 1961819 - 1961782 - R 100 -14.4 -3.74693 | opp_overlap 1961782 1961787, overlap 1961787 TTTTATTTGATTAAA CAAAATAACCCCACCA AATAAA TGGCAGGGTTATTTTG TGACTTAAGTTAAAT TERM 1966 1961782 - 1961819 + r 71 -10 -2.57192 | opp_overlap 1961782 1961787, overlap 1961787 TTTTATTTGATTAAA CAAAATAACCCCACCA AATAAA TGGCAGGGTTATTTTG TGACTTAAGTTAAAT TERM 1967 1961814 - 1961787 - R 100 -8.5 -4.93877 | opp_overlap 1961782 1961787, overlap 1961782 TTTGATTAAACAAAA TAACCCCACCA AATAAA TGGCAGGGTTA TTTTGTGACTTAAGT togB 1963138 - 1961846 - | oligogalacturonide ABC transporter, periplasmic oligogalacturonide-binding protein TERM 1968 1962599 - 1962610 + g 80 -4.4 -5.30616 | opp_overlap 1962591 1962599 TACAACAGGGTAATA TTGG TCAC CCAA TTTTTCTTTAAATAC togA 1964281 - 1963154 - | oligogalacturonide ABC transporter, ATP-binding protein togN 1965215 - 1964295 - | oligogalacturonide ABC tansporter, permease protein togM 1966098 - 1965208 - | oligogalacturonide ABC tansporter, permease protein YpsIP31758_1692 1967806 - 1966139 - | periplasmic pectate lyase TERM 1969 1967940 - 1967956 + r 91 -3.7 -5.83211 | AAAGTGTGATCGAAG TCGGAAC GTT GTTTTGA TTTTTTATTTTGGTG TERM 1970 1968055 - 1968036 - R 100 -12.2 -6.01369 | opp_overlap 1968033 TAAATAATAAAAAAA GGCACAAC CAAA GTTGTGCC TGATGCGTTTTTGAG kduD1 1968912 - 1968151 - | 2-deoxy-D-gluconate 3-dehydrogenase TERM 1971 1968759 - 1968739 - G 71 -4.6 -4.59773 | opp_overlap 1968739 1968747 GGTCAGGCTGAAAAA GCGACGGC CCAGT GCAGTCAC TTGTTCGATAGTCTC TERM 1972 1968972 - 1968988 + r 70 -7.2 -3.77196 | opp_overlap 1968972 TTATTGGAGGTGAAA GCCGCC GTAAA GGTGGC TTTAATAGGTGATAC kduI 1969840 - 1969004 - | 5-keto-4-deoxyuronate isomerase YpsIP31758_1696 1970176 - 1970508 + | cupin domain-containing protein TERM 1973 1970517 - 1970546 + T 93 -10.7 -4.16842 | gap 1, opp_overlap 1970516 1970513, overlap 1970518 TCTCTAAAATATATT CGGCGGCT-GAGTC ACT GACTCTGGCCGCCC TTTATTACCGCTGAC TERM 1974 1970518 - 1970545 + T 100 -14.2 -3.09784 | gap 1, opp_overlap 1970516 1970513, overlap 1970517 CTCTAAAATATATTC GGCGGCT-GAGTC ACT GACTCTGGCCGCC CTTTATTACCGCTGA YpsIP31758_1695 1970621 - 1970505 - | hypothetical protein TERM 1975 1970587 - 1970600 + g 73 -2.3 -5.14563 | overlap 1970588 1970595 1970596 TCCTTTCCACTCCGT ATCGC TATA GCGAC TTTTTTACTAAAAAG YpsIP31758_1697 1971455 - 1970790 - | 2-deoxyglucose-6-phosphatase TERM 1976 1971802 - 1971788 - H 76 -10 -3.36195 | overlap 1971786 1971784 1971799 TAAATAGCAAACATA GCGGTA AAG TACCGC ACAACGTGTGGATGT YpsIP31758_1699 1971866 - 1972420 + | hypothetical protein YpsIP31758_1698 1972520 - 1972404 - | hypothetical protein YpsIP31758_1700 1973424 - 1972549 - | fructosamine kinase family protein YpsIP31758_1701 1973661 - 1973449 - | hypothetical protein yfeD 1974622 - 1973729 - | chelated iron ABC transporter, permease protein YfeD TERM 1977 1974458 - 1974441 - G 75 -5.5 -4.67755 | ATACCGAGCCAAAAA GCCAGAA CAAT CCCTGGC AGCACAGCATGAGAA yfeC 1975503 - 1974619 - | chelated iron ABC transporter, permease protein YfeC yfeB 1976393 - 1975503 - | chelated iron ABC transporter, ATP-binding protein YfeB yfeA 1977325 - 1976390 - | chelated iron ABC transporter, periplasmic iron binding protein YfeA TERM 1978 1977587 - 1977600 + H 82 -6.7 -4.89477 | GAATTCAAAAGTCGG TTGCC TAAT GGCAA TTTTATTGTTGGCGG TERM 1979 1977681 - 1977670 - g 81 -3.6 -5.40072 | GGTGGCTGAAAAAAA CGCC ACAG GGCA ATTCTCTTAACGTAG YpsIP31758_1706 1977594 - 1978232 + | transglycosylase slt family protein YpsIP31758_1707 1979037 - 1978354 - | multiple drug resistance protein MarC YpsIP31758_1708 1979275 - 1979607 + | hypothetical protein YpsIP31758_1709 1979565 - 1979711 + | hypothetical protein TERM 1980 1979727 - 1979700 - f 100 -13.5 -5.19275 | AGCCAGAAAATAAAA CGCCCCGATTG AATAAA CAATCAGGGCG ACGTTCCAGTAACCA YpsIP31758_1710 1980024 - 1980158 + | hypothetical protein YpsIP31758_1711 1980578 - 1980366 - | hypothetical protein TERM 1981 1980436 - 1980418 - G 85 -3 -5.56568 | overlap 1980420 ACACCATCAAAAAAA CGGCCTTT CGA AACGGCAG ACATAAAGTTTTGAT TERM 1982 1982664 - 1982652 - g 79 -3.3 -5.32565 | CAAGTAACCAAAAAA CTGCA AGA TGCGG GTATTAGAGCAAAAG thrS 1980969 - 1982897 + | threonyl-tRNA synthetase infC 1982901 - 1983452 + | translation initiation factor IF-3 rpmI 1983549 - 1983746 + | 50S ribosomal protein L35 rplT 1983784 - 1984140 + | 50S ribosomal protein L20 TERM 1983 1984171 - 1984153 - f 78 -10.3 -3.2496 | opp_overlap 1984153, overlap 1984148 TAAGTCAGAATTGAA GAGGGAG CTTGT CTCCCTC TTTTAATCTTTGCAC TERM 1984 1984153 - 1984171 + F 100 -10.3 -4.49756 | opp_overlap 1984153 1984148 TAAGTCAGAATTGAA GAGGGAG CTTGT CTCCCTC TTTTAATCTTTGCAC TERM 1985 1984330 - 1984347 + F 100 -8.4 -6.04324 | AAAAATAGCGCCGAA GCCTCC CATCGT GGAGGC TTTTTTGTTTTTTAC TERM 1986 1984755 - 1984744 - g 75 -3.6 -5.09895 | overlap 1984745 TATCTAGGTAAAAAA GGCC ACTT GACC CTTCAAATGACATCG TERM 1987 1985497 - 1985513 + G 75 -8 -4.29176 | AATGTCGGTATCGAT CCTGAG ATTTA CTCAGG TTTTGCATTCGGTAT pheS 1984639 - 1985622 + | phenylalanyl-tRNA synthetase subunit alpha pheT 1985636 - 1988023 + | phenylalanyl-tRNA synthetase subunit beta ihfA 1988028 - 1988324 + | integration host factor subunit alpha TERM 1988 1988358 - 1988343 - f 100 -11.8 -4.52589 | opp_overlap 1988343 GTTTCCGACATAAAA GGCCGC GCAA GCGGCC TTTTTCTTTTCAAGA TERM 1989 1988343 - 1988358 + F 100 -11.8 -5.45802 | opp_overlap 1988343 GTTTCCGACATAAAA GGCCGC GCAA GCGGCC TTTTTCTTTTCAAGA YpsIP31758_1719 1988658 - 1989116 + | hypothetical protein TERM 1990 1989133 - 1989177 + F 75 -8.7 -3.63515 | opp_overlap 1989131 1989133 CGAGCATAACAAACA GTTGCTAACTTTACTTGTTTG CTA TGACCAAGCAGAGTTAGCGAC TTATTAGCAATAAAG btuC 1989343 - 1990350 + | vtamin B12-transporter permease btuE 1990420 - 1990974 + | putative glutathione peroxidase btuD 1990999 - 1991757 + | vitamin B12-transporter ATPase arnB 1992107 - 1993261 + | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase TERM 1991 1993490 - 1993508 + F 88 -11 -3.76492 | opp_overlap 1993490 TAATTATGGTCAACA TTCCGCCA TTA TGGCGGGA TTTAATCAGGTTAGC TERM 1992 1993850 - 1993864 + F 71 -10 -2.73124 | overlap 1993820 1993849 AGAGATTACGGTCCA TCACGC CGA GCGTGA ATTTGGCAACTCCAA TERM 1993 1994111 - 1994093 - f 100 -16 -4.36914 | opp_overlap 1994093 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1994 1994093 - 1994111 + F 100 -16 -3.07307 | opp_overlap 1994093 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_1725 1994173 - 1994682 + | IS1541, transposase TERM 1995 1994756 - 1994788 + F 100 -11.3 -3.95022 | opp_overlap 1994763, overlap 1994760 1994762 1994763 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTCATGTTCATCGG TERM 1996 1994760 - 1994784 + F 100 -9.9 -4.56883 | opp_overlap 1994763, overlap 1994756 1994762 1994763 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTCATGTTCA TERM 1997 1994762 - 1994782 + F 100 -12.5 -3.88114 | opp_overlap 1994763, overlap 1994760 1994756 1994763 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTCATGTT TERM 1998 1994781 - 1994763 - f 100 -16 -4.8048 | opp_overlap 1994762 1994760 1994756 1994763 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCATGT TERM 1999 1994763 - 1994781 + F 100 -16 -2.91241 | opp_overlap 1994763, overlap 1994762 1994760 1994756 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTCATGT TERM 2000 1995048 - 1995058 + G 87 -6.8 -5.10767 | overlap 1995050 ATACTGATAATCCTG GCGA GAA TCGC TTTTTCTCTTCGGTC arnA 1994939 - 1996942 + | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase TERM 2001 1997075 - 1997092 + G 80 -6.9 -4.7254 | opp_overlap 1997073, overlap 1997077 GGCCGGATAATATGG GACGCCA TTTA TGGCGCC TTTTTCGTCCGCGCT YpsIP31758_1728 1996939 - 1997844 + | polysaccharide deacetylase TERM 2002 1998040 - 1998030 - g 83 -8.2 -4.59773 | opp_overlap 1998029 1998027 1998030 CGTTATTTTGAAAAA CCGG TCG CCGG GTATTGGTTTAATAA arnT 1997841 - 1999505 + | 4-amino-4-deoxy-L-arabinose transferase TERM 2003 1999575 - 1999623 + G 87 -13.1 -3.34895 | opp_overlap 1999592 GTCAAAAACAGGCTG CGCAGTGTTGGGAGCAACCGCAG GCC CGGCGGTTGAATCTGACATTGCG TTGGTTGGCGATAGC TERM 2004 1999696 - 1999723 + G 85 -9.9 -4.32571 | ATTGCAGCAACTCCC GCTGAGCGTGG CCTATC CTATGCTCAGC TTTAATTTTGTGTTG YpsIP31758_1730 1999502 - 1999846 + | SMR family multidrug efflux pump YpsIP31758_1731 1999843 - 2000229 + | hypothetical protein YpsIP31758_1732 2000509 - 2000973 + | NlpC/P60 family lipoprotein YpsIP31758_1733 2001098 - 2002114 + | lipoate-protein ligase A YpsIP31758_1734 2002178 - 2003629 + | hypothetical protein TERM 2005 2003748 - 2003700 - T 95 -7.8 -5.00616 | gap 1, opp_overlap 2003714, overlap 2003679 2003702 TTTTTTCGGAAAAAA TAGGGATAGA-AAAAGTTAAC CCGACAAC GTTAACTTTTCCCTATCCCGA AGGTATTCATTTAAT TERM 2006 2003746 - 2003702 - T 91 -10.4 -4.13561 | gap 1, opp_overlap 2003714, overlap 2003679 2003700 TTTTCGGAAAAAATA GGGATAGA-AAAAGTTAAC CCGACAAC GTTAACTTTTCCCTATCCC GAAGGTATTCATTTA aroH 2004844 - 2003798 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2007 2004729 - 2004743 + g 74 -10 -3.50393 | TTCTCTATTCGTTTA CGTGAC GCT GTCACG TTATCTGCAATAACC YpsIP31758_1736 2005822 - 2005001 - | hypothetical protein TERM 2008 2007655 - 2007667 + G 71 -4.7 -4.54727 | overlap 2007656 2007663 TGATGAATGTTGGCA ACCCG GAC CGGGC TTTTGATTTCGCCCG ppsA 2006178 - 2008562 + | phosphoenolpyruvate synthase TERM 2009 2008645 - 2008664 + T 100 -10 -5.47399 | overlap 2008658 TATAGGTATTCATCA TCCGCAGC TTAG GTTGCGGA TTTTTTTGCAATTAA TERM 2010 2008818 - 2008799 - T 100 -9.3 -6.21477 | AATAGCAAAAAAAAA GCCTGTC TTAGGT GACAGGC AAAGACTACACACAG TERM 2011 2008988 - 2008978 - T 86 -2.6 -5.7946 | CTCTGAATAAAAAAA TTAT TAA ATAA GAAGTAGAATGAGAT TERM 2012 2009158 - 2009124 - T 100 -13.7 -3.06087 | overlap 2009127 2009152 AATATATGCTGAATA TAAGGGGTTCGGCAG AATAA CCACCAAACCCCTTA GGGTTAAAGCTCTTC TERM 2013 2009155 - 2009127 - T 84 -11 -3.67052 | overlap 2009124 2009152 ATATGCTGAATATAA GGGGTTCGGCAG AATAA CCACCAAACCCC TTAGGGTTAAAGCTC YpsIP31758_1738 2010265 - 2009162 - | putative inner membrane protein TERM 2014 2010937 - 2010952 + G 77 -4 -5.03747 | overlap 2010939 AGGCACCGGGTGTCA TTCAGT CGGT ACTGGA TTTTTTGGACGCTTT TERM 2015 2010987 - 2010977 - g 74 -6.8 -4.4078 | opp_overlap 2010962 CGCTTTGAAGCAAAA CGGT TTT ACCG GCGATACTGCTACTA TERM 2016 2013623 - 2013598 - g 95 -13.3 -3.87075 | ACGAGTGGTTACAAA CGGCTCTGGCT GATC AGCCAGAGCAG CAAATCAGTGGTGAG YpsIP31758_1739 2010903 - 2013959 + | oxidase, FAD binding ydiI 2014113 - 2014529 + | esterase YdiI TERM 2017 2014519 - 2014537 + F 78 -5.3 -5.03314 | gap 1 TAACGATCGCCGTAT TGACG-CG CTAA CGTCGTCA TTTTTTGCCAATAGC TERM 2018 2015290 - 2015302 + G 71 -6.9 -4.28977 | opp_overlap 2015289 TCGGCGTCAAACAGT CCGGT TGT GCCGG TTTTGCCTATGTTAT sufA 2015145 - 2015516 + | iron-sulfur cluster assembly scaffold protein TERM 2019 2016325 - 2016311 - g 79 -11.4 -3.1355 | GTCAGCTATATCGAA GGGTGC TCG GCACCC GTGCGCGACAGCTAT TERM 2020 2016408 - 2016382 - g 70 -2.3 -4.83615 | gap 1, opp_overlap 2016403, overlap 2016369 CATTCTGCACAAAAA TGCAGAGGTGAA GTAC TCCACCG-TGCA AAACTGGTTTGCAGG TERM 2021 2016886 - 2016873 - g 78 -5.3 -4.90906 | opp_overlap 2016873, overlap 2016864 CCACAACATCAAAAA TTGGT GATG ACCAA CTGTTCTATTGCTTG sufB 2015531 - 2017042 + | cysteine desulfurase activator complex subunit SufB sufC 2017227 - 2017973 + | cysteine desulfurase ATPase component sufD 2017948 - 2019273 + | cysteine desulfurase activator complex subunit SufD sufS 2019270 - 2020490 + | selenocysteine lyase TERM 2022 2020523 - 2020547 + F 91 -6.4 -5.43553 | opp_overlap 2020523 ACAGGCAATACCAAA GCCGACTATT CTTTC AGCAGTCGGC TTTTATTTTTTACGT sufE 2020579 - 2021001 + | cysteine desufuration protein SufE YpsIP31758_1747 2021272 - 2022336 + | ErfK/YbiS/YcfS/YnhG family protein TERM 2023 2022343 - 2022387 + T 90 -11.6 -3.66556 | gap 1, opp_overlap 2022381 2022385, overlap 2022344 AATAACTAATCACTT GTCTGCGCTTTACCGTGGTGG AGAT CCATCGTGGTAAAGC-CAGAA TTGTATTCCGCGCTT TERM 2024 2022344 - 2022386 + T 100 -15.1 -2.79452 | gap 1, opp_overlap 2022381 2022385, overlap 2022343 ATAACTAATCACTTG TCTGCGCTTTACCGTGGTGG AGAT CCATCGTGGTAAAGC-CAGA ATTGTATTCCGCGCT TERM 2025 2022657 - 2022675 + T 100 -14.6 -4.8622 | opp_overlap 2022657 CGTAGGGCAAAAAAA TGGCGCAC AAT GTGCGCCA TTTTTCATTCAGGAA TERM 2026 2022675 - 2022657 - T 100 -14.6 -5.44119 | opp_overlap 2022657 CGTAGGGCAAAAAAA TGGCGCAC AAT GTGCGCCA TTTTTCATTCAGGAA lpp 2022933 - 2022697 - | major outer membrane lipoprotein TERM 2027 2023199 - 2023228 + r 77 -10.8 -2.77344 | opp_overlap 2023199 2023204, overlap 2023204 GCAAGCTTTAAAAAA GAAAACGCCGCT ATAGAG AGCGGCGTTTTA ATTATTGAACAATAA TERM 2028 2023228 - 2023199 - R 100 -10.8 -5.055 | opp_overlap 2023199 2023204, overlap 2023204 GCAAGCTTTAAAAAA GAAAACGCCGCT ATAGAG AGCGGCGTTTTA ATTATTGAACAATAA TERM 2029 2023204 - 2023223 + r 100 -10.7 -4.56133 | opp_overlap 2023199 2023204, overlap 2023199 CTTTAAAAAAGAAAA CGCCGCT ATAGAG AGCGGCG TTTTAATTATTGAAC TERM 2030 2023223 - 2023204 - R 100 -10.7 -5.42198 | opp_overlap 2023204 2023199, overlap 2023199 CTTTAAAAAAGAAAA CGCCGCT ATAGAG AGCGGCG TTTTAATTATTGAAC pykF 2024666 - 2023254 - | pyruvate kinase TERM 2031 2023552 - 2023562 + g 73 -3.2 -4.89393 | GCGACCACAATCACT TTGG CTT CCAG TTTTTCTGCGGTTTC TERM 2032 2025834 - 2025844 + r 82 -6.8 -4.87803 | overlap 2025833 ATCCAGATGTTGTTG GGGA GAC TCCC TTTTATTTGAGACTA mdtK 2027296 - 2025923 - | multidrug efflux protein ribE 2027545 - 2028201 + | riboflavin synthase subunit alpha TERM 2033 2028242 - 2028213 - T 86 -5.7 -5.3236 | opp_overlap 2028213 2028216 2028218 2028220, overlap 2028216 ATAACCTACAAAAAA TAAGACAGGGG TTTTTATC CCCCTGTCTCC TATCTGAGGTTAGCG TERM 2034 2028239 - 2028216 - T 100 -9.6 -4.73105 | opp_overlap 2028216 2028213 2028218 2028220, overlap 2028213 ACCTACAAAAAATAA GACAGGGG TTTTTATC CCCCTGTC TCCTATCTGAGGTTA cfa 2029403 - 2028252 - | cyclopropane fatty acyl phospholipid synthase YpsIP31758_1753 2031085 - 2029883 - | inner membrane transport protein YdhC TERM 2035 2031825 - 2031845 + G 73 -4.5 -4.82128 | overlap 2031826 CATAGGGGCGACCCG TGCCATCCC AGT GGGTGGGCG TTTTGTCTTTCGTGA YpsIP31758_1754 2031376 - 2032308 + | putative DNA-binding transcriptional regulator TERM 2036 2032364 - 2032344 - T 84 -9.8 -3.85092 | opp_overlap 2032347, overlap 2032347 2032357 ACCATCGATAGCAAA TAACCGCA GGGAA TGCGGTTA TCCGAATCGGGCCGG TERM 2037 2032361 - 2032347 - T 72 -7.1 -4.05208 | opp_overlap 2032347, overlap 2032344 2032357 ATCGATAGCAAATAA CCGCA GGGAA TGCGG TTATCCGAATCGGGC YpsIP31758_1755 2033436 - 2032411 - | DNA-binding transcriptional repressor PurR TERM 2038 2032708 - 2032725 + g 83 -6.9 -4.9725 | opp_overlap 2032694 2032708, overlap 2032711 ATCGCCGCCACAGAA CACCGCC GTTG GGCGATG TTTTTGTGTCAGAAT TERM 2039 2032725 - 2032708 - G 71 -9.1 -3.48395 | opp_overlap 2032708 2032711, overlap 2032694 ATCGCCGCCACAGAA CACCGCC GTTG GGCGATG TTTTTGTGTCAGAAT TERM 2040 2033910 - 2033888 - R 100 -16.4 -3.6849 | opp_overlap 2033888, overlap 2033891 AGTGAACGGTAATAA TAAGGGCGGT TAA ACCGCCCTTA TTTATCTTATCGATG TERM 2041 2033888 - 2033910 + r 100 -16.4 -4.28188 | opp_overlap 2033888 2033891 AGTGAACGGTAATAA TAAGGGCGGT TAA ACCGCCCTTA TTTATCTTATCGATG TERM 2042 2033907 - 2033891 - R 100 -13.7 -3.97139 | opp_overlap 2033888, overlap 2033888 GAACGGTAATAATAA GGGCGGT TAA ACCGCCC TTATTTATCTTATCG sodB 2034541 - 2033963 - | superoxide dismutase TERM 2043 2034354 - 2034366 + g 85 -10.5 -4.1413 | opp_overlap 2034352 2034350 2034354 GCATTATTAAACACA CCGCC ATT GGCGG TTTTCACGATCTCTT TERM 2044 2034366 - 2034354 - G 75 -10.5 -3.31162 | opp_overlap 2034354, overlap 2034352 2034350 GCATTATTAAACACA CCGCC ATT GGCGG TTTTCACGATCTCTT YpsIP31758_1757 2035753 - 2034902 - | NlpC/P60 family lipoprotein TERM 2045 2035462 - 2035478 + g 71 -2.9 -4.87892 | overlap 2035462 CTGCAGTTTTACTTT CAGTTGT CCG ACTGCTG TTTATTTTATTGCGA TERM 2046 2035867 - 2035889 + H 88 -7 -5.1287 | opp_overlap 2035867 2035873, overlap 2035870 GATATTGTGAGAAAA CATTAATGGC GTT GCCATTGTTG TTTTTTCACTCTGAG TERM 2047 2035870 - 2035886 + H 81 -7.3 -4.65666 | opp_overlap 2035867 2035873, overlap 2035867 ATTGTGAGAAAACAT TAATGGC GTT GCCATTG TTGTTTTTTCACTCT grxD 2036193 - 2036543 + | hypothetical protein TERM 2048 2036647 - 2036624 - T 100 -12.5 -4.09551 | overlap 2036627 AAATGTGATAAATAA GAAGGTGGC GTAATG GCCACCTTC AGACTGCTGACAAAC TERM 2049 2036644 - 2036627 - T 79 -8.4 -4.15703 | overlap 2036624 TGTGATAAATAAGAA GGTGGC GTAATG GCCACC TTCAGACTGCTGACA TERM 2050 2036734 - 2036708 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2036717, overlap 2036709 2036724 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2051 2036735 - 2036709 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2036717, overlap 2036708 2036724 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2052 2036814 - 2036831 + T 100 -8.4 -5.26875 | opp_overlap 2036808 TGTCAATAACCTCAA GGTGGC GTAATG GCCACC TTTTTTAATTACAAG rnt 2037501 - 2036854 - | ribonuclease T TERM 2053 2037602 - 2037585 - R 87 -8.4 -4.48987 | opp_overlap 2037584 TTGTGATAAGTAAAA GGCACC GTCCGA GGTGCC CTTAAGTTAATCAGT gloA 2038020 - 2037613 - | lactoylglutathione lyase TERM 2054 2037707 - 2037689 - G 71 -4.6 -4.64676 | GGATCTTCAACAAAA GCAATAAT GGT ATTACCGC CTTTTACCGGGCCAG YpsIP31758_1761 2038677 - 2038459 - | hypothetical protein TERM 2055 2038836 - 2038805 - R 100 -13.2 -5.26119 | gap 1, opp_overlap 2038805 TCGCCAAAAATAAAA CAGCCAGCTAGGACT ATT AGT-CTAACTGGCTG TTATTGAAAGATTTA TERM 2056 2038805 - 2038836 + r 84 -11 -3.64283 | gap 1, opp_overlap 2038805 TCGCCAAAAATAAAA CAGCCAGCTAGGACT ATT AGT-CTAACTGGCTG TTATTGAAAGATTTA YpsIP31758_1762 2039962 - 2038865 - | N-ethylmaleimide reductase YpsIP31758_1763 2040649 - 2040050 - | TetR family transcriptional regulator TERM 2057 2040712 - 2040693 - R 100 -5.7 -5.80364 | AGGTCAAGAAAAAAA TGCCAAC CAAGGC GCTGGCA TCAAGGCTATGGTCT YpsIP31758_1764 2042529 - 2040892 - | putative cell division protein TERM 2058 2042404 - 2042393 - G 83 -4.4 -5.40072 | opp_overlap 2042393 GTTGCTGCAAAAAAA TAGC TGTC GCTA TTGTCGAATCGGATC TERM 2059 2042707 - 2042720 + G 77 -3.1 -5.27779 | overlap 2042703 TAGGAGGCAGCGTGG CTCAG CAAC TTGAG TTTTTTGATATTCCC TERM 2060 2042743 - 2042774 + G 100 -14.6 -4.51097 | gap 1, overlap 2042768 ATATTCCCAGCCCCT GCCGCGGT-ATCTGT CAA ACAGATGACCGTGGC TTTTGTCGTGGTTGC YpsIP31758_1765 2042577 - 2042942 + | hypothetical protein YpsIP31758_1766 2043074 - 2043970 + | aldo/keto reductase family oxidoreductase TERM 2061 2043978 - 2044006 + F 100 -8.9 -4.67942 | TCCCTTAATCTTTCT CTACGCCAATC GCGCTCA GACTGGCGTAG TTTTACTTTCTTCGG TERM 2062 2044606 - 2044626 + F 81 -5.5 -5.24531 | opp_overlap 2044609, overlap 2044609 TTAATCCTTAAGAGG TAATGTATC GTT GATACATCA TTTTTTCTAAAGAAT slyA 2044768 - 2045199 + | transcriptional regulator SlyA TERM 2063 2045293 - 2045261 - T 100 -11.3 -5.34555 | opp_overlap 2045268, overlap 2045267 2045268 CCACAGTACAAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 2064 2045287 - 2045267 - T 100 -12.5 -4.17307 | opp_overlap 2045268, overlap 2045261 2045268 TACAAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2065 2045268 - 2045286 + T 100 -16 -4.8048 | opp_overlap 2045267 2045261 2045268 ACAAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2066 2045286 - 2045268 - T 100 -16 -3.07944 | opp_overlap 2045268, overlap 2045267 2045261 ACAAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_1768 2045876 - 2045367 - | IS1541, transposase TERM 2067 2045938 - 2045956 + r 100 -16 -4.36914 | opp_overlap 2045938 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 2068 2045956 - 2045938 - R 100 -16 -3.07307 | opp_overlap 2045938 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 2069 2045975 - 2045997 + r 100 -15.6 -4.90906 | opp_overlap 2045975 TCTGGGCACAACAAA CCGGGGTTCG CAA TGAACCCCGG TTTTTACTGTTCTGA TERM 2070 2045997 - 2045975 - R 100 -14.9 -4.30719 | opp_overlap 2045975 TCTGGGCACAACAAA CCGGGGTTC GCAAT GAACCCCGG TTTTTACTGTTCTGA pcp2 2046520 - 2046053 - | outer membrane lipoprotein Pcp anmK 2047076 - 2048188 + | anhydro-N-acetylmuramic acid kinase YpsIP31758_1771 2048243 - 2048560 + | putative lipoprotein pdxH 2048651 - 2049304 + | pyridoxamine 5'-phosphate oxidase TERM 2071 2050205 - 2050191 - g 71 -8.6 -3.74693 | GCCGATGGCACTAAA TTCGGT AAA ACCGAA GGGGGTGCAGTCTGG TERM 2072 2050376 - 2050361 - g 76 -2.5 -5.21506 | overlap 2050371 AGAAGAAGATAAAAA CAGTG GTAAAG CACCG CGCGCGCAATATGTT tyrS 2049486 - 2050760 + | tyrosyl-tRNA synthetase TERM 2073 2050774 - 2050795 + F 87 -5.1 -5.52384 | opp_overlap 2050777, overlap 2050777 AAGCGTAAAATAAGA GAAGGGGCA GAAA TGTCCCTTA TTTTTTTGCTGAGAC TERM 2074 2050777 - 2050792 + F 82 -6.8 -4.8487 | opp_overlap 2050777, overlap 2050774 CGTAAAATAAGAGAA GGGGCA GAAA TGTCCC TTATTTTTTTGCTGA YpsIP31758_1774 2050915 - 2051775 + | pyridoxamine kinase TERM 2075 2051787 - 2051817 + T 100 -15.6 -3.51694 | opp_overlap 2051784, overlap 2051784 GTAATCTAACCATTT TCAATTGCCCCC TAGTGAT GGGGGCAATTGA TTGATTCTCATTATT YpsIP31758_1775 2052440 - 2051835 - | glutathionine S-transferase TERM 2076 2052550 - 2052579 + r 72 -9.3 -3.16553 | opp_overlap 2052544, overlap 2052549 GGGGCAATACAAGTC CTACAGCGGTG ATGATTTC CCCCGCTGTAG TGTATTGATAGTTGT YpsIP31758_1776 2052948 - 2052685 - | hypothetical protein TERM 2077 2053060 - 2053048 - R 74 -4.8 -4.84492 | TTAATGACAATAAAA GCCT GTTAG AGGC TCCAATGCTGATGGA YpsIP31758_1777 2053784 - 2053194 - | hypothetical protein TERM 2078 2054010 - 2054029 + r 81 -9.2 -3.77607 | opp_overlap 2054011, overlap 2054011 CTAACTAGCACTAAA AGCGCTCC CGCA GGAGCGCG TTTAGTCAGCTTATT TERM 2079 2054011 - 2054028 + r 89 -12.7 -2.85841 | opp_overlap 2054011, overlap 2054010 TAACTAGCACTAAAA GCGCTCC CGCA GGAGCGC GTTTAGTCAGCTTAT TERM 2080 2054028 - 2054011 - R 100 -12.7 -4.33105 | opp_overlap 2054011 2054010 TAACTAGCACTAAAA GCGCTCC CGCA GGAGCGC GTTTAGTCAGCTTAT YpsIP31758_1778 2055545 - 2054040 - | putative tripeptide transporter permease YpsIP31758_1779 2057471 - 2056191 - | hypothetical protein TERM 2081 2057820 - 2057801 - R 100 -12.2 -3.96534 | overlap 2057796 GTTAAAAGAAGATAA CCGCTATC AAAA GATAGCGG GGAGGTTAACCACCG sapF 2058676 - 2057861 - | peptide ABC transporter, ATP-binding protein SapF sapD 2059668 - 2058676 - | peptide ABC transporter, ATP-binding protein SapD TERM 2082 2059299 - 2059286 - G 78 -8.1 -4.42238 | opp_overlap 2059287 TTACGCCAATGAAAA CGCTG CCAC CAGCG GCCTTTATATGTCCA sapC 2060558 - 2059668 - | peptide ABC transporter, permease protein SapC sapB 2061510 - 2060545 - | peptide ABC transporter, permease protein SapB sapA 2063150 - 2061507 - | peptide ABC transporter, periplasmic peptide-binding protein TERM 2083 2063549 - 2063563 + r 70 -5.8 -4.28361 | ATTTACAATTGATAT TGATAA GTA TTATCA TTTTGATGCGATTCA TERM 2084 2063650 - 2063667 + r 100 -8.4 -5.81032 | CTTCCAGTATTTTAA GCCAGC TCGGGT GCTGGC TTTTTTTTACCCTTC pspF 2064758 - 2063730 - | phage shock protein operon transcriptional activator pspA 2065003 - 2065668 + | phage shock protein PspA pspB 2065830 - 2066057 + | phage shock protein B TERM 2085 2066104 - 2066084 - g 82 -5.3 -5.1675 | overlap 2066086 TTAGGCAGTAAAAAA CTGTACCGG GTA CCGGAAGAG GGCATGATCAAAGGG TERM 2086 2066170 - 2066191 + G 74 -3.1 -5.09173 | gap 1, overlap 2066171 AGTACGGTTGGTTCG C-GTGATAAT GGT GTTATCACTG TTTTTTGGCCTATTC TERM 2087 2066171 - 2066189 + G 71 -6.8 -4.16351 | overlap 2066170 GTACGGTTGGTTCGC GTGATAAT GGT GTTATCAC TGTTTTTTGGCCTAT pspC 2066057 - 2066416 + | DNA-binding transcriptional activator PspC pspD 2066501 - 2066743 + | peripheral inner membrane phage-shock protein TERM 2088 2067021 - 2067052 + G 73 -7.3 -4.1899 | gap 1, opp_overlap 2067005 TGGCCAACGCCGACC CGTGGCGTCAG-CG AAATC CGTCTGGCGTTACG TTTTCGCTCCAGTGA YpsIP31758_1790 2066724 - 2068121 + | hypothetical protein TERM 2089 2068758 - 2068740 - g 73 -8.8 -3.85817 | opp_overlap 2068753 2068754 AGGCTCGGGCAGAAA TCAGCCGC TAT GCTGCTGA ATCAGCGTTGATGAT YpsIP31758_1791 2068118 - 2069179 + | hypothetical protein YpsIP31758_1792 2069647 - 2069189 - | hypothetical protein YpsIP31758_1793 2070155 - 2069709 - | hypothetical protein tyrR 2070492 - 2072069 + | DNA-binding transcriptional regulator TyrR TERM 2090 2072116 - 2072140 + T 88 -10 -4.18494 | gap 1, opp_overlap 2072116 AAGAGTAATAAAAAA CGGCTGTACCC GAGT GGG-GCAGCCG TTTTGAGTCACGATA TERM 2091 2072140 - 2072116 - T 100 -7.8 -5.54885 | gap 1, opp_overlap 2072116 AAGAGTAATAAAAAA CGGCTGTACCC GAGT GGGG-CAGCCG TTTTGAGTCACGATA tpx 2072733 - 2072230 - | thiol peroxidase TERM 2092 2072839 - 2072819 - H 70 -2.5 -5.01732 | overlap 2072820 AAGTTCGCTAAAAAA CCCGTTTAA AGA CTTAACGGA TAAACGTATGAGGGT TERM 2093 2072861 - 2072845 - H 71 -9.5 -2.98368 | overlap 2072844 ACTTAACGGATAAAC GTATGAG GGT CTCATAC CTAAGCTAAAACTGT YpsIP31758_1796 2072896 - 2073870 + | mandelate racemase/muconate lactonizing family protein YpsIP31758_1797 2074682 - 2073912 - | murein peptide amidase A mppA 2075059 - 2076675 + | murein tripeptide ABC transporter, periplasmic murein peptide-binding protein TERM 2094 2076706 - 2076736 + F 93 -9 -4.54323 | opp_overlap 2076708, overlap 2076708 2076712 TGTTTTTAACTAATT AACAGAGGCGGATT TTA AATCCGCCTTTGCA TTTATTCTTGTCCTT TERM 2095 2076734 - 2076708 - f 100 -13.8 -3.45366 | opp_overlap 2076708 2076706 2076712 TTTTTAACTAATTAA CAGAGGCGGATT TTA AATCCGCCTTTG CATTTATTCTTGTCC TERM 2096 2076708 - 2076734 + F 100 -16 -2.57496 | opp_overlap 2076708, overlap 2076706 2076712 TTTTTAACTAATTAA CAGAGGCGGATT TTA AATCCGCCTTTG CATTTATTCTTGTCC TERM 2097 2076712 - 2076730 + F 100 -13.2 -3.95772 | opp_overlap 2076708, overlap 2076708 2076706 TAACTAATTAACAGA GGCGGATT TTA AATCCGCC TTTGCATTTATTCTT zntB 2076918 - 2077901 + | zinc transporter TERM 2098 2078099 - 2078122 + T 100 -14 -5.60993 | ATTTAATTGTTACGG TGCCGATGTT GAAA AACATCGGCA TTTTTTTGTGCGCCG YpsIP31758_1800 2079114 - 2078275 - | MerR family transcriptional regulator TERM 2099 2078913 - 2078927 + g 91 -7.2 -5.26875 | opp_overlap 2078913 TGGATGAGTAATCCA TCAAGA TGC TCTTGA TTTTTTCATTAGAAA TERM 2100 2079309 - 2079283 - R 80 -8.7 -3.9749 | gap 1, overlap 2079284 AGGCAGAAGAGTAAA GCGTCCGCGCCA GTAG TGGCGCGGAT-C TAGCCCCCATGGAAG TERM 2101 2079423 - 2079400 - R 71 -8.8 -3.38991 | opp_overlap 2079401 2079403, overlap 2079398 2079403 ACTTTGCCAATAACA TCAGTGGGCC ATTT GGCCCACTAT TTTTACTGGCTATGA TERM 2102 2079401 - 2079422 + r 100 -10.1 -4.76041 | opp_overlap 2079400 2079398 2079403, overlap 2079403 CTTTGCCAATAACAT CAGTGGGCC ATTT GGCCCACTA TTTTTACTGGCTATG TERM 2103 2079403 - 2079420 + r 100 -12.7 -3.99327 | opp_overlap 2079400 2079398 2079403, overlap 2079401 TTGCCAATAACATCA GTGGGCC ATTT GGCCCAC TATTTTTACTGGCTA TERM 2104 2079420 - 2079403 - R 89 -12.7 -2.85545 | opp_overlap 2079403 2079401, overlap 2079400 2079398 TTGCCAATAACATCA GTGGGCC ATTT GGCCCAC TATTTTTACTGGCTA YpsIP31758_1801 2080430 - 2079426 - | hypothetical protein TERM 2105 2080726 - 2080739 + r 71 -2.3 -5.09685 | TCCAACACATCAAGG CGTAC TGGT GGACG TTTTTCTGTGTCTTC YpsIP31758_1802 2081642 - 2080701 - | C32 tRNA thiolase TERM 2106 2081572 - 2081582 + g 83 -8.2 -4.64144 | overlap 2081557 GCTTGGCCGACGTTA CGGC GCA GCCG TTTTTGCAGCTTGTT TERM 2107 2081892 - 2081867 - R 100 -13.4 -5.1167 | opp_overlap 2081863 AAGGTAATAGAAAAA GCCAGTTAGC GGTTTA GCTAACTGGC TCAGTAAATTGCACG YpsIP31758_1803 2085460 - 2081927 - | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 2108 2083014 - 2082999 - G 75 -10.4 -3.40403 | opp_overlap 2082997 GGTGTTTCACCACAA CCGGAG CAGG CTCCGG AATATTCGAACAGCG YpsIP31758_1804 2085939 - 2086271 + | multidrug resistance protein, SMR family protein YpsIP31758_1805 2086990 - 2086331 - | putative Mg(2+) transport ATPase YpsIP31758_1806 2087224 - 2087634 + | putative lipoprotein hslJ 2088144 - 2087692 - | heat-inducible protein ldhA 2089206 - 2088214 - | fermentative lactate dehydrogenase TERM 2109 2091834 - 2091848 + G 79 -11.4 -3.13908 | opp_overlap 2091831 GTGAGAGCAATACTG TCGCCG GTG CGGCGA TTGACTGGTTGCGTT YpsIP31758_1809 2089472 - 2092204 + | hypothetical protein YpsIP31758_1810 2092201 - 2092395 + | putative lipoprotein YpsIP31758_1811 2092405 - 2092776 + | hypothetical protein YpsIP31758_1812 2094422 - 2093031 - | putative D-arabinitol 4-dehydrogenase TERM 2110 2093717 - 2093740 + g 71 -3.1 -5.00616 | gap 1, overlap 2093723 ATGATTCCCCCATCA CCGG-AGCGT TATCT ACGATACCGG TTTTTTCCAACACCC TERM 2111 2094483 - 2094494 + H 70 -7.2 -3.86283 | ATAAATTCAATATTT GGGC ATTT GCCC TTTCGTGTAGGTTAA YpsIP31758_1813 2094632 - 2095588 + | sugar-binding domain-containing protein TERM 2112 2095610 - 2095593 - T 100 -14.1 -5.35222 | AAAAGGCATAAAAAA GCGCGCC GGTT GGCGCGC AATCATCACATGGCT azoR 2096314 - 2095709 - | azoreductase TERM 2113 2096398 - 2096417 + H 72 -6.4 -4.3351 | overlap 2096400 TTTTGCTACCAGTGA TAGCGCAA TATT TTGCGCTC TTTGTTCGATTTTAT TERM 2114 2096400 - 2096415 + H 78 -9 -3.75005 | overlap 2096398 TTGCTACCAGTGATA GCGCAA TATT TTGCGC TCTTTGTTCGATTTT TERM 2115 2099003 - 2099013 + G 71 -8.2 -3.63694 | AAGGTGACTGGCAGA CGCG GCA CGCG TTCTTCCGAATGAAT TERM 2116 2099081 - 2099068 - g 75 -8.1 -4.19624 | opp_overlap 2099068 2099066 GAGTTGGAACACAAA TCCCG TCGG CGGGA TATTCTGGTCGATGA hrpA 2096737 - 2100624 + | ATP-dependent RNA helicase HrpA TERM 2117 2100634 - 2100674 + F 100 -8.4 -5.48514 | gap 1, overlap 2100637 GTCTGATTGATGCCC CTATTCGACGCCTGAG-CT ATCT AGACTTAGGCGTCGAATTC TTTTTATTTCTTAGT TERM 2118 2100637 - 2100671 + F 100 -14.5 -4.78345 | gap 1, overlap 2100634 TGATTGATGCCCCTA TTCGACGCCTGAG-CT ATCT AGACTTAGGCGTCGAA TTCTTTTTATTTCTT YpsIP31758_1816 2100921 - 2101292 + | hypothetical protein YpsIP31758_1817 2101289 - 2101612 + | DNA-binding protein YpsIP31758_1818 2102504 - 2101668 - | putative protease TERM 2119 2102753 - 2102770 + r 93 -12.7 -3.09208 | opp_overlap 2102753, overlap 2102755 ACTCCTGATAAAAAA CACCCGG AGAA CCGGGTG TTGAGTGAATCATTT TERM 2120 2102770 - 2102753 - R 100 -12.7 -5.24531 | opp_overlap 2102753 2102755 ACTCCTGATAAAAAA CACCCGG AGAA CCGGGTG TTGAGTGAATCATTT TERM 2121 2102755 - 2102768 + r 72 -9.5 -3.10056 | opp_overlap 2102753, overlap 2102753 TCCTGATAAAAAACA CCCGG AGAA CCGGG TGTTGAGTGAATCAT asr 2103122 - 2102838 - | acid shock protein TERM 2122 2103153 - 2103168 + H 71 -8.2 -3.41051 | opp_overlap 2103152 GTTCTATTCATATAC CGGCCC CGTT GGGTCG TTATAATCAGAGTAG YpsIP31758_1820 2103726 - 2104280 + | cytochrome b561 family protein YpsIP31758_1821 2104306 - 2104884 + | hypothetical protein TERM 2123 2104909 - 2104922 + F 70 -8.1 -3.72051 | opp_overlap 2104909, overlap 2104896 GTCACCTTATAAAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAC TERM 2124 2104922 - 2104909 - f 91 -8.1 -4.85599 | opp_overlap 2104896 2104909 GTCACCTTATAAAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAC TERM 2125 2105087 - 2105114 + F 78 -9.2 -3.61715 | opp_overlap 2105094, overlap 2105074 2105088 2105094 GGGGTTTGTCAGCAG TCTGAAAGGAGC TTTG GCTCCTTTGAGG TTATTGAAAAAGCTA TERM 2126 2105088 - 2105113 + F 75 -10.5 -2.76815 | opp_overlap 2105094, overlap 2105087 2105074 2105094 GGGTTTGTCAGCAGT CTGAAAGGAGC TTTG GCTCCTTTGAG GTTATTGAAAAAGCT TERM 2127 2105094 - 2105107 + F 70 -8.1 -3.72051 | opp_overlap 2105094, overlap 2105088 2105087 2105074 GTCAGCAGTCTGAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAA TERM 2128 2105107 - 2105094 - f 70 -8.1 -3.58343 | opp_overlap 2105094 2105088 2105087 2105074 GTCAGCAGTCTGAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAA TERM 2129 2105177 - 2105189 + F 80 -9.1 -3.95435 | CCTCGGGGCGCTCCG GTGGC TAC GCCAC TTATATTTTAACCCC YpsIP31758_1822 2105448 - 2105606 + | hypothetical protein TERM 2130 2105651 - 2105682 + T 86 -10.4 -3.79043 | opp_overlap 2105655, overlap 2105650 GTGTGAATTTTTTAG GATAGTTATATCCA TTTC TGAATATAACTATC TTTCGGTTAGTAATG TERM 2131 2105727 - 2105717 - T 75 -5.4 -4.78752 | ACTACAACTTAAAAA CCAA AAA TTGG ACTATGCTCTGGAGT YpsIP31758_1823 2108694 - 2105710 - | putative toxin protein TERM 2132 2106051 - 2106041 - G 74 -4 -4.98522 | opp_overlap 2106041 AAGGGGAGAGAAAAA TTAC CAC GTAA TAACTTATGAGGCAC TERM 2133 2106663 - 2106646 - G 71 -6.3 -4.27441 | ATTACGATCAATAAA CGCAACA GGAT TATTGCG CGCCATCCTGAACAG TERM 2134 2106778 - 2106803 + g 72 -6.1 -4.47328 | CAACCCCGTCGCATC CCGTTCCTTAC CAGA GTAGCGGACGG TTTTGTAATCCGCTT TERM 2135 2107367 - 2107379 + g 74 -4.1 -4.95155 | overlap 2107364 CCCCGGTTGCTGCGG TCACT GAC GGTGA TTTTTGTGGTGTAGC TERM 2136 2108192 - 2108204 + g 80 -4.7 -5.03314 | CTGACGCACGCGCCG GCCAG GTT CAGGC TTTTTTCCGCGTCAG YpsIP31758_1824 2111032 - 2109533 - | putative thermostable carboxypeptidase I rstB 2112430 - 2111126 - | sensor protein RstB rstA 2113176 - 2112430 - | DNA-binding transcriptional regulator RstA TERM 2137 2113664 - 2113642 - g 85 -12 -3.39595 | opp_overlap 2113656, overlap 2113643 CTGAATTAGGGAGAA CGCCGCAAGC TCA GCTTACGGCA TTGGCGCTGCAAGTA TERM 2138 2113663 - 2113643 - g 84 -13.3 -2.63435 | opp_overlap 2113656, overlap 2113642 TGAATTAGGGAGAAC GCCGCAAGC TCA GCTTACGGC ATTGGCGCTGCAAGT YpsIP31758_1827 2113473 - 2113889 + | hypothetical protein YpsIP31758_1828 2115304 - 2113913 - | putative arginine/ornithine antiporter ArcD TERM 2139 2114766 - 2114748 - G 79 -10.4 -3.68619 | GCTAAGCCAGTGAAA TCGATACT AAA AGTATCGA GGCTAAATGCGATGC TERM 2140 2115567 - 2115543 - R 82 -7.8 -4.4727 | overlap 2115546 GCAACACGGATAAAA GAAGGGCAGC ACTTG GCCGCCCTTA AGATAATTATTTGAA TERM 2141 2115564 - 2115546 - R 88 -9.5 -4.33785 | overlap 2115543 ACACGGATAAAAGAA GGGCAGC ACTTG GCCGCCC TTAAGATAATTATTT YpsIP31758_1829 2116527 - 2115574 - | hypothetical protein TERM 2142 2118110 - 2118085 - g 79 -3.2 -5.19879 | TTGCAAAGAGAAAAA CGGCGAGATC GATATT GATTTCGACG ATACCGTGATTCGCG pntA 2117057 - 2118583 + | NAD(P) transhydrogenase subunit alpha pntB 2118656 - 2120050 + | pyridine nucleotide transhydrogenase TERM 2143 2120080 - 2120103 + T 100 -11 -4.28049 | overlap 2120083 CATCCATTGTATTGC TCAGGGCCAC TTCG GTGGCCCTTA TTTTAGGATTTTACG TERM 2144 2120083 - 2120100 + T 100 -12.7 -4.24443 | overlap 2120080 CCATTGTATTGCTCA GGGCCAC TTCG GTGGCCC TTATTTTAGGATTTT uspE 2121097 - 2120141 - | universal stress protein UspE fnr 2121984 - 2121232 - | fumarate/nitrate reduction transcriptional regulator ogt 2122575 - 2122057 - | methylated-DNA--protein-cysteine methyltransferase YpsIP31758_1835 2122833 - 2124278 + | bacterial alkaline phosphatase TERM 2145 2124303 - 2124325 + F 100 -9.9 -4.96646 | gap 1 TATCTCACTGGAACG TCCCGGCGCA GTAA TG-GCCGGGA TTTTTGCTTATGTCC TERM 2146 2124491 - 2124481 - f 78 -5.4 -4.96848 | opp_overlap 2124488 TTGGGTATAGAAAAA TGCA TCC TGCA GACTGCATCATTTCA TERM 2147 2124669 - 2124700 + F 100 -8.8 -4.97666 | opp_overlap 2124669 TGACTTATTATTTAA CCCATTAACTGCAC TTAA GTGAAATTAATGGG TTTTTCTGCTGTGTT TERM 2148 2124700 - 2124669 - f 79 -11 -3.10164 | opp_overlap 2124669 TGACTTATTATTTAA CCCATTAACTGCAC TTAA GTGAAATTAATGGG TTTTTCTGCTGTGTT TERM 2149 2124706 - 2124722 + F 71 -8.7 -3.39908 | AATTAATGGGTTTTT CTGCTGT GTT ACGGCAG TCTGTTTTAAAAAAA YpsIP31758_1836 2124825 - 2127221 + | hypothetical protein YpsIP31758_1837 2127367 - 2128041 + | nucleotidase TERM 2150 2128100 - 2128058 - T 100 -15 -3.65046 | opp_overlap 2128068 2128098 2128099, overlap 2128059 TCCCTACTCGAATAA GCCCGTTAAACCCTGTCG GCAGTAA CGACAGGGTTTAACGTGT GACAACGTCACCTTT TERM 2151 2128099 - 2128059 - T 100 -18.5 -2.78813 | opp_overlap 2128068 2128098, overlap 2128058 CCCTACTCGAATAAG CCCGTTAAACCCTGTCG GCAGTAA CGACAGGGTTTAACGTG TGACAACGTCACCTT TERM 2152 2128068 - 2128090 + T 82 -10.6 -3.63627 | opp_overlap 2128059 2128058 AATAAGCCCGTTAAA CCCTGTCG GCAGTAA CGACAGGG TTTAACGTGTGACAA YpsIP31758_1838 2128455 - 2128108 - | acetolactate synthase 1 regulatory subunit ilvB2 2130124 - 2128457 - | acetolactate synthase catalytic subunit TERM 2153 2129254 - 2129270 + g 79 -10.9 -3.59979 | TAATATTGGCATGAG GGCAGAA TTG TTCTGCC TTTCCGATGGCCCGA TERM 2154 2130204 - 2130180 - R 100 -15 -4.96501 | gap 1, opp_overlap 2130180 GGCGATAAAAAGAAA CCCCGCTCGGC TGGC GCCG-GCGGGG TTTGGGAATCTTTCT TERM 2155 2130180 - 2130204 + r 100 -15 -3.6292 | gap 1, opp_overlap 2130180 GGCGATAAAAAGAAA CCCCGCTCGGC TGGC GCCG-GCGGGG TTTGGGAATCTTTCT ivbL 2130329 - 2130234 - | ilvB operon leader peptide YpsIP31758_1841 2130712 - 2131506 + | putative lipoprotein TERM 2156 2131603 - 2131629 + T 91 -7.9 -4.84017 | opp_overlap 2131603 CTGCTGTTTAAAAAA TGCGCTTCTCC GTCGG GGAGTTGCGCA TTTTTGTGGCACGTT TERM 2157 2131629 - 2131603 - T 95 -7.9 -5.00616 | opp_overlap 2131603 CTGCTGTTTAAAAAA TGCGCTTCTCC GTCGG GGAGTTGCGCA TTTTTGTGGCACGTT YpsIP31758_1842 2134215 - 2131675 - | hypothetical protein TERM 2158 2133532 - 2133549 + g 71 -8.4 -3.62616 | AGGCCAGAAGTGAGT CGCCAG TTCTTT CTGGCG TTGTGTGTCGTGGTG TERM 2159 2133712 - 2133686 - G 76 -9.4 -3.82604 | TCATCCAACGAATAA GCTGGATTTTCC TGA GGGCAATCCAGC AAGAAGGCACGGGTG YpsIP31758_1843 2137283 - 2134212 - | putative virulence factor SrfB TERM 2160 2137093 - 2137073 - G 78 -11.1 -3.30243 | ATTCAGGTTTCACAA TCTCAGGGG CTG CCCCTGGGA GCATCAGTGAATATT TERM 2161 2137225 - 2137213 - G 81 -7.7 -4.54727 | overlap 2137215 GGCGTTAAAGCAAAA TCCAG GAA CTGGA TCCCACTATCCTGAA YpsIP31758_1844 2138766 - 2137288 - | hypothetical protein TERM 2162 2138187 - 2138201 + gH 75 -5.6 -4.62904 | opp_overlap 2138176 ATAACTCAACCGCTG CGGGTG TGA CAACCG TTTTTGCCCGTATTT TERM 2163 2138428 - 2138448 + gH 71 -3.9 -4.77925 | overlap 2138429 TTTCGCGAGTAATGC CCCGAACAA CTG TTGTGCGGC TTTTTCCGATTTTTT YpsIP31758_1845 2138754 - 2138867 + | hypothetical protein TERM 2164 2139456 - 2139438 - g 91 -11.8 -4.09243 | CAGATCTGGCTAAAA TCGGTGAT GGC ATCACCGA CGGAATTGAAACGAT TERM 2165 2139805 - 2139779 - g 71 -3 -5.00616 | overlap 2139781 CTGGCGTGGAAAAAA CATCAGATGCCA GCC TATCACCTGATA GCCAAAAATGGGCAG amn 2138972 - 2140462 + | AMP nucleosidase TERM 2166 2140514 - 2140481 - T 100 -10.3 -4.74453 | gap 1, opp_overlap 2140482 2140484, overlap 2140484 GAATAGATTGAAAAA CAACGCAGGCGGATGA TGA TCA-CCGCCTGCGTAT TGAATTGAGAGAGCT TERM 2167 2140482 - 2140513 + T 100 -13.8 -3.17075 | gap 1, opp_overlap 2140481 2140484, overlap 2140484 AATAGATTGAAAAAC AACGCAGGCGGATGA TGA TCA-CCGCCTGCGTA TTGAATTGAGAGAGC TERM 2168 2140511 - 2140484 - T 100 -16.4 -4.46215 | gap 1, opp_overlap 2140484 2140482, overlap 2140481 TAGATTGAAAAACAA CGCAGGCGGATGA TGA TCA-CCGCCTGCG TATTGAATTGAGAGA TERM 2169 2140484 - 2140511 + T 100 -16.4 -3.14878 | gap 1, opp_overlap 2140481 2140484, overlap 2140482 TAGATTGAAAAACAA CGCAGGCGGATGA TGA TCA-CCGCCTGCG TATTGAATTGAGAGA YpsIP31758_1847 2141705 - 2140887 - | ABC transporter ATP-binding protein TERM 2170 2141580 - 2141568 - G 71 -6.3 -4.29493 | CAGTAAACAGACAAA TTCAC CAT GTGAA ATATGAAGATTTATT YpsIP31758_1848 2142536 - 2141715 - | ABC transporter permease TERM 2171 2142131 - 2142111 - G 88 -2.3 -5.86965 | overlap 2142112 ACTTATCAAAAAAAA TGCCGGCGG ATT CCCCAGGCC GAACCACAGCATCGC YpsIP31758_1849 2143571 - 2142540 - | ABC transporter, periplasmic substrate-binding protein TERM 2172 2142836 - 2142857 + g 73 -8.7 -3.93583 | ACAGTTTAAGTACGC GAGCAGCCA CCTC TGGCTTCTC TTTATACATGGCTTC TERM 2173 2143302 - 2143327 + g 72 -10.5 -3.01708 | gap 1, opp_overlap 2143301 2143302 GGCCGCTATATCAAT TTGC-CCCGCGA CGA TTGCGGGAGCAA TATCTATCCCCTTTG TERM 2174 2143887 - 2143871 - H 70 -5.9 -4.33105 | opp_overlap 2143883 TAATTAGCATCAAAA CATACAC ATT ATGTATG AAAATCACACTTCCT YpsIP31758_1850 2144326 - 2144979 + | hypothetical protein rbsA3 2144976 - 2146514 + | ribose ABC transporter, ATP-binding protein TERM 2175 2146830 - 2146845 + G 73 -2.4 -5.14563 | CGACATTGGGTCTGT CTGGCG TATT CGCGGG TTTTTTAATGCAAGG TERM 2176 2147086 - 2147069 - g 78 -7.7 -4.35604 | gap 1, opp_overlap 2147073, overlap 2147065 TTAACCTACAACAAA CTCGCGGG TAG CCC-CGAG TTGGGGAATACCGGT rbsC3 2146541 - 2147602 + | ribose ABC transporter, permease protein rbsB3 2147801 - 2148751 + | ribose ABC transporter, periplasmic ribose-binding protein YpsIP31758_1854 2148895 - 2149365 + | hypothetical protein YpsIP31758_1855 2149429 - 2150445 + | LacI family sugar-binding transcriptional regulator nhaC 2150590 - 2152044 + | Na+/H+ antiporter NhaC YpsIP31758_1857 2152031 - 2153209 + | aminotransferase, classes I and II ypmA 2153920 - 2154375 + | superantigen YpmA YpsIP31758_1859 2155632 - 2154709 - | integral membrane protein TERM 2177 2155105 - 2155115 + g 80 -6.8 -4.72029 | opp_overlap 2155100 TGTGATAACAGAGAC GGTG CAG CACC TTTTCTTGCATTGCG YpsIP31758_1860 2155876 - 2155989 + | hypothetical protein TERM 2178 2156614 - 2156653 + G 79 -10.8 -3.44334 | opp_overlap 2156623, overlap 2156623 GATTGGGCTTCAGAC CCCTTCAAAGACCGGTCA CTAA TAACCGGTCTTTGAAACG TTACTCTTCATTTAA TERM 2179 2156644 - 2156623 - g 79 -10.9 -3.55071 | opp_overlap 2156623 2156614 TCAGACCCCTTCAAA GACCGGTCA CTAA TAACCGGTC TTTGAAACGTTACTC YpsIP31758_1861 2156140 - 2156649 + | hypothetical protein YpsIP31758_1862 2158264 - 2156744 - | aldehyde dehydrogenase (NAD) family protein TERM 2180 2158529 - 2158507 - H 82 -7.9 -4.43012 | ATCGCAACATTAAAA TCATTATTG AGCCA CAATAATGA TACATGTGTAGCGAA TERM 2181 2158774 - 2158730 - g 100 -20.3 -2.78816 | opp_overlap 2158719, overlap 2158734 2158771 2158772 TCACGCCGTATTACA GCAATTTTCTCAGCCAACAGT GAA AGCGCTGGCTGAGAAAATTGC CGATAAGCAATCGGT TERM 2182 2158770 - 2158734 - g 93 -13.9 -3.29471 | overlap 2158730 GCCGTATTACAGCAA TTTTCTCAGCCAACAGT GAA AGCGCTGGCTGAGAAAA TTGCCGATAAGCAAT YpsIP31758_1863 2158560 - 2160377 + | sigma-54 dependent transcriptional regulator YpsIP31758_1864 2160491 - 2161240 + | 3-hydroxy acid dehydrogenase YpsIP31758_1865 2161467 - 2161841 + | hypothetical protein TERM 2183 2162172 - 2162182 + G 77 -8.2 -4.13945 | ATTAGCAATGGCGTG CCGG AAT CCGG TTTTAAGCTGGAAAT YpsIP31758_1866 2162055 - 2162300 + | putative lipoprotein TERM 2184 2162321 - 2162341 + F 100 -9.7 -4.66537 | TTCCCTCCCTGCTAA GGCGTAGCA TCG TGGTACGCC TTTTATATTGAACAA TERM 2185 2163177 - 2163191 + G 77 -4.9 -4.85782 | TCTAGGATTAATGGC GGGCT TCAGC GGCCC TTTATTTTTAAAAGC TERM 2186 2163589 - 2163605 + G 70 -7.9 -3.91197 | overlap 2163593 GCAGCAACGACCCAT GCGCCCA TTA TGGCCGC TTTAATGGTTTGTGA YpsIP31758_1867 2162482 - 2163726 + | putative voltage-gated ClC-type chloride channel ClcB bioD1 2164500 - 2163832 - | dethiobiotin synthase TERM 2187 2164689 - 2164713 + r 75 -10.3 -2.84602 | opp_overlap 2164693 2164696, overlap 2164688 2164696 GACCGAAGGTACCCA CTAATAATTAA CTC TTAATTATTAG ATTTAATACACTAGC mlc 2165941 - 2164724 - | Mlc protein TERM 2188 2166081 - 2166094 + r 87 -5.3 -5.47846 | overlap 2166066 TTATGTGATTTGCTG CACAT AATC ATGTG TTTTCTTTTTTCCTT YpsIP31758_1870 2167034 - 2166120 - | LysR family substrate binding transcriptional regulator YpsIP31758_1871 2167277 - 2168545 + | major facilitator transporter TERM 2189 2169341 - 2169328 - g 79 -3.7 -5.29782 | TACAGCTAGAAAAAA GCCTG AATG CTGGC CGAGCTGTTCCTCCA tus 2168751 - 2169686 + | DNA replication terminus site-binding protein TERM 2190 2169743 - 2169723 - T 71 -6.8 -4.11692 | opp_overlap 2169723 TAGCCACTGTGAAAA CGCCGG TAATCCACC CCGGCG TTAATATAACAATGT fumC 2171163 - 2169766 - | fumarate hydratase TERM 2191 2171804 - 2171785 - g 71 -2.8 -4.86731 | gap 1, overlap 2171789 TTTTGCTAAAGAAAA CCAGGCAGG TAT CCCAC-TGG ATGCGGCTGAGCGCA manA 2171447 - 2172622 + | mannose-6-phosphate isomerase, class I TERM 2192 2172749 - 2172762 + F 71 -3.1 -5.07107 | GGCCTATATTATTTG GGAGA TATA TCTTC TTTTTTGGGGATTTC TERM 2193 2173123 - 2173137 + G 71 -6.4 -4.19336 | AAAGTATTGAGCGAT GGTGAT GAA ATCGCC TTTATTGAAGTCATT TERM 2194 2173963 - 2173945 - g 71 -7.4 -4.13748 | TGGAAAAATACTAAA GGGGAAAG TAC CTTTACCC TGAATATCGAACTGA TERM 2195 2174029 - 2174011 - g 74 -3 -5.16206 | AAATCAACAGAAAAA CCACTGAT AGC ACCCGCGG TGAAAAAATTGGACG TERM 2196 2174048 - 2174038 - g 78 -5.4 -5.00616 | CCCGCGGTGAAAAAA TTGG ACG CCAA CCTGAGCATTCCAAT YpsIP31758_1875 2172862 - 2174406 + | hypothetical protein TERM 2197 2174435 - 2174452 + F 100 -12.7 -4.72272 | opp_overlap 2174435 TTTGTTTGATAAAAA CGGAGCC CATT GGCTCCG TTTTTAATGCGAACC TERM 2198 2174452 - 2174435 - f 100 -12.7 -4.82901 | opp_overlap 2174435 TTTGTTTGATAAAAA CGGAGCC CATT GGCTCCG TTTTTAATGCGAACC YpsIP31758_1876 2174747 - 2175676 + | hypothetical protein YpsIP31758_1877 2177105 - 2175849 - | hypothetical protein TERM 2199 2178472 - 2178462 - g 83 -6.8 -4.91084 | CAGCGAACAAGAAAA GCAG GCA CTGC GGGATAAAGTATTCC add 2177494 - 2178498 + | adenosine deaminase TERM 2200 2178564 - 2178536 - f 100 -8.1 -5.86976 | opp_overlap 2178536 CGATAAAATAAAAAA GCGCCCATACC CTAGAGT GGTACCGGCGC TTTCTATTTTCATCA TERM 2201 2178536 - 2178564 + F 73 -5.9 -4.48449 | opp_overlap 2178536 CGATAAAATAAAAAA GCGCCCATACC CTAGAGT GGTACCGGCGC TTTCTATTTTCATCA YpsIP31758_1879 2178552 - 2178665 + | hypothetical protein YpsIP31758_1880 2179701 - 2178673 - | putative sodium/bile acid symporter family protein TERM 2202 2179090 - 2179110 + g 89 -6.1 -5.27923 | opp_overlap 2179090, overlap 2179092 CAACAAAATAGATGA CCGGTCAGT GAT ATTGACCAG TTTTTTGTGCCGTTC TERM 2203 2179850 - 2179823 - R 100 -4.2 -6.32976 | gap 1, opp_overlap 2179823 AAAAAAATAAAAAAA CTCTGGGCCAC GGAGATT GTG-CCCAAAG AGATATTTCCACCCT TERM 2204 2179905 - 2179921 + r 78 -2.2 -5.49569 | AAACATCAATTTTTA GCAATG ATCGG CAGTGC TTTTTTCTGTTGATC YpsIP31758_1881 2180944 - 2179895 - | putative oxidoreductase araC 2182004 - 2181072 - | DNA-binding transcriptional regulator AraC araH 2183288 - 2182239 - | L-arabinose transporter permease protein araG 2184877 - 2183306 - | L-arabinose transporter ATP-binding protein araF 2185958 - 2184975 - | L-arabinose ABC transporter, periplasmic L-arabinose-binding protein TERM 2205 2185711 - 2185753 + g 74 -6.8 -4.38712 | GTACAAATAACGAAA CCTTGGGCACCACTGGCCGC CAG GCTGTCGATGGCGTTCAGGG TTTTCTCGCCATCAG araB 2186365 - 2188068 + | ribulokinase araA 2188152 - 2189654 + | L-arabinose isomerase TERM 2206 2189718 - 2189702 - g 73 -5.1 -4.49311 | opp_overlap 2189709 2189712, overlap 2189703 2189714 ATCAGTATTATAAAA TTCGCTA TGA TAGCGAC ACCCTCAGAGGCCTG YpsIP31758_1888 2189654 - 2189788 + | hypothetical protein YpsIP31758_1889 2192004 - 2189866 - | type I secretion system ATPase YpsIP31758_1890 2193376 - 2192006 - | type I secretion membrane fusion protein, HlyD family protein YpsIP31758_1891 2195568 - 2193421 - | toxin ABC transporter, ATP-binding/permease protein TERM 2207 2194788 - 2194804 + g 72 -10.9 -2.59793 | overlap 2194787 2194785 ATGTCAGGGCCGAAC CCGTGAT GAA ATCACGG ATATTATCTAACTCA YpsIP31758_1892 2195786 - 2195938 + | hypothetical protein TERM 2208 2196411 - 2196425 + G 73 -7.1 -4.21997 | overlap 2196416 AACACTCGGGTGGCC GCTGC TAGCT GCAGC TATTTTTGTTCCTTA TERM 2209 2196416 - 2196427 + G 80 -4.4 -5.1963 | overlap 2196411 TCGGGTGGCCGCTGC TAGC TGCA GCTA TTTTTGTTCCTTACA YpsIP31758_1893 2196043 - 2196486 + | hypothetical protein TERM 2210 2196561 - 2196586 + F 87 -5.4 -5.55855 | ATCTGTTGTCGTCGG GCCGTCAATT TTGGAT AATAGGCGGC TTTTATTTTTTTAGG YpsIP31758_1894 2196614 - 2197195 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 2211 2197433 - 2197414 - g 90 -9.2 -4.54301 | GAAAAAATCAACAAA TGCGCGCC GGGT GGCGAGCA GGTGATGCTGAAACT YpsIP31758_1895 2197195 - 2197818 + | electron transport complex protein RnfB TERM 2212 2198186 - 2198174 - g 71 -9.1 -3.61398 | CGCTGGCGTGAACAA CAGCC GTG GGCTG ACTATCGCCAGCGCG TERM 2213 2198810 - 2198780 - g 76 -9.8 -3.6682 | opp_overlap 2198805 CTGTATTTACTTAAA TTGGCCGGTTTCAA GCC TCAAAACCCGCCAA TGGTGATTATGGGGG YpsIP31758_1896 2197811 - 2199907 + | electron transport complex protein RnfC YpsIP31758_1897 2200905 - 2200012 - | AraC family transcriptional regulator TERM 2214 2200595 - 2200617 + g 93 -8.4 -5.03314 | overlap 2200597 TTCATCTGGCGGAAG CTGTTTGGTG TCA CGCCAAACCG TTTTTTAAAGGTACG YpsIP31758_1898 2201433 - 2202488 + | electron transport complex protein RnfD YpsIP31758_1899 2202498 - 2203127 + | electron transport complex protein RnfG YpsIP31758_1900 2203124 - 2203825 + | SoxR-reducing system protein RsxE nth 2203822 - 2204463 + | endonuclease III YpsIP31758_1902 2205644 - 2204646 - | NAD dependent epimerase/dehydratase family protein TERM 2215 2205164 - 2205182 + g 73 -4.6 -4.66609 | opp_overlap 2205164 2205168 GGCTGTAATCAGACA GCAATAAA TCG TTTAATGC TTTTTGCGTACCATA YpsIP31758_1903 2206992 - 2205682 - | major facilitator transporter TERM 2216 2206907 - 2206936 + g 83 -6.5 -4.95547 | gap 1, opp_overlap 2206894 2206910, overlap 2206910 ATCAGTAGCGGCAAG AGATGCCATACCGT TTT ACGGTA-GGCATTA TTTTCTTCTTGTAAC TERM 2217 2206933 - 2206910 - G 72 -10.4 -3.08073 | gap 1, opp_overlap 2206910 2206907, overlap 2206894 AGTAGCGGCAAGAGA TGCCATACCGT TTT ACGGTA-GGCA TTATTTTCTTCTTGT TERM 2218 2206910 - 2206933 + g 100 -10.4 -4.55653 | gap 1, opp_overlap 2206894 2206910, overlap 2206907 AGTAGCGGCAAGAGA TGCCATACCGT TTT ACGGTA-GGCA TTATTTTCTTCTTGT TERM 2219 2207873 - 2207883 + G 73 -3.2 -4.86033 | CTGAACCTGAAACAT TGGT TGA GCCA TTTTTATCCCGCTTT TERM 2220 2208066 - 2208055 - g 73 -7.2 -4.2828 | opp_overlap 2208055 CGCCACCCATTAAAA GGCG ACCG CGCC TTTCAGGCTGACCTA rnb 2207641 - 2209575 + | exoribonuclease II TERM 2221 2209629 - 2209594 - f 71 -9.6 -3.03124 | opp_overlap 2209599, overlap 2209599 TCTTATGTTTTAACA TGATAGCCGTCGGAGG AATT CCCCCGACGGCTTTTT TAATGTTATGTTTGC TERM 2222 2209599 - 2209624 + F 100 -16.1 -5.30189 | opp_overlap 2209594 2209599 TGTTTTAACATGATA GCCGTCGGAGG AATT CCCCCGACGGC TTTTTTAATGTTATG TERM 2223 2209624 - 2209599 - f 100 -18.3 -2.9155 | opp_overlap 2209599, overlap 2209594 TGTTTTAACATGATA GCCGTCGGAGG AATT CCCCCGACGGC TTTTTTAATGTTATG TERM 2224 2211735 - 2211725 - g 75 -5.4 -4.74132 | opp_overlap 2211725 ATATTCCATGAAAAA CCAA GTA TTGG CTTCCTTGCTCAAGC YpsIP31758_1905 2209925 - 2211991 + | carbon starvation protein CstA YpsIP31758_1907 2211984 - 2212289 + | hypothetical protein YpsIP31758_1906 2212399 - 2212286 - | hypothetical protein TERM 2225 2212320 - 2212350 + g 100 -13.5 -4.18506 | overlap 2212323 2212343 AAATTAGTGACACCG TAACGCCCTATAG TGATT TTATAGGGCGTTA TTCTTTTACCGCTCA TERM 2226 2212323 - 2212347 + g 87 -10.8 -4.20868 | overlap 2212320 2212343 TTAGTGACACCGTAA CGCCCTATAG TGATT TTATAGGGCG TTATTCTTTTACCGC TERM 2227 2212368 - 2212382 + g 80 -4.3 -5.32599 | CTTTTACCGCTCATT GTTAC TGTCT GTAAC TTTTTATCTTTTATC YpsIP31758_1908 2213071 - 2212406 - | fructose-6-phosphate aldolase YpsIP31758_1909 2213405 - 2213653 + | hypothetical protein TERM 2228 2213660 - 2213639 - T 70 -5.1 -4.56597 | CTCTGGCTGGAAAAA CCCGTGC AAGACTGA ACACGGG CTCATTATTTATGTT araD1 2214377 - 2213682 - | L-ribulose-5-phosphate 4-epimerase YpsIP31758_1911 2214857 - 2215072 + | lipoprotein TERM 2229 2215284 - 2215321 + T 95 -13.8 -2.87132 | gap 1, opp_overlap 2215284 2215289, overlap 2215289 ATTAGAAGTTCTAAA TAAAATACGGCGTTTGA CAATA TCA-ACGCCGTATTTTA TATCTGCGCGGAAAA TERM 2230 2215321 - 2215284 - T 100 -14.5 -3.62859 | gap 1, opp_overlap 2215284 2215289, overlap 2215289 ATTAGAAGTTCTAAA TAAAATACGGCGTTTGAC AAT ATCA-ACGCCGTATTTTA TATCTGCGCGGAAAA TERM 2231 2215316 - 2215289 - T 100 -10 -4.88405 | gap 1, opp_overlap 2215289 2215284, overlap 2215284 AAGTTCTAAATAAAA TACGGCGTTTGAC AAT ATCA-ACGCCGTA TTTTATATCTGCGCG TERM 2232 2215289 - 2215316 + T 100 -9.3 -4.60797 | gap 1, opp_overlap 2215284 2215289, overlap 2215284 AAGTTCTAAATAAAA TACGGCGTTTGA CAATA TCA-ACGCCGTA TTTTATATCTGCGCG YpsIP31758_1912 2215678 - 2215352 - | translation initiation factor Sui1 pyrF 2216415 - 2215678 - | orotidine 5'-phosphate decarboxylase YpsIP31758_1914 2216885 - 2217184 + | hypothetical protein TERM 2233 2217219 - 2217238 + T 71 -10 -2.63073 | opp_overlap 2217218 2217219, overlap 2217218 2217216 ACAACAGCTAACAAC CGGGTGGA CCCG TTCACCCG ATCTTATTAGCAAAG YpsIP31758_1915 2218475 - 2217306 - | hypothetical protein TERM 2234 2217548 - 2217526 - G 74 -4.1 -4.95758 | gap 1, opp_overlap 2217528 2217544, overlap 2217517 2217527 2217528 ATTAGACGATAAAAA CCGCG-CATC GTTG GATGGCGCTG TAATTGGCGGTTAAT TERM 2235 2217850 - 2217860 + g 73 -2.4 -5.08824 | overlap 2217849 GCACATTGTTTATCC GCCG TTG CCGC TTTTTTCAGTAACCC YpsIP31758_1916 2218793 - 2218482 - | hypothetical protein YpsIP31758_1917 2219735 - 2218974 - | phosphatidylglycerophosphatase B YpsIP31758_1918 2220021 - 2219866 - | hypothetical protein TERM 2236 2220718 - 2220702 - g 71 -4.3 -4.70626 | overlap 2220693 2220690 CAACAACCCTAAAAA GGTCGAG ATC CTCACCC AAGCGGGGATCAATA ribA 2220241 - 2220831 + | GTP cyclohydrolase II TERM 2237 2220889 - 2220863 - T 91 -10.2 -4.16033 | opp_overlap 2220863 GCGAAATAAGAATAA GGGTAGGTTCAA TAA TTATACCTACCC TTTAGAGGCTGATAA acnA 2223667 - 2220995 - | aconitate hydratase TERM 2238 2223595 - 2223577 - G 79 -11.7 -3.11768 | opp_overlap 2223575 TGATATCACCCAACA CTGCCGC CAATT GCGGCAG GCTATAGTAGTCATA YpsIP31758_1921 2224882 - 2224031 - | hypothetical protein cysB 2226193 - 2225219 - | transcriptional regulator CysB TERM 2239 2226529 - 2226513 - R 100 -9.4 -5.46657 | opp_overlap 2226513 2226512 TAGCCCAATAAAAAA CCAGCC GCGAA GGCTGG CTTTACCGAGGTCAG topA 2229205 - 2226590 - | DNA topoisomerase I TERM 2240 2228266 - 2228277 + g 83 -4.4 -5.40072 | CATACAGGCGCTGTG CCAT CATC ATGG TTTTTTTCACACCAA TERM 2241 2228980 - 2228996 + g 77 -6.5 -4.55446 | GATCGACCCCCATAC GGTTGAC TAA GGCAACC TTTTCGTCTTTCTTC TERM 2242 2229228 - 2229242 + H 80 -5 -5.13344 | overlap 2229229 TTTACCTAAATTATT TCTTCT AAA AGAAGG TTTTTATCTTGCTGT YpsIP31758_1924 2229624 - 2229875 + | hypothetical protein TERM 2243 2229931 - 2229962 + T 73 -7.3 -4.18488 | opp_overlap 2229930 2229932, overlap 2229932 GGGTTGGTAGCAAAT AGCAGGGGGTA CCGTTCAGAT TACCCCCTGCA TTTATTGCCATCACT TERM 2244 2229932 - 2229961 + T 79 -10.8 -3.10611 | opp_overlap 2229930 2229932, overlap 2229931 GGTTGGTAGCAAATA GCAGGGGGTA CCGTTCAGAT TACCCCCTGC ATTTATTGCCATCAC TERM 2245 2229961 - 2229932 - T 83 -10.8 -3.44848 | gap 1, opp_overlap 2229932 2229931, overlap 2229930 GGTTGGTAGCAAATA GCAGGGGGT-ACC GTTCA GATTACCCCCTGC ATTTATTGCCATCAC YpsIP31758_1925 2231040 - 2229994 - | putative periplasmic protease TERM 2246 2230517 - 2230505 - G 77 -10.5 -3.54951 | opp_overlap 2230502, overlap 2230492 CAGGCCATCATATAA CCGCC ACT GGCGG CAACTTTATCAACCG TERM 2247 2230702 - 2230667 - G 90 -12.8 -3.67 | gap 1, overlap 2230665 2230670 GCAACGGCCAAAATA GCA-GAGATCTCTTCAC GTA ATGAAGAGACCTCCTGC GCCCCAATGCTCCCT TERM 2248 2230698 - 2230670 - G 86 -13.3 -2.93891 | overlap 2230667 2230665 ACGGCCAAAATAGCA GAGATCTCTTCAC GTA ATGAAGAGACCTC CTGCGCCCCAATGCT TERM 2249 2231829 - 2231816 - g 75 -8.1 -4.21439 | overlap 2231804 GAACCCGAACACAAA TGCGG GCGA CCGCA TTCCCCGATGAAGAT YpsIP31758_1926 2231212 - 2231973 + | short chain dehydrogenase cobO 2231990 - 2232580 + | cob(I)yrinic acid a,c-diamide adenosyltransferase TERM 2250 2232638 - 2232601 - T 75 -5.7 -4.63542 | gap 1, opp_overlap 2232601 2232601, overlap 2232604 TATAAGCGTTAAAAA TA-ATATTGCCGCAGTCC AAA AAACTGCGGCAATAAGCA TTATTCACGTCGCTA TERM 2251 2232634 - 2232604 - T 100 -15.6 -4.42235 | opp_overlap 2232601 2232601, overlap 2232601 AAGCGTTAAAAATAA TATTGCCGCAGTCC AAA AAACTGCGGCAATA AGCATTATTCACGTC rluB 2233659 - 2232703 - | 23S rRNA pseudouridylate synthase B TERM 2252 2232971 - 2232993 + g 71 -9 -3.55801 | TTAAGATCCAGTTCA GTCCAGCCAC CCC GTGGCAGGCC TTTCGGCAAATTAAT TERM 2253 2233888 - 2233903 + r 83 -9 -4.16681 | ACTGGCACACACACT TGTCCG TGGC CGGACA TTTTACACTAATATT YpsIP31758_1929 2234687 - 2234067 - | hypothetical protein YpsIP31758_1930 2235603 - 2234704 - | phosphotransferase domain-containing protein trpL 2235874 - 2235936 + | trp operon leader peptide TERM 2254 2235976 - 2235990 + F 100 -11.4 -5.64274 | TGCAGATTGCTTCAG CCCGCT AAT AGCGGG TTTTTTTATGGATAG trpE 2236052 - 2237617 + | anthranilate synthase component I trpG 2237617 - 2238195 + | anthranilate synthase component II TERM 2255 2239034 - 2239016 - g 73 -5.2 -4.63932 | opp_overlap 2239016 TATGCCGGAAGAAAA CCGTGACA TTT TAGCACGG TTGTTACAAGGTAAA trpD 2238207 - 2239208 + | anthranilate phosphoribosyltransferase trpC 2239212 - 2240639 + | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase trpB 2240774 - 2241964 + | tryptophan synthase subunit beta TERM 2256 2242644 - 2242627 - g 80 -8.3 -4.4078 | opp_overlap 2242628 2242643 CCCGCGCAAGTAAAA GCCAGCC TGGC GGCGGGC GCGGCGGGTGCTATT trpA 2241964 - 2242770 + | tryptophan synthase subunit alpha TERM 2257 2242764 - 2242753 - f 72 -7.2 -3.91196 | opp_overlap 2242753 GTCACAGAGATGAAA GCGG CAAC CCGC AGCTAGTTATTATTT TERM 2258 2242859 - 2242891 + G 73 -7.8 -4.13343 | overlap 2242861 GTCATTACCGCCCTT CAGCGCCTGTTT GTTTACATG AAACAGGCGCTA TTTTCAGCCATTTCT TERM 2259 2242861 - 2242889 + G 79 -10.4 -3.65832 | overlap 2242859 CATTACCGCCCTTCA GCGCCTGTTT GTTTACATG AAACAGGCGC TATTTTCAGCCATTT YpsIP31758_1938 2242784 - 2242933 + | hypothetical protein YpsIP31758_1939 2243113 - 2243427 + | phospholipid-binding domain-containing protein TERM 2260 2243464 - 2243432 - T 100 -10.6 -5.30155 | gap 1, opp_overlap 2243437, overlap 2243435 2243437 TGATTAAGTAAAAAA CAG-GAGGAGGCGCA TAAT CGCGCCTCCTTACTG CCCGCCTAACTGATG TERM 2261 2243460 - 2243435 - T 79 -11.1 -3.14982 | opp_overlap 2243437, overlap 2243432 2243437 TTAAGTAAAAAACAG GAGGAGGCGCA TAAT CGCGCCTCCTT ACTGCCCGCCTAACT TERM 2262 2243458 - 2243437 - T 100 -13.7 -3.11487 | opp_overlap 2243437, overlap 2243435 2243432 AAGTAAAAAACAGGA GGAGGCGCA TAAT CGCGCCTCC TTACTGCCCGCCTAA TERM 2263 2243437 - 2243458 + T 95 -13 -3.14564 | opp_overlap 2243435 2243432 2243437 AAGTAAAAAACAGGA GGAGGCGC ATAATC GCGCCTCC TTACTGCCCGCCTAA YpsIP31758_1940 2244209 - 2243574 - | outer membrane protein W TERM 2264 2244216 - 2244264 + r 100 -13.6 -4.03078 | gap 1, overlap 2244218 2244218 TTTTTTCATTATCCA TTC-CATTTGTAGGTATATTTAC GGGG GTGAATATACCTACAAATGAGTA TTTGTGATCTAATCG TERM 2265 2244218 - 2244261 + r 100 -16.4 -2.7558 | overlap 2244218 2244216 TTTTCATTATCCATT CCATTTGTAGGTATATTTAC GGGG GTGAATATACCTACAAATGA GTATTTGTGATCTAA TERM 2266 2244218 - 2244262 + r 100 -16.2 -3.60505 | gap 1, overlap 2244216 2244218 TTTTCATTATCCATT C-CATTTGTAGGTATATTTAC GGGG GTGAATATACCTACAAATGAG TATTTGTGATCTAAT TERM 2267 2244267 - 2244287 + r 73 -8.4 -3.57715 | CTACAAATGAGTATT TGTGATCT AATCG AGATCACA TCTTTCGTATCTTTT YpsIP31758_1941 2244533 - 2244318 - | hypothetical protein YpsIP31758_1942 2244695 - 2245465 + | hypothetical protein TERM 2268 2245540 - 2245518 - T 100 -16.4 -4.68593 | TGTATCATTCAAAAA CGCCTGATGT ATT ACATCAGGCG TTCAAACTGTAGACA YpsIP31758_1943 2247325 - 2245586 - | sulfate permease family protein ispZ 2247556 - 2248098 + | intracellular septation protein A YpsIP31758_1945 2248178 - 2248627 + | acyl-CoA thioester hydrolase TERM 2269 2248674 - 2248657 - T 100 -14.1 -4.12603 | TTGATTAAACAAGAA GGGCCGC AAAA GCGGCCC TGAGGTTGGTGACAG tonB 2249466 - 2248696 - | transport protein TonB YpsIP31758_1947 2249767 - 2250063 + | YciI-like protein YpsIP31758_1948 2250301 - 2250546 + | hypothetical protein TERM 2270 2250579 - 2250618 + T 100 -11 -6.15536 | opp_overlap 2250581 2250583 2250586 2250589, overlap 2250580 2250581 CGGTTGTAGACACTA GATATAATAATACGCCTA AAGC TAGGCGTATTATTATAAG TTTTTTTTGTTAATT TERM 2271 2250580 - 2250617 + T 100 -14.5 -4.25661 | opp_overlap 2250581 2250583 2250586 2250589, overlap 2250579 2250581 GGTTGTAGACACTAG ATATAATAATACGCCTA AAGC TAGGCGTATTATTATAA GTTTTTTTTGTTAAT TERM 2272 2250581 - 2250616 + T 100 -18 -3.12957 | opp_overlap 2250581 2250583 2250586 2250589, overlap 2250580 2250579 GTTGTAGACACTAGA TATAATAATACGCCTA AAGC TAGGCGTATTATTATA AGTTTTTTTTGTTAA TERM 2273 2250616 - 2250581 - T 100 -18 -2.88999 | opp_overlap 2250581 2250580 2250579, overlap 2250583 2250586 2250589 GTTGTAGACACTAGA TATAATAATACGCCTA AAGC TAGGCGTATTATTATA AGTTTTTTTTGTTAA TERM 2274 2250614 - 2250583 - T 100 -16.2 -2.99545 | opp_overlap 2250581 2250580 2250579, overlap 2250581 2250586 2250589 TGTAGACACTAGATA TAATAATACGCCTA AAGC TAGGCGTATTATTA TAAGTTTTTTTTGTT TERM 2275 2250611 - 2250586 - T 100 -13.5 -3.63762 | opp_overlap 2250581 2250580 2250579, overlap 2250583 2250581 2250589 AGACACTAGATATAA TAATACGCCTA AAGC TAGGCGTATTA TTATAAGTTTTTTTT TERM 2276 2250608 - 2250589 - T 90 -10.8 -3.94067 | opp_overlap 2250581 2250580 2250579, overlap 2250586 2250583 2250581 CACTAGATATAATAA TACGCCTA AAGC TAGGCGTA TTATTATAAGTTTTT YpsIP31758_1949 2250925 - 2250662 - | hypothetical protein YpsIP31758_1950 2251170 - 2251042 - | hypothetical protein YpsIP31758_1951 2251684 - 2251145 - | Ail/Lom family protein TERM 2277 2252091 - 2252075 - R 100 -8.7 -5.48213 | opp_overlap 2252074 2252077 GATTCAAAACAAAAA CAGCCTC ATA GAGACTG CCTTATTACCATAAT YpsIP31758_1952 2252253 - 2252113 - | hypothetical protein TERM 2278 2252512 - 2252486 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 2252495, overlap 2252487 2252502 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2279 2252513 - 2252487 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 2252495, overlap 2252486 2252502 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT cls 2252731 - 2254191 + | cardiolipin synthetase YpsIP31758_1954 2254356 - 2254679 + | dsDNA-mimic protein TERM 2280 2254737 - 2254705 - T 71 -9.1 -3.31416 | opp_overlap 2254705 2254706, overlap 2254708 AAAATAAAGAGTTAA TCATTGCCCCATAGT TCA ACCCCGGGGCAATGT ATCTTAATTATCCTT TERM 2281 2254734 - 2254708 - T 70 -9.4 -2.8084 | opp_overlap 2254706 2254705, overlap 2254705 ATAAAGAGTTAATCA TTGCCCCATAGT TCA ACCCCGGGGCAA TGTATCTTAATTATC TERM 2282 2254886 - 2254853 - T 100 -16.9 -3.80114 | overlap 2254854 CAGCAATCGAGTAAA TCCTCAGTCACTTAG ATAA CTAAGTGACTGAGGT GAGCAAGAGCAGCTA TERM 2283 2254885 - 2254854 - T 100 -20.4 -2.87586 | overlap 2254853 AGCAATCGAGTAAAT CCTCAGTCACTTAG ATAA CTAAGTGACTGAGG TGAGCAAGAGCAGCT YpsIP31758_1955 2255193 - 2254978 - | hypothetical protein TERM 2284 2255293 - 2255277 - R 82 -4.5 -5.39905 | opp_overlap 2255272 2255277 2255286 ATTAAATAACAAAAA CACATTA ACT TAATATG TTTTAATTCGTCAAT oppF 2256765 - 2255764 - | oligopeptide ABC transporter, ATP-binding protein OppF TERM 2285 2255803 - 2255793 - G 73 -8.2 -3.794 | CTTTAAGGCACGAAA CCGC GTG GCGG AAACTCCCTTCTAAT oppD 2257763 - 2256762 - | oligopeptide transporter ATP-binding component TERM 2286 2256988 - 2256976 - G 71 -6.3 -4.20783 | ACGGCATTCAATAAA CCTAT CGA ATAGG GGTGGCTTGGATGAT oppC 2258680 - 2257775 - | oligopeptide ABC transporter, permease protein OppC oppB 2259619 - 2258699 - | oligopeptide transporter permease TERM 2287 2259210 - 2259192 - G 71 -3.1 -4.92757 | overlap 2259194 GGAGCAACAACAAAA CTGGG TATGACGAC CCCAG TCATCGCAAAACCCA oppA 2261343 - 2259706 - | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein YpsIP31758_1961 2261315 - 2261494 + | hypothetical protein TERM 2288 2261755 - 2261768 + Tr 73 -2.5 -5.24531 | ATAACATATTGAATT TATTT ACTA AAATA TTTTTTATGCAGAAT TERM 2289 2262160 - 2262125 - TR 80 -2.6 -5.49809 | gap 1, overlap 2262126 CAAAGCGGAAAAAAA GGAGAAGGCCACCAA GAATAGT TCAGTGGCCT-CTCG AAAATTCTGAATGGT YpsIP31758_1962 2262825 - 2262181 - | hypothetical protein TERM 2290 2262865 - 2262855 - H 74 -4 -5.08088 | overlap 2262858 AATTGCTAATAAAAA TATC ACC GATA ACAGTGCATTATAAC TERM 2291 2264138 - 2264104 - g 80 -8.7 -4.33621 | gap 2, opp_overlap 2264125 2264126, overlap 2264091 GACGCAACCAATAAA GCTGCGGATATCGTGCT TCA AGC-CGCTATC-GCAGC AGGTGCGCCAGCGGA TERM 2292 2265451 - 2265416 - g 78 -9.1 -4.10007 | opp_overlap 2265427, overlap 2265427 ATAAGTTCCCGAAAA TGGGTGTAAAAGCGA AATTGG TCGCTATTACAACCA CATCAGGTACCGGTT adhE 2263660 - 2266335 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 2293 2266426 - 2266385 - T 86 -6 -5.27477 | gap 2, opp_overlap 2266393, overlap 2266386 2266393 AGGGTAAGCAAAAAA TGATATAACCCCCGATGAGC AGCC GCTGATCGGGGGTT-T-TCT TTTACAGACCAATTA TERM 2294 2266425 - 2266386 - T 81 -9.5 -3.75402 | gap 2, opp_overlap 2266393, overlap 2266385 2266393 GGGTAAGCAAAAAAT GATATAACCCCCGATGAGC AGCC GCTGATCGGGGGTT-T-TC TTTTACAGACCAATT TERM 2295 2266420 - 2266393 - T 100 -15.6 -3.74447 | opp_overlap 2266393, overlap 2266386 2266385 CAAAAAATGATATAA CCCCCGATGAGC AGCC GCTGATCGGGGG TTTTCTTTTACAGAC TERM 2296 2266393 - 2266420 + T 100 -15.6 -5.07652 | opp_overlap 2266386 2266385 2266393 CAAAAAATGATATAA CCCCCGATGAGC AGCC GCTGATCGGGGG TTTTCTTTTACAGAC tdk 2267676 - 2267086 - | thymidine kinase YpsIP31758_1965 2268033 - 2268170 + | hypothetical protein TERM 2297 2268709 - 2268687 - g 77 -10.6 -3.5394 | overlap 2268676 2268693 AAAGCTGCTGGTAAA GCAAAACGTG CTG CACGTCCTGC TAAATATCAGTATAA TERM 2298 2268703 - 2268693 - g 77 -6.8 -4.54727 | overlap 2268687 GCTGGTAAAGCAAAA CGTG CTG CACG TCCTGCTAAATATCA hns 2268426 - 2268833 + | global DNA-binding transcriptional dual regulator H-NS TERM 2299 2268889 - 2268866 - f 100 -15.4 -3.69323 | opp_overlap 2268866, overlap 2268880 2268885 CTATTACTATCGAAA CACCCTCCTA TTAA TAGGAGGGTG TTTTTTGTGCCCAGA TERM 2300 2268866 - 2268889 + F 100 -15.4 -5.24129 | opp_overlap 2268866 2268880 2268885 CTATTACTATCGAAA CACCCTCCTA TTAA TAGGAGGGTG TTTTTTGTGCCCAGA TERM 2301 2268908 - 2268926 + F 100 -16 -3.07307 | opp_overlap 2268885 2268880 2268908 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2302 2268926 - 2268908 - f 100 -16 -4.36914 | opp_overlap 2268908, overlap 2268885 2268880 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_1967 2268988 - 2269497 + | IS1541, transposase TERM 2303 2269571 - 2269603 + T 100 -11.3 -4.42594 | opp_overlap 2269578, overlap 2269575 2269577 2269578 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTGTCTTTCATTTA TERM 2304 2269575 - 2269599 + T 100 -9.9 -4.73432 | opp_overlap 2269578, overlap 2269571 2269577 2269578 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTGTCTTTCA TERM 2305 2269577 - 2269597 + T 100 -12.5 -3.95749 | opp_overlap 2269578, overlap 2269575 2269571 2269578 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTGTCTTT TERM 2306 2269578 - 2269596 + T 100 -16 -2.95009 | opp_overlap 2269578, overlap 2269577 2269575 2269571 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTCTT TERM 2307 2269596 - 2269578 - T 100 -16 -4.8048 | opp_overlap 2269578 2269577 2269575 2269571 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTGTCTT YpsIP31758_1968 2271324 - 2269978 - | UDP-glucose/GDP-mannose dehydrogenase family protein YpsIP31758_1969 2272647 - 2271631 - | response regulator of RpoS TERM 2308 2273452 - 2273432 - H 95 -7.6 -4.9138 | opp_overlap 2273434 AGTACGCAAACAAAA TAACCACC ATAAA GGTGGCTA TTCAGCGTAAACATT YpsIP31758_1970 2273981 - 2274445 + | hypothetical protein purU 2274529 - 2275377 + | formyltetrahydrofolate deformylase YpsIP31758_1974 2276781 - 2275921 - | LysR family transcriptional regulator TERM 2309 2276236 - 2276261 + g 71 -7.1 -4.03137 | gap 1, opp_overlap 2276244 TAACCAAACATTACT GTGAAGAATATT TAT AATAT-CTTCAC TTTCATTAATTATAT TERM 2310 2276628 - 2276640 + g 87 -6.3 -5.17054 | TCATGCCAAATTTCT CTCTT TTA AAGAG TTTTTTCCCTATTAT YpsIP31758_1975 2277281 - 2277153 - | hypothetical protein TERM 2311 2277738 - 2277750 + G 75 -3.3 -5.0538 | GAAGACGTCAGCCAG CATGG TTA CCACG TTTTTTACCATGGGC TERM 2312 2277816 - 2277804 - g 78 -9.1 -4.015 | CTATTGACGAAAGAA CAGCC ACT GGCTG TGCGCCGAGGTTTCC xth 2277591 - 2278397 + | exonuclease III nudG 2278495 - 2278881 + | pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YpsIP31758_1978 2279184 - 2278894 - | hypothetical protein topB 2281106 - 2279181 - | DNA topoisomerase III selD 2282214 - 2281168 - | selenophosphate synthetase TERM 2313 2282024 - 2282012 - G 89 -3.4 -5.61596 | ATCGGCATAAAAAAA TCAG TCGTG CTGA TAATGCCAACACCGT YpsIP31758_1981 2282990 - 2282439 - | hypothetical protein sppA 2283153 - 2285003 + | protease 4 TERM 2314 2285054 - 2285031 - f 77 -11 -2.80789 | opp_overlap 2285032, overlap 2285030 2285028 AATACAGATAAATAT TCAGCCCGAT ACCC ATCGGGCTGT TTTTCCTCGCTGAGC TERM 2315 2285032 - 2285053 + F 100 -14.5 -4.7497 | opp_overlap 2285031 2285030 2285028 ATACAGATAAATATT CAGCCCGAT ACCC ATCGGGCTG TTTTTCCTCGCTGAG ansA 2285120 - 2286136 + | cytoplasmic asparaginase I TERM 2316 2286795 - 2286770 - g 71 -10.5 -2.76696 | gap 1, opp_overlap 2286787, overlap 2286769 TGGCTCTTGAACAAT GCCTGGCTGAAG TCG CTTCAGCC-GAC TGATCGCTTTCTGCG pncA 2286151 - 2286798 + | nicotinamidase/pyrazinamidase TERM 2317 2286817 - 2286838 + T 95 -7.2 -5.47159 | opp_overlap 2286817 2286819, overlap 2286819 CTTTCTGCGCAAAAA TTGGCGCC TGCCTC GGCGCCCA TTTTTTGTATTCAGA TERM 2318 2286838 - 2286817 - T 78 -7.2 -4.56597 | opp_overlap 2286817 2286819, overlap 2286819 CTTTCTGCGCAAAAA TTGGCGCC TGCCTC GGCGCCCA TTTTTTGTATTCAGA TERM 2319 2286819 - 2286836 + T 73 -9.8 -2.91242 | opp_overlap 2286817 2286819, overlap 2286817 TTCTGCGCAAAAATT GGCGCC TGCCTC GGCGCC CATTTTTTGTATTCA TERM 2320 2286836 - 2286819 - T 71 -9.8 -2.60032 | opp_overlap 2286819 2286817, overlap 2286817 TTCTGCGCAAAAATT GGCGCC TGCCTC GGCGCC CATTTTTTGTATTCA YpsIP31758_1985 2287204 - 2286932 - | hypothetical protein msrB 2287688 - 2287275 - | methionine sulfoxide reductase B TERM 2321 2287768 - 2287750 - H 82 -2.4 -5.70522 | AATAATAACAAAAAA TTAACAAC AAA GCAGTTAA AATTGTCCTAAACTG gapA 2288036 - 2289031 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2322 2289058 - 2289075 + T 100 -11.3 -5.05116 | opp_overlap 2289058 AGATTTCTACCTAAA GCCACTC ACGC GAGTGGC TTTTCTTGTTTATAG TERM 2323 2289075 - 2289058 - T 90 -11.3 -3.65529 | opp_overlap 2289058 AGATTTCTACCTAAA GCCACTC ACGC GAGTGGC TTTTCTTGTTTATAG YpsIP31758_1988 2289341 - 2289204 - | hypothetical protein YpsIP31758_1989 2289346 - 2290221 + | aldose 1-epimerase TERM 2324 2290248 - 2290264 + T 93 -13.7 -2.78495 | opp_overlap 2290248, overlap 2290245 2290243 CGGTCAATATAAAAA TGGGGCC TTT GGCCCCA TGGTCTTGCTCATAG TERM 2325 2290264 - 2290248 - T 100 -13.7 -5.0916 | opp_overlap 2290248 2290245 2290243 CGGTCAATATAAAAA TGGGGCC TTT GGCCCCA TGGTCTTGCTCATAG mipA 2291064 - 2290294 - | MltA-interacting protein TERM 2326 2291745 - 2291717 - g 72 -10.4 -3.01712 | opp_overlap 2291715 TCCTGCGTTTGAAGA GTTCTATGGCAT GGAGG AAGCCATAGAAC AGATTGTTTCTTATC YpsIP31758_1991 2291487 - 2293421 + | PrkA serine protein kinase TERM 2327 2293523 - 2293466 - f 74 -9.9 -3.14307 | gap 1 AGGAAGGCAAAACTA TG-CACTACGTCCTTGGCGTTGCCGC TAACCAT GCTGTAACGCCAAGGACAAAGGGACA GTGTGAGGCCGGTGG YpsIP31758_1992 2293571 - 2294845 + | hypothetical protein TERM 2328 2294857 - 2294895 + F 78 -5.3 -4.9792 | opp_overlap 2294857 TTAGCAGCAATATCA GCCGGTTAATTTTTTCT TGTTC AGAAAGCATTTTCCGGC TTTTTCTATGGGCTA TERM 2329 2295439 - 2295454 + G 71 -6.8 -4.20084 | CAATTTGCCGGATTA TGGCCG ACGC TGGCCA TTTTAGGTGCCTGCT YpsIP31758_1993 2294953 - 2296071 + | integral membrane protein YpsIP31758_1994 2297011 - 2296106 - | LysR family substrate binding transcriptional regulator TERM 2330 2297239 - 2297218 - g 80 -2.9 -5.3671 | AAGATAATGAAAAAA GTTCAAGGT ATTT ACCGTGCAC CTCGTCAACATTGGG YpsIP31758_1995 2297209 - 2298078 + | pirin family protein TERM 2331 2298104 - 2298140 + F 100 -15.4 -5.5112 | CCGCCATTACCTGTC TGCTATTACCTGTCTA CCCTC TGGGCAGGTAATAGCA TTTTTTATTGATGAG YpsIP31758_1996 2298343 - 2299536 + | Bcr/CflA subfamily drug resistance transporter TERM 2332 2299596 - 2299550 - T 83 -9.6 -3.98291 | opp_overlap 2299547, overlap 2299551 AACAACGGCAAATAA TCGCGTTACACGATATTAAC GGATGGG GTGAATATCGTGTAACGGGG CAATATTCAGTGGCT TERM 2333 2299595 - 2299551 - T 95 -13.1 -2.9789 | opp_overlap 2299547, overlap 2299550 ACAACGGCAAATAAT CGCGTTACACGATATTAAC GGATGGG GTGAATATCGTGTAACGGG GCAATATTCAGTGGC dadA 2300869 - 2299565 - | D-amino acid dehydrogenase small subunit TERM 2334 2300085 - 2300065 - G 78 -8.9 -3.97368 | overlap 2300077 CCTTCAATGGATAAA CCGGGATAG ACA CCAGCCCGG CCAGTAGCGCGGTAG TERM 2335 2301970 - 2301948 - g 74 -2.6 -5.0538 | CCGCACGCCAAAAAA GCCGTGAAGA ATA TCTACAAAGC CAAGTGAATTCCCTG YpsIP31758_1998 2301335 - 2302870 + | hypothetical protein TERM 2336 2302917 - 2302901 - T 100 -10.1 -5.04385 | GACATCGGTAAAAAA GGGGCAT TAA ACGCCCC TCAGACTGCTGACAA fadR 2303807 - 2303088 - | fatty acid metabolism regulator TERM 2337 2303420 - 2303438 + g 71 -3 -4.88736 | overlap 2303411 CCACTGTTTTCGCTC GCGCCAAA ATT TCTTGCGC TTTTTCTGGATGATG TERM 2338 2304384 - 2304395 + G 72 -5.8 -4.32857 | opp_overlap 2304384 ATCTACTTTATGAAA CAGC TGCT GCTG TTTGTATTTACGAAA TERM 2339 2304517 - 2304532 + G 75 -3.2 -5.00846 | overlap 2304518 TAATCGCGGTAGTTA TCAGCG TATC CGTTGG TTTTTATACTATTTA TERM 2340 2305215 - 2305226 + G 78 -5.8 -4.74917 | GCCTCGCCTTCCGCT CAGC TATC GCTG TTTTATCTGTTTAAT TERM 2341 2305402 - 2305414 + G 71 -4.7 -4.49316 | opp_overlap 2305403, overlap 2305403 CCGTGGCGACACCAA ACGGC CAG GCCGC TTTCTTGTTCCTGCT TERM 2342 2305413 - 2305403 - g 73 -8.2 -3.83026 | opp_overlap 2305403 2305402 CGTGGCGACACCAAA CGGC CAG GCCG CTTTCTTGTTCCTGC nhaB 2304051 - 2305625 + | sodium/proton antiporter dsbB 2305846 - 2306391 + | disulfide bond formation protein B TERM 2343 2306435 - 2306417 - T 84 -11.7 -3.21416 | opp_overlap 2306417 TATCTTTATTATCAA TGGCGCC TCTCT GGCGCCA TTTTTATATCAGATT TERM 2344 2306417 - 2306435 + T 100 -11.7 -4.98522 | opp_overlap 2306417 TATCTTTATTATCAA TGGCGCC TCTCT GGCGCCA TTTTTATATCAGATT TERM 2345 2306756 - 2306721 - T 73 -8.5 -3.66378 | opp_overlap 2306721 2306720 2306716 CAGATTGGATTGAAA TCAGATCAACAGA TTTTCCATCC CCTGTTGATCTGA GTTTCATTAGTCAAT YpsIP31758_2002 2307164 - 2306808 - | hypothetical protein TERM 2346 2307408 - 2307383 - H 70 -7.7 -3.65046 | opp_overlap 2307382 TGGCTATGTTAATAA TCATTATTCCT GCGC AGGAATAGTGA ATCTATTAAAGAAAA YpsIP31758_2003 2308256 - 2308996 + | hypothetical protein YpsIP31758_2004 2309013 - 2310212 + | aminotransferase, class V TERM 2347 2311223 - 2311239 + G 82 -5.1 -5.0925 | overlap 2311225 GACTTGGTTTGTCGT TGCCTAC TTC GTGGGTA TTTTTGGTTTTCCGC YpsIP31758_2005 2310216 - 2311388 + | major facilitator transporter TERM 2348 2311439 - 2311418 - T 78 -8.7 -3.827 | AACAATGAAGGTAAA GATGGCAGC TTAG GCTGTCATC GGCTAAAGCAATTTA YpsIP31758_2006 2311919 - 2311473 - | hypothetical protein TERM 2349 2311983 - 2312014 + r 82 -7.9 -4.45693 | overlap 2311984 2311985 CTTACAGATGCAAGT TTTGCCGCCCGAC AGTAAA GTCGGACGGCACG TTTCTCTTTATATTA TERM 2350 2311984 - 2312013 + r 74 -9.2 -3.25789 | overlap 2311983 2311985 TTACAGATGCAAGTT TTGCCGCCCGAC AGTAAA GTCGGACGGCAC GTTTCTCTTTATATT TERM 2351 2311985 - 2312012 + r 86 -12.7 -2.53847 | overlap 2311984 2311983 TACAGATGCAAGTTT TGCCGCCCGAC AGTAAA GTCGGACGGCA CGTTTCTCTTTATAT YpsIP31758_2007 2312678 - 2312022 - | hypothetical protein YpsIP31758_2008 2313837 - 2312749 - | lytic murein transglycosylase YpsIP31758_2009 2314247 - 2313975 - | hypothetical protein TERM 2352 2314742 - 2314731 - H 71 -3 -5.03145 | CAAGTGTTGAAAAAA TATG CAAT CATA AAATAGCGGCTGAGT TERM 2353 2314762 - 2314746 - H 74 -6.5 -4.55491 | TATGCAATCATAAAA TAGCGGC TGA GTCGCTA AATATAGGGGGTCAA TERM 2354 2315298 - 2315283 - g 73 -4.6 -4.70879 | overlap 2315275 2315285 GGTAAAGGCCAAAAA CTGGCT CCAG AGCCGG TCATCAGTCCGCCGG minC 2314968 - 2315654 + | septum formation inhibitor minD 2315679 - 2316491 + | cell division inhibitor MinD minE 2316495 - 2316764 + | cell division topological specificity factor MinE TERM 2355 2316776 - 2316807 + T 100 -17.5 -3.43117 | opp_overlap 2316779, overlap 2316779 ATGATTTCTTCTCAA TAACGCCCCTGTA TTTATT TACAGGGGCGTTA TTCTCAATTGACTGT TERM 2356 2316804 - 2316779 - T 100 -14.8 -3.61517 | opp_overlap 2316779 2316776 ATTTCTTCTCAATAA CGCCCCTGTA TTTATT TACAGGGGCG TTATTCTCAATTGAC TERM 2357 2316779 - 2316804 + T 100 -14.8 -3.84808 | opp_overlap 2316779, overlap 2316776 ATTTCTTCTCAATAA CGCCCCTGTA TTTATT TACAGGGGCG TTATTCTCAATTGAC TERM 2358 2316953 - 2316940 - T 73 -5.3 -4.61873 | opp_overlap 2316947 2316948, overlap 2316935 2316947 2316948 2316949 GTTCATAAATTAAAA CTGAA AAGT TTCAG CGTGGAATTAATATC TERM 2359 2316978 - 2316949 - T 70 -10.1 -2.54204 | opp_overlap 2316948 2316947 2316970, overlap 2316935 2316940 2316948 2316947 TTAAAACTGAAAAGT TTCAGCGTGGAAT TAAT ATCCCACCCTGAA GGCTGATTAATATCA rnd 2318122 - 2317001 - | ribonuclease D TERM 2360 2317187 - 2317207 + g 77 -2.6 -5.24129 | opp_overlap 2317187, overlap 2317189 GACCGATTGAATCAA GGCTTTAA TATCT TTAAAGAC TTTTTTGTACCCCGG TERM 2361 2318227 - 2318263 + r 100 -14.6 -3.767 | gap 1, opp_overlap 2318228 2318230, overlap 2318228 2318229 2318233 2318236 ATAGTTCGATAACAA ACA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATGA TTTAGTGACTCCGTC TERM 2362 2318228 - 2318262 + r 100 -18.1 -2.85699 | gap 1, opp_overlap 2318228 2318230, overlap 2318227 2318229 2318233 2318236 TAGTTCGATAACAAA CA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATG ATTTAGTGACTCCGT TERM 2363 2318262 - 2318228 - R 100 -18.1 -4.31433 | gap 1, opp_overlap 2318228 2318227 2318229 2318233 2318236, overlap 2318230 TAGTTCGATAACAAA CA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATG ATTTAGTGACTCCGT TERM 2364 2318229 - 2318260 + r 100 -17.4 -2.97667 | opp_overlap 2318228 2318230, overlap 2318228 2318227 2318233 2318236 AGTTCGATAACAAAC ACAACAACGCCGGT GATA ACCGGCGTTGTTGA TGATTTAGTGACTCC TERM 2365 2318259 - 2318230 - R 100 -20.9 -3.75817 | opp_overlap 2318229 2318228 2318227 2318233 2318236, overlap 2318228 GTTCGATAACAAACA CAACAACGCCGGT GATA ACCGGCGTTGTTG ATGATTTAGTGACTC TERM 2366 2318233 - 2318256 + r 100 -16.8 -3.34227 | opp_overlap 2318230 2318228, overlap 2318229 2318228 2318227 2318236 CGATAACAAACACAA CAACGCCGGT GATA ACCGGCGTTG TTGATGATTTAGTGA TERM 2367 2318236 - 2318253 + r 100 -12.7 -3.79909 | opp_overlap 2318230 2318228, overlap 2318233 2318229 2318228 2318227 TAACAAACACAACAA CGCCGGT GATA ACCGGCG TTGTTGATGATTTAG fadD 2319970 - 2318282 - | long-chain-fatty-acid--CoA ligase TERM 2368 2320419 - 2320402 - R 100 -12.7 -4.64844 | TGTAGATATAGAAAA GGCGCTG GACT CAGCGCC TCTGACTGCTGACAA TERM 2369 2320496 - 2320470 - R 84 -10.1 -3.79519 | gap 1, opp_overlap 2320479, overlap 2320471 2320486 AACGGTAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2370 2320497 - 2320471 - R 72 -10.1 -2.87229 | gap 1, opp_overlap 2320479, overlap 2320470 2320486 ACGGTAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2371 2320575 - 2320592 + r 100 -9.1 -4.82901 | gap 1 TTGTCAATAACCTCA GGCGCTGG ACT CC-GCGCC TTTTTGTGGCCCAAA YpsIP31758_2015 2321200 - 2320613 - | Slp family outer membrane lipoprotein YpsIP31758_2016 2322053 - 2321355 - | family M22 nonpeptidase-like protein YpsIP31758_2017 2324029 - 2322125 - | hypothetical protein TERM 2372 2322854 - 2322865 + g 78 -5.8 -4.7497 | opp_overlap 2322853 2322854 CGCTGAGGTGAAAAT CCAG GTGC CTGG TTTTTCCTCAATCAA TERM 2373 2323451 - 2323432 - G 100 -10 -4.82901 | opp_overlap 2323420 TGTCCGCCAGAAAAA GATGGTGG TTTA CCACCACC ACATCAGCATCCATC TERM 2374 2323467 - 2323480 + g 74 -9.5 -3.53012 | ACATCAGCATCCATC GCCCG ACGA CGGGC TTTCACCACAAAACA YpsIP31758_2018 2324160 - 2324504 + | endoribonuclease L-PSP TERM 2375 2324589 - 2324616 + T 70 -9.8 -2.52015 | opp_overlap 2324590, overlap 2324588 AAGCCACAAAAACAA AGGAGAGTAGCC GCCA GGCTACCCTCCG CTTACTGCCTCTGGC TERM 2376 2324615 - 2324590 - T 100 -15.5 -4.97405 | opp_overlap 2324589 2324588 AGCCACAAAAACAAA GGAGAGTAGCC GCCA GGCTACCCTCC GCTTACTGCCTCTGG mdtI 2324965 - 2324636 - | multidrug efflux system protein MdtI mdtJ 2325395 - 2324952 - | multidrug resistance protein MdtJ TERM 2377 2326030 - 2326004 - R 100 -11.6 -5.03314 | opp_overlap 2326002 2326008 2326009 2326020, overlap 2326009 GTGATTCTGAAAAAA CAAAACCCCTGC AAT GCAGAGGCTCTG TCTTTGGTGAAAATA TERM 2378 2326025 - 2326009 - R 100 -10.1 -5.42198 | opp_overlap 2326009 2326008 2326002 2326020, overlap 2326004 TCTGAAAAAACAAAA CCCCTGC AAT GCAGAGG CTCTGTCTTTGGTGA eda 2326724 - 2326083 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 2379 2326912 - 2326947 + r 78 -9.7 -3.42574 | overlap 2326914 2326915 TGCTCTCCCTGGCAG TCACGCGCCATCAGA TTCGCC TCTGGTGGCGCGCTA TTATCGTGCGGTTAG TERM 2380 2326914 - 2326945 + r 95 -12.3 -3.28219 | overlap 2326912 2326915 CTCTCCCTGGCAGTC ACGCGCCATCAGA TTCGCC TCTGGTGGCGCGC TATTATCGTGCGGTT TERM 2381 2326915 - 2326944 + r 100 -15.8 -2.56449 | overlap 2326914 2326912 TCTCCCTGGCAGTCA CGCGCCATCAGA TTCGCC TCTGGTGGCGCG CTATTATCGTGCGGT zwf 2328450 - 2326966 - | glucose-6-phosphate 1-dehydrogenase YpsIP31758_2023 2328803 - 2329672 + | DNA-binding transcriptional regulator HexR TERM 2382 2330856 - 2330806 - g 71 -3.9 -4.68908 | gap 1, overlap 2330832 GGTATCCAAAAGAAA CTGATCCGCCGTGCCCGCCAGC TAAACCGT GCCGT-GATCACGGCGACTCAG ATGATGGAGTCAATG pykA 2330002 - 2331444 + | pyruvate kinase TERM 2383 2331500 - 2331469 - T 100 -10.8 -4.46757 | overlap 2331474 AAGATAGGCAGAAAA GCAAAGGCCCGCTA TCAC TAGCGGGCCTCAGA CTGCTGACAAACCCC TERM 2384 2331495 - 2331474 - T 100 -15.9 -4.27483 | overlap 2331469 AGGCAGAAAAGCAAA GGCCCGCTA TCAC TAGCGGGCC TCAGACTGCTGACAA TERM 2385 2331584 - 2331558 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2331567, overlap 2331559 2331574 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2386 2331585 - 2331559 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2331567, overlap 2331558 2331574 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2387 2331663 - 2331684 + T 100 -15.9 -4.36595 | opp_overlap 2331659 2331658 TTGTCAATAACCTCA GGCCCGCTA TCAC TAGCGGGCC TTTTACCTTTAACTG msbB 2332746 - 2331784 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2388 2332973 - 2332939 - R 100 -15.2 -3.74077 | overlap 2332944 GCTGACAGACTGAAA CTAAACTGCCAGTG CTCAACT CACTGGCAGCTTAG GGATAAACACACCGA TERM 2389 2332968 - 2332944 - R 100 -11.5 -4.09556 | overlap 2332939 CAGACTGAAACTAAA CTGCCAGTG CTCAACT CACTGGCAG CTTAGGGATAAACAC TERM 2390 2333006 - 2332983 - R 73 -8.8 -3.5511 | overlap 2332981 2332985 GCTTAGGGATAAACA CACCGACAGG CTAA CCTGACGGTA TCACTGCTAATCCAG TERM 2391 2333004 - 2332985 - R 74 -9.2 -3.34988 | overlap 2332983 2332981 TTAGGGATAAACACA CCGACAGG CTAA CCTGACGG TATCACTGCTAATCC YpsIP31758_2026 2334329 - 2333013 - | hypothetical protein TERM 2392 2334237 - 2334217 - G 83 -8.2 -4.60797 | GGGTGATAGATAAAA GGCCGCCA AACAG CGACGGCC AGTGTCATTACAGTC TERM 2393 2334281 - 2334255 - G 73 -10.1 -3.14468 | TGTCATTACAGTCAA CGACCCCAACA TGATG CGATGGGGTCG AGGAAGATTGTTATA znuA 2335306 - 2334350 - | high-affinity zinc transporter periplasmic component TERM 2394 2335692 - 2335676 - g 74 -4.3 -5.00616 | opp_overlap 2335684 CCGGGGGTGAAAAAA GCCGACA TTC TGCCTGC ACTCACACGGGTGCA znuC 2335379 - 2336140 + | high-affinity zinc transporter ATPase TERM 2395 2336194 - 2336207 + G 75 -5.9 -4.61566 | CTGGCAACAGCCGCT GGCCC GTTG GGGTC TTTTGTCGTTTGGCG znuB 2336137 - 2336922 + | high-affinity zinc transporter membrane component ruvB 2337982 - 2336978 - | Holliday junction DNA helicase B ruvA 2338759 - 2338145 - | Holliday junction DNA helicase motor protein TERM 2396 2338389 - 2338403 + g 73 -5.6 -4.56597 | opp_overlap 2338391, overlap 2338391 TTCATTTCGACCACT AACCGC TCG GCGGTC TTTTTACCGACACCC TERM 2397 2338391 - 2338401 + g 73 -8.2 -3.90048 | opp_overlap 2338391, overlap 2338389 CATTTCGACCACTAA CCGC TCG GCGG TCTTTTTACCGACAC TERM 2398 2338706 - 2338723 + g 77 -6.3 -4.58663 | gap 1 ACCGTTTGTTTCCAG CAG-CACC AGC GGTGGCTG TTTTTCCAGAATGAT TERM 2399 2339027 - 2339008 - R 100 -12.2 -5.34555 | opp_overlap 2339008, overlap 2338984 TTATAGCATAAAAAA GGCTGGAT GGAT ATCCAGCC TGTGATAACAGTTAA TERM 2400 2339008 - 2339027 + r 83 -12.2 -2.79831 | opp_overlap 2338984 2339008 TTATAGCATAAAAAA GGCTGGAT GGAT ATCCAGCC TGTGATAACAGTTAA ruvC 2339587 - 2339066 - | Holliday junction resolvase YpsIP31758_2033 2340539 - 2339796 - | hypothetical protein TERM 2401 2340492 - 2340506 + g 75 -5.6 -4.66537 | overlap 2340482 2340494 GCGTTTGGCATCCTG TGCCGC TTT GCGGTG TTTTGTGTTGGCCCA TERM 2402 2340494 - 2340504 + g 73 -8.2 -3.94773 | overlap 2340482 2340492 GTTTGGCATCCTGTG CCGC TTT GCGG TGTTTTGTGTTGGCC YpsIP31758_2034 2341040 - 2340597 - | dATP pyrophosphohydrolase TERM 2403 2340673 - 2340659 - G 78 -11.4 -3.0263 | AGGACTTGGTCAATA CGGCAG CCT CTGCCG CATCCAACCACTGGT aspS 2342836 - 2341040 - | aspartyl-tRNA synthetase TERM 2404 2342750 - 2342737 - G 73 -2.3 -5.16841 | GCATATCAATAAAAA TCAGG CCAC CCAGA TCACGACGACGGTTA TERM 2405 2343027 - 2343054 + H 77 -8.6 -3.92542 | opp_overlap 2343030, overlap 2343030 ACTTTATTGTTTTAT TAACGCGTTA TGTTGTAT TAACGCGTTA TTGTTTCAACCTCAG YpsIP31758_2036 2343805 - 2344620 + | hypothetical protein YpsIP31758_2037 2344800 - 2345195 + | hypothetical protein TERM 2406 2345255 - 2345271 + F 100 -10.8 -4.46072 | GCAACCGTTAGTCTG GGCGGC ATATC GCCGCC TTTATGTTTATTCCC TERM 2407 2346109 - 2346093 - g 70 -2.1 -4.94992 | opp_overlap 2346092, overlap 2346094 GGAAACCCACAAAAA TCGTCTG CAT CAGGCGG GGTTTGAACACGCGG YpsIP31758_2038 2345386 - 2346189 + | putative methyltransferase YpsIP31758_2039 2346186 - 2347157 + | putative methyltransferase TERM 2408 2347187 - 2347163 - T 100 -10 -4.80959 | TAAGCCATAAGAAAA TCCCCCAACT CACCC AGATGGGGGA TACCGTTCGTTATAT cutC 2348114 - 2347350 - | copper homeostasis protein CutC TERM 2409 2347941 - 2347924 - G 74 -2.7 -5.06414 | gap 1, overlap 2347927 CTGCTGTAACAAAAA TCA-CCAC CAC GTGGCCGA ACTATCGGATGAACC YpsIP31758_2041 2348921 - 2348346 - | hypothetical protein YpsIP31758_2042 2349070 - 2348942 - | hypothetical protein TERM 2410 2349968 - 2349980 + G 74 -9.1 -3.67517 | CAACCACGTCGGTGA CTGGG GTA CCCAG TTTGGCATGTTGATC TERM 2411 2350433 - 2350407 - g 76 -2.3 -5.28778 | gap 1 ATCATCCAGAAAAAA GATGGCGGC-TA CCTC TACACCACCACC GATATTGCCTGCGCC argS 2349486 - 2351216 + | arginyl-tRNA synthetase TERM 2412 2351250 - 2351230 - T 91 -6.8 -5.4477 | overlap 2351231 2351249 AAATCGTCAAAAAAA GGCCCCTC GGGCT GAGAGACC CCCAGAAACATCATT TERM 2413 2351241 - 2351231 - T 75 -8.2 -3.85235 | overlap 2351230 AATCGTCAAAAAAAG GCCC CTC GGGC TGAGAGACCCCCAGA TERM 2414 2351304 - 2351327 + T 73 -3.9 -5.07523 | overlap 2351306 AAAGGGCCTTTATAT TTCTCGAAA AACAAC TTTCGAGTA TTTTATTTGTCTGTC YpsIP31758_2044 2356213 - 2351366 - | adhesin/hemagglutinin TERM 2415 2351889 - 2351917 + g 74 -3.1 -5.1675 | overlap 2351868 2351866 ATTGTGTCTTTGGGT GGTGATTTTTTGT TAT ACATCAACTCACC TTTTTTAATACCTGA TERM 2416 2354313 - 2354337 + g 80 -4.3 -5.19261 | overlap 2354314 GCAGTAGAAGTACTC TTGTTGGTATG CAT TATACCACCAG TTTTTTGATCCCTTT YpsIP31758_2045 2357796 - 2356255 - | ShlB/FhaC/HecB family haemolysin secretion/activation protein TERM 2417 2357186 - 2357151 - G 95 -15.6 -2.78495 | opp_overlap 2357163, overlap 2357147 2357148 2357182 TAGTATTAAAACTGA TAGCGTCAGATAGCCC AAAT GGGCTATCTAAGGCTA GTGATACTCTCGCTT TERM 2418 2358244 - 2358224 - R 72 -7.6 -3.76373 | opp_overlap 2358224 2358219 2358216 TTGTGAATATGTAAA TAGCCCAA AATAA TCGGGCTA TTTAATACATTATTT mviN 2359824 - 2358289 - | integral membrane protein MviN TERM 2419 2358346 - 2358334 - G 70 -7.7 -3.81879 | overlap 2358326 TTTAAAACCTAATAA TGCCA ACA TGGCA AAGTAGGCAATAACA TERM 2420 2359717 - 2359705 - G 89 -6.2 -5.28826 | AAATGCCACAAAAAA GGCG TCCGT CGCC ATACCTGCACCAAAT TERM 2421 2359888 - 2359862 - R 71 -8.7 -3.34894 | opp_overlap 2359866, overlap 2359860 2359863 2359866 AATGTGCTGTAAATA CCAACGCCTAC GGTCT GCAGGCGTTGC TCTACCCAATGGGGG TERM 2422 2359887 - 2359863 - R 83 -12.2 -2.60615 | opp_overlap 2359866, overlap 2359862 2359860 2359866 ATGTGCTGTAAATAC CAACGCCTAC GGTCT GCAGGCGTTG CTCTACCCAATGGGG YpsIP31758_2047 2361020 - 2360091 - | putative oxidoreductase TERM 2423 2360818 - 2360804 - G 85 -7.1 -4.88736 | TACTATGGACAAAAA CGGCA TCACT TGCCG CAGCGAGCGTATCCA YpsIP31758_2048 2361714 - 2361013 - | hypothetical protein TERM 2424 2361067 - 2361104 + g 82 -5.5 -5.0133 | opp_overlap 2361066, overlap 2361069 TGACAACTGGATAAC CTGCTGTTCAAGCTGGG CAAC CCTAGCTTCAAGGGCTG TTTTTTCAAGGGCTA rimJ 2362306 - 2361722 - | ribosomal-protein-S5-alanine N-acetyltransferase YpsIP31758_2050 2362600 - 2363805 + | multidrug resistance protein MdtH TERM 2425 2363811 - 2363858 + F 74 -10.1 -3.14931 | gap 1, opp_overlap 2363824, overlap 2363826 CAGCAGCTAACGTTA TGTCCCTTATCAACCGGAGACG TTTTT CCTTTCCGGTTGATAAGC-ACA TTCCTCGCGCATACA TERM 2426 2364351 - 2364339 - g 71 -4.9 -4.62302 | GAATACCTGCAAAAA CATAA TAA TTATG AAAAACAGATCGGTA YpsIP31758_2051 2364222 - 2364785 + | hypothetical protein TERM 2427 2364860 - 2364828 - T 76 -7.8 -4.19817 | overlap 2364829 CCCATCTACCCAAAA TCATTCGCTTGC AACAAAACA GCAAGCGAATGC ATCCCGATGAATCTA TERM 2428 2364859 - 2364829 - T 84 -11.3 -3.11569 | overlap 2364828 CCATCTACCCAAAAT CATTCGCTTGC AACAAAACA GCAAGCGAATG CATCCCGATGAATCT YpsIP31758_2052 2365799 - 2365239 - | TorD family cytoplasmic chaperone YpsIP31758_2053 2366573 - 2365836 - | putative hydrolase TERM 2429 2366742 - 2366726 - R 73 -7.3 -4.16016 | overlap 2366738 GTATCCCTCAATAAA TGCCGAT GAA ATCAGCA AATTGCTATAACTTT TERM 2430 2366981 - 2366961 - R 87 -8.2 -4.56978 | opp_overlap 2366961 CCGCCAAATAATAAA CCCCGACC TTTAT GGTTGGGG TTTTTCTTTTGCATC TERM 2431 2366961 - 2366981 + r 100 -10.4 -5.48213 | opp_overlap 2366961 CCGCCAAATAATAAA CCCCGACC TTTAT GGTTGGGG TTTTTCTTTTGCATC YpsIP31758_2054 2368270 - 2367158 - | ROK family protein YpsIP31758_2055 2369114 - 2368284 - | glycerophosphoryl diester phosphodiesterase family protein YpsIP31758_2056 2369328 - 2370395 + | putative spermidine/putrescine ABC transporter, ATP-binding protein TERM 2432 2371055 - 2371066 + G 85 -7.2 -4.87665 | TTTATCGGTGCACTC GGCG ATTT CGCC TTTTTCTCGGTCGCC YpsIP31758_2057 2370392 - 2371258 + | putative spermidine/putrescine ABC transporter, permease protein YpsIP31758_2058 2371255 - 2372091 + | putative spermidine/putrescine ABC transporter, permease protein YpsIP31758_2059 2372111 - 2373193 + | putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein TERM 2433 2373281 - 2373309 + F 75 -10.3 -2.87564 | overlap 2373277 TCCCTGGCGGGTACA GTCGCTGTATTGT TCG ACGAAACGGCGAC TGTATCAGCGAATGG YpsIP31758_2060 2373494 - 2374369 + | glycerophosphoryl diester phosphodiesterase family protein TERM 2434 2374351 - 2374365 + F 74 -10 -3.18452 | TGACTCCCCCGCCAC CGCCAA AAA TTGGCG TTAAATTCACCTAAT TERM 2435 2374512 - 2374475 - f 88 -12.7 -2.62184 | TCGCCCCCTATAGTA CCGCCCCGTTGCACCAC TATA ACGGCGCAACGAAACGG TGAGGTGTCTGAGTG TERM 2436 2374614 - 2374635 + F 100 -6.5 -5.95166 | CAAATTCAAAAATAA GGTTCTGAC GAAA GTCGGGGCC TTTTTTTTGGTTACA YpsIP31758_2061 2375444 - 2377141 + | putative sulfate transporter YchM TERM 2437 2377185 - 2377162 - T 81 -5.2 -5.1861 | overlap 2377163 TTGATTATCAAAAAA GGCAGCTTAG TTAC CTACGCTGCG TGAGATTATTGACAA TERM 2438 2377184 - 2377163 - T 75 -8.7 -3.70443 | overlap 2377162 TGATTATCAAAAAAG GCAGCTTAG TTAC CTACGCTGC GTGAGATTATTGACA TERM 2439 2377263 - 2377289 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 2377252, overlap 2377258 2377264 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2440 2377264 - 2377290 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 2377252, overlap 2377258 2377263 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2441 2377353 - 2377376 + T 100 -11 -5.46657 | overlap 2377344 2377349 TTGTCAGCAGTCTGA GGCAGCTTAG TTGC CTACGCTGCC TTTTTTATTGCCCTA kdsA 2378348 - 2377494 - | 2-dehydro-3-deoxyphosphooctonate aldolase YpsIP31758_2063 2379253 - 2378444 - | putative transcriptional regulator YpsIP31758_2064 2379651 - 2379250 - | sirB family protein YpsIP31758_2065 2380545 - 2379715 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase prfA 2381627 - 2380545 - | peptide chain release factor 1 TERM 2442 2381271 - 2381252 - G 80 -7.1 -4.60487 | opp_overlap 2381266, overlap 2381254 TATCACCGGCAAAAA TAGCGGC TTCATC GCCGCCA GTCCCCGCGCGGATT hemA 2382922 - 2381660 - | glutamyl-tRNA reductase lolB 2383228 - 2383851 + | outer membrane lipoprotein LolB ispE 2383853 - 2384752 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase prs 2385093 - 2386040 + | ribose-phosphate pyrophosphokinase TERM 2443 2386175 - 2386210 + G 76 -9 -3.92577 | opp_overlap 2386180, overlap 2386180 TTGAAGCAGATAAAG AAAAACCCGTTGAAGC CTGT GCGACAACGGGTTTTC TGTTTTTGAAGATTC TERM 2444 2386205 - 2386180 - g 100 -8.9 -5.42975 | opp_overlap 2386175 2386180 GCAGATAAAGAAAAA CCCGTTGAAGC CTGT GCGACAACGGG TTTTCTGTTTTTGAA TERM 2445 2386180 - 2386205 + G 100 -8.9 -4.98672 | opp_overlap 2386180, overlap 2386175 GCAGATAAAGAAAAA CCCGTTGAAGC CTGT GCGACAACGGG TTTTCTGTTTTTGAA YpsIP31758_2072 2386138 - 2386251 + | hypothetical protein YpsIP31758_2071 2386514 - 2386242 - | hypothetical protein YpsIP31758_2073 2386740 - 2386603 - | hypothetical protein TERM 2446 2386741 - 2386711 - G 71 -8.5 -3.68836 | ATATTTAGCCAAGAA GTTGAATGATTCC GAAGG AAAATCATTCAAC TATACAATTATTTTT TERM 2447 2387310 - 2387326 + G 73 -7.3 -4.18018 | opp_overlap 2387310 TCCTGGTGATAAAAG CAAAGTC ACT GGCTTTG TTTTGGGTAAACCCC pth 2386876 - 2387466 + | peptidyl-tRNA hydrolase ychF 2387631 - 2388722 + | translation-associated GTPase TERM 2448 2388802 - 2388785 - f 100 -11.3 -4.47485 | opp_overlap 2388785 AAAAATGCTATAAAA TCCACGC AATT GCGTGGA TTTTTGTTTTCATAG TERM 2449 2388785 - 2388802 + F 100 -11.3 -5.50723 | opp_overlap 2388785 AAAAATGCTATAAAA TCCACGC AATT GCGTGGA TTTTTGTTTTCATAG YpsIP31758_2076 2388935 - 2389333 + | IS3 family transposase orfA TERM 2450 2389859 - 2389827 - g 100 -16.5 -3.63744 | opp_overlap 2389832, overlap 2389832 TCTGTCGTTAAAATA CAAAACGCCCGATGA AGT TCATCAGGCGTTTTA AGGCAAAAAAGTGTC TERM 2451 2389832 - 2389854 + G 95 -12 -4.07568 | opp_overlap 2389827 2389832 CGTTAAAATACAAAA CGCCCGATGA AGT TCATCAGGCG TTTTAAGGCAAAAAA TERM 2452 2389854 - 2389832 - g 100 -14.2 -4.89567 | opp_overlap 2389832, overlap 2389827 CGTTAAAATACAAAA CGCCCGATGA AGT TCATCAGGCG TTTTAAGGCAAAAAA YpsIP31758_2077 2389351 - 2389860 + | IS3 family transposase orfB YpsIP31758_2078 2390306 - 2389908 - | rhodanese domain-containing protein YpsIP31758_2079 2391210 - 2390314 - | alpha/beta hydrolase domain-containing protein YpsIP31758_2080 2391860 - 2391207 - | hypothetical protein YpsIP31758_2081 2392449 - 2392063 - | hypothetical protein YpsIP31758_2082 2393629 - 2392640 - | hypothetical protein TERM 2453 2393914 - 2393885 - RH 93 -8.7 -4.46112 | overlap 2393881 2393864 2393887 2393888 TGTCAGTTAAAGAAA TACTTTCCTGACA AAAA TGTCAGGAAAATG TCAGCCTGGTGTTGG TERM 2454 2393912 - 2393887 - RH 95 -11.3 -3.83744 | overlap 2393881 2393864 2393885 2393888 TCAGTTAAAGAAATA CTTTCCTGACA AAAA TGTCAGGAAAA TGTCAGCCTGGTGTT TERM 2455 2393911 - 2393888 - RH 89 -12.6 -2.89523 | overlap 2393881 2393864 2393887 2393885 CAGTTAAAGAAATAC TTTCCTGACA AAAA TGTCAGGAAA ATGTCAGCCTGGTGT YpsIP31758_2083 2393997 - 2393872 - | hypothetical protein TERM 2456 2394595 - 2394584 - gH 76 -7.2 -4.3739 | GAGGTGGCGATAAAA CGCC TGCG GGCG AAAATAGATACGCCC YpsIP31758_2084 2393996 - 2394688 + | DNA-binding heavy metal response regulator TERM 2457 2395383 - 2395360 - g 71 -4.4 -4.67904 | overlap 2395362 GATGAACTGCAAAAA CTGGCCGTCG CATT CAACGGCGTG CTCGAACGGCAGGAA YpsIP31758_2085 2394700 - 2396085 + | heavy metal sensor histidine kinase TERM 2458 2396183 - 2396207 + F 82 -8.6 -4.30104 | opp_overlap 2396188, overlap 2396183 2396186 TTTTGCATACAGGTT TAAGAGGAGG ATCTC CCTCCTCTTC TTCTTTCTTGCTTTA TERM 2459 2396186 - 2396204 + F 91 -10.3 -4.22676 | opp_overlap 2396188, overlap 2396183 2396183 TGCATACAGGTTTAA GAGGAGG ATCTC CCTCCTC TTCTTCTTTCTTGCT YpsIP31758_2086 2396362 - 2396784 + | carboxymuconolactone decarboxylase family protein YpsIP31758_2087 2396839 - 2397309 + | cupin domain-containing protein YpsIP31758_2088 2397314 - 2397442 + | hypothetical protein TERM 2460 2398127 - 2398137 + G 73 -3.2 -4.87133 | CGTAGTGGATAAATC TGGC CCG GCTA TTTTGTTTACACACT YpsIP31758_2089 2397522 - 2398595 + | hypothetical protein TERM 2461 2398630 - 2398603 - f 85 -4 -5.5112 | opp_overlap 2398603 2398600, overlap 2398604 TTCAGTAATAAAAAA TTAGTGGGGTCG TTGA CGGCTCCACTAC TGCTTATATACTCGT TERM 2462 2398629 - 2398604 - f 70 -7.5 -3.89587 | opp_overlap 2398603 2398600, overlap 2398603 TCAGTAATAAAAAAT TAGTGGGGTCG TTGA CGGCTCCACTA CTGCTTATATACTCG TERM 2463 2398716 - 2398685 - f 84 -10.9 -3.63515 | opp_overlap 2398684 2398683 GGCTACGCTCAACAA CCCCAGGTACTTA TTTATG TAAGCGCCTGGGG ACTTACTTCGTTGCC YpsIP31758_2090 2399387 - 2400292 + | hypothetical protein TERM 2464 2401061 - 2401045 - g 83 -2.2 -5.59357 | overlap 2401056 ATGAGATCAAAAAAA GCTATC GAAAA GATCGC ACACAATCATAAAGC YpsIP31758_2091 2400298 - 2401230 + | hypothetical protein YpsIP31758_2092 2401217 - 2402167 + | hypothetical protein TERM 2465 2402161 - 2402179 + F 70 -9.6 -2.78695 | opp_overlap 2402160 2402159, overlap 2402160 CATGAGTCCAAAACC CCGCTAAT ATA GTTAGCGG ATTACTTTATCTCAA TERM 2466 2402444 - 2402473 + F 87 -8.5 -4.57353 | gap 1, opp_overlap 2402444 AACTTAGTGACTCAA GCCGGGAGTGGCGG TCT TC-TCACACCCGGC TTTTATCTAATAGCC YpsIP31758_2093 2402508 - 2403188 + | oxidoreductase, short chain dehydrogenase/reductase family protein TERM 2467 2403548 - 2403532 - g 72 -10.9 -2.52023 | opp_overlap 2403541, overlap 2403531 2403529 2403535 2403537 GATGGATATCAATAC CAACAGC CTT GCTGTTG CCAGCAATCGCATTG YpsIP31758_2094 2403293 - 2403952 + | hypothetical protein YpsIP31758_2095 2404725 - 2404087 - | hypothetical protein YpsIP31758_2096 2407083 - 2404972 - | hypothetical protein TERM 2468 2407944 - 2407926 - g 73 -2.5 -5.04385 | gap 1 TATACGCGGAAAAAA TCAA-GAG TTTG CTCGTTGA GATCTTAAGTGAACG YpsIP31758_2097 2407661 - 2409823 + | hypothetical protein YpsIP31758_2098 2409887 - 2411605 + | hypothetical protein TERM 2469 2411642 - 2411664 + F 77 -6.3 -4.65933 | TGGCAATATTGAGGA GCAGGCAAT TAAAT GTTGTCTGC TTTCTTTTAAAGATG YpsIP31758_2099 2411775 - 2412239 + | hypothetical protein YpsIP31758_2100 2413587 - 2412400 - | UDP-glycosyltransferase family protein YpsIP31758_2101 2414168 - 2413584 - | hypothetical protein TERM 2470 2413636 - 2413624 - G 73 -5.5 -4.63486 | ACTGCCGCAATAAAA CGCTC ACA AAGCG TCAGTAATGCTGGGT YpsIP31758_2102 2415319 - 2414165 - | hypothetical protein YpsIP31758_2103 2416281 - 2415319 - | NAD dependent epimerase/dehydratase family protein TERM 2471 2416241 - 2416222 - G 74 -9.2 -3.727 | GTCATGACAGGCAAA GCGGCGCA TAAA TGCCCCGC CAATAAACCCCGATG YpsIP31758_2105 2416315 - 2416440 + | hypothetical protein YpsIP31758_2104 2417701 - 2416415 - | hypothetical protein YpsIP31758_2106 2418504 - 2417698 - | metallo-beta-lactamase family protein YpsIP31758_2107 2419513 - 2418497 - | NAD-dependent epimerase/dehydratase family protein YpsIP31758_2108 2420534 - 2419527 - | hypothetical protein TERM 2472 2423066 - 2423038 - g 78 -5.3 -4.89477 | CCCGTAAGAATAAAA GATTTGGATTACG AGC CGGAACCGAAATC ACCCATCAAGCAGAC YpsIP31758_2109 2421171 - 2423165 + | chorismate-binding domain-containing protein YpsIP31758_2110 2423915 - 2423343 - | putative cold inducible protein Ves hutF 2425285 - 2423915 - | N-formimino-L-glutamate deiminase hutC 2425433 - 2426200 + | histidine utilization repressor TERM 2473 2426249 - 2426271 + F 70 -7.1 -3.9009 | TTACGCAATTGTGAA TTCGCTATC TTGCT GATAGTGAA TTTATAGGCTAGGTT hutI 2426411 - 2427631 + | imidazolonepropionase hutG 2427628 - 2428434 + | N-formylglutamate amidohydrolase TERM 2474 2428585 - 2428569 - T 71 -4.3 -4.80882 | overlap 2428572 AGCTCACAGTAAAAA GACGGGA TTC CCCCACC TTTCAGGCTGCTGAC TERM 2475 2428929 - 2428948 + T 86 -10.6 -3.82789 | opp_overlap 2428930, overlap 2428930 TGCCAATAACCTCAA AGGCGGGG TTTC CCCCGCCG TTCTATCTTTCTATT TERM 2476 2428947 - 2428930 - T 100 -14.1 -3.72051 | opp_overlap 2428929 2428930 GCCAATAACCTCAAA GGCGGGG TTTC CCCCGCC GTTCTATCTTTCTAT TERM 2477 2428930 - 2428947 + T 95 -14.1 -2.88047 | opp_overlap 2428930, overlap 2428929 GCCAATAACCTCAAA GGCGGGG TTTC CCCCGCC GTTCTATCTTTCTAT TERM 2478 2429054 - 2429036 - T 71 -4.6 -4.58395 | TCTACTGCTTAAAAA CGGTAA GTCAAGT TTACCG CAACAACATCATCCG YpsIP31758_2115 2430111 - 2429029 - | outer membrane protein N YpsIP31758_2116 2430207 - 2430356 + | hypothetical protein astE 2431830 - 2430838 - | succinylglutamate desuccinylase astB 2433234 - 2431891 - | succinylarginine dihydrolase TERM 2479 2433046 - 2433057 + g 71 -7.2 -4.07877 | CGGCCGCTCCTGAGG GGGG AGAA CCCC TTGTTTGTAGCCTAA TERM 2480 2433087 - 2433136 + g 71 -6.8 -4.29396 | gap 3, opp_overlap 2433100, overlap 2433088 2433091 AATCCGCCAAGGCTT TCAT-CTTCAATAACCCTTGTTTGG CTG CCAAACGAGGGTTG--GAAGTATGG TTTTGATGCGTGGTT TERM 2481 2433091 - 2433131 + g 70 -10 -3.12521 | gap 2, opp_overlap 2433100, overlap 2433088 2433087 CGCCAAGGCTTTCAT CTTCAATAACCCTTGTTTGG CTG CCAAACGAGGGTTG--GAAG TATGGTTTTGATGCG TERM 2482 2433124 - 2433100 - G 90 -12.9 -3.63515 | opp_overlap 2433091 2433088 2433087 TTTCATCTTCAATAA CCCTTGTTTGG CTG CCAAACGAGGG TTGGAAGTATGGTTT astD 2434760 - 2433258 - | succinylglutamic semialdehyde dehydrogenase TERM 2483 2434362 - 2434372 + g 71 -8.2 -3.70902 | CACTGACATGCTGTC CCCC ATT GGGG TTTGGCTATGGCCGG TERM 2484 2434601 - 2434588 - G 81 -9.5 -4.09685 | GCCCATGCCGGAAAA GCCGC TCTT GCGGC ATGGCAGGCCAGAGT astA 2435821 - 2434772 - | arginine succinyltransferase TERM 2485 2435508 - 2435495 - G 71 -4.5 -4.58663 | opp_overlap 2435495 ATCATTGCTCAAAAA CAGTG TCGG CACCG ATTTATACACATTGA TERM 2486 2435853 - 2435865 + r 74 -6.3 -4.57073 | opp_overlap 2435853 2435852, overlap 2435841 GCCTACGGCATAAAC GTTAC GAC GTAAC TTTTTGACAAACCTG argM 2437098 - 2435854 - | bifunctional succinylornithine transaminase/acetylornithine transaminase YpsIP31758_2122 2439156 - 2437735 - | GntR family transcriptional regulator TERM 2487 2437949 - 2437987 + g 73 -5.3 -4.57837 | opp_overlap 2437958 2437960, overlap 2437957 2437958 2437960 GGCTCCAATTCTAAC CATAAGAAATAGCCGCC AGCGG GGTGGCTGATTTTGATG TTTTTGGGGAAGTGT TERM 2488 2440188 - 2440172 - g 70 -2.2 -4.87803 | opp_overlap 2440175 GAGTCGTAAATAAAA CCGCTG ATTTA CAACAG AAAAATCAGGTTTTG narX 2439466 - 2441247 + | nitrate/nitrite sensor protein NarX TERM 2489 2441763 - 2441777 + F 75 -8.5 -3.74693 | TTATTTATCGTTAAC CGGGC CTAAT GCCCG TTTAATACAGTAAAG chaA 2441814 - 2442914 + | calcium/sodium:proton antiporter TERM 2490 2442934 - 2442958 + T 100 -14.3 -5.48787 | opp_overlap 2442934 CGTCTGAATAGCAAA GGGCAAGCGCT GTT AACGCTTGCCC TTTTTTGTGTATTCT TERM 2491 2442958 - 2442934 - T 100 -16.5 -3.92324 | opp_overlap 2442934 CGTCTGAATAGCAAA GGGCAAGCGCT GTT AACGCTTGCCC TTTTTTGTGTATTCT YpsIP31758_2125 2443805 - 2443017 - | hypothetical protein YpsIP31758_2126 2444143 - 2443865 - | hypothetical protein TERM 2492 2444098 - 2444108 + g 77 -4 -5.07652 | AACGAGTCGCTTGAG TCAA TCT TTGA TTTTGTTTTAACAGC YpsIP31758_2127 2445292 - 2444582 - | acetyltransferase YpsIP31758_2128 2446298 - 2445831 - | putative biofilm PGA synthesis protein PgaD TERM 2493 2446148 - 2446123 - G 77 -10.5 -3.54459 | GCAATCGTCGTCAAA CCGCTGAGAAT ATAA ATCCTCAACGG TATCGGCCCCATATG pgaC 2447629 - 2446295 - | N-glycosyltransferase PgaC pgaB 2449640 - 2447619 - | biofilm PGA synthesis lipoprotein PgaB TERM 2494 2448986 - 2448998 + g 75 -3.4 -5.09259 | GCTTAAAGGCTTCAA CAGT TTCAT ACTG TTTTGTTTTGGGATC pgaA 2452121 - 2449653 - | outer membrane protein PgaA TERM 2495 2450085 - 2450071 - G 86 -7.8 -4.84359 | opp_overlap 2450070 2450078 TTACCGTCAGAAAAA CGCGAC GGC GTCACG CTAAGTTCAGCATCA YpsIP31758_2132 2454007 - 2452790 - | M24 family peptidase TERM 2496 2453609 - 2453624 + g 71 -4 -4.66609 | gap 1 CTTATCCAGCACTCC CGCATCT TCA AG-TGCG TTTTTGACTAAACTA TERM 2497 2453653 - 2453677 + g 77 -2.8 -5.32882 | gap 1, overlap 2453653 2453654 TAAAGACCGCTTCCA C-TGGTGGGCC AATA GGCCGATCACG TTTTTTATAATGATG tehB 2455035 - 2454148 - | tellurite resistance protein TehB TERM 2498 2454380 - 2454407 + g 77 -8.6 -4.1523 | CCGGGTAAAGTACAC TCCTGCATATTA CTGA TAATATGTGGGA TTCTTTCTGGTTGCA YpsIP31758_2134 2455519 - 2455208 - | cytochrome c family protein resA 2456016 - 2455519 - | thiol-disulfide oxidoreductase YpsIP31758_2136 2456719 - 2456006 - | ABC transporter, ATP-binding protein YpsIP31758_2137 2457853 - 2456723 - | ABC transporter, permease protein TERM 2499 2456799 - 2456782 - G 71 -9.1 -3.61398 | GTCGGGTGGGAACAA TCGCCGC CACA GCGGCAA CAAACAACGAAAGCA TERM 2500 2456977 - 2456991 + g 73 -10 -3.33744 | overlap 2456982 GGATAATGTCACGCC CACTGG CAC CCAGTG CTTTTTGCAACGCAA TERM 2501 2456982 - 2456992 + g 77 -6.8 -4.56597 | overlap 2456977 ATGTCACGCCCACTG GCAC CCA GTGC TTTTTGCAACGCAAA TERM 2502 2457139 - 2457121 - G 71 -8.8 -3.62046 | opp_overlap 2457121 2457118, overlap 2457122 TTATCTTGTCAAGAA CCTGCCCC TCA GAGGCAGA TACTTTGCGAATTGG TERM 2503 2457138 - 2457122 - G 71 -10.1 -2.77013 | opp_overlap 2457121 2457118, overlap 2457121 TATCTTGTCAAGAAC CTGCCCC TCA GAGGCAG ATACTTTGCGAATTG YpsIP31758_2138 2459186 - 2457894 - | ABC transporter, permease protein YpsIP31758_2139 2460598 - 2459189 - | YHS domain-containing protein TERM 2504 2460227 - 2460212 - G 74 -9 -3.69333 | TATAACCCAGCCAAA TGCCAC CACG GTGGCA GCCAGATTGAGCAAT YpsIP31758_2140 2461426 - 2460899 - | hypothetical protein YpsIP31758_2141 2463549 - 2461630 - | FTR1 family iron permease TERM 2505 2462644 - 2462663 + g 75 -7.8 -4.26461 | AAAGTAGGCATCCTG CACCGCCA TCAT TGCCGGTG TTATTTTCCCTTGCT TERM 2506 2463293 - 2463308 + g 77 -4.6 -5.00616 | ATTTCGCCAAAGGCC GCCTCC ATCT GGAAGC TTTTTTGCGCGGAGA TERM 2507 2463682 - 2463667 - R 71 -3.2 -5.00884 | opp_overlap 2463667 ATTTTTTTCAAAAAA TGCGTA CTGA TGCGCA ATTTACCCCACCAAT TERM 2508 2463882 - 2463914 + r 91 -12.8 -2.88887 | gap 1, opp_overlap 2463882, overlap 2463878 2463885 GCCAGAAAGAAAAAA CTGGCAGTG-GCTGC TTTC GCAACACACTGCCAG TCACTTTTATTTCAA TERM 2509 2463914 - 2463882 - R 100 -15 -5.72622 | gap 1, opp_overlap 2463878 2463882 2463885 GCCAGAAAGAAAAAA CTGGCAGTG-GCTGC TTTC GCAACACACTGCCAG TCACTTTTATTTCAA TERM 2510 2463959 - 2463949 - R 70 -2.6 -5.07567 | TTATATTTCAAAAAA TTAA ATT TTAA CAGCAACTTACTTGC TERM 2511 2464064 - 2464038 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 2464047, overlap 2464039 2464054 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2512 2464065 - 2464039 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 2464047, overlap 2464038 2464054 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2513 2464140 - 2464160 + r 84 -5.4 -5.25803 | overlap 2464141 2464156 ACTTTGTCAATAACC TCCAGCAA CTTAC TTGCTGGC TTTTTTATCCAGATT TERM 2514 2464141 - 2464159 + r 78 -8.9 -3.74397 | overlap 2464140 2464156 CTTTGTCAATAACCT CCAGCAA CTTAC TTGCTGG CTTTTTTATCCAGAT YpsIP31758_2142 2465789 - 2464149 - | major facilitator transporter TERM 2515 2464276 - 2464289 + g 70 -8.1 -3.81146 | AAACCGAATTTCAGC GCACG TAAC CGTGC TTCTTCATTCACCCG TERM 2516 2464956 - 2464969 + g 75 -8.1 -4.30416 | TGTAATCACGTCCAG CGCCA GTAA TGGCG TTTTACCTTGCTCCT YpsIP31758_2143 2466907 - 2465900 - | glutaminase YpsIP31758_2144 2467565 - 2467359 - | hypothetical protein TERM 2517 2468468 - 2468501 + G 73 -4.7 -4.7373 | GGACAGAGATGATCT GTTAGTGGTAACCAA CGAC TTTGTTATTGCTAAC TTTTTGATCGAATCC YpsIP31758_2145 2468118 - 2468888 + | DeoR family transcriptional regulator TERM 2518 2469185 - 2469151 - T 73 -3.7 -4.96845 | ATAAAAATAAATAAA TCTTATTCCATGGGT TAGAT ACATATGAAATAAGA TAAAATGCAATATAA YpsIP31758_2146 2469510 - 2469391 - | hypothetical protein TERM 2519 2469844 - 2469856 + G 71 -2.7 -4.93365 | GGTTTATCTGGTTTG TGGAA TTT TTTCA TTTTTCATTCTCCGG TERM 2520 2470260 - 2470272 + G 71 -4.7 -4.49556 | GTATTCATTTGATTA CCGAC AAC GGCGG TTTCTTTCCTCACGG ansP 2469635 - 2471164 + | L-asparagine permease YpsIP31758_2148 2472520 - 2471360 - | aminotransferase, class I and II TERM 2521 2473243 - 2473253 + G 78 -5.4 -4.98255 | CCACTGTGCAATATT TGGT GCA ACCA TTTTTATGGTTCAGC nqrE1 2472872 - 2473471 + | Na(+)-translocating NADH-quinone reductase subunit E YpsIP31758_2150 2474738 - 2473776 - | LysR family substrate binding transcriptional regulator TERM 2522 2474197 - 2474215 + g 77 -10.3 -3.4582 | opp_overlap 2474197, overlap 2474195 GCCTGCCGTAACGCA CTGTCGG CAGTA CCGACAG TATTTGCTAACGTCG TERM 2523 2474215 - 2474197 - G 72 -11 -2.52464 | opp_overlap 2474195 2474197 GCCTGCCGTAACGCA CTGTCGGC AGT ACCGACAG TATTTGCTAACGTCG YpsIP31758_2151 2474850 - 2475719 + | amidohydrolase family protein TERM 2524 2475757 - 2475731 - f 73 -2.5 -5.16681 | gap 2, overlap 2475734 TTAAAAATAACAAAA TAACT--TGTGAG GTG CTCACAAGAGTTA AAAAGCCAGTCTGTA TERM 2525 2475752 - 2475734 - f 100 -11.8 -4.59946 | overlap 2475731 AAAATAACAAAATAA CTTGTGAG GTG CTCACAAG AGTTAAAAAGCCAGT TERM 2526 2476287 - 2476328 + G 72 -5.7 -4.33274 | opp_overlap 2476285, overlap 2476286 TACTATCAGAGGAGT GGGCGTGGCGCGCATTATT CTGG ATTGGTGTGCTTCCCGCCC TTTTAGTACTCTACA YpsIP31758_2152 2475785 - 2477014 + | major facilitator transporter YpsIP31758_2153 2477234 - 2477794 + | hypothetical protein TERM 2527 2478043 - 2478065 + G 73 -2 -5.10208 | overlap 2478045 GGGACATTTCTCGTT TATTCCGC AAGGCGA GTGGAATG TTTTTATTCCCATTG YpsIP31758_2154 2477819 - 2478292 + | hypothetical protein TERM 2528 2478296 - 2478308 + T 71 -3.3 -5.03145 | overlap 2478297 GATAGCCAATAATTT TGCTC TTG GGGCG TTTTTTAACCGATTG YpsIP31758_2155 2479245 - 2478367 - | LysR family substrate binding transcriptional regulator TERM 2529 2478424 - 2478402 - G 100 -16.3 -3.03635 | CAAAGTTTCTTAATA CCGGCGAGG TATCC CCTCGCCGG TACGCCAACGCGAGC TERM 2530 2479305 - 2479271 - H 78 -9.4 -3.61541 | overlap 2479269 AAAAGCAATTAAACA CACCGGTATCATATAT TGG ATAAATGATAACGGCG ACCATAGACTAAGCG TERM 2531 2480145 - 2480169 + G 86 -13.6 -3.01416 | gap 1, overlap 2480168 CTGTTGCACGTCAGG CCCGC-CGGGT ACTT ACCCGAGCGGG TATCTCTGCCTGATA YpsIP31758_2156 2479340 - 2480182 + | HpcH/HpaI aldolase/citrate lyase family protein YpsIP31758_2157 2480247 - 2480774 + | MaoC domain-containing protein cat2 2480797 - 2482119 + | 4-hydroxybutyrate coenzyme A transferase YpsIP31758_2159 2482170 - 2482292 + | hypothetical protein YpsIP31758_2160 2482946 - 2483578 + | LuxR family DNA-binding response regulator TERM 2532 2483653 - 2483679 + F 100 -14.5 -3.31931 | overlap 2483646 TGCGTACCGTACTCT GCTGCCTGCTA CTGAT TAGCGGGCAGC TTCATGCTTCTCTAA TERM 2533 2484595 - 2484610 + G 74 -3.9 -4.99638 | TCCGTGACCGCCGGA CCGGT GAAATG GCCGG TTTTTCTGTCGATCT YpsIP31758_2161 2483694 - 2487554 + | sensor histidine kinase/response regulator TERM 2534 2487584 - 2487600 + TF 100 -5.8 -6.23209 | opp_overlap 2487584 TTCCCCTATTAAAAG CGCCAG TCTTC TTGGCG TTTTTTTTTGATTCA YpsIP31758_2162 2487936 - 2487784 - | hypothetical protein YpsIP31758_2163 2487935 - 2488465 + | fimbrial protein TERM 2535 2488970 - 2488980 + G 73 -5.4 -4.58395 | opp_overlap 2488947 TGATCGTCAATAACC GACT AAA AGTC TTTTTCCGCCCTGCA YpsIP31758_2164 2488558 - 2489289 + | pili assembly chaperone TERM 2536 2490061 - 2490087 + G 71 -2.9 -4.87273 | GGTAGTGAAATTACG CTGGGTGAAAC CTTCA GTTCCGGCCAG TTTTTCTCCAGTCTT TERM 2537 2491675 - 2491664 - g 72 -5.8 -4.33105 | TAATCACCATTAAAA TGCC CGAT GGCA GCCAATTGCCTATGG YpsIP31758_2165 2489365 - 2491929 + | fimbrial usher protein YpsIP31758_2166 2492017 - 2493294 + | hypothetical protein TERM 2538 2493784 - 2493770 - g 78 -5.8 -4.66163 | opp_overlap 2493769 2493772 ATTTTCACTTAAAAA TATTGA TAA TCAATA CGTTATAATCGCGAA YpsIP31758_2167 2493291 - 2494031 + | pili assembly chaperone YpsIP31758_2168 2494474 - 2494698 + | hypothetical protein YpsIP31758_2169 2495850 - 2494708 - | carbohydrate ABC transporter ATP-binding protein YpsIP31758_2170 2496702 - 2495875 - | carbohydrate ABC transporter permease TERM 2539 2496083 - 2496066 - G 73 -8.5 -3.80174 | AGAGCGTTAGAACAA TCTGGAA TTCG TTCCAGA TAAAGAACAGTGTCA YpsIP31758_2171 2497537 - 2496695 - | carbohydrate ABC transporter permease TERM 2540 2497607 - 2497567 - R 70 -7.7 -3.6279 | gap 1, overlap 2497568 AAACCTGCGTAAGAA TTTCATTTCCGTCAGTGC GCAACT GCACTGACGGAAA-GCGA TTAACGGGACAACGC TERM 2541 2497608 - 2497568 - R 72 -9.9 -2.77192 | gap 1, overlap 2497567 AACCTGCGTAAGAAT TTCA-TTTCCGTCAGTGC GCAACT GCACTGACGGAAAGCGAT TAACGGGACAACGCT YpsIP31758_2172 2498876 - 2497608 - | carbohydrate ABC transporter periplasmic-binding protein YpsIP31758_2173 2499919 - 2498906 - | oxidoreductase, NAD-binding TERM 2542 2500157 - 2500123 - g 100 -15.3 -3.88232 | gap 1, overlap 2500149 2500152 TCGTTTACAGAACAA TGATGGTGCTTTTGAG CAAA CTCAAA-GCACCATCA CGGTGCGTAAGGTTC TERM 2543 2500163 - 2500149 - g 70 -7.8 -3.87149 | overlap 2500123 2500152 TTGAGCAAACTCAAA GCACCA TCA CGGTGC GTAAGGTTCGCTGTA YpsIP31758_2174 2500076 - 2500192 + | hypothetical protein YpsIP31758_2175 2500327 - 2500536 + | hypothetical protein YpsIP31758_2176 2501374 - 2500580 - | GntR family transcriptional regulator YpsIP31758_2177 2502343 - 2502777 + | hypothetical protein YpsIP31758_2178 2502789 - 2503358 + | hypothetical protein TERM 2544 2503450 - 2503479 + T 86 -11.7 -3.31428 | gap 1, overlap 2503446 2503449 2503447 CAAACAGGTACTCAG TAGCTCTGATT-AG TAA CTCAATCAGAGCTA TCTATTGTATTTAAA TERM 2545 2503802 - 2503781 - T 84 -10.1 -3.74693 | CGCCACTGTATTAAA GGTGATCGC TCAG GCGGTCACC AAACTCGATAATAAA YpsIP31758_2180 2506098 - 2505022 - | hypothetical protein TERM 2546 2505565 - 2505579 + g 70 -10 -3.1211 | AACGATCTCATTTCT CCACTC TTT GAGTGG TTCGATAGTCTCATG TERM 2547 2506044 - 2506074 + g 72 -11.2 -2.72511 | overlap 2506043 CACTTTCCTTATATT GTTCCCGAATTCTT TGT AAGTATCCGGGAAC CTTTGGGGGGATGCA YpsIP31758_2181 2506454 - 2506164 - | hypothetical protein TERM 2548 2506308 - 2506318 + g 70 -2.4 -4.90296 | overlap 2506290 GTTTGCCAGTTTTGG CCGG CCA CGGG TTTTTATCACCTTTT TERM 2549 2506986 - 2507002 + G 83 -7.2 -4.8048 | overlap 2506982 AATTGGTTAACCCTG CGCGCC GGGCG GGTGCG TTTTTGGTCTGCGCC YpsIP31758_2183 2506842 - 2507096 + | baseplate assembly protein V, truncation YpsIP31758_2184 2507093 - 2507392 + | baseplate assembly protein W YpsIP31758_2185 2507409 - 2507696 + | hypothetical protein TERM 2550 2508170 - 2508185 + G 73 -3.3 -4.89233 | GTTAACAATGCTCAC TACTC CCCTTT GAGTA TTTTTGGTGTTGGTA TERM 2551 2508477 - 2508497 + G 71 -7.5 -4.05747 | overlap 2508478 2508487 GACATTTCAGATTGC ATCCCATCG GCC CGATGGGGG TTTCTATGGGGTGTA TERM 2552 2508478 - 2508496 + G 74 -11 -3.02966 | overlap 2508477 2508487 ACATTTCAGATTGCA TCCCATCG GCC CGATGGGG GTTTCTATGGGGTGT YpsIP31758_2186 2508131 - 2508649 + | hypothetical protein TERM 2553 2508930 - 2508962 + F 71 -10 -2.62614 | overlap 2508929 2508946 2508950 CACTTTCCTGTTAAT GGTAACCACTCTAT ATCGC GTAAAGTGGTTACC CGTTTTATAGTTTTC YpsIP31758_2187 2509054 - 2510223 + | tail sheath protein YpsIP31758_2188 2510235 - 2510750 + | tail tube protein TERM 2554 2510757 - 2510776 + F 90 -11.4 -3.6512 | opp_overlap 2510756 2510753 GGCCTGTAATATCAC GGTGCGGA TAAC TCCGCGCC TTTACCCCTTATTTA YpsIP31758_2189 2510804 - 2511151 + | tail protein YpsIP31758_2190 2511163 - 2511285 + | tail protein TERM 2555 2511677 - 2511661 - f 83 -8.7 -4.07687 | AGCCGCCCTGCAAAA TAGCGGC GTT GCCACTA ATCGACTGGGACAAG TERM 2556 2511843 - 2511833 - f 73 -8.2 -3.64162 | opp_overlap 2511828 2511840, overlap 2511826 AGCAATCAGCGCAAA GCGG TAG CCGC CGGGCTGGGTTATAC TERM 2557 2513186 - 2513197 + F 70 -7.2 -3.78597 | opp_overlap 2513186 TCGCCAGTGAAATCA GCCG TCAG CGGC TTTACGTTACTCGGT TERM 2558 2513728 - 2513689 - f 70 -5.7 -4.37658 | overlap 2513690 2513693 2513712 2513715 AACGCTCTGACAAAA CCCA-GGCACTGGCGCAGG CAAA CCCA-GCCACTGCCGCGGG CCCGGGTAACTACGG TERM 2559 2513899 - 2513929 + F 77 -10.5 -3.13432 | gap 2, opp_overlap 2513908 CACAGGTCACCAGCC GCCGCAACACCGCCG CTA TGGCG--GTTGCGGC TTCCATGCTATTCAG YpsIP31758_2192 2514206 - 2514670 + | phage P2 GpU TERM 2560 2514962 - 2514980 + G 73 -7.4 -4.25283 | CGGATAAGCTGACTG TTCGCGCT CGC AGTGCGGA TTTTCGTGAAACGCT YpsIP31758_2193 2514667 - 2515761 + | late control gene D protein YpsIP31758_2194 2515836 - 2516051 + | phage transcriptional activator, Ogr/Delta TERM 2561 2516087 - 2516098 + F 100 -7.2 -6.09133 | TACCCGACGCTCATC CCGC TTTT GCGG TTTTTTTTTCGCCTA TERM 2562 2516227 - 2516214 - f 100 -9.5 -6.02919 | CCAGAAACAAAAAAA CCGCC TCTC GGCGG TTAACGACATACTCG YpsIP31758_2195 2516836 - 2517270 + | hypothetical protein YpsIP31758_2196 2517282 - 2517851 + | hypothetical protein TERM 2563 2517943 - 2517972 + T 86 -11.7 -3.31428 | gap 1, overlap 2517939 2517942 2517940 CAAACAGGTACTCAG TAGCTCTGATT-AG TAA CTCAATCAGAGCTA TCTATTGTATTTAAA YpsIP31758_2197 2519047 - 2518391 - | hypothetical protein YpsIP31758_2198 2520255 - 2519047 - | tail collar domain-containing protein TERM 2564 2519912 - 2519929 + g 71 -2.7 -4.86731 | AAGTGATTGGCTGTC TGCAAAT AGGT ATTGGCA TTTTCTTTACGCCAC YpsIP31758_2199 2520911 - 2520267 - | hypothetical protein YpsIP31758_2200 2522103 - 2520904 - | hypothetical protein TERM 2565 2521317 - 2521331 + g 71 -4.2 -4.78572 | overlap 2521318 TGTTGTAGCGGTTCA GCCC GCAGCCG GGGC TTTTATTGGTTGCGA YpsIP31758_2201 2522453 - 2522103 - | hypothetical protein TERM 2566 2522493 - 2522474 - R 100 -9.2 -5.38054 | CTCCAGAAACAAAAA GCCCCAGC ATTA GCCAGGGC GATAACAGGTAGGAG YpsIP31758_2202 2523204 - 2522527 - | hypothetical protein TERM 2567 2523139 - 2523159 + g 71 -6.9 -4.17023 | overlap 2523143 GGGTATACCGATCAT CAGATCATG TAT CATGGTTTG TTTTAACATCATTAG TERM 2568 2523143 - 2523155 + g 71 -4.1 -4.67048 | overlap 2523139 ATACCGATCATCAGA TCATG TAT CATGG TTTGTTTTAACATCA YpsIP31758_2203 2524105 - 2523212 - | hypothetical protein TERM 2569 2523368 - 2523384 + g 82 -12.3 -3.20901 | opp_overlap 2523367 ACCACTGAAGTTAAT CGTCCAG AAA CTGGACG TTACGTTAATCACAT TERM 2570 2523496 - 2523510 + g 73 -10 -3.35798 | TCTTCGCAGTTATCT CATGGG TTG CCCATG TTCTGGCTGCCCCCT YpsIP31758_2204 2524388 - 2524098 - | hypothetical protein YpsIP31758_2205 2525056 - 2524388 - | hypothetical protein YpsIP31758_2206 2526948 - 2525056 - | lysozyme TERM 2571 2525588 - 2525575 - G 73 -5.3 -4.51378 | ACTGATATCATAAAA TTGGT CACC ACCAA ACAACGTGTTATAAC TERM 2572 2526956 - 2526942 - G 100 -8.5 -5.42862 | opp_overlap 2526942 ATAGGCGTAAAAAAA CCCGC ACCTA GCGGG TTCCTTGAGTCTGCT YpsIP31758_2207 2527757 - 2527623 - | hypothetical protein YpsIP31758_2208 2528183 - 2528070 - | hypothetical protein TERM 2573 2528150 - 2528119 - GH 72 -9.4 -3.08991 | overlap 2528118 2528122 ATGCCCTGAATAAAC GAAGCCCCAACCGC TTGA ACAGTCAGGGCCTC TAATTTGTCCGCACC TERM 2574 2528618 - 2528605 - gR 87 -5.3 -5.37345 | CCTAAGCAGAAAAAA TCATC ATTT GATGA GCGTACGCCACTCCG YpsIP31758_2209 2528182 - 2529087 + | hypothetical protein TERM 2575 2529114 - 2529095 - TR 72 -9.2 -3.14708 | overlap 2529093 2529091 GTAACTAAAATCACA CCGGCGCA CGGA CGCGCCAG AAAGCCGAAAGTTAA YpsIP31758_2211 2529901 - 2529677 - | hypothetical protein TERM 2576 2529855 - 2529875 + g 91 -3.9 -5.63236 | CAGTTTTCGACATAG CCCCCAG CGGGTAA CTGGCGG TTTTTATTTTTCCAT YpsIP31758_2212 2530559 - 2529909 - | hypothetical protein TERM 2577 2530595 - 2530621 + H 86 -11.6 -3.30459 | opp_overlap 2530592 2530591 2530595, overlap 2530590 2530588 TGCTGACAAAACGAG GCCCTGATTGTT ACT AGCAGTCGGGGC TTCACTATTTTGATT TERM 2578 2530694 - 2530707 + H 71 -2.4 -5.20333 | AATGGCTGAGTTCAA CGAA ATTCCA TTCG TTTTTCTTCTCGGTA YpsIP31758_2213 2530850 - 2531173 + | putative transcriptional regulator YpsIP31758_2214 2531255 - 2531710 + | hypothetical protein YpsIP31758_2215 2531905 - 2531792 - | hypothetical protein TERM 2579 2531972 - 2531989 + r 73 -2.6 -5.1101 | overlap 2531973 TACACGGGAGGGTTG TGCGGG TTGTTT TCCGCG TTTTTTCCCTCGTCG YpsIP31758_2216 2532345 - 2531956 - | hypothetical protein YpsIP31758_2217 2532752 - 2532348 - | hypothetical protein YpsIP31758_2218 2533916 - 2532759 - | hypothetical protein YpsIP31758_2219 2534460 - 2533900 - | hypothetical protein YpsIP31758_2220 2534879 - 2534460 - | hypothetical protein YpsIP31758_2221 2535538 - 2534882 - | hypothetical protein YpsIP31758_2222 2536737 - 2535538 - | hypothetical protein YpsIP31758_2223 2537624 - 2536749 - | hypothetical protein YpsIP31758_2224 2538942 - 2537557 - | HI1409 family phage-associated protein YpsIP31758_2225 2540588 - 2538945 - | phage uncharacterized protein TERM 2580 2540057 - 2540044 - G 78 -8.1 -4.38712 | overlap 2540053 TCCAGCCCGACAAAA CCGGA GAAA TCCGG TCCCGGATAACCCGC TERM 2581 2540693 - 2540670 - H 76 -6.8 -4.45083 | opp_overlap 2540670 CCGATAGGGACAAAA TGACATTTGT AATT ACAGATGTCA TTACGTAAGTGAGGT YpsIP31758_2226 2540715 - 2540954 + | bifunctional antitoxin/transcriptional repressor RelB YpsIP31758_2227 2540944 - 2541228 + | addiction module antitoxin YpsIP31758_2228 2542255 - 2541239 - | hypothetical protein TERM 2582 2542073 - 2542101 + g 95 -12.5 -4.10855 | TTTAGTCTTGGTTCG CAGGTTCGCACAG GAA TTATGCGAACCTG TTTTGCGAACCTTTT YpsIP31758_2229 2542519 - 2542259 - | hypothetical protein YpsIP31758_2230 2543136 - 2542522 - | hypothetical protein YpsIP31758_2231 2543642 - 2543133 - | ParB family protein YpsIP31758_2232 2543824 - 2543967 + | hypothetical protein YpsIP31758_2233 2544101 - 2544319 + | hypothetical protein YpsIP31758_2234 2544364 - 2544603 + | hypothetical protein TERM 2583 2544604 - 2544629 + T 100 -19.1 -3.62046 | opp_overlap 2544604 GAAGCTAGGGGATAA CCTCAGGCCAC ACAG GTGGCCTGAGG TTATTGACAAAGTGC TERM 2584 2544629 - 2544604 - T 100 -19.1 -3.33969 | opp_overlap 2544604 GAAGCTAGGGGATAA CCTCAGGCCAC ACAG GTGGCCTGAGG TTATTGACAAAGTGC TERM 2585 2544702 - 2544728 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 2544691, overlap 2544697 2544703 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGG-CG CTTTACTCCTCTGCC TERM 2586 2544703 - 2544729 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 2544691, overlap 2544697 2544702 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGGCGC TTTACTCCTCTGCCT TERM 2587 2544787 - 2544812 + T 93 -9.7 -4.41047 | overlap 2544792 GGGGTTTGTCAGCAG TCTGAGGCCAC ACAG GTGGCCTTTGA TTTTCATTCAGAACT TERM 2588 2544792 - 2544807 + T 100 -10.4 -4.27062 | overlap 2544787 TTGTCAGCAGTCTGA GGCCAC ACAG GTGGCC TTTGATTTTCATTCA YpsIP31758_2235 2544990 - 2544820 - | hypothetical protein YpsIP31758_2236 2545651 - 2545238 - | hypothetical protein YpsIP31758_2237 2546146 - 2546373 + | prevent-host-death family protein YpsIP31758_2238 2546397 - 2546750 + | RelE/ParE family plasmid stabilization system protein YpsIP31758_2239 2547355 - 2546909 - | phage antitermination protein Q YpsIP31758_2240 2548238 - 2547645 - | hypothetical protein TERM 2589 2547851 - 2547839 - G 85 -7.7 -4.74103 | CGGGTAATTCAAAAA GGTCA TAG TGACC AGCTTCGACCGTTAC YpsIP31758_2241 2550505 - 2549765 - | hypothetical protein YpsIP31758_2242 2550607 - 2550783 + | hypothetical protein YpsIP31758_2243 2551181 - 2550939 - | hypothetical protein YpsIP31758_2244 2552644 - 2551271 - | replicative DNA helicase YpsIP31758_2245 2553684 - 2552641 - | hypothetical protein TERM 2590 2553275 - 2553319 + g 78 -9.3 -4.08767 | opp_overlap 2553264 2553283, overlap 2553260 2553282 2553283 2553288 AACATTTGGTCATTT TGACCACATGGGATTTGGTCA TTC TGACCAGTTCCCAATTTGTCA TTTTGACCAGATGCA TERM 2591 2553282 - 2553312 + g 80 -9 -4.208 | opp_overlap 2553283, overlap 2553260 2553275 2553283 2553288 GGTCATTTTGACCAC ATGGGATTTGGTCA TTC TGACCAGTTCCCAA TTTGTCATTTTGACC TERM 2592 2553311 - 2553283 - G 71 -10.3 -2.79183 | opp_overlap 2553260 2553282 2553275 2553283 2553288 GTCATTTTGACCACA TGGGATTTGGTCA TTC TGACCAGTTCCCA ATTTGTCATTTTGAC TERM 2593 2553283 - 2553311 + g 82 -12.5 -3.11757 | opp_overlap 2553283, overlap 2553260 2553282 2553275 2553288 GTCATTTTGACCACA TGGGATTTGGTCA TTC TGACCAGTTCCCA ATTTGTCATTTTGAC YpsIP31758_2246 2554392 - 2553928 - | hypothetical protein YpsIP31758_2247 2554632 - 2554426 - | hypothetical protein TERM 2594 2554876 - 2554853 - g 76 -8.2 -4.09805 | gap 1, overlap 2554854 TCAGGAATAACTAAA CCTGATGGAGA AAA CCTCCATC-GG CTTGCACAAACCCTT YpsIP31758_2248 2554676 - 2555386 + | repressor protein C2 YpsIP31758_2249 2555727 - 2555963 + | hypothetical protein YpsIP31758_2250 2555953 - 2556969 + | phage integrase family site specific recombinase TERM 2595 2556981 - 2556966 - T 100 -6.2 -5.63103 | CGGTAATCAAAAAAA GTGAAT TTTT ATTCAC CCTCCACAAAACATG TERM 2596 2557062 - 2557049 - T 100 -9.5 -5.71983 | TTAATCACAAAAAAA CCGCC TCTC GGCGG TTAACGACATACTCG TERM 2597 2557149 - 2557169 + T 76 -10.5 -2.90714 | opp_overlap 2557148, overlap 2557152 CGCACAGCCATAAGC CGAGGGATT TTA AATCCCTTG TGTCTACCGATTTCA TERM 2598 2557152 - 2557166 + T 73 -8.6 -3.5947 | opp_overlap 2557148, overlap 2557149 ACAGCCATAAGCCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 2599 2557364 - 2557380 + T 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA pgsA 2558099 - 2557551 - | phosphatidylglycerophosphate synthetase uvrC 2559990 - 2558158 - | excinuclease ABC subunit C uvrY 2560639 - 2559983 - | response regulator TERM 2600 2560441 - 2560428 - G 73 -5.3 -4.57569 | opp_overlap 2560428 2560426, overlap 2560436 GTATCCGGCGAAAAA CGTAA AATT TTACG TGTTGCTTCCAACCC TERM 2601 2560899 - 2560889 - H 78 -4 -5.14477 | CATACATTCAAAAAA CTAA TTA TTAG CATTAGATAAGTTAA TERM 2602 2561415 - 2561396 - g 71 -8.6 -3.64822 | gap 1, overlap 2561400 ACTCTGTTACTGAAA GCGATCGGC CAA GCCGAT-GC TGGGAAAGTAATCTT YpsIP31758_2254 2561303 - 2561527 + | hypothetical protein YpsIP31758_2255 2561655 - 2561996 + | GlpM protein YpsIP31758_2256 2562278 - 2562024 - | hypothetical protein TERM 2603 2562593 - 2562567 - R 90 -5.9 -5.54894 | gap 1 AACTGATGAAAAAAA CAGCCGCA-CAG TGAA CTAATACGGCTG TTATTATTATATAGA YpsIP31758_2257 2563170 - 2562619 - | Ail/Lom family protein YpsIP31758_2258 2563319 - 2563197 - | hypothetical protein TERM 2604 2565528 - 2565539 + G 73 -2.2 -5.00895 | opp_overlap 2565517 AATCCATCTACAAAA TGCC AGCC GGTA TTTTTATGTCATGGG TERM 2605 2565562 - 2565574 + G 78 -6.2 -4.73614 | GTCATGGGTTTGTAT GGCG TTTTT CGCC TTTGTTTTGGTACTG cycA 2564294 - 2565709 + | D-alanine/D-serine/glycine permease TERM 2606 2565721 - 2565755 + T 100 -17.4 -3.59738 | opp_overlap 2565726, overlap 2565726 ATAACCACAGTGTGA TAAAACGGTGCCAGAG GTG TTCTGGTACCGTTTTA TTTCCCCCTCTAATC TERM 2607 2565750 - 2565726 - T 93 -10 -4.39426 | opp_overlap 2565726 2565721 CACAGTGTGATAAAA CGGTGCCAGA GGTGT TCTGGTACCG TTTTATTTCCCCCTC TERM 2608 2565726 - 2565750 + T 100 -12.9 -4.87803 | opp_overlap 2565726, overlap 2565721 CACAGTGTGATAAAA CGGTGCCAGAG GTG TTCTGGTACCG TTTTATTTCCCCCTC YpsIP31758_2260 2567013 - 2565835 - | kelch domain-containing protein TERM 2609 2567329 - 2567374 + H 80 -9.9 -3.69684 | gap 1, opp_overlap 2567337 TGCTGATTAGCTTAT GGTTAATAGGTGTCATTAGCCG CGA CGACTAATGACATC-ATCAGCC TTATTCAATAAATTT TERM 2610 2567367 - 2567337 - H 100 -13.4 -3.04263 | opp_overlap 2567329 AGCTTATGGTTAATA GGTGTCATTAGCCG CGA CGACTAATGACATC ATCAGCCTTATTCAA wrbA 2567407 - 2568006 + | TrpR binding protein WrbA TERM 2611 2568085 - 2568063 - T 91 -7.7 -4.8667 | opp_overlap 2568063 2568061 2568059 TAGACGTCATAAAAA GCACCGC GCGATGATG GCGGTGC TGTATTTTAAGCTTC YpsIP31758_2262 2569396 - 2568092 - | Dyp-type peroxidase family protein TERM 2612 2568578 - 2568593 + g 78 -9 -4.00042 | TCCCCCTACCGCCCA TGCAGG CTCG CCTGCA TTATTTGATACCCAG TERM 2613 2569338 - 2569323 - G 73 -7.5 -4.20136 | overlap 2569324 ATCCCTAAAATTAAA CGCCG ACGTGA CGGCG ACACCGCCTCATCAT TERM 2614 2569363 - 2569383 + g 100 -12.5 -4.63586 | overlap 2569353 2569364 CATCATCCGGTTGAT ACGGCCCGA ATT TCGGGCCGG TTTTGTCTCTCATGT TERM 2615 2569364 - 2569382 + g 100 -16 -3.37067 | overlap 2569353 2569363 ATCATCCGGTTGATA CGGCCCGA ATT TCGGGCCG GTTTTGTCTCTCATG YpsIP31758_2263 2570537 - 2569407 - | hypothetical protein TERM 2616 2570047 - 2570069 + g 76 -8.4 -4.08485 | AGTGCCAGATCCCCA GCCTTCACTG CAT CGGTGAACGC TTTGGTTTGGCTGAC efeU 2571415 - 2570567 - | ferrous iron permease EfeU TERM 2617 2571726 - 2571697 - R 73 -8.6 -3.59698 | opp_overlap 2571699 2571701, overlap 2571699 TGATTTTACATACAA GATAGCCCCCTG TTATGG CAGGAGGCTATG TGTAGTTAAACGTAT TERM 2618 2571699 - 2571724 + r 73 -9.7 -3.00476 | opp_overlap 2571697 2571699, overlap 2571701 ATTTTACATACAAGA TAGCCCCCTGT TATG GCAGGAGGCTA TGTGTAGTTAAACGT TERM 2619 2571724 - 2571699 - R 81 -11.2 -3.37466 | opp_overlap 2571699 2571701, overlap 2571697 ATTTTACATACAAGA TAGCCCCCTG TTATGG CAGGAGGCTA TGTGTAGTTAAACGT putP 2573250 - 2571766 - | sodium/proline symporter TERM 2620 2571869 - 2571855 - G 74 -4.2 -4.91109 | overlap 2571857 GGCTGACGACAAAAA TAGCCA AAC TGGCAA ACAAGAAGCCTGGAA YpsIP31758_2266 2573450 - 2573280 - | hypothetical protein YpsIP31758_2267 2573646 - 2573795 + | hypothetical protein TERM 2621 2574255 - 2574244 - g 76 -2.2 -5.26875 | gap 1, overlap 2574245 TGCGTAATCAAAAAA GTGCC CAT GGC-C GCGCGGGCATGGTAC TERM 2622 2576049 - 2576072 + G 73 -9.6 -3.28745 | opp_overlap 2576030, overlap 2576052 AGTAATGCCATCGCC GAAGTCCGTG AAGC CGTGGACTTC TTGCATTATTACGCC putA 2573823 - 2577794 + | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 2623 2577867 - 2577880 + F 83 -9.5 -4.07568 | opp_overlap 2577867 CGGTTTATCAATTAA GGCCC TTCG GGGCC TTTTGCCAACCAACA TERM 2624 2577880 - 2577867 - f 74 -9.5 -3.39895 | opp_overlap 2577867 CGGTTTATCAATTAA GGCCC TTCG GGGCC TTTTGCCAACCAACA YpsIP31758_2269 2578348 - 2578641 + | hypothetical protein YpsIP31758_2270 2578641 - 2579012 + | hypothetical protein TERM 2625 2579051 - 2579027 - T 100 -12.2 -3.78312 | opp_overlap 2579025 AAATTATCTAGCAAA TTGGGGACCA TACCG TGGCCCCCAA CATATTAAAAATGCC TERM 2626 2579147 - 2579133 - T 88 -10 -4.18018 | opp_overlap 2579127 TTTTGCCACCGAAAA CCACTG AAT CAGTGG TTGAGGTTATTGACA YpsIP31758_2271 2579238 - 2579113 - | hypothetical protein TERM 2627 2579226 - 2579252 + g 71 -10.1 -2.88849 | gap 1, opp_overlap 2579215, overlap 2579221 2579227 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2628 2579227 - 2579253 + g 82 -10.1 -3.82218 | gap 1, opp_overlap 2579215, overlap 2579221 2579226 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YpsIP31758_2272 2580065 - 2579304 - | putative amino-acid ABC transporter ATP-binding protein YecC YpsIP31758_2273 2580730 - 2580068 - | amino acid ABC transporter, permease protein TERM 2629 2580711 - 2580692 - G 100 -12.2 -5.06816 | opp_overlap 2580691 ACCCTTCAATAAAAA TGGTGCTG AATC CAGCACCA ATTGCATACTTTCTG fliY 2581530 - 2580730 - | cystine transporter subunit YpsIP31758_2276 2581547 - 2581669 + | hypothetical protein dcyD 2582646 - 2581654 - | D-cysteine desulfhydrase YpsIP31758_2277 2582632 - 2582757 + | hypothetical protein fliZ 2583444 - 2582935 - | protein FliZ TERM 2630 2583406 - 2583421 + g 73 -2.4 -5.09225 | opp_overlap 2583407, overlap 2583407 ATAATCTTTTAAATA ACGGCT CAGC GGCCGC TTTTTTAACTGGAGT YpsIP31758_2279 2583596 - 2583444 - | hypothetical protein fliA1 2584401 - 2583679 - | flagellar biosynthesis sigma factor TERM 2631 2584573 - 2584583 + r 81 -5.4 -5.10064 | CCTTGAAGCGCATTC TCAG CGT CTGA TTTTTATCTGTTCCC TERM 2632 2584719 - 2584704 - R 91 -8.2 -4.69027 | overlap 2584694 AAACTGAGGTAAAAA CCCCGC CGGA GCAGGG TTGGGATAAGGGTAT YpsIP31758_2281 2585857 - 2584748 - | flagellin YpsIP31758_2282 2585873 - 2585989 + | hypothetical protein fliD2 2586154 - 2587554 + | flagellar capping protein TERM 2633 2587665 - 2587679 + G 81 -12.8 -2.71144 | opp_overlap 2587674, overlap 2587665 TGATGCTGTTCGATG GGGCGC AAA GCGCCC TGATTCGCGCACGTA fliS2 2587565 - 2587963 + | flagellar protein FliS TERM 2634 2588264 - 2588277 + G 70 -9.5 -3.25729 | opp_overlap 2588247 2588263 GGTGGGGCAATCTAC CCGCC AACA GGCGG TTAATCGTACTTATG fliT 2587974 - 2588336 + | flagellar biosynthesis protein FliT TERM 2635 2588545 - 2588558 + F 82 -3.1 -5.46657 | TTATAGTCGAAGTGG CTTGC TATG GTAAG TTTTTTATTAAAATA YpsIP31758_2286 2588637 - 2589512 + | AraC family transcriptional regulator TERM 2636 2589678 - 2589689 + F 70 -5.8 -4.40561 | opp_overlap 2589687 CTTTTAGATATTTTG CGCT TTAA AGCG TTCTTTTTAAGGCCG TERM 2637 2590212 - 2590224 + G 100 -4.7 -5.80817 | overlap 2590213 CCGTATACAGCGCTT ACCCC AAT GGGGA TTTTTTTATGTTGCG TERM 2638 2590213 - 2590223 + G 76 -8.2 -4.06863 | overlap 2590212 CGTATACAGCGCTTA CCCC AAT GGGG ATTTTTTTATGTTGC TERM 2639 2590602 - 2590591 - g 70 -2.2 -4.90778 | opp_overlap 2590596, overlap 2590592 2590595 TTTAGCTAAACAAAA CCTA CCAC CAGG CAGCCAGGCGATTAT TERM 2640 2591740 - 2591727 - g 93 -6.7 -5.38549 | CTGAAATAACAAAAA TGCTC GCCA GAGCA GCGATGGAGAGTAAA YpsIP31758_2287 2589866 - 2592820 + | HAMP domain-containing protein YpsIP31758_2288 2592981 - 2593592 + | base excision DNA repair protein TERM 2641 2593758 - 2593743 - T 80 -6.1 -4.8066 | opp_overlap 2593743 AAGATAACGCAAAAA CCCAC AGCTAA GTGGG TTGATATCTCATACG TERM 2642 2594059 - 2594045 - T 74 -10 -3.14931 | opp_overlap 2594058, overlap 2594058 GTGATTCTGGATTAA GCTCTC GAT GAGAGC AGCAGACAGTTCGAA fliE1 2595277 - 2594960 - | flagellar hook-basal body protein FliE TERM 2643 2595760 - 2595778 + G 78 -11 -3.3573 | overlap 2595749 TTGTCGCCTTGATGC TCTGGGCT AAA AGCCCGGA TTATCGCGTCCTTTA fliF1 2595624 - 2597336 + | flagellar MS-ring protein fliG1 2597333 - 2598325 + | flagellar motor switch protein G fliH2 2598318 - 2599034 + | flagellar assembly protein H fliI1 2599034 - 2600452 + | flagellum-specific ATP synthase fliJ1 2600563 - 2601009 + | flagellar biosynthesis chaperone fliK1 2601006 - 2602364 + | flagellar hook-length control protein YpsIP31758_2296 2602389 - 2602511 + | hypothetical protein YpsIP31758_2297 2602522 - 2602638 + | hypothetical protein fliL 2602631 - 2603101 + | flagellar basal body-associated protein FliL TERM 2644 2603438 - 2603428 - g 77 -8.2 -4.18018 | opp_overlap 2603434 CTGGTGCATCTAAAA CCGC TAC GCGG TACTGCGCTATTCGT fliM 2603107 - 2604108 + | flagellar motor switch protein FliM TERM 2645 2604217 - 2604198 - g 75 -3.4 -5.1485 | overlap 2604202 CAAGCAACAGAAAAA CCCACGGC CACA ACCGAAGG CGTCTTTAAATCGCT fliN1 2604105 - 2604521 + | flagellar motor switch protein FliN fliO 2604521 - 2605057 + | flagellar protein fliO TERM 2646 2605853 - 2605865 + G 73 -3.3 -4.89339 | AATTGTTACTGGGTT CACTG GCA CAGAG TTTTTATAGCTGATT fliP2 2605054 - 2605878 + | flagellar biosynthesis protein FliP fliQ1 2605984 - 2606253 + | flagellar biosynthesis protein FliQ TERM 2647 2606970 - 2606993 + G 79 -10.4 -3.61715 | opp_overlap 2606979 CCATTGTTAGCCCCT TTCACCGAAC ACCT GTTTGGTGAA TTCTTCGACCGCCTG fliR1 2606256 - 2607038 + | flagellar biosynthesis protein FliR YpsIP31758_2305 2607472 - 2607891 + | hypothetical protein TERM 2648 2607916 - 2607931 + T 71 -8.2 -3.53343 | overlap 2607925 2607925 2607925 TGTCGCTGCTTATCG CCCCGT TTCG GCGGGG TTTACCCCCCCCCTT TERM 2649 2607925 - 2607944 + T 74 -6.3 -4.41548 | overlap 2607916 2607925 2607925 TTATCGCCCCGTTTC GGCGGGG TTTACC CCCCCCC TTTTCTGACCTCTCG YpsIP31758_2306 2609110 - 2608151 - | PfkB family kinase TERM 2650 2608463 - 2608447 - G 73 -7.9 -4.11216 | CCCCCATTTTGAAAA CGGTGTG GCC CACCCCG CGGTTCAGGAAAAAC YpsIP31758_2307 2610181 - 2609159 - | carbohydrate ABC transporter permease YpsIP31758_2308 2611761 - 2610184 - | carbohydrate ABC transporter ATP-binding protein YpsIP31758_2309 2612822 - 2611827 - | carbohydrate ABC transporter periplasmic-binding protein TERM 2651 2611953 - 2611967 + g 85 -5.6 -5.24129 | CACCCCCAGATTCAT CCCATC AGT GAGGGG TTTTTTATCGAGCAG TERM 2652 2612011 - 2611985 - G 93 -14.4 -3.4252 | opp_overlap 2611982 2611981 2611979 TTTTATCGAGCAGAA GCTTGGCGACGG TAT CCATCGCCAGGC TGGCATCTTTAGGAT YpsIP31758_2310 2613926 - 2612865 - | carbohydrate ABC transporter permease YpsIP31758_2311 2616140 - 2614074 - | short chain dehydrogenase YpsIP31758_2312 2616358 - 2617359 + | sugar-binding domain-containing protein flgL1 2618368 - 2617388 - | flagellar hook-associated protein FlgL TERM 2653 2617738 - 2617748 + g 83 -4 -5.40072 | GTACCGTATCAATGG TATC AAA GATA TTTTTTTCCGCAGCA flgK1 2620171 - 2618507 - | flagellar hook-associated protein FlgK TERM 2654 2618748 - 2618733 - G 71 -8.2 -3.76402 | opp_overlap 2618743 ACGTTACTGACTAAA CCGGCG TAAG CACCGG ACAAGGTGGTTTTAC TERM 2655 2619714 - 2619731 + g 73 -9.9 -3.38178 | opp_overlap 2619714 CCGTCATCCATATCA CGCAGAT ATTT ATCTGCG TTCTGGAATTGGTTC YpsIP31758_2315 2620438 - 2620319 - | hypothetical protein flgJ 2621807 - 2620863 - | peptidoglycan hydrolase flgI2 2622916 - 2621807 - | flagellar basal body P-ring protein flgH1 2623662 - 2622931 - | flagellar basal body L-ring protein TERM 2656 2623727 - 2623761 + r 72 -9.8 -2.74144 | overlap 2623726 AGACCTATTATGCTG CGGCGATCAGGGGGCA TGA TGCCCCCCGAAAGCAG GTTTACAGCTGAGCC flgG2 2624546 - 2623764 - | flagellar basal body rod protein FlgG TERM 2657 2624182 - 2624166 - G 70 -9.5 -3.18264 | GCCTGCAGTGACTAA TTGACCA TTC TGGTCAA CCTGGAAAGAGCCAT flgF2 2625327 - 2624572 - | flagellar basal body rod protein FlgF flgE1 2626635 - 2625349 - | flagellar hook protein FlgE TERM 2658 2626418 - 2626394 - G 80 -4.9 -5.1287 | overlap 2626395 2626396 TGCATACGGAAAAAA CCGTTCTGGCT GAT AGCCAGATCCA AACGACGATTAGTGG flgD1 2627523 - 2626837 - | flagellar basal body rod modification protein flgC1 2627942 - 2627538 - | flagellar basal body rod protein FlgC TERM 2659 2627736 - 2627719 - G 70 -7.7 -3.88498 | overlap 2627720 GGCTGATACACCAAA CGATCCG GTGA CGGATCA TCAACTATCTGAGCA flgB2 2628361 - 2627948 - | flagellar basal body rod protein FlgB flgA 2628600 - 2629298 + | flagellar basal body P-ring biosynthesis protein FlgA YpsIP31758_2326 2629472 - 2629302 - | hypothetical protein flgM 2629449 - 2629751 + | anti-sigma28 factor FlgM flgN 2629770 - 2630210 + | flagella synthesis protein FlgN TERM 2660 2630251 - 2630282 + TF 83 -11 -3.51161 | gap 1, opp_overlap 2630251, overlap 2630254 ATCCTTTTAAAAAAA CAAC-GCCGCTCA ATTAACC TGAGCGGCCGTTG TTCTCTGGACGTTTG TERM 2661 2630282 - 2630251 - Tf 100 -11.7 -5.40474 | gap 1, opp_overlap 2630251 2630254 ATCCTTTTAAAAAAA CAAC-GCCGCTCAA TTAAC CTGAGCGGCCGTTG TTCTCTGGACGTTTG YpsIP31758_2329 2633216 - 2630391 - | invasin YpsIP31758_2330 2633215 - 2633358 + | hypothetical protein YpsIP31758_2331 2633728 - 2633850 + | hypothetical protein flhE 2634379 - 2633957 - | flagellar protein FlhE flhA1 2636457 - 2634379 - | flagellar biosynthesis protein FlhA TERM 2662 2635450 - 2635463 + g 74 -6.7 -4.42062 | GGGTGCTTCCACCGC CACAG ACTG CTGTG TTTGTTTACCACGTA TERM 2663 2635896 - 2635908 + g 74 -2.6 -5.17576 | CAGCCTCTTGCGTAA CGTC AGAGC GGCG TTTTTTCGCTTCATC TERM 2664 2636179 - 2636191 + g 74 -9.1 -3.78775 | opp_overlap 2636178 2636175 CATCAGAATAATACG CGTGG AAG CCACG TTTAGTGATAGACGC flhB1 2637617 - 2636457 - | flagellar biosynthesis protein FlhB TERM 2665 2636861 - 2636894 + g 76 -9.6 -3.64103 | gap 2 CCATCATCCGACGGC GGGC-CAT-CGCCCGC TGCT GCTGGCGAATGCGCCC TTTCACATGTGGGTC TERM 2666 2638411 - 2638398 - g 76 -2.3 -5.27476 | overlap 2638399 TTTAAGAAAACAAAA TTCCC ATTT GGGAT GTCGCTACCTACATG YpsIP31758_2335 2638149 - 2638607 + | hypothetical protein YpsIP31758_2336 2638601 - 2638927 + | hypothetical protein TERM 2667 2638934 - 2638951 + T 75 -8.4 -3.89336 | opp_overlap 2638933 TATGACTGAAATAGG CTGGGC TTAATT GCCCAG TTTCGCTTTGGTTAA TERM 2668 2639064 - 2639047 - T 70 -5.5 -4.57073 | CAGTTCGCCCAAAAA CGGCTTG GCCA CAAGTCG ATGAAAATGACTCAT TERM 2669 2639221 - 2639194 - T 100 -7.8 -5.77856 | AATAAATTAAAAAAA GACCGAATACGA TTCC TGATATTCGGTC TAGGGAAATGGCTCT YpsIP31758_2337 2639791 - 2639450 - | hypothetical protein copD 2640772 - 2639888 - | copper resistance protein D TERM 2670 2640723 - 2640697 - G 81 -12.4 -3.03903 | overlap 2640699 AAAAGGCGGTGAATA CAGTGATGCCAA ACA TCAGCATCACTG CCATAAAGTGCAGAA copC 2641161 - 2640775 - | copper resistance protein CopC YpsIP31758_2340 2641393 - 2641527 + | hypothetical protein TERM 2671 2641516 - 2641504 - T 75 -3.3 -5.18715 | overlap 2641505 AGAAAAACAAGAAAA GGCGA GGA TCGCG GGGAGGGATAGGCAA TERM 2672 2641567 - 2641539 - T 82 -8.1 -4.47456 | ATAGGCAACAACAAA GCCGCCGTACC CAATAAT AGTACCGCGGC GAATATTTTCTCAAT YpsIP31758_2341 2642097 - 2641588 - | ferritin family protein TERM 2673 2641944 - 2641963 + g 70 -2.2 -5.00616 | gap 1, opp_overlap 2641961, overlap 2641948 AACGTTCCATATGTT GCATTTCTT CTT GAGA-ATGC TTTTTTAAAAAGGCA YpsIP31758_2342 2642452 - 2642327 - | hypothetical protein holE 2642498 - 2642728 + | DNA polymerase III subunit theta pip 2643738 - 2642788 - | proline iminopeptidase YpsIP31758_2345 2644060 - 2644173 + | hypothetical protein TERM 2674 2644216 - 2644199 - T 76 -10.5 -3.05384 | opp_overlap 2644199 CGTTTCGTGAGTTAA CCCGCCA TTAT CGGCGGG TTTTTTATTGTTCAT TERM 2675 2644199 - 2644216 + T 100 -9.8 -5.66229 | opp_overlap 2644199 CGTTTCGTGAGTTAA CCCGCC ATTATC GGCGGG TTTTTTATTGTTCAT ptrB 2646509 - 2644458 - | protease II TERM 2676 2646746 - 2646726 - R 72 -9.7 -2.83112 | opp_overlap 2646740 ATTGAATTGACCAGA TGGAGGGCA ATA TGCCCTCAA ACATAGCGGGTTATT YpsIP31758_2347 2647229 - 2646819 - | hypothetical protein YpsIP31758_2348 2647644 - 2647336 - | hypothetical protein YpsIP31758_2349 2648004 - 2647684 - | hypothetical protein dbpA 2649480 - 2648098 - | ATP-dependent RNA helicase DbpA TERM 2677 2650834 - 2650794 - g 73 -9.8 -3.37975 | gap 1, overlap 2650784 ACTGACCAGCCAGAA TATCACCTATCGTGGGCTG GAAA CTGCCCT-GATAGGCGATA CACAGATTCGGTTAT purT 2649793 - 2650974 + | phosphoribosylglycinamide formyltransferase 2 TERM 2678 2651037 - 2651010 - T 87 -8.5 -4.49958 | opp_overlap 2651010, overlap 2651014 ACGCTAGCAAATAAA TAAACCCGCCA TTCAGC CAGCGGGTTTA TTTTTATCTATCAAT TERM 2679 2651010 - 2651037 + T 89 -7.1 -5.04597 | opp_overlap 2651010 2651014 ACGCTAGCAAATAAA TAAACCCGC CATTCAGCCA GCGGGTTTA TTTTTATCTATCAAT TERM 2680 2651033 - 2651014 - T 74 -4.9 -4.80736 | opp_overlap 2651010, overlap 2651010 TAGCAAATAAATAAA CCCGCCA TTCAGC CAGCGGG TTTATTTTTATCTAT YpsIP31758_2352 2651361 - 2651104 - | hypothetical protein pabB 2651526 - 2652902 + | para-aminobenzoate synthase, component I YpsIP31758_2354 2652899 - 2653498 + | hypothetical protein TERM 2681 2653522 - 2653507 - f 100 -11.8 -3.92373 | opp_overlap 2653507 TATTTGACTCATAAA GCCGCC ATTT GGCGGC TGTTAACCTGTGACA TERM 2682 2653507 - 2653522 + F 86 -11.8 -3.07962 | opp_overlap 2653507 TATTTGACTCATAAA GCCGCC ATTT GGCGGC TGTTAACCTGTGACA TERM 2683 2653929 - 2653909 - f 70 -7.5 -3.79993 | TTAGAGACCAAAATA TACCGGGCC ATT GACCCCGTA GCTGAATAACTAGAA TERM 2684 2654659 - 2654671 + G 73 -5.5 -4.56607 | opp_overlap 2654657, overlap 2654657 GCAAAACATACTACT CCATC GGC GGTGG TTTTATCGTTGATGA sdaA 2654226 - 2655590 + | L-serine ammonia-lyase TERM 2685 2655572 - 2655590 + T 78 -2.4 -5.47218 | overlap 2655576 TGGTGGCCTGGCGAT TAAAGTGC AGT GTACTTGA TTTTTTTCGCTGACA TERM 2686 2655741 - 2655759 + T 100 -8.8 -4.82901 | opp_overlap 2655729 AAAGGATGGCGCGGC TAGCCCCC AGG GAGGGCTA TTTTTATGCAGGGAA TERM 2687 2655829 - 2655868 + T 100 -21 -3.55444 | opp_overlap 2655829 GCACGTTGTCAACAA CCTCTAATGCCCGTCA GTTAAATA TGACGGGCATTAGAGG TTTACACCATCACCG TERM 2688 2655868 - 2655829 - T 100 -21 -3.62046 | opp_overlap 2655829 GCACGTTGTCAACAA CCTCTAATGCCCGTCA GTTAAATA TGACGGGCATTAGAGG TTTACACCATCACCG hpaC 2656367 - 2655870 - | 4-hydroxyphenylacetate 3-monooxygenase, reductase component hpaB 2657950 - 2656388 - | 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component hpaX 2659385 - 2658018 - | 4-hydroxyphenylacetate permease TERM 2689 2659317 - 2659332 + g 75 -3.2 -5.06414 | GACGGACTGCTGCTG CGCACT TAAT GGTGTG TTTTTATTGACCGGC hpaI 2660217 - 2659411 - | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 2690 2660152 - 2660169 + g 90 -2.7 -5.72207 | GCTACACAAACCTAG CCATAAG CCAA TTTGTGG TTTTTTTGCTTTCAG hpaH 2661031 - 2660228 - | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase TERM 2691 2660418 - 2660430 + g 73 -10.5 -3.10344 | opp_overlap 2660411 TGATTCAATACCGCC GCGGC AAC GCCGC TCTCTTCAATCACGC hpaF 2661423 - 2661025 - | 5-carboxymethyl-2-hydroxymuconate delta isomerase hpaD 2662305 - 2661448 - | 3,4-dihydroxyphenylacetate 2,3-dioxygenase hpaE 2663890 - 2662424 - | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase TERM 2692 2663059 - 2663041 - G 73 -2.3 -5.06414 | TCTCTTGAATAAAAA TGCGCGA ACCCG CCGTGCA ACGTTCACCATTGAG hpaG2 2664651 - 2663887 - | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit hpaG1 2665280 - 2664648 - | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit TERM 2693 2665692 - 2665702 + G 85 -4.6 -5.42862 | TTGCAGGCTCGTGAA GCCG CTA TGGC TTTTTTTCGGCCTAT hpaR 2665650 - 2666117 + | homoprotocatechuate degradation operon regulator, HpaR TERM 2694 2666205 - 2666178 - T 100 -17 -3.62046 | opp_overlap 2666172 GTACGTTGTCAATAA CCTCAGGGGAGC CGAA GCGCCCCTGAGG TTCCACTCTCTGCTT YpsIP31758_2367 2667763 - 2666219 - | CBS domain-containing protein TERM 2695 2667523 - 2667499 - G 71 -6.5 -4.30576 | CCCCCACCAGCAAAA TTAAATCTCGC CCA GCGAAATTAAA CGCACCGACGCTGAA YpsIP31758_2368 2668474 - 2669448 + | PTS system mannose/fructose/sorbose family IIB subunit YpsIP31758_2369 2669540 - 2670337 + | PTS system mannose/fructose/sorbose family IIC subunit TERM 2696 2670712 - 2670745 + G 73 -9.5 -3.33162 | overlap 2670720 CATTAAAGTGGGTCT GATGGGGCCACTGGC CGGT GTCGGTGACCCGATC TTCTGGGGTACCGTA YpsIP31758_2370 2670353 - 2671231 + | mannose-specific PTS system protein IID TERM 2697 2671254 - 2671277 + F 100 -8.8 -4.89567 | opp_overlap 2671257, overlap 2671257 GATTATCTTCATCCA AAACCGGGGG CTTG CTCCCGGTTA TTTTATCTTTTAGAC TERM 2698 2671274 - 2671257 - f 79 -8.3 -4.18494 | opp_overlap 2671257 2671254 TATCTTCATCCAAAA CCGGGGG CTTG CTCCCGG TTATTTTATCTTTTA TERM 2699 2671257 - 2671274 + F 100 -10.5 -4.52747 | opp_overlap 2671257, overlap 2671254 TATCTTCATCCAAAA CCGGGGG CTTG CTCCCGG TTATTTTATCTTTTA YpsIP31758_2371 2671431 - 2671892 + | hypothetical protein TERM 2700 2672627 - 2672616 - g 76 -2.2 -5.24449 | CAGAAACGGAAAAAA TGCG CAGT CACA GTTTTTGGGTGTTGG YpsIP31758_2372 2672321 - 2672890 + | hypothetical protein TERM 2701 2672983 - 2672945 - T 100 -24.8 -3.00946 | opp_overlap 2672949, overlap 2672949 CTGCGCGATAAATGA GAAATCCCCCGGCGATAT ATC AAATCGCCGGGGGATTTC AGTAAAGCACCTGTT TERM 2702 2672979 - 2672949 - T 100 -19.8 -4.17701 | opp_overlap 2672949, overlap 2672945 GCGATAAATGAGAAA TCCCCCGGCGATAT ATC AAATCGCCGGGGGA TTTCAGTAAAGCACC TERM 2703 2672949 - 2672979 + T 100 -19.8 -3.64703 | opp_overlap 2672945 2672949 GCGATAAATGAGAAA TCCCCCGGCGATAT ATC AAATCGCCGGGGGA TTTCAGTAAAGCACC fcuA 2675342 - 2673051 - | ferrichrome receptor FcuA TERM 2704 2673393 - 2673403 + g 74 -6.8 -4.33165 | GTTACCGTTGTTCGT CCCA TTT TGGG TTTTAGTCAGTTTAG TERM 2705 2674903 - 2674929 + g 72 -5.8 -4.36914 | opp_overlap 2674892, overlap 2674904 2674926 2674928 CGAATACGGTAATTC TGTGATGGGTTA CCG TAACCCCGCACG TTTTGTACCGAAGCG TERM 2706 2675295 - 2675317 + g 80 -12 -2.82623 | opp_overlap 2675293 2675291 2675296, overlap 2675294 GACGCACAAAAGACG AGGAGCCGAA CGT TTCGGCTCCG TACTTATGGAGAGAG TERM 2707 2675316 - 2675296 - G 100 -15.5 -2.98789 | opp_overlap 2675295 2675294, overlap 2675293 2675291 ACGCACAAAAGACGA GGAGCCGAA CGT TTCGGCTCC GTACTTATGGAGAGA TERM 2708 2676874 - 2676856 - g 71 -6.6 -4.22214 | AGTGAGCGAAAACAA CGCGAAGA TGC CCTGCGCG CCAGTGAAGCTGCCC YpsIP31758_2374 2675701 - 2677782 + | putative sensory box-containing diguanylate cyclase TERM 2709 2677787 - 2677818 + F 100 -9.5 -4.98255 | overlap 2677789 TCACCTCTTGAGGTA TATTGCGGGTGGC TATCAT GTCACCTGCAATG TTTTTATGATTGGCC TERM 2710 2677789 - 2677816 + F 88 -9.9 -4.11322 | overlap 2677787 ACCTCTTGAGGTATA TTGCGGGTGGC TATCAT GTCACCTGCAA TGTTTTTATGATTGG YpsIP31758_2375 2678004 - 2678282 + | hypothetical protein rrmA 2679343 - 2678504 - | 23S rRNA methyltransferase A TERM 2711 2679386 - 2679372 - H 76 -7.8 -4.22858 | overlap 2679369 ATAACAGATAAATAA CCGCCA AGA TAGCGG GCAGATGCGGCGTTA YpsIP31758_2377 2679739 - 2680512 + | hypothetical protein TERM 2712 2680591 - 2680560 - f 86 -11.7 -3.34398 | opp_overlap 2680568 2680589, overlap 2680568 GGGTTTCCCCAAATA TGAAAAAACCCGC ACAAAG GCGGGTTTTTACA GCAAACGCTGATTAG TERM 2713 2680568 - 2680583 + F 78 -7.5 -4.56597 | opp_overlap 2680560 2680568 CCAAATATGAAAAAA CCCGC ACAAAG GCGGG TTTTTACAGCAAACG TERM 2714 2680583 - 2680568 - f 91 -7.5 -5.32699 | opp_overlap 2680568, overlap 2680560 CCAAATATGAAAAAA CCCGC ACAAAG GCGGG TTTTTACAGCAAACG YpsIP31758_2378 2680648 - 2680839 + | hypothetical protein TERM 2715 2681162 - 2681176 + F 93 -10 -4.28049 | TATACTGTCTCATCC CCCAGT TTT ACTGGG TTTTAACATTTTAGC YpsIP31758_2379 2681408 - 2681572 + | hypothetical protein pagP 2682024 - 2682581 + | palmitoyl transferase for Lipid A TERM 2716 2682643 - 2682607 - T 89 -6.8 -5.28481 | opp_overlap 2682609, overlap 2682609 TATTTAACTAAAAAA CAGCATATAACCAT AATATTAAA ATGGTTATATGCTT GGTTGAGGGCGAATT TERM 2717 2682641 - 2682609 - T 88 -9.4 -4.26777 | opp_overlap 2682609, overlap 2682607 TTTAACTAAAAAACA GCATATAACCAT AATATTAAA ATGGTTATATGC TTGGTTGAGGGCGAA TERM 2718 2682609 - 2682641 + T 74 -9.4 -3.33696 | opp_overlap 2682609 2682607 TTTAACTAAAAAACA GCATATAACCAT AATATTAAA ATGGTTATATGC TTGGTTGAGGGCGAA aroP1 2684250 - 2682877 - | aromatic amino acid transport protein AroP YpsIP31758_2382 2684732 - 2684487 - | hypothetical protein YpsIP31758_2383 2685140 - 2684841 - | hypothetical protein TERM 2719 2685391 - 2685362 - R 95 -12.9 -3.10071 | opp_overlap 2685360 2685355, overlap 2685352 AAATTGCAGGTAACA TGCTGACACTGCC TGTT GGTAGTGCCAGCA TCGGGACACGTTTAT YpsIP31758_2384 2685678 - 2685403 - | hypothetical protein YpsIP31758_2385 2686261 - 2686494 + | hypothetical protein YpsIP31758_2386 2686824 - 2686585 - | hypothetical protein TERM 2720 2687111 - 2687101 - H 87 -5.4 -5.42259 | GCATCTTTAAAAAAA TGGT TAC ACCA ACAACCGCTATCAGA TERM 2721 2687273 - 2687247 - H 71 -6.6 -4.14243 | opp_overlap 2687247 TATGGCACTTGAAAA CTCTTTTGCCAA ACC TCGGCCAAAAAG TCTTTACCGCACATT TERM 2722 2687449 - 2687435 - g 71 -9.2 -3.56594 | opp_overlap 2687435, overlap 2687425 GTAAATGGGTCGAAA CCCACC TAG GGCGGG TCATCTATCTTGAAG YpsIP31758_2387 2687380 - 2687766 + | AraC family transcriptional regulator YpsIP31758_2388 2688012 - 2687848 - | hypothetical protein YpsIP31758_2389 2688667 - 2690385 + | ABC transporter, permease protein/ATP-binding protein TERM 2723 2690423 - 2690400 - f 88 -6.7 -5.17353 | ATACTCAGTAAAAAA CCACCCG TTAACGACTC CGGGTGG TAAACTGAAGAAAAA YpsIP31758_2390 2690488 - 2691339 + | RIO1 family protein kinase TERM 2724 2691406 - 2691392 - f 75 -5.6 -4.71318 | AAGATCAAAAAACAA CCTCTG GAG CAGCGG CCTTCCCTGCTCCTC YpsIP31758_2391 2691576 - 2691860 + | YCII domain-containing protein TERM 2725 2691906 - 2691887 - f 76 -9.3 -3.49858 | opp_overlap 2691881, overlap 2691879 TCAAGCACACCATAA GCCATGG TGAATG CCATGGC TGCTGATAAGTTCAG TERM 2726 2692301 - 2692280 - g 75 -5.8 -4.62772 | overlap 2692281 TGGAAAGCAAATAAA CCGCAAGC GGAGAT GCTTGCGC AATGGCATGAGGCAC YpsIP31758_2392 2692250 - 2693062 + | hypothetical protein TERM 2727 2693355 - 2693322 - T 71 -9.7 -2.66748 | opp_overlap 2693327, overlap 2693327 GAGGAGCCAAATTTA GAAAATCCCGTTTAG GAAA CTAAGCGGGATTTTT GCTTTTCTATCACTG TERM 2728 2693350 - 2693327 - T 95 -9.6 -4.51196 | opp_overlap 2693327, overlap 2693322 GCCAAATTTAGAAAA TCCCGTTTAG GAAA CTAAGCGGGA TTTTTGCTTTTCTAT TERM 2729 2693327 - 2693350 + T 100 -11.8 -5.15526 | opp_overlap 2693327 2693322 GCCAAATTTAGAAAA TCCCGTTTAG GAAA CTAAGCGGGA TTTTTGCTTTTCTAT YpsIP31758_2393 2694489 - 2693473 - | LacI family sugar-binding transcriptional regulator TERM 2730 2693825 - 2693835 + g 77 -4.6 -4.87665 | TAACCGCCAGGACGA GTGG GAT CCGC TTTTTGTAGATACCC TERM 2731 2694278 - 2694262 - G 75 -5.9 -4.60487 | TATCATTTCCAAAAA TGTCGAA TTA TTCAACA CTCGTGGACGTGATG TERM 2732 2694701 - 2694665 - H 89 -12.6 -2.87881 | gap 1, opp_overlap 2694665 2694681, overlap 2694672 2694686 TAAGTTCGTCACACA TCCGAAACGTTT-AGAT TTAA ATCCGAAACGTTTCGGA TCTACTCTAATGCCG TERM 2733 2694665 - 2694701 + H 75 -10.4 -2.87468 | gap 1, opp_overlap 2694665 2694672 2694686, overlap 2694681 TAAGTTCGTCACACA TCCGAAACGTTTAG-AT TTAA ATCCGAAACGTTTCGGA TCTACTCTAATGCCG TERM 2734 2694701 - 2694686 - H 70 -7.6 -3.7108 | opp_overlap 2694665 2694681, overlap 2694672 2694665 ACGTTTAGATTTAAA TCCGAA ACGT TTCGGA TCTACTCTAATGCCG lacY 2694844 - 2696151 + | galactoside permease agaN 2696229 - 2698355 + | alpha-galactosidase AgaN TERM 2735 2698361 - 2698380 + F 95 -12.8 -2.94322 | opp_overlap 2698357, overlap 2698358 CGTAAATTAACCTCA GGCCGCCG TTTA TGGCGGCC TACTTTGCGTCCAAT YpsIP31758_2396 2698372 - 2698536 + | hypothetical protein YpsIP31758_2397 2698752 - 2698603 - | hypothetical protein YpsIP31758_2398 2699482 - 2698742 - | 4'-phosphopantetheinyl transferase family protein YpsIP31758_2399 2699991 - 2700983 + | TRAP transporter solute receptor DctP family protein TERM 2736 2700994 - 2701020 + F 75 -10.3 -2.73875 | overlap 2700991 AATAACATCCATCCG GCGGTATTGAA TTATT TTTAATACCGC TGATATTACCCAACG TERM 2737 2701274 - 2701286 + G 75 -7.7 -4.15044 | TGCTATTTTATGTAT GGTGA CGT TCACC TTTATTGGCGCAGCG YpsIP31758_2400 2701107 - 2701613 + | TRAP transporter, DctQ-like membrane protein YpsIP31758_2401 2701633 - 2702925 + | TRAP transporter, DctM subunit YpsIP31758_2402 2703183 - 2703812 + | LuxR family DNA-binding response regulator TERM 2738 2703864 - 2703922 + T 100 -16.3 -2.81072 | opp_overlap 2703863 2703866 2703879, overlap 2703866 2703879 TGAAGTCGGGAAAAC CATTTGCGGCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGGC-GCTGAGG ATTCTGTTACCTCGC TERM 2739 2703920 - 2703866 - T 95 -13.1 -3.08776 | opp_overlap 2703864 2703866 2703879, overlap 2703863 2703879 AAGTCGGGAAAACCA TTTGCGGCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGG-CGCTGA GGATTCTGTTACCTC TERM 2740 2703866 - 2703923 + T 82 -10.2 -3.68988 | gap 3, opp_overlap 2703866 2703863 2703879, overlap 2703864 2703879 AAGTCGGGAAAACCA TTTGC-G-GCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGGCGCTGAGGA TTCTGTTACCTCGCC TERM 2741 2703879 - 2703908 + T 100 -12.3 -3.55444 | gap 1, opp_overlap 2703879 2703866 2703863, overlap 2703864 2703866 CATTTGCGGCCTAAA TACCG-CTTGCCGA TAG TTGGCAAGACGGTA TTTAGGCGCTGAGGA TERM 2742 2703908 - 2703879 - T 78 -10.1 -3.53224 | gap 1, opp_overlap 2703864 2703866 2703879, overlap 2703866 2703863 CATTTGCGGCCTAAA TACCG-CTTGCCGA TAG TTGGCAAGACGGTA TTTAGGCGCTGAGGA TERM 2743 2704367 - 2704344 - T 100 -13.2 -4.15998 | opp_overlap 2704344 AGCCAAATTAAAGAA CCCTGCCTAG GTAA CTAAGCAGGG TTTTTGCATTTCAGT TERM 2744 2704344 - 2704367 + T 100 -11 -4.81851 | opp_overlap 2704344 AGCCAAATTAAAGAA CCCTGCCTAG GTAA CTAAGCAGGG TTTTTGCATTTCAGT TERM 2745 2704629 - 2704593 - T 79 -6.8 -4.66537 | gap 1, opp_overlap 2704599 2704605 2704605, overlap 2704595 TGGCTGAACATAAAA TCTTA-ATGAAAAGCCC TGAG GGACTTTTCATCTATGA GTATTTGTAAAGATT YpsIP31758_2403 2705235 - 2704696 - | hypothetical protein TERM 2746 2705082 - 2705094 + g 91 -3.3 -5.83211 | TTAGCTGTTTATCAC GCTCA AGT TGTGC TTTTTTATTTTCCTC TERM 2747 2705126 - 2705145 + g 93 -8.6 -5.06103 | ACAGCCTCTCTTGCC TCACGAGT CTGA GCTCGTGA TTTTTTAGCCGTTCT YpsIP31758_2404 2706020 - 2705325 - | hypothetical protein TERM 2748 2706829 - 2706819 - g 77 -8.2 -4.21141 | CCTGAACAAATGAAA GCGG TAG CCGC GGCTGGACACGAAGT YpsIP31758_2405 2706597 - 2707478 + | polysaccharide deacetylase family protein TERM 2749 2707564 - 2707533 - g 85 -3 -5.65177 | gap 1, overlap 2707536 2707537 ACATCTATAAAAAAA TATCTGCTGATGGCT GGC AGCCG-CAGCAATTA ACAATCAAAGATGTC YpsIP31758_2406 2707514 - 2708854 + | major facilitator transporter YpsIP31758_2407 2710312 - 2708882 - | hypothetical protein TERM 2750 2710076 - 2710065 - G 81 -3.6 -5.47821 | ACGGAGGCAAAAAAA GCCG CAAT CAGC ATATTGAAACTGTCG argG 2710606 - 2711973 + | argininosuccinate synthase TERM 2751 2712052 - 2712081 + T 83 -10.7 -3.4678 | overlap 2712053 CTGCGCGACCCCAAG CGGTTAAGGGGAG CTTC CCCCCCTTAACCC TTCTCGTGTCACAGT TERM 2752 2712053 - 2712080 + T 95 -14.2 -2.67747 | overlap 2712052 TGCGCGACCCCAAGC GGTTAAGGGGAG CTTC CCCCCCTTAACC CTTCTCGTGTCACAG lldD 2713323 - 2712178 - | L-lactate dehydrogenase TERM 2753 2713119 - 2713107 - G 71 -9.1 -3.50853 | CTGGCCCAAGGACAA CAGGC ATT GCCTG CGTCTCGCCGAAAAG YpsIP31758_2410 2714897 - 2713620 - | mandelate racemase/muconate lactonizing enzyme family protein YpsIP31758_2411 2715771 - 2714929 - | fumarylacetoacetate hydrolase family protein YpsIP31758_2412 2716559 - 2715819 - | oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2413 2716987 - 2717409 + | hypothetical protein YpsIP31758_2414 2718722 - 2717418 - | major facilitator transporter TERM 2754 2717767 - 2717797 + g 83 -6.8 -4.9725 | opp_overlap 2717768 2717771, overlap 2717768 2717769 GCCGCGACAACCAAA TTCAGCGTCGCAAT CGG GTTGCGGCGATGGG TTTTTCTATCGGCAT TERM 2755 2718137 - 2718126 - G 70 -2.2 -4.92314 | ATCAAGGTAGAAAAA GGCA AAAA TACC TAACCCCACGGCGGG YpsIP31758_2415 2718890 - 2719078 + | hypothetical protein TERM 2756 2719196 - 2719206 + F 73 -5.4 -4.65168 | opp_overlap 2719196, overlap 2719203 TGTTTTCAGAATAAT GTCA GAT TGAC TTTTTAAAATGTCAT TERM 2757 2719203 - 2719220 + F 76 -2.7 -5.38054 | opp_overlap 2719196, overlap 2719196 AGAATAATGTCAGAT TGACTTT TTAA AATGTCA TTTTTATTTATAAAA TERM 2758 2720910 - 2720897 - g 71 -6.7 -4.21773 | CGGCAAGACAAACAA TGCCA TTAG TGGCA AATGCCACAGCACAA YpsIP31758_2416 2719762 - 2722989 + | putative intimin TERM 2759 2723076 - 2723054 - T 100 -11.3 -5.16841 | opp_overlap 2723052 GCACACCAATAAAAA GGGCTGACA ATAGA TGCCAGCCC CACTCTCTTTCCCCT YpsIP31758_2417 2723450 - 2723133 - | hypothetical protein YpsIP31758_2418 2723862 - 2723716 - | hypothetical protein YpsIP31758_2419 2724993 - 2723884 - | NAD dependent epimerase/dehydratase family protein TERM 2760 2726239 - 2726226 - g 77 -6.7 -4.56597 | TGGCTCCTGCAAAAA CTCTG CTGC CAGAG AATGCCGATCGCTTG sbcB 2725286 - 2726716 + | exonuclease I TERM 2761 2726854 - 2726868 + T 78 -5.6 -4.85599 | CCGTGGACATTGCAA GCACTG CGG CTGTGC TTTTTCTAAGCTGCC TERM 2762 2728187 - 2728171 - T 72 -10.1 -2.86661 | opp_overlap 2728169, overlap 2728168 AACTCAACAACAGTA CCCGACA AAA TGCCGGG AAATTTCTAAGCTGC TERM 2763 2728801 - 2728778 - T 100 -11.8 -5.47159 | gap 1, opp_overlap 2728778 TCTGAATACAAAAAA TCCGGCAACAG AGA CTGT-GCCGGA TTGATAAACTTAATG TERM 2764 2728778 - 2728801 + T 86 -11.8 -3.19157 | gap 1, opp_overlap 2728778 TCTGAATACAAAAAA TCCGGCAACAG AGA CTGT-GCCGGA TTGATAAACTTAATG YpsIP31758_2421 2730225 - 2728834 - | amino acid permease family protein TERM 2765 2730388 - 2730373 - R 74 -10.4 -2.57132 | overlap 2730372 CTGCTGCGCCATAAT CGCTGC ATGT GCAGCG CATACCGGTGGGCAC TERM 2766 2730574 - 2730549 - R 100 -7.6 -5.86332 | opp_overlap 2730549 2730552 CGAATGCAAAAAAAA TAACCGACGC GTTTAA ACGTCGGCTA TTTCATTCGGCGTAT YpsIP31758_2422 2731775 - 2730684 - | hypothetical protein rbsA7 2732061 - 2733602 + | ribose ABC transporter, ATP-binding protein rbsC4 2733599 - 2734594 + | ribose ABC transporter, permease protein TERM 2767 2734863 - 2734837 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2734846, overlap 2734838 2734853 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2768 2734864 - 2734838 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2734846, overlap 2734837 2734853 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YpsIP31758_2425 2734852 - 2735286 + | hypothetical protein YpsIP31758_2426 2736268 - 2735441 - | NAD dependent epimerase/dehydratase family protein hisL 2736644 - 2736691 + | his operon leader peptide TERM 2769 2736800 - 2736751 - f 78 -10.1 -3.48395 | gap 1, opp_overlap 2736762, overlap 2736762 AGGTGGCGTAGAGAA CGCAGT-AGAGAGCCCTCGGAAGA TAA TCTTCCGAGGGCTTTTTTATTGCT CATCATTTTATAGAC TERM 2770 2736762 - 2736788 + F 100 -21 -5.52023 | opp_overlap 2736751 2736762 AGAACGCAGTAGAGA GCCCTCGGAAGA TAA TCTTCCGAGGGC TTTTTTATTGCTCAT TERM 2771 2736788 - 2736762 - f 100 -21 -2.96538 | opp_overlap 2736762, overlap 2736751 AGAACGCAGTAGAGA GCCCTCGGAAGA TAA TCTTCCGAGGGC TTTTTTATTGCTCAT TERM 2772 2737861 - 2737843 - g 75 -10.2 -3.33711 | opp_overlap 2737843 2737842 2737840, overlap 2737838 CATGGAGAAACTGAA GGCGCTGG GTG CCAGCTCC ATTCTGGTATTACCG hisG 2736998 - 2737897 + | ATP phosphoribosyltransferase TERM 2773 2737978 - 2737964 - g 70 -2.1 -4.93316 | gap 1, overlap 2737955 GAAGAACAGCAAAAA GC-GCT GTTG AGCCGC CCGGCCATCAATGCA hisD 2737901 - 2739232 + | histidinol dehydrogenase hisC 2739235 - 2740383 + | histidinol-phosphate aminotransferase hisB 2740380 - 2741447 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 2741447 - 2742037 + | imidazole glycerol phosphate synthase subunit HisH TERM 2774 2742228 - 2742208 - g 74 -9 -3.65902 | opp_overlap 2742218 CTGACCGGAGCCAAA GATCCGGC CGCTC GCCAGATC CCACTACTGCGCGAG hisA 2742043 - 2742780 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 2775 2743233 - 2743221 - g 74 -9.1 -3.77206 | GAGAAGCGTACCAAA GCCAC CAC GTGGC AAACCGAAGATTGGG hisF 2742762 - 2743538 + | imidazole glycerol phosphate synthase subunit HisF hisI 2743532 - 2744146 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2776 2744175 - 2744199 + T 100 -8.6 -5.06414 | opp_overlap 2744175 TCACTGGCAAAAAAA CGCCTCCA ACTTATCAC TGGAGGCG TTTTTATTGGGCAGC TERM 2777 2744199 - 2744175 - T 100 -10 -5.42259 | opp_overlap 2744175 TCACTGGCAAAAAAA CGCCTCCAAC TTATC ACTGGAGGCG TTTTTATTGGGCAGC gnd 2745755 - 2744346 - | 6-phosphogluconate dehydrogenase YpsIP31758_2437 2747079 - 2746186 - | putative UTP-glucose-1-phosphate uridylyltransferase galU 2748035 - 2747145 - | UTP-glucose-1-phosphate uridylyltransferase TERM 2778 2747342 - 2747353 + g 72 -5.8 -4.36914 | overlap 2747337 GAATTTCATCCCCCG CACC GCGT GGTG TTTTCTCAAGCAACG TERM 2779 2749455 - 2749468 + G 77 -4.5 -4.83615 | gap 1 AGAAACAGCGATGAG CGAGGG CCA CCC-CG TTTTTATCGCGAATA YpsIP31758_2439 2748982 - 2750796 + | IucA/IucC family siderophore biosynthesis protein TERM 2780 2751063 - 2751046 - g 88 -2.5 -5.70829 | opp_overlap 2751047, overlap 2751047 2751049 AATACTAGAAAAAAA TCACGGC AAAA GCCGAGT GCGTTTTAACTGCAC TERM 2781 2751823 - 2751811 - g 75 -3.3 -5.01811 | opp_overlap 2751812, overlap 2751804 2751812 TGATCAAAGTAAAAA CCCGT TTT ACGGT ATCTTGGAGATAGAT TERM 2782 2751988 - 2751949 - g 70 -7.8 -3.85698 | overlap 2751930 2751952 TGGTGGGCGGACAAA TTATGCCCAATCCGCCAC CACC GCATCGGATTGGGCATCC GCCGAAACCCGAACT TERM 2783 2751985 - 2751952 - g 90 -13.9 -3.00946 | overlap 2751930 2751949 TGGGCGGACAAATTA TGCCCAATCCGCCAC CACC GCATCGGATTGGGCA TCCGCCGAAACCCGA fhuE 2751026 - 2753287 + | FhuE receptor TERM 2784 2753310 - 2753331 + F 71 -8.7 -3.39908 | overlap 2753308 AGTTGGATACCCTCA CAGCCGG TCACTTTT CCGGCTG TATCTTTTGCCAACG fepB 2753377 - 2754456 + | ferric enterobactin ABC transporter, ferric enterobactin-binding periplasmic protein FepB TERM 2785 2755217 - 2755255 + G 75 -5.1 -4.75472 | gap 1, overlap 2755219 2755220 AGTAGGCGCAACATT GCTGACCGCTACCGCGAC GGCA GTAGCGGGTCCGGTC-GC TTTTATTGGTCTGGC fepD 2754453 - 2755493 + | ferric enterobactin ABC transporter, permease protein FepD TERM 2786 2755818 - 2755837 + G 81 -12.8 -2.71364 | opp_overlap 2755808 TATTATCGGTATCAC CGCCGGCG CGTC CGCTGGCG TGGTTGCCACCCTAC fepG 2755480 - 2756520 + | ferric enterobactin ABC transporter, permease protein FepG fepC 2756547 - 2757365 + | ferric enterobactin ABC transporter, ATP-binding protein FepC YpsIP31758_2445 2759283 - 2757439 - | IucA/IucC family siderophore biosynthesis protein TERM 2787 2757522 - 2757535 + g 73 -8.1 -3.96469 | opp_overlap 2757522 2757521 CAGGGTCAGCTAAAT CCAGC ATGT GCTGG TTATTGTTGAGCTGT YpsIP31758_2446 2759858 - 2759280 - | hypothetical protein YpsIP31758_2447 2761156 - 2759858 - | lysine N6-hydroxylase/L-ornithine N5-oxygenase family protein TERM 2788 2759889 - 2759906 + g 71 -2.7 -4.87665 | opp_overlap 2759891, overlap 2759871 2759891 AGTGATGGCGCACTG AATTGCT GAAA AGCAATG TTTTTCTCAATCGGA YpsIP31758_2448 2762738 - 2761191 - | pyridoxal-dependent decarboxylase domain-containing protein TERM 2789 2761553 - 2761534 - G 75 -7.9 -4.14874 | ATAACATGTTCAAAA GCCAAAC CAAGCT GTTTGGC TCCCATAATCCGTAG TERM 2790 2762254 - 2762275 + g 74 -6.5 -4.37886 | overlap 2762256 CTGGTGAAAATACCG TCGCCCTGG CTAC CTAGGGCCA TTTTATCGCGGGTCC TERM 2791 2762888 - 2762860 - R 72 -7.5 -3.9751 | opp_overlap 2762864 AAATAAAGAATACAA CCAAGTTTCTG TCTAATG CAGGAACTTGG CTAACTAATAAGATT fhuF 2763668 - 2762889 - | ferric iron reductase involved in ferric hydroximate transport TERM 2792 2764018 - 2764040 + H 89 -7.1 -5.02074 | gap 1 TGGATTGATTTTTTT GTG-ATCGAC TCTG GTCGATGCAC TTTTTTAACAAATGG YpsIP31758_2450 2764110 - 2765696 + | CBS domain-containing protein TERM 2793 2765785 - 2765750 - T 100 -8.3 -4.85782 | gap 1, opp_overlap 2765751 2765751 2765754, overlap 2765751 2765754 GCCTGGAAAAATAAA TGATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TCT CTTTCCACTACCTAT TERM 2794 2765751 - 2765784 + T 100 -14 -3.38522 | gap 1, opp_overlap 2765750 2765751 2765754, overlap 2765751 2765754 CCTGGAAAAATAAAT GATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TC TCTTTCCACTACCTA TERM 2795 2765784 - 2765751 - T 91 -11.8 -3.50746 | gap 1, opp_overlap 2765751 2765751 2765754, overlap 2765750 2765754 CCTGGAAAAATAAAT GATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TC TCTTTCCACTACCTA TERM 2796 2765751 - 2765786 + T 82 -10.5 -3.61922 | gap 1, opp_overlap 2765750 2765751 2765754, overlap 2765751 2765754 CCTGGAAAAATAAAT GA-TTAGGCCCGGTGG AGAAA CCATCGGGCCTATCTC TTTCCACTACCTATT TERM 2797 2765754 - 2765782 + T 100 -16.8 -3.26031 | opp_overlap 2765751 2765750 2765754, overlap 2765751 2765751 GGAAAAATAAATGAT TAGGCCCGGTGG AGAAA CCATCGGGCCTA TCTCTTTCCACTACC TERM 2798 2765782 - 2765754 - T 100 -14.6 -2.57916 | opp_overlap 2765754 2765751 2765751, overlap 2765751 2765750 GGAAAAATAAATGAT TAGGCCCGGTGG AGAAA CCATCGGGCCTA TCTCTTTCCACTACC YpsIP31758_2451 2767749 - 2765893 - | putative assembly protein TERM 2799 2767610 - 2767624 + g 74 -4.2 -4.99638 | overlap 2767612 TCACCCTCCAACTGC AAGTGG TAA CCACTC TTTTTCTCTACCTGT TERM 2800 2767821 - 2767794 - R 71 -4.8 -4.63592 | TCTCAATAAAAAGAA TGACTAGTCCAG ACTG CTGACCAAGTCA AATGAAGGGAAAGCG dcd 2768517 - 2767936 - | deoxycytidine triphosphate deaminase udk 2769263 - 2768622 - | uridine kinase TERM 2801 2768931 - 2768947 + g 73 -2.2 -5.0666 | overlap 2768932 AATGATCACTTTTTT AGGTTC TAAAT GAACCG TTTCTTTTTTACGTG TERM 2802 2769436 - 2769474 + r 86 -11.8 -3.07344 | opp_overlap 2769450 CTATTTAAGCCGATT TTGAGCCGGAAGCATCAT TGA ATGACCTTTCCGGCTCAG TGTGTTACGCGCTCA YpsIP31758_2454 2770620 - 2769508 - | putative ATPase metG 2770885 - 2772912 + | methionyl-tRNA synthetase TERM 2803 2773005 - 2772969 - T 80 -8.8 -3.93658 | gap 1, opp_overlap 2772974, overlap 2772974 AAGATCCTTAAAGAA CAAAATGCCGGTCTGGG GTAA CCCT-ACCGGCATTTTT ATGATTGAAACCCGT TERM 2804 2773000 - 2772974 - T 100 -8.7 -5.00196 | gap 1, opp_overlap 2772974, overlap 2772969 CCTTAAAGAACAAAA TGCCGGTCTGGG GTAA CCCT-ACCGGCA TTTTTATGATTGAAA TERM 2805 2772974 - 2773000 + T 100 -8.7 -4.98255 | gap 1, opp_overlap 2772969 2772974 CCTTAAAGAACAAAA TGCCGGTCTGGG GTAA CCCT-ACCGGCA TTTTTATGATTGAAA YpsIP31758_2456 2773871 - 2773041 - | hypothetical protein TERM 2806 2773334 - 2773320 - G 73 -3.6 -4.84274 | TAACGACATCAAAAA GATAAT CGC ATCATC TAGATCAAACCACAC TERM 2807 2773769 - 2773759 - G 89 -3.2 -5.61689 | AAAATTAATAAAAAA TCAC TGC GCGA TATATAAAAATAGGC YpsIP31758_2457 2774405 - 2775481 + | hypothetical protein TERM 2808 2775533 - 2775553 + G 76 -11.1 -3.15544 | opp_overlap 2775534 2775536, overlap 2775536 TGCCGATACCTGAAT ACAGCCGCA ATA TGCGGCTGA TTGGTCACAGTGACC TERM 2809 2775552 - 2775534 - g 91 -14.6 -3.07962 | opp_overlap 2775533 2775536, overlap 2775536 GCCGATACCTGAATA CAGCCGCA ATA TGCGGCTG ATTGGTCACAGTGAC TERM 2810 2775536 - 2775550 + G 76 -11.4 -2.78216 | opp_overlap 2775534 2775536, overlap 2775533 CGATACCTGAATACA GCCGCA ATA TGCGGC TGATTGGTCACAGTG TERM 2811 2775550 - 2775536 - g 79 -11.4 -3.09785 | opp_overlap 2775536 2775533, overlap 2775534 CGATACCTGAATACA GCCGCA ATA TGCGGC TGATTGGTCACAGTG TERM 2812 2775692 - 2775678 - g 90 -9.2 -4.63184 | opp_overlap 2775678 AAGGGATGCCAAAAA CCCGCG TCC CGCAGG TTTCATCGCTGCGCC YpsIP31758_2458 2775499 - 2776752 + | hypothetical protein TERM 2813 2776910 - 2776883 - f 93 -9.8 -4.39226 | opp_overlap 2776885, overlap 2776880 2776885 ATAACTAGAAAATAA TAGCAGATCGGC TCTG GCCGAACTGCTT CCTGCAAAAATTTTC TERM 2814 2776885 - 2776908 + F 93 -12.4 -3.1506 | opp_overlap 2776883 2776880 2776885 AACTAGAAAATAATA GCAGATCGGC TCTG GCCGAACTGC TTCCTGCAAAAATTT TERM 2815 2776908 - 2776885 - f 100 -12.4 -3.78091 | opp_overlap 2776885, overlap 2776883 2776880 AACTAGAAAATAATA GCAGATCGGC TCTG GCCGAACTGC TTCCTGCAAAAATTT TERM 2816 2777089 - 2777063 - f 71 -2.2 -5.16681 | opp_overlap 2777086, overlap 2777068 CTAAAAATAAGAAAA TACATGCAAAGA TTC TCATCGCGCGTA ACCAATCTGCTGATT TERM 2817 2777988 - 2777999 + G 75 -5.8 -4.5442 | TTCCGTTATGGATGC TGGC AATG GCCA TTTTCTCATTGGGCG YpsIP31758_2459 2777066 - 2778247 + | major facilitator transporter TERM 2818 2778511 - 2778529 + G 71 -8.8 -3.6512 | ATATGATGTCACTTT GCTGGCAG TAC CTGCGAGC TTTCACCATTATTTA YpsIP31758_2460 2778489 - 2778896 + | hypothetical protein TERM 2819 2779330 - 2779346 + G 80 -7.3 -4.62904 | TGGTTTACCCGCTAT TAGCGCA GTT TGCGTTA TTTTTGCCGGTATTT YpsIP31758_2461 2778893 - 2779588 + | hypothetical protein cdd 2779934 - 2780818 + | cytidine deaminase TERM 2820 2782265 - 2782249 - g 76 -2.2 -5.25803 | AATTGGTACAAAAAA GTGACG ACCTA CACCAC TGGAATCTGCACAAT YpsIP31758_2463 2781174 - 2782871 + | malate dehydrogenase TERM 2821 2782905 - 2782878 - f 73 -8.3 -3.65812 | overlap 2782879 TCGTTTTGAATATAA TCCGGCCTGTG CTATAC CGCAGGCCGGG TACTCAGATGCTATC TERM 2822 2782904 - 2782879 - f 83 -11.8 -2.79273 | overlap 2782878 CGTTTTGAATATAAT CCGGCCTGTG CTATAC CGCAGGCCGG GTACTCAGATGCTAT TERM 2823 2782986 - 2782975 - f 71 -3 -5.06816 | AGCGTTGAACAAAAA GTTA CTTG TAAC CCCAAAGCACATGCG TERM 2824 2783742 - 2783754 + G 71 -6.9 -4.26871 | CCTCTATATTCTTAA GCGGG AAC CTCGC TTTCTTGGTCCATTG YpsIP31758_2464 2783152 - 2783889 + | hypothetical protein TERM 2825 2784152 - 2784178 + T 100 -13.1 -4.68846 | gap 1, opp_overlap 2784147 TTGTCATTAACTTCA GCCAGT-AGGGC TATC GCCCTGACTGGC TTTTACTTTATTCCT mglC 2785344 - 2784334 - | beta-methylgalactoside transporter inner membrane component mglA 2786885 - 2785365 - | galactose/methyl galaxtoside transporter ATP-binding protein TERM 2826 2786562 - 2786533 - G 85 -2.8 -5.64274 | opp_overlap 2786533 2786535 2786553, overlap 2786535 TGATCGACAAAAAAA CCTTTGGTTGGA TAGCGC CCCAACCACATG TTGTCCATTACTGTA TERM 2827 2786624 - 2786644 + g 71 -6.9 -4.30448 | overlap 2786637 CCATCGAAACACCCT GTTCTAATG CTT CTTTAGAAC TTTTAAATTCAATTT mglB 2788107 - 2787115 - | galactose ABC transporter, periplasmic galactose-binding protein TERM 2828 2787151 - 2787173 + g 75 -3.4 -5.14698 | opp_overlap 2787152, overlap 2787152 ATTATCTTTATCAAC ACCTACGTAT GGA ATACGTACGA TTTTGTTTTCAATTT TERM 2829 2787523 - 2787534 + g 74 -4.4 -4.86621 | TAACTGCAATTGTTG GGTT GGCA AACC TTTTTCATTCAGGGT YpsIP31758_2468 2788701 - 2788528 - | hypothetical protein YpsIP31758_2469 2790021 - 2788855 - | hypothetical protein TERM 2830 2789243 - 2789231 - G 80 -4.7 -5.14965 | overlap 2789232 ACTTGTAGCAAAAAA CCCGC CCA GCGGT AATCCCAACCGACAT TERM 2831 2789242 - 2789232 - G 71 -8.2 -3.68256 | overlap 2789231 CTTGTAGCAAAAAAC CCGC CCA GCGG TAATCCCAACCGACA TERM 2832 2789621 - 2789607 - G 73 -10 -3.30418 | overlap 2789605 2789603 CACCGATCAAATAGA GTACCG CGC CGGTAC GTAATAAGCTGGCTG folE 2790738 - 2790076 - | GTP cyclohydrolase I TERM 2833 2790800 - 2790828 + r 93 -13.3 -2.84 | opp_overlap 2790777, overlap 2790797 CGGGTCACACCCGAA TTTCGCTCTCACT CTA ATTGAGAGCGAAA TGATTATCCAGTGAT YpsIP31758_2471 2792073 - 2790922 - | major facilitator transporter TERM 2834 2791698 - 2791658 - G 79 -11.7 -3.19824 | overlap 2791656 2791678 2791680 2791681 CCACTAATGAATATA CCGGCACCCGGCCCGGC AAATACG GCCGCACTGAGCGCCGG ACGGCCAAAATGTGC YpsIP31758_2472 2792209 - 2793078 + | LysR family substrate binding transcriptional regulator TERM 2835 2793467 - 2793477 + G 73 -8.2 -3.87815 | overlap 2793475 GTTAGTGCGGATTGT CGCC AGT GGCG TTTGTCACACTGACG YpsIP31758_2473 2793354 - 2794493 + | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase TERM 2836 2794556 - 2794595 + G 78 -12 -2.6252 | opp_overlap 2794570, overlap 2794553 2794553 GAGCATCGGATGTTT GGCGGCTGGCAACAGCGC TACC GCCATGCTGCCAGCAGCC TGAATTGTCATATGA fghA 2794514 - 2795356 + | S-formylglutathione hydrolase TERM 2837 2795396 - 2795409 + T 95 -8.1 -5.10461 | opp_overlap 2795390 2795392 CACATAAAACCTCAA GCCCT TTCG AGGGC TTTTTATTCGATAGA YpsIP31758_2475 2795586 - 2795434 - | hypothetical protein TERM 2838 2795786 - 2795768 - H 71 -4.6 -4.58698 | CGAAATTAAAAATAA TACCCTAC ACA GTAAGATA ACGGCATGGAGTTGG TERM 2839 2796179 - 2796169 - g 100 -5.4 -5.81622 | ACAAAATGAAAAAAA CATC AAA GATG TCGCCTACGCTTTAC TERM 2840 2796882 - 2796892 + G 75 -5.4 -4.72272 | CTAATTATCAATTAC TGAC AGA GTCA TTTTTCATCGCAACA TERM 2841 2797290 - 2797271 - g 78 -5.8 -4.72272 | TTTGGTTATGAAAAA GAAAATGT CGTG ACATTTCC ACTAAGCGATGAATT TERM 2842 2797569 - 2797555 - g 78 -5.8 -4.76041 | opp_overlap 2797555 TACACCCAGTAAAAA TGATAA TAC TTATCA TGCTATAGCGACAAA YpsIP31758_2476 2795909 - 2798269 + | hypothetical protein YpsIP31758_2477 2798271 - 2799533 + | RND family efflux transporter MFP subunit YpsIP31758_2478 2799535 - 2800203 + | ABC transporter ATP-binding protein YpsIP31758_2479 2800213 - 2801523 + | radical SAM domain-containing protein TERM 2843 2801518 - 2801547 + F 72 -9.3 -3.11687 | opp_overlap 2801516 TATCTGGCAGATATT CGTTGAAGCCACA TCAT TATGGCGTCAACG TTGCCTCATGATTCA TERM 2844 2801683 - 2801671 - f 74 -6.3 -4.56775 | ATGTGTTGGTAAAAA CATTG TTG CAATG AAAGTTATATTGAAG TERM 2845 2801904 - 2801879 - f 100 -11.3 -4.34345 | TATATACGATGAAAA TGATACTGCTC GTAA AAGCAGTATCA AGCCATCTCATTTTT moeA 2802058 - 2803332 + | molybdopterin biosynthesis protein MoeA moeB 2803334 - 2804104 + | molybdopterin biosynthesis protein MoeB YpsIP31758_2482 2804823 - 2804176 - | hypothetical protein TERM 2846 2805015 - 2804997 - R 100 -11 -5.80248 | opp_overlap 2804997 GAAGACATAAAAAAA GCTGACGC ATA GCATCAGC TTTTTTTGTTAGGTC TERM 2847 2804997 - 2805015 + r 100 -8.8 -5.8187 | opp_overlap 2804997 GAAGACATAAAAAAA GCTGACGC ATA GCATCAGC TTTTTTTGTTAGGTC YpsIP31758_2483 2806636 - 2805041 - | ABC transporter, ATP-binding protein TERM 2848 2806842 - 2806816 - H 80 -3.6 -5.40625 | ACATGACAGAAAAAA TCGTGCCATCAA AGC TCGCAGACACGA CGTTTTACCTATATA TERM 2849 2807439 - 2807429 - g 80 -4 -5.28166 | overlap 2807438 GAAAATCAACAAAAA CATT ATA AATG CTGAGACCCAACATA TERM 2850 2807507 - 2807522 + G 79 -3.2 -5.18371 | AGAACGCTATAACGC CTCAAC AACA GCTGAG TTTTATTTTGTCGAA YpsIP31758_2484 2807319 - 2807942 + | hypothetical protein TERM 2851 2808001 - 2808050 + T 81 -10.8 -3.27923 | gap 1, opp_overlap 2808006, overlap 2808005 2808010 TGGTGTTAATACAGT TTAAAGGTCGCGCTC-CAGCAGG ATCAC CCCGCTGTGAGCGCTATCATTAA TTAATAATATTCAAA TERM 2852 2808045 - 2808006 - T 90 -11.4 -3.66883 | gap 1, opp_overlap 2808005 2808001 2808010 TTAATACAGTTTAAA GGTCGCGCTC-CAGCAGGA TCA CCCCGCTGTGAGCGCTATC ATTAATTAATAATAT TERM 2853 2808010 - 2808041 + T 93 -12.3 -2.97613 | gap 1, opp_overlap 2808006, overlap 2808005 2808001 TACAGTTTAAAGGTC GCGCTC-CAGCAGG ATCAC CCCGCTGTGAGCGC TATCATTAATTAATA YpsIP31758_2485 2809521 - 2808154 - | ImpA domain-containing protein TERM 2854 2808882 - 2808867 - G 80 -9 -4.19817 | GTGAGGCAGGTAAAA CCACCT GAAC AGGTGG CGGGGCCGGTTCGCT TERM 2855 2809415 - 2809431 + g 71 -5 -4.56702 | opp_overlap 2809409 2809407, overlap 2809385 2809417 CAGTCAACATCCGGA CGGGCC GGGTG GGCCAG TTTATTTAATTCACC YpsIP31758_2486 2809997 - 2809545 - | hypothetical protein YpsIP31758_2487 2810578 - 2809997 - | hypothetical protein YpsIP31758_2488 2811638 - 2810553 - | hypothetical protein YpsIP31758_2489 2813365 - 2811602 - | hypothetical protein TERM 2856 2812660 - 2812683 + gr 83 -11.8 -2.82516 | gap 1, opp_overlap 2812658 2812653 2812662, overlap 2812662 GATAACCACTGAACG CACTGTCGGCC TTC GGCC-ACAGTG TATCCTGCTCCCCGA YpsIP31758_2490 2813915 - 2813457 - | hypothetical protein YpsIP31758_2491 2815033 - 2813918 - | hypothetical protein TERM 2857 2814390 - 2814404 + g 70 -2.1 -4.89852 | AACAATGGGTCACTG TACGG TTTAC CTGTA TTTTTCTCCATATGC YpsIP31758_2492 2816652 - 2815051 - | ImpA domain-containing protein TERM 2858 2815792 - 2815818 + g 75 -11.4 -2.53876 | TTGTACGCGATATTC CGGGCGCGGCGG TAC CAGCCGGGTCCG TCCGTTCACATCCAA TERM 2859 2815913 - 2815931 + g 74 -6.6 -4.371 | opp_overlap 2815883, overlap 2815899 2815883 2815926 CCCTGCGGCTGGTTG CGCAGGTA TTT TGCCAGCG TTTTGGTCTGATCGA YpsIP31758_2493 2817518 - 2816697 - | hypothetical protein YpsIP31758_2494 2820572 - 2817531 - | hypothetical protein TERM 2860 2818837 - 2818808 - G 71 -6.3 -4.25104 | opp_overlap 2818830 TTTTCCTCAGTAAAA CCGGGTCGGTTAT CTCC ATCATCGCCCCGG CTGCCGAAGTGTTCA YpsIP31758_2495 2824076 - 2820654 - | hypothetical protein TERM 2861 2821677 - 2821698 + g 74 -6.5 -4.42653 | overlap 2821680 CGTTTGCAGGCTCAG CGAGCTGTC CGAC GACAGCCTG TTTTGTGCATCGCCT TERM 2862 2822122 - 2822137 + g 75 -6 -4.61199 | overlap 2822121 CAGTCAATTTCTTCG CGGCGG GAGG CCACCG TTTTATCTATCGCCT TERM 2863 2822382 - 2822370 - G 73 -10.5 -3.14344 | opp_overlap 2822369 CACCTGGCTTACCAA CCCGG TAT CCGGG GTAATTTTCCAGTCC TERM 2864 2822539 - 2822578 + g 71 -5 -4.60487 | TCGGCTTTTTCCGGG CGGGCCATCATCAGATAA GCCT TTAACTGGTCATAGCCTG TTTTTGCCCGTGCTG TERM 2865 2822593 - 2822605 + g 72 -10.5 -3.01791 | GTTTTTGCCCGTGCT GCCCG TTG CGGGC TGTTGGCGGGCAGCT TERM 2866 2823040 - 2823055 + g 75 -6.1 -4.51378 | ACCCCCTGCCAACTG GCTGG CACCGT CCAGC TTTTCTCATGTACCT YpsIP31758_2496 2825305 - 2824073 - | hypothetical protein TERM 2867 2825145 - 2825128 - G 83 -9.1 -4.44915 | GAACCAGCCAGAAAA CCACCGG GATA CCGATGG CAAACCACCAGAACT YpsIP31758_2498 2827418 - 2827251 - | hypothetical protein TERM 2868 2827704 - 2827718 + H 70 -3.6 -4.75518 | CAAAGAGTTTGGGGA CTTTAT ATT GTAAAG TTTTAATTTTATATA YpsIP31758_2499 2828017 - 2828238 + | hypothetical protein YpsIP31758_2500 2829738 - 2828245 - | M23 peptidase domain-containing protein TERM 2869 2829556 - 2829540 - G 87 -6.5 -5.09895 | overlap 2829542 2829543 GACGTACTGAAAAAA CAGTGCC GTC GGCAATG GCACGCACTTGCTCC YpsIP31758_2501 2830014 - 2829754 - | hypothetical protein YpsIP31758_2502 2830941 - 2830168 - | hypothetical protein YpsIP31758_2503 2833238 - 2830938 - | M23 peptidase domain-containing protein YpsIP31758_2504 2835602 - 2833254 - | Rhs element Vgr protein YpsIP31758_2505 2838247 - 2835605 - | AAA family ATPase TERM 2870 2838406 - 2838387 - R 100 -11.4 -5.72254 | GCAAACAATAAAAAA GCAGACGG CGAA CCGCCTGC TGATGCGGGTTACCC YpsIP31758_2506 2839032 - 2838541 - | hypothetical protein YpsIP31758_2507 2840772 - 2839036 - | OmpA domain-containing protein TERM 2871 2839685 - 2839655 - G 77 -10.4 -3.61398 | GCTTTCGGGGAATAA TCCGTCATCGCCAC GCT GTGGTACTGACGGA TATCAAAGGCCACCC YpsIP31758_2508 2841458 - 2840772 - | hypothetical protein TERM 2872 2841168 - 2841151 - G 74 -2.6 -5.09225 | overlap 2841152 2841153 AGGGTATTGAAAAAA TGCGCC TGTAAG GGCGAA TGGCACCACACGAAG YpsIP31758_2509 2842807 - 2841455 - | hypothetical protein YpsIP31758_2510 2844369 - 2842819 - | hypothetical protein TERM 2873 2844324 - 2844346 + g 74 -6.3 -4.34402 | gap 1, overlap 2844325 TATTCTTTAATACGG TCGT-CGCAG TACC CTGCGCACGG TTTTCCTGTACAGAC YpsIP31758_2511 2844912 - 2844412 - | hypothetical protein TERM 2874 2845327 - 2845352 + r 82 -4.8 -5.41143 | opp_overlap 2845329, overlap 2845329 AGGAATTTGGGAAGT GATTTGTAGG AATTCG CCTACAAATA TTTTTTTCAGAAATG TERM 2875 2845329 - 2845350 + r 75 -7.4 -4.34482 | opp_overlap 2845329, overlap 2845327 GAATTTGGGAAGTGA TTTGTAGG AATTCG CCTACAAA TATTTTTTTCAGAAA YpsIP31758_2512 2846749 - 2845901 - | putative acyltransferase TERM 2876 2846483 - 2846471 - G 70 -7.7 -3.79668 | ATGTAATGCATTAAA TTCGC CAA GCGAA TGACCCGCTAAAAAT YpsIP31758_2513 2847096 - 2846848 - | putative acyl carrier protein YpsIP31758_2514 2847574 - 2847134 - | hypothetical protein YpsIP31758_2515 2848449 - 2847661 - | hypothetical protein YpsIP31758_2516 2849204 - 2848452 - | polyketide biosynthesis enoyl-CoA hydratase YpsIP31758_2517 2849925 - 2849206 - | enoyl-CoA hydratase/isomerase family protein TERM 2877 2849640 - 2849630 - G 73 -3.2 -4.87592 | CTAGACAGAATAAAA TCGA CAA CCGA CAGTAAGGCAAGCCC YpsIP31758_2518 2851156 - 2849918 - | putative hydroxymethylglutaryl-coenzyme A synthase TERM 2878 2850294 - 2850306 + g 77 -4.1 -5.03715 | opp_overlap 2850294 AAAATGCTGCCACAA TAGGT CGC GCCTA TTTTTTGCGCGTAAT YpsIP31758_2519 2851909 - 2851172 - | short-chain dehydrogenase/reductase family protein TERM 2879 2851916 - 2851903 - G 73 -2.4 -5.07486 | CACCGCTAATAAAAA GGTT CATGTT AACC ATGATATCGACTAAA YpsIP31758_2520 2853194 - 2851911 - | beta-ketoacyl synthase family protein TERM 2880 2852972 - 2852954 - G 73 -5.2 -4.56597 | TCGTCTGTTTAAAAA CCTTCTCG GCA CGGGAAAG AACTATATCGGGAAT YpsIP31758_2521 2853708 - 2853184 - | thioester dehydratase family protein YpsIP31758_2522 2854292 - 2853972 - | hypothetical protein TERM 2881 2855424 - 2855414 - g 71 -6.8 -4.28548 | AGGGATTGACCAAAA CAGC AGC GCTG GAGGTTGCGACTACT YpsIP31758_2523 2854921 - 2855667 + | oxidoreductase, short chain dehydrogenase/reductase family protein TERM 2882 2856816 - 2856786 - T 71 -9 -3.26947 | opp_overlap 2856784 2856786, overlap 2856789 GAATTCCCACATCAA GACTCGCTTGGGGT TCA AACCCAAACGACTC TATTCCATTGTCAGC TERM 2883 2858260 - 2858279 + T 91 -10.6 -4.08064 | CTCAGCGCCTTATCT CCCCGCCC TGAA GGACGGGG TTTTACGGCGAACTT TERM 2884 2860337 - 2860325 - T 75 -2 -5.29782 | opp_overlap 2860325 TATATCCATAAAAAA TACT TCGTG AGTA TATATTGGATATATA YpsIP31758_2527 2861141 - 2861028 - | hypothetical protein YpsIP31758_2528 2861511 - 2861374 - | hypothetical protein tusE 2861561 - 2861890 + | sulfurtransferase TusE YpsIP31758_2530 2862220 - 2861942 - | acylphosphatase TERM 2885 2862064 - 2862085 + g 73 -9.5 -3.33162 | gap 1 GACGTTCAACTGCTT GTGGATTGCC GCT GGCAA-CCAC TTCTACGCTACCATC TERM 2886 2863430 - 2863455 + G 75 -10.5 -3.2964 | gap 1, opp_overlap 2863420 GAGCAGTTCCGCCAA GCTGCGGATCAC CCA GTGATC-GCGGC TTATCCAGAAGGTTT YpsIP31758_2531 2862314 - 2863504 + | PUA domain-containing protein hspQ 2863565 - 2863882 + | heat shock protein HspQ TERM 2887 2863926 - 2863956 + T 100 -9.7 -5.00616 | overlap 2863927 TGATTGCCAGGTTCG CCACCCTGTGAGC AGCAC GCTGACAGGGTGC TTTTTTAGAAAGCCC TERM 2888 2863927 - 2863955 + T 100 -13.2 -3.60048 | overlap 2863926 GATTGCCAGGTTCGC CACCCTGTGAGC AGCAC GCTGACAGGGTG CTTTTTTAGAAAGCC YpsIP31758_2533 2864407 - 2863991 - | CoA-binding domain-containing protein TERM 2889 2864067 - 2864083 + g 70 -7.9 -3.83844 | TGCAACCCTGCATCG GCAGCCA ATA TGGCAGC TTGTTCATTAATAAC YpsIP31758_2534 2864723 - 2865403 + | hypothetical protein mgsA 2865582 - 2866046 + | methylglyoxal synthase TERM 2890 2866080 - 2866051 - T 86 -11.5 -3.29187 | gap 1, opp_overlap 2866055, overlap 2866046 2866055 ACCTAAAATAGGTAA CT-CACCCGGTGGT TCA ACCACCGGGTTTAG TATTGAGCATCGCTT TERM 2891 2866055 - 2866075 + T 100 -16.9 -3.92592 | opp_overlap 2866046 2866051 2866055 AAAATAGGTAACTCA CCCGGTGGT TCA ACCACCGGG TTTAGTATTGAGCAT TERM 2892 2866075 - 2866055 - T 100 -16.9 -2.58183 | opp_overlap 2866055, overlap 2866046 2866051 AAAATAGGTAACTCA CCCGGTGGT TCA ACCACCGGG TTTAGTATTGAGCAT helD 2868161 - 2866107 - | DNA helicase IV TERM 2893 2868313 - 2868323 + H 71 -2.4 -5.08824 | opp_overlap 2868300 TAGGCTATCGCTCAG CCAC ATT GCGG TTTTTTCACTCAACG YpsIP31758_2537 2868355 - 2868801 + | hypothetical protein TERM 2894 2870234 - 2870256 + G 73 -7.1 -4.19369 | gap 1, opp_overlap 2870236 TCTTGAGGGGCAACT CACC-CTGAT TGTG ATCAGTGGTG TTCTGTTTTTTGCGT TERM 2895 2870668 - 2870641 - g 71 -4 -4.66388 | opp_overlap 2870645, overlap 2870645 2870649 AAAACGATAAAGAAA CTCAGGAAGCGG CATT CCGCTTACTTTG CCTGAACCACACCAT yccS 2868831 - 2870969 + | inner membrane protein YccS TERM 2896 2870979 - 2870997 + T 80 -11.7 -2.63747 | opp_overlap 2870979, overlap 2870978 GCCTAAGGTACCCAA GGGCCAC CCATC GTGGCCC ATTATACGGTTTCAT TERM 2897 2870997 - 2870979 - T 84 -11.7 -3.09933 | opp_overlap 2870978 2870979 GCCTAAGGTACCCAA GGGCCAC CCATC GTGGCCC ATTATACGGTTTCAT tfoX 2871706 - 2871071 - | DNA transformation protein tfoX TERM 2898 2871806 - 2871787 - H 75 -5.8 -4.68506 | AACTAATTGCAAAAA TACGCAAT ATGG ATTACGTA GCCAAACATAAAATG sulA 2871935 - 2872441 + | SOS cell division inhibitor YpsIP31758_2541 2873884 - 2872676 - | IS10, transposase TERM 2899 2874087 - 2874063 - H 71 -5 -4.62336 | ACGGGAGCGTAAAAA CCTTGGCGAA GAATT TTAACCAAGG GCTTAGCTTTTAAAG ompA 2874125 - 2875198 + | outer membrane protein A TERM 2900 2875236 - 2875220 - f 100 -10.8 -4.56597 | opp_overlap 2875220 TTCTTTCGTGAAAAA CCCCGC GCTAT GCGGGG TTTTTTTTGTGCCCA TERM 2901 2875220 - 2875236 + F 100 -11.5 -5.93809 | opp_overlap 2875220 TTCTTTCGTGAAAAA CCCCGCG CTA TGCGGGG TTTTTTTTGTGCCCA TERM 2902 2875275 - 2875257 - f 100 -16 -4.36914 | opp_overlap 2875257 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2903 2875257 - 2875275 + F 100 -16 -3.07307 | opp_overlap 2875257 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_2543 2875337 - 2875846 + | IS1541, transposase TERM 2904 2875920 - 2875952 + T 100 -11.3 -4.04149 | opp_overlap 2875927, overlap 2875924 2875926 2875927 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATCCTGTGATTC TERM 2905 2875924 - 2875948 + T 100 -9.9 -4.60949 | opp_overlap 2875927, overlap 2875920 2875926 2875927 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATCCTGTG TERM 2906 2875926 - 2875946 + T 100 -12.5 -3.90309 | opp_overlap 2875927, overlap 2875924 2875920 2875927 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATCCTG TERM 2907 2875945 - 2875927 - T 100 -16 -4.8048 | opp_overlap 2875926 2875924 2875920 2875927 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCCT TERM 2908 2875927 - 2875945 + T 100 -16 -2.93101 | opp_overlap 2875927, overlap 2875926 2875924 2875920 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCCT YpsIP31758_2544 2876470 - 2876015 - | hypothetical protein TERM 2909 2876395 - 2876407 + g 80 -4.8 -5.0133 | GGCGGGTAATGGCTT CACC TTCAC GGTG TTTTTTGACCAAATA TERM 2910 2877459 - 2877448 - g 75 -5.8 -4.65916 | opp_overlap 2877447 2877448 CCTATTGCAACAAAA GCAG CTCC CTGC CTTATCTGCCGATGC YpsIP31758_2545 2876681 - 2878432 + | hypothetical protein fabA 2878501 - 2879019 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 2911 2879043 - 2879079 + F 79 -6.8 -4.69664 | gap 1, opp_overlap 2879046 2879049, overlap 2879046 AGTCAATGCATTGTA AAATAAGGCGAATATGA TTAA TCATGT-CGCCTTATTG TTTTTACGTGATATA TERM 2912 2879046 - 2879076 + F 87 -8.5 -4.4521 | gap 1, opp_overlap 2879046 2879049, overlap 2879043 CAATGCATTGTAAAA TAAGGCGAATATGA TTAA TCATGT-CGCCTTA TTGTTTTTACGTGAT TERM 2913 2880170 - 2880182 + G 71 -9.1 -3.61232 | opp_overlap 2880168, overlap 2880168 CATTCTTAGTGAATT TGGCC GCT GGCCA TGTTTCTATCAAACA YpsIP31758_2547 2879719 - 2880993 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 2914 2881027 - 2881009 - T 100 -11.7 -4.67942 | opp_overlap 2881004 2881003 CGCAATAAATGAAAA CCTCCGC CTAAT GCGGAGG TTACCCTTGATAATG TERM 2915 2881468 - 2881427 - T 70 -5.9 -4.3851 | overlap 2881428 GATATTAAATAGAAA CCCCCTTCCCCTGACAAGA TGAT TATTACCAGAGAAAGAGGA TTAGACTGATTTAGA YpsIP31758_2548 2882070 - 2881492 - | putative lipoprotein pqiB 2883719 - 2882067 - | paraquat-inducible protein B pqiA 2884992 - 2883706 - | paraquat-inducible protein A uup 2887034 - 2885121 - | ABC transporter ATPase component TERM 2916 2885258 - 2885238 - G 78 -9.1 -4.07568 | opp_overlap 2885257, overlap 2885242 GTGTGGGCGGGAAAA GAAATCAGT ATC ACTGACTTC AGCCTGTAACTTGCT TERM 2917 2885254 - 2885242 - G 77 -6.3 -4.64861 | overlap 2885238 GGGCGGGAAAAGAAA TCAGT ATC ACTGA CTTCAGCCTGTAACT YpsIP31758_2552 2889160 - 2887040 - | 23S rRNA m(2)G2445 methyltransferase YpsIP31758_2553 2889260 - 2890372 + | MOSC/iron-sulfur cluster binding domain-containing protein YpsIP31758_2554 2890949 - 2890398 - | hypothetical protein TERM 2918 2890675 - 2890660 - G 78 -7.6 -4.36914 | GGTTGCTGTACAAAA TGCCAA CTTT TTGGCA TGAGTGGTTTCAAGA pyrD 2892142 - 2891132 - | dihydroorotate dehydrogenase 2 pepN 2895420 - 2892805 - | aminopeptidase N TERM 2919 2895307 - 2895320 + g 75 -3.7 -5.03314 | TTTTACTTTACTGAC CGCCG TTAC CGTCG TTTTTTGCGCATCCA TERM 2920 2895573 - 2895556 - H 93 -4.1 -5.76949 | CAGTTGTAAAAAAAA CCTAGAT GAGA ACCCAGG CGACTCCGGCAAATA TERM 2921 2897052 - 2897037 - g 85 -7.6 -4.77036 | GCGCATTATGAAAAA TTGGGT ATTG ACCCAA TGAAAAAGGTATTGG pncB 2896134 - 2897339 + | nicotinate phosphoribosyltransferase asnS 2897838 - 2899238 + | asparaginyl-tRNA synthetase TERM 2922 2899272 - 2899302 + F 100 -9.8 -5.09426 | opp_overlap 2899275 2899280, overlap 2899273 2899275 2899280 AACGTCAATTTGTAC AAATAAAAGCCAGC TCT GCTGGCTTTTATCA TTTTTTAAAATTCGA TERM 2923 2899273 - 2899301 + F 100 -13.3 -3.64933 | opp_overlap 2899275 2899280, overlap 2899272 2899275 2899280 ACGTCAATTTGTACA AATAAAAGCCAGC TCT GCTGGCTTTTATC ATTTTTTAAAATTCG TERM 2924 2899299 - 2899275 - f 100 -15.9 -3.89614 | opp_overlap 2899275 2899273 2899272 2899280, overlap 2899280 GTCAATTTGTACAAA TAAAAGCCAGC TCT GCTGGCTTTTA TCATTTTTTAAAATT TERM 2925 2899275 - 2899299 + F 100 -15.9 -3.39328 | opp_overlap 2899275 2899280, overlap 2899273 2899272 2899280 GTCAATTTGTACAAA TAAAAGCCAGC TCT GCTGGCTTTTA TCATTTTTTAAAATT TERM 2926 2899294 - 2899280 - f 100 -11.4 -4.99043 | opp_overlap 2899280 2899275 2899273 2899272, overlap 2899275 TTTGTACAAATAAAA GCCAGC TCT GCTGGC TTTTATCATTTTTTA TERM 2927 2899280 - 2899294 + F 100 -11.4 -4.76171 | opp_overlap 2899275 2899280, overlap 2899275 2899273 2899272 TTTGTACAAATAAAA GCCAGC TCT GCTGGC TTTTATCATTTTTTA ompF 2899536 - 2900618 + | outer membrane protein F TERM 2928 2900684 - 2900665 - f 95 -7.8 -5.09426 | opp_overlap 2900665 CCTAAGTTGAAAAAA GACAGGGC CTCG GCTCTGTC TTTTTGTTTCTATTT TERM 2929 2900665 - 2900684 + F 100 -10 -5.48623 | opp_overlap 2900665 CCTAAGTTGAAAAAA GACAGGGC CTCG GCTCTGTC TTTTTGTTTCTATTT TERM 2930 2900730 - 2900746 + F 73 -5.1 -4.62336 | overlap 2900703 2900702 AGATTACTCTGTCTA TCGGC CTATTTT GCCGA TTTTTCACCTCAGAT TERM 2931 2901292 - 2901279 - g 73 -2.3 -5.04325 | GCCAAACCATAAAAA CGTCT TCGA AGCCG CAGGGCTGGAAGTGG YpsIP31758_2560 2900875 - 2902065 + | aromatic amino acid aminotransferase TERM 2932 2902120 - 2902103 - T 100 -11.3 -4.4767 | opp_overlap 2902106 TGACTGACCATAAAA GGATGGC CCAA GCCATCC TTCAGACTGCTGACA TERM 2933 2902210 - 2902184 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2902193, overlap 2902185 2902200 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2934 2902211 - 2902185 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2902193, overlap 2902184 2902200 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2935 2902316 - 2902285 - T 100 -14.6 -2.77013 | opp_overlap 2902292, overlap 2902292 CACTTTGTCAATAAC CTCAAAAGGATGGC CCAA GCCATCCTTTTGAC TGGTCACTCGATGAC TERM 2936 2902292 - 2902309 + T 100 -11.3 -4.21462 | opp_overlap 2902292 2902285 TCAATAACCTCAAAA GGATGGC CCAA GCCATCC TTTTGACTGGTCACT TERM 2937 2902309 - 2902292 - T 100 -11.3 -4.24123 | opp_overlap 2902292, overlap 2902285 TCAATAACCTCAAAA GGATGGC CCAA GCCATCC TTTTGACTGGTCACT TERM 2938 2902395 - 2902366 - T 74 -7.9 -3.94482 | opp_overlap 2902367 2902373, overlap 2902368 2902373 ATAAACGAAAGAGAA CACAAAAGACGCC TTCC GGCATCTTTTGCT ATTGAACATTCATCT TERM 2939 2902393 - 2902368 - T 100 -12.7 -3.53929 | opp_overlap 2902367 2902373, overlap 2902366 2902373 AAACGAAAGAGAACA CAAAAGACGCC TTCC GGCATCTTTTG CTATTGAACATTCAT TERM 2940 2902388 - 2902373 - T 82 -6.8 -4.80729 | opp_overlap 2902367 2902373, overlap 2902368 2902366 AAAGAGAACACAAAA GACGCC TTCC GGCATC TTTTGCTATTGAACA YpsIP31758_2561 2903136 - 2902489 - | metallo-beta-lactamase family protein YpsIP31758_2562 2903745 - 2903197 - | hypothetical protein TERM 2941 2903997 - 2903984 - RH 71 -2.3 -5.08601 | opp_overlap 2903995 TTATTGCAATAAAAA CTCAG CCTG CTGTG AGATTTGTGCACCAG YpsIP31758_2563 2905678 - 2903969 - | hypothetical protein TERM 2942 2904131 - 2904142 + gH 70 -5.8 -4.25859 | GCGGATATTGACGTA GGTG GTAT CACC TTGTTTTACCTTGGA YpsIP31758_2564 2905633 - 2905749 + | hypothetical protein TERM 2943 2906028 - 2906009 - TR 100 -7.1 -5.8096 | opp_overlap 2906009 TACAAAAAATAAAAA TGGCCGC TTCTGT GCGACCA TTTAATAAAACTAAT mukB 2910530 - 2906073 - | cell division protein MukB TERM 2944 2907136 - 2907150 + g 73 -8.5 -3.82603 | TCACGGCGGTGCAAG CGGCG CTCAA CGCCG TTATCTTTCACCATT TERM 2945 2909885 - 2909875 - G 71 -6.8 -4.20367 | overlap 2909876 TCTGGCAATAAATAA TCGC GTA GCGA GCGAGTAATGGCGCT mukE 2911255 - 2910527 - | condesin subunit E mukF 2912558 - 2911236 - | condesin subunit F YpsIP31758_2568 2913340 - 2912555 - | putative metallothionein SmtA TERM 2946 2912970 - 2912938 - G 71 -4.2 -4.7373 | gap 1, opp_overlap 2912938 2912942, overlap 2912941 2912942 2912951 TTAGCGTATCAAAAA GTATTTGCAGAACCT GCTG AGGTTCAGC-AATCC ATTCTAATACCGCAT TERM 2947 2913059 - 2913073 + g 71 -4.2 -4.7373 | overlap 2913061 TTGTATAAATTGCAT GTTGTG GCT CACACC TTTTTCGTGAGCTGC YpsIP31758_2569 2913550 - 2913738 + | hypothetical protein YpsIP31758_2570 2915025 - 2914132 - | hypothetical protein TERM 2948 2915367 - 2915343 - R 100 -12.1 -4.15703 | opp_overlap 2915339 GGTTAGAAATAACAA CGCCAGAGCCC GGT AGGTTCTGGCG TAAAGTTTCCGTCGC kdsB 2916140 - 2915388 - | 3-deoxy-manno-octulosonate cytidylyltransferase YpsIP31758_2572 2916319 - 2916137 - | hypothetical protein YpsIP31758_2573 2916582 - 2916469 - | hypothetical protein TERM 2949 2916861 - 2916841 - R 100 -12.6 -4.00468 | opp_overlap 2916841 ACGAGAAGGGAGAAA CGGCTACC GATGA GGTAGCCG TTTGCTTAGAAAGCG TERM 2950 2916841 - 2916861 + r 100 -12.6 -3.90112 | opp_overlap 2916841 ACGAGAAGGGAGAAA CGGCTACC GATGA GGTAGCCG TTTGCTTAGAAAGCG YpsIP31758_2574 2917076 - 2916867 - | cold shock DNA-binding domain-containing protein TERM 2951 2917192 - 2917207 + H 71 -4.6 -4.70046 | opp_overlap 2917193, overlap 2917193 TGATTTTATGAAAAA ACCGCA TAAT TGCGGG TTTTGTAATTTTGTC TERM 2952 2917206 - 2917193 - H 95 -8.1 -5.15634 | opp_overlap 2917193 2917192 GATTTTATGAAAAAA CCGCA TAAT TGCGG GTTTTGTAATTTTGT TERM 2953 2919197 - 2919166 - g 76 -11 -3.18681 | gap 1, overlap 2919170 2919171 CTGCAACTCTACGAA GCA-ACCCAGCAACG TTC CGTTGCTGAATGTGC AGCCGCCCTCAAACT TERM 2954 2919192 - 2919170 - g 75 -10.6 -3.40639 | overlap 2919166 2919171 AACTCTACGAAGCAA CCCAGCAACG TTC CGTTGCTGAA TGTGCAGCCGCCCTC TERM 2955 2919191 - 2919171 - g 75 -11.9 -2.63901 | overlap 2919170 2919166 ACTCTACGAAGCAAC CCAGCAACG TTC CGTTGCTGA ATGTGCAGCCGCCCT YpsIP31758_2575 2917795 - 2919231 + | hypothetical protein lpxK 2920225 - 2919239 - | tetraacyldisaccharide 4'-kinase TERM 2956 2920031 - 2920041 + g 71 -6.8 -4.19238 | opp_overlap 2920030 TTCAACCAACCAGAT CACC ACC GGTG TTTTACCGTTCCCCC msbA 2921970 - 2920222 - | lipid transporter ATP-binding/permease protein TERM 2957 2921424 - 2921408 - G 74 -6.5 -4.33274 | CTGATATTACGAAAA CGTTTGG ATA CCAGACG GATCGAAATAGACAC comEC 2924297 - 2922006 - | hypothetical protein TERM 2958 2924552 - 2924540 - R 81 -5.5 -5.1101 | opp_overlap 2924540 GTATTAGTCAAAAAA CACGT AGG ACGCG TATTTATGGACGCAT TERM 2959 2924813 - 2924794 - R 100 -7.1 -6.11644 | opp_overlap 2924794 TTACGCAAAAAAAAA CGATGCC GATAAG GGCACCG TTTCGTATCAGCGTT ihfB 2925143 - 2924859 - | integration host factor subunit beta rpsA 2926877 - 2925204 - | 30S ribosomal protein S1 cmk 2927743 - 2927051 - | cytidylate kinase TERM 2960 2927552 - 2927535 - G 74 -4.1 -4.86731 | TTCTGTGAAACAAAA CGAACAT CGAG ATGTGCG GCAAGTGGTACCAAT TERM 2961 2927763 - 2927806 + r 76 -11.2 -2.59881 | opp_overlap 2927768 2927799, overlap 2927762 CTCTCCTTTCGGTAG GCAAACCTCT-TGTCTGCCC CCGGCA GGGCAGACACAGAGGTA-GC ATTATACGCTGCATC TERM 2962 2927802 - 2927768 - R 100 -15.9 -3.64703 | gap 1, opp_overlap 2927763 2927762, overlap 2927799 CTTTCGGTAGGCAAA CCTCT-TGTCTGCCCC CGGC AGGGCAGACACAGAGG TAGCATTATACGCTG aroA 2929342 - 2928056 - | 3-phosphoshikimate 1-carboxyvinyltransferase serC 2930605 - 2929520 - | phosphoserine aminotransferase TERM 2963 2930870 - 2930856 - R 75 -8.6 -3.86015 | opp_overlap 2930856 GACTGGGGTGACAAA TCTGCT GGG AGCAGA TTTGAACGCTGCTTG TERM 2964 2930856 - 2930870 + r 71 -8.6 -3.56568 | opp_overlap 2930856 GACTGGGGTGACAAA TCTGCT GGG AGCAGA TTTGAACGCTGCTTG YpsIP31758_2584 2932819 - 2930972 - | hypothetical protein YpsIP31758_2585 2933934 - 2932840 - | putative haemagglutinin/invasin TERM 2965 2932895 - 2932874 - G 81 -12.3 -3.0264 | overlap 2932864 AAACCCGCTGCAACA CCGACACCG CCTT CAGTGTCGG CAGAAACATTGACTC TERM 2966 2933580 - 2933605 + g 75 -6.1 -4.49958 | opp_overlap 2933582, overlap 2933583 CAACACCCGCTTTAA CACCGGTTATC TGGC GATCACCGATG TTTATTTCATCAGAT TERM 2967 2934178 - 2934208 + r 83 -11.2 -3.57144 | opp_overlap 2934178 ATTTTTATTTCTAAA TGAATACCACGCCC TAT GGACGTAGTATTCA TTTAGAAATAAAAAG TERM 2968 2934208 - 2934178 - R 100 -15.6 -3.57263 | opp_overlap 2934178 ATTTTTATTTCTAAA TGAATACCACGCCC TAT GGACGTAGTATTCA TTTAGAAATAAAAAG ansB 2935290 - 2934253 - | L-asparaginase II TERM 2969 2936072 - 2936059 - g 81 -8.1 -4.62069 | GCGTTATGTGAAAAA CCGCA TTAT TGCGG AGTCCATCAGCTTGC YpsIP31758_2587 2935439 - 2937205 + | hypothetical protein YpsIP31758_2588 2937902 - 2938759 + | formate transporter TERM 2970 2939237 - 2939223 - g 77 -2.8 -5.1925 | overlap 2939215 CCACAACTGAAAAAA GTCTTC ACC GAATAC CGTAAAACACATAAC pflB 2938815 - 2941097 + | formate acetyltransferase TERM 2971 2941131 - 2941151 + T 100 -13.3 -4.3255 | opp_overlap 2941131 TGTTACAACATGAAA GGCTCCACA TAT TGTGGGGCC TTTATTCATTCAGAG TERM 2972 2941151 - 2941131 - T 90 -11.1 -3.97088 | opp_overlap 2941131 TGTTACAACATGAAA GGCTCCACA TAT TGTGGGGCC TTTATTCATTCAGAG YpsIP31758_2590 2941889 - 2941215 - | LPS glycosyltransferase family protein pflA 2942876 - 2943610 + | pyruvate formate lyase-activating enzyme 1 TERM 2973 2943684 - 2943722 + T 83 -11.2 -3.43033 | gap 3, opp_overlap 2943687 2943688, overlap 2943688 TTAGGTTTGGCCTAA CAACTGCCGCCATGCTGGA TGAA TCC-GC-TGGCGGC-GTTG TCTTATATATTGATA TERM 2974 2943688 - 2943719 + T 81 -9.5 -3.83668 | gap 2, opp_overlap 2943687 2943688, overlap 2943684 GTTTGGCCTAACAAC TGCCGCCATGCTGGA TGAA TCC-GC-TGGCGGCG TTGTCTTATATATTG YpsIP31758_2592 2944912 - 2943764 - | putative MFS family transporter protein TERM 2975 2945100 - 2945078 - R 95 -4.9 -5.76633 | gap 1, opp_overlap 2945083, overlap 2945083 GGATACACAAAAAAA GAAAAGCGCC CGTA GACGCTTT-C GAAATAGCAGATAAC TERM 2976 2945096 - 2945083 - R 95 -5.9 -5.61277 | opp_overlap 2945083, overlap 2945078 CACAAAAAAAGAAAA GCGCC CGTA GACGC TTTCGAAATAGCAGA serS 2946435 - 2945143 - | seryl-tRNA synthetase TERM 2977 2945925 - 2945937 + g 74 -9.1 -3.72576 | GAGCACGGTGCATAC GGGCA ATT TGCCC TTTCATCACCACAAA TERM 2978 2946001 - 2945991 - G 71 -8.2 -3.71672 | opp_overlap 2945991 2945990 CGGCAGCAAAATCAA GGCC ACC GGCC ATTTCGCCCAGAGAA TERM 2979 2946664 - 2946688 + r 93 -9.9 -4.39828 | opp_overlap 2946653 2946652 2946676 TAATGCTAACCTTAC CGCAACCGCAA AGC TAGCGGTAGCG TTTTATCGGGCTATT rarA 2948020 - 2946677 - | recombination factor protein RarA TERM 2980 2947026 - 2947009 - G 74 -6.3 -4.44046 | CGCAGGCTAAATAAA CAATTGC CTGG GCAATCG CCCGCTCCCCTTCGG TERM 2981 2947973 - 2947956 - G 79 -10.5 -3.6715 | opp_overlap 2947954 TGATCCAACGTCAAA GGCCGCA TACG CGCGGCC AGTGGTTGAAACTCA lolA 2948639 - 2948031 - | outer-membrane lipoprotein carrier protein ftsK 2952761 - 2948829 - | DNA translocase FtsK TERM 2982 2950776 - 2950757 - G 83 -10 -4.14004 | opp_overlap 2950769 CAACATAAGGAGAAA GCGTGAAC AGAG GCTCACGC GGGCTGTCATCGACT TERM 2983 2951097 - 2951067 - G 71 -9.1 -3.57144 | gap 1, opp_overlap 2951084 2951086, overlap 2951068 2951083 TTGCTGATCGGCAAA CGCTTTGC-GCAAG ATAG CCTGCTGCAAAGCA GCATCTTCATCAGAT TERM 2984 2951086 - 2951100 + g 70 -10 -3.15346 | opp_overlap 2951068 2951067 2951083, overlap 2951084 2951099 TTGCGCAAGATAGCC TGCTGC AAA GCAGCA TCTTCATCAGATGTT TERM 2985 2951260 - 2951291 + g 71 -5 -4.54026 | opp_overlap 2951258, overlap 2951264 2951279 GTTGGAATACGAACC GGATTTGGCCGTGG CAAT TCAGGGCCAATACC TTGTTTTATTTGGGA TERM 2986 2951279 - 2951294 + g 70 -2.5 -4.87133 | opp_overlap 2951258, overlap 2951264 2951260 TTGGCCGTGGCAATT CAGGG CCAATA CCTTG TTTTATTTGGGAGCT TERM 2987 2952004 - 2951969 - G 71 -3.9 -4.77165 | GGGCTGAGAACAAAA CGTCATCATCGCCAT GGGCTA ACGCCGATGAGGCCG CAACACCCGCCCCCA TERM 2988 2952826 - 2952800 - R 100 -15.2 -3.14463 | opp_overlap 2952796, overlap 2952803 AACGGGTCTGAGCAA CAACGCCGAGAA GCC TCCCCGGCGTTG AAACTGTATGAATAA TERM 2989 2952823 - 2952803 - R 84 -11.1 -3.71848 | opp_overlap 2952796, overlap 2952800 GGGTCTGAGCAACAA CGCCGAGAA GCC TCCCCGGCG TTGAAACTGTATGAA lrp 2953378 - 2952884 - | leucine-responsive transcriptional regulator TERM 2990 2954059 - 2954079 + H 90 -4 -5.59357 | opp_overlap 2954059 CCTATCAAAAAAATT GCTAACAA CATTT TTGTTTGC TTTTTTTAATGTCAT trxB 2954146 - 2955108 + | thioredoxin-disulfide reductase TERM 2991 2955166 - 2955190 + T 100 -9.2 -5.53079 | overlap 2955167 TTCACCTCGTTCTAT ACGGGTGGCT ACATG GGCCACCCGC TTTTTTATCTGTTTT TERM 2992 2955167 - 2955189 + T 100 -12.7 -3.88187 | overlap 2955166 TCACCTCGTTCTATA CGGGTGGCT ACATG GGCCACCCG CTTTTTTATCTGTTT YpsIP31758_2599 2955350 - 2955213 - | hypothetical protein TERM 2993 2955627 - 2955616 - g 88 -7.2 -5.04249 | overlap 2955618 GGCTGAAAAAACAAA GCGC CCCC GCGC AACGTTGGCTCCGCC TERM 2994 2956414 - 2956435 + G 79 -3.7 -5.19212 | gap 1, overlap 2956415 2956415 TTGGTAGCTATGGCC TCGGCGTAAC GCT GTT-TGCCGG TTTTTTGGTGCTAAT TERM 2995 2957167 - 2957145 - g 95 -14.8 -3.72893 | CAGTTGGTGATGAAA GCGCTGGAGG AGG CCTCCCGCGC GCAGTCTACCCTGCT cydD 2955567 - 2957333 + | cysteine/glutathione ABC transporter membrane/ATP-binding component cydC 2957336 - 2959060 + | cysteine/glutathione ABC transporter membrane/ATP-binding component YpsIP31758_2602 2959251 - 2959138 - | hypothetical protein aat 2959279 - 2959989 + | leucyl/phenylalanyl-tRNA--protein transferase infA 2960155 - 2960373 + | translation initiation factor IF-1 TERM 2996 2960432 - 2960457 + F 100 -13.3 -4.36778 | overlap 2960449 GTAGTCCCCCTCCGG CGCCCTTCCCA TTTA TGGCAAGGGCG TTTTGCGTTATCTTT TERM 2997 2960672 - 2960645 - g 100 -10.7 -5.06414 | gap 1, opp_overlap 2960645 CGTTGGCAATAAAAA GGGCGATACGCT GTTTT AGC-TATCGCCC TTTATTTTACTGGAT TERM 2998 2960645 - 2960672 + G 100 -11.4 -4.7261 | gap 1, opp_overlap 2960645 CGTTGGCAATAAAAA GGGCGATACGCTG TTT TAGC-TATCGCCC TTTATTTTACTGGAT YpsIP31758_2605 2960632 - 2960784 + | hypothetical protein clpA 2963062 - 2960786 - | ATP-dependent Clp protease ATP-binding subunit TERM 2999 2962843 - 2962869 + g 73 -7.3 -4.20516 | overlap 2962846 GGGTATCACGCTCTT CTTCACTGACA GGTAG TGTCGGTGTAG TTTGTTCGATAAACG TERM 3000 2963081 - 2963093 + r 71 -4.8 -4.58395 | CACCTCCCAATAATT GCCT TAATC AGGC TTTTTCCAGCGTACA clpS 2963408 - 2963088 - | ATP-dependent Clp protease adaptor protein ClpS TERM 3001 2963330 - 2963353 + gr 78 -6 -4.73432 | gap 1, opp_overlap 2963330 2963335 GTATCACTTTATACA TCGAAGGCGGT TGA AGCGCCT-CGA TTTGTTTATCTTTGA YpsIP31758_2608 2963583 - 2963377 - | hypothetical protein TERM 3002 2963802 - 2963816 + G 80 -8.6 -4.44046 | opp_overlap 2963801 2963802 AAATGGTTCAACAAC GCCAAA GGT TTTGGC TTTATTTGCCCTGAG cspD 2963769 - 2964032 + | cold shock domain-containing protein CspD TERM 3003 2964135 - 2964168 + T 81 -11.2 -3.38671 | opp_overlap 2964141, overlap 2964141 TACCTGTACTTTGAT TCAAAATGCCAGTC AATGAC GACTGGCATTTTTA TGTTATCTACTTCTA TERM 3004 2964141 - 2964162 + T 100 -10.2 -5.1764 | opp_overlap 2964141, overlap 2964135 TACTTTGATTCAAAA TGCCAGTC AATGAC GACTGGCA TTTTTATGTTATCTA TERM 3005 2964162 - 2964141 - T 93 -10.9 -4.18494 | opp_overlap 2964135 2964141 TACTTTGATTCAAAA TGCCAGTCA ATGA CGACTGGCA TTTTTATGTTATCTA macB 2966279 - 2964330 - | macrolide transporter ATP-binding /permease protein TERM 3006 2966044 - 2966020 - G 70 -2 -4.83677 | overlap 2966021 AAAATAAAACCAAAA TGTTCACGGC GCAGT GCCGCCAACG CATCGTCATCCAACT macA 2967391 - 2966279 - | macrolide transporter subunit MacA YpsIP31758_2612 2967420 - 2967596 + | hypothetical protein YpsIP31758_2613 2967624 - 2968571 + | hypothetical protein YpsIP31758_2614 2970375 - 2968708 - | hypothetical protein TERM 3007 2968963 - 2968946 - G 77 -2.6 -5.24129 | GCGCGGTATAAAAAA TGCTCC ATATCG GGTGCA GGCAAAATTGTTAGG TERM 3008 2969526 - 2969538 + g 83 -9.1 -4.42238 | GGGCATGAGGATCGA GGCTC AGT GAGCC TTTTGCTTGCAATAA TERM 3009 2970050 - 2970064 + g 78 -5.7 -4.72201 | opp_overlap 2970050 ACTCGATAGTAGATA CGATG TAACC CATCG TTATTTTTTATCCAC YpsIP31758_2615 2970543 - 2970665 + | hypothetical protein YpsIP31758_2616 2970728 - 2971624 + | hypothetical protein TERM 3010 2971657 - 2971669 + F 76 -6.9 -4.41494 | overlap 2971651 GTCGCCCCCCCCCCC GCCCT CTG GGGGC TTTTCCTTCCCGATA TERM 3011 2972021 - 2972033 + G 73 -3.3 -4.83615 | overlap 2972017 CCAAATTGACAGCTT TGCCC CCA GAGCA TTTTTCTCAACGCTG hcp 2971827 - 2973479 + | hydroxylamine reductase TERM 3012 2973494 - 2973528 + F 76 -10 -3.39288 | overlap 2973492 2973524 AGTTAATTATACCTT GCCTGGTCAATCGC CTTTCTC GCCGTTGACCGGGC TATTATTGCACGCTG TERM 3013 2974459 - 2974475 + G 70 -7.9 -3.94409 | AATACCGGTTATGGC CGCCTGC CGC GCGGGTG TTTGTGGCTCATGTA hcr 2973593 - 2974615 + | HCP oxidoreductase, NADH-dependent TERM 3014 2976288 - 2976303 + G 71 -9 -3.58343 | opp_overlap 2976299 CTCTGAGTTAAATGC GGCACT GGAA AGTGCC TTTGCACATCCTGGC poxB 2974759 - 2976480 + | pyruvate dehydrogenase TERM 3015 2976774 - 2976748 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2976757, overlap 2976749 2976764 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3016 2976775 - 2976749 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2976757, overlap 2976748 2976764 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT ltaE 2976923 - 2977942 + | L-threonine aldolase YpsIP31758_2621 2977939 - 2979429 + | NAD dependent epimerase/dehydratase family protein TERM 3017 2979722 - 2979712 - g 71 -6.8 -4.2349 | TCCTCACAGGCAAAA GCCA TGC TGGC GGATGTCGATACGCT YpsIP31758_2622 2979529 - 2980536 + | NAD-dependent epimerase/dehydratase family protein YpsIP31758_2623 2980633 - 2981208 + | putative lipoprotein YpsIP31758_2624 2981378 - 2981938 + | chorismate mutase TERM 3018 2981969 - 2981997 + F 78 -8.8 -3.89354 | GGCCACACATCTTTC GTACCGGGTTCC TTCCC GTGGCCCGGTAC TTATTGATTTACAAA artP 2982233 - 2982961 + | arginine transporter ATP-binding subunit artI 2982982 - 2983713 + | arginine ABC transporter, periplasmic substrate-binding protein ArtI TERM 3019 2983744 - 2983779 + G 82 -10.4 -3.89346 | gap 1, opp_overlap 2983750, overlap 2983745 ATGAATTTCAACCTT TAGCAAGTGCCGCCGGT ATG ACCGTCGGC-CTTGCCG TTTGTGCACTGGCAC TERM 3020 2983745 - 2983778 + G 78 -11.7 -2.93393 | gap 1, opp_overlap 2983750, overlap 2983744 TGAATTTCAACCTTT AGCAAGTGCCGCCGGT ATG ACCGTCGGC-CTTGCC GTTTGTGCACTGGCA artQ 2983725 - 2984441 + | arginine transporter permease subunit ArtQ artM 2984441 - 2985109 + | arginine transporter permease subunit ArtM TERM 3021 2985136 - 2985170 + G 91 -12.2 -3.90112 | opp_overlap 2985135 2985134 CCTTATGCGACAACG CCGGATCATCAACCAG AAA TTGCGTGATGATCCGG TTTCCTTAACGCCCC YpsIP31758_2629 2985125 - 2985274 + | hypothetical protein YpsIP31758_2630 2986144 - 2985299 - | integral membrane protein YpsIP31758_2631 2987469 - 2986141 - | hypothetical protein YpsIP31758_2632 2988259 - 2987462 - | hypothetical protein YpsIP31758_2633 2989032 - 2988247 - | iron chelate ABC transporter ATP-binding protein TERM 3022 2988310 - 2988320 + g 71 -8.2 -3.70919 | CAATAAGTAGCGATA GCCC AAA GGGC TTGTTCCACTTTCGA YpsIP31758_2634 2990087 - 2989029 - | iron chelate ABC transporter permease protein YpsIP31758_2635 2991178 - 2990087 - | iron chelate ABC transporter periplasmic iron/siderophore-binding protein TERM 3023 2990241 - 2990230 - G 71 -3 -4.89393 | CAAACTGCACAAAAA TGTA GTCG TACA ACGTGCGGACGCCGC TERM 3024 2990267 - 2990280 + g 71 -4.5 -4.49556 | GCCGCCATGATAGAG CGCGT AAAA ACGTG TTTGTTTAATCGCGG TERM 3025 2990485 - 2990469 - G 91 -13.7 -3.32844 | opp_overlap 2990462 2990460 GCGCGCAGTGGAGAA GGCGTGG TGA CCACGCC TGTCGCGATATTGTT TERM 3026 2991562 - 2991527 - R 100 -11.8 -5.35459 | opp_overlap 2991523 ACAGATGATAAAAAA GCCCACTACACCACGA ATCT CCATGGGGAAGTGGGC TTCAGATTTATTGAT YpsIP31758_2636 2992517 - 2991591 - | SPFH/band 7 family protein TERM 3027 2992886 - 2992870 - R 71 -6.7 -4.21974 | opp_overlap 2992852, overlap 2992853 2992852 TTATCATTTAACAAA TGATAAT GAA ATTATCA CCATGCTAATACCAG YpsIP31758_2637 2993004 - 2992858 - | hypothetical protein YpsIP31758_2638 2993167 - 2993051 - | hypothetical protein artJ 2993286 - 2994017 + | arginine ABC transporter, periplasmic substrate-binding protein ArtJ rumB 2995274 - 2994144 - | 23S rRNA methyluridine methyltransferase TERM 3028 2994689 - 2994701 + g 74 -9.1 -3.67597 | opp_overlap 2994684, overlap 2994686 CCTGATTAAACCGCT CAGGC AGG GCCTG TTGTTCGGTCAGCGG TERM 3029 2995255 - 2995240 - G 82 -10.4 -3.83226 | opp_overlap 2995238 AACCACTGACAAGAA CGGCAG CGAC CTGCCG CATACTGTGCGCAAT YpsIP31758_2641 2995822 - 2995358 - | hypothetical protein TERM 3030 2995913 - 2995890 - R 100 -15.4 -3.30124 | overlap 2995893 TGTTATCTCTCACAA TAACGCCGCT CTAA AGCGGCGTTA AAGGAGACGAAAGAC TERM 3031 2995910 - 2995893 - R 100 -12.7 -3.7941 | overlap 2995890 TATCTCTCACAATAA CGCCGCT CTAA AGCGGCG TTAAAGGAGACGAAA potI 2996792 - 2995947 - | putrescine transporter subunit: membrane component of ABC superfamily potH 2997754 - 2996789 - | putrescine transporter subunit: membrane component of ABC superfamily potG 2998912 - 2997779 - | putrescine transporter ATP-binding subunit potF 3000192 - 2999083 - | putrescine transporter subunit: periplasmic-binding component of ABC superfamily TERM 3032 2999113 - 2999128 + g 71 -10.4 -2.75577 | overlap 2999110 2999109 AACTTTTGTCCAGGC CCGGGT GATG ACCCGG TCAATTTTCGGATCC TERM 3033 2999571 - 2999561 - G 71 -6.8 -4.25458 | opp_overlap 2999566 AACTTCAGCAATAAA TCCG TCG CGGA GCCCGTGTAATCGGC TERM 3034 2999850 - 2999863 + g 70 -2.3 -4.98857 | opp_overlap 2999851, overlap 2999851 TGACCAGCGCCAGTA ACTCG GGGT CGAGA TTTTTCTCATTCGGT TERM 3035 3000651 - 3000615 - R 71 -5 -4.74013 | gap 1, opp_overlap 3000617 3000618 3000620, overlap 3000617 3000618 CGTAAATAGAGAAAA TAG-CCGCGTGCCGCTG ATAT CTGCGGCACACTGTCTT TATTCGGACACGCTC TERM 3036 3000648 - 3000617 - R 74 -7.8 -3.97364 | opp_overlap 3000617 3000618 3000620, overlap 3000615 3000618 TAAATAGAGAAAATA GCCGCGTGCCGCTG ATAT CTGCGGCACACTGT CTTTATTCGGACACG TERM 3037 3000647 - 3000618 - R 83 -11.3 -2.96792 | opp_overlap 3000617 3000618 3000620, overlap 3000617 3000615 AAATAGAGAAAATAG CCGCGTGCCGCTG ATAT CTGCGGCACACTG TCTTTATTCGGACAC TERM 3038 3000618 - 3000647 + r 75 -9.1 -3.6761 | opp_overlap 3000618 3000617 3000615, overlap 3000617 3000620 AAATAGAGAAAATAG CCGCGTGCCGCTG ATAT CTGCGGCACACTG TCTTTATTCGGACAC TERM 3039 3000620 - 3000645 + r 80 -10.3 -3.41738 | opp_overlap 3000618 3000617 3000615, overlap 3000618 3000617 ATAGAGAAAATAGCC GCGTGCCGCTG ATAT CTGCGGCACAC TGTCTTTATTCGGAC YpsIP31758_2646 3001209 - 3000724 - | hypothetical protein TERM 3040 3001302 - 3001328 + r 76 -9.5 -3.41013 | TCCCGACTAATTTGA TATCTGGGCCG TTCCT CGGCTTAGATA TTCTCAATGTGCTTA YpsIP31758_2647 3001665 - 3001351 - | hypothetical protein TERM 3041 3002292 - 3002279 - g 80 -4.5 -5.03314 | overlap 3002290 3002291 CTGATCTGGAAAAAA CGGTC GGTA AACCG GTTGAAACCGTGCCA grxA 3002128 - 3002391 + | glutaredoxin 1 TERM 3042 3002448 - 3002432 - f 95 -12.3 -3.33492 | opp_overlap 3002432 GCATTTATCCGATAA GGGTGTC CAA GACACCC TTTCTTTATTGCTGG TERM 3043 3002432 - 3002448 + F 100 -12.3 -4.70887 | opp_overlap 3002432 GCATTTATCCGATAA GGGTGTC CAA GACACCC TTTCTTTATTGCTGG TERM 3044 3003306 - 3003323 + G 75 -7.7 -4.18197 | CCCTGACTTATCTTA TCGGGCT GGTT AGCCTGA TTTTAGGTGCGCGCT YpsIP31758_2649 3002801 - 3004489 + | hypothetical protein YpsIP31758_2650 3004822 - 3005637 + | hypothetical protein YpsIP31758_2651 3005637 - 3006242 + | undecaprenyl pyrophosphate phosphatase TERM 3045 3006268 - 3006292 + F 100 -17.3 -2.91264 | GTATTCGCTTCACAC TTGCCGGTTAG TCT CTAACCGGCAA TCTCTCCATGCGCCC deoC2 3006500 - 3007171 + | deoxyribose-phosphate aldolase TERM 3046 3007312 - 3007339 + F 88 -9.2 -4.36554 | ATTTTGTCAGTAGTC TGAGCCCGGT CCACAATT ACCGGGCTTA TTTATTATCGTACTG YpsIP31758_2653 3007401 - 3008165 + | DNA-binding transcriptional repressor DeoR TERM 3047 3008325 - 3008338 + T 70 -3.9 -4.83615 | opp_overlap 3008325 CGCTATGTTGGCAAA TAATC CATA GATTA TTTTTATACAGAATC YpsIP31758_2654 3009072 - 3008956 - | hypothetical protein YpsIP31758_2655 3009086 - 3009199 + | hypothetical protein TERM 3048 3010035 - 3010056 + G 79 -9.5 -3.82486 | opp_overlap 3010037 GAGCTTTGCCCACAT CATGATGGT TATC ACCGTCATG TTCTTCGTCTTCAGT TERM 3049 3010382 - 3010368 - g 74 -10 -3.59979 | TGTCGCGACCTTAAA CCCAAG TAT CTTGGG GATGATCGAAACATT sdaC 3009265 - 3010566 + | serine transporter YpsIP31758_2657 3010695 - 3010579 - | hypothetical protein TERM 3050 3010619 - 3010651 + gT 100 -5.6 -5.54403 | gap 1, overlap 3010621 CGTTTGATTAACCGC T-CCAGGCTGGCC ACTTCCAC GGCCAGCCTGTTA TTTTTCTTCTTTTTT TERM 3051 3010621 - 3010648 + gT 100 -14.2 -4.74161 | overlap 3010619 TTTGATTAACCGCTC CAGGCTGGCC ACTTCCAC GGCCAGCCTG TTATTTTTCTTCTTT YpsIP31758_2658 3010804 - 3010667 - | hypothetical protein TERM 3052 3010870 - 3010889 + r 95 -9.3 -4.45693 | opp_overlap 3010870 GAAACATCCTGAAAA GCGCGAT AGTCAC ATCGCGC TTTCTATTTATGTTA TERM 3053 3010889 - 3010870 - R 88 -10 -4.15543 | opp_overlap 3010870 GAAACATCCTGAAAA GCGCGATA GTCA CATCGCGC TTTCTATTTATGTTA YpsIP31758_2659 3012225 - 3011023 - | D-alanyl-D-alanine carboxypeptidase TERM 3054 3011485 - 3011459 - G 87 -10.9 -4.08887 | opp_overlap 3011471 ACCACGGAAATCAAA CGCATCGGC CCATCTGTC GCCGATGCG ACCAAATTATACCCC YpsIP31758_2660 3013231 - 3012560 - | ABC transporter, permease protein TERM 3055 3013029 - 3013017 - G 73 -5.5 -4.55625 | AGTAACACCACAAAA GGCAT TGA ACGCC CCACATTGACCAGTG YpsIP31758_2661 3014214 - 3013228 - | ABC transporter, ATP-binding protein TERM 3056 3013311 - 3013286 - G 71 -9.1 -3.54307 | gap 1 AACACTTCGGCTAAA TTCAACCCGCCC TCT GGACG-GTTGAA ATCAACGTGCAAGCG TERM 3057 3013751 - 3013735 - G 73 -10.1 -3.15013 | opp_overlap 3013734, overlap 3013733 3013731 ATCTGATAACAGATA TGACGGC TTA GCCGCCA ATGCTCTGGCGATCC YpsIP31758_2662 3015035 - 3014211 - | NLPA family lipoprotein YpsIP31758_2663 3016330 - 3015263 - | 2OG-Fe(II) oxygenase family oxidoreductase TERM 3058 3015441 - 3015416 - G 77 -10.5 -3.494 | CAATGCGGCAGATAA TGGATACAGTG GCAC CACCGCATCCA AACGCGCACCTAAAA TERM 3059 3015908 - 3015939 + g 71 -7.2 -3.99324 | CCATTGGTTCGGGCC TTGCAGCCGTGTCC AACT GGGTGCGCCTGCGA TTTGTGGTAATGGGG TERM 3060 3017191 - 3017203 + G 75 -10.5 -3.37622 | CGCGAAACACTTTGC CGCCG ATA CGGCG TTATCAATCGGTGTT YpsIP31758_2664 3016817 - 3017479 + | HAD family hydrolase YpsIP31758_2665 3017684 - 3018304 + | putative glutathione S-transferase TERM 3061 3018399 - 3018349 - T 85 -9.3 -4.07885 | gap 1, overlap 3018350 CATTGCTGGTCAAAA TCCCGAATCACTTACTTATT-TTA AAGT CAACAACCAGTAAGTGATTCGGGT AAGTGCGCGCAGCTA TERM 3062 3018398 - 3018350 - T 95 -12.8 -3.04517 | gap 1, overlap 3018349 ATTGCTGGTCAAAAT CCCGAATCACTTACTTATT-TTA AAGT CAACAACCAGTAAGTGATTCGGG TAAGTGCGCGCAGCT YpsIP31758_2666 3020572 - 3018575 - | putative outer membrane receptor TERM 3063 3019139 - 3019127 - G 71 -9.1 -3.494 | opp_overlap 3019130, overlap 3019130 GAAGTCGGTATAGAA CAGCG TCA CGCTG GCGTTCATCCCTTCC TERM 3064 3019229 - 3019243 + g 71 -7 -4.07568 | opp_overlap 3019228 3019229, overlap 3019230 ATTACCCAGAATAAG TGCGGG AAG CCCGCC TTTTCCCCCACCAGA TERM 3065 3019230 - 3019242 + g 72 -10.5 -3.04398 | opp_overlap 3019228 3019229, overlap 3019229 TTACCCAGAATAAGT GCGGG AAG CCCGC CTTTTCCCCCACCAG TERM 3066 3019706 - 3019689 - G 72 -5.7 -4.3534 | opp_overlap 3019701, overlap 3019701 GTTGAATTACCAAAA TCATAAT AACC ATTATGA GTAACCGCATAATTA YpsIP31758_2667 3021620 - 3020832 - | iron chelate ABC transporter ATP-binding protein YpsIP31758_2668 3022699 - 3021617 - | iron chelate ABC transporter permease TERM 3067 3021800 - 3021786 - G 83 -6.4 -4.8622 | overlap 3021787 GCTGGTAAGTAAAAA CGGTGA TCT TCACCA AAAATCATGCGTGCG YpsIP31758_2669 3024063 - 3022894 - | putative ABC transporter, periplasmic iron siderophore/cobalamin-binding protein TERM 3068 3024103 - 3024089 - R 70 -5.8 -4.26832 | overlap 3024097 TAACAATAAAGCAAA TGATAA TAC TTATCA ATAAGATTGCCATAA TERM 3069 3024245 - 3024206 - R 89 -11.6 -3.51924 | gap 1, opp_overlap 3024208 3024216 TGTTCACGGATAGAA TG-CGCTAATACCAGCACA TTT CGTACTGGTATTGGCGTCA GTTACCGCTAATTTA TERM 3070 3024208 - 3024242 + r 91 -13.7 -2.53382 | opp_overlap 3024206, overlap 3024216 TTCACGGATAGAATG CGCTAATACCAGCAC ATTTC GTACTGGTATTGGCG TCAGTTACCGCTAAT TERM 3071 3024294 - 3024275 - R 100 -12.2 -4.01902 | opp_overlap 3024275 ATAGGCACTAAAGAA GGGCGATA GCGT TATCGCCC TTTCATCCGCACGTT TERM 3072 3024275 - 3024294 + r 93 -12.2 -3.73072 | opp_overlap 3024275 ATAGGCACTAAAGAA GGGCGATA GCGT TATCGCCC TTTCATCCGCACGTT lysP 3025836 - 3024325 - | lysine transporter TERM 3073 3024921 - 3024905 - G 73 -8.7 -3.79419 | opp_overlap 3024904 3024905 CCCGCCGATAAAACA GCGGTCA AAA TAACCGC ATTCATCACTGCCGC YpsIP31758_2671 3026092 - 3025946 - | hypothetical protein YpsIP31758_2672 3026966 - 3026094 - | putative DNA-binding transcriptional regulator TERM 3074 3026240 - 3026207 - G 91 -13.3 -3.44334 | gap 1, opp_overlap 3026217, overlap 3026221 GTAAAGGAATATTAA GCTCGACCAACTCACC GCT GGCGAGTTGATC-AGC AATCACTCGCCGCGA TERM 3075 3027366 - 3027349 - R 71 -3.3 -4.94811 | overlap 3027341 3027351 CGAAAAATAAATAAA GGCTGCG GTTA CACAGAC TTATTTACAGTTTCA YpsIP31758_2673 3027526 - 3027371 - | hypothetical protein YpsIP31758_2674 3027624 - 3028712 + | hypothetical protein TERM 3076 3028776 - 3028799 + F 100 -13.2 -3.75332 | overlap 3028779 CTAAAACAAACCGTT TAAGGGCCGT ATCC GCGGCCCTTA TTTCCCTTCACCGCT TERM 3077 3028779 - 3028796 + F 89 -10.5 -4.0098 | overlap 3028776 AAACAAACCGTTTAA GGGCCGT ATCC GCGGCCC TTATTTCCCTTCACC TERM 3078 3029400 - 3029390 - g 88 -8.2 -4.6821 | opp_overlap 3029389 3029390 AAGTGGAAGATAAAA GCCG CGT CGGC GTCTGTATTGATACC nfo 3028876 - 3029733 + | endonuclease IV TERM 3079 3029767 - 3029743 - T 100 -11.4 -4.4715 | overlap 3029745 TTGTAACGTAGAAAA TGCCCGCCAG TAAAC CTGGCGGGAA TTGAACCTGACGGGA TERM 3080 3029765 - 3029745 - T 93 -14 -2.56203 | overlap 3029743 GTAACGTAGAAAATG CCCGCCAG TAAAC CTGGCGGG AATTGAACCTGACGG YpsIP31758_2676 3032291 - 3029820 - | fimbrial usher protein TERM 3081 3031603 - 3031591 - G 75 -3.3 -5.00884 | overlap 3031592 ATGCTGTCGAAAAAA TCACC TGG GGTGT AACTCTCCCCTAAGG YpsIP31758_2677 3033196 - 3032375 - | pili assembly chaperone TERM 3082 3032493 - 3032481 - G 74 -4.1 -4.90079 | ACCGGAATAATAAAA TCCCT AGA AGAGA ATGGCGGAACATAGC TERM 3083 3032495 - 3032513 + g 91 -3.8 -5.68438 | ATCCCTAGAAGAGAA TGGCGG AACATAG CTGCCA TTTTTTATTTCATCC TERM 3084 3033257 - 3033223 - R 95 -14 -2.84192 | opp_overlap 3033215 CACATTATCATGATA TTTTATTGTGAATTTT AAA AAAACTCACAATAAAA CATCAATAACAAAAA TERM 3085 3033314 - 3033273 - R 89 -6.7 -5.31855 | opp_overlap 3033276 3033277 3033279, overlap 3033275 3033277 CATCAATAACAAAAA CATACATAGAACATGACAG CAAG CCATCATGTTCTATGATTA CTCGTTATTTAAAAT TERM 3086 3033311 - 3033275 - R 86 -9 -4.27297 | gap 1, opp_overlap 3033276 3033277 3033279, overlap 3033273 3033277 TCAATAACAAAAACA TACATAGAACATGACAG CAAG CCATCATGTTCTATG-A TTACTCGTTATTTAA TERM 3087 3033310 - 3033277 - R 100 -14.1 -3.70836 | opp_overlap 3033276 3033277 3033279, overlap 3033275 3033273 AATAACAAAAACATA CATAGAACATGACAG CAAG CCATCATGTTCTATG ATTACTCGTTATTTA TERM 3088 3033277 - 3033310 + r 71 -9.7 -2.60492 | opp_overlap 3033277 3033275 3033273, overlap 3033276 3033279 AATAACAAAAACATA CATAGAACATGACAG CAAG CCATCATGTTCTATG ATTACTCGTTATTTA YpsIP31758_2678 3033799 - 3033323 - | putative antigen YpsIP31758_2679 3034832 - 3034344 - | hypothetical protein TERM 3089 3034442 - 3034470 + g 80 -4.5 -5.08831 | opp_overlap 3034441, overlap 3034444 3034454 TGACATCAATAAAGC CTCTGTCACCATT AAA AAAGGTGACAACG TTATTTTTTTTATTA YpsIP31758_2680 3035473 - 3034829 - | transcriptional regulator TERM 3090 3035042 - 3035021 - G 80 -6.7 -4.77036 | TCCTACCATGAAAAA TATGATGAT GATG ACCATCATA ATAGCGATAAAAAAG TERM 3091 3035612 - 3035635 + r 71 -8.4 -3.53224 | opp_overlap 3035610 3035621, overlap 3035610 GCACAAGATTAAGTC TTATTAAGAT TATT ATCTTAATAA TTTAACAAAAAAATA TERM 3092 3035739 - 3035714 - R 100 -13.4 -5.30686 | opp_overlap 3035714 AACACCCATAAAAAA TGCCAGTCAG AATTAA CTGACTGGCA TTTCAGACTGCTGAC TERM 3093 3035714 - 3035739 + r 100 -13.4 -3.58343 | opp_overlap 3035714 AACACCCATAAAAAA TGCCAGTCAG AATTAA CTGACTGGCA TTTCAGACTGCTGAC fruA 3037498 - 3035798 - | fructose-specific PTS system IIBC component fruK 3038451 - 3037513 - | 1-phosphofructokinase TERM 3094 3038334 - 3038354 + g 77 -6.8 -4.59853 | CGTTGATCCCTTTAC CCGCCG CATGCAGAC CGGCGG TTTTTACCAGATTGA YpsIP31758_2683 3039581 - 3038448 - | bifunctional fructose-specific PTS IIA/HPr protein YpsIP31758_2685 3039603 - 3039734 + | hypothetical protein YpsIP31758_2684 3039844 - 3039731 - | hypothetical protein YpsIP31758_2686 3039843 - 3040298 + | hydrolase NUDIX family domain-containing protein YpsIP31758_2687 3041389 - 3040391 - | putative ribose ABC transporter, permease protein TERM 3095 3040598 - 3040567 - G 78 -5.8 -4.72272 | gap 1 CGTGCCCACCAAAAA CACTGACGCCGCCGA TAA TGGGC-GCGGCAATG GCGTAGAGCAAGTAG TERM 3096 3040678 - 3040664 - G 75 -3.5 -5.08601 | gap 1 CGATGCCAACAAAAA GCCAGC AAGT GC-GGC AAGGAACCCTGAAAT YpsIP31758_2688 3042999 - 3041425 - | putative ribose ABC transporter, ATP-binding protein TERM 3097 3041932 - 3041945 + g 73 -8.1 -4.07687 | opp_overlap 3041932 AATGCCAATATTGAA GGCCA TGCG TGGCC TTTTCGGCAGAGCCT YpsIP31758_2689 3044196 - 3043108 - | putative ribose ABC transporter, periplasmic ribose-binding protein rpiA1 3045022 - 3044312 - | ribose 5-phosphate isomerase A TERM 3098 3044983 - 3044994 + g 73 -7.2 -4.18697 | opp_overlap 3044977 CCTGAATCACCCGAC GGGC GGCA GCCC TTTTGGCGTCATTTT YpsIP31758_2691 3046595 - 3045042 - | carbohydrate kinase TERM 3099 3045142 - 3045128 - G 70 -10 -3.14132 | overlap 3045131 3045132 GTTGGGCCTCAGCAA CAACCG CCG CGGTTG CGGGATTGGGGGGTT TERM 3100 3046070 - 3046055 - G 71 -6.8 -4.24204 | gap 1, overlap 3046056 CACGTACATCGAAAA GCC-CGG TCC CCGAGGC ATCCGAAACTTCAGT YpsIP31758_2692 3048095 - 3046599 - | putative succinate-semialdehyde dehydrogenase (NADP+) TERM 3101 3047903 - 3047893 - G 77 -8.2 -4.2828 | overlap 3047894 GCCCAGGCAGGAAAA GCGC GAC GCGC CGCAGCAACCGCCTC YpsIP31758_2693 3048459 - 3049601 + | hypothetical protein TERM 3102 3050523 - 3050555 + G 72 -11.1 -2.52464 | opp_overlap 3050515 CTGAAGAGGCCCTAC GGGGACTGCGCGGTG AGC CACTGCGCTGCCCAC TGACTTAAGGAGAAG YpsIP31758_2694 3049613 - 3050563 + | D-isomer specific 2-hydroxyacid dehydrogenase family protein TERM 3103 3050747 - 3050769 + G 72 -11.3 -2.62613 | overlap 3050746 3050744 AGGGCTGGCGGCAAC CGGTGCGGA AGTGA TCTGCACCG ATATTTCACGTGAAC YpsIP31758_2695 3050574 - 3051407 + | oxidoreductase, short chain dehydrogenase/reductase family protein YpsIP31758_2696 3051730 - 3051476 - | hypothetical protein TERM 3104 3052128 - 3052109 - H 76 -7.8 -4.22375 | opp_overlap 3052113 ACTTAATATAAAGAA GTTACCCG CAGC CGGGTATC TCAGGAGCAATAAAT TERM 3105 3052249 - 3052307 + G 82 -12.5 -3.19602 | gap 1, overlap 3052251 CTCAATCCCAATCGT GACA-GCCGGGGTATGGTTCAGCGGCTC AGTG GGGCTGCTGATCTATACCTGGGCATGTA TGTTAGTGTCCGGGC TERM 3106 3052251 - 3052305 + G 100 -15.1 -3.16071 | gap 1, overlap 3052249 CAATCCCAATCGTGA CA-GCCGGGGTATGGTTCAGCGGCTC AGTG GGGCTGCTGATCTATACCTGGGCATG TATGTTAGTGTCCGG mtr 3052142 - 3053386 + | tryptophan-specific transport protein YpsIP31758_2698 3053490 - 3054062 + | elongation factor P TERM 3107 3054148 - 3054178 + T 100 -14 -3.69482 | opp_overlap 3054157, overlap 3054149 TTGGGTCTCTCTTCT ACGTTAAGAGCCGG AAA CCGGCCCTTAACGG TTATCTCTTCACTGA TERM 3108 3054149 - 3054177 + T 100 -17.5 -2.81207 | opp_overlap 3054157, overlap 3054148 TGGGTCTCTCTTCTA CGTTAAGAGCCGG AAA CCGGCCCTTAACG GTTATCTCTTCACTG TERM 3109 3054169 - 3054157 - T 76 -10.5 -3.05844 | opp_overlap 3054149 3054148 TCTTCTACGTTAAGA GCCGG AAA CCGGC CCTTAACGGTTATCT uxuA 3055397 - 3054204 - | mannonate dehydratase TERM 3110 3054457 - 3054469 + gT 91 -7.7 -4.83759 | CCTTGCAAATGCCCC CCTTC ATG GAAGG TTTTTGGATTTCCTT YpsIP31758_2700 3055507 - 3055349 - | hypothetical protein TERM 3111 3055453 - 3055435 - GH 73 -3.2 -5.00467 | opp_overlap 3055447, overlap 3055427 GCAACAATAATAAAA TTAACC CGCTAAC GGTTAA AGCCGCCTTTTTCTG TERM 3112 3055735 - 3055747 + G 79 -3.4 -5.23292 | opp_overlap 3055735 CGAATATTATCAATA TTGG ACTTA CCAA TTTTATTTTCTGTCA YpsIP31758_2701 3055703 - 3055822 + | hypothetical protein TERM 3113 3056751 - 3056768 + G 71 -6.9 -4.2123 | GTCGCAGACTCTTGT GGGATCG CCTG CGAACCC TTTATTCAGTGGGTC YpsIP31758_2702 3056001 - 3057473 + | mannitol dehydrogenase family protein TERM 3114 3057482 - 3057516 + T 89 -11.6 -3.4314 | opp_overlap 3057480 3057483, overlap 3057480 3057483 GGCTTAAGACACACG ACGATGAGCTGAAT CAAGGCT ATTCAGCTCATCGG TATTGTTGGCGTTTA TERM 3115 3057515 - 3057483 - T 100 -15.1 -2.75975 | opp_overlap 3057482 3057480 3057483, overlap 3057480 GCTTAAGACACACGA CGATGAGCTGAAT CAAGGCT ATTCAGCTCATCG GTATTGTTGGCGTTT TERM 3116 3057483 - 3057515 + T 100 -15.1 -2.65161 | opp_overlap 3057483 3057480, overlap 3057482 3057480 GCTTAAGACACACGA CGATGAGCTGAAT CAAGGCT ATTCAGCTCATCG GTATTGTTGGCGTTT uxuR 3058375 - 3057632 - | uxu operon transcriptional regulator TERM 3117 3058518 - 3058490 - H 100 -15.5 -3.89524 | overlap 3058514 ACTTCAGGTGATAAA TCACGGTTTATCA CGT CGATAAACCGTGA TGCCCGAACATGTTG YpsIP31758_2704 3058746 - 3058859 + | hypothetical protein TERM 3118 3059714 - 3059695 - g 73 -4.9 -4.68705 | overlap 3059684 3059681 ACAATGGCAACAAAA GCAGCCA TTATCG CGGCCGC TGTATCATAGCGAAT YpsIP31758_2705 3059183 - 3060166 + | CobW/P47K family protein TERM 3119 3060157 - 3060176 + F 89 -3.5 -5.62288 | opp_overlap 3060146 3060157 AATTCGTTTACGTAA CGGGG TATGATGTCT CCCCG TTTTTATTTTCTTCC YpsIP31758_2706 3060225 - 3060926 + | PAP2 family protein TERM 3120 3061538 - 3061486 - g 76 -9.1 -3.82865 | opp_overlap 3061484 TAAATAATACGCAAA CTGAGATGCGTGCAGTTAATGACAA AGA TGGGCTTTTACTGCAAGCCTCTCAG GATGAATTCGAAGCG TERM 3121 3061756 - 3061746 - g 71 -6.8 -4.1552 | opp_overlap 3061746 GATCTCGGCAAGAAA GTCC AGC GGAC TAAATTACGTCCAGG YpsIP31758_2707 3061368 - 3061952 + | putative outer membrane lipoprotein YpsIP31758_2708 3062140 - 3061973 - | hypothetical protein TERM 3122 3061999 - 3062015 + gF 100 -8.7 -5.4833 | opp_overlap 3061999 AACCAAACGTTGAAA CGCTGTT TAT GACAGCG TTTTTTATTGGCTCA TERM 3123 3062015 - 3061999 - Gf 70 -8 -3.65084 | opp_overlap 3061999 AACCAAACGTTGAAA CGCTGT TTATG ACAGCG TTTTTTATTGGCTCA YpsIP31758_2709 3062132 - 3062254 + | hypothetical protein rtn 3062538 - 3064118 + | hypothetical protein TERM 3124 3064813 - 3064797 - g 72 -10.9 -2.7362 | overlap 3064796 TGGAAAGATCATAAG CTGAGTG ACC CACTCAG TACCCCTCCAGTCGC YpsIP31758_2711 3064200 - 3066008 + | ABC transporter, periplamic substrate-binding protein TERM 3125 3066514 - 3066495 - g 100 -10.7 -5.60993 | opp_overlap 3066494 CTGGGGATAAAAAAA GCGGTGC GCAATG GCACCGC CTTCGATACCTGGAG YpsIP31758_2712 3066018 - 3067118 + | ABC transporter, permease protein YpsIP31758_2713 3067118 - 3068146 + | ABC transporter, permease protein TERM 3126 3069081 - 3069061 - g 75 -6.1 -4.58663 | opp_overlap 3069080 ACTATGCGCTAAAAA GCCTCAGTT TTG ACCTGAAGC CCGGCGAAAGTCTGG YpsIP31758_2714 3068148 - 3069740 + | ABC transporter, ATP-binding protein TERM 3127 3069785 - 3069764 - T 82 -5.8 -4.9792 | TAGCCTAGACAAAAA TGCCCGCG ATAGCA CACGGACA AACAGCTAAAAAGTA YpsIP31758_2715 3070145 - 3069801 - | hypothetical protein TERM 3128 3070383 - 3070398 + r 95 -7.6 -5.00412 | CAGAAGCTGTAGATT TGGGAT TCAG ATCCCA TTTTTCGTTATATTT YpsIP31758_2716 3070717 - 3070559 - | hypothetical protein TERM 3129 3071118 - 3071072 - R 80 -11.6 -2.62792 | opp_overlap 3071107, overlap 3071071 3071069 3071074 ATCCATGTCAAATAC CATCCATGTCGGATAGCATCCA TAT CGAATACCATCCGGCATGGGCG CTGGCTATTTTTTAT TERM 3130 3071116 - 3071074 - R 75 -10.6 -2.85297 | opp_overlap 3071107, overlap 3071072 3071071 3071069 CCATGTCAAATACCA TCCATGTCGGATAGCATCCA TAT CGAATACCATCCGGCATGGG CGCTGGCTATTTTTT bcr 3072329 - 3071130 - | bicyclomycin/multidrug efflux system rsuA 3073140 - 3072433 - | 16S rRNA pseudouridylate synthase A TERM 3131 3073716 - 3073726 + G 71 -6.8 -4.17048 | CGAGAAGCGGTCGAT GCCA CGG TGGC TTATTTTCGACGCCA TERM 3132 3073984 - 3074003 + G 75 -5.8 -4.59027 | gap 1, overlap 3073987 CGGTGGCCCGTAATC TGCCGCTAT TTG ATAGCG-CA TTTTCTCTGCTGATT YpsIP31758_2719 3073674 - 3075431 + | putative helicase rplY 3075593 - 3075877 + | 50S ribosomal protein L25 TERM 3133 3075939 - 3075910 - T 100 -18.1 -3.57144 | opp_overlap 3075910 3075917, overlap 3075917 TTCGGGACGCCGAAA TAAAAAACGCCGC TGAT GCGGCGTTTTTTA TTGGCTAAATACGCA TERM 3134 3075910 - 3075939 + T 100 -18.1 -3.07816 | opp_overlap 3075910 3075917, overlap 3075917 TTCGGGACGCCGAAA TAAAAAACGCCGC TGAT GCGGCGTTTTTTA TTGGCTAAATACGCA TERM 3135 3075917 - 3075932 + T 100 -11.8 -5.4833 | opp_overlap 3075917 3075910, overlap 3075910 CGCCGAAATAAAAAA CGCCGC TGAT GCGGCG TTTTTTATTGGCTAA TERM 3136 3075932 - 3075917 - T 100 -11.8 -5.63517 | opp_overlap 3075910 3075917, overlap 3075910 CGCCGAAATAAAAAA CGCCGC TGAT GCGGCG TTTTTTATTGGCTAA YpsIP31758_2721 3076969 - 3075965 - | nucleoid-associated protein NdpA YpsIP31758_2722 3077147 - 3077374 + | hypothetical protein YpsIP31758_2723 3077402 - 3079198 + | sulfatase family protein TERM 3137 3079387 - 3079420 + F 100 -13.3 -3.91144 | opp_overlap 3079385 3079395, overlap 3079390 3079395 GCCGACCAAATACCT CAACAAAACCAATCC ATTC GGGTTGGTTTTGTCG TTTGTGGGGTGTGGC TERM 3138 3079390 - 3079417 + F 100 -13.6 -3.02186 | opp_overlap 3079385 3079395, overlap 3079387 3079395 GACCAAATACCTCAA CAAAACCAATCC ATTC GGGTTGGTTTTG TCGTTTGTGGGGTGT TERM 3139 3079395 - 3079412 + F 86 -7.7 -4.64846 | opp_overlap 3079385 3079395, overlap 3079390 3079387 AATACCTCAACAAAA CCAATCC ATTC GGGTTGG TTTTGTCGTTTGTGG TERM 3140 3079412 - 3079395 - f 73 -5.5 -4.6759 | opp_overlap 3079395 3079390 3079387, overlap 3079385 AATACCTCAACAAAA CCAATCC ATTC GGGTTGG TTTTGTCGTTTGTGG YpsIP31758_2724 3079429 - 3079812 + | hypothetical protein TERM 3141 3079914 - 3079951 + F 87 -8.6 -4.5464 | overlap 3079915 TCACATGCGAGGTTT TTATGTTGGTTCAGTT AGTTCA ATCTGAACCAACATAC TTTTGCTTATATATA TERM 3142 3079915 - 3079950 + F 89 -12.1 -3.317 | overlap 3079914 CACATGCGAGGTTTT TATGTTGGTTCAGTT AGTTCA ATCTGAACCAACATA CTTTTGCTTATATAT YpsIP31758_2725 3080169 - 3081317 + | HNH endonuclease domain-containing protein YpsIP31758_2726 3081330 - 3081818 + | hypothetical protein YpsIP31758_2727 3081818 - 3081931 + | hypothetical protein TERM 3143 3082756 - 3082771 + G 72 -6.2 -4.34402 | opp_overlap 3082755 TTAAATTAAAAACTG GGATAA TAGG TTATCC TTTTGATATGAAAGA YpsIP31758_2728 3082518 - 3082880 + | hypothetical protein TERM 3144 3082960 - 3082939 - T 100 -8.7 -4.8143 | opp_overlap 3082938 GTAACAAGGTAAAAA CCGCTCACC ATAG AGTGAACGG CCTTCTTGAATTCAA YpsIP31758_2729 3084442 - 3083006 - | 6-phospho-beta-glucosidase BglA TERM 3145 3083083 - 3083096 + g 77 -4.5 -4.84359 | AACGCGCCATTGTAC CGGTG CCAT CATCG TTTTTATCGACATAA YpsIP31758_2730 3085473 - 3084733 - | RpiR family transcriptional regulator TERM 3146 3085654 - 3085678 + r 75 -7.2 -4.33621 | gap 1, opp_overlap 3085657, overlap 3085655 3085657 TTCTTTGTAGATAGC TA-ACCGGGCG TAAT TGCCCGGTATA TTTATTAATTCACTG TERM 3147 3085655 - 3085676 + r 72 -7.9 -3.7642 | opp_overlap 3085657, overlap 3085654 3085657 TCTTTGTAGATAGCT AACCGGGCG TAAT TGCCCGGTA TATTTATTAATTCAC TERM 3148 3085674 - 3085657 - R 74 -9.8 -3.15999 | opp_overlap 3085655 3085654 3085657 TTTGTAGATAGCTAA CCGGGC GTAATT GCCCGG TATATTTATTAATTC TERM 3149 3085657 - 3085674 + r 80 -10.5 -3.45532 | opp_overlap 3085657, overlap 3085655 3085654 TTTGTAGATAGCTAA CCGGGCG TAAT TGCCCGG TATATTTATTAATTC YpsIP31758_2731 3086550 - 3085771 - | tail collar domain-containing protein TERM 3150 3086478 - 3086506 + g 70 -9.5 -3.25942 | opp_overlap 3086460 3086501, overlap 3086477 TGGGTGGAACGCCAC CGGCGACATTGCC GTC GGTAAATTCGCCG TTACTGTCGGCGCGT YpsIP31758_2732 3087249 - 3086647 - | hypothetical protein YpsIP31758_2733 3088382 - 3087246 - | baseplate J-like protein YpsIP31758_2734 3088841 - 3088386 - | phage protein GP46 TERM 3151 3088466 - 3088495 + g 88 -14.3 -2.62184 | opp_overlap 3088469, overlap 3088471 3088481 TGGGTTGTTGGTAAC TCACCCCCAGCAC CAGG GTGTTGGGGGCGA TAATGTGCGCACGGA TERM 3152 3088492 - 3088469 - G 78 -12.4 -2.52464 | opp_overlap 3088466 3088471 3088481 GTTGTTGGTAACTCA CCCCCAGCAC CAGG GTGTTGGGGG CGATAATGTGCGCAC YpsIP31758_2735 3089434 - 3088838 - | phage baseplate assembly protein TERM 3153 3089369 - 3089358 - G 71 -7.2 -4.07568 | overlap 3089359 TTGCTGTCGTCAAAA GCGG TCAC CCGC CCGATCCCCAGCAGC YpsIP31758_2736 3090505 - 3089450 - | bacteriophage Mu P protein YpsIP31758_2737 3091908 - 3090502 - | putative DNA circulation protein TERM 3154 3091963 - 3091950 - R 100 -9.5 -5.4387 | ACAGAAAGTAAAAAA CCCGC CGGA GCGGG TTCGAGGTTGATGAC TERM 3155 3092058 - 3092084 + r 73 -10.1 -2.97771 | gap 1, overlap 3092057 CCTTCCCTGGGGGCT CGAACCGCGCCA TCCC TGGCGCGGA-CG CTTTGATCTTCTGCC YpsIP31758_2738 3093683 - 3092190 - | hypothetical protein YpsIP31758_2739 3094103 - 3093804 - | hypothetical protein TERM 3156 3094020 - 3094038 + g 91 -13.2 -3.38316 | AGGTTCGCTGAGTTC GACCACCT CAT AGGTGGTC TTGCTTGCGTCGTGA YpsIP31758_2740 3094473 - 3094105 - | hypothetical protein TERM 3157 3094446 - 3094456 + g 71 -8.2 -3.64103 | TGACATACGCCGTAC CCGC CAG GCGG TTTGAAGTATCGCTC YpsIP31758_2741 3096003 - 3094495 - | bacteriophage Mu tail sheath protein (GpL) TERM 3158 3095672 - 3095658 - G 73 -7.8 -4.06633 | TATAAAGTGAAATAA CACCGG TCT CCGATG CCGCCGTATTGATGG YpsIP31758_2742 3096194 - 3096000 - | hypothetical protein YpsIP31758_2743 3096816 - 3096199 - | hypothetical protein YpsIP31758_2744 3097152 - 3096862 - | hypothetical protein TERM 3159 3097257 - 3097241 - R 91 -3.5 -5.85737 | opp_overlap 3097241 3097240 3097248 ACAGCAATAAAAAAA CCCCGTC GAT GCTGGGG CTTCTTATTGTTTAC TERM 3160 3097381 - 3097355 - R 100 -8.1 -5.30189 | gap 1, overlap 3097359 TATAAGATGAAAAAA GACA-GCCACAC CGAA GTGTGGCCTATC ACAGTTAGCTATACA TERM 3161 3097376 - 3097359 - R 90 -11.3 -3.7035 | overlap 3097355 AGATGAAAAAAGACA GCCACAC CGAA GTGTGGC CTATCACAGTTAGCT YpsIP31758_2745 3098204 - 3097410 - | AP endonuclease YpsIP31758_2746 3098989 - 3098180 - | DeoR family transcriptional regulator YpsIP31758_2747 3099690 - 3098995 - | putative aldolase YpsIP31758_2748 3101027 - 3099723 - | hypothetical protein TERM 3162 3101150 - 3101162 + r 74 -4.9 -4.8743 | opp_overlap 3101144, overlap 3101155 TCAATTTAACTTAAT GTTAT TAA ATAAC TTTATTTATTTTAGA YpsIP31758_2749 3101717 - 3101238 - | phage antitermination protein Q YpsIP31758_2750 3101991 - 3102713 + | phage repressor protein YpsIP31758_2751 3102919 - 3103161 + | dinI family protein YpsIP31758_2753 3104683 - 3106470 + | methyl-accepting chemotaxis protein YpsIP31758_2754 3107572 - 3106544 - | metallo-beta-lactamase family protein TERM 3163 3107792 - 3107805 + H 77 -3.9 -5.16841 | opp_overlap 3107796, overlap 3107793 3107796 GCGTCTTCCTCTCAA TTGAT GTAT ATCAA TTTTTATTGATATAC TERM 3164 3107821 - 3107796 - H 76 -10.7 -2.52464 | opp_overlap 3107792 3107796 3107793 CTTCCTCTCAATTGA TGTATATCAAT TTTT ATTGATATACA TGGCTTTCTACGTCG TERM 3165 3107796 - 3107821 + H 76 -10.7 -2.71325 | opp_overlap 3107796, overlap 3107792 3107793 CTTCCTCTCAATTGA TGTATATCAAT TTTT ATTGATATACA TGGCTTTCTACGTCG TERM 3166 3109338 - 3109328 - g 80 -6.8 -4.7373 | overlap 3109329 TGAGCGTATTAAAAA TGGC GGT GCCA TGGCAGATATCCCCG YpsIP31758_2756 3107949 - 3109475 + | putative transport protein YpsIP31758_2755 3109671 - 3109462 - | hypothetical protein TERM 3167 3109494 - 3109528 + g 84 -13.6 -2.65388 | opp_overlap 3109480 3109500, overlap 3109500 ATTTCTGGTCGTGAC CACAAACCGCACCGGT CCC GCCAGTGCGGTTTTTG CTTCTCCCTTCCCTG TERM 3168 3109522 - 3109500 - G 93 -12.7 -3.96148 | opp_overlap 3109500 3109494 GGTCGTGACCACAAA CCGCACCGG TCCCG CCAGTGCGG TTTTTGCTTCTCCCT TERM 3169 3109500 - 3109522 + g 100 -11.2 -4.93968 | opp_overlap 3109500, overlap 3109494 GGTCGTGACCACAAA CCGCACCGGT CCC GCCAGTGCGG TTTTTGCTTCTCCCT TERM 3170 3110161 - 3110122 - g 79 -2.3 -5.41143 | gap 3, opp_overlap 3110134, overlap 3110124 3110134 GACCCGTTAAAAAAA TATGCACCG-AA-AGGGGTC AAC GTCCCCTCTTACAGTGC-TA AGCAACCTATTAGGC TERM 3171 3110258 - 3110240 - g 71 -3.1 -5.00616 | gap 1 GCGGCCCGCAAAAAA GACC-GGT GTTT ACCTGGCC GACCAAAGATAATCG TERM 3172 3110774 - 3110762 - g 80 -4.7 -5.1101 | opp_overlap 3110762 3110762 GCATTATGCAAAAAA CCGGC GGT GGCGG TGGATTTATTACTTA YpsIP31758_2758 3109750 - 3110916 + | beta-lactamase/D-alanine carboxypeptidase YpsIP31758_2757 3111023 - 3110910 - | hypothetical protein TERM 3173 3111019 - 3111007 - G 73 -10.5 -3.22858 | overlap 3110999 3111005 GTAATGAGAGCAATA GCCCG CAC CGGGC ACATGCTGGATAAGC TERM 3174 3111071 - 3111095 + r 100 -13 -4.90266 | opp_overlap 3111071 AGAGAAAAGCAAAAA CCCGTTATCT TATTC AGATAACGGG TTTTTAATTGGTGCC TERM 3175 3111095 - 3111071 - R 100 -13 -5.15526 | opp_overlap 3111071 AGAGAAAAGCAAAAA CCCGTTATCT TATTC AGATAACGGG TTTTTAATTGGTGCC YpsIP31758_2759 3112004 - 3111543 - | hypothetical protein TERM 3176 3111994 - 3111984 - G 71 -6.8 -4.13945 | opp_overlap 3111983 ACTTTCATGTGAAAA CGGT GGC ACCG GTAACTTCATGGATA TERM 3177 3112066 - 3112013 - H 87 -8.6 -4.42653 | opp_overlap 3112029 3112065, overlap 3112014 3112015 3112036 3112040 ACTTCATGGATAAAA TCCTC-AGTATTTATTTGAGTAGACA GATC TGTCTACTCAAATAAAT-CTAGCCGA TGTAGACAGATTTGT TERM 3178 3112063 - 3112014 - H 76 -9.8 -3.2511 | gap 2, opp_overlap 3112029, overlap 3112013 3112015 3112036 3112040 CTTCATGGATAAAAT CCTCAGTATTTATTTGAGTAGACA GATC TGTCTACTCAAATAAAT-CT-AGC CGATGTAGACAGATT TERM 3179 3112062 - 3112015 - H 91 -13.3 -2.54745 | gap 2, opp_overlap 3112029, overlap 3112014 3112013 3112036 3112040 TTCATGGATAAAATC CTCAGTATTTATTTGAGTAGACA GATC TGTCTACTCAAATAAAT-CT-AG CCGATGTAGACAGAT TERM 3180 3112029 - 3112087 + H 73 -9.1 -3.55592 | gap 1, opp_overlap 3112015 3112014 3112013 3112036 3112040, overlap 3112065 3112067 CCTCAGTATTTATTT GAGTAGACAGATCTGTCTAC-TCAAATA AATC TAGCCGATGTAGACAGATTTGTCTACAC TCTTTGTGCACTTCT YpsIP31758_2760 3112149 - 3112760 + | TetR family transcriptional regulator TERM 3181 3112769 - 3112744 - T 100 -15.5 -3.84674 | opp_overlap 3112748, overlap 3112748 AGTGGATCACAATAA GAAACGCGGCC GAAT GACCGCGTTTC TCTCAGGACTCACGC TERM 3182 3112765 - 3112748 - T 100 -10.5 -4.53419 | opp_overlap 3112748, overlap 3112744 GATCACAATAAGAAA CGCGGCC GAAT GACCGCG TTTCTCTCAGGACTC TERM 3183 3112748 - 3112765 + T 77 -8.3 -4.0371 | opp_overlap 3112748 3112744 GATCACAATAAGAAA CGCGGCC GAAT GACCGCG TTTCTCTCAGGACTC YpsIP31758_2761 3113912 - 3112797 - | outer membrane porin protein C TERM 3184 3114296 - 3114310 + H 100 -11.4 -5.626 | TCGTTAATGTTACGA CCGGTC TCT GACCGG TTTTTTTCTCCGGTC YpsIP31758_2762 3115016 - 3116170 + | major facilitator transporter TERM 3185 3116967 - 3116955 - g 71 -10.5 -2.75183 | overlap 3116952 AGTGCCACTCAATGA GGGGG CTA CCCCC GAAGATATTGCGGCA TERM 3186 3117364 - 3117350 - g 80 -4.2 -5.31456 | overlap 3117351 TGAATCTACAAAAAA TTGCCA CTA TGGCAG AGCAGCACCACGGTG TERM 3187 3118608 - 3118596 - g 75 -7.7 -4.14193 | AGAAGATGATATAAA CCTCT ATG AGAGG CAACTAAAAACCAGT TERM 3188 3118835 - 3118847 + G 74 -2.7 -5.14563 | opp_overlap 3118832 AGATCGAAAATAGCA TCAGT CAG ATTGA TTTTTTCATCACCAG YpsIP31758_2763 3116269 - 3118887 + | phosphotransfer intermediate protein in two-component regulatory system with RcsBC rcsB 3118890 - 3119543 + | transcriptional regulator RcsB TERM 3189 3119567 - 3119593 + T 100 -15.2 -3.83844 | CCGCTCGACTCTCAA GCCCAGTTTTGC TCT GCAATACTGGGC TTATTAATTAATGAA rcsC 3122460 - 3119611 - | hybrid sensory kinase in two-component regulatory system with RcsB and YojN TERM 3190 3121769 - 3121757 - G 75 -3.3 -5.09762 | overlap 3121759 CGGGAAGAAATAAAA TCCTC CAA GCGGA CACTCTGCTCAAAGC TERM 3191 3122184 - 3122209 + g 81 -6.1 -4.96848 | opp_overlap 3122181, overlap 3122181 3122186 TATTCATAACCATGC CACTAGTGGCA TCTG TGTCACTGGCG TTTTTATCTAGCCGA TERM 3192 3122313 - 3122325 + g 95 -3.3 -5.95166 | TGTTGTTATATTCCT GACGA ATA TCGGC TTTTTTTTCGTTAAG TERM 3193 3122536 - 3122585 + r 81 -5.2 -5.14563 | opp_overlap 3122538, overlap 3122538 CGATAACCGATAAAA AAGCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGCTG TTTTTTAATGACACG TERM 3194 3122583 - 3122538 - R 100 -7.8 -5.3236 | opp_overlap 3122538 3122536 ATAACCGATAAAAAA GCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGC TGTTTTTTAATGACA TERM 3195 3122538 - 3122583 + r 76 -7.8 -4.20707 | opp_overlap 3122538, overlap 3122536 ATAACCGATAAAAAA GCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGC TGTTTTTTAATGACA YpsIP31758_2766 3122669 - 3122544 - | hypothetical protein TERM 3196 3122658 - 3122635 - G 74 -11 -2.81547 | overlap 3122632 GCCGCAGATGAATGA GCAGGTGCAA TAAA CCGCACCTGC CAGAGCAACATTATT gyrA 3125365 - 3122672 - | DNA gyrase subunit A TERM 3197 3124739 - 3124760 + g 72 -5.9 -4.48263 | overlap 3124757 GCCAGGGATATACTC CATCAGC CCTTCAAT GCTGATG TTTTCATCTTCTATA ubiG 3125665 - 3126393 + | 3-demethylubiquinone-9 3-methyltransferase TERM 3198 3126415 - 3126436 + F 81 -10.9 -3.27786 | gap 1, opp_overlap 3126407 3126411 3126408, overlap 3126407 CGTAGAACCCACTGG GAGCAGG-GC TAA GCACCTGCTC TTCCTGGCTTTTCCC TERM 3199 3127778 - 3127795 + G 73 -8.4 -3.7941 | TCACAGGGCGGTGTT CGTGGC GGCGCG GCCACG TTGTTCTACCCAATG TERM 3200 3128583 - 3128602 + G 74 -10.8 -3.03007 | overlap 3128563 AACAAGGCGCTTGCC CGTGGTTT AACG AAACCACG TATTCACAAGGTATT nrdA 3126887 - 3129175 + | ribonucleotide-diphosphate reductase subunit alpha YpsIP31758_2770 3129337 - 3130467 + | ribonucleotide-diphosphate reductase subunit beta YpsIP31758_2771 3130471 - 3130728 + | 2Fe-2S ferredoxin YfaE eco 3130763 - 3131272 + | ecotin precursor TERM 3201 3131304 - 3131283 - T 95 -13 -3.20207 | opp_overlap 3131278 AATAGCACTCATTAA CCAGGCGC TATTCC GCGCCTGG GCTAAATATTAACAT YpsIP31758_2773 3132523 - 3131330 - | competence damage-inducible protein A tyrP 3133142 - 3134350 + | tyrosine-specific transport protein TERM 3202 3134395 - 3134368 - T 100 -15 -4.0342 | gap 1, opp_overlap 3134368 CGTAAGCAATAATAA GGGCGCATATCCT GAT AGGA-ATGCGCCC TTTTCCGTCAGCCCA TERM 3203 3134368 - 3134395 + T 100 -15 -4.18018 | gap 1, opp_overlap 3134368 CGTAAGCAATAATAA GGGCGCATATCCT GAT AGGA-ATGCGCCC TTTTCCGTCAGCCCA YpsIP31758_2775 3135149 - 3134607 - | putative outer membrane protein TERM 3204 3135768 - 3135753 - g 87 -5.4 -5.42862 | opp_overlap 3135753 AGATCGGTAAAAAAA CAGACA TGTT TGTCCG CTTCTCCACTGTGGC TERM 3205 3136808 - 3136828 + G 73 -9.7 -3.31501 | opp_overlap 3136793, overlap 3136809 GAACATCAACGCATG TTCACCCGT ATT GCGGGTGAG TTATCGCAAGTTCCT TERM 3206 3136809 - 3136827 + G 72 -11 -2.58579 | opp_overlap 3136793, overlap 3136808 AACATCAACGCATGT TCACCCGT ATT GCGGGTGA GTTATCGCAAGTTCC katA 3135494 - 3136933 + | catalase TERM 3207 3136955 - 3136997 + T 84 -6.5 -4.93318 | gap 1, overlap 3136957 TCAGCCCCTTTGAAC TGCACC-CCAAATGTTGG ATAACCCC CTGACATTTGGAGGTGTA TTTTTATGGCTTATC TERM 3208 3136957 - 3136995 + T 71 -6.9 -4.07789 | gap 1, overlap 3136955 AGCCCCTTTGAACTG CACC-CCAAATGTTGG ATAACCCC CTGACATTTGGAGGTG TATTTTTATGGCTTA dinG 3139181 - 3137001 - | ATP-dependent DNA helicase DinG TERM 3209 3138290 - 3138300 + g 73 -2.4 -5.02476 | GTTCAGGATGGGCGA GCCC AGG GGGA TTTTTTGGCCGGTAT TERM 3210 3139281 - 3139269 - H 74 -7.7 -4.07568 | overlap 3139248 3139271 TCGCTCGCGCTAAAA CACCA GCT TGGTG TTAACCAAAGCAGGA TERM 3211 3140317 - 3140304 - g 73 -5.3 -4.63218 | opp_overlap 3140304 3140313, overlap 3140313 GTTTTTCTAATAAAA CTCAA AACA TTGAG TTAGTGGCTCAATAT YpsIP31758_2778 3139451 - 3140566 + | outer membrane protein N TERM 3212 3140630 - 3140647 + F 100 -12.7 -5.0133 | GAATGTATTTATTAT GCCGGGA TTAT TCCCGGC TTTTTTACGCCACTC YpsIP31758_2779 3140978 - 3141868 + | hypothetical protein YpsIP31758_2780 3141993 - 3142211 + | hypothetical protein adiA 3144635 - 3142329 - | biodegradative arginine decarboxylase TERM 3213 3142465 - 3142442 - G 74 -11.1 -2.81207 | overlap 3142441 TACTTAAGATATAAC GTAGCCATG GTTCTT CATGGCTAC CAAAACTCTCCCCCG adiC 3146039 - 3144705 - | arginine:agmatin antiporter TERM 3214 3145008 - 3144992 - G 76 -10.9 -3.13376 | overlap 3144990 3144989 3144985 3145000 AAACGGAAGAAACCA GGCCAAA CTC TTTGGCC GCATTCGGCGAAATA YpsIP31758_2783 3147329 - 3146493 - | quaternary amine ABC transporter permease YpsIP31758_2784 3148264 - 3147326 - | quaternary amine ABC transporter ATP-binding protein YpsIP31758_2785 3149415 - 3148261 - | quaternary amine ABC transporter permease TERM 3215 3149669 - 3149679 + r 71 -4 -4.7497 | GACTGGCTCCCCCAG CTAA TGG TTAG TTTTTAATAAATCCG YpsIP31758_2786 3150608 - 3149676 - | quaternary amine ABC transporter substrate-binding protein TERM 3216 3150411 - 3150422 + g 72 -5.8 -4.31737 | TACGACTTTGGTTGC TCCC AGTT GGGA TTTATTGGTGGTTTT sseA 3151344 - 3152198 + | 3-mercaptopyruvate sulfurtransferase TERM 3217 3152224 - 3152206 - T 72 -8.1 -3.83026 | TGGCGTGATACCAAA GGCTGGC TCACC ACCAGCC ACTGACATGACTCAT YpsIP31758_2788 3153747 - 3152332 - | aromatic amino acid decarboxylase TERM 3218 3152585 - 3152596 + g 73 -2.2 -5.10877 | GGTGCGACCAGTTTC CAGT CATC GCTG TTTTTAATTTGTTCT YpsIP31758_2789 3154628 - 3153771 - | hypothetical protein TERM 3219 3154190 - 3154180 - G 71 -6.8 -4.17048 | opp_overlap 3154181 3154185, overlap 3154181 3154183 TTCCCTTCAAAAGAA GCAG TCA CTGC GCCCTCTGGCCAGTG TERM 3220 3154181 - 3154208 + g 71 -7.1 -4.0828 | gap 2, opp_overlap 3154180 3154181 3154183, overlap 3154185 TCCCTTCAAAAGAAG CAGTCACTGCGCC CTCT GGC-CAGTG-CTG TTTAATATTTTCGAT TERM 3221 3154693 - 3154714 + r 72 -7.4 -4.06419 | opp_overlap 3154695 ATAATTCTGCTAAGG GACAACAT GATGAG ATGTTGTC TTATTTATGAGAAGC YpsIP31758_2790 3155441 - 3154743 - | hydrophobic amino acid ABC transporter ATP-binding protein TERM 3222 3154880 - 3154866 - G 100 -10 -4.67635 | GGCAAAATCATAAAA CTGCTC CAC GAGCAG GATAGCCATATCCCC TERM 3223 3155058 - 3155044 - G 70 -7.8 -3.90318 | opp_overlap 3155044 3155055 3155057 TGACCACCGGATAAA TCGCCA CCA CGGCGA TGCTTCATCTCTTGT YpsIP31758_2791 3156371 - 3155535 - | hydrophobic amino acid ABC transporter ATP-binding protein TERM 3224 3155942 - 3155952 + g 89 -3.2 -5.61596 | ACAAGCTGGCCCACA CCGT TTT ATGG TTTTTTTGTGCCAGT YpsIP31758_2792 3157444 - 3156368 - | hydrophobic amino acid ABC transporter permease TERM 3225 3156472 - 3156455 - G 81 -3.3 -5.46657 | overlap 3156456 CAGGCCAAGAAAAAA TTGCCAG TATT CCGGCAT CGCCATGGTGAACCA YpsIP31758_2793 3158991 - 3157444 - | hydrophobic amino acid ABC transporter permease TERM 3226 3159109 - 3159078 - R 100 -10.9 -4.57837 | overlap 3159080 ATATGTGGTGAAAAA GAGCTGACGTCAG ATCCCG CTGACATCAGCAC GTCACAGCGATTACC TERM 3227 3159107 - 3159080 - R 100 -12.1 -3.90316 | overlap 3159078 ATGTGGTGAAAAAGA GCTGACGTCAG ATCCCG CTGACATCAGC ACGTCACAGCGATTA urtA 3160437 - 3159169 - | urea ABC transporter, urea binding protein TERM 3228 3160741 - 3160717 - R 72 -6.4 -4.31085 | TATATTAATCTAAAA CAGGCATGGC GGATT ACCACACCTG TTCTTTACTAACAGC YpsIP31758_2795 3161379 - 3160906 - | hypothetical protein TERM 3229 3161091 - 3161103 + g 75 -3.3 -5.00884 | overlap 3161092 TGTCTTTCAATTCGA ATGCG ACA CGCAG TTTTTTCAACACAAT TERM 3230 3161456 - 3161441 - R 74 -4 -4.94243 | gap 1, overlap 3161436 3161444 GCAAAAAAACTAAAA GAGCGTC TTT GACG-TC TAGCGGGCAGTATTG YpsIP31758_2796 3162505 - 3161624 - | phosphonate ABC transporter, permease protein TERM 3231 3162430 - 3162452 + g 74 -4 -5.00196 | ATCTGATATAACGTT TCTGCTGCCT GAA AAGCTGCGGA TTTTGTTGTTTCAGC phnE 3163368 - 3162508 - | phosphonate ABC transporter, permease protein TERM 3232 3163432 - 3163406 - R 75 -5.9 -4.70659 | gap 1, opp_overlap 3163409, overlap 3163409 3163411 TGTTACACCTAAAAA CAATAGCTCCGG CGAA CCAGAGCCA-TG TTGTTTTATCCGTTG TERM 3233 3163430 - 3163409 - R 93 -8.7 -4.46215 | opp_overlap 3163409, overlap 3163406 3163411 TACACCTAAAAACAA TAGCTCCGG CGAA CCAGAGCCA TGTTGTTTTATCCGT TERM 3234 3163428 - 3163411 - R 78 -9.1 -3.82353 | opp_overlap 3163409, overlap 3163409 3163406 CACCTAAAAACAATA GCTCCGG CGAA CCAGAGC CATGTTGTTTTATCC phnD 3164384 - 3163455 - | phosphonate ABC transporter, periplasmic phosphonate-binding protein phnC 3165257 - 3164421 - | phosphonate ABC transporter, ATP-binding protein TERM 3235 3164624 - 3164634 + g 73 -5.4 -4.62069 | opp_overlap 3164624, overlap 3164613 3164608 3164626 GTAACGTATTCATAA TACG TGT CGTA TTTTTAGGGTCCAAC TERM 3236 3165329 - 3165368 + r 80 -8.7 -3.96298 | opp_overlap 3165340, overlap 3165334 3165340 TATTGATGATAGTTG CATGTGAAAAAGGTGAC AAAATA GCCACCTTTTTCGTGTG TTTAATTAATGACTG TERM 3237 3165357 - 3165340 - R 71 -4.8 -4.62069 | opp_overlap 3165340 3165334 3165329 GTTGCATGTGAAAAA GGTGAC AAAATA GCCACC TTTTTCGTGTGTTTA YpsIP31758_2800 3165713 - 3165465 - | hypothetical protein YpsIP31758_2801 3167001 - 3165898 - | hypothetical protein TERM 3238 3166933 - 3166920 - G 73 -2.3 -5.0707 | opp_overlap 3166921 3166927, overlap 3166921 AAATATAAAAATAAA CGACC CTCA GGTCT TGTTGCACGACTGCA YpsIP31758_2802 3167313 - 3167143 - | hypothetical protein TERM 3239 3167218 - 3167204 - G 77 -2.7 -5.34365 | opp_overlap 3167206 3167206 CGATAAGAAGAAAAA CGCGC TAATG GCGTG TTGGCGTTTGAGTAT YpsIP31758_2803 3167314 - 3167655 + | hypothetical protein YpsIP31758_2804 3168220 - 3167681 - | adenylate cyclase, class IV TERM 3240 3167758 - 3167768 + g 71 -6.8 -4.13995 | opp_overlap 3167757 TATTGGCAAAATCAC GGCA TTC TGCC TTTAATTTATCAAGC TERM 3241 3169341 - 3169369 + G 73 -3.2 -4.87626 | gap 1 CTTTAAACATTTACC TATCGCGGGTGAA TATC TGCACC-GTGATA TTTTTGATATTGCGG dld 3168430 - 3170142 + | D-lactate dehydrogenase TERM 3242 3170239 - 3170210 - T 100 -13 -3.7791 | opp_overlap 3170210 CAATTAGTCACTAAA GCGGAATTTGCC TCTGCT AGCAAATTCCGC TTCTCAGTCGCGATG TERM 3243 3170210 - 3170239 + T 95 -12.3 -3.35996 | opp_overlap 3170210 CAATTAGTCACTAAA GCGGAATTTGC CTCTGCTA GCAAATTCCGC TTCTCAGTCGCGATG pbpG 3171198 - 3170263 - | D-alanyl-D-alanine endopeptidase YpsIP31758_2807 3171538 - 3171717 + | hypothetical protein YpsIP31758_2808 3172729 - 3171791 - | tRNA-dihydrouridine synthase C TERM 3244 3173013 - 3172965 - R 88 -9.8 -4.07687 | gap 1, opp_overlap 3172971, overlap 3172967 AGTCGTGTGGTAAAA TA-CCCATGGGCAATGCCCATTT ATGA AAATGGACATTGCCAAAGAGATA GTCTAAATACGTATT TERM 3245 3173010 - 3172967 - R 100 -14 -3.63744 | opp_overlap 3172971, overlap 3172965 TCGTGTGGTAAAATA CCCATGGGCAATGCCCATTT ATGA AAATGGACATTGCCAAAGAG ATAGTCTAAATACGT TERM 3246 3172971 - 3172983 + r 78 -9.1 -3.87815 | opp_overlap 3172967 3172965 GTGGTAAAATACCCA TGGGC AAT GCCCA TTTATGAAAATGGAC TERM 3247 3173687 - 3173705 + r 71 -8.9 -3.39365 | opp_overlap 3173687, overlap 3173685 3173683 3173704 TTCACCGCGTTAACA TCACCAC TTACT GTGGTGA TATCTTTATCTACTA TERM 3248 3174298 - 3174281 - R 100 -9.1 -5.61596 | opp_overlap 3174281, overlap 3174260 ATTTTGATAAAAAAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA TERM 3249 3174281 - 3174298 + r 76 -6.9 -4.431 | opp_overlap 3174260 3174281 ATTTTGATAAAAAAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA YpsIP31758_2810 3175696 - 3174341 - | ATP-dependent RNA helicase RhlE YpsIP31758_2811 3176087 - 3176797 + | putative DNA-binding transcriptional regulator TERM 3250 3177730 - 3177717 - g 71 -4.5 -4.63184 | AATTCACGCCAAAAA CAGTG GAAA CACCG GATTTACGCACCGAC YpsIP31758_2812 3176849 - 3177835 + | hypothetical protein YpsIP31758_2813 3177849 - 3179591 + | ABC transporter, ATP-binding protein TERM 3251 3180518 - 3180537 + G 73 -5 -4.66609 | gap 1, opp_overlap 3180510, overlap 3180511 3180519 3180521 AATTTAACGCCGCGA TGATCGCGT TGA ACGCGG-CA TTTTTGCCTGCGGTA YpsIP31758_2814 3179596 - 3180771 + | ABC transporter, permease protein YpsIP31758_2815 3180784 - 3181890 + | ABC transporter, permease protein YpsIP31758_2816 3182255 - 3181929 - | hypothetical protein YpsIP31758_2817 3182493 - 3182266 - | hypothetical protein TERM 3252 3182574 - 3182584 + H 90 -4 -5.64274 | opp_overlap 3182574, overlap 3182562 TGTTATTGAGGAAAT CAAT ATG ATTG TTTTTTTATCCATGA YpsIP31758_2818 3182825 - 3183736 + | LysR family substrate binding transcriptional regulator YpsIP31758_2819 3184846 - 3183737 - | oxidoreductase, FAD/FMN-binding zraR 3186558 - 3185194 - | transcriptional regulatory protein ZraR TERM 3253 3185314 - 3185334 + g 74 -3.9 -4.88736 | AGCGTCTATTTCGAC CCGATCGAG AGA CTGGATAGG TTTTTCTGCATCCTC YpsIP31758_2821 3188359 - 3186545 - | sensory box histidine kinase TERM 3254 3187747 - 3187727 - G 77 -4 -5.12474 | opp_overlap 3187727 3187739 GAGAATAGACAAAAA GATAATCG TATTG CGAATATC TTTTGCTTGCATCGC TERM 3255 3188408 - 3188455 + H 100 -15.2 -4.76041 | gap 1, opp_overlap 3188418, overlap 3188410 TCAATGAATTGGTGG CGGGTAATTATTACCCACA-TCG CCG CTACTGTGGGTAATAATTACCMG TTTTTACTGAATGTA TERM 3256 3188410 - 3188453 + H 100 -16.4 -2.66218 | gap 1, opp_overlap 3188418, overlap 3188408 AATGAATTGGTGGCG GGTAATTATTACCCACA-TCG CCG CTACTGTGGGTAATAATTACC MGTTTTTACTGAATG YpsIP31758_2822 3188717 - 3189190 + | zinc resistance protein TERM 3257 3189231 - 3189199 - T 73 -5.6 -4.51238 | opp_overlap 3189201, overlap 3189200 3189201 CCGATAAAATAGAAA CTCCCCTGATTAAC ATTTG ATTAATCAGGGGTT ATCTGGAGAGTCTAT TERM 3258 3189230 - 3189200 - T 71 -9.1 -3.29658 | opp_overlap 3189201, overlap 3189199 3189201 CGATAAAATAGAAAC TCCCCTGATTAAC ATTTG ATTAATCAGGGGT TATCTGGAGAGTCTA TERM 3259 3189229 - 3189201 - T 86 -12.6 -2.5671 | opp_overlap 3189201, overlap 3189200 3189199 GATAAAATAGAAACT CCCCTGATTAAC ATTTG ATTAATCAGGGG TTATCTGGAGAGTCT TERM 3260 3189201 - 3189229 + T 91 -11.9 -3.49102 | opp_overlap 3189201 3189200 3189199 GATAAAATAGAAACT CCCCTGATTAA CATTTGA TTAATCAGGGG TTATCTGGAGAGTCT xapB 3190534 - 3189278 - | xanthosine transporter XapB TERM 3261 3189896 - 3189911 + g 77 -4.8 -4.9138 | opp_overlap 3189896 CATGGCAAACAGGAA GAAAAT AGCC ATTTTC TTTTGTTTAAATAAT xapA 3191536 - 3190673 - | purine nucleoside phosphorylase YpsIP31758_2825 3191849 - 3192730 + | integral membrane protein xapR 3193661 - 3192768 - | DNA-binding transcriptional activator XapR TERM 3262 3193130 - 3193142 + g 83 -6.9 -4.91511 | opp_overlap 3193124, overlap 3193126 CATTAGACACGGCGA CGGCG ACT CGCTG TTTTTCTACTCGCCT YpsIP31758_2827 3193719 - 3193838 + | hypothetical protein betT 3195950 - 3193902 - | choline transport protein BetT TERM 3263 3196493 - 3196477 - g 71 -4.4 -4.82901 | opp_overlap 3196491, overlap 3196491 TTTCCGTGACAAAAA TGGCCT GCTAG AAGCCA CAATGAGGTATCTGA betI 3196316 - 3196912 + | transcriptional regulator BetI TERM 3264 3197125 - 3197113 - g 75 -10.5 -3.3197 | ACAGGATGTTGATAA GGCGG TAG CCGCC GCCAAACAAGGTCAG betB 3196970 - 3198442 + | betaine aldehyde dehydrogenase betA 3198465 - 3200168 + | choline dehydrogenase TERM 3265 3200316 - 3200296 - T 100 -11.2 -5.77734 | opp_overlap 3200296 AAAGAAAAACAAAAA GGACACCA GATTT TGGTGTCC TTTACTATCTCAAAC TERM 3266 3200296 - 3200316 + T 100 -11.9 -3.88498 | opp_overlap 3200296 AAAGAAAAACAAAAA GGACACCAG ATT TTGGTGTCC TTTACTATCTCAAAC YpsIP31758_2832 3201089 - 3200379 - | hypothetical protein TERM 3267 3200889 - 3200876 - G 83 -3.8 -5.38549 | overlap 3200879 CGGAAATAACAAAAA CCAG ACCAAG CTGG GCAATAATCAAGCCA moaE 3201687 - 3201232 - | molybdopterin synthase large subunit moaD 3201932 - 3201687 - | molybdopterin synthase small subunit moaC 3202408 - 3201929 - | molybdenum cofactor biosynthesis protein C moaA 3203611 - 3202631 - | molybdenum cofactor biosynthesis protein A YpsIP31758_2837 3204143 - 3205066 + | hypothetical protein YpsIP31758_2838 3205442 - 3205197 - | hypothetical protein uvrB 3207768 - 3205753 - | excinuclease ABC subunit B TERM 3268 3207660 - 3207679 + g 73 -7.8 -4.08216 | overlap 3207643 3207641 3207661 CTGTTACGCCTAGCA GGGTCTGG TGTG CCAGACCA TTTTCCAGCCCCTCC TERM 3269 3207661 - 3207678 + g 74 -11.3 -3.04715 | overlap 3207643 3207641 3207660 TGTTACGCCTAGCAG GGTCTGG TGTG CCAGACC ATTTTCCAGCCCCTC TERM 3270 3209196 - 3209216 + G 100 -9 -4.6856 | gap 1, opp_overlap 3209195 3209194 CAGGCCGCCATAAGT CCCA-CCCG ATTC CGGGCTGGG TTTTTGAGCTATTTC YpsIP31758_2840 3208859 - 3209569 + | putative amino acid ABC transporter, ATP-binding protein bioD2 3210446 - 3209724 - | dithiobiotin synthetase TERM 3271 3210233 - 3210220 - G 78 -5.3 -5.00616 | opp_overlap 3210220 GTCGCTTCCAAAAAA GTGAA CGGA TTCAC TTGTGAGTAACCGAG bioC 3211242 - 3210439 - | biotin biosynthesis protein BioC TERM 3272 3210715 - 3210704 - G 74 -3 -5.09426 | TGTAATGGCAAAAAA TCAT TTAC ATGA CGCTGACCATCCACC TERM 3273 3211157 - 3211121 - G 71 -9.3 -3.53012 | opp_overlap 3211144 GTTTCTCGCTGTAAA TCAGCCGCGCTGTCG TAGCTCT CGGCGGCCCGGCTGA ATGCAGCCGCAATCG bioF 3212377 - 3211226 - | 8-amino-7-oxononanoate synthase bioB 3213414 - 3212377 - | biotin synthase TERM 3274 3214647 - 3214657 + G 74 -6.8 -4.36914 | GTTAATGTCGCCCGC CTGC AAC GCAG TTTTGTCGAACAGGG bioA 3213513 - 3214793 + | adenosylmethionine--8-amino-7-oxononanoate transaminase pgl 3215982 - 3214978 - | 6-phosphogluconolactonase YpsIP31758_2847 3216273 - 3217094 + | phosphotransferase modC 3218229 - 3217150 - | molybdate transporter ATP-binding protein TERM 3275 3218225 - 3218243 + g 93 -8.8 -5.01732 | overlap 3218226 CTGAAATTCAGTTCT AGCATGGG GCC CCCATGCG TTTTTTACCCCAATT TERM 3276 3218226 - 3218242 + g 86 -12.3 -3.60316 | overlap 3218225 TGAAATTCAGTTCTA GCATGGG GCC CCCATGC GTTTTTTACCCCAAT modB 3218918 - 3218223 - | molybdate ABC transporter permease protein TERM 3277 3218762 - 3218735 - G 73 -10.6 -3.19657 | overlap 3218730 3218728 3218738 ACAAGAGATAGCCAA TCACCACCGGTG GCAA CACCAGTGGCAA ATGAATCACACTGTC TERM 3278 3218759 - 3218738 - G 80 -12.3 -2.78422 | overlap 3218735 3218730 3218728 AGAGATAGCCAATCA CCACCGGTG GCAA CACCAGTGG CAAATGAATCACACT modA 3219697 - 3218918 - | molybdate transporter periplasmic protein TERM 3279 3219881 - 3219858 - R 89 -7.4 -5.04175 | GGAATGATACAAAAA TGCCCAACGT TTAT ACGCCAGGCA TTCAGAAATCAGAGA YpsIP31758_2851 3220084 - 3219932 - | hypothetical protein modE 3220350 - 3221141 + | DNA-binding transcriptional regulator ModE TERM 3280 3221590 - 3221616 + G 73 -8.7 -3.83026 | overlap 3221592 GCGGCCCGTGACCCG CAGCGCTGTCA ACAAC TGGCAGCGCTA TTTGGTATCAGCCAC TERM 3281 3221592 - 3221614 + G 79 -11.3 -3.5032 | overlap 3221590 GGCCCGTGACCCGCA GCGCTGTCA ACAAC TGGCAGCGC TATTTGGTATCAGCC TERM 3282 3222320 - 3222335 + G 77 -4 -5.16572 | gap 1, overlap 3222291 3222314 GCACCCGTGTACGTA CCGTGAT TTT ATC-CGG TTTTTTCGATTCGAT modF 3221251 - 3222741 + | putative molybdenum transport ATP-binding protein ModF TERM 3283 3222900 - 3222890 - f 78 -2.4 -5.44119 | TTTAGCTCAAAAAAA TGCC TTA GGCT AAACCGTCATTTAGG TERM 3284 3223366 - 3223350 - g 75 -3.6 -5.09426 | TTCAAGGTGAAAAAA CACCCA TCAGT CGGGCG CATGGGTTGGGTTGT YpsIP31758_2854 3222957 - 3223775 + | CAAX amino terminal protease family protein TERM 3285 3224988 - 3224969 - g 74 -9.2 -3.76224 | opp_overlap 3224974 GCCGCATTCAGTAAA GCCTGTGG TAAA CCACTGGC CTACCATTTTGCCCC galE 3224135 - 3225151 + | UDP-galactose-4-epimerase galT 3225161 - 3226213 + | galactose-1-phosphate uridylyltransferase galK 3226210 - 3227361 + | galactokinase galM 3227355 - 3228425 + | aldose 1-epimerase psiF 3228718 - 3229053 + | phosphate starvation-inducible protein PsiF YpsIP31758_2860 3229395 - 3229147 - | hypothetical protein gpmA 3229400 - 3230152 + | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase TERM 3286 3230203 - 3230180 - T 100 -7.5 -5.62219 | gap 1, opp_overlap 3230180 AACACAGTAAAAAAA CCCCGTACAT GAATA ATGT-CGGGG TTTTTTATTGACGGC TERM 3287 3230180 - 3230203 + T 95 -7.5 -5.4505 | gap 1, opp_overlap 3230180 AACACAGTAAAAAAA CCCCGTACAT GAATA ATGT-CGGGG TTTTTTATTGACGGC YpsIP31758_2862 3231386 - 3230334 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3288 3230778 - 3230764 - G 72 -5.7 -4.33417 | GTCACCGACAAGAAA CAGTG TGGAG CACTG GCCGCGTTGATCGCA TERM 3289 3230810 - 3230826 + g 83 -8.7 -4.56597 | CAATAGCCACTTTAA TGGTGCC GTC GGTACCA TTTTTAAAACCAACG TERM 3290 3230976 - 3230958 - G 75 -5.2 -4.72333 | opp_overlap 3230959 3230963, overlap 3230959 AATCATATCCAAAAA CTCACCGG CGG CCGGTAAC CCGCTGTCGTTAATT TERM 3291 3230963 - 3230985 + g 71 -9 -3.51411 | opp_overlap 3230959 3230958, overlap 3230959 TATCCAAAAACTCAC CGGCGGCCGG TAA CCCGCTGTCG TTAATTTCGACGAGT TERM 3292 3232091 - 3232110 + G 71 -6.4 -4.15044 | gap 1 CTTTTGGCTACCTAC GGCTGACGA CAC TCG-CGGCC TTTGTTAACGCAGCG zitB 3231853 - 3232791 + | zinc transporter ZitB pnuC 3233631 - 3232906 - | nicotinamide mononucleotide transporter PnuC nadA 3234814 - 3233753 - | quinolinate synthetase TERM 3293 3234035 - 3234019 - G 77 -4.4 -5.02074 | gap 1 GCATCTTGTAAAAAA TGCC-CC GATC GGTGGCA ACAATTAACGTTTTC TERM 3294 3234926 - 3234916 - R 70 -5.4 -4.54026 | opp_overlap 3234922, overlap 3234920 3234922 TCCTAAACAAAATAA CCAA TAT TTGG CAAAAAGTCGCCAAA TERM 3295 3235161 - 3235176 + r 73 -9 -3.5399 | overlap 3235156 ACTCGCCCTTCGGGT CAACGC TGGC GCGTTG TTGTCTCGCTCTGCT TERM 3296 3235328 - 3235343 + r 73 -9 -3.5399 | overlap 3235323 ACTCGCCCTTCGGGT CAACGC TGGC GCGTTG TTGTCTCGCTCTGCT TERM 3297 3235495 - 3235510 + r 73 -9 -3.5399 | overlap 3235490 ACTCGCCCTTCGGGT CAACGC TGGC GCGTTG TTGTCTCGCTCTGCT TERM 3298 3235662 - 3235677 + r 73 -9 -3.5399 | overlap 3235657 ACTCGCCCTTCGGGT CAACGC TGGC GCGTTG TTGTCTCGCTCTGCT TERM 3299 3236347 - 3236313 - R 100 -14.4 -4.0162 | TCTTCACACGATAAA GCCCAGAAATCAGTCA AAT TGACTAAATCCTGGGC TCAAAAAAGCTAAAG ygbF 3237166 - 3236357 - | hypothetical protein pal 3237682 - 3237176 - | peptidoglycan-associated outer membrane lipoprotein tolB 3239025 - 3237733 - | translocation protein TolB tolA 3240311 - 3239145 - | cell envelope integrity inner membrane protein TolA TERM 3300 3239463 - 3239487 + g 75 -5.1 -4.70879 | gap 1 GGCAGCAGCGGCACC TGCACCCGAA CCACTC TTCGG-TGCA TTTTTAGCGTTTGCC TERM 3301 3239533 - 3239555 + g 100 -9 -5.46657 | opp_overlap 3239521 3239519, overlap 3239535 3239547 TCATCAACATCCGTT GAGGCAGCCG CTT CTGCTGCCGC TTTTTTCTTGGCCTC TERM 3302 3239535 - 3239553 + g 71 -10.2 -2.91061 | opp_overlap 3239519, overlap 3239533 3239547 ATCAACATCCGTTGA GGCAGCCG CTT CTGCTGCC GCTTTTTTCTTGGCC TERM 3303 3239593 - 3239603 + g 79 -2.4 -5.38047 | GCAGCAACTTTTTTA GCAG CAG CGGC TTTTTTCTCTGCATC TERM 3304 3239710 - 3239729 + g 100 -9.2 -5.15969 | overlap 3239713 GCTTGTTTCTTCGCC GCAGCGGC AACA GCCGCTTC TTTTTTGGCTTCAGC TERM 3305 3239713 - 3239726 + g 100 -9.5 -4.67173 | overlap 3239710 TGTTTCTTCGCCGCA GCGGC AACA GCCGC TTCTTTTTTGGCTTC TERM 3306 3239895 - 3239908 + g 74 -3.1 -5.11254 | TTCAGCGGCCTGCTT TTGCT GTTC AGCGA TTTGTTTTTGTTGTT tolR 3240851 - 3240423 - | colicin uptake protein TolR tolQ 3241550 - 3240864 - | colicin uptake protein TolQ ybgC 3241951 - 3241550 - | acyl-CoA thioester hydrolase YbgC TERM 3307 3242063 - 3242036 - R 76 -7 -4.57218 | opp_overlap 3242034, overlap 3242039 3242040 AGAATAGAACGAAAA TAATTATGGGCC GGAT GGCCCATAGGTA GGATTGTGCTCAAGG TERM 3308 3242060 - 3242039 - R 86 -8.7 -4.36586 | opp_overlap 3242034, overlap 3242036 3242040 ATAGAACGAAAATAA TTATGGGCC GGAT GGCCCATAG GTAGGATTGTGCTCA TERM 3309 3242059 - 3242040 - R 86 -12.2 -3.20325 | opp_overlap 3242034, overlap 3242039 3242036 TAGAACGAAAATAAT TATGGGCC GGAT GGCCCATA GGTAGGATTGTGCTC YpsIP31758_2873 3242370 - 3242083 - | hypothetical protein TERM 3310 3242319 - 3242335 + g 79 -10.8 -3.45134 | opp_overlap 3242319 CGAGCACCAGTGAAA GGGCCC TCAAT GGGCCC TTATCCATTAATTCG TERM 3311 3242335 - 3242319 - G 81 -10.8 -3.69323 | opp_overlap 3242319 CGAGCACCAGTGAAA GGGCCC TCAAT GGGCCC TTATCCATTAATTCG YpsIP31758_2874 3242494 - 3242360 - | cyd operon protein YbgT cydB 3243646 - 3242507 - | cytochrome d ubiquinol oxidase, subunit II TERM 3312 3243502 - 3243521 + g 80 -7.2 -4.60487 | opp_overlap 3243502 CAATCGAGTTAATCA TGATACGG CGCT CTGTATCA TTTTTACCGATGATA cydA 3245229 - 3243661 - | cytochrome d ubiquinol oxidase, subunit I TERM 3313 3245185 - 3245169 - G 78 -5.1 -4.87786 | TTAATGGGACAAAAA GGAAATG GTA CATTGCC GTTAAGGCAAACTGT TERM 3314 3245491 - 3245470 - R 70 -8.1 -3.62046 | opp_overlap 3245470 3245469 GCATTTTGGTAACAA TGTCGTAAA TTGA TCTACGACA ATTTAAGCCTATATG TERM 3315 3245695 - 3245711 + r 70 -3.7 -4.7889 | overlap 3245690 TAAATTCAGAGTGAG TCAAATC ACA GTTTTGA TTTTTACATATTTAT TERM 3316 3245957 - 3245933 - R 93 -9.9 -4.31433 | opp_overlap 3245936, overlap 3245935 3245936 CATTTGTATAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3317 3245955 - 3245935 - R 100 -12.5 -3.75817 | opp_overlap 3245936, overlap 3245933 3245936 TTTGTATAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3318 3245954 - 3245936 - R 100 -16 -2.85008 | opp_overlap 3245936, overlap 3245935 3245933 TTGTATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3319 3245936 - 3245954 + r 100 -16 -4.8048 | opp_overlap 3245936 3245935 3245933 TTGTATAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_2877 3246544 - 3246035 - | IS1541, transposase TERM 3320 3246606 - 3246624 + r 100 -16 -4.36914 | opp_overlap 3246606 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3321 3246624 - 3246606 - R 100 -16 -3.07307 | opp_overlap 3246606 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3322 3246660 - 3246643 - R 100 -12.7 -5.24129 | opp_overlap 3246641 TCTGGGCACAAAAAA GGCCACC AAAA GGTGGCC AGTATGTCGCGTTAG sucD 3247579 - 3246707 - | succinyl-CoA synthetase subunit alpha sucC 3248745 - 3247579 - | succinyl-CoA synthetase subunit beta TERM 3323 3248491 - 3248505 + g 73 -2.1 -5.08824 | overlap 3248492 TCCGTTGGCATCTGT TTGGT AAGTG ACCAG TTTTTTACCTAGCCA TERM 3324 3248773 - 3248786 + r 70 -9.5 -2.81045 | overlap 3248770 ATATAAGGTCTGAGA CGGGC CGAA GCCCG TAGTGTTCTGGATAA sucB 3250081 - 3248858 - | dihydrolipoamide acetyltransferase sucA 3252918 - 3250111 - | alpha-ketoglutarate decarboxylase TERM 3325 3251239 - 3251256 + g 76 -8.3 -4.08919 | AGAGCTGATCCGACG CGCCAGC TCTT GCAGGCG TTTCATTTCAACTTT TERM 3326 3252359 - 3252375 + g 82 -5.1 -5.12971 | opp_overlap 3252357 3252359, overlap 3252363 ACAACCGATTCAATA CGCTG CTGAATC CAGCG TTTTTCTTCGGTGTT TERM 3327 3252859 - 3252832 - G 80 -6.4 -4.68994 | gap 1, opp_overlap 3252832, overlap 3252834 AGGATCAGTTAAAAA GTC-TTCATAGAG CTG CTCTATGTAGGAC TGGTTCGCGCCTGCC TERM 3328 3253011 - 3253025 + r 70 -7.1 -3.75378 | AAACGGTTCACTCGA CGTGC TCAAT GCACG TTCTGTTATGGACCT TERM 3329 3253135 - 3253114 - R 86 -12.3 -2.53263 | opp_overlap 3253114 CCTACCGTGAAGCTA CCCGGAGAA TCCC CTCTCCGGG TTAATAAATTCACAT TERM 3330 3253114 - 3253135 + r 84 -11.6 -3.22091 | opp_overlap 3253114 CCTACCGTGAAGCTA CCCGGAGA ATCCCC TCTCCGGG TTAATAAATTCACAT sdhB 3253990 - 3253274 - | succinate dehydrogenase iron-sulfur subunit sdhA 3255806 - 3254040 - | succinate dehydrogenase flavoprotein subunit TERM 3331 3255085 - 3255054 - G 79 -11.6 -3.18264 | gap 1, opp_overlap 3255081 3255082, overlap 3255056 GCCTTCAGTCACTAA TACACCCGCACCGGC AAT ACCGGT-CGGGTGGA ACTGCCACATTTCCA TERM 3332 3255083 - 3255056 - G 90 -14.2 -3.1552 | gap 1, opp_overlap 3255081 3255082, overlap 3255054 CTTCAGTCACTAATA CACCCGCACCGGC AAT ACCGGT-CGGGTG GAACTGCCACATTTC sdhD 3256154 - 3255807 - | succinate dehydrogenase cytochrome b556 small membrane subunit sdhC 3256525 - 3256148 - | succinate dehydrogenase cytochrome b556 large membrane subunit TERM 3333 3257440 - 3257422 - g 70 -2.5 -4.8622 | gap 1 CCTGCGAATCAAAAA TCACCTAT ATTG AT-GGTGA TCAGGGTATTTTGCT gltA 3257256 - 3258536 + | type II citrate synthase TERM 3334 3258597 - 3258566 - T 79 -10.9 -3.09823 | opp_overlap 3258571, overlap 3258561 3258571 CCGCGTAAAATTAGA GCAAAGTCCCGGC TAGGAG GCCAGGACTTTGT TAGCAATTTGAGGCA TERM 3335 3258592 - 3258571 - T 83 -9.4 -3.92694 | opp_overlap 3258571, overlap 3258566 3258561 TAAAATTAGAGCAAA GTCCCGGC TAGGAG GCCAGGAC TTTGTTAGCAATTTG TERM 3336 3258571 - 3258592 + T 76 -7.9 -4.19371 | opp_overlap 3258566 3258561 3258571 TAAAATTAGAGCAAA GTCCCGGCT AGGA GGCCAGGAC TTTGTTAGCAATTTG TERM 3337 3258609 - 3258625 + T 85 -9.4 -4.19238 | TTGTTAGCAATTTGA GGCACC GTTGA GGTGCC TTTTAACGTTAGAGC grpE 3259222 - 3258644 - | co-chaperone GrpE YpsIP31758_2888 3259346 - 3260227 + | inorganic polyphosphate/ATP-NAD kinase recN 3260314 - 3261975 + | recombination and repair protein TERM 3338 3262361 - 3262345 - g 74 -3 -5.14563 | CTGGTCACGAAAAAA TAACGC AACAA ACGTTA ACGTTGACCTTTGAT YpsIP31758_2890 3262089 - 3262430 + | hypothetical protein TERM 3339 3262561 - 3262583 + T 78 -4.1 -5.1101 | opp_overlap 3262562, overlap 3262562 3262565 GAGTGACAACAAAAA ATAAGGCGC TGATT GTGCCTTAC TTTTTTGCCTGCTCA TERM 3340 3262562 - 3262582 + T 70 -7.6 -3.65883 | opp_overlap 3262562, overlap 3262561 3262565 AGTGACAACAAAAAA TAAGGCGC TGATT GTGCCTTA CTTTTTTGCCTGCTC TERM 3341 3262582 - 3262562 - T 87 -5.4 -5.56673 | opp_overlap 3262562 3262561 3262565 AGTGACAACAAAAAA TAAGGCGC TGATT GTGCCTTA CTTTTTTGCCTGCTC YpsIP31758_2891 3262864 - 3262580 - | hypothetical protein YpsIP31758_2892 3263291 - 3262857 - | hypothetical protein smpB 3263452 - 3263934 + | SsrA-binding protein TERM 3342 3264393 - 3264419 + F 100 -9.3 -5.4492 | opp_overlap 3264393 GGTGAAGTACGAAAA GCCCGCATCCC ACCTA GGTTTGCGGGC TTTTTTGTGTCTGTA TERM 3343 3264419 - 3264393 - f 88 -9.3 -4.3534 | opp_overlap 3264393 GGTGAAGTACGAAAA GCCCGCATCCC ACCTA GGTTTGCGGGC TTTTTTGTGTCTGTA YpsIP31758_2895 3264540 - 3265070 + | phage integrase family protein YpsIP31758_2896 3265119 - 3265382 + | transposase TERM 3344 3265793 - 3265780 - f 78 -9.5 -3.737 | opp_overlap 3265778 3265775 CAACCTTCTACGAAA GGGGC GTTC GCCCC AATAGTTAATCAAGA YpsIP31758_2897 3266331 - 3266459 + | hypothetical protein TERM 3345 3266510 - 3266522 + F 87 -4.9 -5.4492 | opp_overlap 3266508 3266510, overlap 3266498 TCTTCATCAACAAGA TGATT ATT AATCA TTTTTTATATCTATC YpsIP31758_2898 3266775 - 3267542 + | hypothetical protein YpsIP31758_2899 3267874 - 3268161 + | LexA regulated protein TERM 3346 3268209 - 3268180 - f 81 -10.7 -3.40403 | opp_overlap 3268173 3268180 TGTCGGTTACCACAA CGGCGTGGTGTAA GTGA TTACGCCACGCTG TTATTACTTTTATGC TERM 3347 3268180 - 3268209 + F 100 -15.1 -3.9978 | opp_overlap 3268180, overlap 3268173 TGTCGGTTACCACAA CGGCGTGGTGTAA GTGA TTACGCCACGCTG TTATTACTTTTATGC YpsIP31758_2900 3268294 - 3268542 + | hypothetical protein fldA 3268615 - 3269142 + | flavodoxin FldA YpsIP31758_2902 3269509 - 3269955 + | ferric uptake regulator TERM 3348 3270285 - 3270267 - T 100 -11.7 -5.40072 | TTTCGGGCAAAAAAA TCCCCGG ACCAG CCGGGGA AATACGATCAACTCA chb 3273071 - 3270396 - | chitobiase TERM 3349 3270885 - 3270855 - G 72 -10.4 -3.05844 | overlap 3270868 CGTTTCATTCCAAGA CTGACCGGAGATAC CCT GTACACCCGGCCAG GGTTTATCACTCTTC YpsIP31758_2904 3273197 - 3273334 + | hypothetical protein YpsIP31758_2905 3274820 - 3273399 - | OprD family outer membrane porin TERM 3350 3274444 - 3274462 + g 71 -7.4 -4.11623 | TCGTCCCAGCGGGTT TTGGCGTC ACT GAAGCCAA TTTCATTTGGTGCTG YpsIP31758_2906 3274956 - 3275078 + | hypothetical protein TERM 3351 3275519 - 3275500 - T 100 -10.7 -5.4251 | opp_overlap 3275498 GTCAGAGACAAAAAA GGCGTGG ACTGTG CCACGCC AATTGAATCTGAGCG glnS 3277209 - 3275542 - | glutaminyl-tRNA synthetase TERM 3352 3277333 - 3277310 - R 100 -15.4 -6.17669 | opp_overlap 3277310 AACAAAACAAAAAAA CGGGAAGAGA TCGC TCTCTTCCCG TTGGTTCGATTAAAA TERM 3353 3277310 - 3277333 + r 100 -15.4 -3.4052 | opp_overlap 3277310 AACAAAACAAAAAAA CGGGAAGAGA TCGC TCTCTTCCCG TTGGTTCGATTAAAA nagE 3279457 - 3277424 - | PTS system, N-acetylglucosamine-specific IIBC component TERM 3354 3279540 - 3279530 - H 74 -6.8 -4.37886 | CTACCTTTTAGAAAA GTGC ATG GCAC ACATTATATAAACAC nagB 3279856 - 3280656 + | glucosamine-6-phosphate deaminase TERM 3355 3281048 - 3281038 - g 79 -2.4 -5.42862 | ATATCTGCAAAAAAA CCAG CAT CAGG CGCTCGGCTTGCACC nagA 3280676 - 3281821 + | N-acetylglucosamine-6-phosphate deacetylase nagC 3281838 - 3283064 + | N-acetylglucosamine repressor TERM 3356 3283080 - 3283095 + F 73 -9 -3.42346 | opp_overlap 3283077 GTTGAAAGAAACTGT CATGGC CACA GCCATG TTATAGTGACCTATT nagD 3283137 - 3283889 + | UMP phosphatase asnB 3284244 - 3285908 + | asparagine synthetase B TERM 3357 3285939 - 3285922 - T 78 -9.8 -3.53189 | AATTGAACACGATAA GCGGGG TTAATC CCCCGC GCCGACTGCTGACAA TERM 3358 3286092 - 3286116 + T 100 -14.3 -5.47218 | opp_overlap 3286091 3286087 3286092 3286095 ATAGAGAATAGATAG CAAGGTCGCCT CTG GGGCGGCCTTG TTTTTTTACGTCACC TERM 3359 3286116 - 3286092 - T 79 -11.4 -2.50385 | opp_overlap 3286092, overlap 3286091 3286087 3286095 ATAGAGAATAGATAG CAAGGTCGCC TCTGG GGCGGCCTTG TTTTTTTACGTCACC TERM 3360 3286627 - 3286589 - T 79 -11.7 -2.53911 | opp_overlap 3286580 3286592 CCAAGCGGTAAGGCA CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG TATCCCAGCCATCTT TERM 3361 3286785 - 3286747 - T 79 -11.7 -2.53911 | opp_overlap 3286750 CCAAGCGGTAAGGCA CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG TATCCCAGCCATACA TERM 3362 3287012 - 3286997 - T 73 -6 -4.51196 | opp_overlap 3286997, overlap 3286992 GCCAAATTTAGAAAA GCTCGC TTCG GCGGGC TTTTTGCTTTTTCAT TERM 3363 3286997 - 3287012 + T 100 -8.2 -5.1971 | opp_overlap 3286997 3286992 GCCAAATTTAGAAAA GCTCGC TTCG GCGGGC TTTTTGCTTTTTCAT TERM 3364 3287221 - 3287197 - T 100 -16.5 -2.73364 | overlap 3287213 CCGTCAGCGGAATGA TGAGCCCGGCA GAA TACCGGGCTCA GGCAGAAAGGCAGTA ubiF 3288579 - 3287398 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 3365 3288609 - 3288624 + H 70 -5.4 -4.52589 | opp_overlap 3288623, overlap 3288610 AAAAGTGAATGTACT TCTTGC ATTA GCAAGG TTTTGTCTAACCGCA miaB 3288821 - 3290245 + | tRNA-I(6)A37 thiotransferase enzyme MiaB TERM 3366 3290319 - 3290342 + F 86 -6.7 -5.07652 | opp_overlap 3290321, overlap 3290321 TCCCGCCCGCGTAAC GAGGCACTG CATTGT CAGTGCCTG TTTTATTTTAGCGGG TERM 3367 3290321 - 3290340 + F 85 -9.3 -4.16397 | opp_overlap 3290321, overlap 3290319 CCGCCCGCGTAACGA GGCACTG CATTGT CAGTGCC TGTTTTATTTTAGCG YpsIP31758_2916 3290572 - 3291645 + | PhoH family protein YpsIP31758_2917 3291642 - 3292115 + | putative metalloprotease TERM 3368 3292383 - 3292373 - g 73 -5.4 -4.64676 | overlap 3292374 TGATTCTGAACAAAA CGAT CTG ATCG ATCCCGATACCCGAG corC 3292233 - 3293111 + | magnesium and cobalt efflux protein CorC TERM 3369 3293143 - 3293169 + G 79 -11.6 -3.11701 | overlap 3293154 3293156 GCTCTATTCCTCCAA CGCCAGTGGG TTCGCGC CCTACTGGCG CTATTTTTTGGTGCC TERM 3370 3293154 - 3293172 + G 85 -5.9 -5.17353 | overlap 3293143 3293156 CCAACGCCAGTGGGT TCGCGCC CTACT GGCGCTA TTTTTTGGTGCCTGT TERM 3371 3293156 - 3293170 + G 77 -8.5 -4.2131 | overlap 3293143 3293154 AACGCCAGTGGGTTC GCGCC CTACT GGCGC TATTTTTTGGTGCCT lnt 3293119 - 3294666 + | apolipoprotein N-acyltransferase TERM 3372 3294917 - 3294929 + F 74 -4.1 -4.97666 | TAGTGCTTCCAGTCA CAGAT AAC GTCTG TTTTTCTCATCTGTT TERM 3373 3294971 - 3294991 + F 79 -11.2 -3.11178 | TCTATTCGTACCTGA TAGCCCTG CACTC CAGGGCTA TATTCCGCTTAGTTC TERM 3374 3295601 - 3295585 - g 75 -5.1 -4.7416 | opp_overlap 3295588 GCAAAAGGTTAAAAA CAACGGT GTT ATCGTTG TGGGCCACCGTGAAT TERM 3375 3295906 - 3295895 - g 77 -4.4 -5.1675 | opp_overlap 3295896 3295897, overlap 3295897 TTACTCACCAAAAAA GACT CTGA AGTC AAAGACTTCAAAGAT TERM 3376 3295919 - 3295897 - g 91 -11.4 -4.2131 | opp_overlap 3295896 3295897, overlap 3295895 ACTCACCAAAAAAGA CTCTGAAGTC AAA GACTTCAAAG ATTTGGCAGGTAAAG gltI 3295463 - 3296380 + | glutamate and aspartate transporter subunit TERM 3377 3296411 - 3296393 - f 77 -10.2 -3.07102 | overlap 3296390 TAACAATAATAATCA GGGCGGGT CAT ACCTGCCC TACCGATTGATGATG TERM 3378 3296445 - 3296471 + F 100 -15.2 -5.60993 | opp_overlap 3296442 3296445 TATTGGTAGACAGGA TGCGGGGTGG TCGTTCC CCACCCCGCA TTTTTTTGTCAACCC TERM 3379 3296471 - 3296445 - f 100 -15.2 -2.69468 | opp_overlap 3296445, overlap 3296442 TATTGGTAGACAGGA TGCGGGGTGG TCGTTCC CCACCCCGCA TTTTTTTGTCAACCC gltJ 3296554 - 3297294 + | glutamate/aspartate ABC transporter, permease protein GltJ gltK 3297294 - 3297968 + | glutamate/aspartate ABC transporter, permease protein GltK gltL 3297968 - 3298693 + | glutamate/aspartate ABC transporter, ATP-binding protein TERM 3380 3298698 - 3298729 + T 87 -5 -5.49579 | overlap 3298699 3298702 TCTTGCATTAATTCG TTCTCCTCCCCTGC GTTT GTAGGGGAGGTCAC TTTTATTTTTTATGA TERM 3381 3298699 - 3298728 + T 75 -8.5 -3.87307 | overlap 3298698 3298702 CTTGCATTAATTCGT TCTCCTCCCCTGC GTTT GTAGGGGAGGTCA CTTTTATTTTTTATG TERM 3382 3298702 - 3298725 + T 100 -14.6 -2.95933 | overlap 3298699 3298698 GCATTAATTCGTTCT CCTCCCCTGC GTTT GTAGGGGAGG TCACTTTTATTTTTT YpsIP31758_2924 3299309 - 3298827 - | hypothetical protein YpsIP31758_2925 3299393 - 3299512 + | hypothetical protein TERM 3383 3301496 - 3301479 - g 73 -3.4 -4.85599 | opp_overlap 3301483 GTCATGGTAGAAAAA TACGGC GCGGAT ACCGTA CGTCTGTTTATGATG leuS 3299571 - 3302153 + | leucyl-tRNA synthetase TERM 3384 3302195 - 3302229 + G 74 -6.3 -4.34402 | ATTCTGACGTTGTTG CTGGGGTTGGCGGTG CTGGT CACCGCTGGCTGCGG TTTTAATCTGCGGGG rlpB 3302168 - 3302791 + | LPS-assembly lipoprotein RplB TERM 3385 3302816 - 3302843 + G 78 -9 -3.98649 | opp_overlap 3302812, overlap 3302817 ACCCTGAACAACTTG TCGCGCAGCTCC ATGA GGGGCTACGCGC TTGTTATCTATTGTG TERM 3386 3302817 - 3302842 + G 81 -12.5 -2.98105 | opp_overlap 3302812, overlap 3302816 CCCTGAACAACTTGT CGCGCAGCTCC ATGA GGGGCTACGCG CTTGTTATCTATTGT holA 3302788 - 3303822 + | DNA polymerase III subunit delta nadD 3303812 - 3304474 + | nicotinic acid mononucleotide adenylyltransferase TERM 3387 3304918 - 3304935 + T 100 -9.8 -5.72622 | opp_overlap 3304917 3304916 ATATGAATGAATAGG CCGGGC AGTTAA GCCCGG TTTTTTATTTCTCAA YpsIP31758_2930 3306721 - 3304940 - | Ig-like domain-containing protein YpsIP31758_2931 3308798 - 3306939 - | hypothetical protein TERM 3388 3308785 - 3308768 - G 100 -8.4 -5.60993 | GCGTCCATAAAAAAA CCCACC AAAAAA GGTGGG CCAGTAATTGCATTT YpsIP31758_2932 3309634 - 3308807 - | hypothetical protein YpsIP31758_2933 3310886 - 3309687 - | hypothetical protein TERM 3389 3310149 - 3310163 + g 79 -10 -3.84825 | opp_overlap 3310147 GCCATGCACGCAAGC CCACAC GCT GTGTGG TTTCATATAAATGCC YpsIP31758_2934 3311229 - 3310870 - | hypothetical protein TERM 3390 3311110 - 3311120 + g 71 -6.8 -4.21936 | overlap 3311108 3311118 TTCATTTCGTTGGGC CAGC ATG GCTG TTTTGCAGTTCTGCA YpsIP31758_2935 3311903 - 3311226 - | hypothetical protein YpsIP31758_2936 3312724 - 3311885 - | hypothetical protein TERM 3391 3312614 - 3312627 + g 73 -2.3 -5.06451 | CGTGCATTCATTTTG CAACG AACC CGCTG TTTTTTGCCCTGATG YpsIP31758_2937 3313030 - 3312728 - | hypothetical protein YpsIP31758_2938 3313556 - 3313032 - | hypothetical protein YpsIP31758_2939 3314104 - 3313556 - | hypothetical protein YpsIP31758_2940 3314840 - 3314169 - | hypothetical protein YpsIP31758_2941 3315627 - 3314833 - | hypothetical protein YpsIP31758_2942 3316189 - 3315581 - | hypothetical protein YpsIP31758_2943 3316548 - 3316186 - | hypothetical protein YpsIP31758_2944 3317088 - 3316570 - | pentapeptide repeat-containing protein TERM 3392 3317132 - 3317118 - R 100 -7.1 -5.64274 | opp_overlap 3317118 3317116 TTAGGTACAAAAAAA GCTGC ATTAA GCAGC TCGTTGTTTGTTTCA TERM 3393 3317146 - 3317194 + r 100 -15.5 -2.71731 | overlap 3317148 GCTCGTTGTTTGTTT CAGTGGTCTTATTGCTGCCAC CGGTTAA GTGGCAGGGGTAAGATCACTG TGGTTCCGAGATGAA TERM 3394 3317148 - 3317192 + r 93 -12.3 -2.90392 | overlap 3317146 TCGTTGTTTGTTTCA GTGGTCTTATTGCTGCCAC CGGTTAA GTGGCAGGGGTAAGATCAC TGTGGTTCCGAGATG TERM 3395 3317357 - 3317341 - R 95 -7.2 -5.4505 | opp_overlap 3317341 CCCGCCAATAAAAAA GGCCGC GTTAT GCAGCC TTGAATCCTGTAACC TERM 3396 3317612 - 3317599 - R 100 -8.1 -5.4833 | TTAGGCAATAAAAAA GCACC TGAA GGTGC CGGGTGAAATCACTG YpsIP31758_2945 3317810 - 3317622 - | hypothetical protein TERM 3397 3318194 - 3318204 + G 71 -4 -4.7329 | CGGCATCTGCTAAGT TGAT GCG ATCA TTTTTGACTGATTTT int 3317905 - 3318843 + | integrase YpsIP31758_2947 3318918 - 3319235 + | hypothetical protein YpsIP31758_2948 3319239 - 3319709 + | SPOUT methyltransferase superfamily protein TERM 3398 3320170 - 3320157 - g 81 -8.1 -4.62471 | GCTAACTTTGAAAAA GAGCG CAAA CGCTC ACGTCGCTTTACCTC TERM 3399 3321142 - 3321116 - g 70 -2.2 -4.86033 | overlap 3321117 3321118 AAAGCGCCATAAAAA GCCTTGGTATCA GGG TGATACCATTCC GGTAGGTATTGGCCA TERM 3400 3321489 - 3321512 + G 74 -8.9 -3.78022 | GTGGCAGAACACCTG CGCGACCAT AAGTTA ATGGTTGCG TTTGCTCCCTATGAG mrdA 3319791 - 3321686 + | penicillin-binding protein 2 TERM 3401 3322399 - 3322409 + G 71 -8.2 -3.76767 | overlap 3322397 3322398 ATCAATTCTGGTTGC GGCC TCC GGCC TGTTTGTGTTGTTCC mrdB 3321899 - 3323011 + | cell wall shape-determining protein YpsIP31758_2951 3323021 - 3324103 + | rare lipoprotein A TERM 3402 3324184 - 3324147 - f 100 -14.3 -5.14163 | opp_overlap 3324144 3324158 3324179 ACTGACTAATAAAAA TAACCGTAACCGCCTGT GCAA ACAGGGTGTTACGGTTA AAACTGTTTGGGTGA YpsIP31758_2952 3324506 - 3325708 + | D-alanyl-D-alanine carboxypeptidase fraction A TERM 3403 3325812 - 3325841 + F 72 -6.3 -4.3739 | opp_overlap 3325813, overlap 3325818 TATCTGGCGAACAGT ACGTCACTCCCGC TCCG GCGGGAGTTGTGA TTTTATAGCCGGATA TERM 3404 3325818 - 3325835 + F 100 -12.7 -3.72405 | opp_overlap 3325813, overlap 3325812 GCGAACAGTACGTCA CTCCCGC TCCG GCGGGAG TTGTGATTTTATAGC YpsIP31758_2953 3325906 - 3326169 + | hypothetical protein TERM 3405 3326235 - 3326264 + F 86 -7.9 -4.62085 | gap 2, opp_overlap 3326234, overlap 3326231 CAACGCGCTAATGAC GGCCC-GC-CCTG TTTATT CAGGTGCCGGGCC TTATTTTTTCGGGGT lipB 3326381 - 3327082 + | lipoyltransferase TERM 3406 3327248 - 3327236 - f 80 -6.3 -4.90013 | GAATTTAATGAAAAA TCTCA AGT TGAGA GATTCAGAACTGGAA lipA 3327275 - 3328240 + | lipoyl synthase TERM 3407 3328274 - 3328256 - T 74 -9.6 -3.38046 | opp_overlap 3328256, overlap 3328241 3328254 3328257 GCGGTAGGCTAAAGA CTTCAGCC CAT GGCTGAAA TAACTTATTACACCT TERM 3408 3328273 - 3328257 - T 76 -10.9 -2.62613 | opp_overlap 3328256, overlap 3328241 3328256 3328254 CGGTAGGCTAAAGAC TTCAGCC CAT GGCTGAA ATAACTTATTACACC TERM 3409 3328332 - 3328312 - T 100 -9.7 -5.1675 | opp_overlap 3328312 GCAGCCACCAAAAAA CGGATTTCC ATT GGAGATCCG TTTTTTTTATCAGCC TERM 3410 3328312 - 3328332 + T 100 -11.9 -5.93809 | opp_overlap 3328312 GCAGCCACCAAAAAA CGGATTTCC ATT GGAGATCCG TTTTTTTTATCAGCC tatA2 3328678 - 3328421 - | twin argininte translocase protein A crcB 3329262 - 3329645 + | crcB protein TERM 3411 3330030 - 3330047 + T 100 -9.8 -4.61231 | opp_overlap 3330030 GCTACCCATAAAAAA CCCGCC CAGTAA GGCGGG TTTTTAAAGATATGG TERM 3412 3330047 - 3330030 - T 100 -10.5 -5.28176 | opp_overlap 3330030 GCTACCCATAAAAAA CCCGCCC AGTA AGGCGGG TTTTTAAAGATATGG YpsIP31758_2958 3330277 - 3330068 - | cold shock protein CspE YpsIP31758_2959 3330553 - 3331035 + | cold-shock DNA-binding domain-containing protein TERM 3413 3331178 - 3331202 + T 75 -7.2 -4.26076 | AGAGGCTGATCGTAG CGGTATCGTT TTAGC AACGGTATCG TTTTAGTAACGGTAA YpsIP31758_2960 3331915 - 3331325 - | LuxR family transcriptional regulator TERM 3414 3331733 - 3331712 - G 85 -5.7 -5.05505 | opp_overlap 3331712 3331731, overlap 3331717 ATCACAAATCAAAAA GACATCCGC TTCT GCGGGGGTC TTATCCAGACGTTTG TERM 3415 3331833 - 3331857 + g 90 -2.9 -5.78622 | overlap 3331835 TAGAATTTAATCTCT TTTTTAAATCC TAA GGATGTGAAGA TTTTTTTTACGATAG YpsIP31758_2961 3332365 - 3333330 + | hypothetical protein YpsIP31758_2962 3333407 - 3333604 + | hypothetical protein YpsIP31758_2963 3333904 - 3333710 - | hypothetical protein YpsIP31758_2964 3334347 - 3334634 + | antibiotic biosynthesis monooxygenase domain-containing protein YpsIP31758_2965 3336440 - 3334650 - | heavy metal ABC transporter (HMT) family permease/ATP-binding protein TERM 3416 3336088 - 3336066 - G 72 -10.6 -2.94695 | overlap 3336068 3336070 CTCAATAGATAATGA TAGACCGCCA GTC TGGCGCTCTA GGTGAAACCGCAAAC YpsIP31758_2966 3336505 - 3336807 + | hypothetical protein TERM 3417 3336937 - 3336926 - T 75 -3 -5.24551 | opp_overlap 3336926 TCAAACGAATAAAAA CAAA GCGA TTTG GTTATTCACAATAAA TERM 3418 3337021 - 3336990 - T 86 -9 -4.27694 | opp_overlap 3336989 3336983, overlap 3336987 3337018 3337020 CTAATTAATAAACAA CCTATTACATAA TAAACAAT TTATGTAATAGG ATAATTATGATTTAT YpsIP31758_2967 3337825 - 3337010 - | putative myo-inositol catabolism protein IolB TERM 3419 3337695 - 3337671 - G 70 -9.9 -3.1944 | opp_overlap 3337690, overlap 3337663 ATCAAAACCAGGCAA CGCTCATCGGG AAC CGCGGTGAGCG TCAGTGGCTGCCCTT YpsIP31758_2968 3338755 - 3337835 - | AP endonuclease TERM 3420 3338041 - 3338052 + g 72 -5.8 -4.31329 | CACTCAACACCGCGT CCAG AAAA CTGG TTTTACGGTTTTTGA YpsIP31758_2969 3340818 - 3338854 - | PfkB family kinase TERM 3421 3340482 - 3340495 + g 75 -3.7 -5.05601 | TACTCAGGAGTACCA GCGCC GTGA GCCGC TTTTTATCTGTGGTC YpsIP31758_2970 3342006 - 3340873 - | Gfo/Idh/MocA family oxidoreductase rbsC5 3343058 - 3342030 - | ribose ABC transporter, permease protein TERM 3422 3342979 - 3342968 - G 73 -2.2 -5.1244 | overlap 3342971 GCAGGAACATAAAAA TCAG GACG CCGA AGCGTTCAAAAAAAG rbsA4 3344617 - 3343070 - | ribose ABC transporter, ATP-binding protein rbsB4 3345595 - 3344666 - | ribose ABC transporter, periplasmic ribose-binding protein TERM 3423 3345372 - 3345357 - G 73 -3.2 -4.84311 | gap 1, opp_overlap 3345365, overlap 3345358 GGCGAGACAATAAAA CCCTGCG CGC CAC-GGG TGATGGCATTTTCCA YpsIP31758_2974 3346671 - 3345685 - | oxidoreductase, NAD-binding YpsIP31758_2975 3346981 - 3346832 - | hypothetical protein YpsIP31758_2976 3348911 - 3346965 - | thiamine pyrophosphate-dependent enzyme TERM 3424 3347813 - 3347789 - G 81 -12.9 -2.70932 | overlap 3347791 CTTTGGCCTCAATGA TATCGCCCTGC CAA GCAGTGCGATA ACCTGCCAGCCCTTC TERM 3425 3347811 - 3347791 - G 74 -11.1 -2.90075 | overlap 3347789 TTGGCCTCAATGATA TCGCCCTGC CAA GCAGTGCGA TAACCTGCCAGCCCT TERM 3426 3348069 - 3348051 - G 72 -11 -2.5655 | overlap 3348050 GCCAGTGACACCAAT TCCCCCCA AGT TGAGGGGA TGATCACTTGGCAGC mmsA 3350451 - 3348925 - | methylmalonate-semialdehyde dehydrogenase YpsIP31758_2978 3350778 - 3351632 + | RpiR family transcriptional regulator TERM 3427 3351820 - 3351798 - f 77 -10.6 -3.14344 | CATCTGCTGTACCAA CGCCCTGAAA CGC TCTCAGGGCA TGACTCTGCCATAGC TERM 3428 3353411 - 3353393 - g 81 -11 -3.61894 | AATCTGCTGCAACAA TCAACGCC GCT GGCGCTGA CCCTCAATGAGGCCG TERM 3429 3354247 - 3354230 - g 73 -5.5 -4.56597 | opp_overlap 3354233, overlap 3354235 TTCCTGGTGGAAAAA GAAGGGG ATGT CTCCTTC CTGCCCACCCGAGCC TERM 3430 3354927 - 3354911 - g 85 -12.3 -3.37056 | opp_overlap 3354910 ACGACCGATCTACAA GGGATGG CGA CCATCCC ATTGGATCTGAAATC YpsIP31758_2979 3352172 - 3358168 + | alpha-2-macroglobulin domain-containing protein TERM 3431 3358206 - 3358176 - f 83 -9 -4.23434 | gap 1, overlap 3358179 3358180 CAAAATAGCTGAAAA CAAC-GCGCCCCG CATCGC CGGGGCGCTATCG GATTTCAGCCGTAAC TERM 3432 3358202 - 3358179 - f 93 -10.9 -4.2142 | overlap 3358176 3358180 AATAGCTGAAAACAA CGCGCCCCG CATCGC CGGGGCGCT ATCGGATTTCAGCCG TERM 3433 3358201 - 3358180 - f 100 -14.4 -3.11767 | overlap 3358179 3358176 ATAGCTGAAAACAAC GCGCCCCG CATCGC CGGGGCGC TATCGGATTTCAGCC TERM 3434 3359913 - 3359934 + G 73 -7.2 -4.15114 | CAACAGCGCCTTTGT CGGTGCCG ATGCCG CCGCACCG TTATTCTTTAATATT pbpC 3358225 - 3360588 + | penicillin-binding protein 1C TERM 3435 3360760 - 3360734 - T 95 -8.1 -5.16237 | gap 2 AAGGGGATCAAAAAA GCCCCAC-A-GGT CAC ACCATTGTGGGGC AGCAATCTCGCGTTT YpsIP31758_2981 3361046 - 3360801 - | sugar fermentation stimulation protein B TERM 3436 3361495 - 3361471 - H 73 -5.7 -4.44355 | opp_overlap 3361471, overlap 3361473 TAATTCTAAAAATAA GTTGAATGGCT CAT ACCCATTCAGC TCTGGTCATCTTCTT TERM 3437 3361508 - 3361520 + H 78 -4.1 -5.24551 | overlap 3361516 AGCTCTGGTCATCTT CTTCG TAA TGAAG TTTTTCTTCATTTAA TERM 3438 3361957 - 3361971 + G 100 -5.7 -5.76949 | CTATTTTTTCCTGTA CCGAT CCCAC ATCGG TTTTTTTTGGCAGTC YpsIP31758_2982 3361719 - 3362582 + | hypothetical protein TERM 3439 3362716 - 3362738 + T 71 -4.8 -4.58859 | TTTTCATGGAAGGTT GGGTTTGTAA TAT TTGCAGTCCC TTTATTGTTCTATTT TERM 3440 3363076 - 3363041 - T 72 -7.9 -3.76767 | gap 2, opp_overlap 3363048, overlap 3363039 3363042 TGAAGAATATAAATA TG-T-TCAAGCACACTT GAAA AAGTGTGCTTGATATCA GAAACTAGTAAACCC TERM 3441 3363048 - 3363067 + T 81 -10.8 -3.25942 | opp_overlap 3363042 3363041 3363039 TATAAATATGTTCAA GCACACTT GAAA AAGTGTGC TTGATATCAGAAACT YpsIP31758_2983 3363560 - 3363081 - | hypothetical protein YpsIP31758_2984 3363835 - 3363584 - | hypothetical protein TERM 3442 3364839 - 3364861 + H 78 -9.8 -3.54926 | opp_overlap 3364843, overlap 3364837 GATAAACATAACGTT CAAACCGTCC CAA GGGCGGTGTG TCTCTTTTTACAATG TERM 3443 3365474 - 3365451 - g 83 -11.8 -3.53012 | gap 1, opp_overlap 3365442 3365450 3365461 CGGGTCTGGTCGAAA TCG-GCCCTTC CTG GAAGGGCACGA GTATCGTGCCGCTTC YpsIP31758_2985 3364922 - 3366838 + | putative autotransporter protein TERM 3444 3366953 - 3366927 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3366936, overlap 3366928 3366943 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3445 3366954 - 3366928 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3366936, overlap 3366927 3366943 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3446 3367030 - 3367051 + T 91 -6.5 -5.56264 | opp_overlap 3367027, overlap 3367033 CTTTGTCAATAACCT CAGCCCCTC TTCT GAGGGGTTA TTTTTTCTATTTCAC TERM 3447 3367033 - 3367048 + T 100 -10.4 -4.8277 | opp_overlap 3367027, overlap 3367030 TGTCAATAACCTCAG CCCCTC TTCT GAGGGG TTATTTTTTCTATTT TERM 3448 3367104 - 3367092 - T 95 -3.4 -6.28631 | TAAATTAAAAAAAAA TGCT CAGTC AGCA AGATAATTTCCACAA YpsIP31758_2988 3369074 - 3367953 - | cupin family protein YpsIP31758_2989 3369338 - 3369165 - | hypothetical protein YpsIP31758_2990 3370241 - 3369369 - | 23S rRNA pseudouridine synthase F TERM 3449 3369429 - 3369443 + g 80 -4.2 -5.252 | overlap 3369419 GGATGCGGTGTTGTC GTCGGA TTT TTCGGC TTTTTTCTGCCCCTG TERM 3450 3370161 - 3370145 - G 73 -2.3 -5.07486 | TACCGTTAATAAAAA CATTG CCCTGTT CAATG TAGCGATCGCCATCG YpsIP31758_2991 3370467 - 3370628 + | hypothetical protein TERM 3451 3370808 - 3370821 + G 71 -4.5 -4.57482 | overlap 3370804 GGTGTCCGGCCCGGA CGTCA GGCT TGGCG TTTGTTTCTCAGTAG YpsIP31758_2992 3370664 - 3372871 + | hypothetical protein TERM 3452 3373108 - 3373086 - g 89 -6.2 -5.34365 | opp_overlap 3373086 3373087, overlap 3373080 3373087 GCAGAACAAGAAAAA TGCAGAGAAG AGC CTTCACTGCC TTGTCCTGAGTCCAA TERM 3453 3373107 - 3373087 - g 76 -9.7 -3.78992 | opp_overlap 3373087 3373086, overlap 3373086 3373080 CAGAACAAGAAAAAT GCAGAGAAG AGC CTTCACTGC CTTGTCCTGAGTCCA YpsIP31758_2993 3372864 - 3373394 + | hypothetical protein TERM 3454 3373426 - 3373413 - f 82 -2.3 -5.72254 | overlap 3373418 TTAAACAATAAAAAA GAACC GTCT GGCCC CATGCCGACCCGTTA YpsIP31758_2994 3373550 - 3375931 + | glycosy hydrolase family protein YpsIP31758_2995 3377638 - 3376010 - | hypothetical protein YpsIP31758_2996 3377760 - 3377635 - | hypothetical protein YpsIP31758_2997 3377938 - 3377795 - | hypothetical protein YpsIP31758_2998 3378111 - 3378962 + | aldo/keto reductase family oxidoreductase TERM 3455 3379823 - 3379801 - g 78 -6.2 -4.82901 | opp_overlap 3379784 TTGTTGGCACAAAAA CCTTGGATTG TGC CAATCCCCGG GACCACAAAACTGCA YpsIP31758_2999 3378988 - 3379977 + | aldo/keto reductase family oxidoreductase TERM 3456 3380006 - 3380031 + T 100 -13.4 -3.15544 | opp_overlap 3380001 3380000 TCGCTCAAATTTCAT CTGGCTTACG ATAATC CGTAAGCCAG TTAATCCGAATAACG YpsIP31758_3000 3380925 - 3380032 - | LysR family substrate binding transcriptional regulator TERM 3457 3381046 - 3381029 - R 86 -7.7 -4.61231 | gap 1, opp_overlap 3381029 3381029, overlap 3381031 TTAGACCCCCAAAAA CGGGAAGC CCT GCT-CCCG GTATTCGATTTCAGC YpsIP31758_3001 3383051 - 3382647 - | hypothetical protein TERM 3458 3382977 - 3382957 - G 80 -7.5 -4.58236 | TACAAAAGATTAAAA GCCAGCACC AGC GGTGGTAGC GTTAATAAGGCGAAA YpsIP31758_3002 3384352 - 3383033 - | PAP2 family phosphatase YpsIP31758_3003 3386108 - 3384345 - | hypothetical protein TERM 3459 3386064 - 3386046 - G 76 -9.6 -3.64716 | opp_overlap 3386052, overlap 3386044 3386049 CCAGTGGCGAAAATA CAACGATG TTT CATCGCTG GCGGTGAACATGCCT TERM 3460 3386061 - 3386049 - G 70 -7.7 -3.95435 | opp_overlap 3386052, overlap 3386046 3386044 GTGGCGAAAATACAA CGATG TTT CATCG CTGGCGGTGAACATG YpsIP31758_3004 3386737 - 3386105 - | putative 1-acyl-sn-glycerol-3-phosphate acyltransferase cdsA2 3387676 - 3386747 - | phosphatidate cytidylyltransferase YpsIP31758_3006 3388265 - 3387669 - | CDP-alcohol phosphatidyltransferase family protein YpsIP31758_3007 3388456 - 3388304 - | hypothetical protein YpsIP31758_3008 3388674 - 3388498 - | hypothetical protein YpsIP31758_3009 3389115 - 3389231 + | hypothetical protein YpsIP31758_3010 3389450 - 3389788 + | hypothetical protein TERM 3461 3389851 - 3389810 - g 100 -16.1 -2.91702 | opp_overlap 3389815, overlap 3389815 AACACGATAAAATAT TAAAATGGCCGGAAGTTAA TGAT TTAGCTTCCGGCCATTTTT TATGGCTCCCTGAAT TERM 3462 3389815 - 3389846 + G 100 -18.2 -5.28176 | opp_overlap 3389810 3389815 GATAAAATATTAAAA TGGCCGGAAGTTAA TGAT TTAGCTTCCGGCCA TTTTTTATGGCTCCC TERM 3463 3389846 - 3389815 - g 100 -16 -4.58236 | opp_overlap 3389815, overlap 3389810 GATAAAATATTAAAA TGGCCGGAAGTTAA TGAT TTAGCTTCCGGCCA TTTTTTATGGCTCCC YpsIP31758_3011 3389773 - 3390420 + | hypothetical protein TERM 3464 3391193 - 3391223 + F 79 -8.3 -4.07687 | opp_overlap 3391200, overlap 3391200 CACTACCTGACCCGT TACATGACCCGTC TAAAT GGCGGGTTTTGTA TTTTAAGCGGCAACT TERM 3465 3391200 - 3391216 + F 85 -7.2 -4.89567 | opp_overlap 3391200, overlap 3391193 TGACCCGTTACATGA CCCGTC TAAAT GGCGGG TTTTGTATTTTAAGC folD 3391543 - 3392409 + | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YpsIP31758_3013 3392424 - 3392636 + | hypothetical protein TERM 3466 3392665 - 3392651 - T 83 -11.4 -3.02263 | opp_overlap 3392650 ATAGCCGTTGTAATA GCCAGC ATT GCTGGC CTATTGAACAAAAAA TERM 3467 3392682 - 3392712 + T 100 -9.1 -5.56568 | gap 1, opp_overlap 3392682 3392684, overlap 3392684 TATTGAACAAAAAAA TCGCGGTTACTGGT AAAC ACCAG-AACCGCAA TTTTTTTAGTACTAT TERM 3468 3392712 - 3392682 - T 100 -11.3 -5.8187 | gap 1, opp_overlap 3392682 3392684, overlap 3392684 TATTGAACAAAAAAA TCGCGGTTACTGGT AAAC ACCAG-AACCGCAA TTTTTTTAGTACTAT TERM 3469 3392684 - 3392710 + T 83 -11.7 -2.94304 | gap 1, opp_overlap 3392682 3392684, overlap 3392682 TTGAACAAAAAAATC GCGGTTACTGGT AAAC ACCAG-AACCGC AATTTTTTTAGTACT TERM 3470 3392710 - 3392684 - T 83 -11.7 -3.0287 | gap 1, opp_overlap 3392684 3392682, overlap 3392682 TTGAACAAAAAAATC GCGGTTACTGGT AAAC ACCAG-AACCGC AATTTTTTTAGTACT cysS 3394243 - 3392858 - | cysteinyl-tRNA synthetase TERM 3471 3393270 - 3393282 + g 71 -10.5 -2.87931 | GCGTTAGCATCAGTA CCGCG CAG CGCGG TATATAAACGCTCCA TERM 3472 3393305 - 3393291 - G 73 -7.8 -4.03413 | AGCGCGGTATATAAA CGCTCC AGT GAAGCG CGTGCCTGCTTCAGA ppiB 3394454 - 3394948 + | peptidyl-prolyl cis-trans isomerase B (rotamase B) TERM 3473 3395020 - 3395004 - g 73 -10.1 -3.14931 | opp_overlap 3394998 3395004 CTCAGCGTTCAGGAA CCGGCAA TCA CTGCCGG TTTTCTGCATTTTAT TERM 3474 3395004 - 3395020 + G 90 -9.4 -4.5538 | opp_overlap 3395004, overlap 3394998 CTCAGCGTTCAGGAA CCGGCA ATCAC TGCCGG TTTTCTGCATTTTAT TERM 3475 3395160 - 3395179 + G 74 -6.4 -4.36914 | opp_overlap 3395163, overlap 3395163 CTGAAATCACTCCAA CAACAGGG GGTG CCCTGTTA TTTTATCCACGGGAA TERM 3476 3395163 - 3395176 + G 75 -8.1 -4.30995 | opp_overlap 3395163, overlap 3395160 AAATCACTCCAACAA CAGGG GGTG CCCTG TTATTTTATCCACGG lpxH 3394959 - 3395681 + | UDP-2,3-diacylglucosamine hydrolase purE 3395977 - 3396501 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit purK 3396498 - 3397562 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 3477 3397593 - 3397569 - T 86 -9.9 -4.04491 | overlap 3397566 AAGTTATAACAAGAA GCGGGCGGC CTCTGCT GCTGCCCGC GAATAAAATCCACTA YpsIP31758_3019 3400035 - 3397606 - | efflux ABC transporter, permease protein TERM 3478 3399468 - 3399485 + g 78 -7.7 -4.38712 | gap 1 AAGTCAAACGGCTAC CCGGTTGC ACC GCA-CCGG TTTTCTCAACATCAG TERM 3479 3399813 - 3399790 - G 73 -10.2 -3.24422 | opp_overlap 3399807, overlap 3399788 3399787 CATGGTCAAAAATGA GAGTTGGCGG CTAA CCGCCAGCCC CTGCTGCTTCGCTTC YpsIP31758_3020 3400718 - 3400032 - | putative ABC transporter ATP-binding protein YbbA TERM 3480 3400896 - 3400857 - gH 76 -2.1 -5.26316 | overlap 3400858 3400867 CTATTGGATAAAAAA TGGCA-AGCCACGCCTTCG TTAC CGAAGGTG-GTCAATGCCA GTATCAGTGGAGATA YpsIP31758_3021 3400689 - 3401324 + | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 TERM 3481 3401418 - 3401389 - fH 86 -5.7 -5.26316 | gap 1, opp_overlap 3401389, overlap 3401395 3401396 TCAGGCTAGAAAAAA GGGA-AAGCGCACT AAA AGTGCGGTAATCCC TTCGCTTACCAATCA TERM 3482 3401410 - 3401396 - fH 73 -10 -3.03344 | opp_overlap 3401389, overlap 3401395 3401389 AGAAAAAAGGGAAAG CGCACT AAA AGTGCG GTAATCCCTTCGCTT YpsIP31758_3022 3401711 - 3402487 + | short chain dehydrogenase TERM 3483 3402749 - 3402779 + G 73 -7.7 -4.07647 | gap 2 TCTGGCCCGTGTCGA TTGCGATGCACAACC CAT GGT-G-GCGTCGCAA TTTGGTTTACGCTCT YpsIP31758_3023 3402564 - 3403433 + | putative thioredoxin TERM 3484 3403484 - 3403506 + F 100 -13.4 -4.52703 | overlap 3403503 TACCATCATTTGCTA CTGCGCGGGG CAA TCCTGCGCAG TTTTATGCTGCTTTC YpsIP31758_3024 3403628 - 3404542 + | SPFH/band 7 family protein YpsIP31758_3025 3404545 - 3404994 + | nodulation efficiency protein D TERM 3485 3405089 - 3405044 - T 86 -10.5 -3.80114 | opp_overlap 3405047 3405051, overlap 3405048 3405051 CAGCAAGGCAGTAAA CGAACACCCCGAATCACTTAC TTTG GTAGGTGATTCGGGTGATTCA CTGATGCGGCATCAA TERM 3486 3405047 - 3405085 + T 86 -11.9 -3.09516 | gap 1, opp_overlap 3405044 3405048 3405051, overlap 3405051 CAAGGCAGTAAACGA ACACCCCGAATCACTTAC TTTG GTAGGTGATTCGGG-TGA TTCACTGATGCGGCA TERM 3487 3405084 - 3405048 - T 100 -13.2 -3.5782 | gap 1, opp_overlap 3405047 3405051, overlap 3405044 3405051 AAGGCAGTAAACGAA CACCCCGAATCACTTAC TTTG GTAGGTGATTCGG-GTG ATTCACTGATGCGGC TERM 3488 3405051 - 3405082 + T 100 -18.2 -2.76263 | opp_overlap 3405048 3405044 3405051, overlap 3405047 GCAGTAAACGAACAC CCCGAATCACTTAC TTTG GTAGGTGATTCGGG TGATTCACTGATGCG TERM 3489 3405082 - 3405051 - T 100 -16 -2.61027 | opp_overlap 3405051 3405047, overlap 3405048 3405044 GCAGTAAACGAACAC CCCGAATCACTTAC TTTG GTAGGTGATTCGGG TGATTCACTGATGCG cueR 3405580 - 3405161 - | Cu(I)-responsive transcriptional regulator TERM 3490 3405442 - 3405411 - G 75 -8 -4.28774 | gap 1, opp_overlap 3405415, overlap 3405415 TCATCCAATGTAAAA CCCAC-TTGCCGCGC CTG GCGCAGCAACGTTAG CTCTTCAATATGTTT TERM 3491 3405493 - 3405508 + g 100 -4.6 -6.13503 | overlap 3405495 CGTTATCCATGCGGA CAGGTG GCGT CACCAG TTTTTTTTCTTCATA TERM 3492 3405540 - 3405552 + g 87 -5.5 -5.40474 | AAACGAATGGCTTTG CTGGT TAA ACCGG TTTTTTTCGCGACAT TERM 3493 3405594 - 3405612 + H 82 -10.3 -3.66541 | ATTATTCCCCCTTGA CCTTCCC CTTGC GGGAAGG TTTAACCTCTATGTT TERM 3494 3406896 - 3406886 - g 87 -6.8 -5.0538 | overlap 3406887 3406888 GGTGAGCCTAAAAAA TGGC AGT GCCA CCATGGATACCTTGG YpsIP31758_3027 3405783 - 3408650 + | copper exporting ATPase TERM 3495 3408669 - 3408695 + F 100 -13.8 -3.6869 | opp_overlap 3408664 GTTCCAGTAACCTCA TGGCGCACAATA CCG TTTTGTGCGCCA TTTAGCGTTGATATC YpsIP31758_3028 3408922 - 3409731 + | GumN family protein TERM 3496 3409757 - 3409736 - f 100 -10.9 -5.57396 | ACAATCAATAAAAAA TGGCCGATA TCAC TACCGGCCA GTCAAAGAGGAATTT ybaK 3409994 - 3410473 + | hypothetical protein TERM 3497 3410554 - 3410540 - f 73 -7.2 -4.10437 | overlap 3410552 CTATGAAGGAAAGAA TGAGTT TAA AACTCA TCAGACTGCTGACAA TERM 3498 3410643 - 3410617 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 3410626, overlap 3410618 3410633 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3499 3410644 - 3410618 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 3410626, overlap 3410617 3410633 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YpsIP31758_3030 3410656 - 3410796 + | hypothetical protein YpsIP31758_3031 3410765 - 3411049 + | hypothetical protein ushA 3412808 - 3411153 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 3500 3413881 - 3413896 + G 71 -2.6 -5.00196 | TCGGTACAAAGTGCC CAGATA CACC TATTTG TTTTCTTATTTGCGG fsr 3413089 - 3414303 + | fosmidomycin resistance protein TERM 3501 3415570 - 3415581 + G 83 -7.2 -4.68908 | opp_overlap 3415569 AGTTTGGCACAAATC GGCG AGTT CGCC TTTATTTTGGCTGGG YpsIP31758_3034 3414538 - 3416229 + | putative cation:proton antiport protein TERM 3502 3416306 - 3416272 - T 100 -13.6 -5.06816 | opp_overlap 3416274 3416275, overlap 3416275 ACTCTGTAATAAAAA CAATCAGGGCCAGCTT ACT ATGCTGGCCCTGACTT ATATCCCGCGTCTAC TERM 3503 3416274 - 3416304 + T 100 -14 -3.49102 | opp_overlap 3416272 3416275, overlap 3416275 TCTGTAATAAAAACA ATCAGGGCCAGCTT ACT ATGCTGGCCCTGAC TTATATCCCGCGTCT TERM 3504 3416303 - 3416275 - T 100 -17.5 -4.63592 | opp_overlap 3416274 3416275, overlap 3416272 CTGTAATAAAAACAA TCAGGGCCAGCTT ACT ATGCTGGCCCTGA CTTATATCCCGCGTC TERM 3505 3416275 - 3416303 + T 100 -17.5 -2.6914 | opp_overlap 3416275 3416272, overlap 3416274 CTGTAATAAAAACAA TCAGGGCCAGCTT ACT ATGCTGGCCCTGA CTTATATCCCGCGTC gsk 3417630 - 3416326 - | inosine-guanosine kinase TERM 3506 3416774 - 3416763 - G 71 -7.2 -4.03413 | overlap 3416764 ATCCCGCCATATAAA GCCC GCTG GGGC CTGCGGTACATAACA TERM 3507 3417816 - 3417780 - R 76 -6.6 -4.46155 | gap 1, opp_overlap 3417785, overlap 3417785 TACAGAGCGATAAAA CAGAACGGCCAGATGAG AAAC CTCACCCAGCCGTTA-G ATAAATTCGTTTAAA TERM 3508 3417812 - 3417785 - R 100 -12 -4.03183 | opp_overlap 3417785, overlap 3417780 AGCGATAAAACAGAA CGGCCAGATGAG AAAC CTCACCCAGCCG TTAGATAAATTCGTT wzz 3418985 - 3417834 - | ferric enterobactin transport protein FepE manB1 3420406 - 3419033 - | phosphomannomutase YpsIP31758_3038 3421154 - 3420411 - | glycosyl transferase, group 2 family protein TERM 3509 3420724 - 3420703 - G 74 -4.4 -4.96848 | overlap 3420706 CGTTTCATATAAAAA GTAGGATG GGGAGG CATCCAAC CATACTTCATTTTTT TERM 3510 3420821 - 3420836 + g 71 -4.7 -4.60924 | opp_overlap 3420821 GTAAGTCACCATATA CAGCA TCACAT TGCTG TTTTTCAAAGGTTTC manC 3422563 - 3421157 - | mannose-1-phosphate guanylyltransferase fcl 3423701 - 3422736 - | GDP-L-fucose synthetase gmd 3424828 - 3423707 - | GDP-mannose 4,6-dehydratase YpsIP31758_3042 3425857 - 3424844 - | glycosyl transferase WbyK, group 1 family protein wzy 3427326 - 3426106 - | O-antigen biosynthesis protein Wxy TERM 3511 3426448 - 3426436 - G 80 -6.3 -4.67755 | ATAGTCAGGGAAAAA TGCAA GCA TTGCA GAATTATTCAGTGCG TERM 3512 3426961 - 3426943 - G 75 -6 -4.63863 | opp_overlap 3426947, overlap 3426947 GTAATAGAAAAAGAA TATAGCAC TGG GTGCTGTA ATAGAAAATATGGGA YpsIP31758_3044 3428465 - 3427323 - | putative mannosyltransferase WbyJ TERM 3513 3427385 - 3427375 - G 82 -5.4 -5.09762 | ATCGTAATATAAAAA GAAC CAG GTTC ATCATCAGTAATATA TERM 3514 3427470 - 3427482 + g 100 -4.9 -5.95286 | GGGGATTTTTAATTT TATAG CTT CTATA TTTTTTATTTTTACT YpsIP31758_3045 3429620 - 3428637 - | glycosyl transferase, group 2 family protein YpsIP31758_3046 3430974 - 3429631 - | putative O-unit flippase protein Wzx TERM 3515 3429793 - 3429755 - G 75 -7.7 -4.23758 | opp_overlap 3429743 ACGCCATATTTAAAA TGGATTGATAATATTAT AGATG AAAGTATTATCAATCCA CCAGAAAATAGCGAT wbyH 3432456 - 3431173 - | O-antigen synthesis protein WbyH prt 3433314 - 3432457 - | CDP-paratose synthetase TERM 3516 3433340 - 3433325 - R 100 -9 -6.02914 | opp_overlap 3433325 3433324 3433327 TTCATATAAAAAAAA GAGGCA GTGT TGCCTC CTTGCTCCTGTTAAA ddhC 3434664 - 3433351 - | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase ddhB 3435857 - 3434682 - | CDP-glucose 4,6-dehydratase TERM 3517 3435210 - 3435175 - GR 74 -10.4 -2.66964 | gap 1, opp_overlap 3435172, overlap 3435172 CCACCGATGACATTA CCCGCAC-GCACTGTCG CTA CGGCAGTGCCATGCTGG CCATAGTTCGCTGGA ddhA 3436533 - 3435760 - | glucose-1-phosphate cytidylyltransferase TERM 3518 3436555 - 3436570 + r 72 -6.2 -4.25256 | CTCCATTACGTATTA CTTTGA TCTC TCAAAG TTATTTTGATGGCAC ddhD 3437560 - 3436571 - | CDP-6-deoxy-delta-3,4-glucoseen reductase TERM 3519 3436996 - 3436982 - G 86 -7.8 -4.90266 | opp_overlap 3436982 TTCACGAACGAAAAA GGTCCC TTG AGGACC TTCAATTCGTAAAAG TERM 3520 3437640 - 3437628 - R 80 -2.7 -5.53288 | CTTAAGTCAAAAAAA TTCAG TGA CTAAA ATAGAAACAAAAAAG hemH 3439120 - 3438158 - | ferrochelatase TERM 3521 3439194 - 3439164 - R 100 -17 -3.59979 | opp_overlap 3439171, overlap 3439183 3439184 CCTTCTTACTTGAAA TAGCTAAGGCGGCC TTA AACCGCCTTAGCTA TAAGGCCATCCAGAA adk 3439854 - 3439210 - | adenylate kinase TERM 3522 3440068 - 3440040 - R 91 -6.8 -5.56673 | gap 1, opp_overlap 3440040 AGGTACAATAAAAAA CACCCTTG-GCAA TACG TTGAACAAGGGTG TTTTTTTATCGATTA TERM 3523 3440040 - 3440068 + r 100 -6.8 -5.66684 | gap 1, opp_overlap 3440040 AGGTACAATAAAAAA CACCCTTG-GCAA TACG TTGAACAAGGGTG TTTTTTTATCGATTA htpG 3441949 - 3440081 - | heat shock protein 90 TERM 3524 3441253 - 3441276 + g 77 -3.8 -5.02074 | CTGCTTTACCACGGG TCCACAACGC CTGA GCTTTGTTGA TTTTTTCCCAGGTGA TERM 3525 3441757 - 3441726 - G 74 -9.6 -3.57792 | opp_overlap 3441724, overlap 3441753 TCACTCAGGGTTAAA GTACGTTTCTCTTT ATCA AAAGATAAACGCAC TCTCAGTTCGCCATC YpsIP31758_3056 3442132 - 3441974 - | hypothetical protein recR 3442752 - 3442147 - | recombination protein RecR TERM 3526 3442776 - 3442807 + r 73 -3.6 -5.02287 | CATCTTAAAGCCTGG TGGCAATTGCATCC CATT GGATACAGAGGCCA TTTTCTCTTTTTGTG YpsIP31758_3058 3443084 - 3442752 - | hypothetical protein TERM 3527 3443011 - 3443023 + g 75 -3.4 -5.17353 | TTGGCGACTTCTTCC TGCA TCTGC TGCA TTTTTTCCTGCATCT dnaX 3445116 - 3443140 - | DNA polymerase III subunits gamma and tau TERM 3528 3443641 - 3443667 + g 76 -7.3 -4.46675 | overlap 3443631 TTGATTTTTCGCGGT CCAGCGATAAG CTTCT TTTTTCGCTGG TTTCTTCTCTTCCGT TERM 3529 3443744 - 3443785 + g 100 -10 -5.58179 | overlap 3443713 3443750 AAACGCTCCAGTGCT GAGTTTGCCGGCCGCGCT TTTCCT GGCGCCGCCGGCTCATTC TTTTTTGTTGTGGTC TERM 3530 3443750 - 3443779 + g 93 -14.2 -3.2756 | overlap 3443744 TCCAGTGCTGAGTTT GCCGGCCGCGCT TTTCCT GGCGCCGCCGGC TCATTCTTTTTTGTT TERM 3531 3445622 - 3445608 - R 75 -5.7 -4.58424 | TATGACGATATAAAA CCAGA GTTTG TCTGG CTGGAATACCTTAAC apt 3446335 - 3445772 - | adenine phosphoribosyltransferase YpsIP31758_3061 3446768 - 3446956 + | hypothetical protein TERM 3532 3447002 - 3446987 - f 76 -7.6 -4.15222 | opp_overlap 3446986 ACTTTCGTCAAGAAA GCGTTA TCAT TAACGC ATGTAGTGCCGACCA TERM 3533 3447563 - 3447549 - g 73 -7.8 -3.9777 | TCCAAGACCGAGAAA GCCAAC TGG GTCGGC AGAGTTTGTTAGTTG priC 3447155 - 3447691 + | primosomal replication protein n'' YpsIP31758_3063 3447862 - 3448017 + | hypothetical protein kefA 3451719 - 3448357 - | potassium efflux protein KefA YpsIP31758_3065 3452368 - 3452015 - | DsrE family protein acrR 3453037 - 3452381 - | DNA-binding transcriptional repressor AcrR TERM 3534 3452924 - 3452896 - G 76 -9.5 -3.74747 | overlap 3452899 TGAAGTGCCAGTAAA TAGCGCCTCGGGT TAC ACCCGCAGCGATA GCAATATCGGTAAGA TERM 3535 3452921 - 3452899 - G 72 -11.2 -2.66873 | overlap 3452896 AGTGCCAGTAAATAG CGCCTCGGGT TAC ACCCGCAGCG ATAGCAATATCGGTA TERM 3536 3453211 - 3453193 - g 78 -6 -4.77438 | ATCTATGAGCAAAAA CAGAGG GGTAATG CCTCTG GCTGCAATTCTGGTA acrA 3453182 - 3454369 + | acriflavine resistance protein A TERM 3537 3454512 - 3454473 - g 88 -12.3 -3.78775 | CTTGCGATCATGAAA TTACCAGTAGCGCAATA TCCGAC CATTGCGCCACCGGCAA TTACAATTGCCGCCA acrB 3454386 - 3457538 + | acriflavine resistance protein B TERM 3538 3457571 - 3457586 + F 100 -11.8 -5.1356 | opp_overlap 3457571 TCATTTCATACTAAA GGCCGC GCAA GCGGCC TTTTTATTGCTGAGC TERM 3539 3457586 - 3457571 - f 100 -11.8 -3.83998 | opp_overlap 3457571 TCATTTCATACTAAA GGCCGC GCAA GCGGCC TTTTTATTGCTGAGC YpsIP31758_3069 3457724 - 3457984 + | 50S ribosomal protein L31 type B rpmJ 3458000 - 3458143 + | 50S ribosomal protein L36 TERM 3540 3458236 - 3458264 + F 76 -6.7 -4.5287 | gap 1, opp_overlap 3458236, overlap 3458231 CATCAGTCCCCAAAA GGCCCTTTGTGC ACTAAC GC-CAACGGGCC TTTTCATTCATTTGC TERM 3541 3458264 - 3458236 - f 73 -7.4 -4.10161 | gap 1, opp_overlap 3458236 3458231 CATCAGTCCCCAAAA GGCCCTTTGTGCA CTAA CGC-CAACGGGCC TTTTCATTCATTTGC TERM 3542 3459203 - 3459193 - g 75 -5.4 -4.8048 | overlap 3459177 3459178 TCTTGAGATTAAAAA TCTC AAA GAGA ACCAGTATTCAATGA YpsIP31758_3071 3459017 - 3459370 + | hypothetical protein YpsIP31758_3072 3459529 - 3459897 + | hypothetical protein YpsIP31758_3073 3459946 - 3460149 + | hemolysin expression-modulating protein TERM 3543 3460485 - 3460469 - f 76 -6.6 -4.46652 | TAAATAAAAATCAAA CCATTC GTTCA GAATGG GAGGAATCTTATTTT TERM 3544 3460555 - 3460544 - f 79 -3 -5.27335 | TGCCGGAAATAAAAA TCTA CTGA TAGA GAGCGTTCACGACAA YpsIP31758_3074 3460881 - 3461444 + | methylated-DNA-[protein]-cysteine S-methyltransferase family protein YpsIP31758_3075 3462101 - 3461580 - | putative lipoprotein TERM 3545 3462522 - 3462506 - g 74 -6.5 -4.41616 | ATGCTGCGAAACAAA CCGTCCC CGC AGAACGG ACTGTTCACTCATTT tesB 3462358 - 3463218 + | acyl-CoA thioesterase II TERM 3546 3463269 - 3463314 + T 72 -7.5 -4.04089 | opp_overlap 3463274 3463276 3463279 3463281, overlap 3463277 3463279 CAGTTGATGAATCAA TGAAATAGCACAGGGGCGATG TCAC CATCGCCCCTGTAGTTCATCA TTATTATGTATTTTT TERM 3547 3463309 - 3463274 - T 100 -12.6 -4.01419 | opp_overlap 3463269 3463277 3463279, overlap 3463276 3463279 3463281 GATGAATCAATGAAA TAGCACAGGGGCGATG TCAC CATCGCCCCTGTAGTT CATCATTATTATGTA TERM 3548 3463307 - 3463276 - T 100 -15.2 -3.59031 | opp_overlap 3463269 3463277 3463279, overlap 3463274 3463279 3463281 TGAATCAATGAAATA GCACAGGGGCGATG TCAC CATCGCCCCTGTAG TTCATCATTATTATG TERM 3549 3463277 - 3463307 + T 100 -16.3 -3.34242 | gap 1, opp_overlap 3463276 3463274 3463279 3463281, overlap 3463269 3463279 GAATCAATGAAATAG C-ACAGGGGCGATG TCAC CATCGCCCCTGTAG TTCATCATTATTATG TERM 3550 3463279 - 3463304 + T 100 -19.1 -2.8293 | opp_overlap 3463276 3463274 3463279 3463281, overlap 3463277 3463269 ATCAATGAAATAGCA CAGGGGCGATG TCAC CATCGCCCCTG TAGTTCATCATTATT TERM 3551 3463304 - 3463279 - T 100 -19.1 -2.906 | opp_overlap 3463279 3463277 3463269, overlap 3463276 3463274 3463281 ATCAATGAAATAGCA CAGGGGCGATG TCAC CATCGCCCCTG TAGTTCATCATTATT TERM 3552 3463302 - 3463281 - T 100 -15.9 -2.9955 | opp_overlap 3463279 3463277 3463269, overlap 3463279 3463276 3463274 CAATGAAATAGCACA GGGGCGATG TCAC CATCGCCCC TGTAGTTCATCATTA amt 3464770 - 3463478 - | ammonium transporter glnK 3465145 - 3464807 - | nitrogen regulatory protein P-II 2 TERM 3553 3464939 - 3464964 + g 74 -4.1 -5.00138 | gap 1 AATCACTTCGTCTAA TTGATCATCGGC GAT GGCGAT-ATCAA TTTTTACTTTGGGTA TERM 3554 3465571 - 3465550 - R 100 -13.7 -4.22554 | TGAGTCAATAAATAA CGTGGGGCG ACAT CACCCCACG CGTGCTGCTTAACTC mdlB 3467403 - 3465580 - | putative multidrug transporter membrane\ATP-binding components TERM 3555 3465814 - 3465829 + g 75 -3.2 -5.0538 | opp_overlap 3465816 3465817, overlap 3465816 AAGGCGATGAGCAAT AACCAC CAGC GTGGTA TTTTTTCGAATCACC mdlA 3469162 - 3467396 - | putative multidrug transporter membrane\ATP-binding components TERM 3556 3468550 - 3468569 + g 86 -12.2 -3.61398 | opp_overlap 3468546 TCATGCGAATACTGG TCAGGCTC TCTT GAGCCTGA TTATTAAGCAAAGAA YpsIP31758_3081 3469725 - 3469264 - | AsnC family transcriptional regulator TERM 3557 3470204 - 3470215 + G 72 -5.8 -4.43844 | opp_overlap 3470192, overlap 3470197 AATCACCTTCTACGG TGGC CGTT GCCA TTTTGTCGATCATGC YpsIP31758_3082 3469851 - 3470891 + | pyridoxal-phosphate dependent enzyme TERM 3558 3471051 - 3471015 - T 100 -10.3 -4.74013 | TTCAAAGAGATAAAA GCGGTTTGTCAGC TAGGCATGAAC ACTGACAAACCGC CTACGGAAGAAAAAA TERM 3559 3471083 - 3471068 - T 100 -6.1 -5.8187 | TACGGAAGAAAAAAA CCGGA TGGTTC TCCGG CTGGCTAATAGCTAT YpsIP31758_3083 3471924 - 3471103 - | HAD family hydrolase TERM 3560 3473539 - 3473521 - g 76 -2.4 -5.19212 | overlap 3473522 ACCAGCAGCAAAAAA CGCTGA CCTTCAT TCAGCA GATAGAAAGCGCGCC YpsIP31758_3084 3472029 - 3473732 + | putative ABC transporter, periplasmic binding protein queC 3474029 - 3474727 + | queuosine biosynthesis protein QueC YpsIP31758_3086 3475220 - 3474813 - | thioesterase family protein TERM 3561 3475453 - 3475410 - R 83 -8.8 -4.08945 | gap 1, opp_overlap 3475441 3475442 ATTATGTTGGTAAAA GCCGCCAGACCAATACCTACC GAT GGCCAGCACC-GCCTGGCGGC TTGATTTACCAACTT YpsIP31758_3087 3476020 - 3475574 - | putative competence protein ComEA TERM 3562 3476102 - 3476125 + r 100 -15.4 -4.68384 | opp_overlap 3476106, overlap 3476106 AGATCACAGATATGC GAAAGGTCGC CAAA GCGACCTTTC TTTTATTACATCGGT TERM 3563 3476121 - 3476106 - R 82 -10.4 -3.66139 | opp_overlap 3476102 3476106 CACAGATATGCGAAA GGTCGC CAAA GCGACC TTTCTTTTATTACAT TERM 3564 3476106 - 3476121 + r 100 -10.4 -4.88795 | opp_overlap 3476106, overlap 3476102 CACAGATATGCGAAA GGTCGC CAAA GCGACC TTTCTTTTATTACAT YpsIP31758_3088 3478046 - 3476160 - | peptidyl-prolyl cis-trans isomerase (rotamase D) TERM 3565 3476893 - 3476903 + g 73 -4.6 -4.81083 | opp_overlap 3476890 TGTAGCGCATAATAA GCGT CAA GCGC TTTTTCCTGCTTAAG TERM 3566 3478243 - 3478262 + r 70 -9.3 -2.81609 | opp_overlap 3478243, overlap 3478242 3478256 CTAAGCGAAAAAAAA GCGCATC ATAAAC GATGCGC CTTGTATCTTACCTT TERM 3567 3478262 - 3478243 - R 100 -10 -5.86332 | opp_overlap 3478242 3478243 3478256 CTAAGCGAAAAAAAA GCGCATCA TAAA CGATGCGC CTTGTATCTTACCTT hupB 3478619 - 3478347 - | transcriptional regulator HU subunit beta TERM 3568 3478803 - 3478776 - R 72 -6.3 -4.25873 | opp_overlap 3478776 GCGGCACAAAAAATA GCTGGCAAGCA GGATTT CACTTACCAGC ATTAGTTTTATCAAT lon 3481191 - 3478837 - | DNA-binding ATP-dependent protease La TERM 3569 3479937 - 3479955 + g 73 -7.4 -4.20712 | opp_overlap 3479937 3479935, overlap 3479931 CATCCAATAGGAAGA GTGGGTTT TTC ACACCCAC TTTTGCCATCTTCTG TERM 3570 3480739 - 3480749 + g 91 -3.2 -5.83226 | opp_overlap 3480731 CAGCGAAGCCAGCAC TTCC GGC GGGA TTTTTTTGTTCAGTT TERM 3571 3481248 - 3481234 - R 72 -10 -2.7752 | opp_overlap 3481234, overlap 3481233 CAGATTACTGGAAAT CTCGTG AAA CACGAG TCATCACGAGTTTCA TERM 3572 3481352 - 3481334 - R 100 -13.2 -4.91852 | opp_overlap 3481334 GCGAGGAAAAAGAAA TGGGGGAT AAA ATCCCCCA TTGTCATACTAACTG TERM 3573 3481334 - 3481352 + r 100 -13.2 -3.44527 | opp_overlap 3481334 GCGAGGAAAAAGAAA TGGGGGAT AAA ATCCCCCA TTGTCATACTAACTG clpX 3482657 - 3481386 - | ATP-dependent protease ATP-binding subunit clpP 3483486 - 3482863 - | ATP-dependent Clp protease proteolytic subunit TERM 3574 3483314 - 3483301 - G 77 -6.7 -4.56597 | opp_overlap 3483301 CTCGGCTTCCAAAAA CAGCA TCTG TGCTG TGATTAGGTTAGCCA TERM 3575 3483893 - 3483868 - R 100 -11.1 -5.50723 | opp_overlap 3483868 TTACCAAAAGAAAAA GCCCGTGACCA ATAA TGGCGACGGGC TTAATCAATCAAAAT TERM 3576 3483930 - 3483908 - R 95 -9.2 -4.4959 | overlap 3483910 CTTAATCAATCAAAA TACTGAATGG GTC CCATCCAGCA TCATGCGCTGAAAAA TERM 3577 3483928 - 3483910 - R 81 -9.6 -3.85043 | overlap 3483908 TAATCAATCAAAATA CTGAATGG GTC CCATCCAG CATCATGCGCTGAAA tig 3485252 - 3483948 - | trigger factor TERM 3578 3485602 - 3485577 - R 91 -10.5 -4.12532 | opp_overlap 3485583, overlap 3485579 3485583 TCGCCTATACAGAAA CACAAACGGCC CTAG AGCCGTTTGTA AAATTCTCATCTACT TERM 3579 3485600 - 3485579 - R 84 -10.9 -3.65996 | opp_overlap 3485583, overlap 3485577 3485583 GCCTATACAGAAACA CAAACGGCC CTAG AGCCGTTTG TAAAATTCTCATCTA TERM 3580 3485596 - 3485583 - R 73 -5.9 -4.44187 | opp_overlap 3485583, overlap 3485579 3485577 ATACAGAAACACAAA CGGCC CTAG AGCCG TTTGTAAAATTCTCA bolA 3485989 - 3485669 - | transcriptional regulator BolA YpsIP31758_3095 3486338 - 3486916 + | hypothetical protein TERM 3581 3487020 - 3486992 - f 73 -8.2 -3.65991 | gap 1, opp_overlap 3486990 AGTTGCTCAACAGAA TGCTCTGCC-CGA TACC TTGCGGCAGAGCA GGTAGATTTATTATG TERM 3582 3487239 - 3487257 + G 75 -5.9 -4.58395 | overlap 3487242 TTGGTCCCCGCTGAT GGACCGC TACAC GCCGTCC TTTTTAGGGCGTCGG TERM 3583 3488161 - 3488179 + G 71 -3 -4.91194 | overlap 3488163 GCCGGTTGGTTTGTA GAGGCC CATGGCT GGCCAC TTTTCTATTTATTCT YpsIP31758_3096 3487033 - 3488511 + | muropeptide transporter TERM 3584 3488534 - 3488561 + F 86 -3.4 -5.59879 | CATAAGTGACATAAA GCCGGTGC TGTTCAGTTTGT GCACTGGC TTTTTTGTGTTTATC TERM 3585 3488649 - 3488663 + F 85 -2.1 -5.75342 | TAAATCACAACTTTT CATGT TTGTT GCATG TTTTTTTTAAAAAAA YpsIP31758_3097 3488803 - 3489570 + | hypothetical protein TERM 3586 3489617 - 3489582 - f 72 -7.1 -4.04295 | opp_overlap 3489582 3489583 3489585, overlap 3489585 CTAACTATAACTAAA TGATTCCGAGGTG-CCT ATTT AGGACACCTCGAAAT-A TATTTTAATTTACCT TERM 3587 3489615 - 3489585 - f 83 -11.3 -3.05266 | gap 1, opp_overlap 3489585 3489583 3489582, overlap 3489582 ACTATAACTAAATGA TTCCGAGGTG-CCT ATTT AGGACACCTCGAAA TATATTTTAATTTAC TERM 3588 3489585 - 3489615 + F 73 -9.1 -3.51998 | gap 1, opp_overlap 3489582 3489585, overlap 3489583 3489582 ACTATAACTAAATGA TTCCGAGGTG-CCT ATTT AGGACACCTCGAAA TATATTTTAATTTAC TERM 3589 3489812 - 3489797 - f 80 -9 -3.95674 | AAAATTGCCAAATAA GGTCAC ATCT GTGACC CCCTTAACATAAAGT TERM 3590 3490827 - 3490812 - g 74 -2.6 -5.09173 | gap 1, overlap 3490803 3490800 3490823 GAACATGCCAAAAAA TGGCCAT GAC AT-GCCA AAAGGCATGGATATG cyoA 3489940 - 3490896 + | cytochrome o ubiquinol oxidase subunit II cyoB 3490901 - 3492892 + | cytochrome o ubiquinol oxidase, subunit I TERM 3591 3492945 - 3492905 - g 82 -12 -3.17714 | gap 2, overlap 3492911 3492915 TGAAACTCTGACTAA CCACAACGT-A-GCCCATGC AGA GCATGGGCATCACGATGCGG GAGCGACGAAAGTAT TERM 3592 3492939 - 3492911 - g 71 -9 -3.54029 | gap 2, overlap 3492905 3492915 TCTGACTAACCACAA CGT-A-GCCCATGC AGA GCATGGGCATCACG ATGCGGGAGCGACGA TERM 3593 3492933 - 3492915 - g 90 -14.6 -2.63614 | overlap 3492911 3492905 ACTAACCACAACGTA GCCCATGC AGA GCATGGGC ATCACGATGCGGGAG TERM 3594 3493183 - 3493170 - g 71 -6.7 -4.15854 | AAAGGGAGTGTAAAA CAGGT CAAT ACCTG GTTGGGCTTCACCTT cyoC 3492882 - 3493496 + | cytochrome o ubiquinol oxidase subunit III cyoD 3493496 - 3493828 + | cytochrome o ubiquinol oxidase subunit IV cyoE 3493842 - 3494729 + | protoheme IX farnesyltransferase TERM 3595 3494798 - 3494760 - f 100 -11 -4.48299 | opp_overlap 3494764, overlap 3494764 TGAGAGTGAAATAAA TCAAGTGGCTGGCAGGAA TCG CTCTTGCCAGCCACTTTG TATTTGTTCCCTGTT TERM 3596 3494764 - 3494794 + F 100 -17.7 -4.46072 | opp_overlap 3494760 3494764 AGTGAAATAAATCAA GTGGCTGGCAGGA ATCGC TCTTGCCAGCCAC TTTGTATTTGTTCCC TERM 3597 3494794 - 3494764 - f 100 -16.2 -3.76486 | opp_overlap 3494764, overlap 3494760 AGTGAAATAAATCAA GTGGCTGGCAGGAA TCG CTCTTGCCAGCCAC TTTGTATTTGTTCCC YpsIP31758_3103 3495213 - 3496577 + | major facilitator transporter TERM 3598 3496640 - 3496603 - Tf 76 -7.7 -4.13014 | opp_overlap 3496607, overlap 3496607 TTTATAGGGCCAAAA TTAAGGGGCAAAGACAT GAAA AAGCCGTTGCCCCTTTA GTCGTTATACCGTTT TERM 3599 3496636 - 3496607 - Tf 73 -8.5 -3.67622 | opp_overlap 3496607, overlap 3496603 TAGGGCCAAAATTAA GGGGCAAAGACAT GAAA AAGCCGTTGCCCC TTTAGTCGTTATACC YpsIP31758_3104 3497192 - 3496701 - | nucleotide-binding protein YpsIP31758_3105 3497176 - 3497298 + | hypothetical protein panE 3497424 - 3498335 + | 2-dehydropantoate 2-reductase TERM 3600 3498868 - 3498839 - gT 76 -7.9 -4.19974 | gap 1, opp_overlap 3498840, overlap 3498840 AAAAGGCGGAAGAAA TTGCCTGGCAGCTA GTG TTGCCGCCAGG-AA TTTATAATTATCGGG TERM 3601 3498840 - 3498868 + GT 73 -7.3 -4.1021 | opp_overlap 3498839 3498840 AAAGGCGGAAGAAAT TGCCTGGCAGCTA GTG TTGCCGCCAGGAA TTTATAATTATCGGG TERM 3602 3498868 - 3498840 - gT 72 -9.5 -3.109 | opp_overlap 3498840, overlap 3498839 AAAGGCGGAAGAAAT TGCCTGGCAGCTA GTG TTGCCGCCAGGAA TTTATAATTATCGGG YpsIP31758_3107 3498298 - 3498888 + | hypothetical protein thiI 3500407 - 3498956 - | thiamine biosynthesis protein ThiI YpsIP31758_3109 3500675 - 3500505 - | hypothetical protein TERM 3603 3500803 - 3500785 - g 73 -8.2 -3.96148 | CCGCTTCACCAGAAA TCAAAGCC GCC AGCTTTGA AACATCACTCAGTGA xseB 3500757 - 3501011 + | exodeoxyribonuclease VII small subunit TERM 3604 3501372 - 3501399 + G 81 -6.2 -4.90471 | gap 1 GGCCCACGCTATTTT GGCCGGTG-ATGC ACT GCAAACGCTGGCC TTTTCTATTTTGGCT ispA 3501016 - 3501936 + | geranyltranstransferase dxs 3502108 - 3503967 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3605 3504069 - 3504040 - T 100 -12.3 -4.13973 | opp_overlap 3504044, overlap 3504044 AGATATCAGAAACAA TAAAGGCATAGCC CGTG GGTTATGCCTTTA CGTGATAGTCTCTCT TERM 3606 3504044 - 3504065 + T 84 -10.9 -3.6959 | opp_overlap 3504040 3504044 ATCAGAAACAATAAA GGCATAGCC CGTG GGTTATGCC TTTACGTGATAGTCT TERM 3607 3504065 - 3504044 - T 100 -8.7 -4.63952 | opp_overlap 3504044, overlap 3504040 ATCAGAAACAATAAA GGCATAGCC CGTG GGTTATGCC TTTACGTGATAGTCT YpsIP31758_3113 3504593 - 3504108 - | phosphatidylglycerophosphatase A thiL 3505575 - 3504586 - | thiamine monophosphate kinase TERM 3608 3505604 - 3505638 + r 100 -21.8 -2.84059 | opp_overlap 3505606 3505610, overlap 3505606 3505610 AAATGTTAACTGATA TATAAATTAAGGCCGG ATA CCGGCCTTAATTTATA TCGTTAATGTATATC TERM 3609 3505606 - 3505636 + r 100 -20 -2.96235 | opp_overlap 3505606 3505610, overlap 3505604 3505610 ATGTTAACTGATATA TAAATTAAGGCCGG ATA CCGGCCTTAATTTA TATCGTTAATGTATA TERM 3610 3505636 - 3505606 - R 100 -20 -2.95091 | opp_overlap 3505606 3505604 3505610, overlap 3505610 ATGTTAACTGATATA TAAATTAAGGCCGG ATA CCGGCCTTAATTTA TATCGTTAATGTATA TERM 3611 3505632 - 3505610 - R 100 -16.4 -4.15061 | opp_overlap 3505606 3505604 3505610, overlap 3505606 TAACTGATATATAAA TTAAGGCCGG ATA CCGGCCTTAA TTTATATCGTTAATG TERM 3612 3505610 - 3505632 + r 100 -16.4 -4.14541 | opp_overlap 3505610 3505606, overlap 3505606 3505604 TAACTGATATATAAA TTAAGGCCGG ATA CCGGCCTTAA TTTATATCGTTAATG nusB 3506232 - 3505816 - | transcription antitermination protein NusB TERM 3613 3506070 - 3506030 - G 73 -3.3 -4.88918 | opp_overlap 3506042, overlap 3506032 TGACGGGAAAGAAAA GGTGCCATTAATGCATC CAGAGAT GCTGCATTAACCGCAAC CCCTGACAGCAATTC TERM 3614 3506142 - 3506158 + g 73 -5.1 -4.57569 | opp_overlap 3506145, overlap 3506145 ACAGGAACTGTAATT CAACATC AGC GATGTCG TTTTTAGACAACTGC ribH 3506723 - 3506253 - | riboflavin synthase subunit beta ribD 3507968 - 3506859 - | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase nrdR 3508549 - 3508100 - | transcriptional regulator NrdR YpsIP31758_3119 3509942 - 3508620 - | hypothetical protein TERM 3615 3508757 - 3508771 + g 83 -8.6 -4.54608 | CTTTGATGCTCGCAT CCAGTA ATT TACTGG TTTCTGTTTCTTTTA TERM 3616 3509168 - 3509150 - G 79 -11.8 -3.26807 | opp_overlap 3509148, overlap 3509148 ATGATTTAAAAACCA CAGACTGA TTT TCAGTCTG ACTCTCTATCGTTCG TERM 3617 3509420 - 3509437 + g 71 -6.3 -4.13945 | opp_overlap 3509422, overlap 3509405 GGGATCGCTGCAACT TAGCGGA TTCC TTCGCTA TTTTCGGGTAAGCCT TERM 3618 3510137 - 3510160 + r 76 -11.1 -2.51045 | opp_overlap 3510137, overlap 3510136 3510134 3510132 TTGCTGATAAAAAAA CCCTGAAAC CAACAA GTTTCAGGG CTATCTTATACATCG TERM 3619 3510160 - 3510137 - R 100 -11.8 -5.60993 | opp_overlap 3510137 3510136 3510134 3510132 TTGCTGATAAAAAAA CCCTGAAACC AACA AGTTTCAGGG CTATCTTATACATCG secF 3511163 - 3510195 - | preprotein translocase subunit SecF secD 3513021 - 3511174 - | preprotein translocase subunit SecD TERM 3620 3512882 - 3512912 + g 77 -10.5 -3.53091 | gap 1 TGGACCAGCGTTGTC TCACTGGCG-GCGA TTCC TCGCGCACCAGTGA TTTGAACAGCCGGAT yajC 3513384 - 3513049 - | preprotein translocase subunit YajC TERM 3621 3513310 - 3513328 + g 79 -9.6 -3.90112 | opp_overlap 3513300 TACTACCAGCATGAT CAGCATGG AGG TCATGCTG TTTCCTTGAGCCGGA tgt 3514620 - 3513496 - | queuine tRNA-ribosyltransferase TERM 3622 3514132 - 3514105 - G 74 -9.1 -3.74872 | gap 1, opp_overlap 3514099 ATTCAGCTCATCAAA GCGCTG-GCGGC TACGG GCAGCCCAGCGC AGTGACATTTCCATC TERM 3623 3514588 - 3514567 - G 71 -9.3 -3.57462 | opp_overlap 3514581, overlap 3514537 CACGCCACGCTCAAA CACCAGCCG ACCA CGGCGGGCG CGCCCATCAGTTTTT TERM 3624 3514629 - 3514655 + r 81 -7.4 -4.68593 | ACTTCACATAACCTC CAGCATCAGA GAAACAG TCTGATGTTG TTTTTGCCTGATCAC queA 3515783 - 3514713 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase acpH 3515986 - 3516567 + | acyl carrier protein phosphodiesterase TERM 3625 3516784 - 3516774 - f 73 -5.4 -4.67641 | ACTGCAAAACTAAAA TCGT TTA ACGA TAGGCAAAAACTATC YpsIP31758_3126 3516906 - 3517508 + | anti-oxidant AhpCTSA family protein TERM 3626 3517549 - 3517572 + F 100 -12.5 -5.24129 | opp_overlap 3517549 CTCGGGGGCTATCAA GCCAGTCAG TTCACT CTGACTGGC TTTTTTGTGCCCAGA TERM 3627 3517572 - 3517549 - f 93 -12.5 -3.14132 | opp_overlap 3517549 CTCGGGGGCTATCAA GCCAGTCAG TTCACT CTGACTGGC TTTTTTGTGCCCAGA TERM 3628 3517591 - 3517609 + F 100 -16 -3.07307 | opp_overlap 3517591 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3629 3517609 - 3517591 - f 100 -16 -4.36914 | opp_overlap 3517591 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YpsIP31758_3127 3517671 - 3518180 + | IS1541, transposase TERM 3630 3518254 - 3518286 + F 100 -11.3 -4.14739 | opp_overlap 3518261, overlap 3518258 3518260 3518261 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTCCCCTAGATAC TERM 3631 3518258 - 3518282 + F 100 -9.9 -4.67048 | opp_overlap 3518261, overlap 3518254 3518260 3518261 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTCCCCTAG TERM 3632 3518260 - 3518280 + F 100 -12.5 -3.94471 | opp_overlap 3518261, overlap 3518258 3518254 3518261 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTCCCCT TERM 3633 3518261 - 3518279 + F 100 -16 -2.95598 | opp_overlap 3518261, overlap 3518260 3518258 3518254 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTCCCC TERM 3634 3518279 - 3518261 - f 100 -16 -4.8048 | opp_overlap 3518261 3518260 3518258 3518254 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTCCCC TERM 3635 3520343 - 3520355 + G 71 -10.5 -2.76468 | overlap 3520340 CCAATGATGTCCGTC GCCCC GCA GGGGC TGCTATTGGCTACTA ggt 3518608 - 3520371 + | gamma-glutamyltransferase TERM 3636 3520548 - 3520577 + G 85 -12.3 -3.35813 | opp_overlap 3520548 3520547 3520550 AGTATCTGAAAATAT TATCCCCTATCGA ACTA TTGATGGGGGATA TTCATTAGAGTGGAG YpsIP31758_3130 3520507 - 3520641 + | hypothetical protein YpsIP31758_3129 3521297 - 3520617 - | short chain dehydrogenase TERM 3637 3521415 - 3521380 - R 80 -4.7 -5.09225 | opp_overlap 3521380 3521384 ACTGGAGCGAAAAAA CAGCTCAGTTATCAC TGAATT GTTATCCCTGAGCTG CTCTAGTGAGTTATC malZ 3523281 - 3521452 - | maltodextrin glucosidase TERM 3638 3522937 - 3522921 - G 77 -2.9 -5.26918 | overlap 3522922 AGATCTGATAAAAAA CTTGGTC CGC GACCCAA TCAGGCCCGCTATCG TERM 3639 3523833 - 3523807 - R 100 -6.5 -5.85244 | opp_overlap 3523807 AATTAAAAGAAAAAA GCCGGGACAGA TGAAC TGTACCCCGGC TTTGTATCGATTATC proY 3525253 - 3523859 - | putative proline-specific permease TERM 3640 3524454 - 3524437 - G 78 -11.3 -3.36492 | opp_overlap 3524430, overlap 3524441 GCTGGAAGGTCAGAA CGAACGG ACTA CCGTTCG TGCCCACTTGATTCC TERM 3641 3525304 - 3525284 - R 100 -11.1 -4.72272 | overlap 3525262 TTTTTTCAGCAAAAA GCCACGGAT ATT AACCGTGGC TAAAAATACTCTATT brnQ 3526648 - 3525329 - | branched-chain amino acid transport system II carrier protein YpsIP31758_3134 3528168 - 3527122 - | phosphate-binding protein TERM 3642 3527364 - 3527382 + g 79 -11 -3.54307 | CAAAATCTTGCCCAC TCGCTGCC AAC GGCAGTGA TTTAACACCACTGTT phoR 3529506 - 3528190 - | phosphate regulon sensor protein TERM 3643 3528270 - 3528260 - G 76 -2.4 -5.29885 | AAGGTAAAAATAAAA CGGG TAC CCAG ACCAATTTCACTCAT TERM 3644 3529178 - 3529161 - G 76 -11.3 -3.25304 | overlap 3529151 3529173 3529174 AAATATTACCATCAA CCGTGGT GATA ACCACGG CATCAGGCAGTGACT phoB 3530220 - 3529531 - | phosphate regulon transcriptional regulatory protein PhoB YpsIP31758_3137 3530369 - 3530250 - | hypothetical protein sbcD 3530488 - 3531732 + | exonuclease subunit SbcD TERM 3645 3532955 - 3532926 - g 80 -6.5 -4.81083 | overlap 3532919 3532945 CTGAATGAGCAAAAA CTATTGCAGAC CCATCAAC GCCTGCAACAG CTAGCAGACTATGCC sbcC 3531729 - 3535418 + | nuclease SbcCD, C subunit YpsIP31758_3140 3536801 - 3535887 - | fructokinase TERM 3646 3536868 - 3536850 - H 88 -9.6 -4.25104 | TTCTCGCGATCAAAA TACCCTGC TAG GCAGGATA ACTGTGATCTGGATA TERM 3647 3537119 - 3537095 - H 84 -11.3 -3.14132 | CCCTGCGTTGATTAA CTCGCGCGCTC CAG GCGCGCCCGAG CCAAGGATAACACTA rdgC 3537134 - 3538045 + | recombination associated protein TERM 3648 3538218 - 3538252 + T 74 -10 -3.08133 | opp_overlap 3538211 3538209 3538220 AAAAAGGATAGATGA TATGTCGCCCCCTCTG GCA TAGAGAGGGTGACAGA TTCGCTAACTCAATA TERM 3649 3538250 - 3538220 - T 86 -11.9 -2.91086 | opp_overlap 3538218, overlap 3538211 3538209 AAAGGATAGATGATA TGTCGCCCCCTCT GGCAT AGAGAGGGTGACA GATTCGCTAACTCAA YpsIP31758_3142 3538561 - 3538274 - | hypothetical protein aroL 3539582 - 3539058 - | shikimate kinase II TERM 3650 3539657 - 3539637 - R 75 -3.2 -5.21709 | opp_overlap 3539654 TTCGACATCAAAAAA CCGACC GTTATTATT GGCCGG TTGAACAGGTTTACT YpsIP31758_3144 3540386 - 3539829 - | putative methyltransferase TERM 3651 3540083 - 3540107 + g 71 -6.4 -4.21194 | opp_overlap 3540083, overlap 3540074 ACTGCTCCGCAGAAC GATCTGCGAT CTGTA AACGCGGATC TTTTAGCTGGTGCAA YpsIP31758_3145 3541731 - 3541117 - | hypothetical protein TERM 3652 3541600 - 3541614 + gr 80 -2.8 -5.39721 | CAGCCCTTGTTGTAT CTCAAT ATT AGTGAG TTTTTTATCTGCTGC YpsIP31758_3146 3541826 - 3541695 - | hypothetical protein YpsIP31758_3147 3542138 - 3541884 - | hypothetical protein YpsIP31758_3148 3543085 - 3542336 - | pilZ family protein TERM 3653 3543311 - 3543338 + r 84 -10 -3.75863 | gap 1, opp_overlap 3543311, overlap 3543335 TGATTTGAAAAAAAA GCGATAT-TGGCA AAT TGCCACATGTCGC TTTACTAGCGATTTT TERM 3654 3543338 - 3543311 - R 100 -7.8 -5.78622 | gap 1, opp_overlap 3543311 3543335 TGATTTGAAAAAAAA GCGATAT-TGGCA AAT TGCCACATGTCGC TTTACTAGCGATTTT TERM 3655 3543335 - 3543349 + r 78 -5.7 -4.7497 | opp_overlap 3543311, overlap 3543311 GCAAATTGCCACATG TCGCT TTACT AGCGA TTTTTAATCAATCAG proA 3544681 - 3543422 - | gamma-glutamyl phosphate reductase proB 3545794 - 3544691 - | gamma-glutamyl kinase TERM 3656 3545915 - 3545885 - R 78 -9.1 -3.83205 | AGGCTTGATACGAAA TCACCCCCTTTAT TGTGC AGAAAGGGGGTAA TGGGGACAGTTTATG crl 3546372 - 3545971 - | DNA-binding transcriptional regulator Crl yafA 3547679 - 3546432 - | fermentation/respiration switch protein TERM 3657 3547794 - 3547765 - R 100 -9.3 -4.69326 | overlap 3547770 ATACTGAAGAGAAAA TGAAACGTCCGGC AGGC ACCGGACGCTTAA AGAACAGTAAATTAT TERM 3658 3547789 - 3547770 - R 100 -11.4 -4.32571 | overlap 3547765 GAAGAGAAAATGAAA CGTCCGGC AGGC ACCGGACG CTTAAAGAACAGTAA gpt 3548264 - 3547806 - | xanthine-guanine phosphoribosyltransferase TERM 3659 3548814 - 3548804 - H 75 -5.4 -4.89729 | overlap 3548805 TACAAAATCTAAAAA TCTC CGA GAGA AGATATCAGCAATAT TERM 3660 3549097 - 3549087 - H 74 -4.6 -4.83615 | TAGTGCTTATAAAAA CCCA TTC CGGG CGGGAGGGATGCGCA TERM 3661 3549208 - 3549194 - g 81 -5.8 -4.88258 | overlap 3549204 AAAAGGATAATAAAA TGAAAT TAC ATTTCA ATGCACAACTACATC YpsIP31758_3154 3549193 - 3550797 + | chitin binding domain-containing protein TERM 3662 3550810 - 3550834 + T 100 -15.9 -4.8622 | opp_overlap 3550792 TAATCGTCTCTATCA GCGGGTATTAT TCT ATAATACCCGC TTTTTAATTCAGAAA YpsIP31758_3155 3552167 - 3551256 - | LysR family transcriptional regulator TERM 3663 3551325 - 3551335 + g 77 -4 -5.13016 | opp_overlap 3551319 3551325, overlap 3551319 ATTATCACATAAATA GTAA GCG TTAC TTTTTACTTTTAATT TERM 3664 3552478 - 3552468 - H 70 -2.6 -4.9725 | opp_overlap 3552468 ATGCCGACACAAAAA TAAA GGA TTTA ATTCTTATTTTTCCG TERM 3665 3552892 - 3552878 - H 76 -2.8 -5.26875 | opp_overlap 3552882, overlap 3552859 3552881 3552882 TTTTCAATCAAAAAA TCAGCC TAT AGCTAA AGATAGCAATAGGTA TERM 3666 3553359 - 3553345 - H 82 -2.1 -5.65927 | gap 1 GATTTAAATAAAAAA TG-GGC TACA GCCTCA AGTAAAAACCTCATT TERM 3667 3555380 - 3555359 - g 70 -2.2 -5.00616 | overlap 3555372 GGTTTGTTCAAAAAA CCCTATCC TAACAT GGACATGG TGTCGATTGGGCCAA pepD 3554042 - 3555502 + | aminoacyl-histidine dipeptidase dinB 3556674 - 3555616 - | DNA polymerase IV TERM 3668 3556716 - 3556695 - H 71 -6.7 -4.15044 | overlap 3556698 CCCCCGCCCAACAAA CAACTGTAT AAGT ATACAGTTA AAGTAAAAGGATTCA TERM 3669 3557776 - 3557762 - g 74 -4.2 -4.8543 | overlap 3557764 3557766 GAAGTTGTAGAAAAA TACACC TTG GGTGAA GGGCGTTCTAGCGCA YpsIP31758_3158 3557045 - 3557977 + | glycerophosphoryl diester phosphodiesterase family protein TERM 3670 3558053 - 3558093 + T 100 -19.1 -3.32844 | opp_overlap 3558054 3558058, overlap 3558054 3558058 GACAATAATTAAACA ACAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTGC TTGTCAGATAAAAAA TERM 3671 3558054 - 3558092 + T 100 -22.6 -2.59564 | opp_overlap 3558054 3558058, overlap 3558053 3558058 ACAATAATTAAACAA CAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTG CTTGTCAGATAAAAA TERM 3672 3558092 - 3558054 - T 100 -22.6 -4.1648 | opp_overlap 3558054 3558053 3558058, overlap 3558058 ACAATAATTAAACAA CAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTG CTTGTCAGATAAAAA TERM 3673 3558058 - 3558088 + T 100 -17.6 -4.00124 | opp_overlap 3558054 3558058, overlap 3558054 3558053 TAATTAAACAACAAA GCCCCCGAACAATG ATG CGTCGTTCGGGGGC TTTGCTTGTCAGATA TERM 3674 3558088 - 3558058 - T 100 -17.6 -4.62669 | opp_overlap 3558058 3558054 3558053, overlap 3558054 TAATTAAACAACAAA GCCCCCGAACAATG ATG CGTCGTTCGGGGGC TTTGCTTGTCAGATA YpsIP31758_3159 3558449 - 3558222 - | hypothetical protein YpsIP31758_3160 3559499 - 3558462 - | putative thiamine biosynthesis lipoprotein apbE TERM 3675 3558824 - 3558842 + g 71 -4.4 -4.79683 | overlap 3558826 CCGCGACTGGCTTTT CAATGGCG ATA CGCCAAGG TTTATTTTCTCCATT nqrF 3560748 - 3559525 - | Na(+)-translocating NADH-quinone reductase subunit F nqrE2 3561360 - 3560764 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 3676 3561001 - 3560985 - G 72 -10.1 -3.05997 | GTGCCATAAACGACA CGCCACC AAA GATGGCG CAGTTCACGGTGATT nqrD 3561996 - 3561367 - | Na(+)-translocating NADH-quinone reductase subunit D TERM 3677 3561859 - 3561838 - G 77 -8.7 -4.27796 | overlap 3561839 GAAGAAACTCGAAAA CGCAGTCAC CAGC GTGACTGCC AGAGTCATCACTAAT TERM 3678 3561858 - 3561839 - G 82 -12.2 -3.15593 | overlap 3561838 AAGAAACTCGAAAAC GCAGTCAC CAGC GTGACTGC CAGAGTCATCACTAA nqrC 3562789 - 3561989 - | Na(+)-translocating NADH-quinone reductase subunit C nqrB 3564020 - 3562779 - | Na(+)-translocating NADH-quinone reductase subunit B nqrA 3565367 - 3564024 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 3679 3565591 - 3565607 + G 71 -6.5 -4.28049 | opp_overlap 3565586 CATTACACAAGCAGG TCACCAG CTG CGGGTGA TTTTAGCATTTTCCG YpsIP31758_3167 3565469 - 3565648 + | hypothetical protein YpsIP31758_3169 3565863 - 3566603 + | hypothetical protein YpsIP31758_3168 3567341 - 3566568 - | class II glutamine amidotransferases domain-containing protein TERM 3680 3566614 - 3566635 + g 73 -8.7 -3.91084 | opp_overlap 3566614 AATAAAGCAAATTCA CCTGGTGCA ATTT TGTGCCAGG TTTCATTACCGGTCA TERM 3681 3566901 - 3566877 - G 70 -7.8 -3.93864 | AGCAATAAAGCGAAA TACCCCAGGC CAGTT ACCGGGGGTA CGAGGGTAGCGTTTT gmhA1 3568125 - 3567544 - | phosphoheptose isomerase YpsIP31758_3171 3568365 - 3570812 + | acyl-CoA dehydrogenase TERM 3682 3570877 - 3570852 - T 93 -11.9 -3.62723 | opp_overlap 3570852, overlap 3570848 TATCGAAATAATCAA CCAAGCCTCCC ATTA AGGAGGCTTAG TTTTATGTTTAATAA TERM 3683 3570852 - 3570877 + T 100 -9 -4.82128 | opp_overlap 3570852 3570848 TATCGAAATAATCAA CCAAGCCTCC CATTAA GGAGGCTTAG TTTTATGTTTAATAA YpsIP31758_3172 3571730 - 3570984 - | hypothetical protein TERM 3684 3571482 - 3571466 - G 75 -10.1 -3.44284 | overlap 3571464 GCCCCATCAACAACA GGCGCAA ACC CTGCGCC CCGAGTAATCGCTGT TERM 3685 3571662 - 3571643 - G 73 -7.9 -4.08216 | TGATGTGCTGTAAAA TGCCGAT CGGGAT ATCGGCA ACCAAGCGATGAAGT YpsIP31758_3173 3573585 - 3571732 - | hypothetical protein YpsIP31758_3174 3579472 - 3573740 - | hemagglutination domain-containing protein TERM 3686 3577825 - 3577836 + g 76 -7.2 -4.33274 | overlap 3577824 3577833 ATGTCAGCGTCGCAT CGGC TCCC GCCG TTTTAGTGATATCGG TERM 3687 3578755 - 3578741 - G 70 -10 -3.1247 | ATGGTCCAGATTCAA GGTCAC GCT GTGACC GACTGCCAGCACAGT YpsIP31758_3175 3581303 - 3579513 - | putative lipoprotein YpsIP31758_3176 3581283 - 3581396 + | hypothetical protein TERM 3688 3581524 - 3581488 - fH 82 -2.4 -5.66989 | gap 1, overlap 3581505 TAAACACTAAAAAAA CCGTAAACTTA-GAC TAATTGCC GTCACAGGTTTACGG CAAACAGCAATTTGA YpsIP31758_3177 3581505 - 3581618 + | hypothetical protein TERM 3689 3582017 - 3582042 + T 93 -11.9 -3.62046 | overlap 3582018 TATGCTAGCTCGTAG GCTGAGCCTCA GGGA TGAGGCTCAGG TTATTGACAAAGTGC TERM 3690 3582018 - 3582041 + T 100 -15.4 -2.77013 | overlap 3582017 ATGCTAGCTCGTAGG CTGAGCCTCA GGGA TGAGGCTCAG GTTATTGACAAAGTG TERM 3691 3582115 - 3582141 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3582104, overlap 3582110 3582116 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3692 3582116 - 3582142 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3582104, overlap 3582110 3582115 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3693 3582205 - 3582220 + T 73 -9 -3.41359 | overlap 3582203 TTGTCAGCAGTCTGA GCCTCA GGGA TGAGGC TATTAATTTTGAGGC TERM 3694 3582307 - 3582297 - T 100 -8.2 -4.90869 | overlap 3582298 ACCATCAAGTAAAAA GGGG GAT CCCC AACGTCATTGGCGTT TERM 3695 3582432 - 3582422 - T 75 -2.4 -5.30155 | GCATCAAGTAAAAAA GGGG ATC CCCA ACGTCATTGGCGTTG mtnK 3583729 - 3582506 - | methylthioribose kinase TERM 3696 3583241 - 3583255 + g 74 -2.7 -5.15969 | opp_overlap 3583242, overlap 3583242 TTCCGGGTTGGTATA ACGGC TCACC GCCGC TTTTTTCGCTTGCGC YpsIP31758_3179 3583925 - 3584965 + | eIF-2B alpha/beta/delta family protein YpsIP31758_3180 3585550 - 3585008 - | ARD/ARD' family dioxygenase YpsIP31758_3181 3586364 - 3585675 - | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YpsIP31758_3182 3587029 - 3586361 - | hypothetical protein TERM 3697 3586959 - 3586970 + g 71 -7.2 -4.09685 | opp_overlap 3586947 TTACCGCCAGTCGCC GGGC ACCA GCCC TTTTCGCCGATCCAG TERM 3698 3588217 - 3588230 + G 74 -6.7 -4.38712 | overlap 3588204 TGGGCGTTGCTGCAA TACCG TTAT CGGTA TTTTGTGAAGCTCCG YpsIP31758_3183 3587169 - 3588329 + | putative aminotransferase YpsIP31758_3184 3588317 - 3589087 + | hypothetical protein YpsIP31758_3185 3590471 - 3589188 - | allantoate amidohydrolase YpsIP31758_3186 3591826 - 3590471 - | aminotransferase, class V YpsIP31758_3187 3592604 - 3591858 - | amino acid ABC transporter, ATP-binding protein YpsIP31758_3188 3593238 - 3592585 - | amino acid ABC transporter, permease protein YpsIP31758_3189 3593903 - 3593235 - | amino acid ABC transporter, permease protein YpsIP31758_3190 3594704 - 3593916 - | amino acid ABC transporter, periplasmic amino acid-binding protein YpsIP31758_3191 3596000 - 3595056 - | RpiR family transcriptional regulator TERM 3699 3595107 - 3595124 + g 76 -9.1 -3.80877 | overlap 3595105 AATTTGATGTATCCG CTGGCGG CCTT CTGCCAG TATTTTATGCAGTAA YpsIP31758_3192 3596230 - 3596072 - | hypothetical protein YpsIP31758_3193 3596199 - 3596402 + | hypothetical protein YpsIP31758_3194 3596399 - 3597796 + | amidase YpsIP31758_3195 3597825 - 3598292 + | hypothetical protein TERM 3700 3598426 - 3598410 - g 71 -9.3 -3.59979 | GGTTGTCATTCCAAA GGGGGCC TTT GGCCCTC GCTCGAAAATGCCTC YpsIP31758_3196 3598295 - 3598471 + | hypothetical protein TERM 3701 3599030 - 3599059 + G 95 -15.1 -2.91695 | overlap 3598987 3599002 3599028 CCATTTATTGGGTTG CCAGTGCCTTGAT GTTT ATCATGGCACTGG TCCTTTGGCGCTGCC YpsIP31758_3197 3598519 - 3599718 + | major facilitator transporter TERM 3702 3600217 - 3600227 + G 71 -4.6 -4.54727 | TCAGGTAAAAAAACG GCCT TAT GGGC TTTTGGTTTAACCGA YpsIP31758_3198 3599878 - 3600651 + | putative azaleucine resistance protein AzlC YpsIP31758_3199 3600648 - 3600989 + | hypothetical protein mprA 3601161 - 3601673 + | transcriptional repressor MprA TERM 3703 3602128 - 3602108 - g 85 -2.6 -5.55769 | gap 1 CCGCAGAATAAAAAA CAGCA-ACG TAAA CGTGTACTG CTGTTGCTGACGGCC emrA 3602057 - 3603229 + | multidrug resistance protein A emrB 3603268 - 3604803 + | multidrug resistance protein B TERM 3704 3604901 - 3604845 - T 100 -13.8 -3.40775 | opp_overlap 3604846 3604855 3604860 3604899, overlap 3604846 3604860 ATTTTTAGCCAAATA GCGGTCAACAAAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCGT TCTAAAACGTCTCTC TERM 3705 3604900 - 3604846 - T 100 -17.3 -2.64144 | opp_overlap 3604846 3604855 3604860 3604899, overlap 3604845 3604860 TTTTTAGCCAAATAG CGGTCAACAAAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCG TTCTAAAACGTCTCT TERM 3706 3604846 - 3604900 + T 100 -17.3 -3.3095 | opp_overlap 3604846 3604845 3604860, overlap 3604855 3604860 3604899 TTTTTAGCCAAATAG CGGTCAACAAAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCG TTCTAAAACGTCTCT TERM 3707 3604855 - 3604891 + T 100 -13.8 -4.6902 | opp_overlap 3604846 3604845 3604860, overlap 3604846 3604860 AAATAGCGGTCAACA AAAAAGGGGGCCCTGA ACTCA TCAGCGCCCCCTTTTA TTTTTACCGTTCTAA TERM 3708 3604886 - 3604860 - T 100 -13.7 -5.4505 | opp_overlap 3604855 3604846 3604860, overlap 3604846 3604845 GCGGTCAACAAAAAA GGGGGCCCTGA ACTCA TCAGCGCCCCC TTTTATTTTTACCGT TERM 3709 3604860 - 3604886 + T 100 -13.7 -5.27023 | opp_overlap 3604860 3604846 3604845, overlap 3604855 3604846 GCGGTCAACAAAAAA GGGGGCCCTGA ACTCA TCAGCGCCCCC TTTTATTTTTACCGT YpsIP31758_3203 3606123 - 3604936 - | putative methyltransferase TERM 3710 3606151 - 3606139 - H 77 -10.5 -3.14132 | opp_overlap 3606135 TGTCTTCTCCACCAA CGCGC AGG GCGCG AAGATTACCTGATGT trxC 3606375 - 3606812 + | thioredoxin 2 TERM 3711 3606937 - 3606964 + F 75 -8.6 -3.86897 | gap 1, opp_overlap 3606908 3606907, overlap 3606932 3606938 TTTTCTGTCGGGGCG TGG-GCCATTCTA TAT TAGAATGGCGCTA TTTCTCAGGAGTCCG TERM 3712 3606938 - 3606962 + F 89 -11.5 -3.5241 | opp_overlap 3606908 3606907, overlap 3606932 3606937 TTTCTGTCGGGGCGT GGGCCATTCTA TAT TAGAATGGCGC TATTTCTCAGGAGTC YpsIP31758_3205 3606982 - 3607731 + | DTW domain-containing protein YpsIP31758_3206 3607774 - 3610416 + | putative acyl-CoA synthetase pssA 3610589 - 3611947 + | phosphatidylserine synthase TERM 3713 3611979 - 3611963 - f 70 -3.6 -4.78848 | opp_overlap 3611963, overlap 3611956 GTCTTAAAGATAAAA CCCGGT GAATT AGCGGG TTTTCATCTCCCACT YpsIP31758_3208 3612009 - 3612350 + | hypothetical protein TERM 3714 3612502 - 3612522 + T 71 -8.9 -3.35798 | opp_overlap 3612502 TCGCGCACAGCAAAA CCCCACGCT TTG GGCATGGGG TTATCAATACAACGT TERM 3715 3612522 - 3612502 - T 100 -10.4 -4.34402 | opp_overlap 3612502 TCGCGCACAGCAAAA CCCCACGC TTTGG GCATGGGG TTATCAATACAACGT TERM 3716 3612589 - 3612571 - T 100 -3.8 -5.92337 | ACACAGCAAAAAAAA CCCACG TTTTTGG CATGGG GTCATCATTACAACG TERM 3717 3612629 - 3612663 + T 95 -9.2 -4.50627 | opp_overlap 3612636 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 3718 3612656 - 3612636 - T 100 -10.4 -4.8048 | opp_overlap 3612629 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 3719 3612894 - 3612884 - T 74 -6.8 -4.27316 | opp_overlap 3612884 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 3720 3614006 - 3614017 + T 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 3721 3614053 - 3614079 + T 70 -9.4 -2.75844 | opp_overlap 3614029 3614031, overlap 3614052 3614055 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 3722 3614513 - 3614531 + T 82 -10.3 -3.57798 | overlap 3614506 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 3723 3618373 - 3618356 - T 100 -12.7 -5.80727 | AAAAACAACAAAAAA GGGGCGA TTTC TCGCCCC TTAGAGGATCAGCTA clpB 3620962 - 3618389 - | protein disaggregation chaperone TERM 3724 3620336 - 3620360 + g 71 -5 -4.53777 | gap 1 AGCGGTTTTACCCAC CCCAG-GCTCA CCAA TCAGCACTGGG TTATTTTTGGTTCGA YpsIP31758_3213 3621823 - 3621092 - | hypothetical protein TERM 3725 3621386 - 3621411 + g 72 -10.4 -3.06696 | opp_overlap 3621386 3621383 AGCCATAAGAGAGGA CGGTGCCGCA TTGAAT TGCGCCACCG TGTGTTCCAGAACAC TERM 3726 3621411 - 3621386 - G 71 -10.4 -2.78793 | opp_overlap 3621386, overlap 3621383 AGCCATAAGAGAGGA CGGTGCCGCA TTGAAT TGCGCCACCG TGTGTTCCAGAACAC TERM 3727 3621787 - 3621774 - G 73 -9.5 -3.31792 | CGAGTAGTGCTACAA GCCCG GACG CGGGC AGGCATCGGCCAATC rluD 3622808 - 3621825 - | 23S rRNA pseudouridine synthase D TERM 3728 3622843 - 3622853 + H 75 -8.2 -3.8766 | AACGTTGGGTTTTGA CGGC GAT GCCG TTTAATATAATGTGC YpsIP31758_3215 3622944 - 3623675 + | outer membrane protein assembly complex subunit YfiO TERM 3729 3623724 - 3623699 - f 70 -7.5 -3.85133 | opp_overlap 3623703, overlap 3623689 3623697 3623703 CGAAAGATGAAAACA CCAACGGCAGC TCAG GCTGCCGTTTT CAATTTAGGTTTTCA TERM 3730 3623703 - 3623720 + F 100 -12.7 -4.37198 | opp_overlap 3623699 3623697 3623703 AGATGAAAACACCAA CGGCAGC TCAG GCTGCCG TTTTCAATTTAGGTT TERM 3731 3623720 - 3623703 - f 100 -12.7 -3.56568 | opp_overlap 3623703, overlap 3623699 3623697 AGATGAAAACACCAA CGGCAGC TCAG GCTGCCG TTTTCAATTTAGGTT YpsIP31758_3216 3624030 - 3624392 + | ribosomal subunit interface protein TERM 3732 3624421 - 3624436 + F 100 -11.8 -4.87291 | CTAATTTCGGTGTAA CGCGCC TTCG GGCGCG TTTTTAATTGACATC pheL 3624524 - 3624574 + | Phe operon leader peptide TERM 3733 3624641 - 3624624 - f 100 -12.7 -4.51224 | opp_overlap 3624624 AAGACGAACAAGAAA GCCTCCC AAGC GGGAGGC TTTTTTTATGTATAT TERM 3734 3624624 - 3624641 + F 100 -12.7 -5.77988 | opp_overlap 3624624 AAGACGAACAAGAAA GCCTCCC AAGC GGGAGGC TTTTTTTATGTATAT pheA 3624754 - 3625911 + | bifunctional chorismate mutase/prephenate dehydratase TERM 3735 3625985 - 3625957 - T 100 -13.2 -5.69473 | CACACCATAAAAAAA GTCATCCCGGCA GGCTG TGCTGGGATGAC CTATAAAAATCTATC tyrA 3627137 - 3626016 - | bifunctional chorismate mutase/prephenate dehydrogenase TERM 3736 3626165 - 3626151 - G 74 -10 -3.61517 | ATGGTGCTCTAACAA GGTGAG CGC CTCACC AAAGCGTTTGTAGTA aroF 3628226 - 3627150 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3737 3628133 - 3628146 + g 75 -5.3 -4.8143 | opp_overlap 3628143, overlap 3628126 3628143 ACTGATCATTTTCGC TCAGT GGAA ACTGA TTTTTCAGTTCTTCC YpsIP31758_3221 3628453 - 3629169 + | putative two-component response-regulatory protein YehT dcuB 3629602 - 3630945 + | anaerobic C4-dicarboxylate transporter YpsIP31758_3223 3631268 - 3632035 + | hypothetical protein TERM 3738 3632053 - 3632075 + T 74 -10.6 -2.69545 | opp_overlap 3632055, overlap 3632052 3632055 CACCATTCGTCTATA TAGCGTGGTG TGA TACCGCGCTA ATTCTCCTCTCTCCC TERM 3739 3632265 - 3632233 - T 100 -11.3 -4.55673 | opp_overlap 3632240, overlap 3632237 3632239 3632240 AAATAGAGCATAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3740 3632261 - 3632237 - T 100 -9.9 -4.81357 | opp_overlap 3632240, overlap 3632233 3632239 3632240 AGAGCATAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3741 3632259 - 3632239 - T 100 -12.5 -4.00842 | opp_overlap 3632240, overlap 3632237 3632233 3632240 AGCATAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3742 3632240 - 3632258 + T 100 -16 -4.8048 | opp_overlap 3632240 3632239 3632237 3632233 GCATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3743 3632258 - 3632240 - T 100 -16 -2.98878 | opp_overlap 3632240, overlap 3632239 3632237 3632233 GCATAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_3224 3632848 - 3632339 - | IS1541, transposase TERM 3744 3632928 - 3632910 - R 100 -16 -3.07307 | opp_overlap 3632910 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3745 3632910 - 3632928 + r 100 -16 -4.36914 | opp_overlap 3632910 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3746 3632947 - 3632967 + r 86 -12.6 -2.52987 | opp_overlap 3632947, overlap 3632946 TCTGGGCACAAAAAA GGGCTAGC ACATG GCTAGCCC CTTCATAAGTATTAA TERM 3747 3632967 - 3632947 - R 100 -12.6 -5.24129 | opp_overlap 3632947 3632946 TCTGGGCACAAAAAA GGGCTAGC ACATG GCTAGCCC CTTCATAAGTATTAA rplS 3633356 - 3633009 - | 50S ribosomal protein L19 trmD 3634177 - 3633437 - | tRNA (guanine-N(1)-)-methyltransferase rimM 3634764 - 3634216 - | 16S rRNA-processing protein rpsP 3635034 - 3634786 - | 30S ribosomal protein S16 TERM 3748 3635091 - 3635058 - H 100 -18.3 -4.67982 | CTTTAGTTAATAAAA CAACTGGACCCCATC GGGG AACGGGGTCCAGTTG CAATATAAAAAGCCC TERM 3749 3635155 - 3635135 - g 74 -2.6 -5.00884 | opp_overlap 3635135 ATTTTGGCGAAAAAA GCAATCTA AAGCG TAGATTCC TGTTCGCACATTTTG YpsIP31758_3229 3635089 - 3635253 + | hypothetical protein ffh 3636623 - 3635262 - | signal recognition particle protein TERM 3750 3635553 - 3635563 + g 71 -6.8 -4.26076 | opp_overlap 3635551 TTCTGGCAACTGACC TGCC CCT GGCA TTTTACTCAACATAC TERM 3751 3636163 - 3636175 + g 74 -9.1 -3.62518 | opp_overlap 3636163 AAATCAATGCCAACA CCCTG AGC CAGGG TTTCCAACTGTTTGA YpsIP31758_3231 3636789 - 3637580 + | putative cytochrome C assembly protein YpsIP31758_3232 3637676 - 3638932 + | hypothetical protein TERM 3752 3638987 - 3638970 - T 87 -4.8 -5.46657 | opp_overlap 3638970 3638965 3638972 CAGTTTAATAAAAAA GACGCT TTAATC AGCGCC TTTTATCATTCTCCT luxS 3639536 - 3639021 - | S-ribosylhomocysteinase TERM 3753 3639677 - 3639694 + r 100 -11.3 -5.55001 | TAGAGATGTTAATTT GGCCACA GTGA TGTGGCC TTTTCTTTTTTATTG gshA 3641302 - 3639704 - | glutamate--cysteine ligase YpsIP31758_3235 3641774 - 3641346 - | hypothetical protein TERM 3754 3641654 - 3641674 + g 70 -9.7 -3.16564 | opp_overlap 3641651 3641649 ATAACACCAATATCG CTGCGGG CGCACTA CCCGCAG TTAATAGGGTGACCA YpsIP31758_3236 3642337 - 3641771 - | fructose-1-phosphatase TERM 3755 3642577 - 3642562 - R 91 -8.2 -4.67635 | opp_overlap 3642562, overlap 3642554 GCCAAAAGCAGAAAA CCCCGC TATA GCGAGG TTCCTTAATATGGTG TERM 3756 3642634 - 3642649 + r 73 -9 -3.52102 | overlap 3642622 CCTCGCCCTACGGGC CGTTGC TAAA GCAACG TTGTCTCGCTACGCT TERM 3757 3642684 - 3642700 + r 76 -10.9 -2.69468 | overlap 3642677 3642681 TCGAACTTCCGACCA CTCGGTT CGT AACCGAG TACTCTATCCAGCTG TERM 3758 3643632 - 3643598 - R 100 -15 -5.27206 | opp_overlap 3643604, overlap 3643601 TAGAGACAATAAAAA GCAGTAGCGCCTCGTG TTA CACGAGACGCTGCTTC AAAATCAGTAAGTCG TERM 3759 3643629 - 3643601 - R 100 -15.3 -3.43245 | opp_overlap 3643604, overlap 3643598 AGACAATAAAAAGCA GTAGCGCCTCGTG TTA CACGAGACGCTGC TTCAAAATCAGTAAG TERM 3760 3643604 - 3643626 + r 93 -13.4 -2.72463 | opp_overlap 3643601 3643598 CAATAAAAAGCAGTA GCGCCTCGTG TTA CACGAGACGC TGCTTCAAAATCAGT csrA 3643822 - 3643637 - | carbon storage regulator TERM 3761 3644049 - 3644023 - R 100 -11.6 -5.48054 | opp_overlap 3644021 3644023 AGGAAAATTAAAAAA CGCCATACCTAG TAC CGAGATATGGCG TGTTGATTTAATAGA TERM 3762 3644023 - 3644049 + r 74 -9.4 -3.35849 | opp_overlap 3644023, overlap 3644021 AGGAAAATTAAAAAA CGCCATACCTAG TAC CGAGATATGGCG TGTTGATTTAATAGA alaS 3646699 - 3644072 - | alanyl-tRNA synthetase TERM 3763 3644769 - 3644782 + g 76 -2.3 -5.27335 | opp_overlap 3644770, overlap 3644770 TACTTCTCGCCGAAC AGTGC CATT GCACC TTTTTCTTTCGCCGC recX 3647387 - 3646839 - | recombination regulator RecX TERM 3764 3647507 - 3647517 + r 86 -6.8 -4.93968 | opp_overlap 3647496 AACACCAATTACTTT GGGT AAC ACCC TTTTTACTTGTCGCT TERM 3765 3647631 - 3647641 + r 86 -6.8 -4.93968 | opp_overlap 3647620 AACACCAATTACTTT GGGT AAC ACCC TTTTTACTTGTCGCT TERM 3766 3647755 - 3647765 + r 76 -6.8 -4.41494 | opp_overlap 3647744 AACACCAATTACTTT GGGT AAC ACCC TTTTACTTACCGCTA TERM 3767 3647878 - 3647888 + r 86 -6.8 -4.93968 | opp_overlap 3647867 AACACCAATTACTTT GGGT AAC ACCC TTTTTACTTGTCGCT TERM 3768 3647962 - 3647993 + r 100 -16 -3.73953 | opp_overlap 3647962 3647966, overlap 3647966 TGTTATTTACTCAAA CAAACAGACCGCCA CAAG TGACGGTCTGTTTG TTTACTCCAACTGGT TERM 3769 3647993 - 3647962 - R 100 -18.2 -3.6682 | opp_overlap 3647962 3647966, overlap 3647966 TGTTATTTACTCAAA CAAACAGACCGCCA CAAG TGACGGTCTGTTTG TTTACTCCAACTGGT TERM 3770 3647966 - 3647989 + r 100 -11 -4.49556 | opp_overlap 3647962 3647966, overlap 3647962 ATTTACTCAAACAAA CAGACCGCCA CAAG TGACGGTCTG TTTGTTTACTCCAAC TERM 3771 3647989 - 3647966 - R 100 -13.2 -4.46514 | opp_overlap 3647966 3647962, overlap 3647962 ATTTACTCAAACAAA CAGACCGCCA CAAG TGACGGTCTG TTTGTTTACTCCAAC recA 3649091 - 3648021 - | recombinase A TERM 3772 3648135 - 3648153 + g 77 -3.8 -5.10933 | opp_overlap 3648139, overlap 3648140 CAGTTTTTTATCTAA CTCAGC AGCAATG GCTGGG TTTTCTTTTAAATAG YpsIP31758_3241 3649694 - 3649206 - | competence damage-inducible protein A TERM 3773 3649627 - 3649637 + g 71 -6.8 -4.27465 | TCTGCGCAGGTCACC CACG CAC CGTG TTCTTTTAACTTATG TERM 3774 3649883 - 3649896 + H 70 -5.2 -4.56775 | opp_overlap 3649893 CGAATAGCGGTGAGA GGGG AGAAAA CCCC TTTTTAAAAGGGGAT TERM 3775 3649909 - 3649893 - H 100 -10.9 -4.41548 | opp_overlap 3649883 TGAGAGGGGAGAAAA CCCCTTT TTA AAAGGGG ATAAAAAATCATGAT TERM 3776 3650466 - 3650485 + G 71 -9.3 -3.59233 | overlap 3650463 AGTGGTGCTTATGTT TCAGCCC GCGCTG GGGCTGA TTACTTTAATGGTTA YpsIP31758_3242 3650011 - 3651351 + | major facilitator transporter YpsIP31758_3243 3651413 - 3651559 + | hypothetical protein YpsIP31758_3245 3651599 - 3652543 + | sugar-binding domain-containing protein YpsIP31758_3244 3652678 - 3652535 - | hypothetical protein TERM 3777 3652585 - 3652570 - G 72 -10.4 -3.0395 | opp_overlap 3652565 ACATATTGGTTAACA GCCCCA GCCA TGGGGC GGACACTTTACTCTT YpsIP31758_3246 3654189 - 3652765 - | fucose isomerase domain-containing protein TERM 3778 3654237 - 3654226 - R 73 -7.2 -4.07885 | TATTTCGGCTGAAAA CGCG CACG CGCG ATGGCCGTTTGCCAG YpsIP31758_3247 3655697 - 3654210 - | carbohydrate kinase TERM 3779 3655386 - 3655426 + g 79 -10.5 -3.66178 | gap 2, opp_overlap 3655387, overlap 3655387 GAAAGCCTCTGAACG ACGGCACTGCCAGCTTACG ACTGG CGTGAGC-GGC-GTGCCGG TTTCCCGTTCCCAAA TERM 3780 3655387 - 3655425 + g 88 -14 -2.79492 | gap 2, opp_overlap 3655387, overlap 3655386 AAAGCCTCTGAACGA CGGCACTGCCAGCTTACG ACTGG CGTGAGC-GGC-GTGCCG GTTTCCCGTTCCCAA TERM 3781 3655425 - 3655387 - G 75 -11.8 -2.7186 | gap 2, opp_overlap 3655387 3655386 AAAGCCTCTGAACGA CGGCACTGCCAGCTTACG ACTGG CGTGAGC-GGC-GTGCCG GTTTCCCGTTCCCAA YpsIP31758_3248 3656644 - 3655700 - | putative transketolase, C-terminal subunit YpsIP31758_3249 3657467 - 3656637 - | putative transketolase. N-terminal subunit TERM 3782 3656906 - 3656918 + g 77 -4.8 -5.00267 | TTGATTTAGTGGTCC CTGC CAGTT GCAG TTTATTTTTGTCGTT TERM 3783 3657104 - 3657130 + g 73 -3.7 -4.89567 | gap 1, opp_overlap 3657091, overlap 3657099 3657104 3657105 AACCGTGCCCTAAAG C-CCCGGTATTG AGTT CAATGCCTGGCG TTTTGTGTTTTACAG rbsC6 3658851 - 3657706 - | ribose ABC transporter, permease protein rbsA5 3660371 - 3658848 - | ribose ABC transporter, ATP-binding protein TERM 3784 3659308 - 3659324 + g 73 -2.1 -5.09173 | opp_overlap 3659311, overlap 3659309 CAGGCAACCGATGAG ACAGGGA AAA TCCCGGC TTTTTTGCGGTCTTC YpsIP31758_3252 3660988 - 3660371 - | putative lipoprotein TERM 3785 3661024 - 3661003 - R 89 -11.5 -3.53761 | opp_overlap 3661006, overlap 3660992 3660991 3661004 3661006 TAATGCCTCCTGAAA GGAGGGGCG ATGT CGCCCCTCA TTACGGCTAAAGCGG TERM 3786 3661023 - 3661004 - R 100 -15 -2.72043 | opp_overlap 3661006, overlap 3660992 3660991 3661003 3661006 AATGCCTCCTGAAAG GAGGGGCG ATGT CGCCCCTC ATTACGGCTAAAGCG TERM 3787 3661006 - 3661021 + r 83 -11.8 -2.72344 | opp_overlap 3660992 3660991 3661004 3661003 3661006 TGCCTCCTGAAAGGA GGGGCG ATGT CGCCCC TCATTACGGCTAAAG TERM 3788 3661021 - 3661006 - R 86 -11.8 -2.90496 | opp_overlap 3661006, overlap 3660992 3660991 3661004 3661003 TGCCTCCTGAAAGGA GGGGCG ATGT CGCCCC TCATTACGGCTAAAG rbsB5 3662022 - 3661081 - | ribose ABC transporter, periplasmic ribose-binding protein TERM 3789 3661166 - 3661178 + g 80 -9.1 -4.15833 | TGTTTCTCTTCCAGA CCGGT TTT ACCGG TTTTCAGATACTGAT TERM 3790 3661324 - 3661335 + g 73 -7.2 -4.2679 | CACCACCACATCATT GCGG CCCG CCGC TTTTAATGCGGCTTC katG 3662557 - 3664770 + | catalase/peroxidase HPI TERM 3791 3664817 - 3664764 - f 84 -5.5 -5.36441 | gap 1, opp_overlap 3664776, overlap 3664767 3664771 3664772 3664776 CTTTGATATAAAAAA TAACTAACTAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTA-TAAGAGA AGAAAATCATAATAT TERM 3792 3664814 - 3664767 - f 100 -11.6 -4.77122 | gap 1, opp_overlap 3664776, overlap 3664764 3664771 3664772 3664776 TGATATAAAAAATAA CTAACTAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTA-TAAG AGAAGAAAATCATAA TERM 3793 3664811 - 3664771 - f 100 -13.5 -3.81144 | opp_overlap 3664776, overlap 3664767 3664764 3664772 3664776 ATAAAAAATAACTAA CTAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTAT AAGAGAAGAAAATCA TERM 3794 3664810 - 3664772 - f 100 -17 -2.86246 | opp_overlap 3664776, overlap 3664771 3664767 3664764 3664776 TAAAAAATAACTAAC TAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTA TAAGAGAAGAAAATC TERM 3795 3664806 - 3664776 - f 100 -13.4 -4.05045 | opp_overlap 3664776, overlap 3664772 3664771 3664767 3664764 AAATAACTAACTAAA TAGAGGGGAGGA TTTATCT TCCCCCCCTCTA TTTATAAGAGAAGAA TERM 3796 3664776 - 3664806 + F 88 -11.2 -3.85698 | opp_overlap 3664776 3664772 3664771 3664767 3664764 AAATAACTAACTAAA TAGAGGGGAGGA TTTATCT TCCCCCCCTCTA TTTATAAGAGAAGAA YpsIP31758_3255 3664847 - 3665230 + | cytochrome b562 YpsIP31758_3256 3665377 - 3665907 + | cytochrome b561 TERM 3797 3665941 - 3665960 + F 85 -9.2 -4.09685 | TGTTCCGTTTCTCTT TGCCCCGC GTTT GCGGGACA TTTTAAAGAATGCAA YpsIP31758_3257 3665970 - 3666083 + | hypothetical protein YpsIP31758_3258 3666845 - 3666165 - | twin-argninine leader-binding protein DmsD TERM 3798 3666782 - 3666770 - G 85 -2.6 -5.55769 | GCTCACAATAAAAAA GCGC ACCTA GCAC TCGCCCCGTTAGTCC TERM 3799 3666980 - 3666954 - R 100 -15.3 -3.85092 | ATGAGGCAGAGCAAA GCTATTCTGGG CGCTC CCCAGAATAGC CAAAGTGTCGCCGCC dmsC 3667865 - 3667005 - | anaerobic dimethyl sulfoxide reductase, C subunit TERM 3800 3667262 - 3667247 - G 71 -7.5 -4.09117 | CCGAGCTATAAATAA GCGGC AAACTG GCCGC CTGCATAATGATACT dmsB 3668484 - 3667867 - | anaerobic dimethyl sulfoxide reductase, B subunit dmsA 3670946 - 3668496 - | anaerobic dimethyl sulfoxide reductase, A subunit araD2 3672373 - 3671678 - | L-ribulose-5-phosphate 4-epimerase TERM 3801 3672444 - 3672422 - R 100 -8.5 -4.93365 | opp_overlap 3672422 GGCGATAATGAAAAA CATCATTCG GTATT CGAATGACG TCATTTAACTAATAG YpsIP31758_3263 3672764 - 3672651 - | hypothetical protein TERM 3802 3673236 - 3673214 - g 100 -4.9 -5.75342 | GTGTTGCAAAAAAAA CAAAAACTG ATCCG CAGTTTTGG CGGCGCTGTCGCACT YpsIP31758_3264 3673076 - 3673885 + | DeoR family transcriptional regulator YpsIP31758_3265 3674043 - 3675050 + | carbohydrate ABC transporter periplasmic-binding protein TERM 3803 3675596 - 3675617 + G 72 -5.8 -4.3586 | TCAAACAAAAAGCCT GCCAGATC TTGCAT GAACTGGC TTTTAGTCTCGATCC YpsIP31758_3266 3675199 - 3676713 + | carbohydrate ABC transporter ATP-binding protein YpsIP31758_3267 3676706 - 3677695 + | carbohydrate ABC transporter permease YpsIP31758_3268 3677708 - 3678745 + | carbohydrate ABC transporter permease TERM 3804 3678755 - 3678773 + F 72 -7.4 -4.0641 | opp_overlap 3678771 AAGTGATTGGGATTC CAGTGAGC GCA GCTAACTG TTTATGTAGATAAAC TERM 3805 3679034 - 3679020 - g 74 -4.2 -4.87807 | GGAATATACGAAAAA GCCC TACCTGC GGGC ACCAGTTGGGTCGAA YpsIP31758_3269 3678987 - 3679868 + | putative L-xylulose 5-phosphate 3-epimerase lyxK 3679879 - 3681375 + | cryptic L-xylulose kinase TERM 3806 3681530 - 3681507 - f 72 -9.6 -3.09823 | opp_overlap 3681502, overlap 3681522 GTGCGGAAAATGAGA TCCACCCTTT ATAA AGAGGGTGGA ACCGTCGCTTAAGCC TERM 3807 3682140 - 3682124 - g 75 -3.6 -5.03715 | overlap 3682126 ATCATGGGTAAAAAA GGCCAG CGGGT CTGGAC TGGGGGTAACGATGC YpsIP31758_3271 3681773 - 3683416 + | fumarate hydratase, class I TERM 3808 3683485 - 3683516 + F 100 -10.2 -4.36595 | opp_overlap 3683485, overlap 3683476 TTAAGCGGCTATCAA GGCCTGAGTTCT TCATTCAC GGAGCTCAGGCC TTTTCCGTTTCAGTG YpsIP31758_3272 3683599 - 3683850 + | hypothetical protein map2 3683847 - 3684632 + | methionine aminopeptidase, type I YpsIP31758_3274 3684818 - 3684642 - | hypothetical protein TERM 3809 3684763 - 3684787 + g 75 -7.8 -4.19238 | gap 1, opp_overlap 3684764, overlap 3684764 CCTGAATGCCATTCA AG-CCGCGCCA CCTC TGGCGCGGACG TTTTACCCTTCGGCC TERM 3810 3684764 - 3684786 + g 76 -11.3 -3.11222 | gap 1, opp_overlap 3684764, overlap 3684763 CTGAATGCCATTCAA G-CCGCGCCA CCTC TGGCGCGGAC GTTTTACCCTTCGGC TERM 3811 3684785 - 3684764 - G 78 -11.5 -3.07994 | opp_overlap 3684764 3684763 CTGAATGCCATTCAA GCCGCGCCA CCTC TGGCGCGGA CGTTTTACCCTTCGG YpsIP31758_3275 3686134 - 3684851 - | putative enterotoxin TERM 3812 3686334 - 3686356 + r 70 -7.7 -3.62255 | opp_overlap 3686333, overlap 3686331 TGAATTCCAATTCAG CCCGCCTTT GGATA AAAGGCCGG TTAGTTCTTCTTGAA YpsIP31758_3276 3688663 - 3686567 - | TonB-dependent receptor YpsIP31758_3277 3689128 - 3688982 - | hypothetical protein YpsIP31758_3278 3689324 - 3690703 + | cytochrome c peroxidase YpsIP31758_3279 3690768 - 3691538 + | polar amino acid ABC transporter, periplasmic amino acid-binding protein TERM 3813 3692144 - 3692123 - g 85 -3.1 -5.69068 | opp_overlap 3692127, overlap 3692127 TAAAAAGATAAAAAA TAAATTCAT TGAG ATGAAATTA ATGACTTTACAGCTT TERM 3814 3692140 - 3692127 - g 80 -3.9 -5.19003 | opp_overlap 3692127, overlap 3692123 AAGATAAAAAATAAA TTCAT TGAG ATGAA ATTAATGACTTTACA YpsIP31758_3280 3691962 - 3692165 + | hypothetical protein YpsIP31758_3281 3692886 - 3693227 + | DNA-binding transcriptional repressor ArsR TERM 3815 3693319 - 3693330 + G 70 -2.2 -4.9218 | GAGGCGTTATGTTGT TGGC TGGT GCTA TTTTTATCCTGACTA arsB 3693312 - 3694601 + | arsenical pump membrane protein TERM 3816 3694715 - 3694739 + T 72 -6.3 -4.2558 | overlap 3694701 3694716 GCCTATTAGCATTGC CGCCAGTAGGG TTA CTCTCCTGGCA TTTTGATGAAGGATC TERM 3817 3694716 - 3694738 + T 74 -9.8 -3.15027 | overlap 3694701 3694715 CCTATTAGCATTGCC GCCAGTAGGG TTA CTCTCCTGGC ATTTTGATGAAGGAT YpsIP31758_3283 3694970 - 3694857 - | hypothetical protein TERM 3818 3694964 - 3694950 - G 76 -2.2 -5.33131 | TAATAAAAAAACAAA TTTAAC AAA ATTAAA GACCAATTACTGATT YpsIP31758_3284 3695168 - 3696127 + | sugar-binding domain-containing protein YpsIP31758_3285 3696922 - 3696248 - | dihydroxyacetone kinase, L subunit YpsIP31758_3286 3697930 - 3696929 - | dihydroxyacetone kinase family protein TERM 3819 3697718 - 3697673 - G 73 -5.3 -4.58685 | overlap 3697674 3697675 AAACGCTTCTAAAAA TGCCCCAGCCGCCGGGGAG GAGAAGAT CTCACCAACCGCTACGGCA TCCAGCATATTTTTA TERM 3820 3697868 - 3697879 + g 72 -5.8 -4.42619 | opp_overlap 3697867 AAAATGTGGATAAGC GGCT AAAT AGCC TTTTATCGCCTCTTC YpsIP31758_3287 3698787 - 3698017 - | short chain dehydrogenase YpsIP31758_3288 3699966 - 3698851 - | zinc-binding dehydrogenase family oxidoreductase TERM 3821 3700305 - 3700281 - H 80 -10.1 -3.69364 | opp_overlap 3700286 3700299, overlap 3700285 ATTGAATATATATAA CAAATGATCAC ATG GTGATCTTTTG AAAGACTTGGTTTTA TERM 3822 3700301 - 3700285 - H 70 -5.1 -4.45484 | opp_overlap 3700286 3700299, overlap 3700281 AATATATATAACAAA TGATCAC ATG GTGATCT TTTGAAAGACTTGGT TERM 3823 3700286 - 3700300 + H 79 -8.6 -4.09739 | opp_overlap 3700285 3700281, overlap 3700299 ATATATATAACAAAT GATCAC ATG GTGATC TTTTGAAAGACTTGG rpiB 3700438 - 3700893 + | ribose-5-phosphate isomerase B YpsIP31758_3290 3701201 - 3701067 - | hypothetical protein TERM 3824 3701142 - 3701160 + g 71 -6.6 -4.18351 | overlap 3701146 ATCTTTCAGCTCAGA TGCGGGGC AGT GCCCTTCA TTTCTGATTTGCTTT TERM 3825 3701146 - 3701156 + g 71 -8.2 -3.67022 | overlap 3701142 TTCAGCTCAGATGCG GGGC AGT GCCC TTCATTTCTGATTTG YpsIP31758_3291 3701727 - 3701614 - | hypothetical protein TERM 3826 3702734 - 3702716 - gR 80 -8.8 -3.91897 | opp_overlap 3702716 CCGCCGAGTTACAAA CCCCCTTG AGA CAAGTGGG CGATTTAGAACGTAT TERM 3827 3703569 - 3703582 + Gr 70 -9.5 -2.89527 | overlap 3703566 3703579 CAAAAGTACCTATAT GCGCC AAAC GGCGC TGATTGTGCTCTTGG mutS 3701698 - 3704253 + | DNA mismatch repair protein TERM 3828 3704523 - 3704496 - TR 100 -7.1 -5.63504 | opp_overlap 3704496 AAGGGCATAAAAAAA CGGTGAACA TTTATCTATC TGTTCACCG TTGTTGTGTTTCATC TERM 3829 3704496 - 3704523 + Tr 72 -7.1 -4.05193 | opp_overlap 3704496 AAGGGCATAAAAAAA CGGTGAACA TTTATCTATC TGTTCACCG TTGTTGTGTTTCATC rpoS 3705624 - 3704626 - | RNA polymerase sigma factor RpoS nlpD 3706662 - 3705679 - | lipoprotein NlpD TERM 3830 3706128 - 3706103 - G 78 -11.9 -3.01712 | opp_overlap 3706090 CTTGGTGCGGTAACA GGTGCTGTTGT AGCG ACAACCGCACC AGATGATGGCAACAT TERM 3831 3706437 - 3706420 - G 73 -5.5 -4.57474 | overlap 3706422 CCAAGCGATATAAAA CAGCGTG TCAC CACGCTT AACGGTATAGGTATT TERM 3832 3706435 - 3706422 - G 70 -8.1 -3.89301 | overlap 3706420 AAGCGATATAAAACA GCGTG TCAC CACGC TTAACGGTATAGGTA pcm 3707410 - 3706784 - | protein-L-isoaspartate O-methyltransferase TERM 3833 3707333 - 3707347 + g 79 -11.4 -3.22298 | CGGTACCGCTTCGAT CGCCTG TAA CAGGCG TTCGTCGTGAATACC surE 3708168 - 3707404 - | stationary phase survival protein SurE TERM 3834 3707762 - 3707747 - G 71 -6.8 -4.21631 | AACGCACGTAATAAA CGGCAA GTCA CTGCCG CCGCCGTATCGTAAT truD 3709195 - 3708146 - | tRNA pseudouridine synthase D TERM 3835 3708230 - 3708215 - G 77 -10.4 -3.54129 | TACACTGGTCGCAAA GCTCCC CGCA GGGAGC CAGAAACTCAGCTCA TERM 3836 3708947 - 3708961 + g 91 -11.4 -4.07885 | AAACCACTGTTCGGT GACCGC ATG GCGGTC TTTTAACCCCGCATA ispF 3709694 - 3709206 - | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase ispD 3710558 - 3709833 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ftsB 3710882 - 3710562 - | cell division protein FtsB YpsIP31758_3301 3711513 - 3711196 - | hypothetical protein cysC 3712345 - 3711704 - | adenylylsulfate kinase cysN 3713783 - 3712347 - | sulfate adenylyltransferase subunit 1 TERM 3837 3712671 - 3712686 + g 71 -4.6 -4.56775 | overlap 3712673 ATATTGAATGTTTTC AACCCG CGCT CGGGTC TTTTTACCCGCCACT cysD 3714784 - 3713876 - | sulfate adenylyltransferase subunit 2 TERM 3838 3714553 - 3714527 - G 70 -8 -3.83844 | GCGATGAACCAACAA CTCACAGCCAAA CTC TTTGACCGTGTG ATCGCGAAATTCATA cysG2 3716213 - 3714795 - | siroheme synthase TERM 3839 3715258 - 3715248 - G 71 -8.2 -3.62096 | CGGTACCACCTGAAA CGGG ATC CCCG CTTGCGCCACAACTT YpsIP31758_3306 3716781 - 3716515 - | hypothetical protein TERM 3840 3716675 - 3716695 + g 85 -9.7 -4.37991 | opp_overlap 3716674 3716670 ATAAATTCAAGGCAT GGACGATCA TTA TGATCGCCC TTTTCCGTGTTTTTC TERM 3841 3716787 - 3716759 - G 100 -15.5 -3.1085 | CTAATTGACTCAATA CTACTTGTAGGTA TGA TACCCACAAGTAG CTCACCAGGGGGTTC YpsIP31758_3307 3716805 - 3717005 + | hypothetical protein TERM 3842 3717226 - 3717208 - g 71 -7.4 -4.11216 | opp_overlap 3717208 TTTTCATCTTCAAAA CCGTTGAA GGA TTCGACGG TTATTTCCCCGATAT TERM 3843 3717208 - 3717226 + G 79 -9.6 -3.91984 | opp_overlap 3717208 TTTTCATCTTCAAAA CCGTTGAA GGA TTCGACGG TTATTTCCCCGATAT YpsIP31758_3308 3717180 - 3717587 + | hypothetical protein TERM 3844 3717699 - 3717725 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3717688, overlap 3717694 3717700 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3845 3717700 - 3717726 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3717688, overlap 3717694 3717699 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3846 3717787 - 3717807 + T 100 -14.7 -3.14931 | GTTTGTCAGCAGTCT GGGGGCGCT CTT AGCGCCCTC TTAATGAGCCATAGA cysH 3718565 - 3717831 - | phosphoadenosine phosphosulfate reductase cysI 3720292 - 3718562 - | sulfite reductase subunit beta YpsIP31758_3311 3722130 - 3720292 - | sulfite reductase subunit alpha TERM 3847 3721154 - 3721168 + g 74 -6.4 -4.431 | overlap 3721149 3721156 TGACTGAGCAGCGCC TGTGCC AGT GGCATA TTTTGTCCGTCAATA YpsIP31758_3312 3722517 - 3722882 + | putative 6-pyruvoyl tetrahydrobiopterin synthase YpsIP31758_3313 3723787 - 3723116 - | radical SAM domain-containing protein TERM 3848 3723735 - 3723718 - G 82 -5.5 -5.13741 | GCAAGCGAACAAAAA TCGCTGG AACG CCAGTGA AATAACCCTCGCCCT YpsIP31758_3314 3723907 - 3723806 - | hypothetical protein TERM 3849 3723872 - 3723851 - G 79 -10.2 -3.72576 | opp_overlap 3723851 CCGGCCTCCACCAAA CTGGCTAC GCTCGG GTAGCCAG TTTAACTGTATCAGA TERM 3850 3723851 - 3723872 + g 79 -10.2 -3.74077 | opp_overlap 3723851 CCGGCCTCCACCAAA CTGGCTAC GCTCGG GTAGCCAG TTTAACTGTATCAGA sodC 3724478 - 3723891 - | copper/zinc superoxide dismutase TERM 3851 3724765 - 3724778 + r 70 -3.7 -4.90266 | opp_overlap 3724765, overlap 3724759 CAACGCATAAAAAAA CCCGC CGAA GCAGG TTTTTAATTAATCGG TERM 3852 3724778 - 3724765 - R 95 -5.9 -5.66684 | opp_overlap 3724765 3724759 CAACGCATAAAAAAA CCCGC CGAA GCAGG TTTTTAATTAATCGG eno 3726145 - 3724850 - | phosphopyruvate hydratase TERM 3853 3726211 - 3726188 - R 95 -13.1 -3.02109 | AAAACTCCAGACAGA GGGGGCGAC ATCTCA GCCGCCCCC TACCACCAAATATTT pyrG 3727863 - 3726226 - | CTP synthetase YpsIP31758_3318 3728917 - 3728075 - | nucleoside triphosphate pyrophosphohydrolase relA 3731332 - 3729098 - | GDP/GTP pyrophosphokinase TERM 3854 3729483 - 3729465 - G 72 -6 -4.36914 | CCTTGCGTGATAAAA CCGATAAT TTG ATCACCGG GGATCGGCTGGCAAC TERM 3855 3729908 - 3729934 + g 73 -5 -4.68994 | ACCGAGGTTAGGATT CAGCCAGTCACG GCT TGGGTTTGGCTG TTTTTGAGTGATAAT YpsIP31758_3320 3731467 - 3731342 - | hypothetical protein YpsIP31758_3321 3731665 - 3731483 - | hypothetical protein barA 3731776 - 3734568 + | hybrid sensory histidine kinase BarA TERM 3856 3734629 - 3734605 - T 100 -9.3 -5.15526 | ATAGAAAACCAAAAA GGGCACAGC GAGATAA ACTGTGCCC TTGAGCTAAATGGAA degP 3736172 - 3734727 - | serine endoprotease YpsIP31758_3324 3737890 - 3736370 - | deoxyguanosinetriphosphate triphosphohydrolase mtnN 3738167 - 3738868 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase btuF 3738868 - 3739710 + | vitamin B12-transporter protein BtuF YpsIP31758_3327 3739710 - 3740324 + | hypothetical protein TERM 3857 3740363 - 3740386 + T 100 -8.8 -5.03715 | opp_overlap 3740363 TTTGAGCATAAAAAA CCGCGGCCAT TCTC ATGGTCACGG TTTTTTAGCGATGCT TERM 3858 3740386 - 3740363 - T 100 -8.8 -5.31275 | opp_overlap 3740363 TTTGAGCATAAAAAA CCGCGGCCAT TCTC ATGGTCACGG TTTTTTAGCGATGCT YpsIP31758_3328 3740953 - 3740609 - | iron-sulfur cluster insertion protein ErpA clcA 3742525 - 3741089 - | chloride channel protein TERM 3859 3741542 - 3741527 - G 81 -7.6 -4.56117 | GATAAAAATAAACAA CAGCAT GCCG ATGCTG AAATTACCGGCTGCC TERM 3860 3741979 - 3741960 - G 76 -11.4 -2.83522 | opp_overlap 3741961, overlap 3741959 AGCGGGGCATTAAAT GCCGCAGA CAGC CCTGCGGC TGCACCGGTTGCTAA TERM 3861 3743895 - 3743928 + G 74 -9 -3.69934 | gap 2, opp_overlap 3743890 3743895 CGCTAAAGAGGAGAA CATCCCACTG--GTGG TTAA CCACGTCGGTGGGATG TTTGGCCTATTCTTT hemL 3742867 - 3744147 + | glutamate-1-semialdehyde aminotransferase TERM 3862 3744399 - 3744416 + T 80 -9.9 -3.58343 | opp_overlap 3744393 3744392 GTCAATAACCTCTAA TCTCCTC TCCG GAGGAGA TTTCAGACTGCTGAC fhuB 3746532 - 3744520 - | iron-hydroxamate transporter permease subunit TERM 3863 3744566 - 3744554 - G 79 -3.3 -5.20222 | AGCAAATAAACAAAA TAGGG CGC CCCGA TAAATGTCGCTAATA fhuD 3747425 - 3746514 - | iron-hydroxamate transporter substrate-binding subunit TERM 3864 3747619 - 3747597 - R 75 -3.2 -5.12172 | overlap 3747598 3747601 CATTAATAAACAAAA CTTACCGGCG CAC CGCCAGCCGG GTGCGGTAAAATACC TERM 3865 3747615 - 3747601 - R 71 -9.2 -2.91398 | overlap 3747597 3747598 AATAAACAAAACTTA CCGGCG CAC CGCCAG CCGGGTGCGGTAAAA fhuC 3748378 - 3747584 - | iron-hydroxamate transporter ATP-binding subunit TERM 3866 3748342 - 3748329 - G 73 -2.3 -5.1244 | CCAGGAACAGAAAAA CTCAG TTCA CGGAG TATAAAAGTGCTGGA TERM 3867 3748677 - 3748644 - R 100 -8.7 -5.95539 | overlap 3748645 3748646 GCGCAAAGAAAAAAA TTGGCGGGCGCAGTC TGTA AACCACGCCCGCCGT CACATTTTATTGACC TERM 3868 3748676 - 3748645 - R 100 -12.2 -4.15696 | overlap 3748644 3748646 CGCAAAGAAAAAAAT TGGCGGGCGCAGTC TGTA AACCACGCCCGCCG TCACATTTTATTGAC TERM 3869 3748675 - 3748646 - R 100 -15.7 -3.07791 | overlap 3748645 3748644 GCAAAGAAAAAAATT GGCGGGCGCAGTC TGTA AACCACGCCCGCC GTCACATTTTATTGA mrcB 3751180 - 3748700 - | penicillin-binding protein 1b TERM 3870 3750189 - 3750173 - G 70 -7.9 -3.80094 | GCCAAAGTAATACAA GCTACCC AGC GGGAAGC CACGGATTTGGTCAC hrpB 3753793 - 3751289 - | ATP-dependent RNA helicase HrpB ligT 3753933 - 3754508 + | 2'-5' RNA ligase TERM 3871 3754817 - 3754806 - g 91 -4.4 -5.53288 | opp_overlap 3754806 GGCAATTGAAAAAAA TCAG ATTG CTGA ATTATCTGGTTACAA sfsA 3754498 - 3755253 + | sugar fermentation stimulation protein A dksA 3755423 - 3755878 + | DnaK transcriptional regulator DksA TERM 3872 3755948 - 3755906 - f 81 -10.7 -3.3676 | gap 1, opp_overlap 3755913, overlap 3755890 3755915 TGTAACACGGCATAA TGTGTAACACGGTGCCAGAG CCCT CTCCGGCACCGTGTTTGA-A CTGTTGGACCCCTTC TERM 3873 3755913 - 3755942 + F 100 -17.9 -3.66803 | opp_overlap 3755890 3755906 3755915 CGGCATAATGTGTAA CACGGTGCCAGAG CCCT CTCCGGCACCGTG TTTGAACTGTTGGAC TERM 3874 3755940 - 3755915 - f 100 -16.9 -3.07233 | opp_overlap 3755913, overlap 3755906 GCATAATGTGTAACA CGGTGCCAGAG CCCT CTCCGGCACCG TGTTTGAACTGTTGG gluQ 3756158 - 3757123 + | glutamyl-Q tRNA(Asp) synthetase TERM 3875 3757255 - 3757234 - g 78 -5.7 -4.66537 | TCCGCGAAGACAAAA CGGTCCGTG ATGA CAAGGCCCG TAAAGATAAAGTGCC TERM 3876 3758123 - 3758085 - g 71 -6.7 -4.22948 | opp_overlap 3758087 AAAACCTATTTAAAA CTGTGCGAATACCAGCT TTTCC AGCCGCTATTCCCACTG ATTGCCCGTAATTTT pcnB 3757212 - 3758687 + | poly(A) polymerase I folK 3758695 - 3759174 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YpsIP31758_3342 3759459 - 3759322 - | hypothetical protein panB 3759443 - 3760240 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 3877 3760476 - 3760490 + G 74 -2.8 -5.1356 | opp_overlap 3760465, overlap 3760478 AAACCCGCGCTGACG TGGTCG TGG TGACTA TTTTTGTTAATCCGC panC 3760328 - 3761182 + | pantoate--beta-alanine ligase TERM 3878 3761307 - 3761289 - f 78 -10.3 -3.29511 | GGCATTCCCCCATAA CGGGTTC GCTCG GAACCCG TGACCGCCGATGAGC panD 3761593 - 3761973 + | aspartate alpha-decarboxylase YpsIP31758_3346 3763359 - 3762106 - | polysaccharide deacetylase family protein TERM 3879 3763096 - 3763108 + g 91 -3.4 -5.75599 | CTTATTTAAATCGCC CAAC ATGTC GTTG TTTTTTTGTGCTTTA YpsIP31758_3347 3763470 - 3763598 + | hypothetical protein YpsIP31758_3348 3764391 - 3763621 - | ABC transporter, permease protein YpsIP31758_3349 3765314 - 3764388 - | ABC transporter, ATP-binding protein TERM 3880 3765476 - 3765495 + H 70 -9.4 -2.75307 | opp_overlap 3765491, overlap 3765465 3765491 TTACCGAAACTACTG TTCCGATT TCAA AATCGGAA TCCTTGCCGTATATT TERM 3881 3766083 - 3766069 - g 81 -7.8 -4.57341 | opp_overlap 3766070 AAGCGCGGGCAAAAA GCCATG ATC CACGGC TGGGTATATGGTATT YpsIP31758_3350 3765550 - 3766212 + | carbonic anhydrase hpt 3766947 - 3766402 - | hypoxanthine phosphoribosyltransferase TERM 3882 3767153 - 3767130 - R 100 -13.8 -5.24129 | overlap 3767132 CGGTTTTATAAAAAA CACCCCGGTC AACC GACCGGGGAG TGGCTCAGGCGCTGA TERM 3883 3767151 - 3767132 - R 100 -15 -4.25873 | overlap 3767130 GTTTTATAAAAAACA CCCCGGTC AACC GACCGGGG AGTGGCTCAGGCGCT cueO 3768759 - 3767158 - | multicopper oxidase YpsIP31758_3353 3769076 - 3769423 + | hypothetical protein TERM 3884 3769638 - 3769628 - g 75 -3.2 -5.03314 | opp_overlap 3769632 3769633 TGTACCGCGAAAAAA CCGA GCA TCAG GACCTGGTGATTTTT speE 3769540 - 3770430 + | spermidine synthase speD 3770508 - 3771302 + | S-adenosylmethionine decarboxylase TERM 3885 3771376 - 3771355 - T 89 -10.2 -3.94746 | TGATACGGAATTAAA GGTGATCG TTCAGG CGATCACC TAAAAACGGCTCGTC YpsIP31758_3356 3771642 - 3771487 - | hypothetical protein TERM 3886 3772284 - 3772300 + G 85 -7.9 -4.7373 | opp_overlap 3772280 TATATAGCCAAGGGC CAGGGGC GCT GCCACTG TTTTTAATCGCCTGC TERM 3887 3772477 - 3772454 - g 85 -5.2 -5.27477 | gap 1, opp_overlap 3772468 AGCGCAATGAAAAAA GGCAACG-CCA CAC TGGTCGCGGCC CTATCCTATTTCACG YpsIP31758_3357 3771740 - 3772627 + | hypothetical protein YpsIP31758_3358 3773111 - 3772752 - | hypothetical protein TERM 3888 3773337 - 3773357 + r 100 -13.9 -4.21194 | opp_overlap 3773319 3773337 TTTTTAAAATAGAAA CGGGAGGCC AAT GGCCCCCCG TTTTAGCTGATGCGA TERM 3889 3773357 - 3773337 - R 100 -16.1 -4.45168 | opp_overlap 3773337, overlap 3773319 TTTTTAAAATAGAAA CGGGAGGCC AAT GGCCCCCCG TTTTAGCTGATGCGA acnB 3776007 - 3773410 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 3890 3775608 - 3775624 + g 73 -9.5 -3.30124 | CAGCTTTGGCTTTAT CTTCTAC GTC GTAGAAG TTATCGAACATCAGC TERM 3891 3775885 - 3775900 + g 91 -6.8 -5.2189 | overlap 3775887 TAATAGGAATTCTTC TTCGCC CGCA GGCGGA TTTTTTAATGATTCA TERM 3892 3776476 - 3776495 + r 83 -9.2 -4.02396 | opp_overlap 3776476, overlap 3776466 TAGGCTAAAAAAAAA CGGCCCCT ATGT AGGGACCG TTTCACTTTTATTTA TERM 3893 3776495 - 3776476 - R 100 -11.4 -6.09133 | opp_overlap 3776476 3776466 TAGGCTAAAAAAAAA CGGCCCCT ATGT AGGGACCG TTTCACTTTTATTTA lpdA 3777991 - 3776567 - | dihydrolipoamide dehydrogenase TERM 3894 3777080 - 3777070 - G 75 -5.4 -4.81551 | opp_overlap 3777070 3777074 CACCGATAGCAAAAA TGTG TGG CACA TTGGTGCGCAGTTGC YpsIP31758_3361 3778279 - 3778118 - | hypothetical protein TERM 3895 3778292 - 3778268 - G 100 -17.2 -3.54743 | opp_overlap 3778264, overlap 3778253 3778271 3778283 GAGCAGTAACCACAA CAAGGCCGGC ACGAA GCCGGCCTTG GCGATTACATCACCA TERM 3896 3778289 - 3778271 - G 93 -13.1 -3.90241 | opp_overlap 3778264, overlap 3778268 3778253 3778283 CAGTAACCACAACAA GGCCGGC ACGAA GCCGGCC TTGGCGATTACATCA aceF 3779877 - 3778297 - | dihydrolipoamide acetyltransferase TERM 3897 3779270 - 3779313 + g 75 -10.2 -3.44051 | gap 1, overlap 3779264 3779272 GCGGCAGGTGCGGCG GCTGGCGCTGGCGCGACAGGT GCG GCTTGTTGAGCCGGAGCC-GC TTCTGCTGCTGGCGC TERM 3898 3779580 - 3779610 + g 100 -8.9 -5.25772 | gap 1, overlap 3779579 TCGCCGCAGAGGCTG CCGGAGCCG-CTGC CTGA GCAGGCGCCGCCGG TTTTTCTTCTGCTTT aceE 3782554 - 3779891 - | pyruvate dehydrogenase subunit E1 TERM 3899 3781536 - 3781518 - G 84 -13.2 -2.56596 | overlap 3781514 TCTTTCACTAATGCA GCCGTTTC TGG GAAACGGC CAAAGAAGTGTTCAC pdhR 3783514 - 3782750 - | transcriptional regulator PdhR TERM 3900 3783475 - 3783452 - G 73 -9.6 -3.36273 | opp_overlap 3783456 CCCTTCCAAGATCAA GTATTCGAGC TGCT GCTCGATTAC ATCTGATAGTTTGGG TERM 3901 3783828 - 3783802 - H 71 -6.8 -4.08689 | overlap 3783798 CATTTAATAATTAAA TTTAAATTCATA TTT TTTGAATTTAAA TTCACACTTAACTAA YpsIP31758_3365 3783980 - 3784099 + | hypothetical protein TERM 3902 3784581 - 3784616 + G 71 -8.4 -3.72141 | gap 1, opp_overlap 3784593 CAGCTAGGCGAAATG GTGGTTGAA-GAACCTG TAG CCGGTTCCTTTAGCCAC TTTGCGTATAAATAT TERM 3903 3784855 - 3784875 + G 77 -4.7 -4.88405 | opp_overlap 3784855 3784858, overlap 3784840 3784850 TTGCCATCATTAAAG TGATCGCGA TTA TTGCGATGA TTTTATTTGGCGGTT aroP2 3784377 - 3785774 + | aromatic amino acid transport protein AroP TERM 3904 3785814 - 3785844 + T 100 -16.2 -3.02511 | opp_overlap 3785810 CAGCTAGTTAACCCT ATCTAGGCCAGCAC TTA GTGCTGGCCTAGGC TATTGACAAAGTACC YpsIP31758_3367 3787061 - 3786207 - | regulatory protein AmpE TERM 3905 3786894 - 3786872 - G 73 -3.5 -4.94058 | overlap 3786867 3786874 GGAAGCCAAACAAAA TATTTTGCA CTAAT TGCAAAATC CCCCAAACCAGCACC ampD 3787885 - 3787334 - | N-acetyl-anhydromuranmyl-L-alanine amidase nadC 3787998 - 3788906 + | quinolinate phosphoribosyltransferase TERM 3906 3789079 - 3789067 - f 79 -3.3 -5.30155 | overlap 3789068 GTATGAATTAAAAAA CGGCA CCC TGCCT CCAGTTTCTTAAACA pilA 3789109 - 3789573 + | putative major pilin subunit YpsIP31758_3371 3789566 - 3791104 + | hypothetical protein YpsIP31758_3372 3791101 - 3792300 + | type IV pilin biogenesis protein guaC 3793784 - 3792741 - | guanosine 5'-monophosphate oxidoreductase coaE 3794080 - 3794700 + | dephospho-CoA kinase YpsIP31758_3375 3794697 - 3795449 + | hypothetical protein TERM 3907 3795713 - 3795736 + G 74 -3.1 -5.06414 | AAAAGTCGTTATCTG GGGTGAACA AAGCCC TTTTCGCCC TTTTTGTTGCAAGCG yacG 3795657 - 3795863 + | zinc-binding protein TERM 3908 3795995 - 3795968 - T 100 -9.3 -5.00884 | gap 1, opp_overlap 3795972 ATGTGTTTTAAAAAA TGGAGCAA-ACG ACGGA CGTCTTGCTCCA TTAAAATAAAGTAGG mutT 3796419 - 3796033 - | nucleoside triphosphate pyrophosphohydrolase TERM 3909 3796502 - 3796478 - R 89 -7.2 -4.97888 | gap 1, overlap 3796482 AAAAAAACTTAAAAA TAAAGGGCGGT ATTA ACCGCCC-TCA GACTACTGACAAACC TERM 3910 3796499 - 3796482 - R 100 -12.7 -4.92828 | overlap 3796478 AAACTTAAAAATAAA GGGCGGT ATTA ACCGCCC TCAGACTACTGACAA TERM 3911 3796588 - 3796562 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 3796571, overlap 3796563 3796578 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3912 3796589 - 3796563 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 3796571, overlap 3796562 3796578 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3913 3796667 - 3796684 + r 100 -12.7 -4.21343 | opp_overlap 3796662 3796663, overlap 3796662 TTGTCAATAACCTCA GGGCGGT ATTA ACCGCCC TTTATCTATATTACA secA 3799428 - 3796714 - | preprotein translocase subunit SecA TERM 3914 3798312 - 3798322 + g 77 -6.8 -4.50661 | opp_overlap 3798311 3798312 GGAAAGTGATAGAAG CCAG TGT CTGG TTTTCATTCTGGATT TERM 3915 3799339 - 3799359 + g 71 -4.7 -4.65895 | overlap 3799342 AATATCAGGTTCCAT GCGGTTGAT GAC ATCAACTAC TTTTTGCATGCGGCG secM 3800039 - 3799506 - | SecA regulator SecM TERM 3916 3800579 - 3800542 - g 75 -11.4 -2.71731 | opp_overlap 3800532 GTGATCTTGGAACGA CTGGCTGCGTTGGC CGGAGAGGGT GCCAACGCAACCAA GCGTGATAAGTAGCT YpsIP31758_3380 3800068 - 3800592 + | hypothetical protein lpxC 3801694 - 3800774 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 3917 3801615 - 3801625 + g 82 -5.4 -5.04385 | GGCGCGGGTCGCATT GTCA GCG TGAC TTTTTTACCGGTGTG ftsZ 3802945 - 3801794 - | cell division protein FtsZ TERM 3918 3802663 - 3802696 + g 70 -8.1 -3.85522 | overlap 3802665 TAAAGACCATATCCG CACCGTCAAGCGCTG CACG CAGAGCTTCACGGTC TTCTTCTGCTGAATT TERM 3919 3802665 - 3802694 + g 79 -10.7 -3.50808 | overlap 3802663 AAGACCATATCCGCA CCGTCAAGCGCTG CACG CAGAGCTTCACGG TCTTCTTCTGCTGAA ftsA 3804274 - 3803018 - | cell division protein FtsA ftsQ 3805128 - 3804301 - | cell division protein FtsQ TERM 3920 3804755 - 3804767 + g 75 -7.7 -4.30014 | GCGAAGGGCACGTAC TCCAC CAG GTGGA TTTTAAGTTCATCCG YpsIP31758_3385 3806050 - 3805130 - | D-alanine--D-alanine ligase murC 3807545 - 3806043 - | UDP-N-acetylmuramate--L-alanine ligase murG 3808726 - 3807656 - | N-acetylglucosaminyl transferase TERM 3921 3807915 - 3807898 - G 70 -2.5 -4.87786 | overlap 3807899 3807900 GGAATGGCACAAAAA TCGCGGG TAGC CCCGCCG CCGCCACTTCACTGA ftsW 3809925 - 3808723 - | cell division protein FtsW murD 3811241 - 3809925 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 3922 3810133 - 3810114 - G 70 -10 -3.09933 | GCGCAACGCAGCCAA TTGACCGC CATC GCGGCCAA AACAGTAGACCTTGA mraY 3812326 - 3811244 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 3813696 - 3812320 - | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase murE 3815180 - 3813693 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase YpsIP31758_3393 3816930 - 3815167 - | penicillin-binding protein TERM 3923 3815703 - 3815687 - G 77 -8.7 -4.18197 | opp_overlap 3815687 3815689 AGCCCGTAGCCAAAA GAGAAGG TGG CCCTCTC TATGTCAGACCACCG TERM 3924 3816886 - 3816866 - G 71 -6.8 -4.31085 | opp_overlap 3816867, overlap 3816867 CACAGCAACGCAAAA CGCCAGCT AATAA AGCTGGCT TGTTCTTCCTGACGC TERM 3925 3816885 - 3816867 - G 73 -10.3 -3.17928 | opp_overlap 3816867, overlap 3816866 ACAGCAACGCAAAAC GCCAGCT AATAA AGCTGGC TTGTTCTTCCTGACG TERM 3926 3816867 - 3816885 + g 85 -10.3 -3.99374 | opp_overlap 3816867 3816866 ACAGCAACGCAAAAC GCCAGCT AATAA AGCTGGC TTGTTCTTCCTGACG ftsL 3817313 - 3816996 - | cell division protein FtsL mraW 3818272 - 3817310 - | S-adenosyl-methyltransferase MraW mraZ 3818733 - 3818275 - | cell division protein MraZ TERM 3927 3818530 - 3818510 - G 70 -7.6 -3.92324 | overlap 3818511 TGCCCTAACAGCAAA CGCTGAAC TCGAC GTTCAGCA GGGTTCATGCTCGAC TERM 3928 3819385 - 3819411 + H 72 -10.1 -2.88849 | gap 1, overlap 3819380 3819386 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3929 3819386 - 3819412 + H 84 -10.1 -3.82218 | gap 1, overlap 3819380 3819385 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3930 3820214 - 3820226 + G 82 -5.5 -5.09173 | CAATGGTTATGGGGG TGGCC TAC GGCTA TTTTTTGGAATATTG YpsIP31758_3397 3819835 - 3820275 + | hypothetical protein TERM 3931 3820397 - 3820373 - T 100 -9.9 -4.49556 | opp_overlap 3820376, overlap 3820375 3820376 TTGTCAGCAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3932 3820395 - 3820375 - T 100 -12.5 -3.85603 | opp_overlap 3820376, overlap 3820373 3820376 GTCAGCAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3933 3820376 - 3820394 + T 100 -16 -4.8048 | opp_overlap 3820375 3820373 3820376 TCAGCAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3934 3820394 - 3820376 - T 100 -16 -2.90639 | opp_overlap 3820376, overlap 3820375 3820373 TCAGCAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_3398 3820984 - 3820475 - | IS1541, transposase TERM 3935 3821046 - 3821064 + r 100 -16 -4.37092 | opp_overlap 3821046 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3936 3821064 - 3821046 - R 100 -16 -3.07307 | opp_overlap 3821046 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 3937 3821102 - 3821085 - R 100 -11.3 -4.48987 | opp_overlap 3821085 TGGGCACAATCAAAA TCAGGGC GGGT GCCCTGA TTCGTTATAGTGAAC TERM 3938 3821085 - 3821102 + r 89 -11.3 -3.47322 | opp_overlap 3821085 TGGGCACAATCAAAA TCAGGGC GGGT GCCCTGA TTCGTTATAGTGAAC YpsIP31758_3399 3822127 - 3821117 - | DNA-binding transcriptional regulator FruR TERM 3939 3822110 - 3822094 - G 71 -9.3 -3.53012 | opp_overlap 3822093 CCGTTGTGCGCGAAA CGCCCGC AAG GCGCGCG ATCTCATCCAGTTTC TERM 3940 3822176 - 3822163 - R 74 -6.7 -4.33165 | overlap 3822168 GTAAAGTGATGAAAA GCAGA GCGC TCTGC CGAGAGCCAGCATCC TERM 3941 3822549 - 3822529 - R 100 -13.3 -6.25741 | AAATAAGAAAAAAAA GCTCAACGC TAT GCGCTGAGC CTGATCATTAGAGCG ilvN 3823072 - 3822578 - | acetolactate synthase 3 regulatory subunit ilvB1 3824802 - 3823075 - | acetolactate synthase 3 catalytic subunit TERM 3942 3824354 - 3824331 - G 78 -11 -3.36492 | gap 1 TTGGCAAGTCGATAA CCACCGGACCG GGA CGG-CCAGTGG ATGCCAGATAAAAGG TERM 3943 3824871 - 3824885 + r 75 -5.6 -4.64159 | opp_overlap 3824873, overlap 3824873 CGATATTCTGTAGGA AAGGCG CAA CGCCTC TTTATTCTTATTTGT TERM 3944 3824883 - 3824873 - R 73 -8.2 -3.73402 | opp_overlap 3824871 3824873 ATATTCTGTAGGAAA GGCG CAA CGCC TCTTTATTCTTATTT TERM 3945 3824873 - 3824883 + r 75 -8.2 -3.90009 | opp_overlap 3824873, overlap 3824871 ATATTCTGTAGGAAA GGCG CAA CGCC TCTTTATTCTTATTT TERM 3946 3825243 - 3825204 - R 100 -13.6 -3.5362 | overlap 3825202 3825206 GAACGGTCAGAAAGA CAGCAGCGACCAGTGTGA GACT TAACACCGGTCACTGCGG GGAGGAATGGTGAAC TERM 3947 3825241 - 3825206 - R 100 -14.8 -3.33798 | overlap 3825204 3825202 ACGGTCAGAAAGACA GCAGCGACCAGTGTGA GACT TAACACCGGTCACTGC GGGGAGGAATGGTGA YpsIP31758_3402 3827067 - 3825262 - | AMP binding protein YpsIP31758_3403 3828576 - 3827620 - | leucine transcriptional activator TERM 3948 3827894 - 3827910 + g 79 -2.2 -5.39721 | opp_overlap 3827894 GTTGAGTCGTAATAA GGCTCA CTGAA TGACCC TTTTTTATCTAATGA leuL 3829622 - 3829705 + | leucine operon leader peptide TERM 3949 3829746 - 3829727 - f 86 -10.6 -3.83155 | opp_overlap 3829728, overlap 3829728 CATCAAGATTAACAA GCCCGCGC AAAT GCGCGGGT TTTTTTTTATCCGCT TERM 3950 3829728 - 3829745 + F 100 -14.1 -6.22802 | opp_overlap 3829727 3829728 ATCAAGATTAACAAG CCCGCGC AAAT GCGCGGG TTTTTTTTTATCCGC TERM 3951 3829745 - 3829728 - f 95 -14.1 -2.8917 | opp_overlap 3829728, overlap 3829727 ATCAAGATTAACAAG CCCGCGC AAAT GCGCGGG TTTTTTTTTATCCGC leuA 3829791 - 3831353 + | 2-isopropylmalate synthase leuB 3831356 - 3832447 + | 3-isopropylmalate dehydrogenase TERM 3952 3832948 - 3832936 - g 74 -9.1 -3.64703 | TGTTGGCGACCCAAA CCCTG AAG CAGGG GCGAGCCAAAACCAT leuC 3832449 - 3833879 + | isopropylmalate isomerase large subunit leuD 3833894 - 3834496 + | isopropylmalate isomerase small subunit TERM 3953 3834637 - 3834607 - T 86 -12 -3.14581 | gap 1, overlap 3834605 3834603 TAAGTGACTAATAGA TTGTTGGTGCCGG GTCGTA CCGGC-CCAACAA GTAACACGTTTAACT setA 3835918 - 3834737 - | sugar efflux transporter A TERM 3954 3835391 - 3835381 - G 79 -3.2 -5.31855 | CACTAATAACAAAAA TACC GGC GGCA ATGCTAAACATCAGC TERM 3955 3835953 - 3835942 - H 71 -4.4 -4.84359 | CCAGCGCCAGAAAAA GCTA TTAT TAGC ATAATCATAATGGTG TERM 3956 3836471 - 3836450 - g 100 -8.7 -5.93252 | GGGAAAAAGAAAAAA GCCAGCAGA AAAA CCTACTGGC TGGTGAAAAACACCA YpsIP31758_3410 3836396 - 3836515 + | hypothetical protein sgrR 3836650 - 3838311 + | transcriptional regulator SgrR TERM 3957 3838417 - 3838429 + T 80 -3.5 -5.37043 | TTAAATACTCTCATT TTTTA TTG TAAAA TTTTTTATATGCGAT TERM 3958 3839488 - 3839478 - T 74 -4.6 -4.75174 | GATGGAAGGTAAAAA CAGC CAG GCCG ATGTGATTTTAGGGT TERM 3959 3839562 - 3839538 - T 100 -9.9 -4.55295 | opp_overlap 3839541, overlap 3839540 3839541 GGCGGCAGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3960 3839560 - 3839540 - T 100 -12.5 -3.88703 | opp_overlap 3839541, overlap 3839538 3839541 CGGCAGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3961 3839559 - 3839541 - T 100 -16 -2.92499 | opp_overlap 3839541, overlap 3839540 3839538 GGCAGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3962 3839541 - 3839559 + T 100 -16 -4.8048 | opp_overlap 3839541 3839540 3839538 GGCAGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_3413 3840149 - 3839640 - | IS1541, transposase TERM 3963 3840211 - 3840229 + H 100 -16 -4.36914 | opp_overlap 3840211 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3964 3840229 - 3840211 - H 100 -16 -3.07307 | opp_overlap 3840211 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 3965 3840274 - 3840244 - H 76 -9.8 -3.28712 | opp_overlap 3840247, overlap 3840248 GTTTTCTGGGCACAA CAAACTGGCTTG TTTACCC CAAGCCAGGTTG ATACCCGTAACCTGA TERM 3966 3840270 - 3840248 - H 88 -9.2 -4.30719 | opp_overlap 3840247, overlap 3840244 TCTGGGCACAACAAA CTGGCTTG TTTACCC CAAGCCAG GTTGATACCCGTAAC TERM 3967 3840960 - 3840977 + G 73 -10.5 -3.14931 | CAGCCGTTAATCGCG CCCTGGC TATG GCCGGGG TTGCTGGCCGCTGGG TERM 3968 3842309 - 3842342 + G 79 -10.9 -3.58905 | opp_overlap 3842308 3842307, overlap 3842311 3842315 ACGCGCCCTGAAACG CCCACTGGCTCAGGC GCTG GCCTTTGCCAGTGTG TTATCTATCGGCGAT TERM 3969 3842311 - 3842340 + G 85 -12.1 -3.37198 | opp_overlap 3842308 3842307, overlap 3842309 3842315 GCGCCCTGAAACGCC CACTGGCTCAGGC GCTG GCCTTTGCCAGTG TGTTATCTATCGGCG thiP 3840930 - 3842537 + | thiamine transporter membrane protein thiQ 3842524 - 3843234 + | thiamine transporter ATP-binding subunit YpsIP31758_3417 3844070 - 3843303 - | hypothetical protein TERM 3970 3843634 - 3843611 - G 75 -8.1 -4.2074 | CGGGGAAGAGATAAA TCGGCGGCC ATGTCA GGCCACCAA TCACACTGGGTAAGG TERM 3971 3845084 - 3845095 + G 71 -7.2 -4.09805 | GCATTTCTTTGCTTC CGCC GCCG GGCG TTTAATTATTGATGG TERM 3972 3845780 - 3845806 + G 75 -3.7 -5.1101 | gap 2, overlap 3845781 TATGAATGCCTTTTA TGGC-GT-GCTGG GTT CCAGCGGCTGCCG TTTTTTCGATCCTCG polB 3844266 - 3846635 + | DNA polymerase II TERM 3973 3847443 - 3847481 + G 81 -9.5 -4.08216 | ACAGGATCGCTTATT CGCCGGTCAGATCGATC GCATG GATCGCTTTGCCCTGCG TTTTCGCGCCCGTAA TERM 3974 3849478 - 3849500 + G 71 -6.3 -4.16016 | gap 1 TTGATCCTGTCTGGC GATACCG-GC AGTT GCGCGGTGTC TTTATTGAAAAATAA rapA 3847096 - 3850002 + | ATP-dependent helicase HepA TERM 3975 3850123 - 3850149 + T 70 -7.2 -3.82218 | gap 1, opp_overlap 3850111, overlap 3850122 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCTCTGCCT TERM 3976 3850212 - 3850234 + T 100 -13.5 -5.71712 | TTGTCAGCAGTCTGA TATCCGGGG CATTC CCCCGGATA TTTTTTTGTCTGACG YpsIP31758_3420 3850611 - 3850258 - | hypothetical protein YpsIP31758_3421 3854127 - 3850633 - | hypothetical protein YpsIP31758_3422 3855746 - 3854136 - | hypothetical protein YpsIP31758_3423 3857098 - 3855743 - | hypothetical protein TERM 3977 3856309 - 3856321 + g 71 -4.8 -4.65895 | opp_overlap 3856283 ATTGGAACAACTGCT CAGG GTGTA CCTG TTTTTGCATCAACAC YpsIP31758_3424 3857709 - 3857218 - | putative lipoprotein TERM 3978 3857488 - 3857505 + g 80 -9.1 -4.18488 | opp_overlap 3857487 CCCCTGATACAAACC GGGGGGT GACC ACCCCTC TTTATTCAGCTCAAT YpsIP31758_3425 3858067 - 3857702 - | hypothetical protein YpsIP31758_3426 3858690 - 3858073 - | hypothetical protein YpsIP31758_3427 3859786 - 3858683 - | pentapeptide repeat-containing protein TERM 3979 3859724 - 3859684 - G 83 -6.9 -4.88795 | opp_overlap 3859693 ATTGAATAAAATAAA CCTCAGACAGCGTTAACTG CTG CAACTGACGCTGTGTAAAG TGCCGGCCAATAATC YpsIP31758_3428 3862031 - 3859812 - | pentapeptide repeat-containing protein YpsIP31758_3429 3864392 - 3862044 - | Rhs element Vgr protein YpsIP31758_3430 3867099 - 3864496 - | AAA family ATPase YpsIP31758_3431 3868085 - 3867102 - | hypothetical protein YpsIP31758_3432 3869922 - 3868078 - | hypothetical protein YpsIP31758_3433 3870398 - 3869955 - | hypothetical protein YpsIP31758_3434 3870990 - 3870472 - | hypothetical protein TERM 3980 3871040 - 3871056 + r 76 -10.9 -2.72991 | GTTAAATCAGTATTC GGCAACT CAA AGTTGCC TCATTAAAAATGTAC TERM 3981 3871130 - 3871155 + r 73 -5.5 -4.74598 | gap 1, opp_overlap 3871133 3871137 ATATTCCCCCTCTAA TAAGCG-AGTGA TAT TCACAGCGCTTA TTTCTTTTCGCTTTC YpsIP31758_3435 3872655 - 3871153 - | hypothetical protein TERM 3982 3871888 - 3871874 - G 71 -4.3 -4.67038 | opp_overlap 3871874, overlap 3871869 TCTTCAAAAGCAAAA TCATC AATAG GATGA TTTTTGGCACCATAC TERM 3983 3872532 - 3872518 - G 75 -11.4 -2.52015 | overlap 3872517 GGCATACGCAGCAAG CGTGCC TAT GGCACG GCGCACTGTGGCGGA YpsIP31758_3436 3873224 - 3872664 - | hypothetical protein YpsIP31758_3437 3874248 - 3873235 - | ImpA domain-containing protein YpsIP31758_3438 3874578 - 3875321 + | hypothetical protein TERM 3984 3875477 - 3875451 - f 100 -15.4 -3.16881 | opp_overlap 3875453 CACGTATCTGACGAA TAGTGTCCATTA TCT TAATGGACACTA TTACCCCAAATATAT TERM 3985 3875453 - 3875475 + F 100 -13.6 -3.02263 | opp_overlap 3875451 CGTATCTGACGAATA GTGTCCATTA TCT TAATGGACAC TATTACCCCAAATAT TERM 3986 3877078 - 3877066 - g 70 -7.7 -3.81339 | overlap 3877060 CATCCAGAAGCCAAA GCGAT GGC ATCGC GGCTGCAGCTACATG rluA 3876544 - 3877164 + | ribosomal large subunit pseudouridine synthase A djlA 3878314 - 3877481 - | Dna-J like membrane chaperone protein imp 3878499 - 3880841 + | organic solvent tolerance protein surA 3880909 - 3882213 + | peptidyl-prolyl cis-trans isomerase SurA TERM 3987 3882272 - 3882302 + G 88 -14.1 -2.62396 | GATTTAGCCATCGCT CTGGCTCAACAGG ATTGG CCTGTTGAGCTGG TAGTCTGCGCGGATC pdxA 3882197 - 3883192 + | 4-hydroxythreonine-4-phosphate dehydrogenase ksgA 3883185 - 3884003 + | dimethyladenosine transferase apaG 3884017 - 3884394 + | ApaG YpsIP31758_3446 3884411 - 3885280 + | diadenosine tetraphosphatase TERM 3988 3885318 - 3885347 + T 77 -10.9 -2.78706 | opp_overlap 3885323, overlap 3885323 TTGTAAAGACGCTAA TTAAAGACGCATG AGCC TATGCGTCTTTAG ATTTCACCTATAATT TERM 3989 3885342 - 3885323 - T 74 -7.9 -3.93026 | opp_overlap 3885318 3885323 AAGACGCTAATTAAA GACGCAT GAGCCT ATGCGTC TTTAGATTTCACCTA TERM 3990 3885323 - 3885342 + T 75 -8.6 -3.85165 | opp_overlap 3885323, overlap 3885318 AAGACGCTAATTAAA GACGCATG AGCC TATGCGTC TTTAGATTTCACCTA YpsIP31758_3447 3885834 - 3885370 - | hypothetical protein YpsIP31758_3448 3886440 - 3886321 - | hypothetical protein TERM 3991 3886596 - 3886631 + r 74 -9.9 -3.13368 | gap 1, opp_overlap 3886600, overlap 3886595 3886600 3886602 TTTATTTTTCTAAAT G-AAACAGGCCCATTA TTACC TAATGGGCCTGTATGC TAATTGTTTTGATAT TERM 3992 3886626 - 3886600 - R 100 -15.3 -4.05788 | opp_overlap 3886596 3886595 3886600 3886602 TTTTTCTAAATGAAA CAGGCCCATTA TTACC TAATGGGCCTG TATGCTAATTGTTTT TERM 3993 3886600 - 3886626 + r 100 -15.3 -2.91094 | opp_overlap 3886600, overlap 3886596 3886595 3886602 TTTTTCTAAATGAAA CAGGCCCATTA TTACC TAATGGGCCTG TATGCTAATTGTTTT TERM 3994 3886602 - 3886624 + r 86 -12.1 -2.9913 | opp_overlap 3886600, overlap 3886600 3886596 3886595 TTTCTAAATGAAACA GGCCCATTA TTACC TAATGGGCC TGTATGCTAATTGTT folA 3887139 - 3886657 - | dihydrofolate reductase TERM 3995 3887067 - 3887016 - G 78 -11 -3.37796 | TCTTACGACCCATAA TTACCGGTTTATTTAACGTGTTAC GTTT GAACCACGCTAAATCAGCCGGTAA ATGCCATGGCATAGC YpsIP31758_3450 3887753 - 3887289 - | hypothetical protein YpsIP31758_3451 3888550 - 3887750 - | hypothetical protein YpsIP31758_3452 3888865 - 3889479 + | LysE family translocator protein TERM 3996 3889652 - 3889679 + T 79 -8.4 -4.07885 | opp_overlap 3889656, overlap 3889656 TAAGCTGCGAACGTA AAAAGGGCGATG TTGC CATCGCCCTTGA TTTTCGCCACGGATG TERM 3997 3889675 - 3889656 - T 100 -13.6 -4.74103 | opp_overlap 3889652 3889656 CTGCGAACGTAAAAA GGGCGATG TTGC CATCGCCC TTGATTTTCGCCACG TERM 3998 3889656 - 3889675 + T 100 -13.6 -3.66908 | opp_overlap 3889656, overlap 3889652 CTGCGAACGTAAAAA GGGCGATG TTGC CATCGCCC TTGATTTTCGCCACG carB 3892938 - 3889705 - | carbamoyl phosphate synthase large subunit TERM 3999 3891971 - 3891957 - G 75 -11.4 -2.52896 | CCAGTGTGTAACCGA CCGCCA GTT TGGCGG CAATCTTGGCAATCG TERM 4000 3891980 - 3891999 + g 74 -10 -3.53444 | TTGGCGGCAATCTTG GCAATCGG GAAA CCGGTTGC TTTAGAGGCCAGTGC TERM 4001 3892895 - 3892913 + g 73 -2.2 -5.07275 | opp_overlap 3892871 3892888 3892887, overlap 3892899 ATAACAATCGGGCCT GCGCCCAG AAT CAGGATGC TTTTTATATCTGTAC carA 3894129 - 3892954 - | carbamoyl phosphate synthase small subunit TERM 4002 3893389 - 3893410 + g 74 -10.9 -3.05596 | GATCGCGTAATCGCA TGGTTCTGG GTCC CCAGGACCA TTGGATAAGAAGATG TERM 4003 3894546 - 3894528 - R 100 -6 -5.80951 | opp_overlap 3894528 ATTTAAAATAAAAAA GGACAATA AAA CATTGCCC TATTATCAAATGATT TERM 4004 3894589 - 3894572 - R 71 -3.4 -4.93296 | TGATTATGATAAAAA CAACCA CATCAC TGGTCG TAATTTACAGCATTA dapB 3895423 - 3894602 - | dihydrodipicolinate reductase TERM 4005 3895793 - 3895776 - R 100 -8.4 -5.46657 | overlap 3895788 TACCCCAATAAAAAA GCAGCC ACAAAG GGCTGC TTCAGACTGCTGACA YpsIP31758_3456 3895937 - 3895812 - | hypothetical protein TERM 4006 3895928 - 3895945 + g 71 -8.4 -3.767 | opp_overlap 3895923 TATCAATAACCTCAA GCAGCC GCAAAG GGCTGC TTTCGTCAGTAAATA ispH 3896958 - 3896005 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YpsIP31758_3458 3897397 - 3896939 - | peptidyl-prolyl cis-trans isomerase, FKBP-type lspA 3897974 - 3897465 - | lipoprotein signal peptidase TERM 4007 3897864 - 3897844 - G 80 -4.7 -5.03314 | overlap 3897845 GTTAGGTTGAAAAAA GGAATCAGT GGC ACCGATTCA TACAGAGCAAAGTGG ileS 3900790 - 3897974 - | isoleucyl-tRNA synthetase ribF 3901760 - 3900822 - | bifunctional riboflavin kinase/FMN adenylyltransferase TERM 4008 3901384 - 3901357 - G 85 -10.6 -4.15565 | gap 1 TGCAGTAGTTGAAAA TCC-CCCTGGCGC CCT GCGCCAAAGCGGA AGTCATCACCTACCG TERM 4009 3902337 - 3902322 - g 75 -6.2 -4.62783 | GACGCAGCGCAAAAA GCATTT AATG AAATGC AACCAATCGTGGATC rpsT 3902175 - 3902438 + | 30S ribosomal protein S20 TERM 4010 3902460 - 3902489 + T 100 -14.5 -3.08344 | opp_overlap 3902466 3902468, overlap 3902468 GACATTGAGTGCTTG TAAAAAGACCGGC TTAG GCCGGTTTTTTTA TCTCTATCGTTTGGC TERM 4011 3902483 - 3902466 - T 76 -6.9 -4.57073 | opp_overlap 3902460 3902468, overlap 3902468 GAGTGCTTGTAAAAA GACCGGC TTAG GCCGGTT TTTTTATCTCTATCG TERM 4012 3902481 - 3902468 - T 81 -9.5 -3.90048 | opp_overlap 3902460 3902468, overlap 3902466 GTGCTTGTAAAAAGA CCGGC TTAG GCCGG TTTTTTTATCTCTAT TERM 4013 3902468 - 3902481 + T 100 -9.5 -5.77988 | opp_overlap 3902468 3902466, overlap 3902460 GTGCTTGTAAAAAGA CCGGC TTAG GCCGG TTTTTTTATCTCTAT nhaR 3903468 - 3902569 - | transcriptional activator NhaR TERM 4014 3903574 - 3903545 - R 100 -13.7 -3.2048 | TTTAAATTCCACCAA GCATTGCTGCC TGCGCTTG GGCAGCAATGC TGAATCAATAACGTG nhaA 3904782 - 3903598 - | Na+/H+ antiporter NhaA TERM 4015 3904945 - 3904983 + r 100 -9.9 -4.67942 | gap 1, opp_overlap 3904945 3904955, overlap 3904955 TCCACATTCAACTGA TGAAAAAAAATCCTCGAT ATAA ATCGAGGA-TTTCTTTCA TTTTACTTTATTAAC TERM 4016 3904983 - 3904945 - R 81 -12.1 -2.56095 | gap 1, opp_overlap 3904945 3904955, overlap 3904955 TCCACATTCAACTGA TGAAAAAAAATCCTCGAT ATAA ATCGAGGA-TTTCTTTCA TTTTACTTTATTAAC TERM 4017 3904974 - 3904955 - R 100 -10.8 -5.86965 | opp_overlap 3904945 3904955, overlap 3904945 ACTGATGAAAAAAAA TCCTCGAT ATAA ATCGAGGA TTTCTTTCATTTTAC TERM 4018 3904955 - 3904974 + r 100 -10.8 -4.67692 | opp_overlap 3904955 3904945, overlap 3904945 ACTGATGAAAAAAAA TCCTCGAT ATAA ATCGAGGA TTTCTTTCATTTTAC dnaJ 3906164 - 3905025 - | chaperone protein DnaJ TERM 4019 3905075 - 3905088 + g 80 -3.1 -5.40072 | CATCTAAGAAGCTTT TAGCT CGCG GGCTA TTTTTTTCACCAGCA TERM 4020 3905914 - 3905890 - G 71 -4.1 -4.6644 | overlap 3905891 AAGATATCGGAAAAA TCAGCACCGCC GCC GCCGCCGCCGA AACCGCCGCCTCCCA TERM 4021 3906190 - 3906227 + r 100 -15.5 -3.53224 | opp_overlap 3906188, overlap 3906193 CCTACCCTTAACATG CGTGCACGGGCGTAGAG TTTC CTCGACGCCCGTGCTGG TTTCCAGCAACAGTA TERM 4022 3906193 - 3906224 + r 100 -20.2 -2.90496 | opp_overlap 3906188, overlap 3906190 ACCCTTAACATGCGT GCACGGGCGTAGAG TTTC CTCGACGCCCGTGC TGGTTTCCAGCAACA dnaK 3908186 - 3906276 - | molecular chaperone DnaK TERM 4023 3907914 - 3907943 + g 70 -7.9 -3.82084 | TGCAGCAATAATTTT GTACGGCATGATA TCTT TATCACGCTGTGC TTCTTCGTCTTGGAA TERM 4024 3908587 - 3908599 + G 75 -10.5 -3.39668 | overlap 3908588 AAGTTGGCGAATCCT GGCCC ATT GGGCC TTATGGGCTTTGGGA TERM 4025 3908634 - 3908648 + G 73 -7.1 -4.16842 | opp_overlap 3908634 3908644 TACCGTCTTGCTAAA CCTGC ACAAC GCAGG TTTCTTCCCGCTGAG TERM 4026 3908754 - 3908740 - g 89 -5.7 -5.31275 | opp_overlap 3908751 TTGGAGTATAAAAAA GGCAA CACAT TTGCC GCCACCGCATTTACC YpsIP31758_3467 3908560 - 3909171 + | hypothetical protein TERM 4027 3909242 - 3909204 - f 100 -13.5 -2.97925 | opp_overlap 3909204 AGCTTATATTACACA GCACCTTGAATATTA GGTAAAATT TAATATTCAAGGTGC TTTTACTTTCCACTC TERM 4028 3909204 - 3909242 + F 100 -17.8 -4.55798 | opp_overlap 3909204 AGCTTATATTACACA GCACCTTGAATATTAGGT AAA ATTTAATATTCAAGGTGC TTTTACTTTCCACTC TERM 4029 3910854 - 3910818 - g 85 -6.1 -5.16132 | overlap 3910813 GACATGAAAATAAAA TGATTTTAACTTACATT GAC AATGTAAATAACAATCA GTCACTCAGTTTACC YpsIP31758_3468 3909461 - 3911908 + | acetyltransferase domain-containing protein TERM 4030 3911965 - 3911923 - T 78 -5.3 -5.06505 | gap 2, opp_overlap 3911930 3911963, overlap 3911925 3911930 AAGTATAGATAAAAA GATAAAAGCCCATAATTTATT GAT AATAA-TTATGGGCTTTT-TA AGACGAATTGACTTA TERM 4031 3911964 - 3911925 - T 91 -10.4 -4.14422 | gap 1, opp_overlap 3911930 3911963, overlap 3911923 3911930 GTATAGATAAAAAGA TAAAAGCCCATAATTTATT GAT AATAA-TTATGGGCTTTTT AAGACGAATTGACTT TERM 4032 3911930 - 3911959 + T 100 -10.3 -4.57341 | gap 1, opp_overlap 3911925 3911923 3911930 GATAAAAAGATAAAA GCCCATAATTTATT GAT AATAA-TTATGGGC TTTTTAAGACGAATT TERM 4033 3911959 - 3911930 - T 100 -10.3 -5.02287 | gap 1, opp_overlap 3911930, overlap 3911925 3911923 GATAAAAAGATAAAA GCCCATAATTTATT GAT AATAA-TTATGGGC TTTTTAAGACGAATT YpsIP31758_3469 3913366 - 3911987 - | major facilitator transporter YpsIP31758_3470 3914081 - 3913494 - | molybdenum cofactor biosynthesis protein YpsIP31758_3471 3914325 - 3914167 - | hypothetical protein TERM 4034 3914326 - 3914311 - G 100 -10.4 -5.45652 | opp_overlap 3914311 ATCGGCAATAAAAAA GGTGGC TTGC GCCACC TCATTCAGATACCGA tal 3915322 - 3914369 - | transaldolase B TERM 4035 3914660 - 3914677 + g 91 -7 -5.32882 | GCTTGCACCCATCAC CACGGT CTTATA ACCGTG TTTTTTGTAGTACTG YpsIP31758_3473 3915854 - 3916630 + | hypothetical protein thrC 3918735 - 3917446 - | threonine synthase TERM 4036 3918569 - 3918554 - G 75 -5.4 -4.71426 | gap 1, overlap 3918565 TCGCTACCAATAAAA GCCGACA GAA TG-CGGC TACTGCGGGTCACAA thrB 3919668 - 3918739 - | homoserine kinase TERM 4037 3919183 - 3919169 - G 71 -6.4 -4.15508 | overlap 3919170 AACCAATCGCTAAAA CCAGGA ACA TCCTGA CTGATATAACCTTCC thrA 3922130 - 3919671 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 4038 3922223 - 3922201 - R 100 -12 -6.11644 | opp_overlap 3922201 TGATTGAAAAAAAAA GCCCGCAC TGTCTAG GTGCGGGC TTTTTTCTGTTGTTT TERM 4039 3922201 - 3922223 + r 100 -12.7 -5.57729 | opp_overlap 3922201 TGATTGAAAAAAAAA GCCCGCACT GTCTA GGTGCGGGC TTTTTTCTGTTGTTT thrL 3922335 - 3922249 - | thr operon leader peptide YpsIP31758_3478 3923234 - 3923950 + | two-component response regulator TERM 4040 3923997 - 3923974 - T 70 -7.4 -3.76607 | opp_overlap 3923976, overlap 3923976 GAATAGAGACGGAAA GAGCCAGCAC ACAG ATGCTGGCTT TTTTGTTTTTATATC TERM 4041 3923976 - 3923995 + T 100 -9.3 -5.98675 | opp_overlap 3923974 3923976 ATAGAGACGGAAAGA GCCAGCA CACAGA TGCTGGC TTTTTTGTTTTTATA TERM 4042 3923995 - 3923976 - T 78 -10 -3.45632 | opp_overlap 3923976, overlap 3923974 ATAGAGACGGAAAGA GCCAGCAC ACAG ATGCTGGC TTTTTTGTTTTTATA creA 3924591 - 3924124 - | hypothetical protein rob 3924817 - 3925683 + | right origin-binding protein YpsIP31758_3480 3926327 - 3925680 - | phosphoglycerate mutase YpsIP31758_3483 3926437 - 3926979 + | NTPase YpsIP31758_3482 3927368 - 3926976 - | Trp operon repressor YpsIP31758_3484 3929524 - 3927605 - | lytic murein transglycosylase YpsIP31758_3485 3930094 - 3932820 + | cation transporter HAD ATPase TERM 4043 3932861 - 3932841 - f 100 -11.8 -5.1523 | opp_overlap 3932841 GTCAGAAGAGAAAAA GCCCCGGA GCAGT CCCGGGGC TTTTGAGGTAAATAC TERM 4044 3932841 - 3932861 + F 93 -11.1 -4.14739 | opp_overlap 3932841 GTCAGAAGAGAAAAA GCCCCGG AGCAGTC CCGGGGC TTTTGAGGTAAATAC TERM 4045 3933002 - 3933018 + F 84 -2.9 -5.59879 | opp_overlap 3933002 ACTACCTGACAAAAA CCCGG AAAACAG TCGGG TTTTTTATATTTCTA TERM 4046 3933069 - 3933049 - f 72 -6.3 -4.34263 | overlap 3933045 3933043 3933054 3933061 TTTCAATAACATAAA TAAGATTTA AGA TAAATCTCA AATTTACGATGATAT YpsIP31758_3486 3933186 - 3933809 + | hypothetical protein TERM 4047 3934164 - 3934132 - g 79 -10 -3.90766 | CATTGATAAACATAA TCGTCAGATAGC TTACTGGGC GCTACCTGACGA TGGGCCTATCCATCA YpsIP31758_3487 3933830 - 3935107 + | GGDEF domain-containing protein YpsIP31758_3488 3935113 - 3935619 + | ompA family protein TERM 4048 3935633 - 3935654 + F 90 -10.9 -4.05926 | AACGTCCTTTATTTA CCGGTTTGC GGCT GTAAACCGG TTTCTGCCTTTATTC TERM 4049 3936571 - 3936557 - g 88 -2.1 -5.7946 | gap 1 GCTGGAACAAAAAAA TGC-CC GTCT GGCGCA AGAAGCCTCTTCTGA YpsIP31758_3489 3935802 - 3937469 + | putative ABC transporter ATP-binding protein TERM 4050 3937617 - 3937588 - T 70 -9.3 -2.88861 | opp_overlap 3937594, overlap 3937593 3937594 TAGTAGCCTGACAGA TAGAAGGGCCTGC AATC GCAGGCCTTTTTA GTCAGGGTATTTCAC TERM 4051 3937612 - 3937593 - T 78 -9.2 -3.64198 | opp_overlap 3937594, overlap 3937588 3937594 GCCTGACAGATAGAA GGGCCTGC AATC GCAGGCCT TTTTAGTCAGGGTAT TERM 4052 3937594 - 3937611 + T 100 -12.7 -4.72986 | opp_overlap 3937593 3937588 3937594 CCTGACAGATAGAAG GGCCTGC AATC GCAGGCC TTTTTAGTCAGGGTA TERM 4053 3937611 - 3937594 - T 89 -12.7 -2.78197 | opp_overlap 3937594, overlap 3937593 3937588 CCTGACAGATAGAAG GGCCTGC AATC GCAGGCC TTTTTAGTCAGGGTA YpsIP31758_3490 3938745 - 3937615 - | Fic family protein TERM 4054 3938767 - 3938795 + r 73 -8.2 -3.72695 | overlap 3938770 3938780 CTCCCAACCGGAGAG TGAGCCGATTAG CCTCA TTATTCGGCTCA TTTGGTGAGCCGAAT TERM 4055 3938770 - 3938826 + r 76 -10.9 -2.67992 | overlap 3938767 3938780 3938801 CCAACCGGAGAGTGA GCCGATTAGCCTCATTATTCGGCTCAT TTG GTGAGCCGAATAGCCAGTATATTCGGC TCATGTGATGATATC TERM 4056 3938780 - 3938816 + r 72 -9.5 -3.09289 | overlap 3938767 3938770 3938801 AGTGAGCCGATTAGC CTCATTATTCGGCTCAT TTG GTGAGCCGAATAGCCAG TATATTCGGCTCATG TERM 4057 3938801 - 3938829 + r 83 -11.9 -2.84634 | overlap 3938780 3938770 ATTCGGCTCATTTGG TGAGCCGAATA GCCAGTA TATTCGGCTCA TGTGATGATATCCAG YpsIP31758_3491 3940173 - 3938902 - | nicotinamide-nucleotide adenylyltransferase TERM 4058 3940115 - 3940131 + g 71 -2.9 -4.93547 | overlap 3940116 CTGGCCTCAGCCACC TGCTGTA AGG TGCAGCC TTTTTGCTTAATTGC TERM 4059 3940222 - 3940209 - R 71 -4.5 -4.74052 | ACTAAACAAAAATAA CACAG TATG CTGCG GGATTGGCACTATTA radA 3941714 - 3940332 - | DNA repair protein RadA serB 3942797 - 3941817 - | phosphoserine phosphatase TERM 4060 3942991 - 3942973 - H 73 -8.8 -3.51597 | overlap 3942974 AAGGGTGAATCAGAA CCGCTGCG TCA CGCAGCAA CATCAAGTATGCAGG TERM 4061 3942990 - 3942974 - H 71 -10.1 -2.70476 | overlap 3942973 AGGGTGAATCAGAAC CGCTGCG TCA CGCAGCA ACATCAAGTATGCAG YpsIP31758_3494 3943031 - 3943732 + | hypothetical protein TERM 4062 3943806 - 3943771 - T 79 -7.6 -4.31293 | overlap 3943775 TCAGAGAGGAATAAA TCAATTCAGCGGCAGA GCTC TCTACCGCTGAAGAAA GAAAAAACCGCTGGA TERM 4063 3943802 - 3943775 - T 100 -15 -3.71527 | overlap 3943771 AGAGGAATAAATCAA TTCAGCGGCAGA GCTC TCTACCGCTGAA GAAAGAAAAAACCGC deoD 3944563 - 3943844 - | purine nucleoside phosphorylase deoB 3945911 - 3944688 - | phosphopentomutase deoA 3947365 - 3946043 - | thymidine phosphorylase deoC1 3948283 - 3947486 - | deoxyribose-phosphate aldolase TERM 4064 3948764 - 3948790 + r 79 -11 -3.15544 | opp_overlap 3948786 TCTATTGGCCCCGAT TACGCTATTCGT ATC AAGAATAGCGTA TTGGTGAGAATACGC TERM 4065 3948874 - 3948895 + r 74 -10.2 -2.61383 | opp_overlap 3948874 3948873, overlap 3948873 GAATGAAGGGGAAAC GTGCCGTT CTACAA AACGGCAC CTTATACATCACAGT TERM 4066 3948895 - 3948874 - R 77 -10.9 -2.81178 | opp_overlap 3948873 3948874, overlap 3948873 GAATGAAGGGGAAAC GTGCCGTTC TACA AAACGGCAC CTTATACATCACAGT YpsIP31758_3499 3950175 - 3948904 - | NupC family nucleoside transporter TERM 4067 3949969 - 3949957 - G 74 -4.1 -4.85782 | TCCGCCAAAAATAAA TGAGA TCC CCTCA TTACCATAAGCAATA TERM 4068 3950426 - 3950452 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 3950415, overlap 3950421 3950427 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4069 3950427 - 3950453 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 3950415, overlap 3950421 3950426 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YpsIP31758_3500 3951498 - 3950710 - | TatD family hydrolase YpsIP31758_3501 3952803 - 3951535 - | patatin family phospholipase TERM 4070 3952423 - 3952405 - G 78 -5.2 -4.85129 | opp_overlap 3952406, overlap 3952406 AGCACACATTAAAAA CTCGCGCC CCT GACGCAAA TATTGTTCAGCGTGA YpsIP31758_3502 3953041 - 3952880 - | hypothetical protein TERM 4071 3953090 - 3953069 - R 72 -8 -3.82946 | opp_overlap 3953069 3953068 CCAGTTTAAAGATAA GGTGCCTG ATTAAA CAGACACC CTTTCATTTGGCTCT osmY 3953822 - 3953208 - | periplasmic protein prfC 3955739 - 3954150 - | peptide chain release factor 3 TERM 4072 3955286 - 3955310 + g 80 -9.3 -4.2461 | CATCCAGAACCTCCA TTGGATCACGA ATT TCGCGGTCCAA TTTGTTCATAAAGGT TERM 4073 3955521 - 3955547 + g 80 -6.6 -4.81851 | opp_overlap 3955512, overlap 3955506 3955505 CGGAAACTGCATTAC CGACGTGGTA ATGGAGA TACCGCGTTG TTTTTCCATTTCCAT TERM 4074 3955936 - 3955912 - R 80 -3.6 -5.25154 | gap 2, opp_overlap 3955932, overlap 3955913 AAAAAAACAATAAAA CGGCGCTATGCC ATT GGCA-A-CGCCA TCATAATGGCATCTT rimI 3956360 - 3955917 - | ribosomal-protein-alanine N-acetyltransferase TERM 4075 3956245 - 3956269 + gr 78 -4.2 -5.09895 | TTAAAATTGAGGTAC CGGTCGCC CTGATTACT GGCGAACG TTTTTTCCGTCCATG holD 3956742 - 3956305 - | DNA polymerase III subunit psi TERM 4076 3956429 - 3956412 - GH 75 -8.4 -3.87815 | opp_overlap 3956412 3956405 CCGCATCTTGATAAA GCCCAG CTAATT CTGGGC TATGTAATTGTGCAC TERM 4077 3956961 - 3956947 - g 70 -10 -3.24924 | opp_overlap 3956947 3956946, overlap 3956945 CGGTGATTTACAAGA TGCGCT GCC AGCGCA ATTTGATGCAGCCGG TERM 4078 3957774 - 3957802 + G 76 -9.5 -3.72576 | TAGCGAACTCCTTCC TGCCGTATCCTGC CTT GCTGGATGCCGCA TTTGGTAGCCACGAA YpsIP31758_3507 3956855 - 3957898 + | 16S ribosomal RNA m2G1207 methyltransferase YpsIP31758_3508 3959034 - 3958795 - | hypothetical protein TERM 4079 3958887 - 3958873 - G 82 -5.6 -5.1356 | TGGCAGTAACAAAAA GTGCCG CAA CCGCAC GTGGTACAACATGCT YpsIP31758_3509 3959376 - 3960530 + | diguanylate cyclase YpsIP31758_3510 3960892 - 3960764 - | hypothetical protein pemA 3962191 - 3961106 - | pectinesterase A TERM 4080 3963648 - 3963625 - R 100 -11 -6.06723 | TTCGTCAAAAAAAAA CAGCCCCG TGATTGAC CGGGGCTG CTGAAATTACTTTTA YpsIP31758_3512 3966774 - 3963688 - | AcrB/AcrD/AcrF family transporter TERM 4081 3964964 - 3964954 - G 76 -8.2 -3.9712 | GTAGGTCAGCATAAA GCGC ATT GCGC CCTGACCTATGGTTG TERM 4082 3965277 - 3965289 + g 78 -5.5 -4.93365 | CCGGCTTATCCGCAT CAGCT TCA GGCTG TTTTTGGTTCTGGAA YpsIP31758_3513 3967856 - 3966774 - | RND family efflux transporter MFP subunit YpsIP31758_3514 3968141 - 3967908 - | hypothetical protein TERM 4083 3968741 - 3968721 - R 100 -14 -3.67976 | GCCATTAACGTTAAA CGGCACCC ATAAA GGGTGCCG CGGCTAAACAAAAAA TERM 4084 3968842 - 3968868 + r 70 -7.2 -3.74872 | gap 1, opp_overlap 3968830, overlap 3968841 TATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCCCTGCCT YpsIP31758_3515 3970183 - 3968951 - | O-antigen polymerase domain-containing protein TERM 4085 3969350 - 3969339 - G 75 -5.8 -4.5442 | GCTTCAACCACAAAA GCAG AACG CTGC CCCATGGAGGAATTA TERM 4086 3970081 - 3970063 - G 71 -4.6 -4.59414 | TGATAATAATCAAAA CCAATGAA ACA CTCATTAG CTGATTATTCGTTGG YpsIP31758_3516 3971394 - 3970231 - | putative lipopolysaccharide heptosyltransferase III TERM 4087 3970991 - 3970979 - GH 71 -6.9 -4.15044 | GTGGGTTTTAACAAA CGGCA ATA CGCCG CAGCCCGCCATTGAT TERM 4088 3971047 - 3971083 + gH 72 -8 -3.79747 | overlap 3971048 ATGTTGTTTTTTTAG GGCGCTAAACAGTG CTTTTTCGC CACTGATTTGCGCC TTTAATCCTGCATGC TERM 4089 3971048 - 3971061 + gH 71 -4.5 -4.58663 | overlap 3971047 TGTTGTTTTTTTAGG GCGCT AAAC AGTGC TTTTTCGCCACTGAT YpsIP31758_3517 3971382 - 3971510 + | hypothetical protein TERM 4090 3971622 - 3971656 + Tr 100 -10.7 -4.29928 | gap 1, opp_overlap 3971597 ACGCAGCACGTGACG GCGGCGAGCATTGCCC CGAA GCGCAA-GCTGGCCGC TTTTCGCTATTAATT YpsIP31758_3518 3973332 - 3971740 - | autoinducer-2 (AI-2) kinase YpsIP31758_3519 3974423 - 3973503 - | Crp/Fnr family sugar-binding transcriptional regulatory TERM 4091 3975292 - 3975306 + G 78 -7.8 -4.36411 | opp_overlap 3975280 TTATGCGCGGCCTGA TGCGTG ACT CGCGCA TTTTGATCCTTGATG TERM 4092 3975846 - 3975829 - g 80 -9.1 -4.26076 | opp_overlap 3975838, overlap 3975817 TCACGGCGATGAAAA CCGCCAA TCGC CTGGCGG CGGGCTTAGTGTATT lsrA 3974826 - 3976409 + | autoinducer AI-2 ABC transporter, ATP binding protein lsrC 3976403 - 3977458 + | autoinducer AI-2 ABC transporter, permease protein LsrC lsrD 3977455 - 3978456 + | autoinducer AI-2 ABC transporter, permease protein LsrD lsrB 3978501 - 3979520 + | autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein TERM 4093 3979687 - 3979702 + G 73 -5.4 -4.56597 | gap 1, opp_overlap 3979687, overlap 3979689 GATTGGGGAATGCAA TCC-CGC CTG GCGCGGA TTTTTAACCCGAAAA TERM 4094 3979979 - 3979999 + G 81 -12.5 -3.0094 | CTGTACGGCTCAATG CCTGCGCGG TCG CCGCACAGG TGTATATCGGTACGG TERM 4095 3980426 - 3980403 - g 70 -2.4 -4.83615 | gap 1, overlap 3980409 3980410 CATTGTGCATAAAAA TGAGAATGCCG CTG CGGC-TTACCA ACTGTTCCTCCATGA YpsIP31758_3525 3979576 - 3980451 + | aldolase YpsIP31758_3526 3980516 - 3980806 + | autoinducer-2 (AI-2) modifying protein LsrG YpsIP31758_3527 3981129 - 3981620 + | hypothetical protein YpsIP31758_3528 3984258 - 3981682 - | HPr family phosphocarrier protein TERM 4096 3981989 - 3981975 - G 77 -4.2 -5.00884 | ATCCGGTGGAAAAAA GGGC TTCTCGC GCCC ACACATCCGCAGCCA TERM 4097 3982983 - 3982969 - G 71 -7.1 -4.0274 | TTCAGTACGAAACAA GCCGA TGGAT TCGGC ACCTTGATTGAAAGC TERM 4098 3984427 - 3984440 + H 78 -5.3 -4.91511 | TAATCGCCGGGAAGT TGAGA TGGC TCTCA TTTTTCTGATGACAT frwC 3984623 - 3985705 + | putative fructose-like permease EIIC subunit 2 TERM 4099 3985835 - 3985825 - f 71 -8.2 -3.51825 | overlap 3985797 TCACGTTAACCAGAA GGGG AGC CCCC AAAGTCATTGGAGTC TERM 4100 3985924 - 3985945 + F 95 -13.1 -3.15544 | overlap 3985941 TGCTAGCCCGCAGGG TGAGCCTCA AGGA TGAGGCTCA TTAGTCCCGATGAGC TERM 4101 3985941 - 3985960 + F 71 -4.3 -4.8743 | overlap 3985924 AGCCTCAAGGATGAG GCTCATT AGTCCC GATGAGC TTTGTTTATTTTAAG TERM 4102 3986056 - 3986046 - f 71 -8.2 -3.51825 | overlap 3986020 TCACGTTAACCAGAA GGGG AGC CCCC AAAGTCATTGGAGTC TERM 4103 3986145 - 3986166 + F 95 -13.1 -3.15544 | overlap 3986162 TGCTAGCCCGCAGGG TGAGCCTCA AGGA TGAGGCTCA TTAGTCCCGATGAGC frwB 3986269 - 3986589 + | putative fructose-like phosphotransferase EIIB subunit 2 YpsIP31758_3532 3986682 - 3987026 + | putative fructose-like phosphotransferase EIIB subunit 3 YpsIP31758_3531 3987894 - 3987019 - | AraC family transcriptional regulator TERM 4104 3987847 - 3987866 + g 84 -13.6 -2.55544 | opp_overlap 3987845 3987842, overlap 3987842 ATGGTGAATACTATT CGGCTCTG ATAC CAGAGCCG TCAGTTGACTGATAA YpsIP31758_3533 3988432 - 3987896 - | hypothetical protein TERM 4105 3988921 - 3988901 - H 91 -8.5 -4.652 | opp_overlap 3988900 3988905, overlap 3988905 AAATTACCCTAAAAA TAAATTTAG GTG CTAAATTTA ATATATTCCATAAAA TERM 4106 3988917 - 3988905 - H 74 -4.9 -4.87389 | opp_overlap 3988900 3988905, overlap 3988901 TACCCTAAAAATAAA TTTAG GTG CTAAA TTTAATATATTCCAT YpsIP31758_3534 3989138 - 3990334 + | hypothetical protein YpsIP31758_3535 3990363 - 3991409 + | M48 family peptidase TERM 4107 3992696 - 3992685 - g 72 -5.8 -4.42386 | opp_overlap 3992684 3992685 GCCTTACTCACAAAA CTGG GACC CCAG CTTTAAAGACAGCGA YpsIP31758_3536 3991753 - 3994344 + | type I restriction-modification system, M subunit YpsIP31758_3537 3994346 - 3995605 + | putative type I restriction-modification system, S subunit TERM 4108 3995722 - 3995704 - g 71 -3.8 -4.74453 | opp_overlap 3995708 GAAGATACTCAAAAA CAAAACCG AAG CGGATTTA CTGCAAAACTGGGCA TERM 4109 3996509 - 3996493 - g 74 -9.4 -3.61715 | opp_overlap 3996493 3996492 3996490 TAGCGCGGCCAATAA CCCCGA TCGCC TCGGGG GTTATGTGTGGCATA TERM 4110 3996738 - 3996726 - g 90 -7.7 -5.01811 | TTACCAAATTAAAAA GCAGT GCA ACTGC CGATACGTTAATTGT TERM 4111 3997051 - 3997079 + G 71 -6.7 -4.24002 | GCTACACCGCTACAG CATTGCCGATG GTATTCG CGACGGCAATG TTTTGGGCTTTGACC TERM 4112 3997658 - 3997648 - g 73 -4.6 -4.83169 | ACTTGCCCATAAAAA GCCC TAC GAGC GCATCCATACCGAGC YpsIP31758_3538 3995615 - 3998863 + | HsdR family type I site-specific deoxyribonuclease TERM 4113 3998852 - 3998887 + T 91 -8.4 -4.61482 | overlap 3998854 GTGATGGACATCCCT CCCTCAGCGTAAGT CCTGCCAC ACTTATGCTGAGTG TTCTTTTTTCAGAGG TERM 4114 3998854 - 3998885 + T 83 -9.6 -3.91465 | overlap 3998852 GATGGACATCCCTCC CTCAGCGTAAGT CCTGCCAC ACTTATGCTGAG TGTTCTTTTTTCAGA YpsIP31758_3539 3998998 - 3998876 - | hypothetical protein TERM 4115 3999054 - 3999033 - R 74 -6.5 -4.44277 | opp_overlap 3999034, overlap 3999034 GATTAAAACGCAAAA GCCCCTGTC TTTT GACAGAGGT TTGCAGTGATATAAA TERM 4116 3999034 - 3999053 + r 70 -7.8 -3.63068 | opp_overlap 3999033 3999034 ATTAAAACGCAAAAG CCCCTGTC TTTT GACAGAGG TTTGCAGTGATATAA TERM 4117 3999053 - 3999034 - R 76 -10 -3.25481 | opp_overlap 3999034, overlap 3999033 ATTAAAACGCAAAAG CCCCTGTC TTTT GACAGAGG TTTGCAGTGATATAA YpsIP31758_3540 4000379 - 3999144 - | phage integrase family site specific recombinase TERM 4118 4000563 - 4000548 - R 100 -9 -5.64274 | opp_overlap 4000546 4000548 TTAGGCATAAAAAAA GACCTC AGTT GAGGTC TATTTACATACTGTT TERM 4119 4000548 - 4000563 + r 73 -9 -3.43511 | opp_overlap 4000548, overlap 4000546 TTAGGCATAAAAAAA GACCTC AGTT GAGGTC TATTTACATACTGTT YpsIP31758_3541 4001843 - 4000767 - | putative permease TERM 4120 4001225 - 4001242 + g 75 -3.4 -5.0095 | gap 1 AATCAGATTCATCGA CCT-GCG ATAAC CGCCAGG TTTTATTGTCTTTTT YpsIP31758_3542 4002937 - 4001843 - | putative permease TERM 4121 4004683 - 4004650 - g 76 -9.5 -3.67597 | opp_overlap 4004656, overlap 4004653 GCGTTCAGGTAAGAA CAAGGGCGCGACTGG CCGG CCAGTCGCGTTGTTG TCTCAGTTCCTACTG TERM 4122 4004656 - 4004677 + G 100 -15.9 -3.90761 | opp_overlap 4004653 4004650 AGGTAAGAACAAGGG CGCGACTGG CCGG CCAGTCGCG TTGTTGTCTCAGTTC pepA 4003217 - 4004728 + | leucyl aminopeptidase TERM 4123 4004842 - 4004859 + F 95 -11.3 -3.80625 | TTGTTAGCAGTCTGA GGGCACA TTTT TGTGCCC TTTACGTTGTAGAGA holC 4004879 - 4005328 + | DNA polymerase III subunit chi valS 4005341 - 4008238 + | valyl-tRNA synthetase TERM 4124 4008265 - 4008303 + F 100 -14.7 -4.66833 | overlap 4008266 ATCAGTCAGTCGTCA CCAGGGGCCATGATAAT TATTC ACTATCATGGCCCCTGC TTTTTACCATTGCAC TERM 4125 4008266 - 4008302 + F 100 -18.2 -3.39618 | overlap 4008265 TCAGTCAGTCGTCAC CAGGGGCCATGATAAT TATTC ACTATCATGGCCCCTG CTTTTTACCATTGCA YpsIP31758_3546 4008381 - 4008884 + | acetyltransferase YpsIP31758_3547 4008934 - 4009053 + | hypothetical protein YpsIP31758_3548 4009674 - 4009243 - | hypothetical protein argF 4009885 - 4010892 + | ornithine carbamoyltransferase subunit I YpsIP31758_3550 4011613 - 4011155 - | hypothetical protein TERM 4126 4011976 - 4011950 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 4011959, overlap 4011951 4011966 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4127 4011977 - 4011951 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 4011959, overlap 4011950 4011966 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4128 4012059 - 4012075 + H 75 -5.2 -4.79352 | CAATAACCTCATCAT TATTCC TTTAC GGAATA TTTTATTATCACTAA YpsIP31758_3551 4012251 - 4013819 + | ABC dipeptide/oligopeptide/nickel transporter, periplasmic dipeptide/oligopeptide/nickel-binding protein TERM 4129 4013932 - 4013963 + G 74 -4.3 -4.94243 | opp_overlap 4013932 4013934 4013937, overlap 4013934 4013937 GTCTGTAGCATTAAA TACCACGCCGGGA ACCCCC TCCCGGCGTCATC TTTTGGTTTTTTTAC TERM 4130 4013961 - 4013934 - g 74 -9.8 -3.48024 | opp_overlap 4013934 4013932 4013937, overlap 4013932 4013937 CTGTAGCATTAAATA CCACGCCGGGAA CCCC CTCCCGGCGTCA TCTTTTGGTTTTTTT TERM 4131 4013958 - 4013937 - g 85 -13.7 -2.88215 | opp_overlap 4013937 4013934 4013932, overlap 4013934 4013932 TAGCATTAAATACCA CGCCGGGAA CCCC CTCCCGGCG TCATCTTTTGGTTTT TERM 4132 4013937 - 4013958 + G 83 -13 -3.01018 | opp_overlap 4013934 4013932 4013937, overlap 4013934 4013932 TAGCATTAAATACCA CGCCGGGA ACCCCC TCCCGGCG TCATCTTTTGGTTTT YpsIP31758_3552 4013915 - 4014964 + | ABC dipeptide/oligopeptide/nickel transporter, permease protein YpsIP31758_3553 4014983 - 4015819 + | ABC dipeptide/oligopeptide/nickel transporter, permease protein TERM 4133 4016237 - 4016204 - g 82 -11.7 -3.28712 | opp_overlap 4016206, overlap 4016206 TCTGTTGCTGCATAA CACCCTTTCAAGCGC TGAT GCGCATGAACGGGTA TTAAATGCACTGGCC TERM 4134 4016206 - 4016235 + G 81 -12.1 -3.09327 | opp_overlap 4016204 4016206 TGTTGCTGCATAACA CCCTTTCAAGCGC TGAT GCGCATGAACGGG TATTAAATGCACTGG TERM 4135 4016235 - 4016206 - g 82 -12.1 -3.21276 | opp_overlap 4016206, overlap 4016204 TGTTGCTGCATAACA CCCTTTCAAGCGC TGAT GCGCATGAACGGG TATTAAATGCACTGG YpsIP31758_3554 4015812 - 4016690 + | ABC dipeptide/oligopeptide/nickel transporter, ATP binding protein YpsIP31758_3555 4016677 - 4017393 + | ABC dipeptide/oligopeptide/nickel transporter, ATP binding protein TERM 4136 4017598 - 4017585 - f 75 -5.3 -4.82901 | CCCTCGCCATAAAAA TCACA ATTC TGTGA CGTACTGAACAGGGA TERM 4137 4017758 - 4017781 + F 78 -10.2 -3.24245 | overlap 4017761 AGCATCCACATCCCC CTCGCAGCCC TGAT GTGCTGCGGG TTGCCTTGTGGATAA TERM 4138 4018799 - 4018789 - g 77 -6.8 -4.56597 | GGGCTTGGGTAAAAA CCGT AAA ACGG CGGTATTCCCAAAAC nrdD 4017827 - 4019965 + | anaerobic ribonucleoside triphosphate reductase TERM 4139 4020077 - 4020048 - f 74 -9.2 -3.33492 | GTAGGTAGGCGACAA CCTCAGGCCTCG TCAATG CGAGGCCTGCTG ATGGGCTGAGTCACC nrdG 4020172 - 4020606 + | anaerobic ribonucleotide reductase-activating protein YpsIP31758_3558 4020786 - 4020652 - | hypothetical protein phnF 4020966 - 4021691 + | putative transcriptional regulator TERM 4140 4021849 - 4021867 + G 85 -8 -4.79352 | overlap 4021850 AATTGCAGGCGCGGA TGGGGGCC ACC GGCCGCCG TTTTATTCTCGGTGA TERM 4141 4021850 - 4021866 + G 71 -9.3 -3.46888 | overlap 4021849 ATTGCAGGCGCGGAT GGGGGCC ACC GGCCGCC GTTTTATTCTCGGTG phnG 4021692 - 4022168 + | phosphonate metabolism protein PhnG phnH 4022168 - 4022794 + | carbon-phosphorus lyase complex subunit phnI 4022794 - 4023954 + | phosphonate metabolism protein PhnI phnJ 4023947 - 4024828 + | phosphonate metabolism protein PhnJ phnK 4024831 - 4025619 + | phosphonates transport ATP-binding protein TERM 4142 4025798 - 4025767 - f 100 -12.4 -3.5393 | AGGACGTCGGCGAAA GGCGTCAACCTACA GGGA TGTAGGTTAAAGCC AGCCCGTAAAGCCGA TERM 4143 4025843 - 4025831 - f 71 -9.1 -3.30605 | opp_overlap 4025829 AGATGAAGAAGGGAA CCCAC GTA GTGGG CGTTGGATGTTGAGC TERM 4144 4025871 - 4025896 + F 81 -11.9 -2.52543 | gap 1, opp_overlap 4025863 4025862 AGCAAAGCCGCAGGT GCAGGAGGGGCG GCC TGCCC-TCCTGC TCGATTGCAGGCACT TERM 4145 4026622 - 4026611 - g 71 -7.2 -4.02051 | opp_overlap 4026611 4026610 4026619 GATGAAGCTAAACAA CGCG GTGC CGCG ATTGTCGGGATTTTC phnL 4026008 - 4026727 + | phosphonate C-P lyase system protein PhnL phnM 4026724 - 4027860 + | phosphonate metabolism protein PhnM YpsIP31758_3567 4027860 - 4028441 + | ribose 1,5-bisphosphokinase phnP 4028432 - 4029184 + | carbon-phosphorus lyase complex accessory protein YpsIP31758_3569 4029835 - 4029197 - | hypothetical protein YpsIP31758_3570 4030430 - 4029987 - | hypothetical protein YpsIP31758_3571 4031725 - 4030559 - | hypothetical protein TERM 4146 4031617 - 4031603 - G 74 -9.2 -3.67597 | CGCTTCACTCAATAA CCGACG TAA CGCCGG TTGCAGAGGTGAAAA YpsIP31758_3572 4032834 - 4031740 - | carbohydrate ABC transporter ATP-binding protein TERM 4147 4031879 - 4031869 - G 71 -8.2 -3.77209 | overlap 4031870 AAATACAGAGGTAAA GCGG CCC CCGC CCGTGCTGCAAAAGA TERM 4148 4032482 - 4032470 - G 71 -9.1 -3.5393 | opp_overlap 4032468 AGCAGCGCTTGTAAA CCGAG CAA CTCGG CGGTTGATTCGACCT YpsIP31758_3573 4033685 - 4032846 - | carbohydrate ABC transporter permease YpsIP31758_3574 4034588 - 4033704 - | carbohydrate ABC transporter permease TERM 4149 4034355 - 4034331 - G 73 -8.5 -3.95653 | AAAGAAGGCGATAAA CGCGGCCACCA CCA TGGTGACCAGG ACATATAACAACGTG YpsIP31758_3575 4035909 - 4034596 - | carbohydrate ABC transporter periplasmic-binding protein YpsIP31758_3576 4036473 - 4037705 + | hypothetical protein TERM 4150 4039572 - 4039586 + G 75 -5.6 -4.75174 | overlap 4039574 ACCAACAACCAGCAG CTCAGG TCA CCTGTG TTTTTGACTTGAATG YpsIP31758_3577 4037729 - 4039747 + | heparinase II/III-like family protein TERM 4151 4040227 - 4040211 - g 93 -8 -5.32396 | ACAGCAAAAAGAAAA GCTGGT GATTG ACCAGC CGAGGTTATTGACAA YpsIP31758_3578 4039975 - 4040262 + | GIY-YIG nuclease superfamily protein YpsIP31758_3579 4040940 - 4040437 - | acetyltransferase YpsIP31758_3580 4041455 - 4040934 - | SCP-2 sterol transfer family protein YpsIP31758_3581 4041536 - 4041661 + | hypothetical protein TERM 4152 4041814 - 4041840 + G 71 -7.3 -4.11295 | gap 1, opp_overlap 4041813 4041812, overlap 4041832 TACCTGCATTAAAGG CCGCAATCGACA ATGG TGCCGAT-GCGG TTTATATCGGTTTGA YpsIP31758_3582 4041771 - 4042766 + | U32 family peptidase YpsIP31758_3583 4042778 - 4043656 + | U32 family peptidase TERM 4153 4043672 - 4043716 + T 100 -16 -4.183 | gap 1, opp_overlap 4043679 4043682, overlap 4043679 ACGGCCTTGCCTTAT CAAGTAATAACAGGGAGGTCA TTGC TGGCCTCCCTGTTATT-CATG TTTATTAACGCTTAA TERM 4154 4043710 - 4043679 - T 100 -16 -3.39895 | opp_overlap 4043672 4043679, overlap 4043682 TGCCTTATCAAGTAA TAACAGGGAGGTCA TTGC TGGCCTCCCTGTTA TTCATGTTTATTAAC TERM 4155 4043679 - 4043710 + T 100 -18.2 -3.54382 | opp_overlap 4043679 4043682, overlap 4043672 TGCCTTATCAAGTAA TAACAGGGAGGTCA TTGC TGGCCTCCCTGTTA TTCATGTTTATTAAC TERM 4156 4043707 - 4043682 - T 100 -13.3 -3.83844 | opp_overlap 4043679 4043672, overlap 4043679 CTTATCAAGTAATAA CAGGGAGGTCA TTGC TGGCCTCCCTG TTATTCATGTTTATT oprM 4045203 - 4043797 - | outer membrane protein oprM TERM 4157 4044755 - 4044773 + g 80 -3 -5.41143 | opp_overlap 4044755 4044758, overlap 4044756 AGATAGGTTTCAAAT TCAGCATG AGA CAAGCTGC TTTTTTTACCAAATA TERM 4158 4044926 - 4044960 + g 88 -13.6 -3.1247 | gap 1 ACCGTTGGTAGCTGG GCGGCCCGTTGCACA CCATAT TGCGCA-CGGGCCGC TTCGATATCGGCAAT YpsIP31758_3585 4048330 - 4045205 - | RND efflux transporter TERM 4159 4046664 - 4046651 - G 75 -5.9 -4.56597 | TTCGGTCGGTAAAAA GCCCG TTGG CAGGC GAATAAACAACACAC YpsIP31758_3586 4049494 - 4048334 - | RND family efflux transporter MFP subunit TERM 4160 4049027 - 4049037 + g 73 -2.4 -5.00884 | opp_overlap 4049014 GATACGCGCCGTTTC CAGC GCA GCAG TTTTTTCGGCCACAT TERM 4161 4049079 - 4049111 + g 70 -2 -4.9138 | TGCTGATAGCTGGTT TGG-GCGTCATCAGCA TCT TGCTGC-GACACACCA TTTTCTTTGGCTAAT YpsIP31758_3587 4050002 - 4051057 + | hypothetical protein TERM 4162 4051109 - 4051094 - T 100 -10.4 -5.65177 | opp_overlap 4051094 ACAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTGAGGTTGTTGAC TERM 4163 4051094 - 4051109 + T 82 -10.4 -3.72051 | opp_overlap 4051094 ACAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTGAGGTTGTTGAC TERM 4164 4051189 - 4051215 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 4051178, overlap 4051184 4051190 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4165 4051190 - 4051216 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 4051178, overlap 4051184 4051189 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4166 4051280 - 4051295 + T 100 -10.4 -4.82855 | TGTCAGCAGTCTGAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC YpsIP31758_3588 4051623 - 4051312 - | DNA-binding protein YpsIP31758_3589 4052231 - 4052058 - | hypothetical protein TERM 4167 4052199 - 4052214 + g 100 -10.4 -4.82855 | opp_overlap 4052199 ATAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC TERM 4168 4052214 - 4052199 - G 100 -10.4 -5.65177 | opp_overlap 4052199 ATAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC YpsIP31758_3590 4054245 - 4052251 - | ATP-dependent RNA helicase DeaD TERM 4169 4053454 - 4053472 + g 71 -3.8 -4.7497 | ACGCTCAAGGGCTTC TGCTACTT CCA AGGTCGCA TTTTTGGTACGTACG nlpI 4055316 - 4054432 - | lipoprotein NlpI TERM 4170 4054552 - 4054564 + g 74 -9.1 -3.78934 | opp_overlap 4054551 CGTCAGTTTGAACAG CACCG AAG CGGTG TTCTTGTCCCCCAGA TERM 4171 4055429 - 4055398 - R 100 -13.8 -3.48276 | opp_overlap 4055395 CCGCCCCTGAGATAA CACAGCCCCTTACC GATG AGCAAGGAGCTGTG GAATGACTTAATTAC TERM 4172 4055448 - 4055485 + r 100 -11.3 -4.0274 | TGACTTAATTACTCT GCTGCTGCTTCTGGTGC TTCT GCGTCAGGAGTAGTGGC TTCTTTGATGCTCAG pnp 4057558 - 4055441 - | polynucleotide phosphorylase/polyadenylase TERM 4173 4057784 - 4057800 + r 100 -13.7 -3.86015 | opp_overlap 4057784 ACTTCTTAGAAAAAA GGGGCCA ACT TGGCCCC TTTCTCCCGAAACTC TERM 4174 4057800 - 4057784 - R 100 -13.7 -5.24531 | opp_overlap 4057784 ACTTCTTAGAAAAAA GGGGCCA ACT TGGCCCC TTTCTCCCGAAACTC rpsO 4058091 - 4057822 - | 30S ribosomal protein S15 TERM 4175 4058199 - 4058216 + r 91 -6.9 -5.56263 | opp_overlap 4058202, overlap 4058202 TCGCGGGATCGCAAG GCAGGCC GTGT GGCCTAC TTTTTATTTTCTACT truB 4059187 - 4058213 - | tRNA pseudouridine synthase B rbfA 4059597 - 4059187 - | ribosome-binding factor A TERM 4176 4059611 - 4059642 + r 81 -10.8 -3.36515 | opp_overlap 4059614, overlap 4059609 4059612 ATTTGGATTCTCCAG ACAGTTTGGGGGGC CAAG GCCCCCCAAATGGA TATTTGCAAATCAGA TERM 4177 4059612 - 4059641 + r 95 -14.3 -2.61695 | opp_overlap 4059614, overlap 4059611 4059609 TTTGGATTCTCCAGA CAGTTTGGGGGGC CAAG GCCCCCCAAATGG ATATTTGCAAATCAG TERM 4178 4059639 - 4059614 - R 93 -13.3 -2.87931 | opp_overlap 4059612 4059611 4059609 TGGATTCTCCAGACA GTTTGGGGGGC CAAG GCCCCCCAAAT GGATATTTGCAAATC YpsIP31758_3596 4062341 - 4059663 - | translation initiation factor IF-2 TERM 4179 4061832 - 4061845 + g 77 -3.1 -5.19261 | ACGTGCTTTATCGGT CTGAG CTGG CTTAG TTTTTTCGTCGGTTT nusA 4063853 - 4062366 - | transcription elongation factor NusA YpsIP31758_3598 4064339 - 4063875 - | hypothetical protein TERM 4180 4064365 - 4064352 - R 100 -8.1 -5.80248 | CAAGACATAAAAAAA GGGCT TAAT AGCCC AGTGATTCTGCTGTC TERM 4181 4064415 - 4064387 - R 100 -12.5 -3.90744 | opp_overlap 4064393 4064394, overlap 4064394 TCTGCTGTCAAATAA CAAAAAACCCCGA AAT TCGGGGCTTTATG CAACTGGACCCTGTT TERM 4182 4064393 - 4064409 + r 72 -7.9 -3.87815 | opp_overlap 4064387 4064394, overlap 4064394 GTCAAATAACAAAAA ACCCCGA AAT TCGGGGC TTTATGCAACTGGAC TERM 4183 4064394 - 4064408 + r 83 -11.4 -2.92475 | opp_overlap 4064387 4064394, overlap 4064393 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 4184 4064408 - 4064394 - R 100 -11.4 -5.72254 | opp_overlap 4064394 4064393, overlap 4064387 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 4185 4064432 - 4064444 + r 76 -10.5 -3.06501 | AACTGGACCCTGTTT GCCGC AAA GCGGC TTCGGTGCAACTCTC TERM 4186 4064544 - 4064530 - R 100 -7.2 -5.79526 | opp_overlap 4064532 ACATTTGAAAAAAAA CACTTT AGG AAAGTG GTTGCGGGGGCCGGA TERM 4187 4064779 - 4064809 + r 74 -9.9 -3.08603 | opp_overlap 4064777, overlap 4064778 GGCACTGATTCAACT GGTTGTTTTTACT GTCCA AGTAACAACAACC CTTTTAAAACTCTTT YpsIP31758_3599 4065194 - 4064859 - | preprotein translocase subunit SecG TERM 4188 4065384 - 4065404 + r 83 -11.1 -3.53761 | TCAGCGTAATTTCTT GGGGAAGAG TGC CTCTCCCCC TTTAAAAAAGGGTTA glmM 4066757 - 4065417 - | phosphoglucosamine mutase TERM 4189 4065868 - 4065858 - G 71 -6.8 -4.24342 | opp_overlap 4065857 TTTGGCACGAACAAA TGGG ATA CCCA GATCTTTCAGGGCTA folP 4067600 - 4066767 - | dihydropteroate synthase TERM 4190 4067659 - 4067676 + r 90 -11.3 -3.71284 | opp_overlap 4067659 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA TERM 4191 4067676 - 4067659 - R 100 -11.3 -5.84381 | opp_overlap 4067659 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA hflB 4069654 - 4067720 - | ATP-dependent metalloprotease TERM 4192 4069566 - 4069548 - G 73 -8.2 -3.83205 | ACGTCGGACATGAAA GTAGAGTA ATC CACTCTAC GGCCATTCGATTCGC rrmJ 4070340 - 4069711 - | 23S rRNA methyltransferase J YpsIP31758_3604 4070487 - 4070780 + | hypothetical protein TERM 4193 4070802 - 4070812 + T 74 -6.8 -4.35483 | opp_overlap 4070801 4070802 TTGTTTTAGAGAAAG GTGC CAT GCAC TTTGTTCTGATAAAA TERM 4194 4070822 - 4070847 + T 100 -10.5 -4.88405 | opp_overlap 4070828, overlap 4070823 ATGCACTTTGTTCTG ATAAAAGGCCG CTTG CGGCCTTTTAC TTTTCTTTACAACTT TERM 4195 4070823 - 4070846 + T 100 -14 -3.51958 | opp_overlap 4070828, overlap 4070822 TGCACTTTGTTCTGA TAAAAGGCCG CTTG CGGCCTTTTA CTTTTCTTTACAACT TERM 4196 4070841 - 4070828 - T 88 -9.5 -4.36914 | opp_overlap 4070823 4070822 TTTGTTCTGATAAAA GGCCG CTTG CGGCC TTTTACTTTTCTTTA greA 4071384 - 4070908 - | transcription elongation factor GreA TERM 4197 4071235 - 4071250 + g 74 -4 -4.88918 | gap 1, overlap 4071227 TTGTTGCTCACGGGC TGCGTGA TAT TC-CGCA TTTTCTTTCAAGTCG TERM 4198 4072591 - 4072572 - g 73 -2.2 -5.03715 | gap 1 ATCATGCTGAAAAAA TCAGACAAT ATG ATCG-CTGA CACCGTCTTCAGAAC dacB 4071642 - 4073090 + | D-alanyl-D-alanine carboxypeptidase/endopeptidase basR 4073096 - 4073758 + | DNA-binding transcriptional regulator BasR basS 4073755 - 4074822 + | sensor protein BasS/PmrB TERM 4199 4074895 - 4074864 - T 100 -9.5 -5.0133 | CACCCTGCCAAAAAA TAAGGGCCACCAC GAAAAA ATGGCAGCCCTTA TTCAAAGAATAACCG YpsIP31758_3609 4076089 - 4074917 - | GTPase ObgE TERM 4200 4076113 - 4076138 + r 79 -6.9 -4.62441 | gap 1, opp_overlap 4076109, overlap 4076113 TCCGTAAATCATTCA CC-GGCTGCTTT TGC AAAGCAACCAGG TTTATTTCTGTCCGA YpsIP31758_3610 4077076 - 4076090 - | integral membrane protein TERM 4201 4077135 - 4077113 - R 100 -12 -4.84529 | opp_overlap 4077113 CCAGAAATGTAAAAA GCCCCGCAAC GAA ATTGCAGGGC TTACATCTATTTACA rpmA 4077421 - 4077164 - | 50S ribosomal protein L27 rplU 4077752 - 4077441 - | 50S ribosomal protein L21 ispB 4078012 - 4078983 + | octaprenyl diphosphate synthase TERM 4202 4079029 - 4079011 - T 89 -10.3 -3.96224 | opp_overlap 4079011 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG TERM 4203 4079011 - 4079029 + T 89 -10.3 -3.93236 | opp_overlap 4079011 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG YpsIP31758_3614 4079427 - 4079080 - | hypothetical protein TERM 4204 4079478 - 4079468 - H 73 -2.6 -5.16969 | GACACAAAAAAGAAA TTTT TAG AAAA CATTTAAATTTTTTG sfsB 4079611 - 4079886 + | sugar fermentation stimulation protein B TERM 4205 4079984 - 4080016 + T 95 -7.8 -5.08178 | opp_overlap 4079984 ATCATTACAATATCA GGGGCTACTG TTCGTACTCTTTT CAGTAGCCCC TTTTTATCTCTATAT TERM 4206 4080270 - 4080255 - T 74 -10.4 -2.59431 | overlap 4080251 GCCTCGCAGAAGCGA GGCCCA TGGA TGGGCC GAGTAACGCTTGCAG mdh 4081258 - 4080320 - | malate dehydrogenase argR 4081722 - 4082192 + | arginine repressor TERM 4207 4082239 - 4082221 - f 75 -7.4 -4.3129 | opp_overlap 4082221 CACCGAGCAGTAAAA TGCGGC CTTATGT GCCGCA TTATCTCACCCTCGC YpsIP31758_3618 4082581 - 4082844 + | hypothetical protein YpsIP31758_3619 4083053 - 4082847 - | hypothetical protein TERM 4208 4082948 - 4082974 + g 71 -10.1 -2.88849 | gap 1, opp_overlap 4082937, overlap 4082943 4082949 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4209 4082949 - 4082975 + g 82 -10.1 -3.82218 | gap 1, opp_overlap 4082937, overlap 4082943 4082948 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4210 4083038 - 4083061 + g 81 -9.6 -4.12188 | overlap 4083040 TTGTCAGCAGTCTGC AATGCCCCAT TAAC ATGGGGCATA TTTTCAAGATGATGA TERM 4211 4083040 - 4083059 + g 88 -12.2 -3.6581 | overlap 4083038 GTCAGCAGTCTGCAA TGCCCCAT TAAC ATGGGGCA TATTTTCAAGATGAT mpl 4084525 - 4083140 - | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase TERM 4212 4084971 - 4084981 + G 75 -5.4 -4.72272 | opp_overlap 4084971 4084969 CTCCGAAGAAGAAGA TGAC ATT GTCA TTTTTGATGGCGGAA TERM 4213 4085660 - 4085650 - g 73 -5.4 -4.63218 | TTCGTGGGAACAAAA TCCA TGG TGGA AGATGCGGAAGGGTT fbp 4084696 - 4085709 + | fructose-1,6-bisphosphatase TERM 4214 4085749 - 4085769 + F 100 -11.1 -5.72622 | opp_overlap 4085741 4085749 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC TERM 4215 4085769 - 4085749 - f 100 -13.3 -3.40836 | opp_overlap 4085749, overlap 4085741 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC TERM 4216 4085811 - 4085794 - f 86 -7.7 -4.72029 | opp_overlap 4085796, overlap 4085789 TCTAACGGAATAAAA TAGCCCG ACTT CAGGCTA TCTCAACGTCATCTG ppa 4085909 - 4086436 + | inorganic pyrophosphatase TERM 4217 4086512 - 4086461 - T 100 -7.2 -5.60993 | gap 1, opp_overlap 4086461, overlap 4086479 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 4218 4086461 - 4086512 + T 100 -9.4 -5.84381 | gap 1, opp_overlap 4086461 4086479 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 4219 4086495 - 4086479 - T 73 -10.1 -3.04144 | opp_overlap 4086461, overlap 4086461 CGCCTATCGTGAACA GGCCCCA AAA TAGGGCC GTTTACCTTGTGCGG YpsIP31758_3623 4086891 - 4086535 - | hypothetical protein YpsIP31758_3624 4090832 - 4086894 - | hypothetical protein YpsIP31758_3625 4092565 - 4090829 - | OMP85 family outer membrane protein TERM 4220 4093355 - 4093329 - g 83 -7.3 -4.68424 | CAAGCCATGGAAAAA GCCGGTGATCA ACGGG TGATTACCAGC GAAATTACGGTTGCC msrA 4092840 - 4093478 + | methionine sulfoxide reductase A TERM 4221 4094407 - 4094422 + G 73 -7.6 -4.12738 | CCTTCCTCCATGACT TCACGT GAAA ACGTGA TTTACTTTGATCTAC YpsIP31758_3627 4093756 - 4095087 + | CBS/transporter associated domain-containing protein TERM 4222 4095124 - 4095149 + T 77 -10.4 -3.14468 | opp_overlap 4095127, overlap 4095127 TGATCACGGTAAACA TAACGGCCCC TGAGTT GGGGCCGTGA TTAAATCTGCTCAGG TERM 4223 4095127 - 4095146 + T 83 -12.1 -2.77658 | opp_overlap 4095127, overlap 4095124 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC TERM 4224 4095146 - 4095127 - T 100 -12.1 -3.82946 | opp_overlap 4095127 4095124 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC YpsIP31758_3628 4095407 - 4095195 - | hypothetical protein TERM 4225 4096289 - 4096261 - g 95 -15.3 -2.84812 | opp_overlap 4096259 4096259, overlap 4096283 ACTGACATCAGCAGA GGTGCAGCAGGTC ATC GACCAACTGCACC AACTTGTGCAGCAAT YpsIP31758_3629 4095743 - 4096306 + | hypothetical protein cysQ 4097049 - 4096309 - | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase TERM 4226 4097319 - 4097290 - H 76 -9.5 -3.49169 | opp_overlap 4097288, overlap 4097288 TGAAGACTAATAATA TTCCTGATAAATA GCCA TATTTGTCAGGAA AGTACTTATAAAATC cpdB 4097502 - 4099472 + | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 4227 4099573 - 4099541 - f 76 -9.4 -3.47573 | opp_overlap 4099541 4099548 GGAGTTATATCACAA TCTATAACATGTAT TTATT ATGCATGTTATAGA TGTATAATTACTCAA TERM 4228 4099541 - 4099573 + F 83 -11.6 -3.02096 | opp_overlap 4099541, overlap 4099548 GGAGTTATATCACAA TCTATAACATGTAT TTATT ATGCATGTTATAGA TGTATAATTACTCAA YpsIP31758_3632 4099601 - 4100266 + | cell morphogenesis/cell wall metabolism regulator TERM 4229 4100346 - 4100314 - T 100 -19.3 -4.44046 | opp_overlap 4100321, overlap 4100315 CTTATCGTAAATAAA CGCCAAAGGACGACA CCC TGTCGCCCTTTGGCA TAATCGGTACCAAGG TERM 4230 4100345 - 4100315 - T 100 -20.6 -3.25946 | opp_overlap 4100321, overlap 4100314 TTATCGTAAATAAAC GCCAAAGGACGACA CCC TGTCGCCCTTTGGC ATAATCGGTACCAAG TERM 4231 4100321 - 4100339 + T 75 -8.8 -3.62275 | opp_overlap 4100315 4100314 TAAATAAACGCCAAA GGACGACA CCC TGTCGCCC TTTGGCATAATCGGT YpsIP31758_3633 4100984 - 4100364 - | peptidyl-prolyl cis-trans isomerase YpsIP31758_3634 4101333 - 4102073 + | opacity-associated protein A YpsIP31758_3635 4102213 - 4102668 + | hypothetical protein TERM 4232 4102713 - 4102685 - T 100 -14 -3.29312 | opp_overlap 4102690, overlap 4102690 ACCGATAACCAAAAG CAAAACGCCAGC ACTAG GCTGGCGTTTTA ACAGGTTACAGCCGC TERM 4233 4102690 - 4102708 + T 100 -11.7 -4.11484 | opp_overlap 4102685 4102690 TAACCAAAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA TERM 4234 4102708 - 4102690 - T 100 -11.7 -4.72729 | opp_overlap 4102690, overlap 4102685 TAACCAAAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA rplI 4103186 - 4102734 - | 50S ribosomal protein L9 rpsR 4103453 - 4103226 - | 30S ribosomal protein S18 priB 4103775 - 4103458 - | primosomal replication protein N rpsF 4104176 - 4103784 - | 30S ribosomal protein S6 TERM 4235 4103831 - 4103856 + g 71 -9.1 -3.50832 | gap 1, overlap 4103827 4103830 CATTGGCTTCTGACG CGAA-GTCGTGA CGC TCACGGCGTTCG TCTTTCGCTTTAACC YpsIP31758_3640 4105292 - 4104543 - | esterase YpsIP31758_3641 4105580 - 4105452 - | hypothetical protein YpsIP31758_3642 4105483 - 4105794 + | putative lipoprotein YpsIP31758_3643 4107509 - 4105866 - | isovaleryl CoA dehydrogenase TERM 4236 4107670 - 4107649 - RH 71 -3 -5.08088 | opp_overlap 4107650, overlap 4107650 AATTCCCAACAAAAA GCCAACAT ACAAAG ATGTTGGT TTGAGGTTATTGACA TERM 4237 4107749 - 4107775 + rH 72 -10.1 -2.88849 | gap 1, opp_overlap 4107738, overlap 4107744 4107750 ACATCCACGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4238 4107750 - 4107776 + rH 84 -10.1 -3.82218 | gap 1, opp_overlap 4107738, overlap 4107744 4107749 CATCCACGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4239 4107839 - 4107860 + rH 75 -8.8 -3.60098 | TTGTCAGCAGTCTGA GCCAACAT ACAAAG ATGTTGGC TTTAGGCTGCGGAGT YpsIP31758_3644 4108657 - 4107917 - | 23S rRNA (guanosine-2'-O-)-methyltransferase TERM 4240 4108741 - 4108717 - gR 74 -10 -3.08072 | gap 1 AATAATTAAATTATA TG-CGGGCGAC AAAA GCCGCCCGGCA AGTAGCACACCACCA YpsIP31758_3645 4108631 - 4108774 + | hypothetical protein rnr 4111309 - 4108775 - | exoribonuclease R TERM 4241 4108964 - 4108978 + g 100 -9.2 -4.82901 | GTTTACCGGTTTTTT CGCCCG ACG TGGGCG TTTTTGTCCACCCGC TERM 4242 4109906 - 4109895 - G 76 -7.2 -4.36914 | opp_overlap 4109894 TGTTTTTCCACAAAA CGCG CCGC CGCG ATATTCGCCAGAATC TERM 4243 4111580 - 4111549 - R 84 -5.1 -5.30155 | overlap 4111553 TTATTAAGTAAAAAA CCTACTCAACAAG TAATAG CTTGTAGAGCGGG GAATTATCTTTAACC nsrR 4111975 - 4111550 - | transcriptional repressor NsrR TERM 4244 4112277 - 4112248 - R 100 -15.9 -2.80816 | opp_overlap 4112248 4112251 4112255, overlap 4112251 4112255 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4245 4112248 - 4112277 + r 100 -13.7 -3.53224 | opp_overlap 4112248 4112251 4112255, overlap 4112251 4112255 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4246 4112274 - 4112251 - R 91 -11.8 -3.55447 | opp_overlap 4112248 4112251 4112255, overlap 4112248 4112255 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4247 4112251 - 4112274 + r 81 -9.6 -3.90744 | opp_overlap 4112251 4112248 4112255, overlap 4112248 4112255 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4248 4112270 - 4112255 - R 87 -8.2 -4.41114 | opp_overlap 4112251 4112248 4112255, overlap 4112251 4112248 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC TERM 4249 4112255 - 4112270 + r 73 -6 -4.56978 | opp_overlap 4112255 4112251 4112248, overlap 4112251 4112248 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC purA 4113662 - 4112364 - | adenylosuccinate synthetase TERM 4250 4112918 - 4112934 + g 72 -10.1 -3.06796 | overlap 4112920 CAGAGCCTGTCGCTA CGCCACC CGC GGTGGTG TTAGATGAGGTGACA TERM 4251 4113150 - 4113173 + g 79 -10.4 -3.67976 | opp_overlap 4113143, overlap 4113144 4113154 GTAATGCACCAACTG GAAGTTGTGG TATT CCACAATTTC TTTCAGCTTGATAGC TERM 4252 4113154 - 4113169 + g 78 -7.6 -4.46233 | opp_overlap 4113143, overlap 4113144 4113150 TGCACCAACTGGAAG TTGTGG TATT CCACAA TTTCTTTCAGCTTGA TERM 4253 4113292 - 4113302 + g 77 -6.8 -4.57341 | GTACCGATAGCTTTT GCAC CAC GTGC TTTTTCACGCGCATT YpsIP31758_3649 4114070 - 4113762 - | hypothetical protein TERM 4254 4114020 - 4114002 - G 85 -9.5 -4.43213 | TTCAACACATGAAAA GGCCCGC ACTAG ACGGGCC TCGGTGTTACGTTCA hflC 4115138 - 4114134 - | FtsH protease regulator HflC hflK 4116404 - 4115142 - | FtsH protease regulator HflK TERM 4255 4116232 - 4116245 + g 76 -2.3 -5.19261 | CCGCTACCTTTGCCA CCGAG GCTA CTCAG TTTTTTGCTCAGTTT hflX 4117931 - 4116645 - | putative GTPase HflX hfq 4118335 - 4118030 - | RNA-binding protein Hfq miaA 4119393 - 4118452 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 4256 4118892 - 4118874 - G 100 -3.9 -6.23545 | gap 1, opp_overlap 4118881 4118882, overlap 4118876 CTGAAATAAAAAAAA CT-TCCAG TGCT CTGGAGAG CCTTTGGGGATCATT mutL 4121293 - 4119386 - | DNA mismatch repair protein YpsIP31758_3656 4123090 - 4121309 - | N-acetylmuramoyl-L-alanine amidase TERM 4257 4121506 - 4121520 + g 75 -11.4 -2.72511 | overlap 4121505 CTGCCGTTACCGTAC TGCCCG ACG CGGGCA CTTTCAACCGCTGGC TERM 4258 4122753 - 4122777 + g 74 -2.8 -5.04601 | gap 1 ACCGTGTAGTTATTG CCCG-ACTGTT GGGT GACAGCACGGG TTTTTACTTTCTGCG TERM 4259 4122802 - 4122816 + g 72 -5.7 -4.36433 | TCTGCGTCAGTTCCA GTACC AGGCG GGTAC TTTGTTCATCTTTCG YpsIP31758_3657 4123700 - 4123230 - | putative ATPase YpsIP31758_3658 4125225 - 4123711 - | hypothetical protein TERM 4260 4124169 - 4124181 + gH 80 -9.1 -3.97602 | TAAGTGCATCCGCAT CCCAC AAG GTGGG TTTATCACTCTGTTG TERM 4261 4124490 - 4124459 - GH 71 -9.3 -2.93348 | CCCACCAACAGCAGA CGCCCATGATCCC CTTTAT GGGCACACGGGCG GCGAGGTTTCAGCCA TERM 4262 4125300 - 4125318 + Gr 71 -8.2 -3.53012 | opp_overlap 4125299 TAGGTTTCCAGCAAG TCGGTATT TGC GATACCGA TTTGACGGCGGAAGA TERM 4263 4125396 - 4125378 - gR 82 -10.3 -3.59087 | AATATCATGGCGAAA TGGCGTG GATGG CACGCCA CGGTATGCTGCGTGC TERM 4264 4125522 - 4125505 - gR 75 -8.5 -3.86202 | opp_overlap 4125508, overlap 4125508 TGCCAGTACATTAAA TAACCCA GAAT TGGGTTA TGTCAGCCGCTATGC YpsIP31758_3660 4125224 - 4126459 + | iron-sulfur cluster-binding protein YpsIP31758_3659 4126555 - 4126442 - | hypothetical protein TERM 4265 4126544 - 4126525 - G 85 -2.9 -5.69262 | gap 1 GCATAAAAATAAAAA TGC-CTTG GCAAT CAAGTGCA AAAAAAAGCACAAGT TERM 4266 4126804 - 4126820 + r 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4267 4126947 - 4126963 + r 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4268 4126995 - 4127025 + r 89 -7 -5.40464 | overlap 4126996 CTATTCCCGCGTCGC CTGTATAAATACCC ATT GGTTATTTATACAC TTTTTATTTCTGATG TERM 4269 4126996 - 4127024 + r 86 -10.5 -3.82652 | overlap 4126995 TATTCCCGCGTCGCC TGTATAAATACCC ATT GGTTATTTATACA CTTTTTATTTCTGAT TERM 4270 4127114 - 4127130 + r 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4271 4127190 - 4127205 + r 70 -7.6 -3.73647 | TGTACTAAATCTGTC TTCGCA TACT TGCGAA TTCTTCATCGGTACG TERM 4272 4127445 - 4127428 - R 77 -6.3 -4.71776 | TAAGATTGAATAAAA TGCTCAC GATA GTAAGCA AGCTCGGCGACTGAC orn 4127957 - 4127412 - | oligoribonuclease rsgA 4128157 - 4129209 + | ribosome-associated GTPase TERM 4273 4129594 - 4129622 + F 70 -5.8 -4.38141 | overlap 4129596 GAAGGGTCTGACAGG GTGGGCGCAGAG CGATA CAATGCGCCCCC TTATTTTATCTAACG psd 4129657 - 4130538 + | phosphatidylserine decarboxylase TERM 4274 4131249 - 4131239 - g 80 -4.6 -5.04175 | overlap 4131240 CGAATTATACAAAAA GCGC GAA GCAC GGGTTCAGGCTCAGC TERM 4275 4132386 - 4132396 + G 71 -4.6 -4.59109 | opp_overlap 4132381, overlap 4132381 CCAACACAAGTTGCG CGCG CAA TGCG TTTTTACCGCCTGTC TERM 4276 4132754 - 4132788 + G 85 -12.3 -3.30701 | gap 1, opp_overlap 4132753 4132756, overlap 4132756 4132783 AGTGGTCTATCATAT TAT-CCGCCGTTGGAT GCTG ATCCAGCGGCGGCGTA TTGCCTTTGATCGCG TERM 4277 4132785 - 4132756 - g 78 -12.1 -2.66316 | opp_overlap 4132754 4132756 4132783, overlap 4132753 TGGTCTATCATATTA TCCGCCGTTGGAT GCTG ATCCAGCGGCGGC GTATTGCCTTTGATC TERM 4278 4132756 - 4132785 + G 87 -14.3 -2.52602 | opp_overlap 4132756 4132753, overlap 4132754 4132783 TGGTCTATCATATTA TCCGCCGTTGGAT GCTG ATCCAGCGGCGGC GTATTGCCTTTGATC TERM 4279 4132838 - 4132811 - g 72 -11.3 -2.71364 | gap 1, opp_overlap 4132809 TGATCGCGCCAAGCA GCGCCGCGCCGA TATTC TC-GCGCAGCGC GCCCGTGGTGAGGAA YpsIP31758_3664 4130580 - 4133921 + | hypothetical protein TERM 4280 4133966 - 4133945 - T 91 -6.5 -5.48514 | opp_overlap 4133945 4133947, overlap 4133947 AGTAAGAAATAAAAA TGCCCTGCG CCTT CACAGGTCA GGGTATTTGTTTTTG TERM 4281 4133945 - 4133971 + T 82 -5.9 -4.97405 | gap 1, opp_overlap 4133945 4133947, overlap 4133947 AGTAAGAAATAAAAA TGCCCTGCGCCT TCAC AGGT-CAGGGTA TTTGTTTTTGTAAGT genX 4135160 - 4134183 - | lysyl-tRNA synthetase YpsIP31758_3666 4135511 - 4135320 - | hypothetical protein frdA 4135618 - 4137441 + | fumarate reductase flavoprotein subunit frdB 4137434 - 4138168 + | fumarate reductase iron-sulfur subunit TERM 4282 4138244 - 4138255 + G 73 -2.2 -5.10064 | overlap 4138224 4138231 CTGGTGGCAACAGCT TGGT TTCT ACCG TTTTTATATGTTGCG frdC 4138185 - 4138577 + | fumarate reductase subunit C frdD 4138594 - 4138950 + | fumarate reductase subunit D TERM 4283 4138976 - 4138998 + T 100 -13.4 -4.0825 | CACATGCCATATTCG CGGCCTGCTG TTC TGGCAGGCCG TTCTTTGGTTAAAGC sugE 4139429 - 4139115 - | quaternary ammonium compound-resistance protein SugE TERM 4284 4139317 - 4139303 - G 77 -4.2 -5.09762 | AGGCCAATAGAAAAA CACTGG CAG CCATTG CGACGAGGGTAATAA efp 4140242 - 4139676 - | elongation factor P YpsIP31758_3673 4140278 - 4141306 + | KamA family iron-sulfur cluster-binding protein TERM 4285 4141540 - 4141487 - T 100 -16.9 -3.33696 | overlap 4141488 TTCCCCTTCAATTAA CGTTGTCAGCAGCCTCAGGGGATAC CTTA GTATCCCCTCAGACTACTGACAAAC CCCGATGACGCGATC TERM 4286 4141539 - 4141488 - T 100 -20.4 -2.60075 | overlap 4141487 TCCCCTTCAATTAAC GTTGTCAGCAGCCTCAGGGGATAC CTTA GTATCCCCTCAGACTACTGACAAA CCCCGATGACGCGAT TERM 4287 4141612 - 4141586 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 4141595, overlap 4141587 4141602 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4288 4141613 - 4141587 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 4141595, overlap 4141586 4141602 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4289 4141689 - 4141713 + T 100 -9.4 -4.88918 | gap 1, opp_overlap 4141687, overlap 4141691 CTTTGTCAATAACCT CA-GGGGATAC CTTA GTATCCCCCTG TTTTGTTTACGATGA TERM 4290 4141691 - 4141710 + T 86 -12.2 -3.02684 | opp_overlap 4141687, overlap 4141689 TTGTCAATAACCTCA GGGGATAC CTTA GTATCCCC CTGTTTTGTTTACGA YpsIP31758_3674 4142176 - 4141778 - | hypothetical protein TERM 4291 4142724 - 4142693 - R 100 -16.8 -4.38154 | opp_overlap 4142698 4142718, overlap 4142698 ACAGTCTTCACAAAA TAAAAGCGAGCAGG TCAC CCTACTCGCTTTTA TCAACAGCTTTACCT TERM 4292 4142719 - 4142698 - R 100 -12.3 -5.18371 | opp_overlap 4142698 4142718, overlap 4142693 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT TERM 4293 4142698 - 4142719 + r 93 -10.1 -4.37658 | opp_overlap 4142698 4142693, overlap 4142718 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT groL 4144447 - 4142801 - | chaperonin GroEL TERM 4294 4143816 - 4143826 + g 71 -6.8 -4.25056 | opp_overlap 4143815 TCAAGTTCAATAGAG CCAG TTT CTGG TTTATTGATGAAGTA groS 4144787 - 4144494 - | co-chaperonin GroES fxsA 4145629 - 4145042 - | FxsA aspA 4146053 - 4147489 + | aspartate ammonia-lyase TERM 4295 4147514 - 4147542 + F 100 -10.4 -5.04601 | gap 2, opp_overlap 4147518 TCGGTAGCCCTCTAA GGCACGCATGCTCC TCT GGA-CA-GCGTGCC TTTTTACTTTCTGGC TERM 4296 4148356 - 4148342 - g 70 -10 -3.17229 | opp_overlap 4148342, overlap 4148340 ATGCGATCATCAACA GCCCAA GTG TTGGGC TCGTTGAAACACCGC dcuA 4147609 - 4148910 + | anaerobic C4-dicarboxylate transporter TERM 4297 4148914 - 4148945 + F 77 -10.2 -3.18511 | gap 1, overlap 4148919 CTGGTTCTGTAATCT GTCTGATGGGGCGCA TCA TGCGCCCCAATA-AC TTCGGTCTATCTCTC TERM 4298 4148919 - 4148941 + F 91 -13.4 -2.56571 | overlap 4148914 TCTGTAATCTGTCTG ATGGGGCGCA TCA TGCGCCCCAA TAACTTCGGTCTATC TERM 4299 4148989 - 4149002 + F 71 -9.5 -2.91126 | overlap 4148985 TCATCTTCTGACTGG CCCCG GCTT CGGGG TATAGTATGATTTGT TERM 4300 4149316 - 4149281 - g 74 -9.2 -3.75629 | gap 1 TACTGGGAAGGTAAA CTCGAACAAGAGTATGA GGT TCAG-CTCTTGTTCAAG AGCAATACTGACCAT cutA 4149095 - 4149454 + | divalent-cation tolerance protein CutA dsbD 4149430 - 4151217 + | thiol:disulfide interchange protein precursor TERM 4301 4151261 - 4151219 - T 100 -8.3 -4.77173 | overlap 4151221 CGGTTACAAAATAAA TAGCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATCAA CGCTCAATCACGACA TERM 4302 4151259 - 4151221 - T 90 -10.9 -3.99938 | overlap 4151219 GTTACAAAATAAATA GCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATC AACGCTCAATCACGA fdhF 4153426 - 4151279 - | anaerobic formate dehydrogenase, alpha subunit, -type YpsIP31758_3683 4154006 - 4153449 - | iron-sulfur cluster-binding protein YpsIP31758_3684 4156044 - 4154029 - | putative oxidoreductase Fe-S binding subunit TERM 4303 4155455 - 4155467 + g 78 -5.5 -4.87803 | AGGTTAACCGGTGTT GCGTC GCG GATGC TTTTATTTGACGATG TERM 4304 4155537 - 4155553 + g 83 -9.4 -4.35461 | overlap 4155522 CATTGTGCTCATTCA GCGCCA TGTGT TGGCGC TTTTGCTGCTGTTGA TERM 4305 4155603 - 4155617 + g 73 -7.1 -4.2558 | CCACCAAGGTCAGAG CCTGC GTAGG GCAGG TTTTAATACAGGCTG TERM 4306 4155916 - 4155934 + g 79 -11.8 -3.14126 | opp_overlap 4155915, overlap 4155907 ATCGCCTTTGAATAC TTTCACCC GTG GGGTGAAA TATTCCGGTTTATCA TERM 4307 4156371 - 4156361 - H 71 -8.2 -3.42621 | opp_overlap 4156367 AACGTCAACCGACAA CGGG GTG CCCG TAAAGATAGGGCTAT YpsIP31758_3685 4156464 - 4157039 + | putative transcriptional regulator TERM 4308 4157226 - 4157210 - T 76 -10.9 -2.62616 | opp_overlap 4157209 4157208 4157205 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 4309 4157381 - 4157407 + T 81 -7.2 -4.71776 | opp_overlap 4157381 TACGGGACGAAGAAA CCGGAGGATGTC GAT GACAAACTTCGG TTTTCTTGCGTCTTA YpsIP31758_3686 4158481 - 4157513 - | putative phage integrase YpsIP31758_3687 4159719 - 4158523 - | putative helicase TERM 4310 4158612 - 4158637 + g 79 -3.3 -5.19879 | TATAGCCGAATAATT TGATAAACGAG CCTT CTCTTTTTTCA TTTTTATATTTACGA TERM 4311 4160499 - 4160471 - g 72 -10.4 -3.06492 | gap 1, opp_overlap 4160477, overlap 4160476 4160477 CGATGTATTTGAAGA GGAAACTCGCCCT GAAC AGGG-GAGTTCCC CCATTCAGGATGATT TERM 4312 4160513 - 4160476 - g 76 -9.1 -3.93038 | opp_overlap 4160477, overlap 4160471 4160477 TATTTGAAGAGGAAA CTCGCCCTGAACAGGGG AGTT CCCCCATTCAGGATGAT TTGTTAAGAACGGGA TERM 4313 4160477 - 4160512 + G 77 -8.2 -4.15044 | opp_overlap 4160471 4160476 4160477 ATTTGAAGAGGAAAC TCGCCCTGAACAGGGG AGTT CCCCCATTCAGGATGA TTTGTTAAGAACGGG TERM 4314 4160512 - 4160477 - g 83 -12.6 -2.95341 | opp_overlap 4160477, overlap 4160471 4160476 ATTTGAAGAGGAAAC TCGCCCTGAACAGGGG AGTT CCCCCATTCAGGATGA TTTGTTAAGAACGGG YpsIP31758_3688 4159911 - 4160558 + | hypothetical protein YpsIP31758_3689 4161477 - 4160572 - | hypothetical protein TERM 4315 4160806 - 4160818 + g 83 -9.1 -4.38927 | opp_overlap 4160805 4160804 4160806, overlap 4160805 AGGAGAATCAAAATC CAGCC GCA GGCTG TTTATTCTGTCACGC TERM 4316 4161537 - 4161507 - R 70 -5.2 -4.57353 | opp_overlap 4161518, overlap 4161509 TTTGATCATAGAAAA GAGGGAGCCGCCCC ACA GGGACAAGGCCCCC GATGGGTTTGGTTAC TERM 4317 4161537 - 4161509 - R 70 -7.4 -3.89814 | gap 2, opp_overlap 4161518, overlap 4161507 TGATCATAGAAAAGA GGGAGCC--GCCCC ACA GGGACAAGGCCCCC GATGGGTTTGGTTAC YpsIP31758_3690 4162558 - 4161587 - | antirestriction protein TERM 4318 4161658 - 4161623 - G 75 -3.2 -5.06414 | gap 1, opp_overlap 4161650, overlap 4161624 4161627 TTGGGTTAACAAAAA CTCAGACGCCTGACG TGCTTGT CGGCAGGCG-CGGAA TAGCGCCTTTTTGTC TERM 4319 4161650 - 4161665 + g 91 -7.5 -5.32599 | opp_overlap 4161627 4161624 4161623 ACGTGCTTGTCGGCA GGCGC GGAATA GCGCC TTTTTGTCTTTTCTG TERM 4320 4161931 - 4161917 - G 73 -3.4 -5.00616 | overlap 4161919 TGCTTCGGTAAAAAA CTGCCC AAC GAGCGG CATGATAATTTCGTC TERM 4321 4162606 - 4162577 - H 100 -17.9 -5.10029 | gap 1, overlap 4162567 ATGAACCTCAAAAAA GGCGCACCCCAGCC AGT GGC-GGAGTGCGCC ACAGGTGGATAAAAG YpsIP31758_3691 4163226 - 4163657 + | hypothetical protein YpsIP31758_3692 4163688 - 4167947 + | RHS/YD repeat-containing protein YpsIP31758_3693 4167963 - 4168580 + | hypothetical protein TERM 4322 4168581 - 4168620 + F 78 -8.8 -3.79113 | opp_overlap 4168587, overlap 4168586 4168587 GTTCCATTACGATAA AAAAAATCGGAAAGGTTA TATA TAATCTTTCCGACTTTTG TTGTTATAGACCCGT TERM 4323 4168586 - 4168615 + F 100 -8.7 -4.95547 | opp_overlap 4168587, overlap 4168581 4168587 ATTACGATAAAAAAA ATCGGAAAGGTTA TATA TAATCTTTCCGAC TTTTGTTGTTATAGA TERM 4324 4168614 - 4168587 - f 100 -10 -5.9873 | opp_overlap 4168587 4168586 4168581 TTACGATAAAAAAAA TCGGAAAGGTTA TATA TAATCTTTCCGA CTTTTGTTGTTATAG TERM 4325 4168587 - 4168614 + F 91 -12.2 -3.56244 | opp_overlap 4168587, overlap 4168586 4168581 TTACGATAAAAAAAA TCGGAAAGGTTA TATA TAATCTTTCCGA CTTTTGTTGTTATAG YpsIP31758_3694 4168820 - 4169257 + | hypothetical protein YpsIP31758_3695 4169387 - 4169941 + | hypothetical protein YpsIP31758_3696 4170053 - 4170577 + | hypothetical protein TERM 4326 4170577 - 4170616 + T 78 -8.8 -3.79113 | opp_overlap 4170583, overlap 4170582 4170583 TGTTCCATTACGATA AAAAAATCGGAAAGGTTA TATA TAATCTTTCCGACTTTTG TTGTTATAGACCCGT TERM 4327 4170582 - 4170611 + T 100 -8.7 -4.95547 | opp_overlap 4170583, overlap 4170577 4170583 CATTACGATAAAAAA ATCGGAAAGGTTA TATA TAATCTTTCCGAC TTTTGTTGTTATAGA TERM 4328 4170583 - 4170610 + T 91 -12.2 -3.56244 | opp_overlap 4170583, overlap 4170582 4170577 ATTACGATAAAAAAA TCGGAAAGGTTA TATA TAATCTTTCCGA CTTTTGTTGTTATAG TERM 4329 4170610 - 4170583 - T 100 -10 -5.67967 | opp_overlap 4170583 4170582 4170577 ATTACGATAAAAAAA TCGGAAAGGTTA TATA TAATCTTTCCGA CTTTTGTTGTTATAG YpsIP31758_3697 4171811 - 4170921 - | hypothetical protein TERM 4330 4171879 - 4171833 - H 100 -21.9 -3.31144 | TCCTGATCCGCATAA GGCGAGTTATGTATTCCGTCC CGTGT GAACGGAATACATAACTCRCC GGATTCCCCATGACA TERM 4331 4172004 - 4172018 + H 80 -10 -3.61764 | TCTTACGAGGTTCCC CAGGTC TCA GACCTG TTTGCGGCTTACTCC TERM 4332 4172283 - 4172338 + H 84 -11.3 -3.21034 | gap 3, overlap 4172280 4172285 4172287 TGTACTGCCGGTCGT GTGCTGCGCGCGTCACTTG-GTACTCGT TTC ACTCGTTCGCAAGTGACGC-CGC-GCAC CTTTTGCTCTCAATG TERM 4333 4172285 - 4172339 + H 100 -11.5 -4.3586 | gap 2, overlap 4172280 4172283 4172287 TACTGCCGGTCGTGT GCTGCGC-GCGTCACTTG-GTACTCGT TTC ACTCGTTCGCAAGTGACGCCGCGCACC TTTTGCTCTCAATGC TERM 4334 4172287 - 4172337 + H 86 -12.7 -2.52138 | gap 2, overlap 4172280 4172283 4172285 CTGCCGGTCGTGTGC TGCGC-GCGTCACTTG-GTACTCGT TTC ACTCGTTCGCAAGTGACGCCGCGCA CCTTTTGCTCTCAAT TERM 4335 4172836 - 4172825 - H 73 -7.2 -4.15833 | ATTATTATTCCAAAA GCGG AAAA CCGC CTAAAAATAACTGAG YpsIP31758_3698 4172940 - 4173236 + | hypothetical protein YpsIP31758_3699 4174791 - 4173268 - | hypothetical protein YpsIP31758_3700 4176197 - 4174791 - | hypothetical protein TERM 4336 4176083 - 4176069 - G 79 -10 -3.8512 | GATGGAGTAGAACAA GCCATC GCT GATGGC ACCACTTGCTGACAA YpsIP31758_3701 4177171 - 4176218 - | hypothetical protein TERM 4337 4176556 - 4176546 - G 70 -2.4 -4.89477 | TGCTGAATAACAAAA CCGC TAC GAGG GTAAATATTCCCCCA YpsIP31758_3702 4177572 - 4177168 - | hypothetical protein TERM 4338 4177609 - 4177581 - H 76 -10.3 -3.04792 | opp_overlap 4177578 TGATCATTGTCAATA CTCCTTAAGCAGA TTA TCGGCTTAAGGTG CAGTTAGATGATTTT TERM 4339 4177997 - 4178009 + H 93 -9.1 -4.45544 | CGCGTACTGCCTGTA CCGAC CAT GTCGG TTTTCATTAATAAAA YpsIP31758_3703 4178309 - 4180441 + | hypothetical protein TERM 4340 4180495 - 4180510 + F 80 -9 -4.07568 | GGTTGGCAGGGAGCG CGTGTG CATG CACACG TTTTCCCAGCGGCCG YpsIP31758_3704 4181327 - 4182028 + | putative lipoprotein TERM 4341 4182454 - 4182494 + T 93 -11.1 -4.22948 | opp_overlap 4182473 4182489, overlap 4182484 4182491 CTACGGCTTGTTCAA CGGGTGTTATCTGCCCAAA GGA TTTGAGCAGTCAACCCCCG TTTTGGGTGACTTTT TERM 4342 4182484 - 4182505 + T 71 -2.3 -5.16132 | gap 1, opp_overlap 4182473 4182489, overlap 4182454 4182491 CAAAGGATTTGAGCA GTCAACCC CCGTTTT GGG-TGAC TTTTCTTTTGCTGTC YpsIP31758_3705 4185306 - 4182460 - | hypothetical protein TERM 4343 4183225 - 4183238 + g 73 -9.5 -3.33162 | CTCTTCTGCCCTGGC CCGCC GACC GGCGG TTCTGCGCTCACGTC TERM 4344 4183873 - 4183858 - G 75 -6 -4.56736 | overlap 4183860 ATTGAAGAACGAAAA CCCCGG ATGA CCGGTG CCGGTGTCCCGCCCA YpsIP31758_3706 4185707 - 4185306 - | putative lipoprotein TERM 4345 4185602 - 4185622 + g 71 -7.5 -4.02719 | ACAGTGTCAGCATGG TGCTGCCGC CCG GCGGTAACA TTTGATCTTTACTGG YpsIP31758_3707 4187237 - 4185720 - | hypothetical protein YpsIP31758_3708 4188100 - 4187234 - | hypothetical protein YpsIP31758_3709 4188750 - 4188097 - | hypothetical protein TERM 4346 4188559 - 4188576 + g 77 -2.6 -5.1861 | GCTGTAAACGGTGGA TGGCGG CACTTC CCACCA TTTTTTGGTACTACC YpsIP31758_3710 4189121 - 4188747 - | hypothetical protein YpsIP31758_3711 4189481 - 4189131 - | hypothetical protein YpsIP31758_3712 4189742 - 4189497 - | hypothetical protein YpsIP31758_3713 4190050 - 4189742 - | hypothetical protein YpsIP31758_3714 4191458 - 4190571 - | hypothetical protein YpsIP31758_3715 4193381 - 4191576 - | hypothetical protein YpsIP31758_3716 4194616 - 4193378 - | hypothetical protein YpsIP31758_3717 4195489 - 4194737 - | hypothetical protein YpsIP31758_3718 4197609 - 4195489 - | hypothetical protein TERM 4347 4197545 - 4197531 - G 76 -9.2 -3.85909 | TCAGGCAAATGTAAA CGGCGC TCC ACGCCG TGGCTGCCGTGTACA YpsIP31758_3719 4198189 - 4197668 - | hypothetical protein YpsIP31758_3720 4198824 - 4198186 - | transglycosylase SLT domain-containing protein TERM 4348 4198508 - 4198484 - G 90 -12.9 -3.76125 | opp_overlap 4198479 CCATTCCAACCCAAA TTGACTTGGGC AAT GCCCACGTCAA TACGCTTCAGTGGTG TERM 4349 4198702 - 4198675 - G 78 -9 -4.0942 | opp_overlap 4198675 4198674 CAGCGAGTATAGAAA CGCCGCTGGTAC TCGG GCTTCAGCGGCG ATTTCCCTATAGATC YpsIP31758_3721 4199621 - 4198803 - | hypothetical protein YpsIP31758_3722 4200045 - 4199713 - | hypothetical protein YpsIP31758_3723 4200241 - 4200035 - | hypothetical protein TERM 4350 4200272 - 4200303 + H 100 -13 -3.86653 | AATGGTGTGGTTAGA TGCCCTGTGAGTGT TCGC GCACCCACGGGGCA TTGTCTTTACTGACT YpsIP31758_3724 4200453 - 4200809 + | DNA binding protein YpsIP31758_3725 4200871 - 4201002 + | hypothetical protein TERM 4351 4201075 - 4201044 - T 100 -8.9 -4.58085 | gap 1, opp_overlap 4201045 4201054 ATATTGACAAATAAA CCGCAGATAACCCT TTATC AGGGTTATCT-CAG TATTCAGTATCGTCC YpsIP31758_3726 4202057 - 4201125 - | putative transposase YpsIP31758_3727 4203428 - 4202151 - | shufflon protein YpsIP31758_3728 4204100 - 4203432 - | type IV prepilin peptidase pilS 4204684 - 4204097 - | type IV pilus biogenesis protein pilR 4205799 - 4204699 - | type IV pilus biogenesis protein PilR TERM 4352 4204773 - 4204763 - G 73 -5.4 -4.49316 | ATGAGTAAGAAGAAA CTGA AAA TCAG TAACAGAGAGAAAAA YpsIP31758_3731 4207354 - 4205801 - | type IV secretion system protein TERM 4353 4206806 - 4206796 - G 76 -8.2 -4.10164 | GCATGACGACATAAA GGCC GTC GGCC GTTGGGCGATGCTCA TERM 4354 4206861 - 4206840 - G 81 -9.5 -3.98256 | opp_overlap 4206840 4206839, overlap 4206838 CGCGCACCAAAAACA CCGACTTTG CGAG CAAAGTCAG ATTTTACGCGCCCAC pilP1 4207858 - 4207364 - | type IV pilus biogenesis protein PilP TERM 4355 4207701 - 4207725 + g 75 -11.5 -2.55074 | overlap 4207721 GTCTGAACCTGAGCC TCCAGCAACAT ATT ACGTTGCTGGA TAGATTCCAGTTGGC YpsIP31758_3733 4209182 - 4207845 - | pilin accessory protein PilO TERM 4356 4208042 - 4208054 + g 76 -9.1 -3.81027 | overlap 4208034 TTTCCTGCCCCGGAA CCACC GGA GGTGG TTTGACTTCATTGAG TERM 4357 4208794 - 4208781 - G 70 -2.3 -4.88222 | overlap 4208782 ATTAAAATCTAAAAA CCGCT GTTG AGCGC TCAATACCTCATTCA YpsIP31758_3734 4210777 - 4209185 - | type IVB pilus formation outer membrane protein YpsIP31758_3735 4211228 - 4210791 - | PilM protein YpsIP31758_3736 4212300 - 4211230 - | pilus biogenesis protein TERM 4358 4212418 - 4212402 - R 100 -10.8 -5.95539 | opp_overlap 4212401 4212402 GGGGAAATAAAAAAA CGCCGG AATAA CCGGCG ATTAGTTAAAACTTT TERM 4359 4212402 - 4212418 + r 76 -10.8 -2.61467 | opp_overlap 4212402, overlap 4212401 GGGGAAATAAAAAAA CGCCGG AATAA CCGGCG ATTAGTTAAAACTTT YpsIP31758_3737 4212824 - 4212438 - | PilT domain-containing protein YpsIP31758_3738 4213054 - 4212821 - | prevent-host-death family protein YpsIP31758_3739 4213656 - 4213225 - | hypothetical protein TERM 4360 4213732 - 4213715 - R 79 -7.7 -4.38141 | opp_overlap 4213715 4213717, overlap 4213716 TGTCAGAGAAAAGAA CGCCAGT CAAA ACTGGCA GGTTAATTTGCCGTA YpsIP31758_3740 4214401 - 4213859 - | hypothetical protein YpsIP31758_3741 4214517 - 4214398 - | hypothetical protein YpsIP31758_3742 4215460 - 4214702 - | hypothetical protein YpsIP31758_3743 4216819 - 4215620 - | hypothetical protein TERM 4361 4216096 - 4216122 + g 90 -9.4 -4.51699 | overlap 4216098 AACGGGTTGATTTAT GACTGAGTTCGG TAT CCGAACTCCGTG TTTTATCCTCATTCT TERM 4362 4216098 - 4216120 + g 91 -12 -3.85857 | overlap 4216096 CGGGTTGATTTATGA CTGAGTTCGG TAT CCGAACTCCG TGTTTTATCCTCATT TERM 4363 4216308 - 4216324 + g 73 -5.1 -4.51812 | opp_overlap 4216300 CTCAATACCGCCCGT GCGGT CAGACGA ACCGC TTTATTCTTATGCCC YpsIP31758_3744 4217216 - 4217055 - | hypothetical protein YpsIP31758_3745 4217866 - 4217285 - | hypothetical protein YpsIP31758_3746 4219509 - 4217863 - | hypothetical protein dnaB2 4220899 - 4219538 - | replicative DNA helicase YpsIP31758_3748 4221773 - 4220892 - | hypothetical protein TERM 4364 4221848 - 4221870 + r 75 -10.6 -2.85784 | opp_overlap 4221848, overlap 4221845 4221850 TTGATCACTTTTAAA CACAGGGATT GAA AATCCCCGTG TCCTTGGTTCGATTC TERM 4365 4221870 - 4221848 - R 100 -12.8 -3.58343 | opp_overlap 4221848 4221845 4221850 TTGATCACTTTTAAA CACAGGGATT GAA AATCCCCGTG TCCTTGGTTCGATTC TERM 4366 4221912 - 4221931 + r 100 -11.4 -4.84527 | opp_overlap 4221911 4221912 ACCACTATTTATAAG GCCTCGCT GCAA AGCGGGGC TTTTTCGTATCTGGA YpsIP31758_3749 4224904 - 4222334 - | viral enhancin protein YpsIP31758_3750 4225086 - 4224919 - | hypothetical protein YpsIP31758_3751 4225316 - 4225741 + | hypothetical protein TERM 4367 4225777 - 4225792 + F 89 -7.5 -5.05116 | opp_overlap 4225731 4225777 TTTAATGTCAACGAA CCCGC CAATGT GCGGG TTTTGTTATTTCTAA rhaT 4226621 - 4227655 + | rhamnose-proton symporter TERM 4368 4227721 - 4227751 + T 86 -11.3 -3.25896 | gap 1, opp_overlap 4227720, overlap 4227724 TAAAGATGATGATAT TGACGGGCAGCGTT GAAA AAC-CTGCCCGTTA TCTTATGGCTAATCG TERM 4369 4227724 - 4227748 + T 88 -10.8 -3.76568 | gap 1, opp_overlap 4227720, overlap 4227721 AGATGATGATATTGA CGGGCAGCGTT GAAA AAC-CTGCCCG TTATCTTATGGCTAA rhaR 4228676 - 4227804 - | transcriptional activator RhaR rhaS 4229631 - 4228810 - | transcriptional activator RhaS TERM 4370 4229652 - 4229671 + H 72 -9.2 -3.10164 | GCCCTCTTTCGACAG GCACGGCG AAAT CGCCCTGC TTCAGTCCTCGATAG rhaB 4229953 - 4231515 + | rhamnulokinase TERM 4371 4231997 - 4232013 + G 73 -7.9 -4.01564 | CTGGATTGAACACTG TCAGGCG AGT CGCCGGA TTTCTGCCTATTTTG rhaA 4231512 - 4232768 + | L-rhamnose isomerase TERM 4372 4233259 - 4233246 - g 74 -3.8 -4.88067 | AGTTATGTACAAAAA CTGG AGAACG CCAG CTTCACGCGCCTGTT rhaD 4232781 - 4233605 + | rhamnulose-1-phosphate aldolase TERM 4373 4234101 - 4234081 - g 73 -10.3 -3.16492 | overlap 4234079 TGATAGCCATCAATA CCACGGCAG GAA CGGCCGCGG AATTGACCAGTAATG fucO 4233672 - 4234820 + | lactaldehyde reductase rhaU 4234834 - 4235148 + | L-rhamnose 1-epimerase TERM 4374 4235307 - 4235288 - T 100 -15 -3.52073 | opp_overlap 4235286 4235300 TCCTGAATACTAGAA CCGCGCCA TCCG TGGCGCGG CCGTTTAAAGCTAAT ssb 4235908 - 4235360 - | single-strand DNA-binding protein uvrA 4236507 - 4239350 + | excinuclease ABC subunit A TERM 4375 4239389 - 4239355 - T 74 -9.4 -3.35088 | gap 1, overlap 4239358 AAACCGTTTAATGAA CCACTCTGGGGCAAT CAATGT ATTGCTCCAGAG-GG TATGACATTCAGCGT TERM 4376 4239387 - 4239358 - T 77 -10.8 -2.84098 | overlap 4239355 CCGTTTAATGAACCA CTCTGGGGCAAT CAATGT ATTGCTCCAGAG GGTATGACATTCAGC YpsIP31758_3762 4239802 - 4239443 - | hypothetical protein TERM 4377 4240222 - 4240203 - R 72 -9.2 -3.18582 | overlap 4240206 GAGGTTATTGACCAA GTACCCGC GACG GCGGGAAC CGGCAAGCCGTAAAA TERM 4378 4240219 - 4240206 - R 70 -9.5 -2.79098 | overlap 4240203 GTTATTGACCAAGTA CCCGC GACG GCGGG AACCGGCAAGCCGTA tyrB 4241522 - 4240329 - | aromatic amino acid aminotransferase alr2 4242787 - 4241708 - | alanine racemase TERM 4379 4242004 - 4241994 - G 71 -8.2 -3.727 | GCGATCACACCTAAA CGCG TAT CGCG CTCACTGACCCAGGT TERM 4380 4242161 - 4242181 + g 73 -9.7 -3.28712 | opp_overlap 4242174 CAGCACAATCCCTGG GCGCACC CAATCAC GGTGCGC TTGTGGCCACCGCAG dnaB1 4244290 - 4242884 - | replicative DNA helicase TERM 4381 4243639 - 4243649 + g 70 -2.4 -4.84359 | GATCGGATTTTTGTA GCCC AGC GGTC TTTTTATCGAGATCA TERM 4382 4245412 - 4245390 - g 71 -2.6 -4.99134 | overlap 4245391 ATTCTAAACCAAAAA GGGGGGAT CTATGTC ACCCGCCC TTCACTGAATGTCTA YpsIP31758_3766 4244622 - 4245605 + | quinone oxidoreductase, NADPH-dependent TERM 4383 4245644 - 4245671 + T 89 -12.7 -2.78395 | opp_overlap 4245644, overlap 4245637 4245636 4245646 4245648 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4384 4245671 - 4245644 - T 100 -14.9 -4.69664 | opp_overlap 4245644 4245637 4245636 4245646 4245648 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4385 4245646 - 4245669 + T 71 -9.5 -2.9296 | opp_overlap 4245644, overlap 4245644 4245637 4245636 4245648 CATGATTGAAAAACA GAGGGCCCC GATTAA GGAGCCCTC TGTCATTACACTTTC TERM 4386 4245747 - 4245763 + T 71 -3 -5.03994 | gap 1, opp_overlap 4245741, overlap 4245748 TCACGTAAATGAACG T-GCCGT TTAT ACGGCTA TTTTTATCTCTAACA TERM 4387 4245748 - 4245761 + T 76 -8.1 -4.14422 | opp_overlap 4245741, overlap 4245747 CACGTAAATGAACGT GCCGT TTAT ACGGC TATTTTTATCTCTAA pspG 4246168 - 4245950 - | phage shock protein G TERM 4388 4246583 - 4246550 - R 100 -15.5 -3.13908 | overlap 4246578 AAGTGAATGAGTGAA CCCCGAATCACTTAC GCCA GTAAATAATTCGGGG GCCCAATTTGCCGAA dusA 4247730 - 4246693 - | tRNA-dihydrouridine synthase A TERM 4389 4248042 - 4248008 - g 95 -12.2 -4.36411 | TATCAATCAGGAAAA GCTGCTCGCACAAGCT GAA AGCCTGTGCCAACAAC GAAACGTCCGGCTGA zur 4247982 - 4248494 + | zinc uptake transcriptional repressor TERM 4390 4248648 - 4248620 - T 78 -9 -3.88015 | gap 1, opp_overlap 4248624, overlap 4248622 4248624 TAGAGAATCATGAAA TAGAGCCGTACCT CAAC AGGCACGGCT-TA TTATTCTGGGAGGAA TERM 4391 4248647 - 4248622 - T 78 -9.7 -3.51793 | opp_overlap 4248624, overlap 4248620 4248624 GAGAATCATGAAATA GAGCCGTACCT CAAC AGGCACGGCTT ATTATTCTGGGAGGA TERM 4392 4248645 - 4248624 - T 95 -12.3 -3.32233 | opp_overlap 4248624, overlap 4248622 4248620 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG TERM 4393 4248624 - 4248645 + T 86 -10.1 -4.02817 | opp_overlap 4248624 4248622 4248620 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG lexA 4249283 - 4248675 - | LexA repressor TERM 4394 4248865 - 4248877 + g 71 -4.8 -4.52589 | ACAACTTGCCCATTA CGCA CATCC TGCG TTTTATGTACCGCCA dgkA 4249779 - 4249408 - | diacylglycerol kinase TERM 4395 4249865 - 4249855 - H 71 -6.8 -4.18401 | opp_overlap 4249855 CCACAGATCTCAAAA CCAG TTT CTGG TATCCTTGCGACGAA TERM 4396 4249986 - 4249971 - g 77 -6.8 -4.57341 | AATTGTTGGTAAAAA GCAAGG TTAT CCCTGC AGATCCGGTCTCTGA plsB 4249907 - 4252384 + | glycerol-3-phosphate acyltransferase TERM 4397 4252431 - 4252411 - T 93 -12.5 -3.0644 | opp_overlap 4252412, overlap 4252402 ACTCAATGCTTAACA GCCCCCTGC CTA GCAGGGGGT TTTCTGAATACCATA TERM 4398 4252412 - 4252430 + T 100 -16 -4.42653 | opp_overlap 4252402 4252411 CTCAATGCTTAACAG CCCCCTGC CTA GCAGGGGG TTTTCTGAATACCAT TERM 4399 4252451 - 4252473 + T 100 -10.6 -5.09426 | opp_overlap 4252442 4252451 TGAATACCATAACAA TGGCCGGA CTCATTA TCCGGCCA TTTTTTACCATTACC TERM 4400 4252473 - 4252451 - T 95 -11.3 -3.89291 | opp_overlap 4252451, overlap 4252442 TGAATACCATAACAA TGGCCGGAC TCATT ATCCGGCCA TTTTTTACCATTACC ubiA 4253431 - 4252565 - | 4-hydroxybenzoate octaprenyltransferase ubiC 4254121 - 4253597 - | chorismate pyruvate lyase TERM 4401 4254189 - 4254177 - H 72 -7.7 -3.87925 | AATTAGTAAACAGAA CGCTA TTG TAGCG CAGAATAGGTACCCG TERM 4402 4254704 - 4254692 - H 70 -2.7 -5.01823 | ACAATAACAAGAAAA TTCCT ACA AAGAA TTAGCCGGGTCTTAT TERM 4403 4255202 - 4255166 - g 75 -8 -4.21933 | overlap 4255168 CGAAGGTGAAAATAA CACCGCGATATCCCTG TTCGG CACGGATATCGCCGTT GAGACCCGGCCAGGT TERM 4404 4255200 - 4255168 - g 79 -10.6 -3.70108 | overlap 4255166 AAGGTGAAAATAACA CCGCGATATCCCTG TTCGG CACGGATATCGCCG TTGAGACCCGGCCAG TERM 4405 4257587 - 4257567 - g 72 -11.1 -2.50816 | overlap 4257566 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YpsIP31758_3775 4254954 - 4258811 + | putative autotransporter protein TERM 4406 4259017 - 4259043 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 4259006, overlap 4259012 4259018 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4407 4259018 - 4259044 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 4259006, overlap 4259012 4259017 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4408 4259104 - 4259125 + T 74 -10.1 -3.14878 | overlap 4259103 4259107 GGTTTGTCAGCAGTC TGAGGTGCC TCTC GGCACCTCC TGTTGGATTAACGAC TERM 4409 4259107 - 4259122 + T 75 -10.4 -2.77791 | overlap 4259104 4259103 TTGTCAGCAGTCTGA GGTGCC TCTC GGCACC TCCTGTTGGATTAAC YpsIP31758_3776 4261190 - 4259133 - | putative oxidoreductase, FAD-binding YpsIP31758_3777 4261601 - 4261479 - | hypothetical protein YpsIP31758_3778 4261897 - 4262088 + | hypothetical protein TERM 4410 4262181 - 4262191 + T 75 -3.2 -5.1471 | overlap 4262127 TAAAATAGCAAGCCA TCTC TTT GGGA TTTATTTTTTCTCGT YpsIP31758_3779 4263611 - 4262193 - | hypothetical protein TERM 4411 4262362 - 4262345 - G 73 -8.3 -3.79138 | opp_overlap 4262357, overlap 4262336 4262334 AATACACGCAGCAAA CCCCCTG CTGC CCGGGGG TGAACCCCAGTAAAT TERM 4412 4263333 - 4263353 + g 73 -8.3 -3.88291 | opp_overlap 4263333 TGGGCAATGCGTAAA CGTAATCAG CCC CGGATTACG TTTATCCAGCTCGTC YpsIP31758_3780 4264901 - 4264704 - | hypothetical protein YpsIP31758_3781 4265659 - 4264967 - | putative periplasmic chaperone protein YpsIP31758_3782 4268160 - 4265782 - | fimbrial usher protein TERM 4413 4267826 - 4267814 - G 72 -10.5 -3.02013 | opp_overlap 4267813 AGTTTAACAACCATA CCCGG CCA CCGGG CTTCCATATTCTCAC YpsIP31758_3783 4269049 - 4268411 - | hypothetical protein TERM 4414 4269740 - 4269722 - R 100 -12.4 -5.81412 | opp_overlap 4269722 TTGAGCGAAAAAAAA CCCTGCCG ATG CAGCAGGG TTTAATTGAAACGGG TERM 4415 4269722 - 4269740 + r 86 -10.2 -3.90112 | opp_overlap 4269722 TTGAGCGAAAAAAAA CCCTGCCG ATG CAGCAGGG TTTAATTGAAACGGG terE 4270337 - 4269762 - | tellurium resistance protein TERM 4416 4270390 - 4270366 - R 100 -12.3 -3.61268 | opp_overlap 4270357 4270368 CACTGAAGTGTTAAA TATTCAGAGCA TTT TGCCCTGAATA TATGAATACGTTAAT terD 4271099 - 4270521 - | tellurium resistance protein terC 4272200 - 4271163 - | tellurite resistance protein terB 4272677 - 4272222 - | tellurite resistance protein TERM 4417 4272427 - 4272437 + g 71 -6.8 -4.1552 | GCATCAAATTCATAG CTGG TAA CCAG TTTGTTAAAGAACTC TERM 4418 4272498 - 4272513 + g 81 -3.3 -5.42605 | TTCAGGCGACTGCTT GATGA ACATGA TCATC TTTTGTTTTTCTTCC terA 4273894 - 4272710 - | tellurite resistance protein TERM 4419 4272771 - 4272785 + g 74 -10 -3.45634 | TCCATTTCTTTGTGT CCGCTA AAA TAGCGG TTAATTCGTTCAACT TERM 4420 4273737 - 4273719 - G 71 -7.4 -4.03234 | CCCTGCCCAGACAAA CGGATGGT GCT ATCATCCG TAACCGGTTGACCAT TERM 4421 4273878 - 4273866 - G 73 -10.5 -3.12327 | overlap 4273864 GTCTGAGACGCAACA GGGGC ATT GCCCC CAGGCATCAGATTCA terZ 4274487 - 4273894 - | tellurium resistance protein TERM 4422 4274965 - 4274950 - g 72 -6.1 -4.3467 | opp_overlap 4274942 4274950 ATCTTGACACCAAAA TGGCG TTTATC CGCCA TATCGTGAAAGCATT YpsIP31758_3790 4274763 - 4275824 + | hypothetical protein TERM 4423 4276241 - 4276225 - g 74 -4.3 -4.94058 | CGAATTCAAAGAAAA CCATAGC CAT GCAACGG ATCACCTGCTCTATT YpsIP31758_3791 4275836 - 4276972 + | hypothetical protein TERM 4424 4277490 - 4277501 + G 71 -4.4 -4.66938 | CTGGAATCCCTCTTT TCCA CTGA TGGA TTTTATATTCACCGT YpsIP31758_3792 4276965 - 4277777 + | hypothetical protein TERM 4425 4278062 - 4278081 + G 78 -12.2 -2.57944 | overlap 4278061 TCGTGCTCGCCAGCT TGGTACGC GCGG GCGTACCA CTTGGTGTGATGCTC YpsIP31758_3793 4277770 - 4278849 + | hypothetical protein YpsIP31758_3794 4278849 - 4279808 + | hypothetical protein YpsIP31758_3795 4280205 - 4280693 + | hypothetical protein TERM 4426 4281578 - 4281591 + G 73 -2.3 -5.09521 | opp_overlap 4281579, overlap 4281579 TTTACGCCATCCATA ATGCC ACTT GGCAA TTTTTCATTTATTGA YpsIP31758_3796 4281008 - 4281808 + | methylenetetrahydrofolate reductase TERM 4427 4281920 - 4281939 + F 70 -3.5 -4.78981 | opp_overlap 4281902, overlap 4281904 4281921 CCTCACTCTGATGGG TGGGGCT ATATCA ACCCCCA TTTCTTTTGCTTGAT YpsIP31758_3797 4282149 - 4283462 + | coproporphyrinogen III oxidase TERM 4428 4283831 - 4283821 - g 73 -5.4 -4.52047 | overlap 4283823 TATCAGAGCACAAAA TTGC CAG GCAA TCGCCCTGCTGGAAC YpsIP31758_3798 4283513 - 4284022 + | hypothetical protein YpsIP31758_3799 4284056 - 4284706 + | NmrA family protein TERM 4429 4284828 - 4284865 + G 76 -8.3 -4.12532 | opp_overlap 4284827 4284834 GTGCCAATGTTAAAT GACGAACCTGCCACCGA ATAT TCGGTGGCACGTAAGCC TTTGTCTATCGCCAG TERM 4430 4284859 - 4284834 - g 91 -13.3 -3.33037 | opp_overlap 4284828, overlap 4284827 ATGTTAAATGACGAA CCTGCCACCGA ATAT TCGGTGGCACG TAAGCCTTTGTCTAT hemP 4284792 - 4284983 + | hemin uptake protein TERM 4431 4287069 - 4287025 - g 74 -11 -2.79291 | gap 1, overlap 4287031 AAAGGCCAGGAAGCA TTCAAAGGCATGACCACAACA ATGT TATTG-GGTAATGCCTTCGAA AAAGAGTATTACGCG hmuR 4285114 - 4287144 + | TonB-dependent hemin receptor HmuR TERM 4432 4287177 - 4287205 + F 82 -10.3 -3.60419 | opp_overlap 4287173 GTCTGAAATCATTCA TCCGGTAATCCAT TTT GTGGCTTGCCGGA TTATCATTTGACAAT hmuS 4287263 - 4288300 + | hemin transport protein HmuS TERM 4433 4288467 - 4288502 + G 74 -9.7 -3.52102 | opp_overlap 4288468 4288470, overlap 4288468 4288471 4288473 TGACAGCACCAGTCA ACAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTGG TTATATGCGTACGCT TERM 4434 4288501 - 4288468 - g 76 -11 -3.11192 | opp_overlap 4288468 4288467 4288471 4288473, overlap 4288470 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGTACGC TERM 4435 4288468 - 4288501 + G 84 -13.2 -2.7094 | opp_overlap 4288468 4288470, overlap 4288467 4288471 4288473 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGTACGC TERM 4436 4288471 - 4288498 + G 79 -11.3 -3.50332 | opp_overlap 4288470 4288468, overlap 4288468 4288467 4288473 AGCACCAGTCAACAG CCTCAGGCAGC GCAAAA GCTGCCTGATG TTGGTTATATGCGTA TERM 4437 4288473 - 4288496 + G 85 -12.5 -3.32023 | opp_overlap 4288470 4288468, overlap 4288471 4288468 4288467 CACCAGTCAACAGCC TCAGGCAGC GCAAAA GCTGCCTGA TGTTGGTTATATGCG hmuT 4288297 - 4289136 + | hemin ABC transporter, periplasmic hemin-binding protein hmuU 4289133 - 4290137 + | hemin ABC transporter, permease protein HmuU TERM 4438 4290538 - 4290550 + G 83 -9.1 -4.4009 | CTGGCACTGGCACAG CGCGA CTA TCGCG TTTTATCCGGTGGCG hmuV 4290130 - 4290930 + | hemin importer ATP-binding subunit TERM 4439 4290970 - 4290958 - T 77 -4.7 -5.0538 | CGCTATGCTAAAAAA CAGCC TAT GGCGG TTCCAAAGCACCAAC metC2 4292252 - 4291071 - | cystathionine beta-lyase YpsIP31758_3807 4293584 - 4292298 - | putative serine transporter TERM 4440 4293960 - 4293989 + G 79 -10.1 -3.63839 | gap 1, opp_overlap 4293930 4293960 4293959 4293957 4293956 ATTAAAAAGAACCAC TCG-CAGCATCGTT TTA ACCGATGCTGGCGA TTACTTGTTTCATCA YpsIP31758_3808 4293754 - 4294737 + | LysR family substrate binding transcriptional regulator YpsIP31758_3809 4295084 - 4294815 - | hypothetical protein YpsIP31758_3810 4296295 - 4295081 - | putative inner membrane protein TERM 4441 4296388 - 4296368 - R 79 -6.9 -4.68545 | opp_overlap 4296366, overlap 4296370 AGGTAACAGAGAAAA TAGGCTTAT ATA ATAAGCCTG AGGTTATTGACAAAG TERM 4442 4296386 - 4296370 - R 83 -9.5 -3.94954 | opp_overlap 4296366, overlap 4296368 GTAACAGAGAAAATA GGCTTAT ATA ATAAGCC TGAGGTTATTGACAA TERM 4443 4296464 - 4296490 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4296453, overlap 4296459 4296465 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4444 4296465 - 4296491 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4296453, overlap 4296459 4296464 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4445 4296554 - 4296570 + r 76 -9.5 -3.40878 | overlap 4296552 TTGTCAGCAGTCTGA GGCTTAT ATA ATAAGCC TATTATTCACATAAT YpsIP31758_3811 4297745 - 4296675 - | secretion system apparatus protein SsaU epaR 4298526 - 4297732 - | type III secretion apparatus protein SpaR/YscT/HrcT YpsIP31758_3813 4298809 - 4298528 - | HrpO family type III secretion protein epaP 4299468 - 4298818 - | type III secretion system protein epaO 4300557 - 4299595 - | type III secretion system protein YpsIP31758_3816 4300933 - 4300535 - | hypothetical protein TERM 4446 4300601 - 4300613 + g 90 -9.1 -4.54449 | TAACTGATGCAGTTG CCGCT GCC AGCGG TTTTGTATGCGCTGT YpsIP31758_3817 4301315 - 4300914 - | type III secretion system protein YpsIP31758_3818 4302649 - 4301312 - | type III secretion system ATPase YpsIP31758_3819 4304684 - 4302636 - | secretion system apparatus protein SsaV TERM 4447 4303751 - 4303732 - G 81 -3.4 -5.42514 | overlap 4303733 4303734 CGATAAAGTAAAAAA GCCGGAGC CGCA ACCGCGGC CGCCAAAGTGATAAA YpsIP31758_3820 4305324 - 4304677 - | HrpE/YscL family type III secretion apparatus protein YpsIP31758_3821 4305914 - 4305321 - | hypothetical protein YpsIP31758_3823 4305969 - 4306127 + | hypothetical protein YpsIP31758_3822 4306840 - 4306109 - | YscJ/HrcJ family type III secretion apparatus lipoprotein YpsIP31758_3824 4307082 - 4306837 - | type III secretion apparatus protein, YscI/HrpB YpsIP31758_3825 4307434 - 4307186 - | type III secretion system protein SsaH family eprI 4307646 - 4307431 - | type III secretion apparatus needle protein YpsIP31758_3827 4308363 - 4307656 - | AraC family transcriptional regulator TERM 4448 4307878 - 4307860 - G 72 -6 -4.386 | overlap 4307862 GAATTTCTCATAAAA CAGGAAAT TCA ATTTCCGG GTCGAAATACCCAAT YpsIP31758_3828 4308691 - 4308470 - | type III secretion system protein YseE family YpsIP31758_3829 4309924 - 4308710 - | YscD/HrpQ family type III secretion apparatus protein YpsIP31758_3830 4311443 - 4309926 - | YscC/HrcC family type III secretion outer membrane protein YpsIP31758_3831 4311570 - 4311448 - | hypothetical protein YpsIP31758_3832 4311670 - 4314489 + | putative sensor histidine kinase/response regulator EsrA YpsIP31758_3833 4314503 - 4315135 + | putative DNA-binding response regulator EsrB TERM 4449 4315249 - 4315221 - T 100 -16.1 -5.38054 | GGCGACAAACAAAAA CTCCCCGTCAG TCTGACG CTGACGGGGAG TGGGTAGAGACTATT gltP 4316646 - 4315330 - | glutamate/aspartate:proton symporter TERM 4450 4317237 - 4317221 - H 76 -6.7 -4.43909 | opp_overlap 4317221, overlap 4317218 ATGGTAATAAAACAA CATTTAT TTA ATAAATG TAAATTACTTTAGTC acsA 4317501 - 4319459 + | acetyl-CoA synthetase TERM 4451 4319485 - 4319461 - f 76 -9.4 -3.5525 | gap 1, opp_overlap 4319461 4319462, overlap 4319462 AGACACCGTCGTAAA TTGTGCCGCCT ATAT AGGCGGCA-AA CTTAATTGATGCCTC TERM 4452 4319485 - 4319462 - f 76 -11 -2.72829 | opp_overlap 4319461 4319462, overlap 4319461 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC TERM 4453 4319462 - 4319485 + F 76 -11 -2.64199 | opp_overlap 4319461 4319462, overlap 4319461 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC YpsIP31758_3836 4319516 - 4319827 + | hypothetical protein actP 4319824 - 4321479 + | acetate permease TERM 4454 4321515 - 4321550 + T 100 -22 -4.07885 | opp_overlap 4321522 AGGGGCCTAGGTTAC TGACGAAGCCCCGGTC TCTT GGCTGGGGCTTCGTCA TTTTAGCCAACGGTC YpsIP31758_3838 4322630 - 4321548 - | hypothetical protein TERM 4455 4323301 - 4323281 - H 100 -10.4 -5.24989 | opp_overlap 4323278 GCACACAGCAAAAAA CCCCACGC TTTGG GCATGGGG TCATCATTACAACGC TERM 4456 4323367 - 4323347 - H 100 -10.4 -4.84527 | opp_overlap 4323357 TGCACACAGCAAAAA CCCCACGC TTTGG GCATGGGG CCATCATTACAACGC TERM 4457 4323431 - 4323415 - g 100 -5.8 -5.60864 | CACACAGCAAAAAAA CCACGC TTTGG GCATGG GGTTATCAGTACAAC TERM 4458 4323498 - 4323478 - g 90 -10.4 -4.34402 | opp_overlap 4323478 TCGCGCACAGCAAAA CCCCACGC TTTGG GCATGGGG TTATCAATACAACGT YpsIP31758_3839 4323356 - 4323517 + | hypothetical protein TERM 4459 4323564 - 4323544 - f 82 -6.8 -4.8048 | CGCGCACAGCAAAAA CCCCACGC TTTTG GCATGGAG TCATCATTACAACGC TERM 4460 4323631 - 4323611 - f 89 -6.8 -5.24989 | overlap 4323603 GCACACAGCAAAAAA CCCCACGC TTTTG GCATGGAG TCATCATTAAAACGC TERM 4461 4323670 - 4323704 + F 95 -9.2 -4.50627 | opp_overlap 4323677 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 4462 4323697 - 4323677 - f 100 -10.4 -4.8048 | opp_overlap 4323670 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 4463 4323935 - 4323925 - f 74 -6.8 -4.27316 | opp_overlap 4323925 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4464 4325047 - 4325058 + F 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4465 4325094 - 4325120 + F 70 -9.4 -2.75844 | opp_overlap 4325070 4325072, overlap 4325093 4325096 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4466 4325554 - 4325572 + F 82 -10.3 -3.57798 | overlap 4325547 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4467 4327010 - 4327047 + F 78 -5.7 -4.7629 | opp_overlap 4327010 4327004 4327013, overlap 4327013 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 4468 4327013 - 4327044 + F 78 -7.4 -4.47888 | opp_overlap 4327010 4327004 4327013, overlap 4327010 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA purH 4329535 - 4331124 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 4469 4332194 - 4332226 + G 80 -12 -2.87003 | overlap 4332190 4332190 GGGGGTCGTTTTAGC CGCTGGCGGTTATC CAGCA GATTACCGCCAGGG TGATGTTATTCATGG purD 4331184 - 4332470 + | phosphoribosylamine--glycine ligase YpsIP31758_3845 4333319 - 4332618 - | putative lipoprotein TERM 4470 4333293 - 4333280 - G 78 -5.2 -4.99043 | GCCGCATAAACAAAA GGGG TTTTAT CCCC CCCCTGCTTATTATT hupA 4333596 - 4333321 - | transcriptional regulator HU subunit alpha YpsIP31758_3847 4334375 - 4333785 - | hypothetical protein nfi 4335125 - 4334421 - | endonuclease V TERM 4471 4334933 - 4334917 - G 79 -10.9 -3.56959 | opp_overlap 4334916, overlap 4334908 ATATAAGGCAGAGAA GTTGCCA CTC TGGCAAC CTGGTATTCCACCAG hemE 4336258 - 4335191 - | uroporphyrinogen decarboxylase TERM 4472 4335386 - 4335403 + g 79 -9.9 -3.85698 | AACCGAAGGATCCAT GTTGCCT TGCA AGGCAAC TTTATCACCAACACG TERM 4473 4336080 - 4336062 - G 78 -11 -3.33492 | GCATCCAGCGGATAA CGACGCAG TGG CTGCATCG TGACCTCACAGGCTA YpsIP31758_3850 4337162 - 4336377 - | hypothetical protein YpsIP31758_3851 4338037 - 4337255 - | NADH pyrophosphatase rsd 4338134 - 4338643 + | anti-RNA polymerase sigma 70 factor thiC 4339018 - 4341063 + | thiamine biosynthesis protein ThiC TERM 4474 4341493 - 4341519 + G 74 -10 -3.55563 | opp_overlap 4341490 4341493 4341492, overlap 4341495 TCAGACCAAACAGAT GCCGTCATCCCC ACA GGGGTTGGCGTC TTTAAGCCGTCAGGT TERM 4475 4341495 - 4341517 + G 78 -11.2 -3.35597 | opp_overlap 4341490 4341493 4341492, overlap 4341493 AGACCAAACAGATGC CGTCATCCCC ACA GGGGTTGGCG TCTTTAAGCCGTCAG thiE 4341077 - 4341724 + | thiamine-phosphate pyrophosphorylase TERM 4476 4342210 - 4342197 - g 73 -4.5 -4.82901 | overlap 4342205 GTCGCGGCACAAAAA CCACT AATC AGCGG CAGTGCTGTAGGGTT thiF 4341714 - 4342511 + | adenylyltransferase ThiF thiG 4342725 - 4343540 + | thiazole synthase TERM 4477 4344254 - 4344264 + G 73 -3.2 -4.86731 | overlap 4344248 ACTGTTATATGCTGG CGGA GCA TCTG TTTTATTTGCAACAA thiH 4343533 - 4344663 + | thiamine biosynthesis protein ThiH TERM 4478 4344701 - 4344688 - T 70 -3.7 -4.74706 | opp_overlap 4344689, overlap 4344689 CGTAATATTGAAAAA CCGCC CGAA GGCGT AATATCAGTGAGTTA TERM 4479 4344921 - 4344881 - T 100 -11.9 -4.87389 | opp_overlap 4344892, overlap 4344885 4344891 4344892 TACTCTAAAAATAAA CAAATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATG CGCCTATAAGGCTCT TERM 4480 4344917 - 4344885 - T 100 -11.3 -4.94811 | opp_overlap 4344892, overlap 4344881 4344891 4344892 CTAAAAATAAACAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 4481 4344911 - 4344891 - T 100 -12.5 -4.01049 | opp_overlap 4344892, overlap 4344885 4344881 4344892 ATAAACAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4482 4344892 - 4344910 + T 100 -16 -4.8048 | opp_overlap 4344892 4344891 4344885 4344881 TAAACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4483 4344910 - 4344892 - T 100 -16 -2.98189 | opp_overlap 4344892, overlap 4344891 4344885 4344881 TAAACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_3858 4345500 - 4344991 - | IS1541, transposase TERM 4484 4345580 - 4345562 - R 100 -16 -3.07307 | opp_overlap 4345562 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4485 4345562 - 4345580 + r 100 -16 -4.36914 | opp_overlap 4345562 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4486 4345618 - 4345601 - R 100 -9.8 -5.93809 | opp_overlap 4345601 TGGGCACAAAAAAAA CGGCCC GAGAAG GGGCCG TTCGTCTCTCAAAAA TERM 4487 4345601 - 4345618 + r 76 -9.8 -3.32022 | opp_overlap 4345601 TGGGCACAAAAAAAA CGGCCC GAGAAG GGGCCG TTCGTCTCTCAAAAA TERM 4488 4345628 - 4345660 + r 74 -10.1 -3.21099 | gap 1, opp_overlap 4345634 4345635, overlap 4345635 GGGCCGTTCGTCTCT CAAAAACCCGCATC CCGAAA GATGCGG-TTTTTG TTGGTAGTAGGCAAA TERM 4489 4345655 - 4345634 - R 74 -6.5 -4.56597 | opp_overlap 4345628 4345635, overlap 4345635 TTCGTCTCTCAAAAA CCCGCATCC CGAA AGATGCGGT TTTTGTTGGTAGTAG TERM 4490 4345635 - 4345654 + r 100 -9.3 -5.15167 | opp_overlap 4345635 4345634, overlap 4345628 TCGTCTCTCAAAAAC CCGCATC CCGAAA GATGCGG TTTTTGTTGGTAGTA TERM 4491 4345654 - 4345635 - R 76 -10 -3.33744 | opp_overlap 4345628 4345635, overlap 4345634 TCGTCTCTCAAAAAC CCGCATCC CGAA AGATGCGG TTTTTGTTGGTAGTA rpoC 4349900 - 4345680 - | DNA-directed RNA polymerase subunit beta' TERM 4492 4348088 - 4348103 + g 71 -2.6 -5.00616 | gap 1 GGTAACAAGTGTTCA GC-ATCT TAG AGATAGC TTTTTTACCCAGCGG rpoB 4354057 - 4350029 - | DNA-directed RNA polymerase subunit beta TERM 4493 4350127 - 4350137 + g 78 -5.4 -4.91459 | overlap 4350134 CCATACGGTGATCGC CATC CAC GATG TTTTTGTACATCTTG TERM 4494 4351015 - 4351031 + g 100 -10.9 -4.56314 | CGTCGTACTGCTCTG CCAACTG TTC CAGTTGG TTTTGCTTGTCTTCG TERM 4495 4353403 - 4353389 - G 73 -8.6 -3.9122 | opp_overlap 4353377 CACTTTCTCAAAGAA CAGATC CAA GATCTG TGCAGTGGTGAAATT TERM 4496 4354360 - 4354335 - R 100 -14.1 -4.64766 | CCTACAGCGCAAAAA GGCTGATGACT AAAA AGTCACCAGCC ATCAGCCTATAAAGT rplL 4354768 - 4354400 - | 50S ribosomal protein L7/L12 rplJ 4355332 - 4354835 - | 50S ribosomal protein L10 TERM 4497 4355372 - 4355354 - R 95 -13.2 -3.14132 | TTGCTCCTGGATTAA CCGGAGAA TAA TTCTCCGG AACTCACGTCACCCA TERM 4498 4355410 - 4355389 - R 71 -9.5 -3.06915 | ACTCACGTCACCCAA TTCACGACA AAAT TGCCGTGAA CGAGCGTTGAAACAC TERM 4499 4355454 - 4355489 + r 73 -3.5 -4.94962 | opp_overlap 4355484, overlap 4355484 CAGCAAAGACTATTC TTTATCATTCTTTAT AAACAA ATAAAGAAAGAAAAA TTTTCTTTAGGTTCT TERM 4500 4355494 - 4355484 - R 71 -4 -4.88895 | opp_overlap 4355454 4355484 AAACAAATAAAGAAA GAAA AAT TTTC TTTAGGTTCTGTCAC TERM 4501 4355674 - 4355633 - R 77 -10.4 -3.16553 | gap 1, overlap 4355631 4355635 4355638 4355660 ACAACGATCAACAGA TAGCATGGGCGTAAGATTC TAGAC AAACCTTACGCCCACG-TA AAGCGATAAAAGCAA TERM 4502 4355673 - 4355635 - R 79 -11.1 -3.13565 | overlap 4355633 4355631 4355638 4355660 AACGATCAACAGATA GCATGGGCGTAAGATTC TAGAC AAACCTTACGCCCACGT AAAGCGATAAAAGCA TERM 4503 4355670 - 4355638 - R 93 -13.6 -2.76689 | overlap 4355635 4355633 4355631 4355660 GATCAACAGATAGCA TGGGCGTAAGATTC TAGAC AAACCTTACGCCCA CGTAAAGCGATAAAA rplA 4356401 - 4355697 - | 50S ribosomal protein L1 rplK 4356833 - 4356405 - | 50S ribosomal protein L11 TERM 4504 4356983 - 4356955 - R 100 -16.2 -5.2853 | CATCTAAAAACAAAA GGCGCGAAATTA TATTT TAATTTCGCGCC TAAGACAAGACTCAA nusG 4357569 - 4357024 - | transcription antitermination protein NusG TERM 4505 4357638 - 4357595 - R 74 -6.8 -4.25056 | gap 1, overlap 4357604 CAGGCCAGTAATAAA TGATACCAAGCGGACTAGGAT ACC ATCC-AGTCCCCATAGAATCA GTGACATTACAGCAG secE 4357954 - 4357571 - | preprotein translocase subunit SecE TERM 4506 4358013 - 4357989 - R 79 -7.9 -4.28115 | overlap 4357982 4357990 ATTCAGAACAAACAA CTTTGCTTCGC ATC GCAAAGCAAAC CAAGCCGAAGGATGC TERM 4507 4358012 - 4357990 - R 84 -11.4 -3.15784 | overlap 4357982 4357989 TTCAGAACAAACAAC TTTGCTTCGC ATC GCAAAGCAAA CCAAGCCGAAGGATG TERM 4508 4358163 - 4358180 + r 100 -11.3 -4.41548 | opp_overlap 4358163 TGCAACGTATAAAAA GGGCATC AAAT GATGCCC TTTTATCGCATGTCG TERM 4509 4358180 - 4358163 - R 100 -11.3 -4.91712 | opp_overlap 4358163 TGCAACGTATAAAAA GGGCATC AAAT GATGCCC TTTTATCGCATGTCG tuf2 4359389 - 4358205 - | elongation factor Tu YpsIP31758_3868 4360378 - 4360923 + | acetyltransferase TERM 4510 4361069 - 4361045 - T 93 -9.9 -4.29106 | opp_overlap 4361048, overlap 4361047 4361048 GTCTACACCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4511 4361067 - 4361047 - T 100 -12.5 -3.7456 | opp_overlap 4361048, overlap 4361045 4361048 CTACACCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4512 4361048 - 4361066 + T 100 -16 -4.8048 | opp_overlap 4361048 4361047 4361045 TACACCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4513 4361066 - 4361048 - T 100 -16 -2.84013 | opp_overlap 4361048, overlap 4361047 4361045 TACACCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_3869 4361656 - 4361147 - | IS1541, transposase TERM 4514 4361718 - 4361736 + H 100 -16 -4.36914 | opp_overlap 4361718 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4515 4361736 - 4361718 - H 100 -16 -3.07307 | opp_overlap 4361718 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4516 4361780 - 4361754 - H 91 -8 -4.82901 | opp_overlap 4361755, overlap 4361755 TTCTGGGCACAAAAA CCAAGCTGCCTA TAA TATGCAGCTTGT TTCTTATCTGGAGTT TERM 4517 4361755 - 4361779 + H 100 -11.5 -4.39329 | opp_overlap 4361754 4361755 TCTGGGCACAAAAAC CAAGCTGCCTA TAA TATGCAGCTTG TTTCTTATCTGGAGT TERM 4518 4361779 - 4361755 - H 89 -11.5 -3.49419 | opp_overlap 4361755, overlap 4361754 TCTGGGCACAAAAAC CAAGCTGCCTA TAA TATGCAGCTTG TTTCTTATCTGGAGT TERM 4519 4361974 - 4361950 - g 75 -5.7 -4.55093 | TGACAGAAGAAGAAA TCGTTAAACTC AAA GGGATTAACGA AGACCTTTCATTAGA TERM 4520 4362293 - 4362279 - g 100 -8.6 -5.5604 | opp_overlap 4362279 CTAATGAAGAAAAAA GGATTC CCG GAATCC TATGATATGCATAAT coaA 4361844 - 4362794 + | pantothenate kinase TERM 4521 4362802 - 4362819 + T 71 -9.9 -2.63723 | opp_overlap 4362799 4362796 4362792, overlap 4362801 GAAAATAATCTATAC GGGAGAT AGTT ATCTCCC ATTAATTAATCAGAC birA 4363788 - 4362829 - | biotin--protein ligase murB 4364822 - 4363785 - | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 4522 4365241 - 4365275 + H 95 -9.2 -4.50627 | opp_overlap 4365248 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 4523 4365268 - 4365248 - H 100 -10.4 -4.8048 | opp_overlap 4365241 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 4524 4365506 - 4365496 - H 74 -6.8 -4.27316 | opp_overlap 4365496 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4525 4366618 - 4366629 + H 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4526 4366665 - 4366691 + H 70 -9.4 -2.75844 | opp_overlap 4366641 4366643, overlap 4366664 4366667 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4527 4367125 - 4367143 + H 82 -10.3 -3.57798 | overlap 4367118 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4528 4371326 - 4371312 - g 70 -7.8 -3.87075 | opp_overlap 4371316, overlap 4371316 ACTATTGGTCATAAA GCCATG CTA CACGGC TGTACCATTGGTAAC YpsIP31758_3876 4371036 - 4371578 + | hypothetical protein aroE 4372454 - 4371633 - | shikimate 5-dehydrogenase rimN 4373035 - 4372463 - | putative ribosome maturation factor TERM 4529 4372538 - 4372521 - G 74 -9.1 -3.67792 | overlap 4372531 TCAGATGGATTCAAA CGGCCAC CAAC GTGACCG GATAACACCGGTAAT YpsIP31758_3879 4373576 - 4373037 - | topoisomerase DNA binding C4 zinc finger domain-containing protein smg 4374090 - 4373617 - | hypothetical protein dprA 4375183 - 4374062 - | hypothetical protein TERM 4530 4374508 - 4374486 - GH 72 -7.1 -3.91084 | gap 1, overlap 4374488 CGAGCGGTAATCAAA GA-GCCACTT TTTA AAGTGGCCTC AACGACTAACACAGC TERM 4531 4374505 - 4374488 - GH 78 -9.9 -3.54414 | overlap 4374486 AGCGGTAATCAAAGA GCCACTT TTTA AAGTGGC CTCAACGACTAACAC def 4375318 - 4375830 + | peptide deformylase TERM 4532 4375900 - 4375924 + G 91 -15 -3.17622 | overlap 4375904 GGAACTCCTGATTTT GCAGCGCGCC ATTTA GGCGCGTTGC TCTCTTCTCAACATA TERM 4533 4375904 - 4375920 + G 78 -10.8 -3.40191 | overlap 4375900 CTCCTGATTTTGCAG CGCGCC ATTTA GGCGCG TTGCTCTCTTCTCAA TERM 4534 4376203 - 4376231 + G 70 -9.5 -3.12351 | GGTTCGTTACTCCCA CGTTGGCGTGGTG CAG CACCGATCCAACG TTCAGTATGGGCGGG TERM 4535 4376334 - 4376318 - g 78 -8.1 -4.37886 | CTATGCTGCATAAAA TTGAATG TGC CATTCAA CCAGAAGATACCAGT fmt 4375855 - 4376802 + | methionyl-tRNA formyltransferase TERM 4536 4376870 - 4376885 + F 89 -6.8 -5.32944 | CTTCTCCCTTTATTT GCTGGC GTTT GTCAGC TTTTTTGGTTATGAA TERM 4537 4378148 - 4378128 - g 78 -5.3 -4.86731 | opp_overlap 4378123 GCCTGGTAAACAAAA CCTTCCACA TCC TGAGGACGG TGATGGTTTCTTCTA rsmB 4376896 - 4378185 + | 16S rRNA methyltransferase B TERM 4538 4379236 - 4379216 - g 77 -3.9 -5.00884 | ATGGGTGCGAAAAAA GCGATGG TACTTAT CCAACGC AGTGCTTACGTCGAT trkA 4378241 - 4379617 + | potassium transporter peripheral membrane component TERM 4539 4379992 - 4380006 + G 73 -3.6 -4.95547 | TTATGGTACATTTAT TCAAAG CAT TTTTGA TTTTGTTATTGTAGC mscL 4379756 - 4380169 + | large-conductance mechanosensitive channel TERM 4540 4380327 - 4380282 - T 100 -17.1 -2.90615 | opp_overlap 4380280 4380319, overlap 4380285 ATTTCTTTTAAATCA GAAGGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCCTCC CAGTTACTACCTTTT TERM 4541 4380324 - 4380285 - T 100 -15.2 -3.60151 | opp_overlap 4380280 4380319, overlap 4380282 TCTTTTAAATCAGAA GGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCC TCCCAGTTACTACCT YpsIP31758_3887 4380479 - 4380279 - | hypothetical protein zntR 4380992 - 4380567 - | zinc-responsive transcriptional regulator TERM 4542 4381393 - 4381430 + r 100 -20.1 -3.62032 | opp_overlap 4381405, overlap 4381394 4381405 AAGCTGTATATGGTG GGCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGCG TTTACAGATTACTCT TERM 4543 4381394 - 4381429 + r 100 -23.6 -2.76737 | opp_overlap 4381405, overlap 4381393 4381405 AGCTGTATATGGTGG GCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGC GTTTACAGATTACTC TERM 4544 4381418 - 4381405 - R 100 -9.5 -5.40072 | opp_overlap 4381394 4381393 4381405 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT TERM 4545 4381405 - 4381418 + r 100 -9.5 -5.4477 | opp_overlap 4381405, overlap 4381394 4381393 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT rplQ 4381828 - 4381439 - | 50S ribosomal protein L17 TERM 4546 4381557 - 4381583 + g 75 -11.4 -2.73123 | opp_overlap 4381541 4381554 CGAGTGTAACCACCG GCGCGGCTCGCG AAA CGCGGGCCTAGC TCGTTAAACAGTTTT TERM 4547 4381779 - 4381751 - G 77 -10.4 -3.57246 | gap 1, overlap 4381749 4381769 ATGACGAACCAAAGA GCC-GGCCATGTT ACGG AACATAGCCTGGC GATGGCTGCTGTTAC rpoA 4382858 - 4381869 - | DNA-directed RNA polymerase subunit alpha TERM 4548 4381952 - 4381964 + g 75 -3.4 -5.01732 | CGAGCACGTCTTTAA TCTC AGTAA GAGA TTTTTTACCCAGGTT TERM 4549 4382899 - 4382881 - R 77 -10.4 -3.14132 | TCTCTTTGGTACTAA GCTTTACT TGG AGTAAAGC TCGACGATCAGGTGT rpsD 4383504 - 4382884 - | 30S ribosomal protein S4 TERM 4550 4383545 - 4383529 - R 82 -7.9 -4.42851 | opp_overlap 4383528 4383529 CCAACAAACCTAAAA GCAGCGT TAT ACGCGGC GCTTTTTCGGCGGAC rpsK 4383924 - 4383535 - | 30S ribosomal protein S11 rpsM 4384297 - 4383941 - | 30S ribosomal protein S13 TERM 4551 4384414 - 4384385 - R 100 -12.3 -4.61868 | gap 1 CAGTCACATACAAAA GATTG-GCTGGCTA ATC TAGCCAGCTCAACC CAACTTTGCAAGAAA secY 4385926 - 4384595 - | preprotein translocase subunit SecY TERM 4552 4385492 - 4385463 - G 78 -7.9 -4.45168 | overlap 4385487 GCGGTAAAATAGAAA GCAAAGCCTGG ATTGATTA CCAGACCTTGC ATCCCAGGCATATTC rplO 4386368 - 4385934 - | 50S ribosomal protein L15 rpmD 4386551 - 4386372 - | 50S ribosomal protein L30 rpsE 4387057 - 4386554 - | 30S ribosomal protein S5 TERM 4553 4386851 - 4386871 + g 73 -4.6 -4.67353 | opp_overlap 4386849, overlap 4386849 AACGTTAATCATAGC GCGACGGG CTTTT TCCATCGC TTTTTGGATCGCTGC rplR 4387425 - 4387072 - | 50S ribosomal protein L18 rplF 4387968 - 4387435 - | 50S ribosomal protein L6 rpsH 4388375 - 4387983 - | 30S ribosomal protein S8 rpsN 4388714 - 4388409 - | 30S ribosomal protein S14 TERM 4554 4388672 - 4388693 + g 76 -8.7 -4.02021 | overlap 4388673 4388675 ATTTGTTAGCTAGTT TCACGCGAA CAAC TTCGCGTGC TTTCATTGATTGCTT TERM 4555 4388673 - 4388692 + g 81 -12.2 -3.00128 | overlap 4388672 4388675 TTTGTTAGCTAGTTT CACGCGAA CAAC TTCGCGTG CTTTCATTGATTGCT rplE 4389267 - 4388728 - | 50S ribosomal protein L5 TERM 4556 4389105 - 4389123 + g 73 -7.4 -4.30987 | opp_overlap 4389104, overlap 4389090 TTGCTGCCAAGTCAG CTGCTGCA TTA TCCAGCAG TTTCTTGTCAGCGAT rplX 4389596 - 4389282 - | 50S ribosomal protein L24 rplN 4389978 - 4389607 - | 50S ribosomal protein L14 TERM 4557 4390135 - 4390109 - R 100 -10.2 -5.24531 | opp_overlap 4390109 4390112 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG TERM 4558 4390109 - 4390135 + r 70 -8 -3.69069 | opp_overlap 4390109, overlap 4390112 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG TERM 4559 4390217 - 4390193 - R 100 -9.9 -4.46835 | opp_overlap 4390196, overlap 4390195 4390196 ACAACGCGAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4560 4390215 - 4390195 - R 100 -12.5 -3.8323 | opp_overlap 4390196, overlap 4390193 4390196 AACGCGAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4561 4390196 - 4390214 + r 100 -16 -4.8048 | opp_overlap 4390195 4390193 4390196 ACGCGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4562 4390214 - 4390196 - R 100 -16 -2.88854 | opp_overlap 4390196, overlap 4390195 4390193 ACGCGAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YpsIP31758_3905 4390804 - 4390295 - | IS1541, transposase TERM 4563 4390884 - 4390866 - R 100 -16 -3.07307 | opp_overlap 4390866 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC TERM 4564 4390866 - 4390884 + r 100 -16 -4.36914 | opp_overlap 4390866 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAC rpsQ 4391124 - 4390858 - | ribosomal protein s17 rpmC 4391315 - 4391124 - | 50S ribosomal protein L29 rplP 4391725 - 4391315 - | 50S ribosomal protein L16 rpsC 4392436 - 4391738 - | 30S ribosomal protein S3 TERM 4565 4392290 - 4392322 + g 74 -10 -3.61654 | overlap 4392291 GCGAGAAACGGAAGC TTTCGCTAATTCCT TAGTC AGGAATTGGCGAAC TTTAAAGTCGCTGTC TERM 4566 4392291 - 4392321 + g 85 -13.5 -2.76671 | overlap 4392290 CGAGAAACGGAAGCT TTCGCTAATTCCT TAGTC AGGAATTGGCGAA CTTTAAAGTCGCTGT rplV 4392786 - 4392454 - | 50S ribosomal protein L22 rpsS 4393079 - 4392801 - | 30S ribosomal protein S19 rplB 4393918 - 4393094 - | 50S ribosomal protein L2 TERM 4567 4393953 - 4393973 + r 80 -9.7 -3.57462 | opp_overlap 4393956, overlap 4393956 CTCTGCGCCGCCGAT GAAGTCCAG ATT CTGGCCTTC TTTCAGGGTGACGTA rplW 4394237 - 4393935 - | 50S ribosomal protein L23 rplD 4394839 - 4394234 - | 50S ribosomal protein L4 TERM 4568 4394807 - 4394819 + g 77 -10.5 -3.54414 | opp_overlap 4394802, overlap 4394806 TTCGGAAACAGTCAG CGCGC CTG GCGCG TCTTTCATTACCAAT rplC 4395485 - 4394856 - | 50S ribosomal protein L3 rpsJ 4395829 - 4395518 - | ribosomal protein S10 bfr 4396716 - 4396243 - | bacterioferritin, iron storage and detoxification protein TERM 4569 4397093 - 4397078 - R 100 -10.4 -5.5112 | opp_overlap 4397078 TTTATCAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT TERM 4570 4397078 - 4397093 + r 91 -10.4 -4.10953 | opp_overlap 4397078 TTTATCAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT tuf1 4398312 - 4397128 - | elongation factor Tu TERM 4571 4398328 - 4398361 + r 77 -10.3 -3.10579 | overlap 4398325 GACTATATTCCTTAC TCTTGTGCTCTCCCA CTAA TGAGAGAGCACTGGA TCATTGTTTTAAACC fusA 4400492 - 4398384 - | elongation factor G rpsG 4401056 - 4400586 - | 30S ribosomal protein S7 rpsL 4401527 - 4401153 - | 30S ribosomal protein S12 tusB 4401952 - 4401665 - | tRNA 2-thiouridine synthesizing protein B tusC 4402337 - 4401972 - | hypothetical protein TERM 4572 4402154 - 4402165 + g 77 -3 -5.30686 | overlap 4402159 AAGTAGCAATATAGT TTCT GGCA AGAA TTTTTTCTGGCTGTT tusD 4402732 - 4402337 - | hypothetical protein YpsIP31758_3925 4403454 - 4402732 - | hypothetical protein TERM 4573 4403677 - 4403654 - R 100 -9.6 -6.22802 | opp_overlap 4403654 GCGCACAAAAAAAAA CCGTCACGAC AATT ATCGTAACGG TTATGAGAAAAGTGT YpsIP31758_3926 4404508 - 4403708 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4574 4403870 - 4403884 + g 80 -2.8 -5.41359 | opp_overlap 4403870, overlap 4403855 TGGCGGGATAACCAA GGTG ATTTTGC CACC TTTTTTGATTTGCTT YpsIP31758_3927 4404823 - 4405041 + | hypothetical protein TERM 4575 4405226 - 4405194 - T 77 -10.7 -2.87931 | opp_overlap 4405201 4405225, overlap 4405201 GTGATCGCGTACAGA GTAAAAAGCCAGC GATGAAG GCTGGCTTTTTGC TGACGGGGTCAGATA TERM 4576 4405201 - 4405219 + T 81 -7.4 -4.72272 | opp_overlap 4405201 4405194 CGTACAGAGTAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG TERM 4577 4405219 - 4405201 - T 85 -7.4 -4.84527 | opp_overlap 4405201, overlap 4405194 CGTACAGAGTAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG slyD 4405841 - 4405242 - | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 4578 4405815 - 4405826 + g 74 -4.4 -4.85545 | CTGGTAAGCCAGGCT GACT ACCA AGTC TTTTGTTACTTTCAT YpsIP31758_3929 4406157 - 4405936 - | hypothetical protein kefB 4407981 - 4406173 - | glutathione-regulated potassium-efflux system protein KefB kefG 4408533 - 4407985 - | glutathione-regulated potassium-efflux system ancillary protein KefG TERM 4579 4409114 - 4409098 - g 100 -6.5 -5.63103 | overlap 4409099 CGCCAATGAAAAAAA TGATGGC CAT GCCATCG CAACCGTGCACGGTA TERM 4580 4409113 - 4409099 - g 81 -10 -3.96777 | overlap 4409098 GCCAATGAAAAAAAT GATGGC CAT GCCATC GCAACCGTGCACGGT TERM 4581 4410468 - 4410456 - g 74 -9.1 -3.65199 | opp_overlap 4410463 4410464 AATTCCGCACTCAAA CGCAG CCA CTGCG TAAGCAGATTATGAC YpsIP31758_3932 4408784 - 4410706 + | putative ABC transporter ATP-binding protein TERM 4582 4410791 - 4410758 - f 73 -9.7 -3.04263 | opp_overlap 4410780 4410784, overlap 4410760 ATGGCATCGTGAATA TAGTCGTGCGAAT TGAGTTAG AGTCGCACGACTA GAGCGGCGTGATTTT YpsIP31758_3933 4410841 - 4411830 + | glycosyl transferase, group 2 family protein YpsIP31758_3934 4411923 - 4412903 + | heptosyltransferase family protein tauD 4413764 - 4412916 - | taurine dioxygenase tauC 4414615 - 4413761 - | taurine transporter subunit TERM 4583 4414047 - 4414033 - G 80 -7 -4.64846 | overlap 4414035 CCACAAACCATAAAA CCTGCC AAC GGCTGG CACCTAATGCACGGG tauB 4415379 - 4414612 - | taurine transporter ATP-binding subunit TERM 4584 4415050 - 4415070 + g 78 -9 -4.0274 | gap 1 CCGGTTTAGCATTTT CAG-GGCGG TTAC CCGCCGCTG TTCTTTACTCATCCC tauA 4416431 - 4415388 - | taurine transporter substrate binding subunit TERM 4585 4416557 - 4416519 - R 83 -12.1 -2.74597 | opp_overlap 4416526, overlap 4416526 4416530 4416535 CCGAGAGAGAGAGCA GCATAAAGGAATAAA AGAATATTG TTTATTCCTTTATGC GATAACAGATGTACT YpsIP31758_3939 4417236 - 4416634 - | LysE family translocator protein TERM 4586 4417525 - 4417549 + G 71 -5 -4.58283 | overlap 4417527 AGAAGCCCCGAGTGG TACTCTTCCA CGGTT TGGAAGGGAA TTTTTACAGCCCTTA YpsIP31758_3940 4417338 - 4418318 + | putative hydrolase TERM 4587 4418444 - 4418429 - g 77 -4.6 -4.99035 | opp_overlap 4418433, overlap 4418431 TCACTGACAGAAAAA GTCGCA GACG TGCGCC GTCAGTTGGTCAGTG YpsIP31758_3941 4418315 - 4418551 + | hypothetical protein TERM 4588 4419043 - 4419075 + G 74 -4 -4.84311 | gap 1, overlap 4419044 TCCCTGGCACCTTTA C-TCCTTGGGAGCCG CTAC CGGAACCCACGGATG TTTTATTCTATGAAG TERM 4589 4419044 - 4419073 + G 73 -7.7 -4.03793 | overlap 4419043 CCCTGGCACCTTTAC TCCTTGGGAGCCG CTAC CGGAACCCACGGA TGTTTTATTCTATGA TERM 4590 4419385 - 4419421 + G 73 -8.7 -3.90038 | overlap 4419377 CGTTAGACGAAAGTT TCGTTGTGATCCATTTC CGT GGTTTGGATCACATCGA TTTCCCTTATTTGCT YpsIP31758_3942 4418700 - 4419569 + | putative phosphoribulokinase YpsIP31758_3943 4420145 - 4419747 - | hypothetical protein TERM 4591 4420113 - 4420083 - G 95 -8.3 -5.3167 | overlap 4420106 GAAAAACAAAGAAAA TGAGGCGACAACA AACAA TGATATCGCCCCA CAGGCAACCGATATT TERM 4592 4420238 - 4420215 - R 93 -8.9 -4.56775 | opp_overlap 4420215 4420236 4420237 ATTTTGGCCTAAAAA CCCATAACC AAACCG GGCTATGGG TGGTTCACCATTTAC YpsIP31758_3944 4420657 - 4420250 - | hypothetical protein crp 4420994 - 4421626 + | cAMP-regulatory protein TERM 4593 4421640 - 4421664 + F 100 -15.8 -4.75063 | opp_overlap 4421640 AATTCCCTCTAAAAA CCGGCGCTAA AGCTA TTAGCGCCGG TTTTTCCCGTTTTCT TERM 4594 4421664 - 4421640 - f 100 -15.8 -4.57341 | opp_overlap 4421640 AATTCCCTCTAAAAA CCGGCGCTAA AGCTA TTAGCGCCGG TTTTTCCCGTTTTCT TERM 4595 4422294 - 4422282 - g 75 -5.5 -4.66833 | CTTGAACCCGAAAAA GCGAT ACC ACCGC TACTCGATAGACAAC TERM 4596 4423268 - 4423256 - g 73 -5.5 -4.56597 | opp_overlap 4423259 GTTGTTGCGTAAAAA TGCCC ATC AGGCA CTGGAGGCTTATCAG TERM 4597 4423543 - 4423509 - g 74 -10.9 -2.7682 | gap 1, overlap 4423508 CTGATCAGAGAGAAT CCATTGACTGA-GGTG GACT CACCATCAACCAATGG TCATCCACTCATGAG YpsIP31758_3946 4421706 - 4423826 + | YccS/YhfK family integral membrane protein TERM 4598 4423850 - 4423830 - T 91 -7.6 -4.76312 | gap 1, overlap 4423832 GATAATACGTAAAAA GAGAGAGGC TAGC GCCTCTC-C ATAACGCGGTTATTG TERM 4599 4423849 - 4423832 - T 100 -11.3 -3.98606 | overlap 4423830 TAATACGTAAAAAGA GAGAGGC TAGC GCCTCTC CATAACGCGGTTATT argD 4425088 - 4423871 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein pabA 4425796 - 4425221 - | para-aminobenzoate synthase component II YpsIP31758_3949 4427581 - 4426040 - | hypothetical protein TERM 4600 4426521 - 4426562 + g 71 -6.4 -4.26903 | overlap 4426531 TGTTCAGCACTGAAT GCCGGATTAGGCCGCATC GTCTGA GCTGCGGCTTTAACCGCC TTTTGATCCCGTGGC ppiA 4428476 - 4427907 - | peptidyl-prolyl cis-trans isomerase A (rotamase A) TERM 4601 4428695 - 4428663 - H 81 -11.3 -2.8194 | opp_overlap 4428658, overlap 4428654 TAATGAGTCACCACA TCCCAGACTCCAGCA AGA TTCTGGAGTCTGGAT CACGATTCTCTTACT TERM 4602 4428785 - 4428798 + H 81 -5.3 -5.18371 | opp_overlap 4428785 CTAATCTGCTTCAAA TGAGA GCGC TCTCA TTTTGTTTTCTGCAA TERM 4603 4428901 - 4428869 - H 86 -12.2 -3.00498 | gap 1, opp_overlap 4428868 4428867 4428871, overlap 4428871 4428873 GAGACCGTACAGAGA CAGACTCACC-TGAT GAAA ATCATGGTGAGCCTG AATTTATCCACAGAT TERM 4604 4428980 - 4428990 + H 71 -8.2 -3.53811 | ACTGAACTTTATCGC CGGC AGA GCCG TTTGGAGCCCCTACA celF 4429006 - 4430319 + | 6-phospho-beta-glucosidase TERM 4605 4430784 - 4430804 + G 76 -2.4 -5.18357 | overlap 4430785 ACGCTGGGGTTGGTG ACCACCTC ATACC GAGGGGGC TTTTTTGGTGCCTTA TERM 4606 4430913 - 4430898 - g 73 -7.6 -4.10179 | GATAATGCAGATAAA GAATGG TTAG CCATTC AGCGGCTGTATAACT YpsIP31758_3952 4430589 - 4431575 + | LacI family sugar-binding transcriptional regulator TERM 4607 4431647 - 4431624 - T 100 -14.6 -3.16921 | opp_overlap 4431624 ATTAATTGTTATTAA CGTGGCAAGC CATG GCCTGCCACG TTCTGCTAGCGCATT TERM 4608 4431624 - 4431647 + T 100 -12.4 -3.40899 | opp_overlap 4431624 ATTAATTGTTATTAA CGTGGCAAGC CATG GCCTGCCACG TTCTGCTAGCGCATT oprC 4433715 - 4431670 - | TonB-dependent copper receptor OprC TERM 4609 4432566 - 4432588 + g 71 -2.7 -4.8543 | gap 1, opp_overlap 4432566, overlap 4432566 4432567 TTAACTCACCGAACA C-CCCGTTAT TCAT AAAACGGGCG TTTTTATCCCAGTTC TERM 4610 4433465 - 4433442 - G 72 -11 -2.68823 | opp_overlap 4433429, overlap 4433441 4433444 TGGTCCTCAGATAAT CAGTACCGTC ACTG GCCGGTACTG GCTGGCGGGGCACTT tsgA 4434201 - 4435385 + | hypothetical protein TERM 4611 4435400 - 4435428 + T 100 -14.6 -3.2827 | overlap 4435402 ATTTATCTGCGTTAC TGCCCTGCCGCC GCCAA GGTGGCAGGGTA TTGATGATTCACTAA TERM 4612 4435402 - 4435426 + T 100 -15 -3.20494 | overlap 4435400 TTATCTGCGTTACTG CCCTGCCGCC GCCAA GGTGGCAGGG TATTGATGATTCACT codA 4436780 - 4435470 - | cytosine deaminase TERM 4613 4436212 - 4436197 - G 90 -10.4 -4.35524 | CGGGTAAATTCAAAA TGGGGG ATCG CCCCCA CCGCATCCGCACCCA TERM 4614 4436596 - 4436583 - G 75 -8.1 -4.15222 | ATGCGGCTCAATAAA TGGCG GGAG CGCCA AACCGCCCTGCGCAT TERM 4615 4437121 - 4437106 - g 95 -7.6 -5.50723 | TGAGCAAAATAAAAA TTGCCA TCAT TGGCAA CGGCATGGTCGGCCA TERM 4616 4439238 - 4439226 - g 79 -10.5 -3.73072 | opp_overlap 4439225 4439226 AACGGCGGCATGAAA CCGCG TCA CGCGG ATTTACTGGCAGCCG TERM 4617 4439226 - 4439238 + G 71 -10.5 -2.83403 | opp_overlap 4439226, overlap 4439225 AACGGCGGCATGAAA CCGCG TCA CGCGG ATTTACTGGCAGCCG nirB 4437090 - 4439636 + | nitrite reductase [NAD(P)H], large subunit nirD 4439633 - 4439959 + | nitrite reductase small subunit fnt 4440150 - 4440956 + | nitrite transporter NirC cysG1 4441019 - 4442440 + | siroheme synthase TERM 4618 4442514 - 4442537 + T 76 -11 -2.53641 | opp_overlap 4442515, overlap 4442513 GGTTAATGCTGATTA ATGAGGGGGA AATT TCCCCCTCAC ATTACTGATGCGTTG TERM 4619 4442536 - 4442515 - T 100 -14.5 -3.16742 | opp_overlap 4442514 4442513 GTTAATGCTGATTAA TGAGGGGGA AATT TCCCCCTCA CATTACTGATGCGTT trpS 4443599 - 4442559 - | tryptophanyl-tRNA synthetase gph2 4444299 - 4443601 - | phosphoglycolate phosphatase TERM 4620 4444086 - 4444060 - G 70 -8 -3.79882 | overlap 4444083 ATAATAGTGATCAAA CAGCTCGCGG GTCTGTG CCACAAGCTG AGCATTATGTTCACG rpe 4444969 - 4444292 - | ribulose-phosphate 3-epimerase dam 4446087 - 4445272 - | DNA adenine methylase TERM 4621 4445625 - 4445613 - G 87 -5.5 -5.38054 | opp_overlap 4445613 4445614, overlap 4445607 4445614 GCTCACAAACAAAAA CCGCA TTT TGCGA TTTTTCAGCAAACCA TERM 4622 4445647 - 4445667 + g 80 -3.9 -5.24129 | AGCAAACCAATATAA CTCCGCTTC TGG GAAGTAGGG TTTTTTGTAGCGACC TERM 4623 4445734 - 4445711 - G 74 -9 -3.69094 | AATTCACCACTCAAA TTATAACGAC ACAG GCCGTTATAA CAGTGGCGATTGAGA YpsIP31758_3964 4447160 - 4446171 - | hypothetical protein aroB 4448502 - 4447414 - | 3-dehydroquinate synthase aroK 4449080 - 4448559 - | shikimate kinase I hofQ 4450805 - 4449429 - | putative outer membrane porin HofQ TERM 4624 4449590 - 4449606 + g 71 -8.7 -3.62418 | AAATCCCGCCCAGCA CGATGGT TTC GCCATCG TTTACAGTAACTTGT YpsIP31758_3968 4451369 - 4451010 - | hypothetical protein YpsIP31758_3969 4451970 - 4451389 - | hypothetical protein YpsIP31758_3970 4452568 - 4451963 - | fimbrial assembly protein PilN YpsIP31758_3971 4453464 - 4452568 - | hypothetical protein TERM 4625 4452691 - 4452680 - G 71 -7.2 -4.10657 | TGATAGTGCGCAAAA GCCG TTAG CGGC GACCAAGACCGTGTG TERM 4626 4452984 - 4452974 - G 73 -8.2 -3.83323 | GCCATATAACGTAAA GCGC ATG GCGC AATATCAATCACTTG TERM 4627 4453028 - 4453010 - G 73 -8.8 -3.96327 | ACTTGTGAGGATAAA CCCGCCTG TTC CAAGCAGG CTTGCCATTGCTGCA TERM 4628 4454788 - 4454775 - g 70 -2.3 -5.00616 | overlap 4454776 4454777 4454779 CCGGTCCCCAAAAAA GCGAC TGAT GTCGT TCAGCCTGGTCAGCA mrcA 4453584 - 4456139 + | peptidoglycan synthetase TERM 4629 4456208 - 4456160 - T 95 -7.8 -5.00616 | gap 1, opp_overlap 4456173, overlap 4456172 4456173 GCCTGGTGTAAAAAA CTTATCTAAAAAGCCAGATGATC TGAT GATCATCTGGTTTTTTT-ATAAA TTACTCGTATAAAAA TERM 4630 4456197 - 4456172 - T 100 -10.5 -4.69027 | opp_overlap 4456173, overlap 4456160 4456173 AAACTTATCTAAAAA GCCAGATGATC TGAT GATCATCTGGT TTTTTTATAAATTAC TERM 4631 4456196 - 4456173 - T 100 -14 -3.40331 | opp_overlap 4456173, overlap 4456172 4456160 AACTTATCTAAAAAG CCAGATGATC TGAT GATCATCTGG TTTTTTTATAAATTA TERM 4632 4456173 - 4456196 + T 100 -14 -5.66684 | opp_overlap 4456173 4456172 4456160 AACTTATCTAAAAAG CCAGATGATC TGAT GATCATCTGG TTTTTTTATAAATTA nudE 4456821 - 4456276 - | ADP-ribose diphosphatase NudE TERM 4633 4456517 - 4456507 - G 73 -8.2 -3.89617 | AGCGAGAAAGTCAAA GCGC TCA GCGC CATATCCAACTTCTT TERM 4634 4457960 - 4457947 - g 71 -3.8 -4.68593 | TTCAGTATCGAAAAA TGCG TCTATT CGCA AAGAAGATAGCGAAC TERM 4635 4459142 - 4459155 + G 75 -3.7 -5.14563 | opp_overlap 4459140, overlap 4459140 GAAGCGTTGAATAGC CCACC TCCG GGCGG TTTTTTGATCACCAG YpsIP31758_3974 4457408 - 4459555 + | intracellular growth attenuator family protein YpsIP31758_3975 4459699 - 4460379 + | HAD family hydrolase hslR 4460408 - 4460815 + | heat shock protein 15 TERM 4636 4461238 - 4461209 - g 72 -10.1 -3.01924 | opp_overlap 4461232, overlap 4461223 4461232 GATGGCCCCTTAACA CTGGCGGTCATTA ACGG TAATAACCGGCAG GAAATGCGCGGTGTT hslO 4460978 - 4461859 + | Hsp33-like chaperonin TERM 4637 4461873 - 4461900 + F 100 -13.4 -3.82097 | AATCCTCGTAATGCT TAGCCGGGTACC TATT GGTGCCCGGCCA TTTCCTCCGTTTCAC TERM 4638 4462532 - 4462546 + G 75 -11.4 -2.7242 | opp_overlap 4462530 4462529 4462527, overlap 4462529 4462529 ATCAGATGAAGAGCT GGCTCG GTT CGAGCC TGACTTTATCGTGAT pckA 4462056 - 4463675 + | phosphoenolpyruvate carboxykinase TERM 4639 4463710 - 4463733 + T 100 -6.7 -5.61913 | GTTTAGCGTTACAGG GGGGCAC TTTCAGAATT GTGCCCC TTTTTTCTATTTATT TERM 4640 4463929 - 4463915 - T 84 -11.4 -3.14564 | opp_overlap 4463912 TTATCTCTCCATCAA GCCACC GCT GGTGGC TTGGGCTTCACATCC envZ 4465263 - 4463911 - | osmolarity sensor protein TERM 4641 4464839 - 4464854 + g 77 -6.8 -4.57073 | opp_overlap 4464839, overlap 4464840 ACGCGCACCCAGATA TCTGGC GACA GCCAGG TTTTTAGCCAAACTA ompR 4465979 - 4465260 - | osmolarity response regulator greB 4466630 - 4466115 - | transcription elongation factor GreB TERM 4642 4467330 - 4467312 - g 76 -11.8 -2.85351 | GCGGGTTAGATGATA TCCAACTG CGT CAGTTGGA AAGCCGTCTGGGGTA TERM 4643 4467430 - 4467407 - g 75 -5.8 -4.49337 | overlap 4467411 GAAGATCAAGGAAAA CTCACCGACC AGCT GGCCGGGGCG ATCAACGCCACCCTA YpsIP31758_3982 4467164 - 4469539 + | hypothetical protein YpsIP31758_3983 4470067 - 4469921 - | hypothetical protein feoA 4470062 - 4470289 + | ferrous iron transport protein A TERM 4644 4470813 - 4470801 - g 80 -4.7 -5.11613 | opp_overlap 4470801 ACATTATCTAAAAAA CTGGG TTG CCCGG TCATTCCATTGGTAT feoB 4470381 - 4472696 + | ferrous iron transport protein B TERM 4645 4472678 - 4472692 + F 74 -10 -3.15579 | opp_overlap 4472663 4472677 TTGCTGCCGAAGTAG TGGCAG CAA CTGCCA TTGATCACCCATTAG YpsIP31758_3986 4472732 - 4472989 + | hypothetical protein TERM 4646 4472989 - 4473012 + T 76 -11 -2.50966 | opp_overlap 4472990, overlap 4472988 4472987 4472985 4473010 TCACGCACACCAATA AGAGATGCCC ATAT GGGCATCTCA ATATGTTGATTCCGT TERM 4647 4473011 - 4472990 - T 100 -14.5 -3.78034 | opp_overlap 4472989 4472988 4472987 4472985 4473010 CACGCACACCAATAA GAGATGCCC ATAT GGGCATCTC AATATGTTGATTCCG YpsIP31758_3987 4473396 - 4473127 - | hypothetical protein bioH 4474342 - 4473566 - | carboxylesterase bioH TERM 4648 4474958 - 4474920 - g 81 -13.1 -2.90763 | gap 1, overlap 4474925 GCTACAGCGTATACA CGCAACGCCGCCG-CAAC AGCA GCTGACGGCGGCACAGCG GCGAAAGAACGTGCG TERM 4649 4474953 - 4474925 - g 76 -11 -3.16177 | gap 1, overlap 4474920 AGCGTATACACGCAA CGCCGCCG-CAAC AGCA GCTGACGGCGGCA CAGCGGCGAAAGAAC YpsIP31758_3989 4474429 - 4475130 + | gluconate periplasmic binding protein YpsIP31758_3990 4475190 - 4475765 + | putative DNA uptake protein YpsIP31758_3991 4475777 - 4475974 + | hypothetical protein malQ 4478182 - 4476086 - | 4-alpha-glucanotransferase malP 4480600 - 4478195 - | maltodextrin phosphorylase TERM 4650 4483265 - 4483247 - g 72 -11 -2.55074 | TTGAAGGTGAAGCCA TGGCGCAA CAA CTGCGCCA ACTGATCCAACTCAA TERM 4651 4483362 - 4483372 + G 77 -4 -5.14163 | overlap 4483364 GCATAAGTTCGCGCA TTTC GAC GAAA TTTTTGTTGATAAAT malT 4480918 - 4483629 + | transcriptional regulator MalT glpE 4484003 - 4484332 + | thiosulfate sulfurtransferase TERM 4652 4484864 - 4484878 + G 70 -10 -3.13566 | opp_overlap 4484856, overlap 4484862 AAAAACGGCTTGGCA CCAGCA AAT TGCTGG TATTAACTATCGTCT YpsIP31758_3996 4484350 - 4485186 + | intramembrane serine protease GlpG TERM 4653 4485466 - 4485454 - g 75 -6.2 -4.63218 | overlap 4485455 GTGGTCGGAAGAAAA GGCG CGGAT CGCC CAACGCGTTGCTAGC glpR 4485221 - 4485979 + | DNA-binding transcriptional repressor GlpR TERM 4654 4486138 - 4486116 - T 71 -9 -3.30159 | overlap 4486099 4486098 CCAATGGGGCCATAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG TERM 4655 4487138 - 4487126 - T 72 -7.7 -3.87373 | CATATTGGTCATAAA TGGCT TGA AGCCA AACGGGTTTGTGCCC TERM 4656 4487174 - 4487196 + T 75 -3.4 -5.11836 | AACACGGTCACTACG CGAGAAAAAA AAT TTTATTCACG TTTTATTTTAACTAT YpsIP31758_3999 4487652 - 4487188 - | putative entero membrane protein TERM 4657 4489443 - 4489424 - g 73 -8.6 -3.90291 | gap 1 ATCCGCCTAATTAAA GGCAGCCAC ATT GTGG-TGCC CCGGGTTCATAACCA TERM 4658 4489896 - 4489881 - g 71 -6.8 -4.2558 | gap 1 CAGCGTGGACTAAAA CCGGTGC CTT GC-CCGG TGGGGATATCGGCGG TERM 4659 4490236 - 4490222 - g 71 -4.2 -4.70659 | opp_overlap 4490225 GCGCACACTGAAAAA CAACAG GCG CTGCCG CTGGTTTCTTAATAG glpD 4488734 - 4490248 + | glycerol-3-phosphate dehydrogenase TERM 4660 4490268 - 4490281 + T 70 -3.9 -4.84529 | opp_overlap 4490256, overlap 4490256 AAAGTTTAACATTGT TTAAC TTTC GTTAA TTTTTGCCTTTCTGG YpsIP31758_4001 4490400 - 4490278 - | hypothetical protein TERM 4661 4490337 - 4490365 + g 100 -9.6 -5.0538 | gap 1, opp_overlap 4490337 CAAGAAATTTAAAAA CCCTCTTCATCGG ATAA CCGC-GAAGAGGG TTTTTTACGGTGGCA TERM 4662 4490365 - 4490337 - G 100 -11.8 -4.86939 | gap 1, opp_overlap 4490337 CAAGAAATTTAAAAA CCCTCTTCATCGG ATAA CCG-CGAAGAGGG TTTTTTACGGTGGCA glgP 4492857 - 4490410 - | glycogen phosphorylase TERM 4663 4491087 - 4491077 - G 73 -8.2 -3.84406 | opp_overlap 4491077 TTGGCATTATAATAA GCCG AGG CGGC TTTACCGGCAAAAAT TERM 4664 4491445 - 4491464 + g 71 -5 -4.63218 | gap 1, overlap 4491448 TAACCCCAACCAGCG CCG-TGGTG TCA CACCATTGG TTTTATTGCAGAAGC TERM 4665 4491448 - 4491460 + g 70 -7.7 -3.82261 | overlap 4491445 CCCCAACCAGCGCCG TGGTG TCA CACCA TTGGTTTTATTGCAG glgA 4494457 - 4493027 - | glycogen synthase glgC 4495954 - 4494668 - | glucose-1-phosphate adenylyltransferase glgX 4497952 - 4495964 - | glycogen debranching enzyme TERM 4666 4496064 - 4496048 - G 79 -10.1 -3.63627 | GTCTGACACCCCAAA GGGAGGA ATC CCCTCCC ATTCCCCTTCAGGTA glgB 4500137 - 4497954 - | glycogen branching enzyme YpsIP31758_4007 4500644 - 4502341 + | sensor histidine kinase TERM 4667 4502412 - 4502449 + T 75 -8.6 -3.81146 | opp_overlap 4502414, overlap 4502414 AGAAAACCCTATAAA AAGTAATGCCAGAG TATAACCCAC CTCTGGCATTACTA TTATTCCTTACACAA TERM 4668 4502447 - 4502414 - T 100 -11.2 -4.90296 | opp_overlap 4502412 4502414 AAAACCCTATAAAAA GTAATGCCAGAG TATAACCCAC CTCTGGCATTAC TATTATTCCTTACAC TERM 4669 4502414 - 4502447 + T 83 -11.2 -3.49048 | opp_overlap 4502414, overlap 4502412 AAAACCCTATAAAAA GTAATGCCAGAG TATAACCCAC CTCTGGCATTAC TATTATTCCTTACAC YpsIP31758_4008 4517375 - 4502514 - | putative invasin TERM 4670 4508046 - 4508025 - G 70 -8 -3.90291 | ATTGGCTGAACTAAA GACCACCG CAGCAC CGGTGATC GCATTGCCGTTAGCA TERM 4671 4508334 - 4508313 - G 70 -8 -3.91911 | GTTAGCTGAACTAAA GACCACCG CAGCAC CGGTGATC GCATTGCCGTTAGCA TERM 4672 4513673 - 4513708 + g 70 -9.7 -3.14051 | overlap 4513670 4513677 TGTTGGTAATGCTAC CTATGGTGGCGACCA CATTGC TGGTCCCCGCCACAG TATTGGTCAGGGTCG TERM 4673 4514401 - 4514384 - G 71 -10.5 -2.78505 | overlap 4514381 4514379 CAGAACTGAAGACCA CGGCCGC ACCG GCGACCG GGTTGCCCTCGCTGT TERM 4674 4518346 - 4518305 - R 87 -5 -5.45726 | gap 2, opp_overlap 4518311 4518313, overlap 4518313 TATATTCTAAAAAAA TCCT-AAA-ATTATTTTTAA CATC TTAAAAATAATATTTTAGGA TTAATGCCCGAAAAT TERM 4675 4518336 - 4518313 - R 74 -7 -4.35095 | opp_overlap 4518313 4518311, overlap 4518305 AAAAAAATCCTAAAA TTATTTTTAA CATC TTAAAAATAA TATTTTAGGATTAAT TERM 4676 4518864 - 4518845 - R 100 -10 -5.63645 | opp_overlap 4518845 4518843 4518838 TTAAAATATAAAAAA CCCTGACC ATAA GATCAGGG TGCTTTGTTGTTCCT YpsIP31758_4010 4519641 - 4519354 - | hypothetical protein YpsIP31758_4011 4519956 - 4519648 - | hypothetical protein YpsIP31758_4012 4520791 - 4519967 - | hypothetical protein TERM 4677 4521044 - 4521024 - R 70 -2.7 -5.05782 | AGTTACTCTAAAAAA TTAATTTAC ATT ATAAATCAA TTTGTTAAATCCATT TERM 4678 4521166 - 4521149 - R 100 -9.8 -4.60949 | CATACGATAAACAAA GCCCGC ACTCTG GCGGGC TTACGGGTCTTCCAC asd 4522311 - 4521208 - | aspartate-semialdehyde dehydrogenase YpsIP31758_4014 4522327 - 4522464 + | hypothetical protein TERM 4679 4522686 - 4522702 + G 71 -2.9 -4.93968 | overlap 4522688 TGACTGAGATGATTG CGGCAAC TGT GTTGCTA TTTTTAATTATGGAT TERM 4680 4522688 - 4522700 + G 73 -7.7 -4.08682 | overlap 4522686 ACTGAGATGATTGCG GCAAC TGT GTTGC TATTTTTAATTATGG YpsIP31758_4015 4522679 - 4523263 + | putative eubacterial dITP- and XTP- hydrolyzing enzyme TERM 4681 4523348 - 4523334 - T 80 -2.8 -5.47399 | opp_overlap 4523334 TCAACGTCAAAAAAA CCAATT CAA AATGGG TCTTTGACTGCTGAC TERM 4682 4523425 - 4523438 + T 79 -8.1 -4.3534 | opp_overlap 4523419 TGTCAATAACCTCAA GCCTC TTCT GAGGC TTTTAATAATTAGAC YpsIP31758_4016 4523837 - 4523448 - | hypothetical protein YpsIP31758_4017 4524335 - 4523943 - | hypothetical protein YpsIP31758_4018 4524831 - 4524442 - | hypothetical protein YpsIP31758_4019 4526078 - 4524828 - | hypothetical protein gntK 4526921 - 4526418 - | thermoresistant gluconokinase gntT 4527138 - 4528454 + | high-affinity gluconate transporter GntT YpsIP31758_4022 4529511 - 4528516 - | LacI family sugar-binding transcriptional regulator TERM 4683 4529585 - 4529562 - R 82 -6 -4.93877 | gap 1, opp_overlap 4529562, overlap 4529557 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA TERM 4684 4529562 - 4529585 + r 100 -8.2 -4.87291 | gap 1, opp_overlap 4529562 4529557 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA YpsIP31758_4023 4530335 - 4529640 - | YhhW family protein TERM 4685 4530577 - 4530561 - H 100 -9.4 -6.40073 | AAGGCAAAAAAAAAA GCCAGC ACCCG GCTGGC TAAGTAAACACTGGA YpsIP31758_4024 4531100 - 4531837 + | DNA-binding response regulator YpsIP31758_4025 4532919 - 4531912 - | PfkB family kinase TERM 4686 4532444 - 4532427 - G 81 -12.7 -2.62933 | overlap 4532415 CAAGCTGCGACATCA GCGCCAG TAGT CTGGCGC TACGAGTACCGTACT YpsIP31758_4026 4533789 - 4532929 - | hypothetical protein YpsIP31758_4027 4534498 - 4533815 - | hypothetical protein rbsB6 4535517 - 4534573 - | ribose ABC transporter, periplasmic ribose-binding protein rbsC7 4536540 - 4535548 - | ribose ABC transporter, permease protein TERM 4687 4536498 - 4536473 - G 76 -9.9 -3.72695 | opp_overlap 4536492, overlap 4536484 ACGGTTTGCAGTAAA TCGCTAAAAAA CGCT TTTTTCAGCGA GGCAGATTTTGCCAC TERM 4688 4536497 - 4536484 - G 77 -3.8 -5.07107 | opp_overlap 4536492, overlap 4536473 TAAATCGCTAAAAAA CGCT TTTTTC AGCG AGGCAGATTTTGCCA rbsA6 4538056 - 4536533 - | ribose ABC transporter, ATP-binding protein YpsIP31758_4031 4538245 - 4540800 + | sensory box histidine kinase/response regulator YpsIP31758_4032 4542132 - 4540936 - | hypothetical protein TERM 4689 4541831 - 4541843 + g 75 -3.3 -5.14563 | opp_overlap 4541832, overlap 4541832 GAATCATCACAAAAA AGCTG CCC CAGCG TTTTTTCATGCCAGG TERM 4690 4541842 - 4541832 - G 91 -6.8 -5.33785 | opp_overlap 4541832 4541831 AATCATCACAAAAAA GCTG CCC CAGC GTTTTTTCATGCCAG pitA 4542443 - 4543939 + | low-affinity inorganic phosphate transporter TERM 4691 4544035 - 4544055 + T 100 -10.4 -5.43514 | opp_overlap 4544035 GATGAGCAATAAAAA GGCGGCCT AAATC AGGTCGCC TTTTTTAATTCTTTT TERM 4692 4544055 - 4544035 - T 100 -8.9 -5.15167 | opp_overlap 4544035 GATGAGCAATAAAAA GGCGGCCTA AAT CAGGTCGCC TTTTTTAATTCTTTT uspB 4544421 - 4544086 - | universal stress protein UspB YpsIP31758_4035 4545129 - 4545575 + | universal stress protein A TERM 4693 4545623 - 4545603 - f 78 -9.6 -3.6715 | opp_overlap 4545603 TTAGGTAACGCTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4694 4545603 - 4545623 + F 100 -11.8 -4.91109 | opp_overlap 4545603 TTAGGTAACGCTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4695 4545663 - 4545681 + F 76 -2.5 -5.252 | gap 1, overlap 4545667 CCCTCCTCGTTACCC TCAATCTG AATC CAGAT-GA TTTTTTGTCAAAATC TERM 4696 4546388 - 4546376 - g 73 -4.9 -4.77036 | TGGCATGATGAAAAA GTTAT CCA ATAAC ACCGCTTGTGTCTTT gdhA 4545822 - 4547165 + | glutamate dehydrogenase YpsIP31758_4037 4547415 - 4548743 + | metalloprotease TERM 4697 4548818 - 4548803 - T 70 -6 -4.37092 | overlap 4548804 ATTCGGGTGAGAAAA TGCCGC TAAC GCGGCG GCGTCACCGATGAAG TERM 4698 4548817 - 4548804 - T 72 -9.5 -3.21934 | overlap 4548803 TTCGGGTGAGAAAAT GCCGC TAAC GCGGC GGCGTCACCGATGAA YpsIP31758_4038 4549578 - 4548808 - | putative methyltransferase TERM 4699 4549525 - 4549542 + g 88 -14.1 -2.74012 | opp_overlap 4549525 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA TERM 4700 4549542 - 4549525 - G 95 -14.1 -3.7319 | opp_overlap 4549525 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA TERM 4701 4549596 - 4549612 + H 70 -3.7 -4.83759 | opp_overlap 4549595, overlap 4549597 ATTAGCCCTTAATAC CGTAATG GCG CATTACA TTTTTACCTTTGATT YpsIP31758_4039 4549600 - 4549776 + | hypothetical protein TERM 4702 4550194 - 4550205 + F 81 -4.4 -5.34381 | overlap 4550188 TTCATTTTTTCCCGG CGTA GGGA TACG TTTTTGTTTACCTTT TERM 4703 4550720 - 4550704 - f 79 -10.9 -3.10715 | opp_overlap 4550692, overlap 4550706 TTCACCACGATGTAA CATCAGC ATG GCTGATG AGACGTCTGGAATGG TERM 4704 4550948 - 4550974 + F 100 -15.4 -3.3941 | opp_overlap 4550948, overlap 4550934 ATTATATTCAGATAA CGTTATCCTTAA TAA TTAAGGATAACG TTCATTAGATATGCT TERM 4705 4550974 - 4550948 - f 100 -15.4 -3.5399 | opp_overlap 4550948 4550934 ATTATATTCAGATAA CGTTATCCTTAA TAA TTAAGGATAACG TTCATTAGATATGCT YpsIP31758_4041 4551615 - 4551791 + | hypothetical protein YpsIP31758_4042 4552370 - 4551894 - | putative entero membrane protein YpsIP31758_4043 4553220 - 4552372 - | hypothetical protein YpsIP31758_4044 4553798 - 4553463 - | IS3 family transposase orfB YpsIP31758_4046 4554655 - 4554086 - | hypothetical protein prlC 4557122 - 4555074 - | oligopeptidase A TERM 4706 4556877 - 4556889 + g 80 -4.1 -5.18357 | TTCATAAGCGGTACG TAGCT CAG GGCTA TTTTTTACTGAGTTC TERM 4707 4557972 - 4557962 - g 73 -5.4 -4.58773 | CGTATGAAATGAAAA CTGA TTA TCAG GATGTGGTGAAAGGT YpsIP31758_4048 4557451 - 4558293 + | hypothetical protein TERM 4708 4559181 - 4559171 - g 73 -4.6 -4.7254 | overlap 4559157 4559172 4559173 AGCGGTTATCAAAAA CGCC AAT GGCA GCCTGACGCTGCAAT TERM 4709 4559407 - 4559419 + G 82 -10.5 -3.86524 | overlap 4559418 CCCCGGTTGCCGTTG CGGCG GGC CGCCG TTTGTCCGAACGTCT gor 4558461 - 4559813 + | glutathione reductase TERM 4710 4559823 - 4559860 + F 95 -11.3 -3.89346 | gap 1, opp_overlap 4559814, overlap 4559825 AGATGATTTCGTTAC TATGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCATG TTTCTGAAATAAACA TERM 4711 4559825 - 4559858 + F 89 -11.7 -3.53733 | gap 1, opp_overlap 4559814, overlap 4559823 ATGATTTCGTTACTA TGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCA TGTTTCTGAAATAAA TERM 4712 4559953 - 4559989 + F 72 -9.5 -3.1552 | opp_overlap 4559938 4559958, overlap 4559938 4559933 4559958 4559985 GCCTAGCTTTTATCT TAATAGCCTGGCTTTTA TCT TAATAGCCTGGCTTTTA TCTTAATAGATAGAA TERM 4713 4559958 - 4559984 + F 100 -9.4 -4.70583 | opp_overlap 4559938 4559958, overlap 4559938 4559933 4559953 GCTTTTATCTTAATA GCCTGGCTTTTA TCT TAATAGCCTGGC TTTTATCTTAATAGA TERM 4714 4559984 - 4559958 - f 71 -9.4 -3.05844 | opp_overlap 4559938 4559933 4559958 4559953, overlap 4559938 GCTTTTATCTTAATA GCCTGGCTTTTA TCT TAATAGCCTGGC TTTTATCTTAATAGA TERM 4715 4560772 - 4560787 + G 72 -6 -4.36262 | opp_overlap 4560766, overlap 4560771 TGCGCAAATTGTATG CGCTGC TACA GCCGCG TTTTAGTCTGAATAT YpsIP31758_4050 4560084 - 4561211 + | putative carbohydrate diacid regulator YpsIP31758_4051 4561389 - 4562657 + | gluconate:H+ symporter (GntP) family protein TERM 4716 4563339 - 4563319 - g 73 -9.7 -3.32844 | opp_overlap 4563337 GGGGCGACGCCAGAA CGCGTGCAA CAA TTGGACGCG GCGTTGCAGCATTAT YpsIP31758_4052 4562668 - 4563804 + | glycerate kinase TERM 4717 4563940 - 4563909 - T 70 -7.2 -3.74872 | opp_overlap 4563907 4563936, overlap 4563911 AGGGACTTTATCAAA TACCGACGGTCAGA TATC TCTGGCCGTTGGGA CATCCTATTTTCCAC TERM 4718 4563938 - 4563911 - T 78 -9.8 -3.4582 | opp_overlap 4563907 4563936, overlap 4563909 GGACTTTATCAAATA CCGACGGTCAGA TATC TCTGGCCGTTGG GACATCCTATTTTCC YpsIP31758_4053 4564547 - 4564050 - | hypothetical protein YpsIP31758_4054 4565418 - 4564549 - | hypothetical protein TERM 4719 4565493 - 4565469 - R 100 -12.1 -3.80625 | CCGTCATAACGCAAA GCGGCATCCAG TAA CAAGATGCCGC CCCAAATCATTATCA YpsIP31758_4055 4568709 - 4565506 - | putative autotransporter protein TERM 4720 4566195 - 4566205 + g 77 -6.8 -4.63527 | opp_overlap 4566179, overlap 4566179 4566178 CGCCAGTCACTTGCG TGCC TGC GGCA TTTTTGGCCTGATAG TERM 4721 4568772 - 4568753 - H 78 -2.2 -5.4593 | opp_overlap 4568744 4568753, overlap 4568744 TTAAAACAATAAAAA TAACAAAA CTTT TATTGTTA TTTTTTATATTTCTT TERM 4722 4568753 - 4568772 + H 82 -2.2 -5.61913 | opp_overlap 4568744 4568753, overlap 4568744 TTAAAACAATAAAAA TAACAAAA CTTT TATTGTTA TTTTTTATATTTCTT TERM 4723 4569423 - 4569407 - g 82 -5.1 -5.08011 | AAAACCGGCAAAAAA GCCATCT CTC ATATGGC CCGCCTCAGTGATCG TERM 4724 4569697 - 4569682 - g 75 -5.4 -4.7173 | overlap 4569684 CACCACACTTAAAAA TACGGT GAAT ACCGCA ATCCAGCAACGCACC TERM 4725 4570099 - 4570088 - g 81 -3.6 -5.4756 | AAGCCGAAGAAAAAA GCGC TGTT ACGC GGAGCCCTCATTGCC YpsIP31758_4056 4569317 - 4570402 + | ribonuclease BN-like family protein TERM 4726 4571082 - 4571094 + G 79 -3.3 -5.1861 | opp_overlap 4571053 TGGCAATAACCGCAC TGCCC CCT GGGGA TTTTTTACTGCTGGC TERM 4727 4571140 - 4571117 - g 70 -8.1 -3.85698 | CTGCTGGCCGACAAA GCGAACCTG ATGACG CAGGATCGC GCCTCAGCAGAGGAA YpsIP31758_4057 4570406 - 4571203 + | CDP-diacylglycerol pyrophosphatase YpsIP31758_4058 4573445 - 4571208 - | AsmA family protein TERM 4728 4573739 - 4573724 - R 80 -9 -3.98159 | CAGGAGAAGATGAAA GGCGAT CATT ATCGCC TTAGGGAGCGTTAGC YpsIP31758_4059 4574577 - 4573750 - | EAL domain-containing protein TERM 4729 4574864 - 4574852 - g 80 -2.6 -5.47159 | GCGGAACAGAAAAAA CAGC TTATC GCCG GTGTCACCCAGCTAC dmpI 4574795 - 4574995 + | 4-oxalocrotonate tautomerase TERM 4730 4575068 - 4575050 - g 79 -3.2 -5.34555 | opp_overlap 4575051, overlap 4575043 4575051 TTACATCATAAAAAA TTTAAAAC ACC GTTTTAAT CCTATTGACTCTGGA YpsIP31758_4061 4575003 - 4575110 + | hypothetical protein kdgK 4575274 - 4576218 + | 2-dehydro-3-deoxygluconokinase TERM 4731 4576305 - 4576250 - T 86 -11.3 -3.38991 | gap 1, opp_overlap 4576258 4576304, overlap 4576248 AGGCCGCGAATAACA GACGTTAA-TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCATTTTACGCC TGGCTAACGTGGCCT TERM 4732 4576258 - 4576296 + T 100 -12.5 -4.11692 | opp_overlap 4576250 4576248 AATAACAGACGTTAA TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCA TTTTACGCCTGGCTA YpsIP31758_4063 4577881 - 4576382 - | M16 family peptidase TERM 4733 4576720 - 4576742 + g 88 -7 -5.05601 | TACGCGCATAGGTGG CGAACAACTT ACT GAGTTGGTCG TTTTTCTGTGTCATC TERM 4734 4577356 - 4577325 - G 76 -8.6 -4.00042 | opp_overlap 4577328, overlap 4577328 TGGCCGATTAAAGAA GAACCTTTGAGGCG ATAA CGCCACCACGGTTC CTGAATATTTTGTGG TERM 4735 4577658 - 4577646 - G 74 -9.1 -3.77464 | opp_overlap 4577645 4577639 4577637 AGACGAGGCAGTAAA TGGGC AAA GCCCA CTTCCTGTGTATTTT TERM 4736 4578203 - 4578173 - R 100 -17.7 -2.9294 | overlap 4578191 GACATTATGCAGAGA CGCTACCAGTGAC AGCAA GCCACTGGTAGCG AATTGAAGGGAGAAA dctA 4579535 - 4578246 - | C4-dicarboxylate transporter DctA YpsIP31758_4065 4580486 - 4580007 - | F5/8 type C domain-containing protein YpsIP31758_4066 4582329 - 4580611 - | periplasmic pectate lyase YpsIP31758_4067 4582367 - 4582489 + | hypothetical protein TERM 4737 4582526 - 4582503 - T 72 -9.5 -3.14344 | opp_overlap 4582503 4582521 GACTCGGCCCATCAA GGGGCCTCG CCTCTT CGAGGCCGC AGCAAGCAGCCTTCC kdgM1 4583279 - 4582575 - | oligogalacturonate-specific porin protein KdgM YpsIP31758_4069 4585935 - 4583920 - | putative phosphodiesterase bcsZ 4587366 - 4586251 - | endo-1,4-D-glucanase dppF 4588560 - 4587484 - | dipeptide transporter ATP-binding subunit dppD 4589537 - 4588557 - | dipeptide transporter ATP-binding subunit dppC 4590453 - 4589551 - | dipeptide transporter dppB 4591483 - 4590464 - | dipeptide transporter permease DppB TERM 4738 4591507 - 4591532 + r 75 -8.9 -3.64487 | opp_overlap 4591506 4591507 CTCTCTGTGTAGAAT GCCGGGCTGCT CATA GGCAACCTGGC TTATTAAACCTCTCC TERM 4739 4591751 - 4591718 - R 73 -5.9 -4.50159 | overlap 4591720 TTTAACCTAAATAAA TAGACCGATGAACGT TGAT ACGCACACCGGTCCG GTATAAGGGTAAAAT TERM 4740 4591749 - 4591720 - R 88 -10.7 -3.8535 | overlap 4591718 TAACCTAAATAAATA GACCGATGAACGT TGAT ACGCACACCGGTC CGGTATAAGGGTAAA dppA 4593373 - 4591766 - | dipeptide ABC transporter, periplasmic dipeptide-binding protein YpsIP31758_4076 4595712 - 4594042 - | ShlB/FhaC/HecB family haemolysin secretion/activation protein TERM 4741 4595878 - 4595856 - R 77 -6.3 -4.66987 | opp_overlap 4595875 GACACGTCAATAAAA GTCAGCCAC GAAAA GTGACTAAC TTTTTAAAAGATAAT YpsIP31758_4077 4597304 - 4595913 - | putative hemagglutinin/hemolysin TERM 4742 4597587 - 4597606 + r 100 -13.6 -3.78904 | opp_overlap 4597587 AATGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4743 4597606 - 4597587 - R 100 -13.6 -5.63504 | opp_overlap 4597587 AATGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC uhpC 4599141 - 4597810 - | regulatory protein UhpC TERM 4744 4598013 - 4597993 - G 71 -6.7 -4.21351 | opp_overlap 4597996, overlap 4597976 AAACAGCCCAACAAA GCCGGTTGC AGC GCCAGCGGC ATCCTTATGAGAGCA uhpB 4600765 - 4599236 - | sensory histidine kinase UhpB TERM 4745 4600349 - 4600334 - G 71 -8.2 -3.69338 | opp_overlap 4600338, overlap 4600325 4600337 AACCAACCCTAATAA GAGCGC CATT GCGCCC TGCCCACTGGCTATC uhpA 4601352 - 4600762 - | transcriptional regulatory protein UhpA TERM 4746 4601461 - 4601433 - R 74 -4.6 -4.81551 | gap 1, overlap 4601434 4601435 GAGGCACATCAAAAA TTGGGCCAGACTT AGGT AAGCCTGGCC-AG TTACGGCTAAATTGC TERM 4747 4601460 - 4601435 - R 71 -9.7 -2.68202 | overlap 4601434 4601433 GGCACATCAAAAATT GGGCCAGACTT AGGT AAGCCTGGCCA GTTACGGCTAAATTG eptB 4603159 - 4601468 - | phosphoethanolamine transferase TERM 4748 4603580 - 4603555 - R 100 -10.3 -4.46656 | overlap 4603556 4603557 GGCAGAAGAGTAAAA TGCCCGCGCCA GAGA TGGCGCGGGTC GAGCTCCCAAGGAAG TERM 4749 4603579 - 4603556 - R 100 -13.8 -3.27271 | overlap 4603555 4603557 GCAGAAGAGTAAAAT GCCCGCGCCA GAGA TGGCGCGGGT CGAGCTCCCAAGGAA TERM 4750 4603578 - 4603557 - R 100 -17.3 -2.5564 | overlap 4603556 4603555 CAGAAGAGTAAAATG CCCGCGCCA GAGA TGGCGCGGG TCGAGCTCCCAAGGA TERM 4751 4603661 - 4603672 + r 82 -5.8 -5.00616 | overlap 4603657 GTCGCGAGCACGTTG CCAG CAGC CTGG TTTTTTGCAGGCAAA YpsIP31758_4082 4605151 - 4603688 - | hypothetical protein TERM 4752 4604941 - 4604958 + g 73 -2.1 -5.00895 | gap 1, overlap 4604941 4604942 TAATTCGGACTTCAT C-GAAAAT ATT ATTTTCAG TTTTTATGTAATCCG TERM 4753 4605070 - 4605090 + g 74 -9.1 -3.72324 | opp_overlap 4605069 GTGTATCGTAGATAC GTATTGCCA GTA TGGTAATAC TTATTACTACCAATA YpsIP31758_4083 4605363 - 4605563 + | hypothetical protein TERM 4754 4605607 - 4605570 - T 82 -4.9 -5.41143 | gap 1, overlap 4605574 4605575 CATGCTTGAAAAAAA TAAATCGGGCCGCTGATA CCC CATCAACCGCCCG-TTAA CATTTGTTCCCTTAC TERM 4755 4605604 - 4605574 - T 100 -8.2 -5.20328 | overlap 4605570 4605575 CTTGAAAAAAATAAA TCGGGCCGCTGATA CCC CATCAACCGCCCGT TAACATTTGTTCCCT TERM 4756 4605603 - 4605575 - T 90 -11.7 -3.7057 | overlap 4605574 4605570 TTGAAAAAAATAAAT CGGGCCGCTGATA CCC CATCAACCGCCCG TTAACATTTGTTCCC YpsIP31758_4084 4607022 - 4605619 - | amino acid permease family protein hutH 4608886 - 4607354 - | histidine ammonia-lyase hutU 4610574 - 4608883 - | urocanate hydratase TERM 4757 4609886 - 4609869 - G 71 -6.9 -4.20769 | opp_overlap 4609867 4609869 ACAGTGCAATAGAAA CCGCGAC ACCT GTAGCGG TATATTTCTCGATGC YpsIP31758_4087 4611301 - 4612245 + | pyridoxal-phosphate dependent protein TERM 4758 4612776 - 4612759 - g 73 -7.1 -4.20696 | opp_overlap 4612761 GCATTAACGTTAAAA CACTAAT GAAA ATTAGTG TTAAACCTCATGGGG YpsIP31758_4088 4612242 - 4612808 + | adenine phosphoribosyltransferase TERM 4759 4613806 - 4613789 - g 71 -2.7 -4.99043 | overlap 4613792 TCGGCATAAACAAAA TTATTGG GAAC CCAAAAA CAAAAGGGGCATAAC YpsIP31758_4089 4612891 - 4613820 + | hypothetical protein TERM 4760 4614323 - 4614333 + G 87 -6.8 -5.17054 | opp_overlap 4614313 CAAGATAAGCAGAGT GCGT ATC ACGC TTTTTTGGCTATTCT TERM 4761 4614618 - 4614607 - g 78 -5.8 -4.72272 | opp_overlap 4614611, overlap 4614608 TCTGGGGATCAAAAA TGGC CCTA GCCA TGCGGAGGTGATGAT YpsIP31758_4090 4613822 - 4615066 + | hypothetical protein YpsIP31758_4091 4615589 - 4616542 + | iron chelate ABC transporter, periplasmic iron-binding protein YpsIP31758_4092 4616552 - 4617511 + | iron chelate ABC transporter, permease protein TERM 4762 4617595 - 4617615 + G 83 -9.7 -4.25256 | overlap 4617592 TATTGCTACTGAGCA TCATCGCTC TCG GTGCGATGA TTATTTTCATGACAA YpsIP31758_4093 4617501 - 4618508 + | iron chelate ABC transporter, permease protein YpsIP31758_4095 4618505 - 4619263 + | iron chelate ABC transporter, ATP-binding protein YpsIP31758_4094 4620030 - 4619260 - | hypothetical protein YpsIP31758_4096 4620455 - 4620075 - | hypothetical protein TERM 4763 4620654 - 4620639 - R 75 -9 -3.61764 | opp_overlap 4620639 TTATTAATCTTTAAA GGCATC GCAC GATGCC TTTTTACATTTAGGG TERM 4764 4620639 - 4620654 + r 100 -9 -4.81249 | opp_overlap 4620639 TTATTAATCTTTAAA GGCATC GCAC GATGCC TTTTTACATTTAGGG YpsIP31758_4097 4620962 - 4620690 - | phage integrase family site specific recombinase xylR 4622541 - 4621348 - | xylose operon regulatory protein TERM 4765 4622612 - 4622593 - R 82 -5.7 -4.91459 | opp_overlap 4622593 GAACAGGCAGAAAAA TCAGCGC GGTATG GCACTGA TTTTCCTATGGGATA YpsIP31758_4099 4623815 - 4622631 - | putative xylose transport system permease protein XylH TERM 4766 4623528 - 4623515 - G 74 -3.8 -4.84527 | overlap 4623516 GCCAGACATCAAAAA TGGC CGCTAT GCCA CCCAATAACCCCATC xylG 4625334 - 4623802 - | xylose transporter ATP-binding subunit TERM 4767 4625023 - 4625006 - G 79 -10.5 -3.727 | overlap 4624995 4625000 TCCATGATACCGAAA CGGCCCC ATTC GGAGCCG AGGAACATGTTCTCC xylF 4626537 - 4625542 - | D-xylose transporter subunit XylF TERM 4768 4626983 - 4626973 - H 74 -6.8 -4.2717 | opp_overlap 4626961 ACCAGCCCAGCAAAA GCAG GGC CTGC TTCCAAGGAGTATTG TERM 4769 4627677 - 4627667 - g 70 -2.4 -4.88684 | opp_overlap 4627668 4627670, overlap 4627668 AACATAAACACAAAA CGGG TTT CCAG GGGACACTCCTTATT xylA 4627000 - 4628319 + | xylose isomerase TERM 4770 4628710 - 4628744 + G 75 -5.7 -4.59773 | gap 1, opp_overlap 4628698 4628706 AAACAACATCAGGTG CTGCGCCCCGCCATTT TATG GAATGACGGC-CGCAG TTTTTCCCAGTGCCA TERM 4771 4629426 - 4629401 - g 83 -4.6 -5.28176 | opp_overlap 4629401 CTGAGGTAGAAAAAA CCCCAATGGC TGCAAC GCCAGTGTGG TTCCTACCCTATCTT xylB 4628443 - 4629897 + | xylulokinase TERM 4772 4629921 - 4629951 + T 100 -9.1 -4.82901 | opp_overlap 4629921 4629920 4629918, overlap 4629922 AGTGCGAATAAACAC CGTGCTGGGTAAT TCATT ATTACTCAGCACA TTTTTATAGGGCCAC TERM 4773 4629922 - 4629950 + T 100 -12.6 -3.49419 | opp_overlap 4629921 4629920 4629918, overlap 4629921 GTGCGAATAAACACC GTGCTGGGTAAT TCATT ATTACTCAGCAC ATTTTTATAGGGCCA YpsIP31758_4104 4630963 - 4629977 - | hypothetical protein YpsIP31758_4105 4631751 - 4631002 - | pili assembly chaperone protein YpsIP31758_4106 4634354 - 4631862 - | fimbrial usher protein TERM 4774 4632414 - 4632426 + g 77 -6.3 -4.5448 | CCAGTTGGTATTGAT TGAGT TGT ACTCA TTATTTTTATGACTG TERM 4775 4634312 - 4634326 + g 95 -2.1 -6.34616 | TTGTTAATACTTTCA CCATT AGGAA GATGG TTTTTTTTCTTTTAG TERM 4776 4634384 - 4634417 + r 93 -11.9 -3.66497 | opp_overlap 4634385 4634388, overlap 4634376 4634385 4634388 4634393 CTTATGGCGATAATA TTAATTAGAGGGGAG TTAC CTCCCCTTTAATTAC TTTAAACATTTGTTA TERM 4777 4634416 - 4634385 - R 90 -13.2 -2.53271 | opp_overlap 4634384 4634376 4634385 4634388 4634393, overlap 4634388 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 4778 4634385 - 4634416 + r 100 -15.4 -2.79175 | opp_overlap 4634385 4634388, overlap 4634384 4634376 4634388 4634393 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 4779 4634413 - 4634388 - R 80 -10.5 -3.41745 | opp_overlap 4634385 4634384 4634376 4634388 4634393, overlap 4634385 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 4780 4634388 - 4634413 + r 100 -12.7 -3.5332 | opp_overlap 4634388 4634385, overlap 4634385 4634384 4634376 4634393 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 4781 4634393 - 4634408 + r 89 -10.4 -4.04394 | opp_overlap 4634388 4634385, overlap 4634388 4634385 4634384 4634376 ATAATATTAATTAGA GGGGAG TTAC CTCCCC TTTAATTACTTTAAA YpsIP31758_4107 4634987 - 4634430 - | fimbrial protein YpsIP31758_4109 4635742 - 4635858 + | hypothetical protein YpsIP31758_4108 4636847 - 4635855 - | putative acyltransferase TERM 4782 4636426 - 4636436 + g 71 -8.2 -3.67976 | ATTGCCAGATAGCGG CCCG AAA CGGG TTTAACCTTAATAAG TERM 4783 4637193 - 4637171 - H 71 -9 -3.30159 | overlap 4637154 4637153 CCAATGGGGCCATAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG mdfA 4637831 - 4639060 + | multidrug translocase MdfA TERM 4784 4639065 - 4639108 + F 100 -11.7 -4.38154 | opp_overlap 4639062, overlap 4639066 4639068 4639069 CTACCGAGTAAGTTT ATTCCCTGCTGGAGGAGCG TCAGGT CGCTTCTCCAGCAGGATAG TTTTATCCACGCTAT TERM 4785 4639066 - 4639107 + F 100 -15.2 -3.2241 | opp_overlap 4639062, overlap 4639065 4639068 4639069 TACCGAGTAAGTTTA TTCCCTGCTGGAGGAGCG TCAGGT CGCTTCTCCAGCAGGATA GTTTTATCCACGCTA TERM 4786 4639068 - 4639105 + F 100 -17.8 -3.1733 | opp_overlap 4639062, overlap 4639066 4639065 4639069 CCGAGTAAGTTTATT CCCTGCTGGAGGAGCG TCAGGT CGCTTCTCCAGCAGGA TAGTTTTATCCACGC TERM 4787 4639069 - 4639104 + F 100 -21.3 -2.50077 | opp_overlap 4639062, overlap 4639068 4639066 4639065 CGAGTAAGTTTATTC CCTGCTGGAGGAGCG TCAGGT CGCTTCTCCAGCAGG ATAGTTTTATCCACG YpsIP31758_4111 4639533 - 4640351 + | hypothetical protein TERM 4788 4640380 - 4640353 - T 78 -9.2 -3.62235 | opp_overlap 4640359, overlap 4640351 4640356 ATGAAAGAAAATAGA CAGCAAGGAGGA TCAT TCCTCCTTATTG GAAAGATATCTATAT TERM 4789 4640359 - 4640374 + T 75 -9 -3.62224 | opp_overlap 4640356 4640353 4640351 GAAAATAGACAGCAA GGAGGA TCAT TCCTCC TTATTGGAAAGATAT YpsIP31758_4112 4640697 - 4640365 - | hypothetical protein TERM 4790 4641175 - 4641187 + r 87 -6.3 -5.18726 | GTTGTACCGGGCACC TTGAG GGA CTCAA TTTTTGTTCTGGAGG selB 4643430 - 4641457 - | selenocysteinyl-tRNA-specific translation factor selA 4644815 - 4643427 - | selenocysteine synthase fdhE 4645940 - 4645011 - | formate dehydrogenase accessory protein FdhE TERM 4791 4645886 - 4645859 - G 73 -7.6 -4.12942 | opp_overlap 4645851 4645860 4645863, overlap 4645863 TTAAATTTGCGAAAA GTAACGGCGGGA TATT CCCCGCCGTTGT ACCTTTTTCGCGTTG TERM 4792 4645860 - 4645885 + g 81 -12.6 -2.85019 | opp_overlap 4645859 4645863, overlap 4645851 4645863 TAAATTTGCGAAAAG TAACGGCGGG ATATTC CCCGCCGTTG TACCTTTTTCGCGTT TERM 4793 4645863 - 4645882 + g 86 -12.1 -3.5616 | opp_overlap 4645859 4645863, overlap 4645860 4645851 ATTTGCGAAAAGTAA CGGCGGG ATATTC CCCGCCG TTGTACCTTTTTCGC TERM 4794 4645882 - 4645863 - G 90 -12.8 -3.67175 | opp_overlap 4645863 4645860 4645851, overlap 4645859 ATTTGCGAAAAGTAA CGGCGGGA TATT CCCCGCCG TTGTACCTTTTTCGC fdoI 4646614 - 4645940 - | formate dehydrogenase-O subunit gamma TERM 4795 4646459 - 4646414 - G 73 -4.7 -4.81734 | gap 2, overlap 4646415 4646425 4646428 AAACATGATCAAAAA GGCCGCGAACATCACCACCCC GGCAAA GGGGTGAAGA-ATGCGCG-CC ATCTGTGGTGTACCA TERM 4796 4646570 - 4646599 + g 100 -7 -5.77571 | overlap 4646571 TATCCAGTGGTTAAT GCGCTCCGGCGC GCTGTA GCGCTGGATCGG TTTTTCTTTTTTCAT TERM 4797 4646571 - 4646598 + g 85 -10.5 -4.02882 | overlap 4646570 ATCCAGTGGTTAATG CGCTCCGGCGC GCTGTA GCGCTGGATCG GTTTTTCTTTTTTCA YpsIP31758_4118 4647582 - 4646611 - | putative aerobic formate dehydrogenase, iron-sulfur subunit TERM 4798 4646926 - 4646947 + g 82 -11.6 -3.28712 | opp_overlap 4646941, overlap 4646941 4646941 GGTACCGCCGACGCC CGCAGGGT CATATA ACCCTGCG TTATCAAACCCACGG TERM 4799 4647362 - 4647408 + g 76 -10.9 -3.15249 | opp_overlap 4647371 4647372, overlap 4647372 ACTGTCCACGACTTA G-CGGTCAAATCGGCGGGGTTGT CAT ACA-CCCCGACGTTATGACCGAC TTCATCGCGGATATC TERM 4800 4647372 - 4647397 + g 73 -9.7 -3.30159 | gap 1, opp_overlap 4647372 4647371, overlap 4647362 ACTTAGCGGTCAAAT CGGCGGGGTTGT CAT ACA-CCCCGACG TTATGACCGACTTCA fdoG 4650642 - 4647595 - | aerobic formate dehydrogenase subunit alpha TERM 4801 4648920 - 4648938 + g 71 -3 -4.96501 | overlap 4648921 4648922 4648924 CCAAGAATTTCAGCT TCGACAGC GCT GCTGTCAC TTTGTTTTTATCCGG TERM 4802 4651350 - 4651313 - g 80 -9.1 -4.18018 | opp_overlap 4651347 4651348, overlap 4651315 CTTGCCCAGCTAAAA CAGGTACAACCGGTCGG TCAA CTCACCGGCTGTACCCA TGCTGCCGCGTGGAT TERM 4803 4651348 - 4651315 - g 85 -11.7 -3.69216 | opp_overlap 4651347, overlap 4651313 TGCCCAGCTAAAACA GGTACAACCGGTCGG TCAA CTCACCGGCTGTACC CATGCTGCCGCGTGG YpsIP31758_4120 4650839 - 4651663 + | formate dehydrogenase accessory protein TERM 4804 4651721 - 4651699 - f 78 -4.2 -5.22312 | ATCCACACCAAAAAA TATCATTGAT GAC ACCAAAGATA TAACGATAGTGGCGA TERM 4805 4651919 - 4651900 - f 71 -4.9 -4.7416 | overlap 4651903 GTAAAACGTCAAAAA GAAGCGG GTTACG CCGCATC ATAAATTAATTTTAT TERM 4806 4651916 - 4651903 - f 70 -5.2 -4.45259 | overlap 4651900 AAACGTCAAAAAGAA GCGG GTTACG CCGC ATCATAAATTAATTT TERM 4807 4652537 - 4652515 - g 71 -8.4 -3.64184 | opp_overlap 4652508, overlap 4652508 4652516 AAAGACGACGGCAAA CTGGCGGTTG TTT CAACCGCTAA CCAAGACAGCCCGCT sodA 4652098 - 4652721 + | superoxide dismutase TERM 4808 4652756 - 4652739 - f 70 -5.5 -4.42386 | opp_overlap 4652739 CGCTTATCCATAAAA CGGGC CTTAAACC GCCCG TTGCATAGCCAAAGA TERM 4809 4652839 - 4652807 - f 76 -9.2 -3.50722 | opp_overlap 4652811, overlap 4652805 4652809 4652811 TTCAAGTACGAAAGA TACATGCCAGCAAG GCCCT CTTGCTGGCATTTT TATTGTTAAAGTTTC TERM 4810 4652837 - 4652809 - f 89 -11.8 -3.32233 | opp_overlap 4652811, overlap 4652807 4652805 4652811 CAAGTACGAAAGATA CATGCCAGCAAG GCCCT CTTGCTGGCATT TTTATTGTTAAAGTT TERM 4811 4652811 - 4652835 + F 100 -15.1 -5.29445 | opp_overlap 4652811 4652809 4652807 4652805 AGTACGAAAGATACA TGCCAGCAAGG CCC TCTTGCTGGCA TTTTTATTGTTAAAG TERM 4812 4652835 - 4652811 - f 100 -14.4 -3.21671 | opp_overlap 4652811, overlap 4652809 4652807 4652805 AGTACGAAAGATACA TGCCAGCAAG GCCCT CTTGCTGGCA TTTTTATTGTTAAAG YpsIP31758_4122 4653065 - 4655014 + | methyl-accepting chemotaxis protein TERM 4813 4655441 - 4655431 - g 100 -5.4 -6.15717 | GAAATAGAAAAAAAA GTGA ATG TCAC GTGTAGCAAAGCACG TERM 4814 4655483 - 4655473 - g 74 -2.6 -5.06816 | AGTTTGCAAGAAAAA TTAA GCG TTAA ATACAAAAAAAGACA YpsIP31758_4123 4655152 - 4655535 + | hypothetical protein YpsIP31758_4124 4656067 - 4656543 + | hypothetical protein TERM 4815 4656693 - 4656666 - T 80 -10.5 -3.56375 | overlap 4656664 4656661 4656657 4656668 GCAAAAGGAACAACA CACCGGGTGGC GGCCAT GCCACCCAGAG GTTACCGCAAAGCGG TERM 4816 4656691 - 4656668 - T 86 -11.7 -3.33839 | overlap 4656666 4656664 4656661 4656657 AAAAGGAACAACACA CCGGGTGGC GGCCAT GCCACCCAG AGGTTACCGCAAAGC TERM 4817 4656708 - 4656720 + T 71 -3.3 -5.0538 | opp_overlap 4656718 GGTTACCGCAAAGCG GCGAT CAA AACGC TTTTTTAGCGTAGCC YpsIP31758_4125 4657068 - 4656712 - | hypothetical protein TERM 4818 4656887 - 4656898 + g 73 -2.2 -5.03715 | GCCAGTTTTTGAGCT TCTG CACT CAGG TTTTTTACCCGTACT TERM 4819 4656919 - 4656942 + g 83 -7.4 -4.66456 | gap 1, overlap 4656917 4656921 TACCCGTACTTCTTT CAGGC-GCTGA ATT TCAGCGGCCAG TTTCTCTTTTTCTTT mtlR 4657871 - 4657317 - | mannitol repressor protein TERM 4820 4658052 - 4658015 - R 73 -9.1 -3.54424 | overlap 4658016 4658018 CTTTAGTGTCTTAAA TCATTGGCCCGCTATCG TTTC CGTTATCAGGCCAATGG GACATAACTGGCTTA TERM 4821 4658051 - 4658016 - R 88 -12.6 -2.72511 | overlap 4658015 4658018 TTTAGTGTCTTAAAT CATTGGCCCGCTATCG TTTC CGTTATCAGGCCAATG GGACATAACTGGCTT TERM 4822 4658049 - 4658018 - R 71 -9.4 -2.90813 | overlap 4658016 4658015 TAGTGTCTTAAATCA TTGGCCCGCTATCG TTTC CGTTATCAGGCCAA TGGGACATAACTGGC mtlD 4659241 - 4658078 - | mannitol-1-phosphate 5-dehydrogenase mtlA 4661309 - 4659378 - | PTS system, mannitol-specific EIICBA component TERM 4823 4661346 - 4661314 - R 71 -4.2 -4.89567 | GGTGAAAACATAAAA CACCCCTATTGGTA CGCGC TAACAATAAGAGCG CGATATAATTATTTT TERM 4824 4661479 - 4661467 - R 72 -6.3 -4.26903 | CGTAGCTCACGAAAA TTTCG TGA CGAAA GTCACACAAAACAAC TERM 4825 4661646 - 4661631 - R 74 -7.6 -4.07568 | opp_overlap 4661631 4661630 4661626 TGTTTGTTTTTAAAA TGTGAC ATTT GTCACA AGTTATTTTTGCTCG TERM 4826 4661758 - 4661739 - R 73 -5.6 -4.44914 | overlap 4661741 TATGTAAGAAAATAA CAGGGACC AAAA GGCCCCTT CGCAATACGCAAATT TERM 4827 4661756 - 4661741 - R 75 -8.2 -3.8165 | overlap 4661739 TGTAAGAAAATAACA GGGACC AAAA GGCCCC TTCGCAATACGCAAA YpsIP31758_4129 4662510 - 4661791 - | putative lipoprotein TERM 4828 4662774 - 4662735 - R 78 -7.3 -4.42788 | gap 1, opp_overlap 4662739 4662740, overlap 4662737 4662740 4662745 GCTAACCCCACAAAA CATAACGT-AAGGGGAGC GTATA GCTCCCCTTGAGGTTATT GACAAAGTGCCCGCG TERM 4829 4662772 - 4662737 - R 84 -9.9 -3.81948 | gap 1, opp_overlap 4662739 4662740, overlap 4662735 4662740 4662745 TAACCCCACAAAACA TAACGT-AAGGGGAGC GTATA GCTCCCCTTGAGGTTA TTGACAAAGTGCCCG TERM 4830 4662768 - 4662740 - R 80 -8.8 -4.02581 | opp_overlap 4662739 4662740, overlap 4662737 4662735 4662745 CCCCACAAAACATAA CGTAAGGGGAGC GTATA GCTCCCCTTGAG GTTATTGACAAAGTG TERM 4831 4662740 - 4662768 + r 77 -11 -2.77013 | opp_overlap 4662740 4662737 4662735 4662745, overlap 4662739 CCCCACAAAACATAA CGTAAGGGGAGC GTATA GCTCCCCTTGAG GTTATTGACAAAGTG TERM 4832 4662763 - 4662745 - R 86 -11.7 -3.32941 | opp_overlap 4662740 4662739, overlap 4662740 4662737 4662735 CAAAACATAACGTAA GGGGAGC GTATA GCTCCCC TTGAGGTTATTGACA TERM 4833 4662842 - 4662868 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4662831, overlap 4662837 4662843 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4834 4662843 - 4662869 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4662831, overlap 4662837 4662842 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4835 4662933 - 4662951 + r 90 -11.7 -3.61398 | TGTCAGCAGTCTGAA GGGGAGC GTATA GCTCCCC TTATTGCCCAGCACG glyS 4665051 - 4662982 - | glycyl-tRNA synthetase subunit beta TERM 4836 4663414 - 4663376 - G 75 -7.6 -4.25283 | gap 2, opp_overlap 4663375 ACTCGCGCATCAAAA TCAGCCGGT-TTGG-TCG GACGA CGAGCCAATACCGCCTGA ATGGTATCGACGCTA glyQ 4665975 - 4665061 - | glycyl-tRNA synthetase subunit alpha TERM 4837 4666479 - 4666466 - g 73 -2.3 -5.00884 | opp_overlap 4666468 4666471, overlap 4666452 4666468 ACCGTGCTCAAAAAA CGGGA GCAT TACCG CAAATGCTTCTATCA tag 4666304 - 4666876 + | DNA-3-methyladenine glycosylase I YpsIP31758_4133 4666873 - 4667328 + | hypothetical protein TERM 4838 4667432 - 4667454 + G 71 -2.7 -4.87291 | gap 1, opp_overlap 4667431 4667430, overlap 4667420 4667432 4667433 4667440 CTGGCCGTAATAACC G-CGCTTTTG TGCG CAATAGCGAC TTTTTCATTGCCATA YpsIP31758_4134 4667410 - 4667532 + | hypothetical protein YpsIP31758_4135 4667688 - 4668347 + | putative outer membrane lipoprotein TERM 4839 4668433 - 4668405 - T 72 -7.6 -3.80133 | gap 2, opp_overlap 4668408, overlap 4668403 CACCGTGATAAAACA TGCGGATAATGTCC TTT GG-C-TTATCCGCA CTGCTCCCCATTTTC YpsIP31758_4136 4669122 - 4668478 - | hypothetical protein tkrA 4669641 - 4670621 + | 2-ketogluconate reductase TERM 4840 4670642 - 4670675 + F 76 -9.7 -3.34398 | overlap 4670640 CATCCGCCCGTCAAT TCTATTGGCCTGC CCTGTTTA GCGGGTCAATAGA TGTTTGGCAGGCCAG TERM 4841 4670849 - 4670815 - f 71 -4.2 -4.82901 | TCCTCCCTACAAAAA CCGCTCAGGGATGA GGCTATT TCTTCGCCAAGCGG CACACTGAATCTGCC malS 4670910 - 4672973 + | periplasmic alpha-amylase precursor YpsIP31758_4139 4673387 - 4673830 + | hypothetical protein TERM 4842 4674121 - 4674131 + F 91 -5.4 -5.59502 | AATTCTCTCCTCTTG CCAT TTC ATGG TTTTTTACTTTTTTA YpsIP31758_4140 4674286 - 4675551 + | valine--pyruvate transaminase TERM 4843 4675636 - 4675612 - T 100 -12.9 -4.23674 | opp_overlap 4675610 4675609 CTTCACCAATACAAA CAGGGCAGC CAATTAC GCTGCCCTG AAGTTTAATAGCCCG YpsIP31758_4141 4677322 - 4675664 - | hypothetical protein TERM 4844 4677529 - 4677498 - R 100 -10.2 -4.41548 | overlap 4677500 GGATACGCCACAAAA TGCACCGGAGAG CGGGGAAT CTCTCCGGTGAA AAGACAAACAAGGGA TERM 4845 4677527 - 4677500 - R 90 -12.8 -2.54186 | overlap 4677498 ATACGCCACAAAATG CACCGGAGAG CGGGGAAT CTCTCCGGTG AAAAGACAAACAAGG ibpB 4678159 - 4677695 - | heat shock chaperone IbpB ibpA 4678853 - 4678440 - | heat shock protein IbpA TERM 4846 4679029 - 4679017 - H 77 -3.5 -5.23316 | opp_overlap 4679017 CATGAGATCAAAAAA TTTTT CGC AAAAA ATCGTATTGGAAAAT TERM 4847 4679370 - 4679335 - g 72 -10.6 -3.05596 | gap 1, overlap 4679340 TACTCTGGCACCGAA GCCAATATCGCCATGCT CAA AG-ATGACGATACCGGC TGGGCACTACGCCCC YpsIP31758_4144 4679221 - 4679559 + | hypothetical protein TERM 4848 4680184 - 4680197 + F 78 -2.3 -5.43866 | AGGTAAGCTGCTGTT CCGGT AAGA AACGG TTTTTTTGCGCATTC YpsIP31758_4146 4680422 - 4681384 + | hypothetical protein YpsIP31758_4147 4681378 - 4682331 + | ornithine cyclodeaminase YpsIP31758_4148 4682369 - 4682593 + | hypothetical protein YpsIP31758_4149 4683878 - 4683069 - | sugar phosphatase TERM 4849 4684057 - 4684030 - R 93 -4.1 -5.81412 | gap 1 TTCAGGCAAAAAAAA GCCCAGTGGCAG TTTTC CCACC-CTGGAC TTTTTTATCTGGCCA gyrB 4686508 - 4684094 - | DNA gyrase subunit B YpsIP31758_4151 4687613 - 4686528 - | recombination protein F TERM 4850 4686843 - 4686854 + g 71 -7.2 -4.03234 | ACCATCGGCCCGAAT GCGG AAAT CCGC TTTATGTGGCCCAAC TERM 4851 4687116 - 4687134 + g 80 -12.4 -2.7556 | opp_overlap 4687113, overlap 4687118 ATAGCGACTAACCTG GCGCAGCG CGG CGTTGCGC TGCTTGAGTAACCTT TERM 4852 4687118 - 4687137 + g 79 -11.4 -3.10082 | opp_overlap 4687113, overlap 4687116 AGCGACTAACCTGGC GCAGCGCG GCGT TGCGCTGC TTGAGTAACCTTTTT TERM 4853 4687234 - 4687213 - G 77 -4.3 -5.0538 | opp_overlap 4687212 CCCCAGTCTAAAAAA GCGCGCC GGAATTTT GGCCCGC CATTTAATAACGTAA dnaN 4688886 - 4687786 - | DNA polymerase III subunit beta dnaA 4690279 - 4688891 - | chromosomal replication initiation protein TERM 4854 4690953 - 4690967 + H 75 -7.2 -4.29139 | AGCAGCCAAACGCGT TTACTG AAT CAGTAA TTATTTTAAGTTTAG rpmH 4690995 - 4691135 + | 50S ribosomal protein L34 rnpA 4691154 - 4691513 + | ribonuclease P TERM 4855 4691515 - 4691551 + F 100 -16.7 -3.14211 | CTCCCGCATCCTGAT CGGGCTGATTAGGGGCT ATC AGCTCGTAATCAGTCCG TTGCTGGGGCCGCGT TERM 4856 4691898 - 4691882 - g 71 -9.3 -3.6053 | overlap 4691878 CCGGTGATAAAGCAA GCCAGGC TGT GCCAGGC AGCGGTCAGGGTCAA TERM 4857 4692699 - 4692683 - g 80 -6.5 -4.79955 | AGATTCAGAATAAAA TGGCGGA AAT TGCGCCA CATCTGGACCTGACT TERM 4858 4693363 - 4693345 - g 75 -5.9 -4.56597 | CGTGGTCTGGAAAAA CGTGGCT TACAC AGCCGCG AGAAGAAAAAATAAC YpsIP31758_4157 4691737 - 4693377 + | putative inner membrane protein translocase component YidC YpsIP31758_4156 4693521 - 4693351 - | hypothetical protein TERM 4859 4693399 - 4693429 + gF 71 -4.6 -4.56775 | overlap 4693402 GCGATAATCATGAGT ATTTAGGGCGGTCA ATA TGACCGCCTTATTC TTTTTACAGAAGCCT TERM 4860 4693402 - 4693426 + gF 100 -15.1 -4.40561 | overlap 4693399 ATAATCATGAGTATT TAGGGCGGTCA ATA TGACCGCCTTA TTCTTTTTACAGAAG TERM 4861 4694257 - 4694279 + GH 74 -7.7 -4.07568 | opp_overlap 4694257, overlap 4694259 GGCGATTGTAACGGA TATCGCGGG CACCA CCCGTGATG TTTTACGGGAACACA TERM 4862 4694259 - 4694277 + GH 70 -8.1 -3.63744 | opp_overlap 4694257, overlap 4694257 CGATTGTAACGGATA TCGCGGG CACCA CCCGTGA TGTTTTACGGGAACA trmE 4693520 - 4694884 + | tRNA modification GTPase TrmE TERM 4863 4695116 - 4695103 - g 75 -5.9 -4.4891 | opp_overlap 4695103 4695098 CCCATGATTATAAAA CCACG TGTA CGCGG CTTTATCTGTGTGAC TERM 4864 4695288 - 4695304 + G 73 -3.6 -4.86731 | AGCATTTGGTTGTGG CGCCGA TACGC TGGGCG TTTTCTTTGAACGCC TERM 4865 4695425 - 4695410 - g 73 -5.4 -4.65895 | opp_overlap 4695410 GCTTGTACGCAAAAA GCATCA ACGG CGATGC GTTCTCTGATGAGAT YpsIP31758_4159 4695091 - 4696290 + | trans-2-enoyl-CoA reductase TERM 4866 4696304 - 4696348 + T 78 -9.3 -3.73534 | opp_overlap 4696313, overlap 4696306 4696313 AAGCTCCGGTTTATT GCTCAATAACCTGCTGCGTCA CTA TCACGCAGCAGGTTGATCATC TTCTTACTGGGGTTA TERM 4867 4696306 - 4696346 + T 80 -10.5 -3.44552 | opp_overlap 4696313, overlap 4696304 4696313 GCTCCGGTTTATTGC TCAATAACCTGCTGCGTCA CTA TCACGCAGCAGGTTGATCA TCTTCTTACTGGGGT TERM 4868 4696339 - 4696313 - T 100 -15.2 -3.62597 | opp_overlap 4696306 4696304 4696313 TTTATTGCTCAATAA CCTGCTGCGTCA CTA TCACGCAGCAGG TTGATCATCTTCTTA TERM 4869 4696313 - 4696339 + T 100 -15.2 -3.30452 | opp_overlap 4696313, overlap 4696306 4696304 TTTATTGCTCAATAA CCTGCTGCGTCA CTA TCACGCAGCAGG TTGATCATCTTCTTA YpsIP31758_4160 4696786 - 4696373 - | hypothetical protein YpsIP31758_4161 4698348 - 4697020 - | AzgA family purine transporter TERM 4870 4697453 - 4697438 - G 78 -6 -4.75219 | GAAGTACCAATAAAA GCACCG GCAA CGGAGC TGATACTGTCCACAT TERM 4871 4697808 - 4697783 - G 78 -6.1 -4.73677 | overlap 4697785 GCGATAATAAAGAAA CCCAGTGCACC CAAC AGTACACTGTG AGAGGTCAGATTACC TERM 4872 4698413 - 4698428 + H 75 -3.2 -5.19916 | AAAACCATTTGTTTA GAGCGT GATC ACACTC TTTTTTACCTCTTTT TERM 4873 4698659 - 4698633 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 4698642, overlap 4698634 4698649 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4874 4698660 - 4698634 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 4698642, overlap 4698633 4698649 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4875 4699371 - 4699386 + G 88 -8.2 -4.75472 | overlap 4699361 4699362 CCAGGCCGGGATTGC CGCCGG TATT CCGGTG TTTTATTACTGTGCC YpsIP31758_4162 4698841 - 4699509 + | 6-phosphogluconate phosphatase YpsIP31758_4163 4700280 - 4699525 - | polar amino acid ABC transporter permease TERM 4876 4699556 - 4699587 + g 82 -5.2 -5.15634 | gap 1, opp_overlap 4699558, overlap 4699561 GTTAGCTTGTTACAC CACCAGCGCCATG AACGTGC CATGGCGCTT-TG TTTTTTAATGGCATG TERM 4877 4699561 - 4699583 + g 100 -10.6 -5.0917 | opp_overlap 4699558, overlap 4699556 CTTGTTACACCACCA GCGCCATG AACGTGC CATGGCGC TTTGTTTTTTAATGG TERM 4878 4700175 - 4700159 - G 72 -10.1 -3.07522 | ACAGTGCCTAATACA GCTGAGG CTA CCCCAGC CATGATACTGATCAC YpsIP31758_4164 4701019 - 4700282 - | polar amino acid ABC transporter permease TERM 4879 4701189 - 4701143 - R 90 -11.7 -3.71873 | gap 1, overlap 4701147 GTACTGATAGCCAAA GTCATTGGCATTGCAGGTAGGC AATC ACCC-CCTGCAACGCCAAAAAC GAAGGGGATAAGTTA TERM 4880 4701185 - 4701147 - R 93 -13.3 -2.67244 | gap 1, overlap 4701143 TGATAGCCAAAGTCA TTGGCATTGCAGGTAGGC AATC ACCC-CCTGCAACGCCAA AAACGAAGGGGATAA YpsIP31758_4165 4702056 - 4701202 - | polar amino acid ABC transporter periplasmic amino acid-binding protein YpsIP31758_4166 4702908 - 4702276 - | hypothetical protein TERM 4881 4702680 - 4702693 + g 71 -3.9 -4.7416 | ACTGTGTACCTGCGG CAATA ATAG TATTG TTTTTAGCATTTTCC TERM 4882 4703233 - 4703209 - R 100 -7.8 -5.626 | GAGTGGATAAAAAAA CCGGTCAAAC GAGTA GGCTGACCGG GGTTAAATATTATTT phoU 4703965 - 4703243 - | transcriptional regulator PhoU pstB1 4704829 - 4704053 - | phosphate transporter subunit pstA1 4705797 - 4704910 - | phosphate transporter permease subunit pstC2 4706755 - 4705799 - | phosphate transporter permease subunit pstS 4708025 - 4706985 - | phosphate transporter subunit YpsIP31758_4172 4708230 - 4708349 + | hypothetical protein TERM 4883 4708460 - 4708443 - T 100 -9.1 -5.61913 | opp_overlap 4708443 AATAAAGACAAAAAA GCCGACA AATT TGCCGGC TTTCGTTAATACGCT glmS 4710337 - 4708508 - | D-fructose-6-phosphate amidotransferase glmU 4711908 - 4710538 - | bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase TERM 4884 4711160 - 4711133 - G 73 -5.4 -4.54727 | CCGCGCAAATCAAAA CGGGAGGGATCC AATA GCATCACGCCCG CTAACAATAATTTTT TERM 4885 4711334 - 4711324 - G 73 -5.4 -4.55287 | GTCAGTGATATAAAA CTCA CCT TGAG CATTATTATTATCCA TERM 4886 4711551 - 4711528 - G 71 -8.8 -3.63515 | TTTTACTGTCAACAA GCCAATCCCG CCCT CGGGCTTAGC GGCCAGCAGACGTTG TERM 4887 4712067 - 4712084 + r 91 -4.8 -5.61596 | AAAAGTGTCGGTGAT CGGCGA CGTTTT TTGCCG TTTTTTTGTCAAAAT TERM 4888 4712146 - 4712179 + r 75 -10.6 -2.80654 | gap 1, opp_overlap 4712146, overlap 4712145 TTTTACGACAGAAAA CAAGGATTATCCGAA AGAAA TTCG-ATAATCCTTG CTTATGATTTATTGA TERM 4889 4712179 - 4712146 - R 100 -10.6 -4.57353 | gap 1, opp_overlap 4712146 4712145 TTTTACGACAGAAAA CAAGGATTATCCGAA AGAAA TTCG-ATAATCCTTG CTTATGATTTATTGA TERM 4890 4712380 - 4712405 + r 93 -11.9 -3.62476 | opp_overlap 4712380 ATAAGTATTAAAAAA TGCCAGTCAGT TTTC ACCGACTGGCA TTCTATCGTTACTTA TERM 4891 4712405 - 4712380 - R 100 -14.1 -5.22794 | opp_overlap 4712380 ATAAGTATTAAAAAA TGCCAGTCAGT TTTC ACCGACTGGCA TTCTATCGTTACTTA atpC 4712951 - 4712529 - | F0F1 ATP synthase subunit epsilon atpD 4714355 - 4712973 - | F0F1 ATP synthase subunit beta atpG 4715374 - 4714511 - | F0F1 ATP synthase subunit gamma TERM 4892 4715428 - 4715398 - R 89 -12.7 -2.82516 | gap 1, overlap 4715423 CTCCTCATTACCAGA CGG-CCTGCTTTCC TAAC GAAAAGCAGGACCG CATAGCGTTACCAGG atpA 4716977 - 4715436 - | F0F1 ATP synthase subunit alpha atpH 4717525 - 4716992 - | F0F1 ATP synthase subunit delta atpF 4718010 - 4717540 - | F0F1 ATP synthase subunit B atpE 4718311 - 4718072 - | F0F1 ATP synthase subunit C atpB 4719185 - 4718361 - | F0F1 ATP synthase subunit A TERM 4893 4718863 - 4718843 - G 78 -6.1 -4.71426 | TGTTCATCAATAAAA CCCAAACAA AGA CTGTTAGGG CTAATGGTGCGATGA atpI 4719624 - 4719241 - | F0F1 ATP synthase subunit I gidB 4720911 - 4720291 - | glucose-inhibited division protein B YpsIP31758_4185 4721060 - 4720959 - | hypothetical protein gidA 4722946 - 4721057 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA