TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.511238 %AT, 3881257 nt, 32642 terms. Intergenic: 0.586084 %AT, H2T: 582137 nt, 4670 terms; T2T: 172192 nt, 3358 terms; H2H: 221617 nt, 3200 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|186893344|ref|NC_010634.1| Yersinia pseudotuberculosis PB1/+, complete genome (length 4695619) YPTS_0001 37 - 1389 + | chromosomal replication initiator protein DnaA YPTS_0002 1394 - 2494 + | DNA polymerase III, beta subunit TERM 1 3046 - 3067 + G 77 -4.3 -5.0538 | opp_overlap 3045 TTACGTTATTAAATG GCGGGCC AAAATTCC GGCGCGC TTTTTTAGACTGGGG TERM 2 3162 - 3143 - g 79 -11.4 -3.10082 | opp_overlap 3138, overlap 3146 AAAAAGGTTACTCAA GCAGCGCA ACGC CGCGCTGC GCCAGGTTAGTCGCT TERM 3 3164 - 3146 - g 80 -12.4 -2.7556 | opp_overlap 3138, overlap 3143 AAGGTTACTCAAGCA GCGCAACG CCG CGCTGCGC CAGGTTAGTCGCTAT TERM 4 3437 - 3426 - g 71 -7.2 -4.03234 | GTTGGGCCACATAAA GCGG ATTT CCGC ATTCGGGCCGATGGT YPTS_0003 2667 - 3752 + | DNA replication and repair protein RecF YPTS_0004 3772 - 6186 + | DNA gyrase, B subunit TERM 5 6223 - 6250 + F 93 -4.1 -5.81412 | gap 1 TGGCCAGATAAAAAA GTCCAG-GGTGG GAAAA CTGCCACTGGGC TTTTTTTTGCCTGAA YPTS_0005 6402 - 7211 + | Cof-like hydrolase TERM 6 7744 - 7766 + F 75 -9 -3.59979 | CGATAGTGCGAAAGC GCGGGGTTCC AAG GGGGCCACGC TTTGCACTGAACCCC TERM 7 7773 - 7819 + F 100 -15.4 -3.05384 | gap 1, opp_overlap 7778, overlap 7778 7783 GGGCCACGCTTTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 8 7813 - 7778 - f 93 -12.7 -3.05463 | opp_overlap 7773 7778 7783 ACGCTTTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 9 7778 - 7814 + F 77 -10.3 -3.19192 | gap 1, opp_overlap 7778, overlap 7773 7783 ACGCTTTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 10 7783 - 7793 + F 75 -5.4 -4.88736 | opp_overlap 7778, overlap 7778 7773 TTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPTS_0006 7824 - 8339 + | IS1661 DNA-binding protein TERM 11 9159 - 9141 - gT 77 -11 -2.73735 | overlap 9131 9129 9152 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPTS_0008 9338 - 9117 - | hypothetical protein YPTS_0007 8393 - 9178 + | integrase catalytic region TERM 12 9234 - 9212 - Gf 75 -9 -3.59979 | GGGGTTCAGTGCAAA GCGTGGCCCC CTT GGAACCCCGC GCTTTCGCACTATCG YPTS_0009 9737 - 10966 + | major facilitator transporter TERM 13 10971 - 11014 + T 73 -7.4 -4.08394 | overlap 10974 CTACCGAGTAAGTTT ATTCCCTGCTGGAGGAGC GTCAGGTA GCTTCTCCAGCAGGATAG TTTTACCCACGCTAT TERM 14 10974 - 11011 + T 100 -13.5 -3.08032 | overlap 10971 CCGAGTAAGTTTATT CCCTGCTGGAGGAGC GTCAGGTA GCTTCTCCAGCAGGA TAGTTTTACCCACGC YPTS_0010 11318 - 11115 - | hypothetical protein YPTS_0011 11439 - 11597 + | hypothetical protein YPTS_0012 11676 - 12257 + | hypothetical protein TERM 15 12286 - 12259 - f 78 -9.2 -3.62235 | opp_overlap 12265, overlap 12257 12262 ATGAAAGAAAATAGA CAGCAAGGAGGA TCAT TCCTCCTTATTG GAAAGATATCTATAT TERM 16 12265 - 12280 + F 75 -9 -3.62224 | opp_overlap 12262 12259 12257 GAAAATAGACAGCAA GGAGGA TCAT TCCTCC TTATTGGAAAGATAT YPTS_0013 12526 - 13713 + | transposase mutator type TERM 17 13709 - 13730 + T 84 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPTS_0014 14323 - 13793 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 18 14110 - 14124 + g 79 -10 -3.87815 | opp_overlap 14112 GTGCCCAACGGCAAT CACTGG CGA CCAGTG TTTGTAGCGCTCCAG TERM 19 14306 - 14286 - G 93 -14.1 -3.44051 | opp_overlap 14284 CCTGTACCACTATAA GCCGCTATT CCT AATAGCGGC GGTGACTTGTAGTTC YPTS_0015 14910 - 14323 - | molybdopterin-guanine dinucleotide biosynthesis protein A YPTS_0016 15064 - 15333 + | hypothetical protein YPTS_0017 15424 - 16410 + | aminoglycoside phosphotransferase YPTS_0018 16438 - 17061 + | DSBA oxidoreductase TERM 20 17078 - 17094 + F 100 -6.5 -6.11392 | opp_overlap 17077 17078 TTAGTACATAAAGAG GGGGC TTTTGTT GCCCC TTTTTTTATTTATTT TERM 21 17699 - 17732 + G 100 -10.5 -4.72272 | gap 1 ATGCTACGCAGTCTG CTGCTGCAATATCGAC CAA GTC-ATGTTGCAGTAG TTTTTGATGCAAAAG TERM 22 18886 - 18869 - g 83 -9.9 -4.19817 | opp_overlap 18881 GGTATCGATCTAAAA GGTATCG CTTT CGATACC ATGCTGGAGTCTTAT YPTS_0019 17552 - 20350 + | DNA polymerase I TERM 23 20611 - 20581 - T 76 -11.1 -2.62184 | opp_overlap 20583 TTTGGCTGTATATTA GCCGCCCCAGTCA TTTAT TGACTGGGGCGTT TTTTATGGGGATTTT TERM 24 20583 - 20609 + T 100 -18.1 -5.25803 | opp_overlap 20581 TGGCTGTATATTAGC CGCCCCAGTCA TTTAT TGACTGGGGCG TTTTTTATGGGGATT YPTS_0020 21408 - 20758 - | GTP-binding protein HSR1-related TERM 25 21954 - 22006 + H 100 -13.6 -3.99405 | gap 1, opp_overlap 21944 21969, overlap 21969 GGATATCCTTCCGCA GAAG-GTGCGAAAAAAGGCGACAGG TTAA CCTGCCGCCTTTTTTCTTTCTCTTC TTTCTGCTAGATTCC TERM 26 21969 - 21990 + H 100 -11.5 -5.7827 | opp_overlap 21969, overlap 21954 GAAGGTGCGAAAAAA GGCGACAGG TTAA CCTGCCGCC TTTTTTCTTTCTCTT TERM 27 21990 - 21969 - H 100 -13.7 -5.03145 | opp_overlap 21969 21954 GAAGGTGCGAAAAAA GGCGACAGG TTAA CCTGCCGCC TTTTTTCTTTCTCTT YPTS_0021 22153 - 22719 + | hypothetical protein TERM 28 23702 - 23676 - g 71 -8.6 -3.70102 | opp_overlap 23675 ACGTAAAATCAAAGA CGCTGATCTGCC AAC GGCGGAGCAACG GTTGGATATTTTGCA YPTS_0022 22906 - 24279 + | oxygen-independent coproporphyrinogen III oxidase TERM 29 24318 - 24285 - T 83 -11.8 -2.80994 | gap 1, opp_overlap 24289 24296 TGTAATCTGACGATA TCACCCTC-AGTGCG GTTAT CGCTCTTGAGGGTGA CCATCTGGCGGGAAC YPTS_0023 25745 - 24333 - | nitrogen metabolism transcriptional regulator, NtrC, Fis family TERM 30 24715 - 24726 + g 74 -4.4 -4.98531 | overlap 24722 AGCGCCGCTTCGGTC TCTG GATG CAGA TTTTTGCTTTCCACG YPTS_0024 26802 - 25753 - | signal transduction histidine kinase, nitrogen specific, NtrB TERM 31 26954 - 26937 - R 100 -11.3 -5.28826 | AAAGTGGAGAAAAAA GCCCATC CTAA GATGGGC CAAAAGTTTCCACGG YPTS_0025 28464 - 27055 - | glutamine synthetase, type I TERM 32 27677 - 27687 + g 71 -6.8 -4.13945 | CCTGAGCCGTTATCG CCGA ACA TCGG TTTTGGCATAAAGGT TERM 33 28787 - 28760 - H 70 -7.8 -3.57561 | gap 1, opp_overlap 28760 TGCCAACTTTCCAAA CCCCCCAT-TTAT GCC ATATCATGGGGGG TCTGCTGATAATCAG YPTS_0026 29027 - 30850 + | GTP-binding protein TypA TERM 34 30872 - 30896 + F 100 -14.3 -3.75738 | TTTGCATTGTTGATA CTTAGGGCGCT CAA GGCGCCCTGAG TTCTTACTCCTCCTA YPTS_0027 31172 - 31762 + | HAD family hydrolase YPTS_0028 31859 - 32743 + | ribonuclease BN YPTS_0029 32750 - 33187 + | D-tyrosyl-tRNA(Tyr) deacylase YPTS_0030 33373 - 34296 + | thioesterase domain-containing protein TERM 35 34335 - 34316 - T 79 -8.6 -4.11216 | opp_overlap 34316 CTGGTACCCTTAAAA TCACTGAC ATGA GCCAGTGA TTTGCCGTCGGATGA YPTS_0031 36140 - 34431 - | AsmA family protein TERM 36 36261 - 36236 - R 100 -6.9 -5.67063 | gap 1, opp_overlap 36236 CGGACCATAAAAAAA TGGCCGG-CATC ATT AATGACCGACCA TTTCAGTGATGTGTT YPTS_0032 37705 - 36287 - | uracil-xanthine permease TERM 37 36742 - 36754 + g 76 -9.1 -3.88498 | opp_overlap 36741 CATTGGCCAGTACAC CGCCT TTT AGGCG TTTCATATATAACGG TERM 38 37295 - 37316 + g 71 -2.9 -5.00616 | CAGCGCCGCCATCAT CGTTGGG ATATCCGC CCCACCG TTTTTTAGCGCCAGC YPTS_0033 37910 - 39124 + | sodium/glutamate symporter TERM 39 39228 - 39213 - T 78 -9 -3.81146 | GCTGGGAATTAAGAA GCCTCA TGAA TGAGGC TGAGGTTATTGACAA TERM 40 39307 - 39333 + T 72 -7.2 -3.9749 | gap 1, opp_overlap 39295, overlap 39306 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT YPTS_0034 41571 - 39490 - | ATP-dependent DNA helicase RecG YPTS_0035 42231 - 41572 - | tRNA/rRNA methyltransferase (SpoU) TERM 41 41883 - 41897 + g 77 -4.2 -5.14563 | CCAGTGCCAGCGCTT CTGGTG AAA TACCGG TTTTTTCCTGACCCA YPTS_0036 44378 - 42270 - | (p)ppGpp synthetase I, SpoT/RelA TERM 42 43178 - 43156 - G 75 -7.6 -4.28977 | opp_overlap 43156, overlap 43157 ACAACATAGGCAAAA TCGACCGGTG TGG CACCAGCCGG TAATTCCACAATGCG TERM 43 43177 - 43157 - G 76 -11.1 -3.16302 | opp_overlap 43156, overlap 43156 CAACATAGGCAAAAT CGACCGGTG TGG CACCAGCCG GTAATTCCACAATGC TERM 44 43822 - 43840 + g 73 -4.5 -4.68593 | opp_overlap 43822 TAGAGTGCTTCAAAA CCCAGCT CTTCC AGCTCGG TTTTTAAATGATGAA YPTS_0037 44673 - 44398 - | DNA-directed RNA polymerase, omega subunit YPTS_0038 45351 - 44728 - | guanylate kinase TERM 45 45284 - 45296 + g 71 -9.1 -3.54408 | opp_overlap 45284, overlap 45280 TGTGTTTTTAACAAA GCCTG AAT CAGGC TTGATTTCCCTGCCC TERM 46 45296 - 45284 - G 80 -9.1 -4.15044 | opp_overlap 45280 45284 TGTGTTTTTAACAAA GCCTG AAT CAGGC TTGATTTCCCTGCCC TERM 47 46118 - 46095 - g 71 -7.4 -4.02206 | gap 1 AACTCAAAGATGAAA CCGCCCT-CAC GAG GTGGATGGCGG GGCGGAAAAATCTCT TERM 48 47005 - 47017 + G 73 -3.3 -4.8543 | ACGCTTACCACATGG CTGTG AAC CTCAG TTTTTATCCCGCTTG YPTS_0039 45752 - 47455 + | NAD-dependent DNA ligase adenylation YPTS_0040 48092 - 47475 - | hypothetical protein TERM 49 48020 - 47999 - G 71 -7.3 -4.10566 | AGGCAATAATAATAA CGCCAAACA TATC CATTTGGCG GCGACCCGCAGCCAG YPTS_0041 48527 - 48435 - | hypothetical protein TERM 50 48549 - 48580 + r 100 -15.9 -5.5208 | opp_overlap 48552 48556 GGCTTTTCCTGCGAA CCAGCAAGCCCGC AGATTA GCGAGCTTGCTGG TTTTTTGTGTTCTGG TERM 51 48577 - 48552 - R 88 -12.6 -2.70932 | opp_overlap 48549, overlap 48556 TTTTCCTGCGAACCA GCAAGCCCGC AGATTA GCGAGCTTGC TGGTTTTTTGTGTTC YPTS_0042 49476 - 48613 - | YicC domain-containing protein YPTS_0043 49603 - 50319 + | ribonuclease PH TERM 52 50328 - 50344 + F 100 -9.4 -5.41143 | opp_overlap 50325 ATCATAAATTTATTA GGCGAC GGATA GTCGCC TTTTTTTACCCGCTA YPTS_0044 50486 - 51133 + | orotate phosphoribosyltransferase TERM 53 51160 - 51217 + T 100 -21.6 -3.68569 | gap 1, opp_overlap 51151 51170, overlap 51161 51162 51182 ATAACATGGGGTAAT C-CCGAATCAAGCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGCTTGATTCGCTG TTCTCTCTATGTCTT TERM 54 51161 - 51215 + T 100 -25.3 -3.40967 | opp_overlap 51151 51170, overlap 51160 51162 51182 TAACATGGGGTAATC CCGAATCAAGCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGCTTGATTCGC TGTTCTCTCTATGTC TERM 55 51162 - 51214 + T 100 -28.8 -2.63857 | opp_overlap 51151 51170, overlap 51161 51160 51182 AACATGGGGTAATCC CGAATCAAGCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGCTTGATTCG CTGTTCTCTCTATGT TERM 56 51206 - 51170 - T 100 -15.2 -3.35867 | opp_overlap 51162 51161 51160 51182 GTAATCCCGAATCAA GCTACGCCAAGAGGGC CGTTT GCCCTTTTTGCGTAGC TTGATTCGCTGTTCT TERM 57 51182 - 51194 + T 77 -6.2 -4.68424 | opp_overlap 51170, overlap 51162 51161 51160 CAAGCTACGCCAAGA GGGC CGTTT GCCC TTTTTGCGTAGCTTG YPTS_0045 51864 - 51268 - | TetR family transcriptional regulator TERM 58 51398 - 51433 + g 71 -4 -4.82901 | opp_overlap 51397, overlap 51398 51397 TGGGTGGCCAGTAAC GCTTCATCATGGATAA AGCC TTGTCCATCACGCAGC TTTTTCTCACGAAGG TERM 59 51601 - 51618 + g 77 -4.8 -4.90906 | CAGCAGGATTAAGCG GAGGCG ATTAAA CGTCTC TTTTTCATCTTGTAG TERM 60 51917 - 51944 + r 91 -12 -3.56562 | gap 1, opp_overlap 51912 AAAACCCAAACACCG GCCGCTCTGGGAA CAA TGCCCAG-GCGGC TTATGTGATAGCTTT YPTS_0046 52444 - 51986 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YPTS_0047 53753 - 52422 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 61 53467 - 53456 - G 71 -7.2 -4.04209 | GCAAATCATCAGAAA CGGG ATAG CCCG AGACTGCCTGTAGCG YPTS_0048 53833 - 54501 + | DNA repair protein RadC YPTS_0049 54764 - 55000 + | ribosomal protein L28 YPTS_0050 55012 - 55179 + | ribosomal protein L33 TERM 62 55186 - 55165 - f 83 -8.9 -4.07877 | GTACTCTATAAAGAA GCTAAAATT AAGT AATTTTAGC GGACTAAGAAAAACC TERM 63 55221 - 55194 - f 95 -12.8 -3.16683 | opp_overlap 55200, overlap 55200 ATTTTAGCGGACTAA GAAAAACCCGGC CTTG GCCGGGTTTTTT ATTATATAAAGTACA TERM 64 55215 - 55200 - f 100 -11.8 -5.1356 | opp_overlap 55200, overlap 55194 GCGGACTAAGAAAAA CCCGGC CTTG GCCGGG TTTTTTATTATATAA TERM 65 55200 - 55215 + F 100 -11.8 -5.60689 | opp_overlap 55200 55194 GCGGACTAAGAAAAA CCCGGC CTTG GCCGGG TTTTTTATTATATAA YPTS_0051 55262 - 56071 + | formamidopyrimidine-DNA glycosylase YPTS_0052 56556 - 56077 - | pantetheine-phosphate adenylyltransferase YPTS_0053 57335 - 56553 - | glycosyl transferase family protein YPTS_0054 58655 - 57336 - | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YPTS_0055 59998 - 59033 - | lipopolysaccharide heptosyltransferase I YPTS_0056 61062 - 59998 - | lipopolysaccharide heptosyltransferase II YPTS_0057 62025 - 61093 - | ADP-L-glycero-D-manno-heptose-6-epimerase YPTS_0058 62271 - 63482 + | 2-amino-3-ketobutyrate coenzyme A ligase YPTS_0059 63492 - 64517 + | L-threonine 3-dehydrogenase TERM 66 64530 - 64570 + T 86 -11.3 -3.3506 | opp_overlap 64568, overlap 64523 TAGTTTATCCCCTTC GGGCTTGGTGTTGCA AAACTACCCGC TGCGATACCAAGCCC TTGTCAGGATTTACG YPTS_0060 65665 - 64655 - | protein of unknown function DUF610 YibQ TERM 67 65237 - 65225 - G 70 -7.7 -3.79687 | overlap 65223 65228 ACTGTCGAGAAAATA GAGCT GGT AGCTC CCCAGTGCCTGCATC YPTS_0061 67059 - 65689 - | peptidase M23 TERM 68 65932 - 65946 + g 76 -10 -3.76952 | opp_overlap 65931 65928, overlap 65939 AGCCAGTAAAACACG GCCATC GGC GATGGC TTTGACTTCGCTGCC TERM 69 66769 - 66783 + g 93 -2.1 -6.13503 | TTTTAGTTGATCCAG CAATG AACTG CGTTG TTTTTTTTGTTGCTG TERM 70 67012 - 66970 - G 82 -12.1 -3.11634 | opp_overlap 66999, overlap 66974 CGGTAGACGACTCAA CTTATCTGACAGCAGAGAG GGAGA CTCTCTACCGTCAGAGACG GCATCTTTCGTAGTT TERM 71 67008 - 66974 - G 100 -15.9 -2.55722 | opp_overlap 66999, overlap 66970 AGACGACTCAACTTA TCTGACAGCAGAGAG GGAGA CTCTCTACCGTCAGA GACGGCATCTTTCGT YPTS_0062 68616 - 67069 - | phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent TERM 72 67233 - 67262 + g 71 -8.6 -3.74747 | gap 1 GGCTGGTATGGGCGG TGTGTG-CCTGGC CAGTT GCCGGGTCACGCA TTTGCTCAGCGTTGC TERM 73 67609 - 67634 + g 73 -5.4 -4.51097 | overlap 67598 GACGTGAGCATATTT CTCAGTTTCG GAAATG CGTAACTGGG TTTTATCATGCTTCA TERM 74 68195 - 68183 - G 74 -9.1 -3.6269 | opp_overlap 68183 68182, overlap 68181 GCATGCAGATAAATA GCGGT TGC ACCGC GTTTAGCCGCCAGCT YPTS_0063 69014 - 69448 + | rhodanese domain-containing protein YPTS_0064 69567 - 69815 + | glutaredoxin 3 TERM 75 69790 - 69810 + F 82 -10.4 -3.68827 | ACGCCCTGGATGCGC GCGGTGGG CTAGA CCCACTGC TTTAACTCGTCAGTG YPTS_0065 69903 - 70379 + | protein-export protein SecB TERM 76 70972 - 71000 + G 71 -10.4 -2.77781 | gap 1, overlap 70968 70992 AGTGAAAAACGTGAT TGCCATCGGTGCA GGTA TGT-CCGATGGCA TCGGTTTTGGTGCGA TERM 77 70992 - 71004 + G 75 -7.7 -4.26076 | overlap 70972 70968 TCGGTGCAGGTATGT CCGAT GGC ATCGG TTTTGGTGCGAATGC YPTS_0066 70379 - 71398 + | NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YPTS_0067 71661 - 72485 + | serine O-acetyltransferase YPTS_0068 73096 - 72608 - | RNA methyltransferase TERM 78 73603 - 73613 + G 79 -2.4 -5.50723 | TTGGCAGCTCAACTG GGGC TTA GCAC TTTTTATTTTCATCG YPTS_0069 73285 - 74349 + | AraC family transcriptional regulator TERM 79 74386 - 74359 - T 83 -11.4 -3.04461 | gap 1, opp_overlap 74353 CACTGATTCTCAATA TCTGCCCGAACCA CAT TGAT-CGGGCAGA TAGACATTGATCGGG YPTS_0070 75793 - 74417 - | integral membrane sensor signal transduction histidine kinase TERM 80 74556 - 74569 + g 73 -9.5 -3.32498 | CCTGTTCCTCCCGAC GCCCG ATCT CGGGC TTCATCTGTACGATA TERM 81 74795 - 74769 - G 71 -4.2 -4.80453 | overlap 74770 GGATTACAAAATAAA GGCCATGGCCCC GGA GGTGCCGTGACT ACCAGCGTTTTACCC YPTS_0071 76488 - 75790 - | two component transcriptional regulator TERM 82 76806 - 76791 - g 77 -6.8 -4.49316 | ATGATGAACAAGAAA GGCGAC CGCG GTCACC ATAACATGTTTGATG YPTS_0072 76662 - 77150 + | protein of unknown function Spy-related TERM 83 77207 - 77225 + F 100 -14.6 -5.71638 | CCATCCCTGTCTTTC GCCCTCCA TGA TGGAGGGC TTTTTTTGCTTATTG YPTS_0073 77401 - 77508 + | hypothetical protein YPTS_0074 77828 - 78787 + | putative transposase YhgA family protein TERM 84 79072 - 79050 - T 74 -7 -4.2535 | AGACCATAGTGAAAA CGGCGGAATA CGG TATTCCACAG ACCAGAAATTCTCTG YPTS_0075 79215 - 79093 - | transposase, IS4 family protein YPTS_0076 79349 - 80251 + | cation diffusion facilitator family transporter YPTS_0077 80469 - 81452 + | 6-phosphofructokinase TERM 85 81477 - 81529 + F 100 -13.1 -4.98531 | gap 3, opp_overlap 81488 TCGCTCGTTCGGCAA GCCCTCGAAAT-TGAACTGATCCCAA AAAG TTGGG--CAGTTCACATTGCGAGGGC TTTTTACTTTCAGCC YPTS_0078 81673 - 82662 + | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 86 82790 - 82827 + G 73 -8.5 -3.91897 | gap 1, opp_overlap 82798 TACCAACCGCTTTAT CG-CCAACACCACATCGT TGT ATGTTGTGGTGTTGAACG TTTATCGCTACCGCG YPTS_0079 82740 - 82880 + | hypothetical protein YPTS_0080 83688 - 82912 - | extracellular solute-binding protein TERM 87 83761 - 83725 - R 71 -8.8 -3.39908 | gap 1, opp_overlap 83756, overlap 83723 83721 83726 TTGCGCCAAAAGACA GGCCACCGAAAAC-AGG ATGA CCTTGTCTTCAGTGGCT AAGCGACGTTTAAAT TERM 88 83760 - 83726 - R 88 -12.3 -2.63623 | gap 1, opp_overlap 83756, overlap 83725 83723 83721 TGCGCCAAAAGACAG GCCACCGAAAAC-AGG ATGA CCTTGTCTTCAGTGGC TAAGCGACGTTTAAA YPTS_0081 85233 - 83806 - | anion transporter YPTS_0082 86012 - 85299 - | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase TERM 89 85732 - 85722 - G 87 -6.8 -5.15634 | CAGGTCACCAAAAAA GCCA TCA TGGC ATTCGGAGGTCGGCG YPTS_0083 86746 - 86009 - | LmbE family protein YPTS_0084 86940 - 88118 + | LysR family transcriptional regulator TERM 90 88311 - 88290 - T 84 -6.5 -5.03994 | opp_overlap 88284 88282 88290, overlap 88284 TTGGATATATAAAAA CCGGCGC TTTTATTT ACGCCGG TTTTTGTGTTGTACC TERM 91 88290 - 88311 + T 85 -5.8 -5.1523 | opp_overlap 88290 88284, overlap 88284 88282 TTGGATATATAAAAA CCGGCG CTTTTATTTA CGCCGG TTTTTGTGTTGTACC YPTS_0085 89116 - 88349 - | triosephosphate isomerase TERM 92 89160 - 89174 + r 80 -10 -3.70902 | opp_overlap 89157 89160 GGTCAATAATAATGA CTGCCT GAC AGGCAG TTTACCTGTCCAACA TERM 93 89174 - 89160 - R 73 -10 -3.03309 | opp_overlap 89160, overlap 89157 GGTCAATAATAATGA CTGCCT GAC AGGCAG TTTACCTGTCCAACA YPTS_0086 89880 - 89245 - | hypothetical protein YPTS_0087 90094 - 90462 + | hypothetical protein YPTS_0088 91549 - 90803 - | oxidoreductase FAD/NAD(P)-binding subunit TERM 94 91680 - 91651 - R 70 -7.8 -3.68619 | TCTAACTGATGTAAA CTTTACGGCGCT TTTACG AGCGCCGTGCAG AATAAAAATGATTGC YPTS_0089 92714 - 91704 - | fructose-1,6-bisphosphatase, class II TERM 95 91966 - 91980 + g 74 -9.2 -3.70446 | overlap 91967 CGTAATAACTCTTGT TCGCCG ATG CGGCGG TTATCTTCACTGTCG TERM 96 91967 - 91979 + g 71 -10.5 -2.81786 | overlap 91966 GTAATAACTCTTGTT CGCCG ATG CGGCG GTTATCTTCACTGTC TERM 97 92876 - 92854 - R 100 -11.3 -4.93365 | opp_overlap 92849 92854 TCTCACAACGAAAAA CGCGCCATC GGGGG GATAGCGCG TTGTGTTTGGTTTAA TERM 98 92854 - 92876 + r 80 -9.1 -3.93578 | opp_overlap 92854, overlap 92849 TCTCACAACGAAAAA CGCGCCATC GGGGG GATAGCGCG TTGTGTTTGGTTTAA YPTS_0090 94490 - 92967 - | glycerol kinase TERM 99 92997 - 93008 + g 75 -3.6 -5.01732 | TTCCCAATCCCGGGC GCGG GCCA CTGC TTTTTTCCAGCCCTT TERM 100 93674 - 93684 + g 82 -5.4 -5.0538 | GCAGGAAGCAACCCG TACC GTA GGTA TTTTTTGCCATGCCC YPTS_0091 95515 - 94667 - | MIP family channel protein YPTS_0092 96159 - 96398 + | hypothetical protein TERM 101 96529 - 96500 - T 100 -13.7 -4.44046 | opp_overlap 96505 GTCAGCGGAAATAAA GTAAAGGGCGATA TCAG TATCGCCCTTTTC TGTGGGTGCGCCGAT TERM 102 96505 - 96524 + T 100 -12.2 -4.55287 | opp_overlap 96500 CGGAAATAAAGTAAA GGGCGATA TCAG TATCGCCC TTTTCTGTGGGTGCG YPTS_0093 98860 - 96746 - | ABC transporter related YPTS_0094 100145 - 98853 - | secretion protein HlyD family protein YPTS_0095 100358 - 100597 + | hypothetical protein TERM 103 100606 - 100631 + F 100 -14.1 -3.33815 | opp_overlap 100606 GCAGTAATAAGTAAA TATGCCAGCGT GAAA GCGCTGGCATA TTAATTGAAAGGGAT TERM 104 100631 - 100606 - f 100 -13.4 -4.09805 | opp_overlap 100606 GCAGTAATAAGTAAA TATGCCAGCG TGAAAG CGCTGGCATA TTAATTGAAAGGGAT YPTS_0096 101227 - 101811 + | hypothetical protein YPTS_0097 102413 - 101928 - | regulator of ribonuclease activity A YPTS_0098 103472 - 102555 - | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 105 103430 - 103453 + g 91 -13.2 -3.27029 | overlap 103424 103429 103428 GTGGTCGTAGGCTTT CCAGCCAAGC CTGG GTTTGGCTGG TGTTGATTGATAGGC TERM 106 103601 - 103579 - R 70 -2.8 -5.06451 | TATCATGTCAAAAAA TTATGACGTT ATC AAAATCATAA TGCGATAAGAATCAT TERM 107 103660 - 103630 - R 100 -15.4 -4.9934 | overlap 103632 103633 103635 ATAATACGATAAAAA CAGGAGTGGGAGGC GAT GCCTCCCACTCGGG ATACTCCATATGGAT TERM 108 103658 - 103632 - R 100 -16.6 -4.10552 | overlap 103630 103633 103635 AATACGATAAAAACA GGAGTGGGAGGC GAT GCCTCCCACTCG GGATACTCCATATGG TERM 109 103657 - 103633 - R 100 -20.1 -3.04705 | overlap 103632 103630 103635 ATACGATAAAAACAG GAGTGGGAGGC GAT GCCTCCCACTC GGGATACTCCATATG TERM 110 103655 - 103635 - R 100 -16.9 -3.0648 | overlap 103633 103632 103630 ACGATAAAAACAGGA GTGGGAGGC GAT GCCTCCCAC TCGGGATACTCCATA YPTS_0099 105038 - 103707 - | heat shock protein HslVU, ATPase subunit HslU YPTS_0100 105633 - 105109 - | 20S proteasome A and B subunits YPTS_0101 106479 - 105733 - | cell division protein FtsN YPTS_0102 107672 - 106644 - | LacI family transcription regulator YPTS_0103 107938 - 107795 - | hypothetical protein TERM 111 107941 - 107894 - G 78 -5.6 -4.85918 | GATCAGACAATAAAA GATCGGGCGAACCCCTTT TTCTTGACGCTG CAAGGGGTTCGCCATATC CCCTCACCTGAATCA YPTS_0104 110223 - 108025 - | primosomal protein N' TERM 112 110375 - 110408 + H 90 -11.2 -3.94409 | opp_overlap 110381, overlap 110378 GATATCAAATCCTGT TAACCATCGTTGCT TATTTT ATCAACGATGGTTA TTTATCAATCGTGTG TERM 113 110378 - 110405 + H 79 -8.5 -4.09519 | opp_overlap 110381, overlap 110375 ATCAAATCCTGTTAA CCATCGTTGCT TATTTT ATCAACGATGG TTATTTATCAATCGT YPTS_0105 110476 - 110691 + | ribosomal protein L31 TERM 114 110713 - 110727 + T 100 -12.8 -5.45652 | opp_overlap 110713 CCCGTCAGATAAAAA GGCGCC TTG GGCGCC TTTTTTGTTGCCACT TERM 115 110727 - 110713 - T 100 -12.8 -4.96848 | opp_overlap 110713 CCCGTCAGATAAAAA GGCGCC TTG GGCGCC TTTTTTGTTGCCACT TERM 116 111096 - 111124 + T 79 -3.1 -5.31275 | opp_overlap 111096 TGCGTAAAGAAAAAA TGGCTAAGCACAA TTG TTATGCTGAACCA TTTTTTGTAGTGAAA TERM 117 111124 - 111096 - T 100 -7.5 -5.63517 | opp_overlap 111096 TGCGTAAAGAAAAAA TGGCTAAGCACAA TTG TTATGCTGAACCA TTTTTTGTAGTGAAA TERM 118 111212 - 111177 - T 74 -4.8 -4.74801 | overlap 111160 111159 111179 111183 TAACTGCAGTAAAAA TATTAACTGCAGTGAA AAGG TTAACTGCAGTGAAAA GGTTAATTGTAGCGA TERM 119 111210 - 111179 - T 72 -7.4 -3.98658 | overlap 111160 111159 111177 111183 ACTGCAGTAAAAATA TTAACTGCAGTGAA AAGG TTAACTGCAGTGAA AAGGTTAATTGTAGC TERM 120 111206 - 111183 - T 73 -8.2 -3.62531 | overlap 111160 111159 111179 111177 CAGTAAAAATATTAA CTGCAGTGAA AAGG TTAACTGCAG TGAAAAGGTTAATTG YPTS_0106 111688 - 111233 - | YiaAB two helix domain-containing protein YPTS_0107 112354 - 112037 - | methionine repressor, MetJ YPTS_0108 112651 - 113892 + | O-succinylhomoserine (thiol)-lyase TERM 121 115430 - 115448 + G 85 -10.3 -4.08767 | TTACGATGGTTTGGA TGCCAGC CGGAC GCTGGCA TTTTACAACGATGAA YPTS_0109 113895 - 116330 + | aspartate kinase YPTS_0110 116563 - 117447 + | 5,10-methylenetetrahydrofolate reductase YPTS_0111 117750 - 117583 - | hypothetical protein TERM 122 117902 - 117935 + H 87 -5.5 -5.47399 | opp_overlap 117902 TTTAAGGTCAAAGAC CAATTCAAAATCT AAAGAAGA GGGTTTTGAATTG TTTTTTTGACGTTGA TERM 123 118045 - 118017 - g 87 -11 -4.1899 | gap 1 GGACGCCAGCGAAAA GCGCGCTTGGGCA GGGA TGCCC-ATCGCGC TGGCTCGTCAGCCCG TERM 124 118112 - 118137 + G 100 -16.2 -2.52543 | GCGCAAGCCGCAGGT GCAGGAGGGC CGGCTA GCCCTCCTGC TCGGTTGAGGCGACT YPTS_0112 117990 - 118145 + | hypothetical protein YPTS_0113 120944 - 118308 - | phosphoenolpyruvate carboxylase YPTS_0114 122481 - 121318 - | acetylornithine deacetylase (ArgE) YPTS_0116 123838 - 123629 - | hypothetical protein YPTS_0115 122732 - 123736 + | N-acetyl-gamma-glutamyl-phosphate reductase YPTS_0117 123916 - 124692 + | acetylglutamate kinase TERM 125 125727 - 125713 - g 89 -5.7 -5.24796 | overlap 125715 125717 GCCACAGAAGAAAAA TCCAG ATGCG CTGGA GCTCATCCGTGGTAA TERM 126 126186 - 126170 - g 71 -9.3 -3.5594 | opp_overlap 126161 126165 126181, overlap 126171 AAGCGAGTGGCCAAA GGCGGCG TTT CGCCGCA GCAGGTTGCATCGGC TERM 127 126185 - 126171 - g 81 -12.8 -2.73243 | opp_overlap 126161 126165 126181, overlap 126170 AGCGAGTGGCCAAAG GCGGCG TTT CGCCGC AGCAGGTTGCATCGG YPTS_0118 124859 - 126232 + | argininosuccinate lyase TERM 128 126290 - 126257 - f 76 -10.1 -3.33261 | opp_overlap 126261 TTTTAATCTTGAGAA CGGGGCGGGCCGCTA ATTG CAGCGGCCCGCTTTG CATTAACAGTTATTA TERM 129 126261 - 126286 + F 100 -17.6 -3.75897 | opp_overlap 126257 AATCTTGAGAACGGG GCGGGCCGCT AATTGC AGCGGCCCGC TTTGCATTAACAGTT TERM 130 126882 - 126862 - g 70 -2 -4.92669 | opp_overlap 126881, overlap 126881 GAGATAAAAAAACAA TAATTTCA GTGAA TAAAATTA CAACTTGTATATTAT TERM 131 128625 - 128635 + G 71 -6.8 -4.25256 | GACGATCACTTTGCC GCGA AGG TCGC TTATTTTGATACCCG YPTS_0119 126831 - 129323 + | TonB-dependent heme/hemoglobin receptor family protein TERM 132 129424 - 129391 - f 100 -18.3 -4.26351 | overlap 129392 CAGCAAGTGAATAAA TCCCGCATCATTGAC GGCA GTCAATGATGCGGGT GAGAGAACACAGCTA TERM 133 129423 - 129392 - f 100 -21.8 -3.15087 | overlap 129391 AGCAAGTGAATAAAT CCCGCATCATTGAC GGCA GTCAATGATGCGGG TGAGAGAACACAGCT TERM 134 129514 - 129493 - f 75 -10.3 -2.75712 | opp_overlap 129495, overlap 129490 129495 TCACTTATGGAACCA CATGGATTA ATAA TAATCCATG TTCACCGTAACAATT YPTS_0120 129551 - 130168 + | extracellular heme acquisition hemophore HasA TERM 135 130199 - 130175 - f 100 -13.7 -5.06414 | opp_overlap 130173 130194 GCCGCTTAAGAAAAA CAGCCAGAAAA TAA CTTTCTGGCTG AGTCATTGATACCAC YPTS_0121 130334 - 132142 + | type I secretion system ATPase YPTS_0122 132218 - 133546 + | HlyD family type I secretion membrane fusion protein YPTS_0123 133611 - 134414 + | TonB family protein TERM 136 134511 - 134495 - T 100 -10.8 -4.7254 | opp_overlap 134495 ACGGGGGATTAAAAA CCGGGC GTCGT GCCCGG TTTGAACCGCCTGAG TERM 137 134495 - 134511 + T 89 -11.5 -3.53811 | opp_overlap 134495 ACGGGGGATTAAAAA CCGGGCG TCG TGCCCGG TTTGAACCGCCTGAG YPTS_0124 135993 - 134530 - | pyridine nucleotide-disulphide oxidoreductase dimerisation region TERM 138 135468 - 135450 - G 80 -7.4 -4.56597 | CGCCTGGGCCAAAAA CTGCCACA GAT TCTGGCAG ATCGTCCCAATTAAA TERM 139 136033 - 136016 - R 100 -11.3 -5.80817 | opp_overlap 136014 CCTAACAGAAAAAAA GGTAGGC CGGA GCCTACC AAGTTACTTCCTATT YPTS_0125 136818 - 136087 - | glutaredoxin family protein TERM 140 136379 - 136369 - G 71 -8.2 -3.65693 | opp_overlap 136368 136365 136369 ATCAGATACTTCAAA CGGG TCG CCCG GTTTGTTTGGCTCGA TERM 141 136383 - 136400 + g 80 -4.2 -5.24129 | overlap 136365 ACGGGTCGCCCGGTT TGTTTG GCTCGA CAAACA TTTTTTCTACCACGC YPTS_0126 136965 - 137882 + | LysR family transcriptional regulator YPTS_0127 139265 - 137865 - | pyridine nucleotide-disulphide oxidoreductase dimerisation region YPTS_0128 139355 - 139450 + | hypothetical protein YPTS_0129 139483 - 140118 + | TetR family transcriptional regulator YPTS_0130 140131 - 140538 + | hypothetical protein TERM 142 140624 - 140642 + T 100 -10.3 -4.83243 | opp_overlap 140624, overlap 140609 CGTCTTGCCAACTAA GGGCAAC ATGTC GTTGCCC TTTCTTTTATCTGCG TERM 143 140642 - 140624 - T 81 -11 -3.33696 | opp_overlap 140609 140624 CGTCTTGCCAACTAA GGGCAACA TGT CGTTGCCC TTTCTTTTATCTGCG TERM 144 140670 - 140680 + T 76 -6.8 -4.57569 | GCGGTATGAATTATT CGTC AGT GACG TTTTTCCAGCAGTAC YPTS_0131 141775 - 140672 - | tRNA (uracil-5-)-methyltransferase TERM 145 142898 - 142886 - gH 73 -9.1 -3.46068 | overlap 142884 TTGCCAAGGGAAATA CTGGC ATG GCCAG TCAGCCAGATCGTGA YPTS_0132 142237 - 144129 + | TonB-dependent vitamin B12 receptor TERM 146 144226 - 144200 - gf 100 -18.2 -3.14132 | opp_overlap 144197 144194 CTGTCTGTCTATCAA GAGATTCGGCAA CTG TTGCCGAATCTC CACTATATATATGCT TERM 147 144690 - 144702 + GF 72 -7.7 -3.76775 | opp_overlap 144689 144686 CGGATACTATAGTAT TGGGT TGC ACCCA TTTCCCTCTATTAAC YPTS_0133 144074 - 144937 + | glutamate racemase TERM 148 147237 - 147200 - f 78 -5.7 -4.7629 | opp_overlap 147200 147194 147203, overlap 147203 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 149 147234 - 147203 - f 78 -7.4 -4.47888 | opp_overlap 147203 147200 147194, overlap 147200 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 150 148693 - 148675 - f 82 -10.3 -3.57798 | overlap 148688 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 151 149153 - 149127 - f 70 -9.4 -2.75844 | opp_overlap 149141 149149, overlap 149126 149129 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 152 149200 - 149189 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 153 150312 - 150322 + F 74 -6.8 -4.27316 | opp_overlap 150312 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 154 150829 - 150848 + F 100 -11.4 -5.80951 | opp_overlap 150829 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 155 150848 - 150829 - f 100 -9.2 -5.36441 | opp_overlap 150829 CTGCCAGATAAAAAA CCCTTCGC GAAA GCGAGGGG TTTTTTATTTTAAGT TERM 156 150932 - 150948 + F 73 -3.8 -5.02201 | TCGCTTTCTCTTTCC TCATTA TAATT TAATGA TTTTTATAATATTTT YPTS_0136 151802 - 152758 + | periplasmic binding protein/LacI transcriptional regulator TERM 157 152763 - 152787 + F 87 -8.4 -4.4195 | overlap 152766 TTGGTTATTGATTCA GATGGCGGGG CTTGC CCCCGCCTGC TTTTATCACCTGTAT TERM 158 152766 - 152784 + F 95 -13.1 -3.18044 | overlap 152763 GTTATTGATTCAGAT GGCGGGG CTTGC CCCCGCC TGCTTTTATCACCTG YPTS_0137 152844 - 154334 + | ABC transporter related YPTS_0138 154367 - 155365 + | inner-membrane translocator YPTS_0139 155365 - 156357 + | inner-membrane translocator YPTS_0140 157225 - 156344 - | LysR family transcriptional regulator TERM 159 157528 - 157514 - g 74 -10 -3.45087 | opp_overlap 157512 157514, overlap 157512 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA TERM 160 157514 - 157528 + G 73 -10 -3.38046 | opp_overlap 157514 157512, overlap 157512 AGTAACGGAAGAAGA GCAACG GTT CGTTGC TGTTTGCCGTGGCGA YPTS_0141 157344 - 157682 + | hypothetical protein TERM 161 158042 - 158057 + T 100 -11.8 -4.20516 | GTTAGTTGAGTATTA GGGGGC TTTG GCCCCC TTTGTTACATCAGGC YPTS_0142 159585 - 158062 - | Mg chelatase, subunit ChlI TERM 162 160093 - 160116 + H 100 -13.8 -5.7946 | opp_overlap 160093 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTTATTGGCAC TERM 163 160116 - 160093 - H 100 -13.8 -3.69069 | opp_overlap 160093 TTAATCTCAAGAGAA CCCCCGCACC GAAA GGTCCGGGGG TTTTTTTATTGGCAC YPTS_0143 160209 - 161855 + | acetolactate synthase, large subunit, biosynthetic type YPTS_0144 161852 - 162109 + | acetolactate synthase isozyme II small subunit TERM 164 162545 - 162531 - g 73 -10 -3.28924 | opp_overlap 162531 162530 TATCTGGGTGCAGAA GCCTTG GAG CAAGGC ATTGATGCTATGGTG YPTS_0145 162132 - 163058 + | branched-chain amino acid aminotransferase YPTS_0146 163369 - 165219 + | dihydroxy-acid dehydratase TERM 165 165248 - 165269 + G 71 -10.1 -2.87344 | TTCGCAACCCTTATC TGCTGCCCC CTGC GGGGCAGAA TATCTGCGGGCGATA YPTS_0147 165225 - 166769 + | threonine dehydratase, biosynthetic YPTS_0148 167364 - 166900 - | hypothetical protein TERM 166 167194 - 167218 + g 80 -9.4 -4.25056 | overlap 167195 TAGCCACCAGTTTAT TTTCCCTTTC TCAGT GAAAGGGAAG TTTCTTACTAAAATA TERM 167 167195 - 167217 + g 76 -10.7 -3.14552 | overlap 167194 AGCCACCAGTTTATT TTCCCTTTC TCAGT GAAAGGGAA GTTTCTTACTAAAAT YPTS_0149 167846 - 167382 - | hypothetical protein YPTS_0150 168387 - 167926 - | hypothetical protein YPTS_0151 169249 - 168371 - | hypothetical protein TERM 168 169103 - 169116 + g 75 -5.3 -4.74453 | GCTTGAAATATTATG CAGAT TAAA ATCTG TTTTTAACTGTGTTG TERM 169 169573 - 169539 - H 70 -7.9 -3.64831 | opp_overlap 169536, overlap 169536 169540 CTAATAATGACATAA GCCGGATAAGCTTAT TATTG ACACGCTTATCCGGT TAACACCGCCTAAAT TERM 170 169572 - 169540 - H 81 -11.4 -2.78176 | opp_overlap 169536, overlap 169539 169536 TAATAATGACATAAG CCGGATAAGCTTAT TATTG ACACGCTTATCCGG TTAACACCGCCTAAA YPTS_0152 169897 - 170106 + | hypothetical protein YPTS_0153 171042 - 170161 - | LysR family transcriptional regulator TERM 171 170191 - 170205 + g 100 -11.4 -5.08824 | opp_overlap 170179 170191 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 172 170205 - 170191 - G 82 -11.4 -3.41982 | opp_overlap 170191, overlap 170179 AAATGCATCAATCAA CGGCTC TTG GAGCCG TTTTTTCGGTACACA TERM 173 170934 - 170902 - G 81 -7.6 -4.58395 | GTTATCGCGTAAAAA CAGGGGCTGGCCGA TAGTC TCTTCCAGCCGCTG GATCTGGCGGGAAAG TERM 174 171099 - 171124 + H 72 -9.9 -2.87529 | gap 1, opp_overlap 171097, overlap 171098 TGCATAAGAAATCGG GTG-TATTGCAG AAA CTGCAATATCAC ATTGTTAATATATCA YPTS_0154 171338 - 172816 + | ketol-acid reductoisomerase TERM 175 172848 - 172870 + F 100 -9.8 -5.36441 | GTGATTTTATATTGA GCCTCCCTGT AAA AAAGGGGGGC TTTTTTATGTGCACC TERM 176 172932 - 172920 - f 75 -9.1 -3.58533 | GTAGAATTGCCGAAA CCCCA GGG TGGGG TAAGAATATTAGGTA YPTS_0155 172997 - 173197 + | colicin/pyocin immunity family protein YPTS_0156 173393 - 174841 + | S-type pyocin domain-containing protein TERM 177 175019 - 175009 - g 74 -6.8 -4.43909 | AGGCTAATAAAAGAA GCCA AGT TGGC TGAGGATGAAAAGGG YPTS_0157 174841 - 175104 + | hypothetical protein TERM 178 175126 - 175154 + F 82 -3.2 -5.47964 | gap 1 ATATGCTTCAGTTAA CGTCCAGTCAATG AGTG TATTG-TTGGGCG TTTTTCTTATTTTAT TERM 179 175255 - 175245 - f 91 -5.4 -5.60993 | GGTTTGATAAAAAAA GAAG TTT CTTC TCAGCTAGTTAACAC YPTS_0158 175620 - 175874 + | colicin immunity protein/pyocin immunity protein TERM 180 175894 - 175907 + F 72 -8.1 -3.81258 | opp_overlap 175888 AATATATAATCCGAA CCGTC TTAG GACGG TTTAAATGTTATTGA TERM 181 176293 - 176281 - g 83 -6.3 -4.946 | opp_overlap 176281 AGGAAATATTAAAAA TGGTA AAG TACCA TCTCCTAAAGAACGT YPTS_0159 176027 - 176446 + | HNH endonuclease YPTS_0160 176448 - 176702 + | colicin immunity protein/pyocin immunity protein TERM 182 176747 - 176709 - f 89 -6.9 -5.3472 | gap 1, opp_overlap 176716, overlap 176716 AAAAAATAAATAAAA TATATAATCCAAACCGCC TTCT GGTGGTTTGGATT-TGTA AATATAATTAGTAAC TERM 183 176741 - 176716 - f 100 -11.9 -3.90424 | opp_overlap 176716, overlap 176709 AAATAAAATATATAA TCCAAACCGCC TTCT GGTGGTTTGGA TTTGTAAATATAATT TERM 184 176716 - 176741 + F 100 -14.1 -3.96188 | opp_overlap 176716 176709 AAATAAAATATATAA TCCAAACCGCC TTCT GGTGGTTTGGA TTTGTAAATATAATT YPTS_0161 176855 - 177283 + | HNH endonuclease YPTS_0162 177280 - 177543 + | colicin immunity protein/pyocin immunity protein TERM 185 177960 - 177981 + F 74 -9.5 -3.25823 | ATGCTGCCCGCAGGG TGAGTCTCA GGGG TGAGGCTCA TTAATCTCCAGGCGC YPTS_0163 178101 - 178472 + | putative phage antitermination protein Q YPTS_0164 178753 - 178875 + | hypothetical protein YPTS_0165 179085 - 179420 + | hypothetical protein YPTS_0166 179362 - 179619 + | hypothetical protein YPTS_0167 180497 - 179679 - | Pili assembly chaperone, N-terminal TERM 186 180146 - 180117 - GT 80 -11.5 -2.6062 | gap 1, opp_overlap 180120, overlap 180116 180114 180120 CCCACCAGATAAGAT CAACCGCAGGCTAC GCT GT-GCCTGAGGTTG TAACCGGAATACCGG YPTS_0168 181830 - 180463 - | hypothetical protein TERM 187 180509 - 180527 + gr 72 -5.9 -4.33004 | GCATTCACTGCTCCG GCGGTCA CCGTT TGCCCGC TTATTTTGCTTAACT TERM 188 181082 - 181101 + gr 83 -10.7 -3.54129 | TCAGTACCCTCAATC GGGCCAG TAATTC CTGGCCC TTTAAACGCGATATA YPTS_0169 184498 - 181847 - | fimbrial biogenesis outer membrane usher protein TERM 189 183480 - 183468 - G 71 -6.3 -4.15044 | opp_overlap 183478, overlap 183478 CTGGTGCTGAACAAA TCGTT AAT AACGA ACGGGCCAGGAGCGA YPTS_0170 185257 - 184526 - | Pili assembly chaperone, N-terminal TERM 190 185309 - 185281 - R 86 -12.5 -2.52676 | opp_overlap 185278 185273 TACCTTCTGAAGTCA TTTACCGAGTGGT TAT ACCACCCGGTAAT AAATACATTTATTAC YPTS_0171 185851 - 185321 - | fimbrial protein TERM 191 185932 - 185878 - R 82 -10.2 -3.71794 | opp_overlap 185887, overlap 185887 ATGTAATCATTGAAA TGGAGTTAATTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAATTTGATTGA GTGAATATATATTCC TERM 192 185887 - 185923 + r 100 -24.1 -3.93556 | opp_overlap 185878 185887 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 193 185923 - 185887 - R 100 -24.1 -3.11732 | opp_overlap 185887, overlap 185878 TTGAAATGGAGTTAA TTCCCCATTCGGATTTT AAT AAAATCCGAATGGGGAA TTTGATTGAGTGAAT TERM 194 185973 - 186008 + r 100 -6.4 -6.06529 | gap 1, opp_overlap 185982, overlap 185974 GTTTTTATTATTCGT C-TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGATG TTTTTTTTCTGTGTA TERM 195 185974 - 186006 + r 100 -10.1 -4.65669 | opp_overlap 185982, overlap 185973 TTTTTATTATTCGTC TCAAAATACCTTTTA ATT TCAAAGGTGTTTTGA TGTTTTTTTTCTGTG YPTS_0172 187434 - 186643 - | glutamine cyclotransferase TERM 196 187631 - 187672 + r 71 -9.6 -3.06796 | gap 1, opp_overlap 187632 187634 187639, overlap 187639 GTATGACGAGTATAA ACATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGGA TTAGCTGCGGTACAA TERM 197 187671 - 187632 - R 100 -13.1 -4.00038 | gap 1, opp_overlap 187631 187639, overlap 187634 187639 TATGACGAGTATAAA CATGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCAGG ATTAGCTGCGGTACA TERM 198 187669 - 187634 - R 100 -14.3 -3.58864 | gap 1, opp_overlap 187631 187639, overlap 187632 187639 TGACGAGTATAAACA TGAAATACGCCAC-CT TTTAT AGCGTGGCGTATTTCA GGATTAGCTGCGGTA TERM 199 187639 - 187664 + r 73 -8.4 -3.61268 | gap 1, opp_overlap 187639 187634 187632, overlap 187631 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG TERM 200 187664 - 187639 - R 77 -8.4 -4.05181 | gap 1, opp_overlap 187631 187639, overlap 187634 187632 AGTATAAACATGAAA TACGCCAC-CT TTTAT AGCGTGGCGTA TTTCAGGATTAGCTG YPTS_0173 187969 - 187673 - | PpiC-type peptidyl-prolyl cis-trans isomerase YPTS_0174 188141 - 187974 - | hypothetical protein TERM 201 189046 - 189061 + G 77 -2.6 -5.26316 | opp_overlap 189057 GCCAACAACCCACAT GTTTTT GAAA AGAAAC TTTTTTCTGAACTGA TERM 202 190024 - 190040 + G 78 -7.9 -4.47328 | TACGGCGAGTTGATT CGGCCAG AAC CTAGCCG TTTTCTGATGGAGTT TERM 203 190140 - 190123 - g 100 -11.3 -4.66609 | opp_overlap 190122 190121 GAGCGTATGCAAAAA GGCCAGA GTCA TCTGGCC AATCTTCGTGCTCAG YPTS_0175 188158 - 190179 + | ATP-dependent DNA helicase Rep TERM 204 190259 - 190236 - T 84 -11.1 -3.69702 | overlap 190239 CAGTAGTGAAGATAA TAACGGGCA GTCTAT TGCCCGTTA GCCATGCATTAAGGC TERM 205 190256 - 190239 - T 77 -8.4 -3.97511 | overlap 190236 TAGTGAAGATAATAA CGGGCA GTCTAT TGCCCG TTAGCCATGCATTAA YPTS_0176 191843 - 190347 - | Ppx/GppA phosphatase YPTS_0177 193133 - 191847 - | DEAD/DEAH box helicase domain-containing protein TERM 206 192385 - 192403 + g 85 -3 -5.59655 | opp_overlap 192387, overlap 192386 192387 CATTCTTCTTCAATT AACGTCTG TAA CAGACGCA TTTTTTCTTCATTTG TERM 207 192401 - 192387 - G 73 -10 -3.33696 | opp_overlap 192386 192385 192387 TTCTTCTTCAATTAA CGTCTG TAA CAGACG CATTTTTTCTTCATT TERM 208 192444 - 192454 + g 76 -2.4 -5.25803 | CAGCTCTTCTTTGAT GCGG TGA CCGG TTTTTTGTAACGGTT YPTS_0178 193252 - 193578 + | thioredoxin TERM 209 194361 - 194383 + G 71 -6.9 -4.28369 | GTTGCCGGTAAGATT CGTCCGCCT AAAGA AGGCGAGCG TTATTTTGCATTGTT TERM 210 194646 - 194664 + G 74 -6.8 -4.35461 | overlap 194648 GCGACCAGCATTGCT TACAATCA CCC TGATTGTG TTTTGATGGTATTGC YPTS_0179 194058 - 195317 + | transcription termination factor Rho TERM 211 195487 - 195469 - f 100 -11.7 -4.23892 | opp_overlap 195469 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTTTGGA TERM 212 195469 - 195487 + F 100 -11.7 -5.46698 | opp_overlap 195469 TTGAATCAGTCAAAA CGCCACG CCAGT CGTGGCG TTTTTTACTTTTGGA YPTS_0180 195867 - 196949 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YPTS_0181 196970 - 198046 + | lipopolysaccharide biosynthesis protein YPTS_0182 198395 - 199525 + | UDP-N-acetylglucosamine 2-epimerase TERM 213 199569 - 199583 + G 76 -7 -4.42238 | overlap 199567 TGGGTATATTGGTCT GCCGAC CGC GGCGGC TTTTGCTTCGCGTAA YPTS_0183 199522 - 200784 + | nucleotide sugar dehydrogenase YPTS_0184 200781 - 201848 + | dTDP-glucose 4,6-dehydratase TERM 214 202524 - 202506 - g 82 -10.2 -3.93061 | opp_overlap 202513 202515 202515 AGTCCAAAACTGAAA GCTGTCGC CGC GCGTCAGC AGGGCGCGACTGTTT YPTS_0185 202092 - 203024 + | glucose-1-phosphate thymidylyltransferase YPTS_0186 203002 - 203739 + | TDP-D-fucosamine acetyltransferase YPTS_0187 203741 - 204871 + | TDP-4-keto-6-deoxy-D-glucose transaminase TERM 215 204907 - 204936 + G 88 -13.7 -3.20227 | overlap 204906 CGATTTGGACTGCCT GCTCTACGCTAAT CAAG ATTGGCGTAGGGC TATTGGTGGTTAAAC YPTS_0188 204873 - 206129 + | polysaccharide biosynthesis protein TERM 216 206368 - 206393 + G 80 -7.5 -4.64861 | gap 1, overlap 206379 GAGGCGGTTATTGCC CGTGCACAGGCG GAT CGCA-GTGCGCG TTTCTTTTGGCACGG YPTS_0189 206152 - 207237 + | 4-alpha-L-fucosyltransferase YPTS_0190 207234 - 208598 + | WzyE family protein TERM 217 209300 - 209314 + G 76 -7.2 -4.4078 | overlap 209296 CGCATTCGTCGTCAG CTTAAG CTG CTTAAG TTTGTTGGTTATTAT YPTS_0191 208607 - 209347 + | WecB/TagA/CpsF family glycosyl transferase TERM 218 210472 - 210484 + G 90 -10.5 -4.41348 | GCTTCGATAACCTGA CCGCC CAT GGCGG TTTCTTTGCCGGGGG YPTS_0192 209901 - 211292 + | amino acid permease-associated region TERM 219 211813 - 211786 - T 73 -7.2 -4.08706 | TTCGCACCACACAAA CATGTAGATATT TATT AATATTTACATG GACATAGGTCGAGAG TERM 220 211945 - 211959 + T 100 -8.5 -5.78622 | opp_overlap 211945 CAATTTCAGAAGAAA CCCCG CAATA CGGGG TTTTTTTTCGCCTGA TERM 221 211959 - 211945 - T 88 -9.2 -4.33248 | opp_overlap 211945 CAATTTCAGAAGAAA CCCCGC AAT ACGGGG TTTTTTTTCGCCTGA TERM 222 212641 - 212662 + T 100 -10.2 -6.38039 | opp_overlap 212643 CCTGAAAATTTTAGA CACTTGCC CTTTTC GGCAAGTG TTTTTTTTTTGGGTG YPTS_0193 213975 - 212755 - | HemY protein YPTS_0194 215102 - 213978 - | protein of unknown function DUF513 hemX TERM 223 214350 - 214360 + g 71 -6.8 -4.28762 | opp_overlap 214350 GAAATCAGACATAAA GCTG CGC CAGC TTTTACTCAGATTCT TERM 224 214360 - 214350 - G 71 -6.8 -4.19024 | opp_overlap 214350 GAAATCAGACATAAA GCTG CGC CAGC TTTTACTCAGATTCT YPTS_0195 215882 - 215133 - | uroporphyrinogen III synthase HEM4 TERM 225 215366 - 215348 - G 78 -11 -3.43203 | CCACCAGAATATCAA CACCGGCA CGT TGCCAGTG AGCACTTTGTTCGCT YPTS_0196 216820 - 215879 - | porphobilinogen deaminase YPTS_0197 217314 - 219866 + | putative adenylate cyclase TERM 226 219883 - 219911 + T 86 -12 -2.94099 | opp_overlap 219878 219883, overlap 219885 ATGCTGACAAGCGAA TAGCCAATAAAA ACAGG TTTTATTGGCTA TCTCTAATAAGAAAG TERM 227 219911 - 219883 - T 86 -12 -3.23452 | opp_overlap 219883 219885, overlap 219878 ATGCTGACAAGCGAA TAGCCAATAAAA ACAGG TTTTATTGGCTA TCTCTAATAAGAAAG TERM 228 219885 - 219909 + T 76 -10.2 -3.02471 | opp_overlap 219883 219878, overlap 219883 GCTGACAAGCGAATA GCCAATAAAA ACAGG TTTTATTGGC TATCTCTAATAAGAA YPTS_0198 220225 - 219902 - | hypothetical protein TERM 229 220412 - 220391 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPTS_0199 221594 - 220386 - | transposase mutator type YPTS_0200 222781 - 221642 - | pentapeptide repeat-containing protein TERM 230 222255 - 222267 + g 73 -4.9 -4.77778 | ACATCAAGTACTTCT TTGAA TTT TTCAA TTTTATCTATTTCTT TERM 231 222929 - 222964 + r 100 -10.6 -4.2828 | gap 1, opp_overlap 222934 222940, overlap 222936 TTTAGCGTGTTCCAA TTG-AATACCAACCGAG TTG CTCGGCTGGTATTGCGA TTTTACTCACTGAAA TERM 232 222958 - 222934 - R 100 -15.1 -3.17075 | opp_overlap 222929 222936, overlap 222940 CGTGTTCCAATTGAA TACCAACCGAG TTG CTCGGCTGGTA TTGCGATTTTACTCA TERM 233 222936 - 222956 + r 79 -11.1 -3.15768 | opp_overlap 222934 222940, overlap 222929 TGTTCCAATTGAATA CCAACCGAG TTG CTCGGCTGG TATTGCGATTTTACT TERM 234 222952 - 222940 - R 71 -9.1 -3.39529 | opp_overlap 222936 222929, overlap 222934 CCAATTGAATACCAA CCGAG TTG CTCGG CTGGTATTGCGATTT YPTS_0201 223290 - 222967 - | iron donor protein CyaY YPTS_0202 223442 - 223642 + | hypothetical protein TERM 235 224235 - 224263 + G 75 -11.7 -2.64616 | overlap 224234 AACCTATATTTTACG CGCCGCAGAGCAT ACG GTGCTGTGTGGCG TGGTGTCGATGGGCA YPTS_0203 223810 - 224634 + | diaminopimelate epimerase YPTS_0204 224699 - 225403 + | hypothetical protein TERM 236 225772 - 225750 - g 73 -2.1 -5.02074 | CCACCTGCCAAAAAA TATTGATGT TGATG AAATCAATA AACTGCTGAGTATTG YPTS_0205 225400 - 226311 + | tyrosine recombinase XerC TERM 237 226395 - 226420 + G 77 -4 -5.0133 | gap 1, overlap 226395 226396 226398 AATCGGCCAGTGATC G-CGCGGACTG AACAG CAGTCTGTGGC TTTTTTACAACAGTA YPTS_0206 226311 - 227027 + | HAD family hydrolase TERM 238 227087 - 227076 - f 72 -7.2 -3.91716 | opp_overlap 227075 GGAGGGGGCAAACAA CCGG AGAC CCGG CATTGTGGCTATTTT TERM 239 227193 - 227165 - g 74 -4.3 -4.86621 | opp_overlap 227177, overlap 227168 227170 AGCCTGAATGAAAAA CAACGTGACGCCG TGG CCGCGCCGCGCGG CAACTTGTTGGTACT TERM 240 227190 - 227168 - g 77 -6.8 -4.53777 | opp_overlap 227177, overlap 227165 227170 CTGAATGAAAAACAA CGTGACGCCG TGG CCGCGCCGCG CGGCAACTTGTTGGT TERM 241 227177 - 227197 + G 88 -12.5 -3.75024 | opp_overlap 227168 227165 227170 AAACAACGTGACGCC GTGGCCGCG CCG CGCGGCAAC TTGTTGGTACTGGCC TERM 242 227592 - 227582 - g 71 -8.2 -3.66995 | GGCAAAAAAGACGAA GGGC TGC GCCC ACAACATATTGAGAG YPTS_0207 227126 - 229288 + | DNA helicase II TERM 243 229301 - 229327 + T 76 -9.4 -3.40971 | overlap 229300 TAATCTGATATTTGT GGTGGTTGCAGT GTC AGTGCGGCCACC TATCTATTTTTATTT YPTS_0208 230067 - 229402 - | TetR family transcriptional regulator TERM 244 230734 - 230745 + G 72 -5.8 -4.4767 | TAATGCTATGGCTAT CGCT TTCG AGCG TTTTATGGTGAGTCG YPTS_0209 230495 - 231727 + | hypothetical protein YPTS_0211 232724 - 232524 - | hypothetical protein YPTS_0210 231753 - 232583 + | hypothetical protein TERM 245 232667 - 232688 + gT 100 -7.3 -6.13 | opp_overlap 232667 GCAGGATACGCAAAA CCGAAGTTG TTAC TGACTTCGG TTTTTTTTTGGGTCT TERM 246 232688 - 232667 - GT 70 -5.9 -4.24948 | opp_overlap 232667 GCAGGATACGCAAAA CCGAAGT TGTTACTG ACTTCGG TTTTTTTTTGGGTCT YPTS_0212 233051 - 232932 - | hypothetical protein TERM 247 233409 - 233423 + G 81 -3.5 -5.42259 | gap 1, overlap 233371 AGAGTTGGACGATAT CGAGGC TTCG GCC-CG TTTTTTTGAAGATGA YPTS_0213 233233 - 234183 + | magnesium and cobalt transport protein CorA TERM 248 234222 - 234266 + T 100 -8.8 -5.42862 | gap 2, opp_overlap 234222 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGG ACTAACC CCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT TERM 249 234266 - 234222 - T 100 -11.7 -5.5604 | gap 2, opp_overlap 234222 GCAACGAATAAAAAA GCCCGGTCACTC-A-ATTGGA CTAAC CCCAATATTGAGTAACCGGGC TTTTTTTCGGCATCT YPTS_0214 235171 - 234281 - | transporter DMT superfamily protein TERM 250 234945 - 234931 - G 83 -9.2 -4.41494 | overlap 234932 TACTGGCAATCAAAA CGGCGG TCA CCGCCA GTAACAATAGGCGCT TERM 251 234944 - 234932 - G 73 -10.5 -3.24414 | overlap 234931 ACTGGCAATCAAAAC GGCGG TCA CCGCC AGTAACAATAGGCGC YPTS_0215 235728 - 235258 - | thioesterase superfamily protein YPTS_0216 235950 - 236828 + | phospholipase A1 TERM 252 236852 - 236884 + F 95 -14.2 -2.86164 | gap 1, opp_overlap 236859 236861 GGCGTTATCACAGTT TCAGACACAGGCCGG TCAG CCGGCCTGTG-CAGA TCTAATAGTTGGGGA TERM 253 236878 - 236859 - f 100 -15 -2.89191 | opp_overlap 236852, overlap 236861 TCACAGTTTCAGACA CAGGCCGG TCAG CCGGCCTG TGCAGATCTAATAGT TERM 254 236876 - 236861 - f 86 -11.8 -2.99649 | opp_overlap 236852, overlap 236859 ACAGTTTCAGACACA GGCCGG TCAG CCGGCC TGTGCAGATCTAATA YPTS_0217 236944 - 238737 + | ATP-dependent DNA helicase RecQ YPTS_0218 238844 - 239464 + | homoserine/threonine efflux pump TERM 255 239460 - 239511 + T 84 -10.9 -3.66216 | gap 1, opp_overlap 239477, overlap 239460 239499 AACTGATATTGTCCC G-CTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGGC TCTTTATACTTTGCG TERM 256 239460 - 239510 + T 77 -11.1 -2.79007 | opp_overlap 239477, overlap 239460 239499 AACTGATATTGTCCC GCTAACGGGTTAGCCAACGGGGT ATTTA ACCCGGTTGGCTAGCCTGACAGG CTCTTTATACTTTGC YPTS_0219 240135 - 239515 - | lysine exporter protein LysE/YggA TERM 257 241295 - 241308 + G 73 -5.2 -4.56775 | overlap 241286 GTGCCGAGGCGCTTA GCGC CATATT GCGC TTTTTCGCGCAACAT YPTS_0220 240349 - 241344 + | alpha/beta hydrolase fold protein YPTS_0221 241379 - 242188 + | Cof-like hydrolase TERM 258 242226 - 242244 + F 100 -12.4 -4.06562 | TGATGCTGTGGAGTA GGGTGGCC TTT GGTCACCC TTTCTCCTTGGCGTT TERM 259 242647 - 242636 - g 74 -3 -5.04908 | AAAATAAAAAAATAA CAAT AAAT ATTG CTGAGAAGAAATTTA TERM 260 243649 - 243630 - g 83 -4.4 -5.41143 | gap 1 CATGGGTGAAAAAAA TCACTATCA GAA TG-TAGTGA GTCACGTTGAATAAT YPTS_0222 242464 - 243663 + | hypothetical protein YPTS_0223 244852 - 243737 - | glycerophosphoryl diester phosphodiesterase YPTS_0224 245477 - 247132 + | glycerol-3-phosphate dehydrogenase, anaerobic, A subunit YPTS_0225 247122 - 248396 + | glycerol-3-phosphate dehydrogenase, anaerobic, B subunit YPTS_0226 248441 - 249688 + | glycerol-3-phosphate dehydrogenase, anaerobic, C subunit TERM 261 249821 - 249797 - T 100 -13.6 -4.72631 | opp_overlap 249801 249818 AGTAAGTCAATAAAA CAGAGCGCGA GTGAG CCGCGCTCTG CTGGGACAGATTATT YPTS_0227 250359 - 249832 - | putative lipoprotein YPTS_0228 251157 - 250489 - | hypothetical protein YPTS_0229 251441 - 251695 + | SirA family protein YPTS_0230 254126 - 251760 - | heavy metal translocating P-type ATPase YPTS_0231 255166 - 254540 - | YhhN family protein YPTS_0232 255456 - 255776 + | hypothetical protein TERM 262 256081 - 256069 - g 79 -3.3 -5.252 | TATTGGCAGAAAAAA CAGCA GGA TGCAG AAAATGATCGCGCAC YPTS_0233 255988 - 256407 + | hypothetical protein YPTS_0234 256856 - 256584 - | hypothetical protein TERM 263 256826 - 256815 - G 76 -2.2 -5.32882 | overlap 256816 256818 CAGCAGTATAAAAAA CCAG ACGC CTAG CATCAGTAACCGGCC YPTS_0235 257508 - 256846 - | methyltransferase TERM 264 257821 - 257799 - g 71 -6.4 -4.24002 | TCGCAAATGGCAAAA GAAAAAAAAC GTG GATTTTTTTC CTGGCTGGGTCTTGG TERM 265 257871 - 257853 - g 88 -12.4 -3.70773 | overlap 257864 CGTCAGAGTGAAGAA CCAGCAGC AGA GCCGCTGG CGACTGAAAAAGAAG TERM 266 259187 - 259167 - g 77 -3.1 -5.26875 | opp_overlap 259181, overlap 259168 CGGGTAATGAAAAAA CTGGACGGC GAC GCCCCCCAT GAGGTTATGCTGACA YPTS_0236 257790 - 259442 + | signal recognition particle-docking protein FtsY YPTS_0237 259448 - 260116 + | type II secretory pathway family protein YPTS_0238 260106 - 261059 + | protein insertion ABC transporter, inner membrane subunit FtsX TERM 267 261808 - 261794 - g 73 -7.8 -4.09739 | opp_overlap 261799, overlap 261799 TCAACCTGCGTAAAA CCAAGC AGC GCCTGG GCTGGTTTAATCAGG YPTS_0239 261370 - 262227 + | RNA polymerase, sigma 32 subunit, RpoH TERM 268 262270 - 262290 + T 100 -11.2 -4.77757 | opp_overlap 262270 CGGCACGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTTTTTGGCA TERM 269 262290 - 262270 - T 93 -11.2 -4.11183 | opp_overlap 262270 CGGCACGATAAAGAA GGGCGATA TTGAT TATCGCCC TTTTGCTTTTTGGCA YPTS_0240 262826 - 262434 - | GCN5-related N-acetyltransferase TERM 270 262728 - 262706 - G 73 -4.8 -4.73388 | opp_overlap 262727 AACGTGCAGCAAAAA GTGGTCTACC CTC AGTAATCCAC TGTTGCCAGGCAGCA TERM 271 263615 - 263596 - g 85 -12.2 -3.39717 | ATTTATGAAGATGAA GGGGTGAT AATG ATCACCCC TGCTGCTACAAACGC TERM 272 264253 - 264242 - g 73 -7.2 -4.17023 | overlap 264250 264251 CTAACGATCTGAAAA CCGG CAAA CCGG TTGAGACCGTGATGG YPTS_0241 263248 - 264363 + | extracellular ligand-binding receptor TERM 273 264453 - 264473 + F 100 -10.4 -4.70659 | CTTCTATCAACTGCA TCCCCTCG TATTC CGGGGGGA TTTTTCCCTCTACAG YPTS_0242 264544 - 265470 + | inner-membrane translocator TERM 274 266423 - 266402 - g 71 -8.7 -3.71672 | CCCGACCAAAATTAA GCTGACGGC ATTT ACCATCAGC GCGGCCTTTGCAGGT YPTS_0243 265467 - 266753 + | inner-membrane translocator YPTS_0244 266750 - 267517 + | ABC transporter related YPTS_0245 267562 - 268263 + | ABC transporter related YPTS_0246 268491 - 268952 + | hypothetical protein YPTS_0247 270173 - 269067 - | hypothetical protein YPTS_0248 270804 - 270286 - | hypothetical protein TERM 275 270343 - 270357 + g 78 -9.2 -4.13728 | TTTCCCTGCAGTATT GTCCCC TGC GGGGGC TTTTGCGGATATATG YPTS_0249 271513 - 270866 - | hypothetical protein YPTS_0250 272171 - 271485 - | hypothetical protein TERM 276 272018 - 272032 + gr 72 -9.2 -3.22951 | opp_overlap 272018, overlap 272016 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGTA TERM 277 272032 - 272018 - GR 71 -7 -4.07868 | opp_overlap 272018 272016 TGATATCCAGATAAA GCGGTG TAT CGCCGC TGTTATACACCTGTA YPTS_0251 274522 - 272189 - | hypothetical protein TERM 278 273392 - 273426 + g 85 -4.8 -5.49809 | overlap 273394 TTGTACGCTTTCTAT CACCCTGCTGCGTCCA AAT TGGACTAAACGGGGCG TTTTTTTACCCTTTG TERM 279 274751 - 274723 - R 79 -11.2 -2.93207 | gap 1, opp_overlap 274723, overlap 274725 274727 AATATGACGGATATA TACAGCCA-GGAA ATAA TTCCATGGCTGTA TTCATTAAATTAACA TERM 280 274723 - 274751 + r 81 -11.2 -3.4052 | gap 1, opp_overlap 274723 274725 274727 AATATGACGGATATA TACAGCCA-GGAA ATAA TTCCATGGCTGTA TTCATTAAATTAACA TERM 281 274749 - 274725 - R 71 -9.4 -3.01416 | gap 1, opp_overlap 274723, overlap 274723 274727 TATGACGGATATATA CAGCCA-GGAA ATAA TTCCATGGCTG TATTCATTAAATTAA YPTS_0252 275277 - 274789 - | hypothetical protein TERM 282 275453 - 275466 + H 70 -5.3 -4.55689 | TAACGTTATTTCAAG TGGTA ATTA TACCA TTTTGTCTGAATGAT TERM 283 276581 - 276570 - H 84 -3.6 -5.5353 | GATATGAATAAAAAA GGCG ATTT CACC TATTTTGGCCGTAAA YPTS_0255 277452 - 278339 + | binding-protein-dependent transport systems inner membrane component TERM 284 278564 - 278574 + G 75 -5.4 -4.81863 | CCTTTCGGGTTGATG CTGT TGA ACAG TTTTGTTATGGCTTT TERM 285 279113 - 279128 + G 71 -6.8 -4.25256 | ATTTTGACTTTAATT CCACCG GTCG TGGTGG TTCTTTTGATGCAGC YPTS_0256 278336 - 279181 + | binding-protein-dependent transport systems inner membrane component TERM 286 279844 - 279818 - g 75 -7.9 -4.2461 | opp_overlap 279841 ATTGTGATGAACAAA GGGGTTGCCGA GCAAA TCGGTACCCCC AGCGAGGTTTATAAA TERM 287 280180 - 280170 - g 71 -6.8 -4.25056 | opp_overlap 280169, overlap 280171 TATCCCATGAAGAAA TGCC AGT GGCA GGCAGTACATTGCAT YPTS_0257 279188 - 280261 + | ABC transporter related YPTS_0258 280258 - 281007 + | glycerophosphoryl diester phosphodiesterase TERM 288 281083 - 281049 - f 85 -5.7 -5.18726 | CCGCCATAATAAAAA CAGGTCAGCCATT CTTACATTT ACGGGCTGACCTG GCCCGGCCTGACAGG YPTS_0259 281108 - 282064 + | auxin efflux carrier TERM 289 282411 - 282391 - g 74 -11.3 -2.95306 | AAATAAGACATTATA CTTTGAATG CGG CATTCAAAG AGGCGGCCTTGAGTT TERM 290 282823 - 282808 - g 80 -4.8 -5.14563 | opp_overlap 282808 CTGGTGAGCAAAAAA TTATCA TTCC TGATAA TGTCTTGCCTACACT YPTS_0260 282201 - 282869 + | hypothetical protein TERM 291 283037 - 283056 + G 80 -9.3 -4.2803 | TCCTGATGCAGAGGG CCTTGCC AGTCTC GGCAAGG TTTTAAATTGCCCTG TERM 292 283652 - 283669 + G 80 -7.1 -4.57474 | TGCGGAATTACCCTC TTTTCCA AGTT TGGAAAA TTTTGTCTCACTTAA YPTS_0261 282882 - 284084 + | hypothetical protein TERM 293 284404 - 284416 + GT 73 -3.3 -4.89729 | overlap 284394 GATGCGTGTCGGGCT GGCCG CAC TGGTC TTTTTGCCTTTTCTG YPTS_0263 286031 - 285078 - | LysR family transcriptional regulator YPTS_0262 284291 - 285190 + | carboxylate/amino acid/amine transporter YPTS_0264 286122 - 288413 + | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase TERM 294 288448 - 288463 + T 100 -11.8 -5.52096 | GTAGTGGGGCTTTTG GGGCGC TTTC GCGCCC TTTTTTATTGCGTTT YPTS_0265 289340 - 288468 - | dienelactone hydrolase TERM 295 288722 - 288707 - G 71 -10.4 -2.88544 | CTTTACCTCCATATA GCCCCA ACAC TGGGGC GCAGAGATCGATAGC TERM 296 288956 - 288944 - G 75 -7.7 -4.29738 | opp_overlap 288943 CGAGATCCACCAAAA CCTGA CGA TCAGG GACTTTTTTTACCAG TERM 297 289209 - 289228 + g 70 -7.8 -3.87373 | GGGGATCGTTGTTTC CCCACAGT GAAT ACCGTGGG TTTGTAACGAATGTA YPTS_0266 289768 - 290529 + | uridine phosphorylase TERM 298 290563 - 290582 + F 100 -11.4 -4.36862 | TAGAGGGTTTGTTCT CGGGTCAG TTTA CTGGCCCG TTCTTTATTTCATCT YPTS_0267 290650 - 291495 + | protein tyrosine/serine phosphatase TERM 299 291911 - 291930 + G 93 -6.4 -5.5112 | overlap 291913 GTATCCTTACGATCT GCTACCGT TTAT ACGGTATC TTTTTTGTTCGTAAG TERM 300 291913 - 291928 + G 78 -7.6 -4.39002 | overlap 291911 ATCCTTACGATCTGC TACCGT TTAT ACGGTA TCTTTTTTGTTCGTA TERM 301 292682 - 292695 + G 75 -8.1 -4.15222 | CTGAAATTCAATTCC CTGCG GTTA CGCAG TTTATTCACGGCGGT TERM 302 293398 - 293414 + G 81 -12.3 -3.0682 | GCCACGATTATCCTG CGCTTGG CGA CCAAGCG TGTGTATATGCTGAC YPTS_0268 291859 - 293670 + | carbon starvation protein CstA TERM 303 293699 - 293726 + F 100 -13.6 -5.5074 | opp_overlap 293703 TTGTGCTAATTTGTT TAAACGGCTGGA ATCT TCTAGCCGTTTA TTTTTTGTTAAGTTA TERM 304 294530 - 294543 + G 73 -2.3 -5.07107 | overlap 294540 TCTTCGAGCGTTGGG GGTTC TTTG GGGCC TTTTTTGGCCGTTTC YPTS_0269 294190 - 294720 + | hypothetical protein YPTS_0270 294928 - 296433 + | hypothetical protein TERM 305 296442 - 296466 + F 72 -7.7 -3.75015 | AGAGTAATTTAATTG GCACCGCAACC AGG GGGTGTGGGGC TTTCATCGGAGTTCT YPTS_0271 296525 - 297280 + | ubiquinone/menaquinone biosynthesis methyltransferase YPTS_0272 297294 - 297944 + | sterol-binding domain-containing protein YPTS_0273 297944 - 299575 + | 2-polyprenylphenol 6-hydroxylase YPTS_0274 299755 - 300021 + | twin arginine-targeting protein translocase YPTS_0275 300025 - 300687 + | twin-arginine translocation protein, TatB subunit TERM 306 300763 - 300777 + G 83 -6.4 -4.98436 | opp_overlap 300763 300764, overlap 300764 TACTGAATTGTATAA TCACCA TTT TGGTGG TTTTTCTGGTATTGG YPTS_0276 300690 - 301466 + | Sec-independent protein translocase, TatC subunit TERM 307 301487 - 301502 + F 100 -11.8 -4.45168 | TGTGTTGATATTTAG CCGCCC TTCT GGGCGG TTTCTGTTTTGGAAC TERM 308 302279 - 302299 + G 79 -10.3 -3.75153 | opp_overlap 302279 302278 302277 AAACTGATGAAAACG CCCGCCGGG TTT TCCGGCTGG TTTGAGTTAGGAGAA YPTS_0277 301522 - 302304 + | TatD-related deoxyribonuclease YPTS_0278 302319 - 303341 + | delta-aminolevulinic acid dehydratase TERM 309 303363 - 303401 + T 73 -8.9 -3.56273 | opp_overlap 303367 303375, overlap 303364 303367 ATAACTAAGAGTCAC AGCATTCAGATAGGCAC TAACT GCGCCTATCTGAATGAA TTCTATAATGATGAG TERM 310 303364 - 303400 + T 88 -12.4 -2.73443 | opp_overlap 303367 303375, overlap 303363 303367 TAACTAAGAGTCACA GCATTCAGATAGGCAC TAACT GCGCCTATCTGAATGA ATTCTATAATGATGA TERM 311 303367 - 303397 + T 88 -12.7 -2.64051 | opp_overlap 303367 303375, overlap 303364 303363 CTAAGAGTCACAGCA TTCAGATAGGCAC TAACT GCGCCTATCTGAA TGAATTCTATAATGA TERM 312 303397 - 303367 - T 100 -14.9 -2.66787 | opp_overlap 303367 303364 303363, overlap 303375 CTAAGAGTCACAGCA TTCAGATAGGCAC TAACT GCGCCTATCTGAA TGAATTCTATAATGA YPTS_0279 303939 - 303451 - | transcriptional acivator RfaH YPTS_0280 304163 - 305683 + | UbiD family decarboxylase YPTS_0281 305738 - 306439 + | oxidoreductase FAD/NAD(P)-binding subunit TERM 313 306468 - 306452 - T 82 -5.7 -4.97402 | overlap 306453 TAAAAGCGATAAAAA GCCCGCC TCT GACCGGC GGGGAAATAGCAACT TERM 314 306471 - 306453 - T 73 -8.8 -3.56814 | overlap 306452 AAAAGCGATAAAAAG CCCGCC TCTGACC GGCGGG GAAATAGCAACTAAA YPTS_0282 307762 - 306599 - | acetyl-CoA C-acyltransferase FadA TERM 315 307719 - 307701 - G 78 -8 -4.33274 | CGTACATGACGAAAA GCCCCCCC TTT GGAGCGGC CCATCGGTGTACGCA YPTS_0283 309963 - 307774 - | fatty oxidation complex, alpha subunit FadB TERM 316 307815 - 307803 - G 71 -9.1 -3.50335 | TGGTAGAAACATCAA GCAGC GCT GCTGC CACAGGATAATAACT TERM 317 308500 - 308513 + g 73 -8.1 -4.05033 | opp_overlap 308499 308496 ATCATTGACAACAAT TGGGG TTTT CCCCA TTTGTGTAGCGTAAG TERM 318 309701 - 309684 - G 77 -8.5 -4.1899 | opp_overlap 309695 309696, overlap 309699 CCAGTCGATTGAAAA TGGTGTT GGCG AACACCA GCCACTGGTGCAGTT TERM 319 310244 - 310218 - H 79 -8 -4.31835 | opp_overlap 310219, overlap 310219 AATTTGTAGAATAAA CGTCATCGAAAC ATG GTTTCGGTGACT ATGATAAGATAAAAA TERM 320 310219 - 310243 + H 93 -13.7 -2.79796 | opp_overlap 310218 310219 ATTTGTAGAATAAAC GTCATCGAAAC ATG GTTTCGGTGAC TATGATAAGATAAAA TERM 321 310243 - 310219 - H 84 -11.5 -3.18378 | opp_overlap 310219, overlap 310218 ATTTGTAGAATAAAC GTCATCGAAAC ATG GTTTCGGTGAC TATGATAAGATAAAA TERM 322 310377 - 310410 + G 74 -2.6 -5.1356 | overlap 310377 310378 CGTCATCAATTAGAT G-CGTTGCTGATTCAC TCTG GTGAATTA-CAGCGGC TTTTTCTTGATGACC YPTS_0284 310290 - 311621 + | peptidase M24 TERM 323 311765 - 311784 + G 100 -11.4 -4.64676 | opp_overlap 311763 311759 CAACAACATCCAACG GCCCGGCA TCAT TGCTGGGC TTTTGTTGCCGGTCC YPTS_0285 311621 - 312232 + | hypothetical protein TERM 324 312512 - 312531 + G 93 -5 -5.55769 | TTTTGGACGGTGTTG GGTAGTGT CGGG GCATTACC TTTTTTATTCTCAGA TERM 325 312803 - 312792 - g 81 -5.8 -4.95302 | opp_overlap 312792 TGAAAGATAATAAAA TGCG GCCC CGCA TTGCTGAAACGGCTA YPTS_0286 312272 - 313723 + | TrkH family potassium uptake protein YPTS_0287 313745 - 314278 + | protoporphyrinogen oxidase TERM 326 318112 - 318094 - f 82 -10.3 -3.57798 | overlap 318107 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 327 318572 - 318546 - f 70 -9.4 -2.75844 | opp_overlap 318560 318568, overlap 318545 318548 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 328 318619 - 318608 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 329 319731 - 319741 + F 74 -6.8 -4.27316 | opp_overlap 319731 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 330 319997 - 319963 - f 95 -9.2 -4.50627 | opp_overlap 319970 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGCGCGAAACACA TERM 331 319970 - 319990 + F 100 -10.4 -4.8048 | opp_overlap 319963 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG YPTS_0290 320416 - 321453 + | UDP-N-acetylenolpyruvoylglucosamine reductase YPTS_0291 321450 - 322409 + | bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase TERM 332 322436 - 322419 - T 71 -9.9 -2.63723 | opp_overlap 322416 322414 322411, overlap 322418 GTCTGATTAATTAAT GGGAGAT AACT ATCTCCC GTATAGATTATTTTC YPTS_0292 323394 - 322444 - | pantothenate kinase TERM 333 322945 - 322959 + g 100 -8.6 -5.5604 | opp_overlap 322945 ATTATGCATATCATA GGATTC CGG GAATCC TTTTTTCTTCATTAG TERM 334 323264 - 323288 + g 75 -5.7 -4.55093 | TCTAATGAAAGGTCT TCGTTAATCCC TTT GAGTTTAACGA TTTCTTCTTCTGTCA TERM 335 323458 - 323484 + r 91 -8 -4.8048 | opp_overlap 323459, overlap 323459 AACTCCAGATAAGAA ACAAGCTGCATA TTA TAGGCAGCTTGG TTTTTGGTGTAGACA TERM 336 323483 - 323459 - R 100 -11.5 -4.39329 | opp_overlap 323458 323459 ACTCCAGATAAGAAA CAAGCTGCATA TTA TAGGCAGCTTG GTTTTTGGTGTAGAC TERM 337 323459 - 323483 + r 89 -11.5 -3.47806 | opp_overlap 323459, overlap 323458 ACTCCAGATAAGAAA CAAGCTGCATA TTA TAGGCAGCTTG GTTTTTGGTGTAGAC YPTS_0293 324156 - 323605 - | GCN5-related N-acetyltransferase YPTS_0296 325145 - 326329 + | translation elongation factor Tu TERM 338 326371 - 326354 - f 100 -11.3 -4.41548 | opp_overlap 326354 CGACATGCGATAAAA GGGCATC ATTT GATGCCC TTTTTATACGTTGCA TERM 339 326354 - 326371 + F 100 -11.3 -4.91712 | opp_overlap 326354 CGACATGCGATAAAA GGGCATC ATTT GATGCCC TTTTTATACGTTGCA TERM 340 326521 - 326545 + F 79 -7.9 -4.28115 | overlap 326522 326541 GCATCCTTCGGCTTG GTTTGCTTTGC GAT GCGAAGCAAAG TTGTTTGTTCTGAAT TERM 341 326522 - 326544 + F 84 -11.4 -3.15784 | overlap 326521 326541 CATCCTTCGGCTTGG TTTGCTTTGC GAT GCGAAGCAAA GTTGTTTGTTCTGAA TERM 342 326896 - 326939 + G 71 -6.8 -4.25056 | gap 1, overlap 326905 CTGCTGTAATGTCAC TGATTCTATGGGGACT-GGAT GGT ATCCTAGTCCGCTTGGTATCA TTTATTACTGGCCTG YPTS_0297 326580 - 326963 + | preprotein translocase, SecE subunit YPTS_0298 326965 - 327510 + | NusG antitermination factor TERM 343 327551 - 327579 + F 100 -16.2 -5.2853 | TTGAGTCTTGTCTTA GGCGCGAAATTA AAATA TAATTTCGCGCC TTTTGTTTTTAGATG YPTS_0299 327701 - 328129 + | ribosomal protein L11 YPTS_0300 328133 - 328837 + | ribosomal protein L1 TERM 344 328860 - 328901 + F 77 -10.4 -3.16553 | gap 1, overlap 328857 328858 328861 328864 TTGCTTTTATCGCTT TA-CGTGGGCGTAAGGTTT GTCTA GAATCTTACGCCCATGCTA TCTGTTGATCGTTGT TERM 345 328861 - 328899 + F 79 -11.1 -3.13565 | overlap 328857 328860 328858 328864 TGCTTTTATCGCTTT ACGTGGGCGTAAGGTTT GTCTA GAATCTTACGCCCATGC TATCTGTTGATCGTT TERM 346 328864 - 328896 + F 93 -13.6 -2.76689 | overlap 328857 328861 328860 328858 TTTTATCGCTTTACG TGGGCGTAAGGTTT GTCTA GAATCTTACGCCCA TGCTATCTGTTGATC TERM 347 329040 - 329050 + F 71 -4 -4.88895 | opp_overlap 329040 329045 GTGACAGAACCTAAA GAAA ATT TTTC TTTCTTTATTTGTTT TERM 348 329080 - 329045 - f 73 -3.5 -4.94962 | opp_overlap 329040, overlap 329040 AGAACCTAAAGAAAA TTTTTCTTTCTTTAT TTGTTT ATAAAGAATGATAAA GAATAGTCTTTGCTG TERM 349 329124 - 329145 + F 71 -9.5 -3.06915 | GTGTTTCAACGCTCG TTCACGGCA ATTT TGTCGTGAA TTGGGTGACGTGAGT TERM 350 329162 - 329180 + F 95 -13.2 -3.14132 | TGGGTGACGTGAGTT CCGGAGAA TTA TTCTCCGG TTAATCCAGGAGCAA YPTS_0301 329202 - 329699 + | ribosomal protein L10 YPTS_0302 329766 - 330134 + | ribosomal protein L7/L12 TERM 351 330174 - 330199 + T 100 -14.1 -4.64766 | ACTTTATAGGCTGAT GGCTGGTGACT TTTT AGTCATCAGCC TTTTTGCGCTGTAGG YPTS_0303 330417 - 330280 - | hypothetical protein TERM 352 331131 - 331145 + G 73 -8.6 -3.9122 | opp_overlap 331118 AATTTCACCACTGCA CAGATC TTG GATCTG TTCTTTGAGAAAGTG TERM 353 333519 - 333503 - g 100 -10.9 -4.56314 | CGAAGACAAGCAAAA CCAACTG GAA CAGTTGG CAGAGCAGTACGACG TERM 354 334407 - 334397 - g 78 -5.4 -4.91459 | overlap 334385 CAAGATGTACAAAAA CATC GTG GATG GCGATCACCGTATGG YPTS_0304 330477 - 334505 + | DNA-directed RNA polymerase, beta subunit TERM 355 336446 - 336431 - g 71 -2.6 -5.00616 | gap 1 CCGCTGGGTAAAAAA GCTATCT CTA AGAT-GC TGAACACTTGTTACC YPTS_0305 334634 - 338854 + | DNA-directed RNA polymerase, beta' subunit TERM 356 338906 - 338874 - T 74 -10.1 -3.21099 | gap 1, opp_overlap 338879 338880, overlap 338880 TTTGCCTACTACCAA CAAAAA-CCGCATC TTTCGG GATGCGGGTTTTTG AGAGACGAACGGCCC TERM 357 338879 - 338900 + T 74 -6.5 -4.56597 | opp_overlap 338874 338880, overlap 338880 CTACTACCAACAAAA ACCGCATCT TTCG GGATGCGGG TTTTTGAGAGACGAA TERM 358 338899 - 338880 - T 100 -9.3 -5.15167 | opp_overlap 338879 338880, overlap 338874 TACTACCAACAAAAA CCGCATC TTTCGG GATGCGG GTTTTTGAGAGACGA TERM 359 338880 - 338899 + T 76 -10 -3.33744 | opp_overlap 338880 338874, overlap 338879 TACTACCAACAAAAA CCGCATCT TTCG GGATGCGG GTTTTTGAGAGACGA TERM 360 338933 - 338916 - T 76 -9.8 -3.32022 | opp_overlap 338916 TTTTTGAGAGACGAA CGGCCC CTTCTC GGGCCG TTTTTTTTGTTTATT TERM 361 338916 - 338933 + T 100 -9.8 -6.32017 | opp_overlap 338916 TTTTTGAGAGACGAA CGGCCC CTTCTC GGGCCG TTTTTTTTGTTTATT TERM 362 339121 - 339134 + T 70 -3.7 -4.74706 | opp_overlap 339122, overlap 339122 TAACTCACTGATATT ACGCC TTCG GGCGG TTTTTCAATATTACG YPTS_0306 340289 - 339159 - | thiazole biosynthesis protein ThiH TERM 363 339568 - 339558 - G 73 -3.2 -4.86731 | overlap 339562 TTGTTGCAAATAAAA CAGA TGC TCCG CCAGCATATAACAGT YPTS_0307 341097 - 340282 - | thiazole biosynthesis family protein YPTS_0308 341314 - 341099 - | thiamine biosynthesis protein ThiS YPTS_0309 342108 - 341311 - | UBA/THIF-type NAD/FAD binding protein TERM 364 341612 - 341625 + g 77 -4.5 -4.85599 | overlap 341604 AACCCTACAGCACTG CCGCT GATT AGTGG TTTTTGTGCCGTGAC YPTS_0310 342772 - 342098 - | thiamine-phosphate pyrophosphorylase TERM 365 342329 - 342303 - G 74 -10 -3.55563 | opp_overlap 342303 342302 342321, overlap 342305 ACCTGACGGCTTAAA GACGCCAACCCC TGT GGGGATGACGGC ATCTGTTTGGTCTGA TERM 366 342327 - 342305 - G 78 -11.2 -3.35597 | opp_overlap 342303 342302 342321, overlap 342303 CTGACGGCTTAAAGA CGCCAACCCC TGT GGGGATGACG GCATCTGTTTGGTCT YPTS_0311 344804 - 342759 - | thiamine biosynthesis protein ThiC YPTS_0312 345688 - 345179 - | regulator of RpoD, Rsd/AlgQ YPTS_0313 345785 - 346567 + | NUDIX hydrolase YPTS_0314 346660 - 347445 + | hypothetical protein TERM 367 347742 - 347760 + G 78 -11 -3.33492 | TAGCCTGTGAGGTCA CGATGCAG CCA CTGCGTCG TTATCCGCTGGATGC TERM 368 348436 - 348419 - g 79 -9.9 -3.85698 | CGTGTTGGTGATAAA GTTGCCT TGCA AGGCAAC ATGGATCCTTCGGTT YPTS_0315 347564 - 348631 + | uroporphyrinogen decarboxylase TERM 369 348889 - 348905 + G 79 -10.9 -3.56959 | opp_overlap 348888, overlap 348892 CTGGTGGAATACCAG GTTGCCA GAG TGGCAAC TTCTCTGCCTTATAT YPTS_0316 348661 - 349401 + | endonuclease V YPTS_0317 349447 - 350037 + | hypothetical protein YPTS_0318 350226 - 350501 + | histone family protein DNA-binding protein TERM 370 350529 - 350542 + F 78 -5.2 -4.99043 | AATAATAAGCAGGGG GGGG ATAAAA CCCC TTTTGTTTATGCGGC YPTS_0319 350551 - 351204 + | hypothetical protein YPTS_0320 352676 - 351390 - | phosphoribosylamine--glycine ligase TERM 371 351666 - 351634 - G 80 -12 -2.87003 | overlap 351629 351631 CCATGAATAACATCA CCCTGGCGGTAATC TGCTG GATAACCGCCAGCG GCTAAAACGACCCCC YPTS_0321 354325 - 352736 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YPTS_0322 354760 - 354879 + | hypothetical protein TERM 372 356851 - 356814 - f 78 -5.7 -4.7629 | opp_overlap 356808 356814 356817, overlap 356817 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 373 356848 - 356817 - f 78 -7.4 -4.47888 | opp_overlap 356814 356808 356817, overlap 356814 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 374 358307 - 358289 - f 82 -10.3 -3.57798 | overlap 358302 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 375 358767 - 358741 - f 70 -9.4 -2.75844 | opp_overlap 358755 358763, overlap 358740 358743 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 376 358814 - 358803 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 377 359926 - 359936 + F 74 -6.8 -4.27316 | opp_overlap 359926 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 378 360157 - 360191 + F 91 -12.9 -2.87132 | opp_overlap 360157, overlap 360164 CAGGCATCAAATAAA GCCAAGACCCCATGC CCAAA GCGTGGGGTTTTTGC TGTGTGCGAAACACA TERM 379 360191 - 360157 - f 95 -9.2 -4.50627 | opp_overlap 360157 360164 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGTGCGAAACACA TERM 380 360164 - 360184 + F 100 -10.4 -4.84527 | opp_overlap 360157, overlap 360157 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGTGCG TERM 381 360250 - 360230 - f 95 -12.5 -3.35679 | opp_overlap 360230 GCGTTTTACTGATAA CCCCATGCC AAA GGCGTGGGG TTTTTGCTGTGTACG TERM 382 360230 - 360250 + F 100 -14.7 -4.84527 | opp_overlap 360230 GCGTTTTACTGATAA CCCCATGCC AAA GGCGTGGGG TTTTTGCTGTGTACG YPTS_0325 360547 - 360813 + | transposase IS3/IS911 family protein YPTS_0326 360891 - 361646 + | integrase catalytic region TERM 383 361667 - 361686 + T 79 -7.8 -4.31859 | overlap 361666 361663 CCTGGTACGGATATT GGGGAGGG ATCA TCCTCTCC TTATTATTTTGTTCG YPTS_0327 362818 - 362039 - | IstB ATP binding domain-containing protein TERM 384 362737 - 362751 + g 82 -11.4 -3.3506 | overlap 362750 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPTS_0328 363840 - 362818 - | integrase catalytic region TERM 385 363791 - 363806 + g 71 -4.6 -4.56914 | overlap 363792 GCCCGGCTACTCATT CCCTGC TTGT GCAGGA TTTTAATTTCCATAA TERM 386 363862 - 363844 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPTS_0329 364000 - 365157 + | hypothetical protein TERM 387 365198 - 365211 + T 85 -9.5 -4.1721 | opp_overlap 365198 TTTGTCAGCAATCTA GGCCC CTAA GGGCC TTTTAACCTGTAAAT YPTS_0330 366886 - 365231 - | cation/acetate symporter ActP YPTS_0331 367194 - 366883 - | hypothetical protein TERM 388 367248 - 367225 - R 76 -11 -2.64199 | opp_overlap 367225 367225, overlap 367224 GAGGCATCAATTAAG TTTGCCGCCT ATAT AGGCGGCACA ATTTACGACGGTGTC TERM 389 367225 - 367248 + r 76 -11 -2.72829 | opp_overlap 367225 367224, overlap 367225 GAGGCATCAATTAAG TTTGCCGCCT ATAT AGGCGGCACA ATTTACGACGGTGTC TERM 390 367225 - 367249 + r 76 -9.4 -3.5525 | gap 1, opp_overlap 367225 367224, overlap 367225 GAGGCATCAATTAAG TT-TGCCGCCT ATAT AGGCGGCACAA TTTACGACGGTGTCT YPTS_0332 369209 - 367251 - | acetate--CoA ligase TERM 391 368201 - 368177 - G 74 -9.4 -3.72324 | gap 1, opp_overlap 368176 TATGTTTATCAACAA CCTGGC-TCAA GCGA TTGACGCCAGG GTAGTTAGGCACGCC TERM 392 369473 - 369489 + H 76 -6.7 -4.43909 | opp_overlap 369473, overlap 369470 GACTAAAGTAATTTA CATTTAT TAA ATAAATG TTGTTTTATTACCAT YPTS_0333 370064 - 371380 + | sodium:dicarboxylate symporter TERM 393 371461 - 371489 + T 100 -16.1 -5.38054 | AATAGTCTCTACCCA CTCCCCGTCAG CGTCAGA CTGACGGGGAG TTTTTATTTGTCGCC YPTS_0334 372190 - 371558 - | two component LuxR family transcriptional regulator YPTS_0335 375022 - 372203 - | multi-sensor hybrid histidine kinase YPTS_0336 375249 - 376766 + | YscC/HrcC family type III secretion outer membrane protein YPTS_0337 376768 - 377979 + | YscD/HrpQ family type III secretion apparatus protein YPTS_0338 377998 - 378219 + | type III secretion system protein YseE family TERM 394 378811 - 378829 + G 72 -6 -4.386 | overlap 378813 ATTGGGTATTTCGAC CCGGAAAT TGA ATTTCCTG TTTTATGAGAAATTC YPTS_0339 378326 - 379033 + | AraC family transcriptional regulator YPTS_0340 379043 - 379258 + | type III secretion system needle protein YPTS_0341 379255 - 379503 + | type III secretion system protein SsaH family YPTS_0342 379601 - 379852 + | YscI/HrpB family type III secretion apparatus protein YPTS_0343 379849 - 380580 + | YscJ/HrcJ family type III secretion apparatus lipoprotein YPTS_0344 380755 - 381348 + | hypothetical protein YPTS_0345 381345 - 381992 + | HrpE/YscL family type III secretion apparatus protein TERM 395 382918 - 382937 + G 81 -3.4 -5.42514 | overlap 382913 382912 TTTATCACTTTGGCG GCCGCGGT TGCG GCTCCGGC TTTTTTACTTTATCG YPTS_0346 381985 - 384033 + | HrcV family type III secretion protein YPTS_0347 384020 - 385357 + | type III secretion apparatus H+-transporting two-sector ATPase YPTS_0348 385420 - 385755 + | type III secretion system apparatus protein TERM 396 386068 - 386056 - g 90 -9.1 -4.54449 | ACAGCGCATACAAAA CCGCT GGC AGCGG CAACTGCATCAGTTA YPTS_0349 385736 - 386134 + | hypothetical protein YPTS_0350 386112 - 387074 + | type III secretion system apparatus protein YscQ/HrcQ YPTS_0351 387141 - 387851 + | Yop virulence translocation R YPTS_0352 387848 - 388141 + | HrpO family type III secretion protein TERM 397 388815 - 388804 - g 73 -7.2 -4.26076 | opp_overlap 388804 CGATGCCCATTAAAA GCGC ACTG GCGC TTTTTCTCTTACTGA TERM 398 388804 - 388815 + G 88 -7.2 -5.1244 | opp_overlap 388804 CGATGCCCATTAAAA GCGC ACTG GCGC TTTTTCTCTTACTGA YPTS_0353 388143 - 388937 + | type III secretion protein SpaR/YscT/HrcT YPTS_0354 388927 - 389994 + | YscU/HrpY family type III secretion protein TERM 399 390096 - 390118 + F 72 -7.8 -3.77489 | opp_overlap 390097, overlap 390097 390099 TTTATTATGTGAATA ATAGGCTTAT TAT ATAAGCCTAC TTTCCCTGTTACCTT TERM 400 390097 - 390117 + F 81 -11.3 -2.8577 | opp_overlap 390097, overlap 390096 390099 TTATTATGTGAATAA TAGGCTTAT TAT ATAAGCCTA CTTTCCCTGTTACCT TERM 401 390117 - 390097 - f 90 -11.3 -3.66018 | opp_overlap 390097 390096 390099 TTATTATGTGAATAA TAGGCTTAT TAT ATAAGCCTA CTTTCCCTGTTACCT TERM 402 390099 - 390115 + F 71 -9.5 -2.974 | opp_overlap 390097, overlap 390097 390096 ATTATGTGAATAATA GGCTTAT TAT ATAAGCC TACTTTCCCTGTTAC TERM 403 390760 - 390727 - g 73 -2.3 -5.05228 | overlap 390728 ATTAAACTACAAAAA GTGACTGCCGCCTCA CCAC TGACGCAGCACCCAG CCAGAGCGGCACGCC YPTS_0355 390190 - 391404 + | protein of unknown function DUF395 YeeE/YedE YPTS_0356 391401 - 391670 + | SirA family protein YPTS_0357 392731 - 391748 - | LysR family transcriptional regulator TERM 404 392493 - 392529 + g 71 -4.6 -4.49314 | opp_overlap 392496, overlap 392495 392496 GCCTGATGAAACAAG TAA-TCGCCAGCATCGGT TAA AACGATGCTG-CGAGTTG TTCTTTTTAATAGTA TERM 405 392495 - 392526 + g 74 -6.6 -4.33997 | gap 1, opp_overlap 392496, overlap 392493 392496 CTGATGAAACAAGTA ATCGCCAGCATCGGT TAA AACGATGCTG-CGAG TTGTTCTTTTTAATA TERM 406 392496 - 392525 + g 73 -10.1 -3.18772 | gap 1, opp_overlap 392496, overlap 392495 392493 TGATGAAACAAGTAA TCGCCAGCATCGGT TAA AACGATGCTG-CGA GTTGTTCTTTTTAAT TERM 407 392525 - 392496 - G 79 -10.1 -3.63839 | gap 1, opp_overlap 392496 392495 392493 TGATGAAACAAGTAA TCGCCAGCATCGGT TAA AACGATGCTG-CGA GTTGTTCTTTTTAAT YPTS_0358 392901 - 394187 + | putative serine transporter YPTS_0359 394233 - 395414 + | cystathionine beta-lyase TERM 408 395515 - 395527 + T 77 -4.7 -5.0538 | GTTGGTGCTTTGGAA CCGCC ATA GGCTG TTTTTTAGCATAGCG YPTS_0360 396355 - 395555 - | ABC transporter related TERM 409 395947 - 395935 - G 83 -9.1 -4.4009 | CGCCACCGGATAAAA CGCGA TAG TCGCG CTGTGCCAGTGCCAG YPTS_0361 397352 - 396348 - | transport system permease protein YPTS_0362 398188 - 397349 - | periplasmic binding protein TERM 410 397984 - 398017 + g 76 -11 -3.11192 | opp_overlap 397984 397987 397989, overlap 397986 GCGTGCGCATATAAC CAACATCAGGCAGC TTTTGC GCTGCCTGAGGCTG TTGACTGGTGCTGTC TERM 411 398017 - 397984 - G 84 -13.2 -2.68823 | opp_overlap 397984 397986, overlap 397987 397989 GCGTGCGCATATAAC CAACATCAGGCAGC TTTTGC GCTGCCTGAGGCTG TTGACTGGTGCTGTC TERM 412 398014 - 397987 - G 79 -11.3 -3.49618 | opp_overlap 397986 397984, overlap 397984 397989 TGCGCATATAACCAA CATCAGGCAGC TTTTGC GCTGCCTGAGG CTGTTGACTGGTGCT TERM 413 398012 - 397989 - G 85 -12.5 -3.32023 | opp_overlap 397986 397984, overlap 397987 397984 CGCATATAACCAACA TCAGGCAGC TTTTGC GCTGCCTGA GGCTGTTGACTGGTG YPTS_0363 399222 - 398185 - | hemin-degrading family protein TERM 414 399308 - 399280 - R 82 -10.3 -3.60419 | opp_overlap 399276 ATTGTCAAATGATAA TCCGGCAAGCCAC AAA ATGGATTACCGGA TGAATGATTTCAGAC YPTS_0364 401371 - 399341 - | TonB-dependent heme/hemoglobin receptor family protein TERM 415 399416 - 399460 + g 74 -11 -2.79291 | gap 1, overlap 399422 CGCGTAATACTCTTT TTCGAAGGCATTACC-CAATA ACAT TGTTGTGGTCATGCCTTTGAA TGCTTCCTGGCCTTT YPTS_0365 401693 - 401502 - | hemin uptake protein TERM 416 401657 - 401620 - G 76 -8.3 -4.12532 | opp_overlap 401619 401626 CTGGCGATAGACAAA GGCTTACGTGCCACCGA ATAT TCGGTGGCAGGTTCGTC ATTTAACATTGGCAC TERM 417 401626 - 401651 + g 91 -13.3 -3.33037 | opp_overlap 401620, overlap 401619 ATAGACAAAGGCTTA CGTGCCACCGA ATAT TCGGTGGCAGG TTCGTCATTTAACAT YPTS_0366 402429 - 401779 - | NmrA family protein YPTS_0367 403026 - 402463 - | hypothetical protein TERM 418 402654 - 402664 + g 73 -5.4 -4.52047 | overlap 402645 GTTCCAGCAGGGCGA TTGC CTG GCAA TTTTGTGCTCTGATA YPTS_0368 404336 - 403023 - | radical SAM domain-containing protein TERM 419 404565 - 404546 - R 70 -3.5 -4.78981 | opp_overlap 404558, overlap 404548 404560 ATCAAGCAAAAGAAA TGGGGGT TGATAT AGCCCCA CCCATCAGAGTGAGG YPTS_0369 405477 - 404677 - | methylenetetrahydrofolate reductase TERM 420 404907 - 404894 - G 73 -2.3 -5.09521 | opp_overlap 404895, overlap 404895 TCAATAAATGAAAAA TTGCC AAGT GGCAT TATGGATGGCGTAAA YPTS_0370 406280 - 405792 - | hypothetical protein YPTS_0371 407636 - 406677 - | hypothetical protein YPTS_0372 408715 - 407636 - | hypothetical protein TERM 421 408423 - 408404 - G 78 -12.2 -2.57944 | overlap 408403 GAGCATCACACCAAG TGGTACGC CCGC GCGTACCA AGCTGGCGAGCACGA YPTS_0373 409520 - 408708 - | hypothetical protein TERM 422 408995 - 408984 - G 71 -4.4 -4.66938 | ACGGTGAATATAAAA TCCA TCAG TGGA AAAGAGGGATTCCAG YPTS_0374 410649 - 409513 - | hypothetical protein TERM 423 410244 - 410260 + g 74 -4.3 -4.94058 | AATAGAGCAGGTGAT CCGTTGC ATG GCTATGG TTTTCTTTGAATTCG YPTS_0375 411722 - 410661 - | hypothetical protein TERM 424 411520 - 411535 + g 72 -6.1 -4.3467 | opp_overlap 411520 AATGCTTTCACGATA TGGCG GATAAA CGCCA TTTTGGTATCAAGAT YPTS_0376 411998 - 412591 + | stress protein TERM 425 412607 - 412619 + G 73 -10.5 -3.12327 | overlap 412605 TGAATCTGATGCCTG GGGGC AAT GCCCC TGTTGCGTCTCAGAC TERM 426 412748 - 412766 + G 71 -7.4 -4.03234 | ATGGTCAACCGGTTA CGGATGAT AGC ACCATCCG TTTGTCTGGGCAGGG TERM 427 413714 - 413700 - g 74 -10 -3.45634 | AGTTGAACGAATTAA CCGCTA TTT TAGCGG ACACAAAGAAATGGA YPTS_0377 412591 - 413775 + | stress protein TERM 428 413987 - 413972 - g 81 -3.3 -5.42605 | GGAAGAAAAACAAAA GATGA TCATGT TCATC AAGCAGTCGCCTGAA TERM 429 414058 - 414048 - g 71 -6.8 -4.1552 | GAGTTCTTTAACAAA CTGG TTA CCAG CTATGAATTTGATGC YPTS_0378 413808 - 414263 + | tellurite resistance TerB YPTS_0379 414285 - 415322 + | integral membrane protein TerC YPTS_0380 415386 - 415964 + | stress protein TERM 430 416095 - 416119 + F 100 -12.3 -3.61268 | opp_overlap 416085 416097 ATTAACGTATTCATA TATTCAGGGCA AAA TGCTCTGAATA TTTAACACTTCAGTG YPTS_0381 416148 - 416723 + | stress protein TERM 431 416763 - 416745 - f 86 -10.2 -3.90112 | opp_overlap 416745 CCCGTTTCAATTAAA CCCTGCTG CAT CGGCAGGG TTTTTTTTCGCTCAA TERM 432 416745 - 416763 + F 100 -12.4 -5.81412 | opp_overlap 416745 CCCGTTTCAATTAAA CCCTGCTG CAT CGGCAGGG TTTTTTTTCGCTCAA YPTS_0382 417436 - 418074 + | hypothetical protein TERM 433 418659 - 418671 + G 72 -10.5 -3.02013 | opp_overlap 418658 GTGAGAATATGGAAG CCCGG TGG CCGGG TATGGTTGTTAAACT YPTS_0383 418325 - 420703 + | fimbrial biogenesis outer membrane usher protein YPTS_0384 420775 - 421518 + | putative periplasmic chaperone protein YPTS_0385 421529 - 421711 + | hypothetical protein TERM 434 423154 - 423134 - g 73 -8.3 -3.88291 | opp_overlap 423134 GACGAGCTGGATAAA CGTAATCCG GGG CTGATTACG TTTACGCATTGCCCA TERM 435 424125 - 424142 + G 73 -8.3 -3.79138 | opp_overlap 424115, overlap 424129 424131 ATTTACTGGGGTTCA CCCCCGG GCAG CAGGGGG TTTGCTGCGTGTATT YPTS_0386 422975 - 424294 + | hypothetical protein TERM 436 424306 - 424296 - f 75 -3.2 -5.13354 | overlap 424305 GCGAGAAAAAATAAA TCCC AAA GAGA TGGCTTGCTATTTTA YPTS_0387 425303 - 427360 + | berberine/berberine domain-containing protein TERM 437 427389 - 427368 - T 74 -10.1 -3.14878 | overlap 427366 427371 GTCGTTAATCCAACA GGAGGTGCC GAGA GGCACCTCA GACTGCTGACAAACC TERM 438 427386 - 427371 - T 75 -10.4 -2.77791 | overlap 427368 427366 GTTAATCCAACAGGA GGTGCC GAGA GGCACC TCAGACTGCTGACAA TERM 439 427475 - 427449 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 427458, overlap 427450 427465 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 440 427476 - 427450 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 427458, overlap 427449 427465 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_0388 431522 - 427704 - | outer membrane autotransporter TERM 441 428928 - 428948 + g 72 -11.1 -2.50816 | overlap 428927 GTTCACCCGGACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG TERM 442 431274 - 431310 + g 75 -8 -4.21933 | overlap 431276 ACCGGGCCGGGTCTC AACGGCGATATCCGTG CCGAA CAGGGATATCGCGGTG TTATTTTCACCTTCG TERM 443 431276 - 431308 + g 79 -10.6 -3.70108 | overlap 431274 CGGGCCGGGTCTCAA CGGCGATATCCGTG CCGAA CAGGGATATCGCGG TGTTATTTTCACCTT TERM 444 431772 - 431784 + H 70 -2.7 -5.01823 | ATAAGACCCGGCTAA TTCTT TGT AGGAA TTTTCTTGTTATTGT TERM 445 432286 - 432298 + H 72 -7.7 -3.87925 | CGGGTACCTATTCTG CGCTA CAA TAGCG TTCTGTTTACTAATT YPTS_0389 432354 - 432878 + | chorismate lyase YPTS_0390 433044 - 433910 + | 4-hydroxybenzoate polyprenyl transferase TERM 446 434024 - 434002 - T 100 -10.6 -5.09426 | opp_overlap 434002 434022 GGTAATGGTAAAAAA TGGCCGGA TAATGAG TCCGGCCA TTGTTATGGTATTCA TERM 447 434002 - 434024 + T 95 -11.3 -3.89291 | opp_overlap 434002, overlap 434022 GGTAATGGTAAAAAA TGGCCGGAT AATGA GTCCGGCCA TTGTTATGGTATTCA TERM 448 434044 - 434064 + T 93 -12.5 -3.0644 | opp_overlap 434045, overlap 434050 TATGGTATTCAGAAA ACCCCCTGC TAG GCAGGGGGC TGTTAAGCATTGAGT TERM 449 434063 - 434045 - T 100 -16 -4.42653 | opp_overlap 434044 434050 ATGGTATTCAGAAAA CCCCCTGC TAG GCAGGGGG CTGTTAAGCATTGAG YPTS_0391 436586 - 434091 - | phospholipid/glycerol acyltransferase TERM 450 436507 - 436522 + g 77 -6.8 -4.57341 | TCAGAGACCGGATCT GCAGGG ATAA CCTTGC TTTTTACCAACAATT TERM 451 436628 - 436638 + H 71 -6.8 -4.18401 | opp_overlap 436628 TTCGTCGCAAGGATA CCAG AAA CTGG TTTTGAGATCTGTGG TERM 452 436865 - 436882 + G 73 -3.3 -4.84642 | CCTTCTGGTTGGATG TGGGTGC CATA GCGCGCA TTTTATTAATTTGCA YPTS_0392 436714 - 437085 + | diacylglycerol kinase TERM 453 437628 - 437616 - g 71 -4.8 -4.52589 | TGGCGGTACATAAAA CGCA GGATG TGCG TAATGGGCAAGTTGT YPTS_0393 437210 - 437818 + | LexA family transcriptional regulator TERM 454 437845 - 437873 + T 78 -9 -3.88015 | gap 1, opp_overlap 437848, overlap 437846 437848 TTCCTCCCGGAATAA TA-AGCCGTGCCT GTTG AGGTACGGCTCTA TTTCATGATTCTCTA TERM 455 437846 - 437871 + T 78 -9.7 -3.51793 | opp_overlap 437848, overlap 437845 437848 TCCTCCCGGAATAAT AAGCCGTGCCT GTTG AGGTACGGCTC TATTTCATGATTCTC TERM 456 437848 - 437869 + T 95 -12.3 -3.32233 | opp_overlap 437848, overlap 437846 437845 CTCCCGGAATAATAA GCCGTGCCT GTTG AGGTACGGC TCTATTTCATGATTC TERM 457 437869 - 437848 - T 86 -10.1 -3.9461 | opp_overlap 437846 437845 437848 CTCCCGGAATAATAA GCCGTGCCT GTTG AGGTACGGC TCTATTTCATGATTC YPTS_0394 438525 - 438013 - | ferric uptake regulator family protein TERM 458 438465 - 438499 + g 95 -12.2 -4.36411 | TCAGCCGGACGTTTC GTTGTTGGCACAGGCT TTC AGCTTGTGCGAGCAGC TTTTCCTGATTGATA YPTS_0395 438777 - 439814 + | YjbN family TIM-barrel protein TERM 459 439924 - 439957 + F 100 -15.5 -3.13908 | overlap 439918 TTCGGCAAATTGGGC CCCCGAATTATTTAC TGGC GTAAGTGATTCGGGG TTCACTCATTCACTT YPTS_0396 440330 - 440548 + | phage shock protein G TERM 460 440751 - 440735 - T 71 -3 -5.03994 | gap 1, opp_overlap 440743, overlap 440737 TGTTAGAGATAAAAA TAGCCGT ATAA ACGGC-A CGTTCATTTACGTGA TERM 461 440750 - 440737 - T 76 -8.1 -4.14422 | opp_overlap 440743, overlap 440735 TTAGAGATAAAAATA GCCGT ATAA ACGGC ACGTTCATTTACGTG TERM 462 440827 - 440854 + T 100 -14.9 -4.69664 | opp_overlap 440819 440818 440827 440829 440831 AAGAAAGTGTAATGA CAGAGGGCTCC TTAATC GGGGCCCTCTG TTTTTCAATCATGTA TERM 463 440854 - 440827 - T 89 -12.7 -2.78395 | opp_overlap 440827, overlap 440819 440818 440829 440831 AAGAAAGTGTAATGA CAGAGGGCTCC TTAATC GGGGCCCTCTG TTTTTCAATCATGTA TERM 464 440852 - 440829 - T 71 -9.5 -2.9296 | opp_overlap 440827, overlap 440827 440819 440818 440831 GAAAGTGTAATGACA GAGGGCTCC TTAATC GGGGCCCTC TGTTTTTCAATCATG YPTS_0397 441876 - 440893 - | alcohol dehydrogenase TERM 465 441086 - 441108 + g 71 -2.6 -4.99134 | overlap 441090 TAGACATTCAGTGAA GGGCGGGT GACATAG ATCCCCCC TTTTTGGTTTAGAAT TERM 466 442859 - 442849 - g 70 -2.4 -4.84359 | TGATCTCGATAAAAA GACC GCT GGGC TACAAAAATCCGATC YPTS_0398 442259 - 443614 + | replicative DNA helicase TERM 467 444337 - 444317 - g 73 -9.7 -3.28712 | opp_overlap 444305 CTGCGGTGGCCACAA GCGCACC GTGATTG GGTGCGC CCAGGGATTGTGCTG TERM 468 444494 - 444504 + G 71 -8.2 -3.727 | ACCTGGGTCAGTGAG CGCG ATA CGCG TTTAGGTGTGATCGC YPTS_0399 443711 - 444790 + | alanine racemase YPTS_0400 444976 - 446169 + | aminotransferase class I and II TERM 469 446276 - 446295 + F 72 -9.2 -3.18582 | overlap 446279 TTTTACGGCTTGCCG GTTCCCGC CGTC GCGGGTAC TTGGTCAATAACCTC TERM 470 446279 - 446292 + F 70 -9.5 -2.79098 | overlap 446276 TACGGCTTGCCGGTT CCCGC CGTC GCGGG TACTTGGTCAATAAC YPTS_0401 446696 - 447055 + | hypothetical protein TERM 471 447109 - 447143 + T 74 -9.4 -3.35088 | gap 1, overlap 447111 ACGCTGAATGTCATA CC-CTCTGGAGCAAT ACATTG ATTGCCCCAGAGTGG TTCATTAAACGGTTT TERM 472 447111 - 447140 + T 77 -10.8 -2.84098 | overlap 447109 GCTGAATGTCATACC CTCTGGAGCAAT ACATTG ATTGCCCCAGAG TGGTTCATTAAACGG YPTS_0402 449991 - 447148 - | excinuclease ABC, A subunit YPTS_0403 450697 - 451245 + | single-strand binding protein TERM 473 451316 - 451335 + T 100 -15 -3.52073 | opp_overlap 451313 451314 ATTAGCTTTAAACGG CCGCGCCA CGGA TGGCGCGG TTCTAGTATTCAGGA YPTS_0404 451807 - 451493 - | L-rhamnose 1-epimerase YPTS_0405 452969 - 451821 - | lactaldehyde reductase YPTS_0406 453860 - 453036 - | rhamnulose-1-phosphate aldolase TERM 474 453382 - 453395 + g 74 -3.8 -4.88067 | AACAGGCGCGTGAAG CTGG CGTTCT CCAG TTTTTGTACATAACT YPTS_0407 455129 - 453873 - | L-rhamnose isomerase TERM 475 454644 - 454628 - G 73 -7.9 -4.01564 | CAAAATAGGCAGAAA TCCGGCG ACT CGCCTGA CAGTGTTCAATCCAG YPTS_0408 456544 - 455126 - | rhamnulokinase YPTS_0409 456582 - 456758 + | hypothetical protein YPTS_0410 456755 - 456898 + | hypothetical protein TERM 476 456959 - 456940 - f 72 -9.2 -3.10164 | CTATCGAGGACTGAA GCAGGGCG ATTT CGCCGTGC CTGTCGAAAGAGGGT YPTS_0411 456980 - 457801 + | AraC family transcriptional regulator YPTS_0412 457934 - 458806 + | AraC family transcriptional regulator TERM 477 458889 - 458859 - T 86 -11.3 -3.25896 | gap 1, opp_overlap 458858, overlap 458862 CGATTAGCCATAAGA TAACGGGCAG-GTT TTTC AACGCTGCCCGTCA ATATCATCATCTTTA TERM 478 458886 - 458862 - T 88 -10.8 -3.76568 | gap 1, opp_overlap 458858, overlap 458859 TTAGCCATAAGATAA CGGGCAG-GTT TTTC AACGCTGCCCG TCAATATCATCATCT YPTS_0413 459989 - 458955 - | DMT superfamily L-rhamnose-proton symporter YPTS_0414 460143 - 460433 + | hypothetical protein YPTS_0415 460531 - 460806 + | IS1 transposase TERM 479 460833 - 460818 - T 89 -7.5 -5.05116 | opp_overlap 460818 460831 TTAGAAATAACAAAA CCCGC ACATTG GCGGG TTCGTTGACATTAAA YPTS_0416 461294 - 460869 - | hypothetical protein YPTS_0417 461465 - 461346 - | hypothetical protein YPTS_0418 461524 - 461691 + | hypothetical protein YPTS_0419 461721 - 464276 + | peptidase M60 viral enhancin protein TERM 480 464698 - 464679 - T 100 -11.4 -4.84527 | opp_overlap 464679 464678 TCCAGATACGAAAAA GCCCCGCT TTGC AGCGAGGC CTTATAAATAGTGGT TERM 481 464743 - 464759 + T 76 -10.9 -2.62616 | opp_overlap 464742 464740 464737 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA YPTS_0421 465505 - 464930 - | TetR family transcriptional regulator TERM 482 465598 - 465608 + H 71 -8.2 -3.42621 | opp_overlap 465586 ATAGCCCTATCTTTA CGGG CAC CCCG TTGTCGGTTGACGTT TERM 483 466053 - 466035 - g 79 -11.8 -3.14126 | opp_overlap 466034, overlap 466027 TGATAAACCGGAATA TTTCACCC CAC GGGTGAAA GTATTCAAAGGCGAT TERM 484 466366 - 466352 - g 73 -7.1 -4.2558 | CAGCCTGTATTAAAA CCTGC CCTAC GCAGG CTCTGACCTTGGTGG TERM 485 466432 - 466416 - g 83 -9.4 -4.35461 | overlap 466425 TCAACAGCAGCAAAA GCGCCA ACACA TGGCGC TGAATGAGCACAATG TERM 486 466514 - 466502 - g 78 -5.5 -4.87803 | CATCGTCAAATAAAA GCATC CGC GACGC AACACCGGTTAACCT YPTS_0422 465925 - 467940 + | glutamate synthase, small subunit YPTS_0423 467963 - 468520 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YPTS_0424 468543 - 470690 + | formate dehydrogenase, alpha subunit TERM 487 470708 - 470750 + T 100 -8.3 -4.77173 | overlap 470710 TGTCGTGATTGAGCG TTGATTATGCCACGGCGAG ACCTA CTCGCCGTGGCGACAGCTA TTTATTTTGTAACCG TERM 488 470710 - 470748 + T 90 -10.9 -3.99938 | overlap 470708 TCGTGATTGAGCGTT GATTATGCCACGGCGAG ACCTA CTCGCCGTGGCGACAGC TATTTATTTTGTAAC YPTS_0425 472539 - 470752 - | cytochrome c biogenesis protein transmembrane region YPTS_0426 472874 - 472515 - | CutA1 divalent ion tolerance protein TERM 489 472653 - 472688 + g 74 -9.2 -3.75629 | gap 1 ATGGTCAGTATTGCT CTTGAACAAGAG-CTGA ACC TCATACTCTTGTTCGAG TTTACCTTCCCAGTA TERM 490 472980 - 472967 - R 71 -9.5 -2.91126 | overlap 472962 ACAAATCATACTATA CCCCG AAGC CGGGG CCAGCCAGAAGATGA TERM 491 473055 - 473024 - R 77 -10.2 -3.18511 | gap 1, overlap 473028 GAGAGATAGACCGAA GT-TATTGGGGCGCA TGA TGCGCCCCATCAGAC AGATTACAGAACCAG TERM 492 473050 - 473028 - R 91 -13.4 -2.56571 | overlap 473024 GATAGACCGAAGTTA TTGGGGCGCA TGA TGCGCCCCAT CAGACAGATTACAGA YPTS_0427 474360 - 473059 - | anaerobic c4-dicarboxylate antiporter TERM 493 473613 - 473627 + g 70 -10 -3.17229 | opp_overlap 473613, overlap 473611 GCGGCGTTTCAACGA GCCCAA CAC TTGGGC TGTTGATGATCGCAT TERM 494 474455 - 474427 - R 100 -10.4 -5.04601 | gap 2, opp_overlap 474431 GCCAGAAAGTAAAAA GGCACGC-TG-TCC AGA GGAGCATGCGTGCC TTAGAGGGCTACCGA YPTS_0428 475916 - 474480 - | aspartate ammonia-lyase YPTS_0429 476340 - 476942 + | FxsA cytoplasmic membrane protein YPTS_0430 477197 - 477490 + | chaperonin Cpn10 TERM 495 478168 - 478158 - g 71 -6.8 -4.25056 | opp_overlap 478157 TACTTCATCAATAAA CCAG AAA CTGG CTCTATTGAACTTGA YPTS_0431 477537 - 479183 + | chaperonin GroEL TERM 496 479260 - 479291 + F 100 -16.8 -4.38154 | opp_overlap 479252 479265, overlap 479265 AGGTAAAGCTGTTGA TAAAAGCGAGTAGG GTGA CCTGCTCGCTTTTA TTTTGTGAAGACTGT TERM 497 479265 - 479286 + F 100 -12.3 -5.18371 | opp_overlap 479252 479265, overlap 479260 AAGCTGTTGATAAAA GCGAGTAGG GTGA CCTGCTCGC TTTTATTTTGTGAAG TERM 498 479286 - 479265 - f 93 -10.1 -4.37658 | opp_overlap 479265 479260, overlap 479252 AAGCTGTTGATAAAA GCGAGTAGG GTGA CCTGCTCGC TTTTATTTTGTGAAG YPTS_0432 479807 - 480205 + | hypothetical protein YPTS_0433 481494 - 480490 - | lysine 2,3-aminomutase YodO family protein TERM 499 481662 - 481647 - g 77 -8.2 -4.1466 | opp_overlap 481646 481647 481649 AGCGAATTCGTAAAA CCCGGC AAAG GCCAGG CTTTTGCGCGTGTTA YPTS_0434 481554 - 482120 + | translation elongation factor P TERM 500 482479 - 482493 + G 77 -4.2 -5.09762 | TTATTACCCTCGTCG CAATGG CTG CCAGTG TTTTTCTATTGGCCT YPTS_0435 482220 - 482681 + | small multidrug resistance protein TERM 501 482820 - 482798 - T 100 -13.4 -4.0825 | overlap 482816 GCTTTAACCAAAGAA CGGCCTGCCA GAA CAGCAGGCCG CGAATACGGCATATG YPTS_0436 483202 - 482846 - | fumarate reductase D subunit YPTS_0437 483611 - 483219 - | fumarate reductase subunit C TERM 502 483552 - 483541 - G 73 -2.2 -5.10064 | overlap 483542 483550 CGCAACATATAAAAA CGGT AGAA ACCA AGCTGTTGCCACCAG YPTS_0438 484362 - 483628 - | succinate dehydrogenase and fumarate reductase iron-sulfur protein YPTS_0439 486178 - 484355 - | fumarate reductase, flavoprotein subunit YPTS_0440 486636 - 487613 + | lysyl-tRNA synthetase-related protein GenX TERM 503 487834 - 487808 - T 82 -5.9 -4.97405 | gap 1, opp_overlap 487810 487813, overlap 487810 ACTTACAAAAACAAA TACCCTG-ACCT GTGA AGGCGCAGGGCA TTTTTATTTCTTACT TERM 504 487813 - 487834 + T 91 -6.5 -5.48514 | opp_overlap 487810 487808, overlap 487810 CAAAAACAAATACCC TGACCTGTG AAGG CGCAGGGCA TTTTTATTTCTTACT YPTS_0441 491199 - 487858 - | MscS mechanosensitive ion channel TERM 505 488941 - 488968 + g 72 -11.3 -2.71364 | gap 1, opp_overlap 488958 TTCCTCACCACGGGC GCGCTGCGC-GA GAATA TCGGCGCGGCGC TGCTTGGCGCGATCA TERM 506 489025 - 488991 - G 85 -12.3 -3.30701 | gap 1, opp_overlap 488991 488994, overlap 488986 488994 CGCGATCAAAGGCAA TACGCCGCCGCTGGAT CAGC ATCCAACGGCGG-ATA ATATGATAGACCACT TERM 507 488994 - 489023 + g 78 -12.1 -2.66316 | opp_overlap 488986 488991 488994, overlap 488991 GATCAAAGGCAATAC GCCGCCGCTGGAT CAGC ATCCAACGGCGGA TAATATGATAGACCA TERM 508 489023 - 488994 - G 87 -14.3 -2.52602 | opp_overlap 488994 488991, overlap 488986 488991 GATCAAAGGCAATAC GCCGCCGCTGGAT CAGC ATCCAACGGCGGA TAATATGATAGACCA TERM 509 489393 - 489383 - G 71 -4.6 -4.59109 | opp_overlap 489387, overlap 489387 GACAGGCGGTAAAAA CGCA TTG CGCG CGCAACTTGTGTTGG TERM 510 490530 - 490540 + g 80 -4.6 -5.04175 | overlap 490529 GCTGAGCCTGAACCC GTGC TTC GCGC TTTTTGTATAATTCG YPTS_0442 492122 - 491241 - | phosphatidylserine decarboxylase TERM 511 492185 - 492157 - R 70 -5.8 -4.38141 | overlap 492159 CGTTAGATAAAATAA GGGGGCGCATTG TATCG CTCTGCGCCCAC CCTGTCAGACCCTTC YPTS_0443 493499 - 492447 - | ribosome small subunit-dependent GTPase A TERM 512 494211 - 494228 + G 80 -6.3 -4.71776 | GTCAGTCGCCGAGCT TGCTTAC TATC GTGAGCA TTTTATTCAATCTTA YPTS_0444 493561 - 494244 + | exonuclease RNase T and DNA polymerase III TERM 513 494769 - 494754 - T 70 -7.6 -3.73647 | CGTACCGATGAAGAA TTCGCA AGCA TGCGAA GACAGATTTAGTACA TERM 514 494845 - 494829 - T 76 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 515 494964 - 494934 - T 89 -7 -5.40464 | overlap 494935 CATCAGAAATAAAAA GTGTATAAATAACC AAT GGGTATTTATACAG GCGACGCGGGAATAG TERM 516 494963 - 494935 - T 86 -10.5 -3.82652 | overlap 494934 ATCAGAAATAAAAAG TGTATAAATAACC AAT GGGTATTTATACA GGCGACGCGGGAATA TERM 517 495012 - 494996 - T 76 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 518 495155 - 495139 - T 76 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 519 495415 - 495434 + T 84 -2.9 -5.69262 | gap 1 ACTTGTGCTTTTTTT TGCACTTG ATTGC CAAG-GCA TTTTTATTTTTATGC YPTS_0447 496639 - 495500 - | iron-sulfur cluster binding protein TERM 520 496437 - 496454 + g 73 -8.5 -3.86202 | opp_overlap 496440, overlap 496440 GCATAGCGGCTGACA TAACCCA ATTC TGGGTTA TTTAATGTACTGGCA TERM 521 496563 - 496581 + g 77 -10.3 -3.59087 | GCACGCAGCATACCG TGGCGTG CCATC CACGCCA TTTCGCCATGATATT TERM 522 496659 - 496641 - H 71 -8.2 -3.53012 | opp_overlap 496640 TCTTCCGCCGTCAAA TCGGTATC GCA AATACCGA CTTGCTGGAAACCTA TERM 523 497790 - 497778 - g 78 -9.1 -3.97602 | CAACAGAGTGATAAA CCCAC ATT GTGGG ATGCGGATGCACTTA YPTS_0448 496734 - 498248 + | carbohydrate kinase, YjeF related protein YPTS_0449 498259 - 498729 + | hypothetical protein TERM 524 499157 - 499143 - g 72 -5.7 -4.36433 | CGAAAGATGAACAAA GTACC CGCCT GGTAC TGGAACTGACGCAGA TERM 525 499206 - 499182 - g 74 -2.8 -5.04601 | gap 1 CGCAGAAAGTAAAAA CCCGTGCTGTC ACCC AACAGT-CGGG CAATAACTACACGGT TERM 526 500453 - 500439 - g 75 -11.4 -2.72511 | overlap 500438 GCCAGCGGTTGAAAG TGCCCG CGT CGGGCA GTACGGTAACGGCAG YPTS_0450 498737 - 500650 + | cell wall hydrolase/autolysin YPTS_0451 500666 - 502573 + | DNA mismatch repair protein MutL TERM 527 503067 - 503085 + G 100 -3.9 -6.23545 | gap 1, opp_overlap 503066 503065, overlap 503070 AATGATCCCCAAAGG CTCTCCAG AGCA CTGGA-AG TTTTTTTTATTTCAG YPTS_0452 502566 - 503507 + | tRNA delta(2)-isopentenylpyrophosphate transferase YPTS_0453 503624 - 503929 + | RNA chaperone Hfq YPTS_0454 503916 - 504035 + | hypothetical protein YPTS_0455 504028 - 505314 + | GTP-binding proten HflX TERM 528 505727 - 505714 - g 76 -2.3 -5.19261 | AAACTGAGCAAAAAA CTGAG TAGC CTCGG TGGCAAAGGTAGCGG YPTS_0456 505555 - 506817 + | HflK protein YPTS_0457 506821 - 507825 + | HflC protein TERM 529 507939 - 507957 + F 95 -9.5 -4.43213 | TGAACGTAACACCGA GGCCCGT CTAGT GCGGGCC TTTTCATGTGTTGAA YPTS_0458 507949 - 508197 + | hypothetical protein TERM 530 508667 - 508657 - g 77 -6.8 -4.57341 | AATGCGCGTGAAAAA GCAC GTG GTGC AAAAGCTATCGGTAC TERM 531 508809 - 508786 - g 79 -10.4 -3.67976 | opp_overlap 508802, overlap 508790 508803 GCTATCAAGCTGAAA GAAATTGTGG AATA CCACAACTTC CAGTTGGTGCATTAC TERM 532 508805 - 508790 - g 78 -7.6 -4.46233 | opp_overlap 508802, overlap 508786 508803 TCAAGCTGAAAGAAA TTGTGG AATA CCACAA CTTCCAGTTGGTGCA TERM 533 509041 - 509025 - g 72 -10.1 -3.06796 | overlap 509027 TGTCACCTCATCTAA CACCACC GCG GGTGGCG TAGCGACAGGCTCTG YPTS_0459 508297 - 509595 + | adenylosuccinate synthetase TERM 534 509682 - 509711 + F 100 -15.9 -2.80816 | opp_overlap 509682 509685 509689, overlap 509685 509689 TATTTGTGTTCGAAA CAATAAACCGGGC TGAT GTCCGGTTTATTG TCTAATACATCCAGC TERM 535 509711 - 509682 - f 100 -13.7 -3.53224 | opp_overlap 509682 509685 509689, overlap 509685 509689 TATTTGTGTTCGAAA CAATAAACCGGGC TGAT GTCCGGTTTATTG TCTAATACATCCAGC TERM 536 509685 - 509708 + F 91 -11.8 -3.55447 | opp_overlap 509682 509685 509689, overlap 509682 509689 TTGTGTTCGAAACAA TAAACCGGGC TGAT GTCCGGTTTA TTGTCTAATACATCC TERM 537 509708 - 509685 - f 81 -9.6 -3.90744 | opp_overlap 509685 509682 509689, overlap 509682 509689 TTGTGTTCGAAACAA TAAACCGGGC TGAT GTCCGGTTTA TTGTCTAATACATCC TERM 538 509689 - 509704 + F 87 -8.2 -4.41114 | opp_overlap 509685 509682 509689, overlap 509685 509682 GTTCGAAACAATAAA CCGGGC TGAT GTCCGG TTTATTGTCTAATAC TERM 539 509704 - 509689 - f 73 -6 -4.56978 | opp_overlap 509689 509685 509682, overlap 509685 509682 GTTCGAAACAATAAA CCGGGC TGAT GTCCGG TTTATTGTCTAATAC TERM 540 510379 - 510410 + G 85 -5.1 -5.30155 | overlap 510383 GGTTAAAGATAATTC CCCGCTCTACAAG CTATTA CTTGTTGAGTAGG TTTTTTACTTAATAA YPTS_0460 509945 - 510409 + | BadM/Rrf2 family transcriptional regulator TERM 541 512053 - 512064 + G 76 -7.2 -4.36914 | opp_overlap 512052 GATTCTGGCGAATAT CGCG GCGG CGCG TTTTGTGGAAAAACA TERM 542 512995 - 512981 - g 100 -9.2 -4.82901 | GCGGGTGGACAAAAA CGCCCA CGT CGGGCG AAAAAACCGGTAAAC YPTS_0461 510650 - 513184 + | ribonuclease R TERM 543 513218 - 513242 + F 74 -10 -3.08072 | gap 1 TGGTGGTGTGCTACT TGCCGGGCGGC TTTT GTCGCCCG-CA TATAATTTAATTATT YPTS_0462 513303 - 514043 + | RNA methyltransferase TERM 544 514121 - 514100 - f 75 -8.8 -3.60098 | ACTCCGCAGCCTAAA GCCAACAT CTTTGT ATGTTGGC TCAGACTGCTGACAA TERM 545 514210 - 514184 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 514193, overlap 514185 514200 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 546 514211 - 514185 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 514193, overlap 514184 514200 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 547 514290 - 514311 + G 74 -3 -5.08088 | opp_overlap 514291, overlap 514291 TGTCAATAACCTCAA ACCAACAT CTTTGT ATGTTGGC TTTTTGTTGGGAATT YPTS_0463 514223 - 514411 + | hypothetical protein YPTS_0464 514451 - 516094 + | acyl-CoA dehydrogenase domain-containing protein YPTS_0465 516553 - 516242 - | hypothetical protein YPTS_0466 516744 - 517493 + | phospholipase/carboxylesterase YPTS_0467 517568 - 517846 + | hypothetical protein TERM 548 518205 - 518180 - g 71 -9.1 -3.50832 | gap 1, overlap 518172 518178 GGTTAAAGCGAAAGA CGAACGCCGTGA GCG TCACGAC-TTCG CGTCAGAAGCCAATG YPTS_0468 517860 - 518252 + | ribosomal protein S6 YPTS_0469 518411 - 518578 + | primosomal replication protein N YPTS_0470 518583 - 518810 + | ribosomal protein S18 YPTS_0471 518850 - 519302 + | ribosomal protein L9 TERM 549 519323 - 519351 + T 100 -14 -3.29312 | opp_overlap 519328, overlap 519328 GCGGCTGTAACCTGT TAAAACGCCAGC CTAGT GCTGGCGTTTTG CTTTTGGTTATCGGT TERM 550 519328 - 519346 + T 100 -11.7 -4.72729 | opp_overlap 519328, overlap 519323 TGTAACCTGTTAAAA CGCCAGC CTAGT GCTGGCG TTTTGCTTTTGGTTA TERM 551 519346 - 519328 - T 100 -11.7 -4.11484 | opp_overlap 519328 519323 TGTAACCTGTTAAAA CGCCAGC CTAGT GCTGGCG TTTTGCTTTTGGTTA YPTS_0472 519823 - 519368 - | hypothetical protein YPTS_0473 520703 - 519963 - | opacity-associated protein A YPTS_0474 521052 - 521672 + | peptidylprolyl isomerase FKBP-type TERM 552 521690 - 521722 + T 100 -22.9 -4.44046 | opp_overlap 521697, overlap 521691 CTTTGGTACCGATTA TGCCAAAGGGCGACA GGG TGTCGCCCTTTGGCG TTTATTTACGATAAG TERM 553 521691 - 521721 + T 100 -24.2 -3.25946 | opp_overlap 521697, overlap 521690 TTTGGTACCGATTAT GCCAAAGGGCGACA GGG TGTCGCCCTTTGGC GTTTATTTACGATAA TERM 554 521715 - 521697 - T 100 -14.6 -3.62275 | opp_overlap 521691 521690 ACCGATTATGCCAAA GGGCGACA GGG TGTCGCCC TTTGGCGTTTATTTA YPTS_0475 522435 - 521770 - | hypothetical protein TERM 555 522463 - 522495 + r 76 -9.4 -3.47573 | opp_overlap 522463 522470 TTGAGTAATTATACA TCTATAACATGCAT AATAA ATACATGTTATAGA TTGTGATATAACTCC TERM 556 522495 - 522463 - R 83 -11.6 -3.02096 | opp_overlap 522463, overlap 522470 TTGAGTAATTATACA TCTATAACATGCAT AATAA ATACATGTTATAGA TTGTGATATAACTCC YPTS_0476 524522 - 522564 - | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 557 524717 - 524746 + H 76 -9.5 -3.49169 | opp_overlap 524715, overlap 524716 GATTTTATAAGTACT TTCCTGACAAATA TGGC TATTTATCAGGAA TATTATTAGTCTTCA YPTS_0477 524986 - 525726 + | 3'(2'),5'-bisphosphate nucleotidase TERM 558 525746 - 525774 + T 100 -15.3 -2.84812 | opp_overlap 525743 525744, overlap 525735 ATTGCTGCACAAGTT GGTGCAGTTGGTC GAT GACCTGCTGCACC TCTGCTGATGTCAGT YPTS_0478 526292 - 525729 - | hypothetical protein YPTS_0479 526628 - 526840 + | hypothetical protein TERM 559 526911 - 526886 - T 77 -10.4 -3.14468 | opp_overlap 526889, overlap 526889 CCTGAGCAGATTTAA TCACGGCCCC AACTCA GGGGCCGTTA TGTTTACCGTGATCA TERM 560 526908 - 526889 - T 83 -12.1 -2.77658 | opp_overlap 526889, overlap 526886 GAGCAGATTTAATCA CGGCCCC AACTCA GGGGCCG TTATGTTTACCGTGA TERM 561 526889 - 526908 + T 100 -12.1 -3.82946 | opp_overlap 526889 526886 GAGCAGATTTAATCA CGGCCCC AACTCA GGGGCCG TTATGTTTACCGTGA YPTS_0480 528279 - 526948 - | hypothetical protein TERM 562 527628 - 527613 - G 73 -7.6 -4.12738 | GTAGATCAAAGTAAA TCACGT TTTC ACGTGA AGTCATGGAGGAAGG YPTS_0481 529195 - 528557 - | peptide methionine sulfoxide reductase TERM 563 528680 - 528706 + g 83 -7.3 -4.68424 | GGCAACCGTAATTTC GCTGGTAATCA CCCGT TGATCACCGGC TTTTTCCATGGCTTG YPTS_0482 529470 - 531206 + | surface antigen (D15) YPTS_0483 531203 - 535141 + | hypothetical protein YPTS_0484 535144 - 535500 + | AIG2 family protein TERM 564 535593 - 535542 - T 100 -9.4 -5.84381 | gap 1, opp_overlap 535542 535559 GCAGTAACAAAAAAA CACCGCACAAGGTAAAC-GGCCCTA TTT TGGGGCCTGTTCACGATAGGCGGTG TTTTTTTATAGGCGA TERM 565 535542 - 535593 + T 100 -7.2 -5.60993 | gap 1, opp_overlap 535542, overlap 535559 GCAGTAACAAAAAAA CACCGCACAAGGTAAAC-GGCCCTA TTT TGGGGCCTGTTCACGATAGGCGGTG TTTTTTTATAGGCGA TERM 566 535559 - 535575 + T 73 -10.1 -3.04144 | opp_overlap 535542, overlap 535542 CCGCACAAGGTAAAC GGCCCTA TTT TGGGGCC TGTTCACGATAGGCG YPTS_0485 536145 - 535618 - | inorganic pyrophosphatase TERM 567 536285 - 536305 + r 100 -13.3 -3.40836 | opp_overlap 536285, overlap 536278 GTTAGAAATAAAAAA CAGCGGCTT AAA AGGCCGCTG TTAGCTTATTTTTGA TERM 568 536305 - 536285 - R 100 -11.1 -5.72622 | opp_overlap 536285 536278 GTTAGAAATAAAAAA CAGCGGCTT AAA AGGCCGCTG TTAGCTTATTTTTGA YPTS_0486 537463 - 536345 - | inositol phosphatase/fructose-16-bisphosphatase TERM 569 536394 - 536404 + g 73 -5.4 -4.63218 | AACCCTTCCGCATCT TCCA CCA TGGA TTTTGTTCCCACGAA TERM 570 537083 - 537073 - G 75 -5.4 -4.72272 | opp_overlap 537071 537073 TTCCGCCATCAAAAA TGAC AAT GTCA TCTTCTTCTTCGGAG YPTS_0487 537529 - 538914 + | UDP-N-acetylmuramate TERM 571 539016 - 538993 - T 85 -9.6 -4.12188 | overlap 538995 TCATCATCTTGAAAA TATGCCCCAT GTTA ATGGGGCATT GCAGACTGCTGACAA TERM 572 539014 - 538995 - T 93 -12.2 -3.6581 | overlap 538993 ATCATCTTGAAAATA TGCCCCAT GTTA ATGGGGCA TTGCAGACTGCTGAC TERM 573 539105 - 539079 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 539088, overlap 539080 539095 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 574 539106 - 539080 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 539088, overlap 539079 539095 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_0488 539473 - 539210 - | hypothetical protein TERM 575 539815 - 539833 + r 75 -7.4 -4.3129 | opp_overlap 539815 GCGAGGGTGAGATAA TGCGGC ACATAAG GCCGCA TTTTACTGCTCGGTG YPTS_0489 540332 - 539862 - | arginine repressor, ArgR YPTS_0490 540796 - 541734 + | malate dehydrogenase, NAD-dependent TERM 576 541784 - 541799 + T 74 -10.4 -2.59431 | overlap 541780 CTGCAAGCGTTACTC GGCCCA TCCA TGGGCC TCGCTTCTGCGAGGC TERM 577 542070 - 542038 - T 95 -7.8 -5.08178 | opp_overlap 542038 ATATAGAGATAAAAA GGGGCTACTG AAAAGAGTACGAA CAGTAGCCCC TGATATTGTAATGAT YPTS_0491 542443 - 542168 - | putative transcriptional regulator, Nlp TERM 578 542576 - 542586 + H 73 -2.6 -5.16969 | CAAAAAATTTAAATG TTTT CTA AAAA TTTCTTTTTTGTGTC YPTS_0492 542627 - 542974 + | MuA-transposase/repressor protein CI DNA-binding TERM 579 543043 - 543025 - T 89 -10.3 -3.93236 | opp_overlap 543025 CATTAATGGGATAAA CCCGGAT GGTGA ATCCGGG TTTCTAAATAATTTC TERM 580 543025 - 543043 + T 89 -10.3 -3.96224 | opp_overlap 543025 CATTAATGGGATAAA CCCGGAT GGTGA ATCCGGG TTTCTAAATAATTTC YPTS_0493 544042 - 543071 - | polyprenyl synthetase YPTS_0494 544302 - 544613 + | ribosomal protein L21 YPTS_0495 544633 - 544890 + | ribosomal protein L27 TERM 581 544919 - 544941 + F 100 -12 -4.84529 | opp_overlap 544919 TGTAAATAGATGTAA GCCCTGCAAT TTC GTTGCGGGGC TTTTTACATTTCTGG TERM 582 545941 - 545916 - g 77 -6.9 -4.62441 | gap 1, opp_overlap 545912, overlap 545917 TCGGACAGAAATAAA CCTGGTTGCTTT GCA AAAGCAGCC-GG TGAATGATTTACGGA YPTS_0496 544978 - 545964 + | hypothetical protein YPTS_0497 545965 - 547137 + | GTP-binding protein Obg/CgtA TERM 583 547159 - 547190 + T 100 -9.5 -5.0133 | CAGTTATTCTTTGAA TAAGGGCTGCCAT TTTTTC GTGGTGGCCCTTA TTTTTTGGCAGGGTG YPTS_0498 548299 - 547232 - | integral membrane sensor signal transduction histidine kinase YPTS_0499 548958 - 548296 - | two component transcriptional regulator YPTS_0500 550412 - 548964 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TERM 584 549463 - 549482 + g 73 -2.2 -5.03715 | gap 1 GTTCTGAAGACGGTG TCAG-CGAT CAT ATTGTCTGA TTTTTTCAGCATGAT TERM 585 550819 - 550804 - g 74 -4 -4.88918 | gap 1, overlap 550813 CGACTTGAAAGAAAA TGCG-GA ATA TCACGCA GCCCGTGAGCAACAA YPTS_0501 550670 - 551146 + | transcription elongation factor GreA TERM 586 551232 - 551207 - T 100 -10.5 -4.88405 | opp_overlap 551213, overlap 551208 AAGTTGTAAAGAAAA GTAAAAGGCCG CAAG CGGCCTTTTAT CAGAACAAAGTGCAT TERM 587 551231 - 551208 - T 100 -14 -3.51958 | opp_overlap 551213, overlap 551207 AGTTGTAAAGAAAAG TAAAAGGCCG CAAG CGGCCTTTTA TCAGAACAAAGTGCA TERM 588 551213 - 551226 + T 88 -9.5 -4.36914 | opp_overlap 551208 551207 TAAAGAAAAGTAAAA GGCCG CAAG CGGCC TTTTATCAGAACAAA TERM 589 551252 - 551242 - T 74 -6.8 -4.35483 | opp_overlap 551241 551242 TTTTATCAGAACAAA GTGC ATG GCAC CTTTCTCTAAAACAA YPTS_0502 551567 - 551274 - | hypothetical protein YPTS_0503 551714 - 552343 + | ribosomal RNA large subunit methyltransferase J TERM 590 552488 - 552506 + G 73 -8.2 -3.83205 | GCGAATCGAATGGCC GTAGAGTG GAT TACTCTAC TTTCATGTCCGACGT YPTS_0504 552400 - 554334 + | ATP-dependent metalloprotease FtsH TERM 591 554395 - 554378 - f 90 -11.3 -3.71284 | opp_overlap 554378 TTGTGACTAATATAA CCCTAGG CTTG CCTAGGG TTTTTTTGTTGCTAA TERM 592 554378 - 554395 + F 100 -11.3 -5.84381 | opp_overlap 554378 TTGTGACTAATATAA CCCTAGG CTTG CCTAGGG TTTTTTTGTTGCTAA YPTS_0505 554454 - 555287 + | dihydropteroate synthase TERM 593 556186 - 556196 + G 71 -6.8 -4.24342 | opp_overlap 556185 TAGCCCTGAAAGATC TGGG TAT CCCA TTTGTTCGTGCCAAA YPTS_0506 555297 - 556637 + | phosphoglucosamine mutase TERM 594 556670 - 556650 - f 83 -11.1 -3.53761 | TAACCCTTTTTTAAA GGGGGAGAG GCA CTCTTCCCC AAGAAATTACGCTGA YPTS_0507 556860 - 557195 + | preprotein translocase, SecG subunit TERM 595 557275 - 557245 - f 74 -9.9 -3.08603 | opp_overlap 557243, overlap 557244 AAAGAGTTTTAAAAG GGTTGTTGTTACT TGGAC AGTAAAAACAACC AGTTGAATCAGTGCC TERM 596 557510 - 557524 + F 100 -7.2 -5.79526 | opp_overlap 557512 TCCGGCCCCCGCAAC CACTTT CCT AAAGTG TTTTTTTTCAAATGT TERM 597 557622 - 557610 - f 76 -10.5 -3.06501 | GAGAGTTGCACCGAA GCCGC TTT GCGGC AAACAGGGTCCAGTT TERM 598 557639 - 557667 + F 100 -12.5 -3.90744 | opp_overlap 557645 557646, overlap 557646 AACAGGGTCCAGTTG CATAAAGCCCCGA ATT TCGGGGTTTTTTG TTATTTGACAGCAGA TERM 599 557661 - 557645 - f 72 -7.9 -3.87815 | opp_overlap 557639 557646, overlap 557646 GTCCAGTTGCATAAA GCCCCGA ATT TCGGGGT TTTTTGTTATTTGAC TERM 600 557646 - 557660 + F 100 -11.4 -5.72254 | opp_overlap 557645 557646, overlap 557639 TCCAGTTGCATAAAG CCCCGA ATT TCGGGG TTTTTTGTTATTTGA TERM 601 557660 - 557646 - f 83 -11.4 -2.92475 | opp_overlap 557646 557639, overlap 557645 TCCAGTTGCATAAAG CCCCGA ATT TCGGGG TTTTTTGTTATTTGA TERM 602 557689 - 557702 + F 100 -8.1 -5.80248 | GACAGCAGAATCACT GGGCT ATTA AGCCC TTTTTTTATGTCTTG YPTS_0508 557727 - 558179 + | hypothetical protein YPTS_0509 558201 - 559688 + | NusA antitermination factor TERM 603 560222 - 560209 - g 77 -3.1 -5.19261 | AAACCGACGAAAAAA CTAAG CCAG CTCAG ACCGATAAAGCACGT YPTS_0510 559713 - 562391 + | translation initiation factor IF-2 TERM 604 562443 - 562412 - f 81 -10.8 -3.36515 | opp_overlap 562415, overlap 562410 562413 TCTGATTTGCAAATA TCCATTTGGGGGGC CTTG GCCCCCCAAACTGT CTGGAGAATCCAAAT TERM 605 562442 - 562413 - f 95 -14.3 -2.61695 | opp_overlap 562415, overlap 562412 562410 CTGATTTGCAAATAT CCATTTGGGGGGC CTTG GCCCCCCAAACTG TCTGGAGAATCCAAA TERM 606 562415 - 562440 + F 93 -13.3 -2.87931 | opp_overlap 562413 562412 562410 GATTTGCAAATATCC ATTTGGGGGGC CTTG GCCCCCCAAAC TGTCTGGAGAATCCA YPTS_0511 562457 - 562867 + | ribosome-binding factor A YPTS_0512 562867 - 563841 + | tRNA pseudouridine synthase B TERM 607 563855 - 563838 - f 91 -6.9 -5.56263 | opp_overlap 563841, overlap 563841 AGTAGAAAATAAAAA GTAGGCC ACAC GGCCTGC CTTGCGATCCCGCGA YPTS_0513 563963 - 564232 + | ribosomal protein S15 TERM 608 564270 - 564254 - f 100 -13.7 -3.86015 | opp_overlap 564254 GAGTTTCGGGAGAAA GGGGCCA AGT TGGCCCC TTTTTTCTAAGAAGT TERM 609 564254 - 564270 + F 100 -13.7 -5.24531 | opp_overlap 564254 GAGTTTCGGGAGAAA GGGGCCA AGT TGGCCCC TTTTTTCTAAGAAGT YPTS_0514 564496 - 566610 + | 3' exoribonuclease TERM 610 566622 - 566653 + F 100 -13.8 -3.48276 | opp_overlap 566619 GTAATTAAGTCATTC CACAGCTCCTTGCT CATC GGTAAGGGGCTGTG TTATCTCAGGGGCGG TERM 611 567499 - 567487 - g 74 -9.1 -3.78934 | opp_overlap 567486 TCTGGGGGACAAGAA CACCG CTT CGGTG CTGTTCAAACTGACG YPTS_0515 566735 - 567619 + | TPR repeat-containing protein TERM 612 568597 - 568579 - g 71 -3.8 -4.7497 | CGTACGTACCAAAAA TGCGACCT TGG AAGTAGCA GAAGCCCTTGAGCGT YPTS_0516 567806 - 569800 + | DEAD/DEAH box helicase domain-containing protein TERM 613 569837 - 569852 + F 100 -10.4 -5.65177 | opp_overlap 569837 AATTAAACGTAAAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCTAT TERM 614 569852 - 569837 - f 100 -10.4 -4.83759 | opp_overlap 569837 AATTAAACGTAAAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCTAT YPTS_0517 570036 - 570404 + | hypothetical protein YPTS_0518 570428 - 570739 + | XRE family transcriptional regulator TERM 615 570771 - 570756 - g 100 -10.4 -4.82855 | GATTAAACGTAAAAA CCAGCC TTCG GGCTGG TTCAGACTGCTGACA TERM 616 570861 - 570835 - g 82 -10.1 -3.82218 | gap 1, opp_overlap 570844, overlap 570836 570851 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 617 570862 - 570836 - g 71 -10.1 -2.88849 | gap 1, opp_overlap 570844, overlap 570835 570851 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 618 570957 - 570942 - g 79 -10.4 -3.72051 | opp_overlap 570942 GTCAACAACCTCAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCTGT TERM 619 570942 - 570957 + G 100 -10.4 -5.65177 | opp_overlap 570942 GTCAACAACCTCAAA CCAGCC TTCG GGCTGG TTTTTTTATGGCTGT YPTS_0519 570739 - 571029 + | hypothetical protein YPTS_0520 572049 - 570994 - | luciferase-like monooxygenase TERM 620 572972 - 572940 - g 70 -2 -4.9138 | ATTAGCCAAAGAAAA TGGTGTGTC-GCAGCA AGA TGCTGATGACGC-CCA AACCAGCTATCAGCA TERM 621 573024 - 573014 - g 73 -2.4 -5.00884 | opp_overlap 573015 ATGTGGCCGAAAAAA CTGC TGC GCTG GAAACGGCGCGTATC YPTS_0521 572656 - 573717 + | RND family efflux transporter MFP subunit TERM 622 575387 - 575400 + G 75 -5.9 -4.65895 | GTGTGTTGTTTATTC GCCTG CCAA CGGGC TTTTTACCTACCGAA YPTS_0522 573721 - 576846 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 623 577125 - 577091 - g 88 -13.6 -3.1247 | gap 1 ATTGCCGATATCGAA GCGGCCCG-TGCGCA ATATGG TGTGCAACGGGCCGC CCAGCTACCAACGGT TERM 624 577296 - 577278 - g 80 -3 -5.41143 | opp_overlap 577278 577281, overlap 577279 TATTTGGTAAAAAAA GCAGCTTG TCT CATGCTGA ATTTGAAACCTATCT YPTS_0523 576848 - 578254 + | RND efflux system outer membrane lipoprotein TERM 625 578379 - 578335 - T 100 -16 -4.183 | gap 1, opp_overlap 578341 578344, overlap 578341 TTAAGCGTTAATAAA CATG-AATAACAGGGAGGCCA GCAA TGACCTCCCTGTTATTACTTG ATAAGGCAAGGCTGT TERM 626 578341 - 578372 + T 100 -16 -3.39895 | opp_overlap 578335 578341, overlap 578344 GTTAATAAACATGAA TAACAGGGAGGCCA GCAA TGACCTCCCTGTTA TTACTTGATAAGGCA TERM 627 578372 - 578341 - T 100 -18.2 -3.54382 | opp_overlap 578341 578344, overlap 578335 GTTAATAAACATGAA TAACAGGGAGGCCA GCAA TGACCTCCCTGTTA TTACTTGATAAGGCA TERM 628 578344 - 578369 + T 100 -13.3 -3.83844 | opp_overlap 578341 578335, overlap 578341 AATAAACATGAATAA CAGGGAGGCCA GCAA TGACCTCCCTG TTATTACTTGATAAG YPTS_0524 579273 - 578395 - | peptidase U32 YPTS_0525 580280 - 579285 - | peptidase U32 TERM 629 580237 - 580211 - G 71 -7.3 -4.11295 | gap 1, opp_overlap 580210 580209, overlap 580201 TCAAACCGATATAAA CCGC-ATCGGCA CCAT TGTCGATTGCGG CCTTTAATGCAGGTA YPTS_0526 580515 - 581117 + | sterol-binding domain-containing protein YPTS_0527 581111 - 581614 + | GCN5-related N-acetyltransferase YPTS_0528 582076 - 581789 - | excinuclease ABC subunit C TERM 630 581824 - 581840 + g 93 -8 -5.32396 | TTGTCAATAACCTCG GCTGGT CAATC ACCAGC TTTTCTTTTTGCTGT YPTS_0529 584322 - 582304 - | heparinase II/III family protein TERM 631 582479 - 582465 - G 75 -5.6 -4.75174 | overlap 582467 CATTCAAGTCAAAAA CACAGG TGA CCTGAG CTGCTGGTTGTTGGT YPTS_0530 585569 - 584346 - | hypothetical protein YPTS_0531 586130 - 587443 + | extracellular solute-binding protein TERM 632 587684 - 587708 + G 73 -8.5 -3.95653 | CACGTTGTTATATGT CCTGGTCACCA TGG TGGTGGCCGCG TTTATCGCCTTCTTT YPTS_0532 587451 - 588335 + | binding-protein-dependent transport systems inner membrane component YPTS_0533 588354 - 589193 + | binding-protein-dependent transport systems inner membrane component TERM 633 589557 - 589569 + G 71 -9.1 -3.5393 | opp_overlap 589555 AGGTCGAATCAACCG CCGAG TTG CTCGG TTTACAAGCGCTGCT TERM 634 590160 - 590170 + G 71 -8.2 -3.77209 | overlap 590157 TCTTTTGCAGCACGG GCGG GGG CCGC TTTACCTCTGTATTT YPTS_0534 589205 - 590299 + | ABC transporter related TERM 635 590422 - 590436 + G 74 -9.2 -3.67597 | TTTTCACCTCTGCAA CCGGCG TTA CGTCGG TTATTAAGTGAAGCG YPTS_0535 590314 - 591480 + | hypothetical protein YPTS_0536 591609 - 592052 + | hypothetical protein YPTS_0537 592204 - 592842 + | hypothetical protein YPTS_0538 593640 - 592888 - | phosphonate metabolism protein PhnP YPTS_0539 594212 - 593631 - | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN YPTS_0540 595348 - 594212 - | phosphonate metabolism protein PhnM YPTS_0541 596064 - 595345 - | phosphonate C-P lyase system protein PhnL TERM 636 595450 - 595461 + g 71 -7.2 -4.02051 | opp_overlap 595441 595450 595449 GAAAATCCCGACAAT CGCG GCAC CGCG TTGTTTAGCTTCATC TERM 637 596201 - 596176 - R 81 -11.9 -2.52543 | gap 1, opp_overlap 596176 596198 AGTGCCTGCAATCGA GCAGGA-GGGCA GGC CGCCCCTCCTGC ACCTGCGGCTTTGCT TERM 638 596229 - 596241 + r 71 -9.1 -3.30605 | opp_overlap 596227 GCTCAACATCCAACG CCCAC TAC GTGGG TTCCCTTCTTCATCT TERM 639 596274 - 596305 + r 100 -12.4 -3.5393 | TCGGCTTTACGGGCT GGCTTTAACCTACA TCCC TGTAGGTTGACGCC TTTCGCCGACGTCCT YPTS_0542 597244 - 596453 - | phosphonate C-P lyase system protein PhnK YPTS_0543 598125 - 597244 - | phosphonate metabolism PhnJ YPTS_0544 599296 - 598118 - | phosphonate metabolism YPTS_0545 599922 - 599296 - | phosphonate C-P lyase system protein PhnH YPTS_0546 600398 - 599922 - | phosphonate C-P lyase system protein PhnG TERM 640 600241 - 600223 - G 85 -8 -4.79352 | overlap 600224 TCACCGAGAATAAAA CGGCGGCC GGT GGCCCCCA TCCGCGCCTGCAATT TERM 641 600240 - 600224 - G 71 -9.3 -3.46888 | overlap 600223 CACCGAGAATAAAAC GGCGGCC GGT GGCCCCC ATCCGCGCCTGCAAT YPTS_0547 601124 - 600399 - | GntR family transcriptional regulator YPTS_0548 601304 - 601438 + | hypothetical protein YPTS_0549 601766 - 601452 - | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 642 601981 - 602010 + r 74 -9.2 -3.33492 | GGTGACTCAGCCCAT CAGCAGGCCTCG CATTGA CGAGGCCTGAGG TTGTCGCCTACCTAC YPTS_0550 604231 - 602093 - | anaerobic ribonucleoside-triphosphate reductase TERM 643 603259 - 603269 + g 77 -6.8 -4.56597 | GTTTTGGGAATACCG CCGT TTT ACGG TTTTTACCCAAGCCC TERM 644 604300 - 604277 - R 78 -10.2 -3.24245 | overlap 604273 TTATCCACAAGGCAA CCCGCAGCAC ATCA GGGCTGCGAG GGGGATGTGGATGCT TERM 645 604460 - 604473 + r 75 -5.3 -4.82901 | TCCCTGTTCAGTACG TCACA GAAT TGTGA TTTTTATGGCGAGGG YPTS_0551 605381 - 604665 - | ABC transporter related YPTS_0552 606246 - 605368 - | ABC transporter related TERM 646 605821 - 605854 + g 82 -11.7 -3.28712 | opp_overlap 605823, overlap 605823 GGCCAGTGCATTTAA TACCCGTTCATGCGC ATCA GCGCTTGAAAGGGTG TTATGCAGCAACAGA TERM 647 605852 - 605823 - G 81 -12.1 -3.09327 | opp_overlap 605821 605823 CCAGTGCATTTAATA CCCGTTCATGCGC ATCA GCGCTTGAAAGGG TGTTATGCAGCAACA TERM 648 605823 - 605852 + g 82 -12.1 -3.21276 | opp_overlap 605823, overlap 605821 CCAGTGCATTTAATA CCCGTTCATGCGC ATCA GCGCTTGAAAGGG TGTTATGCAGCAACA YPTS_0553 607075 - 606239 - | binding-protein-dependent transport systems inner membrane component YPTS_0554 608143 - 607094 - | binding-protein-dependent transport systems inner membrane component TERM 649 608126 - 608095 - G 74 -4.3 -4.94243 | opp_overlap 608095 608097 608100, overlap 608097 608100 GTAAAAAAACCAAAA GATGACGCCGGGA GGGGGT TCCCGGCGTGGTA TTTAATGCTACAGAC TERM 650 608097 - 608124 + g 74 -9.8 -3.48024 | opp_overlap 608095 608097 608100, overlap 608095 608100 AAAAAAACCAAAAGA TGACGCCGGGAG GGGG TTCCCGGCGTGG TATTTAATGCTACAG TERM 651 608100 - 608121 + g 85 -13.7 -2.88215 | opp_overlap 608097 608095 608100, overlap 608097 608095 AAAACCAAAAGATGA CGCCGGGAG GGGG TTCCCGGCG TGGTATTTAATGCTA TERM 652 608121 - 608100 - G 83 -13 -3.01018 | opp_overlap 608100 608097 608095, overlap 608097 608095 AAAACCAAAAGATGA CGCCGGGA GGGGGT TCCCGGCG TGGTATTTAATGCTA YPTS_0555 609807 - 608239 - | extracellular solute-binding protein TERM 653 609999 - 609983 - H 75 -5.2 -4.79352 | TTAGTGATAATAAAA TATTCC GTAAA GGAATA ATGATGAGGTTATTG TERM 654 610081 - 610107 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 610070, overlap 610076 610082 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 655 610082 - 610108 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 610070, overlap 610076 610081 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPTS_0556 610446 - 610904 + | hypothetical protein YPTS_0557 612174 - 611167 - | ornithine carbamoyltransferase YPTS_0558 612385 - 612816 + | hypothetical protein YPTS_0559 613678 - 613175 - | GCN5-related N-acetyltransferase TERM 656 613794 - 613756 - R 100 -14.7 -4.66833 | overlap 613757 GTGCAATGGTAAAAA GCAGGGGCCATGATAGT GAATA ATTATCATGGCCCCTGG TGACGACTGACTGAT TERM 657 613793 - 613757 - R 100 -18.2 -3.39618 | overlap 613756 TGCAATGGTAAAAAG CAGGGGCCATGATAGT GAATA ATTATCATGGCCCCTG GTGACGACTGACTGA YPTS_0560 616718 - 613821 - | valyl-tRNA synthetase TERM 658 615044 - 615058 + g 71 -7.1 -4.07687 | opp_overlap 615043 CATCACGGATCAGAC CGGTC ATGTA GACCG TTTTGAACGGCACCT YPTS_0561 617180 - 616731 - | DNA polymerase III chi subunit HolC TERM 659 617217 - 617200 - R 95 -11.3 -3.80625 | TCTCTACAACGTAAA GGGCACA AAAA TGTGCCC TCAGACTGCTAACAA YPTS_0562 618842 - 617331 - | peptidase M17 leucyl aminopeptidase domain-containing protein TERM 660 617376 - 617409 + g 76 -9.5 -3.67597 | opp_overlap 617382, overlap 617379 CAGTAGGAACTGAGA CAACAACGCGACTGG CCGG CCAGTCGCGCCCTTG TTCTTACCTGAACGC TERM 661 617403 - 617382 - G 100 -15.9 -3.90761 | opp_overlap 617379 617376 GAACTGAGACAACAA CGCGACTGG CCGG CCAGTCGCG CCCTTGTTCTTACCT YPTS_0563 619122 - 620216 + | permease YjgP/YjgQ family protein TERM 662 620834 - 620817 - g 75 -3.4 -5.0095 | gap 1, opp_overlap 620817 620831 AAAAAGACAATAAAA CCTGGCG GTTAT CGC-AGG TTGATGAATCTGATT YPTS_0564 620216 - 621292 + | permease YjgP/YjgQ family protein TERM 663 621511 - 621496 - f 73 -9 -3.42663 | opp_overlap 621496, overlap 621494 ATTAGTATGTAAAGA GACCTC AACT GAGGTC TTTTTTTATGTCTAA TERM 664 621496 - 621511 + F 100 -9 -5.76633 | opp_overlap 621494 621496 ATTAGTATGTAAAGA GACCTC AACT GAGGTC TTTTTTTATGTCTAA TERM 665 622701 - 622722 + F 73 -8.7 -3.57128 | overlap 622696 AAGTTGAAGTCTGTG GCCACGGTT TCAG AACCATGGC TTGTAGTTCATTGAT TERM 666 623005 - 623026 + F 100 -12.3 -4.44277 | opp_overlap 623005 TTTATATCACTGAAA GCCTCTGTC AAAA GACAGGGGC TTTTGCGTTTTAATC TERM 667 623026 - 623005 - f 80 -10.1 -3.70149 | opp_overlap 623005 TTTATATCACTGAAA GCCTCTGTC AAAA GACAGGGGC TTTTGCGTTTTAATC YPTS_0567 623061 - 623183 + | hypothetical protein TERM 668 623207 - 623172 - T 91 -8.4 -4.61482 | overlap 623174 CCTCTGAAAAAAGAA CACTCAGCATAAGT GTGGCAGG ACTTACGCTGAGGG AGGGACGTCCATCAC TERM 669 623205 - 623174 - T 83 -9.6 -3.91465 | overlap 623172 TCTGAAAAAAGAACA CTCAGCATAAGT GTGGCAGG ACTTACGCTGAG GGAGGGACGTCCATC YPTS_0568 626051 - 623196 - | type III restriction protein res subunit TERM 670 625008 - 624980 - G 85 -10.3 -4.24002 | opp_overlap 624982 GGTCAAAGCCCAAAA CATTGCCGTCG CGAATAC CGTCGGCAATG CTGTAGCGGTGTAGC TERM 671 625321 - 625333 + g 90 -7.7 -5.01811 | ACAATTAACGTATCG GCAGT TGC ACTGC TTTTTAATTTAGTAA TERM 672 626861 - 626875 + G 71 -7.1 -4.0274 | GCTTTCAATCAAGGT GCCGA ATCCA TCGGC TTGTTTCGTACTGAA TERM 673 627855 - 627869 + G 77 -4.2 -5.00884 | TGGCTGCGGATGTGT GGGC GCGAGAA GCCC TTTTTTCCACCGGAT YPTS_0569 626096 - 628162 + | phosphoenolpyruvate-protein phosphotransferase YPTS_0570 628715 - 628224 - | hypothetical protein YPTS_0571 629328 - 629038 - | antibiotic biosynthesis monooxygenase YPTS_0572 630267 - 629392 - | deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase TERM 674 629417 - 629440 + g 70 -2.4 -4.83615 | gap 1, overlap 629422 629423 TCATGGAGGAACAGT TGGTAA-GCCG CAG CGGCATTCTCA TTTTTATGCACAATG TERM 675 629864 - 629844 - G 81 -12.5 -3.0094 | CCGTACCGATATACA CCTGTGCGG CGA CCGCGCAGG CATTGAGCCGTACAG TERM 676 630156 - 630141 - G 73 -5.4 -4.56597 | gap 1, opp_overlap 630141, overlap 630142 TTTTCGGGTTAAAAA TCCGCGC CAG GCG-GGA TTGCATTCCCCAATC YPTS_0573 631342 - 630323 - | ABC transporter, perplasmic sugar binding protein YPTS_0574 632388 - 631387 - | inner-membrane translocator YPTS_0575 633440 - 632385 - | inner-membrane translocator YPTS_0576 635017 - 633434 - | ABC transporter related TERM 677 633997 - 634014 + g 80 -9.1 -4.26076 | opp_overlap 633992, overlap 634009 AATACACTAAGCCCG CCGCCAG GCGA TTGGCGG TTTTCATCGCCGTGA TERM 678 634551 - 634537 - G 78 -7.8 -4.36411 | opp_overlap 634537 CATCAAGGATCAAAA TGCGCG AGT CACGCA TCAGGCCGCGCATAA YPTS_0577 635362 - 636357 + | DeoR family transcriptional regulator YPTS_0578 636528 - 638120 + | carbohydrate kinase FGGY TERM 679 638238 - 638204 - f 100 -10.7 -4.29928 | gap 1, opp_overlap 638221 AATTAATAGCGAAAA GCGGCCAGC-TTGCGC TTCG GGGCAATGCTCGCCGC CGTCACGTGCTGCGT TERM 680 638813 - 638777 - g 70 -8 -3.79747 | overlap 638799 GCATGCAGGATTAAA GGCGCAAATCAGTG GCGAAAAAG CACTGTTTAGCGCC CTAAAAAAACAACAT TERM 681 638812 - 638799 - g 71 -4.5 -4.58663 | overlap 638777 ATCAGTGGCGAAAAA GCACT GTTT AGCGC CCTAAAAAAACAACA TERM 682 638869 - 638881 + G 71 -6.9 -4.15044 | ATCAATGGCGGGCTG CGGCG TAT TGCCG TTTGTTAAAACCCAC YPTS_0579 638436 - 639629 + | lipopolysaccharide heptosyltransferase III TERM 683 639779 - 639797 + G 71 -4.6 -4.59414 | CCAACGAATAATCAG CTAATGAG TGT TTCATTGG TTTTGATTATTATCA TERM 684 640510 - 640521 + G 75 -5.8 -4.5442 | TAATTCCTCCATGGG GCAG CGTT CTGC TTTTGTGGTTGAAGC YPTS_0580 639677 - 640903 + | O-antigen polymerase TERM 685 640933 - 640950 + F 100 -9.1 -5.49569 | opp_overlap 640913 640933 ATCTCTATGATATAA CGGTACC ATTT GGTGCCG TTTTTTATATTCGTC TERM 686 641124 - 641137 + F 70 -2.5 -4.98436 | TAATTAACTTCTGAT TTAAA TTAA TTTAA TTTTTATAGTGTTGG TERM 687 642308 - 642331 + G 74 -9 -3.65201 | opp_overlap 642313, overlap 642313 TAGGTCAGGTACCAC TAAAAGCTGC TGTA GTAGCTTTTA TTATTAAAGATATTC TERM 688 642313 - 642326 + G 77 -4.5 -4.89477 | opp_overlap 642313, overlap 642308 CAGGTACCACTAAAA GCTGC TGTA GTAGC TTTTATTATTAAAGA YPTS_0581 641269 - 642537 + | SufS subfamily cysteine desulfurase TERM 689 642573 - 642558 - f 72 -6.2 -4.258 | TCATCGACGAATAAA TTACTG GTTA CAGTAA GAGGTATTATATGAA TERM 690 643109 - 643120 + G 70 -2.2 -4.86621 | CGTAGTGAAAGTAGT GATC TGCA GGTC TTTTTGGTTCAGCGT TERM 691 643522 - 643496 - g 78 -5.9 -4.67982 | gap 1, opp_overlap 643496 643501, overlap 643491 CGGCAGGCAAGAAAA GAGAGCGATCCC TACT GGGATC-CTATC TCTTCAGCGGCAAAG YPTS_0582 642584 - 643762 + | acyl-CoA dehydrogenase domain-containing protein YPTS_0583 643764 - 644039 + | thiamineS protein YPTS_0584 644041 - 644877 + | hypothetical protein TERM 692 644855 - 644870 + F 71 -3.2 -5.04222 | CTGATACTCTGGCTG CTGTCG TCGT CGAAAG TTTTTAATTTAATTA YPTS_0585 644910 - 646136 + | UBA/THIF-type NAD/FAD binding protein YPTS_0586 647276 - 647509 + | hypothetical protein YPTS_0587 647561 - 648643 + | RND family efflux transporter MFP subunit TERM 693 650140 - 650128 - g 78 -5.5 -4.93365 | TTCCAGAACCAAAAA CAGCC TGA AGCTG ATGCGGATAAGCCGG TERM 694 650453 - 650463 + G 76 -8.2 -3.9712 | CAACCATAGGTCAGG GCGC AAT GCGC TTTATGCTGACCTAC YPTS_0588 648643 - 651729 + | acriflavin resistance protein TERM 695 651769 - 651792 + T 100 -11 -6.34424 | TAAAAGTAATTTCAG CAGCCCCG GTCAGTCA CGGGGCTG TTTTTTTTTTGACGA YPTS_0589 652424 - 652092 - | hypothetical protein YPTS_0590 652834 - 652571 - | hypothetical protein YPTS_0591 653225 - 654310 + | pectinesterase YPTS_0592 656005 - 654851 - | diguanylate cyclase TERM 696 656512 - 656526 + G 82 -5.6 -5.1356 | AGCATGTTGTACCAC GTGCGG TTG CGGCAC TTTTTGTTACTGCCA YPTS_0593 656272 - 656604 + | hypothetical protein YPTS_0594 658525 - 657482 - | methyltransferase small domain-containing protein TERM 697 657606 - 657578 - G 76 -9.5 -3.72576 | TTCGTGGCTACCAAA TGCGGCATCCAGC AAG GCAGGATACGGCA GGAAGGAGTTCGCTA TERM 698 658419 - 658433 + g 70 -10 -3.24924 | opp_overlap 658418 658419, overlap 658417 CCGGCTGCATCAAAT TGCGCT GGC AGCGCA TCTTGTAAATCACCG TERM 699 658951 - 658968 + GH 75 -8.4 -3.87815 | opp_overlap 658944 658951 GTGCACAATTACATA GCCCAG AATTAG CTGGGC TTTATCAAGATGCGG YPTS_0595 658638 - 659075 + | DNA polymerase III psi subunit TERM 700 659135 - 659111 - gf 78 -4.2 -5.09895 | CATGGACGGAAAAAA CGTTCGCC AGTAATCAG GGCGACCG GTACCTCAATTTTAA YPTS_0596 659020 - 659463 + | ribosomal-protein-alanine acetyltransferase TERM 701 659444 - 659468 + F 80 -3.6 -5.25154 | gap 2, opp_overlap 659433, overlap 659445 AAGATGCCATTATGA TGGCG-T-TGCC AAT GGCATAGCGCCG TTTTATTGTTTTTTT TERM 702 659859 - 659833 - g 80 -6.6 -4.81851 | opp_overlap 659844, overlap 659837 659838 ATGGAAATGGAAAAA CAACGCGGTA TCTCCAT TACCACGTCG GTAATGCAGTTTCCG TERM 703 660094 - 660070 - g 80 -9.3 -4.2461 | ACCTTTATGAACAAA TTGGACCGCGA AAT TCGTGATCCAA TGGAAGTTCTGGATG YPTS_0597 659641 - 661230 + | peptide chain release factor 3 YPTS_0598 661558 - 662172 + | transport-associated TERM 704 662290 - 662311 + F 72 -8 -3.82946 | opp_overlap 662289 662290 AGAGCCAAATGAAAG GGTGTCTG TTTAAT CAGGCACC TTATCTTTAAACTGG YPTS_0599 662339 - 662500 + | hypothetical protein TERM 705 662957 - 662975 + G 78 -5.2 -4.85129 | opp_overlap 662958, overlap 662958 TCACGCTGAACAATA TTTGCGTC AGG GGCGCGAG TTTTTAATGTGTGCT YPTS_0600 662577 - 663845 + | patatin YPTS_0601 663861 - 664670 + | TatD-related deoxyribonuclease TERM 706 664823 - 664797 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 664806, overlap 664798 664813 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 707 664824 - 664798 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 664806, overlap 664797 664813 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 708 665281 - 665293 + G 74 -4.1 -4.85782 | TATTGCTTATGGTAA TGAGG GGA TCTCA TTTATTTTTGGCGGA YPTS_0602 665075 - 666346 + | nucleoside transporter TERM 709 666355 - 666376 + F 77 -10.9 -2.81178 | opp_overlap 666355 666354, overlap 666354 ACTGTGATGTATAAG GTGCCGTTT TGTA GAACGGCAC GTTTCCCCTTCATTC TERM 710 666376 - 666355 - f 74 -10.2 -2.61383 | opp_overlap 666354 666355, overlap 666354 ACTGTGATGTATAAG GTGCCGTT TTGTAG AACGGCAC GTTTCCCCTTCATTC TERM 711 666486 - 666460 - f 79 -11 -3.15544 | opp_overlap 666445 GCGTATTCTCACCAA TACGCTATTCTT GAT ACGAATAGCGTA ATCGGGGCCAATAGA YPTS_0603 666967 - 667764 + | deoxyribose-phosphate aldolase YPTS_0604 667792 - 669207 + | thymidine phosphorylase YPTS_0605 669339 - 670562 + | phosphopentomutase YPTS_0606 670687 - 671406 + | purine nucleoside phosphorylase TERM 712 671444 - 671479 + T 79 -7.6 -4.31293 | overlap 671448 TCCAGCGGTTTTTTC TTTCTTCAGCGGTAGA GAGC TCTGCCGCTGAATTGA TTTATTCCTCTCTGA TERM 713 671448 - 671475 + T 100 -15 -3.71527 | overlap 671444 GCGGTTTTTTCTTTC TTCAGCGGTAGA GAGC TCTGCCGCTGAA TTGATTTATTCCTCT YPTS_0607 672219 - 671518 - | putative membrane protein Smp TERM 714 672259 - 672277 + H 73 -8.8 -3.51597 | overlap 672260 CCTGCATACTTGATG TTGCTGCG TGA CGCAGCGG TTCTGATTCACCCTT TERM 715 672260 - 672276 + H 71 -10.1 -2.70476 | overlap 672259 CTGCATACTTGATGT TGCTGCG TGA CGCAGCG GTTCTGATTCACCCT YPTS_0608 672457 - 673437 + | phosphoserine phosphatase SerB YPTS_0609 673556 - 674938 + | DNA repair protein RadA TERM 716 675048 - 675061 + F 71 -4.5 -4.74052 | TAATAGTGCCAATCC CGCAG CATA CTGTG TTATTTTTGTTTAGT TERM 717 675155 - 675139 - g 71 -2.9 -4.93547 | overlap 675140 GCAATTAAGCAAAAA GGCTGCA CCT TACAGCA GGTGGCTGAGGCCAG YPTS_0610 675097 - 676368 + | XRE family transcriptional regulator TERM 718 676469 - 676441 - f 83 -11.9 -2.84634 | overlap 676444 676454 CTGGATATCATCACA TGAGCCGAATA TACTGGC TATTCGGCTCA CCAAATGAGCCGAAT TERM 719 676500 - 676444 - f 76 -10.9 -2.67992 | overlap 676441 676454 676475 GATATCATCACATGA GCCGAATATACTGGCTATTCGGCTCAC CAA ATGAGCCGAATAATGAGGCTAATCGGC TCACTCTCCGGTTGG TERM 720 676490 - 676454 - f 72 -9.5 -3.09289 | overlap 676441 676444 676475 CATGAGCCGAATATA CTGGCTATTCGGCTCAC CAA ATGAGCCGAATAATGAG GCTAATCGGCTCACT TERM 721 676503 - 676475 - f 73 -8.2 -3.72695 | overlap 676454 676444 ATTCGGCTCACCAAA TGAGCCGAATAA TGAGG CTAATCGGCTCA CTCTCCGGTTGGGAG YPTS_0611 676525 - 677655 + | filamentation induced by cAMP protein Fic TERM 722 677653 - 677682 + T 70 -9.3 -2.88861 | opp_overlap 677659, overlap 677658 677659 GTGAAATACCCTGAC TAAAAAGGCCTGC GATT GCAGGCCCTTCTA TCTGTCAGGCTACTA TERM 723 677658 - 677677 + T 78 -9.2 -3.64198 | opp_overlap 677659, overlap 677653 677659 ATACCCTGACTAAAA AGGCCTGC GATT GCAGGCCC TTCTATCTGTCAGGC TERM 724 677659 - 677676 + T 89 -12.7 -2.78197 | opp_overlap 677659, overlap 677658 677653 TACCCTGACTAAAAA GGCCTGC GATT GCAGGCC CTTCTATCTGTCAGG TERM 725 677676 - 677659 - T 100 -12.7 -4.72986 | opp_overlap 677658 677653 677659 TACCCTGACTAAAAA GGCCTGC GATT GCAGGCC CTTCTATCTGTCAGG YPTS_0612 679483 - 677816 - | ABC transporter related TERM 726 678714 - 678728 + g 88 -2.1 -5.7946 | gap 1 TCAGAAGAGGCTTCT TGCGCC AGAC GG-GCA TTTTTTTGTTCCAGC TERM 727 679652 - 679631 - R 90 -10.9 -4.05926 | GAATAAAGGCAGAAA CCGGTTTAC AGCC GCAAACCGG TAAATAAAGGACGTT YPTS_0613 680172 - 679666 - | OmpA/MotB domain-containing protein YPTS_0614 681479 - 680178 - | diguanylate cyclase TERM 728 681121 - 681153 + g 79 -10 -3.90766 | TGATGGATAGGCCCA TCGTCAGGTAGC GCCCAGTAA GCTATCTGACGA TTATGTTTATCAATG YPTS_0615 682099 - 681476 - | hypothetical protein TERM 729 682216 - 682236 + r 72 -6.3 -4.34263 | overlap 682210 682214 682226 682228 ATATCATCGTAAATT TGAGATTTA TCT TAAATCTTA TTTATGTTATTGAAA TERM 730 682283 - 682267 - R 84 -2.9 -5.59879 | opp_overlap 682267 TAGAAATATAAAAAA CCCGA CTGTTTT CCGGG TTTTTGTCAGGTAGT TERM 731 682423 - 682453 + r 77 -3.8 -5.1523 | opp_overlap 682423 TTATTTACCTCAAAA GCCCCAGAGCTG GGCTGGA CTGATCCGGGGC TTTTTCTCTTCTGAC YPTS_0616 685200 - 682474 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC YPTS_0617 685770 - 687689 + | lytic transglycosylase catalytic YPTS_0618 687945 - 688337 + | Trp operon repressor YPTS_0619 688876 - 688334 - | hypothetical protein YPTS_0620 688986 - 689633 + | phosphoglycerate mutase YPTS_0621 690496 - 689630 - | AraC family transcriptional regulator YPTS_0622 690540 - 690725 + | hypothetical protein YPTS_0623 690722 - 691189 + | CreA family protein TERM 732 691316 - 691339 + T 70 -7.4 -3.76607 | opp_overlap 691318, overlap 691318 GATATAAAAACAAAA AAGCCAGCAT CTGT GTGCTGGCTC TTTCCGTCTCTATTC TERM 733 691318 - 691337 + T 78 -10 -3.45632 | opp_overlap 691318, overlap 691316 TATAAAAACAAAAAA GCCAGCAT CTGT GTGCTGGC TCTTTCCGTCTCTAT TERM 734 691337 - 691318 - T 100 -9.3 -5.98675 | opp_overlap 691318 691316 TATAAAAACAAAAAA GCCAGCA TCTGTG TGCTGGC TCTTTCCGTCTCTAT YPTS_0624 692079 - 691363 - | two component transcriptional regulator YPTS_0625 692637 - 692744 + | hypothetical protein TERM 735 693112 - 693090 - f 100 -12.7 -5.57729 | opp_overlap 693090 AAACAACAGAAAAAA GCCCGCACC TAGAC AGTGCGGGC TTTTTTTTTCAATCA TERM 736 693090 - 693112 + F 100 -12 -6.11644 | opp_overlap 693090 AAACAACAGAAAAAA GCCCGCAC CTAGACA GTGCGGGC TTTTTTTTTCAATCA YPTS_0626 693183 - 695642 + | aspartate kinase TERM 737 696130 - 696144 + G 71 -6.4 -4.15508 | overlap 696131 GGAAGGTTATATCAG TCAGGA TGT TCCTGG TTTTAGCGATTGGTT YPTS_0627 695645 - 696574 + | homoserine kinase TERM 738 696744 - 696759 + G 75 -5.4 -4.73613 | gap 1 TTGTGACCCGTAGTA GCCG-CA TTC TGTCGGC TTTTATTGGTAGTGA TERM 739 697815 - 697843 + G 73 -4.6 -4.74801 | TGCTATCCCATGATT TGCCCGCA GACTTTGCACAAA TGCGGGCA TTTTTGATGGCATTG YPTS_0628 696578 - 697867 + | threonine synthase YPTS_0629 699460 - 698684 - | hypothetical protein TERM 740 700637 - 700620 - g 91 -7 -5.32882 | CAGTACTACAAAAAA CACGGT TATAAG ACCGTG GTGATGGGTGCAAGC YPTS_0630 699975 - 700928 + | transaldolase TERM 741 700986 - 700971 - f 74 -10.4 -2.73364 | opp_overlap 700971 TCGGTATCTGAATGA GGTGGC GCAA GCCACC TTTTTTATTGCCGAT TERM 742 700971 - 700986 + F 100 -10.4 -5.45652 | opp_overlap 700971 TCGGTATCTGAATGA GGTGGC GCAA GCCACC TTTTTTATTGCCGAT YPTS_0631 701216 - 701803 + | molybdenum cofactor synthesis domain-containing protein TERM 743 703126 - 703137 + G 81 -5.8 -4.84363 | opp_overlap 703125 CTTTCTCGTACAATG TGGC CTAT GCCA TTTTTGGTGGTTTAA YPTS_0632 701931 - 703310 + | major facilitator transporter TERM 744 703332 - 703374 + T 84 -5.3 -5.38951 | gap 2, opp_overlap 703338, overlap 703333 703338 TAAGTCAATTCACTT TA-AAAAGCCCATAA-TTATT ATC AATAAATTATGGGCTTTTATC TTTTTTCTATACCTT TERM 745 703333 - 703372 + T 100 -10.4 -4.31943 | gap 1, opp_overlap 703338, overlap 703332 703338 AAGTCAATTCACTTT AAAAAGCCCATAA-TTATT ATC AATAAATTATGGGCTTTTA TCTTTTTTCTATACC TERM 746 703338 - 703367 + T 100 -10.3 -5.08086 | gap 1, opp_overlap 703338, overlap 703333 703332 AATTCACTTTAAAAA GCCCATAA-TTATT ATC AATAAATTATGGGC TTTTATCTTTTTTCT TERM 747 703367 - 703338 - T 100 -10.3 -4.63184 | gap 1, opp_overlap 703338 703333 703332 AATTCACTTTAAAAA GCCCATAA-TTATT ATC AATAAATTATGGGC TTTTATCTTTTTTCT YPTS_0633 705844 - 703388 - | GCN5-related N-acetyltransferase TERM 748 706102 - 706064 - R 84 -9.8 -3.85165 | opp_overlap 706064 706067, overlap 706065 706067 GAGTGGAAAGTGAAA TCACCTTGAATATTAATT TTT ACCTAATATTCAAGGTGC TGTGTAATATAAGCT TERM 749 706101 - 706065 - R 100 -13.3 -2.90617 | opp_overlap 706064 706067, overlap 706064 706067 AGTGGAAAGTGAAAT CACCTTGAATATTAATT TTT ACCTAATATTCAAGGTG CTGTGTAATATAAGC TERM 750 706099 - 706067 - R 73 -10.1 -3.00017 | opp_overlap 706067 706064, overlap 706065 706064 TGGAAAGTGAAATCA CCTTGAATATTAATT TTT ACCTAATATTCAAGG TGCTGTGTAATATAA YPTS_0634 706746 - 706135 - | GPR1/FUN34/yaaH family protein TERM 751 706549 - 706566 + g 93 -7.7 -5.31275 | opp_overlap 706543 AGAGGTAAATGCGGT GGCAGCA AATG TGTTGCC TTTTTTATACTCCAA TERM 752 706672 - 706658 - G 73 -7.1 -4.16842 | CTCAGTGGGAAGAAA CCTGC GTTGT GCAGG TTGAGCAAGACGGTA TERM 753 706719 - 706707 - G 75 -10.5 -3.39668 | overlap 706699 TCCCAAAGCCCATAA GGCCC AAT GGGCC AGGATTCGCCAACTT TERM 754 707392 - 707363 - g 70 -7.9 -3.82084 | TTCCAAGACGAAGAA GCACAGCGTGATA AAGA TATCATGCCGTAC AAAATTATTGCTGCA TERM 755 707458 - 707448 - g 73 -2.4 -5.12707 | overlap 707439 707449 707450 TTAAAGGCCAAAAAA TGGC ACC GCCG CAGATCTCTGCTGAA YPTS_0635 707120 - 709030 + | chaperone protein DnaK TERM 756 709116 - 709079 - f 100 -15.5 -3.53224 | opp_overlap 709077, overlap 709082 TACTGTTGCTGGAAA CCAGCACGGGCGTCGAG GAAA CTCTACGCCCGTGCACG CATGTTAAGGGTAGG TERM 757 709113 - 709082 - f 100 -20.2 -2.90496 | opp_overlap 709077, overlap 709079 TGTTGCTGGAAACCA GCACGGGCGTCGAG GAAA CTCTACGCCCGTGC ACGCATGTTAAGGGT TERM 758 710231 - 710218 - g 80 -3.1 -5.40072 | TGCTGGTGAAAAAAA TAGCC CGCG AGCTA AAAGTTTCTTAGATG YPTS_0636 709142 - 710281 + | chaperone protein DnaJ TERM 759 710321 - 710362 + F 74 -9.7 -3.12803 | opp_overlap 710323 710332, overlap 710323 710332 710357 CAGCTAATAAAGTAA AATGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTATC TGTTGAATATGGATA TERM 760 710323 - 710360 + F 93 -12.3 -3.12142 | opp_overlap 710323 710332, overlap 710321 710332 710357 GCTAATAAAGTAAAA TGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTA TCTGTTGAATATGGA TERM 761 710360 - 710323 - f 75 -5.7 -4.67942 | opp_overlap 710323 710321 710332 710357, overlap 710332 GCTAATAAAGTAAAA TGAAAGAAATCCTCGGT TGAT ATCGAGGATTTTTTTTA TCTGTTGAATATGGA TERM 762 710332 - 710351 + F 100 -8.6 -6.08563 | opp_overlap 710323 710332, overlap 710323 710321 GTAAAATGAAAGAAA TCCTCGGT TGAT ATCGAGGA TTTTTTTTATCTGTT TERM 763 710351 - 710332 - f 77 -6.4 -4.67692 | opp_overlap 710332 710323 710321, overlap 710323 GTAAAATGAAAGAAA TCCTCGGT TGAT ATCGAGGA TTTTTTTTATCTGTT YPTS_0637 710524 - 711708 + | Na+/H+ antiporter NhaA TERM 764 711732 - 711761 + F 100 -13.7 -3.2048 | CACGTTATTGATTCA GCATTGCTGCC CAAGCGCA GGCAGCAATGC TTGGTGGAATTTAAA YPTS_0638 711838 - 712737 + | LysR family transcriptional regulator TERM 765 712846 - 712817 - T 100 -14.5 -3.08344 | opp_overlap 712823 712825, overlap 712825 GCCAAACGATAGAGA TAAAAAAACCGGC CTAA GCCGGTCTTTTTA CAAGCACTCAATGTC TERM 766 712823 - 712840 + T 76 -6.9 -4.57073 | opp_overlap 712817 712825, overlap 712825 CGATAGAGATAAAAA AACCGGC CTAA GCCGGTC TTTTTACAAGCACTC TERM 767 712825 - 712838 + T 81 -9.5 -3.90048 | opp_overlap 712825 712817, overlap 712823 ATAGAGATAAAAAAA CCGGC CTAA GCCGG TCTTTTTACAAGCAC TERM 768 712838 - 712825 - T 100 -9.5 -5.77988 | opp_overlap 712823 712825, overlap 712817 ATAGAGATAAAAAAA CCGGC CTAA GCCGG TCTTTTTACAAGCAC YPTS_0639 713131 - 712868 - | ribosomal protein S20 TERM 769 712969 - 712984 + g 75 -6.2 -4.62783 | GATCCACGATTGGTT GCATTT CATT AAATGC TTTTTGCGCTGCGTC TERM 770 713922 - 713949 + G 85 -10.6 -4.15565 | gap 1 CGGTAGGTGATGACT TCCGCTTTGGCGC AGG GCGCCAGGG-GGA TTTTCAACTACTGCA YPTS_0640 713546 - 714484 + | riboflavin biosynthesis protein RibF YPTS_0641 714516 - 717332 + | isoleucyl-tRNA synthetase TERM 771 717442 - 717462 + G 80 -4.7 -5.03314 | overlap 717443 CCACTTTGCTCTGTA TGAATCGGT GCC ACTGATTCC TTTTTTCAACCTAAC YPTS_0642 717332 - 717841 + | lipoprotein signal peptidase YPTS_0643 717843 - 718367 + | peptidylprolyl isomerase FKBP-type YPTS_0644 718348 - 719301 + | hydroxymethylbutenyl pyrophosphate reductase TERM 772 719361 - 719378 + G 100 -8.4 -5.55769 | opp_overlap 719361 TATTTACTGACGAAA GCAGCC CTTTGC GGCTGC TTTTTTATTGTGCCC TERM 773 719378 - 719361 - g 71 -8.4 -3.767 | opp_overlap 719361 TATTTACTGACGAAA GCAGCC CTTTGC GGCTGC TTTTTTATTGTGCCC TERM 774 719400 - 719418 + G 100 -16 -3.18274 | opp_overlap 719400 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTTGGAGTACG TERM 775 719418 - 719400 - g 100 -16 -4.37092 | opp_overlap 719400 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTTGGAGTACG YPTS_0645 719343 - 719555 + | hypothetical protein YPTS_0646 719769 - 720590 + | dihydrodipicolinate reductase TERM 776 720603 - 720620 + F 82 -5.6 -4.93296 | opp_overlap 720603 TAATGCTTTAAATTA CAACCA GTGATG TGGTTG TTTTTATCATAATCA TERM 777 720646 - 720664 + F 100 -8.2 -5.80951 | opp_overlap 720646 720644 AATCATTTGATAATA GGGCAATA TTT TATTGTCC TTTTTTATTTTAAAT TERM 778 721803 - 721782 - g 74 -10.9 -3.05596 | CATCTTCTTATCCAA TGGTCCTGG GGAT CCAGAACCA TGCGATTACGCGATC YPTS_0647 721063 - 722238 + | carbamoyl-phosphate synthase, small subunit TERM 779 722297 - 722279 - g 73 -2.2 -5.07275 | opp_overlap 722289 722291 722296, overlap 722283 GTACAGATATAAAAA GCATCCTG ATT CTGGGCGC AGGCCCGATTGTTAT TERM 780 723212 - 723193 - g 74 -10 -3.53444 | GCACTGGCCTCTAAA GCAACCGG TTTC CCGATTGC CAAGATTGCCGCCAA TERM 781 723221 - 723235 + G 75 -11.4 -2.52896 | CGATTGCCAAGATTG CCGCCA AAC TGGCGG TCGGTTACACACTGG YPTS_0648 722254 - 725487 + | carbamoyl-phosphate synthase, large subunit TERM 782 725540 - 725513 - T 79 -8.4 -4.07885 | opp_overlap 725517, overlap 725517 CATCCGTGGCGAAAA TCAAGGGCGATG GCAA CATCGCCCTTTT TACGTTCGCAGCTTA TERM 783 725536 - 725517 - T 100 -13.6 -3.66908 | opp_overlap 725517, overlap 725513 CGTGGCGAAAATCAA GGGCGATG GCAA CATCGCCC TTTTTACGTTCGCAG TERM 784 725517 - 725536 + T 100 -13.6 -4.74103 | opp_overlap 725517 725513 CGTGGCGAAAATCAA GGGCGATG GCAA CATCGCCC TTTTTACGTTCGCAG YPTS_0649 726381 - 725713 - | lysine exporter protein LysE/YggA YPTS_0650 726642 - 727442 + | hypothetical protein YPTS_0651 727439 - 727903 + | hypothetical protein TERM 785 728125 - 728176 + G 78 -11 -3.37796 | GCTATGCCATGGCAT TTACCGGCTGATTTAGCGTGGTTC AAAC GTAACACGTTAAATAAACCGGTAA TTATGGGTCGTAAGA YPTS_0652 728053 - 728535 + | dihydrofolate reductase region TERM 786 728596 - 728561 - f 74 -9.9 -3.13368 | gap 1, opp_overlap 728566, overlap 728559 728566 728568 ACATCAAAACAATTA GCATACAGGCCCATTA GGTAA TAATGGGCCTGTTT-C ATTTAGAAAAATAAA TERM 787 728566 - 728592 + F 100 -15.3 -4.05788 | opp_overlap 728561 728559 728566 728568 AAAACAATTAGCATA CAGGCCCATTA GGTAA TAATGGGCCTG TTTCATTTAGAAAAA TERM 788 728592 - 728566 - f 100 -15.3 -2.91094 | opp_overlap 728566, overlap 728561 728559 728568 AAAACAATTAGCATA CAGGCCCATTA GGTAA TAATGGGCCTG TTTCATTTAGAAAAA TERM 789 728590 - 728568 - f 86 -12.1 -2.9913 | opp_overlap 728566, overlap 728566 728561 728559 AACAATTAGCATACA GGCCCATTA GGTAA TAATGGGCC TGTTTCATTTAGAAA YPTS_0653 729374 - 729838 + | hypothetical protein TERM 790 729890 - 729861 - T 77 -10.9 -2.78706 | opp_overlap 729866, overlap 729866 AATTATAGGTGAAAT CTAAAGACGCATA AGCT CATGCGTCTTTAA TTAGCGTCTTTACAA TERM 791 729866 - 729885 + T 74 -7.9 -3.93026 | opp_overlap 729866 729861 TAGGTGAAATCTAAA GACGCAT AAGCTC ATGCGTC TTTAATTAGCGTCTT TERM 792 729885 - 729866 - T 75 -8.6 -3.85165 | opp_overlap 729866, overlap 729861 TAGGTGAAATCTAAA GACGCATA AGCT CATGCGTC TTTAATTAGCGTCTT YPTS_0654 730797 - 729928 - | bis(5'nucleosyl)-tetraphosphatase, ApaH YPTS_0655 731191 - 730814 - | ApaG domain-containing protein YPTS_0656 732023 - 731205 - | dimethyladenosine transferase YPTS_0657 733011 - 732016 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 793 732936 - 732906 - G 88 -14.1 -2.62396 | GATCCGCGCAGACTA CCAGCTCAACAGG CCAAT CCTGTTGAGCCAG AGCGATGGCTAAATC YPTS_0658 734299 - 732995 - | SurA domain-containing protein YPTS_0659 736619 - 734367 - | organic solvent tolerance protein YPTS_0660 736894 - 737727 + | heat shock protein DnaJ domain-containing protein YPTS_0661 738664 - 738044 - | pseudouridine synthase TERM 794 738130 - 738142 + g 70 -7.7 -3.81339 | overlap 738135 CATGTAGCTGCAGCC GCGAT GCC ATCGC TTTGGCTTCTGGATG TERM 795 739731 - 739757 + r 100 -15.4 -3.16881 | opp_overlap 739733 ATATATTTGGGGTAA TAGTGTCCATTA AGA TAATGGACACTA TTCGTCAGATACGTG TERM 796 739755 - 739733 - R 100 -13.6 -3.02263 | opp_overlap 739731 ATATTTGGGGTAATA GTGTCCATTA AGA TAATGGACAC TATTCGTCAGATACG YPTS_0662 740630 - 739887 - | hypothetical protein YPTS_0663 740987 - 741973 + | ImpA domain-containing protein YPTS_0664 741984 - 742544 + | type VI secretion protein TERM 797 742676 - 742690 + G 75 -11.4 -2.52015 | overlap 742675 TCCGCCACAGTGCGC CGTGCC ATA GGCACG CTTGCTGCGTATGCC TERM 798 743320 - 743334 + G 71 -4.3 -4.67038 | opp_overlap 743320, overlap 743315 GTATGGTGCCAAAAA TCATC CTATT GATGA TTTTGCTTTTGAAGA YPTS_0665 742544 - 744055 + | EvpB family type VI secretion protein TERM 799 744078 - 744053 - f 73 -5.5 -4.74598 | gap 1, opp_overlap 744056 744061 GAAAGCGAAAAGAAA TAAGCGCTGTGA ATA TCACT-CGCTTA TTAGAGGGGGAATAT TERM 800 744168 - 744152 - f 76 -10.9 -2.72991 | GTACATTTTTAATGA GGCAACT TTG AGTTGCC GAATACTGATTTAAC YPTS_0666 744218 - 744736 + | hypothetical protein TERM 801 744781 - 744753 - f 78 -10.4 -3.26546 | opp_overlap 744755 TCAGAAATGCATTAA GACTGCTCTC GCGAGTTAG GAGAGCAGTC TTCCAAACTGGATTG YPTS_0667 744810 - 745253 + | type VI secretion system lysozyme-related protein YPTS_0668 745286 - 747130 + | type VI secretion protein YPTS_0669 747123 - 748106 + | type VI secretion protein YPTS_0670 748124 - 750712 + | type VI secretion ATPase YPTS_0671 750816 - 753164 + | type VI secretion system Vgr family protein YPTS_0672 753177 - 755396 + | pentapeptide repeat-containing protein TERM 802 755484 - 755524 + G 83 -6.9 -4.88795 | opp_overlap 755493 GATTATTGGCAGGCA CTTTACACAGCGTCAGTTG CAG CAGTTAACGCTGTCTGAGG TTTATTTTATTCAAT YPTS_0673 755422 - 756525 + | pentapeptide repeat-containing protein YPTS_0674 756518 - 757135 + | hypothetical protein YPTS_0675 757141 - 757506 + | hypothetical protein TERM 803 757720 - 757703 - g 80 -9.1 -4.18488 | opp_overlap 757705 ATTGAGCTGAATAAA GAGGGGT GGTC ACCCCCC GGTTTGTATCAGGGG YPTS_0676 757499 - 757990 + | putative lipoprotein TERM 804 758899 - 758887 - g 71 -4.8 -4.65895 | opp_overlap 758896 GTGTTGATGCAAAAA CAGG TACAC CCTG AGCAGTTGTTCCAAT YPTS_0677 758110 - 759465 + | type VI secretion protein YPTS_0678 759462 - 761072 + | DotU family type IV/VI secretion system protein YPTS_0679 761081 - 764575 + | type VI secretion protein IcmF YPTS_0680 764597 - 764950 + | hypothetical protein TERM 805 764996 - 764974 - f 100 -13.5 -5.71712 | CGTCAGACAAAAAAA TATCCGGGG GAATG CCCCGGATA TCAGACTGCTGACAA TERM 806 765085 - 765059 - f 70 -7.2 -3.82218 | gap 1, opp_overlap 765068, overlap 765060 AGGCAGAGGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG YPTS_0681 765098 - 765244 + | hypothetical protein YPTS_0682 768112 - 765206 - | SNF2-related protein TERM 807 765730 - 765708 - G 71 -6.3 -4.16016 | gap 1 TTATTTTTCAATAAA GACACCGCGC AACT GC-CGGTATC GCCAGACAGGATCAA TERM 808 767765 - 767727 - G 91 -11.7 -4.08216 | opp_overlap 767738 767739 TTACGGGCGCGAAAA CGCAGGGCAAAGCGATC CATGC GATCGATTTGACCGGCG AATAAGCGATCCTGT YPTS_0683 770942 - 768573 - | DNA polymerase B region TERM 809 769428 - 769402 - G 75 -3.7 -5.1101 | gap 2, overlap 769403 CGAGGATCGAAAAAA CGGCAGCCGCTGG AAC CCAGC-AC-GCCA TAAAAGGCATTCATA TERM 810 770124 - 770113 - G 71 -7.2 -4.09805 | CCATCAATAATTAAA CGCC CGGC GGCG GAAGCAAAGAAATGC TERM 811 771574 - 771597 + G 75 -8.1 -4.2074 | CCTTACCCAGTGTGA TTGGTGGCC TGACAT GGCCGCCGA TTTATCTCTTCCCCG YPTS_0684 771138 - 771905 + | SNARE associated Golgi protein YPTS_0685 772684 - 771974 - | ABC transporter ATP-binding protein YPTS_0686 774278 - 772671 - | thiamine ABC transporter, inner membrane subunit TERM 812 772899 - 772866 - G 79 -10.9 -3.58905 | opp_overlap 772865 772864, overlap 772868 772878 ATCGCCGATAGATAA CACACTGGCAAAGGC CAGC GCCTGAGCCAGTGGG CGTTTCAGGGCGCGT TERM 813 772897 - 772868 - G 85 -12.1 -3.37198 | opp_overlap 772865 772864, overlap 772866 772878 CGCCGATAGATAACA CACTGGCAAAGGC CAGC GCCTGAGCCAGTG GGCGTTTCAGGGCGC TERM 814 774248 - 774231 - G 73 -10.5 -3.14931 | CCCAGCGGCCAGCAA CCCCGGC CATA GCCAGGG CGCGATTAACGGCTG YPTS_0687 775330 - 774254 - | thiamine ABC transporter, periplasmic binding protein TERM 815 774938 - 774960 + g 73 -7 -4.30987 | opp_overlap 774937, overlap 774934 GTTACGGGTATCAAC CTGGCTTG GGGTAAA CAAGCCGG TTTGTTCTGCCGCCT TERM 816 775009 - 775019 + g 73 -4.6 -4.75174 | ACCCTAAAATCACAT CGGC CTG GCTG TTTTTACCTTCCATC YPTS_0688 775417 - 775509 + | hypothetical protein YPTS_0689 775892 - 777394 + | hypothetical protein TERM 817 777533 - 777514 - T 100 -12.2 -3.89695 | opp_overlap 777516 CGTGTATAAAGAGAA CAGCTAGC GAGC GCTAGCTG TTAAAATACTTAATG YPTS_0690 777770 - 777639 - | putative transposase YPTS_0691 778174 - 777797 - | IS1400 transposase protein B TERM 818 778211 - 778199 - R 80 -3.5 -5.37043 | ATCGCATATAAAAAA TTTTA CAA TAAAA AATGAGAGTATTTAA YPTS_0692 779978 - 778317 - | extracellular solute-binding protein TERM 819 780157 - 780178 + H 100 -8.7 -5.93252 | TGGTGTTTTTCACCA GCCAGTAGG TTTT TCTGCTGGC TTTTTTCTTTTTCCC TERM 820 780589 - 780600 + H 71 -4.4 -4.84359 | CACCATTATGATTAT GCTA ATAA TAGC TTTTTCTGGCGCTGG TERM 821 781151 - 781161 + G 79 -3.2 -5.31855 | GCTGATGTTTAGCAT TGCC GCC GGTA TTTTTGTTATTAGTG YPTS_0693 780624 - 781805 + | sugar efflux transporter TERM 822 781905 - 781935 + G 82 -12 -3.20896 | gap 1, overlap 781903 781902 AGTTAAACGTGTTAC TTGTTGG-GCCGG TACGAC CCGGCACCAACAA TCTATTAGTTACTTA YPTS_0694 781898 - 782068 + | hypothetical protein YPTS_0695 782667 - 782065 - | 3-isopropylmalate dehydratase, small subunit YPTS_0696 784112 - 782682 - | 3-isopropylmalate dehydratase, large subunit TERM 823 783613 - 783625 + g 74 -9.1 -3.64703 | ATGGTTTTGGCTCGT CCCTG CTT CAGGG TTTGGGTCGCCAACA YPTS_0697 785205 - 784114 - | 3-isopropylmalate dehydrogenase YPTS_0698 786770 - 785208 - | 2-isopropylmalate synthase TERM 824 786815 - 786834 + r 86 -10.6 -3.83155 | opp_overlap 786816, overlap 786816 AGCGGATAAAAAAAA ACCCGCGC ATTT GCGCGGGC TTGTTAATCTTGATG TERM 825 786833 - 786816 - R 100 -14.1 -6.22802 | opp_overlap 786815 786816 GCGGATAAAAAAAAA CCCGCGC ATTT GCGCGGG CTTGTTAATCTTGAT TERM 826 786816 - 786833 + r 95 -14.1 -2.8917 | opp_overlap 786816, overlap 786815 GCGGATAAAAAAAAA CCCGCGC ATTT GCGCGGG CTTGTTAATCTTGAT TERM 827 787106 - 787126 + r 81 -4 -5.4148 | overlap 787109 TTTTACAGAGTATTA TCCTGAGT AAGTC ACTCATGA TTTTTTAATTGTTTG YPTS_0699 787308 - 787117 - | hypothetical protein TERM 828 787598 - 787616 + H 72 -6.2 -4.35885 | opp_overlap 787591 787598 787597, overlap 787591 ATTATAATTAAAATT TTTATATT ACT AATATAAA TTTGTTGTGGTGGCT TERM 829 788668 - 788652 - g 79 -2.2 -5.39721 | opp_overlap 788652 TCATTAGATAAAAAA GGGTCA TTCAG TGAGCC TTATTACGACTCAAC YPTS_0700 787986 - 788942 + | LysR family transcriptional regulator YPTS_0701 789490 - 791295 + | AMP-dependent synthetase and ligase TERM 830 791314 - 791353 + F 100 -13.6 -3.5362 | overlap 791312 791316 GTTCACCATTCCTCC CCGCAGTGACCGGTGTTA AGTC TCACACTGGTCGCTGCTG TCTTTCTGACCGTTC TERM 831 791316 - 791351 + F 100 -14.8 -3.33798 | overlap 791314 791312 TCACCATTCCTCCCC GCAGTGACCGGTGTTA AGTC TCACACTGGTCGCTGC TGTCTTTCTGACCGT TERM 832 791686 - 791672 - f 75 -5.6 -4.64159 | opp_overlap 791674, overlap 791674 ACAAATAAGAATAAA GAGGCG TTG CGCCTT TCCTACAGAATATCG TERM 833 791684 - 791674 - f 75 -8.2 -3.90009 | opp_overlap 791674, overlap 791672 AAATAAGAATAAAGA GGCG TTG CGCC TTTCCTACAGAATAT TERM 834 791674 - 791684 + F 73 -8.2 -3.73402 | opp_overlap 791674 791672 AAATAAGAATAAAGA GGCG TTG CGCC TTTCCTACAGAATAT TERM 835 792203 - 792226 + G 78 -11 -3.36492 | gap 1 CCTTTTATCTGGCAT CCACTGG-CCG TCC CGGTCCGGTGG TTATCGACTTGCCAA YPTS_0702 791755 - 793482 + | acetolactate synthase, large subunit, biosynthetic type YPTS_0703 793485 - 793979 + | acetolactate synthase, small subunit TERM 836 794008 - 794028 + F 100 -13.3 -6.25741 | CGCTCTAATGATCGG GCTCAGCGC ATA GCGTTGAGC TTTTTTTTCTTATTT TERM 837 794398 - 794411 + F 74 -6.7 -4.33165 | overlap 794391 GGATGCTGGCTCTCG GCAGA GCGC TCTGC TTTTCATCACTTTAC TERM 838 794464 - 794480 + G 71 -9.3 -3.53012 | opp_overlap 794463 GAAACTGGATGAGAT CGCGCGC CTT GCGGGCG TTTCGCGCACAACGG YPTS_0704 794447 - 795457 + | LacI family transcription regulator TERM 839 795489 - 795472 - T 89 -11.3 -3.47322 | opp_overlap 795472 GTTCACTATAACGAA TCAGGGC ACCC GCCCTGA TTTTGATTGCTGACA TERM 840 795472 - 795489 + T 100 -11.3 -4.45544 | opp_overlap 795472 GTTCACTATAACGAA TCAGGGC ACCC GCCCTGA TTTTGATTGCTGACA YPTS_0705 796028 - 795588 - | hypothetical protein TERM 841 795649 - 795637 - G 82 -5.5 -5.09173 | CAATATTCCAAAAAA TAGCC GTA GGCCA CCCCCATAACCATTG TERM 842 796477 - 796451 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 796460, overlap 796452 796467 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 843 796478 - 796452 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 796460, overlap 796451 796467 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 844 797333 - 797353 + G 70 -7.6 -3.92324 | overlap 797334 GTCGAGCATGAACCC TGCTGAAC GTCGA GTTCAGCG TTTGCTGTTAGGGCA YPTS_0706 797130 - 797588 + | MraZ protein YPTS_0707 797591 - 798553 + | S-adenosyl-methyltransferase MraW YPTS_0708 798550 - 798867 + | cell division protein FtsL TERM 845 798977 - 798997 + G 71 -6.8 -4.31085 | opp_overlap 798978, overlap 798978 GCGTCAGGAAGAACA AGCCAGCT TTATT AGCTGGCG TTTTGCGTTGCTGTG TERM 846 798978 - 798996 + G 73 -10.3 -3.17928 | opp_overlap 798978, overlap 798977 CGTCAGGAAGAACAA GCCAGCT TTATT AGCTGGC GTTTTGCGTTGCTGT TERM 847 798996 - 798978 - g 85 -10.3 -3.99374 | opp_overlap 798978 798977 CGTCAGGAAGAACAA GCCAGCT TTATT AGCTGGC GTTTTGCGTTGCTGT YPTS_0709 798933 - 800696 + | penicillin-binding protein transpeptidase YPTS_0710 800683 - 802170 + | UDP-N-acetylmuramyl-tripeptide synthetase YPTS_0711 802167 - 803543 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase YPTS_0712 803537 - 804619 + | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 848 805460 - 805490 + G 79 -11.3 -3.55622 | gap 2 CCGCCCTGGCATTAG CT-GATG-CCGTGGG TAT CCCACGGGCATCCAG TTTGAAAGCCTTGAC TERM 849 805730 - 805749 + G 70 -10 -3.09933 | TCAAGGTCTACTGTT TTGGCCGC GATG GCGGTCAA TTGGCTGCGTTGCGC YPTS_0713 804622 - 805938 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase YPTS_0714 805938 - 807140 + | cell division protein FtsW TERM 850 807948 - 807965 + G 70 -2.5 -4.87786 | overlap 807949 807950 TCAGTGAAGTGGCGG CGGCGGG GCTA CCCGCGA TTTTTGTGCCATTCC YPTS_0715 807137 - 808207 + | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YPTS_0716 808318 - 809820 + | UDP-N-acetylmuramate--alanine ligase YPTS_0717 809813 - 810733 + | D-alanine--D-alanine ligase TERM 851 811108 - 811096 - g 75 -7.7 -4.30014 | CGGATGAACTTAAAA TCCAC CTG GTGGA GTACGTGCCCTTCGC YPTS_0718 810735 - 811562 + | polypeptide-transport-associated domain-containing protein YPTS_0719 811589 - 812845 + | cell division protein FtsA TERM 852 813200 - 813167 - g 70 -8.1 -3.85522 | overlap 813169 AATTCAGCAGAAGAA GACCGTGAAGCTCTG CGTG CAGCGCTTGACGGTG CGGATATGGTCTTTA TERM 853 813198 - 813169 - g 79 -10.7 -3.50808 | overlap 813167 TTCAGCAGAAGAAGA CCGTGAAGCTCTG CGTG CAGCGCTTGACGG TGCGGATATGGTCTT YPTS_0720 812918 - 814069 + | cell division protein FtsZ TERM 854 814248 - 814238 - g 82 -5.4 -5.04385 | CACACCGGTAAAAAA GTCA CGC TGAC AATGCGACCCGCGCC YPTS_0721 814166 - 815089 + | UDP-3-0-acyl N-acetylglucosamine deacetylase TERM 855 815269 - 815306 + T 80 -11.4 -2.71731 | opp_overlap 815259 AGCTACTTATCACGC TTGGTTGCGTTGGC ACCCTCTCCG GCCAACGCAGCCAG TCGTTCCAAGATCAC YPTS_0722 815780 - 815256 - | hypothetical protein YPTS_0723 815878 - 816342 + | secretion monitor family proten TERM 856 816509 - 816489 - g 71 -4.7 -4.65895 | overlap 816492 CGCCGCATGCAAAAA GTAGTTGAT GTC ATCAACCGC ATGGAACCTGATATT TERM 857 817536 - 817526 - g 77 -6.8 -4.50661 | opp_overlap 817526 817525 AATCCAGAATGAAAA CCAG ACA CTGG CTTCTATCACTTTCC YPTS_0724 816420 - 819134 + | preprotein translocase, SecA subunit TERM 858 819181 - 819164 - f 100 -12.7 -4.21343 | opp_overlap 819160 819176, overlap 819176 TGTAATATAGATAAA GGGCGGT TAAT ACCGCCC TGAGGTTATTGACAA TERM 859 819259 - 819285 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 819248, overlap 819254 819260 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 860 819260 - 819286 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 819248, overlap 819254 819259 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 861 819346 - 819370 + F 89 -7.2 -4.97888 | gap 1, overlap 819349 GGTTTGTCAGTAGTC TGA-GGGCGGT TAAT ACCGCCCTTTA TTTTTAAGTTTTTTT TERM 862 819349 - 819366 + F 100 -12.7 -4.92828 | overlap 819346 TTGTCAGTAGTCTGA GGGCGGT TAAT ACCGCCC TTTATTTTTAAGTTT YPTS_0725 819429 - 819815 + | mutator MutT protein TERM 863 819853 - 819880 + G 100 -9.3 -5.24129 | gap 1, opp_overlap 819857 CCTACTTTATTTTAA TGGAGCAAGACG TCCGT CGT-TTGCTCCA TTTTTTGTGCCCAGA TERM 864 819917 - 819899 - g 100 -16 -4.36914 | opp_overlap 819899 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 865 819899 - 819917 + G 100 -16 -3.07307 | opp_overlap 819899 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPTS_0726 819852 - 820040 + | hypothetical protein YPTS_0727 820030 - 820488 + | transposase IS200-family protein TERM 866 820566 - 820590 + T 88 -9.9 -4.15222 | opp_overlap 820569, overlap 820568 820569 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTAAAACACAT TERM 867 820568 - 820588 + T 100 -12.5 -3.6761 | opp_overlap 820569, overlap 820566 820569 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTAAAACAC TERM 868 820569 - 820587 + T 100 -16 -2.80244 | opp_overlap 820569, overlap 820568 820566 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAAAACA TERM 869 820587 - 820569 - T 100 -16 -4.8048 | opp_overlap 820568 820566 820569 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTAAAACA YPTS_0728 820884 - 820678 - | hypothetical protein TERM 870 820828 - 820805 - G 74 -3.1 -5.06414 | CGCTTGCAACAAAAA GGGCGAAAA GGGCTT TGTTCACCC CAGATAACGACTTTT YPTS_0729 821844 - 821092 - | hypothetical protein YPTS_0730 822461 - 821841 - | dephospho-CoA kinase YPTS_0731 822671 - 822471 - | hypothetical protein YPTS_0732 822757 - 823800 + | guanosine monophosphate reductase TERM 871 825175 - 825196 + G 79 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPTS_0733 823993 - 825201 + | transposase mutator type YPTS_0734 826678 - 825542 - | type II secretion system protein YPTS_0735 828276 - 826738 - | type II secretion system protein E YPTS_0736 828733 - 828269 - | type IV pilin PilA TERM 872 828763 - 828775 + r 79 -3.3 -5.30155 | overlap 828764 TGTTTAAGAAACTGG AGGCA GGG TGCCG TTTTTTAATTCATAC YPTS_0737 829844 - 828936 - | nicotinate-nucleotide pyrophosphorylase YPTS_0738 829957 - 830508 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 873 830948 - 830970 + G 73 -3.5 -4.94058 | overlap 830950 830964 GGTGCTGGTTTGGGG GATTTTGCA ATTAG TGCAAAATA TTTTGTTTGGCTTCC YPTS_0739 830781 - 831635 + | signaling modulator of AmpD, AmpE TERM 874 831997 - 831967 - T 100 -16.2 -3.02511 | opp_overlap 831962 GGTACTTTGTCAATA GCCTAGGCCAGCAC TAA GTGCTGGCCTAGAT AGGGTTAACTAGCTG YPTS_0740 833434 - 832037 - | amino acid permease-associated region TERM 875 832956 - 832936 - G 77 -4.7 -4.88405 | opp_overlap 832936 832939, overlap 832931 832948 AACCGCCAAATAAAA TCATCGCAA TAA TCGCGATCA CTTTAATGATGGCAA TERM 876 833230 - 833195 - G 71 -8.4 -3.72141 | gap 1, opp_overlap 833208 ATATTTATACGCAAA GTGGCTAAAGGAACCGG CTA CAGGTTC-TTCAACCAC CATTTCGCCTAGCTG YPTS_0741 833534 - 833427 - | hypothetical protein TERM 877 833983 - 834009 + H 71 -6.8 -4.08689 | overlap 833979 TTAGTTAAGTGTGAA TTTAAATTCAAA AAA TATGAATTTAAA TTTAATTATTAAATG TERM 878 834336 - 834359 + G 73 -9.6 -3.36273 | opp_overlap 834340 CCCAAACTATCAGAT GTAATCGAGC AGCA GCTCGAATAC TTGATCTTGGAAGGG YPTS_0742 834297 - 835061 + | GntR domain-containing protein YPTS_0743 835257 - 837920 + | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type TERM 879 838231 - 838201 - g 100 -8.9 -5.25772 | gap 1, overlap 838203 AAAGCAGAAGAAAAA CCGGCGGCGCCTGC TCAG GCAG-CGGCTCCGG CAGCCTCTGCGGCGA TERM 880 838535 - 838492 - g 75 -10.2 -3.44051 | gap 1, overlap 838493 838510 GCGCCAGCAGCAGAA GC-GGCTCCGGCTCAACAAGC CGC ACCTGTCGCGCCAGCGCCAGC CGCCGCACCTGCCGC YPTS_0744 837934 - 839508 + | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 881 839513 - 839537 + F 100 -17.2 -3.54743 | opp_overlap 839509, overlap 839492 839500 839516 TGGTGATGTAATCGC CAAGGCCGGC TTCGT GCCGGCCTTG TTGTGGTTACTGCTC TERM 882 839516 - 839534 + F 100 -13.1 -3.90241 | opp_overlap 839509, overlap 839492 839513 839500 TGATGTAATCGCCAA GGCCGGC TTCGT GCCGGCC TTGTTGTGGTTACTG TERM 883 840725 - 840735 + G 75 -5.4 -4.81551 | opp_overlap 840715 840725 GCAACTGCGCACCAA TGTG CCA CACA TTTTTGCTATCGGTG YPTS_0745 839814 - 841238 + | dihydrolipoamide dehydrogenase TERM 884 841310 - 841329 + F 100 -11.4 -6.09133 | opp_overlap 841299 841310 TAAATAAAAGTGAAA CGGTCCCT ACAT AGGGGCCG TTTTTTTTTAGCCTA TERM 885 841329 - 841310 - f 83 -9.2 -4.02396 | opp_overlap 841310, overlap 841299 TAAATAAAAGTGAAA CGGTCCCT ACAT AGGGGCCG TTTTTTTTTAGCCTA TERM 886 841920 - 841905 - g 91 -6.8 -5.2189 | overlap 841907 TGAATCATTAAAAAA TCCGCC TGCG GGCGAA GAAGAATTCCTATTA TERM 887 842197 - 842181 - g 73 -9.5 -3.30124 | GCTGATGTTCGATAA CTTCTAC GAC GTAGAAG ATAAAGCCAAAGCTG YPTS_0746 841798 - 844395 + | aconitate hydratase 2 TERM 888 844468 - 844448 - f 100 -13.9 -4.21194 | opp_overlap 844448 844466 TCGCATCAGCTAAAA CGGGGGGCC ATT GGCCTCCCG TTTCTATTTTAAAAA TERM 889 844448 - 844468 + F 100 -16.1 -4.45168 | opp_overlap 844448, overlap 844466 TCGCATCAGCTAAAA CGGGGGGCC ATT GGCCTCCCG TTTCTATTTTAAAAA YPTS_0747 844694 - 845053 + | hypothetical protein YPTS_0748 846065 - 845178 - | hypothetical protein TERM 890 845328 - 845351 + g 85 -5.2 -5.27477 | gap 1, opp_overlap 845327 CGTGAAATAGGATAG GGCCGCGACCA GTG TGG-CGTTGCC TTTTTTCATTGCGCT TERM 891 845521 - 845505 - G 85 -7.9 -4.7373 | opp_overlap 845513 GCAGGCGATTAAAAA CAGTGGC AGC GCCCCTG GCCCTTGGCTATATA YPTS_0749 846081 - 846233 + | hypothetical protein TERM 892 846429 - 846450 + T 89 -10.2 -3.94746 | GACGAGCCGTTTTTA GGTGATCG CCTGAA CGATCACC TTTAATTCCGTATCA YPTS_0750 847297 - 846503 - | S-adenosylmethionine decarboxylase proenzyme YPTS_0751 848265 - 847375 - | spermidine synthase TERM 893 848167 - 848177 + g 75 -3.2 -5.03314 | opp_overlap 848158 848157 AAAAATCACCAGGTC CTGA TGC TCGG TTTTTTCGCGGTACA YPTS_0752 848729 - 848382 - | hypothetical protein YPTS_0753 849046 - 850647 + | multicopper oxidase type 3 TERM 894 850652 - 850675 + F 100 -13.8 -5.24129 | overlap 850654 TCAGCGCCTGAGCCA CTCCCCGGTC GGTT GACCGGGGTG TTTTTTATAAAACCG TERM 895 850654 - 850673 + F 100 -15 -4.25873 | overlap 850652 AGCGCCTGAGCCACT CCCCGGTC GGTT GACCGGGG TGTTTTTTATAAAAC YPTS_0754 850858 - 851403 + | hypoxanthine phosphoribosyltransferase YPTS_0755 852586 - 851711 - | carbonic anhydrase TERM 896 851840 - 851854 + g 81 -7.8 -4.57341 | opp_overlap 851829 AATACCATATACCCA GCCGTG GAT CATGGC TTTTTGCCCGCGCTT YPTS_0756 852609 - 853535 + | ABC transporter related YPTS_0757 853532 - 854302 + | ABC-2 type transporter TERM 897 854827 - 854815 - g 91 -3.4 -5.75599 | TAAAGCACAAAAAAA CAAC GACAT GTTG GGCGATTTAAATAAG YPTS_0758 854504 - 855817 + | polysaccharide deacetylase YPTS_0759 856361 - 855981 - | aspartate 1-decarboxylase TERM 898 856647 - 856665 + r 78 -10.3 -3.29511 | GCTCATCGGCGGTCA CGGGTTC CGAGC GAACCCG TTATGGGGGAATGCC YPTS_0760 857626 - 856772 - | pantoate--beta-alanine ligase TERM 899 857478 - 857464 - G 74 -2.8 -5.1356 | opp_overlap 857476, overlap 857466 GCGGATTAACAAAAA TAGTCA CCA CGACCA CGTCAGCGCGGGTTT YPTS_0761 858511 - 857714 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase YPTS_0762 859259 - 858780 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YPTS_0763 860733 - 859267 - | poly(A) polymerase TERM 900 859822 - 859860 + g 71 -6.7 -4.22948 | opp_overlap 859824 AAAATTACGGGCAAT CAGTGGGAATAGCGGCT GGAAA AGCTGGTATTCGCACAG TTTTAAATAGGTTTT TERM 901 860690 - 860711 + g 78 -5.7 -4.66537 | GGCACTTTATCTTTA CGGGCCTTG TCAT CACGGACCG TTTTGTCTTCGCGGA YPTS_0764 862006 - 860822 - | glutamyl-tRNA synthetase class Ic TERM 902 862027 - 862069 + r 81 -10.7 -3.3676 | gap 1, opp_overlap 862033, overlap 862035 862060 GAAGGGGTCCAACAG T-TCAAACACGGTGCCGGAG AGGG CTCTGGCACCGTGTTACACA TTATGCCGTGTTACA TERM 903 862062 - 862033 - R 100 -17.9 -3.66803 | opp_overlap 862027 862035 862060 GTCCAACAGTTCAAA CACGGTGCCGGAG AGGG CTCTGGCACCGTG TTACACATTATGCCG TERM 904 862035 - 862060 + r 100 -16.9 -3.07233 | opp_overlap 862033, overlap 862027 CCAACAGTTCAAACA CGGTGCCGGAG AGGG CTCTGGCACCG TGTTACACATTATGC YPTS_0765 862552 - 862097 - | TraR/DksA family transcriptional regulator YPTS_0766 863603 - 862722 - | sugar fermentation stimulation protein TERM 905 863158 - 863169 + g 91 -4.4 -5.53288 | opp_overlap 863158 TTGTAACCAGATAAT TCAG CAAT CTGA TTTTTTTCAATTGCC YPTS_0767 864168 - 863593 - | 2'-5' RNA ligase YPTS_0768 864178 - 864333 + | hypothetical protein YPTS_0769 864323 - 866812 + | ATP-dependent helicase HrpB TERM 906 867912 - 867928 + G 70 -7.9 -3.80094 | GTGACCAAATCCGTG GCTTCCC GCT GGGTAGC TTGTATTACTTTGGC YPTS_0770 866921 - 869401 + | penicillin-binding protein 1B TERM 907 869424 - 869457 + F 100 -8.7 -5.95539 | overlap 869425 869426 GGTCAATAAAATGTG ACGGCGGGCGTGGTT TACA GACTGCGCCCGCCAA TTTTTTTCTTTGCGC TERM 908 869425 - 869456 + F 100 -12.2 -4.15696 | overlap 869424 869426 GTCAATAAAATGTGA CGGCGGGCGTGGTT TACA GACTGCGCCCGCCA ATTTTTTTCTTTGCG TERM 909 869426 - 869455 + F 100 -15.7 -3.07791 | overlap 869425 869424 TCAATAAAATGTGAC GGCGGGCGTGGTT TACA GACTGCGCCCGCC AATTTTTTTCTTTGC TERM 910 870482 - 870504 + G 75 -3.2 -5.12172 | overlap 870473 870486 GGCATTTTACCGCAC CCGGCTGGCG GTG CGCCGGTAAG TTTTGTTTATTAATG YPTS_0771 869723 - 870517 + | ABC transporter related YPTS_0772 870517 - 871569 + | periplasmic binding protein TERM 911 873517 - 873529 + G 79 -3.3 -5.20222 | TATTAGCGACATTTA TCGGG GCG CCCTA TTTTGTTTATTTGCT YPTS_0773 871566 - 873563 + | transport system permease protein TERM 912 873684 - 873667 - T 80 -9.9 -3.58343 | opp_overlap 873661 873660 GTCAGCAGTCTGAAA TCTCCTC CGGA GAGGAGA TTAGAGGTTATTGAC YPTS_0774 875217 - 873937 - | glutamate-1-semialdehyde-2,1-aminomutase TERM 913 874189 - 874156 - G 74 -9 -3.69934 | gap 2, opp_overlap 874156 874184 AAAGAATAGGCCAAA CATCCCACCGACGTGG TTAA CCAC--CAGTGGGATG TTCTCCTCTTTAGCG YPTS_0775 875312 - 875214 - | hypothetical protein TERM 914 876144 - 876163 + G 76 -11.4 -2.83522 | opp_overlap 876136, overlap 876143 TTAGCAACCGGTGCA GCCGCAGG GCTG TCTGCGGC ATTTAATGCCCCGCT TERM 915 876581 - 876596 + G 81 -7.6 -4.56117 | GGCAGCCGGTAATTT CAGCAT CGGC ATGCTG TTGTTTATTTTTATC YPTS_0776 875598 - 877034 + | chloride channel core YPTS_0777 877170 - 877514 + | iron-sulfur cluster assembly accessory protein TERM 916 877737 - 877760 + T 100 -8.8 -5.31275 | opp_overlap 877737 AGCATCGCTAAAAAA CCGTGACCAT GAGA ATGGCCGCGG TTTTTTATGCTCAAA TERM 917 877760 - 877737 - T 100 -8.8 -5.03715 | opp_overlap 877737 AGCATCGCTAAAAAA CCGTGACCAT GAGA ATGGCCGCGG TTTTTTATGCTCAAA YPTS_0778 878413 - 877799 - | hypothetical protein YPTS_0779 879255 - 878413 - | periplasmic binding protein YPTS_0780 879956 - 879255 - | purine phosphorylase family 1 YPTS_0781 880250 - 881770 + | deoxyguanosinetriphosphate triphosphohydrolase YPTS_0782 881968 - 883413 + | protease Do TERM 918 883511 - 883535 + T 100 -9.3 -5.15526 | TTCCATTTAGCTCAA GGGCACAGT TTATCTC GCTGTGCCC TTTTTGGTTTTCTAT YPTS_0783 886346 - 883572 - | multi-sensor hybrid histidine kinase YPTS_0784 886655 - 886780 + | hypothetical protein TERM 919 888214 - 888188 - g 73 -5 -4.68994 | ATTATCACTCAAAAA CAGCCAAACCCA AGC CGTGACTGGCTG AATCCTAACCTCGGT TERM 920 888639 - 888657 + G 72 -6 -4.36914 | GTTGCCAGCCGATCC CCGGTGAT CAA ATTATCGG TTTTATCACGCAAGG YPTS_0785 886790 - 889024 + | (p)ppGpp synthetase I, SpoT/RelA YPTS_0786 889245 - 890087 + | MazG family protein YPTS_0787 890299 - 891936 + | CTP synthase TERM 921 891951 - 891974 + F 95 -13.1 -3.02109 | AAATATTTGGTGGTA GGGGGCGGC TGAGAT GTCGCCCCC TCTGTCTGGAGTTTT YPTS_0788 892017 - 893312 + | enolase TERM 922 893407 - 893382 - f 74 -10.5 -2.68014 | opp_overlap 893388, overlap 893388 AACTAACTAATTAAT TAAAAACCCGC TTCG GCGGGTTTTTT TATGTGTTGATTTTG TERM 923 893388 - 893401 + F 100 -9.5 -5.80248 | opp_overlap 893382 893388 CTAATTAATTAAAAA CCCGC TTCG GCGGG TTTTTTTATGTGTTG TERM 924 893401 - 893388 - f 100 -9.5 -4.93547 | opp_overlap 893388, overlap 893382 CTAATTAATTAAAAA CCCGC TTCG GCGGG TTTTTTTATGTGTTG YPTS_0789 893688 - 894257 + | superoxide dismutase copper/zinc binding TERM 925 894297 - 894276 - f 86 -10.2 -3.74077 | opp_overlap 894276 TCTGATACAGTTAAA CTGGCTAC CCGAGC GTAGCCAG TTTGGTGGAGGCCGG TERM 926 894276 - 894297 + F 82 -10.2 -3.72576 | opp_overlap 894276 TCTGATACAGTTAAA CTGGCTAC CCGAGC GTAGCCAG TTTGGTGGAGGCCGG TERM 927 894413 - 894430 + G 82 -5.5 -5.13741 | AGGGCGAGGGTTATT TCACTGG CGTT CCAGCGA TTTTTGTTCGCTTGC YPTS_0790 894361 - 895032 + | radical SAM domain-containing protein YPTS_0791 895468 - 895109 - | queuosine biosynthesis protein QueD TERM 928 896855 - 896841 - g 74 -6.4 -4.431 | overlap 896843 896844 TATTGACGGACAAAA TATGCC ACT GGCACA GGCGCTGCTCAGTCA YPTS_0792 895861 - 897717 + | sulfite reductase (NADPH) flavoprotein, alpha chain YPTS_0793 897717 - 899447 + | sulfite reductase (NADPH) hemoprotein, beta-component YPTS_0794 899444 - 900178 + | phosphoadenosine phosphosulfate reductase TERM 929 900222 - 900202 - T 100 -14.7 -3.14931 | TCTATGGCTCATTAA GAGGGCGCT AAG AGCGCCCCC AGACTGCTGACAAAC TERM 930 900309 - 900283 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 900292, overlap 900284 900299 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 931 900310 - 900284 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 900292, overlap 900283 900299 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_0795 900828 - 900421 - | hypothetical protein TERM 932 900782 - 900800 + g 71 -7.4 -4.11216 | opp_overlap 900782 ATATCGGGGAAATAA CCGTCGAA TCC TTCAACGG TTTTGAAGATGAAAA TERM 933 900800 - 900782 - G 79 -9.6 -3.91984 | opp_overlap 900782 ATATCGGGGAAATAA CCGTCGAA TCC TTCAACGG TTTTGAAGATGAAAA YPTS_0796 901203 - 901003 - | YcfA family protein TERM 934 901221 - 901249 + H 100 -15.5 -3.1085 | GAACCCCCTGGTGAG CTACTTGTGGGTA TCA TACCTACAAGTAG TATTGAGTCAATTAG TERM 935 901333 - 901313 - g 85 -9.7 -4.37991 | opp_overlap 901312 901308 GAAAAACACGGAAAA GGGCGATCA TAA TGATCGTCC ATGCCTTGAATTTAT YPTS_0797 901227 - 901493 + | hypothetical protein TERM 936 902771 - 902781 + G 71 -8.2 -3.62096 | AAGTTGTGGCGCAAG CGGG GAT CCCG TTTCAGGTGGTACCG YPTS_0798 901816 - 903234 + | uroporphyrin-III C-methyltransferase TERM 937 903476 - 903502 + G 70 -8 -3.83844 | TATGAATTTCGCGAT CACACGGTCAAA GAG TTTGGCTGTGAG TTGTTGGTTCATCGC YPTS_0799 903245 - 904153 + | sulfate adenylyltransferase, small subunit TERM 938 905358 - 905343 - gf 71 -4.6 -4.56775 | overlap 905345 AGTGGCGGGTAAAAA GACCCG AGCG CGGGTT GAAAACATTCAATAT TERM 939 905356 - 905345 - gf 70 -7.2 -3.90048 | overlap 905343 TGGCGGGTAAAAAGA CCCG AGCG CGGG TTGAAAACATTCAAT YPTS_0800 904165 - 905682 + | sulfate adenylyltransferase, large subunit YPTS_0801 905621 - 906325 + | adenylylsulfate kinase YPTS_0802 906516 - 906833 + | hypothetical protein YPTS_0803 907146 - 907466 + | septum formation initiator YPTS_0804 907470 - 908195 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPTS_0805 908334 - 908822 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 940 909081 - 909067 - g 91 -11.4 -4.07885 | TATGCGGGGTTAAAA GACCGC CAT GCGGTC ACCGAACAGTGGTTT TERM 941 909798 - 909813 + G 77 -10.4 -3.54129 | TGAGCTGAGTTTCTG GCTCCC TGCG GGGAGC TTTGCGACCAGTGTA YPTS_0806 908833 - 909882 + | tRNA pseudouridine synthase D TruD TERM 942 910266 - 910281 + G 71 -6.8 -4.21631 | ATTATGATACGGCGG CGGCAG TGAC TTGCCG TTTATTACGTGCGTT YPTS_0807 909860 - 910624 + | stationary-phase survival protein SurE TERM 943 910695 - 910681 - g 79 -11.4 -3.22298 | GGTATTCACGACGAA CGCCTG TTA CAGGCG ATCGAAGCGGTACCG YPTS_0808 910618 - 911244 + | protein-L-isoaspartate O-methyltransferase TERM 944 911591 - 911608 + G 73 -5.5 -4.57474 | overlap 911593 AATACCTATACCGTT AAGCGTG GTGA CACGCTG TTTTATATCGCTTGG TERM 945 911593 - 911606 + G 70 -8.1 -3.89301 | overlap 911591 TACCTATACCGTTAA GCGTG GTGA CACGC TGTTTTATATCGCTT TERM 946 911900 - 911925 + G 78 -11.9 -3.01712 | opp_overlap 911886 ATGTTGCCATCATCT GGTGCGGTTGT CGCT ACAACAGCACC TGTTACCGCACCAAG YPTS_0809 911366 - 912349 + | peptidase M23 YPTS_0810 912404 - 913402 + | RpoD family RNA polymerase sigma factor TERM 947 913532 - 913505 - T 72 -7.1 -4.05193 | opp_overlap 913505 GATGAAACACAACAA CGGTGAACA GATAGATAAA TGTTCACCG TTTTTTTATGCCCTT TERM 948 913505 - 913532 + T 100 -7.1 -5.63504 | opp_overlap 913505 GATGAAACACAACAA CGGTGAACA GATAGATAAA TGTTCACCG TTTTTTTATGCCCTT TERM 949 913766 - 913737 - T 81 -9.3 -3.76607 | opp_overlap 913737 913739 GAACAGAGACGGAAA CCTGCGGCTAAAA ATGA TTTCAGCCGCGAG TTTTTAGCTTACACC TERM 950 913737 - 913766 + T 81 -7.1 -4.74103 | opp_overlap 913737, overlap 913739 GAACAGAGACGGAAA CCTGCGGCTAAAA ATGA TTTCAGCCGCGAG TTTTTAGCTTACACC YPTS_0811 916330 - 913775 - | DNA mismatch repair protein MutS TERM 951 915294 - 915312 + g 73 -8.8 -3.91897 | opp_overlap 915292 ATACGTTCTAAATCG CCCACTTG TCT CAAGGGGG TTTGTAACTCGGCGG TERM 952 916962 - 916944 - g 71 -6.6 -4.18351 | overlap 916948 AAAGCAAATCAGAAA TGAAGGGC ACT GCCCCGCA TCTGAGCTGAAAGAT TERM 953 916958 - 916948 - g 71 -8.2 -3.67022 | overlap 916944 CAAATCAGAAATGAA GGGC ACT GCCC CGCATCTGAGCTGAA YPTS_0812 916903 - 917037 + | hypothetical protein YPTS_0813 917666 - 917211 - | RpiB/LacA/LacB family sugar-phosphate isomerase TERM 954 917799 - 917823 + H 80 -10.1 -3.69364 | opp_overlap 917794 917804, overlap 917803 TAAAACCAAGTCTTT CAAAAGATCAC CAT GTGATCATTTG TTATATATATTCAAT TERM 955 917803 - 917819 + H 70 -5.1 -4.45484 | opp_overlap 917794 917804, overlap 917799 ACCAAGTCTTTCAAA AGATCAC CAT GTGATCA TTTGTTATATATATT TERM 956 917818 - 917804 - H 79 -8.6 -4.09739 | opp_overlap 917803 917799, overlap 917794 CCAAGTCTTTCAAAA GATCAC CAT GTGATC ATTTGTTATATATAT YPTS_0814 918149 - 919264 + | alcohol dehydrogenase YPTS_0815 919328 - 920098 + | short-chain dehydrogenase/reductase SDR TERM 957 920247 - 920236 - g 72 -5.8 -4.42619 | opp_overlap 920235 GAAGAGGCGATAAAA GGCT ATTT AGCC GCTTATCCACATTTT TERM 958 920397 - 920442 + G 73 -5.3 -4.58685 | overlap 920425 920426 TAAAAATATGCTGGA TGCCGTAGCGGTTGGTGAG ATCTTCTC CTCCCCGGCGGCTGGGGCA TTTTTAGAAGCGTTT YPTS_0816 920098 - 921186 + | Dak kinase YPTS_0817 921193 - 921867 + | dihydroxyacetone kinase, L subunit YPTS_0818 922959 - 921988 - | DeoR family transcriptional regulator TERM 959 922288 - 922306 + g 72 -6 -4.4773 | AGGAGTGAACCAGCC CAGCTCTA CCA TATAGCTG TTTTCGTTCATATCA TERM 960 923151 - 923165 + r 75 -2.2 -5.33131 | overlap 923132 AATCAGTAACTGGTC TTTAAT TTT GTTAAA TTTGTTTTTTTATTA TERM 961 923400 - 923376 - R 72 -6.3 -4.2558 | overlap 923377 923391 GATCCTTCATCAAAA TGCCAGGAGAG TAA CCCTACTGGCG GCAATGCTAATAGGC TERM 962 923399 - 923377 - R 74 -9.8 -3.15027 | overlap 923376 923391 ATCCTTCATCAAAAT GCCAGGAGAG TAA CCCTACTGGC GGCAATGCTAATAGG YPTS_0819 924803 - 923514 - | arsenical pump membrane protein TERM 963 924796 - 924785 - G 70 -2.2 -4.9218 | TAGTCAGGATAAAAA TAGC ACCA GCCA ACAACATAACGCCTC YPTS_0820 925229 - 924888 - | ArsR family transcriptional regulator YPTS_0821 925756 - 925493 - | hypothetical protein TERM 964 925988 - 926009 + r 86 -3.1 -5.69068 | opp_overlap 925992, overlap 925992 AAGCTGTAAAGTCAT TAATTTCAT CTCA ATGAATTTA TTTTTTATCTTTTTA YPTS_0822 926170 - 925967 - | hypothetical protein TERM 965 925992 - 926005 + g 80 -3.9 -5.19003 | opp_overlap 925992, overlap 925988 TGTAAAGTCATTAAT TTCAT CTCA ATGAA TTTATTTTTTATCTT YPTS_0823 927358 - 926594 - | extracellular solute-binding protein YPTS_0824 928808 - 927429 - | di-haem cytochrome c peroxidase YPTS_0825 929004 - 929120 + | hypothetical protein YPTS_0826 929295 - 929092 - | hypothetical protein YPTS_0827 929467 - 931563 + | TonB-dependent receptor TERM 966 931796 - 931774 - f 70 -7.7 -3.62255 | opp_overlap 931773, overlap 931770 TTCAAGAAGAACTAA CCGGCCTTT TATCC AAAGGCGGG CTGAATTGGAATTCA YPTS_0828 932005 - 933192 + | ShET2 enterotoxin domain-containing protein TERM 967 933379 - 933347 - T 100 -13.6 -3.08073 | opp_overlap 933356 933358, overlap 933357 AGCAGCGCTAATACA TCTGCAGAATGGAG GATAA CTTCATTCTGCAGA CAACCCCCGATGACG TERM 968 933455 - 933431 - T 82 -7.8 -4.4261 | gap 1, opp_overlap 933433, overlap 933432 933433 GGCCGAAGAGTAAAA CGTCCGCGCCA GAGA TGGCGCGG-CT TGAATGGCATTCAGG TERM 969 933454 - 933432 - T 86 -11.3 -3.25084 | gap 1, opp_overlap 933433, overlap 933431 933433 GCCGAAGAGTAAAAC GTCCGCGCCA GAGA TGGCGCGG-C TTGAATGGCATTCAG TERM 970 933454 - 933433 - T 79 -11.5 -2.54568 | opp_overlap 933433, overlap 933432 933431 CCGAAGAGTAAAACG TCCGCGCCA GAGA TGGCGCGGC TTGAATGGCATTCAG TERM 971 933433 - 933454 + T 84 -11.5 -3.07994 | opp_overlap 933432 933433 933431 CCGAAGAGTAAAACG TCCGCGCCA GAGA TGGCGCGGC TTGAATGGCATTCAG YPTS_0829 934317 - 933532 - | methionine aminopeptidase, type I YPTS_0830 934565 - 934314 - | hypothetical protein TERM 972 934679 - 934648 - R 100 -10.2 -4.36595 | opp_overlap 934648, overlap 934676 CACTGAAACGGAAAA GGCCTGAGCTCC GTGAATGA AGAACTCAGGCC TTGATAGCCGCTTAA YPTS_0831 936391 - 934748 - | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit TERM 973 934937 - 934921 - G 78 -11.5 -3.01712 | TGTTTTGCGCCAATA CGGCGGC TGG GCCACCG ATGCTGCCCAGATAG TERM 974 936024 - 936040 + g 75 -3.6 -5.03715 | overlap 936026 GCATCGTTACCCCCA GTCCAG ACCCG CTGGCC TTTTTTGCCCATGAT TERM 975 936650 - 936673 + r 72 -9.6 -3.09823 | opp_overlap 936646, overlap 936644 GGCTTAAGCGACGGT TCCACCCTCT TTAT AAAGGGTGGA TCTCATTTTCCGCAC YPTS_0832 938301 - 936805 - | carbohydrate kinase FGGY YPTS_0833 939193 - 938312 - | hexulose-6-phosphate isomerase TERM 976 939146 - 939160 + g 74 -4.2 -4.87807 | TTCGACCCAACTGGT GCCC GCAGGTA GGGC TTTTTCGTATATTCC TERM 977 939267 - 939249 - R 72 -7.4 -4.0641 | opp_overlap 939232 GTTTATCTACATAAA CAGTTAGC TGC GCTCACTG GAATCCCAATCACTT YPTS_0834 940314 - 939277 - | inner-membrane translocator YPTS_0835 941316 - 940327 - | inner-membrane translocator YPTS_0836 942823 - 941309 - | ABC transporter related TERM 978 942426 - 942405 - G 72 -5.8 -4.3586 | GGATCGAGACTAAAA GCCAGTTC ATGCAA GATCTGGC AGGCTTTTTGTTTGA YPTS_0837 943979 - 942972 - | carbohydrate ABC transporter periplasmic-binding protein YPTS_0838 944946 - 944137 - | DeoR family transcriptional regulator TERM 979 944786 - 944808 + g 100 -4.9 -5.75342 | AGTGCGACAGCGCCG CCAAAACTG CGGAT CAGTTTTTG TTTTTTTTGCAACAC TERM 980 945596 - 945618 + H 100 -8.5 -4.93365 | opp_overlap 945596 CGATTAGTTAAATAA CGTCATTCG AATAC CGAATGATG TTTTTCATTATCGCC YPTS_0839 945667 - 946362 + | L-ribulose-5-phosphate 4-epimerase YPTS_0840 946812 - 949262 + | anaerobic dimethyl sulfoxide reductase subunit A YPTS_0841 949274 - 949891 + | dimethylsulfoxide reductase, chain B YPTS_0842 949893 - 950753 + | DMSO reductase anchor subunit (DmsC) TERM 981 950778 - 950804 + F 100 -15.3 -3.85092 | GGCGACGACACTTTG GCTATTCTGGG GAGCG CCCAGAATAGC TTTGCTCTGCCTCAT TERM 982 950992 - 951004 + G 85 -2.6 -5.55769 | GGACTAACGGGGCGA GTGC TAGGT GCGC TTTTTTATTGTGAGC YPTS_0843 950899 - 951609 + | cytoplasmic chaperone TorD family protein TERM 983 951833 - 951814 - T 85 -9.2 -4.09685 | TTGCATTCTTTAAAA TGTCCCGC AAAC GCGGGGCA AAGAGAAACGGAACA YPTS_0844 952397 - 951867 - | cytochrome B561 YPTS_0845 952928 - 952545 - | cytochrome b562 TERM 984 952961 - 953007 + r 82 -6.9 -4.77122 | gap 2, opp_overlap 952969 952973, overlap 952964 952965 952969 952973 TTATGATTTTCTTCT CTTA-TAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTAGTTAG TTATTTTTTATATCA TERM 985 952964 - 953003 + r 78 -8.8 -3.81144 | gap 1, opp_overlap 952969 952973, overlap 952961 952965 952969 952973 TGATTTTCTTCTCTT ATAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTAG TTAGTTATTTTTTAT TERM 986 952965 - 953002 + r 89 -12.3 -2.86246 | gap 1, opp_overlap 952969 952973, overlap 952964 952961 952969 952973 GATTTTCTTCTCTTA TAAATAGAGGGG-GGA AGATAAA TCCTCCCCTCTATTTA GTTAGTTATTTTTTA TERM 987 952998 - 952969 - R 78 -8.7 -3.85698 | gap 1, opp_overlap 952965 952964 952961 952969 952973, overlap 952973 TTCTTCTCTTATAAA TAGAGGGG-GGA AGATAAA TCCTCCCCTCTA TTTAGTTAGTTATTT TERM 988 952969 - 952998 + r 80 -8.7 -4.05045 | gap 1, opp_overlap 952969 952973, overlap 952965 952964 952961 952973 TTCTTCTCTTATAAA TAGAGGGG-GGA AGATAAA TCCTCCCCTCTA TTTAGTTAGTTATTT TERM 989 952996 - 952973 - R 71 -8.8 -3.3353 | opp_overlap 952969 952965 952964 952961 952973, overlap 952969 TCTCTTATAAATAGA GGGGGGAAGA TAAA TCCTCCCCTC TATTTAGTTAGTTAT TERM 990 952973 - 952996 + r 75 -8.8 -3.59634 | opp_overlap 952973 952969, overlap 952969 952965 952964 952961 TCTCTTATAAATAGA GGGGGGAAGA TAAA TCCTCCCCTC TATTTAGTTAGTTAT YPTS_0846 955217 - 953004 - | catalase/peroxidase HPI TERM 991 953715 - 953726 + g 74 -4.4 -4.91109 | CTCTGCGGGATCGTT GACT GGCC AGTC TTTTTGTGGTGCCAG TERM 992 956451 - 956440 - g 73 -7.2 -4.2679 | GAAGCCGCATTAAAA GCGG CGGG CCGC AATGATGTGGTGGTG TERM 993 956609 - 956597 - g 80 -9.1 -4.15833 | ATCAGTATCTGAAAA CCGGT AAA ACCGG TCTGGAAGAGAAACA YPTS_0847 955753 - 956694 + | periplasmic binding protein/LacI transcriptional regulator TERM 994 956751 - 956772 + F 89 -11.5 -3.53761 | opp_overlap 956754, overlap 956752 956754 956766 956767 CCGCTTTAGCCGTAA TGAGGGGCG ACAT CGCCCCTCC TTTCAGGAGGCATTA TERM 995 956752 - 956771 + F 100 -15 -2.72043 | opp_overlap 956754, overlap 956751 956754 956766 956767 CGCTTTAGCCGTAAT GAGGGGCG ACAT CGCCCCTC CTTTCAGGAGGCATT TERM 996 956769 - 956754 - f 83 -11.8 -2.72344 | opp_overlap 956752 956751 956754 956766 956767 CTTTAGCCGTAATGA GGGGCG ACAT CGCCCC TCCTTTCAGGAGGCA TERM 997 956754 - 956769 + F 86 -11.8 -2.90496 | opp_overlap 956754, overlap 956752 956751 956766 956767 CTTTAGCCGTAATGA GGGGCG ACAT CGCCCC TCCTTTCAGGAGGCA YPTS_0848 956787 - 957404 + | putative lipoprotein TERM 998 958467 - 958451 - g 90 -7.9 -5.09173 | opp_overlap 958451 GAAGATCGTAAAAAA GCCGGGA TTT TCCCTGC TTCATCGGTCGCCTG YPTS_0849 957404 - 958927 + | ABC transporter related YPTS_0850 958924 - 960051 + | inner-membrane translocator TERM 999 960638 - 960612 - g 73 -3.7 -4.89567 | gap 1, opp_overlap 960633, overlap 960607 960613 960614 CTGTAAAACACAAAA CGCCAGGCATTG AACT CAATACCGGG-G CTTTAGGGCACGGTT TERM 1000 960836 - 960824 - g 77 -4.8 -5.00267 | AACGACAAAAATAAA CTGC AACTG GCAG GGACCACTAAATCAA YPTS_0851 960275 - 961105 + | transketolase domain-containing protein YPTS_0852 961098 - 962042 + | transketolase domain-containing protein TERM 1001 962356 - 962316 - g 79 -10.5 -3.66178 | gap 2, opp_overlap 962317, overlap 962317 TTTGGGAACGGGAAA CCGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCGT CGTTCAGAGGCTTTC TERM 1002 962355 - 962317 - g 88 -14 -2.79492 | gap 2, opp_overlap 962317, overlap 962316 TTGGGAACGGGAAAC CGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCG TCGTTCAGAGGCTTT TERM 1003 962317 - 962355 + G 75 -11.8 -2.7186 | gap 2, opp_overlap 962317 962316 TTGGGAACGGGAAAC CGGCAC-GCC-GCTCACG CCAGT CGTAAGCTGGCAGTGCCG TCGTTCAGAGGCTTT TERM 1004 963505 - 963516 + G 71 -7.2 -4.07885 | CTGGCAAACGGCCAT CGCG CGTG CGCG TTTTCAGCCGAAATA YPTS_0853 962045 - 963532 + | carbohydrate kinase FGGY YPTS_0854 963553 - 964977 + | L-fucose isomerase-like protein TERM 1005 965157 - 965172 + G 72 -10.4 -3.0395 | opp_overlap 965152 AAGAGTAAAGTGTCC GCCCCA TGGC TGGGGC TGTTAACCAATATGT YPTS_0855 965064 - 965207 + | hypothetical protein YPTS_0856 966143 - 965199 - | DeoR family transcriptional regulator YPTS_0857 967731 - 966391 - | major facilitator transporter TERM 1006 967276 - 967257 - G 71 -9.3 -3.59233 | overlap 967253 TAACCATTAAAGTAA TCAGCCC CAGCGC GGGCTGA AACATAAGCACCACC TERM 1007 967833 - 967849 + H 100 -10.9 -4.41548 | opp_overlap 967846 ATCATGATTTTTTAT CCCCTTT TAA AAAGGGG TTTTCTCCCCTCTCA TERM 1008 967859 - 967846 - H 70 -5.2 -4.56775 | opp_overlap 967833 ATCCCCTTTTAAAAA GGGG TTTTCT CCCC TCTCACCGCTATTCG TERM 1009 968115 - 968105 - g 71 -6.8 -4.27465 | CATAAGTTAAAAGAA CACG GTG CGTG GGTGACCTGTGCAGA YPTS_0858 968048 - 968536 + | CinA domain-containing protein TERM 1010 969607 - 969589 - g 77 -3.8 -5.10933 | opp_overlap 969590, overlap 969591 CTATTTAAAAGAAAA CCCAGC CATTGCT GCTGAG TTAGATAAAAAACTG YPTS_0859 968651 - 969721 + | recA protein TERM 1011 969749 - 969780 + F 100 -18.2 -3.6682 | opp_overlap 969749 969753, overlap 969753 ACCAGTTGGAGTAAA CAAACAGACCGTCA CTTG TGGCGGTCTGTTTG TTTGAGTAAATAACA TERM 1012 969780 - 969749 - f 100 -16 -3.73953 | opp_overlap 969749 969753, overlap 969753 ACCAGTTGGAGTAAA CAAACAGACCGTCA CTTG TGGCGGTCTGTTTG TTTGAGTAAATAACA TERM 1013 969776 - 969753 - f 100 -11 -4.49556 | opp_overlap 969749 969753, overlap 969749 GTTGGAGTAAACAAA CAGACCGTCA CTTG TGGCGGTCTG TTTGTTTGAGTAAAT TERM 1014 969753 - 969776 + F 100 -13.2 -4.46514 | opp_overlap 969753 969749, overlap 969749 GTTGGAGTAAACAAA CAGACCGTCA CTTG TGGCGGTCTG TTTGTTTGAGTAAAT TERM 1015 969863 - 969853 - f 76 -6.8 -4.41494 | opp_overlap 969862 TAGCGGTAAGTAAAA GGGT GTT ACCC AAAGTAATTGGTGTT TERM 1016 969987 - 969977 - f 86 -6.8 -4.93968 | opp_overlap 969986 AGCGACAAGTAAAAA GGGT GTT ACCC AAAGTAATTGGTGTT TERM 1017 970110 - 970100 - f 76 -6.8 -4.41494 | opp_overlap 970109 TAGCGGTAAGTAAAA GGGT GTT ACCC AAAGTAATTGGTGTT TERM 1018 970233 - 970223 - f 76 -6.8 -4.41494 | opp_overlap 970232 TAGCGGTAAGTAAAA GGGT GTT ACCC AAAGTAATTGGTGTT TERM 1019 970356 - 970346 - f 76 -6.8 -4.41494 | opp_overlap 970355 TAGCGGTAAGTAAAA GGGT GTT ACCC AAAGTAATTGGTGTT TERM 1020 970480 - 970470 - f 86 -6.8 -4.93968 | opp_overlap 970479 AGCGACAAGTAAAAA GGGT GTT ACCC AAAGTAATTGGTGTT YPTS_0860 970600 - 971148 + | regulatory protein RecX TERM 1021 973218 - 973205 - g 76 -2.3 -5.27335 | opp_overlap 973206, overlap 973206 GCGGCGAAAGAAAAA GGTGC AATG GCACT GTTCGGCGAGAAGTA YPTS_0861 971288 - 973915 + | alanyl-tRNA synthetase TERM 1022 973964 - 973938 - f 74 -9.4 -3.35849 | opp_overlap 973938, overlap 973936 TCTATTAAATCAACA CGCCATATCTCG GTA CTAGGTATGGCG TTTTTTAATTTTCCT TERM 1023 973938 - 973964 + F 100 -11.6 -5.48054 | opp_overlap 973936 973938 TCTATTAAATCAACA CGCCATATCTCG GTA CTAGGTATGGCG TTTTTTAATTTTCCT YPTS_0862 974165 - 974350 + | carbon storage regulator, CsrA TERM 1024 974355 - 974389 + F 100 -15 -5.27206 | opp_overlap 974361, overlap 974358 CGACTTACTGATTTT GAAGCAGCGTCTCGTG TAA CACGAGGCGCTACTGC TTTTTATTGTCTCTA TERM 1025 974358 - 974386 + F 100 -15.3 -3.43245 | opp_overlap 974361, overlap 974355 CTTACTGATTTTGAA GCAGCGTCTCGTG TAA CACGAGGCGCTAC TGCTTTTTATTGTCT TERM 1026 974383 - 974361 - f 93 -13.4 -2.72463 | opp_overlap 974358 974355 ACTGATTTTGAAGCA GCGTCTCGTG TAA CACGAGGCGC TACTGCTTTTTATTG TERM 1027 975303 - 975287 - f 76 -10.9 -2.69468 | overlap 975284 975299 CAGCTGGATAGAGTA CTCGGTT ACG AACCGAG TGGTCGGAAGTTCGA TERM 1028 975353 - 975338 - f 73 -9 -3.52102 | overlap 975352 AGCGTAGCGAGACAA CGTTGC TTTA GCAACG GCCCGTAGGGCGAGG TERM 1029 975410 - 975425 + F 91 -8.2 -4.67635 | opp_overlap 975410, overlap 975420 CACCATATTAAGGAA CCTCGC TATA GCGGGG TTTTCTGCTTTTGGC YPTS_0863 975650 - 976216 + | beta-phosphoglucomutase family hydrolase TERM 1030 976333 - 976313 - g 70 -9.7 -3.16564 | opp_overlap 976310 976307 TGGTCACCCTATTAA CTGCGGG TAGTGCG CCCGCAG CGATATTGGTGTTAT YPTS_0864 976213 - 976641 + | hypothetical protein YPTS_0865 976685 - 978283 + | glutamate--cysteine ligase TERM 1031 978310 - 978293 - f 100 -11.3 -5.55001 | CAATAAAAAAGAAAA GGCCACA TCAC TGTGGCC AAATTAACATCTCTA TERM 1032 978377 - 978349 - f 100 -10.4 -4.36554 | GATGATGATAACAAA TGCGCGTCTT TCACATATT AAGACGCGCA GGATGAGTAAAAGTT YPTS_0866 978451 - 978966 + | quorum-sensing autoinducer 2 (AI-2), LuxS TERM 1033 979000 - 979017 + T 87 -4.8 -5.46657 | opp_overlap 978995 979000 979002 AGGAGAATGATAAAA GGCGCT GATTAA AGCGTC TTTTTTATTAAACTG YPTS_0867 980338 - 979055 - | hypothetical protein YPTS_0868 981198 - 980407 - | cytochrome c assembly protein TERM 1034 981824 - 981812 - g 74 -9.1 -3.62518 | opp_overlap 981812 TCAAACAGTTGGAAA CCCTG GCT CAGGG TGTTGGCATTGATTT TERM 1035 982434 - 982424 - g 71 -6.8 -4.26076 | opp_overlap 982426 GTATGTTGAGTAAAA TGCC AGG GGCA GGTCAGTTGCCAGAA YPTS_0869 981364 - 982725 + | signal recognition particle protein TERM 1036 982832 - 982852 + F 70 -2.6 -5.00884 | opp_overlap 982832 CAAAATGTGCGAACA GGAATCTA CGCTT TAGATTGC TTTTTTCGCCAAAAT TERM 1037 982896 - 982929 + F 100 -18.3 -4.67982 | GGGCTTTTTATATTG CAACTGGACCCCGTT CCCC GATGGGGTCCAGTTG TTTTATTAACTAAAG YPTS_0870 982953 - 983201 + | ribosomal protein S16 YPTS_0871 983223 - 983771 + | 16S rRNA processing protein RimM YPTS_0872 983810 - 984550 + | tRNA (guanine-N1)-methyltransferase YPTS_0873 984631 - 984978 + | ribosomal protein L19 TERM 1038 985020 - 985040 + T 100 -12.6 -5.69473 | opp_overlap 985019 985020 TTAATACTTATGAAG GGGCTAGC CATGT GCTAGCCC TTTTTTTATGCTCTA TERM 1039 985040 - 985020 - T 86 -12.6 -2.52987 | opp_overlap 985020, overlap 985019 TTAATACTTATGAAG GGGCTAGC CATGT GCTAGCCC TTTTTTTATGCTCTA TERM 1040 985223 - 985201 - T 74 -10.6 -2.69545 | opp_overlap 985203, overlap 985200 985203 GGCAGAGAGGAGAAT TAGCGCGGTA TCA CACCACGCTA TATAGACGAATGGTG YPTS_0874 986008 - 985241 - | hypothetical protein YPTS_0875 987674 - 986331 - | anaerobic c4-dicarboxylate antiporter YPTS_0876 988823 - 988107 - | LytTR family two component transcriptional regulator TERM 1041 989142 - 989129 - g 75 -5.3 -4.8143 | opp_overlap 989121, overlap 989121 989133 GGAAGAACTGAAAAA TCAGT TTCC ACTGA GCGAAAATGATCAGT YPTS_0877 989049 - 990125 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1042 991110 - 991124 + G 74 -10 -3.61517 | TACTACAAACGCTTT GGTGAG GCG CTCACC TTGTTAGAGCACCAT YPTS_0878 990138 - 991259 + | chorismate mutase TERM 1043 991290 - 991318 + T 100 -13.2 -5.69473 | GATAGATTTTTATAG GTCATCCCAGCA CAGCC TGCCGGGATGAC TTTTTTTATGGTGTG YPTS_0879 992201 - 991422 - | IstB ATP binding domain-containing protein TERM 1044 992120 - 992134 + g 82 -11.4 -3.3506 | overlap 992133 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPTS_0880 993223 - 992201 - | integrase catalytic region TERM 1045 993174 - 993189 + g 71 -4.6 -4.56914 | overlap 993175 GCCCGGCTACTCATT CCCTGC TTGT GCAGGA TTTTAATTTCCATAA TERM 1046 993245 - 993227 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPTS_0881 994480 - 993323 - | chorismate mutase TERM 1047 994610 - 994593 - H 100 -12.7 -5.77988 | opp_overlap 994593 ATATACATAAAAAAA GCCTCCC GCTT GGGAGGC TTTCTTGTTCGTCTT TERM 1048 994593 - 994610 + H 100 -12.7 -4.51224 | opp_overlap 994593 ATATACATAAAAAAA GCCTCCC GCTT GGGAGGC TTTCTTGTTCGTCTT YPTS_0882 994615 - 994752 + | hypothetical protein TERM 1049 994813 - 994798 - T 100 -11.8 -4.87291 | GATGTCAATTAAAAA CGCGCC CGAA GGCGCG TTACACCGAAATTAG YPTS_0883 995204 - 994842 - | sigma 54 modulation protein/ribosomal protein S30EA TERM 1050 995508 - 995537 + r 74 -4.9 -4.77757 | opp_overlap 995514, overlap 995510 995514 GTTGAAAACCTAAAT TGAAAACGGCAGC CTGA GCTGCCGTTGGTG TTTTCATTTTTCGGG TERM 1051 995510 - 995535 + r 72 -7.5 -3.99386 | opp_overlap 995514, overlap 995508 995514 TGAAAACCTAAATTG AAAACGGCAGC CTGA GCTGCCGTTGG TGTTTTCATTTTTCG TERM 1052 995514 - 995531 + r 100 -12.7 -3.58476 | opp_overlap 995514, overlap 995510 995508 AACCTAAATTGAAAA CGGCAGC CTGA GCTGCCG TTGGTGTTTTCATTT TERM 1053 995531 - 995514 - R 100 -12.7 -4.37198 | opp_overlap 995514 995510 995508 AACCTAAATTGAAAA CGGCAGC CTGA GCTGCCG TTGGTGTTTTCATTT YPTS_0884 996290 - 995559 - | putative lipoprotein TERM 1054 996391 - 996381 - H 75 -8.2 -3.8766 | GCACATTATATTAAA CGGC ATC GCCG TCAAAACCCAACGTT YPTS_0885 996426 - 997403 + | RluA family pseudouridine synthase TERM 1055 997441 - 997454 + G 73 -9.5 -3.29144 | GATTGGCCGATGCCT GCCCG CGTC CGGGC TTGTAGCACCACTCG TERM 1056 997817 - 997842 + G 71 -10.4 -2.78793 | opp_overlap 997817, overlap 997814 GTGTTCTGGAACACA CGGTGGCGCA ATTCAA TGCGGCACCG TCCTCTCTTATGGCT TERM 1057 997842 - 997817 - g 72 -10.4 -3.06696 | opp_overlap 997817 997814 GTGTTCTGGAACACA CGGTGGCGCA ATTCAA TGCGGCACCG TCCTCTCTTATGGCT YPTS_0886 997405 - 998136 + | hypothetical protein TERM 1058 998892 - 998868 - g 71 -5 -4.53777 | gap 1 TCGAACCAAAAATAA CCCAGTGCTGA TTGG TGAGC-CTGGG GTGGGTAAAACCGCT TERM 1059 999572 - 999559 - g 79 -2.3 -5.41143 | CAGGCCCTAAAAAAA GAGTC AGAT GACGC CAGTAAAAAACGGTT YPTS_0887 998266 - 1000839 + | ATP-dependent chaperone ClpB TERM 1060 1000855 - 1000872 + T 100 -12.7 -5.80727 | TAGCTGATCCTCTAA GGGGCGA GAAA TCGCCCC TTTTTTGTTGTTTTT TERM 1061 1004715 - 1004697 - T 82 -10.3 -3.57798 | overlap 1004710 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 1062 1005175 - 1005149 - T 70 -9.4 -2.75844 | opp_overlap 1005163 1005171, overlap 1005148 1005151 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 1063 1005222 - 1005211 - T 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 1064 1006334 - 1006344 + T 74 -6.8 -4.27316 | opp_overlap 1006334 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 1065 1006600 - 1006566 - T 95 -9.2 -4.50627 | opp_overlap 1006573 CAGGCATCAAATAAA GCCAAGACCCCATGCC CAA AGCGTGGGGTTTTTGC TGTGCGCGAAACACA TERM 1066 1006573 - 1006593 + T 100 -10.4 -4.8048 | opp_overlap 1006566 CAAATAAAGCCAAGA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 1067 1006639 - 1006659 + T 100 -10.4 -4.8048 | opp_overlap 1006636 GCGTTGTAATGATGA CCCCATGC CAAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 1068 1006706 - 1006724 + T 95 -8.1 -5.21709 | opp_overlap 1006706 1006705 CGTTGTATTGATAAC CCCATGC CCAAA GCGTGGG TTTTTTGCTGTGCGC TERM 1069 1006771 - 1006791 + T 100 -10.4 -4.8048 | opp_overlap 1006771 ACGTTGTATTGATAA CCCCATGC CCAAA GCGTGGGG TTTTTGCTGTGCGCG TERM 1070 1006791 - 1006771 - T 71 -8.9 -3.35798 | opp_overlap 1006771 ACGTTGTATTGATAA CCCCATGCC CAA AGCGTGGGG TTTTTGCTGTGCGCG TERM 1071 1006837 - 1006857 + T 72 -6.1 -4.34402 | GCGTTGTAATGATGA CCCCATG CCAAAAA CGTGGGG TTTTGCTGTGCGCGA YPTS_0891 1007350 - 1007009 - | putative lipoprotein TERM 1072 1007380 - 1007396 + r 70 -3.6 -4.78848 | opp_overlap 1007380, overlap 1007372 AGTGGGAGATGAAAA CCCGCT AATTC ACCGGG TTTTATCTTTAAGAC YPTS_0892 1008767 - 1007412 - | phospholipase D/transphosphatidylase YPTS_0893 1011585 - 1008943 - | GCN5-related N-acetyltransferase YPTS_0894 1012377 - 1011628 - | DTW domain-containing protein TERM 1073 1012422 - 1012395 - R 75 -8.6 -3.86897 | gap 1, opp_overlap 1012419 1012420, overlap 1012397 1012417 CGGACTCCTGAGAAA TAGCGCCATTCTA ATA TAGAATGGC-CCA CGCCCCGACAGAAAA TERM 1074 1012421 - 1012397 - R 89 -11.5 -3.5241 | opp_overlap 1012419 1012420, overlap 1012395 1012417 GACTCCTGAGAAATA GCGCCATTCTA ATA TAGAATGGCCC ACGCCCCGACAGAAA YPTS_0895 1012984 - 1012547 - | thioredoxin TERM 1075 1013208 - 1013220 + H 77 -10.5 -3.14132 | opp_overlap 1013204 ACATCAGGTAATCTT CGCGC CCT GCGCG TTGGTGGAGAAGACA YPTS_0896 1013236 - 1014402 + | tRNA/rRNA methyltransferase (SpoU) TERM 1076 1014437 - 1014493 + T 100 -13.8 -3.40775 | opp_overlap 1014438 1014447 1014452, overlap 1014438 1014452 GAGCGACGTTTTAGA ACGGTAAAAATAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTTTGTTGACCGC TATTTGGCTAAAAAT TERM 1077 1014438 - 1014492 + T 100 -17.3 -2.64144 | opp_overlap 1014438 1014447 1014452, overlap 1014437 1014452 AGCGACGTTTTAGAA CGGTAAAAATAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTTTGTTGACCG CTATTTGGCTAAAAA TERM 1078 1014492 - 1014438 - T 100 -17.3 -3.30243 | opp_overlap 1014437 1014438 1014452, overlap 1014447 1014452 AGCGACGTTTTAGAA CGGTAAAAATAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTTTGTTGACCG CTATTTGGCTAAAAA TERM 1079 1014483 - 1014447 - T 100 -13.8 -4.6902 | opp_overlap 1014438 1014437 1014452, overlap 1014438 1014452 TTAGAACGGTAAAAA TAAAAGGGGGCGCTGA TGAGT TCAGGGCCCCCTTTTT TGTTGACCGCTATTT TERM 1080 1014452 - 1014478 + T 100 -13.7 -5.4505 | opp_overlap 1014452 1014447 1014438, overlap 1014438 1014437 ACGGTAAAAATAAAA GGGGGCGCTGA TGAGT TCAGGGCCCCC TTTTTTGTTGACCGC TERM 1081 1014478 - 1014452 - T 100 -13.7 -5.27023 | opp_overlap 1014438 1014437 1014452, overlap 1014447 1014438 ACGGTAAAAATAAAA GGGGGCGCTGA TGAGT TCAGGGCCCCC TTTTTTGTTGACCGC YPTS_0897 1016070 - 1014535 - | EmrB/QacA family drug resistance transporter YPTS_0898 1017281 - 1016109 - | efflux pump membrane protein TERM 1082 1017210 - 1017230 + g 85 -2.6 -5.55769 | gap 1 GGCCGTCAGCAACAG CAGTACACG TTTA CGT-TGCTG TTTTTTATTCTGCGG YPTS_0899 1018177 - 1017665 - | MarR family transcriptional regulator YPTS_0900 1018690 - 1018349 - | hypothetical protein YPTS_0901 1019460 - 1018687 - | AzlC family protein TERM 1083 1019121 - 1019111 - G 71 -4.6 -4.54727 | TCGGTTAAACCAAAA GCCC ATA AGGC CGTTTTTTTACCTGA YPTS_0902 1020819 - 1019620 - | major facilitator transporter TERM 1084 1020308 - 1020279 - G 95 -15.1 -2.91695 | overlap 1020276 1020301 1020302 GGCAGCGCCAAAGGA CCAGTGCCATGAT AAAC ATCAAGGCACTGG CAACCCAATAAATGG TERM 1085 1020912 - 1020928 + r 78 -9.3 -3.59979 | GAGGCATTTTCGAGC GAGGGCC AAA GGCCCCC TTTGGAATGACAACC YPTS_0903 1021495 - 1021028 - | hypothetical protein YPTS_0904 1022921 - 1021524 - | amidohydrolase YPTS_0905 1023121 - 1022918 - | hypothetical protein TERM 1086 1024213 - 1024196 - g 76 -9.1 -3.80877 | overlap 1024194 TTACTGCATAAAATA CTGGCAG AAGG CCGCCAG CGGATACATCAAATT YPTS_0906 1023431 - 1024264 + | RpiR family transcriptional regulator YPTS_0907 1024592 - 1025380 + | extracellular solute-binding protein YPTS_0908 1025393 - 1026061 + | polar amino acid ABC transporter, inner membrane subunit YPTS_0909 1026058 - 1026711 + | polar amino acid ABC transporter, inner membrane subunit YPTS_0910 1026692 - 1027438 + | ABC transporter related YPTS_0911 1027470 - 1028795 + | aminotransferase class V TERM 1087 1029291 - 1029273 - g 74 -11 -2.84504 | overlap 1029270 1029268 AGTGGTTAAATACGA CCGATGCC GAT GGCATCAG TGTCGCGCAAGCGAT YPTS_0912 1028795 - 1030078 + | amidase TERM 1088 1030149 - 1030130 - T 81 -12.2 -2.53715 | overlap 1030129 1030132 CTCATCAGGACTAAT GAGCCTCA TCCC TGAGGCTC CCCCCAAAGGTACCG YPTS_0913 1030949 - 1030179 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YPTS_0914 1032097 - 1030937 - | aminotransferase class I and II TERM 1089 1031049 - 1031036 - G 74 -6.7 -4.38712 | overlap 1031046 CGGAGCTTCACAAAA TACCG ATAA CGGTA TTGCAGCAACGCCCA TERM 1090 1032307 - 1032296 - g 71 -7.2 -4.09685 | opp_overlap 1032306 CTGGATCGGCGAAAA GGGC TGGT GCCC GGCGACTGGCGGTAA YPTS_0915 1032237 - 1032905 + | methylthioribulose-1-phosphate dehydratase YPTS_0916 1032902 - 1033591 + | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YPTS_0917 1033690 - 1034232 + | acireductone dioxygenase ARD YPTS_0918 1035305 - 1034265 - | aIF-2BI family translation initiation factor TERM 1091 1035989 - 1035975 - g 74 -2.7 -5.15969 | opp_overlap 1035976, overlap 1035976 GCGCAAGCGAAAAAA GCGGC GGTGA GCCGT TATACCAACCCGGAA TERM 1092 1036448 - 1036435 - g 76 -2.3 -5.18357 | overlap 1036442 TAAGTCAGGAAAAAA CACAG GATC CCGCG TTGGCGACGGAAGGT YPTS_0919 1035501 - 1036724 + | 5-methylthioribose kinase TERM 1093 1036798 - 1036808 + F 75 -2.4 -5.30155 | CAACGCCAATGACGT TGGG GAT CCCC TTTTTTACTTGATGC TERM 1094 1036922 - 1036932 + F 75 -2.4 -5.30155 | CAACGCCAATGACGT TGGG GAT CCCC TTTTTTACTTGATGG TERM 1095 1037025 - 1037010 - f 73 -9 -3.41359 | overlap 1037008 GCCTCAAAATTAATA GCCTCA TCCC TGAGGC TCAGACTGCTGACAA TERM 1096 1037114 - 1037088 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 1037106, overlap 1037089 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCTTACATGGATG TERM 1097 1037115 - 1037089 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 1037106, overlap 1037088 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCTTACATGGATGT TERM 1098 1037213 - 1037188 - f 93 -11.9 -3.62046 | overlap 1037189 GCACTTTGTCAATAA CCTGAGCCTCA TCCC TGAGGCTCAGC CTACGAGCTAGCATA TERM 1099 1037212 - 1037189 - f 100 -15.4 -2.77013 | overlap 1037188 CACTTTGTCAATAAC CTGAGCCTCA TCCC TGAGGCTCAG CCTACGAGCTAGCAT YPTS_0920 1037230 - 1037322 + | hypothetical protein TERM 1100 1037706 - 1037742 + F 82 -2.4 -5.66989 | gap 1, overlap 1037703 TCAAATTGCTGTTTG CCGTAAACCTGTGAC GGCAATTA GTC-TAAGTTTACGG TTTTTTTAGTGTTTA YPTS_0921 1037927 - 1039717 + | polypeptide-transport-associated domain-containing protein TERM 1101 1040475 - 1040489 + G 70 -10 -3.1247 | ACTGTGCTGGCAGTC GGTCAC AGC GTGACC TTGAATCTGGACCAT TERM 1102 1041405 - 1041394 - g 76 -7.2 -4.33274 | overlap 1041378 1041396 CCGATATCACTAAAA CGGC GGGA GCCG ATGCGACGCTGACAT YPTS_0922 1039758 - 1045490 + | filamentous haemagglutinin outer membrane protein YPTS_0923 1045645 - 1047498 + | putative accessory processing protein TERM 1103 1047568 - 1047587 + G 73 -7.9 -4.08216 | ACTTCATCGCTTGGT TGCCGAT ATCCCG ATCGGCA TTTTACAGCACATCA TERM 1104 1047748 - 1047764 + G 75 -10.1 -3.44284 | overlap 1047746 ACAGCGATTACTCGG GGCGCAG GGT TTGCGCC TATTGTTGATGGGGC YPTS_0924 1047500 - 1048246 + | hypothetical protein TERM 1105 1048378 - 1048353 - T 100 -9 -4.82128 | opp_overlap 1048349 1048353 TTATTAAACATAAAA CTAAGCCTCC TTAATG GGAGGCTTGG TTGATTATTTCGATA TERM 1106 1048353 - 1048378 + T 93 -11.9 -3.62723 | opp_overlap 1048353, overlap 1048349 TTATTAAACATAAAA CTAAGCCTCCT TAAT GGGAGGCTTGG TTGATTATTTCGATA YPTS_0925 1050865 - 1048418 - | hypothetical protein YPTS_0926 1051105 - 1051686 + | phosphoheptose isomerase TERM 1107 1052616 - 1052595 - g 73 -8.7 -3.91084 | opp_overlap 1052595 TGACCGGTAATGAAA CCTGGCACA AAAT TGCACCAGG TGAATTTGCTTTATT YPTS_0927 1051889 - 1052662 + | glutamine amidotransferase class-II YPTS_0928 1053367 - 1052627 - | hypothetical protein TERM 1108 1053639 - 1053623 - H 72 -6.5 -4.28049 | opp_overlap 1053632 CGGAAAATGCTAAAA TCACCCG CAG CTGGTGA CCTGCTTGTGTAATG YPTS_0929 1053845 - 1055206 + | NADH:ubiquinone oxidoreductase, subunit A YPTS_0930 1055210 - 1056451 + | NADH:ubiquinone oxidoreductase, subunit B YPTS_0931 1056441 - 1057241 + | NADH:ubiquinone oxidoreductase, subunit C TERM 1109 1057371 - 1057392 + G 77 -8.7 -4.27796 | overlap 1057372 ATTAGTGATGACTCT GGCAGTCAC GCTG GTGACTGCG TTTTCGAGTTTCTTC TERM 1110 1057372 - 1057391 + G 82 -12.2 -3.15593 | overlap 1057371 TTAGTGATGACTCTG GCAGTCAC GCTG GTGACTGC GTTTTCGAGTTTCTT YPTS_0932 1057234 - 1057863 + | NADH:ubiquinone oxidoreductase, subunit D TERM 1111 1058229 - 1058245 + G 72 -10.1 -3.05997 | AATCACCGTGAACTG CGCCATC TTT GGTGGCG TGTCGTTTATGGCAC YPTS_0933 1057870 - 1058466 + | NADH:ubiquinone oxidoreductase, subunit E YPTS_0934 1058482 - 1059705 + | NADH:ubiquinone oxidoreductase, subunit F TERM 1112 1060406 - 1060388 - g 71 -4.4 -4.66535 | overlap 1060390 AATGGGGAAAATAAA CCTTGGCG TAT CGCCATTG AAAAGCCAGTCGCGG YPTS_0935 1059689 - 1060768 + | ApbE family lipoprotein YPTS_0936 1060781 - 1061008 + | hypothetical protein TERM 1113 1061177 - 1061137 - T 100 -19.1 -3.32844 | opp_overlap 1061138 1061142, overlap 1061138 1061142 TTTTTTATCTGACAA GCAAAGCCCCCGAACGACG CAT CATTGTTCGGGGGCTTTGT TGTTTAATTATTGTC TERM 1114 1061176 - 1061138 - T 100 -22.6 -2.59564 | opp_overlap 1061138 1061142, overlap 1061137 1061142 TTTTTATCTGACAAG CAAAGCCCCCGAACGACG CAT CATTGTTCGGGGGCTTTG TTGTTTAATTATTGT TERM 1115 1061138 - 1061176 + T 100 -22.6 -4.1648 | opp_overlap 1061138 1061137 1061142, overlap 1061142 TTTTTATCTGACAAG CAAAGCCCCCGAACGACG CAT CATTGTTCGGGGGCTTTG TTGTTTAATTATTGT TERM 1116 1061172 - 1061142 - T 100 -17.6 -4.00124 | opp_overlap 1061138 1061142, overlap 1061138 1061137 TATCTGACAAGCAAA GCCCCCGAACGACG CAT CATTGTTCGGGGGC TTTGTTGTTTAATTA TERM 1117 1061142 - 1061172 + T 100 -17.6 -4.62669 | opp_overlap 1061142 1061138 1061137, overlap 1061138 TATCTGACAAGCAAA GCCCCCGAACGACG CAT CATTGTTCGGGGGC TTTGTTGTTTAATTA YPTS_0937 1062200 - 1061253 - | glycerophosphoryl diester phosphodiesterase TERM 1118 1061454 - 1061468 + g 74 -4.2 -4.8543 | overlap 1061452 1061456 TGCGCTAGAACGCCC TTCACC CAA GGTGTA TTTTTCTACAACTTC TERM 1119 1062514 - 1062535 + H 71 -6.7 -4.15044 | overlap 1062517 TGAATCCTTTTACTT TAACTGTAT ACTT ATACAGTTG TTTGTTGGGCGGGGG YPTS_0938 1062556 - 1063614 + | DNA-repair protein YPTS_0939 1065188 - 1063728 - | aminoacyl-histidine dipeptidase TERM 1120 1063850 - 1063871 + g 70 -2.2 -5.00616 | overlap 1063844 TTGGCCCAATCGACA CCATGTCC ATGTTA GGATAGGG TTTTTTGAACAAACC TERM 1121 1065871 - 1065885 + H 82 -2.1 -5.65927 | gap 1 AATGAGGTTTTTACT TGAGGC TGTA GCC-CA TTTTTTATTTAAATC TERM 1122 1066338 - 1066352 + H 76 -2.8 -5.26875 | opp_overlap 1066325, overlap 1066325 1066324 1066350 TACCTATTGCTATCT TTAGCT ATA GGCTGA TTTTTTGATTGAAAA TERM 1123 1066752 - 1066762 + H 70 -2.6 -4.9725 | opp_overlap 1066752 CGGAAAAATAAGAAT TAAA TCC TTTA TTTTTGTGTCGGCAT TERM 1124 1067905 - 1067895 - g 77 -4 -5.13016 | opp_overlap 1067895 1067889, overlap 1067889 AATTAAAAGTAAAAA GTAA CGC TTAC TATTTATGTGATAAT YPTS_0940 1067189 - 1067974 + | LysR family transcriptional regulator TERM 1125 1068420 - 1068398 - T 100 -13.6 -5.26875 | opp_overlap 1068419 TTCTGAATTAAAAAA CGGGTATTAT AGA ATAATACCCG CTGATAGAGACGATT YPTS_0941 1070038 - 1068434 - | chitin-binding domain-containing protein TERM 1126 1070023 - 1070037 + g 81 -5.8 -4.88258 | overlap 1070004 GATGTAGTTGTGCAT TGAAAT GTA ATTTCA TTTTATTATCCTTTT YPTS_0942 1070540 - 1070235 - | putative holin protein TERM 1127 1070417 - 1070427 + g 73 -3.2 -4.89729 | overlap 1070415 ATATTGCTGATATCT TCTC TCG GAGG TTTTTAGATTTTGTA YPTS_0943 1070967 - 1071425 + | phosphoribosyltransferase TERM 1128 1071437 - 1071466 + F 100 -9.3 -4.69326 | overlap 1071442 ATAATTTACTGTTCT TTAAGCGTCCGGT GCCT GCCGGACGTTTCA TTTTCTCTTCAGTAT TERM 1129 1071442 - 1071461 + F 100 -11.4 -4.32571 | overlap 1071437 TTACTGTTCTTTAAG CGTCCGGT GCCT GCCGGACG TTTCATTTTCTCTTC YPTS_0944 1071552 - 1072799 + | protein of unknown function DUF1100 hydrolase family protein YPTS_0945 1072859 - 1073260 + | transcriptional regulator Crl TERM 1130 1073316 - 1073346 + F 78 -9.1 -3.83205 | CATAAACTGTCCCCA TTACCCCCTTTCT GCACA ATAAAGGGGGTGA TTTCGTATCAAGCCT YPTS_0946 1073437 - 1074540 + | glutamate 5-kinase YPTS_0947 1074550 - 1075809 + | gamma-glutamyl phosphate reductase TERM 1131 1075896 - 1075882 - f 78 -5.7 -4.7497 | opp_overlap 1075893, overlap 1075893 CTGATTGATTAAAAA TCGCT AGTAA AGCGA CATGTGGCAATTTGC TERM 1132 1075920 - 1075893 - f 100 -13.6 -3.75863 | gap 1, opp_overlap 1075893, overlap 1075882 AAAATCGCTAGTAAA GCGACATGTGGCA ATT TGCCA-ATGTCGC TTTTTTTTCAAATCA TERM 1133 1075893 - 1075920 + F 100 -13.6 -5.78622 | gap 1, opp_overlap 1075882 1075893 AAAATCGCTAGTAAA GCGACATGTGGCA ATT TGCCA-ATGTCGC TTTTTTTTCAAATCA YPTS_0948 1076137 - 1076895 + | YcgR family protein YPTS_0949 1077093 - 1077347 + | hypothetical protein TERM 1134 1077631 - 1077617 - g 80 -2.8 -5.39721 | GCAGCAGATAAAAAA CTCACT AAT ATTGAG ATACAACAAGGGCTG YPTS_0950 1077593 - 1078114 + | methyltransferase type 11 TERM 1135 1079148 - 1079124 - g 71 -6.4 -4.21194 | opp_overlap 1079138, overlap 1079140 TTGCACCAGCTAAAA GATCCGCGTT TACAG ATCGCAGATC GTTCTGCGGAGCAGT YPTS_0951 1078845 - 1079402 + | putative methyltransferase TERM 1136 1079574 - 1079594 + F 75 -3.2 -5.21709 | opp_overlap 1079565 AGTAAACCTGTTCAA CCGGCC AATAATAAC GGTCGG TTTTTTGATGTCGAA YPTS_0952 1079649 - 1080173 + | shikimate kinase YPTS_0953 1080670 - 1080957 + | hypothetical protein TERM 1137 1081013 - 1080979 - T 74 -10 -3.08133 | opp_overlap 1080972 1080970 1080981 TATTGAGTTAGCGAA TCTGTCACCCTCTCTA TGC CAGAGGGGGCGACATA TCATCTATCCTTTTT TERM 1138 1080981 - 1081011 + T 86 -11.9 -2.91086 | opp_overlap 1080979, overlap 1080972 1080970 TTGAGTTAGCGAATC TGTCACCCTCTCT ATGCC AGAGGGGGCGACA TATCATCTATCCTTT YPTS_0954 1082090 - 1081179 - | putative exonuclease RdgC TERM 1139 1082105 - 1082129 + H 84 -11.3 -3.14132 | TAGTGTTATCCTTGG CTCGGGCGCGC CTG GAGCGCGCGAG TTAATCAACGCAGGG TERM 1140 1082356 - 1082374 + H 88 -9.6 -4.25104 | TATCCAGATCACAGT TATCCTGC CTA GCAGGGTA TTTTGATCGCGAGAA YPTS_0955 1082423 - 1083337 + | ROK family protein YPTS_0956 1087495 - 1083806 - | SMC domain-containing protein TERM 1141 1086269 - 1086298 + g 80 -6.5 -4.81083 | overlap 1086260 1086292 GGCATAGTCTGCTAG CTGTTGCAGGC GTTGATGG GTCTGCAATAG TTTTTGCTCATTCAG YPTS_0957 1088736 - 1087492 - | nuclease SbcCD, D subunit YPTS_0958 1089004 - 1089693 + | two component transcriptional regulator TERM 1142 1090954 - 1090964 + G 76 -2.4 -5.29885 | ATGAGTGAAATTGGT CTGG GTA CCCG TTTTATTTTTACCTT YPTS_0959 1089718 - 1091034 + | PAS/PAC sensor signal transduction histidine kinase TERM 1143 1091860 - 1091842 - g 79 -11 -3.54307 | AACAGTGGTGTTAAA TCACTGCC GTT GGCAGCGA GTGGGCAAGATTTTG YPTS_0960 1091056 - 1092102 + | phosphate binding protein YPTS_0961 1092576 - 1093895 + | branched-chain amino acid transport system II carrier protein TERM 1144 1093920 - 1093940 + F 100 -11.1 -4.72272 | overlap 1093934 AATAGAGTATTTTTA GCCACGGTT AAT ATCCGTGGC TTTTTGCTGAAAAAA TERM 1145 1094770 - 1094787 + G 78 -11.3 -3.36492 | opp_overlap 1094763, overlap 1094770 GGAATCAAGTGGGCA CGAACGG TAGT CCGTTCG TTCTGACCTTCCAGC YPTS_0962 1093971 - 1095362 + | amino acid permease-associated region TERM 1146 1095404 - 1095430 + F 100 -6.5 -5.85244 | opp_overlap 1095404 GATAATCGATACAAA GCCGGGGTACA GTTCA TCTGTCCCGGC TTTTTTCTTTTAATT TERM 1147 1096301 - 1096317 + G 77 -2.9 -5.26918 | overlap 1096302 CGATAGCGGGCCTGA TTGGGTC GCG GACCAAG TTTTTTATCAGATCT YPTS_0963 1095957 - 1097786 + | alpha amylase catalytic region TERM 1148 1097823 - 1097858 + F 87 -4.7 -5.52986 | opp_overlap 1097837 1097841, overlap 1097841 GATAACTCACTAGAG CAGCTCAGGGATAAC AATTCA GTGATAACTGAGCTG TTTTTTTGCTCCAGT YPTS_0964 1097941 - 1098621 + | short-chain dehydrogenase/reductase SDR TERM 1149 1098690 - 1098661 - T 95 -12.3 -3.35813 | opp_overlap 1098660 1098661 1098663 CTCCACTCTAATGAA TATCCCCCATCAA TAGT TCGATAGGGGATA ATATTTTCAGATACT TERM 1150 1098857 - 1098845 - T 75 -10.5 -2.76468 | overlap 1098842 TAGTAGCCAATAGCA GCCCC TGC GGGGC GACGGACATCATTGG YPTS_0965 1100592 - 1098829 - | gamma-glutamyltransferase TERM 1151 1100940 - 1100917 - R 100 -12.5 -5.44119 | opp_overlap 1100917 TCTAGGGGAAAAAAA GCCAGTCAG AGTGAA CTGACTGGC TTGATAGCCCCCGAG TERM 1152 1100917 - 1100940 + r 93 -12.5 -3.14132 | opp_overlap 1100917 TCTAGGGGAAAAAAA GCCAGTCAG AGTGAA CTGACTGGC TTGATAGCCCCCGAG YPTS_0966 1101583 - 1100981 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 1153 1101705 - 1101715 + r 73 -5.4 -4.67641 | GATAGTTTTTGCCTA TCGT TAA ACGA TTTTAGTTTTGCAGT YPTS_0967 1102510 - 1101902 - | hypothetical protein YPTS_0968 1102686 - 1103756 + | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 1154 1103840 - 1103814 - f 81 -7.4 -4.68593 | GTGATCAGGCAAAAA CAACATCAGA CTGTTTC TCTGATGCTG GAGGTTATGTGAAGT TERM 1155 1103881 - 1103902 + G 71 -9.3 -3.57462 | opp_overlap 1103873, overlap 1103895 AAAAACTGATGGGCG CGCCCGCCG TGGT CGGCTGGTG TTTGAGCGTGGCGTG TERM 1156 1104337 - 1104364 + G 88 -12 -3.74872 | gap 1, opp_overlap 1104331 1104330 GATGGAAATGTCACT GCGCTGGGCTGCT CGT AGCCGCC-AGCGC TTTGATGAGCTGAAT YPTS_0969 1103849 - 1104973 + | queuine tRNA-ribosyltransferase TERM 1157 1105159 - 1105141 - g 79 -9.6 -3.90112 | opp_overlap 1105140 TCCGGCTCAAGGAAA CAGCATGA CCT CCATGCTG ATCATGCTGGTAGTA YPTS_0970 1105085 - 1105420 + | preprotein translocase, YajC subunit TERM 1158 1105587 - 1105557 - g 77 -10.5 -3.53091 | gap 1 ATCCGGCTGTTCAAA TCACTGGTGCGCGA GGAA TCGC-CGCCAGTGA GACAACGCTGGTCCA YPTS_0971 1105481 - 1107295 + | protein-export membrane protein SecD YPTS_0972 1107306 - 1108274 + | protein-export membrane protein SecF TERM 1159 1108334 - 1108306 - f 71 -8.9 -3.24924 | opp_overlap 1108309, overlap 1108304 1108308 1108309 GTTCGATGTATAAGA TAGCCCTGAAACT GTT AGTTTCAGGGTTT TTTTATCAGTAAATT TERM 1160 1108332 - 1108308 - f 84 -11.5 -3.18945 | opp_overlap 1108309, overlap 1108306 1108304 1108309 TCGATGTATAAGATA GCCCTGAAACT GTT AGTTTCAGGGT TTTTTTATCAGTAAA TERM 1161 1108309 - 1108331 + F 100 -15 -5.64274 | opp_overlap 1108308 1108306 1108304 1108309 CGATGTATAAGATAG CCCTGAAACT GTT AGTTTCAGGG TTTTTTTATCAGTAA TERM 1162 1108331 - 1108309 - f 100 -15 -2.51045 | opp_overlap 1108309, overlap 1108308 1108306 1108304 CGATGTATAAGATAG CCCTGAAACT GTT AGTTTCAGGG TTTTTTTATCAGTAA TERM 1163 1109048 - 1109031 - g 71 -6.3 -4.13945 | opp_overlap 1109033, overlap 1109038 AGGCTTACCCGAAAA TAGCGAA GGAA TCCGCTA AGTTGCAGCGATCCC TERM 1164 1109300 - 1109318 + G 79 -11.8 -3.26807 | opp_overlap 1109298, overlap 1109298 CGAACGATAGAGAGT CAGACTGA AAA TCAGTCTG TGGTTTTTAAATCAT TERM 1165 1109711 - 1109697 - g 83 -8.6 -4.54608 | TAAAAGAAACAGAAA CCAGTA AAT TACTGG ATGCGAGCATCAAAG YPTS_0973 1108526 - 1109848 + | hypothetical protein YPTS_0974 1109919 - 1110368 + | ATP-cone domain-containing protein YPTS_0975 1110518 - 1111627 + | riboflavin biosynthesis protein RibD YPTS_0976 1111763 - 1112233 + | 6,7-dimethyl-8-ribityllumazine synthase TERM 1166 1112344 - 1112328 - g 73 -5.1 -4.57569 | opp_overlap 1112331, overlap 1112331 GCAGTTGTCTAAAAA CGACATC GCT GATGTTG AATTACAGTTCCTGT TERM 1167 1112416 - 1112456 + G 73 -3.3 -4.88918 | opp_overlap 1112431, overlap 1112418 GAATTGCTGTCAGGG GTTGCGGTTAATGCAGC ATCTCTG GATGCATTAATGGCACC TTTTCTTTCCCGTCA YPTS_0977 1112254 - 1112670 + | NusB antitermination factor TERM 1168 1112882 - 1112848 - f 100 -21.8 -2.84059 | opp_overlap 1112850 1112854, overlap 1112850 1112854 GATATACATTAACGA TATAAATTAAGGCCGG TAT CCGGCCTTAATTTATA TATCAGTTAACATTT TERM 1169 1112880 - 1112850 - f 100 -20 -2.96235 | opp_overlap 1112850 1112854, overlap 1112848 1112854 TATACATTAACGATA TAAATTAAGGCCGG TAT CCGGCCTTAATTTA TATATCAGTTAACAT TERM 1170 1112850 - 1112880 + F 100 -20 -2.95091 | opp_overlap 1112848 1112850 1112854, overlap 1112854 TATACATTAACGATA TAAATTAAGGCCGG TAT CCGGCCTTAATTTA TATATCAGTTAACAT TERM 1171 1112876 - 1112854 - f 100 -16.4 -4.14541 | opp_overlap 1112850 1112854, overlap 1112850 1112848 CATTAACGATATAAA TTAAGGCCGG TAT CCGGCCTTAA TTTATATATCAGTTA TERM 1172 1112854 - 1112876 + F 100 -16.4 -4.15061 | opp_overlap 1112854 1112850 1112848, overlap 1112850 CATTAACGATATAAA TTAAGGCCGG TAT CCGGCCTTAA TTTATATATCAGTTA YPTS_0978 1112911 - 1113900 + | thiamine-monophosphate kinase YPTS_0979 1113893 - 1114378 + | phosphatidylglycerophosphatase A TERM 1173 1114417 - 1114446 + T 100 -12.3 -4.13973 | opp_overlap 1114421, overlap 1114421 AGAGAGACTATCACG TAAAGGCATAACC CACG GGCTATGCCTTTA TTGTTTCTGATATCT TERM 1174 1114442 - 1114421 - T 84 -10.9 -3.6959 | opp_overlap 1114417 1114421 AGACTATCACGTAAA GGCATAACC CACG GGCTATGCC TTTATTGTTTCTGAT TERM 1175 1114421 - 1114442 + T 100 -8.7 -4.63952 | opp_overlap 1114421, overlap 1114417 AGACTATCACGTAAA GGCATAACC CACG GGCTATGCC TTTATTGTTTCTGAT YPTS_0980 1116378 - 1114519 - | deoxyxylulose-5-phosphate synthase YPTS_0981 1117454 - 1116534 - | polyprenyl synthetase TERM 1176 1117098 - 1117071 - G 81 -6.2 -4.90471 | gap 1 AGCCAAAATAGAAAA GGCCAGCGTTTGC AGT GCAT-CACCGGCC AAAATAGCGTGGGCC YPTS_0982 1117713 - 1117459 - | exodeoxyribonuclease VII, small subunit TERM 1177 1117667 - 1117685 + g 73 -8.2 -3.96148 | TCACTGAGTGATGTT TCAAAGCT GGC GGCTTTGA TTTCTGGTGAAGCGG YPTS_0983 1117795 - 1117965 + | hypothetical protein YPTS_0984 1118063 - 1119514 + | thiamine biosynthesis/tRNA modification protein ThiI TERM 1178 1119630 - 1119602 - T 73 -7.3 -4.1021 | opp_overlap 1119602 1119602 CCCGATAATTATAAA TTCCTGGCGGCAA CAC TAGCTGCCAGGCA ATTTCTTCCGCCTTT TERM 1179 1119602 - 1119630 + T 72 -9.5 -3.109 | opp_overlap 1119602, overlap 1119602 CCCGATAATTATAAA TTCCTGGCGGCAA CAC TAGCTGCCAGGCA ATTTCTTCCGCCTTT TERM 1180 1119602 - 1119631 + T 76 -7.9 -4.19974 | gap 1, opp_overlap 1119602, overlap 1119602 CCCGATAATTATAAA TT-CCTGGCGGCAA CAC TAGCTGCCAGGCAA TTTCTTCCGCCTTTT YPTS_0985 1120172 - 1119582 - | DJ-1 family protein YPTS_0986 1121046 - 1120135 - | 2-dehydropantoate 2-reductase YPTS_0987 1121278 - 1121769 + | hypothetical protein TERM 1181 1121830 - 1121867 + T 76 -7.7 -4.13014 | opp_overlap 1121834, overlap 1121834 AAACGGTATAACGAC TAAAGGGGCAACGGCTT TTTC ATGTCTTTGCCCCTTAA TTTTGGCCCTATAAA TERM 1182 1121834 - 1121863 + T 73 -8.5 -3.67622 | opp_overlap 1121834, overlap 1121830 GGTATAACGACTAAA GGGGCAACGGCTT TTTC ATGTCTTTGCCCC TTAATTTTGGCCCTA YPTS_0988 1123257 - 1121893 - | major facilitator transporter TERM 1183 1123672 - 1123710 + r 100 -11 -4.48299 | opp_overlap 1123676, overlap 1123676 AACAGGGAACAAATA CAAAGTGGCTGGCAAGAG CGA TTCCTGCCAGCCACTTGA TTTATTTCACTCTCA TERM 1184 1123706 - 1123676 - R 100 -17.7 -4.46072 | opp_overlap 1123672 1123676 GGGAACAAATACAAA GTGGCTGGCAAGA GCGAT TCCTGCCAGCCAC TTGATTTATTTCACT TERM 1185 1123676 - 1123706 + r 100 -16.2 -3.76486 | opp_overlap 1123676, overlap 1123672 GGGAACAAATACAAA GTGGCTGGCAAGAG CGA TTCCTGCCAGCCAC TTGATTTATTTCACT YPTS_0989 1124628 - 1123741 - | protoheme IX farnesyltransferase YPTS_0990 1124974 - 1124642 - | cytochrome o ubiquinol oxidase subunit IV YPTS_0991 1125588 - 1124974 - | cytochrome o ubiquinol oxidase, subunit III TERM 1186 1125287 - 1125300 + g 71 -6.7 -4.15854 | AAGGTGAAGCCCAAC CAGGT ATTG ACCTG TTTTACACTCCCTTT TERM 1187 1125525 - 1125565 + g 82 -12 -3.17714 | gap 2, overlap 1125531 1125537 ATACTTTCGTCGCTC CCGCATCGTGATGCCCATGC TCT GCATGGGC-T-ACGTTGTGG TTAGTCAGAGTTTCA TERM 1188 1125531 - 1125559 + g 71 -9 -3.54029 | gap 2, overlap 1125525 1125537 TCGTCGCTCCCGCAT CGTGATGCCCATGC TCT GCATGGGC-T-ACG TTGTGGTTAGTCAGA TERM 1189 1125537 - 1125555 + g 90 -14.6 -2.63614 | overlap 1125531 1125525 CTCCCGCATCGTGAT GCCCATGC TCT GCATGGGC TACGTTGTGGTTAGT YPTS_0992 1127569 - 1125578 - | cytochrome o ubiquinol oxidase, subunit I YPTS_0993 1128530 - 1127574 - | ubiquinol oxidase, subunit II TERM 1190 1127643 - 1127658 + g 74 -2.6 -5.09173 | gap 1, overlap 1127636 1127651 1127655 CATATCCATGCCTTT TGGC-AT GTC ATGGCCA TTTTTTGGCATGTTC TERM 1191 1128658 - 1128673 + r 80 -9 -3.95674 | ACTTTATGTTAAGGG GGTCAC AGAT GTGACC TTATTTGGCAATTTT TERM 1192 1128853 - 1128888 + r 72 -7.1 -4.04295 | opp_overlap 1128851 1128853 1128855, overlap 1128855 AGGTAAATTAAAATA T-ATTTCGAGGTGTCCT AAAT AGG-CACCTCGGAATCA TTTAGTTATAGTTAG TERM 1193 1128855 - 1128885 + r 83 -11.3 -3.05266 | gap 1, opp_overlap 1128853 1128851 1128855, overlap 1128853 GTAAATTAAAATATA TTTCGAGGTGTCCT AAAT AGG-CACCTCGGAA TCATTTAGTTATAGT TERM 1194 1128885 - 1128855 - R 73 -9.1 -3.51998 | gap 1, opp_overlap 1128855 1128853, overlap 1128853 1128851 GTAAATTAAAATATA TTTCGAGGTGTCCT AAAT AGG-CACCTCGGAA TCATTTAGTTATAGT YPTS_0994 1129667 - 1128900 - | hypothetical protein TERM 1195 1129821 - 1129807 - R 85 -2.1 -5.75342 | TTTTTTTAAAAAAAA CATGC AACAA ACATG AAAAGTTGTGATTTA TERM 1196 1129936 - 1129909 - R 86 -3.4 -5.59879 | GATAAACACAAAAAA GCCAGTGC ACAAACTGAACA GCACCGGC TTTATGTCACTTATG YPTS_0995 1131437 - 1129959 - | AmpG-related permease TERM 1197 1130309 - 1130291 - G 71 -3 -4.91194 | overlap 1130293 AGAATAAATAGAAAA GTGGCC AGCCATG GGCCTC TACAAACCAACCGGC TERM 1198 1131231 - 1131213 - G 75 -5.9 -4.58395 | overlap 1131193 CCGACGCCCTAAAAA GGACGGC GTGTA GCGGTCC ATCAGCGGGGACCAA TERM 1199 1131450 - 1131478 + r 73 -8.2 -3.65991 | gap 1, opp_overlap 1131448 CATAATAAATCTACC TGCTCTGCCGCAA GGTA TCG-GGCAGAGCA TTCTGTTGAGCAACT YPTS_0996 1132132 - 1131554 - | hypothetical protein YPTS_0997 1132481 - 1132801 + | BolA family protein TERM 1200 1132868 - 1132893 + F 91 -10.5 -4.12532 | opp_overlap 1132874, overlap 1132870 1132874 AGTAGATGAGAATTT TACAAACGGCT CTAG GGCCGTTTGTG TTTCTGTATAGGCGA TERM 1201 1132870 - 1132891 + F 84 -10.9 -3.65996 | opp_overlap 1132874, overlap 1132868 1132874 TAGATGAGAATTTTA CAAACGGCT CTAG GGCCGTTTG TGTTTCTGTATAGGC TERM 1202 1132874 - 1132887 + F 73 -5.9 -4.44187 | opp_overlap 1132874, overlap 1132870 1132868 TGAGAATTTTACAAA CGGCT CTAG GGCCG TTTGTGTTTCTGTAT YPTS_0998 1132960 - 1133145 + | hypothetical protein YPTS_0999 1133218 - 1134522 + | trigger factor TERM 1203 1134540 - 1134562 + F 95 -9.2 -4.4959 | overlap 1134542 TTTTTCAGCGCATGA TGCTGGATGG GAC CCATTCAGTA TTTTGATTGATTAAG TERM 1204 1134542 - 1134560 + F 81 -9.6 -3.85043 | overlap 1134540 TTTCAGCGCATGATG CTGGATGG GAC CCATTCAG TATTTTGATTGATTA TERM 1205 1134577 - 1134602 + F 100 -11.1 -5.50723 | opp_overlap 1134577 ATTTTGATTGATTAA GCCCGTCGCCA TTAT TGGTCACGGGC TTTTTCTTTTGGTAA TERM 1206 1135156 - 1135169 + G 77 -6.7 -4.56597 | opp_overlap 1135156 TGGCTAACCTAATCA CAGCA CAGA TGCTG TTTTTGGAAGCCGAG YPTS_1000 1134984 - 1135607 + | ATP-dependent Clp protease, proteolytic subunit ClpP YPTS_1001 1135813 - 1137084 + | ATP-dependent Clp protease, ATP-binding subunit ClpX TERM 1207 1137136 - 1137118 - f 100 -13.2 -3.44527 | opp_overlap 1137118 CAGTTAGTATGACAA TGGGGGAT TTT ATCCCCCA TTTCTTTTTCCTCGC TERM 1208 1137118 - 1137136 + F 100 -13.2 -4.91852 | opp_overlap 1137118 CAGTTAGTATGACAA TGGGGGAT TTT ATCCCCCA TTTCTTTTTCCTCGC TERM 1209 1137222 - 1137236 + F 72 -10 -2.7752 | opp_overlap 1137212, overlap 1137221 TGAAACTCGTGATGA CTCGTG TTT CACGAG ATTTCCAGTAATCTG TERM 1210 1137731 - 1137721 - g 91 -3.2 -5.83226 | opp_overlap 1137725 AACTGAACAAAAAAA TCCC GCC GGAA GTGCTGGCTTCGCTG TERM 1211 1138533 - 1138515 - g 73 -7.4 -4.20712 | opp_overlap 1138513 1138515, overlap 1138508 CAGAAGATGGCAAAA GTGGGTGT GAA AAACCCAC TCTTCCTATTGGATG YPTS_1002 1137279 - 1139633 + | ATP-dependent protease La TERM 1212 1139667 - 1139694 + F 72 -6.3 -4.25873 | opp_overlap 1139667 ATTGATAAAACTAAT GCTGGTAAGTG AAATCC TGCTTGCCAGC TATTTTTTGTGCCGC YPTS_1003 1139851 - 1140123 + | histone family protein DNA-binding protein TERM 1213 1140227 - 1140208 - f 70 -9.3 -2.81609 | opp_overlap 1140208, overlap 1140200 1140207 AAGGTAAGATACAAG GCGCATC GTTTAT GATGCGC TTTTTTTTCGCTTAG TERM 1214 1140208 - 1140227 + F 100 -10 -5.86332 | opp_overlap 1140200 1140207 1140208 AAGGTAAGATACAAG GCGCATCG TTTA TGATGCGC TTTTTTTTCGCTTAG TERM 1215 1141577 - 1141567 - g 73 -4.6 -4.81083 | opp_overlap 1141564 CTTAAGCAGGAAAAA GCGC TTG ACGC TTATTATGCGCTACA YPTS_1004 1140424 - 1142310 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 1216 1142368 - 1142345 - f 100 -15.4 -4.68384 | opp_overlap 1142349, overlap 1142349 ACCGATGTAATAAAA GAAAGGTCGC TTTG GCGACCTTTC GCATATCTGTGATCT TERM 1217 1142364 - 1142349 - f 100 -10.4 -4.88795 | opp_overlap 1142349, overlap 1142345 ATGTAATAAAAGAAA GGTCGC TTTG GCGACC TTTCGCATATCTGTG TERM 1218 1142349 - 1142364 + F 82 -10.4 -3.66139 | opp_overlap 1142349 1142345 ATGTAATAAAAGAAA GGTCGC TTTG GCGACC TTTCGCATATCTGTG TERM 1219 1142587 - 1142572 - g 73 -2.4 -5.07107 | overlap 1142574 1142583 TAAAGTCTCAAAAAA GTCGCC TAAT AGCGCC GCAGATAACGGCGCT YPTS_1005 1142450 - 1142896 + | helix-hairpin-helix repeat-containing competence protein ComEA TERM 1220 1143017 - 1143060 + F 83 -8.8 -4.08945 | gap 1, opp_overlap 1143017 1143018 AAGTTGGTAAATCAA GCCGCCAGGC-GGTGCTGGCC ATC GGTAGGTATTGGTCTGGCGGC TTTTACCAACATAAT YPTS_1006 1143250 - 1143657 + | thioesterase superfamily protein YPTS_1007 1144441 - 1143743 - | exsB protein YPTS_1008 1146433 - 1144730 - | extracellular solute-binding protein TERM 1221 1144923 - 1144941 + g 76 -2.4 -5.19212 | overlap 1144924 GGCGCGCTTTCTATC TGCTGA ATGAAGG TCAGCG TTTTTTGCTGCTGGT YPTS_1009 1146538 - 1147359 + | Cof-like hydrolase TERM 1222 1147379 - 1147394 + T 100 -6.1 -5.8187 | ATAGCTATTAGCCAG CCGGA GAACCA TCCGG TTTTTTTCTTCCGTA TERM 1223 1147411 - 1147447 + T 100 -10.3 -4.74013 | TTTTTTCTTCCGTAG GCGGTTTGTCAGT GTTCATGCCTA GCTGACAAACCGC TTTTATCTCTTTGAA YPTS_1010 1148611 - 1147571 - | pyridoxal-5'-phosphate-dependent protein beta subunit TERM 1224 1148258 - 1148247 - G 72 -5.8 -4.43844 | opp_overlap 1148257, overlap 1148249 GCATGATCGACAAAA TGGC AACG GCCA CCGTAGAAGGTGATT YPTS_1011 1148737 - 1149198 + | AsnC family transcriptional regulator TERM 1225 1149912 - 1149893 - g 86 -12.2 -3.61398 | opp_overlap 1149889 TTCTTTGCTTAATAA TCAGGCTC AAGA GAGCCTGA CCAGTATTCGCATGA YPTS_1012 1149300 - 1151066 + | ABC transporter related TERM 1226 1152648 - 1152633 - g 75 -3.2 -5.0538 | opp_overlap 1152633 1152635, overlap 1152635 GGTGATTCGAAAAAA TACCAC GCTG GTGGTT ATTGCTCATCGCCTT YPTS_1013 1151059 - 1152882 + | ABC transporter related TERM 1227 1152891 - 1152912 + F 100 -13.7 -4.22554 | GAGTTAAGCAGCACG CGTGGGGTG ATGT CGCCCCACG TTATTTATTGACTCA TERM 1228 1153540 - 1153515 - g 74 -4.1 -5.00138 | gap 1 TACCCAAAGTAAAAA TTGAT-ATCGCC ATC GCCGATGATCAA TTAGACGAAGTGATT YPTS_1014 1153334 - 1153672 + | nitrogen regulatory protein P-II YPTS_1015 1153709 - 1155001 + | ammonium transporter YPTS_1016 1154964 - 1155056 + | hypothetical protein TERM 1229 1155211 - 1155166 - T 72 -7.5 -4.04089 | opp_overlap 1155171 1155173 1155176 1155178, overlap 1155173 1155176 AAAAATACATAATAA TGATGAACTACAGGGGCGATG GTGA CATCGCCCCTGTGCTATTTCA TTGATTCATCAACTG TERM 1230 1155171 - 1155206 + T 100 -12.6 -4.01419 | opp_overlap 1155166 1155173 1155176, overlap 1155173 1155176 1155178 TACATAATAATGATG AACTACAGGGGCGATG GTGA CATCGCCCCTGTGCTA TTTCATTGATTCATC TERM 1231 1155203 - 1155173 - T 100 -16.3 -3.34242 | gap 1, opp_overlap 1155171 1155173 1155176 1155178, overlap 1155166 1155176 CATAATAATGATGAA CTACAGGGGCGATG GTGA CATCGCCCCTGT-G CTATTTCATTGATTC TERM 1232 1155173 - 1155204 + T 100 -15.2 -3.59031 | opp_overlap 1155173 1155166 1155176, overlap 1155171 1155176 1155178 CATAATAATGATGAA CTACAGGGGCGATG GTGA CATCGCCCCTGTGC TATTTCATTGATTCA TERM 1233 1155176 - 1155201 + T 100 -19.1 -2.906 | opp_overlap 1155173 1155166 1155176, overlap 1155173 1155171 1155178 AATAATGATGAACTA CAGGGGCGATG GTGA CATCGCCCCTG TGCTATTTCATTGAT TERM 1234 1155201 - 1155176 - T 100 -19.1 -2.8293 | opp_overlap 1155176 1155173 1155171 1155178, overlap 1155173 1155166 AATAATGATGAACTA CAGGGGCGATG GTGA CATCGCCCCTG TGCTATTTCATTGAT TERM 1235 1155178 - 1155199 + T 100 -15.9 -2.9955 | opp_overlap 1155176 1155173 1155166, overlap 1155176 1155173 1155171 TAATGATGAACTACA GGGGCGATG GTGA CATCGCCCC TGTGCTATTTCATTG YPTS_1017 1156123 - 1155263 - | acyl-CoA thioesterase II TERM 1236 1155959 - 1155975 + g 74 -6.5 -4.41616 | AAATGAGTGAACAGT CCGTTCT GCG GGGACGG TTTGTTTCGCAGCAT YPTS_1018 1156380 - 1156901 + | putative lipoprotein YPTS_1019 1157600 - 1157037 - | methylated-DNA--protein-cysteine methyltransferase TERM 1237 1157926 - 1157937 + r 79 -3 -5.27335 | TTGTCGTGAACGCTC TCTA TCAG TAGA TTTTTATTTCCGGCA TERM 1238 1157996 - 1158012 + r 76 -6.6 -4.46652 | AAAATAAGATTCCTC CCATTC TGAAC GAATGG TTTGATTTTTATTTA YPTS_1020 1158535 - 1158332 - | hemolysin expression modulating family protein YPTS_1021 1158952 - 1158584 - | hypothetical protein YPTS_1022 1159464 - 1159111 - | hypothetical protein TERM 1239 1159278 - 1159288 + g 75 -5.4 -4.8048 | overlap 1159280 1159280 TCATTGAATACTGGT TCTC TTT GAGA TTTTTAATCTCAAGA TERM 1240 1160236 - 1160208 - R 88 -6.7 -5.24551 | gap 1, opp_overlap 1160208 GCAAATGAATAAAAA GGCCCGTTG-GC GTTAGT GCACAAAGGGCC TTTTGGGGACTGATG TERM 1241 1160208 - 1160236 + r 73 -7.4 -4.10161 | gap 1, opp_overlap 1160208 GCAAATGAATAAAAA GGCCCGTTG-GCG TTAG TGCACAAAGGGCC TTTTGGGGACTGATG YPTS_1023 1160472 - 1160329 - | ribosomal protein L36 YPTS_1024 1160748 - 1160488 - | ribosomal protein L31 TERM 1242 1160886 - 1160901 + r 100 -11.8 -3.83998 | opp_overlap 1160886 GCTCAGCAATAAAAA GGCCGC TTGC GCGGCC TTTAGTATGAAATGA TERM 1243 1160901 - 1160886 - R 100 -11.8 -5.1356 | opp_overlap 1160886 GCTCAGCAATAAAAA GGCCGC TTGC GCGGCC TTTAGTATGAAATGA YPTS_1025 1164086 - 1160934 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1244 1163960 - 1163999 + g 88 -12.3 -3.78775 | TGGCGGCAATTGTAA TTGCCGGTGGCGCAATG GTCGGA TATTGCGCTACTGGTAA TTTCATGATCGCAAG YPTS_1026 1165290 - 1164103 - | RND family efflux transporter MFP subunit TERM 1245 1165261 - 1165279 + g 78 -6 -4.77438 | TACCAGAATTGCAGC CAGAGG CATTACC CCTCTG TTTTTGCTCATAGAT TERM 1246 1165548 - 1165576 + G 76 -9.5 -3.74747 | overlap 1165551 TCTTACCGATATTGC TATCGCTGCGGGT GTA ACCCGAGGCGCTA TTTACTGGCACTTCA TERM 1247 1165551 - 1165573 + G 72 -11.2 -2.66873 | overlap 1165548 TACCGATATTGCTAT CGCTGCGGGT GTA ACCCGAGGCG CTATTTACTGGCACT YPTS_1027 1165435 - 1166091 + | TetR family transcriptional regulator YPTS_1028 1166104 - 1166457 + | DsrE family protein YPTS_1029 1166753 - 1170115 + | MscS mechanosensitive ion channel YPTS_1030 1170627 - 1170472 - | hypothetical protein YPTS_1031 1171334 - 1170798 - | primosomal replication priB and priC TERM 1248 1171487 - 1171502 + r 76 -7.6 -4.15222 | opp_overlap 1171486 TGGTCGGCACTACAT GCGTTA ATGA TAACGC TTTCTTGACGAAAGT YPTS_1032 1171697 - 1171533 - | hypothetical protein YPTS_1033 1171756 - 1171890 + | hypothetical protein YPTS_1034 1172154 - 1172717 + | adenine phosphoribosyltransferase TERM 1249 1172867 - 1172881 + F 75 -5.7 -4.58424 | GTTAAGGTATTCCAG CCAGA CAAAC TCTGG TTTTATATCGTCATA TERM 1250 1174744 - 1174703 - g 100 -10 -5.58179 | overlap 1174709 1174742 GACCACAACAAAAAA GAATGAGCCGGCGGCGCC AGGAAA AGCGCGGCCGGCAAACTC AGCACTGGAGCGTTT TERM 1251 1174738 - 1174709 - g 93 -14.2 -3.2756 | overlap 1174703 AACAAAAAAGAATGA GCCGGCGGCGCC AGGAAA AGCGCGGCCGGC AAACTCAGCACTGGA TERM 1252 1174847 - 1174821 - g 76 -7.3 -4.46675 | overlap 1174838 ACGGAAGAGAAGAAA CCAGCGAAAAA AGAAG CTTATCGCTGG ACCGCGAAAAATCAA YPTS_1035 1173372 - 1175348 + | DNA polymerase III, subunits gamma and tau TERM 1253 1175477 - 1175465 - g 75 -3.4 -5.17353 | AGATGCAGGAAAAAA TGCA GCAGA TGCA GGAAGAAGTCGCCAA TERM 1254 1175712 - 1175681 - g 73 -3.6 -4.98672 | CGCAAAAAGAGAAAA TGGCCTCTGTATCC AATG GGATGCAATTGCCA CCAGGCTTTAAGATG YPTS_1036 1175404 - 1175736 + | hypothetical protein YPTS_1037 1175766 - 1176341 + | recombination protein RecR TERM 1255 1176731 - 1176762 + G 74 -9.6 -3.57792 | opp_overlap 1176729, overlap 1176721 GATGGCGAACTGAGA GTGCGTTTATCTTT TGAT AAAGAGAAACGTAC TTTAACCCTGAGTGA YPTS_1038 1176533 - 1178407 + | heat shock protein Hsp90 TERM 1256 1178448 - 1178420 - f 100 -6.8 -5.66684 | gap 1, opp_overlap 1178420 TAATCGATAAAAAAA CACCCTTGTTCAA CGTA TTGC-CAAGGGTG TTTTTTATTGTACCT TERM 1257 1178420 - 1178448 + F 91 -6.8 -5.56673 | gap 1, opp_overlap 1178420 TAATCGATAAAAAAA CACCCTTGTTCAA CGTA TTGC-CAAGGGTG TTTTTTATTGTACCT YPTS_1039 1178634 - 1179278 + | adenylate kinase TERM 1258 1179294 - 1179324 + F 100 -17 -3.59979 | opp_overlap 1179301, overlap 1179287 1179286 TTCTGGATGGCCTTA TAGCTAAGGCGGTT TAA GGCCGCCTTAGCTA TTTCAAGTAAGAAGG YPTS_1040 1179368 - 1180330 + | ferrochelatase TERM 1259 1180848 - 1180860 + F 80 -2.7 -5.53288 | CTTTTTTGTTTCTAT TTTAG TCA CTGAA TTTTTTTGACTTAAG TERM 1260 1181492 - 1181506 + G 86 -7.8 -4.90266 | opp_overlap 1181492 CTTTTACGAATTGAA GGTCCT CAA GGGACC TTTTTCGTTCGTGAA YPTS_1041 1180928 - 1181917 + | oxidoreductase FAD/NAD(P)-binding subunit TERM 1261 1181933 - 1181918 - f 72 -6.2 -4.25256 | GTGCCATCAAAATAA CTTTGA GAGA TCAAAG TAATACGTAATGGAG YPTS_1042 1181955 - 1182728 + | glucose-1-phosphate cytidylyltransferase YPTS_1043 1182733 - 1183806 + | CDP-glucose 4,6-dehydratase YPTS_1044 1183824 - 1185137 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 1262 1185148 - 1185163 + F 100 -9 -6.02914 | opp_overlap 1185148 1185147 1185150 TTTAACAGGAGCAAG GAGGCA ACAC TGCCTC TTTTTTTTATATGAA YPTS_1045 1185174 - 1186031 + | NAD-dependent epimerase/dehydratase YPTS_1046 1186032 - 1187315 + | O-antigen synthesis protein WbyH TERM 1263 1188687 - 1188725 + G 100 -17.9 -4.2535 | opp_overlap 1188698 1188701, overlap 1188723 ATCGTTATTTTCTGG TGGACTGATAATATTAT TATCC ATAATATTATCAGTCCA TTTTAAATATGGTGT YPTS_1047 1187506 - 1188849 + | O-unit flippase-like protein TERM 1264 1189330 - 1189315 - g 75 -3.4 -5.16151 | overlap 1189309 TAAAGTCAATAAAAA TATTTT ATAT AAAATA AGTAAAAAAATATTT YPTS_1048 1188860 - 1189852 + | glycosyl transferase family protein TERM 1265 1189898 - 1189930 + T 75 -8.7 -3.57674 | opp_overlap 1189901 1189928 1189929, overlap 1189901 1189928 TATTTTGACCATTAC GAATATTAGGTTATA TAA TATAATCGAATATTC TCTTTATAATAGAAT YPTS_1049 1190680 - 1190435 - | hypothetical protein TERM 1266 1191114 - 1191093 - g 79 -3.2 -5.28176 | GCCATTTATAAAAAA TAAAATAA AGAAAA TTATTTTA GATGAAAAGATAGAT TERM 1267 1191306 - 1191288 - g 79 -2.5 -5.42131 | gap 1, opp_overlap 1191288 TAAGGATATAAAAAA TGCGA-AT GCAT ATATCGCA TTGACTGAACATGTC YPTS_1050 1190866 - 1191975 + | glycosyl transferase group 1 YPTS_1051 1192055 - 1193140 + | hypothetical protein TERM 1268 1193536 - 1193546 + G 74 -2.6 -5.04868 | opp_overlap 1193536 ATCCTTTCAATGAAT TAAA GTT TTTA TTTTCTTTAGTTTCA TERM 1269 1194409 - 1194396 - g 71 -3.9 -4.72272 | overlap 1194376 CTTGTCGAGGAAAAA TTTTC TGAA GAAAA GATAATCTCACAATA YPTS_1052 1193373 - 1194470 + | glycosyl transferase group 1 YPTS_1053 1194695 - 1195528 + | NAD-dependent epimerase/dehydratase YPTS_1054 1195531 - 1196559 + | NAD-dependent epimerase/dehydratase TERM 1270 1197070 - 1197082 + G 75 -5.5 -4.73108 | AGGATCAGTATGCTG CTACC TTT GGTGG TTTTAATTTTATGGA YPTS_1055 1196577 - 1197605 + | GHMP kinase YPTS_1056 1197593 - 1198183 + | phosphoheptose isomerase TERM 1271 1198732 - 1198711 - g 93 -6.7 -5.48825 | gap 1, opp_overlap 1198711 1198716 1198721, overlap 1198715 TACTATCTAAAAAAA TCATTGAGGA TTA TCCTCA-TGA TAAATTCTCTTTTGA YPTS_1057 1198185 - 1198862 + | nucleotidyl transferase YPTS_1058 1198859 - 1199389 + | histidinol-phosphate phosphatase family protein TERM 1272 1199422 - 1199437 + F 86 -2.6 -5.75342 | gap 1 CTATGCCTACTCATA CTCA-CA CTT TGATGAG TTTTTTTTGGGGAGA YPTS_1059 1199624 - 1199806 + | hypothetical protein YPTS_1060 1199864 - 1201015 + | lipopolysaccharide biosynthesis protein TERM 1273 1201033 - 1201069 + F 76 -6.6 -4.46155 | gap 1, opp_overlap 1201037, overlap 1201037 TTTAAACGAATTTAT C-TAACGGCTGGGTGAG GTTT CTCATCTGGCCGTTCTG TTTTATCGCTCTGTA TERM 1274 1201037 - 1201064 + F 100 -12 -4.03183 | opp_overlap 1201037, overlap 1201033 AACGAATTTATCTAA CGGCTGGGTGAG GTTT CTCATCTGGCCG TTCTGTTTTATCGCT TERM 1275 1202075 - 1202086 + G 71 -7.2 -4.03413 | overlap 1202068 TGTTATGTACCGCAG GCCC CAGC GGGC TTTATATGGCGGGAT YPTS_1061 1201219 - 1202523 + | ribokinase-like domain-containing protein TERM 1276 1202543 - 1202577 + T 100 -13.6 -5.06816 | opp_overlap 1202545 1202546, overlap 1202546 GTAGACGCGGGATAT AAGTCAGGGCCAGCAT AGT AAGCTGGCCCTGATTG TTTTTATTACAGAGT TERM 1277 1202575 - 1202545 - T 100 -14 -3.49102 | opp_overlap 1202543 1202546, overlap 1202546 AGACGCGGGATATAA GTCAGGGCCAGCAT AGT AAGCTGGCCCTGAT TGTTTTTATTACAGA TERM 1278 1202574 - 1202546 - T 100 -17.5 -2.6914 | opp_overlap 1202543 1202546, overlap 1202545 GACGCGGGATATAAG TCAGGGCCAGCAT AGT AAGCTGGCCCTGA TTGTTTTTATTACAG TERM 1279 1202546 - 1202574 + T 100 -17.5 -4.63592 | opp_overlap 1202546 1202545, overlap 1202543 GACGCGGGATATAAG TCAGGGCCAGCAT AGT AAGCTGGCCCTGA TTGTTTTTATTACAG YPTS_1062 1204311 - 1202620 - | potassium efflux system protein TERM 1280 1203279 - 1203268 - G 83 -7.2 -4.68908 | opp_overlap 1203267 CCCAGCCAAAATAAA GGCG AACT CGCC GATTTGTGCCAAACT YPTS_1063 1205760 - 1204546 - | major facilitator transporter TERM 1281 1204968 - 1204953 - G 71 -2.6 -5.00196 | CCGCAAATAAGAAAA CAAATA GGTG TATCTG GGCACTTTGTACCGA YPTS_1066 1208039 - 1207800 - | hypothetical protein YPTS_1067 1208310 - 1208053 - | hypothetical protein TERM 1282 1208205 - 1208231 + g 71 -10.1 -2.88849 | gap 1, opp_overlap 1208194, overlap 1208200 1208206 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1283 1208206 - 1208232 + g 82 -10.1 -3.82218 | gap 1, opp_overlap 1208194, overlap 1208200 1208205 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1284 1208295 - 1208309 + g 71 -7.2 -4.10437 | overlap 1208283 TTGTCAGCAGTCTGA TGAGTT TTA AACTCA TTCTTTCCTTCATAG YPTS_1068 1208855 - 1208376 - | ybaK/ebsC protein TERM 1285 1209092 - 1209113 + r 100 -10.9 -5.87996 | AAATTCCTCTTTGAC TGGCCGGTA GTGA TATCGGCCA TTTTTTTATTGATTG YPTS_1069 1209928 - 1209119 - | GumN family protein TERM 1286 1210311 - 1210272 - R 100 -17.4 -3.2614 | gap 1, opp_overlap 1210264, overlap 1210273 CATTTTGGATATCAA CGCTCAATGGCGCACAAAA CGA TATTGTGCGCCATTGAG-G TCACTGAAAGCATTT TERM 1287 1210311 - 1210273 - R 100 -17.6 -2.5547 | opp_overlap 1210264, overlap 1210272 ATTTTGGATATCAAC GCTCAATGGCGCACAAAA CGA TATTGTGCGCCATTGAGG TCACTGAAAGCATTT YPTS_1070 1213210 - 1210325 - | copper-translocating P-type ATPase TERM 1288 1211432 - 1211408 - G 79 -10.7 -3.45118 | overlap 1211410 GCAGGCGATAATTAA CACCGTGGTGG CCA CCACCAGGGTA TAGACCAACTGGGGT TERM 1289 1211430 - 1211410 - G 78 -11.1 -3.29593 | overlap 1211408 AGGCGATAATTAACA CCGTGGTGG CCA CCACCAGGG TATAGACCAACTGGG TERM 1290 1212053 - 1212089 + g 71 -4.9 -4.59773 | overlap 1212054 1212055 CCAGGCCGCACCTGT CCCCAGAGCGACCAAGG TAT CCATGGTCGCACTGCCA TTTTTCAGGCTGACC TERM 1291 1212055 - 1212087 + g 75 -11.9 -2.61004 | overlap 1212054 1212053 AGGCCGCACCTGTCC CCAGAGCGACCAAGG TAT CCATGGTCGCACTGC CATTTTTCAGGCTGA TERM 1292 1212704 - 1212719 + g 71 -6.8 -4.15222 | opp_overlap 1212714, overlap 1212705 ATCAGAAACCGTACT TGTGGC TAAA GCCACG TTTGTTGCCGGAACT TERM 1293 1213457 - 1213445 - g 87 -5.5 -5.40474 | ATGTTGCGAAAAAAA CCGGT TTA ACCAG CAAAGCCATTCGTTT TERM 1294 1213504 - 1213489 - g 100 -4.6 -6.13503 | opp_overlap 1213491, overlap 1213491 TATGAAGAAAAAAAA CTGGTG ACGC CACCTG TTCGCACGGATAACG TERM 1295 1213555 - 1213586 + G 100 -13.8 -4.14739 | gap 1, opp_overlap 1213554 1213552 AAACATATTGAAGAG CTCACGTTGCTGCGC CAG GCGCGGCAA-GTGGG TTTTACACTGGATGA YPTS_1071 1213417 - 1213836 + | MerR family transcriptional regulator TERM 1296 1213940 - 1213985 + T 100 -14.9 -3.80114 | opp_overlap 1213947, overlap 1213941 1213977 TTAACGCTGCCGTGA TGAATAACCCGAATCACCTAC CAGA GTAAGTGATTCGGGCTGTTCG TTTACTGCCTTGCTG TERM 1297 1213941 - 1213984 + T 100 -16.2 -2.87586 | opp_overlap 1213947, overlap 1213940 1213977 TAACGCTGCCGTGAT GAATAACCCGAATCACCTAC CAGA GTAAGTGATTCGGGCTGTTC GTTTACTGCCTTGCT TERM 1298 1213978 - 1213947 - T 100 -18.2 -3.71848 | opp_overlap 1213941 1213940 1213977 TGCCGTGATGAATAA CCCGAATCACCTAC CAGA GTAAGTGATTCGGG CTGTTCGTTTACTGC YPTS_1072 1214484 - 1214035 - | hypothetical protein YPTS_1073 1215401 - 1214487 - | band 7 protein TERM 1299 1215545 - 1215523 - R 100 -13.4 -4.52703 | overlap 1215512 GAAAGCAGCATAAAA CTGCGCAGGA TTG CCCCGCGCAG TAGCAAATGATGGTA YPTS_1074 1216465 - 1215596 - | thioredoxin domain-containing protein TERM 1300 1216280 - 1216250 - G 73 -7.7 -4.07647 | gap 2 AGAGCGTAAACCAAA TTGCGACGC-C-ACC ATG GGTTGTGCATCGCAA TCGACACGGGCCAGA YPTS_1075 1217318 - 1216542 - | short-chain dehydrogenase/reductase SDR TERM 1301 1217611 - 1217640 + r 86 -5.7 -5.26316 | gap 1, opp_overlap 1217611, overlap 1217618 1217619 TGATTGGTAAGCGAA GGGATTACCGCACT TTT AGTGCGCTT-TCCC TTTTTTCTAGCCTGA TERM 1302 1217619 - 1217633 + r 73 -10 -3.03344 | opp_overlap 1217611, overlap 1217618 1217611 AAGCGAAGGGATTAC CGCACT TTT AGTGCG CTTTCCCTTTTTTCT YPTS_1076 1218277 - 1217705 - | GDSL family lipase TERM 1303 1218133 - 1218172 + g 76 -2.1 -5.26316 | overlap 1218143 1218159 TATCTCCACTGATAC TGGCATTGAC-CACCTTCG GTAA CGAAGGCGTGGCT-TGCCA TTTTTTATCCAATAG YPTS_1077 1218311 - 1218997 + | ABC transporter related TERM 1304 1219216 - 1219239 + G 73 -10.2 -3.24422 | opp_overlap 1219209, overlap 1219215 1219214 GAAGCGAAGCAGCAG GGGCTGGCGG TTAG CCGCCAACTC TCATTTTTGACCATG TERM 1305 1219561 - 1219544 - g 78 -7.7 -4.38712 | gap 1 CTGATGTTGAGAAAA CCGG-TGC GGT GCAACCGG GTAGCCGTTTGACTT YPTS_1078 1218994 - 1221423 + | hypothetical protein TERM 1306 1221436 - 1221460 + T 86 -9.9 -4.04491 | overlap 1221449 TAGTGGATTTTATTC GCGGGCAGC AGCAGAG GCCGCCCGC TTCTTGTTATAACTT YPTS_1079 1222531 - 1221467 - | phosphoribosylaminoimidazole carboxylase, ATPase subunit YPTS_1080 1223052 - 1222528 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit YPTS_1081 1224090 - 1223368 - | UDP-2,3-diacylglucosamine hydrolase TERM 1307 1224029 - 1224045 + g 73 -10.1 -3.14931 | opp_overlap 1224029 1224022 ATAAAATGCAGAAAA CCGGCAG TGA TTGCCGG TTCCTGAACGCTGAG TERM 1308 1224045 - 1224029 - G 90 -9.4 -4.5538 | opp_overlap 1224029, overlap 1224022 ATAAAATGCAGAAAA CCGGCA GTGAT TGCCGG TTCCTGAACGCTGAG YPTS_1082 1224595 - 1224101 - | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 1309 1225744 - 1225758 + G 73 -7.8 -4.03413 | TCTGAAGCAGGCACG CGCTTC ACT GGAGCG TTTATATACCGCGCT TERM 1310 1225779 - 1225767 - g 71 -10.5 -2.87931 | TGGAGCGTTTATATA CCGCG CTG CGCGG TACTGATGCTAACGC YPTS_1083 1224806 - 1226191 + | cysteinyl-tRNA synthetase TERM 1311 1226387 - 1226357 - T 100 -9.1 -5.56568 | gap 1, opp_overlap 1226357 1226359, overlap 1226359 ATAGTACTAAAAAAA TTGCGGTT-CTGGT GTTT ACCAGTAACCGCGA TTTTTTTGTTCAATA TERM 1312 1226357 - 1226387 + T 100 -11.3 -5.8187 | gap 1, opp_overlap 1226357 1226359, overlap 1226359 ATAGTACTAAAAAAA TTGCGGTT-CTGGT GTTT ACCAGTAACCGCGA TTTTTTTGTTCAATA TERM 1313 1226359 - 1226385 + T 83 -11.7 -3.0287 | gap 1, opp_overlap 1226357 1226359, overlap 1226357 AGTACTAAAAAAATT GCGGTT-CTGGT GTTT ACCAGTAACCGC GATTTTTTTGTTCAA TERM 1314 1226385 - 1226359 - T 83 -11.7 -2.94304 | gap 1, opp_overlap 1226359 1226357, overlap 1226357 AGTACTAAAAAAATT GCGGTT-CTGGT GTTT ACCAGTAACCGC GATTTTTTTGTTCAA TERM 1315 1226404 - 1226418 + T 83 -11.4 -3.02263 | opp_overlap 1226403 TTTTTTGTTCAATAG GCCAGC AAT GCTGGC TATTACAACGGCTAT YPTS_1084 1226645 - 1226433 - | hypothetical protein YPTS_1085 1227526 - 1226660 - | tetrahydrofolate dehydrogenase/cyclohydrolase TERM 1316 1227876 - 1227846 - R 79 -8.3 -4.09864 | opp_overlap 1227853, overlap 1227853 AGTTACCGCTTAAAA TACAAAACCCGCC ATTTA GACGGGTCATGTA ACGGGTCAGGTAGTG TERM 1317 1227869 - 1227853 - R 85 -7.2 -4.89567 | opp_overlap 1227853, overlap 1227846 GCTTAAAATACAAAA CCCGCC ATTTA GACGGG TCATGTAACGGGTCA YPTS_1087 1228535 - 1228335 - | hypothetical protein YPTS_1088 1229296 - 1228649 - | hypothetical protein TERM 1318 1229218 - 1229259 + g 100 -16.1 -2.91702 | opp_overlap 1229223, overlap 1229223 ATTCAGGGAGCCATA AAAAATGGCCGGAAGCTAA ATCA TTAACTTCCGGCCATTTTA ATATTTTATCGTGTT TERM 1319 1229223 - 1229254 + g 100 -16 -4.58236 | opp_overlap 1229223, overlap 1229218 GGGAGCCATAAAAAA TGGCCGGAAGCTAA ATCA TTAACTTCCGGCCA TTTTAATATTTTATC TERM 1320 1229254 - 1229223 - G 100 -18.2 -5.28176 | opp_overlap 1229218 1229223 GGGAGCCATAAAAAA TGGCCGGAAGCTAA ATCA TTAACTTCCGGCCA TTTTAATATTTTATC YPTS_1089 1229523 - 1229281 - | hypothetical protein YPTS_1090 1230153 - 1230398 + | hypothetical protein YPTS_1091 1230395 - 1230571 + | hypothetical protein YPTS_1092 1230798 - 1231400 + | CDP-alcohol phosphatidyltransferase YPTS_1093 1231393 - 1232322 + | phosphatidate cytidylyltransferase YPTS_1094 1232332 - 1232964 + | phospholipid/glycerol acyltransferase TERM 1321 1233005 - 1233023 + G 76 -9.6 -3.64716 | opp_overlap 1232995, overlap 1233003 1233008 AGGCATGTTCACCGC CAGCGATG AAA CATCGTTG TATTTTCGCCACTGG TERM 1322 1233008 - 1233020 + G 70 -7.7 -3.95435 | opp_overlap 1232995, overlap 1233005 1233003 CATGTTCACCGCCAG CGATG AAA CATCG TTGTATTTTCGCCAC YPTS_1095 1232961 - 1234724 + | alpha/beta hydrolase fold protein YPTS_1096 1234717 - 1236036 + | putative dual specificity phosphatase TERM 1323 1236092 - 1236112 + G 80 -7.5 -4.58236 | TTTCGCCTTATTAAC GCTACCACC GCT GGTGCTGGC TTTTAATCTTTTGTA YPTS_1097 1236018 - 1236419 + | hypothetical protein YPTS_1098 1236516 - 1236821 + | hypothetical protein TERM 1324 1237003 - 1237020 + F 82 -7.7 -4.57569 | gap 1, opp_overlap 1237002 1237003, overlap 1237004 1237013 GCTGAAATCGAATAC CGGG-AGC AGG GCTTCCCG TTTTTGGGGGGCTAA YPTS_1099 1237124 - 1238017 + | LysR family transcriptional regulator TERM 1325 1238043 - 1238018 - T 100 -13.4 -3.15544 | opp_overlap 1238013 1238012 CGTTATTCGGATTAA CTGGCTTACG GATTAT CGTAAGCCAG ATGAAATTTGAGCGA YPTS_1100 1239061 - 1238072 - | aldo/keto reductase TERM 1326 1238226 - 1238248 + g 78 -6.2 -4.82901 | opp_overlap 1238247 TGCAGTTTTGTGGTT CCGGGGATTG GCA CAATCCAAGG TTTTTGTGCCAACAA YPTS_1101 1239938 - 1239087 - | aldo/keto reductase YPTS_1102 1240129 - 1240254 + | hypothetical protein YPTS_1103 1240251 - 1240394 + | hypothetical protein YPTS_1104 1240411 - 1242039 + | hypothetical protein YPTS_1105 1244499 - 1242118 - | glycoside hydrolase family 3 protein TERM 1327 1244623 - 1244636 + r 82 -2.3 -5.72254 | overlap 1244614 TAACGGGTCGGCATG GGGCC AGAC GGTTC TTTTTTATTGTTTAA YPTS_1106 1245185 - 1244655 - | hypothetical protein TERM 1328 1244941 - 1244963 + g 89 -6.2 -5.34365 | opp_overlap 1244941 1244942, overlap 1244935 1244942 TTGGACTCAGGACAA GGCAGTGAAG GCT CTTCTCTGCA TTTTTCTTGTTCTGC TERM 1329 1244942 - 1244962 + g 76 -9.7 -3.78992 | opp_overlap 1244941 1244942, overlap 1244941 1244935 TGGACTCAGGACAAG GCAGTGAAG GCT CTTCTCTGC ATTTTTCTTGTTCTG YPTS_1107 1247385 - 1245178 - | hypothetical protein TERM 1330 1246811 - 1246800 - G 80 -3 -5.36441 | TGTTGAGATAAAAAA TGTT GTCG AACA GTGAGAAAGAGACCG TERM 1331 1247241 - 1247228 - G 71 -4.5 -4.57482 | overlap 1247224 CTACTGAGAAACAAA CGCCA AGCC TGACG TCCGGGCCGGACACC TERM 1332 1247424 - 1247470 + H 77 -10.8 -2.74926 | opp_overlap 1247426 1247427 1247462, overlap 1247421 1247419 GCGAAAGGGATATCA AATGCCGTCTTGTTGCCGATAG GCT CTGACGGCGACAAGATGGCGAG TCATCTCTGGTTTCT TERM 1333 1247468 - 1247426 - H 78 -9 -3.87354 | opp_overlap 1247424 1247421 1247419, overlap 1247427 1247462 GAAAGGGATATCAAA TGCCGTCTTGTTGCCGATAG GCT CTGACGGCGACAAGATGGCG AGTCATCTCTGGTTT TERM 1334 1247467 - 1247427 - H 93 -12.5 -2.91689 | opp_overlap 1247424 1247421 1247419, overlap 1247426 1247462 AAAGGGATATCAAAT GCCGTCTTGTTGCCGATAG GCT CTGACGGCGACAAGATGGC GAGTCATCTCTGGTT YPTS_1108 1247618 - 1247740 + | hypothetical protein TERM 1335 1247849 - 1247865 + G 73 -2.3 -5.07486 | CGATGGCGATCGCTA CATTG AACAGGG CAATG TTTTTATTAACGGTA TERM 1336 1248581 - 1248567 - g 80 -4.2 -5.252 | overlap 1248578 CAGGGGCAGAAAAAA GCCGAA AAA TCCGAC GACAACACCGCTTCC YPTS_1109 1247769 - 1248641 + | pseudouridine synthase YPTS_1110 1248852 - 1249973 + | cupin 4 family protein TERM 1337 1250822 - 1250834 + T 95 -3.4 -6.28631 | TTGTGGAAATTATCT TGCT GACTG AGCA TTTTTTTTTAATTTA TERM 1338 1250896 - 1250875 - T 91 -6.5 -5.56264 | opp_overlap 1250880, overlap 1250878 GTGAAATAGAAAAAA TAACCCCTC AGAA GAGGGGCTG AGGTTATTGACAAAG TERM 1339 1250893 - 1250878 - T 100 -10.4 -4.8277 | opp_overlap 1250880, overlap 1250875 AAATAGAAAAAATAA CCCCTC AGAA GAGGGG CTGAGGTTATTGACA TERM 1340 1250972 - 1250998 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1250961, overlap 1250967 1250973 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1341 1250973 - 1250999 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1250961, overlap 1250967 1250972 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPTS_1113 1253004 - 1251088 - | outer membrane autotransporter TERM 1342 1252452 - 1252475 + g 83 -11.8 -3.53012 | gap 1, opp_overlap 1252434 1252451 1252469 GAAGCGGCACGATAC TCGTGCCCTTC CAG GAAGGGC-CGA TTTCGACCAGACCCG TERM 1343 1253087 - 1253065 - H 78 -9.8 -3.54926 | opp_overlap 1253069, overlap 1253063 CATTGTAAAAAGAGA CACACCGCCC TTG GGACGGTTTG AACGTTATGTTTATC YPTS_1114 1253813 - 1254052 + | hypothetical protein YPTS_1115 1254091 - 1254342 + | hypothetical protein YPTS_1116 1254366 - 1254845 + | Hcp1 family type VI secretion system effector TERM 1344 1254850 - 1254885 + T 72 -7.9 -3.76767 | gap 2, opp_overlap 1254859, overlap 1254848 1254853 GGGTTTACTAGTTTC TGATATCAAGCACACTT TTTC AAGTGTGCTTGA-A-CA TATTTATATTCTTCA TERM 1345 1254878 - 1254859 - T 81 -10.8 -3.25942 | opp_overlap 1254853 1254850 1254848 AGTTTCTGATATCAA GCACACTT TTTC AAGTGTGC TTGAACATATTTATA YPTS_1117 1255351 - 1254950 - | hypothetical protein YPTS_1118 1256023 - 1255583 - | hypothetical protein TERM 1346 1255843 - 1255821 - GR 71 -4.8 -4.58859 | AAATAGAACAATAAA GGGACTGCAA ATA TTACAAACCC AACCTTCCATGAAAA YPTS_1119 1256834 - 1255977 - | hypothetical protein TERM 1347 1256596 - 1256582 - GR 100 -5.7 -5.76949 | GACTGCCAAAAAAAA CCGAT GTGGG ATCGG TACAGGAAAAAATAG TERM 1348 1257045 - 1257033 - R 78 -4.1 -5.24551 | overlap 1257023 TTAAATGAAGAAAAA CTTCA TTA CGAAG AAGATGACCAGAGCT TERM 1349 1257058 - 1257082 + r 73 -5.7 -4.44355 | opp_overlap 1257058, overlap 1257060 AAGAAGATGACCAGA GCTGAATGGGT ATG AGCCATTCAAC TTATTTTTAGAATTA YPTS_1120 1257402 - 1257292 - | hypothetical protein YPTS_1121 1257507 - 1257752 + | putative transcriptional regulator, Nlp TERM 1350 1257793 - 1257819 + T 95 -8.1 -5.16237 | gap 2, overlap 1257815 AAACGCGAGATTGCT GCCCCACAATGGT GTG ACC-T-GTGGGGC TTTTTTGATCCCCTT YPTS_1122 1260328 - 1257965 - | penicillin-binding protein 1C TERM 1351 1258640 - 1258619 - G 73 -7.2 -4.15114 | AATATTAAAGAATAA CGGTGCGG CGGCAT CGGCACCG ACAAAGGCGCTGTTG TERM 1352 1259742 - 1259763 + g 85 -2.9 -5.61596 | overlap 1259743 1259743 1259746 GCCAATGTCAGGGCT TCTGGCAGC GTCA GTTGCTGGG TTTTTTTATCAAAAT TERM 1353 1260347 - 1260377 + r 83 -9 -4.23434 | gap 1, overlap 1260351 1260352 GTTACGGCTGAAATC CGATAGCGCCCCG GCGATG CGGGGCGC-GTTG TTTTCAGCTATTTTG TERM 1354 1260351 - 1260374 + r 93 -10.9 -4.2142 | overlap 1260347 1260352 CGGCTGAAATCCGAT AGCGCCCCG GCGATG CGGGGCGCG TTGTTTTCAGCTATT TERM 1355 1260352 - 1260373 + r 100 -14.4 -3.11767 | overlap 1260351 1260347 GGCTGAAATCCGATA GCGCCCCG GCGATG CGGGGCGC GTTGTTTTCAGCTAT YPTS_1123 1266363 - 1260385 - | alpha-2-macroglobulin domain-containing protein TERM 1356 1263608 - 1263624 + g 85 -12.3 -3.37056 | opp_overlap 1263607 GATTTCAGATCCAAT GGGATGG TCG CCATCCC TTGTAGATCGGTCGT TERM 1357 1264288 - 1264305 + g 73 -5.5 -4.56597 | opp_overlap 1264291, overlap 1264287 GGCTCGGGTGGGCAG GAAGGAG ACAT CCCCTTC TTTTTCCACCAGGAA TERM 1358 1265124 - 1265142 + g 81 -11 -3.61894 | CGGCCTCATTGAGGG TCAGCGCC AGC GGCGTTGA TTGTTGCAGCAGATT YPTS_1124 1266500 - 1266670 + | hypothetical protein TERM 1359 1266717 - 1266739 + T 77 -10.6 -3.14344 | GCTATGGCAGAGTCA TGCCCTGAGA GCG TTTCAGGGCG TTGGTACAGCAGATG YPTS_1125 1267818 - 1266964 - | RpiR family transcriptional regulator YPTS_1126 1268160 - 1269686 + | methylmalonate-semialdehyde dehydrogenase TERM 1360 1270542 - 1270560 + G 72 -11 -2.5655 | overlap 1270541 GCTGCCAAGTGATCA TCCCCTCA ACT TGGGGGGA ATTGGTGTCACTGGC TERM 1361 1270798 - 1270822 + G 81 -12.9 -2.70932 | overlap 1270800 GAAGGGCTGGCAGGT TATCGCACTGC TTG GCAGGGCGATA TCATTGAGGCCAAAG TERM 1362 1270800 - 1270820 + G 74 -11.1 -2.90075 | overlap 1270798 AGGGCTGGCAGGTTA TCGCACTGC TTG GCAGGGCGA TATCATTGAGGCCAA YPTS_1127 1269700 - 1271646 + | thiamine pyrophosphate binding domain-containing protein YPTS_1128 1271630 - 1271779 + | hypothetical protein YPTS_1129 1271940 - 1272926 + | oxidoreductase domain-containing protein TERM 1363 1273275 - 1273290 + G 73 -3.2 -4.84311 | gap 1, opp_overlap 1273268, overlap 1273275 TGGAAAATGCCATCA CCC-GTG GCG CGCAGGG TTTTATTGTCTCGCC YPTS_1130 1273052 - 1273981 + | periplasmic binding protein/LacI transcriptional regulator YPTS_1131 1274030 - 1275577 + | ABC transporter related TERM 1364 1275668 - 1275679 + G 73 -2.2 -5.1244 | overlap 1275661 CTTTTTTTGAACGCT TCGG CGTC CTGA TTTTTATGTTCCTGC YPTS_1132 1275589 - 1276617 + | inner-membrane translocator YPTS_1133 1276641 - 1277774 + | oxidoreductase domain-containing protein TERM 1365 1278183 - 1278170 - g 75 -3.7 -5.05601 | GACCACAGATAAAAA GCGGC TCAC GGCGC TGGTACTCCTGAGTA YPTS_1134 1277823 - 1279811 + | ribokinase-like domain-containing protein TERM 1366 1280732 - 1280721 - g 72 -5.8 -4.31329 | TCAAAAACCGTAAAA CCAG TTTT CTGG ACGCGGTGTTGAGTG YPTS_1135 1279832 - 1280938 + | xylose isomerase domain-containing protein TERM 1367 1281078 - 1281102 + G 70 -9.9 -3.1944 | opp_overlap 1281061, overlap 1281071 AAGGGCAGCCACTGA CGCTCACCGCG GTT CCCGATGAGCG TTGCCTGGTTTTGAT YPTS_1136 1280948 - 1281763 + | myo-inositol catabolism IolB domain-containing protein TERM 1368 1281752 - 1281783 + F 86 -9 -4.27694 | opp_overlap 1281751 1281745, overlap 1281735 1281733 1281749 ATAAATCATAATTAT CCTATTACATAA ATTGTTTA TTATGTAATAGG TTGTTTATTAATTAG TERM 1369 1281836 - 1281847 + F 75 -3 -5.24551 | opp_overlap 1281836 TTTATTGTGAATAAC CAAA TCGC TTTG TTTTTATTCGTTTGA YPTS_1137 1281922 - 1282125 + | hypothetical protein TERM 1370 1282685 - 1282707 + G 72 -10.6 -2.94695 | overlap 1282687 1282689 GTTTGCGGTTTCACC TAGAGCGCCA GAC TGGCGGTCTA TCATTATCTATTGAG YPTS_1138 1282333 - 1284123 + | ABC transporter related YPTS_1139 1284426 - 1284139 - | antibiotic biosynthesis monooxygenase YPTS_1140 1284869 - 1285063 + | hypothetical protein YPTS_1141 1286407 - 1285442 - | hypothetical protein TERM 1371 1286939 - 1286915 - g 90 -2.9 -5.78622 | overlap 1286917 CTATCGTAAAAAAAA TCTTCACATCC TTA GGATTTAAAAA AGAGATTAAATTCTA TERM 1372 1287039 - 1287060 + G 85 -5.7 -5.05505 | opp_overlap 1287029 1287039, overlap 1287044 CAAACGTCTGGATAA GACCCCCGC AGAA GCGGATGTC TTTTTGATTTGTGAT YPTS_1142 1286857 - 1287447 + | LuxR family transcriptional regulator YPTS_1143 1288216 - 1287737 - | cold-shock DNA-binding domain-containing protein YPTS_1144 1288495 - 1288704 + | cold-shock DNA-binding domain-containing protein TERM 1373 1288725 - 1288742 + T 100 -10.5 -5.28176 | opp_overlap 1288725 CCATATCTTTAAAAA CCCGCCT TACT GGGCGGG TTTTTTATGGGTAGC TERM 1374 1288742 - 1288725 - T 100 -9.8 -4.61231 | opp_overlap 1288725 CCATATCTTTAAAAA CCCGCC TTACTG GGCGGG TTTTTTATGGGTAGC YPTS_1145 1289510 - 1289127 - | CrcB protein YPTS_1146 1289870 - 1290022 + | hypothetical protein YPTS_1147 1290077 - 1290334 + | twin arginine-targeting protein translocase TERM 1375 1290423 - 1290443 + T 100 -9.7 -5.1675 | opp_overlap 1290423 GGCTGATAAAAAAAA CGGATCTCC AAT GGAAATCCG TTTTTTGGTGGCTGC TERM 1376 1290443 - 1290423 - T 100 -11.9 -5.93809 | opp_overlap 1290423 GGCTGATAAAAAAAA CGGATCTCC AAT GGAAATCCG TTTTTTGGTGGCTGC TERM 1377 1290481 - 1290499 + T 74 -9.6 -3.38046 | opp_overlap 1290481, overlap 1290479 1290482 1290486 AGGTGTAATAAGTTA TTTCAGCC ATG GGCTGAAG TCTTTAGCCTACCGC TERM 1378 1290482 - 1290498 + T 76 -10.9 -2.62613 | opp_overlap 1290481, overlap 1290481 1290479 1290486 GGTGTAATAAGTTAT TTCAGCC ATG GGCTGAA GTCTTTAGCCTACCG YPTS_1148 1291480 - 1290515 - | lipoic acid synthetase TERM 1379 1291507 - 1291519 + r 80 -6.3 -4.90013 | TTCCAGTTCTGAATC TCTCA ACT TGAGA TTTTTCATTAAATTC YPTS_1149 1292374 - 1291673 - | lipoate-protein ligase B TERM 1380 1292520 - 1292491 - R 86 -7.9 -4.62085 | gap 2, opp_overlap 1292490, overlap 1292488 ACCCCGAAAAAATAA GGCCCGGCACCTG AATAAA CAGG-GC-GGGCC GTCATTAGCGCGTTG YPTS_1150 1292849 - 1292586 - | hypothetical protein TERM 1381 1292943 - 1292914 - R 72 -6.3 -4.3739 | opp_overlap 1292915, overlap 1292920 TATCCGGCTATAAAA TCACAACTCCCGC CGGA GCGGGAGTGACGT ACTGTTCGCCAGATA TERM 1382 1292937 - 1292920 - R 100 -12.7 -3.72405 | opp_overlap 1292915, overlap 1292914 GCTATAAAATCACAA CTCCCGC CGGA GCGGGAG TGACGTACTGTTCGC YPTS_1151 1294249 - 1293047 - | peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 TERM 1383 1294571 - 1294608 + r 100 -14.3 -5.14163 | opp_overlap 1294565 1294568 1294582 TCACCTAAACAGTTT TAACCGTAACACCCTGT TTGC ACAGGCGGTTACGGTTA TTTTTATTAGTCAGT YPTS_1152 1295734 - 1294652 - | rare lipoprotein A YPTS_1153 1296856 - 1295744 - | rod shape-determining protein RodA TERM 1384 1296356 - 1296346 - G 71 -8.2 -3.76767 | overlap 1296344 1296347 GGAACAACACAAACA GGCC GGA GGCC GCAACCAGAATTGAT YPTS_1154 1298937 - 1297042 - | penicillin-binding protein 2 TERM 1385 1297239 - 1297216 - G 74 -8.9 -3.78022 | CTCATAGGGAGCAAA CGCAACCAT TAACTT ATGGTCGCG CAGGTGTTCTGCCAC TERM 1386 1297586 - 1297612 + g 70 -2.2 -4.86033 | overlap 1297588 1297598 TGGCCAATACCTACC GGAATGGTATCA CCC TGATACCAAGGC TTTTTATGGCGCTTT TERM 1387 1298558 - 1298571 + g 81 -8.1 -4.62471 | GAGGTAAAGCGACGT GAGCG TTTG CGCTC TTTTTCAAAGTTAGC YPTS_1155 1299489 - 1299019 - | hypothetical protein YPTS_1156 1299810 - 1299493 - | iojap-like protein YPTS_1157 1300695 - 1300033 - | nicotinate (nicotinamide) nucleotide adenylyltransferase YPTS_1158 1301719 - 1300685 - | DNA polymerase III, delta subunit TERM 1388 1301691 - 1301664 - G 78 -9 -3.98649 | opp_overlap 1301661, overlap 1301665 CACAATAGATAACAA GCGCGTAGCCCC TCAT GGAGCTGCGCGA CAAGTTGTTCAGGGT TERM 1389 1301690 - 1301665 - G 81 -12.5 -2.98105 | opp_overlap 1301661, overlap 1301664 ACAATAGATAACAAG CGCGTAGCCCC TCAT GGAGCTGCGCG ACAAGTTGTTCAGGG YPTS_1159 1302339 - 1301716 - | rare lipoprotein B TERM 1390 1302312 - 1302278 - G 74 -6.3 -4.34402 | CCCCGCAGATTAAAA CCGCAGCCAGCGGTG ACCAG CACCGCCAACCCCAG CAACAACGTCAGAAT YPTS_1160 1304936 - 1302354 - | leucyl-tRNA synthetase TERM 1391 1303011 - 1303028 + g 73 -3.4 -4.85599 | opp_overlap 1303010 CATCATAAACAGACG TACGGT ATCCGC GCCGTA TTTTTCTACCATGAC YPTS_1161 1305198 - 1305680 + | hypothetical protein TERM 1392 1305809 - 1305778 - T 87 -5 -5.49579 | overlap 1305779 1305782 TCATAAAAAATAAAA GTGACCTCCCCTAC AAAC GCAGGGGAGGAGAA CGAATTAATGCAAGA TERM 1393 1305808 - 1305779 - T 75 -8.5 -3.87307 | overlap 1305778 1305782 CATAAAAAATAAAAG TGACCTCCCCTAC AAAC GCAGGGGAGGAGA ACGAATTAATGCAAG TERM 1394 1305805 - 1305782 - T 100 -14.6 -2.95933 | overlap 1305779 1305778 AAAAAATAAAAGTGA CCTCCCCTAC AAAC GCAGGGGAGG AGAACGAATTAATGC YPTS_1162 1306539 - 1305814 - | ABC transporter related YPTS_1163 1307213 - 1306539 - | polar amino acid ABC transporter, inner membrane subunit YPTS_1164 1307953 - 1307213 - | polar amino acid ABC transporter, inner membrane subunit TERM 1395 1308062 - 1308036 - R 100 -15.2 -5.60993 | opp_overlap 1308036 1308033 GGGTTGACAAAAAAA TGCGGGGTGG GGAACGA CCACCCCGCA TCCTGTCTACCAATA TERM 1396 1308036 - 1308062 + r 100 -15.2 -2.69468 | opp_overlap 1308036, overlap 1308033 GGGTTGACAAAAAAA TGCGGGGTGG GGAACGA CCACCCCGCA TCCTGTCTACCAATA TERM 1397 1308096 - 1308114 + r 77 -10.2 -3.07102 | overlap 1308093 CATCATCAATCGGTA GGGCAGGT ATG ACCCGCCC TGATTATTATTGTTA YPTS_1165 1309044 - 1308127 - | extracellular solute-binding protein TERM 1398 1308588 - 1308610 + g 91 -11.4 -4.2131 | opp_overlap 1308588 1308587, overlap 1308601 CTTTACCTGCCAAAT CTTTGAAGTC TTT GACTTCAGAG TCTTTTTTGGTGAGT TERM 1399 1308601 - 1308612 + g 77 -4.4 -5.1675 | opp_overlap 1308588 1308587, overlap 1308588 ATCTTTGAAGTCTTT GACT TCAG AGTC TTTTTTGGTGAGTAA TERM 1400 1308906 - 1308922 + g 75 -5.1 -4.7416 | opp_overlap 1308909 ATTCACGGTGGCCCA CAACGAT AAC ACCGTTG TTTTTAACCTTTTGC TERM 1401 1309536 - 1309516 - R 79 -11.2 -3.11178 | GAACTAAGCGGAATA TAGCCCTG GAGTG CAGGGCTA TCAGGTACAAATAGA TERM 1402 1309590 - 1309578 - R 74 -4.1 -4.97666 | AACAGATGAGAAAAA CAGAC GTT ATCTG TGACTGGAAGCACTA YPTS_1166 1311340 - 1309793 - | apolipoprotein N-acyltransferase TERM 1403 1311305 - 1311287 - G 85 -5.9 -5.17353 | overlap 1311289 1311290 ACAGGCACCAAAAAA TAGCGCC AGTAG GGCGCGA ACCCACTGGCGTTGG TERM 1404 1311303 - 1311289 - G 77 -8.5 -4.2131 | overlap 1311287 1311290 AGGCACCAAAAAATA GCGCC AGTAG GGCGC GAACCCACTGGCGTT TERM 1405 1311316 - 1311290 - G 79 -11.6 -3.11701 | overlap 1311289 1311287 GGCACCAAAAAATAG CGCCAGTAGG GCGCGAA CCCACTGGCG TTGGAGGAATAGAGC YPTS_1167 1312226 - 1311348 - | transporter-associated region TERM 1406 1312076 - 1312086 + g 73 -5.4 -4.64676 | overlap 1312073 CTCGGGTATCGGGAT CGAT CAG ATCG TTTTGTTCAGAATCA YPTS_1168 1312817 - 1312344 - | hypothetical protein YPTS_1169 1313887 - 1312814 - | PhoH family protein TERM 1407 1314140 - 1314117 - R 86 -6.7 -5.07652 | opp_overlap 1314119, overlap 1314119 CCCGCTAAAATAAAA CAGGCACTG ACAATG CAGTGCCTC GTTACGCGGGCGGGA TERM 1408 1314138 - 1314119 - R 85 -9.3 -4.16397 | opp_overlap 1314119, overlap 1314117 CGCTAAAATAAAACA GGCACTG ACAATG CAGTGCC TCGTTACGCGGGCGG YPTS_1170 1315743 - 1314214 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 1409 1315850 - 1315835 - H 70 -5.4 -4.52589 | opp_overlap 1315823, overlap 1315836 TGCGGTTAGACAAAA CCTTGC TAAT GCAAGA AGTACATTCACTTTT YPTS_1171 1315880 - 1317061 + | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase TERM 1410 1317238 - 1317262 + T 100 -16.5 -2.73364 | overlap 1317236 TACTGCCTTTCTGCC TGAGCCCGGTA TTC TGCCGGGCTCA TCATTCCGCTGACGG TERM 1411 1317462 - 1317447 - T 100 -8.2 -5.1971 | opp_overlap 1317447 1317442 ATGAAAAAGCAAAAA GCCCGC CGAA GCGAGC TTTTCTAAATTTGGC TERM 1412 1317447 - 1317462 + T 73 -6 -4.51196 | opp_overlap 1317447, overlap 1317442 ATGAAAAAGCAAAAA GCCCGC CGAA GCGAGC TTTTCTAAATTTGGC TERM 1413 1317674 - 1317712 + T 79 -11.7 -2.53911 | opp_overlap 1317677 TGTATGGCTGGGATA CCAGGATTCGAACCTGG GAATG CCAGGATCAAAACCTGG TGCCTTACCGCTTGG TERM 1414 1317832 - 1317870 + T 79 -11.7 -2.53911 | opp_overlap 1317822 1317835 AAGATGGCTGGGATA CCAGGATTCGAACCTGG GAATG CCAGGATCAAAACCTGG TGCCTTACCGCTTGG TERM 1415 1318343 - 1318367 + T 79 -11.4 -2.50385 | opp_overlap 1318343, overlap 1318342 1318338 1318346 GGTGACGTAAAAAAA CAAGGCCGCC CCAGA GGCGACCTTG CTATCTATTCTCTAT TERM 1416 1318367 - 1318343 - T 100 -14.3 -5.47218 | opp_overlap 1318343 1318342 1318338 1318346 GGTGACGTAAAAAAA CAAGGCCGCCC CAG AGGCGACCTTG CTATCTATTCTCTAT TERM 1417 1318520 - 1318537 + T 78 -9.8 -3.53189 | TTGTCAGCAGTCGGC GCGGGG GATTAA CCCCGC TTATCGTGTTCAATT YPTS_1173 1320215 - 1318551 - | asparagine synthase (glutamine-hydrolyzing) YPTS_1174 1321322 - 1320570 - | HAD family hydrolase TERM 1418 1321379 - 1321364 - R 73 -9 -3.42346 | opp_overlap 1321361 AATAGGTCACTATAA CATGGC TGTG GCCATG ACAGTTTCTTTCAAC YPTS_1175 1322621 - 1321395 - | ROK family protein YPTS_1176 1323783 - 1322638 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1419 1323411 - 1323421 + g 79 -2.4 -5.42862 | GGTGCAAGCCGAGCG CCTG ATG CTGG TTTTTTTGCAGATAT YPTS_1177 1324603 - 1323803 - | glucosamine-6-phosphate isomerase TERM 1420 1324919 - 1324929 + H 74 -6.8 -4.37886 | GTGTTTATATAATGT GTGC CAT GCAC TTTTCTAAAAGGTAG YPTS_1178 1325002 - 1327035 + | PTS system, N-acetylglucosamine-specific IIBC subunit TERM 1421 1327149 - 1327126 - f 100 -15.4 -3.4052 | opp_overlap 1327126 TTTTAATCGAACCAA CGGGAAGAGA GCGA TCTCTTCCCG TTTTTTTGTTTTGTT TERM 1422 1327126 - 1327149 + F 100 -15.4 -6.17669 | opp_overlap 1327126 TTTTAATCGAACCAA CGGGAAGAGA GCGA TCTCTTCCCG TTTTTTTGTTTTGTT YPTS_1179 1327250 - 1328917 + | glutaminyl-tRNA synthetase TERM 1423 1328940 - 1328959 + F 100 -10.7 -5.4251 | opp_overlap 1328938 CGCTCAGATTCAATT GGCGTGG CACAGT CCACGCC TTTTTTGTCTCTGAC TERM 1424 1329999 - 1329981 - g 71 -7.4 -4.11623 | CAGCACCAAATGAAA TTGGCTTC AGT GACGCCAA AACCCGCTGGGACGA YPTS_1180 1329623 - 1331044 + | outer membrane porin TERM 1425 1333558 - 1333588 + G 72 -10.4 -3.05844 | overlap 1333556 GAAGAGTGATAAACC CTGGCCGGGTGTAC AGG GTATCTCCGGTCAG TCTTGGAATGAAACG YPTS_1181 1331372 - 1334047 + | glycoside hydrolase family protein TERM 1426 1334158 - 1334176 + T 100 -11.7 -5.40072 | TGAGTTGATCGTATT TCCCCGG CTGGT CCGGGGA TTTTTTTGCCCGAAA YPTS_1182 1334934 - 1334488 - | ferric uptake regulator family protein TERM 1427 1335250 - 1335286 + r 100 -12.4 -3.61517 | opp_overlap 1335250 1335254, overlap 1335254 CCAGTGACTGGAACA GAAACGCTCTGCTGTG AATAC TATCGCAGAGCGTTTC TTGTTGCGGGGAGAT TERM 1428 1335286 - 1335250 - R 71 -9.6 -3.06492 | opp_overlap 1335250 1335254, overlap 1335254 CCAGTGACTGGAACA GAAACGCTCTGC TGTGAATACTATC GCAGAGCGTTTC TTGTTGCGGGGAGAT TERM 1429 1335254 - 1335282 + r 78 -7.4 -4.44667 | opp_overlap 1335254 1335250, overlap 1335250 TGACTGGAACAGAAA CGCTCTGCTGTG AATAC TATCGCAGAGCG TTTCTTGTTGCGGGG YPTS_1183 1335828 - 1335301 - | flavodoxin TERM 1430 1336253 - 1336210 - R 73 -6 -4.41206 | opp_overlap 1336217 1336248, overlap 1336217 AATGACGGCATAAAA GTAATAACAGCGTGGCGTAA TCAC TTACACCACGCTGTTGTGGT AACCGACAGGGTTAG TERM 1431 1336246 - 1336217 - R 100 -17.3 -3.9978 | opp_overlap 1336217, overlap 1336210 GCATAAAAGTAATAA CAGCGTGGCGTAA TCAC TTACACCACGCTG TTGTGGTAACCGACA TERM 1432 1336217 - 1336246 + r 100 -15.1 -3.40403 | opp_overlap 1336217 1336210 GCATAAAAGTAATAA CAGCGTGGCGTAA TCAC TTACACCACGCTG TTGTGGTAACCGACA YPTS_1184 1336552 - 1336265 - | CopG/DNA-binding domain-containing protein YPTS_1185 1336740 - 1336564 - | hypothetical protein YPTS_1186 1336834 - 1336727 - | hypothetical protein YPTS_1187 1337651 - 1336884 - | alpha/beta hydrolase fold protein TERM 1433 1337916 - 1337904 - R 87 -4.9 -5.4492 | opp_overlap 1337904 1337902, overlap 1337914 GATAGATATAAAAAA TGATT AAT AATCA TCTTGTTGATGAAGA YPTS_1188 1338095 - 1337967 - | hypothetical protein YPTS_1189 1338362 - 1338613 + | hypothetical protein TERM 1434 1338633 - 1338646 + T 78 -9.5 -3.737 | opp_overlap 1338631 1338628 TCTTGATTAACTATT GGGGC GAAC GCCCC TTTCGTAGAAGGTTG YPTS_1190 1338961 - 1338776 - | integrase YPTS_1191 1339307 - 1339044 - | transposase IS3/IS911 family protein YPTS_1192 1339886 - 1339356 - | phage integrase family protein TERM 1435 1340034 - 1340008 - R 100 -9.3 -5.4492 | opp_overlap 1340008 TACAGACACAAAAAA GCCCGCAAACC TAGGT GGGATGCGGGC TTTTCGTACTTCACC TERM 1436 1340008 - 1340034 + r 88 -9.3 -4.3534 | opp_overlap 1340008 TACAGACACAAAAAA GCCCGCAAACC TAGGT GGGATGCGGGC TTTTCGTACTTCACC YPTS_1193 1341064 - 1340231 - | hypothetical protein TERM 1437 1341119 - 1341083 - R 100 -16 -4.44915 | gap 1, opp_overlap 1341088 TAATCATCCATAAAA GCA-AATGCGCCAGCCA ACAG TGGCAGGCGCATTATGC GATCAATATAAAAAG TERM 1438 1341088 - 1341113 + r 100 -14.7 -3.33671 | opp_overlap 1341083 ATCCATAAAAGCAAA TGCGCCAGCCA ACAG TGGCAGGCGCA TTATGCGATCAATAT YPTS_1194 1341498 - 1341178 - | hypothetical protein YPTS_1195 1342393 - 1341614 - | IstB ATP binding domain-containing protein TERM 1439 1342312 - 1342326 + g 82 -11.4 -3.3506 | overlap 1342325 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPTS_1196 1343415 - 1342393 - | integrase catalytic region TERM 1440 1343366 - 1343381 + g 71 -4.6 -4.56914 | overlap 1343367 GCCCGGCTACTCATT CCCTGC TTGT GCAGGA TTTTAATTTCCATAA TERM 1441 1343437 - 1343419 - R 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPTS_1197 1343818 - 1343429 - | hypothetical protein YPTS_1198 1344301 - 1343831 - | DNA repair protein RadC TERM 1442 1344345 - 1344322 - R 70 -3.8 -4.86731 | CTCCTTTAAACAAAA GCCTCACC GGTTTATT GGCAAGGC CTGAGGGAAAAGAGA YPTS_1199 1345192 - 1344371 - | hypothetical protein TERM 1443 1345244 - 1345221 - R 100 -14.6 -5.20781 | opp_overlap 1345221 CAGGATAAAAGAAAA CGCACCGCTC GAAT GAGCAGTGCG TTTAGGGTTTGTCGA TERM 1444 1345221 - 1345244 + r 100 -12.4 -3.74347 | opp_overlap 1345221 CAGGATAAAAGAAAA CGCACCGCTC GAAT GAGCAGTGCG TTTAGGGTTTGTCGA YPTS_1200 1346295 - 1345459 - | hypothetical protein TERM 1445 1346514 - 1346525 + r 75 -5.8 -4.62441 | GAAAAATTAGCTGAA GGTG AAAA CACC TTTGTTTGTATAGAC YPTS_1201 1346900 - 1346505 - | hypothetical protein TERM 1446 1347042 - 1347024 - R 70 -6 -4.36596 | overlap 1347025 1347038 GTGATAATGAATAAA TTCGATCT ACC AGATCGAT AAAATCGATCATGAT TERM 1447 1347041 - 1347025 - R 72 -9.5 -3.21235 | overlap 1347024 1347038 TGATAATGAATAAAT TCGATCT ACC AGATCGA TAAAATCGATCATGA YPTS_1202 1347980 - 1347093 - | GTP-binding protein HSR1-related TERM 1448 1348002 - 1348022 + H 93 -12.6 -3.05844 | opp_overlap 1348002 CTCTGAATGATAAAA GGCCATCC AGAGA GGATGGCC TGTTGAAATAAGACG TERM 1449 1348022 - 1348002 - H 100 -12.6 -4.5442 | opp_overlap 1348002 CTCTGAATGATAAAA GGCCATCC AGAGA GGATGGCC TGTTGAAATAAGACG TERM 1450 1348105 - 1348139 + H 93 -2.8 -5.98675 | opp_overlap 1348104, overlap 1348107 1348115 TAACCTTATATGAAC TGGCAGGGTACAGCCA GAC TGGTTGTATTCACCTA TTTTTTGTTTTTCTG TERM 1451 1348475 - 1348493 + G 74 -3.8 -4.93296 | AGAATAAATGAGAGT GTGATTTC ACC GGTATCAC TTTTTCTGCTGGTAA TERM 1452 1348628 - 1348613 - g 79 -3.3 -5.31519 | AGACTGAAAGAAAAA GACTA TGAAAT TAGTC TGATGATTTGGCGTG YPTS_1203 1348313 - 1349749 + | hypothetical protein TERM 1453 1349750 - 1349775 + F 95 -12.7 -3.29144 | opp_overlap 1349750 TTTTCATTCTATTAA CCTGCTACAGT TGCG ATTGTAGCAGG TTATCACAAGGATAA TERM 1454 1349775 - 1349750 - f 77 -10.5 -3.16564 | opp_overlap 1349750 TTTTCATTCTATTAA CCTGCTACAGT TGCG ATTGTAGCAGG TTATCACAAGGATAA TERM 1455 1350642 - 1350676 + G 91 -6.4 -5.27335 | opp_overlap 1350642 1350644, overlap 1350644 1350665 CTTGATCCAGAGCAA TACTCGGCTTTGGCCA ATA TGGCTAAAAACGGGTG TTTTTATTTAAACAG TERM 1456 1350644 - 1350674 + G 71 -6.8 -4.27026 | opp_overlap 1350644 1350642, overlap 1350642 1350665 TGATCCAGAGCAATA CTCGGCTTTGGCCA ATA TGGCTAAAAACGGG TGTTTTTATTTAAAC YPTS_1204 1350228 - 1350812 + | hypothetical protein TERM 1457 1350824 - 1350861 + T 86 -9.9 -3.96705 | opp_overlap 1350826, overlap 1350826 GTAGGATATACGGAT AACGCTGGCAGTTTTTA GTTA TGCAAGCTGCCAGCGTA TTTGACTTTTATCGC TERM 1458 1350859 - 1350826 - T 71 -8.2 -3.41393 | opp_overlap 1350824 1350826 AGGATATACGGATAA CGCTGGCAGTTT TTAGTTATGC AAGCTGCCAGCG TATTTGACTTTTATC TERM 1459 1350826 - 1350859 + T 100 -12.5 -3.56486 | opp_overlap 1350826, overlap 1350824 AGGATATACGGATAA CGCTGGCAGTTTTTA GTTA TGCAAGCTGCCAGCG TATTTGACTTTTATC YPTS_1205 1351604 - 1350879 - | hypothetical protein YPTS_1206 1351719 - 1351946 + | phage transcriptional regulator, AlpA TERM 1460 1351961 - 1351990 + T 86 -11.5 -3.3447 | gap 1, opp_overlap 1351959 1351970 GTTTGGAAGATTATG TGGGAGAGAGTGAG AAC CGCACTC-CTCCCA TTGGCTTTAATTCTA YPTS_1207 1352129 - 1351956 - | hypothetical protein YPTS_1208 1352524 - 1353303 + | hypothetical protein YPTS_1209 1353287 - 1353511 + | hypothetical protein TERM 1461 1354198 - 1354212 + G 77 -8.6 -4.18494 | overlap 1354189 TTACAGGCGCTCTTA GTGCTT ATG AAGCAC TTTTCGATGAGAGTC TERM 1462 1354305 - 1354293 - g 89 -3.3 -5.65177 | ATACTGACAAAAAAA GATCG TAT CGAGC GAGATCTTTTAGGGA TERM 1463 1354348 - 1354361 + G 74 -3.1 -5.04987 | overlap 1354334 TGAGCGCTAATATTG CTCTT GTTC AGGAG TTTTTTCCCAATGTT TERM 1464 1354741 - 1354728 - g 83 -3.9 -5.4833 | TCATTGAATAAAAAA TTGAA AAGC TTCAA TCAAGTTGTTTATGG YPTS_1210 1353501 - 1355120 + | chromosome segregation ATPase TERM 1465 1355276 - 1355256 - T 89 -7.5 -5.00616 | opp_overlap 1355254 1355256 CGGGTTCTGAAAAAA GGCCTGAAA TTT TCACAGGCC TGTTCATGAATCAAA YPTS_1211 1356830 - 1355589 - | integrase family protein TERM 1466 1356984 - 1356963 - R 100 -7.9 -5.96219 | opp_overlap 1356963 1356971 CAGGCACAAAAAAAA CCGCAAGGC TTGC ACCATGCGG GTTCTTAGGACTTCA YPTS_1212 1357939 - 1357445 - | SsrA-binding protein YPTS_1213 1358088 - 1358522 + | cyclase/dehydrase YPTS_1214 1358515 - 1358799 + | hypothetical protein TERM 1467 1358818 - 1358796 - T 78 -4.1 -5.1101 | opp_overlap 1358797, overlap 1358797 1358800 TGAGCAGGCAAAAAA GTAAGGCAC AATCA GCGCCTTAT TTTTTGTTGTCACTC TERM 1468 1358817 - 1358797 - T 70 -7.6 -3.65883 | opp_overlap 1358797, overlap 1358796 1358800 GAGCAGGCAAAAAAG TAAGGCAC AATCA GCGCCTTA TTTTTTGTTGTCACT TERM 1469 1358797 - 1358817 + T 87 -5.4 -5.56673 | opp_overlap 1358797 1358796 1358800 GAGCAGGCAAAAAAG TAAGGCAC AATCA GCGCCTTA TTTTTTGTTGTCACT YPTS_1215 1359290 - 1358949 - | SmpA/OmlA domain-containing protein TERM 1470 1359018 - 1359034 + g 74 -3 -5.14563 | ATCAAAGGTCAACGT TAACGT TTGTT GCGTTA TTTTTTCGTGACCAG YPTS_1216 1361065 - 1359404 - | DNA repair protein RecN YPTS_1217 1361919 - 1361152 - | ATP-NAD/AcoX kinase YPTS_1218 1362157 - 1362735 + | GrpE protein TERM 1471 1362770 - 1362754 - T 85 -9.4 -4.19238 | GCTCTAACGTTAAAA GGCACC TCAAC GGTGCC TCAAATTGCTAACAA TERM 1472 1362782 - 1362813 + T 79 -10.9 -3.09823 | opp_overlap 1362787, overlap 1362776 1362787 TGCCTCAAATTGCTA ACAAAGTCCTGGC CTCCTA GCCGGGACTTTGC TCTAATTTTACGCGG TERM 1473 1362787 - 1362808 + T 83 -9.4 -3.92694 | opp_overlap 1362787, overlap 1362782 1362776 CAAATTGCTAACAAA GTCCTGGC CTCCTA GCCGGGAC TTTGCTCTAATTTTA TERM 1474 1362808 - 1362787 - T 76 -7.9 -4.19371 | opp_overlap 1362782 1362776 1362787 CAAATTGCTAACAAA GTCCTGGCC TCCT AGCCGGGAC TTTGCTCTAATTTTA YPTS_1219 1364123 - 1362843 - | citrate synthase I TERM 1475 1363939 - 1363957 + g 70 -2.5 -4.8622 | gap 1 AGCAAAATACCCTGA TCACC-AT CAAT ATAGGTGA TTTTTGATTCGCAGG YPTS_1220 1364833 - 1365222 + | succinate dehydrogenase, cytochrome b556 subunit YPTS_1221 1365216 - 1365563 + | succinate dehydrogenase, hydrophobic membrane anchor protein TERM 1476 1366285 - 1366316 + G 79 -11.6 -3.18264 | gap 1, opp_overlap 1366270 1366277, overlap 1366287 TGGAAATGTGGCAGT TCCACCCG-ACCGGT ATT GCCGGTGCGGGTGTA TTAGTGACTGAAGGC TERM 1477 1366287 - 1366314 + G 90 -14.2 -3.1552 | gap 1, opp_overlap 1366270 1366277, overlap 1366285 GAAATGTGGCAGTTC CACCCG-ACCGGT ATT GCCGGTGCGGGTG TATTAGTGACTGAAG YPTS_1222 1365564 - 1367330 + | succinate dehydrogenase, flavoprotein subunit YPTS_1223 1367380 - 1368096 + | succinate dehydrogenase and fumarate reductase iron-sulfur protein TERM 1478 1368235 - 1368256 + F 86 -12.3 -2.53263 | opp_overlap 1368235 ATGTGAGTTTATTAA CCCGGAGAG GGGA TTCTCCGGG TAGCTTCACGGTAGG TERM 1479 1368256 - 1368235 - f 84 -11.6 -3.16683 | opp_overlap 1368235 ATGTGAGTTTATTAA CCCGGAGA GGGGAT TCTCCGGG TAGCTTCACGGTAGG TERM 1480 1368359 - 1368345 - f 70 -7.1 -3.75378 | AGGTCCATAACAGAA CGTGC ATTGA GCACG TCGAGTGAACCGTTT TERM 1481 1368511 - 1368538 + G 80 -6.4 -4.68994 | gap 1, opp_overlap 1368511, overlap 1368514 GGCGGGCGCGAACCA GTCCTACATAGAG CAG CTCTATGAA-GAC TTTTTAACTGATCCT TERM 1482 1369011 - 1368995 - g 82 -5.1 -5.12971 | opp_overlap 1368993 1368995, overlap 1368996 AACACCGAAGAAAAA CGCTG GATTCAG CAGCG TATTGAATCGGTTGT TERM 1483 1370131 - 1370114 - g 76 -8.3 -4.08919 | AAAGTTGAAATGAAA CGCCTGC AAGA GCTGGCG CGTCGGATCAGCTCT YPTS_1224 1368452 - 1371259 + | 2-oxoglutarate dehydrogenase, E1 subunit YPTS_1225 1371289 - 1372512 + | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase TERM 1484 1372597 - 1372584 - f 70 -9.5 -2.81045 | overlap 1372581 TTATCCAGAACACTA CGGGC TTCG GCCCG TCTCAGACCTTATAT TERM 1485 1372879 - 1372865 - g 73 -2.1 -5.08824 | overlap 1372866 TGGCTAGGTAAAAAA CTGGT CACTT ACCAA ACAGATGCCAACGGA YPTS_1226 1372625 - 1373791 + | succinyl-CoA synthetase, beta subunit YPTS_1227 1373791 - 1374663 + | succinyl-CoA synthetase, alpha subunit TERM 1486 1374710 - 1374727 + F 100 -12.7 -5.252 | opp_overlap 1374708 CTAACGCGACATACT GGCCACC TTTT GGTGGCC TTTTTTATACAAATG TERM 1487 1374965 - 1374949 - f 70 -3.7 -4.7889 | overlap 1374957 ATAAATATGTAAAAA TCAAAAC TGT GATTTGA CTCACTCTGAATTTA TERM 1488 1375169 - 1375190 + F 70 -8.1 -3.62046 | opp_overlap 1375168 1375169 CATATAGGCTTAAAT TGTCGTAGA TCAA TTTACGACA TTGTTACCAAAATGC TERM 1489 1375475 - 1375491 + G 78 -5.1 -4.87786 | ACAGTTTGCCTTAAC GGCAATG TAC CATTTCC TTTTTGTCCCATTAA YPTS_1228 1375431 - 1376999 + | cytochrome bd ubiquinol oxidase subunit I TERM 1490 1377158 - 1377139 - g 80 -7.2 -4.60487 | opp_overlap 1377139 TATCATCGGTAAAAA TGATACAG AGCG CCGTATCA TGATTAACTCGATTG YPTS_1229 1377014 - 1378153 + | cytochrome d ubiquinol oxidase, subunit II YPTS_1230 1378166 - 1378300 + | cyd operon protein YbgT TERM 1491 1378325 - 1378341 + GF 84 -10.8 -3.69323 | opp_overlap 1378325 CGAATTAATGGATAA GGGCCC ATTGA GGGCCC TTTCACTGGTGCTCG TERM 1492 1378341 - 1378325 - gf 83 -10.8 -3.45134 | opp_overlap 1378325 CGAATTAATGGATAA GGGCCC ATTGA GGGCCC TTTCACTGGTGCTCG YPTS_1231 1378245 - 1378577 + | cyd operon protein YbgE TERM 1493 1378597 - 1378624 + F 76 -7 -4.57218 | opp_overlap 1378595, overlap 1378600 1378601 CCTTGAGCACAATCC TACCTATGGGCC ATCC GGCCCATAATTA TTTTCGTTCTATTCT TERM 1494 1378600 - 1378621 + F 86 -8.7 -4.36586 | opp_overlap 1378595, overlap 1378597 1378601 TGAGCACAATCCTAC CTATGGGCC ATCC GGCCCATAA TTATTTTCGTTCTAT TERM 1495 1378601 - 1378620 + F 86 -12.2 -3.20325 | opp_overlap 1378595, overlap 1378600 1378597 GAGCACAATCCTACC TATGGGCC ATCC GGCCCATA ATTATTTTCGTTCTA YPTS_1232 1378709 - 1379110 + | tol-pal system-associated acyl-CoA thioesterase YPTS_1233 1379119 - 1379796 + | protein TolQ YPTS_1234 1379809 - 1380237 + | protein TolR TERM 1496 1380759 - 1380746 - g 74 -3.1 -5.11254 | AACAACAAAAACAAA TCGCT GAAC AGCAA AAGCAGGCCGCTGAA TERM 1497 1380944 - 1380925 - g 75 -3.4 -5.15969 | overlap 1380928 GCTGAAGCCAAAAAA GAAGCTGC TGTT GCCGCTGC GGCGAAGAAACAAGC TERM 1498 1381061 - 1381051 - g 79 -2.4 -5.38047 | GATGCAGAGAAAAAA GCCG CTG CTGC TAAAAAAGTTGCTGC TERM 1499 1381121 - 1381099 - g 100 -9 -5.46657 | opp_overlap 1381118 1381120, overlap 1381071 1381101 GAGGCCAAGAAAAAA GCGGCAGCAG AAG CGGCTGCCTC AACGGATGTTGATGA TERM 1500 1381119 - 1381101 - g 71 -10.2 -2.91061 | opp_overlap 1381118, overlap 1381071 1381099 GGCCAAGAAAAAAGC GGCAGCAG AAG CGGCTGCC TCAACGGATGTTGAT TERM 1501 1381191 - 1381167 - g 75 -5.1 -4.70879 | gap 1 GGCAAACGCTAAAAA TGCA-CCGAA GAGTGG TTCGGGTGCA GGTGCCGCTGCTGCC YPTS_1235 1380334 - 1381509 + | protein TolA YPTS_1236 1381629 - 1382921 + | beta-propeller repeat-containing to-pal system protein TolB YPTS_1237 1382972 - 1383478 + | peptidoglycan-associated lipoprotein YPTS_1238 1383488 - 1384297 + | tol-pal system protein YbgF TERM 1502 1384307 - 1384341 + F 100 -14.4 -4.0162 | CTTTAGCTTTTTTGA GCCCAGGATTTAGTCA ATT TGACTGATTTCTGGGC TTTATCGTGTGAAGA TERM 1503 1384992 - 1384977 - f 73 -9 -3.5399 | overlap 1384980 AGCAGAGCGAGACAA CAACGC GCCA GCGTTG ACCCGAAGGGCGAGT TERM 1504 1385227 - 1385237 + F 70 -5.4 -4.54026 | opp_overlap 1385212, overlap 1385212 1385211 TTTGGCGACTTTTTG CCAA ATA TTGG TTATTTTGTTTAGGA TERM 1505 1386118 - 1386134 + G 77 -4.4 -5.02074 | gap 1 GAAAACGTTAATTGT TGCCACC GATC GG-GGCA TTTTTTACAAGATGC YPTS_1239 1385339 - 1386400 + | quinolinate synthetase complex, A subunit YPTS_1240 1386522 - 1387247 + | nicotinamide mononucleotide transporter PnuC YPTS_1241 1388300 - 1387362 - | cation diffusion facilitator family transporter TERM 1506 1388062 - 1388043 - G 71 -6.4 -4.15044 | gap 1 CGCTGCGTTAACAAA GGCCG-CGA GTG TCGTCAGCC GTAGGTAGCCAAAAG YPTS_1242 1388352 - 1388477 + | hypothetical protein TERM 1507 1389190 - 1389168 - g 71 -9 -3.51411 | opp_overlap 1389177 1389178, overlap 1389164 ACTCGTCGAAATTAA CGACAGCGGG TTA CCGGCCGCCG GTGAGTTTTTGGATA TERM 1508 1389177 - 1389195 + G 75 -5.2 -4.72333 | opp_overlap 1389168 1389164, overlap 1389178 AATTAACGACAGCGG GTTACCGG CCG CCGGTGAG TTTTTGGATATGATT TERM 1509 1389343 - 1389327 - g 83 -8.7 -4.56597 | CGTTGGTTTTAAAAA TGGTACC GAC GGCACCA TTAAAGTGGCTATTG TERM 1510 1389375 - 1389389 + G 72 -5.7 -4.33417 | opp_overlap 1389369 TGCGATCAACGCGGC CAGTG CCCCA CACTG TTTCTTGTCGGTGAC YPTS_1243 1388767 - 1389819 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1511 1389950 - 1389973 + T 100 -7.5 -5.62219 | gap 1, opp_overlap 1389950 GCCGTCAATAAAAAA CCCCG-ACAT TATTC ATGTACGGGG TTTTTTTACTGTGTT TERM 1512 1389973 - 1389950 - T 95 -7.5 -5.4505 | gap 1, opp_overlap 1389950 GCCGTCAATAAAAAA CCCCG-ACAT TATTC ATGTACGGGG TTTTTTTACTGTGTT YPTS_1244 1390753 - 1390001 - | phosphoglycerate mutase 1 family protein YPTS_1245 1391435 - 1391100 - | PsiF repeat-containing protein YPTS_1246 1392798 - 1391728 - | galactose mutarotase YPTS_1247 1393943 - 1392792 - | galactokinase YPTS_1248 1394992 - 1393940 - | galactose-1-phosphate uridylyltransferase YPTS_1249 1396018 - 1395002 - | UDP-glucose 4-epimerase TERM 1513 1395165 - 1395184 + g 74 -9.2 -3.76224 | opp_overlap 1395159 GGGGCAAAATGGTAG GCCAGTGG TTTA CCACAGGC TTTACTGAATGCGGC YPTS_1250 1397196 - 1396378 - | abortive infection protein TERM 1514 1396787 - 1396803 + g 75 -3.6 -5.09426 | ACAACCCAACCCATG CGCCCG ACTGA TGGGTG TTTTTTCACCTTGAA TERM 1515 1397253 - 1397263 + r 78 -2.4 -5.44119 | CCTAAATGACGGTTT AGCC TAA GGCA TTTTTTTGAGCTAAA YPTS_1251 1397379 - 1397251 - | hypothetical protein YPTS_1252 1398903 - 1397413 - | ABC transporter related TERM 1516 1397834 - 1397819 - G 77 -4 -5.16572 | gap 1, overlap 1397830 1397833 ATCGAATCGAAAAAA CCG-GAT AAA ATCACGG TACGTACACGGGTGC TERM 1517 1398562 - 1398540 - G 78 -11.3 -3.38046 | overlap 1398538 GGCTGATTCCAAATA GCGCTGCCA GTTGT TGACAGCGC TGCGGGTCACGGGCC YPTS_1253 1399804 - 1399013 - | ModE family transcriptional regulator TERM 1518 1399960 - 1399999 + H 78 -9.6 -3.59279 | gap 1, opp_overlap 1399962 1399974, overlap 1399992 ATAACAGGGTTAATT CATTGCTG-ATATCATTTA CAG TAAATGATAGGCAGCAGTG TTGGTTATTGTGATA YPTS_1254 1400055 - 1400207 + | hypothetical protein TERM 1519 1400258 - 1400281 + F 89 -7.4 -5.04175 | TCTCTGATTTCTGAA TGCCTGGCGT ATAA ACGTTGGGCA TTTTTGTATCATTCC YPTS_1255 1400442 - 1401221 + | molybdenum ABC transporter, periplasmic molybdate-binding protein YPTS_1256 1401221 - 1401916 + | molybdate ABC transporter, inner membrane subunit TERM 1520 1401914 - 1401896 - f 100 -8.8 -5.01732 | overlap 1401897 AATTGGGGTAAAAAA CGCATGGG GGC CCCATGCT AGAACTGAATTTCAG TERM 1521 1401913 - 1401897 - f 100 -12.3 -3.60316 | overlap 1401896 ATTGGGGTAAAAAAC GCATGGG GGC CCCATGC TAGAACTGAATTTCA YPTS_1257 1401910 - 1402989 + | molybdate ABC transporter, ATPase subunit YPTS_1258 1403866 - 1403045 - | Cof-like hydrolase YPTS_1259 1404157 - 1405161 + | 6-phosphogluconolactonase YPTS_1260 1406626 - 1405346 - | adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 1522 1405492 - 1405482 - G 74 -6.8 -4.36914 | CCCTGTTCGACAAAA CTGC GTT GCAG GCGGGCGACATTAAC YPTS_1261 1406725 - 1407762 + | biotin synthase YPTS_1262 1407762 - 1408913 + | 8-amino-7-oxononanoate synthase TERM 1523 1409424 - 1409435 + G 74 -3 -5.09426 | GGTGGATGGTCAGCG TCAT GTAA ATGA TTTTTTGCCATTACA YPTS_1263 1408897 - 1409700 + | biotin biosynthesis protein BioC TERM 1524 1409906 - 1409919 + G 78 -5.3 -5.00616 | opp_overlap 1409906 CTCGGTTACTCACAA GTGAA TCCG TTCAC TTTTTTGGAAGCGAC YPTS_1264 1409678 - 1410415 + | dethiobiotin synthase YPTS_1265 1411353 - 1410643 - | ABC transporter related TERM 1525 1411016 - 1410996 - G 100 -9 -4.6856 | gap 1, opp_overlap 1410995 1410996 GAAATAGCTCAAAAA CCCAGCCCG GAAT CGGG-TGGG ATTTGTGGCGGCCTG TERM 1526 1411124 - 1411147 + g 76 -8.2 -4.09739 | CCTAACGCATTGCGT CTTTCAACAG GCTG CTGTTGCAAG TTTTGCGGGGGTTCA TERM 1527 1411970 - 1411982 + H 76 -2.7 -5.26119 | overlap 1411971 GGCCGTCCATCTCCA TTTCA TCG TGAAG TTTTGTTTTTCGCCA TERM 1528 1412552 - 1412533 - g 73 -7.8 -4.08216 | overlap 1412534 1412548 1412550 GGAGGGGCTGGAAAA TGGTCTGG CACA CCAGACCC TGCTAGGCGTAACAG TERM 1529 1412551 - 1412534 - g 74 -11.3 -3.04715 | overlap 1412533 1412548 1412550 GAGGGGCTGGAAAAT GGTCTGG CACA CCAGACC CTGCTAGGCGTAACA YPTS_1266 1412444 - 1414459 + | excinuclease ABC, B subunit YPTS_1267 1414770 - 1415015 + | hypothetical protein YPTS_1268 1416069 - 1415146 - | protein of unknown function UPF0052 and CofD YPTS_1269 1416349 - 1416203 - | hypothetical protein YPTS_1270 1416601 - 1417581 + | molybdenum cofactor biosynthesis protein A YPTS_1271 1417804 - 1418283 + | molybdenum cofactor biosynthesis protein C YPTS_1272 1418280 - 1418525 + | molybdopterin converting factor, subunit 1 YPTS_1273 1418525 - 1418980 + | molybdopterin biosynthesis MoaE protein TERM 1530 1419323 - 1419336 + G 83 -3.8 -5.38549 | overlap 1419321 TGGCTTGATTATTGC CCAG CTTGGT CTGG TTTTTGTTATTTCCG YPTS_1274 1419123 - 1419833 + | hypothetical protein TERM 1531 1419896 - 1419916 + T 100 -11.2 -5.77734 | opp_overlap 1419896 GTTTGAGATAGTAAA GGACACCA AAATC TGGTGTCC TTTTTGTTTTTCTTT TERM 1532 1419916 - 1419896 - T 100 -11.9 -3.88498 | opp_overlap 1419896 GTTTGAGATAGTAAA GGACACCAA AAT CTGGTGTCC TTTTTGTTTTTCTTT YPTS_1275 1421747 - 1420044 - | choline dehydrogenase YPTS_1276 1423242 - 1421770 - | betaine aldehyde dehydrogenase TERM 1533 1423087 - 1423099 + g 75 -10.5 -3.3197 | CTGACCTTGTTTGGC GGCGG CTA CCGCC TTATCAACATCCTGT YPTS_1277 1423896 - 1423300 - | TetR family transcriptional regulator TERM 1534 1423719 - 1423735 + g 71 -4.4 -4.82901 | opp_overlap 1423711, overlap 1423711 TCAGATACCTCATTG TGGCTT CTAGC AGGCCA TTTTTGTCACGGAAA YPTS_1278 1424262 - 1426310 + | choline/carnitine/betaine transporter YPTS_1279 1426542 - 1427435 + | LysR family transcriptional regulator YPTS_1280 1428366 - 1427473 - | hypothetical protein YPTS_1281 1428667 - 1429530 + | xanthosine phosphorylase TERM 1535 1430307 - 1430292 - g 77 -4.8 -4.9138 | opp_overlap 1430292 ATTATTTAAACAAAA GAAAAT GGCT ATTTTC TTCCTGTTTGCCATG YPTS_1282 1429669 - 1430925 + | nucleoside transporter TERM 1536 1430967 - 1431010 + T 74 -6.9 -4.37092 | gap 1, opp_overlap 1430974, overlap 1430972 1430973 1430974 CCAAAATAGACTCTC CAGATA-ACCCCTGATTAAT CAAAT GTTAATCAGGGGAGTTTCTG TTTTATCGGCAACCT TERM 1537 1430972 - 1431004 + T 73 -5.6 -4.51238 | opp_overlap 1430974, overlap 1430967 1430973 1430974 ATAGACTCTCCAGAT AACCCCTGATTAAT CAAAT GTTAATCAGGGGAG TTTCTGTTTTATCGG TERM 1538 1430973 - 1431003 + T 71 -9.1 -3.29658 | opp_overlap 1430974, overlap 1430972 1430967 1430974 TAGACTCTCCAGATA ACCCCTGATTAAT CAAAT GTTAATCAGGGGA GTTTCTGTTTTATCG TERM 1539 1430974 - 1431002 + T 86 -12.6 -2.5671 | opp_overlap 1430974, overlap 1430973 1430972 1430967 AGACTCTCCAGATAA CCCCTGATTAAT CAAAT GTTAATCAGGGG AGTTTCTGTTTTATC TERM 1540 1431002 - 1430974 - T 91 -11.9 -3.49102 | opp_overlap 1430974 1430973 1430972 1430967 AGACTCTCCAGATAA CCCCTGATTAA TCAAATG TTAATCAGGGG AGTTTCTGTTTTATC YPTS_1283 1431486 - 1431013 - | hypothetical protein TERM 1541 1431795 - 1431748 - H 100 -21 -4.76041 | gap 1, opp_overlap 1431758 GACATTCAGTAAAAA CGGGTAATTATTACCCACAGTAG CGG CGA-TGTGGGTAATAATTACCCG CCACCAATTCATTGA TERM 1542 1432456 - 1432476 + G 77 -4 -5.12474 | opp_overlap 1432450 1432456 GCGATGCAAGCAAAA GATATTCG CAATA CGATTATC TTTTTGTCTATTCTC YPTS_1284 1431844 - 1433658 + | signal transduction histidine kinase, nitrogen specific, NtrB YPTS_1285 1433645 - 1435009 + | two component, sigma54 specific, Fis family transcriptional regulator YPTS_1286 1435357 - 1436466 + | NADH:flavin oxidoreductase/NADH oxidase YPTS_1287 1437378 - 1436467 - | LysR family transcriptional regulator TERM 1543 1437629 - 1437619 - H 90 -4 -5.64274 | opp_overlap 1437619, overlap 1437625 TCATGGATAAAAAAA CAAT CAT ATTG ATTTCCTCAATAACA YPTS_1288 1437948 - 1438274 + | ethyl tert-butyl ether degradation EthD YPTS_1289 1439419 - 1438313 - | ABC-2 type transporter YPTS_1290 1440607 - 1439432 - | ABC-2 type transporter TERM 1544 1439685 - 1439666 - G 73 -5 -4.66609 | gap 1, opp_overlap 1439675, overlap 1439643 1439667 1439668 TACCGCAGGCAAAAA TG-CCGCGT TCA ACGCGATCA TCGCGGCGTTAAATT YPTS_1291 1442354 - 1440612 - | ABC transporter related YPTS_1292 1443354 - 1442368 - | secretion protein HlyD family protein TERM 1545 1442473 - 1442486 + g 71 -4.5 -4.63184 | GTCGGTGCGTAAATC CGGTG TTTC CACTG TTTTTGGCGTGAATT YPTS_1293 1444116 - 1443406 - | TetR family transcriptional regulator YPTS_1294 1444507 - 1445862 + | DEAD/DEAH box helicase domain-containing protein TERM 1546 1445922 - 1445905 - f 76 -6.9 -4.431 | opp_overlap 1445905 TATTCACTGATAAAA CCGCTTC TTAG GAGGCGG TTAATAAGATGATCA TERM 1547 1445942 - 1445970 + F 100 -13.2 -4.86731 | opp_overlap 1445935 TAAGATGATCACCCC CACCCTGTGAGC GGTAA GCTGACAGGGTG TTTTCTTTGGGAGGG YPTS_1295 1445992 - 1446258 + | hypothetical protein YPTS_1296 1446314 - 1446547 + | transposase YPTS_1297 1447121 - 1447288 + | hypothetical protein YPTS_1298 1447322 - 1447678 + | hypothetical protein YPTS_1299 1447837 - 1448055 + | hypothetical protein YPTS_1300 1448139 - 1448453 + | hypothetical protein TERM 1548 1448506 - 1448534 + F 100 -9.6 -4.86731 | opp_overlap 1448494 TAAGATGGTCACTCC CACCTTGTGAGC GGTAA GCTGACAGGGTG TTTTCTTTGGAAGGG YPTS_1301 1448556 - 1448675 + | hypothetical protein YPTS_1302 1448675 - 1449130 + | transposase TERM 1549 1449163 - 1449196 + F 71 -9.8 -2.71681 | opp_overlap 1449153 1449181, overlap 1449154 AGCAAGCGTTAGGTA GCGTTAAATCTG ACCTAAGTAA CAGATTTAACGC TAATTAAAGCCGTTA YPTS_1303 1449570 - 1450514 + | dihydrouridine synthase DuS YPTS_1304 1450767 - 1450588 - | hypothetical protein YPTS_1305 1451071 - 1452042 + | peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 TERM 1550 1452066 - 1452095 + T 100 -13 -3.7791 | opp_overlap 1452066 CATCGCGACTGAGAA GCGGAATTTGCT AGCAGA GGCAAATTCCGC TTTAGTGACTAATTG TERM 1551 1452095 - 1452066 - T 95 -12.3 -3.35996 | opp_overlap 1452066 CATCGCGACTGAGAA GCGGAATTTGC TAGCAGAG GCAAATTCCGC TTTAGTGACTAATTG YPTS_1306 1453875 - 1452163 - | D-lactate dehydrogenase membrane binding TERM 1552 1452964 - 1452936 - G 73 -3.2 -4.87626 | gap 1 CCGCAATATCAAAAA TATCAC-GGTGCA GATA TTCACCCGCGATA GGTAAATGTTTAAAG TERM 1553 1454547 - 1454537 - g 71 -6.8 -4.13995 | opp_overlap 1454536 GCTTGATAAATTAAA GGCA GAA TGCC GTGATTTTGCCAATA YPTS_1307 1454085 - 1454624 + | adenylyl cyclase CyaB YPTS_1308 1454991 - 1454650 - | HNH endonuclease TERM 1554 1455087 - 1455101 + H 76 -2.7 -5.34365 | opp_overlap 1455081 1455089 ATACTCAAACGCCAA CACGC CATTA GCGCG TTTTTCTTCTTATCG TERM 1555 1455372 - 1455385 + G 73 -2.3 -5.0707 | opp_overlap 1455346 1455373, overlap 1455373 TGCAGTCGTGCAACA AGACC TGAG GGTCG TTTATTTTTATATTT YPTS_1309 1455304 - 1456407 + | hypothetical protein YPTS_1310 1456592 - 1456840 + | transglycosylase-associated protein TERM 1556 1456976 - 1456937 - f 80 -8.7 -3.96298 | opp_overlap 1456948, overlap 1456942 1456948 CAGTCATTAATTAAA CACACGAAAAAGGTGGC TATTTT GTCACCTTTTTCACATG CAACTATCATCAATA TERM 1557 1456948 - 1456965 + F 71 -4.8 -4.62069 | opp_overlap 1456942 1456937 1456948 TAAACACACGAAAAA GGTGGC TATTTT GTCACC TTTTTCACATGCAAC TERM 1558 1457681 - 1457671 - g 73 -5.4 -4.62069 | opp_overlap 1457671, overlap 1457645 1457673 1457678 GTTGGACCCTAAAAA TACG ACA CGTA TTATGAATACGTTAC YPTS_1311 1457048 - 1457884 + | phosphonate ABC transporter, ATPase subunit YPTS_1312 1457921 - 1458850 + | phosphonate ABC transporter, periplasmic phosphonate binding protein TERM 1559 1458873 - 1458899 + F 75 -5.9 -4.70659 | gap 1, opp_overlap 1458875, overlap 1458875 1458877 CAACGGATAAAACAA CA-TGGCTCTGG TTCG CCGGAGCTATTG TTTTTAGGTGTGGCA TERM 1560 1458875 - 1458896 + F 93 -8.7 -4.46215 | opp_overlap 1458875, overlap 1458873 1458877 ACGGATAAAACAACA TGGCTCTGG TTCG CCGGAGCTA TTGTTTTTAGGTGTG TERM 1561 1458877 - 1458894 + F 78 -9.1 -3.82353 | opp_overlap 1458875, overlap 1458875 1458873 GGATAAAACAACATG GCTCTGG TTCG CCGGAGC TATTGTTTTTAGGTG YPTS_1313 1458954 - 1459814 + | phosphonate ABC transporter, inner membrane subunit TERM 1562 1459892 - 1459870 - g 74 -4 -5.00196 | GCTGAAACAACAAAA TCCGCAGCTT TTC AGGCAGCAGA AACGTTATATCAGAT YPTS_1314 1459817 - 1460698 + | phosphonate ABC transporter, inner membrane subunit TERM 1563 1460866 - 1460881 + F 74 -4 -4.94243 | gap 1, overlap 1460868 1460870 CAATACTGCCCGCTA GA-CGTC AAA GACGCTC TTTTAGTTTTTTTGC TERM 1564 1461231 - 1461219 - g 75 -3.3 -5.00884 | overlap 1461220 ATTGTGTTGAAAAAA CTGCG TGT CGCAT TCGAATTGAAAGACA YPTS_1315 1460943 - 1461416 + | hypothetical protein YPTS_1316 1461900 - 1463168 + | urea ABC transporter, urea binding protein TERM 1565 1463228 - 1463259 + F 100 -10.9 -4.57837 | overlap 1463230 GGTAATCGCTGTGAC GTGCTGATGTCAG CGGGAT CTGACGTCAGCTC TTTTTCACCACATAT TERM 1566 1463230 - 1463257 + F 100 -12.1 -3.90316 | overlap 1463228 TAATCGCTGTGACGT GCTGATGTCAG CGGGAT CTGACGTCAGC TCTTTTTCACCACAT YPTS_1317 1463292 - 1464893 + | urea ABC transporter, permease protein UrtB YPTS_1318 1464893 - 1465969 + | urea ABC transporter, permease protein UrtC TERM 1567 1466395 - 1466385 - g 89 -3.2 -5.61596 | ACTGGCACAAAAAAA CCAT AAA ACGG TGTGGGCCAGCTTGT YPTS_1319 1465966 - 1466802 + | urea ABC transporter, ATP-binding protein UrtD TERM 1568 1467279 - 1467293 + G 70 -7.8 -3.90318 | opp_overlap 1467270 1467268 1467279 ACAAGAGATGAAGCA TCGCCG TGG TGGCGA TTTATCCGGTGGTCA TERM 1569 1467457 - 1467471 + G 100 -10 -4.67635 | GGGGATATGGCTATC CTGCTC GTG GAGCAG TTTTATGATTTTGCC YPTS_1320 1466833 - 1467594 + | urea ABC transporter, ATP-binding protein UrtE YPTS_1321 1467709 - 1468566 + | hypothetical protein YPTS_1322 1468590 - 1470005 + | pyridoxal-dependent decarboxylase TERM 1570 1470232 - 1470250 + T 72 -8.1 -3.83026 | ATGAGTCATGTCAGT GGCTGGT GGTGA GCCAGCC TTTGGTATCACGCCA YPTS_1323 1471112 - 1470258 - | rhodanese domain-containing protein TERM 1571 1472045 - 1472034 - g 72 -5.8 -4.31737 | AAAACCACCAATAAA TCCC AACT GGGA GCAACCAAAGTCGTA YPTS_1324 1471848 - 1472780 + | substrate-binding region of ABC-type glycine betaine transport system TERM 1572 1472787 - 1472777 - f 71 -4 -4.7497 | overlap 1472784 CGGATTTATTAAAAA CTAA CCA TTAG CTGGGGGAGCCAGCC YPTS_1325 1473041 - 1474195 + | binding-protein-dependent transport systems inner membrane component YPTS_1326 1474192 - 1475130 + | ABC transporter related YPTS_1327 1475127 - 1475963 + | binding-protein-dependent transport systems inner membrane component TERM 1573 1477448 - 1477464 + G 76 -10.9 -3.13376 | overlap 1477433 1477447 1477446 1477442 TATTTCGCCGAATGC GGCCAAA GAG TTTGGCC TGGTTTCTTCCGTTT YPTS_1328 1476417 - 1477751 + | amino acid permease-associated region TERM 1574 1479991 - 1480014 + G 74 -11.1 -2.81207 | overlap 1479990 CGGGGGAGAGTTTTG GTAGCCATG AAGAAC CATGGCTAC GTTATATCTTAAGTA YPTS_1329 1477821 - 1480127 + | Orn/Lys/Arg decarboxylase major region YPTS_1330 1480463 - 1480245 - | hypothetical protein YPTS_1331 1481478 - 1480588 - | hypothetical protein TERM 1575 1481826 - 1481809 - R 100 -12.7 -5.0133 | GAGTGGCGTAAAAAA GCCGGGA ATAA TCCCGGC ATAATAAATACATTC YPTS_1332 1483005 - 1481890 - | porin TERM 1576 1482139 - 1482152 + g 73 -5.3 -4.63218 | opp_overlap 1482127 1482139, overlap 1482127 ATATTGAGCCACTAA CTCAA TGTT TTGAG TTTTATTAGCAAAAC TERM 1577 1483175 - 1483187 + H 74 -7.7 -4.07568 | overlap 1483164 1483185 TTCTGCTTTGGTTAA CACCA AGC TGGTG TTTTAGCGCGAGCGA TERM 1578 1484166 - 1484156 - g 73 -2.4 -5.02476 | ATACCGGCCAAAAAA TCCC CCT GGGC TCGCCCATCCTGAAC TERM 1579 1484518 - 1484508 - g 73 -5.4 -4.65895 | GCGGCGATGGAAAAA GCAT CGA ATGC GCCGATTTCTAAATG YPTS_1333 1483275 - 1485455 + | helicase c2 TERM 1580 1485501 - 1485459 - T 84 -6.5 -4.93318 | gap 1, overlap 1485461 GATAAGCCATAAAAA TACACCTCCAAATGTCAG GGGGTTAT CCAACATTTGG-GGTGCA GTTCAAAGGGGCTGA TERM 1581 1485499 - 1485461 - T 71 -6.9 -4.07789 | gap 1, overlap 1485459 TAAGCCATAAAAATA CACCTCCAAATGTCAG GGGGTTAT CCAACATTTGG-GGTG CAGTTCAAAGGGGCT YPTS_1334 1486962 - 1485523 - | catalase domain-containing protein TERM 1582 1485648 - 1485628 - G 73 -9.7 -3.31501 | overlap 1485629 AGGAACTTGCGATAA CTCACCCGC AAT ACGGGTGAA CATGCGTTGATGCTC TERM 1583 1485647 - 1485629 - G 72 -11 -2.58579 | overlap 1485628 GGAACTTGCGATAAC TCACCCGC AAT ACGGGTGA ACATGCGTTGATGCT TERM 1584 1486688 - 1486703 + g 87 -5.4 -5.42862 | opp_overlap 1486688 GCCACAGTGGAGAAG CGGACA AACA TGTCTG TTTTTTTACCGATCT YPTS_1335 1487323 - 1487865 + | YfaZ family protein TERM 1585 1488033 - 1488066 + T 100 -17.7 -3.83006 | gap 1, opp_overlap 1488033 1488036, overlap 1488036 CTTTGGGTTAACGTA TAAGGGCGCAT-TCCT ATC AGGATATGCGCCCTTA TTATTGCTTACGTAT TERM 1586 1488066 - 1488033 - T 100 -17.7 -2.52464 | gap 1, opp_overlap 1488033 1488036, overlap 1488036 CTTTGGGTTAACGTA TAAGGGCGCAT-TCCT ATC AGGATATGCGCCCTTA TTATTGCTTACGTAT TERM 1587 1488036 - 1488063 + T 100 -15 -4.0342 | gap 1, opp_overlap 1488033 1488036, overlap 1488033 TGGGTTAACGTATAA GGGCGCAT-TCCT ATC AGGATATGCGCCC TTATTATTGCTTACG TERM 1588 1488063 - 1488036 - T 100 -15 -3.41878 | gap 1, opp_overlap 1488036 1488033, overlap 1488033 TGGGTTAACGTATAA GGGCGCAT-TCCT ATC AGGATATGCGCCC TTATTATTGCTTACG YPTS_1336 1489289 - 1488081 - | aromatic amino acid transporter YPTS_1337 1489909 - 1491102 + | competence/damage-inducible protein CinA TERM 1589 1491128 - 1491149 + T 95 -13 -3.20207 | opp_overlap 1491122 ATGTTAATATTTAGC CCAGGCGC GGAATA GCGCCTGG TTAATGAGTGCTATT YPTS_1338 1491669 - 1491160 - | proteinase inhibitor I11 ecotin YPTS_1339 1491961 - 1491704 - | ferredoxin YPTS_1340 1493095 - 1491965 - | ribonucleotide reductase YPTS_1341 1495545 - 1493257 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 1590 1493849 - 1493830 - G 74 -10.8 -3.03007 | overlap 1493845 AATACCTTGTGAATA CGTGGTTT CGTT AAACCACG GGCAAGCGCCTTGTT TERM 1591 1494654 - 1494637 - G 73 -8.4 -3.7941 | CATTGGGTAGAACAA CGTGGC CGCGCC GCCACG AACACCGCCCTGTGA TERM 1592 1496017 - 1495996 - R 81 -10.9 -3.27786 | gap 1, opp_overlap 1495990 1495989 1496011, overlap 1495988 GGGAAAAGCCAGGAA GAGCAGGTGC TTG GC-CCTGCTC CCAGTGGGTTCTACG YPTS_1342 1496767 - 1496039 - | ubiquinone biosynthesis O-methyltransferase TERM 1593 1497693 - 1497672 - g 72 -5.9 -4.48263 | overlap 1497664 TATAGAAGATGAAAA CATCAGC ATTGAAGG GCTGATG GAGTATATCCCTGGC TERM 1594 1497744 - 1497724 - g 78 -11.9 -3.03771 | opp_overlap 1497722 1497719 CCAGACTTCCCAACA GCAGCCATT ATT AATGGCCGC CGTGGTATTGAAGAG YPTS_1343 1497067 - 1499742 + | DNA gyrase, A subunit TERM 1595 1499756 - 1499779 + G 74 -11 -2.81547 | overlap 1499754 AATAATGTTGCTCTG GCAGGTGCGG TTTA TTGCACCTGC TCATTCATCTGCGGC TERM 1596 1499878 - 1499829 - g 82 -5.2 -5.14563 | opp_overlap 1499831, overlap 1499831 CGTGTCATTAAAAAA CAGCCAGC-CAGTGAGCTTAAC GCCCATCA GTTAAGCA-ACTGAGCTGGCTT TTTTATCGGTTATCG TERM 1597 1499831 - 1499876 + G 93 -7.8 -5.3236 | opp_overlap 1499829 1499831 TGTCATTAAAAAACA GCCAGC-CAGTGAGCTTAAC GCCCATCA GTTAAGCA-ACTGAGCTGGC TTTTTTATCGGTTAT TERM 1598 1499876 - 1499831 - g 75 -7.8 -4.20707 | opp_overlap 1499831, overlap 1499829 TGTCATTAAAAAACA GCCAGC-CAGTGAGCTTAAC GCCCATCA GTTAAGCA-ACTGAGCTGGC TTTTTTATCGGTTAT YPTS_1344 1499745 - 1499870 + | hypothetical protein TERM 1599 1500101 - 1500089 - g 95 -3.3 -5.95166 | CTTAACGAAAAAAAA GCCGA TAT TCGTC AGGAATATAACAACA TERM 1600 1500230 - 1500205 - g 81 -6.1 -4.96848 | opp_overlap 1500217 1500220, overlap 1500207 TCGGCTAGATAAAAA CGCCAGTGACA CTGA TGCCACTAGTG GCATGGTTATGAATA TERM 1601 1500645 - 1500657 + G 75 -3.3 -5.09762 | overlap 1500631 GCTTTGAGCAGAGTG TCCGC TTG GAGGA TTTTATTTCTTCCCG YPTS_1345 1499930 - 1502803 + | integral membrane sensor hybrid histidine kinase TERM 1602 1502847 - 1502821 - T 100 -15.2 -3.83844 | TTCATTAATTAATAA GCCCAGTATTGC AGA GCAAAACTGGGC TTGAGAGTCGAGCGG YPTS_1346 1503524 - 1502871 - | two component LuxR family transcriptional regulator YPTS_1347 1506220 - 1503527 - | multi-sensor signal transduction histidine kinase TERM 1603 1503579 - 1503567 - G 74 -2.7 -5.14563 | opp_overlap 1503544 CTGGTGATGAAAAAA TCAAT CTG ACTGA TGCTATTTTCGATCT TERM 1604 1503806 - 1503818 + g 75 -7.7 -4.14193 | ACTGGTTTTTAGTTG CCTCT CAT AGAGG TTTATATCATCTTCT TERM 1605 1505050 - 1505064 + g 80 -4.2 -5.31456 | overlap 1505051 CACCGTGGTGCTGCT CTGCCA TAG TGGCAA TTTTTTGTAGATTCA TERM 1606 1505447 - 1505459 + g 71 -10.5 -2.75183 | overlap 1505444 TGCCGCAATATCTTC GGGGG TAG CCCCC TCATTGAGTGGCACT YPTS_1348 1507398 - 1506244 - | major facilitator transporter TERM 1607 1508118 - 1508104 - H 100 -11.4 -5.626 | GACCGGAGAAAAAAA CCGGTC AGA GACCGG TCGTAACATTAACGA YPTS_1349 1508171 - 1508305 + | hypothetical protein YPTS_1350 1508502 - 1509617 + | porin TERM 1608 1509645 - 1509670 + T 100 -15.5 -3.80733 | opp_overlap 1509649, overlap 1509649 GCGTGAGTCCTGAGA GAAACGCGGTC ATTC GGCCGCGTTTC TTATTGTGAGCTACG TERM 1609 1509649 - 1509666 + T 100 -10.5 -4.51812 | opp_overlap 1509649, overlap 1509645 GAGTCCTGAGAGAAA CGCGGTC ATTC GGCCGCG TTTCTTATTGTGAGC TERM 1610 1509666 - 1509649 - T 77 -8.3 -4.0371 | opp_overlap 1509649 1509645 GAGTCCTGAGAGAAA CGCGGTC ATTC GGCCGCG TTTCTTATTGTGAGC TERM 1611 1510178 - 1510202 + T 100 -13 -5.15526 | opp_overlap 1510178 GGCACCAATTAAAAA CCCGTTATCT GAATA AGATAACGGG TTTTTGCTTTTCTCT TERM 1612 1510202 - 1510178 - T 100 -13 -4.90266 | opp_overlap 1510178 GGCACCAATTAAAAA CCCGTTATCT GAATA AGATAACGGG TTTTTGCTTTTCTCT TERM 1613 1510254 - 1510266 + T 77 -10.5 -3.22858 | overlap 1510253 1510263 GCTTATCCAGCATGT GCCCG GTG CGGGC TATTGCTCTCATTAC YPTS_1351 1511523 - 1510357 - | beta-lactamase TERM 1614 1510499 - 1510511 + g 80 -4.7 -5.1101 | opp_overlap 1510496 1510499 TAAGTAATAAATCCA CCGCC ACC GCCGG TTTTTTGCATAATGC TERM 1615 1511015 - 1511033 + g 71 -3.1 -5.00616 | gap 1 CGATTATCTTTGGTC GGCCAGGT AAAC ACC-GGTC TTTTTTGCGGGCCGC TERM 1616 1511779 - 1511745 - R 93 -13.6 -2.65388 | opp_overlap 1511751 1511774, overlap 1511751 CAGGGAAGGGAGAAG CAAAAACCGCACTGGC GGG ACCGGTGCGGTTTGTG GTCACGACCAGAAAT TERM 1617 1511751 - 1511773 + r 100 -12.7 -3.96148 | opp_overlap 1511745 1511751 AGGGAGAAGCAAAAA CCGCACTGG CGGGA CCGGTGCGG TTTGTGGTCACGACC TERM 1618 1511773 - 1511751 - R 100 -11.2 -4.93968 | opp_overlap 1511751, overlap 1511745 AGGGAGAAGCAAAAA CCGCACTGGC GGG ACCGGTGCGG TTTGTGGTCACGACC YPTS_1352 1513324 - 1511798 - | putative transport protein TERM 1619 1511935 - 1511945 + g 80 -6.8 -4.7373 | overlap 1511906 CGGGGATATCTGCCA TGGC ACC GCCA TTTTTAATACGCTCA TERM 1620 1513477 - 1513452 - H 76 -10.7 -2.71325 | opp_overlap 1513452, overlap 1513449 1513468 CGACGTAGAAAGCCA TGTATATCAAT AAAA ATTGATATACA TCAATTGAGAGGAAG TERM 1621 1513452 - 1513477 + H 76 -10.7 -2.52464 | opp_overlap 1513452 1513449 1513468 CGACGTAGAAAGCCA TGTATATCAAT AAAA ATTGATATACA TCAATTGAGAGGAAG TERM 1622 1513481 - 1513468 - H 77 -3.9 -5.16841 | opp_overlap 1513452, overlap 1513452 1513449 GTATATCAATAAAAA TTGAT ATAC ATCAA TTGAGAGGAAGACGC YPTS_1353 1513740 - 1514729 + | beta-lactamase domain-containing protein YPTS_1354 1516590 - 1514803 - | methyl-accepting chemotaxis sensory transducer with Cache sensor YPTS_1355 1517977 - 1517042 - | peptidase A26 omptin TERM 1623 1518072 - 1518062 - R 84 -2.6 -5.66989 | opp_overlap 1518062, overlap 1518053 TAAAGATTAAAAAAA TTTT AAA AAAA TTAATTTCTCATTGA YPTS_1356 1518391 - 1518149 - | DinI family protein YPTS_1357 1519319 - 1518597 - | XRE family transcriptional regulator YPTS_1358 1519422 - 1519282 - | hypothetical protein YPTS_1359 1519593 - 1520072 + | antitermination Q family protein TERM 1624 1520160 - 1520148 - f 74 -4.9 -4.8743 | opp_overlap 1520152, overlap 1520140 TCTAAAATAAATAAA GTTAT TTA ATAAC ATTAAGTTAAATTGA YPTS_1360 1520283 - 1521587 + | type III effector Hrp-dependent outers YPTS_1361 1521584 - 1522315 + | class II aldolase/adducin family protein YPTS_1362 1522318 - 1523130 + | DeoR family transcriptional regulator YPTS_1363 1523106 - 1523900 + | xylose isomerase domain-containing protein TERM 1625 1523929 - 1523955 + F 100 -8.1 -5.30189 | gap 1, overlap 1523934 TGTATAGCTAACTGT GATAGGCCACAC TTCG GTGTGGC-TGTC TTTTTTCATCTTATA TERM 1626 1523934 - 1523951 + F 90 -11.3 -3.7035 | overlap 1523929 AGCTAACTGTGATAG GCCACAC TTCG GTGTGGC TGTCTTTTTTCATCT TERM 1627 1524042 - 1524080 + F 83 -11.8 -2.89564 | opp_overlap 1524043 1524046 1524052, overlap 1524046 1524053 TTACATACTGAGTAA ACAATAAGAAGCCCCAGC ATC GCCGGGGTTTTTTATTGC TGTCTGAAATAGGCG TERM 1628 1524079 - 1524043 - f 100 -13.1 -3.78736 | opp_overlap 1524042 1524046 1524053, overlap 1524046 1524052 TACATACTGAGTAAA CAATAAGAAGCCCCAGC ATC GCCGGGGTTTTTTATTG CTGTCTGAAATAGGC TERM 1629 1524076 - 1524046 - f 80 -9 -4.01902 | opp_overlap 1524042 1524046 1524053, overlap 1524043 1524052 ATACTGAGTAAACAA TAAGAAGCCCCAGC ATC GCCGGGGTTTTTTA TTGCTGTCTGAAATA TERM 1630 1524046 - 1524076 + F 81 -11.2 -3.32498 | opp_overlap 1524046 1524043 1524052, overlap 1524042 1524053 ATACTGAGTAAACAA TAAGAAGCCCCAGC ATC GCCGGGGTTTTTTA TTGCTGTCTGAAATA TERM 1631 1524070 - 1524052 - f 76 -8 -4.16937 | opp_overlap 1524046 1524042 1524053, overlap 1524046 1524043 AGTAAACAATAAGAA GCCCCAGC ATC GCCGGGGT TTTTTATTGCTGTCT TERM 1632 1524053 - 1524069 + F 100 -9.3 -5.5353 | opp_overlap 1524052 1524046 1524043, overlap 1524046 1524042 GTAAACAATAAGAAG CCCCAGC ATC GCCGGGG TTTTTTATTGCTGTC YPTS_1364 1524140 - 1524430 + | putative bacteriophage protein YPTS_1365 1524476 - 1525093 + | hypothetical protein YPTS_1366 1525098 - 1525292 + | putative bacteriophage protein TERM 1633 1525620 - 1525634 + G 73 -7.8 -4.06633 | CCATCAATACGGCGG CATCGG AGA CCGGTG TTATTTCACTTTATA YPTS_1367 1525289 - 1526797 + | Mu tail sheath family protein TERM 1634 1526846 - 1526836 - g 71 -8.2 -3.64103 | GAGCGATACTTCAAA CCGC CTG GCGG GTACGGCGTATGTCA YPTS_1368 1526819 - 1527187 + | hypothetical protein TERM 1635 1527272 - 1527254 - g 91 -13.2 -3.38316 | TCACGACGCAAGCAA GACCACCT ATG AGGTGGTC GAACTCAGCGAACCT YPTS_1369 1527189 - 1527488 + | putative bacteriophage protein YPTS_1370 1527609 - 1529102 + | putative bacteriophage coat protein TERM 1636 1529233 - 1529207 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 1529216, overlap 1529208 1529223 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1637 1529234 - 1529208 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 1529216, overlap 1529207 1529223 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1638 1529314 - 1529327 + F 100 -9.5 -5.4387 | GTCAATAACCTCGAA CCCGC TCCG GCGGG TTTTTTACTTTCTGT YPTS_1371 1529369 - 1530775 + | DNA circulation family protein YPTS_1372 1530772 - 1531827 + | Mu P family protein TERM 1639 1531908 - 1531919 + G 71 -7.2 -4.07568 | overlap 1531905 GCTGCTGGGGATCGG GCGG GTGA CCGC TTTTGACGACAGCAA YPTS_1373 1531843 - 1532439 + | phage baseplate assembly protein V YPTS_1374 1532436 - 1532891 + | GP46 family protein YPTS_1375 1532895 - 1534031 + | baseplate J family protein YPTS_1376 1534028 - 1534630 + | putative bacteriophage protein GP48 TERM 1640 1534799 - 1534771 - g 70 -9.5 -3.25942 | opp_overlap 1534758 1534798, overlap 1534757 1534782 ACGCGCCGACAGTAA CGGCGAATTTACC GAC GGCAACGTCGCCG GTGGCGTTCCACCCA YPTS_1377 1534727 - 1535506 + | tail collar domain-containing protein TERM 1641 1535623 - 1535599 - f 75 -7.2 -4.33621 | gap 1, opp_overlap 1535603, overlap 1535601 1535603 CAGTGAATTAATAAA TATACCGGGCA ATTA CGCCCGGT-TA GCTATCTACAAAGAA TERM 1642 1535622 - 1535601 - f 72 -7.9 -3.7642 | opp_overlap 1535603, overlap 1535599 1535603 GTGAATTAATAAATA TACCGGGCA ATTA CGCCCGGTT AGCTATCTACAAAGA TERM 1643 1535620 - 1535603 - f 80 -10.5 -3.45532 | opp_overlap 1535603, overlap 1535601 1535599 GAATTAATAAATATA CCGGGCA ATTA CGCCCGG TTAGCTATCTACAAA TERM 1644 1535603 - 1535620 + F 74 -9.8 -3.15999 | opp_overlap 1535601 1535599 1535603 GAATTAATAAATATA CCGGGC AATTAC GCCCGG TTAGCTATCTACAAA YPTS_1378 1535804 - 1536544 + | RpiR family transcriptional regulator YPTS_1379 1536713 - 1536838 + | hypothetical protein TERM 1645 1538194 - 1538181 - g 77 -4.5 -4.84359 | TTATGTCGATAAAAA CGATG ATGG CACCG GTACAATGGCGCGTT YPTS_1380 1536835 - 1538271 + | glycoside hydrolase family protein TERM 1646 1538317 - 1538338 + T 100 -12.3 -4.8143 | opp_overlap 1538316 1538315 TTGAATTCAAGAAGG CCGTTCACC CTTT GGTGAGCGG TTTTTACCTTGTTAC YPTS_1381 1538759 - 1538397 - | hypothetical protein TERM 1647 1538521 - 1538506 - G 72 -6.2 -4.34402 | opp_overlap 1538505 TCTTTCATATCAAAA GGATAA CCTA TTATCC CAGTTTTTAATTTAA YPTS_1382 1539188 - 1539096 - | hypothetical protein YPTS_1383 1539629 - 1539345 - | colicin D YPTS_1384 1539915 - 1539658 - | hypothetical protein YPTS_1385 1540993 - 1539917 - | hypothetical protein YPTS_1386 1541391 - 1541170 - | hypothetical protein TERM 1648 1541249 - 1541212 - G 83 -8.6 -4.5464 | overlap 1541213 TATATATAAGCAAAA GTATGTTGGTTCAGAT TGAACT AACTGAACCAACATAA AAACCTCGCATGTGA TERM 1649 1541248 - 1541213 - G 85 -12.1 -3.317 | overlap 1541212 ATATATAAGCAAAAG TATGTTGGTTCAGAT TGAACT AACTGAACCAACATA AAAACCTCGCATGTG TERM 1650 1541681 - 1541697 + r 72 -9.4 -3.17051 | overlap 1541679 CATTGAAATTATGCT GTGCCG CATCC CGGCAC TCTTGCTCATCCCAA TERM 1651 1541777 - 1541744 - R 100 -13.3 -3.91144 | opp_overlap 1541742 1541752, overlap 1541747 1541752 GCCACACTCCACAAA CGACAAAACCAACCC GAAT GGATTGGTTTTGTTG AGGTATTTGGTCGGC TERM 1652 1541774 - 1541747 - R 100 -13.6 -3.02186 | opp_overlap 1541742 1541752, overlap 1541744 1541752 ACACTCCACAAACGA CAAAACCAACCC GAAT GGATTGGTTTTG TTGAGGTATTTGGTC TERM 1653 1541752 - 1541769 + r 73 -5.5 -4.6759 | opp_overlap 1541747 1541744 1541752, overlap 1541742 CCACAAACGACAAAA CCAACCC GAAT GGATTGG TTTTGTTGAGGTATT TERM 1654 1541769 - 1541752 - R 86 -7.7 -4.64846 | opp_overlap 1541752 1541742, overlap 1541747 1541744 CCACAAACGACAAAA CCAACCC GAAT GGATTGG TTTTGTTGAGGTATT YPTS_1388 1543762 - 1541966 - | sulfatase YPTS_1389 1544017 - 1543790 - | hypothetical protein YPTS_1390 1544195 - 1545199 + | 37 kDa nucleoid-associated protein TERM 1655 1545225 - 1545254 + T 100 -18.1 -3.57144 | opp_overlap 1545225 1545232, overlap 1545232 TGCGTATTTAGCCAA TAAAAAACGCCGC ATCA GCGGCGTTTTTTA TTTCGGCGTCCCGAA TERM 1656 1545254 - 1545225 - T 100 -18.1 -3.07816 | opp_overlap 1545225 1545232, overlap 1545232 TGCGTATTTAGCCAA TAAAAAACGCCGC ATCA GCGGCGTTTTTTA TTTCGGCGTCCCGAA TERM 1657 1545247 - 1545232 - T 100 -11.8 -5.4833 | opp_overlap 1545225 1545232, overlap 1545225 TTAGCCAATAAAAAA CGCCGC ATCA GCGGCG TTTTTTATTTCGGCG TERM 1658 1545232 - 1545247 + T 100 -11.8 -5.63517 | opp_overlap 1545232 1545225, overlap 1545225 TTAGCCAATAAAAAA CGCCGC ATCA GCGGCG TTTTTTATTTCGGCG YPTS_1391 1545571 - 1545287 - | ribosomal protein L25 YPTS_1392 1547490 - 1545733 - | type III restriction protein res subunit TERM 1659 1547180 - 1547161 - G 75 -5.8 -4.59027 | gap 1, overlap 1547163 AATCAGCAGAGAAAA TG-CGCTAT CAA ATAGCGGCA GATTACGGGCCACCG TERM 1660 1547448 - 1547438 - G 71 -6.8 -4.17048 | TGGCGTCGAAAATAA GCCA CCG TGGC ATCGACCGCTTCTCG YPTS_1393 1548024 - 1548731 + | pseudouridine synthase TERM 1661 1549771 - 1549788 + G 71 -9.1 -3.44622 | GTGGTTTGTGTCGCT GGCCTAG GATT CTGGGCC TTAGTTCTGGGCGTA YPTS_1394 1548865 - 1550064 + | Bcr/CflA subfamily drug resistance transporter TERM 1662 1550811 - 1550796 - f 95 -7.6 -5.00412 | AAATATAACGAAAAA TGGGAT CTGA ATCCCA AATCTACAGCTTCTG YPTS_1395 1551067 - 1551411 + | hypothetical protein TERM 1663 1551427 - 1551448 + T 82 -5.8 -4.9792 | TACTTTTTAGCTGTT TGTCCGTG TGCTAT CGCGGGCA TTTTTGTCTAGGCTA YPTS_1396 1553064 - 1551472 - | ABC transporter related TERM 1664 1552131 - 1552151 + g 75 -6.1 -4.58663 | opp_overlap 1552114 CCAGACTTTCGCCGG GCTTCAGGT CAA AACTGAGGC TTTTTAGCGCATAGT YPTS_1397 1554094 - 1553066 - | binding-protein-dependent transport systems inner membrane component YPTS_1398 1555194 - 1554094 - | binding-protein-dependent transport systems inner membrane component TERM 1665 1554698 - 1554717 + g 100 -10.7 -5.60993 | opp_overlap 1554697 CTCCAGGTATCGAAG GCGGTGC CATTGC GCACCGC TTTTTTTATCCCCAG YPTS_1399 1557012 - 1555204 - | extracellular solute-binding protein TERM 1666 1556399 - 1556415 + g 72 -10.9 -2.7362 | overlap 1556398 GCGACTGGAGGGGTA CTGAGTG GGT CACTCAG CTTATGATCTTTCCA YPTS_1400 1558674 - 1557094 - | diguanylate phosphodiesterase TERM 1667 1559197 - 1559213 + r 70 -8 -3.65084 | opp_overlap 1559197 TGAGCCAATAAAAAA CGCTGT CATAA ACAGCG TTTCAACGTTTGGTT TERM 1668 1559213 - 1559197 - R 100 -8.7 -5.4833 | opp_overlap 1559197 TGAGCCAATAAAAAA CGCTGTC ATA AACAGCG TTTCAACGTTTGGTT YPTS_1401 1559844 - 1559260 - | NLP/P60 protein TERM 1669 1559456 - 1559466 + g 71 -6.8 -4.1552 | opp_overlap 1559456 CCTGGACGTAATTTA GTCC GCT GGAC TTTCTTGCCGAGATC TERM 1670 1559674 - 1559726 + g 76 -9.1 -3.82865 | opp_overlap 1559672 CGCTTCGAATTCATC CTGAGAGGCTTGCAGTAAAAGCCCA TCT TTGTCATTAACTGCACGCATCTCAG TTTGCGTATTATTTA YPTS_1402 1560987 - 1560286 - | phosphoesterase PA-phosphatase related TERM 1671 1561055 - 1561036 - R 89 -3.5 -5.62288 | opp_overlap 1561036 1561054 GGAAGAAAATAAAAA CGGGG AGACATCATA CCCCG TTACGTAAACGAATT YPTS_1403 1562029 - 1561046 - | cobalamin synthesis protein P47K TERM 1672 1561498 - 1561517 + g 73 -4.9 -4.68705 | overlap 1561508 1561511 ATTCGCTATGATACA GCGGCCG CGATAA TGGCTGC TTTTGTTGCCATTGT YPTS_1404 1562345 - 1562671 + | hypothetical protein TERM 1673 1562694 - 1562722 + F 100 -15.5 -3.89524 | CAACATGTTTGGGCA TCACGGTTTATCG ACG TGATAAACCGTGA TTTATCACCTGAAGT YPTS_1405 1562837 - 1563580 + | GntR domain-containing protein TERM 1674 1563715 - 1563681 - T 89 -11.6 -3.4314 | opp_overlap 1563679 1563682, overlap 1563679 1563682 TAAACGCCAACAATA CCGATGAGCTGAAT AGCCTTG ATTCAGCTCATCGT CGTGTGTCTTAAGCC TERM 1675 1563682 - 1563714 + T 100 -15.1 -2.75975 | opp_overlap 1563681 1563679 1563682, overlap 1563679 AAACGCCAACAATAC CGATGAGCTGAAT AGCCTTG ATTCAGCTCATCG TCGTGTGTCTTAAGC TERM 1676 1563714 - 1563682 - T 100 -15.1 -2.65161 | opp_overlap 1563682 1563679, overlap 1563681 1563679 AAACGCCAACAATAC CGATGAGCTGAAT AGCCTTG ATTCAGCTCATCG TCGTGTGTCTTAAGC YPTS_1406 1565196 - 1563724 - | mannitol dehydrogenase domain-containing protein TERM 1677 1564446 - 1564429 - G 71 -6.9 -4.2123 | GACCCACTGAATAAA GGGTTCG CAGG CGATCCC ACAAGAGTCTGCGAC TERM 1678 1565462 - 1565450 - H 75 -3.4 -5.23292 | opp_overlap 1565450 TGACAGAAAATAAAA TTGG TAAGT CCAA TATTGATAATATTCG TERM 1679 1565732 - 1565750 + H 71 -3.2 -5.00467 | opp_overlap 1565727, overlap 1565748 CAGAAAAAGGCGGCT TTAACC GTTAGCG GGTTAA TTTTATTATTGTTGC TERM 1680 1566728 - 1566716 - g 86 -7.7 -4.83759 | AAGGAAATCCAAAAA CCTTC CAT GAAGG GGGGCATTTGCAAGG YPTS_1407 1565788 - 1566981 + | mannonate dehydratase TERM 1681 1567037 - 1567007 - T 100 -14 -3.69482 | opp_overlap 1567016, overlap 1567008 TCAGTGAAGAGATAA CCGTTAAGGGCCGG TTT CCGGCTCTTAACGT AGAGAGACCCAATAG TERM 1682 1567036 - 1567008 - T 100 -17.5 -2.81207 | opp_overlap 1567016, overlap 1567007 CAGTGAAGAGATAAC CGTTAAGGGCCGG TTT CCGGCTCTTAACG TAGAGAGACCCAATA TERM 1683 1567016 - 1567028 + T 76 -10.5 -3.05844 | opp_overlap 1567008 1567007 AGATAACCGTTAAGG GCCGG TTT CCGGC TCTTAACGTAGAGAG YPTS_1408 1567693 - 1567121 - | elongation factor P-like protein YeiP YPTS_1409 1569041 - 1567797 - | aromatic amino acid transporter TERM 1684 1569055 - 1569074 + H 76 -7.8 -4.22375 | opp_overlap 1569059 ATCTATTGCTCCTGA GATACCCG GCTG CGGGTAAC TTCTTTATATTAAGT YPTS_1410 1569471 - 1569725 + | hypothetical protein YPTS_1411 1570609 - 1569794 - | short-chain dehydrogenase/reductase SDR TERM 1685 1570454 - 1570432 - G 72 -11.3 -2.62613 | overlap 1570431 1570429 GTTCACGTGAAATAT CGGTGCAGA TCACT TCCGCACCG GTTGCCGCCAGCCCT TERM 1686 1570660 - 1570628 - R 76 -11.1 -2.52464 | opp_overlap 1570655 CTTCTCCTTAAGTCA GTGGGCAGCGCAGTG GCT CACCGCGCAGTCCCC GTAGGGCCTCTTCAG YPTS_1412 1571570 - 1570620 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YPTS_1413 1572724 - 1571582 - | hypothetical protein YPTS_1414 1572811 - 1572954 + | hypothetical protein TERM 1687 1573268 - 1573278 + G 77 -8.2 -4.2828 | overlap 1573267 GAGGCGGTTGCTGCG GCGC GGC GCGC TTTTCCTGCCTGGGC YPTS_1415 1573076 - 1574572 + | aldehyde dehydrogenase TERM 1688 1575101 - 1575116 + G 71 -6.8 -4.24204 | gap 1, overlap 1575103 ACTGAAGTTTCGGAT GCCTCGG GGA CCG-GGC TTTTCGATGTACGTG TERM 1689 1576029 - 1576043 + G 70 -10 -3.14132 | overlap 1576025 1576026 ACCCCCCCAATCCCG CAACCG CGG CGGTTG TTGCTGAGGCCCAAC YPTS_1416 1574576 - 1576129 + | xylulokinase YPTS_1419 1577044 - 1578060 + | ABC transporter, periplasmic sugar-binding protein YPTS_1420 1578114 - 1578212 + | hypothetical protein TERM 1690 1579236 - 1579223 - gf 76 -8.1 -4.08945 | opp_overlap 1579223 AGGATCTGCCGAAAA GGCCA CGCA TGGCC TTCAATATTGGCATT YPTS_1421 1578169 - 1579743 + | ABC transporter related TERM 1691 1580490 - 1580504 + G 75 -3.5 -5.08601 | gap 1 ATTTCAGGGTTCCTT GCC-GC ACTT GCTGGC TTTTTGTTGGCATCG TERM 1692 1580570 - 1580601 + G 78 -5.8 -4.72272 | gap 1 CTACTTGCTCTACGC CATTGCCGC-GCCCA TTA TCGGCGGCGTCAGTG TTTTTGGTGGGCACG YPTS_1422 1579779 - 1580777 + | inner-membrane translocator YPTS_1423 1581325 - 1580870 - | NUDIX hydrolase YPTS_1424 1581587 - 1582720 + | HPr family phosphocarrier protein TERM 1693 1582834 - 1582814 - g 77 -6.8 -4.59853 | TCAATCTGGTAAAAA CCGCCG GTCTGCATG CGGCGG GTAAAGGGATCAACG YPTS_1425 1582717 - 1583655 + | 1-phosphofructokinase YPTS_1426 1583670 - 1585370 + | PTS system, fructose subfamily, IIC subunit TERM 1694 1585429 - 1585454 + F 100 -13.4 -5.30686 | opp_overlap 1585429 GTCAGCAGTCTGAAA TGCCAGTCAG TTAATT CTGACTGGCA TTTTTTATGGGTGTT TERM 1695 1585454 - 1585429 - f 100 -13.4 -3.58343 | opp_overlap 1585429 GTCAGCAGTCTGAAA TGCCAGTCAG TTAATT CTGACTGGCA TTTTTTATGGGTGTT TERM 1696 1585556 - 1585533 - f 71 -8.4 -3.53224 | opp_overlap 1585533 1585548, overlap 1585548 TATTTTTTTGTTAAA TTATTAAGAT AATA ATCTTAATAA GACTTAATCTTGTGC TERM 1697 1586126 - 1586147 + G 80 -6.7 -4.77036 | CTTTTTTATCGCTAT TATGATGGT CATC ATCATCATA TTTTTCATGGTAGGA YPTS_1427 1585695 - 1586339 + | transcriptional regulator, CadC TERM 1698 1586726 - 1586698 - g 80 -4.5 -5.08831 | opp_overlap 1586697, overlap 1586686 1586700 TAATAAAAAAAATAA CGTTGTCACCTTT TTT AATGGTGACAGAG GCTTTATTGATGTCA YPTS_1428 1586336 - 1586824 + | hypothetical protein YPTS_1429 1587369 - 1587845 + | pH 6 antigen precursor (antigen 4) (adhesin) TERM 1699 1587854 - 1587895 + F 89 -6.7 -5.31855 | opp_overlap 1587857 1587858 1587860, overlap 1587857 1587858 ATTTTAAATAACGAG TAATCATAGAACATGATGG CTTG CTGTCATGTTCTATGTATG TTTTTGTTATTGATG TERM 1700 1587857 - 1587893 + F 86 -9 -4.27297 | gap 1, opp_overlap 1587857 1587858 1587860, overlap 1587854 1587858 TTAAATAACGAGTAA T-CATAGAACATGATGG CTTG CTGTCATGTTCTATGTA TGTTTTTGTTATTGA TERM 1701 1587858 - 1587891 + F 100 -14.1 -3.70836 | opp_overlap 1587858 1587857 1587860, overlap 1587857 1587854 TAAATAACGAGTAAT CATAGAACATGATGG CTTG CTGTCATGTTCTATG TATGTTTTTGTTATT TERM 1702 1587891 - 1587858 - f 71 -9.7 -2.60492 | opp_overlap 1587857 1587854 1587858, overlap 1587857 1587860 TAAATAACGAGTAAT CATAGAACATGATGG CTTG CTGTCATGTTCTATG TATGTTTTTGTTATT TERM 1703 1587911 - 1587945 + F 95 -14 -2.84192 | opp_overlap 1587935 TTTTTGTTATTGATG TTTTATTGTGAGTTTT TTT AAAATTCACAATAAAA TATCATGATAATGTG TERM 1704 1588673 - 1588655 - g 91 -3.8 -5.68438 | GGATGAAATAAAAAA TGGCAG CTATGTT CCGCCA TTCTCTTCTAGGGAT TERM 1705 1588675 - 1588687 + G 74 -4.1 -4.90079 | GCTATGTTCCGCCAT TCTCT TCT AGGGA TTTTATTATTCCGGT YPTS_1430 1587972 - 1588793 + | Pili assembly chaperone, N-terminal TERM 1706 1589565 - 1589577 + G 75 -3.3 -5.00884 | overlap 1589566 CCTTAGGGGAGAGTT ACACC CCA GGTGA TTTTTTCGACAGCAT YPTS_1431 1588877 - 1591348 + | fimbrial biogenesis outer membrane usher protein TERM 1707 1591401 - 1591425 + T 100 -11.4 -4.4715 | overlap 1591403 TCCCGTCAGGTTCAA TTCCCGCCAG GTTTA CTGGCGGGCA TTTTCTACGTTACAA TERM 1708 1591403 - 1591423 + T 93 -14 -2.56203 | overlap 1591401 CCGTCAGGTTCAATT CCCGCCAG GTTTA CTGGCGGG CATTTTCTACGTTAC YPTS_1432 1592292 - 1591435 - | apurinic endonuclease Apn1 TERM 1709 1591768 - 1591778 + g 88 -8.2 -4.67608 | opp_overlap 1591765 1591767 GGTATCAATACAGAC GCCG ACG CGGC TTTTATCTTCCACTC TERM 1710 1592392 - 1592369 - R 100 -13.2 -3.75332 | overlap 1592372 AGCGGTGAAGGGAAA TAAGGGCCGC GGAT ACGGCCCTTA AACGGTTTGTTTTAG TERM 1711 1592389 - 1592372 - R 89 -10.5 -4.0098 | overlap 1592369 GGTGAAGGGAAATAA GGGCCGC GGAT ACGGCCC TTAAACGGTTTGTTT YPTS_1433 1593544 - 1592456 - | hypothetical protein TERM 1712 1594928 - 1594961 + G 91 -13.3 -3.44334 | gap 1, opp_overlap 1594937, overlap 1594913 TCGCGGCGAGTGATT GCT-GATCAACTCGCC AGC GGTGAGTTGGTCGAGC TTAATATTCCTTTAC YPTS_1434 1594202 - 1595074 + | LysR family transcriptional regulator YPTS_1435 1595076 - 1595222 + | hypothetical protein TERM 1713 1596247 - 1596263 + G 73 -8.7 -3.79419 | opp_overlap 1596247 1596246 GCGGCAGTGATGAAT GCGGTTA TTT TGACCGC TGTTTTATCGGCGGG YPTS_1436 1595332 - 1596843 + | amino acid permease-associated region TERM 1714 1596893 - 1596874 - f 93 -12.2 -3.73072 | opp_overlap 1596874 AACGTGCGGATGAAA GGGCGATA ACGC TATCGCCC TTCTTTAGTGCCTAT TERM 1715 1596874 - 1596893 + F 100 -12.2 -4.01902 | opp_overlap 1596874 AACGTGCGGATGAAA GGGCGATA ACGC TATCGCCC TTCTTTAGTGCCTAT TERM 1716 1596923 - 1596962 + F 89 -11.6 -3.51924 | gap 1, opp_overlap 1596926 1596934 TAAATTAGCGGTAAC TGACGCCAATACCAGTACG AAA TGTGCTGGTATTAGCG-CA TTCTATCCGTGAACA TERM 1717 1596960 - 1596926 - f 91 -13.7 -2.53382 | opp_overlap 1596923, overlap 1596934 ATTAGCGGTAACTGA CGCCAATACCAGTAC GAAAT GTGCTGGTATTAGCG CATTCTATCCGTGAA TERM 1718 1597065 - 1597079 + F 70 -5.8 -4.26832 | overlap 1597060 TTATGGCAATCTTAT TGATAA GTA TTATCA TTTGCTTTATTGTTA YPTS_1437 1597105 - 1598274 + | periplasmic binding protein TERM 1719 1599392 - 1599406 + G 83 -6.4 -4.8622 | overlap 1599393 CGCACGCATGATTTT TGGTGA AGA TCACCG TTTTTACTTACCAGC YPTS_1438 1598493 - 1599575 + | transport system permease protein YPTS_1439 1599572 - 1600360 + | ABC transporter related TERM 1720 1601486 - 1601503 + G 72 -5.7 -4.3534 | opp_overlap 1601474, overlap 1601474 TAATTATGCGGTTAC TCATAAT GGTT ATTATGA TTTTGGTAATTCAAC TERM 1721 1601963 - 1601949 - g 71 -7 -4.07568 | opp_overlap 1601949 1601949, overlap 1601950 TCTGGTGGGGGAAAA GGCGGG CTT CCCGCA CTTATTCTGGGTAAT TERM 1722 1601962 - 1601950 - g 72 -10.5 -3.04398 | opp_overlap 1601949 1601949, overlap 1601949 CTGGTGGGGGAAAAG GCGGG CTT CCCGC ACTTATTCTGGGTAA TERM 1723 1602053 - 1602065 + G 71 -9.1 -3.494 | opp_overlap 1602050, overlap 1602050 GGAAGGGATGAACGC CAGCG TGA CGCTG TTCTATACCGACTTC YPTS_1440 1600620 - 1602617 + | TonB-dependent receptor YPTS_1441 1603385 - 1602765 - | glutathione S-transferase domain-containing protein YPTS_1442 1604180 - 1603530 - | HAD family hydrolase TERM 1724 1603806 - 1603794 - G 75 -10.5 -3.37622 | AACACCGATTGATAA CGCCG TAT CGGCG GCAAAGTGTTTCGCG YPTS_1443 1604582 - 1604704 + | hypothetical protein TERM 1725 1605089 - 1605058 - gf 72 -7.2 -3.99324 | CCCCATTACCACAAA TCGCAGGCGCACCC AGTT GGACACGGCTGCAA GGCCCGAACCAATGG TERM 1726 1605556 - 1605581 + GF 80 -10.5 -3.494 | TTTTAGGTGCGCGTT TGGATGCGGTG GTGC CACTGTATCCA TTATCTGCCGCATTG YPTS_1444 1604667 - 1605734 + | 2OG-Fe(II) oxygenase YPTS_1445 1605962 - 1606786 + | NLPA lipoprotein TERM 1727 1607246 - 1607262 + G 73 -10.1 -3.15013 | opp_overlap 1607245, overlap 1607245 1607243 GGATCGCCAGAGCAT TGGCGGC TAA GCCGTCA TATCTGTTATCAGAT TERM 1728 1607686 - 1607711 + G 71 -9.1 -3.54307 | gap 1 CGCTTGCACGTTGAT TTCAAC-CGTCC AGA GGGCGGGTTGAA TTTAGCCGAAGTGTT YPTS_1446 1606783 - 1607769 + | ABC transporter related TERM 1729 1607968 - 1607980 + G 73 -5.5 -4.55625 | CACTGGTCAATGTGG GGCGT TCA ATGCC TTTTGTGGTGTTACT YPTS_1447 1607766 - 1608437 + | binding-protein-dependent transport systems inner membrane component TERM 1730 1609515 - 1609541 + G 87 -10.9 -4.08887 | opp_overlap 1609510 GGGGTATAATTTGGT CGCATCGGC GACAGATGG GCCGATGCG TTTGATTTCCGTGGT YPTS_1448 1608772 - 1609977 + | peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 TERM 1731 1610147 - 1610128 - T 95 -9.3 -4.45693 | opp_overlap 1610128 TAACATAAATAGAAA GCGCGAT GTGACT ATCGCGC TTTTCAGGATGTTTC TERM 1732 1610128 - 1610147 + T 88 -10 -4.15543 | opp_overlap 1610128 TAACATAAATAGAAA GCGCGATG TGAC TATCGCGC TTTTCAGGATGTTTC TERM 1733 1610398 - 1610366 - T 90 -5.6 -5.54403 | gap 1, overlap 1610369 AAAAAAGAAGAAAAA TAACAGGCTGGCC GTGGAAGT GGCCAGCCTGG-A GCGGTTAATCAAACG TERM 1734 1610396 - 1610369 - T 100 -14.2 -4.74161 | overlap 1610366 AAAGAAGAAAAATAA CAGGCTGGCC GTGGAAGT GGCCAGCCTG GAGCGGTTAATCAAA YPTS_1449 1611736 - 1610435 - | serine transporter TERM 1735 1610619 - 1610633 + g 74 -10 -3.59979 | AATGTTTCGATCATC CCCAAG ATA CTTGGG TTTAAGGTCGCGACA TERM 1736 1610966 - 1610945 - G 79 -9.5 -3.82486 | opp_overlap 1610947 ACTGAAGACGAAGAA CATGACGGT GATA ACCATCATG ATGTGGGCAAAGCTC TERM 1737 1612676 - 1612663 - R 70 -3.9 -4.83615 | opp_overlap 1612663 GATTCTGTATAAAAA TAATC TATG GATTA TTTGCCAACATAGCG YPTS_1450 1613600 - 1612836 - | DeoR family transcriptional regulator TERM 1738 1613689 - 1613662 - R 88 -9.2 -4.36554 | CAGTACGATAATAAA TAAGCCCGGT AATTGTGG ACCGGGCTCA GACTACTGACAAAAT YPTS_1451 1614501 - 1613830 - | deoxyribose-phosphate aldolase TERM 1739 1614733 - 1614709 - R 100 -15.1 -2.91264 | GGGCGCATGGAGAGA TTGCCGGTCAG AGA CTAACCGGCAA GTGTGAAGCGAATAC YPTS_1452 1615364 - 1614759 - | phosphoesterase PA-phosphatase related YPTS_1453 1616179 - 1615364 - | hypothetical protein TERM 1740 1615470 - 1615482 + g 76 -9.1 -3.90744 | opp_overlap 1615470 TTATGAGTAAGAAAA TGCGC CCC GCGCA TTATTTGACCGAAAC TERM 1741 1615482 - 1615470 - G 100 -9.1 -4.73613 | opp_overlap 1615470 TTATGAGTAAGAAAA TGCGC CCC GCGCA TTATTTGACCGAAAC YPTS_1454 1618200 - 1616512 - | YidE/YbjL duplication TERM 1742 1618569 - 1618553 - R 100 -12.3 -4.70887 | opp_overlap 1618553 CCAGCAATAAAGAAA GGGTGTC TTG GACACCC TTATCGGATAAATGC TERM 1743 1618553 - 1618569 + r 95 -12.3 -3.33492 | opp_overlap 1618553 CCAGCAATAAAGAAA GGGTGTC TTG GACACCC TTATCGGATAAATGC YPTS_1455 1618873 - 1618610 - | GrxA family glutaredoxin TERM 1744 1618709 - 1618722 + g 80 -4.5 -5.03314 | overlap 1618699 1618698 TGGCACGGTTTCAAC CGGTT TACC GACCG TTTTTTCCAGATCAG YPTS_1456 1619336 - 1619650 + | hypothetical protein TERM 1745 1619699 - 1619673 - f 76 -9.5 -3.41013 | TAAGCACATTGAGAA TATCTAAGCCG AGGAA CGGCCCAGATA TCAAATTAGTCGGGA YPTS_1457 1619792 - 1620277 + | hypothetical protein TERM 1746 1620392 - 1620428 + F 71 -5 -4.74013 | gap 1, opp_overlap 1620394 1620396 1620398, overlap 1620395 1620396 AAACGTGTCCGAATA AAGACAGTGTGCCGCAG ATAT CAGCGGCACGCGG-CTA TTTTCTCTATTTACG TERM 1747 1620395 - 1620426 + F 74 -7.8 -3.97364 | opp_overlap 1620394 1620396 1620398, overlap 1620392 1620396 CGTGTCCGAATAAAG ACAGTGTGCCGCAG ATAT CAGCGGCACGCGGC TATTTTCTCTATTTA TERM 1748 1620425 - 1620396 - f 75 -9.1 -3.6761 | opp_overlap 1620396 1620395 1620392, overlap 1620394 1620398 GTGTCCGAATAAAGA CAGTGTGCCGCAG ATAT CAGCGGCACGCGG CTATTTTCTCTATTT TERM 1749 1620396 - 1620425 + F 83 -11.3 -2.96792 | opp_overlap 1620394 1620396 1620398, overlap 1620395 1620392 GTGTCCGAATAAAGA CAGTGTGCCGCAG ATAT CAGCGGCACGCGG CTATTTTCTCTATTT TERM 1750 1620423 - 1620398 - f 80 -10.3 -3.41738 | opp_overlap 1620396 1620395 1620392, overlap 1620396 1620394 GTCCGAATAAAGACA GTGTGCCGCAG ATAT CAGCGGCACGC GGCTATTTTCTCTAT TERM 1751 1621172 - 1621159 - g 70 -2.3 -4.98857 | opp_overlap 1621160, overlap 1621160 ACCGAATGAGAAAAA TCTCG ACCC CGAGT TACTGGCGCTGGTCA TERM 1752 1621451 - 1621461 + G 71 -6.8 -4.25458 | opp_overlap 1621446 GCCGATTACACGGGC TCCG CGA CGGA TTTATTGCTGAAGTT TERM 1753 1621909 - 1621894 - g 71 -10.4 -2.75577 | overlap 1621891 1621890 GGATCCGAAAATTGA CCGGGT CATC ACCCGG GCCTGGACAAAAGTT YPTS_1458 1620830 - 1621939 + | extracellular solute-binding protein YPTS_1459 1622110 - 1623243 + | spermidine/putrescine ABC transporter ATPase subunit YPTS_1460 1623268 - 1624233 + | binding-protein-dependent transport systems inner membrane component YPTS_1461 1624230 - 1625054 + | binding-protein-dependent transport systems inner membrane component TERM 1754 1625088 - 1625111 + F 100 -15.4 -3.30124 | overlap 1625091 GTCTTTCGTCTCCTT TAACGCCGCT TTAG AGCGGCGTTA TTGTGAGAGATAACA TERM 1755 1625091 - 1625108 + F 100 -12.7 -3.7941 | overlap 1625088 TTTCGTCTCCTTTAA CGCCGCT TTAG AGCGGCG TTATTGTGAGAGATA YPTS_1462 1625179 - 1625643 + | hypothetical protein TERM 1756 1625746 - 1625761 + G 82 -10.4 -3.83226 | opp_overlap 1625746 ATTGCGCACAGTATA CGGCAG GTCG CTGCCG TTCTTGTCAGTGGTT TERM 1757 1625761 - 1625746 - g 71 -10.4 -2.8547 | opp_overlap 1625746 ATTGCGCACAGTATA CGGCAG GTCG CTGCCG TTCTTGTCAGTGGTT TERM 1758 1626312 - 1626300 - g 74 -9.1 -3.67597 | opp_overlap 1626306, overlap 1626303 CCGCTGACCGAACAA CAGGC CCT GCCTG AGCGGTTTAATCAGG YPTS_1463 1625727 - 1626857 + | 23S rRNA (uracil-5-)-methyltransferase RumB YPTS_1464 1627715 - 1626984 - | cationic amino acid ABC transporter, periplasmic binding protein YPTS_1465 1627834 - 1627950 + | hypothetical protein TERM 1759 1628115 - 1628131 + G 71 -6.7 -4.21974 | overlap 1628123 1628124 CTGGTATTAGCATGG TGATAAT TTT ATTATCA TTTGTTAAATGATAA YPTS_1466 1627997 - 1628143 + | hypothetical protein YPTS_1467 1628484 - 1629410 + | band 7 protein TERM 1760 1629439 - 1629474 + F 100 -11.8 -5.35459 | opp_overlap 1629435 ATCAATAAATCTGAA GCCCACTTCCCCATGG AGAT TCGTGGTGTAGTGGGC TTTTTTATCATCTGT TERM 1761 1630735 - 1630722 - g 71 -4.5 -4.49556 | CCGCGATTAAACAAA CACGT TTTT ACGCG CTCTATCATGGCGGC TERM 1762 1630761 - 1630772 + G 71 -3 -4.89393 | GCGGCGTCCGCACGT TGTA CGAC TACA TTTTTGTGCAGTTTG YPTS_1468 1629824 - 1630915 + | periplasmic binding protein YPTS_1469 1630915 - 1631973 + | transport system permease protein TERM 1763 1632692 - 1632682 - g 71 -8.2 -3.70919 | TCGAAAGTGGAACAA GCCC TTT GGGC TATCGCTACTTATTG YPTS_1470 1631970 - 1632755 + | ABC transporter related YPTS_1471 1632743 - 1633540 + | hypothetical protein YPTS_1472 1633533 - 1634903 + | hypothetical protein YPTS_1473 1634900 - 1635745 + | hypothetical protein TERM 1764 1635908 - 1635874 - T 100 -12.2 -3.90112 | opp_overlap 1635873 1635872 GGGGCGTTAAGGAAA CCGGATCATCACGCAA TTT CTGGTTGATGATCCGG CGTTGTCGCATAAGG YPTS_1474 1636621 - 1635953 - | polar amino acid ABC transporter, inner membrane subunit YPTS_1475 1637337 - 1636621 - | polar amino acid ABC transporter, inner membrane subunit TERM 1765 1637318 - 1637283 - G 82 -10.4 -3.89346 | gap 1, opp_overlap 1637289, overlap 1637284 GTGCCAGTGCACAAA CGGCAAG-GCCGACGGT CAT ACCGGCGGCACTTGCTA AAGGTTGAAATTCAT TERM 1766 1637317 - 1637284 - G 78 -11.7 -2.93393 | gap 1, opp_overlap 1637289, overlap 1637283 TGCCAGTGCACAAAC GGCAAG-GCCGACGGT CAT ACCGGCGGCACTTGCT AAAGGTTGAAATTCA YPTS_1476 1638080 - 1637349 - | cationic amino acid ABC transporter, periplasmic binding protein YPTS_1477 1638880 - 1638101 - | ABC transporter related TERM 1767 1639093 - 1639065 - R 78 -8.8 -3.89354 | TTTGTAAATCAATAA GTACCGGGCCAC GGGAA GGAACCCGGTAC GAAAGATGTGTGGCC YPTS_1478 1639684 - 1639124 - | chorismate mutase YPTS_1479 1640429 - 1639854 - | putative lipoprotein YPTS_1480 1641533 - 1640526 - | NAD-dependent epimerase/dehydratase TERM 1768 1641340 - 1641350 + g 71 -6.8 -4.2349 | AGCGTATCGACATCC GCCA GCA TGGC TTTTGCCTGTGAGGA YPTS_1481 1643123 - 1641633 - | NAD-dependent epimerase/dehydratase YPTS_1482 1644139 - 1643120 - | aromatic amino acid beta-eliminating lyase/threonine aldolase YPTS_1483 1646209 - 1644488 - | thiamine pyrophosphate binding domain-containing protein TERM 1769 1644680 - 1644665 - G 71 -9 -3.58343 | opp_overlap 1644658 GCCAGGATGTGCAAA GGCACT TTCC AGTGCC GCATTTAATTCAGAG YPTS_1484 1647375 - 1646353 - | ferredoxin TERM 1770 1646509 - 1646493 - G 70 -7.9 -3.94409 | TACATGAGCCACAAA CACCCGC GCG GCAGGCG GCCATAACCGGTATT TERM 1771 1647474 - 1647440 - R 76 -10 -3.39288 | overlap 1647428 1647438 CAGCGTGCAATAATA GCCCGGTCAACGGC GAGAAAG GCGATTGACCAGGC AAGGTATAATTAACT YPTS_1485 1649141 - 1647489 - | hybrid cluster protein TERM 1772 1648947 - 1648935 - G 73 -3.3 -4.83615 | overlap 1648936 CAGCGTTGAGAAAAA TGCTC TGG GGGCA AAGCTGTCAATTTGG TERM 1773 1649311 - 1649299 - R 76 -6.9 -4.44548 | overlap 1649300 TATAGGGAAGGAAAA GCCCC CAG AGGGC GGGGGGGGGGCGACT YPTS_1486 1650239 - 1649343 - | protein of unknown function DUF340 membrane TERM 1774 1650917 - 1650903 - g 78 -5.7 -4.72201 | opp_overlap 1650903 GTGGATAAAAAATAA CGATG GGTTA CATCG TATCTACTATCGAGT TERM 1775 1651441 - 1651429 - g 83 -9.1 -4.42238 | TTATTGCAAGCAAAA GGCTC ACT GAGCC TCGATCCTCATGCCC TERM 1776 1652004 - 1652021 + G 77 -2.6 -5.24129 | CCTAACAATTTTGCC TGCACC CGATAT GGAGCA TTTTTTATACCGCGC YPTS_1487 1650592 - 1652259 + | hypothetical protein YPTS_1488 1652252 - 1652368 + | hypothetical protein YPTS_1489 1653343 - 1652396 - | hypothetical protein YPTS_1490 1653580 - 1654692 + | RND family efflux transporter MFP subunit TERM 1777 1654927 - 1654951 + G 70 -2 -4.83677 | overlap 1654928 AGTTGGATGACGATG CGTTGGCGGC ACTGC GCCGTGAACA TTTTGGTTTTATTTT YPTS_1491 1654692 - 1656641 + | ABC transporter related TERM 1778 1656819 - 1656786 - T 100 -11.2 -4.63007 | opp_overlap 1656792, overlap 1656792 TAGAAGTAGATAAAA TAAAAATGCCAGTC GTCATT GACTGGCATTTTGA ATCAAAGTACAGGTA TERM 1779 1656813 - 1656792 - T 100 -10.2 -5.58522 | opp_overlap 1656792, overlap 1656786 TAGATAAAATAAAAA TGCCAGTC GTCATT GACTGGCA TTTTGAATCAAAGTA TERM 1780 1656792 - 1656813 + T 93 -10.9 -4.18494 | opp_overlap 1656792 1656786 TAGATAAAATAAAAA TGCCAGTCG TCAT TGACTGGCA TTTTGAATCAAAGTA YPTS_1492 1657185 - 1656922 - | cold-shock DNA-binding domain-containing protein TERM 1781 1657152 - 1657138 - G 80 -8.6 -4.44046 | opp_overlap 1657137 1657138 CTCAGGGCAAATAAA GCCAAA ACC TTTGGC GTTGTTGAACCATTT TERM 1782 1657624 - 1657601 - g 78 -6 -4.73432 | gap 1, opp_overlap 1657601 1657605 TCAAAGATAAACAAA TCG-AGGCGCT TCA ACCGCCTTCGA TGTATAAAGTGATAC YPTS_1493 1657546 - 1657866 + | ATP-dependent Clp protease adaptor protein ClpS TERM 1783 1657873 - 1657861 - f 71 -4.8 -4.58395 | TGTACGCTGGAAAAA GCCT GATTA AGGC AATTATTGGGAGGTG YPTS_1494 1657892 - 1660168 + | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 1784 1660309 - 1660282 - T 100 -11.4 -4.7261 | gap 1, opp_overlap 1660282 ATCCAGTAAAATAAA GGGCGATA-GCTA AAA CAGCGTATCGCCC TTTTTATTGCCAACG TERM 1785 1660282 - 1660309 + T 100 -10.7 -5.06414 | gap 1, opp_overlap 1660282 ATCCAGTAAAATAAA GGGCGATA-GCT AAAAC AGCGTATCGCCC TTTTTATTGCCAACG TERM 1786 1660522 - 1660497 - T 100 -13.3 -4.36778 | overlap 1660491 AAAGATAACGCAAAA CGCCCTTGCCA TAAA TGGGAAGGGCG CCGGAGGGGGACTAC YPTS_1495 1660799 - 1660581 - | translation initiation factor IF-1 YPTS_1496 1661675 - 1660965 - | leucyl/phenylalanyl-tRNA--protein transferase YPTS_1497 1663618 - 1661894 - | cysteine ABC transporter permease/ATP-binding protein YPTS_1498 1665387 - 1663621 - | cysteine ABC transporter permease/ATP-binding protein TERM 1787 1663787 - 1663809 + g 74 -9 -3.72893 | AGCAGGGTAGACTGC GCACGGGAGG CCT CCTCCAGCGC TTTCATCACCAACTG TERM 1788 1664540 - 1664519 - G 79 -3.7 -5.19212 | gap 1, overlap 1664520 1664527 ATTAGCACCAAAAAA CCGGCA-AAC AGC GTTACGCCGA GGCCATAGCTACCAA TERM 1789 1665327 - 1665338 + g 88 -7.2 -5.04249 | overlap 1665318 GGCGGAGCCAACGTT GCGC GGGG GCGC TTTGTTTTTTCAGCC TERM 1790 1665788 - 1665764 - R 100 -9.2 -5.53079 | overlap 1665765 AAAACAGATAAAAAA GCGGGTGGCC CATGT AGCCACCCGT ATAGAACGAGGTGAA TERM 1791 1665787 - 1665765 - R 100 -12.7 -3.88187 | overlap 1665764 AAACAGATAAAAAAG CGGGTGGCC CATGT AGCCACCCG TATAGAACGAGGTGA YPTS_1499 1666808 - 1665846 - | thioredoxin reductase TERM 1792 1666895 - 1666875 - H 90 -4 -5.59357 | opp_overlap 1666875 ATGACATTAAAAAAA GCAAACAA AAATG TTGTTAGC AATTTTTTTGATAGG YPTS_1500 1667576 - 1668070 + | AsnC family transcriptional regulator TERM 1793 1668128 - 1668154 + F 100 -15.2 -3.14463 | opp_overlap 1668124, overlap 1668131 TTATTCATACAGTTT CAACGCCGGGGA GGC TTCTCGGCGTTG TTGCTCAGACCCGTT TERM 1794 1668131 - 1668151 + F 84 -11.1 -3.71848 | opp_overlap 1668124, overlap 1668128 TTCATACAGTTTCAA CGCCGGGGA GGC TTCTCGGCG TTGTTGCTCAGACCC TERM 1795 1668950 - 1668985 + G 71 -3.9 -4.77165 | TGGGGGCGGGTGTTG CGGCCTCATCGGCGT TAGCCC ATGGCGATGATGACG TTTTGTTCTCAGCCC TERM 1796 1669675 - 1669660 - g 70 -2.5 -4.87133 | opp_overlap 1669672, overlap 1669663 1669667 AGCTCCCAAATAAAA CAAGG TATTGG CCCTG AATTGCCACGGCCAA TERM 1797 1669694 - 1669663 - g 71 -5 -4.54026 | opp_overlap 1669672, overlap 1669660 1669667 TCCCAAATAAAACAA GGTATTGGCCCTGA ATTG CCACGGCCAAATCC GGTTCGTATTCCAAC TERM 1798 1669868 - 1669854 - g 70 -10 -3.15346 | opp_overlap 1669855 1669857 1669858, overlap 1669841 1669852 AACATCTGATGAAGA TGCTGC TTT GCAGCA GGCTATCTTGCGCAA TERM 1799 1669857 - 1669887 + G 71 -9.1 -3.57144 | gap 1, opp_overlap 1669854 1669852, overlap 1669855 1669858 ATCTGATGAAGATGC TGCTTTGCAGCAGG CTAT CTTGC-GCAAAGCG TTTGCCGATCAGCAA YPTS_1501 1668193 - 1672122 + | cell divisionFtsK/SpoIIIE YPTS_1502 1672312 - 1672920 + | outer membrane lipoprotein carrier protein LolA TERM 1800 1672978 - 1672995 + G 79 -10.5 -3.6715 | opp_overlap 1672976 TGAGTTTCAACCACT GGCCGCG CGTA TGCGGCC TTTGACGTTGGATCA TERM 1801 1673925 - 1673942 + G 74 -6.3 -4.44046 | CCGAAGGGGAGCGGG CGATTGC CCAG GCAATTG TTTATTTAGCCTGCG YPTS_1503 1672940 - 1674274 + | ATPase central domain-containing protein YPTS_1504 1674364 - 1674230 - | hypothetical protein TERM 1802 1674287 - 1674263 - G 85 -9.9 -4.39828 | opp_overlap 1674264 1674269 1674270 AATAGCCCGATAAAA CGCTACCGCTA GCT TTGCGGTTGCG GTAAGGTTAGCATTA TERM 1803 1674950 - 1674960 + G 71 -8.2 -3.71672 | opp_overlap 1674949 1674950 TTCTCTGGGCGAAAT GGCC GGT GGCC TTGATTTTGCTGCCG TERM 1804 1675026 - 1675014 - g 74 -9.1 -3.72576 | TTTGTGGTGATGAAA GGGCA AAT TGCCC GTATGCACCGTGCTC YPTS_1505 1674516 - 1675808 + | seryl-tRNA synthetase TERM 1805 1675867 - 1675889 + F 95 -4.9 -5.76633 | gap 1, opp_overlap 1675871, overlap 1675871 GTTATCTGCTATTTC G-AAAGCGTC TACG GGCGCTTTTC TTTTTTTGTGTATCC TERM 1806 1675871 - 1675884 + F 95 -5.9 -5.61277 | opp_overlap 1675871, overlap 1675867 TCTGCTATTTCGAAA GCGTC TACG GGCGC TTTTCTTTTTTTGTG YPTS_1506 1676055 - 1677203 + | major facilitator transporter TERM 1807 1677283 - 1677245 - T 83 -11.2 -3.43033 | gap 3, opp_overlap 1677248 1677248, overlap 1677248 TATCAATATATAAGA CAAC-GCCGCCA-GC-GGA TTCA TCCAGCATGGCGGCAGTTG TTAGGCCAAACCTAA TERM 1808 1677279 - 1677248 - T 81 -9.5 -3.83668 | gap 2, opp_overlap 1677248 1677248, overlap 1677245 CAATATATAAGACAA CGCCGCCA-GC-GGA TTCA TCCAGCATGGCGGCA GTTGTTAGGCCAAAC YPTS_1507 1678154 - 1677357 - | pyruvate formate-lyase activating enzyme YPTS_1508 1679078 - 1679752 + | glycosyl transferase family protein TERM 1809 1679836 - 1679816 - T 100 -13.3 -4.3255 | opp_overlap 1679816 CTCTGAATGAATAAA GGCCCCACA ATA TGTGGAGCC TTTCATGTTGTAACA TERM 1810 1679816 - 1679836 + T 90 -11.1 -3.97088 | opp_overlap 1679816 CTCTGAATGAATAAA GGCCCCACA ATA TGTGGAGCC TTTCATGTTGTAACA YPTS_1509 1682152 - 1679870 - | formate acetyltransferase TERM 1811 1681730 - 1681744 + g 77 -2.8 -5.1925 | overlap 1681738 GTTATGTGTTTTACG GTATTC GGT GAAGAC TTTTTTCAGTTGTGG YPTS_1510 1683065 - 1682208 - | formate/nitrite transporter YPTS_1511 1685509 - 1683743 - | hypothetical protein TERM 1812 1684876 - 1684889 + g 81 -8.1 -4.62069 | GCAAGCTGATGGACT CCGCA ATAA TGCGG TTTTTCACATAACGC YPTS_1512 1685658 - 1686695 + | L-asparaginase, type II TERM 1813 1686740 - 1686770 + F 100 -15.6 -3.57263 | opp_overlap 1686740 CTTTTTATTTCTAAA TGAATACTACGTCC ATA GGGCGTGGTATTCA TTTAGAAATAAAAAT TERM 1814 1686770 - 1686740 - f 83 -11.2 -3.57144 | opp_overlap 1686740 CTTTTTATTTCTAAA TGAATACTACGTCC ATA GGGCGTGGTATTCA TTTAGAAATAAAAAT TERM 1815 1687368 - 1687343 - g 75 -6.1 -4.49958 | opp_overlap 1687345, overlap 1687346 ATCTGATGAAATAAA CATCGGTGATC GCCA GATAACCGGTG TTAAAGCGGGTGTTG TERM 1816 1688053 - 1688074 + G 81 -12.3 -3.0264 | overlap 1688072 GAGTCAATGTTTCTG CCGACACTG AAGG CGGTGTCGG TGTTGCAGCGGGTTT YPTS_1513 1687014 - 1688108 + | hemagluttinin domain-containing protein TERM 1817 1689555 - 1689577 + G 79 -11.4 -3.10894 | opp_overlap 1689555 AAGAGGCTAATTACA TGTCACATCT TAT AGATGTGACG TTAAATAATGCTAAT YPTS_1514 1688129 - 1689976 + | hypothetical protein TERM 1818 1690092 - 1690078 - f 71 -8.6 -3.56568 | opp_overlap 1690078 CAAGCAGCGTTCAAA TCTGCT CCC AGCAGA TTTGTCACCCCAGTC TERM 1819 1690078 - 1690092 + F 75 -8.6 -3.86015 | opp_overlap 1690078 CAAGCAGCGTTCAAA TCTGCT CCC AGCAGA TTTGTCACCCCAGTC YPTS_1515 1690343 - 1691428 + | phosphoserine aminotransferase YPTS_1516 1691601 - 1692887 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1820 1693143 - 1693175 + F 72 -10 -2.78679 | gap 1, overlap 1693123 1693142 AGCGTATAATGCTAC CTCTGTGTTTGCCCT GCCG GGGGCAGACA-AGAG ATTTGCCTACCGAAA TERM 1821 1693392 - 1693409 + G 74 -4.1 -4.86731 | ATTGGTACCACTTGC CGCACAT CTCG ATGTTCG TTTTGTTTCACAGAA YPTS_1517 1693201 - 1693893 + | cytidylate kinase YPTS_1518 1694067 - 1695740 + | ribosomal protein S1 YPTS_1519 1695801 - 1696085 + | integration host factor, beta subunit YPTS_1520 1696371 - 1696069 - | hypothetical protein TERM 1822 1696131 - 1696150 + g 100 -7.1 -5.81412 | opp_overlap 1696131 AACGCTGATACGAAA CGGTGCC CTTATC GGCATCG TTTTTTTTGCGTAAA YPTS_1521 1696632 - 1698923 + | DNA internalization-related competence protein ComEC/Rec2 TERM 1823 1699505 - 1699521 + G 74 -6.5 -4.33274 | GTGTCTATTTCGATC CGTCTGG TAT CCAAACG TTTTCGTAATATCAG YPTS_1522 1698959 - 1700707 + | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA TERM 1824 1700898 - 1700888 - g 71 -6.8 -4.19238 | opp_overlap 1700887 GGGGGAACGGTAAAA CACC GGT GGTG ATCTGGTTGGTTGAA YPTS_1523 1700704 - 1701690 + | tetraacyldisaccharide 4'-kinase YPTS_1524 1703188 - 1701698 - | hypothetical protein TERM 1825 1701732 - 1701763 + g 76 -11 -3.18681 | gap 1, overlap 1701737 1701738 AGTTTGAGGGCGGCT GCACATTCAGCAACG GAA CGTTGCTGGGT-TGC TTCGTAGAGTTGCAG TERM 1826 1701737 - 1701759 + g 75 -10.6 -3.40639 | overlap 1701732 1701738 GAGGGCGGCTGCACA TTCAGCAACG GAA CGTTGCTGGG TTGCTTCGTAGAGTT TERM 1827 1701738 - 1701758 + g 75 -11.9 -2.63901 | overlap 1701737 1701732 AGGGCGGCTGCACAT TCAGCAACG GAA CGTTGCTGG GTTGCTTCGTAGAGT TERM 1828 1703748 - 1703726 - H 74 -4.3 -4.93877 | gap 1 TCTCAGGAAATAAAA TGATTATGCA AGCG TGC-TAATCA TTCACCAAGATAGAC TERM 1829 1703791 - 1703776 - H 71 -4.6 -4.70046 | opp_overlap 1703777, overlap 1703777 GACAAAATTACAAAA CCCGCA ATTA TGCGGT TTTTTCATAAAATCA TERM 1830 1703777 - 1703790 + H 95 -8.1 -5.15634 | opp_overlap 1703777 1703776 ACAAAATTACAAAAC CCGCA ATTA TGCGG TTTTTTCATAAAATC YPTS_1525 1703907 - 1704116 + | cold-shock DNA-binding domain-containing protein TERM 1831 1704142 - 1704122 - f 100 -12.6 -3.90112 | opp_overlap 1704122 CGCTTTCTAAGCAAA CGGCTACC TCATC GGTAGCCG TTTCTCCCTTCTCGT TERM 1832 1704122 - 1704142 + F 100 -12.6 -4.00468 | opp_overlap 1704122 CGCTTTCTAAGCAAA CGGCTACC TCATC GGTAGCCG TTTCTCCCTTCTCGT YPTS_1526 1704664 - 1704846 + | hypothetical protein YPTS_1527 1704843 - 1705595 + | 3-deoxy-D-manno-octulosonate cytidylyltransferase TERM 1833 1705616 - 1705640 + F 100 -12.1 -4.15703 | opp_overlap 1705612 GCGACGGAAACTTTA CGCCAGAACCT ACC GGGCTCTGGCG TTGTTATTTCTAACC YPTS_1528 1705958 - 1706851 + | hypothetical protein TERM 1834 1707960 - 1707946 - g 71 -4.2 -4.7373 | overlap 1707948 GCAGCTCACGAAAAA GGTGTG AGC CACAAC ATGCAATTTATACAA TERM 1835 1708049 - 1708081 + G 71 -4.2 -4.7373 | gap 1, opp_overlap 1708049 1708052, overlap 1708051 1708052 1708052 ATGCGGTATTAGAAT GGATT-GCTGAACCT CAGC AGGTTCTGCAAATAC TTTTTGATACGCTAA YPTS_1529 1707679 - 1708464 + | methyltransferase type 11 YPTS_1530 1708461 - 1709783 + | chromosome segregation and condensation protein MukF YPTS_1531 1709764 - 1710492 + | chromosome segregation and condensation protein MukE TERM 1836 1711134 - 1711144 + G 71 -6.8 -4.20367 | overlap 1711133 AGCGCCATTACTCGC TCGC TAC GCGA TTATTTATTGCCAGA TERM 1837 1713883 - 1713869 - g 73 -8.5 -3.82603 | AATGGTGAAAGATAA CGGCG TTGAG CGCCG CTTGCACCGCCGTGA YPTS_1532 1710489 - 1714946 + | chromosome segregation and condensation protein MukB domain-containing protein TERM 1838 1714991 - 1715010 + F 100 -7.1 -5.8096 | opp_overlap 1714991 ATGAGTTTTATTAAA TGGTCGC ACAGAA GCGGCCA TTTTTATTTTTTGTA TERM 1839 1717022 - 1717035 + G 73 -2.3 -5.08601 | opp_overlap 1717000 CTGGTGCACAAATCT CACAG CAGG CTGAG TTTTTATTGCAATAA YPTS_1533 1715194 - 1717050 + | peptidoglycan binding domain-containing protein YPTS_1534 1717274 - 1717822 + | hypothetical protein YPTS_1535 1717883 - 1718530 + | beta-lactamase domain-containing protein TERM 1840 1718624 - 1718653 + T 74 -7.9 -3.94482 | opp_overlap 1718625 1718631, overlap 1718626 1718631 AGATGAATGTTTAAT AGCAAAAGATGCC GGAA GGCGTCTTTTGTG TTCTCTTTCGTTTAT TERM 1841 1718626 - 1718651 + T 100 -12.7 -3.53929 | opp_overlap 1718625 1718631, overlap 1718624 1718631 ATGAATGTTTAATAG CAAAAGATGCC GGAA GGCGTCTTTTG TGTTCTCTTTCGTTT TERM 1842 1718631 - 1718646 + T 82 -6.8 -4.80729 | opp_overlap 1718631 1718625, overlap 1718626 1718624 TGTTTAATAGCAAAA GATGCC GGAA GGCGTC TTTTGTGTTCTCTTT TERM 1843 1718703 - 1718734 + T 100 -14.6 -2.77013 | opp_overlap 1718710, overlap 1718710 GTAATCGAGTGACCA GTCAAAAGGATGGC TTGG GCCATCCTTTTGAG GTTATTGACAAAGTG TERM 1844 1718727 - 1718710 - T 100 -11.3 -4.21462 | opp_overlap 1718703 1718710 AGTGACCAGTCAAAA GGATGGC TTGG GCCATCC TTTTGAGGTTATTGA TERM 1845 1718710 - 1718727 + T 100 -11.3 -4.24123 | opp_overlap 1718710, overlap 1718703 AGTGACCAGTCAAAA GGATGGC TTGG GCCATCC TTTTGAGGTTATTGA TERM 1846 1718808 - 1718834 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1718797, overlap 1718803 1718809 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1847 1718809 - 1718835 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1718797, overlap 1718803 1718808 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1848 1718899 - 1718916 + T 100 -11.3 -4.4767 | opp_overlap 1718902 TGTCAGCAGTCTGAA GGATGGC TTGG GCCATCC TTTTATGGTCAGTCA YPTS_1536 1720144 - 1718954 - | aminotransferase class I and II TERM 1849 1719727 - 1719740 + g 73 -2.3 -5.04325 | CCACTTCCAGCCCTG CGGCT TCGA AGACG TTTTTATGGTTTGGC TERM 1850 1720289 - 1720273 - R 73 -5.1 -4.62336 | overlap 1720284 1720285 ATCTGAGGTGAAAAA TCGGC AAAATAG GCCGA TAGACAGAGTAATCT TERM 1851 1720354 - 1720335 - R 100 -10 -5.48623 | opp_overlap 1720335 AAATAGAAACAAAAA GACAGAGC CGAG GCCCTGTC TTTTTTCAACTTAGG TERM 1852 1720335 - 1720354 + r 95 -7.8 -5.09426 | opp_overlap 1720335 AAATAGAAACAAAAA GACAGAGC CGAG GCCCTGTC TTTTTTCAACTTAGG YPTS_1537 1721483 - 1720401 - | porin TERM 1853 1721747 - 1721717 - R 100 -9.8 -5.09426 | opp_overlap 1721720 1721725, overlap 1721718 1721720 1721725 TCGAATTTTAAAAAA TGATAAAAGCCAGC AGA GCTGGCTTTTATTT GTACAAATTGACGTT TERM 1854 1721746 - 1721718 - R 100 -13.3 -3.64933 | opp_overlap 1721720 1721725, overlap 1721717 1721720 1721725 CGAATTTTAAAAAAT GATAAAAGCCAGC AGA GCTGGCTTTTATT TGTACAAATTGACGT TERM 1855 1721720 - 1721744 + r 100 -15.9 -3.89614 | opp_overlap 1721718 1721717 1721720 1721725, overlap 1721725 AATTTTAAAAAATGA TAAAAGCCAGC AGA GCTGGCTTTTA TTTGTACAAATTGAC TERM 1856 1721744 - 1721720 - R 100 -15.9 -3.39328 | opp_overlap 1721720 1721725, overlap 1721718 1721717 1721725 AATTTTAAAAAATGA TAAAAGCCAGC AGA GCTGGCTTTTA TTTGTACAAATTGAC TERM 1857 1721725 - 1721739 + r 100 -11.4 -4.99043 | opp_overlap 1721720 1721718 1721717 1721725, overlap 1721720 TAAAAAATGATAAAA GCCAGC AGA GCTGGC TTTTATTTGTACAAA TERM 1858 1721739 - 1721725 - R 100 -11.4 -4.76171 | opp_overlap 1721725 1721720, overlap 1721720 1721718 1721717 TAAAAAATGATAAAA GCCAGC AGA GCTGGC TTTTATTTGTACAAA YPTS_1538 1723181 - 1721781 - | asparaginyl-tRNA synthetase YPTS_1539 1724891 - 1723671 - | nicotinate phosphoribosyltransferase TERM 1859 1723958 - 1723973 + g 85 -7.6 -4.77036 | CCAATACCTTTTTCA TTGGGT CAAT ACCCAA TTTTTCATAATGCGC TERM 1860 1725439 - 1725456 + G 95 -4.1 -5.76949 | TATTTGCCGGAGTCG CCTGGGT TCTC ATCTAGG TTTTTTTTACAACTG YPTS_1540 1725407 - 1725514 + | hypothetical protein TERM 1861 1725705 - 1725692 - g 75 -3.7 -5.03314 | TGGATGCGCAAAAAA CGACG GTAA CGGCG GTCAGTAAAGTAAAA YPTS_1541 1725592 - 1728207 + | aminopeptidase N TERM 1862 1728508 - 1728487 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPTS_1542 1729690 - 1728482 - | transposase mutator type YPTS_1543 1730166 - 1731176 + | dihydroorotate dehydrogenase TERM 1863 1731633 - 1731648 + G 78 -7.6 -4.36914 | TCTTGAAACCACTCA TGCCAA AAAG TTGGCA TTTTGTACAGCAACC YPTS_1544 1731359 - 1731910 + | hypothetical protein YPTS_1545 1733045 - 1731936 - | MOSC domain-containing protein YPTS_1546 1733148 - 1735268 + | putative RNA methylase TERM 1864 1737050 - 1737070 + G 78 -9.1 -4.07568 | opp_overlap 1737033, overlap 1737054 AGCAAGTTACAGGCT GAAGTCAGT GAT ACTGATTTC TTTTCCCGCCCACAC TERM 1865 1737054 - 1737066 + G 77 -6.3 -4.64861 | overlap 1737050 AGTTACAGGCTGAAG TCAGT GAT ACTGA TTTCTTTTCCCGCCC YPTS_1547 1735274 - 1737187 + | ABC transporter related YPTS_1548 1737316 - 1738602 + | PqiA family integral membrane protein YPTS_1549 1738589 - 1740241 + | hypothetical protein YPTS_1550 1740238 - 1740798 + | hypothetical protein TERM 1866 1740822 - 1740863 + F 70 -5.9 -4.3851 | overlap 1740823 TCTAAATCAGTCTAA TCCTCTTTCTCTGGTAATA ATCA TCTTGTCAGGGGAAGGGGG TTTCTATTTAATATC YPTS_1551 1741068 - 1741235 + | ribosome modulation factor TERM 1867 1741263 - 1741281 + F 100 -11.7 -4.48987 | opp_overlap 1741258 1741257 CATTATCAAGGGTAA CCTCCGC ATTAG GCGGAGG TTTTCATTGTGCCCA TERM 1868 1741302 - 1741320 + G 100 -16 -3.07307 | opp_overlap 1741302 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1869 1741320 - 1741302 - g 100 -16 -4.37092 | opp_overlap 1741302 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPTS_1552 1741288 - 1741443 + | hypothetical protein YPTS_1553 1741433 - 1741891 + | transposase IS200-family protein TERM 1870 1741965 - 1741997 + T 100 -11.3 -4.26351 | opp_overlap 1741972, overlap 1741969 1741971 1741972 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATTGCGTTAGTC TERM 1871 1741969 - 1741993 + T 100 -9.9 -4.70117 | opp_overlap 1741972, overlap 1741965 1741971 1741972 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATTGCGTT TERM 1872 1741971 - 1741991 + T 100 -12.5 -3.94772 | opp_overlap 1741972, overlap 1741969 1741965 1741972 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATTGCG TERM 1873 1741972 - 1741990 + T 100 -16 -2.95779 | opp_overlap 1741972, overlap 1741971 1741969 1741965 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATTGC TERM 1874 1741990 - 1741972 - T 100 -16 -4.8048 | opp_overlap 1741972 1741971 1741969 1741965 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATTGC YPTS_1554 1743281 - 1742007 - | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 1875 1742830 - 1742818 - G 71 -9.1 -3.61232 | opp_overlap 1742816, overlap 1742816 TGTTTGATAGAAACA TGGCC AGC GGCCA AATTCACTAAGAATG YPTS_1555 1743527 - 1743715 + | hypothetical protein TERM 1876 1743957 - 1743921 - T 79 -6.8 -4.69664 | gap 1, opp_overlap 1743924 1743927, overlap 1743924 TATATCACGTAAAAA CAATAAGGCG-ACATGA TTAA TCATATTCGCCTTATTT TACAATGCATTGACT TERM 1877 1743954 - 1743924 - T 87 -8.5 -4.4521 | gap 1, opp_overlap 1743924 1743927, overlap 1743921 ATCACGTAAAAACAA TAAGGCG-ACATGA TTAA TCATATTCGCCTTA TTTTACAATGCATTG YPTS_1556 1744607 - 1743981 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YPTS_1557 1746190 - 1744568 - | hypothetical protein TERM 1878 1745541 - 1745552 + gH 75 -5.8 -4.65916 | opp_overlap 1745541 1745540 GCATCGGCAGATAAG GCAG GGAG CTGC TTTTGTTGCAATAGG TERM 1879 1746605 - 1746593 - g 80 -4.8 -5.0133 | TATTTGGTCAAAAAA CACC GTGAA GGTG AAGCCATTACCCGCC YPTS_1558 1746530 - 1746985 + | hypothetical protein TERM 1880 1747069 - 1747053 - T 100 -11.5 -6.00086 | opp_overlap 1747053 ACAGGATAAAAAAAA CCCCGCA TAG CGCGGGG TTTTTCACGAAAGAA TERM 1881 1747053 - 1747069 + T 100 -10.8 -4.56597 | opp_overlap 1747053 ACAGGATAAAAAAAA CCCCGC ATAGC GCGGGG TTTTTCACGAAAGAA YPTS_1559 1748152 - 1747091 - | OmpA domain-containing protein TERM 1882 1748202 - 1748226 + r 71 -5 -4.62336 | CTTTAAAAGCTAAGC CCTTGGTTAA AATTC TTCGCCAAGG TTTTTACGCTCCCGT YPTS_1560 1749016 - 1748510 - | cell division inhibitor SulA TERM 1883 1749145 - 1749164 + H 75 -5.8 -4.68506 | CATTTTATGTTTGGC TACGTAAT CCAT ATTGCGTA TTTTTGCAATTAGTT YPTS_1561 1749245 - 1749880 + | regulator of competence-specific genes TERM 1884 1749972 - 1749954 - T 80 -11.7 -2.63747 | opp_overlap 1749954, overlap 1749953 ATGAAACCGTATAAT GGGCCAC GATGG GTGGCCC TTGGGTACCTTAGGC TERM 1885 1749954 - 1749972 + T 84 -11.7 -3.09933 | opp_overlap 1749954 1749953 ATGAAACCGTATAAT GGGCCAC GATGG GTGGCCC TTGGGTACCTTAGGC YPTS_1562 1752120 - 1749982 - | hypothetical protein TERM 1886 1750283 - 1750310 + g 71 -4 -4.66388 | opp_overlap 1750287, overlap 1750287 1750291 ATGGTGTGGTTCAGG CAAAGTAAGCGG AATG CCGCTTCCTGAG TTTCTTTATCGTTTT TERM 1887 1750717 - 1750695 - G 73 -7.1 -4.19369 | gap 1, opp_overlap 1750698 ACGCAAAAAACAGAA CACCACTGAT CACA ATCAG-GGTG AGTTGCCCCTCAAGA YPTS_1563 1752596 - 1752150 - | hypothetical protein TERM 1888 1752638 - 1752628 - H 71 -2.4 -5.08824 | opp_overlap 1752637 CGTTGAGTGAAAAAA CCGC AAT GTGG CTGAGCGATAGCCTA YPTS_1564 1752790 - 1754844 + | UvrD/REP helicase TERM 1889 1754871 - 1754900 + T 86 -11.5 -3.29187 | gap 1, opp_overlap 1754876, overlap 1754876 1754895 AAGCGATGCTCAATA CTAAACCCGGTGGT TGA ACCACCGGGTG-AG TTACCTATTTTAGGT TERM 1890 1754876 - 1754896 + T 100 -16.9 -2.58183 | opp_overlap 1754876, overlap 1754871 1754895 ATGCTCAATACTAAA CCCGGTGGT TGA ACCACCGGG TGAGTTACCTATTTT TERM 1891 1754896 - 1754876 - T 100 -16.9 -3.92592 | opp_overlap 1754876 1754871 1754895 ATGCTCAATACTAAA CCCGGTGGT TGA ACCACCGGG TGAGTTACCTATTTT YPTS_1565 1755369 - 1754905 - | methylglyoxal synthase YPTS_1566 1756228 - 1755548 - | hypothetical protein YPTS_1567 1756544 - 1756960 + | CoA-binding domain-containing protein TERM 1892 1757025 - 1756995 - T 100 -9.7 -5.00616 | overlap 1756996 GGGCTTTCTAAAAAA GCACCCTGTCAGC GTGCT GCTCACAGGGTGG CGAACCTGGCAATCA TERM 1893 1757024 - 1756996 - T 100 -13.2 -3.60048 | overlap 1756995 GGCTTTCTAAAAAAG CACCCTGTCAGC GTGCT GCTCACAGGGTG GCGAACCTGGCAATC YPTS_1568 1757386 - 1757069 - | hemimethylated DNA binding protein YPTS_1569 1758637 - 1757447 - | PUA domain-containing protein TERM 1894 1757521 - 1757496 - G 75 -10.5 -3.2964 | gap 1, opp_overlap 1757512 AAACCTTCTGGATAA GCCGC-GATCAC TGG GTGATCCGCAGC TTGGCGGAACTGCTC TERM 1895 1758887 - 1758866 - g 73 -9.5 -3.33162 | gap 1 GATGGTAGCGTAGAA GTGG-TTGCC AGC GGCAATCCAC AAGCAGTTGAACGTC YPTS_1570 1758731 - 1759009 + | acylphosphatase YPTS_1571 1759390 - 1759061 - | TusE/DsrC/DsvC family sulfur relay protein YPTS_1573 1760137 - 1760424 + | transposase TERM 1896 1760613 - 1760625 + T 82 -2 -5.65177 | opp_overlap 1760613 TATATATCCAATATA TACT CACGA AGTA TTTTTTTATGGATAT TERM 1897 1762708 - 1762652 - T 73 -8.89999 -3.55304 | gap 3, opp_overlap 1762653, overlap 1762659 1762660 ATATCTAACAAGCAA TTATCAAGTTCGCCTTATCTCCCCGTCC TTCA GGGCGGGGAGATAAGGCG--CT-GAGAT TCCATTTAGTTGTTC TERM 1898 1762653 - 1762707 + T 100 -14.6 -3.35072 | gap 3, opp_overlap 1762652 1762659 1762660 TATCTAACAAGCAAT TATCAAGTTCGCCTTATCTCCCCGTCC TTCA GGGCGGGGAGATAAGGCG--CT-GAGA TTCCATTTAGTTGTT TERM 1899 1762702 - 1762659 - T 100 -16.9 -3.30956 | gap 2, opp_overlap 1762653, overlap 1762652 1762660 ACAAGCAATTATCAA GTTCGCCTTATCTCCCCGTCC TTCA GGGCGGGGAGATAAGGCG--C TGAGATTCCATTTAG TERM 1900 1762703 - 1762660 - T 100 -19.6 -2.5785 | opp_overlap 1762653, overlap 1762659 1762652 CAAGCAATTATCAAG TTCGCCTTATCTCCCCGTCC TTCA GGGCGGGGAGATAAGGCGCT GAGATTCCATTTAGT YPTS_1576 1765131 - 1762714 - | FAD linked oxidase domain-containing protein YPTS_1577 1766031 - 1765285 - | short-chain dehydrogenase/reductase SDR TERM 1901 1765528 - 1765538 + g 71 -6.8 -4.28548 | AGTAGTCGCAACCTC CAGC GCT GCTG TTTTGGTCAATCCCT YPTS_1578 1766660 - 1766980 + | hypothetical protein YPTS_1579 1767244 - 1767768 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ TERM 1902 1767980 - 1767998 + G 73 -5.2 -4.56597 | ATTCCCGATATAGTT CTTTCCCG TGC CGAGAAGG TTTTTAAACAGACGA YPTS_1580 1767758 - 1769041 + | Beta-ketoacyl synthase YPTS_1581 1769043 - 1769780 + | short-chain dehydrogenase/reductase SDR TERM 1903 1770658 - 1770646 - g 77 -4.1 -5.03715 | opp_overlap 1770646 ATTACGCGCAAAAAA TAGGC GCG ACCTA TTGTGGCAGCATTTT YPTS_1582 1769796 - 1771034 + | hydroxymethylglutaryl-coenzyme A synthase TERM 1904 1771312 - 1771322 + G 73 -3.2 -4.87592 | GGGCTTGCCTTACTG TCGG TTG TCGA TTTTATTCTGTCTAG YPTS_1583 1771027 - 1771746 + | enoyl-CoA hydratase/isomerase YPTS_1584 1771748 - 1772500 + | enoyl-CoA hydratase/isomerase YPTS_1585 1772503 - 1773291 + | short-chain dehydrogenase/reductase SDR YPTS_1586 1773486 - 1773818 + | hypothetical protein YPTS_1587 1773856 - 1774104 + | putative acyl carrier protein TERM 1905 1774469 - 1774481 + G 70 -7.7 -3.79668 | ATTTTTAGCGGGTCA TTCGC TTG GCGAA TTTAATGCATTACAT YPTS_1588 1774203 - 1775051 + | putative acyltransferase YPTS_1589 1775107 - 1775349 + | hypothetical protein TERM 1906 1775599 - 1775574 - f 82 -4.8 -5.41143 | opp_overlap 1775576, overlap 1775576 CATTTCTGAAAAAAA TATTTGTAGG CGAATT CCTACAAATC ACTTCCCAAATTCCT TERM 1907 1775597 - 1775576 - f 75 -7.4 -4.34482 | opp_overlap 1775576, overlap 1775574 TTTCTGAAAAAAATA TTTGTAGG CGAATT CCTACAAA TCACTTCCCAAATTC YPTS_1590 1776014 - 1776514 + | type VI secretion protein TERM 1908 1776602 - 1776580 - g 74 -6.3 -4.34402 | gap 1, overlap 1776581 GTCTGTACAGGAAAA CCGTGCGCAG GGTA CTGCG-ACGA CCGTATTAAAGAATA YPTS_1591 1776563 - 1778107 + | EvpB family type VI secretion protein YPTS_1592 1778119 - 1779471 + | type VI secretion protein TERM 1909 1779758 - 1779775 + G 74 -2.6 -5.09225 | overlap 1779760 1779761 CTTCGTGTGGTGCCA TTCGCC CTTACA GGCGCA TTTTTTCAATACCCT YPTS_1593 1779468 - 1780154 + | hypothetical protein TERM 1910 1781241 - 1781271 + G 77 -10.4 -3.61398 | GGATGGCCTTTGATA TCCGTCAGTACCAC AGC GTGGCGATGACGGA TTATTCCCCGAAAGC YPTS_1594 1780154 - 1781899 + | OmpA/MotB domain-containing protein YPTS_1595 1781903 - 1782394 + | Hcp1 family type VI secretion system effector TERM 1911 1782600 - 1782619 + F 100 -9.2 -5.72118 | opp_overlap 1782598, overlap 1782601 ACGTTGTCATCAACC TCAGGCGG TTCG CCGCCTGC TTTTTTGTGTTTTTT TERM 1912 1782601 - 1782618 + F 100 -12.7 -3.9778 | opp_overlap 1782598, overlap 1782600 CGTTGTCATCAACCT CAGGCGG TTCG CCGCCTG CTTTTTTGTGTTTTT TERM 1913 1783515 - 1783492 - g 72 -6 -4.40561 | CCGCCGTAAAAATAA CCCGATTC TGGTCGGT GAACCGGG TGTGGGTAAAACCGC TERM 1914 1784775 - 1784765 - g 71 -8.2 -3.75153 | opp_overlap 1784768 GTCTCCCAATTGAAA GGGG CGC CCCC GGGCTATGTCGGTTA YPTS_1596 1782782 - 1785430 + | type VI secretion ATPase YPTS_1597 1785427 - 1787925 + | type VI secretion system Vgr family protein TERM 1915 1788949 - 1788939 - g 74 -4 -5.00616 | TGTTGGTGCAAAAAA TACT TTT AGTA ACATTAGCCTCTCTC YPTS_1598 1788043 - 1789314 + | hypothetical protein TERM 1916 1789454 - 1789429 - g 74 -11.3 -2.75481 | overlap 1789434 1789450 1789451 GCCGAAGTTGAACCA CCTAACTTACC TGAA GGTAAATTAGG GCAACCCTACTACGC YPTS_1599 1789384 - 1789713 + | putative lipoprotein YPTS_1600 1790029 - 1792731 + | type VI secretion system Vgr family protein YPTS_1601 1792734 - 1793150 + | hypothetical protein TERM 1917 1794162 - 1794148 - g 75 -5.7 -4.63218 | GCCTTGGGAAGAAAA GGGAA TGTCG TTCCC AGTACCTCCATATCC YPTS_1602 1793159 - 1794907 + | peptidoglycan-binding LysM YPTS_1603 1794912 - 1795424 + | hypothetical protein YPTS_1604 1795901 - 1796044 + | hypothetical protein TERM 1918 1796364 - 1796381 + G 83 -9.1 -4.44915 | AGTTCTGGTGGTTTG CCATCGG TATC CCGGTGG TTTTCTGGCTGGTTC YPTS_1605 1796204 - 1797436 + | hypothetical protein TERM 1919 1798916 - 1798904 - g 72 -10.5 -3.01791 | AGCTGCCCGCCAACA GCCCG CAA CGGGC AGCACGGGCAAAAAC TERM 1920 1798970 - 1798931 - g 71 -5 -4.60487 | CAGCACGGGCAAAAA CAGGCTATGACCAGTTAA AGGC TTATCTGATGATGGCCCG CCCGGAAAAAGCCGA TERM 1921 1799387 - 1799372 - g 75 -6 -4.61199 | overlap 1799374 AGGCGATAGATAAAA CGGTGG CCTC CCGCCG CGAAGAAATTGACTG TERM 1922 1799832 - 1799811 - g 74 -6.5 -4.42653 | overlap 1799814 AGGCGATGCACAAAA CAGGCTGTC GTCG GACAGCTCG CTGAGCCTGCAAACG YPTS_1606 1797433 - 1800855 + | ImcF domain-containing protein TERM 1923 1801638 - 1801620 - g 74 -6.6 -4.371 | opp_overlap 1801631, overlap 1801614 1801631 1801633 TCGATCAGACCAAAA CGCTGGCA AAA TACCTGCG CAACCAGCCGCAGGG TERM 1924 1801759 - 1801733 - g 75 -11.4 -2.54523 | TTAGATGTGAACGGA CGGACCCGGCTG GTA CCGCCGCGCCCG GAATATCGCGTACAA YPTS_1607 1800899 - 1802500 + | type VI secretion-associated protein YPTS_1608 1802518 - 1803576 + | hypothetical protein TERM 1925 1803917 - 1803933 + G 71 -6.5 -4.254 | overlap 1803928 ACAAGCATTTATGCT CACCAGA GCC TCTGGAG TTTGTTCAGTATTGA YPTS_1609 1803576 - 1804046 + | hypothetical protein TERM 1926 1804972 - 1804949 - gf 83 -11.8 -2.82516 | gap 1, opp_overlap 1804947 1804942 1804951, overlap 1804951 TCGGGGAGCAGGATA CACTGT-GGCC GAA GGCCGACAGTG CGTTCAGTGGTTATC YPTS_1610 1804267 - 1806030 + | type VI secretion protein YPTS_1611 1805994 - 1807079 + | type VI secretion protein YPTS_1612 1807054 - 1807635 + | hypothetical protein YPTS_1613 1807635 - 1808087 + | type VI secretion system lysozyme-related protein TERM 1927 1808217 - 1808201 - g 71 -5 -4.56702 | opp_overlap 1808207 1808209, overlap 1808202 1808203 GGTGAATTAAATAAA CTGGCC CACCC GGCCCG TCCGGATGTTGACTG TERM 1928 1808750 - 1808765 + G 80 -9 -4.19817 | AGCGAACCGGCCCCG CCACCT GTTC AGGTGG TTTTACCTGCCTCAC YPTS_1614 1808111 - 1809478 + | ImpA domain-containing protein TERM 1929 1809631 - 1809582 - T 81 -10.8 -3.27923 | gap 1, opp_overlap 1809587, overlap 1809586 1809591 TTTGAATATTATTAA TTAATGATAGCGCTCACAGCGGG GTGAT CCTGCTG-GAGCGCGACCTTTAA ACTGTATTAACACCA TERM 1930 1809587 - 1809626 + T 90 -11.4 -3.66883 | gap 1, opp_overlap 1809586 1809582 1809591 ATATTATTAATTAAT GATAGCGCTCACAGCGGGG TGA TCCTGCTG-GAGCGCGACC TTTAAACTGTATTAA TERM 1931 1809622 - 1809591 - T 93 -12.3 -2.97613 | gap 1, opp_overlap 1809587, overlap 1809586 1809582 TATTAATTAATGATA GCGCTCACAGCGGG GTGAT CCTGCTG-GAGCGC GACCTTTAAACTGTA YPTS_1615 1810313 - 1809690 - | hypothetical protein TERM 1932 1810125 - 1810110 - G 79 -3.2 -5.18371 | TTCGACAAAATAAAA CTCAGC TGTT GTTGAG GCGTTATAGCGTTCT TERM 1933 1810193 - 1810203 + g 100 -4 -6.07969 | overlap 1810180 TATGTTGGGTCTCAG CATT TAT AATG TTTTTTTTGATTTTC TERM 1934 1810791 - 1810817 + H 73 -3.6 -5.02502 | TATATAGGTAAAACG TCGTGTCTGCGA GCT TTGATGGCACGA TTTTTCTGTCATGTC YPTS_1616 1810996 - 1812591 + | ABC transporter related TERM 1935 1812635 - 1812617 - f 100 -8.8 -5.8187 | opp_overlap 1812617 GACCTAACAAAAAAA GCTGATGC TAT GCGTCAGC TTTTTTTATGTCTTC TERM 1936 1812617 - 1812635 + F 100 -11 -5.80248 | opp_overlap 1812617 GACCTAACAAAAAAA GCTGATGC TAT GCGTCAGC TTTTTTTATGTCTTC YPTS_1617 1812819 - 1813466 + | hypothetical protein YPTS_1618 1814308 - 1813538 - | molybdopterin synthase sulfurylase MoeB YPTS_1619 1815584 - 1814310 - | molybdenum cofactor synthesis domain-containing protein YPTS_1620 1815894 - 1815646 - | hypothetical protein TERM 1937 1815738 - 1815763 + g 83 -9.1 -4.34345 | overlap 1815739 AAAAATGAGATGGCT TGATACTGCTT TTAC GAGCAGTATCG TTTTCATCGTATATA TERM 1938 1815739 - 1815762 + g 73 -10.4 -3.19884 | overlap 1815738 AAAATGAGATGGCTT GATACTGCTT TTAC GAGCAGTATC GTTTTCATCGTATAT TERM 1939 1816124 - 1816095 - R 72 -9.3 -3.11687 | opp_overlap 1816093 TGAATCATGAGGCAA CGTTGACGCCATA ATGA TGTGGCTTCAACG AATATCTGCCAGATA YPTS_1621 1817429 - 1816119 - | radical SAM domain-containing protein YPTS_1622 1818107 - 1817439 - | ABC transporter related YPTS_1623 1819371 - 1818109 - | RND family efflux transporter MFP subunit YPTS_1624 1821733 - 1819373 - | hypothetical protein TERM 1940 1820073 - 1820087 + g 78 -5.8 -4.76041 | opp_overlap 1820073 TTTGTCACTATAGCA TGATAA GTA TTATCA TTTTTACTGGGTGTA TERM 1941 1820352 - 1820371 + g 78 -5.8 -4.72272 | AATTCATCGCTTAGT GGAAATGT CACG ACATTTTC TTTTTCATAACCAAA TERM 1942 1820760 - 1820750 - G 75 -5.4 -4.72272 | TGTTGCGATGAAAAA TGAC TCT GTCA GTAATTGATAATTAG TERM 1943 1821463 - 1821473 + g 100 -5.4 -5.81622 | GTAAAGCGTAGGCGA CATC TTT GATG TTTTTTTCATTTTGT YPTS_1625 1822017 - 1821817 - | hypothetical protein TERM 1944 1821856 - 1821874 + g 71 -4.6 -4.58698 | CCAACTCCATGCCGT TATCTTAC TGT GTAGGGTA TTATTTTTAATTTCG TERM 1945 1822246 - 1822233 - R 95 -8.1 -5.10461 | opp_overlap 1822229 TCTATCGAATAAAAA GCCCT CGAA AGGGC TTGGGGTTTTATGTG YPTS_1626 1823128 - 1822286 - | S-formylglutathione hydrolase TERM 1946 1823086 - 1823047 - G 78 -12 -2.6252 | opp_overlap 1823047, overlap 1823043 1823044 TCATATGACAATTCA GGCTGCTGGCAGCATGGC GGTA GCGCTGTTGCCAGCCGCC AAACATCCGATGCTC YPTS_1627 1824288 - 1823149 - | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase TERM 1947 1824175 - 1824165 - G 73 -8.2 -3.87815 | overlap 1824149 CGTCAGTGTGACAAA CGCC ACT GGCG ACAATCCGCACTAAC YPTS_1628 1825430 - 1824561 - | LysR family transcriptional regulator TERM 1948 1825941 - 1825981 + G 79 -11.7 -3.19824 | overlap 1825935 1825940 1825940 1825942 GCACATTTTGGCCGT CCGGCGCTCAGTGCGGC CGTATTT GCCGGGCCGGGTGCCGG TATATTCATTAGTGG YPTS_1629 1825566 - 1826717 + | hypothetical protein TERM 1949 1826839 - 1826811 - f 93 -13.3 -2.84 | opp_overlap 1826834, overlap 1826808 ATCACTGGATAATCA TTTCGCTCTCAAT TAG AGTGAGAGCGAAA TTCGGGTGTGACCCG YPTS_1630 1826901 - 1827563 + | GTP cyclohydrolase I TERM 1950 1828018 - 1828032 + G 73 -10 -3.30418 | overlap 1828016 1828015 CAGCCAGCTTATTAC GTACCG GCG CGGTAC TCTATTTGATCGGTG TERM 1951 1828396 - 1828408 + G 80 -4.7 -5.14965 | overlap 1828397 ATGTCGGTTGGGATT ACCGC TGG GCGGG TTTTTTGCTACAAGT TERM 1952 1828397 - 1828407 + G 71 -8.2 -3.68256 | overlap 1828396 TGTCGGTTGGGATTA CCGC TGG GCGG GTTTTTTGCTACAAG YPTS_1631 1827618 - 1828784 + | hypothetical protein TERM 1953 1830116 - 1830105 - g 70 -2.2 -4.86621 | ACCCTGAATGAAAAA GGCT TGCC AACC CAACAATTGCAGTTA TERM 1954 1830488 - 1830466 - g 75 -3.4 -5.14698 | opp_overlap 1830467, overlap 1830467 AAATTGAAAACAAAA TCGTACGTAT TCC ATACGTAGGT GTTGATAAAGATAAT YPTS_1632 1829532 - 1830524 + | periplasmic binding protein/LacI transcriptional regulator TERM 1955 1831015 - 1830995 - g 71 -6.9 -4.30448 | overlap 1830988 AAATTGAATTTAAAA GTTCTAAAG AAG CATTAGAAC AGGGTGTTTCGATGG TERM 1956 1831077 - 1831106 + G 85 -2.8 -5.64274 | opp_overlap 1831074 1831077 1831079, overlap 1831079 TACAGTAATGGACAA CATGTGGTTGGG GCGCTA TCCAACCAAAGG TTTTTTTGTCGATCA YPTS_1633 1830754 - 1832274 + | ABC transporter related YPTS_1634 1832295 - 1833305 + | inner-membrane translocator TERM 1957 1833487 - 1833461 - T 100 -13.1 -4.68846 | gap 1, opp_overlap 1833456 AGGAATAAAGTAAAA GCCAGTCAGGGC GATA GCCCT-ACTGGC TGAAGTTAATGACAA YPTS_1635 1834487 - 1833750 - | hypothetical protein TERM 1958 1833897 - 1833885 - G 71 -6.9 -4.26871 | CAATGGACCAAGAAA GCGAG GTT CCCGC TTAAGAATATAGAGG TERM 1959 1834653 - 1834664 + r 71 -3 -5.06816 | CGCATGTGCTTTGGG GTTA CAAG TAAC TTTTTGTTCAACGCT TERM 1960 1834734 - 1834761 + r 73 -8.3 -3.65812 | overlap 1834735 GATAGCATCTGAGTA CCCGGCCTGCG GTATAG CACAGGCCGGA TTATATTCAAAACGA TERM 1961 1834735 - 1834760 + r 83 -11.8 -2.79273 | overlap 1834734 ATAGCATCTGAGTAC CCGGCCTGCG GTATAG CACAGGCCGG ATTATATTCAAAACG YPTS_1636 1836465 - 1834768 - | malic protein NAD-binding TERM 1962 1835374 - 1835390 + g 76 -2.2 -5.25803 | ATTGTGCAGATTCCA GTGGTG TAGGT CGTCAC TTTTTTGTACCAATT YPTS_1637 1837705 - 1836821 - | cytidine deaminase TERM 1963 1838020 - 1837996 - R 71 -9.3 -2.98729 | overlap 1837976 GATAAGGATTACAGA CCCTGACGT CGCTATC ACGCCAGGG GAAAGTGGGTTCAAC YPTS_1638 1838726 - 1838031 - | LrgB family protein TERM 1964 1838289 - 1838273 - G 80 -7.3 -4.62904 | AAATACCGGCAAAAA TAACGCA AAC TGCGCTA ATAGCGGGTAAACCA YPTS_1639 1839130 - 1838723 - | LrgA family protein TERM 1965 1839108 - 1839090 - G 71 -8.8 -3.6512 | TAAATAATGGTGAAA GCTCGCAG GTA CTGCCAGC AAAGTGACATCATAT YPTS_1640 1840553 - 1839372 - | major facilitator transporter TERM 1966 1839631 - 1839620 - G 89 -5.8 -5.26875 | CGCCCAATGAAAAAA TGGC CATT GCCA GCATCCATAACGGAA TERM 1967 1840530 - 1840556 + g 73 -2.2 -5.16681 | opp_overlap 1840509, overlap 1840535 AATCAGCAGATTGGT TACGCGCGATGA GAA TCTTTGCATGTA TTTTCTTATTTTTAG TERM 1968 1840709 - 1840736 + r 93 -9.8 -4.39226 | opp_overlap 1840711, overlap 1840706 1840711 GAAAATTTTTGCAGG AAGCAGTTCGGC CAGA GCCGATCTGCTA TTATTTTCTAGTTAT TERM 1969 1840711 - 1840734 + r 100 -12.4 -3.78091 | opp_overlap 1840711, overlap 1840709 1840706 AAATTTTTGCAGGAA GCAGTTCGGC CAGA GCCGATCTGC TATTATTTTCTAGTT TERM 1970 1840734 - 1840711 - R 93 -12.4 -3.1506 | opp_overlap 1840711 1840709 1840706 AAATTTTTGCAGGAA GCAGTTCGGC CAGA GCCGATCTGC TATTATTTTCTAGTT YPTS_1641 1842158 - 1840905 - | hypothetical protein TERM 1971 1841965 - 1841979 + g 90 -9.2 -4.63184 | opp_overlap 1841965 GGCGCAGCGATGAAA CCTGCG GGA CGCGGG TTTTTGGCATCCCTT TERM 1972 1842124 - 1842104 - G 76 -11.1 -3.15544 | opp_overlap 1842105 1842107, overlap 1842107 GGTCACTGTGACCAA TCAGCCGCA TAT TGCGGCTGT ATTCAGGTATCGGCA TERM 1973 1842105 - 1842123 + g 91 -14.6 -3.07962 | opp_overlap 1842104 1842107, overlap 1842107 GTCACTGTGACCAAT CAGCCGCA TAT TGCGGCTG TATTCAGGTATCGGC TERM 1974 1842121 - 1842107 - G 76 -11.4 -2.78216 | opp_overlap 1842105 1842107, overlap 1842104 CACTGTGACCAATCA GCCGCA TAT TGCGGC TGTATTCAGGTATCG TERM 1975 1842107 - 1842121 + g 79 -11.4 -3.09785 | opp_overlap 1842107 1842104, overlap 1842105 CACTGTGACCAATCA GCCGCA TAT TGCGGC TGTATTCAGGTATCG YPTS_1642 1843252 - 1842176 - | hypothetical protein TERM 1976 1843888 - 1843898 + G 89 -3.2 -5.61689 | GCCTATTTTTATATA TCGC GCA GTGA TTTTTTATTAATTTT TERM 1977 1844323 - 1844337 + G 73 -3.6 -4.84274 | GTGTGGTTTGATCTA GATGAT GCG ATTATC TTTTTGATGTCGTTA YPTS_1643 1843786 - 1844616 + | hypothetical protein TERM 1978 1844657 - 1844683 + T 70 -2.9 -5.00196 | gap 1, opp_overlap 1844657 1844659, overlap 1844652 1844659 TTTCAATCATAAAAA TACCGGT-AGGG TTAC CCCAGACCGGCA TTTTGTTCTTTAAGG TERM 1979 1844683 - 1844657 - T 78 -5.1 -4.98255 | gap 1, opp_overlap 1844657 1844652 1844659, overlap 1844659 TTTCAATCATAAAAA TACCGGT-AGGG TTAC CCCAGACCGGCA TTTTGTTCTTTAAGG YPTS_1644 1846772 - 1844745 - | methionyl-tRNA synthetase YPTS_1645 1847037 - 1848149 + | hypothetical protein TERM 1980 1848221 - 1848183 - f 86 -11.8 -3.07344 | opp_overlap 1848197 TGAGCGCGTAACACA CTGAGCCGGAAAGGTCAT TCA ATGATGCTTCCGGCTCAA GATCGGCTTAAATAG TERM 1981 1848726 - 1848710 - g 73 -2.2 -5.0666 | overlap 1848711 CACGTAAAAAAGAAA CGGTTC ATTTA GAACCT AAAAAAGTGATCATT YPTS_1646 1848394 - 1849035 + | uridine kinase YPTS_1647 1849140 - 1849721 + | deoxycytidine triphosphate deaminase TERM 1982 1849836 - 1849863 + F 71 -4.8 -4.63592 | CGCTTTCCCTTCATT TGACTTGGTCAG CAGT CTGGACTAGTCA TTCTTTTTATTGAGA TERM 1983 1850047 - 1850033 - g 74 -4.2 -4.99638 | overlap 1850035 ACAGGTAGAGAAAAA GAGTGG TTA CCACTT GCAGTTGGAGGGTGA YPTS_1648 1849908 - 1851764 + | AsmA family protein TERM 1984 1851854 - 1851819 - T 82 -10.5 -3.61922 | gap 1, opp_overlap 1851820 1851821 1851823, overlap 1851821 1851823 AATAGGTAGTGGAAA GAGATAGGCCCGATGG TTTCT CCACCGGGCCTAA-TC ATTTATTTTTCCAGG TERM 1985 1851820 - 1851855 + T 100 -8.3 -4.85782 | gap 1, opp_overlap 1851819 1851821 1851823, overlap 1851821 1851823 ATAGGTAGTGGAAAG AGA-TAGGCCCGATGG TTTCT CCACCGGGCCTAATCA TTTATTTTTCCAGGC TERM 1986 1851821 - 1851854 + T 91 -11.8 -3.50746 | gap 1, opp_overlap 1851819 1851821 1851823, overlap 1851820 1851823 TAGGTAGTGGAAAGA GA-TAGGCCCGATGG TTTCT CCACCGGGCCTAATC ATTTATTTTTCCAGG TERM 1987 1851854 - 1851821 - T 100 -14 -3.38522 | gap 1, opp_overlap 1851821 1851820 1851823, overlap 1851819 1851823 TAGGTAGTGGAAAGA GA-TAGGCCCGATGG TTTCT CCACCGGGCCTAATC ATTTATTTTTCCAGG TERM 1988 1851823 - 1851851 + T 100 -14.6 -2.57916 | opp_overlap 1851819 1851821 1851823, overlap 1851821 1851820 GGTAGTGGAAAGAGA TAGGCCCGATGG TTTCT CCACCGGGCCTA ATCATTTATTTTTCC TERM 1989 1851851 - 1851823 - T 100 -16.8 -3.26031 | opp_overlap 1851823 1851821 1851820, overlap 1851819 1851821 GGTAGTGGAAAGAGA TAGGCCCGATGG TTTCT CCACCGGGCCTA ATCATTTATTTTTCC YPTS_1649 1853495 - 1851909 - | integral membrane protein TerC TERM 1990 1853587 - 1853565 - H 72 -7.1 -3.91716 | gap 1 CCATTTGTTAAAGAA GTGCATCGAC CAGA GTCGAT-CAC AAAAAAATCAATCCA YPTS_1650 1853937 - 1854716 + | ferric iron reductase TERM 1991 1855351 - 1855330 - g 74 -6.5 -4.37886 | overlap 1855332 GGACCCGCGATAAAA TGGCCCTAG GTAG CCAGGGCGA CGGTATTTTCACCAG TERM 1992 1856052 - 1856071 + G 75 -7.9 -4.14874 | CTACGGATTATGGGA GCCAAAC AGCTTG GTTTGGC TTTTGAACATGTTAT YPTS_1651 1854867 - 1856414 + | pyridoxal-dependent decarboxylase TERM 1993 1857716 - 1857699 - g 71 -2.7 -4.87665 | opp_overlap 1857701, overlap 1857701 1857715 TCCGATTGAGAAAAA CATTGCT TTTC AGCAATT CAGTGCGCCATCACT YPTS_1652 1856449 - 1857747 + | lysine N6-hydroxylase/L-ornithine N5-oxygenase family protein YPTS_1653 1857747 - 1858325 + | siderophore biosynthetic enzyme TERM 1994 1860083 - 1860070 - g 73 -8.1 -3.96469 | opp_overlap 1860069 1860070 ACAGCTCAACAATAA CCAGC ACAT GCTGG ATTTAGCTGACCCTG YPTS_1654 1858322 - 1860166 + | IucA/IucC family protein YPTS_1655 1861111 - 1860293 - | ABC transporter related YPTS_1656 1862178 - 1861138 - | transport system permease protein YPTS_1657 1863205 - 1862165 - | transport system permease protein TERM 1995 1862441 - 1862403 - G 80 -6.5 -4.75472 | gap 1, overlap 1862404 1862405 GCCAGACCAATAAAA GC-GGCCGGACCCGCTAC TGCC GTCGCGGTAGCGGCCAGC AATGTTGCGCCTACT TERM 1996 1862745 - 1862733 - G 76 -9.1 -3.84246 | opp_overlap 1862731 1862733 CCGGTAAGCACCAAA CGCAC CGA GTGCG TATTCCGTTGCCCGC YPTS_1658 1864281 - 1863202 - | periplasmic binding protein TERM 1997 1864348 - 1864327 - R 71 -8.7 -3.39908 | overlap 1864325 CGTTGGCAAAAGATA CAGCCGG AAAAGTGA CCGGCTG TGAGGGTATCCAACT YPTS_1659 1866632 - 1864371 - | TonB-dependent siderophore receptor TERM 1998 1865670 - 1865709 + g 70 -7.8 -3.85698 | overlap 1865673 1865686 AGTTCGGGTTTCGGC GGATGCCCAATCCGATGC GGTG GTGGCGGATTGGGCATAA TTTGTCCGCCCACCA TERM 1999 1865673 - 1865706 + g 90 -13.9 -3.00946 | overlap 1865670 1865686 TCGGGTTTCGGCGGA TGCCCAATCCGATGC GGTG GTGGCGGATTGGGCA TAATTTGTCCGCCCA TERM 2000 1865835 - 1865847 + g 75 -3.3 -5.01811 | opp_overlap 1865836, overlap 1865836 1865838 ATCTATCTCCAAGAT ACCGT AAA ACGGG TTTTTACTTTGATCA TERM 2001 1866595 - 1866612 + g 88 -2.5 -5.70829 | opp_overlap 1866596, overlap 1866596 1866598 GTGCAGTTAAAACGC ACTCGGC TTTT GCCGTGA TTTTTTTCTAGTATT TERM 2002 1866842 - 1866872 + r 73 -7.5 -4.08767 | opp_overlap 1866835 1866842 1866845 CCGAACATCGTAAAA CTACGGTCTGACC ACGTG GGTCAGTACGTGG TTTTGAAAACATGAA YPTS_1660 1868676 - 1866862 - | IucA/IucC family protein TERM 2003 1868203 - 1868190 - G 77 -4.5 -4.83615 | gap 1 TATTCGCGATAAAAA CG-GGG TGG CCCTCG CTCATCGCTGTTTCT TERM 2004 1870316 - 1870305 - g 72 -5.8 -4.36914 | overlap 1870307 CGTTGCTTGAGAAAA CACC ACGC GGTG CGGGGGATGAAATTC YPTS_1661 1869623 - 1870513 + | UTP-glucose-1-phosphate uridylyltransferase YPTS_1662 1870597 - 1871490 + | UTP-glucose-1-phosphate uridylyltransferase TERM 2005 1871569 - 1871584 + F 89 -10.4 -4.01603 | overlap 1871564 1871581 TTGGCAGTTTAGGCC GCGCCA TTTG TGGCGC TTTGCTCTTTGCCTA YPTS_1663 1871876 - 1873285 + | 6-phosphogluconate dehydrogenase, decarboxylating TERM 2006 1873456 - 1873432 - T 100 -8.6 -5.06414 | opp_overlap 1873432 GCTGCCCAATAAAAA CGCCTCCA GTGATAAGT TGGAGGCG TTTTTTTGCCAGTGA TERM 2007 1873432 - 1873456 + T 100 -10 -5.42259 | opp_overlap 1873432 GCTGCCCAATAAAAA CGCCTCCAGT GATAA GTTGGAGGCG TTTTTTTGCCAGTGA YPTS_1664 1874099 - 1873485 - | phosphoribosyl-ATP diphosphatase YPTS_1665 1874869 - 1874093 - | imidazoleglycerol phosphate synthase, cyclase subunit TERM 2008 1874398 - 1874410 + g 74 -9.1 -3.77206 | CCCAATCTTCGGTTT GCCAC GTG GTGGC TTTGGTACGCTTCTC YPTS_1666 1875588 - 1874851 - | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase TERM 2009 1875403 - 1875423 + g 74 -9 -3.65902 | opp_overlap 1875388 CTCGCGCAGTAGTGG GATCTGGC GAGCG GCCGGATC TTTGGCTCCGGTCAG YPTS_1667 1876184 - 1875594 - | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YPTS_1668 1877251 - 1876184 - | histidinol-phosphatase YPTS_1669 1878396 - 1877248 - | histidinol-phosphate aminotransferase YPTS_1670 1879730 - 1878399 - | histidinol dehydrogenase TERM 2010 1879653 - 1879667 + g 70 -2.1 -4.93316 | gap 1, overlap 1879662 TGCATTGATGGCCGG GCGGCT CAAC AGC-GC TTTTTGCTGTTCTTC YPTS_1671 1880633 - 1879734 - | ATP phosphoribosyltransferase TERM 2011 1879770 - 1879788 + g 75 -10.2 -3.33711 | opp_overlap 1879763 1879770 1879769 1879766 CGGTAATACCAGAAT GGAGCTGG CAC CCAGCGCC TTCAATTTCTCCATG TERM 2012 1880807 - 1880856 + H 78 -10.1 -3.48395 | gap 1, opp_overlap 1880819, overlap 1880819 GTCTATAAAATGATG AGCAATAAAAAAGCCCTCGGAAGA TTA TCTTCCGAGGGCTCTCT-ACTGCG TTCTCTACGCCACCT TERM 2013 1880845 - 1880819 - H 100 -21 -5.52023 | opp_overlap 1880819 1880807 ATGAGCAATAAAAAA GCCCTCGGAAGA TTA TCTTCCGAGGGC TCTCTACTGCGTTCT TERM 2014 1880819 - 1880845 + H 100 -21 -2.96538 | opp_overlap 1880819, overlap 1880807 ATGAGCAATAAAAAA GCCCTCGGAAGA TTA TCTTCCGAGGGC TCTCTACTGCGTTCT YPTS_1672 1881339 - 1882166 + | NAD-dependent epimerase/dehydratase TERM 2015 1882243 - 1882264 + T 91 -10.2 -4.15833 | opp_overlap 1882247 GGGTTTATGCTTCAA GGGATTGC CTATTT GCAATCCC TTTTAAAATAATAAT YPTS_1673 1883129 - 1882473 - | hypothetical protein YPTS_1674 1884082 - 1883546 - | hypothetical protein TERM 2016 1883968 - 1883994 + g 71 -10.1 -2.88849 | gap 1, opp_overlap 1883957, overlap 1883963 1883969 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2017 1883969 - 1883995 + g 82 -10.1 -3.82218 | gap 1, opp_overlap 1883957, overlap 1883963 1883968 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPTS_1675 1884167 - 1884072 - | hypothetical protein YPTS_1676 1885233 - 1884238 - | inner-membrane translocator YPTS_1677 1886786 - 1885230 - | ABC transporter related YPTS_1678 1887072 - 1888163 + | iron-containing alcohol dehydrogenase TERM 2018 1888273 - 1888298 + F 100 -7.6 -6.15259 | opp_overlap 1888273 1888276 ATACGCCGAATGAAA TAGCCGACGT TTAAAC GCGTCGGTTA TTTTTTTTTGCATTC YPTS_1679 1888418 - 1888633 + | hypothetical protein YPTS_1680 1888623 - 1890014 + | amino acid permease-associated region TERM 2019 1890070 - 1890047 - T 86 -11.8 -3.19157 | gap 1, opp_overlap 1890047 CATTAAGTTTATCAA TCCGGC-ACAG TCT CTGTTGCCGGA TTTTTTGTATTCAGA TERM 2020 1890047 - 1890070 + T 100 -11.8 -5.47159 | gap 1, opp_overlap 1890047 CATTAAGTTTATCAA TCCGGC-ACAG TCT CTGTTGCCGGA TTTTTTGTATTCAGA YPTS_1681 1892726 - 1891296 - | exonuclease domain-containing protein YPTS_1682 1893019 - 1894128 + | hypothetical protein YPTS_1683 1894562 - 1894879 + | hypothetical protein TERM 2021 1894936 - 1894958 + T 100 -11.3 -5.16841 | opp_overlap 1894934 AGGGGAAAGAGAGTG GGGCTGGCA TCTAT TGTCAGCCC TTTTTATTGGTGTGC YPTS_1684 1898250 - 1895023 - | Ig domain-containing protein TERM 2022 1897102 - 1897115 + g 71 -6.7 -4.21773 | TTGTGCTGTGGCATT TGCCA CTAA TGGCA TTGTTTGTCTTGCCG TERM 2023 1898809 - 1898792 - H 76 -2.7 -5.38054 | opp_overlap 1898806, overlap 1898806 TTTTATAAATAAAAA TGACATT TTAA AAAGTCA ATCTGACATTATTCT TERM 2024 1898816 - 1898806 - H 73 -5.4 -4.65168 | opp_overlap 1898806, overlap 1898792 ATGACATTTTAAAAA GTCA ATC TGAC ATTATTCTGAAAACA TERM 2025 1898856 - 1898834 - H 75 -5.6 -4.65933 | opp_overlap 1898836, overlap 1898836 TATTCTGAAAACAAA TACACACATT AAT AATGCGTGTT CTCTATTCATTCTGG TERM 2026 1898854 - 1898836 - H 77 -8.2 -3.93868 | opp_overlap 1898836, overlap 1898834 TTCTGAAAACAAATA CACACATT AAT AATGCGTG TTCTCTATTCATTCT TERM 2027 1899875 - 1899886 + G 70 -2.2 -4.92314 | CCCGCCGTGGGGTTA GGTA TTTT TGCC TTTTTCTACCTTGAT TERM 2028 1900245 - 1900215 - g 83 -6.8 -4.9725 | overlap 1900216 1900217 ATGCCGATAGAAAAA CCCATCGCCGCAAC CCG ATTGCGACGCTGAA CCTAGTTGTCGCGGC YPTS_1685 1899290 - 1900594 + | major facilitator transporter YPTS_1686 1901025 - 1900603 - | putative thiol-disulphide oxidoreductase DCC YPTS_1687 1901052 - 1901213 + | hypothetical protein YPTS_1688 1901453 - 1902193 + | short-chain dehydrogenase/reductase SDR YPTS_1689 1902241 - 1903083 + | fumarylacetoacetate (FAA) hydrolase YPTS_1690 1903115 - 1904392 + | mandelate racemase/muconate lactonizing protein YPTS_1691 1904451 - 1904588 + | hypothetical protein TERM 2029 1904874 - 1904886 + G 71 -9.1 -3.50853 | CTTTTCGGCGAGACG CAGGC AAT GCCTG TTGTCCTTGGGCCAG YPTS_1692 1904670 - 1905815 + | FMN-dependent alpha-hydroxy acid dehydrogenase TERM 2030 1905941 - 1905912 - T 83 -10.7 -3.4678 | overlap 1905913 ACTGTGACACGAGAA GGGTTAAGGGGGG GAAG CTCCCCTTAACCG CTTGGGGTCGCGCAG TERM 2031 1905940 - 1905913 - T 95 -14.2 -2.67747 | overlap 1905912 CTGTGACACGAGAAG GGTTAAGGGGGG GAAG CTCCCCTTAACC GCTTGGGGTCGCGCA YPTS_1693 1907387 - 1906020 - | argininosuccinate synthase TERM 2032 1907917 - 1907928 + G 81 -3.6 -5.47821 | CGACAGTTTCAATAT GCTG ATTG CGGC TTTTTTTGCCTCCGT YPTS_1694 1907687 - 1909111 + | MATE efflux family protein YPTS_1695 1910479 - 1909139 - | major facilitator transporter TERM 2033 1910429 - 1910460 + g 85 -3 -5.65177 | gap 1, overlap 1910432 1910433 GACATCTTTGATTGT TAATTGCTG-CGGCT GCC AGCCATCAGCAGATA TTTTTTTATAGATGT YPTS_1696 1911396 - 1910515 - | polysaccharide deacetylase TERM 2034 1911164 - 1911174 + g 77 -8.2 -4.21141 | ACTTCGTGTCCAGCC GCGG CTA CCGC TTTCATTTGTTCAGG YPTS_1697 1911973 - 1912668 + | hypothetical protein TERM 2035 1912867 - 1912848 - g 93 -8.6 -5.06103 | AGAACGGCTAAAAAA TCACGAGC TCAG ACTCGTGA GGCAAGAGAGGCTGT TERM 2036 1912911 - 1912899 - g 91 -3.3 -5.83211 | GAGGAAAATAAAAAA GCACA ACT TGAGC GTGATAAACAGCTAA YPTS_1698 1912758 - 1913297 + | hypothetical protein TERM 2037 1913364 - 1913400 + T 79 -6.8 -4.66537 | gap 1, opp_overlap 1913371 1913377 1913378, overlap 1913367 AATCTTTACAAATAC TCATAGATGAAAAGTCC CTCA GGGCTTTTCAT-TAAGA TTTTATGTTCAGCCA TERM 2038 1913648 - 1913625 - T 100 -11 -4.81851 | opp_overlap 1913625 ACTGAAATGCAAAAA CCCTGCTTAG TTAC CTAGGCAGGG TTCTTTAATTTGGCT TERM 2039 1913625 - 1913648 + T 100 -13.2 -4.15998 | opp_overlap 1913625 ACTGAAATGCAAAAA CCCTGCTTAG TTAC CTAGGCAGGG TTCTTTAATTTGGCT YPTS_1699 1913800 - 1913639 - | hypothetical protein TERM 2040 1913988 - 1914006 + H 100 -13.2 -4.01078 | CCAGGGGGTAATCTG CTCTCCTG ATT CAGGAGAG TTTATGGTCACTTTT TERM 2041 1914059 - 1914044 - g 71 -4.6 -4.56914 | overlap 1914045 TTATGGAAATTAAAA TCCTGC ACAA GCAGGG AATGAGTAGCCGGGC YPTS_1700 1914010 - 1915032 + | integrase catalytic region TERM 2042 1915113 - 1915099 - g 82 -11.4 -3.3506 | overlap 1915090 TGGAAAGCCTTATAA GCGCAG CGC CTGCGC TGTCACAACAGGCAG YPTS_1701 1915032 - 1915811 + | IstB ATP binding domain-containing protein YPTS_1702 1915968 - 1915855 - | hypothetical protein TERM 2043 1915941 - 1915957 + g 71 -4.4 -4.70169 | CATAAAGCATTTCAA GCTCAT TCCCT GTGAGC TTTTCTTCCATATGC TERM 2044 1916203 - 1916178 - R 100 -10.5 -4.34402 | TGGTGCATATTAAAA TGTGCGGAG CTATTCTC CTCCGCACA TACAGATTTAACGTC YPTS_1703 1916420 - 1916211 - | TraR/DksA family transcriptional regulator YPTS_1704 1916910 - 1916410 - | hypothetical protein YPTS_1705 1917158 - 1916976 - | hypothetical protein YPTS_1706 1917365 - 1917180 - | phage transcriptional regulator, AlpA TERM 2045 1917443 - 1917476 + r 100 -15.5 -3.31322 | opp_overlap 1917434 1917450 1917464, overlap 1917450 1917453 GAGAAAGCTGGTGAG CCCTAAATAAGGGAT GCAA AACCCTTATTTAGGG TTGTCGGCCATTACA YPTS_1707 1918431 - 1917505 - | hypothetical protein TERM 2046 1917724 - 1917737 + g 95 -3.8 -5.72616 | opp_overlap 1917724 ACGGGAAGGTGAAAT GGGA TGACTC TCCC TTTTTTTGTATAAAT TERM 2047 1917890 - 1917908 + g 77 -4.6 -4.96501 | ACATCTAATGCTGTG TTTTCAGG TAG TCTGGAAA TTTGTTTTTCTACGC TERM 2048 1918402 - 1918419 + g 80 -2.7 -5.44721 | TGACATATAATGAGT TATAAGC AATG GCTGATA TTTTTTTGACATAAT TERM 2049 1919272 - 1919292 + r 93 -11.2 -4.15565 | opp_overlap 1919272 ACTAGTGGTGTAAAA GGGATACC TTTTC GGTATCCC TTTTACAATAATCAG TERM 2050 1919292 - 1919272 - R 93 -11.2 -4.08945 | opp_overlap 1919272 ACTAGTGGTGTAAAA GGGATACC TTTTC GGTATCCC TTTTACAATAATCAG YPTS_1708 1921325 - 1919304 - | TonB-dependent siderophore receptor TERM 2051 1921124 - 1921143 + g 81 -12.8 -2.60244 | overlap 1921120 CTCTGGGGAGTTTGT CGCTGGCG GTGA CGCCGGCG TCGCTTAATTCCGGC TERM 2052 1921409 - 1921448 + r 90 -11.5 -3.72051 | overlap 1921410 1921413 1921413 ATTTCTAATAGTGGT GCTACCCGAAACGGGTT TATTTC AACCTGTTTCGGGTCGG TTTGCGCTTATTGGG TERM 2053 1921410 - 1921447 + r 100 -15 -2.82749 | overlap 1921409 1921413 1921413 TTTCTAATAGTGGTG CTACCCGAAACGGGTT TATTTC AACCTGTTTCGGGTCG GTTTGCGCTTATTGG TERM 2054 1921413 - 1921444 + r 100 -15.3 -2.66593 | overlap 1921410 1921409 1921413 CTAATAGTGGTGCTA CCCGAAACGGGTT TATTTC AACCTGTTTCGGG TCGGTTTGCGCTTAT TERM 2055 1921413 - 1921423 + r 87 -8.2 -4.43208 | overlap 1921413 1921410 1921409 CTAATAGTGGTGCTA CCCG AAA CGGG TTTATTTCAACCTGT TERM 2056 1921478 - 1921503 + r 91 -6.7 -5.46276 | opp_overlap 1921478, overlap 1921480 GCAGAATGGCGATAA CGGTCGACGGC GAGA GCCGTCAGGCG TTTTTTGTCTATCTT TERM 2057 1921480 - 1921502 + r 72 -7.7 -3.85325 | gap 1, opp_overlap 1921478, overlap 1921478 AGAATGGCGATAACG GTC-GACGGC GAGA GCCGTCAGGC GTTTTTTGTCTATCT YPTS_1709 1923033 - 1921456 - | AMP-dependent synthetase and ligase TERM 2058 1922098 - 1922088 - G 71 -6.8 -4.2349 | overlap 1922065 CCGCCATACCGAAAA CCTG TTG CAGG GTACAGTCAAAGGTG TERM 2059 1922173 - 1922191 + g 72 -10.3 -3.04461 | opp_overlap 1922169, overlap 1922175 TGCCTGAATGACGCG CAGCGAC GAAAG GTCGCTG TCTTCCCACTCCCTG YPTS_1710 1923840 - 1923037 - | thioesterase YPTS_1711 1924937 - 1923837 - | thiazolinyl imide reductase TERM 2060 1924439 - 1924429 - G 73 -5.4 -4.48713 | GCCAGCAACAACAAA TCCA GAG TGGA GTAGAGCAACTGTCG YPTS_1712 1934425 - 1924934 - | Beta-ketoacyl synthase TERM 2061 1925217 - 1925237 + g 71 -7.5 -4.07885 | overlap 1925218 TTGTCGAGCCACGTT TCTGCCGCT TGC AGCGTCAGG TTTTGCGACACCATA TERM 2062 1928396 - 1928410 + g 83 -11.4 -3.61398 | ATGCCGCCGTTTTTC CAGCGC GAT GCGCTG TTCTTCCGGGGAAAG TERM 2063 1929027 - 1929037 + g 70 -2.4 -4.9725 | overlap 1929028 GCAGGAGGAATGACC GGCG TTG CGGC TTTTTCTGTGGCGCT TERM 2064 1929190 - 1929210 + g 79 -11.1 -3.55444 | overlap 1929191 ACGCGCCCATACCTC GGCTGGCGA GCG TCGCCAGCA TTTCCGGCGTGGCCG TERM 2065 1929191 - 1929209 + g 90 -14.6 -2.73124 | overlap 1929190 CGCGCCCATACCTCG GCTGGCGA GCG TCGCCAGC ATTTCCGGCGTGGCC TERM 2066 1929467 - 1929424 - G 86 -13.2 -3.02144 | gap 1 GCAGGGTTTGCAACA GCTGGCTTGCCGCCTGCGC TTTTACC GCGAAAACGGCA-GCCAGC TGGTGGTCATCAAGC TERM 2067 1929618 - 1929601 - G 72 -11.3 -2.67747 | overlap 1929600 CGCCCACATCACAAC GGCAGAC GCGC GTCTGCC CGCCCTCCACGTCGC TERM 2068 1929655 - 1929685 + g 73 -3.2 -4.96848 | gap 1, overlap 1929657 1929667 ATGACTCATCCACGC GCGGCGCCA-GCA GGGCGA TGCGTCGCGCCCC TTTTTCTCTGAGCCA TERM 2069 1932004 - 1931992 - G 77 -4.7 -4.84359 | CCATCTCCAGAAAAA CGCGG GCG CCGAG CTGATGCGCCACCTG TERM 2070 1932829 - 1932855 + g 93 -13.6 -3.64682 | CCCCCGATTTCTCAC CGGCCCAGGCGC TGA GCGCCTCGGCGG TTTCACGGTTTAATG TERM 2071 1932985 - 1933026 + g 86 -7.9 -4.84761 | gap 1, opp_overlap 1932970 1932969, overlap 1932988 1932989 CCGTCGCCAGCCGCC GCAACGCGCTGTCGCT-GGC GGC GCTGAGCAGCAGCGCGGTAC TTTTTCTGCCGCTAT TERM 2072 1932989 - 1933022 + g 75 -11.7 -2.58667 | gap 1, opp_overlap 1932970 1932969, overlap 1932988 1932985 CGCCAGCCGCCGCAA CGCGCTGTCGCT-GGC GGC GCTGAGCAGCAGCGCG GTACTTTTTCTGCCG TERM 2073 1933501 - 1933541 + g 81 -12.5 -2.93073 | overlap 1933509 1933513 TGACTGCCTGTTGCC CTGCGACGGAAGGGGCGGT ATA GCCGACCTTTCTGTTGCCG TCGTTGTTGACCGCG TERM 2074 1934490 - 1934460 - R 78 -10.5 -3.33711 | gap 1, overlap 1934455 GATTCACAAAGTCAA TGGAACGCCAT-GC GTTC GCGATGGCGTTCCG GGGAAAATCAGTTTG YPTS_1713 1940620 - 1934513 - | amino acid adenylation domain-containing protein TERM 2075 1934813 - 1934855 + g 75 -10.5 -3.34398 | gap 1, overlap 1934811 GTGTGGCTGAGAGTG CTCAGGGCATACGCGCGGTG AGCG CTCTGCGCAT-TGCCCTGCG TGTTTAACGGGAGGC TERM 2076 1934884 - 1934901 + g 71 -8.3 -3.78775 | GCACCAGCGCGGCGA GCGGCAG TTGC CAGCCGC TTTCATCCTCGGCCA TERM 2077 1935442 - 1935409 - G 74 -9.5 -3.60525 | overlap 1935430 1935433 TCCATGCAGAGAGAA CCGTTGACCACACCG ACAA CAGTACGGCCGACGG GGTGAGATGGGCGTC TERM 2078 1935450 - 1935466 + g 88 -7.2 -5.0133 | opp_overlap 1935433 1935430, overlap 1935451 GCCGACGGGGTGAGA TGGGCG TCAGC CGCCCG TTTTTTCAGCCGATG TERM 2079 1936359 - 1936387 + g 78 -6 -4.70659 | gap 1, opp_overlap 1936361 1936363, overlap 1936362 1936363 ACATTGCCAGTTGAT AAGAGTTGCTGCC AGAG GGCGGCAAC-CTG TTTTTCAATGTCGCC TERM 2080 1936362 - 1936385 + g 76 -8.8 -3.96999 | opp_overlap 1936361 1936363, overlap 1936359 1936363 TTGCCAGTTGATAAG AGTTGCTGCC AGAG GGCGGCAACC TGTTTTTCAATGTCG TERM 2081 1936384 - 1936363 - G 73 -10.1 -3.23393 | opp_overlap 1936362 1936359 1936363, overlap 1936361 TGCCAGTTGATAAGA GTTGCTGCC AGAG GGCGGCAAC CTGTTTTTCAATGTC TERM 2082 1936363 - 1936384 + g 81 -12.3 -2.97476 | opp_overlap 1936363 1936361, overlap 1936362 1936359 TGCCAGTTGATAAGA GTTGCTGCC AGAG GGCGGCAAC CTGTTTTTCAATGTC TERM 2083 1937917 - 1937935 + g 73 -10.2 -3.14132 | CACCCGGCACCCAGT CAGGGCAG TCC CGGCCCTG TTCATCCACCACCCG TERM 2084 1938705 - 1938685 - G 71 -8.2 -3.6682 | overlap 1938697 GCTGATCCAGCGAAA CCGGAACG TAAAC CGCCCCGG CCAGCAGGACGGCCA TERM 2085 1938717 - 1938697 - G 71 -8.2 -3.77241 | overlap 1938685 AAACCGGAACGTAAA CCGCCCCG GCCAG CAGGACGG CCAGAACCGCAACAA TERM 2086 1938802 - 1938821 + g 72 -10.7 -2.69799 | opp_overlap 1938800, overlap 1938800 CGCACTCGATTAACC TGCCCGC GCAACG GCGGGCA TAGTCTGTCAGCTCA TERM 2087 1939546 - 1939536 - G 70 -2.4 -4.86001 | AGCACGGCAGAAAAA CAGG TCG CCAG CGCCATTGTCGGCGT TERM 2088 1940696 - 1940727 + r 100 -15.2 -3.14132 | opp_overlap 1940687, overlap 1940696 1940703 AACAATTGGATGCTA CCCGAAACGGGTTT ATTT ATGCCCGTTTCGGG TTGGTAACAGGCGGA TERM 2089 1940696 - 1940706 + r 87 -8.2 -4.55697 | opp_overlap 1940687, overlap 1940696 1940703 AACAATTGGATGCTA CCCG AAA CGGG TTTATTTATGCCCGT TERM 2090 1940778 - 1940748 - R 100 -21.3 -3.93658 | opp_overlap 1940752 AACAGGCGGAAAGAA CAGAGGCCCGGAT GGGGT ATCCGGGCCTCTG TCAGGGAGGAGTTTA TERM 2091 1940752 - 1940774 + r 100 -15.6 -2.87132 | opp_overlap 1940748 GGCGGAAAGAACAGA GGCCCGGATG GGG TATCCGGGCC TCTGTCAGGGAGGAG YPTS_1714 1941770 - 1940811 - | AraC family transcriptional regulator TERM 2092 1942062 - 1942072 + G 77 -4.6 -4.85599 | GGCATTAACCAGCCT GGGG GCG CTCC TTTTTCTGGCGTGGA YPTS_1715 1942027 - 1943739 + | ABC transporter related TERM 2093 1943801 - 1943836 + G 88 -13.4 -3.14881 | gap 1 TCCAGCGTTGGCAGT CAG-GCCAGGATGCTGC GAC GCAGTATGCTGGCGCTG TTGCTGGCGGCATTC TERM 2094 1944344 - 1944312 - g 73 -8.5 -3.86346 | gap 1, overlap 1944313 1944316 CGATGCGGCGACAAA TGCAGACGCTGGGG GAAGCG CACCAGCGTCTG-A GCGGCGATATCGTTG TERM 2095 1944344 - 1944313 - g 71 -10.1 -2.91593 | overlap 1944312 1944316 GATGCGGCGACAAAT GCAGACGCTGGGG GAAGCG CACCAGCGTCTGA GCGGCGATATCGTTG YPTS_1716 1943726 - 1945528 + | ABC transporter related YPTS_1717 1945521 - 1946801 + | major facilitator transporter YPTS_1718 1946829 - 1948133 + | chorismate binding-like protein TERM 2096 1948268 - 1948296 + T 74 -10.3 -2.72829 | opp_overlap 1948273, overlap 1948267 1948273 TGATAAAAGTCTATA TAGAACCACCTCC TGT GGAGGTGGTGGTA ATTTGCCAGAGTGTG TERM 2097 1948291 - 1948273 - T 100 -14.6 -3.60814 | opp_overlap 1948273 1948268 1948267 AAAGTCTATATAGAA CCACCTCC TGT GGAGGTGG TGGTAATTTGCCAGA TERM 2098 1948273 - 1948294 + T 73 -10.1 -2.90813 | opp_overlap 1948273, overlap 1948268 1948267 AAAGTCTATATAGAA CCACCTCCT GTGG AGGTGGTGG TAATTTGCCAGAGTG TERM 2099 1948742 - 1948754 + T 70 -5.5 -4.56597 | opp_overlap 1948742, overlap 1948737 GAGAGGGGGACGATA TGCGG CAT TCGCA TTTTTGCCCCGCGGC TERM 2100 1950213 - 1950156 - T 82 -10.2 -3.68988 | gap 3, opp_overlap 1950158 1950159 1950171, overlap 1950157 1950171 GGCGAGGTAACAGAA TCCTCAGCGCCTAAATACCGTCTTGCCAA CTA TCGGCAAG-CGGTATTTAGGC-C-GCAAA TGGTTTTCCCGACTT TERM 2101 1950215 - 1950157 - T 100 -16.3 -2.81072 | opp_overlap 1950158 1950159 1950171, overlap 1950156 1950171 GCGAGGTAACAGAAT CCTCAGC-GCCTAAATACCGTCTTGCCAA CTA TCGGCAAG-CGGTATTTAGGCCGCAAATG GTTTTCCCGACTTCA TERM 2102 1950159 - 1950213 + T 95 -13.1 -3.08776 | opp_overlap 1950156 1950157 1950171, overlap 1950158 1950171 GAGGTAACAGAATCC TCAGCG-CCTAAATACCGTCTTGCCAA CTA TCGGCAAG-CGGTATTTAGGCCGCAAA TGGTTTTCCCGACTT TERM 2103 1950171 - 1950200 + T 78 -10.1 -3.53224 | gap 1, opp_overlap 1950156 1950157 1950171, overlap 1950159 1950158 TCCTCAGCGCCTAAA TACCGTCTTGCCAA CTA TCGGCAAG-CGGTA TTTAGGCCGCAAATG TERM 2104 1950200 - 1950171 - T 100 -12.3 -3.55444 | gap 1, opp_overlap 1950171 1950159 1950158, overlap 1950156 1950157 TCCTCAGCGCCTAAA TACCGTCTTGCCAA CTA TCGGCAAG-CGGTA TTTAGGCCGCAAATG YPTS_1721 1950896 - 1950267 - | two component LuxR family transcriptional regulator TERM 2105 1951193 - 1951177 - R 73 -8.7 -3.40558 | overlap 1951175 TATATATTCCAAACA TCCGTGG CAA CCACAGA GAGATTTCCGGAATA YPTS_1722 1952446 - 1951154 - | TRAP dicarboxylate transporter, DctM subunit YPTS_1723 1952972 - 1952466 - | tripartite ATP-independent periplasmic transporter DctQ TERM 2106 1952805 - 1952793 - G 75 -7.7 -4.15044 | CGCTGCGCCAATAAA GGTGA ACG TCACC ATACATAAAATAGCG TERM 2107 1953085 - 1953059 - R 75 -10.3 -2.73875 | overlap 1953056 CGTTGGGTAATATCA GCGGTATTAAA AATAA TTCAATACCGC CGGATGGATGTTATT YPTS_1724 1954088 - 1953096 - | TRAP dicarboxylate transporter, DctP subunit YPTS_1725 1954611 - 1955351 + | 4'-phosphopantetheinyl transferase YPTS_1726 1955760 - 1955629 - | hypothetical protein TERM 2108 1955771 - 1955752 - G 83 -12.8 -2.94322 | opp_overlap 1955748 1955745, overlap 1955749 ATTGGACGTAAAGTA GGCCGCCA TAAA CGGCGGCC TGAGGTTAATTTACG YPTS_1727 1957903 - 1955777 - | glycoside hydrolase clan GH-D YPTS_1728 1959288 - 1957981 - | major facilitator superfamily oligosaccharide/H+ symporter TERM 2109 1959431 - 1959467 + H 81 -11.7 -2.87881 | opp_overlap 1959431, overlap 1959431 CGGCATTAGAGTAGA TCCGAAACGTTTCGGGT TTA AATCTAAACGTTTCGGA TGTGTGACGAACTTA TERM 2110 1959467 - 1959431 - H 70 -9.6 -2.87468 | opp_overlap 1959431 1959431 CGGCATTAGAGTAGA TCCGAAACGTTTCG GGTTTAAAT CTAAACGTTTCGGA TGTGTGACGAACTTA TERM 2111 1959854 - 1959870 + G 75 -5.9 -4.60487 | CATCACGTCCACGAG TGTTGAA TAA TTCGACA TTTTTGGAAATGATA TERM 2112 1960307 - 1960297 - g 71 -4.6 -4.59773 | GGGTATCTGCAAAAA GCGG ATC CCAC TCGTCCTGGCGGTTA YPTS_1729 1959643 - 1960659 + | LacI family transcription regulator TERM 2113 1960772 - 1960805 + T 71 -9.7 -2.66748 | opp_overlap 1960777, overlap 1960777 CAGTGATAGAAAAGC AAAAATCCCGCTTAG TTTC CTAAACGGGATTTTC TAAATTTGGCTCCTC TERM 2114 1960800 - 1960777 - T 100 -11.8 -5.15526 | opp_overlap 1960772 1960777 ATAGAAAAGCAAAAA TCCCGCTTAG TTTC CTAAACGGGA TTTTCTAAATTTGGC TERM 2115 1960777 - 1960800 + T 95 -9.6 -4.51196 | opp_overlap 1960777, overlap 1960772 ATAGAAAAGCAAAAA TCCCGCTTAG TTTC CTAAACGGGA TTTTCTAAATTTGGC YPTS_1730 1961877 - 1961065 - | hypothetical protein TERM 2116 1961826 - 1961847 + g 75 -5.8 -4.62772 | overlap 1961827 GTGCCTCATGCCATT GCGCAAGC ATCTCC GCTTGCGG TTTATTTGCTTTCCA TERM 2117 1962221 - 1962240 + r 76 -9.3 -3.49858 | opp_overlap 1962215, overlap 1962232 CTGAACTTATCAGCA GCCATGG CATTCA CCATGGC TTATGGTGTGCTTGA YPTS_1731 1962551 - 1962267 - | YCII-related TERM 2118 1962721 - 1962735 + r 75 -5.6 -4.71318 | GAGGAGCAGGGAAGG CCGCTG CTC CAGAGG TTGTTTTTTGATCTT YPTS_1732 1963639 - 1962788 - | protein of unknown function RIO1 YPTS_1733 1965460 - 1963742 - | ABC transporter related YPTS_1734 1965925 - 1966089 + | hypothetical protein YPTS_1735 1966116 - 1966280 + | hypothetical protein YPTS_1736 1966748 - 1966362 - | AraC family transcriptional regulator TERM 2119 1966679 - 1966693 + g 71 -9.2 -3.56594 | opp_overlap 1966679, overlap 1966690 CTTCAAGATAGATGA CCCGCC CTA GGTGGG TTTCGACCCATTTAC TERM 2120 1966855 - 1966881 + H 71 -6.6 -4.14243 | opp_overlap 1966855 AATGTGCGGTAAAGA CTTTTTGGCCGA GGT TTGGCAAAAGAG TTTTCAAGTGCCATA TERM 2121 1967017 - 1967027 + G 87 -5.4 -5.42259 | TCTGATAGCGGTTGT TGGT GTA ACCA TTTTTTTAAAGATGC YPTS_1737 1966979 - 1967092 + | hypothetical protein YPTS_1738 1967303 - 1967542 + | hypothetical protein YPTS_1739 1967866 - 1967633 - | hypothetical protein YPTS_1740 1968449 - 1968733 + | hypothetical protein TERM 2122 1968745 - 1968774 + F 95 -12.9 -3.10071 | opp_overlap 1968736 1968760, overlap 1968772 ATAAACGTGTCCCGA TGCTGGCACTACC AACA GGCAGTGTCAGCA TGTTACCTGCAATTT YPTS_1741 1968996 - 1969295 + | hypothetical protein YPTS_1742 1969404 - 1969649 + | hypothetical protein YPTS_1743 1969886 - 1971259 + | amino acid permease-associated region TERM 2123 1971493 - 1971529 + T 89 -6.8 -5.28481 | opp_overlap 1971495, overlap 1971495 AATTCGCCCTCAACC AAGCATATAACCAT TTTAATATT ATGGTTATATGCTG TTTTTTAGTTAAATA TERM 2124 1971495 - 1971527 + T 88 -9.4 -4.26777 | opp_overlap 1971495, overlap 1971493 TTCGCCCTCAACCAA GCATATAACCAT TTTAATATT ATGGTTATATGC TGTTTTTTAGTTAAA TERM 2125 1971527 - 1971495 - T 74 -9.4 -3.33696 | opp_overlap 1971493 1971495 TTCGCCCTCAACCAA GCATATAACCAT TTTAATATT ATGGTTATATGC TGTTTTTTAGTTAAA YPTS_1744 1972163 - 1971555 - | anti peptide resistance and lipid A acylation PagP YPTS_1745 1972728 - 1972564 - | hypothetical protein YPTS_1746 1973165 - 1973281 + | hypothetical protein YPTS_1747 1973324 - 1973533 + | cold-shock DNA-binding domain-containing protein TERM 2126 1973545 - 1973576 + T 86 -11.7 -3.34398 | opp_overlap 1973534 1973553, overlap 1973553 CTAATCAGCGTTTGC TGTAAAAACCCGC CTTTGT GCGGGTTTTTTCA TATTTGGGGAAACCC TERM 2127 1973568 - 1973553 - T 78 -7.5 -4.56597 | opp_overlap 1973545 1973553 CGTTTGCTGTAAAAA CCCGC CTTTGT GCGGG TTTTTTCATATTTGG TERM 2128 1973553 - 1973568 + T 91 -7.5 -5.32699 | opp_overlap 1973553, overlap 1973545 CGTTTGCTGTAAAAA CCCGC CTTTGT GCGGG TTTTTTCATATTTGG YPTS_1748 1974379 - 1973624 - | hypothetical protein TERM 2129 1974737 - 1974751 + H 76 -7.8 -4.22858 | overlap 1974734 TAACGCCGCATCTGC CCGCTA TCT TGGCGG TTATTTATCTGTTAT YPTS_1749 1974780 - 1975619 + | methyltransferase type 11 YPTS_1750 1976119 - 1975841 - | hypothetical protein TERM 2130 1976336 - 1976305 - R 100 -9.5 -4.98255 | overlap 1976307 GGCCAATCATAAAAA CATTGCAGGTGAC ATGATA GCCACCCGCAATA TACCTCAAGAGGTGA TERM 2131 1976334 - 1976307 - R 88 -9.9 -4.11322 | overlap 1976305 CCAATCATAAAAACA TTGCAGGTGAC ATGATA GCCACCCGCAA TATACCTCAAGAGGT YPTS_1751 1978422 - 1976341 - | diguanylate cyclase with PAS/PAC sensor TERM 2132 1977249 - 1977267 + g 71 -6.6 -4.22214 | GGGCAGCTTCACTGG CGCGCAGG GCA TCTTCGCG TTGTTTTCGCTCACT TERM 2133 1978828 - 1978806 - g 80 -12 -2.82623 | opp_overlap 1978804 1978803 1978807, overlap 1978803 CTCTCTCCATAAGTA CGGAGCCGAA ACG TTCGGCTCCT CGTCTTTTGTGCGTC TERM 2134 1978807 - 1978827 + G 100 -15.5 -2.98789 | opp_overlap 1978806 1978803, overlap 1978804 1978803 TCTCTCCATAAGTAC GGAGCCGAA ACG TTCGGCTCC TCGTCTTTTGTGCGT TERM 2135 1979220 - 1979194 - g 72 -5.8 -4.36914 | overlap 1979179 1979177 1979195 CGCTTCGGTACAAAA CGTGCGGGGTTA TGG TAACCCATCACA GAATTACCGTATTCG TERM 2136 1980730 - 1980720 - g 74 -6.8 -4.33165 | CTAAACTGACTAAAA CCCA AAA TGGG ACGAACAACGGTAAC YPTS_1752 1978766 - 1981072 + | TonB-dependent siderophore receptor TERM 2137 1981156 - 1981194 + T 100 -24.8 -3.00946 | opp_overlap 1981143 1981160, overlap 1981160 AACGGGTGCTTTACT GAAATCCCCCGGCGATTT GAT ATATCGCCGGGGGATTTC TCATTTATCGCGCAG TERM 2138 1981160 - 1981190 + T 100 -19.8 -4.17701 | opp_overlap 1981143 1981160, overlap 1981156 GGTGCTTTACTGAAA TCCCCCGGCGATTT GAT ATATCGCCGGGGGA TTTCTCATTTATCGC TERM 2139 1981190 - 1981160 - T 100 -19.8 -3.64703 | opp_overlap 1981160 1981156, overlap 1981143 GGTGCTTTACTGAAA TCCCCCGGCGATTT GAT ATATCGCCGGGGGA TTTCTCATTTATCGC YPTS_1753 1981818 - 1981249 - | hypothetical protein TERM 2140 1981512 - 1981523 + g 76 -2.2 -5.24449 | CCAACACCCAAAAAC TGTG ACTG CGCA TTTTTTCCGTTTCTG YPTS_1754 1982708 - 1982247 - | hypothetical protein TERM 2141 1982885 - 1982862 - R 100 -8.8 -4.89567 | opp_overlap 1982865, overlap 1982865 GTCTAAAAGATAAAA TAACCGGGAG CAAG CCCCCGGTTT TGGATGAAGATAATC TERM 2142 1982865 - 1982882 + r 79 -8.3 -4.18494 | opp_overlap 1982865 1982862 TAAAAGATAAAATAA CCGGGAG CAAG CCCCCGG TTTTGGATGAAGATA TERM 2143 1982882 - 1982865 - R 100 -10.5 -4.52747 | opp_overlap 1982865, overlap 1982862 TAAAAGATAAAATAA CCGGGAG CAAG CCCCCGG TTTTGGATGAAGATA YPTS_1755 1983786 - 1982908 - | PTS system mannose/fructose/sorbose family IID subunit TERM 2144 1983427 - 1983394 - G 73 -9.5 -3.33162 | overlap 1983370 TACGGTACCCCAGAA GATCGGGTCACCGAC ACCG GCCAGTGGCCCCATC AGACCCACTTTAATG YPTS_1756 1984599 - 1983802 - | PTS system mannose/fructose/sorbose family IIC subunit YPTS_1757 1985665 - 1984691 - | PTS system mannose/fructose/sorbose family IIB subunit YPTS_1758 1985976 - 1986074 + | hypothetical protein TERM 2145 1986621 - 1986635 + G 71 -6.4 -4.24384 | overlap 1986616 CGTCGGTGCGTTTAA TTTCGC TGG GCGAGA TTTGATTTTGCTGGT YPTS_1759 1986376 - 1987920 + | integral membrane protein TerC TERM 2146 1987934 - 1987961 + T 100 -17 -3.62046 | opp_overlap 1987928 AAGCAGAGAGTGGAA CCTCAGGGGCGC TTCG GCTCCCCTGAGG TTATTGACAACGTAC YPTS_1760 1988489 - 1988022 - | MarR family transcriptional regulator TERM 2147 1988447 - 1988437 - G 85 -4.6 -5.42862 | ATAGGCCGAAAAAAA GCCA TAG CGGC TTCACGAGCCTGCAA YPTS_1761 1988877 - 1989509 + | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit YPTS_1762 1989506 - 1990270 + | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit TERM 2148 1991098 - 1991116 + G 73 -2.3 -5.06414 | CTCAATGGTGAACGT TGCACGG CGGGT TCGCGCA TTTTTATTCAAGAGA YPTS_1763 1990267 - 1991733 + | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YPTS_1764 1991852 - 1992709 + | 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPTS_1765 1992734 - 1993132 + | 5-carboxymethyl-2-hydroxymuconate isomerase TERM 2149 1993739 - 1993727 - g 73 -10.5 -3.10344 | opp_overlap 1993734 GCGTGATTGAAGAGA GCGGC GTT GCCGC GGCGGTATTGAATCA YPTS_1766 1993126 - 1993929 + | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase TERM 2150 1994005 - 1993988 - g 90 -2.7 -5.72207 | CTGAAAGCAAAAAAA CCACAAA TTGG CTTATGG CTAGGTTTGTGTAGC YPTS_1767 1993940 - 1994746 + | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 2151 1994840 - 1994825 - g 75 -3.2 -5.06414 | GCCGGTCAATAAAAA CACACC ATTA AGTGCG CAGCAGCAGTCCGTC YPTS_1768 1994772 - 1996139 + | 4-hydroxyphenylacetate transporter YPTS_1769 1996207 - 1997769 + | 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit YPTS_1770 1997790 - 1998287 + | 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit TERM 2152 1998328 - 1998289 - T 100 -21 -3.55444 | opp_overlap 1998289 CGGTGATGGTGTAAA CCTCTAATGCCCGTCA TATTTAAC TGACGGGCATTAGAGG TTGTTGACAACGTGC TERM 2153 1998289 - 1998328 + T 100 -21 -3.62046 | opp_overlap 1998289 CGGTGATGGTGTAAA CCTCTAATGCCCGTCA TATTTAAC TGACGGGCATTAGAGG TTGTTGACAACGTGC TERM 2154 1998416 - 1998398 - T 100 -8.8 -4.82901 | opp_overlap 1998412 TTCCCTGCATAAAAA TAGCCCTC CCT GGGGGCTA GCCGCGCCATCCTTT TERM 2155 1998585 - 1998567 - T 78 -2.4 -5.47218 | overlap 1998571 TGTCAGCGAAAAAAA TCAAGTAC ACT GCACTTTA ATCGCCAGGCCACCA YPTS_1771 1999931 - 1998567 - | L-serine dehydratase 1 TERM 2156 1999498 - 1999486 - G 73 -5.5 -4.56607 | opp_overlap 1999490, overlap 1999490 TCATCAACGATAAAA CCACC GCC GATGG AGTAGTATGTTTTGC TERM 2157 2000228 - 2000248 + r 70 -7.5 -3.79993 | TTCTAGTTATTCAGC TACGGGGTC AAT GGCCCGGTA TATTTTGGTCTCTAA TERM 2158 2000615 - 2000630 + r 100 -11.8 -3.92373 | opp_overlap 2000615 TGTCACAGGTTAACA GCCGCC AAAT GGCGGC TTTATGAGTCAAATA TERM 2159 2000630 - 2000615 - R 86 -11.8 -3.07962 | opp_overlap 2000615 TGTCACAGGTTAACA GCCGCC AAAT GGCGGC TTTATGAGTCAAATA YPTS_1772 2001238 - 2000639 - | NUDIX hydrolase YPTS_1773 2002611 - 2001235 - | para-aminobenzoate synthase, subunit I YPTS_1774 2002776 - 2003033 + | hypothetical protein TERM 2160 2003123 - 2003096 - T 89 -7.1 -5.04597 | opp_overlap 2003096 2003100 ATTGATAGATAAAAA TAAACCCGC TGGCTGAATG GCGGGTTTA TTTATTTGCTAGCGT TERM 2161 2003096 - 2003123 + T 87 -8.5 -4.49958 | opp_overlap 2003096, overlap 2003100 ATTGATAGATAAAAA TAAACCCGCTG GCTGAA TGGCGGGTTTA TTTATTTGCTAGCGT TERM 2162 2003100 - 2003119 + T 74 -4.9 -4.80736 | opp_overlap 2003096, overlap 2003096 ATAGATAAAAATAAA CCCGCTG GCTGAA TGGCGGG TTTATTTATTTGCTA YPTS_1775 2004340 - 2003159 - | phosphoribosylglycinamide formyltransferase 2 TERM 2163 2003299 - 2003339 + g 73 -9.8 -3.37975 | gap 1, overlap 2003320 ATAACCGAATCTGTG TATCGCCTATC-AGGGCAG TTTC CAGCCCGCGATAGGTGATA TTCTGGCTGGTCAGT YPTS_1776 2004653 - 2006035 + | DEAD/DEAH box helicase domain-containing protein YPTS_1777 2006129 - 2006449 + | YebG family protein YPTS_1778 2006489 - 2006797 + | hypothetical protein YPTS_1779 2006889 - 2007314 + | hypothetical protein TERM 2164 2007387 - 2007407 + F 72 -9.7 -2.83112 | opp_overlap 2007377 AATAACCCGCTATGT TTGAGGGCA TAT TGCCCTCCA TCTGGTCAATTCAAT YPTS_1780 2007624 - 2009675 + | peptidase S9 prolyl oligopeptidase TERM 2165 2009936 - 2009919 - T 100 -9.8 -5.66229 | opp_overlap 2009919 ATGAACAATAAAAAA CCCGCC GATAAT GGCGGG TTAACTCACGAAACG TERM 2166 2009919 - 2009936 + T 76 -10.5 -3.05384 | opp_overlap 2009919 ATGAACAATAAAAAA CCCGCCG ATAA TGGCGGG TTAACTCACGAAACG YPTS_1781 2010075 - 2009962 - | hypothetical protein YPTS_1782 2010397 - 2011347 + | proline iminopeptidase YPTS_1783 2011637 - 2011407 - | DNA polymerase II beta subunit TERM 2167 2012191 - 2012172 - g 70 -2.2 -5.00616 | gap 1, opp_overlap 2012157, overlap 2012175 TGCCTTTTTAAAAAA GCAT-TCTC AAG AAGAAATGC AACATATGGAACGTT YPTS_1784 2012038 - 2012547 + | Ferritin Dps family protein TERM 2168 2012568 - 2012596 + F 82 -8.1 -4.47456 | ATTGAGAAAATATTC GCCGCGGTACT ATTATTG GGTACGGCGGC TTTGTTGTTGCCTAT TERM 2169 2012619 - 2012631 + F 75 -3.3 -5.18715 | overlap 2012620 TTGCCTATCCCTCCC CGCGA TCC TCGCC TTTTCTTGTTTTTCT YPTS_1785 2012926 - 2013312 + | copper resistance protein CopC TERM 2170 2013364 - 2013390 + G 81 -12.4 -3.03903 | overlap 2013366 TTCTGCACTTTATGG CAGTGATGCTGA TGT TTGGCATCACTG TATTCACCGCCTTTT YPTS_1786 2013315 - 2014199 + | copper resistance D domain-containing protein YPTS_1787 2014296 - 2014637 + | hypothetical protein TERM 2171 2014866 - 2014893 + T 100 -7.8 -5.77856 | AGAGCCATTTCCCTA GACCGAATATCA GGAA TCGTATTCGGTC TTTTTTTAATTTATT TERM 2172 2015023 - 2015040 + T 70 -5.5 -4.57073 | ATGAGTCATTTTCAT CGACTTG TGGC CAAGCCG TTTTTGGGCGAACTG TERM 2173 2015153 - 2015136 - T 75 -8.4 -3.89336 | opp_overlap 2015135 TTAACCAAAGCGAAA CTGGGC AATTAA GCCCAG CCTATTTCAGTCATA YPTS_1788 2015486 - 2015160 - | hypothetical protein TERM 2174 2015622 - 2015603 - H 72 -6.3 -4.29227 | CGAACGACCAACAAA CGGGGCG ATATTA CGCACCG AGACTGTAAACAATA TERM 2175 2016875 - 2016896 + G 79 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPTS_1789 2015693 - 2016901 + | transposase mutator type YPTS_1790 2017261 - 2016923 - | membrane protein TERM 2176 2016999 - 2017012 + g 76 -2.3 -5.27476 | overlap 2017000 CATGTAGGTAGCGAC ATCCC AAAT GGGAA TTTTGTTTTCTTAAA YPTS_1791 2018652 - 2017678 - | hypothetical protein TERM 2177 2020533 - 2020520 - g 70 -9.5 -3.21218 | ATTCGTCAGCAGCAA CGGGC GATG GCCCG TCGTCGGATGATGGT YPTS_1792 2019776 - 2020936 + | flagellar biosynthetic protein FlhB TERM 2178 2021214 - 2021202 - g 74 -9.1 -3.78775 | opp_overlap 2021201 2021198 GCGTCTATCACTAAA CGTGG CTT CCACG CGTATTATTCTGATG TERM 2179 2021497 - 2021485 - g 74 -2.6 -5.17576 | GATGAAGCGAAAAAA CGCC GCTCT GACG TTACGCAAGAGGCTG YPTS_1793 2020936 - 2023014 + | flagellar biosynthesis protein FlhA YPTS_1794 2023014 - 2023436 + | flagellar FlhE family protein YPTS_1795 2024094 - 2027003 + | invasin region 3 TERM 2180 2027143 - 2027113 - T 93 -13.4 -2.64107 | opp_overlap 2027113, overlap 2027116 CAAATTCCCAGAGGA CAACGCCGCTCA GGTTAAT TGAACGGCGTTG TTTTTTAAAAGGATT TERM 2181 2027113 - 2027143 + T 100 -11.9 -5.01732 | opp_overlap 2027113 2027116 CAAATTCCCAGAGGA CAACGCCGCTCAG GTTAA TTGAACGGCGTTG TTTTTTAAAAGGATT TERM 2182 2027140 - 2027116 - T 76 -9.3 -3.4678 | opp_overlap 2027113, overlap 2027113 ATTCCCAGAGGACAA CGCCGCTCA GGTTAAT TGAACGGCG TTGTTTTTTAAAAGG YPTS_1796 2027623 - 2027183 - | FlgN family protein YPTS_1797 2027944 - 2027642 - | anti-sigma-28 factor, FlgM YPTS_1798 2028874 - 2028095 - | flagella basal body P-ring formation protein FlgA YPTS_1799 2029047 - 2029460 + | flagellar basal-body rod protein FlgB TERM 2183 2029672 - 2029689 + G 70 -7.7 -3.88498 | overlap 2029673 TGCTCAGATAGTTGA TGATCCG TCAC CGGATCG TTTGGTGTATCAGCC YPTS_1800 2029466 - 2029870 + | flagellar basal-body rod protein FlgC YPTS_1801 2029885 - 2030571 + | flagellar hook capping protein TERM 2184 2030990 - 2031014 + G 80 -4.9 -5.1287 | overlap 2030991 2030992 CCACTAATCGTCGTT TGGATCTGGCT ATC AGCCAGAACGG TTTTTTCCGTATGCA YPTS_1802 2030773 - 2032059 + | flagellar basal body FlaE domain-containing protein YPTS_1803 2032081 - 2032836 + | flagellar basal-body rod protein FlgF TERM 2185 2033226 - 2033242 + G 70 -9.5 -3.18264 | ATGGCTCTTTCCAGG TTGACCA GAA TGGTCAA TTAGTCACTGCAGGC YPTS_1804 2032862 - 2033644 + | flagellar basal-body rod protein FlgG TERM 2186 2033681 - 2033647 - f 72 -9.8 -2.74144 | overlap 2033646 GGCTCAGCTGTAAAC CTGCTTTCGGGGGGCA TCA TGCCCCCTGATCGCCG CAGCATAATAGGTCT YPTS_1805 2033788 - 2034477 + | flagellar L-ring protein YPTS_1806 2034492 - 2035601 + | flagellar P-ring protein YPTS_1807 2035601 - 2036545 + | flagellar rod assembly protein/muramidase FlgJ TERM 2187 2038016 - 2037999 - g 73 -9.9 -3.38178 | GAACCAATTCCAGAA CGCAGAT AAAT ATCTGCG GGATATGGATGACGG TERM 2188 2038982 - 2038997 + G 71 -8.2 -3.76402 | opp_overlap 2038974 GTAAAACCACCTTGT CCGGTG CTTA CGCCGG TTTAGTCAGTAACGT YPTS_1808 2037559 - 2039223 + | flagellar hook-associated protein FlgK TERM 2189 2039992 - 2039982 - g 83 -4 -5.40072 | TGCTGCGGAAAAAAA TATC TTT GATA CCATTGATACGGTAC YPTS_1809 2039362 - 2040342 + | flagellar hook-associated protein 3 YPTS_1810 2041372 - 2040371 - | DeoR family transcriptional regulator YPTS_1811 2041590 - 2043656 + | short-chain dehydrogenase/reductase SDR YPTS_1812 2043634 - 2043789 + | hypothetical protein TERM 2190 2044701 - 2044714 + G 87 -6.7 -5.0133 | AGTACCTTTACTTTT CTGGA CGTC TCCAG TTTTTTCCGCGACTG YPTS_1813 2043786 - 2044844 + | inner-membrane translocator TERM 2191 2045698 - 2045724 + G 93 -14.4 -3.4252 | opp_overlap 2045694 2045693 2045691 ATCCTAAAGATGCCA GCCTGGCGATGG ATA CCGTCGCCAAGC TTCTGCTCGATAAAA TERM 2192 2045756 - 2045742 - g 85 -5.6 -5.24129 | CTGCTCGATAAAAAA CCCCTC ACT GATGGG ATGAATCTGGGGGTG YPTS_1814 2044887 - 2045882 + | sugar-binding periplasmic protein YPTS_1815 2045948 - 2047525 + | ABC transporter related YPTS_1816 2047528 - 2048550 + | inner-membrane translocator YPTS_1817 2048599 - 2049558 + | ribokinase-like domain-containing protein YPTS_1818 2050223 - 2049624 - | hypothetical protein TERM 2193 2049772 - 2049754 - G 74 -3 -5.02074 | opp_overlap 2049754, overlap 2049755 TTACCTTCTAAAAAA GCGGCTCT AAC AGAGTCGA ATGGTTTTCCTTCTT YPTS_1819 2050400 - 2050233 - | hypothetical protein TERM 2194 2050335 - 2050353 + g 77 -3 -5.25656 | overlap 2050350 AACAAGTAGTTGAAA TCGCTCTT CCG GGGTGCGA TTTTTTGCTGATTTT YPTS_1820 2051478 - 2050696 - | flagellar biosynthetic protein FliR TERM 2195 2050764 - 2050741 - G 79 -10.4 -3.61715 | opp_overlap 2050743 CAGGCGGTCGAAGAA TTCACCAAAC AGGT GTTCGGTGAA AGGGGCTAACAATGG YPTS_1821 2051750 - 2051481 - | flagellar biosynthetic protein FliQ YPTS_1822 2052680 - 2051856 - | flagellar biosynthetic protein FliP YPTS_1823 2053228 - 2052677 - | flagellar biosynthesis protein FliO TERM 2196 2053056 - 2053030 - G 81 -12.2 -3.02144 | opp_overlap 2053028 2053027 CCACCTGCGTTAACA CCCCCCCTGC AGGCATG GCCGGGGGGG CGGCGCTTGATTGCG YPTS_1824 2053644 - 2053228 - | flagellar motor switch protein FliN TERM 2197 2053532 - 2053551 + g 75 -3.4 -5.1485 | overlap 2053536 AGCGATTTAAAGACG CCTTCGGT TGTG GCCGTGGG TTTTTCTGTTGCTTG YPTS_1825 2054642 - 2053641 - | flagellar motor switch protein FliM TERM 2198 2054311 - 2054321 + g 77 -8.2 -4.18018 | opp_overlap 2054304 ACGAATAGCGCAGTA CCGC GTA GCGG TTTTAGATGCACCAG YPTS_1826 2055118 - 2054648 - | flagellar basal body-associated protein FliL YPTS_1827 2056718 - 2055366 - | flagellar hook-length control protein YPTS_1828 2057161 - 2056715 - | flagellar export protein FliJ YPTS_1829 2058655 - 2057237 - | FliI/YscN family ATPase YPTS_1830 2059371 - 2058655 - | flagellar assembly protein FliH YPTS_1831 2060356 - 2059364 - | flagellar motor switch protein FliG YPTS_1832 2062065 - 2060353 - | flagellar M-ring protein FliF TERM 2199 2061929 - 2061911 - G 78 -11 -3.3573 | overlap 2061900 TAAAGGACGCGATAA TCCGGGCT TTT AGCCCAGA GCATCAAGGCGACAA TERM 2200 2062512 - 2062495 - g 80 -4.7 -5.14563 | overlap 2062496 2062497 GGGGTCAGCAAAAAA CCTGCCC GCAG AGGCGGG CTTCGCCAGTGAACT YPTS_1833 2062418 - 2062729 + | flagellar hook-basal body complex subunit FliE YPTS_1834 2063197 - 2063376 + | hypothetical protein TERM 2201 2063582 - 2063596 + G 70 -10 -3.14931 | opp_overlap 2063548, overlap 2063548 TTCGAACTGTCTGCT GCTCTC ATC GAGAGC TTAATCCAGAATCAC YPTS_1835 2063387 - 2063758 + | death-on-curing family protein TERM 2202 2063882 - 2063897 + T 80 -6.1 -4.8066 | opp_overlap 2063882 CGTATGAGATATCAA CCCAC TTAGCT GTGGG TTTTTGCGTTATCTT YPTS_1836 2064659 - 2064048 - | HhH-GPD family protein YPTS_1837 2067774 - 2064820 - | metal dependent phosphohydrolase TERM 2203 2065900 - 2065913 + g 93 -6.7 -5.38549 | TTTACTCTCCATCGC TGCTC TGGC GAGCA TTTTTGTTATTTCAG TERM 2204 2067038 - 2067049 + g 70 -2.2 -4.90778 | opp_overlap 2067028, overlap 2067027 2067035 ATAATCGCCTGGCTG CCTG GTGG TAGG TTTTGTTTAGCTAAA TERM 2205 2067428 - 2067416 - G 100 -4.7 -5.80817 | overlap 2067417 CGCAACATAAAAAAA TCCCC ATT GGGGT AAGCGCTGTATACGG TERM 2206 2067427 - 2067417 - G 76 -8.2 -4.06863 | overlap 2067416 GCAACATAAAAAAAT CCCC ATT GGGG TAAGCGCTGTATACG TERM 2207 2067962 - 2067951 - R 70 -5.8 -4.40561 | opp_overlap 2067935 CGGCCTTAAAAAGAA CGCT TTAA AGCG CAAAATATCTAAAAG YPTS_1838 2069003 - 2068128 - | AraC family transcriptional regulator TERM 2208 2069095 - 2069082 - R 82 -3.1 -5.46657 | TATTTTAATAAAAAA CTTAC CATA GCAAG CCACTTCGACTATAA YPTS_1839 2069666 - 2069304 - | flagellar export chaperone TERM 2209 2069376 - 2069363 - G 70 -9.5 -3.25729 | opp_overlap 2069362 2069370 CATAAGTACGATTAA CCGCC TGTT GGCGG GTAGATTGCCCCACC YPTS_1840 2070075 - 2069677 - | flagellar protein FliS TERM 2210 2069975 - 2069961 - G 81 -12.8 -2.71144 | opp_overlap 2069951, overlap 2069949 TACGTGCGCGAATCA GGGCGC TTT GCGCCC CATCGAACAGCATCA YPTS_1841 2071486 - 2070086 - | flagellar hook-associated 2 domain-containing protein YPTS_1842 2071783 - 2072892 + | flagellin domain-containing protein TERM 2211 2072921 - 2072936 + F 91 -8.2 -4.69027 | overlap 2072933 ATACCCTTATCCCAA CCCTGC TCCG GCGGGG TTTTTACCTCAGTTT TERM 2212 2073067 - 2073057 - f 81 -5.4 -5.10064 | GGGAACAGATAAAAA TCAG ACG CTGA GAATGCGCTTCAAGG YPTS_1843 2073239 - 2073961 + | RNA polymerase, sigma 28 subunit, FliA/WhiG YPTS_1844 2074044 - 2074196 + | hypothetical protein TERM 2213 2074234 - 2074219 - g 73 -2.4 -5.09225 | opp_overlap 2074220, overlap 2074220 ACTCCAGTTAAAAAA GCGGCC GCTG AGCCGT TATTTAAAAGATTAT YPTS_1845 2074196 - 2074705 + | integrase domain-containing protein YPTS_1846 2074967 - 2075986 + | D-cysteine desulfhydrase family protein YPTS_1847 2076110 - 2076910 + | extracellular solute-binding protein TERM 2214 2076929 - 2076948 + G 100 -12.2 -5.06816 | opp_overlap 2076928 CAGAAAGTATGCAAT TGGTGCTG GATT CAGCACCA TTTTTATTGAAGGGT YPTS_1848 2076910 - 2077572 + | polar amino acid ABC transporter, inner membrane subunit YPTS_1849 2077575 - 2078336 + | ABC transporter related TERM 2215 2078413 - 2078387 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2078396, overlap 2078388 2078403 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2216 2078414 - 2078388 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2078396, overlap 2078387 2078403 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2217 2078493 - 2078507 + G 83 -10 -4.18018 | opp_overlap 2078487 TGTCAATAACCTCAA CCACTG ATC CAGTGG TTTTCGGTGGCAAAA YPTS_1850 2078426 - 2078527 + | hypothetical protein TERM 2218 2078589 - 2078613 + T 100 -12.2 -3.78312 | opp_overlap 2078587 GGCATTTTTAATATG TTGGGGGCCA CGGTA TGGTCCCCAA TTTGCTAGATAATTT YPTS_1851 2078999 - 2078628 - | hypothetical protein YPTS_1852 2079292 - 2078999 - | hypothetical protein YPTS_1853 2079453 - 2079584 + | hypothetical protein TERM 2219 2079757 - 2079744 - T 83 -9.5 -4.07568 | opp_overlap 2079744 TGTTGGTTGGCAAAA GGCCC CGAA GGGCC TTAATTGATAAACCG TERM 2220 2079744 - 2079757 + T 74 -9.5 -3.39895 | opp_overlap 2079744 TGTTGGTTGGCAAAA GGCCC CGAA GGGCC TTAATTGATAAACCG YPTS_1854 2083801 - 2079830 - | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 2221 2081575 - 2081552 - G 73 -9.6 -3.28745 | opp_overlap 2081572, overlap 2081555 GGCGTAATAATGCAA GAAGTCCACG GCTT CACGGACTTC GGCGATGGCATTACT TERM 2222 2083369 - 2083380 + g 76 -2.2 -5.26875 | gap 1, overlap 2083360 GTACCATGCCCGCGC G-GCC ATG GGCAC TTTTTTGATTACGCA YPTS_1855 2084146 - 2084343 + | membrane protein TERM 2223 2085754 - 2085768 + G 74 -4.2 -4.91109 | overlap 2085756 TTCCAGGCTTCTTGT TTGCCA GTT TGGCTA TTTTTGTCGTCAGCC YPTS_1856 2084373 - 2085857 + | sodium/proline symporter TERM 2224 2085897 - 2085926 + F 73 -8.6 -3.59698 | opp_overlap 2085899 2085901, overlap 2085899 ATACGTTTAACTACA CATAGCCTCCTG CCATAA CAGGGGGCTATC TTGTATGTAAAATCA TERM 2225 2085899 - 2085924 + F 81 -11.2 -3.37466 | opp_overlap 2085899 2085901, overlap 2085897 ACGTTTAACTACACA TAGCCTCCTG CCATAA CAGGGGGCTA TCTTGTATGTAAAAT TERM 2226 2085924 - 2085899 - f 73 -9.7 -3.00476 | opp_overlap 2085897 2085899, overlap 2085901 ACGTTTAACTACACA TAGCCTCCTGC CATA ACAGGGGGCTA TCTTGTATGTAAAAT YPTS_1857 2086211 - 2087038 + | iron permease FTR1 TERM 2227 2087558 - 2087536 - g 76 -8.4 -4.08485 | GTCAGCCAAACCAAA GCGTTCACCG ATG CAGTGAAGGC TGGGGATCTGGCACT YPTS_1858 2087068 - 2088198 + | hypothetical protein TERM 2228 2088242 - 2088222 - g 100 -12.5 -4.63586 | overlap 2088223 2088234 ACATGAGAGACAAAA CCGGCCCGA AAT TCGGGCCGT ATCAACCGGATGATG TERM 2229 2088241 - 2088223 - g 100 -16 -3.37067 | overlap 2088222 2088234 CATGAGAGACAAAAC CGGCCCGA AAT TCGGGCCG TATCAACCGGATGAT TERM 2230 2088267 - 2088282 + G 73 -7.5 -4.20136 | overlap 2088265 ATGATGAGGCGGTGT CGCCG TCACGT CGGCG TTTAATTTTAGGGAT TERM 2231 2089027 - 2089012 - g 78 -9 -4.00042 | CTGGGTATCAAATAA TGCAGG CGAG CCTGCA TGGGCGGTAGGGGGA YPTS_1859 2088209 - 2089513 + | Dyp-type peroxidase family protein TERM 2232 2089520 - 2089542 + T 91 -7.7 -4.8667 | opp_overlap 2089520 2089518 2089516 GAAGCTTAAAATACA GCACCGC CATCATCGC GCGGTGC TTTTTATGACGTCTA YPTS_1860 2090198 - 2089599 - | flavoprotein WrbA TERM 2233 2090276 - 2090231 - H 80 -9.9 -3.69684 | gap 1, opp_overlap 2090238 AAATTTATTGAATAA GGCTGAT-GATGTCATTAGTCG TCG CGGCTAATGACACCTATTAACC ATAAGCTAATCAGCA TERM 2234 2090238 - 2090268 + H 100 -13.4 -3.04263 | opp_overlap 2090231 TTGAATAAGGCTGAT GATGTCATTAGTCG TCG CGGCTAATGACACC TATTAACCATAAGCT YPTS_1861 2090592 - 2091770 + | kelch repeat-containing protein TERM 2235 2091884 - 2091850 - T 100 -17.4 -4.17657 | opp_overlap 2091855, overlap 2091855 GATTAGAGGGGAAAA TAAAACGGTACCAGAA CAC CTCTGGCACCGTTTTA TCACACTGTGGTTAT TERM 2236 2091879 - 2091855 - T 100 -12.9 -5.09259 | opp_overlap 2091855, overlap 2091850 GAGGGGAAAATAAAA CGGTACCAGAA CAC CTCTGGCACCG TTTTATCACACTGTG TERM 2237 2091855 - 2091879 + T 93 -10 -4.39426 | opp_overlap 2091855 2091850 GAGGGGAAAATAAAA CGGTACCAGA ACACC TCTGGCACCG TTTTATCACACTGTG YPTS_1862 2093320 - 2091896 - | amino acid permease-associated region TERM 2238 2092043 - 2092031 - G 78 -6.2 -4.73614 | CAGTACCAAAACAAA GGCG AAAAA CGCC ATACAAACCCATGAC TERM 2239 2092077 - 2092066 - G 73 -2.2 -5.00895 | opp_overlap 2092076 CCCATGACATAAAAA TACC GGCT GGCA TTTTGTAGATGGATT YPTS_1863 2094435 - 2094986 + | virulence-related outer membrane protein TERM 2240 2095012 - 2095038 + F 85 -5.9 -5.18357 | gap 1, overlap 2095025 TCTATATAATAATAA CAGCCGTATTAG TTCA CTG-TGCGGCTG TTTTTTCATCAGTTG YPTS_1864 2095326 - 2095580 + | membrane protein YPTS_1865 2095949 - 2095608 - | GlpM family protein YPTS_1866 2096301 - 2096077 - | hypothetical protein TERM 2241 2096189 - 2096208 + g 71 -8.6 -3.64822 | gap 1, overlap 2096192 AAGATTACTTTCCCA GC-ATCGGC TTG GCCGATCGC TTTCAGTAACAGAGT TERM 2242 2096704 - 2096714 + H 78 -4 -5.14477 | TTAACTTATCTAATG CTAA TAA TTAG TTTTTTGAATGTATG TERM 2243 2097162 - 2097175 + GH 73 -5.3 -4.57569 | opp_overlap 2097162 2097160, overlap 2097142 GGGTTGGAAGCAACA CGTAA AATT TTACG TTTTTCGCCGGATAC YPTS_1867 2096964 - 2097620 + | two component LuxR family transcriptional regulator YPTS_1868 2097592 - 2099445 + | excinuclease ABC, C subunit YPTS_1869 2099504 - 2100052 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2244 2100239 - 2100223 - T 76 -10.9 -2.62616 | TCAGTTGGTAGAGCA CGACCTT GCC AAGGTCG GGGTCGCGAGTTCGA TERM 2245 2100454 - 2100434 - T 76 -10.5 -2.90714 | opp_overlap 2100433, overlap 2100437 TGAAATCGGTAGACA CAAGGGATT TAA AATCCCTCG GCTTATGGCTGTGCG TERM 2246 2100451 - 2100437 - T 73 -8.6 -3.5947 | opp_overlap 2100433, overlap 2100434 AATCGGTAGACACAA GGGATT TAA AATCCC TCGGCTTATGGCTGT TERM 2247 2100541 - 2100554 + T 100 -9.5 -6.02919 | CGAGTATGTCGTTAA CCGCC GAGA GGCGG TTTTTTTGTTTCTGG TERM 2248 2100682 - 2100669 - T 100 -9.5 -5.78622 | CTAGGCGAAAAAAAA CCCGC AAAA GCGGG ATGAGCGTCGGGTAA YPTS_1870 2100932 - 2100717 - | transcriptional activator Ogr/delta YPTS_1871 2102101 - 2101007 - | late control D family protein TERM 2249 2101806 - 2101788 - G 73 -7.4 -4.25283 | AGCGTTTCACGAAAA TCCGCACT GCG AGCGCGAA CAGTCAGCTTATCCG YPTS_1872 2102562 - 2102098 - | P2 GpU family protein YPTS_1873 2105489 - 2102574 - | TP901 family phage tail tape measure protein TERM 2250 2102869 - 2102839 - G 73 -10.5 -3.13432 | gap 2, opp_overlap 2102846 CTGAATAGCATGGAA GCCGCAAC--CGCCA TAG CGGCGGTGTTGCGGC GGCTGGTGACCTGTG TERM 2251 2103040 - 2103079 + g 72 -5.7 -4.37658 | overlap 2103019 2103015 2103045 2103068 CCGTAGTTACCCGGG CCCGCGGCAGTGGC-TGGG TTTG CCTGCGCCAGTGCC-TGGG TTTTGTCAGAGCGTT TERM 2252 2104409 - 2104426 + g 71 -9.1 -3.56643 | opp_overlap 2104393 2104408 CGCTACCCAGCATAG CTGTGGC CGCC GCCACGG TTTCCAGACTCTGGC TERM 2253 2104924 - 2104934 + g 71 -8.2 -3.64162 | overlap 2104931 GTATACCCTAATCCG GCGG CTA CCGC TTTGCGCTGATTGCT YPTS_1874 2105963 - 2105616 - | tail E family protein TERM 2254 2106010 - 2105991 - R 90 -11.4 -3.6512 | opp_overlap 2105990 2105987 TAAATAAGGGGTAAA GGCGCGGA GTTA TCCGCACC GTGATATTACAGGCC YPTS_1875 2106532 - 2106017 - | phage major tail tube protein YPTS_1876 2107719 - 2106544 - | tail sheath protein TERM 2255 2107522 - 2107536 + g 83 -11.4 -3.57144 | TGAATGGGCTAATGT GCCGGT TTC ACCGGC TTTGCCGCTGGCGGC TERM 2256 2107846 - 2107818 - R 100 -15.4 -4.24786 | opp_overlap 2107825, overlap 2107819 GGCACAACAGAGAAA CCAACAACCCCG GCTGG CGGGGTTGTTGA GCAGGGCTATACGAC TERM 2257 2107845 - 2107819 - R 100 -16.7 -3.14149 | opp_overlap 2107825, overlap 2107818 GCACAACAGAGAAAC CAACAACCCCG GCTGG CGGGGTTGTTG AGCAGGGCTATACGA TERM 2258 2107825 - 2107839 + r 73 -8.5 -3.61517 | opp_overlap 2107819 2107818 CAGAGAAACCAACAA CCCCG GCTGG CGGGG TTGTTGAGCAGGGCT YPTS_1877 2108332 - 2107853 - | hypothetical protein YPTS_1878 2109783 - 2108344 - | hypothetical protein YPTS_1879 2110388 - 2109780 - | phage tail protein I YPTS_1880 2111289 - 2110381 - | baseplate J family protein YPTS_1881 2111645 - 2111292 - | GPW/gp25 family protein YPTS_1882 2112277 - 2111642 - | phage baseplate assembly protein V TERM 2259 2112069 - 2112048 - G 78 -7.9 -4.46212 | overlap 2112049 GCGGGCAGCACAAAA CCGGTGGTG AGCT CACCGCCGA TACTGATCACCATGA TERM 2260 2112133 - 2112117 - G 83 -7.2 -4.8048 | overlap 2112121 GGCGCAGACCAAAAA CGCACC CGCCC GGCGCG CAGGGTTAACCAATT YPTS_1883 2112506 - 2112985 + | Hcp1 family type VI secretion system effector TERM 2261 2113047 - 2113030 - gf 72 -6.3 -4.26327 | opp_overlap 2113036 TATCCACCAAAATAA TAGACTC TTTT GAGCCTA AAAGTACTTCTGGCA YPTS_1884 2112996 - 2113661 + | hypothetical protein YPTS_1885 2113636 - 2113851 + | hypothetical protein YPTS_1886 2114301 - 2113855 - | phage virion morphogenesis protein TERM 2262 2114237 - 2114227 - G 73 -8.2 -3.92373 | overlap 2114228 GACCTGACGCATAAA CGCG CCG CGCG CCTGTGGGGCCAATT YPTS_1887 2114765 - 2114298 - | P2 phage tail completion R family protein YPTS_1888 2115286 - 2114864 - | putative LysB protein-like protein YPTS_1889 2115686 - 2115291 - | bacteriophage P7 related protein YPTS_1890 2116059 - 2115673 - | hypothetical protein YPTS_1891 2116292 - 2116089 - | tail X family protein YPTS_1892 2116783 - 2116292 - | head completion protein TERM 2263 2116480 - 2116466 - G 75 -7.8 -4.21194 | overlap 2116468 TTGCATCAGGCAAAA CACCGC GGT GCGGTA CAACTGAATGCGAGT TERM 2264 2116478 - 2116468 - G 71 -8.2 -3.70674 | overlap 2116466 GCATCAGGCAAAACA CCGC GGT GCGG TACAACTGAATGCGA TERM 2265 2116862 - 2116877 + r 73 -8.2 -3.71527 | GGTTAGCCAGCGTGC CGCCCT CGCC GGGGCG TTTGGGTGATTAGGC YPTS_1893 2117671 - 2117018 - | small terminase subunit TERM 2266 2117224 - 2117243 + g 73 -7 -4.2828 | opp_overlap 2117224 GCTGGGCGCGTAATA GCTGCGGG GTAT CCAGCGGC TTTTCATCGGTCAAG YPTS_1894 2118733 - 2117678 - | P2 family phage major capsid protein YPTS_1895 2119585 - 2118770 - | capsid scaffolding TERM 2267 2120266 - 2120280 + G 74 -4.2 -4.91109 | CTCAAATCCCGTCAA GTCGGT GCA ACCTAC TTTTTCTCATGGGAA TERM 2268 2120557 - 2120545 - g 71 -4.7 -4.56597 | overlap 2120546 CCCGGCTTTCAAAAA CTGCG CCG CGCCG CATCGGGCATGGCAT TERM 2269 2120713 - 2120727 + G 71 -9.2 -3.49475 | GTCAGCTACCCACGG CTGGCC GGA GGCCGG TTATGTGAGGATAAG TERM 2270 2121379 - 2121392 + G 73 -4.5 -4.71426 | gap 1, overlap 2121379 2121380 ACCATGACCGCCACT G-GGCG AAA CGCCAC TTTTGTTACTAGCAG YPTS_1896 2119756 - 2121519 + | hypothetical protein YPTS_1897 2121519 - 2122556 + | PBSX family phage portal protein TERM 2271 2122823 - 2122794 - g 100 -10.7 -4.58773 | TTCAGCAAACCAAAA TCAGCAAGCCACC TAGT GCTGGCATGCTGA TACCAAAAAAAAAGT TERM 2272 2122932 - 2122914 - g 82 -5.4 -5.03994 | opp_overlap 2122906 CTTTACAGATAAAAA TATCTTTC ATA GAAAAATA TAAGCCTTAGAGACG YPTS_1898 2122664 - 2122942 + | hypothetical protein TERM 2273 2122993 - 2122961 - T 100 -15 -2.6999 | opp_overlap 2122961, overlap 2122956 2122953 CGAAAAGTTAGAGTA TGCATAGGCCACCT TTTTG AGGTGGCTTATGCA TTTATACGTTTAGCG TERM 2274 2122961 - 2122993 + T 100 -17.9 -4.02132 | opp_overlap 2122956 2122953 2122961 CGAAAAGTTAGAGTA TGCATAGGCCACCTT TTT GAGGTGGCTTATGCA TTTATACGTTTAGCG YPTS_1899 2123224 - 2123030 - | hypothetical protein TERM 2275 2123511 - 2123485 - R 100 -9.5 -5.37593 | gap 2, opp_overlap 2123485 GGTGAAATGAAAAAA GCGCCTCTCTACG TGG CGT-G-GAGGCGC TTTGGTGTGGGGTGA TERM 2276 2123485 - 2123511 + r 81 -9.5 -3.83998 | gap 2, opp_overlap 2123485 GGTGAAATGAAAAAA GCGCCTCTCTACG TGG CGT-G-GAGGCGC TTTGGTGTGGGGTGA YPTS_1900 2123977 - 2123633 - | putative GP46 protein YPTS_1901 2124204 - 2123974 - | phage-like protein YPTS_1902 2126740 - 2124185 - | replication gene A TERM 2277 2124445 - 2124457 + g 80 -6.9 -4.7629 | overlap 2124444 2124443 GTGCGGTTTTTTCTC GCCGT TGG GCGGC TTTTTCGGTTGATGC TERM 2278 2126277 - 2126323 + g 95 -13.3 -3.88559 | gap 1, opp_overlap 2126282 2126285, overlap 2126282 CGCACGGCATCCAGA CGTAACAATGCATTCTT-GCCG GTAC CGGTTAAGAATGCATTGGTATG TTTATCACCATGATT TERM 2279 2126318 - 2126282 - G 79 -11.8 -3.1355 | gap 1, opp_overlap 2126282 2126277, overlap 2126285 GGCATCCAGACGTAA CAATGCATTCTT-GCCG GTAC CGGTTAAGAATGCATTG GTATGTTTATCACCA TERM 2280 2126282 - 2126318 + g 88 -14 -2.59797 | gap 1, opp_overlap 2126282 2126285, overlap 2126277 GGCATCCAGACGTAA CAATGCATTCTT-GCCG GTAC CGGTTAAGAATGCATTG GTATGTTTATCACCA TERM 2281 2126630 - 2126613 - G 71 -8.5 -3.72576 | overlap 2126629 GCGGCCGGCACTAAA GATTGGT GACC ACCAATC GCGGGGCGCGGGGCA TERM 2282 2126706 - 2126674 - G 87 -11.2 -4.21607 | overlap 2126676 2126677 2126679 CCCATTTAATAGAAA CATCACCGCTGCCC GGATA AGGCAGCGGTGGAG TTGGGGTGATGCGGC TERM 2283 2126704 - 2126676 - G 88 -12.4 -3.70511 | overlap 2126674 2126677 2126679 CATTTAATAGAAACA TCACCGCTGCCC GGATA AGGCAGCGGTGG AGTTGGGGTGATGCG TERM 2284 2126703 - 2126677 - G 100 -15.9 -2.81584 | overlap 2126676 2126674 2126679 ATTTAATAGAAACAT CACCGCTGCCC GGATA AGGCAGCGGTG GAGTTGGGGTGATGC TERM 2285 2126701 - 2126679 - G 83 -12.7 -2.94681 | overlap 2126677 2126676 2126674 TTAATAGAAACATCA CCGCTGCCC GGATA AGGCAGCGG TGGAGTTGGGGTGAT YPTS_1903 2127600 - 2126737 - | C-5 cytosine-specific DNA methylase TERM 2286 2126809 - 2126830 + g 71 -8.7 -3.64703 | opp_overlap 2126803, overlap 2126804 CCTTATGAACGCTTC CGCCGTCGA AGCA TTGATGGCG TTTCCGTAGGCGCGC TERM 2287 2127600 - 2127624 + r 70 -9.4 -2.77043 | overlap 2127599 2127602 AAGCACCCTTGGTCA TATTGCAGCC CTCAA GGTTGCAATA ATTTCACCTACTGCC YPTS_1904 2128415 - 2127597 - | DNA adenine methylase YPTS_1905 2129065 - 2128412 - | exonuclease RNase T and DNA polymerase III TERM 2288 2129115 - 2129087 - R 74 -8.1 -3.93166 | opp_overlap 2129088, overlap 2129088 CCCCTAAAAAATTAA CTCCCTCTAACGC AAT GCGCCAAAGGGAT ATGTATTTATTTTTT TERM 2289 2129114 - 2129088 - R 83 -11.6 -2.95177 | opp_overlap 2129088, overlap 2129087 CCCTAAAAAATTAAC TCCCTCTAACGC AAT GCGCCAAAGGGA TATGTATTTATTTTT YPTS_1906 2129883 - 2129122 - | hypothetical protein YPTS_1907 2130271 - 2129966 - | hypothetical protein YPTS_1908 2130562 - 2130302 - | hypothetical protein YPTS_1909 2130719 - 2130573 - | hypothetical protein YPTS_1910 2131018 - 2130704 - | hypothetical protein YPTS_1911 2131221 - 2131015 - | phage-like protein YPTS_1912 2131436 - 2131233 - | putative DNA-binding protein YPTS_1913 2131640 - 2131449 - | hypothetical protein TERM 2290 2131733 - 2131716 - g 85 -2.7 -5.64421 | opp_overlap 2131718, overlap 2131718 ATGCCAAACAAAAAA GAGGAAT TATT ATTCCTA ATTGGCGCACGACTG YPTS_1914 2131701 - 2132069 + | XRE family transcriptional regulator YPTS_1915 2132090 - 2133787 + | hypothetical protein YPTS_1916 2133808 - 2134227 + | putative bacteriophage integrase TERM 2291 2134527 - 2134507 - g 77 -2.7 -5.26155 | AGATAAATAGAAAAA TAAAATC GGTTGAT GATTTTA AACCTTACGCGAGTG YPTS_1917 2134296 - 2134676 + | hypothetical protein TERM 2292 2134716 - 2134706 - g 71 -6.8 -4.25104 | opp_overlap 2134705 CTTCCGTCAGGAAAA TGGC TTT GCCA ATGCTTCCCTTATGG YPTS_1918 2134676 - 2135008 + | putative bacteriophage integrase YPTS_1919 2135302 - 2135679 + | integrase family protein TERM 2293 2135897 - 2135910 + T 100 -9.5 -5.71983 | CGAGTATATCGTTAA CCGCC GAGA GGCGG TTTTTTTGTGATTAA TERM 2294 2135978 - 2135993 + T 100 -6.2 -5.63103 | CATGTTTTGTGGAGG GTGAAT AAAA ATTCAC TTTTTTTGATTACCG YPTS_1920 2136214 - 2135990 - | phage integrase family site specific recombinase YPTS_1921 2136417 - 2136839 + | hypothetical protein YPTS_1922 2137394 - 2137516 + | hypothetical protein YPTS_1923 2137534 - 2137686 + | hypothetical protein YPTS_1924 2137760 - 2137933 + | hypothetical protein YPTS_1925 2138125 - 2138307 + | hypothetical protein YPTS_1926 2138642 - 2138337 - | hypothetical protein YPTS_1927 2139012 - 2138668 - | Hcp1 family type VI secretion system effector YPTS_1928 2140191 - 2139232 - | integrase catalytic region TERM 2295 2139323 - 2139336 + g 70 -9.5 -3.17219 | CAACGTGTCGGGTTC GCGGC TCTC GCCGC TTGATAGACCTTATA YPTS_1929 2140682 - 2140263 - | transposase IS3/IS911 family protein TERM 2296 2140321 - 2140344 + g 70 -2.2 -4.86731 | overlap 2140322 2140323 TTTCTTAACACCAGG ATCGCTGCCG TCTC CGCCAGCGCC TTTTCTTTACGCAGC TERM 2297 2140468 - 2140478 + g 80 -4.6 -5.0133 | TGCGCTATCTGCGCG GGGT AAA GCCC TTTTTTACGGCAGTA YPTS_1930 2141515 - 2141643 + | hypothetical protein TERM 2298 2141657 - 2141678 + F 100 -13.1 -3.65314 | AATTCTCTTCTCAAC GTGGCGATA TTAT TATCGCCAC TTATTAGAAATTGGA TERM 2299 2141824 - 2141860 + G 76 -2.3 -5.29846 | opp_overlap 2141827, overlap 2141826 2141827 GGTTTCAGTTTCACA AATTGCTATGCTACAAA TGA TATTTAGCGTAGCAGTA TTTTTATTTGAACTT YPTS_1931 2141702 - 2142970 + | major facilitator transporter TERM 2300 2143513 - 2143497 - g 77 -4.5 -4.86731 | overlap 2143492 GTCGCTGAAAGAAAA TATTTCA GAA CGAAATA AAACATGTGGGGTAG YPTS_1932 2142967 - 2144700 + | UBA/THIF-type NAD/FAD binding protein TERM 2301 2145339 - 2145357 + G 71 -9 -3.49951 | AAAACATTGAGCTAT TTAAATCC TCT GGATTTAA TTCTGTCGAAATATG YPTS_1933 2144690 - 2145415 + | methyltransferase type 12 YPTS_1934 2145403 - 2146257 + | hypothetical protein YPTS_1935 2146257 - 2147054 + | methyltransferase type 11 YPTS_1936 2147051 - 2148217 + | Orn/DAP/Arg decarboxylase 2 TERM 2302 2148487 - 2148508 + GT 77 -10.3 -3.16971 | opp_overlap 2148489 TTCGTCATGCTCAGA TACCCTATT TTGA AATAGGGTA TTGGCTGTCTACTCA YPTS_1937 2148192 - 2148749 + | ribosomal-protein-alanine N-acetyltransferase-like protein YPTS_1938 2149081 - 2148779 - | transposase-like protein TERM 2303 2148872 - 2148852 - G 73 -5.4 -4.49939 | overlap 2148854 ACACAATCGATAAAA TCCAGCGT ATTTG ACGCTGTA CGGCGGTGATAGAGC YPTS_1939 2150378 - 2149419 - | integrase catalytic region TERM 2304 2149510 - 2149523 + g 70 -9.5 -3.17219 | CAACGTTTGGGGTTC GCGGC TCTC GCCGC TTGATAGACCTTATC YPTS_1940 2150933 - 2150604 - | ISAfe5, transposase OrfA TERM 2305 2150656 - 2150666 + g 80 -4.6 -5.0133 | TGCGCTATCTGCGCG GGGT AAA GCCC TTTTTTACGGCAGTA YPTS_1941 2151121 - 2150981 - | hypothetical protein TERM 2306 2151246 - 2151211 - R 71 -4.9 -4.70046 | gap 1, overlap 2151206 2151212 2151213 GAGAAAACTATAAAA TGGGTAACCACTTTAC GCGAT ATAGAGTGGTTAC-CA TTAACAGGAAAGTGA TERM 2307 2151245 - 2151213 - R 71 -10 -2.62614 | overlap 2151206 2151211 2151212 GAAAACTATAAAATG GGTAACCACTTTAC GCGAT ATAGAGTGGTTACC ATTAACAGGAAAGTG YPTS_1942 2151545 - 2151267 - | hypothetical protein YPTS_1943 2151831 - 2151526 - | hypothetical protein TERM 2308 2151698 - 2151678 - G 71 -7.5 -4.05747 | overlap 2151667 2151679 TACACCCCATAGAAA CCCCCATCG GGC CGATGGGAT GCAATCTGAAATTTC TERM 2309 2151697 - 2151679 - G 74 -11 -3.02966 | overlap 2151667 2151678 ACACCCCATAGAAAC CCCCATCG GGC CGATGGGA TGCAATCTGAAATTT YPTS_1944 2152043 - 2151828 - | membrane protein TERM 2310 2152004 - 2151989 - G 73 -3.3 -4.89233 | TACCAACACCAAAAA TACTC AAAGGG GAGTA GTGAGCATTGTTAAC YPTS_1945 2153081 - 2152782 - | GPW/gp25 family protein YPTS_1946 2153437 - 2153078 - | hypothetical protein TERM 2311 2153188 - 2153172 - G 83 -7.2 -4.8048 | overlap 2153176 GGCGCAGACCAAAAA CGCACC CGCCC GGCGCG CAGGGTTAACCAATT YPTS_1947 2153468 - 2153740 + | hypothetical protein TERM 2312 2153867 - 2153857 - g 70 -2.4 -4.90296 | overlap 2153859 AAAAGGTGATAAAAA CCCG TGG CCGG CCAAAACTGGCAAAC YPTS_1948 2153721 - 2154011 + | hypothetical protein TERM 2313 2154131 - 2154101 - g 72 -11.2 -2.72511 | overlap 2154100 TGCATCCCCCCAAAG GTTCCCGGATACTT ACA AAGAATTCGGGAAC AATATAAGGAAAGTG TERM 2314 2154610 - 2154596 - g 70 -10 -3.1211 | CATGAGACTATCGAA CCACTC AAA GAGTGG AGAAATGAGATCGTT YPTS_1949 2154077 - 2155153 + | hypothetical protein YPTS_1950 2155201 - 2156061 + | transposase mutator type TERM 2315 2156373 - 2156394 + G 79 -10.1 -3.74693 | TTTATTATCGAGTTT GGTGACCGC CTGA GCGATCACC TTTAATACAGTGGCG YPTS_1951 2156061 - 2156399 + | putative transposase (IS285) YPTS_1952 2156629 - 2156456 - | hypothetical protein TERM 2316 2156725 - 2156696 - R 86 -11.7 -3.31428 | gap 1, overlap 2156694 2156692 2156717 TTTAAATACAATAGA TAGCTCTGATTGAG TTA CT-AATCAGAGCTA CTGAGTACCTGTTTG YPTS_1953 2157386 - 2156817 - | hypothetical protein YPTS_1954 2157832 - 2157398 - | hypothetical protein YPTS_1955 2158250 - 2158456 + | hypothetical protein YPTS_1957 2158784 - 2158623 - | hypothetical protein YPTS_1958 2158801 - 2159598 + | GntR family transcriptional regulator YPTS_1959 2159852 - 2159568 - | hypothetical protein TERM 2317 2160022 - 2160036 + H 72 -7.8 -3.87149 | opp_overlap 2160011, overlap 2160016 2160028 TAAAGCGAACCTTAC GCACCG TGA TGGTGC TTTGAGTTTGCTCAA TERM 2318 2160028 - 2160062 + H 100 -15.3 -3.88232 | gap 1, overlap 2160016 2160022 GAACCTTACGCACCG TGATGGTGCT-TTGAG TTTG CTCAAGAGCACCATCA TTGTTCTGTAAACGA YPTS_1960 2160127 - 2160264 + | hypothetical protein YPTS_1961 2160266 - 2161279 + | oxidoreductase domain-containing protein YPTS_1962 2161356 - 2162576 + | extracellular solute-binding protein TERM 2319 2162576 - 2162616 + F 72 -9.9 -2.77192 | gap 1, overlap 2162577 AGCGTTGTCCCGTTA ATCGCTTTCCGTCAGTGC AGTTGC GCACTGACGGAAA-TGAA ATTCTTACGCAGGTT TERM 2320 2162577 - 2162617 + F 70 -7.7 -3.6279 | gap 1, overlap 2162576 GCGTTGTCCCGTTAA TCGC-TTTCCGTCAGTGC AGTTGC GCACTGACGGAAATGAAA TTCTTACGCAGGTTT YPTS_1963 2162643 - 2163503 + | binding-protein-dependent transport systems inner membrane component TERM 2321 2164115 - 2164132 + G 73 -8.5 -3.80174 | TGACACTGTTCTTTA TCTGGAA CGAA TTCCAGA TTGTTCTAACGCTCT YPTS_1964 2163496 - 2164323 + | binding-protein-dependent transport systems inner membrane component YPTS_1965 2164348 - 2165490 + | ABC transporter related YPTS_1966 2166913 - 2166173 - | Pili assembly chaperone, N-terminal TERM 2322 2166420 - 2166434 + g 75 -5.8 -4.65895 | opp_overlap 2166419 2166422 TTCGCGATTATAACG TATTGA TTA TCAATA TTTTTAAGTGAAAAC YPTS_1967 2168259 - 2166910 - | hypothetical protein YPTS_1968 2170866 - 2168275 - | fimbrial biogenesis outer membrane usher protein TERM 2323 2168529 - 2168540 + g 72 -5.8 -4.33105 | CCATAGGCAATTGGC TGCC ATCG GGCA TTTTAATGGTGATTA TERM 2324 2170143 - 2170117 - G 71 -2.9 -4.87273 | AAGACTGGAGAAAAA CTGGCCGGAAC TGAAG GTTTCACCCAG CGTAATTTCACTGCC YPTS_1969 2171646 - 2170915 - | Pili assembly chaperone, N-terminal TERM 2325 2171234 - 2171224 - G 73 -5.4 -4.58395 | opp_overlap 2171232 TGCAGGGCGGAAAAA GACT TTT AGTC GGTTATTGACGATCA YPTS_1970 2172269 - 2171739 - | fimbrial protein TERM 2326 2172620 - 2172604 - R 100 -5.8 -6.23209 | opp_overlap 2172604 TGAATCAAAAAAAAA CGCCAA GAAGA CTGGCG CTTTTAATAGGGGAA YPTS_1971 2176678 - 2172650 - | histidine kinase TERM 2327 2175618 - 2175603 - GR 73 -3.2 -4.99638 | AGATCGACAGAAAAA CCGG CCATTTCT CCGG TCCGGCGGTCACGGA TERM 2328 2176560 - 2176534 - GR 100 -14.5 -3.31931 | overlap 2176527 TTAGAGAAGCATGAA GCTGCCCGCTA ATCAG TAGCAGGCAGC AGAGTACGGTACGCA YPTS_1972 2177285 - 2176653 - | two component LuxR family transcriptional regulator YPTS_1973 2179434 - 2178112 - | acetyl-CoA hydrolase/transferase YPTS_1974 2180107 - 2179457 - | dehydratase TERM 2329 2180086 - 2180062 - GR 100 -13.6 -3.01416 | gap 1, overlap 2180052 TATCAGGCAGAGATA CCCGCTCGGGT AAGT ACCCG-GCGGG CCTGACGTGCAACAG YPTS_1975 2180891 - 2180049 - | HpcH/HpaI aldolase TERM 2330 2180926 - 2180960 + H 78 -9.4 -3.61541 | overlap 2180924 CGCTTAGTCTATGGT CGCCGTTATCATTTAT CCA ATATATGATACCGGTG TGTTTAATTGCTTTT TERM 2331 2181807 - 2181829 + G 100 -16.3 -3.03635 | GCTCGCGTTGGCGTA CCGGCGAGG GGATA CCTCGCCGG TATTAAGAAACTTTG YPTS_1976 2180986 - 2181864 + | LysR family transcriptional regulator TERM 2332 2181935 - 2181923 - T 71 -3.3 -5.03145 | overlap 2181924 CAATCGGTTAAAAAA CGCCC CAA GAGCA AAATTATTGGCTATC YPTS_1977 2182412 - 2181939 - | hypothetical protein TERM 2333 2182188 - 2182166 - G 73 -2 -5.10208 | overlap 2182168 CAATGGGAATAAAAA CATTCCAC TCGCCTT GCGGAATA AACGAGAAATGTCCC YPTS_1978 2182997 - 2182437 - | hypothetical protein YPTS_1979 2184446 - 2183217 - | major facilitator transporter TERM 2334 2183944 - 2183903 - G 72 -5.7 -4.33274 | opp_overlap 2183930, overlap 2183931 TGTAGAGTACTAAAA GGGCGGGAAGCACACCAAT CCAG AATAATGCGCGCCACGCCC ACTCCTCTGATAGTA TERM 2335 2184474 - 2184500 + r 73 -2.5 -5.16681 | gap 2, overlap 2184479 TACAGACTGGCTTTT TAACTCTTGTGAG CAC CTCACA--AGTTA TTTTGTTATTTTTAA TERM 2336 2184479 - 2184497 + r 100 -11.8 -4.59946 | overlap 2184474 ACTGGCTTTTTAACT CTTGTGAG CAC CTCACAAG TTATTTTGTTATTTT YPTS_1980 2185381 - 2184512 - | amidohydrolase 2 TERM 2337 2186016 - 2186034 + G 72 -11 -2.52464 | opp_overlap 2186016 2186014 CGACGTTAGCAAATA CTGTCGGT ACC GCCGACAG TGCGTTACGGCAGGC TERM 2338 2186034 - 2186016 - g 77 -10.3 -3.4582 | opp_overlap 2186016, overlap 2186014 CGACGTTAGCAAATA CTGTCGG TACCG CCGACAG TGCGTTACGGCAGGC YPTS_1981 2185493 - 2186455 + | LysR family transcriptional regulator YPTS_1982 2187359 - 2186760 - | NADH:ubiquinone oxidoreductase, subunit E TERM 2339 2186988 - 2186978 - G 78 -5.4 -4.98255 | GCTGAACCATAAAAA TGGT TGC ACCA AATATTGCACAGTGG YPTS_1983 2187711 - 2188871 + | GntR family transcriptional regulator YPTS_1984 2190596 - 2189067 - | amino acid permease-associated region TERM 2340 2189971 - 2189959 - G 71 -4.7 -4.49556 | CCGTGAGGAAAGAAA CCGCC GTT GTCGG TAATCAAATGAATAC TERM 2341 2190387 - 2190375 - G 71 -2.7 -4.93365 | CCGGAGAATGAAAAA TGAAA AAA TTCCA CAAACCAGATAAACC TERM 2342 2191046 - 2191080 + r 73 -3.7 -4.96845 | TTATATTGCATTTTA TCTTATTTCATATGT ATCTA ACCCATGGAATAAGA TTTATTTATTTTTAT YPTS_1985 2192131 - 2191361 - | DeoR family transcriptional regulator TERM 2343 2191781 - 2191748 - G 73 -4.7 -4.7373 | GGATTCGATCAAAAA GTTAGCAATAACAAA GTCG TTGGTTACCACTAAC AGATCATCTCTGTCC YPTS_1986 2193342 - 2194349 + | glutaminase, core TERM 2344 2195293 - 2195280 - g 75 -8.1 -4.30416 | AGGAGCAAGGTAAAA CGCCA TTAC TGGCG CTAGACGTGATTACA TERM 2345 2195973 - 2195960 - g 70 -8.1 -3.81146 | CGGGTGAATGAAGAA GCACG GTTA CGTGC GCTGAAATTCGGTTT YPTS_1987 2194460 - 2196100 + | major facilitator transporter TERM 2346 2196109 - 2196089 - f 84 -5.4 -5.25803 | overlap 2196077 2196090 AATCTGGATAAAAAA GCCAGCAA GTAAG TTGCTGGA GGTTATTGACAAAGT TERM 2347 2196108 - 2196090 - f 78 -8.9 -3.74397 | overlap 2196077 2196089 ATCTGGATAAAAAAG CCAGCAA GTAAG TTGCTGG AGGTTATTGACAAAG TERM 2348 2196184 - 2196210 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 2196173, overlap 2196179 2196185 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2349 2196185 - 2196211 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 2196173, overlap 2196179 2196184 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2350 2196290 - 2196300 + F 70 -2.6 -5.07567 | GCAAGTAAGTTGCTG TTAA AAT TTAA TTTTTTGAAATATAA TERM 2351 2196335 - 2196367 + F 100 -15 -5.72622 | gap 1, opp_overlap 2196331 2196335 2196354 TTGAAATAAAAGTGA CTGGCAGTGTGTTGC GAAA GCAGC-CACTGCCAG TTTTTTCTTTCTGGC TERM 2352 2196367 - 2196335 - f 91 -12.8 -2.88887 | gap 1, opp_overlap 2196335, overlap 2196331 2196354 TTGAAATAAAAGTGA CTGGCAGTGTGTTGC GAAA GCAGC-CACTGCCAG TTTTTTCTTTCTGGC TERM 2353 2196567 - 2196582 + F 71 -3.2 -5.00884 | opp_overlap 2196567 ATTGGTGGGGTAAAT TGCGCA TCAG TACGCA TTTTTTGAAAAAAAT TERM 2354 2196956 - 2196941 - g 77 -4.6 -5.00616 | TCTCCGCGCAAAAAA GCTTCC AGAT GGAGGC GGCCTTTGGCGAGAT TERM 2355 2197605 - 2197586 - g 75 -7.8 -4.26461 | AGCAAGGGAAAATAA CACCGGCA ATGA TGGCGGTG CAGGATGCCTACTTT YPTS_1988 2196700 - 2198619 + | iron permease FTR1 YPTS_1989 2198823 - 2199350 + | hypothetical protein YPTS_1990 2199491 - 2199628 + | hypothetical protein TERM 2356 2200022 - 2200037 + G 74 -9 -3.69333 | ATTGCTCAATCTGGC TGCCAC CGTG GTGGCA TTTGGCTGGGTTATA YPTS_1991 2199651 - 2201060 + | YHS domain-containing protein YPTS_1992 2201063 - 2202355 + | hypothetical protein TERM 2357 2202475 - 2202501 + G 90 -13 -3.62224 | opp_overlap 2202459 GTGTCAGTGTCGTCT TTGCCGCGCTGA CCG TTGGCGCGGCGA TTGTTACCGCAATGT TERM 2358 2203110 - 2203128 + G 71 -8.8 -3.62046 | opp_overlap 2203110 2203107, overlap 2203111 CCAATTCGCAAAGTA TCTGCCTC TGA GGGGCAGG TTCTTGACAAGATAA TERM 2359 2203111 - 2203127 + G 71 -10.1 -2.77013 | opp_overlap 2203110 2203107, overlap 2203110 CAATTCGCAAAGTAT CTGCCTC TGA GGGGCAG GTTCTTGACAAGATA TERM 2360 2203267 - 2203257 - g 77 -6.8 -4.56597 | overlap 2203258 TTTGCGTTGCAAAAA GCAC TGG GTGC CAGTGGGCGTGACAT TERM 2361 2203272 - 2203258 - g 73 -10 -3.33744 | overlap 2203257 TTGCGTTGCAAAAAG CACTGG GTG CCAGTG GGCGTGACATTATCC TERM 2362 2203450 - 2203467 + G 71 -9.1 -3.61398 | TGCTTTCGTTGTTTG TTGCCGC TGTG GCGGCGA TTGTTCCCACCCGAC YPTS_1993 2202345 - 2203526 + | hypothetical protein YPTS_1994 2203530 - 2204243 + | ABC transporter related YPTS_1995 2204233 - 2204730 + | redoxin domain-containing protein YPTS_1996 2204727 - 2205041 + | cytochrome c class I TERM 2363 2205869 - 2205842 - g 77 -8.6 -4.1523 | TGCAACCAGAAAGAA TCCCACATATTA TCAG TAATATGCAGGA GTGTACTTTACCCGG YPTS_1997 2205214 - 2206101 + | tellurite resistance protein TehB TERM 2364 2206596 - 2206572 - g 77 -2.8 -5.32882 | gap 1, overlap 2206573 2206574 CATCATTATAAAAAA CGTGATCGGCC TATT GGCCCACCA-G TGGAAGCGGTCTTTA TERM 2365 2206640 - 2206625 - g 71 -4 -4.66609 | gap 1 TAGTTTAGTCAAAAA CGCA-CT TGA AGATGCG GGAGTGCTGGATAAG YPTS_1998 2206242 - 2207459 + | peptidase M24 TERM 2366 2210164 - 2210178 + G 86 -7.8 -4.84359 | opp_overlap 2210146 2210163 TGATGCTGAACTTAG CGTGAC GCC GTCGCG TTTTTCTGACGGTAA YPTS_1999 2208128 - 2210596 + | TPR repeat-containing protein TERM 2367 2211263 - 2211251 - g 75 -3.4 -5.09259 | GATCCCAAAACAAAA CAGT ATGAA ACTG TTGAAGCCTTTAAGC YPTS_2000 2210609 - 2212630 + | polysaccharide deacetylase YPTS_2001 2212620 - 2213954 + | glycosyl transferase family protein TERM 2368 2214101 - 2214126 + G 77 -10.5 -3.54459 | CATATGGGGCCGATA CCGTTGAGGAT TTAT ATTCTCAGCGG TTTGACGACGATTGC YPTS_2002 2213951 - 2214418 + | haemin storage system, HmsS protein YPTS_2003 2214751 - 2215650 + | GCN5-related N-acetyltransferase TERM 2369 2216134 - 2216124 - g 77 -4 -5.07652 | GCTGTTAAAACAAAA TCAA AGA TTGA CTCAAGCGACTCGTT YPTS_2004 2216089 - 2216367 + | hypothetical protein YPTS_2005 2216427 - 2217215 + | PhoH family protein TERM 2370 2217274 - 2217298 + T 100 -16.5 -3.92324 | opp_overlap 2217274 AGAATACACAAAAAA GGGCAAGCGTT AAC AGCGCTTGCCC TTTGCTATTCAGACG TERM 2371 2217298 - 2217274 - T 100 -14.3 -5.48787 | opp_overlap 2217274 AGAATACACAAAAAA GGGCAAGCGTT AAC AGCGCTTGCCC TTTGCTATTCAGACG YPTS_2006 2218418 - 2217318 - | calcium/proton exchanger TERM 2372 2218469 - 2218455 - R 75 -8.5 -3.74693 | CTTTACTGTATTAAA CGGGC ATTAG GCCCG GTTAACGATAAATAA YPTS_2007 2220749 - 2218968 - | integral membrane sensor signal transduction histidine kinase TERM 2373 2220027 - 2220043 + g 70 -2.2 -4.87803 | opp_overlap 2220018 CAAAACCTGATTTTT CTGTTG TAAAT CAGCGG TTTTATTTACGACTC TERM 2374 2222266 - 2222228 - g 73 -5.3 -4.57837 | opp_overlap 2222237 2222239, overlap 2222236 2222237 2222239 ACACTTCCCCAAAAA CATCAAAATCAGCCACC CCGCT GGCGGCTATTTCTTATG GTTAGAATTGGAGCC YPTS_2008 2221179 - 2222480 + | GntR family transcriptional regulator YPTS_2009 2222496 - 2222645 + | hypothetical protein YPTS_2010 2222782 - 2222925 + | hypothetical protein YPTS_2011 2223027 - 2224367 + | succinylornithine transaminase family protein TERM 2375 2224368 - 2224356 - f 74 -6.3 -4.57073 | opp_overlap 2224355 2224356, overlap 2224358 CAGGTTTGTCAAAAA GTTAC GTC GTAAC GTTTATGCCGTAGGC TERM 2376 2224713 - 2224726 + G 71 -4.5 -4.58663 | opp_overlap 2224713 TCAATGTGTATAAAT CGGTG CCGA CACTG TTTTTGAGCAATGAT YPTS_2012 2224397 - 2225449 + | arginine N-succinyltransferase TERM 2377 2225620 - 2225633 + G 81 -9.5 -4.09685 | ACTCTGGCCTGCCAT GCCGC AAGA GCGGC TTTTCCGGCATGGGC TERM 2378 2225859 - 2225849 - g 71 -8.2 -3.70902 | CCGGCCATAGCCAAA CCCC AAT GGGG GACAGCATGTCAGTG YPTS_2013 2225446 - 2226963 + | succinylglutamic semialdehyde dehydrogenase TERM 2379 2227097 - 2227121 + G 90 -12.9 -3.63515 | opp_overlap 2227085 AAATCGTACTTCCAA CCCTCGTTTGG CAG CCAAACAAGGG TTATTGAAGATGAAA TERM 2380 2227175 - 2227164 - g 71 -7.2 -4.07877 | TTAGGCTACAAACAA GGGG TTCT CCCC CCTCAGGAGCGGCCG YPTS_2014 2226987 - 2228330 + | succinylarginine dihydrolase YPTS_2015 2228391 - 2229383 + | succinylglutamate desuccinylase YPTS_2016 2230091 - 2230789 + | porin YPTS_2017 2231612 - 2230833 - | IstB ATP binding domain-containing protein TERM 2381 2231531 - 2231545 + g 82 -11.4 -3.3506 | overlap 2231544 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPTS_2018 2232634 - 2231612 - | integrase catalytic region TERM 2382 2232585 - 2232600 + g 71 -4.6 -4.56914 | overlap 2232586 GCCCGGCTACTCATT CCCTGC TTGT GCAGGA TTTTAATTTCCATAA TERM 2383 2232656 - 2232638 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPTS_2019 2232693 - 2233133 + | porin TERM 2384 2233108 - 2233126 + T 71 -4.6 -4.58395 | CGGATGATGTTGTTG CGGTAA ACTTGAC TTACCG TTTTTAAGCAGTAGA TERM 2385 2233233 - 2233214 - T 86 -10.6 -3.82789 | opp_overlap 2233215, overlap 2233215 AATAGAAAGATAGAA CGGCGGGG GAAA CCCCGCCT TTGAGGTTATTGGCA TERM 2386 2233232 - 2233215 - T 95 -14.1 -2.88047 | opp_overlap 2233215, overlap 2233214 ATAGAAAGATAGAAC GGCGGGG GAAA CCCCGCC TTTGAGGTTATTGGC TERM 2387 2233215 - 2233232 + T 100 -14.1 -3.72051 | opp_overlap 2233215 2233214 ATAGAAAGATAGAAC GGCGGGG GAAA CCCCGCC TTTGAGGTTATTGGC TERM 2388 2233577 - 2233593 + T 71 -4.3 -4.80882 | overlap 2233580 GTCAGCAGCCTGAAA GGTGGGG GAA TCCCGTC TTTTTACTGTGAGCT YPTS_2020 2234534 - 2233728 - | N-formylglutamate amidohydrolase YPTS_2021 2235826 - 2234531 - | imidazolonepropionase TERM 2389 2235906 - 2235884 - R 70 -7.1 -3.9009 | AACCTAGCCTATAAA TTCACTATC AGCAA GATAGCGAA TTCACAATTGCGTAA YPTS_2022 2236722 - 2235955 - | histidine utilization repressor YPTS_2023 2236870 - 2238240 + | formiminoglutamate deiminase YPTS_2024 2238240 - 2238812 + | hypothetical protein YPTS_2025 2240981 - 2238990 - | chorismate binding-like protein TERM 2390 2239089 - 2239117 + g 78 -5.3 -4.89477 | GTCTGCTTGATGGGT GATTTCGGTTCCG GCT CGTAATCCAAATC TTTTATTCTTACGGG YPTS_2026 2241618 - 2242625 + | 3-oxoacyl-(ACP) synthase III YPTS_2027 2242639 - 2243655 + | NAD-dependent epimerase/dehydratase YPTS_2028 2243648 - 2244454 + | beta-lactamase domain-containing protein YPTS_2029 2244451 - 2245737 + | adenylate-forming enzyme TERM 2391 2245911 - 2245930 + G 74 -9.2 -3.727 | CATCGGGGTTTATTG GCGGGGCA TTTA TGCGCCGC TTTGCCTGTCATGAC YPTS_2030 2245871 - 2246833 + | NAD-dependent epimerase/dehydratase YPTS_2031 2246833 - 2247987 + | putative glycosyl transferase TERM 2392 2248516 - 2248528 + G 73 -5.5 -4.63486 | ACCCAGCATTACTGA CGCTT TGT GAGCG TTTTATTGCGGCAGT YPTS_2032 2247984 - 2248568 + | hypothetical protein YPTS_2033 2248565 - 2249752 + | putative glycosyl transferase YPTS_2034 2250377 - 2249913 - | hypothetical protein TERM 2393 2250510 - 2250488 - R 77 -6.3 -4.65933 | CATCTTTAAAAGAAA GCAGACAAC ATTTA ATTGCCTGC TCCTCAATATTGCCA YPTS_2035 2252265 - 2250547 - | hypothetical protein YPTS_2036 2254491 - 2252329 - | Sel1 domain-containing protein TERM 2394 2254208 - 2254226 + g 73 -2.5 -5.04385 | gap 1 CGTTCACTTAAGATC TCAACGAG CAAA CTC-TTGA TTTTTTCCGCGTATA YPTS_2037 2254706 - 2254864 + | hypothetical protein YPTS_2038 2255069 - 2257180 + | Sel1 domain-containing protein YPTS_2039 2257427 - 2258065 + | ribose/galactose isomerase YPTS_2040 2258859 - 2258200 - | methyltransferase type 12 TERM 2395 2258604 - 2258620 + g 72 -10.9 -2.52023 | opp_overlap 2258592, overlap 2258593 2258603 2258601 2258607 CAATGCGATTGCTGG CAACAGC AAG GCTGTTG GTATTGATATCCATC YPTS_2041 2259644 - 2258964 - | short-chain dehydrogenase/reductase SDR TERM 2396 2259708 - 2259679 - R 87 -8.5 -4.57353 | gap 1, opp_overlap 2259679 GGCTATTAGATAAAA GCCGGGTGTGA-GA AGA CCGCCACTCCCGGC TTGAGTCACTAAGTT YPTS_2042 2259939 - 2259796 - | hypothetical protein TERM 2397 2259991 - 2259973 - R 70 -9.6 -2.78695 | opp_overlap 2259972 2259971, overlap 2259972 TTGAGATAAAGTAAT CCGCTAAC TAT ATTAGCGG GGTTTTGGACTCATG YPTS_2043 2260935 - 2259985 - | hypothetical protein YPTS_2044 2261854 - 2260922 - | hypothetical protein TERM 2398 2261091 - 2261107 + g 83 -2.2 -5.59357 | overlap 2261083 GCTTTATGATTGTGT GCGATC TTTTC GATAGC TTTTTTTGATCTCAT YPTS_2045 2262765 - 2261860 - | hypothetical protein TERM 2399 2263424 - 2263455 + r 84 -10.9 -3.63515 | opp_overlap 2263423 2263422 GGCAACGAAGTAAGT CCCCAGGCGCTTA CATAAA TAAGTACCTGGGG TTGTTGAGCGTAGCC TERM 2400 2263510 - 2263537 + r 85 -4 -5.5112 | opp_overlap 2263510 2263507, overlap 2263511 ACGAGTATATAAGCA GTAGTGGAGCCG TCAA CGACCCCACTAA TTTTTTATTACTGAA TERM 2401 2263511 - 2263536 + r 70 -7.5 -3.89587 | opp_overlap 2263510 2263507, overlap 2263510 CGAGTATATAAGCAG TAGTGGAGCCG TCAA CGACCCCACTA ATTTTTTATTACTGA YPTS_2046 2264618 - 2263545 - | hypothetical protein TERM 2402 2264013 - 2264003 - G 73 -3.2 -4.87133 | AGTGTGTAAACAAAA TAGC CGG GCCA GATTTATCCACTACG YPTS_2047 2265301 - 2264831 - | cupin 2 domain-containing protein YPTS_2048 2265778 - 2265356 - | carboxymuconolactone decarboxylase TERM 2403 2265957 - 2265933 - R 82 -8.6 -4.30104 | opp_overlap 2265938, overlap 2265930 2265936 TAAAGCAAGAAAGAA GAAGAGGAGG GAGAT CCTCCTCTTA AACCTGTATGCAAAA TERM 2404 2265954 - 2265936 - R 91 -10.3 -4.22676 | opp_overlap 2265938, overlap 2265930 2265933 AGCAAGAAAGAAGAA GAGGAGG GAGAT CCTCCTC TTAAACCTGTATGCA YPTS_2049 2267440 - 2266055 - | heavy metal sensor signal transduction histidine kinase TERM 2405 2266757 - 2266780 + g 71 -4.4 -4.67904 | overlap 2266759 TTCCTGCCGTTCGAG CACGCCGTTG AATG CGACGGCCAG TTTTTGCAGTTCATC YPTS_2050 2268144 - 2267452 - | two component heavy metal response transcriptional regulator TERM 2406 2267545 - 2267556 + g 76 -7.2 -4.3739 | GGGCGTATCTATTTT CGCC CGCA GGCG TTTTATCGCCACCTC TERM 2407 2268226 - 2268255 + H 93 -8.7 -4.46112 | overlap 2268228 2268229 2268237 2268249 CCAACACCAGGCTGA CATTTTCCTGACA TTTT TGTCAGGAAAGTA TTTCTTTAACTGACA TERM 2408 2268228 - 2268253 + H 95 -11.3 -3.83744 | overlap 2268226 2268229 2268237 2268249 AACACCAGGCTGACA TTTTCCTGACA TTTT TGTCAGGAAAG TATTTCTTTAACTGA TERM 2409 2268229 - 2268252 + H 89 -12.6 -2.89523 | overlap 2268228 2268226 2268237 2268249 ACACCAGGCTGACAT TTTCCTGACA TTTT TGTCAGGAAA GTATTTCTTTAACTG YPTS_2051 2268409 - 2269500 + | hypothetical protein YPTS_2052 2269691 - 2270356 + | flavodoxin TERM 2410 2270794 - 2270808 + G 83 -7.1 -4.73682 | opp_overlap 2270793, overlap 2270773 TTTTTCTGTAAAATC TGGCG TATTT CGCCA TTTTCTCTTCTGGCG TERM 2411 2270865 - 2270875 + G 73 -3.2 -4.83615 | CAGTATTGCGGTATA CGGA GTG TCTG TTTTTATGGGGCGTG YPTS_2053 2270371 - 2271066 + | hypothetical protein YPTS_2054 2272115 - 2271273 - | hypothetical protein TERM 2412 2272142 - 2272159 + r 100 -11.3 -4.47485 | opp_overlap 2272142 ATATGAAAACAAAAA TCCACGC AATT GCGTGGA TTTTATAGCATTTTT TERM 2413 2272159 - 2272142 - R 100 -11.3 -5.52079 | opp_overlap 2272142 ATATGAAAACAAAAA TCCACGC AATT GCGTGGA TTTTATAGCATTTTT YPTS_2055 2273313 - 2272222 - | GTP-binding protein YchF YPTS_2056 2274098 - 2273478 - | peptidyl-tRNA hydrolase TERM 2414 2273634 - 2273618 - G 73 -7.3 -4.18018 | opp_overlap 2273618 GGGGTTTACCCAAAA CAAAGCC AGT GACTTTG CTTTTATCACCAGGA TERM 2415 2274203 - 2274233 + H 73 -8.5 -3.68836 | AAAAATAATTGTATA GTTGAATGATTTT CCTTC GGAATCATTCAAC TTCTTGGCTAAATAT YPTS_2057 2274430 - 2274702 + | membrane protein TERM 2416 2274769 - 2274734 - T 80 -9 -3.92577 | opp_overlap 2274739, overlap 2274739 GAATCTTCAAAAACA GAAAACCCGTTGTCGC ACAG GCTTCAACGGGTTTTT CTTTATCTGCTTCAA TERM 2417 2274739 - 2274764 + T 100 -8.9 -5.42975 | opp_overlap 2274739 2274734 TTCAAAAACAGAAAA CCCGTTGTCGC ACAG GCTTCAACGGG TTTTTCTTTATCTGC TERM 2418 2274764 - 2274739 - T 100 -8.9 -4.98672 | opp_overlap 2274739, overlap 2274734 TTCAAAAACAGAAAA CCCGTTGTCGC ACAG GCTTCAACGGG TTTTTCTTTATCTGC YPTS_2058 2275851 - 2274904 - | ribose-phosphate pyrophosphokinase YPTS_2059 2276039 - 2275911 - | hypothetical protein YPTS_2060 2277091 - 2276192 - | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPTS_2061 2277716 - 2277093 - | outer membrane lipoprotein LolB YPTS_2062 2277968 - 2279284 + | glutamyl-tRNA reductase TERM 2419 2279673 - 2279692 + G 80 -7.1 -4.60487 | opp_overlap 2279661, overlap 2279675 AATCCGCGCGGGGAC TGGCGGC GATGAA GCCGCTA TTTTTGCCGGTGATA YPTS_2063 2279317 - 2280399 + | peptide chain release factor 1 YPTS_2064 2280399 - 2281229 + | protein-(glutamine-N5) methyltransferase, release factor-specific YPTS_2065 2281293 - 2281694 + | invasion gene expression up-regulator SirB YPTS_2066 2281691 - 2282500 + | SirB1 protein YPTS_2067 2282596 - 2283450 + | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 2420 2283557 - 2283536 - T 100 -13.1 -3.2794 | GCTCATCGAGATTAA TGAGCCTCA TCCC TGAGGCTCA CCCTACGGGCAGCAT TERM 2421 2283787 - 2283764 - T 100 -11 -5.46657 | overlap 2283778 2283782 TAGGGCAATAAAAAA GGCAGCGTAG GCAA CTAAGCTGCC TCAGACTGCTGACAA TERM 2422 2283876 - 2283850 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2283859, overlap 2283851 2283866 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2423 2283877 - 2283851 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2283859, overlap 2283850 2283866 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2424 2283956 - 2283977 + T 100 -8.7 -5.1861 | opp_overlap 2283950, overlap 2283976 TGTCAATAACCTCAC GCAGCGTAG GTAA CTAAGCTGC TTTTTTGATAATCAA YPTS_2068 2285695 - 2283998 - | sulfate transporter TERM 2425 2286528 - 2286507 - R 100 -6.5 -5.95166 | TGTAACCAAAAAAAA GGCCCCGAC TTTC GTCAGAACC TTATTTTTGAATTTG TERM 2426 2286630 - 2286667 + r 88 -12.7 -2.62184 | CACTCAGACACCTCA CCGTTTCGTTGCGCCGT TATA GTGGTGCAACGGGGCGG TACTATAGGGGGCGA TERM 2427 2286791 - 2286777 - R 74 -10 -3.18452 | ATTAGGTGAATTTAA CGCCAA TTT TTGGCG GTGGCGGGGGAGTCA YPTS_2070 2287648 - 2286773 - | glycerophosphoryl diester phosphodiesterase TERM 2428 2287861 - 2287833 - R 75 -10.3 -2.87564 | overlap 2287853 TCATTCGCTGATACA GTCGCCGTTTCGT CGA ACAATACAGCGAC TGTACCCGCCAGGGA YPTS_2071 2289031 - 2287949 - | extracellular solute-binding protein YPTS_2072 2289887 - 2289051 - | binding-protein-dependent transport systems inner membrane component YPTS_2073 2290750 - 2289884 - | binding-protein-dependent transport systems inner membrane component TERM 2429 2290087 - 2290076 - G 85 -7.2 -4.87665 | GGCGACCGAGAAAAA GGCG AAAT CGCC CAGTGCACCGATAAA YPTS_2074 2291814 - 2290747 - | ABC transporter related YPTS_2075 2292028 - 2292858 + | glycerophosphoryl diester phosphodiesterase YPTS_2076 2292872 - 2293984 + | ROK family protein TERM 2430 2294102 - 2294089 - f 76 -2.5 -5.252 | opp_overlap 2294082 TACTGGTATAAAAAA TTTAT TGAT ATAAA ACAGTGATTGATACA TERM 2431 2294231 - 2294211 - f 100 -10.4 -5.48213 | opp_overlap 2294211 GATGCAAAAGAAAAA CCCCAACC ATAAA GGTCGGGG TTTATTATTTGGCGG TERM 2432 2294211 - 2294231 + F 87 -8.2 -4.56978 | opp_overlap 2294211 GATGCAAAAGAAAAA CCCCAACC ATAAA GGTCGGGG TTTATTATTTGGCGG TERM 2433 2294450 - 2294466 + F 73 -7.3 -4.16016 | overlap 2294442 AAAGTTATAGCAATT TGCTGAT TTC ATCGGCA TTTATTGAGGGATAC YPTS_2077 2294619 - 2295356 + | phosphotransferase domain-containing protein YPTS_2078 2295393 - 2295953 + | cytoplasmic chaperone TorD family protein TERM 2434 2296332 - 2296364 + T 76 -7.8 -4.19817 | overlap 2296333 TAGATTCATCGGGAT GCATTCGCTTGC TGTTTTGTT GCAAGCGAATGA TTTTGGGTAGATGGG TERM 2435 2296333 - 2296363 + T 84 -11.3 -3.11569 | overlap 2296332 AGATTCATCGGGATG CATTCGCTTGC TGTTTTGTT GCAAGCGAATG ATTTTGGGTAGATGG TERM 2436 2296398 - 2296439 + T 78 -8.7 -3.80625 | GTAGCGTGAAATGAC CTGCGCCGGTTAGTCAGTC AATG GGATGACTAATTGGCCCGG TTTAACTTCTAACCC YPTS_2079 2296970 - 2296407 - | hypothetical protein TERM 2437 2296841 - 2296853 + g 71 -4.9 -4.62302 | TACCGATCTGTTTTT CATAA TTA TTATG TTTTTGCAGGTATTC TERM 2438 2297417 - 2297370 - R 79 -10.8 -3.14931 | gap 1, opp_overlap 2297382 CGTATGCGCGAGGAA TGT-GCTTATCAACCGGAAAGGC AAA ACGTCTCCGGTTGATAAGGGACA TAACGTTAGCTGCTG YPTS_2080 2298628 - 2297423 - | major facilitator transporter YPTS_2081 2298922 - 2299506 + | GCN5-related N-acetyltransferase TERM 2439 2300161 - 2300124 - g 82 -5.5 -5.0133 | opp_overlap 2300146, overlap 2300126 TAGCCCTTGAAAAAA CAGCCCTTGAAGCTAGG GTTG CCCAGCTTGAACAGCAG GTTATCCAGTTGTCA YPTS_2082 2299514 - 2300215 + | hypothetical protein TERM 2440 2300410 - 2300424 + G 85 -7.1 -4.88736 | TGGATACGCTCGCTG CGGCA AGTGA TGCCG TTTTTGTCCATAGTA YPTS_2083 2300226 - 2301137 + | oxidoreductase domain-containing protein TERM 2441 2301340 - 2301366 + F 71 -8.7 -3.34894 | opp_overlap 2301344, overlap 2301338 2301341 2301344 CCCCCATTGGGTAGA GCAACGCCTGC AGACC GTAGGCGTTGG TATTTACAGCACATT TERM 2442 2301341 - 2301365 + F 83 -12.2 -2.60615 | opp_overlap 2301344, overlap 2301340 2301338 2301344 CCCCATTGGGTAGAG CAACGCCTGC AGACC GTAGGCGTTG GTATTTACAGCACAT TERM 2443 2301511 - 2301523 + G 89 -6.2 -5.28826 | ATTTGGTGCAGGTAT GGCG ACGGA CGCC TTTTTTGTGGCATTT YPTS_2084 2301404 - 2302939 + | integral membrane protein MviN TERM 2444 2303038 - 2303022 - f 71 -9.4 -2.96538 | opp_overlap 2303022 ACAATGTATTATATA GCCCGA TAATT TCGGGC TTTTTTACATATTTA TERM 2445 2303022 - 2303038 + F 100 -9.4 -5.18561 | opp_overlap 2303022 ACAATGTATTATATA GCCCGA TAATT TCGGGC TTTTTTACATATTTA TERM 2446 2303246 - 2303264 + F 77 -4.6 -5.0133 | TGAATTTTTTTTTAA CGTGTATT TTT AATGCATG TTTTTTAAAAAACTA TERM 2447 2303292 - 2303277 - f 70 -2.6 -5.00884 | overlap 2303278 ATGTTTTTTAAAAAA CTAAAC TTTG GTTTAA CCCGCACATCTAGTG TERM 2448 2304106 - 2304135 + G 91 -11.5 -3.98107 | opp_overlap 2304115, overlap 2304099 CAAGAGTGTCACTGG CTTTAGATAGCCC ATTT GGGCTATCTGACG TTATTAATTTTAATG YPTS_2085 2303373 - 2305034 + | hemolysin activator HlyB domain-containing protein TERM 2449 2307392 - 2307406 + T 73 -5.7 -4.56597 | opp_overlap 2307390 2307392 GTGATAATAAACACA CCCAA AAATA TTGGG TTTTTCACCGCAAAA TERM 2450 2307914 - 2307900 - T 70 -5.7 -4.26076 | overlap 2307911 GCAGTCGTACCAAAA CGTCA GACAA TGACG CGTTAGCGTTGGTTA TERM 2451 2310000 - 2310013 + T 100 -9.5 -5.07107 | CTAATCGTTTTTTAA GGCCC CGAG GGGCC TTTTTTGACGATTTA TERM 2452 2310041 - 2310067 + T 89 -10.2 -3.95674 | TTACATCCGCTCAAC GGTTTGAATACC CAA GGTATCCAGACC TTGTTTCAGCGTTTT YPTS_2088 2311756 - 2310026 - | arginyl-tRNA synthetase YPTS_2089 2312309 - 2312884 + | hypothetical protein TERM 2453 2313289 - 2313306 + G 74 -2.7 -5.06414 | gap 1, overlap 2313293 GGTTCATCCGATAGT TCGGCCAC GTG GTGG-TGA TTTTTGTTACAGCAG YPTS_2090 2313116 - 2313880 + | CutC family protein TERM 2454 2314043 - 2314067 + T 100 -10 -4.80959 | ATATAACGAACGGTA TCCCCCATCT GGGTG AGTTGGGGGA TTTTCTTATGGCTTA YPTS_2091 2315044 - 2314073 - | methyltransferase YPTS_2092 2315844 - 2315041 - | methyltransferase TERM 2455 2315121 - 2315137 + g 70 -2.1 -4.94992 | opp_overlap 2315120, overlap 2315122 CCGCGTGTTCAAACC CCGCCTG ATG CAGACGA TTTTTGTGGGTTTCC TERM 2456 2315975 - 2315959 - R 100 -10.8 -4.46072 | GGGAATAAACATAAA GGCGGC GATAT GCCGCC CAGACTAACGGTTGC YPTS_2093 2316430 - 2316035 - | hypothetical protein YPTS_2094 2317425 - 2316610 - | hypothetical protein TERM 2457 2318079 - 2318052 - H 77 -8.6 -3.92542 | opp_overlap 2318055, overlap 2318055 CTGAGGTTGAAACAA TAACGCGTTA ATACAACA TAACGCGTTA ATAAAACAATAAAGT TERM 2458 2318373 - 2318386 + G 73 -2.3 -5.16841 | TAACCGTCGTCGTGA TCTGG GTGG CCTGA TTTTTATTGATATGC YPTS_2095 2318287 - 2320083 + | aspartyl-tRNA synthetase TERM 2459 2320450 - 2320464 + G 78 -11.4 -3.0263 | ACCAGTGGTTGGATG CGGCAG AGG CTGCCG TATTGACCAAGTCCT YPTS_2096 2320083 - 2320526 + | NUDIX hydrolase TERM 2460 2320631 - 2320617 - g 75 -5.6 -4.66537 | overlap 2320619 2320627 TGGGCCAACACAAAA CACCGC AAA GCGGCA CAGGATGCCAAACGC TERM 2461 2320629 - 2320619 - g 73 -8.2 -3.94773 | overlap 2320617 2320627 GGCCAACACAAAACA CCGC AAA GCGG CACAGGATGCCAAAC YPTS_2097 2320584 - 2321327 + | hypothetical protein YPTS_2098 2321536 - 2322057 + | crossover junction endodeoxyribonuclease RuvC TERM 2462 2322096 - 2322115 + F 100 -12.2 -5.34555 | opp_overlap 2322096, overlap 2322111 TTAACTGTTATCACA GGCTGGAT ATCC ATCCAGCC TTTTTTATGCTATAA TERM 2463 2322115 - 2322096 - f 83 -12.2 -2.79831 | opp_overlap 2322096 2322111 TTAACTGTTATCACA GGCTGGAT ATCC ATCCAGCC TTTTTTATGCTATAA TERM 2464 2322417 - 2322400 - g 77 -6.3 -4.58663 | gap 1 ATCATTCTGGAAAAA CAGCCACC GCT GGTG-CTG CTGGAAACAAACGGT TERM 2465 2322734 - 2322720 - g 73 -5.6 -4.56597 | opp_overlap 2322722, overlap 2322722 GGGTGTCGGTAAAAA GACCGC CGA GCGGTT AGTGGTCGAAATGAA TERM 2466 2322732 - 2322722 - g 73 -8.2 -3.90048 | opp_overlap 2322722, overlap 2322720 GTGTCGGTAAAAAGA CCGC CGA GCGG TTAGTGGTCGAAATG YPTS_2099 2322364 - 2322978 + | Holliday junction DNA helicase RuvA YPTS_2100 2323140 - 2324144 + | Holliday junction DNA helicase RuvB TERM 2467 2324141 - 2324199 + T 72 -9.8 -2.85803 | gap 1, opp_overlap 2324145 2324147, overlap 2324125 TATTACTCGGGAAGA ATAATACGTTTCACGCTGTGGGGGTTA TAGACC TAAACCCCACAGCGTGAAGTG-ATGAC TATCCTCGTGCTTTT TERM 2468 2324195 - 2324145 - T 89 -10.6 -3.94877 | gap 1, opp_overlap 2324125 2324141, overlap 2324147 ACTCGGGAAGAATAA TACGTTTCACGCTGTGGGGGTTA TAGACC TAAACCCCACAGCGTGAAGTG-A TGACTATCCTCGTGC TERM 2469 2324194 - 2324147 - T 100 -15.7 -3.56318 | opp_overlap 2324141, overlap 2324145 TCGGGAAGAATAATA CGTTTCACGCTGTGGGGGTTA TAGACC TAAACCCCACAGCGTGAAGTG ATGACTATCCTCGTG YPTS_2101 2324984 - 2324199 - | ABC-3 protein TERM 2470 2324927 - 2324914 - G 75 -5.9 -4.61566 | CGCCAAACGACAAAA GACCC CAGC GGGCC AGCGGCTGTTGCCAG YPTS_2102 2325742 - 2324981 - | ABC transporter related TERM 2471 2325429 - 2325445 + g 74 -4.3 -5.00616 | opp_overlap 2325408 TGCACCCGTGTGAGT GCAGGCA GAA TGTCGGC TTTTTTCACCCCCGG YPTS_2103 2325815 - 2326771 + | periplasmic solute binding protein TERM 2472 2326840 - 2326866 + G 73 -10.1 -3.14468 | TATAACAATCTTCCT CGACCCCATCG CATCA TGTTGGGGTCG TTGACTGTAATGACA TERM 2473 2326884 - 2326904 + G 83 -8.2 -4.60797 | GACTGTAATGACACT GGCCGTCG CTGTT TGGCGGCC TTTTATCTATCACCC YPTS_2104 2326792 - 2328108 + | peptidase M23 TERM 2474 2328115 - 2328138 + TF 73 -8.8 -3.5511 | overlap 2328113 2328117 CTGGATTAGCAGTGA TACCGTCAGG TTAG CCTGTCGGTG TGTTTATCCCTAAGC TERM 2475 2328117 - 2328136 + TF 74 -9.2 -3.34988 | overlap 2328115 2328113 GGATTAGCAGTGATA CCGTCAGG TTAG CCTGTCGG TGTGTTTATCCCTAA TERM 2476 2328148 - 2328182 + TF 100 -15.2 -3.74077 | overlap 2328153 TCGGTGTGTTTATCC CTAAGCTGCCAGTG AGTTGAG CACTGGCAGTTTAG TTTCAGTCTGTCAGC TERM 2477 2328153 - 2328177 + TF 100 -11.5 -4.09556 | overlap 2328148 GTGTTTATCCCTAAG CTGCCAGTG AGTTGAG CACTGGCAG TTTAGTTTCAGTCTG YPTS_2106 2329524 - 2329243 - | hypothetical protein YPTS_2105 2328375 - 2329337 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2478 2329458 - 2329437 - GT 100 -15.9 -4.36595 | opp_overlap 2329433 2329432 CAGTTAAAGGTAAAA GGCCCGCTA GTGA TAGCGGGCC TGAGGTTATTGACAA TERM 2479 2329536 - 2329562 + Tr 72 -10.1 -2.88849 | gap 1, opp_overlap 2329525, overlap 2329531 2329537 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2480 2329537 - 2329563 + Tr 84 -10.1 -3.82218 | gap 1, opp_overlap 2329525, overlap 2329531 2329536 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2481 2329621 - 2329652 + Tr 100 -10.8 -4.46757 | overlap 2329626 GGGGTTTGTCAGCAG TCTGAGGCCCGCTA GTGA TAGCGGGCCTTTGC TTTTCTGCCTATCTT TERM 2482 2329626 - 2329647 + Tr 100 -15.9 -4.27483 | overlap 2329621 TTGTCAGCAGTCTGA GGCCCGCTA GTGA TAGCGGGCC TTTGCTTTTCTGCCT YPTS_2107 2331119 - 2329677 - | pyruvate kinase TERM 2483 2330265 - 2330315 + g 71 -3.9 -4.68908 | gap 1, overlap 2330273 CATTGACTCCATCAT CTGAGTCGCCGTGATC-ACGGC ACGGTTTA GCTGGCGGGCACGGCGGATCAG TTTCTTTTGGATACC YPTS_2108 2332386 - 2331481 - | RpiR family transcriptional regulator YPTS_2109 2332703 - 2334187 + | glucose-6-phosphate 1-dehydrogenase TERM 2484 2334241 - 2334206 - f 78 -9.7 -3.42574 | overlap 2334208 2334209 CTAACCGCACGATAA TAGCGCGCCACCAGA GGCGAA TCTGATGGCGCGTGA CTGCCAGGGAGAGCA TERM 2485 2334239 - 2334208 - f 95 -12.3 -3.28219 | overlap 2334206 2334209 AACCGCACGATAATA GCGCGCCACCAGA GGCGAA TCTGATGGCGCGT GACTGCCAGGGAGAG TERM 2486 2334238 - 2334209 - f 100 -15.8 -2.56449 | overlap 2334208 2334206 ACCGCACGATAATAG CGCGCCACCAGA GGCGAA TCTGATGGCGCG TGACTGCCAGGGAGA YPTS_2110 2334231 - 2334422 + | hypothetical protein YPTS_2111 2334429 - 2335070 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase TERM 2487 2335123 - 2335149 + F 100 -11.6 -5.03314 | opp_overlap 2335121 2335123 2335127 2335128, overlap 2335128 TATTTTCACCAAAGA CAGAGCCTCTGC ATT GCAGGGGTTTTG TTTTTTCAGAATCGC TERM 2488 2335128 - 2335144 + F 100 -10.1 -5.42198 | opp_overlap 2335123 2335127 2335121 2335128, overlap 2335123 TCACCAAAGACAGAG CCTCTGC ATT GCAGGGG TTTTGTTTTTTCAGA YPTS_2112 2335785 - 2336228 + | small multidrug resistance protein YPTS_2113 2336215 - 2336544 + | small multidrug resistance protein TERM 2489 2336591 - 2336564 - T 70 -9.8 -2.52015 | opp_overlap 2336565, overlap 2336563 GCCAGAGGCAGTAAG CGGAGGGTAGCC TGGC GGCTACTCTCCT TTGTTTTTGTGGCTT TERM 2490 2336565 - 2336590 + T 100 -15.5 -4.97405 | opp_overlap 2336564 2336563 CCAGAGGCAGTAAGC GGAGGGTAGCC TGGC GGCTACTCTCC TTTGTTTTTGTGGCT YPTS_2114 2337054 - 2336710 - | endoribonuclease L-PSP TERM 2491 2337747 - 2337734 - g 74 -9.5 -3.53012 | TGTTTTGTGGTGAAA GCCCG TCGT CGGGC GATGGATGCTGATGT TERM 2492 2337763 - 2337782 + G 100 -10 -4.82901 | opp_overlap 2337775 GATGGATGCTGATGT GGTGGTGG TAAA CCACCATC TTTTTCTGGCGGACA TERM 2493 2338360 - 2338349 - g 78 -5.8 -4.7497 | opp_overlap 2338349 2338348 TTGATTGAGGAAAAA CCAG GCAC CTGG ATTTTTACCTCAGCG YPTS_2115 2337185 - 2339089 + | helicase c2 YPTS_2116 2339161 - 2339859 + | peptidase M22 glycoprotease YPTS_2117 2339996 - 2340601 + | Slp family outer membrane lipoprotein TERM 2494 2340639 - 2340622 - f 100 -9.1 -4.82901 | gap 1 TTTGGGCCACAAAAA GGCGC-GG AGT CCAGCGCC TGAGGTTATTGACAA TERM 2495 2340718 - 2340744 + F 72 -7.2 -3.9749 | gap 1, opp_overlap 2340706, overlap 2340717 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 2496 2340807 - 2340824 + F 100 -12.7 -4.64844 | TTGTCAGCAGTCAGA GGCGCTG AGTC CAGCGCC TTTTCTATATCTACA YPTS_2118 2341255 - 2342943 + | AMP-dependent synthetase and ligase TERM 2497 2342998 - 2342962 - f 100 -14.6 -3.767 | gap 1, opp_overlap 2342963 2342966, overlap 2342963 2342965 2342969 2342972 GACGGAGTCACTAAA TCATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TGT TTGTTATCGAACTAT TERM 2498 2342963 - 2342997 + F 100 -18.1 -4.31433 | gap 1, opp_overlap 2342963 2342962 2342965 2342969 2342972, overlap 2342966 ACGGAGTCACTAAAT CATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TG TTTGTTATCGAACTA TERM 2499 2342997 - 2342963 - f 100 -18.1 -2.85699 | gap 1, opp_overlap 2342963 2342966, overlap 2342962 2342965 2342969 2342972 ACGGAGTCACTAAAT CATCAACAACGCCGGT TATC ACCGGCGTTGTTG-TG TTTGTTATCGAACTA TERM 2500 2342996 - 2342965 - f 100 -17.4 -2.97667 | opp_overlap 2342963 2342966, overlap 2342963 2342962 2342969 2342972 GGAGTCACTAAATCA TCAACAACGCCGGT TATC ACCGGCGTTGTTGT GTTTGTTATCGAACT TERM 2501 2342966 - 2342995 + F 100 -20.9 -3.75817 | opp_overlap 2342965 2342963 2342962 2342969 2342972, overlap 2342963 GAGTCACTAAATCAT CAACAACGCCGGT TATC ACCGGCGTTGTTG TGTTTGTTATCGAAC TERM 2502 2342992 - 2342969 - f 100 -16.8 -3.34227 | opp_overlap 2342966 2342963, overlap 2342965 2342963 2342962 2342972 TCACTAAATCATCAA CAACGCCGGT TATC ACCGGCGTTG TTGTGTTTGTTATCG TERM 2503 2342989 - 2342972 - f 100 -12.7 -3.79909 | opp_overlap 2342966 2342963, overlap 2342969 2342965 2342963 2342962 CTAAATCATCAACAA CGCCGGT TATC ACCGGCG TTGTTGTGTTTGTTA TERM 2504 2344038 - 2344018 - g 77 -2.6 -5.24129 | opp_overlap 2344018, overlap 2344020 CCGGGGTACAAAAAA GTCTTTAA AGATA TTAAAGCC TTGATTCAATCGGTC YPTS_2119 2343064 - 2344224 + | ribonuclease D TERM 2505 2344247 - 2344276 + T 70 -10.1 -2.54204 | opp_overlap 2344242 2344244 2344265, overlap 2344246 2344245 2344272 2344273 TGATATTAATCAGCC TTCAGGGTGGGAT ATTA ATTCCACGCTGAA ACTTTTCAGTTTTAA TERM 2506 2344272 - 2344285 + T 73 -5.3 -4.61873 | opp_overlap 2344265 2344244, overlap 2344247 2344246 2344245 2344273 GATATTAATTCCACG CTGAA ACTT TTCAG TTTTAATTTATGAAC TERM 2507 2344449 - 2344418 - T 100 -17.5 -3.43117 | opp_overlap 2344421, overlap 2344421 ACAGTCAATTGAGAA TAACGCCCCTGTA AATAAA TACAGGGGCGTTA TTGAGAAGAAATCAT TERM 2508 2344421 - 2344446 + T 100 -14.8 -3.61517 | opp_overlap 2344421 2344418 GTCAATTGAGAATAA CGCCCCTGTA AATAAA TACAGGGGCG TTATTGAGAAGAAAT TERM 2509 2344446 - 2344421 - T 100 -14.8 -3.84808 | opp_overlap 2344421, overlap 2344418 GTCAATTGAGAATAA CGCCCCTGTA AATAAA TACAGGGGCG TTATTGAGAAGAAAT YPTS_2120 2344730 - 2344461 - | cell division topological specificity factor MinE YPTS_2121 2345546 - 2344734 - | septum site-determining protein MinD YPTS_2122 2346257 - 2345571 - | septum site-determining protein MinC TERM 2510 2345927 - 2345942 + g 73 -4.6 -4.70879 | overlap 2345929 2345938 CCGGCGGACTGATGA CCGGCT CTGG AGCCAG TTTTTGGCCTTTACC TERM 2511 2346463 - 2346479 + H 74 -6.5 -4.55491 | TTGACCCCCTATATT TAGCGAC TCA GCCGCTA TTTTATGATTGCATA TERM 2512 2346483 - 2346494 + H 71 -3 -5.03145 | ACTCAGCCGCTATTT TATG ATTG CATA TTTTTTCAACACTTG YPTS_2123 2346978 - 2347250 + | hypothetical protein YPTS_2124 2347391 - 2348476 + | lytic murein transglycosylase YPTS_2125 2348547 - 2349203 + | fumarylacetoacetate (FAA) hydrolase TERM 2513 2349242 - 2349211 - f 82 -7.9 -4.45693 | overlap 2349212 2349213 TAATATAAAGAGAAA CGTGCCGTCCGAC TTTACT GTCGGGCGGCAAA ACTTGCATCTGTAAG TERM 2514 2349241 - 2349212 - f 74 -9.2 -3.25789 | overlap 2349211 2349213 AATATAAAGAGAAAC GTGCCGTCCGAC TTTACT GTCGGGCGGCAA AACTTGCATCTGTAA TERM 2515 2349240 - 2349213 - f 86 -12.7 -2.53847 | overlap 2349212 2349211 ATATAAAGAGAAACG TGCCGTCCGAC TTTACT GTCGGGCGGCA AAACTTGCATCTGTA YPTS_2126 2349306 - 2349752 + | hypothetical protein TERM 2516 2349786 - 2349807 + T 78 -8.7 -3.827 | TAACTTGCTTTAGCC GATGACAGC CTAA GCTGCCATC TTTACCTTCATTGTT YPTS_2127 2351025 - 2349853 - | major facilitator transporter TERM 2517 2350018 - 2350002 - G 82 -5.1 -5.0925 | overlap 2350004 GCGGAAAACCAAAAA TACCCAC GAA GTAGGCA ACGACAAACCAAGTC YPTS_2128 2352228 - 2351029 - | aminotransferase class V YPTS_2129 2352985 - 2352245 - | hypothetical protein TERM 2518 2353833 - 2353858 + H 70 -7.7 -3.65046 | opp_overlap 2353832 TTTTCTTTAATAGAT TCACTATTCCT GCGC AGGAATAATGA TTATTAACATAGCCA YPTS_2130 2354077 - 2354433 + | hypothetical protein TERM 2519 2354485 - 2354520 + F 73 -8.5 -3.66378 | opp_overlap 2354485 2354484 2354479 ATTGACTAATGAAAC TCAGATCAACAGG GGATGGAAAA TCTGTTGATCTGA TTTCAATCCAATCTG YPTS_2131 2354570 - 2354773 + | hypothetical protein TERM 2520 2354824 - 2354806 - T 100 -11.7 -4.98522 | opp_overlap 2354806 AATCTGATATAAAAA TGGCGCC AGAGA GGCGCCA TTGATAATAAAGATA TERM 2521 2354806 - 2354824 + T 84 -11.7 -3.21416 | opp_overlap 2354806 AATCTGATATAAAAA TGGCGCC AGAGA GGCGCCA TTGATAATAAAGATA YPTS_2132 2355380 - 2354850 - | disulphide bond formation protein DsbB YPTS_2133 2357190 - 2355616 - | Na+/H+ antiporter NhaB TERM 2522 2355839 - 2355827 - G 71 -4.7 -4.49316 | opp_overlap 2355828, overlap 2355828 AGCAGGAACAAGAAA GCGGC CTG GCCGT TTGGTGTCGCCACGG TERM 2523 2355828 - 2355838 + g 73 -8.2 -3.83026 | opp_overlap 2355827 2355828 GCAGGAACAAGAAAG CGGC CTG GCCG TTTGGTGTCGCCACG TERM 2524 2356026 - 2356015 - G 78 -5.8 -4.74917 | ATTAAACAGATAAAA CAGC GATA GCTG AGCGGAAGGCGAGGC TERM 2525 2356724 - 2356709 - G 75 -3.2 -5.00846 | overlap 2356710 TAAATAGTATAAAAA CCAACG GATA CGCTGA TAACTACCGCGATTA TERM 2526 2356857 - 2356846 - G 72 -5.8 -4.32857 | opp_overlap 2356846 TTTCGTAAATACAAA CAGC AGCA GCTG TTTCATAAAGTAGAT TERM 2527 2357821 - 2357803 - g 71 -3 -4.88736 | overlap 2357813 CATCATCCAGAAAAA GCGCAAGA AAT TTTGGCGC GAGCGAAAACAGTGG YPTS_2134 2357434 - 2358153 + | fatty acid metabolism transcriptional regulator FadR TERM 2528 2358324 - 2358340 + T 100 -10.1 -5.04385 | TTGTCAGCAGTTTGA GGGGCGT TTA ATGCCCC TTTTTTACCGATGTC YPTS_2135 2359906 - 2358371 - | SpoVR family protein TERM 2529 2359271 - 2359293 + g 74 -2.6 -5.0538 | CAGGGAATTCACTTG GCTTTGTAGA TAT TCTTCACGGC TTTTTTGGCGTGCGG TERM 2530 2361154 - 2361174 + G 78 -8.9 -3.97368 | overlap 2361150 CTACCGCGCTACTGG CCGGGCTGG TGT CTATCCCGG TTTATCCATTGAAGG TERM 2531 2361643 - 2361689 + G 81 -9.6 -3.98291 | opp_overlap 2361640, overlap 2361644 AGCCACTGAATATTG CCCCGTTACACGATATTCAC CCCATCC GTTAATATCGTGTAACGCGA TTATTTGCCGTTGTT TERM 2532 2361644 - 2361688 + G 83 -13.1 -2.9789 | opp_overlap 2361640, overlap 2361643 GCCACTGAATATTGC CCCGTTACACGATATTCAC CCCATCC GTTAATATCGTGTAACGCG ATTATTTGCCGTTGT YPTS_2136 2360370 - 2361674 + | FAD dependent oxidoreductase YPTS_2137 2362896 - 2361703 - | Bcr/CflA subfamily drug resistance transporter TERM 2533 2363135 - 2363099 - R 100 -15.4 -5.5112 | CTCATCAATAAAAAA TGCTATTACCTGCCCA GAGGG TAGACAGGTAATAGCA GACAGGTAATGGCGG YPTS_2138 2364030 - 2363161 - | pirin domain-containing protein TERM 2534 2364000 - 2364021 + g 80 -2.9 -5.3671 | CCCAATGTTGACGAG GTGCACGGT AAAT ACCTTGAAC TTTTTTCATTATCTT YPTS_2139 2364228 - 2365133 + | LysR family transcriptional regulator YPTS_2140 2366286 - 2365168 - | hypothetical protein TERM 2535 2365800 - 2365785 - G 71 -6.8 -4.20084 | AGCAGGCACCTAAAA TGGCCA GCGT CGGCCA TAATCCGGCAAATTG TERM 2536 2366382 - 2366344 - R 78 -5.3 -4.9792 | opp_overlap 2366344 TAGCCCATAGAAAAA GCCGGAAAATGCTTTCT GAACA AGAAAAAATTAACCGGC TGATATTGCTGCTAA YPTS_2141 2367668 - 2366394 - | hypothetical protein YPTS_2142 2367774 - 2367652 - | hypothetical protein TERM 2537 2367716 - 2367773 + g 70 -9.9 -3.14307 | gap 1 CCACCGGCCTCACAC TGTCCCTTTGTCCTTGGCGTTACAGC ATGGTTA GCGGCAACGCCAAGGACGTAGTG-CA TAGTTTTGCCTTCCT YPTS_2143 2369752 - 2367818 - | putative serine protein kinase, PrkA TERM 2538 2369494 - 2369522 + g 72 -10.4 -3.01712 | opp_overlap 2369492 GATAAGAAACAATCT GTTCTATGGCTT CCTCC ATGCCATAGAAC TCTTCAAACGCAGGA YPTS_2144 2370175 - 2370945 + | MltA-interacting MipA family protein TERM 2539 2370975 - 2370991 + T 100 -13.7 -5.0916 | opp_overlap 2370972 2370970 2370975 CTATGAGCAAGACCA TGGGGCC AAA GGCCCCA TTTTTATATTGACCG TERM 2540 2370991 - 2370975 - T 93 -13.7 -2.78495 | opp_overlap 2370975, overlap 2370972 2370970 CTATGAGCAAGACCA TGGGGCC AAA GGCCCCA TTTTTATATTGACCG YPTS_2145 2371893 - 2371018 - | aldose 1-epimerase TERM 2541 2372173 - 2372190 + r 90 -11.3 -3.65529 | opp_overlap 2372173 CTATAAACAAGAAAA GCCACTC GCGT GAGTGGC TTTAGGTAGAAATCT TERM 2542 2372190 - 2372173 - R 100 -11.3 -5.05116 | opp_overlap 2372173 CTATAAACAAGAAAA GCCACTC GCGT GAGTGGC TTTAGGTAGAAATCT YPTS_2146 2373212 - 2372217 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2543 2373480 - 2373498 + H 82 -2.4 -5.70522 | CAGTTTAGGACAATT TTAACTGC TTT GTTGTTAA TTTTTTGTTATTATT YPTS_2147 2373560 - 2373973 + | methionine-R-sulfoxide reductase YPTS_2148 2373942 - 2374316 + | hypothetical protein TERM 2544 2374431 - 2374410 - T 100 -13 -5.47159 | opp_overlap 2374410 TCTGAATACAAAAAA TGGGCGCC GAGGCA GGCGCCCA TTTTTGCGCAGAAAG TERM 2545 2374410 - 2374431 + T 100 -13 -4.56597 | opp_overlap 2374410 TCTGAATACAAAAAA TGGGCGCC GAGGCA GGCGCCCA TTTTTGCGCAGAAAG TERM 2546 2374453 - 2374478 + T 75 -10.5 -2.76696 | gap 1, opp_overlap 2374450, overlap 2374452 CGCAGAAAGCGATCA GTC-GGCTGAAG CGA CTTCAGCCAGGC ATTGTTCAAGAGCCA YPTS_2149 2375097 - 2374450 - | isochorismatase hydrolase YPTS_2150 2376128 - 2375112 - | L-asparaginase, type I TERM 2547 2376194 - 2376217 + r 77 -11 -2.80789 | opp_overlap 2376195, overlap 2376193 2376191 GCTCAGCGAGGAAAA ACAGCCCGAT GGGT ATCGGGCTGA ATATTTATCTGTATT TERM 2548 2376216 - 2376195 - R 100 -14.5 -4.7497 | opp_overlap 2376194 2376193 2376191 CTCAGCGAGGAAAAA CAGCCCGAT GGGT ATCGGGCTG AATATTTATCTGTAT YPTS_2151 2378095 - 2376245 - | signal peptide peptidase SppA, 67K type YPTS_2152 2378258 - 2378809 + | nitroreductase TERM 2549 2379224 - 2379236 + G 89 -3.4 -5.61596 | ACGGTGTTGGCATTA TCAG CACGA CTGA TTTTTTTATGCCGAT YPTS_2153 2379034 - 2380080 + | selenide, water dikinase YPTS_2154 2380095 - 2380187 + | hypothetical protein YPTS_2155 2380184 - 2382112 + | DNA topoisomerase III YPTS_2156 2382109 - 2382399 + | hypothetical protein YPTS_2157 2382798 - 2382412 - | NUDIX hydrolase YPTS_2158 2383682 - 2382876 - | exodeoxyribonuclease III TERM 2550 2383457 - 2383469 + g 78 -9.1 -4.015 | GGAAACCTCGGCGCA CAGCC AGT GGCTG TTCTTTCGTCAATAG TERM 2551 2383535 - 2383523 - G 75 -3.3 -5.0538 | GCCCATGGTAAAAAA CGTGG TAA CCATG CTGGCTGACGTCTTC YPTS_2159 2383992 - 2384120 + | hypothetical protein TERM 2552 2384645 - 2384633 - g 87 -6.3 -5.17054 | ATAATAGGGAAAAAA CTCTT TAA AAGAG AGAAATTTGGCATGA TERM 2553 2385037 - 2385012 - g 71 -7.1 -4.03137 | gap 1, opp_overlap 2385019 ATATAATTAATGAAA GTGAAG-ATATT ATA AATATTCTTCAC AGTAATGTTTGGTTA YPTS_2160 2384492 - 2385352 + | LysR family transcriptional regulator YPTS_2163 2386917 - 2386069 - | formyltetrahydrofolate deformylase YPTS_2164 2387465 - 2387001 - | SecC motif-containing protein TERM 2554 2387994 - 2388014 + H 95 -7.6 -4.9138 | opp_overlap 2387996 AATGTTTACGCTGAA TAGCCACC TTTAT GGTGGTTA TTTTGTTTGCGTACT YPTS_2165 2388799 - 2389815 + | response regulator receiver protein YPTS_2166 2390122 - 2391468 + | nucleotide sugar dehydrogenase YPTS_2167 2391478 - 2391645 + | hypothetical protein TERM 2555 2391847 - 2391870 + G 100 -15.4 -3.69323 | opp_overlap 2391847 TGAAAGACAAAAAAA CACCCTCCTA TTAA TAGGAGGGTG TTTCGATAGTAATAG TERM 2556 2391870 - 2391847 - g 100 -15.4 -5.88197 | opp_overlap 2391847 TGAAAGACAAAAAAA CACCCTCCTA TTAA TAGGAGGGTG TTTCGATAGTAATAG YPTS_2168 2391719 - 2391889 + | hypothetical protein YPTS_2169 2392310 - 2391903 - | histone family protein nucleoid-structuring protein H-NS TERM 2557 2392027 - 2392049 + g 77 -10.6 -3.5394 | overlap 2392033 2392046 TTATACTGATATTTA GCAGGACGTG CAG CACGTTTTGC TTTACCAGCAGCTTT TERM 2558 2392033 - 2392043 + g 77 -6.8 -4.54727 | overlap 2392027 TGATATTTAGCAGGA CGTG CAG CACG TTTTGCTTTACCAGC YPTS_2170 2393060 - 2393650 + | thymidine kinase TERM 2559 2394310 - 2394351 + T 86 -6 -5.27477 | gap 2, opp_overlap 2394316, overlap 2394311 2394316 TAATTGGTCTGTAAA AGA-A-AACCCCCGATCAGC GGCT GCTCATCGGGGGTTATATCA TTTTTTGCTTACCCT TERM 2560 2394311 - 2394350 + T 81 -9.5 -3.75402 | gap 2, opp_overlap 2394316, overlap 2394310 2394316 AATTGGTCTGTAAAA GA-A-AACCCCCGATCAGC GGCT GCTCATCGGGGGTTATATC ATTTTTTGCTTACCC TERM 2561 2394343 - 2394316 - T 100 -15.6 -5.07652 | opp_overlap 2394311 2394310 2394316 GTCTGTAAAAGAAAA CCCCCGATCAGC GGCT GCTCATCGGGGG TTATATCATTTTTTG TERM 2562 2394316 - 2394343 + T 100 -15.6 -3.74447 | opp_overlap 2394316, overlap 2394311 2394310 GTCTGTAAAAGAAAA CCCCCGATCAGC GGCT GCTCATCGGGGG TTATATCATTTTTTG YPTS_2171 2397076 - 2394401 - | iron-containing alcohol dehydrogenase TERM 2563 2395285 - 2395320 + g 78 -9.1 -4.10007 | opp_overlap 2395296, overlap 2395296 AACCGGTACCTGATG TGGTTGTAATAGCGA CCAATT TCGCTTTTACACCCA TTTTCGGGAACTTAT TERM 2564 2396598 - 2396632 + g 80 -8.7 -4.33621 | gap 2, opp_overlap 2396584 2396583, overlap 2396627 TCCGCTGGCGCACCT GCTGC-GATAGCG-GCT TGA AGCACGATATCCGCAGC TTTATTGGTTGCGTC TERM 2565 2398095 - 2398105 + H 74 -4 -5.08088 | overlap 2398089 GTTATAATGCACTGT TATC GGT GATA TTTTTATTAGCAATT YPTS_2172 2398135 - 2398779 + | multiple antibiotic resistance (MarC)-related protein TERM 2566 2398800 - 2398835 + F 80 -2.6 -5.49809 | gap 1, overlap 2398801 ACCATTCAGAATTTT CGAG-AGGCCACTGA ACTATTC TTGGTGGCCTTCTCC TTTTTTTCCGCTTTG TERM 2567 2399205 - 2399192 - f 73 -2.5 -5.24531 | ATTCTGCATAAAAAA TATTT TAGT AAATA AATTCAATATGTTAT YPTS_2173 2399617 - 2401254 + | extracellular solute-binding protein TERM 2568 2401750 - 2401768 + G 71 -3.1 -4.92757 | overlap 2401753 TGGGTTTTGCGATGA CTGGG GTCGTCATA CCCAG TTTTGTTGTTGCTCC YPTS_2174 2401341 - 2402261 + | binding-protein-dependent transport systems inner membrane component YPTS_2175 2402280 - 2403185 + | binding-protein-dependent transport systems inner membrane component TERM 2569 2403972 - 2403984 + G 71 -6.3 -4.20783 | ATCATCCAAGCCACC CCTAT TCG ATAGG TTTATTGAATGCCGT YPTS_2176 2403197 - 2404198 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2570 2405157 - 2405167 + G 73 -8.2 -3.794 | ATTAGAAGGGAGTTT CCGC CAC GCGG TTTCGTGCCTTAAAG YPTS_2177 2404195 - 2405196 + | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2571 2405667 - 2405683 + F 77 -4.5 -5.05228 | opp_overlap 2405630 2405667 2405662 ATTGACGAATTAAAA CATATTA AGT TAATGTG TTTTTGTCATTTAAT YPTS_2178 2405767 - 2405982 + | hypothetical protein TERM 2572 2406073 - 2406106 + T 100 -16.9 -3.80114 | overlap 2406074 GGGCTGCTCTTGCTC ACCTCAGTCACTTAG TTAT CTAAGTGACTGAGGA TTTACTCGATTGCTG TERM 2573 2406074 - 2406105 + T 100 -20.4 -2.87586 | overlap 2406073 GGCTGCTCTTGCTCA CCTCAGTCACTTAG TTAT CTAAGTGACTGAGG ATTTACTCGATTGCT TERM 2574 2406222 - 2406254 + T 71 -9.1 -3.31416 | opp_overlap 2406221 2406223, overlap 2406225 AAGGATAATTAAGAT ACATTGCCCCGGGGT TGA ACTATGGGGCAATGA TTAACTCTTTATTTT TERM 2575 2406225 - 2406251 + T 70 -9.4 -2.8084 | opp_overlap 2406223 2406221, overlap 2406222 GATAATTAAGATACA TTGCCCCGGGGT TGA ACTATGGGGCAA TGATTAACTCTTTAT YPTS_2179 2406633 - 2406280 - | hypothetical protein YPTS_2180 2408228 - 2406768 - | phospholipase D/transphosphatidylase YPTS_2181 2408434 - 2408297 - | hypothetical protein TERM 2576 2408446 - 2408472 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 2408435, overlap 2408441 2408447 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2577 2408447 - 2408473 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 2408435, overlap 2408441 2408446 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2578 2408868 - 2408884 + H 100 -8.7 -5.48213 | opp_overlap 2408867 2408870 ATTATGGTAATAAGG CAGTCTC TAT GAGGCTG TTTTTGTTTTGAATC YPTS_2182 2409295 - 2409834 + | virulence-related outer membrane protein YPTS_2183 2409809 - 2409937 + | hypothetical protein YPTS_2184 2410054 - 2410317 + | hypothetical protein TERM 2579 2410400 - 2410361 - T 100 -11 -6.15536 | opp_overlap 2410363 2410365 2410368 2410371, overlap 2410362 2410363 AATTAACAAAAAAAA CTTATAATAATACGCCTA GCTT TAGGCGTATTATTATATC TAGTGTCTACAACCG TERM 2580 2410399 - 2410362 - T 100 -14.5 -4.25661 | opp_overlap 2410363 2410365 2410368 2410371, overlap 2410361 2410363 ATTAACAAAAAAAAC TTATAATAATACGCCTA GCTT TAGGCGTATTATTATAT CTAGTGTCTACAACC TERM 2581 2410363 - 2410398 + T 100 -18 -2.88999 | opp_overlap 2410363 2410362 2410361, overlap 2410365 2410368 2410371 TTAACAAAAAAAACT TATAATAATACGCCTA GCTT TAGGCGTATTATTATA TCTAGTGTCTACAAC TERM 2582 2410398 - 2410363 - T 100 -18 -3.12957 | opp_overlap 2410363 2410365 2410368 2410371, overlap 2410362 2410361 TTAACAAAAAAAACT TATAATAATACGCCTA GCTT TAGGCGTATTATTATA TCTAGTGTCTACAAC TERM 2583 2410365 - 2410396 + T 100 -16.2 -2.99545 | opp_overlap 2410363 2410362 2410361, overlap 2410363 2410368 2410371 AACAAAAAAAACTTA TAATAATACGCCTA GCTT TAGGCGTATTATTA TATCTAGTGTCTACA TERM 2584 2410368 - 2410393 + T 100 -13.5 -3.63762 | opp_overlap 2410363 2410362 2410361, overlap 2410365 2410363 2410371 AAAAAAAACTTATAA TAATACGCCTA GCTT TAGGCGTATTA TTATATCTAGTGTCT TERM 2585 2410371 - 2410390 + T 90 -10.8 -3.94067 | opp_overlap 2410363 2410362 2410361, overlap 2410368 2410365 2410363 AAAAACTTATAATAA TACGCCTA GCTT TAGGCGTA TTATTATATCTAGTG YPTS_2185 2410677 - 2410348 - | hypothetical protein YPTS_2186 2411160 - 2410915 - | YCII-related YPTS_2187 2411358 - 2411480 + | hypothetical protein YPTS_2188 2411512 - 2412258 + | TonB family protein TERM 2586 2412280 - 2412297 + T 100 -14.1 -4.12603 | CTGTCACCAACCTCA GGGCCGC TTTT GCGGCCC TTCTTGTTTAATCAA YPTS_2189 2412776 - 2412327 - | thioesterase superfamily protein YPTS_2190 2413398 - 2412856 - | intracellular septation protein A YPTS_2191 2413586 - 2413687 + | hypothetical protein YPTS_2192 2413629 - 2415368 + | sulphate transporter TERM 2587 2415414 - 2415436 + T 100 -16.4 -4.68593 | TGTCTACAGTTTGAA CGCCTGATGT AAT ACATCAGGCG TTTTTGAATGATACA YPTS_2193 2416259 - 2415489 - | hypothetical protein TERM 2588 2416687 - 2416667 - H 73 -8.4 -3.57715 | AAAAGATACGAAAGA TGTGATCT CGATT AGATCACA AATACTCATTTGTAG TERM 2589 2416738 - 2416690 - H 100 -13.6 -4.03078 | gap 1, overlap 2416692 2416693 CGATTAGATCACAAA TACTCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATG-GAA TGGATAATGAAAAAA TERM 2590 2416736 - 2416692 - H 100 -16.2 -3.60505 | gap 1, overlap 2416690 2416693 ATTAGATCACAAATA CTCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATG-G AATGGATAATGAAAA TERM 2591 2416736 - 2416693 - H 100 -16.4 -2.7558 | overlap 2416692 2416690 TTAGATCACAAATAC TCATTTGTAGGTATATTCAC CCCC GTAAATATACCTACAAATGG AATGGATAATGAAAA YPTS_2194 2416745 - 2417380 + | OmpW family protein TERM 2592 2417490 - 2417522 + T 100 -10.6 -5.30155 | gap 1, opp_overlap 2417496, overlap 2417494 2417496 CATCAGTTAGGCGGG CAGTAAGGAGGCGCG GTTA TGCGCCTCCTC-CTG TTTTTTACTTAATCA TERM 2593 2417494 - 2417519 + T 79 -11.1 -3.14982 | opp_overlap 2417496, overlap 2417490 2417496 AGTTAGGCGGGCAGT AAGGAGGCGCG GTTA TGCGCCTCCTC CTGTTTTTTACTTAA TERM 2594 2417517 - 2417496 - T 95 -13 -3.14564 | opp_overlap 2417496 2417494 2417490 TTAGGCGGGCAGTAA GGAGGCGC GGTTAT GCGCCTCC TCCTGTTTTTTACTT TERM 2595 2417496 - 2417517 + T 100 -13.7 -3.11487 | opp_overlap 2417496, overlap 2417494 2417490 TTAGGCGGGCAGTAA GGAGGCGCG GTTA TGCGCCTCC TCCTGTTTTTTACTT YPTS_2195 2417841 - 2417527 - | transport-associated TERM 2596 2418095 - 2418063 - R 76 -7.8 -4.13343 | overlap 2418065 AGAAATGGCTGAAAA TAGCGCCTGTTT CATGTAAAC AAACAGGCGCTG AAGGGCGGTAATGAC TERM 2597 2418093 - 2418065 - R 82 -10.4 -3.65832 | overlap 2418063 AAATGGCTGAAAATA GCGCCTGTTT CATGTAAAC AAACAGGCGC TGAAGGGCGGTAATG TERM 2598 2418190 - 2418201 + r 72 -7.2 -3.91196 | opp_overlap 2418187 AAATAATAACTAGCT GCGG GTTG CCGC TTTCATCTCTGTGAC YPTS_2196 2418990 - 2418184 - | tryptophan synthase, alpha subunit TERM 2599 2418310 - 2418327 + g 80 -8.3 -4.4078 | opp_overlap 2418299 2418302 AATAGCACCCGCCGC GCCCGCC GCCA GGCTGGC TTTTACTTGCGCGGG YPTS_2197 2420180 - 2418990 - | tryptophan synthase, beta subunit YPTS_2198 2421742 - 2420315 - | phosphoribosylanthranilate isomerase YPTS_2199 2422744 - 2421746 - | anthranilate phosphoribosyltransferase TERM 2600 2421920 - 2421938 + g 73 -5.2 -4.63932 | opp_overlap 2421920 TTTACCTTGTAACAA CCGTGCTA AAA TGTCACGG TTTTCTTCCGGCATA YPTS_2200 2423337 - 2422759 - | glutamine amidotransferase of anthranilate synthase YPTS_2201 2424902 - 2423337 - | anthranilate synthase component I TERM 2601 2424978 - 2424964 - H 100 -11.4 -5.64274 | CTATCCATAAAAAAA CCCGCT ATT AGCGGG CTGAAGCAATCTGCA YPTS_2202 2425318 - 2426253 + | phosphotransferase domain-containing protein YPTS_2203 2426270 - 2426890 + | Sua5/YciO/YrdC/YwlC family protein TERM 2602 2427069 - 2427054 - f 83 -9 -4.16681 | AATATTAGTGTAAAA TGTCCG GCCA CGGACA AGTGTGTGTGCCAGT YPTS_2204 2427220 - 2428254 + | pseudouridine synthase TERM 2603 2428319 - 2428356 + T 75 -5.7 -4.63542 | gap 1, opp_overlap 2428319 2428320, overlap 2428323 TAGCGACGTGAATAA TGCTTATTGCCGCAGTTT TTT GGACTGCGGCAATAT-TA TTTTTAACGCTTATA TERM 2604 2428323 - 2428353 + T 100 -15.6 -4.42235 | opp_overlap 2428319 2428320, overlap 2428319 GACGTGAATAATGCT TATTGCCGCAGTTT TTT GGACTGCGGCAATA TTATTTTTAACGCTT YPTS_2205 2429021 - 2428377 - | cob(I)alamin adenosyltransferase YPTS_2206 2429745 - 2428984 - | short-chain dehydrogenase/reductase SDR TERM 2605 2429128 - 2429141 + gH 76 -8.1 -4.21439 | overlap 2429136 ATCTTCATCGGGGAA TGCGG TCGC CCGCA TTTGTGTTCGGGTTC TERM 2606 2430255 - 2430290 + G 90 -12.8 -3.67 | gap 1, overlap 2430253 2430259 AGGGAGCATTGGGGC GCAGGAGGTCTCTTCAT TAC GTGAAGAGATCTC-TGC TATTTTGGCCGTTGC TERM 2607 2430259 - 2430287 + G 86 -13.3 -2.93891 | overlap 2430255 2430253 AGCATTGGGGCGCAG GAGGTCTCTTCAT TAC GTGAAGAGATCTC TGCTATTTTGGCCGT TERM 2608 2430440 - 2430452 + G 77 -10.5 -3.54951 | opp_overlap 2430437, overlap 2430451 CGGTTGATAAAGTTG CCGCC AGT GGCGG TTATATGATGGCCTG YPTS_2207 2429917 - 2430963 + | peptidase S49 domain-containing protein TERM 2609 2431026 - 2430995 - T 73 -7.3 -4.18488 | opp_overlap 2430995 2430996, overlap 2430996 AGTGATGGCAATAAA TGCAGGGGGTA ATCTGAACGG TACCCCCTGCT ATTTGCTACCAACCC TERM 2610 2431025 - 2430996 - T 79 -10.8 -3.10611 | opp_overlap 2430996 2430995, overlap 2430995 GTGATGGCAATAAAT GCAGGGGGTA ATCTGAACGG TACCCCCTGC TATTTGCTACCAACC TERM 2611 2430996 - 2431025 + T 83 -10.8 -3.44848 | gap 1, opp_overlap 2430995 2430996, overlap 2430995 GTGATGGCAATAAAT GCAGGGGGTAATC TGAAC GGT-ACCCCCTGC TATTTGCTACCAACC YPTS_2208 2431333 - 2431082 - | hypothetical protein YPTS_2209 2431426 - 2431725 + | hypothetical protein TERM 2612 2431729 - 2431715 - f 80 -5 -5.13344 | overlap 2431716 ACAGCAAGATAAAAA CCTTCT TTT AGAAGA AATAATTTAGGTAAA TERM 2613 2431977 - 2431961 - g 77 -6.5 -4.55446 | GAAGAAAGACGAAAA GGTTGCC TTA GTCAACC GTATGGGGGTCGATC TERM 2614 2432691 - 2432680 - g 83 -4.4 -5.40072 | TTGGTGTGAAAAAAA CCAT GATG ATGG CACAGCGCCTGTATG YPTS_2210 2431752 - 2434367 + | DNA topoisomerase I TERM 2615 2434428 - 2434444 + F 100 -9.4 -5.46657 | opp_overlap 2434427 2434428 CTGACCTCGGTAAAG CCAGCC TTCGC GGCTGG TTTTTTATTGGGCTA YPTS_2211 2434764 - 2435738 + | LysR family transcriptional regulator YPTS_2212 2436074 - 2436931 + | hypothetical protein TERM 2616 2437367 - 2437385 + G 79 -11.7 -3.11768 | opp_overlap 2437365 TATGACTACTACAGC CTGCCGC AATTG GCGGCAG TGTTGGGTGATATCA YPTS_2213 2437295 - 2439967 + | aconitate hydratase 1 TERM 2617 2440073 - 2440099 + T 91 -10.2 -4.16033 | opp_overlap 2440073 TTATCAGCCTCTAAA GGGTAGGTATAA TTA TTGAACCTACCC TTATTCTTATTTCGC YPTS_2214 2440733 - 2440131 - | GTP cyclohydrolase II TERM 2618 2440244 - 2440260 + g 71 -4.3 -4.70626 | overlap 2440256 2440259 TATTGATCCCCGCTT GGGTGAG GAT CTCGACC TTTTTAGGGTTGTTG YPTS_2215 2441227 - 2441988 + | phosphoesterase PA-phosphatase related YPTS_2216 2442169 - 2442480 + | hypothetical protein TERM 2619 2443112 - 2443102 - g 73 -2.4 -5.08824 | overlap 2443103 GGGTTACTGAAAAAA GCGG CAA CGGC GGATAAACAATGTGC YPTS_2217 2442487 - 2443656 + | TPR repeat-containing protein TERM 2620 2443744 - 2443723 - T 77 -6.5 -4.63218 | opp_overlap 2443723 2443724, overlap 2443724 TCTTTGCTAATAAAA TCGGGTGAA CGGG TCCACCCGG TTGTTAGCTGTTGTG TERM 2621 2443743 - 2443724 - T 76 -10 -3.3761 | opp_overlap 2443724 2443723, overlap 2443723 CTTTGCTAATAAAAT CGGGTGAA CGGG TCCACCCG GTTGTTAGCTGTTGT YPTS_2218 2444077 - 2443778 - | hypothetical protein YPTS_2219 2444547 - 2445284 + | orotidine 5'-phosphate decarboxylase YPTS_2220 2445284 - 2445610 + | translation initiation factor SUI1 TERM 2622 2445678 - 2445641 - T 95 -13.8 -2.87132 | gap 1, opp_overlap 2445641 2445646, overlap 2445646 TTTTCCGCGCAGATA TAAAATACGGCGT-TGA TATTG TCAAACGCCGTATTTTA TTTAGAACTTCTAAT TERM 2623 2445641 - 2445678 + T 100 -14.5 -3.62859 | gap 1, opp_overlap 2445641 2445646, overlap 2445646 TTTTCCGCGCAGATA TAAAATACGGCGT-TGAT ATT GTCAAACGCCGTATTTTA TTTAGAACTTCTAAT TERM 2624 2445673 - 2445646 - T 100 -9.3 -4.60797 | gap 1, opp_overlap 2445646 2445641, overlap 2445641 CGCGCAGATATAAAA TACGGCGT-TGA TATTG TCAAACGCCGTA TTTTATTTAGAACTT TERM 2625 2445646 - 2445673 + T 100 -10 -4.88405 | gap 1, opp_overlap 2445641 2445646, overlap 2445641 CGCGCAGATATAAAA TACGGCGT-TGAT ATT GTCAAACGCCGTA TTTTATTTAGAACTT YPTS_2221 2446081 - 2445866 - | osmotically inducible lipoprotein B precursor YPTS_2222 2446561 - 2447256 + | L-ribulose-5-phosphate 4-epimerase TERM 2626 2447278 - 2447299 + T 70 -5.1 -4.56597 | AACATAAATAATGAG CCCGTGT TCAGTCTT GCACGGG TTTTTCCAGCCAGAG YPTS_2223 2447533 - 2447285 - | hypothetical protein YPTS_2224 2447867 - 2448532 + | transaldolase TERM 2627 2448618 - 2448588 - T 100 -13.5 -4.18506 | overlap 2448574 2448591 TGAGCGGTAAAAGAA TAACGCCCTATAA AATCA CTATAGGGCGTTA CGGTGTCACTAATTT TERM 2628 2448615 - 2448591 - T 93 -10.8 -4.20868 | overlap 2448574 2448588 GCGGTAAAAGAATAA CGCCCTATAA AATCA CTATAGGGCG TTACGGTGTCACTAA YPTS_2225 2448954 - 2448649 - | hypothetical protein YPTS_2226 2451013 - 2448947 - | carbon starvation protein CstA TERM 2629 2449203 - 2449213 + g 75 -5.4 -4.74132 | opp_overlap 2449203 GCTTGAGCAAGGAAG CCAA TAC TTGG TTTTTCATGGAATAT TERM 2630 2451309 - 2451344 + r 71 -9.6 -3.03124 | opp_overlap 2451314, overlap 2451314 GCAAACATAACATTA AAAAAGCCGTCGGGGG AATT CCTCCGACGGCTATCA TGTTAAAACATAAGA TERM 2631 2451339 - 2451314 - R 100 -16.1 -5.30189 | opp_overlap 2451314 2451309 CATAACATTAAAAAA GCCGTCGGGGG AATT CCTCCGACGGC TATCATGTTAAAACA TERM 2632 2451314 - 2451339 + r 100 -18.3 -2.9155 | opp_overlap 2451314, overlap 2451309 CATAACATTAAAAAA GCCGTCGGGGG AATT CCTCCGACGGC TATCATGTTAAAACA YPTS_2227 2453297 - 2451363 - | exoribonuclease II TERM 2633 2452872 - 2452883 + g 73 -7.2 -4.2828 | opp_overlap 2452872 TAGGTCAGCCTGAAA GGCG CGGT CGCC TTTTAATGGGTGGCG TERM 2634 2453065 - 2453055 - G 73 -3.2 -4.86033 | AAAGCGGGATAAAAA TGGC TCA ACCA ATGTTTCAGGTTCAG TERM 2635 2454031 - 2454002 - g 83 -6.5 -4.95547 | gap 1, opp_overlap 2454005 2454019, overlap 2454005 GTTACAAGAAGAAAA TAATGCC-TACCGT AAA ACGGTATGGCATCT CTTGCCGCTACTGAT TERM 2636 2454028 - 2454005 - g 100 -10.4 -4.55653 | gap 1, opp_overlap 2454005 2454019, overlap 2454002 ACAAGAAGAAAATAA TGCC-TACCGT AAA ACGGTATGGCA TCTCTTGCCGCTACT TERM 2637 2454005 - 2454028 + G 72 -10.4 -3.08073 | gap 1, opp_overlap 2454005 2454002, overlap 2454019 ACAAGAAGAAAATAA TGCC-TACCGT AAA ACGGTATGGCA TCTCTTGCCGCTACT YPTS_2228 2453946 - 2455256 + | major facilitator transporter TERM 2638 2455802 - 2455784 - g 73 -4.6 -4.66609 | opp_overlap 2455784 2455788 TATGGTACGCAAAAA GCATTAAA CGA TTTATTGC TGTCTGATTACAGCC YPTS_2229 2455322 - 2456320 + | NAD-dependent epimerase/dehydratase YPTS_2230 2457144 - 2456503 - | endonuclease III YPTS_2231 2457842 - 2457141 - | electron transport complex, RnfABCDGE type, E subunit YPTS_2232 2458468 - 2457839 - | electron transport complex, RnfABCDGE type, G subunit YPTS_2233 2459572 - 2458478 - | electron transport complex, RnfABCDGE type, D subunit TERM 2639 2460371 - 2460349 - g 93 -8.4 -5.03314 | overlap 2460351 CGTACCTTTAAAAAA CGGTTTGGCG TGA CACCAAACAG CTTCCGCCAGATGAA YPTS_2234 2460061 - 2460954 + | AraC family transcriptional regulator YPTS_2235 2463038 - 2461059 - | electron transport complex, RnfABCDGE type, C subunit TERM 2640 2462039 - 2462069 + g 76 -9.8 -3.6682 | opp_overlap 2462034 CCCCCATAATCACCA TTGGCGGGTTTTGA GGC TTGAAACCGGCCAA TTTAAGTAAATACAG TERM 2641 2462663 - 2462675 + g 71 -9.1 -3.61398 | CGCGCTGGCGATAGT CAGCC CAC GGCTG TTGTTCACGCCAGCG YPTS_2236 2463654 - 2463031 - | electron transport complex, RnfABCDGE type, B subunit TERM 2642 2463416 - 2463435 + g 90 -9.2 -4.54301 | AGTTTCAGCATCACC TGCTCGCC ACCC GGCGCGCA TTTGTTGATTTTTTC YPTS_2237 2464235 - 2463654 - | electron transport complex, RnfABCDGE type, A subunit TERM 2643 2464288 - 2464263 - R 87 -5.4 -5.55855 | CCTAAAAAAATAAAA GCCGCCTATT ATCCAA AATTGACGGC CCGACGACAACAGAT YPTS_2238 2464806 - 2464363 - | membrane protein TERM 2644 2464433 - 2464422 - G 80 -4.4 -5.1963 | overlap 2464424 TGTAAGGAACAAAAA TAGC TGCA GCTA GCAGCGGCCACCCGA TERM 2645 2464438 - 2464424 - G 73 -7.1 -4.21997 | overlap 2464422 TAAGGAACAAAAATA GCTGC AGCTA GCAGC GGCCACCCGAGTGTT TERM 2646 2466061 - 2466045 - g 72 -10.9 -2.59793 | overlap 2466044 2466042 TGAGTTAGATAATAT CCGTGAT TTC ATCACGG GTTCGGCCCTGACAT YPTS_2239 2465281 - 2467428 + | type I secretion system ATPase YPTS_2240 2467473 - 2468843 + | HlyD family type I secretion membrane fusion protein YPTS_2241 2468845 - 2470983 + | type I secretion system ATPase TERM 2647 2471143 - 2471159 + T 70 -5.1 -4.49311 | opp_overlap 2471105 2471101, overlap 2471107 2471144 CAGGCCTCTGAGGGT GTCGCTA TCA TAGCGAA TTTTATAATACTGAT YPTS_2242 2472709 - 2471207 - | L-arabinose isomerase YPTS_2243 2474496 - 2472793 - | L-ribulokinase YPTS_2244 2474903 - 2475886 + | periplasmic binding protein/LacI transcriptional regulator YPTS_2245 2475984 - 2477555 + | ABC transporter related YPTS_2246 2477573 - 2478622 + | inner-membrane translocator YPTS_2247 2478843 - 2479775 + | AraC family transcriptional regulator TERM 2648 2480942 - 2480926 - g 79 -2.2 -5.49569 | GATCAACAGAAAAAA GCACTG CCGAT CATTGC TAAAAATTGATGTTT YPTS_2248 2479903 - 2480952 + | oxidoreductase domain-containing protein TERM 2649 2480997 - 2481024 + F 100 -7.8 -6.32976 | gap 1, opp_overlap 2480995 2481010 AGGGTGGAAATATCT CTCTGGG-CAC AATCTCC GTGGCCCAGAG TTTTTTTATTTTTTT TERM 2650 2481757 - 2481737 - g 89 -6.1 -5.27923 | opp_overlap 2481737, overlap 2481739 GAACGGCACAAAAAA CTGGTCAAT ATC ACTGACCGG TCATCTATTTTGTTG YPTS_2249 2481146 - 2482174 + | putative sodium/bile acid symporter family protein TERM 2651 2482311 - 2482283 - T 73 -5.9 -4.48449 | opp_overlap 2482283 TGATGAAAATAGAAA GCGCCGGTACC ACTCTAG GGTATGGGCGC TTTTTTATTTTATCG TERM 2652 2482283 - 2482311 + T 100 -8.1 -5.86976 | opp_overlap 2482283 TGATGAAAATAGAAA GCGCCGGTACC ACTCTAG GGTATGGGCGC TTTTTTATTTTATCG YPTS_2250 2483353 - 2482349 - | adenosine deaminase TERM 2653 2482375 - 2482385 + g 83 -6.8 -4.91084 | GGAATACTTTATCCC GCAG TGC CTGC TTTTCTTGTTCGCTG YPTS_2251 2483742 - 2484998 + | hypothetical protein YPTS_2252 2486100 - 2485171 - | hypothetical protein YPTS_2253 2486219 - 2486124 - | PTS system, N-acetylglucosamine-specific IIBC component YPTS_2254 2486474 - 2487223 + | GntR family transcriptional regulator TERM 2654 2487445 - 2487462 + T 100 -12.7 -4.82901 | opp_overlap 2487445 GGTTCGCATTAAAAA CGGAGCC AATG GGCTCCG TTTTTATCGAACAAA TERM 2655 2487462 - 2487445 - T 100 -12.7 -4.72272 | opp_overlap 2487445 GGTTCGCATTAAAAA CGGAGCC AATG GGCTCCG TTTTTATCGAACAAA YPTS_2255 2489035 - 2487491 - | hypothetical protein TERM 2656 2487849 - 2487859 + g 78 -5.4 -5.00616 | ATTGGAATGCTCAGG TTGG CGT CCAA TTTTTTCACCGCGGG TERM 2657 2487868 - 2487886 + g 74 -3 -5.16206 | CGTCCAATTTTTTCA CCGCGGGT GCT ATCAGTGG TTTTTCTGTTGATTT TERM 2658 2487934 - 2487952 + g 71 -7.4 -4.13748 | TCAGTTCGATATTCA GGGTAAAG GTA CTTTCCCC TTTAGTATTTTTCCA TERM 2659 2488774 - 2488760 - G 71 -6.4 -4.19336 | AATGACTTCAATAAA GGCGAT TTC ATCACC ATCGCTCAATACTTT TERM 2660 2489148 - 2489135 - R 71 -3.1 -5.07107 | GAAATCCCCAAAAAA GAAGA TATA TCTCC CAAATAATATAGGCC YPTS_2256 2490354 - 2489275 - | mannose-6-phosphate isomerase, class I TERM 2661 2490093 - 2490112 + g 71 -2.8 -4.86731 | gap 1, overlap 2490096 TGCGCTCAGCCGCAT CCA-GTGGG ATA CCTGCCTGG TTTTCTTTAGCAAAA YPTS_2257 2490734 - 2492131 + | fumarate hydratase, class II TERM 2662 2492154 - 2492174 + T 79 -6.8 -4.62783 | opp_overlap 2492154 ACATTGTTATATTAA CGCCGG GGTGGATTA CCGGCG TTTTTACAGTGGCTA YPTS_2258 2493185 - 2492211 - | DNA replication terminus site-binding protein TERM 2663 2492556 - 2492569 + g 79 -3.7 -5.29782 | TGGAGGAACAGCTCG GCCAG CATT CAGGC TTTTTTCTAGCTGTA YPTS_2259 2494649 - 2493351 - | major facilitator transporter YPTS_2260 2494862 - 2495776 + | LysR family transcriptional regulator TERM 2664 2495815 - 2495802 - f 87 -5.3 -5.47846 | overlap 2495809 AAGGAAAAAAGAAAA CACAT GATT ATGTG CAGCAAATCACATAA YPTS_2261 2495955 - 2497172 + | ROK family protein TERM 2665 2497207 - 2497183 - f 75 -10.3 -2.84602 | opp_overlap 2497187 2497190, overlap 2497182 2497190 GCTAGTGTATTAAAT CTAATAATTAA GAG TTAATTATTAG TGGGTACCTTCGGTC YPTS_2262 2497396 - 2498064 + | dethiobiotin synthase YPTS_2263 2499449 - 2498169 - | chloride channel core TERM 2666 2498306 - 2498290 - G 70 -7.9 -3.91197 | overlap 2498282 TCACAAACCATTAAA GCGGCCA TAA TGGGCGC ATGGGTCGTTGCTGC TERM 2667 2498718 - 2498704 - G 77 -4.9 -4.85782 | GCTTTTAAAAATAAA GGGCC GCTGA AGCCC GCCATTAATCCTAGA TERM 2668 2499574 - 2499554 - R 100 -9.7 -4.66537 | TTGTTCAATATAAAA GGCGTACCA CGA TGCTACGCC TTAGCAGGGAGGGAA YPTS_2264 2499840 - 2499595 - | hypothetical protein TERM 2669 2499723 - 2499713 - G 77 -8.2 -4.13945 | ATTTCCAGCTTAAAA CCGG ATT CCGG CACGCCATTGCTAAT YPTS_2265 2500428 - 2500054 - | hypothetical protein YPTS_2266 2501386 - 2500637 - | short-chain dehydrogenase/reductase SDR YPTS_2267 2502513 - 2501500 - | sigma-54 dependent trancsriptional regulator YPTS_2268 2503101 - 2502727 - | hypothetical protein YPTS_2269 2504059 - 2503310 - | short-chain dehydrogenase/reductase SDR YPTS_2270 2505924 - 2504173 - | Fis family GAF modulated sigma54 specific transcriptional regulator TERM 2670 2505955 - 2505977 + H 82 -7.9 -4.43012 | TTCGCTACACATGTA TCATTATTG TGTCT CAATAATGA TTTTAATGTTGCGAT YPTS_2271 2506220 - 2507740 + | aldehyde dehydrogenase TERM 2671 2507861 - 2507840 - T 75 -8.7 -3.58037 | opp_overlap 2507840 GAGTAACGTTTCAAA GACCGGTTA TTAG TGACCGGTC TTTTAAGGGGTCTGA TERM 2672 2507840 - 2507861 + T 93 -10.9 -4.10657 | opp_overlap 2507840 GAGTAACGTTTCAAA GACCGGTTA TTAG TGACCGGTC TTTTAAGGGGTCTGA YPTS_2272 2509553 - 2508021 - | hypothetical protein TERM 2673 2508643 - 2508666 + g 73 -5.2 -4.56914 | overlap 2508631 2508645 2508649 TCGGCGATCGGCGCA CCTGAACGCG CTAT CGCGTTAATG TTTTGGTTTCGGTCG TERM 2674 2510654 - 2510644 - g 80 -6.8 -4.72029 | opp_overlap 2510639 CGCAATGCAAGAAAA GGTG CTG CACC GTCTCTGTTATCACA YPTS_2273 2510127 - 2511050 + | hypothetical protein YPTS_2274 2511113 - 2511271 + | hypothetical protein YPTS_2275 2511690 - 2511598 - | hypothetical protein YPTS_2276 2513034 - 2511856 - | aminotransferase class I and II YPTS_2277 2514475 - 2513021 - | Na+/H+ antiporter NhaC YPTS_2278 2514547 - 2514663 + | hypothetical protein YPTS_2279 2515636 - 2514620 - | LacI family transcription regulator YPTS_2280 2516170 - 2515700 - | hypothetical protein YPTS_2281 2517264 - 2516314 - | periplasmic binding protein/LacI transcriptional regulator YPTS_2282 2518504 - 2517443 - | inner-membrane translocator TERM 2675 2517959 - 2517976 + g 78 -7.7 -4.35604 | gap 1 ACCGGTATTACCTAG CTCG-GGG CTA CCCGCGAG TTTGTTGTAGGTTAA TERM 2676 2518215 - 2518200 - G 73 -2.4 -5.14563 | CCTTGCATTAAAAAA CCCGCG AATA CGCCAG ACAGACCCAATGTCG YPTS_2283 2520069 - 2518531 - | ABC transporter related YPTS_2284 2520719 - 2520066 - | hypothetical protein YPTS_2285 2520887 - 2520738 - | hypothetical protein TERM 2677 2521158 - 2521174 + H 79 -8.1 -4.33105 | opp_overlap 2521148 AGGAAGTGTGATTTT CATACAT AAT ATGTATG TTTTGATGCTAATTA TERM 2678 2521743 - 2521718 - g 72 -10.5 -3.01708 | gap 1, opp_overlap 2521717 2521718 CAAAGGGGATAGATA TTGCTCCCGCAA TCG TCGCGGG-GCAA ATTGATATAGCGGCC TERM 2679 2522209 - 2522188 - g 73 -8.7 -3.93583 | GAAGCCATGTATAAA GAGAAGCCA GAGG TGGCTGCTC GCGTACTTAAACTGT YPTS_2286 2521474 - 2522505 + | ABC transporter, periplasmic substrate-binding protein TERM 2680 2522914 - 2522934 + G 88 -2.3 -5.86965 | overlap 2522915 GCGATGCTGTGGTTC GGCCTGGGG AAT CCGCCGGCA TTTTTTTTGATAAGT YPTS_2287 2522509 - 2523330 + | binding-protein-dependent transport systems inner membrane component TERM 2681 2523465 - 2523477 + G 71 -6.3 -4.29493 | GATAAATCTTCATAT TTCAC ATG GTGAA TTTGTCTGTTTACTG YPTS_2288 2523340 - 2524158 + | ABC transporter related TERM 2682 2524531 - 2524564 + T 100 -10.3 -4.74453 | gap 1, opp_overlap 2524532 2524534, overlap 2524534 AGCTCTCTCAATTCA ATACGCAGGCGG-TGA TCA TCATCCGCCTGCGTTG TTTTTCAATCTATTC TERM 2683 2524563 - 2524532 - T 100 -13.8 -3.17075 | gap 1, opp_overlap 2524531 2524534, overlap 2524534 GCTCTCTCAATTCAA TACGCAGGCGG-TGA TCA TCATCCGCCTGCGTT GTTTTTCAATCTATT TERM 2684 2524561 - 2524534 - T 100 -16.4 -3.14878 | gap 1, opp_overlap 2524531 2524534, overlap 2524532 TCTCTCAATTCAATA CGCAGGCGG-TGA TCA TCATCCGCCTGCG TTGTTTTTCAATCTA TERM 2685 2524534 - 2524561 + T 100 -16.4 -4.46215 | gap 1, opp_overlap 2524534 2524532, overlap 2524531 TCTCTCAATTCAATA CGCAGGCGG-TGA TCA TCATCCGCCTGCG TTGTTTTTCAATCTA YPTS_2289 2526073 - 2524583 - | AMP nucleosidase TERM 2686 2525240 - 2525266 + g 71 -3 -5.00616 | overlap 2525242 CTGCCCATTTTTGGC TATCAGGTGATA GGC TGGCATCTGATG TTTTTTCCACGCCAG TERM 2687 2525589 - 2525607 + g 91 -11.8 -4.09243 | ATCGTTTCAATTCCG TCGGTGAT GCC ATCACCGA TTTTAGCCAGATCTG TERM 2688 2526617 - 2526597 - g 71 -3.9 -4.77925 | overlap 2526598 AAAAAATCGGAAAAA GCCGCACAA CAG TTGTTCGGG GCATTACTCGCGAAA TERM 2689 2526858 - 2526844 - g 73 -5.6 -4.62904 | opp_overlap 2526851 AAATACGGGCAAAAA CGGTTG TCA CACCCG CAGCGGTTGAGTTAT YPTS_2290 2526279 - 2527727 + | hypothetical protein TERM 2690 2527790 - 2527802 + G 81 -7.7 -4.54727 | overlap 2527777 TTCAGGATAGTGGGA TCCAG TTC CTGGA TTTTGCTTTAACGCC TERM 2691 2527922 - 2527942 + G 78 -11.1 -3.30243 | AATATTCACTGATGC TCCCAGGGG CAG CCCCTGAGA TTGTGAAACCTGAAT YPTS_2291 2527732 - 2530803 + | virulence protein SrfB TERM 2692 2531303 - 2531329 + G 76 -9.4 -3.82604 | CGCCCGTGCTTTCTT GCTGGATTGCCC TCA GGAAAATCCAGC TTATTCGTTGGATGA TERM 2693 2531483 - 2531466 - g 71 -8.4 -3.62616 | CACCACGACACACAA CGCCAG AAAGAA CTGGCG ACTCACTTCTGGCCT YPTS_2292 2530800 - 2533340 + | hypothetical protein TERM 2694 2533412 - 2533386 - T 91 -7.9 -4.84017 | opp_overlap 2533386 AACGTGCCACAAAAA TGCGCAACTCC CCGAC GGAGAAGCGCA TTTTTTAAACGGCAG TERM 2695 2533386 - 2533412 + T 95 -7.9 -5.00616 | opp_overlap 2533386 AACGTGCCACAAAAA TGCGCAACTCC CCGAC GGAGAAGCGCA TTTTTTAAACGGCAG YPTS_2293 2534303 - 2533509 - | hypothetical protein TERM 2696 2534561 - 2534535 - H 72 -7.2 -3.9749 | gap 1, overlap 2534536 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCCCCAGGGAAG TERM 2697 2534647 - 2534635 - H 70 -7.7 -3.62046 | opp_overlap 2534635 GCACTTTGTCAATAA CCTCA ACG TGAGG TTTTGTTATCACCTA TERM 2698 2534635 - 2534647 + H 91 -7.7 -4.78237 | opp_overlap 2534635 GCACTTTGTCAATAA CCTCA ACG TGAGG TTTTGTTATCACCTA TERM 2699 2535072 - 2535096 + H 100 -15 -4.96501 | gap 1, opp_overlap 2535072 AGAAAGATTCCCAAA CCCCGC-CGGC GCCA GCCGAGCGGGG TTTCTTTTTATCGCC TERM 2700 2535096 - 2535072 - H 100 -15 -3.6292 | gap 1, opp_overlap 2535072 AGAAAGATTCCCAAA CCCCGC-CGGC GCCA GCCGAGCGGGG TTTCTTTTTATCGCC TERM 2701 2536022 - 2536006 - g 79 -10.9 -3.59979 | TCGGGCCATCGGAAA GGCAGAA CAA TTCTGCC CTCATGCCAATATTA YPTS_2294 2535152 - 2536819 + | acetolactate synthase, large subunit, biosynthetic type YPTS_2295 2536821 - 2537168 + | amino acid-binding ACT domain-containing protein TERM 2702 2537176 - 2537218 + T 100 -15 -3.65046 | opp_overlap 2537165 2537164 2537186, overlap 2537177 AAAGGTGACGTTGTC ACACGTTAAACCCTGTCG TTACTGC CGACAGGGTTTAACGGGC TTATTCGAGTAGGGA TERM 2703 2537177 - 2537217 + T 100 -18.5 -2.78813 | opp_overlap 2537164 2537186, overlap 2537176 AAGGTGACGTTGTCA CACGTTAAACCCTGTCG TTACTGC CGACAGGGTTTAACGGG CTTATTCGAGTAGGG TERM 2704 2537208 - 2537186 - T 82 -10.6 -3.63627 | opp_overlap 2537177 2537176 TTGTCACACGTTAAA CCCTGTCG TTACTGC CGACAGGG TTTAACGGGCTTATT YPTS_2296 2537909 - 2537235 - | HAD family hydrolase YPTS_2297 2540388 - 2538055 - | hypothetical protein TERM 2705 2540570 - 2540554 - R 71 -8.7 -3.39908 | TTTTTTTAAAACAGA CTGCCGT AAC ACAGCAG AAGAACCCATTAATT TERM 2706 2540607 - 2540576 - R 78 -8.8 -3.88777 | opp_overlap 2540576 AACACAGCAGAAGAA CCCATTAATTTCAC TTAA GTGCAGTTAATGGG TTAAATAATAAGTCA TERM 2707 2540576 - 2540607 + r 79 -11 -3.10164 | opp_overlap 2540576 AACACAGCAGAAGAA CCCATTAATTTCAC TTAA GTGCAGTTAATGGG TTAAATAATAAGTCA TERM 2708 2540785 - 2540795 + r 78 -5.4 -4.96848 | opp_overlap 2540778 TGAAATGATGCAGTC TGCA GGA TGCA TTTTTCTATACCCAA TERM 2709 2540973 - 2540951 - R 100 -9.9 -4.96646 | gap 1 GGACATAAGCAAAAA TCCCGGC-CA TTAC TGCGCCGGGA CGTTCCAGTGAGATA YPTS_2298 2542443 - 2540998 - | alkaline phosphatase YPTS_2299 2542701 - 2543219 + | methylated-DNA--protein-cysteine methyltransferase YPTS_2300 2543292 - 2544044 + | Crp/FNR family transcriptional regulator YPTS_2301 2544179 - 2545135 + | UspA domain-containing protein TERM 2710 2545196 - 2545173 - T 100 -13.2 -4.28049 | CGTAAAATCCTAAAA TAAGGGCCAC CGAA GTGGCCCTCA GACTGCTGACAAACC TERM 2711 2545282 - 2545256 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2545265, overlap 2545257 2545272 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2712 2545283 - 2545257 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2545265, overlap 2545256 2545272 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2713 2545383 - 2545356 - T 100 -15.6 -3.62046 | overlap 2545357 GCACTTTGTCAATAA CCTCAGGGCCAC CGAA GTGGCCCTGAGC AATACAATGGATGTT TERM 2714 2545382 - 2545357 - T 100 -19.1 -2.77013 | overlap 2545356 CACTTTGTCAATAAC CTCAGGGCCAC CGAA GTGGCCCTGAG CAATACAATGGATGT YPTS_2302 2546805 - 2545411 - | NAD(P) transhydrogenase beta subunit YPTS_2303 2548404 - 2546878 - | NAD(P) transhydrogenase, alpha subunit TERM 2715 2547351 - 2547376 + g 79 -3.2 -5.19879 | CGCGAATCACGGTAT CGTCGAAATC AATATC GATCTCGCCG TTTTTCTCTTTGCAA YPTS_2304 2548934 - 2549887 + | hypothetical protein TERM 2716 2549894 - 2549918 + F 82 -7.8 -4.4727 | overlap 2549897 TTCAAATAATTATCT TAAGGGCGGC CAAGT GCTGCCCTTC TTTTATCCGTGTTGC TERM 2717 2549897 - 2549915 + F 88 -9.5 -4.33785 | overlap 2549894 AAATAATTATCTTAA GGGCGGC CAAGT GCTGCCC TTCTTTTATCCGTGT TERM 2718 2550695 - 2550713 + G 79 -10.4 -3.68619 | GCATCGCATTTAGCC TCGATACT TTT AGTATCGA TTTCACTGGCTTAGC YPTS_2305 2550157 - 2551548 + | arginine/ornithine antiporter YPTS_2306 2551988 - 2551572 - | hypothetical protein TERM 2719 2551797 - 2551819 + g 88 -12 -3.646 | opp_overlap 2551784, overlap 2551798 TACTTGCAGCGCCAA TGCCGTAAGC TGA GCTTGCGGCG TTCTCTCTAATTCAG TERM 2720 2551798 - 2551818 + g 85 -13.3 -2.78278 | opp_overlap 2551784, overlap 2551797 ACTTGCAGCGCCAAT GCCGTAAGC TGA GCTTGCGGC GTTCTCTCTAATTCA YPTS_2307 2552285 - 2553031 + | two component transcriptional regulator YPTS_2308 2553031 - 2554335 + | integral membrane sensor signal transduction histidine kinase YPTS_2309 2554413 - 2555912 + | peptidase M32 carboxypeptidase Taq metallopeptidase TERM 2721 2557253 - 2557241 - g 80 -4.7 -5.03314 | CTGACGCGGAAAAAA GCCTG AAC CTGGC CGGCGCGTGCGTCAG TERM 2722 2558667 - 2558642 - g 72 -6.1 -4.47328 | AAGCGGATTACAAAA CCGTCCGCTAC TCTG GTAAGGAACGG GATGCGACGGGGTTG TERM 2723 2558782 - 2558799 + G 71 -6.3 -4.27441 | CTGTTCAGGATGGCG CGCAATA ATCC TGTTGCG TTTATTGATCGTAAT YPTS_2310 2556751 - 2559735 + | YD repeat-containing protein TERM 2724 2559718 - 2559728 + T 75 -5.4 -4.78752 | ACTCCAGAGCATAGT CCAA TTT TTGG TTTTTAAGTTGTAGT TERM 2725 2559794 - 2559763 - T 86 -10.4 -3.79043 | opp_overlap 2559767, overlap 2559782 CATTACTAACCGAAA GATAGTTATATTCA GAAA TGGATATAACTATC CTAAAAAATTCACAC TERM 2726 2560269 - 2560256 - T 74 -8.1 -3.95435 | GGGGTTAAAATATAA GTGGC GTAA GCCAC CGGAGCGCCCCGAGG TERM 2727 2560359 - 2560332 - T 78 -9.2 -3.61715 | opp_overlap 2560339, overlap 2560319 2560333 2560339 TAGCTTTTTCAATAA CCTCAAAGGAGC CAAA GCTCCTTTCAGA CTGCTGACAAACCCC TERM 2728 2560358 - 2560333 - T 75 -10.5 -2.76815 | opp_overlap 2560339, overlap 2560332 2560319 2560339 AGCTTTTTCAATAAC CTCAAAGGAGC CAAA GCTCCTTTCAG ACTGCTGACAAACCC TERM 2729 2560352 - 2560339 - T 70 -8.1 -3.72051 | opp_overlap 2560339, overlap 2560333 2560332 2560319 TTCAATAACCTCAAA GGAGC CAAA GCTCC TTTCAGACTGCTGAC TERM 2730 2560339 - 2560352 + T 70 -8.1 -3.58343 | opp_overlap 2560339 2560333 2560332 2560319 TTCAATAACCTCAAA GGAGC CAAA GCTCC TTTCAGACTGCTGAC TERM 2731 2560443 - 2560417 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2560426, overlap 2560418 2560433 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2732 2560444 - 2560418 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2560426, overlap 2560417 2560433 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2733 2560524 - 2560537 + T 91 -8.1 -4.85599 | opp_overlap 2560524 2560534 GTCAATAACCTCAAA GGAGC CAAA GCTCC TTTTTATAAGGTGAC TERM 2734 2560537 - 2560524 - T 70 -8.1 -3.72051 | opp_overlap 2560524, overlap 2560534 GTCAATAACCTCAAA GGAGC CAAA GCTCC TTTTTATAAGGTGAC YPTS_2311 2561140 - 2560562 - | YceI family protein YPTS_2312 2561720 - 2561166 - | cytochrome B561 TERM 2735 2562293 - 2562278 - H 71 -8.2 -3.41051 | opp_overlap 2562277 CTACTCTGATTATAA CGACCC AACG GGGCCG GTATATGAATAGAAC YPTS_2313 2562324 - 2562662 + | acid shock protein TERM 2736 2562747 - 2562730 - f 93 -12.7 -3.09208 | opp_overlap 2562730, overlap 2562732 AAATGATTCACTCAA CACCCGG TTCT CCGGGTG TTTTTTATCAGGAGT TERM 2737 2562730 - 2562747 + F 100 -12.7 -5.24531 | opp_overlap 2562730 2562732 AAATGATTCACTCAA CACCCGG TTCT CCGGGTG TTTTTTATCAGGAGT TERM 2738 2562745 - 2562732 - f 72 -9.5 -3.10056 | opp_overlap 2562730, overlap 2562730 ATGATTCACTCAACA CCCGG TTCT CCGGG TGTTTTTTATCAGGA YPTS_2314 2562996 - 2563838 + | peptidase S1 and S6 chymotrypsin/Hap YPTS_2315 2564217 - 2563894 - | XRE family transcriptional regulator YPTS_2316 2564543 - 2564214 - | hypothetical protein TERM 2739 2564872 - 2564832 - R 100 -8.4 -5.48514 | gap 1, overlap 2564835 ACTAAGAAATAAAAA GAATTCGACGCCTAAGTCT AGAT AG-CTCAGGCGTCGAATAG GGGCATCAATCAGAC TERM 2740 2564869 - 2564835 - R 100 -14.5 -4.78345 | gap 1, overlap 2564832 AAGAAATAAAAAGAA TTCGACGCCTAAGTCT AGAT AG-CTCAGGCGTCGAA TAGGGGCATCAATCA YPTS_2317 2568769 - 2564882 - | ATP-dependent helicase HrpA TERM 2741 2566425 - 2566438 + g 75 -8.1 -4.19624 | opp_overlap 2566423 2566425 TCATCGACCAGAATA TCCCG CCGA CGGGA TTTGTGTTCCAACTC TERM 2742 2566503 - 2566493 - G 71 -8.2 -3.63694 | ATTCATTCGGAAGAA CGCG TGC CGCG TCTGCCAGTCACCTT TERM 2743 2569130 - 2569111 - H 72 -6.4 -4.3351 | overlap 2569113 ATAAAATCGAACAAA GAGCGCAA AATA TTGCGCTA TCACTGGTAGCAAAA TERM 2744 2569128 - 2569113 - H 78 -9 -3.75005 | overlap 2569111 AAAATCGAACAAAGA GCGCAA AATA TTGCGC TATCACTGGTAGCAA YPTS_2318 2569214 - 2569819 + | NAD(P)H dehydrogenase (quinone) TERM 2745 2569918 - 2569935 + T 100 -14.1 -5.35222 | AGCCATGTGATGATT GCGCGCC AACC GGCGCGC TTTTTTATGCCTTTT YPTS_2319 2570896 - 2569940 - | DeoR family transcriptional regulator TERM 2746 2571045 - 2571034 - H 70 -7.2 -3.86283 | TTAACCTACACGAAA GGGC AAAT GCCC AAATATTGAATTTAT TERM 2747 2571811 - 2571788 - g 71 -3.1 -5.00616 | gap 1, overlap 2571789 GGGTGTTGGAAAAAA CCGGGATCGT AGATA ACGCTCC-GG TGATGGGGGAATCAT YPTS_2320 2571106 - 2572497 + | mannitol dehydrogenase domain-containing protein YPTS_2321 2573068 - 2572697 - | hypothetical protein YPTS_2322 2573272 - 2573078 - | putative lipoprotein YPTS_2323 2575965 - 2573269 - | hypothetical protein TERM 2748 2573603 - 2573589 - G 79 -11.4 -3.13908 | opp_overlap 2573586 AACGCAACCAGTCAA TCGCCG CAC CGGCGA CAGTATTGCTCTCAC YPTS_2324 2576231 - 2577223 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YPTS_2325 2577293 - 2577745 + | protein of unknown function DUF306 Meta and HslJ YPTS_2326 2578144 - 2577803 - | putative lipoprotein YPTS_2327 2578429 - 2579088 + | MgtC/SapB transporter YPTS_2328 2579480 - 2579148 - | small multidrug resistance protein TERM 2749 2582405 - 2582420 + G 75 -10.4 -3.40403 | opp_overlap 2582403 CGCTGTTCGAATATT CCGGAG CCTG CTCCGG TTGTGGTGAAACACC YPTS_2329 2579959 - 2583492 + | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 2750 2583527 - 2583552 + F 100 -13.4 -5.18995 | TGTGCGATTTACTGA GCCAGTTAGC TAAACC GCTAACTGGC TTTTTCTATTATCTT TERM 2751 2583837 - 2583827 - g 83 -8.2 -4.64144 | overlap 2583829 AACAAGCTGCAAAAA CGGC TGC GCCG TAACGTCGGCCAAGC TERM 2752 2584683 - 2584670 - g 73 -2.3 -5.09685 | GAAGACACAGAAAAA CGTCC ATCA GTACG CCTTGATGTGTTGGA YPTS_2330 2583767 - 2584708 + | PP-loop domain-containing protein YPTS_2332 2586091 - 2585882 - | hypothetical protein YPTS_2331 2584979 - 2585983 + | hypothetical protein TERM 2753 2585986 - 2586009 + gF 71 -8.8 -3.38991 | opp_overlap 2585987 2585989, overlap 2585984 2585989 TCATAGCCAGTAAAA ATAGTGGGCC AAAT GGCCCACTGA TGTTATTGGCAAAGT TERM 2754 2586008 - 2585987 - Gf 100 -10.1 -4.76041 | opp_overlap 2585986 2585984 2585989, overlap 2585989 CATAGCCAGTAAAAA TAGTGGGCC AAAT GGCCCACTG ATGTTATTGGCAAAG TERM 2755 2586006 - 2585989 - Gf 100 -12.7 -3.99327 | opp_overlap 2585986 2585984 2585989, overlap 2585987 TAGCCAGTAAAAATA GTGGGCC AAAT GGCCCAC TGATGTTATTGGCAA TERM 2756 2585989 - 2586006 + gF 89 -12.7 -2.85545 | opp_overlap 2585989 2585987, overlap 2585986 2585984 TAGCCAGTAAAAATA GTGGGCC AAAT GGCCCAC TGATGTTATTGGCAA TERM 2757 2586100 - 2586126 + FH 80 -8.7 -3.9749 | gap 1, overlap 2586100 CTTCCATGGGGGCTA G-ATCCGCGCCA CTAC TGGCGCGGACGC TTTACTCTTCTGCCT TERM 2758 2586496 - 2586482 - g 91 -7.2 -5.26875 | opp_overlap 2586482 TTTCTAATGAAAAAA TCAAGA GCA TCTTGA TGGATTACTCATCCA YPTS_2333 2586295 - 2587134 + | MerR family transcriptional regulator TERM 2759 2587310 - 2587287 - T 100 -14 -5.60993 | CGGCGCACAAAAAAA TGCCGATGTT TTTC AACATCGGCA CCGTAACAATTAAAT YPTS_2334 2588521 - 2587508 - | Mg2 transporter protein CorA family protein TERM 2760 2588703 - 2588673 - R 93 -9 -4.54323 | opp_overlap 2588675, overlap 2588675 2588679 AAGGACAAGAATAAA TGCAAAGGCGGATT TAA AATCCGCCTCTGTT AATTAGTTAAAAACA TERM 2761 2588701 - 2588675 - R 100 -16 -2.57496 | opp_overlap 2588675, overlap 2588673 2588679 GGACAAGAATAAATG CAAAGGCGGATT TAA AATCCGCCTCTG TTAATTAGTTAAAAA TERM 2762 2588675 - 2588701 + r 100 -13.8 -3.45366 | opp_overlap 2588675 2588673 2588679 GGACAAGAATAAATG CAAAGGCGGATT TAA AATCCGCCTCTG TTAATTAGTTAAAAA TERM 2763 2588697 - 2588679 - R 100 -13.2 -3.95772 | opp_overlap 2588675, overlap 2588675 2588673 AAGAATAAATGCAAA GGCGGATT TAA AATCCGCC TCTGTTAATTAGTTA YPTS_2335 2590350 - 2588734 - | extracellular solute-binding protein YPTS_2336 2590728 - 2591498 + | peptidase M14 carboxypeptidase A YPTS_2337 2592520 - 2591540 - | mandelate racemase/muconate lactonizing protein TERM 2764 2592555 - 2592571 + H 71 -9.5 -2.98368 | overlap 2592554 ACAGTTTTAGCTTAG GTATGAG ACC CTCATAC GTTTATCCGTTAAGT TERM 2765 2592577 - 2592597 + H 70 -2.5 -5.01732 | overlap 2592578 ACCCTCATACGTTTA TCCGTTAAG TCT TTAAACGGG TTTTTTAGCGAACTT YPTS_2338 2592683 - 2593186 + | redoxin domain-containing protein TERM 2766 2593279 - 2593303 + T 100 -7.8 -5.54885 | gap 1, opp_overlap 2593279 TATCGTGACTCAAAA CGGCTG-CCCC ACTC GGGTACAGCCG TTTTTTATTACTCTT TERM 2767 2593303 - 2593279 - T 88 -10 -4.18494 | gap 1, opp_overlap 2593279 TATCGTGACTCAAAA CGGCTGC-CCC ACTC GGGTACAGCCG TTTTTTATTACTCTT YPTS_2339 2594927 - 2593350 - | transcriptional regulator, TyrR YPTS_2340 2595264 - 2595710 + | hypothetical protein YPTS_2341 2595772 - 2596230 + | RES domain-containing protein YPTS_2342 2597301 - 2596240 - | hypothetical protein TERM 2768 2596661 - 2596679 + g 73 -8.8 -3.85817 | opp_overlap 2596655 2596654 ATCATCAACGCTGAT TCAGCAGC ATA GCGGCTGA TTTCTGCCCGAGCCT YPTS_2343 2598695 - 2597298 - | protein of unknown function DUF463 YcjX family protein TERM 2769 2598398 - 2598367 - G 73 -7.3 -4.1899 | gap 1, opp_overlap 2598384 TCACTGGAGCGAAAA CGTAACGCCAGACG GATTT CG-CTGACGCCACG GGTCGGCGTTGGCCA YPTS_2344 2598918 - 2598676 - | phage shock protein PspD YPTS_2345 2599362 - 2599003 - | phage shock protein C, PspC TERM 2770 2599249 - 2599228 - G 74 -3.1 -5.09173 | gap 1, overlap 2599230 GAATAGGCCAAAAAA CAGTGATAAC ACC ATTATCAC-G CGAACCAACCGTACT TERM 2771 2599248 - 2599230 - G 71 -6.8 -4.16351 | overlap 2599228 ATAGGCCAAAAAACA GTGATAAC ACC ATTATCAC GCGAACCAACCGTAC TERM 2772 2599315 - 2599335 + g 82 -5.3 -5.1675 | overlap 2599323 CCCTTTGATCATGCC CTCTTCCGG TAC CCGGTACAG TTTTTTACTGCCTAA YPTS_2346 2599589 - 2599362 - | phage shock protein B YPTS_2347 2600416 - 2599751 - | phage shock protein A, PspA YPTS_2348 2600661 - 2601689 + | sigma-54 dependent trancsriptional regulator TERM 2773 2601769 - 2601752 - f 100 -8.4 -5.81032 | GAAGGGTAAAAAAAA GCCAGC ACCCGA GCTGGC TTAAAATACTGGAAG TERM 2774 2601882 - 2601868 - f 70 -5.8 -4.28361 | TGAATCGCATCAAAA TGATAA TAC TTATCA ATATCAATTGTAAAT YPTS_2349 2602288 - 2603931 + | extracellular solute-binding protein TERM 2775 2604400 - 2604390 - g 74 -6.8 -4.45544 | CTTTATCAAGTAAAA CCAG TGA CTGG GCTGGCATTGGTCGA YPTS_2350 2603928 - 2604893 + | binding-protein-dependent transport systems inner membrane component YPTS_2351 2604880 - 2605770 + | binding-protein-dependent transport systems inner membrane component TERM 2776 2606139 - 2606152 + G 78 -8.1 -4.42238 | opp_overlap 2606137 TGGACATATAAAGGC CGCTG GTGG CAGCG TTTTCATTGGCGTAA YPTS_2352 2605770 - 2606762 + | oligopeptide/dipeptide ABC transporter, ATPase subunit YPTS_2353 2606762 - 2607577 + | ABC transporter related TERM 2777 2607618 - 2607637 + F 100 -12.2 -3.96534 | overlap 2607630 CGGTGGTTAACCTCC CCGCTATC TTTT GATAGCGG TTATCTTCTTTTAAC YPTS_2354 2607968 - 2609248 + | hypothetical protein YPTS_2355 2609861 - 2611396 + | amino acid/peptide transporter TERM 2778 2611426 - 2611407 - f 81 -9.2 -3.77607 | opp_overlap 2611408, overlap 2611408 AATAAGCTGACTAAA CGCGCTCC TGCG GGAGCGCT TTTAGTGCTAGTTAG TERM 2779 2611425 - 2611408 - f 89 -12.7 -2.85841 | opp_overlap 2611408, overlap 2611407 ATAAGCTGACTAAAC GCGCTCC TGCG GGAGCGC TTTTAGTGCTAGTTA TERM 2780 2611408 - 2611425 + F 100 -12.7 -4.33105 | opp_overlap 2611407 2611408 ATAAGCTGACTAAAC GCGCTCC TGCG GGAGCGC TTTTAGTGCTAGTTA YPTS_2356 2611652 - 2612242 + | hypothetical protein TERM 2781 2612376 - 2612388 + F 74 -4.8 -4.84492 | TCCATCAGCATTGGA GCCT CTAAC AGGC TTTTATTGTCATTAA YPTS_2357 2612488 - 2612751 + | hypothetical protein TERM 2782 2612886 - 2612857 - f 72 -9.3 -3.16553 | opp_overlap 2612850, overlap 2612855 ACAACTATCAATACA CTACAGCGGGG GAAATCAT CACCGCTGTAG GACTTGTATTGCCCC YPTS_2358 2612996 - 2613601 + | glutathione S-transferase domain-containing protein TERM 2783 2613649 - 2613619 - T 100 -15.6 -3.51694 | opp_overlap 2613616, overlap 2613615 AATAATGAGAATCAA TCAATTGCCCCC ATCACTA GGGGGCAATTGA AAATGGTTAGATTAC YPTS_2359 2614521 - 2613661 - | pyridoxal kinase TERM 2784 2614662 - 2614641 - R 87 -5.1 -5.52384 | opp_overlap 2614644, overlap 2614644 GTCTCAGCAAAAAAA TAAGGGACA TTTC TGCCCCTTC TCTTATTTTACGCTT TERM 2785 2614659 - 2614644 - R 82 -6.8 -4.8487 | opp_overlap 2614644, overlap 2614641 TCAGCAAAAAAATAA GGGACA TTTC TGCCCC TTCTCTTATTTTACG YPTS_2360 2615950 - 2614676 - | tyrosyl-tRNA synthetase TERM 2786 2615060 - 2615075 + g 76 -2.5 -5.21506 | overlap 2615055 AACATATTGCGCGCG CGGTG CTTTAC CACTG TTTTTATCTTCTTCT TERM 2787 2615231 - 2615245 + g 71 -8.6 -3.74693 | CCAGACTGCACCCCC TTCGGT TTT ACCGAA TTTAGTGCCATCGGC YPTS_2361 2616854 - 2616132 - | pyridoxamine 5'-phosphate oxidase TERM 2788 2617201 - 2617173 - R 100 -8.9 -4.67942 | CCGAAGAAAGTAAAA CTACGCCAGTC TGAGCGC GATTGGCGTAG AGAAAGATTAAGGGA YPTS_2362 2618105 - 2617209 - | aldo/keto reductase YPTS_2363 2618476 - 2618237 - | hypothetical protein TERM 2789 2618436 - 2618405 - G 100 -14.6 -4.51097 | gap 1, overlap 2618394 GCAACCACGACAAAA GCCACGGTCATCTGT TTG ACAGAT-ACCGCGGC AGGGGCTGGGAATAT TERM 2790 2618472 - 2618459 - G 77 -3.1 -5.27779 | overlap 2618464 GGGAATATCAAAAAA CTCAA GTTG CTGAG CCACGCTGCCTCCTA TERM 2791 2618775 - 2618786 + G 83 -4.4 -5.40072 | opp_overlap 2618775 GATCCGATTCGACAA TAGC GACA GCTA TTTTTTTGCAGCAAC YPTS_2364 2618650 - 2620287 + | hypothetical protein TERM 2792 2620467 - 2620486 + F 100 -5.7 -5.80364 | AGACCATAGCCTTGA TGCCAGC GCCTTG GTTGGCA TTTTTTTCTTGACCT YPTS_2365 2620530 - 2621129 + | TetR family transcriptional regulator YPTS_2366 2621217 - 2622314 + | NADH:flavin oxidoreductase/NADH oxidase YPTS_2367 2625483 - 2622535 - | YD repeat-containing protein TERM 2793 2626069 - 2626087 + G 71 -4.6 -4.64676 | CTGGCCCGGTAAAAG GCGGTAAT ACC ATTATTGC TTTTGTTGAAGATCC YPTS_2368 2625756 - 2626163 + | lactoylglutathione lyase TERM 2794 2626174 - 2626191 + F 87 -8.4 -4.48987 | opp_overlap 2626173 ACTGATTAACTTAAG GGCACC TCGGAC GGTGCC TTTTACTTATCACAA YPTS_2369 2626242 - 2626922 + | ribonuclease T TERM 2795 2626962 - 2626945 - T 100 -8.4 -5.26875 | CTTGTAATTAAAAAA GGTGGC CATTAC GCCACC TGAGGTTATTGACAA TERM 2796 2627040 - 2627066 + T 73 -10.1 -2.92924 | gap 1, opp_overlap 2627029, overlap 2627035 2627041 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTTTGCC TERM 2797 2627041 - 2627067 + T 84 -10.1 -3.89412 | gap 1, opp_overlap 2627029, overlap 2627035 2627040 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTTTGCCT TERM 2798 2627130 - 2627147 + T 79 -8.4 -4.15703 | TTGTCAGCAGTCTGA GGTGGC CATTAC GCCACC TTCTTATTTATCACA YPTS_2370 2627581 - 2627231 - | glutaredoxin-like protein YPTS_2371 2627902 - 2627681 - | hypothetical protein TERM 2799 2627907 - 2627885 - G 88 -7 -5.1287 | opp_overlap 2627885 2627891, overlap 2627888 CTCAGAGTGAAAAAA CAACAATGGC AAC GCCATTAATG TTTTCTCACAATATC TERM 2800 2627904 - 2627888 - G 80 -7.3 -4.65666 | opp_overlap 2627885 2627891, overlap 2627885 AGAGTGAAAAAACAA CAATGGC AAC GCCATTA ATGTTTTCTCACAAT TERM 2801 2628312 - 2628296 - g 71 -2.9 -4.87892 | overlap 2628299 TCGCAATAAAATAAA CAGCAGT CGG ACAACTG AAAGTAAAACTGCAG YPTS_2372 2628021 - 2628872 + | NLP/P60 protein TERM 2802 2629420 - 2629408 - g 85 -10.5 -4.1413 | opp_overlap 2629408 2629406 2629404 AAGAGATCGTGAAAA CCGCC AAT GGCGG TGTGTTTAATAATGC TERM 2803 2629408 - 2629420 + G 75 -10.5 -3.31162 | opp_overlap 2629408, overlap 2629406 2629404 AAGAGATCGTGAAAA CCGCC AAT GGCGG TGTGTTTAATAATGC YPTS_2373 2629233 - 2629811 + | manganese and iron superoxide dismutase TERM 2804 2629864 - 2629886 + F 100 -16.4 -3.6849 | opp_overlap 2629864, overlap 2629867 CATCGATAAGATAAA TAAGGGCGGT TTA ACCGCCCTTA TTATTACCGTTCACT TERM 2805 2629886 - 2629864 - f 100 -16.4 -4.28188 | opp_overlap 2629864 2629867 CATCGATAAGATAAA TAAGGGCGGT TTA ACCGCCCTTA TTATTACCGTTCACT TERM 2806 2629867 - 2629883 + F 100 -13.7 -3.97139 | opp_overlap 2629864, overlap 2629864 CGATAAGATAAATAA GGGCGGT TTA ACCGCCC TTATTATTACCGTTC TERM 2807 2630297 - 2630318 + F 75 -8.7 -3.59583 | opp_overlap 2630297 ACGATTAACATGATA CTGACCTGT TTCA ACCGGTCAG TTTAGGAGTCATTCT TERM 2808 2631049 - 2631066 + G 71 -9.1 -3.48395 | opp_overlap 2631049 2631052, overlap 2631051 ATTCTGACACAAAAA CATCGCC CAAC GGCGGTG TTCTGTGGCGGCGAT TERM 2809 2631066 - 2631049 - g 83 -6.9 -4.9725 | opp_overlap 2631049 2631051, overlap 2631052 ATTCTGACACAAAAA CATCGCC CAAC GGCGGTG TTCTGTGGCGGCGAT YPTS_2374 2630338 - 2631363 + | LacI family transcription regulator TERM 2810 2631410 - 2631430 + T 84 -9.8 -3.85092 | opp_overlap 2631413, overlap 2631404 2631413 CCGGCCCGATTCGGA TAACCGCA TTCCC TGCGGTTA TTTGCTATCGATGGT TERM 2811 2631413 - 2631427 + T 72 -7.1 -4.05208 | opp_overlap 2631413, overlap 2631404 2631410 GCCCGATTCGGATAA CCGCA TTCCC TGCGG TTATTTGCTATCGAT YPTS_2375 2632384 - 2631452 - | LysR family transcriptional regulator TERM 2812 2631935 - 2631915 - G 73 -4.5 -4.82128 | overlap 2631916 TCACGAAAGACAAAA CGCCCACCC ACT GGGATGGCA CGGGTCGCCCCTATG YPTS_2376 2632674 - 2633876 + | Bcr/CflA subfamily drug resistance transporter YPTS_2377 2634356 - 2635507 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 2813 2635517 - 2635546 + T 86 -5.7 -5.3236 | opp_overlap 2635517 2635520 2635522 2635524, overlap 2635520 CGCTAACCTCAGATA GGAGACAGGGG GATAAAAA CCCCTGTCTTA TTTTTTGTAGGTTAT TERM 2814 2635520 - 2635543 + T 100 -9.6 -4.73105 | opp_overlap 2635520 2635517 2635522 2635524, overlap 2635517 TAACCTCAGATAGGA GACAGGGG GATAAAAA CCCCTGTC TTATTTTTTGTAGGT YPTS_2378 2636214 - 2635558 - | riboflavin synthase, alpha subunit YPTS_2379 2636463 - 2637836 + | MATE efflux family protein TERM 2815 2637925 - 2637915 - f 82 -6.8 -4.87803 | overlap 2637916 TAGTCTCAAATAAAA GGGA GTC TCCC CAACAACATCTGGAT TERM 2816 2640207 - 2640197 - g 73 -3.2 -4.89393 | GAAACCGCAGAAAAA CTGG AAG CCAA AGTGATTGTGGTCGC YPTS_2380 2639093 - 2640505 + | pyruvate kinase TERM 2817 2640560 - 2640531 - f 77 -10.8 -2.77344 | opp_overlap 2640531 2640536, overlap 2640536 TTATTGTTCAATAAT TAAAACGCCGCT CTCTAT AGCGGCGTTTTC TTTTTTAAAGCTTGC TERM 2818 2640531 - 2640560 + F 100 -10.8 -5.055 | opp_overlap 2640531 2640536, overlap 2640536 TTATTGTTCAATAAT TAAAACGCCGCT CTCTAT AGCGGCGTTTTC TTTTTTAAAGCTTGC TERM 2819 2640555 - 2640536 - f 100 -10.7 -4.56133 | opp_overlap 2640536 2640531, overlap 2640531 GTTCAATAATTAAAA CGCCGCT CTCTAT AGCGGCG TTTTCTTTTTTAAAG TERM 2820 2640536 - 2640555 + F 100 -10.7 -5.42198 | opp_overlap 2640531 2640536, overlap 2640531 GTTCAATAATTAAAA CGCCGCT CTCTAT AGCGGCG TTTTCTTTTTTAAAG YPTS_2381 2640826 - 2641062 + | LPP repeat-containing protein TERM 2821 2641102 - 2641084 - T 100 -14.6 -4.8622 | opp_overlap 2641084 TTCCTGAATGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGCCCTACG TERM 2822 2641084 - 2641102 + T 100 -14.6 -5.44119 | opp_overlap 2641084 TTCCTGAATGAAAAA TGGCGCAC ATT GTGCGCCA TTTTTTTGCCCTACG TERM 2823 2641416 - 2641372 - T 90 -11.6 -3.66556 | gap 1, opp_overlap 2641364 2641359, overlap 2641373 AAGCGCGGAATACAA TTCTG-GCTTTACCACGATGG ATCT CCACCACGGTAAAGCACAGAC AAGTGATTAGTTATT TERM 2824 2641415 - 2641373 - T 100 -15.1 -2.79452 | gap 1, opp_overlap 2641364 2641359, overlap 2641372 AGCGCGGAATACAAT TCTG-GCTTTACCACGATGG ATCT CCACCACGGTAAAGCACAGA CAAGTGATTAGTTAT YPTS_2382 2642487 - 2641423 - | ErfK/YbiS/YcfS/YnhG family protein TERM 2825 2642728 - 2642716 - R 100 -9.1 -4.78149 | opp_overlap 2642715 CTCACAACGCAAAAA TGGGC AGA GCCCA ATAATTAAAGAGCAA YPTS_2383 2643180 - 2642758 - | Fe-S metabolism associated SufE TERM 2826 2643236 - 2643212 - R 91 -6.4 -5.43553 | opp_overlap 2643212 ACGTAAAAAATAAAA GCCGACTGCT GAAAG AATAGTCGGC TTTGGTGTTGCCTGT YPTS_2384 2644489 - 2643269 - | SufS subfamily cysteine desulfurase YPTS_2385 2645811 - 2644486 - | FeS assembly protein SufD TERM 2827 2645538 - 2645524 - GR 73 -10 -2.94218 | opp_overlap 2645518, overlap 2645526 ATTGGGTACCAGAGA CAGTGC ATC GCACTG CGCTGTTGTCACATC YPTS_2386 2646532 - 2645786 - | FeS assembly ATPase SufC YPTS_2387 2648228 - 2646717 - | FeS assembly protein SufB TERM 2828 2646873 - 2646886 + g 78 -5.3 -4.90906 | opp_overlap 2646873, overlap 2646881 CAAGCAATAGAACAG TTGGT CATC ACCAA TTTTTGATGTTGTGG TERM 2829 2647351 - 2647377 + g 70 -2.3 -4.83615 | gap 1, opp_overlap 2647336, overlap 2647371 CCTGCAAACCAGTTT TGCA-CGGTGGA GTAC TTCACCTCTGCA TTTTTGTGCAGAATG TERM 2830 2647434 - 2647448 + g 79 -11.4 -3.1355 | ATAGCTGTCGCGCAC GGGTGC CGA GCACCC TTCGATATAGCTGAC YPTS_2388 2648614 - 2648243 - | FeS assembly scaffold SufA TERM 2831 2648469 - 2648457 - G 71 -6.9 -4.28977 | opp_overlap 2648456 ATAACATAGGCAAAA CCGGC ACA ACCGG ACTGTTTGACGCCGA TERM 2832 2649219 - 2649201 - R 78 -5.3 -5.03314 | gap 1 GCTATTGGCAAAAAA TGACGACG TTAG CG-CGTCA ATACGGCGATCGTTA YPTS_2389 2649625 - 2649209 - | thioesterase superfamily protein YPTS_2390 2652803 - 2649747 - | FAD linked oxidase domain-containing protein TERM 2833 2650083 - 2650108 + g 95 -13.3 -3.87075 | CTCACCACTGATTTG CTGCTCTGGCT GATC AGCCAGAGCCG TTTGTAACCACTCGT TERM 2834 2650838 - 2650785 - G 76 -11.8 -2.90763 | opp_overlap 2650836 TTTACACGCCAGACA GCCAGCCATGGATTCTTTGACTTC ATGTGA GAAATCATAGACCCCTTGACTGGC CTGCCAACTGTTGCG TERM 2835 2652719 - 2652729 + g 74 -6.8 -4.4078 | opp_overlap 2652728 TAGTAGCAGTATCGC CGGT AAA ACCG TTTTGCTTCAAAGCG TERM 2836 2652769 - 2652754 - G 77 -4 -5.03747 | overlap 2652756 AAAGCGTCCAAAAAA TCCAGT ACCG ACTGAA TGACACCCGGTGCCT YPTS_2391 2653424 - 2654527 + | hypothetical protein TERM 2837 2654531 - 2654565 + F 100 -13.7 -3.06087 | overlap 2654527 2654534 GAAGAGCTTTAACCC TAAGGGGTTTGGTGG TTATT CTGCCGAACCCCTTA TATTCAGCATATATT TERM 2838 2654534 - 2654562 + F 84 -11 -3.67052 | overlap 2654527 2654531 GAGCTTTAACCCTAA GGGGTTTGGTGG TTATT CTGCCGAACCCC TTATATTCAGCATAT TERM 2839 2654701 - 2654711 + F 86 -2.6 -5.7946 | ATCTCATTCTACTTC TTAT TTA ATAA TTTTTTTATTCAGAG TERM 2840 2654871 - 2654890 + F 100 -9.3 -6.43839 | CTGTGTGTAGTCTTT GCCTGTC ACCTAA GACAGGC TTTTTTTTTTGCTAT YPTS_2392 2654966 - 2655127 + | RNA binding protein, putative TERM 2841 2655135 - 2655116 - T 100 -10 -5.47399 | overlap 2655105 TTAATTGCAAAAAAA TCCGCAAC CTAA GCTGCGGA TGATGAATACCTATA YPTS_2393 2657602 - 2655218 - | phosphoenolpyruvate synthase TERM 2842 2656125 - 2656113 - G 71 -4.7 -4.54727 | overlap 2656098 2656114 CGGGCGAAATCAAAA GCCCG GTC CGGGT TGCCAACATTCATCA YPTS_2394 2657977 - 2658798 + | hypothetical protein TERM 2843 2659070 - 2659056 - g 74 -10 -3.50393 | GGTTATTGCAGATAA CGTGAC AGC GTCACG TAAACGAATAGAGAA YPTS_2395 2658955 - 2660001 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2844 2660051 - 2660099 + T 95 -7.8 -5.00616 | gap 1, opp_overlap 2660066, overlap 2660053 2660094 ATTAAATGAATACCT TCGGGATAGGGAAAAGTTAAC GTTGTCGG GTTAACTTTT-TCTATCCCTA TTTTTTCCGAAAAAA TERM 2845 2660053 - 2660097 + T 91 -10.4 -4.13561 | gap 1, opp_overlap 2660066, overlap 2660051 2660094 TAAATGAATACCTTC GGGATAGGGAAAAGTTAAC GTTGTCGG GTTAACTTTT-TCTATCCC TATTTTTTCCGAAAA YPTS_2396 2661633 - 2660170 - | hypothetical protein YPTS_2397 2662701 - 2661685 - | lipoyltransferase and lipoate-protein ligase YPTS_2398 2663290 - 2662826 - | NLP/P60 protein YPTS_2399 2663956 - 2663570 - | hypothetical protein YPTS_2400 2664297 - 2663953 - | small multidrug resistance protein TERM 2846 2664103 - 2664076 - G 85 -9.9 -4.32571 | CAACACAAAATTAAA GCTGAGCATAG GATAGG CCACGCTCAGC GGGAGTTGCTGCAAT TERM 2847 2664224 - 2664176 - G 87 -13.1 -3.34895 | opp_overlap 2664193 GCTATCGCCAACCAA CGCAATGTCAGATTCAACCGCCG GGC CTGCGGTTGCTCCCAACACTGCG CAGCCTGTTTTTGAC YPTS_2401 2665958 - 2664294 - | glycosyl transferase family protein TERM 2848 2665759 - 2665769 + g 83 -8.2 -4.59773 | opp_overlap 2665758 2665756 2665759 TTATTAAACCAATAC CCGG CGA CCGG TTTTTCAAAATAACG YPTS_2402 2666860 - 2665955 - | polysaccharide deacetylase TERM 2849 2666724 - 2666707 - G 80 -6.9 -4.7254 | opp_overlap 2666706, overlap 2666709 AGCGCGGACGAAAAA GGCGCCA TAAA TGGCGTC CCATATTATCCGGCC YPTS_2403 2668860 - 2666857 - | NAD-dependent epimerase/dehydratase TERM 2850 2668751 - 2668741 - G 87 -6.8 -5.10767 | overlap 2668733 GACCGAAGAGAAAAA GCGA TTC TCGC CAGGATTATCAGTAT YPTS_2404 2669840 - 2668857 - | glycosyl transferase family protein TERM 2851 2669598 - 2669580 - G 81 -11 -3.76492 | opp_overlap 2669580 GCTAACCTGATTAAA TCCCGCCA TAA TGGCGGAA TGTTGACCATAATTA YPTS_2405 2670981 - 2669827 - | DegT/DnrJ/EryC1/StrS aminotransferase YPTS_2406 2672089 - 2671331 - | ABC transporter related YPTS_2407 2672668 - 2672114 - | glutathione peroxidase YPTS_2408 2673745 - 2672738 - | transport system permease protein TERM 2852 2673973 - 2673929 - R 75 -8.7 -3.63515 | opp_overlap 2673929 2673927 CTTTATTGCTAATAA GTCGCTAACTCTGCTTGGTCA TAG CAAACAAGTAAAGTTAGCAAC TGTTTGTTATGCTCG YPTS_2409 2674445 - 2673990 - | hypothetical protein TERM 2853 2674745 - 2674760 + r 100 -11.8 -4.52589 | opp_overlap 2674745 TCTTGAAAAGAAAAA GGCCGC TTGC GCGGCC TTTTATGTCGGAAAC TERM 2854 2674760 - 2674745 - R 100 -11.8 -5.45802 | opp_overlap 2674745 TCTTGAAAAGAAAAA GGCCGC TTGC GCGGCC TTTTATGTCGGAAAC YPTS_2410 2675075 - 2674779 - | integration host factor, alpha subunit YPTS_2411 2677467 - 2675080 - | phenylalanyl-tRNA synthetase, beta subunit YPTS_2412 2678464 - 2677481 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 2855 2677606 - 2677590 - G 75 -8 -4.29176 | ATACCGAATGCAAAA CCTGAG TAAAT CTCAGG ATCGATACCGACATT TERM 2856 2678348 - 2678359 + g 75 -3.6 -5.09895 | overlap 2678337 CGATGTCATTTGAAG GGTC AAGT GGCC TTTTTTACCTAGATA TERM 2857 2678773 - 2678756 - R 100 -8.4 -6.04324 | GTAAAAAACAAAAAA GCCTCC ACGATG GGAGGC TTCGGCGCTATTTTT TERM 2858 2678950 - 2678932 - R 100 -10.3 -4.49756 | opp_overlap 2678927 2678932 GTGCAAAGATTAAAA GAGGGAG ACAAG CTCCCTC TTCAATTCTGACTTA TERM 2859 2678932 - 2678950 + r 78 -10.3 -3.2496 | opp_overlap 2678932, overlap 2678927 GTGCAAAGATTAAAA GAGGGAG ACAAG CTCCCTC TTCAATTCTGACTTA YPTS_2413 2679319 - 2678963 - | ribosomal protein L20 YPTS_2414 2679554 - 2679357 - | ribosomal protein L35 YPTS_2415 2680001 - 2679651 - | initiation factor 3 YPTS_2416 2682134 - 2680206 - | threonyl-tRNA synthetase TERM 2860 2680439 - 2680451 + g 79 -3.3 -5.32565 | CTTTTGCTCTAATAC CCGCA TCT TGCAG TTTTTTGGTTACTTG TERM 2861 2682667 - 2682685 + G 85 -3 -5.56568 | overlap 2682669 ATCAAAACTTTATGT CTGCCGTT TCG AAAGGCCG TTTTTTTGATGGTGT YPTS_2417 2682525 - 2682737 + | hypothetical protein TERM 2862 2683376 - 2683403 + T 100 -13.5 -5.19275 | TGGTTACTGGAACGT CGCCCTGATTG TTTATT CAATCGGGGCG TTTTATTTTCTGGCT YPTS_2418 2683747 - 2683496 - | hypothetical protein YPTS_2419 2684066 - 2684749 + | multiple antibiotic resistance (MarC)-related protein YPTS_2420 2685533 - 2684871 - | lytic transglycosylase catalytic TERM 2863 2685422 - 2685433 + g 81 -3.6 -5.40072 | CTACGTTAAGAGAAT TGCC CTGT GGCG TTTTTTTCAGCCACC TERM 2864 2685516 - 2685503 - G 83 -6.7 -4.89477 | CCGCCAACAATAAAA TTGCC ATTA GGCAA CCGACTTTTGAATTC YPTS_2421 2685745 - 2686713 + | periplasmic solute binding protein YPTS_2422 2686710 - 2687600 + | ABC transporter related YPTS_2423 2687600 - 2688484 + | ABC-3 protein TERM 2865 2688645 - 2688662 + G 75 -5.5 -4.67755 | TTCTCATGCTGTGCT GCCAGGG ATTG TTCTGGC TTTTTGGCTCGGTAT YPTS_2424 2688481 - 2689374 + | ABC-3 protein YPTS_2426 2690647 - 2690459 - | hypothetical protein YPTS_2425 2689679 - 2690554 + | fructosamine kinase YPTS_2427 2691237 - 2690683 - | yfeABCD locus regulator TERM 2866 2691301 - 2691315 + H 76 -10 -3.36195 | overlap 2691290 2691300 2691298 ACATCCACACGTTGT GCGGTA CTT TACCGC TATGTTTGCTATTTA YPTS_2428 2691648 - 2692313 + | HAD family hydrolase TERM 2867 2692420 - 2692407 - T 71 -2.3 -5.14563 | overlap 2692388 2692387 2692408 CTTTTTAGTAAAAAA GTCGC TATA GCGAT ACGGAGTGGAAAGGA TERM 2868 2692490 - 2692461 - T 93 -10.7 -4.16842 | gap 1, opp_overlap 2692460 2692457, overlap 2692462 GTCAGCGGTAATAAA GGGCGGCCAGAGTC AGT GACTC-AGCCGCCG AATATATTTTAGAGA TERM 2869 2692489 - 2692462 - T 100 -14.2 -3.09784 | gap 1, opp_overlap 2692460 2692457, overlap 2692461 TCAGCGGTAATAAAG GGCGGCCAGAGTC AGT GACTC-AGCCGCC GAATATATTTTAGAG YPTS_2429 2692831 - 2692499 - | cupin 2 domain-containing protein YPTS_2430 2693167 - 2694003 + | 5-keto 4-deoxyuronate isomerase TERM 2870 2694035 - 2694019 - f 70 -7.2 -3.77196 | opp_overlap 2694019 GTATCACCTATTAAA GCCACC TTTAC GGCGGC TTTCACCTCCAATAA TERM 2871 2694248 - 2694268 + G 71 -4.6 -4.59773 | opp_overlap 2694245 2694248 GAGACTATCGAACAA GTGACTGC ACTGG GCCGTCGC TTTTTCAGCCTGACC YPTS_2431 2694095 - 2694856 + | 2-deoxy-D-gluconate 3-dehydrogenase TERM 2872 2694952 - 2694971 + F 100 -12.2 -6.01369 | opp_overlap 2694949 CTCAAAAACGCATCA GGCACAAC TTTG GTTGTGCC TTTTTTTATTATTTA TERM 2873 2695067 - 2695051 - f 91 -3.7 -5.83211 | CACCAAAATAAAAAA TCAAAAC AAC GTTCCGA CTTCGATCACACTTT YPTS_2432 2695201 - 2696868 + | periplasmic pectate lyase YPTS_2433 2696909 - 2697799 + | binding-protein-dependent transport systems inner membrane component YPTS_2434 2697792 - 2698712 + | binding-protein-dependent transport systems inner membrane component YPTS_2435 2698726 - 2699853 + | ABC transporter related TERM 2874 2700408 - 2700397 - g 80 -4.4 -5.30616 | opp_overlap 2700397 2700399 GTATTTAAAGAAAAA TTGG GTGA CCAA TATTACCCTGTTGTA YPTS_2436 2699869 - 2701161 + | extracellular solute-binding protein TERM 2875 2701188 - 2701225 + F 100 -14.4 -3.74693 | opp_overlap 2701188 2701193, overlap 2701193 ATTTAACTTAAGTCA CAAAATAACCCTGCCA TTTATT TGGTGGGGTTATTTTG TTTAATCAAATAAAA TERM 2876 2701225 - 2701188 - f 71 -10 -2.57192 | opp_overlap 2701188 2701193, overlap 2701193 ATTTAACTTAAGTCA CAAAATAACCCTGCCA TTTATT TGGTGGGGTTATTTTG TTTAATCAAATAAAA TERM 2877 2701193 - 2701220 + F 100 -8.5 -4.93877 | opp_overlap 2701193 2701188, overlap 2701188 ACTTAAGTCACAAAA TAACCCTGCCA TTTATT TGGTGGGGTTA TTTTGTTTAATCAAA TERM 2878 2701361 - 2701373 + F 100 -6.3 -5.71983 | opp_overlap 2701361 2701360 2701353 ATGACAACAACAAAT GAAAC ATT GTTTC TTTTTTTGTGGTTGC YPTS_2437 2701460 - 2702170 + | oligogalacturonate-specific porin TERM 2879 2702238 - 2702267 + F 100 -13.1 -5.53288 | gap 1, opp_overlap 2702245 2702246 CTCTGCATTATTTTG GGGAAAAGTTGACT CCC AGTCA-CTTTTCCC TTTTTTTAGCTTAGC TERM 2880 2703008 - 2703047 + G 81 -11.2 -3.76641 | opp_overlap 2703005 TGGCCGATATGATTA CGCCAGCCGGTGTGCCGC TATT GTGGCCCTGCCGCTGGCG TTTCAGTATTCCGCT YPTS_2438 2702650 - 2703198 + | membrane-bound metal-dependent hydrolase TERM 2881 2704568 - 2704593 + G 71 -10.3 -2.86271 | overlap 2704565 GGGTGTTGCCGGTGT GGGTGGCGGTG CAAC CTTCGCCGCCC TAATTGTACTGCCCG YPTS_2439 2703402 - 2704793 + | sodium:dicarboxylate symporter YPTS_2440 2705859 - 2705008 - | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 2882 2706121 - 2706141 + r 82 -6.8 -4.82901 | opp_overlap 2706121 TCATGTGATGAAAAA CAGCCCCT GCCAG AGGAGCTG TTTTTATAAAAAGAG TERM 2883 2706141 - 2706121 - R 100 -9 -4.7373 | opp_overlap 2706121 TCATGTGATGAAAAA CAGCCCCT GCCAG AGGAGCTG TTTTTATAAAAAGAG YPTS_2441 2707025 - 2706234 - | IclR family transcriptional regulator TERM 2884 2707199 - 2707173 - R 100 -12.4 -3.88498 | CTTGCAGACAGCAAA TTAGCCTCTTTC TAA GAGAGAGGCTAA TGGAAAACTCGGCTA YPTS_2442 2708378 - 2707212 - | WD40 domain-containing protein TERM 2885 2709161 - 2709186 + G 85 -11.3 -3.81691 | overlap 2709144 TCGAGCCCAACTTGG TCGAGGTATTG GTAT CAATACCTTGA TTGTTGCTGTGTCTT YPTS_2443 2708745 - 2710112 + | major facilitator transporter YPTS_2444 2710969 - 2710166 - | Pili assembly chaperone, N-terminal YPTS_2445 2712129 - 2710966 - | fimbrial protein YPTS_2446 2714738 - 2712126 - | fimbrial biogenesis outer membrane usher protein TERM 2886 2712442 - 2712452 + g 75 -5.4 -4.68994 | opp_overlap 2712433, overlap 2712438 GCAACAGCACCTGCG GTTG GCG CAAC TTTTTGGCTAGTACT TERM 2887 2714771 - 2714822 + r 74 -10 -3.14261 | opp_overlap 2714771 2714786, overlap 2714786 ATTAAATGCAGTATA TAAAAGTGCAAAAAATACAAATTA CCCT TAATTTGTATTTTTTATAGTTTTA TTGGGTCAGTTTTTG TERM 2888 2714822 - 2714771 - R 72 -10 -2.84999 | opp_overlap 2714771 2714786, overlap 2714786 ATTAAATGCAGTATA TAAAAGTGCAAAAAATACAAATTA CCCT TAATTTGTATTTTTTATAGTTTTA TTGGGTCAGTTTTTG TERM 2889 2714786 - 2714807 + r 95 -7.5 -5.4588 | opp_overlap 2714771 2714786, overlap 2714771 TAAAAGTGCAAAAAA TACAAATTA CCCT TAATTTGTA TTTTTTATAGTTTTA TERM 2890 2714807 - 2714786 - R 90 -7.5 -5.15117 | opp_overlap 2714786 2714771, overlap 2714771 TAAAAGTGCAAAAAA TACAAATTA CCCT TAATTTGTA TTTTTTATAGTTTTA YPTS_2447 2715599 - 2714820 - | Pili assembly chaperone, N-terminal TERM 2891 2715631 - 2715649 + r 100 -10.3 -4.386 | opp_overlap 2715630 2715629 TCGAACTTATAAAGC TGGGAGC ACTAA GCTCCCA TTTTATGCCGGATTG YPTS_2448 2716345 - 2715803 - | fimbrial protein TERM 2892 2716735 - 2716720 - RH 100 -4.8 -5.9362 | GAAAAGACAAAAAAA TTCATT TTTC AATGAA GTAAGTCACAGATTT TERM 2893 2716925 - 2716897 - gR 100 -13.2 -5.44119 | GCCACGGTAAAAAAA CACCCTGTCAGC TTACC GCTCACAGGGTG TGAAGACCATATTAT YPTS_2450 2717884 - 2717003 - | HtpX domain-containing protein YPTS_2449 2716879 - 2717067 + | hypothetical protein TERM 2894 2718325 - 2718304 - TR 100 -8.7 -6.31682 | opp_overlap 2718304 AAAAGCAAAAAAAAA TCCGAGTCC AATA AGACCCGGA TTCTTCATATTATTT YPTS_2451 2720425 - 2718347 - | carboxyl-terminal protease YPTS_2452 2721158 - 2720445 - | ProQ activator of osmoprotectant transporter ProP TERM 2895 2720702 - 2720729 + g 74 -2.7 -5.08824 | overlap 2720702 TGCGGTTTTCCGGAG CC-GCACCCGCTT CACG ACGCGG-TGCAGG TTTTTTACCTGCCGG TERM 2896 2720980 - 2721001 + g 78 -10.9 -3.29147 | GTGTAGAGACGCAGC GCAGAACGC AATT GCGTTTTGC TTAAATTCTCTTCCC TERM 2897 2721102 - 2721092 - G 80 -8.2 -4.41348 | CGGCGGTGAAACAAA GCGG GAA CCGC TCGGCCAAAAAGGCT TERM 2898 2721226 - 2721207 - R 86 -12.2 -3.1552 | overlap 2721205 GCGCAGGCATGAACA GGCGTCAT TATA ATGACGCC ATCAGCAATTGCCAC YPTS_2453 2721751 - 2721254 - | hypothetical protein TERM 2899 2721491 - 2721503 + g 75 -6.2 -4.4891 | ATGCACATTACCTAC CCGC TGAAC GCGG TTTTCTGCTACTGCG TERM 2900 2721823 - 2721842 + H 81 -10.8 -3.34936 | opp_overlap 2721779 2721823 AAAATAATCATTAAA TACCCTTG GCGA CAAGGGTA TTCCTCTGTAATGTT TERM 2901 2721842 - 2721823 - H 90 -10.8 -3.91642 | opp_overlap 2721823, overlap 2721779 AAAATAATCATTAAA TACCCTTG GCGA CAAGGGTA TTCCTCTGTAATGTT TERM 2902 2722156 - 2722171 + GH 71 -9 -3.39449 | GACCCGGTTGACCGC CATGGC TTGC GCCATG TTGCTGTTAATACCG YPTS_2454 2721878 - 2723230 + | PqiA family integral membrane protein TERM 2903 2723678 - 2723659 - gf 72 -10 -2.76671 | opp_overlap 2723659, overlap 2723658 ATACTCAGCCTAAAT TCCGCCTG AATA CAGGCGAA TTAATGATTCATCTC TERM 2904 2725110 - 2725096 - gf 73 -8.5 -3.70149 | TGTATAGTAGTGAAA CGGCC GCACG GGCCG TGGGTAGCCAGATTA YPTS_2455 2723199 - 2725850 + | hypothetical protein TERM 2905 2726561 - 2726577 + G 71 -6.5 -4.29304 | opp_overlap 2726543 2726542, overlap 2726557 GCATTCAGTGGCACA CTGAGCG GGA CTCTCAG TTTGTATTGTAGTGC YPTS_2456 2726333 - 2726887 + | spore coat U domain-containing protein YPTS_2457 2726893 - 2727423 + | spore coat U domain-containing protein YPTS_2458 2727444 - 2728001 + | spore coat U domain-containing protein YPTS_2459 2728032 - 2728784 + | pilus assembly chaperone YPTS_2460 2728870 - 2731317 + | fimbrial biogenesis outer membrane usher protein YPTS_2461 2731481 - 2732470 + | spore coat U domain-containing protein YPTS_2462 2732678 - 2732917 + | hypothetical protein YPTS_2463 2733416 - 2733027 - | hypothetical protein YPTS_2464 2733941 - 2733768 - | hypothetical protein YPTS_2465 2734441 - 2734208 - | hypothetical protein TERM 2906 2734328 - 2734354 + g 83 -2.2 -5.60993 | opp_overlap 2734328 CCATTCATCGAAAGA GTGTTCCGAG TAGCTAT CGCTGAACAC TTTTTTTATCGAGGA YPTS_2466 2735852 - 2734596 - | patatin TERM 2907 2734716 - 2734730 + g 79 -11.4 -3.19522 | opp_overlap 2734715 2734714 TCCTTCGGCATAACC CGCCTG ATA CAGGCG TTCCATCTTGACTGG TERM 2908 2736105 - 2736079 - R 72 -7.2 -3.9749 | gap 1, overlap 2736080 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCCCCAGGGATG YPTS_2467 2736493 - 2736245 - | hypothetical protein YPTS_2468 2737031 - 2736912 - | hypothetical protein YPTS_2469 2737057 - 2737251 + | hypothetical protein YPTS_2470 2737653 - 2738882 + | alanine racemase YPTS_2471 2739200 - 2739027 - | hypothetical protein YPTS_2472 2740453 - 2739500 - | hypothetical protein TERM 2909 2740515 - 2740486 - R 84 -10.7 -3.61089 | opp_overlap 2740487, overlap 2740487 CCCTAAGAAGTAGAA TCGGGCTGTGCAA AAAA TCGCACAACCCGT TAATGATTATTAAAC TERM 2910 2740487 - 2740514 + r 76 -9.8 -3.33171 | opp_overlap 2740486 2740487 CCTAAGAAGTAGAAT CGGGCTGTGCAA AAAA TCGCACAACCCG TTAATGATTATTAAA TERM 2911 2740514 - 2740487 - R 95 -14.2 -2.76171 | opp_overlap 2740487, overlap 2740486 CCTAAGAAGTAGAAT CGGGCTGTGCAA AAAA TCGCACAACCCG TTAATGATTATTAAA YPTS_2473 2743195 - 2740553 - | YadA domain-containing protein TERM 2912 2741739 - 2741725 - G 75 -11.4 -2.64747 | opp_overlap 2741733, overlap 2741724 2741727 TGACCGCATCATAAT CAGCCG AAC CGGCTG CCACACCGGTGATCT TERM 2913 2742582 - 2742605 + g 70 -9.6 -3.09933 | gap 1 GCAATAGCATCCTGA CCCGCAGGCAC GGA GT-CTTGCGGG TTCACTGAGTTGGCG TERM 2914 2742684 - 2742670 - G 79 -11.4 -3.1506 | overlap 2742673 AAAGCTGGCTACCAA CCACCG CAT CGGTGG AGGTCGATGAAACCG YPTS_2474 2744316 - 2743552 - | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 2915 2743842 - 2743821 - G 71 -7.3 -3.96624 | gap 1, overlap 2743838 TACCTGCATCATAAA GC-GCCTTCC ACG GAAAGGCTGC ACCTGGATCACTTTT TERM 2916 2744851 - 2744828 - R 100 -11.7 -4.11281 | TATGACAAGTATAAA CCGGCAGGG GCAATT CCCTACCGG TTAGCGCTATCAATA YPTS_2475 2745517 - 2744873 - | chemotaxis phosphatase, CheZ YPTS_2476 2745916 - 2745527 - | response regulator receiver protein YPTS_2477 2747066 - 2746017 - | response regulator receiver modulated CheB methylesterase TERM 2917 2746574 - 2746595 + g 71 -3.8 -4.68593 | gap 1 CCTCAGTACCGCCAG TTGAT-GCC CCAAT GGCGATCAA TTTTTCACTGCTGAG YPTS_2478 2747953 - 2747066 - | MCP methyltransferase, CheR-type TERM 2918 2747214 - 2747190 - G 77 -6.4 -4.51799 | opp_overlap 2747191, overlap 2747191 AGCAAAGGTACAAAA CGACGCAGAA TGCGT TCCTGCGTCT CTTTATCAAAATAGA TERM 2919 2747213 - 2747191 - G 73 -9.9 -3.29995 | opp_overlap 2747191, overlap 2747190 GCAAAGGTACAAAAC GACGCAGAA TGCGT TCCTGCGTC TCTTTATCAAAATAG TERM 2920 2748024 - 2748056 + r 76 -10.7 -2.60808 | overlap 2748021 CTTTACAGCCACTTG TCGTTACTCGTGATG ACC CGTTACGAGTGATGA TCGATTGTCACTCCT YPTS_2479 2749721 - 2748111 - | methyl-accepting chemotaxis sensory transducer YPTS_2480 2751578 - 2749905 - | methyl-accepting chemotaxis sensory transducer TERM 2921 2750601 - 2750613 + g 71 -6.9 -4.16251 | overlap 2750612 CAATGCTAATTGACT CGCCT GAC GGGCG TTTTCAGCGTTCTGT TERM 2922 2751178 - 2751206 + g 73 -2.5 -5.03145 | opp_overlap 2751187, overlap 2751179 AGTTCGGTTAAGGCA CTAAAATATTCCT CGT AGGACTGTTTTAA TTTTTTGGCGCCTTC TERM 2923 2751555 - 2751537 - G 71 -8.9 -3.51158 | ACCAAATAATACTAA TACCAGC AGCAG GCTGGTA ACCACTTTCATACGC YPTS_2481 2752520 - 2751819 - | putative lipoprotein TERM 2924 2751997 - 2752007 + g 77 -6.8 -4.55689 | CGGAAGATATCGGCC GGTG TAG CACC TTTTCTGTGAATAGT YPTS_2482 2755453 - 2752589 - | putative integral membrane protein TERM 2925 2753672 - 2753647 - G 75 -5.4 -4.70319 | gap 1 GTACCAAAACTAAAA GCTGACCC-GC GAGCA GCAGGGTTAGC GTAACCTGGCTGAAA TERM 2926 2754903 - 2754889 - G 71 -6.4 -4.30576 | CTTTCAGCAGGAAAA TGACAC CCA GTGCCA TGATCACACCGCCGA TERM 2927 2755939 - 2755914 - R 100 -16.2 -3.0644 | overlap 2755900 2755905 AGGCAAGCCGCAAGA GCAGGAGGGC CGGCCT GCCCTCCTGC GCGGTTGAGACGGCT TERM 2928 2756010 - 2755985 - R 71 -8.4 -3.54382 | gap 1, opp_overlap 2755984 2755989 2756009 CTGAACAAATATCAA CCAACACCTGA TCCTG TC-GGTGTTGG ATTCGTCGAAACCTT YPTS_2483 2756570 - 2756073 - | CheW protein TERM 2929 2756113 - 2756123 + g 80 -6.8 -4.70659 | AACGACATCTCTTCA CTGC TCA GCAG TTTTTCGATATCAAC YPTS_2484 2758904 - 2756733 - | CheA signal transduction histidine kinase TERM 2930 2757044 - 2757008 - G 77 -10.1 -3.55084 | overlap 2757006 2757040 TTTTAACATCAAAGA CGCGGTACAATTCAACC AAT GGTAGAAATTCACCGCG AACTTGCAGCACGCG TERM 2931 2758177 - 2758145 - G 76 -9.2 -3.96148 | opp_overlap 2758145 2758148 TCTGCTCAGCATAAA TCTGCTCTGTGTCC TCTGC GGACACAAAGCTAA TCTGCTCAGGTTCCA TERM 2932 2758148 - 2758174 + g 72 -10.9 -2.66812 | opp_overlap 2758145, overlap 2758145 GCTCAGCATAAATCT GCTCTGTGTCC TCTGC GGACACAAAGC TAATCTGCTCAGGTT TERM 2933 2758362 - 2758382 + g 74 -11.1 -2.7535 | opp_overlap 2758358 2758357, overlap 2758358 CAAACGAATACGCAT CCCGCCTTG AAG CAACGCGGG TGATGTGTTGCCAGC TERM 2934 2758885 - 2758872 - G 74 -3.1 -5.14563 | TGCTTCATCAAAAAA CGTCT GATA AAACG CGGTAATATCCATGC YPTS_2485 2760234 - 2758915 - | OmpA/MotB domain-containing protein TERM 2935 2759354 - 2759376 + g 74 -2.6 -5.03994 | opp_overlap 2759359, overlap 2759355 ACCGTCCCGTGAGTA TCAATCTGCT TTA AGCCGGTTGC TTTTTCTATATCCAG TERM 2936 2759657 - 2759679 + g 78 -11.4 -3.00476 | opp_overlap 2759648, overlap 2759662 AGATCATCGGTGTGA CCGGATAAAC TGA GTTTATTCGG TATGTCATTCAGGAT YPTS_2486 2761118 - 2760231 - | chemotaxis protein MotA TERM 2937 2760395 - 2760409 + g 80 -8.6 -4.40993 | ACAGCAGAGTCACTT TGATGC ATT GCATCA TTTTGGTCGTTTCTG YPTS_2487 2761904 - 2761323 - | flagellar transcriptional activator FlhC YPTS_2488 2762258 - 2761908 - | flagellar transcriptional activator TERM 2938 2762320 - 2762296 - R 78 -7.3 -4.45168 | GTTTTAAAACATAAA TTGAATGACAA AAT TTATCACTCAA AACCAGGGATCCTTC TERM 2939 2763412 - 2763372 - R 71 -9.1 -3.36569 | opp_overlap 2763376 2763378, overlap 2763370 2763374 2763376 CTAATCTTTTAAATA CACACACTATTCCAGGG CAGCCCC CCCCGGAATAGTGTCTT GAGATCAACCAGGCT TERM 2940 2763410 - 2763374 - R 86 -11.7 -3.24976 | opp_overlap 2763376 2763378, overlap 2763372 2763370 2763376 AATCTTTTAAATACA CACACTATTCCAGGG CAGCCCC CCCCGGAATAGTGTC TTGAGATCAACCAGG TERM 2941 2763408 - 2763376 - R 100 -14.3 -3.18571 | opp_overlap 2763376 2763378, overlap 2763374 2763372 2763370 TCTTTTAAATACACA CACTATTCCAGGG CAGCCCC CCCCGGAATAGTG TCTTGAGATCAACCA TERM 2942 2763376 - 2763408 + r 86 -12.1 -3.05844 | opp_overlap 2763374 2763372 2763370 2763376, overlap 2763378 TCTTTTAAATACACA CACTATTCCAGGG CAGCCCC CCCCGGAATAGTG TCTTGAGATCAACCA YPTS_2489 2766145 - 2763446 - | magnesium-translocating P-type ATPase TERM 2943 2765103 - 2765122 + g 73 -7.8 -4.11484 | opp_overlap 2765092, overlap 2765104 ACCACGACTTTACGC CGGGCCAT CGCG ATGGCCCC TTTTGCCAGATTAGA TERM 2944 2765104 - 2765121 + g 74 -11.3 -3.06569 | overlap 2765103 CCACGACTTTACGCC GGGCCAT CGCG ATGGCCC CTTTTGCCAGATTAG YPTS_2490 2767236 - 2766538 - | MgtC/SapB transporter TERM 2945 2768693 - 2768680 - g 80 -4.5 -5.055 | GCAAGGCCTAAAAAA TGCAG AAGG CCGCA TAGCTCAGTCACAGC TERM 2946 2769356 - 2769327 - g 75 -7.9 -4.1822 | gap 1, overlap 2769328 CTTCACTTGAACAAA CTGCGGCCAGCATG GAG CA-ACTGACCGCAA CCGTGAAACAGAATG YPTS_2491 2768342 - 2770081 + | methyl-accepting chemotaxis sensory transducer TERM 2947 2770184 - 2770213 + T 100 -8 -5.252 | gap 2, opp_overlap 2770184 GATAAAAAGCAAAAA CCGGAGGATAAGGT ATGA ACCTT--CCTCCGG TTTTTTATCGCAATA TERM 2948 2770213 - 2770184 - T 95 -8 -5.2197 | gap 2, opp_overlap 2770184 GATAAAAAGCAAAAA CCGGAGGATAAGGT ATGA ACCTT--CCTCCGG TTTTTTATCGCAATA YPTS_2492 2770455 - 2770264 - | hypothetical protein TERM 2949 2770643 - 2770630 - R 100 -9.5 -5.25893 | opp_overlap 2770630 ACAGACAGTAAAAAA CCCGC CTTA GCGGG TTTTTTTATAATCAG TERM 2950 2770630 - 2770643 + r 100 -9.5 -5.67063 | opp_overlap 2770630 ACAGACAGTAAAAAA CCCGC CTTA GCGGG TTTTTTTATAATCAG YPTS_2493 2770882 - 2770670 - | cold-shock DNA-binding domain-containing protein TERM 2951 2773147 - 2773165 + G 90 -10.2 -4.42806 | GGCATTTCGTCAGTA CCCGCGCT TAC AGGGCGGG TTTATTTGGGACTGG YPTS_2494 2771423 - 2774623 + | glycoside hydrolase family protein TERM 2952 2774809 - 2774827 + G 100 -11 -5.9003 | opp_overlap 2774808 CTTTGCAAAATTTAC GCGCTCAT CCT ATGGGCGC TTTTTTTGTTCCTTT TERM 2953 2774893 - 2774905 + G 73 -2 -5.15969 | TGATAGTTACGCACG TTCA CTCTA TGAA TTTTTTCCATTACAC YPTS_2495 2774783 - 2774926 + | hypothetical protein YPTS_2496 2775030 - 2776040 + | PIG3 family NAD(P)H quinone oxidoreductase YPTS_2497 2776154 - 2775993 - | hypothetical protein TERM 2954 2776185 - 2776165 - RH 76 -9.7 -3.37879 | opp_overlap 2776144, overlap 2776155 AGCAAGGGCAACTAA CCCCCTTCA TCT TGAAGGGCG ACGGGTATAAAGGGT YPTS_2499 2777044 - 2776796 - | hypothetical protein YPTS_2498 2776323 - 2776856 + | hypothetical protein TERM 2955 2777653 - 2777664 + G 73 -2.2 -5.03747 | GTGTGACAAAATAAC CGGT GATG ACTG TTTTTTGAGCCGTTT YPTS_2500 2777366 - 2777815 + | AsnC family transcriptional regulator TERM 2956 2778535 - 2778523 - g 71 -4.1 -4.66537 | GGTTGCAACATAAAA TCGGT ATC ACCAA GCGCCCCCGTAGCCA YPTS_2501 2777907 - 2778806 + | hypothetical protein YPTS_2502 2779109 - 2779312 + | hypothetical protein TERM 2957 2779437 - 2779449 + T 95 -3.3 -5.93809 | overlap 2779438 TTGGCCTGCCTTTTA TTGGG CCA CCCGG TTTTTTTTATGACAG YPTS_2503 2780931 - 2779606 - | histidine acid phosphatase TERM 2958 2780214 - 2780232 + g 81 -8.1 -4.51847 | opp_overlap 2780209, overlap 2780226 TCGATGATAACGCCA GTGGCCC ACTGA GGGTCAC TTTTGTCCCTTCTTT YPTS_2504 2781143 - 2781235 + | hypothetical protein YPTS_2505 2781870 - 2781463 - | HxlR family transcriptional regulator YPTS_2506 2782006 - 2782863 + | NmrA family protein TERM 2959 2784245 - 2784258 + G 71 -3.8 -4.67607 | overlap 2784242 2784241 GATCGTGCGCACGGG GTGG CTCTCC CCAC TTTCTTTGTTCCAAA YPTS_2507 2783784 - 2785364 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YPTS_2508 2785484 - 2785744 + | hypothetical protein TERM 2960 2785782 - 2785801 + F 79 -7.8 -4.2558 | overlap 2785783 TTCCTCAATACATTC AGCCCTCA ATAT TGAGGGCG TTTTACTGCCGCCTG TERM 2961 2785783 - 2785800 + F 84 -11.3 -3.15027 | overlap 2785782 TCCTCAATACATTCA GCCCTCA ATAT TGAGGGC GTTTTACTGCCGCCT TERM 2962 2786273 - 2786283 + G 80 -6.8 -4.72986 | CTGCCCGAGAGTTTG GCTG GAA CAGC TTTTTAGTGAACCTA YPTS_2509 2785999 - 2787042 + | LacI family transcription regulator TERM 2963 2787164 - 2787123 - T 100 -14.7 -3.54 | opp_overlap 2787130, overlap 2787124 2787126 2787130 AGCACGCCATAAATA GTATAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTATAG ATACGTCAGAATTAC TERM 2964 2787163 - 2787124 - T 100 -18.2 -2.71918 | opp_overlap 2787130, overlap 2787123 2787126 2787130 GCACGCCATAAATAG TATAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTATA GATACGTCAGAATTA TERM 2965 2787161 - 2787126 - T 100 -16.4 -2.90065 | opp_overlap 2787130, overlap 2787124 2787123 2787130 ACGCCATAAATAGTA TAAACTTCACGAAAGC ATAA GCCCTCGTGAAGTTTA TAGATACGTCAGAAT TERM 2966 2787130 - 2787157 + T 77 -8.4 -3.92869 | opp_overlap 2787126 2787124 2787123 2787130 CATAAATAGTATAAA CTTCACGAAAGC ATAA GCCCTCGTGAAG TTTATAGATACGTCA TERM 2967 2787157 - 2787130 - T 100 -12.8 -4.12037 | opp_overlap 2787130, overlap 2787126 2787124 2787123 CATAAATAGTATAAA CTTCACGAAAGC ATAA GCCCTCGTGAAG TTTATAGATACGTCA YPTS_2510 2788429 - 2787176 - | isocitrate dehydrogenase, NADP-dependent TERM 2968 2788503 - 2788525 + H 83 -12 -2.80113 | TGAATATTCGTTCCG CGCCAATCCG AAA CGGATTGGGG TATAATGCGCTAATC TERM 2969 2788632 - 2788650 + G 74 -9.5 -3.57389 | overlap 2788630 GCCAGGCAGTCCCCC CCCGCTG CGCCA CGGCGGG TATTGTTATTCAATA YPTS_2511 2788560 - 2789186 + | pseudouridine synthase TERM 2970 2789283 - 2789266 - g 71 -2.6 -5.00339 | overlap 2789267 ATCAACAATGAAAAA CGCTGG AACCAG CCAGCC GGTCATCTGGAAGCC YPTS_2512 2789179 - 2789625 + | NUDIX hydrolase TERM 2971 2789862 - 2789836 - g 79 -3.5 -5.30686 | opp_overlap 2789842, overlap 2789838 AATAGCCAGAAAAAA GTCATCGTCGG CATGT CCGGCGGTGTC GACTCTTCCGTTTCC TERM 2972 2790246 - 2790230 - g 71 -6.5 -4.13945 | opp_overlap 2790229 ATGTTGATGGTAAAA GCCGC CTACTGC GCGGC CTTGATGGAAATAAA YPTS_2513 2789812 - 2790927 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YPTS_2514 2790985 - 2791611 + | hypothetical protein TERM 2973 2792098 - 2792118 + G 71 -10.4 -2.8082 | overlap 2792097 GCTCGCCAGGATGTC CTGCTGCC CGCAT GGCGGCAG ATTATTGACTCAATA YPTS_2515 2791672 - 2793042 + | adenylosuccinate lyase TERM 2974 2793054 - 2793099 + F 100 -13 -3.34192 | gap 1, opp_overlap 2793057 2793059, overlap 2793057 GTAATATTTTTTATC TAATACAGGTGGC-TTAGTTT GGTAA AAGCTAACGCCATCTGTATTA TTCCTTCCCCCCCTT TERM 2975 2793057 - 2793096 + F 86 -10.3 -3.81146 | gap 1, opp_overlap 2793057 2793059, overlap 2793054 ATATTTTTTATCTAA TACAGGTGGC-TTAGTTT GGTAA AAGCTAACGCCATCTGTA TTATTCCTTCCCCCC YPTS_2516 2793072 - 2793236 + | hypothetical protein TERM 2976 2793396 - 2793376 - g 74 -6.9 -4.42386 | GTTTGACCGACAAAA TTATAGCCA TAT TGGCAATAA AAATATGGGTGGGAT YPTS_2517 2793230 - 2793853 + | lipoprotein YPTS_2518 2794064 - 2794735 + | two component transcriptional regulator TERM 2977 2795586 - 2795573 - g 73 -8.1 -4.13014 | CTCACAGCCTTAAAA CACCG CTGG CGGTG CTACAAACCACACTA YPTS_2519 2794789 - 2796195 + | integral membrane sensor signal transduction histidine kinase YPTS_2520 2796279 - 2797400 + | cupin 4 family protein TERM 2978 2797597 - 2797613 + T 93 -10.8 -4.1897 | opp_overlap 2797597 GTCAATAACCTCAAA CGCCCC TTTTC GGGGCG TTTCTCTCTATCGTT TERM 2979 2797613 - 2797597 - T 84 -10.8 -3.72051 | opp_overlap 2797597 GTCAATAACCTCAAA CGCCCC TTTTC GGGGCG TTTCTCTCTATCGTT YPTS_2521 2798868 - 2797633 - | peptidase T TERM 2980 2798455 - 2798465 + g 71 -6.8 -4.14739 | CGCTTTATCATCCGC CCCT AAC AGGG TTTTACCATCAGTCG YPTS_2522 2800034 - 2799198 - | silent information regulator protein Sir2 TERM 2981 2800071 - 2800085 + r 85 -7.2 -4.83615 | TATCTGTCTTGTTAT TAATCG TGA CGATTA TTTTTCTGCCAAATG YPTS_2523 2800997 - 2800083 - | ROK family protein TERM 2982 2800755 - 2800729 - G 74 -10.9 -2.85069 | opp_overlap 2800727, overlap 2800726 2800724 AAGCGGGAAAGATCA GCCTGCAATGG TTGCC CCATCGCAGAC GGTACATTCGCAGTA YPTS_2524 2802263 - 2801016 - | lipoprotein releasing system, transmembrane protein LolE YPTS_2525 2802967 - 2802263 - | lipoprotein releasing system, ATP-binding protein YPTS_2526 2804162 - 2802960 - | LolC/E family lipoprotein releasing system, transmembrane protein TERM 2983 2803688 - 2803672 - G 79 -10.1 -3.78775 | opp_overlap 2803672 CTCGGTACCATCAAA CGCAGTG TTT CACCGCG TTTAACCCCGAGCTG TERM 2984 2804107 - 2804091 - G 100 -10.1 -4.5123 | AAGCCACGAAACAAA CCGACCG AAG CGGTCAG AAGCACGCCCACGCA TERM 2985 2806407 - 2806385 - g 74 -6.3 -4.34486 | gap 1, overlap 2806382 2806387 ACCAATAATAAACAA GTGGCGGTGT TGGT AC-CCACCAC CCTGCTGGCTCAACA YPTS_2527 2804432 - 2807878 + | transcription-repair coupling factor YPTS_2528 2808656 - 2808117 - | 17 kDa surface antigen TERM 2986 2808785 - 2808803 + r 70 -7.3 -3.85698 | TAAAATACCGGGATA CGGCGTG CGTGA CTCGCCG TTTGTAAACACAGGG YPTS_2529 2809380 - 2808967 - | hypothetical protein YPTS_2530 2810092 - 2809388 - | hypothetical protein TERM 2987 2810284 - 2810271 - R 70 -3.7 -4.84311 | overlap 2810272 GTGCACATAAGAAAA TGCGC CGTA GCGCC AGGCCCCCCAACGTC TERM 2988 2810370 - 2810391 + r 95 -13.1 -3.15663 | overlap 2810386 TGCTAGCCCGCAGGG TGAGCCTCA CGAA TGAGGCTCA TTAATCCCGATGAGT YPTS_2531 2812119 - 2810815 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 2989 2811827 - 2811839 + g 81 -7.7 -4.6313 | opp_overlap 2811826 TGTTCATCACAAATC TCAGC CAG GCTGA TTGTTTTGTTTTCAC YPTS_2532 2813035 - 2812493 - | hypothetical protein YPTS_2533 2814194 - 2813163 - | glycoside hydrolase family 3 protein TERM 2990 2814296 - 2814284 - R 86 -7.7 -4.68919 | AAAGACAAATTAAAA CGTTG GCG CAACG GCGCGGCCCATGCCA YPTS_2534 2815131 - 2814265 - | thiamine kinase TERM 2991 2814939 - 2814959 + g 78 -7.6 -4.37658 | ATTTACGCTCACGTC GTCGGTTG ACCCC CAACTGAC TTTTGTGCGGCGATT TERM 2992 2815055 - 2815081 + g 75 -11.7 -2.72568 | gap 1, opp_overlap 2815055 2815058 2815059, overlap 2815054 2815052 ACCGGGCTAATATGA CAAT-CGGCGGT TTTC ACCGCCGGATTG ATGTTTGCTATTAAG TERM 2993 2815081 - 2815055 - G 75 -11.7 -2.73994 | gap 1, opp_overlap 2815054 2815052 2815055, overlap 2815058 2815059 ACCGGGCTAATATGA CAAT-CGGCGGT TTTC ACCGCCGGATTG ATGTTTGCTATTAAG TERM 2994 2815077 - 2815058 - G 71 -9.2 -3.52073 | opp_overlap 2815055 2815054 2815052, overlap 2815055 2815059 GGGCTAATATGACAA TCGGCGGT TTTC ACCGCCGG ATTGATGTTTGCTAT TERM 2995 2815076 - 2815059 - G 81 -12.7 -2.70923 | opp_overlap 2815055 2815054 2815052, overlap 2815058 2815055 GGCTAATATGACAAT CGGCGGT TTTC ACCGCCG GATTGATGTTTGCTA YPTS_2535 2815687 - 2815112 - | membrane lipoprotein lipid attachment site TERM 2996 2815759 - 2815747 - R 78 -10.5 -3.34428 | overlap 2815745 2815743 2815741 AAAAATAAATAGAGA CGCGC ACT GCGCG CATTAAAATTATTGT YPTS_2536 2816117 - 2815728 - | hypothetical protein YPTS_2537 2816505 - 2816152 - | histidine triad (HIT) protein YPTS_2538 2817497 - 2816679 - | shikimate dehydrogenase substrate binding subunit YPTS_2540 2818395 - 2818580 + | hypothetical protein YPTS_2541 2820457 - 2818700 - | hypothetical protein TERM 2997 2819875 - 2819899 + g 80 -6.6 -4.80853 | gap 1 CCTTATCAAGGTATT CTAATTG-TGC CTCA GCATCAATTAG TTCTTTTTTTGAAAT YPTS_2542 2820933 - 2820454 - | hypothetical protein YPTS_2543 2822102 - 2820930 - | hypothetical protein YPTS_2544 2822358 - 2822612 + | hypothetical protein YPTS_2545 2823095 - 2822622 - | putative capsid portal protein YPTS_2546 2823124 - 2823402 + | hypothetical protein YPTS_2547 2823720 - 2823938 + | hypothetical protein YPTS_2548 2823987 - 2824232 + | hypothetical protein YPTS_2549 2824210 - 2824473 + | hypothetical protein YPTS_2550 2824585 - 2824677 + | hypothetical protein TERM 2998 2824745 - 2824762 + T 74 -6.9 -4.35116 | opp_overlap 2824746, overlap 2824746 GAAACACACAAAAAA AGGAGGC TTTC GCCTCCC TTTTGCTCTCCCCTA TERM 2999 2824746 - 2824761 + T 77 -10.4 -3.20588 | opp_overlap 2824746, overlap 2824745 AAACACACAAAAAAA GGAGGC TTTC GCCTCC CTTTTGCTCTCCCCT TERM 3000 2824761 - 2824746 - T 100 -10.4 -5.82281 | opp_overlap 2824746 2824745 AAACACACAAAAAAA GGAGGC TTTC GCCTCC CTTTTGCTCTCCCCT YPTS_2551 2826218 - 2824785 - | PTS system, glucose-specific IIBC subunit TERM 3001 2825539 - 2825554 + g 70 -7.6 -3.85165 | ACCTGACCCGCTGCG TTGGTG TACT CACCAA TTTGCATTTGGAATG TERM 3002 2826422 - 2826396 - R 73 -7.3 -4.15044 | opp_overlap 2826396 2826399 GTTTCTTTCAAGAAA GCACGTAATCC CTCTC GGATTTCGTAC TTTACGTAAAGAAAC YPTS_2552 2827333 - 2826524 - | TatD family hydrolase YPTS_2553 2828370 - 2827348 - | DNA polymerase III, delta prime subunit TERM 3003 2827908 - 2827895 - G 75 -3.7 -5.17744 | overlap 2827897 2827898 AGATACCAATAAAAA CAGCG GCTA CGCAG TGTAGCCAGCAAGCT TERM 3004 2827918 - 2827897 - G 71 -6.6 -4.20491 | gap 1, overlap 2827895 2827898 ATACCAATAAAAACA GC-GGCTAC GCAGT GTAGCCAGC AAGCTGGCGGGTTGG YPTS_2554 2829008 - 2828370 - | thymidylate kinase TERM 3005 2828925 - 2828959 + g 91 -11.4 -4.18762 | gap 1, overlap 2828921 GTTAATCCCTTGGGC CCGCAGCACCGCGAC CACGGT GTCGCGG-GCGGTGG TTTTCCCTGCCCCTT YPTS_2555 2830023 - 2828998 - | aminodeoxychorismate lyase TERM 3006 2830199 - 2830173 - R 84 -10.1 -3.8381 | gap 1, opp_overlap 2830182, overlap 2830174 2830189 AGACAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3007 2830200 - 2830174 - R 72 -10.1 -2.89563 | gap 1, opp_overlap 2830182, overlap 2830173 2830189 GACAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_2556 2831118 - 2830312 - | aminodeoxychorismate lyase TERM 3008 2831455 - 2831427 - R 74 -9.6 -3.24381 | opp_overlap 2831432 2831434, overlap 2831432 ATAAGATGAATTTAA TAAAAGACCCGG AAAAA CCGGGCCTTTTT AGCATCAGAACCTTA TERM 3009 2831450 - 2831432 - R 100 -9.5 -4.72631 | opp_overlap 2831432 2831434, overlap 2831427 ATGAATTTAATAAAA GACCCGG AAAAA CCGGGCC TTTTTAGCATCAGAA TERM 3010 2831432 - 2831450 + r 81 -7.3 -4.62069 | opp_overlap 2831427 2831432, overlap 2831434 ATGAATTTAATAAAA GACCCGG AAAAA CCGGGCC TTTTTAGCATCAGAA YPTS_2557 2832722 - 2831481 - | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 3011 2832767 - 2832792 + r 86 -11.9 -2.91681 | opp_overlap 2832767 2832768 TTCGGACAAAAAAAA CTTAGGCGGTC GAAT GACCGCCTAAC TATCTAAACTTAAAG TERM 3012 2832792 - 2832767 - R 100 -11.9 -5.93809 | opp_overlap 2832767, overlap 2832768 TTCGGACAAAAAAAA CTTAGGCGGTC GAAT GACCGCCTAAC TATCTAAACTTAAAG TERM 3013 2832791 - 2832768 - R 100 -15.4 -4.15201 | opp_overlap 2832767, overlap 2832767 TCGGACAAAAAAAAC TTAGGCGGTC GAAT GACCGCCTAA CTATCTAAACTTAAA YPTS_2558 2833053 - 2832817 - | acyl carrier protein YPTS_2559 2833941 - 2833207 - | 3-oxoacyl-(acyl-carrier-protein) reductase YPTS_2560 2834884 - 2833955 - | malonyl CoA-acyl carrier protein transacylase YPTS_2561 2835872 - 2834922 - | 3-oxoacyl-(acyl-carrier-protein) synthase III TERM 3014 2835316 - 2835304 - G 74 -9.1 -3.63627 | overlap 2835313 TCTGGATACGGTAAA GCGAG CAA CTCGC CATAACGACCATCAG TERM 3015 2835430 - 2835405 - G 74 -9.9 -3.57263 | gap 1, opp_overlap 2835411, overlap 2835410 AGCGCCATCGCCAAA CAGAATGATCGT ACC ACGATC-TTCTG GATCCAATGCACGGG YPTS_2562 2836913 - 2835879 - | fatty acid/phospholipid synthesis protein PlsX YPTS_2563 2837114 - 2836947 - | ribosomal protein L32 YPTS_2564 2837651 - 2837127 - | hypothetical protein TERM 3016 2837345 - 2837391 + g 75 -11.6 -2.69471 | overlap 2837344 GCTCGTACGCTTCCG GTAATGCTTCAGCCTGCTCATC ATT GACGATCGGGCTGAAACAATAC GTTGTATGAACATGG YPTS_2565 2837793 - 2838389 + | maf protein TERM 3017 2838444 - 2838466 + T 76 -11.2 -2.56836 | opp_overlap 2838444, overlap 2838443 2838442 ACAGTCGAATAAAAA CGGGGCGCAT GCT GTGCACCCCG CCTTTTATGATCATC TERM 3018 2838466 - 2838444 - T 100 -12.7 -5.09204 | opp_overlap 2838443 2838442 2838444 ACAGTCGAATAAAAA CGGGGCGCA TGCTG TGCACCCCG CCTTTTATGATCATC YPTS_2566 2839474 - 2838512 - | RluA family pseudouridine synthase TERM 3019 2838758 - 2838775 + g 71 -9.1 -3.53811 | overlap 2838757 GATTTGATGCGTCCG GCCAGTC ACTG GGCTGGC TTTAACCAGCGTGGC TERM 3020 2839039 - 2839025 - G 79 -10 -3.83844 | overlap 2839030 TTTAGCAACCAATAA GACACC CGA GGTGTC ACGGTCTAAACGGTG YPTS_2567 2839915 - 2840028 + | hypothetical protein TERM 3021 2840651 - 2840637 - g 74 -2.7 -5.15634 | opp_overlap 2840643, overlap 2840639 GATGCGATTAAAAAA GCGGC TGAAG GTCGC CCCGCACCCTTCTTA TERM 3022 2842667 - 2842681 + G 75 -7.8 -4.18018 | opp_overlap 2842660 GGCACAATCGGCCAT GCCTCT GGC AGGGGC TTTTGCCTCACCAGA YPTS_2568 2840049 - 2843756 + | ribonuclease TERM 3023 2843827 - 2843872 + T 100 -15 -4.62957 | gap 1, overlap 2843818 2843833 2843834 CACTTTCTCTGGCGG TTGACATGGCCTGAGTTCGGT ACTGC ACCGGACTCAGGCCGT-TTAA TTTTACTTTGATTCT TERM 3024 2843833 - 2843867 + T 100 -18.7 -4.29472 | overlap 2843818 2843827 2843834 CTCTGGCGGTTGACA TGGCCTGAGTTCGGT ACTGC ACCGGACTCAGGCCG TTTAATTTTACTTTG TERM 3025 2843834 - 2843866 + T 100 -20 -3.16056 | overlap 2843818 2843833 2843827 TCTGGCGGTTGACAT GGCCTGAGTTCGGT ACTGC ACCGGACTCAGGCC GTTTAATTTTACTTT YPTS_2569 2844301 - 2844014 - | antibiotic biosynthesis monooxygenase YPTS_2570 2844536 - 2845582 + | dihydroorotase, homodimeric type YPTS_2571 2845895 - 2846140 + | DinI family protein TERM 3026 2846393 - 2846415 + F 84 -5.4 -5.26875 | overlap 2846394 2846409 ACCACAATACCATTT TGCCGGGGAG TCG CTCCTCAGCC TTTTTTGCTTAAAAC TERM 3027 2846394 - 2846414 + F 78 -8.9 -3.75402 | overlap 2846393 2846409 CCACAATACCATTTT GCCGGGGAG TCG CTCCTCAGC CTTTTTTGCTTAAAA TERM 3028 2846593 - 2846572 - f 75 -7.3 -4.371 | TTGAGTATACTAAAA CAGCTCACT CGGT AATGAGCCG CATTGATCCTCGTTA YPTS_2572 2846646 - 2846900 + | hypothetical protein TERM 3029 2846941 - 2846966 + F 95 -7.7 -5.06816 | gap 1, opp_overlap 2846941 2846939 TATTACCCATAAACA GGCACCAG-TAA ATA TTATCTGGTGTC TTTTTATTAACCACT YPTS_2573 2847151 - 2848266 + | FAD dependent oxidoreductase YPTS_2574 2848533 - 2848763 + | LuxR family regulatory protein TERM 3030 2849993 - 2850014 + G 79 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPTS_2575 2848811 - 2850019 + | transposase mutator type YPTS_2576 2850275 - 2850439 + | LuxR family transcriptional regulator YPTS_2577 2850783 - 2850896 + | hypothetical protein TERM 3031 2850952 - 2850991 + T 100 -11.4 -4.37092 | overlap 2850953 TACCCCATTTTCGGT TCCTCAGGGCCGTAGG CCAATTAA CCAGTGGCCCTGAGGG TTTTCTAACCACCGT TERM 3032 2850953 - 2850990 + T 93 -12.7 -3.21934 | overlap 2850952 ACCCCATTTTCGGTT CCTCAGGGCCGTAGG CCAATTAA CCAGTGGCCCTGAGG GTTTTCTAACCACCG YPTS_2578 2852069 - 2851011 - | hypothetical protein YPTS_2579 2853285 - 2852218 - | rhodanese domain-containing protein YPTS_2580 2853457 - 2853329 - | hypothetical protein YPTS_2581 2853808 - 2853644 - | membrane protein YPTS_2582 2854743 - 2855663 + | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPTS_2583 2855746 - 2855946 + | hypothetical protein TERM 3033 2856197 - 2856165 - f 71 -6.6 -4.23529 | gap 1, opp_overlap 2856176 ACACTAAGATATAAA GATAAAAAATGCGAT GAAT ATCG-ACTTTTTATC TCAAAATAAGATATA TERM 3034 2857740 - 2857773 + G 70 -8.1 -3.95584 | gap 1, overlap 2857741 2857764 TGATGGGACTTTGGT TCTGC-GCCAGTTCGC TTG GCAACCTGGCCGCAGG TTTGATTGGTGGCCA YPTS_2584 2856395 - 2857933 + | amino acid/peptide transporter TERM 3035 2858096 - 2858080 - T 100 -9.4 -5.03314 | GTTATCTGTAAAAAA CCAGCC CTTGT GGCTGG TTCAGATTACTGACA YPTS_2585 2858415 - 2858146 - | hypothetical protein YPTS_2586 2861113 - 2858504 - | glycosyl transferase family protein YPTS_2587 2862692 - 2861106 - | periplasmic glucan biosynthesis protein MdoG TERM 3036 2862195 - 2862206 + g 89 -5.8 -5.25803 | GGCACCGAGCATACT GACG ATTT CGTC TTTTTTATCAGCCTT YPTS_2588 2863178 - 2863561 + | osmoregulated periplasmic glucan biosynthetic protein TERM 3037 2863680 - 2863691 + F 100 -5.8 -5.9873 | ACCTTTCTTTATTCT CGGT GCTT ACCG TTTTTTTTATCCTCA TERM 3038 2864064 - 2864084 + F 79 -6.9 -4.67692 | opp_overlap 2864064, overlap 2864053 TTTTCAGGACAACTA TCCTGTTAA GTT TTATCAGGA TTTGTTTCATTTTCA YPTS_2589 2864122 - 2864367 + | hypothetical protein TERM 3039 2865842 - 2865862 + G 71 -8.3 -3.72576 | overlap 2865845 CTGGTATCACTACTT TTACAGGGT ACC ACCCTGTCA TTTGCTGCCCGCAAA TERM 3040 2866321 - 2866331 + G 71 -8.2 -3.71848 | TTTATACCTCTTTGG CGGG GAA CCCG TTATTGGTGACCAAA YPTS_2590 2864711 - 2866438 + | sodium/hydrogen exchanger TERM 3041 2866447 - 2866475 + T 73 -8.3 -3.68366 | gap 1, overlap 2866443 GGCGTAATCTCTTTA TTCACTGACGCG ATTTCA CG-GTCAGTGAA TTAGTTTTAAACTGC TERM 3042 2866540 - 2866574 + T 72 -10.1 -2.76466 | gap 1, opp_overlap 2866547 2866549, overlap 2866549 2866552 TTTTGTCACTTAATC CGAATGAGAGAGCTGC TCGA GCAGTTCTCTC-TACG TCGATTTAATTTTAT YPTS_2591 2867496 - 2866570 - | hypothetical protein TERM 3043 2867478 - 2867461 - G 72 -5.7 -4.34866 | ACCGAAGAAGACAAA CTTTTTA CTCG TAAAAAG AGGAGGACTGCGGTC YPTS_2592 2867927 - 2868571 + | autoinducer synthesis protein YPTS_2593 2869301 - 2868564 - | LuxR family transcriptional regulator TERM 3044 2868754 - 2868766 + g 87 -6.3 -5.0095 | TCATTTTCCCGAGGA GAGAA AAT TTCTC TTTTATTCTCTTTTT TERM 3045 2869402 - 2869385 - R 85 -4.2 -5.52909 | CAAGATGTAAAAAAA TGTGAT CACTGC ATCACA TTCAAATTATTGACA TERM 3046 2869647 - 2869674 + r 91 -12.1 -3.47227 | opp_overlap 2869642 GCTCTATGAACTCCG CCATCTGGGTG CATTTA CATCCAGATGG TTGTGATGCTTACCC YPTS_2594 2870713 - 2869787 - | LysR family transcriptional regulator YPTS_2595 2871037 - 2870828 - | hypothetical protein TERM 3047 2871209 - 2871186 - g 80 -4.6 -5.06451 | gap 1 TACCATCGGAAAAAA TCAGGATGGAC GAT GTCC-CCCTAA ATCGCTTCCATATAA TERM 3048 2871335 - 2871308 - g 85 -11.4 -3.78409 | opp_overlap 2871303 TTAATTCAACTCAAA CCCATAATGGCA CTTA CACCATTATGGG AGGGATTACTCGGAT YPTS_2596 2871161 - 2872519 + | general substrate transporter TERM 3049 2872695 - 2872705 + G 83 -8.2 -4.51699 | overlap 2872675 GCCTCTCCCAGTCAG GGGC ATT GCCC TTTTATCGTCGTTAT YPTS_2597 2872566 - 2873069 + | formaldehyde-activating enzyme TERM 3050 2874073 - 2874083 + G 73 -8.2 -3.90762 | GCGCGGGAAGCTCGC CCGC CAA GCGG TATTTTTGCCCCATA YPTS_2598 2873080 - 2874099 + | aldo/keto reductase TERM 3051 2874170 - 2874129 - T 71 -9.7 -2.71731 | gap 1 GTGATTCTTTAACTA TTGGCCAGTG-CAACATA AAATCAA TACGTTAACACTGGCCAA AAAGAATCAAAACCA YPTS_2599 2874731 - 2874177 - | CRISPR-associated Csy4 family protein YPTS_2600 2875746 - 2874742 - | CRISPR-associated Csy3 family protein TERM 3052 2875152 - 2875138 - G 75 -5.7 -4.62872 | ATCAACGGTGAAAAA GGCAA AACCG TTGCC CGCTAAACCTTGTTC YPTS_2601 2876714 - 2875764 - | CRISPR-associated Csy2 family protein YPTS_2602 2878057 - 2876711 - | CRISPR-associated Csy1 family protein TERM 3053 2877799 - 2877773 - G 71 -9.4 -3.59979 | opp_overlap 2877763 2877766 2877775 CGCTGGCAGGTTAAA CACACTGCTGCC TTT GGCATCACTGTG TGTGAACTTCAATGC YPTS_2603 2881503 - 2878213 - | CRISPR-associated helicase Cas3 family protein TERM 3054 2878560 - 2878538 - G 71 -9 -3.54424 | CTGGATTGTCGGAAA GGGGTGCACC GTT GCTGCTCCCC ACTCCAGGTCGCCTG TERM 3055 2878671 - 2878683 + g 75 -7.7 -4.20454 | opp_overlap 2878671 2878670 AATCAACAAAATTAT CTCGA GGT TCGAG TTTGGTTCTTTCTTG TERM 3056 2878813 - 2878824 + g 71 -4.4 -4.67353 | TTTGCAATAAACGGG GATC GCCG GATC TTTTTGAGTCAGTGC YPTS_2604 2882480 - 2881500 - | CRISPR-associated Cas1 family protein YPTS_2605 2883686 - 2884930 + | MscS mechanosensitive ion channel TERM 3057 2885459 - 2885424 - T 86 -12 -3.14132 | opp_overlap 2885417 TGGCTGGTGTACTAA TGGTGCTCTGAAATAT AAAA ATAATTCAGAGCACCG GGGCTACTATTTACA YPTS_2606 2886763 - 2885489 - | hypothetical protein TERM 3058 2886362 - 2886384 + g 75 -6.2 -4.59207 | opp_overlap 2886366 TGCACGCCATGTCCA CCAATTTGGC TCC GCCACACTGG TTTTATACTCTTTAT TERM 3059 2886555 - 2886538 - G 79 -3.3 -5.252 | overlap 2886539 GACGTTGATAAAAAA TTGCCGC GCGG GCGACAT CATCAATGGCGGATA YPTS_2607 2887917 - 2886802 - | hypothetical protein TERM 3060 2887178 - 2887195 + g 71 -8.5 -3.75332 | opp_overlap 2887181 ATACCGGCGTGCACA TTATCGG CGAC CCGATAA TTTACATTAACAAGT TERM 3061 2887364 - 2887378 + g 91 -4.2 -5.52986 | overlap 2887362 CCAATATTGTTATCG CCGC CTGTCGT GCGG TTTTTTTCGTAGCCT TERM 3062 2887561 - 2887550 - G 75 -3.6 -5.14563 | TGCTTGAGTAAAAAA CCGG TATT CCAG CCCGTATCGCCAAAA TERM 3063 2887977 - 2887992 + r 76 -2.6 -5.38047 | overlap 2887974 2887978 GGGAACTCCACCCAA TCTAAT TGAT ATTAGG TTTTTTCTATAAATC YPTS_2608 2888978 - 2888040 - | hypothetical protein YPTS_2609 2890060 - 2889005 - | glycosidase PH1107-related TERM 3064 2890088 - 2890109 + r 83 -8.7 -4.16943 | opp_overlap 2890087 2890088 TATAAATAGCAATAT CGTGGTGAG TCAT TTCACCGCG TTTTCGAGTATCAAA YPTS_2610 2891031 - 2890207 - | binding-protein-dependent transport systems inner membrane component YPTS_2611 2891907 - 2891032 - | binding-protein-dependent transport systems inner membrane component TERM 3065 2891847 - 2891819 - G 70 -2.5 -4.90778 | gap 1, opp_overlap 2891827, overlap 2891827 GCGAGCCAAATAAAA GGATAAAACCAG AATATG CTGGTAT-ATCC CAGATAAGAGGCCGC TERM 3066 2891840 - 2891827 - G 71 -3.8 -4.71401 | opp_overlap 2891827, overlap 2891819 AATAAAAGGATAAAA CCAG AATATG CTGG TATATCCCAGATAAG YPTS_2612 2893302 - 2892016 - | extracellular solute-binding protein TERM 3067 2893389 - 2893415 + H 70 -3.7 -4.79451 | opp_overlap 2893389 2893390 2893392, overlap 2893384 2893392 GCGTAATTTCGATAA TGATGTGAAGT ATTTC ACATCTCATCA TTTTATGTTTAACGT YPTS_2613 2893574 - 2894614 + | LacI family transcription regulator YPTS_2614 2894631 - 2896019 + | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 3068 2896092 - 2896059 - f 100 -14.7 -4.93177 | overlap 2896063 TAAAAACTAATAAAA TCAACCTCGCGTTCA TTAT TGAACGCGAGGGTAA ATAGCAGCATATTGT TERM 3069 2896088 - 2896063 - f 100 -17.7 -3.84772 | overlap 2896059 AACTAATAAAATCAA CCTCGCGTTCA TTAT TGAACGCGAGG GTAAATAGCAGCATA YPTS_2615 2896119 - 2897198 + | ABC transporter related YPTS_2616 2897993 - 2897463 - | hypothetical protein YPTS_2617 2898631 - 2898266 - | hypothetical protein YPTS_2618 2899399 - 2898698 - | putative hemolysin TERM 3070 2898831 - 2898866 + g 74 -9.2 -3.66018 | gap 1 TCCTTCAGCCGGTTT TGCTCTTTCTCTTTATC AAA GATAGGG-GAAAGGGCA TTGTTGGCATGCTCC TERM 3071 2899477 - 2899524 + r 100 -22.4 -3.18264 | gap 1 TATCGCTAGGCCCAA TGCCGATCAGTTAAGGATC-GGT TGA ACGAGATCCTTAACTGATCGGCA TTGCTGCATAGCAGG TERM 3072 2899588 - 2899556 - R 93 -12.1 -3.58726 | opp_overlap 2899559, overlap 2899559 GTTTTCTATAGACAA TAATTATCCTCCGGC ATA GTCGGGGGATAATTA TTCAAGGTTTAGGAT TERM 3073 2899559 - 2899585 + r 100 -13.8 -3.66772 | opp_overlap 2899559 2899556 TTCTATAGACAATAA TTATCCTCCGGC ATA GTCGGGGGATAA TTATTCAAGGTTTAG TERM 3074 2899585 - 2899559 - R 83 -9.4 -3.92996 | opp_overlap 2899559, overlap 2899556 TTCTATAGACAATAA TTATCCTCCGGC ATA GTCGGGGGATAA TTATTCAAGGTTTAG TERM 3075 2899805 - 2899791 - R 93 -2.8 -5.95539 | TCCTAAACAAAAAAA TACAGC CCA ACCGTA TAAGATAGCTAATAT YPTS_2619 2900329 - 2900078 - | hypothetical protein YPTS_2620 2901083 - 2900574 - | hypothetical protein TERM 3076 2901090 - 2901102 + r 71 -3.3 -5.02715 | overlap 2901091 CATATCCATATTATT TCACC TTC GGTGC TTTTTGGTTTGGTAT YPTS_2621 2908680 - 2901085 - | filamentous haemagglutinin outer membrane protein TERM 3077 2903165 - 2903207 + g 85 -4.7 -5.47431 | gap 1, opp_overlap 2903177 CCACTGATGCCCAGA CTGACGCCAAC-ACTGCCGC CACT GCTGCTGTTGCTGCCGTCGG TTTTTTGTGTGTTGG TERM 3078 2903692 - 2903707 + g 71 -4.6 -4.59773 | AAGCTGATTCTCCGC CGCCAG AATA CTGACG TTTTTACCGGTCAGA TERM 3079 2907850 - 2907864 + g 74 -9.2 -3.69092 | CACGGTTGGCCGCGG GCTGCC ATC GGCGGC TTTGGCGTTAATGTT YPTS_2622 2910524 - 2908836 - | polypeptide-transport-associated domain-containing protein YPTS_2623 2912145 - 2911180 - | ferredoxin TERM 3080 2911519 - 2911534 + g 79 -10.4 -3.69395 | ACCGCGTTGTGTTGC CGCCGT TTTA ACGGCG TTATTCAATGATACC TERM 3081 2911922 - 2911946 + g 100 -16.5 -3.53091 | GAATGCTCACTCAGG CGCACCGCTAT TTG GTAGCGGTGCG TTTCAAAAGGAGAAT TERM 3082 2912229 - 2912205 - R 100 -14.3 -3.54951 | TACGCTATCAGAGAA GACCCACAGCG GCT CACTGTGGGCC ATAATAATAGGCTAC YPTS_2624 2913365 - 2912241 - | Rieske (2Fe-2S) domain-containing protein YPTS_2625 2915128 - 2913482 - | cyclic nucleotide-binding protein TERM 3083 2913713 - 2913693 - G 83 -2.4 -5.57396 | overlap 2913697 AGAATCAATAAAAAA GGCAGCGC AGTGA GCACAACC GTCGTTTTCATGGTA TERM 3084 2914748 - 2914758 + g 71 -4.6 -4.57837 | GACGCTGTATTCCAG TGCC TTC GGCG TTTTTGGCGCAATAT TERM 3085 2915513 - 2915479 - R 78 -10 -3.45031 | overlap 2915474 2915481 TTCTCAAAAAGTTAA TAGGCATTCGTCCGAT TAA AACGGACGCATACCCA AACCCGCCAACGCAG TERM 3086 2915511 - 2915481 - R 78 -10.4 -3.2916 | overlap 2915479 2915474 CTCAAAAAGTTAATA GGCATTCGTCCGAT TAA AACGGACGCATACC CAAACCCGCCAACGC YPTS_2626 2915607 - 2915494 - | hypothetical protein TERM 3087 2915620 - 2915646 + r 72 -10.1 -2.88849 | gap 1, overlap 2915615 2915621 CATCCATGTTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3088 2915621 - 2915647 + r 84 -10.1 -3.82218 | gap 1, overlap 2915615 2915620 ATCCATGTTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPTS_2627 2916831 - 2915746 - | tartrate dehydrogenase YPTS_2628 2916934 - 2917875 + | LysR family transcriptional regulator YPTS_2629 2918247 - 2919251 + | LacI family transcription regulator YPTS_2630 2920376 - 2919384 - | inner-membrane translocator YPTS_2631 2921863 - 2920373 - | ABC transporter related YPTS_2632 2922837 - 2921920 - | periplasmic binding protein/LacI transcriptional regulator YPTS_2633 2924238 - 2923012 - | alcohol dehydrogenase TERM 3089 2924124 - 2924134 + g 73 -5.4 -4.56597 | overlap 2924118 GTATGGATACAATGT TGAC GTT GTCA TTTTTGAACAAACCA TERM 3090 2924592 - 2924582 - R 86 -6.8 -4.98672 | overlap 2924575 TTCAAAAAGACAAAA CGTC GGT GACG GTGAGAAATAAAAAA YPTS_2634 2925549 - 2924887 - | hypothetical protein TERM 3091 2925061 - 2925074 + g 82 -5.3 -5.08086 | TAATGATTTTATATC TCCAT GCAC ATGGA TTTTATCTTTTTTAT YPTS_2635 2926298 - 2925726 - | hypothetical protein TERM 3092 2926495 - 2926472 - R 85 -7.4 -4.81685 | AGTAACCATTAAAAA CCCCCAGC AAATCACG ACTGGGGG ATGATAAAAACACGA TERM 3093 2926549 - 2926518 - R 89 -6.6 -5.38321 | AAACACGATAAAAAA CCAAATGGCTATGG CCAG CTACAACCACTTGG CATCACGCGTAAAGG YPTS_2636 2927474 - 2926536 - | cation diffusion facilitator family transporter TERM 3094 2927729 - 2927714 - R 100 -9 -5.82316 | opp_overlap 2927713 2927714 AGCAGGCAAAAAAAA TCCGCT CGAA AGCGGA CTTTTATCAGACACA YPTS_2637 2928314 - 2927790 - | virulence-related outer membrane protein TERM 3095 2929022 - 2929005 - g 77 -6.9 -4.57837 | ACATGTCGTTAAAAA CGGTGCC ATTA GGCATCG CTGTAGCACTGGAAT TERM 3096 2929359 - 2929370 + G 75 -5.8 -4.57755 | TCTTGCCCATTGCAC TGGC CGTC GCCA TTTTGTCTACTGCAT YPTS_2638 2928719 - 2929606 + | hypothetical protein YPTS_2639 2929622 - 2930119 + | GCN5-related N-acetyltransferase TERM 3097 2930760 - 2930770 + G 71 -8.2 -3.65991 | overlap 2930759 TGGCTGCGGGCAACG GGGC TAC GCCC TTATCTTGCCCCCCT YPTS_2640 2930142 - 2930918 + | methyltransferase type 11 YPTS_2641 2931175 - 2931678 + | Ferritin Dps family protein TERM 3098 2931713 - 2931729 + F 76 -10.8 -2.71364 | opp_overlap 2931713 CTATTACGCTGAACA GGGCCG TTAAC CGGCCC TGCTTGCCGCCCTCC TERM 3099 2931729 - 2931713 - f 79 -10.8 -3.04792 | opp_overlap 2931713 CTATTACGCTGAACA GGGCCG TTAAC CGGCCC TGCTTGCCGCCCTCC TERM 3100 2932623 - 2932593 - g 84 -13.4 -2.65354 | opp_overlap 2932590, overlap 2932590 2932589 2932598 CGCAGTTGAAAGCGA CCCAAGGCGAAAAT GCG ATTGTCACCTTGGG CTATGCGTTAAATCC YPTS_2642 2931998 - 2933125 + | hypothetical protein YPTS_2643 2933694 - 2934437 + | cationic amino acid ABC transporter, periplasmic binding protein YPTS_2644 2934472 - 2935128 + | polar amino acid ABC transporter, inner membrane subunit TERM 3101 2935447 - 2935437 - g 77 -6.8 -4.63218 | overlap 2935438 TTTGGCCCAACAAAA GTGC GTG GCAC ATCCAAGGAAGAGGC YPTS_2645 2935125 - 2935847 + | ABC transporter related TERM 3102 2935954 - 2935926 - T 95 -13.2 -3.05997 | opp_overlap 2935926, overlap 2935921 TGGCTAGAAATCACA CTGGCGGACATC TTACT GATACCCGCCAG TTTTTTATAGGCTAT TERM 3103 2935926 - 2935954 + T 100 -8.8 -5.26918 | opp_overlap 2935921 2935926 TGGCTAGAAATCACA CTGGCGGACATC TTACT GATACCCGCCAG TTTTTTATAGGCTAT YPTS_2646 2937362 - 2936058 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 3104 2936114 - 2936095 - G 70 -2.1 -4.85599 | TTTACCTGAGAAAAA GTGGTCA TTAATT TCACCAC ATCTTGCATCCCCAC TERM 3105 2936230 - 2936242 + g 74 -6.3 -4.39989 | overlap 2936221 ATCGCGGCGGTAACC CCATT CTG AATGG TTTTAGTCATTTGCT YPTS_2647 2939112 - 2938147 - | hypothetical protein TERM 3106 2939064 - 2939078 + g 91 -4.2 -5.63517 | overlap 2939066 AGCGATGACGATTTC GGGGAT GCA ATCCGC TTTTTTCTTTGGGGA YPTS_2648 2939445 - 2939705 + | hypothetical protein TERM 3107 2939871 - 2939849 - T 100 -9.1 -4.78848 | CTTGGAAATACAAAA GCCCATCCG TTCAT CTGATGGGC TCAGACTGCTGACAA TERM 3108 2939960 - 2939934 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 2939943, overlap 2939935 2939950 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3109 2939961 - 2939935 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 2939943, overlap 2939934 2939950 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3110 2940039 - 2940061 + T 100 -9.1 -4.93296 | TTGTCAATAACCTCA GCCCATCCG TTCAT CTGATGGGC TTTTTCTGGTGGTGA YPTS_2649 2941046 - 2940087 - | glycosyl transferase family protein YPTS_2650 2942527 - 2941112 - | O-succinylbenzoate-CoA ligase TERM 3111 2941371 - 2941359 - G 73 -3.3 -4.93661 | ACAGGAATAACAAAA GCGTG CTG CACCC CTGAATACTGCAATA YPTS_2651 2943486 - 2942515 - | mandelate racemase/muconate lactonizing protein YPTS_2652 2944343 - 2943486 - | naphthoate synthase TERM 3112 2943783 - 2943806 + g 76 -2.3 -5.24129 | GGCATCATATTGGCG GCACAGGAA CCAAAT TTCCCGCGC TTTTTTCTGGCCGAC YPTS_2653 2945175 - 2944357 - | alpha/beta hydrolase fold protein TERM 3113 2944420 - 2944405 - G 74 -4 -4.84359 | gap 1, overlap 2944407 TGACTGTGACAAAAA TGC-CAG CAC CTGTGCA GCAAAAGCACCGGGA YPTS_2654 2946875 - 2945172 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YPTS_2655 2948470 - 2947103 - | isochorismate synthase TERM 3114 2947248 - 2947282 + g 74 -9.2 -3.6502 | TGCTGCCCATCGACT CGCGCTGAACGCAGGG CCA CACTGAATTCAGTGCG TTTAAGTGACAAATA YPTS_2656 2949659 - 2949015 - | hypothetical protein YPTS_2657 2950522 - 2950214 - | protein of unknown function DUF883 ElaB YPTS_2659 2951314 - 2951174 - | hypothetical protein YPTS_2658 2951090 - 2951233 + | hypothetical protein YPTS_2660 2953368 - 2951452 - | 6-phosphogluconate dehydratase TERM 3115 2951947 - 2951963 + g 72 -5.7 -4.4078 | AATAACCTGATGCTC CCGTGGC ACT GCCGAGG TTTTCATTACCGCCC TERM 3116 2952038 - 2952026 - G 73 -3.3 -4.91109 | CCCTGAGCAGAAAAA GGCTG TTC CAGAC TGGCGATCACCGTCG YPTS_2661 2953893 - 2953378 - | hypothetical protein YPTS_2662 2955239 - 2953923 - | major facilitator transporter TERM 3117 2954416 - 2954378 - G 90 -10.3 -4.40333 | gap 1, overlap 2954380 2954408 CGGAAATAACATAAA TACCGGCGGTGGTAGCCA CAAA TGGCAAC-ACCGCCAGAA TACCGACGGATGCCA TERM 3118 2954414 - 2954380 - G 93 -12.9 -3.79177 | gap 1, overlap 2954378 2954408 GAAATAACATAAATA CCGGCGGTGGTAGCCA CAAA TGGCAAC-ACCGCCAG AATACCGACGGATGC TERM 3119 2955526 - 2955555 + r 76 -10.8 -2.50195 | overlap 2955525 2955523 ATAATTTTCGATTGA CGCGTCAGATAA ACTTTA TTTTCTGACGCG CTATTACTCATGGAT TERM 3120 2955592 - 2955579 - R 70 -5.3 -4.50058 | CATGGATAACTAAAA TCACT AAAG AGTGA TTGAGGTTATTGACA TERM 3121 2955671 - 2955697 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2955660, overlap 2955666 2955672 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3122 2955672 - 2955698 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2955660, overlap 2955666 2955671 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPTS_2663 2956735 - 2955785 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 3123 2956969 - 2956952 - R 80 -2.7 -5.44721 | overlap 2956955 ACCATGTTAAAAAAA CATGTTA CCGG TAACGTG ACCAGCTTATCATTG TERM 3124 2957085 - 2957102 + r 72 -9.9 -2.77899 | TGTTATACGTTGGCG TCACCTG TTAA CAGGTGA TAATTGATGAGCCGA TERM 3125 2957195 - 2957167 - R 73 -5.3 -4.72272 | opp_overlap 2957172, overlap 2957172 CGTGGTGATGAAAAA TAACAGGAAACCG AAT CGACTTCCCTTTA GTCTCAGATAGTCCC TERM 3126 2957190 - 2957172 - R 70 -7.4 -3.84027 | opp_overlap 2957172, overlap 2957167 TGATGAAAAATAACA GGAAACCG AAT CGACTTCC CTTTAGTCTCAGATA YPTS_2664 2958191 - 2957199 - | LacI family transcription regulator TERM 3127 2958327 - 2958346 + H 80 -10.6 -3.5511 | overlap 2958326 CGGCAGTTACACCGT CGGGAGGG GATG CCCGCCCG TATTTCTCAATGGCA YPTS_2665 2958677 - 2959981 + | hypothetical protein TERM 3128 2960606 - 2960580 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2960589, overlap 2960581 2960596 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3129 2960607 - 2960581 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2960589, overlap 2960580 2960596 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_2666 2960615 - 2961484 + | short-chain dehydrogenase/reductase SDR TERM 3130 2961681 - 2961669 - g 100 -9.1 -5.1615 | overlap 2961671 CCAATATCCAAAAAA TGGCC GCC GGCCA GCCACTGAACGATCA YPTS_2667 2961533 - 2962069 + | carbohydrate kinase YPTS_2668 2962147 - 2962614 + | hypothetical protein YPTS_2669 2964201 - 2962933 - | hypothetical protein TERM 3131 2964393 - 2964366 - R 100 -14.2 -5.23292 | opp_overlap 2964361 CCAGATAAAACAAAA CCCCCTGTAAGC CGAT ACTCACAGGGGG TAGGGTCTATCTCGA YPTS_2670 2965903 - 2964440 - | proton-translocating NADH-quinone oxidoreductase, chain N TERM 3132 2965870 - 2965837 - G 71 -8.9 -3.45849 | TGGACAGCATCACAA CCACCACCGTCAATC CGAC GATCAACAGCGGTAG CATTGCGATCAGTTG YPTS_2671 2967442 - 2965910 - | proton-translocating NADH-quinone oxidoreductase, chain M TERM 3133 2967234 - 2967222 - G 71 -9.1 -3.61536 | AATCTAATGCCGAAA CGTGG GAT CCACG GCACATTATAATATG YPTS_2672 2969326 - 2967482 - | proton-translocating NADH-quinone oxidoreductase, chain L TERM 3134 2968382 - 2968361 - G 70 -8.1 -3.87815 | gap 1 GCCCAGCGCCAGAAA CATGTAGCCA ATC TGGCT-CATG GTGGAGTACGCCAAC YPTS_2673 2969625 - 2969323 - | NADH-ubiquinone oxidoreductase chain 4L YPTS_2674 2970167 - 2969622 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YPTS_2675 2970722 - 2970180 - | NADH-quinone oxidoreductase, chain I YPTS_2676 2971714 - 2970737 - | respiratory-chain NADH dehydrogenase subunit 1 YPTS_2677 2974455 - 2971711 - | NADH-quinone oxidoreductase, chain G TERM 3135 2972579 - 2972569 - G 71 -8.2 -3.67173 | opp_overlap 2972562, overlap 2972559 ATAAACCTGGAAGAA GCGC TGT GCGC GGCCTTCCTGATTGA YPTS_2678 2975927 - 2974542 - | NADH-quinone oxidoreductase, F subunit TERM 3136 2975767 - 2975777 + g 71 -6.8 -4.20883 | TTAACAACATCAGTG GGCA CCA TGCC TTTTAACGCTTTTTC TERM 3137 2975798 - 2975808 + g 88 -8.2 -4.7373 | ACGCTTTTTCTGCCC CGGC ATA GCCG TTTTTGCTGCGATAC YPTS_2679 2976487 - 2975924 - | NADH-quinone oxidoreductase, E subunit YPTS_2680 2978286 - 2976490 - | NADH dehydrogenase I, D subunit TERM 3138 2978189 - 2978179 - G 77 -8.2 -4.30719 | TGCTTGCACAACAAA GGCC TCA GGCC CAAAACGGTTCGACA YPTS_2681 2979106 - 2978429 - | NADH-quinone oxidoreductase, B subunit YPTS_2682 2979708 - 2979208 - | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 TERM 3139 2979890 - 2979869 - R 74 -10.3 -2.57211 | overlap 2979868 ACTCCTTTCGATAAC CTTTTGTCA ACTT TGACAAAAG TAACTACACATTAAT TERM 3140 2980034 - 2980046 + r 70 -7.7 -3.65522 | ACTATACCATTGTCT CAGGA ATA TCCTG TTCTTCCACTCAGTA TERM 3141 2980047 - 2980071 + r 78 -2.2 -5.52384 | gap 1, overlap 2980049 CTCAGGAATATCCTG TTCT-TCCACT CAGT AGTGGACAGTA TTTTTTTGATCCAGG TERM 3142 2980357 - 2980338 - R 100 -7.2 -6.32017 | gap 1, opp_overlap 2980338 AATAAATAAAAAAAA GCCCCT-TA AAA TACAGGGGC TTGTGATGATGAATT YPTS_2683 2981348 - 2980386 - | LysR family transcriptional regulator TERM 3143 2982607 - 2982569 - g 76 -11.6 -2.83403 | opp_overlap 2982569, overlap 2982568 TTTGGGTGATGAAAT GCTGGTGCCCGCACCGGA TTA CCCGCTGTGGACAGCAGC TGTGTCGCTCTCAAG TERM 3144 2982569 - 2982607 + G 74 -10.9 -2.93382 | opp_overlap 2982568 2982569 TTTGGGTGATGAAAT GCTGGTGCCCGCACCGG ATTAC CCGCTGTGGACAGCAGC TGTGTCGCTCTCAAG TERM 3145 2983078 - 2983066 - g 79 -10.5 -3.6608 | AGCATGCGATTCAAA CCGCC TTG GGCGG CTATCAGAGCATTAG YPTS_2684 2982204 - 2983418 + | aminotransferase class I and II YPTS_2685 2983569 - 2984162 + | metal dependent phosphohydrolase TERM 3146 2984146 - 2984162 + T 70 -3.7 -4.86001 | TGGATGAAATCAGCC TCGATTC ACT GGATTGA TTTTTATAGCCTGCT TERM 3147 2984165 - 2984192 + T 100 -15.8 -3.28924 | TTCACTGGATTGATT TTTATAGCCTGC TTGT GCAGGCTATAAA TTATGACAAGAGATA YPTS_2686 2984451 - 2984209 - | hypothetical protein TERM 3148 2984372 - 2984362 - G 71 -6.8 -4.15222 | ATTTTCGGCAAGAAA CTGC TCA GCAG TCATCGCATGAACAT TERM 3149 2984499 - 2984481 - R 95 -2.5 -6.09888 | TTTTAATAAAAAAAA TTTACAT AAAAA ATGCAAA TATCAGTGTAAATAT TERM 3150 2984583 - 2984601 + r 70 -7.6 -3.71649 | opp_overlap 2984583, overlap 2984581 ATCAAACAAAACTAA TGAAATAA ATA TTATTTCA TGTTTATCTATTCTA TERM 3151 2984601 - 2984583 - R 72 -7.6 -3.89235 | opp_overlap 2984583 2984581 ATCAAACAAAACTAA TGAAATAA ATA TTATTTCA TGTTTATCTATTCTA TERM 3152 2984650 - 2984661 + r 75 -3 -5.14626 | GATTAAGTTTCAGTG CTAA ATAA TTAG TTTTATTTTGATAAT YPTS_2687 2986707 - 2984875 - | citrate transporter TERM 3153 2986935 - 2986919 - R 100 -9.4 -5.42131 | opp_overlap 2986918 TAACGATACAAAAAA GGTGCC GTCGA GGCACC CTACTATTGGCTTAT YPTS_2688 2987655 - 2986999 - | HAD family hydrolase YPTS_2689 2988314 - 2987820 - | YfbU family protein YPTS_2690 2989121 - 2988666 - | hypothetical protein TERM 3154 2989007 - 2988988 - G 78 -7.8 -4.37534 | opp_overlap 2988987 2988988 AAACGGATACCAAAA CGGGTCAC TACC GTGACACG ATTCTCGGGGAACAC YPTS_2691 2989543 - 2990745 + | acetate kinase YPTS_2692 2990913 - 2993066 + | phosphate acetyltransferase TERM 3155 2993158 - 2993184 + T 72 -10.1 -2.84602 | gap 1, opp_overlap 2993147, overlap 2993153 2993159 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCCCTGCC TERM 3156 2993159 - 2993185 + T 84 -10.1 -3.74872 | gap 1, opp_overlap 2993147, overlap 2993153 2993158 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCCCTGCCT TERM 3157 2993244 - 2993275 + T 79 -10.9 -3.05463 | opp_overlap 2993250, overlap 2993250 GGGTTTGTCAGCAGT CTGAAACGCCAGC CTCTGC GCTGGCGTTTTTG TTACATCAGACACGT TERM 3158 2993250 - 2993269 + T 100 -10.7 -5.10461 | opp_overlap 2993250, overlap 2993244 GTCAGCAGTCTGAAA CGCCAGC CTCTGC GCTGGCG TTTTTGTTACATCAG TERM 3159 2993269 - 2993250 - T 84 -10.7 -3.58343 | opp_overlap 2993250 2993244 GTCAGCAGTCTGAAA CGCCAGC CTCTGC GCTGGCG TTTTTGTTACATCAG TERM 3160 2993309 - 2993295 - T 75 -7.1 -4.26589 | opp_overlap 2993294 2993302 ATCAGACACGTAAAA CAGGG AGCCG CCCTG CATTCTGGGGCGGTT TERM 3161 2993302 - 2993322 + T 87 -8.2 -4.50358 | opp_overlap 2993295, overlap 2993294 ACGTAAAACAGGGAG CCGCCCTG CATTC TGGGGCGG TTTTCCTCTTTAGGT YPTS_2693 2994366 - 2993332 - | LacI family transcription regulator TERM 3162 2993691 - 2993710 + g 83 -6.4 -4.93296 | TGGCCGCATCAGGCG TGGTGACC GTTT GGTCAGCA TTTTTGTAATGCTCG TERM 3163 2994642 - 2994608 - H 100 -15.2 -3.9712 | opp_overlap 2994632, overlap 2994626 2994627 TCATGGCATGACAAA TGATAGCGCTATCACA AAT TTTGATAGCGCTACCA GATAGCGCTATCAAT TERM 3164 2994658 - 2994626 - H 77 -8.5 -3.96624 | opp_overlap 2994632, overlap 2994608 2994627 TAGCGCTATCACAAA TTTTGATAGCGCTAC CAG ATAGCGCTATCAATT GAGATCCAGATCACA TERM 3165 2994657 - 2994627 - H 86 -12 -2.97653 | opp_overlap 2994632, overlap 2994608 2994626 AGCGCTATCACAAAT TTTGATAGCGCTAC CAG ATAGCGCTATCAAT TGAGATCCAGATCAC TERM 3166 2994632 - 2994652 + H 70 -9.8 -2.53876 | opp_overlap 2994608 2994627 2994626 TATCACAAATTTTGA TAGCGCTA CCAGA TAGCGCTA TCAATTGAGATCCAG YPTS_2694 2994733 - 2995176 + | putative PTS IIA-like nitrogen-regulatory protein PtsN YPTS_2695 2995345 - 2995632 + | phosphotransferase system lactose/cellobiose-specific IIB subunit YPTS_2696 2995645 - 2996901 + | putative sugar-specific permease SgaT/UlaA TERM 3167 2996932 - 2996949 + T 100 -12.7 -3.62572 | AAGACGTCACCATCA CCCCCTC CTTG GAGGGGG TTTAAACTGATAATA TERM 3168 2996994 - 2996970 - T 90 -5.7 -5.56673 | opp_overlap 2996970 ACTGATAATAAAAAA CCAAAGCAC TTTAGCG GGGCTTTGG TTTTTTTATTGAGCA TERM 3169 2996970 - 2996994 + T 100 -6.4 -5.7946 | opp_overlap 2996970 ACTGATAATAAAAAA CCAAAGCACT TTAGC GGGGCTTTGG TTTTTTTATTGAGCA YPTS_2697 2997566 - 2997018 - | NUDIX hydrolase YPTS_2698 2998339 - 2997788 - | phosphodiesterase TERM 3170 2998295 - 2998285 - G 71 -6.8 -4.15543 | overlap 2998287 CAAAGATCGCCAAAA CACG TTC CGTG GCCGGTAACGAACCA YPTS_2699 2999219 - 2998527 - | diguanylate phosphodiesterase TERM 3171 2999353 - 2999365 + H 100 -4.1 -6.47325 | GTTGAGCGGTTTATT GAGTC CCT GATTC TTTTTTTTATTTTTT YPTS_2700 2999573 - 3000481 + | hypothetical protein YPTS_2701 3001402 - 3000605 - | ABC transporter related YPTS_2702 3002132 - 3001416 - | polar amino acid ABC transporter, inner membrane subunit TERM 3172 3001864 - 3001846 - G 80 -3.1 -5.42259 | CCACTGCGAAAAAAA GCATTGA GCAGA TCATTGC CTCGGATTATCTCCA YPTS_2703 3002815 - 3002129 - | polar amino acid ABC transporter, inner membrane subunit TERM 3173 3002441 - 3002429 - G 85 -10.5 -4.21922 | opp_overlap 3002429 3002426 GGAGGTAAAACCAAA GGCCG TCG CGGCC TCAATTTGCCCTTTA YPTS_2704 3003693 - 3002911 - | cationic amino acid ABC transporter, periplasmic binding protein TERM 3174 3004054 - 3004025 - H 90 -7.1 -5.18995 | overlap 3004026 AACAGAATACAAAAA CCCTACTACAGCA CCAT CGCTGTTGCAGGA TCATTGTGGAGCATA TERM 3175 3004053 - 3004026 - H 73 -8.4 -3.68957 | overlap 3004025 ACAGAATACAAAAAC CCTACTACAGCA CCAT CGCTGTTGCAGG ATCATTGTGGAGCAT YPTS_2705 3004135 - 3004248 + | hypothetical protein YPTS_2706 3004817 - 3004245 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 3176 3004957 - 3004986 + r 77 -6.5 -4.71382 | gap 2, opp_overlap 3004957 CACCATGAATAAAAA GGTGCA-CC-GCG CCTAAA CGCAGGTTGCACC TTTTTGGCTCATTCT TERM 3177 3004986 - 3004957 - R 90 -7.2 -5.15167 | gap 2, opp_overlap 3004957 CACCATGAATAAAAA GGTGC-ACC-GCGC CTAA ACGCAGGTTGCACC TTTTTGGCTCATTCT YPTS_2707 3006581 - 3005064 - | amidophosphoribosyltransferase YPTS_2708 3007103 - 3006594 - | colicin V production protein TERM 3178 3006912 - 3006902 - G 80 -6.8 -4.71426 | opp_overlap 3006901 TCGCGATGAACAAAA TGCC GAT GGCA ATTCCGTTGCGAACA YPTS_2709 3008122 - 3007400 - | sporulation domain-containing protein TERM 3179 3007642 - 3007654 + g 80 -4.7 -5.06414 | opp_overlap 3007638, overlap 3007641 GGACAACATAAGCCT GCCCC ACT GGCGC TTTTTCTTCCACCGG TERM 3180 3007699 - 3007720 + g 82 -5.1 -5.05113 | GCTTAGGTTTCACTT CCAGCGG TTTTTTCT CTGCTGG TTTTGTTTCTATCGG YPTS_2710 3009546 - 3008242 - | FolC bifunctional protein TERM 3181 3009522 - 3009498 - G 95 -13.5 -3.93262 | opp_overlap 3009490 3009485 GCTCAAGATAGCAAA GCCACGCGGCC AAA GGCGACGTGGC TTGGGGAGTTTGATG TERM 3182 3009785 - 3009757 - R 76 -10.4 -2.90804 | gap 1, opp_overlap 3009757, overlap 3009756 ATAAGGCACAATAAC CGGGCACCA-TCT TACA AGAGTGATGCCCG TTGAGTTAATCAGAC YPTS_2711 3010709 - 3009795 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 3183 3009961 - 3009983 + g 71 -4.9 -4.56775 | gap 2, opp_overlap 3009961, overlap 3009960 TCAATCAGAAACTCA CTGC-G-CTGG AAG CCAGGCGGCAG TTTTTCGCGCACGGT TERM 3184 3010830 - 3010794 - R 78 -2.2 -5.4505 | gap 1, overlap 3010805 3010807 CTCTCCAATAAAAAA TGCCTGAGATACA-CGC CAGT GCGACGTGGCTAAGGCA CCGAAACTTGGATTG YPTS_2712 3011602 - 3010940 - | SNARE associated Golgi protein TERM 3185 3011804 - 3011783 - R 73 -5.1 -4.58395 | overlap 3011789 GTCATCCGCCAAAAA CAAAGGCCC CATA GGAACTTTG GGTAACGCGAAGTGG YPTS_2713 3012658 - 3011759 - | tRNA pseudouridine synthase A TERM 3186 3012555 - 3012571 + g 87 -6.5 -5.1356 | opp_overlap 3012555 AACGCAATTTTCAAA CCGGC CACTTCT GCCGG TTTTTCTTGCTGAGC YPTS_2714 3013668 - 3012658 - | semialdehyde dehydrogenase dimerisation region TERM 3187 3012794 - 3012830 + g 76 -10.7 -3.11459 | opp_overlap 3012794 3012792 CGAACGCAACCAATA CTCAGGGCATCGCTGCC GGA GGCGTCGCTGACCTGGG TTGGATAATCATCTT TERM 3188 3013776 - 3013798 + r 80 -9.1 -4.0257 | opp_overlap 3013778, overlap 3013768 3013778 ACGTTATTGAACAGC AAGGGCGGT AACAC ACCGCCCTG TTATTAATTTTTACG TERM 3189 3013778 - 3013796 + r 90 -11.7 -3.58785 | opp_overlap 3013778, overlap 3013776 3013768 GTTATTGAACAGCAA GGGCGGT AACAC ACCGCCC TGTTATTAATTTTTA TERM 3190 3013796 - 3013778 - R 95 -12.4 -3.38072 | opp_overlap 3013776 3013768 3013778 GTTATTGAACAGCAA GGGCGGTA ACA CACCGCCC TGTTATTAATTTTTA YPTS_2715 3014965 - 3013838 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YPTS_2716 3015797 - 3015012 - | AraC family transcriptional regulator YPTS_2717 3015981 - 3016898 + | hypothetical protein YPTS_2718 3017183 - 3018220 + | flagellar assembly regulatory protein, Flk TERM 3191 3018322 - 3018293 - T 93 -10.9 -4.22132 | opp_overlap 3018299, overlap 3018299 TTAAATACAAAAATA CAAAAAGCGACTA ATAT CAGTCGCTTTTTA ACAAACCGCTTACGC TERM 3192 3018316 - 3018299 - T 100 -7.7 -5.38398 | opp_overlap 3018299, overlap 3018293 ACAAAAATACAAAAA GCGACTA ATAT CAGTCGC TTTTTAACAAACCGC TERM 3193 3018299 - 3018316 + T 76 -7 -4.56597 | opp_overlap 3018299 3018293 ACAAAAATACAAAAA GCGACT AATATC AGTCGC TTTTTAACAAACCGC TERM 3194 3018536 - 3018490 - T 75 -10.5 -2.87564 | gap 1, opp_overlap 3018502 3018523 3018529, overlap 3018476 3018502 TCATTCTTTTATACA GCATATAAAAAAGCATGCAGAA TATC TTCCACATGCTTTTTT-TAAGC AATTTAGACAGCTTA TERM 3195 3018502 - 3018525 + T 84 -3.8 -5.41746 | opp_overlap 3018476 3018490 3018502, overlap 3018523 ACAGCATATAAAAAA GCATGCAGAA TATC TTCCACATGC TTTTTTTAAGCAATT TERM 3196 3018525 - 3018502 - T 100 -8.2 -5.40625 | opp_overlap 3018502 3018523, overlap 3018476 3018490 ACAGCATATAAAAAA GCATGCAGAA TATC TTCCACATGC TTTTTTTAAGCAATT YPTS_2719 3019092 - 3018562 - | fimbrial protein TERM 3197 3019806 - 3019845 + H 72 -9.2 -3.14344 | gap 1 TCACTTATAACGTGG GGGC-GCTGTCGCCCTTCA AGA TGCAGGGAGTTAGCTGCCC TTGCTCACCCCAGTC YPTS_2720 3019880 - 3020575 + | aspartate racemase TERM 3198 3020748 - 3020729 - T 100 -12.2 -5.24003 | AATAAAAAGTAAAAA GCCTACGA TCTC TCGTAGGC TTCAGACTGCTGACA TERM 3199 3020838 - 3020812 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3020821, overlap 3020813 3020828 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3200 3020839 - 3020813 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3020821, overlap 3020812 3020828 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3201 3020943 - 3020912 - T 90 -11.6 -3.62046 | opp_overlap 3020918 GCACTTTGTCAATAA CCTCAAGCCTACGA TCTC TCGTAGGCTTTGGG GAGTAAATCTGAATC TERM 3202 3020918 - 3020937 + T 91 -12.2 -3.55761 | opp_overlap 3020912 TGTCAATAACCTCAA GCCTACGA TCTC TCGTAGGC TTTGGGGAGTAAATC YPTS_2721 3022206 - 3020983 - | Beta-ketoacyl synthase YPTS_2722 3022378 - 3024447 + | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC YPTS_2723 3025027 - 3024749 - | YfcL protein YPTS_2724 3025627 - 3025085 - | hypothetical protein TERM 3203 3025505 - 3025492 - G 80 -6.7 -4.77438 | overlap 3025495 AGCCATGAGCAAAAA TCACC CGAT GGTGA GGAGATTCTTCATCG TERM 3204 3025681 - 3025653 - R 82 -10.3 -3.66883 | GTAAGAGAGGGTAAA CACCGCTAAAGTC ACC GTATTTAGCGGTG GTGGGTGCCTAAATT YPTS_2725 3026533 - 3025727 - | hypothetical protein TERM 3205 3026449 - 3026419 - G 74 -11.1 -3.04263 | gap 1, overlap 3026438 ATCCCACCGCTAACA GTGCGGGGACGGTT AACA AGCCGCCCCCGC-C GGCAATGGAATCAAT YPTS_2726 3027343 - 3026537 - | peptidase U6 penicillin-insensitive murein endopeptidase TERM 3206 3027238 - 3027216 - G 71 -9.1 -3.57462 | GACTCGAGCGGCAAA GGCTGCGCG CCAAT CACGCAACC ATTAGCAAAGCCACC YPTS_2727 3028455 - 3027370 - | chorismate synthase YPTS_2728 3029464 - 3028532 - | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific YPTS_2729 3029753 - 3030364 + | Smr protein/MutS2 TERM 3207 3030577 - 3030558 - T 100 -15 -3.8579 | AGCCAATAAGCGAAA GCGCGGCA AGAA TGCCGCGC CAGTTAGACGTTGAT YPTS_2730 3031122 - 3030646 - | phosphohistidine phosphatase, SixA YPTS_2731 3031267 - 3031109 - | hypothetical protein YPTS_2732 3031749 - 3031588 - | hypothetical protein YPTS_2733 3034078 - 3031736 - | fatty acid oxidation complex, alpha subunit FadJ TERM 3208 3032512 - 3032529 + g 73 -7 -4.21827 | AGAACCCAGCGCGAT CAGCCA CCACAA TGGCTG TTTTACCCTGTTTCC TERM 3209 3032679 - 3032654 - G 74 -11.2 -2.78813 | overlap 3032639 3032637 3032653 3032677 GTGCAGGCCAATAAC CTGCTCTGGC CGTTGT GCCAAAGCAG CAATCTGGCTGATGG TERM 3210 3033239 - 3033258 + g 71 -6.3 -4.20106 | overlap 3033257 AATAATACGTTCAGC CGCCGGG TAGTGC CCCCGCG TTTTAGCTAACGTTT TERM 3211 3033257 - 3033270 + g 79 -2.4 -5.40072 | overlap 3033239 CGGGTAGTGCCCCCG CGTT TTAGCT AACG TTTTTTTACGGACAA YPTS_2734 3035388 - 3034078 - | acetyl-CoA C-acyltransferase FadI TERM 3212 3034311 - 3034340 + g 76 -9.3 -3.85698 | opp_overlap 3034310 3034308 CGCGAGCAAAAGTAT CACTGGCAAACAT TTTC AGGTTAGCCAGTG TTTGTGCGGCGAAGG TERM 3213 3035452 - 3035440 - R 79 -7.7 -4.34559 | AAAGATAACAAATAA CAGGT CTG ACCTG ATCCGAACATTGTTA TERM 3214 3035638 - 3035618 - R 100 -12.6 -3.90425 | opp_overlap 3035618 CATCTAAAGTAATAA CGCGAAGC AAAAG GCTTCGCG TTGGTCAGGTATGTG TERM 3215 3035618 - 3035638 + r 93 -12.6 -3.18239 | opp_overlap 3035618 CATCTAAAGTAATAA CGCGAAGC AAAAG GCTTCGCG TTGGTCAGGTATGTG YPTS_2735 3035971 - 3035675 - | hypothetical protein YPTS_2736 3036385 - 3037650 + | membrane protein involved in aromatic hydrocarbon degradation TERM 3216 3037678 - 3037705 + T 100 -17.2 -4.18018 | opp_overlap 3037678 3037680 3037685, overlap 3037685 CATCACCTTATCCAA TAGAAAAGCGCC TGAT GGCGCTTTTCTA TTTTGAATACGGCGG TERM 3217 3037705 - 3037678 - T 100 -17.2 -3.07113 | opp_overlap 3037678 3037685, overlap 3037680 3037685 CATCACCTTATCCAA TAGAAAAGCGCC TGAT GGCGCTTTTCTA TTTTGAATACGGCGG TERM 3218 3037703 - 3037680 - T 100 -15.4 -3.09327 | opp_overlap 3037678 3037685, overlap 3037678 3037685 TCACCTTATCCAATA GAAAAGCGCC TGAT GGCGCTTTTC TATTTTGAATACGGC TERM 3219 3037698 - 3037685 - T 100 -9.5 -4.68724 | opp_overlap 3037685 3037678, overlap 3037680 3037678 TTATCCAATAGAAAA GCGCC TGAT GGCGC TTTTCTATTTTGAAT TERM 3220 3037685 - 3037698 + T 100 -9.5 -4.90471 | opp_overlap 3037680 3037678 3037685, overlap 3037678 TTATCCAATAGAAAA GCGCC TGAT GGCGC TTTTCTATTTTGAAT YPTS_2737 3038521 - 3037757 - | VacJ family lipoprotein TERM 3221 3038547 - 3038564 + r 78 -5.6 -4.88895 | ATGAAAGTCTGTCTA TCCCTT TCACTT AAGGGA TTTGTTTATTTATTT YPTS_2738 3039783 - 3038557 - | cytochrome c-type biogenesis protein CcmI YPTS_2739 3040295 - 3039783 - | cytochrome C biogenesis protein YPTS_2740 3040858 - 3040292 - | periplasmic protein thiol--disulphide oxidoreductase DsbE YPTS_2741 3042825 - 3040855 - | cytochrome c-type biogenesis protein CcmF TERM 3222 3041765 - 3041751 - G 71 -8.6 -3.62046 | GCATTGCGGCAATAA GCAACA CAT TGTTGC CGAGCAGGAAAGTCT TERM 3223 3041808 - 3041826 + g 73 -8.1 -4.09685 | gap 1 CTTCATGCTGAGTCC GGCTGCGC ACCT GCGC-GCC TTTTACCGCATACAG YPTS_2742 3043316 - 3042822 - | CcmE/CycJ protein YPTS_2743 3043663 - 3043313 - | heme exporter protein CcmD TERM 3224 3043621 - 3043610 - G 75 -5.8 -4.61868 | overlap 3043612 GAGCCAGACATAAAA GGCA TAGT TGCC CATGGCAAAAAATTC YPTS_2744 3044397 - 3043660 - | heme exporter protein CcmC YPTS_2745 3045119 - 3044460 - | heme exporter protein CcmB YPTS_2746 3045745 - 3045089 - | heme exporter protein CcmA TERM 3225 3045716 - 3045702 - GR 73 -5.6 -4.42464 | overlap 3045704 AACTGCTGAAATAAA CAGCGA TCA TCGCGG ATACAGGTCAGATTT YPTS_2747 3046657 - 3046190 - | hypothetical protein TERM 3226 3046946 - 3046960 + H 74 -7.8 -3.91364 | opp_overlap 3046943 3046946 TCGAACCAGTAACTA GCCCTT AGG AGGGGC TTGTTATATCCGTTT YPTS_2748 3047274 - 3047816 + | LemA family protein TERM 3227 3048906 - 3048888 - g 73 -2.4 -5.04265 | AAAAAAGAGTAAAAA CAAAAGCC CAT GGGTTTTA AACAGCCGCGATGAA YPTS_2749 3047821 - 3049860 + | hypothetical protein TERM 3228 3050169 - 3050153 - f 80 -3.7 -5.38326 | TTAATTAAATAAAAA GTGTAAA ATG TATACAC ATCAATACAGTAACC YPTS_2750 3050236 - 3050577 + | alkylphosphonate utilization operon protein PhnA TERM 3229 3050587 - 3050615 + T 78 -8.9 -3.83921 | opp_overlap 3050586 3050587 AGCTAATGCATTAAT GGGTTCTTTGC CACCCAA GCAGAGAGCCC TTCTATTATCTTGGA YPTS_2751 3050999 - 3050652 - | membrane protein YPTS_2752 3051503 - 3051024 - | type VI secretion system lysozyme-related protein TERM 3230 3051477 - 3051488 + g 88 -2.2 -5.80951 | overlap 3051479 ACGCTCTAACAACGC CGGT AAAA ACTG TTTTTTCTTTTCCAT YPTS_2753 3052374 - 3051568 - | virulence protein SciE type YPTS_2754 3053242 - 3052394 - | hypothetical protein YPTS_2755 3053502 - 3053242 - | hypothetical protein TERM 3231 3053547 - 3053581 + r 89 -11.4 -3.44377 | opp_overlap 3053545 3053543 3053541 3053539, overlap 3053546 GAAAAATCAGAGACC GCATGCTCTACGTGTG TTT CCCACGCAGAACATGC TTACCTTTTATCTAT YPTS_2756 3056531 - 3053601 - | type VI secretion system Vgr family protein TERM 3232 3053700 - 3053710 + g 73 -8.2 -3.9122 | overlap 3053686 3053703 CGGTGCCGTGGTTTC CGGC GGT GCCG TTGTTTCCGGCGGTG TERM 3233 3053703 - 3053728 + g 76 -8.9 -3.9122 | overlap 3053686 3053700 3053721 TGCCGTGGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 3234 3053721 - 3053746 + g 71 -8.9 -3.59202 | overlap 3053703 3053739 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTCTCTGGCGGTG TERM 3235 3053793 - 3053818 + g 71 -8.9 -3.59202 | overlap 3053775 3053811 TGCCGTTGTCTCTGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTCTCTGGCGGTG TERM 3236 3053883 - 3053908 + g 71 -8.9 -3.59202 | overlap 3053865 3053901 TGCCGTTGTTTCTGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTCTCTGGCGGTG TERM 3237 3053952 - 3053962 + g 73 -8.2 -3.9122 | overlap 3053938 3053952 3053955 CGGTGCCGTGGTTTC CGGC GGT GCCG TTGTTTCCGGCGGTG TERM 3238 3053988 - 3053998 + g 73 -8.2 -3.9122 | overlap 3053991 CGGTGCCGTGGTTTC CGGC GGT GCCG TTGTTTCCGGCGGTG TERM 3239 3053991 - 3054016 + g 76 -8.9 -3.9122 | overlap 3053988 3054009 TGCCGTGGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCCGGCGGTG TERM 3240 3054009 - 3054034 + g 78 -8.9 -4.07133 | overlap 3053991 3054024 3054027 TGCCGTTGTTTCCGG CGGTGCCGTTG TTTC CGGCGGTGCCG TTGTTTCTGGCGGTG TERM 3241 3054312 - 3054322 + g 73 -8.2 -3.9122 | overlap 3054310 3054315 3054315 CGGTGCCGTGGTTTC CGGC GGT GCCG TTGTTTCCGGCGGTA YPTS_2757 3060685 - 3056858 - | type VI secretion protein IcmF TERM 3242 3057078 - 3057092 + g 73 -10 -3.36492 | opp_overlap 3057076 CGAAAAAGAATATCG GGCATC GCG GATGCC TTCTGGCGTTGGGCC TERM 3243 3057557 - 3057568 + g 71 -4.4 -4.69559 | AATCGCTTTGGACGT GTGA GTAA TCAC TTTATTTTCAAATTT TERM 3244 3057886 - 3057913 + g 82 -5.6 -5.05782 | overlap 3057892 CTTTAATCAGTTTAT TTTCACGAAACG CGAT CGTTTCTTGTAA TTTTTTAGCCTGGCT TERM 3245 3057892 - 3057907 + g 70 -7.6 -3.81575 | overlap 3057886 TCAGTTTATTTTCAC GAAACG CGAT CGTTTC TTGTAATTTTTTAGC TERM 3246 3058921 - 3058956 + g 73 -7 -4.14739 | gap 1, opp_overlap 3058932 GTAACTGCTGTGTCG CGTTCAATAACGCAGGT AAG ATCTGC-TCATTGGACG TTTTGGCATAACTCA TERM 3247 3060285 - 3060299 + g 77 -6.4 -4.58663 | opp_overlap 3060285 TGCTTAATGAAGTTA TCCAGT AAC GCTGGA TTTTTCGCCAATGCT TERM 3248 3060486 - 3060476 - G 76 -8.2 -4.05446 | overlap 3060477 GGCGGCAATGACAAA GCGC GGT GCGC CGTACCAAAAACCTA YPTS_2758 3062070 - 3060694 - | type VI secretion system OmpA/MotB family protein TERM 3249 3062043 - 3062027 - G 73 -7.2 -4.25104 | CTGCTTTGATCAAAA GGAGGC ATTGA GCCCCC AAGGTTCAAATCACT YPTS_2759 3063416 - 3062067 - | type VI secretion protein TERM 3250 3062156 - 3062172 + g 79 -3.6 -5.31456 | opp_overlap 3062153, overlap 3062157 CAGCATTGGAAACCT TGTCCC AGAAG GGGCCA TTTTTTATCAATTCA TERM 3251 3062703 - 3062690 - G 75 -5.3 -4.76041 | CATATTTATTAAAAA TTTGC AGTA GCAAA TAATCGACAATTTCT YPTS_2760 3063980 - 3063420 - | hypothetical protein TERM 3252 3064185 - 3064207 + r 100 -13.4 -3.72893 | opp_overlap 3064185 CACTTATTAAGAAAA CCTGCCACCC CAA GGGTGGCAAG TTTGATAGCGACATG TERM 3253 3064207 - 3064185 - R 100 -15.6 -4.72497 | opp_overlap 3064185 CACTTATTAAGAAAA CCTGCCACCC CAA GGGTGGCAAG TTTGATAGCGACATG YPTS_2761 3064802 - 3064233 - | Hcp1 family type VI secretion system effector TERM 3254 3064565 - 3064555 - G 78 -5.4 -4.8622 | TGTGCGAAGCAAAAA TCTG AAA CAGA GGCTTTACCTGAACC TERM 3255 3064906 - 3064882 - R 70 -9.5 -2.84955 | ACAACCATTACTACA TCATTCAATAT TGA ATACTGAATGA ATAAAGGTCCCATGC YPTS_2762 3066553 - 3065051 - | EvpB family type VI secretion protein TERM 3256 3066269 - 3066283 + g 71 -8.6 -3.75024 | CCCACGCCATGCGCT TTCCAG AGA CTGGAA TTCTTGGTGGTGCAA YPTS_2763 3067101 - 3066577 - | type VI secretion protein YPTS_2764 3067815 - 3067207 - | fimbrial protein YPTS_2765 3070472 - 3067800 - | fimbrial biogenesis outer membrane usher protein TERM 3257 3068312 - 3068302 - G 77 -8.2 -4.15565 | TTGATGATGGCAAAA GGCG CAT CGCC AAGTCGTGGGCCCGC YPTS_2766 3071361 - 3070600 - | Pili assembly chaperone, N-terminal TERM 3258 3071407 - 3071456 + r 73 -10.1 -2.98493 | gap 1, opp_overlap 3071410 3071414, overlap 3071404 3071410 GCAGACTTATCTTTA TAACAGACTTGCTACCGCAGCG TTTTATC CGCCTCGGCAGCAAG-CTGTTA TGCTTTACTGCTGCG TERM 3259 3071453 - 3071410 - R 89 -11.8 -3.31461 | gap 1, opp_overlap 3071410 3071407 3071404, overlap 3071414 GACTTATCTTTATAA CAGACTTGCTACCGCAGCG TTTTATC CGCCTCGGCAGCAAG-CTG TTATGCTTTACTGCT TERM 3260 3071450 - 3071414 - R 93 -12.3 -3.17622 | opp_overlap 3071410 3071407 3071404, overlap 3071410 TATCTTTATAACAGA CTTGCTACCGCAGCG TTTTATC CGCCTCGGCAGCAAG CTGTTATGCTTTACT YPTS_2767 3072063 - 3071518 - | fimbrial protein TERM 3261 3072107 - 3072138 + r 100 -8.2 -5.52096 | opp_overlap 3072105 3072107 GATTTATTAAACATA TAGTTAATATTCGC TCAT GCCAATATTAGCTA TTTTTTATTGCCTTT YPTS_2768 3074931 - 3072274 - | type VI secretion ATPase TERM 3262 3073518 - 3073530 + g 71 -9.1 -3.54424 | overlap 3073524 3073527 TCAACTGCTCAGTAC GCGCA TCC TGCGC TTTACCAAAGTGCCG TERM 3263 3075863 - 3075875 + G 80 -2.7 -5.36441 | ACGTTGAGCGGCTGA TAGAA TCC TTCTG TTTTTTATCTGCCAG YPTS_2769 3075760 - 3077595 + | type VI secretion protein TERM 3264 3077784 - 3077739 - g 73 -7.5 -4.26076 | gap 1 CCAGCGCCAGGAAAA GCGC-CCTTGCCTGAACAGGAA GCC TTCCGCATCGGGCAAAGTGCGC ACATGACGTTCTCTC TERM 3265 3077799 - 3077820 + G 85 -12.3 -3.28712 | overlap 3077794 CACATGACGTTCTCT CCGCGTGAG ATAT CTCATGCGG TTATGAAAGACGGGA YPTS_2770 3077595 - 3078620 + | type VI secretion protein TERM 3266 3079466 - 3079446 - g 73 -9.7 -3.29511 | TTGATGCCGCGATAA CCCCGATAG CGC CTATCGTGG TGCCAGAACCTATTG YPTS_2771 3078719 - 3079912 + | ImpA domain-containing protein TERM 3267 3080126 - 3080114 - g 78 -5.5 -4.85599 | CCTATCCTAGAAAAA GTGGC ACA ACCAC AAGGCTTGGCAGTGA YPTS_2772 3079919 - 3080950 + | hypothetical protein TERM 3268 3081965 - 3081949 - g 81 -5.7 -4.89233 | CATCAATATTAAAAA CCGGGCG GTG CATCCGG ATGCCGCGGGTGAAA TERM 3269 3081999 - 3081986 - g 88 -2.4 -5.75342 | opp_overlap 3081986 GCGGGTGAAAAAAAA GTGA GCTTCT TCAC TGATCTTCCCACATC YPTS_2773 3080990 - 3082327 + | hypothetical protein TERM 3270 3082795 - 3082773 - f 71 -7 -4.07687 | opp_overlap 3082778 ATCCTTGCGCCAAAA TGTCATCGCC ACT GACGATGATA TCGACCCAGAGGAGT TERM 3271 3083117 - 3083131 + G 76 -7.2 -4.34912 | opp_overlap 3083116 ATTTTAAGGGAAATG CGTTAT GGA ATAACG TTATTTTCATTACTT TERM 3272 3084001 - 3083980 - g 77 -6.5 -4.64334 | overlap 3083981 3083995 3083996 AAGCCTGCAATAAAA CCACGGGTG AAAA CACCGGTGA TAAAACCTATCCCCG YPTS_2776 3083026 - 3084708 + | OmpA/MotB domain-containing protein YPTS_2777 3084705 - 3085187 + | hypothetical protein TERM 3273 3085201 - 3085238 + T 83 -12.2 -2.73994 | opp_overlap 3085204, overlap 3085198 AATTTTTGAGCGATA TCACGTCATGCTAAAT AACCCG ACTTAGCATGACGTGG TCGTATTGGCAGAAT TERM 3274 3085235 - 3085204 - T 88 -12.5 -2.64616 | opp_overlap 3085201 3085198 TTTTGAGCGATATCA CGTCATGCTAAAT AACCCG ACTTAGCATGACG TGGTCGTATTGGCAG YPTS_2778 3086162 - 3085560 - | LuxR family transcriptional regulator TERM 3275 3087400 - 3087372 - R 100 -11.7 -4.6635 | opp_overlap 3087372 AAATCGTTAAGAAAA GAGGGCGGCATAA CCC TAATGCGGCCCTC TTTTTCATGCTATTG TERM 3276 3087372 - 3087400 + r 100 -11.7 -4.8083 | opp_overlap 3087372 AAATCGTTAAGAAAA GAGGGCGGCATAA CCC TAATGCGGCCCTC TTTTTCATGCTATTG YPTS_2779 3088504 - 3087410 - | lytic murein transglycosylase B TERM 3277 3088412 - 3088395 - G 79 -3.3 -5.26875 | opp_overlap 3088397, overlap 3088396 3088397 GGCTCAAGTAAAAAA CCGCCCT GAAC AGGGCTA TCTGACGGGGTTGCA TERM 3278 3088666 - 3088642 - H 73 -10.1 -3.06133 | opp_overlap 3088646, overlap 3088644 3088646 CAATGGCTGACGCAA TATAGGGCG CGTTTAC CGCCCTATA TCCCCTCACAACATT YPTS_2780 3088833 - 3089852 + | extracellular solute-binding protein TERM 3279 3089865 - 3089878 + F 76 -9.5 -3.53091 | TAATCCGTTTTACTC CGCCC CTGC GGGCG TTTAACAAACCGAGT TERM 3280 3090255 - 3090265 + G 74 -6.8 -4.386 | opp_overlap 3090246, overlap 3090252 GCAATAGCACCACTG GCAG TGC CTGC TTTTGTACAAAGTTA TERM 3281 3090313 - 3090327 + G 73 -3.4 -4.99035 | overlap 3090314 TCCCCTCAATGAATG GGCTGG CCG CCGGCG TTTTTATCTCGGTGA TERM 3282 3091274 - 3091286 + G 71 -9.1 -3.50737 | overlap 3091270 TGCTCCCGGCGCCGC TGCGG GTG CCGCA TTAGTCTTTCTGGCT YPTS_2781 3089907 - 3091493 + | binding-protein-dependent transport systems inner membrane component YPTS_2782 3091490 - 3092539 + | ABC transporter related YPTS_2783 3093136 - 3092612 - | hypothetical protein TERM 3283 3093423 - 3093398 - RH 79 -10.7 -3.00986 | overlap 3093395 AACCACATTAAATTA TGTTTTGTTTT AAAA AAAACAAAACA CTCACCATTATAATT YPTS_2785 3094205 - 3093960 - | hypothetical protein YPTS_2784 3093603 - 3094082 + | Hcp1 family type VI secretion system effector TERM 3284 3094091 - 3094110 + gT 100 -13.6 -4.11346 | opp_overlap 3094087 GTATTAATTTATTCG GGGATGGC CTAC GCCATCCC TTATTATTTACGTGT YPTS_2786 3095160 - 3094312 - | hypothetical protein TERM 3285 3095633 - 3095618 - H 89 -6.2 -5.28481 | overlap 3095610 GATTTAATCAAAAAA TTGAGA CTTT TCTCAA GAAAGTGAAGTAGAT TERM 3286 3097384 - 3097374 - g 89 -3.2 -5.63012 | AAAAATAAAGAAAAA CTGG ATA CCAA TATTAAGTTTCTCTG TERM 3287 3097460 - 3097484 + G 71 -4.3 -4.75288 | TAAAACCAATACTAT TTTGCAAGATG AGT CATTGTGCGAA TTTATTTTGGTCTGG YPTS_2787 3095991 - 3098417 + | anaerobic dimethyl sulfoxide reductase subunit A YPTS_2788 3098429 - 3099046 + | dimethylsulfoxide reductase, chain B TERM 3288 3099784 - 3099794 + G 71 -4.6 -4.53163 | TCGGTGAATTAGCCG GGCG GAT TGCC TTTTATAATCTCTGG YPTS_2789 3099048 - 3099824 + | putative dimethyl sulfoxide reductase chain C protein TERM 3289 3099860 - 3099879 + F 77 -6.4 -4.60487 | overlap 3099863 TTCCATGTGGTGATT TACCCGCT GATT AGCGGCTA TTTTTGCGGCTAATC YPTS_2790 3100306 - 3100902 + | cytoplasmic chaperone TorD family protein YPTS_2791 3100899 - 3101468 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 3290 3101506 - 3101519 + T 71 -6.7 -4.13767 | ACTGCACCTTATTCA GTTGG GTAT CCAAC TTTTGGGGTGCAGCC YPTS_2792 3102370 - 3101714 - | hypothetical protein TERM 3291 3102109 - 3102119 + g 73 -3.2 -4.93288 | overlap 3102118 TAATATCACCCGCGT TGGT CAT GCCA TTTTGTTTAAATGTT YPTS_2793 3102723 - 3102367 - | putative lipoprotein YPTS_2794 3103421 - 3102750 - | curli production assembly/transport component CsgG TERM 3292 3104260 - 3104247 - g 73 -4.5 -4.7373 | GGAGGGGATTAAAAA CGGCA TTGC TACCG AGATGGAAGAGCGCC YPTS_2795 3104107 - 3104538 + | hypothetical protein YPTS_2796 3105157 - 3104633 - | cytochrome B561 YPTS_2797 3106637 - 3105402 - | aminotransferase class I and II TERM 3293 3106097 - 3106066 - G 93 -7.4 -5.40474 | gap 1, opp_overlap 3106071 ACTCGTTCAAAAAAA TCCAACTCAACA-CA TTG CGCTGTTGGGTTGGA TGGAAAACCGAGGAT TERM 3294 3106196 - 3106171 - G 85 -4.7 -5.40474 | AGCTCGCCAAAAAAA TCAATGCCTTC GGTC AACGGCACTGA ACGCACTTGCGCACC TERM 3295 3106682 - 3106700 + H 70 -7.4 -3.88787 | overlap 3106684 3106699 ACCGTCCGAGCGACG CTGACCAT CAG ATGGTCTG TTTATGAACATATCC TERM 3296 3106684 - 3106698 + H 71 -8.6 -3.53174 | overlap 3106682 CGTCCGAGCGACGCT GACCAT CAG ATGGTC TGTTTATGAACATAT TERM 3297 3107147 - 3107137 - g 73 -3.2 -4.91429 | AAAGCGCAAATAAAA CAAC GCG GCTG TTGTGCCATTCTCGG TERM 3298 3107429 - 3107403 - g 71 -9.4 -3.59293 | opp_overlap 3107403, overlap 3107399 GCAAACCGAAAGCAA CGGTAAGCAACA TTT TGATGCTAACCG TGTCGTCACCTATGC YPTS_2798 3106903 - 3108150 + | hypothetical protein TERM 3299 3108166 - 3108196 + T 84 -9.8 -3.78934 | opp_overlap 3108168 CCTTCTTCCGCATCA TATCTGCCGGAA CTTATCC TCCCGGCAGATA TTCTTCTGCGCCCAC TERM 3300 3108194 - 3108168 - T 75 -10.2 -2.78384 | opp_overlap 3108166 TTCTTCCGCATCATA TCTGCCGGAA CTTATCC TCCCGGCAGA TATTCTTCTGCGCCC YPTS_2799 3109199 - 3108228 - | glucokinase TERM 3301 3108675 - 3108689 + g 73 -7.8 -3.98981 | opp_overlap 3108674 CTCCTGGCGCAATAC GGCCAG AAT CTGGTC TTCTTCTTCACTATT YPTS_2800 3109856 - 3109380 - | transmembrane pair domain-containing protein TERM 3302 3110781 - 3110770 - g 93 -7.2 -5.40072 | overlap 3110772 TTTGGTCGAAAAAAA GCCC ACCG GGGC CTGCTGGCTATTGGC YPTS_2801 3109959 - 3110837 + | LysR family transcriptional regulator YPTS_2802 3110973 - 3111962 + | aldo/keto reductase YPTS_2803 3112133 - 3112546 + | hypothetical protein TERM 3303 3112582 - 3112572 - T 71 -6.8 -4.16016 | opp_overlap 3112573 TCATCGCTCAATAAA GCCT GTC AGGC GGGTTTTCATGGAAT YPTS_2804 3113868 - 3112639 - | Mn2+/Fe2+ transporter TERM 3304 3113100 - 3113090 - G 83 -8.2 -4.56914 | overlap 3113091 CCATTGAAATGAAAA GCCG CAG CGGC GGTTGCCATCATCGC TERM 3305 3113953 - 3113967 + H 90 -5.8 -5.5112 | ATCAAGCGCATTTGT GATAAT GGA ATTATC TTTTTTGTTAGTAGA YPTS_2805 3114319 - 3115503 + | nucleoside transporter TERM 3306 3115621 - 3115647 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 3115610, overlap 3115616 3115622 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3307 3115622 - 3115648 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 3115610, overlap 3115616 3115621 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3308 3115712 - 3115725 + F 84 -3.7 -5.4492 | TGTCAGCAGTCTGGA GGCGC TACG GCACC TTTTTTGTATCTATA YPTS_2806 3117162 - 3118577 + | glutamyl-tRNA synthetase TERM 3309 3118602 - 3118620 + F 100 -12.4 -5.5762 | TTTTCCGTGTTATCA GGCGGCCA CTC TGGTCGCC TTTTTTATATTTGAT TERM 3310 3119043 - 3119071 + F 100 -14.7 -2.74144 | opp_overlap 3119048 3119050, overlap 3119050 AGCTCCACCACCCTT TAAAAGACCGGCC TTT GGCCGGTTTTTTG CTTTACAGCTCCGAC TERM 3311 3119066 - 3119048 - f 91 -10.2 -4.10161 | opp_overlap 3119043 3119050, overlap 3119050 CACCACCCTTTAAAA GACCGGCC TTT GGCCGGTT TTTTGCTTTACAGCT TERM 3312 3119064 - 3119050 - f 100 -12.8 -3.64716 | opp_overlap 3119050 3119043, overlap 3119048 CCACCCTTTAAAAGA CCGGCC TTT GGCCGG TTTTTTGCTTTACAG TERM 3313 3119050 - 3119064 + F 100 -12.8 -5.37593 | opp_overlap 3119048 3119050, overlap 3119043 CCACCCTTTAAAAGA CCGGCC TTT GGCCGG TTTTTTGCTTTACAG TERM 3314 3119328 - 3119339 + G 72 -5.8 -4.44245 | opp_overlap 3119319, overlap 3119326 3119325 ATTAAACCAGTGGTG CCTG GCGG CAGG TTTTGTCCGTAATCT YPTS_2808 3119230 - 3119835 + | hypothetical protein TERM 3315 3120155 - 3120144 - g 70 -2.2 -4.99861 | GAGGAATTACAAAAA CAGC AGCA ACTG ATTGAGACCCAAATT YPTS_2809 3119967 - 3120314 + | hypothetical protein YPTS_2810 3120630 - 3120415 - | hypothetical protein YPTS_2811 3122662 - 3120650 - | DNA ligase, NAD-dependent TERM 3316 3121878 - 3121860 - G 70 -2.4 -4.91511 | opp_overlap 3121873 ATTTGACGATAAAAA GCAATAAC CTG ATCACTGC CAGTGCAGAGTTTCA TERM 3317 3122702 - 3122686 - R 100 -10.8 -5.5762 | opp_overlap 3122681 ACCAAAGATAAAAAA CCCCCG GCATG CGGGGG TTCGGGTTAATTCGA YPTS_2812 3123739 - 3122753 - | cell division protein ZipA TERM 3318 3123253 - 3123265 + g 71 -4.8 -4.59773 | overlap 3123243 GCTGTTGTGGAGCCA CCTG ATGTG CAGG TTTTTCCACATGCGG YPTS_2813 3123988 - 3124722 + | hypothetical protein TERM 3319 3124734 - 3124752 + F 100 -14.6 -3.97139 | ATGATCATTTTCGGT GGGCGTGT CTA ACACGCCC TTGTTATTGGGATTA TERM 3320 3125088 - 3125070 - g 91 -13.2 -3.41073 | overlap 3125068 GACCGCAGGCAAAGA GCTGGTTG AAC CAACCAGC GGGAATACAGGTGTT YPTS_2814 3124879 - 3125847 + | cysteine synthase A TERM 3321 3125902 - 3125867 - f 100 -12 -3.74693 | opp_overlap 3125877, overlap 3125877 GGCTACCGCACTAAA TGCAAAAAAAGCACCC TTTG GGGTGCTTTTTTTGTG GAGTACATCAAAGTT TERM 3322 3125877 - 3125892 + F 100 -10.4 -5.626 | opp_overlap 3125867 3125877 CTAAATGCAAAAAAA GCACCC TTTG GGGTGC TTTTTTTGTGGAGTA TERM 3323 3125892 - 3125877 - f 100 -10.4 -5.58209 | opp_overlap 3125877, overlap 3125867 CTAAATGCAAAAAAA GCACCC TTTG GGGTGC TTTTTTTGTGGAGTA YPTS_2815 3126346 - 3126603 + | phosphotransferase system, phosphocarrier protein HPr TERM 3324 3127718 - 3127707 - g 81 -5.8 -5.00196 | GCCGAAAGAAGAAAA CCCA TTCC TGGG CTGGCGTGCTATTCG TERM 3325 3127979 - 3128000 + G 72 -10.3 -3.01712 | opp_overlap 3127984, overlap 3127984 TCGCTCGCCATTTAG CTAAAGAAG TTGA CTTCTTTAG TATTGGGACAAACGA YPTS_2816 3126652 - 3128379 + | phosphoenolpyruvate-protein phosphotransferase TERM 3326 3128510 - 3128476 - g 79 -3.5 -5.34555 | opp_overlap 3128478 TCAGATGATAAAAAA GACAGCAGTGTTATT GAGAT AGTTGCACCGCTGTC TGGTGAAATCGTCAA YPTS_2817 3128428 - 3128937 + | PTS system, glucose subfamily, IIA subunit TERM 3327 3128978 - 3128995 + T 100 -10.5 -4.25104 | opp_overlap 3128978 GATACCGATAAAAAA CGGCGCT CAAG GGCGCCG TTTTGCTGCCGGCCA TERM 3328 3128995 - 3128978 - T 100 -9.8 -5.29782 | opp_overlap 3128978 GATACCGATAAAAAA CGGCGC TCAAGG GCGCCG TTTTGCTGCCGGCCA YPTS_2818 3130523 - 3129174 - | integral membrane sensor signal transduction histidine kinase TERM 3329 3130240 - 3130286 + g 100 -10.3 -5.27923 | opp_overlap 3130240 3130275 3130277, overlap 3130242 GAGAGAGCCGATATA TCTTTTTCTGCCGTATCTGCC ATCTC GGCAGGTAAGACAGAAAAATA TTTTTTGTCCGCTTC TERM 3330 3130286 - 3130240 - G 74 -11 -2.91239 | opp_overlap 3130240 3130242, overlap 3130275 3130277 GAGAGAGCCGATATA TCTTTTTCTGCCGTATCTGCCA TCT CGGCAGGTAAGACAGAAAAATA TTTTTTGTCCGCTTC TERM 3331 3130242 - 3130284 + g 100 -12.9 -4.26475 | opp_overlap 3130240 3130275 3130277, overlap 3130240 GAGAGCCGATATATC TTTTTCTGCCGTATCTGCC ATCTC GGCAGGTAAGACAGAAAAA TATTTTTTGTCCGCT YPTS_2819 3131232 - 3130549 - | two component transcriptional regulator TERM 3332 3130990 - 3131024 + g 80 -2.7 -5.41746 | CCGATCAATATTGTC GCCTTTAGCCGTTAA CATAA TGATCGGCAAACGGC TTTTTTTACGCACTT YPTS_2820 3131420 - 3132625 + | RND family efflux transporter MFP subunit YPTS_2821 3132629 - 3134665 + | ABC transporter related TERM 3333 3134709 - 3134722 + T 86 -6.7 -4.9645 | GCTTTCATCGTGATA GGTCA TCCG TGACC TTTTATTGTTATCAT TERM 3334 3134887 - 3134900 + T 74 -4.5 -4.83615 | AACGCGAATTATTTT GGGTA TAGA TGCCC TTTTTATACAAAATA YPTS_2822 3136566 - 3134920 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 3335 3135666 - 3135638 - G 74 -11 -2.81584 | gap 1, opp_overlap 3135656, overlap 3135637 ATATCAGCCAATAAT CT-GCCTTGCCGG TTAG CCGGCCAGGCCAG TGGAATATACGTTGC YPTS_2823 3138086 - 3136626 - | Na+/solute symporter TERM 3336 3137900 - 3137868 - G 71 -9.1 -3.50393 | overlap 3137870 GGTGAGCGTATATAA TATGGCTGGGCCTTT TCC ATAAGCCCAGCCACT GCCCCCCAAGAATGT TERM 3337 3137898 - 3137870 - G 93 -13.9 -3.32698 | overlap 3137868 TGAGCGTATATAATA TGGCTGGGCCTTT TCC ATAAGCCCAGCCA CTGCCCCCCAAGAAT YPTS_2824 3138280 - 3138083 - | hypothetical protein YPTS_2825 3139643 - 3138423 - | peptidase M24 YPTS_2826 3140858 - 3139677 - | aminotransferase class I and II YPTS_2827 3141558 - 3142976 + | von Willebrand factor type A TERM 3338 3143073 - 3143099 + F 72 -10.1 -2.88849 | gap 1, overlap 3143068 3143074 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3339 3143074 - 3143100 + F 84 -10.1 -3.82218 | gap 1, overlap 3143068 3143073 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3340 3143178 - 3143203 + F 93 -11.9 -3.66378 | overlap 3143179 ATAAAAGTTCATTTA TGCTGAGTCAG TACG CTGGCTCAGCG TTTACATGGGATATG TERM 3341 3143179 - 3143202 + F 91 -13.2 -2.79505 | overlap 3143178 TAAAAGTTCATTTAT GCTGAGTCAG TACG CTGGCTCAGC GTTTACATGGGATAT YPTS_2828 3143221 - 3144765 + | integral membrane sensor signal transduction histidine kinase YPTS_2829 3144762 - 3145469 + | two component transcriptional regulator YPTS_2830 3147082 - 3145850 - | hypothetical protein YPTS_2831 3148207 - 3147314 - | cysteine synthase B YPTS_2832 3149469 - 3148378 - | sulfate ABC transporter, ATPase subunit TERM 3342 3148788 - 3148778 - G 73 -2.4 -5.10163 | AATTCCAAAACAAAA CGGG TTG CCGG TTCACGCCAGACTTC YPTS_2833 3150334 - 3149459 - | sulfate ABC transporter, inner membrane subunit CysW TERM 3343 3150103 - 3150091 - G 71 -4.8 -4.63527 | GCACCACCCCAAAAA CCAG GTTCA CTGG CACGGTTATCAATGC YPTS_2834 3151167 - 3150334 - | sulfate ABC transporter, inner membrane subunit YPTS_2835 3152204 - 3151167 - | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 3344 3152471 - 3152450 - R 100 -12.3 -6.32017 | gap 1 AACAAATAAAAAAAA GCCCGGT-CG TCG CGCACCGGGC AAGAAAAACAGTTTA YPTS_2836 3154069 - 3152537 - | major facilitator transporter TERM 3345 3153866 - 3153850 - G 73 -8 -3.99405 | TGAAGGCAGCAGAAA TCAGGC TGGTC GCCTGA ATCAGTGTCAGGCCA TERM 3346 3154254 - 3154242 - R 76 -7.7 -4.22375 | opp_overlap 3154241 3154242 ATAGCATTTAATAAA GGAGT AAA ACTCC ATTTGAGTGTATAAG YPTS_2837 3155552 - 3154674 - | RpiR family transcriptional regulator TERM 3347 3155130 - 3155114 - G 73 -3.7 -4.88228 | overlap 3155116 3155120 AGCCAACACCAAAAA TACAGAT GCG ATCCGCA GGGCGCAGCAATTTG TERM 3348 3155689 - 3155676 - R 100 -9.5 -5.85737 | AGATCAATAAAAAAA CCCGG AAAA CCGGG TAAAAAGGTCAAAAA YPTS_2838 3156211 - 3155741 - | hypothetical protein YPTS_2839 3157165 - 3156293 - | ROK family protein TERM 3349 3157261 - 3157273 + H 70 -7.7 -3.59627 | overlap 3157271 3157271 TGTTATTTTTAATTT GGAGT TAA ACTCC TTTGAGGGATTTGGT YPTS_2840 3157433 - 3158572 + | hypothetical protein TERM 3350 3158622 - 3158578 - T 81 -10.8 -3.25361 | gap 1, overlap 3158580 AAATTTATAAGTTAA CACCCTGTCCCCCATCAGCGA TAAC TCAGTGGTG-GGGACAGGGTA ACCTATAGCCAGACT TERM 3351 3158620 - 3158580 - T 79 -11.2 -3.18321 | gap 1, overlap 3158578 ATTTATAAGTTAACA CCCTGTCCCCCATCAGCGA TAAC TCAGTGGTG-GGGACAGGG TAACCTATAGCCAGA YPTS_2841 3158751 - 3158656 - | hypothetical protein YPTS_2842 3158841 - 3159542 + | putative N-acetylmannosamine-6-phosphate epimerase YPTS_2843 3159605 - 3160498 + | dihydrodipicolinate synthetase TERM 3352 3160558 - 3160536 - T 100 -13.5 -4.18044 | TGATAAATAATGAAA GGCCGGATT TCATC AATCCGGCC AACGGTGATATATTT YPTS_2844 3161495 - 3160596 - | Dyp-type peroxidase family protein TERM 3353 3160642 - 3160652 + g 71 -8.2 -3.72576 | GCAAAATAATAGCTG CCGG TAA CCGG TTTGCTAAAACGCAG TERM 3354 3161584 - 3161561 - R 74 -6.8 -4.39386 | CTGAAACGATTAAAA TTACCTTGCG ACAA CGCAAAATAA AGCGGGAAGAGAGAG TERM 3355 3161642 - 3161626 - R 76 -9.4 -3.4758 | TAGGAATAATATTAA GGCGCT GAGGT AGCGCC CAAGTGATAATAGCA YPTS_2845 3162284 - 3161673 - | hypothetical protein YPTS_2846 3162647 - 3163060 + | hypothetical protein TERM 3356 3164948 - 3164923 - g 71 -4 -4.6821 | gap 1, opp_overlap 3164926 3164932 AACCTGAAGAGAAAA CAACCCCGTCA ACGGA TG-CGGTGTTG AGTATGGCCTCATCC TERM 3357 3165259 - 3165271 + G 76 -9.1 -3.96216 | ATAGTTATAGCTTGG GTGCC TAC GGCAC TTATTTCGATAACAG YPTS_2847 3163560 - 3165839 + | outer membrane autotransporter TERM 3358 3165857 - 3165884 + T 100 -14.2 -5.53991 | opp_overlap 3165856 AACATACCAGATGAG TGGTTTCCCGCG ATAA TGCGGGAGACCA TTTTTTTGCTCAATA YPTS_2848 3166347 - 3165931 - | hypothetical protein YPTS_2849 3166961 - 3166818 - | putative acetyltransferase TERM 3359 3166990 - 3167002 + r 70 -7.7 -3.64599 | opp_overlap 3166990 3166986 CGGCTGATCAATGCA TTGGC AAA GCCAA TTTAAGCTCTGGTGC YPTS_2850 3167870 - 3167145 - | hypothetical protein YPTS_2851 3168580 - 3167873 - | hypothetical protein YPTS_2852 3169248 - 3168577 - | hypothetical protein YPTS_2853 3169330 - 3169578 + | hypothetical protein YPTS_2854 3169557 - 3169739 + | IS630 orf YPTS_2855 3170684 - 3170259 - | GCN5-related N-acetyltransferase TERM 3360 3171407 - 3171389 - g 74 -8.9 -3.61715 | TACGGCTTTGAAGAA GATGCCA TTCAT TGGCATC AGGTAGCGCATAGCC TERM 3361 3171500 - 3171526 + G 74 -2.8 -5.04385 | overlap 3171499 TATATTAAACATCGC CAGGAAGCCCGT GGT ATTGGCGGCCTG TTTTTTGACGATCTG TERM 3362 3171822 - 3171802 - g 76 -9.7 -3.65812 | GCGCTGGGAATATAA CTATCAGCC AGA GGCAGATAG TGCAGAAGCCGCGTT YPTS_2856 3170966 - 3171895 + | coproporphyrinogen III oxidase TERM 3363 3172111 - 3172098 - g 87 -5.3 -5.40072 | GCGGGTGGAAAAAAA TGATC TGGT GATCA CCGCAGATATCCCAC YPTS_2857 3171895 - 3172353 + | hypothetical protein YPTS_2858 3172546 - 3172406 - | hypothetical protein YPTS_2859 3174937 - 3172658 - | phosphate acetyl/butaryl transferase TERM 3364 3174079 - 3174111 + g 71 -7 -4.13728 | gap 1, opp_overlap 3174092, overlap 3174109 CCGGTTCCGGGTTTG CCAGGGC-CAGAATC AACG GATTCGGTGCCATGG TTTTCACCATCTCTG TERM 3365 3174839 - 3174856 + g 76 -9.1 -3.90112 | opp_overlap 3174837 3174838, overlap 3174855 CGCCAGAGCCAAATC CCGTTGG GTCG CCAGCGG TTTGGTTGGCGAAAC YPTS_2860 3175852 - 3175256 - | NUDIX hydrolase YPTS_2861 3175970 - 3175836 - | hypothetical protein TERM 3366 3175962 - 3175934 - G 100 -12.4 -4.72272 | opp_overlap 3175934 CTGCTGCAGTAAAAA CGCCCTGCCGAC GAAAA GTCCACAGGGCG TTAATCATCACTCTC TERM 3367 3175934 - 3175962 + g 73 -10.2 -3.22774 | opp_overlap 3175934 CTGCTGCAGTAAAAA CGCCCTGCCGAC GAAAA GTCCACAGGGCG TTAATCATCACTCTC YPTS_2862 3176634 - 3176035 - | NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome TERM 3368 3176686 - 3176674 - R 78 -9.1 -3.76224 | CGGTTACTGACCAAA GCCAG GTG CTGGC TGGAAGCTATTACCA YPTS_2863 3177129 - 3176662 - | nitrate reductase cytochrome c-type subunit (NapB) TERM 3369 3176917 - 3176949 + g 79 -2 -5.38549 | overlap 3176888 3176918 GCTATGTGGGATCAT CGG-TGGCTGGTTAAC ATA GTTCAGC-GCCATCCG TTTTTGTTGTTTAGG YPTS_2864 3179704 - 3177212 - | periplasmic nitrate reductase, large subunit TERM 3370 3178668 - 3178683 + g 85 -5.4 -5.26918 | gap 1 TGATCTTCTGGTACA CCGCTCA TTT TG-GCGG TTTTTTCTAACGTGT YPTS_2865 3179967 - 3179701 - | NapD family protein YPTS_2866 3180460 - 3179957 - | ferredoxin-type protein NapF TERM 3371 3180256 - 3180245 - G 72 -5.8 -4.38154 | overlap 3180210 ACAGGCCTGACAAAA GCTG CACT CAGC ACGTTGAAAATCTAT TERM 3372 3180759 - 3180792 + H 73 -2.6 -5.11613 | opp_overlap 3180762, overlap 3180790 TTCATTTAACGGGAA TAATTACCAAAACA AGACGA TGCTTTGATAATTA TTTTTTAGATAATCT TERM 3373 3181127 - 3181092 - H 80 -9 -3.9578 | ACATACGCTAAATAA TTCGAGTGGCAGGAAG ACAG CCCCCTGCAACTTGAA GTATGACGGGTATAA YPTS_2867 3181300 - 3181929 + | two component LuxR family transcriptional regulator TERM 3374 3181944 - 3181924 - T 86 -2.6 -5.79595 | opp_overlap 3181924 3181927, overlap 3181927 TTGGAAAATAAAAAA TACTGACA TCCGT TGTCACTA TTTAATGGCCGCTAA YPTS_2868 3182220 - 3181942 - | hypothetical protein TERM 3375 3183376 - 3183361 - g 71 -9 -3.5511 | overlap 3183359 TCCCAGCTACAAACA CCCGAA GAGT TTCGGG AAATTACGCTACGGG TERM 3376 3184708 - 3184684 - g 74 -10.7 -2.77182 | opp_overlap 3184683, overlap 3184681 3184686 TTCGATATGGAATTA CAGGACCATGG CGG CCATGGCCATG ATAAATTGATGGCCG YPTS_2869 3182635 - 3185766 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 3377 3185826 - 3185851 + F 76 -7.6 -4.20783 | AGTCGGTTCTCCCCT GCGGCATG ACGAAAAAAC CATGCCGC TTTATTGCATCAGAT YPTS_2870 3185997 - 3186581 + | hypothetical protein TERM 3378 3186632 - 3186651 + F 74 -7.8 -4.01564 | overlap 3186633 3186635 CGCGCAATACTCACC CTAGGGCG TCCC CGCCCTAC TTTCTGGCTATTTTA TERM 3379 3186633 - 3186650 + F 83 -11.3 -2.99854 | overlap 3186632 3186635 GCGCAATACTCACCC TAGGGCG TCCC CGCCCTA CTTTCTGGCTATTTT TERM 3380 3186635 - 3186648 + F 71 -9.5 -3.0386 | overlap 3186633 3186632 GCAATACTCACCCTA GGGCG TCCC CGCCC TACTTTCTGGCTATT YPTS_2871 3186870 - 3187418 + | membrane-bound metal-dependent hydrolase TERM 3381 3187584 - 3187606 + T 79 -6.9 -4.58283 | opp_overlap 3187584 GCGGGTAATAAAAAA GGCAGTGCC TCTAC GGTTCTGCC TTTTTGCGAGGATTC TERM 3382 3187606 - 3187584 - T 87 -4.7 -5.4505 | opp_overlap 3187584 GCGGGTAATAAAAAA GGCAGTGCC TCTAC GGTTCTGCC TTTTTGCGAGGATTC YPTS_2872 3189340 - 3188165 - | radical SAM domain-containing protein TERM 3383 3188330 - 3188316 - G 71 -5 -4.57073 | overlap 3188318 TACCCTGCGCAAAAA TAGGAT TTC ATCCCA TCGCTGTCCTGATCA TERM 3384 3188950 - 3188977 + g 71 -9.2 -3.54543 | opp_overlap 3188952 ATCCTTTGCCTGAAC GAGTCACACGGT AGCG ATCGTGTAACTC TTTAGGGCCATCAAT TERM 3385 3189389 - 3189364 - R 73 -9.7 -3.05993 | opp_overlap 3189364 3189386 3189387, overlap 3189366 TCATGGAGATAGACA GACGGCAAGAA AAAA TACTTGCCGCC TTTGGGGCTTAATTC YPTS_2873 3191071 - 3189398 - | sulfatase TERM 3386 3190404 - 3190429 + g 70 -9.7 -3.16881 | opp_overlap 3190403 3190401 3190404 TAACCCATAAAATAC TGGAAGCCTCG GTTT TGAGGCTGCCA TTCATCGGCTGAGTA TERM 3387 3191325 - 3191314 - R 71 -2.2 -5.10497 | AAGCCACTGAAAAAA CACA ATGA TGCG ATATTAAACGGTGAG YPTS_2874 3192619 - 3191549 - | ABC transporter related YPTS_2875 3194381 - 3192612 - | binding-protein-dependent transport systems inner membrane component TERM 3388 3194234 - 3194220 - G 73 -2.1 -5.1471 | ATCAGAAAAAATAAA CCTGA ACGCA TCAAG ACTCAGTACCTTTGA TERM 3389 3194464 - 3194433 - R 81 -9.4 -3.75517 | gap 1, overlap 3194434 AGCCGATAAAACCAA GGACTGCGCATGCCC ATA AGGCAAGCGCA-CCC AGATAAAGCCACTAT TERM 3390 3194464 - 3194434 - R 70 -9.6 -2.84587 | overlap 3194433 GCCGATAAAACCAAG GACTGCGCATGCCC ATA AGGCAAGCGCACCC AGATAAAGCCACTAT YPTS_2876 3195585 - 3194476 - | extracellular solute-binding protein TERM 3391 3194659 - 3194676 + g 73 -7.7 -4.03234 | opp_overlap 3194648 AATATCTGACTGATT GGCCAGA ATAT TTTGGCC TTTCTCTGAGAGCAG TERM 3392 3195144 - 3195160 + g 75 -5.1 -4.74706 | opp_overlap 3195146 CAACGGGTTCGTAAG TAGAGCC GTA GGCTTTG TTTTTCCATATTGCC TERM 3393 3195853 - 3195837 - H 71 -9.5 -2.96184 | overlap 3195836 3195839 CAGCAAAATCTAAAG CAGCAAA CAG TTTGCTG ATAAGCCACGGTGTG YPTS_2877 3195875 - 3196348 + | TPR repeat-containing protein YPTS_2878 3196508 - 3196906 + | arsenate reductase and related TERM 3394 3197274 - 3197285 + G 71 -7.2 -3.9712 | opp_overlap 3197274 CACCCTGACCACAAA GGCC GCCT GGCC TTTATGATAACCTCC TERM 3395 3197285 - 3197274 - g 71 -7.2 -3.96624 | opp_overlap 3197274 CACCCTGACCACAAA GGCC GCCT GGCC TTTATGATAACCTCC YPTS_2879 3196908 - 3198035 + | succinyl-diaminopimelate desuccinylase TERM 3396 3198111 - 3198135 + G 73 -7.9 -4.08767 | gap 1 TAAGTGGCGCTCATC GCCTACAGCC ACAGGC GGCTG-AGGC TTTTCAAGCAATGCA YPTS_2880 3198032 - 3198709 + | peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YPTS_2881 3198777 - 3198971 + | hypothetical protein YPTS_2882 3199138 - 3199013 - | hypothetical protein YPTS_2883 3201276 - 3199225 - | protein of unknown function DUF699 ATPase putative TERM 3397 3199903 - 3199929 + g 78 -10.8 -3.29043 | overlap 3199904 3199906 CAGCGTTGGTGCCTG CCACTGCCCGCT ATG AGCGGCCAGTGA TTGTGCCACCAGATT TERM 3398 3199904 - 3199928 + g 87 -14.3 -2.57211 | overlap 3199903 3199906 AGCGTTGGTGCCTGC CACTGCCCGCT ATG AGCGGCCAGTG ATTGTGCCACCAGAT TERM 3399 3199906 - 3199926 + g 74 -11.1 -2.82623 | overlap 3199904 3199903 CGTTGGTGCCTGCCA CTGCCCGCT ATG AGCGGCCAG TGATTGTGCCACCAG TERM 3400 3200387 - 3200375 - G 75 -3.3 -5.16237 | overlap 3200376 AATTTCAGTAAAAAA CCACG CCC CGTGC CCTCATATCCCTGTA YPTS_2884 3201730 - 3201278 - | hypothetical protein YPTS_2885 3202693 - 3201824 - | protein of unknown function zinc metallopeptidase putative TERM 3401 3202308 - 3202295 - G 75 -5.9 -4.63218 | TGCCGGGCAATAAAA CGGCC CCAT GACCG ACTGACCGGTACCAC YPTS_2886 3202739 - 3202915 + | hypothetical protein YPTS_2887 3203625 - 3202912 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 3402 3203670 - 3203693 + r 100 -13.2 -5.18371 | opp_overlap 3203670 3203675 GTCGTCATGAAATAA CTAAAGGGGC CGAA GCCCCTTTGG TTTTATTTTATCGCG TERM 3403 3203693 - 3203670 - R 90 -11 -4.00042 | opp_overlap 3203670, overlap 3203675 GTCGTCATGAAATAA CTAAAGGGGC CGAA GCCCCTTTGG TTTTATTTTATCGCG TERM 3404 3203688 - 3203675 - R 85 -9.5 -4.16371 | opp_overlap 3203670, overlap 3203670 CATGAAATAACTAAA GGGGC CGAA GCCCC TTTGGTTTTATTTTA YPTS_2888 3204754 - 3203696 - | NlpB/DapX family lipoprotein TERM 3405 3204085 - 3204118 + g 85 -10.9 -3.86822 | GCGTACCGACTTTAC GTGAGGCCTGACTGC TCTC GCTGTCAGCCCGCAC TTTATCCAAACCTTC YPTS_2889 3205671 - 3204772 - | dihydrodipicolinate synthase TERM 3406 3205753 - 3205764 + H 93 -2.2 -6.15717 | ACTGTGTTGTAAGCG CTTG GCAG CAGG TTTTTTTTATGTTTA TERM 3407 3205950 - 3205964 + G 74 -6.4 -4.36554 | CGGCTGGCTATGTTC GGTGAG GAG TTCACC TTTATTATGCTGCTA YPTS_2890 3205773 - 3206387 + | glycine cleavage system transcriptional repressor YPTS_2891 3206390 - 3206860 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 3408 3206917 - 3206902 - T 100 -10.4 -4.34711 | opp_overlap 3206904 AAAATTAACGGAAAA GAGCGC TCTG GCGCTC TTGAGGTTATTGACA YPTS_2892 3207523 - 3207104 - | hypothetical protein YPTS_2893 3208222 - 3207527 - | hypothetical protein YPTS_2894 3209886 - 3208822 - | hypothetical protein TERM 3409 3209313 - 3209300 - G 74 -9.5 -3.53091 | ACCTGCCCGGCCAAA CCGCG GTTA CGCGG CAAAACACGGCGCAC TERM 3410 3209691 - 3209670 - G 71 -8.7 -3.63897 | overlap 3209668 CAAATAGCACAAATA CGATACTGG CCGC CCAGGATCG TGAACAACCAATACG YPTS_2895 3210127 - 3211701 + | peptidase M48 Ste24p YPTS_2896 3211808 - 3212164 + | arsenate reductase YPTS_2897 3213083 - 3212376 - | DnaA regulatory inactivator Hda TERM 3411 3213198 - 3213168 - R 100 -11.2 -4.58283 | opp_overlap 3213168 3213166 3213164 3213169, overlap 3213169 GAATTTGGTGAAAAA TGGGCTGAACTG GCAACCG CAGTTCAGCCCT ATCTGGTTTTTATAC TERM 3412 3213168 - 3213199 + r 72 -9.6 -3.22077 | gap 1, opp_overlap 3213168 3213169, overlap 3213166 3213164 3213169 GAATTTGGTGAAAAA T-GGGCTGAACTG GCAACCG CAGTTCAGCCCTA TCTGGTTTTTATACG TERM 3413 3213169 - 3213197 + r 100 -14.7 -3.16187 | opp_overlap 3213169 3213168, overlap 3213168 3213166 3213164 AATTTGGTGAAAAAT GGGCTGAACTG GCAACCG CAGTTCAGCCC TATCTGGTTTTTATA TERM 3414 3213197 - 3213169 - R 100 -14.7 -3.34488 | opp_overlap 3213168 3213166 3213164 3213169, overlap 3213168 AATTTGGTGAAAAAT GGGCTGAACTG GCAACCG CAGTTCAGCCC TATCTGGTTTTTATA YPTS_2898 3214628 - 3213342 - | uracil-xanthine permease TERM 3415 3214288 - 3214298 + g 79 -2.4 -5.44119 | ATGACATCCAGCCAC CCGG TCC CCGC TTTTTTTACAATCAG TERM 3416 3214731 - 3214714 - R 100 -8.4 -6.11019 | opp_overlap 3214714 AAAAATCAAAAAAAA GCCGAC TTTCAC GTCGGC TATCATCGTTATTTA YPTS_2899 3215366 - 3214740 - | uracil phosphoribosyltransferase YPTS_2900 3215801 - 3216844 + | phosphoribosylformylglycinamidine cyclo-ligase TERM 3417 3217146 - 3217158 + G 78 -7.7 -4.36262 | ATGCCAAGGCTTTTA CTGAC CGC GTCAG TTTTGATCTGGCTCT YPTS_2901 3216959 - 3217597 + | phosphoribosylglycinamide formyltransferase YPTS_2902 3217826 - 3218371 + | GCN5-related N-acetyltransferase TERM 3418 3218376 - 3218395 + T 88 -10 -4.20768 | AAAATGCTTAATACG TTGGGGTC AGAT GGCCCCAA TTGTTTCTTCCCCGT YPTS_2903 3219658 - 3218465 - | hypothetical protein TERM 3419 3218799 - 3218789 - G 73 -2.4 -5.06414 | opp_overlap 3218795 3218797 GTGCTGTAAGAAAAA GGGC CAT GCCT GTTGAGACCAGGTAT TERM 3420 3218932 - 3218922 - G 74 -6.8 -4.37658 | AATTGTGTCATAAAA TGCC CCA GGCA AGCCAATAACACCTT YPTS_2904 3220684 - 3219872 - | phosphate ABC transporter, ATPase subunit YPTS_2905 3222424 - 3220712 - | phosphate ABC transporter, inner membrane subunit PstA YPTS_2906 3224655 - 3222424 - | binding-protein-dependent transport systems inner membrane component TERM 3421 3223715 - 3223725 + g 76 -8.2 -4.09685 | opp_overlap 3223714 GTCAAATGGAACGAT GGGC TTG GCCC TTTTCGCACATCAAA YPTS_2907 3224926 - 3226989 + | polyphosphate kinase TERM 3422 3228067 - 3228055 - g 74 -6.3 -4.36914 | overlap 3228061 GTGGTTGGCACAAAA TACCA AGC TGGTA CAGCCCCAACTGGAA YPTS_2908 3227000 - 3228559 + | Ppx/GppA phosphatase TERM 3423 3228612 - 3228576 - f 79 -8 -4.38712 | gap 1, opp_overlap 3228579, overlap 3228578 CTGACGCTGATAAAA TCG-TGCACCGGGTGGT TGTC ATCACCCGGTGCGTCAA TTGACAGCATGAGCG TERM 3424 3228579 - 3228608 + F 100 -16.5 -2.52676 | opp_overlap 3228578 3228576 ACGCTGATAAAATCG TGCACCGGGTGGT TGTC ATCACCCGGTGCG TCAATTGACAGCATG YPTS_2909 3228748 - 3228936 + | hypothetical protein YPTS_2910 3228988 - 3230463 + | magnesium transporter YPTS_2911 3230603 - 3231955 + | putative chaperone protein TERM 3425 3231972 - 3231999 + T 100 -9.9 -5.09204 | overlap 3231968 CCCTATTATGTTCAC CTCTCAGTGAG TTATCT CGCACTGAGAG TTTTTGTTGGCGTAT YPTS_2912 3232154 - 3232014 - | hypothetical protein YPTS_2913 3233075 - 3232227 - | binding-protein-dependent transport systems inner membrane component YPTS_2914 3234402 - 3233137 - | binding-protein-dependent transport systems inner membrane component TERM 3426 3233979 - 3234000 + g 85 -11.6 -3.70149 | TGATTAGCGCTTCAC GTACCGGC CCTTCA GCCGGTAC TTTCCGTAGTGTCGA YPTS_2915 3235477 - 3234449 - | extracellular solute-binding protein TERM 3427 3234550 - 3234528 - G 73 -7.6 -4.13767 | TTGTTCATGGGAAAA GCCTCAGCCA GGT TGGCTGGCGC AGTGGGTAAATTAGC YPTS_2916 3236819 - 3235530 - | 4-aminobutyrate aminotransferase TERM 3428 3236776 - 3236786 + g 71 -4.6 -4.50943 | opp_overlap 3236765 ACACCAATCCCACGT GGGG TCG CCTC TTTTCTGCGTTGTTC TERM 3429 3237694 - 3237682 - g 74 -9.1 -3.67597 | GCCTGGATTGAAGAA CCCAG CTA CTGGG GGATCCGCAACGTGT TERM 3430 3238029 - 3238016 - g 75 -8.1 -4.26076 | GTACCTTCAGTAAAA CCCTG TATC CAGGG ATGCGTATCAGCTAC TERM 3431 3238284 - 3238304 + G 70 -9.7 -3.14602 | overlap 3238283 CGCGGGGCTGCACCT GATTCTGGC CTT GCCGGAGTC TATTGATGACGTGGC TERM 3432 3238402 - 3238385 - g 75 -5.5 -4.68593 | gap 1, opp_overlap 3238386 3238387, overlap 3238386 3238387 GCTATTACTTAAAAA GTCCCCCG CGA CGAGGG-C TGTTACTCGGTTATG YPTS_2917 3237001 - 3238506 + | transcriptional regulator YPTS_2918 3238889 - 3239974 + | spermidine/putrescine ABC transporter ATPase subunit TERM 3433 3240386 - 3240375 - f 75 -2.2 -5.31877 | gap 1, overlap 3240376 AGCCACGATAAAAAA GGACG CTT CG-CC ATCATGAAATCTCAA YPTS_2919 3240390 - 3241724 + | RND family efflux transporter MFP subunit TERM 3434 3241756 - 3241766 + G 71 -8.2 -3.75817 | overlap 3241747 3241743 AACACCCGGTGGCGG GCCG TCA CGGC TGTTTATTCTGCGCC TERM 3435 3242577 - 3242561 - g 78 -5.8 -4.67697 | overlap 3242562 GCGGAAAATAACAAA CTGGCC GCCTG GGCCAA TACTCAATCAGCAAT TERM 3436 3243345 - 3243380 + G 78 -9 -3.97042 | CGTGGCTGACCCTAA GTGTCGCGTTCAGCAC ACTG GTGCTGACGGTGATAC TTTACTTGCTGATCC YPTS_2920 3241724 - 3244882 + | acriflavin resistance protein YPTS_2921 3244879 - 3247953 + | acriflavin resistance protein TERM 3437 3248410 - 3248451 + G 100 -10.8 -4.75404 | gap 1 GCGTTTGTCACACTG CCCGGCCAG-ATTGGGCCA TTAGT TGGCCCGGCGCTGGGCGGG TTTTTAGTGGAATTT TERM 3438 3249044 - 3249063 + G 73 -8.6 -3.9461 | CAATCATGGGTTGGA CACTGCTG ATGC CAGTAGTG TTATTCTTCCAAGGC YPTS_2922 3247987 - 3249384 + | major facilitator transporter TERM 3439 3250419 - 3250407 - g 80 -4.1 -5.18726 | CTTCCAGAACAAAAA GATGA CCA TCACC GCCCACCTGCCTGAA YPTS_2923 3249415 - 3250800 + | integral membrane sensor signal transduction histidine kinase YPTS_2924 3250810 - 3251529 + | two component transcriptional regulator YPTS_2925 3251666 - 3252004 + | hypothetical protein TERM 3440 3252064 - 3252086 + F 79 -7.7 -4.32046 | ACGACCACTTATCCC TGCGCGG GGCCATTAA CCGCGCA TTTCATTTTTGCACG YPTS_2926 3252279 - 3253673 + | peptidase U32 TERM 3441 3253693 - 3253711 + F 85 -6 -5.17353 | opp_overlap 3253693 ATTCAATAAAATGAA TGCCAC AGATAAA GTGGCA TTTTTTAGTAAATAT TERM 3442 3253827 - 3253854 + F 100 -13.5 -5.42198 | AGGAACCACCTCCTT GGCTAGCCCAA TCTCCC TTGGGCTGGCC TTTTCTTTTTTCCCC TERM 3443 3255075 - 3255041 - g 74 -6.5 -4.36508 | gap 1, overlap 3255038 TGAGAAAAATAAGAA TGTTATCGACGCCACG GTAC CTTGGC-TCGATATCA CTGCACCGAACGATA YPTS_2927 3254310 - 3255200 + | diacylglycerol kinase catalytic region TERM 3444 3255424 - 3255384 - T 76 -6.7 -4.56113 | opp_overlap 3255394 3255395, overlap 3255386 AACAGAGTAAATAAA CAGCGGAGCACGGCGAGAA CCG CCCTTGTCTTGCTCCGCCA TTGGCGATTCGGGGC TERM 3445 3255422 - 3255386 - T 81 -9.3 -3.8721 | opp_overlap 3255394 3255395, overlap 3255384 CAGAGTAAATAAACA GCGGAGCACGGCGAGAA CCG CCCTTGTCTTGCTCCGC CATTGGCGATTCGGG TERM 3446 3255477 - 3255454 - T 73 -8.2 -3.61715 | CATTGTTGGCAATAA GTCATCACTC ATAA GAGTCATGAC GTGCAAAACTCAGCG YPTS_2928 3255996 - 3255487 - | inhibitor of vertebrate lysozyme TERM 3447 3256439 - 3256428 - g 83 -7.2 -4.74518 | opp_overlap 3256430 AATTATCAAAACAAA CGCG GTAC CGCG AACGGTTTTGTCATT YPTS_2929 3256227 - 3257147 + | hypothetical protein YPTS_2930 3257975 - 3257175 - | phosphomethylpyrimidine kinase TERM 3448 3257831 - 3257841 + g 74 -6.8 -4.36914 | GATAAACCGACTGCA CACC ACA GGTG TTTTGTGCCACCAGC YPTS_2931 3258064 - 3257972 - | hypothetical protein TERM 3449 3258038 - 3258020 - G 71 -8.9 -3.57561 | GGCTAATGGCGTAAA TTCAGCC GCAGT GGCTGAA AAGAGAACGGCAGGT YPTS_2932 3258497 - 3258964 + | hypothetical protein TERM 3450 3259692 - 3259702 + G 77 -6.8 -4.49377 | GCTAAAATAGCCATT GTCG CGG CGAC TTCTTTTATTGTAGG YPTS_2933 3259023 - 3259943 + | hypothetical protein YPTS_2934 3259940 - 3260335 + | hypothetical protein YPTS_2935 3260399 - 3260794 + | hypothetical protein YPTS_2936 3260856 - 3261251 + | hypothetical protein YPTS_2937 3261451 - 3261263 - | hypothetical protein YPTS_2938 3261480 - 3261713 + | hypothetical protein YPTS_2939 3261737 - 3262216 + | Hcp1 family type VI secretion system effector TERM 3451 3262273 - 3262292 + T 70 -7.8 -3.58343 | opp_overlap 3262273 AAACCATAAAAAAAA CCGCCTAA TATT TAAGGCGG TTTCAGACTGCTGGC TERM 3452 3262292 - 3262273 - T 100 -7.8 -6.04378 | opp_overlap 3262273 AAACCATAAAAAAAA CCGCCTAA TATT TAAGGCGG TTTCAGACTGCTGGC TERM 3453 3262428 - 3262447 + T 84 -6.4 -4.98616 | opp_overlap 3262428 GTCAATAACCTCAAA CCGCCT AATATTCA AGGCGG TTTTTGCTATTTTCA YPTS_2940 3264072 - 3262495 - | GMP synthase, large subunit TERM 3454 3264239 - 3264209 - R 100 -9.9 -5.79595 | opp_overlap 3264209 3264212 3264213 TTTTAAAACAAAAAA TAACCATCTGATG GCCAG CACCAGATGATTA TTTAACTAATTGTTA YPTS_2941 3265715 - 3264252 - | inosine-5'-monophosphate dehydrogenase TERM 3455 3265176 - 3265192 + g 70 -2.2 -5.00616 | overlap 3265178 GACCAACACTTTCTC TACACG TTTTT CGTGCA TTTTTTGCAGCACAA YPTS_2942 3265885 - 3267264 + | exodeoxyribonuclease VII, large subunit YPTS_2943 3267392 - 3267240 - | hypothetical protein YPTS_2944 3267636 - 3267412 - | hypothetical protein YPTS_2945 3268641 - 3267685 - | auxin efflux carrier TERM 3456 3268814 - 3268803 - R 85 -2.2 -5.77988 | ATATAGAGAAAAAAA CCAG GCTA CTGA CAAACCCCGATGACG TERM 3457 3268891 - 3268865 - R 86 -10.1 -3.9749 | gap 1, overlap 3268866 AGGCAGAAGAGTAAA GTGTCCGCGCCA GAGA TGGCGCGG-CTC AAGCTCCCAAGGAAG YPTS_2946 3270497 - 3269010 - | small GTP-binding protein TERM 3458 3270578 - 3270600 + r 100 -10.5 -4.63527 | opp_overlap 3270557 3270578 TTTTTAGAATACAAA CGGCCCCTG AGTCC CAGGAGCCG TTTTTGAGGTACTGG TERM 3459 3270600 - 3270578 - R 100 -13.4 -4.27117 | opp_overlap 3270578, overlap 3270557 TTTTTAGAATACAAA CGGCCCCTGA GTC CCAGGAGCCG TTTTTGAGGTACTGG YPTS_2947 3271826 - 3270645 - | outer membrane assembly lipoprotein YfgL TERM 3460 3270881 - 3270862 - G 71 -6.4 -4.21974 | overlap 3270863 TTACGATGCAATAAA TCGCTTTG ACTC CAAAGCGT TACGCCGCCATCAGA TERM 3461 3270880 - 3270863 - G 70 -9.9 -3.12702 | overlap 3270862 TACGATGCAATAAAT CGCTTTG ACTC CAAAGCG TTACGCCGCCATCAG YPTS_2948 3272473 - 3271838 - | membrane protein YPTS_2949 3273761 - 3272487 - | histidyl-tRNA synthetase YPTS_2950 3275097 - 3273970 - | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase TERM 3462 3274013 - 3274029 + g 74 -9.5 -3.55203 | ACAATCCGGTTATTC GCATCAA GAA TTGATGC TTTGGCACGAATTTT TERM 3463 3274974 - 3274985 + g 72 -5.8 -4.44797 | opp_overlap 3274967, overlap 3274982 GGGCAACAGTGGCAT CCAC ATCC GTGG TTTTGGTATTGGTCA YPTS_2951 3276289 - 3275201 - | XRE family transcriptional regulator YPTS_2952 3277028 - 3276279 - | type IV pilus biogenesis/stability protein PilW YPTS_2953 3278378 - 3277182 - | radical SAM protein TERM 3464 3278513 - 3278474 - R 100 -13.6 -4.11906 | opp_overlap 3278474 3278476, overlap 3278479 AGAATGTATAAATAA TAGAACGCCCCAGCAGAG CTGT CTCTACTGGGGCGTGGCA TTGTACAAATTTTAA TERM 3465 3278474 - 3278513 + r 74 -9.2 -3.36518 | opp_overlap 3278474 3278479, overlap 3278476 AGAATGTATAAATAA TAGAACGCCCCAGCAGAG CTGT CTCTACTGGGGCGTGGCA TTGTACAAATTTTAA TERM 3466 3278476 - 3278512 + r 80 -11.6 -2.61429 | gap 1, opp_overlap 3278474 3278479, overlap 3278474 AATGTATAAATAATA G-AACGCCCCAGCAGAG CTGT CTCTACTGGGGCGTGGC ATTGTACAAATTTTA TERM 3467 3278508 - 3278479 - R 100 -20.1 -3.93744 | opp_overlap 3278476 3278474, overlap 3278474 GTATAAATAATAGAA CGCCCCAGCAGAG CTGT CTCTACTGGGGCG TGGCATTGTACAAAT YPTS_2954 3279068 - 3278640 - | nucleoside diphosphate kinase YPTS_2955 3281815 - 3279395 - | beta and gamma crystallin TERM 3468 3279990 - 3279978 - G 74 -6.3 -4.37092 | ACCGTCTCGATAAAA TGGTA GTC TACCA GTGCCAGTTCATAAC TERM 3469 3280937 - 3280916 - G 74 -3.1 -5.17507 | AAAACGCAATAAAAA TGACAAA TTACTGCT TTTGTCA CTTAAATTAAACAAA TERM 3470 3281321 - 3281331 + g 75 -3.2 -5.12068 | GACTGTAGTTTGCAT TCCT GGA GGGA TTTTTATTGAATATA YPTS_2956 3282531 - 3282851 + | putative autotransporter protein TERM 3471 3283059 - 3283047 - g 74 -2.7 -5.1287 | overlap 3283048 TTTATATTTAAAAAA CGAAA ATG TTTCA TATCAGGCATTCGCT YPTS_2957 3282892 - 3287133 + | outer membrane autotransporter TERM 3472 3287250 - 3287221 - f 74 -4.9 -4.88067 | opp_overlap 3287223, overlap 3287222 3287223 ATTGACTGATAAAAA CCGCAGGGAGC TGCAATTG GCTCCCTGCTT TTTACCTTATTGATT TERM 3473 3287249 - 3287222 - f 71 -8.4 -3.52117 | opp_overlap 3287223, overlap 3287221 3287223 TTGACTGATAAAAAC CGCAGGGAGC TGCAATTG GCTCCCTGCT TTTTACCTTATTGAT TERM 3474 3287248 - 3287223 - f 83 -11.9 -2.70788 | opp_overlap 3287223, overlap 3287222 3287221 TGACTGATAAAAACC GCAGGGAGC TGCAATTG GCTCCCTGC TTTTTACCTTATTGA TERM 3475 3287223 - 3287248 + F 100 -13.3 -4.8143 | opp_overlap 3287223 3287222 3287221 TGACTGATAAAAACC GCAGGGAGCTG CAAT TGGCTCCCTGC TTTTTACCTTATTGA TERM 3476 3287544 - 3287530 - f 93 -2.9 -5.98781 | CACAATGAAAAAAAA TCAAT TTTTT ATTGA AATTAATATCAATCT TERM 3477 3288640 - 3288628 - g 77 -4.1 -5.04249 | TGGCCAAAAAATAAA TAGCA TTG CGCTA ACCAACAGCCTACAA YPTS_2958 3287690 - 3291055 + | outer membrane autotransporter TERM 3478 3291121 - 3291102 - T 81 -10.7 -3.32997 | GTGGCAGAAATGGAA GGGAGCC TCTATT GGCTCCC TGAGGTTATTGACAA TERM 3479 3291199 - 3291225 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3291188, overlap 3291194 3291200 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3480 3291200 - 3291226 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3291188, overlap 3291194 3291199 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3481 3291287 - 3291306 + T 79 -10.7 -3.11281 | overlap 3291286 3291283 GTTTGTCAGCAGTCT GGGAGCC TCTATT GGCTCCC TATCCTTTTAGATAC YPTS_2959 3292278 - 3291325 - | SseB family protein TERM 3482 3291544 - 3291561 + g 85 -7.7 -4.7254 | GCCATCCACTTCCAA CCCAATC AACA GGTTGGG TTTTTCATCAACACT TERM 3483 3291717 - 3291739 + g 93 -13.4 -3.61715 | TGTCTACCACCATTT CAGCGGGTTG CAC CAACCCGCCG TTCTTCAACAGCATC TERM 3484 3292005 - 3291983 - G 71 -8.5 -3.7398 | gap 1, overlap 3291981 TCCCAATGCAAAATA TTCACC-CCG TTAG CGGTGGTGAA ACTCATTTCGCCATC TERM 3485 3292335 - 3292309 - R 78 -10.1 -3.42459 | opp_overlap 3292313 3292333, overlap 3292303 3292313 CATCGAGAAGATGAA CGAAGGGACGC CAAAT GCGCCCCTTTG AGTCTTCTCAATTCA TERM 3486 3292313 - 3292331 + r 70 -7.3 -3.79071 | opp_overlap 3292313 3292309 3292303 GAGAAGATGAACGAA GGGACGC CAAAT GCGCCCC TTTGAGTCTTCTCAA TERM 3487 3292331 - 3292313 - R 76 -9.5 -3.4684 | opp_overlap 3292313, overlap 3292309 3292303 GAGAAGATGAACGAA GGGACGC CAAAT GCGCCCC TTTGAGTCTTCTCAA YPTS_2960 3293655 - 3292357 - | peptidase M17 leucyl aminopeptidase domain-containing protein TERM 3488 3292747 - 3292768 + g 71 -6.5 -4.25104 | opp_overlap 3292762 GCCGGTTAAGGTGGC TGCGTCGAT AATC AACGGCGCA TTTTGCTCGGAGGCA TERM 3489 3293784 - 3293769 - R 100 -8.2 -5.49234 | ATACGCAATAAAAAA GGCCGC TTGC GCGACC CAGTCAGTATTCACT YPTS_2961 3293995 - 3293795 - | FeS assembly protein IscX YPTS_2962 3294360 - 3294025 - | ferredoxin, 2Fe-2S type, ISC system YPTS_2963 3296297 - 3294363 - | Fe-S protein assembly chaperone HscA TERM 3490 3294425 - 3294394 - G 100 -15.2 -3.56568 | overlap 3294385 GAATGACCTGCTAAA GCACGGCGAATGGA AGCG TCCATCCGGCGTGC GGCAAAATCTTGCGT TERM 3491 3294534 - 3294513 - G 91 -13.7 -3.61398 | opp_overlap 3294510 CTGCTGCTGTAATAA CGCGACCGC TTGG GCGATCGCG GCACTTTCTTGCTCA YPTS_2964 3297064 - 3296540 - | co-chaperone Hsc20 YPTS_2965 3297498 - 3297175 - | iron-sulfur cluster assembly protein IscA YPTS_2966 3298154 - 3297768 - | FeS cluster assembly scaffold IscU YPTS_2967 3299414 - 3298185 - | cysteine desulfurase IscS YPTS_2968 3300025 - 3299468 - | BadM/Rrf2 family transcriptional regulator TERM 3492 3299794 - 3299807 + g 71 -3.8 -4.66163 | CTGGGCCGCGTACGC TGGC GACTAA GCCA TTTTTACGTAGGCGT YPTS_2969 3300891 - 3300118 - | RNA methyltransferase YPTS_2970 3301010 - 3301813 + | inositol monophosphatase TERM 3493 3301867 - 3301844 - T 100 -10.3 -4.96848 | opp_overlap 3301844 CGTTTCAGATAAAAA GCCAGTCAG GGTTAG CCGACTGGC TTTTTTTATTGGGAA TERM 3494 3301844 - 3301867 + T 100 -8.9 -5.7946 | gap 1, opp_overlap 3301844 CGTTTCAGATAAAAA GCCAGTCAGG GTTAG CC-GACTGGC TTTTTTTATTGGGAA YPTS_2971 3302934 - 3301912 - | high-affinity nickel-transporter YPTS_2972 3303599 - 3302925 - | hypothetical protein TERM 3495 3303317 - 3303303 - G 73 -10 -3.36073 | overlap 3303301 TATATCGGTGAAATA GTGCTG ACC CAGCAC ATTAGCCATCACTTC TERM 3496 3305013 - 3305040 + G 83 -12.8 -3.03781 | opp_overlap 3305014, overlap 3305010 TATGTTTTGCAATCA ACTGAATCAGCG CCGC CGCTGATTCAGA TATCATTTCCGTTAA TERM 3497 3305039 - 3305014 - g 100 -16.3 -3.33815 | opp_overlap 3305013 3305010 ATGTTTTGCAATCAA CTGAATCAGCG CCGC CGCTGATTCAG ATATCATTTCCGTTA YPTS_2973 3303741 - 3305102 + | transcriptional antiterminator, BglG YPTS_2974 3306256 - 3305099 - | major facilitator transporter TERM 3498 3306571 - 3306587 + r 72 -6.5 -4.3534 | opp_overlap 3306572, overlap 3306572 TGTCAGCAATCTGAA ACCACCA TTA TGGTGGG TTTTCATGGTTAGGA TERM 3499 3306572 - 3306586 + r 74 -10 -3.20722 | opp_overlap 3306572, overlap 3306571 GTCAGCAATCTGAAA CCACCA TTA TGGTGG GTTTTCATGGTTAGG TERM 3500 3306586 - 3306572 - R 80 -10 -3.67976 | opp_overlap 3306572 3306571 GTCAGCAATCTGAAA CCACCA TTA TGGTGG GTTTTCATGGTTAGG YPTS_2975 3307147 - 3306608 - | virulence-related outer membrane protein YPTS_2976 3307265 - 3307140 - | hypothetical protein YPTS_2977 3307486 - 3307265 - | hypothetical protein TERM 3501 3307585 - 3307564 - R 95 -11.5 -3.86202 | CCCGATGAGATCAAA GCCCCGGCC AGGA GGCCAGGAC GGTGACAGCCGCCTT YPTS_2978 3308852 - 3307599 - | glycine hydroxymethyltransferase TERM 3502 3309238 - 3309250 + H 80 -6.3 -4.87626 | overlap 3309247 AGAATTATCCTCATA TTCAC TAT GTGAA TTTTTCATCTTCAGC TERM 3503 3310128 - 3310144 + G 70 -2.1 -4.89966 | opp_overlap 3310111, overlap 3310129 GATATCGTGCGCATC GCACCAC CCC GTGGCGA TTTCTTTTTGGATGT YPTS_2979 3309393 - 3310583 + | globin TERM 3504 3310620 - 3310647 + F 80 -9.9 -3.695 | overlap 3310621 CTACGCACTTAATGC CGCTGATCAGG AAGGTA CCTGATCAGCA TTTCGGCTATTTCAA TERM 3505 3310621 - 3310646 + F 93 -13.4 -2.81218 | overlap 3310620 TACGCACTTAATGCC GCTGATCAGG AAGGTA CCTGATCAGC ATTTCGGCTATTTCA YPTS_2980 3311014 - 3311946 + | hypothetical protein TERM 3506 3312089 - 3312064 - T 87 -6.2 -5.13473 | gap 1, opp_overlap 3312064 ATTATATGTAAAAAA CCCGCATCGTT TTGGC AACGA-ACGGG CTTTTGTTATTCAGC YPTS_2981 3312466 - 3312128 - | nitrogen regulatory protein P-II YPTS_2982 3314103 - 3312481 - | NAD+ synthetase YPTS_2983 3314243 - 3314100 - | hypothetical protein YPTS_2984 3315600 - 3314263 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 3507 3314616 - 3314605 - GR 73 -7.2 -4.19371 | GAAACTGCGAACAAA CGGC TTAT GCCG CTTAGCCGACTCCCG YPTS_2985 3316645 - 3315563 - | lipoprotein TERM 3508 3315763 - 3315781 + gr 72 -7.4 -3.93383 | overlap 3315736 TTGACTTAGGGGCAA CCGGCTGA GCT TCAGTTGG TTTGGTGTCTGTTGG TERM 3509 3316559 - 3316543 - GR 89 -7.3 -5.00884 | ACGCTCCCCAAAAAA TCCCTCT GCC AGAGAGA CCGGTCTGTTTCACG YPTS_2986 3318085 - 3316649 - | integral membrane sensor signal transduction histidine kinase TERM 3510 3317261 - 3317289 + g 70 -2.4 -4.90266 | gap 2, overlap 3317264 ATCGGCCAAGAGCTC CGTCCCTTCACGCA TAC TG-GCG-AGGGGCG TTTTTAATTCATGGG YPTS_2987 3318264 - 3318163 - | hypothetical protein TERM 3511 3318204 - 3318225 + g 95 -8.1 -5.43866 | gap 1, opp_overlap 3318204 AAATAACAAAAAAAA GCAC-TTGCT GCG AGCAAAGTGC TTTTTTTAAAGGTTG TERM 3512 3318225 - 3318204 - G 100 -8.1 -6.25741 | gap 1, opp_overlap 3318204 AAATAACAAAAAAAA GCAC-TTGCT GCG AGCAAAGTGC TTTTTTTAAAGGTTG TERM 3513 3318412 - 3318379 - H 80 -9.8 -3.617 | gap 2, opp_overlap 3318379, overlap 3318377 3318387 3318399 ATAGACAACTAAACA TTGATCAACGGGGCAA TAAA TTGCCCCGTTG--CAA GAATATGTGGATGCC TERM 3514 3318406 - 3318387 - H 100 -13.6 -3.23638 | opp_overlap 3318379, overlap 3318379 3318377 3318399 CTAAACATTGATCAA CGGGGCAA TAAA TTGCCCCG TTGCAAGAATATGTG YPTS_2988 3319280 - 3319840 + | hypothetical protein TERM 3515 3320123 - 3320109 - f 73 -8.6 -3.68222 | TTTTAAGGTCAACAA CAAGTC AGT GACTTG GATGACAACGGTTAT YPTS_2989 3320292 - 3320741 + | hypothetical protein TERM 3516 3320822 - 3320794 - T 70 -2.6 -5.06411 | gap 1, overlap 3320801 ATAAAATAAAATAAA CTATATACCCAAA ATAA TTTGAGT-TACAG AAAAGCAACAAGGGA TERM 3517 3320958 - 3320936 - T 90 -11.4 -3.60597 | overlap 3320934 3320939 ATAAATTGATAAAGA GAAGGGTATC TTC AATACCCTTC AGACTGCTGACAAAC TERM 3518 3320955 - 3320939 - T 72 -7.3 -3.91369 | overlap 3320936 3320934 AATTGATAAAGAGAA GGGTATC TTC AATACCC TTCAGACTGCTGACA TERM 3519 3321045 - 3321019 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3321028, overlap 3321020 3321035 3321036 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGAA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3520 3321046 - 3321020 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3321028, overlap 3321019 3321035 3321036 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGAA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_2990 3325048 - 3321158 - | phosphoribosylformylglycinamidine synthase TERM 3521 3322101 - 3322114 + g 70 -8.1 -3.95073 | opp_overlap 3322101 3322100, overlap 3322100 TCTGCCCACCACAAG CGCAG AGTG CTGCG TTTCTCGCTGTACAC TERM 3522 3323062 - 3323103 + g 74 -2.9 -5.0538 | gap 1, opp_overlap 3323067 TCTGATCACGGGTGA CCATACCGGTTACCGTGCGG TCG CCG-ATGGTGATCAGGAAGG TTTTTTCCGCTACCG TERM 3523 3323759 - 3323770 + g 75 -5.8 -4.60487 | overlap 3323752 CAATTTGGCCCCCAC GGTG ATTT CACC TTTTTGCACATGATC TERM 3524 3326760 - 3326744 - g 100 -6.5 -5.69068 | overlap 3326755 GAAAAAGAGAAAAAA GCGGC TCAACAT GCCGC CATTGAGGCGGAGCT YPTS_2991 3325283 - 3326824 + | lytic transglycosylase catalytic TERM 3525 3326935 - 3326905 - T 79 -11 -3.18912 | overlap 3326906 TGATTTAGTCACCAA CCGCCGCCCGTCAT AAC ATGCTGGGCGGCGC ATCACCTGGCCGCCG TERM 3526 3326934 - 3326906 - T 100 -14.5 -2.51133 | overlap 3326905 GATTTAGTCACCAAC CGCCGCCCGTCAT AAC ATGCTGGGCGGCG CATCACCTGGCCGCC YPTS_2992 3327514 - 3326951 - | CMP/dCMP deaminase zinc-binding YPTS_2993 3328319 - 3327624 - | HAD family hydrolase YfhB YPTS_2994 3329433 - 3328546 - | glucokinase regulatory-like protein TERM 3527 3329964 - 3329951 - g 71 -4.5 -4.5442 | overlap 3329952 TGCTGAACGAGAAAA CCGCA GCAC TGCGA GCAACCCTAGACATT YPTS_2995 3329641 - 3330480 + | RpiR family transcriptional regulator YPTS_2996 3330717 - 3330902 + | iron-sulfur cluster-binding protein TERM 3528 3330979 - 3330955 - T 75 -5.8 -4.68593 | gap 1, opp_overlap 3330955 CCCAGTATGCAAAAA GGGATG-GCAT TTCC ATACCCATCCC TTAAATTTTCGGCTA YPTS_2997 3331388 - 3331008 - | holo-acyl-carrier-protein synthase YPTS_2998 3332119 - 3331388 - | pyridoxal phosphate biosynthetic protein PdxJ YPTS_2999 3333003 - 3332278 - | DNA repair protein RecO TERM 3529 3332862 - 3332849 - G 73 -8.1 -4.12599 | opp_overlap 3332849 AATAACGGCGTAAAA GGCTG CAAG CAGCC TTTTAAATTGGAACG TERM 3530 3332849 - 3332862 + g 75 -8.1 -4.27316 | opp_overlap 3332849 AATAACGGCGTAAAA GGCTG CAAG CAGCC TTTTAAATTGGAACG YPTS_3000 3333924 - 3333013 - | GTP-binding protein Era YPTS_3001 3334535 - 3333921 - | ribonuclease III YPTS_3002 3335951 - 3334953 - | signal peptidase I YPTS_3003 3337760 - 3335961 - | GTP-binding protein LepA TERM 3531 3337756 - 3337769 + g 77 -3.9 -5.01497 | AAGTTTCTTATATGC TTCAT TTAT ATGAA TTTTTCTCTAGTCGT TERM 3532 3338240 - 3338220 - H 75 -8.3 -3.80733 | GTGATTTTATAATAA CCAAGTGAA ATA TTCTCTTGG CGGTAACGAGGAGAG YPTS_3004 3338260 - 3339114 + | hypothetical protein YPTS_3005 3339590 - 3339135 - | positive regulator of sigma E, RseC/MucC TERM 3533 3339211 - 3339221 + g 71 -6.8 -4.26076 | CTGAGCCCCTCAATT CTGG TTG CCAG TTTTCGTGCCAGTAA YPTS_3006 3340543 - 3339587 - | sigma E regulatory protein, MucB/RseB TERM 3534 3340454 - 3340487 + g 91 -13.3 -3.59979 | gap 1, opp_overlap 3340456 GCCCATTTCCTGCAA CATTGCTATCGGCGTA GAT TCCGCCGA-AGCAATG TTTGCCATGAACAGG TERM 3535 3340485 - 3340456 - G 72 -10.1 -3.02144 | gap 1, opp_overlap 3340454 CCATTTCCTGCAACA TTGCTATCGGCGTA GAT TCCGCCGA-AGCAA TGTTTGCCATGAACA YPTS_3007 3341199 - 3340543 - | anti sigma-E protein, RseA YPTS_3008 3341800 - 3341225 - | ECF subfamily RNA polymerase sigma-24 factor TERM 3536 3342150 - 3342160 + G 70 -2.4 -4.91109 | overlap 3342139 AAAGGGCCTCTTAAT GAGG GAG CCAC TTTTTATGCTCAGGG TERM 3537 3343408 - 3343398 - g 74 -6.8 -4.46212 | GTCCGTACCACAAAA CGCT TAG AGCG GGCTTTACGGCGCAT TERM 3538 3343464 - 3343498 + G 74 -10.8 -2.79183 | opp_overlap 3343454 3343452 GAATATTATGCCAAT TTCCGTATCTCCAATA ACC TGCTGGAGTTACGGAA TCTGGTACAAGTCGC YPTS_3009 3341988 - 3343625 + | L-aspartate oxidase TERM 3539 3343671 - 3343647 - T 79 -11.4 -2.56539 | overlap 3343646 3343644 CTGAATCCATAAGAT TGAGGGCGTC TCTAC GACGCCCGCA GACTGCTGACAAACC TERM 3540 3343757 - 3343731 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3343740, overlap 3343732 3343747 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3541 3343758 - 3343732 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3343740, overlap 3343731 3343747 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3542 3343833 - 3343856 + T 83 -8.9 -4.08958 | gap 1, opp_overlap 3343832 ACTTTGTCAATAACC TCAGGGCGTC TCTAC GACGCCC-GA TTCTTATTTCACGCT YPTS_3010 3344666 - 3343908 - | methyltransferase small TERM 3543 3345155 - 3345140 - g 78 -5.4 -5.00616 | gap 1 TTCCCCCGCAAAAAA TCCG-GG CCA CCGCGGA TCCTGATCCTGACGC YPTS_3011 3344921 - 3346246 + | DEAD/DEAH box helicase domain-containing protein TERM 3544 3346267 - 3346284 + T 74 -4.8 -4.78237 | opp_overlap 3346262, overlap 3346262 3346255 TGCACGACAACAAAG CCGCTG CTCACA TAGCGG TTTTGTTGTCAGATA YPTS_3012 3346423 - 3346274 - | hypothetical protein YPTS_3013 3347033 - 3346377 - | ankyrin YPTS_3014 3347118 - 3347020 - | hypothetical protein YPTS_3015 3348073 - 3347111 - | phospholipase A TERM 3545 3348203 - 3348188 - R 100 -10.4 -5.1675 | opp_overlap 3348186 TCAGGCATGAAAAAA GGGGAC CGAA GTCCCC TATCACTTTATGATT YPTS_3016 3348635 - 3348252 - | formate C-acetyltransferase glycine radical TERM 3546 3348749 - 3348762 + H 73 -3.9 -5.0133 | overlap 3348748 AGCCCCTACCATTCT TTGAT TCAA ATCAA TTTTTTCACCACATC YPTS_3017 3348988 - 3349674 + | uracil-DNA glycosylase TERM 3547 3349726 - 3349753 + T 82 -10.6 -3.62597 | gap 1 GGACGTTGTCTGTAA CCTCACGCCA-CC TTC GGCTGCCGTGAGG TTATTGGAAGATCAG YPTS_3018 3350412 - 3349765 - | pyrrolidone-carboxylate peptidase YPTS_3019 3351441 - 3350422 - | hypothetical protein YPTS_3020 3352169 - 3351438 - | hypothetical protein TERM 3548 3351577 - 3351551 - G 73 -7.3 -4.15841 | gap 1, overlap 3351552 TCAGGAAAGCACAAA TCGCGGT-TGGG ATCC CCCACAGCGCGA TATGCAATGGTTCCG YPTS_3021 3352991 - 3352254 - | LamB/YcsF family protein YPTS_3022 3353938 - 3352988 - | urea amidolyase related protein YPTS_3023 3354588 - 3353932 - | allophanate hydrolase subunit 1 YPTS_3024 3354967 - 3355122 + | hypothetical protein TERM 3549 3355185 - 3355165 - T 100 -13.3 -2.9518 | overlap 3355157 TGTAAGACGGAGACA CGCCGATGC TAA ACATCGGCG AAAATAGCCCTATCC YPTS_3025 3355953 - 3355207 - | hypothetical protein YPTS_3026 3357130 - 3356093 - | cyclic-AMP phosphodiesterase YPTS_3027 3358584 - 3357121 - | DNA photolyase FAD-binding TERM 3550 3357973 - 3357941 - G 74 -4 -4.91109 | opp_overlap 3357950, overlap 3357942 3357950 TGTTCACGACAAAAA CGGCGTAAACGCTG TAAGG CAGCGTCTTCCCCT GCAGGAAATAACTGG YPTS_3028 3359196 - 3358714 - | hypothetical protein YPTS_3029 3359490 - 3359362 - | hypothetical protein TERM 3551 3359522 - 3359498 - R 100 -12.1 -5.16237 | AAGCGCATTAAAAAA GCCCGTGGGCA TGA TACTCACGGGC CAGCTATTTTTTGTA YPTS_3030 3359780 - 3359574 - | membrane protein TERM 3552 3359618 - 3359632 + g 73 -3.5 -4.84359 | ATTGGGTCAGCCAAA CCGGT TTATC ACTGG TTTTTATCCAGATAC TERM 3553 3360006 - 3359986 - H 71 -6.9 -4.12225 | opp_overlap 3359985 3359988 AATTAGCAAACCAAA TACATTCAC CCG GTGAAAGTA AGTTTCACAAACCAA TERM 3554 3360333 - 3360349 + G 81 -7.9 -4.60924 | TGTTGTTCGTGTTGT CCCGTCC GTT GGGTGGG TTTTTAGCACGTTTG TERM 3555 3361033 - 3361049 + G 70 -2.2 -4.92783 | TGCATTCAGTAATTT TGTCCA AATGC TGGCCA TTTTTCTGATCCCTT TERM 3556 3361184 - 3361196 + G 72 -10.5 -2.93447 | overlap 3361183 ATGTACGCCGAACTG GCGGG AAA CCCGC ATTTATCCCCGTTAG TERM 3557 3361836 - 3361852 + G 73 -8 -4.05926 | overlap 3361825 3361847 GTAACGGCACCCTGC CAACGG GTGGG CCGTTG TTTATCGGTTTATTG YPTS_3031 3360275 - 3361963 + | potassium-transporting ATPase, A subunit TERM 3558 3362810 - 3362844 + G 83 -9.2 -4.40298 | opp_overlap 3362810, overlap 3362812 GTGGAGGCCAGCCAA GCCGGTAGCCCGGTGA CCA TCACCGTGCTAGTCGC TTTATTGGTTTGCCT TERM 3559 3362812 - 3362843 + G 73 -10.2 -3.23094 | gap 1, opp_overlap 3362810, overlap 3362810 GGAGGCCAGCCAAGC CGG-TAGCCCGGTGA CCA TCACCGTGCTAGTCG CTTTATTGGTTTGCC TERM 3560 3363534 - 3363496 - g 73 -9.5 -3.30441 | gap 1, opp_overlap 3363493, overlap 3363497 GATCACCGGTGACAA TCGCCTAACCGCAGCGGC AATT GCCGCTGAAGCT-GGCGT AGATGATTTTCTGGC TERM 3561 3363533 - 3363497 - g 81 -13 -2.5805 | gap 1, opp_overlap 3363493, overlap 3363496 ATCACCGGTGACAAT CGCCTAACCGCAGCGGC AATT GCCGCTGAAGCT-GGCG TAGATGATTTTCTGG YPTS_3032 3362057 - 3364123 + | K+-transporting ATPase, B subunit TERM 3562 3364257 - 3364230 - f 71 -9.8 -2.72855 | opp_overlap 3364230 3364229, overlap 3364232 TAAACCGTTTAACCA CAGCCATCGCAC CCTG ATGCGGTGGCCG GTTTTAAGACACAAA TERM 3563 3364462 - 3364446 - g 82 -12.3 -3.25942 | ATGTTTTCACAGCAA GCCAGTG GTT CACTGGC GCGACTGGGCGATAA YPTS_3033 3364287 - 3364937 + | potassium-transporting ATPase, C subunit TERM 3564 3366296 - 3366323 + G 70 -9.8 -3.2657 | overlap 3366275 3366291 CCGCTGGCCTTCAGT GCTGGCGGCGGT GATT AATGTCGCCAGC TTCGATCTGTTTTTT TERM 3565 3366486 - 3366460 - g 75 -8 -4.15565 | opp_overlap 3366450 GCTATCAGGCTAAAA TTGCCCGTTATC GGG AACAACGGGCCA GACATCTGTATGAAA TERM 3566 3367568 - 3367582 + G 75 -3.5 -5.08255 | opp_overlap 3367565, overlap 3367567 GAAGCGTCAAGAGGG CGGAG CCAGC TTCCG TTTTGTTTTGCCACT YPTS_3034 3364947 - 3367673 + | osmosensitive K+ channel signal transduction histidine kinase TERM 3567 3367698 - 3367688 - f 82 -6.8 -4.77567 | overlap 3367689 AGGTTGATAACAAAA TGCC CGC GGCA GACAGAATAACGAAG YPTS_3035 3368250 - 3368879 + | two component transcriptional regulator YPTS_3036 3368974 - 3369402 + | hypothetical protein YPTS_3037 3369772 - 3369530 - | hypothetical protein YPTS_3038 3369928 - 3369815 - | hypothetical protein TERM 3568 3370068 - 3370091 + r 86 -11.8 -3.16564 | gap 1, opp_overlap 3370068 AAAACACATAAAAAA TCCGGCAACAG AGC CTGT-GCCGGA TTGATCGAGTGCCAA TERM 3569 3370091 - 3370068 - R 100 -11.8 -5.53079 | gap 1, opp_overlap 3370068 AAAACACATAAAAAA TCCGGCAACAG AGC CTGT-GCCGGA TTGATCGAGTGCCAA YPTS_3039 3371789 - 3370146 - | phosphoglucomutase, alpha-D-glucose phosphate-specific YPTS_3040 3372389 - 3371862 - | SeqA family protein TERM 3570 3372149 - 3372138 - G 73 -7.2 -4.27467 | opp_overlap 3372134 TAATACCAACATAAA GCGG TTAA CCGC CCTACTCTGTTCTGC YPTS_3041 3372884 - 3373252 + | hypothetical protein TERM 3571 3373298 - 3373327 + F 100 -15.9 -2.91065 | opp_overlap 3373303, overlap 3373300 3373303 3373319 AGTCGCCTCTTGTAG GATAATGCCCCTA AAAA TGGGGGCATTATC TGTGATGTCTATGAT TERM 3572 3373300 - 3373325 + F 93 -12.7 -3.00259 | opp_overlap 3373303, overlap 3373298 3373303 3373319 TCGCCTCTTGTAGGA TAATGCCCCTA AAAA TGGGGGCATTA TCTGTGATGTCTATG TERM 3573 3373303 - 3373322 + F 80 -10 -3.63762 | opp_overlap 3373303, overlap 3373300 3373298 3373319 CCTCTTGTAGGATAA TGCCCCTA AAAA TGGGGGCA TTATCTGTGATGTCT YPTS_3042 3373364 - 3373540 + | hypothetical protein TERM 3574 3373573 - 3373562 - T 70 -3.6 -4.8143 | TTAACAATCTAAAAA CGAC CCCA GCCG ATAACCACGTTGCGC YPTS_3043 3374308 - 3373547 - | YdjC family protein YPTS_3044 3375202 - 3374360 - | AraC family transcriptional regulator TERM 3575 3374874 - 3374844 - G 83 -6.8 -4.98061 | overlap 3374847 ATATAGGAAAGAAAA TCACCTCTTAAGCG ATA CGCCTGAGAGGCCA CAATAGGCCGAGACA TERM 3576 3374871 - 3374847 - G 78 -10.7 -3.34291 | overlap 3374844 TAGGAAAGAAAATCA CCTCTTAAGCG ATA CGCCTGAGAGG CCACAATAGGCCGAG YPTS_3045 3375586 - 3375239 - | phosphotransferase system PTS lactose/cellobiose-specific IIA subunit YPTS_3046 3377114 - 3375753 - | PTS system lactose/cellobiose family IIC subunit YPTS_3047 3377442 - 3377125 - | phosphotransferase system lactose/cellobiose-specific IIB subunit TERM 3577 3378769 - 3378751 - g 74 -11 -2.92668 | overlap 3378761 CAGTATGCAATTAGA TGCGGCCA AAC TGGCCACA GCCCGAGGCAGAGCA YPTS_3048 3378482 - 3378862 + | CrcB protein YPTS_3049 3378878 - 3379282 + | camphor resistance CrcB protein TERM 3578 3379319 - 3379340 + T 75 -7.3 -4.34402 | opp_overlap 3379319 TCGTGACAAAAAAAA CACCCTC ACTTAACC GAGGGTG TTTTGATATAAACAC TERM 3579 3379340 - 3379319 - T 100 -8 -5.93809 | opp_overlap 3379319 TCGTGACAAAAAAAA CACCCTCA CTTAAC CGAGGGTG TTTTGATATAAACAC YPTS_3050 3380555 - 3379380 - | TrkA domain-containing protein YPTS_3051 3381174 - 3381503 + | hypothetical protein TERM 3580 3381547 - 3381588 + T 91 -10.3 -4.20918 | opp_overlap 3381551, overlap 3381549 3381551 3381571 TATGTAACCTGTAAA AAAAGACACTCATTAAGCG TTAT CGGTTAATGAGTGTCTCTA TTTATTAGCCTTCCC TERM 3581 3381549 - 3381586 + T 100 -12.9 -3.70139 | opp_overlap 3381551, overlap 3381547 3381551 3381571 TGTAACCTGTAAAAA AAGACACTCATTAAGCG TTAT CGGTTAATGAGTGTCTC TATTTATTAGCCTTC TERM 3582 3381584 - 3381551 - T 100 -15.5 -5.43866 | opp_overlap 3381549 3381547 3381551 3381571 TAACCTGTAAAAAAA GACACTCATTAAGCG TTAT CGGTTAATGAGTGTC TCTATTTATTAGCCT TERM 3583 3381551 - 3381584 + T 100 -15.5 -3.4214 | opp_overlap 3381551, overlap 3381549 3381547 3381571 TAACCTGTAAAAAAA GACACTCATTAAGCG TTAT CGGTTAATGAGTGTC TCTATTTATTAGCCT YPTS_3052 3382726 - 3381668 - | high-affinity nickel-transporter TERM 3584 3381897 - 3381880 - G 71 -7 -3.99091 | opp_overlap 3381877 TAAAGAAAGCAATAA TCACCG ACGCAG CGGTGA TAGTGATATTGTAAT TERM 3585 3382767 - 3382799 + r 73 -10 -2.93853 | gap 1, overlap 3382763 CCTACCCGTTCTGAC CTGGCGTTATCGCTG ACAA CA-CGATAACGCCAA TAATTTGAGGTCTAT YPTS_3053 3383867 - 3382875 - | urea transporter TERM 3586 3383757 - 3383733 - G 71 -4.3 -4.72986 | opp_overlap 3383736 3383739 TATTGCGATGAAAAA GAATAGCCC GGTCAAT GGGTTATTC TGAAACATTACCTGA TERM 3587 3383996 - 3383975 - R 84 -10.1 -3.86346 | overlap 3383976 3383978 TCACTGGCTGATAAA CGAGGCTGG GTAC CCAGCCTCT CAGACTGCTGACAAA TERM 3588 3383995 - 3383976 - R 100 -13.6 -2.91593 | overlap 3383975 3383978 CACTGGCTGATAAAC GAGGCTGG GTAC CCAGCCTC TCAGACTGCTGACAA TERM 3589 3383993 - 3383978 - R 76 -10.4 -3.00946 | overlap 3383976 3383975 CTGGCTGATAAACGA GGCTGG GTAC CCAGCC TCTCAGACTGCTGAC TERM 3590 3384084 - 3384058 - R 84 -10.1 -3.8647 | gap 1, overlap 3384059 AGGCAGGAGAGTAAA GCGTCCGCGCCA CGGA TGGCGCGG-CTC GAGCCCCCAGGGATG TERM 3591 3384085 - 3384059 - R 73 -10.1 -2.914 | gap 1, opp_overlap 3384084, overlap 3384058 GGCAGGAGAGTAAAG CG-TCCGCGCCA CGGA TGGCGCGGCTCG AGCCCCCAGGGATGG TERM 3592 3384163 - 3384182 + r 100 -13.6 -3.09327 | overlap 3384165 TTGTCAATAACCTCC GAGGCTGG GTAC CCAGCCTC TATTCAATAGACTGA TERM 3593 3384165 - 3384180 + r 77 -10.4 -3.10522 | overlap 3384163 GTCAATAACCTCCGA GGCTGG GTAC CCAGCC TCTATTCAATAGACT YPTS_3054 3385211 - 3384246 - | urease accessory protein UreD TERM 3594 3384819 - 3384839 + g 72 -6.2 -4.431 | overlap 3384808 GATCTGCGAGGCGTA GTTCGCAT TCATC ATGTGAAC TTTTGTGGCTGACTG YPTS_3055 3385870 - 3385208 - | urease accessory protein UreG YPTS_3056 3386683 - 3385997 - | urease accessory protein UreF YPTS_3057 3387400 - 3386705 - | UreE urease accessory domain-containing protein YPTS_3058 3389414 - 3387696 - | urease, alpha subunit TERM 3595 3388800 - 3388788 - G 73 -10.5 -3.14211 | opp_overlap 3388786, overlap 3388774 AGCCTGTTCCAGCAA CGGGC CGC GCCCG TATGAATTACCTTTC YPTS_3059 3389980 - 3389504 - | urease, beta subunit YPTS_3060 3390293 - 3389991 - | urease, gamma subunit YPTS_3061 3391373 - 3391248 - | hypothetical protein YPTS_3062 3392157 - 3391492 - | ABC transporter related YPTS_3063 3392956 - 3392150 - | ABC transporter related YPTS_3064 3393762 - 3392956 - | binding-protein-dependent transport systems inner membrane component YPTS_3065 3394727 - 3393759 - | binding-protein-dependent transport systems inner membrane component YPTS_3066 3396304 - 3394727 - | extracellular solute-binding protein TERM 3596 3395233 - 3395246 + g 73 -2.3 -5.05601 | ACCAAAGCGTTATCT TAGCC GGTA GGCCA TTTTTCTCTCTGATG TERM 3597 3396261 - 3396250 - G 79 -2.2 -5.36441 | CTGGGACAGAAAAAA CGCT CAAT AACG CAGTTGCCACCAAGG TERM 3598 3397124 - 3397107 - R 100 -9.1 -6.25741 | opp_overlap 3397106 3397107 AAATAATAAAAAAAA CCCCGTC AAAA GACGAGG CTTCTAAATCTATTT YPTS_3067 3397382 - 3397170 - | cold-shock DNA-binding domain-containing protein YPTS_3068 3397910 - 3398248 + | hypothetical protein TERM 3599 3398545 - 3398527 - g 73 -2.4 -5.10933 | opp_overlap 3398527, overlap 3398528 CTACTGAAAATAAAA CCGATTTA TAT TGAATCGA TGTTGCAAGAGATGG YPTS_3069 3398413 - 3398862 + | hypothetical protein YPTS_3070 3399295 - 3398960 - | hypothetical protein TERM 3600 3399734 - 3399715 - R 100 -9.3 -5.63504 | opp_overlap 3399717 AAGCTTATAAAAAAA CACCCAC AATTAA GTGGGTG ATTGGGATTAACCTG YPTS_3071 3400139 - 3399774 - | acid shock repeat-containing protein TERM 3601 3399826 - 3399851 + g 90 -9 -4.63527 | gap 1, overlap 3399828 3399829 TTATGGTGCTTTTTC GCTGCCTGTGC TTTTT GCACGGGC-GC TTTTTGAACTGATGC YPTS_3072 3400661 - 3400897 + | glutaredoxin-like protein NrdH YPTS_3073 3400911 - 3401315 + | NrdI protein TERM 3602 3402736 - 3402749 + G 85 -5.9 -5.03314 | CCTGCACGGTTATCT GGCGC GGGA GCGTC TTTTTTACGGCTCGG YPTS_3074 3401297 - 3403447 + | ribonucleoside-diphosphate reductase, alpha subunit YPTS_3075 3403554 - 3404525 + | ribonucleotide reductase TERM 3603 3404607 - 3404591 - f 80 -3.5 -5.37043 | ATTCTAGATAAAAAA GGGGGAG ACT CAGCCCC AATAGGCAGTTAGCC YPTS_3076 3405201 - 3406400 + | glycine betaine/L-proline ABC transporter, ATPase subunit YPTS_3077 3406393 - 3407559 + | binding-protein-dependent transport systems inner membrane component TERM 3604 3408074 - 3408060 - gT 70 -7.8 -3.6501 | overlap 3408053 3408051 AATAATGATGGCAAA GCCGAT CTG ACCGGC TGTAACCCCGGCTGG TERM 3605 3408409 - 3408396 - gT 79 -2.3 -5.4505 | overlap 3408398 GTGGCGAACAAAAAA TGGGC TGAA GCCAA TCCGGCAGCCGCCAA YPTS_3079 3408709 - 3408545 - | hypothetical protein YPTS_3078 3407607 - 3408611 + | substrate-binding region of ABC-type glycine betaine transport system TERM 3606 3408643 - 3408624 - GT 80 -6.5 -4.7033 | TAAGTTAAGAGAAAA CAGATAC TTTCGG GTATCTG TGAGGTTATTGACAA TERM 3607 3408721 - 3408747 + Tr 72 -10.1 -2.88849 | gap 1, opp_overlap 3408710, overlap 3408716 3408722 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3608 3408722 - 3408748 + Tr 84 -10.1 -3.82218 | gap 1, opp_overlap 3408710, overlap 3408716 3408721 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3609 3408811 - 3408830 + Tr 91 -7.2 -5.28176 | overlap 3408795 3408792 3408807 TTGTCAGCAGTCTGA CAGATACT TTCG GGTATCTG TTTTTTATCCCTACC YPTS_3080 3409791 - 3408841 - | urate catabolism protein YPTS_3081 3410112 - 3411596 + | permease for cytosine/purines uracil thiamine allantoin TERM 3610 3411616 - 3411642 + T 76 -9.5 -3.52113 | opp_overlap 3411616 3411617, overlap 3411617 AGCAGAAACGACAAA TCCCTGAGTTA TTACT TAACTCAGGGC TTCTAAATTTTGGCG TERM 3611 3411642 - 3411616 - T 85 -9.5 -4.18303 | opp_overlap 3411616 3411617, overlap 3411617 AGCAGAAACGACAAA TCCCTGAGTTA TTACT TAACTCAGGGC TTCTAAATTTTGGCG TERM 3612 3411617 - 3411641 + T 91 -13 -2.70786 | opp_overlap 3411617 3411616, overlap 3411616 GCAGAAACGACAAAT CCCTGAGTTA TTACT TAACTCAGGG CTTCTAAATTTTGGC TERM 3613 3411641 - 3411617 - T 95 -13 -3.09897 | opp_overlap 3411616 3411617, overlap 3411616 GCAGAAACGACAAAT CCCTGAGTTA TTACT TAACTCAGGG CTTCTAAATTTTGGC YPTS_3082 3412606 - 3411842 - | DNA polymerase III, epsilon subunit TERM 3614 3412957 - 3412937 - g 73 -2.4 -5.11033 | overlap 3412938 3412939 CATAACTGGAAAAAA CGCGGCTG GAAAA CAGCCGAT CGCAAGCCAGTGCGC YPTS_3083 3412676 - 3413140 + | ribonuclease H YPTS_3084 3413914 - 3413195 - | methyltransferase type 11 TERM 3615 3413337 - 3413363 + g 93 -8.7 -5.06414 | overlap 3413338 CATCCCAACGCAGGC AGGTGGGTACT GATAA AGTGCCCACCG TTTTTATTGAAGGGC TERM 3616 3413338 - 3413362 + g 88 -12.2 -3.63367 | overlap 3413337 ATCCCAACGCAGGCA GGTGGGTACT GATAA AGTGCCCACC GTTTTTATTGAAGGG TERM 3617 3414243 - 3414208 - g 75 -3.2 -5.07107 | overlap 3414210 3414231 GAAACTGCGAAAAAA GGGGCCACCGTCAT TGTTAATG ATGGCGATAGCCTC ACCATTGCCGGACAA YPTS_3085 3413959 - 3414714 + | hydroxyacylglutathione hydrolase TERM 3618 3415545 - 3415513 - g 80 -7 -4.58395 | TTTATGTTCCAAAAA TGCTGGCCTTGGGT GATTT ACTCAAGAACAGCA AAAAGTACGGTATAA YPTS_3086 3414747 - 3416174 + | lytic transglycosylase catalytic TERM 3619 3416196 - 3416211 + T 100 -9 -5.71983 | opp_overlap 3416196 AATCACTGTCAAAAA GCACCT TTCG AGGTGC TTTTTTTATGGTTGG TERM 3620 3416211 - 3416196 - T 100 -9 -4.60889 | opp_overlap 3416196 AATCACTGTCAAAAA GCACCT TTCG AGGTGC TTTTTTTATGGTTGG YPTS_3087 3416978 - 3416217 - | endonuclease/exonuclease/phosphatase TERM 3621 3416327 - 3416313 - G 75 -3.4 -5.13354 | overlap 3416315 GCGATAAAAAATAAA GTCCAG AGG CCGGCC GAACGCACGACTGCG TERM 3622 3416720 - 3416704 - G 70 -2.2 -4.8622 | TGGGGCAATGAAAAA GCAGGT ACCTG ATCTGC GGCCTGATAGCTGGC YPTS_3088 3417806 - 3417360 - | hypothetical protein TERM 3623 3417834 - 3417816 - R 100 -9.6 -5.83211 | CACCAAAATAAAAAA CCACCTCA ATG TAAGGTGG CTCGTCCAGTGTCTT YPTS_3089 3418662 - 3417859 - | aldo/keto reductase TERM 3624 3419015 - 3418995 - R 100 -14.1 -5.24449 | opp_overlap 3418995 TATAAATGCAAAAAA CCCTGAATC TAA GATTCAGGG TTTTGCAATAAGTGG TERM 3625 3418995 - 3419015 + r 100 -14.1 -4.14739 | opp_overlap 3418995 TATAAATGCAAAAAA CCCTGAATC TAA GATTCAGGG TTTTGCAATAAGTGG TERM 3626 3419450 - 3419440 - R 74 -6.8 -4.27316 | opp_overlap 3419440 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 3627 3420562 - 3420573 + r 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 3628 3420609 - 3420635 + r 70 -9.4 -2.75844 | opp_overlap 3420585 3420587, overlap 3420608 3420611 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 3629 3421069 - 3421087 + r 82 -10.3 -3.57798 | overlap 3421062 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 3630 3422525 - 3422562 + r 78 -5.7 -4.7629 | opp_overlap 3422519 3422525 3422528, overlap 3422528 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 3631 3422528 - 3422559 + r 78 -7.4 -4.47888 | opp_overlap 3422528 3422525 3422519, overlap 3422525 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA YPTS_3092 3425376 - 3424810 - | D,D-heptose 1,7-bisphosphate phosphatase YPTS_3093 3425563 - 3426594 + | D-methionine ABC transporter, ATPase subunit TERM 3632 3427005 - 3426994 - g 71 -4.4 -4.79223 | GCAGATCATCAAAAA GGTA TTAT TACC AGAAGCCCTGCCCGG YPTS_3094 3426587 - 3427240 + | binding-protein-dependent transport systems inner membrane component YPTS_3095 3427304 - 3428119 + | YaeC family lipoprotein TERM 3633 3428152 - 3428175 + F 100 -16.8 -3.97674 | opp_overlap 3428155, overlap 3428155 TATTGAATATATCGA CAAGACGGGC TATA GCCCGTCTTG TTATTTGAATAATAG TERM 3634 3428172 - 3428155 - f 100 -12.7 -3.42583 | opp_overlap 3428152 3428155 TGAATATATCGACAA GACGGGC TATA GCCCGTC TTGTTATTTGAATAA TERM 3635 3428155 - 3428172 + F 100 -12.7 -4.10744 | opp_overlap 3428155, overlap 3428152 TGAATATATCGACAA GACGGGC TATA GCCCGTC TTGTTATTTGAATAA YPTS_3096 3428237 - 3428644 + | putative lipoprotein TERM 3636 3428717 - 3428697 - g 74 -3.9 -4.99645 | overlap 3428699 ACCGTATAAAGAAAA GTTTGCGGT ACC ACGGCAACC CGGTTTGGTTGAGGA YPTS_3097 3428641 - 3429348 + | hypothetical protein TERM 3637 3431106 - 3431095 - g 85 -5.8 -5.09762 | AGTGGAATACAAAAA CCGA CGCG TCGG TGAAAAACAAATGAT YPTS_3098 3429452 - 3431170 + | prolyl-tRNA synthetase TERM 3638 3431246 - 3431281 + T 76 -7.7 -4.23999 | gap 2, opp_overlap 3431249 GGGTATTTTACTGAT GAAGCCGC-CGG-AG AACTTGAA CTGCCGTGCGGCTTC TTATTTTAGCTATGG YPTS_3099 3431987 - 3431304 - | copper resistance lipoprotein NlpE YPTS_3100 3432512 - 3432072 - | class I peptide chain release factor TERM 3639 3432500 - 3432525 + g 74 -9.1 -3.6445 | overlap 3432501 3432503 ACACACTTATTGCCC GTAGTTTTGCC ATTC GGCAAAACTAA TTTCCAGATTATTCT TERM 3640 3432501 - 3432524 + g 81 -12.6 -2.77947 | overlap 3432500 3432503 CACACTTATTGCCCG TAGTTTTGCC ATTC GGCAAAACTA ATTTCCAGATTATTC TERM 3641 3432503 - 3432522 + g 74 -10.8 -2.92935 | overlap 3432501 3432500 CACTTATTGCCCGTA GTTTTGCC ATTC GGCAAAAC TAATTTCCAGATTAT YPTS_3101 3433039 - 3432491 - | YaeQ family protein TERM 3642 3433445 - 3433430 - g 78 -11.8 -3.08679 | opp_overlap 3433431 CTCCGTTAGGGAACA GGCGGC CTAT GCCGCC GCTAACTTATTGGTG YPTS_3102 3433281 - 3433481 + | hypothetical protein YPTS_3103 3433468 - 3433728 + | transcriptional antiterminator, Rof TERM 3643 3433743 - 3433778 + T 100 -17 -4.1043 | opp_overlap 3433750, overlap 3433750 GTTTCCACTTCCTTG TGAAAAACGGGTCGCT GAAG AGCGGCCCGTTTTGCA TTTATCCTATTTACA TERM 3644 3433771 - 3433750 - T 100 -11.5 -4.56597 | opp_overlap 3433743 3433750 CTTCCTTGTGAAAAA CGGGTCGCT GAAG AGCGGCCCG TTTTGCATTTATCCT TERM 3645 3433750 - 3433771 + T 100 -13.7 -4.40173 | opp_overlap 3433750, overlap 3433743 CTTCCTTGTGAAAAA CGGGTCGCT GAAG AGCGGCCCG TTTTGCATTTATCCT YPTS_3104 3434299 - 3433982 - | cytochrome c class I YPTS_3105 3435918 - 3434536 - | tRNA(Ile)-lysidine synthetase TERM 3646 3434676 - 3434656 - G 76 -9 -3.84185 | TTCACCGAAATATAA CAGCGGAA TACGT TCCCGCTG CCATGGGGGAATACC YPTS_3106 3436318 - 3435920 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3647 3436479 - 3436457 - R 100 -5.5 -6.08563 | opp_overlap 3436457 3436465 3436470 AATAGATAAAAAAAA CCGGCGC TTAAATTCC GCACCGG CTTTTATCAGTTGGC YPTS_3107 3437461 - 3436502 - | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 3648 3436691 - 3436714 + g 78 -11 -3.31792 | CTTCAGTTCTTTTAG GCGATGTGCA GTAA TGCCCATCGC TTCTGCGGCTAATGG TERM 3649 3437378 - 3437406 + g 71 -6.8 -4.27584 | gap 1 ATCTAATTTTTCGTC TTGAC-GGCTGAC TGCA GTCAGCGAGTCAA TTTTCGCTTCCAGCT YPTS_3108 3440989 - 3437474 - | DNA polymerase III, alpha subunit TERM 3650 3438328 - 3438338 + g 75 -5.4 -4.8048 | opp_overlap 3438328 GTTTTTCTAAAATAC GCTT GTT AAGC TTTTTGGTATCGACA TERM 3651 3438786 - 3438809 + g 82 -5.2 -5.07486 | opp_overlap 3438786, overlap 3438788 TCTTCAAATACAGAA CGCTGCTTAG CCAT CTCAGCAGGG TTTTTCTTACCCATG TERM 3652 3439608 - 3439595 - G 71 -6.7 -4.25056 | overlap 3439599 GATCCGATCAACAAA GCCAT AGGG ATGGC CTAATACACGGCCGA TERM 3653 3440055 - 3440071 + g 75 -5.1 -4.82901 | overlap 3440056 AATTCCAAACGTTCT TCCAAAC CTT GTTTGGC TTTTTCTACCAGAAA YPTS_3109 3441715 - 3441119 - | ribonuclease HII/HIII TERM 3654 3441540 - 3441568 + g 79 -2.3 -5.50499 | overlap 3441541 3441542 3441544 TCAGTGATTTCGTCA TACAGTGACAGGC GGC GCTTCTCGCTGAG TTTTTTTGAATCTGC YPTS_3110 3442896 - 3441712 - | lipid-A-disaccharide synthase YPTS_3111 3443688 - 3442900 - | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase YPTS_3112 3444222 - 3443692 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ TERM 3655 3444257 - 3444245 - R 70 -2.7 -5.00616 | overlap 3444246 TTCCTGTCTAAAAAA CTGAT GCT ATCAA CAACACGGCCTGCAC YPTS_3113 3445402 - 3444380 - | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TERM 3656 3445353 - 3445321 - G 75 -11.4 -2.63823 | gap 1, overlap 3445309 3445318 3445317 AATGCATAGAAGCGA TGC-CGGTGATGACA AGAT CGCCATCACCGTGCA CCTGTGCATCCAACT YPTS_3114 3445903 - 3445406 - | outer membrane chaperone Skp (OmpH) TERM 3657 3445524 - 3445542 + g 73 -4.6 -4.6759 | opp_overlap 3445519 3445524 ACAGATTTAACAGCA TCCTGA ATACGGC TCAGGA TTTTGTTACGCTCTT YPTS_3115 3448448 - 3446061 - | outer membrane protein assembly complex, YaeT protein TERM 3658 3447438 - 3447448 + g 73 -5.4 -4.49311 | overlap 3447419 ATCCACGTTGATATG CAGT TTA ACTG TTTTATCGTCATCAT YPTS_3116 3449840 - 3448485 - | membrane-associated zinc metalloprotease YPTS_3117 3450717 - 3449869 - | phosphatidate cytidylyltransferase YPTS_3118 3451485 - 3450727 - | undecaprenyl diphosphate synthase TERM 3659 3451242 - 3451230 - G 82 -5.5 -5.06414 | GTGCTCGAACAAAAA GCTCC ATC AGAGC GGTCACTTCTTGGTC TERM 3660 3451574 - 3451555 - R 100 -8.6 -5.63504 | gap 1, opp_overlap 3451555, overlap 3451567 AAGTGCACAAAAAAA GCCGTGTAC CAA GT-CACGGC TTCTGGAGTGACAGC YPTS_3119 3452905 - 3451709 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 3661 3453104 - 3453075 - R 100 -11.5 -5.44721 | gap 1, opp_overlap 3453080, overlap 3453080 ATGACCGGAAAAAAA GCA-AAGCGCCGCC TAA GGCGACGCTTATAC AATGCGAGTAGAGAT TERM 3662 3453098 - 3453080 - R 100 -13.8 -4.5187 | opp_overlap 3453080, overlap 3453075 CGGAAAAAAAGCAAA GCGCCGCC TAA GGCGACGC TTATACAATGCGAGT TERM 3663 3453080 - 3453098 + r 86 -11.6 -3.32963 | opp_overlap 3453080 3453075 CGGAAAAAAAGCAAA GCGCCGCC TAA GGCGACGC TTATACAATGCGAGT YPTS_3120 3453676 - 3453119 - | ribosome recycling factor YPTS_3121 3454537 - 3453812 - | uridylate kinase TERM 3664 3453853 - 3453871 + g 72 -5.8 -4.33153 | opp_overlap 3453855, overlap 3453855 TCTCACCCATCACCA CACGACGC AAA GCGCCGGG TTTATTCATGTTGAA TERM 3665 3454154 - 3454141 - G 75 -5.3 -4.72986 | TACCCGCAGCAAAAA TAACC ACAC GGTTA TGACGCAGCAAGCTA TERM 3666 3454736 - 3454713 - R 100 -12.4 -4.68384 | opp_overlap 3454713 ATCGAGTGAATAAAA TGGAACCGCC TATT GGCGGCCCCA TTTGGAGCATTAAGA TERM 3667 3454713 - 3454736 + r 70 -8 -3.57561 | opp_overlap 3454713 ATCGAGTGAATAAAA TGGAACCGCC TATT GGCGGCCCCA TTTGGAGCATTAAGA YPTS_3122 3455603 - 3454746 - | translation elongation factor Ts TERM 3668 3455675 - 3455657 - R 100 -16 -3.74792 | CATTAGATATGCAAA GGGGGCCT ATA AGGCCCCC CTAACCAACATATTT TERM 3669 3455738 - 3455750 + r 76 -7.7 -4.16842 | CGGACTTATTATTCA GCTTC TAC GAAGC TTTCTTCCGCCTGAA YPTS_3123 3456456 - 3455731 - | ribosomal protein S2 YPTS_3124 3456891 - 3457682 + | methionine aminopeptidase, type I TERM 3670 3457706 - 3457692 - g 90 -12.8 -3.6216 | opp_overlap 3457692, overlap 3457686 GAGTAATAATGACAA GCCGGC ACC GCCGGC TTTTTTATGGGCTGC TERM 3671 3457692 - 3457706 + G 100 -12.8 -5.26316 | opp_overlap 3457692 3457686 GAGTAATAATGACAA GCCGGC ACC GCCGGC TTTTTTATGGGCTGC TERM 3672 3458804 - 3458786 - g 70 -2.3 -4.87291 | GAGGCGAATGAAAAA CCGCGTC CACTT GACGAAG AGTTTCAACTACGGG TERM 3673 3459627 - 3459617 - g 71 -4.6 -4.65895 | TTTGCGACCGAAAAA CAGC TAC GCCG CGGAATGCAAAATAG YPTS_3125 3457685 - 3460423 + | UTP-GlnB uridylyltransferase, GlnD YPTS_3126 3460598 - 3461422 + | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TERM 3674 3461432 - 3461452 + F 100 -8.3 -5.53288 | opp_overlap 3461431 3461429 3461432 3461434 GACTAAGATTAAGAG TAGCGGG CTAACCA CCCGCTA TTTTTTTGCCTTACG TERM 3675 3461869 - 3461844 - g 79 -2.5 -5.46706 | ATTTGAAAAGAAAAA TTCTGGATGAC CTAC GTCACCTGGAA AGTGTTGTCACCAAT YPTS_3127 3461546 - 3461935 + | hypothetical protein TERM 3676 3462004 - 3461969 - T 86 -12.1 -3.17194 | overlap 3461971 ACCTCGGTAACCGAA TACGTATTGTGACAA CGAAAC TTGCCACAATACGCA ATAAAATCAAGATAT TERM 3677 3462002 - 3461971 - T 93 -12.5 -3.14878 | overlap 3461969 CTCGGTAACCGAATA CGTATTGTGACAA CGAAAC TTGCCACAATACG CAATAAAATCAAGAT YPTS_3128 3462474 - 3462025 - | flavodoxin/nitric oxide synthase YPTS_3129 3463275 - 3462502 - | pseudouridine synthase YPTS_3130 3463607 - 3463275 - | hypothetical protein TERM 3678 3463782 - 3463759 - g 100 -12.5 -6.32976 | opp_overlap 3463759 3463756 3463751 AAAAAAACAAAAAAA GGGGTACTG TTTTAC CAGTACCCC TCAATTCGTTTTATA TERM 3679 3463759 - 3463782 + G 78 -12.5 -2.67189 | opp_overlap 3463759, overlap 3463756 3463751 AAAAAAACAAAAAAA GGGGTACTG TTTTAC CAGTACCCC TCAATTCGTTTTATA YPTS_3131 3463684 - 3463920 + | hypothetical protein YPTS_3132 3464850 - 3464299 - | Syd family protein YPTS_3133 3464982 - 3465827 + | 7-cyano-7-deazaguanine reductase TERM 3680 3466363 - 3466375 + G 83 -6.3 -4.90471 | GAGCTCCAGTCATTT GACTA ACC TAGTC TTTTCTATTTTACGT TERM 3681 3466993 - 3467016 + G 75 -10.3 -3.42354 | opp_overlap 3466991 3466993 3466996 GCCACTGGTGAAAGA GTATCGCCG TAATAC CGGCGATGC TTATAGCTTCAACTG YPTS_3134 3465980 - 3467344 + | hypothetical protein TERM 3682 3467433 - 3467420 - f 75 -3.1 -5.1861 | TTGAGCAGCAAAAAA TGACA AATC TGCCA AGAGTAAATTTAAAT YPTS_3135 3467604 - 3468359 + | 5'-3' exonuclease TERM 3683 3468397 - 3468374 - T 100 -14.6 -4.90455 | ATATACGCATAAAAA CTAAGGGGCC AATA GGCCCCTCAG ACTGCTGACAAACCC TERM 3684 3468482 - 3468456 - T 84 -10.1 -3.82218 | gap 1, overlap 3468457 3468472 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACTACATGG TERM 3685 3468483 - 3468457 - T 72 -10.1 -2.88849 | gap 1, overlap 3468456 3468472 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACTACATGGA TERM 3686 3468564 - 3468579 + T 86 -11.8 -3.16154 | opp_overlap 3468560 3468559 TTGTCAATAACCTCA GGGGCC AACA GGCCCC TTAAATATGATGTTA YPTS_3136 3469716 - 3468610 - | hypothetical protein YPTS_3137 3470104 - 3469709 - | hypothetical protein TERM 3687 3469807 - 3469765 - G 72 -6.2 -4.46404 | opp_overlap 3469787 3469789, overlap 3469769 CAATCAACATCAAAA TCCATCCCGCCAGAAAACAG ACT CCGCCTACTGGCGTGATATA TATCCACAGTCTCAG TERM 3688 3470076 - 3470064 - G 100 -9.1 -5.47431 | GCAACATAGAAAAAA CCGCT CAG AGCGG AAAATATCAGCATTA YPTS_3138 3471187 - 3470270 - | LysR family transcriptional regulator TERM 3689 3471421 - 3471439 + r 84 -3.8 -5.54192 | opp_overlap 3471424, overlap 3471422 3471424 TCTGGTATGCCAGAC ATAGTAGC TAA GCTACTGC TTTTTTTCACTTCCT TERM 3690 3471422 - 3471438 + r 72 -7.3 -3.90888 | opp_overlap 3471424, overlap 3471421 3471424 CTGGTATGCCAGACA TAGTAGC TAA GCTACTG CTTTTTTTCACTTCC TERM 3691 3471492 - 3471512 + r 100 -9.7 -6.00086 | TAGTGATTTTATGCA GCACCGTTA TTT TGGCGGTGC TTTTTTTTATCCTAT YPTS_3139 3471770 - 3471651 - | hypothetical protein YPTS_3140 3471847 - 3473052 + | cysteine desulfurase, catalytic subunit CsdA YPTS_3141 3473188 - 3473628 + | cysteine desulfurase, sulfur acceptor subunit CsdE YPTS_3142 3474491 - 3473664 - | UBA/THIF-type NAD/FAD binding protein TERM 3692 3473756 - 3473745 - G 72 -5.8 -4.31895 | AGACACAGCAACAAA GCCA AACG TGGC AGTAACCATCGTTGC TERM 3693 3474595 - 3474580 - R 100 -11.8 -4.20084 | opp_overlap 3474580 AGTACTCATGCAAAA GCGGCC AACT GGCCGC TTAATCAAAACAAAT TERM 3694 3474580 - 3474595 + r 86 -11.8 -3.14211 | opp_overlap 3474580 AGTACTCATGCAAAA GCGGCC AACT GGCCGC TTAATCAAAACAAAT YPTS_3143 3475806 - 3474634 - | MltA domain-containing protein TERM 3695 3474676 - 3474699 + g 73 -8.8 -3.86897 | gap 1 TGACGAATCATTACT GGTAGGCTCGC TCT GCGTGCC-ACC TTTATAAGCAGTGAA TERM 3696 3476488 - 3476501 + r 100 -8.1 -6.02919 | opp_overlap 3476488 GATATCATCATTAGA CACCC TATC GGGTG TTTTTTTGTTTCTGG YPTS_3144 3477937 - 3476687 - | cell wall hydrolase/autolysin YPTS_3145 3478173 - 3479498 + | amino-acid N-acetyltransferase TERM 3697 3479616 - 3479639 + T 75 -8.8 -3.66772 | opp_overlap 3479617, overlap 3479617 TATTTGAAACAGATA ACTCAGGGCG CTTA TGCCCTGAGA TTATTGGCGATTTAA TERM 3698 3479617 - 3479638 + T 89 -12.3 -2.79581 | opp_overlap 3479617, overlap 3479616 ATTTGAAACAGATAA CTCAGGGCG CTTA TGCCCTGAG ATTATTGGCGATTTA TERM 3699 3479638 - 3479617 - T 95 -11.6 -3.76634 | opp_overlap 3479616 3479617 ATTTGAAACAGATAA CTCAGGGC GCTTAT GCCCTGAG ATTATTGGCGATTTA YPTS_3146 3481598 - 3479640 - | exodeoxyribonuclease V, alpha subunit TERM 3700 3479754 - 3479738 - G 71 -6.5 -4.1552 | overlap 3479739 CATCGCTGCAATAAA GCGTCAG ATG CTGACGG GCGCGGGTAATGGCG YPTS_3147 3485257 - 3481595 - | exodeoxyribonuclease V, beta subunit YPTS_3148 3488142 - 3485254 - | peptidase M16 domain-containing protein TERM 3701 3485818 - 3485806 - G 74 -9.1 -3.61715 | GATCTGCCCTAACAA GGCAC TAC GTGCC ATACCAGCAATTTCT TERM 3702 3486959 - 3486977 + g 100 -6 -5.52986 | AGATTCAATACATGT GCAATTTC ATC GAAATAGC TTTTTTTAATCCCCT TERM 3703 3487037 - 3487023 - G 83 -6.4 -4.88407 | TGATGTAATCAAAAA TTGCCG CGA CGACAA CATCACGTTGTGCCA YPTS_3149 3491595 - 3488224 - | exodeoxyribonuclease V, gamma subunit YPTS_3150 3492140 - 3491730 - | prepilin peptidase dependent protein-like protein YPTS_3151 3492598 - 3492128 - | membrane protein YPTS_3152 3493203 - 3492595 - | prepilin peptidase dependent protein YPTS_3153 3493763 - 3493194 - | prepilin-type N-terminal cleavage/methylation domain-containing protein TERM 3704 3493685 - 3493697 + g 80 -4.9 -5.04601 | TTATTAGTGATCTTT GTTTT ATA AAAAC TTTTTGCTTTCTAAG YPTS_3154 3493995 - 3493750 - | hypothetical protein TERM 3705 3493867 - 3493882 + g 73 -4.7 -4.82901 | AAATACAGGGAGGTC TGCGA TACGAC TCGCA TTTTTATCGGAAGAC TERM 3706 3494005 - 3493987 - G 80 -8.8 -4.36485 | ATAAAAGACGCAAAA CGGAGCCA TTA CAGCTCCG ATATGAAGATTAAAT YPTS_3155 3494809 - 3494015 - | thymidylate synthase TERM 3707 3494387 - 3494366 - G 83 -7.3 -4.6902 | gap 1, opp_overlap 3494366 3494375, overlap 3494370 GTAGAACTGGAAAAA GGCA-TGGCA TGG TGCCAACGCC ATTTGATCCAGTTCG YPTS_3156 3495688 - 3494816 - | prolipoprotein diacylglyceryl transferase YPTS_3157 3498185 - 3495939 - | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 3708 3498025 - 3497995 - G 78 -12.5 -2.62983 | opp_overlap 3497995 3497996, overlap 3497984 GCCAGCGTGATAGTA CGCCCACGGGGCT TTTTC AGCCCCCTGGTCG CCATTAGGTAGTAAC TERM 3709 3497996 - 3498006 + g 83 -8.2 -4.57073 | opp_overlap 3497984 3497995, overlap 3497995 CCAGCGTGATAGTAC GCCC ACG GGGC TTTTTCAGCCCCCTG YPTS_3158 3498725 - 3498198 - | NUDIX hydrolase TERM 3710 3499144 - 3499134 - H 81 -5.4 -5.10497 | AAGTTACGCAAAAAA GAGT AAA ACTC GCAAAAAAGCCTCTC TERM 3711 3499167 - 3499153 - H 73 -3.5 -5.08011 | AAAACTCGCAAAAAA GCCTC TCGTC AAGGC TGTAAATTGAACCAG TERM 3712 3499713 - 3499686 - g 73 -5.6 -4.49389 | gap 1 AGTGCACAAGGAAAA CCACTGGAAACGA CAT TCGTCTGC-GTGG CACCACTCACCGGGA YPTS_3159 3499422 - 3500108 + | DNA mismatch repair endonuclease mutH TERM 3713 3500214 - 3500194 - f 77 -8.3 -3.96298 | TAGTGATTAATTAAA GCGGGAT GTTCTCT ATCCCGC AGGTGCTTTATATCT TERM 3714 3500716 - 3500704 - g 73 -10.5 -3.1733 | overlap 3500702 3500701 CGCTGGATAAAAGCA CGCGG TTG CCGCG AAAAAATTATTTTAG TERM 3715 3501367 - 3501378 + G 73 -7.2 -4.16842 | overlap 3501351 GCTCTGGCCTTTGTG CGGC AACA GCCG TTTGTTGCCAGTACG YPTS_3160 3500479 - 3501519 + | aldo/keto reductase TERM 3716 3501574 - 3501559 - T 91 -11.8 -3.43203 | opp_overlap 3501554 3501553 CTATCATAATATGAA GGCCGC TGAT GCGGCC TTGAGGTTATTGACA TERM 3717 3501654 - 3501680 + T 70 -7.2 -3.74872 | gap 1, opp_overlap 3501642, overlap 3501653 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCCCTGCCT TERM 3718 3501737 - 3501766 + T 100 -16.5 -3.02511 | CGGGGCTTGTCAGCA TTCTGAAGGCCGC TGAT GCGGCCTTCAGGG TATTGACAAAGTGCC YPTS_3161 3502147 - 3501896 - | hypothetical protein TERM 3719 3502431 - 3502482 + G 75 -11.8 -2.69964 | gap 1, opp_overlap 3502451, overlap 3502448 TTTCAAAAGGCGATA TTTGTCAGCAGTCTGAA-GGATCTC CTT GAGATCCTTTCAGATGACAGACAAA TCATATCATTCAGGC YPTS_3162 3502226 - 3502459 + | hypothetical protein TERM 3720 3502448 - 3502464 + T 84 -10.9 -3.59979 | opp_overlap 3502451, overlap 3502431 TGTCAGCAGTCTGAA GGATCTC CTT GAGATCC TTTCAGATGACAGAC YPTS_3163 3503708 - 3502488 - | major facilitator transporter TERM 3721 3502906 - 3502885 - G 90 -10.1 -4.38712 | gap 1, overlap 3502886 TTTAGCGTCACAAAA CGGGCGGCGG CAC CCG-CGCCCA CCACAATCCCAATCG TERM 3722 3502905 - 3502886 - G 79 -11.4 -3.22906 | gap 1, overlap 3502885 TTAGCGTCACAAAAC GGGCGGCGG CAC CCG-CGCCC ACCACAATCCCAATC YPTS_3164 3505861 - 3503705 - | AMP-dependent synthetase and ligase TERM 3723 3505993 - 3505976 - R 100 -11.3 -6.11644 | GTACCTAAAAAAAAA CCTACGC ATCT GCGTAGG TCGGTGCAAATAAAA YPTS_3165 3508571 - 3506310 - | molybdopterin oxidoreductase YPTS_3166 3508861 - 3509883 + | LacI family transcription regulator YPTS_3167 3511142 - 3509880 - | diaminopimelate decarboxylase TERM 3724 3510886 - 3510900 + g 75 -11.4 -2.64155 | opp_overlap 3510883, overlap 3510883 3510882 CCCGGTTGATAACCC GCGTGC AAG GCACGC TCGATTTCACCCAAA YPTS_3168 3511358 - 3512299 + | LysR family transcriptional regulator YPTS_3169 3513456 - 3512296 - | major facilitator transporter YPTS_3170 3514749 - 3513841 - | LysR family transcriptional regulator YPTS_3171 3514856 - 3515743 + | beta-lactamase domain-containing protein YPTS_3172 3515856 - 3516491 + | hypothetical protein YPTS_3173 3518168 - 3516477 - | methyl-accepting chemotaxis sensory transducer TERM 3725 3516509 - 3516539 + g 100 -9.1 -4.84359 | overlap 3516511 CAATAGCAGCAATCG TGCTCTCCTTTGC TAATC GTAGAGGAGAGTA TTTTTCTACAGGTAA TERM 3726 3516511 - 3516537 + g 81 -9.5 -4.04397 | overlap 3516509 ATAGCAGCAATCGTG CTCTCCTTTGC TAATC GTAGAGGAGAG TATTTTTCTACAGGT YPTS_3174 3518796 - 3518323 - | hypothetical protein YPTS_3175 3519440 - 3518781 - | transcriptional regulator, CadC TERM 3727 3518884 - 3518900 + g 71 -6.7 -4.15703 | opp_overlap 3518882 3518884 TGCTGCTGATAAACA GATAAAA ACG TTTTATC TTGTTCTTTATCCAA YPTS_3176 3519724 - 3520089 + | hypothetical protein YPTS_3177 3520915 - 3520073 - | peptidase A24A domain-containing protein YPTS_3178 3521402 - 3520941 - | hypothetical protein YPTS_3179 3522589 - 3521399 - | general secretion pathway protein L YPTS_3180 3523529 - 3522573 - | general secretion pathway protein K YPTS_3181 3524134 - 3523538 - | general secretion pathway protein J YPTS_3182 3524417 - 3524127 - | type II secretion system protein I/J YPTS_3183 3525051 - 3524509 - | general secretion pathway protein H TERM 3728 3524619 - 3524589 - G 71 -7 -4.09685 | gap 1, overlap 3524608 CTTCATTTCTTAAAA CCA-AGGAGAAGT CCGAAT ACTCCTCCTCTGG AGAGAAAACCAATTG YPTS_3184 3525493 - 3525056 - | general secretion pathway protein G TERM 3729 3525290 - 3525273 - G 76 -9.9 -3.76224 | GGTTTAGTTACTAAA GCAGCAA TGCC TTGCTGC TCGGTCGGATAATCC YPTS_3185 3526715 - 3525513 - | type II secretion system protein YPTS_3186 3528213 - 3526702 - | type II secretion system protein E TERM 3730 3527774 - 3527784 + g 80 -4 -5.24129 | opp_overlap 3527774 CCATCAATACGAAAT CTTA CAG TAAG TTTTTTATCGAAAGA YPTS_3187 3530132 - 3528210 - | general secretion pathway protein D TERM 3731 3530105 - 3530090 - G 90 -2.6 -5.8187 | gap 1, opp_overlap 3530090, overlap 3530091 GAGTGAATAAAAAAA TC-ATCC CAT GGATAGA TTTAATTCCTTTGCC YPTS_3188 3530716 - 3530213 - | general secretion pathway protein C TERM 3732 3530683 - 3530693 + g 85 -5.4 -5.30189 | overlap 3530685 GATTACAGTTGAGTG TCCT AAA AGGA TTTTTTAGTCTTATC YPTS_3189 3531200 - 3530784 - | putative transcriptional regulator, CadC YPTS_3190 3532698 - 3531943 - | carbonic anhydrase YPTS_3191 3533193 - 3533381 + | hypothetical protein YPTS_3192 3533984 - 3534934 + | hypothetical protein YPTS_3193 3535049 - 3537235 + | outer membrane autotransporter TERM 3733 3539540 - 3539560 + G 76 -9.1 -3.87149 | opp_overlap 3539548 3539549 CACTCATCACTAAGT GGCAAATAT GGC ATGTTTGCC TTTAAATTTGATGCG YPTS_3194 3537305 - 3540418 + | lyase catalytic TERM 3734 3540494 - 3540460 - T 79 -7.9 -4.33274 | gap 1, opp_overlap 3540464 3540465, overlap 3540462 3540465 GTTACATGATTAAAA CATGAC-TCAGGGCGC TTCG GCGCCCTGAGGTTATT GACAAAGTGCCCGCG TERM 3735 3540492 - 3540462 - T 86 -10.5 -3.76811 | gap 1, opp_overlap 3540464 3540465, overlap 3540460 3540465 TACATGATTAAAACA TGAC-TCAGGGCGC TTCG GCGCCCTGAGGTTA TTGACAAAGTGCCCG TERM 3736 3540464 - 3540489 + T 100 -14.7 -3.62046 | opp_overlap 3540462 3540460 3540465, overlap 3540465 CATGATTAAAACATG ACTCAGGGCGC TTCG GCGCCCTGAGG TTATTGACAAAGTGC TERM 3737 3540488 - 3540465 - T 100 -18.2 -2.96723 | opp_overlap 3540464 3540465, overlap 3540462 3540460 ATGATTAAAACATGA CTCAGGGCGC TTCG GCGCCCTGAG GTTATTGACAAAGTG TERM 3738 3540465 - 3540488 + T 100 -18.2 -2.77013 | opp_overlap 3540465 3540462 3540460, overlap 3540464 ATGATTAAAACATGA CTCAGGGCGC TTCG GCGCCCTGAG GTTATTGACAAAGTG TERM 3739 3540562 - 3540588 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3540551, overlap 3540557 3540563 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3740 3540563 - 3540589 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3540551, overlap 3540557 3540562 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3741 3540652 - 3540667 + T 100 -11.8 -4.91084 | TTGTCAGCAGTCTGC GGGCGC TTAG GCGCCC TTTTATTATTAGGTC TERM 3742 3540836 - 3540807 - T 100 -14.5 -3.44206 | gap 1 CAAGATCCACGATAA CCTCTTCCTGAGCA GAT TG-TCAGGAAGAGG AAGTCAGCCGTCGAT YPTS_3195 3542411 - 3540858 - | sulfatase YPTS_3196 3543251 - 3544027 + | DeoR family transcriptional regulator TERM 3743 3544387 - 3544361 - g 82 -10.2 -3.79747 | overlap 3544362 CCATTTAGGACCAAA CCGTTGGCAG CACTTGC CTGCCAACGA AGCCATGGCGCATGC TERM 3744 3544386 - 3544362 - g 76 -11.5 -2.87527 | overlap 3544361 CATTTAGGACCAAAC CGTTGGCAG CACTTGC CTGCCAACG AAGCCATGGCGCATG YPTS_3197 3544077 - 3545375 + | D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit TERM 3745 3545531 - 3545549 + G 72 -5.8 -4.41633 | overlap 3545528 3545532 CTGCATCAGGCATTA GCCGCGAG TAA CACGCGGA TTATTTTTACCGGTG YPTS_3198 3545372 - 3546538 + | AgaS family sugar isomerase YPTS_3199 3546556 - 3547053 + | PTS system mannose/fructose/sorbose family IIB subunit YPTS_3200 3547100 - 3547888 + | phosphotransferase system PTS sorbose-specific IIC subunit TERM 3746 3548123 - 3548104 - g 77 -6.4 -4.63218 | opp_overlap 3548103, overlap 3548106 CCGCGTTGAAGAAAA TCCACGGT AACA ACCGTGCA GATTTGGCGAAATCG YPTS_3201 3547878 - 3548768 + | PTS system mannose/fructose/sorbose family IID component YPTS_3202 3548854 - 3549294 + | PTS system fructose subfamily IIA component TERM 3747 3549675 - 3549685 + G 74 -6.8 -4.36914 | ACCCCCACCGCAACC CTGC TCG GCAG TTTTCTGGAGGGGCC YPTS_3203 3549297 - 3550463 + | N-acetylglucosamine-6-phosphate deacetylase YPTS_3204 3550659 - 3551414 + | 2-deoxy-D-gluconate 3-dehydrogenase TERM 3748 3552239 - 3552254 + G 77 -6.8 -4.63932 | opp_overlap 3552238 TCCTGCCCCAGAGAG CAGTGC AACA GCGCTG TTTTGTTACGGGCTG YPTS_3205 3551430 - 3552488 + | glycosy hydrolase family protein TERM 3749 3552557 - 3552584 + F 75 -10.6 -2.77013 | overlap 3552556 ATTCATTTTGTTGCA CTGGCGCACATC ACCT GATGTGCGTGAG GTTATTGACAAAGTG TERM 3750 3552658 - 3552684 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 3552647, overlap 3552653 3552659 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3751 3552659 - 3552685 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 3552647, overlap 3552653 3552658 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3752 3552748 - 3552767 + F 100 -12.2 -5.24531 | TTGTCAGCAGTCTGG CGCACATC ACCT GATGTGCG TTTTTTATAGGCGAT TERM 3753 3553232 - 3553220 - g 71 -6.3 -4.24404 | opp_overlap 3553219 3553220 ATGCAAACGGTAAAA CTGTT ACA AACAG CTTTCAAACCAACGG YPTS_3206 3552919 - 3554145 + | radical SAM domain-containing protein TERM 3754 3554357 - 3554343 - g 80 -4.2 -5.25803 | overlap 3554346 3554350 3554354 AATCTGGATAAAAAA GCACTA AGC CAGCGC CCAGTTCCCGTGCGC TERM 3755 3554405 - 3554431 + G 71 -6.6 -4.15044 | gap 1, opp_overlap 3554398, overlap 3554402 3554400 CAAGATGATCGATGC GGCACA-GCGG GCGATG CCGCATGTGTC TTTGTTGGCCAAAAA TERM 3756 3554711 - 3554695 - g 71 -6.5 -4.15565 | CCGATGAGGTCAAAA GCCGCGA TTA TCACGAC AACATGATCTCCGTC TERM 3757 3555729 - 3555711 - g 91 -11 -4.36903 | TGGATCAAAGATAAA CCCAAACC CGT GGCTTGGG GGCAAGATCGCTATC YPTS_3207 3554166 - 3555773 + | sulfatase YPTS_3208 3555801 - 3555899 + | hypothetical protein YPTS_3209 3555896 - 3557383 + | hypothetical protein YPTS_3210 3557494 - 3558348 + | tagatose bisphosphate family class II aldolase TERM 3758 3558546 - 3558517 - g 74 -9.9 -3.57792 | opp_overlap 3558526 GCACCTATTTTGAAA CGCCGATCAGCGC AGAT GCGCTGTTAAGCG ATCGTCTGGATCACC YPTS_3211 3558372 - 3558950 + | ThiJ/PfpI domain-containing protein YPTS_3212 3559201 - 3558920 - | hypothetical protein TERM 3759 3559076 - 3559102 + g 83 -13.1 -3.05844 | opp_overlap 3559082, overlap 3559078 3559082 ATAGCCAGTACCGTT GATGAACCGCA TGGTC TGCGGTTCGTC TCTTCGACTCCCCAA YPTS_3213 3560273 - 3559191 - | LacI family transcription regulator TERM 3760 3560217 - 3560243 + g 73 -8.8 -3.8691 | overlap 3560216 CACTCTTGATACCGT GCTAATCGAAAG ACC CGTTTGATTAGC TATTTCTTGTATTTT TERM 3761 3560530 - 3560512 - H 82 -3.2 -5.56264 | opp_overlap 3560512 TTGAAATATAAAAAA CTCAAT ATTATCA ATTGAG TATATTTTATATAGC TERM 3762 3561114 - 3561096 - g 70 -2.3 -5.00616 | overlap 3561099 3561101 TGGTTCCCGAAAAAA GAACGGC CCATT GCCGCTG GATGGGCTGGGGTGG TERM 3763 3561111 - 3561099 - g 75 -6.2 -4.61482 | overlap 3561096 3561101 TTCCCGAAAAAAGAA CGGC CCATT GCCG CTGGATGGGCTGGGG YPTS_3214 3560667 - 3561974 + | major facilitator transporter YPTS_3215 3562105 - 3564480 + | glycoside hydrolase family protein TERM 3764 3564526 - 3564501 - T 84 -9.7 -3.84017 | opp_overlap 3564503, overlap 3564503 TAATGTTAAATACAA GACGGACTTCC TGAT GGAAGCCCGTT TATTTTTGTACGGGT TERM 3765 3564524 - 3564503 - T 100 -12.3 -3.49634 | opp_overlap 3564503, overlap 3564501 ATGTTAAATACAAGA CGGACTTCC TGAT GGAAGCCCG TTTATTTTTGTACGG TERM 3766 3564503 - 3564524 + T 100 -10.1 -4.96501 | opp_overlap 3564503 3564501 ATGTTAAATACAAGA CGGACTTCC TGAT GGAAGCCCG TTTATTTTTGTACGG YPTS_3216 3565692 - 3564619 - | LacI family transcription regulator YPTS_3217 3565964 - 3567223 + | porin LamB type TERM 3767 3567402 - 3567427 + T 100 -16.3 -4.73108 | TCGGTTATTCTTCTA TGCTCACTACC CTTA GGTAGTGAGCA TTTTAGTTTTATACC TERM 3768 3567619 - 3567590 - T 76 -8 -4.20806 | opp_overlap 3567590 3567589 3567586, overlap 3567577 CACTTTAAAACCAAA TTGCTTTAAAGC CAAATT GCTTTAAAGCCA AATTGTGAGTTAAAA YPTS_3218 3567955 - 3567644 - | phosphotransferase system PTS EIIB protein TERM 3769 3568024 - 3568045 + r 73 -10.1 -2.9186 | opp_overlap 3568024 GTCGATGTAAAAAAA CGCCCACTC GGCT GAATGGGCG TGTATGGCATTCAGT TERM 3770 3568045 - 3568024 - R 100 -12.3 -5.47218 | opp_overlap 3568024 GTCGATGTAAAAAAA CGCCCACTC GGCT GAATGGGCG TGTATGGCATTCAGT YPTS_3219 3570127 - 3568067 - | glycoside hydrolase family 42 protein TERM 3771 3568248 - 3568214 - G 73 -7.8 -3.99324 | overlap 3568218 TTCTACCACGATAAA TTCACTCTCACCATCG GTA CGACGGTGAGCGGTAA CCCCATAAGGGAACT TERM 3772 3568244 - 3568218 - G 81 -13 -2.7242 | overlap 3568214 ACCACGATAAATTCA CTCTCACCATCG GTA CGACGGTGAGCG GTAACCCCATAAGGG TERM 3773 3568526 - 3568557 + g 73 -7.4 -4.15044 | gap 1, overlap 3568513 3568512 TGCAAGTCCTTGGAC TTGATTGCTCTCGCC ATC GGCCAGA-CAGTCAA TTTCTTCGGACCAGA TERM 3774 3568919 - 3568906 - G 78 -5.3 -4.8622 | TTTCCCAATCAAAAA TGATG GCAA CATCA GCGTCTACTTTACTT TERM 3775 3570156 - 3570176 + r 83 -11.9 -2.60571 | opp_overlap 3570152, overlap 3570155 ATAATAAATACTTGG TGTTGCCCA TAA TGGGCAACG ATTAATTAAAAACTT YPTS_3220 3571380 - 3570178 - | glycosyl hydrolase 53 protein YPTS_3221 3572236 - 3571385 - | binding-protein-dependent transport systems inner membrane component YPTS_3222 3573555 - 3572248 - | binding-protein-dependent transport systems inner membrane component TERM 3776 3572654 - 3572644 - G 77 -4.6 -4.87389 | CATGGCAAAAACAAA CGGG AAA CCCA GCCACGTCTGCATCA YPTS_3223 3574950 - 3573715 - | extracellular solute-binding protein TERM 3777 3575274 - 3575256 - H 87 -5.2 -5.50313 | opp_overlap 3575257 3575258, overlap 3575258 CATAAAATCAAAAAA CGCACCAC AGG GTGATGTG TGATGGCCCCCTGAC YPTS_3224 3575313 - 3576419 + | ABC transporter related TERM 3778 3576494 - 3576472 - f 73 -9.1 -3.46509 | overlap 3576466 GGTTAAGAATACCAA GCGGGTTTC CTGTT GAAGCCCGC TGAATATTAAGATAG YPTS_3225 3576948 - 3578456 + | ABC transporter related YPTS_3226 3578503 - 3579531 + | inner-membrane translocator TERM 3779 3579988 - 3579960 - g 79 -2.3 -5.52384 | overlap 3579963 CTTTTATGAAAAAAA CAATGCTACAAAC TCT GCTTGCTGCAACG CTGATACTTTCCTTT TERM 3780 3579985 - 3579963 - g 77 -4.8 -4.8487 | overlap 3579960 TTATGAAAAAAACAA TGCTACAAAC TCT GCTTGCTGCA ACGCTGATACTTTCC YPTS_3227 3579950 - 3580951 + | periplasmic binding protein/LacI transcriptional regulator TERM 3781 3580972 - 3580999 + F 100 -12.7 -3.57792 | opp_overlap 3580961 ATGATCGCTATCGCC CCCGGCAGCGG CAAAAT CTGCTGTCGGG TTTGAGGGTAAATCC YPTS_3228 3581730 - 3582248 + | hypothetical protein YPTS_3229 3582624 - 3583481 + | lipoprotein TERM 3782 3583488 - 3583500 + F 74 -4.8 -4.82901 | opp_overlap 3583483 AGCCAATAACCGTTT GGTG CTGCT CACC TTTTTATCAGAAGGG TERM 3783 3583639 - 3583615 - f 75 -8.6 -3.90762 | overlap 3583613 TAGCGGGCAAAAATA GGCTGACTGA TATTG TCACTCAGCC CCCCTTGACCAAAAT TERM 3784 3583678 - 3583691 + F 77 -3.9 -5.21709 | overlap 3583669 CCCAGTTCAACATTT TGATT TAAA AATCA TTTTTTGATATCCCC TERM 3785 3583803 - 3583821 + F 75 -7.4 -4.27861 | opp_overlap 3583793 3583796, overlap 3583804 TAAAAGCACGCGGGA TGCGTTGC GCA GTAACGCG TTTTAGATATATCTT TERM 3786 3584515 - 3584491 - g 76 -9.4 -3.80733 | gap 1 CTCACGCCAGAACAA GTAGCG-CGTA TTAA TACGGCGCTAC TGGCTGCGGTAGACA YPTS_3230 3583924 - 3584604 + | PadR-like family transcriptional regulator YPTS_3231 3584604 - 3584924 + | hypothetical protein YPTS_3232 3585289 - 3585023 - | PAAR repeat-containing protein YPTS_3233 3586324 - 3585545 - | hypothetical protein YPTS_3234 3587696 - 3586929 - | hypothetical protein TERM 3787 3587447 - 3587458 + gr 72 -5.8 -4.36914 | overlap 3587443 GTGTCAGCCTAGAGC TGGG TAGC CCCA TTTTCTGAAACCAGG YPTS_3235 3589825 - 3587666 - | hypothetical protein TERM 3788 3588294 - 3588304 + gr 75 -3.2 -5.11836 | TGCTGTTGTAAAAGT GCTT TTT GAGC TTTTGTTTTGAGTAT TERM 3789 3589147 - 3589131 - GR 72 -7.9 -3.76835 | CGGAACAACATATAA GTCGCTG TTT CTGCGAC CCATGCTTGAGAACT YPTS_3236 3590519 - 3590235 - | colicin D YPTS_3237 3590769 - 3590566 - | hypothetical protein YPTS_3238 3591339 - 3591142 - | hypothetical protein TERM 3790 3591177 - 3591194 + g 71 -2.7 -4.93877 | gap 1, overlap 3591179 GCTTGTAGGCTTCTT TG-GCTTC GTT GAGGCTCA TTTTATTTGCTCCAC YPTS_3239 3592868 - 3591336 - | S-type pyocin domain-containing protein TERM 3791 3591614 - 3591633 + g 80 -6.5 -4.7373 | TTTTCTTTCTTTCAG TCCAGAT AGGATC ATCTGGA TTTTTACTGAGATAG YPTS_3240 3594516 - 3593374 - | filamentation induced by cAMP protein Fic YPTS_3241 3594785 - 3595150 + | hypothetical protein YPTS_3242 3595163 - 3595843 + | hypothetical protein TERM 3792 3595924 - 3595937 + F 75 -3.1 -5.18866 | opp_overlap 3595924, overlap 3595928 TGACCTAAAACGACA GGAAT AAAG GTTCC TTTTATTTATTTGCC TERM 3793 3596160 - 3596109 - g 74 -6.6 -4.40993 | gap 1, opp_overlap 3596144 TATAAATTATTAAAA CAAAAGCGCT-TCCCGCCACC GATAAAAATAG GGGGGCGGGCTATCGCTTTTG TTGAAAGTGAGGTGA YPTS_3243 3596025 - 3596225 + | phage transcriptional regulator, AlpA YPTS_3244 3596391 - 3596239 - | hypothetical protein YPTS_3245 3596710 - 3596384 - | hypothetical protein TERM 3794 3596438 - 3596451 + g 78 -5.2 -5.00616 | GCCTTTCCCTTTCCA CGGC ATATAA GCCG TTTTTTGCACCACAA TERM 3795 3596802 - 3596764 - H 74 -6.6 -4.2828 | opp_overlap 3596768, overlap 3596768 3596788 GCGGATGTATCAAAA GGAACGCCCCGACATCAC TCA ATACTGCCGGGGCGTTTA TCCACCACGGAGCAA TERM 3796 3596798 - 3596768 - H 93 -11.8 -3.72073 | opp_overlap 3596768, overlap 3596764 3596788 ATGTATCAAAAGGAA CGCCCCGACATCAC TCA ATACTGCCGGGGCG TTTATCCACCACGGA TERM 3797 3599051 - 3599065 + G 73 -7 -4.17296 | overlap 3599052 CGCTGGCAATTTCCC CGCGCG CCC CGCGCA TTTATCTGTATCACG TERM 3798 3599052 - 3599064 + G 73 -10.5 -3.09896 | overlap 3599051 GCTGGCAATTTCCCC GCGCG CCC CGCGC ATTTATCTGTATCAC TERM 3799 3599202 - 3599191 - g 79 -2.2 -5.5208 | GCAGAATACAAAAAA GCCA GAAC TGAC AAAGGGTTCCGCTAC YPTS_3246 3597010 - 3599301 + | P4 alpha zinc-binding domain-containing protein TERM 3800 3599407 - 3599373 - T 100 -10.2 -5.26155 | opp_overlap 3599373 ATACAAAGATAAAAA CTGACTGAATAGTT TACTAAT AACTGTTCAGTCAG TATTCAGAGGTGTTC TERM 3801 3599373 - 3599407 + T 93 -12.4 -3.04248 | opp_overlap 3599373 ATACAAAGATAAAAA CTGACTGAATAGTT TACTAAT AACTGTTCAGTCAG TATTCAGAGGTGTTC TERM 3802 3599483 - 3599452 - T 71 -4.4 -4.7497 | GGCAGGTATTAAAAA CTGAACACCTGAAC AGTT GCTGAAGAGTTCAG CGGGGAGTATTCAGA YPTS_3247 3600099 - 3599701 - | XRE family transcriptional regulator YPTS_3248 3600272 - 3600099 - | hypothetical protein TERM 3803 3600434 - 3600448 + r 70 -7.2 -3.87075 | opp_overlap 3600432 3600434, overlap 3600437 TCCACTTAATAAATA TAACCT AGT AGGTTA TTTATAGCAAGTCAT YPTS_3249 3600921 - 3600559 - | XRE family transcriptional regulator YPTS_3250 3601244 - 3600984 - | plasmid stabilization system protein TERM 3804 3601507 - 3601534 + H 80 -10.5 -3.54424 | GGTCAGATATAGTGC CCCCGCAGCGG CAAAAT CCGTTGCTGGG TTTAGCAGCCTGAGA YPTS_3251 3601754 - 3601852 + | hypothetical protein YPTS_3252 3601842 - 3602027 + | hypothetical protein TERM 3805 3602065 - 3602038 - T 89 -12.2 -3.39429 | opp_overlap 3602044, overlap 3602044 AATAATCTCTAAATA CAAAAAGGCATC GTGA GATGCCTTTTTA ATTCCCCACACCACC TERM 3806 3602044 - 3602059 + T 100 -9 -4.8622 | opp_overlap 3602038 3602044 CTCTAAATACAAAAA GGCATC GTGA GATGCC TTTTTAATTCCCCAC TERM 3807 3602059 - 3602044 - T 100 -9 -5.19879 | opp_overlap 3602044, overlap 3602038 CTCTAAATACAAAAA GGCATC GTGA GATGCC TTTTTAATTCCCCAC YPTS_3253 3603152 - 3602169 - | integrase family protein YPTS_3254 3603518 - 3603219 - | XRE family transcriptional regulator YPTS_3255 3603632 - 3603904 + | putative bacteriophage Cox protein YPTS_3256 3603901 - 3604113 + | phage-like protein YPTS_3257 3604110 - 3604421 + | hypothetical protein TERM 3808 3604785 - 3604766 - g 83 -5 -5.22289 | TATCAAACAGAAAAA TGCTACCA CTAT CGATAGCA TCACAATATACACGC YPTS_3258 3604488 - 3604832 + | hypothetical protein YPTS_3259 3605039 - 3604836 - | hypothetical protein TERM 3809 3605139 - 3605125 - H 100 -8.5 -4.93898 | overlap 3605126 3605127 ACAGTACCACAAAAA CGCGC GCCGG GCGCG ATGCAGTACCCCGGC TERM 3810 3605139 - 3605127 - H 74 -10.5 -2.7243 | overlap 3605125 3605126 AGTACCACAAAAACG CGCGC CGG GCGCG ATGCAGTACCCCGGC YPTS_3260 3605182 - 3605403 + | phage-like protein YPTS_3261 3605412 - 3605762 + | phage-like protein YPTS_3262 3605834 - 3606070 + | phage-like protein TERM 3811 3606439 - 3606412 - g 71 -4.8 -4.53303 | gap 1, opp_overlap 3606416 3606416, overlap 3606417 GAGTTTGACAGAAAA GAAGC-CCTGTGC GTA GCCCAGGCGTTTC AAGAGACAGCACAAT YPTS_3263 3606070 - 3606735 + | hypothetical protein YPTS_3264 3606745 - 3607446 + | exonuclease RNase T and DNA polymerase III YPTS_3265 3607443 - 3607796 + | phage-like protein TERM 3812 3607840 - 3607868 + G 82 -10.3 -3.92324 | gap 1 CCCGCCCCAACCTTA CCCCGGCA-GCG ATGAAA CGTTTGCCGGGG TTTACTCTTGGAACA TERM 3813 3610098 - 3610076 - g 74 -11.2 -2.91322 | overlap 3610073 AGATTGCGGAAATTA CCGCCGCCGA GGC TCGGCGGTGA CGACGAGGACGTAAA YPTS_3266 3607793 - 3610288 + | replication gene A YPTS_3267 3610633 - 3610304 - | transcriptional activator Ogr/delta YPTS_3268 3611434 - 3610637 - | PBSX family phage portal protein YPTS_3269 3613592 - 3611415 - | hypothetical protein TERM 3814 3612486 - 3612473 - G 70 -8.1 -3.79906 | opp_overlap 3612483 CCAGGTCGATAAGAA TGGCG GCGT CGCCA TAGACTTTGGCCTTT TERM 3815 3612710 - 3612739 + g 71 -2.9 -4.88407 | gap 2 AAGTACGGCGTAAAT GGGTGTGCGTGGC TATCGC GCC-TGCA-ACCC TTTTTAATTCGCTAA TERM 3816 3613019 - 3613037 + g 79 -11 -3.56643 | opp_overlap 3613009 ATGCAGCGTACCAGG TCGCGCCA ATT TGGCGTGA TTTCAGCCATATCCG TERM 3817 3613270 - 3613282 + g 74 -2.7 -5.13473 | opp_overlap 3613270 GCCGCTGCCTCCAAA TTCAT GGC GTGAA TTTTTTCAGTGTGCT TERM 3818 3614639 - 3614625 - g 77 -2.9 -5.24129 | GCTGCTGATAAAAAA TTCAA CAAAC TTGAA CAAGTCACCACCAAA YPTS_3270 3613770 - 3614705 + | capsid scaffolding YPTS_3271 3614788 - 3615954 + | P2 family phage major capsid protein TERM 3819 3616592 - 3616574 - g 90 -8.9 -4.62471 | TCCAACGCTGAAAAA GGCCAAT GAATT ATTGGCC CAGGCGGAAGGATTT TERM 3820 3616693 - 3616677 - g 73 -5 -4.77173 | GCTTTAGAAAAGAAA GCCGAG GAACA CGCGGC AATAAACACCGCCCC YPTS_3272 3615969 - 3616712 + | small terminase subunit TERM 3821 3616730 - 3616700 - f 73 -7.4 -4.16284 | overlap 3616702 ACACGCGGCAATAAA CACCGCCCCCTGAC CCT GTCGCGGGGCTGTA CCGTCCCCCGGCCAG TERM 3822 3616728 - 3616702 - f 70 -7.8 -3.67877 | overlap 3616700 ACGCGGCAATAAACA CCGCCCCCTGAC CCT GTCGCGGGGCTG TACCGTCCCCCGGCC TERM 3823 3617125 - 3617111 - g 83 -4.2 -5.47159 | opp_overlap 3617122 GCTCAATATAAAAAA GCGG TTTATGC CCGC GCCAAGGCGGATTTG YPTS_3273 3616832 - 3617284 + | head completion protein YPTS_3274 3617281 - 3617787 + | phage-like protein TERM 3824 3618142 - 3618130 - gf 79 -6.9 -4.58424 | overlap 3618109 3618131 TACGACCACAGAAAA CGCCG CGT CAGCG GCTAAACGGCAAAAT TERM 3825 3618144 - 3618131 - gf 74 -9.5 -3.34332 | overlap 3618109 3618130 ACGACCACAGAAAAC GCCGC GTCA GCGGC TAAACGGCAAAATGG YPTS_3275 3617747 - 3618448 + | phage-like protein TERM 3826 3619253 - 3619265 + G 75 -7.7 -4.21275 | GTCGCACACTGGACG TCACC GGC GGTGA TTTTCAATCAATTGA YPTS_3276 3618445 - 3619611 + | hypothetical protein TERM 3827 3620008 - 3620031 + G 71 -4.6 -4.53303 | gap 1, overlap 3620011 TGACCAGCCCGGATT TTGTGCACATC GAC GGTGTGC-CGA TTTTATCTGAGAGTG YPTS_3277 3619614 - 3620069 + | hypothetical protein YPTS_3278 3620079 - 3620381 + | putative phage P2 holin-like protein TERM 3828 3620617 - 3620601 - g 73 -2.2 -5.00895 | gap 1, overlap 3620603 TGTATCAGACAAAAA CAGAGGC CTAT GCCCC-G CTGGGTGAGTACTGG YPTS_3279 3620378 - 3620719 + | hypothetical protein YPTS_3280 3620719 - 3621093 + | hypothetical protein TERM 3829 3621247 - 3621228 - g 79 -2.2 -5.48213 | gap 1, overlap 3621230 GACGCAAAATAAAAA TG-TGATCA CAC TGACCATCA ACGGTAACGCGGTGC YPTS_3281 3621208 - 3621483 + | hypothetical protein YPTS_3282 3621528 - 3621707 + | hypothetical protein YPTS_3283 3621709 - 3623685 + | TP901 family phage tail tape measure protein YPTS_3284 3623682 - 3624011 + | hypothetical protein TERM 3830 3624702 - 3624727 + G 74 -3.1 -5.06816 | overlap 3624704 3624705 GACTGATTGCCGGCA TTGCCGGTCTG ACCA CTGACCGGATA TTTTTCTTGCACGAT YPTS_3285 3624008 - 3625192 + | putative bacteriophage protein YPTS_3286 3625185 - 3625808 + | putative bacteriophage protein TERM 3831 3626919 - 3626886 - g 83 -4.7 -5.252 | opp_overlap 3626889, overlap 3626888 3626889 GATCCCCATAAAAAA TATTTGCTGATAAAA AATC TTTTATCAGCAATCG TTGAAATGGGGCCAG TERM 3832 3626917 - 3626888 - g 83 -9.5 -4.25873 | opp_overlap 3626889, overlap 3626886 3626889 TCCCCATAAAAAATA TTTGCTGATAAAA AATC TTTTATCAGCAAT CGTTGAAATGGGGCC TERM 3833 3626916 - 3626889 - g 84 -13 -3.14801 | opp_overlap 3626889, overlap 3626888 3626886 CCCCATAAAAAATAT TTGCTGATAAAA AATC TTTTATCAGCAA TCGTTGAAATGGGGC TERM 3834 3626889 - 3626916 + G 81 -13 -2.73364 | opp_overlap 3626889 3626888 3626886 CCCCATAAAAAATAT TTGCTGATAAAA AATC TTTTATCAGCAA TCGTTGAAATGGGGC TERM 3835 3627251 - 3627239 - g 78 -5.5 -4.87892 | TGTCAATAAAATAAA CACAC ATG GCGTG GTTGCGCTGGCGCGC YPTS_3287 3625818 - 3627413 + | tail fiber repeat 2-containing protein YPTS_3288 3627413 - 3627931 + | tail assembly chaperone gp38 TERM 3836 3627998 - 3627966 - g 71 -4.8 -4.60041 | opp_overlap 3627968 3627969 3627986, overlap 3627967 3627968 ACGCATTCCGAAAAA TCTGGCCCCGGTC-AG CTG CTCGACCGTGGCC-GT TCATCCTTGGTCGTT TERM 3837 3627968 - 3627997 + G 78 -10.7 -3.29364 | gap 1, opp_overlap 3627967 3627968 3627966, overlap 3627969 3627986 GCATTCCGAAAAATC TGGCCCCGGTC-AG CTG CTCGACCGTGGCCG TTCATCCTTGGTCGT TERM 3838 3627969 - 3627996 + G 78 -12 -2.57136 | gap 1, opp_overlap 3627967 3627968 3627966, overlap 3627968 3627986 CATTCCGAAAAATCT GGCCCCGGTC-AG CTG CTCGACCGTGGCC GTTCATCCTTGGTCG YPTS_3289 3627910 - 3628638 + | putative bacteriophage protein TERM 3839 3628696 - 3628684 - g 77 -4.1 -5.0133 | TATTCCGCTAAAAAA CATCA TTG TGACG CTCTCTATGTCAATA YPTS_3290 3628631 - 3629185 + | hypothetical protein TERM 3840 3630285 - 3630259 - g 78 -12.2 -2.52464 | overlap 3630277 CCCGCCGTCAAGCCA GGCGAGCAGTTG CAG CAACAGCGCGCC GGCGTCAGTCAGCGC YPTS_3291 3629182 - 3630903 + | hypothetical protein TERM 3841 3631580 - 3631565 - g 91 -11.8 -4.26003 | opp_overlap 3631564 3631561 ACAACATGCAACAAA GCCCCG CAAG CGGGGC CATGTTTACTCAGTG YPTS_3292 3631258 - 3631620 + | hypothetical protein TERM 3842 3631616 - 3631641 + T 88 -10.7 -3.90425 | opp_overlap 3631616 AATGTGTGGACACCA CTTGAAATTAA TCCT TTAATTTCAAG TTGTTAGTTTAAATA TERM 3843 3631641 - 3631616 - T 76 -10.7 -2.62515 | opp_overlap 3631616 AATGTGTGGACACCA CTTGAAATTAA TCCT TTAATTTCAAG TTGTTAGTTTAAATA YPTS_3293 3632940 - 3631726 - | integrase family protein TERM 3844 3633344 - 3633329 - R 100 -11.8 -4.7497 | CTGACTCAGTAAAAA GGGCGC CGTA GCGCCC TGAGGAATTTATCGT YPTS_3294 3634890 - 3633373 - | lysyl-tRNA synthetase YPTS_3295 3635832 - 3634900 - | peptide chain release factor 2 TERM 3845 3635862 - 3635884 + r 100 -13.4 -4.0802 | CGGGTTCATTCCAGA CGTCGGGCTG TTC CAGCTCGGCG TTTACTTCTTCCAGT YPTS_3296 3637910 - 3636177 - | single-stranded-DNA-specific exonuclease RecJ TERM 3846 3636918 - 3636928 + g 71 -4.6 -4.65078 | CATACCCTGTTCTAT CTCG CGC CGGG TTTTATTCAAGGTGT TERM 3847 3637655 - 3637630 - G 79 -11.1 -3.56643 | overlap 3637631 CCCATACTGCGCAAA GCCAGCACCGC CAAC GCGGTACTGGT CGCGCCGTCAGCATC TERM 3848 3637654 - 3637631 - G 90 -14.6 -2.73771 | overlap 3637630 CCATACTGCGCAAAG CCAGCACCGC CAAC GCGGTACTGG TCGCGCCGTCAGCAT YPTS_3297 3638633 - 3637917 - | thiol:disulfide interchange protein DsbC YPTS_3298 3639563 - 3638664 - | tyrosine recombinase XerD YPTS_3299 3639652 - 3640188 + | flavodoxin TERM 3849 3640224 - 3640252 + T 84 -9.7 -3.84825 | opp_overlap 3640229, overlap 3640225 TACATCAGAGCTCAA TTTAACGGGCA CCCGATA TGCCCGTTAAG TTTAGTCTAGCTGCG TERM 3850 3640225 - 3640251 + T 79 -11 -2.90573 | opp_overlap 3640229, overlap 3640224 ACATCAGAGCTCAAT TTAACGGGCA CCCGATA TGCCCGTTAA GTTTAGTCTAGCTGC YPTS_3300 3641751 - 3640273 - | inner membrane CreD family protein TERM 3851 3641284 - 3641265 - G 71 -9.2 -3.55444 | CGCTGAGTGGCGAAA TGCGCTGG ATAC CCCGCGCA TCACTCAGTGCCAGC YPTS_3301 3643269 - 3641851 - | integral membrane sensor signal transduction histidine kinase YPTS_3302 3643992 - 3643294 - | two component transcriptional regulator YPTS_3303 3644140 - 3643961 - | hypothetical protein TERM 3852 3644232 - 3644242 + r 70 -5.4 -4.42386 | GATTTCCCCCTGACA GGAT TTA ATCC TTTTCTGGCTGCGGA YPTS_3304 3644664 - 3644398 - | hypothetical protein TERM 3853 3644783 - 3644764 - H 78 -10 -3.54382 | overlap 3644747 CGTTAATATAACTAA CGGGAATG TTAC CACTCCCG GGATAGGGGGTTAAG TERM 3854 3644807 - 3644821 + H 80 -2.8 -5.52384 | opp_overlap 3644807 3644809, overlap 3644809 GGTTAAGGTACTAAA TACACT GCA AGTGCA TTTTTTTAATCGCCC TERM 3855 3645374 - 3645363 - g 73 -7.2 -4.14739 | GTAGCCAGGCCAAAA CCGC GCTG GCGG AAATCTTTACTGAAT YPTS_3305 3644981 - 3645973 + | hypothetical protein TERM 3856 3645988 - 3645978 - T 73 -5.4 -4.66814 | AAGATAAATAATAAA GAGT TCT ACTC TATAGAGACCGGTTA TERM 3857 3645989 - 3646016 + T 100 -15 -5.23292 | opp_overlap 3645995 3645997 TAAAGAGTTCTACTC TATAGAGACCGG TTAA CCGGTCTCTGTA TTTTGTTTTATATCA TERM 3858 3646010 - 3645995 - T 75 -10.4 -2.89564 | opp_overlap 3645989, overlap 3645997 GTTCTACTCTATAGA GACCGG TTAA CCGGTC TCTGTATTTTGTTTT YPTS_3306 3646543 - 3646046 - | membrane protein YPTS_3307 3647519 - 3646818 - | hemolysin III family channel protein YPTS_3308 3648824 - 3647721 - | hypothetical protein YPTS_3309 3651078 - 3648928 - | YadA domain-containing protein TERM 3859 3650579 - 3650565 - G 70 -10 -3.1506 | AAAGCTGGCTACCAA CTACCG CAT CGGTAG AGGTAGATGAAATCG TERM 3860 3651019 - 3651004 - G 71 -4.8 -4.49981 | opp_overlap 3651004 CAGACCACGATAAAA CTTTAT GTTC ATAAAG TAATTAAAACAAACA TERM 3861 3651248 - 3651235 - R 70 -5.3 -4.47183 | overlap 3651241 TATTATCTAAACAAA CCATA ACAT TATGG AATGTCGGCTAGTTG YPTS_3310 3652574 - 3652137 - | hypothetical protein TERM 3862 3652835 - 3652809 - R 72 -7.2 -3.9749 | gap 1, opp_overlap 3652818, overlap 3652810 3652826 AGGCAGAAGAGTAAA GCGTCCGCGCC AGAGAA GGCGCGG-CTC GAGCCTACATGGATG TERM 3863 3652910 - 3652935 + r 82 -8.2 -4.26903 | opp_overlap 3652909 3652910, overlap 3652914 CACTTTGTCAATAAC CTCAGGGCCG CTTTCA CGGCCCTTGG TTTTGCTCAGATGAG TERM 3864 3652914 - 3652931 + r 80 -9.8 -3.71672 | opp_overlap 3652909 3652910, overlap 3652910 TTGTCAATAACCTCA GGGCCG CTTTCA CGGCCC TTGGTTTTGCTCAGA YPTS_3311 3655831 - 3652952 - | glycine dehydrogenase TERM 3865 3656012 - 3656037 + r 71 -9 -3.23979 | overlap 3656006 TTTAACCTACTCGGC GTCAGGGCCA ATAAAA TGGCCCTCAC TTGAGTTACTCTTCA YPTS_3312 3656429 - 3656043 - | glycine cleavage system H protein YPTS_3313 3657595 - 3656498 - | glycine cleavage system T protein TERM 3866 3657752 - 3657742 - R 75 -8.2 -3.76167 | opp_overlap 3657741, overlap 3657740 CCATAAGCTAAAATA GGCG AGG CGCC CTCTTCAGGCGACAA YPTS_3314 3658327 - 3658112 - | hypothetical protein YPTS_3315 3659636 - 3658293 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YPTS_3316 3660864 - 3659686 - | 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPTS_3317 3662229 - 3660916 - | peptidase M24 TERM 3867 3661385 - 3661371 - G 76 -9.2 -3.91032 | opp_overlap 3661367 3661372, overlap 3661372 GAACGATGTCATAAA CCGCCC GCT GAGCGG GGGTAAATTTGCCAT YPTS_3318 3662895 - 3662317 - | yecA family protein YPTS_3319 3663232 - 3663561 + | hypothetical protein TERM 3868 3664059 - 3664071 + G 80 -9.1 -4.17516 | AATCCAGCAAGCTCA CACGG TAG CCGTG TTTCTCTCCTTTGAC YPTS_3320 3663907 - 3664503 + | 5-formyltetrahydrofolate cyclo-ligase TERM 3869 3664556 - 3664530 - T 100 -22.4 -6.02914 | TCGAGATAAAAAAAA CACCGGGGATCC TAT GGATCCCCGGTG TCAGACTGCTGACAA TERM 3870 3664645 - 3664619 - T 72 -7.2 -3.9749 | gap 1, opp_overlap 3664628, overlap 3664620 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG TERM 3871 3664724 - 3664750 + T 88 -10.8 -3.8901 | opp_overlap 3664720 3664719 TTGTCAATAACCTCA CACCTGAGATCC TAT GGATCCCAGGCG TTTAATCATTTCAGG YPTS_3321 3666009 - 3664768 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 3872 3664814 - 3664824 + g 77 -6.8 -4.63542 | GGAATGGCCTTCATC GCCT GCA AGGC TTTTTCCGCATTATC TERM 3873 3666312 - 3666276 - R 71 -2.2 -5.22039 | overlap 3666267 TTCAAAGGCAAAAAA TTATCAGGGTGAAGCC AAATA AACGACACCCTGAAAA ATTTTAGCCAATCAC YPTS_3322 3666972 - 3666316 - | ribose 5-phosphate isomerase YPTS_3323 3667314 - 3668222 + | LysR family transcriptional regulator TERM 3874 3668217 - 3668249 + T 71 -4.9 -4.64676 | GACTCGTTTATTGGG CAGTAGCTGTTTA TGTTTAC TGAGCAGCAACTG TTTTATTGGCAGTAG YPTS_3324 3669033 - 3668233 - | hypothetical protein TERM 3875 3668797 - 3668812 + g 77 -6.8 -4.64766 | AAAGTATTGCGCGAC GCGGGT ATCG ACCTGC TTTTTGGCATCTGCA YPTS_3325 3669819 - 3669202 - | L-lysine exporter TERM 3876 3669371 - 3669351 - G 73 -7.5 -4.30001 | overlap 3669348 CAAAAAACCAAACAA TAGAGGCCG TGA CCGCCCCTA AAGCAAACCAAGGGC TERM 3877 3670046 - 3670031 - R 85 -7.5 -4.7497 | opp_overlap 3670031 CCGAGCGAGTAAAAA CGGGC ACAGAG GCCCG TTTAATCTATTTACC TERM 3878 3670031 - 3670046 + r 72 -7.5 -3.97308 | opp_overlap 3670031 CCGAGCGAGTAAAAA CGGGC ACAGAG GCCCG TTTAATCTATTTACC YPTS_3326 3670951 - 3670082 - | MscS mechanosensitive ion channel TERM 3879 3670402 - 3670373 - G 74 -10.7 -2.79679 | overlap 3670363 3670362 3670360 AATATCGGCATCATA TGCCACACCGACA ATCA TGTCGGTACGGCG GTTCGGCTCGCGGCT TERM 3880 3670986 - 3670972 - R 100 -7.8 -5.26316 | CCATCCTACAAAAAA GCTCCC TAC AGGAGC AATTACGCCAAAAAA TERM 3881 3671023 - 3671004 - R 93 -4.2 -5.78622 | overlap 3671015 TTACGCCAAAAAAAA TCACCATC TAAC GCTGGCGA CTCTAGCCAACGGCC TERM 3882 3671163 - 3671176 + r 78 -9.5 -3.58343 | opp_overlap 3671163 TCAGCAACGAAAAAA GGCCC CGTA GGGCC TTTCAGACTGCTGAC TERM 3883 3671176 - 3671163 - R 100 -9.5 -5.30155 | opp_overlap 3671163 TCAGCAACGAAAAAA GGCCC CGTA GGGCC TTTCAGACTGCTGAC TERM 3884 3671267 - 3671241 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 3671250, overlap 3671242 3671257 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3885 3671268 - 3671242 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 3671250, overlap 3671241 3671257 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3886 3671368 - 3671341 - R 100 -18.6 -3.62046 | opp_overlap 3671348, overlap 3671348 GCACTTTGTCAATAA CCTAAAAGGCCC CGTA GGGCCTTTTAGG TCAGTCCGAACAGAC TERM 3887 3671348 - 3671361 + r 85 -9.5 -4.19817 | opp_overlap 3671348 3671341 GTCAATAACCTAAAA GGCCC CGTA GGGCC TTTTAGGTCAGTCCG TERM 3888 3671361 - 3671348 - R 88 -9.5 -4.36127 | opp_overlap 3671348, overlap 3671341 GTCAATAACCTAAAA GGCCC CGTA GGGCC TTTTAGGTCAGTCCG YPTS_3327 3672468 - 3671389 - | fructose-bisphosphate aldolase, class II YPTS_3328 3673751 - 3672588 - | phosphoglycerate kinase TERM 3889 3672829 - 3672844 + g 78 -7.6 -4.31329 | opp_overlap 3672825 AACACACCAACCGGA CCATTC CACA GAATGG TTTTGGCATTTTTCA TERM 3890 3673205 - 3673223 + g 100 -16 -3.56568 | opp_overlap 3673192 3673199 3673197 TAGCAACCATTGGAC GCGCTGGG TTA CCCAGCGC TTTACCCAATGCTTC YPTS_3329 3674870 - 3673854 - | D-erythrose-4-phosphate dehydrogenase TERM 3891 3674953 - 3674974 + r 73 -5.8 -4.42653 | opp_overlap 3674954, overlap 3674954 3674955 ATCGTATTATCACAA TTCGGCCA TAATAC TGGCCGGG TTTTCTCGGTGGGAT TERM 3892 3675068 - 3675058 - R 70 -5.4 -4.49344 | overlap 3675064 3675065 AAAGTCATGATAAAA GGAA TAT TTCC CTGAAAAAGGGCACA TERM 3893 3675126 - 3675111 - R 100 -10.4 -5.82316 | opp_overlap 3675111 ATTAGTCAAAAAAAA GACCGC AAAA GCGGTC TTTTAACAGGTGCAT TERM 3894 3675111 - 3675126 + r 91 -10.4 -4.09864 | opp_overlap 3675111 ATTAGTCAAAAAAAA GACCGC AAAA GCGGTC TTTTAACAGGTGCAT TERM 3895 3675189 - 3675216 + r 75 -5.6 -4.58663 | TGCAGTATTGATAAC GTCGTTGCCTGT TTTA ACAGTTAATGAC TTTTTAACGGCTAAT YPTS_3330 3677261 - 3675267 - | transketolase TERM 3896 3677435 - 3677425 - H 71 -4.6 -4.63218 | TTGGGGTGAACAAAA GCAG CCA CCGC ACAGCGACAAACCAT TERM 3897 3678355 - 3678341 - g 88 -7 -5.0133 | GATTTGCTGAAAAAA CGGGGC ATT GACCCG AACGGTCTGGTAACC YPTS_3331 3677735 - 3678487 + | peptidase M48 Ste24p TERM 3898 3678514 - 3678539 + T 73 -8.9 -3.52102 | opp_overlap 3678516, overlap 3678518 3678534 AGTCTCTTATCAATG CAGACGCCCCA CTGT TGGGGCGTGAG TTCTGTAGCTGACGT TERM 3899 3678537 - 3678516 - T 70 -10.1 -2.56596 | opp_overlap 3678514 3678518 3678534 TCTCTTATCAATGCA GACGCCCCA CTGT TGGGGCGTG AGTTCTGTAGCTGAC TERM 3900 3678518 - 3678535 + T 88 -12.7 -2.63555 | opp_overlap 3678516, overlap 3678514 3678534 TCTTATCAATGCAGA CGCCCCA CTGT TGGGGCG TGAGTTCTGTAGCTG YPTS_3332 3678912 - 3678592 - | Rieske (2Fe-2S) domain-containing protein TERM 3901 3679041 - 3679022 - R 100 -8.6 -5.40072 | opp_overlap 3679022 TCGCGCCGAAAAAAA GGACAAAC CTGA GTTTGCCC TTTAATCGATACTGA YPTS_3333 3681051 - 3679072 - | arginine decarboxylase YPTS_3334 3681440 - 3681297 - | hypothetical protein YPTS_3335 3682258 - 3683412 + | S-adenosylmethionine synthetase TERM 3902 3683488 - 3683458 - f 100 -11.8 -3.81516 | opp_overlap 3683458 TAAAACGATGAAGAA CCACCCTGTAAGCA ACA CGCTGGCAGGGTGG TTTATTTGTATGCAC TERM 3903 3683458 - 3683488 + F 100 -13.3 -4.62441 | opp_overlap 3683458 TAAAACGATGAAGAA CCACCCTGTAAGC AACAC GCTGGCAGGGTGG TTTATTTGTATGCAC YPTS_3336 3683605 - 3684117 + | protein of unknown function DUF335 SprT TERM 3904 3684452 - 3684433 - g 80 -4.2 -5.31456 | gap 1, opp_overlap 3684434, overlap 3684434 3684437 TCAACCCAGAAAAAA TGCAGCGCG AGC CGCGCGG-A TTGAATGGGAACATG TERM 3905 3684449 - 3684437 - g 72 -10.5 -2.96157 | opp_overlap 3684434, overlap 3684434 3684433 CCCAGAAAAAATGCA GCGCG AGC CGCGC GGATTGAATGGGAAC YPTS_3337 3684215 - 3684922 + | endonuclease I YPTS_3338 3684982 - 3685128 + | hypothetical protein TERM 3906 3685434 - 3685416 - g 74 -3.8 -4.9725 | opp_overlap 3685406 ACGGGCAGATAAAAA GAATCTGA TTG TCCGACTC GCTGAAGGGCAATGG YPTS_3339 3685237 - 3685968 + | hypothetical protein YPTS_3340 3685994 - 3686953 + | glutathione synthetase YPTS_3341 3687069 - 3687632 + | hypothetical protein YPTS_3342 3687632 - 3688054 + | Holliday junction resolvase YqgF TERM 3907 3688192 - 3688206 + F 95 -5.7 -5.59564 | GTTTAAAATATTGCA CACCT CTTGC AGGTG TTTTTTTACATTTAT YPTS_3343 3688234 - 3689118 + | N-carbamoylputrescine amidase YPTS_3344 3689122 - 3690237 + | agmatine deiminase TERM 3908 3690262 - 3690289 + T 100 -15 -4.20783 | AAATAAGCCGCCTGC TTGACCCGGATC ATCC GATCCGGGTTAA TTTATTGCATCACCT YPTS_3345 3691470 - 3690346 - | twitching motility protein TERM 3909 3691927 - 3691891 - g 81 -13.1 -2.87527 | opp_overlap 3691894, overlap 3691895 CAGTGATGAGCAAAG CAAAGCGGGGATTTC CTTGAGT GAACTCCCCGCCTTG GCTGACAGCATTAGT TERM 3910 3691923 - 3691895 - g 85 -10.3 -4.11623 | opp_overlap 3691894, overlap 3691891 GATGAGCAAAGCAAA GCGGGGATTTC CTTGAGT GAACTCCCCGC CTTGGCTGACAGCAT YPTS_3346 3691490 - 3692188 + | alanine racemase domain-containing protein YPTS_3347 3692321 - 3693142 + | pyrroline-5-carboxylate reductase YPTS_3348 3693282 - 3693467 + | hypothetical protein TERM 3911 3693671 - 3693703 + GF 72 -7.1 -3.93004 | AATACCCGCTGCTAT TACTGATTGATAGCG GAT CCTTATCACTCAGTA TTTATAACCTCTTGT YPTS_3349 3693430 - 3693984 + | protein of unknown function YGGT YPTS_3350 3693969 - 3694271 + | hypothetical protein YPTS_3351 3694371 - 3694964 + | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 3912 3695266 - 3695283 + G 71 -9.1 -3.56643 | opp_overlap 3695259, overlap 3695275 GAAGCCAACCCCGGA GCGGTCG AAGC CGATCGC TTTAGCGGCTATCAG YPTS_3352 3694957 - 3696087 + | oxygen-independent coproporphyrinogen III oxidase TERM 3913 3696223 - 3696250 + T 74 -9.8 -3.14961 | overlap 3696221 3696219 CAGTATGACTGGTGT CTCTGAGGGCAG AAAC CTGCCCTCAGCC TCTCTTCCTGCTAAT YPTS_3353 3705609 - 3696277 - | pore forming RTX toxin family protein TERM 3914 3703680 - 3703692 + g 74 -6.3 -4.32177 | TTATAATTTTTATTT GATCT GAC AGATC TTTCTTATAAAGTAG TERM 3915 3706001 - 3705973 - R 90 -11 -3.9749 | gap 1, opp_overlap 3705982, overlap 3705974 AGGCAGAAGAGTAAA GCG-TCCGCGCCA CGGA TGGCGCGGATCGA GCCTACATGGATGTT TERM 3916 3706000 - 3705974 - R 100 -14.5 -2.97771 | gap 1, opp_overlap 3705982, overlap 3705973 GGCAGAAGAGTAAAG CG-TCCGCGCCA CGGA TGGCGCGGATCG AGCCTACATGGATGT YPTS_3354 3706848 - 3706114 - | hypothetical protein YPTS_3355 3707886 - 3706960 - | glutaminase, core TERM 3917 3707965 - 3707948 - R 100 -9.8 -4.91852 | opp_overlap 3707947 3707945 3707948 GCCAGTAAAAACAAA GGCGCC GGTTAG GGCGCC CTGTTTAATGATCAG TERM 3918 3707948 - 3707965 + r 71 -9.8 -2.68493 | opp_overlap 3707948, overlap 3707947 3707945 GCCAGTAAAAACAAA GGCGCC GGTTAG GGCGCC CTGTTTAATGATCAG YPTS_3356 3708323 - 3707997 - | hypothetical protein YPTS_3357 3709042 - 3708323 - | tRNA (guanine-N(7)-)-methyltransferase YPTS_3358 3709311 - 3710570 + | A/G-specific adenine glycosylase YPTS_3359 3710748 - 3711020 + | Fe(II) trafficking protein YggX TERM 3919 3711024 - 3711048 + F 83 -9.3 -4.015 | gap 1, opp_overlap 3711021 3711017 3711026, overlap 3711026 CCGAGTAAGTAACCA CA-CGGGGCC AATTAA GGCCCCGCTG TTATTTCCTAAATAG TERM 3920 3711026 - 3711045 + F 83 -12.1 -2.75069 | opp_overlap 3711026 3711021 3711017, overlap 3711024 GAGTAAGTAACCACA CGGGGCC AATTAA GGCCCCG CTGTTATTTCCTAAA TERM 3921 3711045 - 3711026 - f 86 -12.1 -2.97613 | opp_overlap 3711024 3711026, overlap 3711021 3711017 GAGTAAGTAACCACA CGGGGCC AATTAA GGCCCCG CTGTTATTTCCTAAA TERM 3922 3711835 - 3711811 - g 100 -9.4 -5.18371 | gap 1, opp_overlap 3711811 TGCTACAAAACAAAA TGCAAACACGG ACTT CCG-GTTTGCA TGTGATCTCGTTCGT YPTS_3360 3711327 - 3712403 + | lytic transglycosylase catalytic YPTS_3361 3712597 - 3712767 + | hypothetical protein YPTS_3362 3712721 - 3713821 + | periplasmic binding protein TERM 3923 3714668 - 3714633 - g 79 -11.1 -3.57792 | opp_overlap 3714635 CCACGCACTGGCAAA CCCGTCGACACGCCG CGTGAT CGCCGTTTCGACGAG AGCTATAACGCCACC YPTS_3363 3713814 - 3715958 + | TonB-dependent siderophore receptor TERM 3924 3716053 - 3716080 + T 73 -8.5 -3.65351 | opp_overlap 3716055 3716057 AGGGTAATGTTACTA CAGAGGGCA TTGTTACTGC TGCCCTCTG TTTAGATCAACGTCC YPTS_3364 3717096 - 3716113 - | inner-membrane translocator TERM 3925 3717014 - 3717003 - G 83 -4.4 -5.35721 | ACATAACAATAAAAA CAAC GGTC GTTG AGTTGTCTAGCAGGA YPTS_3365 3718628 - 3717129 - | ABC transporter related TERM 3926 3718390 - 3718419 + g 71 -3 -4.95155 | gap 1 ATAATGCCAATACGG CTTT-CTTTACTG TGGAT CGGTGAAGTAAAG TTTTTCTCCTCTCCG YPTS_3366 3719633 - 3718674 - | putative sugar ABC transporter periplasmic binding protein YPTS_3367 3722376 - 3720214 - | Orn/Lys/Arg decarboxylase major region TERM 3927 3721673 - 3721659 - G 71 -7 -4.03234 | CCGTTTCCAGATAAA CCGGCG TCG CGCCCG CCTGGATCAACGCAC TERM 3928 3721952 - 3721942 - G 76 -2.4 -5.1925 | GTAGAATTCAAAAAA CTGG CGT CCTG CAGGATGCTTGCGAA TERM 3929 3722644 - 3722634 - R 78 -4 -5.09225 | ACCGCATGGAAAAAA TAAG GGG CTTA GTAGAAATAAAGCAG TERM 3930 3723087 - 3723071 - R 76 -10.9 -2.62616 | opp_overlap 3723070 3723069 3723066 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 3931 3723242 - 3723268 + r 85 -7.2 -4.90002 | opp_overlap 3723242 TACGGGACGAAGAAA CCGGAGGATGTC GAT GACAAACTTCGG TTTTCTTGTGTCTTA YPTS_3368 3723522 - 3723373 - | integrase YPTS_3369 3724298 - 3723705 - | hypothetical protein TERM 3932 3724317 - 3724337 + r 72 -9.7 -2.9006 | opp_overlap 3724322, overlap 3724320 TTCCTGCGCACTTTT CAACAGGCT GAT AGCCGGTTG TATCTCCAGTACCTT TERM 3933 3724696 - 3724722 + r 71 -3.2 -5.01042 | opp_overlap 3724696, overlap 3724692 TTCTTATACAACAAA TTATTATATAAA TAG TTTGTGTAATGA TTTTTCCTTTAAATT YPTS_3370 3725317 - 3724949 - | IS1 transposase YPTS_3371 3725646 - 3725371 - | insertion element protein YPTS_3372 3726509 - 3725742 - | hypothetical protein TERM 3934 3726367 - 3726378 + g 74 -4.4 -4.84033 | TGGTTTTTTTTTACA TGCA AAAT TGCA TTTTCATTTTTGTCT TERM 3935 3726484 - 3726465 - G 71 -3 -5.00616 | GTGGGGTGTAAAAAA TAAAATAT AAAA ATATTTCA ATGTCAATTTTTTAA YPTS_3373 3728793 - 3726496 - | peptidase M23 TERM 3936 3726622 - 3726635 + g 71 -3.9 -4.75288 | ATCGGCACTTTCTGC TTGAT CTTT ATCAA TTTCTTTTACTGTAC YPTS_3374 3729240 - 3728809 - | rhs element Vgr protein YPTS_3375 3729444 - 3729340 - | rhs element Vgr protein TERM 3937 3729810 - 3729800 - R 84 -2.6 -5.60993 | opp_overlap 3729800 CCTTCTACAAAAAAA TTAT TAT ATAA ATAGTTTGTGTAATG YPTS_3376 3730641 - 3730366 - | insertion element protein YPTS_3377 3731567 - 3731058 - | hypothetical protein TERM 3938 3731358 - 3731373 + g 70 -7.6 -3.93583 | CTCACTTTCCTCACT TTCCTC ACTT GAGGAA TTTCTGCATAGCTTA YPTS_3378 3733790 - 3731568 - | peptidase M23 TERM 3939 3733730 - 3733750 + g 100 -15.5 -3.18511 | opp_overlap 3733734 GCATCATCGCGTCAA CCCAGTCAG CAT CTGACTGGG TTGCATCTCTATCTC YPTS_3379 3736153 - 3733805 - | type VI secretion system Vgr family protein YPTS_3380 3738798 - 3736150 - | type VI secretion ATPase TERM 3940 3738065 - 3738088 + g 72 -6 -4.40561 | overlap 3738075 GCGGTTTTACCGACG CCCGGTTC ACCGACCA GAATCGGG TTGTTTTTACGGCGG TERM 3941 3739132 - 3739113 - R 100 -11.4 -5.69068 | opp_overlap 3739116 TAAAAACACAAAAAA GCAGGCGG CGAA CCGCCTAC TTGCGGGGTTACCCT YPTS_3381 3739707 - 3739216 - | Hcp1 family type VI secretion system effector YPTS_3382 3741447 - 3739711 - | OmpA/MotB domain-containing protein TERM 3942 3740360 - 3740330 - G 77 -10.4 -3.61398 | GCTTTCGGGGAATAA TCCGTCATCGCCAC GCT GTGGTACTGACGGA TATCAAAGGCCACCC YPTS_3383 3742133 - 3741447 - | hypothetical protein TERM 3943 3741843 - 3741826 - G 74 -2.6 -5.09225 | overlap 3741827 3741828 AGGGTATTGAAAAAA TGCGCC TGTAAG GGCGAA TGGCACCACACGAAG YPTS_3384 3743482 - 3742130 - | type VI secretion protein YPTS_3385 3745032 - 3743494 - | EvpB family type VI secretion protein TERM 3944 3744993 - 3745015 + g 74 -6.3 -4.34402 | gap 1, overlap 3744994 TATTCTTTAATACGG TCGT-CGCAG TACC CTGCGCACGG TTTTCCTGTACAGAC YPTS_3386 3745581 - 3745081 - | type VI secretion protein YPTS_3387 3746946 - 3746791 - | hypothetical protein YPTS_3388 3747360 - 3746989 - | hypothetical protein TERM 3945 3747217 - 3747206 - G 90 -3 -5.84011 | AATAAAAAATAAAAA GATA TAAA TATC ATCCCAACGCTTCTG TERM 3946 3747326 - 3747336 + g 71 -2.6 -4.96773 | ATAAAAATAATTAGT TTTA ACA TAAA TTTATTTTTGATTCC YPTS_3389 3747780 - 3747517 - | insertion element protein YPTS_3390 3748177 - 3747848 - | lipoprotein YPTS_3391 3749344 - 3748694 - | abortive infection protein YPTS_3392 3750010 - 3749888 - | hypothetical protein YPTS_3393 3750191 - 3750045 - | hypothetical protein TERM 3947 3750608 - 3750592 - g 70 -2.2 -4.95957 | opp_overlap 3750592 TAAATTAAGGAAAAA GACGTT TAAGG ATCGTC TTAACTGGGAGGTGA YPTS_3394 3750515 - 3751165 + | autoinducer synthesis protein YPTS_3395 3751889 - 3751146 - | LuxR family transcriptional regulator TERM 3948 3751935 - 3751915 - H 74 -9.8 -3.16881 | opp_overlap 3751915, overlap 3751924 3751929 CATTTACTGTACTAA GGTGCAAT AGGAA ATTGCACC TTAGTACAACTACCG TERM 3949 3751915 - 3751935 + H 74 -9.8 -3.15544 | opp_overlap 3751915 3751924 3751929 CATTTACTGTACTAA GGTGCAAT AGGAA ATTGCACC TTAGTACAACTACCG TERM 3950 3752121 - 3752065 - H 70 -3.9 -4.78157 | gap 1, opp_overlap 3752071, overlap 3752071 ACCAAAAATAATAAA GGAAAATGCTACAGAAGTGC-ACCTG TTTCTG CAAGTAGAACTTCTGTAGCATTTAAT ATAATGTCTAGCTCC TERM 3951 3752071 - 3752115 + H 86 -10.2 -3.88062 | gap 1, opp_overlap 3752065 3752071 AATAATAAAGGAAAA TGCTACAGAAGTGC-ACCTGT TTCT GCAAGTAGAACTTCTGTAGCA TTTAATATAATGTCT TERM 3952 3752115 - 3752071 - H 100 -11.7 -4.71708 | gap 1, opp_overlap 3752071, overlap 3752065 AATAATAAAGGAAAA TGCTACAGAAGTGC-ACCTG TTTCTG CAAGTAGAACTTCTGTAGCA TTTAATATAATGTCT TERM 3953 3752714 - 3752736 + G 71 -10.6 -2.83449 | opp_overlap 3752716 3752718, overlap 3752711 3752716 3752718 TACTAATCCGGCAGA TATAGCGCCC TCA GGACGCTATA TGATTATAGCGCTGT TERM 3954 3752734 - 3752716 - g 74 -11 -2.88579 | opp_overlap 3752714 3752711 3752716 3752718, overlap 3752718 CTAATCCGGCAGATA TAGCGCCC TCA GGACGCTA TATGATTATAGCGCT YPTS_3396 3752451 - 3753809 + | hypothetical protein TERM 3955 3753983 - 3754022 + F 100 -15.4 -5.93809 | opp_overlap 3753990 3754016 ATTGTCCCTTCCCTA TGATAAATTTCATGCTAA TAAT TAAGCATGAAATTTATCA TTTTTTTTATAAAAA TERM 3956 3754015 - 3753990 - f 74 -7.7 -3.96148 | opp_overlap 3753983 CTTCCCTATGATAAA TTTCATGCTAA TAAT TAAGCATGAAA TTTATCATTTTTTTT YPTS_3397 3754197 - 3755030 + | intradiol ring-cleavage dioxygenase YPTS_3398 3756544 - 3755321 - | major facilitator transporter TERM 3957 3755772 - 3755755 - G 74 -6.3 -4.42238 | gap 1, overlap 3755756 3755757 CTATGCTAAGCAAAA TG-GCCAC GTG GTGGCTCA CCGTGGTGGCCGAAT TERM 3958 3757621 - 3757599 - g 74 -11.3 -2.78032 | opp_overlap 3757598 3757597, overlap 3757598 3757596 CTGTCGGTAAAAGAG GCCAAACGC GGTAT GCGCTTGGC ACGTTTGGCTCAAAC YPTS_3399 3756684 - 3758456 + | IucA/IucC family protein YPTS_3400 3758440 - 3759390 + | putative siderophore biosynthesis protein IucB YPTS_3401 3759387 - 3761135 + | IucA/IucC family protein YPTS_3402 3761132 - 3762460 + | aerobactin siderophore biosynthesis protein IucD YPTS_3403 3762532 - 3764712 + | TonB-dependent siderophore receptor TERM 3959 3764780 - 3764825 + T 82 -7.9 -4.55697 | opp_overlap 3764780 3764784, overlap 3764784 ATCACCCATCAATAA TTA-AGGGGCTTTGCGCAA AATTAAGACA TTGCGCAA-GCCCCTATAA TTTGTTTATGGCAAT TERM 3960 3764825 - 3764780 - T 80 -10 -3.73914 | opp_overlap 3764780 3764784, overlap 3764784 ATCACCCATCAATAA TTA-AGGGGCTTTGCGCAAAAT TAAG ACATTGCGCAA-GCCCCTATAA TTTGTTTATGGCAAT TERM 3961 3764820 - 3764784 - T 100 -12.4 -3.56142 | gap 1, opp_overlap 3764780 3764784, overlap 3764780 CCCATCAATAATTAA GGGGCTTTGCGCAAAAT TAAG ACATTGCGCAA-GCCCC TATAATTTGTTTATG TERM 3962 3764784 - 3764820 + T 77 -10.3 -3.16414 | gap 1, opp_overlap 3764784 3764780, overlap 3764780 CCCATCAATAATTAA GGGGCTTTGCGCAA AATTAAGACA TTGCGCAA-GCCCC TATAATTTGTTTATG YPTS_3404 3766427 - 3765003 - | sugar (glycoside-Pentoside-hexuronide) transporter YPTS_3405 3767662 - 3766589 - | hypothetical protein TERM 3963 3767994 - 3767969 - g 91 -3.3 -5.85737 | gap 1, overlap 3767974 3767978 ATATGAATAAAAAAA CG-AAAGTGACT ATG AGCCACATTGCG GCCAAAGCGGGAGTA TERM 3964 3767988 - 3767974 - g 77 -6.4 -4.57518 | overlap 3767969 3767978 AATAAAAAAACGAAA GTGACT ATG AGCCAC ATTGCGGCCAAAGCG TERM 3965 3768133 - 3768121 - g 76 -9.1 -3.87815 | GGCTATGTCCATAAA GCCGT GGA ACGGC CCATTGCCAGAGATA YPTS_3406 3767956 - 3768975 + | LacI family transcription regulator TERM 3966 3769394 - 3769406 + G 80 -9.1 -4.18934 | overlap 3769388 CGCCAATCGCGGCCT GGCCA TCT TGGCC TTTATTGGCATCCTC YPTS_3407 3769257 - 3770636 + | anion transporter TERM 3967 3770673 - 3770694 + F 86 -10.2 -3.86346 | opp_overlap 3770673 TACGCCGTCAGGGAA TTAGGCCC CTGCAT GGGCCTAA TTTATGGGGCAATGA TERM 3968 3770694 - 3770673 - f 76 -10.2 -3.05596 | opp_overlap 3770673 TACGCCGTCAGGGAA TTAGGCCC CTGCAT GGGCCTAA TTTATGGGGCAATGA YPTS_3408 3770685 - 3770789 + | hypothetical protein YPTS_3409 3771229 - 3770816 - | hypothetical protein TERM 3969 3771166 - 3771179 + g 77 -6.7 -4.59773 | TGCCGGAGACAACTT TCTGG CTAT CCAGA TTTTTCAAAGTAAGA YPTS_3410 3772159 - 3771773 - | hypothetical protein TERM 3970 3772199 - 3772210 + r 70 -5.8 -4.29907 | overlap 3772184 3772181 TGGAGGACGTCTTCC GCCA TTAT TGGC TTTATATTCTAATAT YPTS_3411 3772958 - 3772434 - | hypothetical protein YPTS_3412 3773506 - 3773183 - | hypothetical protein TERM 3971 3773592 - 3773558 - R 70 -9.4 -2.7898 | opp_overlap 3773559, overlap 3773555 GCTAATACTTAACCA CTTTGAGTAGCTCTAA TAT TTAGAGCTACTCACTA AAAAAATAAGAAATT YPTS_3413 3774166 - 3773651 - | hypothetical protein TERM 3972 3773700 - 3773688 - G 71 -2.7 -4.87786 | TCAATCTCAGAAAAA GAAAT TTT ATCTC GGGCAAAGGGCGGTT TERM 3973 3773780 - 3773766 - G 77 -5 -4.91109 | overlap 3773767 CTTTTATCATAAAAA CTATCC CAT GGATAA ATACCAAAATACATT TERM 3974 3777458 - 3777488 + r 100 -14.3 -4.4773 | opp_overlap 3777458 3777462, overlap 3777462 CCCGTTAGCTAGAAA TAAATTCCCAATG CTAAC CATTGGGAATTTA TTTTACTTAATGTCA TERM 3975 3777488 - 3777458 - R 100 -14.3 -3.91897 | opp_overlap 3777458 3777462, overlap 3777462 CCCGTTAGCTAGAAA TAAATTCCCAATG CTAAC CATTGGGAATTTA TTTTACTTAATGTCA TERM 3976 3777462 - 3777484 + r 100 -10.7 -4.78981 | opp_overlap 3777458 3777462, overlap 3777458 TTAGCTAGAAATAAA TTCCCAATG CTAAC CATTGGGAA TTTATTTTACTTAAT TERM 3977 3777484 - 3777462 - R 100 -10.7 -4.57482 | opp_overlap 3777462 3777458, overlap 3777458 TTAGCTAGAAATAAA TTCCCAATG CTAAC CATTGGGAA TTTATTTTACTTAAT YPTS_3416 3778150 - 3777491 - | hypothetical protein YPTS_3417 3778889 - 3778539 - | hypothetical protein TERM 3978 3779286 - 3779302 + r 71 -9.5 -2.90645 | opp_overlap 3779285 3779283 3779286 CAGAATTAATAACAC TCCTCAA TTA TTGAGGA TAATATTATATTTTT YPTS_3418 3779760 - 3779308 - | hypothetical protein YPTS_3419 3784249 - 3779765 - | YD repeat-containing protein YPTS_3420 3785582 - 3784263 - | hypothetical protein YPTS_3421 3787833 - 3785608 - | type VI secretion system Vgr family protein TERM 3979 3788367 - 3788399 + r 76 -9.2 -3.57144 | TTAGGTTATTTATTA GGGTATCAGTACCC TCACT GCATACTGATACCC TTTACACATAAAAAC YPTS_3422 3792203 - 3788418 - | outer membrane autotransporter TERM 3980 3789642 - 3789662 + g 72 -11.1 -2.50816 | overlap 3789641 GTTCACCCGGACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG TERM 3981 3792449 - 3792461 + r 70 -2.7 -5.01823 | ATAAGACCCGACTAA TTCTT TGT AGGAA TTTTCTTGTTATTGT TERM 3982 3792620 - 3792630 + r 73 -2.6 -5.15969 | opp_overlap 3792620 GTTGGCGACACTAAA TAAA TGA TTTA TTTTTTAACTTACCG TERM 3983 3792839 - 3792809 - R 83 -9.1 -4.15044 | opp_overlap 3792809 3792808 TCTCCCCTGAATAAA GGTATCAGTACCC TCACT GCATACTGATACC CTTTACGCATAAAAA YPTS_3423 3796638 - 3792859 - | outer membrane autotransporter TERM 3984 3794083 - 3794103 + g 72 -11.1 -2.50816 | overlap 3794082 GTTCACCCGGACCGA GGTGGTGCC GGT GGCATCGCC GTTGATCACTAACCG TERM 3985 3797117 - 3797127 + r 75 -3.2 -5.14626 | TTCCTTACCCTACGT CGTT TCG AGCG TTTTATTTTCGTGAT YPTS_3424 3799153 - 3797672 - | gluconate transporter TERM 3986 3798698 - 3798671 - G 76 -7 -4.42788 | gap 1 GGCAACCTCATAAAA CATC-GCCAGACC AAA GATCAGGCCGATG ATAATTACCGCGGCT TERM 3987 3799335 - 3799313 - R 83 -11.4 -2.94912 | opp_overlap 3799317, overlap 3799317 GCGGCAAGCGAGAGA CAAATGGGTC TGG AACCCATTTG AACCGCATTTATGTT YPTS_3425 3800317 - 3800186 - | hypothetical protein YPTS_3426 3800554 - 3800952 + | hypothetical protein TERM 3988 3801194 - 3801174 - f 84 -9.9 -3.75933 | overlap 3801191 ATATATGTTATTAAA TATGCTTAA CTA TTAAGCATA AAATAATATAAATAG YPTS_3427 3801388 - 3802263 + | hypothetical protein YPTS_3428 3804383 - 3802626 - | ABC transporter related TERM 3989 3803580 - 3803568 - G 71 -9.1 -3.52079 | CAATACTTCAGACAA GGGGA TCC TCCCC CCTACCCAGCCCCAG TERM 3990 3803657 - 3803669 + g 77 -4.7 -4.87786 | overlap 3803666 TAAAACTGTAGATCG GCCAG ACA CCGGC TTTTTCTGCCGTTAA TERM 3991 3803911 - 3803894 - G 79 -11.3 -3.60971 | opp_overlap 3803888 AGGGTAACGTTGAAA GCATGGC TAAC GCCATGC GCCAATCTTTTAGCA YPTS_3429 3806148 - 3804376 - | ABC transporter related TERM 3992 3805364 - 3805341 - G 100 -9.6 -5.00616 | CCCCTTGGGAAAAAA GCATGATGCC AACA GGCATAATGC ACAATAAACCGAGAT TERM 3993 3805727 - 3805678 - G 80 -2.9 -5.38326 | gap 2, overlap 3805686 CCAATCAAAGAAAAA CAGTAAAATGGCGGCAGCAATAG GCGTGA CAATTGCCGCCGCCATA-T-CGG GTAAATGGTGAGCCA TERM 3994 3805721 - 3805686 - G 100 -15.5 -4.62102 | overlap 3805678 AGAAAAACAGTAAAA TGGCGGCAGCAATAG GCGTGA CAATTGCCGCCGCCA TATCGGGTAAATGGT YPTS_3430 3807416 - 3806148 - | major facilitator transporter TERM 3995 3806911 - 3806895 - G 91 -6.5 -5.29445 | CTGTAACAACAAAAA CCACCAC ACG GTGACGG ACCACCCCCAAACAC TERM 3996 3807124 - 3807102 - G 76 -8.5 -4.00445 | gap 1 GACCAGTAATAACAA CGCCA-AGAC ATGT GTCTCTGGCG CAAAAAACCATAGCA TERM 3997 3807148 - 3807132 - G 71 -2.9 -5.00616 | CTCTGGCGCAAAAAA CCATAGC AGC GTCATGG CAATCAAAGAGCACA YPTS_3431 3808179 - 3807406 - | thioesterase TERM 3998 3807533 - 3807521 - G 75 -3.3 -5.1244 | TGATTAAGATAAAAA TGCCC ACC GGGGA ACACCTGTAGCCGAA TERM 3999 3807749 - 3807764 + g 71 -4.6 -4.64676 | overlap 3807750 TAGTCCAATGTGCTG CCACCC AATT GGGTGA TTTTGTTCAAGATAC YPTS_3432 3809299 - 3808172 - | thiazolinyl imide reductase TERM 4000 3808230 - 3808208 - G 100 -9.8 -4.99035 | CCATTGAGATAAAAA TGTCGCCACC TTA GGTGACGCCA TCATCGGTTCGGCAA YPTS_3433 3810366 - 3809296 - | saccharopine dehydrogenase YPTS_3434 3816083 - 3810363 - | amino acid adenylation domain-containing protein TERM 4001 3813561 - 3813545 - G 82 -12.3 -3.19192 | CTGGAGGTAAGTTAA CGGGGAT CCA ATCCCCG GAAAGCAAGATATAA TERM 4002 3814458 - 3814434 - G 83 -9.9 -4.21933 | TGAATGCCAAAACAA GGGCGAGTCAC AAA GTGCCTCTCCC GTGTCGACCTCCTCC TERM 4003 3814821 - 3814835 + g 83 -11.4 -3.61398 | AACGATGGGCATTCT GGCGTG CCC CACGCC TTGTTGCCGCCCCCA YPTS_3435 3827708 - 3816096 - | amino acid adenylation domain-containing protein TERM 4004 3817786 - 3817767 - G 78 -10.8 -3.34398 | opp_overlap 3817765 3817757 3817779, overlap 3817765 TTGCTCGTGTAAATA CTGTGCAA GCCG TTGCACAG CGTGTTCAAGTTGTT TERM 4005 3820079 - 3820058 - G 77 -10.2 -3.59979 | overlap 3820076 TCCCTCCATGGCAAA GGGATTGC AGCATA GCAATCCC CTCAGGCAGGGCATC TERM 4006 3822478 - 3822492 + g 71 -7 -4.08945 | opp_overlap 3822474 3822475, overlap 3822479 GAAACCAAATAGTGC AGCGCC CCC GGCGCA TTTTCCCCGAGTAAT TERM 4007 3822479 - 3822491 + g 72 -10.5 -3.05046 | opp_overlap 3822474 3822475, overlap 3822478 AAACCAAATAGTGCA GCGCC CCC GGCGC ATTTTCCCCGAGTAA TERM 4008 3823272 - 3823258 - G 76 -9.2 -3.90586 | opp_overlap 3823265 3823268 ATACGATGGGATAAA CGCGCC CGT AGCGCG TAGCGCTCCTTTGCA TERM 4009 3824038 - 3824049 + g 71 -7.2 -4.07568 | GCCAACCATTGTTTG GGCG ATTG CGCC TTTTCAAAGCGACAG TERM 4010 3824691 - 3824710 + g 70 -2 -4.86621 | AACCTGACTTTTACT CGCCCCTA AACG TAATGGCG TTTTTCGTTGACCAT TERM 4011 3827809 - 3827845 + r 82 -5.9 -4.97461 | opp_overlap 3827811 3827813, overlap 3827811 3827813 TTTTACACCAAAATT AATATATGGCTGTATCT AAT AGTCACAGCCATATGTG TTTTTAATGTTTATT TERM 4012 3827843 - 3827811 - R 73 -8.5 -3.73858 | opp_overlap 3827809 3827811 3827813, overlap 3827813 TTACACCAAAATTAA TATATGGCTGTATCT AAT AGTCACAGCCATATG TGTTTTTAATGTTTA TERM 4013 3827811 - 3827843 + r 79 -8.5 -4.07993 | opp_overlap 3827811 3827813, overlap 3827809 3827813 TTACACCAAAATTAA TATATGGCTGTATCT AAT AGTCACAGCCATATG TGTTTTTAATGTTTA TERM 4014 3827813 - 3827841 + r 75 -8.9 -3.60412 | opp_overlap 3827813 3827811, overlap 3827811 3827809 ACACCAAAATTAATA TATGGCTGTATCT AAT AGTCACAGCCATA TGTGTTTTTAATGTT TERM 4015 3827841 - 3827813 - R 83 -11.1 -3.44148 | opp_overlap 3827811 3827809 3827813, overlap 3827811 ACACCAAAATTAATA TATGGCTGTATCT AAT AGTCACAGCCATA TGTGTTTTTAATGTT YPTS_3436 3829931 - 3827859 - | TonB-dependent receptor TERM 4016 3828883 - 3828868 - G 71 -2.6 -4.84359 | overlap 3828842 TCATCTTGATAAAAA TAATAG CTCC CTATCA ACCAATTAAATGGCC TERM 4017 3829667 - 3829657 - G 81 -3.2 -5.44119 | CGCATGGTAAAAAAA CCTG CGT CAGA TGGATTGCCCGCTTT TERM 4018 3829766 - 3829783 + g 77 -2.7 -5.2112 | CAAAGCCCGTTAATA CACTTAT ACTT ATGGGTG TTTTTTGCTGCTGTT YPTS_3437 3831547 - 3830315 - | peptidase T YPTS_3438 3833542 - 3831986 - | AbgT putative transporter TERM 4019 3833339 - 3833318 - G 73 -7.3 -4.17556 | gap 1, opp_overlap 3833334 3833338, overlap 3833319 CATAGTGGTAATAAA GGTCACCAGT TCA ACCGGTG-CC AACATATTGGTAACT TERM 4020 3833434 - 3833414 - G 76 -8.9 -3.83756 | AAACGATAATCCAAA GGAGAGTGC CCA GCACACCCC CAGCGCATAAATAAA YPTS_3439 3833651 - 3833785 + | hypothetical protein TERM 4021 3835930 - 3835908 - g 76 -8.4 -4.06678 | overlap 3835909 ATTTACCCAGATAAA CTGGCGGC TGAATTG GCCGCCAA GGAGATGACGGGCGA YPTS_3440 3834291 - 3836093 + | leucine-rich repeat-containing protein TERM 4022 3836123 - 3836153 + T 84 -11.3 -3.14344 | opp_overlap 3836123 TTATGCCATAAAAAA CGGCGCATATT CTGTCCTGC AATATGCGCCG TTGATCACCACCATG TERM 4023 3836153 - 3836123 - T 100 -11.3 -5.26316 | opp_overlap 3836123 TTATGCCATAAAAAA CGGCGCATATT CTGTCCTGC AATATGCGCCG TTGATCACCACCATG YPTS_3441 3847331 - 3836199 - | outer membrane autotransporter TERM 4024 3836338 - 3836348 + g 73 -8.2 -3.92542 | AGCTCCGCAATATTC GCCG TCC CGGC TTGTTTCACCGTGAC TERM 4025 3847087 - 3847065 - G 73 -9.9 -3.34222 | gap 1 AGTACCATTGGATAA CGC-GGCAGA AAGC TCTGCCTGCG TGCTGACAGTAATAT TERM 4026 3847791 - 3847781 - R 82 -3.2 -5.5208 | GTATAATATAAAAAA GGAA AAA TCCC ACAAAAATACAAGAA TERM 4027 3847924 - 3847914 - R 79 -3.2 -5.35224 | CTTATAAAAAGAAAA GTAG ACA CCAC AATAATTTATTAAAT TERM 4028 3847963 - 3847979 + r 82 -5.9 -5.02645 | AACAACAAGATGATT CAGTAAT GTA GTTACTG TTTATTTTATTTGTT YPTS_3442 3848756 - 3848169 - | hypothetical protein TERM 4029 3848488 - 3848469 - G 73 -2.2 -5.04733 | gap 1, overlap 3848450 3848471 3848473 GAATGACAAATAAAA TCTAT-CGC CCA GCGGATAAA CAAATTTCTGTTGCC TERM 4030 3848822 - 3848804 - H 100 -12.4 -4.13995 | TGCCTACAAACTAAA CCCTCCCC CTG GGGGAAGG TCAAAGGCAGAATTG YPTS_3443 3849032 - 3850522 + | ShET2 enterotoxin domain-containing protein TERM 4031 3850588 - 3850547 - T 86 -11.5 -3.34715 | opp_overlap 3850550 3850551, overlap 3850545 3850548 CACTGCCCCCAAAGA GTCACCCATACCCACCGGT CTTA ACCGGCGGGTATGGGCTTT ATGACAAAACAGCAT TERM 4032 3850587 - 3850548 - T 100 -15 -2.60615 | opp_overlap 3850550 3850551, overlap 3850547 3850545 ACTGCCCCCAAAGAG TCACCCATACCCACCGGT CTTA ACCGGCGGGTATGGGCTT TATGACAAAACAGCA TERM 4033 3850550 - 3850585 + T 100 -17.6 -3.85698 | opp_overlap 3850548 3850547 3850545, overlap 3850551 TGCCCCCAAAGAGTC ACCCATACCCACCGGT CTTA ACCGGCGGGTATGGGC TTTATGACAAAACAG TERM 4034 3850551 - 3850584 + T 100 -21.1 -2.91276 | opp_overlap 3850548 3850547 3850545, overlap 3850550 GCCCCCAAAGAGTCA CCCATACCCACCGGT CTTA ACCGGCGGGTATGGG CTTTATGACAAAACA YPTS_3444 3853760 - 3850641 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 4035 3852434 - 3852401 - G 71 -8.9 -3.52906 | gap 1, overlap 3852399 CGATTGGCACAAATA CCG-CCATCAGCACCA GTG TGGTGGCGATGATCGG CCCGGCAATCTGGCT YPTS_3445 3855065 - 3853773 - | RND family efflux transporter MFP subunit TERM 4036 3856450 - 3856427 - g 71 -8.8 -3.67597 | opp_overlap 3856439 GCTGCCAGCGAAGAA CGTTTCCGCC ATGT GGCAGAATCG GCCAGTGATTGGTTA YPTS_3446 3855503 - 3858070 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4037 3858224 - 3858270 + F 100 -15.4 -3.05384 | gap 1, opp_overlap 3858229, overlap 3858229 3858234 GGTCACAAGCGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4038 3858264 - 3858229 - f 93 -12.7 -3.06133 | opp_overlap 3858224 3858229 3858234 CAAGCGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4039 3858229 - 3858265 + F 77 -10.3 -3.19192 | gap 1, opp_overlap 3858229, overlap 3858224 3858234 CAAGCGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4040 3858234 - 3858244 + F 75 -5.4 -4.88736 | opp_overlap 3858229, overlap 3858229 3858224 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPTS_3447 3858275 - 3858790 + | IS1661 DNA-binding protein TERM 4041 3859610 - 3859592 - g 72 -11 -2.73735 | overlap 3859582 3859580 3859603 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPTS_3448 3858844 - 3859629 + | integrase catalytic region TERM 4042 3859722 - 3859753 + F 76 -9.4 -3.54543 | gap 1, overlap 3859719 GTCCACTGCGTGGAT GCCCTCCGTCA-TCG TTT CGGCTGGCGGACGGC TTTACGCGGGTCCCT TERM 4043 3859786 - 3859800 + F 95 -9.2 -4.46267 | opp_overlap 3859786 GCGTGACGCCTAAAA CGGGCG TCC TGCCCG TTTTCCTTGCCTTCT TERM 4044 3859800 - 3859786 - f 79 -8.5 -4.11216 | opp_overlap 3859786 GCGTGACGCCTAAAA CGGGC GTCCT GCCCG TTTTCCTTGCCTTCT TERM 4045 3860162 - 3860150 - f 84 -2.7 -5.73672 | AAACAATGAAAAAAA CAATA GTA CATTG TTATTATATTTTTTG TERM 4046 3860352 - 3860379 + F 72 -9.4 -3.19889 | opp_overlap 3860352 TTATTTGAAAAAAAA CAGATTTAAAAA TCAA TTTTTGAATCTG TTAAGTATATTACTA TERM 4047 3860379 - 3860352 - f 100 -7.2 -5.78622 | opp_overlap 3860352 TTATTTGAAAAAAAA CAGATTTAAAAA TCAA TTTTTGAATCTG TTAAGTATATTACTA TERM 4048 3860692 - 3860702 + G 73 -5.4 -4.49316 | opp_overlap 3860692, overlap 3860696 AAAGGGGCTACACCA TGGT TAA ACCA TTTATTCTTGCTGCT YPTS_3449 3860691 - 3861158 + | 17 kDa surface antigen YPTS_3450 3861682 - 3861311 - | hypothetical protein TERM 4049 3861411 - 3861395 - G 74 -6.5 -4.31837 | AAGAAAGGGAACAAA CAGCCAT ACG AAGGCTG AGTATCCGGCATCAT TERM 4050 3861590 - 3861563 - G 71 -7.1 -4.08706 | opp_overlap 3861562, overlap 3861565 3861581 GTCGTAGCAGAGAAA TAGCATTGTCT GAAATA AGACAATGCTC ACATATTGTAATCTA TERM 4051 3861588 - 3861565 - G 76 -9.7 -3.6393 | opp_overlap 3861562, overlap 3861563 3861581 CGTAGCAGAGAAATA GCATTGTCT GAAATA AGACAATGC TCACATATTGTAATC YPTS_3451 3862118 - 3861666 - | hypothetical protein TERM 4052 3861727 - 3861713 - G 83 -4.4 -5.49579 | opp_overlap 3861713 TCAGAAAAAATAAAA TAATAA AAC TTATTA CTGTTGATATAATGT YPTS_3452 3862714 - 3862118 - | hypothetical protein TERM 4053 3862959 - 3862945 - R 80 -6.4 -4.80455 | opp_overlap 3862945 CAGCGAAAGAGAAAA TCGGTC AGA AACCGA TTTAAAATTGACACG YPTS_3453 3864085 - 3863174 - | OmpA/MotB domain-containing protein TERM 4054 3863558 - 3863547 - G 75 -5.8 -4.5123 | overlap 3863557 AACCGACTAAAGAAA GGTG TTAA CACC GCACTACTGCGCTGG YPTS_3454 3864951 - 3864085 - | MotA/TolQ/ExbB proton channel TERM 4055 3864729 - 3864709 - G 71 -9.1 -3.55814 | opp_overlap 3864724, overlap 3864712 3864722 CAGCAATTCATACAA CAACAACAA TAA TTGCTGTTG AAACTCAACCGTATA YPTS_3455 3865662 - 3864967 - | RNA polymerase, sigma 28 subunit, FliA/WhiG YPTS_3456 3866138 - 3865668 - | putative flagellar biogenesis protein TERM 4056 3866102 - 3866120 + g 100 -10.4 -5.54885 | opp_overlap 3866100, overlap 3866113 GCAATAGGAATACCC GCATTTTC ATC GAAAATGC TTTTTTCTTGGTCTT YPTS_3457 3867261 - 3866164 - | flagellar hook-length control protein YPTS_3458 3867589 - 3867263 - | hypothetical protein TERM 4057 3867508 - 3867478 - G 76 -8.3 -4.03234 | overlap 3867481 GTTTGGCGATAGAAA CCAGCAGATGAGC CACGC GCTCATCCACCAG CAACAAGCGTGGCCA YPTS_3459 3867974 - 3867591 - | flagellar protein FliS TERM 4058 3867774 - 3867809 + g 87 -10.8 -4.23674 | opp_overlap 3867782 TACGCTGGTTAAGCC GTTAAGAATATTAATA CATT TATTAATACTCTTAAC TTTATGTTCATAACG YPTS_3460 3869270 - 3867984 - | flagellar hook-associated 2 domain-containing protein TERM 4059 3869446 - 3869422 - R 73 -5.8 -4.41844 | gap 1, opp_overlap 3869425, overlap 3869425 AAAACGTTGATAAAA GAATACCGCTC CGAA AAGCGGTA-TC GATTAAGTTCATGGC TERM 4060 3869444 - 3869425 - R 82 -8.6 -4.31397 | opp_overlap 3869425, overlap 3869422 ACGTTGATAAAAGAA TACCGCTC CGAA AAGCGGTA TCGATTAAGTTCATG YPTS_3461 3870692 - 3869490 - | flagellin domain-containing protein TERM 4061 3869721 - 3869748 + g 71 -2.7 -4.9792 | gap 1, opp_overlap 3869720 3869719 CGTGGCACGGAAAGC GCCGT-AGGCGT CAATC ACGTCTGACAGC TTTTTATCTGCCATC TERM 4062 3870889 - 3870870 - R 100 -8.6 -5.86976 | opp_overlap 3870870 GTATAAAATAAAAAA TACCGCTC CAAG AAGCGGTA TCGATTGATTAATGG YPTS_3462 3872162 - 3870975 - | flagellin domain-containing protein TERM 4063 3872670 - 3872681 + H 73 -3.6 -5.00616 | opp_overlap 3872663 GCGGACAACAAATCG CGGG TTTG CCTG TTTTTTGAACCCACC YPTS_3463 3872785 - 3873831 + | transcriptional regulator, CadC YPTS_3464 3873812 - 3874258 + | hypothetical protein TERM 4064 3874324 - 3874291 - T 82 -6 -5.00616 | gap 1, overlap 3874292 3874293 CTGGGGCTGAAAAAA CGGCTGACATGTGCG ATCAA CGCACATG-CAGCTT GAAGAATAACGGGTA TERM 4065 3874323 - 3874292 - T 78 -9.5 -3.60048 | gap 1, overlap 3874291 3874293 TGGGGCTGAAAAAAC GGCTGACATGTGCG ATCAA CGCACATG-CAGCT TGAAGAATAACGGGT TERM 4066 3874322 - 3874293 - T 91 -13 -2.75708 | gap 1, overlap 3874292 3874291 GGGGCTGAAAAAACG GCTGACATGTGCG ATCAA CGCACATG-CAGC TTGAAGAATAACGGG YPTS_3465 3875418 - 3874405 - | hypothetical protein YPTS_3466 3876353 - 3875430 - | flagellar hook-associated protein 3 TERM 4067 3875579 - 3875592 + g 79 -2.4 -5.44721 | TGGCATTCGACAGCT CCAT CTCTTC ATGG TTTTTTTGCAGTAAT YPTS_3467 3877743 - 3876382 - | flagellar hook-associated protein FlgK YPTS_3468 3878149 - 3877856 - | peptidoglycan hydrolase TERM 4068 3878105 - 3878128 + g 73 -7.4 -4.26871 | gap 1, opp_overlap 3878106 3878107, overlap 3878106 3878107 GAGGTCACCGACAAA AC-TCCCCGGT ATC ACCGGGGATGA TTTATTAATGGCTTC TERM 4069 3878106 - 3878127 + g 76 -10.9 -3.154 | gap 1, opp_overlap 3878106 3878107, overlap 3878105 3878107 AGGTCACCGACAAAA C-TCCCCGGT ATC ACCGGGGATG ATTTATTAATGGCTT TERM 4070 3878126 - 3878106 - G 91 -11.1 -4.42653 | opp_overlap 3878106 3878105 3878107, overlap 3878107 AGGTCACCGACAAAA CTCCCCGGT ATC ACCGGGGAT GATTTATTAATGGCT TERM 4071 3878107 - 3878125 + g 91 -14.6 -3.12942 | opp_overlap 3878106 3878107, overlap 3878106 3878105 GGTCACCGACAAAAC TCCCCGGT ATC ACCGGGGA TGATTTATTAATGGC TERM 4072 3878125 - 3878107 - G 91 -14.6 -3.2511 | opp_overlap 3878107 3878106 3878105, overlap 3878106 GGTCACCGACAAAAC TCCCCGGT ATC ACCGGGGA TGATTTATTAATGGC YPTS_3469 3879334 - 3878159 - | flagellar P-ring protein TERM 4073 3878580 - 3878552 - G 71 -6.6 -4.14541 | gap 1, opp_overlap 3878557 CAGCAATGACATAAA CGCCACGCG-CGC ACCG GCGTCTTGTGGCG CATTGACCATAACGT YPTS_3470 3879986 - 3879348 - | flagellar L-ring protein TERM 4074 3879532 - 3879548 + g 80 -7.3 -4.56775 | ATATATTCATCGCCC TGGTTGA GGG TCAGCCA TTTTTCGCCACGGAT YPTS_3471 3880833 - 3880048 - | flagellar basal-body rod protein FlgG YPTS_3472 3881632 - 3880901 - | flagellar basal-body rod protein FlgF TERM 4075 3881085 - 3881111 + g 78 -5.9 -4.73105 | gap 1 TCACGGGCCGCCGGG CCACGG-TTACT GACC AGTAAACCGCGG TTATTTTTTCTGAGT TERM 4076 3881371 - 3881381 + g 73 -5.4 -4.57073 | CGCTGAGCACCGCGA TCAG CCC CTGA TTTTTAAGGGCAATA YPTS_3473 3882876 - 3881632 - | flagellar basal body FlaE domain-containing protein TERM 4077 3882519 - 3882503 - G 75 -11.5 -2.62184 | opp_overlap 3882516 CCCGCCTGGATATTA CCGGCAG CAT CCGCCGG GTAGCCCTGTAATTT YPTS_3474 3883587 - 3882931 - | flagellar hook capping protein YPTS_3475 3884015 - 3883590 - | flagellar basal-body rod protein FlgC YPTS_3476 3884464 - 3884018 - | flagellar basal-body rod protein FlgB TERM 4078 3885309 - 3885292 - g 75 -3.3 -5.17576 | overlap 3885293 TATCAAGGTAAAAAA CCTCAGC AGTG GCCGAGT GGTGACCGCCACAGT YPTS_3477 3884552 - 3885370 + | flagella basal body P-ring formation protein FlgA YPTS_3478 3885675 - 3885941 + | putative flagellar regulatory protein YPTS_3479 3885948 - 3886373 + | hypothetical protein TERM 4079 3886682 - 3886653 - T 100 -10.1 -5.4505 | opp_overlap 3886653 CCGCCCAATAAAAAA TCCGTCATAGATA ATAT TCCCTATGACGGA TTTTTTATGGCCGAT TERM 4080 3886653 - 3886682 + T 95 -8 -5.24531 | opp_overlap 3886653 CCGCCCAATAAAAAA TCCGTCATAG ATAATATTCC CTATGACGGA TTTTTTATGGCCGAT YPTS_3480 3887149 - 3886712 - | flagellar export protein FliJ YPTS_3481 3888493 - 3887153 - | FliI/YscN family ATPase TERM 4081 3888439 - 3888419 - G 79 -11.8 -3.15544 | opp_overlap 3888415 CGTCACTCGCACTAA CCGGCCCG CCACT CGGGCCAG ATGAATGTTTTCGAT YPTS_3482 3889202 - 3888486 - | flagellar assembly protein FliH TERM 4082 3888524 - 3888514 - G 73 -3.2 -5.00616 | GGTTCCGTCAAAAAA CTGC TGT GCAA CGCACCAATGCATTG TERM 4083 3889170 - 3889188 + g 80 -3.8 -5.252 | overlap 3889173 AACCCGCAGTTTCAC TGCCCC CGCCCGT GGGGTA TTTTTTATCGACATC YPTS_3483 3890250 - 3889207 - | flagellar motor switch protein FliG YPTS_3484 3891862 - 3890222 - | flagellar M-ring protein FliF YPTS_3485 3892252 - 3891872 - | flagellar hook-basal body complex protein FliE YPTS_3486 3893297 - 3892269 - | sigma-54 dependent trancsriptional regulator TERM 4084 3892714 - 3892698 - G 73 -7.3 -4.258 | GTACTTATTAATAAA TGCCTTC ACC AAAGGCA GAATATCCTCTGGCC TERM 4085 3894086 - 3894121 + G 70 -7.6 -3.82262 | AAAATGCTAACCAGC CAGATGGGTAATATCG CATT CGATATCGACCGTCTG TTGTTACTTAACATT TERM 4086 3894263 - 3894250 - g 74 -3.1 -5.1361 | AGAAAGGCTAAAAAA CAAAC TCGG GCTTG AAATAACCGATCTCT TERM 4087 3894498 - 3894478 - g 91 -3.9 -5.67967 | AGCAGTAGAAAAAAA TGTCTCACT GTC AGAGAGGCA ACTTGAATACTTAGT YPTS_3487 3893840 - 3894739 + | putative flagellar motor switch protein TERM 4088 3895101 - 3895089 - g 73 -3.4 -4.90266 | opp_overlap 3895089 GTGATTAATGAAAAA TACG GCCTG CGTA TTATTAACATCAATA YPTS_3488 3894732 - 3895145 + | flagellar motor switch protein FliN TERM 4089 3895188 - 3895211 + G 73 -10.2 -3.10499 | overlap 3895209 TAGCTATCATCAGCC GCGGCCTGCT GGTG GGCGGGCTGC TGTATTCCCCTCTTC YPTS_3489 3895142 - 3895912 + | flagellar biosynthetic protein FliP YPTS_3490 3895914 - 3896186 + | flagellar biosynthetic protein FliQ YPTS_3491 3896187 - 3896966 + | flagellar biosynthetic protein FliR TERM 4090 3897009 - 3896999 - g 73 -4.6 -4.76312 | overlap 3897000 3897003 GAGAAGAGTGAAAAA CCCA CAG CGGG GAAGCTGTCGAAAGC TERM 4091 3897047 - 3897035 - g 89 -3.3 -5.68039 | opp_overlap 3897035 AAAGCCAGAAAAAAA GGCGA TAT TCCCC GTTCTAAAGATGTCA TERM 4092 3897638 - 3897621 - g 71 -2.7 -4.94243 | CCAAAAAAATGAAAA TGACC AAACAGGA GGTCA AACAAGAGCATAAAA YPTS_3492 3896966 - 3898099 + | flagellar biosynthetic protein FlhB TERM 4093 3899240 - 3899226 - g 76 -10 -3.74178 | overlap 3899214 GAATCAAAGGGTAAA CCGTTG AAC CAACGG CTACGTGGCGTGCGA YPTS_3493 3898089 - 3900182 + | type III secretion FHIPEP protein YPTS_3494 3900268 - 3900393 + | hypothetical protein YPTS_3495 3900439 - 3901008 + | lipoprotein TERM 4094 3901034 - 3901069 + T 100 -12 -4.39426 | opp_overlap 3901031 3901030 ACGGAAGAAGAGGGA TCGCCACAGTAAGC GAGTATGA GATTACTGTGGCGA TTTTATGGCCCTGTA YPTS_3496 3902095 - 3901100 - | hypothetical protein TERM 4095 3902080 - 3902070 - G 91 -3.2 -5.72616 | ATCCACAGAAAAAAA CCAC CGC GTAG GGAAAGAATATTCAT YPTS_3497 3902950 - 3904029 + | periplasmic binding protein TERM 4096 3904058 - 3904041 - T 71 -4.1 -4.87786 | CTAACGGCATAAAAA GCGAC ACTTATTG GTCGC TTGAGGTTATTGACA YPTS_3498 3905344 - 3904241 - | fimbrial protein TERM 4097 3904893 - 3904905 + g 77 -6.3 -4.5448 | AGTTGGACCGTGACT CGATT AGC AATCG TTATTTTTGTCCCTG YPTS_3499 3906088 - 3905369 - | Pili assembly chaperone, N-terminal TERM 4098 3905868 - 3905890 + g 74 -4.1 -4.93316 | CGTTGAACCGGCGGC GTTGCCACT AACGG GGTGGTGAC TTTTTGCTGTTGTTC YPTS_3500 3908586 - 3906106 - | fimbrial biogenesis outer membrane usher protein TERM 4099 3908835 - 3908857 + r 75 -3.4 -5.12707 | opp_overlap 3908836, overlap 3908825 3908836 TATAGTATAAAAAAA ACATGTGG CATTTCT CCACATGC TTTTTTAAAATTTGA TERM 4100 3908856 - 3908836 - R 100 -6.9 -6.00086 | opp_overlap 3908836 3908835 3908825 ATAGTATAAAAAAAA CATGTGG CATTTCT CCACATG CTTTTTTAAAATTTG YPTS_3501 3909420 - 3908890 - | fimbrial protein YPTS_3502 3910149 - 3910355 + | hypothetical protein TERM 4101 3910487 - 3910507 + F 72 -6.3 -4.24404 | opp_overlap 3910482, overlap 3910489 CACCTAAATATACTT TATGAAAAT AGC ATTTTCATG TTTTGAGGTTTACGT TERM 4102 3911057 - 3911038 - g 73 -3.4 -5.0065 | overlap 3911040 TAGTTATAAAGAAAA CTCGACGG TGAT CCCTCGGG CATTAAAAACAGTAA YPTS_3503 3910604 - 3912019 + | glycoside hydrolase family protein TERM 4103 3912080 - 3912068 - f 77 -3.5 -5.09225 | ATTCCACTGAAAAAA TTAAT ATT ATTAA GGAATATATGATGAA TERM 4104 3912465 - 3912455 - g 70 -2.4 -4.84918 | GGCAGAAACATAAAA CCCG TCG CTGG AGCTATTTCATGACA YPTS_3504 3912091 - 3913503 + | fibronectin type III domain-containing protein TERM 4105 3913549 - 3913578 + F 84 -5.1 -5.32396 | gap 1, opp_overlap 3913555 3913556, overlap 3913556 TTAGCGATAAGGTTA ATAAAAGGGTCAGC ATT GCTGGCC-TTTTAC TTTTATTTTTACTCT TERM 4106 3913556 - 3913572 + F 100 -10.1 -4.83677 | opp_overlap 3913555 3913556, overlap 3913549 TAAGGTTAATAAAAG GGTCAGC ATT GCTGGCC TTTTACTTTTATTTT YPTS_3505 3913919 - 3914068 + | hypothetical protein TERM 4107 3914280 - 3914310 + F 100 -13.3 -5.16038 | opp_overlap 3914271 3914272 3914274 GGTAAAGCAGACTCA GCCCTAAGCCTGG TCTCT CCGGTCTTAGGGC TTTTCTTTATTCTCT TERM 4108 3915062 - 3915050 - g 71 -4.8 -4.56597 | TTCTCTCCGGAAAAA CGCT GCTTA AGCG GGCCCGGTGGAACAG YPTS_3506 3914990 - 3915577 + | putative transcriptional regulator, CadC YPTS_3507 3915800 - 3915997 + | hypothetical protein TERM 4109 3916040 - 3916010 - f 76 -9.8 -3.24902 | opp_overlap 3916001 3916014, overlap 3916012 3916014 TAATATTATTAGCAA TATATATGGTAGCC ATC GGCTACCATATTTT TCGCCTCACTATTAG TERM 4110 3916038 - 3916012 - f 93 -12.4 -3.1829 | opp_overlap 3916014, overlap 3916010 3916014 ATATTATTAGCAATA TATATGGTAGCC ATC GGCTACCATATT TTTCGCCTCACTATT TERM 4111 3916036 - 3916014 - f 100 -15 -3.14961 | opp_overlap 3916014, overlap 3916012 3916010 ATTATTAGCAATATA TATGGTAGCC ATC GGCTACCATA TTTTTCGCCTCACTA TERM 4112 3916014 - 3916036 + F 100 -15 -4.62783 | opp_overlap 3916014 3916012 3916010 ATTATTAGCAATATA TATGGTAGCC ATC GGCTACCATA TTTTTCGCCTCACTA YPTS_3508 3916064 - 3916486 + | peptidase A24A prepilin type IV YPTS_3509 3916538 - 3917404 + | hypothetical protein TERM 4113 3917445 - 3917431 - g 83 -2.2 -5.63645 | TTAAAAGATAAAAAA CAAAAT ATA ATTTTA TTCTTGTCTATTGTT YPTS_3510 3917401 - 3918720 + | type II and III secretion system protein YPTS_3511 3918717 - 3919007 + | hypothetical protein TERM 4114 3919566 - 3919537 - g 100 -4.3 -5.96894 | overlap 3919539 ACCCAAATAAAAAAA TCGCCTACCTTGT TATT ACAAGGCAATCAA GGCTCGCAAGATCTC YPTS_3512 3919018 - 3920145 + | hypothetical protein YPTS_3513 3920157 - 3921443 + | type II secretion system protein E YPTS_3514 3921440 - 3922315 + | type II secretion system protein TERM 4115 3922936 - 3922913 - g 88 -8.2 -4.67563 | opp_overlap 3922913 3922912 3922910, overlap 3922927 CAATAGAAATGAAAA TGTTTTGCAG CACA CTGCAATACA GTATTAGTTTTGGCT YPTS_3515 3922312 - 3923145 + | type II secretion system protein TERM 4116 3923157 - 3923171 + G 77 -4.3 -5.0916 | TTAATACTATTATTA TCATC CCAGT GATGA TTTTTCTATTAAGCG YPTS_3516 3923129 - 3923443 + | hypothetical protein YPTS_3517 3923656 - 3923895 + | putative lipoprotein YPTS_3518 3923892 - 3924365 + | TadE family protein YPTS_3519 3924349 - 3924921 + | hypothetical protein TERM 4117 3924970 - 3924990 + GF 87 -4.8 -5.45652 | overlap 3924971 AAAACAATGATAACT TTCATACT AGAGA AGTATGAG TTTTTTATTAAAAAT TERM 4118 3925115 - 3925101 - gf 71 -6.4 -4.1899 | TCACTTTATCCAAAA GAGAGC TAA ACTCTC TGATGCTCTTGAACA TERM 4119 3926336 - 3926363 + GF 70 -9.2 -2.8176 | overlap 3926333 3926331 3926361 GCATAAAAATGGTTT TTATCGGGATTG GCTA CGTTCCCGATAA TAATATTATCGATTG YPTS_3520 3924946 - 3926502 + | hypothetical protein TERM 4120 3926558 - 3926598 + GT 88 -9.7 -4.17316 | opp_overlap 3926558 3926553 3926559, overlap 3926559 TCCTCAAAAACCAAA GTTGATGCAAGCGCGGTAA CAG TCACCGCGCTTGCAAAAAA TTATTTTGCGCCGCT TERM 4121 3926598 - 3926558 - gT 100 -11.9 -4.32046 | opp_overlap 3926558 3926559, overlap 3926553 3926559 TCCTCAAAAACCAAA GTTGATGCAAGCGCGGTAA CAG TCACCGCGCTTGCAAAAAA TTATTTTGCGCCGCT TERM 4122 3926597 - 3926559 - gT 100 -15.4 -3.18505 | opp_overlap 3926558 3926559, overlap 3926558 3926553 CCTCAAAAACCAAAG TTGATGCAAGCGCGGTAA CAG TCACCGCGCTTGCAAAAA ATTATTTTGCGCCGC TERM 4123 3926559 - 3926597 + GT 95 -13.2 -3.09908 | opp_overlap 3926559 3926558 3926553, overlap 3926558 CCTCAAAAACCAAAG TTGATGCAAGCGCGGTAA CAG TCACCGCGCTTGCAAAAA ATTATTTTGCGCCGC YPTS_3522 3927030 - 3926599 - | TonB system transport protein ExbD YPTS_3521 3926468 - 3926653 + | hypothetical protein YPTS_3523 3928071 - 3927034 - | tonB-system energizer ExbB TERM 4124 3928718 - 3928694 - g 83 -5 -5.2696 | gap 1, overlap 3928696 GTAAAAGCGAAAAAA CA-TGCCACGA TCAA TCGGGGCAATG GTGAGTTGTTCTATG TERM 4125 3928715 - 3928696 - g 75 -7.8 -4.24654 | overlap 3928694 AAAAGCGAAAAAACA TGCCACGA TCAA TCGGGGCA ATGGTGAGTTGTTCT YPTS_3524 3928550 - 3929761 + | cystathionine beta-lyase YPTS_3525 3929954 - 3930616 + | SNARE associated Golgi protein TERM 4126 3930663 - 3930647 - T 75 -5.8 -4.65916 | opp_overlap 3930647 TCCAGGTGAATAAAA CGGCAT CTAAT ACGCCG TTTCTATGAAGCCTT YPTS_3526 3931601 - 3930708 - | AraC family transcriptional regulator TERM 4127 3931900 - 3931888 - H 80 -4.8 -5.17353 | ATATTGACGAAAAAA GTGC TCCAG GCAC AGTGATGTGGTTACG TERM 4128 3932092 - 3932075 - g 71 -6.9 -4.21631 | opp_overlap 3932073 3932075 AATTGACTCAAGAAA TCCCGGC GGAT GCCCGGA TATTGATTACCTACG YPTS_3527 3931999 - 3933156 + | iron-containing alcohol dehydrogenase TERM 4129 3933149 - 3933159 + F 76 -6.8 -4.55721 | GTATCTATGAAGCGG CGGT ATA ACCG TTTTATGTAAGATTT TERM 4130 3933240 - 3933210 - f 93 -9.7 -4.2558 | opp_overlap 3933207 TATCTCGTACCAAAA CTGGCGGCATTAC CGCAT GTCATGCTGCCAG TCCTCCTGTTTATAC TERM 4131 3933530 - 3933505 - f 71 -3.4 -4.99645 | overlap 3933523 AGGTCATAAATAAAA TGATAACG ACTAAACTTA CGTTATCA GCAACGGGCTAATAC YPTS_3528 3933575 - 3934408 + | aldo/keto reductase YPTS_3529 3936793 - 3934430 - | radical SAM domain-containing protein TERM 4132 3936132 - 3936156 + g 72 -5.8 -4.36914 | CGCATCACAACGGTG TTACGGACAT CCTGA ATATCCGTAA TTTTCTCACCCGCAG TERM 4133 3936970 - 3936958 - R 78 -9.1 -3.83409 | GTACATATCAGTAAA CCTGC GAA GCAGG CAAGCGAGACATGCG TERM 4134 3937127 - 3937106 - R 72 -7.9 -3.79021 | CAAAACGTGATCAAA GCGTCGGTG CTGC CACCGTCAC TAACTGCCCCGCCGA YPTS_3530 3938525 - 3937101 - | multicopper oxidase type 3 TERM 4135 3938392 - 3938381 - G 93 -7.2 -5.47399 | GCAAGGTTAAAAAAA GCGG TTGG CCGC GGCGAGATTCTAATA YPTS_3531 3938741 - 3938634 - | hypothetical protein YPTS_3532 3939435 - 3938704 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 4136 3939000 - 3939023 + gr 75 -3.2 -5.04987 | TGCGTGTGCCTTCTG GGAACATC CAAATAGA GATGTTTC TTTTTTGCACCTGTT YPTS_3533 3941997 - 3939724 - | DNA topoisomerase IV, A subunit TERM 4137 3940784 - 3940769 - G 73 -4.6 -4.81249 | opp_overlap 3940769 3940768 TCCGAAATGGAAAAA CGCTGC ATCA GTAGCG GTTTAGGATCATCTT TERM 4138 3941208 - 3941244 + g 86 -8 -5.00616 | gap 1, overlap 3941211 3941212 TCGCGCCGGAAACCT GATG-TGGTAACGCCGT GATC ACGGCGCTGCCATCTTC TTTTTTCCACACCGC TERM 4139 3941211 - 3941241 + g 83 -8.3 -4.61482 | gap 1, overlap 3941208 3941212 CGCCGGAAACCTGAT G-TGGTAACGCCGT GATC ACGGCGCTGCCATC TTCTTTTTTCCACAC TERM 4140 3941212 - 3941239 + g 91 -12 -3.91465 | overlap 3941211 3941208 GCCGGAAACCTGATG TGGTAACGCCGT GATC ACGGCGCTGCCA TCTTCTTTTTTCCAC TERM 4141 3941772 - 3941799 + g 83 -4.8 -5.22039 | gap 1, overlap 3941773 GCGGATGATATTTAC CCAGCACGTCACC CAC GGT-ACGGGCTGA TTTTTTGAATTTAGC TERM 4142 3941773 - 3941798 + g 71 -8.3 -3.72139 | gap 1, overlap 3941772 CGGATGATATTTACC CAGCACGTCACC CAC GGT-ACGGGCTG ATTTTTTGAATTTAG YPTS_3534 3942301 - 3942885 + | NAD(P)H dehydrogenase (quinone) TERM 4143 3942892 - 3942918 + T 100 -17.3 -4.4715 | AACAGCTAAGCGGTT CGGCCCTCCTC TCTCT GGGGAGGGCCG TTTTATACGTTACCC YPTS_3535 3943854 - 3942943 - | LysR family transcriptional regulator YPTS_3536 3945753 - 3943858 - | DNA topoisomerase IV, B subunit TERM 4144 3944544 - 3944580 + g 86 -8 -5.00616 | opp_overlap 3944544 3944543, overlap 3944547 CCTGCGAAGTACAAT CTG-CCAGTTTGCCAGGC AGT GCCGGGCCA-CTGGTCAG TTTTTTACGCACCAC YPTS_3537 3946436 - 3945855 - | hypothetical protein YPTS_3538 3947335 - 3946436 - | calcineurin phosphoesterase domain-containing protein YPTS_3539 3947769 - 3947344 - | hypothetical protein YPTS_3540 3948435 - 3947803 - | NUDIX hydrolase TERM 4145 3949446 - 3949461 + G 71 -6.8 -4.30987 | opp_overlap 3949431 GCACTAGAGAGCTTG CGCCAG ATTA CTGGTG TTTATTATCCCGAAT YPTS_3541 3948831 - 3950225 + | TolC family type I secretion outer membrane protein TERM 4146 3950258 - 3950292 + T 100 -10.6 -5.09895 | overlap 3950262 CGTCAGCGGTTTGGC TTCACCGGGCACAGTC ATT GGCTGCGCCCGGTTTA TTTTTTGCCTCCCTC TERM 4147 3950262 - 3950288 + T 100 -15.8 -5.0666 | overlap 3950258 AGCGGTTTGGCTTCA CCGGGCACAGTC ATT GGCTGCGCCCGG TTTATTTTTTGCCTC YPTS_3542 3950460 - 3950290 - | hypothetical protein TERM 4148 3951208 - 3951187 - g 73 -7.3 -4.23723 | gap 1, opp_overlap 3951177, overlap 3951177 CAACATCATCCAAAA CCACCACACG TAG CATG-GGTGG TTAAGGCTGATTAAT YPTS_3543 3950526 - 3951212 + | hypothetical protein TERM 4149 3951442 - 3951417 - g 71 -4.7 -4.58283 | overlap 3951428 CAAGTGGTTGAAAAA GTCATTAACAG CGAT CAGTTACTGAC CAAGTGCCGTATCCC YPTS_3544 3951222 - 3952382 + | glutathionylspermidine synthase TERM 4150 3952420 - 3952384 - T 74 -10.3 -2.57564 | opp_overlap 3952393, overlap 3952383 3952388 3952392 TTATTTTGGGATAAT TATAGTAAGGGAAGGCA ATG CACCTTCCTTTACCATA CCCAAAGTCATTGCC YPTS_3545 3953325 - 3952543 - | extradiol ring-cleavage dioxygenase class III protein subunit B YPTS_3546 3954420 - 3953767 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase YPTS_3547 3954757 - 3954954 + | hypothetical protein YPTS_3548 3954990 - 3955271 + | hypothetical protein YPTS_3549 3956846 - 3955596 - | amino acid permease-associated region TERM 4151 3956789 - 3956771 - G 75 -5.2 -4.8048 | overlap 3956772 CTGGCACAGCAAAAA CCCCCGTC CCC AACAGGGA AGTGGATAACAACCC TERM 4152 3956861 - 3956878 + r 86 -12.7 -2.52464 | CTGCCACATCCTTAT GCGCCAG CGCT CTGGCGC TGACTTAGCCGCGGC YPTS_3550 3958313 - 3956883 - | rfaE bifunctional protein TERM 4153 3957976 - 3957995 + g 70 -7.9 -3.80573 | CGGATTAACTGCTGG TTACGGG AAAGTA CCCGTAA TTTGGTAATGGTCGG TERM 4154 3958123 - 3958110 - G 70 -9.5 -3.18681 | GGTCAACCCGACTAA GCGCG CAAC CGCGC CAAGGGAGGCAATAT YPTS_3551 3961303 - 3958448 - | glutamate-ammonia ligase adenylyltransferase TERM 4155 3958835 - 3958875 + g 81 -11.2 -3.73224 | gap 1 CCGCATTTCGCGGAC TTC-CTGCTGCAACTGCGG ATCT TCGCGGTGGCGGCAGAGAA TTTGCTGGCGAATAG YPTS_3552 3962782 - 3961475 - | adenylate cyclase TERM 4156 3962000 - 3961984 - G 73 -5.1 -4.64657 | overlap 3961986 3961994 CCAAACCGCCAAAAA TAGCCAA CGA TTGGCGA ACCATAGCCAAAGCG TERM 4157 3961998 - 3961986 - G 70 -7.7 -3.9318 | overlap 3961984 3961994 AAACCGCCAAAAATA GCCAA CGA TTGGC GAACCATAGCCAAAG YPTS_3553 3963086 - 3963706 + | SH3 domain-containing protein YPTS_3554 3963738 - 3963881 + | hypothetical protein TERM 4158 3964292 - 3964314 + G 100 -12.7 -4.21275 | overlap 3964291 CCATTGCGCGTTCTG CGGGTGGCA CGCTT TGCCGCCCG TTTTGCCTACCTTGG YPTS_3555 3963884 - 3965122 + | polynucleotide adenylyltransferase/metal dependent phosphohydrolase TERM 4159 3965141 - 3965159 + T 75 -8.8 -3.58343 | opp_overlap 3965156 ACTCCCCGTTCGTTT CCCCCTGT AAA ACAAGGGG TTTCAGACTCCTGCC YPTS_3556 3966176 - 3965358 - | undecaprenol kinase TERM 4160 3966240 - 3966218 - R 100 -8.4 -5.77632 | opp_overlap 3966218 AAAACCACAAAAAAA CGGCAATGCT GAA AACAGTGCCG TTCTATTTAGAATTT YPTS_3557 3966809 - 3966450 - | dihydroneopterin aldolase YPTS_3558 3966917 - 3967567 + | hypothetical protein TERM 4161 3967619 - 3967580 - T 100 -12.1 -4.07885 | overlap 3967587 3967603 TAGTTTTCCCCAAAA CCGAGAATGGCTGCGGC AACACA GCCACAGCCACGCCCAG CCATTCGACACCCCT TERM 4162 3967612 - 3967587 - T 100 -12.6 -3.52113 | overlap 3967580 3967603 CCCCAAAACCGAGAA TGGCTGCGGC AACACA GCCACAGCCA CGCCCAGCCATTCGA TERM 4163 3967661 - 3967603 - T 79 -11.1 -3.06696 | gap 1, overlap 3967587 3967580 GGCTGCGGCAACACA GCCACAGCCACGCCCAGCCATTC-GACA CCCC TATCAGAATGACTGAGCATGAGCGAGGC AAGGCGCAAAGGAAT TERM 4164 3967706 - 3967684 - T 76 -2.7 -5.33921 | gap 1, opp_overlap 3967684, overlap 3967686 3967688 AAAGGAATGAAAAAA CGCAGTGGAC TCTT GTCCA-TGAG TATTTTGAATGACTG TERM 4165 3967738 - 3967719 - T 76 -10.7 -2.72661 | overlap 3967732 GAGTATTTTGAATGA CTGCGGC AACACA GCCGCAG CCACGCTCAGCCATT TERM 4166 3967796 - 3967771 - T 100 -12.6 -3.47841 | overlap 3967787 ACACCCATATCAGAA TGACTGCGGC AACGCA GCCGCAGCCA CGCTCAGCCATTCTG TERM 4167 3967851 - 3967837 - T 76 -9.2 -3.551 | TGGTAACTCAGATAA CGGCCA CCG CGGCCG CACCGACACACTCAA YPTS_3559 3968826 - 3967813 - | glycoprotease family metalloendopeptidase YPTS_3560 3969239 - 3969454 + | ribosomal protein S21 TERM 4168 3969528 - 3969555 + F 100 -13.4 -3.94823 | opp_overlap 3969527 3969528 TAGTTGCATACGAAG GCCGTGCTTTCC GAAA GGAATGCGCGGC TTGTTCTCGTTTATG TERM 4169 3969555 - 3969528 - f 76 -11.2 -2.55668 | opp_overlap 3969528, overlap 3969527 TAGTTGCATACGAAG GCCGTGCTTTCC GAAA GGAATGCGCGGC TTGTTCTCGTTTATG TERM 4170 3971180 - 3971190 + G 74 -6.8 -4.37092 | overlap 3971178 ATTGTAGAGGATATG GTCG AAC CGAC TTTTGTCGACACGCT YPTS_3561 3969590 - 3971338 + | DNA primase TERM 4171 3971386 - 3971367 - f 81 -9.3 -3.87869 | TTAATTGCCGATAAA TGTGGGG GCAACT CCCCACA ATATGCCGCTATAGC TERM 4172 3972231 - 3972206 - g 77 -3.1 -5.24551 | overlap 3972207 GGAAATCAAGAAAAA TGGCCGCAATC ACGC GAATGCTGCCG CTGAAATTCTGAAGC YPTS_3562 3971496 - 3973334 + | RNA polymerase, sigma 70 subunit, RpoD TERM 4173 3973381 - 3973357 - f 78 -4.2 -5.1963 | opp_overlap 3973357, overlap 3973347 GTGAAGTAATAAAAA TCCCGGCATA TTATT TGTGTCGGGA TTTTTTTTCCTATAA TERM 4174 3973357 - 3973381 + F 100 -8.6 -5.90981 | opp_overlap 3973357 3973347 GTGAAGTAATAAAAA TCCCGGCATA TTATT TGTGTCGGGA TTTTTTTTCCTATAA TERM 4175 3973635 - 3973654 + F 100 -8.6 -5.43414 | opp_overlap 3973635 AAATCAGTACATTAA GCCACTTT TAAC GAAGTGGC TTTTTTGTATCTGGT TERM 4176 3974025 - 3974038 + G 76 -2.4 -5.24129 | CCAATTGCTACTCCG TCAC CATATA GTGA TTTTTTATCAGAAGA YPTS_3563 3973776 - 3974606 + | hypothetical protein YPTS_3564 3974936 - 3974739 - | hypothetical protein TERM 4177 3974824 - 3974857 + g 72 -5.9 -4.386 | gap 1, opp_overlap 3974828 3974829, overlap 3974829 3974829 GTTGGCAAAATGCTG CAAAGCCCCAGCCACG GCG CG-GGCTGGCGGATTG TTTTGTAGAAAATTA TERM 4178 3975094 - 3975078 - R 100 -10.8 -5.04385 | GATAGGCGTAAAAAA GCCCGC GCGCG GCGGGC AGATTGGGCGAGATC YPTS_3565 3976767 - 3975112 - | hypothetical protein TERM 4179 3975964 - 3975983 + g 73 -7.8 -4.08767 | GGTCACCGCCTCGCT TGGCCCCT CAAC ACGGGCCA TTTTCGGCAGATGCA YPTS_3566 3977312 - 3976764 - | hypothetical protein TERM 4180 3976907 - 3976919 + gr 82 -6.9 -4.83169 | CCGTTTTACCACCTG CGCGG GCT TCGCG TTTTTCTGACACACT TERM 4181 3977210 - 3977222 + gr 75 -5.5 -4.74801 | CGGTACTCGAAGTCT GGCCA GAT TGGTC TTTTTCCTGAAATTG YPTS_3567 3978009 - 3977278 - | putative phage gene TERM 4182 3977385 - 3977373 - GR 91 -7.7 -4.8048 | TGGCCAGAGTAAAAA CAGCA TCC TGCTG CGGTACGTTCTTTTT YPTS_3568 3978448 - 3977999 - | hypothetical protein TERM 4183 3978192 - 3978205 + g 80 -4.5 -5.00884 | overlap 3978189 TTTGCTTTTGCTTGT GCTGT AAGT GCAGC TTTTTTAGCGGCAAT YPTS_3569 3980081 - 3978450 - | tail fiber repeat 2-containing protein TERM 4184 3979733 - 3979708 - G 75 -3.3 -5.16237 | gap 1, overlap 3979712 AACTCCATTAAAAAA GTAC-GGGTGAT GTT ATTACCCTGCAC CCCGTTAGTGGTGGC YPTS_3570 3980727 - 3980092 - | phage-like protein YPTS_3571 3981904 - 3980720 - | putative phage gene TERM 4185 3981562 - 3981574 + g 70 -7.7 -3.85817 | opp_overlap 3981570 3981573 GAATAACCACATCTT GCTGA ATA TCAGC TTTATAGAAGCGGAT YPTS_3572 3982229 - 3981897 - | putative phage gene YPTS_3573 3984205 - 3982229 - | TP901 family phage tail tape measure protein YPTS_3574 3984659 - 3984393 - | putative phage gene YPTS_3575 3985150 - 3984809 - | hypothetical protein TERM 4186 3985137 - 3985118 - G 70 -7.8 -3.86346 | opp_overlap 3985117, overlap 3985132 CCACCCGGCGACAAA TGCCGCTG CAAT CAGCGCCA ATATCTTGGCCATCA YPTS_3576 3985536 - 3985150 - | hypothetical protein YPTS_3577 3985778 - 3985488 - | holin family protein 2 YPTS_3578 3986240 - 3985788 - | putative phage gene YPTS_3579 3987376 - 3986237 - | putative phage gene TERM 4187 3987188 - 3987198 + g 73 -5.4 -4.63527 | ATTCAGCATCGCAGC GTTG ACA CAAC TTTTTACCGTGCTGG TERM 4188 3987331 - 3987341 + g 83 -2.4 -5.53991 | TCTCTTTGGTTTCGC CCTG TAA CTGG TTTTTTTGGTCAATA YPTS_3580 3988074 - 3987403 - | putative phage gene TERM 4189 3987859 - 3987877 + g 71 -10.2 -2.83345 | opp_overlap 3987848 CAATTTCGGCATGTT GCGCAGCA TCT TGCCGCGC TGGTTGGTCTGTCGC TERM 4190 3987967 - 3987994 + g 71 -4.8 -4.56775 | gap 1, opp_overlap 3987982, overlap 3987967 3987968 CATCACCCCGTACTT G-GCCAGCCGC CATAACA GCCGCTGGCGC TTTTTAGGCGGCAAT YPTS_3581 3988565 - 3988077 - | putative phage gene YPTS_3582 3989014 - 3988562 - | head completion protein YPTS_3583 3989808 - 3989110 - | small terminase subunit YPTS_3584 3990850 - 3989819 - | P2 family phage major capsid protein YPTS_3585 3991759 - 3990905 - | putative capsid scaffolding protein TERM 4191 3991838 - 3991879 + H 74 -6.7 -4.25458 | CGCACTCACCCTATT TCGGTTTGATTCGGATA TAACCCGT TAGCCGAATAAGACCGA TTTATTAATAACGTT TERM 4192 3992761 - 3992742 - g 74 -9.3 -3.65514 | overlap 3992738 GCCAAATTAAATGAA GTGGCCA GTGCCA TGGCCAC CCATGATAAATGGCG YPTS_3586 3991926 - 3993713 + | hypothetical protein YPTS_3587 3993710 - 3994732 + | PBSX family phage portal protein TERM 4193 3995007 - 3994979 - g 72 -6.1 -4.33767 | overlap 3994980 3994981 ATAAACTGATTAAAA CCGTTATAGATTC CAT GAATCCACAACAA CGGCAAATGTTCTTA YPTS_3588 3994783 - 3995049 + | transcriptional activator Ogr/delta TERM 4194 3995296 - 3995320 + T 71 -4.3 -4.76041 | opp_overlap 3995297, overlap 3995297 ATCATATAAAATGAA ATATGGGGT ACTACTA ACCCCATAA TTTTTAATAGATATC TERM 4195 3995319 - 3995297 - T 79 -7.8 -4.30161 | opp_overlap 3995297 3995296 TCATATAAAATGAAA TATGGGGT ACTACTA ACCCCATA ATTTTTAATAGATAT YPTS_3589 3997432 - 3995345 - | replication gene A TERM 4196 3996897 - 3996869 - G 75 -10.4 -3.28924 | gap 1, overlap 3996877 CACTTGTTTGCATAA CCCAACAAGGCAT CTGT ATGCC-CGTTGGG TGCGCTTCCAGAGTT TERM 4197 3997393 - 3997371 - G 93 -12.8 -3.94846 | overlap 3997365 CCATTAAAAGGTAAA GACAGGGATA AAA TATCCCCGTC CATAAAGTCATTTAC YPTS_3590 3997668 - 3997429 - | hypothetical protein TERM 4198 3997726 - 3997699 - R 71 -2.4 -5.1963 | opp_overlap 3997703 3997707, overlap 3997700 TTTAAGTAATAAAAA TCCCCGGCCACC GATG GGAGGCCGTTGG TATTTAGGGTGTTGG TERM 4199 3997703 - 3997722 + r 80 -10.6 -3.46285 | opp_overlap 3997700 3997699, overlap 3997707 AGTAATAAAAATCCC CGGCCACC GATG GGAGGCCG TTGGTATTTAGGGTG YPTS_3591 3998154 - 3997747 - | hypothetical protein YPTS_3592 3998538 - 3998164 - | hypothetical protein TERM 4200 3998479 - 3998493 + g 71 -6.4 -4.15222 | overlap 3998473 CACCCTTGCCCGGCT GTGACT ACC GGTCAC TTTGTTACGGACAAT YPTS_3593 3998744 - 3998541 - | hypothetical protein TERM 4201 3998629 - 3998658 + g 76 -9.1 -3.84961 | CCTAGAAACGTCACT CGACTGGCGCAGG GTTG CCAGCGCTGGCCG TTTGGTAATTCAATC YPTS_3594 3999261 - 3998752 - | regulatory CII family protein YPTS_3595 3999514 - 3999293 - | hypothetical protein YPTS_3596 3999629 - 4000207 + | CI repressor TERM 4202 4000945 - 4000965 + G 77 -2.7 -5.22006 | TAGTCCGAACATGAT TCATAAT TGCAATT ATTATGA TTTTTATTATGGTAA TERM 4203 4001009 - 4001032 + G 71 -8.2 -3.78953 | opp_overlap 4001008 4001015 AAAATTTTCAATTAC GACAAAGCTT CTCC AAGCATTGTC TTTCGTCATAAAAAT YPTS_3597 4000217 - 4001122 + | hypothetical protein TERM 4204 4001109 - 4001122 + F 80 -3.9 -5.38326 | overlap 4001106 TTTATGGTATGTTAT CTATA GATA TATAG TTTTTATTTAGTTAA YPTS_3598 4001154 - 4002209 + | integrase family protein TERM 4205 4002368 - 4002338 - T 100 -9.8 -4.93877 | opp_overlap 4002341, overlap 4002341 GGCCACCAAATAAAA CAAGGAGTTACGTT AAT AGCGTAACTCCTTT GTTGTTTCTGGGATA TERM 4206 4002341 - 4002365 + T 100 -13.7 -4.63048 | opp_overlap 4002338 4002341 CACCAAATAAAACAA GGAGTTACGTT AAT AGCGTAACTCC TTTGTTGTTTCTGGG TERM 4207 4002365 - 4002341 - T 100 -11.5 -4.56436 | opp_overlap 4002341, overlap 4002338 CACCAAATAAAACAA GGAGTTACGTT AAT AGCGTAACTCC TTTGTTGTTTCTGGG YPTS_3599 4003178 - 4002576 - | hypothetical protein YPTS_3600 4003650 - 4003195 - | hypothetical protein YPTS_3601 4004147 - 4003677 - | hypothetical protein YPTS_3602 4005532 - 4004156 - | HNH endonuclease TERM 4208 4004330 - 4004361 + g 71 -10.2 -2.78679 | opp_overlap 4004359, overlap 4004329 ATCTAGCGGTAGTTT GTGGTGTACCTGAT AACC ATCGGGTACAACGC CTTTGGCTAGGACGC YPTS_3603 4005895 - 4005665 - | hypothetical protein TERM 4209 4006565 - 4006550 - g 74 -4 -5.00616 | TTTCTGTGCAAAAAA TTGAGC AGCA ACTCAA ACAAAATCTGGCACA YPTS_3604 4006450 - 4006608 + | hypothetical protein YPTS_3605 4007012 - 4006605 - | filamentation induced by cAMP protein Fic YPTS_3606 4007221 - 4006958 - | hypothetical protein YPTS_3607 4008544 - 4007588 - | LysR family transcriptional regulator YPTS_3608 4008706 - 4009422 + | hypothetical protein YPTS_3609 4009682 - 4009984 + | putative mono-oxygenase ydhR YPTS_3610 4010603 - 4010199 - | endoribonuclease L-PSP TERM 4210 4010330 - 4010305 - G 78 -6.1 -4.82901 | GCGCCCTCATAAAAA GCCCCGATTTG TGCG CAAATTGCGGC CAAATTCGCCGGTGA TERM 4211 4010567 - 4010551 - G 71 -2.9 -4.91511 | ACCGCATGAGAAAAA CCGAATG GCA CACTGGG GTACATCGTCTCGGG YPTS_3611 4011268 - 4010888 - | endoribonuclease L-PSP YPTS_3612 4011911 - 4011279 - | YheO domain-containing protein TERM 4212 4011700 - 4011710 + g 71 -4 -4.7497 | ATGATAAAATCACGT TCTT CCC AAGA TTTTTCATGGATAAG YPTS_3613 4012482 - 4012045 - | hypothetical protein YPTS_3614 4013957 - 4012848 - | Na+/H+ antiporter family protein TERM 4213 4013907 - 4013897 - G 76 -2.4 -5.25699 | opp_overlap 4013904 4013905 ACGACACAATAAAAA GCAG CAT CGGC AGTAATGCCATATTT YPTS_3615 4015182 - 4013950 - | aminotransferase class I and II TERM 4214 4015091 - 4015107 + g 79 -2.2 -5.44721 | opp_overlap 4015091 ATGAGATCCAATACA GCGG TACCAACAT CCGC TTTTTTTACACTGCT YPTS_3616 4015949 - 4016149 + | hypothetical protein TERM 4215 4016241 - 4016212 - g 74 -6.3 -4.39287 | opp_overlap 4016212 TTAACGACAGCAAAA CAGGCGCTATGGC GTGG GCCATTGATCCTG TTATCGGCTATAGCG YPTS_3617 4016146 - 4016481 + | hypothetical protein YPTS_3618 4016491 - 4017540 + | secretion protein HlyD family protein YPTS_3619 4017524 - 4019425 + | fusaric acid resistance protein region YPTS_3620 4019430 - 4020956 + | outer membrane efflux protein YPTS_3621 4023222 - 4021039 - | glycoside hydrolase family 3 protein TERM 4216 4021901 - 4021923 + g 70 -9.9 -3.18383 | gap 1 GTGATCACCTTAACC TCCC-CTGCG ATAG CGCAGAGGGA TTGATAGATCGACAT TERM 4217 4022502 - 4022489 - G 71 -4.5 -4.64766 | overlap 4022490 CCGAGATCGCAAAAA CCGGT CATC ACCGA GCCAACGCCTGCCTC YPTS_3622 4023785 - 4023273 - | hypothetical protein TERM 4218 4023428 - 4023412 - G 82 -12.3 -3.10164 | opp_overlap 4023411 4023413 CGAGCCAGCAGGCAA GTTGCCG CTT CGGCAAC GAAGCGGGTATCAAT YPTS_3623 4024603 - 4023785 - | binding-protein-dependent transport systems inner membrane component TERM 4219 4024085 - 4024072 - G 79 -2.3 -5.42259 | overlap 4024057 4024073 CCACCTTGAAAAAAA TGGTG AATT CACCT GCGCCATCGATCCTG YPTS_3624 4025484 - 4024603 - | binding-protein-dependent transport systems inner membrane component YPTS_3625 4026782 - 4025538 - | extracellular solute-binding protein YPTS_3626 4027845 - 4026859 - | LacI family transcription regulator TERM 4220 4027881 - 4027897 + r 72 -6.5 -4.36914 | opp_overlap 4027881 AAGGAATTTACTATA GCATGAG CCA CTCAGGC TTTTGTAGCGCCACA YPTS_3627 4031307 - 4027954 - | hypothetical protein TERM 4221 4030591 - 4030558 - G 75 -8.1 -4.26792 | overlap 4030551 4030560 ATAGAAACCGTAAAA TACGCTGTCTGCG CTGTCACC CGCGGACAGCGTG ACTGGCTGTAGCTGT TERM 4222 4030589 - 4030560 - G 81 -10.7 -3.72407 | overlap 4030551 4030558 AGAAACCGTAAAATA CGCTGTCTGCG CTGTCACC CGCGGACAGCG TGACTGGCTGTAGCT YPTS_3628 4032505 - 4031390 - | ABC transporter related TERM 4223 4032385 - 4032361 - G 76 -11.5 -2.79023 | opp_overlap 4032365, overlap 4032358 CAAGGCCAGCAATCA TGCGCAACATC GTT GATTTTGCGCA GCCAGAGGGGCCAAC TERM 4224 4032458 - 4032442 - G 72 -10.9 -2.52023 | opp_overlap 4032440 4032439, overlap 4032441 4032439 4032444 TATCCAGATTAATAT CATGCAG AAC CTGCATG CCGTTTGGATATATT TERM 4225 4033469 - 4033457 - g 80 -4.1 -5.24129 | TTGGTCGACAAAAAA CAATG CGT CACTG GGCTACTTCGTTGAT YPTS_3629 4032831 - 4034210 + | hypothetical protein YPTS_3630 4034312 - 4035307 + | hypothetical protein YPTS_3631 4035367 - 4037652 + | outer membrane autotransporter TERM 4226 4037715 - 4037757 + T 81 -7.1 -4.60797 | gap 2, opp_overlap 4037687, overlap 4037704 4037717 4037718 CTTAGGCCGCTGACG GCA--TTCCTACCGCTGTACT CCG AGTGCAGCGGCGGGAGCTTGC TTTTGTATCTGCCAA TERM 4227 4037717 - 4037753 + T 84 -10.1 -3.80768 | overlap 4037715 4037718 TAGGCCGCTGACGGC ATTCCTACCGCTGTACT CCG AGTGCAGCGGCGGGAGC TTGCTTTTGTATCTG TERM 4228 4037718 - 4037752 + T 93 -13.6 -2.87377 | overlap 4037717 4037715 AGGCCGCTGACGGCA TTCCTACCGCTGTACT CCG AGTGCAGCGGCGGGAG CTTGCTTTTGTATCT YPTS_3632 4038246 - 4037920 - | hypothetical protein YPTS_3633 4038635 - 4038387 - | hypothetical protein YPTS_3634 4038957 - 4038640 - | hypothetical protein YPTS_3635 4039245 - 4039117 - | hypothetical protein TERM 4229 4039236 - 4039219 - G 100 -10.5 -5.22312 | opp_overlap 4039218 4039219 ACTTAGAGCAAAAAA CCCAGCC AGTT GGCCGGG ATTCATCATCGAACT YPTS_3636 4039595 - 4039242 - | hypothetical protein YPTS_3637 4041553 - 4039595 - | adhesin/hemagglutinin TERM 4230 4040469 - 4040451 - G 74 -9.5 -3.55444 | opp_overlap 4040457 CTGTCACCTGTCAAA CCACCGG CCAGC CCGGCGG CTAATGTACTCAGTG YPTS_3638 4042146 - 4041646 - | hypothetical protein TERM 4231 4041948 - 4041922 - G 100 -15.4 -3.53811 | opp_overlap 4041904 4041928, overlap 4041928 TTTACCTTTTTCAAA GTCAAAGAATGT TTC ACATTCTTTGAC TGTCAATGTACGACT YPTS_3639 4045379 - 4042146 - | hypothetical protein TERM 4232 4043116 - 4043098 - G 74 -9.5 -3.55444 | opp_overlap 4043104 CTGTCACCTGTCAAA CCACCGG CCAGC CCGGCGG CTAATGTACTCAGTG TERM 4233 4044490 - 4044514 + g 75 -3.5 -5.1615 | gap 1, overlap 4044483 4044493 ACGCCAACGCTACCG CC-ACGGCTG CTGTTA CTGCCGTCGG TTTTTTGCCTATTGG TERM 4234 4045450 - 4045478 + r 70 -3.8 -4.75174 | overlap 4045451 4045453 GAGACCAGCCCTTTG GCAGATCCCAGT GTAGA GCTGGGATCTCA TTTTTAGATTAGGTC TERM 4235 4045453 - 4045475 + r 76 -9.9 -3.28592 | overlap 4045451 4045450 ACCAGCCCTTTGGCA GATCCCAGT GTAGA GCTGGGATC TCATTTTTAGATTAG YPTS_3640 4045787 - 4045482 - | hypothetical protein YPTS_3641 4048358 - 4045794 - | hypothetical protein TERM 4236 4048300 - 4048324 + g 75 -3.5 -5.1615 | gap 1, overlap 4048293 4048303 ACGCCAACGCTACCG CC-ACGGCTG CTGTTA CTGCCGTCGG TTTTTTGCCTATTGG TERM 4237 4048434 - 4048456 + r 74 -9.2 -3.28146 | AATATCGCTACCGGT GATCCCAG AGTGAAG CTGGGATC TTAATACTAGTTTTT YPTS_3642 4049028 - 4048639 - | hypothetical protein YPTS_3643 4049846 - 4049034 - | hypothetical protein TERM 4238 4049978 - 4049947 - R 100 -13.1 -4.70659 | opp_overlap 4049953 4049973, overlap 4049948 4049953 TCTGACAGTTAAAAA GCAAAATCCCGGC TCAGTG GCCGGGATTTTGA TAAAAATTTAAGGTA TERM 4239 4049977 - 4049948 - R 100 -16.6 -3.41913 | opp_overlap 4049953 4049973, overlap 4049947 4049953 CTGACAGTTAAAAAG CAAAATCCCGGC TCAGTG GCCGGGATTTTG ATAAAAATTTAAGGT TERM 4240 4049953 - 4049972 + r 100 -11.4 -4.27192 | opp_overlap 4049953 4049948 4049947 AGTTAAAAAGCAAAA TCCCGGCT CAGT GGCCGGGA TTTTGATAAAAATTT TERM 4241 4049972 - 4049953 - R 100 -10.7 -4.78661 | opp_overlap 4049953, overlap 4049948 4049947 AGTTAAAAAGCAAAA TCCCGGC TCAGTG GCCGGGA TTTTGATAAAAATTT YPTS_3644 4050183 - 4049986 - | hypothetical protein YPTS_3645 4060330 - 4050194 - | filamentous haemagglutinin outer membrane protein TERM 4242 4051152 - 4051134 - G 74 -9.5 -3.55444 | opp_overlap 4051140 CTGTCACCTGTCAAA CCACCGG CCAGC CCGGCGG CTAATGTACTCAGTG TERM 4243 4052526 - 4052550 + g 75 -3.5 -5.1615 | gap 1, overlap 4052519 4052529 ACGCCAACGCTACCG CC-ACGGCTG CTGTTA CTGCCGTCGG TTTTTTGCCTATTGG TERM 4244 4053465 - 4053481 + g 90 -7.9 -5.14965 | overlap 4053432 4053467 TCGCTGCGGGCGGTG GTGCTGG AGA CCAGCCC TTTTTTAGTCCCGGT TERM 4245 4055039 - 4055069 + g 81 -9.6 -4.07133 | opp_overlap 4055051 GCTGTCGCGATCACG TGGGGCGACAATCG CAC CGGGTGCTGCCCCA TTGTTTATCACCGTA TERM 4246 4055495 - 4055510 + g 80 -8.2 -4.4009 | TTGAGTATAACGCCC CCCCGG AATA TCGGGG TTTTCTGCCGTCCAG TERM 4247 4055795 - 4055810 + g 70 -2.4 -4.91712 | overlap 4055788 4055797 AATTACCGGTGCCAA CAGCGC TAGT GTGCCG TTTTTATCCGTTGCA TERM 4248 4059058 - 4059085 + g 76 -9 -3.83205 | overlap 4059059 TGCCGCTAATATTTT TCCCTTGGGCGG TTAG CTGCCCACGGGC TTTAATATCAAGGGT TERM 4249 4059059 - 4059084 + g 80 -12.5 -2.89602 | overlap 4059058 GCCGCTAATATTTTT CCCTTGGGCGG TTAG CTGCCCACGGG CTTTAATATCAAGGG YPTS_3646 4062063 - 4060375 - | polypeptide-transport-associated domain-containing protein TERM 4250 4061368 - 4061387 + g 100 -9.2 -4.74706 | ACCCGAATCATCCAG TGAGGCGG CCAG CCGCCACA TTTTTCGCTGTTGCC TERM 4251 4061626 - 4061638 + g 74 -9.1 -3.69323 | overlap 4061622 CACGACGTTTAGCGC CAGCG TGC CGCTG TTTAAATCCTGCTGC TERM 4252 4061885 - 4061875 - G 73 -2.4 -5.04987 | overlap 4061864 4061876 AATACGGCTAAAAAA GGCC GAG GGCG CAGATAAGCGCACAT YPTS_3647 4062778 - 4063416 + | von Willebrand factor type A YPTS_3648 4063449 - 4064090 + | stress protein YPTS_3649 4064029 - 4064730 + | von Willebrand factor type A TERM 4253 4064734 - 4064768 + F 100 -8.6 -5.626 | opp_overlap 4064737, overlap 4064737 TTGGTACTGTAATTT AAAGGCAAAGCCCC CATTCAC GGCGCTTTGCCTTA TTTTTTTGTCGCATC TERM 4254 4064737 - 4064765 + F 100 -10.3 -4.89054 | opp_overlap 4064737, overlap 4064734 GTACTGTAATTTAAA GGCAAAGCCCC CATTCAC GGCGCTTTGCC TTATTTTTTTGTCGC TERM 4255 4064765 - 4064737 - f 86 -10.3 -3.76125 | opp_overlap 4064737 4064734 GTACTGTAATTTAAA GGCAAAGCCCC CATTCAC GGCGCTTTGCC TTATTTTTTTGTCGC YPTS_3650 4064832 - 4065872 + | von Willebrand factor type A YPTS_3651 4065872 - 4067620 + | hypothetical protein TERM 4256 4067696 - 4067682 - g 74 -6.4 -4.4648 | ACCTGTACGACAAAA GATGGC GAA ACCATC CAGTACGTTGACGAG YPTS_3652 4067652 - 4069151 + | putative kinase protein YPTS_3653 4069542 - 4070111 + | membrane protein TERM 4257 4070282 - 4070241 - f 82 -3 -5.4756 | gap 2 AATTTGAATAAAAAA TCTCATCCGACCACTTGCTG GATT CAGTAAG-GG-CGGCGGAGA TATAACAATAATGGT YPTS_3654 4070324 - 4072345 + | NADH:flavin oxidoreductase/NADH oxidase TERM 4258 4072452 - 4072421 - T 100 -15.2 -3.85879 | overlap 4072411 TAGAACTGAGAATAA TCACAGGGTGTGGC GAAA ACCCCACCCTGTGA AATACCGATTAGAAA YPTS_3655 4073648 - 4072461 - | methyltransferase small TERM 4259 4073753 - 4073735 - H 100 -14.6 -3.54459 | opp_overlap 4073724 4073723 TTAATGCGTTTTAAA CGCGCTTG TGC CAAGCGCG AACCCACACCGCAAG TERM 4260 4074404 - 4074414 + G 71 -4 -4.74103 | opp_overlap 4074392 GCATACGGCCGTTAA TACT GGC AGTA TTTTTACGTTAAAAG TERM 4261 4074649 - 4074631 - g 74 -3.8 -4.8543 | opp_overlap 4074631 GAAGTGCCACAAAAA CCACTGTC GGT GATAATGG TATTCTCTATGTTTC YPTS_3656 4074123 - 4077014 + | outer membrane autotransporter TERM 4262 4077058 - 4077030 - f 100 -11.7 -4.431 | TATCCATTGATAAAA CGATACCTGTGCC TAT GGTGCAGGTATCG ACAGACCGCTAATCC YPTS_3657 4077270 - 4077779 + | hypothetical protein YPTS_3658 4077997 - 4078992 + | oxidoreductase domain-containing protein TERM 4263 4079112 - 4079133 + F 70 -3.7 -4.85653 | gap 1, overlap 4079112 4079113 ACTACAATCTATCGC T-CGGGGCTA CCA TAGCCCCACA TTTATTTTGTATATA TERM 4264 4079348 - 4079323 - f 76 -6.9 -4.44667 | gap 1 GGTGTGAACAATAAA CGCTCA-GCC TCGTTCC GGCTTGAGCG CTATACCCAAAGTCA TERM 4265 4080436 - 4080422 - g 70 -10 -3.17051 | overlap 4080420 GTGCCACCATCAATA TGGCTG GTG CAGCCA TCACCATCACGGTGC YPTS_3659 4079464 - 4080783 + | sodium:dicarboxylate symporter TERM 4266 4080833 - 4080808 - T 83 -9.1 -4.19817 | opp_overlap 4080808 TTTACCTACGCAAAA TGCCAGTCA GTTAAGTT TGACTGGCA TTTTTTTGTTATCAA TERM 4267 4080808 - 4080833 + T 100 -9.8 -5.88565 | opp_overlap 4080808 TTTACCTACGCAAAA TGCCAGTCAG TTAAGT TTGACTGGCA TTTTTTTGTTATCAA YPTS_3660 4081380 - 4080850 - | membrane protein TERM 4268 4081483 - 4081442 - R 75 -8.7 -3.63559 | gap 1, opp_overlap 4081443, overlap 4081440 4081443 ATTAATAAGCAAACA GCGCACTCCCCCTACA-GCT TAA AGTGTGAAGGGGAAGTGCGT TTCCATAAAAAACAG TERM 4269 4081482 - 4081443 - R 83 -12.2 -2.77051 | gap 1, opp_overlap 4081443, overlap 4081442 4081440 TTAATAAGCAAACAG CGCACTCCCCCTACA-GCT TAA AGTGTGAAGGGGAAGTGCG TTTCCATAAAAAACA TERM 4270 4081443 - 4081482 + r 93 -12.2 -3.64703 | gap 1, opp_overlap 4081443 4081442 4081440 TTAATAAGCAAACAG CGCACTCCCCCTACA-GCT TAA AGTGTGAAGGGGAAGTGCG TTTCCATAAAAAACA YPTS_3661 4083023 - 4081533 - | D-galactarate dehydratase/Altronate hydrolase domain-containing protein YPTS_3662 4084485 - 4083034 - | mannitol dehydrogenase domain-containing protein TERM 4271 4083498 - 4083527 + g 71 -2.9 -5.00616 | gap 1 CGTCTTCGGGCAGAT CCAATACCGGAACA ATC TCTTCCG-TAATGG TTTTTTCCACAAAGC YPTS_3663 4086093 - 4084684 - | glucuronate isomerase YPTS_3664 4086839 - 4088143 + | d-galactonate transporter TERM 4272 4088227 - 4088194 - f 79 -11.1 -3.2115 | opp_overlap 4088196 4088201, overlap 4088196 4088201 TAAATGACCTACTAA CATGAAAGCCCGGTA AATT TATCGGGCTTTCATC TCTCCTGTTATCCGC TERM 4273 4088196 - 4088225 + F 100 -15.9 -3.02381 | opp_overlap 4088194 4088196 4088201, overlap 4088201 AATGACCTACTAACA TGAAAGCCCGGTA AATT TATCGGGCTTTCA TCTCTCCTGTTATCC TERM 4274 4088225 - 4088196 - f 100 -13.7 -3.16264 | opp_overlap 4088196 4088201, overlap 4088194 4088201 AATGACCTACTAACA TGAAAGCCCGGTA AATT TATCGGGCTTTCA TCTCTCCTGTTATCC TERM 4275 4088201 - 4088220 + F 84 -10 -3.90358 | opp_overlap 4088201 4088196 4088194, overlap 4088196 CCTACTAACATGAAA GCCCGGTA AATT TATCGGGC TTTCATCTCTCCTGT TERM 4276 4088220 - 4088201 - f 74 -7.8 -3.95022 | opp_overlap 4088196 4088201, overlap 4088196 4088194 CCTACTAACATGAAA GCCCGGTA AATT TATCGGGC TTTCATCTCTCCTGT YPTS_3665 4088406 - 4089200 + | regulatory protein GntR HTH YPTS_3666 4089449 - 4089982 + | putative lipoprotein YPTS_3667 4090260 - 4090958 + | SNARE associated Golgi protein YPTS_3668 4090955 - 4091344 + | hypothetical protein TERM 4277 4091376 - 4091349 - f 91 -12 -3.4759 | overlap 4091350 ACTTAGGATAATCAA CGCTACGGGGAG TCGA CTCCCCGTATCA AACTCGTTCCTCTCA TERM 4278 4091375 - 4091350 - f 93 -13.3 -2.68072 | overlap 4091349 CTTAGGATAATCAAC GCTACGGGGAG TCGA CTCCCCGTATC AAACTCGTTCCTCTC YPTS_3669 4091570 - 4091950 + | hypothetical protein YPTS_3670 4092105 - 4092410 + | protein of unknown function DUF883 ElaB YPTS_3671 4092413 - 4092808 + | hypothetical protein TERM 4279 4092890 - 4092835 - g 77 -6.3 -4.63527 | opp_overlap 4092835, overlap 4092838 CTAGCATTGGAAAAA GAAGCATTACTGCGTGAGATCCAG-CA ACAA CGTCTGGATCTCGCGGA-CAATGCTGC TCGTTGGGTTGAAGT TERM 4280 4092887 - 4092838 - g 74 -6.6 -4.42748 | opp_overlap 4092835, overlap 4092835 GCATTGGAAAAAGAA GCATTACTGCGTGAGATCCAG-CA ACAA CGTCTGGATCTCGCGGA-CAATGC TGCTCGTTGGGTTGA YPTS_3672 4092805 - 4093089 + | hypothetical protein YPTS_3673 4093393 - 4093788 + | DoxX family protein TERM 4281 4093832 - 4093854 + F 100 -8.5 -5.40072 | opp_overlap 4093823 AGTTAATATCAGCGA TACCCTATC CATCC GGTAGGGTA TTTTTTTAAGGGGGA YPTS_3674 4093874 - 4094860 + | putative glutathione S-transferase TERM 4282 4094931 - 4094906 - T 75 -8.9 -3.6284 | AATTAGCACGCTAAA CGCCCTTTTCC CCAA GGCCAAGGGCG TAGCAAGCGAACGTT YPTS_3675 4095884 - 4094991 - | LysR family transcriptional regulator YPTS_3676 4096146 - 4096850 + | pirin domain-containing protein TERM 4283 4096930 - 4096905 - T 83 -11.9 -2.73124 | opp_overlap 4096910 4096911, overlap 4096911 CCCTATCCTGCAAAG CAAAAACCCGC CAAA GCGGGATTTTG TGGCATGAGTGGCGT TERM 4284 4096910 - 4096925 + T 70 -6 -4.40358 | opp_overlap 4096905 4096911, overlap 4096911 TCCTGCAAAGCAAAA ACCCGC CAAA GCGGGA TTTTGTGGCATGAGT TERM 4285 4096911 - 4096924 + T 72 -9.5 -3.23733 | opp_overlap 4096905 4096911, overlap 4096910 CCTGCAAAGCAAAAA CCCGC CAAA GCGGG ATTTTGTGGCATGAG TERM 4286 4096924 - 4096911 - T 100 -9.5 -4.98531 | opp_overlap 4096911 4096910, overlap 4096905 CCTGCAAAGCAAAAA CCCGC CAAA GCGGG ATTTTGTGGCATGAG TERM 4287 4097043 - 4097018 - T 83 -11.9 -2.73124 | opp_overlap 4097023 4097024, overlap 4097024 CCCTATCCTCCAAAG CAAAAACCCGC CGAA GCGGGATTTTG TGGCATGAGTGGCGT TERM 4288 4097023 - 4097038 + T 70 -6 -4.40358 | opp_overlap 4097018 4097024, overlap 4097024 TCCTCCAAAGCAAAA ACCCGC CGAA GCGGGA TTTTGTGGCATGAGT TERM 4289 4097024 - 4097037 + T 72 -9.5 -3.23733 | opp_overlap 4097018 4097024, overlap 4097023 CCTCCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGCATGAG TERM 4290 4097037 - 4097024 - T 100 -9.5 -4.98531 | opp_overlap 4097024 4097023, overlap 4097018 CCTCCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGCATGAG TERM 4291 4097156 - 4097131 - T 83 -11.9 -2.73124 | opp_overlap 4097136 4097137, overlap 4097137 CCTTATCCTGCAAAG CAAAAACCCGC CGAA GCGGGATTTTG TGGAATGAGTGGAGC TERM 4292 4097136 - 4097151 + T 70 -6 -4.40358 | opp_overlap 4097131 4097137, overlap 4097137 TCCTGCAAAGCAAAA ACCCGC CGAA GCGGGA TTTTGTGGAATGAGT TERM 4293 4097137 - 4097150 + T 72 -9.5 -3.23733 | opp_overlap 4097131 4097137, overlap 4097136 CCTGCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4294 4097150 - 4097137 - T 100 -9.5 -4.98531 | opp_overlap 4097137 4097136, overlap 4097131 CCTGCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4295 4097269 - 4097244 - T 83 -11.9 -2.73124 | opp_overlap 4097249 4097250, overlap 4097250 CCCTATCGTGCAAAG CAAAAACCCGC CGAA GCGGGATTTTG TGGAATGAGTGGAGT TERM 4296 4097249 - 4097264 + T 70 -6 -4.40358 | opp_overlap 4097244 4097250, overlap 4097250 TCGTGCAAAGCAAAA ACCCGC CGAA GCGGGA TTTTGTGGAATGAGT TERM 4297 4097250 - 4097263 + T 72 -9.5 -3.23733 | opp_overlap 4097244 4097250, overlap 4097249 CGTGCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG TERM 4298 4097263 - 4097250 - T 100 -9.5 -4.98531 | opp_overlap 4097250 4097249, overlap 4097244 CGTGCAAAGCAAAAA CCCGC CGAA GCGGG ATTTTGTGGAATGAG YPTS_3677 4098573 - 4097674 - | uroporphyrin-III C/tetrapyrrole methyltransferase TERM 4299 4097769 - 4097786 + g 77 -10.5 -3.60762 | overlap 4097771 TGACTCCATGAATTT CTGCCGC TAAT GCGGCGG CTTTTTTCAGCGGTA TERM 4300 4097771 - 4097787 + g 88 -7.2 -5.02074 | overlap 4097769 ACTCCATGAATTTCT GCCGCT AATGC GGCGGC TTTTTTCAGCGGTAA TERM 4301 4098638 - 4098620 - H 80 -2.5 -5.42259 | gap 1, opp_overlap 4098620, overlap 4098623 GCATCTTGAAAAAAA CATCACTG GATA CAGT-ATG CTTTCCTCAACATTC TERM 4302 4098989 - 4098979 - g 76 -8.2 -4.03995 | opp_overlap 4098981 4098982, overlap 4098980 TCGCGCAGAAAAATA CGCC AGC GGCG GCTGATATTCTTGCC YPTS_3678 4098636 - 4100609 + | LppC family lipoprotein TERM 4303 4100765 - 4100777 + G 71 -4.8 -4.56597 | opp_overlap 4100743, overlap 4100743 4100741 CGTCGCCATCTGGAG CGAG CAGGT CTCG TTTTTCAAGCGGCCA TERM 4304 4100788 - 4100822 + G 79 -10 -3.82824 | TCTCGTTTTTCAAGC GGCCAATGTTGCCTTC CGT GGAGGCGAAATTGACC TTATTATGCGTGATG TERM 4305 4100936 - 4100973 + G 73 -7.9 -4.07885 | gap 3, opp_overlap 4100927 4100924 4100928, overlap 4100924 CAACAACGGCTACAT CTGGCCGCCGCTGTT-TG GCTGG CACAAC-GCGGC-GCCAG TTTTGCCACAACATC YPTS_3679 4100708 - 4101061 + | hypothetical protein TERM 4306 4101150 - 4101136 - f 77 -5 -5.00642 | opp_overlap 4101136 CAAGCGAGAGAAAAA TTGGTC TGG AACCAA TTTGAACAGCATTTA YPTS_3680 4101332 - 4101922 + | phosphoheptose isomerase TERM 4307 4102075 - 4102033 - g 85 -7.6 -4.82901 | CGGTTGCCACAAAAA CCGCCACGGATCCACGTACC ATC GGTACGCAGGTAGATGACGG CACACTGGAAGCCAG YPTS_3681 4101933 - 4102508 + | transport-associated TERM 4308 4102581 - 4102536 - T 71 -6.8 -4.11363 | opp_overlap 4102545, overlap 4102529 AAGAAGATTAAATAA GATTTATCACGGGCTTAGCG CTAAAC CGCCAAGCCCGTTTTTTATC CACCACATCGATACC TERM 4309 4102545 - 4102572 + T 100 -12.7 -5.24129 | opp_overlap 4102536 AAATAAGATTTATCA CGGGCTTAGCG CTAAAC CGCCAAGCCCG TTTTTTATCCACCAC YPTS_3682 4103440 - 4102715 - | monofunctional biosynthetic peptidoglycan transglycosylase YPTS_3683 4104090 - 4103437 - | ThiJ/PfpI domain-containing protein TERM 4310 4104314 - 4104331 + r 77 -4.7 -4.96028 | CGCAGTCTTCGCGCA CCCCGGC CTCG GTCAGGG TTATTTTTTTTCAAC YPTS_3684 4106668 - 4104332 - | multi-sensor hybrid histidine kinase YPTS_3685 4106917 - 4106699 - | hypothetical protein YPTS_3686 4107941 - 4106952 - | putative radical SAM protein TERM 4311 4107259 - 4107269 + g 77 -6.8 -4.60924 | opp_overlap 4107254 ATCCCATCAACACCG GTGG TGA CCAC TTTTTCCAAGGTTTC TERM 4312 4109444 - 4109422 - g 73 -9.8 -3.33419 | overlap 4109408 4109420 4109416 ACGGCGAAATCAACA CCATCGCCGG TAA CCGCCAATGG GCCAAGGCGCGTGCC YPTS_3687 4108698 - 4113155 + | ferredoxin-dependent glutamate synthase TERM 4313 4113317 - 4113282 - g 79 -9.6 -3.89695 | opp_overlap 4113293 4113295 TTCTCAGAAACACAA GCCAAAGCACAGGCCG ATCG CTGCCTGTCCTGCGGC AATCCGTACTGTGAA TERM 4314 4113623 - 4113644 + G 95 -15.1 -2.8632 | overlap 4113616 4113614 TGTGGCCGTGATCGG GGCCGGCCC TGCC GGGCTGGCC TGTGCTGATGTATTA YPTS_3688 4113165 - 4114583 + | glutamate synthase, small subunit TERM 4315 4114649 - 4114613 - f 83 -8.8 -4.23647 | gap 1, opp_overlap 4114618, overlap 4114618 AAATCATTCAATAAA CACTAGGGCGGGTTC AATTCACA GAACCCGCCCTT-TG AGGTTATTGACAAAG TERM 4316 4114618 - 4114645 + F 100 -14.2 -3.72051 | opp_overlap 4114613 4114618 ATTCAATAAACACTA GGGCGGGTTC AATTCACA GAACCCGCCC TTTGAGGTTATTGAC TERM 4317 4114645 - 4114618 - f 100 -14.2 -2.94962 | opp_overlap 4114618, overlap 4114613 ATTCAATAAACACTA GGGCGGGTTC AATTCACA GAACCCGCCC TTTGAGGTTATTGAC TERM 4318 4114726 - 4114752 + F 72 -7.2 -3.9749 | gap 1, overlap 4114725 CTTCCCTGGGGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT YPTS_3689 4115183 - 4115668 + | hypothetical protein TERM 4319 4115787 - 4115759 - T 70 -5.2 -4.51238 | gap 1, overlap 4115765 CGCACAAAACAGAAA CGATAAGGGCGGC TAAC GCCGCCCTGAA-G AGATAGAGCCTGTAT TERM 4320 4115782 - 4115765 - T 100 -14.1 -3.69613 | overlap 4115759 AAACAGAAACGATAA GGGCGGC TAAC GCCGCCC TGAAGAGATAGAGCC TERM 4321 4115840 - 4115875 + T 76 -9.6 -3.41602 | gap 1, opp_overlap 4115829 TTAACCACGCGTAAT GCCG-GGCGGCCACCAC TCC GTGGCGGTTGCGGCGGC TTATCATCCGGTGAA YPTS_3690 4116336 - 4115821 - | stringent starvation protein B YPTS_3691 4116983 - 4116342 - | glutathione S-transferase domain-containing protein TERM 4322 4117320 - 4117304 - R 100 -13.7 -5.64274 | opp_overlap 4117304 TCAGGCATAAAAAAA CCCGGTG AGA CACCGGG TTTTTACCATCAATC TERM 4323 4117304 - 4117320 + r 100 -13.7 -4.62783 | opp_overlap 4117304 TCAGGCATAAAAAAA CCCGGTG AGA CACCGGG TTTTTACCATCAATC YPTS_3692 4117749 - 4117357 - | ribosomal protein S9 YPTS_3693 4118192 - 4117764 - | ribosomal protein L13 TERM 4324 4117992 - 4118009 + g 78 -5.5 -4.91712 | CTTGTCTGTACGCTT GTTGCCG GTTA CAGCAAC TTTTTCTGCGTTCAG TERM 4325 4118316 - 4118340 + r 71 -8.8 -3.33162 | opp_overlap 4118320, overlap 4118320 CAATGCTGGCACTAT CAAAGTTTTT GGGAA AAAAACTTTG TTGTAACGTGGGGTC TERM 4326 4118451 - 4118432 - R 81 -11.4 -2.76249 | TAAACATGTTAAGTA CGGACGAC AAAT GTCGCCCG CCATAGAATAGCATT YPTS_3694 4119633 - 4118506 - | AFG1 family ATPase YPTS_3695 4119712 - 4119590 - | hypothetical protein TERM 4327 4119832 - 4119821 - H 71 -4.4 -4.7629 | TTATTAAGTGAAAAA GTTC TGCT GAAC AATGAAGTCAAAAAA YPTS_3696 4119857 - 4120261 + | hypothetical protein TERM 4328 4121252 - 4121224 - g 73 -9.7 -3.35992 | gap 1, opp_overlap 4121226 ACTGATCGGAATTAA TACCGCCATCCT TGCGCC AGG-TGGCGGTA ATATCGGTATCGGCT YPTS_3697 4120532 - 4121905 + | protease Do TERM 4329 4121944 - 4121918 - f 100 -15.2 -4.8543 | opp_overlap 4121909, overlap 4121919 TAATTTGCAGAAAAA TCGGACACAGCA CGA TGCTGTGTCCGC CTAACTCATGCTATT TERM 4330 4121943 - 4121919 - f 100 -18.7 -3.50535 | opp_overlap 4121909, overlap 4121918 AATTTGCAGAAAAAT CGGACACAGCA CGA TGCTGTGTCCG CCTAACTCATGCTAT YPTS_3698 4121932 - 4123083 + | periplasmic serine protease DegS TERM 4331 4123180 - 4123204 + T 100 -8.6 -5.27335 | opp_overlap 4123180 TATAAACATAAAAAA TGCCAGCC CCAATCACC GGCTGGCA TTTTTATTTACCGAA TERM 4332 4123204 - 4123180 - T 100 -8.6 -5.59879 | opp_overlap 4123180 TATAAACATAAAAAA TGCCAGCC CCAATCACC GGCTGGCA TTTTTATTTACCGAA YPTS_3699 4124526 - 4123264 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase YPTS_3700 4124943 - 4124680 - | BolA family protein TERM 4333 4125042 - 4125014 - R 84 -6.1 -5.04868 | gap 1, opp_overlap 4125014 TGAAACTAAAGAAAA GCCCCTGTG-AT GCCATT ATGCACAGGAGC TTGATTATCTTACCT YPTS_3701 4125383 - 4125081 - | anti-sigma B factor antagonist TERM 4334 4125289 - 4125313 + g 86 -12.2 -3.5764 | opp_overlap 4125302 GCCAGCAAGGTTTCA CGCTGTTGCC AAAGC GGTAACAGCG TTTCACGATCCAGTT YPTS_3702 4126042 - 4125419 - | toluene tolerance family protein YPTS_3703 4126612 - 4126055 - | hypothetical protein YPTS_3704 4127399 - 4126617 - | hypothetical protein YPTS_3705 4128435 - 4127617 - | ABC transporter related TERM 4335 4129102 - 4129112 + G 70 -2.4 -4.9645 | overlap 4129100 GTCATCTTGCTCTTG GCTG CTG CCGC TTTTATTGTTCTGAT YPTS_3706 4128700 - 4129674 + | CaCA family Na(+)/Ca(+) antiporter YPTS_3707 4129698 - 4130771 + | KpsF/GutQ family protein YPTS_3708 4131181 - 4131744 + | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YPTS_3709 4131741 - 4132304 + | hypothetical protein YPTS_3710 4132288 - 4132833 + | lipopolysaccharide transport periplasmic protein LptA YPTS_3711 4132840 - 4133565 + | ABC transporter related TERM 4336 4134802 - 4134812 + G 77 -6.8 -4.62336 | opp_overlap 4134768 4134761 GAAATTCTTGCACAG TCCC CGA GGGA TTTTTGAACTGAAGT YPTS_3712 4133627 - 4135060 + | RNA polymerase, sigma 54 subunit, RpoN TERM 4337 4135240 - 4135229 - g 74 -4.4 -4.88646 | AAAAAGTAAAACAAA TTGC AGAA GCAA CGGTACATGTGAATG YPTS_3713 4135084 - 4135371 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 4338 4135461 - 4135422 - f 100 -21.6 -2.88249 | opp_overlap 4135430, overlap 4135430 TACACTCGCTACATA GCCAGATACCGGTGGATA TTTA TTCCCACCGGTATCTGGC GTAAAACAGCGCTTA YPTS_3714 4135490 - 4135972 + | PTS IIA-like nitrogen-regulatory protein PtsN TERM 4339 4136199 - 4136181 - f 74 -10.3 -2.60496 | opp_overlap 4136198 4136198, overlap 4136180 4136178 TGCGGCTCGAAAGAG GGTGGGT TCCGC ACCCACC ACACTCCGGTTTGTA YPTS_3715 4136278 - 4137132 + | hypothetical protein YPTS_3716 4137129 - 4137401 + | phosphotransferase system, phosphocarrier protein HPr TERM 4340 4137626 - 4137642 + F 100 -13.7 -6.32216 | AACCGATCCTGTAAG GCCCCTC GTT GAGGGGC TTTTTTTTTGTCTGT YPTS_3717 4137740 - 4138675 + | aspartate carbamoyltransferase YPTS_3718 4138684 - 4139151 + | aspartate carbamoyltransferase, regulatory subunit YPTS_3719 4139289 - 4139675 + | endoribonuclease L-PSP TERM 4341 4139687 - 4139726 + F 100 -26 -5.06016 | opp_overlap 4139695 4139697 TTAATCCCTCCCCCA TCACCACATACGGCTGGT TATC GCCAGCCGTATGTGGTGA TTTTATTTCTCTCCT TERM 4342 4139718 - 4139695 - f 89 -12.5 -2.82516 | opp_overlap 4139687, overlap 4139697 TCCCCCATCACCACA TACGGCTGG TTATCG CCAGCCGTA TGTGGTGATTTTATT TERM 4343 4139716 - 4139697 - f 79 -10.7 -2.96216 | opp_overlap 4139687, overlap 4139695 CCCCATCACCACATA CGGCTGG TTATCG CCAGCCG TATGTGGTGATTTTA TERM 4344 4140061 - 4140051 - g 80 -6.8 -4.74706 | overlap 4140043 CGCAATAGCCAAAAA TGGC GTC GCCA TCCCATTACCTGATA YPTS_3720 4139974 - 4140450 + | hypothetical protein TERM 4345 4140553 - 4140523 - f 88 -7 -5.15634 | opp_overlap 4140523 CACCGCAGTAAAAAA TACCCTAACG GTGAGAAAATT CGTTAGGGTA TTCCTATGCTGCCAG TERM 4346 4141047 - 4141032 - g 74 -9 -3.63073 | opp_overlap 4141029 4141025 CATATTCTGCAACAA CGCCAT GTTG ATGGCG TGATCCTGTTCGGTT YPTS_3721 4140684 - 4141637 + | LacI family transcription regulator TERM 4347 4141744 - 4141731 - f 79 -6.7 -4.66938 | opp_overlap 4141731, overlap 4141733 ATCTTCAATACAAAA TGGGA ACGT TCCCA TTCCATAAAAATAAA TERM 4348 4142197 - 4142183 - g 76 -7.2 -4.32436 | overlap 4142187 ATAGCATCACCAAAA GAGATT GAA AATCTC TCAATGGTCAAAGGC TERM 4349 4142943 - 4142966 + G 71 -8.8 -3.65143 | overlap 4142941 CGGTGATGACCGGCA GTTTCGCACC GGTC GGTGCGGCAC TATTTGGTTTCCTGT YPTS_3722 4142048 - 4143463 + | PTS system, trehalose-specific IIBC subunit TERM 4350 4143500 - 4143533 + F 75 -5.9 -4.67353 | gap 1, overlap 4143503 4143504 TCGATATAAGTTGTG TTCTCCCGCCAG-CGG TGA TCGTCTGGCGGGGTCA TTTTTCAATGAATAA TERM 4351 4143503 - 4143530 + F 89 -12 -3.26405 | gap 1, overlap 4143500 4143504 ATATAAGTTGTGTTC TCCCGCCAG-CGG TGA TCGTCTGGCGGGG TCATTTTTCAATGAA TERM 4352 4143504 - 4143529 + F 91 -13.3 -2.55361 | gap 1, overlap 4143503 4143500 TATAAGTTGTGTTCT CCCGCCAG-CGG TGA TCGTCTGGCGGG GTCATTTTTCAATGA TERM 4353 4144211 - 4144225 + G 88 -8.5 -4.84359 | overlap 4144213 CCCTAATGATCTGGA CGGCG ATGGC CGCCG TTTTTATACCGATGG YPTS_3723 4143558 - 4145225 + | alpha,alpha-phosphotrehalase TERM 4354 4145310 - 4145344 + F 73 -10 -3.02829 | AGGGCCGGTGATAGG TGACTCCATCAGTGCA AAA TGTCCTGATGGAGCCG TATTCGCAAAATATA TERM 4355 4145509 - 4145541 + F 100 -14.1 -5.30339 | opp_overlap 4145514 CATTAAGCTATTTTC TAACACCCCCTCTCC TAT GGCGTGGGGGTGTTG TTTTTATGTTTTGCT TERM 4356 4145536 - 4145514 - f 76 -10.4 -3.03243 | opp_overlap 4145509 AGCTATTTTCTAACA CCCCCTCTCC TAT GGCGTGGGGG TGTTGTTTTTATGTT TERM 4357 4145644 - 4145657 + G 74 -9.5 -3.54475 | overlap 4145623 GCGTTGCTAGCGCAA CCGGC TTTT GCCGG TTCTGTGGTCGCAAC YPTS_3724 4145578 - 4145988 + | GreA/GreB family elongation factor TERM 4358 4146125 - 4146093 - T 100 -15.7 -3.83921 | opp_overlap 4146087 4146097 GGTAATAGAAGATAA TAGAGGGTAACCGCC GCA GGCCATTACCCTCTA TCGCTCACTTTTATA YPTS_3725 4146636 - 4146250 - | cytochrome b562 YPTS_3726 4147452 - 4146844 - | hypothetical protein TERM 4359 4147001 - 4146988 - G 71 -6.7 -4.24726 | ACAATAAGGGTAAAA CTGAC CAAC GTCAG AATCTAATATAAACA TERM 4360 4147581 - 4147557 - R 100 -15.8 -3.67989 | opp_overlap 4147557, overlap 4147547 AAAAGCGCAGGCAAA CTCGCGGGTA TTTTC TACCCGCGAG TTGTGGAACAGTAAG TERM 4361 4147557 - 4147581 + r 100 -15.8 -3.29511 | opp_overlap 4147547 4147557 AAAAGCGCAGGCAAA CTCGCGGGTA TTTTC TACCCGCGAG TTGTGGAACAGTAAG YPTS_3727 4148952 - 4147612 - | peptidase U62 modulator of DNA gyrase TERM 4362 4148911 - 4148925 + g 73 -10 -3.3344 | TGCAACAGCTTGTTC CAGCGT TTT ACGCTG TTCTGCAACTTGAGT TERM 4363 4149193 - 4149183 - g 83 -2.4 -5.54907 | CCCAGAAAATAAAAA CGAC GAT GACG ATGAGATTATCTGGG TERM 4364 4149298 - 4149285 - g 71 -4.5 -4.57569 | TGATCTGGGTAAAAA TGCAC TCGA GCGCA TCCCATTGGATGAAG TERM 4365 4149370 - 4149355 - g 76 -2.4 -5.30189 | overlap 4149358 CAGAAGATCAAAAAA GAAGGC CGCC GCCGCC AGATCCAGTTGATTG TERM 4366 4149370 - 4149358 - g 73 -4.7 -4.71318 | overlap 4149355 AAGATCAAAAAAGAA GGCCG CCG CCGCC AGATCCAGTTGATTG YPTS_3728 4149133 - 4149681 + | hypothetical protein TERM 4367 4149726 - 4149673 - T 100 -14.6 -4.58283 | gap 1, opp_overlap 4149678 GAACTGGCTGAAAAA CAACAGTAATCGGGCGGG-GCCGGG TCACT CCCGGCTCCCGACTCAATACTGTTG GCGGGCATAATCTAT TERM 4368 4149678 - 4149721 + T 71 -9.5 -3.02144 | gap 1, opp_overlap 4149673 GGCTGAAAAACAACA GTAATCGGGCGGG-GCCGGG TCACT CCCGGCTCCCGACTCAATAC TGTTGGCGGGCATAA YPTS_3729 4150090 - 4149809 - | barstar (barnase inhibitor) YPTS_3730 4150568 - 4150095 - | guanine-specific ribonuclease N1 and T1 YPTS_3731 4152232 - 4150763 - | succinic semialdehyde dehydrogenase TERM 4369 4151996 - 4152015 + g 81 -7.8 -4.56597 | overlap 4151997 4152001 ACGCTGTAAAATCTC TGCTCGCT GTTT AGCGGGCG TTTTTCGCCAGGCAG TERM 4370 4152360 - 4152338 - R 71 -7 -4.22858 | opp_overlap 4152342, overlap 4152342 AGAAGAGAGAAATAA CAAAGACGCC GTG AGCGCCTTTA TGAGGGCTCGAACCG TERM 4371 4152356 - 4152342 - R 75 -5.6 -4.65458 | opp_overlap 4152342, overlap 4152338 GAGAGAAATAACAAA GACGCC GTG AGCGCC TTTATGAGGGCTCGA YPTS_3732 4154454 - 4152499 - | fusaric acid resistance protein region YPTS_3733 4155391 - 4154456 - | secretion protein HlyD family protein YPTS_3734 4155602 - 4155399 - | hypothetical protein TERM 4372 4155540 - 4155526 - G 83 -5 -5.22768 | ACAACAAAAAACAAA GCCAAT GAA ATTAGC AGCTCAAGAAATATC YPTS_3735 4155905 - 4156816 + | LysR family transcriptional regulator YPTS_3736 4157131 - 4157943 + | LysR family transcriptional regulator TERM 4373 4158000 - 4157972 - f 78 -9.1 -3.84185 | CGTAGTTAAATACAA TTTGTTTAACTAA AAT TTAGTTAAACAGA AGATAACAATAAAAA TERM 4374 4158962 - 4158946 - g 85 -5.9 -5.06816 | ATGGCTTAATAAAAA TGCCATT GAA AATAGCA GCAATAAAAATGATC TERM 4375 4160584 - 4160574 - g 85 -5.4 -5.18355 | CTGAAAAATTAAAAA TCCA TCC TGGA ACCATAATTAAAATA YPTS_3737 4158179 - 4160671 + | putative virulence A protein TERM 4376 4160770 - 4160740 - g 71 -2.7 -4.93877 | gap 1, overlap 4160744 4160748 CTGTATTAAATAAAA TTAACGAATCGCGC CGCG ACGC-ATTGGTTAA CTACTATCTTGCTAA TERM 4377 4161533 - 4161518 - g 80 -4.7 -5.00895 | opp_overlap 4161531 TCGAGTATATAAAAA CCATG AAAATA CATGG GTTGAATCCATTAGT TERM 4378 4163433 - 4163418 - g 71 -4.7 -4.59511 | opp_overlap 4163420 AATATGGCGCAAAAA CAGCT GGATTT AGCTG AGTTAGAGCGAGGCC TERM 4379 4164242 - 4164231 - g 76 -2.2 -5.34309 | ACTAGCAAACAAAAA CTGC TGCT GCAA AGCCTGAGCGACATC YPTS_3738 4160712 - 4164290 + | putative insecticidal toxin complex protein TERM 4380 4164331 - 4164312 - f 83 -11.4 -3.06796 | opp_overlap 4164325, overlap 4164314 4164325 CGTTACCTCAGTCAA CAGGCCCC ACAG AGGGCCTG ATAGGAGAGCCCTTT TERM 4381 4165208 - 4165190 - g 75 -6 -4.5442 | CCGGTAATCATAAAA GGAAAATC TTG GAATTTCC GTCAGGACGCCTTCT TERM 4382 4165718 - 4165690 - g 78 -9 -4.09864 | gap 1 AGCCATGGGGGAAAA CGCCACC-TTGAT GGAT ATCAATGGTGACG GCAAGCTGGATTGGG TERM 4383 4166092 - 4166103 + G 73 -7.2 -4.26344 | TTGCTGGCCCAATCT CGGC CATG GCCG TTTTGGTCACCCTAT TERM 4384 4167812 - 4167802 - g 75 -5.4 -4.83169 | AGGGTGGGATAAAAA TAGC TGT GCTA TCACCCAAATGATAT YPTS_3739 4164347 - 4168798 + | virulence plasmid 65kDa B protein TERM 4385 4168812 - 4168838 + F 71 -9.4 -2.90941 | opp_overlap 4168804, overlap 4168834 AATATTAGCCGCAGA GCCTAACCGG CCCCTTC CCGGTCAGGC TCTATACCCTGTCAT YPTS_3740 4168938 - 4169240 + | hypothetical protein YPTS_3741 4169253 - 4169654 + | putative phage-related protein YPTS_3742 4169651 - 4170010 + | hypothetical protein TERM 4386 4170124 - 4170155 + G 71 -4.5 -4.57569 | gap 1, overlap 4170101 4170126 4170127 GCCTGGCGATGGTGC GCTGTAATGCTAAC CGGGA GTCAGCGTTAC-GC TTTTTGCAGCGATAG YPTS_3743 4169997 - 4170170 + | hypothetical protein TERM 4387 4170667 - 4170692 + G 71 -3.1 -4.96848 | opp_overlap 4170660 4170679, overlap 4170679 GCGAGCAAGCCAACG GCGGCCTGAAA ACGG TTACCGACCGC TTTTTCTATGGCGAA TERM 4388 4171327 - 4171300 - g 80 -7 -4.54821 | ACCGTAATCAGAAAA TCGTACCGGAAA CCAC TTACCGCTACGA TGCACTGTATCAGCT YPTS_3744 4170270 - 4173128 + | YD repeat-containing protein TERM 4389 4173144 - 4173171 + T 95 -14.3 -2.88861 | opp_overlap 4173138 4173137, overlap 4173146 TTTATTAATTCGAGG CACCTTCCCTA CTTGAA TAGGGAAGGTG TCTATACCCGTAATA TERM 4390 4173146 - 4173169 + T 79 -11.1 -2.99471 | opp_overlap 4173138 4173137, overlap 4173144 TATTAATTCGAGGCA CCTTCCCTA CTTGAA TAGGGAAGG TGTCTATACCCGTAA TERM 4391 4173254 - 4173297 + T 100 -17.1 -2.79679 | opp_overlap 4173249 4173246 4173248, overlap 4173255 ACTAATATACCGATA CTTTGTTGGCACAAAATTT AATATC AAATTTAGTGCCAACAAAG TCTACTACCCATATT YPTS_3745 4174774 - 4173329 - | peptidase U62 modulator of DNA gyrase YPTS_3746 4175655 - 4174786 - | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YPTS_3747 4179575 - 4175652 - | hypothetical protein TERM 4392 4177107 - 4177128 + g 71 -3 -4.96848 | gap 1 GTTCACCTGAACATG CAGTGG-CA ATGCC TGACCGCTG TTTTTATCTAGCGGC TERM 4393 4178044 - 4178065 + g 85 -10.1 -4.07687 | opp_overlap 4178048 GCATCGGTGGCATCA TACAGGCGG ATGC CCGCCAGTA TTTTCAGCCACGGCT YPTS_3748 4181138 - 4179669 - | ribonuclease YPTS_3749 4181721 - 4181128 - | maf protein YPTS_3750 4182223 - 4181735 - | rod shape-determining protein MreD YPTS_3751 4183215 - 4182220 - | rod shape-determining protein MreC YPTS_3752 4184463 - 4183420 - | cell shape determining protein MreB TERM 4394 4184014 - 4184035 + g 73 -10.1 -3.14878 | opp_overlap 4184008, overlap 4184012 AACAGGCAAGCCCGC GCCAATGGC CGCA GCCATCGGC TCTTCAATTAGGAAC TERM 4395 4184231 - 4184216 - G 75 -6 -4.55295 | opp_overlap 4184215 4184217, overlap 4184217 TCCGTGACAAAGAAA TCGGCG ATAA CGCCGT CTTTCATTGGACGAA TERM 4396 4184230 - 4184217 - G 73 -9.5 -3.32695 | opp_overlap 4184217 4184215, overlap 4184216 CCGTGACAAAGAAAT CGGCG ATAA CGCCG TCTTTCATTGGACGA TERM 4397 4184217 - 4184230 + g 74 -9.5 -3.54146 | opp_overlap 4184216 4184217, overlap 4184215 CCGTGACAAAGAAAT CGGCG ATAA CGCCG TCTTTCATTGGACGA TERM 4398 4184798 - 4184808 + r 84 -2.6 -5.63517 | AGGCTAACATGGCCC TATT ACG AATA TTTTTTCTTTCCGGA YPTS_3753 4186716 - 4184800 - | diguanylate cyclase/phosphodiesterase TERM 4399 4186589 - 4186604 + g 75 -5.4 -4.77165 | GCGGTCACAATACTT TGGAGC CGTT GTTCCA TTTTCTTCTGGCACA TERM 4400 4186965 - 4186978 + H 84 -3.8 -5.4433 | CGCTATATTGGCTCA CCCT TAACAC AGGG TTTTTATTTCTGTCT YPTS_3754 4187117 - 4188094 + | quinone oxidoreductase TERM 4401 4188198 - 4188166 - f 89 -12 -3.26947 | TAATCGTTACAGCAA CCACCGAGGTCAGT TTCAC ACTTGCCTCGGTGG TAAAAATTTCATATT TERM 4402 4189005 - 4188991 - g 71 -4.2 -4.82901 | opp_overlap 4189004 GCCTGGGCAGAAAAA CCGC TTTATTG GCGG GGGACTGGACTACCC TERM 4403 4189031 - 4189066 + G 73 -7.4 -4.14859 | opp_overlap 4189049 TACCCCTATGTCGAA GGGCTGCGGTTGGATG AAGC CATGCACCCGCTGGCC TTTATGGTTGTTGGT YPTS_3755 4188317 - 4189417 + | oxidoreductase molybdopterin binding YPTS_3756 4189417 - 4190037 + | ferric reductase domain-containing protein YPTS_3757 4190299 - 4190751 + | 3-dehydroquinate dehydratase, type II YPTS_3758 4190909 - 4191373 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein YPTS_3759 4191385 - 4192734 + | acetyl-CoA carboxylase, biotin carboxylase TERM 4404 4192789 - 4192830 + T 100 -13.1 -5.26316 | opp_overlap 4192789, overlap 4192790 4192791 GGCCGGTTAATTGAA TTGCCCCCCAATATTGGAT AATA ACCTGATATTGGGGGGCGG TTTTTTATGGCATAA TERM 4405 4192790 - 4192829 + T 100 -14.4 -3.75067 | opp_overlap 4192789, overlap 4192789 4192791 GCCGGTTAATTGAAT TGCCCCCCAATATTGGAT AATA ACCTGATATTGGGGGGCG GTTTTTTATGGCATA TERM 4406 4192791 - 4192828 + T 100 -15.7 -2.84317 | opp_overlap 4192789, overlap 4192790 4192789 CCGGTTAATTGAATT GCCCCCCAATATTGGAT AATA ACCTGATATTGGGGGGC GGTTTTTTATGGCAT TERM 4407 4192859 - 4192891 + T 86 -12.1 -3.20435 | opp_overlap 4192860, overlap 4192860 AAACTGAAGTTAAAA AGCCTGAATTCTGTA GAG TGCGGAATTCAGGCC TTGATGGCTAATTAA TERM 4408 4192890 - 4192860 - T 100 -11.2 -4.75776 | opp_overlap 4192859 4192860 AACTGAAGTTAAAAA GCCTGAATTCTGTA GAG TGCGGAATTCAGGC CTTGATGGCTAATTA TERM 4409 4192860 - 4192890 + T 100 -15.6 -2.5194 | opp_overlap 4192860, overlap 4192859 AACTGAAGTTAAAAA GCCTGAATTCTGTA GAG TGCGGAATTCAGGC CTTGATGGCTAATTA TERM 4410 4192954 - 4192975 + T 75 -2.3 -5.40004 | overlap 4192955 AGCCGTATATCTTAC CTTCAGTTT ATTT AAGCTGAAA TTTTTTAATTTGCTC YPTS_3760 4193156 - 4192980 - | hypothetical protein YPTS_3761 4194216 - 4194458 + | hypothetical protein TERM 4411 4194567 - 4194581 + G 75 -5.6 -4.66938 | ATATTTTATCGGCAA CCGTTC GAT GGGCGG TTTTGTATTGGCGAT YPTS_3762 4194448 - 4195902 + | sodium/pantothenate symporter TERM 4412 4195961 - 4195930 - f 100 -15.9 -2.77148 | overlap 4195927 4195925 4195923 TCTATCAACACATCA GCCGGTATCGTGG TTATGG CCCCGATACCGGC GCTTGAGAGAATTGC TERM 4413 4196658 - 4196626 - g 78 -9.2 -4.09685 | gap 1, opp_overlap 4196618 CTGTATCTGGCAAAA GACCA-GCCCGCAGA ACTA TCTGCTGACGTGGTC GTGGCCAATATTCTG TERM 4414 4196826 - 4196797 - g 71 -7.2 -3.99324 | GCCTATGAGGATAAA TTCATTCTCGAC CCAGTC GCCGAGAAAGAA GAATGGTGCCGCATT YPTS_3763 4195978 - 4196859 + | ribosomal protein L11 methyltransferase YPTS_3764 4197448 - 4198413 + | NifR3 family TIM-barrel protein YPTS_3765 4198438 - 4198734 + | Fis family transcriptional regulator TERM 4415 4198764 - 4198789 + T 75 -2.4 -5.32882 | AATGTTGTTTAAAAA GGCGTTTTCC TTAATT GGTTAGCGCC TTTTTTATAATAATG YPTS_3766 4199964 - 4199488 - | hypothetical protein YPTS_3767 4200704 - 4200030 - | GntR family transcriptional regulator YPTS_3768 4202158 - 4200794 - | major facilitator transporter YPTS_3769 4202707 - 4202312 - | carboxymuconolactone decarboxylase YPTS_3770 4203802 - 4202912 - | 6-phosphogluconate dehydrogenase NAD-binding YPTS_3771 4204679 - 4203867 - | beta-lactamase domain-containing protein YPTS_3772 4205155 - 4205622 + | 17 kDa surface antigen TERM 4416 4205632 - 4205653 + F 70 -5.8 -4.26188 | opp_overlap 4205632 CGCTAAACGTAGCAA CCGGGG GGCACGTTAA CCCCGG TTTTCAGTCTGTAGG TERM 4417 4205657 - 4205693 + F 78 -10.3 -3.33162 | gap 1, overlap 4205658 CGTTAACCCCGGTTT TCAGTCTGTAGGC-TG ATAGCC CATGCCTACGGACTGG TTATCAAATGCCGTA TERM 4418 4205658 - 4205692 + F 80 -11.6 -2.59683 | gap 1, overlap 4205657 GTTAACCCCGGTTTT CAGTCTGTAGGC-TG ATAGCC CATGCCTACGGACTG GTTATCAAATGCCGT YPTS_3773 4205899 - 4206063 + | hypothetical protein YPTS_3774 4206156 - 4206368 + | cold-shock DNA-binding domain-containing protein YPTS_3775 4206628 - 4206840 + | cold-shock DNA-binding domain-containing protein YPTS_3776 4207100 - 4207312 + | cold-shock DNA-binding domain-containing protein TERM 4419 4207413 - 4207392 - f 78 -4.4 -5.12068 | opp_overlap 4207395, overlap 4207395 CATACCGAATAAAAA GAACCTGC CTCCGT GCAGGTTT TTTTGTGCCTATGAC TERM 4420 4207395 - 4207410 + F 100 -6.1 -5.65177 | opp_overlap 4207392 4207395 ACCGAATAAAAAGAA CCTGC CTCCGT GCAGG TTTTTTTGTGCCTAT TERM 4421 4207410 - 4207395 - f 77 -6.1 -4.64495 | opp_overlap 4207395, overlap 4207392 ACCGAATAAAAAGAA CCTGC CTCCGT GCAGG TTTTTTTGTGCCTAT TERM 4422 4207749 - 4207765 + G 71 -2.9 -4.93296 | overlap 4207748 4207750 TCTTAAAAGTGAGAC TCAGGAC CCT GTGCTGG TTTTTATCGTCATGG TERM 4423 4208766 - 4208751 - g 85 -6.2 -5.04082 | overlap 4208740 CAAAGAACAAGAAAA TGTCTT ATCC AAGACA CTTAACATTCTTGAG YPTS_3777 4207648 - 4208823 + | hypothetical protein YPTS_3778 4208813 - 4208929 + | hypothetical protein TERM 4424 4208951 - 4208906 - T 88 -6.8 -5.12707 | opp_overlap 4208906 4208905 TTAAAGCGTAAAAAA CCCGCGCATGGACTGGCC CCATAAAGTT GGACAGTTCATACCCGGG CTTGTCAGGAAAGAT YPTS_3779 4210321 - 4208975 - | hypothetical protein TERM 4425 4210948 - 4210966 + G 71 -6.7 -4.1552 | CCATTCTGCTTTATT TGGCCGA TAAAT TCGGTCA TTTCTTACCAAAATC YPTS_3780 4210572 - 4211426 + | glutathione S-transferase domain-containing protein TERM 4426 4211466 - 4211491 + T 86 -9 -4.32857 | gap 1, opp_overlap 4211466 GACTTGATAAAAAAA CACCGC-GCGG CCATA CCGTTGCGGTG TTTCTCTTTCACGCG TERM 4427 4211491 - 4211466 - T 100 -7.5 -5.626 | gap 1, opp_overlap 4211466 GACTTGATAAAAAAA CACCGC-GCGGC CAT ACCGTTGCGGTG TTTCTCTTTCACGCG YPTS_3781 4212130 - 4211525 - | sugar isomerase (SIS) YPTS_3782 4213764 - 4212127 - | FGGY-family pentulose kinase YPTS_3783 4214736 - 4213783 - | inner-membrane translocator YPTS_3784 4215727 - 4214738 - | inner-membrane translocator TERM 4428 4215703 - 4215686 - G 73 -5.5 -4.55118 | opp_overlap 4215693 CAACCCGAGATAAAA CTCATGG TGCC CCGTGAG TTGGCGCAGTTTTAG YPTS_3785 4217216 - 4215720 - | ABC transporter related YPTS_3786 4218409 - 4217420 - | periplasmic binding protein YPTS_3787 4219216 - 4220136 + | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase TERM 4429 4220910 - 4220878 - g 88 -8.4 -4.74801 | opp_overlap 4220877 4220878 TAATCTGAGCAAAAA GCGGCCATTAACGC GAAAT GCGTTAGTCACCGC CTTTGGTGAACCCAT YPTS_3788 4220288 - 4221475 + | hypothetical protein TERM 4430 4221684 - 4221667 - T 82 -10.5 -3.61268 | CATGTAATCGGTAAA CGGGGCC AAAT AGCCCCG TCCGTAAGATATTAA YPTS_3789 4223345 - 4221696 - | Na+/H+ antiporter TERM 4431 4223542 - 4223506 - R 76 -9.3 -3.45514 | overlap 4223500 4223507 GATATATAACATTAA GTTCACATCGGGGAGGA TAA TCCCCCCCGATGCCTGC AACCAATTGTTATTA YPTS_3790 4225081 - 4223726 - | xanthine/uracil/vitamin C permease TERM 4432 4224180 - 4224157 - G 71 -4.6 -4.64657 | gap 1, opp_overlap 4224178, overlap 4224159 CCAAACCCGCAAAAA TG-CTACTGAC GGA GTCAGTGGTCA GCGCTTTACCACCGC TERM 4433 4224909 - 4224896 - G 70 -8.1 -3.86346 | opp_overlap 4224903, overlap 4224898 GCAGGTCGCGACAAA CACCG CCGT CGGTG GGAAACCGGCTTTGC TERM 4434 4225423 - 4225464 + H 88 -11.1 -3.75015 | gap 1, opp_overlap 4225417 4225426 4225428, overlap 4225427 GAATAAACATCGCTC AAACACCTTATTGTAGCTAC ATC GTAGCTACAATAAGG-GTAA TTTAATGGAGGTTAT TERM 4435 4225461 - 4225426 - H 100 -17.2 -3.58329 | gap 1, opp_overlap 4225423 4225427, overlap 4225417 4225428 TAAACATCGCTCAAA CACCTTATTGTAGCTAC ATC GTAGCTACAATAAGG-G TAATTTAATGGAGGT TERM 4436 4225427 - 4225461 + H 100 -17.4 -2.96873 | opp_overlap 4225426 4225417 4225428, overlap 4225423 AAACATCGCTCAAAC ACCTTATTGTAGCTAC ATC GTAGCTACAATAAGGG TAATTTAATGGAGGT TERM 4437 4225460 - 4225428 - H 100 -20.9 -3.36341 | opp_overlap 4225427 4225423, overlap 4225426 4225417 AACATCGCTCAAACA CCTTATTGTAGCTAC ATC GTAGCTACAATAAGG GTAATTTAATGGAGG YPTS_3791 4225536 - 4225739 + | RelB antitoxin TERM 4438 4225795 - 4225778 - T 70 -2.7 -5.00884 | AGCCGCTTTAAAAAA GATGCAA AGCG TTACACC AAGAATAAAAAGGCG TERM 4439 4225904 - 4225878 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 4225887, overlap 4225879 4225894 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4440 4225905 - 4225879 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 4225887, overlap 4225878 4225894 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPTS_3792 4227173 - 4226358 - | ABC transporter related TERM 4441 4226740 - 4226716 - G 100 -11.3 -4.57882 | TCCAACAACAATAAA CGGGGGCGATG GAT CAGCGCCCGCG CCAGTGCAACACGTT YPTS_3793 4227964 - 4227170 - | binding-protein-dependent transport systems inner membrane component YPTS_3794 4229124 - 4227976 - | luciferase-like monooxygenase TERM 4442 4229018 - 4228996 - G 70 -9.9 -3.1332 | gap 1, opp_overlap 4228994 CAACACACCACCGAA CCCAAGCCGG TCAG CCG-CTTGGG CAATTTGCTGTAGAT YPTS_3795 4230249 - 4229143 - | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein YPTS_3796 4230845 - 4230264 - | NADPH-dependent FMN reductase YPTS_3797 4231316 - 4232017 + | deoxyribose-phosphate aldolase TERM 4443 4232369 - 4232389 + G 83 -11.9 -3.58536 | GAGGTCGCCTATGCG GGTGTCGTC GGT GATGACACC TTTGGCCATGAATTT YPTS_3798 4232198 - 4233127 + | ribokinase-like domain-containing protein YPTS_3799 4233133 - 4233636 + | RbsD or FucU transport YPTS_3800 4234662 - 4233796 - | AraC family transcriptional regulator YPTS_3801 4234932 - 4236062 + | oxidoreductase domain-containing protein YPTS_3802 4236059 - 4236958 + | xylose isomerase domain-containing protein TERM 4444 4237017 - 4236995 - T 100 -4 -6.14618 | opp_overlap 4236996, overlap 4236996 TATAAAACAAAAAAA TGTGGCTGGC TAA ACCAGTCACT TTGTATAACTAAAAA TERM 4445 4236996 - 4237016 + T 80 -9 -4.0641 | opp_overlap 4236996 4236995 ATAAAACAAAAAAAT GTGGCTGG CTAAA CCAGTCAC TTTGTATAACTAAAA TERM 4446 4237016 - 4236996 - T 75 -7.5 -4.25111 | opp_overlap 4236996, overlap 4236995 ATAAAACAAAAAAAT GTGGCTGGC TAA ACCAGTCAC TTTGTATAACTAAAA YPTS_3803 4237468 - 4237235 - | putative rhs accessory genetic element TERM 4447 4237659 - 4237628 - R 88 -9.7 -4.17048 | gap 1, opp_overlap 4237628 4237632 CTGCCTTTAAAATAA GTAAGCCAAAATCT GAAGG AG-TTTTGGCTTAC TTGTCGACTTTAAAG TERM 4448 4237628 - 4237659 + r 78 -10.4 -3.39668 | gap 1, opp_overlap 4237628, overlap 4237632 CTGCCTTTAAAATAA GTAAGCCAAAA-TCT GAA GGAGTTTTGGCTTAC TTGTCGACTTTAAAG YPTS_3804 4237950 - 4237669 - | hypothetical protein TERM 4449 4237878 - 4237922 + g 100 -6 -5.64006 | ATGTCTGAACCTCAT TAAAATTATCTATAGCTTGA TTAAT TCCATCTATAGCTAATTTTA TTTTTTTCATTGCAT YPTS_3805 4242509 - 4237947 - | YD repeat-containing protein TERM 4450 4239002 - 4239014 + g 73 -4.7 -4.69027 | overlap 4238983 4239006 AGCGCCACAGCTGTG GCCGG TAG CCGTC TTTTTGGCTGCGTTT TERM 4451 4241560 - 4241577 + g 70 -2.5 -5.00616 | overlap 4241561 TTATGGGTAGCGTTG ACCGCGG TATT CGGCGGC TTTTTTAAGGAGCGA YPTS_3806 4242976 - 4242554 - | hypothetical protein TERM 4452 4242795 - 4242809 + g 75 -11.4 -2.74144 | overlap 4242794 TAGTGATTTAATTGC CGGCTC AGA GAGCCG ATTTCCCGGTCAAAG YPTS_3807 4245177 - 4242979 - | type VI secretion system Vgr family protein TERM 4453 4243211 - 4243190 - G 73 -5.1 -4.65916 | gap 1, opp_overlap 4243190, overlap 4243192 TTCACCTGAATAAAA TTCG-CGCAG GTA CTGCGACGCA CTTTGATCGTCTCGG TERM 4454 4243711 - 4243690 - G 70 -2.1 -4.85599 | opp_overlap 4243691 4243693, overlap 4243691 GCGATCCCATAAAAA TTGCAGGCG GATG CGCCCGTAT TCGTCGCAGTAAATC YPTS_3808 4246512 - 4245199 - | ImpA domain-containing protein TERM 4455 4245285 - 4245297 + g 75 -10.5 -3.39449 | opp_overlap 4245283 4245285 TTTGTTTTATCAAGA CCGGC GAG GCCGG TTGATGTTCATCGGC TERM 4456 4245297 - 4245285 - G 73 -10.5 -3.13403 | opp_overlap 4245285, overlap 4245283 TTTGTTTTATCAAGA CCGGC GAG GCCGG TTGATGTTCATCGGC TERM 4457 4246281 - 4246291 + g 79 -2.4 -5.47218 | opp_overlap 4246281 AGCCCTCGGTGAAAC CGGC CAG GCCA TTTTTTTGGGTGCGG YPTS_3809 4250170 - 4246637 - | type VI secretion protein IcmF TERM 4458 4247486 - 4247504 + g 77 -8.8 -4.18018 | overlap 4247487 CGCCTTCAACGCCGC TTTGCCCG GCG CGGGCGAG TTTTGGATCGCCAAC TERM 4459 4247487 - 4247503 + g 73 -10.1 -3.10597 | overlap 4247486 GCCTTCAACGCCGCT TTGCCCG GCG CGGGCGA GTTTTGGATCGCCAA TERM 4460 4248803 - 4248828 + g 91 -6.9 -5.24129 | CAGGGCACCCACCCC CGAGAAAATGA ACAT TCGCTTTCTCG TTTTTTGTAGCCAGA TERM 4461 4249839 - 4249853 + g 71 -2.8 -4.91084 | AGTTGGTGCTTCCAG CCATTG AGG TAGTGG TTTTGTTGTTCGATA TERM 4462 4250115 - 4250093 - G 84 -12.8 -3.23711 | opp_overlap 4250093 4250092, overlap 4250085 CGCACAAGCCATCAA CGCCAATACC ACC GGTATTGACG CTTTAAGGCGAGGAA YPTS_3810 4251590 - 4250202 - | type VI secretion-associated protein TERM 4463 4251051 - 4251017 - G 71 -10.1 -2.78463 | gap 1, overlap 4251047 AGGTGTTGGATGAGA GCGGTTCATCAGAAGC CACT GCTTC-GATAACCCGC TCCGGTGGCCGCGCA YPTS_3811 4252282 - 4251596 - | hypothetical protein YPTS_3812 4253076 - 4252279 - | Fis family transcriptional regulator TERM 4464 4252343 - 4252355 + g 75 -6.2 -4.54821 | GATAGCCCCAAACTG GCCG CAATA CGGC TTTTGTCATTACCGT YPTS_3813 4255676 - 4253073 - | type VI secretion ATPase TERM 4465 4253130 - 4253156 + g 76 -8.6 -4.08706 | overlap 4253126 TACCGCGATCCGAAT GTGGCTGATAGC GGT GCCAGCGGCCAC TTTCTGTAATAACAA TERM 4466 4254916 - 4254926 + g 73 -3.2 -4.83615 | AGCGTCATCAACTCG CTGT TAC GCAG TTTTTCTGGCACCTG YPTS_3814 4256454 - 4255687 - | membrane protein YPTS_3815 4257800 - 4256454 - | type VI secretion protein TERM 4467 4257028 - 4257009 - G 71 -6.4 -4.15453 | CAACTGATGGTAAAA CGCTTCTG GATG CAGAATCG CCTGATGTGCCAAAT YPTS_3816 4258348 - 4257803 - | lipoprotein YPTS_3817 4259664 - 4258348 - | FHA domain-containing protein TERM 4468 4259641 - 4259652 + g 76 -2.2 -5.28778 | overlap 4259635 GACGACCCGCAATGA CAGC GTTG GTTG TTTTTTATCCATGGT YPTS_3818 4260878 - 4259790 - | type VI secretion protein YPTS_3819 4262662 - 4260842 - | type VI secretion protein TERM 4469 4262456 - 4262487 + gr 73 -2.4 -5.00884 | gap 1, opp_overlap 4262457 4262460, overlap 4262457 4262460 CAACATATTCAGTAA ACCATGAGTCAATTC AGG GAATTGA-TCATCGA TTTTTTCACGCAGGT YPTS_3820 4263102 - 4262662 - | type VI secretion system lysozyme-related protein YPTS_3821 4264590 - 4263109 - | EvpB family type VI secretion protein TERM 4470 4263432 - 4263446 + g 76 -8.6 -3.97406 | overlap 4263423 4263444 ACGGCAGTTGCGTGC CCAACT TGT AGTTGG TTTCTGCCATTTTCC TERM 4471 4263906 - 4263887 - G 73 -8.6 -3.80094 | GTCAAACCAAGATAA CGTGAATC TTCA GACTCACG CAGAGCACGCCATTT YPTS_3822 4265155 - 4264658 - | type VI secretion protein TERM 4472 4264795 - 4264822 + g 82 -5.6 -5.01732 | CTAGCGCTTCCCGTA GTTCCAGAATTT TTTT GAGCTCTGGAAC TTTTTTCGCCACATT YPTS_3824 4266358 - 4266140 - | hypothetical protein YPTS_3823 4265679 - 4266197 + | Hcp1 family type VI secretion system effector TERM 4473 4266210 - 4266239 + gT 100 -13.7 -4.7871 | overlap 4266211 TAATATTGTATTTCT TCAGCAGCCAATG AGGT TATTGGCTGCTGG TTTTTACTGATGGTT TERM 4474 4266211 - 4266238 + gT 100 -15 -3.46141 | overlap 4266210 AATATTGTATTTCTT CAGCAGCCAATG AGGT TATTGGCTGCTG GTTTTTACTGATGGT YPTS_3825 4266627 - 4266349 - | hypothetical protein TERM 4475 4267066 - 4267049 - R 100 -12.7 -5.41359 | AACCAAACGAAAAAA GGTGCGC CAAG GCGCACC AACCATCCAGCCATA YPTS_3826 4268010 - 4267099 - | maltose operon periplasmic TERM 4476 4267593 - 4267620 + g 73 -4.9 -4.7497 | gap 1, overlap 4267586 ATTTCATCACGCCTT GCAGGCGATCAT TGATC ATGAT-GCCCGC TTTTTCATAGGTGAA TERM 4477 4267782 - 4267772 - G 77 -8.2 -4.28774 | GCAGGCAAGGCAAAA GCGG CTA CCGC GCCTTCAACCTCACC TERM 4478 4267822 - 4267808 - G 83 -11.4 -3.52906 | opp_overlap 4267807, overlap 4267806 TCACCCTGAGAAATA TGCGGG CTG CCCGCA GTAAGTTGAATATCT TERM 4479 4268239 - 4268220 - R 80 -11.4 -2.66969 | overlap 4268216 4268217 CATCAAGATAACGTA CAGCCGCC CGCA GACGGCTG AAGAATCGCTGTTAC YPTS_3827 4269522 - 4268251 - | porin LamB type YPTS_3828 4270702 - 4269593 - | ABC transporter related TERM 4480 4270474 - 4270494 + g 72 -11.1 -2.64466 | opp_overlap 4270468, overlap 4270473 GAAACACCATGCCAA TGCCGCGCT CAG AGGGCGGCA CTTCATTCATGCGTT YPTS_3829 4271052 - 4270690 - | glycosidase TERM 4481 4271787 - 4271825 + G 73 -7.5 -4.2828 | gap 1, opp_overlap 4271777 ACAAGTCGCCGCAAC CGGTGAT-GGCCCGGA CATTATCT TCTGGGCCCATGACCG TTTTGGTGGCTACGC YPTS_3830 4271530 - 4272741 + | extracellular solute-binding protein TERM 4482 4272780 - 4272759 - f 95 -11.5 -3.87815 | GTCTACTCTGAGAAA GGGGCACGG TTCG CCGTGCCTC GACAGAATTTGCCAT TERM 4483 4272985 - 4272971 - g 79 -2.1 -5.42198 | gap 1, overlap 4272972 GCCGAAAAAAGAAAA TC-GCC TGGT GGCAGA GTGATGCGCTTAAAT YPTS_3831 4272928 - 4274505 + | binding-protein-dependent transport systems inner membrane component YPTS_3832 4274519 - 4275409 + | binding-protein-dependent transport systems inner membrane component TERM 4484 4275487 - 4275507 + T 100 -9.6 -5.24799 | overlap 4275488 GGTACTGTGTCTTTA GGGCGGCC TTAAT GGCCGCCA TTTTTATGTTTATCA TERM 4485 4275488 - 4275506 + T 100 -13.1 -3.73253 | overlap 4275487 GTACTGTGTCTTTAG GGCGGCC TTAAT GGCCGCC ATTTTTATGTTTATC YPTS_3833 4275959 - 4275552 - | phosphate-starvation-inducible E TERM 4486 4275883 - 4275869 - G 83 -4.2 -5.52384 | overlap 4275848 CCTTCACCAAAAAAA CCACCA AAA TAGCGG CTAACATAATCAATC TERM 4487 4276054 - 4276032 - g 100 -10.6 -5.86332 | TCAAGCCAAAAAAAA GGCCCCTTAC AGA ATAAGAGGCC TAATAAAGTACAGAT YPTS_3834 4275981 - 4276097 + | hypothetical protein YPTS_3835 4277740 - 4276094 - | phosphoglucose isomerase (PGI) TERM 4488 4277455 - 4277474 + g 85 -11.4 -3.75115 | opp_overlap 4277448 4277455 4277453, overlap 4277452 GAGCAATATGCAATA CCGCACGG TCTT CTGTGCGG TTAATTTTCTCACCA YPTS_3836 4278110 - 4279495 + | aspartate kinase TERM 4489 4279742 - 4279724 - f 74 -4.5 -4.89393 | opp_overlap 4279724, overlap 4279714 4279713 TAAACCTCAGAAAAA TGCCTGA GATCA TCGGGCA TTCACTGCTAACACG TERM 4490 4281601 - 4281590 - g 78 -5.8 -4.72272 | opp_overlap 4281596, overlap 4281591 CGTCTCCAGCAAAAA CCAC AGGG GTGG GTCAGCGCTATGGGG YPTS_3837 4279976 - 4281751 + | hemolysin activator HlyB domain-containing protein TERM 4491 4285214 - 4285181 - g 85 -10.9 -3.9344 | AAGCCGAACAGTAAA GACTTTGGCGGCGGC TTGG GCGGCGGCCATAGTC AAGGCAGCACCAGTG TERM 4492 4285915 - 4285891 - g 71 -4.4 -4.67982 | gap 1, overlap 4285894 TGTGACGCAACAAAA CACCCATATCA ACAG TGATA-AGGTG ACCCTGAGCAGTGCT TERM 4493 4286225 - 4286212 - g 75 -8.1 -4.23781 | CTTAGGAAAAGCAAA GGACG ATAG CGTCC AGACCATCAGCTATA YPTS_3838 4281821 - 4286728 + | filamentous haemagglutinin outer membrane protein TERM 4494 4286799 - 4286746 - T 80 -8.9 -3.967 | opp_overlap 4286755, overlap 4286754 4286759 AATCCATTAATTAAA CTGTAATATCGAAGGGGATAAACCA ATCA CGGTTTATCCCCCTCGTTAGATCAA CATTATCTCGCCTTT TERM 4495 4286791 - 4286754 - T 100 -15.7 -3.13784 | opp_overlap 4286755, overlap 4286746 4286759 AATTAAACTGTAATA TCGAAGGGGATAAACCA ATCA CGGTTTATCCCCCTCGT TAGATCAACATTATC TERM 4496 4286755 - 4286790 + T 100 -16.3 -3.0701 | opp_overlap 4286754 4286746 4286759 ATTAAACTGTAATAT CGAAGGGGATAAACC AATCAC GGTTTATCCCCCTCG TTAGATCAACATTAT TERM 4497 4286786 - 4286759 - T 100 -15 -3.19293 | opp_overlap 4286755, overlap 4286754 4286746 AACTGTAATATCGAA GGGGATAAACCA ATCA CGGTTTATCCCC CTCGTTAGATCAACA YPTS_3839 4290519 - 4286824 - | methionine synthase TERM 4498 4287778 - 4287813 + g 88 -7.5 -5.0133 | opp_overlap 4287798 CACCGTTGGGTTATT CCGTGCAGCCTGC AAACTGACCG GCGGGGTGCGCGG TTTTTTACGGGCATG TERM 4499 4288581 - 4288593 + g 74 -4.1 -4.9218 | CGACCTCGCCACTTT TACTG TCA CGGTA TTTTTCTGCTAAATC TERM 4500 4290939 - 4290954 + G 73 -4.6 -4.71828 | ACCGTTTACTCACGA CCATGC AACA GCAGGG TTTTGTTCGTCAGGT YPTS_3840 4290734 - 4291576 + | IclR family transcriptional regulator YPTS_3841 4293456 - 4291696 - | isocitrate dehydrogenase kinasephosphatase TERM 4501 4291853 - 4291834 - G 74 -2.8 -5.0133 | gap 1 CATCTCCTCAAAAAA GTG-CCTGA CTT TCCGGTCAC TGCATAAGAAATGGC TERM 4502 4293337 - 4293323 - G 71 -7.1 -4.07568 | TCGGCCTGCTCAAAA CGGTG TTGAG CACCG GCAGTGACCTCCAGA TERM 4503 4293468 - 4293445 - G 95 -12.4 -4.4009 | overlap 4293446 CCCTACCGTACAAAA CGGAGCCTGC ATAA GCAGGCTCCT GATAAGACCACACTC TERM 4504 4293467 - 4293446 - G 100 -15.9 -3.23733 | overlap 4293445 CCTACCGTACAAAAC GGAGCCTGC ATAA GCAGGCTCC TGATAAGACCACACT YPTS_3842 4294803 - 4293496 - | isocitrate lyase YPTS_3843 4296448 - 4294850 - | malate synthase A TERM 4505 4295837 - 4295826 - G 73 -7.2 -4.27843 | opp_overlap 4295829, overlap 4295823 GGCAAATAGAAATAA GGGC CGCT GCCC TTCGCCAGCAGTTGC TERM 4506 4296824 - 4296804 - R 70 -7.5 -3.8165 | opp_overlap 4296803, overlap 4296802 GGGAAGAAAATAATA GGCGGCC TCGATTC AGCCGCC ATAATTAGCATCTAT YPTS_3844 4297798 - 4296869 - | homoserine O-succinyltransferase YPTS_3845 4297866 - 4298138 + | hypothetical protein TERM 4507 4298527 - 4298495 - T 100 -13.6 -4.62783 | gap 1, opp_overlap 4298495 4298502, overlap 4298502 GACGGATCGCAAAAA CAGAAAAGGCCACCC TAAT GGATGGCC-TTTCTG TTTATTTGATACCTG TERM 4508 4298495 - 4298527 + T 100 -11.4 -4.50627 | gap 1, opp_overlap 4298495 4298502, overlap 4298502 GACGGATCGCAAAAA CAGAAAAGGCCACCC TAAT GGATGGCC-TTTCTG TTTATTTGATACCTG TERM 4509 4298521 - 4298502 - T 100 -11.4 -4.98672 | opp_overlap 4298495 4298502, overlap 4298495 CGCAAAAACAGAAAA GGCCACCC TAAT GGATGGCC TTTCTGTTTATTTGA TERM 4510 4298502 - 4298521 + T 95 -9.2 -4.50993 | opp_overlap 4298502 4298495, overlap 4298495 CGCAAAAACAGAAAA GGCCACCC TAAT GGATGGCC TTTCTGTTTATTTGA TERM 4511 4299005 - 4298995 - T 74 -6.8 -4.27316 | opp_overlap 4298995 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4512 4300117 - 4300128 + T 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4513 4300164 - 4300190 + T 70 -9.4 -2.75844 | opp_overlap 4300140 4300142, overlap 4300163 4300166 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4514 4300624 - 4300642 + T 82 -10.3 -3.57798 | overlap 4300617 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG YPTS_3850 4304231 - 4304112 - | hypothetical protein TERM 4515 4304825 - 4304811 - g 70 -7.8 -3.87075 | opp_overlap 4304815, overlap 4304815 ACTATTGGTCATAAA GCCATG CTA CACGGC TGTACCATTGGTAAC YPTS_3851 4304535 - 4305077 + | hexapaptide repeat-containing transferase YPTS_3852 4305953 - 4305132 - | shikimate 5-dehydrogenase YPTS_3853 4306534 - 4305962 - | SUA5/yciO/yrdC domain-containing protein TERM 4516 4306037 - 4306020 - G 74 -9.1 -3.67792 | overlap 4306030 TCAGATGGATTCAAA CGGCCAC CAAC GTGACCG GATAACACCGGTAAT YPTS_3854 4307075 - 4306536 - | DNA topoisomerase type IA Zn finger domain-containing protein YPTS_3855 4307589 - 4307116 - | hypothetical protein YPTS_3856 4308682 - 4307561 - | DNA protecting protein DprA TERM 4517 4308007 - 4307985 - GH 72 -7.1 -3.91084 | gap 1, overlap 4307987 CGAGCGGTAATCAAA GA-GCCACTT TTTA AAGTGGCCTC AACGACTAACACAGC TERM 4518 4308004 - 4307987 - GH 78 -9.9 -3.54414 | overlap 4307985 AGCGGTAATCAAAGA GCCACTT TTTA AAGTGGC CTCAACGACTAACAC YPTS_3857 4308817 - 4309329 + | peptide deformylase TERM 4519 4309399 - 4309423 + G 91 -15 -3.17622 | overlap 4309403 GGAACTCCTGATTTT GCAGCGCGCC ATTTA GGCGCGTTGC TCTCTTCTCAACATA TERM 4520 4309403 - 4309419 + G 78 -10.8 -3.40191 | overlap 4309399 CTCCTGATTTTGCAG CGCGCC ATTTA GGCGCG TTGCTCTCTTCTCAA TERM 4521 4309702 - 4309730 + G 70 -9.5 -3.12351 | GGTTCGTTACTCCCA CGTTGGCGTGGTG CAG CACCGATCCAACG TTCAGTATGGGCGGG TERM 4522 4309833 - 4309817 - g 78 -8.1 -4.37886 | CTATGCTGCATAAAA TTGAATG TGC CATTCAA CCAGAAGATACCAGT YPTS_3858 4309354 - 4310301 + | methionyl-tRNA formyltransferase TERM 4523 4310369 - 4310384 + F 89 -6.8 -5.32944 | CTTCTCCCTTTATTT GCTGGC GTTT GTCAGC TTTTTTGGTTATGAA TERM 4524 4311647 - 4311627 - g 78 -5.3 -4.86731 | opp_overlap 4311622 GCCTGGTAAACAAAA CCTTCCACA TCC TGAGGACGG TGATGGTTTCTTCTA YPTS_3859 4310395 - 4311684 + | sun protein TERM 4525 4312735 - 4312715 - g 77 -3.9 -5.00884 | ATGGGTGCGAAAAAA GCGATGG TACTTAT CCAACGC AGTGCTTACGTCGAT YPTS_3860 4311740 - 4313116 + | TrkA domain-containing protein TERM 4526 4313491 - 4313505 + G 73 -3.6 -4.95547 | TTATGGTACATTTAT TCAAAG CAT TTTTGA TTTTGTTATTGTAGC YPTS_3861 4313264 - 4313668 + | large conductance mechanosensitive channel protein TERM 4527 4313826 - 4313781 - T 100 -17.1 -2.90615 | opp_overlap 4313779 4313818, overlap 4313784 ATTTCTTTTAAATCA GAAGGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCCTCC CAGTTACTACCTTTT TERM 4528 4313823 - 4313784 - T 100 -15.2 -3.60151 | opp_overlap 4313779 4313818, overlap 4313781 TCTTTTAAATCAGAA GGCCAGTAGTAAAAAATC TATT GATTGCTTACCACTGGCC TCCCAGTTACTACCT YPTS_3862 4313978 - 4313778 - | hypothetical protein YPTS_3863 4314491 - 4314066 - | MerR family transcriptional regulator TERM 4529 4314892 - 4314929 + r 100 -20.1 -3.62032 | opp_overlap 4314904, overlap 4314893 4314904 AAGCTGTATATGGTG GGCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGCG TTTACAGATTACTCT TERM 4530 4314893 - 4314928 + r 100 -23.6 -2.76737 | opp_overlap 4314904, overlap 4314892 4314904 AGCTGTATATGGTGG GCGTAAAAAAACCGGG CAAG CCCGGTTTTTTTACGC GTTTACAGATTACTC TERM 4531 4314904 - 4314917 + r 100 -9.5 -5.4477 | opp_overlap 4314904, overlap 4314893 4314892 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT TERM 4532 4314917 - 4314904 - R 100 -9.5 -5.40072 | opp_overlap 4314904 4314893 4314892 GTGGGCGTAAAAAAA CCGGG CAAG CCCGG TTTTTTTACGCGTTT YPTS_3864 4315327 - 4314938 - | ribosomal protein L17 TERM 4533 4315056 - 4315082 + g 75 -11.4 -2.73123 | opp_overlap 4315040 4315053 CGAGTGTAACCACCG GCGCGGCTCGCG AAA CGCGGGCCTAGC TCGTTAAACAGTTTT TERM 4534 4315278 - 4315250 - G 77 -10.4 -3.57246 | gap 1, overlap 4315248 4315268 ATGACGAACCAAAGA GCC-GGCCATGTT ACGG AACATAGCCTGGC GATGGCTGCTGTTAC YPTS_3865 4316357 - 4315368 - | DNA-directed RNA polymerase, alpha subunit TERM 4535 4315451 - 4315463 + g 75 -3.4 -5.01732 | CGAGCACGTCTTTAA TCTC AGTAA GAGA TTTTTTACCCAGGTT TERM 4536 4316398 - 4316380 - R 77 -10.4 -3.14132 | TCTCTTTGGTACTAA GCTTTACT TGG AGTAAAGC TCGACGATCAGGTGT YPTS_3866 4317003 - 4316383 - | ribosomal protein S4 TERM 4537 4317044 - 4317028 - R 82 -7.9 -4.42851 | opp_overlap 4317028 4317027 CCAACAAACCTAAAA GCAGCGT TAT ACGCGGC GCTTTTTCGGCGGAC YPTS_3867 4317423 - 4317034 - | ribosomal protein S11 YPTS_3868 4317796 - 4317440 - | ribosomal protein S13 TERM 4538 4317913 - 4317884 - R 100 -12.3 -4.61868 | gap 1 CAGTCACATACAAAA GATTG-GCTGGCTA ATC TAGCCAGCTCAACC CAACTTTGCAAGAAA YPTS_3869 4318060 - 4317944 - | ribosomal protein L36 YPTS_3870 4319425 - 4318094 - | preprotein translocase, SecY subunit TERM 4539 4318991 - 4318962 - G 78 -7.9 -4.45168 | overlap 4318986 GCGGTAAAATAGAAA GCAAAGCCTGG ATTGATTA CCAGACCTTGC ATCCCAGGCATATTC YPTS_3871 4319867 - 4319433 - | ribosomal protein L15 YPTS_3872 4320050 - 4319871 - | ribosomal protein L30 YPTS_3873 4320556 - 4320053 - | ribosomal protein S5 TERM 4540 4320350 - 4320370 + g 73 -4.6 -4.67353 | opp_overlap 4320348, overlap 4320348 AACGTTAATCATAGC GCGACGGG CTTTT TCCATCGC TTTTTGGATCGCTGC YPTS_3874 4320924 - 4320571 - | ribosomal protein L18 YPTS_3875 4321467 - 4320934 - | ribosomal protein L6 YPTS_3876 4321874 - 4321482 - | ribosomal protein S8 YPTS_3877 4322213 - 4321908 - | ribosomal protein S14 TERM 4541 4322171 - 4322192 + g 76 -8.7 -4.02021 | overlap 4322172 4322174 ATTTGTTAGCTAGTT TCACGCGAA CAAC TTCGCGTGC TTTCATTGATTGCTT TERM 4542 4322172 - 4322191 + g 81 -12.2 -3.00128 | overlap 4322171 4322174 TTTGTTAGCTAGTTT CACGCGAA CAAC TTCGCGTG CTTTCATTGATTGCT YPTS_3878 4322766 - 4322227 - | ribosomal protein L5 TERM 4543 4322604 - 4322622 + g 73 -7.4 -4.30987 | opp_overlap 4322603, overlap 4322589 TTGCTGCCAAGTCAG CTGCTGCA TTA TCCAGCAG TTTCTTGTCAGCGAT YPTS_3879 4323095 - 4322781 - | ribosomal protein L24 YPTS_3880 4323477 - 4323106 - | ribosomal protein L14 TERM 4544 4323608 - 4323634 + r 70 -8 -3.69069 | opp_overlap 4323608, overlap 4323611 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG TERM 4545 4323634 - 4323608 - R 100 -10.2 -5.24531 | opp_overlap 4323608 4323611 AGTGGGTAGAAAAAA TAAGCGGCCC ATTTTCA GAGCCGCTTA TTATGTTCGAGTTGG YPTS_3881 4323912 - 4323658 - | ribosomal protein S17 YPTS_3882 4324103 - 4323912 - | ribosomal protein L29 YPTS_3883 4324513 - 4324103 - | ribosomal protein L16 YPTS_3884 4325224 - 4324526 - | ribosomal protein S3 TERM 4546 4325078 - 4325110 + g 74 -10 -3.61654 | overlap 4325079 GCGAGAAACGGAAGC TTTCGCTAATTCCT TAGTC AGGAATTGGCGAAC TTTAAAGTCGCTGTC TERM 4547 4325079 - 4325109 + g 85 -13.5 -2.76671 | overlap 4325078 CGAGAAACGGAAGCT TTCGCTAATTCCT TAGTC AGGAATTGGCGAA CTTTAAAGTCGCTGT YPTS_3885 4325574 - 4325242 - | ribosomal protein L22 YPTS_3886 4325867 - 4325589 - | ribosomal protein S19 YPTS_3887 4326706 - 4325882 - | ribosomal protein L2 TERM 4548 4326741 - 4326761 + r 80 -9.7 -3.57462 | opp_overlap 4326744, overlap 4326744 CTCTGCGCCGCCGAT GAAGTCCAG ATT CTGGCCTTC TTTCAGGGTGACGTA YPTS_3888 4327025 - 4326723 - | ribosomal protein L25/L23 YPTS_3889 4327627 - 4327022 - | ribosomal protein L4/L1e TERM 4549 4327595 - 4327607 + g 77 -10.5 -3.54414 | opp_overlap 4327590, overlap 4327594 TTCGGAAACAGTCAG CGCGC CTG GCGCG TCTTTCATTACCAAT YPTS_3890 4328273 - 4327644 - | ribosomal protein L3 YPTS_3891 4328617 - 4328306 - | ribosomal protein S10 YPTS_3892 4329488 - 4329015 - | bacterioferritin YPTS_3893 4329761 - 4329567 - | BFD/(2Fe-2S)-binding domain-containing protein TERM 4550 4329850 - 4329865 + r 91 -10.4 -4.10953 | opp_overlap 4329850 TTTATCAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT TERM 4551 4329865 - 4329850 - R 100 -10.4 -5.5112 | opp_overlap 4329850 TTTATCAATAAAAAA GGGTGC CGAG GCACCC TTTGGTTTGATCAAT YPTS_3894 4331084 - 4329900 - | translation elongation factor Tu TERM 4552 4331100 - 4331133 + r 77 -10.3 -3.10579 | overlap 4331097 GACTATATTCCTTAC TCTTGTGCTCTCCCA CTAA TGAGAGAGCACTGGA TCATTGTTTTAAACC YPTS_3895 4333264 - 4331156 - | translation elongation factor G YPTS_3896 4333828 - 4333358 - | ribosomal protein S7 YPTS_3897 4334299 - 4333925 - | ribosomal protein S12 YPTS_3898 4334724 - 4334437 - | sulfur relay protein TusB/DsrH YPTS_3899 4335109 - 4334744 - | sulfur relay protein TusC/DsrF TERM 4553 4334926 - 4334937 + g 77 -3 -5.30686 | overlap 4334931 AAGTAGCAATATAGT TTCT GGCA AGAA TTTTTTCTGGCTGTT YPTS_3900 4335504 - 4335109 - | sulfur relay protein TusD/DsrE YPTS_3901 4336226 - 4335504 - | YheO domain-containing protein TERM 4554 4336449 - 4336426 - R 100 -9.6 -6.22802 | opp_overlap 4336426 GCGCACAAAAAAAAA CCGTCACGAC AATT ATCGTAACGG TTATGAGAAGAGTGT YPTS_3902 4337280 - 4336480 - | FKBP-type peptidyl-prolyl isomerase domain-containing protein TERM 4555 4336642 - 4336656 + g 80 -2.8 -5.41359 | opp_overlap 4336642, overlap 4336627 TGGCGGGATAACCAA GGTG ATTTTGC CACC TTTTTTGATTTGCTT YPTS_3903 4337595 - 4337813 + | SlyX family protein TERM 4556 4337998 - 4337966 - T 77 -10.7 -2.87931 | opp_overlap 4337973, overlap 4337973 GTGATCGCGTACAGA GTAAAAAGCCAGC GATGAAG GCTGGCTTTTTGC TGACGGGGCCAGATA TERM 4557 4337973 - 4337991 + T 81 -7.4 -4.72272 | opp_overlap 4337966 4337973 CGTACAGAGTAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG TERM 4558 4337991 - 4337973 - T 85 -7.4 -4.84527 | opp_overlap 4337973, overlap 4337966 CGTACAGAGTAAAAA GCCAGC GATGAAG GCTGGC TTTTTGCTGACGGGG YPTS_3904 4338601 - 4338014 - | peptidylprolyl isomerase FKBP-type TERM 4559 4338575 - 4338586 + g 74 -4.4 -4.85545 | CTGGTAAGCCAGGCT GACT ACCA AGTC TTTTGTTACTTTCAT YPTS_3905 4338917 - 4338696 - | hypothetical protein YPTS_3906 4340741 - 4338933 - | potassium efflux system protein YPTS_3907 4341293 - 4340745 - | NAD(P)H dehydrogenase (quinone) TERM 4560 4341874 - 4341858 - g 100 -6.5 -5.63103 | overlap 4341859 TGCCAATGAAAAAAA TGATGGC CAT GCCATCG CAACCGTGCACGGTA TERM 4561 4341873 - 4341859 - g 81 -10 -3.96777 | overlap 4341858 GCCAATGAAAAAAAT GATGGC CAT GCCATC GCAACCGTGCACGGT TERM 4562 4343228 - 4343216 - g 74 -9.1 -3.65199 | opp_overlap 4343223 4343224 AATTCCGCACTCAAA CGCAG CCA CTGCG TAAGCAGATTATGAC YPTS_3908 4341544 - 4343466 + | ABC transporter related TERM 4563 4343551 - 4343518 - f 73 -9.7 -3.04263 | opp_overlap 4343540 4343544, overlap 4343520 ATGGCATCGTGAATA TAGTCGTGCGAAT TGAGTTAG AGTCGCACGACTA GAGCGGCGTGATTTT YPTS_3909 4343601 - 4344590 + | glycosyl transferase family protein YPTS_3910 4344683 - 4345663 + | glycosyl transferase family protein YPTS_3911 4346524 - 4345676 - | taurine catabolism dioxygenase TauD/TfdA YPTS_3912 4347375 - 4346521 - | binding-protein-dependent transport systems inner membrane component TERM 4564 4346807 - 4346793 - G 80 -7 -4.64846 | overlap 4346795 CCACAAACCATAAAA CCTGCC AAC GGCTGG CACCTAATGCACGGG TERM 4565 4347192 - 4347177 - G 80 -9 -4.19258 | ATAGCTGATGCAAAA CCTGCT GTGG AGCAGG TAAAAATAACGGGCC YPTS_3913 4348139 - 4347372 - | ABC transporter related TERM 4566 4347810 - 4347830 + g 78 -9 -4.0274 | gap 1 CCGGTTTAGCATTTT CAG-GGCGG TTAC CCGCCGCTG TTCTTTACTCATCCC YPTS_3914 4349191 - 4348148 - | taurine ABC transporter, periplasmic binding protein TERM 4567 4349317 - 4349279 - R 83 -12.1 -2.74597 | opp_overlap 4349286, overlap 4349286 4349290 4349295 CCGAGAGAGAGAGCA GCATAAAGGAATAAA AGAATATTG TTTATTCCTTTATGC GATAACAGATGTACT YPTS_3915 4349996 - 4349394 - | lysine exporter protein LysE/YggA TERM 4568 4350285 - 4350309 + G 71 -5 -4.58283 | opp_overlap 4350274, overlap 4350274 4350287 AGAAGCCCCGAGTGG TGCTCTTCCA CGGTT TGGAAGGGAA TTTTTACAGCCCTTA YPTS_3916 4350098 - 4351078 + | alpha/beta hydrolase fold protein YPTS_3917 4351075 - 4351311 + | hypothetical protein TERM 4569 4351803 - 4351835 + G 74 -4 -4.84311 | gap 1, overlap 4351804 TCCCTGGCACCTTTA C-TCCTTGGGAGCCG CTAC CGGAACCCACGGATG TTTTATTCTATGAAG TERM 4570 4351804 - 4351833 + G 73 -7.7 -4.03793 | overlap 4351803 CCCTGGCACCTTTAC TCCTTGGGAGCCG CTAC CGGAACCCACGGA TGTTTTATTCTATGA TERM 4571 4352145 - 4352181 + G 73 -8.7 -3.90038 | overlap 4352137 CGTTAGACGAAAGTT TCGTTGTGATCCATTTC CGT GGTTTGGATCACATCGA TTTCCCTTATTTGCT YPTS_3918 4351460 - 4352329 + | phosphoribulokinase/uridine kinase YPTS_3919 4352938 - 4352507 - | hypothetical protein TERM 4572 4352873 - 4352843 - G 95 -8.3 -5.3167 | overlap 4352866 GAAAAACAAAGAAAA TGAGGCGACAACA AACAA TGATATCGCCCCA CAGGCAACCGATATT TERM 4573 4352998 - 4352975 - R 93 -8.9 -4.56775 | opp_overlap 4352975 4352996 4352997 ATTTTGGCCTAAAAA CCCATAACC AAACCG GGCTATGGG TGGTTCACCATTTAC YPTS_3920 4353417 - 4353010 - | OsmC family protein YPTS_3921 4353753 - 4354385 + | Crp/FNR family transcriptional regulator TERM 4574 4354399 - 4354429 + F 100 -14.1 -4.75063 | gap 1, opp_overlap 4354399 AATTCCCTCTAAAAA CCGGCGCTAA-GGC TGAA GCTATTAGCGCCGG TTTTTCCCGTTTTCT TERM 4575 4354429 - 4354399 - f 100 -11.9 -4.57341 | gap 1, opp_overlap 4354399 AATTCCCTCTAAAAA CCGGCGCTAA-GGC TGAA GCTATTAGCGCCGG TTTTTCCCGTTTTCT TERM 4576 4355059 - 4355047 - g 75 -5.5 -4.66833 | CTTGAACCCGAAAAA GCGAT ACC ACCGC TACTCGATAGACAAC TERM 4577 4356033 - 4356021 - g 73 -5.5 -4.56597 | opp_overlap 4356024 GTTGTTGCGTAAAAA TGCCC ATC AGGCA CTGGAGGCTTATCAG TERM 4578 4356308 - 4356274 - g 74 -10.9 -2.7682 | gap 1, overlap 4356273 CTGATCAGAGAGAAT CCATTGACTGA-GGTG GACT CACCATCAACCAATGG TCATCCACTCATGAG YPTS_3922 4354471 - 4356591 + | YccS/YhfK family integral membrane protein YPTS_3923 4356678 - 4356574 - | hypothetical protein TERM 4579 4356690 - 4356716 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4356679, overlap 4356685 4356691 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4580 4356691 - 4356717 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4356679, overlap 4356685 4356690 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPTS_3924 4358034 - 4356817 - | succinylornithine transaminase family protein TERM 4581 4358131 - 4358114 - R 76 -2.7 -5.30686 | AATATGCATAAAAAA TCATCCG CAAG CAAATGA TAAATGATGTCATGG YPTS_3925 4358742 - 4358167 - | glutamine amidotransferase of anthranilate synthase YPTS_3926 4360527 - 4358986 - | protein of unknown function DUF853 NPT hydrolase putative TERM 4582 4359467 - 4359508 + g 71 -6.4 -4.26903 | overlap 4359477 TGTTCAGCACTGAAT GCCGGATTAGGCCGCATC GTCTGA GCTGCGGCTTTAACCGCC TTTTGATCCCGTGGC YPTS_3927 4361422 - 4360853 - | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 4583 4361641 - 4361609 - H 81 -11.3 -2.8194 | opp_overlap 4361604, overlap 4361600 TAATGAGTCACCACA TCCCAGACTCCAGCA AGA TTCTGGAGTCTGGAT CACGATTCTCTTACT TERM 4584 4361731 - 4361744 + H 81 -5.3 -5.18371 | opp_overlap 4361731 CTAATCTGCTTCAAA TGAGA GCGC TCTCA TTTTGTTTTCTGCAA TERM 4585 4361813 - 4361849 + H 78 -8.8 -3.86524 | gap 1, opp_overlap 4361815 4361817, overlap 4361814 4361817 CGGAGACCGTACAGA GACAGGCTCACC-TGAT GAAA ATCATGGTGAGCCTGAA TTTATCCACAGATAT TERM 4586 4361814 - 4361848 + H 93 -12.3 -2.91593 | gap 1, opp_overlap 4361815 4361817, overlap 4361813 4361817 GGAGACCGTACAGAG ACAGGCTCACC-TGAT GAAA ATCATGGTGAGCCTGA ATTTATCCACAGATA TERM 4587 4361847 - 4361815 - H 100 -15.8 -3.00498 | gap 1, opp_overlap 4361814 4361813 4361817, overlap 4361817 GAGACCGTACAGAGA CAGGCTCACC-TGAT GAAA ATCATGGTGAGCCTG AATTTATCCACAGAT TERM 4588 4361845 - 4361817 - H 93 -12.6 -3.05498 | gap 1, opp_overlap 4361817 4361814 4361813, overlap 4361815 GACCGTACAGAGACA GGCTCACC-TGAT GAAA ATCATGGTGAGCC TGAATTTATCCACAG TERM 4589 4361817 - 4361845 + H 88 -12.6 -2.70354 | gap 1, opp_overlap 4361815 4361817, overlap 4361814 4361813 GACCGTACAGAGACA GGCTCACC-TGAT GAAA ATCATGGTGAGCC TGAATTTATCCACAG YPTS_3928 4361827 - 4361940 + | hypothetical protein YPTS_3929 4361937 - 4363250 + | glycoside hydrolase family protein TERM 4590 4363694 - 4363714 + G 76 -2.4 -5.18357 | overlap 4363695 ACGCTGGGGTTGGTG ACCACCTC ATACC GAGGGGGC TTTTTTGGTGCCTTA TERM 4591 4363823 - 4363808 - g 73 -7.6 -4.10179 | GATAATGCAGATAAA GAATGG TTAG CCATTC AGCGGCTGTATAACT YPTS_3930 4363499 - 4364485 + | LacI family transcription regulator TERM 4592 4364547 - 4364524 - T 100 -14.6 -3.16921 | opp_overlap 4364524 ATTAATTGTTATTAA CGTGGCAAGC CATG GCCTGCCACG TTCTGCTAGCGCATT TERM 4593 4364524 - 4364547 + T 100 -12.4 -3.40899 | opp_overlap 4364524 ATTAATTGTTATTAA CGTGGCAAGC CATG GCCTGCCACG TTCTGCTAGCGCATT YPTS_3931 4366615 - 4364570 - | TonB-dependent copper receptor TERM 4594 4366365 - 4366342 - G 72 -11 -2.68823 | opp_overlap 4366329, overlap 4366341 4366344 TGGTCCTCAGATAAT CAGTACCGTC ACTG GCCGGTACTG GCTGGCGGGGCACTT YPTS_3932 4367101 - 4368285 + | major facilitator transporter TERM 4595 4368300 - 4368328 + T 78 -10.2 -3.2827 | overlap 4368302 ATTTATCTGCGTTAC CGCCCTGCCGCC GCCAA GGTGGCAGGGTA TTGATGATTCACTAA TERM 4596 4368302 - 4368326 + T 100 -15 -3.20494 | overlap 4368300 TTATCTGCGTTACCG CCCTGCCGCC GCCAA GGTGGCAGGG TATTGATGATTCACT YPTS_3933 4369668 - 4368370 - | amidohydrolase 3 TERM 4597 4369112 - 4369097 - G 90 -10.4 -4.35524 | CGGGTAAATTCAAAA TGGGGG ATCG CCCCCA CCGCATCCGCACCCA TERM 4598 4369496 - 4369483 - G 75 -8.1 -4.15222 | ATGCGGCTCAATAAA TGGCG GGAG CGCCA AACCGCCCTGTGCAT YPTS_3934 4369843 - 4369956 + | hypothetical protein TERM 4599 4370021 - 4370006 - g 95 -7.6 -5.50723 | TGAGCAAAATAAAAA TTGCCA TCAT TGGCAA CGGCATGGTCGGCCA TERM 4600 4371228 - 4371217 - g 73 -7.2 -4.2123 | opp_overlap 4371216, overlap 4371218 CATGCAGGTAATAAA CCCG CCAT CGGG GTGGATTCCCTGCCA TERM 4601 4372138 - 4372126 - g 79 -10.5 -3.73072 | opp_overlap 4372125 4372126 AACGGCGGCATGAAA CCGCG TCA CGCGG ATTTACTGGCAGCCG TERM 4602 4372126 - 4372138 + G 71 -10.5 -2.83403 | opp_overlap 4372126, overlap 4372125 AACGGCGGCATGAAA CCGCG TCA CGCGG ATTTACTGGCAGCCG YPTS_3935 4369990 - 4372536 + | nitrite reductase (NAD(P)H), large subunit YPTS_3936 4372533 - 4372859 + | nitrite reductase (NAD(P)H), small subunit YPTS_3937 4373026 - 4373832 + | formate/nitrite transporter YPTS_3938 4373895 - 4375316 + | uroporphyrin-III C-methyltransferase TERM 4603 4375408 - 4375431 + T 76 -11 -2.53641 | opp_overlap 4375409, overlap 4375407 GGTTAATGCTGATTA ATGAGGGGGA AATT TCCCCCTCAC ATTACTGATGCGTTG TERM 4604 4375430 - 4375409 - T 100 -14.5 -3.16742 | opp_overlap 4375408 4375407 GTTAATGCTGATTAA TGAGGGGGA AATT TCCCCCTCA CATTACTGATGCGTT YPTS_3939 4376493 - 4375453 - | tryptophanyl-tRNA synthetase YPTS_3940 4377193 - 4376495 - | phosphoglycolate phosphatase TERM 4605 4376980 - 4376954 - G 70 -8 -3.79882 | overlap 4376977 ATAATAGTGATCAAA CAGCTCGCGG GTCTGTG CCACAAGCTG AGCATTATGTTCACG YPTS_3941 4377863 - 4377186 - | ribulose-phosphate 3-epimerase YPTS_3942 4378981 - 4378166 - | DNA adenine methylase TERM 4606 4378519 - 4378507 - G 87 -5.5 -5.38054 | opp_overlap 4378507 4378508, overlap 4378501 4378508 GCTCACAAACAAAAA CCGCA TTT TGCGA TTTTTCAGCAAACCA TERM 4607 4378628 - 4378605 - G 74 -9 -3.69094 | AATTCACCACTCAAA TTATAACGAC ACAG GCCGTTATAA CAGTGGCGATTGAGA TERM 4608 4378899 - 4378937 + g 75 -10.2 -3.34398 | opp_overlap 4378896, overlap 4378896 4378900 TCTATCAAACAATCT CCCGCTGGAAGATGGCGT CGT ATGTCATCAACCAGCGGA TATTTCCCACCAGCC TERM 4609 4378900 - 4378936 + g 84 -13.7 -2.60496 | opp_overlap 4378896, overlap 4378899 4378896 CTATCAAACAATCTC CCGCTGGAAGATGGCGT CGT ATGTCATCAACCAGCGG ATATTTCCCACCAGC YPTS_3943 4380054 - 4379065 - | sporulation domain-containing protein YPTS_3944 4381396 - 4380308 - | 3-dehydroquinate synthase YPTS_3945 4381974 - 4381453 - | shikimate kinase YPTS_3946 4383825 - 4382323 - | type IV pilus secretin PilQ TERM 4610 4382484 - 4382500 + g 71 -8.7 -3.62418 | AAATCCCGCCCAGCA CGATGGT TTC GCCATCG TTTACAGTAACTTGT YPTS_3947 4384287 - 4383874 - | membrane protein YPTS_3948 4384879 - 4384253 - | membrane protein YPTS_3949 4385432 - 4384827 - | fimbrial assembly family protein YPTS_3950 4386328 - 4385432 - | hypothetical protein TERM 4611 4385848 - 4385838 - G 73 -8.2 -3.83323 | GCCATATAACGTAAA GCGC ATG GCGC AATATCAATCACTTG TERM 4612 4385892 - 4385874 - G 73 -8.8 -3.96327 | ACTTGTGAGGATAAA CCCGCCTG TTC CAAGCAGG CTTGCCATTGCTGCA TERM 4613 4387652 - 4387639 - g 70 -2.3 -5.00616 | overlap 4387640 4387641 4387643 CCGGTCCCCAAAAAA GCGAC TGAT GTCGT TCAGCCTGGTCAGCA YPTS_3951 4386448 - 4389003 + | 1A family penicillin-binding protein TERM 4614 4389072 - 4389024 - T 100 -13.6 -5.00616 | gap 1, opp_overlap 4389036, overlap 4389036 GCCTGGTGTAAAAAA CTTATCTAAAAAGCCAGATGATC TGAT GATCATCTGGCTTTTTT-ATAAA TTACTCGTATAAAAA TERM 4615 4389061 - 4389036 - T 100 -16.3 -4.69027 | opp_overlap 4389036, overlap 4389024 AAACTTATCTAAAAA GCCAGATGATC TGAT GATCATCTGGC TTTTTTATAAATTAC TERM 4616 4389036 - 4389061 + T 100 -16.3 -5.31456 | opp_overlap 4389024 4389036 AAACTTATCTAAAAA GCCAGATGATC TGAT GATCATCTGGC TTTTTTATAAATTAC YPTS_3952 4389685 - 4389140 - | NUDIX hydrolase TERM 4617 4389381 - 4389371 - G 73 -8.2 -3.89617 | AGCGAGAAAGTCAAA GCGC TCA GCGC CATATCCAACTTCTT YPTS_3953 4390238 - 4390044 - | hypothetical protein TERM 4618 4391070 - 4391057 - g 71 -3.8 -4.68593 | TTCAGTATCGAAAAA TGCG TCTATT CGCA AAGAAGATAGCGAAC TERM 4619 4392252 - 4392265 + G 75 -3.7 -5.14563 | opp_overlap 4392250, overlap 4392250 GAAGCGTTGAATAGC CCACC TCCG GGCGG TTTTTTGATCACCAG YPTS_3954 4390518 - 4392665 + | intracellular growth attenuator IgaA YPTS_3955 4392809 - 4393489 + | HAD family hydrolase YPTS_3956 4393518 - 4393925 + | RNA-binding S4 domain-containing protein YPTS_3957 4394088 - 4394969 + | Hsp33 protein TERM 4620 4394983 - 4395010 + F 100 -13.4 -3.82097 | AATCCTCGTAATGCT TAGCCGGGTACC TATT GGTGCCCGGCCA TTTCCTCCGTTTCAC YPTS_3958 4395166 - 4396785 + | phosphoenolpyruvate carboxykinase (ATP) TERM 4621 4396819 - 4396842 + T 100 -6.7 -5.61913 | AGTTTAGCGTTACAG GGGGCAC TTTCAGAATT GTGCCCC TTTTTTCTATTTATT TERM 4622 4396938 - 4396924 - T 84 -11.4 -3.14564 | opp_overlap 4396921 TTATCCCTCCATCAA GCCACC GCT GGTGGC TTCAGACTGCTGACA TERM 4623 4397028 - 4397002 - T 78 -8.7 -3.82218 | gap 1, opp_overlap 4397011, overlap 4397005 4397018 AGGCAGAGGAGTAAA GCATCCGCGCCA AGGA TGGCGCGGCT-C GAGCCTACATGGATG TERM 4624 4397026 - 4397005 - T 83 -11.5 -2.99207 | opp_overlap 4397011, overlap 4397002 4397018 CAGAGGAGTAAAGCA TCCGCGCCA AGGA TGGCGCGGC TCGAGCCTACATGGA TERM 4625 4397127 - 4397102 - T 100 -14.1 -3.62046 | gap 1, opp_overlap 4397105, overlap 4397103 GCACTTTGTCAATAA CCTCAAGCCACC GCT GGTGGCTTG-GG CTTCACATCCAATGG TERM 4626 4397127 - 4397103 - T 95 -14.3 -2.77013 | opp_overlap 4397105, overlap 4397102 CACTTTGTCAATAAC CTCAAGCCACC GCT GGTGGCTTGGG CTTCACATCCAATGG YPTS_3959 4398456 - 4397104 - | integral membrane sensor signal transduction histidine kinase YPTS_3960 4399172 - 4398453 - | two component transcriptional regulator YPTS_3961 4399823 - 4399308 - | transcription elongation factor GreB TERM 4627 4400508 - 4400490 - g 76 -11.8 -2.85351 | GCGGGTTAGATGATA TCCAACTG CGT CAGTTGGA AAGCCGTCTGGGGTA TERM 4628 4400608 - 4400585 - g 75 -5.8 -4.49337 | overlap 4400589 GAAGATCAAGGAAAA CTCACCGACC AGCT GGCCGGGGCG ATCAACGCCACCCTA YPTS_3962 4400342 - 4402717 + | RNA-binding S1 domain-containing protein TERM 4629 4402737 - 4402792 + F 100 -31 -2.90813 | opp_overlap 4402742, overlap 4402742 TGACAAGGACGGCCA TTAAACTGCCCCCCTCATTATTAGAT TGAT ATCCAATAATGAGGGGGGCAGTTTAA TAATTTAACAAAATA TERM 4630 4402787 - 4402742 - f 100 -28.7 -3.73953 | opp_overlap 4402737 4402742 AGGACGGCCATTAAA CTGCCCCCCTCATTATTAGAT TGAT ATCCAATAATGAGGGGGGCAG TTTAATAATTTAACA TERM 4631 4402742 - 4402787 + F 100 -26.5 -3.8901 | opp_overlap 4402742, overlap 4402737 AGGACGGCCATTAAA CTGCCCCCCTCATTATTAGAT TGAT ATCCAATAATGAGGGGGGCAG TTTAATAATTTAACA YPTS_3963 4403241 - 4403468 + | FeoA family protein TERM 4632 4403992 - 4403980 - g 80 -4.7 -5.11613 | opp_overlap 4403980 ACATTATCTAAAAAA CTGGG TTG CCCGG TCATTCCATTGGTAT YPTS_3964 4403560 - 4405875 + | ferrous iron transport protein B TERM 4633 4405857 - 4405871 + F 74 -10 -3.15579 | opp_overlap 4405856 TGGCTGCCGAAGTAG TGGCAG CAA CTGCCA TTGATCACCCATTAG YPTS_3965 4405911 - 4406168 + | hypothetical protein TERM 4634 4406190 - 4406169 - T 100 -14.5 -3.78034 | opp_overlap 4406166 4406163 4406189 CACGCACACCAATAA GAGATGCCC ATAT GGGCATCTC AACATGTTGATTCCG YPTS_3966 4406589 - 4406320 - | hypothetical protein YPTS_3967 4407535 - 4406759 - | bioH protein TERM 4635 4408151 - 4408113 - g 100 -17.5 -2.90763 | gap 1, overlap 4408131 GCTACAGCGTATACA CGCTACGCCGCCG-CAAC AGCA GCTGACGGCGGCACAGCG GCGAAAGAACGTGCG YPTS_3968 4407622 - 4408323 + | hypothetical protein YPTS_3969 4408383 - 4408958 + | IscR-regulated protein YhgI YPTS_3970 4411239 - 4409143 - | 4-alpha-glucanotransferase YPTS_3971 4413657 - 4411252 - | glycogen/starch/alpha-glucan phosphorylase TERM 4636 4416322 - 4416304 - g 72 -11 -2.53263 | TCGAGGGCGAAGCCA TGGCGCAA CAA CTGCGCCA ACTGATCCAACTCAA TERM 4637 4416419 - 4416429 + G 77 -4 -5.14163 | overlap 4416421 GCATAAATTCGCGCA TTTC GAC GAAA TTTTTGTTGATAAAT YPTS_3972 4413975 - 4416686 + | ATP-dependent transcription regulator LuxR YPTS_3973 4417061 - 4417390 + | rhodanese domain-containing protein TERM 4638 4417922 - 4417936 + G 70 -10 -3.13566 | opp_overlap 4417914, overlap 4417920 AAAAACGGCTTGGCA CCAGCA AAT TGCTGG TATTAACTATCGTCT YPTS_3974 4417408 - 4418244 + | rhomboid family protein TERM 4639 4418524 - 4418512 - g 75 -6.2 -4.63218 | overlap 4418513 GTGGTCGGAAGAAAA GGCG CGGAT CGCC CAACGCGTTGCTAGC YPTS_3975 4418279 - 4419037 + | DeoR family transcriptional regulator YPTS_3976 4419300 - 4419133 - | hypothetical protein TERM 4640 4419924 - 4419948 + r 76 -7.9 -4.22524 | GAAACACGGTCACTA CGCGAGAAAAA CAA TTTTATTCGCG TTTCATTTTAACTAT YPTS_3977 4420404 - 4419940 - | hypothetical protein YPTS_3978 4421009 - 4420713 - | hypothetical protein TERM 4641 4422199 - 4422180 - g 73 -8.6 -3.90291 | gap 1 ATCCGCCTAATTAAA GGCAGCCAC ATT GTGG-TGCC CCGGGTTCATAACCA TERM 4642 4422652 - 4422637 - g 71 -6.8 -4.2558 | gap 1 CAGCGTGGACTAAAA CCGGTGC CTT GC-CCGG TGGGGATATCGGCGG TERM 4643 4422992 - 4422978 - g 71 -4.2 -4.70659 | opp_overlap 4422981 GCGCACACTGAAAAA CAACAG GCG CTGCCG CTGGTTTCTTAATAG YPTS_3979 4421490 - 4423004 + | FAD dependent oxidoreductase TERM 4644 4423024 - 4423037 + T 70 -3.9 -4.84529 | opp_overlap 4423012, overlap 4423012 AAAGTTTAACATTGT TTAAC TTTC GTTAA TTTTTGCCTTTCTGG TERM 4645 4423093 - 4423121 + T 100 -9.6 -5.0538 | gap 1, opp_overlap 4423093 CAAGAAATTTAAAAA CCCTCTTCATCGG ATAA CCGC-GAAGAGGG TTTTTTACGGTGGCA TERM 4646 4423121 - 4423093 - T 100 -11.8 -4.86939 | gap 1, opp_overlap 4423093 CAAGAAATTTAAAAA CCCTCTTCATCGG ATAA CCG-CGAAGAGGG TTTTTTACGGTGGCA YPTS_3980 4425685 - 4423166 - | glycogen/starch/alpha-glucan phosphorylase TERM 4647 4423843 - 4423833 - G 73 -8.2 -3.84406 | opp_overlap 4423833 TTGGCATTATAATAA GCCG AGG CGGC TTTACCGGCAAAAAT TERM 4648 4424195 - 4424220 + g 100 -11.1 -4.63218 | opp_overlap 4424198, overlap 4424173 GTTGGCTAACCCCAA CCAGCGCCGTG GTGT CACGCCGTTGG TTTTATTGCAGAAAC YPTS_3981 4427180 - 4425750 - | glycogen/starch synthase, ADP-glucose type YPTS_3982 4428677 - 4427391 - | glucose-1-phosphate adenylyltransferase YPTS_3983 4430675 - 4428687 - | glycogen debranching enzyme GlgX TERM 4649 4428787 - 4428771 - G 79 -10.1 -3.63627 | GTCTGACACCCCAAA GGGAGGA ATC CCCTCCC ATTCCCCTTCAGGTA YPTS_3984 4432860 - 4430677 - | 1,4-alpha-glucan branching enzyme TERM 4650 4433440 - 4433456 + G 70 -2.1 -4.87786 | GGTTATTGCCTATCT GCTGAGT AAA ACACCGC TTTTTATCCCCTTGA TERM 4651 4434646 - 4434626 - g 73 -5.3 -4.4874 | opp_overlap 4434626 CGTAAAAACCTAAAA CGCAGCCAC GAT GTGGTCACG TTAAGTGATGAGATT YPTS_3985 4433366 - 4435063 + | signal transduction histidine kinase, LytS TERM 4652 4435104 - 4435141 + T 73 -8.6 -3.71848 | opp_overlap 4435106, overlap 4435106 AGAAAACTCTATAAA AAGTAATGCCAGAG TATAACCCAC CTCTGGCATTACTA TTATTCCTGACACAA TERM 4653 4435106 - 4435139 + T 83 -11.2 -3.44284 | opp_overlap 4435106, overlap 4435104 AAAACTCTATAAAAA GTAATGCCAGAG TATAACCCAC CTCTGGCATTAC TATTATTCCTGACAC TERM 4654 4435139 - 4435106 - T 100 -11.2 -4.90296 | opp_overlap 4435104 4435106 AAAACTCTATAAAAA GTAATGCCAGAG TATAACCCAC CTCTGGCATTAC TATTATTCCTGACAC YPTS_3986 4447206 - 4435258 - | hypothetical protein TERM 4655 4443992 - 4443975 - G 71 -10.5 -2.78505 | overlap 4443972 CAGAACTGAAGACCA CGGCCGC ACCG GCGACCG CATTGCCCTCGCTAT TERM 4656 4446156 - 4446142 - G 73 -7.8 -4.0031 | ATCCTTACCAAATAA GGCGAC TTC ATCGCC ACGGTATTTTTCATA TERM 4657 4447936 - 4447895 - R 87 -5 -5.45726 | gap 2, opp_overlap 4447901 4447903, overlap 4447903 TATATTCTAAAAAAA TCCT-AAA-ATTATTTTTAA CATC TTAAAAATAATATTTTAGGA TTAATGCCCGAAAAT TERM 4658 4447926 - 4447903 - R 74 -7 -4.35095 | opp_overlap 4447903 4447901, overlap 4447895 AAAAAAATCCTAAAA TTATTTTTAA CATC TTAAAAATAA TATTTTAGGATTAAT TERM 4659 4448454 - 4448435 - R 100 -6.4 -5.63645 | TTAAAATATAAAAAA CCCTAACC ATAA GATCAGGG TGCTTTGTTGTTCCT YPTS_3987 4449433 - 4449050 - | hypothetical protein TERM 4660 4449294 - 4449284 - G 77 -8.2 -4.18488 | ACTGAGTCCAAGAAA CGCG TTA CGCG GACATCCTTTTTCTC YPTS_3988 4449928 - 4449641 - | hypothetical protein YPTS_3989 4450243 - 4449935 - | hypothetical protein TERM 4661 4450814 - 4450794 - R 80 -2.7 -5.44119 | GTTACTCTAAAAAAA TTAATTTAC ATT ATAAATCAA TTTGTTAAATCCATT TERM 4662 4450919 - 4450936 + r 80 -10.5 -3.52113 | opp_overlap 4450919, overlap 4450913 CATACGATAAACAAA GCCCGCT CACT GGCGGGC TTCTGGGTTTTCGAC TERM 4663 4450936 - 4450919 - R 100 -9.8 -4.60949 | opp_overlap 4450919 4450913 CATACGATAAACAAA GCCCGC TCACTG GCGGGC TTCTGGGTTTTCGAC YPTS_3990 4452091 - 4450988 - | aspartate-semialdehyde dehydrogenase TERM 4664 4452466 - 4452482 + G 71 -2.9 -4.93968 | overlap 4452468 TGACTGAGATGATTG CGGCAAC TGT GTTGCTA TTTTTAATTATGGAT TERM 4665 4452468 - 4452480 + G 73 -7.7 -4.08682 | overlap 4452466 ACTGAGATGATTGCG GCAAC TGT GTTGC TATTTTTAATTATGG YPTS_3991 4452450 - 4453043 + | multiple antibiotic resistance (MarC)-related protein TERM 4666 4453129 - 4453115 - T 80 -2.8 -5.47399 | opp_overlap 4453115 TCAACGTCAAAAAAA CCAATT CAA AATGGG TCTTTGACTGCTGAC TERM 4667 4453206 - 4453219 + T 79 -8.1 -4.3534 | opp_overlap 4453200 TGTCAATAACCTCAA GCCTC TTCT GAGGC TTTTAATAATTAGAC YPTS_3992 4453618 - 4453229 - | hypothetical protein YPTS_3993 4454117 - 4453725 - | hypothetical protein YPTS_3994 4455361 - 4454114 - | hypothetical protein YPTS_3995 4456046 - 4455543 - | carbohydrate kinase YPTS_3996 4456263 - 4457579 + | gluconate transporter YPTS_3997 4458609 - 4457671 - | LacI family transcription regulator TERM 4668 4458717 - 4458740 + r 100 -8.2 -4.87291 | gap 1, opp_overlap 4458712 4458717 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA TERM 4669 4458740 - 4458717 - R 82 -6 -4.93877 | gap 1, opp_overlap 4458717, overlap 4458712 TTCTAGCAAAGAAAA GGGTATAGCGC GAT GTGC-ATACCC TTTTTAGTTAACGTA YPTS_3998 4459490 - 4458795 - | pirin domain-containing protein YPTS_3999 4459831 - 4459619 - | hypothetical protein TERM 4670 4459731 - 4459715 - G 100 -9.4 -6.17292 | AAAGGCAAAAAAAAA GCCAGC ACCCG GCTGGC TAAGTAAACACTGGA YPTS_4000 4460254 - 4460991 + | two component transcriptional regulator YPTS_4001 4462073 - 4461066 - | ribokinase-like domain-containing protein TERM 4671 4461598 - 4461581 - G 81 -12.7 -2.62933 | overlap 4461569 CAAGCTGCGACATCA GCGCCAG TAGT CTGGCGC TACGAGTACCGTACT YPTS_4002 4462943 - 4462083 - | ketose-bisphosphate aldolase YPTS_4003 4463652 - 4462969 - | hypothetical protein YPTS_4004 4464671 - 4463727 - | periplasmic binding protein/LacI transcriptional regulator YPTS_4005 4465694 - 4464702 - | inner-membrane translocator TERM 4672 4465652 - 4465627 - G 76 -9.9 -3.72695 | opp_overlap 4465646, overlap 4465638 ACGGTTTGCAGTAAA TCGCTAAAAAA CGCT TTTTTCAGCGA GGCAGATTTTGCCAC TERM 4673 4465651 - 4465638 - G 77 -3.8 -5.07107 | opp_overlap 4465646, overlap 4465627 TAAATCGCTAAAAAA CGCT TTTTTC AGCG AGGCAGATTTTGCCA YPTS_4006 4467210 - 4465687 - | ABC transporter related YPTS_4007 4467399 - 4469954 + | multi-sensor hybrid histidine kinase YPTS_4008 4470404 - 4470502 + | hypothetical protein TERM 4674 4470576 - 4470544 - T 74 -9.4 -3.28405 | opp_overlap 4470547, overlap 4470547 ACAAGAGATGAGTAA TAATATGGACAGTA GGAAT CACTATCCATATTA TAAGTATAAAATTAA YPTS_4009 4472795 - 4470588 - | hypothetical protein TERM 4675 4470776 - 4470788 + g 100 -5.5 -5.53991 | AAAAACTGTTGAATC CATGG ACA CCGTG TTTTTTTGCTAAGTC TERM 4676 4470812 - 4470823 + g 72 -5.8 -4.32046 | CTAAGTCATCTAGTG CCCT GTAG AGGG TTTCATTTTTACAGG YPTS_4010 4474338 - 4473031 - | hypothetical protein TERM 4677 4473745 - 4473757 + g 73 -5.5 -4.62054 | TAAAAGATAGCCACT TGCGT TAC GCGCA TTTTGATTTACTTCA TERM 4678 4474604 - 4474639 + r 93 -12.2 -3.64703 | opp_overlap 4474604 ACATTCTGTACCAAA CCCCTTATAATATT CCCGAAAA AATATTATAAGGGG TTTGAATAACAAAGA TERM 4679 4474639 - 4474604 - R 100 -13.6 -3.73402 | opp_overlap 4474604 ACATTCTGTACCAAA CCCCTTATAATATTCC CGAA AAAATATTATAAGGGG TTTGAATAACAAAGA YPTS_4011 4475149 - 4474769 - | hypothetical protein YPTS_4012 4475767 - 4475213 - | hypothetical protein TERM 4680 4476921 - 4476902 - g 71 -5 -4.61231 | overlap 4476904 GGATATTTTCAAAAA TAGCAGTA CAAG CACTGCCA CTCAACTAAGAAACA YPTS_4013 4476084 - 4477124 + | hypothetical protein TERM 4681 4477156 - 4477178 + G 80 -7 -4.64861 | overlap 4477157 TGAGCACTTAACTGC ATGCGGATAT GAA GTATCCGCAG TTTCTTTTGGCCCAA TERM 4682 4477157 - 4477177 + G 75 -10.5 -3.38435 | overlap 4477156 GAGCACTTAACTGCA TGCGGATAT GAA GTATCCGCA GTTTCTTTTGGCCCA TERM 4683 4478095 - 4478083 - g 71 -4.9 -4.56607 | TCAGGAATTACAAAA CAAAA AAG TTTTG CTAATTGGTTGTGGT YPTS_4014 4477121 - 4478860 + | UBA/THIF-type NAD/FAD binding protein YPTS_4015 4478850 - 4479344 + | hypothetical protein TERM 4684 4479447 - 4479437 - g 95 -4 -5.7946 | TGCTTAATAAAAAAA CATA TAA TATG GGATGATGTCGGATT TERM 4685 4479528 - 4479512 - g 73 -2.3 -5.08824 | overlap 4479496 CTTTTATTGAAAAAA GATGA AGTTTTA TCATC TATGCGTTTTAACCT YPTS_4016 4479341 - 4480930 + | hypothetical protein YPTS_4017 4480986 - 4481486 + | hypothetical protein YPTS_4018 4482531 - 4481533 - | hypothetical protein TERM 4686 4481814 - 4481830 + g 75 -3.7 -5.14985 | opp_overlap 4481815, overlap 4481815 TTAATTCATGGTAAC ATCCATA ACT TATGGAG TTTTTATGTCTTTCG YPTS_4019 4483951 - 4482542 - | hypothetical protein YPTS_4020 4485393 - 4483969 - | AAA ATPase YPTS_4021 4487555 - 4485390 - | hypothetical protein TERM 4687 4486696 - 4486681 - G 71 -6.8 -4.19746 | opp_overlap 4486681 TCTAGCTCAAAACAA CTCCCG GGTA CGAGAG TATGGTCCGTTGCTG TERM 4688 4487031 - 4487041 + g 100 -4.6 -6.06723 | TTGGTAAATTCGACC GGGG AAT CCTC TTTTTTTTTCACCAG YPTS_4022 4488366 - 4487545 - | TnsA endonuclease YPTS_4023 4489852 - 4488464 - | hypothetical protein TERM 4689 4489365 - 4489377 + g 75 -3.3 -5.14563 | opp_overlap 4489366, overlap 4489366 GAATCATCACAAAAA AGCTG CCC CAGCG TTTTTTCATGCCAGG TERM 4690 4489376 - 4489366 - G 91 -6.8 -5.33785 | opp_overlap 4489365 4489366 AATCATCACAAAAAA GCTG CCC CAGC GTTTTTTCATGCCAG YPTS_4024 4489878 - 4491473 + | phosphate transporter TERM 4691 4491569 - 4491589 + T 100 -10.4 -5.43514 | opp_overlap 4491569 GATGAGCAATAAAAA GGCGGCCT AAATC AGGTCGCC TTTTTTAATTCTTTT TERM 4692 4491589 - 4491569 - T 100 -8.9 -5.15167 | opp_overlap 4491569 GATGAGCAATAAAAA GGCGGCCTA AAT CAGGTCGCC TTTTTTAATTCTTTT YPTS_4025 4491955 - 4491620 - | universal stress protein B YPTS_4026 4492680 - 4493126 + | UspA domain-containing protein TERM 4693 4493154 - 4493174 + F 100 -11.8 -4.91109 | opp_overlap 4493154 TTAGGTAACGCTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4694 4493174 - 4493154 - f 78 -9.6 -3.6715 | opp_overlap 4493154 TTAGGTAACGCTAAA CGCTCGCC TCTCC GGCGGGCG TTTTTGTGATAGACG TERM 4695 4493214 - 4493232 + F 76 -2.5 -5.252 | gap 1, overlap 4493218 CCCTCCTCGTTACCC TCAATCTG AATC CAGAT-GA TTTTTTGTCAAAATC TERM 4696 4493939 - 4493927 - g 73 -4.9 -4.77036 | TGGCATGATGAAAAA GTTAT CCA ATAAC ACCGCTTGCGTCTTT YPTS_4027 4493373 - 4494716 + | Glu/Leu/Phe/Val dehydrogenase YPTS_4028 4494963 - 4496297 + | peptidase M10 serralysin TERM 4697 4496371 - 4496358 - T 70 -9.5 -2.83403 | overlap 4496357 TTCGGGTGAGCAAAT GCCGC TAAC GCGGC GGCGTCACCGATGAA YPTS_4029 4497132 - 4496362 - | hypothetical protein TERM 4698 4497079 - 4497096 + g 88 -14.1 -2.74012 | opp_overlap 4497079 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA TERM 4699 4497096 - 4497079 - G 95 -14.1 -3.7319 | opp_overlap 4497079 AGCCAGAATAGATAA GGCGCCG GGAT CGGCGCC TGCTTCAGATAATAA YPTS_4030 4499178 - 4497136 - | peptidase M3A and M3B thimet/oligopeptidase F TERM 4700 4500028 - 4500018 - g 73 -5.4 -4.58773 | CGTATGAAATGAAAA CTGA TTA TCAG GATGTGGTGAAAGGT YPTS_4031 4499507 - 4500349 + | hypothetical protein TERM 4701 4501237 - 4501227 - g 73 -4.6 -4.7254 | overlap 4501213 4501228 4501229 AGCGGTTATCAAAAA CGCC GAT GGCA GCCTGACGCTGCAAT TERM 4702 4501463 - 4501475 + G 82 -10.5 -3.86524 | overlap 4501474 CCCCGGTTGCCGTTG CGGCG GGC CGCCG TTTGTCCGAACGTCT YPTS_4032 4500517 - 4501869 + | glutathione-disulfide reductase TERM 4703 4501879 - 4501916 + F 95 -11.3 -3.89346 | gap 1, opp_overlap 4501870, overlap 4501881 AGATGATTTCGTTAC TATGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCATG TTTCTGAAATAAACA TERM 4704 4501881 - 4501914 + F 89 -11.7 -3.53733 | gap 1, opp_overlap 4501870, overlap 4501879 ATGATTTCGTTACTA TGGCCCGAACAGGCAG AGA CT-CCTGCACGGGCCA TGTTTCTGAAATAAA TERM 4705 4502009 - 4502045 + F 72 -9.5 -3.1552 | opp_overlap 4502014, overlap 4501994 4502014 4502041 GCCTAGCTTTTATCT TAATAGCCTGGCTTTTA TCT TAATAGCCTGGCTTTTA TCTTAATAGATAGAA TERM 4706 4502014 - 4502040 + F 100 -9.4 -4.70583 | opp_overlap 4502014, overlap 4501994 4502009 GCTTTTATCTTAATA GCCTGGCTTTTA TCT TAATAGCCTGGC TTTTATCTTAATAGA TERM 4707 4502040 - 4502014 - f 71 -9.4 -3.05844 | opp_overlap 4501994 4502014 4502009 GCTTTTATCTTAATA GCCTGGCTTTTA TCT TAATAGCCTGGC TTTTATCTTAATAGA TERM 4708 4502828 - 4502843 + G 72 -6 -4.36262 | opp_overlap 4502822, overlap 4502827 TGCGCAAATTGTATG CGCTGC TACA GCCGCG TTTTAGTCTGAATAT YPTS_4033 4502140 - 4503267 + | transcriptional regulator, CdaR YPTS_4034 4503445 - 4504713 + | gluconate transporter TERM 4709 4505395 - 4505375 - g 74 -9.7 -3.46602 | opp_overlap 4505393 GGGGCGACACCAGAA CGCGTGCAA CAA TTGGACGCG GCGTTGCAGCATTAT YPTS_4035 4504724 - 4505860 + | glycerate kinase TERM 4710 4505996 - 4505965 - T 70 -7.2 -3.74872 | opp_overlap 4505963 4505992, overlap 4505967 AGGGACTTTATCAAA TACCGACGGTCAGA TATC TCTGGCCGTTGGGA CATCCTATTTTCCAC TERM 4711 4505994 - 4505967 - T 78 -9.8 -3.4582 | opp_overlap 4505963 4505992, overlap 4505965 GGACTTTATCAAATA CCGACGGTCAGA TATC TCTGGCCGTTGG GACATCCTATTTTCC YPTS_4036 4506606 - 4506106 - | hypothetical protein TERM 4712 4506374 - 4506387 + g 83 -2.3 -5.64421 | opp_overlap 4506369 CCATTCAAATCATAC TTCGG TATG CCGTA TTTTTTCTTTAACAT TERM 4713 4506567 - 4506591 + g 73 -5.1 -4.53225 | gap 1, opp_overlap 4506558 4506555 4506571 AGAGTACGCCAACAG CG-AACATCC CAAATA GGATGTTACG TTTAATTTTTTTCAT YPTS_4037 4507194 - 4506688 - | hypothetical protein YPTS_4038 4508050 - 4507196 - | hypothetical protein TERM 4714 4507562 - 4507545 - G 71 -7.1 -4.03413 | opp_overlap 4507545 ACTTTGTCAGATAAA GGATAAT GTCC ATTATCC CAATCTATTTTTTCC TERM 4715 4508140 - 4508116 - R 100 -12.1 -3.80625 | CCGTCATAACGCAAA GCGGCATCCAG TAA CAAGATGCCGC CCCAAATCATTATCA YPTS_4039 4511356 - 4508153 - | outer membrane autotransporter TERM 4716 4508842 - 4508852 + g 77 -6.8 -4.63527 | opp_overlap 4508826, overlap 4508826 4508825 CGCCAGTCACTTGCG TGCC TGC GGCA TTTTTGGCCTGATAG TERM 4717 4512145 - 4512129 - g 82 -5.1 -5.08011 | AAAACCGGCAAAAAA GCCATCT CTC ATATGGC CCGCCTCAGTGATCG TERM 4718 4512419 - 4512404 - g 75 -5.4 -4.7173 | overlap 4512406 CACCACACTTAAAAA TACGGT GAAT ACCGCA ATCCAGCAACGCACC TERM 4719 4512821 - 4512810 - g 81 -3.6 -5.4756 | AAGCCGAAGAAAAAA GCGC TGTT ACGC GGAGCCCTCATTGCC YPTS_4040 4512039 - 4513121 + | ribonuclease TERM 4720 4513801 - 4513813 + G 79 -3.3 -5.27779 | opp_overlap 4513767 TGGCAATAACCGCAC TGCCC TCT GGGGA TTTTTTACTGTTGGC TERM 4721 4513859 - 4513836 - g 70 -8.1 -3.85698 | CTGTTGGCCGACAAA GCGAACCTG ATGACG CAGGATCGC GCCTCAGCAGAGGAA YPTS_4041 4513125 - 4513922 + | CDP-diacylglycerol pyrophosphatase YPTS_4042 4516152 - 4513927 - | AsmA family protein TERM 4722 4516446 - 4516431 - R 80 -9 -3.98159 | CAGGAGAAGATGAAA GGCGAT CATT ATCGCC TTAGGGAGCGTTAGC YPTS_4043 4517302 - 4516457 - | diguanylate phosphodiesterase YPTS_4044 4517521 - 4517721 + | 4-oxalocrotonate tautomerase TERM 4723 4517794 - 4517776 - f 79 -3.2 -5.34555 | opp_overlap 4517777, overlap 4517769 4517777 TTACATCATAAAAAA TTTAAAAC ACC GTTTTAAT CCTATTGACTCTGGA YPTS_4045 4518000 - 4518944 + | ribokinase-like domain-containing protein TERM 4724 4519031 - 4518976 - T 86 -11.3 -3.38991 | gap 1, opp_overlap 4518984 4519030, overlap 4518974 AGGCCGCGAATAACA GACGTTAA-TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCATTTTACGCC TGGCTAACGTGGCCT TERM 4725 4518984 - 4519022 + T 100 -12.5 -4.11692 | opp_overlap 4518976 4518974 AATAACAGACGTTAA TGACCGATCGTTGCAGG ATAAA CCTACAGCCATCGGTCA TTTTACGCCTGGCTA YPTS_4046 4520607 - 4519108 - | peptidase M16 domain-containing protein TERM 4726 4519446 - 4519468 + g 88 -7 -5.05601 | TACGCGCATAGGTGG CGAACAACTT ACT GAGTTGGTCG TTTTTCTGTGTCATC TERM 4727 4520082 - 4520051 - G 76 -8.6 -4.00042 | opp_overlap 4520054, overlap 4520054 TGGCCGATTAAAGAA GAACCTTTGAGGCG ATAA CGCCACCACGGTTC CTGAATATTTTGTGG TERM 4728 4520384 - 4520372 - G 74 -9.1 -3.77464 | opp_overlap 4520371 4520365 4520363 AGACGAGGCAGTAAA TGGGC AAA GCCCA CTTCCTGTGTATTTT YPTS_4047 4520794 - 4520910 + | hypothetical protein TERM 4729 4520929 - 4520899 - T 100 -17.7 -2.9294 | overlap 4520917 GACATTATGCAGAGA CGCTACCAGTGAC AGCAA GCCACTGGTAGCG AATTGAAGGGAGAAA YPTS_4048 4522261 - 4520972 - | sodium:dicarboxylate symporter YPTS_4049 4523196 - 4522717 - | coagulation factor 5/8 type domain-containing protein YPTS_4050 4525039 - 4523321 - | periplasmic pectate lyase TERM 4730 4525236 - 4525213 - R 72 -9.5 -3.14344 | opp_overlap 4525213 4525226 4525231 GACTCGGCCCATCAA GGGGCCTCG CCTCTT CGAGGCCGC AGCAAGCAGCCTTCC YPTS_4051 4525989 - 4525285 - | oligogalacturonate-specific porin YPTS_4052 4528645 - 4526630 - | diguanylate cyclase/phosphodiesterase YPTS_4053 4530074 - 4528959 - | glycoside hydrolase family protein YPTS_4054 4531254 - 4530178 - | oligopeptide/dipeptide ABC transporter, ATPase subunit YPTS_4055 4532231 - 4531251 - | oligopeptide/dipeptide ABC transporter, ATPase subunit YPTS_4056 4533147 - 4532245 - | binding-protein-dependent transport systems inner membrane component YPTS_4057 4534177 - 4533158 - | binding-protein-dependent transport systems inner membrane component TERM 4731 4534201 - 4534226 + r 75 -8.9 -3.64487 | opp_overlap 4534201 4534200 CTCTCTGTGTAGAAT GCCGGGCTGCT CATA GGCAACCTGGC TTATTAAACCTCTCC TERM 4732 4534445 - 4534412 - R 73 -5.9 -4.50159 | overlap 4534414 TTTAACCTAAATAAA TAGACCGATGAACGT TGAT ACGCACACCGGTCCG GTATAAGGGTAAAAT TERM 4733 4534443 - 4534414 - R 88 -10.7 -3.8535 | overlap 4534412 TAACCTAAATAAATA GACCGATGAACGT TGAT ACGCACACCGGTC CGGTATAAGGGTAAA YPTS_4058 4536067 - 4534460 - | extracellular solute-binding protein YPTS_4059 4536676 - 4536470 - | hypothetical protein YPTS_4060 4538499 - 4536736 - | polypeptide-transport-associated domain-containing protein TERM 4734 4538572 - 4538551 - R 70 -3.7 -4.90918 | overlap 4538546 ACAAAATCAATAAAA GTTAGCCAC GAAA GCAACTAAC TTTAAATAAAAAATC YPTS_4061 4539999 - 4538608 - | filamentous haemagglutinin outer membrane protein TERM 4735 4540281 - 4540300 + r 100 -13.6 -3.78904 | opp_overlap 4540281 AATGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4736 4540300 - 4540281 - R 100 -13.6 -5.63504 | opp_overlap 4540281 AATGGCACAAAAAAA CCCTGACG TTAC CGTCAGGG TTCTTAAATTTGGTC TERM 4737 4540478 - 4540442 - R 70 -8.1 -3.62775 | gap 1, opp_overlap 4540445, overlap 4540443 4540468 ATCACTTTTTAATAA CCTGCGGATGACTGCT GTTAAA AGCA-TCACCCGCAGT GAAAATGGCCGCCTT TERM 4738 4540477 - 4540443 - R 81 -11.6 -2.77344 | gap 1, opp_overlap 4540445, overlap 4540442 4540468 TCACTTTTTAATAAC CTGCGGATGACTGCT GTTAAA AGCA-TCACCCGCAG TGAAAATGGCCGCCT YPTS_4063 4541835 - 4540504 - | phosphoglycerate transporter TERM 4739 4540707 - 4540687 - G 71 -6.7 -4.21351 | opp_overlap 4540690 AAATAGCCCAACAAA GCCGGTTGC AGC GCCAGCGGC ATCCTTATGAGAGCA YPTS_4064 4543459 - 4541930 - | integral membrane sensor signal transduction histidine kinase TERM 4740 4543043 - 4543028 - G 71 -8.2 -3.69338 | opp_overlap 4543032, overlap 4543019 4543031 AACCAACCCTAATAA GAGCGC CATT GCGCCC TGCCCACTGGCTATC YPTS_4065 4544046 - 4543456 - | two component LuxR family transcriptional regulator TERM 4741 4544155 - 4544127 - R 74 -4.6 -4.81551 | gap 1, overlap 4544128 4544129 GAGGCACATCAAAAA TTGGGCCAGACTT GGGT AAGCCTGGCC-AG TTACGGCTAAATTGC TERM 4742 4544154 - 4544129 - R 71 -9.7 -2.68202 | overlap 4544128 4544127 GGCACATCAAAAATT GGGCCAGACTT GGGT AAGCCTGGCCA GTTACGGCTAAATTG YPTS_4066 4545853 - 4544162 - | sulfatase TERM 4743 4546283 - 4546258 - R 100 -10.3 -4.46656 | overlap 4546259 4546260 GGCAGAAGAGTAAAA TGCCCGCGCCA GAGA TGGCGCGGGTC GAGCTCCCAAGGAAG TERM 4744 4546282 - 4546259 - R 100 -13.8 -3.27271 | overlap 4546258 4546260 GCAGAAGAGTAAAAT GCCCGCGCCA GAGA TGGCGCGGGT CGAGCTCCCAAGGAA TERM 4745 4546281 - 4546260 - R 100 -17.3 -2.5564 | overlap 4546259 4546258 CAGAAGAGTAAAATG CCCGCGCCA GAGA TGGCGCGGG TCGAGCTCCCAAGGA TERM 4746 4546364 - 4546375 + r 82 -5.8 -5.00616 | overlap 4546360 GTCGCGAGCACGTTG CCAG CAGC CTGG TTTTTTGCAGGCAAA YPTS_4067 4547854 - 4546391 - | membrane protein TERM 4747 4547644 - 4547661 + g 73 -2.1 -5.00895 | gap 1, overlap 4547644 4547645 TAATTCGGACTTCAT C-GAAAAT ATT ATTTTCAG TTTTTATGTAATCCG TERM 4748 4547773 - 4547793 + g 74 -9.1 -3.72324 | opp_overlap 4547772 GTGTATCGTAGATAC GTATTGCCA GTA TGGTAATAC TTATTACTACCAATA TERM 4749 4548329 - 4548299 - R 80 -4.6 -5.20328 | overlap 4548300 CTTGAAAAAAATAAA TCAGGCCGCTGATA CCC CATCAACCGCCCGT TAACATTCGTTCCCT TERM 4750 4548328 - 4548300 - R 70 -8.1 -3.7057 | overlap 4548299 TTGAAAAAAATAAAT CAGGCCGCTGATA CCC CATCAACCGCCCG TTAACATTCGTTCCC YPTS_4068 4549747 - 4548344 - | amino acid permease-associated region YPTS_4069 4551646 - 4550114 - | histidine ammonia-lyase YPTS_4070 4553334 - 4551643 - | urocanate hydratase TERM 4751 4552646 - 4552629 - G 71 -6.9 -4.20769 | opp_overlap 4552627 4552629 ACAGTGCAATAGAAA CCGCGAC ACCT GTAGCGG TATATTTCTCGATGC YPTS_4071 4554061 - 4554384 + | pyridoxal-phosphate dependent protein TERM 4752 4554893 - 4554876 - g 73 -7.1 -4.20696 | opp_overlap 4554878 GCATTAACGTTAAAA CACTAAT GAAA ATTAGTG TTAAACCTCATGGGG YPTS_4072 4554377 - 4554925 + | phosphoribosyltransferase TERM 4753 4555923 - 4555906 - g 71 -2.7 -4.99043 | overlap 4555909 TCGGCATAAACAAAA TTATTGG GAAC CCAAAAA CAAAAGGGGCATAAC YPTS_4073 4555008 - 4555937 + | hypothetical protein TERM 4754 4556440 - 4556450 + G 87 -6.8 -5.17054 | opp_overlap 4556430 CAAGATAAGCAGAGT GCGT ATC ACGC TTTTTTGGCTATTCT TERM 4755 4556735 - 4556724 - g 78 -5.8 -4.72272 | opp_overlap 4556728, overlap 4556725 TCTGGGGATCAAAAA TGGC CCTA GCCA TGCGGAGGTGATGAT YPTS_4074 4555939 - 4557183 + | phosphoribosylglycinamide synthetase YPTS_4075 4557706 - 4558659 + | periplasmic binding protein YPTS_4076 4558669 - 4559628 + | transport system permease protein TERM 4756 4559712 - 4559732 + G 83 -9.7 -4.25256 | overlap 4559709 TATTGCTACTGAGCA TCATCGCTC TCG GTGCGATGA TTATTTTCATGACAA YPTS_4077 4559618 - 4560625 + | transport system permease protein YPTS_4078 4560622 - 4561380 + | ABC transporter related YPTS_4079 4561877 - 4561377 - | hypothetical protein YPTS_4081 4562575 - 4562168 - | hypothetical protein TERM 4757 4562759 - 4562774 + r 100 -9 -4.81249 | opp_overlap 4562759 TTATTAATCTTTAAA GGCATC GCAC GATGCC TTTTTACATTTAGGG TERM 4758 4562774 - 4562759 - R 75 -9 -3.61764 | opp_overlap 4562759 TTATTAATCTTTAAA GGCATC GCAC GATGCC TTTTTACATTTAGGG YPTS_4083 4564314 - 4563457 - | hypothetical protein YPTS_4084 4565002 - 4564538 - | hypothetical protein YPTS_4085 4565294 - 4564959 - | hypothetical protein YPTS_4086 4565785 - 4565306 - | DNA repair protein RadC TERM 4759 4565473 - 4565503 + g 71 -8.2 -3.63968 | opp_overlap 4565473, overlap 4565460 GGCAATGCGCCAGAA GCACCGCTGCAGCA TTG TGTTGCAGTGCCGC TTTCACGATTTCGCG TERM 4760 4565929 - 4565905 - R 95 -7.8 -5.0916 | TCCTTAATACAAAAA GCCCCATCGC GATCA GCGACAGAGC TCGAAGTGAGTAGTA YPTS_4087 4566588 - 4565968 - | hypothetical protein YPTS_4088 4567170 - 4566616 - | hypothetical protein TERM 4761 4566928 - 4566907 - G 79 -10.1 -3.64487 | CCATACCTGTAACAA GCGCCAGAG CTTC CCCTGACGC TCGTCACGTTGACGG TERM 4762 4567398 - 4567364 - R 79 -7.8 -4.38114 | overlap 4567360 4567366 AAAACCTATAACAAA CTTGTGTTCGATCGGC GAA ACAGATCGAACGCATG ACAGGTTTCTAGACA YPTS_4089 4568089 - 4567418 - | hypothetical protein YPTS_4090 4568472 - 4568143 - | IstB ATP binding domain-containing protein YPTS_4091 4569101 - 4569352 + | hypothetical protein YPTS_4092 4570182 - 4569403 - | IstB ATP binding domain-containing protein TERM 4763 4570101 - 4570115 + g 82 -11.4 -3.3506 | overlap 4570114 CTGCCTGTTGTGACA GCGCAG GCG CTGCGC TTATAAGGCTTTCCA YPTS_4093 4571204 - 4570182 - | integrase catalytic region TERM 4764 4571155 - 4571170 + g 71 -4.6 -4.56914 | overlap 4571156 GCCCGGCTACTCATT CCCTGC TTGT GCAGGA TTTTAATTTCCATAA TERM 4765 4571226 - 4571208 - H 100 -13.2 -4.01078 | AAAAGTGACCATAAA CTCTCCTG AAT CAGGAGAG CAGATTACCCCCTGG YPTS_4094 4571274 - 4571681 + | hypothetical protein TERM 4766 4571851 - 4571828 - T 93 -8.8 -4.41616 | opp_overlap 4571844, overlap 4571830 ATCTTTCCAAACAAA TAGCCGGAGC TGTC ACTCCGGCTC GGATTCACTCATTAC TERM 4767 4571849 - 4571830 - T 95 -11.4 -3.81557 | opp_overlap 4571844, overlap 4571828 CTTTCCAAACAAATA GCCGGAGC TGTC ACTCCGGC TCGGATTCACTCATT YPTS_4095 4572777 - 4571863 - | restriction endonuclease YPTS_4096 4573650 - 4572913 - | hypothetical protein YPTS_4097 4576932 - 4573654 - | HsdR family type I site-specific deoxyribonuclease TERM 4768 4575174 - 4575184 + g 73 -5.4 -4.57569 | opp_overlap 4575174 GTTGCCCCTTCAAAC CATC ATC GATG TTTTTGACAAAATGG TERM 4769 4576873 - 4576894 + g 71 -10.1 -2.77701 | opp_overlap 4576859 4576871 4576869, overlap 4576869 4576875 ATTGCTCAAGAGAGC CAGCGCCGG GAGC TTGGCGCTG TACTCTTCCTGGAAT YPTS_4098 4577975 - 4576929 - | hypothetical protein TERM 4770 4577744 - 4577764 + g 93 -14.1 -3.36823 | opp_overlap 4577747, overlap 4577739 TTCCTTCCTGGCGAA CTATCCGGA ATT TCCGGATAG TTGAATTTTGACCAA TERM 4771 4577947 - 4577928 - G 71 -9.3 -3.53091 | opp_overlap 4577927, overlap 4577938 ATCCTCGCTTTGAAA CAGCAGG AATTCA CCTGCTG GTGGTTGAGGTAAGT YPTS_4099 4579201 - 4577972 - | restriction modification system DNA specificity subunit TERM 4772 4578324 - 4578312 - G 71 -6.3 -4.30576 | opp_overlap 4578312 TCTGTACTACCAAAA CCAAT ACC ATTGG TTAAATTAATTACAT YPTS_4100 4580714 - 4579191 - | type I restriction-modification system, M subunit YPTS_4101 4581299 - 4580721 - | hypothetical protein YPTS_4102 4581621 - 4581355 - | putative putative SinR-like protein TERM 4773 4581685 - 4581662 - R 79 -11 -3.05384 | opp_overlap 4581661 TTGGGTTTGAGTCAA CGCGACAGGC TGCA ACCTGTCGCA CCTTCATCACTAATC YPTS_4103 4583153 - 4581939 - | integrase family protein TERM 4774 4583115 - 4583125 + g 77 -8.2 -4.21098 | GTAAGCCTTATCTAT CGGC TTA GCCG TTTTCACCTTAATGT YPTS_4104 4584815 - 4583622 - | AraC family transcriptional regulator TERM 4775 4584886 - 4584867 - R 82 -5.7 -4.91459 | opp_overlap 4584867 GAACAGGCAGAAAAA TCAGCGC GGTATG GCACTGA TTTTCCTATGGGATA YPTS_4105 4586089 - 4584905 - | inner-membrane translocator TERM 4776 4585802 - 4585789 - G 74 -3.8 -4.84527 | overlap 4585790 GCCAGACATCAAAAA TGGC CGCTAT GCCA CCCAATAACCCCATC YPTS_4106 4587608 - 4586076 - | D-xylose ABC transporter, ATPase subunit TERM 4777 4587297 - 4587280 - G 79 -10.5 -3.727 | overlap 4587269 4587274 TCCATGATACCGAAA CGGCCCC ATTC GGAGCCG AGGAACATGTTCTCC YPTS_4107 4588811 - 4587816 - | D-xylose ABC transporter, periplasmic substrate-binding protein TERM 4778 4588953 - 4588968 + H 70 -2.6 -4.95484 | overlap 4588955 GTTTAATGTTAATTT TATGAT AACG ATCATG TTTTCTTTCCTCATA TERM 4779 4589257 - 4589247 - H 74 -6.8 -4.2717 | opp_overlap 4589235 ACCAGCCCAGCAAAA GCAG GGC CTGC TTCCAAGGAGTATTG TERM 4780 4589951 - 4589941 - g 70 -2.4 -4.88684 | opp_overlap 4589942 4589944, overlap 4589942 AACATAAACACAAAA CGGG TTT CCAG GGGACACTCCTTATT YPTS_4108 4589274 - 4590593 + | xylose isomerase TERM 4781 4590984 - 4591018 + G 75 -5.7 -4.59773 | gap 1, opp_overlap 4590972 4590980 AAACAACATCAGGTG CTGCGCCCCGCCATTT TATG GAATGACGGC-CGCAG TTTTTCCCAGTGCCA TERM 4782 4591700 - 4591675 - g 83 -4.6 -5.28176 | opp_overlap 4591675 CTGAGGTAGAAAAAA CCCCAATGGC TGCAAC GCCAGTGTGG TTCCTACCCTATCTT YPTS_4109 4590717 - 4592171 + | xylulokinase TERM 4783 4592214 - 4592244 + T 100 -9.1 -4.82901 | opp_overlap 4592213 4592211 4592214, overlap 4592215 AGTGCGAATAAACAC CGTGCTGGGTAAT TCATT ATTACTCAGCACA TTTTTATAGGGCCAC TERM 4784 4592215 - 4592243 + T 100 -12.6 -3.49419 | opp_overlap 4592214 4592213 4592211, overlap 4592214 GTGCGAATAAACACC GTGCTGGGTAAT TCATT ATTACTCAGCAC ATTTTTATAGGGCCA YPTS_4110 4593256 - 4592270 - | fimbrial protein YPTS_4111 4594062 - 4593295 - | Pili assembly chaperone, N-terminal TERM 4785 4593413 - 4593391 - G 75 -11.4 -2.69717 | overlap 4593390 4593386 ATCCATATAACCAAC GTTATAACGG CTA CCGCTATAAC CCGGCGTTTTAACAA YPTS_4112 4596647 - 4594155 - | fimbrial biogenesis outer membrane usher protein TERM 4786 4594707 - 4594719 + g 77 -6.3 -4.5448 | CCAGTTGGTATTGAT TGAGT TGT ACTCA TTATTTTTATGGCTA TERM 4787 4596605 - 4596619 + g 95 -2.1 -6.34616 | TTGTTAATACTTTCA CCATT AGGAA GATGG TTTTTTTTCTTTTAG TERM 4788 4596677 - 4596710 + r 93 -11.9 -3.66497 | opp_overlap 4596678 4596681, overlap 4596669 4596678 4596681 4596686 CTTATGGCGATAATA TTAATTAGAGGGGAG TTAC CTCCCCTTTAATTAC TTTAAACATTTGTTA TERM 4789 4596709 - 4596678 - R 90 -13.2 -2.53271 | opp_overlap 4596677 4596669 4596678 4596681 4596686, overlap 4596681 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 4790 4596678 - 4596709 + r 100 -15.4 -2.79175 | opp_overlap 4596678 4596681, overlap 4596677 4596669 4596681 4596686 TTATGGCGATAATAT TAATTAGAGGGGAG TTAC CTCCCCTTTAATTA CTTTAAACATTTGTT TERM 4791 4596681 - 4596706 + r 100 -12.7 -3.5332 | opp_overlap 4596681 4596678, overlap 4596678 4596677 4596669 4596686 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 4792 4596706 - 4596681 - R 80 -10.5 -3.41745 | opp_overlap 4596678 4596677 4596669 4596681 4596686, overlap 4596678 TGGCGATAATATTAA TTAGAGGGGAG TTAC CTCCCCTTTAA TTACTTTAAACATTT TERM 4793 4596686 - 4596701 + r 89 -10.4 -4.04394 | opp_overlap 4596681 4596678, overlap 4596681 4596678 4596677 4596669 ATAATATTAATTAGA GGGGAG TTAC CTCCCC TTTAATTACTTTAAA YPTS_4113 4597280 - 4596723 - | fimbrial protein TERM 4794 4597961 - 4597988 + r 75 -3.4 -5.24129 | opp_overlap 4597961 TTTAACACAATCCAA GCCACTGAGA ATAAACCC TCTCGGTAGC TTTTTTATAAACCAA TERM 4795 4598032 - 4598013 - R 85 -4.4 -5.50925 | opp_overlap 4598029 AACCAAGATAAAAAA TAACTTTA GCAT TAAAGTCA GTGTCGTATATTGGC YPTS_4114 4599154 - 4598162 - | acyltransferase 3 TERM 4796 4598733 - 4598743 + g 71 -8.2 -3.67976 | ATTGCCAGATAGCGG CCCG AAA CGGG TTTAACCTTAATAAG TERM 4797 4599514 - 4599458 - H 78 -10.3 -3.30159 | gap 1, opp_overlap 4599463 4599468 4599473, overlap 4599459 4599468 CCAATGGGGCCATAA GTGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCAA TGAAACACCCTTTTT TERM 4798 4599513 - 4599459 - H 95 -13.8 -2.57881 | gap 1, opp_overlap 4599463 4599468 4599473, overlap 4599458 4599468 CAATGGGGCCATAAG TGCACTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGGTTCA ATGAAACACCCTTTT TERM 4799 4599463 - 4599509 + H 100 -15.4 -3.05384 | gap 1, opp_overlap 4599459 4599458 4599468, overlap 4599468 4599473 GGGGCCATAAGTGCA CTGAACC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGGTTCGG TTCAATGAAACACCC TERM 4800 4599503 - 4599468 - H 93 -12.7 -3.08471 | opp_overlap 4599463 4599468 4599473, overlap 4599459 4599458 CATAAGTGCACTGAA CCCCAGATCTTGGAT CTTTTT ATCCATGATCTGGAG GTTCGGTTCAATGAA TERM 4801 4599468 - 4599504 + H 77 -10.3 -3.19192 | gap 1, opp_overlap 4599468 4599459 4599458, overlap 4599463 4599473 CATAAGTGCACTGAA CC-CCAGATCTTGGAT CTTTTT ATCCATGATCTGGAGG TTCGGTTCAATGAAA TERM 4802 4599473 - 4599483 + H 75 -5.4 -4.88736 | opp_overlap 4599468 4599459 4599458, overlap 4599468 4599463 GTGCACTGAACCCCA GATC TTG GATC TTTTTATCCATGATC YPTS_4115 4599514 - 4600029 + | IS1661 DNA-binding protein TERM 4803 4600849 - 4600831 - g 72 -11 -2.73735 | overlap 4600821 4600819 4600842 AAACAGGCGGAATGA GTCCGGCA GAA TACCGGAC TCAGGTAGAAAAGCA YPTS_4116 4600083 - 4600868 + | integrase catalytic region YPTS_4117 4601980 - 4601027 - | ornithine cyclodeaminase/mu-crystallin YPTS_4118 4602936 - 4601974 - | pyridoxal-5'-phosphate-dependent protein beta subunit YPTS_4119 4603144 - 4604445 + | hypothetical protein YPTS_4120 4604823 - 4604488 - | hypothetical protein TERM 4804 4604674 - 4604709 + g 72 -10.6 -3.05596 | gap 1, overlap 4604679 GGGGCGTAGTGCCCA GCCGGTATCGTCAT-CT TTG AGCATGGCGATATTGGC TTCGGTGCCAGAGTA TERM 4805 4605015 - 4605027 + H 77 -3.5 -5.23316 | opp_overlap 4605014 ATTTTCCAATACGAT TTTTT GCG AAAAA TTTTTTGATCTCATG YPTS_4121 4605191 - 4605604 + | heat shock protein Hsp20 YPTS_4122 4605885 - 4606349 + | heat shock protein Hsp20 TERM 4806 4606515 - 4606546 + F 100 -10.2 -4.41548 | overlap 4606517 TCCCTTGTTTGTCTT TTCACCGGAGAG ATTCCCCG CTCTCCGGTGCA TTTTGTGGCGTATCC TERM 4807 4606517 - 4606544 + F 90 -12.8 -2.54186 | overlap 4606515 CCTTGTTTGTCTTTT CACCGGAGAG ATTCCCCG CTCTCCGGTG CATTTTGTGGCGTAT YPTS_4123 4606722 - 4608380 + | YidE/YbjL duplication TERM 4808 4608408 - 4608432 + T 100 -12.9 -4.23674 | opp_overlap 4608406 4608405 CGGGCTATTAAACTT CAGGGCAGC GTAATTG GCTGCCCTG TTTGTATTGGTGAAG YPTS_4124 4609863 - 4608493 - | aminotransferase class I and II TERM 4809 4609923 - 4609913 - R 91 -5.4 -5.59502 | TAAAAAAGTAAAAAA CCAT GAA ATGG CAAGAGGAGAGAATT YPTS_4125 4610657 - 4610214 - | hypothetical protein YPTS_4126 4613125 - 4611062 - | alpha amylase catalytic region TERM 4810 4613186 - 4613220 + r 71 -4.2 -4.82901 | GGCAGATTCAGTGTG CCGCTTGGCGAAGA AATAGCC TCATCCCTGAGCGG TTTTTGTAGGGAGGA TERM 4811 4613393 - 4613360 - R 76 -9.7 -3.35597 | overlap 4613358 TTGACCTGCCAAACA TCTATTGACCCGC TAAACAGG GCAGGCCAATAGA ATTGACGGGCGGATG YPTS_4127 4614394 - 4613414 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YPTS_4128 4614931 - 4615575 + | putative transcriptional regulator TERM 4812 4615620 - 4615648 + T 72 -7.6 -3.80133 | gap 2, opp_overlap 4615635, overlap 4615617 GAAAATGGGGAGCAG TGCGGATAA-G-CC AAA GGACATTATCCGCA TGTTTTATCACGGTG YPTS_4129 4616365 - 4615706 - | OmpA/MotB domain-containing protein YPTS_4130 4616510 - 4616415 - | hypothetical protein YPTS_4131 4617179 - 4616724 - | GCN5-related N-acetyltransferase YPTS_4132 4617748 - 4617176 - | DNA-3-methyladenine glycosylase I TERM 4813 4617573 - 4617586 + g 73 -2.3 -5.00884 | overlap 4617584 TGATGGAAGCTTTTG CGGTA ATGC TCCCG TTTTTTGAGCACGGT YPTS_4133 4618114 - 4619028 + | glycyl-tRNA synthetase, alpha subunit TERM 4814 4620675 - 4620713 + G 75 -7.6 -4.25283 | gap 2, opp_overlap 4620674 TAGCGTCGATACCAT TCAGGCGGTATTGGCTCG TCGTC CGA-CCAA-ACCGGCTGA TTTTGATGCGCGAGT YPTS_4134 4619038 - 4621107 + | glycyl-tRNA synthetase, beta subunit TERM 4815 4621156 - 4621138 - f 90 -11.7 -3.61398 | CGTGCTGGGCAATAA GGGGAGC TATAC GCTCCCC TTCAGACTGCTGACA TERM 4816 4621246 - 4621220 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 4621229, overlap 4621221 4621236 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4817 4621247 - 4621221 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 4621229, overlap 4621220 4621236 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4818 4621315 - 4621354 + G 85 -7.3 -4.87786 | gap 1, opp_overlap 4621320 4621321, overlap 4621317 4621321 4621326 CGCGGGCACTTTGTC AATAACCTCAAGGGGAGC TATAC GCTCCCCTT-ACGTTATG TTTTTGTGGGGTTAG TERM 4819 4621317 - 4621352 + G 81 -9.9 -4.05669 | gap 1, opp_overlap 4621320 4621321, overlap 4621315 4621321 4621326 CGGGCACTTTGTCAA TAACCTCAAGGGGAGC TATAC GCTCCCCTT-ACGTTA TGTTTTTGTGGGGTT TERM 4820 4621349 - 4621321 - g 74 -11 -2.77013 | opp_overlap 4621317 4621315 4621321 4621326, overlap 4621320 CACTTTGTCAATAAC CTCAAGGGGAGC TATAC GCTCCCCTTACG TTATGTTTTTGTGGG TERM 4821 4621321 - 4621349 + G 76 -8.8 -4.13816 | opp_overlap 4621321 4621320, overlap 4621317 4621315 4621326 CACTTTGTCAATAAC CTCAAGGGGAGC TATAC GCTCCCCTTACG TTATGTTTTTGTGGG TERM 4822 4621326 - 4621344 + G 82 -11.7 -3.33845 | opp_overlap 4621321 4621320, overlap 4621321 4621317 4621315 TGTCAATAACCTCAA GGGGAGC TATAC GCTCCCC TTACGTTATGTTTTT YPTS_4135 4621255 - 4621488 + | hypothetical protein YPTS_4136 4621564 - 4622283 + | putative lipoprotein TERM 4823 4622407 - 4622381 - f 86 -10.1 -3.9749 | gap 1, opp_overlap 4622390, overlap 4622382 4622397 AGGCAGAAGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4824 4622408 - 4622382 - f 73 -10.1 -2.97771 | gap 1, opp_overlap 4622390, overlap 4622381 4622397 GGCAGAAGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4825 4622484 - 4622503 + G 93 -11.4 -4.44914 | opp_overlap 4622482 CTTTGTCAATAACCT CAGGGGCC TTTT GGTCCCTG TTATTTTCTTACATA YPTS_4137 4622420 - 4622593 + | hypothetical protein TERM 4826 4622596 - 4622611 + F 74 -7.6 -4.07568 | opp_overlap 4622595 4622591 4622596 CGAGCAAAAATAACT TGTGAC AAAT GTCACA TTTTAAAAACAAACA TERM 4827 4622763 - 4622775 + F 72 -6.3 -4.26903 | GTTGTTTTGTGTGAC TTTCG TCA CGAAA TTTTCGTGAGCTACG TERM 4828 4622896 - 4622928 + F 71 -4.2 -4.89567 | AAAATAATTATATCG CGCTCTTATTGTTA GCGCG TACCAATAGGGGTG TTTTATGTTTTCACC YPTS_4138 4622933 - 4624864 + | PTS system, mannitol-specific IIC subunit YPTS_4139 4625001 - 4626164 + | mannitol dehydrogenase domain-containing protein YPTS_4140 4626371 - 4626925 + | mannitol repressor, MtlR YPTS_4141 4627004 - 4627126 + | hypothetical protein TERM 4829 4627323 - 4627300 - g 83 -7.4 -4.66456 | gap 1, overlap 4627302 4627313 AAAGAAAAAGAGAAA CTGGCCGCTGA AAT TCAGC-GCCTG AAAGAAGTACGGGTA TERM 4830 4627355 - 4627344 - g 73 -2.2 -5.03715 | AGTACGGGTAAAAAA CCTG AGTG CAGA AGCTCAAAAACTGGC YPTS_4142 4627174 - 4627530 + | hypothetical protein TERM 4831 4627534 - 4627522 - T 71 -3.3 -5.0538 | opp_overlap 4627512 GGCTACGCTAAAAAA GCGTT TTG ATCGC CGCTTTGCGGTAACC TERM 4832 4627549 - 4627576 + T 80 -10.5 -3.56375 | overlap 4627548 4627545 4627541 4627551 CCGCTTTGCGGTAAC CTCTGGGTGGC ATGGCC GCCACCCGGTG TGTTGTTCCTTTTGC TERM 4833 4627551 - 4627574 + T 86 -11.7 -3.33839 | overlap 4627549 4627548 4627545 4627541 GCTTTGCGGTAACCT CTGGGTGGC ATGGCC GCCACCCGG TGTGTTGTTCCTTTT YPTS_4143 4628171 - 4627695 - | hypothetical protein YPTS_4144 4628534 - 4628629 + | hypothetical protein YPTS_4145 4628989 - 4628705 - | hypothetical protein TERM 4834 4628757 - 4628767 + g 74 -2.6 -5.06816 | TGTCTTTTTTTGTAT TTAA CGC TTAA TTTTTCTTGCAAACT TERM 4835 4628799 - 4628809 + g 100 -5.4 -6.15717 | CGTGCTTTGCTACAC GTGA CAT TCAC TTTTTTTTCTATTTC YPTS_4146 4631176 - 4629227 - | methyl-accepting chemotaxis sensory transducer TERM 4836 4631402 - 4631434 + r 76 -9.2 -3.50722 | opp_overlap 4631406, overlap 4631400 4631404 4631406 GAAACTTTAACAATA AAAATGCCAGCAAG AGGGC CTTGCTGGCATGTA TCTTTCGTACTTGAA TERM 4837 4631404 - 4631432 + r 89 -11.8 -3.32233 | opp_overlap 4631406, overlap 4631402 4631400 4631406 AACTTTAACAATAAA AATGCCAGCAAG AGGGC CTTGCTGGCATG TATCTTTCGTACTTG TERM 4838 4631430 - 4631406 - R 100 -15.1 -5.29445 | opp_overlap 4631406 4631404 4631402 4631400 CTTTAACAATAAAAA TGCCAGCAAGA GGG CCTTGCTGGCA TGTATCTTTCGTACT TERM 4839 4631406 - 4631430 + r 100 -14.4 -3.21671 | opp_overlap 4631406, overlap 4631404 4631402 4631400 CTTTAACAATAAAAA TGCCAGCAAG AGGGC CTTGCTGGCA TGTATCTTTCGTACT YPTS_4147 4632143 - 4631520 - | manganese and iron superoxide dismutase TERM 4840 4631704 - 4631726 + g 71 -8.4 -3.64184 | opp_overlap 4631721, overlap 4631705 4631721 AGCGGGCTGTCTTGG TTAGCGGTTG AAA CAACCGCCAG TTTGCCGTCGTCTTT TERM 4841 4632322 - 4632341 + r 71 -4.9 -4.7416 | overlap 4632325 ATAAAATTAATTTAT GATGCGG CGTAAC CCGCTTC TTTTTGACGTTTTAC TERM 4842 4632325 - 4632338 + r 70 -5.2 -4.45259 | overlap 4632322 AAATTAATTTATGAT GCGG CGTAAC CCGC TTCTTTTTGACGTTT TERM 4843 4632519 - 4632541 + r 95 -7.8 -5.22312 | overlap 4632531 TCGCCACTATCGTTA TATCTTTGGT GTC ACCAATGATA TTTTTTGGTGTGGAT YPTS_4148 4633401 - 4632577 - | formate dehydrogenase family accessory protein FdhD TERM 4844 4632890 - 4632927 + g 80 -9.1 -4.18018 | opp_overlap 4632877 4632876, overlap 4632892 ATCCACGCGGCAGCA TGGGTACAGCCGGTGAG TTGA CCGACCGGTTGTACCTG TTTTAGCTGGGCAAG TERM 4845 4632892 - 4632925 + g 85 -11.7 -3.69216 | opp_overlap 4632876, overlap 4632890 CCACGCGGCAGCATG GGTACAGCCGGTGAG TTGA CCGACCGGTTGTACC TGTTTTAGCTGGGCA YPTS_4149 4633598 - 4634185 + | molybdopterin oxidoreductase Fe4S4 region TERM 4846 4635320 - 4635302 - g 71 -3 -4.96501 | overlap 4635303 4635304 4635306 CCGGATAAAAACAAA GTGACAGC GGC GCTGTCGA AGCTGAAATTCTTGG YPTS_4150 4634234 - 4636645 + | formate dehydrogenase, alpha subunit TERM 4847 4637314 - 4637293 - g 82 -11.6 -3.28712 | opp_overlap 4637278, overlap 4637277 4637278 CCGTGGGTTTGATAA CGCAGGGT TATATG ACCCTGCG GGCGTCGGCGGTACC YPTS_4151 4636658 - 4637629 + | formate dehydrogenase, beta subunit TERM 4848 4637670 - 4637641 - g 100 -7 -5.77571 | overlap 4637642 ATGAAAAAAGAAAAA CCGATCCAGCGC TACAGC GCGCCGGAGCGC ATTAACCACTGGATA TERM 4849 4637669 - 4637642 - g 85 -10.5 -4.02882 | overlap 4637641 TGAAAAAAGAAAAAC CGATCCAGCGC TACAGC GCGCCGGAGCG CATTAACCACTGGAT TERM 4850 4637781 - 4637826 + G 73 -4.7 -4.81734 | gap 2, overlap 4637781 4637790 4637793 TGGTACACCACAGAT GG-CGCGCAT-TCTTCACCCC TTTGCC GGGGTGGTGATGTTCGCGGCC TTTTTGATCATGTTT YPTS_4152 4637626 - 4638300 + | formate dehydrogenase, gamma subunit TERM 4851 4638354 - 4638381 + G 73 -7.6 -4.12942 | opp_overlap 4638342 4638355 4638358, overlap 4638358 CAACGCGAAAAAGGT ACAACGGCGGGG AATA TCCCGCCGTTAC TTTTCGCAAATTTAA TERM 4852 4638380 - 4638355 - g 81 -12.6 -2.85019 | opp_overlap 4638354 4638358, overlap 4638342 4638358 AACGCGAAAAAGGTA CAACGGCGGG GAATAT CCCGCCGTTA CTTTTCGCAAATTTA TERM 4853 4638377 - 4638358 - g 86 -12.1 -3.5616 | opp_overlap 4638354 4638358, overlap 4638355 4638342 GCGAAAAAGGTACAA CGGCGGG GAATAT CCCGCCG TTACTTTTCGCAAAT TERM 4854 4638358 - 4638377 + G 90 -12.8 -3.67175 | opp_overlap 4638358 4638355 4638342, overlap 4638354 GCGAAAAAGGTACAA CGGCGGGG AATA TCCCGCCG TTACTTTTCGCAAAT YPTS_4153 4638300 - 4639229 + | formate dehydrogenase accessory protein FdhE YPTS_4154 4639425 - 4640813 + | L-seryl-tRNA selenium transferase YPTS_4155 4640810 - 4642783 + | selenocysteine-specific translation elongation factor TERM 4855 4643065 - 4643053 - f 87 -6.3 -5.18726 | CCTCCAGAATAAAAA TTGAG TCC CTCAA GGTGCCCGGTACAAC YPTS_4157 4643543 - 4643713 + | hypothetical protein TERM 4856 4644086 - 4644106 + F 95 -12.5 -3.35679 | opp_overlap 4644086 CGCGCACAGCAAAAA CCCCACGCC TTT GGCATGGGG TTATCAGTAAAACGC TERM 4857 4644106 - 4644086 - f 100 -14.7 -4.8048 | opp_overlap 4644086 CGCGCACAGCAAAAA CCCCACGCC TTT GGCATGGGG TTATCAGTAAAACGC TERM 4858 4644179 - 4644145 - f 91 -12.9 -2.87132 | opp_overlap 4644145, overlap 4644152 TGTGTTTCGCACACA GCAAAAACCCCACGC TTTGG GCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 4859 4644145 - 4644179 + F 95 -9.2 -4.50627 | opp_overlap 4644145 4644152 TGTGTTTCGCACACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 4860 4644172 - 4644152 - f 100 -10.4 -4.84527 | opp_overlap 4644145, overlap 4644145 CGCACACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG TERM 4861 4644411 - 4644401 - f 74 -6.8 -4.27316 | opp_overlap 4644401 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4862 4645523 - 4645534 + F 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4863 4645570 - 4645596 + F 70 -9.4 -2.75844 | opp_overlap 4645546 4645548, overlap 4645569 4645572 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4864 4646030 - 4646048 + F 82 -10.3 -3.57798 | overlap 4646023 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4865 4647486 - 4647523 + F 78 -5.7 -4.7629 | opp_overlap 4647486 4647480 4647489, overlap 4647489 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 4866 4647489 - 4647520 + F 78 -7.4 -4.47888 | opp_overlap 4647486 4647480 4647489, overlap 4647486 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA TERM 4867 4650003 - 4649986 - g 81 -12.7 -2.6544 | overlap 4649985 CAGGAGAATATGAAG CGGGCAG TATA CTGCCCG GCGAAATAGAGTTGG YPTS_4160 4649889 - 4650578 + | GntR domain-containing protein TERM 4868 4651884 - 4651898 + G 74 -4.2 -4.92783 | overlap 4651881 4651885 TGGGATTGCTATCAG TGCGAC TGT GTTGCG TTTTTATGATGGGTT YPTS_4161 4650658 - 4652082 + | major facilitator transporter YPTS_4162 4652249 - 4652079 - | hypothetical protein YPTS_4163 4653228 - 4652302 - | ribokinase YPTS_4164 4653698 - 4653279 - | RbsD or FucU transport TERM 4869 4653888 - 4653920 + r 76 -10 -3.29211 | gap 1, opp_overlap 4653893, overlap 4653883 4653875 4653893 TAGTGTGAATGATGA TAGAAGAGGCCGTTA TGAT TAACGGCCTCT-CAA TTAAATTTCCACTTG TERM 4870 4653916 - 4653893 - R 100 -15.4 -3.57731 | opp_overlap 4653888 4653883 4653875 4653893 TGAATGATGATAGAA GAGGCCGTTA TGAT TAACGGCCTC TCAATTAAATTTCCA TERM 4871 4653893 - 4653916 + r 100 -15.4 -2.58812 | opp_overlap 4653893, overlap 4653888 4653883 4653875 TGAATGATGATAGAA GAGGCCGTTA TGAT TAACGGCCTC TCAATTAAATTTCCA YPTS_4165 4655789 - 4653921 - | potassium uptake protein TERM 4872 4654355 - 4654388 + g 75 -11.7 -2.72471 | gap 1, opp_overlap 4654356 4654358, overlap 4654354 4654358 TTGCTCGCGACATAT ACACCGCC-GTACCGG GTA CCCGTACTGGCGGTGA CTTCTCTAGTGAAGC TERM 4873 4654387 - 4654356 - G 100 -15.2 -2.98823 | gap 1, opp_overlap 4654355 4654354 4654358, overlap 4654358 TGCTCGCGACATATA CACCGCC-GTACCGG GTA CCCGTACTGGCGGTG ACTTCTCTAGTGAAG TERM 4874 4654385 - 4654358 - G 81 -12 -3.05022 | gap 1, opp_overlap 4654355 4654354 4654358, overlap 4654356 CTCGCGACATATACA CCGCC-GTACCGG GTA CCCGTACTGGCGG TGACTTCTCTAGTGA TERM 4875 4654358 - 4654385 + g 78 -12 -2.64051 | gap 1, opp_overlap 4654358 4654356, overlap 4654355 4654354 CTCGCGACATATACA CCGCC-GTACCGG GTA CCCGTACTGGCGG TGACTTCTCTAGTGA TERM 4876 4655707 - 4655686 - G 71 -3 -4.94902 | TAATGACCAGAAAAA CACTCTCT CAAGGT ATAGAGTG GGCTGGTGCCAATAT TERM 4877 4656622 - 4656612 - g 79 -3.2 -5.18726 | CGGGTACAAGAAAAA CAGA ATT TCCG CTCACTGCTGATCAG YPTS_4166 4656063 - 4657601 + | ATPase TERM 4878 4657982 - 4657970 - g 87 -6.9 -5.02476 | overlap 4657971 AGACCTGGCAAAAAA CCCGC CAG GCGGA GATAGCCTGCAAACG YPTS_4167 4657605 - 4659071 + | von Willebrand factor type A TERM 4879 4659142 - 4659114 - T 100 -9.5 -4.84529 | TGATAAAGTTAAAAA CCCGCGATGACTG ATA CCGTTATCGCGAG TTAGCATAGGGGGAT YPTS_4168 4660162 - 4659170 - | aspartate--ammonia ligase YPTS_4169 4660332 - 4660793 + | AsnC family transcriptional regulator YPTS_4170 4660886 - 4661326 + | flavodoxin/nitric oxide synthase YPTS_4171 4661707 - 4663596 + | glucose inhibited division protein A YPTS_4172 4663741 - 4664361 + | methyltransferase GidB YPTS_4173 4665028 - 4665411 + | ATP synthase I chain TERM 4880 4665773 - 4665793 + G 78 -6.1 -4.71426 | TCATCGCACCATTAG CCCTAACAG TCT TTGTTTGGG TTTTATTGATGAACA YPTS_4174 4665451 - 4666275 + | ATP synthase F0, A subunit YPTS_4175 4666325 - 4666564 + | ATP synthase F0, C subunit YPTS_4176 4666626 - 4667096 + | ATP synthase F0, B subunit YPTS_4177 4667111 - 4667644 + | ATP synthase F1, delta subunit YPTS_4178 4667659 - 4669200 + | ATP synthase F1, alpha subunit TERM 4881 4669208 - 4669238 + F 89 -12.7 -2.82516 | gap 1, overlap 4669197 CCTGGTAACGCTATG CGGTCCTGCTTTTC GTTA GGAAAGCAGG-CCG TCTGGTAATGAGGAG YPTS_4179 4669262 - 4670125 + | ATP synthase F1, gamma subunit YPTS_4180 4670281 - 4671663 + | ATP synthase F1, beta subunit YPTS_4181 4671685 - 4672107 + | ATP synthase F1, epsilon subunit TERM 4882 4672231 - 4672256 + F 100 -14.1 -5.22794 | opp_overlap 4672231 TAAGTAACGATAGAA TGCCAGTCGGT GAAA ACTGACTGGCA TTTTTTAATACTTAT TERM 4883 4672256 - 4672231 - f 93 -11.9 -3.62476 | opp_overlap 4672231 TAAGTAACGATAGAA TGCCAGTCGGT GAAA ACTGACTGGCA TTTTTTAATACTTAT TERM 4884 4672455 - 4672488 + F 100 -10.6 -4.57353 | gap 1, opp_overlap 4672455 4672454 TCAATAAATCATAAG CAAGGATTAT-CGAA TTTCT TTCGGATAATCCTTG TTTTCTGTCGTAAAA TERM 4885 4672488 - 4672455 - f 75 -10.6 -2.80654 | gap 1, opp_overlap 4672455, overlap 4672454 TCAATAAATCATAAG CAAGGATTAT-CGAA TTTCT TTCGGATAATCCTTG TTTTCTGTCGTAAAA TERM 4886 4672567 - 4672550 - f 91 -4.8 -5.61596 | ATTTTGACAAAAAAA CGGCAA AAAACG TCGCCG ATCACCGACACTTTT TERM 4887 4673083 - 4673106 + GF 75 -8.8 -3.63515 | CAACGTCTGCTGGCC GCTAAGCCCG AGGG CGGGATTGGC TTGTTGACAGTAAAA TERM 4888 4673300 - 4673310 + GF 73 -5.4 -4.55287 | TGGATAATAATAATG CTCA AGG TGAG TTTTATATCACTGAC TERM 4889 4673474 - 4673501 + GF 73 -5.4 -4.54727 | AAAAATTATTGTTAG CGGGCGTGATGC TATT GGATCCCTCCCG TTTTGATTTGCGCGG YPTS_4182 4672726 - 4674096 + | UDP-N-acetylglucosamine pyrophosphorylase YPTS_4183 4674069 - 4674251 + | hypothetical protein YPTS_4184 4674297 - 4676126 + | glucosamine--fructose-6-phosphate aminotransferase, isomerizing TERM 4890 4676174 - 4676191 + T 100 -9.1 -5.61913 | opp_overlap 4676174 AGCGTATTAACGAAA GCCGGCA AAAT TGTCGGC TTTTTTGTCTTTATT YPTS_4185 4676404 - 4676285 - | hypothetical protein YPTS_4186 4676609 - 4677649 + | phosphate ABC transporter, periplasmic phosphate-binding protein YPTS_4187 4677878 - 4678834 + | phosphate ABC transporter, inner membrane subunit PstC YPTS_4188 4678836 - 4679723 + | phosphate ABC transporter, inner membrane subunit PstA YPTS_4189 4679804 - 4680580 + | phosphate ABC transporter, ATPase subunit YPTS_4190 4680668 - 4681390 + | phosphate uptake regulator, PhoU TERM 4891 4681400 - 4681424 + F 100 -7.8 -5.626 | AAATAATATTTAACC CCGGTCAGCC TACTC GTTTGACCGG TTTTTTTATCCACTC TERM 4892 4681953 - 4681940 - g 71 -3.9 -4.7416 | GGAAAATGCTAAAAA CAATA CTAT TATTG CCGCAGGTACACAGT YPTS_4191 4681686 - 4682357 + | hypothetical protein YPTS_4192 4682577 - 4683431 + | extracellular solute-binding protein YPTS_4193 4683614 - 4684351 + | polar amino acid ABC transporter, inner membrane subunit TERM 4893 4684456 - 4684476 + G 74 -11.1 -3.0395 | TGGTGATCAGTATCA TGGCTGGGG TAA CCTCAGCCG TATTAGGCACTGTGT TERM 4894 4685077 - 4685046 - g 82 -5.2 -5.15634 | gap 1, opp_overlap 4685047, overlap 4685050 CATGCCATTAAAAAA CA-AAGCGCCATG GCACGTT CATGGCGCTGGTG GTGTAACAAGCTAAC TERM 4895 4685072 - 4685050 - g 100 -10.6 -5.0917 | opp_overlap 4685047, overlap 4685046 CCATTAAAAAACAAA GCGCCATG GCACGTT CATGGCGC TGGTGGTGTAACAAG YPTS_4194 4684353 - 4685108 + | polar amino acid ABC transporter, inner membrane subunit YPTS_4195 4685811 - 4685143 - | HAD family hydrolase TERM 4896 4685281 - 4685266 - G 88 -8.2 -4.75472 | overlap 4685269 4685276 GGCACAGTAATAAAA CACCGG AATA CCGGCG GCAATCCCGGCCTGG TERM 4897 4685992 - 4686018 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 4685981, overlap 4685987 4685993 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4898 4685993 - 4686019 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 4685981, overlap 4685987 4685992 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4899 4686239 - 4686224 - H 75 -3.2 -5.19916 | AAAAGAGGTAAAAAA GAGTGT GATC ACGCTC TAAACAAATGGTTTT TERM 4900 4686844 - 4686869 + G 78 -6.1 -4.73677 | overlap 4686846 GGTAATCTGACCTCT CACAGTGTACT GTTG GGTGCACTGGG TTTCTTTATTATCGC TERM 4901 4687199 - 4687214 + G 78 -6 -4.75219 | ATGTGGACAGTATCA GCTCCG TTGC CGGTGC TTTTATTGGTACTTC YPTS_4196 4686304 - 4687632 + | xanthine/uracil/vitamin C permease YPTS_4197 4688177 - 4688797 + | hypothetical protein YPTS_4198 4688859 - 4689140 + | hypothetical protein YPTS_4199 4689112 - 4689525 + | hypothetical protein TERM 4902 4689595 - 4689551 - T 78 -9.3 -3.72592 | opp_overlap 4689560, overlap 4689553 4689560 AACCCCCAGTAAGAA GATGATCAACCTGCTGCGTGA TAG TGACGCAGCAGGTTATTGAGC AATAAACCGGAGCTT TERM 4903 4689593 - 4689553 - T 80 -10.5 -3.44284 | opp_overlap 4689560, overlap 4689551 4689560 CCCCCAGTAAGAAGA TGATCAACCTGCTGCGTGA TAG TGACGCAGCAGGTTATTGA GCAATAAACCGGAGC TERM 4904 4689586 - 4689560 - T 100 -15.2 -3.30452 | opp_overlap 4689560, overlap 4689553 4689551 TAAGAAGATGATCAA CCTGCTGCGTGA TAG TGACGCAGCAGG TTATTGAGCAATAAA TERM 4905 4689560 - 4689586 + T 100 -15.2 -3.62597 | opp_overlap 4689560 4689553 4689551 TAAGAAGATGATCAA CCTGCTGCGTGA TAG TGACGCAGCAGG TTATTGAGCAATAAA YPTS_4200 4690808 - 4689609 - | short-chain alcohol dehydrogenase TERM 4906 4690474 - 4690489 + g 73 -5.4 -4.65895 | opp_overlap 4690474 ATCTCATCAGAGAAC GCATCG CCGT TGATGC TTTTTGCGTACAAGC TERM 4907 4690611 - 4690595 - G 73 -3.6 -4.86731 | GGCGTTCAAAGAAAA CGCCCA GCGTA TCGGCG CCACAACCAAATGCT TERM 4908 4690783 - 4690796 + g 75 -5.9 -4.4891 | opp_overlap 4690778 4690783 GTCACACAGATAAAG CCGCG TACA CGTGG TTTTATAATCATGGG YPTS_4201 4692379 - 4691015 - | tRNA modification GTPase TrmE TERM 4909 4691642 - 4691620 - G 73 -7.7 -4.07568 | opp_overlap 4691620, overlap 4691622 TGTGTTCCCGTAAAA CATCACGGG TGGTG CCCGCGATA TCCGTTACAATCGCC TERM 4910 4692497 - 4692473 - R 100 -15.1 -4.40561 | overlap 4692470 CTTCTGTAAAAAGAA TAAGGCGGTCA TAT TGACCGCCCTA AATACTCATGATTAT TERM 4911 4692536 - 4692554 + r 73 -5.9 -4.56597 | GTTATTTTTTCTTCT CGCGGCT GTGTA AGCCACG TTTTTCCAGACCACG YPTS_4202 4694162 - 4692522 - | 60 kDa inner membrane insertion protein TERM 4912 4693200 - 4693216 + g 80 -6.5 -4.79955 | AGTCAGGTCCAGATG TGGCGCA ATT TCCGCCA TTTTATTCTGAATCT TERM 4913 4694001 - 4694017 + g 71 -9.3 -3.6053 | overlap 4693998 TTGACCCTGACCGCT GCCTGGC ACA GCCTGGC TTGCTTTATCACCGG YPTS_4203 4694422 - 4694165 - | hypothetical protein TERM 4914 4694384 - 4694348 - GR 100 -16.7 -3.14211 | ACGCGGCCCCAGCAA CGGACTGATTACGAGCT GAT AGCCCCTAATCAGCCCG ATCAGGATGCGGGAG YPTS_4204 4694712 - 4694386 - | ribonuclease P protein component YPTS_4205 4694904 - 4694764 - | ribosomal protein L34 TERM 4915 4694946 - 4694932 - R 75 -7.2 -4.29139 | CTAAACTTAAAATAA TTACTG ATT CAGTAA ACGCGTTTGGCTGCT YPTS_4206 4695427 - 4695287 - | hypothetical protein SEQUENCE gi|186897495|ref|NC_010635.1| Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01, complete sequence (length 69812) YPTS_4207 452 - 865 + | YscB family type III secretion system chaperone TERM 1 2170 - 2158 - g 74 -4.1 -4.87291 | GATGGGAACCAAAAA CCGAA TAG TTCAG GGATTGACGGAATCC TERM 2 2357 - 2371 + G 74 -10 -3.57406 | opp_overlap 2345 2354, overlap 2356 AAAGTGAGTTAACTC GCCGTA CGG TACGGC TGTTTATCATCGAAC YPTS_4208 871 - 2694 + | YscC/HrcC family type III secretion outer membrane protein TERM 3 3045 - 3024 - g 73 -5.1 -4.55287 | CCCACGCAGAGAAAA GAGCCAACC GACA GGTTACCTC GTTCACGACTTGGGA YPTS_4209 2691 - 3950 + | YscD/HrpQ family type III secretion apparatus protein YPTS_4210 3947 - 4147 + | type III secretion system protein YseE family YPTS_4211 4148 - 4411 + | type III secretion system needle protein YPTS_4212 4413 - 4760 + | YscG family type III secretion protein YPTS_4213 4757 - 5254 + | type III secretion effector, YopR family YPTS_4214 5255 - 5602 + | YscI/HrpB family type III secretion apparatus protein YPTS_4215 5609 - 6343 + | YscJ/HrcJ family type III secretion apparatus lipoprotein YPTS_4216 6346 - 6972 + | YOP protein translocation K family protein YPTS_4217 6951 - 7583 + | HrpE/YscL family type III secretion apparatus protein YPTS_4218 7808 - 8155 + | protein-tyrosine phosphatase YopH YPTS_4219 8703 - 8969 + | transposase IS3/IS911 family protein YPTS_4220 9005 - 9427 + | putative transposase TERM 4 9984 - 10005 + T 78 -8.7 -3.74693 | TTTATTATCGAGTTC GGTGACCGT CTAA ACGATCACC TTTAATACAGTGGCG TERM 5 10158 - 10122 - T 77 -11.2 -2.85999 | opp_overlap 10121 10126, overlap 10126 TTATTCTACAGCAGA TAAACCTCAACTAA TTGCTTACT TTAGTTGAGGTTTA AAGTTTCTTTGATTG TERM 6 10126 - 10154 + T 72 -7.6 -3.78141 | opp_overlap 10122 10126, overlap 10121 TCTACAGCAGATAAA CCTCAACTAA TTGCTTACT TTAGTTGAGG TTTAAAGTTTCTTTG TERM 7 10154 - 10126 - T 76 -7.6 -4.11404 | opp_overlap 10126 10121, overlap 10122 TCTACAGCAGATAAA CCTCAACTAA TTGCTTACT TTAGTTGAGG TTTAAAGTTTCTTTG YPTS_4221 11637 - 10231 - | protein-tyrosine phosphatase YopH TERM 8 11226 - 11190 - G 100 -26.7 -2.54523 | CTAGATGTGAACGCA GTCCTTCACGCACCGGG GTT CCCGGTGCGTGAAGGGC TGAATGTGAATGAGA YPTS_4222 12078 - 12554 + | integrase catalytic region TERM 9 13032 - 13006 - T 73 -5.1 -4.65895 | opp_overlap 13007, overlap 13007 GGGGTGACGGAAAAA TCTGGGATTCC GGCGT AGAACCCCAGT TAATCTGTTTCTTCA YPTS_4223 14006 - 13140 - | peptidase C55 TERM 10 14204 - 14190 - R 78 -5.8 -4.77757 | opp_overlap 14190 14189 TGCGAAAAAGGAAAA TTTGAT AGC ATCAAA AATTTTCTCTATTAC YPTS_4224 16600 - 14402 - | serine/threonine protein kinase TERM 11 14749 - 14774 + g 88 -13.3 -3.20723 | opp_overlap 14733, overlap 14738 ATAGTTGCGCTTTCG CACTCTCCTGC TGCT GCTGGAGAGTG TTCAATTGCTGCGAC TERM 12 16444 - 16434 - G 73 -2.4 -5.14985 | CGAAAGAGAGAAAAA CCAC TGT GGGG GTTCAAGCGCAACAC YPTS_4225 17057 - 16608 - | hypothetical protein TERM 13 16877 - 16844 - G 100 -5.9 -5.84432 | gap 1, opp_overlap 16854, overlap 16845 TATAACAGAAAAAAA GCT-GACTAGCGGCGC TGC GCGCCTCTGGTCCAGA AAATCCTAAGATTGG TERM 14 16876 - 16845 - G 78 -9.4 -4.08219 | gap 1, opp_overlap 16854, overlap 16844 ATAACAGAAAAAAAG CT-GACTAGCGGCGC TGC GCGCCTCTGGTCCAG AAAATCCTAAGATTG TERM 15 16854 - 16866 + g 71 -10.5 -2.78463 | opp_overlap 16845 16844 AAAAAGCTGACTAGC GGCGC TGC GCGCC TCTGGTCCAGAAAAT YPTS_4226 17215 - 17325 + | transposase IS3/IS911 family protein YPTS_4227 17545 - 17309 - | putative transposase remnant TERM 16 17710 - 17699 - R 78 -7.2 -4.45168 | GTTGCAAAAGACAAA GGCG GCTT CGCC TTGCCAGGGCTGATG YPTS_4228 18040 - 17801 - | hypothetical protein YPTS_4229 18168 - 18386 + | hypothetical protein TERM 17 18635 - 18673 + T 100 -20.2 -4.7497 | opp_overlap 18635 AACACTCATTGTAAA GCCACTCTGTTCCGGGCC GTT GGCCCGGGGCGGGGCGGC TTTTTAGTGGGTGAG TERM 18 18673 - 18635 - T 100 -13.6 -3.61922 | opp_overlap 18635 AACACTCATTGTAAA GCCACTCTGTTCCGGGCC GTT GGCCCGGGGCGGGGCGGC TTTTTAGTGGGTGAG YPTS_4230 20079 - 19213 - | incFII family plasmid replication initiator RepA TERM 19 19724 - 19705 - G 77 -4.8 -4.9792 | overlap 19707 CAGCTCAGATAAAAA GCGCAGCG CACG CGTGGCGC GGGTGATGGAAAGGT TERM 20 19895 - 19849 - G 70 -9.5 -3.15249 | gap 1 CATACCCTGCAGTAA TGCATCGATAGCACGCCGACGT AGTA ACGGCGGCATACGAT-GACGCA AACTCAGAGAACGCG TERM 21 20160 - 20186 + r 83 -8.9 -4.18018 | gap 1 ATGCACATATACTCC CTGTATAG-AGC AACA GCTTCTATACAG TTTTAAGTGGGCCCC TERM 22 20198 - 20244 + r 90 -7.4 -5.1417 | gap 1 ACAGTTTTAAGTGGG CCCCGGTAACCTTC-TCGCCT CGCCAA AGATGAGGAAGTTTATCGGGG TTTTTGCTTTTCTGG YPTS_4231 20642 - 20388 - | RepB, repA2, CopB; putative replication transcriptional regulator YPTS_4232 21019 - 20780 - | phospholipase D/transphosphatidylase YPTS_4233 21183 - 21088 - | transposase remnant YPTS_4234 21852 - 21445 - | hypothetical protein YPTS_4235 22196 - 21879 - | transposase IS3/IS911 family protein YPTS_4236 22826 - 22368 - | hypothetical protein TERM 23 22834 - 22798 - G 100 -28.3 -3.35798 | opp_overlap 22803, overlap 22803 ACTGCGTACTGATAA GTAAACCAATGGGCGGC CAT GCCGCCCATTGGTTTAC TCCAGCGCCGCGTAA TERM 24 22803 - 22829 + g 100 -22.4 -3.72576 | opp_overlap 22798 22803 GTACTGATAAGTAAA CCAATGGGCGGC CAT GCCGCCCATTGG TTTACTCCAGCGCCG TERM 25 22829 - 22803 - G 100 -22.4 -4.00868 | opp_overlap 22803, overlap 22798 GTACTGATAAGTAAA CCAATGGGCGGC CAT GCCGCCCATTGG TTTACTCCAGCGCCG YPTS_4237 22976 - 23164 + | hypothetical protein TERM 26 23464 - 23429 - T 89 -12.1 -3.30443 | opp_overlap 23434, overlap 23434 TCATTAGCATATTAA TAAAACACCGATTAC GATTAT GTAATCGGTGTTTTC CTATAGACTTGTTAA TERM 27 23434 - 23459 + T 100 -12.7 -4.35518 | opp_overlap 23429 23434 AGCATATTAATAAAA CACCGATTACG ATTA TGTAATCGGTG TTTTCCTATAGACTT TERM 28 23459 - 23434 - T 100 -12 -4.76075 | opp_overlap 23434, overlap 23429 AGCATATTAATAAAA CACCGATTAC GATTAT GTAATCGGTG TTTTCCTATAGACTT YPTS_4238 24791 - 23493 - | YadA domain-containing protein TERM 29 23954 - 23966 + g 75 -3.4 -5.0133 | AAGTTGTTCTGGCAA CACT ATTTG AGTG TTTTTTGGCCGCATC TERM 30 24419 - 24379 - G 81 -11.3 -3.65199 | AATGCCTTACTTAAA GGACCAATTGCAACAGA ATTAACG CCTGTTGCAATTGAACC AGCGCCCACAGCAAC TERM 31 24538 - 24548 + g 75 -5.4 -4.76409 | GGTTGTATTGCTTCT GCTA ATC TAGC TCTTTTTTTTTCTGG YPTS_4239 25400 - 25780 + | hypothetical protein YPTS_4240 28092 - 25777 - | transposase Tn3 family protein TERM 32 26758 - 26726 - G 70 -9.7 -3.17901 | overlap 26730 ATACCGTCAACTGAA GCCACCTCGCCGCCA CCC CAGCGGCGAGCAAGC TCCAGCGTGGACTGA TERM 33 27205 - 27222 + g 73 -9.9 -3.35774 | opp_overlap 27176 TCTCCAGGTTTCATC CAGTTGG ACCG CCAACTG TTGTACGCCTTTATG YPTS_4241 28256 - 28807 + | resolvase domain-containing protein TERM 34 29138 - 29126 - g 73 -3.4 -4.87803 | GACGTTGAAAGAAAA GAAC TTACG GTTC AGTTTACATATAGCA YPTS_4242 28826 - 29290 + | hypothetical protein YPTS_4243 29429 - 29758 + | hypothetical protein YPTS_4244 29858 - 30124 + | transposase IS3/IS911 family protein YPTS_4245 30202 - 30957 + | integrase catalytic region YPTS_4246 31530 - 31105 - | TIR chaperone family protein TERM 35 31706 - 31692 - R 70 -9.2 -2.80016 | overlap 31690 31689 CCTCATTACCAATGA GGCGGC GAC GCCACC AAGTGAATGGACTTA YPTS_4247 32303 - 31872 - | IstB ATP binding domain-containing protein YPTS_4248 33475 - 32303 - | integrase catalytic region TERM 36 33243 - 33258 + g 72 -10.4 -3.03338 | ATTGCCTTAATTTCC GCGAGG ATGA CCTCGC TATTCCAGACATTCT YPTS_4249 33516 - 33644 + | hypothetical protein YPTS_4250 33737 - 34027 + | hypothetical protein YPTS_4251 34482 - 34090 - | TIR chaperone family protein TERM 37 34614 - 34626 + H 76 -7.7 -4.11394 | CAGCGATTTTTTATA TAGCC ATC GGCTA TTTTCCCACTAAGAT YPTS_4252 34751 - 35335 + | virulence determinant YopE TERM 38 35350 - 35368 + T 71 -3 -4.99638 | opp_overlap 35348 35351, overlap 35351 ATATTGATAAAAACA AGGGGATA GTG TTTCCCCC TTTTTCTATCAATAT TERM 39 35367 - 35351 - T 74 -6.5 -4.5448 | opp_overlap 35350 35351, overlap 35348 TATTGATAAAAACAA GGGGATA GTG TTTCCCC CTTTTTCTATCAATA TERM 40 35393 - 35422 + T 74 -4.4 -5.06451 | gap 2, opp_overlap 35392, overlap 35392 35394 CAATATTGCGAATAT C--TTCGTCCCTGA TCTT TCAGGGGCGAATCG TTTTTTAGCATGCTC TERM 41 35394 - 35419 + T 100 -14.1 -3.38726 | opp_overlap 35392, overlap 35392 35393 AATATTGCGAATATC TTCGTCCCTGA TCTT TCAGGGGCGAA TCGTTTTTTAGCATG YPTS_4253 35774 - 35475 - | plasmid stabilization system protein YPTS_4254 36009 - 35767 - | CopG/Arc/MetJ family addiction module antidote protein YPTS_4255 36353 - 36153 - | putative transposase remnant TERM 42 36626 - 36600 - H 100 -13.1 -4.72986 | TATCGCTATCAAAAA GCCGACATCAT GCTTA ATGACGTCGGC AGTCGACCAGGTCAG YPTS_4256 36897 - 37346 + | glycoprotein 1b, alpha polypeptide TERM 43 37427 - 37409 - T 73 -5.9 -4.55209 | opp_overlap 37409 TATACACTAAATAAA GGCGGGC AGACA ACCCACC TTGTTCTGATCTTAT YPTS_4257 38415 - 37450 - | parB-like partition protein YPTS_4258 39578 - 38412 - | cobyrinic acid ac-diamide synthase TERM 44 38516 - 38483 - G 70 -7.6 -3.84451 | gap 2, opp_overlap 38501 38504 GCTCCCAAATCGAAA CAGCGTT--ACGCCAA GCAG CTGGCGTTGAACGCTG GTTAGCTGCCTGTTC YPTS_4259 40175 - 40324 + | phage integrase family site specific recombinase YPTS_4260 40571 - 40377 - | transposase remnant YPTS_4261 41141 - 40683 - | hypothetical protein YPTS_4262 41485 - 41168 - | transposase IS3/IS911 family protein YPTS_4263 42209 - 41592 - | TraT complement resistance family protein YPTS_4264 43367 - 42819 - | yop targeting protein YopK, YopQ TERM 45 42921 - 42904 - G 80 -4.9 -5.16133 | opp_overlap 42907, overlap 42905 AGCATAATACAAAAA CGATGAA AATT TTCATCA TATAAATATTTTTTT TERM 46 42946 - 42963 + g 71 -4.9 -4.63527 | overlap 42947 TTTTTTATGTCATCA TTCTCTA TAAG TAGAGAG TTTTTCGGATCATAA TERM 47 43470 - 43460 - H 74 -4 -4.91712 | CGTAATTTATAAAAA TAGA ATA TCTA CTCTCAATGAACTTC TERM 48 44126 - 44141 + G 72 -6.2 -4.46212 | CCTTCAGTATGATTA TGTATC GCAT GATACA TTTTGTACTCAGCAC YPTS_4265 43867 - 44835 + | cysteine protease domain-containing protein YPTS_4266 44835 - 45227 + | TIR chaperone family protein YPTS_4267 45582 - 45271 - | hypothetical protein TERM 49 46235 - 46253 + G 71 -3 -4.93898 | opp_overlap 46223, overlap 46236 46239 AACGACTAGTGATAG CCACCGCA TTG TGCGCTGC TTTTTATGCTGGTAT YPTS_4268 45931 - 46350 + | hypothetical protein YPTS_4269 47328 - 47543 + | putative transposase remnant YPTS_4270 49175 - 47586 - | YopM; putative targeted effector protein TERM 50 49154 - 49144 - G 74 -4 -5.00616 | opp_overlap 49144 GGTTCTTGCAAAAAA GTAT TAG ATAC ATTTCTTGGATTTAT YPTS_4271 49778 - 49563 - | hypothetical protein TERM 51 51710 - 51731 + G 79 -10.1 -3.74693 | TTTATTATCGAGTTC GGTGACCGC CTGA GCGATCACC TTTAATACGGTGGCA YPTS_4272 50528 - 51736 + | transposase mutator type TERM 52 52099 - 52128 + T 85 -9.4 -4.10007 | opp_overlap 52094 52100 52125, overlap 52100 52125 52125 AATTTAATAATCACA ACCCTGGATTAA CTAATA TTAATCCAGGGC TTTTCAGCACCTTAT TERM 53 52127 - 52100 - T 100 -13.6 -3.6149 | opp_overlap 52099 52100 52125 52125, overlap 52094 52125 ATTTAATAATCACAA CCCTGGATTAAC TAAT ATTAATCCAGGG CTTTTCAGCACCTTA TERM 54 52100 - 52127 + T 95 -12.9 -3.05522 | opp_overlap 52100 52094 52125, overlap 52099 52125 52125 ATTTAATAATCACAA CCCTGGATTAA CTAATA TTAATCCAGGG CTTTTCAGCACCTTA YPTS_4273 53148 - 52228 - | YopD family protein YPTS_4274 54372 - 53167 - | secretion system effector C (SseC) family protein TERM 55 53980 - 53996 + g 87 -6.5 -5.14985 | opp_overlap 53979 53981, overlap 53981 GTTTTGTTCATGAAG ACGCTGA ATA TCAGCGA TTTTTATGTCTTTGC TERM 56 53981 - 53995 + g 76 -10 -3.67364 | opp_overlap 53979 53981, overlap 53980 TTTTGTTCATGAAGA CGCTGA ATA TCAGCG ATTTTTATGTCTTTG TERM 57 53995 - 53981 - G 70 -10 -3.13403 | opp_overlap 53981 53980, overlap 53979 TTTTGTTCATGAAGA CGCTGA ATA TCAGCG ATTTTTATGTCTTTG YPTS_4275 54856 - 54350 - | type III secretion low calcium response chaperone LcrH/SycD YPTS_4276 55849 - 54869 - | low calcium response V antigen TERM 58 54977 - 54987 + g 75 -3.2 -5.08824 | opp_overlap 54972, overlap 54972 TGATGTAATATCAGA CAGC TGA GTTG TTTTTTGGCTAACCA YPTS_4277 56138 - 55851 - | type III secretion protein LcrG YPTS_4278 56620 - 56180 - | type III secretion system regulator LcrR YPTS_4279 58731 - 56617 - | HrcV family type III secretion protein TERM 59 58036 - 58005 - G 79 -9.5 -3.89822 | CAGGTACCTGAGAAA CCATCCCATCCCC GACAGT GAGGATGGAATAG AGTTGCAGTGCCTCA YPTS_4280 59062 - 58718 - | type III secretion protein YPTS_4281 59427 - 59059 - | YscX family type III secretion protein YPTS_4282 59795 - 59424 - | type III secretion chaperone SycN YPTS_4283 60060 - 59782 - | TyeA family type III secretion effector delivery regulator YPTS_4284 60922 - 60041 - | type III secretion regulator YopN/LcrE/InvE/MxiC TERM 60 61055 - 61072 + H 71 -4.1 -4.7497 | opp_overlap 61045 61044, overlap 61044 AAAACTCGCGGCTCC CGCTACA ATTT TTTAGCG TTTTTAGTCACTAAA TERM 61 61278 - 61309 + G 75 -11.6 -2.74605 | opp_overlap 61284, overlap 61275 61275 TTACTTACGTAACCC TGACAACAGCCTGT CTTT ACAGGCTGAAGTCA TAGGTTTTGCCCAAC TERM 62 61303 - 61284 - g 85 -12.2 -3.3344 | opp_overlap 61278 61275 61275 ACGTAACCCTGACAA CAGCCTGT CTTT ACAGGCTG AAGTCATAGGTTTTG YPTS_4285 61120 - 62439 + | type III secretion apparatus H+-transporting two-sector ATPase YPTS_4286 62436 - 62900 + | type III secretion YscO fmaily protein YPTS_4287 62900 - 64267 + | type III secretion system needle length determinant YPTS_4288 64264 - 65187 + | type III secretion system apparatus protein YscQ/HrcQ YPTS_4289 65184 - 65837 + | Yop virulence translocation R YPTS_4290 65839 - 66105 + | HrpO family type III secretion protein TERM 63 66569 - 66581 + G 73 -4.7 -4.67011 | opp_overlap 66567 66566, overlap 66567 66566 CAGCTATGTAAATTG GCCGG TGG CCAGC TTTTTCCCTGCAGTT YPTS_4291 66102 - 66887 + | type III secretion protein SpaR/YscT/HrcT YPTS_4292 66887 - 67951 + | YscU/HrpY family type III secretion protein TERM 64 68310 - 68348 + F 100 -19.2 -4.03234 | opp_overlap 68316, overlap 68311 CTGATTCCGATTCTA ACCAAACATCCTTTCTTT ATG AAAGAAAGGATGTTTGGC TTTATATGCGCAAGG TERM 65 68311 - 68347 + F 100 -22.7 -3.01726 | opp_overlap 68316, overlap 68310 TGATTCCGATTCTAA CCAAACATCCTTTCTTT ATG AAAGAAAGGATGTTTGG CTTTATATGCGCAAG TERM 66 68342 - 68316 - f 100 -15.4 -3.91911 | opp_overlap 68311 68310 CCGATTCTAACCAAA CATCCTTTCTTT ATG AAAGAAAGGATG TTTGGCTTTATATGC TERM 67 68719 - 68729 + G 75 -5.4 -4.73973 | opp_overlap 68717 68719 ACTCATTTCGAAACA GGTA ACC TACC TTTATTCTTTTCTAT YPTS_4293 68527 - 68922 + | type III secretion system chaperone YscW