TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.510918 %AT, 3815535 nt, 32304 terms. Intergenic: 0.584857 %AT, H2T: 580177 nt, 4581 terms; T2T: 162358 nt, 3066 terms; H2H: 226914 nt, 3324 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|170022262|ref|NC_010465.1| Yersinia pseudotuberculosis YPIII, complete genome (length 4689441) YPK_0001 37 - 1389 + | chromosomal replication initiator protein DnaA YPK_0002 1394 - 2494 + | DNA polymerase III, beta subunit TERM 1 3046 - 3067 + G 77 -4.3 -5.0538 | opp_overlap 3045 TTACGTTATTAAATG GCGGGCC AAAATTCC GGCGCGC TTTTTTAGACTGGGG TERM 2 3162 - 3143 - g 79 -11.4 -3.10082 | opp_overlap 3138, overlap 3146 AAAAAGGTTACTCAA GCAGCGCA ACGC CGCGCTGC GCCAGGTTAGTCGCT TERM 3 3164 - 3146 - g 80 -12.4 -2.7556 | opp_overlap 3138, overlap 3143 AAGGTTACTCAAGCA GCGCAACG CCG CGCTGCGC CAGGTTAGTCGCTAT TERM 4 3437 - 3426 - g 71 -7.2 -4.03234 | GTTGGGCCACATAAA GCGG ATTT CCGC ATTCGGGCCGATGGT YPK_0003 2667 - 3752 + | DNA replication and repair protein RecF YPK_0004 3772 - 6186 + | DNA gyrase, B subunit TERM 5 6223 - 6250 + F 93 -4.1 -5.81412 | gap 1 TGGCCAGATAAAAAA GTCCAG-GGTGG GAAAA CTGCCACTGGGC TTTTTTTTGCCTGAA YPK_0005 6402 - 7211 + | Cof-like hydrolase YPK_0006 7529 - 7696 + | hypothetical protein YPK_0007 8759 - 7806 - | ornithine cyclodeaminase YPK_0008 9715 - 8753 - | pyridoxal-5'-phosphate-dependent protein beta subunit YPK_0009 9923 - 11224 + | hypothetical protein YPK_0010 11602 - 11264 - | hypothetical protein TERM 6 11453 - 11488 + g 72 -10.6 -3.05596 | gap 1, overlap 11458 GGGGCGTAGTGCCCA GCCGGTATCGTCAT-CT TTG AGCATGGCGATATTGGC TTCGGTGCCAGAGTA TERM 7 11794 - 11806 + H 77 -3.5 -5.23316 | opp_overlap 11793 ATTTTCCAATACGAT TTTTT GCG AAAAA TTTTTTGATCTCATG YPK_0011 11970 - 12383 + | heat shock protein Hsp20 YPK_0012 12664 - 13128 + | heat shock protein Hsp20 TERM 8 13294 - 13325 + F 100 -10.2 -4.41548 | overlap 13296 TCCCTTGTTTGTCTT TTCACCGGAGAG ATTCCCCG CTCTCCGGTGCA TTTTGTGGCGTATCC TERM 9 13296 - 13323 + F 90 -12.8 -2.54186 | overlap 13294 CCTTGTTTGTCTTTT CACCGGAGAG ATTCCCCG CTCTCCGGTG CATTTTGTGGCGTAT YPK_0013 13501 - 15159 + | YidE/YbjL duplication TERM 10 15187 - 15211 + T 100 -12.9 -4.23674 | opp_overlap 15185 15184 CGGGCTATTAAACTT CAGGGCAGC GTAATTG GCTGCCCTG TTTGTATTGGTGAAG YPK_0014 16642 - 15272 - | aminotransferase class I and II TERM 11 16702 - 16692 - R 91 -5.4 -5.59502 | TAAAAAAGTAAAAAA CCAT GAA ATGG CAAGAGGAGAGAATT YPK_0015 17436 - 16993 - | hypothetical protein YPK_0016 19913 - 17850 - | alpha amylase catalytic region TERM 12 19974 - 20008 + r 71 -4.2 -4.82901 | GGCAGATTCAGTGTG CCGCTTGGCGAAGA AATAGCC TCATCCCTGAGCGG TTTTTGTAGGGAGGA TERM 13 20162 - 20129 - R 76 -9.7 -3.34398 | overlap 20127 TTGGCCTGCCAAACA TCTATTGACCCGC TAAACAGG GCAGGCCAATAGA ATTGACGGGCGGATG YPK_0017 21163 - 20183 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding YPK_0018 21718 - 22362 + | putative transcriptional regulator TERM 14 22407 - 22435 + T 72 -7.6 -3.80133 | gap 2, opp_overlap 22422, overlap 22404 GAAAATGGGGAGCAG TGCGGATAA-G-CC AAA GGACATTATCCGCA TGTTTTATCACGGTG YPK_0019 23152 - 22493 - | OmpA/MotB domain-containing protein YPK_0020 23965 - 23510 - | GCN5-related N-acetyltransferase YPK_0021 24534 - 23962 - | DNA-3-methyladenine glycosylase I TERM 15 24359 - 24372 + g 73 -2.3 -5.00884 | overlap 24370 TGATGGAAGCTTTTG CGGTA ATGC TCCCG TTTTTTGAGCACGGT YPK_0022 24881 - 25795 + | glycyl-tRNA synthetase, alpha subunit TERM 16 27442 - 27480 + G 75 -7.6 -4.25283 | gap 2, opp_overlap 27441 TAGCGTCGATACCAT TCAGGCGGTATTGGCTCG TCGTC CGA-CCAA-ACCGGCTGA TTTTGATGCGCGAGT YPK_0023 25805 - 27874 + | glycyl-tRNA synthetase, beta subunit TERM 17 27923 - 27905 - f 90 -11.7 -3.61398 | CGTGCTGGGCAATAA GGGGAGC TATAC GCTCCCC TTCAGACTGCTGACA TERM 18 28013 - 27987 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 27996, overlap 27988 28003 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 19 28014 - 27988 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 27996, overlap 27987 28003 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 20 28082 - 28121 + G 85 -7.3 -4.87786 | gap 1, opp_overlap 28087 28088, overlap 28084 28088 28093 CGCGGGCACTTTGTC AATAACCTCAAGGGGAGC TATAC GCTCCCCTT-ACGTTATG TTTTTGTGGGGTTAG TERM 21 28084 - 28119 + G 81 -9.9 -4.05669 | gap 1, opp_overlap 28087 28088, overlap 28082 28088 28093 CGGGCACTTTGTCAA TAACCTCAAGGGGAGC TATAC GCTCCCCTT-ACGTTA TGTTTTTGTGGGGTT TERM 22 28088 - 28116 + G 76 -8.8 -4.13816 | opp_overlap 28087 28088, overlap 28084 28082 28093 CACTTTGTCAATAAC CTCAAGGGGAGC TATAC GCTCCCCTTACG TTATGTTTTTGTGGG TERM 23 28116 - 28088 - g 74 -11 -2.77013 | opp_overlap 28088 28084 28082 28093, overlap 28087 CACTTTGTCAATAAC CTCAAGGGGAGC TATAC GCTCCCCTTACG TTATGTTTTTGTGGG TERM 24 28093 - 28111 + G 82 -11.7 -3.33845 | opp_overlap 28088 28087, overlap 28088 28084 28082 TGTCAATAACCTCAA GGGGAGC TATAC GCTCCCC TTACGTTATGTTTTT YPK_0024 28022 - 28252 + | hypothetical protein YPK_0025 28347 - 29066 + | putative lipoprotein TERM 25 29099 - 29118 + F 73 -5.6 -4.44914 | overlap 29101 AATTTGCGTATTGCG AAGGGGCC TTTT GGTCCCTG TTATTTTCTTACATA TERM 26 29101 - 29116 + F 75 -8.2 -3.8165 | overlap 29099 TTTGCGTATTGCGAA GGGGCC TTTT GGTCCC TGTTATTTTCTTACA TERM 27 29211 - 29226 + F 74 -7.6 -4.07568 | opp_overlap 29210 29206 29211 CGAGCAAAAATAACT TGTGAC AAAT GTCACA TTTTAAAAACAAACA TERM 28 29378 - 29390 + F 72 -6.3 -4.26903 | GTTGTTTTGTGTGAC TTTCG TCA CGAAA TTTTCGTGAGCTACG TERM 29 29511 - 29543 + F 71 -4.2 -4.89567 | AAAATAATTATATCG CGCTCTTATTGTTA GCGCG TACCAATAGGGGTG TTTTATGTTTTCACC YPK_0026 29548 - 31479 + | PTS system, mannitol-specific IIC subunit YPK_0027 31616 - 32779 + | mannitol dehydrogenase domain-containing protein TERM 30 32805 - 32842 + F 73 -9.1 -3.54424 | overlap 32806 32808 TAAGCCAGTTATGTC CCATTGGCCTGATAACG GAAA CGATAGCGGGCCAATGA TTTAAGACACTAAAG TERM 31 32806 - 32841 + F 88 -12.6 -2.72511 | overlap 32805 32808 AAGCCAGTTATGTCC CATTGGCCTGATAACG GAAA CGATAGCGGGCCAATG ATTTAAGACACTAAA TERM 32 32808 - 32839 + F 71 -9.4 -2.90813 | overlap 32806 32805 GCCAGTTATGTCCCA TTGGCCTGATAACG GAAA CGATAGCGGGCCAA TGATTTAAGACACTA YPK_0028 32986 - 33540 + | mannitol repressor, MtlR YPK_0029 33619 - 33741 + | hypothetical protein TERM 33 33938 - 33915 - g 83 -7.4 -4.66456 | gap 1, overlap 33917 33928 AAAGAAAAAGAGAAA CTGGCCGCTGA AAT TCAGC-GCCTG AAAGAAGTACGGGTA TERM 34 33970 - 33959 - g 73 -2.2 -5.03715 | AGTACGGGTAAAAAA CCTG AGTG CAGA AGCTCAAAAACTGGC YPK_0030 33789 - 34145 + | hypothetical protein TERM 35 34149 - 34137 - T 71 -3.3 -5.0538 | opp_overlap 34127 GGCTACGCTAAAAAA GCGTT TTG ATCGC CGCTTTGCGGTAACC TERM 36 34164 - 34191 + T 80 -10.5 -3.56375 | overlap 34163 34160 34156 34166 CCGCTTTGCGGTAAC CTCTGGGTGGC ATGGCC GCCACCCGGTG TGTTGTTCCTTTTGC TERM 37 34166 - 34189 + T 86 -11.7 -3.33839 | overlap 34164 34163 34160 34156 GCTTTGCGGTAACCT CTGGGTGGC ATGGCC GCCACCCGG TGTGTTGTTCCTTTT YPK_0031 34784 - 34308 - | hypothetical protein YPK_0032 35145 - 35240 + | hypothetical protein YPK_0033 35600 - 35316 - | hypothetical protein TERM 38 35368 - 35378 + g 74 -2.6 -5.06816 | TGTCTTTTTTTGTAT TTAA CGC TTAA TTTTTCTTGCAAACT TERM 39 35410 - 35420 + g 100 -5.4 -6.15717 | CGTGCTTTGCTACAC GTGA CAT TCAC TTTTTTTTCTATTTC YPK_0034 37787 - 35838 - | methyl-accepting chemotaxis sensory transducer TERM 40 38013 - 38045 + r 76 -9.2 -3.50722 | opp_overlap 38017, overlap 38011 38015 38017 GAAACTTTAACAATA AAAATGCCAGCAAG AGGGC CTTGCTGGCATGTA TCTTTCGTACTTGAA TERM 41 38015 - 38043 + r 89 -11.8 -3.32233 | opp_overlap 38017, overlap 38013 38011 38017 AACTTTAACAATAAA AATGCCAGCAAG AGGGC CTTGCTGGCATG TATCTTTCGTACTTG TERM 42 38041 - 38017 - R 100 -15.1 -5.29445 | opp_overlap 38015 38013 38011 38017 CTTTAACAATAAAAA TGCCAGCAAGA GGG CCTTGCTGGCA TGTATCTTTCGTACT TERM 43 38017 - 38041 + r 100 -14.4 -3.21671 | opp_overlap 38017, overlap 38015 38013 38011 CTTTAACAATAAAAA TGCCAGCAAG AGGGC CTTGCTGGCA TGTATCTTTCGTACT TERM 44 38096 - 38113 + r 70 -5.5 -4.42386 | opp_overlap 38096 TCTTTGGCTATGCAA CGGGC GGTTTAAG GCCCG TTTTATGGATAAGCG YPK_0035 38754 - 38131 - | superoxide dismutase TERM 45 38315 - 38337 + g 71 -8.4 -3.64184 | opp_overlap 38332, overlap 38316 38332 AGCGGGCTGTCTTGG TTAGCGGTTG AAA CAACCGCCAG TTTGCCGTCGTCTTT TERM 46 38933 - 38952 + r 71 -4.9 -4.7416 | overlap 38936 ATAAAATTAATTTAT GATGCGG CGTAAC CCGCTTC TTTTTGACGTTTTAC TERM 47 38936 - 38949 + r 70 -5.2 -4.45259 | overlap 38933 AAATTAATTTATGAT GCGG CGTAAC CCGC TTCTTTTTGACGTTT TERM 48 39131 - 39153 + r 78 -4.2 -5.22312 | TCGCCACTATCGTTA TATCTTTGGT GTC ATCAATGATA TTTTTTGGTGTGGAT YPK_0036 40013 - 39189 - | formate dehydrogenase family accessory protein FdhD TERM 49 39502 - 39539 + g 80 -9.1 -4.18018 | opp_overlap 39489 39488, overlap 39504 ATCCACGCGGCAGCA TGGGTACAGCCGGTGAG TTGA CCGACCGGTTGTACCTG TTTTAGCTGGGCAAG TERM 50 39504 - 39537 + g 85 -11.7 -3.69216 | opp_overlap 39488, overlap 39502 CCACGCGGCAGCATG GGTACAGCCGGTGAG TTGA CCGACCGGTTGTACC TGTTTTAGCTGGGCA YPK_0037 40210 - 40797 + | molybdopterin oxidoreductase Fe4S4 region TERM 51 41932 - 41914 - g 71 -3 -4.96501 | overlap 41915 41916 41918 CCGGATAAAAACAAA GTGACAGC GGC GCTGTCGA AGCTGAAATTCTTGG YPK_0038 40846 - 43257 + | formate dehydrogenase, alpha subunit TERM 52 43926 - 43905 - g 82 -11.6 -3.28712 | opp_overlap 43890, overlap 43889 43890 CCGTGGGTTTGATAA CGCAGGGT TATATG ACCCTGCG GGCGTCGGCGGTACC YPK_0039 43270 - 44241 + | formate dehydrogenase, beta subunit TERM 53 44282 - 44253 - g 100 -7 -5.77571 | overlap 44254 ATGAAAAAAGAAAAA CCGATCCAGCGC TACAGC GCGCCGGAGCGC ATTAACCACTGGATA TERM 54 44281 - 44254 - g 85 -10.5 -4.02882 | overlap 44253 TGAAAAAAGAAAAAC CGATCCAGCGC TACAGC GCGCCGGAGCG CATTAACCACTGGAT TERM 55 44393 - 44438 + G 73 -4.7 -4.81734 | gap 2, overlap 44393 44402 44405 TGGTACACCACAGAT GG-CGCGCAT-TCTTCACCCC TTTGCC GGGGTGGTGATGTTCGCGGCC TTTTTGATCATGTTT YPK_0040 44238 - 44912 + | formate dehydrogenase, gamma subunit TERM 56 44966 - 44993 + G 73 -7.6 -4.12942 | opp_overlap 44954 44967 44970, overlap 44970 CAACGCGAAAAAGGT ACAACGGCGGGG AATA TCCCGCCGTTAC TTTTCGCAAATTTAA TERM 57 44992 - 44967 - g 81 -12.6 -2.85019 | opp_overlap 44966 44970, overlap 44954 44970 AACGCGAAAAAGGTA CAACGGCGGG GAATAT CCCGCCGTTA CTTTTCGCAAATTTA TERM 58 44970 - 44989 + G 90 -12.8 -3.67175 | opp_overlap 44967 44954 44970, overlap 44966 GCGAAAAAGGTACAA CGGCGGGG AATA TCCCGCCG TTACTTTTCGCAAAT TERM 59 44989 - 44970 - g 86 -12.1 -3.5616 | opp_overlap 44970 44966, overlap 44967 44954 GCGAAAAAGGTACAA CGGCGGG GAATAT CCCGCCG TTACTTTTCGCAAAT YPK_0041 44912 - 45841 + | formate dehydrogenase accessory protein FdhE YPK_0042 46025 - 47413 + | L-seryl-tRNA(Sec) selenium transferase YPK_0043 47410 - 49383 + | selenocysteine-specific translation elongation factor TERM 60 49664 - 49652 - f 87 -6.3 -5.18726 | CCTCCAGAATAAAAA TTGAG TCC CTCAA GGTGCCCGGTACAAC YPK_0044 50142 - 50474 + | hypothetical protein TERM 61 50459 - 50486 + T 78 -9.2 -3.62235 | opp_overlap 50465, overlap 50457 50462 ATATAGATATCTTTC CAATAAGGAGGA ATGA TCCTCCTTGCTG TCTATTTTCTTTCAT TERM 62 50480 - 50465 - T 75 -9 -3.62224 | opp_overlap 50462 50459 50457 ATATCTTTCCAATAA GGAGGA ATGA TCCTCC TTGCTGTCTATTTTC YPK_0045 51036 - 50488 - | hypothetical protein YPK_0046 51209 - 51024 - | hypothetical protein YPK_0047 51330 - 51533 + | hypothetical protein TERM 63 51677 - 51634 - T 73 -7.4 -4.08394 | overlap 51637 ATAGCGTGGGTAAAA CTATCCTGCTGGAGAAGC TACCTGAC GCTCCTCCAGCAGGGAAT AAACTTACTCGGTAG TERM 64 51674 - 51637 - T 100 -13.5 -3.08032 | overlap 51634 GCGTGGGTAAAACTA TCCTGCTGGAGAAGC TACCTGAC GCTCCTCCAGCAGGG AATAAACTTACTCGG YPK_0048 52911 - 51682 - | major facilitator transporter YPK_0049 53310 - 53477 + | hypothetical protein TERM 65 54193 - 54183 - g 71 -8.2 -3.67976 | CTTATTAAGGTTAAA CCCG TTT CGGG CCGCTATCTGGCAAT YPK_0050 53772 - 54764 + | acyltransferase 3 TERM 66 54894 - 54913 + F 85 -4.4 -5.50925 | opp_overlap 54879 GCCAATATACGACAC TGACTTTA ATGC TAAAGTTA TTTTTTATCTTGGTT TERM 67 54965 - 54938 - f 75 -3.4 -5.24129 | opp_overlap 54938 TTGGTTTATAAAAAA GCTACCGAGA GGGTTTAT TCTCAGTGGC TTGGATTGTGTTAAA YPK_0051 55655 - 56212 + | fimbrial protein TERM 68 56258 - 56225 - f 93 -11.9 -3.66497 | opp_overlap 56226 56229, overlap 56217 56226 56229 56234 TAACAAATGTTTAAA GTAATTAAAGGGGAG GTAA CTCCCCTCTAATTAA TATTATCGCCATAAG TERM 69 56257 - 56226 - f 100 -15.4 -2.79175 | opp_overlap 56226 56229, overlap 56225 56217 56229 56234 AACAAATGTTTAAAG TAATTAAAGGGGAG GTAA CTCCCCTCTAATTA ATATTATCGCCATAA TERM 70 56226 - 56257 + F 90 -13.2 -2.53271 | opp_overlap 56226 56225 56217 56229 56234, overlap 56229 AACAAATGTTTAAAG TAATTAAAGGGGAG GTAA CTCCCCTCTAATTA ATATTATCGCCATAA TERM 71 56254 - 56229 - f 100 -12.7 -3.5332 | opp_overlap 56226 56229, overlap 56226 56225 56217 56234 AAATGTTTAAAGTAA TTAAAGGGGAG GTAA CTCCCCTCTAA TTAATATTATCGCCA TERM 72 56229 - 56254 + F 80 -10.5 -3.41745 | opp_overlap 56229 56226 56225 56217 56234, overlap 56226 AAATGTTTAAAGTAA TTAAAGGGGAG GTAA CTCCCCTCTAA TTAATATTATCGCCA TERM 73 56249 - 56234 - f 89 -10.4 -4.04394 | opp_overlap 56229 56226, overlap 56229 56226 56225 56217 TTTAAAGTAATTAAA GGGGAG GTAA CTCCCC TCTAATTAATATTAT TERM 74 56330 - 56316 - g 95 -2.1 -6.34616 | CTAAAAGAAAAAAAA CCATC TTCCT AATGG TGAAAGTATTAACAA TERM 75 58234 - 58222 - g 77 -6.3 -4.5448 | TAGCCATAAAAATAA TGAGT ACA ACTCA ATCAATACCAACTGG YPK_0052 56288 - 58786 + | fimbrial biogenesis outer membrane usher protein TERM 76 59528 - 59550 + G 75 -11.4 -2.69717 | overlap 59527 59524 TTGTTAAAACGCCGG GTTATAGCGG TAG CCGTTATAAC GTTGGTTATATGGAT YPK_0053 58879 - 59646 + | pili assembly chaperone YPK_0054 59685 - 60671 + | fimbrial protein TERM 77 60727 - 60697 - T 100 -9.1 -4.82901 | opp_overlap 60697 60696 60694, overlap 60698 GTGGCCCTATAAAAA TGTGCTGAGTAAT AATGA ATTACCCAGCACG GTGTTTATTCGCACT TERM 78 60726 - 60698 - T 100 -12.6 -3.49419 | opp_overlap 60697 60696 60694, overlap 60697 TGGCCCTATAAAAAT GTGCTGAGTAAT AATGA ATTACCCAGCAC GGTGTTTATTCGCAC YPK_0055 62224 - 60770 - | xylulokinase TERM 79 61241 - 61266 + g 83 -4.6 -5.28176 | opp_overlap 61241 AAGATAGGGTAGGAA CCACACTGGC GTTGCA GCCATTGGGG TTTTTTCTACCTCAG TERM 80 61957 - 61923 - G 75 -5.7 -4.59773 | gap 1, opp_overlap 61949 61955 TGGCACTGGGAAAAA CTGCG-GCCGTCATTC CATA AAATGGCGGGGCGCAG CACCTGATGTTGTTT YPK_0056 63667 - 62348 - | xylose isomerase TERM 81 62990 - 63000 + g 70 -2.4 -4.88684 | opp_overlap 62983 62981, overlap 62981 AATAAGGAGTGTCCC CTGG AAA CCCG TTTTGTGTTTATGTT TERM 82 63684 - 63694 + H 74 -6.8 -4.2717 | opp_overlap 63687 CAATACTCCTTGGAA GCAG GCC CTGC TTTTGCTGGGCTGGT YPK_0057 64130 - 65125 + | D-xylose ABC transporter, periplasmic substrate-binding protein TERM 83 65644 - 65661 + G 79 -10.5 -3.727 | overlap 65649 65654 GGAGAACATGTTCCT CGGCTCC GAAT GGGGCCG TTTCGGTATCATGGA YPK_0058 65333 - 66865 + | D-xylose ABC transporter, ATPase subunit TERM 84 67139 - 67152 + G 74 -3.8 -4.84527 | overlap 67137 GATGGGGTTATTGGG TGGC ATAGCG GCCA TTTTTGATGTCTGGC YPK_0059 66852 - 68036 + | monosaccharide-transporting ATPase TERM 85 68055 - 68074 + F 82 -5.7 -4.91459 | opp_overlap 68055 TATCCCATAGGAAAA TCAGTGC CATACC GCGCTGA TTTTTCTGCCTGTTC YPK_0060 68126 - 69319 + | AraC family transcriptional regulator TERM 86 70493 - 70477 - g 81 -5.9 -4.88067 | ATTGATTTAGAAAAA GGTATCT GGG AAATACC TGCTGAAGTAATGAA YPK_0061 69706 - 70896 + | integrase family protein YPK_0062 71077 - 72345 + | hypothetical protein TERM 87 72374 - 72356 - T 75 -8.8 -3.6869 | opp_overlap 72356 72357 72359, overlap 72357 72359 TATAGGAATTTTAAA GCACCTGC ATA GCAGGTGA TTCATATTATACTGA TERM 88 72356 - 72374 + T 73 -8.8 -3.43203 | opp_overlap 72356 72357 72359, overlap 72357 72359 TATAGGAATTTTAAA GCACCTGC ATA GCAGGTGA TTCATATTATACTGA TERM 89 72373 - 72357 - T 89 -12.3 -2.80732 | opp_overlap 72356 72357 72359, overlap 72356 72359 ATAGGAATTTTAAAG CACCTGC ATA GCAGGTG ATTCATATTATACTG TERM 90 72357 - 72373 + T 88 -12.3 -2.6544 | opp_overlap 72357 72356 72359, overlap 72356 72359 ATAGGAATTTTAAAG CACCTGC ATA GCAGGTG ATTCATATTATACTG YPK_0063 73151 - 72381 - | hypothetical protein TERM 91 72967 - 72981 + g 88 -7.2 -5.1287 | opp_overlap 72959 72967 GATATAAGTATAATA TATTGC TTT GCAATA TTTTTTACATATCCC YPK_0064 74259 - 73144 - | hypothetical protein TERM 92 73608 - 73585 - G 74 -6.8 -4.43642 | opp_overlap 73585 AAAATAACCAATAAA CATACGAAGT ATTA ACTCCATATG GTATTCTTTTTCAAA TERM 93 73809 - 73823 + g 73 -2.2 -5.17786 | CATCACTATTTTGAG TAAGTA TTA TATTTA TTTTTAGTTTTGTTC YPK_0065 75067 - 74300 - | N4/N6-methyltransferase family protein TERM 94 75096 - 75083 - H 73 -5.3 -4.64657 | overlap 75092 TTAAATCCTTAAAAA TGTCA TCAA TGACA GCGTCAAATCTATAC YPK_0066 75549 - 75815 + | transposase IS3/IS911 family protein YPK_0067 75893 - 76648 + | integrase catalytic region YPK_0068 77594 - 76836 - | ABC transporter related YPK_0069 78598 - 77591 - | transport system permease protein TERM 95 78504 - 78484 - G 83 -9.7 -4.25256 | overlap 78481 TTGTCATGAAAATAA TCATCGCAC CGA GAGCGATGA TGCTCAGTAGCAATA YPK_0070 79547 - 78588 - | transport system permease protein YPK_0071 80510 - 79557 - | periplasmic binding protein YPK_0072 82277 - 81033 - | phosphoribosylglycinamide synthetase TERM 96 81481 - 81492 + g 78 -5.8 -4.72272 | opp_overlap 81449, overlap 81446 ATCATCACCTCCGCA TGGC TAGG GCCA TTTTTGATCCCCAGA TERM 97 81776 - 81766 - G 87 -6.8 -5.17054 | opp_overlap 81772 AGAATAGCCAAAAAA GCGT GAT ACGC ACTCTGCTTATCTTG TERM 98 82293 - 82310 + r 70 -2.7 -4.99043 | overlap 82296 GTTATGCCCCTTTTG TTTTTGG GTTC CCAATAA TTTTGTTTATGCCGA YPK_0073 83208 - 82279 - | hypothetical protein YPK_0074 83839 - 83291 - | phosphoribosyltransferase TERM 99 83323 - 83340 + g 73 -7.1 -4.20696 | opp_overlap 83325 CCCCATGAGGTTTAA CACTAAT TTTC ATTAGTG TTTTAACGTTAATGC YPK_0075 84155 - 83832 - | pyridoxal-phosphate dependent protein TERM 100 85571 - 85588 + G 71 -6.9 -4.20769 | opp_overlap 85569 85571 GCATCGAGAAATATA CCGCTAC AGGT GTCGCGG TTTCTATTGCACTGT YPK_0076 84883 - 86574 + | urocanate hydratase YPK_0077 86571 - 88103 + | histidine ammonia-lyase YPK_0078 88470 - 89873 + | amino acid permease-associated region TERM 101 89885 - 89922 + F 82 -4.9 -5.41143 | gap 1, overlap 89888 89889 GTAAGGGAACAAATG TTAA-CGGGCGGTTGATG GGG TATCAGCGGCCCGATTTA TTTTTTTCAAGCATG TERM 102 89888 - 89918 + F 100 -8.2 -5.20328 | overlap 89885 89889 AGGGAACAAATGTTA ACGGGCGGTTGATG GGG TATCAGCGGCCCGA TTTATTTTTTTCAAG TERM 103 89889 - 89917 + F 90 -11.7 -3.7057 | overlap 89888 89885 GGGAACAAATGTTAA CGGGCGGTTGATG GGG TATCAGCGGCCCG ATTTATTTTTTTCAA TERM 104 90422 - 90402 - g 74 -9.1 -3.72324 | opp_overlap 90401 TATTGGTAGTAATAA GTATTACCA TAC TGGCAATAC GTATCTACGATACAC TERM 105 90551 - 90534 - g 73 -2.1 -5.00895 | gap 1, overlap 90535 90536 CGGATTACATAAAAA CTGAAAAT AAT ATTTTC-G ATGAAGTCCGAATTA YPK_0079 90341 - 91804 + | hypothetical protein TERM 106 91831 - 91820 - f 82 -5.8 -5.00616 | overlap 91824 TTTGCCTGCAAAAAA CCAG GCTG CTGG CAACGTGCTCGCGAC TERM 107 91912 - 91937 + F 100 -10.3 -4.46656 | overlap 91913 91914 CTTCCTTGGGAGCTC GACCCGCGCCA TCTC TGGCGCGGGCA TTTTACTCTTCTGCC TERM 108 91913 - 91936 + F 100 -13.8 -3.27271 | overlap 91912 91914 TTCCTTGGGAGCTCG ACCCGCGCCA TCTC TGGCGCGGGC ATTTTACTCTTCTGC TERM 109 91914 - 91935 + F 100 -17.3 -2.5564 | overlap 91913 91912 TCCTTGGGAGCTCGA CCCGCGCCA TCTC TGGCGCGGG CATTTTACTCTTCTG YPK_0080 92315 - 94006 + | sulfatase TERM 110 94013 - 94041 + F 74 -4.6 -4.81551 | gap 1, overlap 94014 94014 GCAATTTAGCCGTAA CT-GGCCAGGCTT ACCC AAGTCTGGCCCAA TTTTTGATGTGCCTC TERM 111 94014 - 94039 + F 71 -9.7 -2.68202 | overlap 94014 94013 CAATTTAGCCGTAAC TGGCCAGGCTT ACCC AAGTCTGGCCC AATTTTTGATGTGCC TERM 112 94642 - 94627 - g 71 -4.6 -4.59773 | GGCTATCGCCAAAAA CGGTCC ATGT GCACCG GGCTAATTTATTTGC YPK_0081 94122 - 94712 + | two component LuxR family transcriptional regulator TERM 113 95125 - 95140 + G 71 -8.2 -3.69338 | opp_overlap 95114, overlap 95113 95138 GATAGCCAGTGGGCA GGGCGC AATG GCGCTC TTATTAGGGTTGGTT YPK_0082 94709 - 96238 + | integral membrane sensor signal transduction histidine kinase TERM 114 97461 - 97481 + G 71 -6.7 -4.21351 | opp_overlap 97457 TGCTCTCATAAGGAT GCCGCTGGC GCT GCAACCGGC TTTGTTGGGCTATTT YPK_0083 96333 - 97664 + | phosphoglycerate transporter TERM 115 97690 - 97726 + F 70 -8.1 -3.62775 | gap 1, opp_overlap 97712, overlap 97688 97691 AAGGCGGCCATTTTC ACTGCGGGTGA-TGCT TTTAAC AGCAGTCATCCGCAGG TTATTAAAAAGTGAT TERM 116 97691 - 97725 + F 81 -11.6 -2.77344 | gap 1, opp_overlap 97712, overlap 97688 97690 AGGCGGCCATTTTCA CTGCGGGTGA-TGCT TTTAAC AGCAGTCATCCGCAG GTTATTAAAAAGTGA TERM 117 97868 - 97887 + F 100 -13.6 -5.63504 | opp_overlap 97868 GACCAAATTTAAGAA CCCTGACG GTAA CGTCAGGG TTTTTTTGTGCCATT TERM 118 97887 - 97868 - f 100 -13.6 -3.78904 | opp_overlap 97868 GACCAAATTTAAGAA CCCTGACG GTAA CGTCAGGG TTTTTTTGTGCCATT YPK_0085 98170 - 99561 + | filamentous haemagglutinin outer membrane protein TERM 119 99597 - 99618 + F 70 -3.7 -4.90918 | overlap 99592 GATTTTTTATTTAAA GTTAGTTGC TTTC GTGGCTAAC TTTTATTGATTTTGT YPK_0086 99670 - 101433 + | polypeptide-transport-associated domain-containing protein YPK_0087 101493 - 101699 + | hypothetical protein YPK_0088 102102 - 103709 + | 4-phytase TERM 120 103724 - 103757 + F 73 -5.9 -4.50159 | overlap 103726 ATTTTACCCTTATAC CGGACCGGTGTGCGT ATCA ACGTTCATCGGTCTA TTTATTTAGGTTAAA TERM 121 103726 - 103755 + F 88 -10.7 -3.8535 | overlap 103724 TTTACCCTTATACCG GACCGGTGTGCGT ATCA ACGTTCATCGGTC TATTTATTTAGGTTA TERM 122 103968 - 103943 - f 75 -8.9 -3.64487 | opp_overlap 103942 103943 GGAGAGGTTTAATAA GCCAGGTTGCC TATG AGCAGCCCGGC ATTCTACACAGAGAG YPK_0089 103992 - 105011 + | alkaline phosphatase YPK_0090 105022 - 105924 + | binding-protein-dependent transport systems inner membrane component YPK_0091 105938 - 106918 + | oligopeptide/dipeptide ABC transporter, ATPase subunit YPK_0092 106915 - 107991 + | oligopeptide/dipeptide ABC transporter, ATPase subunit YPK_0093 108109 - 109224 + | cellulase YPK_0094 109540 - 111555 + | diguanylate cyclase/phosphodiesterase YPK_0095 112196 - 112900 + | oligogalacturonate-specific porin TERM 123 112949 - 112972 + F 72 -9.5 -3.14344 | opp_overlap 112938 112923 112962 GGAAGGCTGCTTGCT GCGGCCTCG AAGAGG CGAGGCCCC TTGATGGGCCGAGTC YPK_0096 113146 - 114864 + | Pectate lyase YPK_0097 114989 - 115468 + | coagulation factor 5/8 type domain-containing protein TERM 124 115522 - 115493 - f 76 -10.7 -2.71791 | opp_overlap 115492 115486, overlap 115492 ATCGCTGCCGTAAAC CGCTCCTGTGCTA GTTA TTGCACAGGAGCC TGTAAGTTCTATCCC YPK_0098 115940 - 117229 + | sodium:dicarboxylate symporter TERM 125 117272 - 117302 + T 100 -17.7 -2.9294 | overlap 117273 TTTCTCCCTTCAATT CGCTACCAGTGGC TTGCT GTCACTGGTAGCG TCTCTGCATAATGTC YPK_0099 117407 - 117291 - | hypothetical protein TERM 126 117817 - 117829 + G 74 -9.1 -3.77464 | opp_overlap 117816 117810 117808 AAAATACACAGGAAG TGGGC TTT GCCCA TTTACTGCCTCGTCT TERM 127 118119 - 118150 + G 76 -8.6 -4.00042 | opp_overlap 118122, overlap 118122 CCACAAAATATTCAG GAACCGTGGTGGCG TTAT CGCCTCAAAGGTTC TTCTTTAATCGGCCA TERM 128 118755 - 118733 - g 88 -7 -5.05601 | GATGACACAGAAAAA CGACCAACTC AGT AAGTTGTTCG CCACCTATGCGCGTA YPK_0100 117594 - 119093 + | peptidase M16 domain-containing protein TERM 129 119170 - 119225 + T 86 -11.3 -3.38991 | gap 1, opp_overlap 119147 119179, overlap 119169 AGGCCACGTTAGCCA GGCGTAAAATGACCGATGGCTGTAGG TTTAT CCTGCAACGATCGGTCA-TTAACGTC TGTTATTCGCGGCCT TERM 130 119217 - 119179 - T 100 -12.5 -4.11692 | opp_overlap 119170 119169 TAGCCAGGCGTAAAA TGACCGATGGCTGTAGG TTTAT CCTGCAACGATCGGTCA TTAACGTCTGTTATT YPK_0101 120201 - 119257 - | ribokinase-like domain-containing protein TERM 131 120407 - 120425 + r 79 -3.2 -5.34555 | opp_overlap 120408, overlap 120408 120422 TCCAGAGTCAATAGG ATTAAAAC GGT GTTTTAAA TTTTTTATGATGTAA YPK_0102 120680 - 120480 - | 4-oxalocrotonate tautomerase YPK_0103 120899 - 121744 + | diguanylate phosphodiesterase TERM 132 121755 - 121770 + F 80 -9 -3.98159 | GCTAACGCTCCCTAA GGCGAT AATG ATCGCC TTTCATCTTCTCCTG YPK_0104 122049 - 124268 + | AsmA family protein YPK_0105 125070 - 124273 - | CDP-diacylglycerol diphosphatase TERM 133 124336 - 124359 + g 70 -8.1 -3.85698 | TTCCTCTGCTGAGGC GCGATCCTG CGTCAT CAGGTTCGC TTTGTCGGCCAACAG TERM 134 124394 - 124382 - G 79 -3.3 -5.27779 | opp_overlap 124386 GCCAACAGTAAAAAA TCCCC AGA GGGCA GTGCGGTTATTGCCA YPK_0106 126174 - 125074 - | ribonuclease TERM 135 125392 - 125403 + g 81 -3.6 -5.4756 | GGCAATGAGGGCTCC GCGT AACA GCGC TTTTTTCTTCGGCTT TERM 136 125794 - 125809 + g 75 -5.4 -4.7173 | overlap 125796 GGTGCGTTGCTGGAT TGCGGT ATTC ACCGTA TTTTTAAGTGTGGTG TERM 137 126068 - 126084 + g 82 -5.1 -5.08011 | CGATCACTGAGGCGG GCCATAT GAG AGATGGC TTTTTTGCCGGTTTT TERM 138 127986 - 127974 - g 74 -2.7 -5.0538 | CGCTATCGTAAAAAA TACCA CGG TGATA ACCCAAGGGAATAAC TERM 139 129376 - 129366 - g 77 -6.8 -4.63527 | opp_overlap 129368, overlap 129367 129368 CTATCAGGCCAAAAA TGCC GCA GGCA CGCAAGTGACTGGCG YPK_0107 126853 - 130065 + | outer membrane autotransporter TERM 140 130078 - 130102 + F 100 -12.1 -3.80625 | TGATAATGATTTGGG GCGGCATCTTG TTA CTGGATGCCGC TTTACGTTATGACGG YPK_0108 130167 - 131036 + | hypothetical protein YPK_0109 131023 - 131526 + | hypothetical protein YPK_0110 131595 - 132101 + | hypothetical protein TERM 141 132211 - 132242 + T 70 -7.2 -3.74872 | opp_overlap 132204 132209, overlap 132213 GTGGAAAATAGGATG TCCCAACGGCCAGA GATA TCTGACCGTCGGTA TTTGATAAAGTCCCT TERM 142 132213 - 132240 + T 78 -9.8 -3.4582 | opp_overlap 132204 132209, overlap 132211 GGAAAATAGGATGTC CCAACGGCCAGA GATA TCTGACCGTCGG TATTTGATAAAGTCC YPK_0111 133483 - 132347 - | glycerate kinase TERM 143 132812 - 132832 + g 73 -9.7 -3.32844 | opp_overlap 132802 ATAATGCTGCAACGC CGCGTCCAA TTG TTGCACGCG TTCTGGCGTCGCCCC YPK_0112 134762 - 133494 - | gluconate transporter YPK_0113 136067 - 134940 - | transcriptional regulator, CdaR TERM 144 135379 - 135364 - G 72 -6 -4.36262 | opp_overlap 135370, overlap 135365 ATATTCAGACTAAAA CGCGGC TGTA GCAGCG CATACAATTTGCGCA TERM 145 136213 - 136187 - R 75 -5.9 -4.70583 | gap 1, opp_overlap 136168 136187, overlap 136168 136167 GCTATTAAGATAAAA GCCAGGTT-AGC TCAT GTTCAACCTGGC TTTGTTTATTTCAGA TERM 146 136187 - 136213 + r 91 -8.1 -4.78326 | gap 1, opp_overlap 136168 136167 136187, overlap 136168 GCTATTAAGATAAAA GCCAGGTT-AGC TCAT GTTCAACCTGGC TTTGTTTATTTCAGA TERM 147 136268 - 136231 - R 95 -11.3 -3.89346 | gap 1, opp_overlap 136222, overlap 136233 TGTTTATTTCAGAAA CATGGCCCGTGCAGG-AG TCT CTGCCTGTTCGGGCCATA GTAACGAAATCATCT TERM 148 136266 - 136233 - R 89 -11.7 -3.53733 | gap 1, opp_overlap 136222, overlap 136231 TTTATTTCAGAAACA TGGCCCGTGCAGG-AG TCT CTGCCTGTTCGGGCCA TAGTAACGAAATCAT YPK_0114 137630 - 136278 - | glutathione-disulfide reductase TERM 149 136684 - 136672 - G 82 -10.5 -3.86524 | overlap 136660 AGACGTTCGGACAAA CGGCG GCC CGCCG CAACGGCAACCGGGG TERM 150 136910 - 136920 + g 73 -4.6 -4.7254 | overlap 136892 136908 136918 ATTGCAGCGTCAGGC TGCC ATC GGCG TTTTTGATAACCGCT YPK_0115 138640 - 137798 - | hypothetical protein TERM 151 138119 - 138129 + g 73 -5.4 -4.58773 | ACCTTTCACCACATC CTGA TAA TCAG TTTTCATTTCATACG YPK_0116 138969 - 141011 + | oligopeptidase A TERM 152 141068 - 141051 - g 88 -14.1 -2.74012 | opp_overlap 141051 TTATTATCTGAAGCA GGCGCCG ATCC CGGCGCC TTATCTATTCTGGCT TERM 153 141051 - 141068 + G 95 -14.1 -3.7319 | opp_overlap 141051 TTATTATCTGAAGCA GGCGCCG ATCC CGGCGCC TTATCTATTCTGGCT YPK_0117 141015 - 141785 + | hypothetical protein TERM 154 141775 - 141790 + T 70 -6 -4.37092 | overlap 141776 CTTCATCGGTGACGC CGCCGC GTTA GCGGCA TTTTCTCACCCGAAT TERM 155 141776 - 141789 + T 72 -9.5 -3.21934 | overlap 141775 TTCATCGGTGACGCC GCCGC GTTA GCGGC ATTTTCTCACCCGAA YPK_0118 143184 - 141850 - | serralysin YPK_0119 144775 - 143432 - | glutamate dehydrogenase (NADP(+)) TERM 156 144209 - 144221 + g 73 -4.9 -4.77036 | AAAGACGCAAGCGGT GTTAT TGG ATAAC TTTTTCATCATGCCA TERM 157 144934 - 144916 - R 76 -2.5 -5.252 | gap 1, overlap 144919 GATTTTGACAAAAAA TC-ATCTG GATT CAGATTGA GGGTAACGAGGAGGG TERM 158 144994 - 144974 - R 100 -11.8 -4.91109 | opp_overlap 144974 CGTCTATCACAAAAA CGCCCGCC GGAGA GGCGAGCG TTTAGCGTTACCTAA TERM 159 144974 - 144994 + r 78 -9.6 -3.6715 | opp_overlap 144974 CGTCTATCACAAAAA CGCCCGCC GGAGA GGCGAGCG TTTAGCGTTACCTAA YPK_0120 145468 - 145022 - | UspA domain-containing protein YPK_0121 146159 - 146494 + | universal stress protein B TERM 160 146525 - 146545 + T 100 -8.9 -5.15167 | opp_overlap 146525 AAAAGAATTAAAAAA GGCGACCTG ATT TAGGCCGCC TTTTTATTGCTCATC TERM 161 146545 - 146525 - T 100 -10.4 -5.43514 | opp_overlap 146525 AAAAGAATTAAAAAA GGCGACCT GATTT AGGCCGCC TTTTTATTGCTCATC YPK_0122 148236 - 146641 - | phosphate transporter TERM 162 148749 - 148737 - g 75 -3.3 -5.14563 | opp_overlap 148738, overlap 148738 CCTGGCATGAAAAAA CGCTG GGG CAGCT TTTTTGTGATGATTC TERM 163 148738 - 148748 + G 91 -6.8 -5.33785 | opp_overlap 148737 148738 CTGGCATGAAAAAAC GCTG GGG CAGC TTTTTTGTGATGATT YPK_0123 148262 - 149644 + | hypothetical protein YPK_0124 152335 - 149780 - | multi-sensor hybrid histidine kinase YPK_0125 152524 - 154047 + | ABC transporter related TERM 164 154082 - 154107 + G 76 -9.9 -3.72695 | opp_overlap 154076, overlap 154083 GTGGCAAAATCGGCC TCGCTGAAAAA AGCG TTTTTTAGCGA TTTACTGCAAACCGT TERM 165 154083 - 154096 + G 77 -3.8 -5.07107 | opp_overlap 154076, overlap 154082 TGGCAAAATCGGCCT CGCT GAAAAA AGCG TTTTTTAGCGATTTA YPK_0126 154040 - 155032 + | monosaccharide-transporting ATPase YPK_0127 155063 - 156007 + | periplasmic binding protein/LacI transcriptional regulator YPK_0128 156082 - 156765 + | hypothetical protein YPK_0129 156791 - 157651 + | ketose-bisphosphate aldolase YPK_0130 157661 - 158668 + | ribokinase-like domain-containing protein YPK_0131 159480 - 158743 - | two component transcriptional regulator TERM 166 160003 - 160019 + G 100 -9.4 -6.17292 | TCCAGTGTTTACTTA GCCAGC CGGGT GCTGGC TTTTTTTTTGCCTTT YPK_0132 159903 - 160115 + | hypothetical protein YPK_0133 160244 - 160939 + | pirin domain-containing protein TERM 167 161017 - 160994 - f 100 -8.2 -4.87291 | gap 1, opp_overlap 160989 160994 TACGTTAACTAAAAA GGGTAT-GCAC ATC GCGCTATACCC TTTTCTTTGCTAGAA TERM 168 160994 - 161017 + F 82 -6 -4.93877 | gap 1, opp_overlap 160994, overlap 160989 TACGTTAACTAAAAA GGGTAT-GCAC ATC GCGCTATACCC TTTTCTTTGCTAGAA YPK_0134 161125 - 162063 + | LacI family transcription regulator YPK_0135 163471 - 162155 - | gluconate transporter YPK_0136 163688 - 164191 + | carbohydrate kinase YPK_0137 164373 - 164606 + | hypothetical protein YPK_0138 164797 - 164937 + | hypothetical protein YPK_0139 164992 - 165381 + | hypothetical protein TERM 169 165404 - 165391 - T 79 -8.1 -4.3534 | opp_overlap 165392 GTCTAATTATTAAAA GCCTC AGAA GAGGC TTGAGGTTATTGACA TERM 170 165481 - 165495 + T 80 -2.8 -5.47399 | opp_overlap 165481 GTCAGCAGTCAAAGA CCCATT TTG AATTGG TTTTTTTGACGTTGA YPK_0140 166159 - 165566 - | multiple antibiotic resistance (MarC)-related protein TERM 171 166143 - 166127 - G 71 -2.9 -4.93968 | overlap 166129 ATCCATAATTAAAAA TAGCAAC ACA GTTGCCG CAATCATCTCAGTCA TERM 172 166141 - 166129 - G 73 -7.7 -4.08682 | overlap 166127 CCATAATTAAAAATA GCAAC ACA GTTGC CGCAATCATCTCAGT YPK_0141 166518 - 167621 + | aspartate-semialdehyde dehydrogenase TERM 173 167663 - 167680 + F 100 -9.8 -4.60949 | GTGGAAGACCCGTAA GCCCGC CAGAGT GCGGGC TTTGTTTATCGTATG TERM 174 167786 - 167806 + F 70 -2.7 -5.05782 | AATGGATTTAACAAA TTGATTTAT AAT GTAAATTAA TTTTTTAGAGTAACT YPK_0142 168356 - 168664 + | hypothetical protein YPK_0143 168671 - 168958 + | hypothetical protein YPK_0144 169116 - 169259 + | hypothetical protein TERM 175 169448 - 169467 + F 100 -10 -5.63645 | opp_overlap 169448 169446 169441 AGGAACAACAAAGCA CCCTGATC TTAT GGTCAGGG TTTTTTATATTTTAA TERM 176 169966 - 170007 + F 87 -5 -5.45726 | gap 2, opp_overlap 169974 169976, overlap 169976 ATTTTCGGGCATTAA TCCTAAAATATTATTTTTAA GATG TTAAAAATAAT-TTT-AGGA TTTTTTTAGAATATA TERM 177 169976 - 169999 + F 74 -7 -4.35095 | opp_overlap 169974 169976, overlap 169966 ATTAATCCTAAAATA TTATTTTTAA GATG TTAAAAATAA TTTTAGGATTTTTTT TERM 178 175363 - 175384 + G 70 -8 -3.90291 | TGCTAATGGCAATGC GATCACCG GTGCTG CGGTGGTC TTTAGTTCAGCCAAT TERM 179 180298 - 180319 + G 70 -8 -3.90291 | TGCTAATGGCAATGC GATCACCG GTGCTG CGGTGGTC TTTAGTTCAGCCAAT YPK_0145 170696 - 186709 + | hypothetical protein TERM 180 186863 - 186826 - T 73 -8.6 -3.71848 | opp_overlap 186828, overlap 186828 TTGTGTCAGGAATAA TAGTAATGCCAGAG GTGGGTTATA CTCTGGCATTACTT TTTATAGGGTTTTCT TERM 181 186861 - 186828 - T 83 -11.2 -3.44284 | opp_overlap 186828, overlap 186826 GTGTCAGGAATAATA GTAATGCCAGAG GTGGGTTATA CTCTGGCATTAC TTTTTATAGGGTTTT TERM 182 186828 - 186861 + T 100 -11.2 -4.90296 | opp_overlap 186828 186826 GTGTCAGGAATAATA GTAATGCCAGAG GTGGGTTATA CTCTGGCATTAC TTTTTATAGGGTTTT YPK_0146 188631 - 186934 - | signal transduction histidine kinase, LytS TERM 183 187351 - 187371 + g 73 -5.3 -4.4874 | opp_overlap 187351 AATCTCATCACTTAA CGTGACCAC ATC GTGGCTGCG TTTTAGGTTTTTACG TERM 184 188557 - 188541 - G 70 -2.1 -4.87786 | TCAAGGGGATAAAAA GCGGTGT TTT ACTCAGC AGATAGGCAATAACC YPK_0147 189137 - 191320 + | 1,4-alpha-glucan branching enzyme TERM 185 193210 - 193226 + G 79 -10.1 -3.63627 | TACCTGAAGGGGAAT GGGAGGG GAT TCCTCCC TTTGGGGTGTCAGAC YPK_0148 191322 - 193310 + | glycogen debranching enzyme GlgX YPK_0149 193320 - 194606 + | glucose-1-phosphate adenylyltransferase YPK_0150 194817 - 196247 + | glycogen/starch synthase, ADP-glucose type TERM 186 197978 - 197953 - g 100 -11.1 -4.63218 | opp_overlap 197956, overlap 197970 GTTTCTGCAATAAAA CCAACGGCGTG ACAC CACGGCGCTGG TTGGGGTTAGCCAAC TERM 187 198330 - 198340 + G 73 -8.2 -3.84406 | opp_overlap 198330 ATTTTTGCCGGTAAA GCCG CCT CGGC TTATTATAATGCCAA YPK_0151 196560 - 199007 + | glycogen/starch/alpha-glucan phosphorylase TERM 188 199052 - 199080 + T 100 -11.8 -4.86939 | gap 1, opp_overlap 199052 TGCCACCGTAAAAAA CCCTCTTCG-CGG TTAT CCGATGAAGAGGG TTTTTAAATTTCTTG TERM 189 199080 - 199052 - T 100 -9.6 -5.0538 | gap 1, opp_overlap 199052 TGCCACCGTAAAAAA CCCTCTTC-GCGG TTAT CCGATGAAGAGGG TTTTTAAATTTCTTG TERM 190 199149 - 199136 - T 70 -3.9 -4.84529 | opp_overlap 199145, overlap 199145 CCAGAAAGGCAAAAA TTAAC GAAA GTTAA ACAATGTTAAACTTT YPK_0152 200683 - 199169 - | FAD dependent oxidoreductase TERM 191 199521 - 199536 + g 71 -6.8 -4.2558 | gap 1 CCGCCGATATCCCCA CCGG-GC AAG GCACCGG TTTTAGTCCACGCTG TERM 192 199974 - 199993 + g 73 -8.6 -3.90291 | gap 1, opp_overlap 199950 TGGTTATGAACCCGA GGCA-CCAC AAT GTGGCTGCC TTTAATTAGGCGGAT YPK_0153 201082 - 201456 + | hypothetical protein YPK_0154 201765 - 202229 + | hypothetical protein TERM 193 202245 - 202221 - f 76 -7.9 -4.22524 | ATAGTTAAAATGAAA CGCGAATAAAA TTG TTTTTCTCGCG TAGTGACCGTGTTTC YPK_0155 202248 - 202664 + | hypothetical protein YPK_0156 203131 - 203298 + | hypothetical protein YPK_0157 204152 - 203394 - | DeoR family transcriptional regulator TERM 194 203907 - 203919 + g 75 -6.2 -4.63218 | overlap 203906 GCTAGCAACGCGTTG GGCG ATCCG CGCC TTTTCTTCCGACCAC YPK_0158 205023 - 204187 - | rhomboid family protein TERM 195 204509 - 204495 - G 70 -10 -3.13566 | opp_overlap 204505, overlap 204493 AGACGATAGTTAATA CCAGCA ATT TGCTGG TGCCAAGCCGTTTTT YPK_0159 205370 - 205041 - | rhodanese domain-containing protein YPK_0160 208456 - 205745 - | ATP-dependent transcription regulator LuxR TERM 196 206012 - 206002 - G 77 -4 -5.14163 | overlap 205992 ATTTATCAACAAAAA TTTC GTC GAAA TGCGCGAACTTATGC TERM 197 206109 - 206127 + g 72 -11 -2.55074 | TTGAGTTGGATCAGT TGGCGCAG TTG TTGCGCCA TGGCTTCACCTTCAA YPK_0161 208774 - 211179 + | glycogen/starch/alpha-glucan phosphorylase YPK_0162 211192 - 213288 + | 4-alpha-glucanotransferase YPK_0163 214048 - 213473 - | IscR-regulated protein YhgI YPK_0164 214809 - 214108 - | protein GntX TERM 198 214280 - 214318 + g 81 -13.1 -2.90763 | gap 1, overlap 214285 CGCACGTTCTTTCGC CGCTGTGCCGCCGTCAGC TGCT GTTG-CGGCGGCGTTGCG TGTATACGCTGTAGC TERM 199 214285 - 214313 + g 76 -11 -3.16177 | gap 1, overlap 214280 GTTCTTTCGCCGCTG TGCCGCCGTCAGC TGCT GTTG-CGGCGGCG TTGCGTGTATACGCT YPK_0165 214896 - 215672 + | bioH protein YPK_0166 215842 - 216111 + | hypothetical protein TERM 200 216249 - 216226 - T 76 -11 -2.50966 | opp_overlap 216227, overlap 216217 216225 216223 216221 ACGGAATCAACATAT TGAGATGCCC ATAT GGGCATCTCT TATTGGTGTGCGTGA TERM 201 216227 - 216248 + T 100 -14.5 -3.78034 | opp_overlap 216217 216226 216225 216223 216221 CGGAATCAACATATT GAGATGCCC ATAT GGGCATCTC TTATTGGTGTGCGTG YPK_0167 216506 - 216249 - | hypothetical protein TERM 202 216560 - 216546 - R 74 -10 -3.15579 | opp_overlap 216545 216552 CTAATGGGTGATCAA TGGCAG TTG CTGCCA CTACTTCGGCAGCAA YPK_0168 218857 - 216542 - | ferrous iron transport protein B TERM 203 218425 - 218437 + g 80 -4.7 -5.11613 | opp_overlap 218425 ATACCAATGGAATGA CCGGG CAA CCCAG TTTTTTAGATAATGT YPK_0169 219176 - 218949 - | FeoA family protein TERM 204 219680 - 219625 - R 100 -29.6 -2.90813 | opp_overlap 219630 219667, overlap 219630 TATTTTGTTAAATTA TTAAACTGCCCTCCTCATTATTGGAT ATCA ATCTAATAATGAGGAGGGCAGTTTAA TGGCCGTCCTTGTCA TERM 205 219675 - 219630 - R 100 -25.1 -3.8901 | opp_overlap 219630 219667, overlap 219625 TGTTAAATTATTAAA CTGCCCTCCTCATTATTGGAT ATCA ATCTAATAATGAGGAGGGCAG TTTAATGGCCGTCCT TERM 206 219630 - 219675 + r 100 -27.3 -3.73953 | opp_overlap 219625 219630, overlap 219667 TGTTAAATTATTAAA CTGCCCTCCTCATTATTGGAT ATCA ATCTAATAATGAGGAGGGCAG TTTAATGGCCGTCCT YPK_0170 222075 - 219700 - | RNA-binding S1 domain-containing protein TERM 207 221809 - 221832 + g 75 -5.8 -4.49337 | overlap 221813 TAGGGTGGCGTTGAT CGCCCCGGCC AGCT GGTCGGTGAG TTTTCCTTGATCTTC TERM 208 221909 - 221927 + g 76 -11.8 -2.85351 | TACCCCAGACGGCTT TCCAACTG ACG CAGTTGGA TATCATCTAACCCGC YPK_0171 222609 - 223124 + | transcription elongation factor GreB YPK_0172 223260 - 223979 + | two component transcriptional regulator YPK_0173 223976 - 225328 + | integral membrane sensor signal transduction histidine kinase TERM 209 225305 - 225330 + T 100 -14.1 -3.62046 | gap 1, opp_overlap 225314, overlap 225305 CCATTGGATGTGAAG CC-CAAGCCACC AGC GGTGGCTTGAGG TTATTGACAAAGTGC TERM 210 225305 - 225329 + T 95 -14.3 -2.77013 | opp_overlap 225314, overlap 225305 CCATTGGATGTGAAG CCCAAGCCACC AGC GGTGGCTTGAG GTTATTGACAAAGTG TERM 211 225403 - 225429 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 225392, overlap 225398 225404 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 212 225404 - 225430 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 225392, overlap 225398 225403 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 213 225494 - 225508 + T 84 -11.4 -3.14564 | opp_overlap 225498 TGTCAGCAGTCTGAA GCCACC AGC GGTGGC TTGATGGAGGGATAA TERM 214 225633 - 225610 - T 100 -6.7 -5.61913 | AATAAATAGAAAAAA GGGGCAC AATTCTGAAA GTGCCCC CTGTAACGCTAAACT YPK_0174 227286 - 225667 - | phosphoenolpyruvate carboxykinase (ATP) TERM 215 227469 - 227442 - R 100 -13.4 -3.82097 | GTGAAACGGAGGAAA TGGCCGGGCACC AATA GGTACCCGGCTA AGCATTACGAGGATT YPK_0175 228364 - 227483 - | Hsp33 protein YPK_0176 228934 - 228527 - | RNA-binding S4 domain-containing protein YPK_0177 229643 - 228963 - | HAD family hydrolase YPK_0178 231934 - 229787 - | intracellular growth attenuator IgaA TERM 216 230200 - 230187 - G 75 -3.7 -5.14563 | opp_overlap 230189, overlap 230189 CTGGTGATCAAAAAA CCGCC CGGA GGTGG GCTATTCAACGCTTC TERM 217 231382 - 231395 + g 71 -3.8 -4.68593 | GTTCGCTATCTTCTT TGCG AATAGA CGCA TTTTTCGATACTGAA YPK_0179 232214 - 232408 + | hypothetical protein TERM 218 232825 - 232835 + G 73 -8.2 -3.89617 | AAGAAGTTGGATATG GCGC TGA GCGC TTTGACTTTCTCGCT YPK_0180 232521 - 233066 + | NUDIX hydrolase YPK_0181 233942 - 233187 - | D12 class N6 adenine-specific DNA methyltransferase TERM 219 233511 - 233521 + g 71 -6.8 -4.15044 | TAGCCTCAGGTGTGC CGCT GAT AGCG TTTCTTCAAGGCGCA TERM 220 234027 - 234054 + r 74 -10 -3.18912 | opp_overlap 234034, overlap 234034 AGTGGGGTTGGGTAC TAAAAAAGCCGC ATAT GCAGCTTTTTTA TTACTAGGTCGATAA TERM 221 234047 - 234034 - R 85 -5.9 -5.14563 | opp_overlap 234027 234034 TTGGGTACTAAAAAA GCCGC ATAT GCAGC TTTTTTATTACTAGG TERM 222 234034 - 234047 + r 84 -3.7 -5.5112 | opp_overlap 234034, overlap 234027 TTGGGTACTAAAAAA GCCGC ATAT GCAGC TTTTTTATTACTAGG YPK_0182 234511 - 234074 - | hypothetical protein YPK_0183 235747 - 234521 - | tail fiber repeat 2-containing protein YPK_0184 236319 - 235750 - | hypothetical protein YPK_0185 237377 - 236316 - | baseplate J family protein YPK_0186 237721 - 237377 - | hypothetical protein TERM 223 237755 - 237718 - G 84 -13.5 -2.73542 | gap 1 TTGAAGGGTCAATTA GCATG-TCCATGCCGCCA CTA TGGCGGCATGGAGCAAGA AAATTCAGGTGAAGA YPK_0187 238432 - 237782 - | phage baseplate assembly protein V TERM 224 238442 - 238453 + r 78 -2.2 -5.48028 | CCACATCGACGATCC CCAG CGCT TTGG TTTTCTTTTTCTTTC YPK_0188 239645 - 238422 - | putative phage tail protein TERM 225 239357 - 239326 - G 83 -13 -3.08813 | gap 1, overlap 239342 239348 CGGGAGGTGAAGATA GGCGCGGCACAATCC ACC AGAATG-GCCGCGCC ATCACGACCAGATAA YPK_0189 240948 - 239629 - | DNA circulation family protein YPK_0190 243157 - 240950 - | hypothetical protein TERM 226 243034 - 243046 + g 73 -7.7 -4.0896 | TCTGGGATTTGCCAA GCTGA TTG TCAGC TTTTGCGACAGATTT YPK_0191 243291 - 243157 - | hypothetical protein YPK_0192 243479 - 243312 - | hypothetical protein TERM 227 243515 - 243490 - R 80 -9.7 -3.70149 | CTCATATCACCTAAA GCCGTTAGCGC ACTG GCGATAACAGC GATACGATAATAGGT YPK_0193 243792 - 243595 - | hypothetical protein YPK_0194 244285 - 243785 - | hypothetical protein TERM 228 244220 - 244190 - G 71 -6.7 -4.15044 | opp_overlap 244195 GCGGGCGGTAACAAA GGGGATTGCCGCC TGAGC GGCGGCGATTTCC AGTGACATCTGGCCG TERM 229 244195 - 244215 + g 77 -10.4 -3.60805 | opp_overlap 244190 CGGTAACAAAGGGGA TTGCCGCC TGAGC GGCGGCGA TTTCCAGTGACATCT YPK_0195 244575 - 244288 - | hypothetical protein TERM 230 244544 - 244557 + g 75 -5.9 -4.652 | opp_overlap 244544 TTGACGGCATTAACA CGTCG ACTC CGGCG TTTTTGGCGTGGTTT YPK_0196 244814 - 244572 - | hypothetical protein TERM 231 244683 - 244693 + g 81 -3.2 -5.38549 | GGCATCTTCACGCCG CTGA TAA TCGG TTTTTATTGTTTCAA YPK_0197 245398 - 244811 - | hypothetical protein YPK_0198 245630 - 245376 - | hypothetical protein YPK_0199 246259 - 245621 - | putative endolysin TERM 232 246255 - 246291 + g 73 -9.6 -3.38361 | gap 1, opp_overlap 246264, overlap 246258 246259 TGTGATAGGGAGATT TGCATGACACCATCCAA GGGT TGGGATGGTGTCA-GTA TTGCTATTAGGGTTT TERM 233 246258 - 246289 + g 73 -10.2 -3.25341 | opp_overlap 246264, overlap 246255 246259 GATAGGGAGATTTGC ATGACACCATCCAA GGGT TGGGATGGTGTCAG TATTGCTATTAGGGT TERM 234 246259 - 246288 + g 84 -13.7 -2.54723 | opp_overlap 246264, overlap 246258 246255 ATAGGGAGATTTGCA TGACACCATCCAA GGGT TGGGATGGTGTCA GTATTGCTATTAGGG YPK_0200 246620 - 246351 - | hypothetical protein YPK_0201 247069 - 246632 - | hypothetical protein YPK_0202 247467 - 247066 - | hypothetical protein YPK_0203 247925 - 247452 - | hypothetical protein TERM 235 247787 - 247771 - G 75 -7.9 -4.2123 | overlap 247772 CAGCCAGTCAATAAA TCAGCGG TGA CCGCTGG AGAGTAACCGCCCAA TERM 236 247786 - 247772 - G 79 -11.4 -3.12256 | overlap 247771 AGCCAGTCAATAAAT CAGCGG TGA CCGCTG GAGAGTAACCGCCCA YPK_0204 248310 - 247918 - | hypothetical protein YPK_0205 248512 - 248303 - | hypothetical protein YPK_0206 249054 - 248512 - | hypothetical protein YPK_0207 249286 - 249044 - | hypothetical protein YPK_0208 249504 - 249283 - | hypothetical protein YPK_0209 250001 - 249501 - | hypothetical protein YPK_0210 250699 - 250001 - | hypothetical protein TERM 237 250721 - 250752 + r 100 -15.2 -4.13304 | overlap 250751 GGTTTTCCATTATTT TGGCGTAAGCGCGC CCCT GCGGGTTTACGCCA TTTTAAAGATGATTT YPK_0211 250973 - 250782 - | hypothetical protein TERM 238 250949 - 250931 - G 71 -3.8 -4.82901 | overlap 250933 GTTGGTGGATAAAAA CCTTACCC ACG GGATAACG ACGGTTAAACTCTTC YPK_0212 251613 - 250975 - | hypothetical protein YPK_0213 251803 - 251603 - | hypothetical protein YPK_0214 252043 - 251810 - | hypothetical protein YPK_0215 252952 - 252062 - | XRE family transcriptional regulator TERM 239 252978 - 253006 + r 100 -9 -5.46657 | gap 1, opp_overlap 252975 252978 CTATGTAGTGAATGA GCGGC-ATTTGAT GGGC GTCAAATCGCCGC TTTTTTATTACCGTG YPK_0216 255049 - 252995 - | transposase TERM 240 254804 - 254827 + g 100 -9.7 -5.38951 | opp_overlap 254813 254814 CCTTGGGTTTAAATC GCCGTTAAA TGCCGT TTTAACGGC TTTTTTCTCTGCATT YPK_0217 255296 - 255051 - | putative transcriptional regulator, Nlp TERM 241 255805 - 255842 + G 71 -6.4 -4.1711 | gap 1, overlap 255796 255802 ACTAGCGCTTGGCTA GCC-GTGCTTGATTCTC TTGAT GAAAATGAAGCACAGGC TTTATTAAGGGTAAT YPK_0218 255478 - 256041 + | hypothetical protein TERM 242 256037 - 256065 + T 100 -8.3 -5.17054 | CACAGAAGAAGGCTG GATGATTGTATTA TGG TAACGCAATCATC TTTTTTAAATGTTGT TERM 243 256318 - 256366 + T 100 -13.6 -5.00616 | gap 1, opp_overlap 256329, overlap 256329 TTTTTATACGAGTAA TTTAT-AAAAAAGCCAGATGATC ATCA GATCATCTGGCTTTTTAGATAAG TTTTTTACACCAGGC TERM 244 256329 - 256354 + T 100 -16.3 -4.69027 | opp_overlap 256329, overlap 256318 GTAATTTATAAAAAA GCCAGATGATC ATCA GATCATCTGGC TTTTTAGATAAGTTT TERM 245 256354 - 256329 - T 100 -16.3 -5.31456 | opp_overlap 256318 256329 GTAATTTATAAAAAA GCCAGATGATC ATCA GATCATCTGGC TTTTTAGATAAGTTT YPK_0219 258942 - 256387 - | 1A family penicillin-binding protein TERM 246 257738 - 257751 + g 70 -2.3 -5.00616 | overlap 257734 257732 257739 TGCTGACCAGGCTGA ACGAC ATCA GTCGC TTTTTTGGGGACCGG TERM 247 259498 - 259516 + G 73 -8.8 -3.96327 | TGCAGCAATGGCAAG CCTGCTTG GAA CAGGCGGG TTTATCCTCACAAGT TERM 248 259542 - 259552 + G 73 -8.2 -3.83323 | CAAGTGATTGATATT GCGC CAT GCGC TTTACGTTATATGGC TERM 249 259835 - 259846 + G 71 -7.2 -4.10657 | CACACGGTCTTGGTC GCCG CTAA CGGC TTTTGCGCACTATCA YPK_0220 259062 - 259958 + | hypothetical protein YPK_0221 259958 - 260563 + | fimbrial assembly family protein YPK_0222 260511 - 261137 + | membrane protein YPK_0223 261103 - 261531 + | membrane protein TERM 250 262943 - 262927 - g 71 -8.7 -3.62418 | ACAAGTTACTGTAAA CGATGGC GAA ACCATCG TGCTGGGCGGGATTT YPK_0224 261722 - 263104 + | type IV pilus secretin PilQ YPK_0225 263453 - 263974 + | shikimate kinase YPK_0226 264031 - 265119 + | 3-dehydroquinate synthase YPK_0227 265373 - 266362 + | sporulation domain-containing protein TERM 251 266528 - 266490 - g 75 -10.2 -3.34398 | opp_overlap 266517, overlap 266488 266491 GGCTGGTGGGAAATA TCCGCTGGTTGATGACAT ACG ACGCCATCTTCCAGCGGG AGATTGTTTGATAGA TERM 252 266527 - 266491 - g 84 -13.7 -2.60496 | opp_overlap 266517, overlap 266490 266488 GCTGGTGGGAAATAT CCGCTGGTTGATGACAT ACG ACGCCATCTTCCAGCGG GAGATTGTTTGATAG TERM 253 266799 - 266822 + G 74 -9 -3.69094 | TCTCAATCGCCACTG TTATAACGGC CTGT GTCGTTATAA TTTGAGTGGTGAATT TERM 254 266886 - 266866 - g 80 -3.9 -5.24129 | GGTCGCTACAAAAAA CCCTACTTC CCA GAAGCGGAG TTATATTGGTTTGCT TERM 255 266908 - 266920 + G 87 -5.5 -5.38054 | opp_overlap 266908 266909, overlap 266902 266909 TGGTTTGCTGAAAAA TCGCA AAA TGCGG TTTTTGTTTGTGAGC YPK_0228 266446 - 267261 + | DNA adenine methylase YPK_0229 267564 - 268241 + | ribulose-phosphate 3-epimerase TERM 256 268447 - 268473 + G 70 -8 -3.79882 | overlap 268426 CGTGAACATAATGCT CAGCTTGTGG CACAGAC CCGCGAGCTG TTTGATCACTATTAT YPK_0230 268234 - 268932 + | phosphoglycolate phosphatase YPK_0231 268934 - 269974 + | tryptophanyl-tRNA synthetase TERM 257 269996 - 270017 + T 100 -14.5 -3.16742 | CAACGCATCAGTATG TGAGGGGGA AATT TCCCCCTCA TTAATCAGCATTAAC YPK_0232 271513 - 270092 - | uroporphyrin-III C-methyltransferase YPK_0233 272382 - 271576 - | formate/nitrite transporter YPK_0234 272903 - 272577 - | nitrite reductase (NAD(P)H), small subunit YPK_0235 275446 - 272900 - | nitrite reductase (NAD(P)H), large subunit TERM 258 273310 - 273298 - G 71 -10.5 -2.83403 | opp_overlap 273298, overlap 273297 CGGCTGCCAGTAAAT CCGCG TGA CGCGG TTTCATGCCGCCGTT TERM 259 273298 - 273310 + g 79 -10.5 -3.73072 | opp_overlap 273298 273297 CGGCTGCCAGTAAAT CCGCG TGA CGCGG TTTCATGCCGCCGTT TERM 260 275415 - 275430 + g 95 -7.6 -5.50723 | TGGCCGACCATGCCG TTGCCA ATGA TGGCAA TTTTTATTTTGCTCA YPK_0236 275593 - 275480 - | hypothetical protein TERM 261 275940 - 275953 + G 75 -8.1 -4.15222 | ATGCGCAGGGCGGTT TGGCG CTCC CGCCA TTTATTGAGCCGCAT TERM 262 276324 - 276339 + G 90 -10.4 -4.35524 | TGGGTGCGGATGCGG TGGGGG CGAT CCCCCA TTTTGAATTTACCCG YPK_0237 275768 - 277066 + | N-isopropylammelide isopropylaminohydrolase TERM 263 277136 - 277108 - T 78 -10.2 -3.2827 | overlap 277110 TTAGTGAATCATCAA TACCCTGCCACC TTGGC GGCGGCAGGGCG GTAACGCAGATAAAT TERM 264 277134 - 277110 - T 100 -15 -3.20494 | overlap 277108 AGTGAATCATCAATA CCCTGCCACC TTGGC GGCGGCAGGG CGGTAACGCAGATAA YPK_0238 278335 - 277151 - | major facilitator transporter YPK_0239 278821 - 280866 + | TonB-dependent copper receptor TERM 265 280914 - 280891 - T 100 -12.4 -3.40899 | opp_overlap 280891 AATGCGCTAGCAGAA CGTGGCAGGC CATG GCTTGCCACG TTAATAACAATTAAT TERM 266 280891 - 280914 + T 100 -14.6 -3.16921 | opp_overlap 280891 AATGCGCTAGCAGAA CGTGGCAGGC CATG GCTTGCCACG TTAATAACAATTAAT YPK_0240 281949 - 280963 - | LacI family transcription regulator TERM 267 281625 - 281640 + g 73 -7.6 -4.10179 | AGTTATACAGCCGCT GAATGG CTAA CCATTC TTTATCTGCATTATC TERM 268 281754 - 281734 - G 76 -2.4 -5.18357 | overlap 281735 TAAGGCACCAAAAAA GCCCCCTC GGTAT GAGGTGGT CACCAACCCCAGCGT YPK_0241 283491 - 282178 - | glycoside hydrolase family protein TERM 269 283517 - 283507 - H 71 -8.2 -3.53811 | TGTAGGGGCTCCAAA CGGC TCT GCCG GCGATAAAGTTCAGT TERM 270 283581 - 283613 + H 86 -12.2 -3.00498 | gap 1, opp_overlap 283580 283579 283583, overlap 283583 283585 ATCTGTGGATAAATT CAGGCTCACCATGAT TTTC ATCA-GGTGAGTCTG TCTCTGTACGGTCTC TERM 271 283698 - 283685 - H 84 -5.3 -5.35224 | opp_overlap 283685 TGCAGAAAAACAAAA TGAGA GCGC TCTCA TTTGAAGCAGATTAG TERM 272 283788 - 283820 + H 81 -11.3 -2.8194 | opp_overlap 283784, overlap 283780 AGTAAGAGAATCGTG ATCCAGACTCCAGAA TCT TGCTGGAGTCTGGGA TGTGGTGACTCATTA YPK_0242 284007 - 284576 + | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 273 285962 - 285921 - g 71 -6.4 -4.26903 | overlap 285931 GCCACGGGATCAAAA GGCGGTTAAAGCCGCAGC TCAGAC GATGCGGCCTAATCCGGC ATTCAGTGCTGAACA YPK_0243 284902 - 286443 + | putative NPT hydrolase YPK_0244 286686 - 287261 + | glutamine amidotransferase of anthranilate synthase TERM 274 287297 - 287314 + F 76 -2.7 -5.30686 | CCATGACATCATTTA TCATTTG CTTG CGGATGA TTTTTTATGCATATT YPK_0245 287394 - 288611 + | succinylornithine transaminase family protein TERM 275 288737 - 288711 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 288720, overlap 288712 288727 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 276 288738 - 288712 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 288720, overlap 288711 288727 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_0246 288750 - 288854 + | hypothetical protein YPK_0247 290957 - 288837 - | YccS/YhfK family integral membrane protein TERM 277 289120 - 289154 + g 74 -10.9 -2.7682 | gap 1, overlap 289119 CTCATGAGTGGATGA CCATTGGTTGATGGTG AGTC CACC-TCAGTCAATGG ATTCTCTCTGATCAG TERM 278 289395 - 289407 + g 73 -5.5 -4.56597 | opp_overlap 289388 CTGATAAGCCTCCAG TGCCT GAT GGGCA TTTTTACGCAACAAC TERM 279 290369 - 290381 + g 75 -5.5 -4.66833 | GTTGTCTATCGAGTA GCGGT GGT ATCGC TTTTTCGGGTTCAAG TERM 280 290999 - 291029 + r 100 -16.3 -4.57341 | gap 1, opp_overlap 290999 AGAAAACGGGAAAAA CCGGCGCTAATAGC TTCA GCT-TTAGCGCCGG TTTTTAGAGGGAATT TERM 281 291029 - 290999 - R 100 -16.3 -4.75063 | gap 1, opp_overlap 290999 AGAAAACGGGAAAAA CCGGCGCTAATAGC TTCA GCT-TTAGCGCCGG TTTTTAGAGGGAATT YPK_0248 291675 - 291043 - | Crp/FNR family transcriptional regulator YPK_0249 292011 - 292418 + | OsmC family protein TERM 282 292430 - 292453 + F 93 -8.9 -4.56775 | opp_overlap 292421 292420 292430 GTAAATGGTGAACCA CCCATAGCC CGGTTT GGTTATGGG TTTTTAGGCCAAAAT YPK_0250 292696 - 292833 + | hypothetical protein YPK_0251 292863 - 293342 + | Hcp1 family type VI secretion system effector TERM 283 293351 - 293380 + F 73 -2.9 -5.13137 | gap 1, overlap 293353 TTATTAGCTTTTTAA TAGAGTATGCTGCA AGT TTC-GCATGCTCTG TTTTTGGTTTCTTTA YPK_0252 293418 - 294290 + | hypothetical protein TERM 284 294315 - 294345 + GT 100 -8.3 -5.3167 | overlap 294308 AATATCGGTTGCCTG TGGGGCGATATCA TTGTT TGTTGTCGCCTCA TTTTCTTTGTTTTTC YPK_0253 294250 - 294681 + | hypothetical protein YPK_0254 295728 - 294859 - | phosphoribulokinase TERM 285 295043 - 295007 - G 73 -8.7 -3.90038 | overlap 295041 AGCAAATAAGGGAAA TCGATGTGATCCAAACC ACG GAAATGGATCACAACGA AACTTTCGTCTAACG TERM 286 295385 - 295353 - G 74 -4 -4.84311 | gap 1, overlap 295355 CTTCATAGAATAAAA CATCCGTGGGTTCCG GTAG CGGCTCCCAAGGA-G TAAAGGTGCCAGGGA TERM 287 295384 - 295355 - G 73 -7.7 -4.03793 | overlap 295353 TCATAGAATAAAACA TCCGTGGGTTCCG GTAG CGGCTCCCAAGGA GTAAAGGTGCCAGGG YPK_0255 296113 - 295877 - | hypothetical protein TERM 288 295984 - 295999 + g 77 -4.6 -4.99035 | opp_overlap 295979, overlap 295986 CACTGACCAACTGAC GGCGCA CGTC TGCGAC TTTTTCTGTCAGTGA YPK_0256 297090 - 296110 - | alpha/beta hydrolase fold TERM 289 296903 - 296879 - G 71 -5 -4.58283 | overlap 296881 TAAGGGCTGTAAAAA TTCCCTTCCA AACCG TGGAAGAGTA CCACTCGGGGCTTCT YPK_0257 297192 - 297794 + | lysine exporter protein LysE/YggA TERM 290 297871 - 297909 + F 83 -12.1 -2.74597 | opp_overlap 297878, overlap 297874 297878 297879 AGTACATCTGTTATC GCATAAAGGAATAAA CAATATTCT TTTATTCCTTTATGC TGCTCTCTCTCTCGG YPK_0258 297997 - 299058 + | taurine ABC transporter, periplasmic binding protein TERM 291 299396 - 299376 - g 78 -9 -4.0274 | gap 1 GGGATGAGTAAAGAA CAGCGGCGG GTAA CCGCC-CTG AAAATGCTAAACCGG YPK_0259 299067 - 299834 + | ABC transporter related TERM 292 300399 - 300413 + G 80 -7 -4.64846 | overlap 300397 CCCGTGCATTAGGTG CCAGCC GTT GGCAGG TTTTATGGTTTGTGG YPK_0260 299831 - 300685 + | binding-protein-dependent transport systems inner membrane component YPK_0261 300682 - 301530 + | taurine dioxygenase YPK_0262 302523 - 301543 - | glycosyl transferase family protein YPK_0263 303641 - 302616 - | glycosyl transferase family protein TERM 293 303691 - 303724 + r 73 -9.7 -3.04263 | opp_overlap 303681 303684, overlap 303693 AAAATCACGCCGCTC TAGTCGTGCGACT CTAACTCA ATTCGCACGACTA TATTCACGATGCCAT YPK_0264 305698 - 303776 - | ABC transporter related TERM 294 304014 - 304026 + g 74 -9.1 -3.65199 | opp_overlap 304007 304006 GTCATAATCTGCTTA CGCAG TGG CTGCG TTTGAGTGCGGAATT TERM 295 305368 - 305384 + g 100 -6.5 -5.63103 | overlap 305369 TACCGTGCACGGTTG CGATGGC ATG GCCATCA TTTTTTTCATTGGCA TERM 296 305369 - 305383 + g 81 -10 -3.96777 | overlap 305368 ACCGTGCACGGTTGC GATGGC ATG GCCATC ATTTTTTTCATTGGC YPK_0265 305949 - 306497 + | NAD(P)H dehydrogenase (quinone) YPK_0266 306501 - 308309 + | potassium efflux system protein YPK_0267 308325 - 308546 + | hypothetical protein TERM 297 308667 - 308656 - g 74 -4.4 -4.85545 | ATGAAAGTAACAAAA GACT TGGT AGTC AGCCTGGCTTACCAG YPK_0268 308641 - 309222 + | peptidylprolyl isomerase FKBP-type TERM 298 309238 - 309270 + T 100 -16.5 -2.87931 | opp_overlap 309225 309245, overlap 309245 TATCTGACCCCGTCA GCAAAAAGCCAGC CTTCATC GCTGGCTTTTTGC TCTGTACGCGATCAC TERM 299 309245 - 309263 + T 85 -7.4 -4.84527 | opp_overlap 309245, overlap 309238 CCCCGTCAGCAAAAA GCCAGC CTTCATC GCTGGC TTTTTGCTCTGTACG TERM 300 309263 - 309245 - T 81 -7.4 -4.72272 | opp_overlap 309238 309245 CCCCGTCAGCAAAAA GCCAGC CTTCATC GCTGGC TTTTTGCTCTGTACG YPK_0269 309641 - 309423 - | SlyX family protein TERM 301 310594 - 310580 - g 80 -2.8 -5.41359 | opp_overlap 310580, overlap 310582 AAGCAAATCAAAAAA GGTG GCAAAAT CACC TTGGTTATCCCGCCA YPK_0270 309956 - 310756 + | peptidylprolyl isomerase TERM 302 310787 - 310810 + F 100 -9.6 -6.22802 | opp_overlap 310787 ACACTCTTCTCATAA CCGTTACGAT AATT GTCGTGACGG TTTTTTTTTGTGCGC YPK_0271 311010 - 311732 + | YheO domain-containing protein YPK_0272 311732 - 312127 + | sulfur relay protein TusD/DsrE TERM 303 312310 - 312299 - g 77 -3 -5.30686 | overlap 312288 AACAGCCAGAAAAAA TTCT TGCC AGAA ACTATATTGCTACTT YPK_0273 312127 - 312492 + | sulfur relay protein TusC/DsrF YPK_0274 312512 - 312799 + | sulfur relay protein TusB/DsrH YPK_0275 312937 - 313311 + | ribosomal protein S12 YPK_0276 313408 - 313878 + | ribosomal protein S7 YPK_0277 313972 - 316080 + | translation elongation factor G TERM 304 316136 - 316103 - f 77 -10.3 -3.10579 | overlap 316100 GGTTTAAAACAATGA TCCAGTGCTCTCTCA TTAG TGGGAGAGCACAAGA GTAAGGAATATAGTC YPK_0278 316152 - 317336 + | translation elongation factor Tu TERM 305 317371 - 317386 + F 100 -10.4 -5.55769 | opp_overlap 317371 ATTGATCAAACCAAA GGGTGC CTCG GCACCC TTTTTTATTGTGCCC TERM 306 317386 - 317371 - f 91 -10.4 -4.10953 | opp_overlap 317371 ATTGATCAAACCAAA GGGTGC CTCG GCACCC TTTTTTATTGTGCCC TERM 307 317408 - 317426 + F 100 -16 -3.07307 | opp_overlap 317408 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 308 317426 - 317408 - f 100 -16 -4.37092 | opp_overlap 317408 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_0279 317539 - 317997 + | transposase IS200-family protein TERM 309 318075 - 318099 + F 93 -9.9 -4.25056 | opp_overlap 318078, overlap 318077 318078 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGATAAAGTG TERM 310 318077 - 318097 + F 100 -12.5 -3.72374 | opp_overlap 318078, overlap 318075 318078 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGATAAAG TERM 311 318096 - 318078 - f 100 -16 -4.8048 | opp_overlap 318077 318075 318078 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGATAAA TERM 312 318078 - 318096 + F 100 -16 -2.82942 | opp_overlap 318078, overlap 318077 318075 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGATAAA YPK_0280 318185 - 318379 + | BFD/(2Fe-2S)-binding domain-containing protein YPK_0281 318458 - 318931 + | bacterioferritin YPK_0282 319345 - 319656 + | ribosomal protein S10 YPK_0283 319689 - 320318 + | ribosomal protein L3 TERM 313 320367 - 320355 - g 77 -10.5 -3.54414 | opp_overlap 320349, overlap 320353 ATTGGTAATGAAAGA CGCGC CAG GCGCG CTGACTGTTTCCGAA YPK_0284 320335 - 320940 + | ribosomal protein L4/L1e TERM 314 321221 - 321201 - g 74 -9.7 -3.57462 | opp_overlap 321204, overlap 321204 TACGTCACCCTGAAA GAAGGCCAG AAT CTGGACTTC ATCGGCGGCGCAGAG YPK_0285 320937 - 321239 + | ribosomal protein L25/L23 YPK_0286 321256 - 322080 + | ribosomal protein L2 YPK_0287 322095 - 322373 + | ribosomal protein S19 YPK_0288 322388 - 322720 + | ribosomal protein L22 TERM 315 322884 - 322852 - g 74 -10 -3.61654 | overlap 322853 GACAGCGACTTTAAA GTTCGCCAATTCCT GACTA AGGAATTAGCGAAA GCTTCCGTTTCTCGC TERM 316 322883 - 322853 - g 85 -13.5 -2.76671 | overlap 322852 ACAGCGACTTTAAAG TTCGCCAATTCCT GACTA AGGAATTAGCGAA AGCTTCCGTTTCTCG YPK_0289 322738 - 323436 + | ribosomal protein S3 YPK_0290 323449 - 323859 + | ribosomal protein L16 YPK_0291 323859 - 324050 + | ribosomal protein L29 YPK_0292 324050 - 324304 + | ribosomal protein S17 TERM 317 324354 - 324328 - f 70 -8 -3.69069 | opp_overlap 324328, overlap 324331 CCAACTCGAACATAA TAAGCGGCTC TGAAAAT GGGCCGCTTA TTTTTTCTACCCACT TERM 318 324328 - 324354 + F 100 -10.2 -5.24531 | opp_overlap 324328 324331 CCAACTCGAACATAA TAAGCGGCTC TGAAAAT GGGCCGCTTA TTTTTTCTACCCACT YPK_0293 324485 - 324856 + | ribosomal protein L14 YPK_0294 324867 - 325181 + | ribosomal protein L24 TERM 319 325358 - 325340 - g 73 -7.4 -4.30987 | opp_overlap 325339, overlap 325326 ATCGCTGACAAGAAA CTGCTGGA TAA TGCAGCAG CTGACTTGGCAGCAA YPK_0295 325196 - 325735 + | ribosomal protein L5 TERM 320 325791 - 325770 - g 76 -8.7 -4.02021 | overlap 325771 325773 AAGCAATCAATGAAA GCACGCGAA GTTG TTCGCGTGA AACTAGCTAACAAAT TERM 321 325790 - 325771 - g 81 -12.2 -3.00128 | overlap 325770 325773 AGCAATCAATGAAAG CACGCGAA GTTG TTCGCGTG AAACTAGCTAACAAA YPK_0296 325749 - 326054 + | ribosomal protein S14 YPK_0297 326088 - 326480 + | ribosomal protein S8 YPK_0298 326495 - 327028 + | ribosomal protein L6 YPK_0299 327038 - 327391 + | ribosomal protein L18 TERM 322 327612 - 327592 - g 73 -4.6 -4.67353 | opp_overlap 327604, overlap 327604 GCAGCGATCCAAAAA GCGATGGA AAAAG CCCGTCGC GCTATGATTAACGTT YPK_0300 327406 - 327909 + | ribosomal protein S5 YPK_0301 327912 - 328091 + | ribosomal protein L30 YPK_0302 328095 - 328529 + | ribosomal protein L15 TERM 323 328971 - 329000 + G 78 -7.9 -4.45168 | overlap 328963 GAATATGCCTGGGAT GCAAGGTCTGG TAATCAAT CCAGGCTTTGC TTTCTATTTTACCGC YPK_0303 328537 - 329868 + | preprotein translocase, SecY subunit YPK_0304 329902 - 330018 + | ribosomal protein L36 TERM 324 330049 - 330078 + F 100 -12.3 -4.61868 | gap 1 TTTCTTGCAAAGTTG GGTTGAGCTGGCTA GAT TAGCCAGC-CAATC TTTTGTATGTGACTG YPK_0305 330166 - 330522 + | ribosomal protein S13 YPK_0306 330539 - 330928 + | ribosomal protein S11 TERM 325 330918 - 330934 + F 82 -7.9 -4.42851 | opp_overlap 330917 330918 GTCCGCCGAAAAAGC GCCGCGT ATA ACGCTGC TTTTAGGTTTGTTGG YPK_0307 330959 - 331579 + | ribosomal protein S4 TERM 326 331564 - 331582 + F 77 -10.4 -3.14132 | ACACCTGATCGTCGA GCTTTACT CCA AGTAAAGC TTAGTACCAAAGAGA TERM 327 332511 - 332499 - g 75 -3.4 -5.01732 | AACCTGGGTAAAAAA TCTC TTACT GAGA TTAAAGACGTGCTCG YPK_0308 331605 - 332594 + | DNA-directed RNA polymerase, alpha subunit TERM 328 332684 - 332712 + G 77 -10.4 -3.57246 | gap 1, overlap 332680 332682 GTAACAGCAGCCATC GCCAGGCTATGTT CCGT AACATGGCC-GGC TCTTTGGTTCGTCAT TERM 329 332906 - 332880 - g 75 -11.4 -2.73123 | opp_overlap 332877 332905 AAAACTGTTTAACGA GCTAGGCCCGCG TTT CGCGAGCCGCGC CGGTGGTTACACTCG YPK_0309 332635 - 333024 + | ribosomal protein L17 TERM 330 333070 - 333033 - f 100 -20.1 -3.62032 | opp_overlap 333045, overlap 333034 333045 AGAGTAATCTGTAAA CGCGTAAAAAAACCGGG CTTG CCCGGTTTTTTTACGCC CACCATATACAGCTT TERM 331 333069 - 333034 - f 100 -23.6 -2.76737 | opp_overlap 333045, overlap 333033 333045 GAGTAATCTGTAAAC GCGTAAAAAAACCGGG CTTG CCCGGTTTTTTTACGC CCACCATATACAGCT TERM 332 333045 - 333058 + F 100 -9.5 -5.40072 | opp_overlap 333034 333033 333045 AAACGCGTAAAAAAA CCGGG CTTG CCCGG TTTTTTTACGCCCAC TERM 333 333058 - 333045 - f 100 -9.5 -5.4477 | opp_overlap 333045, overlap 333034 333033 AAACGCGTAAAAAAA CCGGG CTTG CCCGG TTTTTTTACGCCCAC YPK_0310 333471 - 333896 + | MerR family transcriptional regulator TERM 334 334136 - 334181 + G 100 -17.1 -2.90615 | opp_overlap 334133 334134, overlap 334139 AAAAGGTAGTAACTG GGAGGCCAGTGGTAAGCAATC AATA GATTTTTTACTACTGGCCTTC TGATTTAAAAGAAAT TERM 335 334139 - 334178 + G 100 -15.2 -3.60151 | opp_overlap 334133 334134, overlap 334136 AGGTAGTAACTGGGA GGCCAGTGGTAAGCAATC AATA GATTTTTTACTACTGGCC TTCTGATTTAAAAGA YPK_0311 333984 - 334184 + | hypothetical protein YPK_0312 334698 - 334294 - | large conductance mechanosensitive channel protein TERM 336 334471 - 334457 - G 73 -3.6 -4.95547 | GCTACAATAACAAAA TCAAAA ATG CTTTGA ATAAATGTACCATAA YPK_0313 336222 - 334846 - | TrkA domain-containing protein TERM 337 335227 - 335247 + g 77 -3.9 -5.00884 | ATCGACGTAAGCACT GCGTTGG ATAAGTA CCATCGC TTTTTTCGCACCCAT YPK_0314 337567 - 336278 - | sun protein TERM 338 336315 - 336335 + g 78 -5.3 -4.86731 | opp_overlap 336310 TAGAAGAAACCATCA CCGTCCTCA GGA TGTGGAAGG TTTTGTTTACCAGGC TERM 339 337593 - 337578 - R 89 -6.8 -5.32944 | TTCATAACCAAAAAA GCTGAC AAAC GCCAGC AAATAAAGGGAGAAG YPK_0315 338608 - 337661 - | methionyl-tRNA formyltransferase TERM 340 338129 - 338145 + g 78 -8.1 -4.37886 | ACTGGTATCTTCTGG TTGAATG GCA CATTCAA TTTTATGCAGCATAG TERM 341 338260 - 338232 - G 70 -9.5 -3.12351 | CCCGCCCATACTGAA CGTTGGATCGGTG CTG CACCACGCCAACG TGGGAGTAACGAACC TERM 342 338563 - 338539 - G 91 -15 -3.17622 | overlap 338543 TATGTTGAGAAGAGA GCAACGCGCC TAAAT GGCGCGCTGC AAAATCAGGAGTTCC TERM 343 338559 - 338543 - G 78 -10.8 -3.40191 | overlap 338539 TTGAGAAGAGAGCAA CGCGCC TAAAT GGCGCG CTGCAAAATCAGGAG YPK_0316 339145 - 338633 - | peptide deformylase TERM 344 339955 - 339977 + GH 72 -7.1 -3.91084 | gap 1, overlap 339958 GCTGTGTTAGTCGTT GAGGCCACTT TAAA AAGTGGC-TC TTTGATTACCGCTCG TERM 345 339958 - 339975 + GH 78 -9.9 -3.54414 | overlap 339955 GTGTTAGTCGTTGAG GCCACTT TAAA AAGTGGC TCTTTGATTACCGCT YPK_0317 339280 - 340401 + | DNA protecting protein DprA YPK_0318 340373 - 340846 + | hypothetical protein YPK_0319 340887 - 341426 + | DNA topoisomerase type IA Zn finger domain-containing protein TERM 346 341925 - 341942 + G 74 -9.1 -3.67792 | overlap 341909 ATTACCGGTGTTATC CGGTCAC GTTG GTGGCCG TTTGAATCCATCTGA YPK_0320 341428 - 342000 + | SUA5/yciO/yrdC domain-containing protein YPK_0321 342009 - 342830 + | shikimate 5-dehydrogenase YPK_0322 343427 - 342885 - | hexapaptide repeat-containing transferase TERM 347 343137 - 343151 + g 70 -7.8 -3.87075 | opp_overlap 343130, overlap 343130 GTTACCAATGGTACA GCCGTG TAG CATGGC TTTATGACCAATAGT YPK_0323 343731 - 343850 + | hypothetical protein TERM 348 343905 - 343884 - f 95 -11.7 -3.90082 | opp_overlap 343883 343880, overlap 343904 GACCAAAGCAGTAAA CATCTTGAC TTCG GTCAAGATG CATATTTGCAGAAAG TERM 349 347338 - 347320 - f 82 -10.3 -3.57798 | overlap 347333 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 350 347798 - 347772 - f 70 -9.4 -2.75844 | opp_overlap 347786 347794, overlap 347771 347774 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 351 347845 - 347834 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 352 348957 - 348967 + F 74 -6.8 -4.27316 | opp_overlap 348957 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 353 349197 - 349215 + F 95 -8.1 -5.21709 | opp_overlap 349197 349189 AAATAAAGCCAAGAC CCCATGC CCAAA GCGTGGG TTTTTTGCTGTGCGC YPK_0326 349642 - 350679 + | UDP-N-acetylenolpyruvoylglucosamine reductase YPK_0327 350676 - 351635 + | bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase TERM 354 351662 - 351645 - T 71 -9.9 -2.63723 | opp_overlap 351642 351640 351637, overlap 351644 GTCTGATTAATTAAT GGGAGAT AACT ATCTCCC GTATAGATTATTTTC YPK_0328 352620 - 351670 - | pantothenate kinase TERM 355 352171 - 352185 + g 100 -8.6 -5.5604 | opp_overlap 352171 ATTATGCATATCATA GGATTC CGG GAATCC TTTTTTCTTCATTAG TERM 356 352490 - 352514 + g 75 -5.7 -4.55093 | TCTAATGAAAGGTCT TCGTTAATCCC TTT GAGTTTAACGA TTTCTTCTTCTGTCA TERM 357 352684 - 352710 + r 91 -8 -4.8048 | opp_overlap 352685, overlap 352685 AACTCCAGATAAGAA ACAAGCTGCATA TTA TAGGCAGCTTGG TTTTTGGTGTAGACA TERM 358 352685 - 352709 + r 89 -11.5 -3.47806 | opp_overlap 352685, overlap 352684 ACTCCAGATAAGAAA CAAGCTGCATA TTA TAGGCAGCTTG GTTTTTGGTGTAGAC TERM 359 352709 - 352685 - R 100 -11.5 -4.39329 | opp_overlap 352684 352685 ACTCCAGATAAGAAA CAAGCTGCATA TTA TAGGCAGCTTG GTTTTTGGTGTAGAC YPK_0329 353382 - 352831 - | GCN5-related N-acetyltransferase YPK_0330 353740 - 353606 - | hypothetical protein YPK_0332 354371 - 355555 + | translation elongation factor Tu TERM 360 355580 - 355597 + F 100 -11.3 -4.91712 | opp_overlap 355580 CGACATGCGATAAAA GGGCATC ATTT GATGCCC TTTTTATACGTTGCA TERM 361 355597 - 355580 - f 100 -11.3 -4.41548 | opp_overlap 355580 CGACATGCGATAAAA GGGCATC ATTT GATGCCC TTTTTATACGTTGCA TERM 362 355747 - 355771 + F 79 -7.9 -4.28115 | overlap 355748 355767 GCATCCTTCGGCTTG GTTTGCTTTGC GAT GCGAAGCAAAG TTGTTTGTTCTGAAT TERM 363 355748 - 355770 + F 84 -11.4 -3.15784 | overlap 355747 355767 CATCCTTCGGCTTGG TTTGCTTTGC GAT GCGAAGCAAA GTTGTTTGTTCTGAA TERM 364 356122 - 356165 + G 71 -6.8 -4.25056 | gap 1, overlap 356131 CTGCTGTAATGTCAC TGATTCTATGGGGACT-GGAT GGT ATCCTAGTCCGCTTGGTATCA TTTATTACTGGCCTG YPK_0333 355806 - 356189 + | preprotein translocase, SecE subunit YPK_0334 356191 - 356736 + | NusG antitermination factor TERM 365 356777 - 356805 + F 100 -16.2 -5.2853 | TTGAGTCTTGTCTTA GGCGCGAAATTA AAATA TAATTTCGCGCC TTTTGTTTTTAGATG YPK_0335 356927 - 357355 + | ribosomal protein L11 YPK_0336 357359 - 358063 + | ribosomal protein L1 TERM 366 358086 - 358127 + F 77 -10.4 -3.16553 | gap 1, overlap 358083 358084 358087 358090 TTGCTTTTATCGCTT TA-CGTGGGCGTAAGGTTT GTCTA GAATCTTACGCCCATGCTA TCTGTTGATCGTTGT TERM 367 358087 - 358125 + F 79 -11.1 -3.13565 | overlap 358083 358086 358084 358090 TGCTTTTATCGCTTT ACGTGGGCGTAAGGTTT GTCTA GAATCTTACGCCCATGC TATCTGTTGATCGTT TERM 368 358090 - 358122 + F 93 -13.6 -2.76689 | overlap 358083 358087 358086 358084 TTTTATCGCTTTACG TGGGCGTAAGGTTT GTCTA GAATCTTACGCCCA TGCTATCTGTTGATC TERM 369 358266 - 358276 + F 71 -4 -4.88895 | opp_overlap 358266 358271 GTGACAGAACCTAAA GAAA ATT TTTC TTTCTTTATTTGTTT TERM 370 358306 - 358271 - f 73 -3.5 -4.94962 | opp_overlap 358266, overlap 358266 AGAACCTAAAGAAAA TTTTTCTTTCTTTAT TTGTTT ATAAAGAATGATAAA GAATAGTCTTTGCTG TERM 371 358350 - 358371 + F 71 -9.5 -3.06915 | GTGTTTCAACGCTCG TTCACGGCA ATTT TGTCGTGAA TTGGGTGACGTGAGT TERM 372 358388 - 358406 + F 95 -13.2 -3.14132 | TGGGTGACGTGAGTT CCGGAGAA TTA TTCTCCGG TTAATCCAGGAGCAA YPK_0337 358428 - 358925 + | ribosomal protein L10 YPK_0338 358992 - 359360 + | ribosomal protein L7/L12 TERM 373 359400 - 359425 + T 100 -14.1 -4.64766 | ACTTTATAGGCTGAT GGCTGGTGACT TTTT AGTCATCAGCC TTTTTGCGCTGTAGG YPK_0339 359643 - 359506 - | hypothetical protein TERM 374 360357 - 360371 + G 73 -8.6 -3.9122 | opp_overlap 360344 AATTTCACCACTGCA CAGATC TTG GATCTG TTCTTTGAGAAAGTG TERM 375 362745 - 362729 - g 100 -10.9 -4.56314 | CGAAGACAAGCAAAA CCAACTG GAA CAGTTGG CAGAGCAGTACGACG TERM 376 363633 - 363623 - g 78 -5.4 -4.91459 | overlap 363611 CAAGATGTACAAAAA CATC GTG GATG GCGATCACCGTATGG YPK_0340 359703 - 363731 + | DNA-directed RNA polymerase, beta subunit TERM 377 365672 - 365657 - g 71 -2.6 -5.00616 | gap 1 CCGCTGGGTAAAAAA GCTATCT CTA AGAT-GC TGAACACTTGTTACC YPK_0341 363860 - 368080 + | DNA-directed RNA polymerase, beta' subunit TERM 378 368132 - 368100 - T 74 -10.1 -3.21099 | gap 1, opp_overlap 368105 368106, overlap 368106 TTTGCCTACTACCAA CAAAAA-CCGCATC TTTCGG GATGCGGGTTTTTG AGAGACGAACGGCCC TERM 379 368105 - 368126 + T 74 -6.5 -4.56597 | opp_overlap 368100 368106, overlap 368106 CTACTACCAACAAAA ACCGCATCT TTCG GGATGCGGG TTTTTGAGAGACGAA TERM 380 368106 - 368125 + T 76 -10 -3.33744 | opp_overlap 368100 368106, overlap 368105 TACTACCAACAAAAA CCGCATCT TTCG GGATGCGG GTTTTTGAGAGACGA TERM 381 368125 - 368106 - T 100 -9.3 -5.15167 | opp_overlap 368106 368105, overlap 368100 TACTACCAACAAAAA CCGCATC TTTCGG GATGCGG GTTTTTGAGAGACGA TERM 382 368159 - 368142 - T 76 -9.8 -3.32022 | opp_overlap 368142 TTTTTGAGAGACGAA CGGCCC CTTCTC GGGCCG TTTTTTTTTGTTTAT TERM 383 368142 - 368159 + T 100 -9.8 -6.5058 | opp_overlap 368142 TTTTTGAGAGACGAA CGGCCC CTTCTC GGGCCG TTTTTTTTTGTTTAT TERM 384 368349 - 368362 + T 70 -3.7 -4.74706 | opp_overlap 368350, overlap 368350 TAACTCACTGATATT ACGCC TTCG GGCGG TTTTTCAATATTACG YPK_0342 369517 - 368387 - | thiazole biosynthesis protein ThiH TERM 385 368796 - 368786 - G 73 -3.2 -4.86731 | overlap 368790 TTGTTGCAAATAAAA CAGA TGC TCCG CCAGCATATAACAGT YPK_0343 370325 - 369510 - | thiazole biosynthesis family protein YPK_0344 370542 - 370327 - | thiamine biosynthesis protein ThiS YPK_0345 371336 - 370539 - | UBA/THIF-type NAD/FAD binding protein TERM 386 370840 - 370853 + g 73 -4.5 -4.82901 | overlap 370832 AACCCTACAGCACTG CCGCT GATT AGTGG TTTTTGTGCCGCGAC YPK_0346 372000 - 371326 - | thiamine-phosphate pyrophosphorylase TERM 387 371557 - 371531 - G 74 -10 -3.55563 | opp_overlap 371531 371530 371549, overlap 371533 ACCTGACGGCTTAAA GACGCCAACCCC TGT GGGGATGACGGC ATCTGTTTGGTCTGA TERM 388 371555 - 371533 - G 78 -11.2 -3.35597 | opp_overlap 371531 371530 371549, overlap 371531 CTGACGGCTTAAAGA CGCCAACCCC TGT GGGGATGACG GCATCTGTTTGGTCT YPK_0347 374032 - 371987 - | thiamine biosynthesis protein ThiC YPK_0348 374916 - 374407 - | regulator of RpoD, Rsd/AlgQ YPK_0349 375013 - 375795 + | NAD(+) diphosphatase YPK_0350 375888 - 376673 + | hypothetical protein TERM 389 376970 - 376988 + G 78 -11 -3.33492 | TAGCCTGTGAGGTCA CGATGCAG CCA CTGCGTCG TTATCCGCTGGATGC TERM 390 377664 - 377647 - g 79 -9.9 -3.85698 | CGTGTTGGTGATAAA GTTGCCT TGCA AGGCAAC ATGGATCCTTCGGTT YPK_0351 376792 - 377859 + | uroporphyrinogen decarboxylase TERM 391 378117 - 378133 + G 79 -10.9 -3.56959 | opp_overlap 378116, overlap 378120 CTGGTGGAATACCAG GTTGCCA GAG TGGCAAC TTCTCTGCCTTATAT YPK_0352 377889 - 378629 + | deoxyribonuclease V YPK_0353 378675 - 379265 + | hypothetical protein YPK_0354 379454 - 379729 + | histone family protein DNA-binding protein TERM 392 379757 - 379770 + F 78 -5.2 -4.99043 | AATAATAAGCAGGGG GGGG ATAAAA CCCC TTTTGTTTATGCGGC YPK_0355 379779 - 380432 + | hypothetical protein YPK_0356 381885 - 380599 - | phosphoribosylamine--glycine ligase TERM 393 380875 - 380843 - G 80 -12 -2.87003 | overlap 380838 380840 CCATGAATAACATCA CCCTGGCGGTAATC TGCTG GATAACCGCCAGCG GCTAAAACGACCCCC YPK_0357 383534 - 381945 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YPK_0358 383945 - 384064 + | hypothetical protein TERM 394 384119 - 384098 - T 95 -11.7 -3.90082 | opp_overlap 384097 384094, overlap 384118 GACCAAAGCAGTAAA CATCTTGAC TTCG GTCAAGATG CATATTTGCAGAAAG TERM 395 386035 - 385998 - T 78 -5.7 -4.7629 | opp_overlap 385998 385992 386001, overlap 386001 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 396 386032 - 386001 - T 78 -7.4 -4.47888 | opp_overlap 385998 385992 386001, overlap 385998 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 397 387491 - 387473 - T 82 -10.3 -3.57798 | overlap 387486 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 398 387951 - 387925 - T 70 -9.4 -2.75844 | opp_overlap 387939 387947, overlap 387924 387927 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 399 387998 - 387987 - T 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 400 389110 - 389120 + T 74 -6.8 -4.27316 | opp_overlap 389110 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 401 389593 - 389625 + T 100 -13.6 -4.62783 | gap 1, opp_overlap 389593 389599, overlap 389599 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 402 389625 - 389593 - T 100 -11.4 -4.50627 | gap 1, opp_overlap 389593 389599, overlap 389599 CAGGTATCAAATAAA CAGAAA-GGCCATCC ATTA GGGTGGCCTTTTCTG TTTTTGCGATCCGTC TERM 403 389618 - 389599 - T 95 -9.2 -4.50993 | opp_overlap 389599 389593, overlap 389593 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG TERM 404 389599 - 389618 + T 100 -11.4 -4.98672 | opp_overlap 389593 389599, overlap 389593 TCAAATAAACAGAAA GGCCATCC ATTA GGGTGGCC TTTTCTGTTTTTGCG YPK_0362 390254 - 389982 - | hypothetical protein YPK_0363 390322 - 391251 + | homoserine O-succinyltransferase TERM 405 391296 - 391316 + F 70 -7.5 -3.8165 | opp_overlap 391295, overlap 391293 ATAGATGCTAATTAT GGCGGCT GAATCGA GGCCGCC TATTATTTTCTTCCC TERM 406 392283 - 392294 + G 73 -7.2 -4.27843 | opp_overlap 392272, overlap 392280 GCAACTGCTGGCGAA GGGC AGCG GCCC TTATTTCTATTTGCC YPK_0364 391672 - 393270 + | malate synthase A YPK_0365 393317 - 394624 + | isocitrate lyase TERM 407 394760 - 394734 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 394743, overlap 394735 394750 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 408 394761 - 394735 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 394743, overlap 394734 394750 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 409 394835 - 394858 + G 74 -6.6 -4.4009 | opp_overlap 394834 394835, overlap 394839 CACTTTGTCAATAAC CTCAGCCTGC TTAT GCAGGCTCCG TTTTGTACGGTAGGG TERM 410 394839 - 394854 + G 71 -10.4 -2.80345 | opp_overlap 394835 394834, overlap 394835 TTGTCAATAACCTCA GCCTGC TTAT GCAGGC TCCGTTTTGTACGGT TERM 411 394966 - 394980 + G 71 -7.1 -4.07568 | TCTGGAGGTCACTGC CGGTG CTCAA CACCG TTTTGAGCAGGCCGA TERM 412 396450 - 396469 + G 74 -2.8 -5.0133 | gap 1 GCCATTTCTTATGCA GTGACCGGA AAG TCAGG-CAC TTTTTTGAGGAGATG YPK_0366 394769 - 396607 + | (isocitrate dehydrogenase (NADP(+))) kinase YPK_0367 397569 - 396727 - | IclR family transcriptional regulator TERM 413 397364 - 397349 - G 73 -4.6 -4.71828 | ACCTGACGAACAAAA CCCTGC TGTT GCATGG TCGTGAGTAAACGGT TERM 414 399722 - 399710 - g 74 -4.1 -4.9218 | GATTTAGCAGAAAAA TACCG TGA CAGTA AAAGTGGCGAGGTCG TERM 415 400525 - 400490 - g 88 -7.5 -5.0133 | opp_overlap 400490 CATGCCCGTAAAAAA CCGCGCACCCCGC CGGTCAGTTT GCAGGCTGCACGG AATAACCCAACGGTG YPK_0368 397784 - 401479 + | methionine synthase TERM 416 401504 - 401557 + T 80 -8.9 -3.967 | opp_overlap 401513, overlap 401512 401517 AAAGGCGAGATAATG TTGATCTAACGAGGGGGATAAACCG TGAT TGGTTTATCCCCTTCGATATTACAG TTTAATTAATGGATT TERM 417 401512 - 401549 + T 100 -15.7 -3.13784 | opp_overlap 401513, overlap 401504 401517 GATAATGTTGATCTA ACGAGGGGGATAAACCG TGAT TGGTTTATCCCCTTCGA TATTACAGTTTAATT TERM 418 401548 - 401513 - T 100 -16.3 -3.0701 | opp_overlap 401512 401504 401517 ATAATGTTGATCTAA CGAGGGGGATAAACC GTGATT GGTTTATCCCCTTCG ATATTACAGTTTAAT TERM 419 401517 - 401544 + T 100 -15 -3.19293 | opp_overlap 401513, overlap 401512 401504 TGTTGATCTAACGAG GGGGATAAACCG TGAT TGGTTTATCCCC TTCGATATTACAGTT YPK_0369 402360 - 401575 - | hemolysin TERM 420 402078 - 402091 + g 90 -8.1 -5.13722 | TATAGCTGATGGTCT GGACG CTAT CGTCC TTTTCTTTTCCTAAG TERM 421 402697 - 402730 + r 90 -10.9 -3.9344 | CACTGGTGCTGCCTT GACTATGGCCGCCGC CCAA GCCGCCGCCAAAGTC TTTACTGTTCGGCTT TERM 422 405068 - 405086 + r 74 -4.5 -4.89393 | opp_overlap 405068, overlap 405078 405079 CGTGTTAGCAGTGAA TGCCCGA TGATC TCAGGCA TTTTTCTGAGGTTTA YPK_0372 406680 - 405295 - | aspartate kinase TERM 423 407335 - 407316 - g 85 -11.4 -3.75115 | opp_overlap 407314 407316 407331, overlap 407312 TGGTGAGAAAATTAA CCGCACAG AAGA CCGTGCGG TATTGCATATTGCTC YPK_0373 407050 - 408696 + | glucose-6-phosphate isomerase YPK_0374 408809 - 408693 - | hypothetical protein TERM 424 408736 - 408758 + g 100 -10.6 -5.86332 | ATCTGTACTTTATTA GGCCTCTTAT TCT GTAAGGGGCC TTTTTTTTGGCTTGA TERM 425 408907 - 408921 + G 83 -4.2 -5.52384 | overlap 408919 GATTGATTATGTTGG CCGCTA TTT TGGTGG TTTTTTTGGTGAAGG YPK_0375 408831 - 409238 + | phosphate-starvation-inducible E TERM 426 409303 - 409283 - T 100 -9.6 -5.24799 | overlap 409284 TGATAAACATAAAAA TGGCGGCC ATTAA GGCCGCCC TAAAGACACAGTACC TERM 427 409302 - 409284 - T 100 -13.1 -3.73253 | overlap 409283 GATAAACATAAAAAT GGCGGCC ATTAA GGCCGCC CTAAAGACACAGTAC YPK_0376 410271 - 409381 - | binding-protein-dependent transport systems inner membrane component YPK_0377 411862 - 410285 - | fructose-bisphosphate aldolase TERM 428 411805 - 411819 + g 79 -2.1 -5.42198 | gap 1, overlap 411807 ATTTAAGCGCATCAC TCTGCC ACCA GGC-GA TTTTCTTTTTTCGGC TERM 429 412010 - 412031 + r 95 -11.5 -3.87815 | ATGGCAAATTCTGTT GAGGCACGG CGAA CCGTGCCCC TTTCTCAGAGTAGAC YPK_0378 413260 - 412049 - | extracellular solute-binding protein TERM 430 413003 - 412965 - G 73 -7.5 -4.29738 | gap 1, opp_overlap 412998 GCATAGCCACCAAAA CGGTCATGGGCCCAGA AGATAATG TCCGGGCC-ATCACCG GTTGCGGCGACTTGT YPK_0379 413738 - 414100 + | glycosidase TERM 431 414316 - 414296 - g 72 -11.1 -2.64466 | opp_overlap 414291, overlap 414295 AACGCATGAATGAAG TGCCGCCCT CTG AGCGCGGCA TTGGCATGGTGTTTC YPK_0380 414088 - 415197 + | ABC transporter related YPK_0381 415268 - 416539 + | porin LamB type TERM 432 416551 - 416570 + F 80 -11.4 -2.66969 | overlap 416548 416548 GTAACAGCGATTCTT CAGCCGTC TGCG GGCGGCTG TACGTTATCTTGATG TERM 433 416968 - 416982 + G 83 -11.4 -3.52906 | opp_overlap 416967, overlap 416965 AGATATTCAACTTAC TGCGGG CAG CCCGCA TATTTCTCAGGGTGA TERM 434 417008 - 417018 + G 77 -8.2 -4.28774 | GGTGAGGTTGAAGGC GCGG TAG CCGC TTTTGCCTTGCCTGC TERM 435 417197 - 417170 - g 73 -4.9 -4.7497 | gap 1, overlap 417190 TTCACCTATGAAAAA GCGGGC-ATCAT GATCA ATGATCGCCTGC AAGGCGTGATGAAAT YPK_0382 416780 - 417691 + | maltose operon periplasmic TERM 436 417724 - 417741 + F 100 -12.7 -5.41359 | TATGGCTGGATGGTT GGTGCGC CTTG GCGCACC TTTTTTCGTTTGGTT YPK_0383 418030 - 418440 + | hypothetical protein TERM 437 418579 - 418550 - gT 100 -13.7 -4.7871 | overlap 418551 AACCATCAGTAAAAA CCAGCAGCCAATA ACCT CATTGGCTGCTGA AGAAATACAATATTA TERM 438 418578 - 418551 - gT 100 -15 -3.46141 | overlap 418550 ACCATCAGTAAAAAC CAGCAGCCAATA ACCT CATTGGCTGCTG AAGAAATACAATATT YPK_0385 419110 - 418592 - | Hcp1 family type VI secretion system effector YPK_0384 418431 - 418649 + | hypothetical protein TERM 439 419994 - 419967 - g 82 -5.6 -5.01732 | AATGTGGCGAAAAAA GTTCCAGAGCTC AAAA AAATTCTGGAAC TACGGGAAGCGCTAG YPK_0386 419634 - 420131 + | type VI secretion protein TERM 440 420883 - 420902 + G 73 -8.6 -3.80094 | AAATGGCGTGCTCTG CGTGAGTC TGAA GATTCACG TTATCTTGGTTTGAC TERM 441 421357 - 421343 - g 76 -8.6 -3.97406 | overlap 421334 421353 GGAAAATGGCAGAAA CCAACT ACA AGTTGG GCACGCAACTGCCGT YPK_0387 420199 - 421680 + | EvpB family type VI secretion protein YPK_0388 421687 - 422127 + | type VI secretion system lysozyme-related protein TERM 442 422333 - 422302 - gf 73 -2.4 -5.00884 | gap 1, opp_overlap 422303 422306, overlap 422303 422306 ACCTGCGTGAAAAAA TCGATGA-TCAATTC CCT GAATTGACTCATGGT TTACTGAATATGTTG YPK_0389 422127 - 423947 + | type VI secretion protein YPK_0390 423911 - 424981 + | type VI secretion protein TERM 443 425130 - 425119 - g 76 -2.2 -5.28778 | overlap 425123 ACCATGGATAAAAAA CAAC CAAC GCTG TCATTGCGGGTCGTC YPK_0391 425107 - 426423 + | FHA domain-containing protein TERM 444 426640 - 426627 - g 78 -5.2 -4.87893 | AACCCTAATGAAAAA GGGG AAGCGG CCCC GACTGAGATAGTGGT YPK_0392 426423 - 426968 + | putative lipoprotein TERM 445 427743 - 427762 + G 71 -6.4 -4.15453 | ATTTGGCACATCAGG CGATTCTG CATC CAGAAGCG TTTTACCATCAGTTG YPK_0393 426971 - 428317 + | type VI secretion protein YPK_0394 428317 - 429084 + | hypothetical protein TERM 446 429855 - 429845 - g 73 -3.2 -4.83615 | CAGGTGCCAGAAAAA CTGC GTA ACAG CGAGTTGATGACGCT TERM 447 431641 - 431615 - g 76 -8.6 -4.08706 | overlap 431611 TTGTTATTACAGAAA GTGGCCGCTGGC ACC GCTATCAGCCAC ATTCGGATCGCGGTA YPK_0395 429095 - 431698 + | type VI secretion ATPase TERM 448 432428 - 432416 - g 75 -6.2 -4.54821 | ACGGTAACGACAAAA GCCG TATTG CGGC CAGTTTGGGGCTATC YPK_0396 431695 - 432492 + | Fis family transcriptional regulator YPK_0397 432489 - 433175 + | hypothetical protein YPK_0398 433181 - 434569 + | type VI secretion-associated protein TERM 449 434656 - 434678 + G 84 -12.8 -3.23711 | opp_overlap 434656 434655, overlap 434647 TTCCTCGCCTTAAAG CGTCAATACC GGT GGTATTGGCG TTGATGGCTTGTGCG TERM 450 434932 - 434918 - g 71 -2.8 -4.91084 | TATCGAACAACAAAA CCACTA CCT CAATGG CTGGAAGCACCAACT TERM 451 435968 - 435943 - g 83 -6.9 -5.00616 | TCTGGCTGCAAAAAA CGAGAAAGCGA ATGT TCATTTTCTCG GGGGTGGGTGCCCTG TERM 452 437285 - 437267 - g 77 -8.8 -4.18018 | overlap 437268 GTTGGCGATCCAAAA CTCGCCCG CGC CGGGCAAA GCGGCGTTGAAGGCG TERM 453 437284 - 437268 - g 73 -10.1 -3.10597 | overlap 437267 TTGGCGATCCAAAAC TCGCCCG CGC CGGGCAA AGCGGCGTTGAAGGC YPK_0399 434601 - 438134 + | type VI secretion protein IcmF TERM 454 438490 - 438480 - g 79 -2.4 -5.47218 | opp_overlap 438480 CCGCACCCAAAAAAA TGGC CTG GCCG GTTTCACCGAGGGCT TERM 455 439468 - 439480 + G 73 -10.5 -3.13403 | opp_overlap 439468, overlap 439466 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA TERM 456 439480 - 439468 - g 75 -10.5 -3.39449 | opp_overlap 439468 439466 GCCGATGAACATCAA CCGGC CTC GCCGG TCTTGATAAAACAAA YPK_0400 438259 - 439566 + | ImpA domain-containing protein TERM 457 439804 - 439784 - g 81 -9.7 -4.08767 | overlap 439785 CCGAGGTGGCTAAAA CTGCCCTGG ATG CCAAGGCAA AAGTACTGGACGGCG TERM 458 439803 - 439785 - g 74 -11 -3.05046 | overlap 439784 CGAGGTGGCTAAAAC TGCCCTGG ATG CCAAGGCA AAAGTACTGGACGGC YPK_0401 439588 - 441810 + | type VI secretion system Vgr family protein YPK_0402 441816 - 442274 + | hypothetical protein TERM 459 442410 - 442425 + G 74 -6.8 -4.34488 | overlap 442401 CACCGGCGGGGCGAC GCTGGT CGCT ACCGGC TTTATTGTGGGTATG TERM 460 443629 - 443580 - g 78 -12.3 -2.74144 | opp_overlap 443592, overlap 443579 443582 443620 CCGTGAGGGGCAAAT CACCCGCCAGTTTGGTTACCA TGGCCATC TGATCAACAAACTGGCGGATG TCAGGGGGCTGGAGT TERM 461 444275 - 444248 - g 72 -10.6 -2.93348 | GCTACGAATATGATA TCGATGGCCATC TGCT GACGGTCATCGA TGCTGAAAACCATTC YPK_0403 442267 - 446439 + | YD repeat-containing protein YPK_0404 446442 - 446861 + | hypothetical protein TERM 462 447011 - 447027 + F 82 -2.3 -5.64873 | overlap 447010 CATTACCAATTCCCT GAAAAAT TAA ATTTTAC TTTTTTATTGTTACG YPK_0405 447145 - 447390 + | hypothetical protein YPK_0406 447390 - 447878 + | putative cytoplasmic protein TERM 463 447919 - 447891 - T 84 -5.2 -5.26907 | opp_overlap 447891 TAAGATAAAATAAAA CCGGCGAAATCC CTCTT GGATCTTTCCGG CCTTTTATCCATAAC YPK_0407 448286 - 447924 - | HSP20-like protein YPK_0408 448319 - 448594 + | hypothetical protein TERM 464 448632 - 448644 + GF 75 -10.5 -2.85351 | GTTACTGCGCCAGTT GGCGG TGT CCGCC TATGGTCTCCGGCGA YPK_0409 448579 - 448686 + | hypothetical protein TERM 465 449973 - 449940 - gf 71 -9.5 -3.05022 | gap 1 CCCGTTACACACACA GTGACGC-GCATGCCA GTC CGGCGGGCAGCGTCAC AAAAATGGTCATGCC TERM 466 450393 - 450432 + GF 70 -7.9 -3.72576 | overlap 450390 450394 450396 CACTGAGTTCCACGC TGGTTGGCACGGTCA GCTACGGTTA TGACCGTGCCGGTCG TTTACTGAGCGCGAC TERM 467 450394 - 450431 + GF 70 -9.2 -2.83403 | overlap 450390 450393 450396 ACTGAGTTCCACGCT GGTTGGCACGGTCA GCTACGGTTA TGACCGTGCCGGTC GTTTACTGAGCGCGA TERM 468 451160 - 451148 - gf 73 -4.7 -4.69027 | opp_overlap 451158 451159, overlap 451137 451150 AAACGCAGCCAAAAA GACGG CTA CCGGC CACAGCTGTGGCGTT YPK_0410 448646 - 452215 + | YD repeat-containing protein TERM 469 452284 - 452240 - g 100 -6 -5.64006 | ATGCAATGAAAAAAA TAAAATTAGCTATAGATGGA ATTAA TCAAGCTATAGATAATTTTA ATGAGGTTCAGACAT YPK_0411 452212 - 452493 + | hypothetical protein TERM 470 452504 - 452535 + F 88 -9.7 -4.17048 | gap 1, opp_overlap 452504 452508 TTTAAAAGTCGACAA GTAAGCCAAAA-CT CCTTC AGATTTTGGCTTAC TTATTTTAAAGGCAG TERM 471 452535 - 452504 - f 80 -10.4 -3.42366 | gap 1, opp_overlap 452504, overlap 452508 TTTAAAAGTCGACAA GTAAGCCAAAACTCC TTC AGA-TTTTGGCTTAC TTATTTTAAAGGCAG YPK_0412 452695 - 452916 + | putative rhs accessory genetic element TERM 472 453146 - 453168 + T 100 -4 -6.14618 | opp_overlap 453147, overlap 453147 TTTTTTGTGATACAA AGTGACTGGT TTA GCCAGCCACA TTTTTTTGTTTTATA TERM 473 453167 - 453147 - T 80 -9 -4.03234 | opp_overlap 453146 453147 TTTTTGTGATACAAA GTGACTGG TTTAG CCAGCCAC ATTTTTTTGTTTTAT TERM 474 453147 - 453167 + T 75 -7.5 -4.25111 | opp_overlap 453147, overlap 453146 TTTTTGTGATACAAA GTGACTGGT TTA GCCAGCCAC ATTTTTTTGTTTTAT YPK_0413 454105 - 453206 - | xylose isomerase domain-containing protein YPK_0414 455232 - 454102 - | oxidoreductase domain-containing protein YPK_0415 455502 - 456368 + | AraC family transcriptional regulator YPK_0416 457031 - 456528 - | RbsD or FucU transport YPK_0417 457966 - 457037 - | ribokinase-like domain-containing protein TERM 475 457795 - 457775 - G 83 -11.9 -3.58536 | AAATTCATGGCCAAA GGTGTCATC ACC GACGACACC CGCATAGGCAACCTC YPK_0418 458848 - 458147 - | deoxyribose-phosphate aldolase YPK_0421 459914 - 461035 + | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein TERM 476 461160 - 461182 + G 70 -9.9 -3.1332 | gap 1, opp_overlap 461158 ATCTACAGCAAATTG CCCAAG-CGG CTGA CCGGCTTGGG TTCGGTGGTGTGTTG YPK_0422 461054 - 462202 + | alkanesulfonate monooxygenase YPK_0423 462214 - 463008 + | binding-protein-dependent transport systems inner membrane component TERM 477 463438 - 463462 + G 100 -11.3 -4.57882 | AACGTGTTGCACTGG CGCGGGCGCTG ATC CATCGCCCCCG TTTATTGTTGTTGGA YPK_0424 463005 - 463820 + | ABC transporter related TERM 478 464273 - 464299 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 464262, overlap 464268 464274 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 479 464274 - 464300 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 464262, overlap 464268 464273 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 480 464383 - 464400 + T 70 -2.7 -5.00884 | CGCCTTTTTATTCTT GGTGTAA CGCT TTGCATC TTTTTTAAAGCGGCT YPK_0425 464642 - 464439 - | RelB antitoxin TERM 481 464754 - 464713 - H 88 -11.1 -3.75015 | gap 1, opp_overlap 464704 464716 464717, overlap 464716 ATAACCTCCATTAAA TTAC-CCTTATTGTAGCTAC GAT GTAGCTACAATAAGGTGTTT GAGCGATGTTTATTC TERM 482 464750 - 464716 - H 100 -17.4 -2.96873 | opp_overlap 464704 464716 464717, overlap 464713 ACCTCCATTAAATTA CCCTTATTGTAGCTAC GAT GTAGCTACAATAAGGT GTTTGAGCGATGTTT TERM 483 464716 - 464751 + H 100 -17.2 -3.58329 | gap 1, opp_overlap 464716 464713, overlap 464704 464717 ACCTCCATTAAATTA C-CCTTATTGTAGCTAC GAT GTAGCTACAATAAGGTG TTTGAGCGATGTTTA TERM 484 464717 - 464749 + H 100 -20.9 -3.36341 | opp_overlap 464716 464713, overlap 464716 464704 CCTCCATTAAATTAC CCTTATTGTAGCTAC GAT GTAGCTACAATAAGG TGTTTGAGCGATGTT TERM 485 465268 - 465281 + G 70 -8.1 -3.86524 | opp_overlap 465258, overlap 465267 GCAAAGCCGGTTTCC CACCG ACGG CGGTG TTTGTCGCGACCTGT TERM 486 465997 - 466020 + G 71 -4.6 -4.64657 | gap 1, opp_overlap 465979, overlap 466000 GCGGTGGTAAAGCGC TGACCACTGAC TCC GTCAGTAG-CA TTTTTGCGGGTTTGG YPK_0426 465096 - 466451 + | xanthine/uracil/vitamin C permease TERM 487 466734 - 466713 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPK_0427 467916 - 466708 - | transposase mutator type YPK_0428 468170 - 469819 + | Na+/H+ antiporter TERM 488 469831 - 469848 + T 82 -10.5 -3.61268 | TTAATATCTTACGGA CGGGGCT ATTT GGCCCCG TTTACCGATTACATG YPK_0429 471223 - 470036 - | hypothetical protein TERM 489 470601 - 470633 + g 88 -8.4 -4.74801 | opp_overlap 470600 470601 ATGGGTTCACCAAAG GCGGTGACTAACGC ATTTC GCGTTAATGGCCGC TTTTTGCTCAGATTA YPK_0430 472295 - 471375 - | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPK_0431 473102 - 474091 + | carbohydrate ABC transporter periplasmic-binding protein YPK_0432 474295 - 475791 + | ABC transporter related TERM 490 475808 - 475825 + G 73 -5.5 -4.55118 | opp_overlap 475800 CTAAAACTGCGCCAA CTCACGG GGCA CCATGAG TTTTATCTCGGGTTG YPK_0433 475784 - 476773 + | monosaccharide-transporting ATPase YPK_0434 476775 - 477728 + | monosaccharide-transporting ATPase YPK_0435 477747 - 479384 + | FGGY-family pentulose kinase YPK_0436 479381 - 479986 + | sugar isomerase (SIS) TERM 491 480020 - 480045 + T 100 -7.5 -5.626 | gap 1, opp_overlap 480020 CGCGTGAAAGAGAAA CACCGCAACGGT ATG GCCGC-GCGGTG TTTTTTTATCAAGTC TERM 492 480045 - 480020 - T 86 -9 -4.32857 | gap 1, opp_overlap 480020 CGCGTGAAAGAGAAA CACCGCAACGG TATGG CCGC-GCGGTG TTTTTTTATCAAGTC YPK_0437 480939 - 480085 - | glutathione S-transferase domain-containing protein TERM 493 480563 - 480545 - G 71 -6.7 -4.1552 | GATTTTGGTAAGAAA TGACCGA ATTTA TCGGCCA AATAAAGCAGAATGG YPK_0438 481190 - 482536 + | hypothetical protein TERM 494 482560 - 482605 + T 88 -6.8 -5.12707 | opp_overlap 482559 482560 ATCTTTCCTGACAAG CCCGGGTATGAACTGTCC AACTTTATGG GGCCAGTCCATGCGCGGG TTTTTTACGCTTTAA YPK_0439 482698 - 482582 - | hypothetical protein YPK_0440 483863 - 482688 - | hypothetical protein TERM 495 482745 - 482760 + g 85 -6.2 -5.04082 | overlap 482751 CTCAAGAATGTTAAG TGTCTT GGAT AAGACA TTTTCTTGTTCTTTG TERM 496 483762 - 483746 - G 71 -2.9 -4.93296 | overlap 483747 483750 CCATGACGATAAAAA CCAGCAC AGG GTCCTGA GTCTCACTTTTAAGA TERM 497 484099 - 484120 + G 77 -4.4 -5.12068 | opp_overlap 484102, overlap 484102 GTCATAGGCACAAAA AAACCTGC ACGGAG GCAGGTTC TTTTTATTCGGTATG TERM 498 484117 - 484102 - g 100 -6.1 -5.65177 | opp_overlap 484099 484102 ATAGGCACAAAAAAA CCTGC ACGGAG GCAGG TTCTTTTTATTCGGT TERM 499 484102 - 484117 + G 75 -6.1 -4.64495 | opp_overlap 484102, overlap 484099 ATAGGCACAAAAAAA CCTGC ACGGAG GCAGG TTCTTTTTATTCGGT YPK_0441 484021 - 484173 + | hypothetical protein YPK_0442 484412 - 484200 - | cold-shock DNA-binding domain-containing protein YPK_0443 484884 - 484672 - | cold-shock DNA-binding domain-containing protein YPK_0444 485356 - 485144 - | cold-shock DNA-binding domain-containing protein TERM 500 485855 - 485819 - R 78 -10.3 -3.33162 | gap 1, overlap 485820 TACGGCATTTGATAA CCAGTCCGTAGGCATG GGCTAT CA-GCCTACAGACTGA AAACCGGGGTTAACG TERM 501 485854 - 485820 - R 80 -11.6 -2.59683 | gap 1, overlap 485819 ACGGCATTTGATAAC CAGTCCGTAGGCATG GGCTAT CA-GCCTACAGACTG AAAACCGGGGTTAAC TERM 502 485880 - 485859 - R 70 -5.8 -4.26188 | opp_overlap 485859 CCTACAGACTGAAAA CCGGGG TTAACGTGCC CCCCGG TTGCTACGTTTAGCG YPK_0445 486357 - 485890 - | 17 kDa surface antigen YPK_0446 486833 - 487645 + | beta-lactamase domain-containing protein YPK_0447 487710 - 488600 + | 3-hydroxyisobutyrate dehydrogenase YPK_0448 488792 - 489187 + | carboxymuconolactone decarboxylase YPK_0449 489341 - 490705 + | major facilitator transporter YPK_0450 490795 - 491469 + | GntR family transcriptional regulator YPK_0451 491535 - 492011 + | hypothetical protein TERM 503 492735 - 492710 - T 82 -4.6 -5.32882 | opp_overlap 492710 CATTATTATAAAAAA GGCACTAACC AATTAA GGAAAGTGCC TTTTTAAACAACAAG YPK_0452 493061 - 492765 - | Fis family transcriptional regulator YPK_0453 494051 - 493086 - | NifR3 family TIM-barrel protein YPK_0454 495521 - 494640 - | ribosomal protein L11 methyltransferase TERM 504 494673 - 494702 + g 71 -7.2 -3.99324 | AATGCGGCACCATTC TTCTTTCTCGGC GACTGG GTCGAGAATGAA TTTATCCTCATAGGC TERM 505 494841 - 494873 + g 78 -9.2 -4.09685 | gap 1, opp_overlap 494834 CAGAATATTGGCCAC GACCACGTCAGCAGA TAGT TCTGCGGGC-TGGTC TTTTGCCAGATACAG TERM 506 495538 - 495569 + r 100 -15.9 -2.77148 | overlap 495536 495533 495531 GCAATTCTCTCAAGC GCCGGTATCGGGG CCATAA CCACGATACCGGC TGATGTGTTGATAGA YPK_0455 497051 - 495597 - | sodium/pantothenate symporter TERM 507 496932 - 496918 - G 75 -5.6 -4.66938 | ATCGCCAATACAAAA CCGCCC ATC GAACGG TTGCCGATAAAATAT YPK_0456 497283 - 497041 - | hypothetical protein YPK_0457 498343 - 498519 + | hypothetical protein TERM 508 498545 - 498524 - T 75 -2.3 -5.40004 | overlap 498525 GAGCAAATTAAAAAA TTTCAGCTT AAAT AAACTGAAG GTAAGATATACGGCT TERM 509 498640 - 498608 - T 86 -12.1 -3.20435 | opp_overlap 498609, overlap 498609 TTAATTAGCCATCAA GGCCTGAATTCCGCA CTC TACAGAATTCAGGCT TTTTAACTTCAGTTT TERM 510 498609 - 498639 + T 100 -11.2 -4.75776 | opp_overlap 498608 498609 TAATTAGCCATCAAG GCCTGAATTCCGCA CTC TACAGAATTCAGGC TTTTTAACTTCAGTT TERM 511 498639 - 498609 - T 100 -15.6 -2.5194 | opp_overlap 498609, overlap 498608 TAATTAGCCATCAAG GCCTGAATTCCGCA CTC TACAGAATTCAGGC TTTTTAACTTCAGTT TERM 512 498710 - 498669 - T 100 -13.1 -5.26316 | opp_overlap 498669, overlap 498670 498671 TTATGCCATAAAAAA CCGCCCCCCAATATCAGGT TATT ATCCAATATTGGGGGGCAA TTCAATTAACCGGCC TERM 513 498709 - 498670 - T 100 -14.4 -3.75067 | opp_overlap 498669, overlap 498669 498671 TATGCCATAAAAAAC CGCCCCCCAATATCAGGT TATT ATCCAATATTGGGGGGCA ATTCAATTAACCGGC TERM 514 498708 - 498671 - T 100 -15.7 -2.84317 | opp_overlap 498669, overlap 498670 498669 ATGCCATAAAAAACC GCCCCCCAATATCAGGT TATT ATCCAATATTGGGGGGC AATTCAATTAACCGG YPK_0458 500114 - 498765 - | acetyl-CoA carboxylase, biotin carboxylase YPK_0459 500590 - 500126 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein TERM 515 500407 - 500428 + g 85 -12.3 -3.40403 | GTGCTGGGGCGACGG CGGCAGCCA GCGC TGGCTGCTG TTGTGGTGCAGCAAA YPK_0460 501200 - 500748 - | 3-dehydroquinate dehydratase, type II YPK_0461 502082 - 501462 - | ferric reductase domain-containing protein YPK_0462 503182 - 502082 - | oxidoreductase molybdopterin binding TERM 516 502468 - 502433 - G 73 -7.4 -4.14257 | opp_overlap 502434 GCCAACAACCATAAA GGCCAGCGGGTGCATG GCTT CATCCAACCGCAGCCC TTCGACATAGGGGTA TERM 517 502494 - 502508 + g 71 -4.2 -4.82901 | opp_overlap 502478 GGGTAGTCCAGTCCC CCGC CAATAAA GCGG TTTTTCTGCCCAGGC TERM 518 503301 - 503333 + r 89 -12 -3.26947 | opp_overlap 503296 503295 AATATGAAATTTCTA CCACCGAGGCAAGT GTGAA ACTGACCTCGGTGG TTGCTGTAACGATTA YPK_0463 504382 - 503405 - | quinone oxidoreductase TERM 519 504534 - 504521 - H 84 -3.8 -5.4433 | AGACAGAAATAAAAA CCCT GTGTTA AGGG TGAGCCAATATAGCG TERM 520 504910 - 504895 - g 75 -5.4 -4.77165 | TGTGCCAGAAGAAAA TGGAAC AACG GCTCCA AAGTATTGTGACCGC YPK_0464 504783 - 506699 + | diguanylate cyclase/phosphodiesterase TERM 521 506701 - 506691 - f 84 -2.6 -5.63517 | TCCGGAAAGAAAAAA TATT CGT AATA GGGCCATGTTAGCCT TERM 522 507268 - 507283 + G 75 -6 -4.55295 | opp_overlap 507267 507269, overlap 507269 TTCGTCCAATGAAAG ACGGCG TTAT CGCCGA TTTCTTTGTCACGGA TERM 523 507269 - 507282 + G 73 -9.5 -3.32695 | opp_overlap 507267 507269, overlap 507268 TCGTCCAATGAAAGA CGGCG TTAT CGCCG ATTTCTTTGTCACGG TERM 524 507282 - 507269 - g 74 -9.5 -3.54146 | opp_overlap 507269 507268, overlap 507267 TCGTCCAATGAAAGA CGGCG TTAT CGCCG ATTTCTTTGTCACGG TERM 525 507485 - 507464 - g 73 -10.1 -3.14878 | opp_overlap 507470, overlap 507462 GTTCCTAATTGAAGA GCCGATGGC TGCG GCCATTGGC GCGGGCTTGCCTGTT YPK_0465 507036 - 508079 + | cell shape determining protein MreB YPK_0466 508283 - 509278 + | rod shape-determining protein MreC YPK_0467 509275 - 509763 + | rod shape-determining protein MreD YPK_0468 509777 - 510370 + | maf protein YPK_0469 510360 - 511829 + | ribonuclease TERM 526 513454 - 513433 - g 85 -10.1 -4.07687 | opp_overlap 513437 AGCCGTGGCTGAAAA TACTGGCGG GCAT CCGCCTGTA TGATGCCACCGATGC TERM 527 514391 - 514370 - g 71 -3 -4.96848 | gap 1 GCCGCTAGATAAAAA CAGCGGTCA GGCAT TG-CCACTG CATGTTCAGGTGAAC YPK_0470 511923 - 515846 + | hypothetical protein YPK_0471 515843 - 516712 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YPK_0472 516724 - 518169 + | peptidase U62 modulator of DNA gyrase TERM 528 518244 - 518201 - T 100 -17.1 -2.79679 | opp_overlap 518195 518194 518194, overlap 518230 AATATGGGTAGTAGA CTTTGTTGGCACTAAATTT GATATT AAATTTTGTGCCAACAAAG CATCGGTATATTAGT TERM 529 518321 - 518362 + T 100 -17.6 -3.22091 | opp_overlap 518315 518330 AAATAAGTATGATGG TTCTAGATACCTTCCCAA CTCAAA TAGGGAAGGTATCTAGAA TTAATGAATTACAAT YPK_0473 521229 - 518371 - | YD repeat-containing protein TERM 530 520832 - 520807 - G 71 -3.1 -4.96848 | opp_overlap 520807 520808 520828, overlap 520808 TTCGCCATAGAAAAA GCGGTCAGTAA CCGT TTTCAGGCCGC CTTTGGCTTGCTCGC YPK_0474 521456 - 521283 - | hypothetical protein YPK_0475 521802 - 521443 - | hypothetical protein YPK_0476 522200 - 521799 - | putative phage-related protein YPK_0477 522515 - 522213 - | putative phage-related protein TERM 531 522635 - 522609 - R 70 -9.4 -2.8805 | opp_overlap 522601 522598 ATGACTGGGTATAGA GCCTGACCGG GAAGGGG CCGGTTAGGC TCTGCGGCTAATATT YPK_0478 527118 - 522649 - | virulence plasmid 65kDa B protein TERM 532 523635 - 523645 + g 73 -3.2 -4.88388 | ATATCATTTGGGTAA TGGC ACA GCTA TTTTTATCCCATTCT TERM 533 525355 - 525344 - G 73 -7.2 -4.25283 | AGGGGGTGACCAAAA CGGC CATG GCCG AGATTGGGCCAGCAG TERM 534 526257 - 526275 + g 75 -6 -4.5442 | AGAAGGCGTCCTGAC GGAAATTC CAA GATTTTCC TTTTATGATTACCGG TERM 535 527134 - 527153 + r 83 -11.4 -3.06796 | opp_overlap 527122, overlap 527122 527136 AAAGGGCTCTCCTAT CAGGCCCT CTGT GGGGCCTG TTGACTGAGGTAACG YPK_0479 530768 - 527175 - | toxin subunit TERM 536 527223 - 527234 + g 76 -2.2 -5.34309 | GATGTCGCTCAGGCT TTGC AGCA GCAG TTTTTGTTTGCTAGT TERM 537 528032 - 528047 + g 71 -4.7 -4.59511 | opp_overlap 528034 GGCCTTGCTCTAACT CAGCT AAATTC AGCTG TTTTTGCGCCATATT TERM 538 530710 - 530740 + g 71 -2.7 -4.93877 | gap 1, overlap 530718 530722 TTAGCAAGATAGTAG TTAACCAAT-GCGT CGCG GCGCGATTCGTTAA TTTTATTTAATACAG YPK_0480 533310 - 530809 - | virulence protein TERM 539 530896 - 530906 + g 85 -5.4 -5.18355 | TATTTTAATTATGGT TCCA GGA TGGA TTTTTAATTTTTCAG TERM 540 532518 - 532534 + g 85 -5.9 -5.06816 | GATCATTTTTATTGC TGCTATT TTC AATGGCA TTTTTATTAAGCCAT TERM 541 533489 - 533517 + r 78 -9.1 -3.84185 | TTTTTATTGTTATCT TCTGTTTAACTAA ATT TTAGTTAAACAAA TTGTATTTAACTACG YPK_0481 534358 - 533546 - | LysR family transcriptional regulator YPK_0482 535584 - 534673 - | LysR family transcriptional regulator TERM 542 535949 - 535963 + G 83 -5 -5.22768 | GATATTTCTTGAGCT GCTAAT TTC ATTGGC TTTGTTTTTTGTTGT YPK_0483 535887 - 536090 + | hypothetical protein YPK_0484 536098 - 537033 + | secretion protein HlyD family protein YPK_0485 537035 - 538990 + | fusaric acid resistance protein region TERM 543 539129 - 539151 + F 71 -7 -4.22858 | opp_overlap 539133, overlap 539133 CGGTTCGAGCCCTCA TAAAGGCGCT CAC GGCGTCTTTG TTATTTCTCTCTTCT TERM 544 539133 - 539147 + F 75 -5.6 -4.65458 | opp_overlap 539133, overlap 539129 TCGAGCCCTCATAAA GGCGCT CAC GGCGTC TTTGTTATTTCTCTC TERM 545 539493 - 539474 - g 81 -7.8 -4.56597 | overlap 539440 539475 CTGCCTGGCGAAAAA CGCCCGCT AAAC AGCGAGCA GAGATTTTACAGCGT YPK_0486 539257 - 540726 + | succinic semialdehyde dehydrogenase YPK_0487 540921 - 541394 + | guanine-specific ribonuclease N1 and T1 YPK_0488 541399 - 541680 + | barstar (barnase inhibitor) TERM 546 541731 - 541784 + T 100 -14.6 -4.58283 | gap 1, opp_overlap 541736 ATAGATTATGCCCGC CAACAGTATTGAGTCGGGAGCCGGG AGTGA CCCGGC-CCCGCCCGATTACTGTTG TTTTTCAGCCAGTTC TERM 547 541779 - 541736 - T 71 -9.5 -3.02144 | gap 1, opp_overlap 541731 TTATGCCCGCCAACA GTATTGAGTCGGGAGCCGGG AGTGA CCCGGC-CCCGCCCGATTAC TGTTGTTTTTCAGCC YPK_0489 542324 - 541776 - | hypothetical protein TERM 548 542087 - 542099 + g 73 -4.7 -4.71318 | overlap 542087 CAATCAACTGGATCT GGCGG CGG CGGCC TTCTTTTTTGATCTT TERM 549 542087 - 542102 + g 76 -2.4 -5.30189 | overlap 542087 CAATCAACTGGATCT GGCGGC GGCG GCCTTC TTTTTTGATCTTCTG TERM 550 542159 - 542172 + g 71 -4.5 -4.57569 | CTTCATCCAACGGGA TGCGC TCGA GTGCA TTTTTACCCAGATCA TERM 551 542264 - 542274 + g 83 -2.4 -5.54907 | CCCAGATAATCTCAT CGTC ATC GTCG TTTTTATTTTCTGGG TERM 552 542546 - 542532 - g 73 -10 -3.3344 | ACTCAAGTTGCAGAA CAGCGT AAA ACGCTG GAACAAGCTGTTGCA YPK_0490 542505 - 543845 + | peptidase U62 modulator of DNA gyrase TERM 553 543900 - 543876 - f 100 -15.8 -3.29511 | opp_overlap 543876 543895 CTTACTGTTCCACAA CTCGCGGGTA GAAAA TACCCGCGAG TTTGCCTGCGCTTTT TERM 554 543876 - 543900 + F 100 -15.8 -3.67989 | opp_overlap 543876, overlap 543895 CTTACTGTTCCACAA CTCGCGGGTA GAAAA TACCCGCGAG TTTGCCTGCGCTTTT TERM 555 544456 - 544469 + G 71 -6.7 -4.24726 | TGTTTATATTAGATT CTGAC GTTG GTCAG TTTTACCCTTATTGT YPK_0491 544005 - 544613 + | hypothetical protein YPK_0492 544821 - 545207 + | cytochrome b562 TERM 556 545332 - 545364 + T 100 -15.7 -3.83921 | opp_overlap 545325 545336 TATAAAAGTGAGCGA TAGAGGGTAATGGCC TGC GGCGGTTACCCTCTA TTATCTTCTATTACC YPK_0493 545849 - 545439 - | GreA/GreB family elongation factor TERM 557 545783 - 545770 - G 74 -9.5 -3.54475 | overlap 545780 GTTGCGACCACAGAA CCGGC AAAA GCCGG TTGCGCTAGCAACGC TERM 558 545918 - 545886 - R 100 -14.1 -5.30339 | opp_overlap 545891 AGCAAAACATAAAAA CAACACCCCCACGCC ATA GGAGAGGGGGTGTTA GAAAATAGCTTAATG TERM 559 545891 - 545913 + r 76 -10.4 -3.03243 | opp_overlap 545886 AACATAAAAACAACA CCCCCACGCC ATA GGAGAGGGGG TGTTAGAAAATAGCT TERM 560 546117 - 546083 - R 73 -10 -3.02829 | TATATTTTGCGAATA CGGCTCCATCAGGACA TTT TGCACTGATGGAGTCA CCTATCACCGGCCCT YPK_0494 547863 - 546202 - | alpha,alpha-phosphotrehalase TERM 561 547216 - 547202 - G 88 -8.5 -4.84359 | overlap 547180 CCATCGGTATAAAAA CGGCG GCCAT CGCCG TCCAGATCATTAGGG TERM 562 547921 - 547888 - R 75 -5.9 -4.67353 | gap 1, overlap 547891 547892 TTATTCATTGAAAAA TGACCCCGCCAGACGA TCA CCG-CTGGCGGGAGAA CACAACTTATATCGA TERM 563 547918 - 547891 - R 89 -12 -3.26405 | gap 1, overlap 547888 547892 TTCATTGAAAAATGA CCCCGCCAGACGA TCA CCG-CTGGCGGGA GAACACAACTTATAT TERM 564 547917 - 547892 - R 91 -13.3 -2.55361 | gap 1, overlap 547891 547888 TCATTGAAAAATGAC CCCGCCAGACGA TCA CCG-CTGGCGGG AGAACACAACTTATA YPK_0495 549373 - 547958 - | PTS system, trehalose-specific IIBC subunit TERM 565 548478 - 548455 - G 71 -8.8 -3.73684 | overlap 548453 548448 ACAGAAAACCAAATA GTGCCGCACC GACC GGTGCGAAAC TGCCGGTCATCACCG TERM 566 549224 - 549238 + g 76 -7.2 -4.32436 | overlap 549220 GCCTTTGACCATTGA GAGATT TTC AATCTC TTTTGGTGATGCTAT TERM 567 549677 - 549690 + r 79 -6.7 -4.66938 | opp_overlap 549677, overlap 549673 TTTATTTTTATGGAA TGGGA ACGT TCCCA TTTTGTATTGAAGAT YPK_0496 550737 - 549784 - | LacI family transcription regulator TERM 568 550374 - 550389 + g 74 -9 -3.63073 | opp_overlap 550371 550368 AACCGAACAGGATCA CGCCAT CAAC ATGGCG TTGTTGCAGAATATG TERM 569 550868 - 550898 + r 88 -7 -5.15634 | opp_overlap 550868 CTGGCAGCATAGGAA TACCCTAACG AATTTTCTCAC CGTTAGGGTA TTTTTTACTGCGGTG YPK_0497 551447 - 550971 - | hypothetical protein TERM 570 551360 - 551370 + g 80 -6.8 -4.74706 | overlap 551367 TATCAGGTAATGGGA TGGC GAC GCCA TTTTTGGCTATTGCG TERM 571 551734 - 551695 - R 100 -26 -5.06016 | opp_overlap 551703 551705 AGGAGAGAAATAAAA TCACCACATACGGCTGGC GATA ACCAGCCGTATGTGGTGA TGGGGGAGGGATTAA TERM 572 551703 - 551726 + r 89 -12.5 -2.82516 | opp_overlap 551695, overlap 551705 AATAAAATCACCACA TACGGCTGG CGATAA CCAGCCGTA TGTGGTGATGGGGGA TERM 573 551705 - 551724 + r 79 -10.7 -2.96216 | opp_overlap 551695, overlap 551703 TAAAATCACCACATA CGGCTGG CGATAA CCAGCCG TATGTGGTGATGGGG YPK_0498 552132 - 551746 - | endoribonuclease L-PSP YPK_0499 552737 - 552270 - | aspartate carbamoyltransferase, regulatory subunit YPK_0500 553681 - 552746 - | aspartate carbamoyltransferase TERM 574 553794 - 553778 - R 100 -13.7 -6.06529 | GACAGACAAAAAAAA GCCCCTC AAC GAGGGGC CTTACAGGATCGGTT YPK_0501 554291 - 554019 - | phosphotransferase system, phosphocarrier protein HPr YPK_0502 555142 - 554288 - | hypothetical protein TERM 575 555221 - 555239 + r 74 -10.3 -2.60496 | overlap 555222 555224 TACAAACCGGGGTGT GGTGGGT GCGGA ACCCACC CTCTTTCGAGCCGCA YPK_0503 555930 - 555448 - | PTS IIA-like nitrogen-regulatory protein PtsN TERM 576 555959 - 555998 + r 100 -21.6 -2.88249 | opp_overlap 555967, overlap 555967 TAAGCGCTGTTTTAC GCCAGATACCGGTGGGAA TAAA TATCCACCGGTATCTGGC TATGTAGCGAGTGTA YPK_0504 556336 - 556049 - | sigma 54 modulation protein/ribosomal protein S30EA TERM 577 556180 - 556191 + g 74 -4.4 -4.88646 | CATTCACATGTACCG TTGC TTCT GCAA TTTGTTTTACTTTTT YPK_0505 557793 - 556360 - | RNA polymerase, sigma 54 subunit, RpoN TERM 578 556618 - 556608 - G 77 -6.8 -4.62336 | opp_overlap 556601 556608 ACTTCAGTTCAAAAA TCCC TCG GGGA CTGTGCAAGAATTTC YPK_0506 558580 - 557855 - | ABC transporter related YPK_0507 559132 - 558587 - | lipopolysaccharide transport periplasmic protein LptA YPK_0508 559679 - 559116 - | hypothetical protein YPK_0509 560239 - 559676 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YPK_0510 561862 - 560789 - | KpsF/GutQ family protein YPK_0511 562860 - 561886 - | CaCA family Na(+)/Ca(+) antiporter TERM 579 562458 - 562448 - G 70 -2.4 -4.9645 | overlap 562449 ATCAGAACAATAAAA GCGG CAG CAGC CAAGAGCAAGATGAC YPK_0512 563125 - 563943 + | ABC transporter related YPK_0513 564161 - 564943 + | hypothetical protein YPK_0514 564948 - 565505 + | hypothetical protein YPK_0515 565518 - 566141 + | toluene tolerance family protein TERM 580 566271 - 566247 - g 86 -12.2 -3.5764 | opp_overlap 566248 AACTGGATCGTGAAA CGCTGTTACC GCTTT GGCAACAGCG TGAAACCTTGCTGGC YPK_0516 566177 - 566479 + | putative anti-sigma B factor antagonist TERM 581 566518 - 566546 + F 84 -6.1 -5.04868 | gap 1, opp_overlap 566518 AGGTAAGATAATCAA GCTCCTGTGCAT AATGGC AT-CACAGGGGC TTTTCTTTAGTTTCA YPK_0517 566617 - 566880 + | BolA family protein YPK_0518 567034 - 568296 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 582 568356 - 568380 + T 100 -8.6 -5.59879 | opp_overlap 568356 TTCGGTAAATAAAAA TGCCAGCC GGTGATTGG GGCTGGCA TTTTTTATGTTTATA TERM 583 568380 - 568356 - T 100 -8.6 -5.27335 | opp_overlap 568356 TTCGGTAAATAAAAA TGCCAGCC GGTGATTGG GGCTGGCA TTTTTTATGTTTATA YPK_0519 569628 - 568477 - | periplasmic serine protease DegS TERM 584 569616 - 569642 + g 100 -15.2 -4.8543 | opp_overlap 569605, overlap 569617 AATAGCATGAGTTAG GCGGACACAGCA TCG TGCTGTGTCCGA TTTTTCTGCAAATTA TERM 585 569617 - 569641 + g 100 -18.7 -3.50535 | opp_overlap 569605, overlap 569616 ATAGCATGAGTTAGG CGGACACAGCA TCG TGCTGTGTCCG ATTTTTCTGCAAATT YPK_0520 571028 - 569655 - | protease Do TERM 586 570308 - 570336 + g 73 -9.7 -3.35992 | gap 1, opp_overlap 570310 AGCCGATACCGATAT TACCGCCA-CCT GGCGCA AGGATGGCGGTA TTAATTCCGATCAGT YPK_0521 571703 - 571299 - | hypothetical protein TERM 587 571728 - 571739 + H 71 -4.4 -4.7629 | TTTTTTGACTTCATT GTTC AGCA GAAC TTTTTCACTTAATAA YPK_0522 571848 - 571970 + | hypothetical protein YPK_0523 571927 - 573054 + | AFG1 family ATPase TERM 588 573109 - 573128 + F 81 -11.4 -2.76249 | AATGCTATTCTATGG CGGGCGAC ATTT GTCGTCCG TACTTAACATGTTTA TERM 589 573244 - 573220 - f 71 -8.8 -3.33162 | opp_overlap 573224, overlap 573224 GACCCCACGTTACAA CAAAGTTTTT TTCCC AAAAACTTTG ATAGTGCCAGCATTG TERM 590 573568 - 573551 - g 78 -5.5 -4.91712 | CTGAACGCAGAAAAA GTTGCTG TAAC CGGCAAC AAGCGTACAGACAAG YPK_0524 573368 - 573796 + | ribosomal protein L13 YPK_0525 573811 - 574203 + | ribosomal protein S9 TERM 591 574240 - 574256 + F 100 -13.7 -5.64274 | opp_overlap 574240 GATTGATGGTAAAAA CCCGGTG TCT CACCGGG TTTTTTTATGCCTGA TERM 592 574256 - 574240 - f 100 -13.7 -4.62783 | opp_overlap 574240 GATTGATGGTAAAAA CCCGGTG TCT CACCGGG TTTTTTTATGCCTGA YPK_0526 574577 - 575218 + | glutathione S-transferase domain-containing protein TERM 593 575720 - 575685 - g 73 -9.6 -3.41602 | gap 1, opp_overlap 575712 TTCACCGGATGATAA GCCGCCGCAACCGCCAC GGA GTGGTGGCCGCC-CGGC ATTACGCGTGGTTAA YPK_0527 575224 - 575739 + | stringent starvation protein B TERM 594 575773 - 575801 + T 70 -5.2 -4.51238 | gap 1, overlap 575778 ATACAGGCTCTATCT C-TTCAGGGCGGC GTTA GCCGCCCTTATCG TTTCTGTTTTGTGCG TERM 595 575778 - 575795 + T 100 -14.1 -3.69613 | overlap 575773 GGCTCTATCTCTTCA GGGCGGC GTTA GCCGCCC TTATCGTTTCTGTTT YPK_0528 576377 - 575892 - | hypothetical protein TERM 596 576834 - 576808 - R 72 -7.2 -3.9749 | gap 1, overlap 576809 AGGCAGAAGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCCCCAGGGAAG TERM 597 576909 - 576947 + r 71 -6.7 -4.23647 | gap 1, opp_overlap 576915, overlap 576900 CACTTTGTCAATAAC CTCAAAGGGCGGGTTC TGTGAATT GAACCCGCCCTA-GCG TTTATTGAATGATTT TERM 598 576942 - 576915 - R 100 -14.2 -3.72051 | opp_overlap 576909 576900 GTCAATAACCTCAAA GGGCGGGTTC TGTGAATT GAACCCGCCC TAGCGTTTATTGAAT YPK_0529 578395 - 576977 - | glutamate synthase, small subunit TERM 599 578243 - 578278 + g 79 -9.6 -3.89695 | opp_overlap 578237 578254 TTCACAGTACGGATT GCCGCAGGACAGGCAG CGAT CGGCCTGTGCTTTGGC TTGTGTTTCTGAGAA YPK_0530 582862 - 578405 - | glutamate synthase (ferredoxin) TERM 600 582116 - 582138 + g 73 -9.8 -3.33419 | overlap 582115 582111 582130 GGCACGCGCCTTGGC CCATTGGCGG TTA CCGGCGATGG TGTTGATTTCGCCGT TERM 601 584301 - 584291 - g 77 -6.8 -4.60924 | opp_overlap 584296 GAAACCTTGGAAAAA GTGG TCA CCAC CGGTGTTGATGGGAT YPK_0531 583619 - 584608 + | putative radical SAM protein YPK_0532 584643 - 584861 + | hypothetical protein YPK_0533 584892 - 587228 + | multi-sensor hybrid histidine kinase TERM 602 587249 - 587226 - f 100 -8.8 -5.81032 | overlap 587229 GAAGTTGAAAAAAAA TAACCCCGAC CGAG GCCGGGGTGA GCGAAGACTGCGCCA TERM 603 587246 - 587229 - f 100 -10.5 -4.96028 | overlap 587226 GTTGAAAAAAAATAA CCCCGAC CGAG GCCGGGG TGAGCGAAGACTGCG YPK_0534 587470 - 588123 + | ThiJ/PfpI domain-containing protein YPK_0535 588120 - 588845 + | monofunctional biosynthetic peptidoglycan transglycosylase TERM 604 588979 - 589024 + T 71 -6.8 -4.11363 | opp_overlap 588988, overlap 589019 GGTATCGATGTGGTA GATAAAAAACGGGCTTGGCG GTTTAG CGCTAAGCCCGTGATAAATC TTATTTAATCTTCTT TERM 605 589015 - 588988 - T 100 -12.7 -5.36441 | opp_overlap 588979 GTGGTAGATAAAAAA CGGGCTTGGCG GTTTAG CGCTAAGCCCG TGATAAATCTTATTT YPK_0536 589627 - 589052 - | transport-associated TERM 606 589485 - 589527 + g 85 -7.6 -4.82901 | CTGGCTTCCAGTGTG CCGTCATCTACCTGCGTACC GAT GGTACGTGGATCCGTGGCGG TTTTTGTGGCAACCG YPK_0537 590228 - 589638 - | phosphoheptose isomerase TERM 607 590410 - 590424 + r 77 -5 -5.00642 | opp_overlap 590410 TAAATGCTGTTCAAA TTGGTT CCA GACCAA TTTTTCTCTCGCTTG YPK_0538 590852 - 590499 - | hypothetical protein TERM 608 590624 - 590587 - G 73 -7.9 -4.07885 | gap 3, opp_overlap 590580 590612 590618, overlap 590615 GATGTTGTGGCAAAA CTGGC-GCCGC-GTTGTG CCAGC CA-AACAGCGGCGGCCAG ATGTAGCCGTTGTTG TERM 609 590772 - 590738 - G 79 -10 -3.82824 | CATCACGCATAATAA GGTCAATTTCGCCTCC ACG GAAGGCAACATTGGCC GCTTGAAAAACGAGA TERM 610 590795 - 590783 - G 71 -4.8 -4.56597 | opp_overlap 590788, overlap 590786 590788 TGGCCGCTTGAAAAA CGAG ACCTG CTCG CTCCAGATGGCGACG YPK_0539 592924 - 590951 - | LppC family lipoprotein TERM 611 592571 - 592581 + g 76 -8.2 -4.03995 | opp_overlap 592567 592566, overlap 592569 GGCAAGAATATCAGC CGCC GCT GGCG TATTTTTCTGCGCGA TERM 612 592922 - 592940 + g 79 -2.5 -5.42259 | gap 1, opp_overlap 592922, overlap 592924 GAATGTTGAGGAAAG CAT-ACTG TATC CAGTGATG TTTTTTTCAAGATGC TERM 613 593789 - 593773 - g 88 -7.2 -5.02074 | overlap 593774 TTACCGCTGAAAAAA GCCGCC GCATT AGCGGC AGAAATTCATGGAGT TERM 614 593791 - 593774 - g 77 -10.5 -3.60762 | overlap 593773 TACCGCTGAAAAAAG CCGCCGC ATTA GCGGCAG AAATTCATGGAGTCA YPK_0540 592987 - 593886 + | uroporphyrin-III C/tetrapyrrole methyltransferase TERM 615 594291 - 594316 + T 83 -11.9 -2.73124 | opp_overlap 594296 594297, overlap 594297 ACTCCACTCATTCCA CAAAATCCCGC TTCG GCGGGTTTTTG CTTTGCACGATAGGG TERM 616 594311 - 594296 - T 70 -6 -4.40358 | opp_overlap 594291 594297, overlap 594297 ACTCATTCCACAAAA TCCCGC TTCG GCGGGT TTTTGCTTTGCACGA TERM 617 594310 - 594297 - T 72 -9.5 -3.23733 | opp_overlap 594291 594297, overlap 594296 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCACG TERM 618 594297 - 594310 + T 100 -9.5 -4.98531 | opp_overlap 594297 594296, overlap 594291 CTCATTCCACAAAAT CCCGC TTCG GCGGG TTTTTGCTTTGCACG TERM 619 594404 - 594429 + T 83 -11.9 -2.73124 | opp_overlap 594409 594410, overlap 594410 ACGCCACTCATGCCA CAAAATCCCGC TTTG GCGGGTTTTTG CTTTGCACGATAGGG TERM 620 594424 - 594409 - T 70 -6 -4.40358 | opp_overlap 594404 594410, overlap 594410 ACTCATGCCACAAAA TCCCGC TTTG GCGGGT TTTTGCTTTGCACGA TERM 621 594423 - 594410 - T 72 -9.5 -3.23733 | opp_overlap 594410 594404, overlap 594409 CTCATGCCACAAAAT CCCGC TTTG GCGGG TTTTTGCTTTGCACG TERM 622 594410 - 594423 + T 100 -9.5 -4.98531 | opp_overlap 594409 594410, overlap 594404 CTCATGCCACAAAAT CCCGC TTTG GCGGG TTTTTGCTTTGCACG YPK_0541 595188 - 594484 - | pirin domain-containing protein YPK_0542 595450 - 596343 + | LysR family transcriptional regulator TERM 623 596403 - 596428 + T 75 -8.9 -3.6284 | AACGTTCGCTTGCTA CGCCCTTGGCC TTGG GGAAAAGGGCG TTTAGCGTGCTAATT YPK_0543 597460 - 596474 - | putative glutathione S-transferase TERM 624 597502 - 597480 - R 100 -8.5 -5.40072 | opp_overlap 597501 TCCCCCTTAAAAAAA TACCCTACC GGATG GATAGGGTA TCGCTGATATTAACT YPK_0544 597941 - 597546 - | DoxX family protein YPK_0545 598529 - 598245 - | hypothetical protein YPK_0546 598921 - 598526 - | hypothetical protein YPK_0547 599229 - 598924 - | protein of unknown function DUF883 ElaB YPK_0548 599764 - 599384 - | hypothetical protein TERM 625 599958 - 599985 + r 91 -12 -3.4759 | overlap 599959 TGAGAGGAACGAGTT TGATACGGGGAG TCGA CTCCCCGTAGCG TTGATTATCCTAAGT TERM 626 599959 - 599984 + r 93 -13.3 -2.68072 | overlap 599958 GAGAGGAACGAGTTT GATACGGGGAG TCGA CTCCCCGTAGC GTTGATTATCCTAAG YPK_0549 600379 - 599990 - | hypothetical protein YPK_0550 601074 - 600376 - | SNARE associated Golgi protein YPK_0551 601884 - 601351 - | putative lipoprotein YPK_0552 602927 - 602133 - | regulatory protein GntR HTH TERM 627 603106 - 603139 + r 79 -11.1 -3.2115 | opp_overlap 603108 603113, overlap 603108 603113 GCGGATAACAGGAGA GATGAAAGCCCGATA AATT TACCGGGCTTTCATG TTAGTAGGTCATTTA TERM 628 603137 - 603108 - R 100 -15.9 -3.02381 | opp_overlap 603106 603108 603113, overlap 603113 GGATAACAGGAGAGA TGAAAGCCCGATA AATT TACCGGGCTTTCA TGTTAGTAGGTCATT TERM 629 603108 - 603137 + r 100 -13.7 -3.16264 | opp_overlap 603108 603113, overlap 603106 603113 GGATAACAGGAGAGA TGAAAGCCCGATA AATT TACCGGGCTTTCA TGTTAGTAGGTCATT TERM 630 603132 - 603113 - R 84 -10 -3.90358 | opp_overlap 603108 603106 603113, overlap 603108 ACAGGAGAGATGAAA GCCCGATA AATT TACCGGGC TTTCATGTTAGTAGG TERM 631 603113 - 603132 + r 74 -7.8 -3.95022 | opp_overlap 603113 603108, overlap 603108 603106 ACAGGAGAGATGAAA GCCCGATA AATT TACCGGGC TTTCATGTTAGTAGG YPK_0553 604494 - 603190 - | d-galactonate transporter YPK_0554 605239 - 606648 + | glucuronate isomerase TERM 632 607834 - 607805 - g 71 -2.9 -5.00616 | gap 1 GCTTTGTGGAAAAAA CCATTA-CGGAAGA GAT TGTTCCGGTATTGG ATCTGCCCGAAGACG YPK_0555 606847 - 608298 + | mannitol dehydrogenase domain-containing protein YPK_0556 608309 - 609799 + | Altronate dehydratase TERM 633 609849 - 609890 + F 75 -8.7 -3.63559 | gap 1, opp_overlap 609850, overlap 609847 609850 CTGTTTTTTATGGAA ACGCACTTCCCCTTCACACT TTA AGC-TGTAGGGGGAGTGCGC TGTTTGCTTATTAAT TERM 634 609889 - 609850 - f 93 -12.2 -3.64703 | gap 1, opp_overlap 609849 609847 609850 TGTTTTTTATGGAAA CGCACTTCCCCTTCACACT TTA AGC-TGTAGGGGGAGTGCG CTGTTTGCTTATTAA TERM 635 609850 - 609889 + F 83 -12.2 -2.77051 | gap 1, opp_overlap 609850, overlap 609849 609847 TGTTTTTTATGGAAA CGCACTTCCCCTTCACACT TTA AGC-TGTAGGGGGAGTGCG CTGTTTGCTTATTAA YPK_0557 609952 - 610482 + | hypothetical protein TERM 636 610524 - 610499 - T 100 -9.8 -5.88565 | opp_overlap 610499 TTGATAACAAAAAAA TGCCAGTCAA ACTTGA CTGACTGGCA TTTTGCGTAGGTAAA TERM 637 610499 - 610524 + T 83 -9.1 -4.19817 | opp_overlap 610499 TTGATAACAAAAAAA TGCCAGTCA AACTTGAC TGACTGGCA TTTTGCGTAGGTAAA YPK_0558 611868 - 610549 - | sodium:dicarboxylate symporter TERM 638 610896 - 610910 + g 70 -10 -3.17051 | overlap 610894 GCACCGTGATGGTGA TGGCTG CAC CAGCCA TATTGATGGTGGCAC TERM 639 611984 - 612009 + r 76 -6.9 -4.44667 | gap 1 TGACTTTGGGTATAG CGCTCAAGCC GGAACGA GGC-TGAGCG TTTATTGTTCACACC TERM 640 612220 - 612199 - R 70 -3.7 -4.85653 | gap 1, opp_overlap 612218, overlap 612200 612201 TATATACAAAATAAA TGTGGGGCTA TGG TAGCCCCG-A TCGATAGATTGTAGT YPK_0559 613335 - 612340 - | oxidoreductase domain-containing protein YPK_0560 614047 - 613538 - | hypothetical protein TERM 641 614259 - 614287 + r 73 -5.9 -4.431 | opp_overlap 614264, overlap 614262 GGATTAGCGGTCTGT CAATACCTGCACC ATA GGCACAGGTATCG TTTTATCAATGGATA YPK_0561 617296 - 614303 - | outer membrane autotransporter TERM 642 616770 - 616788 + g 74 -3.8 -4.8543 | opp_overlap 616770 GAAACATAGAGAATA CCATTATC ACC GACAGTGG TTTTTGTGGCACTTC TERM 643 617015 - 617005 - G 71 -4 -4.74103 | opp_overlap 617005 CTTTTAACGTAAAAA TACT GCC AGTA TTAACGGCCGTATGC TERM 644 617666 - 617684 + H 100 -14.6 -3.54459 | opp_overlap 617680 617681 CTTGCGGTGTGGGTT CGCGCTTG GCA CAAGCGCG TTTAAAACGCATTAA YPK_0562 617771 - 618958 + | rRNA (guanine-N(2)-)-methyltransferase TERM 645 618967 - 618998 + T 100 -15.2 -3.85879 | overlap 618993 TTTCTAATCGGTATT TCACAGGGTGGGGT TTTC GCCACACCCTGTGA TTATTCTCAGTTCTA YPK_0563 621095 - 619074 - | NADH:flavin oxidoreductase/NADH oxidase TERM 646 621137 - 621178 + r 82 -3 -5.4756 | gap 2 ACCATTATTGTTATA TCTCCGCCG-CC-CTTACTG AATC CAGCAAGTGGTCGGATGAGA TTTTTTATTCAAATT YPK_0564 621877 - 621308 - | hypothetical protein YPK_0565 623744 - 622245 - | putative kinase protein TERM 647 623700 - 623714 + g 74 -6.4 -4.4648 | CTCGTCAACGTACTG GATGGT TTC GCCATC TTTTGTCGTACAGGT YPK_0566 625524 - 623776 - | hypothetical protein YPK_0567 626564 - 625524 - | von Willebrand factor type A TERM 648 626662 - 626628 - R 100 -8.6 -5.626 | opp_overlap 626631, overlap 626631 GATGCGACAAAAAAA TAAGGCAAAGCGCC GTGAATG GGGGCTTTGCCTTT AAATTACAGTACCAA TERM 649 626631 - 626659 + r 86 -10.3 -3.76125 | opp_overlap 626631 626628 GCGACAAAAAAATAA GGCAAAGCGCC GTGAATG GGGGCTTTGCC TTTAAATTACAGTAC TERM 650 626659 - 626631 - R 100 -10.3 -4.89054 | opp_overlap 626631, overlap 626628 GCGACAAAAAAATAA GGCAAAGCGCC GTGAATG GGGGCTTTGCC TTTAAATTACAGTAC YPK_0568 627367 - 626666 - | von Willebrand factor type A YPK_0569 627947 - 627306 - | stress protein YPK_0570 628618 - 627980 - | von Willebrand factor type A TERM 651 629511 - 629521 + G 73 -2.4 -5.04987 | overlap 629491 ATGTGCGCTTATCTG CGCC CTC GGCC TTTTTTAGACGTATT TERM 652 629770 - 629758 - g 74 -9.1 -3.6959 | overlap 629760 ACAGCAGGATTTAAA CAGCG GCA CGCTG GCGCTAAACGTCGTG TERM 653 630028 - 630009 - g 100 -9.2 -4.74706 | GGCAACAGCGAAAAA TGTGGCGG CTGG CCGCCTCA CTGGATGATTCGGGT YPK_0571 629333 - 631021 + | polypeptide-transport-associated domain-containing protein TERM 654 632338 - 632311 - gf 78 -9 -3.83205 | overlap 632312 ACCCTTGATATTAAA GCCCGTGGGCAG CTAA CCGCCCAAGGGA AAAATATTAGCGGCA TERM 655 632337 - 632312 - gf 89 -12.5 -2.89602 | overlap 632311 CCCTTGATATTAAAG CCCGTGGGCAG CTAA CCGCCCAAGGG AAAAATATTAGCGGC YPK_0572 631066 - 633042 + | filamentous haemagglutinin outer membrane protein YPK_0573 633011 - 633367 + | hypothetical protein YPK_0574 633374 - 633679 + | hypothetical protein TERM 656 633711 - 633683 - f 70 -3.8 -4.75174 | overlap 633684 633686 GATTTAATCTAAAAA TGAGATCCCAGC TCTAC ACTGGGATCTGC CAAAGGGCTGGTCTC TERM 657 633708 - 633686 - f 76 -9.9 -3.28592 | overlap 633684 633683 TTAATCTAAAAATGA GATCCCAGC TCTAC ACTGGGATC TGCCAAAGGGCTGGT TERM 658 636045 - 636063 + G 74 -9.5 -3.55444 | opp_overlap 636044 CACTGAGTACATTAG CCGCCGG GCTGG CCGGTGG TTTGACAGGTGACAG TERM 659 636945 - 636935 - g 71 -4.6 -4.55023 | GTCAATACTACAAAA GCCC AAT GGAC AGAAATAAATCGGGC YPK_0575 633782 - 637015 + | hypothetical protein YPK_0576 637017 - 637550 + | hypothetical protein YPK_0577 637676 - 639475 + | putative adhesin YPK_0578 639472 - 639705 + | hypothetical protein YPK_0579 639977 - 640198 + | hypothetical protein YPK_0580 640158 - 640292 + | hypothetical protein YPK_0581 640294 - 640710 + | hypothetical protein TERM 660 640982 - 640994 + G 77 -10.5 -3.50393 | GATCTCCCTGACGCT CCCGC GCA GCGGG TTGTATCAGCTCAAG YPK_0582 640743 - 641540 + | putative adhesin/hemolysin TERM 661 641936 - 641894 - T 100 -13.7 -4.60797 | gap 2, opp_overlap 641934, overlap 641898 641899 641934 TTGGCAGATACAAAA GCAAGCTCCTACCGCTGCACT CGG AGTACAGCGGTAGGAA-T-GC CGTCAGCGGCCTAAG TERM 662 641934 - 641898 - T 100 -16.7 -3.80768 | overlap 641894 641899 CAGATACAAAAGCAA GCTCCTACCGCTGCACT CGG AGTACAGCGGTAGGAAT GCCGTCAGCGGCCTA TERM 663 641933 - 641899 - T 100 -20.2 -2.87377 | overlap 641898 641894 AGATACAAAAGCAAG CTCCTACCGCTGCACT CGG AGTACAGCGGTAGGAA TGCCGTCAGCGGCCT YPK_0583 644284 - 641999 - | outer membrane autotransporter YPK_0584 645339 - 644344 - | hypothetical protein YPK_0585 646820 - 645441 - | hypothetical protein TERM 664 646182 - 646194 + g 80 -4.1 -5.24129 | ATCAACGAAGTAGCC CAGTG ACG CATTG TTTTTTGTCGACCAA TERM 665 647193 - 647209 + G 72 -10.9 -2.60283 | opp_overlap 647191 647190, overlap 647192 647190 647195 AATATATCCAAACGG CATGCAG GTT CTGCATG ATATTAATTTGGATA TERM 666 647266 - 647290 + G 76 -11.5 -2.79023 | opp_overlap 647276, overlap 647264 GTTGGCCCCTCTGGC TGCGCAAAATC AAC GATGTTGCGCA TGATTGCTGGCCTTG YPK_0586 647146 - 648261 + | ABC transporter related YPK_0587 648344 - 651697 + | hypothetical protein TERM 667 651770 - 651754 - f 72 -6.5 -4.36914 | opp_overlap 651754 TGTGGCGCTACAAAA GCCTGAG TGG CTCATGC TATAGTAAATTCCTT YPK_0588 651806 - 652792 + | LacI family transcription regulator YPK_0589 652869 - 654113 + | extracellular solute-binding protein YPK_0590 654167 - 655048 + | binding-protein-dependent transport systems inner membrane component TERM 668 655566 - 655579 + G 79 -2.3 -5.42259 | overlap 655567 655577 CAGGATCGATGGCGC AGGTG AATT CACCA TTTTTTTCAAGGTGG YPK_0591 655048 - 655866 + | binding-protein-dependent transport systems inner membrane component TERM 669 656223 - 656239 + G 82 -12.3 -3.10164 | opp_overlap 656213 656210 ATTGATACCCGCTTC GTTGCCG AAG CGGCAAC TTGCCTGCTGGCTCG YPK_0592 655866 - 656378 + | hypothetical protein TERM 670 657149 - 657162 + G 71 -4.5 -4.64766 | overlap 657150 GAGGCAGGCGTTGGC TCGGT GATG ACCGG TTTTTGCGATCTCGG TERM 671 657750 - 657728 - g 70 -9.9 -3.18383 | gap 1 ATGTCGATCTATCAA TCCCTCTGCG CTAT CGCAG-GGGA GGTTAAGGTGATCAC YPK_0593 656429 - 658612 + | glycoside hydrolase family 3 protein YPK_0594 660202 - 658676 - | outer membrane efflux protein YPK_0595 662108 - 660207 - | fusaric acid resistance protein region YPK_0596 663141 - 662092 - | secretion protein HlyD family protein YPK_0597 663486 - 663151 - | hypothetical protein TERM 672 663391 - 663420 + g 74 -6.3 -4.39287 | opp_overlap 663391 CGCTATAGCCGATAA CAGGATCAATGGC CCAC GCCATAGCGCCTG TTTTGCTGTCGTTAA YPK_0598 663683 - 663483 - | hypothetical protein TERM 673 664540 - 664524 - g 79 -2.2 -5.44721 | opp_overlap 664524 AGCAGTGTAAAAAAA GCGG ATGTTGGTA CCGC TGTATTGGATCTCAT YPK_0599 664449 - 665681 + | aminotransferase class I and II TERM 674 665724 - 665734 + G 76 -2.4 -5.25699 | opp_overlap 665715 665714 AAATATGGCATTACT GCCG ATG CTGC TTTTTATTGTGTCGT YPK_0600 665674 - 667125 + | Na+/H+ antiporter NhaC YPK_0601 667138 - 667575 + | hypothetical protein TERM 675 667920 - 667910 - g 71 -4 -4.7497 | CTTATCCATGAAAAA TCTT GGG AAGA ACGTGATTTTATCAT YPK_0602 667709 - 668341 + | YheO domain-containing protein YPK_0603 668352 - 668732 + | endoribonuclease L-PSP TERM 676 669053 - 669069 + G 71 -2.9 -4.91511 | CCCGAGACGATGTAC CCCAGTG TGC CATTCGG TTTTTCTCATGCGGT TERM 677 669290 - 669315 + G 78 -6.1 -4.82901 | TCACCGGCGAATTTG GCCGCAATTTG CGCA CAAATCGGGGC TTTTTATGAGGGCGC YPK_0604 669017 - 669421 + | endoribonuclease L-PSP YPK_0605 669938 - 669636 - | putative mono-oxygenase ydhR YPK_0606 670914 - 670198 - | putative protein-disulfide isomerase YPK_0607 671076 - 672008 + | LysR family transcriptional regulator YPK_0608 672399 - 673013 + | filamentation induced by cAMP protein Fic YPK_0609 673168 - 673010 - | hypothetical protein TERM 678 673053 - 673068 + g 74 -4 -5.00616 | TGTGCCAGATTTTGT TTGAGT TGCT GCTCAA TTTTTTGCACAGAAA YPK_0610 673347 - 674525 + | HNH endonuclease YPK_0611 674534 - 675064 + | hypothetical protein TERM 679 675142 - 675120 - g 76 -10 -3.63744 | opp_overlap 675123, overlap 675118 CGTGTTGGGAAAATA TTAGGGTATA TGA TACACCCTAA ATTCACGGGACATGT YPK_0612 675078 - 675551 + | hypothetical protein YPK_0613 675604 - 676206 + | putative phage terminase, small subunit TERM 680 676414 - 676444 + F 100 -9.8 -4.93877 | opp_overlap 676417, overlap 676417 TATCCCAGAAATAAC AAAGGAGTTACGCT ATT AACGTAACTCCTTG TTTTATTTGGTGGCC TERM 681 676417 - 676441 + F 100 -11.5 -4.56436 | opp_overlap 676417, overlap 676414 CCCAGAAATAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 682 676441 - 676417 - f 100 -13.7 -4.63048 | opp_overlap 676417 676414 CCCAGAAATAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG YPK_0614 676659 - 678089 + | integrase family protein YPK_0615 678089 - 678817 + | hypothetical protein YPK_0616 678961 - 679158 + | hypothetical protein TERM 683 679447 - 679418 - g 73 -7.8 -4.09685 | overlap 679435 CGTTATTGCGGAAAA TTTGAGCACGCC AAAACG GGCGAGCGCAAA ATCTCGCCAACAGGT YPK_0617 679173 - 679976 + | AntA/AntB antirepressor domain-containing protein TERM 684 680001 - 679984 - g 100 -10.5 -5.27476 | CTGAATAAAACAAAA GCGGCCC TGCA AGGCCGC CAATGTAACTACAAA TERM 685 680135 - 680109 - g 82 -11.6 -3.4252 | opp_overlap 680110 680114, overlap 680095 680110 GTGCATCGATTATAA GTTAACCGCGCC ATT GGCGCAGTTAAT TCGATATGCGCGCAT TERM 686 680110 - 680134 + G 84 -12.9 -3.12351 | opp_overlap 680109 680095 680110, overlap 680114 TGCATCGATTATAAG TTAACCGCGCC ATT GGCGCAGTTAA TTCGATATGCGCGCA TERM 687 680134 - 680110 - g 95 -15.1 -2.65298 | opp_overlap 680110 680114, overlap 680109 680095 TGCATCGATTATAAG TTAACCGCGCC ATT GGCGCAGTTAA TTCGATATGCGCGCA YPK_0618 679966 - 680598 + | hypothetical protein YPK_0619 680644 - 681051 + | hypothetical protein YPK_0620 681044 - 681418 + | hypothetical protein YPK_0621 681411 - 681605 + | hypothetical protein TERM 688 682524 - 682535 + G 73 -7.2 -4.30043 | overlap 682507 682521 GAAGCGGCGGTATAT CCCG GCGT CGGG TTATTTTCAATTTCT YPK_0622 681605 - 683038 + | P4 family phage/plasmid primase TERM 689 683107 - 683135 + F 71 -9.7 -2.63301 | gap 1, opp_overlap 683105, overlap 683063 683062 AACATGTAGTTAATG GGTGGAGAC-CT TTAAAT AGAGTCTCCACC TAGTCTCCACCTCTC TERM 690 683670 - 683648 - g 71 -4.9 -4.55887 | overlap 683650 CGTGAAAAAGAGAAA CTGGAAAAA CTCGT TTTTTCCGG TGACGTGGTGATGTT YPK_0623 683417 - 684871 + | hypothetical protein YPK_0624 684871 - 685314 + | hypothetical protein TERM 691 685356 - 685375 + T 95 -4.9 -5.79588 | opp_overlap 685355 685356 CATCGATCAATCAAG GCCACCG CCAGAA CAGTGGC TTTTTTTGGTTTTGG YPK_0625 685945 - 685397 - | hypothetical protein YPK_0626 686112 - 686288 + | hypothetical protein YPK_0627 686292 - 686642 + | hypothetical protein YPK_0628 686639 - 687436 + | hypothetical protein YPK_0629 687458 - 687979 + | hypothetical protein TERM 692 688218 - 688235 + F 75 -8.5 -3.74178 | opp_overlap 688206 688218, overlap 688218 AAGTTGACAGAAAAA GTGTCAA GCGG TTGACAC TTTACACTTTGATTG TERM 693 688235 - 688218 - f 100 -8.5 -4.98522 | opp_overlap 688218 688218, overlap 688206 AAGTTGACAGAAAAA GTGTCAA GCGG TTGACAC TTTACACTTTGATTG TERM 694 688696 - 688708 + G 73 -10.5 -3.14745 | overlap 688694 688696 CCACCTGTGACATTT GGCGG CTA CCGCC TGTCTATTGTCGAAA YPK_0630 688315 - 688899 + | hypothetical protein TERM 695 688943 - 688960 + F 91 -4.8 -5.64006 | CAATCTCCAACCTTT GCCAGC CTCAGT GTTGGC TTTTTTTACTTCAAT YPK_0631 689126 - 689434 + | hypothetical protein TERM 696 689460 - 689480 + T 100 -7.6 -5.72622 | opp_overlap 689460 TATCAAAACGCCAAA GCATCAGA TTTGT TCTGGTGC TTTTTTATTTCTGCG YPK_0632 689768 - 689529 - | putative excisionase YPK_0633 690045 - 690734 + | hypothetical protein TERM 697 690846 - 690876 + T 100 -9.8 -4.93877 | opp_overlap 690849, overlap 690849 TATCCCAGAAACAAC AAAGGAGTTACGCT ATT AACGTAACTCCTTG TTTTATTTGGTGGCC TERM 698 690873 - 690849 - T 100 -13.7 -4.63048 | opp_overlap 690846 690849 CCCAGAAACAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 699 690849 - 690873 + T 100 -11.5 -4.56436 | opp_overlap 690849, overlap 690846 CCCAGAAACAACAAA GGAGTTACGCT ATT AACGTAACTCC TTGTTTTATTTGGTG TERM 700 691133 - 691109 - T 100 -11.5 -5.90981 | opp_overlap 691109 TTATAGGAAAAAAAA TCCCGACACAT ATA ATATGCCGGGA TTTTTATTACTTCAC TERM 701 691109 - 691133 + T 90 -7.1 -5.1963 | opp_overlap 691109 TTATAGGAAAAAAAA TCCCGACACAT ATA ATATGCCGGGA TTTTTATTACTTCAC YPK_0634 692994 - 691156 - | RNA polymerase, sigma 70 subunit, RpoD TERM 702 692259 - 692284 + g 77 -3.1 -5.24551 | overlap 692260 GCTTCAGAATTTCAG CGGCAGCATTC GCGT GATTGCGGCCA TTTTTCTTGATTTCC TERM 703 693104 - 693123 + r 81 -9.3 -3.87869 | GCTATAGCGGCATAT TGTGGGG AGTTGC CCCCACA TTTATCGGCAATTAA YPK_0635 694900 - 693152 - | DNA primase TERM 704 693310 - 693300 - G 74 -6.8 -4.37092 | overlap 693302 AGCGTGTCGACAAAA GTCG GTT CGAC CATATCCTCTACAAT TERM 705 694935 - 694962 + r 76 -11.2 -2.55668 | opp_overlap 694935, overlap 694934 CATAAACGAGAACAA GCCGCGCATTCC TTTC GGAAAGCACGGC CTTCGTATGCAACTA TERM 706 694962 - 694935 - R 100 -13.4 -3.94823 | opp_overlap 694935 694934 CATAAACGAGAACAA GCCGCGCATTCC TTTC GGAAAGCACGGC CTTCGTATGCAACTA YPK_0636 695251 - 695036 - | ribosomal protein S21 TERM 707 696632 - 696646 + G 71 -9.2 -3.551 | TTGAGTGTGTCGGTG CGGCCG CGG TGGCCG TTATCTGAGTTACCG YPK_0637 695657 - 696670 + | glycoprotease family metalloendopeptidase TERM 708 696690 - 696709 + T 76 -10.7 -2.72661 | overlap 696679 AATGGCTGAGCGTGG CTGCGGC TGTGTT GCCGCAG TCATTCAAAATACTC TERM 709 696722 - 696744 + T 76 -2.7 -5.33921 | gap 1, opp_overlap 696722, overlap 696724 696725 CAGTCATTCAAAATA CTCA-TGGAC AAGA GTCCACTGCG TTTTTTCATTCCTTT TERM 710 696767 - 696825 + T 79 -11.1 -3.06696 | gap 1, overlap 696809 696816 ATTCCTTTGCGCCTT GCCTCGCTCATGCTCAGTCATTCTGATA GGGG TGTC-GAATGGCTGGGCGTGGCTGTGGC TGTGTTGCCGCAGCC TERM 711 696809 - 696848 + T 100 -12.1 -4.07885 | overlap 696767 696816 AGGGGTGTCGAATGG CTGGGCGTGGCTGTGGC TGTGTT GCCGCAGCCATTCTCGG TTTTGGGGAAAACTA TERM 712 696816 - 696841 + T 100 -12.6 -3.52113 | overlap 696767 696809 TCGAATGGCTGGGCG TGGCTGTGGC TGTGTT GCCGCAGCCA TTCTCGGTTTTGGGG YPK_0638 697511 - 696861 - | hypothetical protein YPK_0639 697619 - 697978 + | dihydroneopterin aldolase TERM 713 698188 - 698210 + F 100 -8.4 -5.77632 | opp_overlap 698188 AAATTCTAAATAGAA CGGCACTGTT TTC AGCATTGCCG TTTTTTTGTGGTTTT YPK_0640 698252 - 699070 + | undecaprenol kinase TERM 714 699287 - 699269 - T 75 -8.8 -3.58343 | opp_overlap 699249 GGCAGGAGTCTGAAA CCCCTTGT TTT ACAGGGGG AAACGAACGGGGAGT YPK_0641 700544 - 699306 - | polynucleotide adenylyltransferase/metal dependent phosphohydrolase TERM 715 700136 - 700114 - G 100 -12.7 -4.21275 | overlap 700125 CCAAGGTAGGCAAAA CGGGCGGCA AAGCG TGCCACCCG CAGAACGCGCAATGG YPK_0642 701324 - 700704 - | SH3 domain-containing protein TERM 716 702410 - 702426 + G 73 -5.1 -4.64657 | overlap 702399 702412 CGCTTTGGCTATGGT TCGCCAA TCG TTGGCTA TTTTTGGCGGTTTGG TERM 717 702412 - 702424 + G 70 -7.7 -3.9318 | overlap 702399 702410 CTTTGGCTATGGTTC GCCAA TCG TTGGC TATTTTTGGCGGTTT YPK_0643 701628 - 702935 + | adenylate cyclase TERM 718 705575 - 705535 - g 81 -11.2 -3.73224 | gap 1 CTATTCGCCAGCAAA TTCTCTGCCGCCACCGCGA AGAT CCGCAGTTGCAGCAG-GAA GTCCGCGAAATGCGG YPK_0644 703107 - 705962 + | (glutamate--ammonia-ligase) adenylyltransferase TERM 719 706287 - 706300 + G 70 -9.5 -3.18681 | ATATTGCCTCCCTTG GCGCG GTTG CGCGC TTAGTCGGGTTGACC TERM 720 706434 - 706415 - g 70 -7.9 -3.80573 | CCGACCATTACCAAA TTACGGG TACTTT CCCGTAA CCAGCAGTTAATCCG YPK_0645 706097 - 707527 + | rfaE bifunctional protein TERM 721 707549 - 707532 - f 86 -12.7 -2.52464 | GCCGCGGCTAAGTCA GCGCCAG AGCG CTGGCGC ATAAGGATGTGGCAG TERM 722 707621 - 707639 + G 75 -5.2 -4.8048 | overlap 707622 GGGTTGTTATCCACT TCCCTGTT GGG GACGGGGG TTTTTGCTGTGCCAG YPK_0646 707564 - 708814 + | amino acid permease-associated region TERM 723 708934 - 708960 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 708923, overlap 708929 708935 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 724 708935 - 708961 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 708923, overlap 708929 708934 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPK_0647 709420 - 709139 - | hypothetical protein YPK_0648 709653 - 709456 - | hypothetical protein YPK_0649 709990 - 710643 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase YPK_0650 711102 - 711884 + | extradiol ring-cleavage dioxygenase class III protein subunit B TERM 725 712130 - 712166 + T 74 -10.3 -2.57564 | opp_overlap 712139, overlap 712129 712134 712138 GGCAATGACTTTGGG TATGGTAAAGGAAGGTG CAT TGCCTTCCCTTACTATA ATTATCCCAAAATAA YPK_0651 713328 - 712168 - | glutathionylspermidine synthase TERM 726 713108 - 713133 + g 71 -4.7 -4.58283 | overlap 713106 GGGATACGGCACTTG GTCAGTAACTG ATCG CTGTTAATGAC TTTTTCAACCACTTG TERM 727 713342 - 713363 + r 73 -7.3 -4.23723 | gap 1 ATTAATCAGCCTTAG CCACC-CATG CTA CGTGTGGTGG TTTTGGATGATGTTG YPK_0652 714024 - 713338 - | hypothetical protein YPK_0653 714090 - 714260 + | hypothetical protein TERM 728 714292 - 714258 - T 100 -10.6 -5.09895 | overlap 714262 GAGGGAGGCAAAAAA TAAACCGGGCGCAGCC AAT GACTGTGCCCGGTGAA GCCAAACCGCTGACG TERM 729 714288 - 714262 - T 100 -15.8 -5.0666 | overlap 714258 GAGGCAAAAAATAAA CCGGGCGCAGCC AAT GACTGTGCCCGG TGAAGCCAAACCGCT YPK_0654 715719 - 714325 - | TolC family type I secretion outer membrane protein TERM 730 715104 - 715089 - G 71 -6.8 -4.30987 | opp_overlap 715102 ATTCGGGATAATAAA CACCAG TAAT CTGGCG CAAGCTCTCTAGTGC YPK_0655 716115 - 716747 + | ADP-ribose diphosphatase YPK_0656 716781 - 717206 + | hypothetical protein YPK_0657 717215 - 718057 + | metallophosphoesterase YPK_0658 718115 - 718696 + | hypothetical protein TERM 731 720007 - 719971 - g 86 -8 -5.00616 | opp_overlap 719970 719971, overlap 719975 GTGGTGCGTAAAAAA CTGACCAG-TGGCCCGGC ACT GCCTGGCAAACTGG-CAG ATTGTACTTCGCAGG YPK_0659 718798 - 720693 + | DNA topoisomerase IV, B subunit YPK_0660 720697 - 721608 + | LysR family transcriptional regulator TERM 732 721659 - 721633 - T 100 -17.3 -4.4715 | GGGTAACGTATAAAA CGGCCCTCCCC AGAGA GAGGAGGGCCG AACCGCTTAGCTGTT YPK_0661 722250 - 721666 - | NAD(P)H dehydrogenase (quinone) TERM 733 722779 - 722752 - g 83 -4.8 -5.22039 | gap 1, overlap 722753 GCTAAATTCAAAAAA TCAGCCCGT-ACC GTG GGTGACGTGCTGG GTAAATATCATCCGC TERM 734 722778 - 722753 - g 71 -8.3 -3.72139 | gap 1, overlap 722752 CTAAATTCAAAAAAT CAGCCCGT-ACC GTG GGTGACGTGCTG GGTAAATATCATCCG TERM 735 723343 - 723307 - g 86 -8 -5.00616 | gap 1, overlap 723310 723312 GCGGTGTGGAAAAAA GAAGATGGCAGCGCCGT GATC ACGGCGTTACCA-CATC AGGTTTCCGGCGCGA TERM 736 723340 - 723310 - g 83 -8.3 -4.61482 | gap 1, overlap 723307 723312 GTGTGGAAAAAAGAA GATGGCAGCGCCGT GATC ACGGCGTTACCA-C ATCAGGTTTCCGGCG TERM 737 723339 - 723312 - g 91 -12 -3.91465 | overlap 723310 723307 GTGGAAAAAAGAAGA TGGCAGCGCCGT GATC ACGGCGTTACCA CATCAGGTTTCCGGC TERM 738 723767 - 723782 + G 73 -4.6 -4.81249 | opp_overlap 723766 723767 AAGATGATCCTAAAC CGCTAC TGAT GCAGCG TTTTTCCATTTCGGA YPK_0662 722554 - 724827 + | DNA topoisomerase IV, A subunit TERM 739 725569 - 725546 - gf 75 -3.2 -5.04987 | AACAGGTGCAAAAAA GAAACATC TCTATTTG GATGTTCC CAGAAGGCACACGCA YPK_0663 725134 - 725865 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 740 725900 - 725910 + GF 75 -8.2 -3.89695 | overlap 725893 CAGGCTATCGCGGCC CCGC GCG GCGG TTATATTTATCGCCA YPK_0664 725828 - 725935 + | hypothetical protein TERM 741 726177 - 726188 + G 93 -7.2 -5.47399 | TATTAGAATCTCGCC GCGG CCAA CCGC TTTTTTTAACCTTGC YPK_0665 726044 - 727468 + | multicopper oxidase type 3 TERM 742 727599 - 727611 + F 78 -9.1 -3.83409 | CGCATGTCTCGCTTG CCTGC TTC GCAGG TTTACTGATATGTAC TERM 743 728437 - 728413 - g 72 -5.8 -4.36914 | CTGCGGGTGAGAAAA TTACGGATAT TCAGG ATGTCCGTAA CACCGTTGTGATGCG YPK_0666 727776 - 730103 + | radical SAM domain-containing protein YPK_0667 730958 - 730125 - | 2,5-didehydrogluconate reductase TERM 744 731003 - 731028 + r 71 -3.4 -4.99645 | overlap 730997 GTATTAGCCCGTTGC TGATAACG TAAGTTTAGT CGTTATCA TTTTATTTATGACCT TERM 745 731293 - 731323 + r 93 -9.7 -4.2558 | opp_overlap 731290 GTATAAACAGGAGGA CTGGCAGCATGAC ATGCG GTAATGCCGCCAG TTTTGGTACGAGATA TERM 746 731384 - 731374 - R 76 -6.8 -4.55721 | AAATCTTACATAAAA CGGT TAT ACCG CCGCTTCATAGATAC YPK_0668 732534 - 731377 - | iron-containing alcohol dehydrogenase TERM 747 732441 - 732458 + g 71 -6.9 -4.21631 | opp_overlap 732441 732439 CGTAGGTAATCAATA TCCGGGC ATCC GCCGGGA TTTCTTGAGTCAATT TERM 748 732633 - 732645 + H 80 -4.8 -5.17353 | CGTAACCACATCACT GTGC CTGGA GCAC TTTTTTCGTCAATAT YPK_0669 732931 - 733824 + | AraC family transcriptional regulator TERM 749 733869 - 733885 + T 75 -5.8 -4.65916 | opp_overlap 733869 AAGGCTTCATAGAAA CGGCGT ATTAG ATGCCG TTTTATTCACCTGGA YPK_0670 734578 - 733916 - | SNARE associated Golgi protein YPK_0671 735983 - 734772 - | cystathionine beta-lyase TERM 750 735815 - 735839 + g 83 -5 -5.2696 | gap 1, overlap 735818 CATAGAACAACTCAC CATTGCCCCGA TTGA TCGTGGCA-TG TTTTTTCGCTTTTAC TERM 751 735818 - 735837 + g 75 -7.8 -4.24654 | overlap 735815 AGAACAACTCACCAT TGCCCCGA TTGA TCGTGGCA TGTTTTTTCGCTTTT YPK_0672 736462 - 737499 + | tonB-system energizer ExbB YPK_0674 738065 - 737880 - | hypothetical protein YPK_0673 737503 - 737934 + | TonB system transport protein ExbD TERM 752 737929 - 737980 + gT 81 -7.4 -4.58685 | gap 1, opp_overlap 737935 737936, overlap 737935 737936 GGGTCCAGCGGCGTA CAATAACTTTTTGCAAGCGCGGTGA CTG TTACCGCGCTTGCATCAACTT-TGG TTTTTGGGGCAATTT TERM 753 737975 - 737935 - GT 84 -9.7 -3.79113 | opp_overlap 737929 737935 737936, overlap 737936 AGCGGCGTACAATAA CTTTTTGCAAGCGCGGTGA CTG TTACCGCGCTTGCATCAAC TTTGGTTTTTGGGGC TERM 754 737935 - 737975 + gT 100 -11.9 -4.32046 | opp_overlap 737935 737936, overlap 737929 737936 AGCGGCGTACAATAA CTTTTTGCAAGCGCGGTGA CTG TTACCGCGCTTGCATCAAC TTTGGTTTTTGGGGC TERM 755 737936 - 737974 + gT 100 -15.4 -3.18505 | opp_overlap 737935 737936, overlap 737935 737929 GCGGCGTACAATAAC TTTTTGCAAGCGCGGTGA CTG TTACCGCGCTTGCATCAA CTTTGGTTTTTGGGG TERM 756 737974 - 737936 - GT 91 -13.2 -2.87146 | opp_overlap 737936 737935 737929, overlap 737935 GCGGCGTACAATAAC TTTTTGCAAGCGCGGTGA CTG TTACCGCGCTTGCATCAA CTTTGGTTTTTGGGG TERM 757 738197 - 738170 - TR 70 -9.2 -2.8176 | overlap 738162 738167 738165 CAATCGATAATATTA TTATCGGGAACG TAGC CAATCCCGATAA AAACCATTTTTATGC TERM 758 739562 - 739542 - TR 87 -4.8 -5.45652 | overlap 739543 ATTTTTAATAAAAAA CTCATACT TCTCT AGTATGAA AGTTGTCATTGTTTT YPK_0677 740183 - 739611 - | hypothetical protein YPK_0678 740640 - 740167 - | TadE family protein YPK_0679 741407 - 740637 - | putative lipoprotein TERM 759 741186 - 741154 - G 83 -10 -4.25957 | opp_overlap 741157, overlap 741151 AGATAATATAAAGAA GAATGGCTATCACC GGAGA GGTAATAGGCATTC GCTAATTTCAATCTG YPK_0680 742224 - 741391 - | type II secretion system protein TERM 760 741600 - 741623 + g 88 -8.2 -4.67563 | opp_overlap 741599 741597 741600, overlap 741599 AGCCAAAACTAAGAC TGTATTGCAG TGTG CTGCAAAACA TTTTCATTTCTATTG YPK_0681 743096 - 742221 - | type II secretion system protein YPK_0682 744379 - 743093 - | type II secretion system protein E TERM 761 744148 - 744126 - G 74 -10.7 -2.81872 | opp_overlap 744126, overlap 744121 744130 TTGACCATAATATCA CTAATGGAG TCATC CTCCATTAG TTCTCTTAATGGGCC TERM 762 744126 - 744148 + g 81 -10.7 -3.71284 | opp_overlap 744126 744121 744130 TTGACCATAATATCA CTAATGGAG TCATC CTCCATTAG TTCTCTTAATGGGCC YPK_0683 745518 - 744391 - | hypothetical protein TERM 763 744970 - 744999 + g 100 -4.3 -5.96894 | overlap 744972 GAGATCTTGCGAGCC TTGATTGCCTTGT AATA ACAAGGTAGGCGA TTTTTTTATTTGGGT TERM 764 745453 - 745479 + g 83 -2.4 -5.5604 | opp_overlap 745453 TCGGGTTGAGATAAT GACAATAG CACTCTTTTCC CTATTGTC TTTTTTGTTAATTAA YPK_0684 745819 - 745529 - | hypothetical protein TERM 765 745590 - 745604 + g 74 -2.8 -5.08601 | TTATAAACAGCACAC CCATGA ACA TCATTG TTTTTATTCCGGTAG YPK_0685 747087 - 745816 - | type II and III secretion system protein YPK_0686 748011 - 747130 - | hypothetical protein YPK_0687 748485 - 748063 - | peptidase A24A prepilin type IV TERM 766 748537 - 748511 - R 100 -18.2 -3.61922 | opp_overlap 748498 748498 748513 748515 AATAGTGAGGCGAAA CATATGGTAGCC GAT GGCTACCATATG TATAGCTGAGAATAT TERM 767 748513 - 748535 + r 100 -15 -2.91383 | opp_overlap 748511, overlap 748498 748498 748515 TAGTGAGGCGAAACA TATGGTAGCC GAT GGCTACCATA TGTATAGCTGAGAAT TERM 768 748515 - 748533 + r 95 -13.2 -3.0094 | opp_overlap 748511, overlap 748513 748498 748498 GTGAGGCGAAACATA TGGTAGCC GAT GGCTACCA TATGTATAGCTGAGA YPK_0688 748749 - 748552 - | hypothetical protein YPK_0689 749558 - 748971 - | putative transcriptional regulator, CadC TERM 769 749486 - 749498 + g 71 -4.8 -4.56597 | CTGTTCCACCGGGCC CGCT TAAGC AGCG TTTTTCCGGAGAGAA TERM 770 749636 - 749657 + r 74 -6.5 -4.56978 | overlap 749656 ATTATTATTTGTGTC GCATCGCTG TATT TAGCGTTGC TTTCTTCTTTCGACA TERM 771 750272 - 750242 - R 75 -7.5 -4.25325 | opp_overlap 750258 750271 AGAGAATAAAGGAAA GCCCTAAGACCGG AGAGA CTAGGCTTAGGGC TGAGTCTGCTTTACC YPK_0690 750633 - 750484 - | hypothetical protein YPK_0691 751030 - 750764 - | hypothetical protein TERM 772 751021 - 750991 - G 100 -13.4 -5.32396 | opp_overlap 750997, overlap 750992 AGAGTAAAAATAAAA GTAAAAGGGCCAGC AAT GCTGACCCTTTTAT TAACCTCATTGCCAA TERM 773 751020 - 750992 - G 100 -16.9 -3.76997 | opp_overlap 750997, overlap 750991 GAGTAAAAATAAAAG TAAAAGGGCCAGC AAT GCTGACCCTTTTA TTAACCTCATTGCCA TERM 774 750997 - 751015 + g 100 -10.2 -4.66318 | opp_overlap 750992 750991 AAAATAAAAGTAAAA GGGCCAGC AAT GCTGACCC TTTTATTAACCTCAT YPK_0692 752465 - 751068 - | fibronectin type III domain-containing protein YPK_0693 753952 - 752537 - | glycoside hydrolase family protein TERM 775 753499 - 753518 + g 73 -3.4 -5.0065 | overlap 753501 TTACTGTTTTTAATG CCCGAGGG ATCA CCGTCGAG TTTTCTTTATAACTA YPK_0694 755096 - 755626 + | fimbrial protein TERM 776 755659 - 755681 + F 100 -9.2 -5.71712 | opp_overlap 755659 TAAAATTTTAAAAAA GCATGTGG AGAAATG CCACATGC TTTTTTTCTATGAAA TERM 777 755681 - 755659 - f 100 -9.2 -5.15117 | opp_overlap 755659 TAAAATTTTAAAAAA GCATGTGG AGAAATG CCACATGC TTTTTTTCTATGAAA YPK_0695 755933 - 758413 + | fimbrial biogenesis outer membrane usher protein TERM 778 758651 - 758629 - g 74 -4.1 -4.93316 | GAACAACAGCAAAAA GTCACCACC CCGTT AGTGGCAAC GCCACCAGTTCAGCG YPK_0696 758431 - 759150 + | pili assembly chaperone TERM 779 759626 - 759614 - g 77 -6.3 -4.5448 | CAGGGACAAAAATAA CGATT GCT AATCG AGTCACGGTCCAACT YPK_0697 759175 - 760278 + | fimbrial protein TERM 780 760461 - 760478 + T 74 -4.1 -4.98436 | TGTCAATAACCTCAA GCGAC CAATAAGT GTCGC TTTTTATGCTGTTAG YPK_0698 761569 - 760490 - | periplasmic binding protein TERM 781 762440 - 762450 + G 91 -3.2 -5.72616 | ATGAATATTCTTTCC CTAC GCG GTGG TTTTTTTCTGTGGAT TERM 782 763396 - 763383 - g 75 -5.3 -4.75063 | opp_overlap 763384 763386, overlap 763384 763386 ATAAAAGGCCAAAAA CCATT GTTG AATGG CAACAAAGTTTTATA YPK_0699 762425 - 763420 + | hypothetical protein TERM 783 763486 - 763451 - T 100 -12 -4.39426 | opp_overlap 763448 763447 TACAGGGCCATAAAA TCGCCACAGTAATC TCATACTC GCTTACTGTGGCGA TCCCTCTTCTTCCGT YPK_0700 764081 - 763512 - | lipoprotein YPK_0701 764093 - 764224 + | hypothetical protein YPK_0702 766386 - 764293 - | type III secretion FHIPEP protein TERM 784 765235 - 765249 + g 76 -10 -3.74178 | overlap 765227 765229 765243 TCGCACGCCGCGTAG CCGTTG GTT CAACGG TTTACCCTTTGATTC YPK_0703 767509 - 766376 - | flagellar biosynthetic protein FlhB TERM 785 766837 - 766854 + g 71 -2.7 -4.94243 | TTTTATGCTCTTGTT TGACC TCCTGTTT GGTCA TTTTCATTTTTTTGG TERM 786 767428 - 767440 + g 89 -3.3 -5.68039 | opp_overlap 767428 TGACATCTTTAGAAC GGGGA ATA TCGCC TTTTTTTCTGGCTTT TERM 787 767466 - 767476 + g 73 -4.6 -4.76312 | overlap 767459 767456 GCTTTCGACAGCTTC CCCG CTG TGGG TTTTTCACTCTTCTC YPK_0704 768288 - 767509 - | flagellar biosynthetic protein FliR YPK_0705 768561 - 768289 - | flagellar biosynthetic protein FliQ YPK_0706 769333 - 768563 - | flagellar biosynthetic protein FliP TERM 788 769287 - 769264 - G 73 -10.2 -3.10499 | overlap 769222 GAAGAGGGGAATACA GCAGCCCGCC CACC AGCAGGCCGC GGCTGATGATGGTCA YPK_0707 769743 - 769330 - | flagellar motor switch protein FliN TERM 789 769374 - 769386 + g 73 -3.4 -4.90266 | opp_overlap 769374 TATTGATGTTAATAA TACG CAGGC CGTA TTTTTCATTAATCAC YPK_0708 770635 - 769736 - | flagellar motor switch protein TERM 790 769977 - 769997 + g 91 -3.9 -5.67967 | ACTAAGTGTTCAAGT TGCCTCTCT GAC AGTGAGACA TTTTTTTCTACTGCT TERM 791 770212 - 770225 + g 74 -3.1 -5.1361 | AGAGATCGGTTATTT CAAGC CCGA GTTTG TTTTTTAGCCTTTCT TERM 792 770389 - 770354 - G 70 -7.6 -3.82262 | AATGTTAAGTAACAA CAGACGGTCGATATCG AATG CGATATTACCCATCTG GCTGGTTAGCATTTT TERM 793 771741 - 771757 + G 73 -7.3 -4.258 | GGCCAGAGGATATTC TGCCTTT GGT GAAGGCA TTTATTAATAAGTAC YPK_0709 771158 - 772186 + | sigma-54 dependent trancsriptional regulator YPK_0710 772203 - 772583 + | flagellar hook-basal body complex protein FliE YPK_0711 772593 - 774233 + | flagellar M-ring protein FliF YPK_0712 774205 - 775248 + | flagellar motor switch protein FliG TERM 794 775285 - 775267 - g 80 -3.8 -5.252 | overlap 775269 GATGTCGATAAAAAA TACCCC ACGGGCG GGGGCA GTGAAACTGCGGGTT TERM 795 775931 - 775941 + G 73 -3.2 -5.00616 | CAATGCATTGGTGCG TTGC ACA GCAG TTTTTTGACGGAACC YPK_0713 775253 - 775969 + | flagellar assembly protein FliH TERM 796 776016 - 776036 + G 79 -11.8 -3.15544 | opp_overlap 776012 ATCGAAAACATTCAT CTGGCCCG AGTGG CGGGCCGG TTAGTGCGAGTGACG YPK_0714 775962 - 777302 + | FliI/YscN family ATPase YPK_0715 777306 - 777743 + | flagellar export protein FliJ TERM 797 777803 - 777774 - T 100 -13.7 -5.67063 | opp_overlap 777774 GCGACCATAAAAAAA TCCGTCATAGGGA ATAT TCTCTATGACGGA TTTTTTATTGGGTGG TERM 798 777774 - 777803 + T 100 -15.9 -5.4833 | opp_overlap 777774 GCGACCATAAAAAAA TCCGTCATAGGGA ATAT TCTCTATGACGGA TTTTTTATTGGGTGG YPK_0716 778468 - 778043 - | hypothetical protein YPK_0717 778741 - 778475 - | putative flagellar regulatory protein YPK_0718 779807 - 778989 - | flagella basal body P-ring formation protein FlgA TERM 799 779050 - 779067 + g 75 -3.3 -5.17576 | overlap 779051 ACCGTGGCGGTCACC ACTCGGC CACT GCTGAGG TTTTTTACCTTGATA YPK_0719 779895 - 780371 + | flagellar basal-body rod protein FlgB YPK_0720 780374 - 780799 + | flagellar basal-body rod protein FlgC YPK_0721 780802 - 781458 + | flagellar hook capping protein YPK_0722 781513 - 781821 + | flagellar basal body rod protein YPK_0723 781827 - 782603 + | hypothetical protein TERM 800 782684 - 782717 + T 82 -6 -5.00616 | gap 1, overlap 782685 782686 TACCCGTTATTCTTC AAGCTG-CATGTGCG TTGAT CGCACATGTCAGCCG TTTTTTCAGCCCCAG TERM 801 782685 - 782716 + T 78 -9.5 -3.60048 | gap 1, overlap 782684 782686 ACCCGTTATTCTTCA AGCTG-CATGTGCG TTGAT CGCACATGTCAGCC GTTTTTTCAGCCCCA TERM 802 782686 - 782715 + T 91 -13 -2.75708 | gap 1, overlap 782685 782684 CCCGTTATTCTTCAA GCTG-CATGTGCG TTGAT CGCACATGTCAGC CGTTTTTTCAGCCCC YPK_0724 783213 - 782767 - | hypothetical protein YPK_0725 784111 - 783194 - | putative transcriptional regulator, CadC TERM 803 784712 - 784696 - H 72 -7.3 -3.99805 | opp_overlap 784696, overlap 784701 784705 TCTTAAAAATTTAAA GCAGATT AAT AACCTGC GTTATTAAAATACTA YPK_0726 784867 - 786072 + | flagellin domain-containing protein TERM 804 786448 - 786473 + G 100 -16.2 -2.53995 | GCGCAAGCCGCAGGT GCAGGAGGGC CGGCTA GCCCTCCTGC TCGGTTGAGGTGGCT YPK_0727 786326 - 786481 + | hypothetical protein TERM 805 786606 - 786625 + F 100 -8.6 -5.9362 | opp_overlap 786606 CCATTAATAAATCGA TACCGCTT CTTG GAGCGGTA TTTTTTTGTATTTTA TERM 806 786642 - 786658 + F 85 -9.3 -4.09864 | overlap 786643 TTTTTTGTATTTTAT ACCGGGC ATG GCCCGGC TTTTGGGCGGTGGAT TERM 807 786643 - 786657 + F 95 -12.8 -3.05597 | overlap 786642 TTTTTGTATTTTATA CCGGGC ATG GCCCGG CTTTTGGGCGGTGGA YPK_0728 786719 - 787486 + | flagellin domain-containing protein YPK_0729 787488 - 788288 + | putative flagellar hook-length control protein TERM 808 788293 - 788313 + F 73 -9.1 -3.55814 | overlap 788280 788296 TATACGGTTGAGTTT CAACAGCAA TTA TTGTTGTTG TTGTATGAATTGCTG YPK_0730 788332 - 788937 + | MotA/TolQ/ExbB proton channel TERM 809 789464 - 789475 + G 75 -5.8 -4.5123 | overlap 789450 CCAGCGCAGTAGTGC GGTG TTAA CACC TTTCTTTAGTCGGTT YPK_0731 788937 - 789848 + | OmpA/MotB domain-containing protein TERM 810 790063 - 790077 + F 80 -6.4 -4.80455 | opp_overlap 790063 CGTGTCAATTTTAAA TCGGTT TCT GACCGA TTTTCTCTTTCGCTG TERM 811 790469 - 790455 - g 80 -4.3 -5.18357 | CAACTCACCAAAAAA CAAGA CGTTT TCTTG GATGGCGAGAAAGTC YPK_0732 790308 - 790904 + | hypothetical protein YPK_0733 790904 - 791356 + | hypothetical protein TERM 812 791432 - 791459 + G 71 -7.1 -4.08706 | opp_overlap 791430, overlap 791412 791434 TAGATTACAATATGT GAGCATTGTCT TATTTC AGACAATGCTA TTTCTCTGCTACGAC TERM 813 791434 - 791457 + G 76 -9.7 -3.6393 | opp_overlap 791430, overlap 791412 791432 GATTACAATATGTGA GCATTGTCT TATTTC AGACAATGC TATTTCTCTGCTACG TERM 814 791611 - 791627 + G 74 -6.5 -4.31837 | ATGATGCCGGATACT CAGCCTT CGT ATGGCTG TTTGTTCCCTTTCTT YPK_0734 791340 - 791711 + | hypothetical protein YPK_0735 791712 - 791840 + | hypothetical protein YPK_0736 792304 - 791837 - | 17 kDa surface antigen TERM 815 792303 - 792293 - G 73 -5.4 -4.49316 | opp_overlap 792293, overlap 792289 AGCAGCAAGAATAAA TGGT TTA ACCA TGGTATAGCCCCTTT TERM 816 792643 - 792616 - R 72 -9.4 -3.19889 | opp_overlap 792616 TAGTAATATACTTAA CAGATTCAAAAA TTGA TTTTTAAATCTG TTTTTTTTCAAATAA TERM 817 792616 - 792643 + r 100 -7.2 -5.78622 | opp_overlap 792616 TAGTAATATACTTAA CAGATTCAAAAA TTGA TTTTTAAATCTG TTTTTTTTCAAATAA TERM 818 792833 - 792845 + r 84 -2.7 -5.73672 | CAAAAAATATAATAA CAATG TAC TATTG TTTTTTTCATTGTTT TERM 819 793203 - 793189 - R 95 -9.2 -4.46267 | opp_overlap 793189 AGAAGGCAAGGAAAA CGGGCA GGA CGCCCG TTTTAGGCGTCACGC TERM 820 793189 - 793203 + r 79 -8.5 -4.11216 | opp_overlap 793189 AGAAGGCAAGGAAAA CGGGC AGGAC GCCCG TTTTAGGCGTCACGC TERM 821 793267 - 793236 - R 76 -9.4 -3.54543 | gap 1, overlap 793255 AGGGACCCGCGTAAA GCCGTCCGCCAGCCG AAA CGA-TGACGGAGGGC ATCCACGCAGTGGAC TERM 822 793338 - 793317 - R 86 -11.6 -3.32844 | opp_overlap 793300 793317 GCGGGGATTCCACAA GGGGTCAC GCGCTT GTGACCCC TTTGGCGGTTGCGGC TERM 823 793317 - 793338 + r 100 -12.3 -3.60792 | opp_overlap 793317, overlap 793300 GCGGGGATTCCACAA GGGGTCACG CGCT TGTGACCCC TTTGGCGGTTGCGGC YPK_0737 796069 - 793502 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 824 795122 - 795145 + g 71 -8.8 -3.67597 | opp_overlap 795117 TAACCAATCACTGGC CGATTCTGCC ACAT GGCGGAAACG TTCTTCGCTGGCAGC YPK_0738 796508 - 797800 + | RND family efflux transporter MFP subunit TERM 825 799139 - 799172 + G 71 -8.9 -3.52906 | gap 1, overlap 799137 AGCCAGATTGCCGGG CCGATCATCGCCACCA CAC TGGTGTTGATGG-CGG TATTTGTGCCAATCG YPK_0739 797813 - 800713 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein YPK_0740 800713 - 800931 + | putative integral membrane efflux protein TERM 826 800999 - 801043 + T 78 -10 -3.53811 | gap 1, opp_overlap 801003, overlap 801000 801001 AATGCTGTTTTGTCA TA-AAGCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGCGACTC TTTGGGGGCAGTGAC TERM 827 801000 - 801041 + T 100 -15.1 -3.34715 | opp_overlap 801003, overlap 800999 801001 ATGCTGTTTTGTCAT AAAGCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGCGAC TCTTTGGGGGCAGTG TERM 828 801001 - 801040 + T 100 -18.6 -2.60615 | opp_overlap 801003, overlap 801000 800999 TGCTGTTTTGTCATA AAGCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGCGA CTCTTTGGGGGCAGT TERM 829 801038 - 801003 - T 100 -23.4 -3.85698 | opp_overlap 801001 801000 800999 CTGTTTTGTCATAAA GCCCATACCCGCCGGT TAAG ACCGGTGGGTATGGGC GACTCTTTGGGGGCA YPK_0741 802562 - 801066 - | ShET2 enterotoxin domain-containing protein TERM 830 802774 - 802792 + H 100 -12.4 -4.13995 | CAATTCTGCCTTTGA CCTTCCCC CAA GGGGAGGG TTTAGTTTGTAGGCA TERM 831 803108 - 803127 + G 73 -2.2 -5.04733 | gap 1, overlap 803110 803113 803118 GGCAACAGAAATTTG TTTATCCGC TGG GCG-ATAGA TTTTATTTGTCATTC YPK_0742 802840 - 803427 + | hypothetical protein TERM 832 803617 - 803601 - f 82 -5.9 -5.02645 | AACAAATAAAATAAA CAGTAAC TAC ATTACTG AATCATCTTGTTGTT TERM 833 803656 - 803666 + F 79 -3.2 -5.35224 | ATTTAATAAATTATT GTGG TGT CTAC TTTTCTTTTTATAAG TERM 834 803789 - 803799 + F 82 -3.2 -5.5208 | TTCTTGTATTTTTGT GGGA TTT TTCC TTTTTTATATTATAC TERM 835 804493 - 804515 + G 73 -9.9 -3.34222 | gap 1 ATATTACTGTCAGCA CGCAGGCAGA GCTT TCTGCC-GCG TTATCCAATGGTACT TERM 836 810903 - 810882 - g 79 -10.9 -3.4489 | opp_overlap 810884 AACTGGGAGAATGAA CATCCGGTG ACGC CACCGAATG TGTCGCTCCTTGAGC TERM 837 812394 - 812381 - g 71 -4.5 -4.58283 | GAATGTGGCGAAAAA CGATG CCAG CACCG CGTTTGACTTTGGTT TERM 838 812724 - 812703 - g 79 -10.9 -3.4489 | opp_overlap 812705 AACTGGGAGAATGAA CATCCGGTG ACGC CACCGAATG TGTCGCTCCTTGAGC TERM 839 814221 - 814208 - g 71 -4.5 -4.58283 | GAATGTGGCGAAAAA CGATG CCAC CACCG CGTTTGACTTTGGTT TERM 840 817048 - 817038 - g 73 -8.2 -3.92542 | GTCACGGTGAAACAA GCCG GGA CGGC GAATATTGCGGAGCT YPK_0743 804249 - 817187 + | outer membrane autotransporter TERM 841 817233 - 817263 + T 100 -11.3 -5.26316 | opp_overlap 817233 CATGGTGGTGATCAA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGGCATAG TERM 842 817263 - 817233 - T 84 -11.3 -3.14344 | opp_overlap 817233 CATGGTGGTGATCAA CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTTATGGCATAG YPK_0744 819172 - 817304 - | leucine-rich repeat-containing protein TERM 843 817458 - 817480 + g 76 -8.4 -4.06678 | overlap 817459 TCGCCCGTCATCCCG TTGGCGGC CAGCTCA GCCGCCAG TTTATCTGGGTAAAT TERM 844 818114 - 818104 - G 75 -3.2 -5.08088 | overlap 818105 818112 AACGGTGAAGAAAAA CGCT AAA AGCA GCTGAGTTAGCTTCT TERM 845 819356 - 819326 - R 89 -11.3 -3.44825 | opp_overlap 819326 819354 AAAATGACCAATCAA CGGCGCATATT ACAGGACAG AATATGCGCCG TTTTTTATGGGATAA TERM 846 819326 - 819356 + r 100 -11.3 -5.26316 | opp_overlap 819326, overlap 819354 AAAATGACCAATCAA CGGCGCATATT ACAGGACAG AATATGCGCCG TTTTTTATGGGATAA TERM 847 819488 - 819516 + r 90 -11 -3.9749 | gap 1 ACCCTACCTTGGGGG GCGCTCCGCACCA TCCC TGGCGCGGA-CGC TTTACTCTTCTGCCT YPK_0745 820639 - 819734 - | leucine-rich repeat-containing protein TERM 848 820827 - 820857 + r 100 -11.3 -4.85599 | overlap 820855 AGAATGACCTATCTG CGGCGCATATT GCAGGACAG AATATGCGCCG TTTTTATGGGATAAC YPK_0746 822733 - 820886 - | leucine-rich repeat-containing protein TERM 849 821049 - 821071 + g 76 -8.4 -4.06678 | overlap 821050 TCGCCCGTCATCCCG TTGGCGGC CAATTCA GCCGCCAG TTTATCTGGGTAAAT TERM 850 821354 - 821373 + g 75 -3.6 -5.02231 | overlap 821342 821356 GACTTCGATATCATC GACTGAAT TTAC ATTCAGTG TTTTTAGTATTTTTA TERM 851 821705 - 821695 - G 87 -6.8 -5.08088 | AACGGTGAAGAAAAA CGCT AAA AGCG GCTGAGTTAGCTTCT YPK_0747 823373 - 823239 - | hypothetical protein TERM 852 823590 - 823610 + G 76 -8.9 -3.83756 | TTTATTTACGCGCTG GGGGTGTGC TGG GCACTCTCC TTTGGATTATCGTTT TERM 853 823685 - 823706 + G 73 -7.3 -4.17556 | gap 1, opp_overlap 823675 823671, overlap 823685 AGTTACCAATATGTT GG-CACCGGT TGA ACTGGTGACC TTTATTACCACTATG YPK_0748 823482 - 825038 + | AbgT putative transporter YPK_0749 825480 - 826712 + | peptidase T TERM 854 827403 - 827386 - g 77 -2.7 -5.2112 | AACAGCAGCAAAAAA CACCCAT AAGT ATAAGTG TATTAACGGGCTTTG TERM 855 827502 - 827512 + G 81 -3.2 -5.44119 | AAAGCAGGCAATCCA TCTG ACG CAGG TTTTTTTACCATGCG TERM 856 828286 - 828301 + G 71 -2.6 -4.84359 | overlap 828297 GGCCATTTAATTGGT TGATAG GGAG CTATTA TTTTTATCAAGATGA YPK_0750 827238 - 829310 + | TonB-dependent receptor TERM 857 829360 - 829324 - f 82 -5.9 -4.97461 | opp_overlap 829326 829328, overlap 829326 829328 AATAAACATTAAAAA CACATATGGCTGTGACT ATT AGATACAGCCATATATT AATTTTGGTGTAAAA TERM 858 829326 - 829358 + F 73 -8.5 -3.73858 | opp_overlap 829324 829326 829328, overlap 829328 TAAACATTAAAAACA CATATGGCTGTGACT ATT AGATACAGCCATATA TTAATTTTGGTGTAA TERM 859 829358 - 829326 - f 79 -8.5 -4.07993 | opp_overlap 829326 829328, overlap 829324 829328 TAAACATTAAAAACA CATATGGCTGTGACT ATT AGATACAGCCATATA TTAATTTTGGTGTAA TERM 860 829356 - 829328 - f 75 -8.9 -3.60412 | opp_overlap 829328 829326, overlap 829326 829324 AACATTAAAAACACA TATGGCTGTGACT ATT AGATACAGCCATA TATTAATTTTGGTGT TERM 861 829328 - 829356 + F 83 -11.1 -3.44148 | opp_overlap 829326 829324 829328, overlap 829326 AACATTAAAAACACA TATGGCTGTGACT ATT AGATACAGCCATA TATTAATTTTGGTGT TERM 862 832478 - 832459 - g 70 -2 -4.86621 | ATGGTCAACGAAAAA CGCCATTA CGTT TAGGGGCG AGTAAAAGTCAGGTT TERM 863 833131 - 833120 - g 71 -7.2 -4.07568 | CTGTCGCTTTGAAAA GGCG CAAT CGCC CAAGCAATGGTTGGC TERM 864 833897 - 833911 + G 76 -9.2 -3.90586 | opp_overlap 833891 833888 TGCAAAGGAGCGCTA CGCGCT ACG GGCGCG TTTATCCCATCGTAT TERM 865 834691 - 834677 - g 71 -7 -4.07687 | opp_overlap 834677 834685, overlap 834678 ATTGCTCGGGGAAAA TGCGCC GGG GGCGCT GCACTATTTGGTTTC TERM 866 834690 - 834678 - g 72 -10.5 -3.04398 | opp_overlap 834677 834685, overlap 834677 TTGCTCGGGGAAAAT GCGCC GGG GGCGC TGCACTATTTGGTTT TERM 867 837090 - 837111 + G 77 -10.2 -3.53012 | GATGCCCTGCCTGAG GGGATTGC CATGCT GCAATCCC TTTGCCACGGAGGGA TERM 868 839413 - 839432 + G 78 -10.8 -3.34398 | opp_overlap 839404 839411 839403, overlap 839411 AACAACTTGAACACG CTGTGCAA CGGC TTGCACAG TATTTACACGAGCAA YPK_0751 829461 - 841088 + | amino acid adenylation domain-containing protein TERM 869 842363 - 842349 - g 83 -11.4 -3.61398 | TGGGGGCGGCAACAA GGCGTG GGG CACGCC AGAATGCCCATCGTT TERM 870 842672 - 842696 + G 83 -9.9 -4.21933 | GGAGGAGGTCGGCAC GGGAGAGGCAC TTT GTGACTCGCCC TTGTTTTGGCATTCA YPK_0752 841101 - 846794 + | amino acid adenylation domain-containing protein YPK_0753 846791 - 847861 + | saccharopine dehydrogenase TERM 871 848927 - 848949 + G 100 -9.8 -4.99035 | TTGCCGAACCGATGA TGGCGTCACC TAA GGTGGCGACA TTTTTATCTCAATGG YPK_0754 847858 - 848985 + | thiazolinyl imide reductase TERM 872 849408 - 849393 - g 71 -4.6 -4.64676 | overlap 849394 GTATCTTGAACAAAA TCACCC AATT GGGTGG CAGCACATTGGACTA TERM 873 849624 - 849636 + G 75 -3.3 -5.1244 | TTCGGCTACAGGTGT TCCCC GGT GGGCA TTTTTATCTTAATCA YPK_0755 848978 - 849742 + | thioesterase TERM 874 850018 - 850034 + G 71 -2.9 -5.00616 | TGTGCTCTTTGATTG CCATGAC GCT GCTATGG TTTTTTGCGCCAGAG TERM 875 850042 - 850064 + G 76 -8.5 -4.00445 | gap 1 TGCTATGGTTTTTTG CGCCAGAGAC ACAA GTCT-TGGCG TTGTTATTACTGGTC TERM 876 850255 - 850271 + G 91 -6.5 -5.29445 | GTGTTTGGGGGTGGT CCGTCAC CGT GTGGTGG TTTTTGTTGTTACAG YPK_0756 849732 - 851018 + | major facilitator transporter TERM 877 851439 - 851488 + G 80 -2.9 -5.38326 | gap 2, overlap 851445 TGGCTCACCATTTAC CCG-A-TATGGCGGCGGCAATTG TCACGC CTATTGCTGCCGCCATTTTACTG TTTTTCTTTGATTGG TERM 878 851445 - 851480 + G 100 -15.5 -4.62102 | overlap 851439 ACCATTTACCCGATA TGGCGGCGGCAATTG TCACGC CTATTGCTGCCGCCA TTTTACTGTTTTTCT TERM 879 851802 - 851825 + G 100 -9.6 -5.00616 | ATCTCGGTTTATTGT GCATTATGCC TGTT GGCATCATGC TTTTTTCCCAAGGGG YPK_0757 851018 - 852790 + | ABC transporter related TERM 880 853255 - 853272 + G 79 -11.3 -3.60971 | opp_overlap 853250 TGCTAAAAGATTGGC GCATGGC GTTA GCCATGC TTTCAACGTTACCCT TERM 881 853509 - 853497 - g 77 -4.7 -4.87786 | overlap 853486 TTAACGGCAGAAAAA GCCGG TGT CTGGC CGATCTACAGTTTTA TERM 882 853584 - 853598 + G 83 -11.4 -3.52079 | ACCTGGGGCTGGGTA GGGGAG AGG CTCCCC TTGTCTGAAGTGTTG YPK_0758 852783 - 854540 + | ABC transporter related YPK_0759 855738 - 854863 - | hypothetical protein TERM 883 855932 - 855952 + r 84 -9.9 -3.75933 | overlap 855907 CTATTTATATTATTT TATGCTTAA TAG TTAAGCATA TTTAATAACATATAT YPK_0760 856570 - 856172 - | hypothetical protein YPK_0761 856807 - 856938 + | hypothetical protein TERM 884 857789 - 857811 + F 83 -11.4 -2.94912 | opp_overlap 857793, overlap 857793 AACATAAATGCGGTT CAAATGGGTT CCA GACCCATTTG TCTCTCGCTTGCCGC TERM 885 858426 - 858453 + G 76 -7 -4.42788 | gap 1 AGCCGCGGTAATTAT CATCGGCCTGATC TTT GGTCTGGC-GATG TTTTATGAGGTTGCC YPK_0762 857971 - 859452 + | gluconate transporter TERM 886 859989 - 859979 - f 75 -3.2 -5.14626 | ATCACGAAAATAAAA CGCT CGA AACG ACGTAGGGTAAGGAA TERM 887 863008 - 862988 - g 72 -11.1 -2.50816 | overlap 862987 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YPK_0763 860468 - 864232 + | outer membrane autotransporter TERM 888 864283 - 864251 - f 76 -9.2 -3.57144 | GTTTTTATGTGTAAA GGGTATCAGTATGC AGTAA GGGTACTGATACCC TAATAAATAACCTAA YPK_0764 864818 - 867043 + | type VI secretion system Vgr family protein YPK_0765 867069 - 868388 + | hypothetical protein TERM 889 869075 - 869128 + G 72 -10.9 -2.74012 | gap 1 TGTCGTTACCCACCT CCGTCATGTTGCCGATC-CCGATGGG CCG CCCGGTGGTGGTGGGCGGCATGCCGG TGCTTAACCTGCTCG TERM 890 870525 - 870543 + G 73 -5.2 -4.60889 | overlap 870527 GCAGCGCACGGAACT GGCCTATG ATG CATGGGGC TTTTTGCGGGTCATT YPK_0766 868402 - 872802 + | YD repeat-containing protein YPK_0767 872802 - 873215 + | hypothetical protein TERM 891 873808 - 873793 - g 77 -4 -5.0925 | GTGCAAAAGGAAAAA TGGAAT CTCG ACTCCA GTCAATTGGTCAGTC YPK_0768 873297 - 873842 + | hypothetical protein TERM 892 874263 - 874277 + G 73 -7.2 -4.29326 | opp_overlap 874257, overlap 874257 AAAAAAAGTTCATGG GATGAT GAT ATCATC TTTGTTGGCTTTAAA YPK_0769 873844 - 874437 + | hypothetical protein YPK_0770 874708 - 876789 + | YD repeat-containing protein YPK_0771 876809 - 877171 + | hypothetical protein YPK_0772 877295 - 878278 + | RHS protein TERM 893 878661 - 878675 + G 77 -5 -4.91109 | overlap 878662 AATGTATTTTGGTAT TTATCC ATG GGATAG TTTTTATGATAAAAG TERM 894 878741 - 878753 + G 71 -2.7 -4.87786 | AACCGCCCTTTGCCC GAGAT AAA ATTTC TTTTTCTGAGATTGA YPK_0773 878275 - 878790 + | hypothetical protein TERM 895 878850 - 878884 + F 70 -9.4 -2.7898 | opp_overlap 878869, overlap 878875 ATTTCTTATTTTTTT TAGTGAGTAGCTCTAA ATA TTAGAGCTACTCAAAG TGGTTAAGTATTAGC YPK_0774 878936 - 879259 + | hypothetical protein YPK_0775 879503 - 880027 + | hypothetical protein TERM 896 880262 - 880251 - f 70 -5.8 -4.29907 | ATATTAGAATATAAA GCCA ATAA TGGC GGAAGACGTTCTCCA TERM 897 880417 - 880395 - g 73 -3.6 -4.90013 | opp_overlap 880395 GAACTTAATGAAAAA TTAGAAAA TATTAAT TTTTCTAA TAATTATGAGAAATG YPK_0776 880302 - 880688 + | hypothetical protein TERM 898 881295 - 881282 - g 77 -6.7 -4.59773 | TCTTACTTTGAAAAA TCTGG ATAG CCAGA AAGTTGTCTCCGGCA YPK_0777 881232 - 881645 + | hypothetical protein TERM 899 881787 - 881766 - T 86 -10.2 -3.86346 | opp_overlap 881766 TCATTGCCCCATAAA TTAGGCCC ATGCAG GGGCCTAA TTCCCTGACGGCGTA TERM 900 881766 - 881787 + T 76 -10.2 -3.05596 | opp_overlap 881766 TCATTGCCCCATAAA TTAGGCCC ATGCAG GGGCCTAA TTCCCTGACGGCGTA YPK_0778 883203 - 881824 - | anion transporter TERM 901 883066 - 883054 - G 80 -9.1 -4.18934 | overlap 883062 GAGGATGCCAATAAA GGCCA AGA TGGCC AGGCCGCGATTGGCG YPK_0779 884437 - 883418 - | LacI family transcription regulator TERM 902 884260 - 884272 + g 76 -9.1 -3.87815 | TATCTCTGGCAATGG GCCGT TCC ACGGC TTTATGAACATAGCC TERM 903 884399 - 884424 + g 91 -3.3 -5.85737 | gap 1, overlap 884392 884405 TACTCCCGCTTTGGC CGCAATGTGGCT CAT AGTCACTTT-CG TTTTTTTATTCATAT TERM 904 884405 - 884419 + g 77 -6.4 -4.57518 | overlap 884392 884399 CGCTTTGGCCGCAAT GTGGCT CAT AGTCAC TTTCGTTTTTTTATT YPK_0780 884731 - 885804 + | hypothetical protein YPK_0781 885966 - 887390 + | sugar (glycoside-Pentoside-hexuronide) transporter TERM 905 887552 - 887597 + T 80 -10 -3.73914 | opp_overlap 887552 887557, overlap 887557 ATTGCCATAAACAAA TTATAGGGGC-TTGCGCAATGT CTTA ATTTTGCGCAAAGCCCCT-TAA TTATTGATGGGTGAT TERM 906 887597 - 887552 - T 82 -7.9 -4.55697 | opp_overlap 887552 887557, overlap 887557 ATTGCCATAAACAAA TTATAGGGGC-TTGCGCAA TGTCTTAATT TTGCGCAAAGCCCCT-TAA TTATTGATGGGTGAT TERM 907 887593 - 887557 - T 77 -10.3 -3.16414 | gap 1, opp_overlap 887557 887552, overlap 887552 CATAAACAAATTATA GGGGC-TTGCGCAA TGTCTTAATT TTGCGCAAAGCCCC TTAATTATTGATGGG TERM 908 887557 - 887593 + T 100 -12.4 -3.56142 | gap 1, opp_overlap 887552 887557, overlap 887552 CATAAACAAATTATA GGGGC-TTGCGCAATGT CTTA ATTTTGCGCAAAGCCCC TTAATTATTGATGGG YPK_0782 889845 - 887665 - | TonB-dependent siderophore receptor TERM 909 889668 - 889698 + g 83 -12.7 -3.05463 | overlap 889660 CTTTGATTTCCAGGC CGCCTTGAACTTG TTGTT CAAGTTCAAGGCC TTCAATCACCCAAGT YPK_0783 891245 - 889917 - | L-lysine 6-monooxygenase (NADPH) YPK_0784 892990 - 891242 - | IucA/IucC family protein YPK_0785 893937 - 892987 - | putative siderophore biosynthesis protein IucB YPK_0786 895693 - 893921 - | IucA/IucC family protein TERM 910 894756 - 894778 + g 74 -11.3 -2.78032 | opp_overlap 894754 894753, overlap 894755 894754 GTTTGAGCCAAACGT GCCAAGCGC ATACC GCGTTTGGC CTCTTTTACCGACAG YPK_0787 895782 - 895690 - | hypothetical protein TERM 911 896605 - 896622 + G 74 -6.3 -4.42238 | gap 1, overlap 896594 896608 ATTCGGCCACCACGG TGAGCCAC CAC GTGGC-CA TTTTGCTTAGCATAG YPK_0788 895833 - 897056 + | major facilitator transporter YPK_0789 898180 - 897347 - | intradiol ring-cleavage dioxygenase TERM 912 898382 - 898343 - R 100 -15.4 -5.60993 | opp_overlap 898322 898350 TTTTTTATAAAAAAA TGATAAATTTCATGCTTA ATTA TTAGCATGAAATTTATCA TAGGGAAGGGACAAT TERM 913 898350 - 898375 + r 74 -7.7 -3.96148 | opp_overlap 898343 TAAAAAAATGATAAA TTTCATGCTTA ATTA TTAGCATGAAA TTTATCATAGGGAAG YPK_0790 899914 - 898556 - | hypothetical protein TERM 914 899651 - 899629 - G 71 -10.6 -2.83449 | opp_overlap 899631 899633, overlap 899626 899631 899633 ACAGCGCTATAATCA TATAGCGTCC TGA GGGCGCTATA TCTGCCGGATTAGTA TERM 915 899631 - 899649 + g 74 -11 -2.88579 | opp_overlap 899629 899626 899631 899633, overlap 899633 AGCGCTATAATCATA TAGCGTCC TGA GGGCGCTA TATCTGCCGGATTAG TERM 916 900244 - 900300 + H 70 -3.9 -4.78157 | gap 1, opp_overlap 900250, overlap 900250 GGAGCTAGACATTAT ATTAAATGCTACAGAAGTTCTACTTG CAGAAA CAGGT-GCACTTCTGTAGCATTTTCC TTTATTATTTTTGGT TERM 917 900250 - 900294 + H 100 -11.7 -4.71708 | gap 1, opp_overlap 900250, overlap 900244 AGACATTATATTAAA TGCTACAGAAGTTCTACTTG CAGAAA CAGGT-GCACTTCTGTAGCA TTTTCCTTTATTATT TERM 918 900294 - 900250 - H 86 -10.2 -3.88062 | gap 1, opp_overlap 900250 900244 AGACATTATATTAAA TGCTACAGAAGTTCTACTTGC AGAA ACAGGT-GCACTTCTGTAGCA TTTTCCTTTATTATT TERM 919 900430 - 900450 + H 74 -9.8 -3.16881 | opp_overlap 900430, overlap 900421 900416 CGGTAGTTGTACTAA GGTGCAAT TTCCT ATTGCACC TTAGTACAGTAAATG TERM 920 900450 - 900430 - H 74 -9.8 -3.15544 | opp_overlap 900421 900416 900430 CGGTAGTTGTACTAA GGTGCAAT TTCCT ATTGCACC TTAGTACAGTAAATG YPK_0791 900476 - 901219 + | LuxR family transcriptional regulator YPK_0792 901850 - 901200 - | autoinducer synthesis protein TERM 921 901757 - 901773 + g 70 -2.2 -4.95957 | opp_overlap 901757 TCACCTCCCAGTTAA GACGAT CCTTA AACGTC TTTTTCCTTAATTTA YPK_0793 903021 - 903671 + | abortive infection protein YPK_0794 904188 - 904517 + | lipoprotein YPK_0795 904585 - 904848 + | insertion element protein TERM 922 905039 - 905029 - g 71 -2.6 -4.96773 | GGAATCAAAAATAAA TTTA CGT TAAA ACTAATTATTTTTAT TERM 923 905148 - 905159 + G 90 -3 -5.84011 | CAGAAGCGTTGGGAT GATA TTTA TATC TTTTTATTTTTTATT YPK_0796 905005 - 905376 + | hypothetical protein YPK_0797 905419 - 905574 + | hypothetical protein YPK_0798 906784 - 907284 + | type VI secretion protein TERM 924 907372 - 907350 - g 74 -6.3 -4.34402 | gap 1, overlap 907351 GTCTGTACAGGAAAA CCGTGCGCAG GGTA CTGCG-ACGA CCGTATTAAAGAATA YPK_0799 907333 - 908877 + | EvpB family type VI secretion protein YPK_0800 908889 - 910241 + | type VI secretion protein TERM 925 910528 - 910545 + G 74 -2.6 -5.09225 | overlap 910530 910531 CTTTGTGTGGTGTCA TTCGCC CTTACA GGCGCA TTTTTTCAATACCCT YPK_0801 910238 - 910924 + | hypothetical protein TERM 926 912011 - 912041 + G 77 -10.4 -3.61398 | GGGTGGCCTTTGATA TCCGTCAGTACCAC AGC GTGGCGATGACGGA TTATTCCCCGAAAGC YPK_0802 910924 - 912660 + | OmpA/MotB domain-containing protein YPK_0803 912664 - 913155 + | Hcp1 family type VI secretion system effector TERM 927 913361 - 913380 + F 100 -9.2 -5.72118 | opp_overlap 913359, overlap 913362 ACGTTGTCATCAACC TCAGGCGG TTCG CCGCCTGC TTTTTTGTGTTTTTT TERM 928 913362 - 913379 + F 100 -12.7 -3.9778 | opp_overlap 913359, overlap 913361 CGTTGTCATCAACCT CAGGCGG TTCG CCGCCTG CTTTTTTGTGTTTTT YPK_0804 913543 - 916185 + | type VI secretion ATPase YPK_0805 916188 - 918536 + | type VI secretion system Vgr family protein TERM 929 920723 - 920710 - g 71 -3.9 -4.75288 | GTACAGTAAAAGAAA TTGAT AAAG ATCAA GCAGAAAGTGCCGAT YPK_0806 918552 - 920849 + | peptidase M23B TERM 930 920861 - 920880 + G 71 -3 -5.00616 | TTAAAAAATTGACAT TGAAATAT TTTT ATATTTTA TTTTTTACACCCCAC TERM 931 920978 - 920967 - g 74 -4.4 -4.84033 | AGACAAAAATGAAAA TGCA ATTT TGCA TGTAAAAAAAAACCA YPK_0807 920836 - 921603 + | hypothetical protein YPK_0808 921699 - 921974 + | insertion element protein TERM 932 922540 - 922514 - f 71 -3.2 -5.01042 | opp_overlap 922530 AATTTAAAGGAAAAA TCATTACACAAA CTA TTTATATAATAA TTTTTTGTATAAGGA TERM 933 922530 - 922540 + F 76 -2.6 -5.36441 | opp_overlap 922514 CATTACACAAACTAT TTAT ATA ATAA TTTTTTGTATAAGGA YPK_0809 922895 - 923407 + | hypothetical protein YPK_0810 923697 - 923846 + | putative phage integrase TERM 934 923977 - 923951 - f 81 -7.2 -4.71776 | opp_overlap 923951 TAAGACGCAAGAAAA CCGAAGTTTGTC ATC GACATCCTCCGG TTTCTTCGTCCCGTA TERM 935 924132 - 924148 + F 76 -10.9 -2.62616 | opp_overlap 924131 924129 924126 TCGAACCAAGGACAC GGGGATT TTC AATCCCC TGCTCTACCGACTGA TERM 936 924575 - 924585 + F 78 -4 -5.09225 | CTGCTTTATTTCTAC TAAG CCC CTTA TTTTTTCCATGCGGT TERM 937 925218 - 925247 + G 77 -4.3 -5.00884 | gap 1 ATGAATAACTCGACC TTTGCTTGCCCTGG CCA TCAGGG-GGGCGAA TTTTTTCGCAAGCAT TERM 938 925267 - 925277 + G 76 -2.4 -5.1925 | TTCGCAAGCATCCTG CAGG ACG CCAG TTTTTTGAATTCTAC TERM 939 925546 - 925560 + G 71 -7 -4.03234 | GTGCGCTGATCCAGG CGGGCG CGA CGCCGG TTTATCTGGAAACGG YPK_0811 924843 - 927005 + | ornithine decarboxylase YPK_0812 927586 - 928545 + | periplasmic binding protein/LacI transcriptional regulator TERM 940 928829 - 928800 - g 71 -3 -4.95155 | gap 1 CGGAGAGGAGAAAAA CTTTACTTCACCG ATCCA CAGTAAAG-AAAG CCGTATTGGCATTAT YPK_0813 928591 - 930090 + | ABC transporter related TERM 941 930205 - 930216 + G 83 -4.4 -5.35721 | TCCTGCTAGACAACT CAAC GACC GTTG TTTTTATTGTTATGT YPK_0814 930123 - 931106 + | monosaccharide-transporting ATPase TERM 942 931166 - 931139 - T 73 -8.5 -3.65351 | opp_overlap 931141 931143 GGACGTTGATCTAAA CAGAGGGCA GCAGTAACAA TGCCCTCTG TAGTAACATTACCCT YPK_0815 933495 - 931351 - | TonB-dependent siderophore receptor TERM 943 932641 - 932676 + g 79 -11.1 -3.57792 | opp_overlap 932651 GGTGGCGTTATAGCT CTCGTCGAAACGGCG ATCACG CGGCGTGTCGACGGG TTTGCCAGTGCGTGG YPK_0816 934588 - 933488 - | periplasmic binding protein YPK_0817 934712 - 934542 - | hypothetical protein YPK_0818 935994 - 934906 - | lytic transglycosylase catalytic TERM 944 935474 - 935498 + g 100 -9.4 -5.18371 | gap 1, opp_overlap 935474 ACGAACGAGATCACA TGCAAAC-CGG AAGT CCGTGTTTGCA TTTTGTTTTGTAGCA TERM 945 936161 - 936137 - R 83 -9.3 -4.015 | gap 1, opp_overlap 936134 936130 936140, overlap 936140 CTATTTAGGAAATAA CAGCGGGGCC TTAATT GGCCCCG-TG TGGTTACTTACTCGG TERM 946 936140 - 936159 + r 86 -12.1 -2.97613 | opp_overlap 936137 936140, overlap 936134 936130 TTTAGGAAATAACAG CGGGGCC TTAATT GGCCCCG TGTGGTTACTTACTC TERM 947 936159 - 936140 - R 83 -12.1 -2.75069 | opp_overlap 936140 936134 936130, overlap 936137 TTTAGGAAATAACAG CGGGGCC TTAATT GGCCCCG TGTGGTTACTTACTC YPK_0819 936437 - 936165 - | protein-tyrosine-phosphatase YPK_0820 937874 - 936615 - | A/G-specific adenine glycosylase YPK_0821 938143 - 938862 + | tRNA (guanine-N(7)-)-methyltransferase YPK_0822 938862 - 939188 + | hypothetical protein TERM 948 939220 - 939237 + F 100 -9.8 -4.91852 | opp_overlap 939220 939219 939217 CTGATCATTAAACAG GGCGCC CTAACC GGCGCC TTTGTTTTTACTGGC TERM 949 939237 - 939220 - f 71 -9.8 -2.68493 | opp_overlap 939220, overlap 939219 939217 CTGATCATTAAACAG GGCGCC CTAACC GGCGCC TTTGTTTTTACTGGC YPK_0823 939299 - 940225 + | glutaminase YPK_0824 940337 - 941071 + | hypothetical protein TERM 950 941095 - 941077 - f 100 -10.2 -4.75472 | overlap 941079 CTTAGAGTAATAAAA GGGGGGGA TAT TCCCCCTC CAACCCCCTCCAAAT TERM 951 941093 - 941079 - f 80 -11.4 -2.66013 | overlap 941077 TAGAGTAATAAAAGG GGGGGA TAT TCCCCC TCCAACCCCCTCCAA TERM 952 943892 - 943881 - g 71 -3 -4.86731 | TTCCTTTAAACAAAA TGAT AAAA ATCA CCACCCACAATTTAT TERM 953 943944 - 943924 - g 81 -12.7 -2.57243 | overlap 943923 943921 943926 GTATTATTACAAGAT GACTCTCTT TCT AAGAGAGTC GGAGAGATTATTGCT TERM 954 944994 - 944975 - g 85 -12.2 -3.28447 | opp_overlap 944974 944975, overlap 944973 TCATTGACGATAATA TTCACGCC GAGT GGCGTGAA ATTAGTCATAATGAA TERM 955 944975 - 944994 + G 78 -12.2 -2.53715 | opp_overlap 944975 944973, overlap 944974 TCATTGACGATAATA TTCACGCC GAGT GGCGTGAA ATTAGTCATAATGAA TERM 956 947511 - 947501 - g 77 -4 -5.03314 | TTGAGGGTGAAAAAA GTAA AAA TTAC CCTTATTCACTTGTT YPK_0825 941575 - 950907 + | virulence determinant TERM 957 950961 - 950934 - T 74 -9.8 -3.14961 | overlap 950932 950930 ATTAGCAGGAAGAGA GGCTGAGGGCAG GTTT CTGCCCTCAGAG ACACCAGTCATACTG YPK_0826 952227 - 951097 - | oxygen-independent coproporphyrinogen III oxidase TERM 958 951918 - 951901 - G 71 -9.1 -3.56643 | opp_overlap 951915, overlap 951878 CTGATAGCCGCTAAA GCGATCG GCTT CGACCGC TCCGGGGTTGGCTTC YPK_0827 952813 - 952220 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YPK_0828 953203 - 952913 - | hypothetical protein YPK_0829 953754 - 953200 - | protein of unknown function YGGT YPK_0830 953902 - 953717 - | hypothetical protein YPK_0831 954863 - 954042 - | pyrroline-5-carboxylate reductase YPK_0832 955694 - 954996 - | alanine racemase domain-containing protein TERM 959 955257 - 955293 + g 81 -13.1 -2.87527 | opp_overlap 955260, overlap 955261 ACTAATGCTGTCAGC CAAGGCGGGGAGTTC ACTCAAG GAAATCCCCGCTTTG CTTTGCTCATCACTG TERM 960 955261 - 955289 + g 85 -10.3 -4.11623 | opp_overlap 955260, overlap 955257 ATGCTGTCAGCCAAG GCGGGGAGTTC ACTCAAG GAAATCCCCGC TTTGCTTTGCTCATC YPK_0833 955714 - 956838 + | twitching motility protein TERM 961 956922 - 956895 - T 100 -15 -4.20783 | opp_overlap 956920 AGGTGATGCAATAAA TTAACCCGGATC GGAT GATCCGGGTCAA GCCGGCGGCTTATTT TERM 962 956920 - 956934 + T 71 -4.2 -4.8543 | opp_overlap 956895, overlap 956922 TCGGATGATCCGGGT CAAGCC GGC GGCTTA TTTTTGTGCGGATTA YPK_0834 958062 - 956947 - | agmatine deiminase YPK_0835 958950 - 958066 - | N-carbamoylputrescine amidase TERM 963 958992 - 958978 - R 95 -5.7 -5.59564 | ATAAATGTAAAAAAA CACCT GCAAG AGGTG TGCAATATTTTAAAC YPK_0836 959552 - 959130 - | Holliday junction resolvase YqgF YPK_0837 960115 - 959552 - | hypothetical protein YPK_0838 961190 - 960231 - | glutathione synthetase YPK_0839 961947 - 961216 - | hypothetical protein TERM 964 961750 - 961768 + g 74 -3.8 -4.9725 | opp_overlap 961762 CCATTGCCCTTCAGC GAGTCGGA CAA TCAGATTC TTTTTATCTGCCCGT YPK_0840 962202 - 962056 - | hypothetical protein YPK_0841 962969 - 962262 - | deoxyribonuclease I TERM 965 962732 - 962751 + g 80 -4.2 -5.31456 | gap 1, opp_overlap 962732, overlap 962735 962737 CATGTTCCCATTCAA T-CCGCGCG GCT CGCGCTGCA TTTTTTCTGGGTTGA TERM 966 962735 - 962747 + g 72 -10.5 -2.96157 | opp_overlap 962732, overlap 962732 962737 GTTCCCATTCAATCC GCGCG GCT CGCGC TGCATTTTTTCTGGG YPK_0842 963630 - 963067 - | protein of unknown function DUF335 SprT TERM 967 963694 - 963728 + r 78 -10.6 -3.37533 | opp_overlap 963696, overlap 963688 963696 GGGTGCATACAAATA AACCCCCCTGCCAGCG TGT TGCTTACAGGGGGGTC TTCATCGTTTTACCG TERM 968 963726 - 963696 - R 100 -14.7 -4.62441 | opp_overlap 963694 963688 963696 GTGCATACAAATAAA CCCCCCTGCCAGC GTGTT GCTTACAGGGGGG TCTTCATCGTTTTAC TERM 969 963696 - 963726 + r 100 -13.2 -3.25111 | opp_overlap 963696, overlap 963694 963688 GTGCATACAAATAAA CCCCCCTGCCAGCG TGT TGCTTACAGGGGGG TCTTCATCGTTTTAC YPK_0843 964925 - 963771 - | methionine adenosyltransferase YPK_0844 965743 - 965886 + | hypothetical protein YPK_0845 966132 - 968111 + | arginine decarboxylase TERM 970 968142 - 968161 + F 100 -8.6 -5.24129 | opp_overlap 968142 TCAGTATCGATTAAA GGGCAAAC TCAG GTTTGTCC TTTTTTGTGCCCAGA TERM 971 968198 - 968180 - f 100 -16 -4.36914 | opp_overlap 968180 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 972 968180 - 968198 + F 100 -16 -3.07307 | opp_overlap 968180 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_0846 968311 - 968769 + | transposase IS200-family protein TERM 973 968843 - 968875 + F 100 -11.3 -4.36914 | opp_overlap 968850, overlap 968847 968849 968850 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTGTGCCCAGAAA TERM 974 968847 - 968871 + F 100 -9.9 -4.77173 | opp_overlap 968850, overlap 968843 968849 968850 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTGTGCCCA TERM 975 968849 - 968869 + F 100 -12.5 -3.99938 | opp_overlap 968850, overlap 968847 968843 968850 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTGTGCC TERM 976 968868 - 968850 - f 100 -16 -4.8048 | opp_overlap 968849 968847 968843 968850 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGTGC TERM 977 968850 - 968868 + F 100 -16 -2.98878 | opp_overlap 968850, overlap 968849 968847 968843 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGTGC TERM 978 968910 - 968892 - g 100 -16 -4.36914 | opp_overlap 968892 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 979 968892 - 968910 + G 100 -16 -3.07307 | opp_overlap 968892 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_0847 968878 - 969033 + | hypothetical protein YPK_0848 969023 - 969481 + | transposase IS200-family protein TERM 980 969559 - 969583 + T 88 -9.9 -4.1552 | opp_overlap 969562, overlap 969561 969562 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGACAAAGTG TERM 981 969561 - 969581 + T 100 -12.5 -3.6761 | opp_overlap 969562, overlap 969559 969562 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGACAAAG TERM 982 969580 - 969562 - T 100 -16 -4.8048 | opp_overlap 969561 969559 969562 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACAAA TERM 983 969562 - 969580 + T 100 -16 -2.80244 | opp_overlap 969562, overlap 969561 969559 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACAAA TERM 984 969657 - 969683 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 969646, overlap 969652 969658 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 985 969658 - 969684 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 969646, overlap 969652 969657 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 986 969742 - 969770 + T 72 -9.6 -3.14564 | gap 1, overlap 969745 GGGGTTTGTCAGCAG T-CTGACGCCCCA ACAG TGGGGCGTCTGCA TTGATAAGAGACTGG TERM 987 969745 - 969766 + T 100 -15.9 -2.56596 | overlap 969742 GTTTGTCAGCAGTCT GACGCCCCA ACAG TGGGGCGTC TGCATTGATAAGAGA YPK_0849 970547 - 969795 - | peptidase M48 Ste24p TERM 988 969927 - 969941 + g 88 -7 -5.0133 | GGTTACCAGACCGTT CGGGTC AAT GCCCCG TTTTTTCAGCAAATC TERM 989 970847 - 970857 + H 71 -4.6 -4.63218 | ATGGTTTGTCGCTGT GCGG TGG CTGC TTTTGTTCACCCCAA YPK_0850 971021 - 973015 + | transketolase TERM 990 973174 - 973189 + F 100 -10.4 -5.82316 | opp_overlap 973174 ATGCACCTGTTAAAA GACCGC TTTT GCGGTC TTTTTTTTGACTAAT TERM 991 973189 - 973174 - f 91 -10.4 -4.09864 | opp_overlap 973174 ATGCACCTGTTAAAA GACCGC TTTT GCGGTC TTTTTTTTGACTAAT TERM 992 973232 - 973242 + F 70 -5.4 -4.49344 | overlap 973219 973226 TGTGCCCTTTTTCAG GGAA ATA TTCC TTTTATCATGACTTT TERM 993 973347 - 973326 - f 73 -5.8 -4.42653 | opp_overlap 973327, overlap 973327 973328 ATCCCACCGAGAAAA CCCGGCCA GTATTA TGGCCGAA TTGTGATAATACGAT YPK_0851 973430 - 974446 + | D-erythrose-4-phosphate dehydrogenase TERM 994 975095 - 975077 - g 100 -16 -3.56568 | opp_overlap 975069 975066 975094 GAAGCATTGGGTAAA GCGCTGGG TAA CCCAGCGC GTCCAATGGTTGCTA TERM 995 975471 - 975456 - g 78 -7.6 -4.31329 | opp_overlap 975464 TGAAAAATGCCAAAA CCATTC TGTG GAATGG TCCGGTTGGTGTGTT YPK_0852 974549 - 975712 + | phosphoglycerate kinase YPK_0853 975832 - 976911 + | fructose-bisphosphate aldolase, class II TERM 996 976932 - 976959 + F 100 -20 -3.62046 | opp_overlap 976939, overlap 976939 GTCTGTTCGGACTGA CCTCAAAGGCCC TACG GGGCCTTTGAGG TTATTGACAAAGTGC TERM 997 976952 - 976939 - f 78 -9.5 -3.61178 | opp_overlap 976939 976932 CGGACTGACCTCAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 998 976939 - 976952 + F 78 -9.5 -3.72051 | opp_overlap 976939, overlap 976932 CGGACTGACCTCAAA GGCCC TACG GGGCC TTTGAGGTTATTGAC TERM 999 977032 - 977058 + F 72 -10.1 -2.88849 | gap 1, opp_overlap 977021, overlap 977027 977033 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1000 977033 - 977059 + F 84 -10.1 -3.82218 | gap 1, opp_overlap 977021, overlap 977027 977032 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1001 977137 - 977124 - f 78 -9.5 -3.58343 | opp_overlap 977124 GTCAGCAGTCTGAAA GGCCC TACG GGGCC TTTTTTCGTTGCTGA TERM 1002 977124 - 977137 + F 100 -9.5 -5.30155 | opp_overlap 977124 GTCAGCAGTCTGAAA GGCCC TACG GGGCC TTTTTTCGTTGCTGA TERM 1003 977277 - 977296 + F 93 -4.2 -5.78622 | overlap 977265 GGCCGTTGGCTAGAG TCGCCAGC GTTA GATGGTGA TTTTTTTTGGCGTAA TERM 1004 977314 - 977328 + F 100 -7.8 -5.26316 | TTTTTTGGCGTAATT GCTCCT GTA GGGAGC TTTTTTGTAGGATGG TERM 1005 977898 - 977927 + G 74 -10.7 -2.79679 | overlap 977921 977922 977923 AGCCGCGAGCCGAAC CGCCGTACCGACA TGAT TGTCGGTGTGGCA TATGATGCCGATATT YPK_0854 977349 - 978218 + | MscS mechanosensitive ion channel TERM 1006 978254 - 978269 + F 85 -7.5 -4.76041 | opp_overlap 978254 GGTAAATAGATTAAA CGGGC CTCAGT GCCCG TTTTTACTCGCTCTG TERM 1007 978269 - 978254 - f 72 -7.5 -3.97308 | opp_overlap 978254 GGTAAATAGATTAAA CGGGC CTCAGT GCCCG TTTTTACTCGCTCTG TERM 1008 978912 - 978932 + G 73 -7.5 -4.30001 | overlap 978909 GCCCTTGGTTTGCTT TAGGGGCGG TCA CGGCCTCTA TTGTTTGGTTTTTTG YPK_0855 978464 - 979081 + | L-lysine exporter TERM 1009 979486 - 979471 - g 77 -6.8 -4.64766 | TGCAGATGCCAAAAA GCAGGT CGAT ACCCGC GTCGCGCAATACTTT YPK_0856 979250 - 980050 + | hypothetical protein TERM 1010 980066 - 980034 - T 71 -4.9 -4.64676 | CTACTGCCAATAAAA CAGTTGCTGCTCA GTAAACA TAAACAGCTACTG CCCAATAAACGAGTC YPK_0857 980969 - 980061 - | LysR family transcriptional regulator YPK_0858 981311 - 981967 + | ribose 5-phosphate isomerase TERM 1011 981971 - 982007 + F 71 -2.2 -5.22039 | overlap 981962 GTGATTGGCTAAAAT TTTTCAGGGTGTCGTT TATTT GGCTTCACCCTGATAA TTTTTTGCCTTTGAA TERM 1012 983469 - 983459 - g 77 -6.8 -4.63542 | GATAATGCGGAAAAA GCCT TGC AGGC GATGAAGGCCATTCC YPK_0859 982274 - 983515 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 1013 983559 - 983533 - T 88 -10.8 -3.8901 | opp_overlap 983529 983528 CCTGAAATGATTAAA CGCCTGGGATCC ATA GGATCTCAGGTG TGAGGTTATTGACAA TERM 1014 983638 - 983664 + T 72 -7.2 -3.9749 | gap 1, opp_overlap 983626, overlap 983637 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 1015 983727 - 983753 + T 100 -22.4 -6.02914 | TTGTCAGCAGTCTGA CACCGGGGATCC ATA GGATCCCCGGTG TTTTTTTTATCTCGA YPK_0860 984376 - 983780 - | 5-formyltetrahydrofolate cyclo-ligase TERM 1016 984224 - 984212 - G 80 -9.1 -4.17516 | GTCAAAGGAGAGAAA CACGG CTA CCGTG TGAGCTTGCTGGATT YPK_0861 985069 - 984740 - | hypothetical protein YPK_0862 985406 - 985984 + | yecA family protein TERM 1017 986916 - 986930 + G 76 -9.2 -3.91032 | opp_overlap 986913 986909, overlap 986913 ATGGCAAATTTACCC CCGCTC AGC GGGCGG TTTATGACATCGTTC YPK_0863 986072 - 987385 + | peptidase M24 YPK_0864 987522 - 988700 + | 2-polyprenyl-6-methoxyphenol 4-hydroxylase YPK_0865 988750 - 990093 + | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YPK_0866 990059 - 990298 + | hypothetical protein TERM 1018 990657 - 990667 + F 75 -8.2 -3.76167 | opp_overlap 990656, overlap 990655 TTGTCGCCTGAAGAG GGCG CCT CGCC TATTTTAGCTTATGG YPK_0867 990814 - 991911 + | glycine cleavage system T protein YPK_0868 991980 - 992366 + | glycine cleavage system H protein TERM 1019 992397 - 992372 - f 71 -9 -3.23979 | overlap 992367 TGAAGAGTAACTCAA GTGAGGGCCA TTTTAT TGGCCCTGAC GCCGAGTAGGTTAAA YPK_0869 992578 - 995457 + | glycine dehydrogenase TERM 1020 995499 - 995474 - f 82 -8.2 -4.26903 | opp_overlap 995474 995474, overlap 995478 CTCATCTGAGCAAAA CCAAGGGCCG TGAAAG CGGCCCTGAG GTTATTGACAAAGTG TERM 1021 995495 - 995478 - f 80 -9.8 -3.71672 | opp_overlap 995474 995474, overlap 995474 TCTGAGCAAAACCAA GGGCCG TGAAAG CGGCCC TGAGGTTATTGACAA TERM 1022 995574 - 995600 + F 72 -7.2 -3.9749 | gap 1, opp_overlap 995562, overlap 995569 995573 CATCCATGTAGGCTC GAG-CCGCGCC TTCCCT GGCGCGGACGC TTTACTCTTCTGCCT YPK_0870 995835 - 996272 + | hypothetical protein TERM 1023 997162 - 997175 + F 70 -5.3 -4.47183 | overlap 997158 CAACTAGCCGACATT CCATA ATGT TATGG TTTGTTTAGATAATA TERM 1024 997391 - 997406 + G 71 -4.8 -4.49981 | opp_overlap 997391 TGTTTGTTTTAATTA CTTTAT GAAC ATAAAG TTTTATCGTGGTCTG TERM 1025 997831 - 997845 + G 70 -10 -3.1506 | CGATTTCATCTACCT CTACCG ATG CGGTAG TTGGTAGCCAGCTTT YPK_0871 997332 - 999482 + | YadA domain-containing protein YPK_0872 999586 - 1000689 + | hypothetical protein YPK_0873 1000891 - 1001592 + | hemolysin III family channel protein YPK_0874 1001884 - 1002381 + | hypothetical protein TERM 1026 1002438 - 1002411 - T 100 -18.6 -5.23292 | opp_overlap 1002417 1002419 TGATATAAAACAAAA TACAGAGACCGG TTAA CCGGTCTCTGTA GAGTAGAACTCTTTA TERM 1027 1002417 - 1002432 + T 75 -10.4 -2.89564 | opp_overlap 1002411, overlap 1002419 AAAACAAAATACAGA GACCGG TTAA CCGGTC TCTGTAGAGTAGAAC TERM 1028 1002439 - 1002449 + T 73 -5.4 -4.66814 | TAACCGGTCTCTGTA GAGT AGA ACTC TTTATTATTTATCTT YPK_0875 1003446 - 1002454 - | hypothetical protein TERM 1029 1003053 - 1003064 + g 73 -7.2 -4.14739 | ATTCAGTAAAGATTT CCGC CAGC GCGG TTTTGGCCTGGCTAC TERM 1030 1003620 - 1003606 - H 80 -2.8 -5.52384 | opp_overlap 1003606 1003608, overlap 1003608 GGGCGATTAAAAAAA TGCACT TGC AGTGTA TTTAGTACCTTAACC TERM 1031 1003644 - 1003663 + H 78 -10 -3.54382 | overlap 1003660 CTTAACCCCCTATCC CGGGAGTG GTAA CATTCCCG TTAGTTATATTAACG YPK_0876 1003763 - 1004029 + | hypothetical protein TERM 1032 1004195 - 1004185 - f 70 -5.4 -4.42386 | TCCGCAGCCAGAAAA GGAT TAA ATCC TGTCAGGGGGAAATC YPK_0877 1004287 - 1004466 + | hypothetical protein YPK_0878 1004435 - 1005133 + | two component transcriptional regulator YPK_0879 1005158 - 1006591 + | integral membrane sensor signal transduction histidine kinase TERM 1033 1007122 - 1007141 + G 71 -9.2 -3.55444 | GCTGGCACTGAGTGA TGCGCGGG GTAT CCAGCGCA TTTCGCCACTCAGCG YPK_0880 1006676 - 1008133 + | inner membrane CreD family protein TERM 1034 1008182 - 1008154 - T 84 -9.7 -3.84825 | opp_overlap 1008159, overlap 1008155 CGCAGCTAGACTAAA CTTAACGGGCA TATCGGG TGCCCGTTAAA TTGAGCTCTGATGTA TERM 1035 1008181 - 1008155 - T 79 -11 -2.90573 | opp_overlap 1008159, overlap 1008154 GCAGCTAGACTAAAC TTAACGGGCA TATCGGG TGCCCGTTAA ATTGAGCTCTGATGT YPK_0881 1008736 - 1008218 - | flavodoxin YPK_0882 1009748 - 1008807 - | integrase family protein YPK_0883 1010446 - 1009883 - | CI repressor YPK_0884 1010585 - 1010815 + | hypothetical protein YPK_0885 1010818 - 1011351 + | regulatory CII family protein YPK_0886 1011361 - 1011546 + | hypothetical protein YPK_0887 1011558 - 1011875 + | gpB bacteriophage P2-like protein YPK_0888 1011942 - 1012814 + | DNA adenine methylase YPK_0889 1012853 - 1013080 + | hypothetical protein YPK_0890 1013092 - 1013364 + | putative relication initiation protein YPK_0891 1013368 - 1014372 + | phosphoadenosine phosphosulfate reductase TERM 1036 1014405 - 1014433 + G 71 -10.2 -2.77999 | overlap 1014400 1014424 CGCATTACCCCAACT CCGCCGTTGCCT TATCC GGGCAGCGGCGC TGCTGTTACTCAATG TERM 1037 1015352 - 1015341 - g 70 -2.2 -4.87786 | GCAACGTCACAAAAA CACG TCGG CATG TTCCTGACCGTCACC TERM 1038 1016230 - 1016218 - g 85 -10.5 -4.11216 | opp_overlap 1016209 TTTTGACTTTGAAAA GCGCC TCT GGCGC GCCTCGGAGTCCTGT YPK_0892 1014369 - 1016648 + | replication gene A YPK_0893 1016641 - 1017027 + | putative GP46 protein TERM 1039 1017414 - 1017394 - g 83 -7.5 -4.78753 | overlap 1017396 TGAATATGAACAAAA CAGCCCCCA AAA TGAGGGCCA TCAATCAAACGGTGG TERM 1040 1017412 - 1017396 - g 85 -10.1 -3.99924 | overlap 1017394 AATATGAACAAAACA GCCCCCA AAA TGAGGGC CATCAATCAAACGGT YPK_0894 1017227 - 1017442 + | hypothetical protein YPK_0895 1017685 - 1017419 - | transcriptional activator Ogr/delta YPK_0896 1018761 - 1017736 - | PBSX family phage portal protein YPK_0897 1020545 - 1018758 - | hypothetical protein TERM 1041 1019710 - 1019729 + g 74 -9.3 -3.65514 | overlap 1019707 CGCCATTTATCATGG GTGGCCA TGGCAC TGGCCAC TTCATTTAATTTGGC YPK_0898 1020712 - 1021566 + | putative capsid scaffolding protein YPK_0899 1021621 - 1022652 + | P2 family phage major capsid protein YPK_0900 1022663 - 1023361 + | small terminase subunit YPK_0901 1023457 - 1023909 + | head completion protein TERM 1042 1024230 - 1024216 - g 73 -5.6 -4.53163 | opp_overlap 1024216, overlap 1024208 TGATAGACGATAAAA CCGCCA TGG TGGTGG TGTCGATGGGGATTA YPK_0902 1023906 - 1024394 + | hypothetical protein TERM 1043 1024504 - 1024477 - g 71 -4.8 -4.56597 | gap 1, opp_overlap 1024478, overlap 1024478 1024479 GTTGCCGCCTAAAAA GCGCCAGCGGC TGTTATG GCGGCTGGC-C AAGTACGGGGTGATG TERM 1044 1024612 - 1024594 - g 71 -10.2 -2.83345 | GCGACAGACCAACCA GCGCGGCA AGA TGCTGCGC AATATGCCGAAATTG YPK_0903 1024397 - 1025068 + | putative phage gene TERM 1045 1025140 - 1025130 - g 83 -2.4 -5.53991 | TATTGACCAAAAAAA CCAG TTA CAGG GCGAAACCAAAGAGA TERM 1046 1025283 - 1025273 - g 73 -5.4 -4.63527 | CCAGCACGGTAAAAA GTTG TGT CAAC GCTGCGATGCTGAAT YPK_0904 1025095 - 1026234 + | putative phage gene YPK_0905 1026231 - 1026683 + | putative phage gene YPK_0906 1026693 - 1026983 + | holin family protein 2 YPK_0907 1026935 - 1027321 + | hypothetical protein TERM 1047 1027334 - 1027353 + G 70 -7.8 -3.86346 | opp_overlap 1027333, overlap 1027323 TGATGGCCAAGATAT TGGCGCTG ATTG CAGCGGCA TTTGTCGCCGGGTGG YPK_0908 1027321 - 1027662 + | hypothetical protein YPK_0909 1027812 - 1028078 + | putative phage gene YPK_0910 1028266 - 1030242 + | TP901 family phage tail tape measure protein YPK_0911 1030242 - 1030574 + | putative phage gene TERM 1048 1030909 - 1030897 - g 70 -7.7 -3.85817 | opp_overlap 1030886 1030883 ATCCGCTTCTATAAA GCTGA TAT TCAGC AAGATGTGGTTATTC YPK_0912 1030567 - 1031751 + | putative phage gene YPK_0913 1031744 - 1032379 + | phage-like protein TERM 1049 1032738 - 1032763 + G 87 -6.9 -5.16237 | gap 1, opp_overlap 1032722 GCCACCGCTAACGGG GTGCAGGGTAAT AAC ATCACCC-GCAC TTTTTTAATGGAGTT YPK_0914 1032390 - 1034159 + | tail fiber repeat 2-containing protein YPK_0915 1034170 - 1034598 + | tail assembly chaperone gp38 TERM 1050 1035212 - 1035224 + GF 91 -7.7 -4.8048 | AAAAAGAACGTACCG CAGCA GGA TGCTG TTTTTACTCTGGCCA YPK_0916 1034588 - 1035319 + | putative phage gene TERM 1051 1035690 - 1035678 - gf 82 -6.9 -4.83169 | AGTGTGTCAGAAAAA CGCGA AGC CCGCG CAGGTGGTAAAACGG YPK_0917 1035285 - 1035833 + | hypothetical protein TERM 1052 1036633 - 1036614 - g 73 -7.8 -4.08767 | TGCATCTGCCGAAAA TGGCCCGT GTTG AGGGGCCA AGCGAGGCGGTGACC YPK_0918 1035830 - 1037485 + | hypothetical protein TERM 1053 1037503 - 1037519 + F 100 -10.8 -5.04385 | GATCTCGCCTAATCT GCCCGC CGCGC GCGGGC TTTTTTACGCCTATC YPK_0919 1037661 - 1037858 + | hypothetical protein YPK_0920 1038281 - 1039180 + | tyrosine recombinase XerD YPK_0921 1039211 - 1039927 + | thiol:disulfide interchange protein DsbC TERM 1054 1040189 - 1040214 + G 79 -11.1 -3.56643 | overlap 1040190 GATGCTGACGGCGCG ACCAGTACCGC GTTG GCGGTGCTGGC TTTGCGCAGTATGGG TERM 1055 1040190 - 1040213 + G 90 -14.6 -2.73771 | overlap 1040189 ATGCTGACGGCGCGA CCAGTACCGC GTTG GCGGTGCTGG CTTTGCGCAGTATGG TERM 1056 1040926 - 1040916 - g 71 -4.6 -4.65078 | ACACCTTGAATAAAA CCCG GCG CGAG ATAGAACAGGGTATG YPK_0922 1039934 - 1041667 + | single-stranded-DNA-specific exonuclease RecJ TERM 1057 1041982 - 1041960 - f 100 -13.4 -4.0802 | ACTGGAAGAAGTAAA CGCCGAGCTG GAA CAGCCCGACG TCTGGAATGAACCCG YPK_0923 1042012 - 1042944 + | peptide chain release factor 2 YPK_0924 1042954 - 1044471 + | lysyl-tRNA synthetase TERM 1058 1044500 - 1044515 + F 100 -11.8 -4.7497 | ACGATAAATTCCTCA GGGCGC TACG GCGCCC TTTTTACTGAGTCAG YPK_0925 1044904 - 1046118 + | integrase family protein TERM 1059 1046203 - 1046228 + T 76 -10.7 -2.62515 | opp_overlap 1046203 TATTTAAACTAACAA CTTGAAATTAA AGGA TTAATTTCAAG TAGTGTCCACGCATT TERM 1060 1046228 - 1046203 - T 88 -10.7 -3.90425 | opp_overlap 1046203 TATTTAAACTAACAA CTTGAAATTAA AGGA TTAATTTCAAG TAGTGTCCACGCATT TERM 1061 1046283 - 1046260 - T 72 -8 -3.7829 | opp_overlap 1046264, overlap 1046263 ACCACACTGAGTAAA CATGGCCCCG CTTG CGGGGCTTTG TTGCATGTTGTGACA TERM 1062 1046264 - 1046279 + T 100 -11.8 -4.26003 | opp_overlap 1046263 1046260 CACTGAGTAAACATG GCCCCG CTTG CGGGGC TTTGTTGCATGTTGT YPK_0926 1048638 - 1046941 - | hypothetical protein TERM 1063 1047535 - 1047561 + g 78 -12.2 -2.52464 | overlap 1047517 GCGCTGACTGACGCC GGCGCGCTGTTG CTG CAACTGCTCGCC TGGCTTGACGGCGGG TERM 1064 1047702 - 1047723 + g 71 -10.1 -2.83907 | overlap 1047701 CCTCACTGCCAGCCA TCGGTACCG GTAG CGGTACCGC GTTATATTCCTGTGC YPK_0927 1049189 - 1048635 - | hypothetical protein TERM 1065 1049124 - 1049136 + g 77 -4.1 -5.0133 | TATTGACATAGAGAG CGTCA CAA TGATG TTTTTTAGCGGAATA YPK_0928 1049892 - 1049182 - | putative bacteriophage protein TERM 1066 1049822 - 1049854 + g 71 -4.8 -4.60041 | opp_overlap 1049809 1049823 1049824, overlap 1049823 1049823 AACGCCCAGGGATGA AC-GGCCACGGTCGAG CAG CT-GACCGGGGCCAGA TTTTTCGGAATGCGT TERM 1067 1049852 - 1049823 - G 76 -10.7 -3.18383 | gap 1, opp_overlap 1049822 1049823 1049823, overlap 1049809 1049824 ACGCCCAGGGATGAA CGGCCACGGTCGAG CAG CT-GACCGGGGCCA GATTTTTCGGAATGC TERM 1068 1049851 - 1049824 - G 78 -12 -2.50816 | gap 1, opp_overlap 1049823 1049823 1049822, overlap 1049823 CGCCCAGGGATGAAC GGCCACGGTCGAG CAG CT-GACCGGGGCC AGATTTTTCGGAATG YPK_0929 1050407 - 1049889 - | tail assembly chaperone gp38 YPK_0930 1052002 - 1050407 - | tail fiber repeat 2-containing protein TERM 1069 1050526 - 1050510 - G 73 -2.2 -5.08824 | TTTTGAGTCAAAAAA GAGCCT GGATA AGCCTC TCCAGCACCGAGCAC TERM 1070 1050901 - 1050934 + g 83 -4.7 -5.252 | opp_overlap 1050904, overlap 1050903 1050904 CTGGCCCCATTTCAA CGATTGCTGATAAAA GATT TTTTATCAGCAAATA TTTTTTATGGGGATC TERM 1071 1050903 - 1050932 + g 83 -9.5 -4.25873 | opp_overlap 1050904, overlap 1050901 1050904 GGCCCCATTTCAACG ATTGCTGATAAAA GATT TTTTATCAGCAAA TATTTTTTATGGGGA TERM 1072 1050931 - 1050904 - G 81 -13 -2.73364 | opp_overlap 1050903 1050901 1050904 GCCCCATTTCAACGA TTGCTGATAAAA GATT TTTTATCAGCAA ATATTTTTTATGGGG TERM 1073 1050904 - 1050931 + g 84 -13 -3.14801 | opp_overlap 1050904, overlap 1050903 1050901 GCCCCATTTCAACGA TTGCTGATAAAA GATT TTTTATCAGCAA ATATTTTTTATGGGG YPK_0931 1052635 - 1052012 - | putative bacteriophage protein YPK_0932 1053812 - 1052628 - | putative bacteriophage protein TERM 1074 1053676 - 1053664 - G 74 -9.1 -3.77464 | opp_overlap 1053662 1053675 AGAGCAGTGATCAAA CGCCA GAA TGGCG ACATTTGTGACGTGT YPK_0933 1054138 - 1053809 - | hypothetical protein YPK_0934 1054293 - 1054135 - | putative bacteriophage tail protein YPK_0935 1054580 - 1054290 - | hypothetical protein YPK_0936 1055749 - 1054583 - | hypothetical protein TERM 1075 1054941 - 1054929 - G 75 -7.7 -4.21275 | TCAATTGATTGAAAA TCACC GCC GGTGA CGTCCAGTGTGCGAC YPK_0937 1056447 - 1055746 - | phage-like protein TERM 1076 1056050 - 1056063 + gr 74 -9.5 -3.34332 | overlap 1056052 1056060 CCATTTTGCCGTTTA GCCGC TGAC GCGGC GTTTTCTGTGGTCGT TERM 1077 1056052 - 1056064 + gr 79 -6.9 -4.58424 | overlap 1056050 1056060 ATTTTGCCGTTTAGC CGCTG ACG CGGCG TTTTCTGTGGTCGTA YPK_0938 1056913 - 1056407 - | phage-like protein YPK_0939 1057362 - 1056910 - | head completion protein TERM 1078 1057069 - 1057083 + g 83 -4.2 -5.47159 | opp_overlap 1057059 CAAATCCGCCTTGGC GCGG GCATAAA CCGC TTTTTTATATTGAGC TERM 1079 1057464 - 1057494 + r 73 -7.4 -4.16284 | overlap 1057466 CTGGCCGGGTGACGG TACAGCCCCGCGAC AGG GTCAGGGGGCGGTG TTTATTGCCGCGTGT TERM 1080 1057466 - 1057492 + r 70 -7.8 -3.67877 | overlap 1057464 GGCCGGGTGACGGTA CAGCCCCGCGAC AGG GTCAGGGGGCGG TGTTTATTGCCGCGT TERM 1081 1057501 - 1057517 + r 74 -5 -4.77173 | GGGGCGGTGTTTATT GCCGCG TGTTC CTCGGC TTTCTTTTCTAAAGC YPK_0940 1058225 - 1057482 - | small terminase subunit TERM 1082 1057602 - 1057620 + g 90 -8.9 -4.62471 | AAATCCTTCCGCCTG GGCCAAT AATTC ATTGGCC TTTTTCAGCGTTGGA YPK_0941 1059415 - 1058243 - | P2 family phage major capsid protein YPK_0942 1060433 - 1059498 - | capsid scaffolding TERM 1083 1059564 - 1059578 + g 77 -2.9 -5.24129 | TTGGGTGGTGACTTG TTCAA GTTTG TTGAA TTTTTTATCAGCAGC TERM 1084 1060933 - 1060921 - g 74 -2.7 -5.15381 | opp_overlap 1060921, overlap 1060913 AACACACTGAAAAAA TTCAC GCC ATGAA TTTAGAAGCGGCGGC TERM 1085 1061258 - 1061268 + G 73 -5.4 -4.59109 | GTCAGCCTCCCGCCC TCAG TCG CTGA TTTTTCGACGCTATA TERM 1086 1062507 - 1062479 - g 88 -7.3 -5.1675 | overlap 1062483 CCAGGCAGCAAAAAA CCAATGTGCCAGC CAT GCCGGCACAGCGT GGCACGTTCAGCATC TERM 1087 1062503 - 1062483 - g 95 -13.3 -3.96447 | overlap 1062479 GCAGCAAAAAACCAA TGTGCCAGC CAT GCCGGCACA GCGTGGCACGTTCAG YPK_0943 1060611 - 1062704 + | hypothetical protein YPK_0945 1063819 - 1062998 - | P4 alpha zinc-binding domain-containing protein YPK_0944 1062691 - 1063056 + | putative portal vertex protein TERM 1088 1063056 - 1063069 + gF 70 -3.7 -4.82901 | overlap 1063057 GTCACCCAACCATTG ACCGC GTTG GCGGC TTTTTCTGCGGACAA TERM 1089 1064027 - 1064065 + FH 74 -6.6 -4.2828 | opp_overlap 1064031, overlap 1064015 1064031 TTGCTCCGTGGTGGA TAAACGCCCCGGCAGTAT TGA GTGATGTCGGGGCGTTCC TTTTGATACATCCGC TERM 1090 1064031 - 1064061 + FH 93 -11.8 -3.72073 | opp_overlap 1064031, overlap 1064015 1064027 TCCGTGGTGGATAAA CGCCCCGGCAGTAT TGA GTGATGTCGGGGCG TTCCTTTTGATACAT TERM 1091 1064391 - 1064378 - g 78 -5.2 -5.00616 | TTGTGGTGCAAAAAA CGGC TTATAT GCCG TGGAAAGGGAAAGGC YPK_0946 1064119 - 1064445 + | hypothetical protein YPK_0947 1064438 - 1064590 + | hypothetical protein YPK_0948 1064804 - 1064604 - | phage transcriptional regulator, AlpA TERM 1092 1064669 - 1064720 + g 74 -6.6 -4.40993 | gap 1, opp_overlap 1064674 TCACCTCACTTTCAA CAAAAGCGATAGCCCGCCCCC CTATTTTTATC GGTGGCGGGA-AGCGCTTTTG TTTTAATAATTTATA TERM 1093 1064905 - 1064892 - R 75 -3.1 -5.18866 | opp_overlap 1064892, overlap 1064887 GGCAAATAAATAAAA GGAAC CTTT ATTCC TGTCGTTTTAGGTCA YPK_0949 1065642 - 1064986 - | hypothetical protein YPK_0950 1066020 - 1065655 - | hypothetical protein YPK_0951 1066289 - 1067431 + | filamentation induced by cAMP protein Fic TERM 1094 1069192 - 1069173 - g 80 -6.5 -4.7373 | CTATCTCAGTAAAAA TCCAGAT GATCCT ATCTGGA CTGAAAGAAAGAAAA YPK_0952 1067938 - 1069470 + | S-type pyocin domain-containing protein TERM 1095 1069629 - 1069612 - g 71 -2.7 -4.93877 | gap 1, overlap 1069615 GTGGAGCAAATAAAA TGAGCCTC AAC GAAGC-CA AAGAAGCCTACAAGC YPK_0953 1069467 - 1069664 + | hypothetical protein TERM 1096 1069715 - 1069735 + F 100 -11.2 -5.14985 | opp_overlap 1069714 1069715 CGCTACCCAATCAAG GCCACTGT CAGCA ACAGTGGC TTTTTGTGTATTTGC TERM 1097 1069735 - 1069715 - f 83 -11.9 -2.62192 | opp_overlap 1069715, overlap 1069714 CGCTACCCAATCAAG GCCACTGTC AGC AACAGTGGC TTTTTGTGTATTTGC YPK_0954 1070002 - 1070205 + | hypothetical protein YPK_0955 1070252 - 1070536 + | colicin D TERM 1098 1071624 - 1071640 + GF 72 -7.9 -3.76835 | AGTTCTCAAGCATGG GTCGCAG AAA CAGCGAC TTATATGTTGTTCCG TERM 1099 1072477 - 1072467 - gf 75 -3.2 -5.11836 | ATACTCAAAACAAAA GCTC AAA AAGC ACTTTTACAACAGCA YPK_0956 1070946 - 1073105 + | hypothetical protein TERM 1100 1073324 - 1073313 - gf 72 -5.8 -4.36914 | overlap 1073315 CCTGGTTTCAGAAAA TGGG GCTA CCCA GCTCTAGGCTGACAC YPK_0957 1073075 - 1073842 + | hypothetical protein TERM 1101 1074084 - 1074113 + F 72 -7.3 -3.96618 | overlap 1074087 AATCATGATTTGGTT GAATATTCCTACA TTCT TGTGTGAATATTC TTATTTGAAGTTGCG YPK_0958 1074448 - 1075227 + | hypothetical protein YPK_0959 1075483 - 1075749 + | PAAR repeat-containing protein YPK_0960 1076168 - 1075848 - | hypothetical protein YPK_0961 1076848 - 1076168 - | PadR-like family transcriptional regulator TERM 1102 1076257 - 1076281 + g 76 -9.4 -3.80733 | gap 1 TGTCTACCGCAGCCA GTAGCGCCGTA TTAA TACG-CGCTAC TTGTTCTGGCGTGAG TERM 1103 1076969 - 1076951 - R 75 -7.4 -4.27861 | opp_overlap 1076951 1076962, overlap 1076952 AAGATATATCTAAAA CGCGTTAC TGC GCAACGCA TCCCGCGTGCTTTTA TERM 1104 1077094 - 1077081 - R 77 -3.9 -5.21709 | overlap 1077092 GGGGATATCAAAAAA TGATT TTTA AATCA AAATGTTGAACTGGG TERM 1105 1077284 - 1077272 - R 74 -4.8 -4.82901 | opp_overlap 1077242 CCCTTCTGATAAAAA GGTG AGCAG CACC AAACGGTTATTGGCT YPK_0962 1078148 - 1077291 - | putative lipoprotein YPK_0963 1078820 - 1078524 - | hypothetical protein TERM 1106 1079799 - 1079772 - R 100 -12.7 -3.57792 | opp_overlap 1079789 GGATTTACCCTCAAA CCCGACAGCAG ATTTTG CCGCTGCCGGG GGCGATAGCGATCAT YPK_0964 1080821 - 1079820 - | periplasmic binding protein/LacI transcriptional regulator TERM 1107 1080783 - 1080811 + g 79 -2.3 -5.52384 | overlap 1080786 AAAGGAAAGTATCAG CGTTGCAGCAAGC AGA GTTTGTAGCATTG TTTTTTTCATAAAAG TERM 1108 1080786 - 1080808 + g 77 -4.8 -4.8487 | overlap 1080783 GGAAAGTATCAGCGT TGCAGCAAGC AGA GTTTGTAGCA TTGTTTTTTTCATAA YPK_0965 1082283 - 1081255 - | monosaccharide-transporting ATPase YPK_0966 1083838 - 1082330 - | ABC transporter related TERM 1109 1084302 - 1084324 + r 73 -9.1 -3.46509 | overlap 1084296 CTATCTTAATATTCA GCGGGCTTC AACAG GAAACCCGC TTGGTATTCTTAACC YPK_0967 1085483 - 1084377 - | ABC transporter related TERM 1110 1085520 - 1085533 + H 78 -2.3 -5.50313 | CAGTCAGGGGGCCAT CACAC TGCG GTGCG TTTTTTGATTTTATG YPK_0968 1085839 - 1087074 + | extracellular solute-binding protein YPK_0969 1087097 - 1087237 + | hypothetical protein TERM 1111 1088135 - 1088145 + G 77 -4.6 -4.87389 | TGATGCAGACGTGGC TGGG TTT CCCG TTTGTTTTTGCCATG YPK_0970 1087234 - 1088541 + | binding-protein-dependent transport systems inner membrane component YPK_0971 1088553 - 1089404 + | binding-protein-dependent transport systems inner membrane component YPK_0972 1089409 - 1090611 + | arabinogalactan endo-1,4-beta-galactosidase TERM 1112 1090633 - 1090613 - f 83 -11.9 -2.60571 | opp_overlap 1090608, overlap 1090612 AAGTTTTTAATTAAT CGTTGCCCA TTA TGGGCAACA CCAAGTATTTATTAT TERM 1113 1091870 - 1091883 + G 78 -5.3 -4.8622 | AAGTAAAGTAGACGC TGATG TTGC CATCA TTTTTGATTGGGAAA TERM 1114 1092263 - 1092232 - g 73 -7.4 -4.15044 | gap 1 TCTGGTCCGAAGAAA TTGACTG-TCTGGCC GAT GGCGAGAGCAATCAA GTTCAAGGGCTTGCA TERM 1115 1092541 - 1092575 + G 73 -7.8 -3.99324 | overlap 1092545 AGTTCCCTTATGGGG TTACCGCTCACCGTCG TAC CGATGGTGAGAGTGAA TTTATCGTGGTAGAA TERM 1116 1092545 - 1092571 + G 81 -13 -2.7242 | overlap 1092541 CCCTTATGGGGTTAC CGCTCACCGTCG TAC CGATGGTGAGAG TGAATTTATCGTGGT YPK_0973 1090662 - 1092722 + | Beta-galactosidase TERM 1117 1092765 - 1092744 - f 73 -10.1 -2.9186 | opp_overlap 1092744 ACTGAATGCCATACA CGCCCATTC AGCC GAGTGGGCG TTTTTTTACATCGAC TERM 1118 1092744 - 1092765 + F 100 -12.3 -5.47218 | opp_overlap 1092744 ACTGAATGCCATACA CGCCCATTC AGCC GAGTGGGCG TTTTTTTACATCGAC YPK_0974 1092834 - 1093145 + | phosphotransferase system PTS EIIB protein TERM 1119 1093323 - 1093298 - T 100 -16.3 -4.73108 | GGTATAAAACTAAAA TGCTCACTACC TAAG GGTAGTGAGCA TAGAAGAATAACCGA YPK_0975 1094761 - 1093502 - | porin LamB type YPK_0976 1095033 - 1096106 + | LacI family transcription regulator TERM 1120 1096183 - 1096208 + T 84 -9.7 -3.84017 | opp_overlap 1096185, overlap 1096185 ACCCGTACAAAAATA AACGGGCTTCC ATCA GGAAGTCCGTC TTGTATTTAACATTA TERM 1121 1096185 - 1096206 + T 100 -12.3 -3.49634 | opp_overlap 1096185, overlap 1096183 CCGTACAAAAATAAA CGGGCTTCC ATCA GGAAGTCCG TCTTGTATTTAACAT TERM 1122 1096206 - 1096185 - T 100 -10.1 -4.96501 | opp_overlap 1096185 1096183 CCGTACAAAAATAAA CGGGCTTCC ATCA GGAAGTCCG TCTTGTATTTAACAT YPK_0977 1098604 - 1096229 - | Alpha-glucosidase YPK_0978 1100042 - 1098735 - | major facilitator transporter TERM 1123 1099595 - 1099613 + g 70 -2.3 -5.00616 | overlap 1099588 1099598 CCACCCCAGCCCATC CAGCGGC AATGG GCCGTTC TTTTTTCGGGAACCA TERM 1124 1099598 - 1099610 + g 75 -6.2 -4.61482 | overlap 1099588 1099595 CCCCAGCCCATCCAG CGGC AATGG GCCG TTCTTTTTTCGGGAA TERM 1125 1100179 - 1100197 + H 82 -3.2 -5.56264 | opp_overlap 1100179 GCGATATAAAATATA CTCAAT TGATAAT ATTGAG TTTTTTATATTTCAA TERM 1126 1100492 - 1100466 - g 73 -8.8 -3.8691 | overlap 1100464 AAAATACAAGAAATA GCTAATCAAACG GGT CTTTCGATTAGC ACGGTATCAAGAGTG YPK_0979 1100436 - 1101518 + | LacI family transcription regulator TERM 1127 1101633 - 1101607 - g 83 -13.1 -3.05844 | opp_overlap 1101613, overlap 1101609 1101613 TTGGGGAGTCGAAGA GACGAACCGCA GACCA TGCGGTTCATC AACGGTACTGGCTAT YPK_0980 1101508 - 1101825 + | hypothetical protein YPK_0981 1102373 - 1101795 - | ThiJ/PfpI domain-containing protein TERM 1128 1102199 - 1102228 + g 74 -9.9 -3.57792 | opp_overlap 1102208 GGTGATCCAGACGAT CGCTTAACAGCGC ATCT GCGCTGATCGGCG TTTCAAAATAGGTGC YPK_0982 1103251 - 1102397 - | tagatose bisphosphate family class II aldolase YPK_0983 1104849 - 1103362 - | hypothetical protein YPK_0984 1106579 - 1104972 - | sulfatase TERM 1129 1105016 - 1105034 + g 91 -11 -4.36903 | GATAGCGATCTTGCC CCCAAGCC ACG GGTTTGGG TTTATCTTTGATCCA TERM 1130 1106034 - 1106050 + g 71 -6.5 -4.15565 | GACGGAGATCATGTT GTCGTGA TAA TCGCGGC TTTTGACCTCATCGG TERM 1131 1106388 - 1106402 + g 80 -4.2 -5.25803 | overlap 1106373 1106369 1106384 GCGCACGGGAACTGG GCGCTG GCT TAGTGC TTTTTTATCCAGATT YPK_0985 1107826 - 1106600 - | radical SAM domain-containing protein TERM 1132 1107513 - 1107525 + g 71 -6.3 -4.24404 | opp_overlap 1107513 1107512 CCGTTGGTTTGAAAG CTGTT TGT AACAG TTTTACCGTTTGCAT TERM 1133 1107997 - 1107978 - R 100 -12.2 -5.24531 | ATCGCCTATAAAAAA CGCACATC AGGT GATGTGCG CCAGTGCAACAAAAT YPK_0986 1109128 - 1108070 - | glycosy hydrolase family protein TERM 1134 1108319 - 1108304 - G 71 -6.8 -4.2558 | opp_overlap 1108308 CAGCCCGTAGCAAAA CAGCGC TGTT GCACTG CTCTCTGGGGCAGGA YPK_0987 1109899 - 1109144 - | 2-deoxy-D-gluconate 3-dehydrogenase YPK_0988 1111261 - 1110095 - | N-acetylglucosamine-6-phosphate deacetylase TERM 1135 1110883 - 1110873 - G 74 -6.8 -4.36914 | GGCCCCTCCAGAAAA CTGC CGA GCAG GGTTGCGGTGCGGGT YPK_0989 1111704 - 1111264 - | PTS system fructose subfamily IIA component YPK_0990 1112680 - 1111790 - | PTS system mannose/fructose/sorbose family IID component TERM 1136 1112435 - 1112454 + g 77 -6.4 -4.63218 | opp_overlap 1112434, overlap 1112437 CGATTTCGCCAAATC TGCACGGT TGTT ACCGTGGA TTTTCTTCAACGCGG YPK_0991 1113458 - 1112670 - | phosphotransferase system PTS sorbose-specific IIC subunit YPK_0992 1114002 - 1113505 - | PTS system mannose/fructose/sorbose family IIB subunit YPK_0993 1115186 - 1114020 - | AgaS family sugar isomerase TERM 1137 1115027 - 1115009 - G 72 -5.8 -4.41633 | overlap 1115006 1115010 CACCGGTAAAAATAA TCCGCGTG TTA CTCGCGGC TAATGCCTGATGCAG YPK_0994 1116481 - 1115183 - | D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit TERM 1138 1116171 - 1116197 + g 82 -10.2 -3.79747 | overlap 1116172 GCATGCGCCATGGCT TCGTTGGCAG GCAAGTG CTGCCAACGG TTTGGTCCTAAATGG TERM 1139 1116172 - 1116196 + g 76 -11.5 -2.87527 | overlap 1116171 CATGCGCCATGGCTT CGTTGGCAG GCAAGTG CTGCCAACG GTTTGGTCCTAAATG YPK_0995 1117307 - 1116531 - | DeoR family transcriptional regulator YPK_0996 1118147 - 1119700 + | sulfatase TERM 1140 1119722 - 1119751 + T 100 -14.5 -3.44206 | gap 1 ATCGACGGCTGACTT CCTCTTCCTGA-CA ATC TGCTCAGGAAGAGG TTATCGTGGATCTTG TERM 1141 1119926 - 1119911 - T 100 -11.8 -4.43681 | opp_overlap 1119907 GACGTAATAGTAAAA GGGCGC CTAA GCGCCC TGAGTCATGTTTTAA YPK_0997 1123051 - 1119977 - | lyase catalytic TERM 1142 1120855 - 1120835 - G 76 -9.1 -3.87149 | opp_overlap 1120834 1120835 CGCATCAAATTTAAA GGCAAACAT GCC ATATTTGCC ACTTAGTGATGAGTG YPK_0998 1125346 - 1123160 - | outer membrane autotransporter YPK_0999 1126411 - 1125461 - | hypothetical protein YPK_1000 1127202 - 1127014 - | hypothetical protein YPK_1001 1127698 - 1128453 + | carbonic anhydrase YPK_1002 1129196 - 1129612 + | putative transcriptional regulator, CadC TERM 1143 1129715 - 1129705 - g 85 -5.4 -5.30189 | overlap 1129697 GATAAGACTAAAAAA TCCT TTT AGGA CACTCAACTGTAATC YPK_1003 1129682 - 1130185 + | general secretion pathway protein C TERM 1144 1130293 - 1130308 + G 90 -2.6 -5.8187 | gap 1, opp_overlap 1130293, overlap 1130295 GGCAAAGGAATTAAA TCTATCC ATG GGAT-GA TTTTTTTATTCACTC YPK_1004 1130266 - 1132188 + | general secretion pathway protein D TERM 1145 1132624 - 1132614 - g 80 -4 -5.24129 | opp_overlap 1132614 TCTTTCGATAAAAAA CTTA CTG TAAG ATTTCGTATTGATGG YPK_1005 1132185 - 1133696 + | type II secretion system protein E YPK_1006 1133683 - 1134885 + | type II secretion system protein TERM 1146 1135108 - 1135125 + G 76 -9.9 -3.76224 | GGATTATCCGACCGA GCAGCAA GGCA TTGCTGC TTTAGTAACTAAACC YPK_1007 1134905 - 1135342 + | general secretion pathway protein G TERM 1147 1135779 - 1135809 + G 71 -7 -4.09685 | gap 1, overlap 1135775 CAATTGGTTTTCTCT CCAGAGGAGGAGT ATTCGG ACTTCTCCT-TGG TTTTAAGAAATGAAG YPK_1008 1135347 - 1135889 + | general secretion pathway protein H YPK_1009 1135981 - 1136271 + | type II secretion system protein I/J YPK_1010 1136264 - 1136860 + | general secretion pathway protein J YPK_1011 1136869 - 1137825 + | general secretion pathway protein K YPK_1012 1137809 - 1138999 + | general secretion pathway protein L YPK_1013 1138996 - 1139457 + | hypothetical protein YPK_1014 1139483 - 1140325 + | prepilin peptidase YPK_1015 1140674 - 1140309 - | putative lipoprotein TERM 1148 1141514 - 1141498 - gH 71 -6.7 -4.15703 | opp_overlap 1141498 1141496 TTGGATAAAGAACAA GATAAAA CGT TTTTATC TGTTTATCAGCAGCA YPK_1016 1140958 - 1141710 + | transcriptional regulator, CadC YPK_1017 1141673 - 1142074 + | hypothetical protein TERM 1149 1143888 - 1143858 - g 100 -9.1 -5.42259 | overlap 1143860 TTACCTGTAAAAAAA TACTCTCCTCTAC GATTA GCAAAGGAGAGCA CGATTGCTGCTATTG TERM 1150 1143886 - 1143860 - g 85 -9.5 -4.35085 | overlap 1143858 ACCTGTAAAAAAATA CTCTCCTCTAC GATTA GCAAAGGAGAG CACGATTGCTGCTAT YPK_1018 1142229 - 1143920 + | methyl-accepting chemotaxis sensory transducer YPK_1019 1144541 - 1143906 - | hypothetical protein YPK_1020 1145541 - 1144654 - | beta-lactamase domain-containing protein YPK_1021 1145648 - 1146556 + | LysR family transcriptional regulator YPK_1022 1146925 - 1148085 + | major facilitator transporter YPK_1023 1149023 - 1148082 - | LysR family transcriptional regulator TERM 1151 1149494 - 1149480 - g 75 -11.4 -2.64155 | opp_overlap 1149477, overlap 1149477 1149476 TTTGGGTGAAATCGA GCGTGC CTT GCACGC GGGTTATCAACCGGG YPK_1024 1149238 - 1150500 + | diaminopimelate decarboxylase YPK_1025 1151519 - 1150497 - | LacI family transcription regulator YPK_1026 1151969 - 1154230 + | molybdopterin oxidoreductase TERM 1152 1154547 - 1154564 + F 100 -11.3 -6.11644 | TTTTATTTGCACCGA CCTACGC AGAT GCGTAGG TTTTTTTTTAGGTAC YPK_1027 1154679 - 1156835 + | AMP-dependent synthetase and ligase TERM 1153 1157634 - 1157655 + G 90 -10.1 -4.38712 | gap 1, overlap 1157635 CGATTGGGATTGTGG TGGGCG-CGG GTG CCGCCGCCCG TTTTGTGACGCTAAA TERM 1154 1157635 - 1157654 + G 79 -11.4 -3.22906 | gap 1, overlap 1157634 GATTGGGATTGTGGT GGGCG-CGG GTG CCGCCGCCC GTTTTGTGACGCTAA YPK_1028 1156832 - 1158052 + | major facilitator transporter TERM 1155 1158109 - 1158058 - T 83 -11.8 -2.69964 | gap 1, opp_overlap 1158079, overlap 1158076 GCCTGAATGATATGA TTTGTCTGTCATCTGAAAGGATCTC AAG GAGATCC-TTCAGACTGCTGACAAA TATCGCCTTTTGAAA TERM 1156 1158092 - 1158076 - T 84 -10.9 -3.59979 | opp_overlap 1158079, overlap 1158058 GTCTGTCATCTGAAA GGATCTC AAG GAGATCC TTCAGACTGCTGACA YPK_1029 1158314 - 1158081 - | hypothetical protein YPK_1030 1158393 - 1158644 + | hypothetical protein TERM 1157 1158803 - 1158774 - T 100 -16.5 -3.02511 | GGCACTTTGTCAATA CCCTGAAGGCCGC ATCA GCGGCCTTCAGAA TGCTGACAAACCCCG TERM 1158 1158886 - 1158860 - T 70 -7.2 -3.74872 | gap 1, opp_overlap 1158869, overlap 1158861 AGGCAGGGGAGTAAA GCGTCCGCGCC AGGGAG GGCGCGG-CTC GAGCCTACATGGATG TERM 1159 1158966 - 1158981 + T 91 -11.8 -3.43203 | opp_overlap 1158961 1158960 TGTCAATAACCTCAA GGCCGC ATCA GCGGCC TTCATATTATGATAG YPK_1031 1160061 - 1159021 - | aldo/keto reductase TERM 1160 1159173 - 1159162 - G 73 -7.2 -4.16842 | overlap 1159163 CGTACTGGCAACAAA CGGC TGTT GCCG CACAAAGGCCAGAGC TERM 1161 1159824 - 1159836 + g 73 -10.5 -3.1733 | overlap 1159822 1159821 CTAAAATAATTTTTT CGCGG CAA CCGCG TGCTTTTATCCAGCG TERM 1162 1160326 - 1160346 + r 77 -8.3 -3.96298 | AGATATAAAGCACCT GCGGGAT AGAGAAC ATCCCGC TTTAATTAATCACTA YPK_1032 1161118 - 1160432 - | DNA mismatch repair endonuclease mutH TERM 1163 1160827 - 1160854 + g 73 -5.6 -4.49389 | gap 1 TCCCGGTGAGTGGTG CCAC-GCAGACGA ATG TCGTTTCCAGTGG TTTTCCTTGTGCACT TERM 1164 1161373 - 1161387 + H 73 -3.5 -5.08011 | CTGGTTCAATTTACA GCCTT GACGA GAGGC TTTTTTGCGAGTTTT TERM 1165 1161396 - 1161406 + H 81 -5.4 -5.10497 | GAGAGGCTTTTTTGC GAGT TTT ACTC TTTTTTGCGTAACTT YPK_1033 1161815 - 1162342 + | NUDIX hydrolase TERM 1166 1162515 - 1162545 + G 80 -12.5 -2.75074 | opp_overlap 1162534 1162535, overlap 1162513 1162539 1162543 GTTACTACCTAATGG CGACCAGGGGGCT GAAAA AGCCCCGTGGGCG TACTATTACGCTGGC TERM 1167 1162544 - 1162534 - g 83 -8.2 -4.57073 | opp_overlap 1162515 1162513 1162539 1162543, overlap 1162535 CAGGGGGCTGAAAAA GCCC CGT GGGC GTACTATTACGCTGG YPK_1034 1162355 - 1164601 + | phosphoenolpyruvate-protein phosphotransferase PtsP YPK_1035 1164852 - 1165724 + | prolipoprotein diacylglyceryl transferase TERM 1168 1166153 - 1166174 + G 83 -7.3 -4.6902 | gap 1, opp_overlap 1166152 1166153, overlap 1166158 CGAACTGGATCAAAT GGCGTTGGCA CCA TGCCA-TGCC TTTTTCCAGTTCTAC YPK_1036 1165731 - 1166525 + | thymidylate synthase TERM 1169 1166535 - 1166553 + F 86 -8.8 -4.36485 | ATTTAATCTTCATAT CGGAGCTG TAA TGGCTCCG TTTTGCGTCTTTTAT TERM 1170 1166665 - 1166650 - f 74 -4.7 -4.82901 | GTCTTCCGATAAAAA TGCGA GTCGTA TCGCA GACCTCCCTGTATTT TERM 1171 1166847 - 1166835 - g 80 -4.9 -5.04601 | CTTAGAAAGCAAAAA GTTTT TAT AAAAC AAAGATCACTAATAA YPK_1037 1166769 - 1167338 + | hypothetical protein YPK_1038 1167329 - 1167937 + | putative prepilin peptidase dependent protein YPK_1039 1167934 - 1168404 + | hypothetical protein YPK_1040 1168392 - 1168802 + | prepilin peptidase dependent protein-like protein YPK_1041 1168937 - 1172308 + | exodeoxyribonuclease V, gamma subunit TERM 1172 1173495 - 1173509 + G 83 -6.4 -4.88407 | TGGCACAACGTGATG TTGTCG TCG CGGCAA TTTTTGATTACATCA TERM 1173 1173573 - 1173555 - g 100 -6 -5.52986 | AGGGGATTAAAAAAA GCTATTTC GAT GAAATTGC ACATGTATTGAATCT TERM 1174 1174714 - 1174726 + G 74 -9.1 -3.61715 | AGAAATTGCTGGTAT GGCAC GTA GTGCC TTGTTAGGGCAGATC YPK_1042 1172390 - 1175278 + | peptidase M16 domain-containing protein YPK_1043 1175275 - 1178937 + | exodeoxyribonuclease V, beta subunit TERM 1175 1180793 - 1180809 + G 71 -6.5 -4.1552 | overlap 1180794 CGCCATTACCCGCGC CCGTCAG CAT CTGACGC TTTATTGCAGCGATG YPK_1044 1178934 - 1180907 + | exodeoxyribonuclease V, alpha subunit TERM 1176 1180931 - 1180908 - T 75 -8.8 -3.66772 | opp_overlap 1180909, overlap 1180909 TTAAATCGCCAATAA TCTCAGGGCA TAAG CGCCCTGAGT TATCTGTTTCAAATA TERM 1177 1180909 - 1180930 + T 95 -11.6 -3.76634 | opp_overlap 1180908 1180909 TAAATCGCCAATAAT CTCAGGGC ATAAGC GCCCTGAG TTATCTGTTTCAAAT TERM 1178 1180930 - 1180909 - T 89 -12.3 -2.79581 | opp_overlap 1180909, overlap 1180908 TAAATCGCCAATAAT CTCAGGGCA TAAG CGCCCTGAG TTATCTGTTTCAAAT YPK_1045 1182387 - 1181062 - | amino-acid N-acetyltransferase YPK_1046 1182623 - 1183873 + | N-acetylmuramoyl-L-alanine amidase TERM 1179 1184072 - 1184059 - f 100 -8.1 -6.02919 | opp_overlap 1184059 CCAGAAACAAAAAAA CACCC GATA GGGTG TCTAATGATGATATC TERM 1180 1185884 - 1185861 - g 73 -8.8 -3.86897 | gap 1 TTCACTGCTTATAAA GGT-GGCACGC AGA GCGAGCCTACC AGTAATGATTCGTCA YPK_1047 1184754 - 1185926 + | MltA domain-containing protein TERM 1181 1185980 - 1185965 - f 86 -11.8 -3.14211 | opp_overlap 1185965 ATTTGTTTTGATTAA GCGGCC AGTT GGCCGC TTTTGCATGAGTACT TERM 1182 1185965 - 1185980 + F 100 -11.8 -4.20084 | opp_overlap 1185965 ATTTGTTTTGATTAA GCGGCC AGTT GGCCGC TTTTGCATGAGTACT TERM 1183 1186804 - 1186815 + G 72 -5.8 -4.31895 | GCAACGATGGTTACT GCCA CGTT TGGC TTTGTTGCTGTGTCT YPK_1048 1186069 - 1186896 + | UBA/THIF-type NAD/FAD binding protein YPK_1049 1187372 - 1186932 - | cysteine desulfurase, sulfur acceptor subunit CsdE YPK_1050 1188713 - 1187508 - | cysteine desulfurase, catalytic subunit CsdA YPK_1051 1188790 - 1188924 + | hypothetical protein TERM 1184 1189083 - 1189063 - f 100 -9.7 -6.00086 | ATAGGATAAAAAAAA GCACCGCCA AAA TAACGGTGC TGCATAAAATCACTA TERM 1185 1189154 - 1189136 - f 84 -3.8 -5.54192 | opp_overlap 1189139, overlap 1189137 1189139 AGGAAGTGAAAAAAA GCAGTAGC TTA GCTACTAT GTCTGGCATACCAGA TERM 1186 1189153 - 1189137 - f 72 -7.3 -3.90888 | opp_overlap 1189139, overlap 1189136 1189139 GGAAGTGAAAAAAAG CAGTAGC TTA GCTACTA TGTCTGGCATACCAG YPK_1052 1189388 - 1190305 + | LysR family transcriptional regulator TERM 1187 1190499 - 1190511 + G 100 -9.1 -5.47431 | TAATGCTGATATTTT CCGCT CTG AGCGG TTTTTTCTATGTTGC TERM 1188 1190768 - 1190810 + G 72 -6.2 -4.46404 | opp_overlap 1190772 1190775, overlap 1190772 CTGAGACTGTGGATA TATATCACGCCAGTAGGCGG AGT CTGTTTTCTGGCGGGATGGA TTTTGATGTTGATTG YPK_1053 1190471 - 1190866 + | hypothetical protein YPK_1054 1190859 - 1191965 + | hypothetical protein TERM 1189 1192011 - 1191996 - T 86 -11.8 -3.16154 | opp_overlap 1191992 1191991 TAACATCATATTTAA GGGGCC TGTT GGCCCC TGAGGTTATTGACAA TERM 1190 1192092 - 1192118 + T 72 -10.1 -2.88849 | gap 1, overlap 1192087 1192093 TCCATGTAGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1191 1192093 - 1192119 + T 84 -10.1 -3.82218 | gap 1, overlap 1192087 1192092 CCATGTAGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1192 1192178 - 1192201 + T 100 -14.6 -4.90455 | GGGTTTGTCAGCAGT CTGAGGGGCC TATT GGCCCCTTAG TTTTTATGCGTATAT YPK_1055 1192971 - 1192216 - | 5'-3' exonuclease TERM 1193 1193142 - 1193155 + r 75 -3.1 -5.1861 | ATTTAAATTTACTCT TGGCA GATT TGTCA TTTTTTGCTGCTCAA YPK_1056 1194595 - 1193231 - | hypothetical protein TERM 1194 1193582 - 1193559 - G 75 -10.3 -3.42354 | opp_overlap 1193557 1193559 1193562 CAGTTGAAGCTATAA GCATCGCCG GTATTA CGGCGATAC TCTTTCACCAGTGGC TERM 1195 1194212 - 1194200 - G 74 -4.1 -4.90471 | ACGTAAAATAGAAAA GACCA GGT TAGTC AAATGACTGGAGCTC YPK_1057 1195593 - 1194748 - | 7-cyano-7-deazaguanine reductase YPK_1058 1195725 - 1196276 + | Syd family protein TERM 1196 1196816 - 1196793 - f 88 -12.5 -2.67189 | opp_overlap 1196793, overlap 1196790 1196785 TATAAAACGAATTGA GGGGTACTG GTAAAA CAGTACCCC TTTTTTTGTTTTTTT TERM 1197 1196793 - 1196816 + F 100 -12.5 -6.32976 | opp_overlap 1196793 1196790 1196785 TATAAAACGAATTGA GGGGTACTG GTAAAA CAGTACCCC TTTTTTTGTTTTTTT YPK_1059 1196984 - 1197316 + | hypothetical protein YPK_1060 1197316 - 1198089 + | pseudouridine synthase YPK_1061 1198117 - 1198566 + | flavodoxin/nitric oxide synthase TERM 1198 1198587 - 1198622 + T 86 -12.1 -3.17194 | overlap 1198589 ATATCTTGATTTTAT TGCGTATTGTGGCAA GTTTCG TTGTCACAATACGTA TTCGGTTACCGAGGT TERM 1199 1198589 - 1198620 + T 93 -12.5 -3.14878 | overlap 1198587 ATCTTGATTTTATTG CGTATTGTGGCAA GTTTCG TTGTCACAATACG TATTCGGTTACCGAG YPK_1062 1199045 - 1198656 - | hypothetical protein TERM 1200 1198722 - 1198747 + g 79 -2.5 -5.46706 | ATTGGTGACAACACT TTCCAGGTGAC GTAG GTCATCCAGAA TTTTTCTTTTCAAAT TERM 1201 1199159 - 1199139 - R 100 -8.3 -5.53288 | opp_overlap 1199139 1199138 1199136 1199141 CGTAAGGCAAAAAAA TAGCGGG TGGTTAG CCCGCTA CTCTTAATCTTAGTC YPK_1063 1199993 - 1199169 - | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YPK_1064 1202906 - 1200168 - | UTP-GlnB uridylyltransferase, GlnD TERM 1202 1200964 - 1200974 + g 71 -4.6 -4.65895 | CTATTTTGCATTCCG CGGC GTA GCTG TTTTTCGGTCGCAAA TERM 1203 1201787 - 1201805 + g 70 -2.3 -4.87291 | CCCGTAGTTGAAACT CTTCGTC AAGTG GACGCGG TTTTTCATTCGCATC TERM 1204 1202899 - 1202885 - G 100 -12.8 -5.26316 | opp_overlap 1202879 1202885 GCAGCCCATAAAAAA GCCGGC GGT GCCGGC TTGTCATTATTACTC TERM 1205 1202885 - 1202899 + g 90 -12.8 -3.6216 | opp_overlap 1202885, overlap 1202879 GCAGCCCATAAAAAA GCCGGC GGT GCCGGC TTGTCATTATTACTC YPK_1065 1203700 - 1202909 - | methionine aminopeptidase, type I YPK_1066 1204135 - 1204860 + | ribosomal protein S2 TERM 1206 1204853 - 1204841 - f 76 -7.7 -4.16842 | TTCAGGCGGAAGAAA GCTTC GTA GAAGC TGAATAATAAGTCCG TERM 1207 1204916 - 1204934 + F 100 -16 -3.74792 | AAATATGTTGGTTAG GGGGGCCT TAT AGGCCCCC TTTGCATATCTAATG YPK_1067 1204988 - 1205845 + | translation elongation factor Ts TERM 1208 1205855 - 1205878 + F 100 -12.4 -4.68384 | opp_overlap 1205855 TCTTAATGCTCCAAA TGGGGCCGCC AATA GGCGGTTCCA TTTTATTCACTCGAT TERM 1209 1205878 - 1205855 - f 70 -8 -3.57561 | opp_overlap 1205855 TCTTAATGCTCCAAA TGGGGCCGCC AATA GGCGGTTCCA TTTTATTCACTCGAT TERM 1210 1206437 - 1206450 + G 75 -5.3 -4.72986 | TAGCTTGCTGCGTCA TAACC GTGT GGTTA TTTTTGCTGCGGGTA TERM 1211 1206738 - 1206720 - g 72 -5.8 -4.33153 | opp_overlap 1206722, overlap 1206722 TTCAACATGAATAAA CCCGGCGC TTT GCGTCGTG TGGTGATGGGTGAGA YPK_1068 1206054 - 1206779 + | uridylate kinase YPK_1069 1206915 - 1207472 + | ribosome recycling factor TERM 1212 1207487 - 1207516 + F 100 -11.5 -5.44721 | gap 1, opp_overlap 1207493, overlap 1207493 ATCTCTACTCGCATT GTATAAGCGTCGCC TTA GGCGGCGCTT-TGC TTTTTTTCCGGTCAT TERM 1213 1207511 - 1207493 - f 86 -11.6 -3.32963 | opp_overlap 1207493 1207487 ACTCGCATTGTATAA GCGTCGCC TTA GGCGGCGC TTTGCTTTTTTTCCG TERM 1214 1207493 - 1207511 + F 100 -13.8 -4.5187 | opp_overlap 1207493, overlap 1207487 ACTCGCATTGTATAA GCGTCGCC TTA GGCGGCGC TTTGCTTTTTTTCCG YPK_1070 1207686 - 1208882 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 1215 1209017 - 1209036 + F 100 -8.6 -5.63504 | gap 1, opp_overlap 1209017, overlap 1209005 GCTGTCACTCCAGAA GCCGTG-AC TTG GTACACGGC TTTTTTTGTGCACTT TERM 1216 1209349 - 1209361 + G 82 -5.5 -5.06414 | GACCAAGAAGTGACC GCTCT GAT GGAGC TTTTTGTTCGAGCAC YPK_1071 1209106 - 1209864 + | undecaprenyl diphosphate synthase YPK_1072 1209874 - 1210722 + | phosphatidate cytidylyltransferase YPK_1073 1210751 - 1212106 + | membrane-associated zinc metalloprotease TERM 1217 1213153 - 1213143 - g 73 -5.4 -4.49311 | overlap 1213151 ATGATGACGATAAAA CAGT TAA ACTG CATATCAACGTGGAT YPK_1074 1212143 - 1214530 + | outer membrane protein assembly complex, YaeT protein TERM 1218 1215067 - 1215049 - g 73 -4.6 -4.6759 | opp_overlap 1215044 1215049 AAGAGCGTAACAAAA TCCTGA GCCGTAT TCAGGA TGCTGTTAAATCTGT YPK_1075 1214688 - 1215185 + | outer membrane chaperone Skp (OmpH) TERM 1219 1215238 - 1215270 + G 75 -11.4 -2.63823 | gap 1, overlap 1215235 1215234 1215268 AGTTGGATGCACAGG TGCACGGTGATGGCG ATCT TGTCATCACCG-GCA TCGCTTCTATGCATT YPK_1076 1215189 - 1216211 + | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase TERM 1220 1216334 - 1216346 + F 70 -2.7 -5.00616 | overlap 1216335 GTGCAGGCCGTGTTG TTGAT AGC ATCAG TTTTTTAGACAGGAA YPK_1077 1216369 - 1216899 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YPK_1078 1216903 - 1217691 + | acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase YPK_1079 1217695 - 1218879 + | lipid-A-disaccharide synthase TERM 1221 1219051 - 1219023 - g 79 -2.3 -5.50499 | overlap 1219024 1219025 1219027 GCAGATTCAAAAAAA CTCAGCGAGAAGC GCC GCCTGTCACTGTA TGACGAAATCACTGA YPK_1080 1218876 - 1219472 + | ribonuclease H TERM 1222 1220536 - 1220520 - g 75 -5.1 -4.82901 | overlap 1220521 TTTCTGGTAGAAAAA GCCAAAC AAG GTTTGGA AGAACGTTTGGAATT TERM 1223 1220983 - 1220996 + G 71 -6.7 -4.25056 | overlap 1220980 TCGGCCGTGTATTAG GCCAT CCCT ATGGC TTTGTTGATCGGATC TERM 1224 1221805 - 1221782 - g 82 -5.2 -5.07486 | opp_overlap 1221782, overlap 1221784 CATGGGTAAGAAAAA CCCTGCTGAG ATGG CTAAGCAGCG TTCTGTATTTGAAGA TERM 1225 1222263 - 1222253 - g 75 -5.4 -4.8048 | opp_overlap 1222253 TGTCGATACCAAAAA GCTT AAC AAGC GTATTTTAGAAAAAC YPK_1081 1219602 - 1223117 + | DNA polymerase III, alpha subunit TERM 1226 1223213 - 1223185 - g 71 -6.8 -4.27584 | gap 1 AGCTGGAAGCGAAAA TTGACTCGCTGAC TGCA GTCAGCC-GTCAA GACGAAAAATTAGAT TERM 1227 1223900 - 1223877 - g 78 -11 -3.31792 | CCATTAGCCGCAGAA GCGATGGGCA TTAC TGCACATCGC CTAAAAGAGCTGAAG YPK_1082 1223130 - 1224089 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 1228 1224112 - 1224134 + F 100 -5.5 -6.08563 | opp_overlap 1224111 1224106 1224112 GCCAACTGATAAAAG CCGGTGC GGAATTTAA GCGCCGG TTTTTTTTATCTATT YPK_1083 1224273 - 1224671 + | glyoxalase/bleomycin resistance protein/dioxygenase YPK_1084 1224673 - 1226055 + | tRNA(Ile)-lysidine synthetase YPK_1085 1226311 - 1226628 + | cytochrome c class I TERM 1229 1226878 - 1226843 - T 100 -17 -4.1043 | opp_overlap 1226850, overlap 1226850 TGTAAATAGGATAAA TGCAAAACGGGCCGCT CTTC AGCGACCCGTTTTTCA CAAGGAAGTGGAAAC TERM 1230 1226850 - 1226871 + T 100 -11.5 -4.56597 | opp_overlap 1226850 1226843 AGGATAAATGCAAAA CGGGCCGCT CTTC AGCGACCCG TTTTTCACAAGGAAG TERM 1231 1226871 - 1226850 - T 100 -13.7 -4.40173 | opp_overlap 1226850, overlap 1226843 AGGATAAATGCAAAA CGGGCCGCT CTTC AGCGACCCG TTTTTCACAAGGAAG YPK_1086 1227153 - 1226893 - | transcriptional antiterminator, Rof YPK_1087 1227340 - 1227140 - | hypothetical protein TERM 1232 1227176 - 1227191 + g 78 -11.8 -3.08679 | opp_overlap 1227174 CACCAATAAGTTAGC GGCGGC ATAG GCCGCC TGTTCCCTAACGGAG TERM 1233 1228121 - 1228096 - g 74 -9.1 -3.6445 | overlap 1228097 1228099 AGAATAATCTGGAAA TTAGTTTTGCC GAAT GGCAAAACTAC GGGCAATAAGTGTGT TERM 1234 1228120 - 1228097 - g 81 -12.6 -2.77947 | overlap 1228096 1228099 GAATAATCTGGAAAT TAGTTTTGCC GAAT GGCAAAACTA CGGGCAATAAGTGTG TERM 1235 1228118 - 1228099 - g 74 -10.8 -2.92935 | overlap 1228097 1228096 ATAATCTGGAAATTA GTTTTGCC GAAT GGCAAAAC TACGGGCAATAAGTG YPK_1088 1227582 - 1228130 + | YaeQ family protein YPK_1089 1228109 - 1228549 + | class I peptide chain release factor YPK_1090 1228634 - 1229317 + | copper resistance lipoprotein NlpE YPK_1091 1231169 - 1229451 - | prolyl-tRNA synthetase TERM 1236 1229515 - 1229526 + g 85 -5.8 -5.09762 | ATCATTTGTTTCTCA CCGA CGCG TCGG TTTTTGTATTCCACT YPK_1092 1231980 - 1231273 - | hypothetical protein TERM 1237 1231904 - 1231924 + g 74 -3.9 -4.99645 | overlap 1231906 TCCTCAACCAAACCG GGTTGCCGT GGT ACCGCAAAC TTTTCTTTATACGGT YPK_1093 1232384 - 1231977 - | putative lipoprotein TERM 1238 1232469 - 1232446 - R 100 -16.8 -3.97674 | opp_overlap 1232449, overlap 1232449 CTATTATTCAAATAA CAAGACGGGC TATA GCCCGTCTTG TCGATATATTCAATA TERM 1239 1232466 - 1232449 - R 100 -12.7 -4.10744 | opp_overlap 1232449, overlap 1232446 TTATTCAAATAACAA GACGGGC TATA GCCCGTC TTGTCGATATATTCA TERM 1240 1232449 - 1232466 + r 100 -12.7 -3.42583 | opp_overlap 1232449 1232446 TTATTCAAATAACAA GACGGGC TATA GCCCGTC TTGTCGATATATTCA YPK_1094 1233317 - 1232502 - | YaeC family lipoprotein YPK_1095 1234034 - 1233381 - | binding-protein-dependent transport systems inner membrane component TERM 1241 1233616 - 1233627 + g 71 -4.4 -4.79223 | CCGGGCAGGGCTTCT GGTA ATAA TACC TTTTTGATGATCTGC YPK_1096 1235058 - 1234027 - | D-methionine ABC transporter, ATPase subunit YPK_1097 1235245 - 1235811 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 1242 1238097 - 1238060 - f 78 -5.7 -4.7629 | opp_overlap 1238054 1238060 1238063, overlap 1238063 TTATGAACTGAAAAA TAACGTAAAGATGACTT TACC AAGTCGTGTTTACGATA TTGCTCTTTAACAAT TERM 1243 1238094 - 1238063 - f 78 -7.4 -4.47888 | opp_overlap 1238060 1238054 1238063, overlap 1238060 TGAACTGAAAAATAA CGTAAAGATGACTT TACC AAGTCGTGTTTACG ATATTGCTCTTTAAC TERM 1244 1239553 - 1239535 - f 82 -10.3 -3.57798 | overlap 1239548 CATAAGTAACGATAA TGCGGGT GAAAA ACCCGCA CGCCGGAAGACCAAG TERM 1245 1240013 - 1239987 - f 70 -9.4 -2.75844 | opp_overlap 1240001 1240009, overlap 1239986 1239989 GGCGTTAGGTGAAAG GACTAGCTCCTG GAG CTGAAGCCAGTC GCAGATACCAGCTGG TERM 1246 1240060 - 1240049 - f 74 -4.4 -5.06816 | ACTGTTTAATAAAAA CACA GCAC TGTG CAAACACGAAAGTGG TERM 1247 1241172 - 1241182 + F 74 -6.8 -4.27316 | opp_overlap 1241172 GGCTTAACCTTACAA CACC GAA GGTG TTTTGAATTGAGAGA TERM 1248 1241612 - 1241632 + F 100 -14.1 -5.24449 | opp_overlap 1241612 CCACTTATTGCAAAA CCCTGAATC TTA GATTCAGGG TTTTTTGCATTTATA TERM 1249 1241632 - 1241612 - f 100 -14.1 -4.14739 | opp_overlap 1241612 CCACTTATTGCAAAA CCCTGAATC TTA GATTCAGGG TTTTTTGCATTTATA YPK_1101 1241958 - 1242761 + | aldo/keto reductase TERM 1250 1242786 - 1242804 + F 100 -9.6 -5.83211 | AAGACACTGGACGAG CCACCTTA CAT TGAGGTGG TTTTTTATTTTGGTG YPK_1102 1242814 - 1243260 + | hypothetical protein YPK_1103 1243299 - 1243406 + | hypothetical protein TERM 1251 1243900 - 1243916 + G 70 -2.2 -4.8622 | GCCAGCTATCAGGCC GCAGAT CAGGT ACCTGC TTTTTCATTGCCCCA TERM 1252 1244293 - 1244307 + G 75 -3.4 -5.13354 | overlap 1244295 CGCAGTCGTGCGTTC GGCCGG CCT CTGGAC TTTATTTTTTATCGC YPK_1104 1243642 - 1244403 + | endonuclease/exonuclease/phosphatase TERM 1253 1244424 - 1244409 - T 100 -9 -5.71983 | opp_overlap 1244409 CCAACCATAAAAAAA GCACCT CGAA AGGTGC TTTTTGACAGTGATT TERM 1254 1244409 - 1244424 + T 100 -9 -4.60889 | opp_overlap 1244409 CCAACCATAAAAAAA GCACCT CGAA AGGTGC TTTTTGACAGTGATT YPK_1105 1245864 - 1244446 - | lytic transglycosylase catalytic TERM 1255 1245075 - 1245107 + g 80 -7 -4.58395 | TTATACCGTACTTTT TGCTGTTCTTGAGT AAATC ACCCAAGGCCAGCA TTTTTGGAACATAAA YPK_1106 1246652 - 1245897 - | hydroxyacylglutathione hydrolase TERM 1256 1246368 - 1246403 + g 75 -3.2 -5.07107 | overlap 1246364 1246370 TTGTCCGGCAATGGT GAGGCTATCGCCAT CATTAACA ATGACGGTGGCCCC TTTTTTCGCAGTTTC TERM 1257 1247274 - 1247248 - g 93 -8.7 -5.06414 | overlap 1247249 GCCCTTCAATAAAAA CGGTGGGCACT TTATC AGTACCCACCT GCCTGCGTTGGGATG TERM 1258 1247273 - 1247249 - g 88 -12.2 -3.63367 | overlap 1247248 CCCTTCAATAAAAAC GGTGGGCACT TTATC AGTACCCACC TGCCTGCGTTGGGAT YPK_1107 1246697 - 1247416 + | methyltransferase type 11 YPK_1108 1247935 - 1247471 - | ribonuclease H TERM 1259 1247654 - 1247674 + g 73 -2.4 -5.11033 | overlap 1247655 1247656 GCGCACTGGCTTGCG ATCGGCTG TTTTC CAGCCGCG TTTTTTCCAGTTATG YPK_1109 1248005 - 1248769 + | DNA polymerase III, epsilon subunit TERM 1260 1248995 - 1248969 - T 100 -15.3 -3.52113 | opp_overlap 1248969 CGCCAAAATTTAGAA GCCCTGAGTTA AGTAA TAACTCAGGGC TTTGTCGTTTCTGCT TERM 1261 1248969 - 1248995 + T 100 -15.3 -4.18303 | opp_overlap 1248969 CGCCAAAATTTAGAA GCCCTGAGTTA AGTAA TAACTCAGGGC TTTGTCGTTTCTGCT YPK_1110 1250499 - 1249015 - | permease for cytosine/purines uracil thiamine allantoin YPK_1111 1250820 - 1251770 + | urate catabolism protein TERM 1262 1251800 - 1251781 - Tf 91 -7.2 -5.28176 | overlap 1251788 1251794 1251797 GGTAGGGATAAAAAA CAGATACC CGAA AGTATCTG TCAGACTGCTGACAA TERM 1263 1251889 - 1251863 - Tf 84 -10.1 -3.82218 | gap 1, opp_overlap 1251872, overlap 1251864 1251879 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1264 1251890 - 1251864 - Tf 72 -10.1 -2.88849 | gap 1, opp_overlap 1251872, overlap 1251863 1251879 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1265 1251968 - 1251987 + GT 80 -6.5 -4.7033 | TTGTCAATAACCTCA CAGATAC CCGAAA GTATCTG TTTTCTCTTAACTTA YPK_1113 1253004 - 1252000 - | substrate-binding region of ABC-type glycine betaine transport system YPK_1112 1251902 - 1252066 + | hypothetical protein TERM 1266 1252202 - 1252215 + gT 79 -2.3 -5.4505 | overlap 1252189 TTGGCGGCTGCCGGA TTGGC TTCA GCCCA TTTTTTGTTCGCCAC TERM 1267 1252537 - 1252551 + gT 70 -7.8 -3.6501 | overlap 1252545 1252548 CCAGCCGGGGTTACA GCCGGT CAG ATCGGC TTTGCCATCATTATT YPK_1114 1254218 - 1253052 - | binding-protein-dependent transport systems inner membrane component YPK_1115 1255410 - 1254211 - | glycine betaine/L-proline ABC transporter, ATPase subunit TERM 1268 1256004 - 1256020 + r 80 -3.5 -5.37043 | GGCTAACTGCCTATT GGGGCTG AGT CTCCCCC TTTTTTATCTAGAAT YPK_1116 1257057 - 1256086 - | ribonucleoside-diphosphate reductase YPK_1117 1259314 - 1257164 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 1269 1257875 - 1257862 - G 85 -5.9 -5.03314 | CCGAGCCGTAAAAAA GACGC TCCC GCGCC AGATAACCGTGCAGG YPK_1118 1259700 - 1259296 - | NrdI protein YPK_1119 1259950 - 1259714 - | glutaredoxin-like protein NrdH TERM 1270 1260802 - 1260777 - g 90 -9 -4.63527 | gap 1, overlap 1260778 1260779 GCATCAGTTCAAAAA GC-GCCCGTGC AAAAA GCACAGGCAGC GAAAAAGCACCATAA YPK_1120 1260489 - 1260854 + | acid shock repeat-containing protein TERM 1271 1260894 - 1260913 + F 100 -9.3 -5.63504 | opp_overlap 1260896 CAGGTTAATCCCAAT CACCCAC TTAATT GTGGGTG TTTTTTTATAAGCTT YPK_1121 1261333 - 1261668 + | hypothetical protein YPK_1122 1262215 - 1261766 - | hypothetical protein TERM 1272 1262083 - 1262101 + g 73 -2.4 -5.10933 | opp_overlap 1262083, overlap 1262084 CCATTTCTTGCAACA TCGATTCA ATA TAAATCGG TTTTATTTTCAGTAG YPK_1123 1262718 - 1262380 - | hypothetical protein YPK_1124 1263226 - 1263438 + | cold-shock DNA-binding domain-containing protein TERM 1273 1263484 - 1263501 + F 100 -9.1 -6.25741 | opp_overlap 1263484 1263483 AAATAGATTTAGAAG CCTCGTC TTTT GACGGGG TTTTTTTTATTATTT TERM 1274 1264263 - 1264274 + G 79 -2.2 -5.36441 | CCTTGGTGGCAACTG CGTT ATTG AGCG TTTTTTCTGTCCCAG TERM 1275 1265291 - 1265278 - g 73 -2.3 -5.05601 | CATCAGAGAGAAAAA TGGCC TACC GGCTA AGATAACGCTTTGGT YPK_1125 1264220 - 1265797 + | extracellular solute-binding protein YPK_1126 1265797 - 1266765 + | binding-protein-dependent transport systems inner membrane component YPK_1127 1266762 - 1267568 + | binding-protein-dependent transport systems inner membrane component YPK_1128 1267568 - 1268374 + | ABC transporter related YPK_1129 1268367 - 1269032 + | ABC transporter related YPK_1130 1269151 - 1269276 + | hypothetical protein TERM 1276 1269471 - 1269486 + F 73 -2.5 -5.09521 | TTGATGGTAAATGCT GCGTC AGATTG GATGC TTTTTAATTTATTGA YPK_1131 1270231 - 1270533 + | urease, gamma subunit YPK_1132 1270544 - 1271020 + | urease, beta subunit TERM 1277 1271724 - 1271736 + G 73 -10.5 -3.14211 | opp_overlap 1271722, overlap 1271732 GAAAGGTAATTCATA CGGGC GCG GCCCG TTGCTGGAACAGGCT YPK_1133 1271110 - 1272828 + | urease, alpha subunit YPK_1134 1273124 - 1273819 + | UreE urease accessory domain-containing protein YPK_1135 1273841 - 1274527 + | urease accessory protein UreF YPK_1136 1274654 - 1275316 + | urease accessory protein UreG TERM 1278 1275705 - 1275685 - g 72 -6.2 -4.431 | overlap 1275699 CAGTCAGCCACAAAA GTTCACAT GATGA ATGCGAAC TACGCCTCGCAGATC YPK_1137 1275313 - 1276278 + | urease accessory protein UreD TERM 1279 1276341 - 1276362 + F 84 -10.1 -3.86346 | opp_overlap 1276342 1276344, overlap 1276342 1276344 GTCAGTCTATTGAAT AGAGGCTGG GTAC CCAGCCTCG TTTATCAGCCAGTGA TERM 1280 1276342 - 1276361 + F 100 -13.6 -2.91593 | opp_overlap 1276342 1276344, overlap 1276341 1276344 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 1281 1276361 - 1276342 - f 100 -13.6 -3.09327 | opp_overlap 1276341 1276342 1276344, overlap 1276344 TCAGTCTATTGAATA GAGGCTGG GTAC CCAGCCTC GTTTATCAGCCAGTG TERM 1282 1276359 - 1276344 - f 77 -10.4 -3.10522 | opp_overlap 1276342 1276341 1276344, overlap 1276342 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 1283 1276344 - 1276359 + F 76 -10.4 -3.00946 | opp_overlap 1276344 1276342, overlap 1276342 1276341 AGTCTATTGAATAGA GGCTGG GTAC CCAGCC TCGTTTATCAGCCAG TERM 1284 1276580 - 1276604 + G 71 -4.3 -4.72986 | opp_overlap 1276583 1276586 TCAGGTAATGTTTCA GAATAACCC ATTGACC GGGCTATTC TTTTTCATCGCAATA YPK_1138 1276470 - 1277462 + | urea transporter TERM 1285 1277570 - 1277538 - f 73 -10 -2.93853 | gap 1, overlap 1277535 ATAGACCTCAAATTA TTGGCGTTATCG-TG TTGT CAGCGATAACGCCAG GTCAGAACGGGTAGG TERM 1286 1278440 - 1278457 + G 71 -7 -3.99091 | opp_overlap 1278437 ATTACAATATCACTA TCACCG CCGCGT CGGTGA TTATTGCTTTCTTTA YPK_1139 1277611 - 1278669 + | high-affinity nickel-transporter TERM 1287 1278790 - 1278749 - T 91 -10.3 -4.20918 | opp_overlap 1278753, overlap 1278751 1278753 GGGAAGGCTAACAAA TAGAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTTTT TTTACAGGTTACATA TERM 1288 1278788 - 1278751 - T 100 -12.9 -3.70139 | opp_overlap 1278753, overlap 1278749 1278753 GAAGGCTAACAAATA GAGACACTCATTAACCG ATAA CGCTTAATGAGTGTCTT TTTTTACAGGTTACA TERM 1289 1278786 - 1278753 - T 100 -15.5 -3.4214 | opp_overlap 1278753, overlap 1278751 1278749 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTACAGGTTA TERM 1290 1278753 - 1278786 + T 100 -15.5 -5.43866 | opp_overlap 1278753 1278751 1278749 AGGCTAACAAATAGA GACACTCATTAACCG ATAA CGCTTAATGAGTGTC TTTTTTTACAGGTTA YPK_1140 1279163 - 1278834 - | hypothetical protein YPK_1141 1279778 - 1280953 + | TrkA domain-containing protein TERM 1291 1281014 - 1280993 - T 75 -7.3 -4.34402 | opp_overlap 1280993 GTGTTTATATCAAAA CACCCTC GGTTAAGT GAGGGTG TTTTTTTTGTCACGA TERM 1292 1280993 - 1281014 + T 100 -8 -5.93809 | opp_overlap 1280993 GTGTTTATATCAAAA CACCCTCG GTTAAG TGAGGGTG TTTTTTTTGTCACGA YPK_1142 1281455 - 1281051 - | camphor resistance CrcB protein YPK_1143 1281851 - 1281471 - | CrcB protein TERM 1293 1281564 - 1281582 + g 74 -11 -2.92668 | overlap 1281559 TGCTCTGCCTCGGGC TGTGGCCA GTT TGGCCGCA TCTAATTGCATACTG YPK_1144 1282892 - 1283209 + | phosphotransferase system lactose/cellobiose-specific IIB subunit YPK_1145 1283220 - 1284581 + | PTS system lactose/cellobiose family IIC subunit YPK_1146 1284748 - 1285095 + | phosphotransferase system PTS lactose/cellobiose-specific IIA subunit TERM 1294 1285460 - 1285490 + G 83 -6.8 -4.98061 | overlap 1285463 TGTCTCGGCCTATTG TGGCCTCTCAGGCG TAT CGCTTAAGAGGTGA TTTTCTTTCCTATAT TERM 1295 1285463 - 1285487 + G 78 -10.7 -3.34291 | overlap 1285460 CTCGGCCTATTGTGG CCTCTCAGGCG TAT CGCTTAAGAGG TGATTTTCTTTCCTA YPK_1147 1285132 - 1285974 + | AraC family transcriptional regulator YPK_1148 1286026 - 1286787 + | YdjC family protein YPK_1149 1286970 - 1286794 - | hypothetical protein TERM 1296 1287037 - 1287007 - R 100 -15.6 -2.91065 | opp_overlap 1287012, overlap 1286998 1287009 1287012 ATCATAGACATCACA GATAATGCCCCC ATTTTTA GGGGGCATTATC CTACAAGAGGCGACT TERM 1297 1287035 - 1287009 - R 93 -12.4 -3.00259 | opp_overlap 1287012, overlap 1286998 1287007 1287012 CATAGACATCACAGA TAATGCCCCC ATTTTTA GGGGGCATTA TCCTACAAGAGGCGA TERM 1298 1287012 - 1287032 + r 76 -9.7 -3.40403 | opp_overlap 1286998 1287009 1287007 1287012 AGACATCACAGATAA TGCCCCC ATTTTTA GGGGGCA TTATCCTACAAGAGG TERM 1299 1287032 - 1287012 - R 80 -9.7 -3.63762 | opp_overlap 1287012, overlap 1286998 1287009 1287007 AGACATCACAGATAA TGCCCCC ATTTTTA GGGGGCA TTATCCTACAAGAGG YPK_1150 1287451 - 1287083 - | hypothetical protein TERM 1300 1288186 - 1288197 + G 73 -7.2 -4.27467 | opp_overlap 1288182 GCAGAACAGAGTAGG GCGG TTAA CCGC TTTATGTTGGTATTA YPK_1151 1287946 - 1288473 + | SeqA family protein YPK_1152 1288546 - 1290189 + | phosphoglucomutase, alpha-D-glucose phosphate-specific TERM 1301 1290244 - 1290267 + F 100 -11.8 -5.53079 | gap 1, opp_overlap 1290244 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT TERM 1302 1290267 - 1290244 - f 86 -11.8 -3.16564 | gap 1, opp_overlap 1290244 TTGGCACTCGATCAA TCCGGC-ACAG GCT CTGTTGCCGGA TTTTTTATGTGTTTT TERM 1303 1290355 - 1290371 + F 75 -3 -5.11836 | TATTGGATGCCAATT CCATAT TTAAT GTATGG TTTTATTTTGAATGT YPK_1153 1290563 - 1290805 + | hypothetical protein YPK_1154 1291361 - 1290933 - | hypothetical protein YPK_1155 1292085 - 1291456 - | two component transcriptional regulator TERM 1304 1292739 - 1292753 + r 71 -4.2 -4.77567 | CTGCCTTCGTTATTC TGTCTG CTG CGGGCA TTTTGTTATCAACCT YPK_1156 1295494 - 1292768 - | osmosensitive K+ channel signal transduction histidine kinase TERM 1305 1292873 - 1292859 - G 75 -3.5 -5.08255 | opp_overlap 1292866, overlap 1292864 AGTGGCAAAACAAAA CGGAA GCTGG CTCCG CCCTCTTGACGCTTC YPK_1157 1296154 - 1295504 - | potassium-transporting ATPase, C subunit TERM 1306 1295979 - 1295995 + g 82 -12.3 -3.25942 | TTATCGCCCAGTCGC GCCAGTG AAC CACTGGC TTGCTGTGAAAACAT TERM 1307 1296184 - 1296211 + r 71 -9.8 -2.72855 | opp_overlap 1296184 1296183, overlap 1296186 TTTGTGTCTTAAAAC CGGCCACCGCAT CAGG GTGCGATGGCTG TGGTTAAACGGTTTA YPK_1158 1298384 - 1296318 - | K+-transporting ATPase, B subunit TERM 1308 1297631 - 1297597 - G 83 -9.2 -4.40298 | opp_overlap 1297597, overlap 1297598 AGGCAAACCAATAAA GCGACTAGCACGGTGA TGG TCACCGGGCTACCGGC TTGGCTGGCCTCCAC TERM 1309 1297629 - 1297598 - G 73 -10.2 -3.23094 | gap 1, opp_overlap 1297597, overlap 1297597 GGCAAACCAATAAAG CGACTAGCACGGTGA TGG TCACCGGGCTA-CCG GCTTGGCTGGCCTCC YPK_1159 1300166 - 1298478 - | potassium-transporting ATPase, A subunit TERM 1310 1298605 - 1298589 - G 73 -8 -4.05926 | overlap 1298581 1298592 CAATAAACCGATAAA CAACGG CCCAC CCGTTG GCAGGGTGCCGTTAC TERM 1311 1299257 - 1299245 - G 72 -10.5 -2.93447 | overlap 1299244 CTAACGGGGATAAAT GCGGG TTT CCCGC CAGTTCGGCGTACAT TERM 1312 1299408 - 1299392 - G 70 -2.2 -4.92783 | AAGGGATCAGAAAAA TGGCCA GCATT TGGACA AAATTACTGAATGCA TERM 1313 1300108 - 1300092 - G 81 -7.9 -4.60924 | CAAACGTGCTAAAAA CCCACCC AAC GGACGGG ACAACACGAACAACA TERM 1314 1300435 - 1300455 + H 71 -6.9 -4.12225 | opp_overlap 1300434 1300437 TTGGTTTGTGAAACT TACTTTCAC CGG GTGAATGTA TTTGGTTTGCTAATT TERM 1315 1300823 - 1300809 - g 73 -3.5 -4.84359 | GTATCTGGATAAAAA CCAGT GATAA ACCGG TTTGGCTGACCCAAT YPK_1160 1300661 - 1300867 + | hypothetical protein TERM 1316 1300919 - 1300943 + F 100 -12.1 -5.16237 | TACAAAAAATAGCTG GCCCGTGAGTA TCA TGCCCACGGGC TTTTTTAATGCGCTT YPK_1161 1300951 - 1301079 + | hypothetical protein YPK_1162 1301230 - 1301712 + | hypothetical protein TERM 1317 1302453 - 1302485 + G 74 -4 -4.91109 | opp_overlap 1302462, overlap 1302454 1302462 CCAGTTATTTCCTGC AGGGGAAGACGCTG CCTTA CAGCGTTTACGCCG TTTTTGTCGTGAACA YPK_1163 1301842 - 1303305 + | deoxyribodipyrimidine photo-lyase YPK_1164 1303296 - 1304333 + | cyclic-AMP phosphodiesterase YPK_1165 1304456 - 1305202 + | hypothetical protein TERM 1318 1305224 - 1305244 + T 100 -13.3 -2.9518 | overlap 1305240 GGATAGGGCTATTTT CGCCGATGT TTA GCATCGGCG TGTCTCCGTCTTACA YPK_1166 1305442 - 1305287 - | hypothetical protein YPK_1167 1305822 - 1306478 + | allophanate hydrolase subunit 1 YPK_1168 1306472 - 1307422 + | urea amidolyase related protein YPK_1169 1307419 - 1308156 + | LamB/YcsF family protein TERM 1319 1308833 - 1308859 + G 73 -7.3 -4.15841 | gap 1, overlap 1308836 CGGAACCATTGCATA TCGCGCTGTGGG GGAT CCCA-ACCGCGA TTTGTGCTTTCCTGA YPK_1170 1308241 - 1308972 + | hypothetical protein YPK_1171 1308969 - 1309988 + | hypothetical protein YPK_1172 1309998 - 1310645 + | pyrrolidone-carboxylate peptidase TERM 1320 1310684 - 1310657 - T 82 -10.6 -3.62597 | gap 1 CTGATCTTCCAATAA CCTCACGGCAGCC GAA GG-TGGCGTGAGG TTACAGACAACGTCC YPK_1173 1311422 - 1310736 - | uracil-DNA glycosylase TERM 1321 1311660 - 1311647 - H 73 -3.9 -5.0133 | overlap 1311651 GATGTGGTGAAAAAA TTGAT TTGA ATCAA AGAATGGTAGGGGCT YPK_1174 1311774 - 1312157 + | formate C-acetyltransferase glycine radical TERM 1322 1312206 - 1312221 + F 100 -10.4 -5.1675 | opp_overlap 1312204 AATCATAAAGTGATA GGGGAC TTCG GTCCCC TTTTTTCATGCCTGA YPK_1175 1312336 - 1313298 + | phospholipase A(1) YPK_1176 1313291 - 1313389 + | hypothetical protein YPK_1177 1313376 - 1314032 + | ankyrin YPK_1178 1313986 - 1314135 + | hypothetical protein TERM 1323 1314142 - 1314125 - T 74 -4.8 -4.78237 | opp_overlap 1314120, overlap 1314120 1314112 TATCTGACAACAAAA CCGCTA TGTGAG CAGCGG CTTTGTTGTCGTGCA YPK_1179 1315488 - 1314163 - | DEAD/DEAH box helicase domain-containing protein TERM 1324 1315254 - 1315269 + g 78 -5.4 -5.00616 | gap 1 GCGTCAGGATCAGGA TCCGCGG TGG CC-CGGA TTTTTTGCGGGGGAA YPK_1180 1315728 - 1316486 + | methyltransferase small TERM 1325 1316561 - 1316538 - T 83 -8.9 -4.08958 | gap 1, opp_overlap 1316537 AGCGTGAAATAAGAA TC-GGGCGTC GTAGA GACGCCCTGA GGTTATTGACAAAGT TERM 1326 1316636 - 1316662 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1316625, overlap 1316631 1316637 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1327 1316637 - 1316663 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1316625, overlap 1316631 1316636 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1328 1316723 - 1316747 + T 79 -11.4 -2.56539 | overlap 1316722 1316720 GGTTTGTCAGCAGTC TGCGGGCGTC GTAGA GACGCCCTCA ATCTTATGGATTCAG YPK_1181 1318406 - 1316769 - | L-aspartate oxidase TERM 1329 1316930 - 1316896 - G 74 -10.8 -2.79183 | opp_overlap 1316886 1316884 GCGACTTGTACCAGA TTCCGTAACTCCAGCA GGT TATTGGAGATACGGAA ATTGGCATAATATTC TERM 1330 1316986 - 1316996 + g 74 -6.8 -4.46212 | ATGCGCCGTAAAGCC CGCT CTA AGCG TTTTGTGGTACGGAC TERM 1331 1318244 - 1318234 - G 70 -2.4 -4.91109 | overlap 1318236 CCCTGAGCATAAAAA GTGG CTC CCTC ATTAAGAGGCCCTTT YPK_1182 1318594 - 1319169 + | ECF subfamily RNA polymerase sigma-24 factor YPK_1183 1319195 - 1319851 + | anti sigma-E protein, RseA TERM 1332 1319940 - 1319907 - g 91 -13.3 -3.59979 | gap 1, opp_overlap 1319909 CCTGTTCATGGCAAA CATTGCT-TCGGCGGA ATC TACGCCGATAGCAATG TTGCAGGAAATGGGC TERM 1333 1319909 - 1319938 + G 72 -10.1 -3.02144 | gap 1, opp_overlap 1319907 TGTTCATGGCAAACA TTGCT-TCGGCGGA ATC TACGCCGATAGCAA TGTTGCAGGAAATGG YPK_1184 1319851 - 1320807 + | sigma E regulatory protein, MucB/RseB TERM 1334 1321183 - 1321173 - g 71 -6.8 -4.26076 | TTACTGGCACGAAAA CTGG CAA CCAG AATTGAGGGGCTCAG YPK_1185 1320804 - 1321259 + | positive regulator of sigma E, RseC/MucC YPK_1186 1322134 - 1321280 - | hypothetical protein TERM 1335 1322154 - 1322174 + H 75 -8.3 -3.80733 | CTCTCCTCGTTACCG CCAAGAGAA TAT TTCACTTGG TTATTATAAAATCAC TERM 1336 1322638 - 1322625 - H 73 -3.9 -5.01497 | ACGACTAGAGAAAAA TTCAT ATAA ATGAA GCACATAAGAAACTT YPK_1187 1322634 - 1324433 + | GTP-binding protein LepA YPK_1188 1324443 - 1325441 + | signal peptidase I YPK_1189 1325859 - 1326473 + | ribonuclease III YPK_1190 1326470 - 1327381 + | GTP-binding protein Era TERM 1337 1327545 - 1327532 - g 75 -8.1 -4.27316 | opp_overlap 1327532 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT TERM 1338 1327532 - 1327545 + G 73 -8.1 -4.12599 | opp_overlap 1327532 CGTTCCAATTTAAAA GGCTG CTTG CAGCC TTTTACGCCGTTATT YPK_1191 1327391 - 1328116 + | DNA repair protein RecO YPK_1192 1328275 - 1329006 + | pyridoxal phosphate biosynthetic protein PdxJ YPK_1193 1329006 - 1329386 + | holo-acyl-carrier-protein synthase TERM 1339 1329415 - 1329439 + T 75 -5.8 -4.68593 | gap 1, opp_overlap 1329415 TAGCCGAAAATTTAA GGGATGGGTAT GGAA ATGC-CATCCC TTTTTGCATACTGGG YPK_1194 1329676 - 1329491 - | iron-sulfur cluster-binding protein YPK_1195 1329966 - 1331366 + | hypothetical protein YPK_1196 1331578 - 1331363 - | hypothetical protein YPK_1197 1332966 - 1331575 - | hypothetical protein TERM 1340 1333004 - 1332986 - R 95 -9.5 -4.57569 | opp_overlap 1332988 1332998 TTATTCCTGTAAAAA GCCCCGC ACTTG GCAGGGC TGGCTATCTTATGCA YPK_1198 1333840 - 1333013 - | putative DNA-binding protein (Roi) TERM 1341 1333612 - 1333600 - GR 72 -7.7 -3.86346 | TGATTCTCCCACAAA CCTCA ATT TGAGG AAGCTGGATGACGCC TERM 1342 1333778 - 1333805 + gr 100 -17.8 -4.98531 | GTTAGGTTTTTTAGA CGCGTCGGTAGT TGCT GCTACCGACGCG TTTTTCATTTCAAGA YPK_1199 1333997 - 1333815 - | hypothetical protein TERM 1343 1334065 - 1334014 - H 86 -12.1 -3.2056 | gap 2, opp_overlap 1334014 1334016 1334016 1334020 1334047, overlap 1334016 1334020 1334046 1334051 ATGCACACTCATTAA GATAAACCACCGTGGTTTA--TATT TCGA AATAAGTAAACCACGGTGGTTTATT GATGTCAATACCACC TERM 1344 1334016 - 1334063 + H 100 -16.6 -3.2794 | opp_overlap 1334014 1334016 1334020 1334046 1334051, overlap 1334014 1334016 1334020 1334047 GCACACTCATTAAGA TAAACCACCGTGGTTTATATTT CGAA ATAAGTAAACCACGGTGGTTTA TTGATGTCAATACCA TERM 1345 1334063 - 1334016 - H 100 -14.7 -3.16492 | gap 2, opp_overlap 1334016 1334014 1334016 1334020 1334047, overlap 1334014 1334020 1334046 1334051 GCACACTCATTAAGA TAAACCACCGTGGTTTA--TATT TCGA AATAAGTAAACCACGGTGGTTTA TTGATGTCAATACCA TERM 1346 1334020 - 1334059 + H 100 -13 -4.29508 | opp_overlap 1334016 1334014 1334020 1334046 1334051, overlap 1334016 1334014 1334016 1334047 ACTCATTAAGATAAA CCACCGTGGTTTATATTT CGAA ATAAGTAAACCACGGTGG TTTATTGATGTCAAT TERM 1347 1334059 - 1334020 - H 93 -11.1 -4.24075 | gap 2, opp_overlap 1334016 1334014 1334020 1334016 1334047, overlap 1334016 1334014 1334046 1334051 ACTCATTAAGATAAA CCACCGTGGTTTA--TATT TCGA AATAAGTAAACCACGGTGG TTTATTGATGTCAAT TERM 1348 1334084 - 1334051 - H 88 -9.8 -4.14764 | gap 2, opp_overlap 1334020 1334016 1334047 1334080, overlap 1334020 1334016 1334046 1334014 TTCGAAATAAGTAAA CCACGGTGGTTTATTG ATGT CAATA--CCACCGTGG TGCATAATTGCGTTA YPK_1200 1334124 - 1334435 + | Arc domain-containing protein YPK_1201 1334575 - 1334438 - | Arc domain-containing protein YPK_1202 1334841 - 1334572 - | VRR-NUC domain-containing protein YPK_1203 1335055 - 1334825 - | hypothetical protein TERM 1349 1334912 - 1334892 - G 73 -4.6 -4.68593 | opp_overlap 1334894 1334908, overlap 1334893 1334894 TGCATGATGCAAAAA TCGGAGCG GTTTT CGCTCCAC TCCTGATTGAGGGGA YPK_1204 1337141 - 1335060 - | DNA-directed DNA polymerase TERM 1350 1337222 - 1337200 - R 100 -12.7 -4.07568 | GCCCGCTCGTCAAAA CACCCCCGC ACAGG GCGGGGATG GGCTAGATTACTAGT YPK_1205 1338017 - 1337238 - | hypothetical protein TERM 1351 1338064 - 1338047 - R 76 -6.9 -4.53475 | ACCTGATAAAAAGAA CCCCAGC ATTT GCCAGGG TGATGGTGTACTACT YPK_1206 1338452 - 1338075 - | hypothetical protein TERM 1352 1338497 - 1338479 - R 90 -11.7 -3.6682 | CTGCAGGGAGGTAAA GCCCTGC ATTAA GCAGGGC ATAGGGATTAGATCA YPK_1207 1339053 - 1338505 - | hypothetical protein YPK_1208 1340376 - 1339066 - | hypothetical protein TERM 1353 1339592 - 1339604 + g 71 -9.1 -3.59293 | AAACTATGTTGTTCC CCTGC ATT GCAGG TTGCTTTGGCTTTAC TERM 1354 1339837 - 1339812 - G 72 -6.2 -4.42238 | gap 1 GCATGTGAATGAAAA GCCGTACG-CT AGTGA AGTCGTACAGC ATGGCGAATTGGTCT YPK_1209 1341113 - 1340379 - | hypothetical protein TERM 1355 1340431 - 1340448 + g 71 -4.8 -4.56775 | gap 1 TCCGGTAATTTGTCA GC-GGGG ACTTG CCCCAGC TTTTTAGCACCAAAT TERM 1356 1341026 - 1341013 - G 81 -9.5 -4.11216 | opp_overlap 1340990 GTGTCAGGGGTAAAA GCCGG TTTG CCGGC TGCCATCGCCACCAG TERM 1357 1341438 - 1341496 + r 100 -8.5 -5.48028 | gap 2, opp_overlap 1341436 1341439 1341442, overlap 1341437 1341439 AGTTTATTTATAATC -ACAATATGTGTTGGCTCAATC-ATCACA AAA TGTGATTGCTCGTGTCAACACATATTGTG TTTTATTTTTGTTTG TERM 1358 1341439 - 1341494 + r 100 -13.6 -4.3115 | gap 1, opp_overlap 1341436 1341439 1341442, overlap 1341437 1341438 GTTTATTTATAATCA CAATATGTGTTGGCTCAATC-ATCACA AAA TGTGATTGCTCGTGTCAACACATATTG TGTTTTATTTTTGTT TERM 1359 1341494 - 1341439 - R 93 -13.6 -2.8474 | gap 1, opp_overlap 1341437 1341439 1341438, overlap 1341436 1341442 GTTTATTTATAATCA CAATATGTGTTGGCTCAATC-ATCACA AAA TGTGATTGCTCGTGTCAACACATATTG TGTTTTATTTTTGTT TERM 1360 1341491 - 1341442 - R 76 -9.5 -3.57039 | gap 1, opp_overlap 1341437 1341439 1341438, overlap 1341436 1341439 TATTTATAATCACAA TATGTGTTGGCTCAATC-ATCACA AAA TGTGATTGCTCGTGTCAACACATA TTGTGTTTTATTTTT TERM 1361 1341538 - 1341524 - R 100 -8.5 -5.4505 | TTGGGTAATAAAAAA CCCGC GCGAG GCGGG CTATCGAAAAGAAGG YPK_1210 1342201 - 1341572 - | XRE family transcriptional regulator YPK_1211 1342347 - 1342562 + | XRE family transcriptional regulator TERM 1362 1342799 - 1342782 - g 75 -7.7 -4.15044 | opp_overlap 1342784 1342787, overlap 1342754 1342787 GGGGGGCGTAACAAA GCTAACG CTGG CGCTAGC CACGTTGTCCGTTTT YPK_1212 1342566 - 1344743 + | virulence-associated E family protein TERM 1363 1344814 - 1344781 - f 79 -11.1 -3.09635 | opp_overlap 1344791 ACGTTGAGTATCTAA CCTTAGCTAACCTCG TAGA CGTGGTTAGCTAAAA TAAATACGAATAAAA YPK_1213 1345022 - 1345234 + | hypothetical protein YPK_1214 1345316 - 1345741 + | hypothetical protein TERM 1364 1345784 - 1345805 + F 78 -7.2 -4.43283 | overlap 1345783 ACCTCAACATTTTAA GGCCTCGC CATTGT GCGGGGTC TTTCTGTTTGTGTGC TERM 1365 1345901 - 1345885 - f 73 -2.9 -5.09225 | overlap 1345887 ATCCTATGCAAAAAA CAGCACA TTT TATGCAG CATTTATGCAATCAG TERM 1366 1346064 - 1346083 + F 100 -9.2 -5.4251 | TTCCAGCTATTCGAG GGCTGCGC GATT GCGTGGCC TTTTTTATATCTAAC YPK_1215 1346113 - 1346493 + | hypothetical protein TERM 1367 1346581 - 1346601 + T 100 -8.2 -4.81851 | opp_overlap 1346574 1346581 CGCAAGCACAAAGAA GCCTCGGT TAATC GCCGGGGC TTTTTGCATTTAAAT YPK_1216 1347187 - 1346756 - | hypothetical protein TERM 1368 1347314 - 1347333 + H 100 -9.2 -4.84918 | CCGGCACTTATTCAG GGCTGCGC TTAT GCGTGGCC TTTTCTATTTATAAC YPK_1217 1347392 - 1347724 + | phage holin YPK_1218 1347711 - 1348106 + | peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YPK_1219 1348103 - 1348480 + | phage exported protein YPK_1220 1348700 - 1349251 + | terminase small subunit TERM 1369 1349268 - 1349253 - T 79 -8.2 -4.23647 | opp_overlap 1349252 AAATGATGGAATAAA CCCCGC CGAA ACGGGG CATTGTTCAGGGGAT YPK_1221 1349634 - 1349275 - | XRE family transcriptional regulator TERM 1370 1349686 - 1349669 - H 79 -8.3 -4.08064 | opp_overlap 1349670, overlap 1349670 AACTTCTGGGGAAAA TGGCGGG TTCC CCCGCCT TAGTACGTTGTTGAT TERM 1371 1349685 - 1349670 - H 86 -11.8 -3.04517 | opp_overlap 1349670, overlap 1349669 ACTTCTGGGGAAAAT GGCGGG TTCC CCCGCC TTAGTACGTTGTTGA TERM 1372 1349670 - 1349685 + H 89 -11.8 -3.25169 | opp_overlap 1349670 1349669 ACTTCTGGGGAAAAT GGCGGG TTCC CCCGCC TTAGTACGTTGTTGA TERM 1373 1350657 - 1350688 + G 78 -5.8 -4.72497 | gap 1, opp_overlap 1350659, overlap 1350659 GGAGAGGCGGGTGAT AACATCG-GGCGCGG TGA CCGCACTACGATGTA TTTTGTTGATGAGTC TERM 1374 1350659 - 1350686 + G 76 -8.4 -3.97413 | gap 1, opp_overlap 1350659, overlap 1350657 AGAGGCGGGTGATAA CATCG-GGCGCGG TGA CCGCACTACGATG TATTTTGTTGATGAG YPK_1222 1350090 - 1351694 + | hypothetical protein TERM 1375 1351883 - 1351903 + F 100 -8.9 -5.72622 | opp_overlap 1351883 ATCGTTTGAACGAGA GCCGGGGTT TTT ATCCTCGGC TTTTTTGTTTGTGCG TERM 1376 1352063 - 1352039 - gf 71 -9.9 -2.64616 | overlap 1352041 TCGCGAGTCAGACGA TAGCGCGACGG CAA CCGAGGCGCTA CAGGGGAAGATAAGC YPK_1223 1351947 - 1353485 + | hypothetical protein TERM 1377 1353476 - 1353464 - gf 100 -9.1 -5.54264 | AAACACCGAAAAAAA TGGCG AGA CGCCA ACCGCCTAAGCCCAA YPK_1224 1353442 - 1354323 + | putative head morphogenesis protein SPP1 gp7 TERM 1378 1354907 - 1354892 - g 100 -3.2 -6.22691 | opp_overlap 1354896, overlap 1354893 1354896 GAAGAAGAAAAAAAA GCACTG GCAG CATTGC TGGCCATGTTACCTG TERM 1379 1355205 - 1355226 + G 72 -10.1 -3.00946 | gap 1, opp_overlap 1355188, overlap 1355202 1355211 TGATGCGTGAAGTGT CGCGCC-GTG ATG CGCTGGCGCG TGATTTGTCGCGCCA YPK_1225 1354316 - 1355464 + | hypothetical protein YPK_1226 1355464 - 1355955 + | hypothetical protein TERM 1380 1356215 - 1356229 + G 76 -9.2 -3.88559 | ATCCAATTTCTGCAA GCCTGG CTA CCGGGC TTTGTGCGCATGATT YPK_1227 1355969 - 1357102 + | hypothetical protein TERM 1381 1357123 - 1357138 + F 100 -8.2 -5.93252 | opp_overlap 1357123 ACTATTGAACATCAA GGGGGC CAAT GCCTCC TTTTTTATTTTTAGG TERM 1382 1357316 - 1357289 - g 80 -2.6 -5.4505 | overlap 1357291 CGTCGCAACAAAAAA CCTCATTACGCC TAGA GGGGTTATGACG GCTGTAGAAGATGCA YPK_1228 1357161 - 1357529 + | hypothetical protein YPK_1229 1357539 - 1357970 + | hypothetical protein YPK_1230 1357970 - 1358467 + | hypothetical protein YPK_1231 1358467 - 1358850 + | hypothetical protein YPK_1232 1358840 - 1359379 + | hypothetical protein YPK_1233 1359392 - 1360906 + | hypothetical protein YPK_1234 1360918 - 1361358 + | hypothetical protein YPK_1235 1361358 - 1361813 + | hypothetical protein TERM 1383 1362024 - 1362000 - g 80 -2.7 -5.42514 | opp_overlap 1362018 1362021, overlap 1362002 CGAGAAATTAAAAAA CTCGGTATCAA GTG CCGATGCCGCG TCTGAAAAATTGGGC TERM 1384 1362018 - 1362045 + G 75 -6.2 -4.59773 | opp_overlap 1362002 1362000, overlap 1362021 GGTATCAAGTGCCGA TGCCGCGTCTGA AAAA TTGGGCGCGTCA TTTTTAAGCCTGGCG YPK_1236 1361899 - 1363470 + | hypothetical protein YPK_1237 1363470 - 1363979 + | hypothetical protein YPK_1238 1363981 - 1364283 + | hypothetical protein TERM 1385 1364397 - 1364384 - g 73 -2.3 -5.0133 | CATCCGGGCAAAAAA CAGCG GGTT CGTTG CAAAATGAATGCACG YPK_1239 1364287 - 1365126 + | hypothetical protein YPK_1240 1365108 - 1365785 + | hypothetical protein TERM 1386 1365901 - 1365891 - g 71 -6.8 -4.21936 | overlap 1365883 1365893 TGCAGAACTGCAAAA CAGC CAT GCTG GCCCAACGAAATGAA YPK_1241 1365782 - 1366141 + | hypothetical protein TERM 1387 1366425 - 1366413 - g 81 -7.7 -4.59511 | AACAGCTCTGAAAAA TCGGT CAT ACCGA GTGTCACATTGCGCG TERM 1388 1366862 - 1366848 - g 79 -10 -3.84825 | GGGATTTATATGAAA CCACAC AGC GTGTGG GCCTGTGTGCACGGC YPK_1242 1366125 - 1367324 + | hypothetical protein TERM 1389 1367358 - 1367369 + F 95 -5.8 -5.60993 | opp_overlap 1367357 1367358, overlap 1367357 ATTGAATATAGAAAG CTGC TTCG GCAG TTTTTTTATGGGCGC YPK_1243 1367390 - 1369201 + | hypothetical protein YPK_1244 1369205 - 1369426 + | hypothetical protein TERM 1390 1369702 - 1369726 + G 83 -13 -3.08465 | TCGCGTACGGTGCCG GCGTTGTTGT CATGT ACAACAACGC TCTCTATCTGTCACT YPK_1245 1369419 - 1371200 + | Ig-like domain-containing protein TERM 1391 1371222 - 1371205 - T 100 -9.8 -5.72622 | opp_overlap 1371212 TTGAGAAATAAAAAA CCGGGC TGATTG GCCCGG ACGCCTATCTTACTT YPK_1246 1371510 - 1371232 - | hypothetical protein YPK_1247 1372009 - 1371491 - | hypothetical protein TERM 1392 1372082 - 1372100 + r 73 -3.9 -4.96028 | AAGAGTTATCAAGCG CGATTGA CATTT TCAATTG TTGTTTTTTTTACGC YPK_1248 1373296 - 1372457 - | RpiR family transcriptional regulator TERM 1393 1372973 - 1372986 + g 71 -4.5 -4.5442 | overlap 1372974 AATGTCTAGGGTTGC TCGCA GTGC TGCGG TTTTCTCGTTCAGCA YPK_1249 1373504 - 1374391 + | glucokinase regulatory-like protein YPK_1250 1374618 - 1375313 + | HAD family hydrolase YfhB TERM 1394 1375817 - 1375805 - g 73 -4.7 -4.72386 | CAAATGATGTAAAAA CCGGC GCC GCGGG GTCGCTGGTAGATAT YPK_1251 1375423 - 1375986 + | CMP/dCMP deaminase zinc-binding TERM 1395 1376002 - 1376032 + T 79 -11 -3.18912 | overlap 1376003 CGGCGGCCAGGTGAT GCGCCGCCCAGCAT GTT ATGACGGGCGGCGG TTGGTGACTAAATCA TERM 1396 1376003 - 1376031 + T 100 -14.5 -2.51133 | overlap 1376002 GGCGGCCAGGTGATG CGCCGCCCAGCAT GTT ATGACGGGCGGCG GTTGGTGACTAAATC YPK_1252 1377654 - 1376113 - | lytic transglycosylase catalytic TERM 1397 1376177 - 1376193 + g 100 -6.5 -5.69068 | overlap 1376165 AGCTCCGCCTCAATG GCGGC ATGTTGA GCCGC TTTTTTCTCTTTTTC TERM 1398 1379178 - 1379167 - g 75 -5.8 -4.60487 | overlap 1379175 GATCATGTGCAAAAA GGTG AAAT CACC GTGGGGGCCAAATTG TERM 1399 1379875 - 1379834 - g 74 -2.9 -5.0538 | gap 1, opp_overlap 1379860 CGGTAGCGGAAAAAA CCTTCCTGATCACCAT-CGG CGA CCGCACGGTAACCGGTATGG TCACCCGTGATCAGA TERM 1400 1380836 - 1380823 - g 70 -8.1 -3.95073 | opp_overlap 1380822 1380823, overlap 1380827 GTGTACAGCGAGAAA CGCAG CACT CTGCG CTTGTGGTGGGCAGA YPK_1253 1377889 - 1381779 + | phosphoribosylformylglycinamidine synthase TERM 1401 1381891 - 1381917 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1381880, overlap 1381886 1381892 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1402 1381892 - 1381918 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1381880, overlap 1381886 1381891 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1403 1381979 - 1382001 + T 90 -11.4 -3.60597 | overlap 1381977 1381982 GTTTGTCAGCAGTCT GAAGGGTATT GAA GATACCCTTC TCTTTATCAATTTAT TERM 1404 1381982 - 1381998 + T 72 -7.3 -3.91369 | overlap 1381979 1381977 TGTCAGCAGTCTGAA GGGTATT GAA GATACCC TTCTCTTTATCAATT TERM 1405 1382115 - 1382143 + T 70 -2.6 -5.06411 | gap 1, overlap 1382121 TCCCTTGTTGCCTTT CTGTA-ACTCAAA TTAT TTTGGGTATATAG TTTATTTTATTTTAT YPK_1254 1382645 - 1382196 - | hypothetical protein TERM 1406 1382814 - 1382828 + r 73 -8.6 -3.68222 | ATAACCGTTGTCATC CAAGTC ACT GACTTG TTGTTGACCTTAAAA YPK_1255 1383657 - 1383097 - | hypothetical protein TERM 1407 1384525 - 1384558 + H 80 -9.8 -3.617 | gap 2, opp_overlap 1384522, overlap 1384520 1384525 1384531 GGCATCCACATATTC TTG--CAACGGGGCAA TTTA TTGCCCCGTTGATCAA TGTTTAGTTGTCTAT TERM 1408 1384531 - 1384550 + H 100 -13.6 -3.23638 | opp_overlap 1384522, overlap 1384525 1384525 1384520 CACATATTCTTGCAA CGGGGCAA TTTA TTGCCCCG TTGATCAATGTTTAG TERM 1409 1384712 - 1384733 + G 100 -8.1 -6.25741 | gap 1, opp_overlap 1384712 CAACCTTTAAAAAAA GCACTTTGCT CGC AGCAA-GTGC TTTTTTTTGTTATTT TERM 1410 1384733 - 1384712 - g 95 -8.1 -5.43866 | gap 1, opp_overlap 1384712 CAACCTTTAAAAAAA GCACTTTGCT CGC AGCAA-GTGC TTTTTTTTGTTATTT YPK_1256 1384673 - 1384774 + | hypothetical protein TERM 1411 1385676 - 1385648 - g 70 -2.4 -4.90266 | gap 2, overlap 1385650 CCCATGAATTAAAAA CGCCCCT-CGC-CA GTA TGCGTGAAGGGACG GAGCTCTTGGCCGAT YPK_1257 1384852 - 1386288 + | integral membrane sensor signal transduction histidine kinase TERM 1412 1386378 - 1386394 + GF 89 -7.3 -5.00884 | CGTGAAACAGACCGG TCTCTCT GGC AGAGGGA TTTTTTGGGGAGCGT TERM 1413 1387159 - 1387141 - gf 72 -7.4 -3.93383 | overlap 1387150 CCAACAGACACCAAA CCAACTGA AGC TCAGCCGG TTGCCCCTAAGTCAA YPK_1258 1386292 - 1387359 + | lipoprotein TERM 1414 1388306 - 1388317 + GF 73 -7.2 -4.19371 | CGGGAGTCGGCTAAG CGGC ATAA GCCG TTTGTTCGCAGTTTC YPK_1259 1387322 - 1388659 + | two component, sigma54 specific, Fis family transcriptional regulator YPK_1260 1388679 - 1388822 + | hypothetical protein YPK_1261 1388819 - 1390441 + | NAD+ synthetase YPK_1262 1390456 - 1390794 + | nitrogen regulatory protein P-II TERM 1415 1390833 - 1390858 + T 91 -6.2 -5.50499 | gap 1, opp_overlap 1390833 GCTGAATAACAAAAG CCCGT-TCGTT GCCAA AACGATGCGGG TTTTTTTACATATAA YPK_1263 1391954 - 1391022 - | hypothetical protein TERM 1416 1392348 - 1392321 - R 80 -9.9 -3.695 | overlap 1392322 TTGAAATAGCCGAAA TGCTGATCAGG TACCTT CCTGATCAGCG GCATTAAGTGCGTAG TERM 1417 1392347 - 1392322 - R 93 -13.4 -2.81218 | overlap 1392321 TGAAATAGCCGAAAT GCTGATCAGG TACCTT CCTGATCAGC GGCATTAAGTGCGTA YPK_1264 1393575 - 1392385 - | globin TERM 1418 1392840 - 1392824 - G 70 -2.1 -4.89966 | opp_overlap 1392831, overlap 1392825 ACATCCAAAAAGAAA TCGCCAC GGG GTGGTGC GATGCGCACGATATC TERM 1419 1393730 - 1393718 - H 80 -6.3 -4.87626 | overlap 1393711 GCTGAAGATGAAAAA TTCAC ATA GTGAA TATGAGGATAATTCT YPK_1265 1394116 - 1395369 + | glycine hydroxymethyltransferase TERM 1420 1395383 - 1395404 + F 95 -11.5 -3.86202 | AAGGCGGCTGTCACC GTCCTGGCC TCCT GGCCGGGGC TTTGATCTCATCGGG YPK_1266 1395482 - 1395703 + | hypothetical protein YPK_1267 1395703 - 1395828 + | hypothetical protein YPK_1268 1395821 - 1396360 + | virulence-related outer membrane protein TERM 1421 1396397 - 1396381 - f 72 -6.5 -4.3534 | opp_overlap 1396382, overlap 1396382 TCCTAACCATGAAAA CCCACCA TAA TGGTGGT TTCAGATTGCTGACA TERM 1422 1396396 - 1396382 - f 74 -10 -3.20722 | opp_overlap 1396382, overlap 1396381 CCTAACCATGAAAAC CCACCA TAA TGGTGG TTTCAGATTGCTGAC TERM 1423 1396382 - 1396396 + F 80 -10 -3.67976 | opp_overlap 1396382 1396381 CCTAACCATGAAAAC CCACCA TAA TGGTGG TTTCAGATTGCTGAC YPK_1269 1396874 - 1398031 + | chloramphenicol O-acetyltransferase YPK_1270 1399389 - 1398028 - | transcriptional antiterminator, BglG TERM 1424 1398117 - 1398090 - G 83 -12.8 -3.03781 | opp_overlap 1398091, overlap 1398085 TTAACGGAAATGATA TCTGAATCAGCG GCGG CGCTGATTCAGT TGATTGCAAAACATA TERM 1425 1398091 - 1398116 + g 100 -16.3 -3.33815 | opp_overlap 1398090 1398085 TAACGGAAATGATAT CTGAATCAGCG GCGG CGCTGATTCAG TTGATTGCAAAACAT TERM 1426 1399813 - 1399827 + G 73 -10 -3.36073 | overlap 1399812 GAAGTGATGGCTAAT GTGCTG GGG CAGCAC TATTTCACCGATATA YPK_1271 1399531 - 1400205 + | hypothetical protein YPK_1272 1400196 - 1401218 + | high-affinity nickel-transporter TERM 1427 1401263 - 1401286 + T 100 -10.3 -4.96848 | opp_overlap 1401263 TTCCCAATAAAAAAA GCCAGTCGG CTAACC CTGACTGGC TTTTTATCTGAAACG TERM 1428 1401286 - 1401263 - T 100 -8.9 -5.7946 | gap 1, opp_overlap 1401263 TTCCCAATAAAAAAA GCCAGTC-GG CTAAC CCTGACTGGC TTTTTATCTGAAACG YPK_1273 1402120 - 1401317 - | inositol-phosphate phosphatase TERM 1429 1402355 - 1402318 - g 83 -9.5 -4.29738 | gap 1, opp_overlap 1402322 1402324 1402353 CCAGAGCCATGAAAA CAATGGGATTAACCAA TCTATAT TTGGTTAATCC-ATTG GTAAAACCAGATTCT YPK_1274 1402239 - 1403012 + | RNA methyltransferase TERM 1430 1403336 - 1403323 - g 71 -3.8 -4.66163 | ACGCCTACGTAAAAA TGGC TTAGTC GCCA GCGTACGCGGCCCAG YPK_1275 1403105 - 1403662 + | BadM/Rrf2 family transcriptional regulator YPK_1276 1403716 - 1404945 + | cysteine desulfurase IscS YPK_1277 1404976 - 1405362 + | FeS cluster assembly scaffold IscU YPK_1278 1405632 - 1405955 + | iron-sulfur cluster assembly protein IscA YPK_1279 1406066 - 1406590 + | co-chaperone Hsc20 TERM 1431 1408578 - 1408599 + G 91 -13.7 -3.61398 | opp_overlap 1408575 TGAGCAAGAAAGTGC CGCGATCGC CCAA GCGGTCGCG TTATTACAGCAGCAG TERM 1432 1408687 - 1408718 + G 100 -15.2 -3.56568 | overlap 1408714 ACGCAAGATTTTGCC GCACGCCGGATGGA CGCT TCCATTCGCCGTGC TTTAGCAGGTCATTC YPK_1280 1406833 - 1408749 + | Fe-S protein assembly chaperone HscA YPK_1281 1408752 - 1409087 + | ferredoxin, 2Fe-2S type, ISC system YPK_1282 1409117 - 1409317 + | FeS assembly protein IscX TERM 1433 1409328 - 1409343 + G 100 -8.2 -5.49234 | AGTGAATACTGACTG GGTCGC GCAA GCGGCC TTTTTTATTGCGTAT YPK_1283 1409314 - 1409412 + | hypothetical protein TERM 1434 1410365 - 1410344 - g 71 -6.5 -4.25104 | opp_overlap 1410334 TGCCTCCGAGCAAAA TGCGCCGTT GATT ATCGACGCA GCCACCTTAACCGGC YPK_1284 1409457 - 1410755 + | PepB aminopeptidase TERM 1435 1410805 - 1410775 - f 71 -8.9 -3.28368 | opp_overlap 1410770 1410781, overlap 1410766 1410781 ATTGAATTGAGAAGA CTCAAAGGGGCGC ATTTG GCGTCCCTTCGTG CATCTTCTCGACGTT TERM 1436 1410781 - 1410799 + F 72 -9.5 -3.22894 | opp_overlap 1410775 1410781, overlap 1410770 TTGAGAAGACTCAAA GGGGCGC ATTTG GCGTCCC TTCGTGCATCTTCTC TERM 1437 1410799 - 1410781 - f 70 -7.3 -3.79071 | opp_overlap 1410781 1410770, overlap 1410775 TTGAGAAGACTCAAA GGGGCGC ATTTG GCGTCCC TTCGTGCATCTTCTC TERM 1438 1411071 - 1411093 + G 71 -8.5 -3.7398 | gap 1, overlap 1411070 GATGGCGAAATGAGT TTCACCACCG CTAA CGG-GGTGAA TATTTTGCATTGGGA TERM 1439 1411359 - 1411337 - g 93 -13.4 -3.61715 | GATGCTGTTGAAGAA CGGCGGGTTG GTG CAACCCGCTG AAATGGTGGTAGACA TERM 1440 1411532 - 1411515 - g 85 -7.7 -4.7254 | AGTGTTGATGAAAAA CCCAACC TGTT GATTGGG TTGGAAGTGGATGGC YPK_1285 1410834 - 1411751 + | SseB family protein TERM 1441 1411789 - 1411770 - T 79 -10.7 -3.11281 | overlap 1411768 1411766 GTATCTAAAAGGATA GGGAGCC AATAGA GGCTCCC AGACTGCTGACAAAC TERM 1442 1411876 - 1411850 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1411859, overlap 1411851 1411866 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1443 1411877 - 1411851 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1411859, overlap 1411850 1411866 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1444 1411955 - 1411974 + T 81 -10.7 -3.32997 | TTGTCAATAACCTCA GGGAGCC AATAGA GGCTCCC TTCCATTTCTGCCAC YPK_1286 1413709 - 1412021 - | outer membrane autotransporter YPK_1287 1415118 - 1413754 - | pertactin TERM 1445 1416328 - 1416318 - g 75 -3.2 -5.12068 | TATATTCAATAAAAA TCCC TCC AGGA ATGCAAACTACAGTC TERM 1446 1416712 - 1416733 + G 74 -3.1 -5.17507 | TTTGTTTAATTTAAG TGACAAA AGTAGTAA TTTGTCA TTTTTATTGCGTTTT TERM 1447 1417659 - 1417671 + G 74 -6.3 -4.37092 | GTTATGAACTGGCAC TGGTA GAT TACCA TTTTATCGAGACGGT YPK_1288 1415834 - 1418254 + | beta and gamma crystallin YPK_1289 1418581 - 1419009 + | nucleoside-diphosphate kinase TERM 1448 1419136 - 1419175 + F 100 -13.6 -4.11906 | opp_overlap 1419136 1419137, overlap 1419141 TTAAAATTTGTACAA TGCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTTCTA TTATTTATACATTCT TERM 1449 1419175 - 1419136 - f 74 -9.2 -3.36518 | opp_overlap 1419136 1419141, overlap 1419137 TTAAAATTTGTACAA TGCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTTCTA TTATTTATACATTCT TERM 1450 1419173 - 1419137 - f 80 -11.6 -2.61429 | gap 1, opp_overlap 1419136 1419141, overlap 1419136 TAAAATTTGTACAAT GCCACGCCCCAGTAGAG ACAG CTCTGCTGGGGCGTT-C TATTATTTATACATT TERM 1451 1419141 - 1419170 + F 100 -20.1 -3.93744 | opp_overlap 1419137 1419136, overlap 1419136 ATTTGTACAATGCCA CGCCCCAGTAGAG ACAG CTCTGCTGGGGCG TTCTATTATTTATAC YPK_1290 1419271 - 1420467 + | radical SAM protein YPK_1291 1420621 - 1421370 + | type IV pilus biogenesis/stability protein PilW YPK_1292 1421360 - 1422466 + | XRE family transcriptional regulator TERM 1452 1422693 - 1422682 - g 72 -5.8 -4.44797 | opp_overlap 1422690, overlap 1422627 TGACCAATACCAAAA CCAC GGAT GTGG ATGCCACTGTTGCCC TERM 1453 1423654 - 1423638 - g 74 -9.5 -3.55203 | AAAATTCGTGCCAAA GCATCAA TTC TTGATGC GAATAACCGGATTGT YPK_1293 1422570 - 1423697 + | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YPK_1294 1423906 - 1425180 + | histidyl-tRNA synthetase YPK_1295 1425194 - 1425829 + | hypothetical protein TERM 1454 1426786 - 1426805 + G 71 -6.4 -4.21974 | overlap 1426787 TCTGATGGCGGCGTA ACGCTTTG GAGT CAAAGCGA TTTATTGCATCGTAA TERM 1455 1426787 - 1426804 + G 70 -9.9 -3.12702 | overlap 1426786 CTGATGGCGGCGTAA CGCTTTG GAGT CAAAGCG ATTTATTGCATCGTA YPK_1296 1425841 - 1427022 + | outer membrane assembly lipoprotein YfgL TERM 1456 1427089 - 1427067 - f 100 -10.5 -4.63527 | opp_overlap 1427067 1427084 CCAGTACCTCAAAAA CGGCTCCTG GGACT CAGGGGCCG TTTGTATTCTAAAAA TERM 1457 1427067 - 1427089 + F 100 -13.4 -4.27117 | opp_overlap 1427067, overlap 1427084 CCAGTACCTCAAAAA CGGCTCCTGG GAC TCAGGGGCCG TTTGTATTCTAAAAA YPK_1297 1427170 - 1428657 + | small GTP-binding protein TERM 1458 1428776 - 1428802 + F 86 -10.1 -3.9749 | gap 1, overlap 1428775 CTTCCTTGGGAGCTT GAG-CCGCGCCA TCTC TGGCGCGGACAC TTTACTCTTCTGCCT TERM 1459 1428853 - 1428864 + F 85 -2.2 -5.77988 | CGTCATCGGGGTTTG TCAG TAGC CTGG TTTTTTTCTCTATAT YPK_1298 1429026 - 1429982 + | auxin efflux carrier YPK_1299 1430031 - 1430255 + | hypothetical protein YPK_1300 1430275 - 1430385 + | hypothetical protein YPK_1301 1431718 - 1430339 - | exodeoxyribonuclease VII, large subunit TERM 1460 1432427 - 1432411 - g 70 -2.2 -5.00616 | overlap 1432413 TTGTGCTGCAAAAAA TGCACG AAAAA CGTGTA GAGAAAGTGTTGGTC YPK_1302 1431888 - 1433351 + | inosine-5'-monophosphate dehydrogenase TERM 1461 1433364 - 1433394 + F 100 -9.9 -5.79595 | opp_overlap 1433364 1433367 1433368 TAACAATTAGTTAAA TAATCATCTGGTG CTGGC CATCAGATGGTTA TTTTTTATTTTAAAA YPK_1303 1433531 - 1435108 + | GMP synthase, large subunit TERM 1462 1435175 - 1435156 - T 84 -6.4 -4.98616 | opp_overlap 1435156 TGAAAATAGCAAAAA CCGCCT TGAATATT AGGCGG TTTGAGGTTATTGAC TERM 1463 1435330 - 1435311 - T 70 -7.8 -3.58343 | opp_overlap 1435311 GCCAGCAGTCTGAAA CCGCCTTA AATA TTAGGCGG TTTTTTTGTTTTTAT TERM 1464 1435311 - 1435330 + T 100 -7.8 -6.23317 | opp_overlap 1435311 GCCAGCAGTCTGAAA CCGCCTTA AATA TTAGGCGG TTTTTTTGTTTTTAT YPK_1304 1435871 - 1435392 - | Hcp1 family type VI secretion system effector YPK_1305 1436128 - 1435895 - | hypothetical protein YPK_1306 1436157 - 1436345 + | hypothetical protein YPK_1307 1436752 - 1436357 - | hypothetical protein TERM 1465 1436800 - 1436810 + r 70 -2.6 -4.96848 | AAATTACTTTCTTGT TAAA TAT TTTA TTTTTATCTACAAAG YPK_1308 1437209 - 1436814 - | hypothetical protein YPK_1309 1437668 - 1437273 - | hypothetical protein YPK_1310 1438585 - 1437665 - | hypothetical protein TERM 1466 1437916 - 1437906 - G 77 -6.8 -4.49377 | CCTACAATAAAAGAA GTCG CCG CGAC AATGGCTATTTTAGC TERM 1467 1438926 - 1438941 + H 95 -7.6 -5.07011 | opp_overlap 1438925 GTGTAAAGATCAATG TCGTCA ATAA TGACGA TTTTTCATTTGTATA TERM 1468 1439538 - 1439512 - g 74 -3.1 -5.00884 | gap 1, opp_overlap 1439536, overlap 1439514 ATTCTGTTGAAAAAA CACCATCAACAT ATTG ATGCTAATGG-G CAAAGCTCTTCTATA YPK_1311 1439041 - 1439775 + | hypothetical protein TERM 1469 1440679 - 1440667 - g 70 -2 -5.00616 | opp_overlap 1440667 CGTTCGCGCAAAAAA TTCA TGCGC TGAA AATTTATTTTGACCG YPK_1312 1439928 - 1440869 + | hypothetical protein YPK_1315 1447510 - 1441580 - | Ig domain-containing protein TERM 1470 1442725 - 1442769 + g 79 -11.3 -3.55444 | opp_overlap 1442762 CACCGCTGGCCTGCT CGGTCACATTGCCCAGCGTCC CGA GGGTGCTGGTAAAGGCGACCG TTTGACCGGTAACCG TERM 1471 1443028 - 1443072 + g 79 -11.3 -3.55444 | opp_overlap 1443065 CACCACTGGCCTGCT CGGTCACATTGCCCAGCGTCC CGA GGGTGCTGGTAAAGGCGACCG TTTGACCGGTGACCG TERM 1472 1443331 - 1443375 + g 79 -11.3 -3.55444 | opp_overlap 1443368 CACCACTGGCCTGCT CGGTCACATTGCCCAGCGTCC CGA GGGTGCTGGTAAAGGCGACCG TTTGACCGGTGACCG TERM 1473 1443634 - 1443678 + g 79 -11.3 -3.55444 | opp_overlap 1443671 GGCCGCTGGCCTGCT CGGTCACATTGCCCAGCGTCC CGA GGGTGCTGGTAAAGGCGACCG TTTGACCGGTAACCG TERM 1474 1443937 - 1443981 + g 79 -11.3 -3.55444 | opp_overlap 1443974 GGCCGCTGGCCTGCT CGGTCACATTGCCCAGCGTCC CGA GGGTGCTGGTAAAGGCGACCG TTTGACCGGTAACCG TERM 1475 1444289 - 1444301 + g 85 -10.5 -4.13244 | opp_overlap 1444277 AAAGGCGACCGTCTG CCCGG TGA CCGGG TTGTTGTTGTTATCA TERM 1476 1444543 - 1444587 + g 79 -11.3 -3.55444 | opp_overlap 1444580 CACCGCTGGCCTGCT CGGTCACATTGCCCAGCGTCC CGA GGGTGCTGGTAAAGGCGACCG TTTGACCGGTAACCG TERM 1477 1445840 - 1445864 + g 85 -11.4 -3.73783 | GTCGTCTTTCAGCGT CAGCGTCACC ACCGA GGTGTCGCTG TTATTGGCTTCGATA TERM 1478 1447070 - 1447049 - G 75 -10.1 -3.2963 | opp_overlap 1447040, overlap 1447050 ATCACCGTTGGATAA GGCAGTGGC ACCC GCCACTGCA TGACCGGCTAATGTA TERM 1479 1447069 - 1447050 - G 84 -13.6 -2.57564 | opp_overlap 1447040, overlap 1447049 TCACCGTTGGATAAG GCAGTGGC ACCC GCCACTGC ATGACCGGCTAATGT TERM 1480 1447838 - 1447826 - H 80 -6.3 -4.78839 | AACTCTATAATAAAA CACTA GCG TAGTG ATATAAGATTGAATA YPK_1316 1447960 - 1448121 + | insertion element protein YPK_1317 1449066 - 1448602 - | hypothetical protein TERM 1481 1450432 - 1450450 + G 71 -8.9 -3.57561 | ACCTGCCGTTCTCTT TTCAGCC ACTGC GGCTGAA TTTACGCCATTAGCC YPK_1320 1450406 - 1450498 + | hypothetical protein TERM 1482 1450639 - 1450629 - g 74 -6.8 -4.36914 | GCTGGTGGCACAAAA CACC CGT GGTG TGCAGTCGGTTTATC YPK_1321 1450495 - 1451295 + | phosphomethylpyrimidine kinase YPK_1322 1452243 - 1451323 - | hypothetical protein TERM 1483 1452031 - 1452042 + g 83 -7.2 -4.74518 | opp_overlap 1452021 AATGACAAAACCGTT CGCG GTAC CGCG TTTGTTTTGATAATT YPK_1323 1452474 - 1452983 + | inhibitor of vertebrate lysozyme TERM 1484 1452993 - 1453016 + T 73 -8.2 -3.61715 | CGCTGAGTTTTGCAC GTCATGACTC TTAT GAGTGATGAC TTATTGCCAACAATG TERM 1485 1453046 - 1453086 + T 76 -6.7 -4.56113 | opp_overlap 1453062 1453063, overlap 1453048 GCCCCGAATCGCCAA TGGCGGAGCAAGACAAGGG CGG TTCTCGCCGTGCTCCGCTG TTTATTTACTCTGTT TERM 1486 1453048 - 1453084 + T 81 -9.3 -3.8721 | opp_overlap 1453062 1453063, overlap 1453046 CCCGAATCGCCAATG GCGGAGCAAGACAAGGG CGG TTCTCGCCGTGCTCCGC TGTTTATTTACTCTG YPK_1324 1454160 - 1453270 - | diacylglycerol kinase catalytic region TERM 1487 1453395 - 1453429 + g 74 -6.5 -4.36508 | gap 1, overlap 1453392 TATCGTTCGGTGCAG TGATATCGA-GCCAAG GTAC CGTGGCGTCGATAACA TTCTTATTTTTCTCA TERM 1488 1454643 - 1454616 - R 100 -13.5 -5.66926 | GGAAAAAAAAGAAAA GGCCAGCCCAA GGGAGA TTGGGCTAGCC AAGGAGGTGGTTCCT TERM 1489 1454777 - 1454759 - R 85 -6 -5.17353 | opp_overlap 1454759 ATATTTACTAAAAAA TGCCAC TTTATCT GTGGCA TTCATTTTATTGAAT YPK_1325 1456191 - 1454797 - | peptidase U32 TERM 1490 1456406 - 1456384 - R 79 -7.7 -4.32046 | CGTGCAAAAATGAAA TGCGCGG TTAATGGCC CCGCGCA GGGATAAGTGGTCGT YPK_1326 1456827 - 1456489 - | hypothetical protein YPK_1327 1457683 - 1456964 - | two component transcriptional regulator YPK_1328 1459078 - 1457693 - | integral membrane sensor signal transduction histidine kinase TERM 1491 1458074 - 1458086 + g 80 -4.1 -5.18726 | TTCAGGCAGGTGGGC GGTGA TGG TCATC TTTTTGTTCTGGAAG YPK_1329 1460506 - 1459109 - | major facilitator transporter TERM 1492 1459449 - 1459430 - G 73 -8.6 -3.9461 | GCCTTGGAAGAATAA CACTACTG GCAT CAGCAGTG TCCAACCCATGATTG TERM 1493 1460083 - 1460042 - G 100 -10.8 -4.75404 | gap 1 AAATTCCACTAAAAA CCCGCCCAGCGCCGGGCCA ACTAA TGGCCCAAT-CTGGCCGGG CAGTGTGACAAACGC YPK_1330 1463614 - 1460540 - | acriflavin resistance protein YPK_1331 1466769 - 1463611 - | acriflavin resistance protein TERM 1494 1465148 - 1465113 - G 78 -9 -3.97042 | GGATCAGCAAGTAAA GTATCACCGTCAGCAC CAGT GTGCTGAACGCGACAC TTAGGGTCAGCCACG TERM 1495 1465916 - 1465932 + g 78 -5.8 -4.67697 | overlap 1465917 ATTGCTGATTGAGTA TTGGCC CAGGC GGCCAG TTTGTTATTTTCCGC TERM 1496 1466737 - 1466727 - G 71 -8.2 -3.75817 | overlap 1466725 1466728 GGCGCAGAATAAACA GCCG TGA CGGC CCGCCACCGGGTGTT YPK_1332 1468103 - 1466769 - | RND family efflux transporter MFP subunit TERM 1497 1468107 - 1468118 + r 75 -2.2 -5.31877 | gap 1, overlap 1468107 TTGAGATTTCATGAT GG-CG AAG CGTCC TTTTTTATCGTGGCT YPK_1333 1469576 - 1468491 - | spermidine/putrescine ABC transporter ATPase subunit YPK_1334 1471464 - 1469959 - | transcriptional regulator TERM 1498 1470063 - 1470080 + g 75 -5.5 -4.68593 | gap 1, opp_overlap 1470063 1470064, overlap 1470063 1470064 CATAACCGAGTAACA G-CCCTCG TCG CGGGGGAC TTTTTAAGTAATAGC TERM 1499 1470436 - 1470449 + g 75 -8.1 -4.26076 | GTAGCTGATACGCAT CCCTG GATA CAGGG TTTTACTGAAGGTAC TERM 1500 1470771 - 1470783 + g 74 -9.1 -3.67597 | ACACGTTGCGGATCC CCCAG TAG CTGGG TTCTTCAATCCAGGC TERM 1501 1471689 - 1471679 - g 71 -4.6 -4.50943 | opp_overlap 1471683 GAACAACGCAGAAAA GAGG CGA CCCC ACGTGGGATTGGTGT YPK_1335 1471646 - 1472935 + | 4-aminobutyrate aminotransferase TERM 1502 1473915 - 1473937 + G 73 -7.6 -4.13767 | GCTAATTTACCCACT GCGCCAGCCA ACC TGGCTGAGGC TTTTCCCATGAACAA YPK_1336 1472988 - 1474016 + | extracellular solute-binding protein TERM 1503 1474486 - 1474465 - g 85 -11.6 -3.70149 | TCGACACTACGGAAA GTACCGGC TGAAGG GCCGGTAC GTGAAGCGCTAATCA YPK_1337 1474063 - 1475328 + | binding-protein-dependent transport systems inner membrane component YPK_1338 1475390 - 1476238 + | binding-protein-dependent transport systems inner membrane component YPK_1339 1476310 - 1476450 + | hypothetical protein TERM 1504 1476492 - 1476465 - T 100 -9.9 -5.09204 | overlap 1476483 ATACGCCAACAAAAA CTCTCAGTGCG AGATAA CTCACTGAGAG GTGAACATAATAGGG YPK_1340 1477861 - 1476509 - | putative chaperone protein YPK_1341 1479476 - 1478001 - | magnesium transporter YPK_1342 1479716 - 1479528 - | hypothetical protein TERM 1505 1479852 - 1479888 + r 79 -8 -4.38712 | gap 1, opp_overlap 1479856, overlap 1479855 CGCTCATGCTGTCAA TTGACGCACCGGGTGAT GACA ACCACCCGGTGCA-CGA TTTTATCAGCGTCAG TERM 1506 1479885 - 1479856 - R 100 -16.5 -2.52676 | opp_overlap 1479855 1479852 CATGCTGTCAATTGA CGCACCGGGTGAT GACA ACCACCCGGTGCA CGATTTTATCAGCGT YPK_1343 1481464 - 1479905 - | Ppx/GppA phosphatase TERM 1507 1480397 - 1480409 + g 74 -6.3 -4.36914 | overlap 1480393 TTCCAGTTGGGGCTG TACCA GCT TGGTA TTTTGTGCCAACCAC YPK_1344 1483538 - 1481475 - | polyphosphate kinase TERM 1508 1484749 - 1484739 - g 76 -8.2 -4.09685 | opp_overlap 1484738 TTTGATGTGCGAAAA GGGC CAA GCCC ATCGTTCCATTTGAC YPK_1345 1483881 - 1486040 + | binding-protein-dependent transport systems inner membrane component YPK_1346 1486040 - 1487752 + | phosphate ABC transporter, inner membrane subunit PstA YPK_1347 1487780 - 1488592 + | phosphate ABC transporter, ATPase subunit TERM 1509 1489532 - 1489542 + G 74 -6.8 -4.37658 | AAGGTGTTATTGGCT TGCC TGG GGCA TTTTATGACACAATT TERM 1510 1489665 - 1489675 + G 73 -2.4 -5.06414 | opp_overlap 1489653 1489651 ATACCTGGTCTCAAC AGGC ATG GCCC TTTTTCTTACAGCAC YPK_1348 1488806 - 1489999 + | hypothetical protein TERM 1511 1490088 - 1490069 - T 88 -10 -4.20768 | ACGGGGAAGAAACAA TTGGGGCC ATCT GACCCCAA CGTATTAAGCATTTT YPK_1349 1490638 - 1490093 - | GCN5-related N-acetyltransferase YPK_1350 1491504 - 1490866 - | phosphoribosylglycinamide formyltransferase TERM 1512 1491317 - 1491305 - G 78 -7.7 -4.36262 | AGAGCCAGATCAAAA CTGAC GCG GTCAG TAAAAGCCTTGGCAT YPK_1351 1492662 - 1491619 - | phosphoribosylformylglycinamidine cyclo-ligase YPK_1352 1493097 - 1493723 + | uracil phosphoribosyltransferase TERM 1513 1493732 - 1493749 + F 100 -8.4 -6.11019 | opp_overlap 1493732 TAAATAACGATGATA GCCGAC GTGAAA GTCGGC TTTTTTTTGATTTTT TERM 1514 1494190 - 1494180 - g 79 -2.4 -5.47399 | CTAATTGTAAAAAAA GCGG GGA CCGG GTGGCTGGATGTCAT YPK_1353 1493850 - 1495136 + | uracil-xanthine permease TERM 1515 1495310 - 1495279 - f 72 -9.6 -3.22077 | gap 1, opp_overlap 1495280 1495281, overlap 1495277 1495275 1495281 CGTATAAAAACCAGA TAGGGCTGAACTG CGGTTGC CAGTTCAGCCC-A TTTTTCACCAAATTC TERM 1516 1495280 - 1495310 + F 100 -11.2 -4.58283 | opp_overlap 1495279 1495277 1495275 1495281, overlap 1495281 GTATAAAAACCAGAT AGGGCTGAACTG CGGTTGC CAGTTCAGCCCA TTTTTCACCAAATTC TERM 1517 1495281 - 1495309 + F 100 -14.7 -3.34488 | opp_overlap 1495279 1495277 1495275 1495281, overlap 1495280 TATAAAAACCAGATA GGGCTGAACTG CGGTTGC CAGTTCAGCCC ATTTTTCACCAAATT TERM 1518 1495309 - 1495281 - f 100 -14.7 -3.16187 | opp_overlap 1495281 1495280, overlap 1495279 1495277 1495275 TATAAAAACCAGATA GGGCTGAACTG CGGTTGC CAGTTCAGCCC ATTTTTCACCAAATT YPK_1354 1495395 - 1496102 + | DnaA regulatory inactivator Hda YPK_1355 1496671 - 1496315 - | arsenate reductase YPK_1356 1498352 - 1496778 - | peptidase M48 Ste24p TERM 1519 1498788 - 1498809 + G 71 -8.7 -3.63897 | overlap 1498786 CGTATTGGTTGTTCA CGATCCTGG GCGG CCAGTATCG TATTTGTGCTATTTG TERM 1520 1499166 - 1499179 + G 74 -9.5 -3.53091 | GTGCGCCGTGTTTTG CCGCG TAAC CGCGG TTTGGCCGGGCAGGT YPK_1357 1498593 - 1499657 + | hypothetical protein YPK_1358 1500263 - 1500958 + | hypothetical protein YPK_1359 1500962 - 1501381 + | hypothetical protein TERM 1521 1501568 - 1501583 + T 100 -10.4 -4.34711 | opp_overlap 1501570 TGTCAATAACCTCAA GAGCGC CAGA GCGCTC TTTTCCGTTAATTTT TERM 1522 1501649 - 1501666 + T 72 -9.9 -2.88768 | overlap 1501648 1501651 TTGGCGTAAGTAGTC CATCACG ATAT CGTGATG ATTATTAGTCTTGAA YPK_1360 1502095 - 1501625 - | peroxiredoxin YPK_1361 1502712 - 1502098 - | glycine cleavage system regulatory protein TERM 1523 1502535 - 1502521 - G 74 -6.4 -4.36554 | CAGCAGCATAATAAA GGTGAA CTC CTCACC GAACATAGCCAGCCG TERM 1524 1502732 - 1502721 - H 93 -2.2 -6.15717 | TAAACATAAAAAAAA CCTG CTGC CAAG CGCTTACAACACAGT YPK_1362 1502814 - 1503713 + | dihydrodipicolinate synthase TERM 1525 1504400 - 1504367 - g 85 -10.9 -3.86822 | GAAGGTTTGGATAAA GTGCGGGCTGACAGC GAGA GCAGTCAGGCCTCAC GTAAAGTCGGTACGC YPK_1363 1503731 - 1504789 + | NlpB/DapX family lipoprotein TERM 1526 1504792 - 1504815 + F 90 -11 -4.00042 | opp_overlap 1504792, overlap 1504797 CGCGATAAAATAAAA CCAAAGGGGC TTCG GCCCCTTTCG TTATTTCATGACGAC TERM 1527 1504815 - 1504792 - f 100 -11 -5.18371 | opp_overlap 1504792 1504797 CGCGATAAAATAAAA CCAAAGGGGC TTCG GCCCCTTTCG TTATTTCATGACGAC TERM 1528 1504797 - 1504810 + F 85 -9.5 -4.16371 | opp_overlap 1504792, overlap 1504792 TAAAATAAAACCAAA GGGGC TTCG GCCCC TTTCGTTATTTCATG YPK_1364 1504860 - 1505573 + | phosphoribosylaminoimidazole-succinocarboxamide synthase YPK_1365 1505746 - 1505570 - | hypothetical protein TERM 1529 1506177 - 1506190 + G 75 -5.9 -4.63218 | GTGGTACCGGTCAGT CGGTC ATGG GGCCG TTTTATTGCCCGGCA YPK_1366 1505792 - 1506661 + | protein of unknown function zinc metallopeptidase putative YPK_1367 1506755 - 1507207 + | hypothetical protein TERM 1530 1508098 - 1508110 + G 75 -3.3 -5.16237 | overlap 1508099 TACAGGGATATGAGG GCACG GGG CGTGG TTTTTTACTGAAATT TERM 1531 1508582 - 1508556 - g 78 -10.8 -3.29043 | overlap 1508557 1508559 AATCTGGTGGCACAA TCACTGGCCGCT CAT AGCGGGCAGTGG CAGGCACCAACGCTG TERM 1532 1508581 - 1508557 - g 87 -14.3 -2.57211 | overlap 1508556 1508559 ATCTGGTGGCACAAT CACTGGCCGCT CAT AGCGGGCAGTG GCAGGCACCAACGCT TERM 1533 1508579 - 1508559 - g 74 -11.1 -2.82623 | overlap 1508557 1508556 CTGGTGGCACAATCA CTGGCCGCT CAT AGCGGGCAG TGGCAGGCACCAACG YPK_1368 1507209 - 1509260 + | protein of unknown function DUF699 ATPase putative YPK_1369 1509383 - 1509508 + | hypothetical protein YPK_1370 1509744 - 1509550 - | hypothetical protein YPK_1371 1510489 - 1509812 - | peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin TERM 1534 1510410 - 1510386 - G 73 -7.9 -4.08767 | gap 1 TGCATTGCTTGAAAA GCCT-CAGCC GCCTGT GGCTGTAGGC GATGAGCGCCACTTA YPK_1372 1511613 - 1510486 - | succinyl-diaminopimelate desuccinylase TERM 1535 1511247 - 1511236 - G 71 -7.2 -3.9712 | opp_overlap 1511236 GGAGGTTATCATAAA GGCC AGGC GGCC TTTGTGATCAGGGTG TERM 1536 1511236 - 1511247 + g 71 -7.2 -3.96624 | opp_overlap 1511236 GGAGGTTATCATAAA GGCC AGGC GGCC TTTGTGATCAGGGTG YPK_1373 1512013 - 1511615 - | arsenate reductase and related YPK_1374 1512646 - 1512173 - | TPR repeat-containing protein TERM 1537 1512668 - 1512684 + H 71 -9.5 -2.96184 | overlap 1512667 1512670 CACACCGTGGCTTAT CAGCAAA CTG TTTGCTG CTTTAGATTTTGCTG TERM 1538 1513377 - 1513361 - g 75 -5.1 -4.74706 | opp_overlap 1513363 GGCAATATGGAAAAA CAAAGCC TAC GGCTCTA CTTACGAACCCGTTG TERM 1539 1513862 - 1513845 - g 73 -7.7 -4.03234 | opp_overlap 1513856 CTGCTCTCAGAGAAA GGCCAAA ATAT TCTGGCC AATCAGTCAGATATT YPK_1375 1512957 - 1514045 + | extracellular solute-binding protein TERM 1540 1514057 - 1514088 + F 81 -9.4 -3.75517 | gap 1, overlap 1514057 ATAGTGGCTTTATCT GGG-TGCGCTTGCCT TAT GGGCATGCGCAGTCC TTGGTTTTATCGGCT TERM 1541 1514057 - 1514087 + F 70 -9.6 -2.84587 | overlap 1514057 ATAGTGGCTTTATCT GGGTGCGCTTGCCT TAT GGGCATGCGCAGTC CTTGGTTTTATCGGC TERM 1542 1514287 - 1514301 + G 73 -2.1 -5.1471 | TCAAAGGTACTGAGT CTTGA TGCGT TCAGG TTTATTTTTTCTGAT YPK_1376 1514140 - 1515909 + | binding-protein-dependent transport systems inner membrane component YPK_1377 1515902 - 1516972 + | ABC transporter related TERM 1543 1517196 - 1517207 + F 71 -2.2 -5.10497 | CTCACCGTTTAATAT CGCA TCAT TGTG TTTTTTCAGTGGCTT TERM 1544 1518117 - 1518092 - g 70 -9.7 -3.16881 | opp_overlap 1518091 1518089 1518092 TACTCAGCCGATGAA TGGCAGCCTCA AAAC CGAGGCTTCCA GTATTTTATGGGTTA YPK_1378 1517450 - 1519123 + | sulfatase TERM 1545 1519156 - 1519132 - f 73 -8.5 -3.62478 | opp_overlap 1519132 1519134, overlap 1519124 1519125 GAATTAAGCCCCAAA GGCGGCAAGTA TTT TTCTTGCCGTC TGTCTATCTCCATGA TERM 1546 1519132 - 1519156 + F 79 -10.7 -3.05993 | opp_overlap 1519124 1519125 1519132, overlap 1519134 GAATTAAGCCCCAAA GGCGGCAAGTA TTT TTCTTGCCGTC TGTCTATCTCCATGA TERM 1547 1519134 - 1519154 + F 74 -9.7 -3.08465 | opp_overlap 1519125 1519132, overlap 1519132 ATTAAGCCCCAAAGG CGGCAAGTA TTT TTCTTGCCG TCTGTCTATCTCCAT TERM 1548 1519570 - 1519543 - g 71 -9.2 -3.54543 | ATTGATGGCCCTAAA GAGTTACACGAT CGCT ACCGTGTGACTC GCTCAGGCAAAGGAT TERM 1549 1520190 - 1520204 + G 71 -5 -4.57073 | overlap 1520192 TGATCAGGACAGCGA TGGGAT GAA ATCCTA TTTTTGCGCAGGGTA YPK_1379 1519180 - 1520355 + | radical SAM domain-containing protein TERM 1550 1520936 - 1520914 - T 79 -6.9 -4.58283 | opp_overlap 1520914 GAATCCTCGCAAAAA GGCAGAACC GTAGA GGCACTGCC TTTTTTATTACCCGC TERM 1551 1520914 - 1520936 + T 87 -4.7 -5.4505 | opp_overlap 1520914 GAATCCTCGCAAAAA GGCAGAACC GTAGA GGCACTGCC TTTTTTATTACCCGC YPK_1380 1521650 - 1521102 - | membrane-bound metal-dependent hydrolase TERM 1552 1521888 - 1521869 - R 74 -7.8 -4.01564 | overlap 1521870 1521872 TAAAATAGCCAGAAA GTAGGGCG GGGA CGCCCTAG GGTGAGTATTGCGCG TERM 1553 1521887 - 1521870 - R 83 -11.3 -2.99854 | overlap 1521869 1521872 AAAATAGCCAGAAAG TAGGGCG GGGA CGCCCTA GGGTGAGTATTGCGC TERM 1554 1521885 - 1521872 - R 71 -9.5 -3.0386 | overlap 1521870 1521869 AATAGCCAGAAAGTA GGGCG GGGA CGCCC TAGGGTGAGTATTGC YPK_1381 1522523 - 1521939 - | hypothetical protein TERM 1555 1522694 - 1522669 - R 76 -7.6 -4.20783 | ATCTGATGCAATAAA GCGGCATG GTTTTTTCGT CATGCCGC AGGGGAGAACCGACT YPK_1382 1525885 - 1522754 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1556 1523812 - 1523836 + g 74 -10.7 -2.77182 | opp_overlap 1523811, overlap 1523808 1523815 CGGCCATCAATTTAT CATGGCCATGG CCG CCATGGTCCTG TAATTCCATATCGAA TERM 1557 1525144 - 1525159 + g 71 -9 -3.5511 | overlap 1525142 CCCGTAGCGTAATTT CCCGAA ACTC TTCGGG TGTTTGTAGCTGGGA YPK_1383 1526300 - 1526578 + | hypothetical protein TERM 1558 1526576 - 1526596 + T 86 -2.6 -5.79595 | opp_overlap 1526576 1526579, overlap 1526579 TTAGCGGCCATTAAA TAGTGACA ACGGA TGTCAGTA TTTTTTATTTTCCAA YPK_1384 1527220 - 1526591 - | two component LuxR family transcriptional regulator TERM 1559 1527386 - 1527421 + H 80 -9 -3.9578 | CTATACCCGTCATAC TTCAAGTTGCAGGGGG CTGT CTTCCTGCCACTCGAA TTATTTAGCGTATGT TERM 1560 1527754 - 1527721 - H 73 -2.6 -5.11613 | opp_overlap 1527724, overlap 1527709 AGATTATCTAAAAAA TAATTATCAAAGCA TCGTCT TGTTTTGGTAATTA TTCCCGTTAAATGAA TERM 1561 1528257 - 1528268 + G 72 -5.8 -4.38154 | overlap 1528264 ATAGATTTTCAACGT GCTG AGTG CAGC TTTTGTCAGGCCTGT YPK_1385 1528053 - 1528556 + | ferredoxin-type protein NapF YPK_1386 1528546 - 1528812 + | NapD family protein TERM 1562 1529845 - 1529830 - g 85 -5.4 -5.26918 | gap 1 ACACGTTAGAAAAAA CCGC-CA AAA TGAGCGG TGTACCAGAAGATCA YPK_1387 1528809 - 1531301 + | periplasmic nitrate reductase, large subunit TERM 1563 1531596 - 1531564 - g 79 -2 -5.38549 | overlap 1531566 1531581 CCTAAACAACAAAAA CGGATGGC-GCTGAAC TAT GTTAACCAGCCA-CCG ATGATCCCACATAGC YPK_1388 1531384 - 1531851 + | nitrate reductase cytochrome c-type subunit (NapB) TERM 1564 1531827 - 1531839 + F 78 -9.1 -3.76224 | TGGTAATAGCTTCCA GCCAG CAC CTGGC TTTGGTCAGTAACCG YPK_1389 1531879 - 1532478 + | NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome TERM 1565 1532581 - 1532553 - f 77 -10.2 -3.22774 | opp_overlap 1532553 GAGAGTGATGATTAA CGCCCTGTGGAC TTTGC GTCGGCAGGGCG TTTTTACTGAGGTGT TERM 1566 1532553 - 1532581 + F 100 -12.4 -4.74132 | opp_overlap 1532553 GAGAGTGATGATTAA CGCCCTGTGGAC TTTGC GTCGGCAGGGCG TTTTTACTGAGGTGT YPK_1390 1532640 - 1533236 + | NUDIX hydrolase TERM 1567 1533530 - 1533513 - g 85 -11.3 -3.90112 | opp_overlap 1533512 1533511, overlap 1533497 GTTTCGCCAACCAAA CCGTTGG CGAC CCAACGG GATTTGGCACTGGCG TERM 1568 1534290 - 1534258 - g 71 -7 -4.13728 | gap 1, opp_overlap 1534264, overlap 1534249 CAGAGATGGTGAAAA CCATGGCACCGAATC CGTT GATTCTG-GCCCTGG CAAACCCGGAACCGG TERM 1569 1535292 - 1535321 + G 70 -7.9 -3.82191 | GCAGCTGAAACCGTG CGCCGTTTTGG TATTGAGC CCAAAGTGGCG TTGTTGTCCCATTCC YPK_1391 1533432 - 1535711 + | malate dehydrogenase YPK_1392 1536337 - 1535879 - | hypothetical protein TERM 1570 1536121 - 1536134 + g 87 -5.3 -5.40072 | GTGGGATATCTGCGG TGATC ACCA GATCA TTTTTTTCCACCCGC YPK_1393 1537266 - 1536337 - | coproporphyrinogen oxidase TERM 1571 1536410 - 1536430 + g 76 -9.7 -3.65812 | AACGCGGCTTCTGCA CTATCTGCC TCT GGCTGATAG TTATATTCCCAGCGC TERM 1572 1536732 - 1536706 - G 74 -2.8 -5.04385 | overlap 1536719 CAGATCGTCAAAAAA CAGGCCGCCAAT ACC ACGGGCTTCCTG GCGATGTTTAATATA TERM 1573 1536825 - 1536843 + g 74 -8.9 -3.61715 | GGCTATGCGCTACCT GATGCCA ATGAA TGGCATC TTCTTCAAAGCCGTA YPK_1394 1537549 - 1537974 + | GCN5-related N-acetyltransferase YPK_1395 1538445 - 1538861 + | hypothetical protein TERM 1574 1538935 - 1538908 - T 100 -14.2 -5.53991 | opp_overlap 1538907 TATTGAGCAAAAAAA TGGTCTCCCGCA TTAT CGCGGGAAACCA CTCATCTGGTATGTT YPK_1396 1541232 - 1538953 - | outer membrane autotransporter TERM 1575 1539533 - 1539521 - G 76 -9.1 -3.96216 | CTGTTATCGAAATAA GTGCC GTA GGCAC CCAAGCTATAACTAT TERM 1576 1539844 - 1539869 + g 71 -4 -4.6821 | gap 1, opp_overlap 1539847 1539849 GGATGAGGCCATACT CAACACCG-CA TCCGT TGACGGGGTTG TTTTCTCTTCAGGTT YPK_1397 1542150 - 1541737 - | hypothetical protein YPK_1398 1542513 - 1543124 + | hypothetical protein TERM 1577 1543155 - 1543171 + F 76 -9.4 -3.4758 | TGCTATTATCACTTG GGCGCT ACCTC AGCGCC TTAATATTATTCCTA TERM 1578 1543213 - 1543236 + F 74 -6.8 -4.39386 | CTCTCTCTTCCCGCT TTATTTTGCG TTGT CGCAAGGTAA TTTTAATCGTTTCAG TERM 1579 1544155 - 1544145 - g 71 -8.2 -3.72576 | CTGCGTTTTAGCAAA CCGG TTA CCGG CAGCTATTATTTTGC YPK_1399 1543302 - 1544201 + | Dyp-type peroxidase family protein TERM 1580 1544239 - 1544261 + T 100 -13.5 -4.18044 | AAATATATCACCGTT GGCCGGATT GATGA AATCCGGCC TTTCATTATTTATCA YPK_1400 1545192 - 1544299 - | dihydrodipicolinate synthetase YPK_1401 1545956 - 1545255 - | N-acylglucosamine-6-phosphate 2-epimerase YPK_1402 1546046 - 1546141 + | hypothetical protein TERM 1581 1546175 - 1546219 + T 79 -10.8 -3.17194 | gap 1, overlap 1546177 AGTCTGGCTATAGGT TACCCTGTCCC-CACCACTGA GTTA TCGCTGATGGGGGACAGGGTG TTAACTTACCGAGGT TERM 1582 1546177 - 1546217 + T 79 -11.2 -3.14878 | gap 1, overlap 1546175 TCTGGCTATAGGTTA CCCTGTCCC-CACCACTGA GTTA TCGCTGATGGGGGACAGGG TGTTAACTTACCGAG YPK_1403 1547252 - 1546281 - | hypothetical protein TERM 1583 1547104 - 1547130 + g 73 -3.6 -4.89521 | opp_overlap 1547104, overlap 1547105 TCTACGGCAATACCA CGCTGTTCCC CTTCTCC GGGAACTGCA TTTTCTTTCCACTCT YPK_1404 1547521 - 1548393 + | ROK family protein YPK_1405 1548475 - 1548945 + | hypothetical protein TERM 1584 1548997 - 1549010 + F 100 -9.5 -5.85737 | TTTTTGACCTTTTTA CCCGG TTTT CCGGG TTTTTTTATTGATCT TERM 1585 1549556 - 1549572 + G 73 -3.7 -4.88228 | overlap 1549550 1549556 1549547 1549558 CAAATTGCTGCGTCC TGCGGAT CGC ATCTGTA TTTTTGGTGTTGGCT YPK_1406 1549134 - 1550012 + | RpiR family transcriptional regulator TERM 1586 1550432 - 1550444 + F 76 -7.7 -4.22375 | opp_overlap 1550431 1550432 CTTATACACTCAAAT GGAGT TTT ACTCC TTTATTGAATGCTAT TERM 1587 1550820 - 1550836 + G 73 -8 -3.99405 | TGGCCTGACACTGAT TCAGGC GACCA GCCTGA TTTCTGCTGCCTTCA YPK_1407 1550617 - 1552149 + | major facilitator transporter TERM 1588 1552215 - 1552236 + F 100 -12.3 -5.77856 | gap 1 TAAACTGTTTTTCTT GCCCGGTGCG CGA CG-ACCGGGC TTTTTTTAATTTGTT YPK_1408 1552482 - 1553519 + | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 1589 1554253 - 1554295 + G 100 -12.6 -3.96618 | TGATTACCCGGCAGC CAGCGCCATTGCCTCGGTGA TTC TGGCCGTGTCACTGGCGCTG TTGTTTAGCATTAAC YPK_1409 1553519 - 1554352 + | sulfate ABC transporter, inner membrane subunit TERM 1590 1554583 - 1554595 + G 71 -4.8 -4.63527 | GCATTGATAACCGTG CCAG TGAAC CTGG TTTTTGGGGTGGTGC YPK_1410 1554352 - 1555227 + | sulfate ABC transporter, inner membrane subunit CysW TERM 1591 1555898 - 1555908 + G 73 -2.4 -5.10163 | GAAGTCTGGCGTGAA CCGG CAA CCCG TTTTGTTTTGGAATT YPK_1411 1555217 - 1556308 + | sulfate ABC transporter, ATPase subunit YPK_1412 1556479 - 1557357 + | cysteine synthase B YPK_1413 1557603 - 1558835 + | hypothetical protein YPK_1414 1559923 - 1559216 - | two component transcriptional regulator YPK_1415 1561464 - 1559920 - | integral membrane sensor signal transduction histidine kinase TERM 1592 1561507 - 1561482 - R 93 -11.9 -3.66378 | overlap 1561483 CATATCCCATGTAAA CGCTGAGCCAG CGTA CTGACTCAGCA TAAATGAACTTTTAT TERM 1593 1561506 - 1561483 - R 91 -13.2 -2.79505 | overlap 1561482 ATATCCCATGTAAAC GCTGAGCCAG CGTA CTGACTCAGC ATAAATGAACTTTTA TERM 1594 1561611 - 1561585 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 1561594, overlap 1561586 1561601 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1595 1561612 - 1561586 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 1561594, overlap 1561585 1561601 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_1416 1563115 - 1561697 - | von Willebrand factor type A YPK_1417 1563817 - 1564998 + | aminotransferase class I and II YPK_1418 1565032 - 1566252 + | peptidase M24 YPK_1419 1566395 - 1566592 + | hypothetical protein TERM 1596 1566775 - 1566807 + G 71 -9.1 -3.50393 | overlap 1566777 ACATTCTTGGGGGGC AGTGGCTGGGCTTAT GGA AAAGGCCCAGCCATA TTATATACGCTCACC TERM 1597 1566777 - 1566805 + G 93 -13.9 -3.32698 | overlap 1566775 ATTCTTGGGGGGCAG TGGCTGGGCTTAT GGA AAAGGCCCAGCCA TATTATATACGCTCA YPK_1420 1566589 - 1568049 + | Na+/solute symporter TERM 1598 1569009 - 1569037 + G 74 -11 -2.81584 | gap 1, opp_overlap 1568988, overlap 1569008 GCAACGTATATTCCA CTGGCCTGGCCGG CTAA CCGGCAAGGC-AG ATTATTGGCTGATAT YPK_1421 1568109 - 1569755 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1599 1569788 - 1569775 - T 74 -4.5 -4.83615 | TATTTTGTATAAAAA GGGCA TCTA TACCC AAAATAATTCGCGTT TERM 1600 1569966 - 1569953 - T 86 -6.7 -4.9645 | ATGATAACAATAAAA GGTCA CGGA TGACC TATCACGATGAAAGC YPK_1422 1572046 - 1570010 - | ABC transporter related YPK_1423 1573255 - 1572050 - | RND family efflux transporter MFP subunit TERM 1601 1573685 - 1573651 - g 80 -2.7 -5.41746 | AAGTGCGTAAAAAAA GCCGTTTGCCGATCA TTATG TTAACGGCTAAAGGC GACAATATTGATCGG YPK_1424 1573443 - 1574126 + | two component transcriptional regulator TERM 1602 1574389 - 1574435 + G 74 -11 -2.91239 | opp_overlap 1574389 1574391, overlap 1574382 1574380 GAAGCGGACAAAAAA TATTTTTCTGTCTTACCTGCCG AGA TGGCAGATACGGCAGAAAAAGA TATATCGGCTCTCTC TERM 1603 1574435 - 1574389 - g 100 -10.3 -5.27923 | opp_overlap 1574382 1574380 1574389, overlap 1574391 GAAGCGGACAAAAAA TATTTTTCTGTCTTACCTGCC GAGAT GGCAGATACGGCAGAAAAAGA TATATCGGCTCTCTC TERM 1604 1574433 - 1574391 - g 100 -12.9 -4.26475 | opp_overlap 1574382 1574380 1574389, overlap 1574389 AGCGGACAAAAAATA TTTTTCTGTCTTACCTGCC GAGAT GGCAGATACGGCAGAAAAA GATATATCGGCTCTC YPK_1425 1574152 - 1575501 + | integral membrane sensor signal transduction histidine kinase TERM 1605 1575661 - 1575644 - T 100 -10.5 -4.25104 | opp_overlap 1575644 TGGCCGGCAGCAAAA CGGCGCC CTTG AGCGCCG TTTTTTATCGGTATC TERM 1606 1575644 - 1575661 + T 100 -9.8 -5.29782 | opp_overlap 1575644 TGGCCGGCAGCAAAA CGGCGC CCTTGA GCGCCG TTTTTTATCGGTATC YPK_1426 1576211 - 1575702 - | PTS system, glucose subfamily, IIA subunit TERM 1607 1576129 - 1576163 + g 79 -3.5 -5.34555 | opp_overlap 1576131 TTGACGATTTCACCA GACAGCGGTGCAACT ATCTC AATAACACTGCTGTC TTTTTTATCATCTGA YPK_1427 1577987 - 1576260 - | phosphoenolpyruvate-protein phosphotransferase TERM 1608 1576660 - 1576639 - G 72 -10.3 -3.01712 | opp_overlap 1576644, overlap 1576644 TCGTTTGTCCCAATA CTAAAGAAG TCAA CTTCTTTAG CTAAATGGCGAGCGA TERM 1609 1576921 - 1576932 + g 81 -5.8 -5.00196 | CGAATAGCACGCCAG CCCA GGAA TGGG TTTTCTTCTTTCGGC YPK_1428 1578293 - 1578036 - | phosphotransferase system, phosphocarrier protein HPr TERM 1610 1578737 - 1578772 + r 100 -12 -3.74693 | opp_overlap 1578747, overlap 1578747 AACTTTGATGTACTC CACAAAAAAAGCACCC AGAA GGGTGCTTTTTTTGCA TTTAGTGCGGTAGCC TERM 1611 1578747 - 1578762 + r 100 -10.4 -5.58209 | opp_overlap 1578747, overlap 1578737 TACTCCACAAAAAAA GCACCC AGAA GGGTGC TTTTTTTGCATTTAG TERM 1612 1578762 - 1578747 - R 100 -10.4 -5.626 | opp_overlap 1578747 1578737 TACTCCACAAAAAAA GCACCC AGAA GGGTGC TTTTTTTGCATTTAG YPK_1429 1579760 - 1578792 - | cysteine synthase A TERM 1613 1579551 - 1579569 + g 91 -13.2 -3.41073 | overlap 1579549 AACACCTGTATTCCC GCTGGTTG GTT CAACCAGC TCTTTGCCTGCGGTC TERM 1614 1579905 - 1579887 - R 100 -14.6 -3.97139 | TAATCCCAATAACAA GGGCGTGT TAG ACACGCCC ACCGAAAATGATCAT YPK_1430 1580651 - 1579917 - | hypothetical protein TERM 1615 1581386 - 1581374 - g 71 -4.8 -4.59773 | overlap 1581349 CCGCATGTGGAAAAA CCTG CACAT CAGG TGGCTCCACAACAGC YPK_1431 1580900 - 1581886 + | cell division protein ZipA TERM 1616 1581937 - 1581953 + F 100 -10.8 -5.5762 | opp_overlap 1581932 TCGAATTAACCCGAA CCCCCG CATGC CGGGGG TTTTTTATCTTTGGT TERM 1617 1582761 - 1582779 + G 70 -2.4 -4.91511 | opp_overlap 1582751 TGAAACTCTGCACTG GCAGTGAT CAG GTTATTGC TTTTTATCGTCAAAT YPK_1432 1581977 - 1583989 + | DNA ligase, NAD-dependent YPK_1433 1584009 - 1584224 + | hypothetical protein YPK_1434 1584672 - 1584325 - | hypothetical protein TERM 1618 1584484 - 1584495 + g 73 -2.2 -5.03945 | AATTTGGGTCTCAAT CAGT TGCT GCTG TTTTTGTAATTCTTC YPK_1435 1585409 - 1584804 - | hypothetical protein TERM 1619 1585311 - 1585300 - G 72 -5.8 -4.44245 | opp_overlap 1585307, overlap 1585301 1585302 AGATTACGGACAAAA CCTG CCGC CAGG CACCACTGGTTTAAT TERM 1620 1585574 - 1585592 + r 91 -10.2 -4.10161 | opp_overlap 1585576, overlap 1585576 GCTGTAAAGCAAAAA AACCGGCC AAA GGCCGGTC TTTTAAAGGGTGGTG TERM 1621 1585576 - 1585590 + r 100 -12.8 -3.64716 | opp_overlap 1585576, overlap 1585574 TGTAAAGCAAAAAAA CCGGCC AAA GGCCGG TCTTTTAAAGGGTGG TERM 1622 1585590 - 1585576 - R 100 -12.8 -5.72207 | opp_overlap 1585576 1585574 TGTAAAGCAAAAAAA CCGGCC AAA GGCCGG TCTTTTAAAGGGTGG TERM 1623 1586038 - 1586020 - R 100 -12.4 -5.5762 | ATCAAATATAAAAAA GGCGACCA GAG TGGCCGCC TGATAACACGGAAAA YPK_1437 1587478 - 1586063 - | glutamyl-tRNA synthetase TERM 1624 1588928 - 1588915 - R 84 -3.7 -5.4492 | TATAGATACAAAAAA GGTGC CGTA GCGCC TCCAGACTGCTGACA TERM 1625 1589018 - 1588992 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 1589001, overlap 1588993 1589008 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1626 1589019 - 1588993 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 1589001, overlap 1588992 1589008 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_1438 1590321 - 1589137 - | nucleoside transporter TERM 1627 1590687 - 1590673 - H 90 -5.8 -5.5112 | TCTACTAACAAAAAA GATAAT TCC ATTATC ACAAATGCGCTTGAT TERM 1628 1591540 - 1591550 + G 83 -8.2 -4.56914 | overlap 1591538 GCGATGATGGCAACC GCCG CTG CGGC TTTTCATTTCAATGG YPK_1439 1590772 - 1592001 + | Mn2+/Fe2+ transporter TERM 1629 1592058 - 1592068 + T 71 -6.8 -4.16016 | opp_overlap 1592055 ATTCCATGAAAACCC GCCT GAC AGGC TTTATTGAGCGATGA YPK_1440 1592507 - 1592094 - | hypothetical protein YPK_1441 1593667 - 1592678 - | aldo/keto reductase YPK_1442 1594681 - 1593803 - | LysR family transcriptional regulator TERM 1630 1593859 - 1593870 + g 93 -7.2 -5.40072 | overlap 1593852 GCCAATAGCCAGCAG GCCC CGGT GGGC TTTTTTTCGACCAAA YPK_1443 1594784 - 1595260 + | transmembrane pair domain-containing protein TERM 1631 1595965 - 1595951 - g 73 -7.8 -3.98981 | opp_overlap 1595950 AATAGTGAAGAAGAA GACCAG ATT CTGGCC GTATTGCGCCAGGAG YPK_1444 1595441 - 1596412 + | glucokinase TERM 1632 1596474 - 1596444 - T 84 -9.8 -3.78934 | opp_overlap 1596446 GTGGGCGCAGAAGAA TATCTGCCGGGA GGATAAG TTCCGGCAGATA TGATGCGGAAGAAGG TERM 1633 1596446 - 1596472 + T 75 -10.2 -2.78384 | opp_overlap 1596444 GGGCGCAGAAGAATA TCTGCCGGGA GGATAAG TTCCGGCAGA TATGATGCGGAAGAA YPK_1445 1597737 - 1596490 - | hypothetical protein TERM 1634 1597211 - 1597237 + g 71 -9.4 -3.59293 | opp_overlap 1597211, overlap 1597207 GCATAGGTGACGACA CGGTTAGCATCA AAA TGTTGCTTACCG TTGCTTTCGGTTTGC TERM 1635 1597493 - 1597503 + g 73 -3.2 -4.91429 | CCGAGAATGGCACAA CAGC CGC GTTG TTTTATTTGCGCTTT TERM 1636 1597958 - 1597940 - H 70 -7.4 -3.88787 | overlap 1597930 1597942 GGATATGTTCATAAA CAGACCAT CTG ATGGTCAG CGTCGCTCGGACGGT TERM 1637 1597956 - 1597942 - H 71 -8.6 -3.53174 | overlap 1597940 ATATGTTCATAAACA GACCAT CTG ATGGTC AGCGTCGCTCGGACG TERM 1638 1598444 - 1598469 + G 85 -4.7 -5.40474 | GGTGCGCAAGTGCGT TCAGTGCCGTT GACC GAAGGCATTGA TTTTTTTGGCGAGCT TERM 1639 1598543 - 1598574 + G 93 -7.4 -5.40474 | gap 1, opp_overlap 1598548 ATCCTCGGTTTTCCA TCCAACCCAACAGCG CAA TG-TGTTGAGTTGGA TTTTTTTGAGCGAGT YPK_1446 1598003 - 1599238 + | aminotransferase class I and II YPK_1447 1599502 - 1600026 + | cytochrome B561 YPK_1448 1600552 - 1600121 - | hypothetical protein YPK_1449 1601142 - 1601813 + | curli production assembly/transport component CsgG YPK_1450 1601840 - 1602196 + | putative lipoprotein TERM 1640 1602454 - 1602444 - g 73 -3.2 -4.93288 | overlap 1602431 AACATTTAAACAAAA TGGC ATG ACCA ACGCGGGTGATATTA YPK_1451 1602193 - 1602849 + | hypothetical protein TERM 1641 1603057 - 1603044 - T 71 -6.7 -4.13767 | GGCTGCACCCCAAAA GTTGG ATAC CCAAC TGAATAAGGTGCAGT YPK_1452 1603664 - 1603095 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YPK_1453 1604257 - 1603661 - | cytoplasmic chaperone TorD family protein TERM 1642 1604703 - 1604684 - R 77 -6.4 -4.60487 | overlap 1604687 GATTAGCCGCAAAAA TAGCCGCT AATC AGCGGGTA AATCACCACATGGAA YPK_1454 1605515 - 1604739 - | putative anaerobic dimethyl sulfoxide reductase, C subunit TERM 1643 1604779 - 1604769 - G 71 -4.6 -4.53163 | CCAGAGATTATAAAA GGCA ATC CGCC CGGCTAATTCACCGA YPK_1455 1606134 - 1605517 - | dimethylsulfoxide reductase, chain B YPK_1456 1608572 - 1606146 - | anaerobic dimethyl sulfoxide reductase subunit A TERM 1644 1607103 - 1607079 - G 71 -4.3 -4.75288 | CCAGACCAAAATAAA TTCGCACAATG ACT CATCTTGCAAA ATAGTATTGGTTTTA TERM 1645 1607179 - 1607189 + g 89 -3.2 -5.63012 | CAGAGAAACTTAATA TTGG TAT CCAG TTTTTCTTTATTTTT TERM 1646 1608930 - 1608945 + H 89 -6.2 -5.28481 | overlap 1608942 ATTTACTTCACTTTC TTGAGA AAAG TCTCAA TTTTTTGATTAAATC YPK_1457 1609403 - 1610251 + | hypothetical protein TERM 1647 1610472 - 1610453 - gT 100 -13.6 -4.11346 | opp_overlap 1610449 ACACGTAAATAATAA GGGATGGC GTAG GCCATCCC CGAATAAATTAATAC YPK_1459 1610960 - 1610481 - | Hcp1 family type VI secretion system effector YPK_1458 1610358 - 1610603 + | hypothetical protein TERM 1648 1611139 - 1611164 + FH 79 -10.7 -3.00986 | overlap 1611135 AATTATAATGTTGAG TGTTTTGTTTT TTTT AAAACAAAACA TAATTTAATGTGGTT YPK_1460 1611426 - 1611950 + | hypothetical protein YPK_1461 1613072 - 1612023 - | ABC transporter related YPK_1462 1614655 - 1613069 - | binding-protein-dependent transport systems inner membrane component TERM 1649 1613288 - 1613276 - G 71 -9.1 -3.50737 | overlap 1613272 AGCCAGAAAGACTAA TGCGG CAC CCGCA GCGGCGCCGGGAGCA TERM 1650 1614245 - 1614235 - G 70 -2.4 -4.99035 | overlap 1614236 TCACCGAGATAAAAA CGCC AGC GGCC AGCCCATTCATTGAG TERM 1651 1614307 - 1614297 - G 74 -6.8 -4.386 | opp_overlap 1614301, overlap 1614298 TAACTTTGTACAAAA GCAG GCA CTGC CAGTGGTGCTATTGC TERM 1652 1614698 - 1614684 - R 71 -8.5 -3.53091 | ACTCGGTTTGTTAAA CGCCC GCAGG GGGCG GAGTAAAACGGATTA YPK_1463 1615730 - 1614711 - | extracellular solute-binding protein TERM 1653 1615897 - 1615921 + H 73 -10.1 -3.06133 | opp_overlap 1615901, overlap 1615899 1615901 AATGTTGTGAGGGGA TATAGGGCG GTAAACG CGCCCTATA TTGCGTCAGCCATTG TERM 1654 1616151 - 1616168 + G 79 -3.3 -5.26875 | opp_overlap 1616153, overlap 1616152 1616153 TGCAACCCCGTCAGA TAGCCCT GTTC AGGGCGG TTTTTTACTTGAGCC YPK_1464 1616059 - 1617153 + | lytic murein transglycosylase B YPK_1465 1618395 - 1618997 + | LuxR family transcriptional regulator TERM 1655 1619356 - 1619319 - T 83 -12.2 -2.73994 | opp_overlap 1619322, overlap 1619316 ATTCTTCCAATACGA CCACGTCATGCTAAGT CGGGTT ATTTAGCATGACGTGA TATCGCTCAAAAATT TERM 1656 1619322 - 1619353 + T 88 -12.5 -2.64616 | opp_overlap 1619319 1619316 CTTCCAATACGACCA CGTCATGCTAAGT CGGGTT ATTTAGCATGACG TGATATCGCTCAAAA YPK_1466 1619852 - 1619370 - | hypothetical protein YPK_1467 1621531 - 1619849 - | OmpA/MotB domain-containing protein TERM 1657 1620556 - 1620577 + g 77 -6.5 -4.64334 | overlap 1620541 1620540 1620557 1620571 CGGGGATAGGTTTTA TCACCGGTG TTTT CACCCGTGG TTTTATTGCGGGCTT TERM 1658 1621440 - 1621426 - G 76 -7.2 -4.34912 | opp_overlap 1621425 AAGTAATGAAAATAA CGTTAT TCC ATAACG CATTTCCCTTAAAAT YPK_1468 1622233 - 1621532 - | hypothetical protein YPK_1469 1623567 - 1622230 - | hypothetical protein TERM 1659 1622558 - 1622571 + g 88 -2.4 -5.75342 | opp_overlap 1622558 GATGTGGGAAGATCA GTGA AGAAGC TCAC TTTTTTTTCACCCGC YPK_1470 1624638 - 1623607 - | hypothetical protein TERM 1660 1624431 - 1624443 + g 78 -5.5 -4.85599 | TCACTGCCAAGCCTT GTGGT TGT GCCAC TTTTTCTAGGATAGG YPK_1471 1625838 - 1624645 - | ImpA domain-containing protein TERM 1661 1625091 - 1625111 + g 73 -9.7 -3.29511 | CAATAGGTTCTGGCA CCACGATAG GCG CTATCGGGG TTATCGCGGCATCAA YPK_1472 1626962 - 1625937 - | type VI secretion protein TERM 1662 1626758 - 1626737 - G 85 -12.3 -3.28712 | overlap 1626749 TCCCGTCTTTCATAA CCGCATGAG ATAT CTCACGCGG AGAGAACGTCATGTG TERM 1663 1626773 - 1626818 + g 73 -7.5 -4.26076 | gap 1 GAGAGAACGTCATGT GCGCACTTTGCCCGATGCGGAA GGC TTCCTGTTCAGGCAAGG-GCGC TTTTCCTGGCGCTGG YPK_1473 1628842 - 1626962 - | type VI secretion protein TERM 1664 1631039 - 1631027 - g 71 -9.1 -3.54424 | overlap 1631009 1631010 CGGCACTTTGGTAAA GCGCA GGA TGCGC GTACTGAGCAGTTGA YPK_1474 1629626 - 1632283 + | type VI secretion ATPase TERM 1665 1632450 - 1632419 - f 100 -8.2 -5.52096 | opp_overlap 1632417 1632419 AAAGGCAATAAAAAA TAGCTAATATTGGC ATGA GCGAATATTAACTA TATGTTTAATAAATC YPK_1475 1632494 - 1633039 + | fimbrial protein TERM 1666 1633150 - 1633101 - f 73 -10.1 -2.98493 | gap 1, opp_overlap 1633104 1633107, overlap 1633098 1633104 CGCAGCAGTAAAGCA TAACAG-CTTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAAGTCTGTTA TAAAGATAAGTCTGC TERM 1667 1633104 - 1633147 + F 89 -11.8 -3.31461 | gap 1, opp_overlap 1633104 1633101 1633098, overlap 1633107 AGCAGTAAAGCATAA CAG-CTTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAAGTCTG TTATAAAGATAAGTC TERM 1668 1633107 - 1633143 + F 93 -12.3 -3.17622 | opp_overlap 1633104 1633101 1633098, overlap 1633104 AGTAAAGCATAACAG CTTGCTGCCGAGGCG GATAAAA CGCTGCGGTAGCAAG TCTGTTATAAAGATA YPK_1476 1633196 - 1633957 + | pili assembly chaperone TERM 1669 1636245 - 1636255 + G 77 -8.2 -4.15565 | GCGGGCCCACGACTT GGCG ATG CGCC TTTTGCCATCATCAA YPK_1477 1634085 - 1636757 + | fimbrial biogenesis outer membrane usher protein YPK_1478 1636742 - 1637350 + | fimbrial protein YPK_1479 1637456 - 1637980 + | type VI secretion protein TERM 1670 1638288 - 1638274 - g 71 -8.6 -3.75024 | TTGCACCACCAAGAA TTCCAG TCT CTGGAA AGCGCATGGCGTGGG YPK_1480 1638004 - 1639506 + | EvpB family type VI secretion protein TERM 1671 1639651 - 1639675 + F 70 -9.5 -2.84955 | GCATGGGACCTTTAT TCATTCAGTAT TCA ATATTGAATGA TGTAGTAATGGTTGT TERM 1672 1639992 - 1640002 + G 78 -5.4 -4.8622 | GGTTCAGGTAAAGCC TCTG TTT CAGA TTTTTGCTTCGCACA YPK_1481 1639755 - 1640324 + | Hcp1 family type VI secretion system effector TERM 1673 1640372 - 1640350 - f 100 -13.4 -3.72893 | opp_overlap 1640350 CATGTCGCTATCAAA CTTGCCACCC TTG GGGTGGCAGG TTTTCTTAATAAGTG TERM 1674 1640350 - 1640372 + F 100 -15.6 -4.72497 | opp_overlap 1640350 CATGTCGCTATCAAA CTTGCCACCC TTG GGGTGGCAGG TTTTCTTAATAAGTG YPK_1482 1640577 - 1641137 + | hypothetical protein TERM 1675 1641854 - 1641867 + G 75 -5.3 -4.76041 | AGAAATTGTCGATTA TTTGC TACT GCAAA TTTTTAATAAATATG TERM 1676 1642401 - 1642385 - g 79 -3.6 -5.31456 | opp_overlap 1642390, overlap 1642387 TGAATTGATAAAAAA TGGCCC CTTCT GGGACA AGGTTTCCAATGCTG YPK_1483 1641141 - 1642490 + | type VI secretion protein TERM 1677 1642514 - 1642530 + G 73 -7.2 -4.25104 | AGTGATTTGAACCTT GGGGGC TCAAT GCCTCC TTTTGATCAAAGCAG YPK_1484 1642487 - 1643863 + | type VI secretion system OmpA/MotB family protein TERM 1678 1644071 - 1644081 + G 76 -8.2 -4.05446 | overlap 1644070 TAGGTTTTTGGTACG GCGC ACC GCGC TTTGTCATTGCCGCC TERM 1679 1644272 - 1644258 - g 77 -6.4 -4.58663 | opp_overlap 1644258 AGCATTGGCGAAAAA TCCAGC GTT ACTGGA TAACTTCATTAAGCA TERM 1680 1645636 - 1645601 - g 73 -7 -4.14739 | gap 1, opp_overlap 1645611 TGAGTTATGCCAAAA CGTCCAATGA-GCAGAT CTT ACCTGCGTTATTGAACG CGACACAGCAGTTAC TERM 1681 1646671 - 1646644 - g 82 -5.6 -5.05782 | overlap 1646650 AGCCAGGCTAAAAAA TTACAAGAAACG ATCG CGTTTCGTGAAA ATAAACTGATTAAAG TERM 1682 1646665 - 1646650 - g 70 -7.6 -3.81575 | overlap 1646644 GCTAAAAAATTACAA GAAACG ATCG CGTTTC GTGAAAATAAACTGA TERM 1683 1647000 - 1646989 - g 71 -4.4 -4.69559 | AAATTTGAAAATAAA GTGA TTAC TCAC ACGTCCAAAGCGATT TERM 1684 1647479 - 1647465 - g 73 -10 -3.36492 | opp_overlap 1647463 GGCCCAACGCCAGAA GGCATC CGC GATGCC CGATATTCTTTTTCG YPK_1485 1643872 - 1647699 + | type VI secretion protein IcmF TERM 1685 1650227 - 1650217 - g 73 -8.2 -3.9122 | overlap 1650199 1650194 TACCGCCGGAAACAA CGGC ACC GCCG GAAACCACGGCACCG TERM 1686 1650314 - 1650289 - g 71 -8.9 -3.59202 | overlap 1650271 1650307 1650308 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACCACGGCA TERM 1687 1650317 - 1650307 - g 73 -8.2 -3.9122 | overlap 1650289 1650308 CACCGCCGGAAACAA CGGC ACC GCCG GAAACCACGGCACCG TERM 1688 1650368 - 1650343 - g 71 -8.9 -3.59202 | overlap 1650325 1650322 1650361 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAAACAACGGCA TERM 1689 1650404 - 1650379 - g 78 -8.9 -4.07133 | overlap 1650361 1650397 CACCGCCAGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1690 1650422 - 1650397 - g 76 -8.9 -3.9122 | overlap 1650379 1650415 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAAACAACGGCA TERM 1691 1650443 - 1650433 - g 76 -8.2 -4.07133 | overlap 1650415 CACCGCCAGAAACAA CGGC ACC GCCG GAAACCACGGCACCG TERM 1692 1650494 - 1650469 - g 76 -8.9 -3.9122 | overlap 1650451 1650448 1650487 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1693 1650512 - 1650487 - g 76 -8.9 -3.9122 | overlap 1650469 1650505 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1694 1650530 - 1650505 - g 76 -8.9 -3.9122 | overlap 1650487 1650523 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAAACAACGGCA TERM 1695 1650620 - 1650595 - g 71 -8.9 -3.59202 | overlap 1650577 1650613 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCAGAGACAACGGCA TERM 1696 1650674 - 1650649 - g 71 -8.9 -3.59202 | overlap 1650631 1650667 CACCGCCAGAGACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACAACGGCA TERM 1697 1650692 - 1650667 - g 76 -8.9 -3.9122 | overlap 1650649 1650685 1650686 CACCGCCGGAAACAA CGGCACCGCCG GAAA CAACGGCACCG CCGGAAACCACGGCA TERM 1698 1650695 - 1650685 - g 73 -8.2 -3.9122 | overlap 1650667 1650686 CACCGCCGGAAACAA CGGC ACC GCCG GAAACCACGGCACCG YPK_1486 1648026 - 1650794 + | type VI secretion system Vgr family protein TERM 1699 1650848 - 1650814 - f 89 -11.4 -3.44377 | opp_overlap 1650812 1650810 1650809 1650807, overlap 1650833 ATAGATAAAAGGTAA GCATGTTCTGCGTGGG AAA CACACGTAGAGCATGC GGTCTCTGATTTTTC YPK_1487 1650893 - 1651153 + | hypothetical protein YPK_1488 1651153 - 1652001 + | hypothetical protein YPK_1489 1652021 - 1652827 + | virulence protein SciE type TERM 1700 1652918 - 1652907 - g 88 -2.2 -5.80951 | overlap 1652900 ATGGAAAAGAAAAAA CAGT TTTT ACCG GCGTTGTTAGAGCGT YPK_1490 1652892 - 1653371 + | type VI secretion system lysozyme-related protein YPK_1491 1653396 - 1653743 + | hypothetical protein TERM 1701 1653808 - 1653780 - T 78 -8.9 -3.83921 | opp_overlap 1653780 1653792 TCCAAGATAATAGAA GGGCTCTCTGC TTGGGTG GCAAAGAACCC ATTAATGCATTAGCT YPK_1492 1654159 - 1653818 - | alkylphosphonate utilization operon protein PhnA TERM 1702 1654226 - 1654242 + r 80 -3.7 -5.38326 | GGTTACTGTATTGAT GTGTATA CAT TTTACAC TTTTTATTTAATTAA YPK_1493 1656574 - 1654535 - | hypothetical protein TERM 1703 1655489 - 1655507 + g 73 -2.4 -5.04265 | TTCATCGCGGCTGTT TAAAACCC ATG GGCTTTTG TTTTTACTCTTTTTT YPK_1494 1657121 - 1656579 - | LemA family protein TERM 1704 1657449 - 1657435 - H 74 -7.8 -3.91364 | opp_overlap 1657435 1657432 AAACGGATATAACAA GCCCCT CCT AAGGGC TAGTTACTGGTTCGA TERM 1705 1657932 - 1657950 + G 71 -10.4 -2.83164 | opp_overlap 1657936, overlap 1657936 TGTCGAAGCTTTTAA TGAATGGT ATT ACCATTCA TATGATGATGAGTGG YPK_1495 1657738 - 1658205 + | hypothetical protein TERM 1706 1658679 - 1658693 + GF 73 -5.6 -4.42464 | overlap 1658681 AAATCTGACCTGTAT CCGCGA TGA TCGCTG TTTATTTCAGCAGTT YPK_1496 1658650 - 1659306 + | heme exporter protein CcmA YPK_1497 1659276 - 1659935 + | heme exporter protein CcmB YPK_1498 1659998 - 1660735 + | heme exporter protein CcmC TERM 1707 1660774 - 1660785 + G 75 -5.8 -4.61868 | overlap 1660770 GAATTTTTTGCCATG GGCA ACTA TGCC TTTTATGTCTGGCTC YPK_1499 1660732 - 1661034 + | heme exporter protein CcmD YPK_1500 1661031 - 1661525 + | CcmE/CycJ protein TERM 1708 1662539 - 1662521 - g 73 -8.1 -4.09685 | gap 1 CTGTATGCGGTAAAA GGC-GCGC AGGT GCGCAGCC GGACTCAGCATGAAG TERM 1709 1662582 - 1662596 + G 71 -8.6 -3.62046 | AGACTTTCCTGCTCG GCAACA ATG TGTTGC TTATTGCCGCAATGC YPK_1501 1661522 - 1663492 + | cytochrome c-type biogenesis protein CcmF YPK_1502 1663489 - 1664055 + | periplasmic protein thiol--disulphide oxidoreductase DsbE YPK_1503 1664052 - 1664564 + | cytochrome C biogenesis protein YPK_1504 1664564 - 1665790 + | cytochrome c-type biogenesis protein CcmI TERM 1710 1665800 - 1665783 - f 78 -5.6 -4.88895 | AAATAAATAAACAAA TCCCTT AAGTGA AAGGGA TAGACAGACTTTCAT YPK_1505 1665826 - 1666590 + | VacJ family lipoprotein TERM 1711 1666642 - 1666669 + T 100 -17.2 -3.07113 | opp_overlap 1666642 1666649, overlap 1666644 1666649 CCGCCGTATTCAAAA TAGAAAAGCGCC ATCA GGCGCTTTTCTA TTGGATAAGGTGATG TERM 1712 1666669 - 1666642 - T 100 -17.2 -4.18018 | opp_overlap 1666642 1666644 1666649, overlap 1666649 CCGCCGTATTCAAAA TAGAAAAGCGCC ATCA GGCGCTTTTCTA TTGGATAAGGTGATG TERM 1713 1666644 - 1666667 + T 100 -15.4 -3.09327 | opp_overlap 1666642 1666649, overlap 1666642 1666649 GCCGTATTCAAAATA GAAAAGCGCC ATCA GGCGCTTTTC TATTGGATAAGGTGA TERM 1714 1666662 - 1666649 - T 100 -9.5 -4.90471 | opp_overlap 1666649 1666644 1666642, overlap 1666642 ATTCAAAATAGAAAA GCGCC ATCA GGCGC TTTTCTATTGGATAA TERM 1715 1666649 - 1666662 + T 100 -9.5 -4.68724 | opp_overlap 1666642 1666649, overlap 1666644 1666642 ATTCAAAATAGAAAA GCGCC ATCA GGCGC TTTTCTATTGGATAA YPK_1506 1667962 - 1666697 - | membrane protein involved in aromatic hydrocarbon degradation YPK_1507 1668376 - 1668672 + | hypothetical protein TERM 1716 1668709 - 1668729 + F 100 -12.6 -3.90425 | opp_overlap 1668709 TACATACCTGACCAA CGCGAAGC CTTTT GCTTCGCG TTATTACTTTAGATG TERM 1717 1668729 - 1668709 - f 93 -12.6 -3.18239 | opp_overlap 1668709 TACATACCTGACCAA CGCGAAGC CTTTT GCTTCGCG TTATTACTTTAGATG TERM 1718 1668895 - 1668907 + F 79 -7.7 -4.34559 | TAACAATGTTCGGAT CAGGT CAG ACCTG TTATTTGTTATCTTT TERM 1719 1670036 - 1670007 - g 76 -9.3 -3.85698 | opp_overlap 1670006 1670004 CCTTCGCCGCACAAA CACTGGCTAACCT GAAA ATGTTTGCCAGTG ATACTTTTGCTCGCG YPK_1508 1668959 - 1670269 + | acetyl-CoA C-acyltransferase FadI TERM 1720 1671090 - 1671077 - g 79 -2.4 -5.40072 | overlap 1671089 TTGTCCGTAAAAAAA CGTT AGCTAA AACG CGGGGGCACTACCCG TERM 1721 1671108 - 1671089 - g 71 -6.3 -4.20106 | overlap 1671077 AAACGTTAGCTAAAA CGCGGGG GCACTA CCCGGCG GCTGAACGTATTATT TERM 1722 1671668 - 1671693 + G 74 -11.2 -2.78813 | overlap 1671657 1671667 1671686 1671688 CCATCAGCCAGATTG CTGCTTTGGC GCAACG GCCAGAGCAG GTTATTGGCCTGCAC TERM 1723 1671835 - 1671818 - g 73 -7 -4.21827 | GGAAACAGGGTAAAA CAGCCA TTGTGG TGGCTG ATCGCGCTGGGTTCT YPK_1509 1670269 - 1672593 + | fatty acid oxidation complex, alpha subunit FadJ YPK_1510 1673049 - 1673207 + | hypothetical protein YPK_1511 1673194 - 1673670 + | phosphohistidine phosphatase, SixA TERM 1724 1673739 - 1673758 + T 100 -15 -3.8579 | ATCAACGTCTAACTG GCGCGGCA TTCT TGCCGCGC TTTCGCTTATTGACT YPK_1512 1674533 - 1673922 - | Smr protein/MutS2 YPK_1513 1674822 - 1675754 + | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific YPK_1514 1675831 - 1676916 + | chorismate synthase TERM 1725 1677048 - 1677070 + G 71 -9.1 -3.57462 | GGTGGCTTTGCTAAT GGTTGCGTG ATTGG CGCGCAGCC TTTGCCGCTCGAGTC YPK_1515 1676943 - 1677749 + | peptidase U6 penicillin-insensitive murein endopeptidase TERM 1726 1677837 - 1677867 + G 74 -11.1 -3.04263 | gap 1, overlap 1677834 ATTGATTCCATTGCC G-GCGGGGGCGGCT TGTT AACCGTCCCCGCAC TGTTAGCGGTGGGAT YPK_1516 1677753 - 1678559 + | hypothetical protein TERM 1727 1678605 - 1678633 + F 82 -10.3 -3.66883 | AATTTAGGCACCCAC CACCGCTAAATAC GGT GACTTTAGCGGTG TTTACCCTCTCTTAC TERM 1728 1678781 - 1678794 + G 80 -6.7 -4.77438 | overlap 1678761 CGATGAAGAATCTCC TCACC ATCG GGTGA TTTTTGCTCATGGCT YPK_1517 1678659 - 1679201 + | hypothetical protein YPK_1518 1679259 - 1679537 + | YfcL protein YPK_1519 1681784 - 1679715 - | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC TERM 1729 1680496 - 1680510 + g 75 -5.7 -4.65916 | AGTTCATGTTGGTAG TGGCA GGTCA TGCCA TTTTGTTGCGCTAGC YPK_1520 1681956 - 1683179 + | Beta-ketoacyl synthase TERM 1730 1683219 - 1683250 + T 90 -11.6 -3.62046 | opp_overlap 1683225 GATTCAGATTTACTC CCCAAAGCCTACGA GAGA TCGTAGGCTTGAGG TTATTGACAAAGTGC TERM 1731 1683244 - 1683225 - T 91 -12.2 -3.55761 | opp_overlap 1683219 GATTTACTCCCCAAA GCCTACGA GAGA TCGTAGGC TTGAGGTTATTGACA TERM 1732 1683323 - 1683349 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1683312, overlap 1683318 1683324 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1733 1683324 - 1683350 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1683312, overlap 1683318 1683323 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1734 1683414 - 1683433 + T 100 -12.2 -5.24003 | TGTCAGCAGTCTGAA GCCTACGA GAGA TCGTAGGC TTTTTACTTTTTATT YPK_1521 1684282 - 1683587 - | aspartate racemase TERM 1735 1684356 - 1684317 - H 72 -9.2 -3.14344 | gap 1 GACTGGGGTGAGCAA GGGCAGCTAACTCCCTGCA TCT TGAAGGGCGACAGC-GCCC CCACGTTATAAGTGA YPK_1522 1685070 - 1685600 + | fimbrial protein TERM 1736 1685659 - 1685636 - T 73 -3.8 -5.03747 | opp_overlap 1685636 1685653 1685655, overlap 1685625 AAATTGCTTAAAAAA GCATGTGGAA GATA TTCTGCATGC TTTTTTATATGCTAT TERM 1737 1685636 - 1685659 + T 100 -8.2 -5.40625 | opp_overlap 1685625 1685636, overlap 1685653 1685655 AAATTGCTTAAAAAA GCATGTGGAA GATA TTCTGCATGC TTTTTTATATGCTAT TERM 1738 1685653 - 1685687 + T 82 -3 -5.53288 | opp_overlap 1685636, overlap 1685636 1685655 ATGTGGAAGATATTC TGCATGCTTTTTTATA TGC TATATAAAAGAATGAA TTTTTTTAACTTCCA TERM 1739 1685862 - 1685845 - T 76 -7 -4.56597 | GCGGTTTGTTAAAAA GCGACT GATATT AGTCGC TCAGACTGCTGACAA TERM 1740 1685951 - 1685925 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 1685934, overlap 1685926 1685941 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1741 1685952 - 1685926 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 1685934, overlap 1685925 1685941 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 1742 1686031 - 1686048 + T 100 -7.7 -5.38398 | TGTCAATAACCTCAA GCGACTG ATAT TAGTCGC TTTTTGTATTTTTGT YPK_1523 1687164 - 1686127 - | flagella assembly protein YPK_1524 1688366 - 1687449 - | hypothetical protein YPK_1525 1688565 - 1688437 - | hypothetical protein YPK_1526 1688592 - 1689377 + | AraC family transcriptional regulator YPK_1527 1689424 - 1690551 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 1743 1690613 - 1690591 - f 80 -9.1 -4.0257 | opp_overlap 1690593, overlap 1690584 1690593 CGTAAAAATTAATAA CAGGGCGGT GTGTT ACCGCCCTT GCTGTTCAATAACGT TERM 1744 1690593 - 1690611 + F 95 -12.4 -3.38072 | opp_overlap 1690591 1690584 1690593 TAAAAATTAATAACA GGGCGGTG TGT TACCGCCC TTGCTGTTCAATAAC TERM 1745 1690611 - 1690593 - f 90 -11.7 -3.58785 | opp_overlap 1690593, overlap 1690591 1690584 TAAAAATTAATAACA GGGCGGT GTGTT ACCGCCC TTGCTGTTCAATAAC TERM 1746 1691595 - 1691559 - g 76 -10.7 -3.11459 | opp_overlap 1691559 1691557 AAGATGATTATCCAA CCCAGGTCAGCGACGCC TCC GGCAGCGATGCCCTGAG TATTGGTTGCGTTCG YPK_1528 1690721 - 1691731 + | aspartate-semialdehyde dehydrogenase TERM 1747 1691816 - 1691800 - g 87 -6.5 -5.1356 | opp_overlap 1691800 GCTCAGCAAGAAAAA CCGGC AGAAGTG GCCGG TTTGAAAATTGCGTT TERM 1748 1692567 - 1692588 + G 73 -5.1 -4.58395 | overlap 1692564 CCACTTCGCGTTACC CAAAGTTCC TATG GGGCCTTTG TTTTTGGCGGATGAC YPK_1529 1691731 - 1692612 + | tRNA pseudouridine synthase A YPK_1530 1692769 - 1693431 + | SNARE associated Golgi protein TERM 1749 1693541 - 1693577 + F 78 -2.2 -5.4505 | gap 1, overlap 1693550 1693552 CAATCCAAGTTTCGG TGCCTTAGCCACGTCGC ACTG GCG-TGTATCTCAGGCA TTTTTTATTGGAGAG TERM 1750 1694410 - 1694388 - g 71 -4.9 -4.56775 | gap 2, opp_overlap 1694388, overlap 1694390 ACCGTGCGCGAAAAA CTGCCGCCTGG CTT CCAG-C-GCAG TGAGTTTCTGATTGA YPK_1531 1693662 - 1694576 + | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 1751 1694586 - 1694614 + F 76 -10.4 -2.90804 | gap 1, opp_overlap 1694586, overlap 1694585 GTCTGATTAACTCAA CGGGCATCACTCT TGTA AGA-TGGTGCCCG GTTATTGTGCCTTAT TERM 1752 1694849 - 1694873 + G 95 -13.5 -3.93262 | opp_overlap 1694841 1694836 CATCAAACTCCCCAA GCCACGTCGCC TTT GGCCGCGTGGC TTTGCTATCTTGAGC YPK_1532 1694825 - 1696129 + | FolC bifunctional protein TERM 1753 1696687 - 1696666 - g 82 -5.1 -5.05113 | CCGATAGAAACAAAA CCAGCAG AGAAAAAA CCGCTGG AAGTGAAACCTAAGC TERM 1754 1696744 - 1696732 - g 80 -4.7 -5.06414 | opp_overlap 1696734, overlap 1696733 CCGGTGGAAGAAAAA GCGCC AGT GGGGC AGGCTTATGTTGTCC YPK_1533 1696249 - 1696986 + | phosphogluconate dehydratase TERM 1755 1697505 - 1697515 + G 80 -6.8 -4.71426 | opp_overlap 1697504 TGTTCGCAACGGAAT TGCC ATC GGCA TTTTGTTCATCGCGA YPK_1534 1697314 - 1697823 + | colicin V production protein YPK_1535 1697836 - 1699353 + | amidophosphoribosyltransferase TERM 1756 1699426 - 1699407 - f 76 -10.8 -2.66692 | overlap 1699406 1699409 TATGACGAGTAGAAG TATGACGG GTAT CCGTCATA AAACAGAATGAGCCA TERM 1757 1699474 - 1699445 - f 72 -6.5 -4.24963 | gap 2, opp_overlap 1699445 CAGAATGAGCCAAAA GGTGCAACCTGCG TTTAGG CGC-GG-TGCACC TTTTTATTCATGGTG TERM 1758 1699445 - 1699474 + F 90 -7.2 -5.15167 | gap 2, opp_overlap 1699445 CAGAATGAGCCAAAA GGTGCAACCTGCGT TTAG GCGC-GGT-GCACC TTTTTATTCATGGTG YPK_1536 1699614 - 1700186 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YPK_1537 1700290 - 1700183 - | hypothetical protein TERM 1759 1700372 - 1700401 + H 90 -7.1 -5.18995 | overlap 1700373 ATGCTCCACAATGGA TCCTGCAACAGCG ATGG TGCTGTAGTAGGG TTTTTGTATTCTGTT TERM 1760 1700373 - 1700400 + H 73 -8.4 -3.68957 | overlap 1700372 TGCTCCACAATGGAT CCTGCAACAGCG ATGG TGCTGTAGTAGG GTTTTTGTATTCTGT YPK_1538 1700733 - 1701515 + | cationic amino acid ABC transporter, periplasmic binding protein TERM 1761 1701985 - 1701997 + G 85 -10.5 -4.21922 | opp_overlap 1701982 1701985 TAAAGGGCAAATTGA GGCCG CGA CGGCC TTTGGTTTTACCTCC YPK_1539 1701611 - 1702297 + | polar amino acid ABC transporter, inner membrane subunit TERM 1762 1702562 - 1702580 + G 80 -3.1 -5.42259 | TGGAGATAATCCGAG GCAATGA CCTGC TCAATGC TTTTTTTCGCAGTGG YPK_1540 1702294 - 1703010 + | polar amino acid ABC transporter, inner membrane subunit YPK_1541 1703024 - 1703821 + | ABC transporter related YPK_1542 1704853 - 1703945 - | hypothetical protein TERM 1763 1705073 - 1705061 - H 100 -4.1 -6.47325 | AAAAAATAAAAAAAA GAATC AGG GACTC AATAAACCGCTCAAC YPK_1543 1705207 - 1705899 + | diguanylate phosphodiesterase TERM 1764 1706131 - 1706141 + G 71 -6.8 -4.15543 | overlap 1706121 TGGTTCGTTACCGGC CACG GAA CGTG TTTTGGCGATCTTTG YPK_1544 1706087 - 1706638 + | phosphodiesterase YPK_1545 1706860 - 1707408 + | NUDIX hydrolase TERM 1765 1707432 - 1707456 + T 90 -5.7 -5.56673 | opp_overlap 1707432 TGCTCAATAAAAAAA CCAAAGCCC CGCTAAA GCGCTTTGG TTTTTTATTATCAGT TERM 1766 1707456 - 1707432 - T 100 -6.4 -5.7946 | opp_overlap 1707432 TGCTCAATAAAAAAA CCAAAGCCCC GCTAA AGCGCTTTGG TTTTTTATTATCAGT TERM 1767 1707494 - 1707477 - T 100 -12.7 -3.62572 | TATTATCAGTTTAAA CCCCCTC CAAG GAGGGGG TGATGGTGACGTCTT YPK_1546 1708781 - 1707525 - | putative sugar-specific permease SgaT/UlaA YPK_1547 1709081 - 1708794 - | phosphotransferase system lactose/cellobiose-specific IIB subunit YPK_1548 1709693 - 1709250 - | putative PTS IIA-like nitrogen-regulatory protein PtsN TERM 1768 1709768 - 1709800 + H 77 -8.5 -3.96624 | opp_overlap 1709774, overlap 1709769 1709784 TGTGATCTGGATCTC AATTGATAGCGCTAT CTG GTAGCGCTATCAAAA TTTGTGATAGCGCTA TERM 1769 1709769 - 1709799 + H 86 -12 -2.97653 | opp_overlap 1709774, overlap 1709768 1709784 GTGATCTGGATCTCA ATTGATAGCGCTAT CTG GTAGCGCTATCAAA ATTTGTGATAGCGCT TERM 1770 1709794 - 1709774 - H 70 -9.8 -2.53876 | opp_overlap 1709769 1709768 1709784 CTGGATCTCAATTGA TAGCGCTA TCTGG TAGCGCTA TCAAAATTTGTGATA TERM 1771 1709784 - 1709818 + H 100 -15.2 -3.9712 | opp_overlap 1709774, overlap 1709769 1709768 ATTGATAGCGCTATC TGGTAGCGCTATCAAA ATT TGTGATAGCGCTATCA TTTGTCATGCCATGA TERM 1772 1710735 - 1710716 - g 83 -6.4 -4.93296 | overlap 1710727 CGAGCATTACAAAAA TGCTGACC AAAC GGTCACCA CGCCCGATGCGGCCA YPK_1549 1710060 - 1711094 + | LacI family transcription regulator TERM 1773 1711125 - 1711104 - T 100 -12.3 -4.50358 | gap 1, opp_overlap 1711099 1711118 ACCTAAAGAGGAAAA CCG-CCCGCA GAA TGCGGGGCGG CTCCCTGTTTTACGT TERM 1774 1711183 - 1711152 - T 79 -10.9 -3.05463 | opp_overlap 1711158, overlap 1711158 ACGTGTCTGATGTAA CAAAAACGCCAGC GCAGAG GCTGGCGTTTCAG ACTGCTGACAAACCC TERM 1775 1711158 - 1711177 + T 84 -10.7 -3.58343 | opp_overlap 1711152 1711158 CTGATGTAACAAAAA CGCCAGC GCAGAG GCTGGCG TTTCAGACTGCTGAC TERM 1776 1711177 - 1711158 - T 100 -10.7 -5.10461 | opp_overlap 1711158, overlap 1711152 CTGATGTAACAAAAA CGCCAGC GCAGAG GCTGGCG TTTCAGACTGCTGAC TERM 1777 1711268 - 1711242 - T 84 -10.1 -3.74872 | gap 1, opp_overlap 1711251, overlap 1711243 1711258 AGGCAGGGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 1778 1711269 - 1711243 - T 72 -10.1 -2.84602 | gap 1, opp_overlap 1711251, overlap 1711242 1711258 GGCAGGGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_1550 1713514 - 1711361 - | phosphate acetyltransferase YPK_1551 1714884 - 1713682 - | acetate kinase TERM 1779 1715420 - 1715439 + G 78 -7.8 -4.37534 | opp_overlap 1715419 1715420 GTGTTCCCCGAGAAT CGTGTCAC GGTA GTGACCCG TTTTGGTATCCGTTT YPK_1552 1715306 - 1715761 + | hypothetical protein YPK_1553 1716069 - 1716563 + | YfbU family protein YPK_1554 1716729 - 1717385 + | HAD family hydrolase TERM 1780 1717449 - 1717465 + F 100 -9.4 -5.42131 | opp_overlap 1717448 ATAAGCCAATAGTAG GGTGCC TCGAC GGCACC TTTTTTGTATCGTTA YPK_1555 1717677 - 1719509 + | citrate transporter TERM 1781 1719566 - 1719581 + F 75 -10.4 -2.75826 | overlap 1719563 CTGTCTTCGTTACTT GGCCCA TCCG TGGGCC TCGTCTCTTACCGTA TERM 1782 1719734 - 1719723 - f 75 -3 -5.14626 | ATTATCAAAATAAAA CTAA TTAT TTAG CACTGAAACTTAATC TERM 1783 1719783 - 1719801 + F 72 -7.6 -3.89235 | opp_overlap 1719781 1719783 TAGAATAGATAAACA TGAAATAA TAT TTATTTCA TTAGTTTTGTTTGAT TERM 1784 1719801 - 1719783 - f 70 -7.6 -3.71649 | opp_overlap 1719783, overlap 1719781 TAGAATAGATAAACA TGAAATAA TAT TTATTTCA TTAGTTTTGTTTGAT TERM 1785 1719885 - 1719903 + F 95 -2.5 -6.09888 | ATATTTACACTGATA TTTGCAT TTTTT ATGTAAA TTTTTTTTATTAAAA TERM 1786 1720012 - 1720022 + G 71 -6.8 -4.15222 | ATGTTCATGCGATGA CTGC TGA GCAG TTTCTTGCCGAAAAT YPK_1556 1719933 - 1720175 + | hypothetical protein TERM 1787 1720219 - 1720192 - T 100 -15.8 -3.28924 | TATCTCTTGTCATAA TTTATAGCCTGC ACAA GCAGGCTATAAA GATCAATCCAGTGAA YPK_1557 1720815 - 1720222 - | metal dependent phosphohydrolase YPK_1558 1722180 - 1720966 - | aminotransferase class I and II TERM 1788 1721306 - 1721318 + g 79 -10.5 -3.6608 | CTAATGCTCTGATAG CCGCC CAA GGCGG TTTGAATCGCATGCT TERM 1789 1721777 - 1721815 + g 76 -11.6 -2.83403 | opp_overlap 1721777, overlap 1721776 CTTGAGAGCGACACA GCTGCTGTCCACAGCGGG TAA TCCGGTGCGGGCACCAGC ATTTCATCACCCAAA TERM 1790 1721815 - 1721777 - G 74 -10.9 -2.93382 | opp_overlap 1721777 1721776 CTTGAGAGCGACACA GCTGCTGTCCACAGCGG GTAAT CCGGTGCGGGCACCAGC ATTTCATCACCCAAA YPK_1559 1723035 - 1723967 + | LysR family transcriptional regulator TERM 1791 1723996 - 1724015 + F 100 -7.2 -6.32017 | gap 1, opp_overlap 1723996 AATTCATCATCACAA GCCCCTGTA TTT TA-AGGGGC TTTTTTTTATTTATT TERM 1792 1724306 - 1724282 - f 78 -2.2 -5.52384 | gap 1, overlap 1724284 CCTGGATCAAAAAAA TACTGTCCACT ACTG AGTGGA-AGAA CAGGATATTCCTGAG TERM 1793 1724319 - 1724307 - f 70 -7.7 -3.65522 | TACTGAGTGGAAGAA CAGGA TAT TCCTG AGACAATGGTATAGT TERM 1794 1724463 - 1724484 + F 74 -10.3 -2.57211 | overlap 1724462 ATTAATGTGTAGTTA CTTTTGTCA AAGT TGACAAAAG GTTATCGAAAGGAGT YPK_1560 1724645 - 1725145 + | NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YPK_1561 1725247 - 1725924 + | NADH-quinone oxidoreductase, B subunit TERM 1795 1726164 - 1726174 + G 77 -8.2 -4.30719 | TGTCGAACCGTTTTG GGCC TGA GGCC TTTGTTGTGCAAGCA YPK_1562 1726067 - 1727863 + | NADH dehydrogenase I, D subunit YPK_1563 1727866 - 1728429 + | NADH-quinone oxidoreductase, E subunit TERM 1796 1728555 - 1728545 - g 88 -8.2 -4.7373 | GTATCGCAGCAAAAA CGGC TAT GCCG GGGCAGAAAAAGCGT YPK_1564 1728426 - 1729811 + | NADH-quinone oxidoreductase, F subunit TERM 1797 1731774 - 1731784 + G 71 -8.2 -3.67173 | opp_overlap 1731766, overlap 1731763 TCAATCAGGAAGGCC GCGC ACA GCGC TTCTTCCAGGTTTAT YPK_1565 1729898 - 1732642 + | NADH-quinone oxidoreductase, chain G YPK_1566 1732639 - 1733616 + | NADH dehydrogenase (quinone) YPK_1567 1733631 - 1734173 + | NADH-quinone oxidoreductase, chain I YPK_1568 1734186 - 1734731 + | NADH dehydrogenase (quinone) YPK_1569 1734728 - 1735030 + | NADH-ubiquinone oxidoreductase chain 4L TERM 1798 1735971 - 1735992 + G 70 -8.1 -3.87815 | gap 1 ATTGGCGTACTCCAC CATG-AGCCA GAT TGGCTACATG TTTCTGGCGCTGGGC YPK_1570 1735027 - 1736871 + | proton-translocating NADH-quinone oxidoreductase, chain L TERM 1799 1737119 - 1737131 + G 71 -9.1 -3.61536 | CATATTATAATGTGC CGTGG ATC CCACG TTTCGGCATTAGATT TERM 1800 1737665 - 1737694 + G 75 -7.7 -4.25104 | opp_overlap 1737656, overlap 1737657 1737666 1737688 CACACAGCCAGGCAC CTACCGCCGGGTC TGTT GACCTGGCGGGGA TTTTGCTGAAGACCG TERM 1801 1737666 - 1737693 + G 76 -11.2 -3.14848 | opp_overlap 1737656, overlap 1737657 1737665 1737688 ACACAGCCAGGCACC TACCGCCGGGTC TGTT GACCTGGCGGGG ATTTTGCTGAAGACC YPK_1571 1736911 - 1738443 + | proton-translocating NADH-quinone oxidoreductase, chain M TERM 1802 1738483 - 1738516 + G 71 -8.9 -3.45849 | CAACTGATCGCAATG CTACCGCTGTTGATC GTCG GATTGACGGTGGTGG TTGTGATGCTGTCCA YPK_1572 1738450 - 1739913 + | proton-translocating NADH-quinone oxidoreductase, chain N TERM 1803 1739960 - 1739987 + F 100 -14.2 -5.23292 | opp_overlap 1739955 TCGAGATAGACCCTA CCCCCTGTGAGT ATCG GCTTACAGGGGG TTTTGTTTTATCTGG YPK_1573 1740149 - 1741228 + | hypothetical protein YPK_1574 1742167 - 1741700 - | hypothetical protein YPK_1575 1742781 - 1742245 - | carbohydrate kinase TERM 1804 1742633 - 1742645 + g 100 -9.1 -5.1615 | overlap 1742631 TGATCGTTCAGTGGC TGGCC GGC GGCCA TTTTTTGGATATTGG YPK_1576 1743699 - 1742830 - | short-chain dehydrogenase/reductase SDR TERM 1805 1743707 - 1743733 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 1743696, overlap 1743702 1743708 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1806 1743708 - 1743734 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 1743696, overlap 1743702 1743707 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPK_1577 1745636 - 1744353 - | hypothetical protein TERM 1807 1745969 - 1745950 - H 80 -10.6 -3.5511 | overlap 1745948 TGCCATTGAGAAATA CGGGCGGG CATC CCCTCCCG ACGGTGTAACTGCCG YPK_1578 1746105 - 1747097 + | LacI family transcription regulator TERM 1808 1747101 - 1747129 + F 73 -5.3 -4.72272 | opp_overlap 1747106, overlap 1747106 GGGACTATCTGAGAC TAAAGGGAAGTCG ATT CGGTTTCCTGTTA TTTTTCATCACCACG TERM 1809 1747106 - 1747124 + F 70 -7.4 -3.84027 | opp_overlap 1747106, overlap 1747101 TATCTGAGACTAAAG GGAAGTCG ATT CGGTTTCC TGTTATTTTTCATCA TERM 1810 1747211 - 1747194 - f 72 -9.9 -2.77899 | TCGGCTCATCAATTA TCACCTG TTAA CAGGTGA CGCCAACGTATAACA TERM 1811 1747327 - 1747344 + F 80 -2.7 -5.44721 | overlap 1747330 CAATGATAAGCTGGT CACGTTA CCGG TAACATG TTTTTTTAACATGGT YPK_1579 1747561 - 1748511 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 1812 1748521 - 1748534 + F 70 -5.3 -4.50058 | opp_overlap 1748521 TATTAATAGAATCAA TCACT CTTT AGTGA TTTTAGTTATCCATG TERM 1813 1748587 - 1748558 - f 76 -10.8 -2.50195 | overlap 1748557 1748555 ATCCATGAGTAATAG CGCGTCAGAAAA TAAAGT TTATCTGACGCG TCAATCGAAAATTAT TERM 1814 1749697 - 1749735 + G 90 -10.3 -4.40333 | gap 1, overlap 1749699 TGGCATCCGTCGGTA TTCTGGCGGTGCT-GCCA TTTG TGGCTACCACCGCCGGTA TTTATGTTATTTCCG TERM 1815 1749699 - 1749733 + G 93 -12.9 -3.79177 | gap 1, overlap 1749697 GCATCCGTCGGTATT CTGGCGGTGCT-GCCA TTTG TGGCTACCACCGCCGG TATTTATGTTATTTC YPK_1580 1748874 - 1750190 + | major facilitator transporter YPK_1581 1750220 - 1750735 + | hypothetical protein TERM 1816 1752015 - 1752027 + G 73 -3.3 -4.91109 | CGACGGTGATCGCCA GTCTG GAA CAGCC TTTTTCTGCTCAGGG TERM 1817 1752106 - 1752090 - g 72 -5.7 -4.4078 | GGGCGGTAATGAAAA CCTCGGC AGT GCCACGG GAGCATCAGGTTATT YPK_1582 1750745 - 1752601 + | 6-phosphogluconate dehydratase YPK_1584 1752963 - 1752820 - | hypothetical protein YPK_1583 1752739 - 1752879 + | hypothetical protein YPK_1585 1753531 - 1753839 + | protein of unknown function DUF883 ElaB YPK_1586 1754394 - 1755038 + | protein RhiA YPK_1587 1755291 - 1755386 + | hypothetical protein TERM 1818 1756833 - 1756799 - g 74 -9.2 -3.6502 | TATTTGTCACTTAAA CGCACTGAATTCAGTG TGG CCCTGCGTTCAGCGCG AGTCGATGGGCAGCA YPK_1588 1755611 - 1756978 + | isochorismate synthase YPK_1589 1757206 - 1758909 + | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 1819 1759661 - 1759676 + G 74 -4 -4.84359 | gap 1, overlap 1759648 TCCCGGTGCTTTTGC TGCACAG GTG CTG-GCA TTTTTGTCACAGTCA YPK_1590 1758906 - 1759724 + | alpha/beta hydrolase fold TERM 1820 1760298 - 1760275 - g 76 -2.3 -5.24129 | GTCGGCCAGAAAAAA GCGCGGGAA ATTTGG TTCCTGTGC CGCCAATATGATGCC YPK_1591 1759738 - 1760595 + | naphthoate synthase YPK_1592 1760595 - 1761566 + | mandelate racemase/muconate lactonizing protein TERM 1821 1762710 - 1762722 + G 73 -3.3 -4.93661 | TATTGCAGTATTCAG GGGTG CAG CACGC TTTTGTTATTCCTGT YPK_1593 1761554 - 1762969 + | O-succinylbenzoate-CoA ligase YPK_1594 1763035 - 1763994 + | glycosyl transferase family protein TERM 1822 1764042 - 1764020 - T 100 -9.1 -4.93296 | TCACCACCAGAAAAA GCCCATCAG ATGAA CGGATGGGC TGAGGTTATTGACAA TERM 1823 1764120 - 1764146 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 1764109, overlap 1764115 1764121 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 1824 1764121 - 1764147 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 1764109, overlap 1764115 1764120 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 1825 1764210 - 1764232 + T 100 -9.1 -4.78848 | TTGTCAGCAGTCTGA GCCCATCAG ATGAA CGGATGGGC TTTTGTATTTCCAAG YPK_1595 1764636 - 1764376 - | hypothetical protein TERM 1826 1765017 - 1765003 - g 91 -4.2 -5.63517 | overlap 1765005 TCCCCAAAGAAAAAA GCGGAT TGC ATCCCC GAAACCGTCATCGCT YPK_1596 1764969 - 1765934 + | hypothetical protein TERM 1827 1767832 - 1767820 - g 74 -6.3 -4.39989 | opp_overlap 1767820 AGCAAATGACTAAAA CCATT CAG AATGG TGTTACCGCCGCGAT TERM 1828 1767948 - 1767967 + G 70 -2.1 -4.85599 | GTGGGGATGCAAGAT GTGGTGA AATTAA TGACCAC TTTTTCTCAGGTAAA YPK_1597 1766700 - 1768004 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 1829 1768153 - 1768125 - T 100 -8.8 -5.26918 | opp_overlap 1768120 1768125 ATAGCCTATAAAAAA CTGGCGGGTATC AGTAA GATGTCCGCCAG TGTGATTTCTAGCCA TERM 1830 1768125 - 1768153 + T 95 -13.2 -3.05997 | opp_overlap 1768125, overlap 1768120 ATAGCCTATAAAAAA CTGGCGGGTATC AGTAA GATGTCCGCCAG TGTGATTTCTAGCCA YPK_1598 1768954 - 1768232 - | ABC transporter related TERM 1831 1768632 - 1768642 + g 77 -6.8 -4.63218 | overlap 1768631 GCCTCTTCCTTGGAT GTGC CAC GCAC TTTTGTTGGGCCAAA YPK_1599 1769607 - 1768951 - | polar amino acid ABC transporter, inner membrane subunit YPK_1600 1770385 - 1769642 - | cationic amino acid ABC transporter, periplasmic binding protein TERM 1832 1770627 - 1770617 - R 76 -2.6 -5.27399 | CAACATACTAAAAAA TAAA AGA TTTA CCCCAATCACTTAGC YPK_1601 1772081 - 1770954 - | hypothetical protein TERM 1833 1771456 - 1771486 + g 84 -13.4 -2.65354 | opp_overlap 1771453, overlap 1771453 1771452 1771461 GGATTTAACGCATAG CCCAAGGTGACAAT CGC ATTTTCGCCTTGGG TCGCTTTCAACTGCG TERM 1834 1772350 - 1772366 + r 79 -10.8 -3.04792 | opp_overlap 1772350 GGAGGGCGGCAAGCA GGGCCG GTTAA CGGCCC TGTTCAGCGTAATAG TERM 1835 1772366 - 1772350 - R 76 -10.8 -2.71364 | opp_overlap 1772350 GGAGGGCGGCAAGCA GGGCCG GTTAA CGGCCC TGTTCAGCGTAATAG YPK_1602 1772904 - 1772401 - | Ferritin Dps family protein YPK_1603 1773937 - 1773161 - | trans-aconitate 2-methyltransferase TERM 1836 1773319 - 1773309 - G 71 -8.2 -3.65991 | overlap 1773310 AGGGGGGCAAGATAA GGGC GTA GCCC CGTTGCCCGCAGCCA YPK_1604 1774457 - 1773960 - | GCN5-related N-acetyltransferase YPK_1605 1775360 - 1774473 - | hypothetical protein TERM 1837 1774720 - 1774709 - G 75 -5.8 -4.57755 | ATGCAGTAGACAAAA TGGC GACG GCCA GTGCAATGGGCAAGA TERM 1838 1775057 - 1775074 + g 77 -6.9 -4.57837 | ATTCCAGTGCTACAG CGATGCC TAAT GGCACCG TTTTTAACGACATGT YPK_1606 1775765 - 1776289 + | virulence-related outer membrane protein TERM 1839 1776350 - 1776365 + F 100 -9 -5.82316 | opp_overlap 1776350 1776349 TGTGTCTGATAAAAG TCCGCT TTCG AGCGGA TTTTTTTTGCCTGCT YPK_1607 1776605 - 1777543 + | cation diffusion facilitator family transporter TERM 1840 1777530 - 1777561 + F 89 -6.6 -5.38321 | CCTTTACGCGTGATG CCAAGTGGTTGTAG CTGG CCATAGCCATTTGG TTTTTTATCGTGTTT TERM 1841 1777584 - 1777607 + F 100 -11 -4.81083 | TCGTGTTTTTATCAT CCCCCAGC CGTGATTT GCTGGGGG TTTTTAATGGTTACC YPK_1608 1777781 - 1778323 + | hypothetical protein YPK_1609 1778517 - 1779179 + | hypothetical protein TERM 1842 1779475 - 1779485 + F 86 -6.8 -4.98672 | overlap 1779482 TTTTCTATTTTTCAC CGTC ACC GACG TTTTGTCTTTTTGAA TERM 1843 1779964 - 1779954 - g 73 -5.4 -4.57569 | overlap 1779957 TGATTTGTTCAAAAA TGAC AAC GTCA ACATTGTATCCATAC YPK_1610 1779850 - 1781076 + | alcohol dehydrogenase YPK_1611 1781251 - 1782168 + | monosaccharide-transporting ATPase YPK_1612 1782225 - 1783715 + | ABC transporter related YPK_1613 1783712 - 1784704 + | monosaccharide-transporting ATPase YPK_1614 1785858 - 1784854 - | LacI family transcription regulator TERM 1844 1786117 - 1786131 + r 74 -4.2 -5.08088 | TGGGTGTTTTTACCT CTCAAG CGT CCTGAG TTTTTATTCCACGTT YPK_1615 1787170 - 1786229 - | LysR family transcriptional regulator YPK_1616 1787273 - 1788358 + | tartrate dehydrogenase TERM 1845 1788483 - 1788457 - f 84 -10.1 -3.82218 | gap 1, overlap 1788458 1788473 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTAACATGGAT TERM 1846 1788484 - 1788458 - f 72 -10.1 -2.88849 | gap 1, overlap 1788457 1788473 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTAACATGGATG YPK_1617 1788497 - 1788610 + | hypothetical protein TERM 1847 1788591 - 1788625 + F 78 -10 -3.45031 | overlap 1788588 1788593 CTGCGTTGGCGGGTT TGGGTATGCGTCCGTT TTA ATCGGACGAATGCCTA TTAACTTTTTGAGAA TERM 1848 1788593 - 1788623 + F 78 -10.4 -3.2916 | overlap 1788591 1788588 GCGTTGGCGGGTTTG GGTATGCGTCCGTT TTA ATCGGACGAATGCC TATTAACTTTTTGAG TERM 1849 1789356 - 1789346 - g 71 -4.6 -4.57837 | ATATTGCGCCAAAAA CGCC GAA GGCA CTGGAATACAGCGTC TERM 1850 1790391 - 1790411 + G 83 -2.4 -5.57396 | overlap 1790395 TACCATGAAAACGAC GGTTGTGC TCACT GCGCTGCC TTTTTTATTGATTCT YPK_1618 1788976 - 1790622 + | cyclic nucleotide-binding protein YPK_1619 1790739 - 1791863 + | Rieske (2Fe-2S) domain-containing protein TERM 1851 1791875 - 1791899 + F 100 -14.3 -3.54951 | GTAGCCTATTATTAT GGCCCACAGTG AGC CGCTGTGGGTC TTCTCTGATAGCGTA TERM 1852 1792182 - 1792158 - g 100 -16.5 -3.53091 | ATTCTCCTTTTGAAA CGCACCGCTAC CAA ATAGCGGTGCG CCTGAGTGAGCATTC TERM 1853 1792585 - 1792570 - g 79 -10.4 -3.69395 | GGTATCATTGAATAA CGCCGT TAAA ACGGCG GCAACACAACGCGGT YPK_1620 1791959 - 1792924 + | ferredoxin YPK_1621 1793572 - 1795260 + | polypeptide-transport-associated domain-containing protein TERM 1854 1796246 - 1796232 - g 74 -9.2 -3.69092 | AACATTAACGCCAAA GCCGCC GAT GGCAGC CCGCGGCCAACCGTG TERM 1855 1800404 - 1800389 - g 71 -4.6 -4.59773 | TCTGACCGGTAAAAA CGTCAG TATT CTGGCG GCGGAGAATCAGCTT TERM 1856 1800931 - 1800889 - g 85 -4.7 -5.47431 | gap 1, opp_overlap 1800902 CCAACACACAAAAAA CCGACGGCAGCAACAGCAGC AGTG GCGGCAGT-GTTGGCGTCAG TCTGGGCATCAGTGG TERM 1857 1801708 - 1801673 - g 74 -9.2 -3.66018 | gap 1 GGAGCATGCCAACAA TGCCCTTTC-CCCTATC TTT GATAAAGAGAAAGAGCA AAACCGGCTGAAGGA YPK_1622 1795416 - 1803053 + | filamentous haemagglutinin outer membrane protein YPK_1623 1803050 - 1803364 + | hypothetical protein TERM 1858 1803378 - 1803401 + F 76 -11 -2.64472 | overlap 1803381 GATCCCTGGTTCTTC TAACCCCGGT TTTA GCCGGGGTTG TCGCTTTAAGCCCTA TERM 1859 1803381 - 1803398 + F 80 -10.5 -3.47349 | overlap 1803378 CCCTGGTTCTTCTAA CCCCGGT TTTA GCCGGGG TTGTCGCTTTAAGCC YPK_1624 1803665 - 1803931 + | transposase IS3/IS911 family protein TERM 1860 1805024 - 1805012 - g 78 -9.1 -4.10566 | AGAGCATTACAGAAA CACGG CAG CCGTG AAGGAAGTGTCTATC YPK_1625 1804172 - 1805227 + | hypothetical protein YPK_1626 1805230 - 1805451 + | hypothetical protein TERM 1861 1805481 - 1805457 - T 83 -12.2 -2.78495 | opp_overlap 1805457, overlap 1805454 1805452 1805459 GGATCAGTAACATTA TATCCCGGCC AATCG AGCCGGGATA TTTTTACCTGCCTAT TERM 1862 1805457 - 1805481 + T 100 -11.5 -4.67755 | opp_overlap 1805457 1805454 1805452 1805459 GGATCAGTAACATTA TATCCCGGC CAATCGA GCCGGGATA TTTTTACCTGCCTAT TERM 1863 1805479 - 1805459 - T 76 -10.4 -2.93616 | opp_overlap 1805457, overlap 1805457 1805454 1805452 ATCAGTAACATTATA TCCCGGCC AATCG AGCCGGGA TATTTTTACCTGCCT YPK_1627 1805651 - 1805496 - | hypothetical protein YPK_1628 1806124 - 1805723 - | XRE family transcriptional regulator TERM 1864 1805961 - 1805974 + g 79 -9.5 -3.86194 | ACCGTATCTAGGTGA GGCGC AGTA GCGCC TTTCTCCCAGCGGTT YPK_1629 1806243 - 1806662 + | hypothetical protein YPK_1630 1806703 - 1807233 + | hypothetical protein YPK_1631 1808577 - 1807498 - | ABC transporter related TERM 1865 1808604 - 1808637 + r 100 -14.7 -4.93177 | overlap 1808608 ACAATATGCTGCTAT TTACCCTCGCGTTCA ATAA TGAACGCGAGGTTGA TTTTATTAGTTTTTA TERM 1866 1808608 - 1808633 + r 100 -17.7 -3.84772 | overlap 1808604 TATGCTGCTATTTAC CCTCGCGTTCA ATAA TGAACGCGAGG TTGATTTTATTAGTT YPK_1632 1810065 - 1808677 - | phosphomannomutase YPK_1633 1811122 - 1810082 - | LacI family transcription regulator TERM 1867 1811307 - 1811281 - H 70 -3.7 -4.79451 | opp_overlap 1811286 1811287 1811289, overlap 1811282 1811289 ACGTTAAACATAAAA TGATGAGATGT GAAAT ACTTCACATCA TTATCGAAATTACGC YPK_1634 1811394 - 1812680 + | extracellular solute-binding protein TERM 1868 1812849 - 1812877 + G 70 -2.5 -4.90778 | gap 1, opp_overlap 1812856, overlap 1812856 GCGGCCTCTTATCTG GGAT-ATACCAG CATATT CTGGTTTTATCC TTTTATTTGGCTCGC TERM 1869 1812856 - 1812869 + G 71 -3.8 -4.71401 | opp_overlap 1812856, overlap 1812849 CTTATCTGGGATATA CCAG CATATT CTGG TTTTATCCTTTTATT YPK_1635 1812789 - 1813664 + | binding-protein-dependent transport systems inner membrane component YPK_1636 1813665 - 1814489 + | binding-protein-dependent transport systems inner membrane component TERM 1870 1814608 - 1814587 - f 83 -8.7 -4.16943 | opp_overlap 1814586 1814587 TTTGATACTCGAAAA CGCGGTGAA ATGA CTCACCACG ATATTGCTATTTATA YPK_1637 1814636 - 1815691 + | glycosidase PH1107-related YPK_1638 1815718 - 1816656 + | hypothetical protein TERM 1871 1816719 - 1816704 - f 76 -2.6 -5.38047 | overlap 1816705 1816712 GATTTATAGAAAAAA CCTAAT ATCA ATTAGA TTGGGTGGAGTTCCC TERM 1872 1817135 - 1817146 + G 75 -3.6 -5.14563 | TTTTGGCGATACGGG CTGG AATA CCGG TTTTTTACTCAAGCA TERM 1873 1817332 - 1817318 - g 91 -4.2 -5.52986 | overlap 1817319 AGGCTACGAAAAAAA CCGC ACGACAG GCGG CGATAACAATATTGG TERM 1874 1817518 - 1817501 - g 71 -8.5 -3.75332 | opp_overlap 1817504 ACTTGTTAATGTAAA TTATCGG GTCG CCGATAA TGTGCACGCCGGTAT YPK_1639 1816779 - 1817894 + | hypothetical protein TERM 1875 1818141 - 1818158 + G 79 -3.3 -5.252 | overlap 1818142 TATCCGCCATTGATG ATGTCGC CCGC GCGGCAA TTTTTTATCAACGTC TERM 1876 1818334 - 1818312 - g 75 -6.2 -4.59207 | opp_overlap 1818316 ATAAAGAGTATAAAA CCAGTGTGGC GGA GCCAAATTGG TGGACATGGCGTGCA YPK_1640 1817933 - 1819207 + | hypothetical protein TERM 1877 1819237 - 1819272 + T 86 -12 -3.14132 | opp_overlap 1819230 TGTAAATAGTAGCCC CGGTGCTCTGAATTAT TTTT ATATTTCAGAGCACCA TTAGTACACCAGCCA YPK_1641 1821009 - 1819765 - | MscS mechanosensitive ion channel YPK_1642 1823010 - 1823249 + | hypothetical protein YPK_1643 1824222 - 1823662 - | hypothetical protein YPK_1644 1824498 - 1825478 + | CRISPR-associated Cas1 family protein TERM 1878 1828165 - 1828154 - g 71 -4.4 -4.67353 | GCACTGACTCAAAAA GATC CGGC GATC CCCGTTTATTGCAAA TERM 1879 1828307 - 1828295 - g 75 -7.7 -4.20454 | opp_overlap 1828294 1828295 CAAGAAAGAACCAAA CTCGA ACC TCGAG ATAATTTTGTTGATT TERM 1880 1828418 - 1828440 + G 71 -9 -3.54424 | CAGGCGACCTGGAGT GGGGAGCAGC AAC GGTGCACCCC TTTCCGACAATCCAG YPK_1645 1825475 - 1828762 + | CRISPR-associated helicase Cas3 family protein TERM 1881 1829176 - 1829202 + G 71 -9.4 -3.59979 | opp_overlap 1829169 1829178 1829195 GCATTGAAGTTCACA CACAGTGATGCC AAA GGCAGCAGTGTG TTTAACCTGCCAGCG YPK_1646 1828918 - 1830264 + | CRISPR-associated Csy1 family protein YPK_1647 1830261 - 1831211 + | CRISPR-associated Csy2 family protein TERM 1882 1831377 - 1831361 - g 80 -4.3 -5.34309 | overlap 1831362 1831363 ATCATTAAAGAAAAA GCGGTGC GGG GCACCAT CTCCAACCGGTTGAA TERM 1883 1831823 - 1831837 + G 75 -5.7 -4.62872 | GAACAAGGTTTAGCG GGCAA CGGTT TTGCC TTTTTCACCGTTGAT YPK_1648 1831229 - 1832233 + | CRISPR-associated Csy3 family protein YPK_1649 1832244 - 1832798 + | CRISPR-associated Csy4 family protein TERM 1884 1832805 - 1832846 + T 71 -9.7 -2.71731 | gap 1 TGGTTTTGATTCTTT TTGGCCAGTGTTAACGTA TTGATTT TATGTTG-CACTGGCCAA TAGTTAAAGAATCAC TERM 1885 1832902 - 1832892 - T 75 -8.2 -3.90762 | TATGGGGCAAAAATA CCGC TTG GCGG GCGAGCTTCCCGCGC YPK_1650 1833895 - 1832876 - | aldo/keto reductase YPK_1651 1834409 - 1833906 - | formaldehyde-activating enzyme TERM 1886 1834280 - 1834270 - G 83 -8.2 -4.51699 | overlap 1834272 ATAACGACGATAAAA GGGC AAT GCCC CTGACTGGGAGAGGC YPK_1652 1835814 - 1834456 - | general substrate transporter TERM 1887 1835640 - 1835667 + g 85 -11.4 -3.78409 | opp_overlap 1835635 ATCCGAGTAATCCCT CCCATAATGGTG TAAG TGCCATTATGGG TTTGAGTTGAATTAA YPK_1653 1835938 - 1836147 + | hypothetical protein YPK_1654 1836262 - 1837188 + | LysR family transcriptional regulator TERM 1888 1837329 - 1837302 - f 91 -12.1 -3.47227 | opp_overlap 1837297 GGGTAAGCATCACAA CCATCTGGATG TAAATG CACCCAGATGG CGGAGTTCATAGAGC TERM 1889 1837574 - 1837591 + F 93 -4.2 -5.85178 | TGTCAATAATTTGAA TGTGAT GCAGTG ATCACA TTTTTTTTACATCTT TERM 1890 1838223 - 1838211 - g 87 -6.3 -5.0095 | AAAAAGAGAATAAAA GAGAA ATT TTCTC TCCTCGGGAAAATGA YPK_1655 1837676 - 1838413 + | LuxR family transcriptional regulator YPK_1656 1839050 - 1838406 - | autoinducer synthesis protein TERM 1891 1839499 - 1839516 + G 72 -5.7 -4.34866 | GACCGCAGTCCTTCT CTTTTTA CGAG TAAAAAG TTTGTCTTCTTCGGT YPK_1657 1839481 - 1840407 + | hypothetical protein TERM 1892 1840437 - 1840403 - T 72 -10.1 -2.76466 | gap 1, opp_overlap 1840409 1840411, overlap 1840411 1840414 ATAAAATTAAATCGA CGTA-GAGAGAACTGC TCGA GCAGCTCTCTCATTCG GATTAAGTGACAAAA TERM 1893 1840530 - 1840502 - T 73 -8.3 -3.68366 | gap 1, overlap 1840498 GCAGTTTAAAACTAA TTCACTGAC-CG TGAAAT CGCGTCAGTGAA TAAAGAGATTACGCC YPK_1658 1842266 - 1840539 - | sodium/hydrogen exchanger TERM 1894 1840656 - 1840646 - G 71 -8.2 -3.71848 | TTTGGTCACCAATAA CGGG TTC CCCG CCAAAGAGGTATAAA TERM 1895 1841135 - 1841115 - G 71 -8.3 -3.72576 | overlap 1841118 TTTGCGGGCAGCAAA TGACAGGGT GGT ACCCTGTAA AAGTAGTGATACCAG YPK_1659 1842855 - 1842610 - | hypothetical protein TERM 1896 1842913 - 1842893 - R 79 -6.9 -4.67692 | opp_overlap 1842893, overlap 1842909 TGAAAATGAAACAAA TCCTGATAA AAC TTAACAGGA TAGTTGTCCTGAAAA TERM 1897 1843296 - 1843285 - R 100 -5.8 -5.9873 | TGAGGATAAAAAAAA CGGT AAGC ACCG AGAATAAAGAAAGGT YPK_1660 1843798 - 1843415 - | osmoregulated periplasmic glucan biosynthetic protein TERM 1898 1844781 - 1844770 - g 89 -5.8 -5.25803 | AAGGCTGATAAAAAA GACG AAAT CGTC AGTATGCTCGGTGCC YPK_1661 1844284 - 1845870 + | periplasmic glucan biosynthesis protein MdoG YPK_1662 1845863 - 1848472 + | glycosyl transferase family protein TERM 1899 1848502 - 1848527 + F 74 -6.1 -4.55491 | gap 1, overlap 1848497 AGCAGGTTATAAAAA CGGGTGA-GCGC GTG GCGTATTGCCCG TTTTATCATTAAATC YPK_1663 1848505 - 1848837 + | hypothetical protein TERM 1900 1848887 - 1848903 + T 100 -9.4 -5.03314 | TGTCAGTAATCTGAA CCAGCC ACAAG GGCTGG TTTTTTACAGATAAC YPK_1664 1850554 - 1849016 - | amino acid/peptide transporter TERM 1901 1849209 - 1849176 - G 70 -8.1 -3.95584 | gap 1, overlap 1849161 1849177 TGGCCACCAATCAAA CCTGCGGCCAGGTTGC CAA GCGAACTGGC-GCAGA ACCAAAGCCCCATCA TERM 1902 1850752 - 1850784 + r 71 -6.6 -4.23529 | gap 1, opp_overlap 1850762 TATATCTTATTTTGA GATAAAAAGT-CGAT ATTC ATCGCATTTTTTATC TTTATATCTTAGTGT YPK_1665 1852178 - 1851258 - | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YPK_1666 1853113 - 1853277 + | hypothetical protein YPK_1667 1853464 - 1853592 + | hypothetical protein YPK_1668 1853636 - 1854703 + | rhodanese domain-containing protein YPK_1669 1854852 - 1855910 + | hypothetical protein TERM 1903 1855969 - 1855930 - T 100 -11.4 -4.37092 | overlap 1855931 ACGGTGGTTAGAAAA CCCTCAGGGCCACTGG TTAATTGG CCTACGGCCCTGAGGA ACCGAAAATGGGGTA TERM 1904 1855968 - 1855931 - T 93 -12.7 -3.21934 | overlap 1855930 CGGTGGTTAGAAAAC CCTCAGGGCCACTGG TTAATTGG CCTACGGCCCTGAGG AACCGAAAATGGGGT YPK_1670 1856138 - 1856025 - | hypothetical protein YPK_1671 1857066 - 1856482 - | LuxR family transcriptional regulator YPK_1672 1858448 - 1857333 - | sarcosine oxidase TERM 1905 1858658 - 1858633 - R 95 -7.7 -5.06816 | gap 1, opp_overlap 1858631 1858633 AGTGGTTAATAAAAA GACACCAGATAA TAT TTA-CTGGTGCC TGTTTATGGGTAATA YPK_1673 1858953 - 1858699 - | hypothetical protein TERM 1906 1859006 - 1859027 + r 75 -7.3 -4.371 | TAACGAGGATCAATG CGGCTCATT ACCG AGTGAGCTG TTTTAGTATACTCAA TERM 1907 1859206 - 1859184 - R 84 -5.4 -5.26875 | overlap 1859162 1859185 GTTTTAAGCAAAAAA GGCTGAGGAG CGA CTCCCCGGCA AAATGGTATTGTGGT TERM 1908 1859205 - 1859185 - R 78 -8.9 -3.75402 | overlap 1859162 1859184 TTTTAAGCAAAAAAG GCTGAGGAG CGA CTCCCCGGC AAAATGGTATTGTGG YPK_1674 1859704 - 1859459 - | DinI family protein YPK_1675 1861063 - 1860017 - | dihydroorotase, homodimeric type YPK_1676 1861298 - 1861585 + | antibiotic biosynthesis monooxygenase TERM 1909 1861772 - 1861727 - T 100 -15 -4.62957 | gap 1, overlap 1861732 1861733 1861758 AGAATCAAAGTAAAA TTAA-ACGGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCCATGTCAA CCGCCAGAGAAAGTG TERM 1910 1861766 - 1861732 - T 100 -18.7 -4.29472 | overlap 1861727 1861733 1861758 CAAAGTAAAATTAAA CGGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCCA TGTCAACCGCCAGAG TERM 1911 1861765 - 1861733 - T 100 -20 -3.16056 | overlap 1861732 1861727 1861758 AAAGTAAAATTAAAC GGCCTGAGTCCGGT GCAGT ACCGAACTCAGGCC ATGTCAACCGCCAGA YPK_1677 1865493 - 1861843 - | ribonuclease TERM 1912 1862935 - 1862921 - G 75 -7.8 -4.18018 | opp_overlap 1862920 TCTGGTGAGGCAAAA GCCCCT GCC AGAGGC ATGGCCGATTGTGCC TERM 1913 1864899 - 1864879 - G 76 -11.1 -3.18264 | opp_overlap 1864890 1864891, overlap 1864882 TTCCTGATGGATTAA GAAGGGCGC GGG GCGACCTTC AGCCGCTTTTTTAAT TERM 1914 1864891 - 1864905 + g 74 -2.7 -5.15634 | opp_overlap 1864882 1864879, overlap 1864890 TAAGAAGGGCGCGGG GCGAC CTTCA GCCGC TTTTTTAATCGCATC TERM 1915 1866503 - 1866517 + G 79 -10 -3.83844 | overlap 1866499 CACCGTTTAGACCGT GACACC TCG GGTGTC TTATTGGTTGCTAAA TERM 1916 1866784 - 1866767 - g 71 -9.1 -3.53811 | overlap 1866771 GCCACGCTGGTTAAA GCCAGCC CAGT GACTGGC CGGACGCATCAAATC YPK_1678 1866068 - 1867030 + | RluA family pseudouridine synthase TERM 1917 1867076 - 1867098 + F 100 -10.5 -5.18726 | opp_overlap 1867076 1867075 1867074 GATGATCATAAAAGG CGGGGGGCA CAGCA TGCGCCCCG TTTTTATTGTGCCCA TERM 1918 1867098 - 1867076 - f 76 -11.2 -2.56836 | opp_overlap 1867076, overlap 1867075 1867074 GATGATCATAAAAGG CGGGGGGCAC AGC ATGCGCCCCG TTTTTATTGTGCCCA TERM 1919 1867137 - 1867119 - f 100 -16 -4.37092 | opp_overlap 1867119 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 1920 1867119 - 1867137 + F 100 -16 -3.07307 | opp_overlap 1867119 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_1679 1867250 - 1867708 + | transposase IS200-family protein TERM 1921 1867786 - 1867810 + T 88 -9.9 -4.21351 | opp_overlap 1867789, overlap 1867772 1867788 1867789 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTCGACTGTTT TERM 1922 1867788 - 1867808 + T 100 -12.5 -3.69469 | opp_overlap 1867789, overlap 1867786 1867772 1867789 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTCGACTGT TERM 1923 1867807 - 1867789 - T 100 -16 -4.8048 | opp_overlap 1867788 1867786 1867772 1867789 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCGACTG TERM 1924 1867789 - 1867807 + T 100 -16 -2.80958 | opp_overlap 1867789, overlap 1867788 1867786 1867772 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTCGACTG YPK_1680 1868442 - 1867846 - | maf protein TERM 1925 1868890 - 1868844 - g 75 -11.6 -2.69471 | overlap 1868843 CCATGTTCATACAAC GTATTGTTTCAGCCCGATCGTC AAT GATGAGCAGGCTGAAGCATTAC CGGAAGCGTACGAGC YPK_1681 1868584 - 1869108 + | hypothetical protein YPK_1682 1869121 - 1869288 + | ribosomal protein L32 YPK_1683 1869322 - 1870356 + | fatty acid/phospholipid synthesis protein PlsX TERM 1926 1870805 - 1870830 + G 74 -9.9 -3.57263 | gap 1, opp_overlap 1870810, overlap 1870809 CCCGTGCATTGGATC CAGAA-GATCGT GGT ACGATCATTCTG TTTGGCGATGGCGCT TERM 1927 1870919 - 1870931 + G 74 -9.1 -3.63627 | overlap 1870911 CTGATGGTCGTTATG GCGAG TTG CTCGC TTTACCGTATCCAGA YPK_1684 1870363 - 1871313 + | 3-oxoacyl-(acyl-carrier-protein) synthase III YPK_1685 1871351 - 1872280 + | malonyl CoA-acyl carrier protein transacylase YPK_1686 1872294 - 1873028 + | 3-oxoacyl-(acyl-carrier-protein) reductase YPK_1687 1873182 - 1873418 + | acyl carrier protein TERM 1928 1873443 - 1873468 + F 100 -11.9 -5.93809 | opp_overlap 1873443, overlap 1873444 CTTTAAGTTTAGATA GTTAGGCGGTC ATTC GACCGCCTAAG TTTTTTTTGTCCGAA TERM 1929 1873468 - 1873443 - f 86 -11.9 -2.91681 | opp_overlap 1873443 1873444 CTTTAAGTTTAGATA GTTAGGCGGTC ATTC GACCGCCTAAG TTTTTTTTGTCCGAA TERM 1930 1873444 - 1873467 + F 100 -15.4 -4.15201 | opp_overlap 1873443, overlap 1873443 TTTAAGTTTAGATAG TTAGGCGGTC ATTC GACCGCCTAA GTTTTTTTTGTCCGA YPK_1688 1873513 - 1874754 + | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 1931 1874780 - 1874807 + F 78 -10.6 -3.24381 | opp_overlap 1874785 1874787, overlap 1874785 TAAGGTTCTGATGCT AAAAAGGCCCGG TTTT CCGGGTCTTTTA TTAAGTTCATCTTAT TERM 1932 1874785 - 1874802 + F 100 -10.5 -4.72631 | opp_overlap 1874785 1874787, overlap 1874780 TTCTGATGCTAAAAA GGCCCGG TTTT CCGGGTC TTTTATTAAGTTCAT TERM 1933 1874802 - 1874785 - f 91 -8.3 -4.62069 | opp_overlap 1874785 1874780, overlap 1874787 TTCTGATGCTAAAAA GGCCCGG TTTT CCGGGTC TTTTATTAAGTTCAT YPK_1689 1875116 - 1875922 + | aminodeoxychorismate lyase TERM 1934 1876034 - 1876060 + F 72 -10.1 -2.89563 | gap 1, opp_overlap 1876023, overlap 1876029 1876035 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGTC TERM 1935 1876035 - 1876061 + F 84 -10.1 -3.8381 | gap 1, opp_overlap 1876023, overlap 1876029 1876034 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGTCT YPK_1690 1876211 - 1877236 + | aminodeoxychorismate lyase YPK_1691 1877226 - 1877864 + | dTMP kinase TERM 1936 1878316 - 1878337 + G 71 -6.6 -4.20491 | gap 1, overlap 1878318 1878326 CCAACCCGCCAGCTT GCTGGCTAC ACTGC GTAGCC-GC TGTTTTTATTGGTAT TERM 1937 1878326 - 1878339 + G 75 -3.7 -5.17744 | overlap 1878318 1878316 AGCTTGCTGGCTACA CTGCG TAGC CGCTG TTTTTATTGGTATCT YPK_1692 1877864 - 1878886 + | DNA polymerase III, delta prime subunit YPK_1693 1878901 - 1879710 + | TatD family hydrolase TERM 1938 1880695 - 1880680 - g 70 -7.6 -3.85165 | CATTCCAAATGCAAA TTGGTG AGTA CACCAA CGCAGCGGGTCAGGT YPK_1694 1880016 - 1881449 + | PTS system, glucose-specific IIBC subunit TERM 1939 1881489 - 1881472 - f 100 -12.7 -4.35116 | opp_overlap 1881472 TAGGGGAGAGCAAAA GGGAGGC GAAA GCCTCCC TTTATTATTTCAAAC TERM 1940 1881472 - 1881489 + F 100 -12.7 -4.56978 | opp_overlap 1881472 TAGGGGAGAGCAAAA GGGAGGC GAAA GCCTCCC TTTATTATTTCAAAC YPK_1695 1881829 - 1882647 + | shikimate dehydrogenase substrate binding subunit YPK_1696 1882821 - 1883174 + | histidine triad (HIT) protein TERM 1941 1883562 - 1883585 + G 70 -2.4 -4.96501 | gap 1, overlap 1883563 1883566 1883567 AATTAACAATAATTT TA-ATGCGCGC AGT GCGCGTCTCTA TTTATTTTTATAACG TERM 1942 1883567 - 1883579 + G 75 -10.5 -3.34428 | overlap 1883566 1883563 1883562 ACAATAATTTTAATG CGCGC AGT GCGCG TCTCTATTTATTTTT YPK_1697 1883209 - 1883598 + | hypothetical protein YPK_1698 1883639 - 1884214 + | membrane lipoprotein lipid attachment site TERM 1943 1884245 - 1884271 + G 75 -11.7 -2.73994 | gap 1, opp_overlap 1884244 1884242 1884245, overlap 1884249 1884250 CTTAATAGCAAACAT CAATCCGGCGGT GAAA ACCGCCG-ATTG TCATATTAGCCCGGT TERM 1944 1884271 - 1884245 - g 75 -11.7 -2.72568 | gap 1, opp_overlap 1884245 1884249 1884250, overlap 1884244 1884242 CTTAATAGCAAACAT CAATCCGGCGGT GAAA ACCGCCG-ATTG TCATATTAGCCCGGT TERM 1945 1884249 - 1884268 + G 71 -9.2 -3.52073 | opp_overlap 1884245 1884244 1884242, overlap 1884245 1884250 ATAGCAAACATCAAT CCGGCGGT GAAA ACCGCCGA TTGTCATATTAGCCC TERM 1946 1884250 - 1884267 + G 81 -12.7 -2.70923 | opp_overlap 1884245 1884244 1884242, overlap 1884249 1884245 TAGCAAACATCAATC CGGCGGT GAAA ACCGCCG ATTGTCATATTAGCC TERM 1947 1884387 - 1884367 - g 78 -7.6 -4.37658 | AATCGCCGCACAAAA GTCAGTTG GGGGT CAACCGAC GACGTGAGCGTAAAT TERM 1948 1885030 - 1885042 + G 85 -7.7 -4.68919 | TGGCATGGGCCGCGC CGTTG CGC CAACG TTTTAATTTGTCTTT YPK_1699 1884195 - 1885061 + | thiamine kinase YPK_1700 1885132 - 1886163 + | glycoside hydrolase family 3 protein YPK_1701 1886291 - 1886833 + | hypothetical protein TERM 1949 1887500 - 1887488 - g 81 -7.7 -4.6313 | opp_overlap 1887487 GTGAAAACAAAACAA TCAGC CTG GCTGA GATTTGTGATGAACA YPK_1702 1887208 - 1888512 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1950 1888762 - 1888741 - f 95 -13.1 -3.15663 | overlap 1888725 ACTCATCGGGATTAA TGAGCCTCA TTCG TGAGGCTCA CCCTGCGGGCTAGCA YPK_1703 1889041 - 1889745 + | hypothetical protein YPK_1704 1889753 - 1890166 + | hypothetical protein TERM 1951 1890348 - 1890330 - f 70 -7.3 -3.85698 | CCCTGTGTTTACAAA CGGCGAG TCACG CACGCCG TATCCCGGTATTTTA TERM 1952 1891005 - 1890986 - g 71 -2.8 -4.87665 | CCCCATTGATAAAAA TGGTCAAC TGGT GCTGAACA ACCGAGCGTAATACC YPK_1705 1890477 - 1891016 + | 17 kDa surface antigen YPK_1706 1894702 - 1891256 - | transcription-repair coupling factor TERM 1953 1892727 - 1892749 + g 74 -6.3 -4.34486 | gap 1, overlap 1892726 1892723 TGTTGAGCCAGCAGG GTGGTGG-GT ACCA ACACCGCCAC TTGTTTATTATTGGT TERM 1954 1895027 - 1895043 + G 100 -10.1 -4.5123 | TGCGTGGGCGTGCTT CTGACCG CTT CGGTCGG TTTGTTTCGTGGCTT TERM 1955 1895446 - 1895462 + G 79 -10.1 -3.78775 | opp_overlap 1895446 CAGCTCGGGGTTAAA CGCGGTG AAA CACTGCG TTTGATGGTACCGAG YPK_1707 1894972 - 1896174 + | LolC/E family lipoprotein releasing system, transmembrane protein YPK_1708 1896167 - 1896871 + | lipoprotein releasing system, ATP-binding protein YPK_1709 1896871 - 1898118 + | lipoprotein releasing system, transmembrane protein LolE TERM 1956 1898379 - 1898405 + G 74 -10.9 -2.85069 | opp_overlap 1898377, overlap 1898376 1898374 TACTGCGAATGTACC GTCTGCGATGG GGCAA CCATTGCAGGC TGATCTTTCCCGATT TERM 1957 1898504 - 1898536 + G 70 -9.8 -3.2327 | opp_overlap 1898507, overlap 1898501 1898507 1898524 AGTTTCGCACTTACC CAACGGTGCTGGGG CTTAT TCTCGGCACCGGTG TTGGTGGTGGGTTAA YPK_1710 1898137 - 1899051 + | ROK family protein TERM 1958 1899063 - 1899049 - f 85 -7.2 -4.83615 | CATTTGGCAGAAAAA TAATCG TCA CGATTA ATAACAAGACAGATA TERM 1959 1899430 - 1899406 - g 78 -11.5 -3.01416 | opp_overlap 1899402 1899398 1899397, overlap 1899408 CAGCAGCCAGACATA GAGCCAAATGC TGC GCATTTCGCTC TGGCTGATTTAGAAG YPK_1711 1899100 - 1899936 + | silent information regulator protein Sir2 TERM 1960 1900679 - 1900669 - g 71 -6.8 -4.14739 | CGACTGATGGTAAAA CCCT GTT AGGG GCGGATGATAAAGCG YPK_1712 1900266 - 1901501 + | peptidase T TERM 1961 1901521 - 1901537 + T 84 -10.8 -3.72051 | opp_overlap 1901521 AACGATAGAGAGAAA CGCCCC GAAAA GGGGCG TTTGAGGTTATTGAC TERM 1962 1901537 - 1901521 - T 93 -10.8 -4.1897 | opp_overlap 1901521 AACGATAGAGAGAAA CGCCCC GAAAA GGGGCG TTTGAGGTTATTGAC YPK_1713 1902872 - 1901751 - | cupin 4 family protein YPK_1714 1904362 - 1902956 - | integral membrane sensor signal transduction histidine kinase TERM 1963 1903565 - 1903578 + g 73 -8.1 -4.13014 | TAGTGTGGTTTGTAG CACCG CCAG CGGTG TTTTAAGGCTGTGAG YPK_1715 1905087 - 1904416 - | two component transcriptional regulator YPK_1716 1905876 - 1905298 - | putative lipoprotein TERM 1964 1905755 - 1905775 + g 74 -6.9 -4.42386 | ATCCCACCCATATTT TTATTGCCA ATA TGGCTATAA TTTTGTCGGTCAAAC YPK_1717 1906083 - 1905916 - | hypothetical protein TERM 1965 1906101 - 1906056 - G 87 -13 -3.33696 | gap 1, opp_overlap 1906059 1906061, overlap 1906059 GGGGGGGGGAAGGAA TAATACAGATGGCGTTAGCTT TTACC AAACTAA-GCCACCTGTATTA GATAAAGAATATTAC TERM 1966 1906098 - 1906059 - G 82 -10.3 -3.81146 | gap 1, opp_overlap 1906059 1906061, overlap 1906056 GGGGGGAAGGAATAA TACAGATGGCGTTAGCTT TTACC AAACTAA-GCCACCTGTA TTAGATAAAGAATAT YPK_1718 1907483 - 1906113 - | adenylosuccinate lyase YPK_1719 1908170 - 1907544 - | hypothetical protein YPK_1720 1909343 - 1908228 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1967 1908909 - 1908925 + g 71 -6.5 -4.13945 | opp_overlap 1908908 TTTATTTCCATCAAG GCCGC GCAGTAG GCGGC TTTTACCATCAACAT TERM 1968 1909293 - 1909319 + g 79 -3.5 -5.30686 | opp_overlap 1909290, overlap 1909295 GGAAACGGAAGAGTC GACACCGCCGG ACATG CCGACGATGAC TTTTTTCTGGCTATT YPK_1721 1909976 - 1909530 - | NUDIX hydrolase TERM 1969 1909872 - 1909889 + g 71 -2.6 -5.00339 | overlap 1909873 GGCTTCCAGATGACC GGCTGG CTGGTT CCAGCG TTTTTCATTGTTGAT YPK_1722 1910595 - 1909969 - | pseudouridine synthase TERM 1970 1910523 - 1910505 - G 74 -9.5 -3.57389 | overlap 1910503 TATTGAATAACAATA CCCGCCG TGGCG CAGCGGG GGGGGGCTGCCTGGC TERM 1971 1910652 - 1910630 - H 83 -12 -2.80113 | GATTAGCGCATTATA CCCCAATCCG TTT CGGATTGGCG CGGAACGAATATTCA YPK_1723 1910726 - 1911979 + | isocitrate dehydrogenase, NADP-dependent TERM 1972 1911991 - 1912032 + T 100 -14.7 -3.54 | opp_overlap 1911998, overlap 1911992 1911994 1911998 GTAATTCTGACGTAT CTATAAACTTCACGAGGGC TTAT GCTTTCGTGAAGTTTATAC TATTTATGGCGTGCT TERM 1973 1911992 - 1912031 + T 100 -18.2 -2.71918 | opp_overlap 1911998, overlap 1911991 1911994 1911998 TAATTCTGACGTATC TATAAACTTCACGAGGGC TTAT GCTTTCGTGAAGTTTATA CTATTTATGGCGTGC TERM 1974 1911994 - 1912029 + T 100 -16.4 -2.90065 | opp_overlap 1911998, overlap 1911992 1911991 1911998 ATTCTGACGTATCTA TAAACTTCACGAGGGC TTAT GCTTTCGTGAAGTTTA TACTATTTATGGCGT TERM 1975 1911998 - 1912025 + T 100 -12.8 -4.12037 | opp_overlap 1911998, overlap 1911994 1911992 1911991 TGACGTATCTATAAA CTTCACGAGGGC TTAT GCTTTCGTGAAG TTTATACTATTTATG TERM 1976 1912025 - 1911998 - T 77 -8.4 -3.92869 | opp_overlap 1911998 1911994 1911992 1911991 TGACGTATCTATAAA CTTCACGAGGGC TTAT GCTTTCGTGAAG TTTATACTATTTATG YPK_1724 1913167 - 1912121 - | LacI family transcription regulator TERM 1977 1912893 - 1912883 - G 80 -6.8 -4.72986 | TAGGTTCACTAAAAA GCTG TTC CAGC CAAACTCTCGGGCAG TERM 1978 1913389 - 1913370 - R 79 -7.8 -4.2558 | overlap 1913371 CAGGCGGCAGTAAAA CGCCCTCA ATAT TGAGGGCT GAATGTATTGAGGAA TERM 1979 1913388 - 1913371 - R 84 -11.3 -3.15027 | overlap 1913370 AGGCGGCAGTAAAAC GCCCTCA ATAT TGAGGGC TGAATGTATTGAGGA YPK_1725 1913687 - 1913427 - | hypothetical protein YPK_1726 1915387 - 1913807 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YPK_1727 1917164 - 1916307 - | NmrA family protein YPK_1728 1917300 - 1917707 + | HxlR family transcriptional regulator YPK_1729 1918027 - 1917935 - | hypothetical protein TERM 1980 1918956 - 1918938 - g 81 -8.1 -4.51847 | opp_overlap 1918943, overlap 1918929 AAAGAAGGGACAAAA GTGACCC TCAGT GGGCCAC TGGCGTTATCATCGA YPK_1730 1918239 - 1919564 + | histidine acid phosphatase TERM 1981 1919741 - 1919706 - T 91 -5.5 -5.60993 | gap 2 GCTGTCATAAAAAAA GCCGGG--TGGCCCA ATAAAAGG TAGGCCAGACCCGGC AAATAAATACCGGCA YPK_1731 1920069 - 1919866 - | hypothetical protein YPK_1732 1921271 - 1920372 - | hypothetical protein TERM 1982 1920643 - 1920655 + g 71 -4.1 -4.66537 | TGGCTACGGGGGCGC TTGGT GAT ACCGA TTTTATGTTGCAACC YPK_1733 1921812 - 1921363 - | AsnC family transcriptional regulator TERM 1983 1921525 - 1921514 - G 73 -2.2 -5.03747 | AAACGGCTCAAAAAA CAGT CATC ACCG GTTATTTTGTCACAC YPK_1734 1922134 - 1922283 + | hypothetical protein YPK_1735 1922856 - 1922323 - | hypothetical protein TERM 1984 1922994 - 1923014 + H 76 -9.7 -3.37879 | opp_overlap 1923011, overlap 1923012 ACCCTTTATACCCGT CGCCCTTCA AGA TGAAGGGGG TTAGTTGCCCTTGCT YPK_1736 1923025 - 1923186 + | hypothetical protein YPK_1737 1924149 - 1923139 - | PIG3 family NAD(P)H quinone oxidoreductase TERM 1985 1924286 - 1924274 - R 71 -2 -5.15969 | GTGTAATGGAAAAAA TTCA TAGAG TGAA CGTGCGTAACTATCA YPK_1738 1924396 - 1924253 - | hypothetical protein TERM 1986 1924370 - 1924352 - G 100 -11 -5.9003 | opp_overlap 1924351 AAAGGAACAAAAAAA GCGCCCAT AGG ATGAGCGC GTAAATTTTGCAAAG YPK_1739 1927756 - 1924556 - | glycoside hydrolase family protein TERM 1987 1926032 - 1926014 - G 90 -10.2 -4.42806 | CCAGTCCCAAATAAA CCCGCCCT GTA AGCGCGGG TACTGACGAAATGCC YPK_1740 1928297 - 1928509 + | cold-shock DNA-binding domain-containing protein TERM 1988 1928536 - 1928549 + F 100 -9.5 -5.25893 | opp_overlap 1928536 CTGATTATAAAAAAA CCCGC TAAG GCGGG TTTTTTACTGTCTGT TERM 1989 1928549 - 1928536 - f 100 -9.5 -5.67063 | opp_overlap 1928536 CTGATTATAAAAAAA CCCGC TAAG GCGGG TTTTTTACTGTCTGT YPK_1741 1928724 - 1928915 + | DsrB protein TERM 1990 1928995 - 1928966 - T 100 -8 -5.252 | gap 2, opp_overlap 1928966 TATTGCGATAAAAAA CCGGAGG--AAGGT TCAT ACCTTATCCTCCGG TTTTTGCTTTTTATC TERM 1991 1928966 - 1928995 + T 95 -8 -5.2197 | gap 2, opp_overlap 1928966 TATTGCGATAAAAAA CCGGAGG--AAGGT TCAT ACCTTATCCTCCGG TTTTTGCTTTTTATC YPK_1742 1930837 - 1929098 - | methyl-accepting chemotaxis sensory transducer TERM 1992 1929823 - 1929852 + g 75 -7.9 -4.1822 | gap 1, overlap 1929824 CATTCTGTTTCACGG TTGCGGTCAGT-TG CTC CATGCTGGCCGCAG TTTGTTCAAGTGAAG TERM 1993 1930486 - 1930499 + g 80 -4.5 -5.055 | GCTGTGACTGAGCTA TGCGG CCTT CTGCA TTTTTTAGGCCTTGC YPK_1743 1931963 - 1932661 + | MgtC/SapB transporter TERM 1994 1934088 - 1934069 - g 73 -7.8 -4.11484 | opp_overlap 1934087, overlap 1934070 TCTAATCTGGCAAAA GGGGCCAT CGCG ATGGCCCG GCGTAAAGTCGTGGT TERM 1995 1934087 - 1934070 - g 74 -11.3 -3.06569 | overlap 1934069 CTAATCTGGCAAAAG GGGCCAT CGCG ATGGCCC GGCGTAAAGTCGTGG YPK_1744 1933046 - 1935745 + | magnesium-translocating P-type ATPase TERM 1996 1935779 - 1935819 + F 71 -9.1 -3.36569 | opp_overlap 1935783 1935785, overlap 1935777 1935781 1935783 AGCCTGGTTGATCTC AAGACACTATTCCGGGG GTGGCTG CCCTGGAATAGTGTGTG TATTTAAAAGATTAG TERM 1997 1935781 - 1935817 + F 86 -11.7 -3.24976 | opp_overlap 1935783 1935785, overlap 1935779 1935777 1935783 CCTGGTTGATCTCAA GACACTATTCCGGGG GTGGCTG CCCTGGAATAGTGTG TGTATTTAAAAGATT TERM 1998 1935783 - 1935815 + F 100 -14.3 -3.18571 | opp_overlap 1935783 1935785, overlap 1935781 1935779 1935777 TGGTTGATCTCAAGA CACTATTCCGGGG GTGGCTG CCCTGGAATAGTG TGTGTATTTAAAAGA TERM 1999 1935815 - 1935783 - f 86 -12.1 -3.05844 | opp_overlap 1935783 1935781 1935779 1935777, overlap 1935785 TGGTTGATCTCAAGA CACTATTCCGGGG GTGGCTG CCCTGGAATAGTG TGTGTATTTAAAAGA TERM 2000 1936871 - 1936895 + F 78 -7.3 -4.45168 | GAAGGATCCCTGGTT TTGAGTGATAA ATT TTGTCATTCAA TTTATGTTTTAAAAC YPK_1745 1936933 - 1937283 + | flagellar transcriptional activator YPK_1746 1937287 - 1937868 + | flagellar transcriptional activator FlhC TERM 2001 1938796 - 1938782 - g 80 -8.6 -4.40993 | CAGAAACGACCAAAA TGATGC AAT GCATCA AAGTGACTCTGCTGT YPK_1747 1938073 - 1938960 + | chemotaxis protein MotA TERM 2002 1939534 - 1939512 - g 78 -11.4 -3.00476 | overlap 1939517 ATCCTGAATGACATA CCGAATAAAC TCA GTTTATCCGG TCACACCGATGACCT TERM 2003 1939837 - 1939815 - g 74 -2.6 -5.03994 | opp_overlap 1939820, overlap 1939816 CTGGATATAGAAAAA GCAACCGGCT TAA AGCAGATTGA TACTCACGGGACGGT YPK_1748 1938957 - 1940312 + | OmpA/MotB domain-containing protein TERM 2004 1940342 - 1940355 + G 74 -3.1 -5.14563 | GCATGGATATTACCG CGTTT TATC AGACG TTTTTTGATGAAGCA TERM 2005 1940865 - 1940845 - g 74 -11.1 -2.7535 | opp_overlap 1940842 1940838, overlap 1940842 GCTGGCAACACATCA CCCGCGTTG CTT CAAGGCGGG ATGCGTATTCGTTTG TERM 2006 1941050 - 1941082 + G 76 -9.2 -3.96148 | opp_overlap 1941050 1941053 TGGAGCCTGAGCAGA TTAGCTTTGTGTCC GCAGG GGACACAGAGCAGA TTTATGCTGAGCAGA TERM 2007 1941079 - 1941053 - g 72 -10.9 -2.66435 | opp_overlap 1941050, overlap 1941050 AGCCTGAGCAGATTA GCTTTGTGTCC GCAGG GGACACAGAGC AGATTTATGCTGAGC TERM 2008 1942195 - 1942231 + G 77 -10.1 -3.55084 | overlap 1942179 1942193 CGCGTGCTGCAAGTT CGCGGTGAATTTCTACC ATT GGTTGAATTGTACCGCG TCTTTGATGTTAAAA YPK_1749 1940323 - 1942506 + | CheA signal transduction histidine kinase TERM 2009 1943126 - 1943116 - g 80 -6.8 -4.70659 | GTTGATATCGAAAAA CTGC TGA GCAG TGAAGAGATGTCGTT YPK_1750 1942669 - 1943166 + | CheW protein TERM 2010 1943229 - 1943254 + F 71 -8.4 -3.54382 | gap 1, opp_overlap 1943216 1943228 1943233 AAGGTTTCGACGAAT CCAACACC-GA CAGGA TCAGGTGTTGG TTGATATTTGTTCAG TERM 2011 1943300 - 1943325 + F 100 -16.2 -3.0644 | overlap 1943289 1943307 AGCCGTCTCAACCGC GCAGGAGGGC AGGCCG GCCCTCCTGC TCTTGCGGCTTGCCT TERM 2012 1944336 - 1944350 + G 71 -6.4 -4.30576 | TCGGCGGTGTGATCA TGGCAC TGG GTGTCA TTTTCCTGCTGAAAG TERM 2013 1945567 - 1945592 + G 75 -5.4 -4.70319 | gap 1 TTTCAGCCAGGTTAC GCTAACCCTGC TGCTC GC-GGGTCAGC TTTTAGTTTTGGTAC YPK_1751 1943786 - 1946650 + | putative integral membrane protein TERM 2014 1947242 - 1947232 - g 77 -6.8 -4.55689 | ACTATTCACAGAAAA GGTG CTA CACC GGCCGATATCTTCCG YPK_1752 1946719 - 1947420 + | putative lipoprotein TERM 2015 1947684 - 1947702 + G 71 -8.9 -3.51158 | GCGTATGAAAGTGGT TACCAGC CTGCT GCTGGTA TTAGTATTATTTGGT TERM 2016 1948061 - 1948033 - g 73 -2.5 -5.03145 | opp_overlap 1948042, overlap 1948034 GAAGGCGCCAAAAAA TTAAAACAGTCCT ACG AGGAATATTTTAG TGCCTTAACCGAACT TERM 2017 1948638 - 1948626 - g 71 -6.9 -4.16251 | overlap 1948617 ACAGAACGCTGAAAA CGCCC GTC AGGCG AGTCAATTAGCATTG YPK_1753 1947661 - 1949334 + | methyl-accepting chemotaxis sensory transducer TERM 2018 1951229 - 1951197 - f 76 -10.7 -2.60808 | overlap 1951193 AGGAGTGACAATCGA TCATCACTCGTAACG GGT CATCACGAGTAACGA CAAGTGGCTGTAAAG TERM 2019 1952039 - 1952063 + G 77 -6.4 -4.51799 | opp_overlap 1952040, overlap 1952040 TCTATTTTGATAAAG AGACGCAGGA ACGCA TTCTGCGTCG TTTTGTACCTTTGCT TERM 2020 1952040 - 1952062 + G 73 -9.9 -3.29995 | opp_overlap 1952040, overlap 1952039 CTATTTTGATAAAGA GACGCAGGA ACGCA TTCTGCGTC GTTTTGTACCTTTGC YPK_1756 1951300 - 1952187 + | MCP methyltransferase, CheR-type TERM 2021 1952679 - 1952658 - g 71 -3.8 -4.68593 | gap 1 CTCAGCAGTGAAAAA TTGATCGCC ATTGG GGC-ATCAA CTGGCGGTACTGAGG YPK_1757 1952187 - 1953236 + | response regulator receiver modulated CheB methylesterase YPK_1758 1953337 - 1953726 + | response regulator receiver protein YPK_1759 1953736 - 1954380 + | chemotaxis phosphatase, CheZ TERM 2022 1954402 - 1954425 + F 100 -14.6 -4.41609 | TATCGATAGCGCTAA CCGGTAGGGA ATTG TCCCTGCCGG TTTATATTTGTCATA TERM 2023 1955411 - 1955432 + G 71 -7.3 -3.96624 | gap 1, overlap 1955381 AAAAGTGATCCAGGT GCAGCCTTTC CGT GGAAGGC-GC TTTATGATGCAGGTA YPK_1760 1954937 - 1955701 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD TERM 2024 1956355 - 1956369 + G 70 -7.8 -3.85817 | GGAAAAGGTGGGATC GCTGGG AAG CCTAGC TTTATCGCCACCCCT TERM 2025 1956557 - 1956571 + G 79 -11.4 -3.1506 | CGATTTCATCGACCT CCACCG ATG CGGTGG TTGGTAGCCAGCTTT TERM 2026 1956659 - 1956636 - g 70 -9.6 -3.09933 | gap 1 CGCCAACTCAGTGAA CCCGCAAG-AC TCC GTGCCTGCGGG TCAGGATGCTATTGC TERM 2027 1957025 - 1957039 + G 75 -11.4 -2.64747 | opp_overlap 1957016, overlap 1957024 1957027 AGATCACCGGTGTGG CAGCCG GTT CGGCTG GTTATGATGCGGTCA TERM 2028 1957502 - 1957516 + G 75 -11.4 -2.64747 | opp_overlap 1957493, overlap 1957501 1957504 AGATCACCGGTGTGG CAGCCG GTT CGGCTG ATTATGATGCGGTCA YPK_1761 1956058 - 1958688 + | YadA domain-containing protein TERM 2029 1958726 - 1958755 + F 84 -10.7 -3.61089 | opp_overlap 1958727, overlap 1958727 GTTTAATAATCATTA ACGGGTTGTGCGA TTTT TTGCACAGCCCGA TTCTACTTCTTAGGG TERM 2030 1958727 - 1958754 + F 95 -14.2 -2.76171 | opp_overlap 1958727, overlap 1958726 TTTAATAATCATTAA CGGGTTGTGCGA TTTT TTGCACAGCCCG ATTCTACTTCTTAGG TERM 2031 1958754 - 1958727 - f 76 -9.8 -3.33171 | opp_overlap 1958727 1958726 TTTAATAATCATTAA CGGGTTGTGCGA TTTT TTGCACAGCCCG ATTCTACTTCTTAGG YPK_1762 1958788 - 1959741 + | hypothetical protein YPK_1763 1960041 - 1960214 + | hypothetical protein YPK_1764 1961589 - 1960360 - | alanine racemase YPK_1765 1962185 - 1961991 - | hypothetical protein YPK_1766 1962211 - 1962330 + | hypothetical protein YPK_1767 1962734 - 1962982 + | hypothetical protein TERM 2032 1963122 - 1963148 + F 72 -7.2 -3.9749 | gap 1, overlap 1963121 CATCCCTGGGGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCTTCTGCCT TERM 2033 1964511 - 1964497 - g 79 -11.4 -3.19522 | opp_overlap 1964496 1964495 CCAGTCAAGATGGAA CGCCTG TAT CAGGCG GGTTATGCCGAAGGA YPK_1768 1963375 - 1964631 + | patatin TERM 2034 1964899 - 1964873 - g 83 -2.2 -5.60993 | opp_overlap 1964873 TCCTCGATAAAAAAA GTGTTCAGCG ATAGCTA CTCGGAACAC TCTTTCGATGAATGG YPK_1769 1964786 - 1965019 + | hypothetical protein YPK_1770 1965302 - 1965475 + | hypothetical protein YPK_1771 1965827 - 1966216 + | hypothetical protein YPK_1772 1966565 - 1966326 - | hypothetical protein YPK_1773 1967762 - 1966773 - | spore coat U domain-containing protein YPK_1774 1970415 - 1967968 - | fimbrial biogenesis outer membrane usher protein YPK_1775 1971270 - 1970518 - | chaperone protein YPK_1776 1971858 - 1971301 - | spore coat U domain-containing protein YPK_1777 1972409 - 1971879 - | spore coat U domain-containing protein YPK_1778 1972969 - 1972415 - | spore coat U domain-containing protein TERM 2035 1972741 - 1972725 - G 71 -6.5 -4.29304 | opp_overlap 1972730 1972731, overlap 1972721 GCACTACAATACAAA CTGAGAG TCC CGCTCAG TGTGCCACTGAATGC YPK_1779 1976080 - 1973450 - | hypothetical protein TERM 2036 1974190 - 1974204 + gr 77 -8.5 -3.98282 | overlap 1974191 TAATCTGGCTACCCA CGGCC CGTGC GGCCG TTTCATTACTATACA TERM 2037 1975601 - 1975620 + gr 72 -10 -2.76671 | opp_overlap 1975601, overlap 1975600 GAGATGAATCATTAA TTCGCCTG TATT CAGGCGGA ATTTAGGCTGAGTAT YPK_1780 1977401 - 1976049 - | PqiA family integral membrane protein TERM 2038 1977123 - 1977108 - GH 71 -9 -3.39449 | CGGTATTAACAGCAA CATGGC GCAA GCCATG GCGGTCAACCGGGTC TERM 2039 1977456 - 1977437 - H 81 -10.8 -3.34936 | opp_overlap 1977437 1977447 AACATTACAGAGGAA TACCCTTG TCGC CAAGGGTA TTTAATGATTATTTT TERM 2040 1977437 - 1977456 + H 90 -10.8 -3.91642 | opp_overlap 1977437, overlap 1977447 AACATTACAGAGGAA TACCCTTG TCGC CAAGGGTA TTTAATGATTATTTT TERM 2041 1977788 - 1977776 - g 75 -6.2 -4.4891 | CGCAGTAGCAGAAAA CCGC GTTCA GCGG GTAGGTAATGTGCAT YPK_1781 1977528 - 1978025 + | hypothetical protein TERM 2042 1978053 - 1978072 + F 86 -12.2 -3.1552 | overlap 1978051 GTGGCAATTGCTGAT GGCGTCAT TATA ATGACGCC TGTTCATGCCTGCGC TERM 2043 1978177 - 1978187 + G 80 -8.2 -4.41348 | AGCCTTTTTGGCCGA GCGG TTC CCGC TTTGTTTCACCGCCG TERM 2044 1978299 - 1978278 - g 78 -10.9 -3.29147 | GGGAAGAGAATTTAA GCAAAACGC AATT GCGTTCTGC GCTGCGTCTCTACAC TERM 2045 1978577 - 1978550 - g 74 -2.7 -5.08824 | overlap 1978551 CCGGCAGGTAAAAAA CCTGCA-CCGCGT CGTG AAGCGGGTGC-GG CTCCGGAAAACCGCA YPK_1782 1978121 - 1978834 + | ProQ activator of osmoprotectant transporter ProP YPK_1783 1978854 - 1980932 + | carboxyl-terminal protease TERM 2046 1980954 - 1980975 + TF 100 -8.7 -6.31682 | opp_overlap 1980954 AAATAATATGAAGAA TCCGGGTCT TATT GGACTCGGA TTTTTTTTTGCTTTT YPK_1785 1982393 - 1982205 - | hypothetical protein YPK_1784 1981388 - 1982269 + | HtpX domain-containing protein TERM 2047 1982347 - 1982375 + gF 100 -13.2 -5.44119 | ATAATATGGTCTTCA CACCCTGTGAGC GGTAA GCTGACAGGGTG TTTTTTTACCGTGGC TERM 2048 1982538 - 1982551 + FH 100 -3.9 -6.18768 | AATCTGTGACTTACT TCATT GAAA AATGA TTTTTTTTGTCTTTT YPK_1786 1982928 - 1983470 + | fimbrial protein TERM 2049 1983574 - 1983556 - f 100 -10.3 -4.386 | opp_overlap 1983555 1983554 CAATCCGGCATAAAA TGGGAGC TTAGT GCTCCCA GCTTTATAAGTTCGA YPK_1787 1983606 - 1984385 + | pili assembly chaperone TERM 2050 1984434 - 1984383 - f 74 -10 -3.14261 | opp_overlap 1984383 1984398, overlap 1984398 CAAAAACTGACCCAA TAAAACTATAAAAAATACAAATTA AGGG TAATTTGTATTTTTTGCACTTTTA TATACTGCATTTAAT TERM 2051 1984383 - 1984434 + F 72 -10 -2.84999 | opp_overlap 1984383 1984398, overlap 1984398 CAAAAACTGACCCAA TAAAACTATAAAAAATACAAATTA AGGG TAATTTGTATTTTTTGCACTTTTA TATACTGCATTTAAT TERM 2052 1984419 - 1984398 - f 95 -7.5 -5.4588 | opp_overlap 1984383 1984398, overlap 1984383 TAAAACTATAAAAAA TACAAATTA AGGG TAATTTGTA TTTTTTGCACTTTTA TERM 2053 1984398 - 1984419 + F 90 -7.5 -5.15117 | opp_overlap 1984398 1984383, overlap 1984383 TAAAACTATAAAAAA TACAAATTA AGGG TAATTTGTA TTTTTTGCACTTTTA TERM 2054 1986763 - 1986753 - g 75 -5.4 -4.68994 | opp_overlap 1986756, overlap 1986755 AGTACTAGCCAAAAA GTTG CGC CAAC CGCAGGTGCTGTTGC YPK_1788 1984467 - 1987079 + | fimbrial biogenesis outer membrane usher protein YPK_1789 1987076 - 1988239 + | fimbrial protein YPK_1790 1988236 - 1989039 + | pili assembly chaperone YPK_1791 1990460 - 1989093 - | major facilitator transporter TERM 2055 1990044 - 1990019 - G 85 -11.3 -3.81691 | overlap 1990039 AAGACACAGCAACAA TCAAGGTATTG ATAC CAATACCTCGA CCAAGTTGGGCTCGA YPK_1792 1990827 - 1991993 + | oligogalacturonide lyase TERM 2056 1992006 - 1992032 + F 100 -12.4 -3.88498 | TAGCCGAGTTTTCCA TTAGCCTCTCTC TTA GAAAGAGGCTAA TTTGCTGTCTGCAAG YPK_1793 1992180 - 1992971 + | IclR family transcriptional regulator TERM 2057 1993074 - 1993094 + F 100 -9 -4.88407 | opp_overlap 1993074 CTCTTTTTATAAAAA CAGCTCCT CTGGC AGGGGCTG TTTTTCATTACATGA TERM 2058 1993094 - 1993074 - f 82 -6.8 -4.82901 | opp_overlap 1993074 CTCTTTTTATAAAAA CAGCTCCT CTGGC AGGGGCTG TTTTTCATTACATGA YPK_1794 1993338 - 1994189 + | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YPK_1795 1995794 - 1994403 - | sodium:dicarboxylate symporter TERM 2059 1994628 - 1994603 - G 71 -10.3 -2.86271 | overlap 1994600 CGGGCAGTACAATTA GGGCGGCGAAG GTTG CACCGCCACCC ACACCGGCAACACCC YPK_1796 1996546 - 1995998 - | membrane-bound metal-dependent hydrolase TERM 2060 1996188 - 1996149 - G 81 -11.2 -3.76641 | opp_overlap 1996146 AGCGGAATACTGAAA CGCCAGCGGCAGGGCCAC AATA GCGGCACACCGGCTGGCG TAATCATATCGGCCA TERM 2061 1996976 - 1996947 - R 100 -13.1 -5.53288 | gap 1, opp_overlap 1996954 1996954 GCTAAGCTAAAAAAA GGGAAAAG-TGACT GGG AGTCAACTTTTCCC CAAAATAATGCAGAG YPK_1797 1997754 - 1997044 - | oligogalacturonate-specific porin TERM 2062 1997853 - 1997841 - R 100 -6.3 -5.71983 | opp_overlap 1997840 1997833 1997841 GCAACCACAAAAAAA GAAAC AAT GTTTC ATTTGTTGTTGTCAT TERM 2063 1998025 - 1997988 - R 100 -14.4 -3.74693 | opp_overlap 1997988 1997993, overlap 1997993 TTTTATTTGATTAAA CAAAATAACCCCACCA AATAAA TGGCAGGGTTATTTTG TGACTTAAGTTAAAT TERM 2064 1997988 - 1998025 + r 71 -10 -2.57192 | opp_overlap 1997988 1997993, overlap 1997993 TTTTATTTGATTAAA CAAAATAACCCCACCA AATAAA TGGCAGGGTTATTTTG TGACTTAAGTTAAAT TERM 2065 1998020 - 1997993 - R 100 -8.5 -4.93877 | opp_overlap 1997988 1997993, overlap 1997988 TTTGATTAAACAAAA TAACCCCACCA AATAAA TGGCAGGGTTA TTTTGTGACTTAAGT YPK_1798 1999344 - 1998052 - | extracellular solute-binding protein TERM 2066 1998805 - 1998816 + g 80 -4.4 -5.30616 | opp_overlap 1998797 1998805 TACAACAGGGTAATA TTGG TCAC CCAA TTTTTCTTTAAATAC YPK_1799 2000487 - 1999360 - | ABC transporter related YPK_1800 2001421 - 2000501 - | binding-protein-dependent transport systems inner membrane component YPK_1801 2002304 - 2001414 - | binding-protein-dependent transport systems inner membrane component YPK_1802 2004012 - 2002345 - | Pectate disaccharide-lyase TERM 2067 2004146 - 2004162 + r 91 -3.7 -5.83211 | AAAGTGTGATCGAAG TCGGAAC GTT GTTTTGA TTTTTTATTTTGGTG TERM 2068 2004261 - 2004242 - R 100 -12.2 -6.01369 | opp_overlap 2004239 TAAATAATAAAAAAA GGCACAAC CAAA GTTGTGCC TGATGCGTTTTTGAG YPK_1803 2005118 - 2004357 - | 2-deoxy-D-gluconate 3-dehydrogenase TERM 2069 2004965 - 2004945 - G 71 -4.6 -4.59773 | opp_overlap 2004945 2004953 GGTCAGGCTGAAAAA GCGACGGC CCAGT GCAGTCAC TTGTTCGATAGTCTC TERM 2070 2005178 - 2005194 + r 70 -7.2 -3.77196 | opp_overlap 2005178 TTATTGGAGGTGAAA GCCGCC GTAAA GGTGGC TTTAATAGGTGATAC YPK_1804 2006046 - 2005210 - | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase YPK_1805 2006382 - 2006714 + | cupin 2 domain-containing protein TERM 2071 2006787 - 2006766 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPK_1806 2007969 - 2006761 - | transposase mutator type YPK_1807 2008208 - 2008017 - | transposase TERM 2072 2008285 - 2008314 + r 93 -10.7 -4.16842 | gap 1, overlap 2008286 TTACAGTCTCATATT CGGCGGCT-GAGTC ACT GACTCTGGCCGCCC TTTATTACCGCTGAC TERM 2073 2008286 - 2008313 + r 100 -14.2 -3.09784 | gap 1, overlap 2008285 TACAGTCTCATATTC GGCGGCT-GAGTC ACT GACTCTGGCCGCC CTTTATTACCGCTGA YPK_1808 2009174 - 2008509 - | HAD family hydrolase TERM 2074 2009521 - 2009507 - H 76 -10 -3.36195 | overlap 2009505 2009503 2009518 TAAATAGCAAACATA GCGGTA AAG TACCGC ACAACGTGTGGATGT YPK_1809 2009585 - 2010139 + | hypothetical protein YPK_1811 2011143 - 2010268 - | fructosamine kinase YPK_1810 2010175 - 2010363 + | hypothetical protein YPK_1812 2012340 - 2011447 - | ABC-3 protein TERM 2075 2012176 - 2012159 - G 75 -5.5 -4.67755 | ATACCGAGCCAAAAA GCCAGAA CAAT CCCTGGC AGCACAGCATGAGAA YPK_1813 2013221 - 2012337 - | ABC-3 protein YPK_1814 2014111 - 2013221 - | ABC transporter related YPK_1815 2015076 - 2014108 - | periplasmic solute binding protein TERM 2076 2015305 - 2015318 + G 83 -6.7 -4.89477 | GAATTCAAAAGTCGG TTGCC TAAT GGCAA TTTTATTGTTGGCGG TERM 2077 2015399 - 2015388 - g 81 -3.6 -5.40072 | GGTGGCTGAAAAAAA CGCC ACAG GGCA ATTCTCTTAACGTAG YPK_1816 2015288 - 2015950 + | lytic transglycosylase catalytic YPK_1817 2016755 - 2016072 - | multiple antibiotic resistance (MarC)-related protein YPK_1818 2017074 - 2017325 + | hypothetical protein TERM 2078 2017445 - 2017418 - T 100 -13.5 -5.19275 | AGCCAGAAAATAAAA CGCCCCGATTG AATAAA CAATCAGGGCG ACGTTCCAGTAACCA YPK_1819 2018296 - 2018084 - | hypothetical protein TERM 2079 2018154 - 2018136 - G 85 -3 -5.56568 | overlap 2018138 ACACCATCAAAAAAA CGGCCTTT CGA AACGGCAG ACATAAAGTTTTGAT TERM 2080 2020382 - 2020370 - g 79 -3.3 -5.32565 | CAAGTAACCAAAAAA CTGCA AGA TGCGG GTATTAGAGCAAAAG YPK_1820 2018687 - 2020615 + | threonyl-tRNA synthetase YPK_1821 2020820 - 2021170 + | initiation factor 3 YPK_1822 2021267 - 2021464 + | ribosomal protein L35 YPK_1823 2021502 - 2021858 + | ribosomal protein L20 TERM 2081 2021889 - 2021871 - f 78 -10.3 -3.2496 | opp_overlap 2021871, overlap 2021866 TAAGTCAGAATTGAA GAGGGAG CTTGT CTCCCTC TTTTAATCTTTGCAC TERM 2082 2021871 - 2021889 + F 100 -10.3 -4.49756 | opp_overlap 2021871 2021866 TAAGTCAGAATTGAA GAGGGAG CTTGT CTCCCTC TTTTAATCTTTGCAC TERM 2083 2022048 - 2022065 + F 100 -8.4 -6.04324 | AAAAATAGCGCCGAA GCCTCC CATCGT GGAGGC TTTTTTGTTTTTTAC TERM 2084 2022473 - 2022462 - g 75 -3.6 -5.09895 | overlap 2022463 TATCTAGGTAAAAAA GGCC ACTT GACC CTTCAAATGACATCG TERM 2085 2023215 - 2023231 + G 75 -8 -4.29176 | AATGTCGGTATCGAT CCTGAG ATTTA CTCAGG TTTTGCATTCGGTAT YPK_1824 2022357 - 2023340 + | phenylalanyl-tRNA synthetase, alpha subunit YPK_1825 2023354 - 2025741 + | phenylalanyl-tRNA synthetase, beta subunit YPK_1826 2025746 - 2026042 + | integration host factor, alpha subunit TERM 2086 2026076 - 2026061 - f 100 -11.8 -4.52589 | opp_overlap 2026061 GTTTCCGACATAAAA GGCCGC GCAA GCGGCC TTTTTCTTTTCAAGA TERM 2087 2026061 - 2026076 + F 100 -11.8 -5.45802 | opp_overlap 2026061 GTTTCCGACATAAAA GGCCGC GCAA GCGGCC TTTTTCTTTTCAAGA YPK_1827 2026376 - 2026834 + | hypothetical protein TERM 2088 2026851 - 2026895 + F 75 -8.7 -3.63515 | opp_overlap 2026849 2026851 CGAGCATAACAAACA GTTGCTAACTTTACTTGTTTG CTA TGACCAAGCAGAGTTAGCGAC TTATTAGCAATAAAG YPK_1828 2027061 - 2028068 + | transport system permease protein YPK_1829 2028138 - 2028692 + | glutathione peroxidase YPK_1830 2028717 - 2029475 + | ABC transporter related YPK_1831 2029825 - 2030979 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 2089 2031208 - 2031226 + G 81 -11 -3.76492 | opp_overlap 2031208 TAATTATGGTCAACA TTCCGCCA TTA TGGCGGGA TTTAATCAGGTTAGC YPK_1832 2030966 - 2031949 + | glycosyl transferase family protein TERM 2090 2032055 - 2032065 + G 87 -6.8 -5.10767 | overlap 2032057 ATACTGATAATCCTG GCGA GAA TCGC TTTTTCTCTTCGGTC YPK_1833 2031946 - 2033949 + | NAD-dependent epimerase/dehydratase TERM 2091 2034082 - 2034099 + G 80 -6.9 -4.7254 | opp_overlap 2034080, overlap 2034084 GGCCGGATAATATGG GACGCCA TTTA TGGCGCC TTTTTCGTCCGCGCT YPK_1834 2033946 - 2034851 + | polysaccharide deacetylase TERM 2092 2035047 - 2035037 - g 83 -8.2 -4.59773 | opp_overlap 2035036 2035034 2035037 CGTTATTTTGAAAAA CCGG TCG CCGG GTATTGGTTTAATAA YPK_1835 2034848 - 2036512 + | glycosyl transferase family protein TERM 2093 2036582 - 2036630 + G 87 -13.1 -3.34895 | opp_overlap 2036599 GTCAAAAACAGGCTG CGCAGTGTTGGGAGCAACCGCAG GCC CGGCGGTTGAATCTGACATTGCG TTGGTTGGCGATAGC TERM 2094 2036703 - 2036730 + G 85 -9.9 -4.32571 | ATTGCAGCAACTCCC GCTGAGCGTGG CCTATC CTATGCTCAGC TTTAATTTTGTGTTG YPK_1836 2036509 - 2036853 + | hypothetical protein YPK_1837 2036850 - 2037236 + | hypothetical protein YPK_1838 2037516 - 2037980 + | NLP/P60 protein YPK_1839 2038105 - 2039121 + | lipoyltransferase and lipoate-protein ligase YPK_1840 2039173 - 2040636 + | hypothetical protein TERM 2095 2040755 - 2040707 - T 95 -7.8 -5.00616 | gap 1, opp_overlap 2040721, overlap 2040686 2040709 TTTTTTCGGAAAAAA TAGGGATAGA-AAAAGTTAAC CCGACAAC GTTAACTTTTCCCTATCCCGA AGGTATTCATTTAAT TERM 2096 2040753 - 2040709 - T 91 -10.4 -4.13561 | gap 1, opp_overlap 2040721, overlap 2040686 2040707 TTTTCGGAAAAAATA GGGATAGA-AAAAGTTAAC CCGACAAC GTTAACTTTTCCCTATCCC GAAGGTATTCATTTA YPK_1841 2041851 - 2040805 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2097 2041736 - 2041750 + g 74 -10 -3.50393 | TTCTCTATTCGTTTA CGTGAC GCT GTCACG TTATCTGCAATAACC YPK_1842 2042829 - 2042008 - | hypothetical protein TERM 2098 2044681 - 2044693 + G 71 -4.7 -4.54727 | overlap 2044682 2044689 TGATGAATGTTGGCA ACCCG GAC CGGGC TTTTGATTTCGCCCG YPK_1843 2043204 - 2045588 + | phosphoenolpyruvate synthase TERM 2099 2045671 - 2045690 + T 100 -10 -5.47399 | overlap 2045684 TATAGGTATTCATCA TCCGCAGC TTAG GTTGCGGA TTTTTTTGCAATTAA TERM 2100 2045844 - 2045825 - T 100 -9.3 -6.21477 | AATAGCAAAAAAAAA GCCTGTC TTAGGT GACAGGC AAAGACTACACACAG TERM 2101 2046014 - 2046004 - T 86 -2.6 -5.7946 | CTCTGAATAAAAAAA TTAT TAA ATAA GAAGTAGAATGAGAT TERM 2102 2046184 - 2046150 - T 100 -13.7 -3.06087 | overlap 2046153 2046178 AATATATGCTGAATA TAAGGGGTTCGGCAG AATAA CCACCAAACCCCTTA GGGTTAAAGCTCTTC TERM 2103 2046181 - 2046153 - T 84 -11 -3.67052 | overlap 2046150 2046178 ATATGCTGAATATAA GGGGTTCGGCAG AATAA CCACCAAACCCC TTAGGGTTAAAGCTC YPK_1844 2047291 - 2046188 - | hypothetical protein TERM 2104 2047946 - 2047961 + G 77 -4 -5.03747 | overlap 2047948 AGGCACCGGGTGTCA TTCAGT CGGT ACTGGA TTTTTTGGACGCTTT TERM 2105 2047996 - 2047986 - g 74 -6.8 -4.4078 | opp_overlap 2047971 CGCTTTGAAGCAAAA CGGT TTT ACCG GCGATACTGCTACTA TERM 2106 2049877 - 2049930 + G 76 -11.8 -2.90763 | opp_overlap 2049858 CGCAACAGTTGGCAG GCCAGTCAAGGGGTCTATGATTTC TCACAT GAAGTCAAAGAATCCATGGCTGGC TGTCTGGCGTGTAAA TERM 2107 2050632 - 2050607 - g 95 -13.3 -3.87075 | ACGAGTGGTTACAAA CGGCTCTGGCT GATC AGCCAGAGCAG CAAATCAGTGGTGAG YPK_1845 2047912 - 2050968 + | FAD linked oxidase domain-containing protein YPK_1846 2051106 - 2051522 + | thioesterase superfamily protein TERM 2108 2051512 - 2051530 + F 78 -5.3 -5.03314 | gap 1 TAACGATCGCCGTAT TGACG-CG CTAA CGTCGTCA TTTTTTGCCAATAGC TERM 2109 2052262 - 2052274 + G 71 -6.9 -4.28977 | opp_overlap 2052261 TCGGCGTCAAACAGT CCGGT TGT GCCGG TTTTGCCTATGTTAT YPK_1847 2052117 - 2052488 + | FeS assembly scaffold SufA TERM 2110 2053297 - 2053283 - g 79 -11.4 -3.1355 | GTCAGCTATATCGAA GGGTGC TCG GCACCC GTGCGCGACAGCTAT TERM 2111 2053380 - 2053354 - g 70 -2.3 -4.83615 | gap 1, overlap 2053341 CATTCTGCACAAAAA TGCAGAGGTGAA GTAC TCCACCG-TGCA AAACTGGTTTGCAGG TERM 2112 2053858 - 2053845 - g 78 -5.3 -4.90906 | opp_overlap 2053845, overlap 2053836 CCACAACATCAAAAA TTGGT GATG ACCAA CTGTTCTATTGCTTG YPK_1848 2052503 - 2054014 + | FeS assembly protein SufB YPK_1849 2054199 - 2054945 + | FeS assembly ATPase SufC YPK_1850 2054920 - 2056245 + | FeS assembly protein SufD YPK_1851 2056242 - 2057462 + | SufS subfamily cysteine desulfurase TERM 2113 2057495 - 2057519 + F 91 -6.4 -5.43553 | opp_overlap 2057495 ACAGGCAACACCAAA GCCGACTATT CTTTC AGCAGTCGGC TTTTATTTTTTACGT YPK_1852 2057551 - 2057973 + | Fe-S metabolism associated SufE YPK_1853 2058244 - 2059308 + | ErfK/YbiS/YcfS/YnhG family protein TERM 2114 2059315 - 2059359 + T 90 -11.6 -3.66556 | gap 1, opp_overlap 2059353 2059357, overlap 2059316 AATAACTAATCACTT GTCTGTGCTTTACCGTGGTGG AGAT CCATCGTGGTAAAGC-CAGAA TTGTATTCCGCGCTT TERM 2115 2059316 - 2059358 + T 100 -15.1 -2.79452 | gap 1, opp_overlap 2059353 2059357, overlap 2059315 ATAACTAATCACTTG TCTGTGCTTTACCGTGGTGG AGAT CCATCGTGGTAAAGC-CAGA ATTGTATTCCGCGCT TERM 2116 2059646 - 2059628 - T 100 -14.6 -5.44119 | opp_overlap 2059628 CGTAGGGCAAAAAAA TGGCGCAC AAT GTGCGCCA TTTTTCATTCAGGAA TERM 2117 2059628 - 2059646 + T 100 -14.6 -4.8622 | opp_overlap 2059628 CGTAGGGCAAAAAAA TGGCGCAC AAT GTGCGCCA TTTTTCATTCAGGAA YPK_1854 2059904 - 2059668 - | LPP repeat-containing protein TERM 2118 2060199 - 2060170 - R 100 -10.8 -5.055 | opp_overlap 2060170 2060175, overlap 2060175 GCAAGCTTTAAAAAA GAAAACGCCGCT ATAGAG AGCGGCGTTTTA ATTATTGAACAATAA TERM 2119 2060170 - 2060199 + r 77 -10.8 -2.77344 | opp_overlap 2060170 2060175, overlap 2060175 GCAAGCTTTAAAAAA GAAAACGCCGCT ATAGAG AGCGGCGTTTTA ATTATTGAACAATAA TERM 2120 2060194 - 2060175 - R 100 -10.7 -5.42198 | opp_overlap 2060170 2060175, overlap 2060170 CTTTAAAAAAGAAAA CGCCGCT ATAGAG AGCGGCG TTTTAATTATTGAAC TERM 2121 2060175 - 2060194 + r 100 -10.7 -4.56133 | opp_overlap 2060175 2060170, overlap 2060170 CTTTAAAAAAGAAAA CGCCGCT ATAGAG AGCGGCG TTTTAATTATTGAAC YPK_1855 2061637 - 2060225 - | pyruvate kinase TERM 2122 2060523 - 2060533 + g 73 -3.2 -4.89393 | GCGACCACAATCACT TTGG CTT CCAG TTTTTCTGCGGTTTC TERM 2123 2062805 - 2062815 + r 82 -6.8 -4.87803 | overlap 2062804 ATCCAGATGTTGTTG GGGA GAC TCCC TTTTATTTGAGACTA YPK_1856 2064267 - 2062894 - | MATE efflux family protein YPK_1857 2064516 - 2065172 + | riboflavin synthase, alpha subunit TERM 2124 2065213 - 2065184 - T 86 -5.7 -5.3236 | opp_overlap 2065184 2065187 2065189 2065191, overlap 2065187 ATAACCTACAAAAAA TAAGACAGGGG TTTTTATC CCCCTGTCTCC TATCTGAGGTTAGCG TERM 2125 2065210 - 2065187 - T 100 -9.6 -4.73105 | opp_overlap 2065184 2065187 2065189 2065191, overlap 2065184 ACCTACAAAAAATAA GACAGGGG TTTTTATC CCCCTGTC TCCTATCTGAGGTTA YPK_1858 2066374 - 2065223 - | cyclopropane-fatty-acyl-phospholipid synthase YPK_1859 2068056 - 2066854 - | Bcr/CflA subfamily drug resistance transporter TERM 2126 2068795 - 2068815 + Gr 74 -4.5 -4.82128 | overlap 2068796 CATAGGGGCGACCCG TGCCATCCC AGT GGGTGGGCG TTTTGTCTTTCGTGA YPK_1861 2069381 - 2069220 - | hypothetical protein YPK_1860 2068346 - 2069278 + | LysR family transcriptional regulator TERM 2127 2069334 - 2069314 - GT 84 -9.8 -3.85092 | opp_overlap 2069317, overlap 2069317 2069327 ACCATCGATAGCAAA TAACCGCA GGGAA TGCGGTTA TCCGAATCGGGCCGG TERM 2128 2069331 - 2069317 - GT 72 -7.1 -4.05208 | opp_overlap 2069317, overlap 2069314 2069327 ATCGATAGCAAATAA CCGCA GGGAA TGCGG TTATCCGAATCGGGC YPK_1862 2070406 - 2069381 - | LacI family transcription regulator TERM 2129 2069678 - 2069695 + g 83 -6.9 -4.9725 | opp_overlap 2069664 2069678, overlap 2069681 ATCGCCGCCACAGAA CACCGCC GTTG GGCGATG TTTTTGTGTCAGAAT TERM 2130 2069695 - 2069678 - G 71 -9.1 -3.48395 | opp_overlap 2069678 2069681, overlap 2069664 ATCGCCGCCACAGAA CACCGCC GTTG GGCGATG TTTTTGTGTCAGAAT TERM 2131 2070880 - 2070858 - R 100 -16.4 -3.6849 | opp_overlap 2070858, overlap 2070861 AGTGAACGGTAATAA TAAGGGCGGT TAA ACCGCCCTTA TTTATCTTATCGATG TERM 2132 2070858 - 2070880 + r 100 -16.4 -4.28188 | opp_overlap 2070858 2070861 AGTGAACGGTAATAA TAAGGGCGGT TAA ACCGCCCTTA TTTATCTTATCGATG TERM 2133 2070877 - 2070861 - R 100 -13.7 -3.97139 | opp_overlap 2070858, overlap 2070858 GAACGGTAATAATAA GGGCGGT TAA ACCGCCC TTATTTATCTTATCG YPK_1863 2071511 - 2070933 - | superoxide dismutase TERM 2134 2071324 - 2071336 + g 85 -10.5 -4.1413 | opp_overlap 2071322 2071320 2071324 GCATTATTAAACACA CCGCC ATT GGCGG TTTTCACGATCTCTT TERM 2135 2071336 - 2071324 - G 75 -10.5 -3.31162 | opp_overlap 2071324, overlap 2071322 2071320 GCATTATTAAACACA CCGCC ATT GGCGG TTTTCACGATCTCTT YPK_1864 2072738 - 2071887 - | NLP/P60 protein TERM 2136 2072852 - 2072874 + H 88 -7 -5.1287 | opp_overlap 2072852 2072858, overlap 2072855 GATATTGTGAGAAAA CATTAATGGC GTT GCCATTGTTG TTTTTTCACTCTGAG TERM 2137 2072855 - 2072871 + H 81 -7.3 -4.65666 | opp_overlap 2072852 2072858, overlap 2072852 ATTGTGAGAAAACAT TAATGGC GTT GCCATTG TTGTTTTTTCACTCT YPK_1865 2072857 - 2073078 + | hypothetical protein YPK_1866 2073178 - 2073528 + | glutaredoxin-like protein TERM 2138 2073629 - 2073612 - Tf 79 -8.4 -4.15703 | TGTGATAAATAAGAA GGTGGC GTAATG GCCACC TCAGACTGCTGACAA TERM 2139 2073718 - 2073692 - Tf 84 -10.1 -3.82218 | gap 1, opp_overlap 2073701, overlap 2073693 2073708 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2140 2073719 - 2073693 - Tf 72 -10.1 -2.88849 | gap 1, opp_overlap 2073701, overlap 2073692 2073708 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2141 2073797 - 2073814 + GT 100 -8.4 -5.26875 | TTGTCAATAACCTCA GGTGGC GTAATG GCCACC TTTTTTAATTACAAG YPK_1868 2074517 - 2073837 - | ribonuclease T YPK_1867 2073731 - 2073892 + | hypothetical protein TERM 2142 2074585 - 2074568 - TR 87 -8.4 -4.48987 | opp_overlap 2074567 TTGTGATAAGTAAAA GGCACC GTCCGA GGTGCC CTTAAGTTAATCAGT YPK_1869 2075003 - 2074596 - | lactoylglutathione lyase TERM 2143 2074690 - 2074672 - G 71 -4.6 -4.64676 | GGATCTTCAACAAAA GCAATAAT GGT ATTACCGC CTTTTACCGGGCCAG YPK_1870 2075276 - 2076280 + | Rhs family protein-like protein YPK_1871 2077598 - 2076501 - | NADH:flavin oxidoreductase/NADH oxidase YPK_1872 2078285 - 2077686 - | TetR family transcriptional regulator TERM 2144 2078348 - 2078329 - R 100 -5.7 -5.80364 | AGGTCAAGAAAAAAA TGCCAAC CAAGGC GCTGGCA TCAAGGCTATGGTCT YPK_1873 2080145 - 2078508 - | hypothetical protein TERM 2145 2080020 - 2080009 - G 83 -4.4 -5.40072 | opp_overlap 2080009 GTTGCTGCAAAAAAA TAGC TGTC GCTA TTGTCGAATCGGATC TERM 2146 2080323 - 2080336 + G 77 -3.1 -5.27779 | overlap 2080319 TAGGAGGCAGCGTGG CTCAG CAAC TTGAG TTTTTTGATATTCCC TERM 2147 2080359 - 2080390 + G 100 -14.6 -4.51097 | gap 1, overlap 2080384 ATATTCCCAGCCCCT GCCGCGGT-ATCTGT CAA ACAGATGACCGTGGC TTTTGTCGTGGTTGC YPK_1874 2080193 - 2080558 + | hypothetical protein YPK_1875 2080690 - 2081586 + | aldo/keto reductase TERM 2148 2081594 - 2081622 + F 100 -8.9 -4.67942 | TCCCTTAATCTTTCT CTACGCCAATC GCGCTCA GACTGGCGTAG TTTTACTTTCTTCGG TERM 2149 2082222 - 2082242 + F 81 -5.5 -5.24531 | opp_overlap 2082225, overlap 2082225 TTAATCCTTAAGAGG TAATGTATC GTT GATACATCA TTTTTTCTAAAGAAT YPK_1876 2082384 - 2082815 + | MarR family transcriptional regulator TERM 2150 2082907 - 2082877 - T 100 -14.1 -5.34555 | opp_overlap 2082881, overlap 2082881 CCACAGTACAAAAAA CAAACCGGGGTTC GCAAT GAACCCCGGTTTT TACTGTTCTGATTTA TERM 2151 2082881 - 2082903 + T 100 -15.6 -4.90906 | opp_overlap 2082877 2082881 AGTACAAAAAACAAA CCGGGGTTCG CAA TGAACCCCGG TTTTTACTGTTCTGA TERM 2152 2082903 - 2082881 - T 100 -14.9 -5.1471 | opp_overlap 2082881, overlap 2082877 AGTACAAAAAACAAA CCGGGGTTC GCAAT GAACCCCGG TTTTTACTGTTCTGA YPK_1877 2083426 - 2082959 - | 17 kDa surface antigen YPK_1878 2083982 - 2085094 + | hypothetical protein YPK_1879 2085152 - 2085466 + | hypothetical protein YPK_1880 2085488 - 2086210 + | pyridoxamine 5'-phosphate oxidase TERM 2153 2087111 - 2087097 - g 71 -8.6 -3.74693 | GCCGATGGCACTAAA TTCGGT AAA ACCGAA GGGGGTGCAGTCTGG TERM 2154 2087282 - 2087267 - g 76 -2.5 -5.21506 | overlap 2087277 AGAAGAAGATAAAAA CAGTG GTAAAG CACCG CGCGCGCAATATGTT YPK_1881 2086392 - 2087666 + | tyrosyl-tRNA synthetase TERM 2155 2087680 - 2087701 + F 87 -5.1 -5.52384 | opp_overlap 2087683, overlap 2087683 AAGCGTAAAATAAGA GAAGGGGCA GAAA TGTCCCTTA TTTTTTTGCTGAGAC TERM 2156 2087683 - 2087698 + F 82 -6.8 -4.8487 | opp_overlap 2087683, overlap 2087680 CGTAAAATAAGAGAA GGGGCA GAAA TGTCCC TTATTTTTTTGCTGA YPK_1882 2087821 - 2088681 + | pyridoxal kinase TERM 2157 2088693 - 2088723 + T 100 -15.6 -3.51694 | opp_overlap 2088690, overlap 2088690 GTAATCTAACCATTT TCAATTGCCCCC TAGTGAT GGGGGCAATTGA TTGATTCTCATTATT YPK_1883 2089346 - 2088741 - | glutathione S-transferase domain-containing protein TERM 2158 2089456 - 2089485 + r 72 -9.3 -3.16553 | opp_overlap 2089450, overlap 2089455 GGGGCAATACAAGTC CTACAGCGGTG ATGATTTC CCCCGCTGTAG TGTATTGATAGTTGT YPK_1884 2089854 - 2089591 - | hypothetical protein TERM 2159 2089966 - 2089954 - R 74 -4.8 -4.84492 | TTAATGACAATAAAA GCCT GTTAG AGGC TCCAAGGCTGATGGA YPK_1885 2090690 - 2090100 - | hypothetical protein TERM 2160 2090916 - 2090935 + r 81 -9.2 -3.77607 | opp_overlap 2090917, overlap 2090917 CTAACTAGCACTAAA AGCGCTCC CGCA GGAGCGCG TTTAGTCAGCTTATT TERM 2161 2090934 - 2090917 - R 100 -12.7 -4.33105 | opp_overlap 2090916 2090917 TAACTAGCACTAAAA GCGCTCC CGCA GGAGCGC GTTTAGTCAGCTTAT TERM 2162 2090917 - 2090934 + r 89 -12.7 -2.85841 | opp_overlap 2090917, overlap 2090916 TAACTAGCACTAAAA GCGCTCC CGCA GGAGCGC GTTTAGTCAGCTTAT YPK_1886 2092481 - 2090946 - | amino acid/peptide transporter YPK_1887 2094375 - 2093095 - | hypothetical protein TERM 2163 2094725 - 2094706 - R 100 -12.2 -3.96534 | overlap 2094701 GTTAAAAGAAGATAA CCGCTATC AAAA GATAGCGG GGAGGTTAACCACCG YPK_1888 2095581 - 2094766 - | ABC transporter related YPK_1889 2096573 - 2095581 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2164 2096204 - 2096191 - G 78 -8.1 -4.42238 | opp_overlap 2096192 TTACGCCAATGAAAA CGCTG CCAC CAGCG GCCTTTATATGTCCA YPK_1890 2097463 - 2096573 - | binding-protein-dependent transport systems inner membrane component YPK_1891 2098415 - 2097450 - | binding-protein-dependent transport systems inner membrane component YPK_1892 2100055 - 2098412 - | extracellular solute-binding protein TERM 2165 2100432 - 2100446 + r 70 -5.8 -4.28361 | ATTTACAATTGATAT TGATAA GTA TTATCA TTTTGATGCGATTCA TERM 2166 2100533 - 2100550 + r 100 -8.4 -5.81032 | CTTCCAGTATTTTAA GCCAGC TCGGGT GCTGGC TTTTTTTTACCCTTC YPK_1893 2101641 - 2100613 - | sigma-54 dependent trancsriptional regulator YPK_1894 2101886 - 2102551 + | phage shock protein A, PspA YPK_1895 2102713 - 2102940 + | phage shock protein B TERM 2167 2102987 - 2102967 - g 82 -5.3 -5.1675 | overlap 2102969 TTAGGCAGTAAAAAA CTGTACCGG GTA CCGGAAGAG GGCATGATCAAAGGG TERM 2168 2103053 - 2103074 + G 74 -3.1 -5.09173 | gap 1, overlap 2103054 AGTACGGTTGGTTCG C-GTGATAAT GGT GTTATCACTG TTTTTTGGCCTATTC TERM 2169 2103054 - 2103072 + G 71 -6.8 -4.16351 | overlap 2103053 GTACGGTTGGTTCGC GTGATAAT GGT GTTATCAC TGTTTTTTGGCCTAT YPK_1896 2102940 - 2103299 + | phage shock protein C, PspC YPK_1897 2103384 - 2103626 + | phage shock protein PspD TERM 2170 2103904 - 2103935 + G 73 -7.3 -4.1899 | gap 1, opp_overlap 2103888 TGGCCAACGCCGACC CGTGGCGTCAG-CG AAATC CGTCTGGCGTTACG TTTTCGCTCCAGTGA YPK_1898 2103607 - 2105004 + | protein of unknown function DUF463 YcjX family protein TERM 2171 2105641 - 2105623 - g 73 -8.8 -3.85817 | opp_overlap 2105636 2105637 AGGCTCGGGCAGAAA TCAGCCGC TAT GCTGCTGA ATCAGCGTTGATGAT YPK_1899 2105001 - 2106062 + | hypothetical protein YPK_1900 2106530 - 2106072 - | RES domain-containing protein YPK_1901 2107038 - 2106592 - | hypothetical protein YPK_1902 2107375 - 2108952 + | transcriptional regulator, TyrR TERM 2172 2108999 - 2109023 + T 88 -10 -4.18494 | gap 1, opp_overlap 2108999 AAGAGTAATAAAAAA CGGCTGTACCC GAGT GGG-GCAGCCG TTTTGAGTCACGATA TERM 2173 2109023 - 2108999 - T 100 -7.8 -5.54885 | gap 1, opp_overlap 2108999 AAGAGTAATAAAAAA CGGCTGTACCC GAGT GGGG-CAGCCG TTTTGAGTCACGATA YPK_1903 2109636 - 2109133 - | redoxin domain-containing protein TERM 2174 2109742 - 2109722 - H 70 -2.5 -5.01732 | overlap 2109723 AAGTTCGCTAAAAAA CCCGTTTAA AGA CTTAACGGA TAAACGTATGAGGGT TERM 2175 2109764 - 2109748 - H 71 -9.5 -2.98368 | overlap 2109747 ACTTAACGGATAAAC GTATGAG GGT CTCATAC CTAAGCTAAAACTGT YPK_1904 2109799 - 2110773 + | mandelate racemase/muconate lactonizing protein YPK_1905 2111585 - 2110815 - | peptidase M14 carboxypeptidase A YPK_1906 2111963 - 2113579 + | extracellular solute-binding protein TERM 2176 2113610 - 2113640 + F 93 -9 -4.54323 | opp_overlap 2113612, overlap 2113612 2113616 TGTTTTTAACTAATT AACAGAGGCGGATT TTA AATCCGCCTTTGCA TTTATTCTTGTCCTT TERM 2177 2113638 - 2113612 - f 100 -13.8 -3.45366 | opp_overlap 2113610 2113612 2113616 TTTTTAACTAATTAA CAGAGGCGGATT TTA AATCCGCCTTTG CATTTATTCTTGTCC TERM 2178 2113612 - 2113638 + F 100 -16 -2.57496 | opp_overlap 2113612, overlap 2113610 2113616 TTTTTAACTAATTAA CAGAGGCGGATT TTA AATCCGCCTTTG CATTTATTCTTGTCC TERM 2179 2113616 - 2113634 + F 100 -13.2 -3.95772 | opp_overlap 2113612, overlap 2113612 2113610 TAACTAATTAACAGA GGCGGATT TTA AATCCGCC TTTGCATTTATTCTT YPK_1907 2113792 - 2114805 + | Mg2 transporter protein CorA family protein TERM 2180 2115003 - 2115026 + T 100 -14 -5.60993 | ATTTAATTGTTACGG TGCCGATGTT GAAA AACATCGGCA TTTTTTTGTGCGCCG YPK_1908 2116018 - 2115179 - | MerR family transcriptional regulator TERM 2181 2115817 - 2115831 + g 91 -7.2 -5.26875 | opp_overlap 2115817 TGGATGAGTAATCCA TCAAGA TGC TCTTGA TTTTTTCATTAGAAA TERM 2182 2116213 - 2116187 - RH 80 -8.7 -3.9749 | gap 1, overlap 2116188 AGGCAGAAGAGTAAA GCGTCCGCGCCA GTAG TGGCGCGGAT-C TAGCCCCCATGGAAG TERM 2183 2116327 - 2116304 - gR 71 -8.8 -3.38991 | opp_overlap 2116305 2116307, overlap 2116302 2116307 ACTTTGCCAATAACA TCAGTGGGCC ATTT GGCCCACTAT TTTTACTGGCTATGA TERM 2184 2116305 - 2116326 + Gr 100 -10.1 -4.76041 | opp_overlap 2116304 2116302 2116307, overlap 2116307 CTTTGCCAATAACAT CAGTGGGCC ATTT GGCCCACTA TTTTTACTGGCTATG TERM 2185 2116324 - 2116307 - gR 89 -12.7 -2.85545 | opp_overlap 2116307 2116305, overlap 2116304 2116302 TTGCCAATAACATCA GTGGGCC ATTT GGCCCAC TATTTTTACTGGCTA TERM 2186 2116307 - 2116324 + Gr 100 -12.7 -3.99327 | opp_overlap 2116304 2116302 2116307, overlap 2116305 TTGCCAATAACATCA GTGGGCC ATTT GGCCCAC TATTTTTACTGGCTA YPK_1910 2117334 - 2116330 - | hypothetical protein YPK_1909 2116222 - 2116431 + | hypothetical protein YPK_1911 2117429 - 2117554 + | hypothetical protein YPK_1912 2118546 - 2117605 - | PP-loop domain-containing protein TERM 2187 2117630 - 2117643 + g 73 -2.3 -5.09685 | TCCAACACATCAAGG CGTAC TGGT GGACG TTTTTCTGTGTCTTC TERM 2188 2118476 - 2118486 + g 83 -8.2 -4.64144 | overlap 2118461 GCTTGGCCGACGTTA CGGC GCA GCCG TTTTTGCAGCTTGTT TERM 2189 2118796 - 2118771 - R 100 -13.4 -5.1167 | opp_overlap 2118767 AAGGTAATAGAAAAA GCCAGTTAGC GGTTTA GCTAACTGGC TCAGTAAATTGCACG YPK_1913 2122364 - 2118831 - | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 2190 2119918 - 2119903 - G 75 -10.4 -3.40403 | opp_overlap 2119901 GGTGTTTCACCACAA CCGGAG CAGG CTCCGG AATATTCGAACAGCG YPK_1914 2122843 - 2123175 + | small multidrug resistance protein YPK_1915 2123894 - 2123235 - | MgtC/SapB transporter YPK_1916 2124197 - 2124520 + | putative lipoprotein YPK_1917 2125030 - 2124578 - | protein of unknown function DUF306 Meta and HslJ YPK_1918 2126092 - 2125100 - | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 2191 2128720 - 2128734 + G 79 -11.4 -3.13908 | opp_overlap 2128717 GTGAGAGCAATACTG TCGCCG GTG CGGCGA TTGACTGGTTGCGTT YPK_1919 2126358 - 2129072 + | hypothetical protein YPK_1920 2129069 - 2129263 + | putative lipoprotein YPK_1921 2129273 - 2129644 + | hypothetical protein YPK_1922 2131221 - 2129830 - | mannitol dehydrogenase domain-containing protein TERM 2192 2130516 - 2130539 + g 71 -3.1 -5.00616 | gap 1, overlap 2130522 ATGATTCCCCCATCA CCGG-AGCGT TATCT ACGATACCGG TTTTTTCCAACACCC TERM 2193 2131282 - 2131293 + H 70 -7.2 -3.86283 | ATAAATTCAATATTT GGGC ATTT GCCC TTTCGTGTAGGTTAA YPK_1923 2131431 - 2132387 + | DeoR family transcriptional regulator TERM 2194 2132409 - 2132392 - T 100 -14.1 -5.35222 | AAAAGGCATAAAAAA GCGCGCC GGTT GGCGCGC AATCATCACATGGCT YPK_1924 2133113 - 2132508 - | NAD(P)H dehydrogenase (quinone) TERM 2195 2133197 - 2133216 + H 72 -6.4 -4.3351 | overlap 2133199 TTTTGCTACCAGTGA TAGCGCAA TATT TTGCGCTC TTTGTTCGATTTTAT TERM 2196 2133199 - 2133214 + H 78 -9 -3.75005 | overlap 2133197 TTGCTACCAGTGATA GCGCAA TATT TTGCGC TCTTTGTTCGATTTT TERM 2197 2135802 - 2135812 + G 71 -8.2 -3.63694 | AAGGTGACTGGCAGA CGCG GCA CGCG TTCTTCCGAATGAAT TERM 2198 2135880 - 2135867 - g 75 -8.1 -4.19624 | opp_overlap 2135865 2135867 GAGTTGGAACACAAA TCCCG TCGG CGGGA TATTCTGGTCGATGA YPK_1925 2133536 - 2137423 + | ATP-dependent helicase HrpA TERM 2199 2137433 - 2137473 + F 100 -8.4 -5.48514 | gap 1, overlap 2137436 GTCTGATTGATGCCC CTATTCGACGCCTGAG-CT ATCT AGACTTAGGCGTCGAATTC TTTTTATTTCTTAGT TERM 2200 2137436 - 2137470 + F 100 -14.5 -4.78345 | gap 1, overlap 2137433 TGATTGATGCCCCTA TTCGACGCCTGAG-CT ATCT AGACTTAGGCGTCGAA TTCTTTTTATTTCTT YPK_1926 2137762 - 2138091 + | hypothetical protein YPK_1927 2138088 - 2138411 + | XRE family transcriptional regulator YPK_1928 2139303 - 2138467 - | peptidase S1 and S6 chymotrypsin/Hap TERM 2201 2139552 - 2139569 + r 93 -12.7 -3.09208 | opp_overlap 2139552, overlap 2139554 ACTCCTGATAAAAAA CACCCGG AGAA CCGGGTG TTGAGTGAATCATTT TERM 2202 2139569 - 2139552 - R 100 -12.7 -5.24531 | opp_overlap 2139552 2139554 ACTCCTGATAAAAAA CACCCGG AGAA CCGGGTG TTGAGTGAATCATTT TERM 2203 2139554 - 2139567 + r 72 -9.5 -3.10056 | opp_overlap 2139552, overlap 2139552 TCCTGATAAAAAACA CCCGG AGAA CCGGG TGTTGAGTGAATCAT YPK_1929 2139927 - 2139637 - | acid shock protein TERM 2204 2139958 - 2139973 + H 71 -8.2 -3.41051 | opp_overlap 2139957 GTTCTATTCATATAC CGGCCC CGTT GGGTCG TTATAATCAGAGTAG YPK_1930 2140546 - 2141100 + | cytochrome B561 YPK_1931 2141126 - 2141704 + | YceI family protein YPK_1932 2141814 - 2141692 - | hypothetical protein TERM 2205 2141742 - 2141729 - G 86 -8.1 -4.85599 | opp_overlap 2141716 2141729 GTCACCTTATAAAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAC TERM 2206 2141822 - 2141848 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2141811, overlap 2141817 2141823 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2207 2141823 - 2141849 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2141811, overlap 2141817 2141822 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2208 2141907 - 2141934 + r 78 -9.2 -3.61715 | opp_overlap 2141914, overlap 2141894 2141908 2141914 GGGGTTTGTCAGCAG TCTGAAAGGAGC TTTG GCTCCTTTGAGG TTATTGAAAAAGCTA TERM 2209 2141908 - 2141933 + r 75 -10.5 -2.76815 | opp_overlap 2141914, overlap 2141907 2141894 2141914 GGGTTTGTCAGCAGT CTGAAAGGAGC TTTG GCTCCTTTGAG GTTATTGAAAAAGCT TERM 2210 2141914 - 2141927 + r 70 -8.1 -3.72051 | opp_overlap 2141914, overlap 2141908 2141907 2141894 GTCAGCAGTCTGAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAA TERM 2211 2141927 - 2141914 - R 70 -8.1 -3.58343 | opp_overlap 2141908 2141907 2141894 2141914 GTCAGCAGTCTGAAA GGAGC TTTG GCTCC TTTGAGGTTATTGAA TERM 2212 2141997 - 2142010 + r 74 -8.1 -3.95435 | CCTCGGGGCGCTCCG GTGGC TTAC GCCAC TTATATTTTAACCCC TERM 2213 2142472 - 2142503 + r 86 -10.4 -3.79043 | opp_overlap 2142476, overlap 2142471 GTGTGAATTTTTTAG GATAGTTATATCCA TTTC TGAATATAACTATC TTTCGGTTAGTAATG TERM 2214 2142548 - 2142538 - R 75 -5.4 -4.78752 | ACTACAACTTAAAAA CCAA AAA TTGG ACTATGTTCTGGAGT TERM 2215 2143484 - 2143467 - R 72 -6.3 -4.27441 | ATTACGATCAATAAA CGCAACA GGAT TATTGCG CGCCATCCTGAACAG TERM 2216 2143599 - 2143624 + r 74 -6.1 -4.47328 | CAACCCCGTCGCATC CCGTTCCTTAC CAGA GTAGCGGACGG TTTTGTAATCCGCTT TERM 2217 2144543 - 2144569 + r 70 -5.9 -4.25104 | gap 2, overlap 2144550 GCAGCACCTTCGCCC CGGAGGCGTGCCC GGC GGG-ACG-TTCCG TTTTAATCCCGACCA TERM 2218 2144997 - 2145009 + r 77 -4.7 -5.03314 | CTGACGCACGCGCCG GCCAG GTT CAGGC TTTTTTCCGCGTCAG YPK_1935 2147837 - 2146338 - | carboxypeptidase Taq YPK_1936 2149219 - 2147915 - | integral membrane sensor signal transduction histidine kinase YPK_1937 2149965 - 2149219 - | two component transcriptional regulator TERM 2219 2150453 - 2150431 - g 88 -12 -3.646 | opp_overlap 2150445, overlap 2150432 CTGAATTAGAGAGAA CGCCGCAAGC TCA GCTTACGGCA TTGGCGCTGCAAGTA TERM 2220 2150452 - 2150432 - g 85 -13.3 -2.78278 | opp_overlap 2150445, overlap 2150431 TGAATTAGAGAGAAC GCCGCAAGC TCA GCTTACGGC ATTGGCGCTGCAAGT YPK_1938 2150262 - 2150678 + | hypothetical protein YPK_1939 2152093 - 2150702 - | arginine/ornithine antiporter TERM 2221 2151555 - 2151537 - G 79 -10.4 -3.68619 | GCTAAGCCAGTGAAA TCGATACT AAA AGTATCGA GGCTAAATGCGATGC TERM 2222 2152356 - 2152332 - R 82 -7.8 -4.4727 | overlap 2152335 GCAACACGGATAAAA GAAGGGCAGC ACTTG GCCGCCCTTA AGATAATTATTTGAA TERM 2223 2152353 - 2152335 - R 88 -9.5 -4.33785 | overlap 2152332 ACACGGATAAAAGAA GGGCAGC ACTTG GCCGCCC TTAAGATAATTATTT YPK_1940 2153316 - 2152363 - | hypothetical protein TERM 2224 2154899 - 2154874 - g 79 -3.2 -5.19879 | TTGCAAAGAGAAAAA CGGCGAGATC GATATT GATTTCGACG ATACCGTGATTCGCG YPK_1941 2153846 - 2155372 + | NAD(P) transhydrogenase, alpha subunit YPK_1942 2155462 - 2156856 + | NAD(P)(+) transhydrogenase (AB-specific) TERM 2225 2156886 - 2156909 + T 100 -15.4 -4.28049 | CATCCATTGTATTGC TAAGGGCCAC TTCG GTGGCCCTTA TTTTAGGATTTTACG YPK_1943 2157903 - 2156947 - | UspA domain-containing protein YPK_1944 2158790 - 2158038 - | Crp/FNR family transcriptional regulator YPK_1945 2159381 - 2158863 - | methylated-DNA--protein-cysteine methyltransferase YPK_1946 2159622 - 2161067 + | alkaline phosphatase TERM 2226 2161092 - 2161114 + F 100 -9.9 -4.96646 | gap 1 TATCTCACTGGAACG TCCCGGCGCA GTAA TG-GCCGGGA TTTTTGCTTATGTCC TERM 2227 2161280 - 2161270 - f 78 -5.4 -4.96848 | opp_overlap 2161277 TTGGGTATAGAAAAA TGCA TCC TGCA GACTGCATCATTTCA TERM 2228 2161489 - 2161458 - f 79 -11 -3.10164 | opp_overlap 2161458 TGACTTATTATTTAA CCCATTAACTGCAC TTAA GTGAAATTAATGGG TTCTTCTGCTGTGTT TERM 2229 2161458 - 2161489 + F 78 -8.8 -3.88777 | opp_overlap 2161458 TGACTTATTATTTAA CCCATTAACTGCAC TTAA GTGAAATTAATGGG TTCTTCTGCTGTGTT TERM 2230 2161495 - 2161511 + F 71 -8.7 -3.39908 | AATTAATGGGTTCTT CTGCTGT GTT ACGGCAG TCTGTTTTAAAAAAA YPK_1947 2161677 - 2164010 + | hypothetical protein YPK_1948 2164156 - 2164830 + | HAD family hydrolase TERM 2231 2164889 - 2164847 - T 100 -15 -3.65046 | opp_overlap 2164857 2164887 2164888, overlap 2164848 TCCCTACTCGAATAA GCCCGTTAAACCCTGTCG GCAGTAA CGACAGGGTTTAACGTGT GACAACGTCACCTTT TERM 2232 2164888 - 2164848 - T 100 -18.5 -2.78813 | opp_overlap 2164857 2164887, overlap 2164847 CCCTACTCGAATAAG CCCGTTAAACCCTGTCG GCAGTAA CGACAGGGTTTAACGTG TGACAACGTCACCTT TERM 2233 2164857 - 2164879 + T 82 -10.6 -3.63627 | opp_overlap 2164848 2164847 AATAAGCCCGTTAAA CCCTGTCG GCAGTAA CGACAGGG TTTAACGTGTGACAA YPK_1949 2165244 - 2164897 - | amino acid-binding ACT domain-containing protein YPK_1950 2166913 - 2165246 - | acetolactate synthase, large subunit, biosynthetic type TERM 2234 2166043 - 2166059 + g 79 -10.9 -3.59979 | TAATATTGGCATGAG GGCAGAA TTG TTCTGCC TTTCCGATGGCCCGA TERM 2235 2166993 - 2166969 - H 100 -15 -4.96501 | gap 1, opp_overlap 2166969 GGCGATAAAAAGAAA CCCCGCTCGGC TGGC GCCG-GCGGGG TTTGGGAATCTTTCT TERM 2236 2166969 - 2166993 + H 100 -15 -3.6292 | gap 1, opp_overlap 2166969 GGCGATAAAAAGAAA CCCCGCTCGGC TGGC GCCG-GCGGGG TTTGGGAATCTTTCT YPK_1951 2167466 - 2168260 + | hypothetical protein TERM 2237 2168357 - 2168383 + T 91 -7.9 -4.84017 | opp_overlap 2168357 CTGCCGTTTAAAAAA TGCGCTTCTCC GTCGG GGAGTTGCGCA TTTTTGTGGCACGTT TERM 2238 2168383 - 2168357 - T 95 -7.9 -5.00616 | opp_overlap 2168357 CTGCCGTTTAAAAAA TGCGCTTCTCC GTCGG GGAGTTGCGCA TTTTTGTGGCACGTT YPK_1952 2170468 - 2168429 - | putative virulence factor TERM 2239 2170286 - 2170303 + gT 73 -8.4 -3.62616 | AGGCCAGAAGTGAGT CGCCAG TTCTTT CTGGCG TTGTGTGTCGTGGTG TERM 2240 2170466 - 2170440 - GT 81 -9.4 -3.82604 | TCATCCAACGAATAA GCTGGATTTTCC TGA GGGCAATCCAGC AAGAAAGCACGGGTG YPK_1953 2171576 - 2170425 - | putative virulence factor SrfB TERM 2241 2171386 - 2171366 - GR 81 -11.1 -3.30243 | ATTCAGGTTTCACAA TCTCAGGGG CTG CCCCTGGGA GCATCAGTGAATATT TERM 2242 2171518 - 2171506 - GR 82 -7.7 -4.54727 | overlap 2171508 GGCGTTAAAGCAAAA TCCAG GAA CTGGA TCCCACTATCCTGAA YPK_1954 2173134 - 2171581 - | hypothetical protein TERM 2243 2172555 - 2172569 + g 73 -5.6 -4.62904 | opp_overlap 2172544 ATAACTCAACCGCTG CGGGTG TGA CAACCG TTTTTGCCCGTATTT TERM 2244 2172796 - 2172816 + g 71 -3.9 -4.77925 | overlap 2172797 TTTCGCGAGTAATGC CCCGAACAA CTG TTGTGCGGC TTTTTCCGATTTTTT TERM 2245 2173824 - 2173806 - g 91 -11.8 -4.09243 | CAGATCTGGCTAAAA TCGGTGAT GGC ATCACCGA CGGAATTGAAACGAT TERM 2246 2174173 - 2174147 - g 71 -3 -5.00616 | overlap 2174149 CTGGCGTGGAAAAAA CATCAGATGCCA GCC TATCACCTGATA GCCAAAAATGGGCAG YPK_1955 2173340 - 2174830 + | AMP nucleosidase TERM 2247 2174882 - 2174849 - T 100 -10.3 -4.74453 | gap 1, opp_overlap 2174850 2174852, overlap 2174852 GAATAGATTGAAAAA CAACGCAGGCGGATGA TGA TCA-CCGCCTGCGTAT TGAATTGAGAGAGCT TERM 2248 2174850 - 2174881 + T 100 -13.8 -3.17075 | gap 1, opp_overlap 2174849 2174852, overlap 2174852 AATAGATTGAAAAAC AACGCAGGCGGATGA TGA TCA-CCGCCTGCGTA TTGAATTGAGAGAGC TERM 2249 2174879 - 2174852 - T 100 -16.4 -4.46215 | gap 1, opp_overlap 2174852 2174850, overlap 2174849 TAGATTGAAAAACAA CGCAGGCGGATGA TGA TCA-CCGCCTGCG TATTGAATTGAGAGA TERM 2250 2174852 - 2174879 + T 100 -16.4 -3.14878 | gap 1, opp_overlap 2174849 2174852, overlap 2174850 TAGATTGAAAAACAA CGCAGGCGGATGA TGA TCA-CCGCCTGCG TATTGAATTGAGAGA YPK_1956 2176073 - 2175255 - | ABC transporter related TERM 2251 2175948 - 2175936 - G 71 -6.3 -4.29493 | CAGTAAACAGACAAA TTCAC CAT GTGAA ATATGAAGATTTATT YPK_1957 2176904 - 2176083 - | binding-protein-dependent transport systems inner membrane component TERM 2252 2176499 - 2176479 - G 88 -2.3 -5.86965 | overlap 2176480 ACTTATCAAAAAAAA TGCCGGCGG ATT CCCCAGGCC GAACCACAGCATCGC YPK_1958 2177939 - 2176908 - | ABC transporter, periplasmic substrate-binding protein TERM 2253 2177204 - 2177225 + g 73 -8.7 -3.93583 | ACAGTTTAAGTACGC GAGCAGCCA CCTC TGGCTTCTC TTTATACATGGCTTC TERM 2254 2177670 - 2177695 + g 72 -10.5 -3.01708 | gap 1, opp_overlap 2177669 2177670 GGCCGCTATATCAAT TTGC-CCCGCGA CGA TTGCGGGAGCAA TATCTATCCCCTTTG TERM 2255 2178255 - 2178239 - H 79 -8.1 -4.33105 | opp_overlap 2178251 TAATTAGCATCAAAA CATACAT ATT ATGTATG AAAATCACACTTCCT YPK_1959 2178526 - 2178675 + | hypothetical protein YPK_1960 2178694 - 2179347 + | hypothetical protein YPK_1961 2179344 - 2180882 + | ABC transporter related TERM 2256 2181198 - 2181213 + G 73 -2.4 -5.14563 | CGACATTGGGTCTGT CTGGCG TATT CGCGGG TTTTTTAATGCAAGG TERM 2257 2181454 - 2181437 - g 78 -7.7 -4.35604 | gap 1, opp_overlap 2181441, overlap 2181433 TTAACCTACAACAAA CTCGCGGG TAG CCC-CGAG TTGGGGAATACCGGT YPK_1962 2180909 - 2181970 + | monosaccharide-transporting ATPase YPK_1963 2182149 - 2183099 + | periplasmic binding protein/LacI transcriptional regulator YPK_1964 2183243 - 2183713 + | hypothetical protein YPK_1965 2183777 - 2184793 + | LacI family transcription regulator YPK_1966 2184866 - 2184750 - | hypothetical protein YPK_1967 2184938 - 2186392 + | Na+/H+ antiporter NhaC YPK_1968 2186379 - 2187557 + | aminotransferase class I and II YPK_1969 2187706 - 2187798 + | hypothetical protein YPK_1970 2188371 - 2188111 - | TnpA family transposase YPK_1971 2188576 - 2189448 + | hypothetical protein TERM 2258 2189462 - 2189435 - T 79 -7.9 -4.3534 | opp_overlap 2189435, overlap 2189436 TGTCAATCATTAAAA CTCACTGTAAT TAGCTG ATTACAGTGAA TCAGTTGGCCAAATT TERM 2259 2189461 - 2189436 - T 72 -9.2 -3.20722 | opp_overlap 2189435, overlap 2189435 GTCAATCATTAAAAC TCACTGTAAT TAGCTG ATTACAGTGA ATCAGTTGGCCAAAT YPK_1972 2190583 - 2189645 - | hypothetical protein TERM 2260 2190056 - 2190066 + g 80 -6.8 -4.72029 | opp_overlap 2190051 TGTGATAACAGAGAC GGTG CAG CACC TTTTCTTGCATTGCG TERM 2261 2192067 - 2192044 - g 73 -5.2 -4.56914 | overlap 2192046 2192050 2192051 CGACCGAAACCAAAA CATTAACGCG ATAG CGCGTTCAGG TGCGCCGATCGCCGA YPK_1973 2191157 - 2192689 + | hypothetical protein TERM 2262 2192870 - 2192849 - T 93 -10.9 -4.10657 | opp_overlap 2192849 TCAGACCCCTTAAAA GACCGGTCA CTAA TAACCGGTC TTTGAAACGTTACTC TERM 2263 2192849 - 2192870 + T 75 -8.7 -3.58037 | opp_overlap 2192849 TCAGACCCCTTAAAA GACCGGTCA CTAA TAACCGGTC TTTGAAACGTTACTC YPK_1974 2194490 - 2192970 - | aldehyde dehydrogenase TERM 2264 2194755 - 2194733 - H 82 -7.9 -4.43012 | ATCGCAACATTAAAA TCATTATTG AGCCA CAATAATGA TACATGTGTAGCGAA TERM 2265 2195000 - 2194956 - g 100 -20.3 -2.78816 | opp_overlap 2194945, overlap 2194960 2194997 2194998 TCACGCCGTATTACA GCAATTTTCTCAGCCAACAGT GAA AGCGCTGGCTGAGAAAATTGC CGATAAGCAATCGGT TERM 2266 2194996 - 2194960 - g 93 -13.9 -3.29471 | overlap 2194956 GCCGTATTACAGCAA TTTTCTCAGCCAACAGT GAA AGCGCTGGCTGAGAAAA TTGCCGATAAGCAAT YPK_1975 2194759 - 2196603 + | Fis family GAF modulated sigma54 specific transcriptional regulator YPK_1976 2196717 - 2197466 + | short-chain dehydrogenase/reductase SDR YPK_1977 2197693 - 2198067 + | hypothetical protein TERM 2267 2198398 - 2198408 + G 77 -8.2 -4.13945 | ATTAGCAATGGCGTG CCGG AAT CCGG TTTTAAGCTGGAAAT YPK_1978 2198281 - 2198526 + | hypothetical protein TERM 2268 2198547 - 2198567 + F 100 -9.7 -4.66537 | TTCCCTCCCTGCTAA GGCGTAGCA TCG TGGTACGCC TTTTATATTGAACAA TERM 2269 2199403 - 2199417 + G 77 -4.9 -4.85782 | TCTAGGATTAATGGC GGGCT TCAGC GGCCC TTTATTTTTAAAAGC TERM 2270 2199815 - 2199831 + G 70 -7.9 -3.91197 | overlap 2199819 GCAGCAACGACCCAT GCGCCCA TTA TGGCCGC TTTAATGGTTTGTGA YPK_1979 2198672 - 2199952 + | chloride channel core YPK_1980 2200725 - 2200057 - | dethiobiotin synthase TERM 2271 2200914 - 2200938 + r 75 -10.3 -2.84602 | opp_overlap 2200918 2200921, overlap 2200913 2200921 GACCGAAGGTACCCA CTAATAATTAA CTC TTAATTATTAG ATTTAATACACTAGC YPK_1981 2202166 - 2200949 - | ROK family protein TERM 2272 2202306 - 2202319 + r 87 -5.3 -5.47846 | overlap 2202291 TTATGTGATTTGCTG CACAT AATC ATGTG TTTTCTTTTTTCCTT YPK_1982 2203259 - 2202345 - | LysR family transcriptional regulator YPK_1983 2203472 - 2204770 + | major facilitator transporter TERM 2273 2205565 - 2205552 - g 79 -3.7 -5.29782 | TACAGCTAGAAAAAA GCCTG AATG CTGGC CGAGCTGTTCCTCCA YPK_1984 2204936 - 2205910 + | DNA replication terminus site-binding protein TERM 2274 2205967 - 2205947 - T 71 -6.8 -4.11692 | opp_overlap 2205947 TAGCCACTGTGAAAA CGCCGG TAATCCACC CCGGCG TTAATATAACAATGT YPK_1985 2207387 - 2205990 - | fumarate hydratase, class II TERM 2275 2208028 - 2208009 - g 71 -2.8 -4.86731 | gap 1, overlap 2208013 TTTTGCTAAAGAAAA CCAGGCAGG TAT CCCAC-TGG ATGCGGCTGAGCGCA YPK_1986 2207767 - 2208846 + | mannose-6-phosphate isomerase, class I TERM 2276 2208973 - 2208986 + F 71 -3.1 -5.07107 | GGCCTATATTATTTG GGAGA TATA TCTTC TTTTTTGGGGATTTC TERM 2277 2209347 - 2209361 + G 71 -6.4 -4.19336 | AAAGTATTGAGCGAT GGTGAT GAA ATCGCC TTTATTGAAGTCATT TERM 2278 2210187 - 2210169 - g 71 -7.4 -4.13748 | TGGAAAAATACTAAA GGGGAAAG TAC CTTTACCC TGAATATCGAACTGA TERM 2279 2210272 - 2210262 - g 78 -5.4 -5.00616 | CCCGCGGTGAAAAAA TTGG ACG CCAA CCTGAGCATTCCAAT YPK_1987 2209086 - 2210630 + | hypothetical protein TERM 2280 2210659 - 2210676 + T 100 -12.7 -4.72272 | opp_overlap 2210659 TTTGTTTGATAAAAA CGGAGCC CATT GGCTCCG TTTTTAATGCGAACC TERM 2281 2210676 - 2210659 - T 100 -12.7 -4.82901 | opp_overlap 2210659 TTTGTTTGATAAAAA CGGAGCC CATT GGCTCCG TTTTTAATGCGAACC YPK_1988 2211596 - 2210847 - | GntR family transcriptional regulator YPK_1989 2211851 - 2211946 + | hypothetical protein YPK_1990 2211970 - 2212899 + | hypothetical protein TERM 2282 2215696 - 2215686 - g 83 -6.8 -4.91084 | CAGCGAACAAGAAAA GCAG GCA CTGC GGGATAAAGTATTCC YPK_1993 2214718 - 2215722 + | adenosine deaminase TERM 2283 2215760 - 2215788 + T 73 -5.9 -4.48449 | opp_overlap 2215760 CGATAAAATAAAAAA GCGCCCATACC CTAGAGT GGTACCGGCGC TTTCTATTTTCATCA TERM 2284 2215788 - 2215760 - T 100 -8.1 -5.86976 | opp_overlap 2215760 CGATAAAATAAAAAA GCGCCCATACC CTAGAGT GGTACCGGCGC TTTCTATTTTCATCA YPK_1994 2216925 - 2215897 - | hypothetical protein TERM 2285 2216314 - 2216334 + g 89 -6.1 -5.27923 | opp_overlap 2216314, overlap 2216316 CAACAAAATAGATGA CCGGTCAGT GAT ATTGACCAG TTTTTTGTGCCGTTC TERM 2286 2217074 - 2217047 - R 100 -7.8 -6.32976 | gap 1, opp_overlap 2217045 2217047 AAAAAAATAAAAAAA CTCTGGGCCAC GGAGATT GTG-CCCAGAG AGATATTTCCACCCT TERM 2287 2217129 - 2217145 + r 78 -2.2 -5.49569 | AAACATCAATTTTTA GCAATG ATCGG CAGTGC TTTTTTCTGTTGATC YPK_1995 2218168 - 2217119 - | oxidoreductase domain-containing protein YPK_1996 2219228 - 2218296 - | AraC family transcriptional regulator YPK_1997 2220512 - 2219463 - | monosaccharide-transporting ATPase YPK_1998 2222101 - 2220530 - | ABC transporter related YPK_1999 2223182 - 2222199 - | monosaccharide-transporting ATPase TERM 2288 2222958 - 2222935 - G 76 -8.8 -4.06361 | gap 1, opp_overlap 2222935 GTACAGATAACGAAA CCTTGCGCGCC ACT GGC-CGCCAGG CTGTCGATGGCGTTC TERM 2289 2222935 - 2222977 + g 90 -10.4 -4.38712 | opp_overlap 2222935 GTACAGATAACGAAA CCTTGCGCGCCACTGGCCGC CAG GCTGTCGATGGCGTTCAGGG TTTTCTCGCCATCAG YPK_2000 2223590 - 2225293 + | L-ribulokinase YPK_2001 2225377 - 2226879 + | L-arabinose isomerase TERM 2290 2226943 - 2226927 - T 70 -5.1 -4.49311 | opp_overlap 2226934 2226937, overlap 2226928 2226939 ATCAGTATTATAAAA TTCGCTA TGA TAGCGAC ACCCTCAGAGGCCTG YPK_2002 2229279 - 2227141 - | type I secretion system ATPase YPK_2003 2230651 - 2229281 - | HlyD family type I secretion membrane fusion protein YPK_2004 2232823 - 2230676 - | type I secretion system ATPase TERM 2291 2231864 - 2231849 - G 80 -7.5 -4.65895 | overlap 2231851 CGTTTCAGTCAAAAA CGCGC CGTTTT GCGCG GCAAAACCACAGAGA TERM 2292 2232043 - 2232059 + g 72 -10.9 -2.59793 | overlap 2232042 2232040 ATGTCAGGGCCGAAC CCGTGAT GAA ATCACGG ATATTATCTAACTCA TERM 2293 2233666 - 2233680 + G 73 -7.1 -4.21997 | overlap 2233671 AACACTCGGGTGGCC GCTGC TAGCT GCAGC TATTTTTGTTCCTTA TERM 2294 2233671 - 2233682 + G 80 -4.4 -5.1963 | overlap 2233666 TCGGGTGGCCGCTGC TAGC TGCA GCTA TTTTTGTTCCTTACA YPK_2005 2233298 - 2233741 + | hypothetical protein TERM 2295 2233816 - 2233841 + F 87 -5.4 -5.55855 | ATCTGTTGTCGTCGG GCCGTCAATT TTGGAT AATAGGCGGC TTTTATTTTTTTAGG YPK_2006 2233869 - 2234450 + | electron transport complex, RnfABCDGE type, A subunit TERM 2296 2234688 - 2234669 - g 90 -9.2 -4.54301 | GAAAAAATCAACAAA TGCGCGCC GGGT GGCGAGCA GGTGATGCTGAAACT YPK_2007 2234450 - 2235073 + | electron transport complex, RnfABCDGE type, B subunit TERM 2297 2235441 - 2235429 - g 71 -9.1 -3.61398 | CGCTGGCGTGAACAA CAGCC GTG GGCTG ACTATCGCCAGCGCG TERM 2298 2236065 - 2236035 - g 76 -9.8 -3.6682 | opp_overlap 2236060 CTGTATTTACTTAAA TTGGCCGGTTTCAA GCC TCAAAACCCGCCAA TGGTGATTATGGGGG YPK_2008 2235066 - 2237162 + | electron transport complex, RnfABCDGE type, C subunit YPK_2009 2238160 - 2237267 - | AraC family transcriptional regulator TERM 2299 2237850 - 2237872 + g 93 -8.4 -5.03314 | overlap 2237852 TTCATCTGGCGGAAG CTGTTTGGTG TCA CGCCAAACCG TTTTTTAAAGGTACG YPK_2010 2238649 - 2239743 + | electron transport complex, RnfABCDGE type, D subunit YPK_2011 2239753 - 2240382 + | electron transport complex, RnfABCDGE type, G subunit YPK_2012 2240379 - 2241080 + | electron transport complex, RnfABCDGE type, E subunit TERM 2300 2241111 - 2241092 - g 81 -3.5 -5.48514 | ATGAATAAAGAAAAA CGTGTCA CTATTT TGACCCG TCTGCGGGATAACAA YPK_2013 2241077 - 2241718 + | endonuclease III TERM 2301 2241850 - 2241890 + T 73 -10.5 -2.53995 | opp_overlap 2241856, overlap 2241856 TTAAATTCTACCTGG CTCAAATTTGGGGGCGACA TTA TGCTGACCCCAAATTTGAA TCCATTCGGCTAAAT TERM 2302 2241856 - 2241884 + T 70 -8.1 -3.68619 | opp_overlap 2241856, overlap 2241850 TCTACCTGGCTCAAA TTTGGGGGCGACA TTA TGCTGACCCCAAA TTTGAATCCATTCGG YPK_2014 2242898 - 2241900 - | NAD-dependent epimerase/dehydratase TERM 2303 2242418 - 2242436 + g 73 -4.6 -4.66609 | opp_overlap 2242418 2242422 GGCTGTAATCAGACA GCAATAAA TCG TTTAATGC TTTTTGCGTACCATA YPK_2015 2244253 - 2242943 - | major facilitator transporter TERM 2304 2244168 - 2244197 + g 83 -6.5 -4.95547 | gap 1, opp_overlap 2244155 2244171, overlap 2244171 ATCAGTAGCGGCAAG AGATGCCATACCGT TTT ACGGTA-GGCATTA TTTTCTTCTTGTAAC TERM 2305 2244194 - 2244171 - G 72 -10.4 -3.08073 | gap 1, opp_overlap 2244171 2244168, overlap 2244155 AGTAGCGGCAAGAGA TGCCATACCGT TTT ACGGTA-GGCA TTATTTTCTTCTTGT TERM 2306 2244171 - 2244194 + g 100 -10.4 -4.55653 | gap 1, opp_overlap 2244155 2244171, overlap 2244168 AGTAGCGGCAAGAGA TGCCATACCGT TTT ACGGTA-GGCA TTATTTTCTTCTTGT TERM 2307 2245134 - 2245144 + G 73 -3.2 -4.86033 | CTGAACCTGAAACAT TGGT TGA GCCA TTTTTATCCCGCTTT TERM 2308 2245327 - 2245316 - g 73 -7.2 -4.2828 | opp_overlap 2245316 CGCCACCCATTAAAA GGCG ACCG CGCC TTTCAGGCTGACCTA YPK_2016 2244902 - 2246836 + | exoribonuclease II TERM 2309 2246890 - 2246855 - f 71 -9.6 -3.03124 | opp_overlap 2246860, overlap 2246860 TCTTATGTTTTAACA TGATAGCCGTCGGAGG AATT CCCCCGACGGCTTTTT TAATGTTATGTTTGC TERM 2310 2246860 - 2246885 + F 100 -16.1 -5.30189 | opp_overlap 2246855 2246860 TGTTTTAACATGATA GCCGTCGGAGG AATT CCCCCGACGGC TTTTTTAATGTTATG TERM 2311 2246885 - 2246860 - f 100 -18.3 -2.9155 | opp_overlap 2246860, overlap 2246855 TGTTTTAACATGATA GCCGTCGGAGG AATT CCCCCGACGGC TTTTTTAATGTTATG TERM 2312 2248996 - 2248986 - g 75 -5.4 -4.74132 | opp_overlap 2248986 ATATTCCATGAAAAA CCAA GTA TTGG CTTCCTTGCTCAAGC YPK_2017 2247186 - 2249252 + | carbon starvation protein CstA YPK_2018 2249245 - 2249550 + | hypothetical protein TERM 2313 2249581 - 2249611 + T 100 -11.3 -4.18506 | overlap 2249576 2249584 2249604 AAATTAGTGACACCG TAACGCCCTATGG TGATT TTATAGGGCGTTA TTCTTTTACCGCTCA TERM 2314 2249584 - 2249608 + T 79 -8.6 -4.20868 | overlap 2249576 2249581 2249604 TTAGTGACACCGTAA CGCCCTATGG TGATT TTATAGGGCG TTATTCTTTTACCGC YPK_2019 2250332 - 2249667 - | transaldolase YPK_2020 2250666 - 2250914 + | hypothetical protein TERM 2315 2250921 - 2250900 - T 70 -5.1 -4.56597 | CTCTGGCTGGAAAAA CCCGTGC AAGACTGA ACACGGG CTCATTATTTATGTT YPK_2021 2251638 - 2250943 - | L-ribulose-5-phosphate 4-epimerase YPK_2022 2252120 - 2252335 + | osmotically inducible lipoprotein B precursor TERM 2316 2252570 - 2252607 + T 95 -13.8 -2.87132 | gap 1, opp_overlap 2252570 2252575, overlap 2252575 ATTAGAAGTTCTAAA TAAAATACGGCGTTTGA CAATA TCA-ACGCCGTATTTTA TATCTGCGCGGAAAA TERM 2317 2252607 - 2252570 - T 100 -14.5 -3.62859 | gap 1, opp_overlap 2252570 2252575, overlap 2252575 ATTAGAAGTTCTAAA TAAAATACGGCGTTTGAC AAT ATCA-ACGCCGTATTTTA TATCTGCGCGGAAAA TERM 2318 2252602 - 2252575 - T 100 -10 -4.88405 | gap 1, opp_overlap 2252570 2252575, overlap 2252570 AAGTTCTAAATAAAA TACGGCGTTTGAC AAT ATCA-ACGCCGTA TTTTATATCTGCGCG TERM 2319 2252575 - 2252602 + T 100 -9.3 -4.60797 | gap 1, opp_overlap 2252575 2252570, overlap 2252570 AAGTTCTAAATAAAA TACGGCGTTTGA CAATA TCA-ACGCCGTA TTTTATATCTGCGCG YPK_2023 2252964 - 2252638 - | translation initiation factor SUI1 YPK_2024 2253701 - 2252964 - | orotidine 5'-phosphate decarboxylase YPK_2025 2254170 - 2254469 + | hypothetical protein TERM 2320 2254504 - 2254523 + T 71 -10 -2.63073 | opp_overlap 2254504 2254503, overlap 2254503 2254501 ACAACAGCTAACAAC CGGGTGGA CCCG TTCACCCG ATCTTATTAGCAAAG YPK_2026 2255760 - 2254591 - | TPR repeat-containing protein TERM 2321 2255135 - 2255145 + g 73 -2.4 -5.08824 | overlap 2255134 GCACATTGTTTATCC GCCG TTG CCGC TTTTTTCAGTAACCC YPK_2027 2256078 - 2255767 - | hypothetical protein YPK_2028 2257020 - 2256259 - | phosphatidylglycerophosphatase TERM 2322 2258003 - 2257987 - g 71 -4.3 -4.70626 | overlap 2257978 2257975 CAACAACCCTAAAAA GGTCGAG ATC CTCACCC AAGCGGGGATCAATA YPK_2029 2257514 - 2258116 + | GTP cyclohydrolase II TERM 2323 2258174 - 2258148 - T 91 -10.2 -4.16033 | opp_overlap 2258148 GCGAAATAAGAATAA GGGTAGGTTCAA TAA TTATACCTACCC TTTAGAGGCTGATAA YPK_2030 2260952 - 2258280 - | aconitate hydratase 1 TERM 2324 2259803 - 2259839 + g 78 -10.9 -3.30159 | gap 1, overlap 2259800 CTTTAGGTAATGCGA CCCAGTCTTGT-GGGC GTTTTG GCCCTGCCAGACTGGG TTCTACCGAACTTAA TERM 2325 2260880 - 2260862 - G 79 -11.7 -3.11768 | opp_overlap 2260860 TGATATCACCCAACA CTGCCGC CAATT GCGGCAG GCTGTAGTAGTAATA YPK_2031 2262167 - 2261316 - | hypothetical protein YPK_2032 2263477 - 2262503 - | LysR family transcriptional regulator TERM 2326 2263814 - 2263798 - R 100 -9.4 -5.46657 | opp_overlap 2263798 2263797 TAGCCCAATAAAAAA CCAGCC GCGAA GGCTGG CTTTACCGAGGTCAG YPK_2033 2266490 - 2263875 - | DNA topoisomerase I TERM 2327 2265551 - 2265562 + g 83 -4.4 -5.40072 | CATACAGGCGCTGTG CCAT CATC ATGG TTTTTTTCACACCAA TERM 2328 2266265 - 2266281 + g 77 -6.5 -4.55446 | GATCGACCCCCATAC GGTTGAC TAA GGCAACC TTTTCGTCTTTCTTC TERM 2329 2266513 - 2266527 + r 80 -5 -5.13344 | overlap 2266514 TTTACCTAAATTATT TCTTCT AAA AGAAGG TTTTTATCTTGCTGT YPK_2034 2266816 - 2266517 - | hypothetical protein YPK_2035 2266909 - 2267160 + | hypothetical protein TERM 2330 2267216 - 2267247 + T 73 -7.3 -4.18488 | opp_overlap 2267215 2267217, overlap 2267217 GGGTTGGTAGCAAAT AGCAGGGGGTA CCGTTCAGAT TACCCCCTGCA TTTATTGCCATCACT TERM 2331 2267217 - 2267246 + T 79 -10.8 -3.10611 | opp_overlap 2267215 2267217, overlap 2267216 GGTTGGTAGCAAATA GCAGGGGGTA CCGTTCAGAT TACCCCCTGC ATTTATTGCCATCAC TERM 2332 2267246 - 2267217 - T 83 -10.8 -3.44848 | gap 1, opp_overlap 2267217 2267216, overlap 2267215 GGTTGGTAGCAAATA GCAGGGGGT-ACC GTTCA GATTACCCCCTGC ATTTATTGCCATCAC YPK_2036 2268325 - 2267279 - | peptidase S49 domain-containing protein TERM 2333 2267802 - 2267790 - G 77 -10.5 -3.54951 | opp_overlap 2267787, overlap 2267777 CAGGCCATCATATAA CCGCC ACT GGCGG CAACTTTATCAACCG TERM 2334 2267987 - 2267952 - G 90 -12.8 -3.67 | gap 1, overlap 2267950 2267955 GCAACGGCCAAAATA GCA-GAGATCTCTTCAC GTA ATGAAGAGACCTCCTGC GCCCCAATGCTCCCT TERM 2335 2267983 - 2267955 - G 86 -13.3 -2.93891 | overlap 2267952 2267950 ACGGCCAAAATAGCA GAGATCTCTTCAC GTA ATGAAGAGACCTC CTGCGCCCCAATGCT TERM 2336 2269114 - 2269101 - g 75 -8.1 -4.21439 | overlap 2269089 GAACCCGAACACAAA TGCGG GCGA CCGCA TTCCCCGATGAAGAT YPK_2037 2268497 - 2269258 + | short-chain dehydrogenase/reductase SDR YPK_2038 2269275 - 2269865 + | cob(I)alamin adenosyltransferase TERM 2337 2269923 - 2269886 - T 75 -5.7 -4.63542 | gap 1, opp_overlap 2269886 2269886, overlap 2269889 TATAAGCGTTAAAAA TA-ATATTGCCGCAGTCC AAA AAACTGCGGCAATAAGCA TTATTCACGTCGCTA TERM 2338 2269919 - 2269889 - T 100 -15.6 -4.42235 | opp_overlap 2269886 2269886, overlap 2269886 AAGCGTTAAAAATAA TATTGCCGCAGTCC AAA AAACTGCGGCAATA AGCATTATTCACGTC YPK_2039 2271022 - 2269988 - | pseudouridine synthase TERM 2339 2271173 - 2271188 + r 83 -9 -4.16681 | ACTGGCACACACACT TGTCCG TGGC CGGACA TTTTACACTAATATT YPK_2040 2271972 - 2271352 - | Sua5/YciO/YrdC/YwlC family protein YPK_2041 2272924 - 2271989 - | phosphotransferase domain-containing protein TERM 2340 2273264 - 2273278 + H 100 -11.4 -5.64274 | TGCAGATTGCTTCAG CCCGCT AAT AGCGGG TTTTTTTATGGATAG YPK_2042 2273340 - 2274905 + | anthranilate synthase component I YPK_2043 2274905 - 2275483 + | glutamine amidotransferase of anthranilate synthase TERM 2341 2276322 - 2276304 - g 73 -5.2 -4.63932 | opp_overlap 2276304 TATGCCGGAAGAAAA CCGTGACA TTT TAGCACGG TTGTTACAAGGTAAA YPK_2044 2275498 - 2276496 + | anthranilate phosphoribosyltransferase YPK_2045 2276500 - 2277927 + | indole-3-glycerol-phosphate synthase., phosphoribosylanthranilate isomerase YPK_2046 2278062 - 2279252 + | tryptophan synthase, beta subunit TERM 2342 2279932 - 2279915 - g 80 -8.3 -4.4078 | opp_overlap 2279916 2279931 CCCGCGCAAGTAAAA GCCAGCC TGGC GGCGGGC GCGGCGGGTGCTATT YPK_2047 2279252 - 2280058 + | tryptophan synthase, alpha subunit TERM 2343 2280052 - 2280041 - f 72 -7.2 -3.91196 | opp_overlap 2280041 GTCACAGAGATGAAA GCGG CAAC CCGC AGCTAGTTATTATTT TERM 2344 2280147 - 2280179 + F 76 -7.8 -4.13343 | overlap 2280149 GTCATTACCGCCCTT CAGCGCCTGTTT GTTTACATG AAACAGGCGCTA TTTTCAGCCATTTCT TERM 2345 2280149 - 2280177 + F 82 -10.4 -3.65832 | overlap 2280147 CATTACCGCCCTTCA GCGCCTGTTT GTTTACATG AAACAGGCGC TATTTTCAGCCATTT YPK_2048 2280401 - 2280715 + | transport-associated TERM 2346 2280752 - 2280720 - T 100 -10.6 -5.30155 | gap 1, opp_overlap 2280725, overlap 2280723 2280725 TGATTAAGTAAAAAA CAG-GAGGAGGCGCA TAAC CGCGCCTCCTTACTG CCCGCCTAACTGATG TERM 2347 2280748 - 2280723 - T 79 -11.1 -3.14982 | opp_overlap 2280725, overlap 2280720 2280725 TTAAGTAAAAAACAG GAGGAGGCGCA TAAC CGCGCCTCCTT ACTGCCCGCCTAACT TERM 2348 2280725 - 2280746 + T 95 -13 -3.14564 | opp_overlap 2280723 2280720 2280725 AAGTAAAAAACAGGA GGAGGCGC ATAACC GCGCCTCC TTACTGCCCGCCTAA TERM 2349 2280746 - 2280725 - T 100 -13.7 -3.11487 | opp_overlap 2280725, overlap 2280723 2280720 AAGTAAAAAACAGGA GGAGGCGCA TAAC CGCGCCTCC TTACTGCCCGCCTAA YPK_2049 2281497 - 2280862 - | OmpW family protein TERM 2350 2281504 - 2281552 + H 100 -13.6 -4.03078 | gap 1, overlap 2281506 2281506 TTTTTTCATTATCCA TTC-CATTTGTAGGTATATTTAC GGGG GTGAATATACCTACAAATGAGTA TTTGTGATCTAATCG TERM 2351 2281506 - 2281550 + H 100 -16.2 -3.60505 | gap 1, overlap 2281504 2281506 TTTTCATTATCCATT C-CATTTGTAGGTATATTTAC GGGG GTGAATATACCTACAAATGAG TATTTGTGATCTAAT TERM 2352 2281506 - 2281549 + H 100 -16.4 -2.7558 | overlap 2281506 2281504 TTTTCATTATCCATT CCATTTGTAGGTATATTTAC GGGG GTGAATATACCTACAAATGA GTATTTGTGATCTAA TERM 2353 2281555 - 2281575 + H 73 -8.4 -3.57715 | CTACAAATGAGTATT TGTGATCT AATCG AGATCACA TCTTTCGTATCTTTT YPK_2050 2281983 - 2282753 + | hypothetical protein TERM 2354 2282828 - 2282806 - T 100 -16.4 -4.68593 | TGTATCATTCAAAAA CGCCTGATGT ATT ACATCAGGCG TTCAAACTGTAGACA YPK_2051 2284613 - 2282874 - | sulphate transporter YPK_2052 2284656 - 2284555 - | hypothetical protein YPK_2053 2284844 - 2285386 + | intracellular septation protein A YPK_2054 2285466 - 2285915 + | thioesterase superfamily protein TERM 2355 2285962 - 2285945 - T 100 -14.1 -4.12603 | TTGATTAAACAAGAA GGGCCGC AAAA GCGGCCC TGAGGTTGGTGACAG YPK_2055 2286754 - 2285984 - | TonB family protein YPK_2056 2286908 - 2286786 - | hypothetical protein YPK_2057 2287106 - 2287351 + | YCII-related YPK_2058 2287589 - 2287834 + | hypothetical protein TERM 2356 2287867 - 2287906 + T 100 -11 -6.15536 | opp_overlap 2287869 2287871 2287874 2287877, overlap 2287868 2287869 CGGTTGTAGACACTA GATATAATAATACGCCTA AAGC TAGGCGTATTATTATAAG TTTTTTTTGTTAATT TERM 2357 2287868 - 2287905 + T 100 -14.5 -4.25661 | opp_overlap 2287869 2287871 2287874 2287877, overlap 2287867 2287869 GGTTGTAGACACTAG ATATAATAATACGCCTA AAGC TAGGCGTATTATTATAA GTTTTTTTTGTTAAT TERM 2358 2287869 - 2287904 + T 100 -18 -3.12957 | opp_overlap 2287869 2287871 2287874 2287877, overlap 2287868 2287867 GTTGTAGACACTAGA TATAATAATACGCCTA AAGC TAGGCGTATTATTATA AGTTTTTTTTGTTAA TERM 2359 2287904 - 2287869 - T 100 -18 -2.88999 | opp_overlap 2287869 2287868 2287867, overlap 2287871 2287874 2287877 GTTGTAGACACTAGA TATAATAATACGCCTA AAGC TAGGCGTATTATTATA AGTTTTTTTTGTTAA TERM 2360 2287902 - 2287871 - T 100 -16.2 -2.99545 | opp_overlap 2287869 2287868 2287867, overlap 2287869 2287874 2287877 TGTAGACACTAGATA TAATAATACGCCTA AAGC TAGGCGTATTATTA TAAGTTTTTTTTGTT TERM 2361 2287899 - 2287874 - T 100 -13.5 -3.63762 | opp_overlap 2287869 2287868 2287867, overlap 2287871 2287869 2287877 AGACACTAGATATAA TAATACGCCTA AAGC TAGGCGTATTA TTATAAGTTTTTTTT TERM 2362 2287896 - 2287877 - T 90 -10.8 -3.94067 | opp_overlap 2287869 2287868 2287867, overlap 2287874 2287871 2287869 CACTAGATATAATAA TACGCCTA AAGC TAGGCGTA TTATTATAAGTTTTT YPK_2059 2288213 - 2287950 - | hypothetical protein YPK_2060 2288458 - 2288330 - | hypothetical protein YPK_2061 2288972 - 2288433 - | virulence-related outer membrane protein TERM 2363 2289378 - 2289362 - H 100 -8.7 -5.48213 | opp_overlap 2289361 2289364 GATTCAAAACAAAAA CAGCCTC ATA GAGACTG CCTTATTACCATAAT TERM 2364 2289799 - 2289773 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 2289782, overlap 2289774 2289789 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2365 2289800 - 2289774 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 2289782, overlap 2289773 2289789 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_2062 2289812 - 2289949 + | hypothetical protein YPK_2063 2290018 - 2291478 + | phospholipase D/transphosphatidylase YPK_2064 2291613 - 2291966 + | hypothetical protein TERM 2366 2292024 - 2291992 - T 71 -9.1 -3.31416 | opp_overlap 2291992 2291993, overlap 2291995 AAAATAAAGAGTTAA TCATTGCCCCATAGT TCA ACCCCGGGGCAATGT ATCTTAATTATCCTT TERM 2367 2292021 - 2291995 - T 70 -9.4 -2.8084 | opp_overlap 2291993 2291992, overlap 2291992 ATAAAGAGTTAATCA TTGCCCCATAGT TCA ACCCCGGGGCAA TGTATCTTAATTATC YPK_2065 2292480 - 2292265 - | hypothetical protein TERM 2368 2292580 - 2292564 - R 77 -4.5 -5.05228 | opp_overlap 2292559 2292564 2292573 ATTAAATGACAAAAA CACATTA ACT TAATATG TTTTAATTCGTCAAT YPK_2066 2294052 - 2293051 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2369 2293090 - 2293080 - G 73 -8.2 -3.794 | CTTTAAGGCACGAAA CCGC GTG GCGG AAACTCCCTTCTAAT YPK_2067 2295050 - 2294049 - | oligopeptide/dipeptide ABC transporter, ATPase subunit TERM 2370 2294275 - 2294263 - G 71 -6.3 -4.20783 | ACGGCATTCAATAAA CCTAT CGA ATAGG GGTGGCTTGGATGAT YPK_2068 2295967 - 2295062 - | binding-protein-dependent transport systems inner membrane component YPK_2069 2296906 - 2295986 - | alkaline phosphatase TERM 2371 2296497 - 2296479 - G 71 -3.1 -4.92757 | overlap 2296481 GGAGCAACAACAAAA CTGGG TATGACGAC CCCAG TCATCGCAAAACCCA YPK_2070 2298630 - 2296993 - | extracellular solute-binding protein TERM 2372 2299446 - 2299411 - R 80 -2.6 -5.49809 | gap 1, overlap 2299412 CAAAGCGGAAAAAAA GGAGAAGGCCACCAA GAATAGT TCAGTGGCCT-CTCG AAAATTCTGAATGGT YPK_2071 2300111 - 2299467 - | multiple antibiotic resistance (MarC)-related protein TERM 2373 2300151 - 2300141 - H 74 -4 -5.08088 | overlap 2300144 AATTGCTAATAAAAA TATC ACC GATA ACAGTGCATTATAAC TERM 2374 2301459 - 2301425 - g 80 -8.7 -4.33621 | gap 2, opp_overlap 2301446 2301447, overlap 2301412 GACGCAACCAATAAA GCTGCGGATATCGTGCT TCA AGC-CGCTATC-GCAGC AGGTGCGCCAGCGGA TERM 2375 2302772 - 2302737 - g 78 -9.1 -4.10007 | opp_overlap 2302748, overlap 2302748 ATAAGTTCCCGAAAA TGGGTGTAAAAGCGA AATTGG TCGCTATTACAACCA CATCAGGTACCGGTT YPK_2072 2300981 - 2303656 + | iron-containing alcohol dehydrogenase TERM 2376 2303747 - 2303706 - T 86 -6 -5.27477 | gap 2, opp_overlap 2303714, overlap 2303707 2303714 AGGGTAAGCAAAAAA TGATATAACCCCCGATGAGC AGCC GCTGATCGGGGGTT-T-TCT TTTACAGACCAATTA TERM 2377 2303746 - 2303707 - T 81 -9.5 -3.75402 | gap 2, opp_overlap 2303714, overlap 2303706 2303714 GGGTAAGCAAAAAAT GATATAACCCCCGATGAGC AGCC GCTGATCGGGGGTT-T-TC TTTTACAGACCAATT TERM 2378 2303741 - 2303714 - T 100 -15.6 -3.74447 | opp_overlap 2303714, overlap 2303707 2303706 CAAAAAATGATATAA CCCCCGATGAGC AGCC GCTGATCGGGGG TTTTCTTTTACAGAC TERM 2379 2303714 - 2303741 + T 100 -15.6 -5.07652 | opp_overlap 2303707 2303706 2303714 CAAAAAATGATATAA CCCCCGATGAGC AGCC GCTGATCGGGGG TTTTCTTTTACAGAC YPK_2073 2304997 - 2304407 - | thymidine kinase TERM 2380 2306030 - 2306008 - g 77 -10.6 -3.5394 | overlap 2305997 2306014 AAAGCTGCTGGTAAA GCAAAACGTG CTG CACGTCCTGC TAAATATCAGTATAA TERM 2381 2306024 - 2306014 - g 77 -6.8 -4.54727 | overlap 2306008 GCTGGTAAAGCAAAA CGTG CTG CACG TCCTGCTAAATATCA YPK_2074 2305747 - 2306154 + | histone family protein nucleoid-structuring protein H-NS TERM 2382 2306210 - 2306187 - T 100 -15.4 -3.69323 | opp_overlap 2306187 CTATTACTATCGAAA CACCCTCCTA TTAA TAGGAGGGTG TTTTTTTGTCTTTCA TERM 2383 2306187 - 2306210 + T 100 -15.4 -5.88197 | opp_overlap 2306187 CTATTACTATCGAAA CACCCTCCTA TTAA TAGGAGGGTG TTTTTTTGTCTTTCA YPK_2075 2306320 - 2306168 - | hypothetical protein YPK_2076 2306579 - 2306412 - | hypothetical protein YPK_2077 2307935 - 2306589 - | nucleotide sugar dehydrogenase YPK_2078 2309258 - 2308242 - | response regulator receiver protein TERM 2384 2310063 - 2310043 - H 95 -7.6 -4.9138 | opp_overlap 2310045 AGTACGCAAACAAAA TAACCACC ATAAA GGTGGCTA TTCAGCGTAAACATT YPK_2079 2310592 - 2311056 + | SecC motif-containing protein YPK_2080 2311140 - 2311988 + | formyltetrahydrofolate deformylase YPK_2082 2312544 - 2312422 - | hypothetical protein YPK_2083 2313738 - 2312878 - | LysR family transcriptional regulator TERM 2385 2313193 - 2313218 + g 71 -7.1 -4.03137 | gap 1, opp_overlap 2313201 TAACCAAACATTACT GTGAAGAATATT TAT AATAT-CTTCAC TTTCATTAATTATAT TERM 2386 2313585 - 2313597 + g 87 -6.3 -5.17054 | TCATGCCAAATTTCT CTCTT TTA AAGAG TTTTTTCCCTATTAT YPK_2084 2314238 - 2314110 - | hypothetical protein TERM 2387 2314695 - 2314707 + G 75 -3.3 -5.0538 | GAAGACGTCAGCCAG CATGG TTA CCACG TTTTTTACCATGGGC TERM 2388 2314773 - 2314761 - g 78 -9.1 -4.015 | CTATTGACGAAAGAA CAGCC ACT GGCTG TGCGCCGAGGTTTCC YPK_2085 2314548 - 2315354 + | exodeoxyribonuclease III YPK_2086 2315452 - 2315838 + | NUDIX hydrolase YPK_2087 2316141 - 2315851 - | hypothetical protein YPK_2088 2318066 - 2316138 - | DNA topoisomerase III YPK_2089 2319186 - 2318140 - | selenide, water dikinase TERM 2389 2318996 - 2318984 - G 89 -3.4 -5.61596 | ATCGGCATAAAAAAA TCAG TCGTG CTGA TAATGCCAACACCGT YPK_2090 2319962 - 2319411 - | nitroreductase YPK_2091 2320125 - 2321975 + | signal peptide peptidase SppA, 67K type TERM 2390 2322026 - 2322003 - f 77 -11 -2.80789 | opp_overlap 2322004, overlap 2322002 2322000 AATACAGATAAATAT TCAGCCCGAT ACCC ATCGGGCTGT TTTTCCTCGCTGAGC TERM 2391 2322004 - 2322025 + F 100 -14.5 -4.7497 | opp_overlap 2322003 2322002 2322000 ATACAGATAAATATT CAGCCCGAT ACCC ATCGGGCTG TTTTTCCTCGCTGAG YPK_2092 2322092 - 2323108 + | L-asparaginase, type I TERM 2392 2323767 - 2323742 - g 71 -10.5 -2.76696 | gap 1, opp_overlap 2323759, overlap 2323741 TGGCTCTTGAACAAT GCCTGGCTGAAG TCG CTTCAGCC-GAC TGATCGCTTTCTGCG YPK_2093 2323123 - 2323770 + | nicotinamidase TERM 2393 2323789 - 2323810 + T 100 -13 -5.47159 | opp_overlap 2323789 CTTTCTGCGCAAAAA TGGGCGCC TGCCTC GGCGCCCA TTTTTTGTATTCAGA TERM 2394 2323810 - 2323789 - T 100 -13 -4.56597 | opp_overlap 2323789 CTTTCTGCGCAAAAA TGGGCGCC TGCCTC GGCGCCCA TTTTTTGTATTCAGA YPK_2094 2324278 - 2323904 - | hypothetical protein YPK_2095 2324660 - 2324247 - | methionine-R-sulfoxide reductase TERM 2395 2324740 - 2324722 - H 82 -2.4 -5.70522 | AATAATAACAAAAAA TTAACAAC AAA GCAGTTAA AATTGTCCTAAACTG YPK_2096 2325008 - 2326003 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2396 2326030 - 2326047 + F 100 -11.3 -5.05116 | opp_overlap 2326030 AGATTTCTACCTAAA GCCACTC ACGC GAGTGGC TTTTCTTGTTTATAG TERM 2397 2326047 - 2326030 - f 90 -11.3 -3.65529 | opp_overlap 2326030 AGATTTCTACCTAAA GCCACTC ACGC GAGTGGC TTTTCTTGTTTATAG YPK_2097 2326327 - 2327202 + | aldose 1-epimerase TERM 2398 2327245 - 2327229 - T 100 -13.7 -5.0916 | opp_overlap 2327226 2327224 2327229 CGGTCAATATAAAAA TGGGGCC TTT GGCCCCA TGGTCTTGCTCATAG TERM 2399 2327229 - 2327245 + T 93 -13.7 -2.78495 | opp_overlap 2327229, overlap 2327226 2327224 CGGTCAATATAAAAA TGGGGCC TTT GGCCCCA TGGTCTTGCTCATAG YPK_2098 2328045 - 2327275 - | MltA-interacting MipA family protein YPK_2099 2328420 - 2328208 - | hypothetical protein TERM 2400 2328726 - 2328698 - g 72 -10.4 -3.01712 | opp_overlap 2328696 TCCTGCGTTTGAAGA GTTCTATGGCAT GGAGG AAGCCATAGAAC AGATTGTTTCTTATC YPK_2100 2328468 - 2330402 + | putative serine protein kinase, PrkA TERM 2401 2330504 - 2330447 - g 70 -9.9 -3.14307 | gap 1 AGGAAGGCAAAACTA TG-CACTACGTCCTTGGCGTTGCCGC TAACCAT GCTGTAACGCCAAGGACAAAGGGACA GTGTGAGGCCGGTGG YPK_2101 2330446 - 2330568 + | hypothetical protein YPK_2102 2330552 - 2331826 + | hypothetical protein TERM 2402 2331838 - 2331876 + F 78 -5.3 -4.9792 | opp_overlap 2331838 TTAGCAGCAATATCA GCCGGTTAATTTTTTCT TGTTC AGAAAGCATTTTCCGGC TTTTTCTATGGGCTA TERM 2403 2332420 - 2332435 + G 71 -6.8 -4.20084 | CAATTTGCCGGATTA TGGCCG ACGC TGGCCA TTTTAGGTGCCTGCT YPK_2103 2331934 - 2333052 + | hypothetical protein YPK_2104 2333992 - 2333087 - | LysR family transcriptional regulator TERM 2404 2334220 - 2334199 - g 80 -2.9 -5.3671 | AAGATAATGAAAAAA GTTCAAGGT ATTT ACCGTGCAC CTCGTCAACATTGGG YPK_2105 2334190 - 2335059 + | pirin domain-containing protein TERM 2405 2335085 - 2335121 + F 100 -15.4 -5.5112 | CCGCCATTACCTGTC TGCTATTACCTGTCTA CCCTC TGGGCAGGTAATAGCA TTTTTTATTGATGAG YPK_2106 2335324 - 2336517 + | Bcr/CflA subfamily drug resistance transporter TERM 2406 2336577 - 2336531 - T 83 -9.6 -3.98291 | opp_overlap 2336528, overlap 2336532 AACAACGGCAAATAA TCGCGTTACACGATATTAAC GGATGGG GTGAATATCGTGTAACGGGG CAATATTCAGTGGCT TERM 2407 2336576 - 2336532 - T 95 -13.1 -2.9789 | opp_overlap 2336528, overlap 2336531 ACAACGGCAAATAAT CGCGTTACACGATATTAAC GGATGGG GTGAATATCGTGTAACGGG GCAATATTCAGTGGC YPK_2107 2337850 - 2336546 - | D-amino-acid dehydrogenase TERM 2408 2337066 - 2337046 - G 78 -8.9 -3.97368 | overlap 2337058 CCTTCAATGGATAAA CCGGGATAG ACA CCAGCCCGG CCAGTAGCGCGGTAG TERM 2409 2338951 - 2338929 - g 74 -2.6 -5.0538 | CCGCACGCCAAAAAA GCCGTGAAGA ATA TCTACAAAGC CAAGTGAATTCCCTG YPK_2108 2338316 - 2339851 + | SpoVR family protein TERM 2410 2339898 - 2339882 - T 100 -10.1 -5.04385 | GACATCGGTAAAAAA GGGGCAT TAA ACGCCCC TCAGACTGCTGACAA YPK_2109 2340788 - 2340069 - | fatty acid metabolism transcriptional regulator FadR TERM 2411 2340401 - 2340419 + g 71 -3 -4.88736 | overlap 2340392 CCACTGTTTTCGCTC GCGCCAAA ATT TCTTGCGC TTTTTCTGGATGATG TERM 2412 2341365 - 2341376 + G 72 -5.8 -4.32857 | opp_overlap 2341365 ATCTACTTTATGAAA CAGC TGCT GCTG TTTGTATTTACGAAA TERM 2413 2341498 - 2341513 + G 75 -3.2 -5.00846 | overlap 2341499 TAATCGCGGTAGTTA TCAGCG TATC CGTTGG TTTTTATACTATTTA TERM 2414 2342196 - 2342207 + G 78 -5.8 -4.74917 | GCCTCGCCTTCCGCT CAGC TATC GCTG TTTTATCTGTTTAAT TERM 2415 2342383 - 2342395 + G 71 -4.7 -4.49316 | opp_overlap 2342384, overlap 2342384 CCGTGGCGACACCAA ACGGC CAG GCCGC TTTCTTGTTCCTGCT TERM 2416 2342394 - 2342384 - g 73 -8.2 -3.83026 | opp_overlap 2342384 2342383 CGTGGCGACACCAAA CGGC CAG GCCG CTTTCTTGTTCCTGC YPK_2110 2341032 - 2342606 + | Na+/H+ antiporter NhaB TERM 2417 2343398 - 2343416 + G 100 -11.7 -4.98522 | opp_overlap 2343398 TATCTTTATTATCAA TGGCGCC TCTCT GGCGCCA TTTTTATATCAGATT TERM 2418 2343416 - 2343398 - g 79 -11.7 -3.21416 | opp_overlap 2343398 TATCTTTATTATCAA TGGCGCC TCTCT GGCGCCA TTTTTATATCAGATT YPK_2111 2342842 - 2343483 + | disulphide bond formation protein DsbB YPK_2112 2343652 - 2343449 - | hypothetical protein TERM 2419 2343737 - 2343702 - R 73 -8.5 -3.66378 | opp_overlap 2343702 2343701 2343697 CAGATTGGATTGAAA TCAGATCAACAGA TTTTCCATCC CCTGTTGATCTGA GTTTCATTAGTCAAT YPK_2113 2344145 - 2343789 - | hypothetical protein TERM 2420 2344389 - 2344364 - H 70 -7.7 -3.65046 | opp_overlap 2344363 TGGCTATGTTAATAA TCATTATTCCT GCGC AGGAATAGTGA ATCTATTAAAGAAAA YPK_2114 2345237 - 2345977 + | hypothetical protein YPK_2115 2345994 - 2347193 + | aminotransferase class V TERM 2421 2348204 - 2348220 + G 93 -8.7 -5.0925 | GACTTGGTTTGTCGT TGCCTAC TTC GTGGGCA TTTTTGGTTTTCCGC YPK_2116 2347197 - 2348369 + | major facilitator transporter TERM 2422 2348436 - 2348415 - T 78 -8.7 -3.827 | AACAATGAAGGTAAA GATGGCAGC TTAG GCTGTCATC GGCTAAAGCAATTTA YPK_2117 2348916 - 2348470 - | hypothetical protein TERM 2423 2348980 - 2349011 + r 82 -7.9 -4.45693 | overlap 2348981 2348982 CTTACAGATGCAAGT TTTGCCGCCCGAC AGTAGA GTCGGACGGCACG TTTCTCTTTATATTA TERM 2424 2348981 - 2349010 + r 74 -9.2 -3.25789 | overlap 2348980 2348982 TTACAGATGCAAGTT TTGCCGCCCGAC AGTAGA GTCGGACGGCAC GTTTCTCTTTATATT TERM 2425 2348982 - 2349009 + r 86 -12.7 -2.53847 | overlap 2348981 2348980 TACAGATGCAAGTTT TGCCGCCCGAC AGTAGA GTCGGACGGCA CGTTTCTCTTTATAT YPK_2118 2349675 - 2349019 - | fumarylacetoacetate (FAA) hydrolase YPK_2119 2350831 - 2349746 - | lytic murein transglycosylase YPK_2120 2351244 - 2350972 - | hypothetical protein TERM 2426 2351739 - 2351728 - H 71 -3 -5.03145 | CAAGTGTTGAAAAAA TATG CAAT CATA AAATAGCGGCTGAGT TERM 2427 2351759 - 2351743 - H 74 -6.5 -4.55491 | TATGCAATCATAAAA TAGCGGC TGA GTCGCTA AATATAGGGGGTCAA TERM 2428 2352295 - 2352280 - g 73 -4.6 -4.70879 | overlap 2352272 2352282 GGTAAAGGCCAAAAA CTGGCT CCAG AGCCGG TCATCAGTCCGCCGG YPK_2121 2351965 - 2352651 + | septum site-determining protein MinC YPK_2122 2352676 - 2353488 + | septum site-determining protein MinD YPK_2123 2353492 - 2353761 + | cell division topological specificity factor MinE TERM 2429 2353773 - 2353804 + T 100 -17.5 -3.43117 | opp_overlap 2353776, overlap 2353776 ATGATTTCTTCTCAA TAACGCCCCTGTA TTTATT TACAGGGGCGTTA TTCTCAATTGACTGT TERM 2430 2353801 - 2353776 - T 100 -14.8 -3.61517 | opp_overlap 2353773 2353776 ATTTCTTCTCAATAA CGCCCCTGTA TTTATT TACAGGGGCG TTATTCTCAATTGAC TERM 2431 2353776 - 2353801 + T 100 -14.8 -3.84808 | opp_overlap 2353776, overlap 2353773 ATTTCTTCTCAATAA CGCCCCTGTA TTTATT TACAGGGGCG TTATTCTCAATTGAC TERM 2432 2353950 - 2353937 - T 73 -5.3 -4.61873 | opp_overlap 2353944 2353945, overlap 2353932 2353944 2353945 2353946 GTTCATAAATTAAAA CTGAA AAGT TTCAG CGTGGAATTAATATC TERM 2433 2353975 - 2353946 - T 70 -10.1 -2.54204 | opp_overlap 2353945 2353944 2353967, overlap 2353932 2353937 2353945 2353944 TTAAAACTGAAAAGT TTCAGCGTGGAAT TAAT ATCCCACCCTGAA GGCTGATTAATATCA YPK_2124 2355119 - 2353998 - | ribonuclease D TERM 2434 2354184 - 2354204 + g 77 -2.6 -5.24129 | opp_overlap 2354184, overlap 2354186 GACCGATTGAATCAA GGCTTTAA TATCT TTAAAGAC TTTTTTGTACCCCGG TERM 2435 2355224 - 2355260 + r 100 -14.6 -3.767 | gap 1, opp_overlap 2355225 2355227, overlap 2355225 2355226 2355230 2355233 ATAGTTCGATAACAA ACA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATGA TTTAGTGACTCCGTC TERM 2436 2355225 - 2355259 + r 100 -18.1 -2.85699 | gap 1, opp_overlap 2355225 2355227, overlap 2355224 2355226 2355230 2355233 TAGTTCGATAACAAA CA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATG ATTTAGTGACTCCGT TERM 2437 2355259 - 2355225 - R 100 -18.1 -4.31433 | gap 1, opp_overlap 2355225 2355224 2355226 2355230 2355233, overlap 2355227 TAGTTCGATAACAAA CA-CAACAACGCCGGT GATA ACCGGCGTTGTTGATG ATTTAGTGACTCCGT TERM 2438 2355226 - 2355257 + r 100 -17.4 -2.97667 | opp_overlap 2355225 2355227, overlap 2355225 2355224 2355230 2355233 AGTTCGATAACAAAC ACAACAACGCCGGT GATA ACCGGCGTTGTTGA TGATTTAGTGACTCC TERM 2439 2355256 - 2355227 - R 100 -20.9 -3.75817 | opp_overlap 2355226 2355225 2355224 2355230 2355233, overlap 2355225 GTTCGATAACAAACA CAACAACGCCGGT GATA ACCGGCGTTGTTG ATGATTTAGTGACTC TERM 2440 2355230 - 2355253 + r 100 -16.8 -3.34227 | opp_overlap 2355227 2355225, overlap 2355226 2355225 2355224 2355233 CGATAACAAACACAA CAACGCCGGT GATA ACCGGCGTTG TTGATGATTTAGTGA TERM 2441 2355233 - 2355250 + r 100 -12.7 -3.79909 | opp_overlap 2355227 2355225, overlap 2355230 2355226 2355225 2355224 TAACAAACACAACAA CGCCGGT GATA ACCGGCG TTGTTGATGATTTAG YPK_2125 2356967 - 2355279 - | AMP-dependent synthetase and ligase TERM 2442 2357416 - 2357399 - R 100 -12.7 -4.64844 | TGTAGATATAGAAAA GGCGCTG GACT CAGCGCC TCTGACTGCTGACAA TERM 2443 2357493 - 2357467 - R 84 -10.1 -3.79519 | gap 1, opp_overlap 2357476, overlap 2357468 2357483 AACGGTAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2444 2357494 - 2357468 - R 72 -10.1 -2.87229 | gap 1, opp_overlap 2357476, overlap 2357467 2357483 ACGGTAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2445 2357572 - 2357589 + r 100 -9.1 -4.82901 | gap 1 TTGTCAATAACCTCA GGCGCTGG ACT CC-GCGCC TTTTTGTGGCCCAAA YPK_2126 2358215 - 2357610 - | Slp family outer membrane lipoprotein YPK_2127 2359050 - 2358352 - | peptidase M22 glycoprotease YPK_2128 2361026 - 2359122 - | helicase c2 TERM 2446 2359851 - 2359862 + g 78 -5.8 -4.7497 | opp_overlap 2359850 2359851 CGCTGAGGTGAAAAT CCAG GTGC CTGG TTTTTCCTCAATCAA TERM 2447 2360448 - 2360429 - G 100 -10 -4.82901 | opp_overlap 2360417 TGTCCGCCAGAAAAA GATGGTGG TTTA CCACCACC ACATCAGCATCCATC TERM 2448 2360464 - 2360477 + g 74 -9.5 -3.53012 | ACATCAGCATCCATC GCCCG ACGA CGGGC TTTCACCACAAAACA YPK_2129 2361157 - 2361501 + | endoribonuclease L-PSP TERM 2449 2361671 - 2361698 + T 70 -9.8 -2.52015 | opp_overlap 2361672, overlap 2361670 AAGCCACAAAAACAA AGGAGAGTAGCC GCCA GGCTACCCTCCG CTTACTGCCTCTGGC TERM 2450 2361697 - 2361672 - T 100 -15.5 -4.97405 | opp_overlap 2361671 2361670 AGCCACAAAAACAAA GGAGAGTAGCC GCCA GGCTACCCTCC GCTTACTGCCTCTGG YPK_2130 2362047 - 2361718 - | small multidrug resistance protein YPK_2131 2362477 - 2362034 - | small multidrug resistance protein TERM 2451 2363139 - 2363113 - R 100 -11.6 -5.03314 | opp_overlap 2363111 2363117 2363118 2363129, overlap 2363118 GCGATTCTGAAAAAA CAAAACCCCTGC AAT GCAGAGGCTCTG TCTTTGGTGAAAATA TERM 2452 2363134 - 2363118 - R 100 -10.1 -5.42198 | opp_overlap 2363118 2363117 2363111 2363129, overlap 2363113 TCTGAAAAAACAAAA CCCCTGC AAT GCAGAGG CTCTGTCTTTGGTGA YPK_2132 2363833 - 2363192 - | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YPK_2133 2364031 - 2363840 - | hypothetical protein TERM 2453 2364021 - 2364056 + g 73 -9.7 -3.42574 | overlap 2364023 2364024 TGCTCTCCCTGGCAG TCACGCGCCATCAGA TTCGCC TCTGGTGGCGCGCTA TTATCGTGCGGTTAG TERM 2454 2364023 - 2364054 + g 85 -12.3 -3.28219 | overlap 2364021 2364024 CTCTCCCTGGCAGTC ACGCGCCATCAGA TTCGCC TCTGGTGGCGCGC TATTATCGTGCGGTT TERM 2455 2364024 - 2364053 + g 100 -15.8 -2.56449 | overlap 2364023 2364021 TCTCCCTGGCAGTCA CGCGCCATCAGA TTCGCC TCTGGTGGCGCG CTATTATCGTGCGGT YPK_2134 2365559 - 2364075 - | glucose-6-phosphate 1-dehydrogenase YPK_2135 2365876 - 2366781 + | RpiR family transcriptional regulator TERM 2456 2367997 - 2367947 - g 71 -3.9 -4.68908 | gap 1, overlap 2367973 GGTATCCAAAAGAAA CTGATCCGCCGTGCCCGCCAGC TAAACCGT GCCGT-GATCACGGCGACTCAG ATGATGGAGTCAATG YPK_2136 2367143 - 2368585 + | pyruvate kinase TERM 2457 2368641 - 2368610 - Tf 100 -10.8 -4.46757 | overlap 2368615 AAGATAGGCAGAAAA GCAAAGGCCCGCTA TCAC TAGCGGGCCTCAGA CTGCTGACAAACCCC TERM 2458 2368636 - 2368615 - Tf 100 -15.9 -4.27483 | overlap 2368610 AGGCAGAAAAGCAAA GGCCCGCTA TCAC TAGCGGGCC TCAGACTGCTGACAA TERM 2459 2368725 - 2368699 - Tf 84 -10.1 -3.82218 | gap 1, opp_overlap 2368708, overlap 2368700 2368715 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2460 2368726 - 2368700 - Tf 72 -10.1 -2.88849 | gap 1, opp_overlap 2368708, overlap 2368699 2368715 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2461 2368804 - 2368825 + GT 100 -15.9 -4.36595 | opp_overlap 2368800 2368799 TTGTCAATAACCTCA GGCCCGCTA TCAC TAGCGGGCC TTTTACCTTTAACTG YPK_2138 2369887 - 2368925 - | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YPK_2137 2368738 - 2369019 + | hypothetical protein TERM 2462 2370114 - 2370080 - TR 100 -15.2 -3.74077 | overlap 2370085 GCTGACAGACTGAAA CTAAACTGCCAGTG CTCAACT CACTGGCAGCTTAG GGATAAACACACCGA TERM 2463 2370109 - 2370085 - TR 100 -11.5 -4.09556 | overlap 2370080 CAGACTGAAACTAAA CTGCCAGTG CTCAACT CACTGGCAG CTTAGGGATAAACAC TERM 2464 2370147 - 2370124 - TR 73 -8.8 -3.5511 | overlap 2370122 2370126 GCTTAGGGATAAACA CACCGACAGG CTAA CCTGACGGTA TCACTGCTAATCCAG TERM 2465 2370145 - 2370126 - TR 74 -9.2 -3.34988 | overlap 2370124 2370122 TTAGGGATAAACACA CCGACAGG CTAA CCTGACGG TATCACTGCTAATCC YPK_2139 2371470 - 2370154 - | peptidase M23B TERM 2466 2371378 - 2371358 - G 83 -8.2 -4.60797 | GGGTGATAGATAAAA GGCCGCCA AACAG CGACGGCC AGTGTCATTACAGTC TERM 2467 2371422 - 2371396 - G 73 -10.1 -3.14468 | TGTCATTACAGTCAA CGACCCCAACA TGATG CGATGGGGTCG AGGAAGATTGTTATA YPK_2140 2372447 - 2371491 - | periplasmic solute binding protein TERM 2468 2372833 - 2372817 - g 74 -4.3 -5.00616 | opp_overlap 2372825 CCGGGGGTGAAAAAA GCCGACA TTC TGCCTGC ACTCACACGGGTGCA YPK_2141 2372520 - 2373281 + | ABC transporter related TERM 2469 2373335 - 2373348 + G 75 -5.9 -4.61566 | CTGGCAACAGCCGCT GGCCC GCTG GGGTC TTTTGTCGTTTGGCG YPK_2142 2373278 - 2374063 + | ABC-3 protein TERM 2470 2374121 - 2374063 - T 72 -9.8 -2.85803 | gap 1, opp_overlap 2374067 2374068, overlap 2374115 AAAAGCACGAGGATA GTCAT-CACTTCACGCTGTGGGGTTTA GGCCTA TAACCCCCACAGCGTGAAACGTATTAT TCTTCCCGAGTAATA TERM 2471 2374067 - 2374117 + T 89 -10.6 -3.94877 | gap 1, opp_overlap 2374063 2374115, overlap 2374068 GCACGAGGATAGTCA T-CACTTCACGCTGTGGGGTTTA GGCCTA TAACCCCCACAGCGTGAAACGTA TTATTCTTCCCGAGT TERM 2472 2374068 - 2374115 + T 100 -15.7 -3.56318 | opp_overlap 2374063, overlap 2374067 CACGAGGATAGTCAT CACTTCACGCTGTGGGGTTTA GGCCTA TAACCCCCACAGCGTGAAACG TATTATTCTTCCCGA YPK_2143 2375122 - 2374118 - | Holliday junction DNA helicase RuvB YPK_2144 2375899 - 2375285 - | Holliday junction DNA helicase RuvA TERM 2473 2375529 - 2375543 + g 73 -5.6 -4.56597 | opp_overlap 2375531, overlap 2375531 TTCATTTCGACCACT AACCGC TCG GCGGTC TTTTTACCGACACCC TERM 2474 2375531 - 2375541 + g 73 -8.2 -3.90048 | opp_overlap 2375531, overlap 2375529 CATTTCGACCACTAA CCGC TCG GCGG TCTTTTTACCGACAC TERM 2475 2375846 - 2375863 + g 77 -6.3 -4.58663 | gap 1 ACCGTTTGTTTCCAG CAG-CACC AGC GGTGGCTG TTTTTCCAGAATGAT TERM 2476 2376148 - 2376167 + r 83 -12.2 -2.79831 | opp_overlap 2376124 2376148 TTATAGCATAAAAAA GGCTGGAT GGAT ATCCAGCC TGTGATAACAGTTAA TERM 2477 2376167 - 2376148 - R 100 -12.2 -5.34555 | opp_overlap 2376148, overlap 2376124 TTATAGCATAAAAAA GGCTGGAT GGAT ATCCAGCC TGTGATAACAGTTAA YPK_2145 2376727 - 2376206 - | crossover junction endodeoxyribonuclease RuvC YPK_2146 2377679 - 2376936 - | hypothetical protein TERM 2478 2377632 - 2377646 + g 75 -5.6 -4.66537 | overlap 2377622 2377634 GCGTTTGGCATCCTG TGCCGC TTT GCGGTG TTTTGTGTTGGCCCA TERM 2479 2377634 - 2377644 + g 73 -8.2 -3.94773 | overlap 2377622 2377632 GTTTGGCATCCTGTG CCGC TTT GCGG TGTTTTGTGTTGGCC YPK_2147 2378180 - 2377737 - | NUDIX hydrolase TERM 2480 2377813 - 2377799 - G 78 -11.4 -3.0263 | AGGACTTGGTCAATA CGGCAG CCT CTGCCG CATCCAACCACTGGT YPK_2148 2379976 - 2378180 - | aspartyl-tRNA synthetase TERM 2481 2379890 - 2379877 - G 73 -2.3 -5.16841 | GCATATCAATAAAAA TCAGG CCAC CCAGA TCACGACGACGGTTA TERM 2482 2380184 - 2380211 + H 77 -8.6 -3.92542 | opp_overlap 2380187, overlap 2380187 ACTTTATTGTTTTAT TAACGCGTTA TGTTGTAT TAACGCGTTA TTGTTTCAACCTCAG YPK_2149 2380839 - 2381654 + | hypothetical protein YPK_2150 2381834 - 2382229 + | hypothetical protein TERM 2483 2382289 - 2382305 + F 100 -10.8 -4.46072 | GCAACCGTTAGTCTG GGCGGC ATATC GCCGCC TTTATGTTTATTCCC TERM 2484 2383142 - 2383126 - g 70 -2.1 -4.94992 | opp_overlap 2383125, overlap 2383127 GGAAACCCACAAAAA TCGTCTG CAT CAGGCGG GGTTTGAACACGCGG YPK_2151 2382419 - 2383222 + | methyltransferase YPK_2152 2383219 - 2384190 + | methyltransferase TERM 2485 2384220 - 2384196 - T 100 -10 -4.80959 | TAAGCCATAAGAAAA TCCCCCAACT CACCC AGATGGGGGA TACCGTTCGTTATAT YPK_2153 2385147 - 2384383 - | CutC family protein TERM 2486 2384974 - 2384957 - G 74 -2.7 -5.06414 | gap 1, overlap 2384960 CTGCTGTAACAAAAA TCA-CCAC CAC GTGGCCGA ACTATCGGATGAACC YPK_2154 2385954 - 2385379 - | hypothetical protein YPK_2155 2386571 - 2388301 + | arginyl-tRNA synthetase TERM 2487 2388327 - 2388314 - T 100 -9.5 -5.07107 | TAAATCGTCAAAAAA GGCCC CTCG GGGCC TTAAAAAACGATTAG YPK_2156 2393263 - 2388368 - | filamentous haemagglutinin domain-containing protein TERM 2488 2390413 - 2390427 + g 72 -5.7 -4.42238 | overlap 2390403 TAACCAACGCTAACG CGTCA TTGTC TGACG TTTTGGTTCGACTGC TERM 2489 2391357 - 2391381 + g 91 -7.2 -5.19261 | overlap 2391358 GCAGTAGAAGTATTC TTGGTGGTAT GCATA ATACCGCCAG TTTTTTGATCCCTTT TERM 2490 2391358 - 2391380 + g 71 -8.5 -3.6993 | overlap 2391357 CAGTAGAAGTATTCT TGGTGGTAT GCATA ATACCGCCA GTTTTTTGATCCCTT YPK_2157 2394954 - 2393293 - | hemolysin activator HlyB domain-containing protein TERM 2491 2394228 - 2394185 - G 77 -8.2 -4.30576 | opp_overlap 2394201, overlap 2394189 2394191 2394221 CGGTTAGCATTAAAA TTAATAGCGTCAGATAGCCC AAAT GGGCTATCTAAAGCCAGTGA CACTCTTGCTTGCCA TERM 2492 2394224 - 2394189 - G 93 -13.4 -3.72743 | opp_overlap 2394201, overlap 2394185 2394191 2394221 TAGCATTAAAATTAA TAGCGTCAGATAGCCC AAAT GGGCTATCTAAAGCCA GTGACACTCTTGCTT TERM 2493 2394222 - 2394191 - G 91 -13.8 -3.43546 | opp_overlap 2394201, overlap 2394189 2394185 2394221 GCATTAAAATTAATA GCGTCAGATAGCCC AAAT GGGCTATCTAAAGC CAGTGACACTCTTGC TERM 2494 2394735 - 2394746 + g 80 -4.4 -5.23316 | overlap 2394742 TTGGCTGGCATATTT TCTC TGGG GAGA TTTTTTCCTGTGATG TERM 2495 2395311 - 2395327 + r 71 -9.4 -2.96538 | opp_overlap 2395311 TAAATATGTAAAAAA GCCCGA AATTA TCGGGC TATATAATACATTAT TERM 2496 2395327 - 2395311 - R 100 -9.4 -5.18561 | opp_overlap 2395311 TAAATATGTAAAAAA GCCCGA AATTA TCGGGC TATATAATACATTAT YPK_2158 2397014 - 2395386 - | integral membrane protein MviN TERM 2497 2396814 - 2396802 - G 89 -6.2 -5.28826 | AAATGCCACAAAAAA GGCG TCCGT CGCC ATACCTGCACCAAAT TERM 2498 2396984 - 2396960 - G 78 -12.2 -2.60615 | opp_overlap 2396963, overlap 2396959 2396957 2396963 ATGTGCTGTAAATAC CAACGCCTAC GGTCT GCAGGCGTTG CTCTACCCAATGGGG TERM 2499 2397327 - 2397347 + r 71 -8.9 -3.32844 | GTTCCAATGTCGTTT GCCAGCCGG GAG CAGGTTGGC TTATCACCTGCCCCG TERM 2500 2397914 - 2397900 - R 85 -7.1 -4.88736 | TACTATGGACAAAAA CGGCA TCACT TGCCG CAGCGAGCGTATCCA TERM 2501 2398163 - 2398200 + r 78 -5.5 -5.0133 | opp_overlap 2398162, overlap 2398165 TGACAACTGGATAAC CTGCTGTTCAAGCTGGG CAAC CCTAGCTTCAAGGGCTG TTTTTTCAAGGGCTA TERM 2502 2398165 - 2398198 + r 71 -6.7 -4.13561 | opp_overlap 2398162, overlap 2398163 ACAACTGGATAACCT GCTGTTCAAGCTGGG CAAC CCTAGCTTCAAGGGC TGTTTTTTCAAGGGC YPK_2161 2399402 - 2398818 - | GCN5-related N-acetyltransferase YPK_2162 2399696 - 2400901 + | major facilitator transporter TERM 2503 2400907 - 2400954 + F 79 -10.8 -3.14931 | gap 1, opp_overlap 2400920 CAGCAGCTAACGTTA TGTCCCTTATCAACCGGAGACGT TTT GCCTTTCCGGTTGATAAGC-ACA TTCCTCGCGCATACG TERM 2504 2401455 - 2401443 - g 71 -4.9 -4.62302 | GAATACCTGCAAAAA CATAA TAA TTATG AAAAACAGATCGGTA TERM 2505 2401898 - 2401857 - g 73 -8.7 -3.80625 | GGGTTAGAAGTTAAA CCGGGCCAATTAGTCATCC CATT GACTGACTAACCGGCGCAG GTCATTTCACGCTAC YPK_2163 2401326 - 2401889 + | hypothetical protein TERM 2506 2401964 - 2401932 - T 76 -7.8 -4.19817 | overlap 2401933 CCCATCTACCCAAAA TCATTCGCTTGC AACAAAACA GCAAGCGAATGC ATCCCGATGAATCTA TERM 2507 2401963 - 2401933 - T 84 -11.3 -3.11569 | overlap 2401932 CCATCTACCCAAAAT CATTCGCTTGC AACAAAACA GCAAGCGAATG CATCCCGATGAATCT YPK_2164 2402903 - 2402343 - | cytoplasmic chaperone TorD family protein YPK_2165 2403677 - 2402940 - | phosphotransferase domain-containing protein TERM 2508 2403846 - 2403830 - R 73 -7.3 -4.16016 | overlap 2403842 GTATCCCTCAATAAA TGCCGAT GAA ATCAGCA AATTGCTATAACTTT TERM 2509 2404085 - 2404065 - R 87 -8.2 -4.56978 | opp_overlap 2404065 CCGCCAAATAATAAA CCCCGACC TTTAT GGTTGGGG TTTTTCTTTTGCATC TERM 2510 2404065 - 2404085 + r 100 -10.4 -5.48213 | opp_overlap 2404065 CCGCCAAATAATAAA CCCCGACC TTTAT GGTTGGGG TTTTTCTTTTGCATC TERM 2511 2404194 - 2404207 + r 76 -2.5 -5.252 | opp_overlap 2404204 TGTATCAATCACTGT TTTAT ATCA ATAAA TTTTTTATACCAGTA YPK_2166 2405424 - 2404312 - | ROK family protein YPK_2167 2406268 - 2405438 - | glycerophosphoryl diester phosphodiesterase YPK_2168 2406482 - 2407549 + | ABC transporter related TERM 2512 2408209 - 2408220 + G 85 -7.2 -4.87665 | TTTATCGGTGCACTG GGCG ATTT CGCC TTTTTCTCGGTCGCC YPK_2169 2407546 - 2408412 + | binding-protein-dependent transport systems inner membrane component YPK_2170 2408409 - 2409245 + | binding-protein-dependent transport systems inner membrane component YPK_2171 2409265 - 2410347 + | extracellular solute-binding protein TERM 2513 2410435 - 2410463 + F 75 -10.3 -2.87564 | overlap 2410431 TCCCTGGCGGGTACA GTCGCTGTATTGT TCG ACGAAACGGCGAC TGTATCAGCGAATGA YPK_2172 2410648 - 2411523 + | glycerophosphoryl diester phosphodiesterase TERM 2514 2411505 - 2411519 + F 74 -10 -3.18452 | TGACTCCCCCGCCAC CGCCAA AAA TTGGCG TTAAATTCACCTAAT TERM 2515 2411768 - 2411789 + F 100 -6.5 -5.95166 | CAAATTCAAAAATAA GGTTCTGAC GAAA GTCGGGGCC TTTTTTTTGGTTACA TERM 2516 2412837 - 2412881 + G 76 -8.3 -4.05816 | overlap 2412832 2412874 GGGATCGTGATCGCA GTCAGCGGTGGTTCCCGCTAC AGC GTATCCGGCCCCACCGCAGCC TTTGTGGTCATTTTG YPK_2174 2412618 - 2414315 + | sulfate transporter TERM 2517 2414359 - 2414336 - T 81 -5.2 -5.1861 | opp_overlap 2414349, overlap 2414337 TTGATTATCAAAAAA GGCAGCTTAG TTAC CTACGCTGCG TGAGGTTATTGACAA TERM 2518 2414358 - 2414337 - T 75 -8.7 -3.70443 | opp_overlap 2414349, overlap 2414336 TGATTATCAAAAAAG GCAGCTTAG TTAC CTACGCTGC GTGAGGTTATTGACA TERM 2519 2414437 - 2414463 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 2414426, overlap 2414432 2414438 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2520 2414438 - 2414464 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 2414426, overlap 2414432 2414437 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 2521 2414527 - 2414550 + T 100 -11 -5.46657 | overlap 2414518 2414523 TTGTCAGCAGTCTGA GGCAGCTTAG TTGC CTACGCTGCC TTTTTTATTGCCCTA YPK_2175 2415522 - 2414668 - | 2-dehydro-3-deoxyphosphooctonate aldolase YPK_2176 2416427 - 2415618 - | SirB1 protein YPK_2177 2416825 - 2416424 - | invasion gene expression up-regulator SirB YPK_2178 2417719 - 2416889 - | protein-(glutamine-N5) methyltransferase, release factor-specific YPK_2179 2418801 - 2417719 - | peptide chain release factor 1 TERM 2522 2418445 - 2418426 - G 80 -7.1 -4.60487 | opp_overlap 2418440, overlap 2418428 TATCACCGGCAAAAA TAGCGGC TTCATC GCCGCCA GTCCCCGCGCGGATT YPK_2180 2420150 - 2418834 - | glutamyl-tRNA reductase YPK_2181 2420402 - 2421025 + | outer membrane lipoprotein LolB YPK_2182 2421027 - 2421959 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YPK_2183 2422081 - 2422209 + | hypothetical protein YPK_2184 2422269 - 2423216 + | ribose-phosphate pyrophosphokinase TERM 2523 2423351 - 2423386 + T 80 -9 -3.92577 | opp_overlap 2423356, overlap 2423356 TTGAAGCAGATAAAG AAAAACCCGTTGAAGC CTGT GCGACAACGGGTTTTC TGTTTTTGAAGATTC TERM 2524 2423356 - 2423381 + T 100 -8.9 -4.98672 | opp_overlap 2423356, overlap 2423351 GCAGATAAAGAAAAA CCCGTTGAAGC CTGT GCGACAACGGG TTTTCTGTTTTTGAA TERM 2525 2423381 - 2423356 - T 100 -8.9 -5.42975 | opp_overlap 2423351 2423356 GCAGATAAAGAAAAA CCCGTTGAAGC CTGT GCGACAACGGG TTTTCTGTTTTTGAA YPK_2185 2423690 - 2423418 - | hypothetical protein TERM 2526 2423917 - 2423887 - H 93 -12.1 -3.68836 | opp_overlap 2423884 ATATTTAGCCAAGAA GTTGAATGATTCC GAAGG GAAATCATTCAAC TATACAATTATTTTT TERM 2527 2424486 - 2424502 + G 73 -7.3 -4.18018 | opp_overlap 2424486 TCCTGGTGATAAAAG CAAAGTC ACT GGCTTTG TTTTGGGTAAACCCC YPK_2186 2424022 - 2424642 + | aminoacyl-tRNA hydrolase YPK_2187 2424807 - 2425898 + | GTP-binding protein YchF TERM 2528 2425961 - 2425978 + F 100 -11.3 -5.52079 | opp_overlap 2425961 AAAAATGCTATAAAA TCCACGC AATT GCGTGGA TTTTTGTTTTCATAT TERM 2529 2425978 - 2425961 - f 100 -11.3 -4.47485 | opp_overlap 2425961 AAAAATGCTATAAAA TCCACGC AATT GCGTGGA TTTTTGTTTTCATAT YPK_2188 2426005 - 2426847 + | hypothetical protein YPK_2189 2427749 - 2427054 - | hypothetical protein TERM 2530 2427255 - 2427245 - G 73 -3.2 -4.83615 | CACGCCCCATAAAAA CAGA CAC TCCG TATACCGCAATACTG TERM 2531 2427326 - 2427312 - G 83 -7.1 -4.73682 | opp_overlap 2427311, overlap 2427323 CGCCAGAAGAGAAAA TGGCG AAATA CGCCA GATTTTACAGAAAAA YPK_2190 2428429 - 2427764 - | flavodoxin YPK_2191 2429711 - 2428620 - | alpha/beta fold family hydrolase TERM 2532 2429894 - 2429865 - H 93 -8.7 -4.46112 | overlap 2429861 2429844 2429867 2429868 TGTCAGTTAAAGAAA TACTTTCCTGACA AAAA TGTCAGGAAAATG TCAGCCTGGTGTTGG TERM 2533 2429892 - 2429867 - H 95 -11.3 -3.83744 | overlap 2429861 2429844 2429865 2429868 TCAGTTAAAGAAATA CTTTCCTGACA AAAA TGTCAGGAAAA TGTCAGCCTGGTGTT TERM 2534 2429891 - 2429868 - H 89 -12.6 -2.89523 | overlap 2429861 2429844 2429867 2429865 CAGTTAAAGAAATAC TTTCCTGACA AAAA TGTCAGGAAA ATGTCAGCCTGGTGT TERM 2535 2430575 - 2430564 - g 76 -7.2 -4.3739 | GAGGTGGCGATAAAA CGCC TGCG GGCG AAAATAGATACGCCC YPK_2192 2429976 - 2430668 + | two component heavy metal response transcriptional regulator TERM 2536 2431363 - 2431340 - g 71 -4.4 -4.67904 | overlap 2431342 GATGAACTGCAAAAA CTGGCCGTCG CATT CAACGGCGTG CTCGAACGGCAGGAA YPK_2193 2430680 - 2432065 + | heavy metal sensor signal transduction histidine kinase TERM 2537 2432163 - 2432187 + F 82 -8.6 -4.30104 | opp_overlap 2432168, overlap 2432163 2432166 TTTTGCATACAGGTT TAAGAGGAGG ATCTC CCTCCTCTTC TTCTTTCTTGCTTTA TERM 2538 2432166 - 2432184 + F 91 -10.3 -4.22676 | opp_overlap 2432168, overlap 2432163 2432163 TGCATACAGGTTTAA GAGGAGG ATCTC CCTCCTC TTCTTCTTTCTTGCT YPK_2194 2432342 - 2432764 + | carboxymuconolactone decarboxylase YPK_2195 2432819 - 2433289 + | cupin 2 domain-containing protein TERM 2539 2434107 - 2434117 + G 73 -3.2 -4.87133 | CGTAGTGGATAAATC TGGC CCG GCTA TTTTGTTTACACACT YPK_2196 2433502 - 2434575 + | hypothetical protein TERM 2540 2434610 - 2434583 - f 85 -4 -5.5112 | opp_overlap 2434583 2434580, overlap 2434584 TTCAGTAATAAAAAA TTAGTGGGGTCG TTGA CGGCTCCACTAC TGCTTATATACTCGT TERM 2541 2434609 - 2434584 - f 70 -7.5 -3.89587 | opp_overlap 2434583 2434580, overlap 2434583 TCAGTAATAAAAAAT TAGTGGGGTCG TTGA CGGCTCCACTA CTGCTTATATACTCG TERM 2542 2434696 - 2434665 - f 84 -10.9 -3.63515 | opp_overlap 2434664 2434663 GGCTACGCTCAACAA CCCCAGGTACTTA TTTATG TAAGCGCCTGGGG ACTTACTTCGTTGCC YPK_2197 2435355 - 2436260 + | hypothetical protein TERM 2543 2437029 - 2437013 - g 83 -2.2 -5.59357 | overlap 2437024 ATGAGATCAAAAAAA GCTATC GAAAA GATCGC ACACAATCATAAAGC YPK_2198 2436266 - 2437198 + | hypothetical protein YPK_2199 2437185 - 2438135 + | hypothetical protein TERM 2544 2438129 - 2438147 + F 70 -9.6 -2.78695 | opp_overlap 2438128 2438127, overlap 2438128 CATGAGTCCAAAACC CCGCTAAT ATA GTTAGCGG ATTACTTTATCTCAA YPK_2200 2438181 - 2438324 + | hypothetical protein TERM 2545 2438412 - 2438441 + F 87 -8.5 -4.57353 | gap 1, opp_overlap 2438412 AACTTAGTGACTCAA GCCGGGAGTGGCGG TCT TC-TCACACCCGGC TTTTATCTAATAGCC TERM 2546 2439515 - 2439499 - g 72 -10.9 -2.52023 | opp_overlap 2439508, overlap 2439498 2439496 2439502 2439504 GATGGATATCAATAC CAACAGC CTT GCTGTTG CCAGCAATCGCATTG YPK_2203 2439260 - 2439919 + | methyltransferase type 12 YPK_2204 2440692 - 2440054 - | ribose/galactose isomerase YPK_2205 2443050 - 2440939 - | Sel1 domain-containing protein YPK_2206 2443413 - 2443255 - | hypothetical protein TERM 2547 2443911 - 2443893 - g 73 -2.5 -5.04385 | gap 1 TATACGCGGAAAAAA TCAA-GAG TTTG CTCGTTGA GATCTTAAGTGAACG YPK_2207 2443628 - 2445790 + | Sel1 domain-containing protein YPK_2208 2445854 - 2447572 + | hypothetical protein TERM 2548 2447609 - 2447631 + F 77 -6.3 -4.65933 | TGGCAATATTGAGGA GCAGGCAAT TAAAT GTTGTCTGC TTTCTTTTAAAGATG YPK_2209 2447742 - 2448206 + | hypothetical protein YPK_2210 2449554 - 2448367 - | UDP-glycosyltransferase family protein YPK_2211 2450135 - 2449551 - | hypothetical protein TERM 2549 2449603 - 2449591 - G 73 -5.5 -4.63486 | ACTGCCGCAATAAAA CGCTC ACA AAGCG TCAGTAATGCTGGGT YPK_2212 2451286 - 2450132 - | putative glycosyl transferase YPK_2213 2452248 - 2451286 - | NAD-dependent epimerase/dehydratase TERM 2550 2452208 - 2452189 - G 74 -9.2 -3.727 | GTCATGACAGGCAAA GCGGCGCA TAAA TGCCCCGC CAATAAACCCCGATG YPK_2214 2453668 - 2452382 - | adenylate-forming enzyme YPK_2215 2454471 - 2453665 - | beta-lactamase domain-containing protein YPK_2216 2455480 - 2454464 - | NAD-dependent epimerase/dehydratase YPK_2217 2456501 - 2455494 - | Beta-ketoacyl-acyl-carrier-protein synthase I TERM 2551 2456556 - 2456569 + H 70 -8.1 -3.65351 | GCCAGTGAGTGGCTG GGGAG AAAT CTCCC TTTGGCTGCCCCTAA TERM 2552 2458795 - 2458770 - g 71 -6.9 -4.14392 | CGGTAAGGTGCAAAA TCTGGCCTC CTGTCTGC AAGGCCAGA TACAAAAAGGCATCA TERM 2553 2459025 - 2458997 - g 78 -5.3 -4.89477 | CCCGTAAGAATAAAA GATTTGGATTACG AGC CGGAACCGAAATC ACCCATCAAGCAGAC YPK_2218 2457139 - 2459124 + | chorismate binding-like protein YPK_2219 2459874 - 2459302 - | hypothetical protein YPK_2220 2461244 - 2459874 - | formiminoglutamate deiminase YPK_2221 2461392 - 2462159 + | histidine utilization repressor TERM 2554 2462208 - 2462230 + F 70 -7.1 -3.9009 | TTACGCAATTGTGAA TTCGCTATC TTGCT GATAGTGAA TTTATAGGCTAGGTT YPK_2222 2462363 - 2463583 + | imidazolonepropionase YPK_2223 2463580 - 2464386 + | N-formylglutamate amidohydrolase TERM 2555 2464537 - 2464521 - T 71 -4.3 -4.80882 | overlap 2464524 AGCTCACAGTAAAAA GACGGGA TTC CCCCACC TTTCAGGCTGCTGAC TERM 2556 2464881 - 2464900 + T 86 -10.6 -3.82789 | opp_overlap 2464882, overlap 2464882 TGCCAATAACCTCAA AGGCGGGG TTTC CCCCGCCG TTCTATCTTTCTATT TERM 2557 2464882 - 2464899 + T 95 -14.1 -2.88047 | opp_overlap 2464882, overlap 2464881 GCCAATAACCTCAAA GGCGGGG TTTC CCCCGCC GTTCTATCTTTCTAT TERM 2558 2464899 - 2464882 - T 100 -14.1 -3.72051 | opp_overlap 2464882 2464881 GCCAATAACCTCAAA GGCGGGG TTTC CCCCGCC GTTCTATCTTTCTAT TERM 2559 2465006 - 2464988 - T 71 -4.6 -4.58395 | TCTACTGCTTAAAAA CGGTAA GTCAAGT TTACCG CAACAACATCATCCG YPK_2224 2466063 - 2464981 - | porin YPK_2225 2467813 - 2466821 - | succinylglutamate desuccinylase YPK_2226 2469217 - 2467874 - | succinylarginine dihydrolase TERM 2560 2469029 - 2469040 + g 71 -7.2 -4.07877 | CGGCCGCTCCTGAGG GGGG AGAA CCCC TTGTTTGTAGCCTAA TERM 2561 2469107 - 2469083 - G 90 -12.9 -3.63515 | opp_overlap 2469070 TTTCATCTTCAATAA CCCTTGTTTGG CTG CCAAACGAGGG TTGGAAGTACGATTT YPK_2227 2470758 - 2469241 - | succinylglutamic semialdehyde dehydrogenase TERM 2562 2470345 - 2470355 + g 71 -8.2 -3.70902 | CACTGACATGCTGTC CCCC ATT GGGG TTTGGCTATGGCCGG TERM 2563 2470584 - 2470571 - G 81 -9.5 -4.09685 | GCCCATGCCGGAAAA GCCGC TCTT GCGGC ATGGCAGGCCAGAGT YPK_2228 2471807 - 2470755 - | arginine N-succinyltransferase TERM 2564 2471491 - 2471478 - G 71 -4.5 -4.58663 | opp_overlap 2471478 ATCATTGCTCAAAAA CAGTG TCGG CACCG ATTTATACACATTGA TERM 2565 2471836 - 2471848 + r 74 -6.3 -4.57073 | opp_overlap 2471835 2471836, overlap 2471824 GCCTACGGCATAAAC GTTAC GAC GTAAC TTTTTGACAAACCTG YPK_2229 2473177 - 2471837 - | succinylornithine transaminase family protein YPK_2230 2473684 - 2473559 - | hypothetical protein YPK_2231 2475001 - 2473700 - | GntR family transcriptional regulator TERM 2566 2473914 - 2473952 + g 73 -5.3 -4.57837 | opp_overlap 2473923 2473925, overlap 2473922 2473923 2473925 GGCTCCAATTCTAAC CATAAGAAATAGCCGCC AGCGG GGTGGCTGATTTTGATG TTTTTGGGGAAGTGT TERM 2567 2476153 - 2476137 - g 70 -2.2 -4.87803 | opp_overlap 2476140 GAGTCGTAAATAAAA CCGCTG ATTTA CAACAG AAAAATCAGGTTTTG YPK_2232 2475431 - 2477212 + | integral membrane sensor signal transduction histidine kinase TERM 2568 2477728 - 2477742 + F 75 -8.5 -3.74693 | TTATTTATCGTTAAC CGGGC CTAAT GCCCG TTTAATACAGTAAAG YPK_2233 2477779 - 2478879 + | calcium/proton exchanger TERM 2569 2478899 - 2478923 + F 100 -14.3 -5.60993 | opp_overlap 2478899 CGTCTGAATAGCAAA GGGCAAGCGCT GTT AACGCTTGCCC TTTTTTTGTGCCCAG TERM 2570 2478923 - 2478899 - f 100 -16.5 -3.92324 | opp_overlap 2478899 CGTCTGAATAGCAAA GGGCAAGCGCT GTT AACGCTTGCCC TTTTTTTGTGCCCAG TERM 2571 2478943 - 2478961 + F 100 -16 -3.07307 | opp_overlap 2478943 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2572 2478961 - 2478943 - f 100 -16 -4.36914 | opp_overlap 2478943 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_2234 2479074 - 2479532 + | transposase IS200-family protein TERM 2573 2479610 - 2479634 + T 100 -9.9 -4.47158 | opp_overlap 2479613, overlap 2479612 2479613 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGTGTATTCT TERM 2574 2479612 - 2479632 + T 100 -12.5 -3.82374 | opp_overlap 2479613, overlap 2479610 2479613 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGTGTATT TERM 2575 2479631 - 2479613 - T 100 -16 -4.8048 | opp_overlap 2479612 2479610 2479613 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTGTAT TERM 2576 2479613 - 2479631 + T 100 -16 -2.87798 | opp_overlap 2479613, overlap 2479612 2479610 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGTGTAT YPK_2235 2480499 - 2479711 - | PhoH family protein YPK_2236 2480837 - 2480559 - | hypothetical protein TERM 2577 2480792 - 2480802 + g 77 -4 -5.07652 | AACGAGTCGCTTGAG TCAA TCT TTGA TTTTGTTTTAACAGC YPK_2237 2482175 - 2481276 - | GCN5-related N-acetyltransferase YPK_2238 2482938 - 2482471 - | haemin storage system, HmsS protein TERM 2578 2482788 - 2482763 - G 77 -10.5 -3.54459 | GCAATCGTCGTCAAA CCGCTGAGAAT ATAA ATCCTCAACGG TATCGGCCCCATATG YPK_2239 2484269 - 2482935 - | glycosyl transferase family protein YPK_2240 2486280 - 2484259 - | polysaccharide deacetylase TERM 2579 2485325 - 2485343 + g 71 -4.5 -4.54306 | opp_overlap 2485326, overlap 2485326 AGATAATCCAAATCA ACATGCG CCACC CGCATGA TATTTTTTTCTTGCA TERM 2580 2485626 - 2485638 + g 75 -3.4 -5.09259 | GCTTAAAGGCTTCAA CAGT TTCAT ACTG TTTTGTTTTGGGATC YPK_2241 2488767 - 2486293 - | TPR repeat-containing protein TERM 2581 2486725 - 2486711 - G 86 -7.8 -4.84359 | opp_overlap 2486710 2486718 TTACCGTCAGAAAAA CGCGAC GGC GTCACG CTAAGTTCAGCATCA YPK_2242 2490653 - 2489436 - | peptidase M24 TERM 2582 2490255 - 2490270 + g 71 -4 -4.66609 | gap 1 CTTATCCAGCACTCC CGCATCT TCA AG-TGCG TTTTTGACTAAACTA TERM 2583 2490299 - 2490323 + g 77 -2.8 -5.32882 | gap 1, overlap 2490299 2490300 TAAAGACCGCTTCCA C-TGGTGGGCC AATA GGCCGATCACG TTTTTTATAATGATG YPK_2243 2491681 - 2490794 - | tellurite resistance protein TehB TERM 2584 2491026 - 2491053 + g 77 -8.6 -4.1523 | CCGGGTAAAGTACAC TCCTGCATATTA CTGA TAATATGTGGGA TTCTTTCTGGTTGCA YPK_2244 2492168 - 2491854 - | cytochrome c class I YPK_2245 2492662 - 2492165 - | redoxin domain-containing protein YPK_2246 2493365 - 2492652 - | ABC transporter related YPK_2247 2494550 - 2493369 - | hypothetical protein TERM 2585 2493445 - 2493428 - G 71 -9.1 -3.61398 | GTCGGGTGGGAACAA TCGCCGC CACA GCGGCAA CAAACAACGAAAGCA TERM 2586 2493623 - 2493637 + g 73 -10 -3.33744 | overlap 2493628 GGATAATGTCACGCC CACTGG CAC CCAGTG CTTTTTGCAACGCAA TERM 2587 2493628 - 2493638 + g 77 -6.8 -4.56597 | overlap 2493623 ATGTCACGCCCACTG GCAC CCA GTGC TTTTTGCAACGCAAA TERM 2588 2493785 - 2493767 - G 71 -8.8 -3.62046 | opp_overlap 2493767 2493764, overlap 2493768 TTATCTTGTCAAGAA CCTGCCCC TCA GAGGCAGA TACTTTGCGAATTGG TERM 2589 2493784 - 2493768 - G 71 -10.1 -2.77013 | opp_overlap 2493767 2493764, overlap 2493767 TATCTTGTCAAGAAC CTGCCCC TCA GAGGCAG ATACTTTGCGAATTG YPK_2248 2495832 - 2494540 - | hypothetical protein YPK_2249 2497244 - 2495835 - | YHS domain-containing protein TERM 2590 2496873 - 2496858 - G 74 -9 -3.69333 | TATAACCCAGCCAAA TGCCAC CACG GTGGCA GCCAGATTGAGCAAT YPK_2250 2497404 - 2497267 - | hypothetical protein YPK_2251 2498056 - 2497529 - | hypothetical protein YPK_2252 2500179 - 2498260 - | iron permease FTR1 TERM 2591 2499274 - 2499293 + g 75 -7.8 -4.26461 | AAAGTAGGCATCCTG CACCGCCA TCAT TGCCGGTG TTATTTTCCCTTGCT TERM 2592 2499923 - 2499938 + g 77 -4.6 -5.00616 | ATTTCGCCAAAGGCC GCCTCC ATCT GGAAGC TTTTTTGCGCGGAGA TERM 2593 2500312 - 2500297 - R 71 -3.2 -5.00884 | opp_overlap 2500297 ATTTTTTTCAAAAAA TGCGTA CTGA TGCGCA ATTTACCCCACCAAT TERM 2594 2500544 - 2500512 - R 100 -15 -5.72622 | gap 1, opp_overlap 2500508 2500512 2500515 GCCAGAAAGAAAAAA CTGGCAGTG-GCTGC TTTC GCAACACACTGCCAG TCACTTTTATTTCAA TERM 2595 2500512 - 2500544 + r 91 -12.8 -2.88887 | gap 1, opp_overlap 2500512, overlap 2500508 2500515 GCCAGAAAGAAAAAA CTGGCAGTG-GCTGC TTTC GCAACACACTGCCAG TCACTTTTATTTCAA TERM 2596 2500589 - 2500579 - R 70 -2.6 -5.07567 | TTATATTTCAAAAAA TTAA ATT TTAA CAGCAACTTACTTGC TERM 2597 2500694 - 2500668 - R 84 -10.1 -3.82218 | gap 1, overlap 2500669 2500684 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2598 2500695 - 2500669 - R 72 -10.1 -2.88849 | gap 1, overlap 2500668 2500684 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 2599 2500770 - 2500790 + r 84 -5.4 -5.25803 | overlap 2500771 2500786 ACTTTGTCAATAACC TCCAGCAA CTTAC TTGCTGGC TTTTTTATCCAGATT TERM 2600 2500771 - 2500789 + r 78 -8.9 -3.74397 | overlap 2500770 2500786 CTTTGTCAATAACCT CCAGCAA CTTAC TTGCTGG CTTTTTTATCCAGAT YPK_2253 2502419 - 2500779 - | major facilitator transporter TERM 2601 2500906 - 2500919 + g 70 -8.1 -3.81146 | AAACCGAATTTCAGC GCACG TAAC CGTGC TTCTTCATTCACCCG TERM 2602 2501586 - 2501599 + g 75 -8.1 -4.30416 | TGTAATCACGTCCAG CGCCA GTAA TGGCG TTTTACCTTGCTCCT YPK_2254 2503537 - 2502530 - | glutaminase TERM 2603 2505098 - 2505131 + G 73 -4.7 -4.7373 | GGACAGAGATGATCT GTTAGTGGTAACCAA CGAC TTTGTTATTGCTAAC TTTTTGATCGAATCC YPK_2255 2504748 - 2505518 + | DeoR family transcriptional regulator TERM 2604 2505833 - 2505799 - f 73 -3.7 -4.96845 | ATAAAAATAAATAAA TCTTATTCCATGGGT TAGAT ACATATGAAATAAGA TAAAATGCAATATAA TERM 2605 2506492 - 2506504 + G 71 -2.7 -4.93365 | GGTTTATCTGGTTTG TGGAA TTT TTTCA TTTTTCATTCTCCGG TERM 2606 2506908 - 2506920 + G 71 -4.7 -4.49556 | GTATTCATTTGATTA CCGAC AAC GGCGG TTTCTTTCCTCACGG YPK_2256 2506283 - 2507812 + | amino acid permease-associated region YPK_2257 2509192 - 2508008 - | GntR family transcriptional regulator TERM 2607 2509915 - 2509925 + G 78 -5.4 -4.98255 | CCACTGTGCAATATT TGGT GCA ACCA TTTTTATGGTTCAGC YPK_2258 2509544 - 2510143 + | NADH:ubiquinone oxidoreductase, subunit E YPK_2259 2511392 - 2510448 - | LysR family transcriptional regulator TERM 2608 2510851 - 2510869 + g 77 -10.3 -3.4582 | opp_overlap 2510851, overlap 2510849 GCCTGCCGTAACGCA CTGTCGG CGGTA CCGACAG TATTTGCTAACGTCG TERM 2609 2510869 - 2510851 - G 72 -11 -2.52464 | opp_overlap 2510851 2510849 GCCTGCCGTAACGCA CTGTCGGC GGT ACCGACAG TATTTGCTAACGTCG YPK_2260 2511504 - 2512373 + | amidohydrolase 2 TERM 2610 2512411 - 2512385 - f 73 -2.5 -5.16681 | gap 2, overlap 2512388 TTAAAAATAACAAAA TAACT--TGTGAG GTG CTCACAAGAGTTA AAAAGCCAGTCTGTA TERM 2611 2512406 - 2512388 - f 100 -11.8 -4.59946 | overlap 2512385 AAAATAACAAAATAA CTTGTGAG GTG CTCACAAG AGTTAAAAAGCCAGT TERM 2612 2512941 - 2512982 + F 70 -5.7 -4.33274 | opp_overlap 2512939, overlap 2512940 TACTATCAGAGGAGT GGGCGTGGCGCGCATTATT CTGG ATTGGTGTGCTTCCCGCCC TTTTAGTACTCTACA YPK_2263 2513888 - 2514448 + | hypothetical protein TERM 2613 2514697 - 2514719 + G 73 -2 -5.10208 | overlap 2514699 GGGACATTTCTCGTT TATTCCGC AAGGCGA GTGGAATG TTTTTATTCCCATTG YPK_2264 2514473 - 2514946 + | putative lipoprotein TERM 2614 2514950 - 2514962 + T 71 -3.3 -5.03145 | overlap 2514951 GATAGCCAATAATTT TGCTC TTG GGGCG TTTTTTAACCGATTG YPK_2265 2515899 - 2515021 - | LysR family transcriptional regulator TERM 2615 2515078 - 2515056 - G 100 -16.3 -3.03635 | CAAAGTTTCTTAATA CCGGCGAGG TATCC CCTCGCCGG TACGCCAACGCGAGC TERM 2616 2515959 - 2515925 - H 78 -9.4 -3.61541 | overlap 2515923 AAAAGCAATTAAACA CACCGGTATCATATAT TGG ATAAATGATAACGGCG ACCATAGACTAAGCG TERM 2617 2516799 - 2516823 + G 86 -13.6 -3.01416 | gap 1, overlap 2516822 CTGTTGCACGTCAGG CCCGC-CGGGT ACTT ACCCGAGCGGG TATCTCTGCCTGATA YPK_2266 2515994 - 2516836 + | HpcH/HpaI aldolase YPK_2267 2516778 - 2517428 + | dehydratase YPK_2268 2517451 - 2518773 + | acetyl-CoA hydrolase/transferase YPK_2269 2519600 - 2520232 + | two component LuxR family transcriptional regulator TERM 2618 2520307 - 2520333 + F 100 -14.5 -3.31931 | overlap 2520300 TGCGTACCGTACTCT GCTGCCTGCTA CTGAT TAGCGGGCAGC TTCATGCTTCTCTAA TERM 2619 2521247 - 2521262 + F 71 -3.2 -4.99638 | TCCGTGACCGCCGGA CCGG AGAAATGG CCGG TTTTTCTGTCGATCT TERM 2620 2524236 - 2524254 + F 100 -3.8 -5.95166 | opp_overlap 2524236 TTCCCCTATTAAAAG CGCCAG TCTTTTC TTGGCG TTTTTTTTGATTCAG YPK_2272 2524588 - 2525118 + | fimbrial protein TERM 2621 2525623 - 2525633 + G 73 -5.4 -4.58395 | opp_overlap 2525600 TGATCGTCAATAACC GACT AAA AGTC TTTTTCCGCCCTGCA YPK_2273 2525211 - 2525942 + | pili assembly chaperone TERM 2622 2526714 - 2526740 + G 71 -2.9 -4.87273 | GGCAGTGAAATTACG CTGGGTGAAAC CTTCA GTTCCGGCCAG TTTTTCTCCAGTCTT TERM 2623 2528328 - 2528317 - g 75 -5.8 -4.52781 | TAATCACAATTAAAA TGCC CGAT GGCA GCCAATTGCCTATGG YPK_2274 2525991 - 2528582 + | fimbrial biogenesis outer membrane usher protein YPK_2275 2528598 - 2529947 + | hypothetical protein TERM 2624 2530437 - 2530423 - g 78 -5.8 -4.66163 | opp_overlap 2530422 2530425 ATTTTCACTTAAAAA TATTGA TAA TCAATA CGTTATAATCGCGAA YPK_2276 2529944 - 2530684 + | pili assembly chaperone YPK_2277 2532514 - 2531372 - | ABC transporter related YPK_2278 2533366 - 2532539 - | binding-protein-dependent transport systems inner membrane component TERM 2625 2532747 - 2532730 - G 73 -8.5 -3.80174 | AGAGCGTTAGAACAA TCTGGAA TTCG TTCCAGA TAAAGAACAGTGTCA YPK_2279 2534219 - 2533359 - | binding-protein-dependent transport systems inner membrane component TERM 2626 2534285 - 2534245 - R 70 -7.7 -3.6279 | gap 1, overlap 2534246 AAACCTGCGTAAGAA TTTCATTTCCGTCAGTGC GCAACT GCACTGACGGAAA-GCGA TTAACGGGACAACGC TERM 2627 2534286 - 2534246 - R 72 -9.9 -2.77192 | gap 1, overlap 2534245 AACCTGCGTAAGAAT TTCA-TTTCCGTCAGTGC GCAACT GCACTGACGGAAAGCGAT TAACGGGACAACGCT YPK_2280 2535554 - 2534286 - | extracellular solute-binding protein YPK_2281 2536597 - 2535584 - | oxidoreductase domain-containing protein YPK_2282 2536736 - 2536599 - | hypothetical protein TERM 2628 2536835 - 2536801 - H 100 -15.3 -3.88232 | gap 1, overlap 2536827 2536830 TCGTTTACAGAACAA TGATGGTGCTCTTGAG CAAA CTCAA-AGCACCATCA CGGTGCGTAAGGTTC TERM 2629 2536841 - 2536827 - H 72 -7.8 -3.87149 | opp_overlap 2536840, overlap 2536801 2536830 TTGAGCAAACTCAAA GCACCA TCA CGGTGC GTAAGGTTCGCTTTA YPK_2283 2537011 - 2537220 + | hypothetical protein YPK_2284 2538058 - 2537261 - | GntR family transcriptional regulator YPK_2285 2538075 - 2538236 + | hypothetical protein YPK_2286 2538349 - 2538245 - | putative transposase YPK_2287 2538609 - 2538403 - | hypothetical protein YPK_2288 2539027 - 2539461 + | hypothetical protein YPK_2289 2539473 - 2540042 + | hypothetical protein TERM 2630 2540134 - 2540163 + F 86 -11.7 -3.31428 | gap 1, overlap 2540130 2540133 2540131 CAAACAGGTACTCAG TAGCTCTGATT-AG TAA CTCAATCAGAGCTA TCTATTGTATTTAAA YPK_2290 2540230 - 2540403 + | hypothetical protein TERM 2631 2540486 - 2540465 - T 84 -10.1 -3.74693 | CGCCACTGTATTAAA GGTGATCGC TCAG GCGGTCACC AAACTCGATAATAAA YPK_2291 2540798 - 2540460 - | transposase YPK_2292 2541658 - 2540798 - | transposase mutator type YPK_2293 2542782 - 2541706 - | hypothetical protein TERM 2632 2542249 - 2542263 + g 70 -10 -3.1211 | AACGATCTCATTTCT CCACTC TTT GAGTGG TTCGATAGTCTCATG TERM 2633 2542728 - 2542758 + g 72 -11.2 -2.72511 | overlap 2542727 CACTTTCCTTATATT GTTCCCGAATTCTT TGT AAGTATCCGGGAAC CTTTGGGGGGATGCA YPK_2294 2543138 - 2542848 - | hypothetical protein TERM 2634 2542992 - 2543002 + g 70 -2.4 -4.90296 | overlap 2542974 GTTTGCCAGTTTTGG CCGG CCA CGGG TTTTTATCACCTTTT YPK_2295 2543391 - 2543140 - | hypothetical protein TERM 2635 2543671 - 2543687 + G 83 -7.2 -4.8048 | overlap 2543667 AATTGGTTAACCCTG CGCGCC GGGCG GGTGCG TTTTTGGTCTGCGCC YPK_2296 2543422 - 2543781 + | baseplate assembly protein V YPK_2297 2543778 - 2544077 + | GPW/gp25 family protein TERM 2636 2544857 - 2544872 + G 73 -3.3 -4.89233 | GTTAACAATGCTCAC TACTC CCCTTT GAGTA TTTTTGGTGTTGGTA TERM 2637 2545164 - 2545184 + G 71 -7.5 -4.05747 | overlap 2545165 2545174 GACATTTCAGATTGC ATCCCATCG GCC CGATGGGGG TTTCTATGGGGTGTA TERM 2638 2545165 - 2545183 + G 74 -11 -3.02966 | overlap 2545164 2545174 ACATTTCAGATTGCA TCCCATCG GCC CGATGGGG GTTTCTATGGGGTGT YPK_2298 2544818 - 2545336 + | hypothetical protein YPK_2299 2545317 - 2545595 + | hypothetical protein TERM 2639 2545617 - 2545649 + F 71 -10 -2.62614 | overlap 2545616 2545633 2545637 CACTTTCCTGTTAAT GGTAACCACTCTAT ATCGC GTAAAGTGGTTACC CGTTTTATAGTTTTC YPK_2300 2545760 - 2546929 + | tail sheath protein YPK_2301 2546941 - 2547456 + | phage major tail tube protein TERM 2640 2547463 - 2547482 + F 70 -7.8 -3.6512 | GGCCTGTAATATCAC GGTGCGGA TAAC TCCGTGCC TTTACCCCTTATTTA YPK_2302 2547510 - 2547857 + | tail E family protein TERM 2641 2548842 - 2548876 + G 79 -11.5 -3.25093 | gap 1, overlap 2548840 2548843 CTGGTGAATCTGGCA GCGGCGGGTGATATCG ATCT CGGTATCACC-GCCGA TATTGCTTCCAATAT TERM 2642 2548843 - 2548875 + G 89 -15 -2.54574 | gap 1, overlap 2548842 2548840 TGGTGAATCTGGCAG CGGCGGGTGATATCG ATCT CGGTATCACC-GCCG ATATTGCTTCCAATA TERM 2643 2550433 - 2550394 - g 72 -5.7 -4.37658 | overlap 2550395 2550398 2550415 AACGCTCTGACAAAA CCCA-GGCACTGGCGCAGG CAAG CCCA-GCCACTGCCGCGGG CCCAGGTAACTACGG TERM 2644 2550604 - 2550634 + G 73 -10.5 -3.13432 | gap 2, opp_overlap 2550613 CACAAGTCACCAGCC GCCGCAACACCGCCG CTA TGGCG--GTTGCGGC TTCCATGCTATTCAG YPK_2303 2547984 - 2550899 + | TP901 family phage tail tape measure protein YPK_2304 2550911 - 2551375 + | P2 GpU family protein YPK_2305 2551372 - 2552466 + | late control D family protein YPK_2306 2552541 - 2552756 + | transcriptional activator Ogr/delta TERM 2645 2552791 - 2552804 + T 100 -9.5 -5.9873 | TTACCCGACTTTTAT CCCGC TTTC GCGGG TTTTTTTTATGGTGC TERM 2646 2552899 - 2552886 - T 100 -9.5 -5.71983 | TTAATCACAAAAAAA CCGCC TCTC GGCGG TTAACGACATACTCG YPK_2307 2554114 - 2553107 - | integrase family protein YPK_2308 2554634 - 2554122 - | hypothetical protein TERM 2647 2554370 - 2554387 + g 71 -2.7 -4.93595 | opp_overlap 2554370 TAGGAATAAAAATAT TGGTTAA TTCT TTCACCA TTTTTGAATTTTTAT YPK_2309 2555334 - 2554696 - | hypothetical protein YPK_2310 2555744 - 2555352 - | XRE family transcriptional regulator YPK_2311 2555823 - 2556014 + | hypothetical protein YPK_2312 2556027 - 2556230 + | putative DNA-binding protein YPK_2313 2556242 - 2556448 + | phage-like protein YPK_2314 2556445 - 2556759 + | hypothetical protein YPK_2315 2556744 - 2556890 + | hypothetical protein YPK_2316 2556901 - 2557161 + | hypothetical protein YPK_2317 2557192 - 2557497 + | hypothetical protein YPK_2318 2557580 - 2558341 + | hypothetical protein TERM 2648 2558348 - 2558376 + F 74 -8.1 -3.93166 | opp_overlap 2558349, overlap 2558349 AAAAAATAAATACAT ATCCCTTTGGCGC ATT GCGTTAGAGGGAG TTAATTTTTTAGGGG TERM 2649 2558349 - 2558375 + F 83 -11.6 -2.95177 | opp_overlap 2558349, overlap 2558348 AAAAATAAATACATA TCCCTTTGGCGC ATT GCGTTAGAGGGA GTTAATTTTTTAGGG YPK_2319 2558398 - 2559051 + | exonuclease RNase T and DNA polymerase III TERM 2650 2559823 - 2559781 - g 81 -12.7 -2.65815 | TTGATATTCACAGCA TTACCGCCCCCCGCTCTGC CAGTT GCAAAGCTGGTGGCCGTAA GGCAGTAGGTGAAAT YPK_2320 2559048 - 2559866 + | DNA adenine methylase TERM 2651 2560654 - 2560633 - g 71 -8.7 -3.64703 | overlap 2560643 GCGCGCCTACGGAAA CGCCATCAA TGCT TCGACGGCG GAAGCGTCCATAAGG YPK_2321 2559863 - 2560726 + | C-5 cytosine-specific DNA methylase TERM 2652 2560757 - 2560789 + G 87 -11.2 -4.21607 | overlap 2560759 2560760 2560762 GCCGCATCACCCCAA CTCCACCGCTGCCT TATCC GGGCAGCGGTGATG TTTCTATTAAATGGG TERM 2653 2560759 - 2560787 + G 88 -12.4 -3.70511 | overlap 2560757 2560760 2560762 CGCATCACCCCAACT CCACCGCTGCCT TATCC GGGCAGCGGTGA TGTTTCTATTAAATG TERM 2654 2560760 - 2560786 + G 100 -15.9 -2.81584 | overlap 2560759 2560757 2560762 GCATCACCCCAACTC CACCGCTGCCT TATCC GGGCAGCGGTG ATGTTTCTATTAAAT TERM 2655 2560762 - 2560784 + G 83 -12.7 -2.94681 | overlap 2560760 2560759 2560757 ATCACCCCAACTCCA CCGCTGCCT TATCC GGGCAGCGG TGATGTTTCTATTAA TERM 2656 2560833 - 2560850 + G 71 -8.5 -3.72576 | overlap 2560822 TGCCCCGCGCCCCGC GATTGGT GGTC ACCAATC TTTAGTGCCGGCCGC TERM 2657 2561186 - 2561140 - g 95 -13.3 -3.88559 | gap 1, opp_overlap 2561145 2561148, overlap 2561145 AATCATGGTGATAAA CATACCAATGCATTCTTAACCG GTAC CGGC-AAGAATGCATTGTTACG TCTGGATGCCGTGCG TERM 2658 2561181 - 2561145 - g 88 -14 -2.59797 | gap 1, opp_overlap 2561145 2561148, overlap 2561140 TGGTGATAAACATAC CAATGCATTCTTAACCG GTAC CGGC-AAGAATGCATTG TTACGTCTGGATGCC TERM 2659 2561145 - 2561181 + G 79 -11.8 -3.1355 | gap 1, opp_overlap 2561140 2561145, overlap 2561148 TGGTGATAAACATAC CAATGCATTCTTAACCG GTAC CGGC-AAGAATGCATTG TTACGTCTGGATGCC TERM 2660 2563018 - 2563006 - g 100 -10.5 -4.63527 | overlap 2563008 GCATCAGCCGAAAAA GCCGC CCA GCGGC GAGAAAAAACCGCAC YPK_2322 2560723 - 2563278 + | replication gene A YPK_2323 2563259 - 2563489 + | phage-like protein YPK_2324 2563486 - 2563830 + | putative bacteriophage protein GP46 TERM 2661 2563952 - 2563978 + T 100 -9.5 -5.37593 | gap 2, opp_overlap 2563952 TCACCCCACACCAAA GCGCCTC-C-ACG CCA CGTAGAGAGGCGC TTTTTTCATTTCACC TERM 2662 2563978 - 2563952 - T 81 -9.5 -3.83998 | gap 2, opp_overlap 2563952 TCACCCCACACCAAA GCGCCTC-C-ACG CCA CGTAGAGAGGCGC TTTTTTCATTTCACC TERM 2663 2564308 - 2564318 + T 71 -8.2 -3.54181 | overlap 2564302 CTGATTTTCGAGGTG GCCG TTG CGGC TTGCTCTTTTAAAAT TERM 2664 2564383 - 2564364 - T 76 -10.8 -2.69031 | opp_overlap 2564363 2564362, overlap 2564363 2564361 AAATAAAATCAATAG GCTTGTGA CATG TCACAAGC AATTTAATTTTCATC TERM 2665 2564490 - 2564476 - T 91 -7.8 -4.85433 | ATATAAATGCAAAAA CCGCCT AAA AGACGG TTAGCATATGCATAA YPK_2325 2565544 - 2564513 - | PBSX family phage portal protein TERM 2666 2565509 - 2565520 + g 75 -5.8 -4.5081 | overlap 2565503 GCTTTTTACTATTGC CGCA GTAT TGCG TTTATTTCGCTGTTT YPK_2326 2566266 - 2565541 - | hypothetical protein TERM 2667 2565680 - 2565706 + g 71 -10.2 -2.82519 | overlap 2565684 TTACCGGCGATATCC TCAATGGTGACG TTT TGGCACCATTGA TAATTGCTCTCCTGC YPK_2327 2568029 - 2566266 - | hypothetical protein TERM 2668 2566406 - 2566393 - G 73 -4.5 -4.71426 | gap 1, overlap 2566394 2566395 CTGCTAGTAACAAAA GTGGCG TTT CGCC-C AGTGGCGGTCATGGT TERM 2669 2567072 - 2567058 - G 71 -9.2 -3.49475 | CTTATCCTCACATAA CCGGCC TCC GGCCAG CCGTGGGTAGCTGAC TERM 2670 2567228 - 2567240 + g 71 -4.7 -4.56597 | ATGCCATGCCCGAAG CGGCG CGG CGCAG TTTTTGAAAGCCGGG TERM 2671 2567519 - 2567505 - G 74 -4.2 -4.91109 | TTCCCATGAGAAAAA GTAGGT TGC ACCGAC TTGACGGGATTTTAA YPK_2328 2568200 - 2569015 + | capsid scaffolding YPK_2329 2569052 - 2570107 + | P2 family phage major capsid protein TERM 2672 2570561 - 2570542 - g 73 -7 -4.25104 | opp_overlap 2570542 CTTGGCCGATGAAAA GCCGCTGG ATAC CCCGCAGC TATTGCGCGCCCAGC YPK_2330 2570114 - 2570767 + | small terminase subunit TERM 2673 2570923 - 2570908 - f 73 -8.2 -3.71527 | GCCTAATCACCCAAA CGCCCC GGCG AGGGCG GCACGCTGGCTAACC TERM 2674 2571304 - 2571318 + G 75 -7.8 -4.21194 | overlap 2571306 ACTCGCATTCAGTTG TACCGC ACC GCGGTG TTTTGCCTGATGCAA TERM 2675 2571306 - 2571316 + G 71 -8.2 -3.70674 | overlap 2571304 TCGCATTCAGTTGTA CCGC ACC GCGG TGTTTTGCCTGATGC YPK_2331 2571001 - 2571492 + | head completion protein YPK_2332 2571492 - 2571695 + | tail X family protein YPK_2333 2571725 - 2572111 + | hypothetical protein YPK_2334 2572098 - 2572493 + | bacteriophage P7 related protein YPK_2335 2572498 - 2572920 + | putative LysB-like protein YPK_2336 2573019 - 2573486 + | P2 phage tail completion R family protein TERM 2676 2573547 - 2573557 + G 73 -8.2 -3.92373 | overlap 2573546 AATTGGCCCCACAGG CGCG CGG CGCG TTTATGCGTCAGGTC YPK_2337 2573483 - 2573929 + | phage virion morphogenesis protein YPK_2338 2574178 - 2573948 - | hypothetical protein TERM 2677 2574118 - 2574106 - G 80 -4.8 -5.1523 | TTGACAACACAAAAA CCAG CACTT CTGG AATAGCCAAGAACAA YPK_2339 2574261 - 2574962 + | hypothetical protein YPK_2340 2575172 - 2575050 - | hypothetical protein TERM 2678 2575149 - 2575171 + g 77 -10.6 -3.55761 | opp_overlap 2575147, overlap 2575150 GAAGTAAAACCTATG AGGTAGCTGT TTT ACAGCTACCA TTTGAAAACTCCATA TERM 2679 2575150 - 2575170 + g 88 -14.1 -2.73243 | opp_overlap 2575147, overlap 2575149 AAGTAAAACCTATGA GGTAGCTGT TTT ACAGCTACC ATTTGAAAACTCCAT TERM 2680 2575437 - 2575453 + G 83 -7.2 -4.8048 | overlap 2575433 AATTGGTTAACCCTG CGCGCC GGGCG GGTGCG TTTTTGGTCTGCGCC TERM 2681 2575501 - 2575522 + G 95 -12.3 -4.46212 | overlap 2575502 TCATGGTGATCAGTA TCGGTGGTG AGCT CACCACCGG TTTTGTGCTGCCCGC TERM 2682 2575502 - 2575521 + G 91 -13.6 -3.27406 | overlap 2575501 CATGGTGATCAGTAT CGGTGGTG AGCT CACCACCG GTTTTGTGCTGCCCG YPK_2341 2575293 - 2575928 + | phage baseplate assembly protein V YPK_2342 2575925 - 2576278 + | GPW/gp25 family protein YPK_2343 2576281 - 2577189 + | baseplate J family protein YPK_2344 2577182 - 2577790 + | phage tail protein I YPK_2345 2577787 - 2579226 + | hypothetical protein YPK_2346 2579237 - 2579716 + | hypothetical protein TERM 2683 2579723 - 2579751 + F 100 -14.6 -4.24786 | opp_overlap 2579730 GTCGTATAGGCTTGC CCATCAACCCCG CCAGT CGGGGTTGTTGG TTTCTCTGTTGTGCC YPK_2347 2579850 - 2581025 + | tail sheath protein YPK_2348 2581037 - 2581552 + | phage major tail tube protein TERM 2684 2581559 - 2581578 + F 90 -11.4 -3.6512 | opp_overlap 2581558 2581555 GGCCTGTAATATCAC GGTGCGGA TAAC TCCGCGCC TTTACCCCTTATTTA YPK_2349 2581606 - 2581953 + | tail E family protein TERM 2685 2582645 - 2582635 - g 71 -8.2 -3.64162 | overlap 2582628 AGCAATCAGCGCAAA GCGG TAG CCGC CGGATTAGGGTATAC TERM 2686 2584529 - 2584490 - g 72 -5.7 -4.37658 | overlap 2584491 2584494 2584511 AACGCTCTGACAAAA CCCA-GGCACTGGCGCAGG CAAG CCCA-GCCACTGCCGCGGG CCCAGGTAACTACGG TERM 2687 2584700 - 2584730 + G 73 -10.5 -3.13432 | gap 2, opp_overlap 2584709 CACAGGTCACCAGCC GCCGCAACACCGCCG CTA TGGCG--GTTGCGGC TTCCATGCTATTCAG YPK_2350 2582080 - 2584995 + | TP901 family phage tail tape measure protein YPK_2351 2585007 - 2585471 + | P2 GpU family protein YPK_2352 2585468 - 2586562 + | late control D family protein YPK_2353 2586637 - 2586852 + | transcriptional activator Ogr/delta TERM 2688 2586887 - 2586900 + T 100 -9.5 -5.44119 | TTACCCGATGCTCAT CCCGC TTTT GCGGG TTTTTTTCGCCTAGA TERM 2689 2587027 - 2587014 - T 100 -9.5 -6.02919 | CCAGAAACAAAAAAA CCGCC TCTC GGCGG TTAACGACATACTCG TERM 2690 2587114 - 2587134 + T 76 -10.5 -2.90714 | opp_overlap 2587113, overlap 2587117 CGCACAGCCATAAGC CGAGGGATT TTA AATCCCTTG TGTCTACCGATTTCA TERM 2691 2587117 - 2587131 + T 73 -8.6 -3.5947 | opp_overlap 2587113, overlap 2587114 ACAGCCATAAGCCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 2692 2587329 - 2587345 + T 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA YPK_2354 2588064 - 2587516 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YPK_2355 2589976 - 2588123 - | excinuclease ABC, C subunit YPK_2356 2590604 - 2589948 - | two component LuxR family transcriptional regulator TERM 2693 2590406 - 2590393 - GH 73 -5.3 -4.57569 | opp_overlap 2590393 2590391, overlap 2590401 GTATCCGGCGAAAAA CGTAA AATT TTACG TGTTGCTTCCAACCC TERM 2694 2590864 - 2590854 - H 78 -4 -5.14477 | CATACATTCAAAAAA CTAA TTA TTAG CATTAGATAAGTTAA TERM 2695 2591379 - 2591360 - g 71 -8.6 -3.64822 | gap 1, overlap 2591364 ACTCTGTTACTGAAA GCGATCGGC CAA GCCGAT-GC TGGGAAAGTAATCTT YPK_2357 2591267 - 2591491 + | hypothetical protein YPK_2358 2591619 - 2591960 + | GlpM family protein YPK_2359 2592242 - 2591988 - | hypothetical protein TERM 2696 2592556 - 2592530 - R 85 -5.9 -5.18357 | gap 1, overlap 2592507 CAACTGATGAAAAAA CAGCCGCA-CAG TGAA CTAATACGGCTG TTATTATTATATAGA YPK_2360 2593133 - 2592582 - | virulence-related outer membrane protein TERM 2697 2595491 - 2595502 + G 73 -2.2 -5.00895 | opp_overlap 2595480 AATCCATCTACAAAA TGCC AGCC GGTA TTTTTATGTCATGGG TERM 2698 2595525 - 2595537 + G 78 -6.2 -4.73614 | GTCATGGGTTTGTAT GGCG TTTTT CGCC TTTGTTTTGGTACTG YPK_2361 2594248 - 2595672 + | amino acid permease-associated region TERM 2699 2595684 - 2595718 + T 100 -17.4 -3.59738 | opp_overlap 2595689, overlap 2595689 ATAACCACAGTGTGA TAAAACGGTGCCAGAG GTG TTCTGGTACCGTTTTA TTTCCCCCTCTAATC TERM 2700 2595689 - 2595713 + T 100 -12.9 -4.87803 | opp_overlap 2595689, overlap 2595684 CACAGTGTGATAAAA CGGTGCCAGAG GTG TTCTGGTACCG TTTTATTTCCCCCTC TERM 2701 2595713 - 2595689 - T 93 -10 -4.39426 | opp_overlap 2595689 2595684 CACAGTGTGATAAAA CGGTGCCAGA GGTGT TCTGGTACCG TTTTATTTCCCCCTC YPK_2362 2596976 - 2595798 - | kelch repeat-containing protein TERM 2702 2597292 - 2597337 + H 80 -9.9 -3.69684 | gap 1, opp_overlap 2597300 TGCTGATTAGCTTAT GGTTAATAGGTGTCATTAGCCG CGA CGACTAATGACATC-ATCAGCC TTATTCAATAAATTT TERM 2703 2597330 - 2597300 - H 100 -13.4 -3.04263 | opp_overlap 2597292 AGCTTATGGTTAATA GGTGTCATTAGCCG CGA CGACTAATGACATC ATCAGCCTTATTCAA YPK_2363 2597370 - 2597969 + | flavoprotein WrbA TERM 2704 2598048 - 2598026 - T 91 -7.7 -4.8667 | opp_overlap 2598024 2598022 2598026 TAGACGTCATAAAAA GCACCGC GCGATGATG GCGGTGC TGTATTTTAAGCTTC YPK_2364 2599359 - 2598055 - | Dyp-type peroxidase family protein TERM 2705 2598541 - 2598556 + g 78 -9 -4.00042 | TCCCCCTACCGCCCA TGCAGG CTCG CCTGCA TTATTTGATACCCAG TERM 2706 2599326 - 2599346 + g 100 -12.5 -4.63586 | overlap 2599316 2599327 CATCATCCGGTTGAT ACGGCCCGA ATT TCGGGCCGG TTTTGTCTCTCATGT TERM 2707 2599327 - 2599345 + g 100 -16 -3.37067 | overlap 2599316 2599326 ATCATCCGGTTGATA CGGCCCGA ATT TCGGGCCG GTTTTGTCTCTCATG YPK_2365 2600500 - 2599370 - | hypothetical protein TERM 2708 2600010 - 2600032 + g 76 -8.4 -4.08485 | AGTGCCAGATCCCCA GCCTTCACTG CAT CGGTGAACGC TTTGGTTTGGCTGAC YPK_2366 2601378 - 2600530 - | iron permease FTR1 TERM 2709 2601689 - 2601660 - R 73 -8.6 -3.59698 | opp_overlap 2601662 2601664, overlap 2601662 TGATTTTACATACAA GATAGCCCCCTG TTATGG CAGGAGGCTATG TGTAGTTAAACGTAT TERM 2710 2601687 - 2601662 - R 81 -11.2 -3.37466 | opp_overlap 2601662 2601664, overlap 2601660 ATTTTACATACAAGA TAGCCCCCTG TTATGG CAGGAGGCTA TGTGTAGTTAAACGT TERM 2711 2601662 - 2601687 + r 73 -9.7 -3.00476 | opp_overlap 2601662 2601660, overlap 2601664 ATTTTACATACAAGA TAGCCCCCTGT TATG GCAGGAGGCTA TGTGTAGTTAAACGT YPK_2367 2603213 - 2601729 - | sodium/proline symporter TERM 2712 2601832 - 2601818 - G 74 -4.2 -4.91109 | overlap 2601820 GGCTGACGACAAAAA TAGCCA AAC TGGCAA ACAAGAAGCCTGGAA YPK_2368 2603440 - 2603243 - | hypothetical protein TERM 2713 2604217 - 2604206 - g 76 -2.2 -5.26875 | gap 1, overlap 2604207 TGCGTAATCAAAAAA GTGCC CAT GGC-C GCGCGGGCATGGTAC TERM 2714 2606011 - 2606034 + G 73 -9.6 -3.28745 | opp_overlap 2605992, overlap 2606014 AGTAATGCCATCGCC GAAGTCCGTG AAGC CGTGGACTTC TTGCATTATTACGCC YPK_2369 2603785 - 2607756 + | delta-1-pyrroline-5-carboxylate dehydrogenase TERM 2715 2607842 - 2607829 - T 74 -9.5 -3.39895 | opp_overlap 2607829 CGGTTTATCAATTAA GGCCC TTCG GGGCC TTTTGCCAACCAACA TERM 2716 2607829 - 2607842 + T 83 -9.5 -4.07568 | opp_overlap 2607829 CGGTTTATCAATTAA GGCCC TTCG GGGCC TTTTGCCAACCAACA YPK_2370 2608133 - 2608002 - | hypothetical protein YPK_2371 2608294 - 2608587 + | hypothetical protein YPK_2372 2608587 - 2608958 + | hypothetical protein TERM 2717 2608997 - 2608973 - T 100 -12.2 -3.78312 | opp_overlap 2608971 AAATTATCTAGCAAA TTGGGGACCA TACCG TGGCCCCCAA CATATTAAAAATGCC TERM 2718 2609093 - 2609079 - T 100 -10 -4.72272 | opp_overlap 2609073 TTTTGCCACCAAAAA CCACTG AAT CAGTGG TTGAGGTTATTGACA YPK_2373 2609160 - 2609059 - | hypothetical protein TERM 2719 2609172 - 2609198 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 2609161, overlap 2609167 2609173 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 2720 2609173 - 2609199 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 2609161, overlap 2609167 2609172 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPK_2374 2610011 - 2609250 - | ABC transporter related YPK_2375 2610676 - 2610014 - | polar amino acid ABC transporter, inner membrane subunit TERM 2721 2610657 - 2610638 - G 100 -12.2 -5.06816 | opp_overlap 2610637 ACCCTTCAATAAAAA TGGTGCTG AATC CAGCACCA ATTGCATACTTTCTG YPK_2376 2611476 - 2610676 - | extracellular solute-binding protein YPK_2377 2612619 - 2611600 - | D-cysteine desulfhydrase family protein YPK_2378 2613390 - 2612881 - | integrase domain-containing protein TERM 2722 2613352 - 2613367 + g 73 -2.4 -5.09225 | opp_overlap 2613353, overlap 2613353 ATAATCTTTTAAATA ACGGCT CAGC GGCCGC TTTTTTAACTGGAGT YPK_2379 2613542 - 2613390 - | hypothetical protein YPK_2380 2614347 - 2613625 - | RNA polymerase, sigma 28 subunit, FliA/WhiG TERM 2723 2614519 - 2614529 + r 81 -5.4 -5.10064 | CCTTGAAGCGCATTC TCAG CGT CTGA TTTTTATCTGTTCCC TERM 2724 2614665 - 2614650 - R 91 -8.2 -4.69027 | overlap 2614640 AAACTGAGGTAAAAA CCCCGC CGGA GCAGGG TTGGAATAAGGGTAT YPK_2381 2615803 - 2614694 - | flagellin domain-containing protein YPK_2382 2616100 - 2617500 + | flagellar hook-associated 2 domain-containing protein TERM 2725 2617611 - 2617625 + G 81 -12.8 -2.71144 | opp_overlap 2617620, overlap 2617611 TGATGCTGTTCGATG GGGCGC AAA GCGCCC TGATTCGCGCACGTA YPK_2383 2617511 - 2617909 + | flagellar protein FliS YPK_2384 2617920 - 2618282 + | flagellar export chaperone TERM 2726 2618491 - 2618504 + F 82 -3.1 -5.46657 | TTATAGTCGAAGTGG CTTGC TATG GTAAG TTTTTTATTAAAATA YPK_2385 2618583 - 2619458 + | AraC family transcriptional regulator TERM 2727 2619624 - 2619635 + F 70 -5.8 -4.40561 | opp_overlap 2619633 CTTTTAGATATTTTG CGCT TTAA AGCG TTCTTTTTAAGGCCG TERM 2728 2620158 - 2620170 + G 100 -4.7 -5.80817 | overlap 2620159 CCGTATACAGCGCTT ACCCC AAT GGGGA TTTTTTTATGTTGCG TERM 2729 2620159 - 2620169 + G 76 -8.2 -4.06863 | overlap 2620158 CGTATACAGCGCTTA CCCC AAT GGGG ATTTTTTTATGTTGC TERM 2730 2620548 - 2620537 - g 70 -2.2 -4.90778 | opp_overlap 2620542, overlap 2620538 2620541 TTTAGCTAAACAAAA CCTA CCAC CAGG CAGCCAGGCGATTAT TERM 2731 2621686 - 2621673 - g 93 -6.7 -5.38549 | CTGAAATAACAAAAA TGCTC GCCA GAGCA GCGATGGAGAGTAAA YPK_2386 2619812 - 2622766 + | metal dependent phosphohydrolase YPK_2387 2622927 - 2623538 + | HhH-GPD family protein TERM 2732 2623704 - 2623689 - T 80 -6.1 -4.8066 | opp_overlap 2623689 AAGATAACGCAAAAA CCCAC AGCTAA GTGGG TTGATATCTCATACG YPK_2388 2624200 - 2623724 - | death-on-curing family protein TERM 2733 2624005 - 2623991 - G 70 -10 -3.14931 | opp_overlap 2624004, overlap 2624004 GTGATTCTGGATTAA GCTCTC GAT GAGAGC AGCAGACAGTTCGAA YPK_2389 2624390 - 2624211 - | hypothetical protein YPK_2390 2625137 - 2624826 - | flagellar hook-basal body complex subunit FliE TERM 2734 2625043 - 2625061 + g 73 -4.5 -4.72272 | gap 1, overlap 2625040 2625043 AGTTCACTGGCGAAG CCC-GCCT CTGC GGGCAGGG TTTTTGCTGACCCCG TERM 2735 2625626 - 2625644 + G 78 -11 -3.3573 | overlap 2625615 TTGTCGCCTTGATGC TCTGGGCT AAA AGCCCGGA TTATCGCGTCCTTTA YPK_2391 2625490 - 2627202 + | flagellar M-ring protein FliF YPK_2392 2627199 - 2628191 + | flagellar motor switch protein FliG YPK_2393 2628184 - 2628900 + | flagellar assembly protein FliH YPK_2394 2628900 - 2630318 + | FliI/YscN family ATPase YPK_2395 2630394 - 2630840 + | flagellar export protein FliJ YPK_2396 2630837 - 2632189 + | flagellar hook-length control protein YPK_2397 2632214 - 2632336 + | hypothetical protein YPK_2398 2632456 - 2632926 + | flagellar basal body-associated protein FliL TERM 2736 2633263 - 2633253 - g 77 -8.2 -4.18018 | opp_overlap 2633259 CTGGTGCATCTAAAA CCGC TAC GCGG TACTGCGCTATTCGT YPK_2399 2632932 - 2633933 + | flagellar motor switch protein FliM TERM 2737 2634042 - 2634023 - g 75 -3.4 -5.1485 | overlap 2634027 CAAGCAACAGAAAAA CCCACGGC CACA ACCGAAGG CGTCTTTAAATCGCT YPK_2400 2633930 - 2634346 + | flagellar motor switch protein FliN TERM 2738 2634503 - 2634529 + G 81 -12.2 -3.02144 | opp_overlap 2634498 2634497 CGCAATCAAGCGCCG CCCCCCCGGC CATGCCT GCAGGGGGGG TGTTAACGCAGGTGG YPK_2401 2634346 - 2634882 + | flagellar biosynthesis protein FliO TERM 2739 2635678 - 2635690 + G 73 -3.3 -4.89339 | AATTGTTACTGGGTT CACTG GCA CAGAG TTTTTATAGCTGATT YPK_2402 2634879 - 2635703 + | flagellar biosynthetic protein FliP YPK_2403 2635809 - 2636078 + | flagellar biosynthetic protein FliQ TERM 2740 2636795 - 2636818 + G 79 -10.4 -3.61715 | opp_overlap 2636804 CCATTGTTAGCCCCT TTCACCGAAC ACCT GTTTGGTGAA TTCTTCGACCGCCTG YPK_2404 2636081 - 2636863 + | flagellar biosynthetic protein FliR TERM 2741 2637224 - 2637206 - g 77 -3 -5.25656 | overlap 2637198 AAAATCAGCAAAAAA TCGCACCC CGG AAGAGCGA TTTCAACTACTTGTT YPK_2405 2637159 - 2637326 + | hypothetical protein TERM 2742 2637787 - 2637805 + G 74 -3 -5.02074 | opp_overlap 2637787, overlap 2637788 AAGAAGGAAAACCAT TCGACTCT GTT AGAGCCGC TTTTTTAGAAGGTAA YPK_2406 2637336 - 2637935 + | hypothetical protein YPK_2407 2638960 - 2638001 - | ribokinase-like domain-containing protein TERM 2743 2638313 - 2638297 - G 73 -7.9 -4.11216 | CCCCCATTTTGAAAA CGGTGTG GCC CACCCCG CGGTTCAGGAAAAAC YPK_2408 2640031 - 2639009 - | monosaccharide-transporting ATPase YPK_2409 2641611 - 2640034 - | ABC transporter related YPK_2410 2642672 - 2641677 - | putative sugar-binding periplasmic protein TERM 2744 2641803 - 2641817 + g 85 -5.6 -5.24129 | CACCCCCAGATTCAT CCCATC AGT GAGGGG TTTTTTATCGAGCAG TERM 2745 2641861 - 2641835 - G 93 -14.4 -3.4252 | opp_overlap 2641832 2641831 2641829 TTTTATCGAGCAGAA GCTTGGCGACGG TAT CCATCGCCAGGC TGGCATCTTTAGGAT YPK_2411 2643794 - 2642715 - | monosaccharide-transporting ATPase YPK_2412 2643946 - 2643791 - | hypothetical protein YPK_2413 2645990 - 2643924 - | short-chain dehydrogenase/reductase SDR YPK_2414 2646208 - 2647209 + | DeoR family transcriptional regulator YPK_2415 2648218 - 2647238 - | flagellar hook-associated protein 3 TERM 2746 2647588 - 2647598 + g 83 -4 -5.40072 | GTACCGTATCAATGG TATC AAA GATA TTTTTTTCCGCAGCA YPK_2416 2650021 - 2648357 - | flagellar hook-associated protein FlgK TERM 2747 2648598 - 2648583 - G 71 -8.2 -3.76402 | opp_overlap 2648593 ACGTTACTGACTAAA CCGGCG TAAG CACCGG ACAAGGTGGTTTTAC TERM 2748 2649564 - 2649581 + g 73 -9.9 -3.38178 | CCGTCATCCATATCC CGCAGAT ATTT ATCTGCG TTCTGGAATTGGTTC YPK_2417 2651264 - 2650320 - | flagellar rod assembly protein/muramidase FlgJ YPK_2418 2652373 - 2651264 - | flagellar P-ring protein YPK_2419 2653077 - 2652388 - | flagellar L-ring protein TERM 2749 2653184 - 2653218 + r 72 -9.8 -2.74144 | overlap 2653183 ATACCTATTATGCTG CGGCGATCAGGGGGCA TGA TGCCCCCCGAAAGCAG GTTTACAGCTGAGCC YPK_2420 2654003 - 2653221 - | flagellar basal-body rod protein FlgG TERM 2750 2653639 - 2653623 - G 70 -9.5 -3.18264 | GCCTGCAGTGACTAA TTGACCA TTC TGGTCAA CCTGGAAAGAGCCAT YPK_2421 2654784 - 2654029 - | flagellar basal-body rod protein FlgF YPK_2422 2656092 - 2654806 - | flagellar basal body FlaE domain-containing protein TERM 2751 2655875 - 2655851 - G 80 -4.9 -5.1287 | overlap 2655852 2655853 TGCATACGGAAAAAA CCGTTCTGGCT GAT AGCCAGATCCA AACGACGATTAGTGG YPK_2423 2656980 - 2656294 - | flagellar hook capping protein YPK_2424 2657399 - 2656995 - | flagellar basal-body rod protein FlgC TERM 2752 2657193 - 2657176 - G 70 -7.7 -3.88498 | overlap 2657177 GGCTGATACACCAAA CGATCCG GTGA CGGATCA TCAACTATCTGAGCA YPK_2425 2657818 - 2657405 - | flagellar basal-body rod protein FlgB YPK_2426 2657991 - 2658800 + | flagella basal body P-ring formation protein FlgA YPK_2427 2658951 - 2659253 + | anti-sigma-28 factor, FlgM YPK_2428 2659272 - 2659712 + | FlgN family protein TERM 2753 2659783 - 2659753 - T 100 -17.7 -5.40474 | opp_overlap 2659753 2659756 ATCCTTTTAAAAAAA CAACGCCGCTCAA TTAAC CTGAGCGGCGTTG TTCTCTGGACGTTTG TERM 2754 2659753 - 2659783 + T 100 -17 -3.51161 | opp_overlap 2659753, overlap 2659756 ATCCTTTTAAAAAAA CAACGCCGCTCA ATTAACC TGAGCGGCGTTG TTCTCTGGACGTTTG TERM 2755 2659756 - 2659780 + T 100 -12.9 -3.885 | opp_overlap 2659753, overlap 2659753 CTTTTAAAAAAACAA CGCCGCTCA ATTAACC TGAGCGGCG TTGTTCTCTGGACGT YPK_2429 2662801 - 2659892 - | invasin region 3 YPK_2430 2663880 - 2663458 - | flagellar FlhE family protein YPK_2431 2665958 - 2663880 - | flagellar biosynthesis protein FlhA TERM 2756 2665397 - 2665409 + g 74 -2.6 -5.17576 | CAGCCTCTTGCGTAA CGTC AGAGC GGCG TTTTTTCGCTTCATC TERM 2757 2665680 - 2665692 + g 74 -9.1 -3.78775 | opp_overlap 2665679 2665676 CATCAGAATAATACG CGTGG AAG CCACG TTTAGTGATAGACGC YPK_2432 2667118 - 2665958 - | flagellar biosynthetic protein FlhB TERM 2758 2666361 - 2666374 + g 70 -9.5 -3.21218 | ACCATCATCCGACGA CGGGC CATC GCCCG TTGCTGCTGACGAAT YPK_2433 2667650 - 2668114 + | hypothetical protein TERM 2759 2668146 - 2668166 + G 79 -11.9 -3.25204 | overlap 2668149 TATTTATGAACTTGT TAGGCGCCA TGA TGGCGCTTA TCTGTTTAAGAGTAA TERM 2760 2668149 - 2668163 + G 85 -11.4 -3.76232 | overlap 2668146 TTATGAACTTGTTAG GCGCCA TGA TGGCGC TTATCTGTTTAAGAG YPK_2434 2668108 - 2668434 + | hypothetical protein TERM 2761 2668441 - 2668458 + T 75 -8.4 -3.89336 | opp_overlap 2668440 TATGACTGAAATAGG CTGGGC TTAATT GCCCAG TTTCGCTTTGGTTAA TERM 2762 2668571 - 2668554 - T 70 -5.5 -4.57073 | CAGTTCGCCCAAAAA CGGCTTG GCCA CAAGTCG ATGAAAATGACTCAT TERM 2763 2668728 - 2668701 - T 100 -7.8 -5.77856 | AATAAATTAAAAAAA GACCGAATACGA TTCC TGATATTCGGTC TAGGGAAATGGCTCT YPK_2435 2669298 - 2668957 - | hypothetical protein YPK_2436 2670279 - 2669395 - | copper resistance D domain-containing protein TERM 2764 2670230 - 2670204 - G 81 -12.4 -3.03903 | overlap 2670206 AAAAGGCGGTGAATA CAGTGATGCCAA ACA TCAGCATCACTG CCATAAAGTGCAGAA YPK_2437 2670668 - 2670282 - | copper resistance protein CopC TERM 2765 2670975 - 2670963 - R 75 -3.3 -5.18715 | overlap 2670964 AGAAAAACAAGAAAA GGCGA GGA TCGCG GGGAGGGATAGGCAA TERM 2766 2671026 - 2670998 - R 82 -8.1 -4.47456 | ATAGGCAACAACAAA GCCGCCGTACC CAATAAT AGTACCGCGGC GAATATTTTCTCAAT YPK_2438 2671556 - 2671047 - | ferroxidase TERM 2767 2671403 - 2671422 + g 70 -2.2 -5.00616 | gap 1, opp_overlap 2671420, overlap 2671407 AACGTTCCATATGTT GCATTTCTT CTT GAGA-ATGC TTTTTTAAAAAGGCA YPK_2439 2671957 - 2672187 + | DNA polymerase II beta subunit YPK_2440 2673197 - 2672247 - | proline iminopeptidase YPK_2441 2673519 - 2673632 + | hypothetical protein TERM 2768 2673658 - 2673675 + T 100 -9.8 -5.66229 | opp_overlap 2673658 CGTCTCGTGAGTTAA CCCGCC ATTATC GGCGGG TTTTTTATTGTTCAT TERM 2769 2673675 - 2673658 - T 76 -10.5 -3.05384 | opp_overlap 2673658 CGTCTCGTGAGTTAA CCCGCCA TTAT CGGCGGG TTTTTTATTGTTCAT YPK_2442 2675970 - 2673919 - | oligopeptidase B TERM 2770 2676207 - 2676187 - R 72 -9.7 -2.83112 | opp_overlap 2676201 ATTGAATTGACCAGA TGGAGGGCA ATA TGCCCTCAA ACATAGCGGGTTATT YPK_2443 2676705 - 2676280 - | hypothetical protein YPK_2444 2677105 - 2676797 - | hypothetical protein YPK_2445 2677465 - 2677145 - | YebG family protein YPK_2446 2678941 - 2677559 - | DEAD/DEAH box helicase domain-containing protein TERM 2771 2680295 - 2680255 - g 73 -9.8 -3.37975 | gap 1, overlap 2680245 ACTGACCAGCCAGAA TATCACCTATCGTGGGCTG GAAA CTGCCCT-GATAGGCGATA CACAGATTCGGTTAT YPK_2447 2679254 - 2680435 + | phosphoribosylglycinamide formyltransferase 2 TERM 2772 2680471 - 2680498 + T 89 -7.1 -5.04597 | opp_overlap 2680471 2680475 ACGCTAGCAAATAAA TAAACCCGC CATTCAGCCA GCGGGTTTA TTTTTATCTATCAAT TERM 2773 2680498 - 2680471 - T 87 -8.5 -4.49958 | opp_overlap 2680471, overlap 2680475 ACGCTAGCAAATAAA TAAACCCGCCA TTCAGC CAGCGGGTTTA TTTTTATCTATCAAT TERM 2774 2680494 - 2680475 - T 74 -4.9 -4.80736 | opp_overlap 2680471, overlap 2680471 TAGCAAATAAATAAA CCCGCCA TTCAGC CAGCGGG TTTATTTTTATCTAT YPK_2448 2680818 - 2680561 - | hypothetical protein YPK_2449 2680983 - 2682359 + | para-aminobenzoate synthase, subunit I YPK_2450 2682356 - 2682955 + | NUDIX hydrolase TERM 2775 2682979 - 2682964 - f 100 -11.8 -3.92373 | opp_overlap 2682964 TATTTGACTCATAAA GCCGCC ATTT GGCGGC TGTTAACCTGTGACA TERM 2776 2682964 - 2682979 + F 86 -11.8 -3.07962 | opp_overlap 2682964 TATTTGACTCATAAA GCCGCC ATTT GGCGGC TGTTAACCTGTGACA TERM 2777 2683386 - 2683366 - f 70 -7.5 -3.79993 | TTAGAGACCAAAATA TACCGGGCC ATT GACCCCGTA GCTGAATAACTAGAA TERM 2778 2684116 - 2684128 + G 73 -5.5 -4.56607 | opp_overlap 2684114, overlap 2684114 GCAAAACATACTACT CCATC GGC GGTGG TTTTATCGTTGATGA YPK_2451 2683683 - 2685047 + | L-serine dehydratase 1 TERM 2779 2685029 - 2685047 + T 78 -2.4 -5.47218 | overlap 2685033 TGGTGGCCTGGCGAT TAAAGTGC AGT GTACTTGA TTTTTTTCGCTGACA TERM 2780 2685198 - 2685216 + T 100 -8.8 -4.82901 | opp_overlap 2685186 AAAGGATGGCGCGGC TAGCCCCC AGG GAGGGCTA TTTTTATGCAGGGAA TERM 2781 2685325 - 2685286 - T 100 -21 -3.62046 | opp_overlap 2685286 GCACGTTGTCAACAA CCTCTAATGCCCGTCA GTTAAATA TGACGGGCATTAGAGG TTTACACCATCACCG TERM 2782 2685286 - 2685325 + T 100 -21 -3.55444 | opp_overlap 2685286 GCACGTTGTCAACAA CCTCTAATGCCCGTCA GTTAAATA TGACGGGCATTAGAGG TTTACACCATCACCG YPK_2452 2685824 - 2685327 - | 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit YPK_2453 2687407 - 2685845 - | 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit YPK_2454 2688842 - 2687475 - | 4-hydroxyphenylacetate transporter TERM 2783 2688774 - 2688789 + g 75 -3.2 -5.06414 | GACGGACTGCTGCTG CGCACT TAAT GGTGTG TTTTTATTGACCGGC YPK_2455 2689674 - 2688868 - | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase TERM 2784 2689609 - 2689626 + g 90 -2.7 -5.72207 | GCTACACAAACCTAG CCATAAG CCAA TTTGTGG TTTTTTTGCTTTCAG YPK_2456 2690488 - 2689685 - | 2-oxo-hepta-3-ene-1,7-dioic acid hydratase TERM 2785 2689875 - 2689887 + g 73 -10.5 -3.10344 | opp_overlap 2689868 TGATTCAATACCGCC GCGGC AAC GCCGC TCTCTTCAATCACGC YPK_2457 2690880 - 2690482 - | 5-carboxymethyl-2-hydroxymuconate isomerase YPK_2458 2691762 - 2690905 - | 3,4-dihydroxyphenylacetate 2,3-dioxygenase YPK_2459 2693347 - 2691881 - | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase TERM 2786 2692516 - 2692498 - G 73 -2.3 -5.06414 | TCTCTTGAATAAAAA TGCGCGA ACCCG CCGTGCA ACGTTCACCATTGAG YPK_2460 2694108 - 2693344 - | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit YPK_2461 2694737 - 2694105 - | 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit TERM 2787 2695149 - 2695159 + G 85 -4.6 -5.42862 | TTGCAGGCTCGTGAA GCCG CTA TGGC TTTTTTTCGGCCTAT YPK_2462 2695107 - 2695574 + | MarR family transcriptional regulator TERM 2788 2695662 - 2695635 - T 100 -17 -3.62046 | opp_overlap 2695629 GTACGTTGTCAATAA CCTCAGGGGAGC CGAA GCGCCCCTGAGG TTCCACTCTCTGCTT YPK_2463 2697220 - 2695676 - | integral membrane protein TerC TERM 2789 2696975 - 2696961 - G 71 -6.4 -4.24384 | overlap 2696956 ACCAGCAAAATCAAA TCTCGC CCA GCGAAA TTAAACGCACCGACG YPK_2464 2697931 - 2698905 + | PTS system mannose/fructose/sorbose family IIB subunit YPK_2465 2698997 - 2699794 + | PTS system mannose/fructose/sorbose family IIC subunit TERM 2790 2700169 - 2700202 + G 73 -9.5 -3.33162 | overlap 2700177 CATTAAAGTGGGTCT GATGGGGCCACTGGC CGGT GTCGGTGACCCGATC TTCTGGGGTACCGTA YPK_2466 2699810 - 2700688 + | PTS system mannose/fructose/sorbose family IID subunit TERM 2791 2700711 - 2700734 + F 100 -8.8 -4.89567 | opp_overlap 2700714, overlap 2700714 GATTATCTTCATCCA AAACCGGGGG CTTG CTCCCGGTTA TTTTATCTTTTAGAC TERM 2792 2700714 - 2700731 + F 100 -10.5 -4.52747 | opp_overlap 2700714, overlap 2700711 TATCTTCATCCAAAA CCGGGGG CTTG CTCCCGG TTATTTTATCTTTTA TERM 2793 2700731 - 2700714 - f 79 -8.3 -4.18494 | opp_overlap 2700714 2700711 TATCTTCATCCAAAA CCGGGGG CTTG CTCCCGG TTATTTTATCTTTTA YPK_2467 2700888 - 2701349 + | hypothetical protein TERM 2794 2702081 - 2702070 - g 76 -2.2 -5.24449 | CAGAAACGGAAAAAA TGCG CAGT CACA GTTTTTGGGTGTTGG YPK_2468 2701775 - 2702344 + | hypothetical protein TERM 2795 2702437 - 2702399 - T 100 -24.8 -3.00946 | opp_overlap 2702403, overlap 2702403 CTGCGCGATAAATGA GAAATCCCCCGGCGATAT ATC AAATCGCCGGGGGATTTC AGTAAAGCACCTGTT TERM 2796 2702403 - 2702433 + T 100 -19.8 -3.64703 | opp_overlap 2702399 2702403 GCGATAAATGAGAAA TCCCCCGGCGATAT ATC AAATCGCCGGGGGA TTTCAGTAAAGCACC TERM 2797 2702433 - 2702403 - T 100 -19.8 -4.17701 | opp_overlap 2702403, overlap 2702399 GCGATAAATGAGAAA TCCCCCGGCGATAT ATC AAATCGCCGGGGGA TTTCAGTAAAGCACC YPK_2469 2704811 - 2702505 - | TonB-dependent siderophore receptor TERM 2798 2702847 - 2702857 + g 74 -6.8 -4.33165 | GTTACCGTTGTTCGT CCCA TTT TGGG TTTTAGTCAGTTTAG TERM 2799 2704357 - 2704383 + g 72 -5.8 -4.36914 | overlap 2704358 2704380 2704382 CGAATACGGTAATTC TGTGATGGGTTA CCA TAACCCCGCACG TTTTGTACCGAAGCG TERM 2800 2704749 - 2704771 + g 86 -12 -3.51934 | opp_overlap 2704747 2704745 2704750, overlap 2704747 2704750 GACGCACAAAAGACG AGGAGCCGAA CGT TTCGGCTCCG TATTTATGGAGAGAG TERM 2801 2704770 - 2704750 - G 100 -15.5 -2.98789 | opp_overlap 2704750 2704749 2704747, overlap 2704747 2704745 ACGCACAAAAGACGA GGAGCCGAA CGT TTCGGCTCC GTATTTATGGAGAGA TERM 2802 2704750 - 2704770 + g 95 -15.5 -2.70946 | opp_overlap 2704747 2704745 2704750, overlap 2704749 2704747 ACGCACAAAAGACGA GGAGCCGAA CGT TTCGGCTCC GTATTTATGGAGAGA TERM 2803 2706328 - 2706310 - g 71 -6.6 -4.22214 | AGTGAGCGAAAACAA CGCGAAGA TGC CCTGCGCG CCAGTGAAGCTGCCC YPK_2470 2705155 - 2707236 + | diguanylate cyclase with PAS/PAC sensor TERM 2804 2707241 - 2707272 + F 100 -9.5 -4.98255 | overlap 2707243 TCACCTCTTGAGGTA TATTGCGGGTGGC TATCAT GTCACCTGCAATG TTTTTATGATTGGCC TERM 2805 2707243 - 2707270 + F 88 -9.9 -4.11322 | overlap 2707241 ACCTCTTGAGGTATA TTGCGGGTGGC TATCAT GTCACCTGCAA TGTTTTTATGATTGG YPK_2471 2707458 - 2707736 + | hypothetical protein YPK_2472 2708797 - 2707958 - | rRNA (guanine-N(1)-)-methyltransferase TERM 2806 2708840 - 2708826 - H 76 -7.8 -4.22858 | overlap 2708823 ATAACAGATAAATAA CCGCCA AGA TAGCGG GCAGATGCGGCGTTA YPK_2473 2709171 - 2709944 + | hypothetical protein TERM 2807 2710023 - 2709992 - T 86 -11.7 -3.34398 | opp_overlap 2710000 2710021, overlap 2710000 GGGTTTCCCCAAATA TGAAAAAACCCGC ACAAAG GCGGGTTTTTACA GCAAACGCTGATTAG TERM 2808 2710015 - 2710000 - T 91 -7.5 -5.32699 | opp_overlap 2710000, overlap 2709992 CCAAATATGAAAAAA CCCGC ACAAAG GCGGG TTTTTACAGCAAACG TERM 2809 2710000 - 2710015 + T 78 -7.5 -4.56597 | opp_overlap 2709992 2710000 CCAAATATGAAAAAA CCCGC ACAAAG GCGGG TTTTTACAGCAAACG YPK_2474 2710244 - 2710035 - | cold-shock DNA-binding domain-containing protein YPK_2475 2710403 - 2710287 - | hypothetical protein TERM 2810 2710594 - 2710608 + H 93 -10 -4.28049 | TATACTGTCTCATCC CCCAGT TTT ACTGGG TTTTAACATTTTAGC YPK_2476 2711405 - 2712013 + | anti peptide resistance and lipid A acylation PagP TERM 2811 2712075 - 2712039 - T 89 -6.8 -5.28481 | opp_overlap 2712041, overlap 2712041 TATTTAACTAAAAAA CAGCATATAACCAT AATATTAAA ATGGTTATATGCTT GGTTGAGGGCGAATT TERM 2812 2712041 - 2712073 + T 74 -9.4 -3.33696 | opp_overlap 2712039 2712041 TTTAACTAAAAAACA GCATATAACCAT AATATTAAA ATGGTTATATGC TTGGTTGAGGGCGAA TERM 2813 2712073 - 2712041 - T 88 -9.4 -4.26777 | opp_overlap 2712041, overlap 2712039 TTTAACTAAAAAACA GCATATAACCAT AATATTAAA ATGGTTATATGC TTGGTTGAGGGCGAA YPK_2477 2713682 - 2712309 - | amino acid permease-associated region YPK_2478 2714164 - 2713919 - | hypothetical protein YPK_2479 2714572 - 2714273 - | hypothetical protein TERM 2814 2714823 - 2714794 - R 95 -12.9 -3.10071 | opp_overlap 2714792 2714787, overlap 2714784 AAATTGCAGGTAACA TGCTGACACTGCC TGTT GGTAGTGCCAGCA TCGGGACACGTTTAT YPK_2480 2715110 - 2714835 - | hypothetical protein YPK_2481 2715693 - 2715926 + | hypothetical protein YPK_2482 2716256 - 2716017 - | hypothetical protein YPK_2483 2716580 - 2716467 - | hypothetical protein TERM 2815 2716542 - 2716532 - G 87 -5.4 -5.42259 | GCATCTTTAAAAAAA TGGT TAC ACCA ACAACCGCTATCAGA TERM 2816 2716704 - 2716678 - H 71 -6.6 -4.14243 | opp_overlap 2716678 TATGGCACTTGAAAA CTCTTTTGCCAA ACC TCGGCCAAAAAG TCTTTACCGCACATT TERM 2817 2716880 - 2716866 - g 71 -9.2 -3.56594 | opp_overlap 2716866, overlap 2716856 GTAAATGGGTCGAAA CCCACC TAG GGCGGG TCATCTATCTTGAAG YPK_2484 2716811 - 2717197 + | AraC family transcriptional regulator YPK_2485 2717443 - 2717279 - | hypothetical protein YPK_2486 2717634 - 2717470 - | hypothetical protein YPK_2487 2718099 - 2719817 + | ABC transporter related YPK_2488 2719920 - 2720771 + | protein of unknown function RIO1 TERM 2818 2720838 - 2720824 - f 75 -5.6 -4.71318 | AAGATCAAAAAACAA CCTCTG GAG CAGCGG CCTTCCCTGCTCCTC YPK_2489 2721008 - 2721292 + | YCII-related TERM 2819 2721338 - 2721319 - f 76 -9.3 -3.49858 | opp_overlap 2721313, overlap 2721311 TCAAGCACACCATAA GCCATGG TGAATG CCATGGC TGCTGATAAGTTCAG TERM 2820 2721733 - 2721712 - g 75 -5.8 -4.62772 | overlap 2721713 TGGAAAGCAAATAAA CCGCAAGC GGAGAT GCTTGCGC AATGGCATGAGGCAC YPK_2490 2721682 - 2722494 + | hypothetical protein TERM 2821 2722787 - 2722754 - T 71 -9.7 -2.66748 | opp_overlap 2722759, overlap 2722759 GAGGAGCCAAATTTA GAAAATCCCGTTTAG GAAA CTAAGCGGGATTTTT GCTTTTCTATCACTG TERM 2822 2722782 - 2722759 - T 95 -9.6 -4.51196 | opp_overlap 2722759, overlap 2722754 GCCAAATTTAGAAAA TCCCGTTTAG GAAA CTAAGCGGGA TTTTTGCTTTTCTAT TERM 2823 2722759 - 2722782 + T 100 -11.8 -5.15526 | opp_overlap 2722759 2722754 GCCAAATTTAGAAAA TCCCGTTTAG GAAA CTAAGCGGGA TTTTTGCTTTTCTAT YPK_2491 2723916 - 2722900 - | LacI family transcription regulator TERM 2824 2723252 - 2723262 + g 71 -4.6 -4.59773 | TAACCGCCAGGACGA GTGG GAT CCGC TTTTTGCAGATACCC TERM 2825 2723705 - 2723689 - G 75 -5.9 -4.60487 | TATCATTTCCAAAAA TGTCGAA TTA TTCAACA CTCGTGGACGTGATG TERM 2826 2724128 - 2724092 - H 89 -12.6 -2.87881 | gap 1, opp_overlap 2724092 2724108, overlap 2724099 2724113 TAAGTTCGTCACACA TCCGAAACGTTT-AGAT TTAA ATCCGAAACGTTTCGGA TCTACTCTAATGCCG TERM 2827 2724092 - 2724128 + H 75 -10.4 -2.87468 | gap 1, opp_overlap 2724092 2724099 2724113, overlap 2724108 TAAGTTCGTCACACA TCCGAAACGTTTAG-AT TTAA ATCCGAAACGTTTCGGA TCTACTCTAATGCCG TERM 2828 2724128 - 2724113 - H 70 -7.6 -3.7108 | opp_overlap 2724092 2724108, overlap 2724099 2724092 ACGTTTAGATTTAAA TCCGAA ACGT TTCGGA TCTACTCTAATGCCG YPK_2492 2724271 - 2725578 + | major facilitator superfamily oligosaccharide/H+ symporter YPK_2493 2725656 - 2727782 + | glycoside hydrolase clan GH-D TERM 2829 2727788 - 2727807 + F 95 -12.8 -2.94322 | opp_overlap 2727784, overlap 2727785 CGTAAATTAACCTCA GGCCGCCG TTTA TGGCGGCC TACTTTGCGTCCAAT YPK_2494 2727799 - 2727963 + | hypothetical protein YPK_2495 2728969 - 2728229 - | 4'-phosphopantetheinyl transferase YPK_2496 2729478 - 2730470 + | TRAP dicarboxylate transporter, DctP subunit TERM 2830 2730481 - 2730507 + F 75 -10.3 -2.73875 | overlap 2730478 AATAACATCCATCCG GCGGTATTGAA TTATT TTTAATACCGC TGATATTACCCAACG TERM 2831 2730761 - 2730773 + G 75 -7.7 -4.15044 | CGCTATTTTATGTAT GGTGA CGT TCACC TTTATTGGCGCAGCG YPK_2497 2730594 - 2731100 + | tripartite ATP-independent periplasmic transporter DctQ YPK_2498 2731120 - 2732412 + | TRAP dicarboxylate transporter, DctM subunit YPK_2499 2732670 - 2733299 + | two component LuxR family transcriptional regulator TERM 2832 2733351 - 2733409 + T 100 -16.3 -2.81072 | opp_overlap 2733350 2733353 2733366, overlap 2733353 2733366 TGAAGTCGGGCAAAC CATTTGCGGCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGGC-GCTGAGG ATTCTGTTACCTCGC TERM 2833 2733407 - 2733353 - T 95 -13.1 -2.90992 | opp_overlap 2733351 2733353 2733366, overlap 2733350 2733366 AAGTCGGGCAAACCA TTTGCGGCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGG-CGCTGA GGATTCTGTTACCTC TERM 2834 2733353 - 2733410 + T 82 -10.2 -3.68988 | gap 3, opp_overlap 2733353 2733350 2733366, overlap 2733351 2733366 AAGTCGGGCAAACCA TTTGC-G-GCCTAAATACCG-CTTGCCGA TAG TTGGCAAGACGGTATTTAGGCGCTGAGGA TTCTGTTACCTCGCC TERM 2835 2733395 - 2733366 - T 78 -10.1 -3.53224 | gap 1, opp_overlap 2733351 2733353 2733366, overlap 2733353 2733350 CATTTGCGGCCTAAA TACCG-CTTGCCGA TAG TTGGCAAGACGGTA TTTAGGCGCTGAGGA TERM 2836 2733366 - 2733395 + T 100 -12.3 -3.55444 | gap 1, opp_overlap 2733366 2733353 2733350, overlap 2733351 2733353 CATTTGCGGCCTAAA TACCG-CTTGCCGA TAG TTGGCAAGACGGTA TTTAGGCGCTGAGGA TERM 2837 2733854 - 2733831 - T 73 -7.4 -4.15998 | opp_overlap 2733832, overlap 2733832 AGCCAAATTAAAGAA CCCTGCCTAG GTAA CTAAGCAGGT TTTTTGCATTTCAGT TERM 2838 2733832 - 2733853 + T 100 -8.7 -5.22039 | opp_overlap 2733831 2733832 GCCAAATTAAAGAAC CCTGCCTAG GTAA CTAAGCAGG TTTTTTGCATTTCAG TERM 2839 2733853 - 2733832 - T 79 -10.9 -3.08514 | opp_overlap 2733832, overlap 2733831 GCCAAATTAAAGAAC CCTGCCTAG GTAA CTAAGCAGG TTTTTTGCATTTCAG TERM 2840 2734116 - 2734080 - T 79 -6.8 -4.66537 | gap 1, opp_overlap 2734086 2734092 2734092, overlap 2734082 TGGCTGAACATAAAA TCTTA-ATGAAAAGCCC TGAG GGACTTTTCATCTATGA GTATTTGTAAAGATT YPK_2500 2734722 - 2734183 - | hypothetical protein TERM 2841 2734569 - 2734581 + g 91 -3.3 -5.83211 | TTAGCTGTTTATCAC GCTCA AGT TGTGC TTTTTTATTTTCCTC TERM 2842 2734613 - 2734632 + g 80 -5 -5.06103 | overlap 2734612 ACAGCCTCTCTTGCC TCACGAGT CTGA GTTCGTGA TTTTTTAGCCGTTCT YPK_2501 2735507 - 2734812 - | hypothetical protein TERM 2843 2735810 - 2735827 + H 82 -8.4 -4.24338 | opp_overlap 2735807 2735810 TTTGAGAGAGAACTA GCGGGT TGTATC ACCCGC TTTTAACATGTTTTT TERM 2844 2736316 - 2736306 - g 77 -8.2 -4.21141 | CCTGAACAAATGAAA GCGG TAG CCGC GGCTGGACACGAAGT YPK_2502 2736084 - 2736965 + | polysaccharide deacetylase TERM 2845 2737051 - 2737020 - g 85 -3 -5.65177 | gap 1, overlap 2737023 2737024 ACATCTATAAAAAAA TATCTGCTGATGGCT GGC AGCCG-CAGCAATTA ACAATCAAAGATGTC YPK_2503 2737001 - 2738341 + | major facilitator transporter YPK_2504 2739793 - 2738369 - | MATE efflux family protein TERM 2846 2739563 - 2739552 - G 81 -3.6 -5.47821 | ACGGAGGCAAAAAAA GCCG CAAT CAGC ATATTGAAACTGTCG YPK_2505 2740093 - 2741460 + | argininosuccinate synthase TERM 2847 2741539 - 2741568 + T 83 -10.7 -3.4678 | overlap 2741540 CTGCGCGACCCCAAG CGGTTAAGGGGAG CTTC CCCCCCTTAACCC TTCTCGTGTCACAGT TERM 2848 2741540 - 2741567 + T 95 -14.2 -2.67747 | overlap 2741539 TGCGCGACCCCAAGC GGTTAAGGGGAG CTTC CCCCCCTTAACC CTTCTCGTGTCACAG YPK_2506 2742810 - 2741665 - | FMN-dependent alpha-hydroxy acid dehydrogenase TERM 2849 2742606 - 2742594 - G 71 -9.1 -3.50853 | CTGGCCCAAGGACAA CAGGC ATT GCCTG CGTCTCGCCGAAAAG YPK_2507 2742995 - 2742855 - | hypothetical protein YPK_2508 2744384 - 2743107 - | mandelate racemase/muconate lactonizing protein YPK_2509 2745258 - 2744416 - | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YPK_2510 2746046 - 2745306 - | short-chain dehydrogenase/reductase SDR YPK_2511 2746512 - 2746934 + | putative thiol-disulphide oxidoreductase DCC YPK_2512 2748247 - 2746943 - | major facilitator transporter TERM 2850 2747292 - 2747322 + g 83 -6.8 -4.9725 | overlap 2747293 2747294 GCCGCGACAACTAGG TTCAGCGTCGCAAT CGG GTTGCGGCGATGGG TTTTTCTATCGGCAT TERM 2851 2747662 - 2747651 - G 70 -2.2 -4.92314 | ATCAAGGTAGAAAAA GGCA AAAA TACC TAACCCCACGGCGGG TERM 2852 2748721 - 2748731 + H 73 -5.4 -4.65168 | opp_overlap 2748721, overlap 2748728 TGTTTTCAGAATAAT GTCA GAT TGAC TTTTTAAAATGTCAT TERM 2853 2748728 - 2748745 + H 76 -2.7 -5.38054 | opp_overlap 2748721, overlap 2748721 AGAATAATGTCAGAT TGACTTT TTAA AATGTCA TTTTTATTTATAAAA TERM 2854 2750435 - 2750422 - g 71 -6.7 -4.21773 | CGGCAAGACAAACAA TGCCA TTAG TGGCA AATGCCACAGCACAA YPK_2513 2749287 - 2752514 + | Ig domain-containing protein TERM 2855 2752601 - 2752579 - T 100 -11.3 -5.16841 | opp_overlap 2752577 GCACACCAATAAAAA GGGCTGACA ATAGA TGCCAGCCC CACTCTCTTTCCCCT YPK_2514 2752975 - 2752658 - | hypothetical protein YPK_2515 2754518 - 2753409 - | hypothetical protein YPK_2516 2754811 - 2756241 + | exodeoxyribonuclease I TERM 2856 2758543 - 2758566 + T 86 -11.8 -3.19157 | gap 1, opp_overlap 2758543 TCTGAATACAAAAAA TCCGGCAACAG AGA CTGT-GCCGGA TTGATAAACTTAATG TERM 2857 2758566 - 2758543 - T 100 -11.8 -5.47159 | gap 1, opp_overlap 2758543 TCTGAATACAAAAAA TCCGGCAACAG AGA CTGT-GCCGGA TTGATAAACTTAATG YPK_2517 2759990 - 2758599 - | amino acid permease-associated region YPK_2518 2760195 - 2759980 - | hypothetical protein TERM 2858 2760339 - 2760314 - R 100 -7.6 -5.86332 | opp_overlap 2760314 2760317 CGAATGCAAAAAAAA TAACCGACGC GTTTAA ACGTCGGCTA TTTCATTCGGCGTAT YPK_2519 2761540 - 2760449 - | glycerol dehydrogenase YPK_2520 2761826 - 2763382 + | ABC transporter related YPK_2521 2763379 - 2764374 + | monosaccharide-transporting ATPase YPK_2522 2764445 - 2764540 + | hypothetical protein TERM 2859 2764643 - 2764617 - g 82 -10.1 -3.82218 | gap 1, opp_overlap 2764626, overlap 2764618 2764633 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 2860 2764644 - 2764618 - g 71 -10.1 -2.88849 | gap 1, opp_overlap 2764626, overlap 2764617 2764633 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_2523 2764530 - 2765066 + | hypothetical protein YPK_2524 2766048 - 2765221 - | NAD-dependent epimerase/dehydratase TERM 2861 2766580 - 2766531 - H 78 -10.1 -3.48395 | gap 1, opp_overlap 2766542, overlap 2766542 AGGTGGCGTAGAGAA CGCAGT-AGAGAGCCCTCGGAAGA TAA TCTTCCGAGGGCTTTTTTATTGCT CATCATTTTATAGAC TERM 2862 2766568 - 2766542 - H 100 -21 -2.96538 | opp_overlap 2766542, overlap 2766531 AGAACGCAGTAGAGA GCCCTCGGAAGA TAA TCTTCCGAGGGC TTTTTTATTGCTCAT TERM 2863 2766542 - 2766568 + H 100 -21 -5.52023 | opp_overlap 2766542 2766531 AGAACGCAGTAGAGA GCCCTCGGAAGA TAA TCTTCCGAGGGC TTTTTTATTGCTCAT TERM 2864 2767625 - 2767607 - g 75 -10.2 -3.33711 | opp_overlap 2767606 2767604 2767607 2767618 CATGGAGAAATTGAA GGCGCTGG GTG CCAGCTCC ATTCTGGTATTACCG YPK_2525 2766762 - 2767661 + | ATP phosphoribosyltransferase TERM 2865 2767742 - 2767728 - g 70 -2.1 -4.93316 | gap 1, overlap 2767719 GAAGAACAGCAAAAA GC-GCT GTTG AGCCGC CCGGCCATCAATGCA YPK_2526 2767665 - 2768996 + | histidinol dehydrogenase YPK_2527 2768999 - 2770147 + | histidinol-phosphate aminotransferase YPK_2528 2770144 - 2771211 + | histidinol-phosphatase YPK_2529 2771211 - 2771801 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit TERM 2866 2771992 - 2771972 - g 74 -9 -3.65902 | opp_overlap 2771982 CTGACCGGAGCCAAA GATCCGGC CGCTC GCCAGATC CCACTACTGCGCGAG YPK_2530 2771807 - 2772544 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase TERM 2867 2772997 - 2772985 - g 74 -9.1 -3.77206 | GAGAAGCGTACCAAA GCCAC CAC GTGGC AAACCGAAGATTGGG YPK_2531 2772526 - 2773302 + | imidazoleglycerol phosphate synthase, cyclase subunit YPK_2532 2773296 - 2773910 + | phosphoribosyl-ATP diphosphatase TERM 2868 2773962 - 2773938 - T 88 -9.9 -4.16842 | opp_overlap 2773941, overlap 2773940 2773941 TTCACTGGCAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 2869 2773960 - 2773940 - T 100 -12.5 -3.68324 | opp_overlap 2773941, overlap 2773938 2773941 CACTGGCAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 2870 2773941 - 2773959 + T 100 -16 -4.8048 | opp_overlap 2773940 2773938 2773941 ACTGGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 2871 2773959 - 2773941 - T 100 -16 -2.80512 | opp_overlap 2773941, overlap 2773940 2773938 ACTGGCAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPK_2533 2774498 - 2774040 - | transposase IS200-family protein YPK_2534 2774643 - 2774488 - | hypothetical protein TERM 2872 2774629 - 2774611 - G 100 -16 -3.07307 | opp_overlap 2774611 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2873 2774611 - 2774629 + g 100 -16 -4.36914 | opp_overlap 2774611 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 2874 2774673 - 2774649 - R 100 -10 -5.60993 | opp_overlap 2774649 CTGGGCACAAAAAAA CGCCTCCAAC TTATC ACTGGAGGCG TTTTTATTGGGCAGC TERM 2875 2774649 - 2774673 + r 100 -8.6 -5.06414 | opp_overlap 2774649 CTGGGCACAAAAAAA CGCCTCCA ACTTATCAC TGGAGGCG TTTTTATTGGGCAGC YPK_2535 2776229 - 2774820 - | 6-phosphogluconate dehydrogenase, decarboxylating TERM 2876 2776536 - 2776521 - R 89 -10.4 -4.01603 | overlap 2776514 2776531 TAGGCAAAGAGCAAA GCGCCA CAAA TGGCGC GGCCTAAACTGCCAA YPK_2536 2777508 - 2776615 - | UTP-glucose-1-phosphate uridylyltransferase YPK_2537 2778482 - 2777592 - | UTP-glucose-1-phosphate uridylyltransferase TERM 2877 2777789 - 2777800 + g 72 -5.8 -4.36914 | overlap 2777784 GAATTTCATCCCCCG CACC GCGT GGTG TTTTCTCAAGCAACG TERM 2878 2779902 - 2779915 + G 77 -4.5 -4.83615 | gap 1 AGAAACAGCGATGAG CGAGGG CCA CCC-CG TTTTTATCGCGAATA YPK_2538 2779429 - 2781243 + | IucA/IucC family protein TERM 2879 2781263 - 2781233 - f 73 -7.5 -4.08767 | opp_overlap 2781233 2781236 2781259 TTCATGTTTTCAAAA CCACGTACTGACC CACGT GGTCAGACCGTAG TTTTACGATGTTCGG TERM 2880 2781510 - 2781493 - g 88 -2.5 -5.70829 | opp_overlap 2781494, overlap 2781494 2781496 AATACTAGAAAAAAA TCACGGC AAAA GCCGAGT GCGTTTTAACTGCAC TERM 2881 2782270 - 2782258 - g 75 -3.3 -5.01811 | opp_overlap 2782259, overlap 2782251 2782259 TGATCAAAGTAAAAA CCCGT TTT ACGGT ATCTTGGAGATAGAT TERM 2882 2782435 - 2782396 - g 70 -7.8 -3.85698 | overlap 2782377 2782399 TGGTGGGCGGACAAA TTATGCCCAATCCGCCAC CACC GCATCGGATTGGGCATCC GCCGAAACCCGAACT TERM 2883 2782432 - 2782399 - g 90 -13.9 -3.00946 | overlap 2782377 2782396 TGGGCGGACAAATTA TGCCCAATCCGCCAC CACC GCATCGGATTGGGCA TCCGCCGAAACCCGA YPK_2539 2781473 - 2783734 + | TonB-dependent siderophore receptor TERM 2884 2783757 - 2783778 + F 71 -8.7 -3.39908 | overlap 2783755 AGTTGGATACCCTCA CAGCCGG CCACTTTT CCGGCTG TATCTTTTGCCAACG YPK_2540 2783824 - 2784903 + | periplasmic binding protein TERM 2885 2785360 - 2785372 + G 76 -9.1 -3.84246 | opp_overlap 2785360 2785358 GCGGGCAACGGAATA CGCAC TCG GTGCG TTTGGTGCTTACCGG YPK_2541 2784900 - 2785940 + | transport system permease protein TERM 2886 2786265 - 2786284 + G 81 -12.8 -2.71364 | opp_overlap 2786255 TATTATCGGTATCAC CGCCGGCG CGTC CGCTGGCG TGGTTGCCACCCTAC YPK_2542 2785927 - 2786967 + | transport system permease protein YPK_2543 2786994 - 2787812 + | ABC transporter related YPK_2544 2789783 - 2787939 - | IucA/IucC family protein TERM 2887 2788022 - 2788035 + g 73 -8.1 -3.96469 | opp_overlap 2788021 2788022 CAGGGTCAGCTAAAT CCAGC ATGT GCTGG TTATTGTTGAGCTGT YPK_2545 2790358 - 2789780 - | putative siderophore biosynthetic enzyme YPK_2546 2791656 - 2790358 - | L-lysine 6-monooxygenase (NADPH) TERM 2888 2790389 - 2790406 + g 71 -2.7 -4.87665 | opp_overlap 2790391, overlap 2790371 2790391 AGTGATGGCGCACTG AATTGCT GAAA AGCAATG TTTTTCTCAATCGGA YPK_2547 2793238 - 2791691 - | pyridoxal-dependent decarboxylase TERM 2889 2792053 - 2792034 - G 75 -7.9 -4.14874 | ATAACATGTTCAAAA GCCAAAC CAAGCT GTTTGGC TCCCATAATCCGTAG TERM 2890 2792754 - 2792775 + g 74 -6.5 -4.37886 | overlap 2792756 CTGGTGAAAATACCG TCGCCCTGG CTAC CTAGGGCCA TTTTATCGCGGGTCC TERM 2891 2793388 - 2793360 - R 72 -7.5 -3.9751 | opp_overlap 2793364 AAATAAAGAATACAA CCAAGTTTCTG TCTAATG CAGGAACTTGG CTAACTAATAAGATT YPK_2548 2794168 - 2793389 - | ferric iron reductase TERM 2892 2794518 - 2794540 + H 72 -7.1 -3.91716 | gap 1 TGGATTGATTTTTTT GTG-ATCGAC TCTG GTCGATGCAC TTCTTTAACAAATGG YPK_2549 2794610 - 2796196 + | integral membrane protein TerC TERM 2893 2796285 - 2796250 - T 100 -8.3 -4.85782 | gap 1, opp_overlap 2796251 2796251 2796254, overlap 2796251 2796254 GCCTGGAAAAATAAA TGATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TCT CTTTCCACTACCTAT TERM 2894 2796251 - 2796286 + T 82 -10.5 -3.61922 | gap 1, opp_overlap 2796251 2796250 2796254, overlap 2796251 2796254 CCTGGAAAAATAAAT GA-TTAGGCCCGGTGG AGAAA CCATCGGGCCTATCTC TTTCCACTACCTATT TERM 2895 2796251 - 2796284 + T 100 -14 -3.38522 | gap 1, opp_overlap 2796251 2796250 2796254, overlap 2796251 2796254 CCTGGAAAAATAAAT GATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TC TCTTTCCACTACCTA TERM 2896 2796284 - 2796251 - T 91 -11.8 -3.50746 | gap 1, opp_overlap 2796251 2796251 2796254, overlap 2796250 2796254 CCTGGAAAAATAAAT GATTAGGCCCGGTGG AGAAA CCATCGGGCCTA-TC TCTTTCCACTACCTA TERM 2897 2796254 - 2796282 + T 100 -16.8 -3.26031 | opp_overlap 2796251 2796250 2796254, overlap 2796251 2796251 GGAAAAATAAATGAT TAGGCCCGGTGG AGAAA CCATCGGGCCTA TCTCTTTCCACTACC TERM 2898 2796282 - 2796254 - T 100 -14.6 -2.57916 | opp_overlap 2796254 2796251 2796251, overlap 2796251 2796250 GGAAAAATAAATGAT TAGGCCCGGTGG AGAAA CCATCGGGCCTA TCTCTTTCCACTACC YPK_2550 2798197 - 2796341 - | AsmA family protein TERM 2899 2798058 - 2798072 + g 74 -4.2 -4.99638 | overlap 2798060 TCACCCTCCAACTGC AAGTGG TAA CCACTC TTTTTCTCTACCTGT TERM 2900 2798269 - 2798242 - R 71 -4.8 -4.63592 | TCTCAATAAAAAGAA TGACTAGTCCAG ACTG CTGACCAAGTCA AATGAAGGGAAAGCG YPK_2551 2798965 - 2798384 - | deoxycytidine triphosphate deaminase YPK_2552 2799711 - 2799070 - | uridine kinase TERM 2901 2799379 - 2799395 + g 73 -2.2 -5.0666 | overlap 2799380 AATGATCACTTTTTT AGGTTC TAAAT GAACCG TTTCTTTTTTACGTG TERM 2902 2799884 - 2799922 + r 86 -11.8 -3.07344 | opp_overlap 2799898 CTATTTAAGCCGATC TTGAGCCGGAAGCATCAT TGA ATGACCTTTCCGGCTCAG TGTGTTACGCGCTCA YPK_2553 2801068 - 2799956 - | putative ATPase Mrp YPK_2554 2801333 - 2803360 + | methionyl-tRNA synthetase TERM 2903 2803422 - 2803448 + T 70 -2.9 -4.98255 | gap 1, opp_overlap 2803422 2803424, overlap 2803424 CCTTAAAGAACAAAA TACCGGTCTGGG GTAA CCCT-ACCGGCA TTTTTATGATTGAAA TERM 2904 2803448 - 2803422 - T 78 -5.1 -5.00196 | gap 1, opp_overlap 2803422 2803424, overlap 2803424 CCTTAAAGAACAAAA TACCGGTCTGGG GTAA CCCT-ACCGGCA TTTTTATGATTGAAA YPK_2555 2804319 - 2803489 - | hypothetical protein TERM 2905 2803782 - 2803768 - G 73 -3.6 -4.84274 | TAACGACATCAAAAA GATAAT CGC ATCATC TAGATCAAACCACAC TERM 2906 2804217 - 2804207 - G 89 -3.2 -5.61689 | AAAATTAATAAAAAA TCAC TGC GCGA TATATAAAAATAGGC YPK_2556 2804853 - 2805929 + | putative sugar ABC transporter TERM 2907 2805981 - 2806001 + G 76 -11.1 -3.15544 | opp_overlap 2805982 2805984, overlap 2805984 TGCCGATACCTGAAT ACAGCCGCA ATA TGCGGCTGA TTGGTCACAGTGACC TERM 2908 2806000 - 2805982 - g 91 -14.6 -3.07962 | opp_overlap 2805981 2805984, overlap 2805984 GCCGATACCTGAATA CAGCCGCA ATA TGCGGCTG ATTGGTCACAGTGAC TERM 2909 2805984 - 2805998 + G 76 -11.4 -2.78216 | opp_overlap 2805982 2805984, overlap 2805981 CGATACCTGAATACA GCCGCA ATA TGCGGC TGATTGGTCACAGTG TERM 2910 2805998 - 2805984 - g 79 -11.4 -3.09785 | opp_overlap 2805984 2805981, overlap 2805982 CGATACCTGAATACA GCCGCA ATA TGCGGC TGATTGGTCACAGTG TERM 2911 2806140 - 2806126 - g 90 -9.2 -4.63184 | opp_overlap 2806126 AAGGGATGCCAAAAA CCCGCG TCC CGCAGG TTTCATCGCTGCGCC YPK_2557 2805947 - 2807200 + | hypothetical protein TERM 2912 2807377 - 2807350 - f 93 -9.8 -4.39226 | opp_overlap 2807352, overlap 2807347 2807352 ATAACTAGAAAATAA TAGCAGATCGGC TCTG GCCGAACTGCTT CCTGCAAAAATTTTC TERM 2913 2807375 - 2807352 - f 100 -12.4 -3.78091 | opp_overlap 2807352, overlap 2807350 2807347 AACTAGAAAATAATA GCAGATCGGC TCTG GCCGAACTGC TTCCTGCAAAAATTT TERM 2914 2807352 - 2807375 + F 93 -12.4 -3.1506 | opp_overlap 2807352 2807350 2807347 AACTAGAAAATAATA GCAGATCGGC TCTG GCCGAACTGC TTCCTGCAAAAATTT TERM 2915 2807559 - 2807533 - f 71 -2.2 -5.16681 | opp_overlap 2807556, overlap 2807538 CTAAAAATAAGAAAA TACATGCAAAGA TTC TCATCGCGCGTA ACCAATCTGCTGATT TERM 2916 2808458 - 2808469 + G 75 -5.8 -4.5442 | TTCCGTTATGGATGC TGGC AATG GCCA TTTTCTCATTGGGCG YPK_2558 2807536 - 2808717 + | major facilitator transporter TERM 2917 2808981 - 2808999 + G 71 -8.8 -3.6512 | ATATGATGTCACTTT GCTGGCAG TAC CTGCGAGC TTTCACCATTATTTA YPK_2559 2808959 - 2809366 + | LrgA family protein TERM 2918 2809800 - 2809816 + G 80 -7.3 -4.62904 | TGGTTTACCCGCTAT TAGCGCA GTT TGCGTTA TTTTTGCCGGTATTT YPK_2560 2809363 - 2810058 + | LrgB family protein TERM 2919 2810069 - 2810093 + F 71 -9.3 -2.98729 | overlap 2810092 GTTGAACCCACTTTC CCCTGGCGT GATAGCG ACGTCAGGG TCTGTAATCCTTATC YPK_2561 2810384 - 2811268 + | cytidine deaminase TERM 2920 2812715 - 2812699 - g 76 -2.2 -5.25803 | AATTGGTACAAAAAA GTGACG ACCTA CACCAC TGGAATCTGCACAAT YPK_2562 2811624 - 2813321 + | malate dehydrogenase TERM 2921 2813355 - 2813328 - f 73 -8.3 -3.65812 | overlap 2813329 TCGTTTTGAATATAA TCCGGCCTGTG CTATAC CGCAGGCCGGG TACTCAGATGCTATC TERM 2922 2813354 - 2813329 - f 83 -11.8 -2.79273 | overlap 2813328 CGTTTTGAATATAAT CCGGCCTGTG CTATAC CGCAGGCCGG GTACTCAGATGCTAT TERM 2923 2813436 - 2813425 - f 71 -3 -5.06816 | AGCGTTGAACAAAAA GTTA CTTG TAAC CCCAAAGCACATGCG TERM 2924 2814192 - 2814204 + G 71 -6.9 -4.26871 | CCTCTATATTCTTAA GCGGG AAC CTCGC TTTCTTGGTCCATTG YPK_2563 2813602 - 2814339 + | hypothetical protein TERM 2925 2814602 - 2814628 + T 100 -13.1 -4.68846 | gap 1, opp_overlap 2814597 TTGTCATTAACTTCA GCCAGT-AGGGC TATC GCCCTGACTGGC TTTTACTTTATTCCT YPK_2564 2815794 - 2814784 - | monosaccharide-transporting ATPase YPK_2565 2817335 - 2815815 - | ABC transporter related TERM 2926 2817012 - 2816983 - G 85 -2.8 -5.64274 | opp_overlap 2816983 2816985 2817003, overlap 2816985 TGATCGACAAAAAAA CCTTTGGTTGGA TAGCGC CCCAACCACATG TTGTCCATTACTGTA TERM 2927 2817074 - 2817094 + g 71 -6.9 -4.30448 | overlap 2817087 CCATCGAAACACCCT GTTCTAATG CTT CTTTAGAAC TTTTAAATTCAATTT YPK_2566 2818557 - 2817565 - | periplasmic binding protein/LacI transcriptional regulator TERM 2928 2817601 - 2817623 + g 75 -3.4 -5.14698 | opp_overlap 2817602, overlap 2817602 ATTATCTTTATCAAC ACCTACGTAT GGA ATACGTACGA TTTTGTTTTCAATTT TERM 2929 2817973 - 2817984 + g 70 -2.2 -4.86621 | TAACTGCAATTGTTG GGTT GGCA AGCC TTTTTCATTCAGGGT YPK_2567 2820471 - 2819305 - | hypothetical protein TERM 2930 2819693 - 2819681 - G 80 -4.7 -5.14965 | overlap 2819682 ACTTGTAGCAAAAAA CCCGC CCA GCGGT AATCCCAACCGACAT TERM 2931 2819692 - 2819682 - G 71 -8.2 -3.68256 | overlap 2819681 CTTGTAGCAAAAAAC CCGC CCA GCGG TAATCCCAACCGACA TERM 2932 2820071 - 2820057 - G 73 -10 -3.30418 | overlap 2820055 2820053 CACCGATCAAATAGA GTACCG CGC CGGTAC GTAATAAGCTGGCTG YPK_2568 2821188 - 2820526 - | GTP cyclohydrolase I TERM 2933 2821250 - 2821278 + r 93 -13.3 -2.84 | opp_overlap 2821227, overlap 2821247 CGGGTCACACCCGAA TTTCGCTCTCACT CTA ATTGAGAGCGAAA TGATTATCCAGTGAT YPK_2569 2822523 - 2821372 - | hypothetical protein TERM 2934 2822148 - 2822108 - G 79 -11.7 -3.19824 | overlap 2822106 2822128 2822130 2822131 CCACTAATGAATATA CCGGCACCCGGCCCGGC AAATACG GCCGCACTGAGCGCCGG ACGGCCAAAATGTGC YPK_2570 2822659 - 2823528 + | LysR family transcriptional regulator TERM 2935 2823915 - 2823925 + G 73 -8.2 -3.87815 | overlap 2823923 GTTAGTGCGGATTGT CGCC AGT GGCG TTTGTCACACTGACG YPK_2571 2823802 - 2824941 + | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase TERM 2936 2825004 - 2825043 + G 78 -12 -2.6252 | opp_overlap 2825018, overlap 2825001 2825001 GAGCATCGGATGTTT GGCGGCTGGCAACAGCGC TACC GCCATGCTGCCAGCAGCC TGAATTGTCATATGA YPK_2572 2824962 - 2825804 + | S-formylglutathione hydrolase TERM 2937 2825844 - 2825857 + F 95 -8.1 -5.10461 | opp_overlap 2825840 CACATAAAACCCCAA GCCCT TTCG AGGGC TTTTTATTCGATAGA TERM 2938 2826234 - 2826216 - g 71 -4.6 -4.58698 | CGAAATTAAAAATAA TACCCTAC ACA GTAAGATA ACGGCATGGAGTTGG YPK_2573 2826073 - 2826273 + | hypothetical protein TERM 2939 2826627 - 2826617 - g 100 -5.4 -5.81622 | ACAAAATGAAAAAAA CATC AAA GATG TCGCCTACGCTTTAC TERM 2940 2827330 - 2827340 + G 75 -5.4 -4.72272 | CTAATTATCAATTAC TGAC AGA GTCA TTTTTCATCGCAACA TERM 2941 2827738 - 2827719 - g 78 -5.8 -4.72272 | TTTGGTTATGAAAAA GAAAATGT CGTG ACATTTCC ACTAAGCGATGAATT TERM 2942 2828017 - 2828003 - g 78 -5.8 -4.76041 | opp_overlap 2828003 TACACCCAGTAAAAA TGATAA TAC TTATCA TGCTATAGTGACAAA YPK_2574 2826357 - 2828717 + | hypothetical protein YPK_2575 2828719 - 2829981 + | RND family efflux transporter MFP subunit YPK_2576 2829983 - 2830651 + | ABC transporter related YPK_2577 2830661 - 2831971 + | radical SAM domain-containing protein TERM 2943 2831966 - 2831995 + F 72 -9.3 -3.11687 | opp_overlap 2831964 TATCTGGCAGATATT CGTTGAAGCCACA TCAT TATGGCGTCAACG TTGCCTCATGATTCA TERM 2944 2832131 - 2832119 - f 74 -6.3 -4.56775 | ATGTGTTGGTAAAAA CATTG TTG CAATG AAAGTTATATTGAAG TERM 2945 2832352 - 2832327 - f 100 -11.3 -4.34345 | TATATACGATGAAAA TGATACTGCTC GTAA AAGCAGTATCA AGCCATCTCATTTTT YPK_2578 2832506 - 2833780 + | molybdenum cofactor synthesis domain-containing protein YPK_2579 2833782 - 2834552 + | molybdopterin synthase sulfurylase MoeB YPK_2580 2835271 - 2834624 - | hypothetical protein TERM 2946 2835463 - 2835445 - R 100 -11 -5.80248 | opp_overlap 2835445 GAAGACATAAAAAAA GCTGACGC ATA GCATCAGC TTTTTTTGTTAGGTC TERM 2947 2835445 - 2835463 + r 100 -8.8 -5.8187 | opp_overlap 2835445 GAAGACATAAAAAAA GCTGACGC ATA GCATCAGC TTTTTTTGTTAGGTC YPK_2581 2837084 - 2835489 - | ABC transporter related TERM 2948 2837290 - 2837264 - H 80 -3.6 -5.40625 | ACATGACAGAAAAAA TCGTGCCATCAA AGC TCGCAGACACGA CGTTTTACCTATATA TERM 2949 2837888 - 2837878 - g 80 -4 -5.28166 | overlap 2837887 GAAAATCAACAAAAA CATT ATA AATG CTGAGACCCAACATA TERM 2950 2837956 - 2837971 + G 79 -3.2 -5.18371 | AGAACGCTATAACGC CTCAAC AACA GCTGAG TTTTATTTTGTCGAA YPK_2582 2837768 - 2838391 + | hypothetical protein TERM 2951 2838453 - 2838488 + T 84 -9.7 -3.84246 | gap 1, opp_overlap 2838452 2838451, overlap 2838455 AATACAGTTTAAAGG TCGCGCTC-CAGCAGG ATCAC CCCGCTGTGAGCGCTA TTATTAATTAATAAT TERM 2952 2838455 - 2838486 + T 100 -12.3 -3.50119 | gap 1, opp_overlap 2838452 2838451, overlap 2838453 TACAGTTTAAAGGTC GCGCTC-CAGCAGG ATCAC CCCGCTGTGAGCGC TATTATTAATTAATA YPK_2583 2839966 - 2838599 - | ImpA domain-containing protein TERM 2953 2839327 - 2839312 - G 80 -9 -4.19817 | GTGAGGCAGGTAAAA CCACCT GAAC AGGTGG CGGGGCCGGTTCGCT TERM 2954 2839860 - 2839876 + g 71 -5 -4.56702 | opp_overlap 2839854 2839852, overlap 2839862 CAGTCAACATCCGGG CGGGCC GGGTG GGCCAG TTTATTTAATTCACC YPK_2584 2840443 - 2839991 - | type VI secretion system lysozyme-related protein YPK_2585 2841024 - 2840443 - | hypothetical protein YPK_2586 2842084 - 2840999 - | type VI secretion protein YPK_2587 2843811 - 2842048 - | type VI secretion protein YPK_2588 2844502 - 2844032 - | hypothetical protein TERM 2955 2844161 - 2844145 - G 71 -6.5 -4.254 | overlap 2844136 TCAATACTGAACAAA CTCCAGA GGC TCTGGTG AGCATAAATGCTTGT YPK_2589 2845560 - 2844502 - | hypothetical protein YPK_2590 2847179 - 2845578 - | type VI secretion-associated protein TERM 2956 2846319 - 2846345 + g 75 -11.4 -2.54523 | CTGTACGCGATATTC CGGGCGCGGCGG TAC CAGCCGGGTCCG TCCGTTCACATCTAA TERM 2957 2846440 - 2846458 + g 74 -6.6 -4.371 | opp_overlap 2846410, overlap 2846426 2846410 2846453 CCCTGCGGCTGGTTG CGCAGGTA TTT TGCCAGCG TTTTGGTCTGATCGA YPK_2591 2850645 - 2847223 - | ImcF domain-containing protein TERM 2958 2848246 - 2848267 + g 74 -6.5 -4.42653 | overlap 2848249 CGTTTGCAGGCTCAG CGAGCTGTC CGAC GACAGCCTG TTTTGTGCATCGCCT TERM 2959 2848691 - 2848706 + g 75 -6 -4.61199 | overlap 2848690 CAGTCAATTTCTTCG CGGCGG GAGG CCACCG TTTTATCTATCGCCT TERM 2960 2849108 - 2849147 + g 71 -5 -4.60487 | TCGGCTTTTTCCGGG CGGGCCATCATCAGATAA GCCT TTAACTGGTCATAGCCTG TTTTTGCCCGTGCTG TERM 2961 2849162 - 2849174 + g 72 -10.5 -3.01791 | GTTTTTGCCCGTGCT GCCCG TTG CGGGC TGTTGGCGGGCAGCT YPK_2592 2851874 - 2850642 - | hypothetical protein TERM 2962 2851714 - 2851697 - G 83 -9.1 -4.44915 | GAACCAGCCAGAAAA CCACCGG GATA CCGATGG CAAACCACCAGAACT YPK_2593 2852763 - 2851981 - | hypothetical protein YPK_2594 2853246 - 2852812 - | hypothetical protein YPK_2595 2853857 - 2853585 - | hypothetical protein YPK_2596 2854720 - 2853902 - | hypothetical protein YPK_2597 2855034 - 2854732 - | hypothetical protein YPK_2598 2855605 - 2855039 - | hypothetical protein YPK_2599 2855923 - 2855804 - | hypothetical protein TERM 2963 2855884 - 2855906 + g 74 -6.3 -4.34402 | gap 1, overlap 2855885 TATTCTTTAATACGG TCGT-CGCAG TACC CTGCGCACGG TTTTCCTGTACAGAC YPK_2600 2856472 - 2855972 - | type VI secretion protein TERM 2964 2856887 - 2856912 + r 82 -4.8 -5.41143 | opp_overlap 2856889, overlap 2856889 AGGAATTTGGGAAGT GATTTGTAGG AATTCG CCTACAAATA TTTTTTTCAGAAATG TERM 2965 2856889 - 2856910 + r 75 -7.4 -4.34482 | opp_overlap 2856889, overlap 2856887 GAATTTGGGAAGTGA TTTGTAGG AATTCG CCTACAAA TATTTTTTTCAGAAA YPK_2601 2857379 - 2857137 - | hypothetical protein YPK_2602 2858283 - 2857435 - | putative acyltransferase YPK_2603 2858630 - 2858382 - | putative acyl carrier protein YPK_2604 2859010 - 2858678 - | hypothetical protein YPK_2605 2859993 - 2859205 - | short-chain dehydrogenase/reductase SDR YPK_2606 2860748 - 2859996 - | enoyl-CoA hydratase/isomerase YPK_2607 2861469 - 2860750 - | enoyl-CoA hydratase/isomerase TERM 2966 2861184 - 2861174 - G 73 -3.2 -4.87592 | CTAGACAGAATAAAA TCGA CAA CCGA CAGTAAGGCAAGCCC YPK_2608 2862700 - 2861462 - | hydroxymethylglutaryl-coenzyme A synthase TERM 2967 2861838 - 2861850 + g 77 -4.1 -5.03715 | opp_overlap 2861838 AAAATGCTGCCACAA TAGGT CGC GCCTA TTTTTTGCGCGTAAT YPK_2609 2863453 - 2862716 - | short-chain dehydrogenase/reductase SDR TERM 2968 2863460 - 2863447 - G 73 -2.4 -5.07486 | CACCGCTAATAAAAA GGTT CATGTT AACC ATGATATCGACTAAA YPK_2610 2864738 - 2863455 - | Beta-ketoacyl synthase TERM 2969 2864516 - 2864498 - G 73 -5.2 -4.56597 | TCGTCTGTTTAAAAA CCTTCTCG GCA CGGGAAAG AACTATATCGGGAAT YPK_2611 2865252 - 2864728 - | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YPK_2612 2865836 - 2865516 - | hypothetical protein TERM 2970 2866968 - 2866958 - g 71 -6.8 -4.28548 | AGGGATTGACCAAAA CAGC AGC GCTG GAGGTTGCGACTACT YPK_2613 2866465 - 2867211 + | short-chain dehydrogenase/reductase SDR YPK_2614 2867365 - 2869782 + | FAD linked oxidase domain-containing protein TERM 2971 2869805 - 2869824 + T 91 -10.6 -4.08064 | CTCAGCGCCTTATCT CCCCGCCC TGAA GGACGGGG TTTTACGGCGAACTT YPK_2615 2872968 - 2869924 - | cytotoxic necrotizing factor TERM 2972 2873294 - 2873282 - R 75 -2 -5.29782 | opp_overlap 2873282 TATATCCATAAAAAA TACT TCGTG AGTA TATATTGGATATATA YPK_2616 2873757 - 2873470 - | transposase YPK_2617 2874001 - 2873801 - | hypothetical protein YPK_2618 2874509 - 2874838 + | TusE/DsrC/DsvC family sulfur relay protein YPK_2619 2875168 - 2874890 - | acylphosphatase TERM 2973 2875012 - 2875033 + g 73 -9.5 -3.33162 | gap 1 GACGTTCAACTGCTT GTGGATTGCC GCT GGCAA-CCAC TTCTACGCTACCATC TERM 2974 2876378 - 2876403 + G 75 -10.5 -3.2964 | gap 1, opp_overlap 2876368 GAGCAGTTCCGCCAA GCTGCGGATCAC CCA GTGATC-GCGGC TTATCCAGAAGGTTT YPK_2620 2875262 - 2876452 + | PUA domain-containing protein YPK_2621 2876513 - 2876830 + | hemimethylated DNA binding protein TERM 2975 2876874 - 2876904 + T 100 -9.7 -5.00616 | overlap 2876875 TGATTGCCAGGTTCG CCACCCTGTGAGC AGCAC GCTGACAGGGTGC TTTTTTAGAAAGCCC TERM 2976 2876875 - 2876903 + T 100 -13.2 -3.60048 | overlap 2876874 GATTGCCAGGTTCGC CACCCTGTGAGC AGCAC GCTGACAGGGTG CTTTTTTAGAAAGCC YPK_2622 2877355 - 2876939 - | CoA-binding domain-containing protein YPK_2623 2877671 - 2878351 + | hypothetical protein YPK_2624 2878530 - 2878994 + | methylglyoxal synthase TERM 2977 2879028 - 2878999 - T 86 -11.5 -3.29187 | gap 1, opp_overlap 2879003, overlap 2878994 2879003 ACCTAAAATAGGTAA CT-CACCCGGTGGT TCA ACCACCGGGTTTAG TATTGAGCATCGCTT TERM 2978 2879003 - 2879023 + T 100 -16.9 -3.92592 | opp_overlap 2878994 2879003 2878999 AAAATAGGTAACTCA CCCGGTGGT TCA ACCACCGGG TTTAGTATTGAGCAT TERM 2979 2879023 - 2879003 - T 100 -16.9 -2.58183 | opp_overlap 2879003, overlap 2878994 2878999 AAAATAGGTAACTCA CCCGGTGGT TCA ACCACCGGG TTTAGTATTGAGCAT YPK_2625 2881109 - 2879055 - | UvrD/REP helicase TERM 2980 2881261 - 2881271 + H 71 -2.4 -5.08824 | opp_overlap 2881248 TAGGCTATCGCTCAG CCAC ATT GCGG TTTTTTCACTCAACG YPK_2626 2881303 - 2881749 + | hypothetical protein TERM 2981 2883182 - 2883204 + G 73 -7.1 -4.19369 | gap 1, opp_overlap 2883184 TCTTGAGGGGCAACT CACC-CTGAT TGTG ATCAGTGGTG TTCTGTTTTTTGCGT TERM 2982 2883616 - 2883589 - g 71 -4 -4.66388 | opp_overlap 2883593, overlap 2883593 2883597 AAAACGATAAAGAAA CTCAGGAAGCGG CATT CCGCTTACTTTG CCTGAACCACACCAT YPK_2627 2881779 - 2883917 + | hypothetical protein TERM 2983 2883945 - 2883927 - T 84 -11.7 -3.09933 | opp_overlap 2883926 2883927 GCCTAAGGTACCCAA GGGCCAC CCATC GTGGCCC ATTATACGGTTTCAT TERM 2984 2883927 - 2883945 + T 80 -11.7 -2.63747 | opp_overlap 2883927, overlap 2883926 GCCTAAGGTACCCAA GGGCCAC CCATC GTGGCCC ATTATACGGTTTCAT YPK_2628 2884654 - 2884019 - | regulator of competence-specific genes TERM 2985 2884754 - 2884735 - H 75 -5.8 -4.68506 | AACTAATTGCAAAAA TACGCAAT ATGG ATTACGTA GCCAAACATAAAATG YPK_2629 2884883 - 2885389 + | cell division inhibitor SulA TERM 2986 2885697 - 2885673 - f 71 -5 -4.62336 | ACGGGAGCGTAAAAA CCTTGGCGAA GAATT TTAACCAAGG GCTTAGCTTTTAAAG YPK_2630 2885747 - 2886808 + | OmpA domain-containing protein TERM 2987 2886830 - 2886846 + F 100 -11.5 -5.93809 | opp_overlap 2886830 TTCTTTCGTGAAAAA CCCCGCG CTA TGCGGGG TTTTTTTTGTGCCCA TERM 2988 2886846 - 2886830 - f 100 -10.8 -4.56597 | opp_overlap 2886830 TTCTTTCGTGAAAAA CCCCGC GCTAT GCGGGG TTTTTTTTGTGCCCA TERM 2989 2886885 - 2886867 - f 100 -16 -4.36914 | opp_overlap 2886867 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 2990 2886867 - 2886885 + F 100 -16 -3.07307 | opp_overlap 2886867 TTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_2631 2886998 - 2887456 + | transposase IS200-family protein TERM 2991 2887530 - 2887562 + T 100 -11.3 -4.04149 | opp_overlap 2887537, overlap 2887534 2887536 2887537 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTATCCTGTGATTC TERM 2992 2887534 - 2887558 + T 100 -9.9 -4.60949 | opp_overlap 2887537, overlap 2887530 2887536 2887537 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTATCCTGTG TERM 2993 2887536 - 2887556 + T 100 -12.5 -3.90309 | opp_overlap 2887537, overlap 2887534 2887530 2887537 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTATCCTG TERM 2994 2887537 - 2887555 + T 100 -16 -2.93101 | opp_overlap 2887537, overlap 2887536 2887534 2887530 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCCT TERM 2995 2887555 - 2887537 - T 100 -16 -4.8048 | opp_overlap 2887537 2887536 2887534 2887530 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTATCCT YPK_2632 2888080 - 2887625 - | hypothetical protein TERM 2996 2888005 - 2888017 + g 80 -4.8 -5.0133 | GGCGGGTAATGGCTT CACC TTCAC GGTG TTTTTTGACCAAATA TERM 2997 2889069 - 2889058 - gH 75 -5.8 -4.65916 | opp_overlap 2889057 2889058 CCTATTGCAACAAAA GCAG CTCC CTGC CTTATCTGCCGATGC YPK_2633 2888420 - 2890042 + | hypothetical protein YPK_2634 2890003 - 2890629 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA TERM 2998 2890653 - 2890689 + T 79 -6.8 -4.69664 | gap 1, opp_overlap 2890656 2890659, overlap 2890656 AGTCAATGCATTGTA AAATAAGGCGAATATGA TTAA TCATGT-CGCCTTATTG TTTTTACGTGATATA TERM 2999 2890656 - 2890686 + T 87 -8.5 -4.4521 | gap 1, opp_overlap 2890656 2890659, overlap 2890653 CAATGCATTGTAAAA TAAGGCGAATATGA TTAA TCATGT-CGCCTTA TTGTTTTTACGTGAT YPK_2635 2891083 - 2890895 - | hypothetical protein TERM 3000 2891780 - 2891792 + G 71 -9.1 -3.61232 | opp_overlap 2891778, overlap 2891778 CATTCTTAGTGAATT TGGCC GCT GGCCA TGTTTCTATCAAACA YPK_2636 2891329 - 2892603 + | 3-oxoacyl-(acyl-carrier-protein) synthase 2 TERM 3001 2892637 - 2892619 - T 100 -11.7 -4.67942 | opp_overlap 2892614 2892613 CGCAATAAATGAAAA CCTCCGC CTAAT GCGGAGG TTACCCTTGATAATG TERM 3002 2893078 - 2893037 - T 70 -5.9 -4.3851 | overlap 2893038 GATATTAAATAGAAA CCCCCTTCCCCTGACAAGA TGAT TATTACCAGAGAAAGAGGA TTAGACTGATTTAGA YPK_2637 2893680 - 2893102 - | hypothetical protein YPK_2638 2895329 - 2893677 - | hypothetical protein YPK_2639 2896602 - 2895316 - | PqiA family integral membrane protein YPK_2640 2898644 - 2896731 - | ABC transporter related TERM 3003 2896868 - 2896848 - G 78 -9.1 -4.07568 | opp_overlap 2896867, overlap 2896852 GTGTGGGCGGGAAAA GAAATCAGT ATC ACTGACTTC AGCCTGTAACTTGCT TERM 3004 2896864 - 2896852 - G 77 -6.3 -4.64861 | overlap 2896848 GGGCGGGAAAAGAAA TCAGT ATC ACTGA CTTCAGCCTGTAACT YPK_2641 2900770 - 2898650 - | putative RNA methylase YPK_2642 2900873 - 2901982 + | MOSC domain-containing protein YPK_2643 2902559 - 2902008 - | hypothetical protein TERM 3005 2902285 - 2902270 - G 78 -7.6 -4.36914 | GGTTGCTGTACAAAA TGCCAA CTTT TTGGCA TGAGTGGTTTCAAGA YPK_2644 2903752 - 2902742 - | dihydroorotate oxidase YPK_2645 2907003 - 2904388 - | aminopeptidase N TERM 3006 2906890 - 2906903 + g 75 -3.7 -5.03314 | TTTTACTTTACTGAC CGCCG TTAC CGTCG TTTTTTGCGCATCCA YPK_2646 2907188 - 2907081 - | hypothetical protein TERM 3007 2907156 - 2907139 - G 95 -4.1 -5.76949 | CAGTTGTAAAAAAAA CCTAGAT GAGA ACCCAGG CGACTCCGGCAAATA TERM 3008 2908618 - 2908603 - g 85 -7.6 -4.77036 | GCGCATTATGAAAAA TTGGGT ATTG ACCCAA TGAAAAAGGTATTGG YPK_2647 2907685 - 2908905 + | nicotinate phosphoribosyltransferase YPK_2648 2909380 - 2910780 + | asparaginyl-tRNA synthetase TERM 3009 2910814 - 2910844 + F 100 -9.8 -5.09426 | opp_overlap 2910817 2910822, overlap 2910815 2910817 2910822 AACGTCAATTTGTAC AAATAAAAGCCAGC TCT GCTGGCTTTTATCA TTTTTTAAAATTCGA TERM 3010 2910815 - 2910843 + F 100 -13.3 -3.64933 | opp_overlap 2910817 2910822, overlap 2910814 2910817 2910822 ACGTCAATTTGTACA AATAAAAGCCAGC TCT GCTGGCTTTTATC ATTTTTTAAAATTCG TERM 3011 2910817 - 2910841 + F 100 -15.9 -3.39328 | opp_overlap 2910817 2910822, overlap 2910815 2910814 2910822 GTCAATTTGTACAAA TAAAAGCCAGC TCT GCTGGCTTTTA TCATTTTTTAAAATT TERM 3012 2910841 - 2910817 - f 100 -15.9 -3.89614 | opp_overlap 2910815 2910814 2910817 2910822, overlap 2910822 GTCAATTTGTACAAA TAAAAGCCAGC TCT GCTGGCTTTTA TCATTTTTTAAAATT TERM 3013 2910822 - 2910836 + F 100 -11.4 -4.76171 | opp_overlap 2910822 2910817, overlap 2910817 2910815 2910814 TTTGTACAAATAAAA GCCAGC TCT GCTGGC TTTTATCATTTTTTA TERM 3014 2910836 - 2910822 - f 100 -11.4 -4.99043 | opp_overlap 2910817 2910815 2910814 2910822, overlap 2910817 TTTGTACAAATAAAA GCCAGC TCT GCTGGC TTTTATCATTTTTTA YPK_2649 2911078 - 2912160 + | porin TERM 3015 2912226 - 2912207 - f 95 -7.8 -5.09426 | opp_overlap 2912207 CCTAAGTTGAAAAAA GACAGGGC CTCG GCTCTGTC TTTTTGTTTCTATTT TERM 3016 2912207 - 2912226 + F 100 -10 -5.48623 | opp_overlap 2912207 CCTAAGTTGAAAAAA GACAGGGC CTCG GCTCTGTC TTTTTGTTTCTATTT TERM 3017 2912272 - 2912288 + F 73 -5.1 -4.62336 | overlap 2912245 2912244 AGATTACTCTGTCTA TCGGC CTATTTT GCCGA TTTTTCACCTCAGAT TERM 3018 2912834 - 2912821 - g 73 -2.3 -5.04325 | GCCAAACCATAAAAA CGTCT TCGA AGCCG CAGGGCTGGAAGTGG YPK_2650 2912417 - 2913607 + | aspartate transaminase YPK_2651 2913721 - 2913578 - | hypothetical protein TERM 3019 2913645 - 2913662 + g 87 -11.3 -4.21462 | opp_overlap 2913645 TGACTGACCATAAAA GGATGGC CCAA GCCATCC TTTTGACTGGTCACT TERM 3020 2913662 - 2913645 - G 91 -11.3 -4.4767 | opp_overlap 2913645 TGACTGACCATAAAA GGATGGC CCAA GCCATCC TTTTGACTGGTCACT TERM 3021 2913748 - 2913719 - G 70 -7.9 -3.94482 | opp_overlap 2913720 2913726, overlap 2913721 2913726 ATAAACGAAAGAGAA CACAAAAGACGCC TTCC GGCATCTTTTGCT ATTGAACATTCATCT TERM 3022 2913746 - 2913721 - G 89 -12.7 -3.53929 | opp_overlap 2913720 2913726, overlap 2913719 2913726 AAACGAAAGAGAACA CAAAAGACGCC TTCC GGCATCTTTTG CTATTGAACATTCAT TERM 3023 2913741 - 2913726 - R 82 -6.8 -4.80729 | opp_overlap 2913726 2913720, overlap 2913721 2913719 AAAGAGAACACAAAA GACGCC TTCC GGCATC TTTTGCTATTGAACA YPK_2652 2914489 - 2913842 - | beta-lactamase domain-containing protein YPK_2653 2915098 - 2914550 - | hypothetical protein TERM 3024 2915350 - 2915337 - R 71 -2.3 -5.08601 | opp_overlap 2915348 TTATTGCAATAAAAA CTCAG CCTG CTGTG AGATTTGTGCACCAG YPK_2654 2917178 - 2915322 - | peptidoglycan binding domain-containing protein TERM 3025 2917381 - 2917362 - R 100 -7.1 -5.8096 | opp_overlap 2917362 TACAAAAAATAAAAA TGGCCGC TTCTGT GCGACCA TTTAATAAAACTAAT YPK_2655 2921883 - 2917426 - | chromosome segregation and condensation protein MukB domain-containing protein TERM 3026 2918489 - 2918503 + g 73 -8.5 -3.82603 | TCACGGCGGTGCAAG CGGCG CTCAA CGCCG TTATCTTTCACCATT TERM 3027 2921238 - 2921228 - G 71 -6.8 -4.20367 | overlap 2921229 TCTGGCAATAAATAA TCGC GTA GCGA GCGAGTAATGGCGCT YPK_2656 2922608 - 2921880 - | chromosome segregation and condensation protein MukE YPK_2657 2923911 - 2922589 - | chromosome segregation and condensation protein MukF YPK_2658 2924693 - 2923908 - | methyltransferase type 11 TERM 3028 2924323 - 2924291 - G 71 -4.2 -4.7373 | gap 1, opp_overlap 2924291 2924295, overlap 2924294 2924295 2924304 TTAGCGTATCAAAAA GTATTTGCAGAACCT GCTG AGGTTCAGC-AATCC ATTCTAATACCGCAT TERM 3029 2924412 - 2924426 + g 71 -4.2 -4.7373 | overlap 2924414 TTGTATAAATTGCAT GTTGTG GCT CACACC TTTTTCGTGAGCTGC YPK_2659 2926378 - 2925485 - | hypothetical protein TERM 3030 2926720 - 2926696 - R 100 -12.1 -4.15703 | opp_overlap 2926692 GGTTAGAAATAACAA CGCCAGAGCCC GGT AGGTTCTGGCG TAAAGTTTCCGTCGC YPK_2660 2927493 - 2926741 - | 3-deoxy-D-manno-octulosonate cytidylyltransferase YPK_2661 2927672 - 2927490 - | hypothetical protein TERM 3031 2928194 - 2928214 + r 100 -12.6 -3.90112 | opp_overlap 2928194 ACGAGAAGGGAGAAA CGGCTACC GATGA GGTAGCCG TTTGCTTAGAAAGCG TERM 3032 2928214 - 2928194 - R 100 -12.6 -4.00468 | opp_overlap 2928194 ACGAGAAGGGAGAAA CGGCTACC GATGA GGTAGCCG TTTGCTTAGAAAGCG YPK_2662 2928429 - 2928220 - | cold-shock DNA-binding domain-containing protein TERM 3033 2928545 - 2928560 + H 71 -4.6 -4.70046 | opp_overlap 2928546, overlap 2928546 TGATTTTATGAAAAA ACCGCA TAAT TGCGGG TTTTGTAATTTTGTC TERM 3034 2928559 - 2928546 - H 95 -8.1 -5.15634 | opp_overlap 2928545 2928546 GATTTTATGAAAAAA CCGCA TAAT TGCGG GTTTTGTAATTTTGT TERM 3035 2928588 - 2928610 + H 74 -4.3 -4.93877 | gap 1 GTCTATCTTGGTGAA TGATTA-GCA CGCT TGCATAATCA TTTTATTTCCTGAGA TERM 3036 2930523 - 2930492 - g 76 -11 -3.18681 | gap 1, overlap 2930496 2930497 CTGCAACTCTACGAA GCA-ACCCAGCAACG TTC CGTTGCTGAATGTGC AGCCGCCCTCAAACT TERM 3037 2930518 - 2930496 - g 75 -10.6 -3.40639 | overlap 2930492 2930497 AACTCTACGAAGCAA CCCAGCAACG TTC CGTTGCTGAA TGTGCAGCCGCCCTC TERM 3038 2930517 - 2930497 - g 75 -11.9 -2.63901 | overlap 2930496 2930492 ACTCTACGAAGCAAC CCAGCAACG TTC CGTTGCTGA ATGTGCAGCCGCCCT YPK_2663 2929148 - 2930557 + | hypothetical protein YPK_2664 2931551 - 2930565 - | tetraacyldisaccharide 4'-kinase TERM 3039 2931357 - 2931367 + g 71 -6.8 -4.19238 | opp_overlap 2931356 TTCAACCAACCAGAT CACC ACC GGTG TTTTACCGTTCCCCC YPK_2665 2933296 - 2931548 - | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA TERM 3040 2932750 - 2932734 - G 74 -6.5 -4.33274 | CTGATATTACGAAAA CGTTTGG ATA CCAGACG GATCGAAATAGACAC YPK_2666 2935623 - 2933332 - | DNA internalization-related competence protein ComEC/Rec2 TERM 3041 2936110 - 2936091 - R 100 -7.1 -5.81412 | opp_overlap 2936091 TTTACGCAAAAAAAA CGATGCC GATAAG GGCACCG TTTCGTATCAGCGTT YPK_2667 2936440 - 2936156 - | integration host factor, beta subunit YPK_2668 2938174 - 2936501 - | ribosomal protein S1 YPK_2669 2939040 - 2938348 - | cytidylate kinase TERM 3042 2938849 - 2938832 - G 74 -4.1 -4.86731 | TTCTGTGAAACAAAA CGAACAT CGAG ATGTGCG GCAAGTGGTACCAAT TERM 3043 2939099 - 2939065 - R 100 -12.3 -3.64703 | gap 1, opp_overlap 2939060, overlap 2939096 CTTTCGGTAGGCAAA CCTCT-TGTCTGCCCC CGGC AGGGCAAACACAGAGG TAGCATTATACGCTG YPK_2670 2940639 - 2939353 - | 3-phosphoshikimate 1-carboxyvinyltransferase YPK_2671 2941897 - 2940812 - | phosphoserine aminotransferase TERM 3044 2942148 - 2942162 + r 71 -8.6 -3.56568 | opp_overlap 2942148 GACTGGGGTGACAAA TCTGCT GGG AGCAGA TTTGAACGCTGCTTG TERM 3045 2942162 - 2942148 - R 75 -8.6 -3.86015 | opp_overlap 2942148 GACTGGGGTGACAAA TCTGCT GGG AGCAGA TTTGAACGCTGCTTG YPK_2672 2944111 - 2942264 - | hypothetical protein YPK_2673 2945226 - 2944132 - | hemagluttinin domain-containing protein TERM 3046 2944187 - 2944166 - G 81 -12.3 -3.0264 | overlap 2944156 AAACCCGCTGCAACA CCGACACCG CCTT CAGTGTCGG CAGAAACATTGACTC TERM 3047 2944872 - 2944897 + g 75 -6.1 -4.49958 | opp_overlap 2944874, overlap 2944875 CAACACCCGCTTTAA CACCGGTTATC TGGC GATCACCGATG TTTATTTCATCAGAT TERM 3048 2945500 - 2945470 - R 100 -15.6 -3.57263 | opp_overlap 2945470 ATTTTTATTTCTAAA TGAATACCACGCCC TAT GGACGTAGTATTCA TTTAGAAATAAAAAG TERM 3049 2945470 - 2945500 + r 83 -11.2 -3.57144 | opp_overlap 2945470 ATTTTTATTTCTAAA TGAATACCACGCCC TAT GGACGTAGTATTCA TTTAGAAATAAAAAG YPK_2674 2946582 - 2945545 - | L-asparaginase, type II TERM 3050 2947364 - 2947351 - g 81 -8.1 -4.62069 | GCGTTATGTGAAAAA CCGCA TTAT TGCGG AGTCCATCAGCTTGC YPK_2675 2946731 - 2948497 + | hypothetical protein YPK_2676 2949194 - 2950051 + | formate/nitrite transporter TERM 3051 2950529 - 2950515 - g 77 -2.8 -5.1925 | overlap 2950507 CCACAACTGAAAAAA GTCTTC ACC GAATAC CGTAAAACACATAAC YPK_2677 2950107 - 2952389 + | formate acetyltransferase TERM 3052 2952423 - 2952443 + T 100 -13.3 -4.3255 | opp_overlap 2952423 TGTTACAACATGAAA GGCTCCACA TAT TGTGGGGCC TTTATTCATTCAGAG TERM 3053 2952443 - 2952423 - T 90 -11.1 -3.97088 | opp_overlap 2952423 TGTTACAACATGAAA GGCTCCACA TAT TGTGGGGCC TTTATTCATTCAGAG YPK_2678 2953181 - 2952507 - | glycosyl transferase family protein YPK_2679 2954105 - 2954902 + | pyruvate formate-lyase activating enzyme TERM 3054 2954976 - 2955014 + T 83 -11.2 -3.43033 | gap 3, opp_overlap 2954979 2954980, overlap 2954980 TTAGGTTTGGCCTAA CAACTGCCGCCATGCTGGA TGAA TCC-GC-TGGCGGC-GTTG TCTTATATATTGATA TERM 3055 2954980 - 2955011 + T 81 -9.5 -3.83668 | gap 2, opp_overlap 2954979 2954980, overlap 2954976 GTTTGGCCTAACAAC TGCCGCCATGCTGGA TGAA TCC-GC-TGGCGGCG TTGTCTTATATATTG YPK_2680 2956204 - 2955056 - | major facilitator transporter TERM 3056 2956392 - 2956370 - R 95 -4.9 -5.76633 | gap 1, opp_overlap 2956375, overlap 2956375 GGATACACAAAAAAA GAAAAGCGCC CGTA GACGCTTT-C GAAATAGCAGATAAC TERM 3057 2956388 - 2956375 - R 95 -5.9 -5.61277 | opp_overlap 2956375, overlap 2956370 CACAAAAAAAGAAAA GCGCC CGTA GACGC TTTCGAAATAGCAGA YPK_2681 2957735 - 2956443 - | seryl-tRNA synthetase TERM 3058 2957225 - 2957237 + g 74 -9.1 -3.72576 | GAGCACGGTGCATAC GGGCA ATT TGCCC TTTCATCACCACAAA TERM 3059 2957301 - 2957291 - G 71 -8.2 -3.71672 | opp_overlap 2957290 2957291 CGGCAGCAAAATCAA GGCC ACC GGCC ATTTCGCCCAGAGAA TERM 3060 2957964 - 2957988 + G 85 -9.9 -4.39828 | opp_overlap 2957953 2957952 2957976 TAATGCTAACCTTAC CGCAACCGCAA AGC TAGCGGTAGCG TTTTATCGGGCTATT YPK_2682 2957887 - 2958021 + | hypothetical protein YPK_2683 2959311 - 2957977 - | ATPase central domain-containing protein TERM 3061 2958326 - 2958309 - G 74 -6.3 -4.44046 | CGCAGGCTAAATAAA CAATTGC CTGG GCAATCG CCCGCTCCCCTTCGG TERM 3062 2959273 - 2959256 - G 79 -10.5 -3.6715 | opp_overlap 2959254 TGATCCAACGTCAAA GGCCGCA TACG CGCGGCC AGTGGTTGAAACTCA YPK_2684 2959939 - 2959331 - | outer membrane lipoprotein carrier protein LolA YPK_2685 2964061 - 2960129 - | cell divisionFtsK/SpoIIIE TERM 3063 2962076 - 2962057 - G 83 -10 -4.14004 | opp_overlap 2962069 CAACATAAGGAGAAA GCGTGAAC AGAG GCTCACGC GGGCTGTCATCGACT TERM 3064 2962397 - 2962367 - G 71 -9.1 -3.57144 | gap 1, opp_overlap 2962384 2962386, overlap 2962368 2962383 TTGCTGATCGGCAAA CGCTTTGC-GCAAG ATAG CCTGCTGCAAAGCA GCATCTTCATCAGAT TERM 3065 2962386 - 2962400 + g 70 -10 -3.15346 | opp_overlap 2962368 2962367 2962383, overlap 2962384 2962399 TTGCGCAAGATAGCC TGCTGC AAA GCAGCA TCTTCATCAGATGTT TERM 3066 2962560 - 2962591 + g 71 -5 -4.54026 | opp_overlap 2962558, overlap 2962564 2962579 GTTGGAATACGAACC GGATTTGGCCGTGG CAAT TCAGGGCCAATACC TTGTTTTATTTGGGA TERM 3067 2962579 - 2962594 + g 70 -2.5 -4.87133 | opp_overlap 2962558, overlap 2962564 2962560 TTGGCCGTGGCAATT CAGGG CCAATA CCTTG TTTTATTTGGGAGCT TERM 3068 2963304 - 2963269 - G 71 -3.9 -4.77165 | GGGCTGAGAACAAAA CGTCATCATCGCCAT GGGCTA ACGCCGATGAGGCCG CAACACCCGCCCCCA TERM 3069 2964126 - 2964100 - R 100 -15.2 -3.14463 | opp_overlap 2964096, overlap 2964103 AACGGGTCTGAGCAA CAACGCCGAGAA GCC TCCCCGGCGTTG AAACTGTATGAATAA TERM 3070 2964123 - 2964103 - R 84 -11.1 -3.71848 | opp_overlap 2964096, overlap 2964100 GGGTCTGAGCAACAA CGCCGAGAA GCC TCCCCGGCG TTGAAACTGTATGAA YPK_2686 2964678 - 2964184 - | AsnC family transcriptional regulator TERM 3071 2965359 - 2965379 + H 90 -4 -5.59357 | opp_overlap 2965359 CCTATCAAAAAAATT GCTAACAA CATTT TTGTTTGC TTTTTTTAATGTCAT YPK_2687 2965446 - 2966408 + | thioredoxin reductase TERM 3072 2966466 - 2966490 + F 100 -9.2 -5.53079 | overlap 2966467 TTCACCTCGTTCTAT ACGGGTGGCT ACATG GGCCACCCGC TTTTTTATCTGTTTT TERM 3073 2966467 - 2966489 + F 100 -12.7 -3.88187 | overlap 2966466 TCACCTCGTTCTATA CGGGTGGCT ACATG GGCCACCCG CTTTTTTATCTGTTT TERM 3074 2966927 - 2966916 - g 88 -7.2 -5.04249 | overlap 2966918 GGCTGAAAAAACAAA GCGC CCCC GCGC AACGTTGGCTCCGCC TERM 3075 2967714 - 2967735 + G 79 -3.7 -5.19212 | gap 1, overlap 2967715 2967715 TTGGTAGCTATGGCC TCGGCGTAAC GCT GTT-TGCCGG TTTTTTGGTGCTAAT TERM 3076 2968467 - 2968445 - g 74 -9 -3.72893 | CAGTTGGTGATGAAA GCGCTGGAGG AGG CCTCCCGTGC GCAGTCTACCCTGCT YPK_2688 2966867 - 2968633 + | cysteine ABC transporter permease/ATP-binding protein YPK_2689 2968636 - 2970360 + | cysteine ABC transporter permease/ATP-binding protein YPK_2690 2970579 - 2971289 + | leucyltransferase YPK_2691 2971455 - 2971673 + | translation initiation factor IF-1 TERM 3077 2971732 - 2971757 + T 100 -13.3 -4.36778 | overlap 2971749 GTAGTCCCCCTCCGG CGCCCTTCCCA TTTA TGGCAAGGGCG TTTTGCGTTATCTTT TERM 3078 2971945 - 2971972 + T 100 -11.4 -4.7261 | gap 1, opp_overlap 2971945 CGTTGGCAATAAAAA GGGCGATACGCTG TTT TAGC-TATCGCCC TTTATTTTACTGGAT TERM 3079 2971972 - 2971945 - T 100 -10.7 -5.06414 | gap 1, opp_overlap 2971945 CGTTGGCAATAAAAA GGGCGATACGCT GTTTT AGC-TATCGCCC TTTATTTTACTGGAT YPK_2692 2974347 - 2972071 - | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 3080 2974366 - 2974378 + r 71 -4.8 -4.58395 | CACCTCCCAATAATT GCCT TAATC AGGC TTTTTCCAGCGTACA YPK_2693 2974693 - 2974373 - | ATP-dependent Clp protease adaptor protein ClpS TERM 3081 2974615 - 2974638 + g 78 -6 -4.73432 | gap 1, opp_overlap 2974615 2974620 GTATCACTTTATACA TCGAAGGCGGT TGA AGCGCCT-CGA TTTGTTTATCTTTGA TERM 3082 2975087 - 2975101 + G 80 -8.6 -4.44046 | opp_overlap 2975086 2975087 AAATGGTTCAACAAC GCCAAA GGT TTTGGC TTTATTTGCCCTGAG YPK_2694 2975054 - 2975317 + | cold-shock DNA-binding domain-containing protein TERM 3083 2975420 - 2975453 + T 100 -11.2 -4.63007 | opp_overlap 2975426, overlap 2975426 TACCTGTACTTTGAT TCAAAATGCCAGTC AATGAC GACTGGCATTTTTA TTTTATCTACTTCTA TERM 3084 2975447 - 2975426 - T 93 -10.9 -4.18494 | opp_overlap 2975426 2975420 TACTTTGATTCAAAA TGCCAGTCA ATGA CGACTGGCA TTTTTATTTTATCTA TERM 3085 2975426 - 2975447 + T 100 -10.2 -5.58522 | opp_overlap 2975426, overlap 2975420 TACTTTGATTCAAAA TGCCAGTC AATGAC GACTGGCA TTTTTATTTTATCTA YPK_2695 2977547 - 2975598 - | ABC transporter related TERM 3086 2977312 - 2977288 - G 70 -2 -4.83677 | overlap 2977289 AAAATAAAACCAAAA TGTTCACGGC GCAGT GCCGCCAACG CATCGTCATCCAACT YPK_2696 2978659 - 2977547 - | RND family efflux transporter MFP subunit YPK_2697 2978896 - 2979843 + | hypothetical protein YPK_2698 2979987 - 2979871 - | hypothetical protein YPK_2699 2981647 - 2979980 - | hypothetical protein TERM 3087 2980235 - 2980218 - G 77 -2.6 -5.24129 | GCGCGGTATAAAAAA TGCTCC ATATCG GGTGCA GGCAAAATTGTTAGG TERM 3088 2980798 - 2980810 + g 83 -9.1 -4.42238 | GGGCATGAGGATCGA GGCTC AGT GAGCC TTTTGCTTGCAATAA TERM 3089 2981322 - 2981336 + g 78 -5.7 -4.72201 | opp_overlap 2981322 ACTCGATAGTAGATA CGATG TAACC CATCG TTATTTTTTATCCAC YPK_2700 2982000 - 2982896 + | protein of unknown function DUF340 membrane TERM 3090 2982926 - 2982938 + F 76 -6.9 -4.41494 | overlap 2982920 CCAGTCGCCCCCCCC GCCCT CTG GGGGC TTTTCCTTCCCGATA TERM 3091 2983290 - 2983302 + G 73 -3.3 -4.83615 | overlap 2983286 CCAAATTGACAGCTT TGCCC CCA GAGCA TTTTTCTCAACGCTG TERM 3092 2984183 - 2984216 + G 81 -9.5 -4.07568 | GAATGGCGGGCTTCC CCTACAGTGAACTGG AACA CCTGATCACTGTCGG TTTTGGCCGCCAGAC YPK_2701 2983096 - 2984748 + | hybrid cluster protein TERM 3093 2984763 - 2984797 + F 76 -10 -3.39288 | overlap 2984761 2984793 AGTTAATTATACCTT GCCTGGTCAATCGC CTTTCTC GCCGTTGACCGGGC TATTATTGCACGCTG TERM 3094 2985728 - 2985744 + G 70 -7.9 -3.94409 | AATACCGGTTATGGC CGCCTGC CGC GCGGGTG TTTGTGGCTCATGTA YPK_2702 2984862 - 2985884 + | ferredoxin TERM 3095 2987557 - 2987572 + G 71 -9 -3.58343 | opp_overlap 2987568 CTCTGAGTTAAATGC GGCACT GGAA AGTGCC TTTGCACATCCTGGC YPK_2703 2986028 - 2987749 + | thiamine pyrophosphate binding domain-containing protein TERM 3096 2988043 - 2988017 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 2988026, overlap 2988018 2988033 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3097 2988044 - 2988018 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 2988026, overlap 2988017 2988033 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_2704 2988052 - 2988159 + | hypothetical protein YPK_2705 2988156 - 2989211 + | threonine aldolase YPK_2706 2989208 - 2990698 + | NAD-dependent epimerase/dehydratase TERM 3098 2990991 - 2990981 - g 71 -6.8 -4.2349 | TCCTCACAGGCAAAA GCCA TGC TGGC GGATGTCGATACGCT YPK_2707 2990798 - 2991805 + | NAD-dependent epimerase/dehydratase YPK_2708 2991902 - 2992477 + | putative lipoprotein YPK_2709 2992647 - 2993207 + | chorismate mutase TERM 3099 2993238 - 2993266 + F 78 -8.8 -3.89354 | GGCCACACATCTTTC GTACCGGGTTCC TTCCC GTGGCCCGGTAC TTATTGATTTACAAA YPK_2710 2993451 - 2994230 + | ABC transporter related YPK_2711 2994251 - 2994982 + | cationic amino acid ABC transporter, periplasmic binding protein TERM 3100 2995013 - 2995048 + G 82 -10.4 -3.89346 | gap 1, opp_overlap 2995019, overlap 2995014 ATGAATTTCAACCTT TAGCAAGTGCCGCCGGT ATG ACCGTCGGC-CTTGCCG TTTGTGCACTGGCAC TERM 3101 2995014 - 2995047 + G 78 -11.7 -2.93393 | gap 1, opp_overlap 2995019, overlap 2995013 TGAATTTCAACCTTT AGCAAGTGCCGCCGGT ATG ACCGTCGGC-CTTGCC GTTTGTGCACTGGCA YPK_2712 2994994 - 2995710 + | polar amino acid ABC transporter, inner membrane subunit YPK_2713 2995710 - 2996378 + | polar amino acid ABC transporter, inner membrane subunit TERM 3102 2996405 - 2996439 + G 100 -12.2 -4.63218 | opp_overlap 2996404 2996403 CCTTATGCGACAACG CCGGATCATCAACCAG AAA TTGCGTGATGATCCGG TTTTCTTAACGCCCC YPK_2714 2996394 - 2996558 + | hypothetical protein YPK_2715 2997428 - 2996583 - | hypothetical protein YPK_2716 2998795 - 2997425 - | hypothetical protein YPK_2717 2999585 - 2998788 - | hypothetical protein YPK_2718 3000358 - 2999573 - | ABC transporter related TERM 3103 2999636 - 2999646 + g 71 -8.2 -3.70919 | CAATAAGTAGCGATA GCCC AAA GGGC TTGTTCCACTTTCGA YPK_2719 3001413 - 3000355 - | transport system permease protein YPK_2720 3002504 - 3001413 - | periplasmic binding protein TERM 3104 3001567 - 3001556 - G 71 -3 -4.89393 | CAAACTGCACAAAAA TGTA GTCG TACA ACGTGCGAACGCCGC TERM 3105 3001593 - 3001606 + g 71 -4.5 -4.49556 | GCCGCCATGATAGAG CGCGT AAAA ACGTG TTTGTTTAATCGCGG TERM 3106 3001811 - 3001795 - G 91 -13.7 -3.32844 | opp_overlap 3001788 3001786 GCGCGCAGTGGAGAA GGCGTGG TGA CCACGCC TGTCGCGATATTGTT TERM 3107 3002909 - 3002874 - R 100 -11.8 -5.35459 | opp_overlap 3002870 ACAGATGATAAAAAA GCCCACTACACCACGA ATCT CCATGGGGAAGTGGGC TTCAGATTTATTGAT YPK_2721 3003864 - 3002938 - | band 7 protein TERM 3108 3004233 - 3004217 - R 71 -6.7 -4.21974 | overlap 3004200 3004199 TTATCATTTAACAAA TGATAAT AAA ATTATCA CCATGCTAATACCAG YPK_2722 3004435 - 3004205 - | hypothetical protein YPK_2723 3004563 - 3004447 - | hypothetical protein YPK_2724 3004683 - 3005414 + | cationic amino acid ABC transporter, periplasmic binding protein YPK_2725 3006671 - 3005541 - | 23S rRNA (uracil-5-)-methyltransferase RumB TERM 3109 3006086 - 3006098 + g 74 -9.1 -3.67597 | opp_overlap 3006081, overlap 3006083 CCTGATTAAACCGCT CAGGC AGG GCCTG TTGTTCGGTCAGCGG TERM 3110 3006652 - 3006637 - G 82 -10.4 -3.83226 | opp_overlap 3006635 AACCACTGACAAGAA CGGCAG CGAC CTGCCG CATACTGTGCGCAAT YPK_2726 3007219 - 3006755 - | hypothetical protein TERM 3111 3007310 - 3007287 - R 100 -15.4 -3.30124 | overlap 3007290 TGTTATCTCTCACAA TAACGCCGCT CTAA AGCGGCGTTA AAGGAGACGAAAGAC TERM 3112 3007307 - 3007290 - R 100 -12.7 -3.7941 | overlap 3007287 TATCTCTCACAATAA CGCCGCT CTAA AGCGGCG TTAAAGGAGACGAAA YPK_2727 3008189 - 3007344 - | ornithine carbamoyltransferase YPK_2728 3009151 - 3008186 - | binding-protein-dependent transport systems inner membrane component YPK_2729 3010309 - 3009176 - | spermidine/putrescine ABC transporter ATPase subunit YPK_2730 3011589 - 3010480 - | extracellular solute-binding protein TERM 3113 3010510 - 3010525 + g 71 -10.4 -2.75577 | overlap 3010507 3010506 AACTTTTGTCCAGGC CCGGGT GATG ACCCGG TCAATTTTCGGATCC TERM 3114 3010968 - 3010958 - G 71 -6.8 -4.25458 | opp_overlap 3010963 AACTTCAGCAATAAA TCCG TCG CGGA GCCCGTGTAATCGGC TERM 3115 3011247 - 3011260 + g 70 -2.3 -4.98857 | opp_overlap 3011248, overlap 3011248 TGACCAGCGCCAGTA ACTCG GGGT CGAGA TTTTTCTCATTCGGT TERM 3116 3012048 - 3012012 - R 71 -5 -4.74013 | gap 1, opp_overlap 3012014 3012015 3012017, overlap 3012014 3012015 CGTAAATAGAGAAAA TAG-CCGCGTGCCGCTG ATAT CTGCGGCACACTGTCTT TATTCGGACACGTTC TERM 3117 3012045 - 3012014 - R 74 -7.8 -3.97364 | opp_overlap 3012014 3012015 3012017, overlap 3012012 3012015 TAAATAGAGAAAATA GCCGCGTGCCGCTG ATAT CTGCGGCACACTGT CTTTATTCGGACACG TERM 3118 3012044 - 3012015 - R 83 -11.3 -2.96792 | opp_overlap 3012015 3012014 3012017, overlap 3012014 3012012 AAATAGAGAAAATAG CCGCGTGCCGCTG ATAT CTGCGGCACACTG TCTTTATTCGGACAC TERM 3119 3012015 - 3012044 + r 75 -9.1 -3.6761 | opp_overlap 3012014 3012012 3012015, overlap 3012014 3012017 AAATAGAGAAAATAG CCGCGTGCCGCTG ATAT CTGCGGCACACTG TCTTTATTCGGACAC TERM 3120 3012017 - 3012042 + r 80 -10.3 -3.41738 | opp_overlap 3012015 3012014 3012012, overlap 3012015 3012014 ATAGAGAAAATAGCC GCGTGCCGCTG ATAT CTGCGGCACAC TGTCTTTATTCGGAC YPK_2731 3012592 - 3012107 - | hypothetical protein TERM 3121 3012685 - 3012711 + r 76 -9.5 -3.41013 | TCCCGACTAATTTGA TATCTGGGCCG TTCCT CGGCTTAGATA TTCTCAATGTGCTTA YPK_2732 3013048 - 3012734 - | hypothetical protein TERM 3122 3013675 - 3013662 - g 80 -4.5 -5.03314 | overlap 3013673 3013674 CTGATCTGGAAAAAA CGGTC GGTA AACCG GTTGAAACCGTGCCA YPK_2733 3013511 - 3013774 + | GrxA family glutaredoxin TERM 3123 3013815 - 3013831 + F 100 -12.3 -4.70887 | opp_overlap 3013815 GCATTTATCCGATAA GGGTGTC CAA GACACCC TTTCTTTATTGCTGG TERM 3124 3013831 - 3013815 - f 95 -12.3 -3.33492 | opp_overlap 3013815 GCATTTATCCGATAA GGGTGTC CAA GACACCC TTTCTTTATTGCTGG YPK_2734 3014184 - 3015872 + | YidE/YbjL duplication TERM 3125 3016914 - 3016902 - g 76 -9.1 -3.90744 | opp_overlap 3016902 GTTTCGGTCAAATAA TGCGC GGG GCGCA TTTTCTTACTCATAA TERM 3126 3016902 - 3016914 + G 100 -9.1 -4.73613 | opp_overlap 3016902 GTTTCGGTCAAATAA TGCGC GGG GCGCA TTTTCTTACTCATAA YPK_2735 3016205 - 3017020 + | membrane protein YPK_2736 3017020 - 3017625 + | undecaprenyl-diphosphatase TERM 3127 3017651 - 3017675 + F 100 -15.1 -2.91264 | GTATTCGCTTCACAC TTGCCGGTTAG TCT CTGACCGGCAA TCTCTCCATGCGCCC YPK_2737 3017883 - 3018554 + | deoxyribose-phosphate aldolase TERM 3128 3018695 - 3018722 + F 88 -9.2 -4.36554 | ATTTTGTCAGTAGTC TGAGCCCGGT CCACAATT ACCGGGCTTA TTTATTATCGTACTG YPK_2738 3018784 - 3019548 + | DeoR family transcriptional regulator TERM 3129 3019708 - 3019721 + F 70 -3.9 -4.83615 | opp_overlap 3019708 CGCTATGTTGGCAAA TAATC CATA GATTA TTTTTATACAGAATC TERM 3130 3021405 - 3021426 + G 79 -9.5 -3.82486 | opp_overlap 3021407 GAGCTTTGCCCACAT CATGATGGT TATC ACCGTCATG TTCTTCGTCTTCAGT TERM 3131 3021752 - 3021738 - g 74 -10 -3.59979 | TGTCGCGACCTTAAA CCCAAG TAT CTTGGG GATGATCGAAACATT YPK_2739 3020635 - 3021936 + | serine transporter TERM 3132 3021989 - 3022021 + T 90 -5.6 -5.54403 | gap 1, overlap 3021991 CGTTTGATTAACCGC T-CCAGGCTGGCC ACTTCCAC GGCCAGCCTGTTA TTTTTCTTCTTTTTT TERM 3133 3021991 - 3022018 + T 100 -14.2 -4.74161 | overlap 3021989 TTTGATTAACCGCTC CAGGCTGGCC ACTTCCAC GGCCAGCCTG TTATTTTTCTTCTTT TERM 3134 3022259 - 3022240 - T 88 -10 -4.15543 | opp_overlap 3022240 GAAACATCCTGAAAA GCGCGATA GTCA CATCGCGC TTTCTATTTATGTTA TERM 3135 3022240 - 3022259 + T 95 -9.3 -4.45693 | opp_overlap 3022240 GAAACATCCTGAAAA GCGCGAT AGTCAC ATCGCGC TTTCTATTTATGTTA YPK_2740 3023615 - 3022410 - | Serine-type D-Ala-D-Ala carboxypeptidase TERM 3136 3022872 - 3022846 - G 87 -10.9 -4.08887 | opp_overlap 3022858 ACCACGGAAATCAAA CGCATCGGC CCATCTGTC GCCGATGCG ACCAAATTATACCCC YPK_2741 3024621 - 3023950 - | binding-protein-dependent transport systems inner membrane component TERM 3137 3024419 - 3024407 - G 73 -5.5 -4.55625 | AGTAACACCACAAAA GGCAT TGA ACGCC CCACATTGACCAGTG YPK_2742 3025604 - 3024618 - | ABC transporter related TERM 3138 3024701 - 3024676 - G 71 -9.1 -3.54307 | gap 1 AACACTTCGGCTAAA TTCAACCCGCCC TCT GGACG-GTTGAA ATCAACGTGCAAGCG TERM 3139 3025141 - 3025125 - G 73 -10.1 -3.15013 | opp_overlap 3025124, overlap 3025123 3025121 ATCTGATAACAGATA TGACGGC TTA GCCGCCA ATGCTCTGGCGATCC YPK_2743 3026425 - 3025601 - | NLPA lipoprotein YPK_2744 3027651 - 3026584 - | 2OG-Fe(II) oxygenase TERM 3140 3026762 - 3026737 - GR 80 -10.5 -3.494 | CAATGCGGCAGATAA TGGATACAGTG GCAC CACCGCATCCA AACGCGCACCTAAAA TERM 3141 3027229 - 3027260 + gr 72 -7.2 -3.99324 | CCATTGGTTCGGGCC TTGCAGCCGTGTCC AACT GGGTGCGCCTGCGA TTTGTGGTAATGGGG YPK_2745 3027736 - 3027614 - | hypothetical protein TERM 3142 3028512 - 3028524 + G 75 -10.5 -3.37622 | CGCGAAACACTTTGC CGCCG ATA CGGCG TTATCAATCGGTGTT YPK_2746 3028138 - 3028800 + | HAD family hydrolase YPK_2747 3028933 - 3029553 + | glutathione S-transferase domain-containing protein TERM 3143 3029648 - 3029598 - T 88 -9.3 -4.2558 | gap 1, overlap 3029599 CATTGCTGATCAAAA TCCCGAATCACTTACTTATT-TTA AAGT CAACAACCAGTAAGTGATTCGGGT AAGTGCGCGCAGCTA TERM 3144 3029647 - 3029599 - T 95 -12.8 -3.15027 | gap 1, overlap 3029598 ATTGCTGATCAAAAT CCCGAATCACTTACTTATT-TTA AAGT CAACAACCAGTAAGTGATTCGGG TAAGTGCGCGCAGCT YPK_2748 3031698 - 3029701 - | TonB-dependent receptor TERM 3145 3030265 - 3030253 - G 71 -9.1 -3.494 | opp_overlap 3030256, overlap 3030256 GAAGTCGGTATAGAA CAGCG TCA CGCTG GCGTTCATCCCTTCC TERM 3146 3030355 - 3030369 + g 71 -7 -4.07568 | opp_overlap 3030354 3030355, overlap 3030356 ATTACCCAGAATAAG TGCGGG AAG CCCGCC TTTTCCCCCACCAGA TERM 3147 3030356 - 3030368 + g 72 -10.5 -3.04398 | opp_overlap 3030354 3030355, overlap 3030355 TTACCCAGAATAAGT GCGGG AAG CCCGC CTTTTCCCCCACCAG TERM 3148 3030832 - 3030815 - G 72 -5.7 -4.3534 | opp_overlap 3030827, overlap 3030827 GTTGAATTACCAAAA TCATAAT AACC ATTATGA GTAACCGCATAATTA TERM 3149 3030894 - 3030910 + g 74 -2.9 -5.1523 | CGTTTAATGCCAGTG TTCGTCC TGG GGTTGAA TTTTTATCTTGTACA YPK_2749 3032746 - 3031958 - | ABC transporter related YPK_2750 3033825 - 3032743 - | transport system permease protein TERM 3150 3032926 - 3032912 - G 83 -6.4 -4.8622 | overlap 3032913 GCTGGTAAGTAAAAA CGGTGA TCT TCACCA AAAATCATGCGTGCG YPK_2751 3035169 - 3034000 - | periplasmic binding protein TERM 3151 3035209 - 3035195 - R 70 -5.8 -4.26832 | overlap 3035203 TAACAATAAAGCAAA TGATAA TAC TTATCA ATAAGATTGCCATAA TERM 3152 3035351 - 3035312 - R 89 -11.6 -3.51924 | gap 1, opp_overlap 3035314 3035322 TGTTCACGGATAGAA TG-CGCTAATACCAGCACA TTT CGTACTGGTATTGGCGTCA GTTACCGCTAATTTA TERM 3153 3035314 - 3035348 + r 91 -13.7 -2.53382 | opp_overlap 3035312, overlap 3035322 TTCACGGATAGAATG CGCTAATACCAGCAC ATTTC GTACTGGTATTGGCG TCAGTTACCGCTAAT TERM 3154 3035400 - 3035381 - R 100 -12.2 -4.01902 | opp_overlap 3035381 ATAGGCACTAAAGAA GGGCGATA GCGT TATCGCCC TTTCATCCGCACGTT TERM 3155 3035381 - 3035400 + r 93 -12.2 -3.73072 | opp_overlap 3035381 ATAGGCACTAAAGAA GGGCGATA GCGT TATCGCCC TTTCATCCGCACGTT YPK_2752 3036942 - 3035431 - | amino acid permease-associated region TERM 3156 3036027 - 3036011 - G 73 -8.7 -3.79419 | opp_overlap 3036010 3036011 CCCGCCGATAAAACA GCGGTCA AAA TAACCGC ATTCATCACTGCCGC YPK_2753 3037198 - 3037052 - | hypothetical protein YPK_2754 3038072 - 3037200 - | LysR family transcriptional regulator TERM 3157 3037346 - 3037313 - G 91 -13.3 -3.44334 | gap 1, opp_overlap 3037323, overlap 3037327 GTAAAGGAATATTAA GCTCGACCAACTCACC GCT GGCGAGTTGATC-AGC AATCACTCGCCGCGA YPK_2755 3038730 - 3039818 + | hypothetical protein TERM 3158 3039882 - 3039905 + F 100 -13.2 -3.75332 | overlap 3039885 CTAAAACAAACCGTT TAAGGGCCGT ATCC GCGGCCCTTA TTTCCCTTCACCGCT TERM 3159 3039885 - 3039902 + F 89 -10.5 -4.0098 | overlap 3039882 AAACAAACCGTTTAA GGGCCGT ATCC GCGGCCC TTATTTCCCTTCACC TERM 3160 3040506 - 3040496 - g 88 -8.2 -4.67608 | opp_overlap 3040495 3040496 GAGTGGAAGATAAAA GCCG CGT CGGC GTCTGTATTGATACC YPK_2756 3039982 - 3040839 + | apurinic endonuclease Apn1 TERM 3161 3040873 - 3040849 - T 100 -11.4 -4.4715 | overlap 3040851 TTGTAACGTAGAAAA TGCCCGCCAG TAAAC CTGGCGGGAA TTGAACCTGACGGGA TERM 3162 3040871 - 3040851 - T 93 -14 -2.56203 | overlap 3040849 GTAACGTAGAAAATG CCCGCCAG TAAAC CTGGCGGG AATTGAACCTGACGG YPK_2757 3043397 - 3040926 - | fimbrial biogenesis outer membrane usher protein TERM 3163 3042709 - 3042697 - G 75 -3.3 -5.00884 | overlap 3042698 ATGCTGTCGAAAAAA TCACC TGG GGTGT AACTCTCCCCTAAGG YPK_2758 3044302 - 3043481 - | pili assembly chaperone TERM 3164 3043599 - 3043587 - G 74 -4.1 -4.90079 | ACCGGAATAATAAAA TCCCT AGA AGAGA ATGGCGGAACATAGC TERM 3165 3043601 - 3043619 + g 91 -3.8 -5.68438 | ATCCCTAGAAGAGAA TGGCGG AACATAG CTGCCA TTTTTTATTTCATCC TERM 3166 3044363 - 3044329 - R 95 -14 -2.84192 | opp_overlap 3044321 CACATTATCATGATA TTTTATTGTGAATTTT AAA AAAACTCACAATAAAA CATCAATAACAAAAA TERM 3167 3044420 - 3044379 - R 89 -6.7 -5.31855 | opp_overlap 3044382 3044383 3044385, overlap 3044381 3044383 CATCAATAACAAAAA CATACATAGAACATGACAG CAAG CCATCATGTTCTATGATTA CTCGTTATTTAAAAT TERM 3168 3044417 - 3044381 - R 86 -9 -4.27297 | gap 1, opp_overlap 3044382 3044383 3044385, overlap 3044379 3044383 TCAATAACAAAAACA TACATAGAACATGACAG CAAG CCATCATGTTCTATG-A TTACTCGTTATTTAA TERM 3169 3044383 - 3044416 + r 71 -9.7 -2.60492 | opp_overlap 3044383 3044381 3044379, overlap 3044382 3044385 AATAACAAAAACATA CATAGAACATGACAG CAAG CCATCATGTTCTATG ATTACTCGTTATTTA TERM 3170 3044416 - 3044383 - R 100 -14.1 -3.70836 | opp_overlap 3044382 3044383 3044385, overlap 3044381 3044379 AATAACAAAAACATA CATAGAACATGACAG CAAG CCATCATGTTCTATG ATTACTCGTTATTTA YPK_2759 3044905 - 3044429 - | pH 6 antigen precursor (antigen 4) (adhesin) YPK_2760 3045938 - 3045450 - | hypothetical protein TERM 3171 3045548 - 3045576 + g 80 -4.5 -5.08831 | opp_overlap 3045547, overlap 3045550 3045560 TGACATCAATAAAGC CTCTGTCACCATT AAA AAAGGTGACAACG TTATTTTTTTTATTA YPK_2761 3046579 - 3045935 - | transcriptional regulator, CadC TERM 3172 3046148 - 3046127 - G 80 -6.7 -4.77036 | TCCTACCATGAAAAA TATGATGAT GATG ACCATCATA ATAGCGATAAAAAAG TERM 3173 3046718 - 3046741 + r 71 -8.4 -3.53224 | opp_overlap 3046716 3046727, overlap 3046716 GCACAAGATTAAGTC TTATTAAGAT TATT ATCTTAATAA TTTAACAAAAAAATA TERM 3174 3046820 - 3046845 + r 100 -13.4 -3.58343 | opp_overlap 3046820 AACACCCATAAAAAA TGCCAGTCAG AATTAA CTGACTGGCA TTTCAGACTGCTGAC TERM 3175 3046845 - 3046820 - R 100 -13.4 -5.30686 | opp_overlap 3046820 AACACCCATAAAAAA TGCCAGTCAG AATTAA CTGACTGGCA TTTCAGACTGCTGAC YPK_2762 3048604 - 3046904 - | PTS system, fructose subfamily, IIC subunit YPK_2763 3049557 - 3048619 - | 1-phosphofructokinase TERM 3176 3049440 - 3049460 + g 77 -6.8 -4.59853 | CGTTGATCCCTTTAC CCGCCG CATGCAGAC CGGCGG TTTTTACCAGATTGA YPK_2764 3050687 - 3049554 - | HPr family phosphocarrier protein YPK_2765 3050949 - 3051404 + | NUDIX hydrolase YPK_2766 3052535 - 3051537 - | monosaccharide-transporting ATPase TERM 3177 3051744 - 3051713 - G 78 -5.8 -4.72272 | gap 1 CGTGCCCACCAAAAA CACTGACGCCGCCGA TAA TGGGC-GCGGCAATG GCGTAGAGCAAGTAG TERM 3178 3051824 - 3051810 - G 75 -3.5 -5.08601 | gap 1 CGATGCCAACAAAAA GCCAGC AAGT GC-GGC AAGGAACCCTGAAAT TERM 3179 3052165 - 3052133 - G 78 -12.2 -2.65264 | CTATCAGCGAGACCA TTTTCAATCGGGTG ATACA CACCCCATTGAAAA AACCAATAAATGTGC YPK_2767 3054145 - 3052571 - | ABC transporter related TERM 3180 3053078 - 3053091 + g 73 -8.1 -4.07687 | opp_overlap 3053078 AATGCCAATATTGAA GGCCA TGCG TGGCC TTTTCGGCAGAGCCT YPK_2768 3055342 - 3054254 - | ABC transporter, periplasmic sugar-binding protein YPK_2769 3056224 - 3055514 - | ribose 5-phosphate isomerase YPK_2770 3057779 - 3056244 - | xylulokinase TERM 3181 3056344 - 3056330 - G 70 -10 -3.14132 | overlap 3056333 3056334 GTTGGGCCTCAGCAA CAACCG CCG CGGTTG CGGGATTGGGGGGTT TERM 3182 3057254 - 3057239 - G 71 -6.8 -4.24204 | gap 1, overlap 3057240 CACGTACATCGAAAA GCC-CGG TCC CCGAGGC ATCCGAAACTTCAGT YPK_2771 3059279 - 3057783 - | aldehyde dehydrogenase TERM 3183 3059087 - 3059077 - G 77 -8.2 -4.2828 | overlap 3059078 GCCCAGGCAGGAAAA GCGC GAC GCGC CGCAGCAACCGCCTC YPK_2772 3059631 - 3060773 + | hypothetical protein TERM 3184 3061695 - 3061727 + G 72 -11.1 -2.52464 | opp_overlap 3061687 CTGAAGAGGCCCTAC GGGGACTGCGCGGTG AGC CACTGCGCTGCCCAC TGACTTAAGGAGAAG YPK_2773 3060785 - 3061735 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 3185 3061901 - 3061923 + G 72 -11.3 -2.62613 | overlap 3061900 3061898 AGGGCTGGCGGCAAC CGGTGCGGA AGTGA TCTGCACCG ATATTTCACGTGAAC YPK_2774 3061746 - 3062561 + | short-chain dehydrogenase/reductase SDR YPK_2775 3062884 - 3062630 - | hypothetical protein TERM 3186 3063246 - 3063227 - H 76 -7.8 -4.22375 | opp_overlap 3063231 ACTTAATATAAAGAA GTTACCCG CAGC CGGGTATC TCAGGAGCAATAGAT YPK_2776 3063260 - 3064504 + | aromatic amino acid transporter YPK_2777 3064608 - 3065180 + | elongation factor P-like protein YeiP TERM 3187 3065264 - 3065294 + T 100 -14 -3.69482 | opp_overlap 3065273, overlap 3065265 CTATTGGGTCTCTCT ACGTTAAGAGCCGG AAA CCGGCCCTTAACGG TTATCTCTTCACTGA TERM 3188 3065265 - 3065293 + T 100 -17.5 -2.81207 | opp_overlap 3065273, overlap 3065264 TATTGGGTCTCTCTA CGTTAAGAGCCGG AAA CCGGCCCTTAACG GTTATCTCTTCACTG TERM 3189 3065285 - 3065273 - T 76 -10.5 -3.05844 | opp_overlap 3065265 3065264 CTCTCTACGTTAAGA GCCGG AAA CCGGC CCTTAACGGTTATCT YPK_2778 3066513 - 3065320 - | mannonate dehydratase TERM 3190 3065573 - 3065585 + g 86 -7.7 -4.83759 | CCTTGCAAATGCCCC CCTTC ATG GAAGG TTTTTGGATTTCCTT TERM 3191 3066569 - 3066551 - H 71 -3.2 -5.00467 | opp_overlap 3066563, overlap 3066543 GCAACAATAATAAAA TTAACC CGCTAAC GGTTAA AGCCGCCTTTTTCTG TERM 3192 3066832 - 3066844 + H 75 -3.4 -5.23292 | opp_overlap 3066832 CGAATATTATCAATA TTGG ACTTA CCAA TTTTATTTTCTGTCA TERM 3193 3067829 - 3067846 + G 71 -6.9 -4.2123 | GTCGCAGACTCTTGT GGGATCG CCTG CGAACCC TTTATTCAGTGGGTC YPK_2779 3067079 - 3068551 + | mannitol dehydrogenase domain-containing protein TERM 3194 3068560 - 3068594 + T 89 -11.6 -3.4314 | opp_overlap 3068558 3068561, overlap 3068558 3068561 GGCTTAAGACACACG ACGATGAGCTGAAT CAAGGCT ATTCAGCTCATCGG TATTGTTGGCGTTTA TERM 3195 3068561 - 3068593 + T 100 -15.1 -2.65161 | opp_overlap 3068561 3068558, overlap 3068560 3068558 GCTTAAGACACACGA CGATGAGCTGAAT CAAGGCT ATTCAGCTCATCG GTATTGTTGGCGTTT TERM 3196 3068593 - 3068561 - T 100 -15.1 -2.75975 | opp_overlap 3068560 3068558 3068561, overlap 3068558 GCTTAAGACACACGA CGATGAGCTGAAT CAAGGCT ATTCAGCTCATCG GTATTGTTGGCGTTT YPK_2780 3069423 - 3068680 - | GntR domain-containing protein TERM 3197 3069566 - 3069538 - R 100 -15.5 -3.89524 | overlap 3069562 ACTTCAGGTGATAAA TCACGGTTTATCA CGT CGATAAACCGTGA TGCCCGAACATGTTG YPK_2781 3069915 - 3069589 - | hypothetical protein TERM 3198 3070762 - 3070743 - g 73 -4.9 -4.68705 | overlap 3070732 3070729 ACAATGGCAACAAAA GCAGCCA TTATCG CGGCCGC TGTATCATAGCGAAT YPK_2782 3070231 - 3071214 + | cobalamin synthesis protein P47K TERM 3199 3071205 - 3071224 + F 89 -3.5 -5.62288 | opp_overlap 3071194 3071205 AATTCGTTTACGTAA CGGGG TATGATGTCT CCCCG TTTTTATTTTCTTCC YPK_2783 3071273 - 3071974 + | phosphoesterase PA-phosphatase related TERM 3200 3072586 - 3072534 - g 76 -9.1 -3.82865 | opp_overlap 3072532 TAAATAATACGCAAA CTGAGATGCGTGCAGTTAATGACAA AGA TGGGCTTTTACTGCAAGCCTCTCAG GATGAATTCGAAGCG TERM 3201 3072804 - 3072794 - g 71 -6.8 -4.1552 | opp_overlap 3072794 GATCTCGGCAAGAAA GTCC AGC GGAC TAAATTACGTCCAGG YPK_2784 3072416 - 3073000 + | NLP/P60 protein TERM 3202 3073047 - 3073063 + F 100 -8.7 -5.4833 | opp_overlap 3073047 AACCAAACGTTGAAA CGCTGTT TAT GACAGCG TTTTTTATTGGCTCA TERM 3203 3073063 - 3073047 - f 70 -8 -3.65084 | opp_overlap 3073047 AACCAAACGTTGAAA CGCTGT TTATG ACAGCG TTTTTTATTGGCTCA YPK_2785 3073586 - 3075166 + | diguanylate phosphodiesterase TERM 3204 3075861 - 3075845 - g 72 -10.9 -2.7362 | overlap 3075844 TGGAAAGATCATAAG CTGAGTG ACC CACTCAG TACCCCTCCAGTCGC YPK_2786 3075248 - 3077056 + | extracellular solute-binding protein TERM 3205 3077562 - 3077543 - g 100 -10.7 -5.60993 | opp_overlap 3077542 CTGGGGATAAAAAAA GCGGTGC GCAATG GCACCGC CTTCGATACCTGGAG YPK_2787 3077066 - 3078166 + | binding-protein-dependent transport systems inner membrane component YPK_2788 3078166 - 3079194 + | binding-protein-dependent transport systems inner membrane component TERM 3206 3080129 - 3080109 - g 75 -6.1 -4.58663 | opp_overlap 3080128 ACTATGCGCTAAAAA GCCTCAGTT TTG ACCTGAAGC CCGGCGAAAGTCTGG YPK_2789 3079196 - 3080788 + | ABC transporter related TERM 3207 3080833 - 3080812 - T 82 -5.8 -4.9792 | TAGCCTAGACAAAAA TGCCCGCG ATAGCA CACGGACA AACAGCTAAAAAGTA YPK_2790 3081193 - 3080849 - | hypothetical protein TERM 3208 3081431 - 3081446 + H 95 -7.6 -5.00412 | CAGAAGCTGTAGATT TGGGAT TCAG ATCCCA TTTTTCGTTATATTT YPK_2791 3082066 - 3082215 + | hypothetical protein YPK_2792 3083395 - 3082190 - | Bcr/CflA subfamily drug resistance transporter TERM 3209 3082489 - 3082472 - G 71 -9.1 -3.44622 | TACGCCCAGAACTAA GGCCCAG AATC CTAGGCC AGCGACACAAACCAC YPK_2793 3084206 - 3083499 - | pseudouridine synthase TERM 3210 3084782 - 3084792 + G 71 -6.8 -4.17048 | CGAGAAGCGGTCGAT GCCA CGG TGGC TTATTTTCGACGCCA TERM 3211 3085050 - 3085069 + G 75 -5.8 -4.59027 | gap 1, overlap 3085053 CGGTGGCCCGTAATC TGCCGCTAT TTG ATAGCG-CA TTTTCTCTGCTGATT YPK_2794 3084740 - 3086497 + | type III restriction protein res subunit YPK_2795 3086659 - 3086943 + | ribosomal protein L25 TERM 3212 3086976 - 3087005 + T 100 -18.1 -3.07816 | opp_overlap 3086976 3086983, overlap 3086983 TTCGGGACGCCGAAA TAAAAAACGCCGC TGAT GCGGCGTTTTTTA TTGGCTAAATACGCA TERM 3213 3087005 - 3086976 - T 100 -18.1 -3.57144 | opp_overlap 3086976 3086983, overlap 3086983 TTCGGGACGCCGAAA TAAAAAACGCCGC TGAT GCGGCGTTTTTTA TTGGCTAAATACGCA TERM 3214 3086998 - 3086983 - T 100 -11.8 -5.63517 | opp_overlap 3086983 3086976, overlap 3086976 CGCCGAAATAAAAAA CGCCGC TGAT GCGGCG TTTTTTATTGGCTAA TERM 3215 3086983 - 3086998 + T 100 -11.8 -5.4833 | opp_overlap 3086976 3086983, overlap 3086976 CGCCGAAATAAAAAA CGCCGC TGAT GCGGCG TTTTTTATTGGCTAA YPK_2796 3088035 - 3087031 - | 37kDa nucleoid-associated protein YPK_2797 3088213 - 3088440 + | hypothetical protein TERM 3216 3088866 - 3088900 + G 73 -3.7 -4.91109 | gap 1 AACAGAGTTGGCACG TGACTGGCAGCTGA TGTTTATT TCAG-TGCCGGTTA TTTTTCTGATCGAGA YPK_2798 3088468 - 3090264 + | sulfatase TERM 3217 3090453 - 3090486 + F 100 -13.3 -3.91144 | opp_overlap 3090451 3090461, overlap 3090456 3090461 GCCGACCAAATACCT CAACAAAACCAATCC ATTC GGGTTGGTTTTGTCG TTTGTGGAGTGTGGC TERM 3218 3090456 - 3090483 + F 100 -13.6 -3.02186 | opp_overlap 3090451 3090461, overlap 3090453 3090461 GACCAAATACCTCAA CAAAACCAATCC ATTC GGGTTGGTTTTG TCGTTTGTGGAGTGT TERM 3219 3090461 - 3090478 + F 86 -7.7 -4.64846 | opp_overlap 3090461 3090451, overlap 3090456 3090453 AATACCTCAACAAAA CCAATCC ATTC GGGTTGG TTTTGTCGTTTGTGG TERM 3220 3090478 - 3090461 - f 73 -5.5 -4.6759 | opp_overlap 3090456 3090453 3090461, overlap 3090451 AATACCTCAACAAAA CCAATCC ATTC GGGTTGG TTTTGTCGTTTGTGG TERM 3221 3090549 - 3090533 - f 72 -9.4 -3.17051 | overlap 3090531 TTGGGATGAGCAAGA GTGCCG GGATG CGGCAC AGCATAATTTCAATG TERM 3222 3090980 - 3091017 + F 87 -8.6 -4.5464 | overlap 3090981 TCACATGCGAGGTTT TTATGTTGGTTCAGTT AGTTCA ATCTGAACCAACATAC TTTTGCTTATATATA TERM 3223 3090981 - 3091016 + F 89 -12.1 -3.317 | overlap 3090980 CACATGCGAGGTTTT TATGTTGGTTCAGTT AGTTCA ATCTGAACCAACATA CTTTTGCTTATATAT YPK_2800 3091235 - 3092311 + | hypothetical protein YPK_2801 3092313 - 3092570 + | hypothetical protein YPK_2802 3092599 - 3092883 + | colicin D YPK_2803 3093040 - 3093132 + | hypothetical protein TERM 3224 3093706 - 3093721 + G 72 -6.2 -4.34402 | opp_overlap 3093705 TTAAATTAAAAACTG GGATAA TAGG TTATCC TTTTGATATGAAAGA YPK_2804 3093468 - 3093830 + | hypothetical protein TERM 3225 3093910 - 3093889 - T 100 -12.3 -4.8143 | opp_overlap 3093888 3093887 GTAACAAGGTAAAAA CCGCTCACC AAAG GGTGAACGG CCTTCTTGAATTCAA YPK_2805 3095392 - 3093956 - | glycoside hydrolase family protein TERM 3226 3094033 - 3094046 + g 77 -4.5 -4.84359 | AACGCGCCATTGTAC CGGTG CCAT CATCG TTTTTATCGACATAA YPK_2806 3095514 - 3095389 - | hypothetical protein YPK_2807 3096423 - 3095683 - | RpiR family transcriptional regulator TERM 3227 3096873 - 3096849 - R 75 -7.2 -4.33621 | gap 1, opp_overlap 3096853, overlap 3096851 3096853 CAGTGAATTAATAAA TATACCGGGCA ATTA CGCCCGGT-TA GCTATTTACTATTCT TERM 3228 3096872 - 3096851 - R 72 -7.9 -3.7642 | opp_overlap 3096853, overlap 3096849 3096853 GTGAATTAATAAATA TACCGGGCA ATTA CGCCCGGTT AGCTATTTACTATTC TERM 3229 3096870 - 3096853 - R 80 -10.5 -3.45532 | opp_overlap 3096853, overlap 3096851 3096849 GAATTAATAAATATA CCGGGCA ATTA CGCCCGG TTAGCTATTTACTAT TERM 3230 3096853 - 3096870 + r 76 -9.8 -3.25881 | opp_overlap 3096851 3096849 3096853 GAATTAATAAATATA CCGGGC AATTAC GCCCGG TTAGCTATTTACTAT YPK_2808 3097301 - 3096882 - | tail assembly chaperone gp38 YPK_2809 3098019 - 3097303 - | putative bacteriophage tail fiber protein TERM 3231 3097947 - 3097975 + g 70 -9.5 -3.25942 | opp_overlap 3097929 3097970, overlap 3097946 3097953 TGGGTGGAACGCCAC CGGCGACGTTGCC GTC GGTAAATTCGCCG TTACTGTCGGCGCGT YPK_2810 3098718 - 3098116 - | putative bacteriophage protein GP48 YPK_2811 3099851 - 3098715 - | baseplate J family protein YPK_2812 3100310 - 3099855 - | GP46 family protein YPK_2813 3100903 - 3100307 - | phage baseplate assembly protein V TERM 3232 3100838 - 3100827 - G 71 -7.2 -4.07568 | overlap 3100828 TTGCTGTCGTCAAAA GCGG TCAC CCGC CCGATCCCCAGCAGC YPK_2814 3101974 - 3100919 - | Mu P family protein YPK_2815 3103377 - 3101971 - | DNA circulation family protein TERM 3233 3103432 - 3103419 - R 100 -9.5 -5.4387 | ACAGAAAGTAAAAAA CCCGC TGGA GCGGG TTCGAGGTTATTGAC TERM 3234 3103512 - 3103538 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 3103501, overlap 3103513 ACATCCATGTAGGCT CGAGCCGCGCCA TCCC TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3235 3103513 - 3103539 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 3103501, overlap 3103512 CATCCATGTAGGCTC GAG-CCGCGCCA TCCC TGGCGCGGACGC TTTACTCCTCTGCCT YPK_2816 3105137 - 3103644 - | hypothetical protein YPK_2817 3105557 - 3105258 - | putative bacteriophage protein TERM 3236 3105474 - 3105492 + g 91 -13.2 -3.38316 | AGGTTCGCTGAGTTC GACCACCT CAT AGGTGGTC TTGCTTGCGTCGTGA YPK_2818 3105927 - 3105559 - | hypothetical protein TERM 3237 3105900 - 3105910 + g 71 -8.2 -3.64103 | TGACATACGCCGTAC CCGC CAG GCGG TTTGAAGTATCGCTC YPK_2819 3107457 - 3105949 - | Mu tail sheath family protein TERM 3238 3107126 - 3107112 - G 73 -7.8 -4.06633 | TATAAAGTGAAATAA CACCGG TCT CCGATG CCGCCGTATTGATGG YPK_2820 3107648 - 3107454 - | putative bacteriophage protein YPK_2821 3108270 - 3107653 - | hypothetical protein YPK_2822 3108606 - 3108316 - | hypothetical protein TERM 3239 3108762 - 3108746 - R 100 -5.7 -5.85737 | opp_overlap 3108746 3108745 3108753 ACAGCAATAAAAAAA CCCCGAC GAT GCTGGGG CTTCTTATTGTTTAC TERM 3240 3108914 - 3108901 - R 100 -8.1 -6.04953 | ATAGAAACAAAAAAA CCTGC CACA GCAGG AAGTTAATCGGTCTT TERM 3241 3109242 - 3109216 - R 100 -8.1 -5.30189 | gap 1, overlap 3109220 TATAAGATGAAAAAA GACA-GCCACAC CGAA GTGTGGCCTATC ACAGTTAGCTATACA TERM 3242 3109237 - 3109220 - R 90 -11.3 -3.7035 | overlap 3109216 AGATGAAAAAAGACA GCCACAC CGAA GTGTGGC CTATCACAGTTAGCT YPK_2823 3110065 - 3109271 - | hydroxypyruvate isomerase YPK_2824 3110853 - 3110041 - | DeoR family transcriptional regulator YPK_2825 3111587 - 3110856 - | class II aldolase/adducin family protein YPK_2826 3112888 - 3111584 - | type III effector Hrp-dependent outers TERM 3243 3113011 - 3113023 + r 74 -4.9 -4.8743 | opp_overlap 3113005, overlap 3113016 TCAATTTAACTTAAT GTTAT TAA ATAAC TTTATTTATTTTAGA YPK_2827 3113578 - 3113099 - | antitermination Q family protein YPK_2828 3113749 - 3113889 + | hypothetical protein YPK_2829 3113852 - 3114574 + | XRE family transcriptional regulator YPK_2830 3114780 - 3115022 + | DinI family protein TERM 3244 3115099 - 3115109 + F 84 -2.6 -5.66989 | opp_overlap 3115099, overlap 3115104 TCAATGAGAAATTAA TTTT TTT AAAA TTTTTTTAATCTTTA YPK_2831 3115194 - 3116129 + | plasminogen activator Pla YPK_2832 3116262 - 3116101 - | hypothetical protein YPK_2833 3116566 - 3118353 + | methyl-accepting chemotaxis sensory transducer with Cache sensor YPK_2834 3119416 - 3118427 - | beta-lactamase domain-containing protein TERM 3245 3119675 - 3119688 + H 77 -3.9 -5.16841 | opp_overlap 3119679, overlap 3119676 3119679 GCGTCTTCCTCTCAA TTGAT GTAT ATCAA TTTTTATTGATATAC TERM 3246 3119679 - 3119704 + H 76 -10.7 -2.71325 | opp_overlap 3119679, overlap 3119675 3119676 CTTCCTCTCAATTGA TGTATATCAAT TTTT ATTGATATACA TGGCTTTCTACGTCG TERM 3247 3119704 - 3119679 - H 76 -10.7 -2.52464 | opp_overlap 3119675 3119679 3119676 CTTCCTCTCAATTGA TGTATATCAAT TTTT ATTGATATACA TGGCTTTCTACGTCG TERM 3248 3121221 - 3121211 - g 80 -6.8 -4.7373 | overlap 3121212 TGAGCGTATTAAAAA TGGC GGT GCCA TGGCAGATATCCCCG YPK_2835 3119832 - 3121358 + | putative transport protein TERM 3249 3121377 - 3121411 + F 93 -13.6 -2.65388 | opp_overlap 3121363 3121383, overlap 3121383 ATTTCTGGTCGTGAC CACAAACCGCACCGGT CCC GCCAGTGCGGTTTTTG CTTCTCCCTTCCCTG TERM 3250 3121383 - 3121405 + F 100 -11.2 -4.93968 | opp_overlap 3121383, overlap 3121377 GGTCGTGACCACAAA CCGCACCGGT CCC GCCAGTGCGG TTTTTGCTTCTCCCT TERM 3251 3121405 - 3121383 - f 100 -12.7 -3.96148 | opp_overlap 3121377 3121383 GGTCGTGACCACAAA CCGCACCGG TCCCG CCAGTGCGG TTTTTGCTTCTCCCT TERM 3252 3122044 - 3122005 - g 79 -2.3 -5.41143 | gap 3, opp_overlap 3122017, overlap 3122007 3122017 GACCCGTTAAAAAAA TATGCACCG-AA-AGGGGTC AAC GTCCCCTCTTACAGTGC-TA AGCAACCTATTAGGC TERM 3253 3122141 - 3122123 - g 71 -3.1 -5.00616 | gap 1 GCGGCCCGCAAAAAA GACC-GGT GTTT ACCTGGCC GACCAAAGATAATCG TERM 3254 3122657 - 3122645 - g 80 -4.7 -5.1101 | opp_overlap 3122645 3122645 GCATTATGCAAAAAA CCGGC GGT GGCGG TGGATTTATTACTTA YPK_2836 3121633 - 3122799 + | beta-lactamase TERM 3255 3122902 - 3122890 - T 77 -10.5 -3.22858 | overlap 3122882 3122888 GTAATGAGAGCAATA GCCCG CAC CGGGC ACATGCTGGATAAGC TERM 3256 3122978 - 3122954 - T 100 -13 -5.10154 | opp_overlap 3122954 AGGGAAAAGCAAAAA CCCGTTATCT TATTC AGATAACGGG TTTTTAATTGGTGCC TERM 3257 3122954 - 3122978 + T 100 -13 -4.90266 | opp_overlap 3122954 AGGGAAAAGCAAAAA CCCGTTATCT TATTC AGATAACGGG TTTTTAATTGGTGCC YPK_2837 3123887 - 3123426 - | hypothetical protein TERM 3258 3123877 - 3123867 - G 71 -6.8 -4.13945 | opp_overlap 3123866 ACTTTCATGTGAAAA CGGT GGC ACCG GTAACTTCATGGATA TERM 3259 3123949 - 3123896 - H 87 -8.6 -4.42653 | opp_overlap 3123912 3123948, overlap 3123897 3123898 3123919 3123923 ACTTCATGGATAAAA TCCTC-AGTATTTATTTGAGTAGACA GATC TGTCTACTCAAATAAAT-CTAGCCGA TGTAGACAGATTTGT TERM 3260 3123946 - 3123897 - H 76 -9.8 -3.2511 | gap 2, opp_overlap 3123912, overlap 3123896 3123898 3123919 3123923 CTTCATGGATAAAAT CCTCAGTATTTATTTGAGTAGACA GATC TGTCTACTCAAATAAAT-CT-AGC CGATGTAGACAGATT TERM 3261 3123945 - 3123898 - H 91 -13.3 -2.54745 | gap 2, opp_overlap 3123912, overlap 3123897 3123896 3123919 3123923 TTCATGGATAAAATC CTCAGTATTTATTTGAGTAGACA GATC TGTCTACTCAAATAAAT-CT-AG CCGATGTAGACAGAT TERM 3262 3123912 - 3123970 + H 73 -9.1 -3.55592 | gap 1, opp_overlap 3123898 3123897 3123896 3123919 3123923, overlap 3123948 3123950 CCTCAGTATTTATTT GAGTAGACAGATCTGTCTAC-TCAAATA AATC TAGCCGATGTAGACAGATTTGTCTACAC TCTTTGTGCACTTCT YPK_2838 3124035 - 3124643 + | TetR family transcriptional regulator TERM 3263 3124652 - 3124627 - T 100 -15.5 -3.84674 | opp_overlap 3124631, overlap 3124631 AGTGGATCACAATAA GAAACGCGGCC GAAT GACCGCGTTTC TCTCAGGACTCACGC TERM 3264 3124648 - 3124631 - T 100 -10.5 -4.53419 | opp_overlap 3124631, overlap 3124627 GATCACAATAAGAAA CGCGGCC GAAT GACCGCG TTTCTCTCAGGACTC TERM 3265 3124631 - 3124648 + T 77 -8.3 -4.0371 | opp_overlap 3124627 3124631 GATCACAATAAGAAA CGCGGCC GAAT GACCGCG TTTCTCTCAGGACTC YPK_2839 3125795 - 3124680 - | porin YPK_2840 3126126 - 3125992 - | hypothetical protein TERM 3266 3126179 - 3126193 + H 100 -11.4 -5.626 | TCGTTAATGTTACGA CCGGTC TCT GACCGG TTTTTTTCTCCGGTC YPK_2841 3126899 - 3128053 + | major facilitator transporter TERM 3267 3128850 - 3128838 - g 71 -10.5 -2.75183 | overlap 3128835 AGTGCCACTCAATGA GGGGG CTA CCCCC GAAGATATTGCGGCA TERM 3268 3129247 - 3129233 - g 80 -4.2 -5.31456 | overlap 3129234 TGAATCTACAAAAAA TTGCCA CTA TGGCAG AGCAGCACCACGGTG TERM 3269 3130491 - 3130479 - g 75 -7.7 -4.14193 | AGAAGATGATATAAA CCTCT ATG AGAGG CAACTAAAAACCAGT TERM 3270 3130718 - 3130730 + G 74 -2.7 -5.14563 | opp_overlap 3130715 AGATCGAAAATAGCA TCAGT CAG ATTGA TTTTTTCATCACCAG YPK_2842 3128077 - 3130770 + | multi-sensor signal transduction histidine kinase YPK_2843 3130773 - 3131426 + | two component LuxR family transcriptional regulator TERM 3271 3131450 - 3131476 + T 100 -15.2 -3.83844 | CCGCTCGACTCTCAA GCCCAGTTTTGC TCT GCAATACTGGGC TTATTAATTAATGAA YPK_2844 3134367 - 3131494 - | integral membrane sensor hybrid histidine kinase TERM 3272 3133652 - 3133640 - G 75 -3.3 -5.09762 | overlap 3133642 CGGGAAGAAATAAAA TCCTC CAA GCGGA CACTCTGCTCAAAGC TERM 3273 3134067 - 3134092 + g 81 -6.1 -4.96848 | opp_overlap 3134064, overlap 3134064 3134069 TATTCATAACCATGC CACTAGTGGCA TCTG TGTCACTGGCG TTTTTATCTAGCCGA TERM 3274 3134196 - 3134208 + g 95 -3.3 -5.95166 | TGTTGTTATATTCCT GACGA ATA TCGGC TTTTTTTTCGTTAAG TERM 3275 3134419 - 3134468 + r 81 -5.2 -5.14563 | opp_overlap 3134421, overlap 3134421 CGATAACCGATAAAA AAGCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGCTG TTTTTTAATGACACG TERM 3276 3134466 - 3134421 - R 100 -7.8 -5.3236 | opp_overlap 3134419 3134421 ATAACCGATAAAAAA GCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGC TGTTTTTTAATGACA TERM 3277 3134421 - 3134466 + r 76 -7.8 -4.20707 | opp_overlap 3134421, overlap 3134419 ATAACCGATAAAAAA GCCAGCTCAGT-TGCTTAAC TGATGGGC GTTAAGCTCACTG-GCTGGC TGTTTTTTAATGACA YPK_2845 3134552 - 3134427 - | hypothetical protein TERM 3278 3134541 - 3134518 - G 74 -11 -2.81547 | overlap 3134515 GCCGCAGATGAATGA GCAGGTGCAA TAAA CCGCACCTGC CAGAGCAACATTATT YPK_2846 3137248 - 3134555 - | DNA gyrase, A subunit TERM 3279 3136571 - 3136591 + g 78 -11.9 -3.03771 | opp_overlap 3136569 3136566 CTCTTCAATACCACG GCGGCCATT AAT AATGGCTGC TGTTGGGAAGTCTGG TERM 3280 3136622 - 3136643 + g 72 -5.9 -4.48263 | overlap 3136640 GCCAGGGATATACTC CATCAGC CCTTCAAT GCTGATG TTTTCATCTTCTATA YPK_2847 3137548 - 3138276 + | ubiquinone biosynthesis O-methyltransferase TERM 3281 3138298 - 3138319 + F 81 -10.9 -3.27786 | gap 1, opp_overlap 3138290 3138294 3138291, overlap 3138290 CGTAGAACCCACTGG GAGCAGG-GC TAA GCACCTGCTC TTCCTGGCTTTTCCC TERM 3282 3139661 - 3139678 + G 73 -8.4 -3.7941 | TCACAGGGCGGTGTT CGTGGC GGCGCG GCCACG TTGTTCTACCCAATG TERM 3283 3140466 - 3140485 + G 74 -10.8 -3.03007 | overlap 3140446 AACAAGGCGCTTGCC CGTGGTTT AACG AAACCACG TATTCACAAGGTATT YPK_2848 3138770 - 3141058 + | ribonucleoside-diphosphate reductase, alpha subunit YPK_2849 3141220 - 3142350 + | ribonucleoside-diphosphate reductase YPK_2850 3142354 - 3142611 + | ferredoxin YPK_2851 3142646 - 3143155 + | proteinase inhibitor I11 ecotin TERM 3284 3143187 - 3143166 - T 95 -13 -3.20207 | opp_overlap 3143161 AATAGCACTCATTAA CCAGGCGC TATTCC GCGCCTGG GCTAAATATTAACAT YPK_2852 3144406 - 3143213 - | competence/damage-inducible protein CinA YPK_2853 3145025 - 3146233 + | aromatic amino acid transporter TERM 3285 3146251 - 3146278 + T 100 -15 -4.18018 | gap 1, opp_overlap 3146251 CGTAAGCAATAATAA GGGCGCATATCCT GAT AGGA-ATGCGCCC TTTTCCGTCAGCCCA TERM 3286 3146278 - 3146251 - T 100 -15 -4.0342 | gap 1, opp_overlap 3146251 CGTAAGCAATAATAA GGGCGCATATCCT GAT AGGA-ATGCGCCC TTTTCCGTCAGCCCA YPK_2854 3147032 - 3146490 - | YfaZ family protein TERM 3287 3147667 - 3147652 - g 87 -5.4 -5.42862 | opp_overlap 3147652 AGATCGGTAAAAAAA CAGACA TGTT TGTCCG CTTCTCCACTGTGGC TERM 3288 3148707 - 3148727 + G 73 -9.7 -3.31501 | overlap 3148708 GAGCATCAACGCATG TTCACCCGT ATT GCGGGTGAG TTATCGCAAGTTCCT TERM 3289 3148708 - 3148726 + G 72 -11 -2.58579 | overlap 3148707 AGCATCAACGCATGT TCACCCGT ATT GCGGGTGA GTTATCGCAAGTTCC YPK_2855 3147393 - 3148832 + | catalase TERM 3290 3148854 - 3148896 + T 84 -6.5 -4.93318 | gap 1, overlap 3148856 TCAGCCCCTTTGAAC TGCACC-CCAAATGTTGG ATAACCCC CTGACATTTGGAGGTGTA TTTTTATGGCTTATC TERM 3291 3148856 - 3148894 + T 71 -6.9 -4.07789 | gap 1, overlap 3148854 AGCCCCTTTGAACTG CACC-CCAAATGTTGG ATAACCCC CTGACATTTGGAGGTG TATTTTTATGGCTTA YPK_2856 3151080 - 3148900 - | helicase c2 TERM 3292 3149837 - 3149847 + g 73 -5.4 -4.65895 | CATTTAGAAATCGGC GCAT TCG ATGC TTTTTCCATCGCCGC TERM 3293 3150189 - 3150199 + g 73 -2.4 -5.02476 | GTTCAGGATGGGCGA GCCC AGG GGGA TTTTTTGGCCGGTAT TERM 3294 3151180 - 3151168 - H 74 -7.7 -4.07568 | overlap 3151147 3151170 TCGCTCGCGCTAAAA CACCA GCT TGGTG TTAACCAAAGTAGGA TERM 3295 3152216 - 3152203 - g 73 -5.3 -4.63218 | opp_overlap 3152203 3152212, overlap 3152212 GTTTTGCTAATAAAA CTCAA AACA TTGAG TTAGTGGCTCAATAT YPK_2857 3151350 - 3152465 + | porin TERM 3296 3152529 - 3152546 + F 100 -12.7 -5.0133 | GAATGTATTTATTAT GCCGGGA TTAT TCCCGGC TTTTTTACGCCACTC YPK_2858 3152877 - 3153767 + | hypothetical protein YPK_2859 3153892 - 3154110 + | hypothetical protein YPK_2860 3156534 - 3154228 - | lysine decarboxylase TERM 3297 3154364 - 3154341 - G 74 -11.1 -2.81207 | overlap 3154340 TACTTAAGATATAAC GTAGCCATG GTTCTT CATGGCTAC CAAAACTCTCCCCCG YPK_2861 3157938 - 3156604 - | amino acid permease-associated region TERM 3298 3156907 - 3156891 - G 76 -10.9 -3.13376 | overlap 3156889 3156888 3156884 3156899 AAACGGAAGAAACCA GGCCAAA CTC TTTGGCC GCATTCGGCGAAATA YPK_2862 3159228 - 3158392 - | binding-protein-dependent transport systems inner membrane component YPK_2863 3160163 - 3159225 - | ABC transporter related YPK_2864 3161314 - 3160160 - | binding-protein-dependent transport systems inner membrane component TERM 3299 3161568 - 3161578 + r 71 -4 -4.7497 | overlap 3161551 GGCTGGCTCCCCCAG CTAA TGG TTAG TTTTTAATAAATCCG YPK_2865 3162507 - 3161575 - | substrate-binding region of ABC-type glycine betaine transport system TERM 3300 3162310 - 3162321 + g 72 -5.8 -4.31737 | TACGACTTTGGTTGC TCCC AGTT GGGA TTTATTGGTGGTTTT YPK_2866 3163243 - 3164097 + | rhodanese domain-containing protein TERM 3301 3164123 - 3164105 - T 72 -8.1 -3.83026 | TGGCGTGATACCAAA GGCTGGC TCACC ACCAGCC ACTGACATGACTCAT YPK_2867 3165660 - 3164245 - | aromatic-L-amino-acid decarboxylase YPK_2868 3166541 - 3165684 - | hypothetical protein YPK_2869 3167354 - 3166656 - | urea ABC transporter, ATP-binding protein UrtE TERM 3302 3166793 - 3166779 - G 100 -10 -4.67635 | GGCAAAATCATAAAA CTGCTC CAC GAGCAG GATAGCCATATCCCC TERM 3303 3166971 - 3166957 - G 70 -7.8 -3.89346 | opp_overlap 3166957 3166968 3166970 TGCCCACCGGATAAA TCGCCA CCA CGGCGA TGCTTCATCTCTTGT YPK_2870 3168284 - 3167448 - | urea ABC transporter, ATP-binding protein UrtD YPK_2871 3169357 - 3168281 - | urea ABC transporter, permease protein UrtC TERM 3304 3168385 - 3168368 - G 81 -3.3 -5.46657 | overlap 3168369 CAGGCCAAGAAAAAA TTGCCAG TATT CCGGCAT CGCCATGGTGAACCA YPK_2872 3170958 - 3169357 - | urea ABC transporter, permease protein UrtB TERM 3305 3171022 - 3170991 - R 100 -10.9 -4.57837 | overlap 3170993 ATATGTGGTGAAAAA GAGCTGACGTCAG ATCCCG CTGACATCAGCAC GTCACAGCGATTACC TERM 3306 3171020 - 3170993 - R 100 -12.1 -3.90316 | overlap 3170991 ATGTGGTGAAAAAGA GCTGACGTCAG ATCCCG CTGACATCAGC ACGTCACAGCGATTA YPK_2873 3172350 - 3171082 - | urea ABC transporter, urea binding protein TERM 3307 3172654 - 3172630 - R 72 -6.4 -4.31085 | TATATTAATCTAAAA CAGGCATGGC GGATT ACCACACCTG TTCTTTACTAACAGC YPK_2874 3173292 - 3172819 - | hypothetical protein TERM 3308 3173004 - 3173016 + g 75 -3.3 -5.00884 | overlap 3173005 TGTCTTTCAATTCGA ATGCG ACA CGCAG TTTTTTCAACACAAT TERM 3309 3173369 - 3173354 - R 74 -4 -4.94243 | gap 1, overlap 3173349 3173357 GCAAAAAAACTAAAA GAGCGTC TTT GACG-TC TAGCGGGCAGTATTG YPK_2875 3174418 - 3173537 - | phosphonate ABC transporter, inner membrane subunit TERM 3310 3174343 - 3174365 + g 74 -4 -5.00196 | ATCTGATATAACGTT TCTGCTGCCT GAA AAGCTGCGGA TTTTGTTGTTTCAGC YPK_2876 3175281 - 3174421 - | phosphonate ABC transporter, inner membrane subunit TERM 3311 3175361 - 3175335 - R 75 -5.9 -4.70659 | gap 1, opp_overlap 3175338, overlap 3175338 3175340 TGTTACACCTAAAAA CAATAGCTCCGG CGAA CCAGAGCCA-TG TTGTTTTATCCGTTG TERM 3312 3175359 - 3175338 - R 93 -8.7 -4.46215 | opp_overlap 3175338, overlap 3175335 3175340 TACACCTAAAAACAA TAGCTCCGG CGAA CCAGAGCCA TGTTGTTTTATCCGT TERM 3313 3175357 - 3175340 - R 78 -9.1 -3.82353 | opp_overlap 3175338, overlap 3175338 3175335 CACCTAAAAACAATA GCTCCGG CGAA CCAGAGC CATGTTGTTTTATCC YPK_2877 3176313 - 3175384 - | phosphonate ABC transporter, periplasmic phosphonate binding protein YPK_2878 3177186 - 3176350 - | phosphonate ABC transporter, ATPase subunit TERM 3314 3176553 - 3176563 + g 73 -5.4 -4.62069 | opp_overlap 3176553, overlap 3176542 3176537 3176555 GTAACGTATTCATAA TACG TGT CGTA TTTTTAGGGTCCAAC TERM 3315 3177258 - 3177297 + r 80 -8.7 -3.96298 | opp_overlap 3177269, overlap 3177263 3177269 TATTGATGATAGTTG CATGTGAAAAAGGTGAC AAAATA GCCACCTTTTTCGTGTG TTTAATTAATGACTG TERM 3316 3177286 - 3177269 - R 71 -4.8 -4.62069 | opp_overlap 3177263 3177258 3177269 GTTGCATGTGAAAAA GGTGAC AAAATA GCCACC TTTTTCGTGTGTTTA YPK_2879 3177642 - 3177394 - | transglycosylase-associated protein YPK_2880 3178930 - 3177827 - | hypothetical protein TERM 3317 3178862 - 3178849 - G 73 -2.3 -5.0707 | opp_overlap 3178850 3178856, overlap 3178850 AAATATAAAAATAAA CGACC CTCA GGTCT TGTTGCACGACTGCA TERM 3318 3179147 - 3179133 - H 76 -2.7 -5.34365 | opp_overlap 3179135 3179135 CGATAAGAAGAAAAA CGCGC TAATG GCGTG TTGGCGTTTGAGTAT YPK_2881 3179243 - 3179584 + | HNH endonuclease TERM 3319 3179687 - 3179697 + F 71 -6.8 -4.13995 | opp_overlap 3179686 TATTGGCAAAATCAC GGCA TTC TGCC TTTAATTTATCAAGC TERM 3320 3181270 - 3181298 + G 73 -3.2 -4.87626 | gap 1 CTTTAAACATTTACC TATCGCGGGTGAA TATC TGCACC-GTGATA TTTTTGATATTGCGG YPK_2884 3180359 - 3182071 + | D-lactate dehydrogenase TERM 3321 3182168 - 3182139 - T 100 -13 -3.7791 | opp_overlap 3182139 CAATTAGTCACTAAA GCGGAATTTGCC TCTGCT AGCAAATTCCGC TTCTCAGTCGCGATG TERM 3322 3182139 - 3182168 + T 95 -12.3 -3.35996 | opp_overlap 3182139 CAATTAGTCACTAAA GCGGAATTTGC CTCTGCTA GCAAATTCCGC TTCTCAGTCGCGATG YPK_2885 3183163 - 3182192 - | peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YPK_2886 3183467 - 3183646 + | hypothetical protein YPK_2887 3184664 - 3183720 - | dihydrouridine synthase DuS TERM 3323 3184942 - 3184894 - R 88 -9.8 -4.07687 | gap 1, opp_overlap 3184900, overlap 3184896 AGTCGTGTGGTAAAA TA-CCCATGGGCAATGCCCATTT ATGA AAATGGACATTGCCAAAGAGATA GTCTAAATACGTATT TERM 3324 3184939 - 3184896 - R 100 -14 -3.63744 | opp_overlap 3184900, overlap 3184894 TCGTGTGGTAAAATA CCCATGGGCAATGCCCATTT ATGA AAATGGACATTGCCAAAGAG ATAGTCTAAATACGT TERM 3325 3184900 - 3184912 + r 78 -9.1 -3.87815 | opp_overlap 3184896 3184894 GTGGTAAAATACCCA TGGGC AAT GCCCA TTTATGAAAATGGAC YPK_2888 3185887 - 3184958 - | hypothetical protein TERM 3326 3185614 - 3185636 + g 87 -6.3 -5.02502 | opp_overlap 3185616, overlap 3185616 3185633 AATTCACCGCGTTAA CATCACCAC TTACT GTGGTGATA TTTTTATCTACTATA TERM 3327 3185616 - 3185634 + g 78 -8.9 -4.12748 | opp_overlap 3185616, overlap 3185614 3185633 TTCACCGCGTTAACA TCACCAC TTACT GTGGTGA TATTTTTATCTACTA TERM 3328 3185643 - 3185653 + g 83 -4 -5.44721 | overlap 3185633 GTGGTGATATTTTTA TCTA CTA TAGA TTTTTTTACAGTAAT TERM 3329 3186225 - 3186201 - R 100 -9.9 -4.55697 | opp_overlap 3186204, overlap 3186203 3186204 ATTTTGATAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 3330 3186223 - 3186203 - R 100 -12.5 -3.88703 | opp_overlap 3186204, overlap 3186201 3186204 TTTGATAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3331 3186204 - 3186222 + r 100 -16 -4.8048 | opp_overlap 3186204 3186203 3186201 TTGATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3332 3186222 - 3186204 - R 100 -16 -2.92499 | opp_overlap 3186204, overlap 3186203 3186201 TTGATAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPK_2889 3186761 - 3186303 - | transposase IS200-family protein YPK_2890 3186906 - 3186751 - | hypothetical protein TERM 3333 3186874 - 3186892 + g 100 -16 -4.36914 | opp_overlap 3186874 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3334 3186892 - 3186874 - G 100 -16 -3.07307 | opp_overlap 3186874 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3335 3186912 - 3186929 + r 76 -6.9 -4.431 | opp_overlap 3186912 CTGGGCACAAAAAAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA TERM 3336 3186929 - 3186912 - R 100 -9.1 -5.60993 | opp_overlap 3186912 CTGGGCACAAAAAAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA YPK_2891 3187976 - 3186972 - | helicase domain-containing protein TERM 3337 3188580 - 3188552 - R 100 -9.6 -4.86731 | opp_overlap 3188577 CCCTTCCAAAGAAAA CACCCTGTCAGC TTACC GCTCACAAGGTG GGAGTGACCATCTTA YPK_2892 3188947 - 3188633 - | hypothetical protein YPK_2893 3189198 - 3189031 - | hypothetical protein YPK_2894 3189656 - 3189321 - | hypothetical protein YPK_2895 3189857 - 3189690 - | hypothetical protein YPK_2896 3190664 - 3190431 - | transposase YPK_2897 3190980 - 3190720 - | hypothetical protein TERM 3338 3191030 - 3191002 - R 100 -13.2 -4.86731 | opp_overlap 3191014 CCCTCCCAAAGAAAA CACCCTGTCAGC TTACC GCTCACAGGGTG GGGGTGATCATCTTA TERM 3339 3191050 - 3191067 + r 76 -6.9 -4.431 | opp_overlap 3191050 TGATCATCTTATTAA CCGCCTC CTAA GAAGCGG TTTTATCAGTGAATA YPK_2898 3192465 - 3191110 - | DEAD/DEAH box helicase domain-containing protein YPK_2899 3192856 - 3193566 + | TetR family transcriptional regulator TERM 3340 3194499 - 3194486 - g 71 -4.5 -4.63184 | AATTCACGCCAAAAA CAGTG GAAA CACCG GATTTACGCACCGAC YPK_2900 3193618 - 3194604 + | secretion protein HlyD family protein YPK_2901 3194618 - 3196360 + | ABC transporter related TERM 3341 3197287 - 3197306 + G 73 -5 -4.66609 | gap 1, opp_overlap 3197279, overlap 3197280 3197288 3197290 AATTTAACGCCGCGA TGATCGCGT TGA ACGCGG-CA TTTTTGCCTGCGGTA YPK_2902 3196365 - 3197540 + | ABC-2 type transporter YPK_2903 3197553 - 3198659 + | ABC-2 type transporter YPK_2904 3199024 - 3198698 - | ethyl tert-butyl ether degradation EthD TERM 3342 3199343 - 3199353 + H 90 -4 -5.64274 | opp_overlap 3199343, overlap 3199331 TGTTATTGAGGAAAT CAAT ATG ATTG TTTTTTTATCCATGA YPK_2905 3199594 - 3200505 + | LysR family transcriptional regulator YPK_2906 3201615 - 3200506 - | NADH:flavin oxidoreductase/NADH oxidase YPK_2907 3203327 - 3201963 - | two component, sigma54 specific, Fis family transcriptional regulator YPK_2908 3205128 - 3203314 - | signal transduction histidine kinase, nitrogen specific, NtrB TERM 3343 3204516 - 3204496 - G 77 -4 -5.12474 | opp_overlap 3204496 3204508 GAGAATAGACAAAAA GATAATCG TATTG CGAATATC TTTTGCTTGCATCGC TERM 3344 3205177 - 3205224 + H 100 -17.4 -4.76041 | opp_overlap 3205187 TCAATGAATTGGTGG CGGGTAATTATTACCCAC ATCGCCGCTACC GTGGGTAATAATTACCCG TTTTTACTGAATGTA YPK_2909 3205486 - 3205959 + | hypothetical protein TERM 3345 3206000 - 3205968 - T 73 -5.6 -4.51238 | opp_overlap 3205970, overlap 3205969 3205970 CCGATAAAATAGAAA CTCCCCTGATTAAC ATTTG ATTAATCAGGGGTT ATCTGGAGAGTCTAT TERM 3346 3205999 - 3205969 - T 71 -9.1 -3.29658 | opp_overlap 3205970, overlap 3205968 3205970 CGATAAAATAGAAAC TCCCCTGATTAAC ATTTG ATTAATCAGGGGT TATCTGGAGAGTCTA TERM 3347 3205998 - 3205970 - T 86 -12.6 -2.5671 | opp_overlap 3205970, overlap 3205969 3205968 GATAAAATAGAAACT CCCCTGATTAAC ATTTG ATTAATCAGGGG TTATCTGGAGAGTCT TERM 3348 3205970 - 3205998 + T 91 -11.9 -3.49102 | opp_overlap 3205970 3205969 3205968 GATAAAATAGAAACT CCCCTGATTAA CATTTGA TTAATCAGGGG TTATCTGGAGAGTCT YPK_2910 3207303 - 3206047 - | nucleoside transporter TERM 3349 3206665 - 3206680 + g 77 -4.8 -4.9138 | opp_overlap 3206665 CATGGCAAACAGGAA GAAAAT AGCC ATTTTC TTTTGTTTAAATAAT YPK_2911 3208305 - 3207442 - | xanthosine phosphorylase YPK_2912 3208618 - 3209499 + | hypothetical protein YPK_2913 3210430 - 3209537 - | LysR family transcriptional regulator YPK_2914 3212710 - 3210662 - | choline/carnitine/betaine transporter TERM 3350 3213253 - 3213237 - g 71 -4.4 -4.82901 | opp_overlap 3213251, overlap 3213251 TTTCCGTGACAAAAA TGGCCT GCTAG AAGCCA CAATGAGGTATCTGA YPK_2915 3213130 - 3213672 + | TetR family transcriptional regulator TERM 3351 3213885 - 3213873 - g 75 -10.5 -3.3197 | ACAGGATGTTGATAA GGCGG TAG CCGCC GCCAAACAAGGTCAG YPK_2916 3213730 - 3215202 + | betaine aldehyde dehydrogenase YPK_2917 3215225 - 3216928 + | choline dehydrogenase TERM 3352 3217056 - 3217076 + T 100 -11.9 -3.88498 | opp_overlap 3217056 AAAGAAAAACAAAAA GGACACCAG ATT TTGGTGTCC TTTACTATCTCAAAC TERM 3353 3217076 - 3217056 - T 100 -11.2 -5.77734 | opp_overlap 3217056 AAAGAAAAACAAAAA GGACACCA GATTT TGGTGTCC TTTACTATCTCAAAC YPK_2918 3217849 - 3217139 - | hypothetical protein TERM 3354 3217649 - 3217636 - G 83 -3.8 -5.38549 | overlap 3217639 CGGAAATAACAAAAA CCAG ACCAAG CTGG GCAATAATCAAGCCA YPK_2919 3218447 - 3217992 - | molybdopterin biosynthesis MoaE protein YPK_2920 3218692 - 3218447 - | molybdopterin converting factor, subunit 1 YPK_2921 3219168 - 3218689 - | molybdenum cofactor biosynthesis protein C YPK_2922 3220491 - 3219511 - | molybdenum cofactor biosynthesis protein A YPK_2923 3220743 - 3220889 + | hypothetical protein YPK_2924 3221023 - 3221946 + | protein of unknown function UPF0052 and CofD YPK_2925 3222322 - 3222077 - | hypothetical protein YPK_2926 3224629 - 3222614 - | excinuclease ABC, B subunit TERM 3355 3223337 - 3223395 + g 87 -13.9 -2.51642 | gap 1, opp_overlap 3223332, overlap 3223338 CAGCAAGTCATCCAC TTGTGTGGCTACCGGGCGGACCTCGATC AACG GATCGAG-TAGGCCCGTTGGCCGCACCA CTTGCTCAATAATGT TERM 3356 3224521 - 3224540 + g 73 -7.8 -4.08216 | overlap 3224504 3224502 3224522 CTGTTACGCCTAGCA GGGTCTGG TGTG CCAGACCA TTTTCCAGCCCCTCC TERM 3357 3224522 - 3224539 + g 74 -11.3 -3.04715 | overlap 3224504 3224502 3224521 TGTTACGCCTAGCAG GGTCTGG TGTG CCAGACC ATTTTCCAGCCCCTC TERM 3358 3225949 - 3225926 - g 76 -8.2 -4.09739 | TGAACCCCCGCAAAA CTTGCAACAG CAGC CTGTTGAAAG ACGCAATGCGTTAGG TERM 3359 3226057 - 3226077 + G 73 -4.7 -4.6856 | gap 1, opp_overlap 3226057 CAGGCCGCCACAAAT CCCA-CCC AATTCC GGGCTGGG TTTTTGAGCTATTTC YPK_2927 3225720 - 3226430 + | ABC transporter related YPK_2928 3227357 - 3226620 - | dethiobiotin synthase TERM 3360 3227129 - 3227116 - G 78 -5.3 -5.00616 | opp_overlap 3227116 GTCGCTTCCAAAAAA GTGAA CGGA TTCAC TTGTGAGTAACCGAG YPK_2929 3228138 - 3227335 - | biotin biosynthesis protein BioC TERM 3361 3227611 - 3227600 - G 74 -3 -5.09426 | opp_overlap 3227578 TGCAATGGCAAAAAA TCAT TTAC ATGA CGCTGACCATCCACC TERM 3362 3228053 - 3228017 - G 71 -9.3 -3.53012 | opp_overlap 3228040 GTTTCTCGCTGTAAA TCAGCCGCGCTGTCG TAGCTCT CGGCGGCCCGGCTGA ATGCAGCCGCAATCG YPK_2930 3229273 - 3228122 - | 8-amino-7-oxononanoate synthase YPK_2931 3230310 - 3229273 - | biotin synthase TERM 3363 3231543 - 3231553 + G 74 -6.8 -4.36914 | GTTAATGTCGCCCGC CTGC AAC GCAG TTTTGTCGAACAGGG YPK_2932 3230409 - 3231689 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase YPK_2933 3232879 - 3231875 - | 6-phosphogluconolactonase YPK_2934 3233170 - 3233991 + | Cof-like hydrolase YPK_2935 3235126 - 3234047 - | molybdate ABC transporter, ATPase subunit TERM 3364 3235122 - 3235140 + g 74 -3 -5.01732 | opp_overlap 3235126, overlap 3235123 3235124 3235126 CTGAAATTCAGTTCT AACATGGG GCC CCCATGCG TTTTTTACCCCAATT YPK_2936 3235815 - 3235120 - | molybdate ABC transporter, inner membrane subunit YPK_2937 3236594 - 3235815 - | molybdenum ABC transporter, periplasmic molybdate-binding protein TERM 3365 3236778 - 3236755 - R 89 -7.4 -5.04175 | GGAATGATACAAAAA TGCCCAACGT TTAT ACGCCAGGCA TTCAGAAATCAGAGA YPK_2938 3236981 - 3236829 - | hypothetical protein TERM 3366 3237076 - 3237037 - H 78 -9.6 -3.59279 | gap 1, opp_overlap 3237039 3237052, overlap 3237034 TATCACAATAACCAA CACTGCTGCCTATCATTTA CTG TAAATGATAT-CAGCAATG AATTAACCCTGTTAT YPK_2939 3237283 - 3238074 + | ModE family transcriptional regulator TERM 3367 3238525 - 3238547 + G 78 -11.3 -3.38046 | overlap 3238523 GGCCCGTGACCCGCA GCGCTGTCA ACAAC TGGCAGCGC TATTTGGAATCAGCC TERM 3368 3239253 - 3239268 + G 77 -4 -5.16572 | gap 1, overlap 3239224 3239247 GCACCCGTGTACGTA CCGTGAT TTT ATC-CGG TTTTTTCGATTCGAT YPK_2940 3238184 - 3239674 + | ABC transporter related YPK_2941 3239708 - 3239836 + | hypothetical protein TERM 3369 3239834 - 3239824 - f 78 -2.4 -5.44119 | TTTAGCTCAAAAAAA TGCC TTA GGCT AAACCGTCATTTAGG TERM 3370 3240300 - 3240284 - g 75 -3.6 -5.09426 | TTCAAGGTGAAAAAA CACCCA TCAGT CGGGCG CATGGGTTGGGTTGT YPK_2942 3239891 - 3240709 + | abortive infection protein TERM 3371 3241922 - 3241903 - g 74 -9.2 -3.76224 | opp_overlap 3241908 GCCGCATTCAGTAAA GCCTGTGG TAAA CCACTGGC CTACCATTTTGCCCC YPK_2943 3241069 - 3242085 + | UDP-glucose 4-epimerase YPK_2944 3242095 - 3243147 + | galactose-1-phosphate uridylyltransferase YPK_2945 3243144 - 3244295 + | galactokinase YPK_2946 3244289 - 3245359 + | galactose mutarotase TERM 3372 3245425 - 3245391 - f 70 -7.4 -3.90318 | TGATGACGTTATAAA TGATGTATTACG AATACTCCTGG CGTAATACATCA TGCCGCAACGGCCAC YPK_2947 3245652 - 3245987 + | PsiF repeat-containing protein YPK_2948 3246334 - 3247086 + | phosphoglycerate mutase 1 family protein TERM 3373 3247137 - 3247114 - T 91 -5.3 -5.62219 | gap 1, opp_overlap 3247114 AACACAGTAAAAAAA CCCCGTACAT GAATA ATGC-CGGGG TTTTTTATTGACGGC TERM 3374 3247114 - 3247137 + T 82 -3.1 -5.4505 | gap 1, opp_overlap 3247114 AACACAGTAAAAAAA CCCCGTACAT GAATA ATGC-CGGGG TTTTTTATTGACGGC YPK_2949 3248320 - 3247268 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3375 3247712 - 3247698 - G 72 -5.7 -4.33417 | GTCACCGACAAGAAA CAGTG TGGAG CACTG GCCGCGTTGATCGCA TERM 3376 3247744 - 3247760 + g 83 -8.7 -4.56597 | CAATAGCCACTTTAA TGGTGCC GTC GGTACCA TTTTTAAAACCAACG TERM 3377 3247910 - 3247892 - G 75 -5.2 -4.72333 | opp_overlap 3247893 3247897, overlap 3247893 AATCATATCCAAAAA CTCACCGG CGG CCGGTAAC CCGCTGTCGTTAATT TERM 3378 3247897 - 3247919 + g 71 -9 -3.51411 | opp_overlap 3247893 3247892, overlap 3247893 TATCCAAAAACTCAC CGGCGGCCGG TAA CCCGCTGTCG TTAATTTCGACGAGT YPK_2950 3248735 - 3248610 - | hypothetical protein TERM 3379 3249025 - 3249044 + G 71 -6.4 -4.15044 | gap 1 CTTTTGGCTACCTAC GGCTGACGA CAC TCG-CGGCC TTTGTTAACGCAGCG YPK_2951 3248787 - 3249725 + | cation diffusion facilitator family transporter YPK_2952 3250571 - 3249846 - | nicotinamide mononucleotide transporter PnuC YPK_2953 3251754 - 3250693 - | quinolinate synthetase complex, A subunit TERM 3380 3250975 - 3250959 - G 77 -4.4 -5.02074 | gap 1 GCATCTTGTAAAAAA TGCC-CC GATC GGTGGCA ACAATTAACGTTTTC TERM 3381 3251866 - 3251856 - R 70 -5.4 -4.54026 | opp_overlap 3251862, overlap 3251860 3251862 TCCTAAACAAAATAA CCAA TAT TTGG CAAAAAGTCGCCAAA TERM 3382 3252101 - 3252116 + r 73 -9 -3.5399 | overlap 3252096 ACTCGCCCTTCGGGT CAACGC TGGC GCGTTG TTGTCTCGCTCTGCT TERM 3383 3252268 - 3252283 + r 73 -9 -3.5399 | overlap 3252263 ACTCGCCCTTCGGGT CAACGC TGAC GCGTTG TTGTCTCGCTCTGCT TERM 3384 3252953 - 3252919 - R 100 -14.4 -4.0162 | TCTTCACACGATAAA GCCCAGAAATCAGTCA AAT TGACTAAATCCTGGGC TCAAAAAAGCTAAAG YPK_2954 3253772 - 3252963 - | tol-pal system protein YbgF YPK_2955 3254288 - 3253782 - | peptidoglycan-associated lipoprotein YPK_2956 3255631 - 3254339 - | beta-propeller repeat-containing to-pal system protein TolB YPK_2957 3256932 - 3255751 - | protein TolA TERM 3385 3256069 - 3256093 + g 75 -5.1 -4.70879 | gap 1 GGCAGCAGCGGCACC TGCACCCGAA CCACTC TTCGG-TGCA TTTTTAGCGTTTGCC TERM 3386 3256139 - 3256161 + g 100 -9 -5.46657 | opp_overlap 3256127 3256125, overlap 3256141 3256153 TCATCAACATCCGTT GAGGCAGCCG CTT CTGCTGCCGC TTTTTTCTTGGCCTC TERM 3387 3256141 - 3256159 + g 71 -10.2 -2.91061 | opp_overlap 3256125, overlap 3256139 3256153 ATCAACATCCGTTGA GGCAGCCG CTT CTGCTGCC GCTTTTTTCTTGGCC TERM 3388 3256199 - 3256209 + g 79 -2.4 -5.38047 | GCAGCAACTTTTTTA GCAG CAG CGGC TTTTTTCTCTGCATC TERM 3389 3256316 - 3256335 + g 75 -3.4 -5.15969 | overlap 3256319 GCTTGTTTCTTCGCC GCAGCGGC AACA GCAGCTTC TTTTTTGGCTTCAGC TERM 3390 3256501 - 3256514 + g 74 -3.1 -5.11254 | TTCAGCGGCCTGCTT TTGCT GTTC AGCGA TTTGTTTTTGTTGTT YPK_2958 3257457 - 3257029 - | protein TolR YPK_2959 3258147 - 3257470 - | protein TolQ YPK_2960 3258557 - 3258156 - | tol-pal system-associated acyl-CoA thioesterase TERM 3391 3258669 - 3258642 - R 76 -7 -4.57218 | opp_overlap 3258640, overlap 3258645 3258646 AGAATAGAACGAAAA TAATTATGGGCC GGAT GGCCCATAGGTA GGATTGTGCTCAAGG TERM 3392 3258666 - 3258645 - R 86 -8.7 -4.36586 | opp_overlap 3258640, overlap 3258642 3258646 ATAGAACGAAAATAA TTATGGGCC GGAT GGCCCATAG GTAGGATTGTGCTCA TERM 3393 3258665 - 3258646 - R 86 -12.2 -3.20325 | opp_overlap 3258640, overlap 3258645 3258642 TAGAACGAAAATAAT TATGGGCC GGAT GGCCCATA GGTAGGATTGTGCTC YPK_2961 3259021 - 3258689 - | cyd operon protein YbgE TERM 3394 3258941 - 3258925 - GR 84 -10.8 -3.69323 | opp_overlap 3258925 CGAGCACCAGTGAAA GGGCCC TCAAT GGGCCC TTATCCATTAATTCG TERM 3395 3258925 - 3258941 + gr 83 -10.8 -3.45134 | opp_overlap 3258925 CGAGCACCAGTGAAA GGGCCC TCAAT GGGCCC TTATCCATTAATTCG YPK_2962 3259100 - 3258966 - | cyd operon protein YbgT YPK_2963 3260252 - 3259113 - | cytochrome d ubiquinol oxidase, subunit II TERM 3396 3260108 - 3260127 + g 80 -7.2 -4.60487 | opp_overlap 3260108 CAATCGAGTTAATCA TGATACGG CGCT CTGTATCA TTTTTACCGATGATA YPK_2964 3261835 - 3260267 - | cytochrome bd ubiquinol oxidase subunit I TERM 3397 3261791 - 3261775 - G 78 -5.1 -4.87786 | TTAATGGGACAAAAA GGAAATG GTA CATTGCC GTTAAGGCAAACTGT TERM 3398 3262097 - 3262076 - R 70 -8.1 -3.62046 | opp_overlap 3262076 3262075 GCATTTTGGTAACAA TGTCGTAAA TTGA TCTACGACA ATTTAAGCCTATATG TERM 3399 3262301 - 3262317 + r 70 -3.7 -4.7889 | overlap 3262296 TAAATTCAGAGTGAG TCAAATC ACA GTTTTGA TTTTTACATATTTAT TERM 3400 3262556 - 3262539 - R 100 -12.7 -5.252 | opp_overlap 3262537 CATTTGTATAAAAAA GGCCACC AAAA GGTGGCC AGTATGTCGCGTTAG YPK_2965 3263475 - 3262603 - | succinyl-CoA synthetase, alpha subunit YPK_2966 3264641 - 3263475 - | succinyl-CoA synthetase, beta subunit TERM 3401 3264387 - 3264401 + g 73 -2.1 -5.08824 | overlap 3264388 TCCGTTGGCATCTGT TTGGT AAGTG ACCAG TTTTTTACCTAGCCA TERM 3402 3264669 - 3264682 + r 70 -9.5 -2.81045 | overlap 3264666 ATATAAGGTCTGAGA CGGGC CGAA GCCCG TAGTGTTCTGGATAA YPK_2967 3265977 - 3264754 - | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YPK_2968 3268814 - 3266007 - | 2-oxoglutarate dehydrogenase, E1 subunit TERM 3403 3267135 - 3267152 + g 76 -8.3 -4.08919 | AGAGCTGATCCGACG CGCCAGC TCTT GCAGGCG TTTCATTTCAACTTT TERM 3404 3268255 - 3268271 + g 82 -5.1 -5.12971 | opp_overlap 3268253 3268255, overlap 3268259 ACAACCGATTCAATA CGCTG CTGAATC CAGCG TTTTTCTTCGGTGTT TERM 3405 3268755 - 3268728 - G 80 -6.4 -4.68994 | gap 1, opp_overlap 3268728, overlap 3268730 AGGATCAGTTAAAAA GTC-TTCATAGAG CTG CTCTATGTAGGAC TGGTTCGCGCCCGCC TERM 3406 3268907 - 3268921 + r 70 -7.1 -3.75378 | AAACGGTTCACTCGA CGTGC TCAAT GCACG TTCTGTTATGGACCT TERM 3407 3269010 - 3269031 + r 84 -11.6 -3.16683 | opp_overlap 3269010 CCTACCGTGAAGCTA CCCGGAGA ATCCCC TCTCCGGG TTAATAAACTCACAT TERM 3408 3269031 - 3269010 - R 86 -12.3 -2.53263 | opp_overlap 3269010 CCTACCGTGAAGCTA CCCGGAGAA TCCC CTCTCCGGG TTAATAAACTCACAT YPK_2969 3269886 - 3269170 - | succinate dehydrogenase and fumarate reductase iron-sulfur protein YPK_2970 3271702 - 3269936 - | succinate dehydrogenase, flavoprotein subunit TERM 3409 3270981 - 3270950 - G 79 -11.6 -3.18264 | gap 1, opp_overlap 3270977 3270978, overlap 3270952 GCCTTCAGTCACTAA TACACCCGCACCGGC AAT ACCGGT-CGGGTGGA ACTGCCACATTTCCA TERM 3410 3270979 - 3270952 - G 90 -14.2 -3.1552 | gap 1, opp_overlap 3270977 3270978, overlap 3270950 CTTCAGTCACTAATA CACCCGCACCGGC AAT ACCGGT-CGGGTG GAACTGCCACATTTC YPK_2971 3272050 - 3271703 - | succinate dehydrogenase, hydrophobic membrane anchor protein YPK_2972 3272433 - 3272044 - | succinate dehydrogenase, cytochrome b556 subunit TERM 3411 3273327 - 3273309 - g 70 -2.5 -4.8622 | gap 1 CCTGCGAATCAAAAA TCACCTAT ATTG AT-GGTGA TCAGGGTATTTTGCT YPK_2973 3273143 - 3274423 + | citrate synthase I TERM 3412 3274484 - 3274453 - T 79 -10.9 -3.09823 | opp_overlap 3274458, overlap 3274448 3274458 CCGCGTAAAATTAGA GCAAAGTCCCGGC TAGGAG GCCAGGACTTTGT TAGCAATTTGAGGCA TERM 3413 3274458 - 3274479 + T 76 -7.9 -4.19371 | opp_overlap 3274453 3274448 3274458 TAAAATTAGAGCAAA GTCCCGGCT AGGA GGCCAGGAC TTTGTTAGCAATTTG TERM 3414 3274479 - 3274458 - T 83 -9.4 -3.92694 | opp_overlap 3274458, overlap 3274453 3274448 TAAAATTAGAGCAAA GTCCCGGC TAGGAG GCCAGGAC TTTGTTAGCAATTTG TERM 3415 3274496 - 3274512 + T 85 -9.4 -4.19238 | TTGTTAGCAATTTGA GGCACC GTTGA GGTGCC TTTTAACGTTAGAGC YPK_2974 3275109 - 3274531 - | GrpE protein YPK_2975 3275347 - 3276114 + | ATP-NAD/AcoX kinase YPK_2976 3276201 - 3277862 + | DNA repair protein RecN TERM 3416 3278248 - 3278232 - g 74 -3 -5.14563 | CTGGTCACGAAAAAA TAACGC AACAA ACGTTA ACGTTGACCTTTGAT YPK_2977 3277976 - 3278317 + | SmpA/OmlA domain-containing protein TERM 3417 3278448 - 3278470 + T 78 -4.1 -5.1101 | opp_overlap 3278449, overlap 3278449 3278452 GAGTGACAACAAAAA ATAAGGCGC TGATT GTGCCTTAC TTTTTTGCCTGCTCA TERM 3418 3278469 - 3278449 - T 87 -5.4 -5.56673 | opp_overlap 3278448 3278449 3278452 AGTGACAACAAAAAA TAAGGCGC TGATT GTGCCTTA CTTTTTTGCCTGCTC TERM 3419 3278449 - 3278469 + T 70 -7.6 -3.65883 | opp_overlap 3278449, overlap 3278448 3278452 AGTGACAACAAAAAA TAAGGCGC TGATT GTGCCTTA CTTTTTTGCCTGCTC YPK_2978 3278751 - 3278467 - | hypothetical protein YPK_2979 3279178 - 3278744 - | cyclase/dehydrase YPK_2980 3279327 - 3279821 + | SsrA-binding protein TERM 3420 3280306 - 3280280 - f 93 -12.2 -3.71527 | opp_overlap 3280280, overlap 3280274 GGTGAAGTACGGAAA GCCCGCATCCCT TCT AGGTTTGCGGGC TTTTTTGTGTCTGTA TERM 3421 3280280 - 3280306 + F 100 -12.2 -5.4492 | opp_overlap 3280274 3280280 GGTGAAGTACGGAAA GCCCGCATCCCT TCT AGGTTTGCGGGC TTTTTTGTGTCTGTA YPK_2981 3280416 - 3280946 + | phage integrase family protein YPK_2982 3280995 - 3281258 + | transposase IS3/IS911 family protein YPK_2983 3281341 - 3281526 + | integrase TERM 3422 3281669 - 3281656 - T 78 -9.5 -3.737 | opp_overlap 3281654 3281651 CAACCTTCTACGAAA GGGGC GTTC GCCCC AATAGTTAATCAAGA YPK_2984 3281940 - 3281689 - | hypothetical protein YPK_2985 3282207 - 3282335 + | hypothetical protein TERM 3423 3282386 - 3282398 + F 87 -4.9 -5.4492 | opp_overlap 3282386 3282384, overlap 3282374 TCTTCATCAACAAGA TGATT ATT AATCA TTTTTTATATCTATC YPK_2986 3282651 - 3283418 + | alpha/beta hydrolase fold YPK_2987 3283468 - 3283575 + | hypothetical protein YPK_2988 3283562 - 3283738 + | hypothetical protein YPK_2989 3283750 - 3284037 + | CopG/DNA-binding domain-containing protein TERM 3424 3284049 - 3284092 + F 73 -6 -4.43859 | opp_overlap 3284030 3284056, overlap 3284056 CTAACCCTGTCGGTT ACCACAACAGCGTGGTGTAA GTGA TTACGCCACGCTGTTATTAC TTTTATGCCGTTATG TERM 3425 3284085 - 3284056 - f 100 -15.1 -3.40403 | opp_overlap 3284049 3284056 TGTCGGTTACCACAA CAGCGTGGTGTAA GTGA TTACGCCACGCTG TTATTACTTTTATGC TERM 3426 3284056 - 3284085 + F 100 -17.3 -3.9978 | opp_overlap 3284056, overlap 3284049 TGTCGGTTACCACAA CAGCGTGGTGTAA GTGA TTACGCCACGCTG TTATTACTTTTATGC YPK_2990 3284454 - 3284981 + | flavodoxin TERM 3427 3285032 - 3284996 - f 100 -12.4 -3.61517 | opp_overlap 3284996 3285000, overlap 3285000 ATCTCCCCGCAACAA GAAACGCTCTGCGATA GTATT CACAGCAGAGCGTTTC TGTTCCAGTCACTGG TERM 3428 3284996 - 3285032 + F 71 -9.6 -3.06492 | opp_overlap 3284996 3285000, overlap 3285000 ATCTCCCCGCAACAA GAAACGCTCTGC GATAGTATTCACA GCAGAGCGTTTC TGTTCCAGTCACTGG TERM 3429 3285028 - 3285000 - f 78 -7.4 -4.44667 | opp_overlap 3284996 3285000, overlap 3284996 CCCCGCAACAAGAAA CGCTCTGCGATA GTATT CACAGCAGAGCG TTTCTGTTCCAGTCA YPK_2991 3285348 - 3285794 + | ferric uptake regulator family protein TERM 3430 3286124 - 3286106 - T 100 -11.7 -5.40072 | TTTCGGGCAAAAAAA TCCCCGG ACCAG CCGGGGA AATACGATCAACTCA YPK_2992 3288910 - 3286235 - | Beta-N-acetylhexosaminidase TERM 3431 3286724 - 3286694 - G 72 -10.4 -3.05844 | overlap 3286707 CGTTTCATTCCAAGA CTGACCGGAGATAC CCT GTACACCCGGCCAG GGTTTATCACTCTTC YPK_2993 3290659 - 3289238 - | outer membrane porin TERM 3432 3290283 - 3290301 + g 71 -7.4 -4.11623 | TCGTCCCAGCGGGTT TTGGCGTC ACT GAAGCCAA TTTCATTTGGTGCTG TERM 3433 3291342 - 3291323 - R 100 -10.7 -5.4251 | opp_overlap 3291321 GTCAGAGACAAAAAA GGCGTGG ACTGTG CCACGCC AATTGAATCTGAGCG YPK_2994 3293032 - 3291365 - | glutaminyl-tRNA synthetase TERM 3434 3293165 - 3293125 - R 100 -11.9 -4.88918 | opp_overlap 3293136, overlap 3293129 3293135 3293136 TTACGGCAAACAAAA CAAATAAATATCCTCCGGC ATA GCCGGAGGTTTTTCATATG CGCCTATAAGGCTCT TERM 3435 3293161 - 3293129 - R 100 -11.3 -4.96996 | opp_overlap 3293136, overlap 3293125 3293135 3293136 GGCAAACAAAACAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 3436 3293155 - 3293135 - R 100 -12.5 -4.03308 | opp_overlap 3293136, overlap 3293129 3293125 3293136 CAAAACAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 3437 3293154 - 3293136 - R 100 -16 -2.99545 | opp_overlap 3293136, overlap 3293135 3293129 3293125 AAAACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 3438 3293136 - 3293154 + r 100 -16 -4.8048 | opp_overlap 3293136 3293135 3293129 3293125 AAAACAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPK_2995 3293693 - 3293235 - | transposase IS200-family protein TERM 3439 3293824 - 3293806 - R 100 -16 -3.07307 | opp_overlap 3293806 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3440 3293806 - 3293824 + r 100 -16 -4.36914 | opp_overlap 3293806 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 3441 3293844 - 3293867 + r 100 -15.4 -3.4052 | opp_overlap 3293844 CTGGGCACAAAAAAA CGGGAAGAGA TCGC TCTCTTCCCG TTGGTTCGATTAAAA TERM 3442 3293867 - 3293844 - R 100 -15.4 -5.60993 | opp_overlap 3293844 CTGGGCACAAAAAAA CGGGAAGAGA TCGC TCTCTTCCCG TTGGTTCGATTAAAA YPK_2996 3295991 - 3293958 - | PTS system, N-acetylglucosamine-specific IIBC subunit TERM 3443 3296074 - 3296064 - H 74 -6.8 -4.37886 | CTACCTTTTAGAAAA GTGC ATG GCAC ACATTATATAAACAC YPK_2997 3296390 - 3297190 + | glucosamine-6-phosphate isomerase TERM 3444 3297582 - 3297572 - g 79 -2.4 -5.42862 | ATATCTGCAAAAAAA CCAG CAT CAGG CGCTCGGCTTGCACC YPK_2998 3297210 - 3298355 + | N-acetylglucosamine-6-phosphate deacetylase YPK_2999 3298372 - 3299598 + | ROK family protein TERM 3445 3299614 - 3299629 + F 73 -9 -3.42346 | opp_overlap 3299611 GTTGAAAGAAACTGT CATGGC CACA GCCATG TTATAGTGACCTATT YPK_3000 3299671 - 3300423 + | HAD family hydrolase YPK_3001 3300778 - 3302442 + | asparagine synthase (glutamine-hydrolyzing) TERM 3446 3302473 - 3302456 - T 78 -9.8 -3.53189 | AATTGAACACGATAA GCGGGG TTAATC CCCCGC GCCGACTGCTGACAA YPK_3002 3302628 - 3302491 - | hypothetical protein TERM 3447 3302626 - 3302650 + g 100 -14.3 -5.47218 | opp_overlap 3302625 3302621 3302626 3302629 ATAGAGAATAGATAG CAAGGTCGCCT CTG GGGCGGCCTTG TTTTTTTACGTCACC TERM 3448 3302650 - 3302626 - G 75 -11.4 -2.50385 | opp_overlap 3302626, overlap 3302625 3302621 3302629 ATAGAGAATAGATAG CAAGGTCGCC TCTGG GGCGGCCTTG TTTTTTTACGTCACC TERM 3449 3303161 - 3303123 - R 79 -11.7 -2.53911 | opp_overlap 3303114 3303126 CCAAGCGGTAAGGCA CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG TATCCCAGCCATCTT TERM 3450 3303313 - 3303275 - R 79 -11.7 -2.53911 | opp_overlap 3303278 CCAAGCGGTAAGGCA CCAGGTTTTGATCCTGG CATTC CCAGGTTCGAATCCTGG TATCCCAGCCATACA TERM 3451 3303540 - 3303525 - R 73 -6 -4.51196 | opp_overlap 3303525, overlap 3303520 GCCAAATTTAGAAAA GCTCGC TTCG GCGGGC TTTTTGCTTTTTCAT TERM 3452 3303525 - 3303540 + r 100 -8.2 -5.1971 | opp_overlap 3303520 3303525 GCCAAATTTAGAAAA GCTCGC TTCG GCGGGC TTTTTGCTTTTTCAT TERM 3453 3303749 - 3303725 - R 100 -16.5 -2.73364 | overlap 3303741 CCGTCAGCGGAATGA TGAGCCCGGCA GAA TACCGGGCTCA GGCAGAAAGGCAGTA YPK_3004 3305107 - 3303926 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase TERM 3454 3305137 - 3305152 + H 70 -5.4 -4.52589 | opp_overlap 3305151, overlap 3305138 AAAAGTGAATGTACT TCTTGC ATTA GCAAGG TTTTGTCTAACCGCA YPK_3005 3305244 - 3306773 + | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 3455 3306847 - 3306870 + F 86 -6.7 -5.07652 | opp_overlap 3306849, overlap 3306849 TCCCGCCCGCGTAAC GAGGCACTG CATTGT CAGTGCCTG TTTTATTTTAGCGGG TERM 3456 3306849 - 3306868 + F 85 -9.3 -4.16397 | opp_overlap 3306849, overlap 3306847 CCGCCCGCGTAACGA GGCACTG CATTGT CAGTGCC TGTTTTATTTTAGCG YPK_3006 3307101 - 3308174 + | PhoH family protein YPK_3007 3308171 - 3308644 + | hypothetical protein TERM 3457 3308912 - 3308902 - g 73 -5.4 -4.64676 | overlap 3308903 TGATTCTGAACAAAA CGAT CTG ATCG ATCCCGATACCCGAG YPK_3008 3308762 - 3309640 + | transporter-associated region TERM 3458 3309672 - 3309698 + G 79 -11.6 -3.11701 | overlap 3309683 3309685 GCTCTATTCCTCCAA CGCCAGTGGG TTCGCGC CCTACTGGCG CTATTTTTTGGTGCC TERM 3459 3309683 - 3309701 + G 85 -5.9 -5.17353 | overlap 3309672 3309685 CCAACGCCAGTGGGT TCGCGCC CTACT GGCGCTA TTTTTTGGTGCCTGT TERM 3460 3309685 - 3309699 + G 77 -8.5 -4.2131 | overlap 3309672 3309683 AACGCCAGTGGGTTC GCGCC CTACT GGCGC TATTTTTTGGTGCCT YPK_3009 3309648 - 3311195 + | apolipoprotein N-acyltransferase TERM 3461 3311430 - 3311442 + F 74 -4.1 -4.97666 | TAGTGCTTCCAGTCA CAGAT AAC GTCTG TTTTTCTCATCTGTT TERM 3462 3311484 - 3311504 + F 79 -11.2 -3.11178 | TCTATTCGTACCTGA TAGCCCTG CACTC CAGGGCTA TATTCCGCTTAGTTC TERM 3463 3312114 - 3312098 - g 75 -5.1 -4.7416 | opp_overlap 3312101 GCAAAAGGTTAAAAA CAACGGT GTT ATCGTTG TGGGCCACCGTGAAT TERM 3464 3312419 - 3312408 - g 77 -4.4 -5.1675 | opp_overlap 3312409 3312410, overlap 3312410 TTACTCACCAAAAAA GACT CTGA AGTC AAAGACTTCAAAGAT TERM 3465 3312432 - 3312410 - g 91 -11.4 -4.2131 | opp_overlap 3312410 3312409, overlap 3312408 ACTCACCAAAAAAGA CTCTGAAGTC AAA GACTTCAAAG ATTTGGCAGGTAAAG YPK_3010 3311976 - 3312893 + | extracellular solute-binding protein TERM 3466 3312924 - 3312906 - f 77 -10.2 -3.07102 | overlap 3312903 TAACAATAATAATCA GGGCGGGT CAT ACCTGCCC TACCGATTGATGATG TERM 3467 3312958 - 3312984 + F 100 -15.2 -5.60993 | opp_overlap 3312955 3312958 TATTGGTAGACAGGA TGCGGGGTGG TCGTTCC CCACCCCGCA TTTTTTTGTCAACCC TERM 3468 3312984 - 3312958 - f 100 -15.2 -2.69468 | opp_overlap 3312958, overlap 3312955 TATTGGTAGACAGGA TGCGGGGTGG TCGTTCC CCACCCCGCA TTTTTTTGTCAACCC YPK_3011 3313067 - 3313807 + | polar amino acid ABC transporter, inner membrane subunit YPK_3012 3313807 - 3314481 + | polar amino acid ABC transporter, inner membrane subunit YPK_3013 3314481 - 3315206 + | ABC transporter related TERM 3469 3315211 - 3315242 + T 87 -5 -5.49579 | overlap 3315212 3315215 TCTTGCATTAATTCG TTCTCCTCCCCTGC GTTT GTAGGGGAGGTCAC TTTTATTTTTTATGA TERM 3470 3315212 - 3315241 + T 75 -8.5 -3.87307 | overlap 3315211 3315215 CTTGCATTAATTCGT TCTCCTCCCCTGC GTTT GTAGGGGAGGTCA CTTTTATTTTTTATG TERM 3471 3315215 - 3315238 + T 100 -14.6 -2.95933 | overlap 3315212 3315211 GCATTAATTCGTTCT CCTCCCCTGC GTTT GTAGGGGAGG TCACTTTTATTTTTT YPK_3014 3315822 - 3315340 - | hypothetical protein TERM 3472 3318009 - 3317992 - g 73 -3.4 -4.85599 | opp_overlap 3317996 GTCATGGTAGAAAAA TACGGC GCGGAT ACCGTA CGTCTGTTTATGATG YPK_3015 3316084 - 3318666 + | leucyl-tRNA synthetase TERM 3473 3318708 - 3318742 + G 74 -6.3 -4.34402 | ATTCTGACGTTGTTG CTGGGGTTGGCGGTG CTGGT CACCGCTGGCTGCGG TTTTAATCTGCGGGG YPK_3016 3318681 - 3319304 + | rare lipoprotein B TERM 3474 3319329 - 3319356 + G 78 -9 -3.98649 | opp_overlap 3319325, overlap 3319330 ACCCTGAACAACTTG TCGCGCAGCTCC ATGA GGGGCTACGCGC TTGTTATCTATTGTG TERM 3475 3319330 - 3319355 + G 81 -12.5 -2.98105 | opp_overlap 3319325, overlap 3319329 CCCTGAACAACTTGT CGCGCAGCTCC ATGA GGGGCTACGCG CTTGTTATCTATTGT YPK_3017 3319301 - 3320335 + | DNA polymerase III, delta subunit YPK_3018 3320325 - 3320987 + | nicotinate (nicotinamide) nucleotide adenylyltransferase YPK_3019 3321210 - 3321527 + | iojap-like protein YPK_3020 3321531 - 3322001 + | hypothetical protein TERM 3476 3322462 - 3322449 - g 81 -8.1 -4.62471 | GCTAACTTTGAAAAA GAGCG CAAA CGCTC ACGTCGCTTTACCTC TERM 3477 3323434 - 3323408 - g 70 -2.2 -4.86033 | overlap 3323409 3323410 AAAGCGCCATAAAAA GCCTTGGTATCA GGG TGATACCATTCC GGTAGGTATTGGCCA TERM 3478 3323781 - 3323804 + G 74 -8.9 -3.78022 | GTGGCAGAACACCTG CGCGACCAT AAGTTA ATGGTTGCG TTTGCTCCCTATGAG YPK_3021 3322083 - 3323978 + | penicillin-binding protein 2 TERM 3479 3324664 - 3324674 + G 71 -8.2 -3.76767 | overlap 3324662 3324663 ATCAATTCTGGTTGC GGCC TCC GGCC TGTTTGTGTTGTTCC YPK_3022 3324164 - 3325276 + | rod shape-determining protein RodA YPK_3023 3325286 - 3326368 + | rare lipoprotein A TERM 3480 3326449 - 3326412 - f 100 -14.3 -5.14163 | opp_overlap 3326409 3326423 3326444 ACTGACTAATAAAAA TAACCGTAACCGCCTGT GCAA ACAGGGTGTTACGGTTA AAACTGTTTGGGTGA YPK_3024 3326771 - 3327973 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 3481 3328077 - 3328106 + F 72 -6.3 -4.3739 | opp_overlap 3328078, overlap 3328083 TATCTGGCGAACAGT ACGTCACTCCCGC TCCG GCGGGAGTTGTGA TTTTATAGCCGGATA TERM 3482 3328083 - 3328100 + F 100 -12.7 -3.72405 | opp_overlap 3328078, overlap 3328077 GCGAACAGTACGTCA CTCCCGC TCCG GCGGGAG TTGTGATTTTATAGC YPK_3025 3328171 - 3328434 + | hypothetical protein TERM 3483 3328500 - 3328529 + F 86 -7.9 -4.62085 | gap 2, opp_overlap 3328499, overlap 3328496 CAACGCGCTAATGAC GGCCC-GC-CCTG TTTATT CAGGTGCCGGGCC TTATTTTTTCGGGGT YPK_3026 3328646 - 3329347 + | lipoate-protein ligase B TERM 3484 3329513 - 3329501 - f 80 -6.3 -4.90013 | GAATTTAATGAAAAA TCTCA AGT TGAGA GATTCAGAACTGGAA YPK_3027 3329540 - 3330505 + | lipoic acid synthetase TERM 3485 3330539 - 3330521 - T 74 -9.6 -3.38046 | opp_overlap 3330521, overlap 3330506 3330519 3330522 GCGGTAGGCTAAAGA CTTCAGCC CAT GGCTGAAA TAACTTATTACACCT TERM 3486 3330538 - 3330522 - T 76 -10.9 -2.62613 | opp_overlap 3330521, overlap 3330506 3330521 3330519 CGGTAGGCTAAAGAC TTCAGCC CAT GGCTGAA ATAACTTATTACACC TERM 3487 3330577 - 3330597 + T 100 -11.9 -5.93809 | opp_overlap 3330577 GCAGCCACCAAAAAA CGGATTTCC ATT GGAGATCCG TTTTTTTTATCAGCC TERM 3488 3330597 - 3330577 - T 100 -9.7 -5.1675 | opp_overlap 3330577 GCAGCCACCAAAAAA CGGATTTCC ATT GGAGATCCG TTTTTTTTATCAGCC YPK_3028 3330943 - 3330686 - | twin arginine-targeting protein translocase YPK_3029 3331150 - 3330998 - | hypothetical protein YPK_3030 3331510 - 3331893 + | CrcB protein TERM 3489 3332295 - 3332278 - T 100 -10.5 -5.28176 | opp_overlap 3332278 GCTACCCATAAAAAA CCCGCCC AGTA AGGCGGG TTTTTAAAGATATGG TERM 3490 3332278 - 3332295 + T 100 -9.8 -4.61231 | opp_overlap 3332278 GCTACCCATAAAAAA CCCGCC CAGTAA GGCGGG TTTTTAAAGATATGG YPK_3031 3332525 - 3332316 - | cold-shock DNA-binding domain-containing protein YPK_3032 3332804 - 3333283 + | cold-shock DNA-binding domain-containing protein YPK_3033 3334143 - 3333553 - | LuxR family transcriptional regulator TERM 3491 3333961 - 3333940 - G 85 -5.7 -5.05505 | opp_overlap 3333940 3333959, overlap 3333945 ATCACAAATCAAAAA GACATCCGC TTCT GCGGGGGTC TTATCCAGACGTTTG TERM 3492 3334061 - 3334085 + g 90 -2.9 -5.78622 | overlap 3334063 TAGAATTTAATCTCT TTTTTAAATCC TAA GGATGTGAAGA TTTTTTTTACGATAG YPK_3034 3334593 - 3335558 + | hypothetical protein YPK_3035 3336131 - 3335937 - | hypothetical protein YPK_3036 3336574 - 3336861 + | antibiotic biosynthesis monooxygenase YPK_3037 3338667 - 3336877 - | ABC transporter related TERM 3493 3338315 - 3338293 - G 72 -10.6 -2.94695 | overlap 3338295 3338297 CTCAATAGATAATGA TAGACCGCCA GTC TGGCGCTCTA GGTGAAACCGCAAAC YPK_3038 3339078 - 3338875 - | hypothetical protein TERM 3494 3339164 - 3339153 - R 75 -3 -5.24551 | opp_overlap 3339153 TCAAACGAATAAAAA CAAA GCGA TTTG GTTATTCACAATAAA TERM 3495 3339248 - 3339217 - R 75 -9 -3.58329 | opp_overlap 3339216, overlap 3339245 3339247 CTAATTAACAAGCAA CCTATTACATAA TAAACAAT TTATGTAATAGG ATAATTATGATTTAT YPK_3039 3340052 - 3339237 - | myo-inositol catabolism IolB domain-containing protein TERM 3496 3339922 - 3339898 - G 74 -9.9 -3.54779 | opp_overlap 3339917, overlap 3339894 3339890 ATCAAAACCAAGCAA CGCTCATCGGG AAC CGCGGTGAGCG TCAGTGGCTGCCCTT YPK_3040 3341168 - 3340062 - | xylose isomerase domain-containing protein TERM 3497 3340268 - 3340279 + g 72 -5.8 -4.31329 | CACTCAACACCGCGT CCAG AAAA CTGG TTTTACGGTTTTTGA YPK_3041 3343159 - 3341189 - | ribokinase-like domain-containing protein TERM 3498 3342817 - 3342830 + g 75 -3.7 -5.05601 | TACTCAGGAGTACCA GCGCC GTGA GCCGC TTTTTATCTGTGGTC YPK_3042 3344341 - 3343208 - | oxidoreductase domain-containing protein YPK_3043 3345393 - 3344365 - | monosaccharide-transporting ATPase TERM 3499 3345314 - 3345303 - G 73 -2.2 -5.1244 | overlap 3345306 GCAGGAACATAAAAA TCAG GACG CCGA AGCGTTCAAAAAAAG YPK_3044 3346952 - 3345405 - | ABC transporter related YPK_3045 3347930 - 3347001 - | monosaccharide-transporting ATPase TERM 3500 3347707 - 3347692 - G 73 -3.2 -4.84311 | gap 1, opp_overlap 3347700, overlap 3347693 GGCGAGACAATAAAA CCCTGCG CGC CAC-GGG TGATGGCATTTTCCA YPK_3046 3349024 - 3348038 - | inositol 2-dehydrogenase YPK_3047 3349334 - 3349185 - | hypothetical protein YPK_3048 3351264 - 3349318 - | thiamine pyrophosphate binding domain-containing protein TERM 3501 3350422 - 3350404 - G 72 -11 -2.5655 | overlap 3350403 GCCAGTGACACCAAT TCCCCCCA AGT TGAGGGGA TGATCACTTGGCAGC YPK_3049 3352804 - 3351278 - | methylmalonate-semialdehyde dehydrogenase YPK_3050 3353046 - 3352924 - | hypothetical protein YPK_3051 3353162 - 3354016 + | RpiR family transcriptional regulator TERM 3502 3354264 - 3354242 - T 77 -10.6 -3.14344 | CATCTGCTGTACTAA CGCCCTGAAA CGC TCTCAGGGCA TGACTCTGCCATAGC YPK_3052 3354479 - 3354315 - | hypothetical protein TERM 3503 3355855 - 3355837 - g 81 -11 -3.61894 | AATCTGCTGCAACAA TCAACGCC GCT GGCGCTGA CCCTCAATGAGGCCG TERM 3504 3356691 - 3356674 - g 73 -5.5 -4.56597 | opp_overlap 3356677, overlap 3356679 TTCCTGGTGGAAAAA GAAGGGG ATGT CTCCTTC CTGCCCACCCGAGCC TERM 3505 3357371 - 3357355 - g 85 -12.3 -3.37056 | opp_overlap 3357354 ACGACCGATCTACAA GGGATGG CGA CCATCCC ATTGGATCTGAAATC YPK_3053 3354616 - 3360594 + | alpha-2-macroglobulin domain-containing protein TERM 3506 3360632 - 3360602 - f 83 -9 -4.23434 | gap 1, overlap 3360605 3360606 CAAAATAGCTGAAAA CAAC-GCGCCCCG CATCGC CGGGGCGCTATCG GATTTCAGCCGTAAC TERM 3507 3360628 - 3360605 - f 93 -10.9 -4.2142 | overlap 3360602 3360606 AATAGCTGAAAACAA CGCGCCCCG CATCGC CGGGGCGCT ATCGGATTTCAGCCG TERM 3508 3360627 - 3360606 - f 100 -14.4 -3.11767 | overlap 3360605 3360602 ATAGCTGAAAACAAC GCGCCCCG CATCGC CGGGGCGC TATCGGATTTCAGCC TERM 3509 3362339 - 3362360 + G 73 -7.2 -4.15114 | CAACAGCGCCTTTGT CGGTGCCG ATGCCG CCGCACCG TTATTCTTTAATATT YPK_3054 3360651 - 3363014 + | penicillin-binding protein 1C TERM 3510 3363133 - 3363108 - T 75 -8.2 -3.85704 | opp_overlap 3363108, overlap 3363100 TGAGTAACCAGCAAA CGGCCGGAGG GCGGTT CCTCTAGCCG CGTCACATGTGAAGG TERM 3511 3363186 - 3363160 - T 95 -8.1 -5.16237 | gap 2 AAGGGGATCAAAAAA GCCCCAC-A-GGT CAC ACCATTGTGGGGC AGCAATCTCGCGTTT YPK_3055 3363472 - 3363227 - | putative transcriptional regulator, Nlp YPK_3056 3363577 - 3363687 + | hypothetical protein TERM 3512 3363921 - 3363897 - f 73 -5.7 -4.44355 | opp_overlap 3363897, overlap 3363899 TAATTCTAAAAATAA GTTGAATGGCT CAT ACCCATTCAGC TCTGGTCATCTTCTT TERM 3513 3363934 - 3363946 + F 78 -4.1 -5.24551 | overlap 3363942 AGCTCTGGTCATCTT CTTCG TAA TGAAG TTTTTCTTCATTTAA TERM 3514 3364383 - 3364397 + GF 100 -5.7 -5.76949 | CTATTTTTTCCTGTA CCGAT CCCAC ATCGG TTTTTTTTGGAAGTC YPK_3057 3364145 - 3364987 + | hypothetical protein TERM 3515 3365136 - 3365158 + GF 71 -4.8 -4.58859 | TTTTCATGGAAGGTT GGGTTTGTAA TAT TTGCAGTCCC TTTATTGTTCTATTT YPK_3058 3364956 - 3365396 + | hypothetical protein YPK_3059 3365629 - 3366006 + | hypothetical protein TERM 3516 3366129 - 3366094 - T 72 -7.9 -3.76767 | gap 2, opp_overlap 3366101, overlap 3366092 3366095 TGAAGAATATAAATA TG-T-TCAAGCACACTT GAAA AAGTGTGCTTGATATCA GAAACTAGTAAACCC TERM 3517 3366101 - 3366120 + T 81 -10.8 -3.25942 | opp_overlap 3366095 3366094 3366092 TATAAATATGTTCAA GCACACTT GAAA AAGTGTGC TTGATATCAGAAACT YPK_3060 3366613 - 3366134 - | Hcp1 family type VI secretion system effector YPK_3061 3366888 - 3366637 - | hypothetical protein YPK_3062 3367166 - 3366927 - | hypothetical protein YPK_3063 3367695 - 3367814 + | hypothetical protein TERM 3518 3367893 - 3367915 + F 78 -9.8 -3.54926 | opp_overlap 3367897, overlap 3367891 GATAAACATAACGTT CAAACCGTCC CAA GGGCGGTGTG TCTCTTTTTACAATG TERM 3519 3368528 - 3368505 - g 83 -11.8 -3.53012 | gap 1, opp_overlap 3368496 3368504 3368515 CGGGTCTGGTCGAAA TCG-GCCCTTC CTG GAAGGGCACGA GTATCGTGCCGCTTC YPK_3064 3367976 - 3369892 + | outer membrane autotransporter TERM 3520 3370007 - 3369981 - T 84 -10.1 -3.82218 | gap 1, opp_overlap 3369990, overlap 3369982 3369997 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3521 3370008 - 3369982 - T 72 -10.1 -2.88849 | gap 1, opp_overlap 3369990, overlap 3369981 3369997 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 3522 3370084 - 3370105 + T 91 -6.5 -5.56264 | opp_overlap 3370081, overlap 3370087 CTTTGTCAATAACCT CAGCCCCTC TTCT GAGGGGTTA TTTTTTCTATTTCAC TERM 3523 3370087 - 3370102 + T 100 -10.4 -4.8277 | opp_overlap 3370081, overlap 3370084 TGTCAATAACCTCAG CCCCTC TTCT GAGGGG TTATTTTTTCTATTT TERM 3524 3370158 - 3370146 - T 95 -3.4 -6.28631 | TAAATTAAAAAAAAA TGCT CAGTC AGCA AGATAATTTCCACAA YPK_3067 3372128 - 3371007 - | cupin 4 family protein TERM 3525 3372584 - 3372563 - R 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPK_3068 3373766 - 3372558 - | transposase mutator type YPK_3069 3374786 - 3373914 - | pseudouridine synthase TERM 3526 3373974 - 3373988 + g 80 -4.2 -5.252 | overlap 3373964 GGAAGCGGTGTTGTC GTCGGA TTT TTCGGC TTTTTTCTGCCCCTG TERM 3527 3374706 - 3374690 - G 73 -2.3 -5.07486 | TACCGTTAATAAAAA CATTG CCCTGTT CAATG TAGCGATCGCCATCG TERM 3528 3375330 - 3375343 + G 71 -4.5 -4.57482 | overlap 3375326 GGTGTCCGGCCCGGA CGTCA GGCT TGGCG TTTGTTTCTCAGTAG YPK_3070 3375186 - 3377393 + | hypothetical protein TERM 3529 3377630 - 3377608 - g 89 -6.2 -5.34365 | opp_overlap 3377608 3377609, overlap 3377602 3377609 GCAGAACAAGAAAAA TGCAGAGAAG AGC CTTCACTGCC TTGTCCTGAGTCCAA TERM 3530 3377629 - 3377609 - g 76 -9.7 -3.78992 | opp_overlap 3377609 3377608, overlap 3377608 3377602 CAGAACAAGAAAAAT GCAGAGAAG AGC CTTCACTGC CTTGTCCTGAGTCCA YPK_3071 3377386 - 3377916 + | hypothetical protein TERM 3531 3377948 - 3377935 - f 82 -2.3 -5.72254 | overlap 3377940 TTAAACAATAAAAAA GAACC GTCT GGCCC CATGCCGACCCGTTA YPK_3072 3378072 - 3380453 + | glycoside hydrolase family 3 protein YPK_3073 3382160 - 3380532 - | hypothetical protein YPK_3074 3382442 - 3382317 - | hypothetical protein YPK_3075 3382633 - 3383484 + | 2,5-didehydrogluconate reductase TERM 3532 3384345 - 3384323 - g 78 -6.2 -4.82901 | opp_overlap 3384306 TTGTTGGCACAAAAA CCTTGGATTG TGC CAATCCCCGG AACCACAAAACTGCA YPK_3076 3383510 - 3384499 + | aldo/keto reductase TERM 3533 3384528 - 3384553 + T 100 -13.4 -3.15544 | opp_overlap 3384523 3384522 TCGCTCAAATTTCAT CTGGCTTACG ATAATC CGTAAGCCAG TTAATCCGAATAACG YPK_3077 3385447 - 3384554 - | LysR family transcriptional regulator TERM 3534 3385568 - 3385551 - R 86 -7.7 -4.61231 | gap 1, opp_overlap 3385551 3385551, overlap 3385553 TTAGACCCCCAAAAA CGGGAAGC CCT GCT-CCCG GTATTCGATTTCAGC YPK_3078 3386055 - 3385750 - | hypothetical protein YPK_3079 3386553 - 3386152 - | Zn-dependent hydrolase of the beta-lactamase fold TERM 3535 3386479 - 3386459 - G 80 -7.5 -4.58236 | TACAAAAGATTAAAA GCCAGCACC AGC GGTGGTAGC GTTAATAAGGCGAAA YPK_3080 3387854 - 3386535 - | putative dual specificity phosphatase YPK_3081 3389610 - 3387847 - | alpha/beta hydrolase fold TERM 3536 3389566 - 3389548 - G 76 -9.6 -3.64716 | opp_overlap 3389554, overlap 3389546 3389551 CCAGTGGCGAAAATA CAACGATG TTT CATCGCTG GCGGTGAACATGCCT TERM 3537 3389563 - 3389551 - G 70 -7.7 -3.95435 | opp_overlap 3389554, overlap 3389548 3389546 GTGGCGAAAATACAA CGATG TTT CATCG CTGGCGGTGAACATG YPK_3082 3390239 - 3389607 - | phospholipid/glycerol acyltransferase YPK_3083 3391178 - 3390249 - | phosphatidate cytidylyltransferase YPK_3084 3391773 - 3391171 - | CDP-alcohol phosphatidyltransferase YPK_3085 3392176 - 3392000 - | hypothetical protein YPK_3086 3392418 - 3392173 - | hypothetical protein YPK_3087 3393048 - 3393290 + | hypothetical protein TERM 3538 3393353 - 3393312 - g 100 -16.1 -2.91702 | opp_overlap 3393317, overlap 3393317 AACACGATAAAATAT TAAAATGGCCGGAAGTTAA TGAT TTAGCTTCCGGCCATTTTT TATGGCTCCCTGAAT TERM 3539 3393348 - 3393317 - g 100 -16 -4.58236 | opp_overlap 3393317, overlap 3393312 GATAAAATATTAAAA TGGCCGGAAGTTAA TGAT TTAGCTTCCGGCCA TTTTTTATGGCTCCC TERM 3540 3393317 - 3393348 + G 100 -18.2 -5.28176 | opp_overlap 3393317 3393312 GATAAAATATTAAAA TGGCCGGAAGTTAA TGAT TTAGCTTCCGGCCA TTTTTTATGGCTCCC YPK_3088 3393275 - 3393922 + | hypothetical protein YPK_3089 3394036 - 3394236 + | hypothetical protein TERM 3541 3394690 - 3394706 + G 85 -7.2 -4.89567 | TAAATCACTACCTGA CCCGTC TAAAT GGCGGG TTTTGTATTTTAAGC YPK_3090 3394653 - 3394811 + | hypothetical protein TERM 3542 3394908 - 3394855 - T 73 -9.8 -3.0497 | opp_overlap 3394866 ACATTATGGCTAACA CTGACATATCAGTGACACTTCTTT GGCACT ATAGATGCGTCACTAATATGTCAC CCGCTTCATAAGCAT YPK_3091 3395353 - 3394937 - | tail assembly chaperone gp38 YPK_3092 3396768 - 3395350 - | hypothetical protein TERM 3543 3396548 - 3396564 + g 75 -5.1 -4.6821 | opp_overlap 3396548 ATAATTGCATAAGAG GAATCGG CCA CGGATTC TTTTATATTGCCATT YPK_3093 3397783 - 3396785 - | hypothetical protein YPK_3094 3398829 - 3397783 - | hypothetical protein TERM 3544 3399141 - 3399154 + H 81 -9.5 -3.81259 | opp_overlap 3399141 AAAACAACGCAAAAA CCCGC CGGG GCGGG TTTAGTCGATTGTGT TERM 3545 3399154 - 3399141 - H 100 -9.5 -4.85195 | opp_overlap 3399141 AAAACAACGCAAAAA CCCGC CGGG GCGGG TTTAGTCGATTGTGT YPK_3095 3399237 - 3399416 + | hypothetical protein YPK_3096 3399678 - 3399445 - | hypothetical protein TERM 3546 3399740 - 3399717 - R 100 -15.4 -4.45117 | opp_overlap 3399717 GAGATTTTAAATAAA CTAAACCCGC CGGA GCGGGTTTAG TTTTTATTCGGAGCA TERM 3547 3399717 - 3399740 + r 100 -15.4 -5.06414 | opp_overlap 3399717 GAGATTTTAAATAAA CTAAACCCGC CGGA GCGGGTTTAG TTTTTATTCGGAGCA YPK_3097 3400390 - 3399758 - | hypothetical protein TERM 3548 3400447 - 3400430 - R 71 -3.4 -4.9218 | opp_overlap 3400445 TACTTATGACAAAAA CCGAAA TTTCGT CTTCGG TGTAACGGCATAACC YPK_3098 3401361 - 3400651 - | NLP/P60 protein TERM 3549 3401338 - 3401348 + g 77 -6.8 -4.63586 | opp_overlap 3401337 GGCATGGGCCAATAT CGCT TTA AGCG TTTTATCTCTCATCT YPK_3099 3402116 - 3401364 - | phage minor tail protein L YPK_3100 3402474 - 3402133 - | minor tail family protein YPK_3101 3402683 - 3402477 - | hypothetical protein YPK_3102 3402788 - 3403510 + | XRE family transcriptional regulator YPK_3103 3403647 - 3404069 + | hypothetical protein YPK_3104 3404134 - 3404880 + | hypothetical protein TERM 3550 3404942 - 3404930 - g 71 -6.3 -4.20707 | opp_overlap 3404929 TTTGATGAAAAAACA TACAC CTA GTGTA AATCTTCTTGGTGAA YPK_3105 3404877 - 3405458 + | hypothetical protein TERM 3551 3405466 - 3405483 + T 100 -9.8 -5.29782 | TAAATTAACTTTTAA CCCGGC CCCGCT GCCGGG TTTTTTGTGCCTGTA YPK_3106 3405763 - 3405527 - | hypothetical protein YPK_3107 3406321 - 3406776 + | integrase YPK_3108 3406850 - 3407092 + | DinI family protein YPK_3109 3407106 - 3407351 + | DinI family protein TERM 3552 3407444 - 3407465 + T 81 -4.4 -5.29782 | AAAATTGATTACTTG GCCCAC CGCGTCCCTT GTGGGC TTTTTTGTGCCTGTA TERM 3553 3407711 - 3407728 + T 73 -9.8 -3.0516 | opp_overlap 3407709 3407707 3407711, overlap 3407710 CTACACATGAATAGA CCGGGC CATTAA GCCCGG CTTTGATTGTTACTG TERM 3554 3407728 - 3407711 - T 77 -10.5 -3.17529 | opp_overlap 3407711 3407710, overlap 3407709 3407707 CTACACATGAATAGA CCGGGCC ATTA AGCCCGG CTTTGATTGTTACTG YPK_3110 3408175 - 3407738 - | tail assembly chaperone gp38 YPK_3111 3409276 - 3408185 - | hypothetical protein TERM 3555 3409012 - 3409029 + g 71 -7.1 -4.10007 | CCGCTGCTGCTATTT CAGATAA GTTA TTATCTG TTTTGAGGAACTTGT YPK_3112 3409923 - 3409327 - | hypothetical protein YPK_3113 3411056 - 3409920 - | baseplate J family protein YPK_3114 3411497 - 3411060 - | GP46 family protein YPK_3115 3412087 - 3411494 - | Mu Gp45 domain-containing protein YPK_3116 3413157 - 3412087 - | Mu P family protein YPK_3117 3414560 - 3413154 - | DNA circulation family protein TERM 3556 3414601 - 3414586 - R 95 -7.5 -5.42514 | opp_overlap 3414586 CCAGAAATGAAAAAA CCCGC ACGATG GCGGG TGATATTTTCAGTAA YPK_3118 3415167 - 3414637 - | phage-related membrane protein YPK_3119 3417217 - 3415271 - | hypothetical protein YPK_3120 3417639 - 3417340 - | putative bacteriophage protein YPK_3121 3418015 - 3417641 - | hypothetical protein YPK_3122 3419461 - 3418028 - | Mu tail sheath family protein TERM 3557 3418823 - 3418811 - G 71 -10.5 -2.7556 | opp_overlap 3418807 3418806, overlap 3418808 AATTTTATTCAACGA CGCCG TAT CGGCG TACGGATTGATGATG YPK_3123 3419802 - 3419458 - | hypothetical protein YPK_3124 3420194 - 3419802 - | hypothetical protein TERM 3558 3420131 - 3420159 + g 70 -9.6 -3.23538 | gap 1, overlap 3420132 3420135 GTTGGGTATCAGCCT CGAACTCGGGCGG CAAG CCGCCC-AGTTCA TTGATAGTCGGTTGT TERM 3559 3420132 - 3420158 + g 81 -13.1 -2.53641 | gap 1, overlap 3420131 3420135 TTGGGTATCAGCCTC GAACTCGGGCGG CAAG CCGCCC-AGTTC ATTGATAGTCGGTTG YPK_3125 3421242 - 3420196 - | major capsid protein E YPK_3126 3421807 - 3421352 - | antitermination protein TERM 3560 3421499 - 3421480 - G 71 -7.1 -4.08706 | opp_overlap 3421480 3421480, overlap 3421481 GTCCCATCAGATAAA CGCCACC GCGCTG GGTGGCA GTTGTGGTATCTACG YPK_3127 3422017 - 3422262 + | hypothetical protein TERM 3561 3422656 - 3422643 - g 77 -4.5 -4.96848 | opp_overlap 3422643 TGGCTGACAGAAAAA GAGCA TAAG CGCTC TTTGGATGATGACCG YPK_3128 3422433 - 3423587 + | integrase family protein YPK_3129 3424641 - 3423793 - | hypothetical protein TERM 3562 3424701 - 3424663 - R 89 -11.8 -3.25823 | opp_overlap 3424662 3424661, overlap 3424670 TTTCCTTTATATCAA TGCATAATCGCCAGAC GAATGAG GGCTGGCGCTTATGCA GGTTATGTGTTTTGA YPK_3130 3425311 - 3425213 - | hypothetical protein YPK_3131 3425691 - 3425308 - | hypothetical protein YPK_3132 3426084 - 3425755 - | hypothetical protein YPK_3133 3426567 - 3426097 - | DNA repair protein RadC TERM 3563 3426611 - 3426590 - R 70 -3.6 -4.89567 | CCTTAAAATATAAAA CCCCACCG GTTTAT CGACAGGG CTTGAAGGGTGTCAG YPK_3134 3427459 - 3426638 - | hypothetical protein TERM 3564 3427488 - 3427513 + r 76 -10.3 -2.98072 | opp_overlap 3427489 ATTAAACAAAAGAAA ACGCCCCGCTC GAAT GAGCAGGGCGC TATGGTTATGCTGGG TERM 3565 3427512 - 3427489 - R 100 -16 -5.34857 | opp_overlap 3427488 TTAAACAAAAGAAAA CGCCCCGCTC GAAT GAGCAGGGCG CTATGGTTATGCTGG YPK_3135 3427886 - 3427548 - | hypothetical protein YPK_3136 3428371 - 3427907 - | hypothetical protein TERM 3566 3428731 - 3428741 + r 74 -6.8 -4.4009 | opp_overlap 3428731 GAGTGAATACAGCAA TCCC TGA GGGA TTTTATAACCTGAAG TERM 3567 3428797 - 3428778 - R 70 -7.2 -3.8591 | gap 1 GTGGATAATGAATAA GTCCGATCG GTT CGATC-GAC AAAATCGATCGTGAT YPK_3137 3429759 - 3428872 - | GTP-binding protein HSR1-related TERM 3568 3429800 - 3429780 - R 100 -10.4 -5.55769 | opp_overlap 3429780 CCTCAGAATAAAAAA GGCCACCC GAAGT GGATGGCC TGTTGGAAGAAATAA YPK_3138 3431233 - 3429851 - | hypothetical protein TERM 3569 3431335 - 3431324 - H 90 -4.4 -5.66684 | TAATGTATAAAAAAA CCAT ATTT ATGG ATTAAAAAATTAATT YPK_3139 3431788 - 3432375 + | hypothetical protein YPK_3140 3432473 - 3432679 + | phage transcriptional regulator, AlpA TERM 3570 3432930 - 3432917 - g 78 -8.1 -4.42386 | opp_overlap 3432916 3432897 GCTTGAGTCAGAAAA CCTGC CGAA GCAGG ACTTTTACGCCAGCG YPK_3141 3432816 - 3433055 + | hypothetical protein TERM 3571 3433215 - 3433186 - T 95 -12.3 -3.35813 | opp_overlap 3433191 GCCGATGTGAATGAA TTTAACGGACAGA AAAA CCTGCCCGTTAAA TAGATGAATGAAGTG YPK_3142 3433945 - 3433250 - | hypothetical protein YPK_3143 3434268 - 3435014 + | hypothetical protein TERM 3572 3436889 - 3436879 - g 87 -5.4 -5.47159 | CTTCAAGAGAAAAAA GCTT CGA AAGC CATAGCAGCTCAGTA YPK_3144 3435097 - 3437145 + | SMC (structural maintenance of chromosomes) family protein YPK_3145 3437156 - 3439078 + | hypothetical protein YPK_3146 3439343 - 3439672 + | hypothetical protein TERM 3573 3439822 - 3439808 - g 71 -2.8 -4.96848 | overlap 3439810 TTTCGCACAGAAAAA TATCTG ATG CAGAAA AGAAGATTGATTCCA TERM 3574 3442633 - 3442605 - g 78 -7.6 -4.45168 | opp_overlap 3442605 3442610 CTTGGAAAATATAAA TTACCTTTCTCA AATAA TGAGAAATGTAA TAGTTAAAGCATATC YPK_3147 3439672 - 3442944 + | TPR repeat-containing protein TERM 3575 3443448 - 3443463 + G 81 -6.2 -5.00388 | opp_overlap 3443450 TTATATATCTGAATT TACCAT TCTA ATGGTA TTTATTTTTGCTTTA YPK_3148 3443359 - 3443514 + | hypothetical protein TERM 3576 3443979 - 3443993 + T 70 -2.8 -5.04987 | opp_overlap 3443979 GCTCATACTGGAACA GCAAAA CAT TTATGC TTTTTTACGAATATT YPK_3149 3445196 - 3443988 - | integrase family protein TERM 3577 3444713 - 3444725 + g 73 -4.7 -4.70879 | overlap 3444710 TTTTGCGCAACTTGT CGAGG ACG CCACG TTTTTCGAGTTTACG TERM 3578 3445362 - 3445377 + H 73 -9 -3.54414 | opp_overlap 3445362, overlap 3445360 TCAGGCATAAAAAAA GACGTC AGTT GACGTC TATTTACTTCGAAAT TERM 3579 3445377 - 3445362 - H 100 -9 -5.64274 | opp_overlap 3445362 3445360 TCAGGCATAAAAAAA GACGTC AGTT GACGTC TATTTACTTCGAAAT YPK_3150 3445684 - 3446550 + | methenyltetrahydrofolate cyclohydrolase YPK_3151 3446565 - 3446777 + | hypothetical protein TERM 3580 3446806 - 3446792 - T 83 -11.4 -3.02263 | opp_overlap 3446791 ATAGCCGTTGTAATA GCCAGC ATT GCTGGC CTATTGAACAAAAAA TERM 3581 3446853 - 3446823 - T 100 -11.3 -5.8187 | gap 1, opp_overlap 3446823 3446825, overlap 3446825 TATTGAACAAAAAAA TCGCGGTTACTGGT AAAC ACCAG-AACCGCAA TTTTTTTAGTACTAT TERM 3582 3446823 - 3446853 + T 100 -9.1 -5.56568 | gap 1, opp_overlap 3446823 3446825, overlap 3446825 TATTGAACAAAAAAA TCGCGGTTACTGGT AAAC ACCAG-AACCGCAA TTTTTTTAGTACTAT TERM 3583 3446851 - 3446825 - T 83 -11.7 -3.0287 | gap 1, opp_overlap 3446825 3446823, overlap 3446823 TTGAACAAAAAAATC GCGGTTACTGGT AAAC ACCAG-AACCGC AATTTTTTTAGTACT TERM 3584 3446825 - 3446851 + T 83 -11.7 -2.94304 | gap 1, opp_overlap 3446823 3446825, overlap 3446823 TTGAACAAAAAAATC GCGGTTACTGGT AAAC ACCAG-AACCGC AATTTTTTTAGTACT YPK_3152 3448384 - 3446999 - | cysteinyl-tRNA synthetase TERM 3585 3447411 - 3447423 + g 71 -10.5 -2.87931 | GCGTTAGCATCAGTA CCGCG CAG CGCGG TATATAAACGCTCCA TERM 3586 3447446 - 3447432 - G 73 -7.8 -4.03413 | AGCGCGGTATATAAA CGCTCC AGT GAAGCG CGTGCCTGCTTCAGA YPK_3153 3448595 - 3449089 + | peptidyl-prolyl cis-trans isomerase cyclophilin type TERM 3587 3449145 - 3449161 + G 90 -9.4 -4.5538 | opp_overlap 3449145, overlap 3449139 CTCAGCGTTCAGGAA CCGGCA ATCAC TGCCGG TTTTCTGCATTTTAT TERM 3588 3449161 - 3449145 - g 73 -10.1 -3.14931 | opp_overlap 3449145 3449139 CTCAGCGTTCAGGAA CCGGCAA TCA CTGCCGG TTTTCTGCATTTTAT TERM 3589 3449301 - 3449320 + G 74 -6.4 -4.36914 | opp_overlap 3449304, overlap 3449304 CTGAAATCACTCCAA CAACAGGG GGTG CCCTGTTA TTTTATCCACGGGAA TERM 3590 3449304 - 3449317 + G 75 -8.1 -4.30995 | opp_overlap 3449304, overlap 3449301 AAATCACTCCAACAA CAGGG GGTG CCCTG TTATTTTATCCACGG YPK_3154 3449100 - 3449822 + | UDP-2,3-diacylglucosamine hydrolase YPK_3155 3450138 - 3450662 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit YPK_3156 3450659 - 3451723 + | phosphoribosylaminoimidazole carboxylase, ATPase subunit TERM 3591 3451754 - 3451730 - T 86 -9.9 -4.04491 | overlap 3451727 AAGTTATAACAAGAA GCGGGCGGC CTCTGCT GCTGCCCGC GAATAAAATCCACTA YPK_3157 3454196 - 3451767 - | hypothetical protein TERM 3592 3453629 - 3453646 + g 78 -7.7 -4.38712 | gap 1 AAGTCAAACGGCTAC CCGGTTGC ACC GCA-CCGG TTTTCTCAACATCAG TERM 3593 3453974 - 3453951 - G 73 -10.2 -3.24422 | opp_overlap 3453968, overlap 3453949 3453948 CATGGTCAAAAATGA GAGTTGGCGG CTAA CCGCCAGCCC CTGCTGCTTCGCTTC YPK_3158 3454879 - 3454193 - | ABC transporter related TERM 3594 3455057 - 3455018 - g 76 -2.1 -5.26316 | overlap 3455019 3455028 CTATTGGATAAAAAA TGGCA-AGCCACGCCTTCG TTAC CGAAGGTG-GTCAATGCCA GTATCAGTGGAGATA YPK_3159 3454913 - 3455485 + | lysophospholipase TERM 3595 3455579 - 3455550 - f 86 -5.7 -5.26316 | gap 1, opp_overlap 3455550, overlap 3455556 3455557 TCAGGCTAGAAAAAA GGGA-AAGCGCACT AAA AGTGCGGTAATCCC TTCGCTTACCAATCA TERM 3596 3455571 - 3455557 - f 73 -10 -3.03344 | opp_overlap 3455550, overlap 3455556 3455550 AGAAAAAAGGGAAAG CGCACT AAA AGTGCG GTAATCCCTTCGCTT YPK_3160 3455872 - 3456648 + | short-chain dehydrogenase/reductase SDR TERM 3597 3456910 - 3456940 + G 73 -7.7 -4.07647 | gap 2 TCTGGCCCGTGTCGA TTGCGATGCACAACC CAT GGT-G-GCGTCGCAA TTTGGTTTACGCTCT YPK_3161 3456725 - 3457594 + | thioredoxin domain-containing protein TERM 3598 3457645 - 3457667 + F 100 -13.4 -4.52703 | overlap 3457664 TACCATCATTTGCTA CTGCGCGGGG CAA TCCTGCGCAG TTTTATGCTGCTTTC YPK_3162 3457789 - 3458703 + | band 7 protein YPK_3163 3458706 - 3459155 + | hypothetical protein TERM 3599 3459250 - 3459205 - T 100 -14.9 -3.80114 | opp_overlap 3459212, overlap 3459196 3459206 CAGCAAGGCAGTAAA CGAACAGCCCGAATCACTTAC TCTG GTAGGTGATTCGGGTTATTCA TCACGGCAGCGTTAA TERM 3600 3459249 - 3459206 - T 100 -16.2 -2.87586 | opp_overlap 3459212, overlap 3459196 3459205 AGCAAGGCAGTAAAC GAACAGCCCGAATCACTTAC TCTG GTAGGTGATTCGGGTTATTC ATCACGGCAGCGTTA TERM 3601 3459212 - 3459243 + T 100 -18.2 -3.71848 | opp_overlap 3459196 3459206 3459205 GCAGTAAACGAACAG CCCGAATCACTTAC TCTG GTAGGTGATTCGGG TTATTCATCACGGCA YPK_3164 3459754 - 3459335 - | MerR family transcriptional regulator TERM 3602 3459616 - 3459585 - G 100 -13.8 -4.14739 | gap 1, opp_overlap 3459584 3459582 TCATCCAGTGTAAAA CCCAC-TTGCCGCGC CTG GCGCAGCAACGTGAG CTCTTCAATATGTTT TERM 3603 3459667 - 3459682 + g 100 -4.6 -6.13503 | opp_overlap 3459669, overlap 3459669 CGTTATCCGTGCGAA CAGGTG GCGT CACCAG TTTTTTTTCTTCATA TERM 3604 3459714 - 3459726 + g 87 -5.5 -5.40474 | AAACGAATGGCTTTG CTGGT TAA ACCGG TTTTTTTCGCAACAT TERM 3605 3460467 - 3460452 - g 71 -6.8 -4.15222 | opp_overlap 3460444, overlap 3460453 AGTTCCGGCAACAAA CGTGGC TTTA GCCACA AGTACGGTTTCTGAT TERM 3606 3461118 - 3461082 - g 71 -4.9 -4.59773 | overlap 3461083 3461084 GGTCAGCCTGAAAAA TGGCAGTGCGACCATGG ATA CCTTGGTCGCTCTGGGG ACAGGTGCGGCCTGG TERM 3607 3461116 - 3461084 - g 75 -11.9 -2.61004 | overlap 3461083 3461082 TCAGCCTGAAAAATG GCAGTGCGACCATGG ATA CCTTGGTCGCTCTGG GGACAGGTGCGGCCT TERM 3608 3461739 - 3461763 + G 79 -10.7 -3.45118 | overlap 3461741 ACCCCAGTTGGTCTA TACCCTGGTGG TGG CCACCACGGTG TTAATTATCGCCTGC TERM 3609 3461741 - 3461761 + G 78 -11.1 -3.29593 | overlap 3461739 CCCAGTTGGTCTATA CCCTGGTGG TGG CCACCACGG TGTTAATTATCGCCT YPK_3165 3459961 - 3462846 + | copper-translocating P-type ATPase TERM 3610 3462860 - 3462899 + F 100 -17.4 -3.2614 | gap 1, opp_overlap 3462849, overlap 3462860 AAATGCTTTCAGTGA C-CTCAATGGCGCACAATA CCG TTTTGTGCGCCATTGAGCG TTGATATCCAAAATG TERM 3611 3462860 - 3462898 + F 100 -17.6 -2.5547 | opp_overlap 3462849, overlap 3462860 AAATGCTTTCAGTGA CCTCAATGGCGCACAATA CCG TTTTGTGCGCCATTGAGC GTTGATATCCAAAAT YPK_3166 3463119 - 3463928 + | GumN family protein TERM 3612 3463955 - 3463934 - f 100 -10.9 -5.87996 | CAATCAATAAAAAAA TGGCCGATA TCAC TACCGGCCA GTCAAAGAGGAATTT YPK_3167 3464192 - 3464671 + | ybaK/ebsC protein TERM 3613 3464752 - 3464738 - g 71 -7.2 -4.10437 | overlap 3464750 CTATGAAGGAAAGAA TGAGTT TAA AACTCA TCAGACTGCTGACAA TERM 3614 3464841 - 3464815 - g 82 -10.1 -3.82218 | gap 1, opp_overlap 3464824, overlap 3464816 3464831 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 3615 3464842 - 3464816 - g 71 -10.1 -2.88849 | gap 1, opp_overlap 3464824, overlap 3464815 3464831 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_3168 3464737 - 3464994 + | hypothetical protein YPK_3169 3465008 - 3465247 + | hypothetical protein YPK_3172 3467287 - 3467745 + | putative membrane efflux protein TERM 3616 3467735 - 3467753 + F 100 -16 -3.07307 | opp_overlap 3467735 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3617 3467753 - 3467735 - f 100 -16 -4.36914 | opp_overlap 3467735 GTTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_3173 3467866 - 3468324 + | transposase IS200-family protein TERM 3618 3468398 - 3468430 + F 100 -11.3 -4.20531 | opp_overlap 3468405, overlap 3468402 3468404 3468405 CCTTATAGGCGCATA TGAAAAACCTCCGGC TAT GCCGGAGGATATTTA TTTTGGCTCAATCTG TERM 3619 3468402 - 3468426 + F 100 -9.9 -4.68908 | opp_overlap 3468405, overlap 3468398 3468404 3468405 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTTTGGCTCAA TERM 3620 3468404 - 3468424 + F 100 -12.5 -3.95475 | opp_overlap 3468405, overlap 3468402 3468398 3468405 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTTTGGCTC TERM 3621 3468423 - 3468405 - f 100 -16 -4.8048 | opp_overlap 3468404 3468402 3468398 3468405 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGCT TERM 3622 3468405 - 3468423 + F 100 -16 -2.962 | opp_overlap 3468405, overlap 3468404 3468402 3468398 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTTTGGCT TERM 3623 3468790 - 3468805 + G 71 -2.6 -5.00196 | TCGGTACAAAGTGCC CAGATA CACC TATTTG TTTTCTTATTTGCGG YPK_3174 3468433 - 3469212 + | putative membrane efflux protein TERM 3624 3470479 - 3470490 + G 83 -7.2 -4.68908 | opp_overlap 3470478 AGTTTGGCACAAATC GGCG AGTT CGCC TTTATTTTGGCTGGG YPK_3175 3469447 - 3471138 + | potassium efflux system protein TERM 3625 3471215 - 3471181 - T 100 -13.6 -5.06816 | opp_overlap 3471183 3471184, overlap 3471184 ACTCTGTAATAAAAA CAATCAGGGCCAGCTT ACT ATGCTGGCCCTGACTT ATATCCCGCGTCTAC TERM 3626 3471183 - 3471213 + T 100 -14 -3.49102 | opp_overlap 3471181 3471184, overlap 3471184 TCTGTAATAAAAACA ATCAGGGCCAGCTT ACT ATGCTGGCCCTGAC TTATATCCCGCGTCT TERM 3627 3471212 - 3471184 - T 100 -17.5 -4.63592 | opp_overlap 3471183 3471184, overlap 3471181 CTGTAATAAAAACAA TCAGGGCCAGCTT ACT ATGCTGGCCCTGA CTTATATCCCGCGTC TERM 3628 3471184 - 3471212 + T 100 -17.5 -2.6914 | opp_overlap 3471184 3471181, overlap 3471183 CTGTAATAAAAACAA TCAGGGCCAGCTT ACT ATGCTGGCCCTGA CTTATATCCCGCGTC YPK_3176 3472539 - 3471235 - | inosine kinase TERM 3629 3471683 - 3471672 - G 71 -7.2 -4.03413 | overlap 3471673 ATCCCGCCATATAAA GCCC GCTG GGGC CTGCGGTACATAACA TERM 3630 3472725 - 3472689 - R 74 -6.6 -4.39426 | gap 1, opp_overlap 3472694, overlap 3472694 TACAGGGCGATAAAA CAGAACGGCCAGATGAG AAAC CTCACCCAGCCGTTA-G ATAAATTCGTTTAAA TERM 3631 3472721 - 3472694 - R 100 -12 -4.02581 | opp_overlap 3472694, overlap 3472689 GGCGATAAAACAGAA CGGCCAGATGAG AAAC CTCACCCAGCCG TTAGATAAATTCGTT YPK_3177 3473894 - 3472743 - | lipopolysaccharide biosynthesis protein YPK_3178 3475315 - 3473942 - | phosphomannomutase YPK_3179 3476578 - 3475619 - | NAD-dependent epimerase/dehydratase YPK_3180 3477675 - 3476926 - | glycosyl transferase family protein TERM 3632 3477246 - 3477223 - G 73 -5.3 -4.52857 | opp_overlap 3477223 3477222 ATTTTTCATATAAAA GGTTGTATG TGGCGG CATCCAACC ATATTTATATTTACT TERM 3633 3477705 - 3477695 - R 84 -2.6 -5.65927 | opp_overlap 3477695, overlap 3477688 TACCTAAATAAAAAA TTTA AGA TAAA TCCGTTATTCTAAAC TERM 3634 3477723 - 3477706 - R 70 -5.6 -4.26305 | opp_overlap 3477706 AAAATTTAAGATAAA TCCGTT ATTCTA AACGGA TAATATCATCTTCAC YPK_3181 3479098 - 3477710 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YPK_3182 3480271 - 3479306 - | NAD-dependent epimerase/dehydratase YPK_3183 3481398 - 3480277 - | GDP-mannose 4,6-dehydratase YPK_3184 3482427 - 3481414 - | glycosyl transferase group 1 YPK_3185 3483706 - 3482447 - | O-antigen biosynthesis protein Wxy YPK_3186 3485076 - 3483769 - | LPS side chain defect: putative O-antigen transferase TERM 3635 3483997 - 3483974 - G 74 -2.6 -5.00884 | gap 1, overlap 3483978 AGCGGTCGTAAAAAA TTCA-TACTTT GTA AAAGCATTGAA AACGTTTCAGACCAA TERM 3636 3485179 - 3485151 - R 74 -6.3 -4.48903 | opp_overlap 3485151, overlap 3485160 CAAAATATATTAAAA TAAAAATAATTTT TTA AAAATGATTTTTA TTAATTTTACAAAAA YPK_3187 3486205 - 3485243 - | glycosyl transferase family protein TERM 3637 3485346 - 3485333 - G 77 -3.9 -5.03145 | TAACTTTTTAAAAAA GAAAA ATGG TTTTC CTGGTGAAGAGTTTT TERM 3638 3485409 - 3485423 + g 79 -3.6 -5.31072 | ATATAAGCCATAAAT GGTATA CTA TATATC TTTTTATTGTGTTCT YPK_3188 3487544 - 3486687 - | NAD-dependent epimerase/dehydratase TERM 3639 3487570 - 3487555 - R 100 -9 -6.02914 | opp_overlap 3487555 3487554 3487557 TTCATATAAAAAAAA GAGGCA GTGT TGCCTC CTTGCTCCTGTTAAA YPK_3189 3488894 - 3487581 - | DegT/DnrJ/EryC1/StrS aminotransferase YPK_3190 3489985 - 3488912 - | CDP-glucose 4,6-dehydratase YPK_3191 3490763 - 3489990 - | glucose-1-phosphate cytidylyltransferase TERM 3640 3490785 - 3490800 + r 72 -6.2 -4.25256 | CTCCATTACGTATTA CTTTGA TCTC TCAAAG TTATTTTGATGGCAC YPK_3192 3491790 - 3490801 - | oxidoreductase FAD/NAD(P)-binding subunit TERM 3641 3491226 - 3491212 - G 86 -7.8 -4.90266 | opp_overlap 3491212 TTCACGAACGAAAAA GGTCCC TTG AGGACC TTCAATTCGTAAAAG TERM 3642 3491870 - 3491858 - R 80 -2.7 -5.53288 | CTTAAGTCAAAAAAA TTCAG TGA CTAAA ATAGAAACAAAAAAG YPK_3193 3493350 - 3492388 - | ferrochelatase TERM 3643 3493424 - 3493394 - R 100 -17 -3.59979 | opp_overlap 3493401, overlap 3493413 3493414 CCTTCTTACTTGAAA TAGCTAAGGCGGCC TTA AACCGCCTTAGCTA TAAGGCCATCCAGAA YPK_3194 3494084 - 3493440 - | nucleoside-triphosphate--adenylate kinase TERM 3644 3494270 - 3494298 + r 100 -6.8 -5.66684 | gap 1, opp_overlap 3494270 AGGTACAATAAAAAA CACCCTTG-GCAA TACG TTGAACAAGGGTG TTTTTTTATCGATTA TERM 3645 3494298 - 3494270 - R 91 -6.8 -5.56673 | gap 1, opp_overlap 3494270 AGGTACAATAAAAAA CACCCTTG-GCAA TACG TTGAACAAGGGTG TTTTTTTATCGATTA YPK_3195 3496185 - 3494311 - | heat shock protein Hsp90 TERM 3646 3495987 - 3495956 - G 74 -9.6 -3.57792 | opp_overlap 3495954, overlap 3495983 TCACTCAGGGTTAAA GTACGTTTCTCTTT ATCA AAAGATAAACGCAC TCTCAGTTCGCCATC YPK_3196 3496952 - 3496377 - | recombination protein RecR TERM 3647 3497006 - 3497037 + r 73 -3.6 -5.02287 | CATCTTAAAGCCTGG TGGCAATTGCATCC CATT GGATACAGAGGCCA TTTTCTCTTTTTGTG YPK_3197 3497314 - 3496982 - | hypothetical protein TERM 3648 3497241 - 3497253 + g 75 -3.4 -5.17353 | TTGGCGACTTCTTCC TGCA TCTGC TGCA TTTTTTCCTGCATCT YPK_3198 3499346 - 3497370 - | DNA polymerase III, subunits gamma and tau TERM 3649 3497871 - 3497897 + g 76 -7.3 -4.46675 | overlap 3497861 TTGATTTTTCGCGGT CCAGCGATAAG CTTCT TTTTTCGCTGG TTTCTTCTCTTCCGT TERM 3650 3497974 - 3498015 + g 100 -10 -5.58179 | overlap 3497943 3497980 AAACGCTCCAGTGCT GAGTTTGCCGGCCGCGCT TTTCCT GGCGCCGCCGGCTCATTC TTTTTTGTTGTGGTC TERM 3651 3497980 - 3498009 + g 93 -14.2 -3.2756 | overlap 3497974 TCCAGTGCTGAGTTT GCCGGCCGCGCT TTTCCT GGCGCCGCCGGC TCATTCTTTTTTGTT TERM 3652 3499852 - 3499838 - R 75 -5.7 -4.58424 | TATGACGATATAAAA CCAGA GTTTG TCTGG CTGGAATACCTTAAC YPK_3199 3500565 - 3500002 - | adenine phosphoribosyltransferase YPK_3200 3500963 - 3500829 - | hypothetical protein YPK_3201 3501022 - 3501186 + | hypothetical protein TERM 3653 3501232 - 3501217 - f 76 -7.6 -4.15222 | opp_overlap 3501216 ACTTTCGTCAAGAAA GCGTTA TCAT TAACGC ATGTAGTGCCGACCA TERM 3654 3501793 - 3501779 - g 73 -7.8 -3.9777 | TCCAAGACCGAGAAA GCCAAC TGG GTCGGC AGAGTTTGTTAGTTG YPK_3202 3501385 - 3501921 + | primosomal replication priB and priC YPK_3203 3502092 - 3502247 + | hypothetical protein YPK_3204 3505932 - 3502570 - | MscS mechanosensitive ion channel YPK_3205 3506581 - 3506228 - | DsrE family protein YPK_3206 3507250 - 3506594 - | TetR family transcriptional regulator TERM 3655 3507137 - 3507109 - G 76 -9.5 -3.74747 | overlap 3507112 TGAAGTGCCAGTAAA TAGCGCCTCGGGT TAC ACCCGCAGCGATA GCAATATCGGTAAGA TERM 3656 3507134 - 3507112 - G 72 -11.2 -2.66873 | overlap 3507109 AGTGCCAGTAAATAG CGCCTCGGGT TAC ACCCGCAGCG ATAGCAATATCGGTA TERM 3657 3507424 - 3507406 - g 78 -6 -4.77438 | ATCTATGAGCAAAAA CAGAGG GGTAATG CCTCTG GCTGCAATTCTGGTA YPK_3207 3507395 - 3508582 + | RND family efflux transporter MFP subunit TERM 3658 3508725 - 3508686 - g 88 -12.3 -3.78775 | CTTGCGATCATGAAA TTACCAGTAGCGCAATA TCCGAC CATTGCGCCACCGGCAA TTACAATTGCCGCCA YPK_3208 3508599 - 3511751 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 3659 3511799 - 3511784 - f 100 -11.8 -3.83998 | opp_overlap 3511784 TCATTTCATACTAAA GGCCGC GCAA GCGGCC TTTTTATTGTGCCCA TERM 3660 3511784 - 3511799 + F 100 -11.8 -5.18726 | opp_overlap 3511784 TCATTTCATACTAAA GGCCGC GCAA GCGGCC TTTTTATTGTGCCCA TERM 3661 3511838 - 3511820 - f 100 -16 -4.37092 | opp_overlap 3511820 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3662 3511820 - 3511838 + F 100 -16 -3.07307 | opp_overlap 3511820 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_3209 3511951 - 3512409 + | transposase IS200-family protein TERM 3663 3512487 - 3512511 + F 93 -9.9 -4.2461 | opp_overlap 3512490, overlap 3512489 3512490 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGCTGAGCGT TERM 3664 3512489 - 3512509 + F 100 -12.5 -3.72374 | opp_overlap 3512490, overlap 3512487 3512490 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGCTGAGC TERM 3665 3512490 - 3512508 + F 100 -16 -2.82942 | opp_overlap 3512490, overlap 3512489 3512487 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCTGAG TERM 3666 3512508 - 3512490 - f 100 -16 -4.8048 | opp_overlap 3512490 3512489 3512487 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGCTGAG YPK_3210 3512647 - 3512907 + | ribosomal protein L31 YPK_3211 3512923 - 3513066 + | ribosomal protein L36 TERM 3667 3513159 - 3513187 + F 88 -6.7 -5.24551 | gap 1, opp_overlap 3513159 CATCAGTCCCCAAAA GGCCCTTTGTGC ACTAAC GC-CAACGGGCC TTTTTATTCATTTGC TERM 3668 3513187 - 3513159 - f 73 -7.4 -4.10161 | gap 1, opp_overlap 3513159 CATCAGTCCCCAAAA GGCCCTTTGTGCA CTAA CGC-CAACGGGCC TTTTTATTCATTTGC TERM 3669 3514116 - 3514106 - g 75 -5.4 -4.8048 | overlap 3514090 3514091 TCTTGAGATTAAAAA TCTC AAA GAGA ACCAGTATTCAATGA YPK_3212 3513930 - 3514283 + | hypothetical protein YPK_3213 3514442 - 3514810 + | hypothetical protein YPK_3214 3514859 - 3515062 + | hemolysin expression modulating family protein TERM 3670 3515398 - 3515382 - f 76 -6.6 -4.46652 | TAAATAAAAATCAAA CCATTC GTTCA GAATGG GAGGAATCTTATTTT TERM 3671 3515468 - 3515457 - f 79 -3 -5.27335 | TGCCGGAAATAAAAA TCTA CTGA TAGA GAGCGTTCACGACAA YPK_3215 3515794 - 3516357 + | methylated-DNA--protein-cysteine methyltransferase YPK_3216 3517014 - 3516493 - | putative lipoprotein TERM 3672 3517435 - 3517419 - g 74 -6.5 -4.41616 | ATGCTGCGAAACAAA CCGTCCC CGC AGAACGG ACTGTTCACTCATTT YPK_3217 3517271 - 3518131 + | acyl-CoA thioesterase II TERM 3673 3518182 - 3518227 + T 72 -7.5 -4.04089 | opp_overlap 3518187 3518189 3518192 3518194, overlap 3518190 3518192 CAGTTGATGAATCAA TGAAATAGCACAGGGGCGATG TCAC CATCGCCCCTGTAGTTCATCA TTATTATGTATTTTT TERM 3674 3518222 - 3518187 - T 100 -12.6 -4.01419 | opp_overlap 3518182 3518190 3518192, overlap 3518189 3518192 3518194 GATGAATCAATGAAA TAGCACAGGGGCGATG TCAC CATCGCCCCTGTAGTT CATCATTATTATGTA TERM 3675 3518220 - 3518189 - T 100 -15.2 -3.59031 | opp_overlap 3518182 3518190 3518192, overlap 3518187 3518192 3518194 TGAATCAATGAAATA GCACAGGGGCGATG TCAC CATCGCCCCTGTAG TTCATCATTATTATG TERM 3676 3518190 - 3518220 + T 100 -16.3 -3.34242 | gap 1, opp_overlap 3518189 3518187 3518192 3518194, overlap 3518182 3518192 GAATCAATGAAATAG C-ACAGGGGCGATG TCAC CATCGCCCCTGTAG TTCATCATTATTATG TERM 3677 3518217 - 3518192 - T 100 -19.1 -2.906 | opp_overlap 3518190 3518182 3518192, overlap 3518189 3518187 3518194 ATCAATGAAATAGCA CAGGGGCGATG TCAC CATCGCCCCTG TAGTTCATCATTATT TERM 3678 3518192 - 3518217 + T 100 -19.1 -2.8293 | opp_overlap 3518192 3518189 3518187 3518194, overlap 3518190 3518182 ATCAATGAAATAGCA CAGGGGCGATG TCAC CATCGCCCCTG TAGTTCATCATTATT TERM 3679 3518215 - 3518194 - T 100 -15.9 -2.9955 | opp_overlap 3518192 3518190 3518182, overlap 3518192 3518189 3518187 CAATGAAATAGCACA GGGGCGATG TCAC CATCGCCCC TGTAGTTCATCATTA YPK_3218 3518429 - 3518337 - | hypothetical protein YPK_3219 3519684 - 3518392 - | ammonium transporter YPK_3220 3520059 - 3519721 - | nitrogen regulatory protein P-II TERM 3680 3519853 - 3519878 + g 74 -4.1 -5.00138 | gap 1 AATCACTTCGTCTAA TTGATCATCGGC GAT GGCGAT-ATCAA TTTTTACTTTGGGTA TERM 3681 3520502 - 3520481 - R 100 -13.7 -4.22554 | TGAGTCAATAAATAA CGTGGGGCG ACAT CACCCCACG CGTGCTGCTTAACTC YPK_3221 3522334 - 3520511 - | ABC transporter related TERM 3682 3520745 - 3520760 + g 75 -3.2 -5.0538 | opp_overlap 3520747 3520748, overlap 3520747 AAGGCGATGAGCAAT AACCAC CAGC GTGGTA TTTTTTCGAATCACC YPK_3222 3524093 - 3522327 - | ABC transporter related TERM 3683 3523481 - 3523500 + g 86 -12.2 -3.61398 | opp_overlap 3523477 TCATGCGAATACTGG TCAGGCTC TCTT GAGCCTGA TTATTAAGCAAAGAA YPK_3223 3524656 - 3524195 - | AsnC family transcriptional regulator TERM 3684 3525135 - 3525146 + G 72 -5.8 -4.43844 | AATCACCTTCTACTG TGGC CGTT GCCA TTTTGTCGATCATGC YPK_3224 3524782 - 3525822 + | pyridoxal-5'-phosphate-dependent protein beta subunit TERM 3685 3525982 - 3525946 - T 100 -10.3 -4.74013 | TTCAAAGAGATAAAA GCGGTTTGTCAGC TAGGCATGAAC ACTGACAAACCGC CTACGGAAGAAAAAA TERM 3686 3526014 - 3525999 - T 100 -6.1 -5.8187 | TACGGAAGAAAAAAA CCGGA TGGTTC TCCGG CTGGCTAATAGCTAT YPK_3225 3526855 - 3526034 - | Cof-like hydrolase TERM 3687 3528470 - 3528452 - g 76 -2.4 -5.19212 | overlap 3528453 ACCAGCAGCAAAAAA CGCTGA CCTTCAT TCAGCA GATAGAAAGCGCGCC YPK_3226 3526960 - 3528663 + | extracellular solute-binding protein YPK_3227 3528952 - 3529650 + | exsB protein YPK_3228 3530143 - 3529736 - | thioesterase superfamily protein TERM 3688 3530376 - 3530333 - R 83 -8.8 -4.08945 | gap 1, opp_overlap 3530364 3530365 ATTATGTTGGTAAAA GCCGCCAGACCAATACCTACC GAT GGCCAGCACC-GCCTGGCGGC TTGATTTACCAACTT YPK_3229 3530943 - 3530497 - | helix-hairpin-helix repeat-containing competence protein ComEA TERM 3689 3531025 - 3531048 + r 100 -15.4 -4.68384 | opp_overlap 3531029, overlap 3531029 AGATCACAGATATGC GAAAGGTCGC CAAA GCGACCTTTC TTTTATTACATCGGT TERM 3690 3531029 - 3531044 + r 100 -10.4 -4.88795 | opp_overlap 3531029, overlap 3531025 CACAGATATGCGAAA GGTCGC CAAA GCGACC TTTCTTTTATTACAT TERM 3691 3531044 - 3531029 - R 82 -10.4 -3.66139 | opp_overlap 3531029 3531025 CACAGATATGCGAAA GGTCGC CAAA GCGACC TTTCTTTTATTACAT YPK_3230 3532969 - 3531083 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3692 3531816 - 3531826 + g 73 -4.6 -4.81083 | opp_overlap 3531813 TGTAGCGCATAATAA GCGT CAA GCGC TTTTTCCTGCTTAAG TERM 3693 3533185 - 3533166 - R 100 -10 -5.86332 | opp_overlap 3533165 3533166 3533179 CTAAGCGAAAAAAAA GCGCATCA TAAA CGATGCGC CTTGTATCTTACCTT TERM 3694 3533166 - 3533185 + r 70 -9.3 -2.81609 | opp_overlap 3533166, overlap 3533165 3533179 CTAAGCGAAAAAAAA GCGCATC ATAAAC GATGCGC CTTGTATCTTACCTT YPK_3231 3533542 - 3533270 - | histone family protein DNA-binding protein TERM 3695 3533726 - 3533699 - R 72 -6.3 -4.25873 | opp_overlap 3533699 GCGGCACAAAAAATA GCTGGCAAGCA GGATTT CACTTACCAGC ATTAGTTTTATCAAT YPK_3232 3536114 - 3533760 - | ATP-dependent protease La TERM 3696 3534860 - 3534878 + g 73 -7.4 -4.20712 | opp_overlap 3534860 3534858, overlap 3534854 CATCTAATAGGAAGA GTGGGTTT TTC ACACCCAC TTTTGCCATCTTCTG TERM 3697 3535662 - 3535672 + g 91 -3.2 -5.83226 | opp_overlap 3535654 CAGCGAAGCCAGCAC TTCC GGC GGGA TTTTTTTGTTCAGTT TERM 3698 3536171 - 3536157 - R 72 -10 -2.7752 | opp_overlap 3536157, overlap 3536156 CAGATTACTGGAAAT CTCGTG AAA CACGAG TCATCACGAGTTTCA TERM 3699 3536257 - 3536275 + r 100 -13.2 -3.44527 | opp_overlap 3536257 GCGAGGAAAAAGAAA TGGGGGAT AAA ATCCCCCA TTGTCATACTAACTG TERM 3700 3536275 - 3536257 - R 100 -13.2 -4.91852 | opp_overlap 3536257 GCGAGGAAAAAGAAA TGGGGGAT AAA ATCCCCCA TTGTCATACTAACTG YPK_3233 3537580 - 3536309 - | ATP-dependent Clp protease, ATP-binding subunit ClpX YPK_3234 3538409 - 3537786 - | ATP-dependent Clp protease, proteolytic subunit ClpP TERM 3701 3538237 - 3538224 - G 77 -6.7 -4.56597 | opp_overlap 3538224 CTCGGCTTCCAAAAA CAGCA TCTG TGCTG TGATTAGGTTAGCCA TERM 3702 3538816 - 3538791 - R 100 -11.1 -5.50723 | opp_overlap 3538791 TTACCAAAAGAAAAA GCCCGTGACCA ATAA TGGCGACGGGC TTAATCAATCAAAAT TERM 3703 3538853 - 3538831 - R 95 -9.2 -4.4959 | overlap 3538833 CTTAATCAATCAAAA TACTGAATGG GTC CCATCCAGCA TCATGCGCTGAAAAA TERM 3704 3538851 - 3538833 - R 81 -9.6 -3.85043 | overlap 3538831 TAATCAATCAAAATA CTGAATGG GTC CCATCCAG CATCATGCGCTGAAA YPK_3235 3540175 - 3538871 - | trigger factor YPK_3236 3540433 - 3540248 - | hypothetical protein TERM 3705 3540525 - 3540500 - R 91 -10.5 -4.12532 | opp_overlap 3540506, overlap 3540502 3540506 TCGCCTATACAGAAA CACAAACGGCC CTAG AGCCGTTTGTA AAATTCTCATCTACT TERM 3706 3540523 - 3540502 - R 84 -10.9 -3.65996 | opp_overlap 3540506, overlap 3540500 3540506 GCCTATACAGAAACA CAAACGGCC CTAG AGCCGTTTG TAAAATTCTCATCTA TERM 3707 3540519 - 3540506 - R 73 -5.9 -4.44187 | opp_overlap 3540506, overlap 3540502 3540500 ATACAGAAACACAAA CGGCC CTAG AGCCG TTTGTAAAATTCTCA YPK_3237 3540912 - 3540592 - | BolA family protein YPK_3238 3541261 - 3541839 + | hypothetical protein TERM 3708 3541943 - 3541915 - f 73 -8.2 -3.65991 | gap 1, opp_overlap 3541913 AGTTGCTCAACAGAA TGCTCTGCC-CGA TACC TTGCGGCAGAGCA GGTAGATTTATTATG TERM 3709 3542162 - 3542180 + G 75 -5.9 -4.58395 | overlap 3542165 TTGGTCCCCGCTGAT GGACCGC TACAC GCCGTCC TTTTTAGGGCGTCGG YPK_3239 3541956 - 3543434 + | AmpG-related permease TERM 3710 3543457 - 3543478 + F 89 -3.6 -5.59879 | CATAAGTGACATAAA GCCGGTGC TTGTGT GAACTGGC TTTTTTGTGTTTATC TERM 3711 3543566 - 3543580 + F 75 -2.1 -5.40474 | TAAATCACAACTTTT CATGT TTGTT GCATG TTTTTTTAAAAAAAT YPK_3240 3543719 - 3543832 + | hypothetical protein TERM 3712 3544529 - 3544494 - f 72 -7.1 -4.04295 | opp_overlap 3544494 3544495 3544497, overlap 3544497 CTAACTATAACTAAA TGATTCCGAGGTG-CCT ATTT AGGACACCTCGAAAT-A TATTTTAATTTACCT TERM 3713 3544527 - 3544497 - f 83 -11.3 -3.05266 | gap 1, opp_overlap 3544495 3544494 3544497, overlap 3544494 ACTATAACTAAATGA TTCCGAGGTG-CCT ATTT AGGACACCTCGAAA TATATTTTAATTTAC TERM 3714 3544497 - 3544527 + F 73 -9.1 -3.51998 | gap 1, opp_overlap 3544497 3544494, overlap 3544495 3544494 ACTATAACTAAATGA TTCCGAGGTG-CCT ATTT AGGACACCTCGAAA TATATTTTAATTTAC TERM 3715 3544724 - 3544709 - f 80 -9 -3.95674 | AAAATTGCCAAATAA GGTCAC ATCT GTGACC CCCTTAACATAAAGT TERM 3716 3545739 - 3545724 - g 74 -2.6 -5.09173 | gap 1, overlap 3545715 3545712 3545735 GAACATGCCAAAAAA TGGCCAT GAC AT-GCCA AAAGGCATGGATATG YPK_3241 3544852 - 3545808 + | ubiquinol oxidase, subunit II YPK_3242 3545813 - 3547804 + | cytochrome o ubiquinol oxidase, subunit I TERM 3717 3547857 - 3547817 - g 82 -12 -3.17714 | gap 2, overlap 3547823 3547827 TGAAACTCTGACTAA CCACAACGT-A-GCCCATGC AGA GCATGGGCATCACGATGCGG GAGCGACGAAAGTAT TERM 3718 3547851 - 3547823 - g 71 -9 -3.54029 | gap 2, overlap 3547817 3547827 TCTGACTAACCACAA CGT-A-GCCCATGC AGA GCATGGGCATCACG ATGCGGGAGCGACGA TERM 3719 3547845 - 3547827 - g 90 -14.6 -2.63614 | overlap 3547823 3547817 ACTAACCACAACGTA GCCCATGC AGA GCATGGGC ATCACGATGCGGGAG TERM 3720 3548095 - 3548082 - g 71 -6.7 -4.15854 | AAAGGGAGTGTAAAA CAGGT CAAT ACCTG GTTGGGCTTCACCTT YPK_3243 3547794 - 3548408 + | cytochrome o ubiquinol oxidase, subunit III YPK_3244 3548408 - 3548740 + | cytochrome o ubiquinol oxidase subunit IV YPK_3245 3548754 - 3549641 + | protoheme IX farnesyltransferase TERM 3721 3549710 - 3549672 - f 100 -11 -4.48299 | opp_overlap 3549676, overlap 3549676 TGAGAGTGAAATAAA TCAAGTGGCTGGCAGGAA TCG CTCTTGCCAGCCACTTTG TATTTGTTCCCTGTT TERM 3722 3549706 - 3549676 - f 100 -16.2 -3.76486 | opp_overlap 3549676, overlap 3549672 AGTGAAATAAATCAA GTGGCTGGCAGGAA TCG CTCTTGCCAGCCAC TTTGTATTTGTTCCC TERM 3723 3549676 - 3549706 + F 100 -17.7 -4.46072 | opp_overlap 3549676 3549672 AGTGAAATAAATCAA GTGGCTGGCAGGA ATCGC TCTTGCCAGCCAC TTTGTATTTGTTCCC YPK_3246 3550125 - 3551489 + | major facilitator transporter TERM 3724 3551552 - 3551515 - T 76 -7.7 -4.13014 | opp_overlap 3551519, overlap 3551519 TTTATAGGGCCAAAA TTAAGGGGCAAAGACAT GAAA AAGCCGTTGCCCCTTTA GTCGTTATACCGTTT TERM 3725 3551548 - 3551519 - T 73 -8.5 -3.67622 | opp_overlap 3551519, overlap 3551515 TAGGGCCAAAATTAA GGGGCAAAGACAT GAAA AAGCCGTTGCCCC TTTAGTCGTTATACC YPK_3247 3552104 - 3551613 - | hypothetical protein YPK_3248 3552336 - 3553247 + | 2-dehydropantoate 2-reductase TERM 3726 3553780 - 3553751 - gT 76 -7.9 -4.19974 | gap 1, opp_overlap 3553752, overlap 3553752 AAAAGGCGGAAGAAA TTGCCTGGCAGCTA GTG TTGCCGCCAGG-AA TTTATAATTATCGGG TERM 3727 3553752 - 3553780 + GT 73 -7.3 -4.1021 | opp_overlap 3553751 3553752 AAAGGCGGAAGAAAT TGCCTGGCAGCTA GTG TTGCCGCCAGGAA TTTATAATTATCGGG TERM 3728 3553780 - 3553752 - gT 72 -9.5 -3.109 | opp_overlap 3553752, overlap 3553751 AAAGGCGGAAGAAAT TGCCTGGCAGCTA GTG TTGCCGCCAGGAA TTTATAATTATCGGG YPK_3249 3553210 - 3553800 + | DJ-1 family protein YPK_3250 3555319 - 3553868 - | thiamine biosynthesis/tRNA modification protein ThiI TERM 3729 3555715 - 3555697 - g 73 -8.2 -3.96148 | CCGCTTCACCAGAAA TCAAAGCC GCC AGCTTTGA AACATCACTCAGTGA YPK_3251 3555669 - 3555923 + | exodeoxyribonuclease VII, small subunit TERM 3730 3556284 - 3556311 + G 81 -6.2 -4.90471 | gap 1 GGCCCACGCTATTTT GGCCGGTG-ATGC ACT GCAAACGCTGGCC TTTTCTATTTTGGCT YPK_3252 3555928 - 3556848 + | polyprenyl synthetase YPK_3253 3557004 - 3558863 + | deoxyxylulose-5-phosphate synthase TERM 3731 3558965 - 3558936 - T 100 -12.3 -4.13973 | opp_overlap 3558940, overlap 3558940 AGATATCAGAAACAA TAAAGGCATAGCC CGTG GGTTATGCCTTTA CGTGATAGTCTCTCT TERM 3732 3558940 - 3558961 + T 84 -10.9 -3.6959 | opp_overlap 3558936 3558940 ATCAGAAACAATAAA GGCATAGCC CGTG GGTTATGCC TTTACGTGATAGTCT TERM 3733 3558961 - 3558940 - T 100 -8.7 -4.63952 | opp_overlap 3558940, overlap 3558936 ATCAGAAACAATAAA GGCATAGCC CGTG GGTTATGCC TTTACGTGATAGTCT YPK_3254 3559489 - 3559004 - | phosphatidylglycerophosphatase A YPK_3255 3560471 - 3559482 - | thiamine-monophosphate kinase TERM 3734 3560500 - 3560534 + r 100 -21.8 -2.84059 | opp_overlap 3560502 3560506, overlap 3560502 3560506 AAATGTTAACTGATA TATAAATTAAGGCCGG ATA CCGGCCTTAATTTATA TCGTTAATGTATATC TERM 3735 3560532 - 3560502 - R 100 -20 -2.95091 | opp_overlap 3560500 3560502 3560506, overlap 3560506 ATGTTAACTGATATA TAAATTAAGGCCGG ATA CCGGCCTTAATTTA TATCGTTAATGTATA TERM 3736 3560502 - 3560532 + r 100 -20 -2.96235 | opp_overlap 3560502 3560506, overlap 3560500 3560506 ATGTTAACTGATATA TAAATTAAGGCCGG ATA CCGGCCTTAATTTA TATCGTTAATGTATA TERM 3737 3560506 - 3560528 + r 100 -16.4 -4.14541 | opp_overlap 3560502 3560506, overlap 3560502 3560500 TAACTGATATATAAA TTAAGGCCGG ATA CCGGCCTTAA TTTATATCGTTAATG TERM 3738 3560528 - 3560506 - R 100 -16.4 -4.15061 | opp_overlap 3560506 3560502 3560500, overlap 3560502 TAACTGATATATAAA TTAAGGCCGG ATA CCGGCCTTAA TTTATATCGTTAATG YPK_3256 3561128 - 3560712 - | NusB antitermination factor TERM 3739 3560966 - 3560926 - G 73 -3.3 -4.88918 | opp_overlap 3560938, overlap 3560928 TGACGGGAAAGAAAA GGTGCCATTAATGCATC CAGAGAT GCTGCATTAACCGCAAC CCCTGACAGCAATTC TERM 3740 3561038 - 3561054 + g 73 -5.1 -4.57569 | opp_overlap 3561041, overlap 3561041 ACAGGAACTGTAATT CAACATC AGC GATGTCG TTTTTAGACAACTGC YPK_3257 3561619 - 3561149 - | 6,7-dimethyl-8-ribityllumazine synthase YPK_3258 3562864 - 3561755 - | riboflavin biosynthesis protein RibD YPK_3259 3563445 - 3562996 - | ATP-cone domain-containing protein YPK_3260 3564847 - 3563516 - | hypothetical protein TERM 3741 3563653 - 3563667 + g 83 -8.6 -4.54608 | CTTTGATGCTCGCAT CCAGTA ATT TACTGG TTTCTGTTTCTTTTA TERM 3742 3564073 - 3564055 - G 79 -11.8 -3.26807 | opp_overlap 3564053, overlap 3564053 ATGATTTAAAAACCA CAGACTGA TTT TCAGTCTG ACTCTCTATCGTTCG TERM 3743 3564325 - 3564342 + g 71 -6.3 -4.13945 | opp_overlap 3564327, overlap 3564310 GGGATCGCTGCAACT TAGCGGA TTCC TTCGCTA TTTTCGGGTAAGCCT TERM 3744 3565042 - 3565065 + r 76 -11.1 -2.51045 | opp_overlap 3565042, overlap 3565041 3565039 3565037 TTGCTGATAAAAAAA CCCTGAAAC CAACAA GTTTCAGGG CTATCTTATACATCG TERM 3745 3565065 - 3565042 - R 100 -11.8 -5.60993 | opp_overlap 3565042 3565041 3565039 3565037 TTGCTGATAAAAAAA CCCTGAAACC AACA AGTTTCAGGG CTATCTTATACATCG YPK_3261 3566068 - 3565100 - | protein-export membrane protein SecF YPK_3262 3567893 - 3566079 - | protein-export membrane protein SecD TERM 3746 3567787 - 3567817 + g 77 -10.5 -3.53091 | gap 1 TGGACCAGCGTTGTC TCACTGGCG-GCGA TTCC TCGCGCACCAGTGA TTTGAACAGCCGGAT YPK_3263 3568289 - 3567954 - | preprotein translocase, YajC subunit TERM 3747 3568215 - 3568233 + g 79 -9.6 -3.90112 | opp_overlap 3568205 TACTACCAGCATGAT CAGCATGG AGG TCATGCTG TTTCCTTGAGCCGGA YPK_3264 3569525 - 3568401 - | queuine tRNA-ribosyltransferase TERM 3748 3569037 - 3569010 - G 74 -9.1 -3.74872 | gap 1, opp_overlap 3569004 ATTCAGCTCATCAAA GCGCTG-GCGGC TACGG GCAGCCCAGCGC AGTGACATTTCCATC TERM 3749 3569493 - 3569472 - G 71 -9.3 -3.57462 | opp_overlap 3569486, overlap 3569442 CACGCCACGCTCAAA CACCAGCCG ACCA CGGCGGGCG CGCCCATCAGTTTTT TERM 3750 3569534 - 3569560 + r 81 -7.4 -4.68593 | ACTTCACATAACCTC CAGCATCAGA GAAACAG TCTGATGTTG TTTTTGCCTGATCAC YPK_3265 3570688 - 3569618 - | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase YPK_3266 3570864 - 3571472 + | (Acyl-carrier-protein) phosphodiesterase TERM 3751 3571669 - 3571659 - f 73 -5.4 -4.67641 | ACTGCAAAACTAAAA TCGT TTA ACGA TAGGCAAAAACTATC YPK_3267 3571791 - 3572393 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YPK_3268 3572499 - 3572383 - | hypothetical protein TERM 3752 3572434 - 3572457 + g 100 -12.5 -5.78622 | opp_overlap 3572434 3572418 CTCGGGGGCTATCAA GCCAGTCAG TTCACT CTGACTGGC TTTTTTTTCCCCTAG TERM 3753 3572457 - 3572434 - G 82 -12.5 -3.14132 | opp_overlap 3572434, overlap 3572418 CTCGGGGGCTATCAA GCCAGTCAG TTCACT CTGACTGGC TTTTTTTTCCCCTAG TERM 3754 3574518 - 3574530 + G 71 -10.5 -2.76468 | overlap 3574515 CCAATGATGTCCGTC GCCCC GCA GGGGC TGCTATTGGCTACTA YPK_3269 3572783 - 3574546 + | gamma-glutamyltransferase TERM 3755 3574685 - 3574714 + T 95 -12.3 -3.35813 | opp_overlap 3574685 3574684 3574687 AGTATCTGAAAATAT TATCCCCTATCGA ACTA TTGATGGGGGATA TTCATTAGAGTGGAG YPK_3270 3575434 - 3574754 - | short-chain dehydrogenase/reductase SDR YPK_3271 3577419 - 3575590 - | alpha amylase catalytic region TERM 3756 3577075 - 3577059 - G 77 -2.9 -5.26918 | overlap 3577060 AGATCTGATAAAAAA CTTGGTC CGC GACCCAA TCAGGCCCGCTATCG TERM 3757 3577923 - 3577897 - R 100 -6.5 -5.85244 | opp_overlap 3577897 AATTAAAAGAAAAAA GCCGGGACAGA TGAAC TGTACCCCGGC TTTGTATCGATTATC YPK_3272 3579356 - 3577965 - | amino acid permease-associated region TERM 3758 3578557 - 3578540 - G 78 -11.3 -3.36492 | opp_overlap 3578533, overlap 3578544 GCTGGAAGGTCAGAA CGAACGG ACTA CCGTTCG TGCCCACTTGATTCC TERM 3759 3579407 - 3579387 - R 100 -11.1 -4.72272 | overlap 3579365 TTTTTTCAGCAAAAA GCCACGGAT ATT AACCGTGGC TAAAAATACTCTATT YPK_3273 3580751 - 3579432 - | branched-chain amino acid transport system II carrier protein YPK_3274 3582289 - 3581225 - | phosphate binding protein TERM 3760 3581467 - 3581485 + g 79 -11 -3.54307 | CAAAATCTTGCCCAC TCGCTGCC AAC GGCAGTGA TTTAACACCACTGTT YPK_3275 3583627 - 3582311 - | PAS/PAC sensor signal transduction histidine kinase TERM 3761 3582391 - 3582381 - G 76 -2.4 -5.29885 | AAGGTAAAAATAAAA CGGG TAC CCAG ACCAATTTCACTCAT TERM 3762 3583299 - 3583282 - G 76 -11.3 -3.25304 | overlap 3583272 3583294 3583295 AAATATTACCATCAA CCGTGGT GATA ACCACGG CATCAGGCAGTGACT YPK_3276 3584341 - 3583652 - | two component transcriptional regulator YPK_3277 3584609 - 3585853 + | nuclease SbcCD, D subunit TERM 3763 3587076 - 3587047 - g 80 -6.5 -4.81083 | overlap 3587040 3587066 CTGAATGAGCAAAAA CTATTGCAGAC CCATCAAC GCCTGCAACAG CTAGCAGACTATGCC YPK_3278 3585850 - 3589539 + | SMC domain-containing protein YPK_3279 3590657 - 3589743 - | ROK family protein TERM 3764 3590724 - 3590706 - H 88 -9.6 -4.25104 | TTCTCGCGATCAAAA TACCCTGC TAG GCAGGATA ACTGTGATCTGGATA TERM 3765 3590975 - 3590951 - H 84 -11.3 -3.14132 | CCCTGCGTTGATTAA CTCGCGCGCTC CAG GCGCGCCCGAG CCAAGGATAACACTA YPK_3280 3590990 - 3591901 + | putative exonuclease RdgC TERM 3766 3592074 - 3592108 + T 74 -10 -3.08133 | opp_overlap 3592067 3592065 3592076 AAAAAGGATAGATGA TATGTCGCCCCCTCTG GCA TAGAGAGGGTGACAGA TTCGCTAACTCAATA TERM 3767 3592106 - 3592076 - T 86 -11.9 -2.91086 | opp_overlap 3592074, overlap 3592067 3592065 AAAGGATAGATGATA TGTCGCCCCCTCT GGCAT AGAGAGGGTGACA GATTCGCTAACTCAA YPK_3281 3592417 - 3592130 - | hypothetical protein YPK_3282 3593438 - 3592914 - | shikimate kinase TERM 3768 3593513 - 3593493 - R 75 -3.2 -5.21709 | opp_overlap 3593510 TTCGACATCAAAAAA CCGACC GTTATTATT GGCCGG TTGAACAGGTTTACT YPK_3283 3594242 - 3593685 - | putative methyltransferase TERM 3769 3593939 - 3593963 + g 71 -6.4 -4.21194 | opp_overlap 3593939, overlap 3593930 ACTGCTCCGCAGAAC GATCTGCGAT CTGTA AACGCGGATC TTTTAGCTGGTGCAA YPK_3284 3595494 - 3594973 - | methyltransferase type 11 TERM 3770 3595456 - 3595470 + g 80 -2.8 -5.39721 | CAGCCCTTGTTGTAT CTCAAT ATT AGTGAG TTTTTTATCTGCTGC YPK_3285 3595994 - 3595740 - | hypothetical protein YPK_3286 3596950 - 3596192 - | YcgR family protein TERM 3771 3597167 - 3597194 + r 100 -13.6 -3.75863 | gap 1, opp_overlap 3597167, overlap 3597191 TGATTTGAAAAAAAA GCGACAT-TGGCA AAT TGCCACATGTCGC TTTACTAGCGATTTT TERM 3772 3597194 - 3597167 - R 100 -13.6 -5.78622 | gap 1, opp_overlap 3597167 3597191 TGATTTGAAAAAAAA GCGACAT-TGGCA AAT TGCCACATGTCGC TTTACTAGCGATTTT TERM 3773 3597191 - 3597205 + r 78 -5.7 -4.7497 | opp_overlap 3597167, overlap 3597167 GCAAATTGCCACATG TCGCT TTACT AGCGA TTTTTAATCAATCAG YPK_3287 3598537 - 3597278 - | gamma-glutamyl phosphate reductase YPK_3288 3599650 - 3598547 - | glutamate 5-kinase TERM 3774 3599771 - 3599741 - R 78 -9.1 -3.83205 | AGGCTTGATACGAAA TCACCCCCTTTAT TGTGC AGAAAGGGGGTAA TGGGGACAGTTTATG YPK_3289 3600228 - 3599827 - | transcriptional regulator Crl YPK_3290 3601535 - 3600288 - | protein of unknown function DUF1100 hydrolase family protein TERM 3775 3601650 - 3601621 - R 100 -9.3 -4.69326 | overlap 3601626 ATACTGAAGAGAAAA TGAAACGTCCGGC AGGC ACCGGACGCTTAA AGAACAGTAAATTAT TERM 3776 3601645 - 3601626 - R 100 -11.4 -4.32571 | overlap 3601621 GAAGAGAAAATGAAA CGTCCGGC AGGC ACCGGACG CTTAAAGAACAGTAA YPK_3291 3602120 - 3601662 - | xanthine phosphoribosyltransferase TERM 3777 3602670 - 3602660 - g 78 -5.4 -4.89729 | overlap 3602661 TACAAAATCTAAAAA TCTC CGA GAGA AGATATCAGCAATAT YPK_3292 3602547 - 3602852 + | putative holin protein TERM 3778 3602953 - 3602943 - f 74 -4.6 -4.83615 | TAGTGCTTATAAAAA CCCA TTC CGGG CGGGAGGGATGCGCA TERM 3779 3603064 - 3603050 - g 81 -5.8 -4.88258 | overlap 3603060 AAAAGGATAATAAAA TGAAAT TAC ATTTCA ATGCACAACTACATC YPK_3293 3603049 - 3604653 + | chitin-binding domain-containing protein TERM 3780 3604666 - 3604690 + T 100 -15.9 -4.8622 | opp_overlap 3604648 TAATCGTCTCTATCA GCGGGTATTAT TCT ATAATACCCGC TTTTTAATTCAGAAA YPK_3294 3605897 - 3605112 - | LysR family transcriptional regulator TERM 3781 3605181 - 3605191 + g 77 -4 -5.13016 | opp_overlap 3605181 3605175, overlap 3605175 ATTATCACATAAATA GTAA GCG TTAC TTTTTACTTTTAATT TERM 3782 3606334 - 3606324 - H 70 -2.6 -4.9725 | opp_overlap 3606324 ATGCCGACACAAAAA TAAA GGA TTTA ATTCTTATTTTTCCG TERM 3783 3606749 - 3606735 - H 76 -2.8 -5.26875 | opp_overlap 3606739, overlap 3606716 3606738 3606739 TTTTCAATCAAAAAA TCAGCC TAT AGCTAA AGATAGCAATAGGTA TERM 3784 3607216 - 3607202 - H 82 -2.1 -5.65927 | gap 1 GATTTAAATAAAAAA TG-GGC TACA GCCTCA AGTAAAAACCTCATT TERM 3785 3609237 - 3609216 - g 70 -2.2 -5.00616 | overlap 3609229 GGTTTGTTCAAAAAA CCCTATCC TAACAT GGACATGG TGTCGATTGGGCCAA YPK_3295 3607899 - 3609359 + | aminoacyl-histidine dipeptidase YPK_3296 3610531 - 3609473 - | DNA-directed DNA polymerase TERM 3786 3610573 - 3610552 - H 71 -6.7 -4.15044 | overlap 3610555 CCCCCGCCCAACAAA CAACTGTAT AAGT ATACAGTTA AAGTAAAAGGATTCA TERM 3787 3611633 - 3611619 - g 74 -4.2 -4.86033 | overlap 3611621 3611623 AAAGTTGTAGAAAAA TACACC TTG GGTGAA GGGCGTTCTAGCGCA YPK_3297 3610887 - 3611834 + | glycerophosphoryl diester phosphodiesterase TERM 3788 3611910 - 3611950 + T 100 -19.1 -3.32844 | opp_overlap 3611911 3611915, overlap 3611911 3611915 GACAATAATTAAACA ACAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTGC TTGTCAGATAAAAAA TERM 3789 3611911 - 3611949 + T 100 -22.6 -2.59564 | opp_overlap 3611911 3611915, overlap 3611910 3611915 ACAATAATTAAACAA CAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTG CTTGTCAGATAAAAA TERM 3790 3611949 - 3611911 - T 100 -22.6 -4.1648 | opp_overlap 3611911 3611910 3611915, overlap 3611915 ACAATAATTAAACAA CAAAGCCCCCGAACAATG ATG CGTCGTTCGGGGGCTTTG CTTGTCAGATAAAAA TERM 3791 3611945 - 3611915 - T 100 -17.6 -4.62669 | opp_overlap 3611911 3611910 3611915, overlap 3611911 TAATTAAACAACAAA GCCCCCGAACAATG ATG CGTCGTTCGGGGGC TTTGCTTGTCAGATA TERM 3792 3611915 - 3611945 + T 100 -17.6 -4.00124 | opp_overlap 3611915 3611911, overlap 3611911 3611910 TAATTAAACAACAAA GCCCCCGAACAATG ATG CGTCGTTCGGGGGC TTTGCTTGTCAGATA YPK_3298 3612306 - 3612079 - | hypothetical protein YPK_3299 3613398 - 3612319 - | ApbE family lipoprotein TERM 3793 3612681 - 3612699 + g 71 -4.4 -4.66535 | overlap 3612683 CCGCGACTGGCTTTT CAATGGCG ATA CGCCAAGG TTTATTTTCCCCATT YPK_3300 3614605 - 3613382 - | NADH:ubiquinone oxidoreductase, subunit F YPK_3301 3615217 - 3614621 - | NADH:ubiquinone oxidoreductase, subunit E TERM 3794 3614858 - 3614842 - G 72 -10.1 -3.05997 | GTGCCATAAACGACA CGCCACC AAA GATGGCG CAGTTCACGGTGATT YPK_3302 3615853 - 3615224 - | NADH:ubiquinone oxidoreductase, subunit D TERM 3795 3615716 - 3615695 - G 77 -8.7 -4.27796 | overlap 3615696 GAAGAAACTCGAAAA CGCAGTCAC CAGC GTGACTGCC AGAGTCATCACTAAT TERM 3796 3615715 - 3615696 - G 82 -12.2 -3.15593 | overlap 3615695 AAGAAACTCGAAAAC GCAGTCAC CAGC GTGACTGC CAGAGTCATCACTAA YPK_3303 3616646 - 3615846 - | NADH:ubiquinone oxidoreductase, subunit C YPK_3304 3617877 - 3616636 - | NADH:ubiquinone oxidoreductase, subunit B YPK_3305 3619242 - 3617881 - | NADH:ubiquinone oxidoreductase, subunit A TERM 3797 3619448 - 3619464 + H 72 -6.5 -4.28049 | opp_overlap 3619443 CATTACACAAGCAGG TCACCAG CTG CGGGTGA TTTTAGCATTTTCCG YPK_3306 3619720 - 3620460 + | hypothetical protein YPK_3307 3621198 - 3620425 - | glutamine amidotransferase class-II TERM 3798 3620471 - 3620492 + g 73 -8.7 -3.91084 | opp_overlap 3620471 AATAAAGCAAATTCA CCTGGTGCA ATTT TGTGCCAGG TTTCATTACCGGTCA TERM 3799 3620739 - 3620728 - G 73 -7.2 -4.30833 | TAAACTAGCAATAAA GCGG AATA CCGC AGGCCAGTTACCGGG YPK_3308 3621982 - 3621401 - | phosphoheptose isomerase YPK_3309 3622221 - 3624668 + | hypothetical protein TERM 3800 3624733 - 3624708 - T 93 -11.9 -3.62723 | opp_overlap 3624708, overlap 3624704 TATCGAAATAATCAA CCAAGCCTCCC ATTA AGGAGGCTTAG TTTTATGTTTAATAA TERM 3801 3624708 - 3624733 + T 100 -9 -4.82128 | opp_overlap 3624704 3624708 TATCGAAATAATCAA CCAAGCCTCC CATTAA GGAGGCTTAG TTTTATGTTTAATAA YPK_3310 3625586 - 3624840 - | hypothetical protein TERM 3802 3625338 - 3625322 - G 75 -10.1 -3.44284 | overlap 3625320 GCCCCATCAACAATA GGCGCAA ACC CTGCGCC CCGAGTAATCGCTGT TERM 3803 3625518 - 3625499 - G 73 -7.9 -4.08216 | TGATGTGCTGTAAAA TGCCGAT CGGGAT ATCGGCA ACCAAGCGATGAAGT YPK_3311 3627441 - 3625588 - | putative accessory processing protein YPK_3312 3633760 - 3627596 - | filamentous haemagglutinin outer membrane protein TERM 3804 3632113 - 3632124 + g 76 -7.2 -4.33274 | overlap 3632112 3632121 ATGTCAGCGTCGCAT CGGC TCCC GCCG TTTTAGTGATATCGG TERM 3805 3633043 - 3633029 - G 70 -10 -3.1247 | ATGGTCCAGATTCAA GGTCAC GCT GTGACC GACTGCCAGCACAGT YPK_3313 3635591 - 3633801 - | polypeptide-transport-associated domain-containing protein TERM 3806 3635812 - 3635776 - R 82 -2.4 -5.66989 | gap 1, overlap 3635793 TAAACACTAAAAAAA CCGTAAACTTA-GAC TAATTGCC GTCACAGGTTTACGG CAAACAGCAATTTGA YPK_3314 3636287 - 3636195 - | hypothetical protein TERM 3807 3636301 - 3636332 + H 95 -12.4 -3.28712 | overlap 3636304 3636305 ATTTATGCTAGCTCG TAGGCTGAGCCTCA GGGA TGAGGCTCAGGTTA TTGTGCCCAGAAAAC TERM 3808 3636304 - 3636329 + H 100 -11.9 -3.78934 | overlap 3636301 3636305 TATGCTAGCTCGTAG GCTGAGCCTCA GGGA TGAGGCTCAGG TTATTGTGCCCAGAA TERM 3809 3636305 - 3636328 + H 100 -15.4 -2.87146 | overlap 3636304 3636301 ATGCTAGCTCGTAGG CTGAGCCTCA GGGA TGAGGCTCAG GTTATTGTGCCCAGA TERM 3810 3636347 - 3636365 + G 100 -16 -3.07307 | opp_overlap 3636347 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC TERM 3811 3636365 - 3636347 - g 100 -16 -4.37092 | opp_overlap 3636347 ATTGTGCCCAGAAAA CCCCCAGC TAG GCTGGGGG TTCAGTAAAGCTTTC YPK_3315 3636318 - 3636488 + | invasin YPK_3316 3636478 - 3636891 + | transposase IS200-family protein TERM 3812 3637014 - 3637038 + T 88 -9.9 -4.1552 | opp_overlap 3637017, overlap 3637016 3637017 ATAGGCGCATATGAA AAACCTCCGGC TAT GCCGGAGGATA TTTATTGACAAAGTG TERM 3813 3637016 - 3637036 + T 100 -12.5 -3.6761 | opp_overlap 3637017, overlap 3637014 3637017 AGGCGCATATGAAAA ACCTCCGGC TAT GCCGGAGGA TATTTATTGACAAAG TERM 3814 3637017 - 3637035 + T 100 -16 -2.80244 | opp_overlap 3637017, overlap 3637016 3637014 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACAAA TERM 3815 3637035 - 3637017 - T 100 -16 -4.8048 | opp_overlap 3637017 3637016 3637014 GGCGCATATGAAAAA CCTCCGGC TAT GCCGGAGG ATATTTATTGACAAA TERM 3816 3637112 - 3637138 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3637101, overlap 3637107 3637113 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3817 3637113 - 3637139 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3637101, overlap 3637107 3637112 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3818 3637202 - 3637217 + T 73 -9 -3.41359 | overlap 3637200 TTGTCAGCAGTCTGA GCCTCA GGGA TGAGGC TATTAATTTTGAGGC TERM 3819 3637304 - 3637294 - T 100 -8.2 -4.90869 | overlap 3637295 ACCATCAAGTAAAAA GGGG GAT CCCC AACGTCATTGGCGTT TERM 3820 3637429 - 3637419 - T 75 -2.4 -5.30155 | opp_overlap 3637427 GCATCAAGTAAAAAA GGGG ATC CCCA ACGTCATTGGTGTTG YPK_3317 3638737 - 3637514 - | 5-methylthioribose kinase TERM 3821 3638249 - 3638263 + g 74 -2.7 -5.15969 | opp_overlap 3638250, overlap 3638250 TTCCGGGTTGGTATA ACGGC TCACC GCCGC TTTTTTCGCTTGCGC YPK_3318 3638933 - 3639973 + | aIF-2BI family translation initiation factor YPK_3319 3640558 - 3640016 - | acireductone dioxygenase ARD YPK_3320 3641373 - 3640684 - | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YPK_3321 3642038 - 3641370 - | methylthioribulose-1-phosphate dehydratase TERM 3822 3641968 - 3641979 + g 71 -7.2 -4.09685 | opp_overlap 3641956 TTACCGCCAGTCGCC GGGC ACCA GCCC TTTTCGCCGATCCAG TERM 3823 3643226 - 3643239 + G 74 -6.7 -4.38712 | overlap 3643213 TGGGCGTTGCTGCAA TACCG TTAT CGGTA TTTTGTGAAGCTCCG YPK_3322 3642178 - 3643338 + | aminotransferase class I and II YPK_3323 3643326 - 3644096 + | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 3824 3644126 - 3644145 + T 81 -12.2 -2.53715 | overlap 3644125 3644128 CGGTACCTTTGGGGG GAGCCTCA GGGA TGAGGCTC ATTAGTCCTGATGAG YPK_3324 3646100 - 3644817 - | amidase TERM 3825 3645604 - 3645622 + g 74 -11 -2.84504 | overlap 3645602 3645600 ATCGCTTGCGCGACA CTGATGCC ATC GGCATCGG TCGTATTTAACCACT YPK_3325 3647425 - 3646100 - | aminotransferase class V YPK_3326 3648203 - 3647457 - | ABC transporter related YPK_3327 3648837 - 3648184 - | polar amino acid ABC transporter, inner membrane subunit YPK_3328 3649502 - 3648834 - | polar amino acid ABC transporter, inner membrane subunit YPK_3329 3650303 - 3649515 - | extracellular solute-binding protein TERM 3826 3650508 - 3650492 - R 73 -5.8 -4.45399 | overlap 3650493 ATACGAAGATTAAAA CGCACC ATTTA GGTGCA TTAAAACGACTACTG YPK_3330 3651464 - 3650631 - | RpiR family transcriptional regulator TERM 3827 3650682 - 3650699 + g 76 -9.1 -3.80877 | overlap 3650680 AATTTGATGTATCCG CTGGCGG CCTT CTGCCAG TATTTTATGCAGTAA YPK_3331 3651774 - 3651977 + | hypothetical protein YPK_3332 3651974 - 3653371 + | amidohydrolase YPK_3333 3653400 - 3653867 + | hypothetical protein TERM 3828 3654014 - 3653998 - f 78 -9.3 -3.59979 | GGTTGTCATTCCAAA GGGGGCC TTT GGCCCTC GCTCGAAAATGCCTC TERM 3829 3654618 - 3654647 + G 95 -15.1 -2.91695 | overlap 3654575 3654590 3654616 CCATTTATTGGGTTG CCAGTGCCTTGAT GTTT ATCATGGCACTGG TCCTTTGGCGCTGCC YPK_3334 3654107 - 3655306 + | major facilitator transporter TERM 3830 3655805 - 3655815 + G 71 -4.6 -4.54727 | TCAGGTAAAAAAACG GCCT TAT GGGC TTTTGGTTTAACCGA YPK_3335 3655466 - 3656239 + | AzlC family protein YPK_3336 3656236 - 3656577 + | hypothetical protein YPK_3337 3656749 - 3657261 + | MarR family transcriptional regulator TERM 3831 3657716 - 3657696 - g 85 -2.6 -5.55769 | gap 1 CCGCAGAATAAAAAA CAGCA-ACG TAAA CGTGTACTG CTGTTGCTGACGGCC YPK_3338 3657645 - 3658817 + | efflux pump membrane protein YPK_3339 3658856 - 3660391 + | EmrB/QacA family drug resistance transporter TERM 3832 3660489 - 3660433 - T 100 -13.8 -3.40775 | opp_overlap 3660434 3660443 3660448 3660487, overlap 3660434 3660448 ATTTTTAGCCAAATA GCGGTCAACAAAAAAGGGGGCTCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCGT TCTAAAACGTCTCTC TERM 3833 3660434 - 3660488 + T 100 -17.3 -3.3095 | opp_overlap 3660433 3660434 3660448, overlap 3660443 3660448 3660487 TTTTTAGCCAAATAG CGGTCAACAAAAAAGGGGGCTCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCG TTCTAAAACGTCTCT TERM 3834 3660488 - 3660434 - T 100 -17.3 -2.64144 | opp_overlap 3660434 3660443 3660448 3660487, overlap 3660433 3660448 TTTTTAGCCAAATAG CGGTCAACAAAAAAGGGGGCTCTGA ACTCA TCAGCGCCCCCTTTTATTTTTACCG TTCTAAAACGTCTCT TERM 3835 3660443 - 3660479 + T 100 -13.8 -4.6902 | opp_overlap 3660434 3660433 3660448, overlap 3660434 3660448 AAATAGCGGTCAACA AAAAAGGGGGCTCTGA ACTCA TCAGCGCCCCCTTTTA TTTTTACCGTTCTAA TERM 3836 3660474 - 3660448 - T 100 -13.7 -5.4505 | opp_overlap 3660448 3660443 3660434, overlap 3660434 3660433 GCGGTCAACAAAAAA GGGGGCTCTGA ACTCA TCAGCGCCCCC TTTTATTTTTACCGT TERM 3837 3660448 - 3660474 + T 100 -13.7 -5.27023 | opp_overlap 3660434 3660433 3660448, overlap 3660443 3660434 GCGGTCAACAAAAAA GGGGGCTCTGA ACTCA TCAGCGCCCCC TTTTATTTTTACCGT YPK_3340 3661690 - 3660524 - | tRNA/rRNA methyltransferase (SpoU) TERM 3838 3661718 - 3661706 - H 77 -10.5 -3.14132 | opp_overlap 3661702 TGTCTTCTCCACCAA CGCGC AGG GCGCG AAGATTACCTGATGT YPK_3341 3661942 - 3662379 + | thioredoxin TERM 3839 3662504 - 3662531 + F 75 -8.6 -3.86897 | gap 1, opp_overlap 3662475 3662474, overlap 3662499 3662505 TTTTCTGTCGGGGCG TGG-GCCATTCTA TAT TAGAATGGCGCTA TTTCTCAGGAGTCCG TERM 3840 3662505 - 3662529 + F 89 -11.5 -3.5241 | opp_overlap 3662475 3662474, overlap 3662499 3662504 TTTCTGTCGGGGCGT GGGCCATTCTA TAT TAGAATGGCGC TATTTCTCAGGAGTC YPK_3342 3662549 - 3663235 + | DTW domain-containing protein YPK_3343 3663330 - 3665972 + | GCN5-related N-acetyltransferase YPK_3344 3666148 - 3667503 + | phospholipase D/transphosphatidylase TERM 3841 3667535 - 3667519 - f 70 -3.6 -4.78848 | opp_overlap 3667519, overlap 3667512 GTCTTAAAGATAAAA CCCGGT GAATT AGCGGG TTTTCATCTCCCACT YPK_3345 3667565 - 3667906 + | putative lipoprotein TERM 3842 3668078 - 3668058 - g 90 -10.4 -4.34402 | opp_overlap 3668058 TCGCGCACAGCAAAA CCCCACGC TTTGG GCATGGGG TTATCAATACAACGT TERM 3843 3668145 - 3668127 - g 100 -3.8 -5.92337 | ACACAGCAAAAAAAA CCCACG TTTTTGG CATGGG GTCATCATTACAACG TERM 3844 3668211 - 3668193 - g 93 -8.1 -5.21709 | opp_overlap 3668193 3668192 GCGCACAGCAAAAAA CCCACGC TTTGG GCATGGG GTTATCAATACAACG TERM 3845 3668278 - 3668258 - g 100 -10.4 -4.8048 | opp_overlap 3668255 CGCGCACAGCAAAAA CCCCACGC TTTTG GCATGGGG TCATCATTACAACGC TERM 3846 3668317 - 3668351 + G 90 -9.2 -4.50627 | opp_overlap 3668324 TGTGTTTCGCGCACA GCAAAAACCCCACGCT TTG GGCATGGGGTCTTGGC TTTATTTGATGCCTG TERM 3847 3668344 - 3668324 - g 100 -10.4 -4.8048 | opp_overlap 3668317 CGCGCACAGCAAAAA CCCCACGC TTTGG GCATGGGG TCTTGGCTTTATTTG YPK_3346 3668009 - 3668551 + | hypothetical protein TERM 3848 3668582 - 3668572 - T 74 -6.8 -4.27316 | opp_overlap 3668572 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 3849 3669694 - 3669705 + T 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 3850 3669741 - 3669767 + T 70 -9.4 -2.75844 | opp_overlap 3669717 3669719, overlap 3669740 3669743 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 3851 3670201 - 3670219 + T 82 -10.3 -3.57798 | overlap 3670194 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 3852 3674061 - 3674044 - T 100 -12.7 -5.80727 | AAAAACAACAAAAAA GGGGCGA TTTC TCGCCCC TTAGAGGATCAGCTA YPK_3349 3676650 - 3674077 - | ATP-dependent chaperone ClpB TERM 3853 3675344 - 3675357 + g 79 -2.3 -5.41143 | AACCGTTTTTTACTG GCGTC ATCT GACTC TTTTTTTAGGGCCTG TERM 3854 3676024 - 3676048 + g 71 -5 -4.53777 | gap 1 AGCGGTTTTACCCAC CCCAG-GCTCA CCAA TCAGCACTGGG TTATTTTTGGTTCGA YPK_3350 3677511 - 3676780 - | hypothetical protein TERM 3855 3677099 - 3677074 - G 71 -10.4 -2.78793 | opp_overlap 3677074, overlap 3677071 AGCCATAAGAGAGGA CGGTGCCGCA TTGAAT TGCGCCACCG TGTGTTCCAGAACAC TERM 3856 3677074 - 3677099 + g 72 -10.4 -3.06696 | opp_overlap 3677074 3677071 AGCCATAAGAGAGGA CGGTGCCGCA TTGAAT TGCGCCACCG TGTGTTCCAGAACAC TERM 3857 3677475 - 3677462 - G 73 -9.5 -3.29144 | CGAGTGGTGCTACAA GCCCG GACG CGGGC AGGCATCGGCCAATC YPK_3351 3678490 - 3677513 - | RluA family pseudouridine synthase TERM 3858 3678525 - 3678535 + H 75 -8.2 -3.8766 | AACGTTGGGTTTTGA CGGC GAT GCCG TTTAATATAATGTGC YPK_3352 3678626 - 3679357 + | putative lipoprotein TERM 3859 3679406 - 3679381 - f 70 -7.5 -3.85133 | opp_overlap 3679385, overlap 3679371 3679379 3679385 CGAAAGATGAAAACA CCAACGGCAGC TCAG GCTGCCGTTTT CAATTTAGGTTTTCA TERM 3860 3679385 - 3679402 + F 100 -12.7 -4.37198 | opp_overlap 3679381 3679379 3679385 AGATGAAAACACCAA CGGCAGC TCAG GCTGCCG TTTTCAATTTAGGTT TERM 3861 3679402 - 3679385 - f 100 -12.7 -3.56568 | opp_overlap 3679385, overlap 3679381 3679379 AGATGAAAACACCAA CGGCAGC TCAG GCTGCCG TTTTCAATTTAGGTT YPK_3353 3679712 - 3680074 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 3862 3680103 - 3680118 + T 100 -11.8 -4.87291 | CTAATTTCGGTGTAA CGCGCC TTCG GGCGCG TTTTTCATTGACATC YPK_3354 3680301 - 3680164 - | hypothetical protein TERM 3863 3680306 - 3680323 + H 100 -12.7 -5.77988 | opp_overlap 3680306 AAGACGAACAAGAAA GCCTCCC AAGC GGGAGGC TTTTTTTATGTATAT TERM 3864 3680323 - 3680306 - H 100 -12.7 -4.51224 | opp_overlap 3680306 AAGACGAACAAGAAA GCCTCCC AAGC GGGAGGC TTTTTTTATGTATAT YPK_3355 3680436 - 3681593 + | chorismate mutase TERM 3865 3681667 - 3681639 - T 100 -13.2 -5.69473 | CACACCATAAAAAAA GTCATCCCGGCA GGCTG TGCTGGGATGAC CTATAAAAATCTATC YPK_3356 3682819 - 3681698 - | chorismate mutase TERM 3866 3681847 - 3681833 - G 74 -10 -3.61517 | ATGGTGCTCTAACAA GGTGAG CGC CTCACC AAAGCGTTTGTAGTA YPK_3357 3683908 - 3682832 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3867 3683815 - 3683828 + g 75 -5.3 -4.8143 | opp_overlap 3683825, overlap 3683808 3683825 ACTGATCATTTTCGC TCAGT GGAA ACTGA TTTTTCAGTTCTTCC YPK_3358 3684135 - 3684851 + | LytTR family two component transcriptional regulator YPK_3359 3685284 - 3686627 + | anaerobic c4-dicarboxylate antiporter YPK_3360 3686950 - 3687717 + | hypothetical protein TERM 3868 3687734 - 3687758 + T 76 -9.3 -3.50045 | opp_overlap 3687737, overlap 3687735 3687737 CCACCATTCGTCTAT ATAGCGTGGTG TGA TACCACGCTAA TTCTCCTCTCTCCCT TERM 3869 3687735 - 3687757 + T 91 -12.8 -2.69545 | opp_overlap 3687737, overlap 3687734 3687737 CACCATTCGTCTATA TAGCGTGGTG TGA TACCACGCTA ATTCTCCTCTCTCCC TERM 3870 3687737 - 3687755 + T 77 -11 -2.88783 | opp_overlap 3687737, overlap 3687735 3687734 CCATTCGTCTATATA GCGTGGTG TGA TACCACGC TAATTCTCCTCTCTC TERM 3871 3687755 - 3687737 - T 75 -10.3 -2.87564 | opp_overlap 3687737 3687735 3687734 CCATTCGTCTATATA GCGTGGT GTGAT ACCACGC TAATTCTCCTCTCTC TERM 3872 3687938 - 3687918 - T 100 -12.6 -5.69473 | opp_overlap 3687917 3687918 TAGAGCATAAAAAAA GGGCTAGC ACATG GCTAGCCC CTTCATAAGTATTAA TERM 3873 3687918 - 3687938 + T 86 -12.6 -2.52987 | opp_overlap 3687918, overlap 3687917 TAGAGCATAAAAAAA GGGCTAGC ACATG GCTAGCCC CTTCATAAGTATTAA YPK_3361 3688327 - 3687980 - | ribosomal protein L19 YPK_3362 3689148 - 3688408 - | tRNA (guanine-N1)-methyltransferase YPK_3363 3689735 - 3689187 - | 16S rRNA processing protein RimM YPK_3364 3690005 - 3689757 - | ribosomal protein S16 TERM 3874 3690062 - 3690029 - R 100 -18.3 -4.67982 | CTTTAGTTAATAAAA CAACTGGACCCCATC GGGG AACGGGGTCCAGTTG CAATATAAAAAGCCC TERM 3875 3690126 - 3690106 - R 70 -2.6 -5.00884 | opp_overlap 3690106 ATTTTGGCGAAAAAA GCAATCTA AAGCG TAGATTCC TGTTCGCACATTTTG YPK_3365 3691594 - 3690233 - | signal recognition particle protein TERM 3876 3690524 - 3690534 + g 71 -6.8 -4.26076 | opp_overlap 3690522 TTCTGGCAACTGACC TGCC CCT GGCA TTTTACTCAACATAC TERM 3877 3691134 - 3691146 + g 74 -9.1 -3.62518 | opp_overlap 3691134 AAATCAATGCCAACA CCCTG AGC CAGGG TTTCCAACTGTTTGA YPK_3366 3691760 - 3692551 + | cytochrome c assembly protein YPK_3367 3692620 - 3693903 + | hypothetical protein TERM 3878 3693958 - 3693941 - T 87 -4.8 -5.46657 | opp_overlap 3693936 3693941 3693943 CAGTTTAATAAAAAA GACGCT TTAATC AGCGCC TTTTATCATTCTCCT YPK_3368 3694507 - 3693992 - | quorum-sensing autoinducer 2 (AI-2), LuxS TERM 3879 3694581 - 3694609 + r 100 -10.4 -4.36554 | AACTTTTACTCATCC TGCGCGTCTT AATATGTGA AAGACGCGCA TTTGTTATCATCATC TERM 3880 3694648 - 3694665 + r 100 -11.3 -5.55001 | TAGAGATGTTAATTT GGCCACA GTGA TGTGGCC TTTTCTTTTTTATTG YPK_3369 3696273 - 3694675 - | glutamate--cysteine ligase YPK_3370 3696745 - 3696317 - | hypothetical protein TERM 3881 3696625 - 3696645 + g 70 -9.7 -3.16564 | opp_overlap 3696622 3696620 ATAACACCAATATCG CTGCGGG CGCACTA CCCGCAG TTAATAGGGTGACCA YPK_3371 3697308 - 3696742 - | beta-phosphoglucomutase family hydrolase TERM 3882 3697548 - 3697533 - R 91 -8.2 -4.67635 | opp_overlap 3697533, overlap 3697525 GCCAAAAGCAGAAAA CCCCGC TATA GCGAGG TTCCTTAATATGGTG TERM 3883 3697605 - 3697620 + r 73 -9 -3.52102 | overlap 3697593 CCTCGCCCTACGGGC CGTTGC TAAA GCAACG TTGTCTCGCTACGCT TERM 3884 3697655 - 3697671 + r 76 -10.9 -2.69468 | overlap 3697648 3697652 TCGAACTTCCGACCA CTCGGTT CGT AACCGAG TACTCTATCCAGCTG TERM 3885 3698603 - 3698569 - R 100 -15 -5.27206 | opp_overlap 3698575, overlap 3698572 TAGAGACAATAAAAA GCAGTAGCGCCTCGTG TTA CACGAGACGCTGCTTC AAAATCAGTAAGTCG TERM 3886 3698600 - 3698572 - R 100 -15.3 -3.43245 | opp_overlap 3698575, overlap 3698569 AGACAATAAAAAGCA GTAGCGCCTCGTG TTA CACGAGACGCTGC TTCAAAATCAGTAAG TERM 3887 3698575 - 3698597 + r 93 -13.4 -2.72463 | opp_overlap 3698572 3698569 CAATAAAAAGCAGTA GCGCCTCGTG TTA CACGAGACGC TGCTTCAAAATCAGT YPK_3372 3698793 - 3698608 - | carbon storage regulator, CsrA TERM 3888 3698994 - 3699020 + r 74 -9.4 -3.35849 | opp_overlap 3698994, overlap 3698992 AGGAAAATTAAAAAA CGCCATACCTAG TAC CGAGATATGGCG TGTTGATTTAATAGA TERM 3889 3699020 - 3698994 - R 100 -11.6 -5.48054 | opp_overlap 3698994 3698992 AGGAAAATTAAAAAA CGCCATACCTAG TAC CGAGATATGGCG TGTTGATTTAATAGA YPK_3373 3701670 - 3699043 - | alanyl-tRNA synthetase TERM 3890 3699740 - 3699753 + g 76 -2.3 -5.27335 | opp_overlap 3699741, overlap 3699741 TACTTCTCGCCGAAC AGTGC CATT GCACC TTTTTCTTTCGCCGC YPK_3374 3702373 - 3701810 - | regulatory protein RecX TERM 3891 3702493 - 3702503 + r 86 -6.8 -4.93968 | opp_overlap 3702482 AACACCAATTACTTT GGGT AAC ACCC TTTTTACTTGTCGCT TERM 3892 3702617 - 3702627 + r 76 -6.8 -4.41494 | opp_overlap 3702606 AACACCAATTACTTT GGGT AAC ACCC TTTTACTTACCGCTA TERM 3893 3702731 - 3702700 - R 100 -18.2 -3.6682 | opp_overlap 3702700 3702704, overlap 3702704 TGTTATTTACTCAAA CAAACAGACCGCCA CAAG TGACGGTCTGTTTG TTTACTCCAACTGGT TERM 3894 3702700 - 3702731 + r 100 -16 -3.73953 | opp_overlap 3702700 3702704, overlap 3702704 TGTTATTTACTCAAA CAAACAGACCGCCA CAAG TGACGGTCTGTTTG TTTACTCCAACTGGT TERM 3895 3702727 - 3702704 - R 100 -13.2 -4.46514 | opp_overlap 3702700 3702704, overlap 3702700 ATTTACTCAAACAAA CAGACCGCCA CAAG TGACGGTCTG TTTGTTTACTCCAAC TERM 3896 3702704 - 3702727 + r 100 -11 -4.49556 | opp_overlap 3702704 3702700, overlap 3702700 ATTTACTCAAACAAA CAGACCGCCA CAAG TGACGGTCTG TTTGTTTACTCCAAC YPK_3375 3703829 - 3702759 - | recA protein TERM 3897 3702873 - 3702891 + g 77 -3.8 -5.10933 | opp_overlap 3702877, overlap 3702878 CAGTTTTTTATCTAA CTCAGC AGCAATG GCTGGG TTTTCTTTTAAATAG YPK_3376 3704432 - 3703944 - | CinA domain-containing protein TERM 3898 3704365 - 3704375 + g 71 -6.8 -4.27465 | TCTGCACAGGTCACC CACG CAC CGTG TTCTTTTAACTTATG TERM 3899 3704647 - 3704631 - H 100 -10.9 -4.41548 | opp_overlap 3704621 TGAGAGGGGAGAAAA CCCCTTT TAA AAAGGGG ATAAAAAATCATGAT TERM 3900 3705204 - 3705223 + G 71 -9.3 -3.59233 | overlap 3705201 GGTGGTGCTTATGTT TCAGCCC GCGCTG GGGCTGA TTACTTTAATGGTTA YPK_3377 3704749 - 3706089 + | major facilitator transporter YPK_3378 3706337 - 3707281 + | DeoR family transcriptional regulator YPK_3379 3707416 - 3707273 - | hypothetical protein TERM 3901 3707323 - 3707308 - G 72 -10.4 -3.0395 | opp_overlap 3707303 ACATATTGGTTAACA GCCCCA GCCA TGGGGC GGACACTTTACTCTT YPK_3380 3708927 - 3707503 - | L-fucose isomerase-like protein TERM 3902 3708975 - 3708964 - R 73 -7.2 -4.07885 | TATTTCGGCTGAAAA CGCG CACG CGCG ATGGCCGTTTGCCAG YPK_3381 3710435 - 3708948 - | carbohydrate kinase FGGY TERM 3903 3710124 - 3710164 + g 79 -10.5 -3.66178 | gap 2, opp_overlap 3710125, overlap 3710125 GAAAGCCTCTGAACG ACGGCACTGCCAGCTTACG ACTGG CGTGAGC-GGC-GTGCCGG TTTCCCGTTCCCAAA TERM 3904 3710125 - 3710163 + g 88 -14 -2.79492 | gap 2, opp_overlap 3710125, overlap 3710124 AAAGCCTCTGAACGA CGGCACTGCCAGCTTACG ACTGG CGTGAGC-GGC-GTGCCG GTTTCCCGTTCCCAA TERM 3905 3710163 - 3710125 - G 75 -11.8 -2.7186 | gap 2, opp_overlap 3710125 3710124 AAAGCCTCTGAACGA CGGCACTGCCAGCTTACG ACTGG CGTGAGC-GGC-GTGCCG GTTTCCCGTTCCCAA YPK_3382 3711382 - 3710438 - | transketolase domain-containing protein YPK_3383 3712205 - 3711375 - | transketolase domain-containing protein TERM 3906 3711644 - 3711656 + g 77 -4.8 -5.00267 | TTGATTTAGTGGTCC CTGC CAGTT GCAG TTTATTTTTGTCGTT TERM 3907 3711842 - 3711868 + g 73 -3.7 -4.89567 | gap 1, opp_overlap 3711829, overlap 3711837 3711842 3711843 AACCGTGCCCTAAAG C-CCCGGTATTG AGTT CAATGCCTGGCG TTTTGTGTTTTACAG YPK_3384 3713596 - 3712451 - | monosaccharide-transporting ATPase YPK_3385 3715116 - 3713593 - | ABC transporter related TERM 3908 3714053 - 3714069 + g 90 -7.9 -5.09173 | opp_overlap 3714053 CAGGCGACCGATGAA GCAGGGA AAA TCCCGGC TTTTTTACGATCTTC YPK_3386 3715733 - 3715116 - | putative lipoprotein TERM 3909 3715769 - 3715748 - R 89 -11.5 -3.53761 | opp_overlap 3715751, overlap 3715737 3715736 3715749 3715751 TAATGCCTCCTGAAA GGAGGGGCG ATGT CGCCCCTCA TTACGGCTAAAGCGG TERM 3910 3715768 - 3715749 - R 100 -15 -2.72043 | opp_overlap 3715751, overlap 3715737 3715736 3715748 3715751 AATGCCTCCTGAAAG GAGGGGCG ATGT CGCCCCTC ATTACGGCTAAAGCG TERM 3911 3715751 - 3715766 + r 83 -11.8 -2.72344 | opp_overlap 3715737 3715736 3715749 3715748 3715751 TGCCTCCTGAAAGGA GGGGCG ATGT CGCCCC TCATTACGGCTAAAG TERM 3912 3715766 - 3715751 - R 86 -11.8 -2.90496 | opp_overlap 3715751, overlap 3715737 3715736 3715749 3715748 TGCCTCCTGAAAGGA GGGGCG ATGT CGCCCC TCATTACGGCTAAAG YPK_3387 3716767 - 3715826 - | periplasmic binding protein/LacI transcriptional regulator TERM 3913 3715911 - 3715923 + g 80 -9.1 -4.15833 | TGTTTCTCTTCCAGA CCGGT TTT ACCGG TTTTCAGATACTGAT TERM 3914 3716069 - 3716080 + g 73 -7.2 -4.2679 | CACCACCACATCATT GCGG CCCG CCGC TTTTAATGCGGCTTC TERM 3915 3718805 - 3718794 - g 74 -4.4 -4.91109 | CTGGCACCACAAAAA GACT GGCC AGTC AACGATCCCGCAGAG YPK_3388 3717303 - 3719516 + | catalase/peroxidase HPI TERM 3916 3719563 - 3719510 - f 84 -5.5 -5.36441 | gap 1, opp_overlap 3719522, overlap 3719513 3719517 3719518 3719522 CTTTGATATAAAAAA TAACTAACTAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTA-TAAGAGA AGAAAATCATAATAT TERM 3917 3719560 - 3719513 - f 100 -11.6 -4.77122 | gap 1, opp_overlap 3719522, overlap 3719510 3719517 3719518 3719522 TGATATAAAAAATAA CTAACTAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTA-TAAG AGAAGAAAATCATAA TERM 3918 3719557 - 3719517 - f 100 -13.5 -3.81144 | opp_overlap 3719522, overlap 3719513 3719510 3719518 3719522 ATAAAAAATAACTAA CTAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTAT AAGAGAAGAAAATCA TERM 3919 3719556 - 3719518 - f 100 -17 -2.86246 | opp_overlap 3719522, overlap 3719517 3719513 3719510 3719522 TAAAAAATAACTAAC TAAATAGAGGGGAGGA TTTATCT TCCCCCCCTCTATTTA TAAGAGAAGAAAATC TERM 3920 3719522 - 3719552 + F 88 -11.2 -3.85698 | opp_overlap 3719518 3719517 3719513 3719510 3719522 AAATAACTAACTAAA TAGAGGGGAGGA TTTATCT TCCCCCCCTCTA TTTATAAGAGAAGAA TERM 3921 3719552 - 3719522 - f 100 -13.4 -4.05045 | opp_overlap 3719522, overlap 3719518 3719517 3719513 3719510 AAATAACTAACTAAA TAGAGGGGAGGA TTTATCT TCCCCCCCTCTA TTTATAAGAGAAGAA YPK_3389 3719593 - 3719976 + | cytochrome b562 TERM 3922 3720095 - 3720055 - f 79 -11.4 -2.56571 | gap 1, overlap 3720080 TATATACCCAAGTGA CTTCAAGATGCAGGTAG GCAGCTAA CC-CCTGCATCTTGAAG GGCGACGGGTATATT YPK_3390 3720123 - 3720653 + | cytochrome B561 TERM 3923 3720687 - 3720706 + T 85 -9.3 -4.09685 | TGTTCCGTTTCTCTT TGTCCCG CGTTTA CGGGACA TTTTAAAGAATACAG YPK_3391 3721603 - 3720893 - | cytoplasmic chaperone TorD family protein TERM 3924 3721510 - 3721498 - G 85 -2.6 -5.55769 | GCTCACAATAAAAAA GCGC ACCTA GCAC TCGCCCCGTTAGTCC TERM 3925 3721724 - 3721698 - R 100 -15.3 -3.85092 | ATGAGGCAGAGCAAA GCTATTCTGGG CGCTC CCCAGAATAGC CAAAGTGTCGCCGCC YPK_3392 3722609 - 3721749 - | DMSO reductase anchor subunit (DmsC) YPK_3393 3723228 - 3722611 - | dimethylsulfoxide reductase, chain B YPK_3394 3725690 - 3723240 - | anaerobic dimethyl sulfoxide reductase subunit A YPK_3395 3726959 - 3726264 - | L-ribulose-5-phosphate 4-epimerase TERM 3926 3727030 - 3727008 - R 100 -8.5 -4.93365 | opp_overlap 3727008 GGCGATAATGAAAAA CATCATTCG GTATT CGAATGACG TTATTTAACTAATCG YPK_3396 3727350 - 3727237 - | hypothetical protein TERM 3927 3727836 - 3727814 - g 100 -4.9 -5.75342 | GTGTTGCAAAAAAAA CAAAAACTG ATCCG CAGTTTTGG CGGCGCTGTCGCACT YPK_3397 3727676 - 3728485 + | DeoR family transcriptional regulator YPK_3398 3728643 - 3729650 + | carbohydrate ABC transporter periplasmic-binding protein TERM 3928 3730196 - 3730217 + G 72 -5.8 -4.3586 | TCAAACAAAAAGCCT GCCAGATC TTGCAT GAACTGGC TTTTAGTCTCGATCC YPK_3399 3729799 - 3731313 + | ABC transporter related YPK_3400 3731306 - 3732295 + | monosaccharide-transporting ATPase YPK_3401 3732308 - 3733348 + | monosaccharide-transporting ATPase TERM 3929 3733374 - 3733388 + F 72 -7.1 -3.94471 | opp_overlap 3733368 3733373 3733374 AGGCAGCAAGAGAAC GCCTC CCGAT GAGGC TATTTATTTTAAGGT TERM 3930 3733551 - 3733537 - g 74 -4.2 -4.87807 | GGAATATACGAAAAA GCCC TACCTGC GGGC ACCAGTTGGGTCGAA YPK_3402 3733504 - 3734385 + | hexulose-6-phosphate isomerase YPK_3403 3734396 - 3735892 + | carbohydrate kinase FGGY TERM 3931 3736047 - 3736024 - f 72 -9.6 -3.09823 | opp_overlap 3736019, overlap 3736039 GTGCGGAAAATGAGA TCCACCCTTT ATAA AGAGGGTGGA ACCGTCGCTTAAGCC TERM 3932 3736657 - 3736641 - g 75 -3.6 -5.03715 | overlap 3736643 ATCATGGGCAAAAAA GGCCAG CGGGT CTGGAC TGGGGGTAACGATGC YPK_3404 3736290 - 3737933 + | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit TERM 3933 3738002 - 3738033 + F 100 -10.2 -4.36595 | opp_overlap 3738002, overlap 3737993 TTAAGCGGCTATCAA GGCCTGAGTTCT TCATTCAC GGAGCTCAGGCC TTTTCCGTTTCAGTG YPK_3405 3738116 - 3738367 + | hypothetical protein YPK_3406 3738364 - 3739149 + | methionine aminopeptidase, type I YPK_3407 3739362 - 3739159 - | acetyltransferase TERM 3934 3739262 - 3739286 + g 78 -7.8 -4.4261 | gap 1, opp_overlap 3739263, overlap 3739263 3739263 CCTGAATGCCATTCA AG-CCGCGCCA TCTC TGGCGCGGACG TTTTACTCTTCGGCC TERM 3935 3739263 - 3739284 + g 75 -11.5 -2.54568 | opp_overlap 3739263, overlap 3739262 3739263 CTGAATGCCATTCAA GCCGCGCCA TCTC TGGCGCGGA CGTTTTACTCTTCGG TERM 3936 3739263 - 3739285 + g 76 -11.3 -3.25084 | gap 1, opp_overlap 3739263, overlap 3739263 3739262 CTGAATGCCATTCAA G-CCGCGCCA TCTC TGGCGCGGAC GTTTTACTCTTCGGC TERM 3937 3739284 - 3739263 - G 78 -11.5 -3.07994 | opp_overlap 3739263 3739263 3739262 CTGAATGCCATTCAA GCCGCGCCA TCTC TGGCGCGGA CGTTTTACTCTTCGG TERM 3938 3739338 - 3739370 + g 86 -13.6 -3.08073 | opp_overlap 3739347 3739348, overlap 3739330 CGTCATCGGGGGTTG TCTGCAGAATGAAG TTATC CTCCATTCTGCAGA TGTATTAGCGCTGCT YPK_3408 3740712 - 3739525 - | ShET2 enterotoxin domain-containing protein TERM 3939 3740921 - 3740943 + r 70 -7.7 -3.62255 | opp_overlap 3740920, overlap 3740918 TGAATTCCAATTCAG CCCGCCTTT GGATA AAAGGCCGG TTAGTTCTTCTTGAA YPK_3409 3743250 - 3741154 - | TonB-dependent receptor YPK_3410 3743422 - 3743673 + | hypothetical protein YPK_3411 3743910 - 3745289 + | cytochrome-c peroxidase YPK_3412 3745360 - 3746124 + | arogenate dehydratase TERM 3940 3746730 - 3746709 - g 85 -3.1 -5.69068 | opp_overlap 3746713, overlap 3746713 TAAAAAGATAAAAAA TAAATTCAT TGAG ATGAAATTA ATGACTTTACAGCTT TERM 3941 3746726 - 3746713 - g 80 -3.9 -5.19003 | opp_overlap 3746713, overlap 3746709 AAGATAAAAAATAAA TTCAT TGAG ATGAA ATTAATGACTTTACA YPK_3413 3746548 - 3746751 + | hypothetical protein YPK_3414 3746962 - 3747225 + | hypothetical protein YPK_3415 3747472 - 3747813 + | ArsR family transcriptional regulator TERM 3942 3747905 - 3747916 + G 70 -2.2 -4.9218 | GAGGCGTTATGTTGT TGGC AGGT GCTA TTTTTATCCTGACTA YPK_3416 3747898 - 3749187 + | arsenical pump membrane protein TERM 3943 3749301 - 3749325 + F 72 -6.3 -4.2558 | overlap 3749287 3749302 GCCTATTAGCATTGC CGCCAGTAGGG TTA CTCTCCTGGCA TTTTGATGAAGGATA TERM 3944 3749302 - 3749324 + F 74 -9.8 -3.15027 | overlap 3749287 3749301 CCTATTAGCATTGCC GCCAGTAGGG TTA CTCTCCTGGC ATTTTGATGAAGGAT TERM 3945 3749550 - 3749536 - f 75 -2.2 -5.33131 | overlap 3749546 TAATAAAAAAACAAA TTTAAC AAA ATTAAA GACCAGTTACTGATT TERM 3946 3750413 - 3750395 - g 72 -6 -4.4773 | TGATATGAACGAAAA CAGCTATA TGG TAGAGCTG GGCTGGTTCACTCCT YPK_3417 3749742 - 3750713 + | DeoR family transcriptional regulator YPK_3418 3751508 - 3750834 - | dihydroxyacetone kinase, L subunit YPK_3419 3752603 - 3751515 - | Glycerone kinase TERM 3947 3752304 - 3752259 - G 73 -5.3 -4.58685 | overlap 3752260 3752261 AAACGCTTCTAAAAA TGCCCCAGCCGCCGGGGAG GAGAAGAT CTCACCAACCGCTACGGCA TCCAGCATATTTTTA TERM 3948 3752484 - 3752443 - G 87 -5.2 -5.52384 | GTTTTAGCAAAAAAA TGTGGATAAGCCGCTAAA TAGCCT TTTATCGCCTCTTCCACA ACCTGATCCGGATCG YPK_3420 3753373 - 3752603 - | short-chain dehydrogenase/reductase SDR YPK_3421 3754552 - 3753437 - | alcohol dehydrogenase YPK_3422 3755035 - 3755490 + | RpiB/LacA/LacB family sugar-phosphate isomerase YPK_3423 3755798 - 3755664 - | hypothetical protein TERM 3949 3755739 - 3755757 + g 71 -6.6 -4.18351 | overlap 3755743 ATCTTTCAGCTCAGA TGCGGGGC AGT GCCCTTCA TTTCTGATTTGCTTT TERM 3950 3755743 - 3755753 + g 71 -8.2 -3.67022 | overlap 3755739 TTCAGCTCAGATGCG GGGC AGT GCCC TTCATTTCTGATTTG TERM 3951 3757331 - 3757313 - g 73 -8.8 -3.91897 | opp_overlap 3757313 CCGCCGAGTTACAAA CCCCCTTG AGA CAAGTGGG CGATTTAGAACGTAT YPK_3424 3756295 - 3758850 + | DNA mismatch repair protein MutS TERM 3952 3759109 - 3759136 + T 72 -7.1 -4.05193 | opp_overlap 3759109 AAGGGCATAAAAAAA CGGTGAACA TTTATCTATC TGTTCACCG TTGTTGTGTTTCATC TERM 3953 3759136 - 3759109 - T 100 -7.1 -5.63504 | opp_overlap 3759109 AAGGGCATAAAAAAA CGGTGAACA TTTATCTATC TGTTCACCG TTGTTGTGTTTCATC YPK_3425 3760237 - 3759239 - | RpoD family RNA polymerase sigma factor YPK_3426 3761275 - 3760292 - | peptidase M23B TERM 3954 3760741 - 3760716 - G 78 -11.9 -3.01712 | opp_overlap 3760703 CTTGGTGCGGTAACA GGTGCTGTTGT AGCG ACAACCGCACC AGATGATGGCAACAT TERM 3955 3761050 - 3761033 - G 73 -5.5 -4.57474 | overlap 3761035 CCAAGCGATATAAAA CAGCGTG TCAC CACGCTT AACGGTATAGGTATT TERM 3956 3761048 - 3761035 - G 70 -8.1 -3.89301 | overlap 3761033 AAGCGATATAAAACA GCGTG TCAC CACGC TTAACGGTATAGGTA YPK_3427 3762023 - 3761397 - | protein-L-isoaspartate O-methyltransferase TERM 3957 3761946 - 3761960 + g 79 -11.4 -3.22298 | CGGTACCGCTTCGAT CGCCTG TAA CAGGCG TTCGTCGTGAATACC YPK_3428 3762781 - 3762017 - | stationary-phase survival protein SurE TERM 3958 3762375 - 3762360 - G 71 -6.8 -4.21631 | AACGCACGTAATAAA CGGCAA GTCA CTGCCG CCGCCGTATCATAAT YPK_3429 3763808 - 3762759 - | tRNA pseudouridine synthase D TruD TERM 3959 3762843 - 3762828 - G 77 -10.4 -3.54129 | TACACTGGTCGCAAA GCTCCC CGCA GGGAGC CAGAAACTCAGCTCA TERM 3960 3763560 - 3763574 + g 91 -11.4 -4.07885 | AAACCACTGTTCGGT GACCGC ATG GCGGTC TTTTAACCCCGCATA YPK_3430 3764307 - 3763819 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YPK_3431 3765171 - 3764446 - | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YPK_3432 3765495 - 3765175 - | septum formation initiator YPK_3433 3766127 - 3765810 - | hypothetical protein YPK_3434 3767022 - 3766318 - | adenylyl-sulfate kinase YPK_3435 3768478 - 3766961 - | sulfate adenylyltransferase, large subunit TERM 3961 3767285 - 3767300 + gr 71 -4.6 -4.56775 | overlap 3767287 ATATTGAATGTTTTC AACCCG CGCT CGGGTC TTTTTACCCGCCACT TERM 3962 3767287 - 3767298 + gr 70 -7.2 -3.90048 | overlap 3767285 ATTGAATGTTTTCAA CCCG CGCT CGGG TCTTTTTACCCGCCA YPK_3436 3769398 - 3768490 - | sulfate adenylyltransferase, small subunit TERM 3963 3769167 - 3769141 - G 70 -8 -3.83844 | GCGATGAACCAACAA CTCACAGCCAAA CTC TTTGACCGTGTG ATCGCGAAATTCATA YPK_3437 3770827 - 3769409 - | uroporphyrin-III C-methyltransferase TERM 3964 3769872 - 3769862 - G 71 -8.2 -3.62096 | CGGTACCACCTGAAA CGGG ATC CCCG CTTGCGCCACAACTT TERM 3965 3771310 - 3771330 + H 93 -9.7 -4.37991 | opp_overlap 3771309 3771305 ATAAATTCAAGGCAT GGACGATCA TTA TGATCGCCC TTTTCCGTGTTTTTC TERM 3966 3771422 - 3771394 - H 100 -15.5 -3.1085 | CTAATTGACTCAATA CTACTTGTAGGTA TGA TACCCACAAGTAG CTCACCAGGGGGTTC YPK_3438 3771440 - 3771640 + | YcfA family protein TERM 3967 3771843 - 3771861 + G 79 -9.6 -3.91984 | opp_overlap 3771843 TTTTCATCTTCAAAA CCGTTGAA GGA TTCGACGG TTATTTCCCCGATAT TERM 3968 3771861 - 3771843 - g 71 -7.4 -4.11216 | opp_overlap 3771843 TTTTCATCTTCAAAA CCGTTGAA GGA TTCGACGG TTATTTCCCCGATAT YPK_3439 3771815 - 3772222 + | hypothetical protein TERM 3969 3772334 - 3772360 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 3772323, overlap 3772329 3772335 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 3970 3772335 - 3772361 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 3772323, overlap 3772329 3772334 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 3971 3772422 - 3772442 + T 100 -14.7 -3.14931 | GTTTGTCAGCAGTCT GGGGGCGCT CTT AGCGCCCTC TTAATGAGCCATAGA YPK_3440 3773200 - 3772466 - | phosphoadenosine phosphosulfate reductase YPK_3441 3774927 - 3773197 - | sulfite reductase (NADPH) hemoprotein, beta-component YPK_3442 3776729 - 3774927 - | sulfite reductase (NADPH) flavoprotein, alpha chain TERM 3972 3775789 - 3775803 + g 74 -6.4 -4.431 | overlap 3775784 3775791 TGACTGAGCAGCGCC TGTGCC AGT GGCATA TTTTGTCCGTCAATA YPK_3443 3777122 - 3777481 + | queuosine biosynthesis protein QueD YPK_3444 3778386 - 3777715 - | radical SAM domain-containing protein TERM 3973 3778334 - 3778317 - G 82 -5.5 -5.13741 | GCAAGCGAACAAAAA TCGCTGG AACG CCAGTGA AATAACCCTCGCCCT TERM 3974 3778471 - 3778450 - R 82 -10.2 -3.72576 | opp_overlap 3778450 CCGGCCTCCACCAAA CTGGCTAC GCTCGG GTAGCCAG TTTAACTGTATCAGA TERM 3975 3778450 - 3778471 + r 86 -10.2 -3.74077 | opp_overlap 3778450 CCGGCCTCCACCAAA CTGGCTAC GCTCGG GTAGCCAG TTTAACTGTATCAGA YPK_3445 3779095 - 3778490 - | superoxide dismutase TERM 3976 3779376 - 3779401 + r 74 -10.5 -2.67166 | opp_overlap 3779382, overlap 3779382 CAAAATCAACGCATA AAAAAACCCGC CGAA GCGGGTTTTTA ATTAATTAGTTAACT TERM 3977 3779395 - 3779382 - R 100 -9.5 -5.66684 | opp_overlap 3779376 3779382 CAACGCATAAAAAAA CCCGC CGAA GCGGG TTTTTAATTAATTAG TERM 3978 3779382 - 3779395 + r 100 -9.5 -4.93547 | opp_overlap 3779382, overlap 3779376 CAACGCATAAAAAAA CCCGC CGAA GCGGG TTTTTAATTAATTAG YPK_3446 3780762 - 3779467 - | phosphopyruvate hydratase TERM 3979 3780828 - 3780805 - R 95 -13.1 -3.02109 | AAAACTCCAGACAGA GGGGGCGAC ATCTCA GCCGCCCCC TACCACCAAATATTT YPK_3447 3782480 - 3780843 - | CTP synthase YPK_3448 3783534 - 3782692 - | MazG family protein YPK_3449 3785989 - 3783755 - | (p)ppGpp synthetase I, SpoT/RelA TERM 3980 3784140 - 3784122 - G 72 -6 -4.36914 | CCTTGCGTGATAAAA CCGATAAT TTG ATCACCGG GGATCGGCTGGCAAC TERM 3981 3784565 - 3784591 + g 73 -5 -4.68994 | ACCGAGGTTAGGATT CAGCCAGTCACG GCT TGGGTTTGGCTG TTTTTGAGTGATAAT YPK_3450 3786124 - 3785999 - | hypothetical protein YPK_3451 3786433 - 3789261 + | multi-sensor hybrid histidine kinase TERM 3982 3789322 - 3789298 - T 100 -9.3 -5.15526 | ATAGAAAACCAAAAA GGGCACAGC GAGATAA ACTGTGCCC TTGAGCTAAATGGAA YPK_3452 3790865 - 3789420 - | protease Do YPK_3453 3792583 - 3791063 - | deoxyguanosinetriphosphate triphosphohydrolase YPK_3454 3792877 - 3793578 + | adenosylhomocysteine nucleosidase YPK_3455 3793578 - 3794420 + | periplasmic binding protein YPK_3456 3794420 - 3795034 + | hypothetical protein TERM 3983 3795073 - 3795096 + T 100 -8.8 -5.03715 | opp_overlap 3795073 TTTGAGCATAAAAAA CCGCTGCCAT TCTC ATGGTCGCGG TTTTTTAGCGATGCT TERM 3984 3795096 - 3795073 - T 89 -6.6 -5.31275 | opp_overlap 3795073 TTTGAGCATAAAAAA CCGCTGCCAT TCTC ATGGTCGCGG TTTTTTAGCGATGCT YPK_3457 3795680 - 3795336 - | iron-sulfur cluster assembly accessory protein YPK_3458 3797252 - 3795816 - | chloride channel core TERM 3985 3796269 - 3796254 - G 73 -7.6 -4.0498 | GATAAAAATGAACAA CAGCAT GCCG ATGCTG AAATTACCGGCTGCC TERM 3986 3796706 - 3796687 - G 76 -11.4 -2.83522 | opp_overlap 3796688, overlap 3796686 AGCGGGGCATTAAAT GCCGCAGA CAGC CCTGCGGC TGCACCGGTTGCTAA TERM 3987 3798640 - 3798673 + G 74 -9 -3.69934 | gap 2, opp_overlap 3798635 3798640 CGCTAAAGAGGAGAA CATCCCACTG--GTGG TTAA CCACGTCGGTGGGATG TTTGGCCTATTCTTT YPK_3459 3797612 - 3798892 + | glutamate-1-semialdehyde-2,1-aminomutase TERM 3988 3799145 - 3799162 + T 80 -9.9 -3.58343 | opp_overlap 3799139 3799138 GTCAATAACCTCTAA TCTCCTC TCCG GAGGAGA TTTCAGACTGCTGAC YPK_3460 3801263 - 3799266 - | transport system permease protein TERM 3989 3799312 - 3799300 - G 79 -3.3 -5.20222 | AGCAAATAAACAAAA TAGGG CGC CCCGA TAAATGTCGCTAATA TERM 3990 3800411 - 3800395 - G 78 -12.3 -2.54812 | overlap 3800394 ACCCAGAGCAGCAAT GCCCCTA CAA TAGGGGC CAGTATCAGACGTTG YPK_3461 3802312 - 3801260 - | periplasmic binding protein TERM 3991 3802347 - 3802325 - R 75 -3.2 -5.12172 | overlap 3802326 3802329 CATTAATAAACAAAA CTTACCGGCG CAC CGCCAGCCGG GTGCGGTAAAATACC TERM 3992 3802343 - 3802329 - R 71 -9.2 -2.91398 | overlap 3802325 3802326 AATAAACAAAACTTA CCGGCG CAC CGCCAG CCGGGTGCGGTAAAA YPK_3462 3803106 - 3802312 - | ABC transporter related TERM 3993 3803405 - 3803372 - R 100 -8.7 -5.95539 | overlap 3803373 3803374 GCGCAAAGAAAAAAA TTGGCGGGCGCAGTC TGTA AACCACGCCCGCCGT CACATTTTATTGACC TERM 3994 3803404 - 3803373 - R 100 -12.2 -4.15696 | overlap 3803372 3803374 CGCAAAGAAAAAAAT TGGCGGGCGCAGTC TGTA AACCACGCCCGCCG TCACATTTTATTGAC TERM 3995 3803403 - 3803374 - R 100 -15.7 -3.07791 | overlap 3803373 3803372 GCAAAGAAAAAAATT GGCGGGCGCAGTC TGTA AACCACGCCCGCC GTCACATTTTATTGA YPK_3463 3805908 - 3803428 - | penicillin-binding protein 1B TERM 3996 3804917 - 3804901 - G 70 -7.9 -3.80094 | GCCAAAGTAATACAA GCTACCC AGC GGGAAGC CACGGATTTGGTCAC YPK_3464 3808506 - 3806017 - | ATP-dependent helicase HrpB YPK_3465 3808651 - 3808496 - | hypothetical protein YPK_3466 3808661 - 3809236 + | 2'-5' RNA ligase TERM 3997 3809671 - 3809660 - g 91 -4.4 -5.53288 | opp_overlap 3809660 GGCAATTGAAAAAAA TCAG ATTG CTGA ATTATCTGGTTACAA YPK_3467 3809226 - 3810107 + | sugar fermentation stimulation protein YPK_3468 3810277 - 3810732 + | TraR/DksA family transcriptional regulator TERM 3998 3810802 - 3810760 - f 81 -10.7 -3.3676 | gap 1, opp_overlap 3810767, overlap 3810744 3810769 TGTAACACGGCATAA TGTGTAACACGGTGCCAGAG CCCT CTCCGGCACCGTGTTTGA-A CTGTTGGACCCCTTC TERM 3999 3810767 - 3810796 + F 100 -17.9 -3.66803 | opp_overlap 3810744 3810760 3810769 CGGCATAATGTGTAA CACGGTGCCAGAG CCCT CTCCGGCACCGTG TTTGAACTGTTGGAC TERM 4000 3810794 - 3810769 - f 100 -16.9 -3.07233 | opp_overlap 3810767, overlap 3810760 GCATAATGTGTAACA CGGTGCCAGAG CCCT CTCCGGCACCG TGTTTGAACTGTTGG YPK_3469 3810823 - 3812007 + | glutamate--tRNA ligase TERM 4001 3812139 - 3812118 - g 78 -5.7 -4.66537 | TCCGCGAAGACAAAA CGGTCCGTG ATGA CAAGGCCCG TAAAGATAAAGTGCC TERM 4002 3813007 - 3812969 - g 71 -6.7 -4.22948 | opp_overlap 3812971 AAAACCTATTTAAAA CTGTGCGAATACCAGCT TTTCC AGCCGCTATTCCCACTG ATTGCCCGTAATTTT YPK_3470 3812096 - 3813571 + | poly(A) polymerase YPK_3471 3813579 - 3814058 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YPK_3472 3814327 - 3815124 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 4003 3815360 - 3815374 + G 74 -2.8 -5.1356 | opp_overlap 3815349, overlap 3815362 AAACCCGCGCTGACG TGGTCG TGG TGACTA TTTTTGTTAATCCGC YPK_3473 3815212 - 3816066 + | pantoate--beta-alanine ligase TERM 4004 3816191 - 3816173 - f 78 -10.3 -3.29511 | GGCATTCCCCCATAA CGGGTTC GCTCG GAACCCG TGACCGCCGATGAGC YPK_3474 3816477 - 3816857 + | aspartate 1-decarboxylase YPK_3475 3818319 - 3817006 - | polysaccharide deacetylase TERM 4005 3817996 - 3818008 + g 91 -3.4 -5.75599 | CTTATTTAAATCGCC CAAC ATGTC GTTG TTTTTTTGTGCTTTA TERM 4006 3818508 - 3818456 - R 78 -9.3 -3.64103 | gap 2 TACCCACATTGCAAA GCCCTTGGCGTTACAGCAA-G-TCA GCAAA CGAGCGCCGCTGTAGCGCCAAGGAC AAAGGGAATATATTA YPK_3476 3819291 - 3818521 - | ABC-2 type transporter YPK_3477 3820214 - 3819288 - | ABC transporter related TERM 4007 3820983 - 3820969 - g 81 -7.8 -4.57341 | opp_overlap 3820970 AAGCGCGGGCAAAAA GCCATG ATC CACGGC TGGGTATATGGTATT YPK_3478 3820237 - 3821112 + | carbonate dehydratase YPK_3479 3821982 - 3821437 - | hypoxanthine phosphoribosyltransferase TERM 4008 3822188 - 3822165 - R 100 -13.8 -5.24129 | overlap 3822167 CGGTTTTATAAAAAA CACCCCGGTC AACC GACCGGGGAG TGGCTCAGGCGCTGA TERM 4009 3822186 - 3822167 - R 100 -15 -4.25873 | overlap 3822165 GTTTTATAAAAAACA CCCCGGTC AACC GACCGGGG AGTGGCTCAGGCGCT YPK_3480 3823794 - 3822193 - | multicopper oxidase type 3 YPK_3481 3824111 - 3824458 + | hypothetical protein TERM 4010 3824673 - 3824663 - g 75 -3.2 -5.03314 | opp_overlap 3824667 3824668 TGTACCGCGAAAAAA CCGA GCA TCAG GACCTGGTGATTTTT YPK_3482 3824575 - 3825465 + | spermidine synthase YPK_3483 3825543 - 3826337 + | S-adenosylmethionine decarboxylase proenzyme TERM 4011 3826411 - 3826390 - T 89 -10.2 -3.94746 | TGATACGGAATTAAA GGTGATCG TTCAGG CGATCACC TAAAAACGGCTCGTC YPK_3484 3826759 - 3826607 - | hypothetical protein TERM 4012 3827319 - 3827335 + G 85 -7.9 -4.7373 | opp_overlap 3827315 TATATAGCCAAGGGC CAGGGGC GCT GCCACTG TTTTTAATCGCCTGC YPK_3485 3826775 - 3827662 + | hypothetical protein YPK_3486 3828132 - 3827773 - | hypothetical protein TERM 4013 3828397 - 3828377 - R 100 -16.1 -4.45168 | opp_overlap 3828377, overlap 3828359 TTTTTAAAATAGAAA CGGGAGGCC AAT GGCCCCCCG TTTTAGCTGATGCGA TERM 4014 3828377 - 3828397 + r 100 -13.9 -4.21194 | opp_overlap 3828359 3828377 TTTTTAAAATAGAAA CGGGAGGCC AAT GGCCCCCCG TTTTAGCTGATGCGA YPK_3487 3831047 - 3828450 - | aconitate hydratase 2 TERM 4015 3830648 - 3830664 + g 73 -9.5 -3.30124 | CAGCTTTGGCTTTAT CTTCTAC GTC GTAGAAG TTATCGAACATCAGC TERM 4016 3830925 - 3830940 + g 91 -6.8 -5.2189 | overlap 3830927 TAATAGGAATTCTTC TTCGCC CGCA GGCGGA TTTTTTAATGATTCA TERM 4017 3831544 - 3831512 - R 100 -11.3 -4.64766 | opp_overlap 3831519, overlap 3831516 3831518 3831519 CGTATAGGCTAAAAA TAAATATCCTCCGGC ATA GCCGGAGGTTTTTCA TATGCGCCTATAAGG TERM 4018 3831540 - 3831516 - R 100 -9.9 -4.87389 | opp_overlap 3831519, overlap 3831512 3831518 3831519 TAGGCTAAAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4019 3831538 - 3831518 - R 100 -12.5 -4.04587 | opp_overlap 3831519, overlap 3831516 3831512 3831519 GGCTAAAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4020 3831519 - 3831537 + r 100 -16 -4.8048 | opp_overlap 3831518 3831516 3831512 3831519 GCTAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4021 3831537 - 3831519 - R 100 -16 -3.01668 | opp_overlap 3831519, overlap 3831518 3831516 3831512 GCTAAAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPK_3488 3832076 - 3831618 - | transposase IS200-family protein TERM 4022 3832189 - 3832207 + r 100 -16 -4.36914 | opp_overlap 3832189 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4023 3832207 - 3832189 - R 100 -16 -3.07307 | opp_overlap 3832189 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4024 3832227 - 3832246 + r 83 -9.2 -4.02396 | opp_overlap 3832227 CTGGGCACAAAAAAA CGGCCCCT ATGT AGGGACCG TTTCACTTTTATTTA TERM 4025 3832246 - 3832227 - R 100 -11.4 -5.60993 | opp_overlap 3832227 CTGGGCACAAAAAAA CGGCCCCT ATGT AGGGACCG TTTCACTTTTATTTA YPK_3489 3833742 - 3832318 - | dihydrolipoamide dehydrogenase TERM 4026 3832831 - 3832821 - G 75 -5.4 -4.81551 | opp_overlap 3832821 3832825 CACCGATAGCAAAAA TGTG TGG CACA TTGGTGCGCAGTTGC TERM 4027 3834043 - 3834019 - R 100 -17.2 -3.54743 | opp_overlap 3834015, overlap 3834004 3834022 3834034 GAGCAGTAACCACAA CAAGGCCGGC ACGAA GCCGGCCTTG GCGATTACATCACCA TERM 4028 3834040 - 3834022 - R 100 -13.1 -3.90241 | opp_overlap 3834015, overlap 3834019 3834004 3834034 CAGTAACCACAACAA GGCCGGC ACGAA GCCGGCC TTGGCGATTACATCA YPK_3490 3835634 - 3834048 - | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 4029 3835021 - 3835064 + g 75 -10.2 -3.44051 | gap 1, overlap 3835015 3835023 GCGGCAGGTGCGGCG GCTGGCGCTGGCGCGACAGGT GCG GCTTGTTGAGCCGGAGCC-GC TTCTGCTGCTGGCGC TERM 4030 3835337 - 3835367 + g 100 -8.9 -5.25772 | gap 1, overlap 3835336 TCGCCGCAGAGGCTG CCGGAGCCG-CTGC CTGA GCAGGCGCCGCCGG TTTTTCTTCTGCTTT YPK_3491 3838311 - 3835648 - | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type YPK_3492 3839271 - 3838507 - | GntR domain-containing protein TERM 4031 3839232 - 3839209 - G 73 -9.6 -3.36273 | opp_overlap 3839213 CCCTTCCAAGATCAA GTATTCGAGC TGCT GCTCGATTAC ATCTGATAGTTTGGG TERM 4032 3839585 - 3839559 - H 71 -6.8 -4.08689 | overlap 3839555 CATTTAATAATTAAA TTTAAATTCATA TTT TTTGAATTTAAA TTCACACTTAACTAA YPK_3493 3840034 - 3840141 + | hypothetical protein TERM 4033 3840338 - 3840373 + G 71 -8.4 -3.72141 | gap 1, opp_overlap 3840350 CAGCTAGGCGAAATG GTGGTTGAA-GAACCTG TAG CCGGTTCCTTTAGCCAC TTTGCGTATAAATAT TERM 4034 3840612 - 3840632 + G 77 -4.7 -4.88405 | opp_overlap 3840612 3840615, overlap 3840597 3840607 TTGCCATCATTAAAG TGATCGCGA TTA TTGCGATGA TTTTATTTGGCGGTT YPK_3494 3840134 - 3841531 + | amino acid permease-associated region TERM 4035 3841571 - 3841601 + T 100 -16.2 -3.02511 | opp_overlap 3841567 CAGTTAGTTAACCCT ATCTAGGCCAGCAC TTA GTGCTGGCCTAGGC TATTGACAAAGTACC YPK_3495 3842803 - 3841949 - | signaling modulator of AmpD, AmpE TERM 4036 3842636 - 3842614 - G 73 -3.5 -4.94058 | overlap 3842609 3842616 GGAAGCCAAACAAAA TATTTTGCA CTAAT TGCAAAATC CCCCAAACCAGCACC YPK_3496 3843627 - 3843076 - | N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YPK_3497 3843740 - 3844648 + | nicotinate-nucleotide pyrophosphorylase TERM 4037 3844821 - 3844809 - f 79 -3.3 -5.30155 | overlap 3844810 GTATGAATTAAAAAA CGGCA CCC TGCCT CCAGTTTCTTAAACA YPK_3498 3844851 - 3845315 + | putative prepilin peptidase dependent protein D precursor YPK_3499 3845308 - 3846846 + | type II secretion system protein E YPK_3500 3846906 - 3848042 + | type II secretion system protein YPK_3501 3849561 - 3848518 - | guanosine monophosphate reductase YPK_3502 3849647 - 3849847 + | hypothetical protein YPK_3503 3849857 - 3850477 + | dephospho-CoA kinase YPK_3504 3850474 - 3851226 + | hypothetical protein TERM 4038 3851490 - 3851513 + G 74 -3.1 -5.06414 | AAAAGTCGTTATCTG GGGTGAACA AAGCCC TTTTCGCCC TTTTTGTTGCAAGCG YPK_3505 3851434 - 3851640 + | hypothetical protein TERM 4039 3851753 - 3851729 - T 100 -9.9 -4.41348 | opp_overlap 3851732, overlap 3851731 3851732 TGTGTTTTAAATAAA TATCCTCCGGC ATA GCCGGAGGTTT TTCATATGCGCCTAT TERM 4040 3851751 - 3851731 - T 100 -12.5 -3.81557 | opp_overlap 3851732, overlap 3851729 3851732 TGTTTTAAATAAATA TCCTCCGGC ATA GCCGGAGGT TTTTCATATGCGCCT TERM 4041 3851732 - 3851750 + T 100 -16 -4.8048 | opp_overlap 3851731 3851729 3851732 GTTTTAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC TERM 4042 3851750 - 3851732 - T 100 -16 -2.88452 | opp_overlap 3851732, overlap 3851731 3851729 GTTTTAAATAAATAT CCTCCGGC ATA GCCGGAGG TTTTTCATATGCGCC YPK_3506 3852289 - 3851831 - | transposase IS200-family protein YPK_3507 3852467 - 3852279 - | hypothetical protein TERM 4043 3852420 - 3852402 - G 100 -16 -3.07307 | opp_overlap 3852402 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4044 3852402 - 3852420 + g 100 -16 -4.36914 | opp_overlap 3852402 GAAAGCTTTACTGAA CCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAA TERM 4045 3852466 - 3852439 - G 100 -9.3 -5.24129 | gap 1, opp_overlap 3852443 TCTGGGCACAAAAAA TGGAGCAA-ACG ACGGA CGTCTTGCTCCA TTAAAATAAAGTAGG YPK_3508 3852890 - 3852504 - | mutator MutT protein TERM 4046 3852973 - 3852949 - R 89 -7.2 -4.97888 | gap 1, overlap 3852953 AAAAAAACTTAAAAA TAAAGGGCGGT ATTA ACCGCCC-TCA GACTACTGACAAACC TERM 4047 3852970 - 3852953 - R 100 -12.7 -4.92828 | overlap 3852949 AAACTTAAAAATAAA GGGCGGT ATTA ACCGCCC TCAGACTACTGACAA TERM 4048 3853059 - 3853033 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 3853042, overlap 3853034 3853049 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4049 3853060 - 3853034 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 3853042, overlap 3853033 3853049 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4050 3853138 - 3853155 + r 100 -12.7 -4.21343 | opp_overlap 3853133 3853134, overlap 3853133 TTGTCAATAACCTCA GGGCGGT ATTA ACCGCCC TTTATCTATATTACA YPK_3509 3855899 - 3853185 - | preprotein translocase, SecA subunit TERM 4051 3854783 - 3854793 + g 77 -6.8 -4.50661 | opp_overlap 3854783 3854782 GGAAAGTGATAGAAG CCAG TGT CTGG TTTTCATTCTGGATT TERM 4052 3855810 - 3855830 + g 71 -4.7 -4.65895 | overlap 3855813 GATATCAGGTTCCAT GCGGTTGAT GAC ATCAACTAC TTTTTGCATGCGGCG YPK_3510 3856441 - 3855977 - | secretion monitor family proten TERM 4053 3857050 - 3857013 - g 75 -11.4 -2.71731 | opp_overlap 3857003 GTGATCTTGGAACGA CTGGCTGCGTTGGC CGGAGAGGGT GCCAACGCAACCAA GCGTGATAAGTAGCT YPK_3511 3856539 - 3857063 + | hypothetical protein YPK_3512 3858243 - 3857320 - | UDP-3-0-acyl N-acetylglucosamine deacetylase TERM 4054 3858161 - 3858171 + g 82 -5.4 -5.04385 | GGCGCGGGTCGCATT GTCA GCG TGAC TTTTTTACCGGTGTG YPK_3513 3859491 - 3858340 - | cell division protein FtsZ TERM 4055 3859209 - 3859242 + g 70 -8.1 -3.85522 | overlap 3859211 TAAAGACCATATCCG CACCGTCAAGCGCTG CACG CAGAGCTTCACGGTC TTCTTCTGCTGAATT TERM 4056 3859211 - 3859240 + g 79 -10.7 -3.50808 | overlap 3859209 AAGACCATATCCGCA CCGTCAAGCGCTG CACG CAGAGCTTCACGG TCTTCTTCTGCTGAA YPK_3514 3860820 - 3859564 - | cell division protein FtsA YPK_3515 3861674 - 3860883 - | polypeptide-transport-associated domain-containing protein TERM 4057 3861301 - 3861313 + g 75 -7.7 -4.30014 | GCGAAGGGCACGTAC TCCAC CAG GTGGA TTTTAAGTTCATCCG YPK_3516 3862596 - 3861676 - | D-alanine--D-alanine ligase YPK_3517 3864091 - 3862589 - | UDP-N-acetylmuramate--alanine ligase YPK_3518 3865272 - 3864202 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 4058 3864461 - 3864444 - G 70 -2.5 -4.87786 | overlap 3864445 3864446 GGAATGGCACAAAAA TCGCGGG TAGC CCCGCCG CCGCCACTTCACTGA YPK_3519 3866471 - 3865269 - | cell division protein FtsW YPK_3520 3867787 - 3866471 - | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 4059 3866679 - 3866660 - G 70 -10 -3.09933 | GCGCAACGCAGCCAA TTGACCGC CATC GCGGCCAA AACAGTAGACCTTGA YPK_3521 3868872 - 3867790 - | phospho-N-acetylmuramoyl-pentapeptide-transferase YPK_3522 3870242 - 3868866 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase YPK_3523 3871726 - 3870239 - | UDP-N-acetylmuramyl-tripeptide synthetase YPK_3524 3873476 - 3871713 - | peptidoglycan glycosyltransferase TERM 4060 3873432 - 3873412 - G 71 -6.8 -4.31085 | opp_overlap 3873413, overlap 3873413 CACAGCAACGCAAAA CGCCAGCT AATAA AGCTGGCT TGTTCTTCCTGACGC TERM 4061 3873431 - 3873413 - G 73 -10.3 -3.17928 | opp_overlap 3873413, overlap 3873412 ACAGCAACGCAAAAC GCCAGCT AATAA AGCTGGC TTGTTCTTCCTGACG TERM 4062 3873413 - 3873431 + g 85 -10.3 -3.99374 | opp_overlap 3873413 3873412 ACAGCAACGCAAAAC GCCAGCT AATAA AGCTGGC TTGTTCTTCCTGACG YPK_3525 3873859 - 3873542 - | cell division protein FtsL YPK_3526 3874818 - 3873856 - | S-adenosyl-methyltransferase MraW YPK_3527 3875279 - 3874821 - | MraZ protein TERM 4063 3875076 - 3875056 - G 70 -7.6 -3.92324 | overlap 3875057 TGCCCTAACAGCAAA CGCTGAAC TCGAC GTTCAGCA GGGTTCATGCTCGAC TERM 4064 3875931 - 3875957 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 3875920, overlap 3875926 3875932 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4065 3875932 - 3875958 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 3875920, overlap 3875926 3875931 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4066 3876760 - 3876772 + G 82 -5.5 -5.09173 | CAATGGTTATGGGGG TGGCC TAC GGCTA TTTTTTGGAATATTG YPK_3528 3876381 - 3876821 + | hypothetical protein TERM 4067 3876920 - 3876937 + T 89 -11.3 -3.47322 | opp_overlap 3876920 TGTCAGCAATCAAAA TCAGGGC GGGT GCCCTGA TTCGTTATAGTGAAC TERM 4068 3876937 - 3876920 - T 100 -11.3 -4.45544 | opp_overlap 3876920 TGTCAGCAATCAAAA TCAGGGC GGGT GCCCTGA TTCGTTATAGTGAAC YPK_3529 3877962 - 3876952 - | LacI family transcription regulator TERM 4069 3877945 - 3877929 - G 71 -9.3 -3.53012 | opp_overlap 3877928 CCGTTGTGCGCGAAA CGCCCGC AAG GCGCGCG ATCTCATCCAGTTTC TERM 4070 3878011 - 3877998 - R 74 -6.7 -4.33165 | overlap 3878003 GTAAAGTGATGAAAA GCAGA GCGC TCTGC CGAGAGCCAGCATCC TERM 4071 3878384 - 3878364 - R 100 -13.3 -6.25741 | AAATAAGAAAAAAAA GCTCAACGC TAT GCGCTGAGC CTGATCATTAGAGCG YPK_3530 3878907 - 3878413 - | acetolactate synthase, small subunit YPK_3531 3880637 - 3878910 - | acetolactate synthase, large subunit, biosynthetic type TERM 4072 3880189 - 3880166 - G 78 -11 -3.36492 | gap 1 TTGGCAAGTCGATAA CCACCGGACCG GGA CGG-CCAGTGG ATGCCAGATAAAAGG TERM 4073 3880706 - 3880720 + r 75 -5.6 -4.64159 | opp_overlap 3880708, overlap 3880708 CGATATTCTGTAGGA AAGGCG CAA CGCCTC TTTATTCTTATTTGT TERM 4074 3880718 - 3880708 - R 73 -8.2 -3.73402 | opp_overlap 3880708 3880706 ATATTCTGTAGGAAA GGCG CAA CGCC TCTTTATTCTTATTT TERM 4075 3880708 - 3880718 + r 75 -8.2 -3.90009 | opp_overlap 3880708, overlap 3880706 ATATTCTGTAGGAAA GGCG CAA CGCC TCTTTATTCTTATTT TERM 4076 3881078 - 3881039 - R 100 -13.6 -3.5362 | overlap 3881037 3881041 GAACGGTCAGAAAGA CAGCAGCGACCAGTGTGA GACT TAACACCGGTCACTGCGG GAAGGAATGGTGAAC TERM 4077 3881076 - 3881041 - R 100 -14.8 -3.33798 | overlap 3881039 3881037 ACGGTCAGAAAGACA GCAGCGACCAGTGTGA GACT TAACACCGGTCACTGC GGGAAGGAATGGTGA YPK_3532 3882902 - 3881097 - | AMP-dependent synthetase and ligase YPK_3533 3884433 - 3883477 - | LysR family transcriptional regulator TERM 4078 3883751 - 3883767 + g 79 -2.2 -5.39721 | opp_overlap 3883751 GTTGAGTCGTAATAA GGCTCA CTGAA TGACCC TTTTTTATCTAATGA TERM 4079 3884821 - 3884803 - H 72 -6.2 -4.35885 | opp_overlap 3884802 3884803 3884818, overlap 3884818 AGCCACCACAACAAA TTTATATT AGT AATATAAA AATTTTAATTATAAT YPK_3534 3885110 - 3885325 + | hypothetical protein TERM 4080 3885603 - 3885584 - f 86 -10.6 -3.83155 | opp_overlap 3885585, overlap 3885585 CATCAAGATTAACAA GCCCGCGC AAAT GCGCGGGT TTTTTTTTATCCGCT TERM 4081 3885585 - 3885602 + F 100 -14.1 -6.22802 | opp_overlap 3885584 3885585 ATCAAGATTAACAAG CCCGCGC AAAT GCGCGGG TTTTTTTTTATCCGC TERM 4082 3885602 - 3885585 - f 95 -14.1 -2.8917 | opp_overlap 3885585, overlap 3885584 ATCAAGATTAACAAG CCCGCGC AAAT GCGCGGG TTTTTTTTTATCCGC YPK_3535 3885648 - 3887210 + | 2-isopropylmalate synthase YPK_3536 3887213 - 3888304 + | 3-isopropylmalate dehydrogenase TERM 4083 3888805 - 3888793 - g 74 -9.1 -3.64703 | TGTTGGCGACCCAAA CCCTG AAG CAGGG ACGAGCCAAAACCAT YPK_3537 3888306 - 3889736 + | 3-isopropylmalate dehydratase, large subunit YPK_3538 3889751 - 3890353 + | 3-isopropylmalate dehydratase, small subunit TERM 4084 3890494 - 3890464 - T 86 -12 -3.14581 | gap 1, overlap 3890462 3890460 TAAGTGACTAATAGA TTGTTGGTGCCGG GTCGTA CCGGC-CCAACAA GTAACACGTTTAACT YPK_3539 3891775 - 3890594 - | sugar efflux transporter TERM 4085 3891248 - 3891238 - G 79 -3.2 -5.31855 | CACTAATAACAAAAA TACC GGC GGCA ATGCTAAACATCAGC TERM 4086 3891810 - 3891799 - H 71 -4.4 -4.84359 | CCAGCGCCAGAAAAA GCTA TTAT TAGC ATAATCATAATGGTG TERM 4087 3892260 - 3892239 - H 100 -8.7 -5.93252 | GGGAAAAAGAAAAAA GCCAGCAGA AAAA CCTACTGGC TGGTGAAAAACACCA YPK_3540 3892439 - 3894100 + | extracellular solute-binding protein YPK_3541 3894484 - 3894191 - | hypothetical protein TERM 4088 3895276 - 3895266 - g 73 -4.6 -4.75174 | GATGGAAGGTAAAAA CAGC CAG GCCG ATGTGATTTTAGGGT YPK_3542 3894955 - 3896031 + | thiamine ABC transporter, periplasmic binding protein TERM 4089 3896037 - 3896054 + G 73 -10.5 -3.14931 | CAGCCGTTAATCGCG CCCTGGC TATG GCCGGGG TTGCTGGCCGCTGGG TERM 4090 3897386 - 3897419 + G 79 -10.9 -3.58905 | opp_overlap 3897385 3897384, overlap 3897388 3897392 ACGCGCCCTGAAACG CCCACTGGCTCAGGC GCTG GCCTTTGCCAGTGTG TTATCTATCGGCGAT TERM 4091 3897388 - 3897417 + G 85 -12.1 -3.37198 | opp_overlap 3897385 3897384, overlap 3897386 3897392 GCGCCCTGAAACGCC CACTGGCTCAGGC GCTG GCCTTTGCCAGTG TGTTATCTATCGGCG YPK_3543 3896007 - 3897614 + | thiamine ABC transporter, inner membrane subunit YPK_3544 3897601 - 3898311 + | ABC transporter ATP-binding protein YPK_3545 3899147 - 3898380 - | SNARE associated Golgi protein TERM 4092 3898711 - 3898688 - G 75 -8.1 -4.2074 | CGGGGAAGAGATAAA TCGGCGGCC ATGTCA GGCCACCAA TCACACTGGGTAAGG TERM 4093 3900161 - 3900172 + G 71 -7.2 -4.09805 | GCATTTCTTTGCTTC CGCC GCCG GGCG TTTAATTATTGATGG TERM 4094 3900857 - 3900883 + G 75 -3.7 -5.1101 | gap 2, overlap 3900858 TATGAATGCCTTTTA TGGC-GT-GCTGG GTT CCAGCGGCTGCCG TTTTTTCGATCCTCG YPK_3546 3899343 - 3901712 + | DNA polymerase B region TERM 4095 3902520 - 3902558 + G 81 -9.5 -4.08216 | ACAGGATCGCTTATT CGCCGGTCAGATCGATC GCATG GATCGCTTTGCCCTGCG TTTTCGCGCCCGTAA TERM 4096 3904555 - 3904577 + G 71 -6.3 -4.16016 | gap 1 TTGATCCTGTCTGGC GATACCG-GC AGTT GCGCGGTGTC TTTATTGAAAAATAA YPK_3547 3902173 - 3905079 + | SNF2-related protein YPK_3548 3905187 - 3905041 - | hypothetical protein TERM 4097 3905288 - 3905310 + r 100 -13.5 -5.71712 | TTGTCAGCAGTCTGA TATCCGGGG CATTC CCCCGGATA TTTTTTTGTCTGACG YPK_3549 3905687 - 3905334 - | hypothetical protein YPK_3550 3909203 - 3905709 - | type VI secretion protein IcmF YPK_3551 3910822 - 3909212 - | DotU family type IV/VI secretion system protein YPK_3552 3912174 - 3910819 - | type VI secretion protein TERM 4098 3911385 - 3911397 + g 71 -4.8 -4.65895 | opp_overlap 3911359 ATTGGAACAACTGCT CAGG GTGTA CCTG TTTTTGCATCAACAC YPK_3553 3912785 - 3912294 - | putative lipoprotein YPK_3554 3913143 - 3912778 - | hypothetical protein YPK_3555 3913766 - 3913149 - | hypothetical protein YPK_3556 3914862 - 3913759 - | pentapeptide repeat-containing protein TERM 4099 3914800 - 3914760 - G 83 -6.9 -4.88795 | opp_overlap 3914769 ATTGAATAAAATAAA CCTCAGACAGCGTTAACTG CTG CAACTGACGCTGTGTAAAG TGCCGGCCAATAATC YPK_3557 3917107 - 3914888 - | pentapeptide repeat-containing protein YPK_3558 3919468 - 3917120 - | type VI secretion system Vgr family protein YPK_3559 3922160 - 3919572 - | type VI secretion ATPase YPK_3560 3923161 - 3922178 - | type VI secretion protein YPK_3561 3924998 - 3923154 - | type VI secretion protein YPK_3562 3925474 - 3925031 - | type VI secretion system lysozyme-related protein YPK_3563 3926066 - 3925548 - | hypothetical protein TERM 4100 3926116 - 3926132 + r 76 -10.9 -2.72991 | GTTAAATCAGTATTC GGCAACT CAA AGTTGCC TCATTAAAAATGTAC TERM 4101 3926206 - 3926231 + r 73 -5.5 -4.74598 | gap 1, opp_overlap 3926209 3926213 ATATTCCCCCTCTAA TAAGCG-AGTGA TAT TCACAGCGCTTA TTTCTTTTCGCTTTC YPK_3564 3927740 - 3926229 - | EvpB family type VI secretion protein TERM 4102 3926964 - 3926950 - G 71 -4.3 -4.67038 | opp_overlap 3926950, overlap 3926945 TCTTCAAAAGCAAAA TCATC AATAG GATGA TTTTTGGCACCATAC TERM 4103 3927608 - 3927594 - G 75 -11.4 -2.52015 | overlap 3927593 GGCATACGCAGCAAG CGTGCC TAT GGCACG GCGCACTGTGGCGGA YPK_3565 3928300 - 3927740 - | type VI secretion protein YPK_3566 3929297 - 3928311 - | ImpA domain-containing protein YPK_3567 3929654 - 3930397 + | hypothetical protein TERM 4104 3930553 - 3930527 - f 100 -15.4 -3.16881 | opp_overlap 3930529 CACGTATCTGACGAA TAGTGTCCATTA TCT TAATGGACACTA TTACCCCAAATATAT TERM 4105 3930529 - 3930551 + F 100 -13.6 -3.02263 | opp_overlap 3930527 CGTATCTGACGAATA GTGTCCATTA TCT TAATGGACAC TATTACCCCAAATAT TERM 4106 3932154 - 3932142 - g 70 -7.7 -3.81339 | overlap 3932136 CATCCAGAAGCCAAA GCGAT GGC ATCGC GGCTGCAGCTACATG YPK_3568 3931620 - 3932240 + | pseudouridine synthase YPK_3569 3933390 - 3932557 - | heat shock protein DnaJ domain-containing protein YPK_3570 3933665 - 3935917 + | organic solvent tolerance protein YPK_3571 3935985 - 3937289 + | SurA domain-containing protein TERM 4107 3937348 - 3937378 + G 88 -14.1 -2.62396 | GATTTAGCCATCGCT CTGGCTCAACAGG ATTGG CCTGTTGAGCTGG TAGTCTGCGCGGATC YPK_3572 3937273 - 3938268 + | 4-hydroxythreonine-4-phosphate dehydrogenase YPK_3573 3938261 - 3939079 + | dimethyladenosine transferase YPK_3574 3939093 - 3939470 + | ApaG domain-containing protein YPK_3575 3939487 - 3940356 + | bis(5'nucleosyl)-tetraphosphatase, ApaH TERM 4108 3940394 - 3940423 + T 77 -10.9 -2.78706 | opp_overlap 3940399, overlap 3940399 TTGTAAAGACGCTAA TTAAAGACGCATG AGCT TATGCGTCTTTAG ATTTCACCTATAATT TERM 4109 3940418 - 3940399 - T 74 -7.9 -3.93026 | opp_overlap 3940394 3940399 AAGACGCTAATTAAA GACGCAT GAGCTT ATGCGTC TTTAGATTTCACCTA TERM 4110 3940399 - 3940418 + T 75 -8.6 -3.85165 | opp_overlap 3940399, overlap 3940394 AAGACGCTAATTAAA GACGCATG AGCT TATGCGTC TTTAGATTTCACCTA YPK_3576 3940910 - 3940446 - | hypothetical protein YPK_3577 3941259 - 3941038 - | hypothetical protein TERM 4111 3941689 - 3941724 + r 74 -9.9 -3.13368 | gap 1, opp_overlap 3941693, overlap 3941688 3941693 3941695 TTTATTTTTCTAAAT G-AAACAGGCCCATTA TTACC TAATGGGCCTGTATGC TAATTGTTTTGATGT TERM 4112 3941719 - 3941693 - R 100 -15.3 -4.05788 | opp_overlap 3941689 3941688 3941693 3941695 TTTTTCTAAATGAAA CAGGCCCATTA TTACC TAATGGGCCTG TATGCTAATTGTTTT TERM 4113 3941693 - 3941719 + r 100 -15.3 -2.91094 | opp_overlap 3941693, overlap 3941689 3941688 3941695 TTTTTCTAAATGAAA CAGGCCCATTA TTACC TAATGGGCCTG TATGCTAATTGTTTT TERM 4114 3941695 - 3941717 + r 86 -12.1 -2.9913 | opp_overlap 3941693, overlap 3941693 3941689 3941688 TTTCTAAATGAAACA GGCCCATTA TTACC TAATGGGCC TGTATGCTAATTGTT YPK_3578 3942232 - 3941750 - | dihydrofolate reductase TERM 4115 3942160 - 3942109 - G 78 -11 -3.37796 | TCTTACGACCCATAA TTACCGGTTTATTTAACGTGTTAC GTTT GAACCACGCTAAATCAGCCGGTAA ATGCCATGGCATAGC YPK_3579 3942846 - 3942382 - | hypothetical protein YPK_3580 3943643 - 3942843 - | hypothetical protein YPK_3581 3943905 - 3944573 + | lysine exporter protein LysE/YggA TERM 4116 3944746 - 3944773 + T 79 -8.4 -4.07885 | opp_overlap 3944750, overlap 3944750 TAAGCTGCGAACGTA AAAAGGGCGATG TTGC CATCGCCCTTGA TTTTCGCCACGGATG TERM 4117 3944769 - 3944750 - T 100 -13.6 -4.74103 | opp_overlap 3944746 3944750 CTGCGAACGTAAAAA GGGCGATG TTGC CATCGCCC TTGATTTTCGCCACG TERM 4118 3944750 - 3944769 + T 100 -13.6 -3.66908 | opp_overlap 3944750, overlap 3944746 CTGCGAACGTAAAAA GGGCGATG TTGC CATCGCCC TTGATTTTCGCCACG YPK_3582 3948032 - 3944799 - | carbamoyl-phosphate synthase, large subunit TERM 4119 3947065 - 3947051 - G 75 -11.4 -2.52896 | CCAGTGTGTAACCGA CCGCCA GTT TGGCGG CAATCTTGGCAATCG TERM 4120 3947074 - 3947093 + g 74 -10 -3.53444 | TTGGCGGCAATCTTG GCAATCGG GAAA CCGGTTGC TTTAGAGGCCAGTGC TERM 4121 3947989 - 3948007 + g 73 -2.2 -5.07275 | opp_overlap 3947965 3947982 3947981, overlap 3947993 ATAACAATCGGGCCT GCGCCCAG AAT CAGGATGC TTTTTATATCTGTAC YPK_3583 3949223 - 3948048 - | carbamoyl-phosphate synthase, small subunit TERM 4122 3948483 - 3948504 + g 74 -10.9 -3.05596 | GATCGCGTAATCGCA TGGTTCTGG ATCC CCAGGACCA TTGGATAAGAAGATG TERM 4123 3949640 - 3949622 - R 100 -8.2 -5.80951 | opp_overlap 3949622 3949620 ATTTAAAATAAAAAA GGACAATA AAA TATTGCCC TATTATCAAATGATT TERM 4124 3949683 - 3949666 - R 82 -5.6 -4.93296 | opp_overlap 3949666 TGATTATGATAAAAA CAACCA CATCAC TGGTTG TAATTTAAAGCATTA YPK_3584 3950517 - 3949696 - | dihydrodipicolinate reductase TERM 4125 3950886 - 3950868 - R 77 -10.2 -3.18274 | opp_overlap 3950868 3950869 CGTACTCCAACTGAA TCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 4126 3950868 - 3950886 + r 100 -12.4 -4.37092 | opp_overlap 3950868, overlap 3950869 CGTACTCCAACTGAA TCCCCAGC CTA GCTGGGGG TTTTCTGGGCACAAT TERM 4127 3950869 - 3950885 + r 100 -13.7 -3.21934 | opp_overlap 3950868, overlap 3950868 GTACTCCAACTGAAT CCCCAGC CTA GCTGGGG GTTTTCTGGGCACAA TERM 4128 3950925 - 3950908 - R 100 -8.4 -5.55769 | overlap 3950920 GGGCACAATAAAAAA GCAGCC GCAAAG GGCTGC TTCAGACTGCTGACA TERM 4129 3951015 - 3950989 - R 84 -10.1 -3.82218 | gap 1, opp_overlap 3950998, overlap 3950990 3951005 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4130 3951016 - 3950990 - R 72 -10.1 -2.88849 | gap 1, opp_overlap 3950998, overlap 3950989 3951005 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4131 3951096 - 3951113 + r 75 -8.4 -3.767 | opp_overlap 3951096 GTCAATAACCTCAAA GCAGCC GCAAAG GGCTGC TTTCGTCAGTAAATA TERM 4132 3951113 - 3951096 - R 73 -8.4 -3.72051 | opp_overlap 3951096 GTCAATAACCTCAAA GCAGCC GCAAAG GGCTGC TTTCGTCAGTAAATA YPK_3585 3952126 - 3951173 - | hydroxymethylbutenyl pyrophosphate reductase YPK_3586 3952631 - 3952107 - | peptidylprolyl isomerase FKBP-type YPK_3587 3953142 - 3952633 - | lipoprotein signal peptidase TERM 4133 3953032 - 3953012 - G 80 -4.7 -5.03314 | overlap 3953013 GTTAGGTTGAAAAAA GGAATCAGT GGC ACCGATTCA TACAGAGCAAAGTGG YPK_3588 3955958 - 3953142 - | isoleucyl-tRNA synthetase YPK_3589 3956928 - 3955990 - | riboflavin biosynthesis protein RibF TERM 4134 3956552 - 3956525 - G 85 -10.6 -4.15565 | gap 1 TGCAGTAGTTGAAAA TCC-CCCTGGCGC CCT GCGCCAAAGCGGA AGTCATCACCTACCG TERM 4135 3957505 - 3957490 - g 75 -6.2 -4.62783 | GACGCAGCGCAAAAA GCATTT AATG AAATGC AACCAATCGTGGATC YPK_3590 3957343 - 3957606 + | ribosomal protein S20 TERM 4136 3957628 - 3957657 + T 100 -14.5 -3.08344 | opp_overlap 3957634 3957636, overlap 3957636 GACATTGAGTGCTTG TAAAAAGACCGGC TTAG GCCGGTTTTTTTA TCTCTATCGTTTGGC TERM 4137 3957651 - 3957634 - T 76 -6.9 -4.57073 | opp_overlap 3957628 3957636, overlap 3957636 GAGTGCTTGTAAAAA GACCGGC TTAG GCCGGTT TTTTTATCTCTATCG TERM 4138 3957636 - 3957649 + T 100 -9.5 -5.77988 | opp_overlap 3957634 3957636, overlap 3957628 GTGCTTGTAAAAAGA CCGGC TTAG GCCGG TTTTTTTATCTCTAT TERM 4139 3957649 - 3957636 - T 81 -9.5 -3.90048 | opp_overlap 3957636 3957628, overlap 3957634 GTGCTTGTAAAAAGA CCGGC TTAG GCCGG TTTTTTTATCTCTAT YPK_3591 3958636 - 3957737 - | LysR family transcriptional regulator TERM 4140 3958742 - 3958713 - R 100 -13.7 -3.2048 | TTTAAATTCCACCAA GCATTGCTGCC TGCGCTTG GGCAGCAATGC TGAATCAATAACGTG YPK_3592 3959950 - 3958766 - | Na+/H+ antiporter NhaA TERM 4141 3960153 - 3960112 - R 74 -9.7 -3.12803 | opp_overlap 3960114 3960123, overlap 3960095 3960114 3960123 TATCCATATTCAACA GATAAAAAAAATCCTCGAT ATCA ACCGAGGATTTCTTTCATT TTACTTTATTAGCTG TERM 4142 3960114 - 3960151 + r 75 -5.7 -4.67942 | opp_overlap 3960095 3960112 3960114 3960123, overlap 3960123 TCCATATTCAACAGA TAAAAAAAATCCTCGAT ATCA ACCGAGGATTTCTTTCA TTTTACTTTATTAGC TERM 4143 3960151 - 3960114 - R 93 -12.3 -3.12142 | opp_overlap 3960114 3960123, overlap 3960095 3960112 3960123 TCCATATTCAACAGA TAAAAAAAATCCTCGAT ATCA ACCGAGGATTTCTTTCA TTTTACTTTATTAGC TERM 4144 3960142 - 3960123 - R 100 -8.6 -6.08563 | opp_overlap 3960114 3960123, overlap 3960114 3960112 AACAGATAAAAAAAA TCCTCGAT ATCA ACCGAGGA TTTCTTTCATTTTAC TERM 4145 3960123 - 3960142 + r 77 -6.4 -4.67692 | opp_overlap 3960123 3960114 3960112, overlap 3960114 AACAGATAAAAAAAA TCCTCGAT ATCA ACCGAGGA TTTCTTTCATTTTAC YPK_3593 3961332 - 3960193 - | chaperone protein DnaJ TERM 4146 3960243 - 3960256 + g 80 -3.1 -5.40072 | CATCTAAGAAACTTT TAGCT CGCG GGCTA TTTTTTTCACCAGCA TERM 4147 3961358 - 3961395 + r 100 -15.5 -3.53224 | opp_overlap 3961356, overlap 3961361 CCTACCCTTAACATG CGTGCACGGGCGTAGAG TTTC CTCGACGCCCGTGCTGG TTTCCAGCAACAGTA TERM 4148 3961361 - 3961392 + r 100 -20.2 -2.90496 | opp_overlap 3961356, overlap 3961358 ACCCTTAACATGCGT GCACGGGCGTAGAG TTTC CTCGACGCCCGTGC TGGTTTCCAGCAACA YPK_3594 3963354 - 3961444 - | chaperone protein DnaK TERM 4149 3963016 - 3963026 + g 73 -2.4 -5.12707 | overlap 3962997 3962996 3963023 TTCAGCAGAGATCTG CGGC GGT GCCA TTTTTTGGCCTTTAA TERM 4150 3963755 - 3963767 + G 75 -10.5 -3.39668 | overlap 3963756 AAGTTGGCGAATCCT GGCCC ATT GGGCC TTATGGGCTTTGGGA TERM 4151 3963802 - 3963816 + G 73 -7.1 -4.16842 | opp_overlap 3963802 TACCGTCTTGCTAAA CCTGC ACAAC GCAGG TTTCTTCCCACTGAG TERM 4152 3963922 - 3963908 - g 89 -5.7 -5.31275 | opp_overlap 3963919 TTGGAGTATAAAAAA GGCAA CACAT TTGCC GCCACCGCATTTACC YPK_3595 3963728 - 3964339 + | GPR1/FUN34/yaaH family protein TERM 4153 3964372 - 3964410 + F 100 -20 -4.55798 | opp_overlap 3964372 AGCTTATATTACACA GCACCTTGAATATTAGAT AAA ATTTAATATTCAAGGTGC TTTTACTTTCCACTC TERM 4154 3964410 - 3964372 - f 100 -17.8 -2.97925 | opp_overlap 3964372 AGCTTATATTACACA GCACCTTGAATATTAGAT AAA ATTTAATATTCAAGGTGC TTTTACTTTCCACTC TERM 4155 3964573 - 3964557 - f 85 -2.3 -5.89947 | TAAAGTGAAAAAAAA GAATCAT CAT ATAATCC TCATCGGCTCGATAG TERM 4156 3964931 - 3964904 - g 79 -2.1 -5.48163 | gap 1, opp_overlap 3964904 AAAGAAATTAAAAAA TGATGTCA-ACC TAGAC GGTATGAAATCA TTTGGACTATATAAT YPK_3596 3964629 - 3967085 + | GCN5-related N-acetyltransferase TERM 4157 3967142 - 3967100 - T 78 -5.3 -5.04597 | gap 2, opp_overlap 3967107, overlap 3967102 3967107 AGGTATAGAGAAAAA GATAAAAGCCCATAATTTATT GAT AATAA-TTATGGGCTTTT-TA AAGTGAATTGACTTA TERM 4158 3967141 - 3967102 - T 91 -10.4 -4.14422 | gap 1, opp_overlap 3967107, overlap 3967100 3967107 GTATAGAGAAAAAGA TAAAAGCCCATAATTTATT GAT AATAA-TTATGGGCTTTTT AAAGTGAATTGACTT TERM 4159 3967107 - 3967136 + T 100 -10.3 -4.63184 | gap 1, opp_overlap 3967102 3967100 3967107 GAGAAAAAGATAAAA GCCCATAATTTATT GAT AATAA-TTATGGGC TTTTTAAAGTGAATT TERM 4160 3967136 - 3967107 - T 100 -10.3 -5.02287 | gap 1, opp_overlap 3967107, overlap 3967102 3967100 GAGAAAAAGATAAAA GCCCATAATTTATT GAT AATAA-TTATGGGC TTTTTAAAGTGAATT YPK_3597 3968543 - 3967155 - | major facilitator transporter TERM 4161 3967348 - 3967337 - G 81 -5.8 -4.84363 | opp_overlap 3967336 TTAAACCACCAAAAA TGGC ATAG GCCA CATTGTACGAGAAAG TERM 4162 3967513 - 3967503 - G 74 -6.8 -4.37092 | ATTGGTGTGATAAAA CGAC CAT GTCG ACATCGCCAGCATCA YPK_3598 3969258 - 3968671 - | molybdenum cofactor synthesis domain-containing protein TERM 4163 3969503 - 3969488 - R 100 -10.4 -5.45652 | opp_overlap 3969488 ATCGGCAATAAAAAA GGTGGC TTGC GCCACC TCATTCAGATACCGA TERM 4164 3969488 - 3969503 + r 74 -10.4 -2.73364 | opp_overlap 3969488 ATCGGCAATAAAAAA GGTGGC TTGC GCCACC TCATTCAGATACCGA YPK_3599 3970499 - 3969546 - | transaldolase TERM 4165 3969837 - 3969854 + g 91 -7 -5.32882 | GCTTGCACCCATCAC CACGGT CTTATA ACCGTG TTTTTTGTAGTACTG YPK_3600 3971031 - 3971807 + | hypothetical protein YPK_3601 3972349 - 3972239 - | hypothetical protein TERM 4166 3972676 - 3972648 - R 74 -4.6 -4.74801 | CAATGCCATCAAAAA TGCCCGCA TTTGTGCAAAGTC TGCGGGCA AATCATGGGATAGCA YPK_3602 3973913 - 3972624 - | threonine synthase TERM 4167 3973747 - 3973732 - G 75 -5.4 -4.73613 | gap 1 TCACTACCAATAAAA GCCGACA GAA TG-CGGC TACTACGGGTCACAA YPK_3603 3974846 - 3973917 - | homoserine kinase TERM 4168 3974361 - 3974347 - G 71 -6.4 -4.15508 | overlap 3974348 AACCAATCGCTAAAA CCAGGA ACA TCCTGA CTGATATAACCTTCC TERM 4169 3974566 - 3974545 - G 76 -10.9 -3.13164 | gap 1 CCGGCAACCACTGAA CAGGCGCTGG AAC CCAGC-CCTG AACCGATCGGCATAT YPK_3604 3977308 - 3974849 - | aspartate kinase TERM 4170 3977379 - 3977401 + r 100 -12.7 -5.57729 | opp_overlap 3977379 TGATTGAAAAAAAAA GCCCGCACT GTCTA GGTGCGGGC TTTTTTCTGTTGTTT TERM 4171 3977401 - 3977379 - R 100 -12 -6.11644 | opp_overlap 3977379 TGATTGAAAAAAAAA GCCCGCAC TGTCTAG GTGCGGGC TTTTTTCTGTTGTTT YPK_3605 3977853 - 3977746 - | hypothetical protein YPK_3606 3978411 - 3979127 + | two component transcriptional regulator TERM 4172 3979174 - 3979151 - T 70 -7.4 -3.76607 | opp_overlap 3979153, overlap 3979153 GAATAGAGACGGAAA GAGCCAGCAC ACAG ATGCTGGCTT TTTTGTTTTTATATC TERM 4173 3979153 - 3979172 + T 100 -9.3 -5.98675 | opp_overlap 3979151 3979153 ATAGAGACGGAAAGA GCCAGCA CACAGA TGCTGGC TTTTTTGTTTTTATA TERM 4174 3979172 - 3979153 - T 78 -10 -3.45632 | opp_overlap 3979153, overlap 3979151 ATAGAGACGGAAAGA GCCAGCAC ACAG ATGCTGGC TTTTTTGTTTTTATA YPK_3607 3979768 - 3979301 - | CreA family protein YPK_3608 3979950 - 3979765 - | hypothetical protein YPK_3609 3979994 - 3980860 + | AraC family transcriptional regulator YPK_3610 3981504 - 3980857 - | phosphoglycerate mutase YPK_3611 3981614 - 3982156 + | hypothetical protein YPK_3612 3982545 - 3982153 - | Trp operon repressor YPK_3613 3984701 - 3982782 - | lytic transglycosylase catalytic YPK_3614 3985271 - 3987997 + | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 4175 3988048 - 3988018 - f 100 -9.6 -5.1523 | opp_overlap 3988018 GTCAGAAGAGAAAAA GCCCCGGAGCAG TCCAGCC CAGCTCTGGGGC TTTTGAGGTAAATAA TERM 4176 3988018 - 3988048 + F 100 -11.8 -4.14739 | opp_overlap 3988018 GTCAGAAGAGAAAAA GCCCCGGAGCAG TCCAGCC CAGCTCTGGGGC TTTTGAGGTAAATAA TERM 4177 3988188 - 3988204 + F 84 -2.9 -5.59879 | opp_overlap 3988188 ACTACCTGACAAAAA CCCGG AAAACAG TCGGG TTTTTTATATTTCTA TERM 4178 3988255 - 3988235 - f 72 -6.3 -4.34263 | overlap 3988231 3988229 3988240 3988247 TTTCAATAACATAAA TAAGATTTA AGA TAAATCTCA AATTTACGATGATAT YPK_3615 3988372 - 3988995 + | hypothetical protein TERM 4179 3989359 - 3989327 - g 79 -10 -3.90766 | CATTGATAAACATAA TCGTCAGATAGC TTACTGGGC GCTACCTGACGA TGGGCCTATCCATCA YPK_3616 3988992 - 3990302 + | diguanylate cyclase YPK_3617 3990308 - 3990814 + | OmpA/MotB domain-containing protein TERM 4180 3990828 - 3990849 + F 90 -10.9 -4.05926 | AACGTCCTTTATTTA CCGGTTTGC GGCT GTAAACCGG TTTCTGCCTTTATTC TERM 4181 3991766 - 3991752 - g 88 -2.1 -5.7946 | gap 1 GCTGGAACAAAAAAA TGC-CC GTCT GGCGCA AGAAGCCTCTTCTGA YPK_3618 3990997 - 3992664 + | ABC transporter related TERM 4182 3992812 - 3992783 - T 70 -9.3 -2.88861 | opp_overlap 3992789, overlap 3992788 3992789 TAGTAGCCTGACAGA TAGAAGGGCCTGC AATC GCAGGCCTTTTTA GTCAGGGTATTTCAC TERM 4183 3992807 - 3992788 - T 78 -9.2 -3.64198 | opp_overlap 3992789, overlap 3992783 3992789 GCCTGACAGATAGAA GGGCCTGC AATC GCAGGCCT TTTTAGTCAGGGTAT TERM 4184 3992806 - 3992789 - T 89 -12.7 -2.78197 | opp_overlap 3992789, overlap 3992788 3992783 CCTGACAGATAGAAG GGCCTGC AATC GCAGGCC TTTTTAGTCAGGGTA TERM 4185 3992789 - 3992806 + T 100 -12.7 -4.72986 | opp_overlap 3992789 3992788 3992783 CCTGACAGATAGAAG GGCCTGC AATC GCAGGCC TTTTTAGTCAGGGTA YPK_3619 3993940 - 3992810 - | filamentation induced by cAMP protein Fic TERM 4186 3993962 - 3993990 + r 73 -8.2 -3.72695 | overlap 3993965 3993975 CTCCCAACCGGAGAG TGAGCCGATTAG CCTCA TTATTCGGCTCA TTTGGTGAGCCGAAT TERM 4187 3993965 - 3994021 + r 76 -10.9 -2.67992 | overlap 3993962 3993975 3993996 CCAACCGGAGAGTGA GCCGATTAGCCTCATTATTCGGCTCAT TTG GTGAGCCGAATAGCCAGTATATTCGGC TCATGTGATGATATC TERM 4188 3993975 - 3994011 + r 72 -9.5 -3.09289 | overlap 3993962 3993965 3993996 AGTGAGCCGATTAGC CTCATTATTCGGCTCAT TTG GTGAGCCGAATAGCCAG TATATTCGGCTCATG TERM 4189 3993996 - 3994024 + r 83 -11.9 -2.84634 | overlap 3993975 3993965 ATTCGGCTCATTTGG TGAGCCGAATA GCCAGTA TATTCGGCTCA TGTGATGATATCCAG YPK_3620 3995368 - 3994097 - | XRE family transcriptional regulator TERM 4190 3995310 - 3995326 + g 71 -2.9 -4.93547 | overlap 3995311 CTGGCCTCAGCCACC TGCTGTA AGG TGCAGCC TTTTTGCTTAATTGC TERM 4191 3995417 - 3995404 - R 71 -4.5 -4.74052 | ACTAAACAAAAATAA CACAG TATG CTGCG GGATTGGCACTATTA YPK_3621 3996909 - 3995527 - | DNA repair protein RadA YPK_3622 3997993 - 3997013 - | phosphoserine phosphatase SerB TERM 4192 3998245 - 3998227 - H 73 -8.8 -3.51597 | overlap 3998228 AAGGGTGAATCAGAA CCGCTGCG TCA CGCAGCAA CATCAAGTATGCAGG TERM 4193 3998244 - 3998228 - H 71 -10.1 -2.70476 | overlap 3998227 AGGGTGAATCAGAAC CGCTGCG TCA CGCAGCA ACATCAAGTATGCAG YPK_3623 3998285 - 3998986 + | putative membrane protein Smp TERM 4194 3999060 - 3999025 - T 79 -7.6 -4.31293 | overlap 3999029 TCAGAGAGGAATAAA TCAATTCAGCGGCAGA GATC TCTACCGCTGAAGAAA GAAAAAACCGCTGGA TERM 4195 3999056 - 3999029 - T 100 -15 -3.71527 | overlap 3999025 AGAGGAATAAATCAA TTCAGCGGCAGA GATC TCTACCGCTGAA GAAAGAAAAAACCGC YPK_3624 3999817 - 3999098 - | purine nucleoside phosphorylase YPK_3625 4001165 - 3999942 - | phosphopentomutase YPK_3626 4002619 - 4001297 - | thymidine phosphorylase YPK_3627 4003537 - 4002740 - | deoxyribose-phosphate aldolase TERM 4196 4004018 - 4004044 + r 79 -11 -3.15544 | opp_overlap 4004040 TCTATTGGCCCCGAT TACGCTATTCGT ATC AAGAATAGCGTA TTGGTGAGAATACGC TERM 4197 4004128 - 4004149 + r 74 -10.2 -2.61383 | opp_overlap 4004127 4004128, overlap 4004127 GAATGAAGGGGAAAC GTGCCGTT CTACAA AACGGCAC CTTATACATCACAGT TERM 4198 4004149 - 4004128 - R 77 -10.9 -2.81178 | opp_overlap 4004128 4004127, overlap 4004127 GAATGAAGGGGAAAC GTGCCGTTC TACA AAACGGCAC CTTATACATCACAGT YPK_3628 4005429 - 4004158 - | nucleoside transporter TERM 4199 4005223 - 4005211 - G 74 -4.1 -4.85782 | TCCGCCAAAAATAAA TGAGA TCC CCTCA TTACCATAAGCAATA TERM 4200 4005680 - 4005706 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4005669, overlap 4005675 4005681 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4201 4005681 - 4005707 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4005669, overlap 4005675 4005680 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT YPK_3629 4006773 - 4005964 - | TatD-related deoxyribonuclease YPK_3630 4008063 - 4006789 - | patatin YPK_3631 4008301 - 4008140 - | hypothetical protein TERM 4202 4008350 - 4008329 - R 72 -8 -3.82946 | opp_overlap 4008329 4008328 CCAGTTTAAAGATAA GGTGCCTG ATTAAA CAGACACC CTTTCATTTGGCTCT YPK_3632 4009082 - 4008468 - | transport-associated YPK_3633 4010999 - 4009410 - | peptide chain release factor 3 TERM 4203 4010546 - 4010570 + g 80 -9.3 -4.2461 | CATCCAGAACTTCCA TTGGATCACGA ATT TCGCGGTCCAA TTTGTTCATAAAGGT TERM 4204 4010781 - 4010807 + g 80 -6.6 -4.81851 | opp_overlap 4010772, overlap 4010766 4010765 CGGAAACTGCATTAC CGACGTGGTA ATGGAGA TACCGCGTTG TTTTTCCATTTCCAT TERM 4205 4011196 - 4011172 - R 80 -3.6 -5.25154 | gap 2, opp_overlap 4011192, overlap 4011173 AAAAAAACAATAAAA CGGCGCTATGCC ATT GGCA-A-CGCCA TCATAATGGCATCTT YPK_3634 4011620 - 4011177 - | ribosomal-protein-alanine acetyltransferase TERM 4206 4011505 - 4011529 + gr 78 -4.2 -5.09895 | TTAAAATTGAGGTAC CGGTCGCC CTGATTACT GGCGAACG TTTTTTCCGTCCATG YPK_3635 4012002 - 4011565 - | DNA polymerase III psi subunit TERM 4207 4011689 - 4011672 - GH 75 -8.4 -3.87815 | opp_overlap 4011665 4011672 CCGCATCTTGATAAA GCCCAG CTAATT CTGGGC TATGTAATTGTGCAC TERM 4208 4012221 - 4012207 - g 70 -10 -3.24924 | opp_overlap 4012207 4012206, overlap 4012205 CGGTGATTTACAAGA TGCGCT GCC AGCGCA ATTTGATGCAGCCGG TERM 4209 4013034 - 4013062 + G 76 -9.5 -3.72576 | TAGCGAACTCCTTCC TGCCGTATCCTGC CTT GCTGGATGCCGCA TTTGGTAGCCACGAA YPK_3636 4012115 - 4013158 + | rRNA (guanine-N(2)-)-methyltransferase YPK_3637 4014365 - 4014027 - | hypothetical protein TERM 4210 4014119 - 4014105 - G 82 -5.6 -5.1356 | TGGCAGTAACAAAAA GTGCCG CAA CCGCAC GTGGTACAACATGCT YPK_3638 4014632 - 4015768 + | diguanylate cyclase YPK_3639 4017412 - 4016327 - | pectinesterase YPK_3640 4017805 - 4018068 + | hypothetical protein YPK_3641 4018215 - 4018547 + | hypothetical protein TERM 4211 4018868 - 4018845 - T 100 -11 -5.75342 | GTTCGTCAAAAAAAA CAGCCCCG TGACTGAC CGGGGCTG CTGAAATTACTTTTA YPK_3642 4021994 - 4018908 - | acriflavin resistance protein TERM 4212 4020184 - 4020174 - G 76 -8.2 -3.9712 | GTAGGTCAGCATAAA GCGC ATT GCGC CCTGACCTATGGTTG TERM 4213 4020497 - 4020509 + g 78 -5.5 -4.93365 | CCGGCTTATCCGCAT CAGCT TCA GGCTG TTTTTGGTTCTGGAA YPK_3643 4023076 - 4021994 - | RND family efflux transporter MFP subunit YPK_3644 4023361 - 4023128 - | hypothetical protein TERM 4214 4023961 - 4023941 - R 100 -14 -3.67976 | GCCATTAACGTTAAA CGGCACCC ATAAA GGGTGCCG CGGCTAAACAAAAAA YPK_3645 4024049 - 4023936 - | hypothetical protein TERM 4215 4024062 - 4024088 + r 70 -7.2 -3.74872 | gap 1, opp_overlap 4024050, overlap 4024061 CATCCATGTAGGCTC GAG-CCGCGCC CTCCCT GGCGCGGACGC TTTACTCCCCTGCCT YPK_3646 4025403 - 4024171 - | O-antigen polymerase TERM 4216 4024570 - 4024559 - G 75 -5.8 -4.5442 | GCTTCAACCACAAAA GCAG AACG CTGC CCCATGGAGGAATTA TERM 4217 4025301 - 4025283 - G 71 -4.6 -4.59414 | TGATAATAATCAAAA CCAATGAA ACA CTCATTAG CTGATTATTCGTTGG YPK_3647 4026644 - 4025451 - | lipopolysaccharide heptosyltransferase III TERM 4218 4026211 - 4026199 - G 71 -6.9 -4.15044 | GTGGGTTTTAACAAA CGGCA ATA CGCCG CAGCCCGCCATTGAT TERM 4219 4026267 - 4026303 + g 70 -8 -3.79747 | overlap 4026268 ATGTTGTTTTTTTAG GGCGCTAAACAGTG CTTTTTCGC CACTGATTTGCGCC TTTAATCCTGCATGC TERM 4220 4026268 - 4026281 + g 71 -4.5 -4.58663 | overlap 4026267 TGTTGTTTTTTTAGG GCGCT AAAC AGTGC TTTTTCGCCACTGAT TERM 4221 4026842 - 4026876 + r 100 -10.7 -4.29928 | gap 1, opp_overlap 4026817 ACGCAGCACGTGACG GCGGCGAGCATTGCCC CGAA GCGCAA-GCTGGCCGC TTTTCGCTATTAATT YPK_3648 4028552 - 4026960 - | carbohydrate kinase FGGY YPK_3649 4029718 - 4028723 - | DeoR family transcriptional regulator TERM 4222 4030529 - 4030543 + G 78 -7.8 -4.36411 | opp_overlap 4030517 TTATGCGCGGCCTGA TGCGTG ACT CGCGCA TTTTGATCCTTGATG TERM 4223 4031083 - 4031066 - g 87 -11.3 -4.26076 | opp_overlap 4031068, overlap 4031054 TCACGGCGATGAAAA CCGCCAA TCGC TTGGCGG CGGGCTTAGTGTATT YPK_3650 4030063 - 4031646 + | ABC transporter related YPK_3651 4031640 - 4032695 + | monosaccharide-transporting ATPase YPK_3652 4032692 - 4033693 + | monosaccharide-transporting ATPase YPK_3653 4033752 - 4034771 + | autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein TERM 4224 4034938 - 4034953 + G 73 -5.4 -4.56597 | gap 1, opp_overlap 4034938, overlap 4034940 GATTGGGGAATGCAA TCC-CGC CTG GCGCGGA TTTTTAACCCGAAAA TERM 4225 4035230 - 4035250 + G 81 -12.5 -3.0094 | CTGTACGGCTCAATG CCTGCGCGG TCG CCGCACAGG TGTATATCGGTACGG TERM 4226 4035677 - 4035654 - g 70 -2.4 -4.83615 | gap 1, overlap 4035660 4035661 CATTGTGCATAAAAA TGAGAATGCCG CTG CGGC-TTACCA ACTGTTCCTCCATGA YPK_3654 4034827 - 4035702 + | deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YPK_3655 4035766 - 4036056 + | antibiotic biosynthesis monooxygenase YPK_3656 4036379 - 4036870 + | hypothetical protein YPK_3657 4039526 - 4036932 - | phosphoenolpyruvate-protein phosphotransferase TERM 4227 4037239 - 4037225 - G 77 -4.2 -5.00884 | ATCCGGTGGAAAAAA GGGC TTCTCGC GCCC ACACATCCGCAGCCA TERM 4228 4038233 - 4038219 - G 71 -7.1 -4.0274 | TTCAGTACGAAACAA GCCGA TGGAT TCGGC ACCTTGATTGAAAGC TERM 4229 4039695 - 4039708 + H 78 -5.3 -4.91511 | TAGTCACCGGGAAGT TGAGA TGGC TCTCA TTTTTCTGATGACAT YPK_3658 4039891 - 4040973 + | PTS system, fructose subfamily, IIC subunit YPK_3659 4041111 - 4041431 + | PTS system, fructose-specific, IIB subunnit YPK_3660 4041524 - 4041868 + | phosphotransferase system PTS fructose-specific IIB subunit YPK_3661 4042736 - 4041861 - | AraC family transcriptional regulator TERM 4230 4042689 - 4042708 + g 84 -13.6 -2.55544 | opp_overlap 4042687 4042684, overlap 4042684 ATGGTGAATACTATT CGGCTCTG ATAC CAGAGCCG TCAGTTGACTGATAA YPK_3662 4043274 - 4042738 - | hypothetical protein TERM 4231 4043763 - 4043743 - H 91 -8.5 -4.652 | opp_overlap 4043742 4043747, overlap 4043747 AAATTACCCTAAAAA TAAATTTAG GTG CTAAATTTA ATATATTCCATAAAA TERM 4232 4043759 - 4043747 - H 74 -4.9 -4.87389 | opp_overlap 4043747 4043742, overlap 4043743 TACCCTAAAAATAAA TTTAG GTG CTAAA TTTAATATATTCCAT YPK_3663 4043980 - 4045176 + | hypothetical protein YPK_3664 4045223 - 4046269 + | peptidase M48 Ste24p YPK_3665 4046612 - 4046914 + | type I restriction-modification system, M subunit TERM 4233 4047533 - 4047515 - g 74 -3 -5.01811 | TTACCAAATTAAAAA GCACCGCC CGC GCCGATAC GTTAATTGTTAGCTC YPK_3666 4046986 - 4049631 + | Type I site-specific deoxyribonuclease TERM 4234 4049620 - 4049655 + T 91 -8.4 -4.61482 | overlap 4049622 GTGATGGACATCCCT CCCTCAGCGTAAGT CCTGCCAC ACTTATGCTGAGTG TTCTTTTTTCAGAGG TERM 4235 4049622 - 4049653 + T 83 -9.6 -3.91465 | overlap 4049620 GATGGACATCCCTCC CTCAGCGTAAGT CCTGCCAC ACTTATGCTGAG TGTTCTTTTTTCAGA YPK_3667 4049766 - 4049644 - | hypothetical protein TERM 4236 4049822 - 4049801 - R 74 -6.5 -4.44277 | opp_overlap 4049802, overlap 4049802 GATTAAAACGCAAAA GCCCCTGTC TTTT GACAGAGGT TTGCAGTGATATAAA TERM 4237 4049802 - 4049821 + r 70 -7.8 -3.63068 | opp_overlap 4049801 4049802 ATTAAAACGCAAAAG CCCCTGTC TTTT GACAGAGG TTTGCAGTGATATAA TERM 4238 4049821 - 4049802 - R 76 -10 -3.25481 | opp_overlap 4049802, overlap 4049801 ATTAAAACGCAAAAG CCCCTGTC TTTT GACAGAGG TTTGCAGTGATATAA YPK_3668 4050721 - 4049912 - | integrase family protein YPK_3669 4050995 - 4050816 - | hypothetical protein YPK_3670 4051183 - 4050998 - | hypothetical protein YPK_3671 4051420 - 4052241 + | hypothetical protein TERM 4239 4053390 - 4053379 - g 72 -5.8 -4.45083 | opp_overlap 4053379 4053378 GCCATACTCACAAAA CTGG GACC CCAG CTTTAAAGACAGCGA TERM 4240 4053688 - 4053665 - g 74 -3.8 -4.89009 | opp_overlap 4053679, overlap 4053667 ATACTCAAGCAAAAA CGCCAAAACA CCGA TGTATTGGTG GTCGATGCCTCCAAA YPK_3672 4052306 - 4055038 + | type I restriction-modification system, M subunit TERM 4241 4055297 - 4055281 - g 87 -5.1 -5.4505 | TTGGCCAAGAAAAAA CTCGTGT ATT ACATGAG AAACACCTGCTGTTA TERM 4242 4055656 - 4055644 - g 74 -2.7 -5.02074 | CCATGCTGGAAAAAA TGTTC CCC AAACA AGGCGAAACCATGCC TERM 4243 4056070 - 4056059 - g 77 -4.4 -5.08824 | TGGCCATTTAAAAAA GAAG CTGT CTTC TAAGGCGCAAGGAAA YPK_3673 4055040 - 4056272 + | restriction modification system DNA specificity subunit TERM 4244 4056389 - 4056371 - gT 78 -6 -4.73448 | opp_overlap 4056375 AGAGATACTCAAAAA TAAAACCG AAG CGGATTTA CTGCAAAATTGGGCG TERM 4245 4057040 - 4057059 + GT 75 -10.6 -2.74012 | TGGCTTTTATACCGT CGCCGACG ATAC CGACGGCG TGCTTAAAGTGATGC TERM 4246 4057507 - 4057517 + GT 71 -8.2 -3.55988 | opp_overlap 4057506, overlap 4057511 ACATAGAAAAAATCC GCGC TAA GCGC TTGGTGTTTATTATC TERM 4247 4057697 - 4057725 + GT 71 -6.7 -4.24002 | overlap 4057688 GCTACACCGCTACAG CATTGCTGACG GTATTCG CGACGGCAATG TTTTGGGCTTTGACC YPK_3675 4059643 - 4059413 - | hypothetical protein YPK_3674 4056282 - 4059509 + | HsdR family type I site-specific deoxyribonuclease TERM 4248 4059498 - 4059533 + gT 82 -8.4 -4.40963 | overlap 4059500 GTGATGGACGTCCCT CCCTCAGCGTAAGT CCTGCCAC ACTTATGCTGAGTG TTCTTTTTCAGAGGT TERM 4249 4059500 - 4059531 + gT 81 -9.6 -3.80746 | overlap 4059498 GATGGACGTCCCTCC CTCAGCGTAAGT CCTGCCAC ACTTATGCTGAG TGTTCTTTTTCAGAG TERM 4250 4059699 - 4059678 - TR 100 -12.3 -4.44277 | opp_overlap 4059678 GATTAAAACGCAAAA GCCCCTGTC TTTT GACAGAGGC TTTCAGTGATATAAA TERM 4251 4059678 - 4059699 + Tr 80 -10.1 -3.70149 | opp_overlap 4059678 GATTAAAACGCAAAA GCCCCTGTC TTTT GACAGAGGC TTTCAGTGATATAAA YPK_3676 4061022 - 4059757 - | integrase family protein TERM 4252 4061163 - 4061148 - R 71 -4.6 -4.66163 | ATGTTGACTGAAAAA GCGAGG GAAG CCTTGC GGGGACTGGATTTTA TERM 4253 4061206 - 4061191 - R 100 -9 -5.64274 | opp_overlap 4061189 4061191 TTAGGCATAAAAAAA GACCTC AGTT GAGGTC TATTTACATACTAAT TERM 4254 4061191 - 4061206 + r 73 -9 -3.42663 | opp_overlap 4061191, overlap 4061189 TTAGGCATAAAAAAA GACCTC AGTT GAGGTC TATTTACATACTAAT YPK_3677 4062486 - 4061410 - | permease YjgP/YjgQ family protein TERM 4255 4061599 - 4061576 - G 72 -10.4 -3.07043 | gap 1 GTGACCACCCGAACA CCCATTG-GCA CGC TGCGCAATGGG CCAAAAATAAACGAC TERM 4256 4061868 - 4061885 + g 75 -3.4 -5.0095 | gap 1 AATCAGATTCATCGA CCT-GCG ATAAC CGCCAGG TTTTATTGTCTTTTT YPK_3678 4063580 - 4062486 - | permease YjgP/YjgQ family protein TERM 4257 4065326 - 4065293 - g 76 -9.5 -3.67597 | opp_overlap 4065299, overlap 4065296 GCGTTCAGGTAAGAA CAAGGGCGCGACTGG CCGG CCAGTCGCGTTGTTG TCTCAGTTCCTACTG TERM 4258 4065299 - 4065320 + G 100 -15.9 -3.90761 | opp_overlap 4065296 4065293 AGGTAAGAACAAGGG CGCGACTGG CCGG CCAGTCGCG TTGTTGTCTCAGTTC YPK_3679 4063860 - 4065371 + | leucyl aminopeptidase TERM 4259 4065485 - 4065502 + F 95 -11.3 -3.80625 | TTGTTAGCAGTCTGA GGGCACA CTTT TGTGCCC TTTACGTTGTAGAGA YPK_3680 4065522 - 4065971 + | DNA-directed DNA polymerase TERM 4260 4067658 - 4067644 - g 71 -7.1 -4.08064 | opp_overlap 4067643 AAGTGCCGTTCAAAA CGGTC TACAT GACCG GTCTGATCCGTGATG YPK_3681 4065984 - 4068881 + | valyl-tRNA synthetase TERM 4261 4068908 - 4068946 + F 100 -14.7 -4.66833 | overlap 4068909 ATCAGTCAGTCGTCA CCAGGGGCCATGATAAT TATTC ACTATCATGGCCCCTGC TTTTTACCATTGCAC TERM 4262 4068909 - 4068945 + F 100 -18.2 -3.39618 | overlap 4068908 TCAGTCAGTCGTCAC CAGGGGCCATGATAAT TATTC ACTATCATGGCCCCTG CTTTTTACCATTGCA YPK_3682 4069024 - 4069527 + | GCN5-related N-acetyltransferase YPK_3683 4070466 - 4070035 - | hypothetical protein TERM 4263 4071321 - 4071302 - g 71 -4.9 -4.53303 | CACTGGCACAGAAAA CAGGGGG CAAAAT CACCCTG ACAGAAGATATTGCC YPK_3684 4070677 - 4071684 + | ornithine carbamoyltransferase YPK_3685 4072405 - 4071947 - | hypothetical protein TERM 4264 4072769 - 4072743 - H 84 -10.1 -3.82218 | gap 1, opp_overlap 4072752, overlap 4072744 4072759 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4265 4072770 - 4072744 - H 72 -10.1 -2.88849 | gap 1, opp_overlap 4072752, overlap 4072743 4072759 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4266 4072852 - 4072868 + H 75 -5.2 -4.79352 | CAATAACCTCATCAT TATTCC TTTAC GGAATA TTTTATTATCACTAA YPK_3686 4073044 - 4074612 + | extracellular solute-binding protein TERM 4267 4074725 - 4074756 + G 74 -4.3 -4.94243 | opp_overlap 4074725 4074727 4074730, overlap 4074727 4074730 GTCTGTAGCATTAAA TACCACGCCGGGA ACCCCC TCCCGGCGTCATC TTTTGGTTTTTTTAC TERM 4268 4074754 - 4074727 - g 74 -9.8 -3.48024 | opp_overlap 4074727 4074725 4074730, overlap 4074725 4074730 CTGTAGCATTAAATA CCACGCCGGGAA CCCC CTCCCGGCGTCA TCTTTTGGTTTTTTT TERM 4269 4074730 - 4074751 + G 83 -13 -3.01018 | opp_overlap 4074727 4074725 4074730, overlap 4074727 4074725 TAGCATTAAATACCA CGCCGGGA ACCCCC TCCCGGCG TCATCTTTTGGTTTT TERM 4270 4074751 - 4074730 - g 85 -13.7 -2.88215 | opp_overlap 4074730 4074727 4074725, overlap 4074727 4074725 TAGCATTAAATACCA CGCCGGGAA CCCC CTCCCGGCG TCATCTTTTGGTTTT YPK_3687 4074708 - 4075757 + | binding-protein-dependent transport systems inner membrane component YPK_3688 4075776 - 4076612 + | binding-protein-dependent transport systems inner membrane component TERM 4271 4077030 - 4076997 - g 82 -11.7 -3.28712 | opp_overlap 4076999, overlap 4076999 TCTGTTGCTGCATAA CACCCTTTCAAGCGC TGAT GCGCATGAACGGGTA TTAAATGCACTGGCC TERM 4272 4077028 - 4076999 - g 82 -12.1 -3.21276 | opp_overlap 4076999, overlap 4076997 TGTTGCTGCATAACA CCCTTTCAAGCGC TGAT GCGCATGAACGGG TATTAAATGCACTGG TERM 4273 4076999 - 4077028 + G 81 -12.1 -3.09327 | opp_overlap 4076999 4076997 TGTTGCTGCATAACA CCCTTTCAAGCGC TGAT GCGCATGAACGGG TATTAAATGCACTGG YPK_3689 4076605 - 4077483 + | ABC transporter related YPK_3690 4077470 - 4078186 + | ABC transporter related TERM 4274 4078391 - 4078378 - f 75 -5.3 -4.82901 | CCCTCGCCATAAAAA TCACA ATTC TGTGA CGTACTGAACAGGGA TERM 4275 4078551 - 4078574 + F 78 -10.2 -3.24245 | overlap 4078554 AGCATCCACATCCCC CTCGCAGCCC TGAT GTGCTGCGGG TTGCCTTGTGGATAA TERM 4276 4079592 - 4079582 - g 77 -6.8 -4.56597 | GGGCTTGGGTAAAAA CCGT AAA ACGG CGGTATTCCCAAAAC YPK_3691 4078620 - 4080758 + | anaerobic ribonucleoside-triphosphate reductase TERM 4277 4080870 - 4080841 - f 74 -9.2 -3.33492 | GTAGGTAGGCGACAA CCTCAGGCCTCG TCAATG CGAGGCCTGCTG ATGGGCTGAGTAACC YPK_3692 4081085 - 4081399 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 4278 4081549 - 4081517 - f 71 -8.3 -3.42354 | overlap 4081518 GACGTTAATTGATAA GCCCCTGCGGTTCCT GAT AAGAAACGCGGGGGA GCAAAAATATTCATC TERM 4279 4081548 - 4081518 - f 83 -11.8 -2.65091 | overlap 4081517 ACGTTAATTGATAAG CCCCTGCGGTTCCT GAT AAGAAACGCGGGGG AGCAAAAATATTCAT YPK_3693 4081743 - 4082468 + | GntR family transcriptional regulator TERM 4280 4082626 - 4082644 + G 85 -8 -4.79352 | overlap 4082627 AATTGCAGGCGCGGA TGGGGGCC ACC GGCCGCCG TTTTATTCTCGGTGA TERM 4281 4082627 - 4082643 + G 71 -9.3 -3.46888 | overlap 4082626 ATTGCAGGCGCGGAT GGGGGCC ACC GGCCGCC GTTTTATTCTCGGTG YPK_3694 4082469 - 4082945 + | phosphonate C-P lyase system protein PhnG YPK_3695 4082945 - 4083571 + | phosphonate C-P lyase system protein PhnH YPK_3696 4083571 - 4084749 + | phosphonate metabolism YPK_3697 4084742 - 4085623 + | phosphonate metabolism PhnJ YPK_3698 4085623 - 4086414 + | phosphonate C-P lyase system protein PhnK TERM 4282 4086593 - 4086562 - f 100 -12.4 -3.5393 | AGGACGTCGGCGAAA GGCGTCAACCTACA GGGA TGTAGGTTAAAGCC AGCCCGTAAAGCCGA TERM 4283 4086638 - 4086626 - f 71 -9.1 -3.30605 | opp_overlap 4086624 AGATGAAGAAGGGAA CCCAC GTA GTGGG CGTTGGATGTTGAGC TERM 4284 4086666 - 4086691 + F 81 -11.9 -2.52543 | gap 1, opp_overlap 4086658 4086657 AGCAAAGCCGCAGGT GCAGGAGGGGCG GCC TGCCC-TCCTGC TCGATTGCAGGCACT TERM 4285 4087417 - 4087406 - g 71 -7.2 -4.02051 | opp_overlap 4087406 4087405 4087414 GATGAAGCTAAACAA CGCG GTGC CGCG ATTGTCGGGATTTTC YPK_3699 4086803 - 4087522 + | phosphonate C-P lyase system protein PhnL YPK_3700 4087519 - 4088655 + | phosphonate metabolism protein PhnM YPK_3701 4088655 - 4089236 + | phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN YPK_3702 4089227 - 4089979 + | phosphonate metabolism protein PhnP YPK_3703 4090663 - 4090025 - | hypothetical protein YPK_3704 4091258 - 4090815 - | hypothetical protein YPK_3705 4092553 - 4091387 - | hypothetical protein TERM 4286 4092445 - 4092431 - G 74 -9.2 -3.67597 | CGCTTCACTCAATAA CCGACG TAA CGCCGG TTGCAGAGGTGAAAA YPK_3706 4093662 - 4092568 - | ABC transporter related TERM 4287 4092707 - 4092697 - G 71 -8.2 -3.77209 | overlap 4092698 AAATACAGAGGTAAA GCGG CCC CCGC CCGTGCTGCAAAAGA TERM 4288 4093310 - 4093298 - G 71 -9.1 -3.5393 | opp_overlap 4093296 AGCAGCGCTTGTAAA CCGAG CAA CTCGG CGGTTGATTCGACCT YPK_3707 4094513 - 4093674 - | binding-protein-dependent transport systems inner membrane component YPK_3708 4095416 - 4094532 - | binding-protein-dependent transport systems inner membrane component TERM 4289 4095183 - 4095159 - G 73 -8.5 -3.95653 | AAAGAAGGCGATAAA CGCGGCCACCA CCA TGGTGACCAGG ACATATAACAACGTG YPK_3709 4096737 - 4095424 - | extracellular solute-binding protein YPK_3710 4097298 - 4098521 + | hypothetical protein TERM 4290 4100388 - 4100402 + G 75 -5.6 -4.75174 | overlap 4100390 ACCAACAACCAGCAG CTCAGG TCA CCTGTG TTTTTGACTTGAATG YPK_3711 4098545 - 4100563 + | heparinase II/III family protein TERM 4291 4101043 - 4101027 - g 93 -8 -5.32396 | ACAGCAAAAAGAAAA GCTGGT GATTG ACCAGC CAAGGTTATTGACAA YPK_3712 4100791 - 4101078 + | excinuclease ABC subunit C YPK_3713 4101756 - 4101253 - | GCN5-related N-acetyltransferase YPK_3714 4102352 - 4101750 - | sterol-binding domain-containing protein TERM 4292 4102630 - 4102656 + G 71 -7.3 -4.11295 | gap 1, opp_overlap 4102629 4102628, overlap 4102648 TACCTGCATTAAAGG CCGCAATCGACA ATGG TGCCGAT-GCGG TTTATATCGGTTTGA YPK_3715 4102587 - 4103582 + | peptidase U32 YPK_3716 4103594 - 4104472 + | peptidase U32 TERM 4293 4104488 - 4104532 + T 100 -16 -4.183 | gap 1, opp_overlap 4104495 4104498, overlap 4104495 ACGGCCTTGCCTTAT CAAGTAATAACAGGGAGGTCA TTGC TGGCCTCCCTGTTATT-CATG TTTATTAACGCTTAA TERM 4294 4104495 - 4104526 + T 100 -18.2 -3.54382 | opp_overlap 4104495 4104498, overlap 4104488 TGCCTTATCAAGTAA TAACAGGGAGGTCA TTGC TGGCCTCCCTGTTA TTCATGTTTATTAAC TERM 4295 4104526 - 4104495 - T 100 -16 -3.39895 | opp_overlap 4104495 4104488, overlap 4104498 TGCCTTATCAAGTAA TAACAGGGAGGTCA TTGC TGGCCTCCCTGTTA TTCATGTTTATTAAC TERM 4296 4104523 - 4104498 - T 100 -13.3 -3.83844 | opp_overlap 4104495 4104488, overlap 4104495 CTTATCAAGTAATAA CAGGGAGGTCA TTGC TGGCCTCCCTG TTATTCATGTTTATT YPK_3717 4106019 - 4104613 - | RND efflux system outer membrane lipoprotein TERM 4297 4105571 - 4105589 + g 80 -3 -5.41143 | opp_overlap 4105571 4105574, overlap 4105572 AGATAGGTTTCAAAT TCAGCATG AGA CAAGCTGC TTTTTTTACCAAATA TERM 4298 4105742 - 4105776 + g 88 -13.6 -3.1247 | gap 1 ACCGTTGGTAGCTGG GCGGCCCGTTGCACA CCATAT TGCGCA-CGGGCCGC TTCGATATCGGCAAT YPK_3718 4109146 - 4106021 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 4299 4107480 - 4107467 - G 75 -5.9 -4.56597 | TTCGGTCGGTAAAAA GCCCG TTGG CAGGC GAATAAACAACACAC YPK_3719 4110211 - 4109150 - | RND family efflux transporter MFP subunit TERM 4300 4109843 - 4109853 + g 73 -2.4 -5.00884 | opp_overlap 4109830 GATACGCGCCGTTTC CAGC GCA GCAG TTTTTTCGGCCACAT TERM 4301 4109895 - 4109927 + g 70 -2 -4.9138 | TGCTGATAGCTGGTT TGG-GCGTCATCAGCA TCT TGCTGC-GACACACCA TTTTCTTTGGCTAAT YPK_3720 4110818 - 4111873 + | luciferase family protein YPK_3721 4112128 - 4111838 - | hypothetical protein TERM 4302 4111925 - 4111910 - G 100 -10.4 -5.65177 | opp_overlap 4111910 ACAGCCATAAAAAAA CCAGCC CGGA GGCTGG TTTGAGGTTGTTGAC TERM 4303 4111910 - 4111925 + g 79 -10.4 -3.72051 | opp_overlap 4111910 ACAGCCATAAAAAAA CCAGCC CGGA GGCTGG TTTGAGGTTGTTGAC TERM 4304 4112005 - 4112031 + g 71 -10.1 -2.88849 | gap 1, opp_overlap 4111994, overlap 4112000 4112006 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4305 4112006 - 4112032 + g 82 -10.1 -3.82218 | gap 1, opp_overlap 4111994, overlap 4112000 4112005 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4306 4112096 - 4112111 + g 100 -10.4 -4.82855 | TGTCAGCAGTCTGAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC YPK_3722 4112439 - 4112128 - | XRE family transcriptional regulator YPK_3723 4112831 - 4112463 - | hypothetical protein TERM 4307 4113015 - 4113030 + r 100 -10.4 -4.82855 | opp_overlap 4113015 ATAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC TERM 4308 4113030 - 4113015 - R 100 -10.4 -5.65177 | opp_overlap 4113015 ATAGCCATAAAAAAA CCAGCC CGAA GGCTGG TTTTTACGTTTAATC YPK_3724 4115061 - 4113067 - | DEAD/DEAH box helicase domain-containing protein TERM 4309 4114270 - 4114288 + g 71 -3.8 -4.7497 | ACGCTCAAGGGCTTC TGCTACTT CCA AGGTCGCA TTTTTGGTACGTACG YPK_3725 4116132 - 4115248 - | TPR repeat-containing protein TERM 4310 4115368 - 4115380 + g 74 -9.1 -3.78934 | opp_overlap 4115367 CGTCAGTTTGAACAG CACCG AAG CGGTG TTCTTGTCCCCCAGA TERM 4311 4116245 - 4116214 - R 100 -13.8 -3.48276 | opp_overlap 4116211 CCGCCCCTGAGATAA CACAGCCCCTTACC GATG AGCAAGGAGCTGTG GAATGACTTAATTAC TERM 4312 4116264 - 4116301 + r 100 -11.3 -4.0274 | TGACTTAATTACTCT GCTGCTGCTTCTGGTGC TTCT GCGTCAGGAGTAGTGGC TTCTTTGATGCTCAG YPK_3726 4118374 - 4116257 - | polyribonucleotide nucleotidyltransferase TERM 4313 4118600 - 4118616 + r 100 -13.7 -3.86015 | opp_overlap 4118600 ACTTCTTAGAAAAAA GGGGCCA ACT TGGCCCC TTTCTCCCGAAACTC TERM 4314 4118616 - 4118600 - R 100 -13.7 -5.24531 | opp_overlap 4118600 ACTTCTTAGAAAAAA GGGGCCA ACT TGGCCCC TTTCTCCCGAAACTC YPK_3727 4118907 - 4118638 - | ribosomal protein S15 TERM 4315 4119015 - 4119032 + r 91 -6.9 -5.56263 | opp_overlap 4119018, overlap 4119018 TCGCGGGATCGCAAG GCAGGCC GTGT GGCCTAC TTTTTATTTTCTACT YPK_3728 4120003 - 4119029 - | tRNA pseudouridine synthase B YPK_3729 4120413 - 4120003 - | ribosome-binding factor A TERM 4316 4120427 - 4120458 + r 81 -10.8 -3.36515 | opp_overlap 4120430, overlap 4120425 4120428 ATTTGGATTCTCCAG ACAGTTTGGGGGGC CAAG GCCCCCCAAATGGA TATTTGCAAATCAGA TERM 4317 4120428 - 4120457 + r 95 -14.3 -2.61695 | opp_overlap 4120430, overlap 4120427 4120425 TTTGGATTCTCCAGA CAGTTTGGGGGGC CAAG GCCCCCCAAATGG ATATTTGCAAATCAG TERM 4318 4120455 - 4120430 - R 93 -13.3 -2.87931 | opp_overlap 4120428 4120427 4120425 TGGATTCTCCAGACA GTTTGGGGGGC CAAG GCCCCCCAAAT GGATATTTGCAAATC YPK_3730 4123157 - 4120479 - | translation initiation factor IF-2 TERM 4319 4122648 - 4122661 + g 77 -3.1 -5.19261 | ACGTGCTTTATCGGT CTGAG CTGG CTTAG TTTTTTCGTCGGTTT YPK_3731 4124669 - 4123182 - | NusA antitermination factor YPK_3732 4125143 - 4124691 - | hypothetical protein TERM 4320 4125181 - 4125168 - R 100 -8.1 -5.80248 | CAAGACATAAAAAAA GGGCT TAAT AGCCC AGTGATTCTGCTGTC TERM 4321 4125231 - 4125203 - R 100 -12.5 -3.90744 | opp_overlap 4125209 4125210, overlap 4125210 TCTGCTGTCAAATAA CAAAAAACCCCGA AAT TCGGGGCTTTATG CAACTGGACCCTGTT TERM 4322 4125209 - 4125225 + r 72 -7.9 -3.87815 | opp_overlap 4125203 4125210, overlap 4125210 GTCAAATAACAAAAA ACCCCGA AAT TCGGGGC TTTATGCAACTGGAC TERM 4323 4125224 - 4125210 - R 100 -11.4 -5.72254 | opp_overlap 4125209 4125210, overlap 4125203 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 4324 4125210 - 4125224 + r 83 -11.4 -2.92475 | opp_overlap 4125210 4125203, overlap 4125209 TCAAATAACAAAAAA CCCCGA AAT TCGGGG CTTTATGCAACTGGA TERM 4325 4125248 - 4125260 + r 76 -10.5 -3.06501 | AACTGGACCCTGTTT GCCGC AAA GCGGC TTCGGTGCAACTCTC TERM 4326 4125360 - 4125346 - R 100 -7.2 -5.79526 | opp_overlap 4125348 ACATTTGAAAAAAAA CACTTT AGG AAAGTG GTTGCGGGGGCCGGA TERM 4327 4125595 - 4125625 + r 74 -9.9 -3.08603 | opp_overlap 4125593, overlap 4125594 GGCACTGATTCAACT GGTTGTTTTTACT GTCCA AGTAACAACAACC CTTTTAAAACTCTTT YPK_3733 4126010 - 4125675 - | preprotein translocase, SecG subunit TERM 4328 4126200 - 4126220 + r 83 -11.1 -3.53761 | TCAGCGTAATTTCTT GGGGAAGAG TGC CTCTCCCCC TTTAAAAAAGGGTTA YPK_3734 4127573 - 4126233 - | phosphoglucosamine mutase TERM 4329 4126684 - 4126674 - G 71 -6.8 -4.24342 | opp_overlap 4126673 TTTGGCACGAACAAA TGGG ATA CCCA GATCTTTCAGGGCTA YPK_3735 4128416 - 4127583 - | dihydropteroate synthase TERM 4330 4128492 - 4128475 - R 100 -11.3 -5.84381 | opp_overlap 4128475 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA TERM 4331 4128475 - 4128492 + r 90 -11.3 -3.71284 | opp_overlap 4128475 TTAGCAACAAAAAAA CCCTAGG CAAG CCTAGGG TTATATTAGTCACAA YPK_3736 4130479 - 4128536 - | ATP-dependent metalloprotease FtsH TERM 4332 4130382 - 4130364 - G 73 -8.2 -3.83205 | ACGTCGGACATGAAA GTAGAGTA ATC CACTCTAC GGCCATTCGATTCGC YPK_3737 4131156 - 4130527 - | ribosomal RNA large subunit methyltransferase J YPK_3738 4131303 - 4131596 + | hypothetical protein TERM 4333 4131618 - 4131628 + T 74 -6.8 -4.35483 | opp_overlap 4131617 4131618 TTGTTTTAGAGAAAG GTGC CAT GCAC TTTGTTCTGATAAAA TERM 4334 4131638 - 4131663 + T 100 -10.5 -4.88405 | opp_overlap 4131644, overlap 4131639 ATGCACTTTGTTCTG ATAAAAGGCCG CTTG CGGCCTTTTAC TTTTCTTTACAACTT TERM 4335 4131639 - 4131662 + T 100 -14 -3.51958 | opp_overlap 4131644, overlap 4131638 TGCACTTTGTTCTGA TAAAAGGCCG CTTG CGGCCTTTTA CTTTTCTTTACAACT TERM 4336 4131657 - 4131644 - T 88 -9.5 -4.36914 | opp_overlap 4131639 4131638 TTTGTTCTGATAAAA GGCCG CTTG CGGCC TTTTACTTTTCTTTA YPK_3739 4132200 - 4131724 - | transcription elongation factor GreA TERM 4337 4132051 - 4132066 + g 74 -4 -4.88918 | gap 1, overlap 4132043 TTGTTGCTCACGGGC TGCGTGA TAT TC-CGCA TTTTCTTTCAAGTCG TERM 4338 4133407 - 4133388 - g 73 -2.2 -5.03715 | gap 1 ATCATGCTGAAAAAA TCAGACAAT ATG ATCG-CTGA CACCGTCTTCAGAAC YPK_3740 4132458 - 4133906 + | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YPK_3741 4133912 - 4134574 + | two component transcriptional regulator YPK_3742 4134571 - 4135638 + | integral membrane sensor signal transduction histidine kinase YPK_3743 4136883 - 4135711 - | GTP-binding protein Obg/CgtA TERM 4339 4136923 - 4136903 - H 71 -3.3 -5.00616 | opp_overlap 4136896 4136904 4136907, overlap 4136907 TTTCTCCGTAAAAAA CCAATAGAT TGT ATCTACTTG TTTTATATTAATTTT TERM 4340 4137123 - 4137089 - H 79 -10.9 -3.12521 | gap 1, overlap 4137087 4137105 TGTATTAAAAGTAGA CAGCTAGCCAGAAAAG GCCG CCTCT-TGGCTAGCTG AACCTTAAACCAGTT TERM 4341 4137275 - 4137265 - H 75 -8.2 -3.78904 | TATCAAAGGCAACAA CCCG CAA CGGG TAATCACTGCGTTTA YPK_3744 4137424 - 4137795 + | hypothetical protein YPK_3745 4138116 - 4137928 - | hypothetical protein YPK_3746 4139171 - 4138569 - | putative phage terminase, small subunit YPK_3747 4139415 - 4139233 - | hypothetical protein TERM 4342 4139517 - 4139537 + r 83 -11.9 -2.62668 | opp_overlap 4139517, overlap 4139516 GCAAATACACAAAAA GCCACTGTT GCT GACAGTGGC CTTGATTGGATAGTA TERM 4343 4139537 - 4139517 - R 100 -11.2 -5.14985 | opp_overlap 4139517 4139516 GCAAATACACAAAAA GCCACTGT TGCTG ACAGTGGC CTTGATTGGATAGTA YPK_3748 4140007 - 4139579 - | hypothetical protein YPK_3749 4140159 - 4140007 - | hypothetical protein YPK_3750 4140656 - 4140246 - | AntA/AntB antirepressor domain-containing protein YPK_3751 4141663 - 4140653 - | hypothetical protein YPK_3752 4141959 - 4141678 - | phage transcriptional regulator, AlpA YPK_3753 4142961 - 4142062 - | hypothetical protein TERM 4344 4143006 - 4143023 + r 74 -6.9 -4.27316 | opp_overlap 4143005 AGTTTAGCGAGACAG GCGGGTA GGGT TTCCCGC TTTTCGGTTGGCCGA YPK_3754 4144283 - 4143060 - | integrase family protein TERM 4345 4143782 - 4143792 + g 78 -5.4 -4.8622 | ATAACCTACCAGCAG TCAC AGG GTGA TTTTTGCTTACAGCA TERM 4346 4144469 - 4144494 + r 79 -6.9 -4.62441 | gap 1, opp_overlap 4144465, overlap 4144469 TCCGTAAATCATTCA CC-GGCTGCTTT TGC AAAGCAACCAGG TTTATTTCTGTCCGA YPK_3755 4145432 - 4144446 - | hypothetical protein TERM 4347 4145491 - 4145469 - R 100 -12 -4.84529 | opp_overlap 4145469 CCAGAAATGTAAAAA GCCCCGCAAC GAA ATTGCAGGGC TTACATCTATTTACA YPK_3756 4145777 - 4145520 - | ribosomal protein L27 YPK_3757 4146108 - 4145797 - | ribosomal protein L21 YPK_3758 4146368 - 4147339 + | polyprenyl synthetase TERM 4348 4147367 - 4147385 + T 89 -10.3 -3.93236 | opp_overlap 4147367 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG TERM 4349 4147385 - 4147367 - T 89 -10.3 -3.96224 | opp_overlap 4147367 GAAATTATTTAGAAA CCCGGAT TCACC ATCCGGG TTTATCCCATTAATG YPK_3759 4147783 - 4147436 - | MuA-transposase/repressor protein CI DNA-binding TERM 4350 4147834 - 4147824 - H 73 -2.6 -5.16969 | GACACAAAAAAGAAA TTTT TAG AAAA CATTTAAATTTTTTT YPK_3760 4147967 - 4148242 + | putative transcriptional regulator, Nlp TERM 4351 4148340 - 4148372 + T 95 -7.8 -5.08178 | opp_overlap 4148340 ATCATTACAATATCA GGGGCTACTG TTCGTACTCTTTT CAGTAGCCCC TTTTTATCTCTATAT TERM 4352 4148626 - 4148611 - T 74 -10.4 -2.59431 | overlap 4148607 GCCTCGCAGAAGCGA GGCCCA TGGA TGGGCC GAGTAACGCTTGCAG YPK_3761 4149614 - 4148676 - | malate dehydrogenase, NAD-dependent YPK_3762 4150078 - 4150548 + | arginine repressor, ArgR TERM 4353 4150595 - 4150577 - f 75 -7.4 -4.3129 | opp_overlap 4150577 CACCGAGCAGTAAAA TGCGGC CTTATGT GCCGCA TTATCTCACCCTCGC YPK_3763 4150937 - 4151200 + | hypothetical protein YPK_3764 4151296 - 4151159 - | hypothetical protein TERM 4354 4151304 - 4151330 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4151293, overlap 4151299 4151305 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4355 4151305 - 4151331 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4151293, overlap 4151299 4151304 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4356 4151394 - 4151417 + r 85 -9.6 -4.12188 | overlap 4151396 TTGTCAGCAGTCTGC AATGCCCCAT TAAC ATGGGGCATA TTTTCAAGATGATGA TERM 4357 4151396 - 4151415 + r 93 -12.2 -3.6581 | overlap 4151394 GTCAGCAGTCTGCAA TGCCCCAT TAAC ATGGGGCA TATTTTCAAGATGAT YPK_3765 4152881 - 4151496 - | UDP-N-acetylmuramate TERM 4358 4153327 - 4153337 + G 75 -5.4 -4.72272 | opp_overlap 4153325 4153327 CTCCGAAGAAGAAGA TGAC ATT GTCA TTTTTGATGGCGGAA TERM 4359 4154016 - 4154006 - g 73 -5.4 -4.63218 | TTCGTGGGAACAAAA TCCA TGG TGGA AGATGCGGAAGGGTT YPK_3766 4152947 - 4154065 + | inositol phosphatase/fructose-16-bisphosphatase TERM 4360 4154125 - 4154105 - f 100 -13.3 -3.40836 | opp_overlap 4154105, overlap 4154097 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC TERM 4361 4154105 - 4154125 + F 100 -11.1 -5.72622 | opp_overlap 4154105 4154097 TCAAAAATAAGCTAA CAGCGGCCT TTT AAGCCGCTG TTTTTTATTTCTAAC TERM 4362 4154167 - 4154150 - f 86 -7.7 -4.72029 | opp_overlap 4154152, overlap 4154145 TCTAACGGAATAAAA TAGCCCG ACTT CAGGCTA TCTCAACGTCATCTG YPK_3767 4154265 - 4154792 + | inorganic diphosphatase TERM 4363 4154817 - 4154868 + T 100 -9.4 -5.84381 | gap 1, opp_overlap 4154817 4154835 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 4364 4154868 - 4154817 - T 100 -7.2 -5.60993 | gap 1, opp_overlap 4154817, overlap 4154835 TCGCCTATAAAAAAA CACCGCCTATCGTGAACAGGCCCCA AAA TAGGGCC-GTTTACCTTGTGCGGTG TTTTTTTGTTACTGC TERM 4365 4154851 - 4154835 - T 73 -10.1 -3.04144 | opp_overlap 4154817, overlap 4154817 CGCCTATCGTGAACA GGCCCCA AAA TAGGGCC GTTTACCTTGTGCGG YPK_3768 4155266 - 4154910 - | AIG2 family protein YPK_3769 4159144 - 4155269 - | hypothetical protein YPK_3770 4160877 - 4159141 - | surface antigen (D15) TERM 4366 4161667 - 4161641 - g 83 -7.3 -4.68424 | CAAGCCATGGAAAAA GCCGGTGATCA ACGGG TGATTACCAGC GAAATTACGGTTGCC YPK_3771 4161152 - 4161790 + | peptide methionine sulfoxide reductase TERM 4367 4162719 - 4162734 + G 73 -7.6 -4.12738 | CCTTCCTCCATGACT TCACGT GAAA ACGTGA TTTACTTTGATCTAC YPK_3772 4162068 - 4163399 + | hypothetical protein TERM 4368 4163436 - 4163461 + T 77 -10.4 -3.14468 | opp_overlap 4163439, overlap 4163439 TGATCACGGTAAACA TAACGGCCCC TGAGTT GGGGCCGTGA TTAAATCTGCTCAGG TERM 4369 4163439 - 4163458 + T 83 -12.1 -2.77658 | opp_overlap 4163439, overlap 4163436 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC TERM 4370 4163458 - 4163439 - T 100 -12.1 -3.82946 | opp_overlap 4163439 4163436 TCACGGTAAACATAA CGGCCCC TGAGTT GGGGCCG TGATTAAATCTGCTC YPK_3773 4163719 - 4163507 - | hypothetical protein TERM 4371 4164601 - 4164573 - g 95 -15.3 -2.84812 | opp_overlap 4164571 4164571, overlap 4164595 ACTGACATCAGCAGA GGTGCAGCAGGTC ATC GACCAACTGCACC AACTTGTGCAGCAAT YPK_3774 4164055 - 4164618 + | hypothetical protein YPK_3775 4165361 - 4164621 - | 3'(2'),5'-bisphosphate nucleotidase YPK_3776 4165808 - 4167766 + | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 4372 4167867 - 4167835 - f 76 -9.4 -3.47573 | opp_overlap 4167835 4167842 GGAGTTATATCACAA TCTATAACATGTAT TTATC ATGCATGTTATAGA TGTATAATTACTCAA TERM 4373 4167835 - 4167867 + F 83 -11.6 -3.02096 | opp_overlap 4167835, overlap 4167842 GGAGTTATATCACAA TCTATAACATGTAT TTATC ATGCATGTTATAGA TGTATAATTACTCAA YPK_3777 4167895 - 4168560 + | hypothetical protein TERM 4374 4168640 - 4168608 - T 100 -22.9 -4.44046 | opp_overlap 4168615, overlap 4168609 CTTATCGTAAATAAA CGCCAAAGGGCGACA CCC TGTCGCCCTTTGGCA TAATCGGTACCAAGG TERM 4375 4168639 - 4168609 - T 100 -24.2 -3.25946 | opp_overlap 4168615, overlap 4168608 TTATCGTAAATAAAC GCCAAAGGGCGACA CCC TGTCGCCCTTTGGC ATAATCGGTACCAAG TERM 4376 4168615 - 4168633 + T 100 -14.6 -3.62275 | opp_overlap 4168609 4168608 TAAATAAACGCCAAA GGGCGACA CCC TGTCGCCC TTTGGCATAATCGGT YPK_3778 4169278 - 4168658 - | peptidylprolyl isomerase FKBP-type YPK_3779 4169596 - 4170336 + | opacity-associated protein A YPK_3780 4170476 - 4170931 + | hypothetical protein TERM 4377 4170976 - 4170948 - T 100 -14 -3.29312 | opp_overlap 4170953, overlap 4170953 ACCGATAACCAAAAG CAAAACGCCAGC ACTAG GCTGGCGTTTTA ACAGGTTACAGCCGC TERM 4378 4170971 - 4170953 - T 100 -11.7 -4.72729 | opp_overlap 4170953, overlap 4170948 TAACCAAAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA TERM 4379 4170953 - 4170971 + T 100 -11.7 -4.11484 | opp_overlap 4170948 4170953 TAACCAAAAGCAAAA CGCCAGC ACTAG GCTGGCG TTTTAACAGGTTACA YPK_3781 4171449 - 4170997 - | ribosomal protein L9 YPK_3782 4171716 - 4171489 - | ribosomal protein S18 YPK_3783 4171888 - 4171721 - | primosomal replication protein N YPK_3784 4172439 - 4172047 - | ribosomal protein S6 TERM 4380 4172094 - 4172119 + g 71 -9.1 -3.50832 | gap 1, overlap 4172090 4172093 CATTGGCTTCTGACG CGAA-GTCGTGA CGC TCACGGCGTTCG TCTTTCGCTTTAACC YPK_3785 4172731 - 4172453 - | hypothetical protein YPK_3786 4173556 - 4172807 - | phospholipase/carboxylesterase YPK_3787 4173747 - 4174058 + | hypothetical protein YPK_3788 4175773 - 4174130 - | acyl-CoA dehydrogenase domain-containing protein YPK_3789 4176001 - 4175813 - | hypothetical protein TERM 4381 4175934 - 4175913 - G 74 -3 -5.08088 | opp_overlap 4175914, overlap 4175914 AATTCCCAACAAAAA GCCAACAT ACAAAG ATGTTGGT TTGAGGTTATTGACA TERM 4382 4176013 - 4176039 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4176002, overlap 4176008 4176014 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4383 4176014 - 4176040 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4176002, overlap 4176008 4176013 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4384 4176103 - 4176124 + r 75 -8.8 -3.60098 | TTGTCAGCAGTCTGA GCCAACAT ACAAAG ATGTTGGC TTTAGGCTGCGGAGT YPK_3790 4176921 - 4176181 - | RNA methyltransferase TERM 4385 4177006 - 4176982 - R 74 -10 -3.08072 | gap 1 AATAATTAAATTATA TG-CGGGCGAC AAAA GCCGCCCGGCA AGTAGCACACCACCA YPK_3791 4179574 - 4177040 - | ribonuclease R TERM 4386 4177229 - 4177243 + g 100 -9.2 -4.82901 | ATTTACCGGTTTTTT CGCCCG ACG TGGGCG TTTTTGTCCACCCGC TERM 4387 4178171 - 4178160 - G 76 -7.2 -4.36914 | opp_overlap 4178159 TGTTTTTCCACAAAA CGCG CCGC CGCG ATATTCGCCAGAATC TERM 4388 4179845 - 4179814 - R 84 -5.1 -5.30155 | overlap 4179818 TTATTAAGTAAAAAA CCTACTCAACAAG TAATAG CTTGTAGAGCGGG GAATTATCTTTAACC YPK_3792 4180279 - 4179815 - | BadM/Rrf2 family transcriptional regulator TERM 4389 4180513 - 4180542 + r 100 -13.7 -3.53224 | opp_overlap 4180513 4180516 4180520, overlap 4180516 4180520 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4390 4180542 - 4180513 - R 100 -15.9 -2.80816 | opp_overlap 4180513 4180516 4180520, overlap 4180516 4180520 GCTGGATGTATTAGA CAATAAACCGGAC ATCA GCCCGGTTTATTG TTTCGAACACAAATA TERM 4391 4180516 - 4180539 + r 81 -9.6 -3.90744 | opp_overlap 4180516 4180513 4180520, overlap 4180513 4180520 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4392 4180539 - 4180516 - R 91 -11.8 -3.55447 | opp_overlap 4180513 4180516 4180520, overlap 4180513 4180520 GGATGTATTAGACAA TAAACCGGAC ATCA GCCCGGTTTA TTGTTTCGAACACAA TERM 4393 4180535 - 4180520 - R 87 -8.2 -4.41114 | opp_overlap 4180516 4180513 4180520, overlap 4180516 4180513 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC TERM 4394 4180520 - 4180535 + r 73 -6 -4.56978 | opp_overlap 4180520 4180516 4180513, overlap 4180516 4180513 GTATTAGACAATAAA CCGGAC ATCA GCCCGG TTTATTGTTTCGAAC YPK_3793 4181927 - 4180629 - | adenylosuccinate synthase TERM 4395 4181183 - 4181199 + g 72 -10.1 -3.06796 | overlap 4181185 CAGAGCCTGTCGCTA CGCCACC CGC GGTGGTG TTAGATGAGGTGACA TERM 4396 4181415 - 4181438 + g 79 -10.4 -3.67976 | opp_overlap 4181408, overlap 4181409 4181419 GTAATGCACCAACTG GAAGTTGTGG TATT CCACAATTTC TTTCAGCTTGATAGC TERM 4397 4181419 - 4181434 + g 78 -7.6 -4.46233 | opp_overlap 4181408, overlap 4181409 4181415 TGCACCAACTGGAAG TTGTGG TATT CCACAA TTTCTTTCAGCTTGA TERM 4398 4181557 - 4181567 + g 77 -6.8 -4.57341 | GTACCGATAGCTTTT GCAC CAC GTGC TTTTTCACGCGCATT YPK_3794 4182281 - 4182027 - | hypothetical protein TERM 4399 4182291 - 4182273 - G 85 -9.5 -4.43213 | TTCAACACATGAAAA GGCCCGC ACTAG ACGGGCC TCGGTGTTACGTTCA YPK_3795 4183409 - 4182405 - | HflC protein YPK_3796 4184675 - 4183413 - | HflK protein TERM 4400 4184503 - 4184516 + g 76 -2.3 -5.19261 | CCGCTACCTTTGCCA CCGAG GCTA CTCAG TTTTTTGCTCAGTTT YPK_3797 4186202 - 4184916 - | GTP-binding proten HflX YPK_3798 4186314 - 4186195 - | hypothetical protein YPK_3799 4186606 - 4186301 - | RNA chaperone Hfq YPK_3800 4187664 - 4186723 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 4401 4187163 - 4187145 - G 100 -3.9 -6.23545 | gap 1, opp_overlap 4187152 4187153, overlap 4187147 CTGAAATAAAAAAAA CT-TCCAG TGCT CTGGAGAG CCTTTGGGGATCATT YPK_3801 4189564 - 4187657 - | DNA mismatch repair protein MutL YPK_3802 4191493 - 4189580 - | N-acetylmuramoyl-L-alanine amidase TERM 4402 4189777 - 4189791 + g 75 -11.4 -2.72511 | overlap 4189776 CTGCCGTTACCGTAC TGCCCG ACG CGGGCA CTTTCAACCGCTGGC TERM 4403 4191024 - 4191048 + g 74 -2.8 -5.04601 | gap 1 ACCGTGTAGTTATTG CCCG-ACTGTT GGGT GACAGCACGGG TTTTTACTTTCTGCG TERM 4404 4191073 - 4191087 + g 72 -5.7 -4.36433 | TCTGCGTCAGTTCCA GTACC AGGCG GGTAC TTTGTTCATCTTTCG YPK_3803 4191971 - 4191501 - | hypothetical protein YPK_3804 4193496 - 4191982 - | carbohydrate kinase, YjeF related protein TERM 4405 4192440 - 4192452 + g 78 -9.1 -3.97602 | TAAGTGCATCCGCAT CCCAC AAT GTGGG TTTATCACTCTGTTG TERM 4406 4193571 - 4193589 + H 71 -8.2 -3.53012 | opp_overlap 4193570 TAGGTTTCCAGCAAG TCGGTATT TGC GATACCGA TTTGACGGCGGAAGA TERM 4407 4193667 - 4193649 - g 77 -10.3 -3.59087 | AATATCATGGCGAAA TGGCGTG GATGG CACGCCA CGGTATGCTGCGTGC TERM 4408 4193793 - 4193776 - g 73 -8.5 -3.86202 | opp_overlap 4193779, overlap 4193779 TGCCAGTACATTAAA TAACCCA GAAT TGGGTTA TGTCAGCCGCTATGC YPK_3805 4193591 - 4194730 + | iron-sulfur cluster binding protein TERM 4409 4194815 - 4194796 - f 84 -2.9 -5.69262 | gap 1 GCATAAAAATAAAAA TGC-CTTG GCAAT CAAGTGCA AAAAAAAGCACAAGT TERM 4410 4195075 - 4195091 + F 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4411 4195218 - 4195234 + F 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA TERM 4412 4195266 - 4195296 + F 89 -7 -5.40464 | overlap 4195267 CTATTCCCGCGTCGC CTGTATAAATACCC ATT GGTTATTTATACAC TTTTTATTTCTGATG TERM 4413 4195267 - 4195295 + F 86 -10.5 -3.82652 | overlap 4195266 TATTCCCGCGTCGCC TGTATAAATACCC ATT GGTTATTTATACA CTTTTTATTTCTGAT TERM 4414 4195385 - 4195401 + F 76 -10.9 -2.62616 | TCGAACTCGCGACCC CGACCTT GGC AAGGTCG TGCTCTACCAACTGA YPK_3807 4195435 - 4195833 + | hypothetical protein TERM 4415 4196019 - 4196002 - T 77 -6.3 -4.71776 | TAAGATTGAATAAAA TGCTCAC GATA GTAAGCA AGCTCGGCGACTGAC YPK_3808 4196669 - 4195986 - | exonuclease RNase T and DNA polymerase III YPK_3809 4196731 - 4197783 + | ribosome small subunit-dependent GTPase A TERM 4416 4198168 - 4198196 + F 70 -5.8 -4.38141 | overlap 4198170 GAAGGGTCTGACAGG GTGGGCGCAGAG CGATA CAATGCGCCCCC TTATTTTATCTAACG YPK_3810 4198231 - 4199112 + | phosphatidylserine decarboxylase TERM 4417 4199823 - 4199813 - g 80 -4.6 -5.04175 | overlap 4199814 CGAATTATACAAAAA GCGC GAA GCAC GGGTTCAGGCTCAGC TERM 4418 4200960 - 4200970 + G 71 -4.6 -4.59109 | opp_overlap 4200955, overlap 4200955 CCAACACAAGTTGCG CGCG CAA TGCG TTTTTACCGCCTGTC TERM 4419 4201328 - 4201362 + G 85 -12.3 -3.30701 | gap 1, opp_overlap 4201327 4201330, overlap 4201330 4201357 AGTGGTCTATCATAT TAT-CCGCCGTTGGAT GCTG ATCCAGCGGCGGCGTA TTGCCTTTGATCGCG TERM 4420 4201330 - 4201359 + G 87 -14.3 -2.52602 | opp_overlap 4201327 4201330, overlap 4201328 4201357 TGGTCTATCATATTA TCCGCCGTTGGAT GCTG ATCCAGCGGCGGC GTATTGCCTTTGATC TERM 4421 4201359 - 4201330 - g 78 -12.1 -2.66316 | opp_overlap 4201330 4201328 4201357, overlap 4201327 TGGTCTATCATATTA TCCGCCGTTGGAT GCTG ATCCAGCGGCGGC GTATTGCCTTTGATC TERM 4422 4201412 - 4201385 - g 72 -11.3 -2.71364 | gap 1, opp_overlap 4201383 TGATCGCGCCAAGCA GCGCCGCGCCGA TATTC TC-GCGCAGCGC GCCCGTGGTGAGGAA YPK_3811 4199154 - 4202495 + | MscS mechanosensitive ion channel TERM 4423 4202519 - 4202545 + T 82 -5.9 -4.97405 | gap 1, opp_overlap 4202519 4202521, overlap 4202521 AGTAAGAAATAAAAA TGCCCTGCGCCT TCAC AGGT-CAGGGTA TTTGTTTTTGTAAGT TERM 4424 4202540 - 4202519 - T 91 -6.5 -5.48514 | opp_overlap 4202519 4202521, overlap 4202521 AGTAAGAAATAAAAA TGCCCTGCG CCTT CACAGGTCA GGGTATTTGTTTTTG YPK_3812 4203717 - 4202740 - | lysyl-tRNA synthetase-related protein GenX YPK_3813 4204175 - 4205998 + | fumarate reductase, flavoprotein subunit YPK_3814 4205991 - 4206725 + | succinate dehydrogenase and fumarate reductase iron-sulfur protein TERM 4425 4206801 - 4206812 + G 73 -2.2 -5.10064 | overlap 4206781 4206788 CTGGTGGCAACAGCT TGGT TTCT ACCG TTTTTATATGTTGCG YPK_3815 4206742 - 4207134 + | fumarate reductase subunit C YPK_3816 4207151 - 4207507 + | fumarate reductase D subunit TERM 4426 4207533 - 4207555 + T 100 -13.4 -4.0825 | CACATGCCATATTCG CGGCCTGCTG TTC TGGCAGGCCG TTCTTTGGTTAAAGC YPK_3817 4208133 - 4207672 - | small multidrug resistance protein TERM 4427 4207874 - 4207860 - G 77 -4.2 -5.09762 | AGGCCAATAGAAAAA CACTGG CAG CCATTG CGACGAGGGTAATAA TERM 4428 4208141 - 4208127 - G 71 -4.9 -4.53163 | opp_overlap 4208127 4208122, overlap 4208119 4208122 CCAGATAGCAGAAAA CCGCC ATTTA AGCGG TTTCCTTTCGTTCTT YPK_3818 4208799 - 4208233 - | translation elongation factor P TERM 4429 4208691 - 4208706 + g 77 -8.2 -4.1466 | opp_overlap 4208681 4208690 4208691 TAACACGCGCAAAAG CCTGGC CTTT GCCGGG TTTTACGAATTCGCT YPK_3819 4208859 - 4209863 + | lysine 2,3-aminomutase YodO family protein TERM 4430 4210097 - 4210044 - f 100 -16.9 -3.33696 | overlap 4210045 TTCCCCTTCAATTAA CGTTGTCAGCAGCCTCAGGGGATAC CTTA GTATCCCCTCAGACTACTGACAAAC CCCGATGACGCGATC TERM 4431 4210096 - 4210045 - f 100 -20.4 -2.60075 | overlap 4210044 TCCCCTTCAATTAAC GTTGTCAGCAGCCTCAGGGGATAC CTTA GTATCCCCTCAGACTACTGACAAA CCCCGATGACGCGAT TERM 4432 4210169 - 4210143 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 4210152, overlap 4210144 4210159 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4433 4210170 - 4210144 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 4210152, overlap 4210143 4210159 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4434 4210246 - 4210270 + G 100 -9.4 -4.88918 | gap 1, opp_overlap 4210244, overlap 4210248 CTTTGTCAATAACCT CA-GGGGATAC CTTA GTATCCCCCTG TTTTGTTTACGATGA TERM 4435 4210248 - 4210267 + G 81 -12.2 -3.02684 | opp_overlap 4210244, overlap 4210246 TTGTCAATAACCTCA GGGGATAC CTTA GTATCCCC CTGTTTTGTTTACGA YPK_3820 4210182 - 4210295 + | hypothetical protein YPK_3821 4210733 - 4210335 - | hypothetical protein TERM 4436 4211281 - 4211250 - R 100 -16.8 -4.38154 | opp_overlap 4211255 4211275, overlap 4211255 ACAGTCTTCACAAAA TAAAAGCGAGCAGG TCAC CCTACTCGCTTTTA TCAACAGCTTTACCT TERM 4437 4211255 - 4211276 + r 93 -10.1 -4.37658 | opp_overlap 4211250 4211255, overlap 4211275 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT TERM 4438 4211276 - 4211255 - R 100 -12.3 -5.18371 | opp_overlap 4211255 4211275, overlap 4211250 CTTCACAAAATAAAA GCGAGCAGG TCAC CCTACTCGC TTTTATCAACAGCTT YPK_3822 4213004 - 4211358 - | chaperonin GroEL TERM 4439 4212373 - 4212383 + g 71 -6.8 -4.25056 | opp_overlap 4212372 TCAAGTTCAATAGAG CCAG TTT CTGG TTTATTGATGAAGTA YPK_3823 4213344 - 4213051 - | chaperonin Cpn10 YPK_3824 4214186 - 4213599 - | FxsA cytoplasmic membrane protein YPK_3825 4214610 - 4216046 + | aspartate ammonia-lyase TERM 4440 4216071 - 4216099 + F 86 -6.8 -5.04601 | gap 2 TCGGTAGCCCTCTAA GGCACGTATGCTCC TCT GGA-CA-GCGTGCC TTTTTACTTTCTGGC YPK_3826 4216166 - 4217467 + | anaerobic c4-dicarboxylate antiporter TERM 4441 4217471 - 4217502 + F 77 -10.2 -3.18511 | gap 1, overlap 4217476 CTGGTTCTGTAATCT GTCTGATGGGGCGCA TCA TGCGCCCCAATA-AC TTCGGTCTATCTCTC TERM 4442 4217476 - 4217498 + F 91 -13.4 -2.56571 | overlap 4217471 TCTGTAATCTGTCTG ATGGGGCGCA TCA TGCGCCCCAA TAACTTCGGTCTATC TERM 4443 4217546 - 4217559 + F 71 -9.5 -2.91126 | overlap 4217542 TCATCTTCTGACTGG CCCCG GCTT CGGGG TATAGTATGATTTGT TERM 4444 4217873 - 4217838 - g 74 -9.2 -3.75629 | gap 1 TACTGGGAAGGTAAA CTCGAACAAGAGTATGA GGT TCAG-CTCTTGTTCAAG AGCAATACTGACCAT YPK_3827 4217652 - 4218011 + | CutA1 divalent ion tolerance protein YPK_3828 4217987 - 4219774 + | protein-disulfide reductase TERM 4445 4219818 - 4219776 - T 100 -8.3 -4.77173 | overlap 4219778 CGGTTACAAAATAAA TAGCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATCAA CGCTCAATCACGACA TERM 4446 4219816 - 4219778 - T 90 -10.9 -3.99938 | overlap 4219776 GTTACAAAATAAATA GCTGTCGCCACGGCGAG TAGGT CTCGCCGTGGCATAATC AACGCTCAATCACGA YPK_3829 4221983 - 4219836 - | formate dehydrogenase, alpha subunit YPK_3830 4222563 - 4222006 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YPK_3831 4224601 - 4222586 - | glutamate synthase, small subunit TERM 4447 4224012 - 4224024 + g 78 -5.5 -4.87803 | AGGTTAACCGGTGTT GCGTC GCG GATGC TTTTATTTGACGATG TERM 4448 4224094 - 4224110 + g 83 -9.4 -4.35461 | overlap 4224079 CATTGTGCTCATTCA GCGCCA TGTGT TGGCGC TTTTGCTGCTGTTGA TERM 4449 4224160 - 4224174 + g 73 -7.1 -4.2558 | CCACCAAGGTCAGAG CCTGC GTAGG GCAGG TTTTAATACAGGCTG TERM 4450 4224473 - 4224491 + g 79 -11.8 -3.14126 | opp_overlap 4224472, overlap 4224464 ATCGCCTTTGAATAC TTTCACCC GTG GGGTGAAA TATTCCGGTTTATCA TERM 4451 4224928 - 4224918 - H 71 -8.2 -3.42621 | opp_overlap 4224924 AACGTCAACCGACAA CGGG GTG CCCG TAAAGATAGGGCTAT YPK_3832 4225021 - 4225596 + | TetR family transcriptional regulator TERM 4452 4225783 - 4225767 - T 76 -10.9 -2.62616 | opp_overlap 4225766 4225765 4225762 TCAGTCGGTAGAGCA GGGGATT GAA AATCCCC GTGTCCTTGGTTCGA TERM 4453 4225828 - 4225847 + T 100 -11.4 -4.84527 | opp_overlap 4225827 4225828 ACCACTATTTATAAG GCCTCGCT GCAA AGCGGGGC TTTTTCGTATCTGGA YPK_3834 4228805 - 4226250 - | peptidase M60 viral enhancin protein YPK_3835 4229002 - 4228835 - | hypothetical protein YPK_3836 4229061 - 4229180 + | hypothetical protein YPK_3837 4229232 - 4229657 + | hypothetical protein TERM 4454 4229693 - 4229708 + T 89 -7.5 -5.05116 | opp_overlap 4229647 4229693 TTTAATGTCAACGAA CCCGC CAATGT GCGGG TTTTGTTATTTCTAA YPK_3838 4229995 - 4229720 - | IS1 transposase YPK_3839 4230359 - 4230093 - | hypothetical protein YPK_3840 4230513 - 4231547 + | DMT superfamily L-rhamnose-proton symporter TERM 4455 4231613 - 4231643 + T 86 -11.3 -3.25896 | gap 1, opp_overlap 4231612, overlap 4231616 TAAAGATGATGATAT TGACGGGCAGCGTT GAAA AAC-CTGCCCGTTA TCTTATGGCTAATCG TERM 4456 4231616 - 4231640 + T 88 -10.8 -3.76568 | gap 1, opp_overlap 4231612, overlap 4231613 AGATGATGATATTGA CGGGCAGCGTT GAAA AAC-CTGCCCG TTATCTTATGGCTAA YPK_3841 4232568 - 4231696 - | AraC family transcriptional regulator YPK_3842 4233522 - 4232701 - | AraC family transcriptional regulator TERM 4457 4233543 - 4233562 + r 72 -9.2 -3.10164 | GCCCTCTTTCGACAG GCACGGCG AAAT CGCCCTGC TTCAGTCCTCGATAG YPK_3843 4233747 - 4233604 - | hypothetical protein YPK_3844 4233920 - 4233744 - | phosphoribosylaminoimidazol (AIR) synthetase YPK_3845 4233958 - 4235376 + | rhamnulokinase YPK_3846 4235373 - 4236629 + | L-rhamnose isomerase TERM 4458 4237120 - 4237107 - g 74 -3.8 -4.88067 | AGTTATGTACAAAAA CTGG AGAACG CCAG CTTCACGCGCCTGTT YPK_3847 4236642 - 4237466 + | rhamnulose-1-phosphate aldolase YPK_3848 4237533 - 4238681 + | lactaldehyde reductase YPK_3849 4238695 - 4239009 + | L-rhamnose 1-epimerase TERM 4459 4239186 - 4239167 - T 100 -15 -3.52073 | opp_overlap 4239165 4239179 TCCTGAATACTAGAA CCGCGCCA TCCG TGGCGCGG CCGTTTAAAGCTAAT YPK_3850 4239823 - 4239275 - | single-strand binding protein YPK_3851 4240281 - 4243124 + | excinuclease ABC, A subunit TERM 4460 4243163 - 4243129 - T 74 -9.4 -3.35088 | gap 1, overlap 4243132 AAACCGTTTAATGAA CCACTCTGGGGCAAT CAATGT ATTGCTCCAGAG-GG TATGACATTCAGCGT TERM 4461 4243161 - 4243132 - T 77 -10.8 -2.84098 | overlap 4243129 CCGTTTAATGAACCA CTCTGGGGCAAT CAATGT ATTGCTCCAGAG GGTATGACATTCAGC YPK_3852 4243576 - 4243217 - | hypothetical protein TERM 4462 4243996 - 4243977 - R 72 -9.2 -3.18582 | overlap 4243980 GAGGTTATTGACCAA GTACCCGC GACG GCGGGAAC CGGCAAGCCGTAAAA TERM 4463 4243993 - 4243980 - R 70 -9.5 -2.79098 | overlap 4243977 GTTATTGACCAAGTA CCCGC GACG GCGGG AACCGGCAAGCCGTA YPK_3853 4245296 - 4244103 - | aromatic-amino-acid transaminase YPK_3854 4246561 - 4245482 - | alanine racemase TERM 4464 4245778 - 4245768 - G 71 -8.2 -3.727 | GCGATCACACCTAAA CGCG TAT CGCG CTCACTGACCCAGGT TERM 4465 4245935 - 4245955 + g 73 -9.7 -3.28712 | opp_overlap 4245948 CAGCACAATCCCTGG GCGCACC CAATCAC GGTGCGC TTGTGGCCACCGCAG YPK_3855 4248013 - 4246658 - | replicative DNA helicase TERM 4466 4247413 - 4247423 + g 70 -2.4 -4.84359 | GATCGGATTTTTGTA GCCC AGC GGTC TTTTTATCGAGATCA TERM 4467 4249187 - 4249165 - g 71 -2.6 -4.99134 | overlap 4249166 ATTCTAAACCAAAAA GGGGGGAT CTATGTC ACCCGCCC TTCACTGAATGTCTA YPK_3856 4248397 - 4249380 + | alcohol dehydrogenase TERM 4468 4249419 - 4249446 + T 89 -12.7 -2.78395 | opp_overlap 4249419, overlap 4249412 4249411 4249421 4249423 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4469 4249446 - 4249419 - T 100 -14.9 -4.69664 | opp_overlap 4249412 4249411 4249419 4249421 4249423 TACATGATTGAAAAA CAGAGGGCCCC GATTAA GGAGCCCTCTG TCATTACACTTTCTT TERM 4470 4249421 - 4249444 + T 71 -9.5 -2.9296 | opp_overlap 4249419, overlap 4249419 4249412 4249411 4249423 CATGATTGAAAAACA GAGGGCCCC GATTAA GGAGCCCTC TGTCATTACACTTTC TERM 4471 4249522 - 4249538 + T 71 -3 -5.03994 | gap 1, opp_overlap 4249516, overlap 4249523 TCACGTAAATGAACG T-GCCGT TTAT ACGGCTA TTTTTATCTCTAACA TERM 4472 4249523 - 4249536 + T 76 -8.1 -4.14422 | opp_overlap 4249516, overlap 4249522 CACGTAAATGAACGT GCCGT TTAT ACGGC TATTTTTATCTCTAA YPK_3857 4249943 - 4249725 - | phage shock protein G TERM 4473 4250349 - 4250316 - R 100 -15.5 -3.13908 | overlap 4250344 AAGTGAATGAGTGAA CCCCGAATCACTTAC GCCA GTAAATAATTCGGGG GCCCAATTTGCCGAA YPK_3858 4251496 - 4250459 - | YjbN family TIM-barrel protein TERM 4474 4251808 - 4251774 - g 95 -12.2 -4.36411 | TATCAATCAGGAAAA GCTGCTCGCACAAGCT GAA AGCCTGTGCCAACAAC GAAACGTCCGGCTGA YPK_3859 4251748 - 4252260 + | ferric uptake regulator family protein TERM 4475 4252414 - 4252386 - T 78 -9 -3.88015 | gap 1, opp_overlap 4252390, overlap 4252388 4252390 TAGAGAATCATGAAA TAGAGCCGTACCT CAAC AGGCACGGCT-TA TTATTCTGGGAGGAA TERM 4476 4252413 - 4252388 - T 78 -9.7 -3.51793 | opp_overlap 4252390, overlap 4252386 4252390 GAGAATCATGAAATA GAGCCGTACCT CAAC AGGCACGGCTT ATTATTCTGGGAGGA TERM 4477 4252411 - 4252390 - T 95 -12.3 -3.32233 | opp_overlap 4252390, overlap 4252388 4252386 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG TERM 4478 4252390 - 4252411 + T 86 -10.1 -4.02817 | opp_overlap 4252390 4252388 4252386 GAATCATGAAATAGA GCCGTACCT CAAC AGGCACGGC TTATTATTCTGGGAG YPK_3860 4253049 - 4252441 - | LexA family transcriptional regulator TERM 4479 4252631 - 4252643 + g 71 -4.8 -4.52589 | ACAACTTGCCCATTA CGCA CATCC TGCG TTTTATGTACCGCCA YPK_3861 4253545 - 4253174 - | diacylglycerol kinase TERM 4480 4253631 - 4253621 - H 71 -6.8 -4.18401 | opp_overlap 4253621 CCACAGATCTCAAAA CCAG TTT CTGG TATCCTTGCGACGAA TERM 4481 4253752 - 4253737 - g 77 -6.8 -4.57341 | AATTGTTGGTAAAAA GCAAGG TTAT CCCTGC AGATCCGGTCTCTGA YPK_3862 4253673 - 4256159 + | glycerol-3-phosphate O-acyltransferase TERM 4482 4256206 - 4256186 - T 93 -12.5 -3.0644 | opp_overlap 4256187, overlap 4256177 ACTCAATGCTTAACA GCCCCCTGC CTA GCAGGGGGT TTTCTGAATACCATA TERM 4483 4256187 - 4256205 + T 100 -16 -4.42653 | opp_overlap 4256177 4256186 CTCAATGCTTAACAG CCCCCTGC CTA GCAGGGGG TTTTCTGAATACCAT TERM 4484 4256248 - 4256226 - T 95 -11.3 -3.89291 | opp_overlap 4256226, overlap 4256217 TGAATACCATAACAA TGGCCGGAC TCATT ATCCGGCCA TTTTTTACCATTACC TERM 4485 4256226 - 4256248 + T 100 -10.6 -5.09426 | opp_overlap 4256217 4256226 TGAATACCATAACAA TGGCCGGA CTCATTA TCCGGCCA TTTTTTACCATTACC YPK_3863 4257206 - 4256340 - | 4-hydroxybenzoate polyprenyl transferase YPK_3864 4257912 - 4257388 - | chorismate lyase TERM 4486 4257980 - 4257968 - H 72 -7.7 -3.87925 | AATTAGTAAACAGAA CGCTA TTG TAGCG CAGAATAGGTACCCG TERM 4487 4258494 - 4258482 - H 70 -2.7 -5.01823 | ACAATAACAAGAAAA TTCCT ACA AAGAA TTAGCCGGGTCTTAT TERM 4488 4258992 - 4258956 - g 75 -8 -4.21933 | overlap 4258958 CGAAGGTGAAAATAA CACCGCGATATCCCTG TTCGG CACGGATATCGCCGTT GAGACCCGGCCAGGT TERM 4489 4258990 - 4258958 - g 79 -10.6 -3.70108 | overlap 4258956 AAGGTGAAAATAACA CCGCGATATCCCTG TTCGG CACGGATATCGCCG TTGAGACCCGGCCAG TERM 4490 4261329 - 4261309 - g 72 -11.1 -2.50816 | overlap 4261308 CGGTTAGTGATCAAC GGCGATGCC ACC GGCACCACC TCGGTCCGGGTGAAC YPK_3865 4258744 - 4262553 + | outer membrane autotransporter TERM 4491 4262781 - 4262807 + T 72 -10.1 -2.88849 | gap 1, opp_overlap 4262770, overlap 4262776 4262782 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4492 4262782 - 4262808 + T 84 -10.1 -3.82218 | gap 1, opp_overlap 4262770, overlap 4262776 4262781 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4493 4262868 - 4262889 + T 74 -10.1 -3.14878 | overlap 4262867 4262871 GGTTTGTCAGCAGTC TGAGGTGCC TCTC GGCACCTCC TGTTGGATTAACGAC TERM 4494 4262871 - 4262886 + T 75 -10.4 -2.77791 | overlap 4262868 4262867 TTGTCAGCAGTCTGA GGTGCC TCTC GGCACC TCCTGTTGGATTAAC YPK_3866 4264954 - 4262897 - | berberine/berberine domain-containing protein TERM 4495 4265951 - 4265961 + r 75 -3.2 -5.1471 | overlap 4265897 TAAAATAGCAAGCCA TCTC TTT GGGA TTTATTTTTTCTCGT YPK_3867 4267282 - 4265963 - | hypothetical protein TERM 4496 4266132 - 4266115 - G 73 -8.3 -3.79138 | opp_overlap 4266127, overlap 4266106 4266104 AATACACGCAGCAAA CCCCCTG CTGC CCGGGGG TGAACCCCAGTAAAT TERM 4497 4267103 - 4267123 + g 73 -8.3 -3.88291 | opp_overlap 4267103 TGGGCAATGCGTAAA CGTAATCAG CCC CGGATTACG TTTATCCAGCTCGTC YPK_3868 4268726 - 4268544 - | hypothetical protein YPK_3869 4269480 - 4268737 - | putative fimbrial chaperone YPK_3870 4271930 - 4269552 - | fimbrial biogenesis outer membrane usher protein TERM 4498 4271596 - 4271584 - G 72 -10.5 -3.02013 | opp_overlap 4271583 AGTTTAACAACCATA CCCGG CCA CCGGG CTTCCATATTCTCAC YPK_3871 4272819 - 4272181 - | hypothetical protein TERM 4499 4273509 - 4273493 - R 100 -10.1 -6.11644 | opp_overlap 4273492 4273493 TGAGCGAAAAAAAAA CCTGCCG ATG CAGCAGG GTTTAATTGAAACGG YPK_3872 4274107 - 4273532 - | stress protein TERM 4500 4274160 - 4274136 - R 100 -12.3 -3.61268 | opp_overlap 4274127 4274138 CACTGAAGTGTTAAA TATTCAGAGCA TTT TGCCCTGAATA TATGAATACGTTAAT YPK_3873 4274869 - 4274291 - | stress protein YPK_3874 4275970 - 4274933 - | integral membrane protein TerC YPK_3875 4276447 - 4275992 - | tellurite resistance TerB TERM 4501 4276197 - 4276207 + g 71 -6.8 -4.1552 | GCATCAAATTCATAG CTGG TAA CCAG TTTGTTAAAGAACTC TERM 4502 4276268 - 4276283 + g 81 -3.3 -5.42605 | TTCAGGCGACTGCTT GATGA ACATGA TCATC TTTTGTTTTTCTTCC YPK_3876 4277664 - 4276480 - | stress protein TERM 4503 4276541 - 4276555 + g 74 -10 -3.45634 | TCCATTTCTTTGTGC CCGCTA AAA TAGCGG TTAATTCGTTCAACT TERM 4504 4277507 - 4277489 - G 71 -7.4 -4.03234 | CCCTGCCCAGACAAA CGGATGGT GCT ATCATCCG TAACCGGTTGACCAT TERM 4505 4277648 - 4277636 - G 73 -10.5 -3.12327 | overlap 4277634 GTCTGAGACGCAACA GGGGC ATT GCCCC CAGGCATCAGATTCA YPK_3877 4278257 - 4277664 - | stress protein TERM 4506 4278735 - 4278720 - g 72 -6.1 -4.3467 | opp_overlap 4278712 4278720 ATCTTGACACCAAAA TGGCG TTTATC CGCCA TATCGTGAAAGCATT YPK_3878 4278533 - 4279594 + | hypothetical protein TERM 4507 4280011 - 4279995 - g 74 -4.3 -4.94058 | CGAATTCAAAGAAAA CCATAGC CAT GCAACGG ATCACCTGCTCTATT YPK_3879 4279606 - 4280742 + | hypothetical protein TERM 4508 4281260 - 4281271 + G 71 -4.4 -4.66938 | CTGGAATCCCTCTTT TCCA CTGA TGGA TTTTATATTCACCGT YPK_3880 4280735 - 4281547 + | hypothetical protein TERM 4509 4281832 - 4281851 + G 78 -12.2 -2.57944 | overlap 4281831 TCGTGCTCGCCAGCT TGGTACGC GCGG GCGTACCA CTTGGTGTGATGCTC YPK_3881 4281540 - 4282619 + | hypothetical protein YPK_3882 4282619 - 4283578 + | hypothetical protein YPK_3883 4283975 - 4284463 + | hypothetical protein TERM 4510 4285348 - 4285361 + G 73 -2.3 -5.09521 | opp_overlap 4285349, overlap 4285349 TTTACGCCATCCATA ATGCC ACTT GGCAA TTTTTCATTTATTGA YPK_3884 4284778 - 4285578 + | methylenetetrahydrofolate reductase TERM 4511 4285690 - 4285709 + F 70 -3.5 -4.78981 | opp_overlap 4285672, overlap 4285674 4285691 CCTCACTCTGATGGG TGGGGCT ATATCA ACCCCCA TTTCTTTTGCTTGAT YPK_3885 4285919 - 4287232 + | coproporphyrinogen dehydrogenase TERM 4512 4287601 - 4287591 - g 73 -5.4 -4.52047 | overlap 4287593 TATCAGAGCACAAAA TTGC CAG GCAA TCGCCCTGCTGGAAC YPK_3886 4287229 - 4287792 + | hypothetical protein YPK_3887 4287826 - 4288476 + | NmrA family protein TERM 4513 4288598 - 4288635 + G 76 -8.3 -4.12532 | opp_overlap 4288597 4288604 GTGCCAATGTTAAAT GACGAACCTGCCACCGA ATAT TCGGTGGCACGTAAGCC TTTGTCTATCGCCAG TERM 4514 4288629 - 4288604 - g 91 -13.3 -3.33037 | opp_overlap 4288598, overlap 4288597 ATGTTAAATGACGAA CCTGCCACCGA ATAT TCGGTGGCACG TAAGCCTTTGTCTAT YPK_3888 4288562 - 4288753 + | hemin uptake protein TERM 4515 4290839 - 4290795 - g 74 -11 -2.79291 | gap 1, overlap 4290801 AAAGGCCAGGAAGCA TTCAAAGGCATGACCACAACA ATGT TATTG-GGTAATGCCTTCGAA AAAGAGTATTACGCG YPK_3889 4288884 - 4290914 + | TonB-dependent heme/hemoglobin receptor family protein TERM 4516 4290947 - 4290975 + F 82 -10.3 -3.60419 | opp_overlap 4290943 GTCTGAAATCATTCA TCCGGTAATCCAT TTT GTGGCTTGCCGGA TTATCATTTGACAAT YPK_3890 4291033 - 4292070 + | hemin-degrading family protein TERM 4517 4292238 - 4292271 + G 84 -13.2 -2.68823 | opp_overlap 4292238 4292240, overlap 4292241 4292243 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGCACGC TERM 4518 4292271 - 4292238 - g 76 -11 -3.11192 | opp_overlap 4292238 4292241 4292243, overlap 4292240 GACAGCACCAGTCAA CAGCCTCAGGCAGC GCAAAA GCTGCCTGATGTTG GTTATATGCGCACGC TERM 4519 4292241 - 4292268 + G 79 -11.3 -3.49618 | opp_overlap 4292240 4292238, overlap 4292238 4292243 AGCACCAGTCAACAG CCTCAGGCAGC GCAAAA GCTGCCTGATG TTGGTTATATGCGCA TERM 4520 4292243 - 4292266 + G 85 -12.5 -3.32023 | opp_overlap 4292240 4292238, overlap 4292241 4292238 CACCAGTCAACAGCC TCAGGCAGC GCAAAA GCTGCCTGA TGTTGGTTATATGCG YPK_3891 4292067 - 4292906 + | periplasmic binding protein YPK_3892 4292903 - 4293907 + | transport system permease protein TERM 4521 4294308 - 4294320 + G 83 -9.1 -4.4009 | CTGGCACTGGCACAG CGCGA CTA TCGCG TTTTATCCGGTGGCG YPK_3893 4293900 - 4294700 + | ABC transporter related TERM 4522 4294740 - 4294728 - T 77 -4.7 -5.0538 | CGCTATGCTAAAAAA CAGCC TAT GGCGG TTCCAAAGCACCAAC YPK_3894 4296022 - 4294841 - | cystathionine beta-lyase YPK_3895 4297354 - 4296068 - | putative transmembrane transport protein TERM 4523 4297730 - 4297759 + G 79 -10.1 -3.63839 | gap 1, opp_overlap 4297700 4297730 4297729 4297727 4297726 ATTAAAAAGAACCAC TCG-CAGCATCGTT TTA ACCGATGCTGGCGA TTACTTGTTTCATCA YPK_3896 4297524 - 4298507 + | LysR family transcriptional regulator YPK_3897 4298854 - 4298585 - | SirA family protein YPK_3898 4300065 - 4298851 - | protein of unknown function DUF395 YeeE/YedE TERM 4524 4299495 - 4299528 + g 73 -2.3 -5.05228 | overlap 4299496 GGCGTGCCGCTCTGG CTGGGTGCTGCGTCA GTGG TGAGGCGGCAGTCAC TTTTTGTAGTTTAAT TERM 4525 4300159 - 4300137 - R 72 -7.8 -3.77489 | opp_overlap 4300140, overlap 4300138 4300140 AAGGTAACAGGGAAA GTAGGCTTAT ATA ATAAGCCTAT TGAGGTTATTGACAA TERM 4526 4300158 - 4300138 - R 81 -11.3 -2.8577 | opp_overlap 4300140, overlap 4300137 4300140 AGGTAACAGGGAAAG TAGGCTTAT ATA ATAAGCCTA TTGAGGTTATTGACA TERM 4527 4300140 - 4300156 + r 72 -9.5 -3.12749 | opp_overlap 4300140 4300138 4300137 GTAACAGGGAAAGTA GGCTTAT ATA ATAAGCC TATTGAGGTTATTGA TERM 4528 4300156 - 4300140 - R 71 -9.5 -2.974 | opp_overlap 4300140, overlap 4300138 4300137 GTAACAGGGAAAGTA GGCTTAT ATA ATAAGCC TATTGAGGTTATTGA TERM 4529 4300237 - 4300263 + r 72 -10.1 -2.88849 | gap 1, opp_overlap 4300226, overlap 4300232 4300238 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4530 4300238 - 4300264 + r 84 -10.1 -3.82218 | gap 1, opp_overlap 4300226, overlap 4300232 4300237 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4531 4300327 - 4300343 + r 76 -9.5 -3.40878 | overlap 4300325 TTGTCAGCAGTCTGA GGCTTAT ATA ATAAGCC TATTATTCACATAAT YPK_3899 4301515 - 4300448 - | YscU/HrpY family type III secretion protein YPK_3900 4302299 - 4301505 - | type III secretion protein SpaR/YscT/HrcT TERM 4532 4301638 - 4301627 - G 88 -7.2 -5.1244 | opp_overlap 4301627 TCAGTAAGAGAAAAA GCGC CAGT GCGC TTTTAATGGGCATCG TERM 4533 4301627 - 4301638 + g 73 -7.2 -4.26076 | opp_overlap 4301627 TCAGTAAGAGAAAAA GCGC CAGT GCGC TTTTAATGGGCATCG YPK_3901 4302594 - 4302301 - | HrpO family type III secretion protein YPK_3902 4303301 - 4302591 - | Yop virulence translocation R YPK_3903 4304330 - 4303368 - | type III secretion system apparatus protein YscQ/HrcQ YPK_3904 4304706 - 4304308 - | hypothetical protein TERM 4534 4304374 - 4304386 + g 90 -9.1 -4.54449 | TAACTGATGCAGTTG CCGCT GCC AGCGG TTTTGTATGCGCTGT YPK_3905 4305088 - 4304687 - | type III secretion system apparatus protein YPK_3906 4306422 - 4305085 - | FliI/YscN family ATPase YPK_3907 4308457 - 4306409 - | HrcV family type III secretion protein TERM 4535 4307524 - 4307505 - G 81 -3.4 -5.42514 | overlap 4307506 4307507 CGATAAAGTAAAAAA GCCGGAGC CGCA ACCGCGGC CGCCAAAGTGATAAA YPK_3908 4309097 - 4308450 - | HrpE/YscL family type III secretion apparatus protein YPK_3909 4309687 - 4309094 - | hypothetical protein YPK_3910 4310613 - 4309882 - | YscJ/HrcJ family type III secretion apparatus lipoprotein YPK_3911 4310861 - 4310610 - | YscI/HrpB family type III secretion apparatus protein YPK_3912 4311207 - 4310959 - | type III secretion system protein SsaH family YPK_3913 4311419 - 4311204 - | type III secretion system needle protein YPK_3914 4312136 - 4311429 - | AraC family transcriptional regulator TERM 4536 4311651 - 4311633 - G 72 -6 -4.386 | overlap 4311635 GAATTTCTCATAAAA CAGGAAAT TCA ATTTCCGG GTCGAAATACCCAAT YPK_3915 4312464 - 4312243 - | type III secretion system protein YseE family YPK_3916 4313697 - 4312483 - | YscD/HrpQ family type III secretion apparatus protein YPK_3917 4315216 - 4313699 - | YscC/HrcC family type III secretion outer membrane protein YPK_3918 4315443 - 4318262 + | multi-sensor hybrid histidine kinase YPK_3919 4318275 - 4318907 + | two component LuxR family transcriptional regulator TERM 4537 4319004 - 4318976 - T 100 -16.1 -5.38054 | GGCGACAAATAAAAA CTCCCCGTCAG TCTGACG CTGACGGGGAG TGGGTAGAGACTATT YPK_3920 4320401 - 4319085 - | sodium:dicarboxylate symporter TERM 4538 4320992 - 4320976 - H 76 -6.7 -4.43909 | opp_overlap 4320976, overlap 4320973 ATGGTAATAAAACAA CATTTAT TTA ATAAATG TAAATTACTTTAGTC TERM 4539 4322264 - 4322288 + G 74 -9.4 -3.72324 | gap 1, opp_overlap 4322263 GGCGTGCCTAACTAC CCTGGCGTCAA TCGC TTGA-GCCAGG TTGTTGATAAACATA YPK_3921 4321256 - 4323214 + | acetate--CoA ligase TERM 4540 4323240 - 4323216 - f 76 -9.4 -3.5525 | gap 1, opp_overlap 4323216 4323217, overlap 4323217 AGACACCGTCGTAAA TTGTGCCGCCT ATAT AGGCGGCA-AA CTTAATTGATGCCTC TERM 4541 4323217 - 4323240 + F 76 -11 -2.64199 | opp_overlap 4323216 4323217, overlap 4323216 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC TERM 4542 4323240 - 4323217 - f 76 -11 -2.72829 | opp_overlap 4323217 4323216, overlap 4323216 GACACCGTCGTAAAT TGTGCCGCCT ATAT AGGCGGCAAA CTTAATTGATGCCTC YPK_3922 4323271 - 4323582 + | hypothetical protein YPK_3923 4323579 - 4325234 + | cation/acetate symporter ActP TERM 4543 4325267 - 4325254 - T 85 -9.5 -4.1721 | opp_overlap 4325254 ATTTACAGGTTAAAA GGCCC TTAG GGGCC TAGATTGCTGACAAA YPK_3924 4326465 - 4325308 - | hypothetical protein TERM 4544 4326839 - 4326820 - R 79 -7.8 -4.31859 | overlap 4326817 4326814 CGAACAAAATAATAA GGAGAGGA TGAT CCCTCCCC AATATCCGTACCAGG YPK_3925 4327615 - 4326860 - | integrase catalytic region YPK_3926 4327959 - 4327693 - | transposase IS3/IS911 family protein TERM 4545 4328276 - 4328256 - R 100 -10.4 -4.84527 | opp_overlap 4328256 CGTACACAGCAAAAA CCCCACGC TTTTG GCATGGGG TTATCAGCACAACGC TERM 4546 4328256 - 4328276 + r 71 -8.9 -3.28712 | opp_overlap 4328256 CGTACACAGCAAAAA CCCCACGCT TTT GGCATGGGG TTATCAGCACAACGC TERM 4547 4328336 - 4328324 - R 90 -4.1 -5.60864 | overlap 4328325 CACACAGCAAAAAAA CCCAA GCT TTGGA CATGGGGTCATCATT TERM 4548 4328408 - 4328390 - R 100 -8.1 -5.24989 | opp_overlap 4328390 4328382 TCACACAGCAAAAAA CCCACGC TTTGG GCATGGG GTCTTGGCTTTATTT TERM 4549 4328652 - 4328642 - R 74 -6.8 -4.27316 | opp_overlap 4328642 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4550 4329764 - 4329775 + r 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4551 4329811 - 4329837 + r 70 -9.4 -2.75844 | opp_overlap 4329787 4329789, overlap 4329810 4329813 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4552 4330271 - 4330289 + r 82 -10.3 -3.57798 | overlap 4330264 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG YPK_3929 4334638 - 4334105 - | protoporphyrinogen oxidase YPK_3930 4336111 - 4334660 - | TrkH family potassium uptake protein TERM 4553 4335580 - 4335591 + g 81 -5.8 -4.95302 | opp_overlap 4335580 TAGCCGTTTCAGCAA TGCG GGGC CGCA TTTTATTATCTTTCA TERM 4554 4335871 - 4335852 - G 93 -5 -5.55769 | TCTGAGAATAAAAAA GGTAATGC CCCG ACACTACC CAACACCGTCCAAAA YPK_3931 4336762 - 4336151 - | hypothetical protein TERM 4555 4336618 - 4336599 - G 100 -11.4 -4.64676 | opp_overlap 4336597 4336593 GGACCGGCAACAAAA GCCCAGCA ATGA TGCCGGGC CGTTGGATGTTGTTG YPK_3932 4338093 - 4336762 - | peptidase M24 TERM 4556 4338006 - 4337973 - G 74 -2.6 -5.1356 | overlap 4337974 4337975 GGTCATCAAGAAAAA GCCGCTG-TAATTCAC CAGA GTGAATCAGCAACG-C ATCTAATTGATGACG TERM 4557 4338139 - 4338165 + H 79 -8 -4.31835 | opp_overlap 4338140, overlap 4338140 TTTTTATCTTATCAT AGTCACCGAAAC CAT GTTTCGATGACG TTTATTCTACAAATT TERM 4558 4338140 - 4338164 + H 84 -11.5 -3.18378 | opp_overlap 4338140, overlap 4338139 TTTTATCTTATCATA GTCACCGAAAC CAT GTTTCGATGAC GTTTATTCTACAAAT TERM 4559 4338164 - 4338140 - H 93 -13.7 -2.79796 | opp_overlap 4338139 4338140 TTTTATCTTATCATA GTCACCGAAAC CAT GTTTCGATGAC GTTTATTCTACAAAT TERM 4560 4338682 - 4338699 + G 77 -8.5 -4.1899 | opp_overlap 4338671 4338670, overlap 4338674 AACTGCACCAGTGGC TGGTGTT CGCC AACACCA TTTTCAATCGACTGG TERM 4561 4339883 - 4339870 - g 73 -8.1 -4.05033 | opp_overlap 4339869 4339866 CTTACGCTACACAAA TGGGG AAAA CCCCA ATTGTTGTCAATGAT TERM 4562 4340568 - 4340580 + G 71 -9.1 -3.50335 | AGTTATTATCCTGTG GCAGC AGC GCTGC TTGATGTTTCTACCA YPK_3933 4338420 - 4340609 + | fatty oxidation complex, alpha subunit FadB TERM 4563 4340664 - 4340682 + G 78 -8 -4.33274 | TGCGTACACCGATGG GCCGCTCC AAA GGGGGGGC TTTTCGTCATGTACG YPK_3934 4340621 - 4341784 + | acetyl-CoA C-acyltransferase FadA TERM 4564 4341912 - 4341930 + T 73 -8.8 -3.56814 | overlap 4341915 TTTAGTTGCTATTTC CCCGCC GGTCAGA GGCGGG CTTTTTATCGCTTTT TERM 4565 4341915 - 4341931 + T 82 -5.7 -4.97402 | overlap 4341912 AGTTGCTATTTCCCC GCCGGTC AGA GGCGGGC TTTTTATCGCTTTTA YPK_3935 4342645 - 4341944 - | oxidoreductase FAD/NAD(P)-binding subunit YPK_3936 4344220 - 4342700 - | UbiD family decarboxylase YPK_3937 4344444 - 4344929 + | transcriptional acivator RfaH TERM 4566 4345020 - 4344982 - T 73 -8.9 -3.56273 | opp_overlap 4344986 4344994, overlap 4344983 4344986 CTCATCATTATAGAA TTCATTCAGATAGGCGC AGTTA GTGCCTATCTGAATGCT GTGACTCTTAGTTAT TERM 4567 4345019 - 4344983 - T 88 -12.4 -2.73443 | opp_overlap 4344986 4344994, overlap 4344982 4344986 TCATCATTATAGAAT TCATTCAGATAGGCGC AGTTA GTGCCTATCTGAATGC TGTGACTCTTAGTTA TERM 4568 4345016 - 4344986 - T 88 -12.7 -2.64051 | opp_overlap 4344986 4344994, overlap 4344983 4344982 TCATTATAGAATTCA TTCAGATAGGCGC AGTTA GTGCCTATCTGAA TGCTGTGACTCTTAG TERM 4569 4344986 - 4345016 + T 100 -14.9 -2.66787 | opp_overlap 4344983 4344982 4344986, overlap 4344994 TCATTATAGAATTCA TTCAGATAGGCGC AGTTA GTGCCTATCTGAA TGCTGTGACTCTTAG YPK_3938 4346064 - 4345042 - | porphobilinogen synthase TERM 4570 4346104 - 4346084 - R 86 -10.3 -3.75153 | opp_overlap 4346083 4346082 4346084 TTCTCCTAACTCAAA CCAGCCGGA AAA CCCGGCGGG CGTTTTCATCAGTTT YPK_3939 4346861 - 4346079 - | TatD-related deoxyribonuclease TERM 4571 4346896 - 4346881 - R 100 -11.8 -4.45168 | GTTCCAAAACAGAAA CCGCCC AGAA GGGCGG CTAAATATCAACGCA YPK_3940 4347693 - 4346917 - | Sec-independent protein translocase, TatC subunit TERM 4572 4347620 - 4347606 - G 83 -6.4 -4.98436 | opp_overlap 4347606 4347607, overlap 4347607 CCAATACCAGAAAAA CCACCA AAA TGGTGA TTATACAATTCAGTA YPK_3941 4348358 - 4347696 - | twin-arginine translocation protein, TatB subunit YPK_3942 4348628 - 4348362 - | twin arginine-targeting protein translocase YPK_3943 4350439 - 4348808 - | 2-polyprenylphenol 6-hydroxylase YPK_3944 4351089 - 4350439 - | sterol-binding domain-containing protein YPK_3945 4351858 - 4351103 - | ubiquinone/menaquinone biosynthesis methyltransferase TERM 4573 4351941 - 4351917 - R 72 -7.7 -3.75015 | AGAACTCCGATGAAA GCCCCACACCC CCT GGTTGCGGTGC CAATTAAATTACTCT YPK_3946 4353455 - 4351950 - | hypothetical protein YPK_3947 4354193 - 4353663 - | hypothetical protein TERM 4574 4353853 - 4353840 - G 73 -2.3 -5.07107 | overlap 4353830 GAAACGGCCAAAAAA GGCCC CAAA GAACC CCCAACGCTCGAAGA TERM 4575 4354436 - 4354409 - R 100 -13.6 -5.5074 | opp_overlap 4354413 TAACTTAACAAAAAA TAAACGGCTAGA AGAT TCCAGCCGTTTA AACAAATTAGCACAA YPK_3948 4356276 - 4354465 - | carbon starvation protein CstA TERM 4576 4354737 - 4354721 - G 81 -12.3 -3.0682 | GTCAGCATATACACA CGCTTGG TCG CCAAGCG CAGGATAATCGTGGC TERM 4577 4355453 - 4355440 - G 75 -8.1 -4.15222 | ACCGCCGTGAATAAA CTGCG TAAC CGCAG GGAATTGAATTTCAG TERM 4578 4356224 - 4356205 - G 93 -6.4 -5.5112 | overlap 4356207 CTTACGAACAAAAAA GATACCGT ATAA ACGGTAGC AGATCGTAAGGATAC TERM 4579 4356222 - 4356207 - G 78 -7.6 -4.39002 | overlap 4356205 TACGAACAAAAAAGA TACCGT ATAA ACGGTA GCAGATCGTAAGGAT YPK_3949 4357485 - 4356640 - | protein tyrosine/serine phosphatase TERM 4580 4357572 - 4357553 - R 100 -11.4 -4.36862 | AGATGAAATAAAGAA CGGGCCAG TAAA CTGACCCG AGAACAAACCCTCTA YPK_3950 4358367 - 4357606 - | uridine phosphorylase TERM 4581 4359178 - 4359190 + G 75 -7.7 -4.29738 | opp_overlap 4359177 CTGGTAAAAAAAGTC CCTGA TCG TCAGG TTTTGGTGGATCTCG TERM 4582 4359412 - 4359427 + G 71 -10.4 -2.88544 | GCTATCGATCTCTGC GCCCCA GTGT TGGGGC TATATGGAGGTAAAG YPK_3951 4358794 - 4359666 + | carboxymethylenebutenolidase TERM 4583 4359686 - 4359671 - T 100 -11.8 -5.52096 | AAACGCAATAAAAAA GGGCGC GAAA GCGCCC CAAAAGCCCCACTAC YPK_3952 4362012 - 4359721 - | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YPK_3954 4363843 - 4362944 - | carboxylate/amino acid/amine transporter YPK_3953 4362103 - 4363056 + | LysR family transcriptional regulator TERM 4584 4363730 - 4363718 - GT 73 -3.3 -4.89729 | overlap 4363723 CAGAAAAGGCAAAAA GACCA GTG CGGCC AGCCCGACACGCATC YPK_3955 4365252 - 4364050 - | hypothetical protein TERM 4585 4364482 - 4364465 - G 80 -7.1 -4.57474 | TTAAGTGAGACAAAA TTTTCCA AACT TGGAAAA GAGGGTAATTCCGCA TERM 4586 4365097 - 4365078 - G 80 -9.3 -4.2803 | CAGGGCAATTTAAAA CCTTGCC GAGACT GGCAAGG CCCTCTGCATCAGGA YPK_3956 4365933 - 4365265 - | hypothetical protein TERM 4587 4365311 - 4365326 + g 80 -4.8 -5.14563 | opp_overlap 4365311 AGTGTAGGCAAGACA TTATCA GGAA TGATAA TTTTTTGCTCACCAG TERM 4588 4365723 - 4365743 + g 74 -11.3 -2.95306 | AACTCAAGGCCGCCT CTTTGAATG CCG CATTCAAAG TATAATGTCTTATTT YPK_3957 4367026 - 4366070 - | auxin efflux carrier TERM 4589 4367051 - 4367085 + r 85 -5.7 -5.18726 | CCTGTCAGGCCGGGC CAGGTCAGCCCGT AAATGTAAG AATGGCTGACCTG TTTTTATTATGGCGG YPK_3958 4367876 - 4367127 - | glycerophosphodiester phosphodiesterase YPK_3959 4368946 - 4367873 - | ABC transporter related TERM 4590 4367954 - 4367964 + g 71 -6.8 -4.25056 | opp_overlap 4367949, overlap 4367951 ATGCAATGTACTGCC TGCC ACT GGCA TTTCTTCATGGGATA TERM 4591 4368290 - 4368316 + g 75 -7.9 -4.2461 | opp_overlap 4368283 TTTATAAACCTCGCT GGGGGTACCGA TTTGC TCGGCAACCCC TTTGTTCATCACAAT YPK_3960 4369798 - 4368953 - | binding-protein-dependent transport systems inner membrane component TERM 4592 4369021 - 4369006 - G 71 -6.8 -4.25256 | GCTGCATCAAAAGAA CCACCA CGAC CGGTGG AATTAAAGTCAAAAT TERM 4593 4369570 - 4369560 - G 75 -5.4 -4.81863 | AAAGCCATAACAAAA CTGT TCA ACAG CATCAACCCGAAAGG YPK_3961 4370682 - 4369795 - | binding-protein-dependent transport systems inner membrane component YPK_3962 4372317 - 4370998 - | extracellular solute-binding protein TERM 4594 4371571 - 4371582 + g 100 -5.8 -5.5353 | opp_overlap 4371571 4371569 TTTACGGCCAAAATA GGTG AAAT CACC TTTTTTATTCATATC TERM 4595 4372699 - 4372686 - H 70 -5.3 -4.55689 | ATCATTCAGACAAAA TGGTA TAAT TACCA CTTGAAATAACGTTA YPK_3963 4372875 - 4373363 + | hypothetical protein TERM 4596 4373429 - 4373401 - f 71 -9 -3.4052 | gap 1, opp_overlap 4373401 4373403 4373405 TGTTAATTTAATGAA TACAGCCATGGAA TTAT CTCC-TGGCTGTA TATATCCGTCATACT TERM 4597 4374742 - 4374708 - g 100 -10.6 -5.47399 | overlap 4374710 CCAAGGGTAAAAAAA CGCCCCGCTTAGTCCA GTT TGGACGCAGCAGGGTG ATAGAAAGCGTACAA TERM 4598 4374740 - 4374710 - g 76 -11.8 -2.91328 | overlap 4374708 AAGGGTAAAAAAACG CCCCGCTTAGTCCA GTT TGGACGCAGCAGGG TGATAGAAAGCGTAC YPK_3964 4373630 - 4375945 + | hypothetical protein TERM 4599 4376102 - 4376116 + GF 71 -7 -4.07868 | opp_overlap 4376100 4376102 TGCAGGTGTATAACA GCGGCG ATA CACCGC TTTATCTGGATATCA TERM 4600 4376116 - 4376102 - gf 72 -9.2 -3.22475 | opp_overlap 4376102, overlap 4376100 TGCAGGTGTATAACA GCGGCG ATA CACCGC TTTATCTGGATATCA YPK_3965 4375963 - 4376649 + | hypothetical protein YPK_3966 4376621 - 4377268 + | hypothetical protein TERM 4601 4377791 - 4377777 - g 78 -9.2 -4.13728 | CAGATATCCGCAAAA GCCCCC GCT GGGGAC AATACTGCGGGGAAA YPK_3967 4377330 - 4377848 + | hypothetical protein YPK_3968 4377954 - 4379060 + | hypothetical protein YPK_3969 4379636 - 4379175 - | hypothetical protein YPK_3970 4380565 - 4379864 - | ABC transporter related YPK_3971 4381377 - 4380610 - | ABC transporter related YPK_3972 4382660 - 4381374 - | inner-membrane translocator TERM 4602 4381704 - 4381725 + g 71 -8.7 -3.71672 | ACCTGCAAAGGCCGC GCTGATGGT AAAT GCCGTCAGC TTAATTTTGGTCGGG TERM 4603 4382390 - 4382447 + g 79 -3.3 -5.18357 | gap 1, opp_overlap 4382376 CCACGGCTGCCAAGA GTTTTTGCCGCGGTGT-GGTGCCATCAA AAC TTGGCAGCACCCACGCCGGGCCTGAGAC TTTTTTAATCCCTTG YPK_3973 4383583 - 4382657 - | inner-membrane translocator TERM 4604 4383674 - 4383654 - R 100 -10.4 -4.70659 | CTGTAGAGGGAAAAA TCCCCCCG GAATA CGAGGGGA TGCAGTTGATAGAAG YPK_3974 4384879 - 4383764 - | extracellular ligand-binding receptor TERM 4605 4383874 - 4383885 + g 73 -7.2 -4.17023 | overlap 4383865 4383864 CCATCACGGTCTCAA CCGG TTTG CCGG TTTTCAGATCGTTAG TERM 4606 4384512 - 4384531 + g 85 -12.2 -3.39717 | GCGTTTGTAGCAGCA GGGGTGAT CATT ATCACCCC TTCATCTTCATAAAT TERM 4607 4385399 - 4385421 + G 73 -4.8 -4.73388 | opp_overlap 4385382 TGCTGCCTGGCAACA GTGGATTACT GAG GGTAGACCAC TTTTTGCTGCACGTT YPK_3975 4385301 - 4385693 + | GCN5-related N-acetyltransferase TERM 4608 4385857 - 4385837 - T 100 -11.2 -4.77757 | opp_overlap 4385837 TGCCAAAAAGCAAAA GGGCGATA ATCAA TATCGCCC TTCTTTATCGTGCCG TERM 4609 4385837 - 4385857 + T 93 -11.2 -4.11183 | opp_overlap 4385837 TGCCAAAAAGCAAAA GGGCGATA ATCAA TATCGCCC TTCTTTATCGTGCCG YPK_3976 4386757 - 4385900 - | RNA polymerase, sigma 32 subunit, RpoH TERM 4610 4386319 - 4386333 + g 73 -7.8 -4.09739 | opp_overlap 4386315, overlap 4386315 CCTGATTAAACCAGC CCAGGC GCT GCTTGG TTTTACGCAGGTTGA TERM 4611 4386860 - 4386881 + r 70 -8.1 -3.61268 | ACTTATCATTTTGCT GCAATATTC GACT GAGTATTGC TTTAAAAGTTCAATC YPK_3977 4388021 - 4387068 - | protein insertion ABC transporter, inner membrane subunit FtsX YPK_3978 4388679 - 4388011 - | type II secretory pathway family protein YPK_3979 4390256 - 4388685 - | signal recognition particle-docking protein FtsY TERM 4612 4388940 - 4388960 + g 77 -3.1 -5.26875 | opp_overlap 4388936, overlap 4388941 TGTCAGCATAACCTC ATGGGGGGC GTC GCCGTCCAG TTTTTTCATTACCCG TERM 4613 4390175 - 4390193 + g 88 -12.4 -3.70773 | overlap 4390171 CTTCTTTTTCAGTCG CCAGCGGC TCT GCTGCTGG TTCTTCACTCTGACG TERM 4614 4390225 - 4390247 + g 71 -6.4 -4.24002 | CCAAGACCCAGCCAG GAAAAAAATC CAC GTTTTTTTTC TTTTGCCATTTGCGA YPK_3980 4390538 - 4391200 + | methyltransferase TERM 4615 4391220 - 4391231 + G 76 -2.2 -5.32882 | overlap 4391216 4391214 GGCCGGTTACTGATG CTAG GCGT CTGG TTTTTTATACTGCTG YPK_3981 4391190 - 4391462 + | hypothetical protein YPK_3982 4392068 - 4391649 - | hypothetical protein TERM 4616 4391975 - 4391987 + g 79 -3.3 -5.252 | GTGCGCGATCATTTT CTGCA TCC TGCTG TTTTTTCTGCCAATA YPK_3983 4392600 - 4392280 - | hypothetical protein YPK_3984 4392890 - 4393516 + | YhhN family protein YPK_3985 4393930 - 4396278 + | heavy metal translocating P-type ATPase YPK_3986 4396597 - 4396343 - | SirA family protein YPK_3987 4396881 - 4397549 + | hypothetical protein YPK_3988 4397679 - 4398206 + | putative lipoprotein TERM 4617 4398217 - 4398241 + T 100 -13.6 -4.72631 | opp_overlap 4398207 4398221 AATAATCTGTCCCAG CAGAGCGCGG CTCAC TCGCGCTCTG TTTTATTGACTTACT YPK_3989 4399597 - 4398350 - | glycerol-3-phosphate dehydrogenase, anaerobic, C subunit YPK_3990 4400916 - 4399642 - | glycerol-3-phosphate dehydrogenase, anaerobic, B subunit YPK_3991 4402561 - 4400906 - | glycerol-3-phosphate dehydrogenase, anaerobic, A subunit YPK_3992 4403186 - 4404301 + | glycerophosphoryl diester phosphodiesterase TERM 4618 4404389 - 4404408 + T 81 -4.4 -5.41143 | gap 1 ATTATTCAACGTGAC TCACTA-CA TTC TGATAGTGA TTTTTTTCACCCATG YPK_3993 4405574 - 4404375 - | hypothetical protein TERM 4619 4405799 - 4405781 - R 95 -12.4 -3.28041 | AACGCCAAGGAGGAA GGGTGACC AAA GGCCACCC TACTCCACAGCATCA YPK_3994 4406646 - 4405837 - | Cof-like hydrolase YPK_3995 4407676 - 4406681 - | lysophospholipase TERM 4620 4406730 - 4406717 - G 73 -5.2 -4.56775 | overlap 4406725 ATGTTGCGCGAAAAA GCGC AATATG GCGC TAAGCGCCTCGGCAC YPK_3996 4407890 - 4408510 + | lysine exporter protein LysE/YggA TERM 4621 4408565 - 4408514 - T 84 -10.9 -3.66216 | gap 1, opp_overlap 4408533, overlap 4408512 4408515 CGCAAAGTATAAAGA GCCTGTCAGGCTAGCCAACCGGGT TAAAT ACCCCGTTGGCTAACCCGTTAG-C GGGACAATATCAGTT TERM 4622 4408565 - 4408515 - T 77 -11.1 -2.79007 | opp_overlap 4408533, overlap 4408512 4408514 GCAAAGTATAAAGAG CCTGTCAGGCTAGCCAACCGGGT TAAAT ACCCCGTTGGCTAACCCGTTAGC GGGACAATATCAGTT YPK_3997 4409181 - 4408561 - | homoserine/threonine efflux pump YPK_3998 4411081 - 4409288 - | ATP-dependent DNA helicase RecQ TERM 4623 4411173 - 4411141 - R 95 -14.2 -2.86164 | gap 1, opp_overlap 4411147 4411149 TCCCCAACTATTAGA TCTG-CACAGGCCGG CTAA CCGGCCTGTGTCTGA AACTGTGATAACGCC TERM 4624 4411147 - 4411166 + r 100 -15 -2.89191 | opp_overlap 4411141, overlap 4411149 ACTATTAGATCTGCA CAGGCCGG CTAA CCGGCCTG TGTCTGAAACTGTGA TERM 4625 4411149 - 4411164 + r 86 -11.8 -2.99649 | opp_overlap 4411141, overlap 4411147 TATTAGATCTGCACA GGCCGG CTAA CCGGCC TGTGTCTGAAACTGT YPK_3999 4412075 - 4411197 - | phospholipase A(2) YPK_4000 4412297 - 4412767 + | thioesterase superfamily protein TERM 4626 4413080 - 4413094 + G 83 -9.2 -4.41494 | overlap 4413081 AGCGCCTATTGTTAC TGGCGG TGA CCGCCG TTTTGATTGCCAGTA TERM 4627 4413081 - 4413093 + G 73 -10.5 -3.24414 | overlap 4413080 GCGCCTATTGTTACT GGCGG TGA CCGCC GTTTTGATTGCCAGT YPK_4001 4412854 - 4413744 + | transporter DMT superfamily protein TERM 4628 4413803 - 4413759 - T 100 -8.8 -5.42862 | gap 2, opp_overlap 4413759 AGATGCCGAAAAAAA GCCCGGTTACTCAATATTGG GGTTAGT CCAAT-T-GAGTGACCGGGC TTTTTTATTCGTTGC TERM 4629 4413759 - 4413803 + T 100 -11.7 -5.5604 | gap 2, opp_overlap 4413759 AGATGCCGAAAAAAA GCCCGGTTACTCAATATTGGG GTTAG TCCAAT-T-GAGTGACCGGGC TTTTTTATTCGTTGC YPK_4002 4414792 - 4413842 - | magnesium and cobalt transport protein CorA TERM 4630 4414616 - 4414602 - G 81 -3.5 -5.42259 | gap 1, overlap 4414604 TCATCTTCAAAAAAA CG-GGC CGAA GCCTCG ATATCGTCCAACTCT YPK_4003 4414974 - 4415093 + | hypothetical protein TERM 4631 4415357 - 4415336 - T 100 -7.3 -5.85178 | opp_overlap 4415336 AAGACCCAAAAAAAA CCGAAGTCA GTAA CAACTTCGG TTTTGCGTACCCTGC YPK_4004 4416271 - 4415441 - | hypothetical protein YPK_4005 4417529 - 4416297 - | hypothetical protein TERM 4632 4417290 - 4417279 - G 72 -5.8 -4.4767 | CGACTCACCATAAAA CGCT CGAA AGCG ATAGCCATAGCATTA YPK_4006 4417957 - 4418643 + | TetR family transcriptional regulator TERM 4633 4418744 - 4418718 - T 76 -9.4 -3.40971 | overlap 4418716 AAATAAAAATAGATA GGTGGCCGCACT GAC ACTGCAACCACC ACAAATATCAGATTA YPK_4007 4420919 - 4418757 - | DNA helicase II TERM 4634 4420453 - 4420463 + g 71 -8.2 -3.66995 | CTCTCAATATGTTGT GGGC GCA GCCC TTCGTCTTTTTTGCC TERM 4635 4420868 - 4420848 - G 88 -12.5 -3.75024 | opp_overlap 4420850 4420852 4420855 GGCCAGTACCAACAA GTTGCCGCG CGG CGCGGCCAC GGCGTCACGTTGTTT TERM 4636 4420852 - 4420880 + g 74 -4.3 -4.86621 | opp_overlap 4420848, overlap 4420850 4420855 AGTACCAACAAGTTG CCGCGCGGCGCGG CCA CGGCGTCACGTTG TTTTTCATTCAGGCT TERM 4637 4420855 - 4420877 + g 77 -6.8 -4.53777 | opp_overlap 4420848, overlap 4420850 4420852 ACCAACAAGTTGCCG CGCGGCGCGG CCA CGGCGTCACG TTGTTTTTCATTCAG TERM 4638 4420958 - 4420969 + r 72 -7.2 -3.9122 | opp_overlap 4420957 AAAATAGCCACAATG CCGG GTCT CCGG TTGTTTGCCCCCCTC YPK_4008 4421735 - 4421019 - | HAD family hydrolase TERM 4639 4421651 - 4421626 - G 77 -4 -5.0133 | gap 1, overlap 4421627 4421628 4421630 TACTGTTGTAAAAAA GCCACAGACTG CTGTT CAGTCCGCG-C GATCACTGGCCGATT YPK_4009 4422646 - 4421735 - | tyrosine recombinase XerC YPK_4010 4423347 - 4422643 - | hypothetical protein YPK_4011 4424236 - 4423412 - | diaminopimelate epimerase TERM 4640 4423811 - 4423783 - G 75 -11.7 -2.64616 | overlap 4423792 TGCCCATCGACACCA CGCCACACAGCAC CGT ATGCTCTGCGGCG CGTAAAATATAGGTT YPK_4012 4424619 - 4424419 - | putative lipoprotein YPK_4013 4424753 - 4425073 + | iron donor protein CyaY TERM 4641 4425113 - 4425093 - f 73 -2.5 -5.14965 | overlap 4425094 AGTTGGATCAAAAAA GGACACG ATTTTTA CGTGTCA GACTGCTGACAAACC TERM 4642 4425199 - 4425173 - f 84 -10.1 -3.82218 | gap 1, opp_overlap 4425182, overlap 4425174 4425189 AGGCAGAGGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4643 4425200 - 4425174 - f 72 -10.1 -2.88849 | gap 1, opp_overlap 4425182, overlap 4425173 4425189 GGCAGAGGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT YPK_4014 4425212 - 4425346 + | hypothetical protein YPK_4015 4427869 - 4425317 - | putative adenylate cyclase TERM 4644 4428235 - 4428261 + H 78 -2.3 -5.54264 | overlap 4428233 4428240 GTCATGCATCCATTA CAATCGTTGTA TTCAT TGCAACAGTTG TTTTTTTAGGTATTT YPK_4016 4428363 - 4429304 + | porphobilinogen deaminase TERM 4645 4429817 - 4429835 + G 78 -11 -3.43203 | AGCGAACAAAGTGCT CACTGGCA ACG TGCCGGTG TTGATATTCTGGTGG YPK_4017 4429301 - 4430050 + | uroporphyrinogen-III synthase TERM 4646 4430823 - 4430833 + G 71 -6.8 -4.19024 | opp_overlap 4430823 AGAATCTGAGCAAAA GCTG GCA CAGC TTTATGTCTGATTTC TERM 4647 4430833 - 4430823 - g 71 -6.8 -4.28762 | opp_overlap 4430823 AGAATCTGAGCAAAA GCTG GCA CAGC TTTATGTCTGATTTC YPK_4018 4430081 - 4431205 + | protein of unknown function DUF513 hemX YPK_4019 4431208 - 4432428 + | HemY protein TERM 4648 4432541 - 4432520 - T 100 -10.2 -6.11644 | opp_overlap 4432522 GCACCCAAAAAAAAA CACTTGCC GAAAAG GGCAAGTG TCTAAAATTTTCAGG TERM 4649 4433240 - 4433254 + T 100 -12.8 -4.33248 | opp_overlap 4433240 TCAGGCGAAAAAAAA CCCCGC ATT GCGGGG TTTCTTCTGAAATTG TERM 4650 4433254 - 4433240 - T 100 -12.8 -5.78622 | opp_overlap 4433240 TCAGGCGAAAAAAAA CCCCGC ATT GCGGGG TTTCTTCTGAAATTG TERM 4651 4433386 - 4433413 + T 73 -7.2 -4.08706 | CTCTCGACCTATGTC CATGTAAATATT AATA AATATCTACATG TTTGTGTGGTGCGAA YPK_4021 4435298 - 4433907 - | amino acid permease-associated region TERM 4652 4434727 - 4434715 - G 90 -10.5 -4.41348 | CCCCCGGCAAAGAAA CCGCC ATG GGCGG TCAGATTATCGAAGC YPK_4022 4436567 - 4435827 - | WecB/TagA/CpsF family glycosyl transferase TERM 4653 4435874 - 4435860 - G 76 -7.2 -4.4078 | overlap 4435865 ATAATAACCAACAAA CTTAAG CAG CTTAAG CTGACGACGAATGCG YPK_4023 4437940 - 4436576 - | WzyE family protein YPK_4024 4439022 - 4437937 - | 4-alpha-L-fucosyltransferase TERM 4654 4438806 - 4438781 - G 80 -7.5 -4.64861 | gap 1, overlap 4438777 CCGTGCCAAAAGAAA CGCGCAC-TGCG ATC CGCCTGTGCACG GGCAATAACCGCCTC YPK_4025 4440301 - 4439045 - | polysaccharide biosynthesis protein TERM 4655 4440267 - 4440238 - G 88 -13.7 -3.20227 | overlap 4440236 GTTTAACCACCAATA GCCCTACGCCAAT CTTG ATTAGCGTAGAGC AGGCAGTCCAAATCG YPK_4026 4441433 - 4440303 - | TDP-4-keto-6-deoxy-D-glucose transaminase YPK_4027 4442172 - 4441435 - | TDP-D-fucosamine acetyltransferase YPK_4028 4443082 - 4442150 - | glucose-1-phosphate thymidylyltransferase TERM 4656 4442650 - 4442668 + g 82 -10.2 -3.93061 | opp_overlap 4442640 4442641 4442638 AAACAGTCGCGCCCT GCTGACGC GCG GCGACAGC TTTCAGTTTTGGACT YPK_4029 4444393 - 4443326 - | dTDP-glucose 4,6-dehydratase YPK_4030 4445652 - 4444390 - | nucleotide sugar dehydrogenase TERM 4657 4445605 - 4445591 - G 76 -7 -4.42238 | overlap 4445592 TTACGCGAAGCAAAA GCCGCC GCG GTCGGC AGACCAATATACCCA YPK_4031 4446779 - 4445649 - | UDP-N-acetylglucosamine 2-epimerase YPK_4032 4448204 - 4447128 - | lipopolysaccharide biosynthesis protein YPK_4033 4449307 - 4448225 - | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 4658 4449687 - 4449705 + r 100 -11.7 -4.23892 | opp_overlap 4449687 TCCAAAAGTAAAAAA CGCCACG ACTGG CGTGGCG TTTTGACTGATTCAA TERM 4659 4449705 - 4449687 - R 100 -11.7 -5.46698 | opp_overlap 4449687 TCCAAAAGTAAAAAA CGCCACG ACTGG CGTGGCG TTTTGACTGATTCAA YPK_4034 4451116 - 4449857 - | transcription termination factor Rho TERM 4660 4450528 - 4450510 - G 74 -6.8 -4.35461 | overlap 4450512 GCAATACCATCAAAA CACAATCA GGG TGATTGTA AGCAATGCTGGTCGC TERM 4661 4450813 - 4450791 - G 71 -6.9 -4.28369 | AACAATGCAAAATAA CGCTCGCCT TCTTT AGGCGGACG AATCTTACCGGCAAC YPK_4035 4451922 - 4451596 - | thioredoxin TERM 4662 4452730 - 4452720 - g 76 -2.4 -5.25803 | AACCGTTACAAAAAA CCGG TCA CCGC ATCAAAGAAGAGCTG TERM 4663 4452789 - 4452771 - g 85 -3 -5.59655 | opp_overlap 4452773, overlap 4452772 4452773 CAAATGAAGAAAAAA TGCGTCTG TTA CAGACGTT AATTGAAGAAGAATG TERM 4664 4452773 - 4452787 + G 73 -10 -3.33696 | opp_overlap 4452772 4452771 4452773 AATGAAGAAAAAATG CGTCTG TTA CAGACG TTAATTGAAGAAGAA YPK_4036 4452041 - 4453327 + | DEAD/DEAH box helicase domain-containing protein YPK_4037 4453331 - 4454827 + | Ppx/GppA phosphatase TERM 4665 4454915 - 4454938 + T 84 -11.1 -3.69702 | overlap 4454918 GCCTTAATGCATGGC TAACGGGCA ATAGAC TGCCCGTTA TTATCTTCACTACTG TERM 4666 4454918 - 4454935 + T 77 -8.4 -3.97511 | overlap 4454915 TTAATGCATGGCTAA CGGGCA ATAGAC TGCCCG TTATTATCTTCACTA YPK_4038 4457016 - 4454995 - | ATP-dependent DNA helicase Rep TERM 4667 4455034 - 4455051 + g 100 -11.3 -4.66609 | opp_overlap 4455033 4455032 CTGAGCACGAAGATT GGCCAGA TGAC TCTGGCC TTTTTGCATACGCTC TERM 4668 4455150 - 4455134 - G 78 -7.9 -4.47328 | AACTCCATCAGAAAA CGGCTAG GTT CTGGCCG AATCAACTCGCCGTA TERM 4669 4456128 - 4456113 - G 77 -2.6 -5.26316 | opp_overlap 4456106 TCAGTTCAGAAAAAA GTTTCT TTTC AAAAAC ATGTGGGTTGTTGGC YPK_4039 4457033 - 4457200 + | hypothetical protein YPK_4040 4457205 - 4457501 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 4670 4457543 - 4457502 - f 71 -9.6 -3.06796 | gap 1, opp_overlap 4457503 4457505 4457510, overlap 4457510 TTGTACCGCAGCTAA TCCTGAAATACGCCACGCT ATAAA AG-GTGGCGTATTTCATGT TTATACTCGTCATAC TERM 4671 4457503 - 4457542 + F 100 -13.1 -4.00038 | gap 1, opp_overlap 4457502 4457510, overlap 4457505 4457510 TGTACCGCAGCTAAT CCTGAAATACGCCACGCT ATAAA AG-GTGGCGTATTTCATG TTTATACTCGTCATA TERM 4672 4457505 - 4457540 + F 100 -14.3 -3.58864 | gap 1, opp_overlap 4457502 4457510, overlap 4457503 4457510 TACCGCAGCTAATCC TGAAATACGCCACGCT ATAAA AG-GTGGCGTATTTCA TGTTTATACTCGTCA TERM 4673 4457510 - 4457535 + F 77 -8.4 -4.05181 | gap 1, opp_overlap 4457502 4457510, overlap 4457505 4457503 CAGCTAATCCTGAAA TACGCCACGCT ATAAA AG-GTGGCGTA TTTCATGTTTATACT TERM 4674 4457535 - 4457510 - f 73 -8.4 -3.61268 | gap 1, opp_overlap 4457510 4457505 4457503, overlap 4457502 CAGCTAATCCTGAAA TACGCCACGCT ATAAA AG-GTGGCGTA TTTCATGTTTATACT YPK_4041 4457740 - 4458531 + | glutamine cyclotransferase TERM 4675 4459201 - 4459166 - f 100 -6.4 -6.06529 | gap 1, opp_overlap 4459176, overlap 4459168 TACACAGAAAAAAAA CATCAAAACACCTTTGA AAT TAAAAGGTATTTTGA-G ACGAATAATAAAAAC TERM 4676 4459200 - 4459168 - f 100 -10.1 -4.65669 | opp_overlap 4459176, overlap 4459166 CACAGAAAAAAAACA TCAAAACACCTTTGA AAT TAAAAGGTATTTTGA GACGAATAATAAAAA TERM 4677 4459242 - 4459296 + F 82 -10.2 -3.71794 | opp_overlap 4459251, overlap 4459251 GGAATATATATTCAC TCAATCAAATTCCCCATTCGGATTTT ATT AAAATCCGAATGGGGAATTAACTCCA TTTCAATGATTACAT TERM 4678 4459251 - 4459287 + F 100 -24.1 -3.11732 | opp_overlap 4459251, overlap 4459242 ATTCACTCAATCAAA TTCCCCATTCGGATTTT ATT AAAATCCGAATGGGGAA TTAACTCCATTTCAA TERM 4679 4459287 - 4459251 - f 100 -24.1 -3.93556 | opp_overlap 4459251 4459242 ATTCACTCAATCAAA TTCCCCATTCGGATTTT ATT AAAATCCGAATGGGGAA TTAACTCCATTTCAA YPK_4042 4459323 - 4459853 + | fimbrial protein TERM 4680 4459865 - 4459893 + F 86 -12.5 -2.52676 | opp_overlap 4459862 4459858 GTAATAAATGTATTT ATTACCGGGTGGT ATA ACCACTCGGTAAA TGACTTCAGAAGGTA YPK_4043 4459917 - 4460648 + | pili assembly chaperone TERM 4681 4461694 - 4461706 + G 71 -6.3 -4.15044 | opp_overlap 4461673, overlap 4461673 TCGCTCCTGGCCCGT TCGTT ATT AACGA TTTGTTCAGCACCAG YPK_4044 4460676 - 4463327 + | fimbrial biogenesis outer membrane usher protein TERM 4682 4464111 - 4464092 - gf 83 -10.7 -3.54129 | TATATCGCGTTTAAA GGGCCAG GAATTA CTGGCCC GATTGAGGGTACTGA TERM 4683 4464684 - 4464666 - gf 72 -5.9 -4.33004 | AGTTAAGCAAAATAA GCGGGCA AACAG TGACCGC CGGAGCAGTGAATGC YPK_4045 4463363 - 4464730 + | hypothetical protein TERM 4684 4465047 - 4465076 + GT 80 -11.5 -2.6062 | gap 1, opp_overlap 4465050, overlap 4465046 4465043 4465050 CCGGTATTCCGGTTA CAACCTCAGGC-AC AGC GTAGCCTGCGGTTG ATCTTATCTGGTGGG YPK_4046 4464696 - 4465514 + | pili assembly chaperone TERM 4685 4465733 - 4465712 - T 72 -9.5 -3.14564 | GCACCTGGGGATTAA TGAGCCTCA CCCC TGAGACTCA CCCTGCGGGCAGCAT TERM 4686 4466129 - 4466116 - T 78 -5.9 -4.81163 | opp_overlap 4466111 4466116, overlap 4466111 TAAATATTAACAAAA CCACC AGAA GGCGG TTTGGATTATATATT YPK_4047 4466406 - 4466149 - | colicin immunity protein/pyocin immunity protein YPK_4048 4466659 - 4466408 - | HNH endonuclease TERM 4687 4466890 - 4466862 - R 82 -3.2 -5.47964 | gap 1 ATAAAATAAGAAAAA CGCCCAA-CAATA CACT CATTGACTGGACG TTAACTGAAGCATAT YPK_4049 4467175 - 4466912 - | hypothetical protein TERM 4688 4466997 - 4467007 + g 74 -6.8 -4.43909 | CCCTTCTCATCCTCA GCCA ACT TGGC TTCTTTTATTAGCCT YPK_4050 4469013 - 4467175 - | S-type pyocin domain-containing protein TERM 4689 4469078 - 4469090 + r 75 -9.1 -3.58533 | TACCTAATATTCTTA CCCCA CCC TGGGG TTTCGGCAATTCTAC TERM 4690 4469161 - 4469140 - R 100 -9.4 -5.36441 | GGTGCACATAAAAAA GCCCCCCT TTTTAC AGGGAGGC TCAATATAAAATCAC YPK_4051 4470671 - 4469193 - | ketol-acid reductoisomerase TERM 4691 4470905 - 4470880 - H 72 -9.9 -2.87529 | gap 1, opp_overlap 4470878, overlap 4470879 TGATATATTAACAAT GTGATATTGCAG TTT CTGCAATA-CAC CCGATTTCTTATGCA TERM 4692 4471065 - 4471097 + G 81 -7.6 -4.58395 | CTTTCCCGCCAGATC CAGCGGCTGGAAGA GACTA TCGGCCAGCCCCTG TTTTTACGCGATAAC TERM 4693 4471794 - 4471808 + G 82 -11.4 -3.41982 | opp_overlap 4471794, overlap 4471781 TGTGTACCGAAAAAA CGGCTC CAA GAGCCG TTGATTGATGCATTT TERM 4694 4471808 - 4471794 - g 100 -11.4 -5.08824 | opp_overlap 4471794 4471781 TGTGTACCGAAAAAA CGGCTC CAA GAGCCG TTGATTGATGCATTT YPK_4052 4470957 - 4471838 + | LysR family transcriptional regulator YPK_4053 4472102 - 4471893 - | hypothetical protein TERM 4695 4472426 - 4472460 + H 70 -7.9 -3.64831 | opp_overlap 4472447, overlap 4472424 4472427 ATTTAGGCAGTGTTA ACCGGATAAGCGTGT CAATA ATAAGCTTATCCGGC TTATGTCATTATTAG TERM 4696 4472427 - 4472459 + H 81 -11.4 -2.78176 | opp_overlap 4472447, overlap 4472426 4472424 TTTAGGCAGTGTTAA CCGGATAAGCGTGT CAATA ATAAGCTTATCCGG CTTATGTCATTATTA TERM 4697 4472896 - 4472883 - g 75 -5.3 -4.74453 | CAACACAGTTAAAAA CAGAT TTTA ATCTG CATAATATTTCAAGC YPK_4054 4472750 - 4473628 + | hypothetical protein YPK_4055 4473612 - 4474073 + | hypothetical protein YPK_4056 4475748 - 4474204 - | threonine dehydratase, biosynthetic TERM 4698 4475725 - 4475704 - G 71 -10.1 -2.87344 | TATCGCCCGCAGATA TTCTGCCCC GCAA GGGGCAGCA GATAAGGGTTGCGAA YPK_4057 4477604 - 4475754 - | dihydroxy-acid dehydratase YPK_4058 4477809 - 4477612 - | hypothetical protein YPK_4059 4478859 - 4477933 - | branched-chain amino acid aminotransferase TERM 4699 4478446 - 4478460 + g 73 -10 -3.28924 | opp_overlap 4478446 4478445 CACCATAGCATCAAT GCCTTG CTC CAAGGC TTCTGCACCCAGATA YPK_4060 4479139 - 4478882 - | acetolactate synthase isozyme II small subunit YPK_4061 4480782 - 4479136 - | acetolactate synthase, large subunit, biosynthetic type TERM 4700 4480897 - 4480874 - H 100 -13.8 -5.4505 | opp_overlap 4480874 CGTGCCAATAAAAAA CCCCCGGACC TTTC GGTGCGGGGG TTCTCTTGAGATTAA TERM 4701 4480874 - 4480897 + H 100 -13.8 -3.69069 | opp_overlap 4480874 CGTGCCAATAAAAAA CCCCCGGACC TTTC GGTGCGGGGG TTCTCTTGAGATTAA YPK_4062 4481405 - 4482928 + | Mg chelatase, subunit ChlI TERM 4702 4482948 - 4482933 - T 100 -11.8 -4.20516 | GCCTGATGTAACAAA GGGGGC CAAA GCCCCC TAATACTCAACTAAC YPK_4063 4483523 - 4483185 - | hypothetical protein TERM 4703 4483339 - 4483353 + g 74 -10 -3.45087 | opp_overlap 4483337 4483339, overlap 4483337 TCGCCACGGCAAACA GCAACG AAC CGTTGC TCTTCTTCCGTTACT TERM 4704 4483353 - 4483339 - G 73 -10 -3.38046 | opp_overlap 4483339 4483337, overlap 4483337 TCGCCACGGCAAACA GCAACG AAC CGTTGC TCTTCTTCCGTTACT YPK_4064 4483642 - 4484523 + | LysR family transcriptional regulator YPK_4065 4485502 - 4484510 - | monosaccharide-transporting ATPase YPK_4066 4486500 - 4485502 - | monosaccharide-transporting ATPase YPK_4067 4488023 - 4486533 - | ABC transporter related TERM 4705 4488104 - 4488080 - R 87 -8.4 -4.4195 | overlap 4488083 ATACAGGTGATAAAA GCAGGCGGGG GCAAG CCCCGCCATC TGAATCAATAACCAA TERM 4706 4488101 - 4488083 - R 95 -13.1 -3.18044 | overlap 4488080 CAGGTGATAAAAGCA GGCGGGG GCAAG CCCCGCC ATCTGAATCAATAAC YPK_4068 4489065 - 4488109 - | periplasmic binding protein/LacI transcriptional regulator TERM 4707 4489935 - 4489919 - R 73 -3.8 -5.02201 | AAAATATTATAAAAA TCATTA AATTA TAATGA GGAAAGAGAAAGCGA TERM 4708 4490032 - 4490013 - R 100 -11.4 -5.80951 | opp_overlap 4490013 ACTTAAAATAAAAAA CCCCTCGC TTTC GCGAAGGG TTTTTTATCTGGCAG TERM 4709 4490013 - 4490032 + r 100 -9.2 -5.36441 | opp_overlap 4490013 ACTTAAAATAAAAAA CCCCTCGC TTTC GCGAAGGG TTTTTTATCTGGCAG TERM 4710 4490549 - 4490539 - R 74 -6.8 -4.27316 | opp_overlap 4490539 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4711 4491661 - 4491672 + r 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4712 4491708 - 4491734 + r 70 -9.4 -2.75844 | opp_overlap 4491684 4491686, overlap 4491707 4491710 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4713 4492168 - 4492186 + r 82 -10.3 -3.57798 | overlap 4492161 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4714 4493624 - 4493661 + r 78 -5.7 -4.7629 | opp_overlap 4493618 4493624 4493627, overlap 4493627 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 4715 4493627 - 4493658 + r 78 -7.4 -4.47888 | opp_overlap 4493627 4493624 4493618, overlap 4493624 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA YPK_4072 4496786 - 4495923 - | glutamate racemase TERM 4716 4496170 - 4496158 - GR 72 -7.7 -3.76775 | opp_overlap 4496157 4496154 GTTAATAGAGGGAAA TGGGT GCA ACCCA ATACTATAGTATCCG TERM 4717 4496634 - 4496660 + gr 100 -18.2 -3.14132 | opp_overlap 4496631 4496627 AGCATATATATAGTG GAGATTCGGCAA CAG TTGCCGAATCTC TTGATAGACAGACAG YPK_4073 4498623 - 4496731 - | TonB-dependent vitamin B12 receptor TERM 4718 4497962 - 4497974 + gH 73 -9.1 -3.46068 | overlap 4497960 TCACGATCTGGCTGA CTGGC CAT GCCAG TATTTCCCTTGGCAA YPK_4074 4499085 - 4500188 + | tRNA (uracil-5-)-methyltransferase TERM 4719 4500190 - 4500180 - T 76 -6.8 -4.57569 | GTACTGCTGGAAAAA CGTC ACT GACG AATAATTCATACCGC TERM 4720 4500218 - 4500236 + T 81 -11 -3.33696 | opp_overlap 4500218 4500227 CGCAGATAAAAGAAA GGGCAACG ACA TGTTGCCC TTAGTTGGCAAGACG TERM 4721 4500236 - 4500218 - T 100 -10.3 -4.83243 | opp_overlap 4500218, overlap 4500227 CGCAGATAAAAGAAA GGGCAAC GACAT GTTGCCC TTAGTTGGCAAGACG YPK_4075 4500729 - 4500322 - | hypothetical protein YPK_4076 4501377 - 4500742 - | TetR family transcriptional regulator YPK_4077 4501505 - 4501410 - | hypothetical protein YPK_4078 4501595 - 4502995 + | pyridine nucleotide-disulphide oxidoreductase dimerisation region YPK_4079 4503895 - 4502978 - | LysR family transcriptional regulator TERM 4722 4504477 - 4504460 - g 80 -4.2 -5.24129 | overlap 4504476 GCGTGGTAGAAAAAA TGTTTG TCGAGC CAAACA AACCGGGCGACCCGT TERM 4723 4504481 - 4504491 + G 71 -8.2 -3.65693 | opp_overlap 4504481 4504480 4504476 TCGAGCCAAACAAAC CGGG CGA CCCG TTTGAAGTATCTGAT YPK_4080 4504042 - 4504773 + | glutaredoxin family protein TERM 4724 4504827 - 4504844 + F 100 -11.3 -5.80817 | opp_overlap 4504825 AATAGGAAGTAACTT GGTAGGC TCCG GCCTACC TTTTTTTCTGTTAGG TERM 4725 4505392 - 4505410 + G 80 -7.4 -4.56597 | TTTAATTGGGACGAT CTGCCAGA ATC TGTGGCAG TTTTTGGCCCAGGCG YPK_4081 4504867 - 4506330 + | pyridine nucleotide-disulphide oxidoreductase dimerisation region TERM 4726 4506365 - 4506349 - T 89 -11.5 -3.53811 | opp_overlap 4506349 CTCAGGCGGTTCAAA CCGGGCA CGG CGCCCGG TTTTTAATCCCCCGT TERM 4727 4506349 - 4506365 + T 100 -10.8 -4.7254 | opp_overlap 4506349 CTCAGGCGGTTCAAA CCGGGC ACGGC GCCCGG TTTTTAATCCCCCGT YPK_4082 4507249 - 4506446 - | TonB family protein YPK_4083 4508642 - 4507314 - | HlyD family type I secretion membrane fusion protein YPK_4084 4510526 - 4508718 - | type I secretion system ATPase TERM 4728 4510661 - 4510685 + r 100 -13.7 -5.06414 | opp_overlap 4510656 4510659 GTGGTATCAATGACT CAGCCAGAAAG TTA TTTTCTGGCTG TTTTTCTTAAGCGGC YPK_4085 4511309 - 4510692 - | Heme-binding A family protein TERM 4729 4511436 - 4511469 + r 100 -18.3 -4.26351 | overlap 4511437 TAGCTGTGTTCTCTC ACCCGCATCATTGAC TGCC GTCAATGATGCGGGA TTTATTCACTTGCTG TERM 4730 4511437 - 4511468 + r 100 -21.8 -3.15087 | overlap 4511436 AGCTGTGTTCTCTCA CCCGCATCATTGAC TGCC GTCAATGATGCGGG ATTTATTCACTTGCT YPK_4086 4513882 - 4511531 - | TonB-dependent heme/hemoglobin receptor family protein TERM 4731 4512229 - 4512219 - G 71 -6.8 -4.25256 | CGGGTATCAAAATAA GCGA CCT TCGC GGCAAAGTGATCGTC TERM 4732 4514563 - 4514596 + r 76 -10.1 -3.33261 | opp_overlap 4514567 TAGTAACTGTTAATG CAAAGCGGGCCGCTG CAAT TAGCGGCCCGCCCCG TTCTCAAGATTAAAA TERM 4733 4514592 - 4514567 - R 100 -17.6 -3.75897 | opp_overlap 4514563 AACTGTTAATGCAAA GCGGGCCGCT GCAATT AGCGGCCCGC CCCGTTCTCAAGATT YPK_4087 4515994 - 4514621 - | argininosuccinate lyase TERM 4734 4514667 - 4514683 + g 71 -9.3 -3.5594 | opp_overlap 4514629 4514662 4514678, overlap 4514668 GCCGATGCAACCTGC TGCGGCG AAA CGCCGCC TTTGGCCACTCGCTT TERM 4735 4514668 - 4514682 + g 81 -12.8 -2.73243 | opp_overlap 4514629 4514662 4514678, overlap 4514667 CCGATGCAACCTGCT GCGGCG AAA CGCCGC CTTTGGCCACTCGCT TERM 4736 4515126 - 4515140 + g 89 -5.7 -5.24796 | overlap 4515119 4515117 TTACCACGGATGAGC TCCAG CGCAT CTGGA TTTTTCTTCTGTGGC YPK_4088 4516937 - 4516161 - | acetylglutamate kinase YPK_4089 4518121 - 4517117 - | N-acetyl-gamma-glutamyl-phosphate reductase YPK_4090 4518372 - 4519535 + | acetylornithine deacetylase (ArgE) YPK_4091 4519909 - 4522545 + | phosphoenolpyruvate carboxylase TERM 4737 4522742 - 4522717 - f 100 -16.2 -2.52543 | AGTCGCCTCAACCGA GCAGGAGGGC TAGCCG GCCCTCCTGC ACCTGCGGCTTGCGC TERM 4738 4522809 - 4522837 + F 93 -11 -4.08216 | gap 1 CGGGCTGACGAGCCA GCGCGAT-GGGCA TCCC TGCCCAAGCGCGC TTTTCGCGGGCGTCC TERM 4739 4522952 - 4522919 - f 87 -5.5 -5.47399 | opp_overlap 4522919 TCAACGTCAAAAAAA CAATTCAAAACCC TCTTCTTT AGATTTTGAATTG GTCTTTGACCTTAAA TERM 4740 4523213 - 4523248 + G 78 -11.1 -3.39895 | overlap 4523208 4523214 GTGCGAAAGCGCGGG GTTCCAAGGGGGCCA CGCTTA TGGCCCCCTTGGCGG TTGGTTCATCGGAGG TERM 4741 4523214 - 4523247 + G 90 -14.6 -2.63723 | overlap 4523208 4523213 TGCGAAAGCGCGGGG TTCCAAGGGGGCCA CGCTTA TGGCCCCCTTGGCG GTTGGTTCATCGGAG YPK_4092 4523104 - 4523271 + | hypothetical protein YPK_4093 4524323 - 4523439 - | 5,10-methylenetetrahydrofolate reductase YPK_4094 4526991 - 4524556 - | aspartate kinase TERM 4742 4525456 - 4525438 - G 85 -10.3 -4.08767 | TTCATCGTTGTAAAA TGCCAGC GTCCG GCTGGCA TCCAAACCATCGTAA YPK_4095 4528235 - 4526994 - | O-succinylhomoserine (thiol)-lyase YPK_4096 4528532 - 4528849 + | methionine repressor, MetJ YPK_4097 4529198 - 4529653 + | YiaAB two helix domain-containing protein TERM 4743 4529674 - 4529709 + T 74 -4.8 -4.74801 | overlap 4529676 4529680 4529692 4529693 TCGCTACAATTAACC TTTTCACTGCAGTTAA CCTT TTCACTGCAGTTAATA TTTTTACTGCAGTTA TERM 4744 4529676 - 4529707 + T 72 -7.4 -3.98658 | overlap 4529674 4529680 4529692 4529693 GCTACAATTAACCTT TTCACTGCAGTTAA CCTT TTCACTGCAGTTAA TATTTTTACTGCAGT TERM 4745 4529680 - 4529703 + T 73 -8.2 -3.62531 | overlap 4529676 4529674 4529692 4529693 CAATTAACCTTTTCA CTGCAGTTAA CCTT TTCACTGCAG TTAATATTTTTACTG TERM 4746 4529790 - 4529762 - T 79 -3.1 -5.31275 | opp_overlap 4529762 TTTCACTACAAAAAA TGGTTCAGCATAA CAA TTGTGCTTAGCCA TTTTTTCTTTACGCA TERM 4747 4529762 - 4529790 + T 100 -7.5 -5.63517 | opp_overlap 4529762 TTTCACTACAAAAAA TGGTTCAGCATAA CAA TTGTGCTTAGCCA TTTTTTCTTTACGCA TERM 4748 4530156 - 4530142 - T 100 -12.8 -5.45652 | opp_overlap 4530142 AGTGGCAACAAAAAA GGCGCC CAA GGCGCC TTTTTATCTGACGGG TERM 4749 4530142 - 4530156 + T 100 -12.8 -4.96848 | opp_overlap 4530142 AGTGGCAACAAAAAA GGCGCC CAA GGCGCC TTTTTATCTGACGGG YPK_4098 4530393 - 4530178 - | ribosomal protein L31 TERM 4750 4530494 - 4530461 - H 90 -11.2 -3.94409 | opp_overlap 4530467, overlap 4530464 CACACGATTGATAAA TAACCATCGTTGAT AAAATA AGCAACGATGGTTA ACAGGATTTGATATC TERM 4751 4530491 - 4530464 - H 79 -8.5 -4.09519 | opp_overlap 4530467, overlap 4530461 ACGATTGATAAATAA CCATCGTTGAT AAAATA AGCAACGATGG TTAACAGGATTTGAT YPK_4099 4530646 - 4532844 + | primosomal protein N' TERM 4752 4532928 - 4532975 + F 78 -5.6 -4.85918 | TGATTCAGGTGAGGG GATATGGCGAACCCCTTG CAGCGTCAAGAA AAAGGGGTTCGCCCGATC TTTTATTGTCTGATC YPK_4100 4532931 - 4533074 + | hypothetical protein YPK_4101 4533197 - 4534225 + | LacI family transcription regulator YPK_4102 4534390 - 4535136 + | cell division protein FtsN YPK_4103 4535236 - 4535760 + | 20S proteasome A and B subunits YPK_4104 4535831 - 4537162 + | heat shock protein HslVU, ATPase subunit HslU TERM 4753 4537209 - 4537239 + F 100 -15.4 -4.9934 | overlap 4537211 4537212 4537214 ATCCATATGGAGTAT CCCGAGTGGGAGGC ATC GCCTCCCACTCCTG TTTTTATCGTATTAT TERM 4754 4537211 - 4537237 + F 100 -16.6 -4.10552 | overlap 4537209 4537212 4537214 CCATATGGAGTATCC CGAGTGGGAGGC ATC GCCTCCCACTCC TGTTTTTATCGTATT TERM 4755 4537212 - 4537236 + F 100 -20.1 -3.04705 | overlap 4537211 4537209 4537214 CATATGGAGTATCCC GAGTGGGAGGC ATC GCCTCCCACTC CTGTTTTTATCGTAT TERM 4756 4537214 - 4537234 + F 100 -16.9 -3.0648 | overlap 4537212 4537211 4537209 TATGGAGTATCCCGA GTGGGAGGC ATC GCCTCCCAC TCCTGTTTTTATCGT TERM 4757 4537268 - 4537290 + F 70 -2.8 -5.06451 | ATGATTCTTATCGCA TTATGATTTT GAT AACGTCATAA TTTTTTGACATGATA TERM 4758 4537439 - 4537416 - g 73 -9.6 -3.27029 | overlap 4537420 4537425 4537429 GCCTATCAATCAACA CCAACCAAAC CCAG GCTTGGCTGG AAAGCCTACGACCAC YPK_4105 4537397 - 4538314 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase YPK_4106 4538456 - 4538941 + | regulator of ribonuclease activity A YPK_4107 4539642 - 4539058 - | hypothetical protein TERM 4759 4540263 - 4540238 - R 100 -14.1 -3.33815 | opp_overlap 4540238 ATCCCTTTCAATTAA TATGCCAGCGC TTTC ACGCTGGCATA TTTACTTATTACTGC TERM 4760 4540238 - 4540263 + r 100 -13.4 -4.09805 | opp_overlap 4540238 ATCCCTTTCAATTAA TATGCCAGCG CTTTCA CGCTGGCATA TTTACTTATTACTGC YPK_4108 4540511 - 4540272 - | hypothetical protein YPK_4109 4540724 - 4542016 + | secretion protein HlyD family protein YPK_4110 4542009 - 4544123 + | ABC transporter related TERM 4761 4544333 - 4544362 + T 100 -13.7 -4.44046 | opp_overlap 4544338 ATCGGCGCACCCACA GAAAAGGGCGATA CTGA TATCGCCCTTTAC TTTATTTCCGCTGAC TERM 4762 4544357 - 4544338 - T 100 -12.2 -4.55287 | opp_overlap 4544333 CGCACCCACAGAAAA GGGCGATA CTGA TATCGCCC TTTACTTTATTTCCG YPK_4111 4544703 - 4544464 - | hypothetical protein YPK_4112 4545427 - 4546275 + | MIP family channel protein TERM 4763 4547268 - 4547258 - g 82 -5.4 -5.0538 | GGGCATGGCAAAAAA TACC TAC GGTA CGGGTTGCTTCCTGC TERM 4764 4547945 - 4547934 - g 75 -3.6 -5.01732 | AAGGGCTGGAAAAAA GCAG TGGC CCGC GCCCGGGATTGGGAA YPK_4113 4546452 - 4547975 + | glycerol kinase TERM 4765 4548088 - 4548066 - f 80 -9.1 -3.93578 | opp_overlap 4548066, overlap 4548061 TTAAACCAAACACAA CGCGCTATC CCCCC GATGGCGCG TTTTTCGTTGTGAGA TERM 4766 4548066 - 4548088 + F 100 -11.3 -4.93365 | opp_overlap 4548061 4548066 TTAAACCAAACACAA CGCGCTATC CCCCC GATGGCGCG TTTTTCGTTGTGAGA TERM 4767 4548976 - 4548962 - g 74 -9.2 -3.70446 | overlap 4548963 CGACAGTGAAGATAA CCGCCG CAT CGGCGA ACAAGAGTTATTACG TERM 4768 4548975 - 4548963 - g 71 -10.5 -2.81786 | overlap 4548962 GACAGTGAAGATAAC CGCCG CAT CGGCG AACAAGAGTTATTAC YPK_4114 4548228 - 4549238 + | fructose-1,6-bisphosphatase, class II TERM 4769 4549262 - 4549291 + F 70 -7.8 -3.68619 | GCAATCATTTTTATT CTGCACGGCGCT CGTAAA AGCGCCGTAAAG TTTACATCAGTTAGA YPK_4115 4549393 - 4550139 + | oxidoreductase FAD/NAD(P)-binding subunit YPK_4116 4550865 - 4550497 - | hypothetical protein YPK_4117 4551079 - 4551714 + | hypothetical protein TERM 4770 4551799 - 4551785 - f 80 -10 -3.70902 | opp_overlap 4551785 4551767 TGTTGGACAGGTAAA CTGCCT GTC AGGCAG TCATTATTATTGACC TERM 4771 4551785 - 4551799 + F 73 -10 -3.03309 | opp_overlap 4551785, overlap 4551767 TGTTGGACAGGTAAA CTGCCT GTC AGGCAG TCATTATTATTGACC YPK_4118 4551843 - 4552610 + | Triose-phosphate isomerase TERM 4772 4552648 - 4552669 + T 87 -6.5 -5.24129 | opp_overlap 4552642 4552648 4552650 GGTACAACACAAAAA CCGGCGT AAATAAAA GCGCCGG TTTTTTATACACCCC TERM 4773 4552669 - 4552648 - T 85 -5.8 -5.1523 | opp_overlap 4552648, overlap 4552642 4552650 GGTACAACACAAAAA CCGGCG TAAATAAAAG CGCCGG TTTTTTATACACCCC YPK_4119 4554005 - 4552827 - | LysR family transcriptional regulator YPK_4120 4554199 - 4554936 + | LmbE family protein TERM 4774 4555213 - 4555223 + G 87 -6.8 -5.15634 | CGCCGACCTCCGAAT GCCA TGA TGGC TTTTTTGGTGACCTG YPK_4121 4554933 - 4555646 + | 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase YPK_4122 4555712 - 4557139 + | anion transporter TERM 4775 4557184 - 4557220 + F 71 -8.8 -3.39908 | gap 1, opp_overlap 4557177, overlap 4557183 4557180 4557185 ATTTAAACGTCGCTT AGCCACTGAAGACAAGG TCAT CCT-GTTTTCGGTGGCC TGTCTTTTGGCGCAA TERM 4776 4557185 - 4557219 + F 88 -12.3 -2.63623 | gap 1, opp_overlap 4557177, overlap 4557184 4557183 4557180 TTTAAACGTCGCTTA GCCACTGAAGACAAGG TCAT CCT-GTTTTCGGTGGC CTGTCTTTTGGCGCA YPK_4123 4557257 - 4558033 + | extracellular solute-binding protein YPK_4124 4558205 - 4558065 - | hypothetical protein TERM 4777 4558155 - 4558118 - G 73 -8.5 -3.91897 | gap 1, opp_overlap 4558127 CGCGGTAGCGATAAA CGTTCAACACCACAACAT ACA ACGATGTGGTGTTGG-CG ATAAAGCGGTTGGTA YPK_4125 4559272 - 4558283 - | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 4778 4559468 - 4559416 - R 100 -13.1 -4.98531 | gap 3, opp_overlap 4559428 GGCTGAAAGTAAAAA GCCCTCGCAATGTGAACTG--CCCAA CTTT TTGGGATCAGTTCA-ATTTCGAGGGC TTGCCGAACGAGCGA YPK_4126 4560476 - 4559493 - | 6-phosphofructokinase YPK_4127 4561596 - 4560694 - | cation diffusion facilitator family transporter YPK_4128 4561730 - 4561852 + | transposase, IS4 family protein TERM 4779 4561873 - 4561895 + T 74 -7 -4.2535 | CAGAGAATTTCTGGT CTGTGGAATA CTG TATTCCGCCG TTTTCACTATGGTCT YPK_4129 4563117 - 4562158 - | putative transposase YhgA family protein YPK_4130 4563544 - 4563437 - | hypothetical protein TERM 4780 4563736 - 4563718 - R 100 -14.6 -5.71638 | CAATAAGCAAAAAAA GCCCTCCA TCA TGGAGGGC GAAAGACAGGGATGG YPK_4131 4564281 - 4563793 - | protein of unknown function Spy-related TERM 4781 4564137 - 4564152 + g 77 -6.8 -4.49316 | CATCAAACATGTTAT GGTGAC CGCG GTCGCC TTTCTTGTTCATCAT YPK_4132 4564455 - 4565153 + | two component transcriptional regulator TERM 4782 4566164 - 4566175 + G 76 -7.2 -4.35644 | overlap 4566149 4566148 GTCACGGCACCTCCG GGGC CATG GCCC TTATTTTGTAATCCT TERM 4783 4566387 - 4566374 - g 70 -9.5 -3.18582 | TATCGTACTGATGAA GCCCG AGAT CGGGC GTCGGGAGGAACAGG YPK_4133 4565150 - 4566526 + | integral membrane sensor signal transduction histidine kinase TERM 4784 4566538 - 4566565 + T 83 -11.4 -3.04461 | gap 1 TTAATCTGCCGTCTA TCTGCCCG-ATCA ATG TGGTTCGGGCAGA TATTGAGAATCAGTG YPK_4134 4567639 - 4566575 - | AraC family transcriptional regulator TERM 4785 4567321 - 4567311 - G 79 -2.4 -5.50723 | CGATGAAAATAAAAA GTGC TAA GCCC CAGTTGAGCTGCCAA YPK_4135 4567828 - 4568316 + | RNA methyltransferase YPK_4136 4569263 - 4568439 - | serine O-acetyltransferase YPK_4137 4570545 - 4569526 - | glycerol-3-phosphate dehydrogenase (NAD(P)(+)) TERM 4786 4569932 - 4569920 - G 75 -7.7 -4.26076 | overlap 4569921 4569924 GCATTCGCACCAAAA CCGAT GCC ATCGG ACATACCTGCACCGA TERM 4787 4569952 - 4569924 - G 71 -10.4 -2.77781 | gap 1, overlap 4569920 4569921 TCGCACCAAAACCGA TGCCATCGG-ACA TACC TGCACCGATGGCA ATCACGTTTTTCACT YPK_4138 4571021 - 4570545 - | protein-export protein SecB TERM 4788 4571134 - 4571114 - R 82 -10.4 -3.68827 | CACTGACGAGTTAAA GCAGTGGG TCTAG CCCACCGC GCGCATCCAGGGCGT YPK_4139 4571357 - 4571109 - | glutaredoxin 3 YPK_4140 4571910 - 4571476 - | rhodanese domain-containing protein TERM 4789 4572728 - 4572740 + G 74 -9.1 -3.6269 | opp_overlap 4572728 4572727, overlap 4572726 AGCTGGCGGCTAAAC GCGGT GCA ACCGC TATTTATCTGCATGC TERM 4790 4573314 - 4573289 - g 73 -5.4 -4.51097 | overlap 4573311 TGAAGCATGATAAAA CCCAGTTACG CATTTC CGAAACTGAG AAATATGCTCACGTC TERM 4791 4573690 - 4573661 - g 71 -8.6 -3.74747 | gap 1 GCAACGCTGAGCAAA TGCGTGACCCGGC AACTG GCCAGG-CACACA CCGCCCATACCAGCC YPK_4141 4572307 - 4573854 + | phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent TERM 4792 4573911 - 4573953 + G 82 -12.1 -3.11634 | opp_overlap 4573908, overlap 4573915 AACTACGAAAGATGC CGTCTCTGACGGTAGAGAG TCTCC CTCTCTGCTGTCAGATAAG TTGAGTCGTCTACCG TERM 4793 4573915 - 4573949 + G 100 -15.9 -2.55722 | opp_overlap 4573908, overlap 4573911 ACGAAAGATGCCGTC TCTGACGGTAGAGAG TCTCC CTCTCTGCTGTCAGA TAAGTTGAGTCGTCT TERM 4794 4574154 - 4574140 - g 93 -2.1 -6.13503 | CAGCAACAAAAAAAA CAACG CAGTT CATTG CTGGATCAACTAAAA TERM 4795 4574991 - 4574977 - g 76 -10 -3.76952 | opp_overlap 4574976 4574973, overlap 4574966 GGCAGCGAAGTCAAA GCCATC GCC GATGGC CGTGTTTTACTGGCT YPK_4142 4573882 - 4575234 + | peptidase M23B YPK_4143 4575258 - 4576268 + | protein of unknown function DUF610 YibQ TERM 4796 4576393 - 4576353 - T 86 -11.3 -3.3506 | opp_overlap 4576344, overlap 4576390 CGTAAATCCTGACAA GGGCTTGGTATCGCA GCGGGTAGTTT TGCAACACCAAGCCC GAAGGGGATAAACTA YPK_4144 4577431 - 4576406 - | L-threonine 3-dehydrogenase YPK_4145 4578652 - 4577441 - | 2-amino-3-ketobutyrate coenzyme A ligase YPK_4146 4578898 - 4579830 + | ADP-L-glycero-D-manno-heptose-6-epimerase YPK_4147 4579861 - 4580925 + | lipopolysaccharide heptosyltransferase II YPK_4148 4580925 - 4581890 + | lipopolysaccharide heptosyltransferase I YPK_4149 4582268 - 4583587 + | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YPK_4150 4583588 - 4584370 + | glycosyl transferase family protein YPK_4151 4584367 - 4584846 + | pantetheine-phosphate adenylyltransferase YPK_4152 4585661 - 4584852 - | formamidopyrimidine-DNA glycosylase TERM 4797 4585702 - 4585729 + r 95 -12.8 -3.16683 | opp_overlap 4585708, overlap 4585708 TGTACTTTATATAAT AAAAAACCCGGC CAAG GCCGGGTTTTTC TTAGTCCGCTAAAAT TERM 4798 4585708 - 4585723 + r 100 -11.8 -5.1356 | opp_overlap 4585708, overlap 4585702 TTATATAATAAAAAA CCCGGC CAAG GCCGGG TTTTTCTTAGTCCGC TERM 4799 4585723 - 4585708 - R 100 -11.8 -5.60689 | opp_overlap 4585708 4585702 TTATATAATAAAAAA CCCGGC CAAG GCCGGG TTTTTCTTAGTCCGC TERM 4800 4585737 - 4585758 + r 83 -8.9 -4.07877 | GGTTTTTCTTAGTCC GCTAAAATT ACTT AATTTTAGC TTCTTTATAGAGTAC YPK_4153 4585911 - 4585744 - | ribosomal protein L33 YPK_4154 4586159 - 4585923 - | ribosomal protein L28 YPK_4155 4587090 - 4586422 - | DNA repair protein RadC TERM 4801 4587456 - 4587467 + G 71 -7.2 -4.04209 | CGCTACAGGCAGTCT CGGG CTAT CCCG TTTCTGATGATTTGC YPK_4156 4587170 - 4588501 + | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YPK_4157 4588479 - 4588937 + | deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TERM 4802 4589006 - 4588979 - f 91 -12 -3.56562 | gap 1, opp_overlap 4588974 AAAGCTATCACATAA GCCGC-CTGGGCA TTG TTCCCAGAGCGGC CGGTGTTTGGGTTTT TERM 4803 4589322 - 4589305 - g 77 -4.8 -4.90906 | CTACAAGATGAAAAA GAGACG TTTAAT CGCCTC CGCTTAATCCTGCTG TERM 4804 4589525 - 4589490 - g 71 -4 -4.82901 | opp_overlap 4589506, overlap 4589506 4589507 CCTTCGTGAGAAAAA GCTGCGTGATGGACAA GGCT TTATCCATGATGAAGC GTTACTGGCCACCCA YPK_4158 4589059 - 4589655 + | TetR family transcriptional regulator TERM 4805 4589763 - 4589706 - T 100 -21.6 -3.68569 | gap 1, opp_overlap 4589717 4589759, overlap 4589708 4589709 4589729 AAGACATAGAGAGAA CAGCGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCGG-G ATTACCCCATGTTAT TERM 4806 4589762 - 4589708 - T 100 -25.3 -3.40967 | opp_overlap 4589717 4589759, overlap 4589706 4589709 4589729 GACATAGAGAGAACA GCGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCGG GATTACCCCATGTTA TERM 4807 4589761 - 4589709 - T 100 -28.8 -2.63857 | opp_overlap 4589717 4589759, overlap 4589708 4589706 4589729 ACATAGAGAGAACAG CGAATCAAGCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGCTTGATTCG GGATTACCCCATGTT TERM 4808 4589717 - 4589753 + T 100 -15.2 -3.35867 | opp_overlap 4589709 4589708 4589706 4589729 AGAACAGCGAATCAA GCTACGCAAAAAGGGC AAACG GCCCTCTTGGCGTAGC TTGATTCGGGATTAC TERM 4809 4589741 - 4589729 - T 77 -6.2 -4.68424 | opp_overlap 4589717, overlap 4589709 4589708 4589706 CAAGCTACGCAAAAA GGGC AAACG GCCC TCTTGGCGTAGCTTG YPK_4159 4590437 - 4589790 - | orotate phosphoribosyltransferase TERM 4810 4590595 - 4590579 - R 100 -9.4 -5.41143 | opp_overlap 4590576 TAGCGGGTAAAAAAA GGCGAC TATCC GTCGCC TAATAAATTTATGAT YPK_4160 4591320 - 4590604 - | ribonuclease PH YPK_4161 4591447 - 4592310 + | YicC domain-containing protein TERM 4811 4592342 - 4592368 + F 86 -8 -4.7373 | opp_overlap 4592342 TGAACATCCCAAAAA GCCAGAAAATAC CCT GTATTGACTGGC TTTTTCATGCCATAA TERM 4812 4592368 - 4592342 - f 86 -8 -4.66953 | opp_overlap 4592342 TGAACATCCCAAAAA GCCAGAAAATAC CCT GTATTGACTGGC TTTTTCATGCCATAA YPK_4162 4592498 - 4593766 + | integrase family protein TERM 4813 4593879 - 4593869 - g 80 -4 -5.20783 | ACCCAAACACAAAAA CAAA AGA TTTG CCTGATGATATTTCC YPK_4163 4593763 - 4594410 + | hypothetical protein YPK_4164 4594631 - 4594966 + | phage transcriptional regulator, AlpA TERM 4814 4594994 - 4594979 - g 88 -7.5 -5.13343 | opp_overlap 4594978, overlap 4594989 TAATGCAAAAGAAAA CCCGC ACAGAG GCGGG CATTATCGGACAGGT YPK_4165 4594966 - 4595385 + | hypothetical protein YPK_4166 4595400 - 4596410 + | hypothetical protein TERM 4815 4596609 - 4596597 - g 76 -9.1 -3.86346 | TGATTCTTGCACAAA CCTGC CGC GCAGG GAGTCGAGTAAACAA TERM 4816 4596752 - 4596730 - g 88 -8.4 -4.92385 | opp_overlap 4596730 4596749, overlap 4596748 TACAGGCAAAGAAAA GGGAGGTACT GAG AATACCGCCC TTTGGGGTTATGGTT TERM 4817 4597086 - 4597110 + G 80 -7.1 -4.62313 | overlap 4597083 CTGATAGATCTACAT CGAGGCGAAGT TGT ACTACGTTTCG TTCTTTTTGGTTTTC TERM 4818 4597238 - 4597210 - g 81 -9.6 -4.10552 | gap 1, overlap 4597205 TTTTAGTAAAGCAAA GCCCGG-CAGTGC GCTA ACACTAACCGGGC CTCTAACCACCAACG YPK_4167 4596407 - 4597459 + | hypothetical protein YPK_4168 4597452 - 4597643 + | hypothetical protein YPK_4169 4597636 - 4597830 + | hypothetical protein YPK_4170 4598331 - 4598519 + | hypothetical protein YPK_4171 4598907 - 4598536 - | hypothetical protein YPK_4172 4599036 - 4598938 - | hypothetical protein YPK_4173 4599283 - 4601274 + | putative transcriptional regulator TERM 4819 4601518 - 4601487 - f 100 -15.9 -5.5208 | opp_overlap 4601490 4601494 CCAGAACACAAAAAA CCAGCAAGCTCGC TAATCT GCGGGCTTGCTGG TTCGCAGGAAAAGCC TERM 4820 4601490 - 4601515 + F 88 -12.6 -2.70932 | opp_overlap 4601487, overlap 4601494 GAACACAAAAAACCA GCAAGCTCGC TAATCT GCGGGCTTGC TGGTTCGCAGGAAAA TERM 4821 4602047 - 4602068 + G 71 -7.3 -4.10566 | CTGGCTGCGGGTCGC CGCCAAATG GATA TGTTTGGCG TTATTATTATTGCCT YPK_4174 4601975 - 4602592 + | hypothetical protein YPK_4175 4604315 - 4602612 - | DNA ligase (NAD(+)) TERM 4822 4603062 - 4603050 - G 73 -3.3 -4.8543 | CAAGCGGGATAAAAA CTGAG GTT CACAG CCATGTGGTAAGCGT TERM 4823 4603949 - 4603972 + g 71 -7.4 -4.02206 | gap 1 AGAGATTTTTCCGCC CCGCCATCCAC CTT GTG-AGGGCGG TTTCATCTTTGAGTT TERM 4824 4604771 - 4604783 + G 80 -9.1 -4.15044 | opp_overlap 4604767 4604771 GGGCAGGGAAATCAA GCCTG ATT CAGGC TTTGTTAAAAACACA TERM 4825 4604783 - 4604771 - g 71 -9.1 -3.54408 | opp_overlap 4604771, overlap 4604767 GGGCAGGGAAATCAA GCCTG ATT CAGGC TTTGTTAAAAACACA YPK_4176 4604716 - 4605339 + | guanylate kinase YPK_4177 4605394 - 4605669 + | DNA-directed RNA polymerase, omega subunit TERM 4826 4606245 - 4606227 - g 73 -4.5 -4.68593 | opp_overlap 4606227 TTCATCATTTAAAAA CCGAGCT GGAAG AGCTGGG TTTTGAAGCACTCTA TERM 4827 4606889 - 4606911 + G 75 -7.6 -4.28977 | opp_overlap 4606889, overlap 4606890 CGCATTGTGGAATTA CCGGCTGGTG CCA CACCGGTCGA TTTTGCCTATGTTGT TERM 4828 4606890 - 4606910 + G 76 -11.1 -3.16302 | opp_overlap 4606889, overlap 4606889 GCATTGTGGAATTAC CGGCTGGTG CCA CACCGGTCG ATTTTGCCTATGTTG YPK_4178 4605689 - 4607797 + | (p)ppGpp synthetase I, SpoT/RelA TERM 4829 4608184 - 4608170 - g 77 -4.2 -5.14563 | TGGGTCAGGAAAAAA CCGGTA TTT CACCAG AAGCGCTGGCACTGG YPK_4179 4607836 - 4608495 + | tRNA guanosine-2'-O-methyltransferase YPK_4180 4608496 - 4610577 + | ATP-dependent DNA helicase RecG TERM 4830 4610760 - 4610734 - T 86 -10.1 -3.9749 | gap 1, opp_overlap 4610743, overlap 4610735 4610750 AGGCAGAAGAGTAAA GCGTCCGCGCCA AGGA TGGCGCGG-CTC GAGCCTACATGGATG TERM 4831 4610761 - 4610735 - T 73 -10.1 -2.97771 | gap 1, opp_overlap 4610743, overlap 4610734 4610750 GGCAGAAGAGTAAAG CG-TCCGCGCCA AGGA TGGCGCGGCTCG AGCCTACATGGATGT TERM 4832 4610839 - 4610854 + T 78 -9 -3.81146 | TTGTCAATAACCTCA GCCTCA TTCA TGAGGC TTCTTAATTCCCAGC YPK_4181 4612157 - 4610943 - | sodium/glutamate symporter TERM 4833 4612772 - 4612751 - g 71 -2.9 -5.00616 | GCTGGCGCTAAAAAA CGGTGGG GCAGATAT CCCAACG ATGATGGCGGCGCTG TERM 4834 4613325 - 4613313 - g 76 -9.1 -3.88498 | opp_overlap 4613312 CCGTTATATATGAAA CGCCT AAA AGGCG GTGTACTGGCCAATG YPK_4182 4612362 - 4613780 + | uracil-xanthine permease TERM 4835 4613806 - 4613831 + F 100 -9.1 -5.31275 | gap 1, opp_overlap 4613806 4613823 4613825 AACACATCACCTAAA TGGCCGGTCATT AAT GAT-ACCGGCCA TTTTTTATGGTCCGA TERM 4836 4613831 - 4613806 - f 73 -8.4 -3.71265 | gap 1, opp_overlap 4613806, overlap 4613823 4613825 AACACATCACCTAAA TGGCCGGTCAT TAATG AT-ACCGGCCA TTTTTTATGGTCCGA YPK_4183 4613926 - 4615635 + | AsmA family protein TERM 4837 4615731 - 4615750 + T 79 -8.6 -4.11216 | opp_overlap 4615731 TCATCCGACGGCAAA TCACTGGC TCAT GTCAGTGA TTTTAAGGGTACCAG YPK_4184 4616693 - 4615770 - | thioesterase domain-containing protein YPK_4185 4617316 - 4616879 - | D-tyrosyl-tRNA(Tyr) deacylase YPK_4186 4618207 - 4617323 - | ribonuclease BN YPK_4187 4618894 - 4618304 - | HAD family hydrolase TERM 4838 4619194 - 4619170 - R 100 -14.3 -3.75738 | TAGGAGGAGTAAGAA CTCAGGGCGCC TTG AGCGCCCTAAG TATCAACAATGCAAA YPK_4188 4621039 - 4619216 - | GTP-binding protein TypA TERM 4839 4622388 - 4622378 - g 71 -6.8 -4.13945 | ACCTTTATGCCAAAA CCGA TGT TCGG CGATAACGGCTCAGG YPK_4189 4621601 - 4623010 + | glutamine synthetase, type I TERM 4840 4623111 - 4623128 + F 100 -11.3 -5.28826 | CCGTGGAAACTTTTG GCCCATC TTAG GATGGGC TTTTTTCTCCACTTT YPK_4190 4623263 - 4624312 + | signal transduction histidine kinase, nitrogen specific, NtrB TERM 4841 4625350 - 4625339 - g 74 -4.4 -4.98531 | overlap 4625332 CGTGGAAAGCAAAAA TCTG CATC CAGA GACCGAAGCGGCGCT YPK_4191 4624320 - 4625732 + | nitrogen metabolism transcriptional regulator, NtrC, Fis family TERM 4842 4625747 - 4625780 + T 83 -11.8 -2.80994 | gap 1, opp_overlap 4625759 4625766 GTTCCCGCCAGATGG TCACCCTCAAGAGCG ATAAC CGCACT-GAGGGTGA TATCGTCAGATTACA YPK_4192 4627159 - 4625786 - | oxygen-independent coproporphyrinogen III oxidase TERM 4843 4626363 - 4626389 + g 71 -8.6 -3.70102 | opp_overlap 4626362 TGCAAAATATCCAAC CGTTGCTCCGCC GTT GGCAGATCAGCG TCTTTGATTTTACGT YPK_4193 4627908 - 4627342 - | hypothetical protein TERM 4844 4628107 - 4628055 - H 100 -13.6 -3.99405 | gap 1, opp_overlap 4628071 4628093, overlap 4628071 GGAATCTAGCAGAAA GAAGAGAAAGAAAAAAGGCGGCAGG TTAA CCTGTCGCCTTTTTTCGCAC-CTTC TGCGGAAGGATATCC TERM 4845 4628092 - 4628071 - H 100 -11.5 -5.7827 | opp_overlap 4628071, overlap 4628055 AAGAGAAAGAAAAAA GGCGGCAGG TTAA CCTGTCGCC TTTTTTCGCACCTTC TERM 4846 4628071 - 4628092 + H 100 -13.7 -5.03145 | opp_overlap 4628055 4628071 AAGAGAAAGAAAAAA GGCGGCAGG TTAA CCTGTCGCC TTTTTTCGCACCTTC YPK_4194 4628652 - 4629302 + | GTP-binding protein HSR1-related TERM 4847 4629449 - 4629479 + T 76 -11.1 -2.62184 | opp_overlap 4629451 AAAATCCCCATAAAA AACGCCCCAGTCA ATAAA TGACTGGGGCGGC TAATATACAGCCAAA TERM 4848 4629477 - 4629451 - T 100 -18.1 -5.25803 | opp_overlap 4629449 AATCCCCATAAAAAA CGCCCCAGTCA ATAAA TGACTGGGGCG GCTAATATACAGCCA YPK_4195 4632508 - 4629710 - | DNA polymerase I TERM 4849 4632361 - 4632328 - G 100 -10.5 -4.72272 | gap 1 CTTTTGCATCAAAAA CTACTGCAACAT-GAC TTG GTCGATATTGCAGCAG CAGACTGCGTAGCAT TERM 4850 4632982 - 4632966 - R 100 -6.5 -6.11392 | opp_overlap 4632966 4632965 AAATAAATAAAAAAA GGGGC AACAAAA GCCCC CTCTTTATGTACTAA YPK_4196 4633622 - 4632999 - | DSBA oxidoreductase YPK_4197 4634636 - 4633650 - | aminoglycoside phosphotransferase YPK_4198 4634996 - 4634727 - | hypothetical protein TERM 4851 4634820 - 4634830 + g 71 -6.8 -4.15565 | CACCTCGGTTGAGGC TGCG CCC CGCA TTTTCAGATGATAGA YPK_4199 4635150 - 4635737 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 4852 4635754 - 4635774 + G 93 -14.1 -3.44051 | opp_overlap 4635752 GAACTACAAGTCACC GCCGCTATT AGG AATAGCGGC TTATAGTGGTACAGG TERM 4853 4635950 - 4635936 - g 79 -10 -3.87815 | opp_overlap 4635938 CTGGAGCGCTACAAA CACTGG TCG CCAGTG ATTGCCGTTGGGCAC YPK_4200 4635737 - 4636267 + | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 4854 4636351 - 4636330 - T 84 -10.1 -3.74693 | TGCCACCGTATTAAA GGTGATCGC TCAG GCGGTCACC GAACTCGATAATAAA YPK_4201 4637533 - 4636325 - | transposase mutator type YPK_4202 4637884 - 4637654 - | hypothetical protein TERM 4855 4638017 - 4637997 - H 100 -10.4 -5.36441 | opp_overlap 4637995 4637990 4637997 CGCGCACAGAAAAAA CCCCACGC TTTTG GCATGGGG TCTTGGCTTTATTTG TERM 4856 4637997 - 4638017 + H 71 -8.9 -3.26841 | opp_overlap 4637997, overlap 4637995 4637990 CGCGCACAGAAAAAA CCCCACGCT TTT GGCATGGGG TCTTGGCTTTATTTG TERM 4857 4638256 - 4638246 - H 74 -6.8 -4.27316 | opp_overlap 4638246 TCTCTCAATTCAAAA CACC TTC GGTG TTGTAAGGTTAAGCC TERM 4858 4639368 - 4639379 + H 74 -4.4 -5.06816 | CCACTTTCGTGTTTG CACA GTGC TGTG TTTTTATTAAACAGT TERM 4859 4639415 - 4639441 + H 70 -9.4 -2.75844 | opp_overlap 4639391 4639393, overlap 4639414 4639417 CCAGCTGGTATCTGC GACTGGCTTCAG CTC CAGGAGCTAGTC CTTTCACCTAACGCC TERM 4860 4639875 - 4639893 + H 82 -10.3 -3.57798 | overlap 4639868 CTTGGTCTTCCGGCG TGCGGGT TTTTC ACCCGCA TTATCGTTACTTATG TERM 4861 4641331 - 4641368 + H 78 -5.7 -4.7629 | opp_overlap 4641331 4641325 4641334, overlap 4641334 ATTGTTAAAGAGCAA TATCGTAAACACGACTT GGTA AAGTCATCTTTACGTTA TTTTTCAGTTCATAA TERM 4862 4641334 - 4641365 + H 78 -7.4 -4.47888 | opp_overlap 4641331 4641325 4641334, overlap 4641331 GTTAAAGAGCAATAT CGTAAACACGACTT GGTA AAGTCATCTTTACG TTATTTTTCAGTTCA TERM 4863 4643847 - 4643830 - g 81 -12.7 -2.6544 | overlap 4643829 CAGGAGAATATGAAG CGGGCAG TATA CTGCCCG GCGAAATAGAGTTGG YPK_4206 4643733 - 4644422 + | GntR domain-containing protein TERM 4864 4645728 - 4645742 + G 74 -4.2 -4.92783 | overlap 4645725 4645729 TGGGATTGCTATCAG TGCGAC TGT GTTGCG TTTTTATGATGGGTT YPK_4207 4644502 - 4645926 + | major facilitator transporter YPK_4208 4646093 - 4645923 - | hypothetical protein YPK_4209 4647072 - 4646146 - | ribokinase YPK_4210 4647542 - 4647123 - | RbsD or FucU transport TERM 4865 4647714 - 4647746 + r 76 -10 -3.29211 | gap 1, opp_overlap 4647719, overlap 4647709 4647701 4647719 TAGTGTGAATGATGA TAGAAGAGGCCGTTA TGAT TAACGGCCTCT-CAA TTAAATTTCCACTTG TERM 4866 4647742 - 4647719 - R 100 -15.4 -3.57731 | opp_overlap 4647714 4647709 4647701 4647719 TGAATGATGATAGAA GAGGCCGTTA TGAT TAACGGCCTC TCAATTAAATTTCCA TERM 4867 4647719 - 4647742 + r 100 -15.4 -2.58812 | opp_overlap 4647719, overlap 4647714 4647709 4647701 TGAATGATGATAGAA GAGGCCGTTA TGAT TAACGGCCTC TCAATTAAATTTCCA YPK_4211 4649615 - 4647747 - | potassium uptake protein TERM 4868 4648181 - 4648214 + g 75 -11.7 -2.72471 | gap 1, opp_overlap 4648182 4648184, overlap 4648180 4648184 TTGCTCGCGACATAT ACACCGCC-GTACCGG GTA CCCGTACTGGCGGTGA CTTCTCTAGTGAAGC TERM 4869 4648213 - 4648182 - G 100 -15.2 -2.98823 | gap 1, opp_overlap 4648181 4648180 4648184, overlap 4648184 TGCTCGCGACATATA CACCGCC-GTACCGG GTA CCCGTACTGGCGGTG ACTTCTCTAGTGAAG TERM 4870 4648184 - 4648211 + g 78 -12 -2.64051 | gap 1, opp_overlap 4648182 4648184, overlap 4648181 4648180 CTCGCGACATATACA CCGCC-GTACCGG GTA CCCGTACTGGCGG TGACTTCTCTAGTGA TERM 4871 4648211 - 4648184 - G 81 -12 -3.05022 | gap 1, opp_overlap 4648184 4648181 4648180, overlap 4648182 CTCGCGACATATACA CCGCC-GTACCGG GTA CCCGTACTGGCGG TGACTTCTCTAGTGA TERM 4872 4649533 - 4649512 - G 71 -3 -4.94902 | TAATGACCAGAAAAA CACTCTCT CAAGGT ATAGAGTG GGCTGGTGCCAATAT TERM 4873 4650448 - 4650438 - g 79 -3.2 -5.18726 | CGGGTACAAGAAAAA CAGA ATT TCCG CTCACTGCTGATCAG YPK_4212 4649889 - 4651427 + | ATPase TERM 4874 4651808 - 4651796 - g 87 -6.9 -5.02476 | overlap 4651797 AGACCTGGCAAAAAA CCCGC CAG GCGGA GATAGCCTGCAAACG YPK_4213 4651431 - 4652897 + | von Willebrand factor type A TERM 4875 4652968 - 4652940 - T 100 -9.5 -4.84529 | TGATAAAGTTAAAAA CCCGCGATGACTG ATA CCGTTATCGCGAG TTAGCATAGGGGGAT YPK_4214 4653988 - 4652996 - | aspartate--ammonia ligase YPK_4215 4654158 - 4654619 + | AsnC family transcriptional regulator YPK_4216 4654712 - 4655152 + | flavodoxin/nitric oxide synthase YPK_4217 4655533 - 4657422 + | glucose inhibited division protein A YPK_4218 4657567 - 4658187 + | methyltransferase GidB YPK_4219 4658854 - 4659237 + | ATP synthase I chain TERM 4876 4659615 - 4659635 + G 78 -6.1 -4.71426 | TCATCGCACCATTAG CCCTAACAG TCT TTGTTTGGG TTTTATTGATGAACA YPK_4220 4659293 - 4660117 + | ATP synthase F0, A subunit YPK_4221 4660167 - 4660406 + | ATP synthase F0, C subunit YPK_4222 4660468 - 4660938 + | ATP synthase F0, B subunit YPK_4223 4660953 - 4661486 + | ATP synthase F1, delta subunit YPK_4224 4661501 - 4663042 + | ATP synthase F1, alpha subunit TERM 4877 4663050 - 4663080 + F 89 -12.7 -2.82516 | gap 1, overlap 4663039 CCTGGTAACGCTATG CGGTCCTGCTTTTC GTTA GGAAAGCAGG-CCG TCTGGTAATGAGGAG YPK_4225 4663104 - 4663967 + | ATP synthase F1, gamma subunit YPK_4226 4664123 - 4665505 + | ATP synthase F1, beta subunit YPK_4227 4665527 - 4665949 + | ATP synthase F1, epsilon subunit TERM 4878 4666073 - 4666098 + F 100 -14.1 -5.22794 | opp_overlap 4666065 4666073 TAAATAACGATAGAA TGCCAGTCGGT GAAA ACTGACTGGCA TTTTTTAATACTTAT TERM 4879 4666098 - 4666073 - f 93 -11.9 -3.66438 | opp_overlap 4666073, overlap 4666065 TAAATAACGATAGAA TGCCAGTCGGT GAAA ACTGACTGGCA TTTTTTAATACTTAT TERM 4880 4666332 - 4666299 - f 75 -10.6 -2.80654 | gap 1, opp_overlap 4666299, overlap 4666298 TCAATAAATCATAAG CAAGGATTAT-CGAA TTTCT TTCGGATAATCCTTG TTTTCTGTCGTAAAA TERM 4881 4666299 - 4666332 + F 100 -10.6 -4.57353 | gap 1, opp_overlap 4666298 4666299 TCAATAAATCATAAG CAAGGATTAT-CGAA TTTCT TTCGGATAATCCTTG TTTTCTGTCGTAAAA TERM 4882 4666411 - 4666394 - f 91 -4.8 -5.61596 | ATTTTGACAAAAAAA CGGCAA AAAACG TCGCCG ATCACCGACACTTTT TERM 4883 4666927 - 4666950 + G 71 -8.8 -3.63515 | CAACGTCTGCTGGCC GCTAAGCCCG AGGG CGGGATTGGC TTGTTGACAGTAAAA TERM 4884 4667144 - 4667154 + G 73 -5.4 -4.55287 | TGGATAATAATAATG CTCA AGG TGAG TTTTATATCACTGAC TERM 4885 4667318 - 4667345 + G 73 -5.4 -4.54727 | AAAAATTATTGTTAG CGGGCGTGATGC TATT GGATCCCTCCCG TTTTGATTTGCGCGG YPK_4228 4666570 - 4667940 + | UDP-N-acetylglucosamine pyrophosphorylase YPK_4229 4668141 - 4669970 + | glucosamine--fructose-6-phosphate aminotransferase, isomerizing TERM 4886 4670018 - 4670035 + T 100 -9.1 -5.61913 | opp_overlap 4670018 AGCGTATTAACGAAA GCCGGCA AATT TGTCGGC TTTTTTGTCTTTATT YPK_4230 4670248 - 4670129 - | hypothetical protein YPK_4231 4670453 - 4671493 + | phosphate ABC transporter, periplasmic phosphate-binding protein YPK_4232 4671722 - 4672678 + | phosphate ABC transporter, inner membrane subunit PstC YPK_4233 4672680 - 4673567 + | phosphate ABC transporter, inner membrane subunit PstA TERM 4887 4673624 - 4673609 - f 86 -9 -4.27796 | opp_overlap 4673609 4673611 CAATAAATTCCAAAA TACCGC TTCG GCGGTA TTGGCTAAAAGAGAG YPK_4234 4673648 - 4674424 + | phosphate ABC transporter, ATPase subunit YPK_4235 4674512 - 4675228 + | phosphate uptake regulator, PhoU TERM 4888 4675238 - 4675262 + F 100 -7.8 -5.626 | AAATAATATTTAACC CCGGTCAGCC TACTC GTTTGACCGG TTTTTTTATCCACTC TERM 4889 4675791 - 4675778 - g 71 -3.9 -4.7416 | GGAAAATGCTAAAAA CAATA CTAT TATTG CCGCAGGTACACAGT YPK_4236 4675524 - 4676195 + | hypothetical protein YPK_4237 4676415 - 4677269 + | extracellular solute-binding protein YPK_4238 4677440 - 4678177 + | polar amino acid ABC transporter, inner membrane subunit TERM 4890 4678282 - 4678302 + G 74 -11.1 -3.0395 | TGGTGATCAGTATCA TGGCTGGGG TAA CCTCAGCCG TATTAGGCACTGTGT TERM 4891 4678903 - 4678872 - g 82 -5.2 -5.15634 | gap 1, opp_overlap 4678873, overlap 4678876 CATGCCATTAAAAAA CA-AAGCGCCATG GCACGTT CATGGCGCTGGTG GTGTAACAAGCTAAC TERM 4892 4678898 - 4678876 - g 100 -10.6 -5.0917 | opp_overlap 4678873, overlap 4678872 CCATTAAAAAACAAA GCGCCATG GCACGTT CATGGCGC TGGTGGTGTAACAAG YPK_4239 4678179 - 4678934 + | polar amino acid ABC transporter, inner membrane subunit YPK_4240 4679637 - 4678969 - | HAD family hydrolase TERM 4893 4679107 - 4679092 - G 88 -8.2 -4.75472 | overlap 4679095 4679102 GGCACAGTAATAAAA CACCGG AATA CCGGCG GCAATCCCGGCCTGG TERM 4894 4679818 - 4679844 + H 72 -10.1 -2.88849 | gap 1, opp_overlap 4679807, overlap 4679813 4679819 ACATCCATGTAGGCT CGAGCCGCGCCA TCCT TGGCGCGGA-CG CTTTACTCCTCTGCC TERM 4895 4679819 - 4679845 + H 84 -10.1 -3.82218 | gap 1, opp_overlap 4679807, overlap 4679813 4679818 CATCCATGTAGGCTC GAG-CCGCGCCA TCCT TGGCGCGGACGC TTTACTCCTCTGCCT TERM 4896 4680065 - 4680050 - H 75 -3.2 -5.19916 | AAAAGAGGTAAAAAA GAGTGT GATC ACGCTC TAAACAAATGGTTTT TERM 4897 4680670 - 4680695 + G 78 -6.1 -4.73677 | overlap 4680672 GGTAATCTGACCTCT CACAGTGTACT GTTG GGTGCACTGGG TTTCTTTATTATCGC TERM 4898 4681025 - 4681040 + G 78 -6 -4.75219 | ATGTGGACAGTATCA GCTCCG TTGC CGGTGC TTTTATTGGTACTTC YPK_4241 4680130 - 4681458 + | xanthine/uracil/vitamin C permease YPK_4242 4682003 - 4682623 + | hypothetical protein YPK_4243 4682685 - 4682966 + | hypothetical protein TERM 4899 4683417 - 4683373 - T 70 -7.9 -3.73534 | opp_overlap 4683382, overlap 4683362 4683361 4683375 4683382 4683409 TAACCCCAGCAAGAA GATGATCAACTTGCTGCGTGA TAG TGACGCAGCAAGTTATTGAGC AATAAACCGGAGCTT TERM 4900 4683415 - 4683375 - T 73 -9.1 -3.44552 | opp_overlap 4683382, overlap 4683362 4683361 4683373 4683382 4683409 ACCCCAGCAAGAAGA TGATCAACTTGCTGCGTGA TAG TGACGCAGCAAGTTATTGA GCAATAAACCGGAGC TERM 4901 4683408 - 4683382 - T 100 -13.8 -3.30452 | opp_overlap 4683382, overlap 4683362 4683361 4683375 4683373 CAAGAAGATGATCAA CTTGCTGCGTGA TAG TGACGCAGCAAG TTATTGAGCAATAAA TERM 4902 4683382 - 4683408 + T 100 -13.8 -3.62597 | opp_overlap 4683362 4683361 4683382 4683375 4683373 CAAGAAGATGATCAA CTTGCTGCGTGA TAG TGACGCAGCAAG TTATTGAGCAATAAA YPK_4244 4684630 - 4683431 - | trans-2-enoyl-CoA reductase (NAD(+)) TERM 4903 4684296 - 4684311 + g 73 -5.4 -4.65895 | opp_overlap 4684296 ATCTCATCAGAGAAC GCATCG CCGT TGATGC TTTTTGCGTACAAGC TERM 4904 4684433 - 4684417 - G 73 -3.6 -4.86731 | GGCGTTCAAAGAAAA CGCCCA GCGTA TCGGCG CCACAACCAAATGCT TERM 4905 4684605 - 4684618 + g 75 -5.9 -4.4891 | opp_overlap 4684605 4684600 GTCACACAGATAAAG CCGCG TACA CGTGG TTTTATAATCATGGG YPK_4245 4686201 - 4684837 - | tRNA modification GTPase TrmE TERM 4906 4685464 - 4685442 - G 73 -7.7 -4.07568 | opp_overlap 4685442, overlap 4685444 TGTGTTCCCGTAAAA CATCACGGG TGGTG CCCGCGATA TCCGTTACAATCGCC TERM 4907 4686319 - 4686295 - R 100 -15.1 -4.40561 | overlap 4686292 CTTCTGTAAAAAGAA TAAGGCGGTCA TAT TGACCGCCCTA AATACTCATGATTAT TERM 4908 4686358 - 4686376 + r 73 -5.9 -4.56597 | GTTATTTTTTCTTCT CGCGGCT GTGTA AGCCACG TTTTTCCAGACCACG YPK_4246 4687984 - 4686344 - | 60 kDa inner membrane insertion protein TERM 4909 4687022 - 4687038 + g 80 -6.5 -4.79955 | AGTCAGGTCCAGATG TGGCGCA ATT TCCGCCA TTTTATTCTGAATCT TERM 4910 4687823 - 4687839 + g 71 -9.3 -3.6053 | overlap 4687820 TTGACCCTGACCGCT GCCTGGC ACA GCCTGGC TTGCTTTATCACCGG YPK_4247 4688244 - 4687987 - | hypothetical protein TERM 4911 4688206 - 4688170 - GR 100 -16.7 -3.14211 | ACGCGGCCCCAGCAA CGGACTGATTACGAGCT GAT AGCCCCTAATCAGCCCG ATCAGGATGCGGGAG YPK_4248 4688534 - 4688208 - | ribonuclease P protein component YPK_4249 4688726 - 4688586 - | ribosomal protein L34 TERM 4912 4688768 - 4688754 - R 75 -7.2 -4.29139 | CTAAACTTAAAATAA TTACTG ATT CAGTAA ACGCGTTTGGCTGCT YPK_4250 4689249 - 4689109 - | hypothetical protein