TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.370374 %AT, 4040626 nt, 30731 terms. Intergenic: 0.465681 %AT, H2T: 485606 nt, 4498 terms; T2T: 166452 nt, 3832 terms; H2H: 238307 nt, 3292 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|117617447|ref|NC_008570.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome (length 4744448) TERM 1 465 - 509 + G 74 -14.2 -2.64933 | gap 1 TGACATCGGTAATCG TCCCCATCCCGTCGCGGTCGC CAGA GCGCCGGCG-CGGGGTGCGGA TCCTGTGAATAACTC TERM 2 924 - 936 + G 74 -4.8 -4.58283 | TGCCAACAAGGAGCG CTCC CAGGA GGAG TTTTTCCACACCTTC dnaA-1 223 - 1593 + | chromosomal replication initiator protein DnaA dnaN 1677 - 2780 + | DNA polymerase III, beta subunit TERM 3 3170 - 3200 + G 75 -3.8 -4.72272 | overlap 3173 3174 CTGACCGGCGGGCCT CAGGCTCGTCGGGC CTG GCTCGACTGGGGTG TTTTTCATCAGGAGC TERM 4 3274 - 3260 - g 71 -11.4 -3.53012 | CGTCGCCTGCTGAAA CAGCGC AAT GCGCTG CTGCGTCAGAGCAGC TERM 5 3661 - 3672 + G 74 -5.8 -4.45473 | opp_overlap 3660 3661 TTTGAATCAACATAG CAGC CGTG GCTG TATTTTTTTAATTGA recF 2783 - 3886 + | DNA replication and repair protein RecF gyrB 3883 - 6294 + | DNA gyrase, B subunit TERM 6 6323 - 6341 + T 100 -11.7 -6.22802 | opp_overlap 6323 GCTCGATATAAAAAA GCCGCTC CCTGT GAGCGGC TTTTTTTTTCTGGCG TERM 7 6341 - 6323 - T 100 -11.7 -5.36441 | opp_overlap 6323 GCTCGATATAAAAAA GCCGCTC CCTGT GAGCGGC TTTTTTTTTCTGGCG AHA_0005 6786 - 6409 - | glyoxalase family protein superfamily TERM 8 6700 - 6682 - G 70 -10.2 -3.67517 | CACGAACATGGCAAA GGTGGGGG ACT CCTCCACC GGTGGGCGTCCGAAC AHA_0006 7557 - 6853 - | transcriptional regulator TERM 9 7018 - 6994 - G 74 -9.9 -3.82097 | CCGAAAGTGACGAAA GTCCTGGCGCA GCT CGCACCAGGCC ACCAGTACCCGCACC AHA_0007 7792 - 8205 + | 16 kDa heat shock protein A AHA_0008 8298 - 8735 + | 16 kDa heat shock protein A TERM 10 8757 - 8786 + T 100 -16.5 -4.96848 | opp_overlap 8759, overlap 8759 CGGCGCGCGATAAAC AAGAGAGGCCTGC ATGT GCAGGCCTCTCTG TTTTTGTATCGCCGA TERM 11 8784 - 8759 - T 100 -19.1 -4.06419 | opp_overlap 8757 8759 GCGCGCGATAAACAA GAGAGGCCTGC ATGT GCAGGCCTCTC TGTTTTTGTATCGCC TERM 12 8759 - 8784 + T 100 -19.1 -4.11141 | opp_overlap 8759, overlap 8757 GCGCGCGATAAACAA GAGAGGCCTGC ATGT GCAGGCCTCTC TGTTTTTGTATCGCC avtA 10059 - 8809 - | valine--pyruvate transaminase AHA_0010 11330 - 10506 - | AraC/XylS family transcriptional regulator AHA_0011 10343 - 10576 + | hypothetical protein AHA_0012 11423 - 12550 + | multidrug resistance protein D TERM 13 12582 - 12553 - T 71 -10 -3.59979 | TCGTTCCACGTGAAA CATCAGCTGCCG ATAAAA CGGTAGCCGATG CCGGATTCAGTTTCG AHA_0013 13238 - 12555 - | KDP operon transcriptional regulatory protein KdpE TERM 14 12611 - 12630 + g 73 -11.4 -3.61715 | CGATCAGCGTGGGTT GCTGGGGG TTAT CTCCCAGC TTCTTGCGCAGGCTG TERM 15 13207 - 13195 - G 85 -6.2 -5.03314 | overlap 13196 CTGATCCGCAAAAAA CGGC GGATG GCCG CCTCGTCGTCAATGA AHA_0014 15857 - 13269 - | sensory kinase in two-component regulatory system wtih KdpE TERM 16 13886 - 13918 + g 71 -13.3 -3.07043 | opp_overlap 13875 CATATTCCAGCAGGG TGCTGCCGGCCCCCA TGA TGGTGGCCAGCGGCG TCTTCAGATCGTGGG TERM 17 14341 - 14378 + g 74 -14.9 -2.52676 | gap 1 AGCACCTCTTCCGGG CTGCTGGCGGTG-GCCAG CCC CTGGCTCAGCGACAGCAG TGCATTGCCCAGCTG TERM 18 15953 - 15970 + r 81 -8.3 -4.30844 | opp_overlap 15955, overlap 15955 GTCCCGAACGGCAAG GAGCGCC CTCA GGCGCCC TTTTGATGATCGAGT kdpC 16488 - 15961 - | K+-transporting ATPase, C subunit kdpB 18606 - 16549 - | K+-transporting ATPase, B subunit kdpA 20344 - 18662 - | potassium-transporting ATPase subunit A AHA_0018 20432 - 20355 - | putative K+-transporting ATPase, F subunit KdpF TERM 19 20636 - 20621 - R 100 -11.8 -5.14563 | opp_overlap 20621 GCCGCGATCAAAAAA CCCGGC CTAG GCCGGG TTTGGTAGCAAGTTG TERM 20 20621 - 20636 + r 83 -11.8 -3.737 | opp_overlap 20621 GCCGCGATCAAAAAA CCCGGC CTAG GCCGGG TTTGGTAGCAAGTTG gor 22020 - 20671 - | glutathione-disulfide reductase TERM 21 22096 - 22072 - R 86 -12.2 -3.88291 | gap 1, opp_overlap 22072 22069 22068, overlap 22087 CATGATGGGGATAAA GCGGCTGGCTC ACAA GAGCCAGC-GC TCAGTTATGTTGGAT TERM 22 22072 - 22096 + r 72 -12.2 -2.66522 | gap 1, opp_overlap 22072 22087, overlap 22069 22068 CATGATGGGGATAAA GCGGCTGGCTC ACAA GAGCCAGC-GC TCAGTTATGTTGGAT AHA_0020 24094 - 22097 - | sensor histidine kinase TERM 23 24135 - 24183 + r 70 -3.2 -4.7497 | gap 2, opp_overlap 24147 24181, overlap 24147 24150 TGTCGTGTTTCGTTA GCGT-GATAA-AAACAAGGCCCCG AAA CGGGGCCTTGTTGATTAGGAACGG TTTTTAATGACTCCC TERM 24 24147 - 24169 + r 100 -19.2 -3.33815 | opp_overlap 24147, overlap 24135 24150 TTAGCGTGATAAAAA CAAGGCCCCG AAA CGGGGCCTTG TTGATTAGGAACGGT TERM 25 24169 - 24147 - R 100 -19.2 -4.84359 | opp_overlap 24147 24135 24150 TTAGCGTGATAAAAA CAAGGCCCCG AAA CGGGGCCTTG TTGATTAGGAACGGT TERM 26 24150 - 24166 + r 100 -15.1 -3.81146 | opp_overlap 24147, overlap 24147 24135 GCGTGATAAAAACAA GGCCCCG AAA CGGGGCC TTGTTGATTAGGAAC TERM 27 24233 - 24181 - R 74 -11.3 -3.21099 | opp_overlap 24135 24195, overlap 24229 CTTGTTGATTAGGAA CGGTTTTTAATGACTCCCTTTCGCC TTG GGCGGAATGGATTCGTCAAACACCG GCAGCGGTTTGTGTT AHA_0021 27267 - 24187 - | acriflavin resistance plasma membrane protein AHA_0022 28389 - 27283 - | RND efflux transporter TERM 28 28353 - 28381 + g 75 -3.9 -4.74132 | gap 1, opp_overlap 28332, overlap 28356 TGCCGAACAGGGCCA GCGCGATGAGCA ACATGA TGCTCATC-CAC TTTTTCATGAACTCT AHA_0023 29045 - 28422 - | TetR family transcriptional regulator TERM 29 28956 - 28970 + g 71 -5.7 -4.34486 | GAGTACTTCATGAGC CGCAT CGAAA ATGCG TTCTTTCTTGTTCAT TERM 30 29573 - 29592 + H 73 -6.4 -4.45168 | overlap 29569 TTGCTGTATGACGAG GATGACCG TTCA TGGTCGTC TTTGTGTTTTGAAAA TERM 31 29625 - 29612 - H 73 -5.3 -4.64861 | TGTTTTGAAAAGAAA GCTTT TTTT AAAGC CTCGGTGATTAGCGC TERM 32 29710 - 29739 + H 84 -13.7 -3.0636 | opp_overlap 29717, overlap 29717 TCACCGACCACATTC TGAAAAACCCCGC TCAG GCGGGGTTTTTTG CTTTCTGTCGTCTGC TERM 33 29717 - 29732 + H 100 -11.8 -5.4387 | opp_overlap 29717, overlap 29710 CCACATTCTGAAAAA CCCCGC TCAG GCGGGG TTTTTTGCTTTCTGT TERM 34 29732 - 29717 - H 100 -11.8 -4.61231 | opp_overlap 29717 29710 CCACATTCTGAAAAA CCCCGC TCAG GCGGGG TTTTTTGCTTTCTGT TERM 35 29758 - 29771 + H 74 -8.1 -4.05747 | TCTGTCGTCTGCCAG CCTGC TGCC GCAGG TTTCTGTCACGTCTG AHA_0028 29998 - 30399 + | ricin-type beta-trefoil lectin domain-containing protein TERM 36 30402 - 30386 - T 77 -8 -4.19506 | AGCTGAACCTGAAAA GCCTCA TCTGG TGAGGC ATCAGGCCAACCTGG pyk-1 31483 - 30404 - | pyruvate kinase TERM 37 30941 - 30959 + g 70 -10.2 -3.57039 | opp_overlap 30923 GGCCTCGAGCAGGCG GGCCGTCA GGA TGTCGGCC TTGTCCTTGTCGGTC TERM 38 31541 - 31508 - R 100 -21.1 -4.25104 | opp_overlap 31515 31540, overlap 31509 CTGTTGCGAGGAAAA TGCACAAGGGTGGCC GACG GGCCACCCTTGTGCT GAACGGGGATCAGTG TERM 39 31540 - 31509 - R 100 -24.6 -3.14848 | opp_overlap 31515, overlap 31508 TGTTGCGAGGAAAAT GCACAAGGGTGGCC GACG GGCCACCCTTGTGC TGAACGGGGATCAGT TERM 40 31515 - 31534 + r 95 -15 -3.40403 | opp_overlap 31509 31508 GAGGAAAATGCACAA GGGTGGCC GACG GGCCACCC TTGTGCTGAACGGGG AHA_0030 32888 - 31551 - | sugar phosphate permease TERM 41 33146 - 33135 - H 72 -3.6 -4.72696 | TGGAAATAAAAATAA CGGC ATGT GCCA AATATTAGATGTACT TERM 42 33441 - 33455 + G 100 -5.6 -5.40474 | AGTCGATATTATCAT GTCGTC ATC GCCGAC TTTTTTTAACACGCT AHA_0031 33247 - 34461 + | ABC-type Fe3+ transport system, periplasmic component TERM 43 35909 - 35927 + G 83 -8 -4.59773 | CACCCTGGCCTGTGG GCTGGGTG AGG CGCCCCGC TTTTTGCACCTCAAC AHA_0032 34458 - 36890 + | phosphoglycerate transport regulatory protein PgtB AHA_0033 36874 - 38151 + | C4-dicarboxylate transport transcriptional regulatory protein DctD AHA_0034 38203 - 38517 + | hypothetical protein TERM 44 38527 - 38559 + T 95 -14.1 -3.48276 | overlap 38492 38491 38528 CGCTGAATGGGGTTG TGCGCCATGAGCCGC AGA GTTGCTCATGGCGCC TTGTCTCAGGCGACG TERM 45 38528 - 38558 + T 90 -17.6 -2.68823 | overlap 38492 38491 38527 GCTGAATGGGGTTGT GCGCCATGAGCCGC AGA GTTGCTCATGGCGC CTTGTCTCAGGCGAC AHA_0035 39377 - 38565 - | Cof family hydrolase TERM 46 39432 - 39403 - R 93 -12.9 -3.95584 | opp_overlap 39398 GGGTTACGAATGAAA GCGGGAGCAGT GTACAGCA ACCGCTCCCGC TACCCCATTTATTTA TERM 47 39474 - 39464 - R 70 -3.2 -4.77122 | overlap 39467 GGATACAAAAAATAA CCAG CCG CTAG TAGCGTGCGAAGAAG AHA_0036 40511 - 39471 - | lysophospholipase L2 AHA_0037 41173 - 40508 - | chloramphenicol acetyltransferase AHA_0038 41934 - 41173 - | tRNA guanosine-2'-O-methyltransferase TERM 48 41964 - 41982 + r 72 -11.7 -2.83677 | opp_overlap 41962 41961, overlap 41970 CACAGGATCAAATCG GGCTGGC GCCGG GCCAGCC TGTCGTAAATTCGTT TERM 49 42128 - 42102 - R 80 -8.7 -4.07568 | gap 1, opp_overlap 42101 42103, overlap 42103 42105 CTTGTCTCTTGAAAA GCAGCAGGCGGC TTGC GCCGCCTG-TGG TCAGTTTTTCTGTCG TERM 50 42103 - 42128 + r 79 -12.5 -2.90854 | opp_overlap 42102 42103 42105, overlap 42101 TTGTCTCTTGAAAAG CAGCAGGCGGC TTGC GCCGCCTGTGG TCAGTTTTTCTGTCG TERM 51 42127 - 42103 - R 76 -12.2 -3.04398 | gap 1, opp_overlap 42103 42101, overlap 42102 42105 TTGTCTCTTGAAAAG CAGCAGGCGGC TTGC GCCGCCTG-TG GTCAGTTTTTCTGTC TERM 52 42126 - 42105 - R 72 -11.5 -3.08032 | opp_overlap 42103 42101, overlap 42103 42102 GTCTCTTGAAAAGCA GCAGGCGGC TTGC GCCGCCTGT GGTCAGTTTTTCTGT AHA_0039 44246 - 42129 - | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase ((ppGpp)ase) TERM 53 44368 - 44341 - R 100 -15.6 -3.32294 | overlap 44343 GTAAATGGGGGAGAA CAGTCGGCACCC GGGC GGGCGCCGACTA TAAGAAATAACTGAC TERM 54 44366 - 44343 - R 100 -16 -3.22668 | overlap 44341 AAATGGGGGAGAACA GTCGGCACCC GGGC GGGCGCCGAC TATAAGAAATAACTG rpoZ 44659 - 44384 - | DNA-directed RNA polymerase, omega subunit AHA_0041 45593 - 44739 - | guanylate kinase TERM 55 45542 - 45520 - G 100 -14.2 -5.60993 | TGGCGGATAAAAAAA CGGCCGGAAT CAT ATTCCAGCCG ATCAAAGTATTCGTA TERM 56 45643 - 45657 + r 70 -10 -3.33696 | ATCCCTGCTTCACTG CTCGGA AAT TCCGAG TTGCTTCCCGGCGGG AHA_0042 46719 - 45637 - | lipopolysaccharide heptosyltransferase kdkA 46888 - 47601 + | 3-deoxy-D-manno-octulosonic-acid kinase AHA_0044 47729 - 48535 + | sensory box/GGDEF family protein, putative TERM 57 48595 - 48562 - T 75 -12.5 -2.64616 | gap 1 CGCTCACTTACACCA TGACGCTGGCATACCC AGA GGG-AGGCCAGCATCA GCAGGCCGCCCAGGG AHA_0045 49397 - 48543 - | hypothetical protein AHA_0046 49441 - 49899 + | hypothetical protein TERM 58 49968 - 49952 - T 100 -15.1 -5.60993 | GCTGGCATAAAAAAA CCGGCGC AGA GCGCCGG TAGAAGGGACAAATC AHA_0047 50215 - 50054 - | hypothetical protein AHA_0048 51129 - 50200 - | hypothetical protein TERM 59 51929 - 51955 + G 84 -15.9 -3.31792 | GGTCGCTATCTGGTG GTGGTGCCCGA GATGA TCGGGCGCCAC TTCTGCCGCTACTAC AHA_0050 51191 - 52165 + | LysR family transcriptional regulator trpS-1 53157 - 52144 - | tryptophanyl-tRNA synthetase II TERM 60 53204 - 53233 + r 83 -6.3 -4.87133 | opp_overlap 53206 53209, overlap 53206 CGACAAAGGGATGAA AACAATGACCGCC TCTC GGCGGTCACGGTG TTTTCTTTGGGGAAT TERM 61 53206 - 53231 + r 76 -8.9 -4.05678 | opp_overlap 53206 53209, overlap 53204 ACAAAGGGATGAAAA CAATGACCGCC TCTC GGCGGTCACGG TGTTTTCTTTGGGGA TERM 62 53231 - 53206 - R 91 -11.1 -4.33767 | opp_overlap 53206 53204, overlap 53209 ACAAAGGGATGAAAA CAATGACCGCC TCTC GGCGGTCACGG TGTTTTCTTTGGGGA TERM 63 53228 - 53209 - R 100 -13.6 -4.2693 | opp_overlap 53206 53204, overlap 53206 AAGGGATGAAAACAA TGACCGCC TCTC GGCGGTCA CGGTGTTTTCTTTGG TERM 64 53291 - 53262 - R 73 -5 -4.61199 | gap 1, overlap 53265 ATTTTACATAGAAAA GCAGTGCCGC-CT GTTTA AGAGCAGCACCAC CAGTAGTTGTGATTG AHA_0051 53783 - 53349 - | universal stress protein A TERM 65 54044 - 54060 + H 100 -9.4 -5.35224 | opp_overlap 54036 CTGAATACCGCTTTG GGGAGC CTCGC GCTCCC TTTTGTTTTTCTGCC AHA_0052 54250 - 55437 + | trans-2-enoyl-CoA reductase AHA_0053 57243 - 55453 - | TPR repeat-containing protein AHA_0054 57348 - 57977 + | ferritin TERM 66 58035 - 58014 - f 79 -13 -2.86747 | opp_overlap 58014, overlap 58011 CAGCCAGTACAATGA CGGCCCCT CTCAAC AGGGGCCG TTTGCTATTGCGGCA TERM 67 58014 - 58035 + F 93 -13 -3.92324 | opp_overlap 58014 58011 CAGCCAGTACAATGA CGGCCCCT CTCAAC AGGGGCCG TTTGCTATTGCGGCA AHA_0055 58135 - 59322 + | hypothetical protein TERM 68 59456 - 59474 + T 100 -17.4 -5.31456 | opp_overlap 59449 CTCATCAACTTCAGA CGCGGCCG CTT CGGCCGCG TTTTTTATGGGTTGC AHA_0056 60730 - 59510 - | fosmidomycin resistance protein TERM 69 61496 - 61511 + G 72 -2.5 -4.74801 | gap 1, overlap 61497 CGCCAGACTCGGCAA C-GGCC TCATC GGCCTG TTTTTCATGGGCTTC AHA_0057 60918 - 61556 + | leucine export protein LeuE AHA_0058 62346 - 61600 - | hypothetical protein TERM 70 61844 - 61832 - GT 70 -6.9 -4.18197 | overlap 61836 AGCTGGTATTGAAAA CGCAC CTG GCGCG GGCGTACCACCAGGG AHA_0059 63905 - 62289 - | hypothetical protein TERM 71 63420 - 63410 - GR 70 -6.8 -4.07568 | overlap 63411 TCTCTCGGTTCAAAA TGCC CCC GGCA GGCATGGTGCGAAGA AHA_0060 66385 - 63908 - | hypothetical protein AHA_0061 67102 - 66437 - | hypothetical protein TERM 72 67139 - 67124 - R 81 -11.8 -3.59979 | TCCTGTGATTGCAAA GGGCCC CGCA GGGCCC CGAATACTATGCGTC matB 67737 - 67162 - | fimbrillin MatB TERM 73 68000 - 68011 + H 100 -2.2 -6.01725 | TAAGACTTGTCCATT CTCT TATC AGGG TTTTTTGTTTTTCTT TERM 74 68612 - 68586 - g 77 -13.8 -3.29263 | opp_overlap 68590, overlap 68590 ATATTGTCTGCACAA GCAACGCATCAT ATT ATGGTGCGTTGC CTGCAAGCCGGTGCC evgA 68337 - 68960 + | positive transcription regulator EvgA TERM 75 69405 - 69380 - g 76 -9.9 -3.91897 | gap 1, opp_overlap 69384, overlap 69385 TTGTTGACCGATAAA TATAT-GCCGGA TGA TCCGGCCATATA TAAGAATATACACGT TERM 76 70914 - 70934 + G 71 -8.9 -3.92869 | overlap 70915 ATCATCGTCTCTCCA TGGCGACGG GGT CCGTGGCCG TTTATCACTGGGTAC TERM 77 71521 - 71508 - g 90 -8.1 -4.86621 | AGTTGCAATCAAAAA CCAGC GACG GCTGG TGCACCTTGCAACTG TERM 78 71583 - 71595 + G 83 -9.1 -4.25104 | opp_overlap 71583, overlap 71566 CTGCGGAGCAAGCCA GGCTG TTT CAGCC TTTTGGTCAGGCCAG AHA_0064 68963 - 72550 + | virulence sensor protein BvgS TERM 79 72578 - 72554 - T 83 -8.6 -4.43309 | opp_overlap 72558, overlap 72555 GAACCGGAATGAAAA TGAAGGCATG ACGGG CATGCCTTCC TGGATGGTCAACCGT TERM 80 72577 - 72555 - T 78 -12.1 -3.25262 | opp_overlap 72558, overlap 72554 AACCGGAATGAAAAT GAAGGCATG ACGGG CATGCCTTC CTGGATGGTCAACCG AHA_0065 73026 - 72586 - | hypothetical protein AHA_0066 73217 - 74872 + | sensor histidine kinase AHA_0067 75002 - 75733 + | response regulator receiver domain-containing protein AHA_0068 75855 - 77033 + | inner membrane protein YhjX TERM 81 77089 - 77059 - T 83 -14.8 -2.63723 | opp_overlap 77064, overlap 77064 GTCGCAGCAAGCAAT GAAAAGACCCGGAC CTG GCCCGGGTCTTTTT TATGCGCGGCTCATT TERM 82 77064 - 77084 + T 100 -12.5 -5.24129 | opp_overlap 77064 77059 AGCAAGCAATGAAAA GACCCGGAC CTG GCCCGGGTC TTTTTTATGCGCGGC TERM 83 77084 - 77064 - T 100 -14.7 -4.50193 | opp_overlap 77064, overlap 77059 AGCAAGCAATGAAAA GACCCGGAC CTG GCCCGGGTC TTTTTTATGCGCGGC purK 78231 - 77107 - | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 84 78194 - 78178 - G 72 -13.7 -2.80016 | opp_overlap 78191, overlap 78175 GGCCATCACGAAGTA GCGGCCA AGT TGGCCGC CTCCCAGCATGCCGA purE-1 78737 - 78228 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 85 78801 - 78784 - R 100 -12.7 -4.56597 | opp_overlap 78782 78781 TCTGGTTGGCAAAAA GAGCCGG CAAG CCGGCTC AGAATTTTTCGGGTC AHA_0071 79102 - 78800 - | hypothetical protein AHA_0072 80180 - 79107 - | sodium bicarbonate cotransporter TERM 86 80638 - 80690 + GH 74 -10.5 -3.55761 | gap 2, opp_overlap 80624 80621, overlap 80634 80635 80636 ACGAGCTGGGACGCA GCCC-GCTG-GCGCTGTTTGCCAGC CCCGA GCTGGCCGCCAGGGCACGGCAGGGC TTTCCCGCCTCCCTC AHA_0073 80145 - 81047 + | regulatory protein, LysR:LysR, substrate-binding AHA_0074 81312 - 83147 + | vitamin B12 transporter BtuB TERM 87 83210 - 83182 - f 85 -4.3 -5.18995 | opp_overlap 83185 83186, overlap 83183 83186 AAGAGAAGATAAAAA GCGAGGCCCCGCC ATT GGTGGGGCCTTTT CTATTGGCGGTCGGC TERM 88 83206 - 83186 - f 81 -13.9 -2.92461 | opp_overlap 83185 83186, overlap 83183 83182 GAAGATAAAAAGCGA GGCCCCGCC ATT GGTGGGGCC TTTTCTATTGGCGGT TERM 89 83186 - 83206 + F 100 -16.1 -4.66938 | opp_overlap 83186 83183 83182, overlap 83185 GAAGATAAAAAGCGA GGCCCCGCC ATT GGTGGGGCC TTTTCTATTGGCGGT TERM 90 83893 - 83923 + G 71 -9.6 -3.72576 | overlap 83894 ATTCCGGCAGTGCGG TCGCCAAGCGGGTG GCT CACCTGCTGGCCGG TTTGGTAACGACACC TERM 91 84036 - 84003 - g 79 -10.9 -3.95073 | opp_overlap 84009, overlap 84004 GCCCAGACCCAGAAA CTGACAGCCCCCTTG CAAG CTTGGGGGCTGTCAT CACTCGAAGAGGTCA TERM 92 84035 - 84004 - g 77 -14.4 -2.96722 | opp_overlap 84009, overlap 84003 CCCAGACCCAGAAAC TGACAGCCCCCTTG CAAG CTTGGGGGCTGTCA TCACTCGAAGAGGTC murI 83265 - 84059 + | glutamate racemase AHA_0076 84569 - 84078 - | RNA-binding protein TERM 93 84622 - 84603 - H 81 -2.2 -5.41359 | gap 1 AATGAAAGCAAAAAA GGTGCAACA CTC TATT-CACC TCCATGGTAACCAGC TERM 94 84955 - 84942 - H 75 -3.8 -4.86731 | opp_overlap 84942, overlap 84943 GGCGCCGAAAGAAAA GCGA AAACAA TCGC TTGACTTTCGAAGTG TERM 95 85122 - 85108 - H 71 -8.6 -3.80114 | GATGAAGTGACCAAA GCAACT TTT AGTTGC AGCAGTTAATTCAGC TERM 96 86932 - 86909 - H 83 -9.6 -4.21194 | CGCCATTACCCAAAA TCTGCACTGC TAAC GCAGCGCAAA GATGATTTTGGGTCC TERM 97 87044 - 87072 + H 87 -8.3 -4.65747 | overlap 87071 TTGCTAACAAGAATG CAGATATAAGCAT TAC GTGTTTATGTCTG TTTTCTTCGGCCTTG TERM 98 87200 - 87186 - H 74 -7.2 -4.07687 | opp_overlap 87176 87186 87180 ACTTCTTGGCGAAAA CCAAAT TTT ATTTGG TCCTTGTTGTACGAC TERM 99 87248 - 87218 - H 73 -10.4 -3.40403 | opp_overlap 87224, overlap 87221 CTTGTTGTACGACAA CAAGCTGTGCCGGT TTC ACCGACACTTCTTG GGGTTGTATGGTTAA TERM 100 87224 - 87242 + H 70 -8.8 -3.70081 | opp_overlap 87221 87218 GTACGACAACAAGCT GTGCCGGT TTC ACCGACAC TTCTTGGGGTTGTAT TERM 101 87746 - 87734 - H 84 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 102 90575 - 90592 + H 100 -12.7 -5.37043 | opp_overlap 90575 CCATTAAATATCAAA GCCTCCC AATC GGGAGGC TTTTTTGTATCCGCT TERM 103 90592 - 90575 - H 93 -12.7 -4.02719 | opp_overlap 90575 CCATTAAATATCAAA GCCTCCC AATC GGGAGGC TTTTTTGTATCCGCT codA 90960 - 92225 + | cytosine deaminase TERM 104 92335 - 92366 + G 76 -10 -3.83026 | gap 1, overlap 92336 CCTGGTTATATGTTG CCGCCGGCGGG-GCC ATC GGCGCCTGCCTGCGC TTTGGTATCGCCGAA TERM 105 92336 - 92365 + G 74 -13.5 -2.89602 | gap 1, overlap 92335 CTGGTTATATGTTGC CGCCGGCGGG-GCC ATC GGCGCCTGCCTGCG CTTTGGTATCGCCGA crcB 92274 - 92690 + | CrcB protein AHA_0084 92756 - 93508 + | ubiquinone/menaquinone biosynthesis methyltransferase UbiE AHA_0085 93517 - 94125 + | hypothetical protein ubiB 94125 - 95765 + | putative ubiquinone biosynthesis protein UbiB tatA 95806 - 96054 + | twin argininte translocase protein A tatB 96058 - 96501 + | twin arginine-targeting protein translocase TatB tatC 96498 - 97253 + | twin arginine-targeting protein translocase TatC TERM 106 97239 - 97266 + F 93 -12 -4.25283 | opp_overlap 97235 97242, overlap 97242 AAGCAGGAACAGACT GAAGAGGGGAGC TAAG GCTCCCTTCCTC TTTTCATGCCCCCGT TERM 107 97242 - 97263 + F 72 -12.3 -2.83504 | opp_overlap 97242 97235, overlap 97239 CAGGAACAGACTGAA GAGGGGAGC TAAG GCTCCCTTC CTCTTTTCATGCCCC AHA_0090 97365 - 98150 + | deoxyribonuclease TatD hemB 98154 - 99173 + | delta-aminolevulinic acid dehydratase TERM 108 99192 - 99227 + F 86 -11.8 -3.83502 | opp_overlap 99200, overlap 99194 99197 99200 AGCTTGCCTGATGTC ACCCACAATGCCGGCC CCTG GGCCGGCATTGTCGTC TTTGGTATCCGGATC TERM 109 99194 - 99225 + F 100 -18.8 -3.5032 | opp_overlap 99200, overlap 99192 99197 99200 CTTGCCTGATGTCAC CCACAATGCCGGCC CCTG GGCCGGCATTGTCG TCTTTGGTATCCGGA TERM 110 99197 - 99222 + F 100 -19.1 -2.88959 | opp_overlap 99200, overlap 99194 99192 99200 GCCTGATGTCACCCA CAATGCCGGCC CCTG GGCCGGCATTG TCGTCTTTGGTATCC TERM 111 99200 - 99219 + F 95 -15 -3.57908 | opp_overlap 99200, overlap 99197 99194 99192 TGATGTCACCCACAA TGCCGGCC CCTG GGCCGGCA TTGTCGTCTTTGGTA TERM 112 99219 - 99200 - f 95 -15 -3.36327 | opp_overlap 99200 99197 99194 99192 TGATGTCACCCACAA TGCCGGCC CCTG GGCCGGCA TTGTCGTCTTTGGTA prlC 99396 - 101438 + | oligopeptidase A TERM 113 101498 - 101508 + F 73 -5.4 -4.62069 | TGCCACATAGTGGGA TCAC AGC GTGA TTTTTGAGATAAAAA TERM 114 101524 - 101539 + F 93 -10.4 -4.39002 | opp_overlap 101524, overlap 101538 TTTTTGAGATAAAAA GGGACC TTTT GGTCCC TTTTCTCAAGGCTTT TERM 115 101539 - 101524 - f 100 -10.4 -4.96848 | opp_overlap 101524 101538 TTTTTGAGATAAAAA GGGACC TTTT GGTCCC TTTTCTCAAGGCTTT AHA_0093 101643 - 104186 + | MorA AHA_0094 104281 - 105027 + | hypothetical protein TERM 116 105047 - 105085 + T 81 -12.5 -3.12142 | gap 1, opp_overlap 105049 105052, overlap 105045 105044 105054 GCACGCGAGGGATAA AAG-AAGAGGGCCAACCC GATG GGGTTGGCCCTCTTGCCA TCTATTGGCTGTCGG TERM 117 105082 - 105049 - T 100 -19.7 -4.42653 | opp_overlap 105047 105045 105044 105054, overlap 105052 ACGCGAGGGATAAAA GAAGAGGGCCAACCC GATG GGGTTGGCCCTCTTG CCATCTATTGGCTGT TERM 118 105079 - 105052 - T 100 -21.4 -4.33182 | opp_overlap 105047 105045 105044 105054, overlap 105049 CGAGGGATAAAAGAA GAGGGCCAACCC GATG GGGTTGGCCCTC TTGCCATCTATTGGC TERM 119 105054 - 105077 + T 100 -18.2 -3.09648 | opp_overlap 105052 105049, overlap 105047 105045 105044 AGGGATAAAAGAAGA GGGCCAACCC GATG GGGTTGGCCC TCTTGCCATCTATTG AHA_0095 106371 - 105382 - | hypothetical protein AHA_0096 108058 - 106568 - | guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase AHA_0097 109362 - 108073 - | ATP-dependent RNA helicase RhlB TERM 120 109417 - 109429 + H 77 -7.7 -4.258 | opp_overlap 109417 109416, overlap 109427 GATCATTTCAAATAG GGCAA CTA TTGCC TTTGTTGATACGTCA trx 109476 - 109802 + | thioredoxin TERM 121 109807 - 109842 + F 93 -10.6 -4.4009 | gap 1, opp_overlap 109811 109813, overlap 109813 GTAACCTGTAATAAT CAAAGAGGAGCGCATTG CAA TAATGCGCTCCT-TCTG TTTTATCACCTAGAC TERM 122 109839 - 109811 - f 91 -11.8 -4.07618 | opp_overlap 109807 109813, overlap 109813 CCTGTAATAATCAAA GAGGAGCGCATT GCAAT AATGCGCTCCTT CTGTTTTATCACCTA TERM 123 109837 - 109813 - f 95 -14.4 -3.62957 | opp_overlap 109807 109813, overlap 109811 TGTAATAATCAAAGA GGAGCGCATT GCAAT AATGCGCTCC TTCTGTTTTATCACC TERM 124 109813 - 109837 + F 100 -15.1 -4.02581 | opp_overlap 109813 109811, overlap 109807 TGTAATAATCAAAGA GGAGCGCATTG CAA TAATGCGCTCC TTCTGTTTTATCACC rho 110010 - 111275 + | transcription termination factor Rho TERM 125 111296 - 111313 + F 100 -10.5 -5.4433 | opp_overlap 111296 TCGAAAATCATCAAA CCGCGGC CCAG GTCGCGG TTTTTGTTTATCTAT TERM 126 111313 - 111296 - f 74 -8.3 -3.93057 | opp_overlap 111296 TCGAAAATCATCAAA CCGCGGC CCAG GTCGCGG TTTTTGTTTATCTAT AHA_0100 111589 - 112389 + | hypothetical protein AHA_0101 112420 - 113889 + | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TERM 127 114304 - 114270 - g 93 -14.2 -4.09685 | CGCCACCCCGGAAAA CGCCTATGCCGGCCAG GTG CTGGCCCGCATGCGCG AGCAGGGGGAGATCG TERM 128 114386 - 114398 + G 73 -3.3 -4.8048 | CGCTGATCCTGATGG CGGGT GGC ACCGG TTTTTCCTATGCCCG fre 114058 - 114756 + | FMN reductase TERM 129 114842 - 114868 + T 100 -15.2 -3.86015 | opp_overlap 114843 114847, overlap 114843 114847 GGCAGGCCAGAAACA ACAAACCCCAGC CTG GCTGGGGTTTGC TTTATGGGCGACCTG TERM 130 114843 - 114867 + T 100 -18.7 -2.91395 | opp_overlap 114843 114847, overlap 114842 114847 GCAGGCCAGAAACAA CAAACCCCAGC CTG GCTGGGGTTTG CTTTATGGGCGACCT TERM 131 114867 - 114843 - T 100 -18.7 -4.07877 | opp_overlap 114843 114842 114847, overlap 114847 GCAGGCCAGAAACAA CAAACCCCAGC CTG GCTGGGGTTTG CTTTATGGGCGACCT TERM 132 114847 - 114863 + T 100 -13.7 -4.13995 | opp_overlap 114843 114847, overlap 114843 114842 GCCAGAAACAACAAA CCCCAGC CTG GCTGGGG TTTGCTTTATGGGCG TERM 133 114863 - 114847 - T 100 -13.7 -4.63048 | opp_overlap 114847 114843 114842, overlap 114843 GCCAGAAACAACAAA CCCCAGC CTG GCTGGGG TTTGCTTTATGGGCG AHA_0103 115143 - 114886 - | hypothetical protein AHA_0104 115445 - 117862 + | extracellular lipase TERM 134 117877 - 117905 + T 100 -13.9 -4.09685 | opp_overlap 117882, overlap 117882 AGCCAGTCGGCCAAT AAAAACGCCGCCC TCG GGGTGGCGTTTTG TTTTCCAGCATCGCA TERM 135 117900 - 117882 - T 100 -11.6 -5.06414 | opp_overlap 117877 117882 GTCGGCCAATAAAAA CGCCGCCC TCG GGGTGGCG TTTTGTTTTCCAGCA TERM 136 117882 - 117900 + T 100 -13.8 -5.07652 | opp_overlap 117882, overlap 117877 GTCGGCCAATAAAAA CGCCGCCC TCG GGGTGGCG TTTTGTTTTCCAGCA AHA_0105 118835 - 118002 - | GlpG protein AHA_0106 119155 - 118832 - | thiosulfate sulfurtransferase GlpE AHA_0108 119226 - 119912 + | amino acid transporter LysE AHA_0107 120742 - 119909 - | AraC family transcriptional regulator TERM 137 120031 - 120003 - G 76 -8.8 -4.11216 | gap 1 GCCTGATCGGCAAAA CCGCTGGCCAGCG CCAC CTCC-GCCAGCGG CTCTCCCCGCTTGAG AHA_0109 121447 - 120746 - | high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF livG 122231 - 121458 - | leucine/isoleucine/valine transporter ATP-binding subunit livM 123499 - 122228 - | leucine/isoleucine/valine transporter permease subunit TERM 138 122959 - 122945 - G 75 -4.2 -4.74801 | GAAGCCGAGCAAAAA GCCG AAGGTGG CGGC CGTCAGCCCGGCGAT AHA_0112 124422 - 123496 - | high-affinity branched-chain amino acid transport system permeaseprotein LivH TERM 139 124255 - 124216 - G 71 -9.2 -3.75024 | CCCCAGCAGCAAGAA GGTGCTGTCGATGCCCAT CATC ATGAGCCCCGCCATCACC ATGAAAGCGACATAG TERM 140 124479 - 124454 - R 85 -8.9 -4.41348 | overlap 124457 TTGCCCGCAAAGAAA GGAGGGGTGAC TCAT GTCACCCCGAC CGGCAGATTATTTGA TERM 141 124476 - 124457 - R 87 -13.6 -3.18452 | overlap 124454 CCCGCAAAGAAAGGA GGGGTGAC TCAT GTCACCCC GACCGGCAGATTATT AHA_0113 125590 - 124487 - | Leu/Ile/Val-binding protein TERM 142 125365 - 125399 + g 72 -13.6 -2.75957 | overlap 125367 125375 CCACGGCCTGCTTGG GATCGCAGGCGTCGTC ATA GATGACGGCTTCGATC TGCTTGCCCTTGATG TERM 143 126752 - 126767 + G 74 -11.8 -3.46068 | overlap 126750 ATCCTGGCCCTCAAG CCGCGG CCGA CCGCGG TGTTTGCCTTCGACG AHA_0114 126044 - 127048 + | ribose operon repressor TERM 144 127104 - 127075 - T 95 -15.1 -3.74361 | opp_overlap 127080, overlap 127080 CATAGCCATCAACAA GAAAACCCCCTCG CCAG CGAGGGGGTTTTT GTTTGGCCCGCGTTT TERM 145 127080 - 127099 + T 100 -15 -5.27335 | opp_overlap 127075 127080 CCATCAACAAGAAAA CCCCCTCG CCAG CGAGGGGG TTTTTGTTTGGCCCG TERM 146 127099 - 127080 - T 100 -15 -4.92757 | opp_overlap 127080, overlap 127075 CCATCAACAAGAAAA CCCCCTCG CCAG CGAGGGGG TTTTTGTTTGGCCCG AHA_0115 128437 - 127118 - | maltose-6'-phosphate glucosidase AHA_0116 130026 - 128440 - | pts system maltose-specific eiicb component TERM 147 128708 - 128718 + g 78 -3.2 -5.0133 | opp_overlap 128710, overlap 128695 TGGCCGGCAATATCA TAGC CGC GCTG TTTTTTGGCGGCCTG TERM 148 129076 - 129115 + g 100 -16.5 -4.03586 | CCCCACCAGCATGGC GGTCAGGGTGGCCGG GATCAGCAGG CCGGCCACCTTGGCC TTGTTCTCTTTGGCG TERM 149 129552 - 129535 - G 74 -9.1 -3.89501 | overlap 129525 GAAGATGCCGAGAAA GACCGGC AGCT GCCGATC GAACAACCGGTTGTG TERM 150 129898 - 129883 - G 78 -3.2 -5.07053 | overlap 129870 129867 AACTATTTGAAAAAA CAGTCC CTGA GGATTG GCCAGCGTCTCTCCC TERM 151 129910 - 129925 + g 74 -4.7 -4.60889 | ATTGGCCAGCGTCTC TCCCA CGAACA TGGGA TTTTTCAGCATGATT TERM 152 130281 - 130263 - H 73 -5.9 -4.41348 | GCTGGTTGAAATAAA GGCGATC GAATT GGTCGCC ACCCGGGCTGGGTAA AHA_0117 130311 - 131018 + | GntR family transcriptional regulator TERM 153 131049 - 131068 + T 100 -15 -5.33405 | TGCTATGTATGCCAA CCCCCTCG CCAG CGAGGGGG TTTTTGTTTGATGGG AHA_0118 132625 - 131099 - | anaerobic nitric oxide reductase transcription regulator TERM 154 132960 - 132927 - g 70 -11.9 -3.17392 | gap 1, overlap 132930 132957 132958 CATCCGCGAAGGGAA GAACGTGCTGATCGAC ACC GTCGATCA-CAAGTTC AGCCGCGAGTTCGTG norV 132796 - 134283 + | anaerobic nitric oxide reductase flavorubredoxin norW 134280 - 135446 + | nitric oxide reductase AHA_0121 135498 - 135839 + | tellurite resistance protein TehB TERM 155 136083 - 136135 + G 71 -9 -3.7511 | gap 2, overlap 136079 136085 GCTCATGCTCTGGCT GC-TGGCGGCGGACAGCCTG-CTCTG GCT CGGCGTCGGGCTGGTGGCCGCCGTGC TTGTCTTCTGGCACC AHA_0122 135961 - 137178 + | iron-sulfur cluster-binding protein TERM 156 138394 - 138380 - g 74 -12.8 -3.33261 | GTTCAAGTTCGACAA CGGCCG TGG CGGCCG TGCCAAGTCGTGGGC AHA_0123 137466 - 138692 + | low affinity tryptophan permease TERM 157 138746 - 138729 - T 100 -14.1 -5.252 | opp_overlap 138729 GACTGCGACAAAAAA CGGCGCC TGAT GGCGCCG TTTTTTATGATGCAG TERM 158 138729 - 138746 + T 100 -14.1 -5.31275 | opp_overlap 138729 GACTGCGACAAAAAA CGGCGCC TGAT GGCGCCG TTTTTTATGATGCAG AHA_0124 139262 - 138783 - | phenylalanyl-tRNA synthetase beta subunit TERM 159 139313 - 139346 + r 83 -14.7 -2.71011 | gap 1 CCTACCAGCAGGTTG CCGTCATGCCCACC CCGGGAT GG-GGGCATGACGG TGGTTGCACGGGCAT AHA_0125 139780 - 139376 - | hypothetical protein AHA_0126 140006 - 140512 + | putative kinase TERM 160 140709 - 140695 - T 71 -4.2 -4.63218 | overlap 140696 GCCTTGTTAATAAAA TGCATG AAG CATGCC TTGGGATCGTATTGG TERM 161 141088 - 141101 + T 70 -3.1 -4.78984 | gap 1, opp_overlap 141074 ATCACTAAGTTGATA GC-GAG AAA CTCCGC TTCTTTTGTTTTTTT TERM 162 141334 - 141351 + T 100 -14.1 -4.8048 | opp_overlap 141334 ATTCAATTAAAAAAA CGGCGCC TTTC GGCGCCG TTTTTGATCTAGCCA TERM 163 141351 - 141334 - T 100 -14.1 -5.64006 | opp_overlap 141334 ATTCAATTAAAAAAA CGGCGCC TTTC GGCGCCG TTTTTGATCTAGCCA glyS 143447 - 141378 - | glycyl-tRNA synthetase, beta subunit glyQ 144380 - 143457 - | glycyl-tRNA synthetase subunit alpha TERM 164 144910 - 144886 - g 72 -2.6 -4.77036 | overlap 144887 144888 GTCGATCATCAAAAA TGCCCGCGCC TATCT GGCGCTGGGG GCTGAAGGCGTCGAC AHA_0129 144590 - 145171 + | DNA-3-methyladenine glycosylase I TERM 165 145212 - 145195 - T 90 -12.7 -3.84017 | opp_overlap 145195 CAAGGTCAAAGAGAA GGGAGGC TGAT GCCTCCC TTTTGCATATCGGCA TERM 166 145195 - 145212 + T 100 -12.7 -4.2349 | opp_overlap 145195 CAAGGTCAAAGAGAA GGGAGGC TGAT GCCTCCC TTTTGCATATCGGCA AHA_0130 147284 - 145248 - | methyl-accepting chemotaxis protein TERM 167 147655 - 147684 + G 81 -15.7 -3.06696 | gap 1 GGGGCGCGCTGGCTG GCGCGGCCACTGGC GCC GCC-GTGGGCGCGC TCTCTTCCAGCAAGG AHA_0131 147537 - 148193 + | putative outer membrane lipoprotein TERM 168 148219 - 148244 + T 100 -16.1 -4.71828 | opp_overlap 148220, overlap 148220 TCGCAGACATGAAAA AGGCCCCGCCA GCGA TGGCGGGGCCC TTTTATTGGTGCCGT TERM 169 148243 - 148220 - T 100 -19.6 -4.84527 | opp_overlap 148220 148219 CGCAGACATGAAAAA GGCCCCGCCA GCGA TGGCGGGGCC CTTTTATTGGTGCCG TERM 170 148220 - 148243 + T 100 -19.6 -3.42374 | opp_overlap 148220, overlap 148219 CGCAGACATGAAAAA GGCCCCGCCA GCGA TGGCGGGGCC CTTTTATTGGTGCCG TERM 171 148252 - 148275 + T 85 -11 -3.9461 | CGGGGCCCTTTTATT GGTGCCGTTG CGAG CAATGGCGCC TTGTTCTTGGACCCC AHA_0132 148808 - 148461 - | endoribonuclease L-PSP AHA_0133 149078 - 148830 - | hypothetical protein TERM 172 149231 - 149217 - H 77 -3.6 -5.1244 | TGAGTAATATAAAAA TTGAAC CAT ATTCAA CAAGGAGGTGTGAAT AHA_0134 149247 - 149438 + | hypothetical protein TERM 173 149456 - 149488 + T 100 -20.8 -3.85698 | opp_overlap 149456 149463, overlap 149463 CCAATACTTTCACAA CGACAAAGGCGGAT ATCTC ATCCGCCTTTGTCG TTTCTGGCCGCAGCA TERM 174 149488 - 149456 - T 100 -21.5 -3.33315 | opp_overlap 149456 149463, overlap 149463 CCAATACTTTCACAA CGACAAAGGCGGATA TCT CATCCGCCTTTGTCG TTTCTGGCCGCAGCA TERM 175 149463 - 149481 + T 86 -10.3 -4.17701 | opp_overlap 149463 149456, overlap 149456 TTTCACAACGACAAA GGCGGAT ATCTC ATCCGCC TTTGTCGTTTCTGGC TERM 176 149481 - 149463 - T 88 -11 -4.1021 | opp_overlap 149456 149463, overlap 149456 TTTCACAACGACAAA GGCGGATA TCT CATCCGCC TTTGTCGTTTCTGGC AHA_0135 150749 - 149511 - | ABC-type sugar transport system, periplasmic component TERM 177 149699 - 149689 - G 71 -5.4 -4.46212 | TCCGCCAGCAGAAAA TCCT GAT AGGA GCGGATGGCGCAGCG TERM 178 150093 - 150078 - G 70 -10.4 -3.54424 | GCGCAGCTGCTGAAA GCGGGT CAGC ACCCGC ACCATGTCGGGGCCG AHA_0136 152169 - 150754 - | signal transduction histidine kinase AHA_0137 152985 - 152251 - | GltR TERM 179 152608 - 152626 + g 70 -11.6 -3.14564 | CGGCTGGCGGAATTC GGCGCGGC GCA GCAGCGCC TTGATGCGGGCCTGC TERM 180 152929 - 152955 + g 70 -8 -4.04927 | overlap 152952 GAGCAGCTCGCGGAT CTCTTGGTCGTC GTC GACGATCAGCAG TTGTTTGCTCGTTGA TERM 181 153123 - 153102 - R 100 -15.1 -5.63517 | CGTGCAAATAAAAAA GGCCGACCC AAAC GGGCCGGCC AATACGCAGATTCCG fadA 154461 - 153298 - | 3-ketoacyl-CoA thiolase fadB 156630 - 154483 - | multifunctional fatty acid oxidation complex subunit alpha TERM 182 156816 - 156793 - R 100 -14 -4.5774 | opp_overlap 156797, overlap 156797 GATTAACAACCAAAA TAAAGGCGTC TGAT GACGCCTTTA TTAACCTTGTGTGGC TERM 183 156812 - 156797 - R 100 -10.4 -4.81843 | opp_overlap 156797, overlap 156793 AACAACCAAAATAAA GGCGTC TGAT GACGCC TTTATTAACCTTGTG TERM 184 156797 - 156812 + r 86 -10.4 -4.21989 | opp_overlap 156797 156793 AACAACCAAAATAAA GGCGTC TGAT GACGCC TTTATTAACCTTGTG AHA_0140 158770 - 156833 - | acetoacetyl-CoA synthetase TERM 185 159205 - 159220 + G 74 -5.4 -4.56775 | opp_overlap 159191 AGCCGGTGTTGCTGT TCTACC GGCC GGTGGA TTTTTGGCACAAGGT pepQ 158961 - 160283 + | proline dipeptidase TERM 186 160446 - 160415 - g 76 -6.6 -4.52857 | gap 1, opp_overlap 160429 ATCGGCGATATAAAA CAGCAAC-ATCCCGG GGC CCGGCATCACTGCTG GGCCTTTGTCGCCGG TERM 187 160429 - 160450 + G 86 -13.7 -3.86897 | opp_overlap 160415 ACAGCAACATCCCGG GGCCCGGCA TCAC TGCTGGGCC TTTGTCGCCGGTGCC AHA_0142 160283 - 160900 + | hypothetical protein trkH 160937 - 162394 + | Trk system potassium uptake protein TrkH AHA_0144 162333 - 162926 + | protoporphyrinogen oxidase TERM 188 162952 - 162969 + T 80 -4.7 -5.10461 | TCCTGAATGGCCTGA GCGCTGC GGTT GCGGGGC TTTTTGTTGGATAAA TERM 189 163153 - 163140 - T 75 -3.8 -4.86731 | opp_overlap 163140, overlap 163141 GGCGCCGAAAGAAAA GCGA AAACAA TCGC TTGACTTTCGAAGTG TERM 190 163320 - 163306 - T 71 -8.6 -3.80114 | GATGAAGTGACCAAA GCAACT TTT AGTTGC AGCAGTTAATTCAGC TERM 191 165248 - 165211 - T 77 -11.5 -3.61398 | opp_overlap 165216, overlap 165214 TCTTCTTGCTAACAA GAATGCAGAGTTAAGAA CTGA TTCTTAACTCTGTTTTC TTCAGCCTTGTGCTG TERM 192 165245 - 165214 - T 71 -7.4 -3.9461 | opp_overlap 165216, overlap 165211 TCTTGCTAACAAGAA TGCAGAGTTAAGAA CTGA TTCTTAACTCTGTT TTCTTCAGCCTTGTG TERM 193 165216 - 165243 + T 100 -14.4 -4.65747 | opp_overlap 165214 165211 TTGCTAACAAGAATG CAGAGTTAAGAA CTGA TTCTTAACTCTG TTTTCTTCAGCCTTG TERM 194 165371 - 165357 - T 74 -7.2 -4.07687 | opp_overlap 165347 165351 165357 ACTTCTTGGCGAAAA CCAAAT TTT ATTTGG TCCTTGTTGTACAGC TERM 195 165915 - 165903 - T 84 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 196 168582 - 168563 - T 100 -15 -4.46675 | opp_overlap 168563 ACCCAATACAAGAAA CCCCGCTC AGAT GAGCGGGG TTTTTTATTATCTAA TERM 197 168563 - 168582 + T 100 -15 -5.60689 | opp_overlap 168563 ACCCAATACAAGAAA CCCCGCTC AGAT GAGCGGGG TTTTTTATTATCTAA TERM 198 168600 - 168627 + T 100 -14.4 -4.19123 | opp_overlap 168600, overlap 168623 TTTTATTATCTAAAA TCAGCGATTTAT GGTC ATAAATCGCTGA TTTCTCTGCTTTATG TERM 199 168627 - 168600 - T 100 -14.4 -4.21194 | opp_overlap 168600 168623 TTTTATTATCTAAAA TCAGCGATTTAT GGTC ATAAATCGCTGA TTTCTCTGCTTTATG AHA_0149 171214 - 168638 - | acyl-CoA synthetase AHA_0150 171478 - 171287 - | hypothetical protein AHA_0152 171648 - 172520 + | hypothetical protein ilvY 173402 - 172509 - | DNA-binding transcriptional regulator IlvY ilvC 173624 - 175105 + | ketol-acid reductoisomerase TERM 200 175227 - 175207 - T 100 -18.3 -5.24129 | opp_overlap 175207 CCCGGCCACAAAAAA GCCCCGCTC ATC GAGCGGGGC TTTTGCATTCAGAAA TERM 201 175207 - 175227 + T 100 -18.3 -4.27316 | opp_overlap 175207 CCCGGCCACAAAAAA GCCCCGCTC ATC GAGCGGGGC TTTTGCATTCAGAAA pgi 176903 - 175254 - | glucose-6-phosphate isomerase AHA_0155 177320 - 177508 + | phage lysis protein Y, holin, putative TERM 202 177559 - 177538 - T 83 -7.2 -4.65933 | opp_overlap 177539, overlap 177539 CATGCTGAAAACAAA GTCCGGCC CAGGGT GGCCGGAT TTTTTATGCCCGTCA TERM 203 177558 - 177539 - T 73 -10.7 -3.38836 | opp_overlap 177539, overlap 177538 ATGCTGAAAACAAAG TCCGGCC CAGGGT GGCCGGA TTTTTTATGCCCGTC TERM 204 177539 - 177558 + T 100 -10.7 -5.252 | opp_overlap 177539 177538 ATGCTGAAAACAAAG TCCGGCC CAGGGT GGCCGGA TTTTTTATGCCCGTC TERM 205 177618 - 177588 - T 95 -14.9 -3.53224 | gap 1, opp_overlap 177591 177594, overlap 177591 177594 CAGCGGGGTCGGAAA CGACAATGCCAGCC CGGA GGCTGGCATTGT-G TCATTCAGGAAAAGG TERM 206 177591 - 177616 + T 95 -17.7 -2.90075 | opp_overlap 177588 177591 177594, overlap 177594 CGGGGTCGGAAACGA CAATGCCAGCC CGGA GGCTGGCATTG TGTCATTCAGGAAAA TERM 207 177616 - 177591 - T 95 -17.7 -2.90496 | opp_overlap 177591 177594, overlap 177588 177594 CGGGGTCGGAAACGA CAATGCCAGCC CGGA GGCTGGCATTG TGTCATTCAGGAAAA TERM 208 177594 - 177613 + T 89 -13.6 -3.59946 | opp_overlap 177591 177588 177594, overlap 177591 GGTCGGAAACGACAA TGCCAGCC CGGA GGCTGGCA TTGTGTCATTCAGGA TERM 209 177613 - 177594 - T 89 -13.6 -3.60151 | opp_overlap 177594 177591, overlap 177591 177588 GGTCGGAAACGACAA TGCCAGCC CGGA GGCTGGCA TTGTGTCATTCAGGA AHA_0156 178471 - 177635 - | small-conductance mechanosensitive channel TERM 210 178603 - 178580 - R 100 -8.8 -5.24129 | opp_overlap 178581 178583, overlap 178583 TTGTGCCACAAAAAA CAAGGGAGGC CAAG GCCTCCCTCT TTACTGCAACCCGTC TERM 211 178581 - 178602 + r 74 -10.1 -3.72695 | opp_overlap 178580 178583, overlap 178583 TGTGCCACAAAAAAC AAGGGAGGC CAAG GCCTCCCTC TTTACTGCAACCCGT TERM 212 178583 - 178600 + r 84 -12.7 -3.44848 | opp_overlap 178583 178580, overlap 178581 TGCCACAAAAAACAA GGGAGGC CAAG GCCTCCC TCTTTACTGCAACCC TERM 213 178600 - 178583 - R 100 -12.7 -4.72201 | opp_overlap 178581 178583, overlap 178580 TGCCACAAAAAACAA GGGAGGC CAAG GCCTCCC TCTTTACTGCAACCC slmA 179254 - 178658 - | nucleoid occlusion protein AHA_0158 179782 - 179324 - | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 214 179767 - 179788 + g 72 -2.3 -4.7373 | overlap 179770 CCAGAATCTTCAGTT CAATTTGTG TTGT CATAAATCG TTTTTAATGGAGTGG coaBC 181025 - 179823 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 215 181116 - 181129 + H 79 -3.1 -5.28755 | gap 1, overlap 181126 ATGGGGGACTTGTGG TCG-GG CTC CCGCGA TTTTTTGCTATGTTT radC 181173 - 181847 + | DNA repair protein RadC rpmB 181984 - 182220 + | ribosomal protein L28 TERM 216 182355 - 182332 - g 78 -3.2 -5.02074 | gap 1, opp_overlap 182332 182334, overlap 182333 182334 182336 CCATGCCCGAAAAAA TGGAGATCAAA AAG TTTGATC-CCG TTGTTCGTCAGCATG rpmG 182232 - 182399 + | 50S ribosomal protein L33 TERM 217 182418 - 182381 - f 73 -10.7 -3.36327 | overlap 182392 GCATGTGATCTACAA GGAAGGCAAAATCAAGT AATT ACTTGATGCTGCATTCC CAAAAACCCGGCCTA TERM 218 182407 - 182392 - f 71 -6.2 -4.32804 | overlap 182381 ACAAGGAAGGCAAAA TCAAGT AATT ACTTGA TGCTGCATTCCCAAA TERM 219 182441 - 182425 - f 95 -10.8 -4.59773 | opp_overlap 182425 CTGCATTCCCAAAAA CCCGGC CTAGT GCCGGG TTTTTTTATGGCCGA TERM 220 182425 - 182441 + F 100 -10.8 -5.60993 | opp_overlap 182425 CTGCATTCCCAAAAA CCCGGC CTAGT GCCGGG TTTTTTTATGGCCGA AHA_0163 182493 - 182948 + | hypothetical protein TERM 221 183695 - 183711 + G 72 -7.2 -4.18018 | overlap 183692 CTGCAGGTGTACGGG CGGGGC GGCCA GCCCTG TTTTCACTGCCACAC mutM 182978 - 183790 + | formamidopyrimidine-DNA glycosylase TERM 222 184654 - 184641 - g 86 -8.1 -4.58786 | opp_overlap 184642 184643, overlap 184643 AGCAAGAAGAAGAAA GCCTG CCTG CAGGC GGATTATGACGAGCT AHA_0165 183969 - 184850 + | hypothetical protein TERM 223 184867 - 184903 + T 95 -15.4 -3.46202 | gap 1, opp_overlap 184874, overlap 184874 GTGCACAGGCCCCTG CAGC-AAACAGGCTACC CTCG GGTAGCCTGTTTCGTTG TTACTTGGTCTGTTT TERM 224 184895 - 184874 - T 95 -14.5 -3.72576 | opp_overlap 184867 184874 GGCCCCTGCAGCAAA CAGGCTACC CTCG GGTAGCCTG TTTCGTTGTTACTTG TERM 225 184874 - 184895 + T 100 -14.5 -4.11412 | opp_overlap 184874, overlap 184867 GGCCCCTGCAGCAAA CAGGCTACC CTCG GGTAGCCTG TTTCGTTGTTACTTG coaD 185386 - 184904 - | phosphopantetheine adenylyltransferase TERM 226 185449 - 185486 + H 95 -14.1 -3.57263 | overlap 185451 185451 TTGGGGGATTGGCGC GACCGCCTTGGGGCG AGTTTTGG CGCCCCAAGGCCGGC TTTGCCGATCCAAAT TERM 227 185451 - 185485 + H 83 -15.1 -2.74144 | gap 1, overlap 185451 185449 GGGGGATTGGCGCGA CC-GCCTTGGGGCG AGTTTTGG CGCCCCAAGGCCGG CTTTGCCGATCCAAA TERM 228 185827 - 185811 - g 79 -13.7 -3.43218 | opp_overlap 185822, overlap 185805 GACAAGGAACAGCAA CGCGCCT TGC AGGCGCG CATCAAGGCCGCCGC TERM 229 186607 - 186632 + G 74 -12.5 -3.29511 | gap 1, opp_overlap 186601 186598 CCAAGACCATGGCGG CGGCGATCGCCC GCT GGGCGC-CGCCG TTCTGGCGCACTGAA AHA_0167 185610 - 186653 + | heptosyltransferase TERM 230 186703 - 186670 - T 95 -14.7 -3.70417 | gap 1, opp_overlap 186674 186676 186678, overlap 186671 186674 ACCAGATGATGTAAA TGC-AGACAGGGCCCT TGA AGGGCCCTGTCTCGTA TGAGGGGAAGTGCTG TERM 231 186700 - 186671 - T 91 -17.3 -2.81768 | gap 1, opp_overlap 186674 186676 186678, overlap 186670 186674 CCAGATGATGTAAAT GCAGACAGGGCCCT TGA AGGGCCCTGTCT-C GTATGAGGGGAAGTG TERM 232 186674 - 186698 + T 100 -20.1 -2.62184 | opp_overlap 186671 186670 186674, overlap 186676 186678 GATGATGTAAATGCA GACAGGGCCCT TGA AGGGCCCTGTC TCGTATGAGGGGAAG TERM 233 186698 - 186674 - T 100 -20.1 -2.66748 | opp_overlap 186674 186676 186678, overlap 186671 186670 GATGATGTAAATGCA GACAGGGCCCT TGA AGGGCCCTGTC TCGTATGAGGGGAAG TERM 234 186676 - 186696 + T 90 -16.9 -2.85351 | opp_overlap 186674 186671 186670, overlap 186674 186678 TGATGTAAATGCAGA CAGGGCCCT TGA AGGGCCCTG TCTCGTATGAGGGGA TERM 235 186678 - 186694 + T 81 -13.7 -2.97747 | opp_overlap 186674 186671 186670, overlap 186676 186674 ATGTAAATGCAGACA GGGCCCT TGA AGGGCCC TGTCTCGTATGAGGG AHA_0168 187511 - 186723 - | glycosyl transferase, group 2 family protein rfaF 187753 - 188868 + | lipopolysaccharide heptosyltransferase II waaA 188870 - 190135 + | 3-deoxy-D-manno-octulosonic-acid transferase TERM 236 190179 - 190161 - T 100 -16 -5.72616 | opp_overlap 190161 ACGGATATAAAAAAA CGGAGCGC ATG GCGCTCCG TTTTTTTATGTCGTG TERM 237 190161 - 190179 + T 100 -16 -5.74122 | opp_overlap 190161 ACGGATATAAAAAAA CGGAGCGC ATG GCGCTCCG TTTTTTTATGTCGTG ulaA 191462 - 190206 - | ascorbate-specific PTS system enzyme IIC AHA_0172 191846 - 191523 - | PTS sysytem, mannitol-specific enzyme II, B component AHA_0173 192286 - 191843 - | ascorbate-specific phosphotransferase enzyme IIA component TERM 238 191883 - 191905 + g 72 -13.4 -2.69348 | overlap 191882 191879 ATGTCGTCTTTGCTG GTGGCCGCCA TGA TGGCCGCCAC GTCTTCTTCATTCAT TERM 239 192387 - 192363 - H 89 -13.7 -3.57263 | opp_overlap 192357 192375 192376, overlap 192378 192380 AGCCTGATCGCGAAA GTTAGCGCTAC CAG ATAGCGCTAAC ATCGATCTGTGATAG TERM 240 192375 - 192410 + H 75 -6.9 -4.41348 | opp_overlap 192363 192378 192380, overlap 192357 192376 AAAGTTAGCGCTACC AGATAGCGCTAACAT CGATCT GTGATAGCGCTATCA TTTCTTTCACGGAAG TERM 241 192376 - 192409 + H 71 -10.4 -3.24488 | opp_overlap 192363 192378 192380, overlap 192357 192375 AAGTTAGCGCTACCA GATAGCGCTAACAT CGATCT GTGATAGCGCTATC ATTTCTTTCACGGAA AHA_0174 192539 - 193561 + | HTH-type transcriptional regulator GntR TERM 242 194059 - 194088 + G 70 -12.1 -3.14344 | gap 1, overlap 194024 194050 CTGGTGACCGGCGCC GCCGGCGG-GGTGG GTT CCACCGCCGTCGCC TTGCTGGCCGCGCTG TERM 243 194428 - 194465 + G 84 -8.3 -4.41348 | gap 1, overlap 194439 CTGGCGCGCCGCCAA CTGGCGTGGCAGCGACTG GCG CGGGATCTGCC-CGCCAG TTTCTTTGCGCAGGC AHA_0175 193591 - 194571 + | quinone oxidoreductase YhdH/YhfP family AHA_0176 194616 - 194765 + | hypothetical protein TERM 244 194808 - 194786 - f 100 -20.6 -3.10344 | opp_overlap 194786, overlap 194770 194769 194788 CGCGTATTGAATACA CAGGCGGGCC TCG GGCCCGCCTG TTTTTTTGGGCGGCT TERM 245 194786 - 194808 + F 100 -20.6 -5.40474 | opp_overlap 194770 194769 194786 194788 CGCGTATTGAATACA CAGGCGGGCC TCG GGCCCGCCTG TTTTTTTGGGCGGCT TERM 246 194806 - 194788 - f 100 -17.4 -3.11072 | opp_overlap 194786, overlap 194769 194786 CGTATTGAATACACA GGCGGGCC TCG GGCCCGCC TGTTTTTTTGGGCGG AHA_0177 194898 - 195239 + | hypothetical protein AHA_0178 195471 - 195253 - | hypothetical protein TERM 247 195517 - 195480 - R 100 -16.4 -4.11216 | gap 1, opp_overlap 195471 195470, overlap 195483 TTTTCATTTCTAAAA CAGCGAGCGGGCCAGGA TGATC TCGTGGCCCGCTCG-TG GTGACGGGAGATTAC TERM 248 195515 - 195483 - R 100 -19.2 -2.79004 | opp_overlap 195471 195470, overlap 195480 TCATTTCTAAAACAG CGAGCGGGCCAGGA TGATC TCGTGGCCCGCTCG TGGTGACGGGAGATT fliL-1 195963 - 195529 - | flagellar basal body-associated protein FliL AHA_0180 196109 - 196645 + | chorismate--pyruvate lyase ubiA 196642 - 197505 + | 4-hydroxybenzoate octaprenyltransferase TERM 249 197514 - 197555 + T 100 -19.1 -3.48395 | gap 1, opp_overlap 197527, overlap 197527 TCTGTGAGTCAGCCC CATCATGAAAAAAGGCCGCA TGT TGCGGCCTTTTTT-ATGGTG TTGTGTGAGCGGGGT TERM 250 197527 - 197543 + T 100 -13.7 -5.36965 | opp_overlap 197527, overlap 197514 CCCATCATGAAAAAA GGCCGCA TGT TGCGGCC TTTTTTATGGTGTTG TERM 251 197543 - 197527 - T 100 -13.7 -5.1861 | opp_overlap 197514 197527 CCCATCATGAAAAAA GGCCGCA TGT TGCGGCC TTTTTTATGGTGTTG plsB 199993 - 197570 - | glycerol-3-phosphate acyltransferase TERM 252 198079 - 198103 + g 75 -13.5 -3.05384 | opp_overlap 198066 198076 AACGGGCAACGATCT CGCTGCGGGAG ATC CCCTCGCAGCG TTCGATCAGGGCCGC lexA 200198 - 200821 + | LexA repressor TERM 253 200831 - 200860 + F 100 -18.7 -4.11838 | opp_overlap 200836, overlap 200832 200836 ATGTAATCCCTGCCA TGAAACGGCCTCC TGCG GGAGGCCGTTTCG TTTCTGTACTCCTTT TERM 254 200832 - 200859 + F 100 -20 -3.06018 | opp_overlap 200836, overlap 200831 200836 TGTAATCCCTGCCAT GAAACGGCCTCC TGCG GGAGGCCGTTTC GTTTCTGTACTCCTT TERM 255 200836 - 200855 + F 100 -15 -4.18644 | opp_overlap 200836, overlap 200832 200831 ATCCCTGCCATGAAA CGGCCTCC TGCG GGAGGCCG TTTCGTTTCTGTACT TERM 256 200855 - 200836 - f 95 -15 -3.72695 | opp_overlap 200836 200832 200831 ATCCCTGCCATGAAA CGGCCTCC TGCG GGAGGCCG TTTCGTTTCTGTACT TERM 257 201108 - 201061 - f 72 -3.5 -4.68593 | gap 3, overlap 201066 GGCAGCAGGGAAAAA CAACAGCCTC-GTG-C-GGTGTGC AGC GCACACCTGGCAAAGAGGCGCTTG CGGGATAGAAGGGAG AHA_0184 201261 - 201548 + | hypothetical protein TERM 258 201567 - 201590 + T 100 -18.2 -4.17316 | TCACTGCTTCTTGTG CAGCCCCACC TTAT GGTGGGGCTG TTGTTTTGGGCGGGT AHA_0185 201671 - 201552 - | hypothetical protein TERM 259 201608 - 201626 + g 73 -13.1 -3.14146 | GTTTTGGGCGGGTTC GGGCCGG CATCA CCGGCCC TTGCGTCATCTTCTG AHA_0186 201710 - 202396 + | SCO1/SenC family protein TERM 260 202449 - 202464 + G 72 -11.8 -3.38046 | overlap 202447 TGGTGGCGGGACGGG CGGCGC CACC GCGCCG TGTTTGCCCTGGCCC TERM 261 203675 - 203690 + G 70 -11.8 -3.14132 | TGTGGCGGCCTTGTG GGCCGC GATG GCGGCC TTGATGGCGGGGCGG AHA_0187 202386 - 203804 + | DNA-damage-inducible protein F AHA_0188 204339 - 203833 - | RNA methyltransferase TERM 262 204350 - 204328 - G 78 -10.5 -4.08767 | overlap 204341 CTGATGGGGCGAAAA GGGCGCCAG CATAC CCAGCGCCC GTGCGGATGAAAAGA cpxA 205727 - 204372 - | sensor histidine kinase CpxA cpxR 206419 - 205724 - | transcriptional regulatory protein CpxR fieF 206506 - 207417 + | cation-efflux pump FieF cysE 207426 - 208205 + | serine acetyltransferase TERM 263 208373 - 208416 + G 81 -16.7 -2.8214 | gap 1, overlap 208371 208370 GCTGGTGGGCGCGGC GCGGCGCCAGGCGCTGGCCC TGTAC GGGGCAGCGC-TGGCACTGC TGATCTTCTCCTGCT AHA_0193 208227 - 209507 + | hypothetical protein AHA_0194 209553 - 209951 + | transcriptional regulator TERM 264 209979 - 210001 + T 100 -20.6 -4.46112 | opp_overlap 209979 CGCGAGAATTGAAAA CGGGCCGCTC CAT GAGCGGCCCG TTTGTTTGGGTACGG TERM 265 210001 - 209979 - T 100 -20.6 -4.3208 | opp_overlap 209979 CGCGAGAATTGAAAA CGGGCCGCTC CAT GAGCGGCCCG TTTGTTTGGGTACGG AHA_0195 210675 - 210025 - | isoprenoid biosynthesis protein TERM 266 212857 - 212842 - g 73 -3.2 -4.77036 | gap 1, opp_overlap 212856 GCCGATCATCAAAAA GAC-CCC CAA GGGCGCC CCATCCACTGCGGAA polA 211076 - 213829 + | DNA polymerase I TERM 267 213860 - 213891 + T 100 -13.8 -3.96148 | gap 1, opp_overlap 213862 213864, overlap 213863 213864 ATGTAGCTATATAAG AAGAGAAGCCCGGCA TGA TGCCGGGCTTC-CTG TTTGTGGTGGCGGGG TERM 268 213889 - 213862 - T 100 -16.4 -3.8969 | gap 1, opp_overlap 213860 213863 213864, overlap 213864 GTAGCTATATAAGAA GAGAAGCCCGGCA TGA TGCCGGGCTTC-C TGTTTGTGGTGGCGG TERM 269 213863 - 213889 + T 100 -16.6 -3.57406 | opp_overlap 213862 213864, overlap 213860 213864 TAGCTATATAAGAAG AGAAGCCCGGCA TGA TGCCGGGCTTCC TGTTTGTGGTGGCGG TERM 270 213864 - 213888 + T 100 -20.1 -2.74122 | opp_overlap 213862 213864, overlap 213863 213860 AGCTATATAAGAAGA GAAGCCCGGCA TGA TGCCGGGCTTC CTGTTTGTGGTGGCG TERM 271 213888 - 213864 - T 100 -20.1 -3.53276 | opp_overlap 213864 213863 213860, overlap 213862 AGCTATATAAGAAGA GAAGCCCGGCA TGA TGCCGGGCTTC CTGTTTGTGGTGGCG AHA_0197 214448 - 213909 - | carbonic anhydrase TERM 272 214070 - 214032 - G 83 -7.2 -4.62441 | opp_overlap 214033, overlap 214028 214034 GCCCATATAAAGAAA GCCGGCCTCGAGCCGC TTGCCTG GCGGCACCAGGCTGCC CGCCCCGATCATCAC TERM 273 214400 - 214415 + g 72 -3.9 -4.61873 | overlap 214401 CCACATATACCCGTT TGCCC AACTGC GGGCG TTTTCCTTTGTAAGG TERM 274 214796 - 214812 + H 74 -6.7 -4.26589 | opp_overlap 214789, overlap 214809 TCACAGCATCGAGCA TCAAAAA CAA TTTTTGA TTTTCAATGTCTGAT TERM 275 216867 - 216853 - H 74 -7.2 -4.07687 | opp_overlap 216843 216853 216847 ACTTCTTGGCGAAAA CCAAAT TTT ATTTGG TCCTTGTTGTACGAC TERM 276 216915 - 216885 - H 73 -10.4 -3.40403 | opp_overlap 216891, overlap 216888 CTTGTTGTACGACAA CAAGCTGCGTCGGT TTC ACCGACACTTCTTG GGGTTGTATGGTTAA TERM 277 216891 - 216909 + H 70 -8.8 -3.70081 | opp_overlap 216888 216885 GTACGACAACAAGCT GCGTCGGT TTC ACCGACAC TTCTTGGGGTTGTAT TERM 278 217413 - 217401 - H 84 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 279 220265 - 220244 - H 73 -8.7 -3.84961 | TATTGAAGTAGTAAA GCTTTTGCC TGAC GGCAATAGC GCCGTGGAACCACCT TERM 280 220401 - 220378 - H 80 -12.4 -3.36878 | opp_overlap 220380, overlap 220380 GGCACCTATTTAGAA GAGGCCTCCC ATTC GGGAGGCCTT TTTGCATTGGAATTT TERM 281 220399 - 220380 - H 95 -15 -3.254 | opp_overlap 220380, overlap 220378 CACCTATTTAGAAGA GGCCTCCC ATTC GGGAGGCC TTTTTGCATTGGAAT TERM 282 220380 - 220399 + H 100 -15 -4.74504 | opp_overlap 220380 220378 CACCTATTTAGAAGA GGCCTCCC ATTC GGGAGGCC TTTTTGCATTGGAAT TERM 283 220463 - 220448 - H 74 -4.7 -4.72272 | TTCTTTTAGTAAAAA TGCTG GGATGT CAGCA CGTTGCCCGTTACTC AHA_0204 220520 - 221485 + | DNA-binding transcriptional repressor EbgR TERM 284 224159 - 224122 - g 70 -10.5 -3.57039 | gap 1, overlap 224116 224155 GATCGACAACCACAA GCAGG-AGTACGAGAGCC TGT GGCACCCGAACCACCTGC AGATCATGCAGGAGC ebgA 221807 - 224881 + | cryptic beta-D-galactosidase subunit alpha AHA_0206 224878 - 225333 + | evolved beta-D-galactosidase, beta subunit; cryptic gene AHA_0207 225436 - 226881 + | inner membrane transporter YgjI TERM 285 226928 - 226906 - f 73 -9 -3.91084 | overlap 226907 TGACTCCCAATCAAA CCGGGTGGTC GTT GGCCACCCGC AAACCGTTGAACCAG TERM 286 226927 - 226907 - f 79 -12.5 -2.94329 | overlap 226906 GACTCCCAATCAAAC CGGGTGGTC GTT GGCCACCCG CAAACCGTTGAACCA AHA_0208 226910 - 227296 + | hypothetical protein TERM 287 227674 - 227663 - g 77 -2.2 -5.06414 | gap 1, overlap 227664 CTCGGCCAACAAAAA CTCCG AGT CGG-G CATGTACGACTGGCT TERM 288 227716 - 227696 - g 72 -4.5 -4.57569 | opp_overlap 227695 227706 CGACTGGCTGAAAAA GCCGCTCGG CAC CCGGATGGC CTATCTGGGCTCGTT AHA_0209 227463 - 228899 + | amino acid permease TERM 289 228931 - 228907 - f 71 -10 -3.52093 | opp_overlap 228904 228904 228925 AGAGTTGAAGCACAA GGCTGGCC GGATCCGGT GGCCAGCC GGGCTTGCTTAATTT TERM 290 229015 - 229043 + F 100 -20.5 -3.51778 | opp_overlap 229020, overlap 229018 GCTGGGGATTCGTTT CAACAGGAGCTGT GCC ACAGCTCCTGTTG TGTTTCCTGTCGTCC TERM 291 229018 - 229040 + F 100 -16.4 -3.88438 | opp_overlap 229020, overlap 229015 GGGGATTCGTTTCAA CAGGAGCTGT GCC ACAGCTCCTG TTGTGTTTCCTGTCG TERM 292 229038 - 229020 - f 84 -13.2 -3.02144 | opp_overlap 229018 229015 GGATTCGTTTCAACA GGAGCTGT GCC ACAGCTCC TGTTGTGTTTCCTGT TERM 293 229061 - 229089 + F 71 -11 -2.90496 | gap 1, overlap 229058 229063 TTTCCTGTCGTCCCC GATCACCGGCCCC GCGC GGGGACGG-GATC TGCTTTCACCGGAGA AHA_0210 229111 - 230082 + | sodium/bile acid symporter family protein TERM 294 230122 - 230100 - T 100 -19.2 -5.24129 | opp_overlap 230100 GGTCCGGATAAAAAA GAGGGAGGCC ATG GGCCTCCCTC TTTCGTTTGCTGCCT TERM 295 230100 - 230122 + T 100 -19.2 -4.10953 | opp_overlap 230100 GGTCCGGATAAAAAA GAGGGAGGCC ATG GGCCTCCCTC TTTCGTTTGCTGCCT AHA_0211 232290 - 230140 - | generic methyltransferase AHA_0212 232655 - 233377 + | hypothetical protein TERM 296 233406 - 233424 + T 100 -16 -3.6502 | opp_overlap 233406 CCGAGCAGAAAAAAA CAGGCCCG TTA CGGGCCTG TTTCGATCAGAGGTG TERM 297 233424 - 233406 - T 100 -16 -5.67063 | opp_overlap 233406 CCGAGCAGAAAAAAA CAGGCCCG TTA CGGGCCTG TTTCGATCAGAGGTG AHA_0213 234267 - 233431 - | esterase YeiG AHA_0214 235444 - 234317 - | alcohol dehydrogenase class III AHA_0215 235564 - 236469 + | LysR family transcriptional regulator TERM 298 236504 - 236487 - T 100 -14.1 -5.4505 | opp_overlap 236487 TCGCTCAATAAAAAA GGCCCGC ATGT GCGGGCC TTTTGCATGGCAAGG TERM 299 236487 - 236504 + T 100 -14.1 -4.18018 | opp_overlap 236487 TCGCTCAATAAAAAA GGCCCGC ATGT GCGGGCC TTTTGCATGGCAAGG AHA_0216 237491 - 236526 - | putative transport system permease ABC transporter protein AHA_0217 238609 - 237494 - | putative transport system permease ABC transporter protein AHA_0218 240272 - 238692 - | ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide) TERM 300 240327 - 240310 - R 100 -14.1 -4.91573 | opp_overlap 240307 240310 AAAAGAGACTAAAAA CCGGCCC GTGC GGGCCGG TCGTTGGGTTGAGAG TERM 301 240310 - 240327 + r 83 -14.1 -2.78712 | opp_overlap 240310, overlap 240307 AAAAGAGACTAAAAA CCGGCCC GTGC GGGCCGG TCGTTGGGTTGAGAG AHA_0219 241459 - 240356 - | membrane lipoprotein TERM 302 241483 - 241470 - H 74 -2.4 -5.05505 | opp_overlap 241470 ATCATAAAGGAAAAA CGTT TGCGTT AACG GTTTGAAATATAAGC TERM 303 243142 - 243165 + G 100 -10.2 -4.76075 | gap 1, opp_overlap 243131 243130 CAAGGTGCTGACCGG CCGCGC-CGGC AAC GCGGTGCGCGG TTTTGTTGATCTCAT uvrD 241787 - 243958 + | DNA helicase II AHA_0221 245614 - 244058 - | hypothetical protein TERM 304 244430 - 244407 - G 77 -2.4 -5.01732 | overlap 244410 AATTCCTCGAAAAAA TCATGATGGT CCAA ACCTTCACAA CTTTTTATTTTACGT TERM 305 245095 - 245080 - G 100 -4 -5.48787 | overlap 245081 AGAATATATAAAAAA CTAGGT TTTC ACCTAA TGAAAGAGCTTCGAA AHA_0222 246813 - 245611 - | hypothetical protein AHA_0223 247247 - 246810 - | putative lipoprotein AHA_0224 247422 - 247934 + | hypothetical protein AHA_0225 249187 - 248027 - | hypothetical protein TERM 306 249640 - 249612 - R 80 -8.8 -4.18303 | opp_overlap 249612 AGGAGAAATCAGAAA CCCGGCC-CTGACG GGG CG-CGGTGGCCGGG TGAATTGTAAAGAGT AHA_0226 249876 - 249679 - | hypothetical protein TERM 307 250223 - 250201 - g 70 -12 -3.16668 | CAAGATGCTGACCAA CCTCGACCAG TGC CTGGCCAAGG CCGAGGCCCACGCCG AHA_0227 250157 - 250657 + | hypothetical protein TERM 308 250690 - 250722 + T 80 -9.1 -4.11216 | opp_overlap 250695, overlap 250695 250697 GGCTTTGCCCAGCAT AAAAAGAGCCTGCCA CTG TGGCAGGCTCTGTCG TTTTCGGGGTCACCG TERM 309 250695 - 250717 + T 100 -17.8 -3.10091 | opp_overlap 250695, overlap 250690 250697 TGCCCAGCATAAAAA GAGCCTGCCA CTG TGGCAGGCTC TGTCGTTTTCGGGGT TERM 310 250717 - 250695 - T 100 -17.8 -4.91109 | opp_overlap 250695 250690 250697 TGCCCAGCATAAAAA GAGCCTGCCA CTG TGGCAGGCTC TGTCGTTTTCGGGGT TERM 311 250697 - 250715 + T 91 -14.6 -3.10533 | opp_overlap 250695, overlap 250695 250690 CCCAGCATAAAAAGA GCCTGCCA CTG TGGCAGGC TCTGTCGTTTTCGGG AHA_0228 251195 - 250746 - | hypothetical protein AHA_0229 251788 - 251276 - | hemolysin TERM 312 251848 - 251821 - R 100 -18.4 -3.3907 | overlap 251811 251822 TGAAAGGGGAAGCAA GCGGCCCCGTGC GGGC GCACGGGGCCGG AAGTGAGCGTCTTGC TERM 313 251847 - 251822 - R 100 -21.9 -2.6296 | overlap 251811 251821 GAAAGGGGAAGCAAG CGGCCCCGTGC GGGC GCACGGGGCCG GAAGTGAGCGTCTTG AHA_0230 252542 - 251886 - | hypothetical protein AHA_0231 252751 - 253488 + | hypothetical protein AHA_0232 254166 - 253498 - | LysR family transcriptional regulator TERM 314 253799 - 253771 - G 77 -12.5 -3.59979 | gap 1, overlap 253772 CTGTTCGAGTGGAAA GGCCTCGGCCAG GTTCGA CTGGCCGAG-CC AGGGGCTGAATCCCA AHA_0233 254382 - 254191 - | transcriptional regulatory protein AHA_0234 254484 - 255104 + | lysine exporter protein, putative TERM 315 255239 - 255259 + G 73 -11.1 -3.54459 | AACTGACATGGTCGA GGCGATGCC CAT GGCATGGCC TTTCAACAAGGTTGG TERM 316 255371 - 255396 + G 73 -8.9 -4.03413 | opp_overlap 255377, overlap 255374 CCGGATCCATGGTGC CGAACAGGCCG GCAG CGGCCTGGTGG TTTATATCCCGGGAT TERM 317 255420 - 255443 + G 70 -7.4 -4.07885 | CCGGGATTTGGCGGT GATCTGGGTG CCTA CAGCCAGGTC TTTTGCGAGAAGGTG AHA_0235 255180 - 256424 + | hypothetical protein TERM 318 256489 - 256467 - T 100 -19.2 -4.15044 | opp_overlap 256467 256470, overlap 256470 GTGCTTGCCAATAAA CAACGGGGGC TTG GCCCCCGTTG TTGTTATCGATGGCT TERM 319 256467 - 256489 + T 100 -19.2 -3.82378 | opp_overlap 256467 256470, overlap 256470 GTGCTTGCCAATAAA CAACGGGGGC TTG GCCCCCGTTG TTGTTATCGATGGCT TERM 320 256486 - 256470 - T 100 -15.1 -4.20367 | opp_overlap 256467 256470, overlap 256467 CTTGCCAATAAACAA CGGGGGC TTG GCCCCCG TTGTTGTTATCGATG TERM 321 256470 - 256486 + T 100 -15.1 -4.03888 | opp_overlap 256470 256467, overlap 256467 CTTGCCAATAAACAA CGGGGGC TTG GCCCCCG TTGTTGTTATCGATG AHA_0236 257545 - 256511 - | YeeE/YedE family protein TERM 322 257604 - 257573 - R 83 -13 -3.2794 | gap 1 GCCGAGCCAGAGTAA CGCTCCCC-CCGCGA TTG CCACGATGGGGAGCG ACCATTTTCGATTCA AHA_0237 259491 - 257746 - | methyl-accepting chemotaxis protein mgtA 260599 - 263367 + | magnesium-translocating P-type ATPase TERM 323 263442 - 263419 - T 100 -16.8 -3.827 | opp_overlap 263419 AATAATGAACGTAAA GAGGGATGGC CTGG GCCATCCCTC TTTTTTATGGCTGGC TERM 324 263419 - 263442 + T 100 -16.8 -5.28176 | opp_overlap 263419 AATAATGAACGTAAA GAGGGATGGC CTGG GCCATCCCTC TTTTTTATGGCTGGC AHA_0239 264210 - 263467 - | amino acid transporter LysE AHA_0240 265012 - 264194 - | AraC/XylS family transcriptional regulator rarD-1 265982 - 265080 - | RarD protein AHA_0242 266398 - 266108 - | hypothetical protein TERM 325 266377 - 266362 - G 100 -10.4 -5.18355 | GGCAAAAATGAAAAA GGGGGA TTTC TCCCCC CAATTCGCAGATAAG AHA_0243 267903 - 266407 - | putative aldehyde dehydrogenase TERM 326 268097 - 268058 - R 74 -10.7 -3.53091 | gap 1, opp_overlap 268076 ATCCGGCGGGGCAAA CCGCTCCG-CAAGCGCGG GCCGT CGGCGCCTGCCGAAGCAG AGGCCGGCGCGAAGG AHA_0244 268707 - 268165 - | DNA-binding protein TERM 327 268802 - 268817 + H 76 -3.2 -5.12707 | GGGTGATACCATATG GGGC AAGTTTGA GCCC TTTTTTAAGATTTCA AHA_0245 268893 - 270224 + | beta alanine--pyruvate transaminase mmsA-1 270323 - 271819 + | methylmalonate-semialdehyde dehydrogenase AHA_0247 271904 - 272659 + | glutamine amidotransferase, class I ald 272656 - 273771 + | alanine dehydrogenase TERM 328 273772 - 273825 + F 76 -12.9 -2.71712 | opp_overlap 273819, overlap 273771 TCGGTACTGGGCTGA CGCAGCCGTTGCGCGCCCGCTCGGC AAAC GTCGAGCGGGCTCACAAACCCCGCG ATTTCAGGGAGGGCC TERM 329 273832 - 273854 + F 78 -13.4 -2.66634 | opp_overlap 273819, overlap 273836 273853 AACCCCGCGATTTCA GGGAGGGCCG CCA CGGCCCTTTC TCATATACTGGGCTC TERM 330 273836 - 273850 + F 93 -12.8 -4.03078 | opp_overlap 273819, overlap 273832 CCGCGATTTCAGGGA GGGCCG CCA CGGCCC TTTCTCATATACTGG AHA_0249 273891 - 274730 + | carbohydrate kinase TERM 331 274734 - 274709 - f 75 -6.2 -4.57073 | overlap 274710 274711 CAGCGCCCTGAAAAA CTGGCTCAG-GC AGCC GCACTGAGCC-G CCATGAACTGTTGCC AHA_0250 275030 - 275482 + | Rrf2 family protein TERM 332 275527 - 275492 - T 100 -20.6 -3.10905 | opp_overlap 275498 275502, overlap 275495 275502 GCATAAGCCAGGCAA GCATGACAAAGGGGCC CACG GGCCCCTTTGTCATGT CCGGGATTCGGGCTC TERM 333 275524 - 275495 - T 100 -20.9 -2.76189 | opp_overlap 275498 275502, overlap 275492 275502 TAAGCCAGGCAAGCA TGACAAAGGGGCC CACG GGCCCCTTTGTCA TGTCCGGGATTCGGG TERM 334 275498 - 275521 + T 89 -16.8 -2.62933 | opp_overlap 275495 275492 275502, overlap 275502 GCCAGGCAAGCATGA CAAAGGGGCC CACG GGCCCCTTTG TCATGTCCGGGATTC TERM 335 275517 - 275502 - T 90 -11.8 -4.02022 | opp_overlap 275502 275498, overlap 275495 275492 GGCAAGCATGACAAA GGGGCC CACG GGCCCC TTTGTCATGTCCGGG TERM 336 275502 - 275517 + T 90 -11.8 -4.0162 | opp_overlap 275495 275492 275502, overlap 275498 GGCAAGCATGACAAA GGGGCC CACG GGCCCC TTTGTCATGTCCGGG AHA_0251 276053 - 275541 - | NapF protein TERM 337 276058 - 276046 - G 85 -3.4 -5.38047 | opp_overlap 276055 CAGCGACAGAAAAAA TGAG TCATG CTCA CCCCTGATACCTATT AHA_0252 276180 - 276407 + | hypothetical protein TERM 338 276602 - 276592 - g 73 -6.8 -4.29738 | overlap 276574 GCAGAGCCAGCAAAA GCTG GAG CAGC AGCAGACCCTGCTCA AHA_0253 276404 - 277744 + | DNA recombination protein RmuC TERM 339 277769 - 277801 + T 90 -10.5 -4.33755 | opp_overlap 277746 277773 277776, overlap 277773 277776 TCATTCGCTCAAGCA ACAAGAAGGGCAGCC ACT GGCTGCCCTTCTGCA TTTCTTCGTCTTGAT TERM 340 277797 - 277773 - T 100 -20.1 -3.81146 | opp_overlap 277769 277773 277776, overlap 277746 277776 TCGCTCAAGCAACAA GAAGGGCAGCC ACT GGCTGCCCTTC TGCATTTCTTCGTCT TERM 341 277773 - 277797 + T 100 -20.1 -2.77685 | opp_overlap 277746 277773 277776, overlap 277769 277776 TCGCTCAAGCAACAA GAAGGGCAGCC ACT GGCTGCCCTTC TGCATTTCTTCGTCT TERM 342 277794 - 277776 - T 100 -16 -4.0342 | opp_overlap 277773 277769 277776, overlap 277746 277773 CTCAAGCAACAAGAA GGGCAGCC ACT GGCTGCCC TTCTGCATTTCTTCG TERM 343 277776 - 277794 + T 100 -16 -3.52234 | opp_overlap 277746 277776 277773, overlap 277773 277769 CTCAAGCAACAAGAA GGGCAGCC ACT GGCTGCCC TTCTGCATTTCTTCG AHA_0254 279292 - 277850 - | TrkH TERM 344 279358 - 279323 - R 93 -11.2 -4.42386 | gap 1, opp_overlap 279323 279320 CGTTGATTGACAAAA GACCCGG-ACAATCCCT GGT AGAGGCTGTGCCGGGTC TGGGTTGTGCTGCCT trkA 280765 - 279389 - | potassium transporter peripheral membrane component TERM 345 280894 - 280873 - R 72 -11.5 -3.14344 | GATGTTGGGCAGTAA TGGGTGCCG CAAG CGGCACCCG TCGTGATGATGGCCC sun 282205 - 280913 - | ribosomal RNA small subunit methyltransferase B TERM 346 282222 - 282251 + r 85 -15.7 -2.57192 | overlap 282227 GTGTTACCTTAGATG CGCAAGTCGGGGC CTGG GCCCCGCCTTGTG TCAATTCAGTTCAAT TERM 347 282227 - 282246 + r 74 -10.6 -3.55368 | overlap 282222 ACCTTAGATGCGCAA GTCGGGGC CTGG GCCCCGCC TTGTGTCAATTCAGT fmt 283206 - 282262 - | methionyl-tRNA formyltransferase TERM 348 283165 - 283144 - G 86 -12.9 -3.9644 | GTCGGAAGACAACAA CGCCGCCAG GTGA CGGGCGGCG AAGTCGGGAGTACCG def-1 283731 - 283219 - | peptide deformylase AHA_0259 283840 - 284928 + | LysM domain-containing protein dprA 284930 - 286045 + | DNA protecting protein DprA AHA_0261 286038 - 286511 + | hypothetical protein AHA_0262 286567 - 287124 + | topoisomerase DNA-binding C4 zinc finger domain-containing protein purE-2 287199 - 287702 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 349 287810 - 287830 + F 100 -11.1 -5.24531 | opp_overlap 287807, overlap 287811 GTTAATCAATGATGA GGCGACAGC CCG GCTGTCGCA TTTTTTATGCCCAAT TERM 350 287811 - 287829 + F 95 -14.6 -3.73995 | opp_overlap 287807, overlap 287810 TTAATCAATGATGAG GCGACAGC CCG GCTGTCGC ATTTTTTATGCCCAA AHA_0264 287837 - 288397 + | Sua5/YciO/YrdC family protein hemF 288492 - 289400 + | coproporphyrinogen III oxidase TERM 351 289406 - 289422 + F 100 -13.7 -3.94877 | opp_overlap 289406 GTGGTTGTGACCAGA GGGGCCA TGA TGGCCCC TTCTTATTGGCCGAT TERM 352 289422 - 289406 - f 79 -13.7 -2.78384 | opp_overlap 289406 GTGGTTGTGACCAGA GGGGCCA TGA TGGCCCC TTCTTATTGGCCGAT TERM 353 289432 - 289444 + F 70 -9.1 -3.73647 | GGCCCCTTCTTATTG GCCGA TAT TCGGC TTGTTCCTGAGTGCG aroE 289504 - 290325 + | shikimate 5-dehydrogenase AHA_0267 290322 - 290582 + | hypothetical protein TERM 354 290678 - 290699 + T 100 -10.9 -5.77988 | opp_overlap 290677 290678 AGTCACCTTTATAAC TCCCCGGTA TTCG TACTGGGGA TTTTTTTATCTATAT TERM 355 290879 - 290904 + T 100 -9.7 -5.66684 | opp_overlap 290877, overlap 290881 ATGTGGCTGAATAGC GACCCCGGTGA GTCA TCATCGGGGTG TTTTTTTATGGGTTG TERM 356 290881 - 290902 + T 95 -12.3 -4.46105 | opp_overlap 290877, overlap 290879 GTGGCTGAATAGCGA CCCCGGTGA GTCA TCATCGGGG TGTTTTTTTATGGGT TERM 357 291040 - 291073 + T 100 -15.3 -5.04325 | overlap 291043 TTTGAACTGATTGTT TAAGGCCGGTACTGC GTTT GCAGAACCGGCCTCA TTTTTATCCTTTCCA TERM 358 291043 - 291070 + T 100 -17 -3.36613 | overlap 291040 GAACTGATTGTTTAA GGCCGGTACTGC GTTT GCAGAACCGGCC TCATTTTTATCCTTT AHA_0268 292023 - 291373 - | GTP-binding protein YihA AHA_0269 292127 - 292783 + | cytochrome c4 TERM 359 292817 - 292837 + F 100 -16.9 -4.88293 | TCTCATTGATATTGA CGAGGAGCC GCC GGCTCCTCG TTTCTTTTTGGCCTT TERM 360 293386 - 293371 - f 73 -10.4 -3.44444 | opp_overlap 293371, overlap 293365 GCATAAACATATCAA GGCAGC TTCG GCTGCC TTTTTTCTTTTGGGT TERM 361 293371 - 293386 + F 100 -10.4 -5.80951 | opp_overlap 293371 293365 GCATAAACATATCAA GGCAGC TTCG GCTGCC TTTTTTCTTTTGGGT AHA_0270 293413 - 294189 + | hypothetical protein TERM 362 294203 - 294228 + G 86 -8.1 -4.64676 | overlap 294204 294206 GATGAGTGGATGGAT GCTGGCCGCCT TGTT GGGCGGCCTGA TTTTGTTGGGACTGG TERM 363 294204 - 294227 + G 72 -11.6 -3.38324 | overlap 294203 294206 ATGAGTGGATGGATG CTGGCCGCCT TGTT GGGCGGCCTG ATTTTGTTGGGACTG TERM 364 294206 - 294225 + G 74 -12.8 -3.25538 | overlap 294204 294203 GAGTGGATGGATGCT GGCCGCCT TGTT GGGCGGCC TGATTTTGTTGGGAC AHA_0271 294201 - 294641 + | hypothetical protein hemN 294669 - 296042 + | coproporphyrinogen III oxidase TERM 365 296094 - 296065 - T 100 -16.7 -4.07885 | opp_overlap 296059 296073, overlap 296073 GATGTCGTTGGAAAA TAAAAAAACCGCC GAGA GGCGGTTTTTTTA TTGGGCTTGGCTGCA TERM 366 296073 - 296086 + T 100 -9.5 -5.80364 | opp_overlap 296065 296073, overlap 296059 TGGAAAATAAAAAAA CCGCC GAGA GGCGG TTTTTTTATTGGGCT TERM 367 296086 - 296073 - T 100 -9.5 -6.09196 | opp_overlap 296073 296059, overlap 296065 TGGAAAATAAAAAAA CCGCC GAGA GGCGG TTTTTTTATTGGGCT add-1 297112 - 296111 - | adenosine deaminase TERM 368 297203 - 297174 - R 100 -9.3 -5.05782 | opp_overlap 297176 297178, overlap 297176 297178 AGGGATCTCAAAAAA GATACCCCGTTTG AAAT CAAACGGGGTCTT ATTGGTCGGTGATTT TERM 369 297201 - 297176 - R 91 -11.9 -4.15748 | opp_overlap 297176 297178, overlap 297174 297178 GGATCTCAAAAAAGA TACCCCGTTTG AAAT CAAACGGGGTC TTATTGGTCGGTGAT TERM 370 297176 - 297201 + r 83 -11.9 -3.73914 | opp_overlap 297176 297174 297178, overlap 297178 GGATCTCAAAAAAGA TACCCCGTTTG AAAT CAAACGGGGTC TTATTGGTCGGTGAT TERM 371 297199 - 297178 - R 95 -14.5 -3.66769 | opp_overlap 297176 297178, overlap 297176 297174 ATCTCAAAAAAGATA CCCCGTTTG AAAT CAAACGGGG TCTTATTGGTCGGTG TERM 372 297178 - 297199 + r 95 -14.5 -3.44998 | opp_overlap 297178 297176 297174, overlap 297176 ATCTCAAAAAAGATA CCCCGTTTG AAAT CAAACGGGG TCTTATTGGTCGGTG ntrC 298672 - 297254 - | nitrogen regulation protein NR(I) glnL 299737 - 298682 - | nitrogen regulation protein NR(II) TERM 373 299773 - 299789 + r 80 -10.9 -3.83502 | opp_overlap 299773 GCTATACACCAGCAA TGCACCA ATG TGGTGCA TTTAGTCTACCCGTA TERM 374 299789 - 299773 - R 71 -10.9 -3.26545 | opp_overlap 299773 GCTATACACCAGCAA TGCACCA ATG TGGTGCA TTTAGTCTACCCGTA AHA_0276 300399 - 299818 - | hypothetical protein TERM 375 300446 - 300461 + r 86 -11.8 -3.77206 | opp_overlap 300446 CTATCAGAGAAAAAA CCCGCC TGTC GGCGGG TTTGGTCAAGTTCTG TERM 376 300461 - 300446 - R 100 -11.8 -5.39721 | opp_overlap 300446 CTATCAGAGAAAAAA CCCGCC TGTC GGCGGG TTTGGTCAAGTTCTG glnA 301901 - 300492 - | glutamine synthetase, type I typA 302253 - 304064 + | GTP-binding protein TypA TERM 377 304089 - 304104 + F 100 -10.4 -5.64274 | opp_overlap 304089 304091 ATCGACAGACAGAGA GAGGCC TTCG GGCCTC TTTTTTTATGCCTGA rbn 304238 - 305110 + | ribonuclease BN TERM 378 305133 - 305172 + F 100 -19.5 -4.07568 | gap 2, overlap 305136 CCTTGCTGTTAGCAT C-G-ACGACCGCCCCCATC AGCA GATGGGGGCGGTCGTTCCG TTTTGAGAGGAGAGG TERM 379 305136 - 305167 + F 100 -26 -3.36823 | overlap 305133 TGCTGTTAGCATCGA CGACCGCCCCCATC AGCA GATGGGGGCGGTCG TTCCGTTTTGAGAGG TERM 380 305392 - 305409 + G 73 -12.7 -3.24747 | opp_overlap 305390 305394, overlap 305396 AACCTCAACGTAAGC CAGGCCG GCGG CGGCCTG TTGGTGGTCTCCCAG dtd 305191 - 305628 + | D-tyrosyl-tRNA(Tyr) deacylase AHA_0280 306393 - 305617 - | hypothetical protein AHA_0282 306468 - 307376 + | acetyltransferase TERM 381 307428 - 307398 - T 100 -20.6 -3.14132 | opp_overlap 307398, overlap 307402 307405 GCTGGTTCCCATCAA GCAACAAGGCCTCA TCA CGAGGCCTTGTTGC TTTCTGTCGGTTAGC TERM 382 307398 - 307428 + T 100 -19.9 -4.09108 | opp_overlap 307398 307402 307405 GCTGGTTCCCATCAA GCAACAAGGCCTC ATCAC GAGGCCTTGTTGC TTTCTGTCGGTTAGC TERM 383 307424 - 307402 - T 95 -14.2 -3.39895 | opp_overlap 307398, overlap 307398 307405 GTTCCCATCAAGCAA CAAGGCCTCA TCA CGAGGCCTTG TTGCTTTCTGTCGGT TERM 384 307421 - 307405 - T 76 -10.1 -3.83844 | opp_overlap 307398, overlap 307402 307398 CCCATCAAGCAACAA GGCCTCA TCA CGAGGCC TTGTTGCTTTCTGTC TERM 385 307445 - 307497 + T 100 -16.2 -3.05844 | overlap 307448 TTCTGTCGGTTAGCC GTTGACCGC-CTGTGCGGCCGGGGCC TTC GGCGCCGGTCGC-CAGAGCGGGCTGC TGTTGCCCTGGGGCG TERM 386 307448 - 307494 + T 100 -18.7 -2.75074 | overlap 307445 TGTCGGTTAGCCGTT GACCGC-CTGTGCGGCCGGGGCC TTC GGCGCCGGTCGC-CAGAGCGGGC TGCTGTTGCCCTGGG AHA_0283 309505 - 307439 - | AsmA family protein TERM 387 309368 - 309409 + g 73 -10.7 -3.54424 | gap 1 TCGGCCTATGGTGAC GGGCACGCCGGTCTGCTGGC TGA GCCAGCTGGC-GATGGGCCC TTTGGCCCGCTCGGC recG 311720 - 309648 - | ATP-dependent DNA helicase RecG TERM 388 311868 - 311832 - R 100 -25.4 -3.33162 | opp_overlap 311839, overlap 311839 GAGCTGAGCCCACAA TGACAAAGGCCTGCCG ATGTG CGGCAGGCCTTTGTCA TGATCCCTGAGAGCG TERM 389 311839 - 311861 + r 100 -16.3 -3.99592 | opp_overlap 311839 311832 GCCCACAATGACAAA GGCCTGCCG ATGTG CGGCAGGCC TTTGTCATGATCCCT TERM 390 311861 - 311839 - R 100 -16.3 -4.1021 | opp_overlap 311839, overlap 311832 GCCCACAATGACAAA GGCCTGCCG ATGTG CGGCAGGCC TTTGTCATGATCCCT pssA 313264 - 311897 - | phosphatidylserine synthase TERM 391 313380 - 313349 - R 81 -11.7 -3.5362 | opp_overlap 313356, overlap 313350 313356 GAATCGTCATAAAGA TGAAAAAGGCCTC ACATTG GAGGCCTTTTTCC GGACGGTTGCGATCA TERM 392 313379 - 313350 - R 83 -15.2 -2.7169 | opp_overlap 313356, overlap 313349 313356 AATCGTCATAAAGAT GAAAAAGGCCTC ACATTG GAGGCCTTTTTC CGGACGGTTGCGATC TERM 393 313373 - 313356 - R 95 -8.4 -4.96106 | opp_overlap 313356, overlap 313350 313349 CATAAAGATGAAAAA GGCCTC ACATTG GAGGCC TTTTTCCGGACGGTT TERM 394 313356 - 313373 + r 87 -8.4 -4.57341 | opp_overlap 313356 313350 313349 CATAAAGATGAAAAA GGCCTC ACATTG GAGGCC TTTTTCCGGACGGTT AHA_0286 314733 - 313393 - | low affinity gluconate transporter aroK-1 314979 - 315488 + | shikimate kinase TERM 395 315813 - 315763 - g 70 -11.9 -3.24747 | gap 3 TCCGGACATCATCAA GGC-CG-CGCTGGCCGAGCTGGGC CACAGC GCCCAGGT-GGCCGGCGGCGTGCC TGCCATGTGCGACGG edd 315485 - 317281 + | phosphogluconate dehydratase eda 317302 - 317943 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase TERM 396 317982 - 318012 + T 100 -16.3 -3.59023 | gap 1, opp_overlap 317985, overlap 317985 CTTCCGTTTGCCAAG CA-AGCAGGCCACC CTCG GGTGGCCTGCTCTG TTCTGGTTGTATGGC TERM 397 318008 - 317985 - T 100 -18.2 -3.33696 | opp_overlap 317982 317985 CCGTTTGCCAAGCAA GCAGGCCACC CTCG GGTGGCCTGC TCTGTTCTGGTTGTA TERM 398 317985 - 318008 + T 100 -18.2 -3.24091 | opp_overlap 317985, overlap 317982 CCGTTTGCCAAGCAA GCAGGCCACC CTCG GGTGGCCTGC TCTGTTCTGGTTGTA AHA_0290 319048 - 318041 - | HTH-type transcriptional regulator GntR TERM 399 319061 - 319086 + H 79 -3.3 -5.27335 | opp_overlap 319067, overlap 319063 CATCTCGGGATCCGG CAGAAATGTTA CACG TAACATTACCG TTTTTGTTTAACAAA AHA_0291 319139 - 319789 + | Qnr TERM 400 319873 - 319857 - T 100 -12.3 -5.14563 | opp_overlap 319857 GCGGCGATCAAAAAA GCCTGCA TGA TGCAGGC TTTTCTGGATGGCAG TERM 401 319857 - 319873 + T 95 -12.3 -4.42386 | opp_overlap 319857 GCGGCGATCAAAAAA GCCTGCA TGA TGCAGGC TTTTCTGGATGGCAG yibP 321221 - 319911 - | M23B family non-peptidase protein TERM 402 321158 - 321190 + g 95 -11.2 -4.42238 | gap 1, opp_overlap 321159 321162, overlap 321159 ACGACAGACAAAAAA ACAG-CGCGCCGGCC AACA GGCCGACGCGACTGG TTTTGGTTGAAATAA TERM 403 321159 - 321189 + g 80 -14.7 -3.2486 | gap 1, opp_overlap 321159 321162, overlap 321158 CGACAGACAAAAAAA CAG-CGCGCCGGCC AACA GGCCGACGCGACTG GTTTTGGTTGAAATA TERM 404 321189 - 321159 - G 100 -16.9 -5.76633 | gap 1, opp_overlap 321159 321158, overlap 321162 CGACAGACAAAAAAA CAG-CGCGCCGGCC AACA GGCCGACGCGACTG GTTTTGGTTGAAATA TERM 405 321185 - 321162 - G 91 -17.4 -3.28446 | opp_overlap 321159 321158, overlap 321159 CAGACAAAAAAACAG CGCGCCGGCC AACA GGCCGACGCG ACTGGTTTTGGTTGA gpmI 322955 - 321231 - | phosphoglyceromutase TERM 406 323146 - 323183 + G 100 -10.5 -4.85599 | overlap 323149 GCAGCCTGGTTCGGC CTGGCAGGCACCCTGGT TTAC ACCACGGTGCGTGCTCG TTTTTCTCCGGTGAA TERM 407 323149 - 323180 + G 74 -13 -3.32317 | overlap 323146 GCCTGGTTCGGCCTG GCAGGCACCCTGGT TTAC ACCACGGTGCGTGC TCGTTTTTCTCCGGT AHA_0294 323086 - 323517 + | rhodanese domain-containing protein secB 323565 - 324035 + | preprotein translocase subunit SecB AHA_0296 324038 - 325042 + | glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) TERM 408 325061 - 325092 + T 100 -18.8 -3.57387 | opp_overlap 325066, overlap 325066 GCTCGCCGCAGAATG CAAAAGGCCCCGCC AGCT GGCGGGGCCTTTTC TTTGCCGCATGTCTT TERM 409 325066 - 325087 + T 100 -18.7 -4.87133 | opp_overlap 325066, overlap 325061 CCGCAGAATGCAAAA GGCCCCGCC AGCT GGCGGGGCC TTTTCTTTGCCGCAT TERM 410 325087 - 325066 - T 100 -18.7 -4.3208 | opp_overlap 325061 325066 CCGCAGAATGCAAAA GGCCCCGCC AGCT GGCGGGGCC TTTTCTTTGCCGCAT gntY 325704 - 325126 - | putative DNA uptake protein AHA_0298 326513 - 325785 - | comF family protein bioH 326550 - 327314 + | putative pimeloyl-BioC--CoA transferase BioH AHA_0300 327386 - 327619 + | flagellar hook protein FlgE AHA_0301 327621 - 328418 + | hypothetical protein AHA_0302 328514 - 328792 + | hypothetical protein TERM 411 328829 - 328816 - T 100 -9.5 -5.30686 | opp_overlap 328816 AACAGCGACAAAAAA GCCCC GCGA GGGGC TTTTTGCATTCCGGG TERM 412 328816 - 328829 + T 95 -9.5 -4.74103 | opp_overlap 328816 AACAGCGACAAAAAA GCCCC GCGA GGGGC TTTTTGCATTCCGGG AHA_0303 331352 - 328848 - | S1 RNA-binding domain-containing protein TERM 413 328975 - 328988 + g 93 -9.5 -4.72272 | overlap 328956 TCGGCCGGTTTGCGT GCCGG CTGG CCGGC TTTTTCATCCAGACG greB 331897 - 331424 - | transcription elongation factor GreB AHA_0305 332134 - 332853 + | transcriptional regulator OmpR envZ 332859 - 334160 + | osmolarity sensor protein TERM 414 334191 - 334162 - T 91 -15.1 -3.07935 | opp_overlap 334166, overlap 334166 AGTGGATTGATTGAA CGAAGGGCGTATC CGTG GATACGCCCTTTG CATGTCAGGCTTGCG TERM 415 334187 - 334166 - T 95 -14.5 -3.3782 | opp_overlap 334166, overlap 334162 GATTGATTGAACGAA GGGCGTATC CGTG GATACGCCC TTTGCATGTCAGGCT TERM 416 334166 - 334187 + T 95 -14.5 -3.7108 | opp_overlap 334166 334162 GATTGATTGAACGAA GGGCGTATC CGTG GATACGCCC TTTGCATGTCAGGCT AHA_0307 335110 - 334196 - | drug/metabolite exporter family protein TERM 417 335410 - 335394 - g 75 -4.3 -4.71482 | opp_overlap 335400, overlap 335386 335385 335397 AGGAAACGTGAAAAA TCACACC TCT GGCGGGA GTAATCTCGGTCGGG rpsJ 335374 - 335778 + | ribosomal protein S10 TERM 418 335840 - 335861 + G 73 -8.1 -4.04206 | gap 1 AAAGTGGGTATGACT CGC-ATCTTC ACT GAAGATGGCG TTTCTATCCCGGTGA rplC 335801 - 336433 + | ribosomal protein L3 rplD 336451 - 337056 + | 50S ribosomal protein L4 rplW 337053 - 337355 + | ribosomal protein L23 rplB 337371 - 338192 + | 50S ribosomal protein L2 rpsS 338215 - 338493 + | 30S ribosomal protein S19 rplV 338504 - 338848 + | ribosomal protein L22 TERM 419 338937 - 338958 + G 76 -8.1 -4.13767 | gap 1, opp_overlap 338936 CGAACACCAAAGACT TCGCTG-ACA ACC TGTACAGCGA TTTTCAAGTACGCCA rpsC 338852 - 339565 + | ribosomal protein S3 rplP 339579 - 339992 + | 50S ribosomal protein L16 TERM 420 340145 - 340127 - g 76 -10.2 -3.93256 | CACACTCTGAAACAA GTGCGTCG TGA CGTCGCAC GTATCAAGACTGTAC rpmC 339989 - 340183 + | ribosomal protein L29 TERM 421 340381 - 340345 - g 71 -8.6 -3.827 | gap 1 AACAACGAATGCAAA GCTGGCGAC-CTCGTGG AAAT CCGCGAATGCCGCCCGC TGTCCAAGACCAAGT rpsQ 340183 - 340431 + | ribosomal protein S17 TERM 422 340448 - 340474 + F 100 -18.1 -5.05782 | opp_overlap 340452 CGGTACTTTGTAGTC CAAACGGCCCC TTAGC GGGGCCGTTTG TTTTTTAGGCTACCT TERM 423 340470 - 340452 - f 85 -13.1 -3.60098 | opp_overlap 340448 ACTTTGTAGTCCAAA CGGCCCC TTAGC GGGGCCG TTTGTTTTTTAGGCT rplN 340579 - 340947 + | ribosomal protein L14 rplX 340959 - 341276 + | ribosomal protein L24 rplE 341290 - 341829 + | 50S ribosomal protein L5 AHA_0322 341840 - 342145 + | 30S ribosomal protein S14 rpsH 342167 - 342559 + | ribosomal protein S8 AHA_0324 342573 - 343106 + | 50S ribosomal protein L6 rplR 343116 - 343469 + | ribosomal protein L18 rpsE 343484 - 343984 + | ribosomal protein S5 rpmD 343991 - 344170 + | ribosomal protein L30 TERM 424 344359 - 344369 + G 73 -6.8 -4.30719 | TTGAAAATCCGTCTG CCGA AGT TCGG TTTCTTCTCCCGCAA rplO 344173 - 344610 + | ribosomal protein L15 secY 344619 - 345947 + | preprotein translocase subunit SecY TERM 425 346107 - 346155 + F 95 -15 -3.23853 | gap 2, opp_overlap 346116 346118, overlap 346109 346118 TTTACGGTTAGTACT TGCAACAAATAGTTGTGCTGGCTA ATA TAGCCAGC-CAACT-TTTGTTGTG TATTGGTTGACCGCC TERM 426 346109 - 346153 + F 100 -17.6 -3.18366 | gap 2, opp_overlap 346116 346118, overlap 346107 346118 TACGGTTAGTACTTG CAACAAATAGTTGTGCTGGCTA ATA TAGCCAGC-CAACT-TTTGTTG TGTATTGGTTGACCG TERM 427 346147 - 346116 - f 88 -11 -4.1711 | gap 1, opp_overlap 346109 346107 346118, overlap 346118 AGTACTTGCAACAAA TAGTTGTGCTGGCTA ATA TAGCCAGC-CAACTT TTGTTGTGTATTGGT TERM 428 346118 - 346145 + F 100 -13.6 -4.90002 | gap 1, opp_overlap 346118 346116, overlap 346109 346107 TACTTGCAACAAATA GTTGTGCTGGCTA ATA TAGCCAGC-CAAC TTTTGTTGTGTATTG TERM 429 346145 - 346118 - f 89 -13.6 -3.68324 | gap 1, opp_overlap 346109 346107 346118, overlap 346116 TACTTGCAACAAATA GTTGTGCTGGCTA ATA TAGCCAGC-CAAC TTTTGTTGTGTATTG rpsM 346228 - 346584 + | 30S ribosomal protein S13 TERM 430 346885 - 346909 + G 70 -9.9 -3.57792 | CCGGTCGTGAGTCTT CCATCCGCGCT CTG AACGCGGCTGG TTTCCGCATCACTAA rpsK 346599 - 346988 + | 30S ribosomal protein S11 rpsD 347028 - 347648 + | ribosomal protein S4 TERM 431 347683 - 347693 + G 74 -5.4 -4.63218 | GACACAATGCTGGGT TCTG TAA CAGA TTTTCTTAAACCGCG rpoA 347674 - 348663 + | DNA-directed RNA polymerase subunit alpha rplQ 348707 - 349090 + | ribosomal protein L17 TERM 432 349096 - 349122 + T 90 -10.9 -4.32049 | opp_overlap 349101, overlap 349101 TGCTGAGTGATAAAG AAAAAGCCGGG CTTGT CCCGGCTTTTC TTTTAATGGATTCTG TERM 433 349117 - 349101 - T 100 -10.8 -5.38958 | opp_overlap 349096 349101 AGTGATAAAGAAAAA GCCGGG CTTGT CCCGGC TTTTCTTTTAATGGA TERM 434 349101 - 349117 + T 100 -10.8 -5.13722 | opp_overlap 349101, overlap 349096 AGTGATAAAGAAAAA GCCGGG CTTGT CCCGGC TTTTCTTTTAATGGA TERM 435 349497 - 349472 - T 72 -2.6 -4.96848 | gap 1 CCTGGTACAGAAAAA GCCAGCCAG TGGTATGAG CT-GCTGGC AGAGGAGTGGCTAAT TERM 436 351822 - 351785 - T 77 -11.5 -3.61398 | opp_overlap 351790, overlap 351788 TCTTCTTGCTAACAA GAATGCAGAGTTAAGAA CTGA TTCTTAACTCTGTTTTC TTCAGCCTTGTGCTG TERM 437 351819 - 351788 - T 71 -7.4 -3.9461 | opp_overlap 351790, overlap 351785 TCTTGCTAACAAGAA TGCAGAGTTAAGAA CTGA TTCTTAACTCTGTT TTCTTCAGCCTTGTG TERM 438 351790 - 351817 + T 100 -14.4 -4.65747 | opp_overlap 351788 351785 TTGCTAACAAGAATG CAGAGTTAAGAA CTGA TTCTTAACTCTG TTTTCTTCAGCCTTG TERM 439 351945 - 351931 - T 74 -7.2 -4.07687 | opp_overlap 351921 351931 351925 ACTTCTTGGCGAAAA CCAAAT TTT ATTTGG TCCTTGTTGTACAGC TERM 440 352489 - 352477 - T 84 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 441 355268 - 355287 + T 100 -13.6 -5.72207 | opp_overlap 355268 GCCACTACTTAAGAA GCCCAGTC TAAC GACTGGGC TTTTTTTCGTTTCCG TERM 442 355287 - 355268 - T 89 -13.6 -3.69395 | opp_overlap 355268 GCCACTACTTAAGAA GCCCAGTC TAAC GACTGGGC TTTTTTTCGTTTCCG TERM 443 355733 - 355712 - T 100 -13.7 -5.05113 | TGCACATAAAGAAAA GGGGACAGC GGCT GCCGTCCCC TCAAGTCATCTAGTC TERM 444 356132 - 356144 + T 77 -7.7 -4.23045 | TGAGGTGTTCCTTGC CCACA CCC TGTGG TTTATTCCCTGCTTA TERM 445 356533 - 356505 - T 100 -16.1 -3.80746 | opp_overlap 356511, overlap 356511 TGCTCAAAAAGAATA CAAAAAGCCGGGC TTT GCCCGGCTTTTTT TCTGAGGTGGTCAGC TERM 446 356527 - 356511 - T 100 -15.1 -5.25799 | opp_overlap 356511, overlap 356505 AAAAGAATACAAAAA GCCGGGC TTT GCCCGGC TTTTTTTCTGAGGTG TERM 447 356511 - 356527 + T 100 -15.1 -5.626 | opp_overlap 356511 356505 AAAAGAATACAAAAA GCCGGGC TTT GCCCGGC TTTTTTTCTGAGGTG AHA_0340 357545 - 356544 - | hypothetical protein TERM 448 356802 - 356816 + g 73 -8.6 -3.9777 | GACATCCTGATACCC CTGATC GCG GATCAG TTTCTGGATGTTGAA TERM 449 357577 - 357599 + r 93 -12.1 -4.25104 | GTATCCTAGCCATGC CTTGCGACA GTCTA TGTCGCAAG TTTTGCTGCGACAAC TERM 450 357715 - 357700 - R 77 -4 -5.05782 | overlap 357709 ATCGAGGCTAAAAAA TGATGA AAAT TCACCA AATGAAAGTGCTGTC AHA_0341 358220 - 357834 - | SirB family protein kefB 360073 - 358217 - | glutathione-regulated potassium-efflux system protein KefB AHA_0343 360824 - 360144 - | modulator of glutathione-dependent potassium efflux system AHA_0344 361717 - 360821 - | LysR family transcriptional regulator TERM 451 361013 - 360986 - GH 86 -12 -3.85698 | CCCGTCCGGCAGAAA GCTGATGCCGAC TCCG GCCAGCACCAGC GCCATCACCAGCCCC TERM 452 361437 - 361418 - GH 71 -10 -3.53012 | gap 1, opp_overlap 361396, overlap 361421 CGCCTTCTGGCGAAA CAGCGCCGG CAG CCGGCG-TG CCTCTTCCACCAGCT TERM 453 361435 - 361421 - GH 75 -12.8 -2.60496 | opp_overlap 361396, overlap 361418 CTTCTGGCGAAACAG CGCCGG CAG CCGGCG TGCCTCTTCCACCAG AHA_0345 361687 - 362529 + | clavaldehyde dehydrogenase AHA_0346 362617 - 362940 + | hypothetical protein TERM 454 363017 - 363033 + G 77 -4.3 -4.95155 | overlap 363003 CTGTTATTGGCCGTG CTGGCCG GTA CCGTCAG TTTTTCTGCTCTGGC TERM 455 363335 - 363287 - g 80 -5.2 -4.8622 | gap 2, opp_overlap 363294 CTGCTCAAGGAAAAA CCGGCG-A-TCCGCGGCCTGACCA TTC CGGGCATGCCCCAGAGTGCGCCAG GCATGGATATTCCGG AHA_0347 362990 - 363421 + | hypothetical protein TERM 456 363503 - 363528 + F 100 -20.5 -4.18018 | CACGGTCAGGTATGG GGGCCGCCATC GCGA GATGGCGGCCC TTTTACATCAGGGCG TERM 457 363808 - 363793 - g 71 -6 -4.25056 | overlap 363795 CACGCCATCAAGAAA CACGGG GATA CCCGGG TCGACAACTACTACT AHA_0348 363580 - 365799 + | protease II TERM 458 365839 - 365809 - f 83 -14.1 -2.83905 | GCATAAGTCACCACA GTTGCAGCCCTTG CCAGT CAAGGGCTGCAAA AGAATCTCACTCCTC TERM 459 366009 - 366033 + F 100 -17.3 -3.15354 | overlap 366012 GCCGTTATGACTCTT TAATTGGCCCC CTC GGGGCCAATTA TCTTCGGTTGGCATG TERM 460 366012 - 366030 + F 95 -14.6 -3.71686 | overlap 366009 GTTATGACTCTTTAA TTGGCCCC CTC GGGGCCAA TTATCTTCGGTTGGC TERM 461 366754 - 366718 - g 74 -4.9 -4.58283 | opp_overlap 366718 366751 GAAGGGGTGGAAAAA GGGCGACTTCGGCCTGG TCT CCGAGCTCAAGCCGGCC GAGCAGGCCTCGGCA AHA_0349 366071 - 367186 + | TRAP transporter solute receptor TAXI family protein TERM 462 367213 - 367260 + F 74 -10.5 -3.47227 | gap 1, overlap 367218 AGGGCCGCTGTCACT CTCTTCGACACCCGCCTGCCGC AGCCC GTGGCAG-CGGGTGTCGTGTCG TTGTACTCGTTGGCA TERM 463 367218 - 367255 + F 100 -20 -2.9834 | gap 1, overlap 367213 CGCTGTCACTCTCTT CGACACCCGCCTGCCGC AGCCC GTGGCAG-CGGGTGTCG TGTCGTTGTACTCGT TERM 464 368352 - 368365 + G 74 -9.5 -3.84451 | CCAAGCCCTGGCTGC GCCGG TTGA CCGGC TTTGCCTTTGGCGCC TERM 465 368537 - 368508 - g 70 -7.7 -4.07568 | overlap 368509 TGGGGCTGTTGAAAA TTGCCGCCAGCAA TGAG CCGCTGGCGGCGG AAGATCCGGACAAGC AHA_0350 367289 - 369841 + | TRAP transporter, 4TM/12TM fusion protein TERM 466 369892 - 369842 - T 100 -17.6 -3.40403 | opp_overlap 369858 369884, overlap 369843 369845 369858 GTGGTGCGAGCATAA CCAGGGTCAATGAAAACGGCGCCA TCA TGGCGCCGTTTTCATGCTCCCCGC TGGGGGCTTATTCCT TERM 467 369891 - 369843 - T 100 -21.1 -2.64099 | opp_overlap 369858 369884, overlap 369842 369845 369858 TGGTGCGAGCATAAC CAGGGTCAATGAAAACGGCGCCA TCA TGGCGCCGTTTTCATGCTCCCCG CTGGGGGCTTATTCC TERM 468 369889 - 369845 - T 100 -20.1 -2.86271 | opp_overlap 369858 369884, overlap 369843 369842 369858 GTGCGAGCATAACCA GGGTCAATGAAAACGGCGCCA TCA TGGCGCCGTTTTCATGCTCCC CGCTGGGGGCTTATT TERM 469 369876 - 369858 - T 100 -16 -4.41494 | opp_overlap 369858, overlap 369845 369843 369842 CAGGGTCAATGAAAA CGGCGCCA TCA TGGCGCCG TTTTCATGCTCCCCG TERM 470 369858 - 369876 + T 100 -16 -4.30576 | opp_overlap 369858 369845 369843 369842 CAGGGTCAATGAAAA CGGCGCCA TCA TGGCGCCG TTTTCATGCTCCCCG AHA_0351 370010 - 369900 - | hypothetical protein TERM 471 370041 - 370073 + r 76 -10.5 -3.63694 | GAGGGATTATTCCTG CGGATCCTGCTCCTG CAG CAGGCTCAGGGTCTG TTGTTCCACCTGGCT AHA_0352 370184 - 370032 - | hypothetical protein AHA_0353 370361 - 370987 + | hypothetical protein TERM 472 371031 - 371056 + T 71 -11.9 -2.54988 | opp_overlap 371036, overlap 371036 GGCGTGTGCAGACAA AAAAACGGGCC CTCA GGCCCGTTTTG CTATTCCATTTTCAT TERM 473 371051 - 371036 - T 100 -11.8 -5.71712 | opp_overlap 371031 371036 GTGCAGACAAAAAAA CGGGCC CTCA GGCCCG TTTTGCTATTCCATT TERM 474 371036 - 371051 + T 95 -11.8 -4.44284 | opp_overlap 371036, overlap 371031 GTGCAGACAAAAAAA CGGGCC CTCA GGCCCG TTTTGCTATTCCATT AHA_0354 372631 - 371078 - | multidrug resistance protein B AHA_0355 373683 - 372631 - | HlyD family secretion protein TERM 475 373149 - 373176 + g 81 -13.4 -3.62572 | gap 1 CATCCAGCACCAGCA GCCGCTC-GCGGG CGG CCTGCAGGGCGGC TTTGGCCTCCTGCTC AHA_0356 373780 - 374682 + | LysR family transcriptional regulator AHA_0357 374739 - 375053 + | hypothetical protein AHA_0358 376387 - 375068 - | proton/glutamate symporter AHA_0359 376422 - 376805 + | hypothetical protein AHA_0360 376908 - 377507 + | hypothetical protein TERM 476 377557 - 377531 - T 95 -10.8 -4.67608 | opp_overlap 377535, overlap 377533 377535 CAGGCCAACAGAAAA GACACGGGGCTC GAC GAGCCCCGTTTT TTTGCCTGTGAGCCG TERM 477 377555 - 377533 - T 100 -13.4 -3.94773 | opp_overlap 377535, overlap 377531 377535 GGCCAACAGAAAAGA CACGGGGCTC GAC GAGCCCCGTT TTTTTGCCTGTGAGC TERM 478 377553 - 377535 - T 100 -16 -3.55442 | opp_overlap 377535, overlap 377533 377531 CCAACAGAAAAGACA CGGGGCTC GAC GAGCCCCG TTTTTTTGCCTGTGA TERM 479 377535 - 377553 + T 100 -16 -5.50499 | opp_overlap 377535 377533 377531 CCAACAGAAAAGACA CGGGGCTC GAC GAGCCCCG TTTTTTTGCCTGTGA AHA_0361 378580 - 377612 - | HTH-type transcriptional regulator YidZ TERM 480 378714 - 378752 + H 100 -19.8 -2.50589 | opp_overlap 378722, overlap 378722 AGGGGACAAGTAGCA TCAAGCAATACGGCGACC CTG GGTCGCCGTATTTTTTGA ATGATTTATTTGCAA TERM 481 378744 - 378722 - H 100 -17.8 -3.41961 | opp_overlap 378714 378722 AGTAGCATCAAGCAA TACGGCGACC CTG GGTCGCCGTA TTTTTTGAATGATTT TERM 482 378722 - 378744 + H 100 -17.8 -5.13521 | opp_overlap 378722, overlap 378714 AGTAGCATCAAGCAA TACGGCGACC CTG GGTCGCCGTA TTTTTTGAATGATTT AHA_0362 378854 - 379015 + | hypothetical protein AHA_0363 379030 - 379332 + | hypothetical protein TERM 483 379364 - 379347 - f 76 -12.7 -2.78463 | opp_overlap 379333 379338 379347 AGCCTGCTGATGACA CGGCAGG CTTG CCTGCCG TGTTGACCCTTCTGC TERM 484 379347 - 379364 + F 81 -12.7 -3.07233 | opp_overlap 379347, overlap 379333 379338 AGCCTGCTGATGACA CGGCAGG CTTG CCTGCCG TGTTGACCCTTCTGC TERM 485 379690 - 379678 - g 72 -2.6 -4.67651 | opp_overlap 379682, overlap 379680 ATATTGCAAAAGAAA GAGC TCAGG GCCC TGGTGGTCTATGAGC AHA_0364 379381 - 380982 + | amino-acid ABC transporter binding protein AHA_0365 381214 - 382467 + | phospholipase D family protein TERM 486 382835 - 382860 + T 100 -9.7 -5.28176 | overlap 382836 ACATGCTATTTGCGA GGGGGTGACAT GCGA GTGTCACCCCA TTTTTTATGGCTCGC TERM 487 382836 - 382859 + T 89 -13.2 -3.76182 | overlap 382835 CATGCTATTTGCGAG GGGGTGACAT GCGA GTGTCACCCC ATTTTTTATGGCTCG TERM 488 382893 - 382922 + T 100 -19.5 -4.15222 | opp_overlap 382899, overlap 382899 GCTGAGCCGTGCCCA GAAAAAGACCGCC GATT GGCGGTCTTTTTC TTTGTTCAGCCCGAT TERM 489 382916 - 382899 - T 100 -12.7 -4.82901 | opp_overlap 382893 382899 CCGTGCCCAGAAAAA GACCGCC GATT GGCGGTC TTTTTCTTTGTTCAG TERM 490 382899 - 382916 + T 100 -12.7 -5.47159 | opp_overlap 382899, overlap 382893 CCGTGCCCAGAAAAA GACCGCC GATT GGCGGTC TTTTTCTTTGTTCAG AHA_0366 384065 - 382947 - | fatty acid desaturase family proteiin AHA_0367 384214 - 384834 + | DNA-binding transcriptional repressor FabR AHA_0368 384843 - 385220 + | hypothetical protein TERM 491 385234 - 385209 - T 95 -8.4 -5.00884 | gap 1, overlap 385211 AGCGTGGGGAAAAAA GAGAAGGAGTG ACCAG CACTCCTTC-C AGAACCACCATGACA TERM 492 385233 - 385211 - T 91 -12.1 -4.13561 | overlap 385209 CGTGGGGAAAAAAGA GAAGGAGTG ACCAG CACTCCTTC CAGAACCACCATGAC TERM 493 385248 - 385271 + T 95 -14.6 -3.58726 | opp_overlap 385252, overlap 385252 CCAGAACCACCATGA CAGAGCCGGG ATTA CCCGGCTTTG TTGTCTGTGCCGCGC TERM 494 385252 - 385267 + T 95 -11.8 -4.42974 | opp_overlap 385252, overlap 385248 AACCACCATGACAGA GCCGGG ATTA CCCGGC TTTGTTGTCTGTGCC TERM 495 385267 - 385252 - T 75 -11.8 -2.9696 | opp_overlap 385252 385248 AACCACCATGACAGA GCCGGG ATTA CCCGGC TTTGTTGTCTGTGCC AHA_0369 385570 - 385259 - | hypothetical protein AHA_0370 386310 - 385681 - | methyltransferase, putative AHA_0371 386421 - 388322 + | cell division protein FtsY TERM 496 388372 - 388389 + F 83 -12.7 -3.20382 | GTCGTGCGCCCCCAG CCCCGAC CCTG GTCGGGG TTGGTCACTGTCAGG ftsE 388413 - 389081 + | cell division ATP-binding protein FtsE AHA_0373 389081 - 390034 + | cell division membrane protein TERM 497 390304 - 390326 + F 100 -7.7 -5.52909 | AGCATGCTACTTTTC GGGGGTC CTTGATTGT GACCCCC TTTTTTTGACTGTTC TERM 498 390849 - 390897 + G 71 -9.3 -3.70773 | overlap 390852 CGAATACGTTCTGCG CAACTGGCGCATGGTCAAGGTGG CGA CCACCAAGGCCCAGCGCAAGCTG TTCTTCAATCTGCGC rpoH 390490 - 391344 + | alternative sigma factor RpoH TERM 499 391357 - 391386 + F 100 -15.9 -3.54129 | opp_overlap 391363, overlap 391363 TGATGCTTCCTCCCA TAAAAACAGGGCC TGAT GGCCCTGTTTTTG TTTGACGGGGATCTG TERM 500 391363 - 391380 + F 100 -12.7 -5.27335 | opp_overlap 391363, overlap 391357 TTCCTCCCATAAAAA CAGGGCC TGAT GGCCCTG TTTTTGTTTGACGGG TERM 501 391380 - 391363 - f 100 -12.7 -4.82901 | opp_overlap 391363 391357 TTCCTCCCATAAAAA CAGGGCC TGAT GGCCCTG TTTTTGTTTGACGGG AHA_0375 391471 - 392130 + | carbonic anhydrase hutC 392142 - 392846 + | histidine utilization repressor TERM 502 392874 - 392890 + F 100 -15.1 -5.56264 | opp_overlap 392874 ACTCTTTTTGACCAA GCCCGCC TCT GGCGGGC TTTTTTGTGTTTAAG TERM 503 392890 - 392874 - f 91 -15.1 -3.14211 | opp_overlap 392874 ACTCTTTTTGACCAA GCCCGCC TCT GGCGGGC TTTTTTGTGTTTAAG hutI 392933 - 394237 + | imidazolonepropionase hutG 394230 - 395174 + | formimidoylglutamase TERM 504 395199 - 395171 - f 100 -18.1 -3.38316 | CCATCAGTTAATCAA GTAGCGGCCTGCC ACC GGCTGGCCGCCAC CCTGCTGCATCGATA hutU 395229 - 396938 + | urocanate hydratase hutH 396943 - 398475 + | histidine ammonia-lyase TERM 505 398495 - 398524 + T 85 -11.5 -3.93236 | gap 1, opp_overlap 398500, overlap 398500 CCATCCCGCCCATAA C-AAAAGACCGCCC ATC GGGCGGTCTTTGCG TTTCTGGCGTTGGTA TERM 506 398518 - 398500 - T 100 -16 -4.77165 | opp_overlap 398495 398500 CCGCCCATAACAAAA GACCGCCC ATC GGGCGGTC TTTGCGTTTCTGGCG TERM 507 398500 - 398518 + T 100 -16 -3.89215 | opp_overlap 398500, overlap 398495 CCGCCCATAACAAAA GACCGCCC ATC GGGCGGTC TTTGCGTTTCTGGCG AHA_0381 399642 - 398545 - | calcium/proton antiporter TERM 508 399697 - 399722 + r 83 -12.6 -3.17051 | gap 1, opp_overlap 399693 399691 399712, overlap 399695 GGTAAGGAACAGGGT GGCGGCGCCAC ACGAG GTGGCGC-GCC TGTTCATGATAAAGG AHA_0382 401171 - 399804 - | EAL domain-containing protein TERM 509 401099 - 401089 - G 71 -8.2 -3.86346 | overlap 401090 TGACGGCTGTAGAAA CGGG GAT CCCG CAACAGCGCCATGTC TERM 510 401637 - 401656 + H 93 -9.3 -4.82901 | TATGAGTGTTTCTTT TGGTCCC CTTTGT GGGACCA TTTTTCTGCCCGCCG AHA_0383 401850 - 403808 + | regulatory protein CsrD TERM 511 403843 - 403818 - T 100 -19.1 -3.20723 | opp_overlap 403818 GCCTGATGAATGCAA GAGAGGGTCGC CTGG GCGACCCTCTC TTTTTGTGGTTCAGC TERM 512 403818 - 403843 + T 100 -19.1 -4.98255 | opp_overlap 403818 GCCTGATGAATGCAA GAGAGGGTCGC CTGG GCGACCCTCTC TTTTTGTGGTTCAGC AHA_0384 404856 - 403909 - | ACC deaminase/D-cysteine desulfhydrase family protein AHA_0385 404926 - 405789 + | MSHA biogenesis protein MshI AHA_0386 405786 - 405890 + | hypothetical protein AHA_0387 405890 - 406483 + | hypothetical protein AHA_0388 406483 - 407130 + | msha biogenesis protein mshj AHA_0389 407520 - 409193 + | msha biogenesis protein mshl AHA_0390 409271 - 410161 + | general secretion pathway protein A AHA_0391 410257 - 411255 + | TPR repeat-containing protein TERM 513 412715 - 412746 + G 70 -13 -2.87132 | gap 1 GGCCACTTGGCTGAC CGTGCT-CTCCGGCG AAG CGCCGGGCCAGCACG TCTATCACAAGGGGC AHA_0392 411288 - 412997 + | type IV pilin AHA_0393 413051 - 414271 + | GspF family protein AHA_0394 414449 - 414913 + | hypothetical protein AHA_0395 414987 - 415658 + | msha pilin protein mshb TERM 514 416140 - 416120 - f 83 -14 -2.73275 | opp_overlap 416120, overlap 416117 416115 GATTGATAGATATCA GGCGAGGC CAAGT GCCTCGCC TTTTATAAGAGATTT TERM 515 416120 - 416140 + F 100 -14 -4.39002 | opp_overlap 416117 416115 416120 GATTGATAGATATCA GGCGAGGC CAAGT GCCTCGCC TTTTATAAGAGATTT TERM 516 416218 - 416256 + G 89 -16 -3.53012 | opp_overlap 416239, overlap 416254 TTGCTGGGGATTCTG GCCGCCTTTGCCGTGC CCAAATT GCTGGGCAAAGGCGGC TTTGAAACCCAAACC AHA_0396 416158 - 416649 + | msha pilin protein mshc mshD 416636 - 417199 + | msha pilin protein mshd TERM 517 417763 - 417775 + G 95 -10.5 -4.65933 | opp_overlap 417737 417747 CTGGCCGGGATCTCG CCCGG CAG CCGGG TTTATTTTGCCAATC AHA_0398 417199 - 418020 + | putative msha biogenesis protein msho TERM 518 418100 - 418114 + F 81 -7 -4.72272 | ATGGCCATGTTGGCG GCGGCC ATG GGGCGC TTTTTGCTCGACAGC TERM 519 421244 - 421256 + G 70 -10.5 -3.65425 | overlap 421253 GCGGGACCGTGACCC CCGCC TGT GGCGG TTTCAGCTATATGAG TERM 520 422077 - 422047 - g 71 -5.3 -4.40561 | gap 1 GTGCTGGAAAAACAA CCGCAACAGCC-GC GTTG GCTGGCCGATCCGG GGAACCTGAACAGCC AHA_0399 418483 - 422166 + | MshQ TERM 521 422236 - 422257 + F 80 -5.1 -4.83615 | overlap 422241 GCGTTTGTCGGCTTG TGCGGGTGA GTGA TGACTCGCA TTTTTGTCGCGCCTG mreB 422371 - 423411 + | rod shape-determining protein MreB TERM 522 423418 - 423439 + F 91 -7.2 -5.00616 | opp_overlap 423420, overlap 423420 TACGAATAAGACCCA AAGCCGGC CAGCGT GCCGGCTC TTTTTTGACGACCCA TERM 523 423437 - 423420 - f 76 -9.8 -3.81258 | opp_overlap 423418 423420 CGAATAAGACCCAAA GCCGGC CAGCGT GCCGGC TCTTTTTTGACGACC TERM 524 423420 - 423437 + F 83 -9.8 -4.13561 | opp_overlap 423420, overlap 423418 CGAATAAGACCCAAA GCCGGC CAGCGT GCCGGC TCTTTTTTGACGACC mreC 423454 - 424359 + | rod shape-determining protein MreC mreD 424359 - 424844 + | rod shape-determining protein MreD maf-1 424896 - 425483 + | septum formation protein Maf AHA_0404 425670 - 427139 + | ribonuclease G TERM 525 427985 - 427974 - g 80 -5.8 -4.77036 | overlap 427977 TGGCAGGATGAAAAA CAGG GTGA CCTG CACCGGCTCGGGCTG AHA_0405 427170 - 431039 + | hypothetical protein AHA_0406 431074 - 431394 + | stress responsive A/B barrel domain family protein AHA_0407 431423 - 432229 + | carbon-nitrogen family hydrolase TERM 526 433109 - 433136 + G 80 -14.2 -3.14931 | gap 1 CTTGACGCCATCGAC GCACCGGCCGGCA CCA TGCCGGT-GGTGC TTGGTGCCGGCTGGC tldD 432389 - 433828 + | protein TldD AHA_0409 433861 - 434721 + | RpiR family transcriptional regulator TERM 527 434785 - 434768 - T 100 -12.7 -5.36441 | opp_overlap 434768 TGCCGATAGAAAAAA CCACCCG CTTG CGGGTGG TTTTTTTATGGGCCA TERM 528 434768 - 434785 + T 100 -12.7 -5.60993 | opp_overlap 434768 TGCCGATAGAAAAAA CCACCCG CTTG CGGGTGG TTTTTTTATGGGCCA AHA_0410 435414 - 434809 - | hypothetical protein TERM 529 435457 - 435440 - R 100 -14.1 -5.05505 | AGCAGAAAGCAAAAA GCCGGCC GACT GGCCGGC AGGGGATCAGAACTC AHA_0411 436537 - 435464 - | outer membrane protein murP 438093 - 436639 - | N-acetylmuramic acid phosphotransfer permease murQ 439089 - 438193 - | N-acetylmuramic acid-6-phosphate etherase TERM 530 439334 - 439315 - R 100 -16.4 -5.10461 | GTCAGCCAATAAAAA GCCCCGGC AAGG GCCGGGGC TGCAGATACGGGGCT AHA_0414 439607 - 439353 - | hypothetical protein AHA_0415 440436 - 439717 - | multiple drug resistance protein MarC TERM 531 440557 - 440539 - R 100 -13.1 -4.81551 | CAGCCATATGAAAAA GCCCCGC ACTGG GCGGGGC TCGGAATGGTTCAGG AHA_0416 441884 - 440568 - | major facilitator transporter AHA_0418 442132 - 442803 + | hypothetical protein AHA_0417 444002 - 442800 - | regulatory components of sensory transduction system TERM 532 443958 - 443979 + gT 70 -9.3 -3.64487 | opp_overlap 443960 ACTCTTGGTTGAACA GATCGGGCC TGAG GGCCCGGAC TTGTTGCAGATGTGC AHA_0419 446607 - 443941 - | hybrid sensory kinase TERM 533 444204 - 444238 + gr 91 -14.2 -3.01712 | overlap 444214 CGGCAGGGGCCGGCA GCAGCGTCAGCAGGCC GGC GGCCAGTTGCTGCTGC TGTTGCAACCCCAGC TERM 534 445813 - 445854 + gr 74 -10.1 -3.64371 | opp_overlap 445812 ATCGCCATAGAGCAG GGTGTCGAGCTGGTGATCG ACCT CGAACAGCAGCTCTATGCC TTTGGCCTCTGCCTT AHA_0420 447678 - 446608 - | TorS-related protein AHA_0421 448059 - 447685 - | sigma-B regulator RsbS AHA_0422 449460 - 448069 - | chemotaxis protein TERM 535 448318 - 448303 - GH 71 -10.4 -3.21416 | overlap 448306 GATGTCCAGTACGAA GACCCG GGCC CGGGTC TCGGCAATCTTGGTG TERM 536 450046 - 450021 - gR 81 -12.5 -3.14051 | opp_overlap 450045, overlap 450019 CCAGTTGCAGCAACA GGGCCAGCCGC TGTC GCGGATAGCCC TCGAACTGGGTTACG AHA_0424 449431 - 450123 + | AraC family transcriptional regulator AHA_0423 450508 - 450089 - | hypothetical protein TERM 537 450676 - 450698 + G 76 -9 -3.98282 | overlap 450679 GGTTTCCGGTGCCGG CATGGGGCAG GAT CGGCCCCCTG TTTCCTTCATGTCAC aphA 450541 - 451434 + | acid phosphatase/phosphotransferase TERM 538 451483 - 451457 - T 100 -22.4 -4.7629 | opp_overlap 451457 CCATGAATGGAAAAA GGGCCGGATCCT GTC AGGATCCGGCCC TTCTTTTGGGCGTCT TERM 539 451457 - 451483 + T 100 -22.4 -4.18908 | opp_overlap 451457 CCATGAATGGAAAAA GGGCCGGATCCT GTC AGGATCCGGCCC TTCTTTTGGGCGTCT AHA_0426 452342 - 451497 - | zinc protease AHA_0427 452713 - 452450 - | hypothetical protein TERM 540 453612 - 453628 + G 74 -13.7 -2.83012 | overlap 453601 GTGGCCCGCCCAGGT GGCCGAG CGG CTCGGCC TCTCCTGGTCCGATT AHA_0428 452830 - 453708 + | hypothetical protein TERM 541 453730 - 453746 + F 100 -15.1 -4.77036 | TGATTTCATTGACCG GGGCCGC GCT GCGGCCC TTTTTCATGGTGACG AHA_0429 453826 - 454347 + | acetyltransferase AHA_0430 454650 - 454474 - | hypothetical protein TERM 542 455035 - 455020 - R 72 -4 -4.79223 | opp_overlap 455020 CGACATGAGTAAAAA GCAAAC AATT ATTTGC AGTTTTTCCTTGAGG TERM 543 455089 - 455072 - R 100 -12.7 -4.82901 | opp_overlap 455072 TGTCGGCCACAAAAA GGGCTCC CGAG GGAGCCC TTTTTCATCACCAGG TERM 544 455072 - 455089 + r 100 -12.7 -4.72272 | opp_overlap 455072 TGTCGGCCACAAAAA GGGCTCC CGAG GGAGCCC TTTTTCATCACCAGG AHA_0431 456399 - 455122 - | NhaP-type Na+/H+ and K+/H+ antiporters metH 456603 - 460286 + | B12-dependent methionine synthase AHA_0433 460466 - 461422 + | ribosomal protein S6 modification protein TERM 545 461446 - 461474 + F 100 -15.4 -4.64598 | gap 1, opp_overlap 461450 461452, overlap 461450 TTGCCGCCACTCCAT CACACAGGGCGCC TTCG GGCGCCCTGT-TG TTTTTGGGCTCATTG TERM 546 461471 - 461450 - f 91 -17.3 -2.79796 | opp_overlap 461450 461446, overlap 461452 CGCCACTCCATCACA CAGGGCGCC TTCG GGCGCCCTG TTGTTTTTGGGCTCA TERM 547 461450 - 461471 + F 100 -17.3 -4.42748 | opp_overlap 461450 461452, overlap 461446 CGCCACTCCATCACA CAGGGCGCC TTCG GGCGCCCTG TTGTTTTTGGGCTCA TERM 548 461469 - 461452 - f 86 -14.1 -2.94747 | opp_overlap 461450 461446, overlap 461450 CCACTCCATCACACA GGGCGCC TTCG GGCGCCC TGTTGTTTTTGGGCT TERM 549 462043 - 462099 + G 74 -12.7 -3.34398 | overlap 462042 462043 462044 462093 CCCTGAGTGCGCCCA TCGGCCGCAAGGCCGGGTTGCTGCTGG CCA CCGTCTGCTATCTGGCCGTGGGGCCGC TGTTTGCCACCCCGC TERM 550 462044 - 462098 + G 80 -16.2 -2.60496 | overlap 462042 462043 462043 462093 CCTGAGTGCGCCCAT CGGCCGCAAGGCCGGGTTGCTGCTGG CCA CCGTCTGCTATCTGGCCGTGGGGCCG CTGTTTGCCACCCCG TERM 551 462398 - 462425 + G 85 -15 -3.62572 | gap 1 CGTCAATGGCTACCT CACCATGGACACC CTG GGTG-CCATGGTG TTTGGCATCGTCATC brnQ-1 461811 - 463145 + | branched-chain amino acid transport system II carrier protein TERM 552 463148 - 463175 + T 83 -14.2 -2.71364 | opp_overlap 463154, overlap 463154 GAGCGCGGCCTGAAT GCAAAACCGGCC TTTT GGCCGGTTTTGG TGGTTGAAACAATGA TERM 553 463169 - 463154 - T 93 -11.8 -4.27316 | opp_overlap 463148 463154 GGCCTGAATGCAAAA CCGGCC TTTT GGCCGG TTTTGGTGGTTGAAA TERM 554 463154 - 463169 + T 93 -11.8 -4.3534 | opp_overlap 463154, overlap 463148 GGCCTGAATGCAAAA CCGGCC TTTT GGCCGG TTTTGGTGGTTGAAA TERM 555 463189 - 463216 + T 100 -14.2 -4.7254 | opp_overlap 463192 463195, overlap 463192 GGTGGTTGAAACAAT GAACAAGGCGCC CTCG GGCGCCTTGTTG TTTTTACTCCCGCAT TERM 556 463213 - 463192 - T 100 -15.9 -3.61652 | opp_overlap 463189 463192, overlap 463195 GGTTGAAACAATGAA CAAGGCGCC CTCG GGCGCCTTG TTGTTTTTACTCCCG TERM 557 463192 - 463213 + T 100 -15.9 -4.47707 | opp_overlap 463192 463195, overlap 463189 GGTTGAAACAATGAA CAAGGCGCC CTCG GGCGCCTTG TTGTTTTTACTCCCG TERM 558 463210 - 463195 - T 90 -11.8 -3.93237 | opp_overlap 463192 463189, overlap 463192 TGAAACAATGAACAA GGCGCC CTCG GGCGCC TTGTTGTTTTTACTC AHA_0435 464431 - 463220 - | sensory transduction protein kinase TERM 559 463915 - 463944 + g 80 -16.5 -2.62184 | gap 1 GGGTGAGGTGGGCGA CCC-GCTGCTGCAG TCG CTGCAGCGGCCGGG TGATGTGGCGCACCA AHA_0436 465746 - 464475 - | response regulator TERM 560 465691 - 465728 + gH 91 -11.4 -4.34402 | AAAATGGTACAGCTG GGTCCATAGTTAAACC TCGCAC GGTTTGACCATGGGCC TTTTGCTATGACACG AHA_0437 465736 - 466215 + | hypothetical protein TERM 561 466800 - 466777 - g 75 -3 -4.88405 | overlap 466772 466780 466781 AACGGTGAAATAAAA CCAGGGACAG CGTC CAATACCTGG TGTTATCCGACCAAT AHA_0438 466510 - 467991 + | hemolysin TERM 562 468016 - 468032 + F 100 -15.1 -4.17309 | opp_overlap 468016 GTTGTGGTAATAGAA CCGGGCC TCT GGCCCGG TTGTTGTTTGTACTG TERM 563 468032 - 468016 - f 95 -15.1 -3.65812 | opp_overlap 468016 GTTGTGGTAATAGAA CCGGGCC TCT GGCCCGG TTGTTGTTTGTACTG AHA_0439 468494 - 470485 + | thiamine biosynthesis protein ThiC AHA_0440 470482 - 472098 + | thiamine monophosphate synthase thiF 472161 - 472919 + | thiazole biosynthesis adenylyltransferase ThiF TERM 564 472967 - 472946 - gf 95 -12.9 -4.07975 | CAACTCAACGATAAA GCCCAGCCG CTGG CGGCGGGGC AGAGTGTCGCCGACC thiS 472889 - 473122 + | thiamine biosynthesis protein ThiS TERM 565 473657 - 473702 + G 73 -10.9 -3.59979 | GGCCAATGTGCCGGT GGTGGTGGATGCGGGGATCGG TGCG CCGAGCCACGCCGCCGCTGCC TTTGAACTGGGCGCC thiG 473124 - 473891 + | thiazole synthase thiH 473927 - 475198 + | thiazole biosynthesis protein ThiH TERM 566 475198 - 475213 + F 81 -11.8 -3.57462 | CTTCCTGGGTCGATA GGGGCG GCTA CGCCCC TTTGCCGGTGGCATC TERM 567 475246 - 475272 + F 71 -10.1 -3.53444 | overlap 475247 GGCGTTCAGCCAGAC TCCGAGCCTGT GGCGA GCAGGCTCGGC TTTGCCGGGCAATCG TERM 568 475247 - 475271 + F 79 -13.6 -2.71924 | overlap 475246 GCGTTCAGCCAGACT CCGAGCCTGT GGCGA GCAGGCTCGG CTTTGCCGGGCAATC TERM 569 475361 - 475391 + F 70 -5.3 -4.38712 | CGCAAACAATTTTAC GCTGTGTTGCCGC TAGGT GAGGTCACGCAGC TTTTCTCCCAATGAC TERM 570 475983 - 475998 + F 83 -11.8 -3.73414 | GTTTTTGGGCCGATA GGGGCG GCCA CGCCCC TTTGCCTGTGGTATC AHA_0445 476309 - 478207 + | hypothetical protein AHA_0446 479021 - 478359 - | putative acetyltransferase TERM 571 479062 - 479080 + H 79 -7.4 -4.4009 | TACCCTAACGGAATC GGGTGG AGCCTGG CCACCC TTTTGTGCCCTCCGC TERM 572 479136 - 479146 + H 77 -8.2 -4.13246 | CGGTGGGCGCATCGA CCCC GTA GGGG TTTGTCTCTAGCATA AHA_0447 479239 - 479820 + | hypothetical protein TERM 573 479839 - 479874 + T 100 -25 -2.73364 | opp_overlap 479842, overlap 479842 GACGCGACCGTTCAA GAAGAGGGTTGAGTGC CTGT GCACTCAACCCTCTTC TCATTCCAGTCCCGC TERM 574 479871 - 479842 - T 100 -20.9 -3.62597 | opp_overlap 479839 479842 GCGACCGTTCAAGAA GAGGGTTGAGTGC CTGT GCACTCAACCCTC TTCTCATTCCAGTCC TERM 575 479842 - 479871 + T 100 -20.9 -3.51825 | opp_overlap 479842, overlap 479839 GCGACCGTTCAAGAA GAGGGTTGAGTGC CTGT GCACTCAACCCTC TTCTCATTCCAGTCC AHA_0448 480315 - 479899 - | acetyltransferase AHA_0449 480745 - 480428 - | hypothetical protein AHA_0450 481080 - 481985 + | GGDEF family protein TERM 576 482333 - 482344 + F 78 -2.2 -5.26316 | overlap 482310 482309 TGATCATGTTGATCG CAGG CGGG CTTG TTTTTTCTACGATCC TERM 577 483172 - 483145 - g 71 -9 -3.78934 | TGCGGCGCAGAAGAA GCGCTGTCAGGC GAGC GCCGACCAGCGC GCCAAGCGGATCATC AHA_0451 482444 - 483718 + | serine transporter TERM 578 483763 - 483744 - T 100 -15 -4.78149 | opp_overlap 483744 CGCACAAGTCAAAAA GGGCGACC CATG GGTCGCCC TTTTTCTTGGTGTTG TERM 579 483744 - 483763 + T 100 -15 -5.19251 | opp_overlap 483744 CGCACAAGTCAAAAA GGGCGACC CATG GGTCGCCC TTTTTCTTGGTGTTG AHA_0452 484489 - 483782 - | protein ExoD TERM 580 484324 - 484286 - G 72 -7.2 -4.21908 | opp_overlap 484308, overlap 484291 GAGCAGCACGCAAAA CAGCAGCATGCCCTGTTC GCC GACCAGGGCCAGCATCTG GCGCAGGCTGATATG TERM 581 485251 - 485285 + G 76 -7.8 -4.24948 | gap 1, overlap 485251 GCGGCGAGCTGGTGA CC-CAGTGGCAGGCC AATATC GGCCTGACCCTGCGG TTTTGAGTCTGGTGC AHA_0453 484671 - 485291 + | hypothetical protein TERM 582 485437 - 485449 + G 70 -10.5 -3.6682 | GGTCATGCGTTTCGT CGGCG AGC CGCCG TTTCCCTCCCTCGCC TERM 583 485743 - 485773 + G 78 -10.4 -4.03234 | gap 1, opp_overlap 485732 485741 CGAACCGGACAATCT GCCCAGCCAGCGG CTGTTT CGGC-GGCTGGGC TTTGTCTGGCAGCAG AHA_0455 485288 - 485839 + | acetyltransferase AHA_0454 486125 - 485820 - | hypothetical protein TERM 584 486331 - 486345 + G 73 -11.4 -3.59262 | CTGTTTCATCTGCGC GCGCAG ATC CTGCGC TTTGGCGATCTGCGC AHA_0457 486247 - 486612 + | putative transcriptional regulator AHA_0456 487043 - 486609 - | acetyltransferase TERM 585 487162 - 487141 - R 100 -15.9 -4.77567 | opp_overlap 487143 ACCCCCATAACAAAA CAGGCGACC CGCA GGTCGCCTG TTGCCGTTAGCCGGC TERM 586 487143 - 487160 + r 81 -12.7 -3.09492 | opp_overlap 487141 CCCCATAACAAAACA GGCGACC CGCA GGTCGCC TGTTGCCGTTAGCCG AHA_0458 487858 - 487169 - | hypothetical protein AHA_0459 488908 - 487871 - | fucose 4-O-acetylase TERM 587 488454 - 488407 - G 76 -12.6 -3.46602 | gap 1 GCCCGTAGAGCAGAA CGCCCAG-CAGCAGGGCCAGCCG GGG CAGGCGGGCCTGCTGGCAGAGCG CCAGGATCAGCACCG AHA_0460 489720 - 489085 - | PepSY-associated TM helix family protein TERM 588 489142 - 489163 + g 70 -10.1 -3.63515 | gap 1 CAGCAGGGCGATGCC GC-GCGCGGC CGG GCCGTGCAGC TTGTTCCACATCAGC TERM 589 489557 - 489581 + g 71 -12.7 -3.06696 | GACTTTTCGGTGTGG GGGCCGGGCAG CGG CAGCACGGCCC TGTGTTGCAGCCAGA TERM 590 489652 - 489670 + g 73 -8.8 -4.02817 | AAAGCCGGCCCAGGC GTGGATGC GGC GCACCCAC TTGTTGTTGTGCAGG TERM 591 489749 - 489726 - R 100 -16.8 -4.82901 | GGTGCTTCATAAAAA TCTGGCCAGC TGAA GCTGGCCAGA GGGATCGGGAAAAGG AHA_0461 491813 - 489771 - | TonB-dependent siderophore receptor AHA_0462 492951 - 492040 - | hypothetical protein TERM 592 492633 - 492613 - G 74 -12.5 -3.25823 | opp_overlap 492610 GTCGTCGGACAGGAA TCCGGCCCC GAC GGGGTCGGA CACTATGCTGAAAAT TERM 593 493050 - 493023 - R 100 -19.8 -4.18494 | overlap 493025 GACGGGGATGCAAAA GAGCGCGCCGGC ATCA GCCGGCGCGCGC AGTGCAGAGGGGCCC TERM 594 493048 - 493025 - R 100 -21 -3.69216 | overlap 493023 CGGGGATGCAAAAGA GCGCGCCGGC ATCA GCCGGCGCGC GCAGTGCAGAGGGGC AHA_0463 494283 - 493069 - | hypothetical protein glpX 494354 - 495364 + | fructose 1,6-bisphosphatase II TERM 595 495396 - 495412 + F 100 -13.7 -5.25699 | opp_overlap 495396 TGCTGAACGACCAAA GCCCGAC GCT GTCGGGC TTTTTGTTGTCTGCT TERM 596 495412 - 495396 - f 93 -13.7 -3.84246 | opp_overlap 495396 TGCTGAACGACCAAA GCCCGAC GCT GTCGGGC TTTTTGTTGTCTGCT AHA_0465 495522 - 495773 + | proteinase inhibitor TERM 597 495916 - 495875 - T 91 -17.5 -2.78073 | opp_overlap 495886, overlap 495886 ACCATTCGGAACAAT CCCAATAAAAAGAGGCCGC AACT GCGGCCTCTTTTTATTTCG TGACGAACGGACGTC TERM 598 495905 - 495886 - T 100 -15 -5.10208 | opp_overlap 495886, overlap 495875 CAATCCCAATAAAAA GAGGCCGC AACT GCGGCCTC TTTTTATTTCGTGAC TERM 599 495886 - 495905 + T 100 -15 -5.33405 | opp_overlap 495886 495875 CAATCCCAATAAAAA GAGGCCGC AACT GCGGCCTC TTTTTATTTCGTGAC AHA_0466 497093 - 495930 - | HemY protein AHA_0467 498180 - 497104 - | putative uroporphyrin-III C-methyltransferase hemD 498911 - 498177 - | uroporphyrinogen-III synthase hemC 499855 - 498908 - | porphobilinogen deaminase TERM 600 501115 - 501140 + G 76 -8.2 -4.128 | TCCATCGGCGACATG CAGCGGCTCG ATCTGG TGCGCCGCTG TTTCTATCTGAAGGT TERM 601 502368 - 502392 + G 70 -7.8 -3.97307 | overlap 502378 502381 CGGCATCGTCGACGC CTACGCCAGC GAGGG GCTGGTGCAG TTCTTCTTCGATACC cyaA 500161 - 502695 + | adenylate cyclase TERM 602 502779 - 502798 + T 95 -15 -3.70902 | opp_overlap 502779 CATATCGAATGAAAA CGGCCTGC ATCT GCAGGCCG TTTGGCTATCCGCGG TERM 603 502798 - 502779 - T 100 -15 -4.44548 | opp_overlap 502779 CATATCGAATGAAAA CGGCCTGC ATCT GCAGGCCG TTTGGCTATCCGCGG AHA_0471 503490 - 502819 - | carboxylesterase 2 AHA_0472 503801 - 503487 - | protein CyaY lysA 504072 - 505322 + | diaminopimelate decarboxylase TERM 604 505450 - 505462 + G 74 -4.8 -4.58395 | overlap 505429 GGTGGTGGATGGCGT CACC CAGAA GGTG TTTTTCAGCAATGAG dapF 505388 - 506218 + | diaminopimelate epimerase TERM 605 506260 - 506274 + F 87 -8.5 -4.62069 | CCAAGCACTAATGTC GGGGC CTTGT GCCCC TTTTTCGGATGGACC AHA_0475 506329 - 506979 + | hypothetical protein xerC 506972 - 507949 + | tyrosine recombinase XerC TERM 606 507973 - 507951 - f 75 -11.3 -3.41693 | gap 1, overlap 507954 CGGACGACGAATGAA GAGGGCCGGG CCCG CCCGGCC-TC GACAAGAGGAGATAC TERM 607 507971 - 507954 - f 81 -14.1 -2.56164 | overlap 507951 ACGACGAATGAAGAG GGCCGGG CCCG CCCGGCC TCGACAAGAGGAGAT TERM 608 508083 - 508061 - g 76 -12.6 -3.4072 | CACCCTCTATGACAA CGGCCCGGCC ATC GAGCGGGCCG AGCAGTGGATGCTGA AHA_0477 507990 - 508700 + | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein AHA_0478 509209 - 508799 - | hypothetical protein TERM 609 509116 - 509136 + g 71 -9 -3.68351 | gap 1, overlap 509116 GCCACCCCGGGCTGG CCC-CCAGC AGCT GCTGGCGGG TTTCAATGGTCGCGG AHA_0479 510768 - 509242 - | small conductance mechanosensitive ion channel (MscS) family protein AHA_0480 510884 - 511297 + | hypothetical protein AHA_0481 512077 - 511307 - | glutamine amidotransferase, class I TERM 610 512430 - 512415 - R 93 -11.8 -4.34402 | opp_overlap 512412 GGCCGGATAGCAAAA GGGGCC CGCA GGCCCC TGGTCGTGTCAGGCG AHA_0482 513248 - 512439 - | phosphatase YidA AHA_0483 515047 - 513353 - | hypothetical protein TERM 611 515535 - 515573 + G 81 -15.1 -3.02144 | opp_overlap 515557 GTCAGCAGGCGGTGC TGGCCCGAGCCAGGGCC CAACA GGCACAGGCGCGGGCCG TCTTGGCCCGGCTGA AHA_0484 515309 - 516283 + | membrane-fusion protein TERM 612 516311 - 516325 + G 73 -7 -4.38712 | overlap 516305 516301 516312 GGCGCTGGGGGTGAG CCGCCG TTT CGGCGA TTTTCTGGCGGTGGA AHA_0485 516276 - 517205 + | ABC-type multidrug transport system, ATPase component AHA_0486 517312 - 518406 + | ABC-type multidrug transport system, permease component AHA_0487 519641 - 518484 - | competence/damage-inducible protein CinA TERM 613 519112 - 519084 - G 76 -6.6 -4.4715 | gap 1 GCCGAAGGTATAAAA GCGGCGCAGTTCG GTGT CGGTCTGCGC-GC CAGCCAGCGCCTTGA AHA_0488 521000 - 519702 - | HD-GYP domain-containing protein metA 521085 - 522038 + | homoserine O-succinyltransferase AHA_0490 522619 - 522047 - | protein tyrosine phosphatase TERM 614 522589 - 522603 + g 86 -8.5 -4.65895 | opp_overlap 522588, overlap 522580 CAATGGCGAGGCAAG CCGGG CTTGA CCCGG TTTTTGAGTGCGCCA TERM 615 522703 - 522691 - H 74 -2 -5.07567 | GCAGAGTCTAAAAAA TTGA GCGGT TCAA GGAGTAAAGATGAGA AHA_0491 522713 - 523183 + | AsnC family transcriptional regulator TERM 616 523204 - 523229 + T 100 -11.9 -4.65916 | opp_overlap 523209, overlap 523209 CGTCTGCCTCCTACA AAAAACCCGCC AATC GGCGGGTTTTG TTTTATTGCGCTCAG TERM 617 523224 - 523209 - T 100 -11.8 -5.24129 | opp_overlap 523204 523209 GCCTCCTACAAAAAA CCCGCC AATC GGCGGG TTTTGTTTTATTGCG TERM 618 523209 - 523224 + T 100 -11.8 -5.27476 | opp_overlap 523209, overlap 523204 GCCTCCTACAAAAAA CCCGCC AATC GGCGGG TTTTGTTTTATTGCG AHA_0492 525205 - 523241 - | sulfatase TERM 619 524989 - 524945 - G 70 -12.1 -3.16191 | gap 2 CCAGACCCGGATGAA CTGCAGCCAGGCACGGCCCAC GGCAT GGGGGCCG-GCC-AGCAGCAG GGTGAACACGGCGGG TERM 620 525172 - 525160 - G 84 -2.6 -5.30155 | CGATCAATGAAAAAA CGGC GATGG GCCA AAACGGTCCCAGCCA TERM 621 525227 - 525246 + H 89 -9.2 -4.63863 | TCCTACAAGCCTGTT TGCACCCG TCCA CGGGCGCA TTGTTTTTATATTGC AHA_0493 525465 - 525722 + | hypothetical protein TERM 622 525849 - 525874 + F 95 -8.2 -5.02074 | GGCTTCGCCTCTGAG GGCTTGCCGC CACCGC GCCGCAGGCC TTTTTTGCAGCCTGA AHA_0494 525968 - 527935 + | TonB-dependent copper receptor TERM 623 528080 - 528106 + G 75 -12.2 -3.63569 | overlap 528083 CAAGGAACGTTGCGC CATGGCGGCCTT ATC GGGGCCGCCCTG TTATTGACGGCTTGC TERM 624 529642 - 529660 + G 70 -11.6 -3.23216 | CGTGACGGTGGATTT GCCGCCGC TGA GCGGCCGC TTCCTGCTGGTGCGC AHA_0495 528005 - 529678 + | glycosidase TERM 625 529716 - 529698 - T 100 -11.7 -5.06414 | opp_overlap 529698 GGTTGGCAACAAAAA GGGCTCC GTGAT GGAGCCC TTTTTCATGGGGGAA TERM 626 529698 - 529716 + T 100 -12.4 -4.72272 | opp_overlap 529698 GGTTGGCAACAAAAA GGGCTCCG TGA TGGAGCCC TTTTTCATGGGGGAA AHA_0496 530263 - 529733 - | Mg2+ transporter AHA_0497 531733 - 530291 - | hypothetical protein AHA_0498 531920 - 532378 + | Pab N-terminal acetyltransferase AHA_0499 532393 - 532638 + | hypothetical protein AHA_0500 532695 - 533441 + | NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg TERM 627 533461 - 533488 + T 81 -8.4 -4.28018 | opp_overlap 533465, overlap 533463 533465 533465 TGCAGCTGACGAAAT AAAAGAGGCTCC CAAG GGAGCCTCTCTG TTTTGGTGGCCTCTT TERM 628 533463 - 533486 + T 79 -11 -3.73756 | opp_overlap 533465, overlap 533461 533465 533465 CAGCTGACGAAATAA AAGAGGCTCC CAAG GGAGCCTCTC TGTTTTGGTGGCCTC TERM 629 533484 - 533465 - T 100 -13.6 -4.93877 | opp_overlap 533463 533461 533465 533465 GCTGACGAAATAAAA GAGGCTCC CAAG GGAGCCTC TCTGTTTTGGTGGCC TERM 630 533465 - 533484 + T 88 -13.6 -3.44672 | opp_overlap 533465, overlap 533463 533461 533465 GCTGACGAAATAAAA GAGGCTCC CAAG GGAGCCTC TCTGTTTTGGTGGCC AHA_0501 535107 - 533503 - | cytosol non-specific dipeptidase TERM 631 535327 - 535353 + H 91 -9.5 -4.64676 | overlap 535330 GGGATCTGCACCAAT CTGGCAAGTTG GCCTG CAACTTGCTGG TTTTATTGCCAATGA AHA_0502 535441 - 535893 + | hypothetical protein TERM 632 536045 - 536025 - T 100 -9 -5.46657 | gap 1, opp_overlap 536025 CACGGCAACAAAAAA GGGAG-GGC GGCT GCCACTCCC TTGTTGACCGGACGG AHA_0503 536673 - 536092 - | hypothetical protein TERM 633 536453 - 536491 + g 78 -6.7 -4.59773 | gap 2 GCCAGGTTGGTGACC TGCTCACCGGCGACGATGT CGA ACGCC-TCGCCGGCG-GCA TTTTTCAGGCTGACC TERM 634 536814 - 536776 - H 88 -13.2 -3.40775 | gap 2, overlap 536762 536774 AGCGGCACGGAAACA GGGGCGGCGCCGCACG ACTTCCTTA CG-GCGGC-CCGCCCC CCGCTGCGCAATCTG AHA_0504 536885 - 538060 + | NADH-dependent iron-containing alcohol dehydrogenase TERM 635 538234 - 538216 - T 100 -10.2 -5.9873 | opp_overlap 538216 CGAGCAGAAAAAAAA CGCCCCGA TCA TTGGGGCG TTTTGCATGGTGTCA TERM 636 538216 - 538234 + T 93 -12.4 -4.22652 | opp_overlap 538216 CGAGCAGAAAAAAAA CGCCCCGA TCA TTGGGGCG TTTTGCATGGTGTCA AHA_0505 538963 - 538265 - | glutathione S-transferase III TERM 637 538988 - 538968 - R 100 -14 -5.00616 | opp_overlap 538967 CCGCTGGCCAAAAAA GAGCGGGC TGGAT GCCCGCTC CTGCGTTGACTGACT AHA_0506 540271 - 539003 - | O-acetylhomoserine sulfhydrylase MetY AHA_0507 540604 - 540428 - | hypothetical protein TERM 638 540685 - 540672 - H 72 -2.4 -4.86621 | overlap 540673 ATGCGGAAGTAAAAA CTGA TGACTT TCAG CAACAGGATTTCCCC AHA_0508 540675 - 542438 + | solute-binding family 5 protein AHA_0509 542474 - 542869 + | thioesterase family protein TERM 639 543349 - 543303 - g 76 -10.9 -3.72576 | gap 2, overlap 543304 543324 GTCTGGCTTACCAAA CGGGCGGCCGAGCT--GGGCAAA CTG TTTGCCCAGAGCCCGGCCGAACA GAAGGCGGCCAAGGG AHA_0510 542901 - 543614 + | hypothetical protein TERM 640 543658 - 543631 - T 76 -9.8 -3.78775 | opp_overlap 543635, overlap 543635 CGCGGCAGTATCAAA GCAAGGGGCCCA GATA TGGGCCCCTTTT TATTTTGGTTATTGT TERM 641 543635 - 543654 + T 100 -15 -5.54338 | opp_overlap 543631 543635 GCAGTATCAAAGCAA GGGGCCCA GATA TGGGCCCC TTTTTATTTTGGTTA TERM 642 543654 - 543635 - T 95 -15 -3.58162 | opp_overlap 543635, overlap 543631 GCAGTATCAAAGCAA GGGGCCCA GATA TGGGCCCC TTTTTATTTTGGTTA AHA_0511 544422 - 543679 - | lipase chaperone, putative AHA_0512 545420 - 544419 - | lipase TERM 643 545370 - 545352 - G 85 -14.6 -3.61715 | CATCCTTGTGAATAA GGTTGCCG CAG CGGCAACC ACCGGCCTCATGCCA TERM 644 545458 - 545479 + rH 72 -11.5 -3.04144 | opp_overlap 545458 GACAGATTCAAAAAA GCCCTACCC ATAT GGGCAGGGC TGTTGGCGGTGCCGG TERM 645 545479 - 545458 - RH 100 -13.7 -5.14477 | opp_overlap 545458 GACAGATTCAAAAAA GCCCTACCC ATAT GGGCAGGGC TGTTGGCGGTGCCGG AHA_0513 545622 - 545500 - | hypothetical protein AHA_0514 545621 - 546046 + | hypothetical protein AHA_0515 546068 - 546682 + | superoxide dismutase (Mn) TERM 646 546707 - 546736 + T 76 -12.1 -3.03124 | opp_overlap 546710, overlap 546710 546712 ATACCGAGCCCAATG AAAGAGACCCGCC TGTT GGCGGGTCTCTGC TATTGAGGGGTCAGC TERM 647 546710 - 546733 + T 95 -18.2 -2.74192 | opp_overlap 546710, overlap 546707 546712 CCGAGCCCAATGAAA GAGACCCGCC TGTT GGCGGGTCTC TGCTATTGAGGGGTC TERM 648 546733 - 546710 - T 100 -18.2 -3.91911 | opp_overlap 546710 546707 546712 CCGAGCCCAATGAAA GAGACCCGCC TGTT GGCGGGTCTC TGCTATTGAGGGGTC TERM 649 546712 - 546731 + T 86 -15 -2.9155 | opp_overlap 546710, overlap 546710 546707 GAGCCCAATGAAAGA GACCCGCC TGTT GGCGGGTC TCTGCTATTGAGGGG AHA_0516 547761 - 546736 - | sanA protein TERM 650 547910 - 547885 - R 73 -10.3 -3.33009 | opp_overlap 547888, overlap 547875 547888 TAAAATCGTTCATAA GCAGGGGCGGC CATG GCCGCCCCTTG TCATAGCCGTCTCGT TERM 651 547888 - 547907 + r 100 -16.4 -3.41229 | opp_overlap 547888 547885 547875 AATCGTTCATAAGCA GGGGCGGC CATG GCCGCCCC TTGTCATAGCCGTCT TERM 652 547907 - 547888 - R 90 -16.4 -2.83119 | opp_overlap 547888, overlap 547885 547875 AATCGTTCATAAGCA GGGGCGGC CATG GCCGCCCC TTGTCATAGCCGTCT AHA_0517 550675 - 547928 - | collagenase family protein TERM 653 551017 - 551005 - R 86 -10.5 -4.1899 | GTATCGTAGTGAAAA GCCGC CGG GCGGC AGTTGGCATGGCAAC TERM 654 551135 - 551120 - R 70 -6.8 -4.09685 | overlap 551128 551130 GCTCATCCTGCAAAA GGCGAA CAGA TCCGCC CGAGGTAATGAACAA TERM 655 551161 - 551130 - R 72 -11.6 -3.13141 | overlap 551120 551128 CAAAAGGCGAACAGA TCCGCCCGAGGT AATGAACA ACCCCGGGCAGA TGGCAGGAACGACCC AHA_0518 551550 - 551179 - | putative fimbrial protein TERM 656 552477 - 552463 - H 74 -2.9 -4.91712 | CTGAATTTATAAAAA TCAAA ATGTA TTTGA TGTGCATCATATGAG AHA_0519 552789 - 553331 + | fimbrial protein TERM 657 553347 - 553390 + F 79 -11.3 -3.61902 | gap 2 TAGAGTGCCTTAACG TGTGATCAGGGTTGTGGTGGT GCGA ACCACCACAAC-CTCA-CACA TTCTGTCTCCTCACA TERM 658 553610 - 553621 + G 82 -5.8 -4.92385 | TGAAGGGGCGACGGA GGCA TCAC TGCC TTTTATTTCCATGTC TERM 659 553763 - 553775 + G 74 -4.8 -4.56775 | overlap 553757 CAATTTGGGGCTCAC CAGC AGTCA GCTG TTTTTCCAAGACAGT AHA_0520 553413 - 553820 + | hypothetical protein AHA_0521 553888 - 556422 + | outer membrane usher protein AHA_0522 556433 - 557164 + | fimbrial chaperone protein TERM 660 557329 - 557313 - g 82 -3 -5.1971 | gap 1 ATTAAAAATGAAAAA GGCTATG AAAC CA-AGCC GCCATTGGAGTGGGA TERM 661 558151 - 558163 + G 75 -3.3 -4.91109 | CAGCAGGGGCAGATG TGGCC GCG GGCGA TTTTTATGCTACCGC AHA_0523 557169 - 558203 + | fimbrial protein AHA_0524 558215 - 558766 + | fimbrial protein AHA_0525 559452 - 558769 - | hypothetical protein AHA_0526 560009 - 559449 - | transcriptional regulatory protein, C terminal TERM 662 559958 - 559987 + g 81 -6.4 -4.73912 | opp_overlap 559958 TAGAGAGTCGGAATA TTGCCGCGGAGA AAAATA TCTCCTCTGCAA TTTTATAATTTTTGT menE 561717 - 560311 - | O-succinylbenzoate-CoA ligase menC 562657 - 561728 - | o-succinylbenzoic acid (OSB) synthetase menB 563517 - 562657 - | naphthoate synthase AHA_0530 564280 - 563510 - | alpha/beta fold family hydrolase TERM 663 563760 - 563809 + g 70 -12.7 -2.87132 | gap 1 TGGCCCAGGGAGGTG GCGCGCAGCAT-GGCGGCCACGGC CTC GCCGTCGTTGCCAAGGCGGCGGGC TATCTGGCGCGCGCG menD 566000 - 564270 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 664 564501 - 564537 + g 70 -10.1 -3.61715 | overlap 564528 CAGCGCGTCCTGGGT CGGCACCGGCAGCAT GCGAAAG ATGCTGCCGCCGTCG TTGTTGAGCAGGATC TERM 665 565233 - 565191 - G 71 -12.7 -3.05384 | gap 1, overlap 565222 GTTGCGGCCATCGAA GCGCAGCTGG-CTCTGCAGA TCTG CCAGCAGAGGCCAGCCGAGC CGCTCGGCCAGGGCG TERM 666 566054 - 566033 - R 75 -6.5 -4.52703 | overlap 566034 GAAACGATGAGAAAA CGCTATCCC AGCA GGGAGAGCA CGTTGGCGATCTTGT menF 567381 - 566035 - | menaquinone-specific isochorismate synthase TERM 667 566290 - 566260 - G 70 -11.7 -3.14132 | GCGTTCGCGGATGAA GGCCAGCGCCGCC TCGCG GGGGGCGCCGCCC ACTGCGGGGGTGGGG TERM 668 567074 - 567049 - G 73 -13.3 -3.21099 | gap 1, overlap 567050 GCGGGGCAGCACGAA GC-GGCAGGGGC CGA ACCCCTGCCAGC CGGGCTGGGTGGGGT TERM 669 567072 - 567050 - G 71 -13.4 -2.52516 | overlap 567049 CGGGGCAGCACGAAG CGGCAGGGGC CGA ACCCCTGCCA GCCGGGCTGGGTGGG menA 567571 - 568494 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 670 568543 - 568524 - f 90 -10.6 -4.27584 | opp_overlap 568524 ATCGGCAAGGCAAAA GGGCTCCC GGAC GGGGGCCC TTTTTGTTGGTTGGG TERM 671 568524 - 568543 + F 100 -12.8 -5.1963 | opp_overlap 568524 ATCGGCAAGGCAAAA GGGCTCCC GGAC GGGGGCCC TTTTTGTTGGTTGGG AHA_0534 568547 - 568816 + | hypothetical protein TERM 672 568823 - 568870 + T 84 -13.5 -3.14132 | gap 2, opp_overlap 568818 568830 568833, overlap 568833 CAAGCGTAAAGGCGC GCTGAAAC-C-AGGAGGGCTCCC GTGT GGGAGCCCTCCTTGAGTGGCGGC TTGGTGCGGCGCACG TERM 673 568861 - 568830 - T 100 -20.2 -3.5394 | opp_overlap 568823 568833, overlap 568818 568833 AAAGGCGCGCTGAAA CCAGGAGGGCTCCC GTGT GGGAGCCCTCCTTG AGTGGCGGCTTGGTG TERM 674 568833 - 568858 + T 100 -20.5 -3.06133 | opp_overlap 568830 568818 568833, overlap 568823 GGCGCGCTGAAACCA GGAGGGCTCCC GTGT GGGAGCCCTCC TTGAGTGGCGGCTTG TERM 675 568858 - 568833 - T 100 -20.5 -2.90496 | opp_overlap 568833 568823, overlap 568830 568818 GGCGCGCTGAAACCA GGAGGGCTCCC GTGT GGGAGCCCTCC TTGAGTGGCGGCTTG AHA_0535 570293 - 568896 - | propeptide, PepSY amd peptidase M4:PepSY-associated TM helix AHA_0536 570566 - 570961 + | hypothetical protein AHA_0537 571435 - 571145 - | hypothetical protein TERM 676 571500 - 571472 - R 100 -18.9 -2.72745 | opp_overlap 571476 571478, overlap 571476 GGCACGGATAAATAT GAAACAGGCGCCG AAC CGGCGCCTGTGTC GTGAACCTTAGCCCA TERM 677 571476 - 571496 + r 95 -18.3 -2.79831 | opp_overlap 571476 571472, overlap 571478 CGGATAAATATGAAA CAGGCGCCG AAC CGGCGCCTG TGTCGTGAACCTTAG TERM 678 571496 - 571476 - R 100 -18.3 -4.04579 | opp_overlap 571476 571478, overlap 571472 CGGATAAATATGAAA CAGGCGCCG AAC CGGCGCCTG TGTCGTGAACCTTAG TERM 679 571478 - 571494 + r 86 -15.1 -2.94595 | opp_overlap 571476 571472, overlap 571476 GATAAATATGAAACA GGCGCCG AAC CGGCGCC TGTGTCGTGAACCTT AHA_0538 572884 - 571508 - | ATP-independent RNA helicase DbpA TERM 680 573222 - 573238 + H 80 -5.1 -4.89966 | AGCTGTGAAAATAGC CCTTTCA GAC TGAATGG TTTATTTTTAACTAT AHA_0539 573287 - 574654 + | nucleoside permease NupC TERM 681 574679 - 574704 + T 100 -17.7 -5.00616 | opp_overlap 574683, overlap 574683 CCGCTCTCTCCATGA CAAACCCCTGC CTCG GCAGGGGTTTG TTTTTTGGGGCGACA TERM 682 574683 - 574700 + T 100 -12.7 -5.04249 | opp_overlap 574683, overlap 574679 TCTCTCCATGACAAA CCCCTGC CTCG GCAGGGG TTTGTTTTTTGGGGC TERM 683 574700 - 574683 - T 93 -12.7 -3.96148 | opp_overlap 574683 574679 TCTCTCCATGACAAA CCCCTGC CTCG GCAGGGG TTTGTTTTTTGGGGC AHA_0540 575247 - 574747 - | putative hydrolase TERM 684 575153 - 575190 + g 83 -13.3 -3.85698 | GCAGGAATGGTGTGC CACAGGCTGGCGTCGGC CAGG GCCGGCGTCAGCTGGAG TTTGTGGGCGAGCAG TERM 685 575336 - 575314 - R 100 -7.7 -5.15634 | gap 2, opp_overlap 575314 CATTGCAGCAAAAAA CCGGG--GCCC GAT GGGCAGCCCGG TCATTAACTGCGCGG AHA_0541 575894 - 575340 - | cytochrome B TERM 686 575933 - 575913 - R 100 -15.4 -4.03234 | opp_overlap 575926 575927 GTGGCTCCATAGAAA GGGCCGGC AGGAG GCCGGCCC ATGGCCGGATTATTC TERM 687 575926 - 575942 + r 70 -9.3 -3.74361 | opp_overlap 575913, overlap 575927 AAGGGCCGGCAGGAG GCCGGCC CAT GGCCGGA TTATTCGTCGATCTC TERM 688 575927 - 575941 + r 76 -12.8 -2.84134 | opp_overlap 575913, overlap 575926 AGGGCCGGCAGGAGG CCGGCC CAT GGCCGG ATTATTCGTCGATCT AHA_0542 576212 - 575943 - | hypothetical protein TERM 689 576325 - 576305 - R 95 -14 -3.27297 | overlap 576303 AGGTAGGAATGAATA TCCCCGGC TGGAT GCCGGGGA GGGGGTAATCAACTC AHA_0543 576786 - 576334 - | YaiI/YqxD family protein zntB 576898 - 577884 + | zinc transporter AHA_0545 577894 - 578412 + | hypothetical protein TERM 690 578433 - 578418 - T 95 -10.4 -4.54821 | opp_overlap 578418, overlap 578413 ACCGGAATGAGAAAA GGCTCC TGCG GGAGCC TTTTTTGAGCCTGCC TERM 691 578418 - 578433 + T 100 -10.4 -5.03314 | opp_overlap 578418 578413 ACCGGAATGAGAAAA GGCTCC TGCG GGAGCC TTTTTTGAGCCTGCC AHA_0546 578703 - 578455 - | hypothetical protein AHA_0547 579342 - 578767 - | molecular chaperones TERM 692 579043 - 579084 + g 75 -14.3 -2.71011 | opp_overlap 579033 579032 GTAACTGCGCAGCGC CTCGCCTTGGGCGAGGGCG CTTG CCCCCTCGCGAATGGCGAG TGGTTCGAGCCGGAT AHA_0548 581294 - 579339 - | sodium/hydrogen exchanger family protein mtlR 581824 - 581303 - | mannitol repressor protein TERM 693 581846 - 581872 + r 100 -12.3 -4.95155 | overlap 581848 ATTGGGTCCAGCTGA CAGGGAGAGAG TGGGC CTCTCTCCCGG TTTTTATCGTATGAG TERM 694 581848 - 581870 + r 79 -13.5 -2.73099 | overlap 581846 TGGGTCCAGCTGACA GGGAGAGAG TGGGC CTCTCTCCC GGTTTTTATCGTATG AHA_0550 583201 - 581933 - | mannitol-1-phosphate 5-dehydrogenase TERM 695 583001 - 583024 + gr 77 -11 -3.57144 | GTCGGCGAAGGTGAC CTGGTGGCTG GCGT CAGCCAACAG TTTGCCGATGAAGCC AHA_0551 585038 - 583116 - | pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl) TERM 696 584610 - 584598 - GR 71 -9.1 -3.75024 | GCCGATCACGAAGAA GGCGA GGA TCGCC AGCAGCATGCCGATG TERM 697 584722 - 584698 - GR 81 -12.1 -3.53091 | ATCGCCTTGTCGAAA CGCTTGATGGC CCA GCCACCGAGCG GGCCGACCATCATGG AHA_0552 586539 - 585493 - | transport protein AHA_0553 587286 - 586561 - | TetR family transcriptional regulator TERM 698 587317 - 587301 - R 100 -13.7 -5.4505 | opp_overlap 587301 TGGTCCAATAAAAAA GCCCGCA GAG TGCGGGC TTTTTACAAGGTGGG TERM 699 587301 - 587317 + r 100 -13.7 -4.58395 | opp_overlap 587301 TGGTCCAATAAAAAA GCCCGCA GAG TGCGGGC TTTTTACAAGGTGGG rnb 589364 - 587343 - | exoribonuclease II AHA_0555 590364 - 589465 - | chromosome replication initiation inhibitor protein TERM 700 590596 - 590615 + r 100 -10.7 -5.71712 | AGCGAGAACTTTTAA TCCCGGG TCTTAC CCCGGGA TTTTTTTGTGTCGCC AHA_0556 591255 - 590632 - | autoinducer synthesis protein AhyI ahyR 591318 - 592103 + | transcriptional activator protein AhyR TERM 701 592121 - 592106 - f 75 -6.1 -4.67982 | GCTGATGCAATAAAA CCCGA TGATTC TCGGG GCAGAGTGATTGGCT AHA_0558 592316 - 592936 + | arginine exporter protein ArgO AHA_0559 593051 - 595042 + | 2',3'-cyclic-nucleotide 2'-phosphodiesterase TERM 702 595088 - 595070 - T 100 -16 -5.80364 | opp_overlap 595070 ATGGCAATAAAAAAA GCCCTCGC ACT GCGAGGGC TTTTTCATGGGCGGA TERM 703 595070 - 595088 + T 100 -16 -4.72272 | opp_overlap 595070 ATGGCAATAAAAAAA GCCCTCGC ACT GCGAGGGC TTTTTCATGGGCGGA AHA_0560 595584 - 595108 - | surface antigen family protein TERM 704 595718 - 595733 + r 95 -10.4 -4.56597 | overlap 595716 AAACCCTGTCACCGC CGGCTC AGCC GAGCCG TTTTTCCAGCAGCAG AHA_0561 596174 - 595722 - | acetyltransferase AHA_0562 596750 - 596295 - | hypothetical protein TERM 705 596773 - 596756 - R 100 -12.7 -5.40072 | opp_overlap 596756, overlap 596740 CGGCGGGCAAAAAAA CAGGGCC CGCG GGCCCTG TTTCATCAGACAGCT TERM 706 596756 - 596773 + r 86 -12.7 -3.72695 | opp_overlap 596740 596756 CGGCGGGCAAAAAAA CAGGGCC CGCG GGCCCTG TTTCATCAGACAGCT AHA_0563 598605 - 596803 - | aminopeptidase P AHA_0564 599304 - 598639 - | GntR family transcriptional regulator TERM 707 598731 - 598776 + g 74 -14.8 -2.57344 | gap 3, overlap 598731 CCGCCTCGTGCTTGC GGCGGGCGCG-GCACAGCTCCAG CAG CTGG-GC-GTGCTCGCGCTCGGC CTTGTCGACGCCATC TERM 708 598731 - 598777 + g 82 -14.6 -3.29144 | overlap 598731 CCGCCTCGTGCTTGC GGC-GGGCGCG-GCACAGCTCCAG CAG CTGG-GC-GTGCTCGCGCTCGGCC TTGTCGACGCCATCG TERM 709 599452 - 599428 - R 100 -16.5 -5.40072 | CTCTGCTCAAAAAAA TACCGGCCAGC TGG GCTGACCGGTA TGAGATTGGCAGTAA pckA 601105 - 599480 - | phosphoenolpyruvate carboxykinase TERM 710 601228 - 601254 + r 74 -11.6 -3.30854 | opp_overlap 601233, overlap 601218 TTTTTGTTATTTAAG TTAAAGGCGGGT TTT GCCCGCCTTCAA TTAGTGTAACTTGTT TERM 711 601249 - 601233 - R 80 -10.8 -3.76952 | opp_overlap 601228 601218 GTTATTTAAGTTAAA GGCGGG TTTTG CCCGCC TTCAATTAGTGTAAC hslO 602142 - 601255 - | 33 kDa chaperonin HslO AHA_0567 602838 - 602248 - | heat shock protein 15 gspC 602786 - 603709 + | general secretion pathway protein C TERM 712 604664 - 604624 - g 76 -10.9 -3.79906 | overlap 604625 CGAGGCGGACAAGAA GGGCGGCGCGGCCACCACC ACG GGCGGTGGCGGTGCCAGCA TCGGCGGCGGCAAGC TERM 713 604663 - 604625 - g 77 -14.4 -2.87622 | overlap 604624 GAGGCGGACAAGAAG GGCGGCGCGGCCACCACC ACG GGCGGTGGCGGTGCCAGC ATCGGCGGCGGCAAG gspD 603731 - 605764 + | general secretion pathway protein D TERM 714 605798 - 605820 + G 74 -10.5 -3.75153 | ATGGCGTCGACATGC CGGCAGCCC TGCCC GAGCTGCCG TTTGCCTTCGCCCGC gspE 605764 - 607269 + | general secretory pathway protein E TERM 715 607421 - 607441 + G 73 -11.1 -3.62775 | ACCGAGAAGGCCAAG CGCGAGGCG AAC CGCTTCGTG TTGTTCCGCCGTGGT gspF 607271 - 608491 + | general secretion pathway protein F gspG 608607 - 609038 + | general secretion pathway protein G gspH 609202 - 609753 + | general secretion pathway protein H gspI 609750 - 610109 + | general secretion pathway protein I gspJ 610178 - 610807 + | general secretion pathway protein J gspK 610897 - 611922 + | general secretion pathway protein K TERM 716 611965 - 611926 - f 90 -12 -3.9461 | gap 1, overlap 611883 GGCGCCGAATAACAA GGGA-GGCGGGCGACGGCC GTT GGCCAGCTCGCGCCATCCC CCGATTGGACTGCAG gspL 612042 - 613226 + | general secretion pathway protein L gspM 613223 - 613714 + | general secretion pathway protein M TERM 717 613722 - 613754 + F 74 -10.6 -3.60627 | opp_overlap 613720 613718 613717 CCCAATGAAACCACG CGTCCCGAGCAGG-GC CCC GCGCCTGATCGGG-CG TTTGCAGTCGAGTCG gspN 613776 - 614531 + | type II secretion system protein N TERM 718 614560 - 614591 + T 100 -20.2 -3.29511 | opp_overlap 614563, overlap 614563 TGAGCTGGCAAGCAT CAACACCACCCCGC CCCG GCGGGGTGGTGTCG TTATGGGGGCGTGCC TERM 719 614563 - 614588 + T 100 -20.5 -2.82742 | opp_overlap 614563, overlap 614560 GCTGGCAAGCATCAA CACCACCCCGC CCCG GCGGGGTGGTG TCGTTATGGGGGCGT TERM 720 614588 - 614563 - T 100 -20.5 -3.27298 | opp_overlap 614563 614560 GCTGGCAAGCATCAA CACCACCCCGC CCCG GCGGGGTGGTG TCGTTATGGGGGCGT AHA_0580 615503 - 614592 - | LuxR family transcriptional regulator TERM 721 614979 - 614937 - G 75 -11.8 -3.62275 | opp_overlap 614935 614953, overlap 614927 ATGCACCAGTGGAAA CAGCGCCTCCAGCCGGGCCA GCT CGTCACGGCTGAGGGAGCTG CGCTTGTCGAGCCGC TERM 722 615926 - 615887 - g 84 -8.6 -4.52589 | gap 3, overlap 615889 TCGGCCCAGATAAAA GC-GCTGCTGCCGGCCAGC GAAGG GCTGGC-GGC-GCCGCTGC TGGTCAACAACGCCG tyrS-1 615563 - 616831 + | tyrosyl-tRNA synthetase TERM 723 616850 - 616867 + T 100 -12.7 -5.0065 | opp_overlap 616850 ACCCGGGATCGACAA GGGCTGC CTGG GCAGCCC TTTTGTTTATCCGTC TERM 724 616867 - 616850 - T 84 -12.7 -3.35798 | opp_overlap 616850 ACCCGGGATCGACAA GGGCTGC CTGG GCAGCCC TTTTGTTTATCCGTC AHA_0582 617593 - 616925 - | HAD family hydrolase TERM 725 618291 - 618254 - g 76 -13.5 -3.1876 | gap 1, overlap 618255 AACCGGATCGACGAA TTGCTGGCGCGACCCGAT TTT ACCGAGTCGCG-CAGCAT CAGTGCGCTGCTGCT TERM 726 618290 - 618255 - g 83 -17 -2.50935 | gap 1, overlap 618254 ACCGGATCGACGAAT TGCTGGCGCGACCCGAT TTT ACCGAGTCGCG-CAGCA TCAGTGCGCTGCTGC nudE 617780 - 618340 + | ADP-ribose diphosphatase NudE cysQ-1 618378 - 619190 + | 3'(2'),5'-bisphosphate nucleotidase TERM 727 619216 - 619246 + F 100 -25.6 -3.29649 | opp_overlap 619202 619223, overlap 619220 AGGTCATCATTGACG GCAATCAGGCGGCC CAT GGCCGCCTGATTGC TTGGTGTGATCCGCT TERM 728 619220 - 619242 + F 100 -19.2 -3.43785 | opp_overlap 619202 619223, overlap 619216 CATCATTGACGGCAA TCAGGCGGCC CAT GGCCGCCTGA TTGCTTGGTGTGATC TERM 729 619239 - 619223 - f 83 -15.1 -2.73681 | opp_overlap 619220 619216, overlap 619202 CATTGACGGCAATCA GGCGGCC CAT GGCCGCC TGATTGCTTGGTGTG AHA_0585 619602 - 620873 + | serine transporter TERM 730 620924 - 620899 - T 100 -19.1 -4.42806 | opp_overlap 620899 CCAGCCGCAAATAAA GAGAGGCGACC CTGG GGTCGCCTCTC TTGTATCGGTCCGGT TERM 731 620899 - 620924 + T 100 -19.1 -3.52102 | opp_overlap 620899 CCAGCCGCAAATAAA GAGAGGCGACC CTGG GGTCGCCTCTC TTGTATCGGTCCGGT AHA_0586 621285 - 620947 - | protein CsaA TERM 732 621359 - 621385 + r 71 -6.4 -4.25104 | opp_overlap 621339 621359 GCCGTCTTCGGCAAA CGGCCGCCCG GTTACGG CAAGCGGCCG TTTTGCTGGCGCCAG TERM 733 621385 - 621359 - R 74 -10.8 -3.53012 | opp_overlap 621359, overlap 621339 GCCGTCTTCGGCAAA CGGCCGCCCG GTTACGG CAAGCGGCCG TTTTGCTGGCGCCAG AHA_0587 622122 - 621370 - | AraC family transcriptional regulator metJ 622481 - 622158 - | transcriptional repressor protein MetJ metB 622690 - 623853 + | O-succinylhomoserine (thiol)-lyase TERM 734 624674 - 624618 - g 71 -11.3 -3.53012 | overlap 624621 CCGCGCCGGGTGAAA GAAGCGCGCCTGCTGGAGCGCCTGAGC CTC GCCGAAGCGAACGAGCTGGCCCGCCTC GGCTCCTCGGTATTG TERM 735 624671 - 624621 - g 74 -9.4 -3.90744 | overlap 624618 CGCCGGGTGAAAGAA GCGCGCCTGCTGGAGCGCCTGAGC CTC GCCGAAGCGAACGAGCTGGCCCGC CTCGGCTCCTCGGTA metL 623853 - 626321 + | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 736 626364 - 626346 - T 100 -16 -3.64822 | opp_overlap 626346 AGTCGTTCAGTCAAA GAGGCGCC AGT GGCGCCTC TTTTTATTGTTTAGC TERM 737 626346 - 626364 + T 100 -16 -5.38549 | opp_overlap 626346 AGTCGTTCAGTCAAA GAGGCGCC AGT GGCGCCTC TTTTTATTGTTTAGC TERM 738 626946 - 626917 - T 100 -20.9 -2.87132 | opp_overlap 626920 626924, overlap 626924 CGTGCCCTGTAGATA TGACAAAGGGCGC CGAG GCGCCCTTTGTCA TTGAGGGGAGCTTGA TERM 739 626920 - 626943 + T 90 -16.8 -2.71011 | opp_overlap 626917 626924, overlap 626924 GCCCTGTAGATATGA CAAAGGGCGC CGAG GCGCCCTTTG TCATTGAGGGGAGCT TERM 740 626939 - 626924 - T 90 -11.8 -4.04318 | opp_overlap 626924 626920, overlap 626917 TGTAGATATGACAAA GGGCGC CGAG GCGCCC TTTGTCATTGAGGGG TERM 741 626924 - 626939 + T 90 -11.8 -4.05446 | opp_overlap 626917 626924, overlap 626920 TGTAGATATGACAAA GGGCGC CGAG GCGCCC TTTGTCATTGAGGGG ppc 629607 - 626974 - | phosphoenolpyruvate carboxylase argE 630968 - 629823 - | acetylornithine deacetylase argC 631237 - 632244 + | N-acetyl-gamma-glutamyl-phosphate reductase argB 632268 - 633047 + | acetylglutamate kinase TERM 742 633948 - 633933 - gf 71 -5.4 -4.43844 | GGACGAGGCAGAAAA CCGGAT GCAT ATCCAG AACGCCGTACTGCTG argF-1 632968 - 633984 + | ornithine carbamoyltransferase argG 634039 - 635274 + | argininosuccinate synthase TERM 743 635303 - 635321 + F 93 -16 -3.07816 | overlap 635305 CCCGTTGATTCCGTT GAGGGGGC ATG GCCCCCTC TTCCATAGGTCGAGG TERM 744 635305 - 635319 + F 81 -12.8 -3.09878 | overlap 635303 CGTTGATTCCGTTGA GGGGGC ATG GCCCCC TCTTCCATAGGTCGA argH 635484 - 636869 + | argininosuccinate lyase TERM 745 636900 - 636927 + T 74 -11.4 -3.27525 | opp_overlap 636905, overlap 636905 ATTAGAATAAGAACA AAAAACGGCAAC CGAT GTTGCCGTTTTA TTCAATTTACCGACA TERM 746 636905 - 636922 + T 100 -11.3 -4.75309 | opp_overlap 636905, overlap 636900 AATAAGAACAAAAAA CGGCAAC CGAT GTTGCCG TTTTATTCAATTTAC TERM 747 636922 - 636905 - T 100 -11.3 -5.70522 | opp_overlap 636900 636905 AATAAGAACAAAAAA CGGCAAC CGAT GTTGCCG TTTTATTCAATTTAC AHA_0598 637547 - 636990 - | hypothetical protein TERM 748 637105 - 637115 + g 100 -5.4 -6.23545 | ATGAGATAATCAACG GAGA CCT TCTC TTTTTTTTCTTTCAG TERM 749 637564 - 637550 - R 91 -10 -4.54449 | opp_overlap 637550 637552, overlap 637552 ATATGGCATACAAAA GCTCAG CTG CTGAGC TGATTCCTTTTGCAT TERM 750 638254 - 638276 + r 77 -7.8 -4.3534 | opp_overlap 638257, overlap 638262 TGGTCTCTAACGCAG TAACCTGATT CTT AAGCAGGTTA TTTTCCTGCTTGAGC TERM 751 638398 - 638385 - R 70 -3.1 -4.76478 | overlap 638391 GAAAAGAAATTAAAA GACAC ATTA GTATC TAAAAATAGTTTTTA AHA_0599 638906 - 638445 - | hypothetical protein AHA_0600 639379 - 639107 - | hypothetical protein AHA_0601 639769 - 639428 - | integral membrane protein AHA_0602 640356 - 639766 - | maltose O-acetyltransferase AHA_0603 641699 - 640437 - | MgtC/SapB transporter AHA_0604 641909 - 642910 + | sulfate-binding protein AHA_0605 642967 - 643542 + | hypothetical protein TERM 752 643652 - 643675 + F 100 -11.2 -5.81622 | GACGCTCCATTTTTA GGTCTTTTAT TTAT ATAAAAGACC TTTTTTTCATTTTAT cysT 643795 - 644661 + | sulfate/thiosulfate ABC transporter, permease protein CysT cysW 644658 - 645554 + | sulfate/thiosulfate ABC transporter, permease protein CysW cysA 645577 - 646644 + | sulfate/thiosulfate ABC transporter, ATP-binding protein TERM 753 646797 - 646773 - f 80 -9.2 -4.11048 | gap 1 ACAAGATAACAACAA GGCGG-CGGGG AAGG CCCCGACCGGC CGGTCAGCGCAGGAG AHA_0609 646821 - 647768 + | transcriptional regulator CysB-like protein TERM 754 647783 - 647813 + T 100 -18.4 -3.25719 | opp_overlap 647783 647788, overlap 647788 AGGTGGTGCATCAGA GAAAACGGGGAGCC AGT GGCTCCCCGTTTTG TTGATGGTGTCATGC TERM 755 647813 - 647783 - T 95 -18.4 -2.78463 | opp_overlap 647783 647788, overlap 647788 AGGTGGTGCATCAGA GAAAACGGGGAGCC AGT GGCTCCCCGTTTTG TTGATGGTGTCATGC TERM 756 647788 - 647808 + T 100 -18.3 -4.74215 | opp_overlap 647783 647788, overlap 647783 GTGCATCAGAGAAAA CGGGGAGCC AGT GGCTCCCCG TTTTGTTGATGGTGT TERM 757 647808 - 647788 - T 100 -18.3 -4.57353 | opp_overlap 647788 647783, overlap 647783 GTGCATCAGAGAAAA CGGGGAGCC AGT GGCTCCCCG TTTTGTTGATGGTGT AHA_0610 649325 - 647841 - | N-acetylglucosamine-binding protein A TERM 758 649515 - 649532 + r 74 -4.2 -4.68994 | CTCATCGGAGTAGAG CAAACA CTTAAC TGTTTG TTTTTAAATGGTGGT TERM 759 649657 - 649623 - R 100 -31.6 -3.39895 | TTTTTCATCAATGAA GCACGCCCCCGTCAGC CGG GCTGACGGGGGCGTGC GCTGCGACAGGGTAG AHA_0611 651376 - 649679 - | methyl-accepting chemotaxis protein TERM 760 651407 - 651440 + H 72 -2.3 -4.90079 | overlap 651406 651401 651410 651410 651413 TTTCCCGTGCGGGTC TGGTGGTGGCCAGTC CGTT GGCTGGCCCTGATTA TTTTGTTATTAACAT AHA_0612 651672 - 653519 + | oligoendopeptidase F TERM 761 653548 - 653573 + F 100 -19.1 -4.25104 | GAACATGCGTTATGT CAGACCCCTGC CGCG GCAGGGGTCTG TTTTCATGGGAAGGA TERM 762 653854 - 653835 - g 71 -10.7 -3.40403 | opp_overlap 653804 GCGGGCCTATCAGAA TGCCCGC TATCAG GCGGGCA GCATCCTCTTCTCGG AHA_0613 653596 - 654387 + | hypothetical protein AHA_0614 656596 - 654401 - | hypothetical protein AHA_0615 656878 - 657588 + | hypothetical protein AHA_0616 657609 - 658952 + | hypothetical protein TERM 763 658955 - 658993 + T 100 -30.5 -2.87132 | opp_overlap 658958 658961, overlap 658958 658961 GCAGCCGGCCTGATG CAACAAGGGCGCCCCGC AACAG GCGGGGCGCCCTTGTTG TCTGTCAGAGGAGCC TERM 764 658990 - 658958 - T 100 -26.4 -3.05384 | opp_overlap 658955 658958 658961, overlap 658961 GCCGGCCTGATGCAA CAAGGGCGCCCCGC AACAG GCGGGGCGCCCTTG TTGTCTGTCAGAGGA TERM 765 658958 - 658990 + T 100 -26.4 -3.58726 | opp_overlap 658958 658961, overlap 658955 658961 GCCGGCCTGATGCAA CAAGGGCGCCCCGC AACAG GCGGGGCGCCCTTG TTGTCTGTCAGAGGA TERM 766 658987 - 658961 - T 100 -22.3 -3.67597 | opp_overlap 658958 658955 658961, overlap 658958 GGCCTGATGCAACAA GGGCGCCCCGC AACAG GCGGGGCGCCC TTGTTGTCTGTCAGA TERM 767 658961 - 658987 + T 100 -22.3 -3.92996 | opp_overlap 658961 658958, overlap 658958 658955 GGCCTGATGCAACAA GGGCGCCCCGC AACAG GCGGGGCGCCC TTGTTGTCTGTCAGA TERM 768 659004 - 659031 + T 100 -18.4 -5.53991 | opp_overlap 659006 TGTTGTCTGTCAGAG GAGCCGACCGGG CAAG CCCGGCCGGCTC TTTTTTTGCTGGCTG TERM 769 659029 - 659006 - T 90 -17.4 -2.62184 | opp_overlap 659004 TTGTCTGTCAGAGGA GCCGACCGGG CAAG CCCGGCCGGC TCTTTTTTTGCTGGC AHA_0617 662220 - 659059 - | putative Tricorn protease homolog 1 AHA_0618 662465 - 662956 + | ErfK/YbiS/YcfS/YnhG family protein TERM 770 662964 - 662991 + F 100 -13.4 -5.02476 | AGCCCTGACTCTCTG CAGCGCGCCACC TCCG GGTGGCGTTCTG TTTTTTGGGCCCTCT AHA_0619 663105 - 663824 + | AzlC family protein TERM 771 664182 - 664214 + F 95 -15 -3.40071 | AGGCCCGTGATCTTG CATGGCGGATGTCT TCATT GGATATCCGCCATG TTGTGAATGTCACTT TERM 772 664249 - 664237 - f 77 -4.1 -5.0538 | opp_overlap 664239, overlap 664239 TGTCACTTCAAAAAA CACCT CTC AAGTG TGAGGATTTAGCTCC AHA_0620 664285 - 665811 + | hypothetical protein AHA_0621 665849 - 666700 + | pyruvate formate lyase activating enzyme TERM 773 666757 - 666785 + F 81 -3.8 -5.1675 | gap 1, overlap 666757 666760 CTACAAGGCAAGATT G-GACGGCGAACC GAGC GGTTCGGCGTGGC TTTTTTGCTGCCTGA AHA_0622 666893 - 667216 + | hypothetical protein AHA_0623 668182 - 667259 - | LysR family transcriptional regulator TERM 774 668233 - 668216 - R 100 -14.1 -5.38054 | overlap 668201 668197 CGGGACAAACAAAAA GCCCCGC CTGA GCGGGGC TTGCGGGGATCAGCC AHA_0624 669439 - 668243 - | aromatic amino acid aminotransferase AHA_0625 669884 - 669609 - | hypothetical protein TERM 775 669924 - 669909 - H 78 -6.2 -4.71426 | opp_overlap 669907 669909 669910 TCTCGATCAATAAAA CTATAC TGGG GTATAG TATATTGCATTGTCG AHA_0626 669956 - 670915 + | heavy metal transporter TERM 776 670969 - 670942 - T 93 -15.6 -3.01712 | opp_overlap 670943, overlap 670945 670949 TGGCCGCCCGCAACA GCAGGAAGGGGC CAAG GCCCCTTCCTGT TTTTCTGGCTCAGTG TERM 777 670943 - 670968 + T 100 -19.1 -4.88067 | opp_overlap 670942 670945 670949 GGCCGCCCGCAACAG CAGGAAGGGGC CAAG GCCCCTTCCTG TTTTTCTGGCTCAGT TERM 778 670966 - 670945 - T 86 -15.9 -2.73875 | opp_overlap 670943, overlap 670942 670949 CCGCCCGCAACAGCA GGAAGGGGC CAAG GCCCCTTCC TGTTTTTCTGGCTCA AHA_0627 671389 - 670979 - | hypothetical protein TERM 779 672039 - 671988 - g 76 -12.9 -3.40522 | gap 1 AGGCTGGGACGACAA GGTCAACACCCCGGCCGCGGCCGA CGGCT TCGGCC-CGAGCTGGGTGGTGCCC CTTAGCAAGCTGGAA AHA_0628 671620 - 675708 + | pullulanase TERM 780 675798 - 675823 + T 100 -16.1 -5.35815 | opp_overlap 675798 GAGAGAGTAAGCAAA GCGCGACTGCC GACC GGCAGCCGCGC TTTTTCTTTGCTGTG TERM 781 675823 - 675798 - T 100 -18.3 -3.99353 | opp_overlap 675798 GAGAGAGTAAGCAAA GCGCGACTGCC GACC GGCAGCCGCGC TTTTTCTTTGCTGTG TERM 782 675854 - 675876 + T 95 -14.8 -3.45118 | opp_overlap 675856, overlap 675856 GGCGAGGCAATAAAA AAGCCGCCCC GTT GGGGCGGCTG TTGGTTGTGCCGTCA TERM 783 675856 - 675874 + T 100 -17.4 -3.29593 | opp_overlap 675856, overlap 675854 CGAGGCAATAAAAAA GCCGCCCC GTT GGGGCGGC TGTTGGTTGTGCCGT TERM 784 675874 - 675856 - T 100 -17.4 -5.4833 | opp_overlap 675856 675854 CGAGGCAATAAAAAA GCCGCCCC GTT GGGGCGGC TGTTGGTTGTGCCGT zntA 678399 - 675901 - | zinc/cadmium/mercury/lead-transporting ATPase TERM 785 678122 - 678110 - G 70 -10.5 -3.62046 | opp_overlap 678109 GGAGTGGCGCAACAA CCCCC TCT GGGGG GCTCTTCCCCCTCGG AHA_0630 678536 - 679036 + | thiol peroxidase TERM 786 679082 - 679056 - T 100 -25.2 -3.83568 | opp_overlap 679056 GCAGACTGACAACAA TCCCGCCGGGGC ATG GCCCCGGCGGGA TTTTTTTATGGAACA TERM 787 679056 - 679082 + T 100 -25.2 -5.60993 | opp_overlap 679056 GCAGACTGACAACAA TCCCGCCGGGGC ATG GCCCCGGCGGGA TTTTTTTATGGAACA AHA_0631 679917 - 679099 - | hypothetical protein AHA_0632 680086 - 681306 + | DEAD-box ATP dependent DNA helicase TERM 788 681528 - 681509 - g 73 -12.8 -3.21099 | CGGGGTCAGGATCAA CGGCAGCC TGCT GGCCGCCG GCAAGCAGGCGGATA AHA_0633 681402 - 682895 + | hypothetical protein TERM 789 682913 - 682928 + T 100 -11.8 -5.18726 | opp_overlap 682908 GCGGGAAAATGCGAA GGGCCC TGAC GGGCCC TTTTTCTTGTGGAGA AHA_0634 683757 - 682969 - | hypothetical protein AHA_0635 684869 - 683754 - | endonuclease/exonuclease/phosphatase family protein TERM 790 685246 - 685267 + r 100 -17.3 -3.29511 | CAAACTGGGTGAAGC GGGCGTGCC GGGC GGCACGCCC TTGTAAGGCGGTCAG AHA_0636 686838 - 685279 - | aerotaxis receptor Aer TERM 791 686576 - 686590 + g 78 -7 -4.56597 | ACCCAGTAGAACTTG CCGCTC TTG GCGCGG TTTTTCACCAGCCCC AHA_0637 687910 - 687080 - | CAAX amino protease TERM 792 688049 - 688033 - R 100 -10.1 -5.60993 | opp_overlap 688033 GCGGCCATAAAAAAA CCGGAGC TGG ACTCCGG TTTTGGCAAGGGTGA TERM 793 688033 - 688049 + r 80 -9.4 -4.08216 | opp_overlap 688033 GCGGCCATAAAAAAA CCGGAG CTGGA CTCCGG TTTTGGCAAGGGTGA AHA_0638 688364 - 688074 - | hypothetical protein TERM 794 688294 - 688304 + g 81 -2.4 -5.2166 | overlap 688294 TTGCCTTTCTTCTTG GCAG GGG CGGC TTTTTTCGGTTGTTC AHA_0639 688802 - 688428 - | hypothetical protein TERM 795 689688 - 689678 - g 73 -8.2 -4.08216 | GCACCTGCTGGAAAA CCCG GAG CGGG ACAACCTGGTGGCCA AHA_0640 689124 - 690239 + | carbohydrate diacid regulator AHA_0641 690359 - 691621 + | gluconate:H+ symporter (GntP) family protein TERM 796 691776 - 691808 + G 72 -11.9 -3.38291 | opp_overlap 691773 GCGGCGAAGGGACGG TGCAGTCCCTGGTGG ACG CCACCGGTGGCCGCA TTCTGCCCTTCTACG TERM 797 692269 - 692218 - g 77 -13.6 -3.31144 | overlap 692237 692266 CTGCGACGTGGACAA CCCGCTGTGCGGACCGAAAGGGGC CTCC GCCGTGTTCGGTCCGCAGAAGGGG GCGACCCCCGAGATG AHA_0642 691631 - 692764 + | glycerate kinase 2 TERM 798 692854 - 692871 + F 100 -11.3 -5.33848 | TGCCCGAAACACCTT GCCGATC AGAT GATCGGC TTTTTTCATTATCCT AHA_0643 692975 - 693538 + | hypothetical protein AHA_0644 693601 - 694134 + | glutathione peroxidase AHA_0645 694196 - 695152 + | LysR family transcriptional regulator AHA_0646 695335 - 696531 + | nucleoside permease TERM 799 696563 - 696578 + T 100 -11.8 -5.25803 | CACCTTCCGGTCAGA GCCCGC TTCG GCGGGC TTTTTTGTGGCCGTT TERM 800 696625 - 696609 - T 100 -13.7 -5.75342 | TGCCGGCAAAAAAAA GCGCCTC AGG GAGGCGC GGGGAAAAGACAGAT AHA_0647 697288 - 696794 - | methylated-DNA--protein-cysteine methyltransferase AHA_0648 697738 - 697322 - | peptidyl-tRNA hydrolase domain-containing protein TERM 801 697416 - 697447 + g 76 -8.6 -4.1552 | gap 1 CTGCGGGTCGGCTTG GTGGCGTGGCGGGCC TTG GGGC-GCCAGGCCGC TTTCTTCAGCAGCTC AHA_0649 697940 - 698278 + | nitrogen regulatory protein P-II TERM 802 698332 - 698359 + F 100 -15.6 -4.41348 | opp_overlap 698343 GATTGACTCCATGGT GGGGCCAGATAG GATT CTATCCGGCCCC TTTGTTTGAACAGGG TERM 803 698953 - 698940 - g 77 -2.3 -5.01042 | overlap 698941 AATTCAAAGGAAAAA TCTGC ACCC GCAGC GGCAAGCATGAGTAC AHA_0650 698486 - 699493 + | iron binding protein FbpA TERM 804 699518 - 699498 - f 89 -16.9 -2.53263 | opp_overlap 699494 TCGACTTGTAATTCA GATGGGGCC AAG GGCCCCATC AACCTCTGTGGTCTC TERM 805 699555 - 699586 + G 81 -13.6 -3.59315 | overlap 699556 699578 699582 AATTTTGGATGGATT ACCGGCAGCTGGGC CAGC GCCCTGCTGCTGGC TTTGCCGGTGCTTGC TERM 806 699556 - 699585 + G 84 -17.1 -2.75268 | overlap 699555 699578 699582 ATTTTGGATGGATTA CCGGCAGCTGGGC CAGC GCCCTGCTGCTGG CTTTGCCGGTGCTTG fbpB 699534 - 701159 + | iron(III) ABC transporter, permease protein TERM 807 701517 - 701531 + G 73 -11.4 -3.59979 | opp_overlap 701526 CCCCACCTGACGGTG GCCGAC AAT GTCGGC TTTGGCCTGACCAAG AHA_0652 701229 - 702263 + | iron(III) ABC transporter, ATP-binding protein AHA_0653 702367 - 703272 + | TyrA protein TERM 808 703300 - 703317 + T 100 -12.7 -4.43272 | opp_overlap 703300 TGCAGATAACAAAAA TCCCGGC CTTG GCCGGGA TTTTGCGTTTTGGCT TERM 809 703317 - 703300 - T 100 -12.7 -5.24796 | opp_overlap 703300 TGCAGATAACAAAAA TCCCGGC CTTG GCCGGGA TTTTGCGTTTTGGCT argR 703829 - 703359 - | arginine repressor TERM 810 704081 - 704061 - g 74 -5.3 -4.66163 | overlap 704062 704063 704072 ATCGGTATCGAAAAA TCCTGGCAC AAG GTGCCGGTA CTGCAACAGGTCAGC AHA_0655 704031 - 704771 + | arginine ABC transporter, ATP-binding protein AHA_0656 704797 - 705534 + | arginine ABC transporter, periplasmic arginine-binding protein ArtI AHA_0657 705538 - 706188 + | arginine ABC transporter, permease protein ArtQ artM 706191 - 706853 + | arginine transporter permease subunit ArtM TERM 811 706876 - 706915 + F 100 -10.8 -5.22039 | gap 1, opp_overlap 706876, overlap 706879 706879 706879 AGATCTACCTATTAA TGGTGAGGGGAAGTGCAGG AAA TCTGTGCTTCCCCTC-CAA TTTTTTGCATTTCCC TERM 812 706879 - 706934 + F 86 -6.9 -5.06414 | opp_overlap 706876, overlap 706879 706879 706876 TCTACCTATTAATGG TGAGGGGAAGTGCAGGAAATCTGTG CTTCCC CTCCAATTTTTTGCATTTCCCCCCA TTTTTATTCGCCGCC TERM 813 706879 - 706914 + F 83 -12 -3.72139 | gap 1, opp_overlap 706876, overlap 706879 706876 706879 TCTACCTATTAATGG T-GAGGGGAAGTGCAGG AAA TCTGTGCTTCCCCTCCA ATTTTTTGCATTTCC TERM 814 706879 - 706913 + F 79 -13.6 -2.82199 | opp_overlap 706876, overlap 706876 706879 706879 TCTACCTATTAATGG TGAGGGGAAGTGCAGG AAA TCTGTGCTTCCCCTCC AATTTTTTGCATTTC mdh 707075 - 708010 + | malate dehydrogenase TERM 815 708048 - 708031 - f 83 -12.7 -3.2794 | opp_overlap 708031 CCGGATGGACAGCAA GGGGAGC TTCG GCTCCCC TTTGTCGTTATGGTG TERM 816 708031 - 708048 + F 95 -12.7 -4.11281 | opp_overlap 708031 CCGGATGGACAGCAA GGGGAGC TTCG GCTCCCC TTTGTCGTTATGGTG AHA_0660 708135 - 709046 + | sodium-type flagellar motor component TERM 817 709084 - 709057 - T 100 -12 -5.47821 | overlap 709058 ACTGAGCCAAAAAAA TGACCCACGGAT CTGC ATCCGTGGGCCG GGAGGAGCCGGCCGC TERM 818 709083 - 709058 - T 100 -15.5 -3.87608 | overlap 709057 CTGAGCCAAAAAAAT GACCCACGGAT CTGC ATCCGTGGGCC GGGAGGAGCCGGCCG AHA_0661 710342 - 709149 - | flavohemoprotein TERM 819 710201 - 710172 - G 81 -15.8 -3.06796 | gap 1, overlap 710174 TGCCACCGCATTGAA CAGCGCCAGCGGC TGGCC GCCGCTG-CGCTG GTGCGCCAGGTTGAA TERM 820 710199 - 710174 - G 71 -12.6 -3.09327 | gap 1, overlap 710172 CCACCGCATTGAACA GCGCCAGCGGC TGGCC GCCGCTG-CGC TGGTGCGCCAGGTTG TERM 821 710390 - 710400 + H 73 -5.4 -4.53602 | opp_overlap 710364 TCACTTAATAAGCTG CATC CTA GATG TTTATTTGATCTGAA AHA_0662 710453 - 710920 + | Rrf2 family protein TERM 822 710955 - 710925 - T 100 -17 -3.19091 | opp_overlap 710932, overlap 710932 AGAGCGAGTGAGCAA GCAAAAAGGCTGCC AGT GGCAGCCTTTTTTC AATCTTCAAAGCCAG TERM 823 710932 - 710948 + T 100 -13.7 -5.1615 | opp_overlap 710925 710932 GTGAGCAAGCAAAAA GGCTGCC AGT GGCAGCC TTTTTTCAATCTTCA TERM 824 710948 - 710932 - T 100 -13.7 -4.90266 | opp_overlap 710932, overlap 710925 GTGAGCAAGCAAAAA GGCTGCC AGT GGCAGCC TTTTTTCAATCTTCA AHA_0663 712234 - 710954 - | putative transporter AHA_0664 713066 - 712275 - | putative cytochrome C assembly protein ffh 713341 - 714717 + | signal recognition particle protein TERM 825 714744 - 714764 + F 100 -14.7 -4.25104 | overlap 714757 TCATGCACACGTCAA GGGCTCACC ATG GGTGGGCCC TTTTCATGGGGCCGC TERM 826 714854 - 714873 + F 73 -9.2 -3.83006 | opp_overlap 714853 CTTATTTTAAGCTAG GGTCCGCG TGTT TGCGGGCC TTGTTCATTAGATGT rpsP 714902 - 715150 + | ribosomal protein S16 rimM 715175 - 715696 + | 16S rRNA processing protein RimM TERM 827 715896 - 715866 - g 73 -8.2 -3.97947 | opp_overlap 715873 715874 TTTACCCACGACAAA CACCGTACGGTCGA TGA TCGTCCTTATGGTG GTGGGCCCGGCATGT trmD 715731 - 716480 + | tRNA (guanine-N1)-methyltransferase rplS 716513 - 716860 + | 50S ribosomal protein L19 TERM 828 716915 - 716933 + T 100 -16 -5.37043 | opp_overlap 716915 GACAGGTAGTGAAAA GGCTCGCC AAT GGCGAGCC TTTTTTGTATCCGCT TERM 829 716933 - 716915 - T 100 -16 -4.20531 | opp_overlap 716915 GACAGGTAGTGAAAA GGCTCGCC AAT GGCGAGCC TTTTTTGTATCCGCT AHA_0670 717293 - 716964 - | 1,4-alpha-glucan branching enzyme TERM 830 717323 - 717335 + r 77 -4.1 -5.01546 | opp_overlap 717323 CTGATTGCGAAGAAA TAGCT GCT GGCTA TTTTTATATCACTTT mutH 718050 - 717376 - | DNA mismatch repair protein TERM 831 718085 - 718109 + H 77 -4.9 -4.83615 | opp_overlap 718085 718086, overlap 718087 718088 GGATTATTCTAGCAA CTCTGATCCTC GCT GAGGATCGCTG TTTTTATAACCGATC AHA_0672 718784 - 719311 + | NUDIX family hydrolase ptsI-1 719326 - 721605 + | phosphoenolpyruvate-protein phosphotransferase lgt 721673 - 722497 + | prolipoprotein diacylglyceryl transferase thyA 722497 - 723291 + | thymidylate synthase TERM 832 723299 - 723315 + F 100 -10.8 -5.28176 | opp_overlap 723299 CCATCTGATGTGAAA GGCGCC CATGA GGCGCC TTTTTTATGCATAAA TERM 833 723315 - 723299 - f 77 -11.5 -3.60627 | opp_overlap 723299 CCATCTGATGTGAAA GGCGCCC ATG AGGCGCC TTTTTTATGCATAAA TERM 834 723403 - 723389 - f 73 -6.4 -4.4009 | overlap 723390 CCGTATGGGAGAAAA CCTGCT TAT AGCAGA CATGTTTGATTTTGC nhaA 723518 - 724708 + | Na+/H+ antiporter NhaA TERM 835 725180 - 725152 - g 71 -8.8 -3.82824 | gap 1, opp_overlap 725150 725152 GATGACTCAGAAGAA GGGC-TCCGTCAC GCAA GCGGCGGAAGCCC TCTTCTTGACCCCGC nhaR 725099 - 726031 + | transcriptional activator NhaR AHA_0678 726057 - 726383 + | nodulation protein NolR TERM 836 726410 - 726381 - T 80 -9.4 -4.21607 | opp_overlap 726388 726407, overlap 726388 TGCAGCGAACAGAAA TAAAAAACCGGC ACGAAG GCCGGTTTTTTT AGCTTTGTTCAGCGG TERM 837 726403 - 726388 - T 100 -7.5 -5.7827 | opp_overlap 726388, overlap 726381 AACAGAAATAAAAAA CCGGC ACGAAG GCCGG TTTTTTTAGCTTTGT TERM 838 726388 - 726403 + T 100 -7.5 -5.59564 | opp_overlap 726388 726381 AACAGAAATAAAAAA CCGGC ACGAAG GCCGG TTTTTTTAGCTTTGT rpsT 726697 - 726434 - | ribosomal protein S20 TERM 839 726464 - 726484 + g 71 -5.3 -4.52415 | overlap 726478 GATCTGGGCAGACAG GCGGCTCTT GTG ACGAGCAGC TTTGTTCTTGTGGAT TERM 840 726807 - 726793 - H 75 -7.1 -4.41616 | opp_overlap 726795 ATTTGTGCAAATAAA CACCG CCCCC CGGTG GTGTGTCAGATGGGA mviN 726889 - 728454 + | integral membrane protein MviN TERM 841 728745 - 728719 - g 100 -10 -4.72272 | opp_overlap 728738 CGCCTGCAGGAAAAA GCAGCCCAGCTG GGC CTGCCGGCCTGC GTCATGCTGTTTGAA TERM 842 728939 - 728969 + G 74 -4.6 -4.54727 | overlap 728934 TGCTGGTGGAGAAAC TCGGCGTGCACTAT CTG GTGGTGGGCGACGA TTTTCGTTTCGGCAA ribF 728596 - 729570 + | riboflavin biosynthesis protein RibF ileS 729570 - 732431 + | isoleucyl-tRNA synthetase TERM 843 732547 - 732565 + G 75 -12.4 -3.63991 | GCCATTTGGCTACCC GGGGGTGG AGA TCACCCCC TTCTTCAACCTGGTC lspA 732431 - 732934 + | signal peptidase II fkpB 732931 - 733383 + | FKBP-type peptidyl-prolyl cis-trans isomerase FkpB ispH 733383 - 734318 + | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 844 734358 - 734377 + F 100 -13.6 -4.7254 | GCCATGAGTGCCTGA GCCACCTC CTGT GAGGTGGC TTTTTCATGGGCGAT AHA_0686 734580 - 735083 + | putative type IV pilin pilV 735080 - 735493 + | type IV pilus modification protein PilV AHA_0688 735490 - 736584 + | putative type IV pilin AHA_0689 736595 - 737071 + | hypothetical protein TERM 845 737411 - 737389 - g 78 -7 -4.58786 | overlap 737401 AGCAACAACAACAAA CTCTACTACA ACC CGCAGCAGAG CTATCGGCCCTGGGC TERM 846 737908 - 737925 + G 77 -2.5 -5.0133 | GTAGCGCCTTTTTCC GGCACCG ATCG CAGCGCC TTTTTTAGCGACCTA AHA_0690 737083 - 740436 + | type IV pilus biogenesis protein AHA_0691 740445 - 740846 + | type IV pilin AHA_0692 741237 - 740851 - | type IV pilin AHA_0693 741332 - 741868 + | putative type IV pilin AHA_0694 741859 - 742482 + | putative type IV pilin AHA_0695 742484 - 743581 + | hypothetical protein TERM 847 744261 - 744251 - g 71 -8.2 -3.92075 | ACGGTGACTTATAAA CCCG CAG CGGG TGGCAACACCCAGCA AHA_0696 743594 - 745693 + | putative type IV pilin TERM 848 745700 - 745720 + F 100 -18.3 -5.04733 | ACCCCTTGAGCCTTG GGCGCTGGC ACA GCCAGCGCC TTTTCTTTATCATTC TERM 849 746610 - 746600 - g 72 -2.4 -4.7373 | CTATGTCACCAAAAA CGGG TTC CACG GCGCCGTGCTGGGCC nadE 745767 - 747389 + | NAD synthetase glnB 747399 - 747737 + | nitrogen regulatory protein P-II 1 AHA_0699 747748 - 748392 + | transcriptional regulatory protein luxS 748411 - 748920 + | S-ribosylhomocysteinase TERM 850 748973 - 748936 - T 100 -16.5 -3.66178 | gap 1, opp_overlap 748945, overlap 748945 TCCCGGAATGGCAAA CATG-AAAAAGGCCGGTC AAT GACCGGCCTTTTTGCGTG CTGACGGAATCAGGA TERM 851 748945 - 748963 + T 100 -16 -4.68593 | opp_overlap 748936 748945 GGCAAACATGAAAAA GGCCGGTC AAT GACCGGCC TTTTTGCGTGCTGAC TERM 852 748963 - 748945 - T 100 -16 -4.93696 | opp_overlap 748945, overlap 748936 GGCAAACATGAAAAA GGCCGGTC AAT GACCGGCC TTTTTGCGTGCTGAC AHA_0701 749948 - 748983 - | GGDEF family protein TERM 853 749138 - 749155 + g 83 -4.9 -5.08824 | gap 1 TGCGCCGGCCCGATT TG-CGATC CAG GATCGACA TTTTTTCGATGGCCC TERM 854 752530 - 752510 - g 86 -5.3 -5.1675 | overlap 752498 752529 CGACCGAGCAAAAAA GCTCGCGAC AAG GCCAAGAGC ACTAAATGAGTACTG rnr 750140 - 752539 + | ribonuclease R TERM 855 752761 - 752736 - g 70 -10.4 -3.65046 | GGCGGAGGGTAACAA TCACCAGGGC ATCATG GCCCGGGTGA AAGAGGCGCCCAAGC TERM 856 752978 - 753001 + G 70 -10.2 -3.65046 | opp_overlap 752941 TGCGCAAGGTCGCCT GTGGCGCCGC CGAA GTGGTGCCGC TTATTCAGGTCACCA AHA_0703 752536 - 753285 + | RNA methyltransferase TERM 857 753335 - 753360 + G 78 -9.8 -4.07687 | gap 1, opp_overlap 753334 753337 GATCGGGTCACAGAT GAGCAGGAGGC CGCGC GCCTCCT-CTC TTTTGCCCGGCCGCT AHA_0704 753296 - 753862 + | cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase AHA_0705 753920 - 754369 + | acetyltransferase AHA_0706 754597 - 755448 + | drug/metabolite exporter family protein TERM 858 755499 - 755544 + F 71 -10.5 -3.19602 | gap 3, opp_overlap 755487 755484 755526, overlap 755484 755497 GCAGGCATCTTATGA GGCCGCTCTCTGTCATGGCCGG GCAAA CCGGCTATG-CTG-G-GCGGCC TGTTGCTATCGGAAC AHA_0707 755566 - 756402 + | drug/metabolite exporter (DME) family protein AHA_0708 757284 - 756436 - | hypothetical protein TERM 859 756883 - 756854 - G 70 -12.1 -3.14132 | TCTTTGCGCCAGTAA GGCATCAGCGCTC GGTT GAGCGCCAGTGCC GCCAGATGGCAGCCG TERM 860 757378 - 757335 - R 100 -16.8 -3.64599 | opp_overlap 757319, overlap 757314 757316 757317 757336 CCAGCATACGCCAAA GCGCAGGCCGGCTCATTAAC CTCG GTTAACAAGCCGGCCTGAGG AGGGGATGGCGGGCT TERM 861 757377 - 757336 - R 100 -20.3 -2.78438 | opp_overlap 757319, overlap 757314 757316 757317 757335 CAGCATACGCCAAAG CGCAGGCCGGCTCATTAAC CTCG GTTAACAAGCCGGCCTGAG GAGGGGATGGCGGGC mntH 758630 - 757392 - | manganese transport protein MntH rpsF 758853 - 759239 + | ribosomal protein S6 rpsR 759270 - 759500 + | ribosomal protein S18 rplI 759553 - 759999 + | ribosomal protein L9 TERM 862 760042 - 760025 - f 100 -14.1 -5.24129 | opp_overlap 760025 CTTTTGCAGAAAAAA CCCGCGC ACTT GCGCGGG TTTTTTATTTTCAGG TERM 863 760025 - 760042 + F 100 -14.1 -5.79595 | opp_overlap 760025 CTTTTGCAGAAAAAA CCCGCGC ACTT GCGCGGG TTTTTTATTTTCAGG TERM 864 760574 - 760591 + G 79 -8.3 -4.26188 | overlap 760585 TATCGTGGGGTTTGC CGCCCGC CACG GCGAGCG TTTTCGCTATGTGCC AHA_0713 760101 - 760841 + | ferredoxin--NADP reductase TERM 865 760875 - 760847 - T 100 -14 -4.04206 | gap 1, opp_overlap 760855, overlap 760848 760851 CTACTGGTAGAGAAA TGGACACAGGGGC CTCG GCCCCTGTGT-CA GGGTAACGGGGATGA TERM 866 760875 - 760848 - T 93 -15.6 -3.02202 | opp_overlap 760855, overlap 760847 760851 TACTGGTAGAGAAAT GGACACAGGGGC CTCG GCCCCTGTGTCA GGGTAACGGGGATGA TERM 867 760872 - 760851 - T 86 -15.9 -2.73529 | opp_overlap 760855, overlap 760847 760848 TGGTAGAGAAATGGA CACAGGGGC CTCG GCCCCTGTG TCAGGGTAACGGGGA AHA_0714 761211 - 760894 - | hypothetical protein AHA_0715 761574 - 762512 + | hypothetical protein TERM 868 762519 - 762536 + T 100 -12.7 -5.06816 | GGGAGTTGATCATCA GGCCACC GCAG GGTGGCC TTTTTATTGCCGCGT AHA_0716 762765 - 762562 - | hypothetical protein AHA_0717 762774 - 763751 + | quinone oxidoreductase AHA_0718 763748 - 764185 + | hypothetical protein AHA_0719 764205 - 767018 + | M16B family peptidase TERM 869 767065 - 767036 - f 93 -11.4 -4.38927 | gap 1, overlap 767038 GCGCTACATAATAAA GAGT-GCCGCCCC CCTGT GGGGCGGCCACAC ATGAGCCGTGAATAT TERM 870 767063 - 767038 - f 90 -12.6 -3.79864 | gap 1, overlap 767036 GCTACATAATAAAGA GT-GCCGCCCC CCTGT GGGGCGGCCAC ACATGAGCCGTGAAT gshA 767079 - 768668 + | glutamate--cysteine ligase TERM 871 768690 - 768707 + F 100 -12.7 -5.24531 | CCATTTCTGCTGCAA GCCGCTC TTCG GAGCGGC TTTTTTATGGGCGGT TERM 872 769193 - 769161 - g 71 -9.1 -3.71284 | overlap 769144 GGGTGATGAAGATAA CCCTGATCCCGACCC GCG GCATGGGGATCAAGG AGGTCAGAGCCGCCG AHA_0721 768923 - 770137 + | hypothetical protein TERM 873 770175 - 770159 - T 100 -10.1 -4.96106 | opp_overlap 770159, overlap 770153 GACAAACAGCAAAAA GCCGCTC TTG AAGCGGC TTTTTTATTTCCCTG TERM 874 770159 - 770175 + T 100 -9.4 -5.65927 | opp_overlap 770159 770153 GACAAACAGCAAAAA GCCGCT CTTGA AGCGGC TTTTTTATTTCCCTG AHA_0722 772010 - 770220 - | long-chain-fatty-acid--CoA ligase-like protein AHA_0723 772197 - 772742 + | hypothetical protein rimI 773217 - 772768 - | ribosomal-protein-alanine acetyltransferase TERM 875 773089 - 773060 - G 71 -8.5 -3.95073 | gap 1, overlap 773061 TCCGAGATGTAGAAA CCGGCCGGCTGGCC GTC GACCAGC-AGCAGG CCGTTGAGGTAGCGC AHA_0725 773947 - 775593 + | ATPase TERM 876 776553 - 776531 - g 70 -12 -3.18264 | CTGCTCAGCTACCAA TCGCGTGGCA CCC TGCCACGCCA GCGCATCATGCTGCG yieM 775781 - 777100 + | hypothetical protein AHA_0727 778114 - 777110 - | diguanylate cyclase/phosphodiesterase AHA_0728 778338 - 779258 + | TPR repeat-containing protein AHA_0729 779375 - 780184 + | GGDEF/response regulator receiver domain-containing protein TERM 877 780196 - 780227 + F 75 -6.4 -4.65895 | opp_overlap 780166, overlap 780198 GTAGGGGGCGCAGGC TCCCCTGCTCGCCT GCAA AGCCGGGCTGGGTA TTTTTCACTCGCGCG TERM 878 780198 - 780225 + F 76 -9 -3.94812 | opp_overlap 780166, overlap 780196 AGGGGGCGCAGGCTC CCCTGCTCGCCT GCAA AGCCGGGCTGGG TATTTTTCACTCGCG prfC 780442 - 782028 + | peptide chain release factor 3 TERM 879 782065 - 782084 + F 100 -15 -5.47218 | opp_overlap 782065 GACAAGATAAAAAAA GACCCCGC CCAG GCGGGGTC TTTTTTTGCATGGCG TERM 880 782084 - 782065 - f 100 -15 -5.84432 | opp_overlap 782065 GACAAGATAAAAAAA GACCCCGC CCAG GCGGGGTC TTTTTTTGCATGGCG AHA_0731 782197 - 782535 + | steroid delta-isomerase domain-containing protein AHA_0732 783096 - 782602 - | transcriptional regulatory protein AHA_0733 783159 - 783617 + | alkylhydroperoxidase AhpD core TERM 881 783659 - 783630 - T 89 -13.7 -3.65351 | opp_overlap 783635, overlap 783635 TGAGCGGCAGGCAAA CAAAAGGACGGCA TCGC TGCCGCCCTTTTA TCCTGAGCTGATCAC TERM 882 783654 - 783635 - T 100 -11.4 -4.90778 | opp_overlap 783635, overlap 783630 GGCAGGCAAACAAAA GGACGGCA TCGC TGCCGCCC TTTTATCCTGAGCTG TERM 883 783635 - 783654 + T 85 -9.2 -4.46926 | opp_overlap 783635 783630 GGCAGGCAAACAAAA GGACGGCA TCGC TGCCGCCC TTTTATCCTGAGCTG AHA_0734 784613 - 783675 - | MarR family transcriptional regulator TERM 884 784661 - 784675 + r 100 -5 -5.4833 | opp_overlap 784658 784661 CAATATAGCCAACTA GTTGTT ACT AGCAAC TTTTTTATTGGGTCA TERM 885 784754 - 784737 - R 100 -9.8 -5.28778 | overlap 784724 AGCAGGCACAAAAAA GGGCCC GGGAGG GGGCCC AAACATTGGAAACCC TERM 886 784784 - 784767 - R 76 -10.5 -3.695 | opp_overlap 784761 784782, overlap 784768 CCCAAACATTGGAAA CCCGCGC GAGG GCGCGGA TCCCATCCTTGGTCA TERM 887 784783 - 784768 - R 72 -11.8 -2.81218 | opp_overlap 784761 784782, overlap 784767 CCAAACATTGGAAAC CCGCGC GAGG GCGCGG ATCCCATCCTTGGTC xenB 785940 - 784819 - | xenobiotic reductase B TERM 888 786215 - 786195 - g 76 -8.1 -4.15044 | GCGTTTGGCAACAAA CGCGGCCTG CTG CTGGCGGCG GTCGATCACTATGTG AHA_0736 786045 - 786611 + | TetR family transcriptional regulator TERM 889 786617 - 786666 + T 100 -25.3 -2.78384 | opp_overlap 786627 786630, overlap 786627 786630 GCGGGCGTAATGCGC CGCCCATAAACAACCATGGCTCC CGCG GGAGCCATGGTTGTTTATGGGGA TGTCATACACCGCCG TERM 890 786627 - 786656 + T 100 -20.9 -3.88787 | opp_overlap 786627 786630, overlap 786617 786630 TGCGCCGCCCATAAA CAACCATGGCTCC CGCG GGAGCCATGGTTG TTTATGGGGATGTCA TERM 891 786656 - 786627 - T 100 -20.9 -3.85698 | opp_overlap 786627 786617 786630, overlap 786630 TGCGCCGCCCATAAA CAACCATGGCTCC CGCG GGAGCCATGGTTG TTTATGGGGATGTCA TERM 892 786653 - 786630 - T 100 -16.8 -4.06419 | opp_overlap 786627 786617 786630, overlap 786627 GCCGCCCATAAACAA CCATGGCTCC CGCG GGAGCCATGG TTGTTTATGGGGATG TERM 893 786630 - 786653 + T 100 -16.8 -4.07133 | opp_overlap 786630 786627, overlap 786627 786617 GCCGCCCATAAACAA CCATGGCTCC CGCG GGAGCCATGG TTGTTTATGGGGATG AHA_0737 787707 - 786751 - | LysR family transcriptional regulator AHA_0738 787858 - 788955 + | agmatine deiminase TERM 894 788979 - 789003 + F 72 -11.5 -3.13371 | opp_overlap 788984, overlap 788984 AAGAGTGTAGACATT CAAAACCCCAC GCC GTGGGGTTTTA TCTCTTGATGACGTG TERM 895 788984 - 788998 + F 100 -11.4 -4.6955 | opp_overlap 788984, overlap 788979 TGTAGACATTCAAAA CCCCAC GCC GTGGGG TTTTATCTCTTGATG TERM 896 788998 - 788984 - f 91 -11.4 -4.26188 | opp_overlap 788984 788979 TGTAGACATTCAAAA CCCCAC GCC GTGGGG TTTTATCTCTTGATG AHA_0739 789082 - 790785 + | amidase TERM 897 790862 - 790834 - f 79 -7.5 -4.48987 | opp_overlap 790839, overlap 790839 CGGTGATAACGAAAA CAAAACCACCC GCCATTT GGGTGGTTTTT TTATTTTCAGTGTAG TERM 898 790857 - 790839 - f 100 -7.4 -5.19998 | opp_overlap 790839, overlap 790834 ATAACGAAAACAAAA CCACCC GCCATTT GGGTGG TTTTTTTATTTTCAG TERM 899 790839 - 790857 + F 100 -8.1 -6.09196 | opp_overlap 790839 790834 ATAACGAAAACAAAA CCACCCG CCATT TGGGTGG TTTTTTTATTTTCAG AHA_0740 792493 - 793254 + | beta-lactamase TERM 900 793325 - 793371 + F 70 -9.3 -3.74693 | gap 2, opp_overlap 793304, overlap 793311 793365 CGGGCGTTTCTGGCA GGGGGACGCCCTTG--CCTCCAG TTT CGGGCTGTTCAAGGGCGGCCCCC TTTCATAAGATGGGC AHA_0741 793418 - 794710 + | hypothetical protein TERM 901 794754 - 794741 - T 100 -9.5 -6.20267 | opp_overlap 794741 CGAAAAACAAAAAAA CGCCC GACT GGGCG TTTTTTATTGGCGGT TERM 902 794741 - 794754 + T 100 -9.5 -5.45652 | opp_overlap 794741 CGAAAAACAAAAAAA CGCCC GACT GGGCG TTTTTTATTGGCGGT AHA_0742 796031 - 794781 - | putative ATP-dependent RNA helicase RhlE AHA_0743 797003 - 796134 - | regulatory protein, LysR:LysR, substrate-binding TERM 903 797686 - 797706 + G 71 -12.5 -3.03159 | CCCTCTCCTTCACCG CCGGGCTGG CGC TCGGCCCGG TGTTCAGCGGGTTGG TERM 904 797886 - 797899 + G 77 -3.7 -4.83246 | GGGGAGGGGCTCAAG GCCAC CGGG GCGGC TTTCTTTATTTGTGC AHA_0744 797223 - 798455 + | valanimycin resistance, putative AHA_0745 798917 - 798462 - | hypothetical protein AHA_0746 799088 - 799996 + | hypothetical protein TERM 905 800041 - 800014 - T 76 -12 -3.14211 | opp_overlap 800020, overlap 800020 AGGGGCTTTCATCAA CGACAAGGGCGC TGCG GCGCCCTTTTCA TTGCCGGTCCAGCTG TERM 906 800035 - 800020 - T 81 -11.8 -3.54029 | opp_overlap 800020, overlap 800014 TTTCATCAACGACAA GGGCGC TGCG GCGCCC TTTTCATTGCCGGTC TERM 907 800020 - 800035 + T 95 -11.8 -4.41494 | opp_overlap 800020 800014 TTTCATCAACGACAA GGGCGC TGCG GCGCCC TTTTCATTGCCGGTC AHA_0747 800356 - 800063 - | hypothetical protein TERM 908 800476 - 800459 - R 95 -14.1 -3.30771 | opp_overlap 800459 TTACAGTCGTGACAA CGGGCGC CTGG GCGCCCG TTGTGGATCCTGGCA TERM 909 800459 - 800476 + r 95 -14.1 -3.37796 | opp_overlap 800459 TTACAGTCGTGACAA CGGGCGC CTGG GCGCCCG TTGTGGATCCTGGCA AHA_0748 801062 - 800502 - | carbonic anhydrase TERM 910 801898 - 801886 - g 71 -6.2 -4.24948 | overlap 801879 CGACGAGATGCAAAA GCGC GAGTT GCGC TCCTGCGGTCAGCCG AHA_0749 801320 - 801940 + | ribonuclease T2 family protein AHA_0750 802009 - 802293 + | hypothetical protein AHA_0751 802290 - 803348 + | 2-nitropropane dioxygenase family oxidoreductase TERM 911 805722 - 805685 - f 77 -11.5 -3.61398 | opp_overlap 805690, overlap 805688 TCTTCTTGCTAACAA GAATGCAGAGTTAAGAA CTGA TTCTTAACTCTGTTTTC TTCAGCCTTGTGCTG TERM 912 805719 - 805688 - f 71 -7.4 -3.9461 | opp_overlap 805690, overlap 805685 TCTTGCTAACAAGAA TGCAGAGTTAAGAA CTGA TTCTTAACTCTGTT TTCTTCAGCCTTGTG TERM 913 805690 - 805717 + F 100 -14.4 -4.65747 | opp_overlap 805688 805685 TTGCTAACAAGAATG CAGAGTTAAGAA CTGA TTCTTAACTCTG TTTTCTTCAGCCTTG TERM 914 805845 - 805831 - f 74 -7.2 -4.07687 | opp_overlap 805821 805825 805831 ACTTCTTGGCGAAAA CCAAAT TTT ATTTGG TCCTTGTTGTACAGC TERM 915 805893 - 805863 - f 71 -10.4 -3.25823 | opp_overlap 805869, overlap 805866 CTTGTTGTACAGCAA CAAGCTGCGTCGGT TTC ACCGACACTTCTTG GGGTTGTATGGTTAA TERM 916 805869 - 805887 + F 70 -8.8 -3.70081 | opp_overlap 805866 805863 GTACAGCAACAAGCT GCGTCGGT TTC ACCGACAC TTCTTGGGGTTGTAT TERM 917 806391 - 806379 - f 84 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 918 809210 - 809231 + F 100 -15.9 -4.85129 | opp_overlap 809210, overlap 809217 GCCACTAATTTGAAA GGCCTTCCC AGAT GGGAAGGCC TTTTTGCTATCTGGT TERM 919 809231 - 809210 - f 100 -15.9 -3.67976 | opp_overlap 809210 809217 GCCACTAATTTGAAA GGCCTTCCC AGAT GGGAAGGCC TTTTTGCTATCTGGT TERM 920 809272 - 809329 + G 71 -11.3 -3.50853 | gap 1, opp_overlap 809273, overlap 809273 GAAATAAGGAAACAA AGGACAACAGACAGGGCTGCGACTTGCC ACT GGCAACT-GAGTCCCTGTCAGTTGTCCC TTGTGCTTGAGCCGG TERM 921 809273 - 809328 + G 75 -14.8 -2.70298 | gap 1, opp_overlap 809273, overlap 809272 AAATAAGGAAACAAA GGACAACAGACAGGGCTGCGACTTGCC ACT GGCAACT-GAGTCCCTGTCAGTTGTCC CTTGTGCTTGAGCCG TERM 922 809328 - 809273 - g 100 -14.3 -4.63748 | gap 3, opp_overlap 809272 809273 AAATAAGGAAACAAA GGACAACAGACAGGG-CTGCGACTTGCC ACT GGCAACT-G-AGTCCCTGTCAGTTGTCC CTTGTGCTTGAGCCG TERM 923 809386 - 809405 + G 100 -13.6 -5.72207 | opp_overlap 809386 GCCACTACTCAAGAA GCCCAGTC TAGC GACTGGGC TTTTTTTCGTTTCAC TERM 924 809405 - 809386 - g 84 -13.6 -3.69395 | opp_overlap 809386 GCCACTACTCAAGAA GCCCAGTC TAGC GACTGGGC TTTTTTTCGTTTCAC AHA_0757 809221 - 810054 + | MutT/nudix family protein AHA_0758 811306 - 810083 - | two-component system sensor kinase AHA_0759 812043 - 811363 - | transcriptional regulatory protein CpxR TERM 925 812505 - 812459 - g 100 -26 -2.74012 | overlap 812501 GGACGAGGTGAAGCA GGGCGATCTGCTGGTCGAGATC GAC GATCTCACCCAGCAGAACGCCC TCAAGGATGCCGAGG AHA_0760 812205 - 813365 + | macrolide-specific efflux protein MacA AHA_0761 813368 - 815314 + | macrolide-specific ABC-type efflux carrier TERM 926 815474 - 815496 + T 100 -13.4 -4.91109 | overlap 815477 CTCTGCGCGGGTTTT CAACCGGGCC CCT GGCCCGGTTC TTTTTCTCATGCGAA TERM 927 815477 - 815493 + T 100 -15.1 -4.56153 | overlap 815474 TGCGCGGGTTTTCAA CCGGGCC CCT GGCCCGG TTCTTTTTCTCATGC TERM 928 815538 - 815517 - T 100 -6.5 -5.44119 | gap 1 CTCATGCGAAAAAAA GGCGCCACCC GAG GGG-AACGCC TGAAAGGTCAAACCT AHA_0762 816455 - 815619 - | glutamine/glutamate ABC transporter, periplasmic glutamine/glutamate-binding protein AHA_0763 817213 - 816452 - | ABC transporter AHA_0764 817872 - 817210 - | glutamine transport system permease protein GlnP AHA_0765 818612 - 817947 - | glutamine/glutamate ABC transporter, permease protein AHA_0766 819820 - 818609 - | threonine synthase TERM 929 821362 - 821335 - g 74 -4.8 -4.65895 | gap 1, overlap 821336 821337 GGTTCGAGCCAAAAA GCGGCGCCATCAG CCT CT-ATCGCGCCTC AGCGGCGCCGTTCAA AHA_0767 820056 - 822203 + | prolyl endopeptidase TERM 930 822241 - 822256 + F 95 -11.8 -4.4078 | CATCCACTATCATCA GGGCCC TGCG GGGCCC TTTTCATTGCCGCGC TERM 931 823644 - 823627 - g 89 -12.7 -4.15044 | GCCGGCCGGAACAAA GGCGCAG ACCG CTGCGCC CGCCGCCAAGGCGCT AHA_0768 822407 - 824566 + | AsmA protein TERM 932 824593 - 824617 + F 90 -17.2 -2.6063 | overlap 824590 824591 824597 CGCGTTATCGCCATG CAGAGCCCGC CCCGT GCGGGCTCTG TGCATTGTGGGTCGC TERM 933 824901 - 824918 + G 73 -6.9 -4.29304 | CAGCTCTTTTATCAG GGCGAGC AGCT GCTCGGC TTTATCTTCTGGTGG AHA_0769 824742 - 825278 + | acetyltransferase AHA_0770 825334 - 826068 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 934 826091 - 826117 + T 80 -8.7 -4.15044 | gap 1, opp_overlap 826095, overlap 826095 CCGAGAGTGAATACA AC-AAGGGGCGC CTCG GCGCCCCTTCGG TTTATTCCCCCAGCA TERM 935 826095 - 826112 + T 95 -14.1 -3.37761 | opp_overlap 826095, overlap 826091 GAGTGAATACAACAA GGGGCGC CTCG GCGCCCC TTCGGTTTATTCCCC TERM 936 826112 - 826095 - T 100 -14.1 -3.97511 | opp_overlap 826095 826091 GAGTGAATACAACAA GGGGCGC CTCG GCGCCCC TTCGGTTTATTCCCC AHA_0771 829052 - 826119 - | glutamate-ammonia ligase adenylyltransferase AHA_0772 829564 - 829124 - | acetyltransferase TERM 937 829615 - 829591 - R 100 -13.6 -5.14563 | GCCGCGATGAAAAAA GAAAGGCCCC TCGTG GGGGCCTTCC AGTCTAACCAGATTG AHA_0773 830995 - 829745 - | methyl-accepting chemotaxis protein TERM 938 830183 - 830160 - G 75 -12.4 -3.58343 | gap 1, opp_overlap 830165 830166 830170 GCGACCACCGCGAAA CCACGGCCGGC CTC GCCGGC-GCGG GCGGCTTCGATGGCG TERM 939 831299 - 831326 + G 75 -12 -3.58726 | overlap 831291 GGCCCGAGCCTCCGA CCGGATGGCCTT CTTC AAGGCCAACTGG TTCTATCTGCCGGGC AHA_0774 831027 - 831848 + | ion transporter, putative TERM 940 831911 - 831921 + F 74 -2.4 -5.02357 | CCAGCTCTCAGCTCG GGGG GCG CCAC TTTTCTTTGCTTGTC AHA_0775 832001 - 832606 + | arylsulfatase TERM 941 832629 - 832652 + F 100 -16.8 -5.36441 | opp_overlap 832632 TGTCGGAAGCAGAGT GAAGGGTCGC CATG GCGACCCTTC TTTTTTGTCTGGAGA TERM 942 832649 - 832632 - f 83 -12.7 -3.16267 | opp_overlap 832629 CGGAAGCAGAGTGAA GGGTCGC CATG GCGACCC TTCTTTTTTGTCTGG TERM 943 832821 - 832835 + F 83 -12.8 -3.20382 | CATTATCGGCGTTTC GGCGGC ACG GCCGCC TTCGTCGATATCAGC AHA_0776 832876 - 836040 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 944 836060 - 836077 + F 100 -14.1 -4.73388 | opp_overlap 836057 836055 836060 CCGTGACCAACATCA GGCCGCC TGCG GGCGGCC TTTTTCATGGGCGTT TERM 945 836077 - 836060 - f 83 -14.1 -2.77523 | opp_overlap 836060, overlap 836057 836055 CCGTGACCAACATCA GGCCGCC TGCG GGCGGCC TTTTTCATGGGCGTT AHA_0777 836241 - 837020 + | NUDIX family hydrolase TERM 946 837054 - 837031 - f 74 -9.5 -3.6682 | opp_overlap 837029, overlap 837033 CCTGAGGGATGCAAA GAGGGGCGC TTGTTT GCGCCCCTT CACATCTTTGCACTC TERM 947 837052 - 837033 - f 80 -12.1 -3.41569 | opp_overlap 837029, overlap 837031 TGAGGGATGCAAAGA GGGGCGC TTGTTT GCGCCCC TTCACATCTTTGCAC hemE 837040 - 838230 + | uroporphyrinogen decarboxylase TERM 948 838256 - 838273 + F 100 -14.1 -4.39166 | opp_overlap 838256 CAGCACAGTGAACAA CGGGGCC TGGG GGCCCCG TTTTGCTGTCTGCGG TERM 949 838273 - 838256 - f 95 -14.1 -3.71487 | opp_overlap 838256 CAGCACAGTGAACAA CGGGGCC TGGG GGCCCCG TTTTGCTGTCTGCGG AHA_0779 838411 - 839340 + | ROK family protein epd 839390 - 840400 + | erythrose 4-phosphate dehydrogenase pgk 840463 - 841626 + | phosphoglycerate kinase TERM 950 841633 - 841662 + F 100 -17.9 -4.0162 | opp_overlap 841631, overlap 841638 AAAGCCTAATTGACC CGAGACGGGGGGC AAAA GCCTCCCGTTTCG TTTATCATGTGCCCG TERM 951 841638 - 841657 + F 95 -12.8 -4.16785 | opp_overlap 841631, overlap 841633 CTAATTGACCCGAGA CGGGGGGC AAAA GCCTCCCG TTTCGTTTATCATGT fbaA 841743 - 842822 + | fructose-bisphosphate aldolase TERM 952 842852 - 842869 + F 100 -14.1 -4.8622 | opp_overlap 842852, overlap 842864 TTGATTGCATGAAAA GGCGCCC TGCG GGGCGCC TTTTTCATTGCAGCA TERM 953 842869 - 842852 - f 100 -14.1 -4.26903 | opp_overlap 842852 842864 TTGATTGCATGAAAA GGCGCCC TGCG GGGCGCC TTTTTCATTGCAGCA TERM 954 842913 - 842930 + F 79 -7.7 -4.41177 | opp_overlap 842913, overlap 842864 AGCGGACGTGAGCAA GGTGTCT TTCG AGGCACC TTTTGCATTTCTGTG AHA_0783 843043 - 844347 + | oxidoreductase TERM 955 844489 - 844514 + T 84 -12.7 -3.31322 | gap 1 GGGGGATAGGGTGGA TACCCAGGCCTG AGT CAG-CCTGGGTA TTCTGGCCGGTTGCG AHA_0784 844945 - 844532 - | hypothetical protein TERM 956 845077 - 845024 - R 95 -11 -4.57569 | opp_overlap 845024 845050, overlap 845035 GGATTGCCGGAAAAA TGGCGGTCAAACCGGG-GGCCCGCAC GGTT GCACGGGCCACCCGGCCTCAGCG-CA GCTTCTCCAGCTGGC TERM 957 845067 - 845035 - R 100 -17 -3.55203 | gap 1, opp_overlap 845024 845050, overlap 845024 AAAATGGCGGTCAAA CCGGG-GGCCCGCAC GGTT GCACGGGCCACCCGG CCTCAGCGCAGCTTC dsbD 846842 - 845070 - | thiol:disulfide interchange protein DsbD TERM 958 845924 - 845901 - G 71 -13.8 -2.58861 | opp_overlap 845920, overlap 845900 GATCATCCCCATAAT GGCGACCCCG AGCA CGGAGCCGCC CTGCTGGCGGTTGGA TERM 959 846569 - 846582 + g 76 -8.1 -4.14392 | CGGGCAGCACCGGCT CCTCG AAGG CGAGG TTTTCCCCCTTGAAG cutA 847246 - 846839 - | divalent-cation tolerance protein CutA AHA_0787 847323 - 847691 + | hypothetical protein TERM 960 847725 - 847760 + T 100 -11.3 -4.75404 | gap 1, overlap 847727 847728 CGGGCTTGTCCTCCC CCA-GCACCATCATGC CCCTT GCATGATGGTGCCTCG TTTTTCCTGCCGTTT TERM 961 847727 - 847757 + T 95 -14.1 -3.28472 | overlap 847725 847728 GGCTTGTCCTCCCCC AGCACCATCATGC CCCTT GCATGATGGTGCC TCGTTTTTCCTGCCG TERM 962 847728 - 847756 + T 90 -17.6 -2.56601 | overlap 847727 847725 GCTTGTCCTCCCCCA GCACCATCATGC CCCTT GCATGATGGTGC CTCGTTTTTCCTGCC AHA_0788 848224 - 847787 - | transmembrane pair TERM 963 849201 - 849235 + G 93 -18.7 -3.21199 | gap 1, opp_overlap 849203, overlap 849204 GGGCGCTGGCTGAAG GAGGCCCTGCTGGCGC GGGC GCGCTAGCAGGG-CTC TTCGCTTACTCGGTC AHA_0789 848349 - 849227 + | regulatory protein, LysR:LysR, substrate-binding TERM 964 849234 - 849203 - T 86 -15.8 -2.70932 | opp_overlap 849201 849204 GCGCTGGCTGAAGGA GGCCCTGCTGGCGC GGGC GCGCTAGCAGGGCT CTTCGCTTACTCGGT TERM 965 849204 - 849233 + T 100 -21.5 -3.16676 | opp_overlap 849203, overlap 849201 CGCTGGCTGAAGGAG GCCCTGCTGGCGC GGGC GCGCTAGCAGGGC TCTTCGCTTACTCGG AHA_0790 850146 - 849241 - | chain A, Ygfz protein AHA_0791 850260 - 850529 + | TPR repeat-containing protein TERM 966 850570 - 850587 + G 71 -11.3 -3.46271 | opp_overlap 850572, overlap 850557 ATCACCGCCTCCAGA CAGCAGC GCCT GCTGCTG TTGTCGCTGTTTCTG AHA_0792 850549 - 850926 + | hypothetical protein TERM 967 850974 - 850945 - T 100 -18.7 -4.36914 | opp_overlap 850934 850931 850952 CTCTTCCCCATAAAA CAGATGACCCCGC CGGA GCGAGGTCATCTG GGGGATGCGGATCGA nadB 852758 - 851151 - | L-aspartate oxidase TERM 968 851368 - 851387 + g 84 -11.4 -4.24342 | AGCAGGTCGATGCGG CGCTTGGC CCGG GCCAGGCG TTTGTTGGTACGCAC TERM 969 852812 - 852832 + H 100 -6.1 -5.47218 | overlap 852813 AGCCCAAGCGAGGGT GGTGATGCA GCC TGCGTCACA TTTTTTTCAATGCAA TERM 970 852813 - 852831 + H 76 -9.6 -3.87608 | overlap 852812 GCCCAAGCGAGGGTG GTGATGCA GCC TGCGTCAC ATTTTTTTCAATGCA AHA_0794 852941 - 853522 + | RNA polymerase sigma factor RpoE TERM 971 853774 - 853746 - gf 70 -9.5 -3.36273 | overlap 853747 GCGCTGGAAGATGAA CCCACCATCCTGG CGC CCAAGCCGGTGGA GAGCAAACCTGCCGC TERM 972 853800 - 853782 - gf 71 -8 -3.83026 | CCGGTGGAGAGCAAA CCTGCCGC ACC GCAGCCGG GTACCGCCAAGGTCG rseA 853545 - 854135 + | sigma-E factor negative regulatory protein TERM 973 854208 - 854238 + GF 100 -24.1 -3.61715 | GCTGATCAGTGCCAA GGCCTCGGCCGAC GACAA GTCGGCCGAGGCC TTGTTGCAGCAGATG TERM 974 854377 - 854397 + GF 71 -11.2 -2.87132 | GCTCACCTCAGCTAT CTCGATGG CAAGA CCATCGAG TATCTGCAGCGCCAG TERM 975 854533 - 854565 + GF 95 -14.8 -3.18582 | gap 1 CTGGAGAGCTATGAC CCCGTGCTGGCCGGC CGCA GCCGGGCGGC-CGGG TTGGTGGCTCAGGTC rseB 854071 - 855135 + | sigma-E factor regulatory protein RseB rseC 855229 - 855690 + | sigma-E factor regulatory protein RseC lepA 855811 - 857604 + | GTP-binding protein LepA lepB 857608 - 858531 + | signal peptidase I rnc 858532 - 859203 + | ribonuclease III TERM 976 859206 - 859195 - f 71 -4.4 -4.64598 | CAAGCATTGGAAAAA CTGT CATG ACAG ATACCACTTATTGCG era 859200 - 860099 + | GTP-binding protein Era recO 860100 - 860807 + | DNA repair protein RecO pdxJ 860970 - 861707 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 977 861770 - 861743 - T 81 -12.8 -3.13403 | opp_overlap 861748, overlap 861748 CCCGCGGTACGAAGA GAAAAGGGACGC CACG GCGTCCCTTTTT GTCAGCTCAAACTTG TERM 978 861765 - 861748 - T 100 -12.7 -4.70583 | opp_overlap 861748, overlap 861743 GGTACGAAGAGAAAA GGGACGC CACG GCGTCCC TTTTTGTCAGCTCAA TERM 979 861748 - 861765 + T 100 -12.7 -4.85599 | opp_overlap 861748 861743 GGTACGAAGAGAAAA GGGACGC CACG GCGTCCC TTTTTGTCAGCTCAA AHA_0804 863703 - 861793 - | enterotoxin AHA_0805 864660 - 863806 - | tagatose bisphosphate family class II aldolase nagA-1 865850 - 864651 - | N-acetylglucosamine-6-phosphate deacetylase TERM 980 864708 - 864747 + g 74 -14.2 -2.58074 | gap 1, opp_overlap 864707 864705 864703 864708, overlap 864707 864705 864703 TTCAGGGAAAGAGAG CGGGGTTG-GGGCGGGGAG GAT CTCCCGGCCCGCTACCCAG ATATGTTGTTGATTG TERM 981 864747 - 864708 - G 74 -14.2 -2.56124 | gap 1, opp_overlap 864708 864707 864705 864703, overlap 864707 864705 864703 TTCAGGGAAAGAGAG CGGGGTTG-GGGCGGGGAG GAT CTCCCGGCCCGCTACCCAG ATATGTTGTTGATTG AHA_0807 866348 - 865851 - | N-acetyl-galactosamine TERM 982 866327 - 866307 - G 74 -9.6 -3.83026 | TTCCTTTACAGCAAA GGGCCGGC CTGGT GCCGGCAC CGGATTAGAGGAAGC AHA_0808 867210 - 866332 - | N-acetylgalactosamine permease IID component AHA_0809 867976 - 867200 - | N-acetylgalactosamine permease IIC component 1 AHA_0810 868465 - 867992 - | N-acetylgalactosamine-specific PTS system transporter subunit IIB AHA_0811 869634 - 868465 - | putative tagatose-6-phosphate ketose/aldose isomerase TERM 983 869544 - 869559 + g 70 -11.8 -3.16055 | CCATGGTGAGGGTCT CCCGCC AGGT GGCGGG TTGCTGGCGAATTTC AHA_0812 870960 - 869647 - | D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit AHA_0813 871233 - 872030 + | DNA-binding transcriptional regulator AgaR TERM 984 872085 - 872050 - T 100 -16.2 -3.36327 | opp_overlap 872052 872057, overlap 872051 872057 GCACTCGATGGAGAA TGCGAAAGAGGGACGC CGCG GCGTCCCTCTTTCGTG GTTGGGGGCAAAGCT TERM 985 872084 - 872051 - T 100 -19.7 -2.61582 | opp_overlap 872052 872057, overlap 872050 872057 CACTCGATGGAGAAT GCGAAAGAGGGACGC CGCG GCGTCCCTCTTTCGT GGTTGGGGGCAAAGC TERM 986 872052 - 872083 + T 100 -23.2 -2.70932 | opp_overlap 872051 872050 872057, overlap 872057 ACTCGATGGAGAATG CGAAAGAGGGACGC CGCG GCGTCCCTCTTTCG TGGTTGGGGGCAAAG TERM 987 872057 - 872078 + T 100 -15.9 -3.84246 | opp_overlap 872057 872051 872050, overlap 872052 ATGGAGAATGCGAAA GAGGGACGC CGCG GCGTCCCTC TTTCGTGGTTGGGGG TERM 988 872078 - 872057 - T 100 -15.9 -3.69621 | opp_overlap 872052 872057, overlap 872051 872050 ATGGAGAATGCGAAA GAGGGACGC CGCG GCGTCCCTC TTTCGTGGTTGGGGG AHA_0814 873020 - 872100 - | putative N-acetylmuramoyl-L-alanine amidase AHA_0815 873503 - 873024 - | hypothetical protein TERM 989 873574 - 873562 - R 74 -4.7 -4.82901 | overlap 873563 CCCGCGTCAGAAAAA GCGGG TTG CCCGG TTCAGGATAGATAGC AHA_0816 876287 - 873576 - | hybrid sensory histidine kinase BarA rumA 876441 - 877763 + | 23S rRNA 5-methyluridine methyltransferase AHA_0818 878030 - 880240 + | GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((p)ppGpp synthetase) TERM 990 880286 - 880258 - f 71 -9.6 -3.56142 | gap 1, opp_overlap 880260 880261, overlap 880254 880259 GTCATCAACAACCAA CTCGTGACCGACC GCCA GGTCGGTCACT-G TTTTTCCCCTGCGTT TERM 991 880260 - 880286 + F 100 -13.1 -4.63184 | gap 1, opp_overlap 880258 880259 880254, overlap 880261 CATCAACAACCAACT C-GTGACCGACC GCCA GGTCGGTCACTG TTTTTCCCCTGCGTT TERM 992 880261 - 880284 + F 100 -16.8 -3.92746 | opp_overlap 880258 880259 880254, overlap 880260 ATCAACAACCAACTC GTGACCGACC GCCA GGTCGGTCAC TGTTTTTCCCCTGCG AHA_0819 880325 - 881122 + | MazG family protein pyrG 881264 - 882901 + | CTP synthetase TERM 993 882941 - 882913 - f 78 -5.8 -4.72188 | opp_overlap 882914, overlap 882914 GTAATTGAAAATAAA TGCGGTTGGGGC CCTGT GCCGCAGCCGCT TTTTTTGGCATATTT TERM 994 882914 - 882940 + F 100 -11.5 -5.46629 | opp_overlap 882914 882913 TAATTGAAAATAAAT GCGGTTGGGGC CCTGT GCCGCAGCCGC TTTTTTTGGCATATT TERM 995 883065 - 883079 + G 81 -6.4 -4.75472 | overlap 883066 CGTTGAGGCCGAAGT TCACCT GGA AGGTGG TTTTGTTGGTATGGC TERM 996 883661 - 883642 - g 70 -10 -3.66178 | GCTCCGAACCTGAAA TCCAACGC CGAA GCGCTGGA AGTGATCGCCGAAGC eno 882991 - 884292 + | phosphopyruvate hydratase TERM 997 884339 - 884320 - f 100 -16.4 -3.53811 | opp_overlap 884320 TCCACGCTTTGCAAA GCCCCGCC AATC GGCGGGGC TTTTTCGTTTCTGCT TERM 998 884320 - 884339 + F 100 -16.4 -5.05505 | opp_overlap 884320 TCCACGCTTTGCAAA GCCCCGCC AATC GGCGGGGC TTTTTCGTTTCTGCT AHA_0822 884471 - 884788 + | cell division protein ispD 884781 - 885512 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ispF 885509 - 885985 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase truD 885985 - 887043 + | tRNA pseudouridine synthase D surE 887024 - 887785 + | acid phosphatase SurE TERM 999 888260 - 888285 + G 78 -14.7 -3.04144 | GACGGCCCTCACTGA CCAGCTGGCCG ATGG TGGCCGGCTGG TGTTGCCGGTGGGGG pcm 887790 - 888407 + | protein-L-isoaspartate(D-aspartate) O-methyltransferase TERM 1000 888841 - 888853 + GF 73 -3.3 -4.77036 | GACCTCGCTGATCGG GCGTG GCA TGCGC TTTTTCCTGGTAGCA AHA_0828 888410 - 888985 + | hypothetical protein TERM 1001 889192 - 889182 - gf 77 -2.4 -5.04385 | TACACGGTGAAAAAA GGGG ACA CCCT CTACTCCATCGCCTT nlpD 888924 - 890036 + | lipoprotein NlpD rpoS 890084 - 891067 + | RNA polymerase sigma factor RpoS TERM 1002 891130 - 891104 - T 100 -13.8 -4.45544 | opp_overlap 891110, overlap 891110 GCTTACCAAGTAAAA CAAAAAGGGGCC AAA GGCCCCTTTTTC ATGCTGGCAGGATCC TERM 1003 891124 - 891110 - T 100 -12.8 -5.54338 | opp_overlap 891110, overlap 891104 CAAGTAAAACAAAAA GGGGCC AAA GGCCCC TTTTTCATGCTGGCA TERM 1004 891110 - 891124 + T 100 -12.8 -4.77036 | opp_overlap 891110 891104 CAAGTAAAACAAAAA GGGGCC AAA GGCCCC TTTTTCATGCTGGCA gcp 892165 - 891152 - | O-sialoglycoprotein endopeptidase TERM 1005 892087 - 892099 + g 78 -4.8 -4.77036 | GGCTATACAACTGGT GGGA AAGGA TCCC TTTTTGATCGTCGAA rpsU 892345 - 892560 + | ribosomal protein S21 AHA_0833 892575 - 893018 + | GatB/YqeY domain-containing protein TERM 1006 893047 - 893072 + F 100 -11.9 -5.8901 | gap 1, opp_overlap 893047 TGTTTGGTCAAAGAA GCCGTGC-TTCC CTG GGAATGCGCGGC TTTTTTATTTTCTAT TERM 1007 893072 - 893047 - f 76 -9.7 -3.90744 | gap 1, opp_overlap 893047 TGTTTGGTCAAAGAA GCCGTGC-TTCC CTG GGAATGCGCGGC TTTTTTATTTTCTAT TERM 1008 893874 - 893890 + G 74 -12.3 -3.40522 | opp_overlap 893874 CAAGCAGGCACACAA GGATCCG CGC CGGATCC TTGTGGTAGAAGGCT TERM 1009 893890 - 893874 - g 74 -12.3 -3.5361 | opp_overlap 893874 CAAGCAGGCACACAA GGATCCG CGC CGGATCC TTGTGGTAGAAGGCT dnaG 893107 - 894894 + | DNA primase TERM 1010 895017 - 895041 + F 81 -7.1 -4.6821 | opp_overlap 895023, overlap 895019 TCATGACCGACGCCG CAACCAGACAT AGC ATGTCTGGCGG TTTTCTATTAGAATT AHA_0835 895117 - 896973 + | RNA polymerase sigma factor RpoD TERM 1011 897026 - 897010 - T 100 -15.1 -4.57341 | opp_overlap 897010 AACCGCTGCCAAAAA GCCCCGC CAT GCGGGGC TTTGTTTTATCCGTG TERM 1012 897010 - 897026 + T 100 -15.1 -4.7878 | opp_overlap 897010 AACCGCTGCCAAAAA GCCCCGC CAT GCGGGGC TTTGTTTTATCCGTG TERM 1013 897251 - 897282 + T 100 -17.4 -3.92522 | opp_overlap 897258, overlap 897252 897254 897258 GGGGCCACCATTTTC AGACAAAGCCGCTC TCTT GAGCGGCTTTGTCG TTTCTGGCGTTCACC TERM 1014 897252 - 897281 + T 100 -20.9 -2.95192 | opp_overlap 897258, overlap 897251 897254 897258 GGGCCACCATTTTCA GACAAAGCCGCTC TCTT GAGCGGCTTTGTC GTTTCTGGCGTTCAC TERM 1015 897254 - 897279 + T 100 -17.7 -3.02632 | opp_overlap 897258, overlap 897252 897251 897258 GCCACCATTTTCAGA CAAAGCCGCTC TCTT GAGCGGCTTTG TCGTTTCTGGCGTTC TERM 1016 897275 - 897258 - T 93 -12.7 -4.04206 | opp_overlap 897254 897252 897251 897258 CCATTTTCAGACAAA GCCGCTC TCTT GAGCGGC TTTGTCGTTTCTGGC TERM 1017 897258 - 897275 + T 95 -12.7 -4.17701 | opp_overlap 897258, overlap 897254 897252 897251 CCATTTTCAGACAAA GCCGCTC TCTT GAGCGGC TTTGTCGTTTCTGGC TERM 1018 897635 - 897665 + T 84 -13.2 -3.13164 | opp_overlap 897638, overlap 897638 GCATGACGCCATAAA AAAGGCCTCCCGCC GAT GGTGGGAGGCCTGG TTCAGTGCTTCAGGG TERM 1019 897638 - 897662 + T 100 -19.3 -2.77235 | opp_overlap 897638, overlap 897635 TGACGCCATAAAAAA GGCCTCCCGCC GAT GGTGGGAGGCC TGGTTCAGTGCTTCA TERM 1020 897662 - 897638 - T 100 -17.1 -5.26316 | opp_overlap 897638 897635 TGACGCCATAAAAAA GGCCTCCCGCC GAT GGTGGGAGGCC TGGTTCAGTGCTTCA AHA_0837 900277 - 897701 - | alpha-amylase TERM 1021 900547 - 900525 - R 75 -11.3 -3.4617 | gap 1, opp_overlap 900523, overlap 900527 ATGAAGAGCAATGAA CA-GGGGCCC TGCA GGGCCCCATG AGTATTCAGGCGTCG TERM 1022 900544 - 900527 - R 95 -14.1 -3.29558 | opp_overlap 900523, overlap 900525 GAAGAGCAATGAACA GGGGCCC TGCA GGGCCCC ATGAGTATTCAGGCG AHA_0838 901107 - 900553 - | cytochrome B TERM 1023 901067 - 901035 - G 81 -15.6 -2.98823 | gap 1 GGTTGCCGATACAGA TGG-CCGCCACACCC CAGT GGGTGAGGCGGACCA GACTATCCCAGTGGA AHA_0839 901462 - 901088 - | hypothetical protein TERM 1024 901720 - 901705 - R 80 -11.8 -3.3353 | opp_overlap 901703 901705, overlap 901703 901701 CGCCGGATAAAGAGA GGGCCC TTGC GGGCCC TGTTCATTACTGCTG TERM 1025 901705 - 901720 + r 78 -11.8 -3.27743 | opp_overlap 901705 901703 901701, overlap 901703 CGCCGGATAAAGAGA GGGCCC TTGC GGGCCC TGTTCATTACTGCTG purD 903016 - 901727 - | phosphoribosylamine--glycine ligase TERM 1026 903119 - 903101 - R 100 -17.4 -4.91357 | AAAGAGACAACAAAA GGGCCGCC GAC GGCGGCCC TGATCCATCAGTGAC purH 904719 - 903127 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 1027 904845 - 904834 - H 75 -5.8 -4.56597 | overlap 904835 904836 CTCTCGCCTGAAAAA CCTG CCGA CAGG CAAAAGCGTTTTAGG zntR 905131 - 905568 + | zinc-responsive transcriptional regulator AHA_0843 905558 - 906094 + | riboflavin biosynthesis protein RibD domain-containing protein TERM 1028 906119 - 906147 + G 77 -2.1 -5.03314 | CAGCCCCCTTGCAGG CGGGCCGGGAGAG GCG CACAATCGGCACG TTTTTTCGCCGTCAG TERM 1029 906251 - 906236 - g 74 -9 -3.95324 | TATGGCCAAGAAGAA GGTGAC CCAG GTCACC ACCGAGCCCGCCTGC TERM 1030 906405 - 906445 + G 70 -11.8 -3.14132 | opp_overlap 906416 GGCAAGCGGTGGGAG CCCGGCCAACAGCAGATG GTACG CGTCTGCTGCTGAGCGGG TTCCTGCCGCAAGGC AHA_0844 906075 - 906440 + | hypothetical protein TERM 1031 906500 - 906472 - T 100 -23.3 -4.21462 | opp_overlap 906472, overlap 906475 AGGCATCAGCTAAAA CAATCAGGGCGCC AAT GGCGCCCTGATTG TTTCTCTATTCGTTG TERM 1032 906472 - 906500 + T 100 -23.3 -4.24534 | opp_overlap 906472 906475 AGGCATCAGCTAAAA CAATCAGGGCGCC AAT GGCGCCCTGATTG TTTCTCTATTCGTTG TERM 1033 906497 - 906475 - T 100 -19.2 -4.22883 | opp_overlap 906472, overlap 906472 CATCAGCTAAAACAA TCAGGGCGCC AAT GGCGCCCTGA TTGTTTCTCTATTCG TERM 1034 906514 - 906559 + T 74 -11.3 -3.18264 | gap 1, opp_overlap 906543, overlap 906516 TGTTTCTCTATTCGT TG-GTGCTGATTCACTCTCTTG CCG CAAGAGAGTGAACCCGTGCTCA TTCGTCCATAAAGAG TERM 1035 906516 - 906556 + T 83 -14.1 -2.79098 | opp_overlap 906543, overlap 906514 TTTCTCTATTCGTTG GTGCTGATTCACTCTCTTG CCG CAAGAGAGTGAACCCGTGC TCATTCGTCCATAAA AHA_0845 907702 - 906557 - | putative oxygen-independent coproporphyrinogen III oxidase TERM 1036 907786 - 907804 + r 75 -11.6 -3.35679 | opp_overlap 907763 907786 907787, overlap 907787 GCGCCGCGAACGAAA CGGGGGCC GAC GGCCCCCA TTGTAGATGACAACG TERM 1037 907804 - 907786 - R 93 -13.8 -3.90112 | opp_overlap 907786 907787, overlap 907763 907787 GCGCCGCGAACGAAA CGGGGGCC GAC GGCCCCCA TTGTAGATGACAACG TERM 1038 907803 - 907787 - R 86 -15.1 -2.93853 | opp_overlap 907786 907787, overlap 907763 907786 CGCCGCGAACGAAAC GGGGGCC GAC GGCCCCC ATTGTAGATGACAAC TERM 1039 907787 - 907803 + r 83 -15.1 -2.61264 | opp_overlap 907763 907787 907786, overlap 907786 CGCCGCGAACGAAAC GGGGGCC GAC GGCCCCC ATTGTAGATGACAAC rdgB 908433 - 907837 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 1040 908086 - 908112 + g 85 -14.4 -3.59979 | opp_overlap 908085, overlap 908074 CACGCACCAGAAACG GGCGCTCTTGAG ATA CTCGGGGGCGCC TTTCAGCTCGCCCAG AHA_0847 908662 - 909819 + | chloramphenicol resistance protein TERM 1041 909846 - 909862 + F 95 -15.1 -3.76232 | overlap 909860 TGATGGGCACACTCA GGGGGCC TTG GGCCCCC TTCTCTATTTGGCAG AHA_0848 909928 - 910977 + | oxidoreductase, NAD-binding TERM 1042 911149 - 911137 - T 71 -4.9 -4.55491 | opp_overlap 911137 CAGCCAACGAGAAAA TATCA TTG TGATA CTCGTTTTCATTGGG TERM 1043 911375 - 911347 - T 80 -10.9 -3.85698 | opp_overlap 911358, overlap 911353 GCTTGTGGTCAGAAA GAAGAAGCCGCCG CTC CGGCCGCTACTCC GGCCGCCGACGTTGC TERM 1044 911369 - 911353 - T 80 -9.3 -4.15703 | opp_overlap 911358, overlap 911347 GGTCAGAAAGAAGAA GCCGCCG CTC CGGCCGC TACTCCGGCCGCCGA TERM 1045 911554 - 911579 + T 100 -20.5 -5.61596 | opp_overlap 911533 911554 ACCTCATCTGAAGAA CGGGCCCGAAG GCAA CTTCGGGCCCG TTTTTTTATGCCCGT TERM 1046 911579 - 911554 - T 100 -20.5 -3.65224 | opp_overlap 911554, overlap 911533 ACCTCATCTGAAGAA CGGGCCCGAAG GCAA CTTCGGGCCCG TTTTTTTATGCCCGT TERM 1047 911652 - 911685 + T 71 -11.7 -2.52834 | gap 1, overlap 911651 AGAGTACCGGGTTGA GGCGCGCGGTGAGGAT ATG ATCCTCCCAGCG-GCC GTTGATCATCAGGTA AHA_0849 912186 - 911635 - | ribosomal-protein-alanine acetyltransferase AHA_0850 912740 - 912186 - | ribosomal-protein-serine acetyltransferase TERM 1048 912804 - 912820 + H 81 -8 -4.28977 | opp_overlap 912803 912804 ATGTAGCCAATCAAC CCCTTG TACGC CAAGGG TTTTCCATCTGTTCT TERM 1049 913795 - 913765 - g 71 -12.6 -3.05343 | opp_overlap 913765 913769, overlap 913769 TGGACACCCTCAACA TGAATCACGCCACC ACG GGCGGCGCCATTCA TCAGTTCACCTGCCC AHA_0851 913092 - 914861 + | elastase TERM 1050 914888 - 914907 + T 100 -15 -5.61596 | opp_overlap 914888 CGTAATAGAGATAGA GCGCCGGA CTTG TCCGGCGC TTTTTTTATGCGGAT TERM 1051 914907 - 914888 - T 91 -15 -3.10895 | opp_overlap 914888 CGTAATAGAGATAGA GCGCCGGA CTTG TCCGGCGC TTTTTTTATGCGGAT AHA_0852 915806 - 914913 - | LysR family transcriptional regulator AHA_0853 916021 - 917214 + | multidrug resistance protein MdtH TERM 1052 917247 - 917229 - T 100 -17.4 -5.45652 | ACGGGCAATAAAAAA CCGGCCGC TGG GCGGCCGG TAAAAAATACAGTAG AHA_0854 918352 - 917279 - | outer membrane porin protein TERM 1053 918508 - 918524 + r 80 -10.8 -3.83324 | opp_overlap 918508, overlap 918499 AGCAGGCATAAAAAA CGGCCC GAACA GGGCCG TTTGCGTGTTTGTGG TERM 1054 918524 - 918508 - R 100 -10.8 -5.28778 | opp_overlap 918508 918499 AGCAGGCATAAAAAA CGGCCC GAACA GGGCCG TTTGCGTGTTTGTGG AHA_0855 919872 - 918553 - | anaerobic C4-dicarboxylate transporter DcuA TERM 1055 919963 - 919921 - R 100 -13.5 -4.37886 | opp_overlap 919921 TTATTTGGCAGAAAA GCCAATTCCCGATGGGGCT GGGCA AGACCTATCGGGAACTGAC TTTATGGGCCGGGAT TERM 1056 919921 - 919963 + r 82 -11.3 -3.85817 | opp_overlap 919921 TTATTTGGCAGAAAA GCCAATTCCCGATGGGGCT GGGCA AGACCTATCGGGAACTGAC TTTATGGGCCGGGAT TERM 1057 919968 - 919990 + r 100 -16.3 -3.80858 | opp_overlap 919963 CGGGAACTGACTTTA TGGGCCGGG ATAAA CCCGGCCCA TTTGCTCGCTTATAC aspA 921442 - 920000 - | aspartate ammonia-lyase TERM 1058 921717 - 921728 + H 77 -3.6 -4.99035 | opp_overlap 921715 921713, overlap 921713 GACTTCAATCACAGT CTGG CAGA CCGG TTTTTCTGTGGATCC AHA_0857 921814 - 922368 + | protein FxsA AHA_0858 923792 - 922392 - | Na(+) driven multidrug efflux pump TERM 1059 922805 - 922830 + g 86 -12.5 -4.09685 | gap 1, opp_overlap 922788, overlap 922805 GCAGCGCCGCCTTGG C-GCGGGCCGGG TTG CCCGCCCCGCAG TTTTGCGAGATGAAG TERM 1060 922805 - 922829 + g 71 -12.7 -3.05597 | opp_overlap 922788, overlap 922805 GCAGCGCCGCCTTGG CGCGGGCCGGG TTG CCCGCCCCGCA GTTTTGCGAGATGAA groS 923975 - 924268 + | chaperonin GroS groL 924310 - 925944 + | chaperonin GroEL TERM 1061 925964 - 925983 + F 100 -12.8 -5.93809 | opp_overlap 925964 GCCCTGGTTACCAAA CGGCTCGC TTTT GCGGGCCG TTTTTTTTATGGCGA TERM 1062 925983 - 925964 - f 76 -10.6 -3.72576 | opp_overlap 925964 GCCCTGGTTACCAAA CGGCTCGC TTTT GCGGGCCG TTTTTTTTATGGCGA AHA_0861 926082 - 926537 + | oxidoreductase molybdopterin binding subunit TERM 1063 927074 - 927094 + G 73 -12.5 -3.24747 | opp_overlap 927065 GACAAACGCTTTGGC CAGCTGCGC AAT GCGCTGCTG TTCATGGTCTCAGGG AHA_0862 926561 - 928492 + | PAS/GGDEF domain-containing protein TERM 1064 928668 - 928653 - T 70 -9 -3.65827 | GAATCTGCATTGAAA CTGCTG CAAA CAGCAG CTCAATCAGCACCGG TERM 1065 928775 - 928753 - T 100 -14.9 -4.87291 | opp_overlap 928753 GACCCTAACGAAAAA GCCCCCATC CAGTC GATGGGGGC TTTTTTATGTCTGCG TERM 1066 928753 - 928775 + T 100 -14.9 -5.4251 | opp_overlap 928753 GACCCTAACGAAAAA GCCCCCATC CAGTC GATGGGGGC TTTTTTATGTCTGCG AHA_0863 929469 - 928813 - | ribosomal large subunit pseudouridine synthase A AHA_0864 932446 - 929579 - | ATP-dependent helicase HepA TERM 1067 929747 - 929771 + g 74 -12.8 -3.30124 | overlap 929765 CAGATCCTGTTGCAG GGTCTGCGCC ATCTG GGCGCGGGCC TTGTCGACAATCCCG TERM 1068 934899 - 934862 - H 77 -11.5 -3.61398 | opp_overlap 934867, overlap 934865 TCTTCTTGCTAACAA GAATGCAGAGTTAAGAA CTGA TTCTTAACTCTGTTTTC TTCAGCCTTGTGCTG TERM 1069 934896 - 934865 - H 71 -7.4 -3.9461 | opp_overlap 934867, overlap 934862 TCTTGCTAACAAGAA TGCAGAGTTAAGAA CTGA TTCTTAACTCTGTT TTCTTCAGCCTTGTG TERM 1070 934867 - 934894 + H 100 -14.4 -4.65747 | opp_overlap 934865 934862 TTGCTAACAAGAATG CAGAGTTAAGAA CTGA TTCTTAACTCTG TTTTCTTCAGCCTTG TERM 1071 935022 - 935008 - H 74 -7.2 -4.07687 | opp_overlap 934998 935002 935008 ACTTCTTGGCGAAAA CCAAAT TTT ATTTGG TCCTTGTTGTACGAC TERM 1072 935070 - 935040 - H 73 -10.4 -3.40403 | opp_overlap 935046, overlap 935043 CTTGTTGTACGACAA CAAGCTGCGTCGGT TTC ACCGACACTTCTTG GGGTTGTATGGTTAA TERM 1073 935046 - 935064 + H 70 -8.8 -3.70081 | opp_overlap 935043 935040 GTACGACAACAAGCT GCGTCGGT TTC ACCGACAC TTCTTGGGGTTGTAT TERM 1074 935568 - 935556 - H 84 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 1075 938235 - 938216 - H 100 -15 -4.46675 | opp_overlap 938216 ACCCAATACAAGAAA CCCCGCTC AGAT GAGCGGGG TTTTTTATTGCCTGA TERM 1076 938216 - 938235 + H 100 -15 -5.4833 | opp_overlap 938216 ACCCAATACAAGAAA CCCCGCTC AGAT GAGCGGGG TTTTTTATTGCCTGA AHA_0869 938489 - 938941 + | putative pullulanase TERM 1077 938984 - 939015 + F 100 -18.8 -5.44119 | gap 1, overlap 938985 CGATGAATCGGTCAA TGCCCCGGCTCAGCA CAC TGCTG-GCCGGGGCG TTTTTTTAGGATGAG TERM 1078 938985 - 939014 + F 100 -20.1 -3.85748 | gap 1, overlap 938984 GATGAATCGGTCAAT GCCCCGGCTCAGCA CAC TGCTG-GCCGGGGC GTTTTTTTAGGATGA TERM 1079 939048 - 939073 + F 86 -7.1 -5.10665 | AGGCTCTCTTGTTAT TAAAAATACTA CATA TAGTGTTTTTA TTTTGTTTGTTCGCT TERM 1080 939560 - 939579 + G 78 -7 -4.54047 | overlap 939561 GGCTATGATTTTTCA ACCCTGCG CCCG CGCGGGGC TTTTGTCTCCGGTGC AHA_0870 939149 - 941296 + | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent AHA_0871 941307 - 941987 + | ribonucleotide reductase system TERM 1081 941996 - 942041 + F 100 -17.1 -4.66537 | gap 2, opp_overlap 942008, overlap 941998 942002 CGGTTGAGTGATTGA GC-GCAG-GCAAAAGGCCGGC CTTGGT GCCGGCCTTTTGCATTGCTGC TTTTCTGTTCGAACG TERM 1082 941998 - 942038 + F 100 -18.5 -3.26141 | gap 1, opp_overlap 942008, overlap 941996 942002 GTTGAGTGATTGAGC GCAG-GCAAAAGGCCGGC CTTGGT GCCGGCCTTTTGCATTGC TGCTTTTCTGTTCGA TERM 1083 942002 - 942033 + F 100 -20.3 -2.63109 | opp_overlap 942008, overlap 941998 941996 AGTGATTGAGCGCAG GCAAAAGGCCGGC CTTGGT GCCGGCCTTTTGC ATTGCTGCTTTTCTG TERM 1084 942027 - 942008 - f 91 -12.1 -4.1899 | opp_overlap 942002 941998 941996 TGAGCGCAGGCAAAA GGCCGGC CTTGGT GCCGGCC TTTTGCATTGCTGCT TERM 1085 942291 - 942277 - g 70 -10 -3.54543 | ATCTACTCCTTCAAA GAGCAC GAC GTGCTC ATCCCCATGACGGTG TERM 1086 943101 - 943089 - g 76 -7.7 -4.2828 | GGGGATCTACGAAAA GGTGA TCG TCACC CGAAATACCCCGGAA AHA_0872 942196 - 943566 + | PhoH family protein TERM 1087 943594 - 943613 + T 100 -13.6 -5.15634 | opp_overlap 943594 TCTTCGTATGAAAAA GGGAAGCC AAGC GGCTTCCC TTTTTTGATCCCGTC TERM 1088 943613 - 943594 - T 100 -13.6 -4.72272 | opp_overlap 943594 TCTTCGTATGAAAAA GGGAAGCC AAGC GGCTTCCC TTTTTTGATCCCGTC AHA_0873 943744 - 943634 - | hypothetical protein thiQ 944511 - 943804 - | thiamine ABC transporter, ATP-binding protein TERM 1089 944128 - 944176 + g 71 -9.4 -3.73068 | GCCGCCGGAGAGCTG TTCCGGGAGTCGGGTGAGCATC TCGCC GAGGCCAACCCGGCTCGCGGCA TTCTTCACTTGGGCC thiP 946199 - 944577 - | thiamine/thiamine pyrophosphate ABC transporter, permease protein TERM 1090 945964 - 945940 - G 76 -11.4 -3.72576 | gap 1, overlap 945925 945941 CGGCGGCCGATGAAA CGGCGCCGCGC CAGG GCGCGG-GCCA CCGGAATGGCCAGCC TERM 1091 945963 - 945941 - G 70 -12.7 -2.83403 | gap 1, overlap 945925 945940 GGCGGCCGATGAAAC GGCGCCGCGC CAGG GCGCGG-GCC ACCGGAATGGCCAGC TERM 1092 946109 - 946094 - G 70 -11.8 -3.21276 | overlap 946092 CGGCCTGCCACAACA GGGCCG CCAG CGGCCC CAGGGAGAGCAGCAG thiB 947176 - 946196 - | thiamin/thiamin pyrophosphate ABC transporter, periplasmic thiamin/thiamin pyrophospate-binding protein TERM 1093 946973 - 947017 + g 81 -13.5 -3.57144 | GTGTTTGCCTTCCAG CCGCAGCCGGTTGAGGATGGC CAC GCCATCTTCAAGCGGCACCAG TTTGAGGGTGCAGCC TERM 1094 947242 - 947227 - H 77 -4 -5.02074 | gap 1 TGAGGGCGCAAAAAA TGAGCGC CAT GC-CTCA AATTCCTCCGCCAGC TERM 1095 947629 - 947604 - g 76 -9 -3.99374 | gap 1, overlap 947598 GGCCACCAACAACAA CCTGCTGCCCC CCTTC GAGGC-GCAGG CCCGCATCATCCGGG AHA_0877 947341 - 947700 + | type IV pilus assembly protein PilZ TERM 1096 947727 - 947749 + T 100 -13.5 -4.00124 | ACCCTTCGTCATGCA TCGACCAGC CCCGC GCTGGTCGA TTTCCTTCTGGCGTA AHA_0878 948729 - 947803 - | hypothetical protein TERM 1097 948813 - 948794 - R 100 -13.6 -4.77165 | opp_overlap 948794 948790 GGCCTGACAACAAAA CAGGGAGC CGCG GCTCCCTG TTGATTCTACTCGTT TERM 1098 948794 - 948813 + r 89 -13.6 -3.48438 | opp_overlap 948794, overlap 948790 GGCCTGACAACAAAA CAGGGAGC CGCG GCTCCCTG TTGATTCTACTCGTT leuD 949445 - 948846 - | isopropylmalate isomerase small subunit TERM 1099 949086 - 949098 + g 71 -9.1 -3.73534 | CTCCTTCAGCCGCAC CGGCA CCA TGCCG TTGTTGATGGCGTTG TERM 1100 949253 - 949207 - G 88 -16.7 -3.35679 | opp_overlap 949206 CGGCTCGAGCCACAA CCGAAGTTCTCGCGG-GCCAGCA GGA TGCTGGCACCG-GCGAACTGCGG CTGGTTGAGCACGAA leuC 950855 - 949458 - | 3-isopropylmalate dehydratase, large subunit leuB 951973 - 950888 - | 3-isopropylmalate dehydrogenase leuA-1 953550 - 951976 - | 2-isopropylmalate synthase TERM 1101 953624 - 953606 - H 100 -14.6 -5.60993 | opp_overlap 953579 953606 GTTGGCATAAAAAAA CCCGTGCA GGG TGCACGGG TTTTTGTAAATTCCG TERM 1102 953606 - 953624 + H 100 -14.6 -4.91712 | opp_overlap 953606, overlap 953579 GTTGGCATAAAAAAA CCCGTGCA GGG TGCACGGG TTTTTGTAAATTCCG AHA_0883 953958 - 954581 + | transcriptional regulator, TetR family protein TERM 1103 954627 - 954600 - f 79 -12.8 -2.91264 | opp_overlap 954607, overlap 954607 TTTGCCACCTAGACA GCAAAAAGGGCC ATTC GGCCCTTTTTTC ATAAATCTGTTATCC TERM 1104 954620 - 954607 - f 100 -9.5 -4.84527 | opp_overlap 954607, overlap 954600 CCTAGACAGCAAAAA GGGCC ATTC GGCCC TTTTTTCATAAATCT TERM 1105 954607 - 954620 + F 100 -9.5 -5.17353 | opp_overlap 954607 954600 CCTAGACAGCAAAAA GGGCC ATTC GGCCC TTTTTTCATAAATCT AHA_0884 954707 - 955207 + | PAP2 family protein AHA_0885 955207 - 956316 + | glycosyl transferase AHA_0886 956353 - 956505 + | hypothetical protein TERM 1106 956522 - 956546 + F 100 -5.6 -5.53288 | overlap 956507 956525 CCCCTGCCAGGCTTG CGGGCCCACC CTGGC GGTGGGCTTA TTTTTTTCCATTCAG TERM 1107 956525 - 956543 + F 100 -11.7 -4.83715 | overlap 956507 956522 CTGCCAGGCTTGCGG GCCCACC CTGGC GGTGGGC TTATTTTTTTCCATT ilvB-1 956895 - 958613 + | acetolactate synthase, large subunit, biosynthetic type AHA_0888 958586 - 958708 + | hypothetical protein ilvH 958705 - 959199 + | acetolactate synthase 3 regulatory subunit TERM 1108 959230 - 959245 + T 100 -10.4 -4.72272 | opp_overlap 959230 959229, overlap 959222 GTTTGTTGTCCAAAG GGGCTC TTCG GAGCCC TTTTTCATGGGCGCA TERM 1109 959565 - 959550 - T 100 -11.8 -5.96219 | opp_overlap 959550 CAGCCATAAAAAAAA CCCGCC AATT GGCGGG TTTTTGAGGTCTCAT TERM 1110 959550 - 959565 + T 100 -11.8 -4.65168 | opp_overlap 959550 CAGCCATAAAAAAAA CCCGCC AATT GGCGGG TTTTTGAGGTCTCAT AHA_0890 961746 - 959593 - | phosphate acetyltransferase TERM 1111 961782 - 961799 + r 95 -14.1 -3.25823 | opp_overlap 961782 TTGGGATCAGGAAAA GGCCGCC CTTG GGCGGCC TTGCTCTACAGCGAA TERM 1112 961799 - 961782 - R 100 -14.1 -4.30576 | opp_overlap 961782 TTGGGATCAGGAAAA GGCCGCC CTTG GGCGGCC TTGCTCTACAGCGAA ackA-1 963018 - 961816 - | acetate kinase AHA_0892 963321 - 963761 + | hypothetical protein TERM 1113 963803 - 963788 - T 76 -11.8 -3.15861 | opp_overlap 963788 CATGACTCGGACCAA GGCGCC TCGC GGCGCC TTTTTCATATCTATC TERM 1114 963788 - 963803 + T 100 -11.8 -4.86133 | opp_overlap 963788 CATGACTCGGACCAA GGCGCC TCGC GGCGCC TTTTTCATATCTATC AHA_0893 964317 - 963817 - | hypothetical protein TERM 1115 964306 - 964321 + g 71 -5.4 -4.42386 | CAGACGTTCGGTGTG GCTCAT GTTC ATGGGC TTTTCTCACTGGAAA TERM 1116 964681 - 964700 + r 95 -15 -3.71873 | opp_overlap 964681 ATGCGAATAAAAAAA GGGCCTGC ACTT GCAGGCCC TTTCCATATGGGTAG TERM 1117 964700 - 964681 - R 100 -15 -5.80364 | opp_overlap 964681 ATGCGAATAAAAAAA GGGCCTGC ACTT GCAGGCCC TTTCCATATGGGTAG AHA_0894 965196 - 964732 - | putative peroxiredoxin bcp AHA_0895 966036 - 965218 - | glycine cleavage system transcriptional repressor TERM 1118 966553 - 966581 + GH 100 -15.3 -3.96624 | CCGTACGCCGCTGCT GCGCGAGCTGTGC GGC GCACAATTCGCGC TTTATAGTGGCGATG dapA-1 966035 - 966922 + | dihydrodipicolinate synthase AHA_0897 966915 - 968039 + | NlpB/DapX lipoprotein TERM 1119 968071 - 968032 - f 83 -7.3 -4.62872 | gap 1, opp_overlap 968043, overlap 968043 ACCAAGCTGCAAAAA CAGAATAGAAACAGGGGC CTTGT GCCCCTGTTT-TGTTATG TAAACCCCCCACAAA TERM 1120 968061 - 968043 - f 95 -11.7 -4.3821 | opp_overlap 968043, overlap 968032 AAAACAGAATAGAAA CAGGGGC CTTGT GCCCCTG TTTTGTTATGTAAAC TERM 1121 968043 - 968061 + F 100 -11.7 -4.84311 | opp_overlap 968043 968032 AAAACAGAATAGAAA CAGGGGC CTTGT GCCCCTG TTTTGTTATGTAAAC purC 968093 - 969208 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 1122 969290 - 969310 + T 100 -9.6 -5.08601 | opp_overlap 969290, overlap 969291 CTGGCTGCAATGGAA CGGGCCCC ATCAC GGGGCCCA TTTTTGTTGCCGTGC TERM 1123 969310 - 969290 - T 83 -12.5 -3.17075 | opp_overlap 969290 969291 CTGGCTGCAATGGAA CGGGCCCCA TCA CGGGGCCCA TTTTTGTTGCCGTGC TERM 1124 969291 - 969309 + T 86 -13.1 -3.64438 | opp_overlap 969290, overlap 969290 TGGCTGCAATGGAAC GGGCCCC ATCAC GGGGCCC ATTTTTGTTGCCGTG AHA_0899 969942 - 969340 - | short chain dehydrogenase TERM 1125 970015 - 969999 - H 74 -2.9 -4.97402 | opp_overlap 970001 GAAAAGGGAGAAAAA GCGCGTA AAA TAAACGC ATTGTTTCCATATTG AHA_0900 970041 - 970940 + | LysR family transcriptional regulator TERM 1126 971610 - 971624 + G 76 -10 -3.89346 | CTCAAGGCCGACCCT GCGCTT CGC AAGCGC TTTGTCAGCTGGGCC AHA_0901 971067 - 971654 + | hypothetical protein AHA_0902 971727 - 972164 + | HIT family hydrolase AHA_0903 972263 - 972961 + | hypothetical protein TERM 1127 973014 - 972984 - T 95 -15.4 -3.53091 | opp_overlap 972987, overlap 972987 ATTGGCCGTTGCAAA TGACGAGGCCACCC ATG GGGTGGCCTCGTTT GTTGGTGCGGGTCGG TERM 1128 972987 - 973011 + T 100 -21.5 -4.2461 | opp_overlap 972984 972987 GGCCGTTGCAAATGA CGAGGCCACCC ATG GGGTGGCCTCG TTTGTTGGTGCGGGT TERM 1129 973011 - 972987 - T 100 -21.5 -2.90496 | opp_overlap 972987, overlap 972984 GGCCGTTGCAAATGA CGAGGCCACCC ATG GGGTGGCCTCG TTTGTTGGTGCGGGT AHA_0904 974030 - 973032 - | hypothetical protein TERM 1130 976400 - 976386 - g 72 -2.7 -4.73682 | overlap 976388 GCGCACAAGATAAAA GGGGC GGCCG GCTCC ATCGGTCTGCGCCGG AHA_0905 974238 - 976550 + | aerobic respiration control sensor protein ArcB TERM 1131 977810 - 977785 - g 74 -14.7 -2.53876 | CGTCATCTCAAGGCA TACCGGCTGGC GGTG GCCAGCCGGGA TCCGCGCTTCAGCGA dgt 976579 - 977934 + | deoxyguanosinetriphosphate triphosphohydrolase TERM 1132 977982 - 978008 + F 76 -10.1 -3.89348 | opp_overlap 977983, overlap 977983 GAGTATTGATAGATG ACTCACCTCCC CATAT GGGGGGTGAGG TTCTTGTATAAAATT TERM 1133 978007 - 977983 - f 72 -12.2 -2.70528 | gap 1, opp_overlap 977983 977982 AGTATTGATAGATGA CTCACCTCCCC ATAT GGGG-GGTGAG GTTCTTGTATAAAAT TERM 1134 977983 - 978007 + F 81 -13.6 -2.92886 | opp_overlap 977983, overlap 977982 AGTATTGATAGATGA CTCACCTCCC CATAT GGGGGGTGAG GTTCTTGTATAAAAT TERM 1135 978125 - 978144 + F 77 -4.2 -4.83615 | overlap 978127 CGACCGCTGCATCAG CAGCGCGA AGAC TCGTGCTC TTTTTCTGCCGCGTG TERM 1136 978166 - 978180 + F 85 -4.2 -5.24129 | opp_overlap 978167, overlap 978167 TGCCGCGTGGAGGAA ACAGGT AAC ACCTGC TTTTTTATCACCCGC TERM 1137 978188 - 978213 + F 74 -11.2 -3.22618 | gap 1, overlap 978186 ACACCTGCTTTTTTA TCACCC-GCGG TTGTC CCGCAGGGTGA TCTCTTCTCTCCGGG AHA_0907 978257 - 978460 + | hypothetical protein TERM 1138 978466 - 978481 + F 71 -8.2 -3.81146 | opp_overlap 978466 978464 978456, overlap 978464 978479 AATAACCTGACAAGA GGGGGT CTTG GCCCCC TTCTTGCTTGAAAAC TERM 1139 978496 - 978515 + F 100 -15 -4.8048 | opp_overlap 978496, overlap 978479 CTTCTTGCTTGAAAA CGGCAGGC GTGA GCCTGCCG TTTTTCGTATCCGGA TERM 1140 978515 - 978496 - f 100 -15 -4.07568 | opp_overlap 978496 978479 CTTCTTGCTTGAAAA CGGCAGGC GTGA GCCTGCCG TTTTTCGTATCCGGA AHA_0908 978610 - 982887 + | virulence sensor protein BvgS, putative AHA_0909 982892 - 984079 + | response regulator AHA_0910 984118 - 986094 + | putative chemotaxis transducer TERM 1141 986153 - 986104 - T 100 -25.9 -3.31144 | opp_overlap 986116, overlap 986105 986116 GCCTGAGGCTGACAA GGGCCATAAAAACGGGGCAGGCC GCTG GGCCTGCCCCGTTTTTTTAGCCT CGCTGGTGCAAGAGA TERM 1142 986152 - 986105 - T 100 -29.4 -2.58544 | opp_overlap 986116, overlap 986104 986116 CCTGAGGCTGACAAG GGCCATAAAAACGGGGCAGGCC GCTG GGCCTGCCCCGTTTTTTTAGCC TCGCTGGTGCAAGAG TERM 1143 986141 - 986116 - T 100 -21.9 -4.8543 | opp_overlap 986116, overlap 986105 986104 CAAGGGCCATAAAAA CGGGGCAGGCC GCTG GGCCTGCCCCG TTTTTTTAGCCTCGC TERM 1144 986116 - 986141 + T 100 -21.9 -5.44119 | opp_overlap 986116 986105 986104 CAAGGGCCATAAAAA CGGGGCAGGCC GCTG GGCCTGCCCCG TTTTTTTAGCCTCGC AHA_0911 986318 - 986214 - | hypothetical protein rfaH 986871 - 986320 - | transcriptional activator RfaH TERM 1145 986680 - 986709 + g 73 -3.3 -4.81249 | overlap 986682 GGGGAACATGGGCTC CCGCACCGGGACA CGCT TGCCCCGCCGCAG TTTTTCAATTTCCAC TERM 1146 986897 - 986879 - R 100 -16 -6.15828 | opp_overlap 986879 GGCAGCAAAAAAAAA GGCCACGC ATT GCGTGGCC TTTTTTGCCGAGTGA TERM 1147 986879 - 986897 + r 100 -16 -5.02074 | opp_overlap 986879 GGCAGCAAAAAAAAA GGCCACGC ATT GCGTGGCC TTTTTTGCCGAGTGA metQ 987717 - 986917 - | D-methionine ABC transporter, periplasmic D-methionine-binding lipoprotein metI 988396 - 987743 - | D-methionine ABC transporter, permease protein TERM 1148 988249 - 988271 + g 83 -15.6 -3.16564 | TACGGTTGAGCAGCG GGTTGGCCAG GAT CTGGCCAGCC TTGGTCACGTGCAGC metN 989420 - 988377 - | DL-methionine transporter ATP-binding subunit TERM 1149 988948 - 988980 + g 71 -11.2 -3.51934 | gap 1, overlap 988946 AGCAGTACCTTGGGG GCCGG-CGCCAGCGC CCGG GCGATGGCGACCCGC TGTTTCTGGCCACCG AHA_0916 989577 - 990347 + | hypothetical protein TERM 1150 990455 - 990398 - T 100 -20.7 -4.60889 | gap 1, opp_overlap 990413 990416, overlap 990411 AAGTAGGGTGAAAAA TGGGCGCTGAAAACACAAGAGGCCCGGC AAT GCCGGGCCTCTTGTGTTCACGACGGC-A TCATGCCGACTGGCG TERM 1151 990443 - 990411 - T 100 -27.9 -4.08064 | opp_overlap 990413 990416, overlap 990398 AATGGGCGCTGAAAA CACAAGAGGCCCGGC AAT GCCGGGCCTCTTGTG TTCACGACGGCATCA TERM 1152 990413 - 990441 + T 100 -24.7 -3.01791 | opp_overlap 990411 990398, overlap 990416 TGGGCGCTGAAAACA CAAGAGGCCCGGC AAT GCCGGGCCTCTTG TGTTCACGACGGCAT TERM 1153 990416 - 990438 + T 100 -20.6 -3.65812 | opp_overlap 990411 990398, overlap 990413 GCGCTGAAAACACAA GAGGCCCGGC AAT GCCGGGCCTC TTGTGTTCACGACGG AHA_0917 991214 - 990456 - | polyphosphate glucokinase TERM 1154 990646 - 990636 - G 73 -6.8 -4.27117 | GGGGGAGAACAGAAA CTCG AGG CGAG CCAGGTACTTGTTGA AHA_0918 992539 - 991298 - | iron-sulfur cluster-binding protein AHA_0919 992600 - 994111 + | YjeF protein TERM 1155 994481 - 994459 - g 71 -8.3 -3.86015 | overlap 994430 GAGTGGCCGGAGAAA GGGGAAGGC TGGCT GCCCGCCCC CGATCTCGACATTAC AHA_0920 994120 - 994593 + | hypothetical protein AHA_0921 994584 - 996149 + | N-acetylmuramoyl-L-alanine amidase mutL 996379 - 998247 + | DNA mismatch repair protein MutL TERM 1156 998340 - 998352 + G 75 -3.4 -4.91109 | TTTTACGTGGCTGAC TTGC CGACT GCAA TTTTTCTGATGGGGC TERM 1157 998553 - 998563 + G 78 -6.8 -4.57569 | CCTGCCGTGAGCTAT TCGG CGG CCGA TTTTTGCAAGGATGC miaA 998340 - 999257 + | tRNA delta(2)-isopentenylpyrophosphate transferase hfq 999328 - 999591 + | RNA chaperone Hfq TERM 1158 1000146 - 1000174 + G 79 -9.6 -4.1899 | gap 1 GCTGGAAACCGACCG TCGCC-TGTTGCG TGAG CGCATCAAGGCGA TTTTGCGTCGGCTCG AHA_0925 999655 - 1000941 + | GTP-binding protein HflX TERM 1159 1001098 - 1001112 + G 70 -10 -3.5393 | opp_overlap 1001098 GAACAACGGCAAGAA TCAGGG ACC CCCTGA TTTGGACGAGATGCT TERM 1160 1001112 - 1001098 - g 74 -10 -3.70751 | opp_overlap 1001098 GAACAACGGCAAGAA TCAGGG ACC CCCTGA TTTGGACGAGATGCT hflK 1001033 - 1002184 + | HflK protein hflC 1002188 - 1003072 + | HflC protein TERM 1161 1003118 - 1003089 - f 73 -10.7 -3.39784 | opp_overlap 1003094, overlap 1003087 1003094 CGAGTCGTAATAACA CCCAAGGGCCTGA TGAT TCAGGCCCTTTTG TTTGCCGGCCGGGGG TERM 1162 1003113 - 1003094 - f 87 -13.6 -3.24423 | opp_overlap 1003094, overlap 1003089 1003087 CGTAATAACACCCAA GGGCCTGA TGAT TCAGGCCC TTTTGTTTGCCGGCC TERM 1163 1003094 - 1003113 + F 100 -13.6 -4.86731 | opp_overlap 1003094 1003089 1003087 CGTAATAACACCCAA GGGCCTGA TGAT TCAGGCCC TTTTGTTTGCCGGCC AHA_0928 1003184 - 1003372 + | hypothetical protein TERM 1164 1003413 - 1003442 + T 100 -18.1 -3.30159 | opp_overlap 1003413 1003420, overlap 1003420 GTGTTTGCCAGACAA CAAAAAAGAGGCC CTTT GGCCTCTTTTTTG TTGTCCGCCGATTGG TERM 1165 1003442 - 1003413 - T 100 -18.1 -3.48276 | opp_overlap 1003413 1003420, overlap 1003420 GTGTTTGCCAGACAA CAAAAAAGAGGCC CTTT GGCCTCTTTTTTG TTGTCCGCCGATTGG TERM 1166 1003420 - 1003435 + T 100 -10.4 -5.55769 | opp_overlap 1003413 1003420, overlap 1003413 CCAGACAACAAAAAA GAGGCC CTTT GGCCTC TTTTTTGTTGTCCGC TERM 1167 1003435 - 1003420 - T 100 -10.4 -5.60689 | opp_overlap 1003420 1003413, overlap 1003413 CCAGACAACAAAAAA GAGGCC CTTT GGCCTC TTTTTTGTTGTCCGC AHA_0929 1004431 - 1003460 - | octaprenyl-diphosphate synthase rplU 1004674 - 1004985 + | ribosomal protein L21 rpmA 1005003 - 1005260 + | 50S ribosomal protein L27 TERM 1168 1005283 - 1005302 + F 100 -16.4 -5.35224 | opp_overlap 1005277 CCGCAAGGATCCGAA GCCCCGCC AACA GGCGGGGC TTTTGTTTTTCTGCA obgE 1005451 - 1006653 + | GTPase ObgE TERM 1169 1006722 - 1006701 - f 100 -15.9 -3.85698 | opp_overlap 1006701 CCCGGTGCTGAGAAA CCGGAGCCT TCCC AGGCTCCGG TTTTTTTTATGGGGA TERM 1170 1006701 - 1006722 + F 100 -15.9 -5.93809 | opp_overlap 1006701 CCCGGTGCTGAGAAA CCGGAGCCT TCCC AGGCTCCGG TTTTTTTTATGGGGA AHA_0933 1007048 - 1008418 + | membrane protein TERM 1171 1008440 - 1008459 + T 100 -10 -5.60993 | overlap 1008453 TCGCGCCTTGTCACA CGGTCAAC TTCG GTTGGCCG TTTTTTTATGGCCGA TERM 1172 1010326 - 1010298 - T 83 -12.6 -3.28924 | gap 1, opp_overlap 1010306, overlap 1010299 1010306 GAGTGGCGGTGACAA CGGAAAAAGGGCC TGCG GGCCCTTTTT-CG TCAGCGTCCAAGCGG TERM 1173 1010326 - 1010299 - T 75 -12.8 -2.57211 | opp_overlap 1010306, overlap 1010298 1010306 AGTGGCGGTGACAAC GGAAAAAGGGCC TGCG GGCCCTTTTTCG TCAGCGTCCAAGCGG TERM 1174 1010306 - 1010319 + T 95 -9.5 -4.72986 | opp_overlap 1010298 1010299 1010306 GTGACAACGGAAAAA GGGCC TGCG GGCCC TTTTTCGTCAGCGTC TERM 1175 1010319 - 1010306 - T 95 -9.5 -4.78149 | opp_overlap 1010306, overlap 1010298 1010299 GTGACAACGGAAAAA GGGCC TGCG GGCCC TTTTTCGTCAGCGTC AHA_0935 1010680 - 1010327 - | hypothetical protein AHA_0936 1011107 - 1010757 - | hypothetical protein AHA_0937 1014212 - 1011240 - | chemotaxis sensory transducer family protein TERM 1176 1011918 - 1011945 + g 70 -7.7 -4.07885 | gap 1 GCGCAGCCAGGTGCG GCTGGCGATGGC ATCCA GCC-TGGCCAGC TTTTCCGGCGCCATC TERM 1177 1012726 - 1012683 - G 70 -10.3 -3.54424 | overlap 1012685 GGCCAGCTCGCCAAA CAGGGCCTGCTGCCAG-CGGA TCTG TCCGGCCGGCAGC-GGCGCTT GGCGCCACAGCGCCT TERM 1178 1012724 - 1012685 - G 74 -12.9 -3.35046 | overlap 1012683 CCAGCTCGCCAAACA GGGCCTGCTGCCAG-CGGA TCTG TCCGGCCGGCAGC-GGCGC TTGGCGCCACAGCGC TERM 1179 1015263 - 1015320 + G 73 -10.8 -3.60792 | gap 3, opp_overlap 1015261, overlap 1015263 1015308 TGCTGGCGGAAACCC GGGC-C-GACGAG-CTGATGTTCAACGGT CCC ATCGTCGATCATCAGGCTCGTCTGCGCTC TTTCGAGATTGCCGC TERM 1180 1015263 - 1015318 + G 82 -14.8 -3.38314 | gap 1, opp_overlap 1015261, overlap 1015263 1015308 TGCTGGCGGAAACCC GGGCCGACGAG-CTGATGTTCAACGGT CCC ATCGTCGATCATCAGGCTCGTCTGCGC TCTTTCGAGATTGCC AHA_0938 1014368 - 1015357 + | flavin dependant oxidoreductase AHA_0939 1015593 - 1016093 + | helix-turn-helix domain-containing protein TERM 1181 1016112 - 1016144 + T 100 -22.1 -4.67982 | opp_overlap 1016117, overlap 1016117 GAGCGATGCACCATA AAAAACGGGCCCGGC AAT GCCGGGCCCGTTTTG TTTTATTGCCTGCCA TERM 1182 1016117 - 1016139 + T 100 -22 -5.27476 | opp_overlap 1016117, overlap 1016112 ATGCACCATAAAAAA CGGGCCCGGC AAT GCCGGGCCCG TTTTGTTTTATTGCC TERM 1183 1016139 - 1016117 - T 100 -22 -5.31877 | opp_overlap 1016117 1016112 ATGCACCATAAAAAA CGGGCCCGGC AAT GCCGGGCCCG TTTTGTTTTATTGCC apaH 1017080 - 1016259 - | diadenosine tetraphosphatase apaG 1017449 - 1017087 - | ApaG ksgA 1018269 - 1017454 - | dimethyladenosine transferase pdxA 1019266 - 1018271 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1184 1019149 - 1019096 - G 78 -15.1 -2.78384 | gap 1 CTGGTCGGCATCATA GGGCTGCAGCTCGA-TGGGCAGCCCC AGC AGGGCAGCCCGCTCGCGCAGCAGCGC CGGATCGGCGATCAC surA 1020564 - 1019266 - | peptidylprolyl cis-trans isomerase SurA AHA_0945 1023027 - 1020595 - | organic solvent tolerance protein TERM 1185 1022842 - 1022866 + g 71 -11.4 -3.42503 | TTCCACGGGTTGGGC GTTGGCGTCC TTGCC GGGCGCCAGC TTCTCAATCTTGGGG TERM 1186 1022987 - 1023018 + g 74 -5.8 -4.50976 | overlap 1022988 ACAAGGCTGATGGTC AGGGCGATGGGATA GGAG TATCCCAGTGTCCG TTTTGTCATGTGAAA AHA_0946 1023202 - 1024212 + | aminoglycoside phosphotransferase AHA_0947 1024209 - 1024877 + | nucleotidyltransferase family protein djlA 1024897 - 1025727 + | co-chaperone DjlA TERM 1187 1025740 - 1025786 + T 100 -15.5 -3.5511 | gap 2, opp_overlap 1025753, overlap 1025753 TGAGCGCCCCTTCGT CAGC-CATA-AAAAATGCCCGTC ACT GACGGGCATTTTTGTTTGCGCTG TGTTTGTGCGTCACG TERM 1188 1025753 - 1025771 + T 100 -14.6 -5.28942 | opp_overlap 1025753, overlap 1025740 GTCAGCCATAAAAAA TGCCCGTC ACT GACGGGCA TTTTTGTTTGCGCTG TERM 1189 1025771 - 1025753 - T 100 -14.6 -5.28176 | opp_overlap 1025753 1025740 GTCAGCCATAAAAAA TGCCCGTC ACT GACGGGCA TTTTTGTTTGCGCTG AHA_0949 1027147 - 1025804 - | xanthine/uracil permease family protein TERM 1190 1027390 - 1027373 - R 100 -9.9 -5.72622 | opp_overlap 1027373 GCCAGAAATAAAAAA GGTTCTC GCTG GAGAACC TTTTGCGTGGGCAGC TERM 1191 1027373 - 1027390 + r 83 -9.9 -4.18018 | opp_overlap 1027373 GCCAGAAATAAAAAA GGTTCTC GCTG GAGAACC TTTTGCGTGGGCAGC TERM 1192 1027824 - 1027807 - R 100 -12.7 -4.30987 | opp_overlap 1027807 ATCGGGCACAAGAAA GGGGAGC CTGG GCTCCCC TTGTGGCATGTGCCG TERM 1193 1027807 - 1027824 + r 84 -12.7 -3.34962 | opp_overlap 1027807 ATCGGGCACAAGAAA GGGGAGC CTGG GCTCCCC TTGTGGCATGTGCCG AHA_0950 1029578 - 1027911 - | putative ABC transporter ATP-binding protein TERM 1194 1028322 - 1028357 + g 70 -11.8 -3.14211 | GCTCGGGAACTCGTA GTTGCCGATGCGCAGG ATGT CCTGGCCGTCGGCGAC TTCCTCGAACACCGT TERM 1195 1028799 - 1028825 + g 73 -2.8 -4.72272 | overlap 1028811 ACGAGCCGCTTCCGT GCTGGCTTCCTG TGC CAGGCGGGCATC TTTTTGCTCCAGCCA TERM 1196 1029116 - 1029153 + g 73 -6.8 -4.30441 | gap 1 TCTGGGCATCCCAGG CCGGCAGGCGCAGGGCG TCGGC CGCGC-GCTCCAGCTGG TTTTCCATGTTGTGG TERM 1197 1029344 - 1029367 + g 70 -11.8 -3.13522 | gap 1, overlap 1029342 GCTCCGGATCCAGCT TCGGCT-CCTG CGG CAGGTAGCCGA TCTTGATGCCGGGCT TERM 1198 1029701 - 1029679 - H 80 -4.8 -5.00616 | opp_overlap 1029665 1029698, overlap 1029698 CCGGGTTCCAAAAAA CCCGTCGATT GTA AACCAATGGG CGAGGGGGGGCAAAG AHA_0951 1029819 - 1030394 + | Crp family transcriptional regulator AHA_0952 1030455 - 1030961 + | hypothetical protein TERM 1199 1031042 - 1031020 - T 100 -15.6 -4.73613 | opp_overlap 1031020 GGATTACCAAGAAAA GAAGCCGCCA CAG TGGCGGCCTC TTGGGTTCATCAGGC TERM 1200 1031020 - 1031042 + T 87 -13.4 -3.20723 | opp_overlap 1031020 GGATTACCAAGAAAA GAAGCCGCCA CAG TGGCGGCCTC TTGGGTTCATCAGGC mtnN-1 1031825 - 1031052 - | MTA/SAH nucleosidase TERM 1201 1031374 - 1031344 - G 89 -16.8 -3.41051 | overlap 1031345 CGACCGTGACGATAA CGGTCGGCCATGCC GAG GGCGCGGCCGACCA GCTCGGGATCGCCAG TERM 1202 1031373 - 1031345 - G 86 -18.1 -2.64416 | overlap 1031344 GACCGTGACGATAAC GGTCGGCCATGCC GAG GGCGCGGCCGACC AGCTCGGGATCGCCA AHA_0954 1032851 - 1031997 - | lytic transglycosylase, catalytic TERM 1203 1032841 - 1032815 - G 100 -8.8 -5.65177 | overlap 1032816 ACAGCGATAAAAAAA GCAGCAAAAACA GCC TGTTTTCGCTGG AACTCGACATGGATT TERM 1204 1032840 - 1032816 - G 83 -12.3 -3.9748 | overlap 1032815 CAGCGATAAAAAAAG CAGCAAAAACA GCC TGTTTTCGCTG GAACTCGACATGGAT AHA_0955 1033377 - 1033036 - | hypothetical protein TERM 1205 1033430 - 1033410 - R 73 -10.4 -3.39274 | overlap 1033413 AACAAGGAGAGAAGA GAAGGGCC TTGCT GGCCCCTC AGACGTCGAGGTGAT TERM 1206 1033427 - 1033413 - R 71 -8.5 -3.81548 | overlap 1033410 AAGGAGAGAAGAGAA GGGCC TTGCT GGCCC CTCAGACGTCGAGGT AHA_0956 1033617 - 1033429 - | hypothetical protein AHA_0957 1034753 - 1033815 - | HTH-type transcriptional regulator XapR xapA 1035084 - 1035911 + | purine nucleoside phosphorylase AHA_0959 1035937 - 1037196 + | nucleoside permease TERM 1207 1037216 - 1037233 + F 100 -14.1 -4.30719 | CCCATCCCTTGTTCC GGGGCGC TGCG GCGCCCC TTTCTTATCCCGACA deoC-1 1037259 - 1038062 + | deoxyribose-phosphate aldolase TERM 1208 1038043 - 1038055 + F 70 -9.1 -3.70853 | opp_overlap 1038035 GCAAGAAGCCGGTTG CTGCC GAC GGCAG TTATTGAATCATTCC TERM 1209 1038079 - 1038100 + F 85 -12.9 -3.54543 | TCATTCCCATCCAGT GCGGCGCCC GGCG GGGCGCCCC TTTGCACAGGTGCAT TERM 1210 1038796 - 1038823 + G 72 -4.1 -4.63592 | gap 1, overlap 1038775 1038797 GCTCGGCCTTGCCTA TCTG-GCGCTGT TTGCC ACGGCGCTCAGC TTCTTTTTGTTCCAG AHA_0961 1038119 - 1039030 + | hypothetical protein AHA_0962 1040049 - 1039036 - | putative nucleotide sugar epimerase TERM 1211 1039857 - 1039837 - G 76 -12.5 -3.53012 | overlap 1039840 CCGCCCCTCGGCAAA CAGGGCGGC CAT GCCGGCCTG GTCCGCCAGCTCGCC TERM 1212 1040315 - 1040300 - H 73 -10.4 -3.45832 | GAACCCCATAACGAA GCCCTG CGGA CAGGGC TCGCGCCCGCCAGAC AHA_0963 1040372 - 1040998 + | hypothetical protein TERM 1213 1041061 - 1041082 + T 100 -15.9 -3.32022 | opp_overlap 1041061 CGCCTTGCAAACAAA CAGAGCGCC TGAT GGCGCTCTG TTGCTATCTGCCGCA TERM 1214 1041082 - 1041061 - T 100 -15.9 -4.41348 | opp_overlap 1041061 CGCCTTGCAAACAAA CAGAGCGCC TGAT GGCGCTCTG TTGCTATCTGCCGCA hutD 1041892 - 1041104 - | hemin ABC transporter, ATP-binding protein HutD AHA_0965 1042935 - 1041907 - | iron chelate ABC transporter permease TERM 1215 1042590 - 1042540 - G 79 -11.1 -3.85698 | gap 1 CGCGCCGCCGAGAAA GGCGAGCAGGGGCAGCAGGCCGAT GCCG AGCAGGCT-CTGCCACTGCTGGCC GAGGGGGGCCAGCAG AHA_0966 1043774 - 1042935 - | ABC-type hemin transport system, periplasmic component TERM 1216 1043930 - 1043912 - H 80 -12.4 -3.34902 | overlap 1043910 CGCCATGACAGAACA GGGATGCC GCA GGCACCCC AAGGGAGAACCGATG AHA_0967 1043943 - 1044455 + | HuvX protein TERM 1217 1045025 - 1044970 - g 72 -11.8 -3.29461 | gap 2, opp_overlap 1044989, overlap 1044958 1044971 CAAGCGCGTCGACAA CGGCG--CCGAGCTGACCAGCCCGGC CGATGC GCCGGTCTGATCCGCGCGGATCGCCA GAATGACAAAACGGG AHA_0968 1044452 - 1045009 + | HutZ protein TERM 1218 1045063 - 1045032 - T 91 -17.4 -2.83271 | opp_overlap 1045037, overlap 1045037 GGATCGCCAGAATGA CAAAACGGGCAGCC CTGG GGCTGCCCGTTTTT TATGGACGGTTTTCC TERM 1219 1045058 - 1045037 - T 100 -17.3 -4.58466 | opp_overlap 1045037, overlap 1045032 GCCAGAATGACAAAA CGGGCAGCC CTGG GGCTGCCCG TTTTTTATGGACGGT TERM 1220 1045037 - 1045058 + T 100 -17.3 -5.24531 | opp_overlap 1045037 1045032 GCCAGAATGACAAAA CGGGCAGCC CTGG GGCTGCCCG TTTTTTATGGACGGT AHA_0969 1045484 - 1045080 - | putative lipoprotein AHA_0970 1046075 - 1045524 - | isochorismatase family protein TERM 1221 1045788 - 1045749 - G 72 -7.2 -4.18018 | overlap 1045772 GGTGTCGACGCAAAA GTCGGTGGCACA-GCCGC AGATGA GCAGCCTGT-CCACCGCC TGCTCCGCCAAGAGG AHA_0971 1047104 - 1046136 - | hypothetical protein hgpB 1047293 - 1049386 + | putative outer-membrane heme receptor TERM 1222 1049433 - 1049395 - f 75 -12.5 -2.56596 | gap 1, opp_overlap 1049406, overlap 1049406 GTTCTGATGAATGCA CACCACGACAA-GGGGCC TGCG GGCCCCTTTTTCATGGCG GGGACCGGGCCCCCG TERM 1223 1049421 - 1049406 - f 80 -11.8 -3.45849 | opp_overlap 1049406, overlap 1049395 TGCACACCACGACAA GGGGCC TGCG GGCCCC TTTTTCATGGCGGGG TERM 1224 1049406 - 1049421 + F 100 -11.8 -4.72272 | opp_overlap 1049406 1049395 TGCACACCACGACAA GGGGCC TGCG GGCCCC TTTTTCATGGCGGGG TERM 1225 1049493 - 1049479 - f 100 -12.8 -4.85782 | GCGGCCAAAAAGAAA CCCGCC GAA GGCGGG TGGAAGGATTGCAAC hcaT 1049675 - 1050814 + | major facilitator superfamily transporter phenyl propionate permease (PPP) family protein TERM 1226 1050859 - 1050876 + T 86 -12.7 -3.69395 | opp_overlap 1050859 ATCAGCAACGAAAAA GGGGAGC CTCG GCTCCCC TTGTTGCATGGTGAC TERM 1227 1050876 - 1050859 - T 100 -12.7 -4.90869 | opp_overlap 1050859 ATCAGCAACGAAAAA GGGGAGC CTCG GCTCCCC TTGTTGCATGGTGAC AHA_0974 1051108 - 1050899 - | hypothetical protein TERM 1228 1050988 - 1050998 + g 74 -4.6 -4.59773 | opp_overlap 1050982, overlap 1050984 AGAAGCGAACCGCCT TGGC ATG GCCG TTTTTCAGGATGGAG AHA_0975 1051727 - 1051116 - | hypothetical protein TERM 1229 1051406 - 1051392 - G 70 -10 -3.56643 | overlap 1051395 CCGATAGCCGCGAAA CAGCTG GAG CAGCTG CCACAGCATCAGCAT AHA_0976 1051947 - 1055447 + | proline sensor PrlS TERM 1230 1055473 - 1055498 + F 83 -6.2 -4.86902 | CCAGCCAGCAAGATC GGCACTTTCT GACACA AAAAAGTGCC TTTTCTTCTCGTTTG AHA_0977 1055820 - 1058429 + | chitinase A TERM 1231 1058448 - 1058470 + F 100 -13.4 -5.03314 | opp_overlap 1058447 1058444, overlap 1058449 CACCGTCAAACCCAT CGGGGCATGC CAG GCATGCCCCC TTTTTTCCCCATAAC TERM 1232 1058449 - 1058469 + F 100 -16.9 -3.61506 | opp_overlap 1058447 1058444, overlap 1058448 ACCGTCAAACCCATC GGGGCATGC CAG GCATGCCCC CTTTTTTCCCCATAA TERM 1233 1058758 - 1058731 - gf 81 -12.6 -3.01712 | CCGCCCTGCGCAAGA GCCTGCTGCTGG TGCG CCCGCTGCAGGC CGGCAACCAGGCGCC AHA_0978 1058502 - 1060880 + | putative metalloprotease TERM 1234 1060864 - 1060883 + GT 78 -2.8 -5.06735 | gap 1 CGGTCAATGGCATGC CGCT-GGCG GCG CGCTGAGTG TTTTTCTCCTTTCTC TERM 1235 1060922 - 1060941 + GT 83 -12.1 -3.72576 | ATGCGAGGTGCCACT GGCGGGG GCCAAG CCCCGCC TTTCATCAAGCAAGA AHA_0979 1060787 - 1062886 + | basic endochitinase TERM 1236 1062923 - 1062910 - T 100 -9.5 -5.4505 | opp_overlap 1062910 CCGCGCAATAAAAAA GGCCC GTCA GGGCC TTTTTCATGGGGTGA TERM 1237 1062910 - 1062923 + T 95 -9.5 -4.7373 | opp_overlap 1062910 CCGCGCAATAAAAAA GGCCC GTCA GGGCC TTTTTCATGGGGTGA AHA_0980 1063745 - 1062945 - | ribosomal RNA large subunit methyltransferase A, putative TERM 1238 1063828 - 1063813 - R 93 -10.4 -4.49981 | opp_overlap 1063813 GAGACGATCAGAAAA GGCTGC CGTG GCAGCC TTTTTTATCCGGCGA TERM 1239 1063813 - 1063828 + r 100 -10.4 -5.24129 | opp_overlap 1063813 GAGACGATCAGAAAA GGCTGC CGTG GCAGCC TTTTTTATCCGGCGA crp 1064509 - 1063871 - | cAMP-regulatory protein TERM 1240 1064245 - 1064264 + g 71 -5.6 -4.24948 | gap 1 AACCTTTGGCACGCA CCCAG-GCG GAA CGCTCCGGG TTTTCGCTCTCCTCG AHA_0982 1064626 - 1065225 + | chain A, structural Genomics AHA_0983 1065275 - 1065571 + | hypothetical protein TERM 1241 1065592 - 1065612 + T 100 -14 -4.28254 | opp_overlap 1065592 ATGGTGTGATGACAA CGGCCTGC TCAAT GCAGGCCG TTTTGCATATTGGGG TERM 1242 1065612 - 1065592 - T 95 -14 -3.40522 | opp_overlap 1065592 ATGGTGTGATGACAA CGGCCTGC TCAAT GCAGGCCG TTTTGCATATTGGGG AHA_0984 1066159 - 1065629 - | putative lipoprotein AHA_0985 1067044 - 1066175 - | phosphoribulokinase, plasmid TERM 1243 1067197 - 1067180 - R 100 -12.7 -5.1287 | CGCAGACGCAAAAAA GGGCTGC GGTG GCAGCCC TTGCGACAAGCAAAG AHA_0986 1067663 - 1067220 - | hypothetical protein AHA_0987 1068004 - 1067660 - | hypothetical protein arnT 1069647 - 1068004 - | 4-amino-4-deoxy-L-arabinose transferase AHA_0989 1070616 - 1069717 - | polysaccharide deacetylase family protein AHA_0990 1072600 - 1070609 - | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase AHA_0991 1073577 - 1072597 - | undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase AHA_0992 1074720 - 1073584 - | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase TERM 1244 1075324 - 1075297 - g 81 -13.4 -3.63991 | CATCATCGTCAACAA GTCGACCGTGCC GGTG GGCACCGCCGAC AAGGTGACCGCCAGG AHA_0993 1074941 - 1076287 + | UDP-glucose dehydrogenase TERM 1245 1076608 - 1076583 - T 100 -16.9 -5.18726 | opp_overlap 1076583 TGCTCACAATAAAAA TGGCCCTCCGC CAGT GCGGAAGGCCA TTTTTATTTTCTGAA TERM 1246 1076583 - 1076608 + T 100 -14.7 -5.54907 | opp_overlap 1076583 TGCTCACAATAAAAA TGGCCCTCCGC CAGT GCGGAAGGCCA TTTTTATTTTCTGAA AHA_0994 1076959 - 1076717 - | enolase AHA_0996 1077049 - 1078203 + | GGDEF family protein AHA_0995 1079267 - 1078185 - | alpha/beta hydrolase TERM 1247 1079234 - 1079200 - GT 100 -15 -4.39426 | overlap 1079202 1079205 GACAGGGGCAGAAAA GGCAACGGCGAGAAGC CGG GCTTCTCGCCGTCGGG ATCAGGCTGGCAGGC TERM 1248 1079232 - 1079202 - GT 100 -22 -2.53422 | overlap 1079200 1079205 CAGGGGCAGAAAAGG CAACGGCGAGAAGC CGG GCTTCTCGCCGTCG GGATCAGGCTGGCAG TERM 1249 1079229 - 1079205 - GT 100 -20.1 -3.41587 | overlap 1079202 1079200 GGGCAGAAAAGGCAA CGGCGAGAAGC CGG GCTTCTCGCCG TCGGGATCAGGCTGG AHA_0997 1080135 - 1079236 - | chemotaxis protein CheV AHA_0998 1080865 - 1080317 - | hypothetical protein AHA_0999 1081043 - 1081249 + | hypothetical protein slyD 1081396 - 1082034 + | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD TERM 1250 1082061 - 1082077 + T 100 -15.1 -5.64274 | opp_overlap 1082061 CCGATGATAAAAAAA CCCGCGC CTG GCGCGGG TTTTTTTATGGCTGG TERM 1251 1082077 - 1082061 - T 100 -15.1 -5.67063 | opp_overlap 1082061 CCGATGATAAAAAAA CCCGCGC CTG GCGCGGG TTTTTTTATGGCTGG AHA_1001 1082314 - 1082099 - | hypothetical protein AHA_1002 1083297 - 1082329 - | vegetatible incompatibility protein HET-E-1 fkpA 1083417 - 1084223 + | FKBP-type peptidyl-prolyl cis-trans isomerase FkpA TERM 1252 1084236 - 1084267 + F 100 -16 -3.35679 | opp_overlap 1084243, overlap 1084243 TAAGCGGAAAACGTT GAAAAAACGGCTCC TTAG GGAGCCGTTTTTAC TTGTAACTCCGCCCG TERM 1253 1084243 - 1084260 + F 100 -12.7 -4.93968 | opp_overlap 1084243, overlap 1084236 AAAACGTTGAAAAAA CGGCTCC TTAG GGAGCCG TTTTTACTTGTAACT TERM 1254 1084260 - 1084243 - f 100 -12.7 -5.08011 | opp_overlap 1084236 1084243 AAAACGTTGAAAAAA CGGCTCC TTAG GGAGCCG TTTTTACTTGTAACT TERM 1255 1085062 - 1085097 + G 71 -8.8 -3.86015 | overlap 1085064 GCGCAGGGGGATCGC AAGGGGGCGGCCAGCC TGGC GGATGGCGGCACCCTG TTTCTGGACGAGATC TERM 1256 1085064 - 1085095 + G 71 -11.4 -3.51934 | overlap 1085062 GCAGGGGGATCGCAA GGGGGCGGCCAGCC TGGC GGATGGCGGCACCC TGTTTCTGGACGAGA TERM 1257 1085212 - 1085264 + G 78 -10.3 -4.08394 | opp_overlap 1085232 GAGACGGTGGACGTG CGCTTCGTCTGCGCCACCAACCGCG ATC CCCTGCTGGAGGTGAAGGCGGGGCG TTTTCGCGAGGATCT AHA_1004 1084375 - 1085781 + | sigma-54 factor interaction domain-containing protein TERM 1258 1085852 - 1085821 - T 100 -17.2 -3.85698 | opp_overlap 1085821 1085822, overlap 1085822 CTCCCGGGGGATAAA TGTGCGGGGCGGCC GATT GGCCGCCCCGCAGC GTTTGTGGCGGTCGC TERM 1259 1085821 - 1085853 + T 100 -19.2 -3.87994 | gap 1, opp_overlap 1085821 1085822, overlap 1085822 CTCCCGGGGGATAAA TG-TGCGGGGCGGCC GATT GGCCGCCCCGCAGCG TTTGTGGCGGTCGCT TERM 1260 1085851 - 1085822 - T 100 -20.7 -2.91276 | opp_overlap 1085821 1085822, overlap 1085821 TCCCGGGGGATAAAT GTGCGGGGCGGCC GATT GGCCGCCCCGCAG CGTTTGTGGCGGTCG TERM 1261 1085822 - 1085852 + T 100 -20.5 -2.92475 | gap 1, opp_overlap 1085822 1085821, overlap 1085821 TCCCGGGGGATAAAT G-TGCGGGGCGGCC GATT GGCCGCCCCGCAGC GTTTGTGGCGGTCGC AHA_1005 1086740 - 1085871 - | TPR repeat-containing protein AHA_1006 1087189 - 1086854 - | hypothetical protein TERM 1262 1087095 - 1087079 - G 71 -5.7 -4.30719 | overlap 1087080 1087082 GGCCGGCAGAATAAA CCAGCGG GCG CTGCCGG CCGCAACGGCGCGCA AHA_1007 1087657 - 1087316 - | hypothetical protein TERM 1263 1087721 - 1087704 - R 100 -14.1 -4.86001 | opp_overlap 1087694 AGTATGCCATAAAAA CGGCGCC CTCA GGCGCCG TTGCAACAGCTTGTG AHA_1008 1089582 - 1087744 - | 5'-nucleotidase/2',3'-cyclic phosphodiesterase TERM 1264 1088528 - 1088544 + g 100 -13.7 -4.44667 | ACGTTGGTCTGCTCG GTGCCGC TGA GCGGCAC TTTCTTCTTGGCCAC TERM 1265 1088900 - 1088933 + g 73 -6.7 -4.38154 | overlap 1088902 GTGACCATGATGATC TTGTTGGCACCCTTG GATT TGAGGGTGTCGACCA TTTTCTGGGCGGTCT TERM 1266 1089411 - 1089430 + g 72 -7.8 -4.1899 | opp_overlap 1089399 ACAGCTCCTGGCCGG TGGGCTGG ATCG CCAGCGCA TTTTCGGTCGGGTCG AHA_1009 1091356 - 1089815 - | EAL domain-containing protein TERM 1267 1090342 - 1090322 - G 74 -10.4 -3.76839 | gap 1, overlap 1090323 GAAGCTGAAGTGAAA GCGG-GGCG GCAG CGCCGCCGC ATGGGGGGCGAACTG TERM 1268 1091511 - 1091484 - R 100 -12 -4.70879 | opp_overlap 1091485 1091489, overlap 1091485 TGGAAATGCCAAAAA GCAAAGACGGCC CGCA GGCCGCCTTTGT TTGTCATCGCAGGAA TERM 1269 1091485 - 1091510 + r 100 -13.3 -3.96148 | opp_overlap 1091484 1091485, overlap 1091489 GGAAATGCCAAAAAG CAAAGACGGCC CGCA GGCCGCCTTTG TTTGTCATCGCAGGA TERM 1270 1091510 - 1091485 - R 100 -15.5 -3.41804 | opp_overlap 1091485 1091489, overlap 1091484 GGAAATGCCAAAAAG CAAAGACGGCC CGCA GGCCGCCTTTG TTTGTCATCGCAGGA TERM 1271 1091489 - 1091506 + r 87 -8.3 -4.59342 | opp_overlap 1091485 1091484, overlap 1091485 ATGCCAAAAAGCAAA GACGGCC CGCA GGCCGCC TTTGTTTGTCATCGC AHA_1010 1092389 - 1091535 - | import inner membrane translocase, subunit Tim44 TERM 1272 1092444 - 1092479 + H 72 -11.2 -3.06261 | gap 1, overlap 1092447 CTGCTTTGGCAAGCT CAGCGAGGCGCATGGCA GGC TGCC-TGTCCCTCGTTG TATTGCAGCTTGCGA TERM 1273 1092447 - 1092476 + H 70 -9.3 -3.67498 | gap 1, overlap 1092444 CTTTGGCAAGCTCAG CGAGGCGCATGGCA GGC TGCC-TGTCCCTCG TTGTATTGCAGCTTG AHA_1011 1092570 - 1092671 + | hypothetical protein dnaB 1092822 - 1094216 + | replicative DNA helicase AHA_1013 1094283 - 1094375 + | hypothetical protein AHA_1014 1094442 - 1094534 + | hypothetical protein TERM 1274 1094557 - 1094540 - f 75 -12.7 -2.64695 | overlap 1094539 TGACTACTAAGTAAG CCGGGAG CCTG CTCCCGG TATCCAGAAACAGTT alr-1 1094685 - 1095758 + | alanine racemase TERM 1275 1095785 - 1095800 + T 100 -11.8 -5.70829 | opp_overlap 1095785 GCCAAACGTCAAAAA GCCCCG TATG CGGGGC TTTTTTTATGATGTT TERM 1276 1095800 - 1095785 - T 100 -11.8 -4.70879 | opp_overlap 1095785 GCCAAACGTCAAAAA GCCCCG TATG CGGGGC TTTTTTTATGATGTT AHA_1016 1096120 - 1095872 - | putative ferredoxin yegQ 1097483 - 1096122 - | U32 family peptidase TERM 1277 1097724 - 1097708 - R 73 -5.1 -4.56597 | GTCGGCGGCCAAAAA TGGGC GGTTCAG GCCCA GCGAGAGAGGGGGGA AHA_1018 1098453 - 1097716 - | EAL domain-containing protein TERM 1278 1097771 - 1097792 + g 71 -9.5 -3.76775 | gap 1 TAGCCTTGCTGATAG TCGC-AACCG AGC CGGTTGGCGA TTTCGATGTGTTGCA TERM 1279 1099310 - 1099296 - g 78 -6.4 -4.67353 | TGATGGACGGAAAAA GAACTG TTC CAGTCC AACCAAAATTCATCT AHA_1019 1098706 - 1099428 + | hypothetical protein AHA_1020 1099458 - 1099937 + | adhesin major subunit pilin TERM 1280 1099963 - 1099983 + F 100 -14.7 -4.1399 | opp_overlap 1099950 AAGCCTTCCTTTCAA GGCTCCCTG CGA CAGGGGGCC TTTCTGTCTGCATCG AHA_1021 1100017 - 1102452 + | hypothetical protein AHA_1022 1102472 - 1103629 + | hypothetical protein TERM 1281 1103651 - 1103665 + T 95 -5.7 -5.28942 | opp_overlap 1103651, overlap 1103645 TGATATTGGTAAAAA GGGTT AAACC AACCC TTTTTCTTTGGCATA TERM 1282 1103665 - 1103651 - T 75 -6.4 -4.61231 | opp_overlap 1103651 1103645 TGATATTGGTAAAAA GGGTTA AAC CAACCC TTTTTCTTTGGCATA AHA_1023 1104292 - 1103654 - | LuxR family DNA-binding response regulator TERM 1283 1105254 - 1105264 + G 73 -3.2 -4.72497 | overlap 1105247 TCCCGTCTGCCTCCC CTCA GGC TGGG TTTTATTCCTGGGTG TERM 1284 1107167 - 1107177 + G 73 -6.8 -4.25104 | CGTCGAGGATCACCA CCTG AAT CAGG TTTTGGTGCAGCGCC AHA_1025 1104414 - 1107842 + | response regulator/sensor histidine kinase TERM 1285 1108224 - 1108196 - f 84 -13.2 -3.09028 | opp_overlap 1108197 1108202, overlap 1108202 TAGAAGTGTGAAAAG CGAAAACCCGGC ACTGG GCCGGGTTTTCT TGAATGATGGTGGAG TERM 1286 1108197 - 1108223 + F 100 -16.7 -3.10715 | opp_overlap 1108196 1108202, overlap 1108202 AGAAGTGTGAAAAGC GAAAACCCGGC ACTGG GCCGGGTTTTC TTGAATGATGGTGGA TERM 1287 1108218 - 1108202 - f 93 -10.8 -4.4267 | opp_overlap 1108197 1108202, overlap 1108196 TGTGAAAAGCGAAAA CCCGGC ACTGG GCCGGG TTTTCTTGAATGATG TERM 1288 1108202 - 1108218 + F 100 -10.8 -4.69053 | opp_overlap 1108202 1108196, overlap 1108197 TGTGAAAAGCGAAAA CCCGGC ACTGG GCCGGG TTTTCTTGAATGATG TERM 1289 1109047 - 1109057 + G 74 -2.4 -4.82901 | ACTTCAACGCCAATC TGGG GGG CCCC TTTTTCTCGGCCAGG TERM 1290 1109930 - 1109948 + G 83 -8 -4.56775 | opp_overlap 1109921, overlap 1109932 GTCAAACCGCTATAC CCCGGCCG AAA TGGCCGAG TTTTTGGGGCAGCAT AHA_1029 1108869 - 1110116 + | cysteine desulfurase family protein TERM 1291 1110119 - 1110149 + T 71 -8.2 -3.91196 | opp_overlap 1110124, overlap 1110124 1110126 TATGCCGCATTGAGA TAAAACAGCCCGGT TAT GCCGGGCTGTGTCG TTTCATATCTCTGCC TERM 1292 1110124 - 1110144 + T 91 -14.7 -3.05561 | opp_overlap 1110124, overlap 1110119 1110126 CGCATTGAGATAAAA CAGCCCGGT TAT GCCGGGCTG TGTCGTTTCATATCT TERM 1293 1110144 - 1110124 - T 100 -14 -4.55287 | opp_overlap 1110124 1110119 1110126 CGCATTGAGATAAAA CAGCCCGG TTATG CCGGGCTG TGTCGTTTCATATCT TERM 1294 1110126 - 1110142 + T 72 -11.5 -3.07629 | opp_overlap 1110124, overlap 1110124 1110119 CATTGAGATAAAACA GCCCGGT TAT GCCGGGC TGTGTCGTTTCATAT cheB-1 1111231 - 1110170 - | chemotaxis-specific methylesterase AHA_1031 1111712 - 1111242 - | chemoreceptor glutamine deamidase CheD cheR-1 1112526 - 1111723 - | CheR methyltransferase SAM binding domain-containing protein AHA_1033 1114751 - 1112583 - | methyl-accepting chemotaxis protein cheW-1 1115394 - 1114822 - | chemotaxis protein CheW TERM 1295 1115454 - 1115423 - R 73 -5 -4.56887 | gap 1, opp_overlap 1115424, overlap 1115424 TAAAAACGGACAAAA TCGGCCTCGTCAACC TGA GGTTG-CGCTGCCGT ATTGCCGTGCAGTGG AHA_1035 1117329 - 1115407 - | methyl-accepting chemotaxis protein TERM 1296 1115620 - 1115647 + g 85 -9.8 -4.31379 | overlap 1115621 CATCTCTTCGGCCGT GGCCGCCAGC TCCTCGCT GCTGGCGGCA TTTTGCTGGGTTACT TERM 1297 1115621 - 1115646 + g 73 -13.3 -3.18105 | overlap 1115620 ATCTCTTCGGCCGTG GCCGCCAGC TCCTCGCT GCTGGCGGC ATTTTGCTGGGTTAC TERM 1298 1115926 - 1115944 + g 71 -13.1 -3.05384 | GTGTTCACCGGCCCG CGCCGCC TCGAT GGCGGCG TTGAGTGCCAGCAGA cheA-1 1119558 - 1117345 - | chemotaxis protein CheA TERM 1299 1117811 - 1117799 - G 81 -7.7 -4.4648 | ACGCGCACCAGAAAA CCATC GAT GATGG CCAGAGTGAGCGGCA rsbV 1119911 - 1119585 - | anti-sigma-B factor antagonist AHA_1038 1120294 - 1119926 - | chemotaxis protein CheY AHA_1039 1121518 - 1120304 - | methyl-accepting chemotaxis protein, putative TERM 1300 1121049 - 1121077 + g 79 -10.9 -3.85698 | AGCTGGGCCTGGCTC TCGGCCAGCACGG CGG TCATGCCGGCCGA TTTCTCGCCGCCCAG TERM 1301 1121782 - 1121801 + r 87 -13.6 -3.26545 | opp_overlap 1121782 AGGAGGCAATGAAAA GAGCCTGC ATTG GCAGGCTC TTGGTGCTGTATGCG TERM 1302 1121801 - 1121782 - R 100 -13.6 -4.43879 | opp_overlap 1121782 AGGAGGCAATGAAAA GAGCCTGC ATTG GCAGGCTC TTGGTGCTGTATGCG AHA_1040 1122910 - 1121822 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 1303 1123073 - 1123087 + H 71 -10 -3.55761 | opp_overlap 1123063 1123058 CCACAGGGCTTGGCT GCCCTA AGA TAGGGC TTTCGCCACTGGATG AHA_1041 1123113 - 1124054 + | LysR family transcriptional regulator TERM 1304 1124074 - 1124094 + F 76 -10.5 -3.66556 | overlap 1124083 AGACGCTTGTGTTGG TCTATAGCC GTT GGCTATGGA TTCTATTCCCAACTT AHA_1042 1124090 - 1124791 + | amino acid transporter LysE AHA_1043 1124894 - 1126753 + | U32 family peptidase TERM 1305 1127442 - 1127409 - g 71 -8.1 -3.96148 | gap 1, opp_overlap 1127412 1127413, overlap 1127411 1127413 CCCCTCGATGAGAAA CAGA-CCCGGCACCTG TTG CAGGCGGCGGGCTTTG GCGTTGGTCGGCGCT TERM 1306 1127438 - 1127411 - g 70 -9.8 -3.57406 | gap 1, opp_overlap 1127412 1127413, overlap 1127409 1127413 CCTCGATGAGAAACA GACCCGGCACCTG TTG CAGGCGGCGGG-C TTTGGCGTTGGTCGG TERM 1307 1127437 - 1127413 - g 77 -13.5 -3.36228 | opp_overlap 1127413 1127412, overlap 1127411 1127409 TCGATGAGAAACAGA CCCGGCACCTG TTG CAGGCGGCGGG CTTTGGCGTTGGTCG AHA_1044 1126842 - 1127504 + | hypothetical protein AHA_1045 1127996 - 1127520 - | methylated-DNA--protein-cysteine methyltransferase AHA_1046 1129558 - 1127993 - | helix-turn-helix, AraC type:HhH-GPD:Ada, metal-binding:AlkA, N-terminal TERM 1308 1129693 - 1129670 - H 72 -2.2 -4.94058 | overlap 1129671 1129674 GCAATTGAAATAAAA CCGAGGCCGC GCCC GCGACTGCAG GGTATGAAAAACAGA AHA_1047 1129768 - 1130169 + | hypothetical protein TERM 1309 1130192 - 1130209 + T 100 -14.1 -4.41114 | opp_overlap 1130192 CGTTGCCATGAAAAA CGGGGCC GCGA GGCCCCG TTTGTTATCTGCTGG TERM 1310 1130209 - 1130192 - T 100 -14.1 -4.72272 | opp_overlap 1130192 CGTTGCCATGAAAAA CGGGGCC GCGA GGCCCCG TTTGTTATCTGCTGG AHA_1048 1131813 - 1130239 - | thermostable carboxypeptidase 1 AHA_1049 1132432 - 1131851 - | Smr domain-containing protein TERM 1311 1132549 - 1132585 + r 70 -9.3 -3.65603 | overlap 1132583 CAAAGGGGAGGCGAG GGCGGGATCAGGCGATC AGG GATCGCCTGACGCAGGC TTATTGGCCCTCTTT AHA_1050 1132771 - 1132586 - | hypothetical protein TERM 1312 1132903 - 1132869 - R 83 -12.7 -3.25823 | opp_overlap 1132869 1132890 GCCCTCCCATATCAA GACCCTGACGGGGCC GATGT GGCCCCGCCTGCGCC TTATTGGCGGGCCTG TERM 1313 1132869 - 1132903 + r 70 -9 -3.61715 | opp_overlap 1132869, overlap 1132890 GCCCTCCCATATCAA GACCCTGACGGGGCCG ATG TGGCCCCGCCTGCGCC TTATTGGCGGGCCTG AHA_1051 1133797 - 1132904 - | GumN protein TERM 1314 1134299 - 1134327 + r 76 -9.5 -3.81146 | opp_overlap 1134304, overlap 1134300 1134302 TTGGTGGGGATGAGA CGAGAGGCGACGA CGC TCGTCGTCACTCC TTGTTCCTTGCAGCA TERM 1315 1134300 - 1134326 + r 79 -13 -2.88366 | opp_overlap 1134304, overlap 1134299 1134302 TGGTGGGGATGAGAC GAGAGGCGACGA CGC TCGTCGTCACTC CTTGTTCCTTGCAGC AHA_1052 1135212 - 1134385 - | short-chain dehydrogenase/reductase TERM 1316 1135286 - 1135313 + r 85 -15.6 -2.52543 | opp_overlap 1135286 1135291, overlap 1135291 GCTGATCAGAAAAAA GAAAACCGGGCC AATC GGCCCGGTTTGC TAACTTCAACCACCT TERM 1317 1135313 - 1135286 - R 100 -15.6 -5.31275 | opp_overlap 1135286 1135291, overlap 1135291 GCTGATCAGAAAAAA GAAAACCGGGCC AATC GGCCCGGTTTGC TAACTTCAACCACCT TERM 1318 1135291 - 1135308 + r 100 -14.1 -3.794 | opp_overlap 1135286 1135291, overlap 1135286 TCAGAAAAAAGAAAA CCGGGCC AATC GGCCCGG TTTGCTAACTTCAAC TERM 1319 1135308 - 1135291 - R 100 -14.1 -5.49579 | opp_overlap 1135291 1135286, overlap 1135286 TCAGAAAAAAGAAAA CCGGGCC AATC GGCCCGG TTTGCTAACTTCAAC AHA_1053 1136776 - 1135331 - | putative outermembrane porin TERM 1320 1137249 - 1137230 - R 100 -10.7 -4.74406 | ACAAAAAAAGATAAA CCCCTGC GCGATG GCAGGGG CCGGGTAGGGGGCGC AHA_1054 1139220 - 1137283 - | methyl-accepting chemotaxis protein TERM 1321 1138588 - 1138626 + g 100 -14.6 -4.57569 | gap 1, opp_overlap 1138590 GGGGGGCACCTCGAA CAGGCCGAGCGG-CGGC AGGGCC GCCAACTGCTCGGCCTG TTTTTGCAGGGCTGC TERM 1322 1139287 - 1139333 + r 81 -14.4 -2.53263 | opp_overlap 1139299 AGCAGCAGAGATGGC GCTTTTATGACAGTCAGCCCGG CGG CCGGACTGACTGTCGAGGGGGC TGGCTTACGGCTGCG TERM 1323 1139321 - 1139299 - R 86 -15.6 -2.78384 | opp_overlap 1139287 GGCGCTTTTATGACA GTCAGCCCGG CGG CCGGACTGAC TGTCGAGGGGGCTGG AHA_1055 1140234 - 1139338 - | hypothetical protein TERM 1324 1140161 - 1140103 - G 82 -5.8 -4.83615 | gap 1 CATCCCGCAGAAAAA CAGCACCAGCCCCACCAG-CACCAGCG GCGACA CGCTGGTGACCCGGGAGGTGAGCGCCG CCAGCGAGGCCCACA TERM 1325 1140294 - 1140266 - R 100 -21.1 -4.80178 | opp_overlap 1140292, overlap 1140285 GATGAATGAACAAAA GGAGGGCCAGTCT AGC AGACCGGCCCTCC CTGATGGCCATACCT AHA_1056 1141831 - 1140329 - | GntP TERM 1326 1141358 - 1141319 - G 81 -13.4 -3.60296 | opp_overlap 1141319, overlap 1141322 GATGTCCACCCCAAA CAGGCCGGCCACACCGAG CGGG CCCGGGGTGGGCGGCACG GTATGGTGAGTCACC TERM 1327 1141355 - 1141322 - G 77 -15.9 -2.62613 | opp_overlap 1141319, overlap 1141319 GTCCACCCCAAACAG GCCGGCCACACCGAG CGGG CCCGGGGTGGGCGGC ACGGTATGGTGAGTC AHA_1057 1142772 - 1141828 - | NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase AHA_1058 1143581 - 1142808 - | AP endonuclease AHA_1059 1144210 - 1143578 - | putative aldolase TERM 1328 1143974 - 1143991 + g 71 -11.3 -3.53224 | opp_overlap 1143970 GTTGTGATAGATGGC GAGGTGG AAGG CCACCTC TTTGGAGGGGCGATC AHA_1060 1145453 - 1144203 - | YgbK domain-containing protein AHA_1061 1146358 - 1145450 - | 6-phosphogluconate dehydrogenase AHA_1062 1146614 - 1147405 + | DeoR family transcriptional regulator TERM 1329 1147520 - 1147492 - T 100 -19 -3.30474 | GCCTAGAACGAGCAA GGGGTTGGCATC GTGAT GATGCCAACCCC GGGATTCGGCAGACA TERM 1330 1147606 - 1147632 + T 75 -13 -2.52015 | opp_overlap 1147602, overlap 1147605 CGTCTGATGAAGGTG GCTGGGTTGCTT CCC AAGCTGCCCAGC GTTCATCGCTATCAG AHA_1063 1150480 - 1147784 - | hypothetical protein TERM 1331 1148476 - 1148465 - G 74 -5.8 -4.40804 | CAGCACGGTAGAAAA GACG ATCT CGTC GCACTCGCGCCCCTG TERM 1332 1149748 - 1149698 - G 70 -10 -3.61715 | gap 3, opp_overlap 1149698 1149699 CAGGTTGGCGAAGAA GGCCTCGCGGTTATCCTTGTTGCCA AGCT TGGCAACAAGG-TAGCC-C-AGACC GCATTTCTCCAGCTT TERM 1333 1152628 - 1152640 + G 76 -7.7 -4.3739 | GCGTGATTATCTCAA GTTGG GCG CCAAC TTTTATACCCCACTG AHA_1064 1151726 - 1154476 + | invasin family protein AHA_1065 1154664 - 1155332 + | hypothetical protein AHA_1066 1155644 - 1157251 + | intimin/invasin family protein TERM 1334 1157332 - 1157295 - f 95 -14.3 -3.4052 | opp_overlap 1157292 1157291, overlap 1157296 GTTGAATGCAACTAA CCGGTGATAGTGGTGAT AGTG ATCACCACTATCACCTT CAAATTTGTGCTGTA TERM 1335 1157331 - 1157296 - f 95 -17.8 -2.63991 | opp_overlap 1157292 1157291, overlap 1157295 TTGAATGCAACTAAC CGGTGATAGTGGTGAT AGTG ATCACCACTATCACCT TCAAATTTGTGCTGT AHA_1067 1157771 - 1158517 + | hypothetical protein TERM 1336 1159202 - 1159212 + G 75 -4 -4.7908 | CATTTGCATTAATCT TGAT GGC ATCA TTTATTTGTCTTTTT TERM 1337 1159404 - 1159388 - g 75 -3.7 -4.67607 | TGCGGAAGAAAGAAA CACATAT TAT ACATGCG CTGCAGAAAACGGTA AHA_1068 1158514 - 1160730 + | sensory box/GGDEF family protein AHA_1069 1161820 - 1161152 - | transcriptional regulator TERM 1338 1162470 - 1162486 + H 73 -5.3 -4.56775 | ATTGTATCGTCATTG TAAATTA AAA TAATTTA TTTTTGAGAGCAAAT TERM 1339 1162666 - 1162656 - H 86 -4 -5.30189 | GAGAAGATGAAAAAA CAAT GAA ATTG CCATGTCAATAGAGT AHA_1070 1162913 - 1163206 + | transcriptional activator protein AHA_1071 1163766 - 1163620 - | hypothetical protein TERM 1340 1164098 - 1164056 - R 100 -14.2 -4.56597 | opp_overlap 1164060, overlap 1164059 1164060 1164063 GGGCGGGGCCAAAAA CGAGCAAGGGGTTGGCACCA TGA TGATGCCAACCCCTTGTTTT GTATGGCGTTCCCGA TERM 1341 1164095 - 1164059 - R 100 -20.3 -3.23708 | opp_overlap 1164060, overlap 1164056 1164060 1164063 CGGGGCCAAAAACGA GCAAGGGGTTGGCACCA TGA TGATGCCAACCCCTTGT TTTGTATGGCGTTCC TERM 1342 1164060 - 1164094 + r 100 -21.6 -4.55118 | opp_overlap 1164059 1164056 1164060 1164063 GGGGCCAAAAACGAG CAAGGGGTTGGCACCA TGA TGATGCCAACCCCTTG TTTTGTATGGCGTTC TERM 1343 1164094 - 1164060 - R 100 -23.8 -2.53903 | opp_overlap 1164060, overlap 1164059 1164056 1164063 GGGGCCAAAAACGAG CAAGGGGTTGGCACCA TGA TGATGCCAACCCCTTG TTTTGTATGGCGTTC TERM 1344 1164091 - 1164063 - R 100 -19.7 -3.4158 | opp_overlap 1164060, overlap 1164060 1164059 1164056 GCCAAAAACGAGCAA GGGGTTGGCACCA TGA TGATGCCAACCCC TTGTTTTGTATGGCG AHA_1072 1165459 - 1164200 - | protein UmuC AHA_1073 1165883 - 1165440 - | protein UmuD AHA_1074 1166357 - 1168504 + | hypothetical protein TERM 1345 1168626 - 1168637 + GF 85 -5.8 -5.01811 | ACTTGCCTCACTCTA CCGA ACCA TCGG TTTTTCATTTGCTAG AHA_1075 1168501 - 1170042 + | hypothetical protein TERM 1346 1173168 - 1173186 + GT 77 -2.4 -5.0133 | gap 1, overlap 1173169 TTGCAATCTCATCTT C-GGCAG TTGATC CTGCCTG TTTTTTGGGGGGGTG AHA_1076 1169945 - 1175374 + | hypothetical protein TERM 1347 1175415 - 1175383 - T 91 -14.9 -3.01688 | opp_overlap 1175385, overlap 1175380 AAAATAATAGAATGA TTTCCCCCAGACCAT AAA ATGGTCTGGGGGATG GTGTCACGTGCGTTA TERM 1348 1175385 - 1175413 + T 100 -21.9 -2.63715 | opp_overlap 1175383 1175380 AATAATAGAATGATT TCCCCCAGACCAT AAA ATGGTCTGGGGGA TGGTGTCACGTGCGT AHA_1077 1176750 - 1175428 - | modification methylase DdeI AHA_1078 1180091 - 1178163 - | hypothetical protein TERM 1349 1179729 - 1179756 + g 74 -2.6 -4.87665 | gap 1 CAATGAGGTAAGGCG CTGC-TGGCCGTC GAT GATGGCCTTGAAG TTTTTATAACTGGCA TERM 1350 1180122 - 1180153 + r 100 -19 -3.49951 | opp_overlap 1180122 GAGATTGTAAAGAAA GTCACTGAATCAGA ATTT TCTGATTCAGTGAC TTGTATCAAACTATC TERM 1351 1180153 - 1180122 - R 100 -19 -4.45117 | opp_overlap 1180122 GAGATTGTAAAGAAA GTCACTGAATCAGA ATTT TCTGATTCAGTGAC TTGTATCAAACTATC AHA_1079 1180763 - 1180233 - | putative DNA repair protein RadC AHA_1080 1181935 - 1181510 - | hypothetical protein AHA_1081 1182302 - 1181955 - | hypothetical protein TERM 1352 1182345 - 1182364 + r 84 -13.6 -3.06183 | opp_overlap 1182345, overlap 1182347 TGGCAGAAATGAAAA GAGGAGGC AAAT GCCTCCTC TTGGATGGGAATGGA TERM 1353 1182364 - 1182345 - R 100 -13.6 -4.61873 | opp_overlap 1182345 1182347 TGGCAGAAATGAAAA GAGGAGGC AAAT GCCTCCTC TTGGATGGGAATGGA AHA_1082 1182835 - 1182386 - | hypothetical protein AHA_1083 1183171 - 1182848 - | hypothetical protein AHA_1084 1183418 - 1183768 + | helix-turn-helix domain-containing protein TERM 1354 1183783 - 1183812 + T 71 -5.7 -4.258 | gap 1, overlap 1183774 1183784 1183796 ATCATCCACCATTCA CTGGGGAG-GGGAT GGG GTCCCTTTCCCCAA TTTGTTGGTGAGTGG AHA_1085 1184619 - 1183780 - | hypothetical protein AHA_1086 1185746 - 1184757 - | hypothetical protein TERM 1355 1185763 - 1185821 + r 89 -13.9 -3.64703 | gap 1, opp_overlap 1185772 1185773, overlap 1185773 ACTATTCCTTGTTGA CGGCATAAATGGCGACGCCCGGATTGGC TTGT GCCAGTCCGGGTGAGGTCG-TTATGCGG TTTGAATAGGGAAGA TERM 1356 1185773 - 1185812 + r 81 -14.2 -2.6348 | opp_overlap 1185773 1185772, overlap 1185763 GTTGACGGCATAAAT GGCGACGCCCGGATTGGC TTGT GCCAGTCCGGGTGAGGTC GTTATGCGGTTTGAA AHA_1087 1186791 - 1185841 - | hypothetical protein TERM 1357 1187023 - 1186981 - R 100 -13.5 -4.57569 | opp_overlap 1186985, overlap 1186984 1186985 1186988 GTACGGGGCCAAAAA CGACCAAGGGGTTGGCATC GTAAT GATGCCAACCCCTTGTTTT ATATGGCGCTCCCGA TERM 1358 1187020 - 1186984 - R 100 -19.6 -3.23708 | opp_overlap 1186985, overlap 1186981 1186985 1186988 CGGGGCCAAAAACGA CCAAGGGGTTGGCATC GTAAT GATGCCAACCCCTTGT TTTATATGGCGCTCC TERM 1359 1187019 - 1186985 - R 100 -23.1 -2.53903 | opp_overlap 1186985, overlap 1186984 1186981 1186988 GGGGCCAAAAACGAC CAAGGGGTTGGCATC GTAAT GATGCCAACCCCTTG TTTTATATGGCGCTC TERM 1360 1186985 - 1187019 + r 100 -23.8 -4.53303 | opp_overlap 1186985 1186984 1186981 1186988 GGGGCCAAAAACGAC CAAGGGGTTGGCATCG TAA TGATGCCAACCCCTTG TTTTATATGGCGCTC TERM 1361 1187016 - 1186988 - R 100 -19 -3.4158 | opp_overlap 1186985, overlap 1186985 1186984 1186981 GCCAAAAACGACCAA GGGGTTGGCATC GTAAT GATGCCAACCCC TTGTTTTATATGGCG AHA_1089 1188308 - 1187154 - | hypothetical protein AHA_1090 1188389 - 1189123 + | hypothetical protein AHA_1091 1189139 - 1189570 + | hypothetical protein TERM 1362 1189620 - 1189602 - T 100 -16 -4.09822 | opp_overlap 1189602 AATGGACGACAGAAA GGCGACCC GAT GGGTCGCC TTTTTCATTGGCGGT TERM 1363 1189602 - 1189620 + T 100 -16 -4.86621 | opp_overlap 1189602 AATGGACGACAGAAA GGCGACCC GAT GGGTCGCC TTTTTCATTGGCGGT pheA 1190843 - 1189671 - | chorismate mutase/prephenate dehydratase TERM 1364 1190906 - 1190891 - R 100 -6.1 -6.06723 | opp_overlap 1190890 GGCTGCAAAAAAAAA CCTCC GCTAGG GGAGG CTCGATTCGTCTTTG AHA_1093 1191012 - 1190965 - | Phe leader peptide AHA_1094 1191186 - 1191785 + | hydrolase AHA_1095 1191811 - 1192089 + | hypothetical protein TERM 1365 1192100 - 1192110 + F 70 -6.8 -4.18702 | TCTGATTTATCCCTG CCCT TTA AGGG TTTATTCAGGATTGT TERM 1366 1192681 - 1192730 + G 86 -13.6 -3.85698 | gap 2, opp_overlap 1192680 1192681 TACGGCTTCAACAAG CGTCAGCTCGGGC-GCTG-GGGCA AGAG TGCCCACGGCTGCCTGAGCTACCG TTTCTCCGACCCCGA AHA_1096 1192135 - 1193007 + | hypothetical protein AHA_1097 1193103 - 1193651 + | hypothetical protein TERM 1367 1193662 - 1193686 + F 74 -10.7 -3.53444 | opp_overlap 1193664 1193666, overlap 1193656 1193664 GCTGATCCCTCATGC AACAGGCTCCT GCA GGGAGCCTGTC TTGATTGTTAACCCG TERM 1368 1193684 - 1193664 - f 81 -12.6 -3.05816 | opp_overlap 1193662 1193656 1193664, overlap 1193666 TGATCCCTCATGCAA CAGGCTCC TGCAG GGAGCCTG TCTTGATTGTTAACC TERM 1369 1193664 - 1193684 + F 88 -13.3 -3.34089 | opp_overlap 1193664 1193666, overlap 1193662 1193656 TGATCCCTCATGCAA CAGGCTCCT GCA GGGAGCCTG TCTTGATTGTTAACC AHA_1098 1193836 - 1194465 + | hypothetical protein TERM 1370 1194495 - 1194514 + F 100 -12.2 -5.37593 | GTGTCTTCATTTTTA CCCATGAC TTCG GTCATGGG TTTTTTCATTTCCGG AHA_1099 1194638 - 1195582 + | hypothetical protein AHA_1100 1195646 - 1196533 + | MerR family transcriptional regulator TERM 1371 1196867 - 1196896 + G 74 -14.9 -2.6063 | overlap 1196862 1196863 TGCGCCGGGACCAGG CCGTCAGCGCCGC GCTG GCGGAGCAGACGG TGGGTTGTCACTGGC TERM 1372 1197708 - 1197726 + G 72 -11.6 -3.38201 | opp_overlap 1197682, overlap 1197706 1197709 GTGGGCGGCGGGCAC CGGCGCCG ATG CGGCGCCC TATTTCCGGGTGTTC TERM 1373 1197709 - 1197725 + G 77 -15.1 -2.62439 | opp_overlap 1197682, overlap 1197708 1197706 TGGGCGGCGGGCACC GGCGCCG ATG CGGCGCC CTATTTCCGGGTGTT phrB 1196530 - 1197951 + | deoxyribodipyrimidine photolyase AHA_1102 1197953 - 1198381 + | putative transcriptional regulator TERM 1374 1198686 - 1198713 + G 74 -4.7 -4.60487 | opp_overlap 1198683 1198684, overlap 1198695 CATCGAGACCAACCT GGTTGCCACCG GTCATG CGCTGGCCGCC TTTTTGCCGCTGCTC AHA_1103 1198378 - 1199115 + | short chain dehydrogenase/reductase family oxidoreductase TERM 1375 1199394 - 1199383 - g 70 -7.2 -4.07568 | overlap 1199368 1199384 GCTTCTCGGTGAAAA GCCC GCAG GGGC TGGAGTACAACGGCC AHA_1104 1199112 - 1200371 + | amino-oxidase AHA_1105 1200368 - 1201150 + | plasmid partition ParA protein AHA_1106 1201150 - 1202406 + | cyclopropane-fatty-acyl-phospholipid synthase TERM 1376 1202464 - 1202506 + F 95 -9.6 -4.73682 | overlap 1202468 GGTTGCTGGCGGTGA AGTGGCAGCAGCCGGGCCCG CTG CTGGCACTGCTGCTGCTTCA TTTTCTCTTCTCCCC TERM 1377 1202468 - 1202502 + F 100 -15.6 -3.83346 | overlap 1202464 GCTGGCGGTGAAGTG GCAGCAGCCGGGCCCG CTG CTGGCACTGCTGCTGC TTCATTTTCTCTTCT AHA_1107 1202885 - 1203103 + | hypothetical protein TERM 1378 1203272 - 1203257 - g 72 -11.8 -3.39327 | opp_overlap 1203252 CCTTTACAGCGAGAA CGGCCG CTAT CGGCCG GGTCACTATCCTCAG AHA_1108 1203120 - 1203611 + | hypothetical protein AHA_1109 1203611 - 1204168 + | putative lipoprotein AHA_1110 1204293 - 1204760 + | DPS family protein TERM 1379 1204944 - 1204962 + F 100 -13.1 -5.95286 | TTTATCCACCCGCTT GCCGCCC TGTTT GGGCGGC TTTTTTGTTTTTGAT AHA_1111 1205088 - 1206737 + | hydroxylamine reductase TERM 1380 1206783 - 1206802 + F 100 -15 -5.40072 | ATGTTGTAAGCCTTT GGCGAGCC TGAT GGCTCGCC TTTTTTTAACGACCC AHA_1112 1206852 - 1207871 + | iron-sulfur cluster-binding protein galE-1 1207957 - 1208982 + | UDP-glucose 4-epimerase TERM 1381 1209138 - 1209109 - T 89 -16.5 -2.50016 | opp_overlap 1209114, overlap 1209114 TTGCAGCATGAATAG CAAAACGCCCCGG CATG CCGGGGCGTTTTT TTATGTGCCGGAACG TERM 1382 1209114 - 1209133 + T 100 -16.4 -5.71712 | opp_overlap 1209109 1209114 GCATGAATAGCAAAA CGCCCCGG CATG CCGGGGCG TTTTTTTATGTGCCG TERM 1383 1209133 - 1209114 - T 100 -16.4 -4.44797 | opp_overlap 1209114, overlap 1209109 GCATGAATAGCAAAA CGCCCCGG CATG CCGGGGCG TTTTTTTATGTGCCG AHA_1114 1209906 - 1209157 - | outer membrane protein TERM 1384 1209768 - 1209781 + g 72 -3.7 -4.57569 | CGTTGGACATCTCGA CCAGG ATTT CCGGG TTTTTGACCAGATAG AHA_1115 1209933 - 1210028 + | hypothetical protein TERM 1385 1210202 - 1210235 + F 91 -14.7 -3.07043 | opp_overlap 1210209, overlap 1210209 CCGCCATTTATTCAG CCAGAAAGGCCATCC GAAA GGATGGCCTTTTTGC TATTCAAATCCTCGC TERM 1386 1210209 - 1210228 + F 100 -13.6 -4.87626 | opp_overlap 1210209, overlap 1210202 TTATTCAGCCAGAAA GGCCATCC GAAA GGATGGCC TTTTTGCTATTCAAA TERM 1387 1210228 - 1210209 - f 100 -13.6 -3.92869 | opp_overlap 1210209 1210202 TTATTCAGCCAGAAA GGCCATCC GAAA GGATGGCC TTTTTGCTATTCAAA TERM 1388 1211196 - 1211211 + G 71 -4.6 -4.40358 | opp_overlap 1211196 GCACCCAACAGCAAT GGCTCT CTGC AGTGCC TTTTATCAGCTGGCT AHA_1117 1210730 - 1211524 + | transcriptional activator protein AhyR/asaR AHA_1118 1211755 - 1212273 + | HcpA-like protein TERM 1389 1212308 - 1212360 + F 71 -8.1 -3.87641 | GTTATTCCTTGTAGT GCACCCCATGGCCTGACGATGGCAG TGC CAGCCGTCGTCAGGCCCGTGCAAGC TTTCTCCGACCTGTT TERM 1390 1212363 - 1212395 + F 83 -6.2 -4.89567 | overlap 1212364 GGCCCGTGCAAGCTT TCTCCGACCTGTTC AGCTG GATGAGGTCGGAGC TTTTGTGTTTTGCCA TERM 1391 1212364 - 1212394 + F 71 -9.7 -3.52656 | overlap 1212363 GCCCGTGCAAGCTTT CTCCGACCTGTTC AGCTG GATGAGGTCGGAG CTTTTGTGTTTTGCC AHA_1119 1212752 - 1215535 + | Rhs element Vgr protein AHA_1120 1215532 - 1216332 + | type III secretion protein AHA_1121 1216332 - 1218284 + | hypothetical protein AHA_1122 1218284 - 1218982 + | hypothetical protein AHA_1123 1219157 - 1219858 + | hypothetical protein TERM 1392 1219940 - 1219977 + T 100 -17.1 -4.35044 | opp_overlap 1219946, overlap 1219946 CGAAATAATACGGTG CCAAAACCCCCATCAGC TTAT GCCGATGGGGGTTTTTG TTTGTCTTTCAATGA TERM 1393 1219971 - 1219946 - T 100 -16.9 -4.09511 | opp_overlap 1219940 1219946 AATACGGTGCCAAAA CCCCCATCAGC TTAT GCCGATGGGGG TTTTTGTTTGTCTTT TERM 1394 1219946 - 1219971 + T 100 -14.7 -5.48623 | opp_overlap 1219946, overlap 1219940 AATACGGTGCCAAAA CCCCCATCAGC TTAT GCCGATGGGGG TTTTTGTTTGTCTTT AHA_1124 1220870 - 1219986 - | LysR family transcriptional regulator budA 1220980 - 1221759 + | alpha-acetolactate decarboxylase alsS 1221787 - 1223457 + | acetolactate synthase TERM 1395 1223497 - 1223532 + T 100 -29.2 -3.61398 | opp_overlap 1223499 GCGGTCCGCCCAACG CAGAGCGCCCCTTGCC AATC GGCAAGGGGCGCTCTG TTATTGCGAAAGGAA TERM 1396 1223530 - 1223499 - T 100 -26 -2.52464 | opp_overlap 1223497 GGTCCGCCCAACGCA GAGCGCCCCTTGCC AATC GGCAAGGGGCGCTC TGTTATTGCGAAAGG AHA_1127 1224129 - 1223551 - | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme TERM 1397 1223779 - 1223750 - G 70 -7.8 -4.07687 | AGCTGTGCCTGAAAA GCGGGATGGCAG GTGGCG CTGGCATCCCCC AGCAGATCGTGGTGC TERM 1398 1223926 - 1223895 - G 74 -13 -3.30124 | gap 1 GCGTATCGCGGATAA CCTCGCTGCCGGGCA GGC CGCCCGGCA-CGACG ATGGCCTCGAACTCC panE 1225110 - 1224163 - | 2-dehydropantoate 2-reductase AHA_1129 1225468 - 1225950 + | nucleotide-binding protein TERM 1399 1225960 - 1225980 + T 91 -14.7 -3.01712 | GACTGATGATGGCCG GGGGAGGGC ACG GCTCTCCCC TGTTGCCGGCAGCAA TERM 1400 1226034 - 1226000 - T 78 -13.9 -2.56596 | gap 1, opp_overlap 1226008, overlap 1226008 GCCGGCAGCAAGCCA TA-AAAAAACCGGAGC AGCA GCTCCGGTTTTTTGTA TCCCTGATACCCGTT TERM 1401 1226025 - 1226008 - T 100 -12.7 -5.66684 | opp_overlap 1226008, overlap 1226000 CAAGCCATAAAAAAA CCGGAGC AGCA GCTCCGG TTTTTTGTATCCCTG TERM 1402 1226008 - 1226025 + T 100 -12.7 -5.38047 | opp_overlap 1226008 1226000 CAAGCCATAAAAAAA CCGGAGC AGCA GCTCCGG TTTTTTGTATCCCTG AHA_1130 1226895 - 1226053 - | outer membrane protein AHA_1131 1228431 - 1227052 - | muropeptide permease AmpG TERM 1403 1228931 - 1228961 + r 70 -6.8 -4.14627 | opp_overlap 1228912 GCCGGCGACCCAGCG CGCGGGGTGG CGGAATGTGAT CCGCTCCGCG TTATTTGTCTGCCAG AHA_1132 1229513 - 1228962 - | peptidyl-prolyl cis-trans isomerase B AHA_1133 1230101 - 1229529 - | hypothetical protein AHA_1134 1231268 - 1230126 - | putative ribosomal RNA small subunit methyltransferase D (rRNA (guanine-N(2)-)-methyltransferase) AHA_1135 1231475 - 1231783 + | BolA protein nqrA 1232225 - 1233568 + | Na(+)-translocating NADH-quinone reductase subunit A nqrB 1233572 - 1234801 + | Na(+)-translocating NADH-quinone reductase subunit B nqrC 1234791 - 1235579 + | Na(+)-translocating NADH-quinone reductase subunit C nqrD 1235572 - 1236204 + | NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit nqrE-1 1236208 - 1236804 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 1404 1238031 - 1238018 - g 76 -6.7 -4.4261 | opp_overlap 1238017 TGTTGAAGACGAAAA CATCC TGCT GGATG ACTTTGGTGGTTAAT nqrF 1236822 - 1238045 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 1405 1238071 - 1238090 + G 100 -13.6 -5.10461 | opp_overlap 1238069 1238068 GTGTTGTAAAGACCT GGCTAGCC TTCG GGCTAGCC TTTTTCTTGACTGGG AHA_1142 1238049 - 1239089 + | thiamine biosynthesis lipoprotein ApbE AHA_1143 1239101 - 1239325 + | hypothetical protein TERM 1406 1239395 - 1239372 - T 95 -18.2 -2.59431 | opp_overlap 1239372, overlap 1239368 GTGCCGGATAAGCGA CGGGCTGACC TGAT GGTCAGCCCG TTTTTTTTGCAAAAG TERM 1407 1239372 - 1239395 + T 100 -18.2 -5.75342 | opp_overlap 1239372 1239368 GTGCCGGATAAGCGA CGGGCTGACC TGAT GGTCAGCCCG TTTTTTTTGCAAAAG AHA_1144 1239625 - 1239413 - | hypothetical protein dinB 1239758 - 1240810 + | DNA polymerase IV AHA_1146 1240879 - 1243020 + | methyl-accepting chemotaxis protein TERM 1408 1243056 - 1243034 - f 100 -11.3 -5.56673 | gap 1 AGGGATAAGAAAAAA GGCGCCATCC AACC GGA-GGCGCC AAACACATTCAGATG gcvA 1243304 - 1244224 + | DNA-binding transcriptional activator GcvA AHA_1148 1244217 - 1244855 + | esterase/lipase/thioesterase family protein AHA_1149 1244888 - 1245274 + | hypothetical protein AHA_1150 1245267 - 1246361 + | putative RNA 2'-O-ribose methyltransferase TERM 1409 1246383 - 1246420 + T 100 -17.1 -3.86897 | opp_overlap 1246389, overlap 1246386 1246389 GCGATGCGCCACTGA CCACAAGGCCGACAACC CACG GGTTGTCGGCCTTGTCA TTTCTGCGCCATCAG TERM 1410 1246386 - 1246417 + T 100 -23.2 -3.01125 | opp_overlap 1246389, overlap 1246383 1246389 ATGCGCCACTGACCA CAAGGCCGACAACC CACG GGTTGTCGGCCTTG TCATTTCTGCGCCAT TERM 1411 1246414 - 1246389 - T 100 -19.1 -3.4252 | opp_overlap 1246389 1246386 1246383 CGCCACTGACCACAA GGCCGACAACC CACG GGTTGTCGGCC TTGTCATTTCTGCGC TERM 1412 1246389 - 1246414 + T 100 -19.1 -3.64915 | opp_overlap 1246389, overlap 1246386 1246383 CGCCACTGACCACAA GGCCGACAACC CACG GGTTGTCGGCC TTGTCATTTCTGCGC AHA_1151 1246872 - 1246432 - | hypothetical protein TERM 1413 1246971 - 1246948 - R 95 -11.8 -4.52589 | opp_overlap 1246952, overlap 1246952 CGGCGCGAGATAAAA CAAAGGGAGC CGAA GCTCCCTTTA AAAATCAATATCTTG TERM 1414 1246952 - 1246967 + r 74 -10.4 -3.57971 | opp_overlap 1246948 1246952 GCGAGATAAAACAAA GGGAGC CGAA GCTCCC TTTAAAAATCAATAT TERM 1415 1246967 - 1246952 - R 100 -10.4 -4.83243 | opp_overlap 1246952, overlap 1246948 GCGAGATAAAACAAA GGGAGC CGAA GCTCCC TTTAAAAATCAATAT AHA_1152 1248000 - 1246993 - | isocitrate dehydrogenase TERM 1416 1247960 - 1247984 + g 93 -2.7 -5.61881 | overlap 1247961 1247963 ATGATGCTGGGGCCG ATGCCGTCGCC CGG GATGACGGTAA TTTTTCTTTTTGACA xni 1249052 - 1248147 - | exodeoxyribonuclease IX TERM 1417 1249059 - 1249043 - G 100 -15.1 -5.28176 | opp_overlap 1249040 1249043 CCCAGCGACAAAAAA GGGGCGC CAT GCGCCCC TCGTTTCAGCTGTGC TERM 1418 1249043 - 1249059 + g 79 -15.1 -2.93585 | opp_overlap 1249043, overlap 1249040 CCCAGCGACAAAAAA GGGGCGC CAT GCGCCCC TCGTTTCAGCTGTGC AHA_1154 1250436 - 1249081 - | lysine decarboxylase family protein TERM 1419 1249840 - 1249860 + g 74 -10.3 -3.72893 | GCGCACCCGCTGCTT GGCGTGGCC GAC GGCGGCGCC TTTCATCGGGCCCTC TERM 1420 1250510 - 1250489 - R 86 -10.1 -4.36914 | opp_overlap 1250490, overlap 1250490 TCCCTGGGGAGAAAA CGGGATGCC CTGT GGCATCCCT TGAATTTGATAGTAG TERM 1421 1250509 - 1250490 - R 87 -13.6 -3.21934 | opp_overlap 1250490, overlap 1250489 CCCTGGGGAGAAAAC GGGATGCC CTGT GGCATCCC TTGAATTTGATAGTA TERM 1422 1250490 - 1250509 + r 88 -13.6 -3.31415 | opp_overlap 1250490 1250489 CCCTGGGGAGAAAAC GGGATGCC CTGT GGCATCCC TTGAATTTGATAGTA AHA_1155 1252206 - 1250587 - | GGDEF domain-containing protein AHA_1156 1254567 - 1252297 - | TPR repeat-containing protein queF 1255610 - 1254702 - | 7-cyano-7-deazaguanine reductase TERM 1423 1255849 - 1255888 + G 72 -13.4 -2.72144 | gap 1, overlap 1255869 GAGCCCAAGGAGGGG CGGGTGGCCTGGCGC-CCG CAT CGGCGCGCCGAGCCCGCCG ATTTCACGGCGATGA TERM 1424 1255869 - 1255889 + G 77 -12.5 -3.53811 | overlap 1255849 GGCCTGGCGCCCGCA TCGGCGCGC CGA GCCCGCCGA TTTCACGGCGATGAA AHA_1158 1255708 - 1256256 + | Syd protein TERM 1425 1256302 - 1256279 - T 95 -12.4 -4.41494 | opp_overlap 1256280, overlap 1256280 CAGCCGCAATGAAAA GCGCCTTGCC AATT GGCAAGGCGT TTTTGTTTGGTTCAC TERM 1426 1256280 - 1256301 + T 100 -15.9 -5.38326 | opp_overlap 1256279 1256280 AGCCGCAATGAAAAG CGCCTTGCC AATT GGCAAGGCG TTTTTGTTTGGTTCA TERM 1427 1256301 - 1256280 - T 100 -15.9 -3.24414 | opp_overlap 1256280, overlap 1256279 AGCCGCAATGAAAAG CGCCTTGCC AATT GGCAAGGCG TTTTTGTTTGGTTCA AHA_1159 1257111 - 1256326 - | Zn-ribbon-containing protein TERM 1428 1256856 - 1256911 + g 70 -13.2 -2.83271 | overlap 1256858 GCAACTGGAGTTTGG GGGCGAGCAGGCCGGCTTGATTGAGC TGCT GCTCGGCCAGCTTGACCTGCTCGCTC TGGTTGTCCGGGTGC TERM 1429 1257481 - 1257471 - R 74 -8.2 -3.92625 | overlap 1257460 1257472 GAGAGCTTAACCAAA GCGC GGG GCGC TGAACAGCGGGGCAA AHA_1160 1257736 - 1257500 - | hypothetical protein AHA_1161 1258093 - 1257794 - | hypothetical protein AHA_1162 1259191 - 1258163 - | hypothetical protein TERM 1430 1259359 - 1259376 + H 80 -4.8 -5.03145 | AGAGGATAGGGGGGA GGGTGT ATAGTA ACGCCC TTTTTTGCAAAGTTC AHA_1163 1259455 - 1259790 + | hypothetical protein AHA_1164 1259787 - 1260560 + | RNA pseudouridine synthase family protein AHA_1165 1260637 - 1261077 + | protein MioC TERM 1431 1261103 - 1261132 + F 100 -14.4 -4.67048 | gap 1 TTTTTATCCTTTATT CATCCCCGCTCAG CCCGT CTG-GCGGGGATG TTTATTTTGCGATAA TERM 1432 1262883 - 1262857 - g 76 -6.6 -4.4768 | overlap 1262844 1262881 GACGAAGACAAGAAA GTCTTCGAAAGC GGT ACCTCCAAAGAC ACCTACCAAGTTGGT lamB 1261489 - 1262922 + | maltoporin TERM 1433 1262948 - 1262967 + F 100 -15 -4.86731 | opp_overlap 1262944 AAGTTAAGTTAGTCA CTGCCCCC GTAT GGGGGCAG TTTTGTTTCGCCGGG AHA_1167 1262999 - 1263985 + | maltose operon periplasmic protein TERM 1434 1264022 - 1264041 + F 100 -10.7 -4.7497 | ATAATATTTATTTGA GGCCTCC CTTGTT GGAGGCC TTTTTAATCGGTAGA ptsG 1264417 - 1265847 + | glucose-specific PTS system IIBC components TERM 1435 1265897 - 1265880 - T 95 -12.7 -4.09243 | opp_overlap 1265880 CAGAGTTGTTGAAAA GGGAGGC ACAA GCCTCCC TTTTTGCTGGGCGTC TERM 1436 1265880 - 1265897 + T 100 -12.7 -4.72986 | opp_overlap 1265880 CAGAGTTGTTGAAAA GGGAGGC ACAA GCCTCCC TTTTTGCTGGGCGTC TERM 1437 1266008 - 1265993 - T 100 -11.8 -5.28942 | opp_overlap 1265993 GAGCTCAAAGAAAAA GGCGCC CATG GGCGCC TTTGCTGCATCAGAC TERM 1438 1265993 - 1266008 + T 83 -11.8 -3.76224 | opp_overlap 1265993 GAGCTCAAAGAAAAA GGCGCC CATG GGCGCC TTTGCTGCATCAGAC AHA_1169 1266411 - 1266028 - | hypothetical protein TERM 1439 1266523 - 1266494 - R 100 -17.3 -4.08394 | opp_overlap 1266500, overlap 1266500 ACAGGGGCGCCAAAA TCAAAAGGGCGCC ATCA GGCGCCCTTTTAA ATCACCGCAAAACCG TERM 1440 1266500 - 1266517 + r 100 -14.1 -4.18018 | opp_overlap 1266500 1266494 GCGCCAAAATCAAAA GGGCGCC ATCA GGCGCCC TTTTAAATCACCGCA TERM 1441 1266517 - 1266500 - R 100 -14.1 -4.67038 | opp_overlap 1266500, overlap 1266494 GCGCCAAAATCAAAA GGGCGCC ATCA GGCGCCC TTTTAAATCACCGCA dapD 1267367 - 1266540 - | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase glnD 1270188 - 1267534 - | protein-P-II uridylyltransferase TERM 1442 1270278 - 1270260 - R 100 -13.1 -5.35224 | opp_overlap 1270260 CTGATAAAAACAAAA CCCCGGC GGGAG GCCGGGG TTTGATGTTAACCGT TERM 1443 1270260 - 1270278 + r 93 -13.1 -3.92592 | opp_overlap 1270260 CTGATAAAAACAAAA CCCCGGC GGGAG GCCGGGG TTTGATGTTAACCGT map 1271074 - 1270286 - | methionine aminopeptidase, type I rpsB 1271434 - 1272162 + | ribosomal protein S2 TERM 1444 1272213 - 1272233 + F 100 -14 -4.35604 | opp_overlap 1272180 GATGTAATTGGTTAG CAGGGGCC CTTGT GGCCCCTG TTTCTTGTCAATTCA tsf 1272267 - 1273148 + | elongation factor Ts TERM 1445 1273174 - 1273195 + F 100 -15.9 -4.03234 | TTTTCCGTTTCCCCA GACCGCGAC TTAT GTCGCGGTC TTTATATGACCAGGA pyrH 1273220 - 1273954 + | uridylate kinase frr 1274049 - 1274606 + | ribosome recycling factor TERM 1446 1274629 - 1274655 + F 100 -15.9 -4.84918 | opp_overlap 1274626 ACAGGTATATTACGA GCGCCGTGTAG TGCCC CTGCACGGCGC TTTTGTCTTTGTGGG uppS 1274679 - 1275455 + | undecaprenyl diphosphate synthase TERM 1447 1275962 - 1275984 + G 81 -4 -5.00616 | overlap 1275960 1275964 1275965 GTGATGGGACTGGTC TGGGCGGCAG ATT CTGGCGCGTA TTTTTTCGGCAAGGC cdsA 1275482 - 1276339 + | phosphatidate cytidylyltransferase TERM 1448 1277426 - 1277436 + G 86 -8.2 -4.63218 | opp_overlap 1277426 1277425 1277423 GCCGCCAACGAAGAG GCCG TAG CGGC TTTTCTTGCAGAGCG dxr 1276403 - 1277596 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase ecfE 1277679 - 1279031 + | peptidase EcfE AHA_1181 1279066 - 1281489 + | OMP85 family outer membrane protein TERM 1449 1281502 - 1281521 + F 91 -15 -3.10796 | TAAGGACGGACTCTG CCCCCACC CAGC GGTGGGGG TATTCAATGATGGGA AHA_1182 1281638 - 1282150 + | outer membrane protein TERM 1450 1283105 - 1283084 - g 71 -5 -4.39696 | CTGCAAACCAATAAA GAGTGGCG CAAGAC CGCCGCCC GGGTGATGCGTATCG lpxD 1282154 - 1283173 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 1451 1283232 - 1283217 - g 86 -4.6 -5.10933 | overlap 1283218 CTACTGAAAAGAAAA GCCTGG GTAT CCAGGA AATAATGGATCTGCT fabZ 1283198 - 1283659 + | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ TERM 1452 1283731 - 1283748 + G 78 -6.9 -4.57755 | opp_overlap 1283731, overlap 1283726 GCCGTCATCGGTAAA GGGGTTG AAAT CGGCCCC TTTTCTGTCATCGGT lpxA 1283665 - 1284456 + | acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase TERM 1453 1284476 - 1284499 + G 74 -14.6 -2.61264 | overlap 1284475 GTTCGTATCGGTATC GTCGCCGGAG AGGT TTCCGGCGAC ATTCTGGCTGCCGGC TERM 1454 1284837 - 1284792 - g 73 -6.7 -4.25104 | gap 1 GCGCCGGTATCAAAA CGGTTCACTACGTCAGCCCCTC GGT GTGGGCCTGGCGCCA-GAACCG CATTCACAAGATCAA lpxB 1284449 - 1285588 + | lipid-A-disaccharide synthase TERM 1455 1285593 - 1285643 + F 100 -14.7 -4.41047 | opp_overlap 1285590 TCGGCAGATAACTTC CGGGCGGCCGCAGGGGCTG-CGCCA ACG TGACGCCAGGCCCTGCGGG-GCCTG TTTTGATTCAAGGCT TERM 1456 1285743 - 1285757 + G 70 -10 -3.61398 | overlap 1285724 TGGTGGGTGACGTGG TCACCG CCG CGGTGA TTCTTGACCCGGCCA TERM 1457 1286243 - 1286225 - g 70 -10.2 -3.66666 | CGCAAAAGTTTCAAA CCGGTGCG TCG CGCACTGG GGATCGAATAGACCA rnhB 1285619 - 1286254 + | ribonuclease HII TERM 1458 1287837 - 1287823 - g 73 -11.4 -3.55622 | CGCAACGCCGGCAAA CACGCC GGC GGCGTG GTGATCGCGCCCACC dnaE 1286293 - 1289772 + | DNA polymerase III, alpha subunit TERM 1459 1289945 - 1289920 - g 82 -3.3 -5.18726 | overlap 1289938 GCTGGAGAAGAAAAA CGAAGAGCT GACCAAGA AGATCTTCG GCGATCTGGGGGCCT accA 1289753 - 1290739 + | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit TERM 1460 1290766 - 1290792 + F 100 -23.8 -5.40072 | TGTCGCACCAGGCTG GAAGGCCCCCGC TCT GCGGGGGCCTTC TTTTTTTGGGCGAGA TERM 1461 1291024 - 1291008 - f 74 -10.1 -3.64703 | CTCTGCGGACGTAAA CAGGCCA GCC CGGCCTG ACTCACAGGAATGTT AHA_1190 1291144 - 1292664 + | DNA-binding transcriptional activator CadC TERM 1462 1292744 - 1292699 - f 100 -16.8 -3.53012 | gap 2, opp_overlap 1292692 1292699 GGCCCTGTCGCCAAA GCGGCGCTCACCGCCGGTTGCC TAGG GGCG-CCGGCGG-GTGCACCGC CTGACATCATCTCTC cadB 1293430 - 1294764 + | lysine/cadaverine antiporter AHA_1192 1294841 - 1296973 + | lysine decarboxylase, constitutive TERM 1463 1296990 - 1297005 + F 100 -11.8 -4.64766 | opp_overlap 1296990 CGAGAGTGACAACAA CGGGCC GCAA GGCCCG TTTTTCCCATCTGGG TERM 1464 1297005 - 1296990 - f 86 -11.8 -3.83568 | opp_overlap 1296990 CGAGAGTGACAACAA CGGGCC GCAA GGCCCG TTTTTCCCATCTGGG TERM 1465 1297017 - 1297028 + F 81 -2.2 -5.42259 | CCCGTTTTTCCCATC TGGG TTCA TCCA TTTTTTTGCGAGTCA TERM 1466 1297084 - 1297109 + G 72 -11.7 -3.38046 | opp_overlap 1297101, overlap 1297082 GTCCCACGTGGTGTT CGGCTGCGCCG GCAA CAGCGCCGCCG TGTTTCCCATGCGCC TERM 1467 1297250 - 1297216 - g 73 -11.3 -3.60296 | GATGGTGATGCCAAA CGGCCATATCCGCCA GCTGA TGGCGGGGCTGGCCG ACATCGGCGTACTGG pdxY-1 1297046 - 1297912 + | pyridoxal kinase AHA_1194 1299343 - 1297922 - | cation (Na+-coupled) multidrug resistance efflux pump AHA_1195 1300358 - 1299450 - | putative HTH-type transcriptional regulator YcaN TERM 1468 1300388 - 1300377 - H 76 -3 -5.10497 | AATTCAGCGAAAAAA TGTT GAGC AACA GGGTACGTCAGCGGA AHA_1196 1300872 - 1302158 + | serine transporter family protein TERM 1469 1302188 - 1302207 + T 100 -15 -5.60993 | opp_overlap 1302188 CGCTTGAATGAAGAA GCCGCCTC GCAA GAGGCGGC TTTTTTTATGGCCGG TERM 1470 1302207 - 1302188 - T 100 -15 -3.81146 | opp_overlap 1302188 CGCTTGAATGAAGAA GCCGCCTC GCAA GAGGCGGC TTTTTTTATGGCCGG AHA_1197 1303266 - 1302226 - | ribonuclease Z, putative TERM 1471 1303600 - 1303614 + G 76 -10 -3.86346 | opp_overlap 1303577 1303580, overlap 1303594 CAGCAGACCCTGACC GAGCTG GGC CAGCTC TTTCTGGCCCGCTGC AHA_1198 1303423 - 1304325 + | LysR family transcriptional regulator TERM 1472 1304303 - 1304344 + T 100 -23.1 -3.35679 | opp_overlap 1304308, overlap 1304304 1304308 CCGAGGCGCTGGCCG ACAAATCACCGCAGCCGGC ATGA GCCGGCTGCGGTGATTGGG TTATGCCTGCGCCAG TERM 1473 1304304 - 1304343 + T 100 -26.6 -2.61264 | opp_overlap 1304308, overlap 1304303 1304308 CGAGGCGCTGGCCGA CAAATCACCGCAGCCGGC ATGA GCCGGCTGCGGTGATTGG GTTATGCCTGCGCCA TERM 1474 1304339 - 1304308 - T 100 -26 -3.85698 | opp_overlap 1304304 1304303 1304308 GCGCTGGCCGACAAA TCACCGCAGCCGGC ATGA GCCGGCTGCGGTGA TTGGGTTATGCCTGC TERM 1475 1304308 - 1304339 + T 100 -26 -3.24245 | opp_overlap 1304308, overlap 1304304 1304303 GCGCTGGCCGACAAA TCACCGCAGCCGGC ATGA GCCGGCTGCGGTGA TTGGGTTATGCCTGC AHA_1199 1305364 - 1304345 - | dienelactone hydrolase domain-containing protein AHA_1200 1306221 - 1305310 - | dienelactone hydrolase domain-containing protein TERM 1476 1306789 - 1306809 + G 78 -3.1 -5.0133 | CGCCATTCGCGCCGT GCTCTGGCC CAA GATCAGCGC TTTTTTGCACCACTA TERM 1477 1307050 - 1307074 + G 74 -2 -4.91511 | opp_overlap 1307050, overlap 1307060 1307065 TCATCAGTGCATCAA TCTGCGCTTG CCGAC CCAGGGCGGA TTTTTCTCCTGGAGT AHA_1201 1306469 - 1307362 + | putative HTH-type transcriptional regulator YcjZ TERM 1478 1308426 - 1308460 + G 75 -14.2 -2.82635 | overlap 1308431 GTCTCGCTGGCCCGC CTCACCGCCCGTGGCG CGC CGCTGCGGGCCTTGAG TCTGGTGCTCGCCAT AHA_1202 1307499 - 1308779 + | inner membrane protein YjeH TERM 1479 1308790 - 1308806 + T 100 -11.5 -5.07486 | opp_overlap 1308790 AGTAACCCGAAAAAA GCCCCGC AGT GTGGGGC TTTTTGTTGCAGGTC TERM 1480 1308806 - 1308790 - T 100 -9.3 -5.10029 | opp_overlap 1308790 AGTAACCCGAAAAAA GCCCCGC AGT GTGGGGC TTTTTGTTGCAGGTC AHA_1203 1309359 - 1308820 - | ribosomal-protein-alanine N-acetyltransferase, putative TERM 1481 1308948 - 1308925 - G 100 -17.4 -3.64703 | GCCCTCGTAGTGAAA GCCCGCCCGC TCGA GCAGGCGGGC GGAGGGGAGGTTGGG TERM 1482 1309489 - 1309459 - R 71 -11.9 -2.50113 | gap 1, overlap 1309458 CATGATCCGACCAAC CCGAGCTGACC-GG TGAG CCTGGTCAGCTCGT CACGCCACTGTTGCT AHA_1204 1311182 - 1309443 - | ABC transporter ATP-binding protein TERM 1483 1309607 - 1309650 + g 73 -10.8 -3.54475 | gap 1 CTTCGTCATCCGCCG GGCCGGCCGGGGCCTGCCCCA TGG TGGGGGCGGCCA-GGCTTGCC TTGTCTGCTGCCGGC TERM 1484 1311532 - 1311514 - R 100 -17.4 -5.60993 | GGCGGGACAAAAAAA CGCCCCGC TGG GCGGGGCG TGGTGATGGGGATGT AHA_1205 1311984 - 1311547 - | hypothetical protein TERM 1485 1312074 - 1312092 + r 76 -13.1 -2.72227 | GCCGGTTCGCGTCAT CCGCCCC TCATC GGGGCGG TCATTACCAGATCTT AHA_1206 1314141 - 1312096 - | M13 family peptidase TERM 1486 1314681 - 1314710 + G 83 -14.3 -3.53224 | gap 1 GGCGCCGGCCTGCGC GGGCTGGC-AGGCA TGG TGCCGAGCCAGCCC TTTGCCGGCGGCCTG tilS 1314255 - 1315595 + | tRNA(Ile)-lysidine synthetase TERM 1487 1315651 - 1315621 - T 100 -17.7 -3.33261 | gap 1, opp_overlap 1315622 1315625 1315628 1315640, overlap 1315625 1315628 CGCCAACGCGGATAA CGGACAAGGCCGGC ATAT GCCGGCCTTGT-CG TCTCCTGCGGCTGGC TERM 1488 1315622 - 1315651 + T 95 -17.9 -2.79183 | opp_overlap 1315621 1315625 1315628, overlap 1315625 1315628 1315640 GCCAACGCGGATAAC GGACAAGGCCGGC ATAT GCCGGCCTTGTCG TCTCCTGCGGCTGGC TERM 1489 1315648 - 1315625 - T 95 -18.2 -2.59927 | opp_overlap 1315622 1315625 1315628 1315640, overlap 1315621 1315628 AACGCGGATAACGGA CAAGGCCGGC ATAT GCCGGCCTTG TCGTCTCCTGCGGCT TERM 1490 1315625 - 1315648 + T 95 -18.2 -2.66435 | opp_overlap 1315625 1315621 1315628, overlap 1315622 1315628 1315640 AACGCGGATAACGGA CAAGGCCGGC ATAT GCCGGCCTTG TCGTCTCCTGCGGCT TERM 1491 1315645 - 1315628 - T 95 -14.1 -3.45054 | opp_overlap 1315628 1315625 1315622 1315640, overlap 1315625 1315621 GCGGATAACGGACAA GGCCGGC ATAT GCCGGCC TTGTCGTCTCCTGCG TERM 1492 1315628 - 1315645 + T 95 -14.1 -3.484 | opp_overlap 1315625 1315621 1315628, overlap 1315625 1315622 1315640 GCGGATAACGGACAA GGCCGGC ATAT GCCGGCC TTGTCGTCTCCTGCG TERM 1493 1315682 - 1315698 + T 70 -9.3 -3.62046 | CGGTTCAGTCCAGCA GGCCGGC CTT GCCCGCC TTCTTGCGGGCATAG AHA_1208 1316606 - 1315671 - | GGDEF domain-containing protein TERM 1494 1317111 - 1317075 - g 70 -12.3 -3.14132 | gap 1, opp_overlap 1317093 1317094, overlap 1317093 1317094 1317096 CGCCGTGGTGATCAA GCAGCTGGGTGAGCAG AAGCAG CTGCACACCC-GCCGC GCCCAGCTCGGGGTG TERM 1495 1317913 - 1317948 + G 71 -8.8 -3.85698 | overlap 1317900 CAGCACGTGATCATC GCGGGCTTTGGTCGGG CCGG CCAGACTTGCGCCCGC TTTCTCAAGCAGGAG AHA_1209 1316704 - 1318644 + | Kef-type K+ transport system, membrane component AHA_1210 1319871 - 1318726 - | patatin TERM 1496 1319980 - 1319951 - R 85 -4.2 -5.22289 | opp_overlap 1319952 1319953, overlap 1319953 TATCAAATATAAAAA CAGGCCTGCCAA CCATTT TTTGCAGGCCCT TTTTGAGGCTGTTCA TERM 1497 1319952 - 1319979 + r 73 -5.5 -4.62302 | opp_overlap 1319951 1319953, overlap 1319953 ATCAAATATAAAAAC AGGCCTGCCAA CCATTT TTTGCAGGCCC TTTTTGAGGCTGTTC TERM 1498 1319978 - 1319953 - R 80 -9 -4.22132 | opp_overlap 1319953 1319952, overlap 1319951 TCAAATATAAAAACA GGCCTGCCAA CCATTT TTTGCAGGCC CTTTTTGAGGCTGTT AHA_1211 1320811 - 1319993 - | esterase/lipase TERM 1499 1320883 - 1320898 + r 84 -3.2 -5.35222 | TCCTGTGGTTTTTAT GTGCGA ACGG TCGTGC TTTTTTGTCGGTTTT AHA_1212 1321515 - 1320934 - | transcriptional regulator TERM 1500 1321597 - 1321612 + r 71 -10.4 -3.28912 | GTTGAGGGTTGGATG GGAGGG TTAA CCCTCC TTGATATCCATCTGC AHA_1213 1322247 - 1321603 - | positive regulator AgmR AHA_1214 1322406 - 1323032 + | glutathione S-transferase, N-terminal TERM 1501 1323103 - 1323073 - T 100 -25.6 -3.53343 | opp_overlap 1323073 AACGGCTGGTGTAAA CAGAGAGGGGAGCC ACT GGCTCCCCTCTCTG TTTGGGGTTGATTCC TERM 1502 1323073 - 1323103 + T 100 -25.6 -3.69434 | opp_overlap 1323073 AACGGCTGGTGTAAA CAGAGAGGGGAGCC ACT GGCTCCCCTCTCTG TTTGGGGTTGATTCC malS 1325237 - 1323129 - | periplasmic alpha-amylase precursor TERM 1503 1325424 - 1325407 - R 100 -12.7 -5.24129 | opp_overlap 1325407 CGCGCCCATAAAAAA GCCGGTC GATA GACCGGC TTGTTGCATTGCCAC TERM 1504 1325407 - 1325424 + r 86 -12.7 -3.73068 | opp_overlap 1325407 CGCGCCCATAAAAAA GCCGGTC GATA GACCGGC TTGTTGCATTGCCAC AHA_1216 1326608 - 1325445 - | hypothetical protein AHA_1217 1326979 - 1326608 - | hypothetical protein AHA_1218 1328037 - 1326976 - | bactoprenol glucosyl transferase AHA_1219 1328639 - 1328094 - | hypothetical protein AHA_1220 1329063 - 1328953 - | hypothetical protein TERM 1505 1329098 - 1329121 + GH 71 -9.5 -3.59979 | opp_overlap 1329112, overlap 1329117 TACGCCGGCACGGCG GCCGGGCAG AAGGAG CTGCGCGGC TTTGCCGTCGAGGCG AHA_1221 1329044 - 1329736 + | amino acid ABC transporter periplasmic protein AHA_1222 1330001 - 1331302 + | cell wall degradation protein TERM 1506 1331340 - 1331323 - f 100 -14.1 -4.26188 | opp_overlap 1331323 GCCACAGAGTGAAAA GCCCGGC CTGC GCCGGGC TTTTTCATGGCCCCT TERM 1507 1331323 - 1331340 + F 100 -14.1 -4.7254 | opp_overlap 1331323 GCCACAGAGTGAAAA GCCCGGC CTGC GCCGGGC TTTTTCATGGCCCCT AHA_1223 1331453 - 1331998 + | M15 family non-peptidase protein AHA_1224 1332091 - 1332342 + | hypothetical protein TERM 1508 1332368 - 1332396 + T 100 -16.2 -3.06915 | opp_overlap 1332375, overlap 1332375 GCCCCGTTGCCCATA CAAAAAAGCGCC TGACC GGCGCTTTTTTG TTGGCTGCAATCCGT TERM 1509 1332389 - 1332375 - T 100 -8.5 -5.36441 | opp_overlap 1332368 1332375 TGCCCATACAAAAAA GCGCC TGACC GGCGC TTTTTTGTTGGCTGC TERM 1510 1332375 - 1332389 + T 100 -8.5 -5.4833 | opp_overlap 1332375, overlap 1332368 TGCCCATACAAAAAA GCGCC TGACC GGCGC TTTTTTGTTGGCTGC AHA_1225 1333051 - 1332437 - | hypothetical protein TERM 1511 1333181 - 1333149 - R 93 -9.2 -4.78149 | gap 1, opp_overlap 1333154, overlap 1333154 1333156 TTTATAATGCAAAAA TGA-AACGGGGCCCC CAAG GGAGCCCTGTTGTCA CTACCAACCGGCTCA TERM 1512 1333154 - 1333175 + r 70 -10.1 -3.35679 | gap 1, opp_overlap 1333149 1333154 1333156 AATGCAAAAATGAAA CGGGGC-CCC CAA GGGAGCCCTG TTGTCACTACCAACC TERM 1513 1333175 - 1333154 - R 84 -9.3 -4.34557 | opp_overlap 1333154, overlap 1333149 1333156 AATGCAAAAATGAAA CGGGGCCCC CAAG GGAGCCCTG TTGTCACTACCAACC cysZ 1333958 - 1333194 - | protein CysZ TERM 1514 1335946 - 1335999 + G 83 -14.6 -3.53012 | overlap 1335947 GGTGAACGTGAGCGG TTGCACACCGAGCAGGCCGCAG-GCC GGGA GGCGCTGC-GCCGGCTCGATGAGCAG TTTGCCGCCGCCAAC TERM 1515 1335947 - 1335998 + G 78 -15.9 -2.71712 | overlap 1335946 GTGAACGTGAGCGGT TGCACACCGAGCAGGCCGCAG-GCC GGGA GGCGCTGC-GCCGGCTCGATGAGCA GTTTGCCGCCGCCAA TERM 1516 1336377 - 1336344 - g 71 -13.2 -3.01712 | GCGGGCGCTGGAAGA GGCGCGCCTGC-GCCG GGAG CAGCAGCAGGC-CGCC TGCCAGCGACTGCAA TERM 1517 1336918 - 1336896 - g 72 -7.6 -4.1196 | overlap 1336887 1336874 AAGCTACCTGGAAAA CCAGTGCCAG GAT CTGGAACAGG CGCTGGAAACCTTGA smc 1334068 - 1337442 + | chromosome segregation protein SMC TERM 1518 1338406 - 1338420 + G 79 -11.4 -3.84451 | overlap 1338393 ATGCAGCTGCCGCTG CGCAGC AAC GCTGCG TTTGCCTTTGAGGAC zipA 1337458 - 1338570 + | cell division protein ZipA TERM 1519 1338620 - 1338599 - f 85 -4.3 -5.1963 | opp_overlap 1338600, overlap 1338600 TCTAATGAATAAAAA GTGCGGTAC CCAG GTGCCGCAT TTTTATTGGTCCGCT TERM 1520 1338600 - 1338619 + F 100 -10 -5.1356 | opp_overlap 1338599 1338600 CTAATGAATAAAAAG TGCGGTAC CCAG GTGCCGCA TTTTTATTGGTCCGC ligA 1338670 - 1340676 + | DNA ligase, NAD-dependent TERM 1521 1340727 - 1340699 - T 100 -21.9 -4.1347 | opp_overlap 1340699 1340703, overlap 1340703 CTTCAATCAGATAAA CAAAGAACCCGGC ATG GCCGGGTTCTTTG TTATGGGGGCACTGA TERM 1522 1340699 - 1340727 + T 100 -21.9 -3.29144 | opp_overlap 1340699 1340703, overlap 1340703 CTTCAATCAGATAAA CAAAGAACCCGGC ATG GCCGGGTTCTTTG TTATGGGGGCACTGA TERM 1523 1340723 - 1340703 - T 100 -16.9 -4.64952 | opp_overlap 1340699 1340703, overlap 1340699 AATCAGATAAACAAA GAACCCGGC ATG GCCGGGTTC TTTGTTATGGGGGCA TERM 1524 1340703 - 1340723 + T 100 -16.9 -4.30719 | opp_overlap 1340703 1340699, overlap 1340699 AATCAGATAAACAAA GAACCCGGC ATG GCCGGGTTC TTTGTTATGGGGGCA AHA_1230 1341727 - 1340750 - | ABC-type sugar transport system, ATPase component TERM 1525 1342049 - 1342079 + H 83 -8.2 -4.41348 | overlap 1342050 TGTTCCCTTCTCATC GTCAGCCCTGGCTT GTC AAGCCTCGGCTGAA TTTATTTGCGCCGAG TERM 1526 1342050 - 1342078 + H 78 -11.7 -3.24488 | overlap 1342049 GTTCCCTTCTCATCG TCAGCCCTGGCTT GTC AAGCCTCGGCTGA ATTTATTTGCGCCGA TERM 1527 1342136 - 1342150 + H 73 -5.6 -4.56597 | CAAGGGTAAGCCGAG GGCGAG AGC CTGGCC TTTTTAACGGGGAAA nrdD 1342170 - 1344287 + | anaerobic ribonucleoside triphosphate reductase nrdG 1344417 - 1344926 + | anaerobic ribonucleotide reductase-activating protein AHA_1233 1344964 - 1345161 + | hypothetical protein TERM 1528 1345183 - 1345202 + F 100 -13.6 -5.67967 | opp_overlap 1345183 GCCGCTTTGCCAAAA GCCAACCC GATG GGGTTGGC TTTTTTTATGCTGCT TERM 1529 1345202 - 1345183 - f 100 -13.6 -4.07568 | opp_overlap 1345183 GCCGCTTTGCCAAAA GCCAACCC GATG GGGTTGGC TTTTTTTATGCTGCT AHA_1234 1345306 - 1345698 + | hypothetical protein TERM 1530 1345729 - 1345699 - Tf 95 -15.4 -3.1886 | opp_overlap 1345700 1345702, overlap 1345702 1345706 ATTGAAGTGGAGTAA TGAGCAACCCCGGC CAG GCCGGGGTTGCTGT TTACTGCTGCTTGCA TERM 1531 1345700 - 1345728 + TF 100 -18.9 -3.82031 | opp_overlap 1345699 1345702 1345706, overlap 1345702 TTGAAGTGGAGTAAT GAGCAACCCCGGC CAG GCCGGGGTTGCTG TTTACTGCTGCTTGC TERM 1532 1345702 - 1345726 + TF 100 -21.5 -3.4914 | opp_overlap 1345699 1345702 1345706, overlap 1345700 GAAGTGGAGTAATGA GCAACCCCGGC CAG GCCGGGGTTGC TGTTTACTGCTGCTT TERM 1533 1345726 - 1345702 - Tf 100 -21.5 -2.79023 | opp_overlap 1345702 1345700, overlap 1345699 1345706 GAAGTGGAGTAATGA GCAACCCCGGC CAG GCCGGGGTTGC TGTTTACTGCTGCTT TERM 1534 1345722 - 1345706 - Tf 95 -15.1 -3.29096 | opp_overlap 1345702 1345700, overlap 1345702 1345699 TGGAGTAATGAGCAA CCCCGGC CAG GCCGGGG TTGCTGTTTACTGCT AHA_1235 1346089 - 1345730 - | hypothetical protein AHA_1236 1346978 - 1346217 - | amino acid ABC transporter, periplasmic amino acid-binding TERM 1535 1347085 - 1347062 - gR 100 -12.4 -5.53288 | CGGAAGGCAAAAAAA CGCCCCGGTA GGCA TAGCGGGGCG AAAGGCAGCACATCC AHA_1237 1346055 - 1347104 + | hypothetical protein AHA_1238 1348148 - 1347120 - | hypothetical protein AHA_1239 1349214 - 1348159 - | HlyD family secretion protein AHA_1240 1349696 - 1349229 - | MarR family transcriptional regulator TERM 1536 1349705 - 1349757 + H 90 -16.7 -2.79679 | opp_overlap 1349701, overlap 1349708 1349710 TCATCATGAGACTCT CCATTTACTTAGCTTGCTAAGCA TTGTAGT TGTTTAGCAGGCTAAGTAAATAG TGTGATCGCGATCTT TERM 1537 1349708 - 1349754 + H 90 -17 -2.66435 | opp_overlap 1349701, overlap 1349705 1349710 TCATGAGACTCTCCA TTTACTTAGCTTGCTAAGCA TTGTAGT TGTTTAGCAGGCTAAGTAAA TAGTGTGATCGCGAT AHA_1241 1350015 - 1350206 + | hypothetical protein AHA_1242 1350752 - 1352059 + | sodium:citrate symporter AHA_1243 1352086 - 1353621 + | malate dehydrogenase TERM 1538 1355155 - 1355176 + G 71 -13.1 -3.0127 | opp_overlap 1355143, overlap 1355160 AATGGCGCCGCACCG CCGAACAGA CGAC TCTGTTCGG TATCTACTTGAATAA AHA_1244 1353639 - 1355207 + | sensor kinase CitA, putative AHA_1245 1355211 - 1355903 + | transcriptional regulatory protein DpiA TERM 1539 1355928 - 1355966 + T 81 -11.9 -3.46982 | gap 1, opp_overlap 1355938 1355940, overlap 1355931 1355933 1355940 CGCACGCAGATCCAT GCCAACAAAAGAGGGAGC CTGA GCTCCCTTTTTTGT-GTC TGTTGTTGGTGTAAA TERM 1540 1355931 - 1355964 + T 87 -13.3 -3.30213 | opp_overlap 1355938 1355940, overlap 1355928 1355933 1355940 ACGCAGATCCATGCC AACAAAAGAGGGAGC CTGA GCTCCCTTTTTTGTG TCTGTTGTTGGTGTA TERM 1541 1355933 - 1355962 + T 100 -15.9 -3.2058 | opp_overlap 1355938 1355940, overlap 1355931 1355928 1355940 GCAGATCCATGCCAA CAAAAGAGGGAGC CTGA GCTCCCTTTTTTG TGTCTGTTGTTGGTG TERM 1542 1355957 - 1355938 - T 83 -7.8 -4.65916 | opp_overlap 1355933 1355931 1355928 1355940, overlap 1355940 TCCATGCCAACAAAA GAGGGAGC CTGA GCTCCCTT TTTTGTGTCTGTTGT TERM 1543 1355955 - 1355940 - T 83 -10.4 -3.94438 | opp_overlap 1355940 1355933 1355931 1355928, overlap 1355938 CATGCCAACAAAAGA GGGAGC CTGA GCTCCC TTTTTTGTGTCTGTT TERM 1544 1355940 - 1355955 + T 100 -10.4 -5.46276 | opp_overlap 1355938 1355940, overlap 1355933 1355931 1355928 CATGCCAACAAAAGA GGGAGC CTGA GCTCCC TTTTTTGTGTCTGTT AHA_1246 1356900 - 1356001 - | drug/metabolite exporter family protein TERM 1545 1356817 - 1356790 - G 72 -7.7 -4.11692 | CACCCAGCGGTAAAA TGAGATGGCGG CGGGAT CCACCACCCCA GCGGCGGCCTTGGCC AHA_1247 1356997 - 1357803 + | AraC family transcriptional regulator TERM 1546 1357846 - 1357829 - T 100 -14.1 -4.4959 | opp_overlap 1357829 TCTAAGCAATGAAAA GGGCGCC CGCA GGCGCCC TTGTTGATCACCGGA TERM 1547 1357829 - 1357846 + T 95 -14.1 -3.71848 | opp_overlap 1357829 TCTAAGCAATGAAAA GGGCGCC CGCA GGCGCCC TTGTTGATCACCGGA AHA_1248 1359429 - 1357867 - | aldehyde dehydrogenase TERM 1548 1359247 - 1359271 + g 72 -7.8 -4.11216 | opp_overlap 1359247, overlap 1359250 GGCCACTTCGCAGAA CACCTTGCCG TCCAC CGGCGAGATG TTTTCAAAGTAGCGG TERM 1549 1359510 - 1359499 - H 77 -4.4 -4.97402 | CAAAAGTTACAAAAA CGTT ATCA AACG GGATGTGGCAGCGTA TERM 1550 1359891 - 1359912 + G 100 -5.8 -5.40072 | overlap 1359893 AGCGGTGACGACGGC TTCGCTCG CCACGC CGAGCGCA TTTTTTTGCGCAGCG TERM 1551 1360189 - 1360175 - g 73 -8.5 -4.10161 | overlap 1360176 CATGACCCTGGAAAA CGCGC TGCTG GCGCG CCAGCCGGGCTGGCT AHA_1249 1359621 - 1361297 + | acetoin catabolism regulatory protein TERM 1552 1362155 - 1362169 + G 71 -11.4 -3.40403 | ATCGCCTGGGGGGCG CTCGGC GCC GCCGAG TTCTGCTGGCACGCC TERM 1553 1362294 - 1362267 - g 78 -14.2 -3.03159 | TCAAGCTGGCCAACA TGCAGACCGAGA TTGC CCTCGGCCTGCA GGGCTGCCTGCAGGC AHA_1250 1361384 - 1362559 + | glutaryl-CoA dehydrogenase TERM 1554 1362603 - 1362628 + G 81 -16.1 -2.72991 | GGATCTCAGCCGCGT GCTGGCCGGCC CCTG GGCCAGCCAGC TGCTTGCCGATCTCG AHA_1251 1362559 - 1363713 + | caib/baif family protein AHA_1252 1363753 - 1364250 + | lactoylglutathione lyase phoB 1364353 - 1365042 + | phosphate regulon transcriptional regulatory protein PhoB TERM 1555 1365430 - 1365445 + G 81 -10.4 -4.18018 | GGTGCAACCGGCTGG CCGAGC AGCT GCTCGG TTTTCGCTGGCCGGA phoR 1365051 - 1366346 + | phosphate regulon sensor protein PhoR TERM 1556 1366370 - 1366403 + F 80 -8.9 -4.15044 | opp_overlap 1366376 1366378, overlap 1366378 GGCAAGGGGTTGGCA TCAAAAGAGGGCGGC GATG GCGGCCCTTTTTTCA TTTGTTAAACAAGCC TERM 1557 1366397 - 1366376 - f 71 -5.7 -4.25104 | opp_overlap 1366370 1366378, overlap 1366378 GGGTTGGCATCAAAA GAGGGCGGC GATG GCGGCCCTT TTTTCATTTGTTAAA TERM 1558 1366378 - 1366395 + F 100 -8.3 -5.46129 | opp_overlap 1366376 1366378, overlap 1366370 GTTGGCATCAAAAGA GGGCGGC GATG GCGGCCC TTTTTTCATTTGTTA TERM 1559 1366835 - 1366812 - g 74 -2.3 -4.82901 | CGGTGTGGATAAAAA CCTGCCGGA TTACAC TCCGACCAG CGGCATCTCGGGCAA AHA_1255 1366723 - 1367697 + | phosphate-binding protein TERM 1560 1367717 - 1367734 + F 100 -14.1 -5.42198 | GTTTCCTTTGCCAGA CGGGCCC TGCG GGGCCCG TTTTGTTTTTTGGCC TERM 1561 1368257 - 1368214 - g 75 -11.6 -3.62522 | overlap 1368217 CAAGGTGGCCAAGAA CCAGGATCAGCTCGCCACCG TCAT CGGCCACGAGCTGACCCACG TGCTGGCCCAGCACT TERM 1562 1368254 - 1368217 - g 83 -16.3 -2.93073 | overlap 1368214 GGTGGCCAAGAACCA GGATCAGCTCGCCACCG TCAT CGGCCACGAGCTGACCC ACGTGCTGGCCCAGC AHA_1256 1367861 - 1368667 + | M48 family peptidase AHA_1257 1368655 - 1369161 + | GCN5-related N-acetyltransferase TERM 1563 1370129 - 1370158 + G 77 -13.5 -3.26546 | gap 1, overlap 1370145 1370148 CGCGAGGCCCGCTTC GGCGGCGCCG-GCG GGG TGCGCGGGGCCGCC TTGCTCAATTTATGA AHA_1258 1369271 - 1370173 + | ROK family protein AHA_1259 1370216 - 1370941 + | copper homeostasis protein CutC AHA_1260 1370950 - 1371069 + | hypothetical protein TERM 1564 1371133 - 1371103 - f 100 -19.1 -3.77206 | opp_overlap 1371099 1371108, overlap 1371108 GATAATCCTACGAAA CAGAAGGACGCCG CATGT CGGCGCCCTTCTG CCAGCTTGTGTGAAC TERM 1565 1371108 - 1371128 + F 70 -9.6 -3.31799 | opp_overlap 1371108 1371103, overlap 1371099 TCCTACGAAACAGAA GGACGCCG CATGT CGGCGCCC TTCTGCCAGCTTGTG TERM 1566 1371128 - 1371108 - f 86 -11.8 -3.86252 | opp_overlap 1371099 1371108, overlap 1371103 TCCTACGAAACAGAA GGACGCCG CATGT CGGCGCCC TTCTGCCAGCTTGTG fklB 1371255 - 1371866 + | FKBP-type peptidyl-prolyl cis-trans isomerase FklB TERM 1567 1371887 - 1371914 + F 100 -19.2 -5.40072 | opp_overlap 1371889 1371891 CTGGCTTGATTGATA CAGACGGCGGCC CTCG GGTCGCCGTCTG TTTTTTTGCGCCACG TERM 1568 1371912 - 1371889 - f 81 -13.8 -2.91264 | opp_overlap 1371887, overlap 1371891 GGCTTGATTGATACA GACGGCGGCC CTCG GGTCGCCGTC TGTTTTTTTGCGCCA TERM 1569 1371929 - 1371957 + F 81 -8 -4.24948 | gap 1 GTTTTTTTGCGCCAC GCGC-GGCGGGGC ATGG GCAGCGCCTGCGC TTTTGGATATAGTCA TERM 1570 1372311 - 1372352 + G 74 -9.6 -3.91897 | gap 3 CTCTACCCGGCCCCC TTGCCCC-AGGC-C-CAGCTC ATC GAGCTGTGCGCCTTGGGGGAA TTTATCGATCGGGAC TERM 1571 1372636 - 1372648 + G 72 -7.7 -4.13282 | ATACCCCGGTCGCCC TGCTG GCC CAGCA TTTTGACGGTGTGCT AHA_1262 1371996 - 1372877 + | ABC transporter, ATP-binding protein TERM 1572 1373496 - 1373508 + G 76 -9.1 -4.03234 | GCGGGCCACCCCGCT CTCGG CCG CCGAG TTTCTCTGCGCCCAG AHA_1263 1372951 - 1373964 + | ABC transporter permease protein TERM 1573 1373983 - 1374003 + G 70 -11.8 -3.12327 | overlap 1373981 CACTACCGCTGGTTG GCGGGGCC CTGCT GGCCCTGC TGTTGAGTCTGCCGG AHA_1264 1373961 - 1374275 + | hypothetical protein TERM 1574 1374286 - 1374257 - T 84 -9.2 -4.24204 | gap 1, overlap 1374258 CACCGATATCGAAAA CGGCCCGCGCGGC GAGTA GCCG-GCGGGCAA AGACGTGCATGAACG AHA_1265 1374694 - 1374332 - | hypothetical protein AHA_1266 1374736 - 1375239 + | nudix hydrolase 3 TERM 1575 1375255 - 1375285 + T 100 -24.2 -3.53012 | opp_overlap 1375255 1375260, overlap 1375260 CGCGCACCCTGCAAA CAAAACGGGCAGCC ACT GGCTGCCCGTTTTG TTTCGGGGCGGGGGA TERM 1576 1375285 - 1375255 - T 100 -24.2 -3.55444 | opp_overlap 1375255 1375260, overlap 1375260 CGCGCACCCTGCAAA CAAAACGGGCAGCC ACT GGCTGCCCGTTTTG TTTCGGGGCGGGGGA TERM 1577 1375260 - 1375280 + T 100 -18.3 -4.86731 | opp_overlap 1375255 1375260, overlap 1375255 ACCCTGCAAACAAAA CGGGCAGCC ACT GGCTGCCCG TTTTGTTTCGGGGCG TERM 1578 1375280 - 1375260 - T 100 -18.3 -4.87133 | opp_overlap 1375260 1375255, overlap 1375255 ACCCTGCAAACAAAA CGGGCAGCC ACT GGCTGCCCG TTTTGTTTCGGGGCG AHA_1267 1376229 - 1375303 - | putative phenylacetate-CoA ligase AHA_1268 1376356 - 1376829 + | peroxiredoxin TERM 1579 1376834 - 1376848 + F 74 -2.8 -4.87291 | opp_overlap 1376834 CGGCGCTGTAAAATA TCAATC GTC GTTTGA TTTTTCCTTGAAATG TERM 1580 1376895 - 1376927 + F 86 -12.8 -3.73775 | gap 1, opp_overlap 1376901, overlap 1376896 1376901 CACTGGGCCCACTTC TGCAAAGAGCCGGGC CATC GCCTGGCTCTT-GCG TTTGCTGGCGATGGA TERM 1581 1376896 - 1376926 + F 83 -14.1 -2.84051 | gap 1, opp_overlap 1376901, overlap 1376895 1376901 ACTGGGCCCACTTCT GCAAAGAGCCGGGC CATC GCCTGGCTCTT-GC GTTTGCTGGCGATGG TERM 1582 1376901 - 1376922 + F 87 -13.7 -3.30701 | opp_overlap 1376901, overlap 1376896 1376895 GCCCACTTCTGCAAA GAGCCGGGC CATC GCCTGGCTC TTGCGTTTGCTGGCG TERM 1583 1376922 - 1376901 - f 77 -11.5 -3.54424 | opp_overlap 1376901 1376896 1376895 GCCCACTTCTGCAAA GAGCCGGGC CATC GCCTGGCTC TTGCGTTTGCTGGCG TERM 1584 1377891 - 1377913 + G 70 -7.6 -4.05322 | GCTTCGTGGGCTACA CCGGCTGGTT GCT GGCCAGCCAG TTTATCTAGCCGTTT AHA_1269 1376954 - 1377922 + | putative K+-dependent Na+/Ca+ exchanger-like protein TERM 1585 1377947 - 1377970 + T 100 -16.8 -3.85509 | opp_overlap 1377947 CTGGATGAAACGAAA GAGGGGAAGC CGCG GCTTCCCCTC TTTGCATTCTGTTGA TERM 1586 1377970 - 1377947 - T 100 -16.8 -4.10552 | opp_overlap 1377947 CTGGATGAAACGAAA GAGGGGAAGC CGCG GCTTCCCCTC TTTGCATTCTGTTGA AHA_1270 1379143 - 1377992 - | ornithine decarboxylase TERM 1587 1379493 - 1379476 - H 91 -2.5 -5.75342 | overlap 1379478 CGGTGCGAAAAAAAA CGGCGGC CGGG GTGGCCG AGTGGGAGACAGCTC TERM 1588 1379495 - 1379512 + H 76 -5.5 -4.74504 | GGCCGGGGTGGCCGA GTGGGAG ACAG CTCACAC TTTTTGGATTACCAT agcS-1 1379859 - 1381235 + | amino acid carrier protein TERM 1589 1381260 - 1381285 + T 95 -11.9 -4.41844 | opp_overlap 1381263, overlap 1381249 1381263 CATCCATCCAAACGA AAAGCCACGAC CCGG GTCGTGGCTTG TTTTATGGGCATTTT TERM 1590 1381263 - 1381282 + T 100 -13.6 -4.31397 | opp_overlap 1381263, overlap 1381260 1381249 CCATCCAAACGAAAA GCCACGAC CCGG GTCGTGGC TTGTTTTATGGGCAT TERM 1591 1381282 - 1381263 - T 100 -13.6 -4.56914 | opp_overlap 1381263 1381260 1381249 CCATCCAAACGAAAA GCCACGAC CCGG GTCGTGGC TTGTTTTATGGGCAT AHA_1272 1382046 - 1381345 - | protein ligase TERM 1592 1382106 - 1382122 + r 95 -15.1 -3.72893 | opp_overlap 1382106 AGCGAAGGAGGTAAA GCCCCGC ATG GCGGGGC TTTGGTGCAAGGATG TERM 1593 1382122 - 1382106 - R 95 -15.1 -3.71794 | opp_overlap 1382106 AGCGAAGGAGGTAAA GCCCCGC ATG GCGGGGC TTTGGTGCAAGGATG yicE 1383543 - 1382146 - | xanthine permease AHA_1274 1383790 - 1384929 + | response regulator PleD (Stalked cell differentiation-controllingprotein) TERM 1594 1384939 - 1384918 - T 93 -15.9 -3.05022 | opp_overlap 1384918, overlap 1384920 GCCGCCATACAGACA GATGCCGCC TGAG GGCGGCATC TTGCTTGCGCTGGGT TERM 1595 1384918 - 1384939 + T 100 -15.9 -3.35992 | opp_overlap 1384918 1384920 GCCGCCATACAGACA GATGCCGCC TGAG GGCGGCATC TTGCTTGCGCTGGGT TERM 1596 1384937 - 1384920 - T 81 -12.7 -3.08197 | opp_overlap 1384918, overlap 1384918 CGCCATACAGACAGA TGCCGCC TGAG GGCGGCA TCTTGCTTGCGCTGG AHA_1275 1385212 - 1384964 - | hypothetical protein AHA_1276 1386742 - 1385363 - | mate efflux family protein AHA_1277 1386914 - 1387720 + | helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisation AHA_1278 1387717 - 1389483 + | malate dehydrogenase TERM 1597 1389510 - 1389527 + T 100 -11.3 -5.28176 | opp_overlap 1389505 1389510 AGGCGCAAAGCAAAA GGGATGC CTCG GCATCCC TTTTTTGTGCATCGC TERM 1598 1389527 - 1389510 - T 95 -11.3 -4.55128 | opp_overlap 1389510, overlap 1389505 AGGCGCAAAGCAAAA GGGATGC CTCG GCATCCC TTTTTTGTGCATCGC AHA_1279 1390679 - 1389624 - | major outer membrane protein OmpAII TERM 1599 1390853 - 1390870 + r 95 -12.7 -4.07568 | opp_overlap 1390853 CCAGGCAATAAAAAA GGAGGCC GGAT GGCCTCC TTTTCGGCCACCAAG TERM 1600 1390870 - 1390853 - R 100 -12.7 -5.4833 | opp_overlap 1390853 CCAGGCAATAAAAAA GGAGGCC GGAT GGCCTCC TTTTCGGCCACCAAG AHA_1280 1391892 - 1390891 - | major outer membrane protein OmpAII TERM 1601 1392301 - 1392272 - R 100 -13.7 -4.03234 | opp_overlap 1392277, overlap 1392277 TGGCGGGGAGACAAA CAAAAGGGGATGC CGTG GCATCCCCTTTTC GCATCATCTGAACGG TERM 1602 1392277 - 1392296 + r 100 -13.6 -4.16279 | opp_overlap 1392272 1392277 GGGAGACAAACAAAA GGGGATGC CGTG GCATCCCC TTTTCGCATCATCTG TERM 1603 1392296 - 1392277 - R 100 -13.6 -5.05113 | opp_overlap 1392277, overlap 1392272 GGGAGACAAACAAAA GGGGATGC CGTG GCATCCCC TTTTCGCATCATCTG AHA_1281 1393358 - 1392324 - | major outer membrane protein TERM 1604 1393057 - 1393038 - G 70 -10 -3.55368 | gap 1, overlap 1393029 AGCGAAGGCAGAGAA GTC-GCCGC CCA GCGGCAGAC GAGCGATACCGGACA TERM 1605 1393393 - 1393403 + r 86 -6.8 -5.07011 | overlap 1393373 TGGCACGTTGTTCAC GTGC TTC GCAC TTTTTAATTTATGTA AHA_1282 1394263 - 1393667 - | hypothetical protein TERM 1606 1393922 - 1393908 - G 82 -5.6 -4.87626 | overlap 1393909 GCTGAACAGCAAAAA TGCAGG TGG CCTGCT TCGAGCCAGTCGGCC TERM 1607 1394503 - 1394487 - H 75 -3.6 -4.85782 | overlap 1394498 GTCGCGAAAAATAAA GGTGGA GTCAA TCCGCC GTACGGAGTATGGAA AHA_1283 1394522 - 1394788 + | transcriptional protein TERM 1608 1394811 - 1394829 + F 100 -11.7 -5.28176 | opp_overlap 1394811 GAGCTTTGACAAAAA TGCCGCC ATCGA GGCGGCA TTTTTTATCCATCAA TERM 1609 1394829 - 1394811 - f 100 -11.7 -4.83615 | opp_overlap 1394811 GAGCTTTGACAAAAA TGCCGCC ATCGA GGCGGCA TTTTTTATCCATCAA AHA_1284 1394993 - 1396354 + | sodium-dependent symporter family protein TERM 1610 1396407 - 1396390 - T 100 -12.7 -4.34402 | opp_overlap 1396390 GTTCCCACAGCAAAA GAGCGCC GCAA GGCGCTC TTTTTGTTGGGGAGG TERM 1611 1396390 - 1396407 + T 100 -12.7 -5.06414 | opp_overlap 1396390 GTTCCCACAGCAAAA GAGCGCC GCAA GGCGCTC TTTTTGTTGGGGAGG AHA_1285 1397308 - 1396442 - | alpha/beta fold family hydrolase AHA_1286 1398895 - 1397342 - | sensor histidine kinase AHA_1287 1399092 - 1400153 + | HlyD family secretion protein AHA_1288 1400153 - 1403272 + | AcrB/AcrD/AcrF family protein TERM 1612 1403418 - 1403390 - g 70 -11.7 -3.18912 | opp_overlap 1403390 1403413 TCAGCCATTTATGAA CCGCTGCCCTT TGCCTAT ATGGGCAGCGG TTTGCTGTTGTTGGG TERM 1613 1403390 - 1403418 + G 83 -11.7 -4.01135 | opp_overlap 1403390, overlap 1403413 TCAGCCATTTATGAA CCGCTGCCCTT TGCCTAT ATGGGCAGCGG TTTGCTGTTGTTGGG AHA_1289 1403366 - 1403734 + | hypothetical protein TERM 1614 1403760 - 1403780 + F 100 -14 -4.27259 | opp_overlap 1403747 AACCCGCACTTTTCA GGCGAGCC CCGCT GGCTCGCC TTTTCCGTATCTATC AHA_1290 1403872 - 1406280 + | radical SAM domain-containing protein TERM 1615 1406316 - 1406333 + T 100 -12.7 -4.72272 | opp_overlap 1406316 ATAGAAATAAAAAAA GGCGACC GGAT GGTCGCC TTTTTAATAGCCAAC TERM 1616 1406333 - 1406316 - T 100 -12.7 -6.04953 | opp_overlap 1406316 ATAGAAATAAAAAAA GGCGACC GGAT GGTCGCC TTTTTAATAGCCAAC TERM 1617 1406549 - 1406567 + T 95 -14.6 -3.33671 | opp_overlap 1406547 1406545 AATGTCACTAATACT TGAGGGGC AAT GCCCCTCA TTCTAGAATCCATAT AHA_1291 1407529 - 1406570 - | hypothetical protein AHA_1292 1408483 - 1407548 - | hypothetical protein AHA_1293 1408883 - 1409230 + | hypothetical protein AHA_1294 1410272 - 1409232 - | AraC/XylS family transcriptional regulator TERM 1618 1410195 - 1410171 - G 72 -2.6 -4.79223 | overlap 1410173 GCACAGCAGCAAAAA GAGGGCGGTC GTTCT GGCCGCCCGG CCGAGGCGCGCCAGC TERM 1619 1410193 - 1410173 - G 76 -9.6 -4.01045 | overlap 1410171 ACAGCAGCAAAAAGA GGGCGGTC GTTCT GGCCGCCC GGCCGAGGCGCGCCA AHA_1295 1410464 - 1410805 + | inner membrane protein YhaI AHA_1296 1410802 - 1411284 + | hypothetical protein AHA_1297 1411773 - 1411339 - | hypothetical protein AHA_1298 1411303 - 1411725 + | hypothetical protein AHA_1299 1412303 - 1411770 - | DinB family protein AHA_1300 1412491 - 1413399 + | Gfo/Idh/MocA family oxidoreductase ruvC 1413664 - 1414185 + | crossover junction endodeoxyribonuclease RuvC TERM 1620 1414559 - 1414588 + G 75 -12.1 -3.54424 | gap 1 TGGCTGGTGCTGGGG GGCTGCGGC-AGCG CCG TGCTGGCCGCCGCC TTTCCGAACGTCGGC TERM 1621 1414965 - 1414981 + G 71 -9.3 -3.74693 | TGGGCGCCACCGATA GCCGGGC CCC GGCCGGC TTTGCTCCCATCGCC AHA_1302 1414508 - 1415194 + | aquaporin Z TERM 1622 1415224 - 1415239 + T 100 -10.4 -5.42514 | opp_overlap 1415212 AAAGTGTGGTATCGA CACGCC CCCG GGCGTG TTTTTTCGTTTCTGG TERM 1623 1415283 - 1415267 - T 93 -10.8 -4.4078 | opp_overlap 1415265 1415262 TGGCGGGAACGAAAA CGGGCC ACAAG GGCCCG GCTGCTTGCGTTGCT AHA_1303 1416061 - 1415318 - | transglycosylase SLT domain-containing protein TERM 1624 1415827 - 1415846 + g 75 -3.4 -4.82901 | overlap 1415797 GCTCCGGCATCATGT CGGAGTAG CGCA CCACACCG TTTTTCTGCACCGAC TERM 1625 1416222 - 1416201 - R 100 -17.3 -4.55209 | opp_overlap 1416205 GACAGACCAAATAAA GAGGCCGCC CGGT GGCGGCCTC GCGCGGCAATGGCCG AHA_1304 1417601 - 1416240 - | alpha-amylase TERM 1626 1417708 - 1417721 + r 83 -8.1 -4.39002 | opp_overlap 1417708 CTGTCTTGCCAGCAA TCGCC GGGC GGCGA TTTTGTGAGCACTTT TERM 1627 1417790 - 1417776 - R 76 -2.7 -5.00884 | opp_overlap 1417777 1417789, overlap 1417741 1417777 ACGGCTTGCAAAAAA CCGCG CAGGC CGCGT CATTACTGACTTTTC AHA_1305 1418995 - 1417832 - | protease LasA TERM 1628 1419633 - 1419644 + G 71 -5.8 -4.371 | CGAACAGGATTACTA CCAC CTGT GTGG TTTTCGTCTGCTGCC AHA_1306 1419424 - 1419903 + | acetyltransferase AHA_1307 1420516 - 1419908 - | hypothetical protein TERM 1629 1420015 - 1420034 + g 79 -9.2 -4.22652 | opp_overlap 1420015, overlap 1420016 CGTTGAGCCGATAGA CCGGCTGG GTCT CCAGCCGC TTTTCCATGCTCTGC TERM 1630 1420016 - 1420033 + g 73 -12.7 -3.13109 | opp_overlap 1420015, overlap 1420015 GTTGAGCCGATAGAC CGGCTGG GTCT CCAGCCG CTTTTCCATGCTCTG TERM 1631 1420328 - 1420339 + g 71 -5.8 -4.2528 | overlap 1420322 CTTGATGATGCCGGG CAGC TCCA GCTG TTTGTTCACTTGCAC TERM 1632 1420711 - 1420732 + G 75 -4.4 -4.70266 | gap 1, overlap 1420711 1420714 TCGCCCTCATCTATG CC-ATCCCG TTTGC CGGGGTCGG TTTTTACGTGCTGTT cls 1420548 - 1422029 + | cardiolipin synthetase AHA_1309 1422125 - 1423387 + | putative lipoprotein TERM 1633 1423411 - 1423440 + T 100 -19.5 -4.18018 | opp_overlap 1423411 1423414 1423418, overlap 1423414 1423418 GCTTTAGTGCACATA CAACAAAGGCTCC CGTG GGAGCCTTTGTTG TTTTCAGTGGCCGGG TERM 1634 1423440 - 1423411 - T 100 -19.5 -2.89564 | opp_overlap 1423411 1423414 1423418, overlap 1423414 1423418 GCTTTAGTGCACATA CAACAAAGGCTCC CGTG GGAGCCTTTGTTG TTTTCAGTGGCCGGG TERM 1635 1423437 - 1423414 - T 95 -15.4 -3.59698 | opp_overlap 1423414 1423411 1423418, overlap 1423411 1423418 TTAGTGCACATACAA CAAAGGCTCC CGTG GGAGCCTTTG TTGTTTTCAGTGGCC TERM 1636 1423414 - 1423437 + T 100 -15.4 -4.21812 | opp_overlap 1423411 1423414 1423418, overlap 1423411 1423418 TTAGTGCACATACAA CAAAGGCTCC CGTG GGAGCCTTTG TTGTTTTCAGTGGCC TERM 1637 1423418 - 1423433 + T 100 -10.4 -4.68601 | opp_overlap 1423414 1423411 1423418, overlap 1423414 1423411 TGCACATACAACAAA GGCTCC CGTG GGAGCC TTTGTTGTTTTCAGT TERM 1638 1423433 - 1423418 - T 93 -10.4 -4.42974 | opp_overlap 1423418 1423414 1423411, overlap 1423414 1423411 TGCACATACAACAAA GGCTCC CGTG GGAGCC TTTGTTGTTTTCAGT purU 1424293 - 1423457 - | formyltetrahydrofolate deformylase TERM 1639 1424333 - 1424347 + H 91 -7.8 -5.0133 | overlap 1424334 GTTGGCGCCTGAGTC TGCGCA GGC TGCGCG TTTTTTCAGGCACTA ribB 1424752 - 1425405 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 1640 1425887 - 1425904 + T 100 -11.3 -5.81412 | opp_overlap 1425887 ATCCATGCGAAAAAA TGGCGCA GTTA TGCGCCA TTTTTTTTGCCTGAA TERM 1641 1425904 - 1425887 - T 100 -11.3 -5.05782 | opp_overlap 1425887 ATCCATGCGAAAAAA TGGCGCA GTTA TGCGCCA TTTTTTTTGCCTGAA TERM 1642 1425962 - 1425993 + T 74 -2.8 -4.8622 | opp_overlap 1425965, overlap 1425964 CTGATGCTCGCCTGA CAAGGCAATGCCGA TCAC TCGGCATCACCCCG TTTTTCATTCCCGCA TERM 1643 1425990 - 1425965 - T 78 -11.9 -3.28791 | opp_overlap 1425964 1425962 ATGCTCGCCTGACAA GGCAATGCCGA TCAC TCGGCATCACC CCGTTTTTCATTCCC AHA_1312 1426861 - 1426013 - | thioredoxin domain-containing protein AHA_1313 1427580 - 1426858 - | 4'-phosphopantetheinyltransferase family protein TERM 1644 1427238 - 1427207 - G 80 -5.1 -4.82901 | gap 1, overlap 1427208 CTCTGCGCATAAAAA CGGCG-GGCCAG TGGCAGAGT CTGGCGGCGCCG CTGACCCATCTCTAT AHA_1314 1427844 - 1428344 + | NlpC TERM 1645 1428367 - 1428378 + F 71 -4.4 -4.58395 | overlap 1428349 TGGACAAACGGCTCG CAGT ACGG ACTG TTTTTCCAACCTCAC TERM 1646 1428399 - 1428416 + F 100 -12.7 -5.252 | CCAACCTCACTTGAA CCGGGCT CGAC AGCCCGG TTTTTTATGGCCGTC AHA_1315 1428493 - 1429449 + | putative SAM-dependent methyltransferase TERM 1647 1429472 - 1429500 + F 100 -19.7 -5.00616 | opp_overlap 1429475 GAAGCGGGACGACGA CAAGGGGCATGCC GAT GGTATGCCCCTTG TTTTTTGGGGAGCGC TERM 1648 1429497 - 1429475 - f 88 -13.4 -3.44051 | opp_overlap 1429472 GCGGGACGACGACAA GGGGCATGCC GAT GGTATGCCCC TTGTTTTTTGGGGAG AHA_1316 1429721 - 1430440 + | nodulation protein N TERM 1649 1430507 - 1430486 - T 100 -14.5 -5.47218 | opp_overlap 1430486 TCGTATTGAAAAAAA CAGGCTCAC CTCG GTGAGCCTG TTTTTTTATGGCGTT TERM 1650 1430486 - 1430507 + T 100 -14.5 -5.63504 | opp_overlap 1430486 TCGTATTGAAAAAAA CAGGCTCAC CTCG GTGAGCCTG TTTTTTTATGGCGTT AHA_1317 1431586 - 1430588 - | hypothetical protein TERM 1651 1431331 - 1431373 + g 76 -10.6 -3.90286 | gap 1 AGGCTTTCTGGTCAT CCGG-CGTCAGGGCCAGCA GGGTAA TGCCGGTCTTGACGGTCGG TTTGGGTTTGTCCTG AHA_1318 1432531 - 1431614 - | LysM domain-containing protein TERM 1652 1431792 - 1431813 + g 78 -10.1 -4.08945 | overlap 1431809 ACCTCCAGCCAGTGA CGGCCATCG GGCT CGATGGCGG TTTTGACCGGCTGGT TERM 1653 1432003 - 1432049 + g 71 -5.8 -4.25104 | gap 2 TGGCGAACTTGCCGA GGGGATTGTCGGGACCGGGCGG CACCA CCGC-CGG-CAGGGTGATCCCC TTTTGCTCCAGCCAG TERM 1654 1432289 - 1432300 + g 76 -7.2 -4.2828 | GGTTGGCAGGGTCAG CCGG GTGC CCGG TTTTGGTAAATAGGG TERM 1655 1432860 - 1432821 - R 71 -11.4 -2.90194 | gap 1 AGTGCTGCAACGACA GCAGGCACGACGGCGGAGA ACA TCT-CGCCACCGGGCATGC GCTCATCTGCTGGTT TERM 1656 1433050 - 1433074 + r 100 -15.8 -5.18355 | TCCGCCATCTTCAAG GCCCAAGCTG CCAGC CAGCTTGGGC TTTTTCGTTTTTGCG TERM 1657 1433118 - 1433136 + r 74 -10.2 -3.49102 | overlap 1433132 CACCCCGTATTCCAT GCCAGTGG ATC CCCCTGGC TTATCTGGCCAGTGT AHA_1320 1436307 - 1433179 - | putative transporter AmrB TERM 1658 1433891 - 1433876 - G 71 -4.6 -4.39386 | GGGAAACCATCAAAA CGCATC ATCT GTTGCG GTGATTCCCGCCAGA AHA_1321 1437678 - 1436323 - | acriflavin resistance protein A AHA_1322 1437636 - 1438364 + | two-component response regulator TERM 1659 1439062 - 1439075 + G 76 -8.1 -4.21343 | CACTCTCAAGCGGGA GCTCG ATGC CGAGC TTTGTGTCTGTTGCG AHA_1323 1438361 - 1439419 + | sensor histidine kinase TERM 1660 1439559 - 1439527 - T 81 -12 -3.52849 | opp_overlap 1439530, overlap 1439525 1439530 CAACGAGATCAAATA TCAGGCCCAAGCTG CTAGC CAGCTTGGGCCTTT CTCTATTTGCACGCT TERM 1661 1439530 - 1439556 + T 100 -18.1 -4.27886 | opp_overlap 1439527 1439525 1439530 CGAGATCAAATATCA GGCCCAAGCTG CTAGC CAGCTTGGGCC TTTCTCTATTTGCAC TERM 1662 1439556 - 1439530 - T 95 -18.1 -2.88959 | opp_overlap 1439530, overlap 1439527 1439525 CGAGATCAAATATCA GGCCCAAGCTG CTAGC CAGCTTGGGCC TTTCTCTATTTGCAC AHA_1324 1439998 - 1439669 - | quaternary ammonium compound-resistance protein QacE AHA_1325 1440430 - 1440017 - | quaternary ammonium compound-resistance protein QacE AHA_1326 1441142 - 1440450 - | hypothetical protein TERM 1663 1440511 - 1440496 - G 78 -3.2 -5.00616 | overlap 1440497 CTGCTTTTCAAAAAA TCGATG GCGG CATCGG TCAGCTGGGCCTCGG TERM 1664 1440609 - 1440577 - G 71 -11.2 -3.49475 | gap 1, opp_overlap 1440577 1440592 CTGACCGTGAGATAA CGCCGCGCC-GTGCC CGCC GGCACCGGGGCCGCG TCGTTCGCCGGTGCC TERM 1665 1440592 - 1440627 + g 86 -13.2 -4.08216 | gap 1, opp_overlap 1440577, overlap 1440577 CGCCGCGCCGTGCCC GCCGGCACCGG-GGCCG CGT CGTTCGCCGGTGCCAGC TTTTCCAGCAGCTCA AHA_1327 1441774 - 1441154 - | propanediol utilization TERM 1666 1441300 - 1441340 + g 76 -13.9 -3.21276 | overlap 1441298 CGCCGTCGCTGCGCA CGCTCACCTTCTGACCGTG GGT CACGTTCAGCTGGCGAGCG TCTTGTGGCGAGAGG AHA_1328 1442223 - 1441771 - | hypothetical protein AHA_1329 1443222 - 1442236 - | benzylsuccinate synthase activating enzyme AHA_1330 1445678 - 1443297 - | pyruvate formate-lyase AHA_1331 1447863 - 1446709 - | alcohol dehydrogenase, iron-containing TERM 1667 1447530 - 1447511 - G 74 -10.6 -3.73775 | opp_overlap 1447516 1447521, overlap 1447513 GGGATGGCCACGAAA CAGGGGCG CTCG CGCCCCAG ATGCGGGCGGGTTTG TERM 1668 1447528 - 1447513 - G 74 -11.8 -3.45324 | opp_overlap 1447516 1447521, overlap 1447511 GATGGCCACGAAACA GGGGCG CTCG CGCCCC AGATGCGGGCGGGTT AHA_1332 1448136 - 1447879 - | ethanolamine utilization protein EutN/carboxysome structural protein Ccml eutE 1449728 - 1448163 - | acetaldehyde dehydrogenase (acetylating) TERM 1669 1448287 - 1448257 - G 76 -9.7 -4.07568 | gap 2 CTGGCGCCGGCAAAA CGGTCGTCGGCACTG TGG CAG-GCCGGCG-CCG GGGCACTGAAGCGGG TERM 1670 1448562 - 1448573 + g 83 -7.2 -4.58395 | GGTGTTGATCAGGAT CCGG TTGA CCGG TTTTTCCAGGCTGAA TERM 1671 1449097 - 1449078 - G 76 -10.6 -3.85698 | GCTGCGCTCGATAAA GGCCGGGC CGTT GCCCGGGC CGCCACTGATGGTCG TERM 1672 1449787 - 1449809 + r 70 -9.8 -3.40403 | opp_overlap 1449779 AAAAAGTGCGGACGG GGCGTGCCCT CTC AGGTCATGCC TTGTGCTGCGCCGCG AHA_1334 1450081 - 1449803 - | ethanolamine utilization protein TERM 1673 1450046 - 1450072 + g 70 -7.3 -4.04413 | overlap 1450037 GATGCAGGCCACCAG GCCTTTGGTCT CAATC AGACCAAGCGC TTCTTTCATCATGTT AHA_1335 1450380 - 1450096 - | microcompartments family protein AHA_1336 1450675 - 1450397 - | microcompartments family protein AHA_1337 1451911 - 1451360 - | hypothetical protein AHA_1338 1452684 - 1451875 - | transcriptional regulatory protein, C terminal TERM 1674 1452589 - 1452574 - GR 100 -4.6 -5.55001 | CAAGAAAAAATAAAA CAGCGC ATTG GCGGTG ATGGATAATTGGCTG AHA_1339 1453311 - 1452706 - | TetR family transcriptional regulator AHA_1340 1454607 - 1453693 - | LysR family transcriptional regulator TERM 1675 1454728 - 1454738 + G 74 -5.4 -4.56775 | CTCTCTAAACTTGAA TGCA GTT TGCA TTTTTAGGCCAACCT fdhD-1 1454723 - 1455553 + | formate dehydrogenase family accessory protein FdhD TERM 1676 1455559 - 1455574 + G 86 -7.5 -4.7497 | opp_overlap 1455557 1455558, overlap 1455557 GTCATATTGAAAAGC CCGCC AAAGCC GGCGG TTTTTCGTCCCTGCA TERM 1677 1455752 - 1455785 + G 72 -4.4 -4.56597 | opp_overlap 1455772 CGCCAAGGCGGTGGC CTGGGAATCCACCG GCAAGA CGGTGGGGGCCGAG TTTTTCGCCGCCCAC AHA_1342 1455540 - 1457828 + | oxidoreductase alpha (molybdopterin) subunit TERM 1678 1457901 - 1457935 + T 100 -17.3 -3.08464 | opp_overlap 1457902 1457905 1457908, overlap 1457905 1457908 CCGCACATCCTATAA ACAACAACGCCGCAT AAGAG ATGCGGCGTTGTTGA TTGCGTGACTGGTGC TERM 1679 1457934 - 1457902 - T 100 -20.8 -3.91144 | opp_overlap 1457901 1457905 1457908, overlap 1457905 1457908 CGCACATCCTATAAA CAACAACGCCGCAT AAGAG ATGCGGCGTTGTTG ATTGCGTGACTGGTG TERM 1680 1457931 - 1457905 - T 100 -16.7 -4.08279 | opp_overlap 1457905 1457901 1457908, overlap 1457902 1457908 ACATCCTATAAACAA CAACGCCGCAT AAGAG ATGCGGCGTTG TTGATTGCGTGACTG TERM 1681 1457905 - 1457931 + T 100 -16.7 -3.3782 | opp_overlap 1457902 1457905 1457908, overlap 1457901 1457908 ACATCCTATAAACAA CAACGCCGCAT AAGAG ATGCGGCGTTG TTGATTGCGTGACTG TERM 1682 1457908 - 1457928 + T 90 -12.6 -3.82604 | opp_overlap 1457905 1457902 1457908, overlap 1457905 1457901 TCCTATAAACAACAA CGCCGCAT AAGAG ATGCGGCG TTGTTGATTGCGTGA TERM 1683 1457928 - 1457908 - T 95 -12.6 -4.15703 | opp_overlap 1457908 1457905 1457901, overlap 1457905 1457902 TCCTATAAACAACAA CGCCGCAT AAGAG ATGCGGCG TTGTTGATTGCGTGA AHA_1344 1458846 - 1458106 - | putative hydrolase TERM 1684 1459047 - 1459065 + H 100 -12.4 -5.85178 | AACCTCATTTCCCCG CCGTCGCG CCC TGCGACGG TTTTTTTTGCCTGTT TERM 1685 1459143 - 1459115 - H 90 -4.4 -5.41143 | overlap 1459116 TACCGGGCAAAAAAA TGCCCAACTAGC ATGAA GCAGGTTGGGCG AGACTTAATGTTTAA TERM 1686 1459354 - 1459338 - g 74 -2.2 -4.82154 | overlap 1459340 AATCGATACCAAAAA CCGCAT TCTCG ATGCCG CTGAGGTGTTGTTTG AHA_1345 1459315 - 1459968 + | PsrA protein TERM 1687 1460101 - 1460088 - g 72 -3.7 -4.59773 | CTCCATCCGTAAAAA GGTGG TCAC CCGCC CGGTGTTCGGCATCT TERM 1688 1460250 - 1460224 - g 83 -5 -5.0538 | overlap 1460226 1460243 CCCGACTGGAAAAAA CTGCACGGCT ACGGTAA AGCCGAGCTG ACCGCCGAGGAGCAG AHA_1346 1460017 - 1462341 + | acyl-CoA dehydrogenase TERM 1689 1462368 - 1462384 + F 100 -13.7 -6.08342 | opp_overlap 1462368 CTCCTGAACCTGAAA CCGGCCA TCA TGGCCGG TTTTTTTGTTTGTTA TERM 1690 1462384 - 1462368 - f 89 -13.7 -3.66178 | opp_overlap 1462368 CTCCTGAACCTGAAA CCGGCCA TCA TGGCCGG TTTTTTTGTTTGTTA AHA_1347 1462512 - 1465574 + | AcrB/AcrD/AcrF family protein AHA_1348 1465590 - 1466636 + | RND family efflux transporter MFP subunit TERM 1691 1466678 - 1466661 - T 100 -12.7 -5.60993 | opp_overlap 1466661 TTCGCCATAAAAAAA CGGCTCC CGCG GGAGCCG TTTTTGGTGCCGGTG TERM 1692 1466661 - 1466678 + T 100 -12.7 -4.72986 | opp_overlap 1466661 TTCGCCATAAAAAAA CGGCTCC CGCG GGAGCCG TTTTTGGTGCCGGTG pyk-2 1468141 - 1466702 - | pyruvate kinase TERM 1693 1468220 - 1468233 + r 74 -4.5 -4.731 | TGCACCCGCTTGCAA GCCAT CTGG GTGGC TTTTGTTACTAAATT TERM 1694 1468303 - 1468279 - R 81 -13.6 -2.88579 | gap 1, opp_overlap 1468282 1468296, overlap 1468281 GGAAGGTGGCAGAGA CAGCCGGGGGC CGAG GCCCCCG-CTG CTTACGAAGAGTGGG hexR 1469168 - 1468305 - | DNA-binding transcriptional regulator HexR TERM 1695 1469376 - 1469362 - H 71 -8.6 -3.88583 | GAAAGCGCTTACAAA TGTTGC AAA GCAACA ACACTGTGAGCGGGC TERM 1696 1469485 - 1469459 - H 77 -8 -4.12603 | gap 1 GGCACCAAATAATAA GTGCGGGACGG TAACGG CCGCCCCG-AC CCCAGTAACGAAGGA glk 1469509 - 1470477 + | glucokinase TERM 1697 1470642 - 1470658 + T 100 -10.8 -5.64274 | GCCTGAACTGTTTCA CCGGCC CTCGC GGCCGG TTTTTTTATGCCTGC TERM 1698 1470761 - 1470736 - T 100 -20.5 -2.52464 | CTGCGCCGCAATGGA CTGCGCCTGCC GGGT GGCAGGCGCAG TGGGTAGGGATGGGC AHA_1352 1472135 - 1470777 - | sensor protein PhoQ AHA_1353 1472866 - 1472159 - | transcriptional regulatory protein PhoP AHA_1354 1475131 - 1472972 - | RTX toxin transporter TERM 1699 1473739 - 1473758 + g 70 -10.6 -3.66018 | TGGCACCCTGGAGGG CGGGCACG GAGG CGAGCCCG TTGTTGCCATGCTCC rtxD 1476498 - 1475134 - | RTX toxin transporter rtxB 1478582 - 1476495 - | RTX toxin transporter TERM 1700 1477260 - 1477232 - G 73 -6.7 -4.25104 | gap 1 CCCTCTCCAGCAAAA TGGCGCCGG-CA CTCACC TGACCCGCGCCA TCACGCTGGTGCTCG AHA_1357 1478891 - 1479289 + | hypothetical protein TERM 1701 1479366 - 1479355 - g 81 -4.4 -5.08088 | AACTGGCAACAAAAA CAAC ATAT GTTG GGAGGTGTCATGCTG TERM 1702 1479489 - 1479523 + G 93 -19.4 -3.36059 | overlap 1479493 TTACGAAGACTCATG CGGACGCCCGGTTGCA TTT TGCAACTGGGCGTTTG TCTCTTTATCCATTC TERM 1703 1479493 - 1479519 + G 100 -18.8 -4.31166 | overlap 1479489 GAAGACTCATGCGGA CGCCCGGTTGCA TTT TGCAACTGGGCG TTTGTCTCTTTATCC rtxC 1479322 - 1479771 + | cytolysin-activating lysine-acyltransferase RtxC TERM 1704 1484135 - 1484167 + G 74 -4.8 -4.56597 | gap 1, opp_overlap 1484163, overlap 1484137 1484153 GCGGGGCGCCCAGGG TTGGCAGCA-TGCCG GTGC CGGCATTGAAGCCGA TTTTTCCGCCGCCAC AHA_1359 1479789 - 1493846 + | structural toxin protein RtxA TERM 1705 1493878 - 1493895 + F 100 -11.3 -5.60993 | opp_overlap 1493878 CCCGTTAGGTAAAAA CCTGCTC TTCG GAGCAGG TTTTTTTATGGCAAG TERM 1706 1493895 - 1493878 - f 95 -11.3 -4.65895 | opp_overlap 1493878 CCCGTTAGGTAAAAA CCTGCTC TTCG GAGCAGG TTTTTTTATGGCAAG AHA_1360 1494201 - 1494695 + | acetyltransferase TERM 1707 1494771 - 1494749 - T 100 -13.5 -5.5604 | opp_overlap 1494749 GCAATCAATAAAAAA GCCAGTCAG GGTCA CTGACTGGC TTTTTTGTTGGCGCT TERM 1708 1494749 - 1494771 + T 100 -13.5 -5.45652 | opp_overlap 1494749 GCAATCAATAAAAAA GCCAGTCAG GGTCA CTGACTGGC TTTTTTGTTGGCGCT AHA_1361 1496124 - 1494796 - | hypothetical protein TERM 1709 1496215 - 1496191 - g 77 -4.1 -4.86621 | overlap 1496194 1496196 1496198 ATGGCTAACCAAAAA CTATACAGCCG GCA CGGCGGAATCG AACAATATCTCCGGC TERM 1710 1496702 - 1496735 + G 80 -5.3 -4.89567 | gap 1, opp_overlap 1496707, overlap 1496700 1496721 ATGAATCCAGCTACA CCGAACCG-CTGTTGT TCA ACAGCAAACTGTTCGG TTTTCTGTTTTGCGA AHA_1362 1496176 - 1497486 + | response regulator TERM 1711 1497501 - 1497463 - f 87 -13.2 -3.22298 | gap 2, opp_overlap 1497459 1497466 1497470, overlap 1497465 1497466 GCCATCCATCAGCAA TACCGAGAGCCCGCCGCC AGCTA GGCGGCGGGC-CT-GGTG TCATGACTTGCCTTA TERM 1712 1497499 - 1497465 - f 100 -15.8 -3.17527 | gap 2, opp_overlap 1497459 1497466 1497470, overlap 1497463 1497466 CATCCATCAGCAATA CCGAGAGCCCGCCGCC AGCTA GGCGGCGGGC-CT-GG TGTCATGACTTGCCT TERM 1713 1497499 - 1497466 - f 85 -16 -2.50195 | gap 1, opp_overlap 1497459 1497466 1497470, overlap 1497465 1497463 ATCCATCAGCAATAC CGAGAGCCCGCCGCC AGCTA GGCGGCGGGC-CTGG TGTCATGACTTGCCT TERM 1714 1497466 - 1497499 + F 86 -16 -2.83112 | gap 1, opp_overlap 1497465 1497466 1497463, overlap 1497459 1497470 ATCCATCAGCAATAC CGAGAGCCCGCCGCC AGCTA GGCGGCGGGC-CTGG TGTCATGACTTGCCT TERM 1715 1497470 - 1497496 + F 89 -16.5 -2.67441 | opp_overlap 1497465 1497466 1497463, overlap 1497466 1497459 ATCAGCAATACCGAG AGCCCGCCGCC AGCTA GGCGGCGGGCC TGGTGTCATGACTTG AHA_1363 1497715 - 1498491 + | hypothetical protein TERM 1716 1498504 - 1498549 + F 100 -22.7 -2.52896 | gap 1, overlap 1498527 TAGTCACCCGCTTTC CGGCCTGTTCCGTCGGCCCGCA TCT TGCTGGCTGACGGGA-AGGCCG TCACTTGGCAAATAA TERM 1717 1498955 - 1498927 - g 74 -9.5 -3.85817 | ATCGCCGGGCAGAAA TCCTCCATCGCCT TCG AGGCGACGGTGCA GGTACGCAACAAGAT fliE 1498693 - 1499010 + | flagellar hook-basal body complex protein FliE fliF 1499098 - 1500780 + | flagellar MS-ring protein fliG 1500773 - 1501834 + | flagellar motor switch protein G fliH 1501899 - 1502705 + | flagellar assembly protein FliH TERM 1718 1502708 - 1502739 + F 93 -12.9 -4.0492 | overlap 1502713 TGCCCGCGGCTAAGG GCGTGCGGGCCGC CAGGGT GCGGCCCGTCTGC TTTCTCTACCCATTC TERM 1719 1502713 - 1502734 + F 91 -14.4 -3.08695 | overlap 1502708 GCGGCTAAGGGCGTG CGGGCCGC CAGGGT GCGGCCCG TCTGCTTTCTCTACC fliI 1502778 - 1504109 + | flagellum-specific ATP synthase fliJ 1504136 - 1504576 + | flagellar export protein FliJ AHA_1370 1504806 - 1506689 + | putative flagellar hook-length control protein FliK TERM 1720 1506907 - 1506888 - g 76 -10.6 -3.85698 | TCCGGCGGCGACAAA CCGGCGGC CGAG GCCGCGGG GGAGGGCAAAGACGC fliL 1506747 - 1507265 + | flagellar basal body-associated protein FliL fliM 1507275 - 1508345 + | flagellar motor switch protein FliM fliN 1508397 - 1508789 + | flagellar motor switch protein FliN fliO 1508786 - 1509169 + | flagellar biosynthesis protein, FliO fliP 1509156 - 1509935 + | flagellar biosynthesis protein FliP fliQ 1509963 - 1510232 + | flagellar biosynthetic protein FliQ fliR 1510300 - 1511091 + | flagellar biosynthesis protein FliR flhB 1511226 - 1512356 + | flagellar biosynthetic protein FlhB TERM 1721 1513659 - 1513671 + G 91 -9.1 -4.4767 | opp_overlap 1513654, overlap 1513654 TGCGCAAGAAGCTCT CCCAG GAG CTGGG TTTTCTGGTGCCTGC flhA 1512464 - 1514566 + | flagellar biosynthesis protein FlhA flhF 1514583 - 1516004 + | flagellar biosynthesis protein FlhF AHA_1381 1516012 - 1516881 + | CobQ/CobB/MinD/ParA family protein fliA 1516874 - 1517593 + | flagellar biosynthesis sigma factor TERM 1722 1517675 - 1517688 + F 70 -9.5 -3.34517 | opp_overlap 1517675, overlap 1517673 GCATCATGTAAGTGA GCCGC TCTG GCGGC TATTTAGGAGGGAAT cheY 1517705 - 1518088 + | chemotaxis protein CheY cheZ 1518101 - 1518841 + | chemotaxis protein CheZ TERM 1723 1519802 - 1519768 - g 74 -14.8 -2.54896 | overlap 1519764 1519786 CCGGCAGCCAAGCCA GCCCCGGCCGCCGCCA AAC CGGCTGCGGCCCCGGC AAAACCGGCACCAGC cheA-2 1518853 - 1521039 + | chemotaxis protein CheA cheB-2 1521072 - 1522187 + | chemotaxis-specific methylesterase TERM 1724 1522756 - 1522772 + G 70 -12.3 -3.24924 | overlap 1522754 CGCCACTATTTACGG GGTTGGC TTT GCCAACC TGTTATACCTGCCGA motA 1522196 - 1522927 + | chemotaxis protein MotA AHA_1388 1522930 - 1523856 + | ompA family protein AHA_1389 1523861 - 1524655 + | CobQ/CobB/MinD/ParA family protein AHA_1390 1524652 - 1525524 + | CheW domain-containing protein TERM 1725 1525618 - 1525605 - g 72 -4.5 -4.62051 | AAACATGACAGAAAA GCGCA ATAT TGCAC AGAATCTGGCCGAAG cheW-2 1525594 - 1526082 + | chemotaxis protein CheW AHA_1392 1526101 - 1526487 + | ATPase involved in DNA repair TERM 1726 1526492 - 1526515 + F 100 -13.2 -4.27617 | GCCGCTCATGAATGT TCGGGAAGGC GTCC GCCTTCCTGA TTTTCCTCCCCTCTC ccmA 1526642 - 1527277 + | heme ABC exporter, ATP-binding protein CcmA TERM 1727 1527455 - 1527475 + G 71 -14 -2.64616 | overlap 1527455 1527457 CCGGCATCATCTGGG TGGCCGCC CTGCT GGCGGCCA TGCTGTCGCTGGAGC ccmB 1527283 - 1527951 + | heme exporter protein CcmB ccmC 1528115 - 1528855 + | heme exporter protein C TERM 1728 1529022 - 1528979 - g 95 -13.2 -4.26076 | gap 1, overlap 1529010 1529013 CCACCCGTATGAAAA CCCGCGC-CCTGCTCGGTG AACTGCG CAACAAGCAGGCGCGCGAG GCCCGCCGCAAGGCG AHA_1396 1528858 - 1529064 + | hypothetical protein ccmE 1529061 - 1529552 + | cytochrome c-type biogenesis protein CcmE TERM 1729 1530935 - 1530946 + G 71 -5.8 -4.26076 | CGCTGGTATTGAGCC TGGC CGCC GCCA TTTTGCTGCCGCTGC ccmF-1 1529635 - 1531590 + | cytochrome c-type biogenesis protein CcmF TERM 1730 1531991 - 1532012 + G 74 -10.1 -3.72027 | GGGGCTGGATCTGGG GGTCTACGG CGCG CCGGAGACC TTCTTCATCGACAGT dsbE 1531587 - 1532117 + | thiol:disulfide interchange protein DsbE AHA_1400 1532129 - 1532608 + | cytochrome c-type biogenesis protein CcmH AHA_1401 1532605 - 1533879 + | cytochrome c-type biogenesis protein CcmH vacJ 1533984 - 1534772 + | lipoprotein VacJ TERM 1731 1534821 - 1534806 - T 93 -11.8 -4.26351 | opp_overlap 1534806 GAGTAACGCAACAAA GGCGCC TGCG GGCGCC TTTTTCGTCTCTGCT TERM 1732 1534806 - 1534821 + T 100 -11.8 -4.85129 | opp_overlap 1534806 GAGTAACGCAACAAA GGCGCC TGCG GGCGCC TTTTTCGTCTCTGCT TERM 1733 1534858 - 1534877 + T 100 -16.4 -4.18018 | opp_overlap 1534858 CAGGCATAAAAAAAA CGCCCCGC AAGA GCGGGGCG TTTTGGCTAGAACGG TERM 1734 1534877 - 1534858 - T 100 -16.4 -5.96219 | opp_overlap 1534858 CAGGCATAAAAAAAA CGCCCCGC AAGA GCGGGGCG TTTTGGCTAGAACGG AHA_1403 1535483 - 1534899 - | superoxide dismutase (Fe) AHA_1404 1535770 - 1536114 + | putative glutaredoxin-like protein TERM 1735 1536133 - 1536090 - T 80 -10.9 -3.81488 | TGCCGCCAAACACAA GCAGGATGACGCCGCCGCC GAATAA GGCAGCAGCTGCATCATGC AAAAAGGGGAGCCGC TERM 1736 1536139 - 1536157 + T 100 -16 -5.63517 | opp_overlap 1536139 TGCATCATGCAAAAA GGGGAGCC GCT GGCTCCCC TTTTTTATTTCACAA TERM 1737 1536157 - 1536139 - T 100 -16 -4.68593 | opp_overlap 1536139 TGCATCATGCAAAAA GGGGAGCC GCT GGCTCCCC TTTTTTATTTCACAA AHA_1405 1537505 - 1536192 - | tRNA and rRNA cytosine-C5-methylase TERM 1738 1537002 - 1537013 + g 76 -5.8 -4.56775 | GGCTTCGCCCAGTTG CTCG CTGC CGAG TTTTTCCAGCCAGGT TERM 1739 1537926 - 1537975 + G 70 -9.9 -3.55548 | gap 1, opp_overlap 1537927 1537928, overlap 1537927 CCTTCAAGGGCTATA ACCCGGCGGTACC-GGTAGAGACG GGA CGTTTTGACCTGGGGCCGCTGGGC TTTCACGCCATGTTC TERM 1740 1537927 - 1537974 + G 72 -13.4 -2.73007 | gap 1, opp_overlap 1537927 1537928, overlap 1537926 CTTCAAGGGCTATAA CCCGGCGGTACC-GGTAGAGACG GGA CGTTTTGACCTGGGGCCGCTGGG CTTTCACGCCATGTT AHA_1406 1537565 - 1539595 + | hypothetical protein AHA_1407 1539592 - 1539915 + | hypothetical protein TERM 1741 1539955 - 1539976 + F 100 -11.5 -5.00616 | opp_overlap 1539953 1539957, overlap 1539957 AAGGGCATACCAAGG GAGGGAGGC GTGA GCCTCCCCC TTTTTTGCAGCCGCC TERM 1742 1539957 - 1539974 + F 76 -12.7 -2.75708 | opp_overlap 1539957 1539953, overlap 1539955 GGGCATACCAAGGGA GGGAGGC GTGA GCCTCCC CCTTTTTTGCAGCCG TERM 1743 1539974 - 1539957 - f 75 -12.7 -2.58714 | opp_overlap 1539955 1539957, overlap 1539953 GGGCATACCAAGGGA GGGAGGC GTGA GCCTCCC CCTTTTTTGCAGCCG pdxH 1540087 - 1540725 + | pyridoxamine 5'-phosphate oxidase AHA_1409 1540755 - 1541369 + | glutathione S-transferase family protein TERM 1744 1542374 - 1542400 + G 89 -14.4 -3.96148 | CAAGCAGGCGCCGAG GAGGGTGAGCCG AGG CGGCTGGCCCTC TTTCTGGTAGAGCAG AHA_1410 1541369 - 1542988 + | hypothetical protein AHA_1411 1543021 - 1543542 + | acetyltransferase TERM 1745 1543557 - 1543586 + T 93 -15.9 -3.0094 | opp_overlap 1543564, overlap 1543564 AATGGTCTATATCTG TGAAAAAGGCGCC CTCG GGCGCCTTTTTTA TCTCTGTCCGTCAGC TERM 1746 1543564 - 1543579 + T 100 -11.8 -5.4492 | opp_overlap 1543564, overlap 1543557 TATATCTGTGAAAAA GGCGCC CTCG GGCGCC TTTTTTATCTCTGTC TERM 1747 1543579 - 1543564 - T 100 -11.8 -4.59109 | opp_overlap 1543564 1543557 TATATCTGTGAAAAA GGCGCC CTCG GGCGCC TTTTTTATCTCTGTC AHA_1412 1544732 - 1543602 - | cupin superfamily protein TERM 1748 1544810 - 1544769 - R 100 -20.3 -3.14126 | opp_overlap 1544771 1544808, overlap 1544761 1544807 CGACAAAGGTCAAGA GAGGTCTTGCCGGAGGC GGTGGCTG GCCTCGGGCAAGACCTC TTGCAAAGGGTGTAT TERM 1749 1544771 - 1544808 + r 100 -17.1 -3.02263 | gap 1, opp_overlap 1544769 1544761 1544807 ACAAAGGTCAAGAGA GGTCTTGCCGGAGG-CGG TGG CTGGCCTCGGGCAAGACC TCTTGCAAAGGGTGT TERM 1750 1544836 - 1544889 + r 70 -9.6 -3.4082 | gap 1, opp_overlap 1544842 1544845, overlap 1544845 TGTATAGGGTGCCAC ATAAAATAACCGGGGCCCTGTTGCA GATCA TGCA-CAGGGCCCCGGTGGTGTCAC TTATCCGCTTATTTC TERM 1751 1544883 - 1544842 - R 100 -15.2 -4.52589 | gap 1, opp_overlap 1544836 1544845, overlap 1544845 GGGTGCCACATAAAA TAACCGGGGCCCTGTTGCA GATCA TGCA-CAGGGCCCCGGTGG TGTCACTTATCCGCT TERM 1752 1544880 - 1544845 - R 100 -21.3 -4.38141 | gap 1, opp_overlap 1544836 1544845, overlap 1544842 TGCCACATAAAATAA CCGGGGCCCTGTTGCA GATCA TGCA-CAGGGCCCCGG TGGTGTCACTTATCC TERM 1753 1544845 - 1544880 + r 100 -21.3 -2.67705 | gap 1, opp_overlap 1544845 1544842, overlap 1544836 TGCCACATAAAATAA CCGGGGCCCTGTTGCA GATCA TGCA-CAGGGCCCCGG TGGTGTCACTTATCC purB 1546268 - 1544898 - | adenylosuccinate lyase AHA_1414 1547010 - 1546396 - | hypothetical protein TERM 1754 1547129 - 1547167 + r 78 -11.7 -3.28712 | gap 1, overlap 1547109 1547110 TCTCCCTCAGGGAGA GGGTCAGGG-TGAGGGGG GTTA TCCCCTCATCCCCAACCC TTCTCCCGCGAGGGG trmU 1548329 - 1547223 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1755 1547779 - 1547801 + g 74 -5.4 -4.59773 | overlap 1547780 ATGAGATCCAGCTGC TCGGCGATGC GGC GCACCTCCGG TTTTTCAAGATCGCC AHA_1416 1549115 - 1548648 - | 7,8-dihydro-8-oxoguanine-triphosphatase TERM 1756 1548812 - 1548828 + g 72 -7.9 -4.11216 | CAGGATCCTCTGGAT GGTGCTG ACC CGGCGCC TTTTCAAGGTCGAAG TERM 1757 1549076 - 1549050 - G 73 -8.6 -3.99324 | TTCTACCAGCAGAAA GCGGCCCTGCCA GTG TACCAGGGCGGC CACGGTGAGGCGGGT AHA_1417 1550152 - 1549211 - | ribosomal large subunit pseudouridine synthase E AHA_1418 1550986 - 1550219 - | fructose specific permease TERM 1758 1550694 - 1550658 - G 93 -18.7 -3.34895 | overlap 1550660 GCCAGGGTGAAGCAA TAGTCGGGCAGCGCCTG GCC CAGGCGCTGCTCGGCCA GGGCGGCGCTGCCGG TERM 1759 1550692 - 1550660 - G 93 -19.1 -3.24329 | overlap 1550658 CAGGGTGAAGCAATA GTCGGGCAGCGCCTG GCC CAGGCGCTGCTCGGC CAGGGCGGCGCTGCC AHA_1419 1551292 - 1550987 - | phosphotransferase system enzyme II, fructose-specific TERM 1760 1551486 - 1551465 - R 100 -18.7 -5.26918 | ACAGGGGATAAAAAA CGGCCCGCC AGAA GGCGGGCCG AATGCACACTACGGA TERM 1761 1551542 - 1551508 - R 79 -11.2 -3.67296 | CACTACGGAGTGAAA CCGTGCGACCGGGCAG TGA CTGCCCGGATGCTAGG GCTCAGGCGGACTGG TERM 1762 1551604 - 1551620 + r 71 -10.1 -3.60475 | overlap 1551613 GTTCAGGCGGACTGG GTCGCCA AAG TGGCGGC TTTCAGCTCCCGCTT uhpT 1552997 - 1551591 - | sugar phosphate antiporter TERM 1763 1553122 - 1553084 - R 74 -8 -3.96483 | overlap 1553087 ACGCCACGGAAAGAA CAACAGGAAGCGGGCGCG GTG CGCGGCGAGTCCCTGTCG ATTGAACCCATGCCC TERM 1764 1553367 - 1553340 - R 100 -15.6 -4.42788 | opp_overlap 1553338 1553337, overlap 1553343 TCGAACCCGACAAAA GAGGAGGCCACC CGCA GGTGGCCTCGTC CGGTTTGGTCGCCGC TERM 1765 1553364 - 1553343 - R 87 -15.9 -2.88446 | opp_overlap 1553338 1553337, overlap 1553340 AACCCGACAAAAGAG GAGGCCACC CGCA GGTGGCCTC GTCCGGTTTGGTCGC AHA_1421 1555318 - 1553411 - | pts system, fructose-specific IIABC component TERM 1766 1555816 - 1555844 + r 90 -4.5 -5.40072 | overlap 1555817 GGCATTGGCCCGGTA GGGTGCAATGAAC GAA GTGAATTGCACCG TTTTTTTGGAGGCAG TERM 1767 1555817 - 1555843 + r 71 -8 -3.83561 | overlap 1555816 GCATTGGCCCGGTAG GGTGCAATGAAC GAA GTGAATTGCACC GTTTTTTTGGAGGCA TERM 1768 1555901 - 1555864 - R 79 -7.8 -4.42386 | gap 1, opp_overlap 1555868 1555871 TTTGGAGGCAGAAAA GGTAGAGGTGCAATGCG CTGCT CTTATTGCACC-CTACC GAATTGATGACGTGA TERM 1769 1556872 - 1556833 - R 80 -9.2 -4.18488 | ATTGAGTTGAATAAA GAGGCGGAATTCCACGCT ACCG ACCGTGGATTACAGCCTC CAGCCTGCTACGGTC AHA_1422 1557551 - 1557075 - | IAA acetyltransferase AHA_1423 1557880 - 1557605 - | hypothetical protein AHA_1424 1558440 - 1557976 - | MerR family transcriptional regulator AHA_1425 1558653 - 1559897 + | FMN-binding oxidoreductase malI-1 1560960 - 1559923 - | DNA-binding transcriptional repressor MalI TERM 1770 1560793 - 1560810 + g 71 -4.7 -4.40804 | GGCGGCGGCGCTGTT GGGCACG TAGT CGAGCTC TTTTATCGCCTGCTG malX 1561236 - 1562822 + | bifunctional maltose and glucose-specific PTS system components IICB TERM 1771 1562849 - 1562863 + F 90 -12.8 -3.85518 | GTTAACGTACGTCGG GGGGGC CAT GCCCCC TTGTTCATTGCTGTT TERM 1772 1563631 - 1563642 + G 72 -7.2 -4.15044 | ATTCCGGCCCTTGGC GGCG CCTA CGCC TTTATTGCCAACGCC AHA_1428 1562896 - 1564098 + | protein MalY TERM 1773 1564096 - 1564128 + T 95 -14.2 -3.53343 | gap 1, opp_overlap 1564098, overlap 1564103 GAGCTGCTGGCCAGA TAGCGCGCCGCCGCC CTCG GGCGGCGGT-TGCTA TTTCGAGGCGGCCTT TERM 1774 1564103 - 1564122 + T 100 -16.4 -3.45571 | opp_overlap 1564098, overlap 1564096 TGGCCAGATAGCGCG CCGCCGCC CTCG GGCGGCGG TTGCTATTTCGAGGC AHA_1429 1564785 - 1564126 - | hypothetical protein TERM 1775 1564839 - 1564850 + r 76 -3 -5.10064 | CGGGTTCCAGCTCAG CATT GCGC AATG TTTTTATATGTTGGC AHA_1430 1565289 - 1564945 - | hypothetical protein TERM 1776 1565406 - 1565386 - R 100 -14.7 -4.56358 | opp_overlap 1565386 1565388 GATACCGAGATAAAA GAAGGGGCC CTT GGCCCCCTC TGTCGTAGGTACTCT TERM 1777 1565386 - 1565406 + r 76 -12.5 -2.81642 | opp_overlap 1565386, overlap 1565388 GATACCGAGATAAAA GAAGGGGCC CTT GGCCCCCTC TGTCGTAGGTACTCT AHA_1431 1567817 - 1565433 - | pts system, fructose-specific IIABC component TERM 1778 1565656 - 1565672 + g 74 -5 -4.59511 | overlap 1565657 ACTTTCAGCTTGATG CCGGCC TTGGC GGCCGC TTTTTGCAGACTCTT AHA_1432 1568050 - 1568199 + | hypothetical protein TERM 1779 1568271 - 1568251 - T 100 -16.1 -4.3208 | opp_overlap 1568251 CGGCAGAATGTAAAA CCCCCGCCA GCA CGGCGGGGG TTTTTTATTGTGGTT TERM 1780 1568251 - 1568271 + T 100 -15.4 -5.59534 | opp_overlap 1568251 CGGCAGAATGTAAAA CCCCCGCC AGCAC GGCGGGGG TTTTTTATTGTGGTT AHA_1433 1568974 - 1568276 - | hypothetical protein TERM 1781 1568768 - 1568758 - G 73 -6.8 -4.30576 | GCGCCAGCAGTAAAA CGGA TAA TCCG CAGTAGCCTTTCATG TERM 1782 1568996 - 1568972 - G 100 -18.7 -5.04385 | opp_overlap 1568975 GAGACCGTCAAAAAA CAAGGGCCATC CTG GATGGCCCTTG TGGTCATGAGTCGAT TERM 1783 1568975 - 1568993 + r 95 -14.6 -3.44527 | opp_overlap 1568972 ACCGTCAAAAAACAA GGGCCATC CTG GATGGCCC TTGTGGTCATGAGTC manA 1570221 - 1569022 - | mannose-6-phosphate isomerase, class I TERM 1784 1570302 - 1570324 + H 95 -14.8 -3.19255 | opp_overlap 1570300 1570297 1570299 CGGACTATAACATGG GCGGTCGCGG GCA CCGCAACCGC TTGCCTCTCTCTTGA TERM 1785 1570969 - 1571024 + G 75 -14 -3.06915 | gap 1 CATCGCTTCAACGTC TCGGCCAGCCACCTGTCGCACCTGTTT CGC GAGCAGGGGC-ACATGCGCCTGGCCGA TTACATCAGCTGGGT AHA_1435 1570336 - 1571226 + | putative HTH-type transcriptional regulator YijO icd 1571429 - 1572682 + | isocitrate dehydrogenase TERM 1786 1572723 - 1572705 - T 100 -13.8 -4.36595 | opp_overlap 1572705 CACTGAAATGCAAAA CCGGCGCC ATG AGCGCCGG TTTTTTTATGGGTGA TERM 1787 1572705 - 1572723 + T 100 -13.1 -5.64274 | opp_overlap 1572705 CACTGAAATGCAAAA CCGGCGC CATGA GCGCCGG TTTTTTTATGGGTGA AHA_1437 1572946 - 1572770 - | hypothetical protein TERM 1788 1573002 - 1573021 + r 77 -4.8 -4.87665 | overlap 1572968 1573003 CAGGCTTTGTGCCGG ACGGGGCC ATCA GGCCACGG TTTTTCTGCATGCCC TERM 1789 1573260 - 1573244 - R 100 -13.7 -4.95155 | opp_overlap 1573244 CCCACACGAGAAAAA CCCGCCA GTC TGGCGGG TTTTATGGCTGAAAA TERM 1790 1573244 - 1573260 + r 100 -13.7 -4.42386 | opp_overlap 1573244 CCCACACGAGAAAAA CCCGCCA GTC TGGCGGG TTTTATGGCTGAAAA TERM 1791 1573299 - 1573279 - R 90 -4.6 -5.41143 | overlap 1573282 TATGGCTGAAAAAAA GATCAGCG GTGGG CGCTGGCC AGGTAGTTTTCCATC dsdA 1574612 - 1573281 - | D-serine dehydratase TERM 1792 1574278 - 1574291 + g 81 -4.5 -5.00616 | ATGGAACCCGAGATG GGCAG ATGG CTGTC TTTTTTCAGCAGCAA dsdC 1574911 - 1575870 + | DNA-binding transcriptional regulator DsdC AHA_1440 1575913 - 1576578 + | hypothetical protein TERM 1793 1576771 - 1576812 + G 90 -15.3 -3.72576 | gap 1, opp_overlap 1576804 1576806 TGTTGAGCTCTACTG GCAGCACTCTCTACC-TTAC TCG GCAACGGAAGAGAGTGCTGC TTTGCTCAAGCAGAG TERM 1794 1577162 - 1577140 - g 78 -10.6 -4.0371 | opp_overlap 1577147, overlap 1577149 TATCTGCGACATAAA GGGCAATCAG GGG CTGATTGGCC CCAGTGTTGGGCTGG TERM 1795 1577242 - 1577257 + G 71 -6.1 -4.25104 | AGTACTGAGAGAGTT GCAGG GGGGAA CCTGC TTTTACTGCCGCAAG AHA_1441 1576562 - 1577623 + | hypothetical protein TERM 1796 1577665 - 1577688 + T 100 -18.2 -3.56594 | opp_overlap 1577665, overlap 1577655 TGCCGGATATAAAAA GGGCCACCTC TTGC GAGGTGGCCC TTTCCAAACGTTTGG TERM 1797 1577688 - 1577665 - T 100 -18.2 -4.96848 | opp_overlap 1577665 1577655 TGCCGGATATAAAAA GGGCCACCTC TTGC GAGGTGGCCC TTTCCAAACGTTTGG TERM 1798 1577959 - 1577974 + T 89 -3.2 -5.49809 | overlap 1577961 GCGAGTGCGTAGTTT TCGTCG TTTG CGACTA TTTTTTTGCGGTTTA TERM 1799 1577961 - 1577972 + T 71 -5.8 -4.36993 | overlap 1577959 GAGTGCGTAGTTTTC GTCG TTTG CGAC TATTTTTTTGCGGTT TERM 1800 1578111 - 1578146 + T 100 -16.2 -4.15044 | opp_overlap 1578122, overlap 1578114 1578138 1578140 CATGGCAAGGCGTTG ATGGCAATCGACCGGC CTTG GCCGGTCGATTGCTGG TTTATTGGGCGGCGC TERM 1801 1578114 - 1578143 + T 100 -22.3 -3.10244 | opp_overlap 1578122, overlap 1578111 1578138 1578140 GGCAAGGCGTTGATG GCAATCGACCGGC CTTG GCCGGTCGATTGC TGGTTTATTGGGCGG smpB 1578668 - 1578180 - | SsrA-binding protein AHA_1444 1578838 - 1579272 + | oligoketide cyclase/lipid transport protein AHA_1445 1579265 - 1579612 + | protein YfjF TERM 1802 1579631 - 1579614 - T 79 -11.3 -3.74519 | opp_overlap 1579611 AACAGTCTGACTAAA TGCCTGC ATTG GCAGGCA TGATACTTCGTATAA TERM 1803 1579665 - 1579650 - T 83 -6.1 -4.83615 | TACTTCGTATAAAAA GTGCC AGCACA GGCAC GACACCGCATATAAA TERM 1804 1579697 - 1579684 - T 100 -9.5 -5.37043 | opp_overlap 1579684 ACCGCATATAAAAAA GGCGC CTTG GCGCC TTTTTTGATCCCGTC TERM 1805 1579684 - 1579697 + T 100 -9.5 -5.15634 | opp_overlap 1579684 ACCGCATATAAAAAA GGCGC CTTG GCGCC TTTTTTGATCCCGTC AHA_1446 1580375 - 1579740 - | nucleoside-diphosphate-sugar epimerases TERM 1806 1580490 - 1580466 - R 100 -14.4 -4.07568 | opp_overlap 1580471, overlap 1580471 CTGGCGGCGCTAAAA CAAAACCGGC GCGAG GCCGGTTTTG TGGATGGGATCAGAG TERM 1807 1580485 - 1580471 - R 95 -8.5 -5.07652 | opp_overlap 1580471, overlap 1580466 GGCGCTAAAACAAAA CCGGC GCGAG GCCGG TTTTGTGGATGGGAT TERM 1808 1580471 - 1580485 + r 83 -8.5 -4.42653 | opp_overlap 1580471 1580466 GGCGCTAAAACAAAA CCGGC GCGAG GCCGG TTTTGTGGATGGGAT AHA_1447 1580838 - 1580500 - | outer membrane lipoprotein OmlA TERM 1809 1580952 - 1580924 - R 95 -8.1 -5.10497 | overlap 1580926 AAGCCATGGAAAAAA TAGCCAGAGGG TGCCTGG CCCTCTGGCCG ATGGGATCACTCCTC TERM 1810 1580950 - 1580926 - R 95 -12.9 -4.17608 | overlap 1580924 GCCATGGAAAAAATA GCCAGAGGG TGCCTGG CCCTCTGGC CGATGGGATCACTCC AHA_1448 1581678 - 1580959 - | hypothetical protein AHA_1449 1584766 - 1581680 - | hypothetical protein AHA_1450 1584989 - 1585192 + | Flp/Fap pilin component superfamily protein AHA_1451 1585189 - 1585605 + | leader peptidase PilD AHA_1452 1585615 - 1586505 + | Flp pilus assembly protein CpaB AHA_1453 1586525 - 1587922 + | protein transporter, outer bacterial membrane secretin (secretin) family protein AHA_1454 1587934 - 1588482 + | hypothetical protein AHA_1455 1588486 - 1589619 + | hypothetical protein TERM 1811 1590911 - 1590864 - g 82 -11.1 -4.10164 | opp_overlap 1590864, overlap 1590860 GCAGTAGCAGAGAAA GCCCGTCAGGCCGGCTTGCTG AGCGAG CTGCAATCCTGCATGGCGGGC GACGGGGAGCCAGTC AHA_1456 1589619 - 1590932 + | CpaF AHA_1457 1590929 - 1591813 + | Flp pilus assembly protein TadB TERM 1812 1592369 - 1592380 + G 76 -5.8 -4.56775 | overlap 1592362 1592365 GCGCTGGAGCCTGGC CTGG CCCG CCAG TTTTTGCGCACCCAT AHA_1458 1591817 - 1592701 + | Flp pilus assembly protein TadC AHA_1459 1592721 - 1593485 + | Flp pilus assembly protein TadD TERM 1813 1593651 - 1593680 + G 91 -17.9 -3.17075 | CCGAATCGGCAGCGG GGCGGATCCCCTC GGCC GACGGGATCCGCC TTCGCTTGCAGCAAC AHA_1460 1593482 - 1593955 + | hypothetical protein AHA_1461 1593952 - 1594458 + | hypothetical protein AHA_1462 1594459 - 1595841 + | hypothetical protein TERM 1814 1595860 - 1595883 + T 75 -12.4 -2.88999 | opp_overlap 1595861, overlap 1595863 CATATGGTGCAAAAA AGAGGGGCCA AGTT TGGCCCCTCA TCTCATCTGTCGAGC TERM 1815 1595882 - 1595861 - T 100 -15.9 -5.02476 | opp_overlap 1595860 1595863 ATATGGTGCAAAAAA GAGGGGCCA AGTT TGGCCCCTC ATCTCATCTGTCGAG TERM 1816 1595863 - 1595880 + T 75 -12.7 -2.69406 | opp_overlap 1595861, overlap 1595860 ATGGTGCAAAAAAGA GGGGCCA AGTT TGGCCCC TCATCTCATCTGTCG AHA_1463 1597057 - 1595906 - | 1,3-propanediol dehydrogenase udp 1597450 - 1598205 + | uridine phosphorylase TERM 1817 1598226 - 1598258 + T 86 -12 -3.88583 | gap 1 CCACACCGAGTGGGG GGTGGGGGCCGTTGC GAAA GCG-CGGCCCCTATC TTTATCCGCCGTTTA AHA_1465 1599054 - 1598323 - | ribosomal large subunit pseudouridine synthase A TERM 1818 1599349 - 1599325 - g 76 -13.5 -3.17392 | CAGCCCCGAACTCAA GGTGCTGGCGG TCA CCACCAGCGCC GGCAACCAGACGCCG TERM 1819 1599887 - 1599901 + G 73 -3.4 -4.79223 | overlap 1599889 GTGGCCCAGTGCGTG GCCGGG CTG CTCGAC TTTTTCATGATCTAC rihA 1599239 - 1600174 + | ribonucleoside hydrolase 1 AHA_1467 1600209 - 1600679 + | hypothetical protein TERM 1820 1600750 - 1600722 - T 100 -20.4 -3.72788 | opp_overlap 1600722, overlap 1600725 GCTGACAAGATACAA GAAGGGCCAGCC TTGTC GGCTGGCCCTTC TTTATTTGGCGGATT TERM 1821 1600722 - 1600750 + T 100 -20.4 -4.42464 | opp_overlap 1600722 1600725 GCTGACAAGATACAA GAAGGGCCAGCC TTGTC GGCTGGCCCTTC TTTATTTGGCGGATT TERM 1822 1600747 - 1600725 - T 100 -16.3 -3.98649 | opp_overlap 1600722, overlap 1600722 GACAAGATACAAGAA GGGCCAGCC TTGTC GGCTGGCCC TTCTTTATTTGGCGG AHA_1468 1601112 - 1600816 - | hypothetical protein AHA_1469 1601710 - 1601141 - | hypothetical protein TERM 1823 1601830 - 1601801 - R 83 -12.1 -3.63515 | opp_overlap 1601807, overlap 1601803 1601804 1601807 CGTCAGCTTCAATAA CAGCAAGGCCCCG GATC CGGGGCCTTGGTC TGCGCTCACGAGGGC TERM 1824 1601828 - 1601803 - R 95 -14.7 -3.39784 | opp_overlap 1601807, overlap 1601801 1601804 1601807 TCAGCTTCAATAACA GCAAGGCCCCG GATC CGGGGCCTTGG TCTGCGCTCACGAGG TERM 1825 1601827 - 1601804 - R 95 -18.2 -2.63549 | opp_overlap 1601807, overlap 1601803 1601801 1601807 CAGCTTCAATAACAG CAAGGCCCCG GATC CGGGGCCTTG GTCTGCGCTCACGAG TERM 1826 1601807 - 1601824 + r 95 -14.1 -3.27022 | opp_overlap 1601804 1601803 1601801 1601807 CTTCAATAACAGCAA GGCCCCG GATC CGGGGCC TTGGTCTGCGCTCAC TERM 1827 1601824 - 1601807 - R 95 -14.1 -3.46509 | opp_overlap 1601807, overlap 1601804 1601803 1601801 CTTCAATAACAGCAA GGCCCCG GATC CGGGGCC TTGGTCTGCGCTCAC AHA_1470 1603472 - 1601850 - | methyl-accepting chemotaxis protein TERM 1828 1603529 - 1603539 + H 74 -3.2 -4.87665 | ACAGGCGCGACAAAC CTTG TCA CAGG TTTTTATGGCTGAAA TERM 1829 1604018 - 1604037 + G 74 -9.2 -3.82218 | TTCGTCACCGCCATC GCCAACCC CAAG GGGTGGGC TTTCATGGTCTCCCT AHA_1471 1603637 - 1604269 + | amino acid transporter LysE TERM 1830 1604303 - 1604319 + F 100 -15.1 -4.77438 | opp_overlap 1604303 TGAACCTGCCGAAAA GCCCCGC CCT GCGGGGC TTTTTCGTGATGCCT TERM 1831 1604319 - 1604303 - f 100 -15.1 -4.09739 | opp_overlap 1604303 TGAACCTGCCGAAAA GCCCCGC CCT GCGGGGC TTTTTCGTGATGCCT TERM 1832 1604814 - 1604853 + G 71 -13.1 -3.05384 | gap 1, opp_overlap 1604817 CACTGCGTCGCGCAA CGAGTGTGCATCA-CTTC ATCGA GAACCTGATGCACACTCG TTACGTGAACGGCGA AHA_1472 1604519 - 1605307 + | hypothetical protein TERM 1833 1605394 - 1605363 - T 100 -14.5 -3.88787 | opp_overlap 1605368, overlap 1605368 TGATAGCCTCATAAA GAAAAGCCCCGGG GTAATG CCCGGGGCTTTTT CGTTGGCGGCGCATC TERM 1834 1605368 - 1605389 + T 100 -14.4 -4.8622 | opp_overlap 1605363 1605368 GCCTCATAAAGAAAA GCCCCGGG GTAATG CCCGGGGC TTTTTCGTTGGCGGC TERM 1835 1605389 - 1605368 - T 100 -14.4 -4.99043 | opp_overlap 1605368, overlap 1605363 GCCTCATAAAGAAAA GCCCCGGG GTAATG CCCGGGGC TTTTTCGTTGGCGGC AHA_1473 1606637 - 1605429 - | Na(+)/H(+) antiporter TERM 1836 1606608 - 1606593 - G 73 -8.2 -4.00782 | opp_overlap 1606595 GTAGACCAGCAGAAA GGCGGC GATC ACCGCC AGGTTCTGGTAAATC AHA_1474 1607775 - 1606672 - | hyaluronidase, putative cvrA 1609545 - 1607818 - | potassium/proton antiporter TERM 1837 1609777 - 1609746 - R 100 -20.2 -2.89055 | opp_overlap 1609775 CAAAGTGGGCAGATA GCGACAGGGGCACC CGTG GGTGCCCCTGTCGG CGGGCTCGAGTCAGT AHA_1476 1609934 - 1609788 - | hypothetical protein AHA_1477 1610620 - 1609931 - | D-alanyl-D-alanine carboxypeptidase family protein dapE 1611744 - 1610617 - | succinyl-diaminopimelate desuccinylase AHA_1479 1612516 - 1611767 - | arsenate reductase TERM 1838 1612310 - 1612283 - GR 80 -9 -4.13767 | gap 1, overlap 1612284 TGGGGGAGGGGAAAA GTGC-CCGGCGCG GGA CGCGCCGGCGGGC ATCAGAGTTCGCTCT AHA_1480 1613223 - 1612312 - | LysR family transcriptional regulator TERM 1839 1613109 - 1613149 + gr 83 -13.1 -3.27923 | opp_overlap 1613095 1613090 AGCGGGCCAGTGCCC GGCTGACGGCCGGCTGGCT CAT GGCGAGCCGTTCGGCGGCC TTGGTGGTGTTACGC TERM 1840 1613438 - 1613454 + r 100 -15.1 -5.81412 | GTTGCTTGCTTAGTA CCCGCCG TCT CGGCGGG TTTTTTTTGCCTGCG TERM 1841 1613503 - 1613518 + r 86 -11.8 -3.7941 | opp_overlap 1613503 CAAAGAAGTACAAAA CGCGCC GGCG GGCGCG TTATTGTGAGGGGTG TERM 1842 1613518 - 1613503 - R 100 -11.8 -4.64157 | opp_overlap 1613503 CAAAGAAGTACAAAA CGCGCC GGCG GGCGCG TTATTGTGAGGGGTG AHA_1481 1613911 - 1613540 - | hypothetical protein TERM 1843 1613980 - 1613997 + H 71 -8.5 -3.81461 | overlap 1613993 CGTGGCAAAGGGATT CTAAAGG TTTG CCTTTAG TTTAAATTGCTGTTT AHA_1482 1614141 - 1615517 + | anaerobic C4-dicarboxylate uptake C (DcuC) family protein TERM 1844 1615520 - 1615548 + F 81 -13.9 -2.94032 | gap 1, opp_overlap 1615518, overlap 1615522 GCTGTTTATGTAACC GGGCGG-CGGAC GGCACG GTCCGTCCGCCC CTTTCATTCGGCCGT TERM 1845 1615522 - 1615549 + F 100 -14.1 -3.90588 | opp_overlap 1615518, overlap 1615520 TGTTTATGTAACCGG GCGGCGGACGG CACGGT CCGTCCGCCCC TTTCATTCGGCCGTC TERM 1846 1616193 - 1616239 + G 72 -13.7 -2.76263 | gap 2, overlap 1616190 GGCAAGGCCTCCCAC GCCGGCTCGGCGCTGAGCGAGGG GAT CTC-CGC-CATCACCGAGCTGGC TCATTGGGTGCTGGC AHA_1483 1615602 - 1616741 + | carboxypeptidase G2 TERM 1847 1616790 - 1616759 - T 100 -11.6 -4.87803 | opp_overlap 1616765, overlap 1616760 1616765 CAGCGTCAAAGAAAA GCAAAACGGGAGGC CATC GCCTCCCGTTTTTT ATCTGTCCTGTCGGT TERM 1848 1616789 - 1616760 - T 95 -15.1 -3.51958 | opp_overlap 1616765, overlap 1616759 1616765 AGCGTCAAAGAAAAG CAAAACGGGAGGC CATC GCCTCCCGTTTTT TATCTGTCCTGTCGG TERM 1849 1616784 - 1616765 - T 100 -15 -4.81644 | opp_overlap 1616765, overlap 1616760 1616759 CAAAGAAAAGCAAAA CGGGAGGC CATC GCCTCCCG TTTTTTATCTGTCCT TERM 1850 1616765 - 1616784 + T 100 -15 -5.43414 | opp_overlap 1616760 1616759 1616765 CAAAGAAAAGCAAAA CGGGAGGC CATC GCCTCCCG TTTTTTATCTGTCCT AHA_1484 1617489 - 1616833 - | hypothetical protein TERM 1851 1617571 - 1617602 + r 93 -15.8 -3.08464 | opp_overlap 1617573, overlap 1617575 TGGGGCAGGGCGCAA AACAGCAGGCCCCC GGGT GGGGGCCTGCTGGA TTGGCTGAATGGTGC TERM 1852 1617600 - 1617573 - R 100 -22.8 -4.09685 | opp_overlap 1617571 1617575 GGGCAGGGCGCAAAA CAGCAGGCCCCC GGGT GGGGGCCTGCTG GATTGGCTGAATGGT TERM 1853 1617575 - 1617598 + r 100 -19.6 -2.55213 | opp_overlap 1617573, overlap 1617571 GCAGGGCGCAAAACA GCAGGCCCCC GGGT GGGGGCCTGC TGGATTGGCTGAATG dcuB 1618968 - 1617625 - | anaerobic C4-dicarboxylate transporter TERM 1854 1619306 - 1619323 + r 95 -12.7 -4.07885 | opp_overlap 1619306 GACGGGCAACAAAAA GCCGACC CTGA GGTCGGC TTTTAAGGCAAAGTC TERM 1855 1619323 - 1619306 - R 100 -12.7 -5.07486 | opp_overlap 1619306 GACGGGCAACAAAAA GCCGACC CTGA GGTCGGC TTTTAAGGCAAAGTC asnC 1620745 - 1619345 - | asparaginyl-tRNA synthetase TERM 1856 1620164 - 1620188 + g 76 -8.6 -4.2349 | gap 1, overlap 1620176 CTTGTCATAGTCCAC CTTGCCG-GCA GGGG TGCGCGGCAGG TTTTCCATGTCCAGG AHA_1487 1622119 - 1621286 - | methyl-accepting chemotaxis protein TERM 1857 1622222 - 1622209 - R 74 -4.5 -4.72986 | overlap 1622218 CATTCTGATGAAAAA GAGTC AAAA GACCC TGCCTGGTCGGGCAG TERM 1858 1622241 - 1622218 - R 95 -11.7 -4.37991 | overlap 1622209 GAAAAAGAGTCAAAA GACCCTGCC TGGTCG GGCAGGGCC TGCCACGTCTGACTC bioA 1623718 - 1622255 - | adenosylmethionine-8-amino-7-oxononanoate transaminase bioB 1623721 - 1624809 + | biotin synthase TERM 1859 1625536 - 1625548 + G 73 -6.9 -4.36914 | TTGGCAAGGCGCTTG GCGTC GCT GGCGC TTTTGTCGGCGGCAG bioF 1624806 - 1626002 + | 8-amino-7-oxononanoate synthase TERM 1860 1625987 - 1626005 + F 80 -8.8 -4.08767 | opp_overlap 1625982 TGACGAGAGAGGGGG CGCCCATG GTG CATGAGCG TTTTCAGGCGGTCGA bioC 1625992 - 1626795 + | biotin biosynthesis protein BioC TERM 1861 1626858 - 1626825 - f 81 -11.7 -3.46511 | gap 1, opp_overlap 1626847 CGAGAGAATTGAGAA GCCGCTGC-CGGCC ATTGCGA GCCCGGGCAGCGGC CCCGTATTGAGGAGT TERM 1862 1627457 - 1627477 + G 95 -10.3 -4.66609 | AATCTGGACACCCTG CGGGGCTTG CTG CCGGCCCCG TTTTTGGGTGAAATA bioD 1626878 - 1627558 + | dethiobiotin synthase htpX 1627671 - 1628543 + | M48B family peptidase HtpX TERM 1863 1628550 - 1628597 + T 90 -16.4 -2.75963 | opp_overlap 1628564, overlap 1628559 1628564 CGCGGTTAAGCGTAC CGTACCAATGAAAACGGCTGCC CTCG GGCAGCCGTTTTGCTTTGTGCG CTTTGCGCTACAGCT TERM 1864 1628559 - 1628588 + T 86 -15.1 -2.9665 | opp_overlap 1628564, overlap 1628550 1628564 GCGTACCGTACCAAT GAAAACGGCTGCC CTCG GGCAGCCGTTTTG CTTTGTGCGCTTTGC TERM 1865 1628564 - 1628583 + T 100 -15 -4.61873 | opp_overlap 1628564, overlap 1628559 1628550 CCGTACCAATGAAAA CGGCTGCC CTCG GGCAGCCG TTTTGCTTTGTGCGC TERM 1866 1628583 - 1628564 - T 100 -15 -4.45544 | opp_overlap 1628564 1628559 1628550 CCGTACCAATGAAAA CGGCTGCC CTCG GGCAGCCG TTTTGCTTTGTGCGC AHA_1494 1630317 - 1628605 - | methyl-accepting chemotaxis protein TERM 1867 1629775 - 1629802 + g 83 -9.2 -4.3534 | gap 1 CTTGTTCTGGTGATA GGCC-TTGTCATG CAT CATGGCGATGGCC TTTTGCTGGTTGGCG TERM 1868 1630371 - 1630387 + r 74 -2.1 -5.00467 | opp_overlap 1630370 GTCAGACGGCAAAGG CCGCTAC GTC GGAGGGG TTTTGTTGTTGTTGC TERM 1869 1630514 - 1630491 - R 100 -17.4 -4.48877 | opp_overlap 1630505 1630506 GAAACAGGGAGAAAA CGGCCGGGAG CGGG CCCCCGGCCG GTGGGGTTATCGCTG AHA_1495 1632528 - 1630540 - | flavodoxin reductase family 1 protein TERM 1870 1633141 - 1633153 + G 71 -6.2 -4.33417 | overlap 1633138 CTGGTGATCGGTGCC GGCC CCTCC GGCC TTTCTTGTGCCTGGC AHA_1496 1632745 - 1634391 + | putative glutamate synthase (NADPH) small subunit TERM 1871 1634862 - 1634884 + G 71 -9 -3.77607 | TTGGTCGCCCACAGC GTCACCCTGC AGT GCCGGGTGCC TTTCATCCACTTCTT TERM 1872 1636284 - 1636313 + G 71 -8.5 -3.86015 | gap 1, opp_overlap 1636276 1636273, overlap 1636284 CAGACCAGCGATTAT C-CGCTGCCGCTGG CGC CGGGTGGCAGCGAG TTTGTCCAGCGCGTC TERM 1873 1637717 - 1637691 - g 78 -5.1 -4.7497 | overlap 1637692 CTGACCCAGCAAAAA CGCGCC-GTGGCC TCC GGTCACTGGC-CG CTGATGCGCTACAAC nifJ-1 1634388 - 1637963 + | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 1874 1638012 - 1637988 - T 88 -9.9 -4.386 | opp_overlap 1637992, overlap 1637992 TAACTCTGCATAAAA CGAAGCGGGCC ACT GGCCCGCTTTT TATCAATAGATGGGA TERM 1875 1637992 - 1638008 + T 100 -15.1 -4.88067 | opp_overlap 1637988 1637992 TCTGCATAAAACGAA GCGGGCC ACT GGCCCGC TTTTTATCAATAGAT TERM 1876 1638008 - 1637992 - T 95 -15.1 -3.75115 | opp_overlap 1637992, overlap 1637988 TCTGCATAAAACGAA GCGGGCC ACT GGCCCGC TTTTTATCAATAGAT TERM 1877 1639441 - 1639469 + T 100 -19.1 -3.38564 | opp_overlap 1639446, overlap 1639446 ATTTTCGTATAGGTA TCAAATACCGCCA TCT TGGCGGTATTTGA TTATCAGTAGGTTTA TERM 1878 1639446 - 1639464 + T 100 -13.2 -4.00868 | opp_overlap 1639446, overlap 1639441 CGTATAGGTATCAAA TACCGCCA TCT TGGCGGTA TTTGATTATCAGTAG TERM 1879 1639464 - 1639446 - T 93 -13.2 -3.78022 | opp_overlap 1639446 1639441 CGTATAGGTATCAAA TACCGCCA TCT TGGCGGTA TTTGATTATCAGTAG TERM 1880 1639743 - 1639725 - T 100 -13.1 -5.06816 | AGCGGCCAACAAAAA GCCCGGC GTTGG GCCGGGC TGGCAGGATAAGTTG AHA_1498 1639999 - 1639784 - | hypothetical protein TERM 1881 1640263 - 1640249 - R 90 -8.5 -4.72272 | opp_overlap 1640249 GGCGGGCAGCAAAAA GGGGC GCAGG GCCCC TTCTTGGTAACAGGT AHA_1499 1640876 - 1640286 - | hypothetical protein AHA_1500 1642234 - 1640888 - | Na+ driven multidrug efflux pump TERM 1882 1642376 - 1642343 - R 100 -23.2 -2.93207 | overlap 1642332 AAGAGGAGGCAGAGA GCGCGGGCCCTGCC ACCATG GGCAGGGCCCGCAC TGGATCAGGCCGGGG AHA_1501 1644204 - 1642381 - | sulfate permease family protein AHA_1502 1644895 - 1644275 - | hypothetical protein AHA_1503 1645142 - 1644885 - | hypothetical protein cysM 1645277 - 1646182 + | cysteine synthase B AHA_1505 1646348 - 1646629 + | hypothetical protein TERM 1883 1646656 - 1646632 - T 100 -17.1 -3.03441 | opp_overlap 1646627 1646633 1646635, overlap 1646635 CATCAGCTGGTAACA GGAGGCCCCGC GAT GCGGGGCCTCT GTCTGATTACTCCCA TERM 1884 1646633 - 1646655 + T 100 -20.6 -3.02096 | opp_overlap 1646632 1646635, overlap 1646627 1646635 ATCAGCTGGTAACAG GAGGCCCCGC GAT GCGGGGCCTC TGTCTGATTACTCCC TERM 1885 1646635 - 1646653 + T 100 -17.4 -3.06361 | opp_overlap 1646632 1646635, overlap 1646633 1646627 CAGCTGGTAACAGGA GGCCCCGC GAT GCGGGGCC TCTGTCTGATTACTC TERM 1886 1646653 - 1646635 - T 91 -17.4 -2.74192 | opp_overlap 1646635 1646633 1646627, overlap 1646632 CAGCTGGTAACAGGA GGCCCCGC GAT GCGGGGCC TCTGTCTGATTACTC AHA_1506 1647847 - 1646663 - | NAD-dependent methanol dehydrogenase AHA_1507 1648380 - 1647865 - | hypothetical protein AHA_1508 1648963 - 1648361 - | TetR family transcriptional regulator AHA_1509 1650404 - 1648974 - | coniferyl aldehyde dehydrogenase TERM 1887 1650709 - 1650732 + G 93 -8.1 -5.00884 | opp_overlap 1650708 1650709 GAATTTGCCCAGAAG CTGGCGCTG CAGCAT CAGCGCGAG TTTTTTGCCGCGGGT AHA_1510 1650616 - 1650909 + | hypothetical protein TERM 1888 1650930 - 1650956 + T 100 -22.4 -4.38712 | opp_overlap 1650930 1650933 CCGTTGAATCAACAA CAACAGGGCCCG TCG CGGGCCCTGTTG TTTTATGGCGGTCAC TERM 1889 1650956 - 1650930 - T 100 -22.4 -3.81146 | opp_overlap 1650930, overlap 1650933 CCGTTGAATCAACAA CAACAGGGCCCG TCG CGGGCCCTGTTG TTTTATGGCGGTCAC TERM 1890 1650953 - 1650933 - T 100 -18.3 -4.0342 | opp_overlap 1650930, overlap 1650930 TTGAATCAACAACAA CAGGGCCCG TCG CGGGCCCTG TTGTTTTATGGCGGT AHA_1511 1651417 - 1650968 - | NlpC TERM 1891 1651737 - 1651720 - H 70 -5.5 -4.49556 | GTGCCATCAAATAAA TGGCAAG GGAC CCCGCCA TTTTCACCGCCAATA AHA_1512 1652272 - 1654137 + | hemolysin TERM 1892 1654168 - 1654185 + T 100 -14.1 -5.28778 | opp_overlap 1654168 CGGCCAAGACAACAA CGCCGGC AAGT GCCGGCG TTTTTTATGGATGGT TERM 1893 1654185 - 1654168 - T 100 -14.1 -3.9644 | opp_overlap 1654168 CGGCCAAGACAACAA CGCCGGC AAGT GCCGGCG TTTTTTATGGATGGT AHA_1513 1655112 - 1654204 - | hydrogen peroxide-inducible genes activator TERM 1894 1654660 - 1654639 - G 70 -10.1 -3.64703 | opp_overlap 1654656 CGTCTTGCAGTGAAA GCCGCCGAT CTCC ACCGGCAGC GCCAGGATCAGCAGG TERM 1895 1654686 - 1654708 + g 70 -12 -3.24456 | overlap 1654656 GCAGGTCGAGCTGAC CCTGCTCCAG CTG CTTGAGCAGG TTGGTGGTGGTGTCT TERM 1896 1655810 - 1655799 - g 85 -3.6 -5.30575 | GAAAAAGGCAAAAAA GGCA TGAC CGCC TCTCCGGACGGCGTT AHA_1514 1655259 - 1655861 + | alkyl hydroperoxide reductase TsaA TERM 1897 1655907 - 1655890 - T 100 -11.3 -4.70659 | opp_overlap 1655890 CCGGATAGTGAAAAA CCGATGC CCAG GCATCGG TTTTTTTATGGCTGT TERM 1898 1655890 - 1655907 + T 100 -11.3 -5.65177 | opp_overlap 1655890 CCGGATAGTGAAAAA CCGATGC CCAG GCATCGG TTTTTTTATGGCTGT TERM 1899 1655960 - 1655943 - T 100 -14.1 -5.28176 | opp_overlap 1655943 GGCAGGCATAAAAAA GCGCGCC CTTT GGCGCGC TTTGGTCATGGGTGT TERM 1900 1655943 - 1655960 + T 100 -14.1 -3.80014 | opp_overlap 1655943 GGCAGGCATAAAAAA GCGCGCC CTTT GGCGCGC TTTGGTCATGGGTGT AHA_1515 1656946 - 1655981 - | putative alpha-L-glutamate ligase-like protein TERM 1901 1656668 - 1656686 + g 70 -11.6 -3.14132 | CAGGATCCCCTTGCC GCCGGAGC CAC GCGCCGGC TTGATGCAGAAGCCC AHA_1516 1658488 - 1656950 - | gonadoliberin III-related protein TERM 1902 1658299 - 1658283 - G 73 -10.8 -3.58343 | TTCATCAGGGTGAAA CCGGGC TGGGT GCCCGG AATAGCCAGGGAGGC AHA_1517 1659208 - 1658492 - | ATP-dependent Zn proteases AHA_1518 1660364 - 1659333 - | methyltransferase, putative TERM 1903 1660185 - 1660209 + gr 73 -10.7 -3.44051 | GTTGAGGGCGCGGTT CCAGCGCGG CAGATCA CCGTGCTGG TTGTCGTGCTGCCAG AHA_1519 1661056 - 1660307 - | putative methyltransferase TERM 1904 1661072 - 1661093 + r 78 -5.8 -4.72029 | GCTGGCGCAACCTGA CAGCCGGT GCGCGA ACCGACTG TTTTGTTCAATTGAA AHA_1520 1662298 - 1661450 - | hypothetical protein TERM 1905 1661889 - 1661871 - G 76 -8.8 -4.15044 | CCCTTGGCGAAGAAA TCGGGGTG GCG CACCTCGA GGGCATAGCGAAACG aspS 1662491 - 1664497 + | aspartyl-tRNA synthetase TERM 1906 1664533 - 1664516 - f 86 -12.7 -3.73775 | opp_overlap 1664516 GTTACCGGCAGCAAA GGCCGCA GCAA TGCGGCC TTTCCCTTGCATTAG TERM 1907 1664516 - 1664533 + F 90 -12.7 -3.78409 | opp_overlap 1664516 GTTACCGGCAGCAAA GGCCGCA GCAA TGCGGCC TTTCCCTTGCATTAG TERM 1908 1664640 - 1664626 - g 74 -9.2 -3.92324 | overlap 1664629 TGGGCCAACATCAAA CACCGC AAG GCGGCG CAAGACGCCAAGCGC AHA_1522 1664593 - 1665333 + | hypothetical protein TERM 1909 1665401 - 1665384 - f 95 -12.7 -4.07568 | opp_overlap 1665384 TCGCCCCCGTTAAAA CGGCAGC CTCG GCTGCCG TTTTTCTTGTGATGG TERM 1910 1665384 - 1665401 + F 100 -12.7 -5.22006 | opp_overlap 1665384 TCGCCCCCGTTAAAA CGGCAGC CTCG GCTGCCG TTTTTCTTGTGATGG AHA_1523 1665616 - 1667232 + | integral membrane protein TERM 1911 1667444 - 1667426 - T 100 -16 -5.14163 | opp_overlap 1667426 ATCTATCAATAAAAA CGGCAGCC ACT GGCTGCCG TTTTTTATTTCGCAA TERM 1912 1667426 - 1667444 + T 100 -16 -5.63517 | opp_overlap 1667426 ATCTATCAATAAAAA CGGCAGCC ACT GGCTGCCG TTTTTTATTTCGCAA nagC 1668747 - 1667470 - | N-acetylglucosamine repressor nagA 1669834 - 1668689 - | N-acetylglucosamine-6-phosphate deacetylase nagB 1670644 - 1669844 - | glucosamine-6-phosphate deaminase nagE 1670918 - 1672372 + | pts system, N-acetylglucosamine-specific IIBC component TERM 1913 1672440 - 1672422 - f 100 -17.4 -3.49618 | TGTTGACATAACTAA GGGCCCCG CCT CGGGGCCC CATATAAAAAAAGCC AHA_1528 1672495 - 1675158 + | chitobiase TERM 1914 1675181 - 1675200 + F 77 -11.4 -3.53091 | opp_overlap 1675181 1675177 1675176 1675195, overlap 1675199 CAATCCATAACGCAA GGTGGGTC GCAA GACCCGCC TTTCCCAAGCCCGAT TERM 1915 1675241 - 1675195 - f 91 -15.2 -3.01791 | opp_overlap 1675181 1675199, overlap 1675181 1675177 1675176 AGGTGGGTCGCAAGA CCCGCCTTTCCCAAGCCCGATA ACG CATCGGCCTTGGGAAAGGTTGA CTGTGAGTGTGAGCC TERM 1916 1675199 - 1675237 + F 100 -20.5 -3.14026 | opp_overlap 1675181 1675177 1675176 1675195, overlap 1675181 GGGTCGCAAGACCCG CCTTTCCCAAGCCCGAT AACGC ATCGGCCTTGGGAAAGG TTGACTGTGAGTGTG TERM 1917 1675303 - 1675323 + F 100 -8.2 -5.53991 | overlap 1675305 TTTTTCATCACCTTG AACCCCGC CTCGC GCGGGGTC TTTTTTTCGTCAGTC TERM 1918 1675305 - 1675321 + F 93 -10.8 -4.40552 | overlap 1675303 TTTCATCACCTTGAA CCCCGC CTCGC GCGGGG TCTTTTTTTCGTCAG glnS 1675508 - 1677169 + | glutaminyl-tRNA synthetase TERM 1919 1677198 - 1677181 - T 75 -12.7 -2.66991 | opp_overlap 1677181, overlap 1677180 1677178 CTGATAACAGAAGAG GGCAGGG GAGA CCCTGCC TTTTCTTGATCACGA TERM 1920 1677181 - 1677198 + T 100 -12.7 -4.71426 | opp_overlap 1677181 1677180 1677178 CTGATAACAGAAGAG GGCAGGG GAGA CCCTGCC TTTTCTTGATCACGA TERM 1921 1677250 - 1677289 + T 75 -12.4 -2.9914 | gap 1, opp_overlap 1677261, overlap 1677261 GGGCTCTAAATGACG GACA-CAAAAAAGCCAGCG TGA TGCTGGCTTTTTTATTGTC TCTATCTGGCGGGTC TERM 1922 1677277 - 1677261 - T 100 -9.4 -5.38047 | opp_overlap 1677250 1677261 GACGGACACAAAAAA GCCAGC GTGAT GCTGGC TTTTTTATTGTCTCT TERM 1923 1677261 - 1677277 + T 100 -10.1 -5.62045 | opp_overlap 1677261, overlap 1677250 GACGGACACAAAAAA GCCAGCG TGA TGCTGGC TTTTTTATTGTCTCT fur 1677731 - 1677303 - | ferric uptake regulation protein AHA_1531 1677967 - 1678458 + | hypothetical protein TERM 1924 1678495 - 1678468 - T 100 -20 -4.43844 | opp_overlap 1678471 1678474 GCATGAGCCAGAAAA CAACAAGGGCCC CGCG GGGCCCTTGTTG TCAGAGAGGCTGGCG TERM 1925 1678471 - 1678492 + T 100 -15.9 -3.28924 | opp_overlap 1678468, overlap 1678474 TGAGCCAGAAAACAA CAAGGGCCC CGCG GGGCCCTTG TTGTCAGAGAGGCTG TERM 1926 1678474 - 1678489 + T 86 -11.8 -3.78934 | opp_overlap 1678468, overlap 1678471 GCCAGAAAACAACAA GGGCCC CGCG GGGCCC TTGTTGTCAGAGAGG AHA_1532 1679043 - 1678519 - | flavodoxin AHA_1533 1679379 - 1679083 - | LexA regulated protein AHA_1534 1679621 - 1679400 - | hypothetical protein AHA_1535 1680447 - 1679677 - | esterase YbfF AHA_1536 1680556 - 1681248 + | SeqA protein TERM 1927 1681522 - 1681548 + G 74 -9.3 -3.87994 | CTGGTGGAGTATCGC CAGCAGGCCGG CATCA CGGGCCCGCTG TTTGTCGGCATGGAT pgm 1681306 - 1682955 + | phosphoglucomutase TERM 1928 1682973 - 1683019 + T 100 -17.5 -3.17194 | opp_overlap 1682986, overlap 1682986 TCGACTCAAGCACCC GCGGAATATGAAAGAGGAGCC TTGAT GGCTCCTCTTTTTTATTGCGC TTGAGTTGGAGCCGT TERM 1929 1682986 - 1683006 + T 100 -12.6 -5.4756 | opp_overlap 1682986, overlap 1682973 CCGCGGAATATGAAA GAGGAGCC TTGAT GGCTCCTC TTTTTTATTGCGCTT TERM 1930 1683006 - 1682986 - T 93 -12.6 -3.92324 | opp_overlap 1682973 1682986 CCGCGGAATATGAAA GAGGAGCC TTGAT GGCTCCTC TTTTTTATTGCGCTT AHA_1538 1683921 - 1683040 - | drug/metabolite exporter family transporter AHA_1539 1684018 - 1684500 + | MarR family transcriptional regulator AHA_1540 1685235 - 1684525 - | transcriptional regulator, TetR family protein TERM 1931 1685305 - 1685273 - gR 75 -12.8 -2.66692 | gap 1, overlap 1685272 1685275 TACGATGAGCAGAAG CAGCGCCAGGTACCG GCCC CGGTA-CTGGCCCTG ATGGAGGAGGCGACC AHA_1541 1685228 - 1685893 + | AhpC/Tsa family protein TERM 1932 1685923 - 1685895 - TR 81 -11.8 -3.59979 | gap 1, opp_overlap 1685895, overlap 1685896 1685899 CGGGGGCACTGTAAA CGCACACTGCACC CGAA GGCGCAGTGTG-G ATGGTTGGCAAGGCG TERM 1933 1685923 - 1685896 - TR 72 -12 -2.75844 | opp_overlap 1685895, overlap 1685895 1685899 GGGGGCACTGTAAAC GCACACTGCACC CGAA GGCGCAGTGTGG ATGGTTGGCAAGGCG TERM 1934 1685920 - 1685899 - TR 72 -12.3 -2.65354 | opp_overlap 1685895, overlap 1685895 1685896 GGCACTGTAAACGCA CACTGCACC CGAA GGCGCAGTG TGGATGGTTGGCAAG TERM 1935 1685935 - 1685953 + Tr 100 -17.4 -5.24129 | GTGGATGGTTGGCAA GGCGGCCC TGA GGGCCGCC TTTTTTATCCGGCCG mltB-1 1687074 - 1685971 - | murein hydrolase B AHA_1543 1687772 - 1687170 - | phosphatidylglycerophosphate synthase AHA_1544 1688425 - 1687787 - | ABC transporter, ATP-binding protein AHA_1545 1690125 - 1688449 - | inner membrane ABC transporter permease protein YnjC TERM 1936 1690077 - 1690062 - G 74 -4.6 -4.66833 | overlap 1690063 1690065 1690066 GCGGAAGGCCAAAAA CCAGGG CGCA CCCTGC CGTGAACAGGGGGCG TERM 1937 1690094 - 1690066 - G 74 -14.5 -2.55019 | overlap 1690063 1690062 1690065 AAGGCCAAAAACCAG GGCGCACCCTGCC GTG AACAGGGGGCGCC AATCAAGCGAAGAGC AHA_1546 1691405 - 1690125 - | hypothetical protein TERM 1938 1690944 - 1690926 - GR 74 -10.2 -3.53224 | opp_overlap 1690937 CAGCTCCCGGGTAAA GGGGGTGC CGA GCAGCCCC TGCTCCTTGAGCGCC AHA_1547 1693483 - 1691315 - | mercuric reductase, membrane-associated TERM 1939 1691648 - 1691681 + gr 70 -8.7 -3.6217 | overlap 1691647 GGCCAGCTCGAAGCG GGTCAGCTCGAAGGG GATG CCCTGCGCCCTGGCC TCTTTCTGATTGAGG TERM 1940 1692426 - 1692448 + gr 76 -12 -3.06796 | ACCTCCACCTCCCAG GGGGAGACAA GCT TTGCCTCCCC TTGGATGCACTCCAC TERM 1941 1693250 - 1693237 - GR 71 -9.5 -3.48924 | overlap 1693246 GCAGCCCCCAGACAA CGCCG AACA CGGCG CTGCCAGCCAGGGTG TERM 1942 1693460 - 1693430 - GR 87 -8.3 -4.66833 | gap 1, opp_overlap 1693456 GTCGAAGGCGAAAAA GGCGCCGATGA-GG CAGC CCATCACCAGCACC AGCAGCAGGCGGGAG pcaC 1694064 - 1693483 - | hypothetical protein AHA_1549 1694750 - 1694076 - | hypothetical protein TERM 1943 1695288 - 1695301 + G 79 -8.1 -4.34267 | GAGGACTGGGCGGCG CGCCA TCCC TGGCG TTTTGGCTTCTATGC AHA_1550 1694802 - 1695362 + | peptide methionine sulfoxide reductase MsrA AHA_1551 1695655 - 1695377 - | peptidyl-prolyl cis-trans isomerase C AHA_1552 1696111 - 1695737 - | hypothetical protein TERM 1944 1697150 - 1697136 - g 71 -11.4 -3.53343 | AAGCTGCCGCTGAAA GAGGGG GAT CCCCTC AACCACGGTAAATAC AHA_1553 1696686 - 1698461 + | OMP85 family outer membrane protein AHA_1554 1698541 - 1702296 + | hypothetical protein TERM 1945 1702344 - 1702309 - f 93 -15.6 -3.1372 | opp_overlap 1702317, overlap 1702317 TAGCGGGCAGGAAGA GACAAAAACGGGAGGC ACAA GCCTCCCGTTTTTATT GGTGGCATTGATGCG TERM 1946 1702317 - 1702336 + F 100 -15 -5.1356 | opp_overlap 1702309 1702317 AGGAAGAGACAAAAA CGGGAGGC ACAA GCCTCCCG TTTTTATTGGTGGCA TERM 1947 1702336 - 1702317 - f 100 -15 -5.10968 | opp_overlap 1702317, overlap 1702309 AGGAAGAGACAAAAA CGGGAGGC ACAA GCCTCCCG TTTTTATTGGTGGCA TERM 1948 1702430 - 1702402 - f 84 -13.2 -3.06515 | opp_overlap 1702403 1702408, overlap 1702408 GGGGATGCTGAAAAG CGAAAACCCGGC GCGAG GCCGGGTTTTCT TGAATGATGGTGGAG TERM 1949 1702403 - 1702429 + F 100 -16.7 -3.10715 | opp_overlap 1702402 1702408, overlap 1702408 GGGATGCTGAAAAGC GAAAACCCGGC GCGAG GCCGGGTTTTC TTGAATGATGGTGGA TERM 1950 1702408 - 1702424 + F 100 -10.8 -4.69053 | opp_overlap 1702402 1702408, overlap 1702403 GCTGAAAAGCGAAAA CCCGGC GCGAG GCCGGG TTTTCTTGAATGATG TERM 1951 1702424 - 1702408 - f 93 -10.8 -4.4267 | opp_overlap 1702408 1702403, overlap 1702402 GCTGAAAAGCGAAAA CCCGGC GCGAG GCCGGG TTTTCTTGAATGATG AHA_1557 1702784 - 1703299 + | hypothetical protein TERM 1952 1703349 - 1703333 - T 100 -10.8 -4.72272 | opp_overlap 1703333 TTCGGGCAGCAAAAA GGCGGG GAGAT CCCGCC TTTGTCGTTGTTGGC TERM 1953 1703333 - 1703349 + T 88 -11.5 -4.14257 | opp_overlap 1703333 TTCGGGCAGCAAAAA GGCGGGG AGA TCCCGCC TTTGTCGTTGTTGGC yfiA-1 1703719 - 1703381 - | ribosomal subunit interface protein TERM 1954 1703467 - 1703480 + g 73 -8.1 -4.09739 | CGGTGTGGCGGTTGA GCTGG CGTT CCAGC TTTTGCCCCAGTTCG AHA_1559 1704091 - 1706607 + | MorA TERM 1955 1706664 - 1706645 - f 86 -15 -2.92522 | opp_overlap 1706643, overlap 1706640 1706630 TGAGGGAATATGACA CCACCGCC AACG GGCGGTGG CATTGCCTCTCAATG TERM 1956 1706806 - 1706825 + G 78 -10 -4.09739 | gap 1 GCTTATGACGCGGTG CGGGCC-GA CGA TCAGGCCCG TTTTCAGCAAATTCG TERM 1957 1708064 - 1708048 - g 70 -12.3 -3.14344 | opp_overlap 1708036 CAGGGCTGGCATGAA CTGGCCA TTC TGGCCAG CATCCGGGCCGAGGC slt 1706692 - 1708608 + | soluble lytic murein transglycosylase AHA_1561 1708788 - 1709786 + | HTH-type transcriptional regulator GalR TERM 1958 1709783 - 1709828 + F 86 -10.4 -4.08064 | gap 1, overlap 1709787 1709787 ACGGGAATCCGTCGC CTGAGTGGCCGACATTGGCCC TGAAT GGGCCAATGTC-GCTCCCCTG TTTTGCGGAAAAATT TERM 1959 1709787 - 1709825 + F 83 -15.3 -2.78032 | overlap 1709783 1709787 GAATCCGTCGCCTGA GTGGCCGACATTGGCCC TGAAT GGGCCAATGTCGCTCCC CTGTTTTGCGGAAAA TERM 1960 1709787 - 1709826 + F 86 -12.9 -3.63744 | gap 1, overlap 1709787 1709783 GAATCCGTCGCCTGA GTGG-CCGACATTGGCCC TGAAT GGGCCAATGTCGCTCCCC TGTTTTGCGGAAAAA TERM 1961 1710003 - 1710021 + F 100 -11 -6.06723 | CTTCGTTACTTTCGA CGGTCATC ATG GATGGCCG TTTTTTTTTGCCAGG AHA_1562 1710045 - 1710857 + | NAD dependent epimerase/dehydratase family protein AHA_1563 1710900 - 1711382 + | acyl-CoA thioester hydrolase YciA AHA_1564 1711679 - 1711389 - | hypothetical protein TERM 1962 1712113 - 1712123 + G 73 -8.2 -4.0371 | opp_overlap 1712113 TGACGGTCGCCAAGA CGCC CCA GGCG TTTGTGTGCGGCGTG AHA_1565 1711725 - 1712570 + | endonuclease/exonuclease/phosphatase family protein TERM 1963 1712633 - 1712613 - T 100 -12.6 -5.71712 | opp_overlap 1712613 TTCCAGATAAAAAAA TACCCCGC TTTTG GCGGGGTA TTTTTTTATGAAGTG TERM 1964 1712613 - 1712633 + T 100 -13.3 -5.626 | opp_overlap 1712613 TTCCAGATAAAAAAA TACCCCGCT TTT GGCGGGGTA TTTTTTTATGAAGTG TERM 1965 1712698 - 1712678 - T 72 -11.1 -3.14132 | overlap 1712680 GTTGTTCTTCACGAA CAGGGTCAG TTC CTGACCCGG CTTGAGGTAATCGCT TERM 1966 1712696 - 1712680 - T 76 -12.3 -3.13403 | overlap 1712678 TGTTCTTCACGAACA GGGTCAG TTC CTGACCC GGCTTGAGGTAATCG AHA_1566 1714204 - 1712657 - | membrane-bound lytic murein transglycosylase D TERM 1967 1714259 - 1714246 - R 70 -9.5 -3.4072 | CAGCTCGCATCATAA GGGGC AATG GCCCC CTGATCAAGGTTTGT TERM 1968 1714298 - 1714283 - R 77 -4 -5.00616 | gap 1, overlap 1714285 GGTTTGTTCAAAAAA CG-TCCT TCC AGGATCG CAGCACGGTGAAGGT AHA_1567 1715039 - 1714275 - | hydroxyacylglutathione hydrolase AHA_1569 1715099 - 1715833 + | methyltransferase rnhA 1716285 - 1715821 - | RNase H dnaQ 1716338 - 1717072 + | DNA polymerase III, epsilon subunit TERM 1969 1718171 - 1718149 - g 86 -7.7 -4.75404 | AAATTCGAGGAAAAA CAGAGCAGC GGCTG GCTGATCTG GCTGCTGGGTGGGGT AHA_1571 1717069 - 1718334 + | hypothetical protein TERM 1970 1718355 - 1718372 + T 91 -9.8 -4.63048 | opp_overlap 1718355 CAACCGCACGAAAAA GCCGCC CATCGA GGCGGC TTTGTTATTTATGGG TERM 1971 1718372 - 1718355 - T 100 -10.5 -4.74801 | opp_overlap 1718355 CAACCGCACGAAAAA GCCGCCC ATCG AGGCGGC TTTGTTATTTATGGG AHA_1572 1719933 - 1718416 - | HD domain-containing protein TERM 1972 1720061 - 1720079 + r 83 -11.7 -3.75937 | opp_overlap 1720061 AGCCCCATAAAAAAA CGCCTCC ACATG GGAGGCG TTTGACTATCTATGT TERM 1973 1720079 - 1720061 - R 100 -11.7 -5.61596 | opp_overlap 1720061 AGCCCCATAAAAAAA CGCCTCC ACATG GGAGGCG TTTGACTATCTATGT fadE 1722556 - 1720100 - | acyl-CoA dehydrogenase gmhA 1722801 - 1723379 + | phosphoheptose isomerase TERM 1974 1723901 - 1723864 - g 91 -15.5 -3.86897 | TTGACGGGTTACAAA GGGTTGGCCACCGGTCG CCAT CGACCGGTGGGCGACAC CGACAGCGAACACGC AHA_1575 1723519 - 1724298 + | glutamine amidotransferases class-II TERM 1975 1724351 - 1724326 - f 100 -11.9 -5.76633 | opp_overlap 1724328, overlap 1724328 CCAGAGATAAAAAAA TACCAGGGTAG AATC CTACCCTGGTT CTTCGCAGCAGCCAT TERM 1976 1724328 - 1724349 + F 95 -14.5 -3.61398 | opp_overlap 1724326 1724328 AGAGATAAAAAAATA CCAGGGTAG AATC CTACCCTGG TTCTTCGCAGCAGCC TERM 1977 1724349 - 1724328 - f 100 -14.5 -4.51477 | opp_overlap 1724328, overlap 1724326 AGAGATAAAAAAATA CCAGGGTAG AATC CTACCCTGG TTCTTCGCAGCAGCC AHA_1576 1724620 - 1724955 + | Hpt domain-containing protein AHA_1577 1725918 - 1725007 - | hypothetical protein AHA_1578 1726032 - 1727216 + | hypothetical protein AHA_1579 1727358 - 1729331 + | sensor protein LuxQ TERM 1978 1729338 - 1729360 + T 72 -12.1 -2.77013 | opp_overlap 1729338, overlap 1729337 CGCAGCTAAAAAAAA TGGTCAACC TGGGT GGTTGACCA ATTCTTCAGCAAATA TERM 1979 1729360 - 1729338 - T 100 -12.1 -5.81412 | opp_overlap 1729338 1729337 CGCAGCTAAAAAAAA TGGTCAACC TGGGT GGTTGACCA ATTCTTCAGCAAATA TERM 1980 1729434 - 1729424 - T 70 -3.2 -4.80882 | ATTCTATATGAAAAA GTCG TGC CAAC TTTTCAGAACCAGTT AHA_1580 1730134 - 1729559 - | ATP-dependent protease La TERM 1981 1729945 - 1729977 + g 82 -15 -3.3676 | gap 1 CTTTGACCCGGGTGC CGACTGGCAGGATCC GCCC GGA-CTTGCCAGTCG TTGTCGCCTCTTCCA TERM 1982 1730223 - 1730194 - R 78 -13.7 -2.68942 | opp_overlap 1730201, overlap 1730201 ACTGTGCCAGAGAAT GAAAAAAGCCACC GGAA GGTGGCTTTTTGC TGGATGGGAGGGCGT TERM 1983 1730201 - 1730216 + r 100 -10.4 -4.7497 | opp_overlap 1730194 1730201 CAGAGAATGAAAAAA GCCACC GGAA GGTGGC TTTTTGCTGGATGGG TERM 1984 1730216 - 1730201 - R 100 -10.4 -5.35354 | opp_overlap 1730201, overlap 1730194 CAGAGAATGAAAAAA GCCACC GGAA GGTGGC TTTTTGCTGGATGGG AHA_1581 1730877 - 1730239 - | LuxR family DNA-binding response regulator narQ 1732589 - 1730877 - | nitrate/nitrite sensor protein NarQ TERM 1985 1732838 - 1732866 + G 72 -7.4 -4.24204 | CGTCGTTTCTACTAT TTGCGCCTGTCG ATCAC CGACGTGTGCAA TTTTCGCTGTACCTA moaA 1732763 - 1733791 + | molybdenum cofactor biosynthesis protein A napF 1734041 - 1734550 + | ferredoxin-type protein NapF napD 1734580 - 1734843 + | NapD protein TERM 1986 1735029 - 1735049 + G 73 -12.5 -3.25223 | opp_overlap 1735021, overlap 1735031 TTATGAAGGCCAACG CGGTGGCGG CAG CCGCTGCCG TTGCTGGTGTCAGTG napA 1734992 - 1737481 + | nitrate reductase AHA_1587 1737498 - 1738232 + | MauM/NapG ferredoxin-type protein AHA_1588 1738229 - 1739104 + | ferredoxin-type protein NapH napB 1739104 - 1739559 + | periplasmic nitrate reductase, diheme cytochrome c subunit AHA_1590 1739571 - 1740161 + | cytochrome c-type protein NapC TERM 1987 1740174 - 1740195 + F 100 -17.3 -3.36273 | TAAGCCCATCTGATG CAGGCCGGG TTCG CCCGGCCTG TTCATATTCCGCCCG moaB 1740424 - 1740930 + | molybdenum cofactor biosynthesis protein B TERM 1988 1741426 - 1741410 - g 80 -5 -4.82901 | opp_overlap 1741410 GCTGGTGGAGAAAAA GGGCGG CAAGT CCGGCC ATTTTCAGCTGGGTG moaC 1740940 - 1741464 + | molybdenum cofactor biosynthesis protein C TERM 1989 1741665 - 1741679 + G 83 -7.8 -4.57073 | ACGCCCCTTCATGAT GGCGAT GAG GTCGCC TTTTTCCCGCCGGTG moaD 1741461 - 1741706 + | molybdopterin synthase small subunit moaE 1741709 - 1742182 + | molybdopterin converting factor, subunit 2 modA 1742285 - 1743013 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 1990 1743041 - 1743065 + F 83 -10 -4.13945 | gap 1 ACACCTACCTGATGA GT-GGCCGGCC CTCG GGTCGGCCCAC TTTTGCGATAAGGAT modB 1743237 - 1743917 + | molybdate ABC transporter, permease protein TERM 1991 1744135 - 1744157 + G 77 -14.8 -2.85069 | opp_overlap 1744116, overlap 1744132 1744130 GCTGAGCGATCTGCT GCCCGAGGCG CGC CGCATCGGGC TGGTGTTTCAGGATT modC 1743914 - 1744990 + | molybdate ABC transporter, ATP-binding protein AHA_1598 1745073 - 1745831 + | alpha/beta fold family hydrolase TERM 1992 1745865 - 1745883 + T 100 -12.4 -5.4505 | opp_overlap 1745865 TGACAGATAAAAAAA GCCGACCT CAT GGGTCGGC TTTTTTGTTGGCGAA TERM 1993 1745883 - 1745865 - T 100 -11.7 -5.76633 | opp_overlap 1745865 TGACAGATAAAAAAA GCCGACC TCATG GGTCGGC TTTTTTGTTGGCGAA moeB 1746672 - 1745917 - | molybdopterin synthase sulfurylase MoeB TERM 1994 1746227 - 1746247 + g 95 -10.3 -4.4078 | overlap 1746198 1746197 GCGCCGCTGACCAGC GGCACGCCG TGC TGGCGGGCC TTTTGGTTGAGCAGG AHA_1600 1747895 - 1746669 - | molybdopterin biosynthesis protein MoeA TERM 1995 1747470 - 1747486 + g 70 -12.3 -3.21276 | overlap 1747469 GCCCTCGCGGATGTC TTCGCCG CGG CGGCGAA TGTTCTGGCCGGGCA folE 1748201 - 1748857 + | GTP cyclohydrolase I TERM 1996 1749692 - 1749652 - g 74 -13.9 -2.83271 | opp_overlap 1749691, overlap 1749649 GGACTGGGACAAGTA CGTCGCCCTGCACCAGCGG GTG CGGCTGATGCAGGATGGCG GCCAGTTGGCGGAGG AHA_1602 1749269 - 1750924 + | methyl-accepting chemotaxis protein TERM 1997 1750980 - 1750949 - T 83 -10.8 -3.97674 | opp_overlap 1750954, overlap 1750954 CCACCAGGCAAATAA CAGAAGGCCCCGCC AATC AGCGGGGCCTTGTT GTTTCTGGCAGGTTT TERM 1998 1750954 - 1750975 + T 100 -14.4 -4.15703 | opp_overlap 1750949 1750954 AGGCAAATAACAGAA GGCCCCGC CAATCA GCGGGGCC TTGTTGTTTCTGGCA TERM 1999 1750975 - 1750954 - T 100 -15.1 -3.91066 | opp_overlap 1750954, overlap 1750949 AGGCAAATAACAGAA GGCCCCGCC AATC AGCGGGGCC TTGTTGTTTCTGGCA AHA_1603 1751171 - 1751058 - | hypothetical protein fhs 1752905 - 1751175 - | formate--tetrahydrofolate ligase TERM 2000 1751661 - 1751619 - G 90 -15.6 -3.73775 | gap 1, overlap 1751644 1751645 TCCACCCTGAGTAAA GGCGCTG-GAGATGGCGCT GCCACA AGCGCCGGCTCGCAGCGCC GCGCGGGCCAGCAGG AHA_1605 1752972 - 1753388 + | hypothetical protein AHA_1606 1754322 - 1753420 - | LysR family transcriptional regulator AHA_1607 1754433 - 1754993 + | small protease TERM 2001 1755023 - 1755042 + G 89 -15 -3.86202 | opp_overlap 1755019 1755018, overlap 1755010 CTGCTGCAAACCCTG GCGGCTCC TTTG GGAGCCGC TTTGCTGTCGTGGCG AHA_1608 1754993 - 1755730 + | hypothetical protein TERM 2002 1755845 - 1755887 + F 86 -12 -3.90744 | opp_overlap 1755854 1755856 1755859, overlap 1755854 GATTTTCAATTATCT GGACACACACAGAACCCGGT CTG ACCGGGTTCTGTTTGCCTGC TTGTTTGCGGCGCGC TERM 2003 1755854 - 1755878 + F 100 -18.7 -3.74658 | opp_overlap 1755854 1755856 1755859, overlap 1755845 TTATCTGGACACACA CAGAACCCGGT CTG ACCGGGTTCTG TTTGCCTGCTTGTTT TERM 2004 1755878 - 1755854 - f 100 -18.7 -2.99471 | opp_overlap 1755854 1755845, overlap 1755856 1755859 TTATCTGGACACACA CAGAACCCGGT CTG ACCGGGTTCTG TTTGCCTGCTTGTTT TERM 2005 1755876 - 1755856 - f 93 -15.5 -3.052 | opp_overlap 1755854 1755845, overlap 1755854 1755859 ATCTGGACACACACA GAACCCGGT CTG ACCGGGTTC TGTTTGCCTGCTTGT TERM 2006 1755873 - 1755859 - f 79 -11.4 -3.66896 | opp_overlap 1755854 1755845, overlap 1755856 1755854 TGGACACACACAGAA CCCGGT CTG ACCGGG TTCTGTTTGCCTGCT TERM 2007 1755914 - 1755943 + F 84 -5.7 -5.07107 | gap 1 GCGCTAAGGAGGCCA CAGTTGCGCAG-TC AAG GATCTGAGCATCTG TTTTTTCGCCATTTC TERM 2008 1757001 - 1757043 + G 100 -11.2 -5.06414 | overlap 1757003 TGCGCACCATTGCCC GCCACTGGCTGGCCGACTTC CAC GGGGTCGCCCAGTGAGTGTC TTTTTCTTAGCCGCC TERM 2009 1757003 - 1757041 + G 86 -12.4 -4.16307 | overlap 1757001 CGCACCATTGCCCGC CACTGGCTGGCCGACTTC CAC GGGGTCGCCCAGTGAGTG TCTTTTTCTTAGCCG AHA_1609 1755917 - 1757038 + | S-adenosyl-L-homocysteine hydrolase NAD binding domain-containing protein AHA_1610 1757076 - 1757387 + | SelT/selW/selH domain-containing protein TERM 2010 1757405 - 1757436 + T 84 -13 -3.35438 | opp_overlap 1757408, overlap 1757408 1757410 CACAGCATCAATGAC AAAGAGAGGGAGGC ACAG GCCTCCCTCTCTCG TTGTGGCGTCTGGTC TERM 2011 1757408 - 1757433 + T 100 -19.1 -2.84298 | opp_overlap 1757408, overlap 1757405 1757410 AGCATCAATGACAAA GAGAGGGAGGC ACAG GCCTCCCTCTC TCGTTGTGGCGTCTG TERM 2012 1757433 - 1757408 - T 100 -19.1 -4.08546 | opp_overlap 1757408 1757405 1757410 AGCATCAATGACAAA GAGAGGGAGGC ACAG GCCTCCCTCTC TCGTTGTGGCGTCTG TERM 2013 1757410 - 1757431 + T 87 -15.9 -2.9675 | opp_overlap 1757408, overlap 1757408 1757405 CATCAATGACAAAGA GAGGGAGGC ACAG GCCTCCCTC TCTCGTTGTGGCGTC AHA_1611 1759174 - 1757450 - | phosphate acyltransferase family protein TERM 2014 1757805 - 1757781 - G 70 -7.9 -4.07687 | overlap 1757795 AGCTCGGGGGCAAAA TGCTGGCGA TAGAAGC TCACCAGCA GATCCTTGGCCGCCG TERM 2015 1759287 - 1759260 - R 100 -20.6 -3.60296 | opp_overlap 1759260 CAGTTTGATGGCAAA GAGGGGAGCCGG TTAA CCGGCCCCCCTC TTGTTGTCATGGCGG TERM 2016 1759260 - 1759287 + r 100 -18.4 -3.84406 | opp_overlap 1759260 CAGTTTGATGGCAAA GAGGGGAGCCGG TTAA CCGGCCCCCCTC TTGTTGTCATGGCGG pepT 1760540 - 1759317 - | peptidase T TERM 2017 1760077 - 1760041 - G 76 -9.3 -4.07568 | TCGTCCGGGGTAAAA CCGACCCAGACATCGCC ACG GGGGATCTCGGGGTGGG CCAGCAGGTGGTCGA TERM 2018 1760169 - 1760181 + g 76 -5.5 -4.56597 | opp_overlap 1760167, overlap 1760168 GGTGGTGATGAGATC CTGCC CCA GGTAG TTTTTCAGGAAGCGG TERM 2019 1760599 - 1760612 + H 71 -4.5 -4.61527 | overlap 1760600 TGGCGGCGCGGCTTT TTGCG TCAG CGCAG TTTTTGCCGCATTTT TERM 2020 1761587 - 1761573 - H 75 -12.8 -2.61274 | opp_overlap 1761573 1761571, overlap 1761572 TTGAGGGTAACGAAG GCGGCC ACC GGCCGC TCATTTGCGAGGCAT TERM 2021 1761573 - 1761587 + H 79 -12.8 -2.90615 | opp_overlap 1761572 1761573, overlap 1761571 TTGAGGGTAACGAAG GCGGCC ACC GGCCGC TCATTTGCGAGGCAT speA 1761608 - 1763509 + | arginine decarboxylase TERM 2022 1763581 - 1763564 - f 100 -14.1 -5.60993 | opp_overlap 1763564 GCGGGCATAAAAAAA CGGCGCC TGCG GGCGCCG TTTTTGTTGCGCATG TERM 2023 1763564 - 1763581 + F 100 -14.1 -5.07486 | opp_overlap 1763564 GCGGGCATAAAAAAA CGGCGCC TGCG GGCGCCG TTTTTGTTGCGCATG AHA_1614 1763792 - 1763980 + | hypothetical protein TERM 2024 1763997 - 1764036 + T 80 -9.2 -4.09822 | gap 1, overlap 1764000 1764001 CTACATTGCCAGCAT TG-CCTGCGGCCATCGGCA GCT TGCCGCTGGCCGCGCTTCA TTTATCTACTCAATT TERM 2025 1764000 - 1764032 + T 100 -15.5 -3.66365 | overlap 1763997 1764001 CATTGCCAGCATTGC CTGCGGCCATCGGCA GCT TGCCGCTGGCCGCGC TTCATTTATCTACTC TERM 2026 1764001 - 1764031 + T 100 -19 -2.79096 | overlap 1764000 1763997 ATTGCCAGCATTGCC TGCGGCCATCGGCA GCT TGCCGCTGGCCGCG CTTCATTTATCTACT AHA_1615 1764446 - 1764129 - | hypothetical protein TERM 2027 1764597 - 1764576 - R 100 -7.2 -5.77853 | overlap 1764577 AATTGGCAAAAAAAA GCCAGCCC GGCAAG GGGCTGGG GTGAGTGACGGGGAC TERM 2028 1764596 - 1764577 - R 83 -10.7 -4.05085 | overlap 1764576 ATTGGCAAAAAAAAG CCAGCCC GGCAAG GGGCTGG GGTGAGTGACGGGGA AHA_1616 1766773 - 1764617 - | methyl-accepting chemotaxis protein TERM 2029 1764883 - 1764936 + g 73 -11 -3.58343 | gap 3 CCAGACCGACCCCCT CCTGCGCCTCGCGGCT-GG-CGGCG GACATGG CGCTGACCGAGGCGCG-GGCGCCGG TTTGCAGCTGCTCGA TERM 2030 1766788 - 1766766 - G 100 -20.6 -4.84017 | AATGGGTCAGAAAAA CGGGCCACCC TCA GGGTGGCCCG TTGCCGATGGGAGAA AHA_1617 1768171 - 1766813 - | inner membrane transport protein YhaO AHA_1618 1768357 - 1768740 + | endoribonuclease L-PSP, putative AHA_1619 1768763 - 1770052 + | hypothetical protein TERM 2031 1770064 - 1770092 + F 71 -10.3 -3.26262 | gap 1, overlap 1770081 CTGAGTGTCCCTGTC GGCTGCC-ACCC TTGCCC GGGTCGGCGGCC CTTTTATAAGGTTTC TERM 2032 1770081 - 1770093 + F 75 -6.9 -4.44974 | overlap 1770064 1770092 CTGCCACCCTTGCCC GGGTC GGC GGCCC TTTTATAAGGTTTCA AHA_1620 1770111 - 1770764 + | MukF protein TERM 2033 1770781 - 1770758 - f 73 -8.8 -3.7732 | gap 1, overlap 1770759 GCGGGAGATCAAGAA GGGCTGAGCGC ATG GCGC-CAGCCA GCATTAACGGGTCAG TERM 2034 1770780 - 1770759 - f 75 -12.3 -2.86071 | gap 1, overlap 1770758 CGGGAGATCAAGAAG GGCTGAGCGC ATG GCGC-CAGCC AGCATTAACGGGTCA TERM 2035 1770789 - 1770806 + F 100 -11.3 -5.55855 | opp_overlap 1770789 GCCAGCCAGCATTAA CGGGTCA GCAT TGACCCG TTTTGTTTTTTTACG TERM 2036 1770806 - 1770789 - f 74 -11.3 -3.22298 | opp_overlap 1770789 GCCAGCCAGCATTAA CGGGTCA GCAT TGACCCG TTTTGTTTTTTTACG AHA_1621 1770909 - 1771496 + | fructose-2;6-bisphosphatase TERM 2037 1771509 - 1771529 + T 100 -18.3 -5.60993 | opp_overlap 1771509 TGACCCCGACGAAAA CGGCTCGCC ATT GGCGAGCCG TTTTTTTATGAGCGC TERM 2038 1771529 - 1771509 - T 100 -18.3 -4.26076 | opp_overlap 1771509 TGACCCCGACGAAAA CGGCTCGCC ATT GGCGAGCCG TTTTTTTATGAGCGC AHA_1622 1772295 - 1771555 - | 5-methylcytosine-specific restriction protein A TERM 2039 1771989 - 1772002 + g 72 -4.5 -4.58283 | overlap 1771990 CTATGATGGGGGCAT TGTGG GGGC CCACG TTTTTAGCCGGCTTG AHA_1623 1772489 - 1772956 + | hypothetical protein AHA_1624 1773110 - 1773478 + | lactoylglutathione lyase family protein AHA_1625 1775185 - 1773602 - | hypothetical protein TERM 2040 1775225 - 1775211 - R 75 -7 -4.42386 | overlap 1775213 1775214 TTGGCACTGATAAAA GAGGGG CGG CCCCGC GTCCACGGCGGCCGT TERM 2041 1775223 - 1775213 - R 71 -8.2 -3.82117 | overlap 1775211 1775214 GGCACTGATAAAAGA GGGG CGG CCCC GCGTCCACGGCGGCC TERM 2042 1775347 - 1775320 - R 100 -17.1 -3.74693 | opp_overlap 1775322 1775324 GTTCATCCGAGCAAA CAGAGGGCAGC TCCGGG GCTGCCCTCTG TGGTAATGCTGTCCG TERM 2043 1775322 - 1775345 + r 83 -14.6 -2.84192 | opp_overlap 1775320, overlap 1775324 TCATCCGAGCAAACA GAGGGCAGCT CCGG GGCTGCCCTC TGTGGTAATGCTGTC TERM 2044 1775324 - 1775343 + r 71 -11.4 -2.96692 | opp_overlap 1775320, overlap 1775322 ATCCGAGCAAACAGA GGGCAGCT CCGG GGCTGCCC TCTGTGGTAATGCTG AHA_1626 1776729 - 1775383 - | glutamate dehydrogenase TERM 2045 1777233 - 1777246 + H 84 -5.9 -5.03314 | GCTTTTTGCCGGACA GGTCG GTAG CGGCC TTTTTTGAAGATGGA AHA_1627 1777267 - 1777359 + | hypothetical protein AHA_1628 1777349 - 1778383 + | 23S rRNA pseudouridine synthase F TERM 2046 1778390 - 1778374 - T 73 -9.3 -3.78934 | TGGGCGGCAGAAGAA GGGGCGC TAA GCCCCCC TCACTCCCCGCGTTG TERM 2047 1778417 - 1778435 + T 100 -16 -5.45802 | opp_overlap 1778417 GTTGACATTAAAAAA CACCGGCC ACA GGCCGGTG TTTTTGTTTTGGCGA TERM 2048 1778435 - 1778417 - T 100 -16 -5.21709 | opp_overlap 1778417 GTTGACATTAAAAAA CACCGGCC ACA GGCCGGTG TTTTTGTTTTGGCGA AHA_1629 1779691 - 1778456 - | cyanate transport protein CynX AHA_1630 1780187 - 1779684 - | cytidine/deoxycytidylate deaminase, zinc-binding region AHA_1631 1780298 - 1781146 + | LysR family transcriptional regulator AHA_1632 1782368 - 1781169 - | MFS family transporter TERM 2049 1781725 - 1781715 - G 90 -8.2 -4.82901 | overlap 1781716 GGCCGGCCAGAAAAA GCCG GGG CGGC GCAGCAGGCTGGCGT TERM 2050 1781774 - 1781716 - G 71 -11 -3.49419 | gap 4, overlap 1781715 GCCGGCCAGAAAAAG CCGG-GGCGGCGCAGCAGGCTGGCGTAACG GGC CCACATGCC-GCC-GCT-CGCCGCCGCCGG GTTGGGCCCCAGCAG TERM 2051 1782416 - 1782374 - R 73 -9.2 -3.8211 | gap 1 GGTTATCCATAACAA CTCTCGGGCAGTA-AGGGA GCCATA TCCTTGCACTGCCCGAGCG CCGAGTCAGCCCCTC AHA_1633 1782947 - 1782480 - | transcriptional regulatory protein AHA_1634 1783143 - 1782988 - | hypothetical protein AHA_1635 1783695 - 1783225 - | cytosolic long-chain acyl-CoA thioester hydrolase family protein AHA_1636 1784027 - 1783716 - | hypothetical protein TERM 2052 1784637 - 1784580 - g 75 -13.4 -3.09327 | overlap 1784556 GTACCTGACCGAACA GGGGCAGAGCGATGCG-GCCCGCTGGAT CGAT ACCGAGCTGGCACGC-CCGCTCGACCCC CACGCCCTGGCGCGA AHA_1637 1784170 - 1784829 + | inner membrane protein YebE TERM 2053 1784853 - 1784881 + F 86 -15.3 -2.95476 | overlap 1784859 AGGGACAAGGATTGT CGATGAGGCCCCG TTA CGGGGCCTTGTTG TGTCTGGTCACTAGT TERM 2054 1784859 - 1784875 + F 100 -15.1 -3.94067 | overlap 1784853 AAGGATTGTCGATGA GGCCCCG TTA CGGGGCC TTGTTGTGTCTGGTC TERM 2055 1785170 - 1785183 + G 74 -5.9 -4.44211 | overlap 1785161 TGCTGGCGGCCATCG CTGCC GAAG GGCGG TTGTTTTGTGTTGCC AHA_1638 1784965 - 1785483 + | putative acetyltransferase TERM 2056 1785517 - 1785533 + T 88 -10.1 -4.49756 | opp_overlap 1785517 1785515, overlap 1785530 ATTTTGCAAGGAACA GGCCTCA TCA TGGGGCC TTTTGGTCTTTGGCG AHA_1639 1786963 - 1785524 - | GntR family transcriptional regulator TERM 2057 1786487 - 1786520 + g 90 -19.5 -2.70932 | CGCCAGCCCCTCGCC GGCGTAGCGCTGGGC GATG GCCCGGCGCAGCGCC TCGTTGCCGGGGGGC AHA_1640 1787084 - 1788655 + | cytochrome D ubiquinol oxidase subunit I TERM 2058 1789055 - 1789068 + G 72 -2.3 -4.72272 | CGACCCTGGTGTTTG GCGCA ACCT TGGGC TTTTTGCTGCAGGGG cydB-1 1788655 - 1789782 + | cytochrome D ubiquinol oxidase, subunit II AHA_1642 1789810 - 1789923 + | cyd operon protein YbgT TERM 2059 1789959 - 1789940 - T 100 -13.6 -4.28548 | opp_overlap 1789940 ACGCAGCCATGAAAA GGCCGACA CAGG TGTCGGCC TTTTTGCATCCTGCT TERM 2060 1789940 - 1789959 + T 100 -13.6 -4.68994 | opp_overlap 1789940 ACGCAGCCATGAAAA GGCCGACA CAGG TGTCGGCC TTTTTGCATCCTGCT AHA_1643 1791158 - 1789986 - | major facilitator transporter TERM 2061 1790549 - 1790559 + g 72 -2.4 -4.72272 | opp_overlap 1790528 1790549 TCTTGGCGTAGACCA GCAG CAG CGGC TTTTTGGTGAGCACC TERM 2062 1791357 - 1791335 - R 100 -19.2 -5.81622 | ACAAAACCAAAAAAA GCGGGAGGCA CAG TGCCTCCCGC TAGGGGTTGGAGAAG dkgB 1792336 - 1791533 - | 2,5-diketo-D-gluconate reductase B AHA_1645 1792680 - 1792384 - | antibiotic biosynthesis monooxygenase family protein TERM 2063 1792445 - 1792429 - G 79 -13.7 -3.53012 | GGTGCTTCCGGCAAA CCAGGGC TCT GCCCTGG CGACAAATTCGGTAA TERM 2064 1792855 - 1792829 - R 91 -12.3 -4.22214 | gap 1, overlap 1792832 AGTGAGGTAAAAGAA GCA-GGGAGCGC CGGG GCGCCCCCTTGC CATCAGGCATTGGCC TERM 2065 1792851 - 1792832 - R 81 -12.8 -3.1165 | overlap 1792829 GAGGTAAAAGAAGCA GGGAGCGC CGGG GCGCCCCC TTGCCATCAGGCATT AHA_1646 1793220 - 1792858 - | glyoxalase/dioxygenase superfamily protein TERM 2066 1794365 - 1794377 + G 78 -3.3 -5.00616 | overlap 1794329 1794357 1794366 ATCTGTTGAGCGGGC ACGAG CTG CTCGG TTTTTTGCACCCCGA AHA_1647 1793800 - 1794702 + | putative HTH-type transcriptional regulator YafC TERM 2067 1794803 - 1794836 + T 91 -9.5 -4.62069 | opp_overlap 1794806, overlap 1794804 1794805 CGGGGCGGCGCTAAA AAAGAGAGGCCGACA TTGC TGTCGGCCTCTCACG TTTTTCAGCTCAAGG TERM 2068 1794804 - 1794835 + T 84 -13 -3.3692 | opp_overlap 1794806, overlap 1794803 1794805 GGGGCGGCGCTAAAA AAGAGAGGCCGACA TTGC TGTCGGCCTCTCAC GTTTTTCAGCTCAAG TERM 2069 1794805 - 1794834 + T 89 -16.5 -2.61831 | opp_overlap 1794806, overlap 1794804 1794803 GGGCGGCGCTAAAAA AGAGAGGCCGACA TTGC TGTCGGCCTCTCA CGTTTTTCAGCTCAA TERM 2070 1794833 - 1794806 - T 100 -20 -5.00616 | opp_overlap 1794805 1794804 1794803 GGCGGCGCTAAAAAA GAGAGGCCGACA TTGC TGTCGGCCTCTC ACGTTTTTCAGCTCA glpK 1796371 - 1794869 - | glycerol kinase glpF 1797274 - 1796426 - | glycerol uptake facilitator protein glpT 1797762 - 1799117 + | sn-glycerol-3-phosphate transporter TERM 2071 1799169 - 1799189 + F 100 -11.1 -5.23316 | AGGTAAACTCCCCAA GGCCCCG CATCTGC CGGGGCC TTTTTTCGTCTCATC glpR 1799219 - 1799977 + | glycerol-3-phosphate regulon repressor TERM 2072 1801480 - 1801501 + G 73 -10.8 -3.61371 | CGAGTTCGACTGCTC GGTGCGCG AGCTGG CGCGCGCC TTTGCGCTGGAATTT glpD 1800299 - 1801786 + | glycerol-3-phosphate dehydrogenase glpQ 1801889 - 1802968 + | glycerophosphodiester phosphodiesterase TERM 2073 1803014 - 1802996 - f 83 -13.1 -3.19018 | opp_overlap 1802996 AACACGGGAATGCAA GCGGGGC CAGGT GCCCCGC TTTTTTATGCCTGTT TERM 2074 1802996 - 1803014 + F 100 -13.1 -5.30686 | opp_overlap 1802996 AACACGGGAATGCAA GCGGGGC CAGGT GCCCCGC TTTTTTATGCCTGTT TERM 2075 1803050 - 1803067 + F 72 -4.1 -4.8048 | opp_overlap 1803050 GAGAAAACAGAAGAG CGTAATC ATAT GTTTACG TTTTTGGTGTGCGGA AHA_1654 1803287 - 1804360 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2076 1804426 - 1804394 - f 72 -11.9 -2.8082 | opp_overlap 1804394, overlap 1804393 1804390 CACTGATTGAACAAG CGAGGTGTCATCGGC CGA GGCGGTGGCACCTCG TTGCCTCTTGAATCA TERM 2077 1804394 - 1804426 + F 100 -16.3 -3.19522 | opp_overlap 1804393 1804390 1804394 CACTGATTGAACAAG CGAGGTGTCATCGGC CGA GGCGGTGGCACCTCG TTGCCTCTTGAATCA tyrA 1804479 - 1805618 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 2078 1805664 - 1805625 - T 100 -22.4 -3.7941 | opp_overlap 1805631 1805637, overlap 1805626 1805631 1805637 CACGGCTGAGAATAA CCAAAAGCAAAAGGGGCC TGTC GGCCCCTTTTGCTTTTGT ACTCCCGCTTGTGCG TERM 2079 1805663 - 1805626 - T 100 -25.9 -2.87325 | opp_overlap 1805631 1805637, overlap 1805625 1805631 1805637 ACGGCTGAGAATAAC CAAAAGCAAAAGGGGCC TGTC GGCCCCTTTTGCTTTTG TACTCCCGCTTGTGC TERM 2080 1805631 - 1805658 + T 100 -20 -4.4648 | opp_overlap 1805631 1805626 1805625 1805637, overlap 1805637 TGAGAATAACCAAAA GCAAAAGGGGCC TGTC GGCCCCTTTTGC TTTTGTACTCCCGCT TERM 2081 1805658 - 1805631 - T 100 -20 -4.59414 | opp_overlap 1805631 1805637, overlap 1805626 1805625 1805637 TGAGAATAACCAAAA GCAAAAGGGGCC TGTC GGCCCCTTTTGC TTTTGTACTCCCGCT TERM 2082 1805637 - 1805652 + T 100 -11.8 -4.74012 | opp_overlap 1805637 1805631 1805626 1805625, overlap 1805631 TAACCAAAAGCAAAA GGGGCC TGTC GGCCCC TTTTGCTTTTGTACT TERM 2083 1805652 - 1805637 - T 100 -11.8 -4.72729 | opp_overlap 1805631 1805637, overlap 1805631 1805626 1805625 TAACCAAAAGCAAAA GGGGCC TGTC GGCCCC TTTTGCTTTTGTACT AHA_1656 1806566 - 1805691 - | LysR family transcriptional regulator AHA_1657 1807081 - 1806566 - | hypothetical protein TERM 2084 1807155 - 1807186 + r 70 -8.8 -3.71284 | opp_overlap 1807160 1807164, overlap 1807160 1807164 AGACGACATTTGGCT AAAAATAAAGCGCC ATTC GGCGCTCTATTTTG TTGTGTTCATGAACC TERM 2085 1807181 - 1807160 - R 95 -10.9 -4.57837 | opp_overlap 1807155 1807160 1807164, overlap 1807164 ACATTTGGCTAAAAA TAAAGCGCC ATTC GGCGCTCTA TTTTGTTGTGTTCAT TERM 2086 1807160 - 1807181 + r 100 -8.7 -4.91285 | opp_overlap 1807160 1807164, overlap 1807155 1807164 ACATTTGGCTAAAAA TAAAGCGCC ATTC GGCGCTCTA TTTTGTTGTGTTCAT TERM 2087 1807164 - 1807177 + r 71 -9.5 -3.59445 | opp_overlap 1807164 1807160, overlap 1807160 1807155 TTGGCTAAAAATAAA GCGCC ATTC GGCGC TCTATTTTGTTGTGT TERM 2088 1807177 - 1807164 - R 100 -9.5 -4.85782 | opp_overlap 1807160 1807155 1807164, overlap 1807160 TTGGCTAAAAATAAA GCGCC ATTC GGCGC TCTATTTTGTTGTGT AHA_1658 1807821 - 1807231 - | ecotin TERM 2089 1807810 - 1807793 - G 78 -7 -4.65895 | TCTGCTACGTAAAAA CTGCGT AAAATG ACGCAG ATCCGGCACACAATG TERM 2090 1807940 - 1807888 - R 74 -10.6 -3.53091 | gap 2, opp_overlap 1807889, overlap 1807889 AGTCCGGGTGCCAAA TGCGGGTGGCCAGTCGGGATCCTG TGCTCAT CGGGATCCC--CTGGCCACCCGGC TTCATCAGCGCACCA TERM 2091 1807939 - 1807889 - R 83 -14.1 -2.71712 | gap 2, opp_overlap 1807889, overlap 1807888 GTCCGGGTGCCAAAT GCGGGTGGCCAGTCGGGATCCTG TGCTCAT CGGGATCCC--CTGGCCACCCGG CTTCATCAGCGCACC TERM 2092 1807889 - 1807940 + r 93 -16.1 -3.14132 | gap 3, opp_overlap 1807889 1807888 GTCCGGGTGCCAAAT GC-GGGTGGCCAGTCGGGATCCTG TGCTCAT CGGGATCCC--CTGGCCACCCGGC TTCATCAGCGCACCA AHA_1659 1808502 - 1807945 - | hypothetical protein AHA_1660 1809872 - 1808499 - | hypothetical protein TERM 2093 1809888 - 1809907 + r 76 -9.2 -3.93398 | overlap 1809890 CTCTTGTCCTTGGGC AAGGGGGC CTTG GCCCCCTC TTCTTATATATGGAT TERM 2094 1809890 - 1809905 + r 81 -11.8 -3.55061 | overlap 1809888 CTTGTCCTTGGGCAA GGGGGC CTTG GCCCCC TCTTCTTATATATGG AHA_1661 1812346 - 1809932 - | proprotein convertase P-domain-containing protein TERM 2095 1812033 - 1812065 + g 76 -12.8 -3.4252 | gap 2, overlap 1812020 GTGCCAGCGGCGTCG CAGCCGGGTTCGCTGC TCT GCAGCGG-CC-GGCTG TTGTGATAGATGCGC AHA_1662 1814457 - 1812379 - | protease II AHA_1663 1816619 - 1814457 - | hemin receptor TERM 2096 1816690 - 1816704 + r 95 -5.8 -5.3658 | opp_overlap 1816687 1816686 1816689, overlap 1816687 AGTCAGATCAACGAT TGATAA TCA TTATCA TTTTGTTTTTATGAT TERM 2097 1816901 - 1816885 - R 100 -9.4 -5.4505 | opp_overlap 1816885 GGCTGCAATAAAAAA CCCGCT GCAGG AGCGGG TTTTCAAGGGGCATG TERM 2098 1816885 - 1816901 + r 80 -9.4 -4.07885 | opp_overlap 1816885 GGCTGCAATAAAAAA CCCGCT GCAGG AGCGGG TTTTCAAGGGGCATG AHA_1664 1818776 - 1816926 - | putative sulfatase TERM 2099 1818842 - 1818870 + rH 70 -3 -4.68593 | opp_overlap 1818819 1818817, overlap 1818844 1818847 GCATCGTGGCGATGA TCCACCGAGGCG GTGAG CGCCTGGATGTA TTTTTCGGTGATCGC AHA_1665 1819047 - 1818820 - | hypothetical protein AHA_1666 1819040 - 1820170 + | nucleoid-associated protein NdpA TERM 2100 1820200 - 1820223 + FH 100 -12.5 -5.27335 | opp_overlap 1820200 CAGTTTTGGCAAAAA GACACCGCA CTTCGC TGCGGTGTC TTTTTATTTAACGGG TERM 2101 1820223 - 1820200 - fH 100 -12.5 -4.57073 | opp_overlap 1820200 CAGTTTTGGCAAAAA GACACCGCA CTTCGC TGCGGTGTC TTTTTATTTAACGGG TERM 2102 1820298 - 1820331 + FH 100 -15.6 -3.73271 | opp_overlap 1820293 1820303, overlap 1820294 1820303 ACAGAATAATCCCCG TGAAAGGGTTTTCA GTGAGG TGAAAACCCTTTCA TTCATGTTTTTTTAT TERM 2103 1820303 - 1820326 + FH 80 -9.7 -4.02979 | opp_overlap 1820293 1820303, overlap 1820298 1820294 ATAATCCCCGTGAAA GGGTTTTCA GTGAGG TGAAAACCC TTTCATTCATGTTTT TERM 2104 1820326 - 1820303 - fH 71 -9.7 -3.54638 | opp_overlap 1820303 1820298 1820294, overlap 1820293 ATAATCCCCGTGAAA GGGTTTTCA GTGAGG TGAAAACCC TTTCATTCATGTTTT malE 1820566 - 1821747 + | maltose ABC transporter periplasmic protein TERM 2105 1821759 - 1821783 + F 71 -11.3 -2.91239 | GTAAGCACGCACTAC CCGGGAGGCCG CAA CGGCCTCCCAC TCTCTCAAATCTCTC malF 1821823 - 1823475 + | maltose transporter membrane protein malG 1823488 - 1824378 + | maltose transporter permease AHA_1670 1824448 - 1825584 + | maltose/maltodextrin import ATP-binding protein MalK TERM 2106 1825634 - 1825651 + T 100 -12.7 -5.10461 | ATTCAATGCCTTTTT GCCGGTC GCAA GACCGGC TTTTTATTGCCTGCC AHA_1671 1826515 - 1825700 - | polyphosphate kinase 2 AHA_1672 1826628 - 1827428 + | alpha/beta fold family hydrolase TERM 2107 1827459 - 1827485 + T 100 -13.8 -4.31293 | opp_overlap 1827464, overlap 1827464 CTGACGATGATCGTG AAAAAGGGAGCC GAG GGCTCCCTTTTG TTTGTTCGTATCTCA TERM 2108 1827464 - 1827480 + T 100 -13.7 -5.12172 | opp_overlap 1827464, overlap 1827459 GATGATCGTGAAAAA GGGAGCC GAG GGCTCCC TTTTGTTTGTTCGTA TERM 2109 1827480 - 1827464 - T 100 -13.7 -4.60487 | opp_overlap 1827464 1827459 GATGATCGTGAAAAA GGGAGCC GAG GGCTCCC TTTTGTTTGTTCGTA mipA 1828320 - 1827514 - | MltA-interacting protein MipA TERM 2110 1828270 - 1828298 + g 77 -14.6 -2.90496 | overlap 1828268 1828272 GGGCATGGCGGCAGC GAGGAGCAGGGC CGTCA GCCCTGCTGCTC TGATTTGACGCAAAA AHA_1674 1829426 - 1828356 - | PerM family permease AHA_1675 1829684 - 1829442 - | hypothetical protein AHA_1676 1829864 - 1831267 + | zinc metalloprotease TERM 2111 1831289 - 1831320 + T 100 -24.6 -4.46212 | opp_overlap 1831295 AGCGGCTCTCATTCA CGACAAGGGCGCAC CTCG GTGCGCCCTTGTCG TTTTATGATGACGAA TERM 2112 1831314 - 1831295 - T 95 -15 -3.4252 | opp_overlap 1831289 TCTCATTCACGACAA GGGCGCAC CTCG GTGCGCCC TTGTCGTTTTATGAT TERM 2113 1831351 - 1831364 + T 87 -8.1 -4.57341 | opp_overlap 1831341 GTGAATGGCGGGAAC GCCAG CCGG CTGGC TTTTTCGCAAGGGTT AHA_1677 1831869 - 1831387 - | thioredoxin arsC-1 1831930 - 1832280 + | arsenate reductase AHA_1679 1832277 - 1832672 + | hypothetical protein TERM 2114 1832704 - 1832720 + F 100 -9.4 -5.65177 | opp_overlap 1832704 CCTGCTCTGTGCAAA CCGGAC CTTGA GTCCGG TTTTTTTATGGATGT TERM 2115 1832720 - 1832704 - f 71 -10.1 -3.53012 | opp_overlap 1832704 CCTGCTCTGTGCAAA CCGGACC TTG AGTCCGG TTTTTTTATGGATGT TERM 2116 1833395 - 1833405 + G 71 -8.2 -3.85698 | GCCACCGTCAGCGAG GCGG CCG CCGC TTTGTCGAAGGACGA AHA_1680 1832963 - 1834033 + | penicillin acylase TERM 2117 1834065 - 1834050 - T 78 -11.8 -3.29461 | opp_overlap 1834050 GAAGCGTTGGTAGAA GGCCCC TCGC GGGGCC TTTTTTATGGCCGCA TERM 2118 1834050 - 1834065 + T 100 -11.8 -5.24129 | opp_overlap 1834050 GAAGCGTTGGTAGAA GGCCCC TCGC GGGGCC TTTTTTATGGCCGCA AHA_1681 1834690 - 1834070 - | hypothetical protein TERM 2119 1834256 - 1834276 + g 82 -11.1 -3.99324 | GCGGCCGATGCCGTT GAGGGCCTG CGC CAGCCCCTC TTTGTGCTGATAGGA iadA 1834867 - 1835997 + | isoaspartyl dipeptidase TERM 2120 1836048 - 1836079 + T 100 -24.6 -3.63694 | opp_overlap 1836048 1836054 TTCCCCTCTTTTAAA CGACAAGCCCGGCA GCAG TGCCGGGCTTGTCG TTGTTGGCGATGGGT TERM 2121 1836079 - 1836048 - T 100 -24.6 -3.53012 | opp_overlap 1836048, overlap 1836054 TTCCCCTCTTTTAAA CGACAAGCCCGGCA GCAG TGCCGGGCTTGTCG TTGTTGGCGATGGGT TERM 2122 1836073 - 1836054 - T 95 -15 -3.60151 | opp_overlap 1836048, overlap 1836048 TCTTTTAAACGACAA GCCCGGCA GCAG TGCCGGGC TTGTCGTTGTTGGCG AHA_1683 1837010 - 1836108 - | hypothetical protein TERM 2123 1837053 - 1837041 - H 76 -2.7 -4.98758 | AAAAACTGACAAAAA TGACA CCT TATCA TCACTTATTGGGCCT TERM 2124 1837094 - 1837107 + H 100 -8.1 -5.29782 | TTTGTGTGTTTGCCT GCTCC ATCC GGAGC TTTTTTATCAATATG TERM 2125 1837188 - 1837204 + H 71 -4.3 -4.57073 | opp_overlap 1837188, overlap 1837189 TGGTGCAGCCAGAAC GGGGTCT GAC AGGCCCA TTTTTCAACAGGATG AHA_1684 1837544 - 1838314 + | histidine ABC transporter, ATP-binding protein AHA_1685 1838380 - 1839153 + | arginine and ornithine binding protein TERM 2126 1839234 - 1839272 + F 80 -11.7 -3.35813 | gap 1, opp_overlap 1839260, overlap 1839232 1839235 CCTAGTCTGTAGTCA TCGGGCCCGTTGTCTCTC GCAA GGGAG-CGATGGGCCCGC TTAGTTGCAATGGAG TERM 2127 1839235 - 1839271 + F 83 -15.2 -2.61274 | gap 1, opp_overlap 1839260, overlap 1839232 1839234 CTAGTCTGTAGTCAT CGGGCCCGTTGTCTCTC GCAA GGGAG-CGATGGGCCCG CTTAGTTGCAATGGA AHA_1686 1839358 - 1840098 + | histidine ABC transporter, permease protein HisQ AHA_1687 1840102 - 1840794 + | histidine ABC transporter, permease protein HisM TERM 2128 1840824 - 1840809 - T 100 -11.8 -5.63504 | opp_overlap 1840809 AACGCCATAAAAAAA GCCCGC AATT GCGGGC TTTTTTGTCGCTGCG TERM 2129 1840809 - 1840824 + T 100 -11.8 -5.28176 | opp_overlap 1840809 AACGCCATAAAAAAA GCCCGC AATT GCGGGC TTTTTTGTCGCTGCG AHA_1688 1841487 - 1840846 - | hypothetical protein TERM 2130 1841566 - 1841540 - R 71 -10.1 -3.60475 | AAGCCCGATGTGAAA GGGGCCGGC GTTTTCCCG GCCAGCCCC TGAGCTATCAGTATT pflA 1842392 - 1841574 - | pyruvate formate lyase-activating enzyme 1 AHA_1690 1845436 - 1842458 - | PAS/GGDEF domain-containing protein TERM 2131 1844715 - 1844731 + g 72 -2.2 -4.77036 | TTGAGGTATTCGAGG CTCAGC ACGCC GATGAG TTTTTCCTGCTCCAG AHA_1691 1845532 - 1847220 + | NADH dehydrogenase TERM 2132 1850222 - 1850212 - g 77 -2.4 -5.00616 | overlap 1850213 GCGCCGCTGAAAAAA GGCG GCG CGCT GGAGAGTCGGGTCGA TERM 2133 1850605 - 1850571 - g 74 -4.9 -4.56597 | gap 1, overlap 1850572 CCTTTCTCTTAAAAA TGGCGAGGAGCAGTGG CTGA CC-CTGCCGCTCACCG TGACCGGGGCGAGCG AHA_1692 1847308 - 1852275 + | alpha-2-macroglobulin, N-terminal:Alpha-2-macroglobulin, N-terminal TERM 2134 1852323 - 1852344 + G 91 -15.9 -3.86346 | opp_overlap 1852312 GCAACGTTCCTTCCA GTGAGCGGG TTCG CCCGCTCAC TTTCTGGCAGCGTGG pbpC 1852286 - 1854685 + | penicillin-binding protein 1C AHA_1694 1855590 - 1854787 - | hypothetical protein TERM 2135 1855450 - 1855393 - G 76 -6.7 -4.52857 | gap 1, opp_overlap 1855399 ATGCGCCAGACAAAA GCCGTGCAACCGCTCCAGCC-CTGCCTG GGC CGGGCAGAAGCAGTCGTGGTTGGCCGGC GTGCGCCAGCGACCG thiI 1855925 - 1857373 + | thiamine biosynthesis protein ThiI TERM 2136 1857401 - 1857418 + T 100 -8.4 -5.96894 | opp_overlap 1857389 1857401 GCATGCATAAAAAAA TCCGGC CAATGA GCCGGA TTTTTTTATTTCACT TERM 2137 1857418 - 1857401 - T 100 -9.1 -5.64274 | opp_overlap 1857401, overlap 1857389 GCATGCATAAAAAAA TCCGGCC AATG AGCCGGA TTTTTTTATTTCACT AHA_1696 1857988 - 1857452 - | hypothetical protein TERM 2138 1857914 - 1857889 - GT 72 -2.5 -4.75289 | gap 1, overlap 1857882 1857909 TATGACAACAGAAAA GCCTGCTTG-GT TCA ACGCAACCTGGC CAGGAGTGCGACTCT AHA_1697 1858578 - 1857946 - | hypothetical protein AHA_1698 1858995 - 1859903 + | flagellin TERM 2139 1859938 - 1859914 - f 100 -10 -5.18371 | GCTGATAAAAGAAAA CAGGGCGG TTGTTCAGG CCGCCCTG GTCAAGAGATGGAAC TERM 2140 1860081 - 1860101 + F 100 -11.1 -5.19328 | overlap 1860083 AGCGTATGCTCGTTT TAGGCCGGA TTT TCCGGCCTC TTTTTATTGTGCCGT TERM 2141 1860083 - 1860099 + F 100 -13.7 -4.22377 | overlap 1860081 CGTATGCTCGTTTTA GGCCGGA TTT TCCGGCC TCTTTTTATTGTGCC AHA_1699 1860482 - 1861387 + | flagellin TERM 2142 1861507 - 1861488 - g 82 -15 -3.2827 | opp_overlap 1861485 1861481 TCAGTCAAGTAGCAA GAGCGGCC AATC GGCCGCTC AAGTGCTATCTGGCA AHA_1700 1861426 - 1861866 + | flagellin protein TERM 2143 1862840 - 1862827 - g 72 -3.8 -4.56597 | overlap 1862837 TCGTGGCCGGAAAAA GCCA GAATGA TGGC GGAGCCTTGGCTGGT fliD 1861893 - 1863302 + | flagellar hook-associated protein 2 fliS 1863328 - 1863750 + | flagellar protein FliS TERM 2144 1864153 - 1864117 - f 73 -5.2 -4.62069 | gap 2, opp_overlap 1864125 1864127 1864137 CTTGCAGTTCAAAAA GAACAGG--AGGCCGCCA TGC TGGCGGTGTTGCCTGTTC GCCATCAGCTTAATA TERM 2145 1864127 - 1864141 + F 72 -11.4 -3.15503 | opp_overlap 1864117, overlap 1864125 1864137 AAAAAGAACAGGAGG CCGCCA TGC TGGCGG TGTTGCCTGTTCGCC AHA_1703 1864132 - 1866141 + | hypothetical protein TERM 2146 1866178 - 1866195 + T 100 -12.7 -5.88565 | opp_overlap 1866178 CTGCTGAATAAAAAA CACCGGC GCTT GCCGGTG TTTTTTTATTGTGAA TERM 2147 1866195 - 1866178 - T 100 -12.7 -5.4505 | opp_overlap 1866178 CTGCTGAATAAAAAA CACCGGC GCTT GCCGGTG TTTTTTTATTGTGAA TERM 2148 1866228 - 1866216 - T 80 -9.1 -4.18506 | TTATTGTGAAAATAA CCACG CAA CGTGG CCTACTGGTTCGGCT AHA_1704 1867051 - 1866230 - | periplasmic binding protein TERM 2149 1866652 - 1866678 + g 78 -6.6 -4.56597 | overlap 1866649 AGGCATCGGCCTCGG CATTGGCGGT TTGTCCC ACCCCCAATG TTTTTCCCAGCACCC AHA_1705 1867913 - 1867044 - | cobalamin biosynthesis protein CobD TERM 2150 1867944 - 1867968 + r 100 -17.9 -3.03441 | opp_overlap 1867944, overlap 1867946 GGCGGCCCCGAGCAA GATGGCCGCCG GAG TGGCGGCCATC TGTTCCAGCGTGGTG TERM 2151 1867968 - 1867944 - R 100 -17.2 -3.14132 | opp_overlap 1867944 1867946 GGCGGCCCCGAGCAA GATGGCCGCC GGAGT GGCGGCCATC TGTTCCAGCGTGGTG TERM 2152 1867946 - 1867966 + r 91 -14.7 -3.07344 | opp_overlap 1867944, overlap 1867944 CGGCCCCGAGCAAGA TGGCCGCCG GAG TGGCGGCCA TCTGTTCCAGCGTGG mtnN-2 1868683 - 1867991 - | MTA/SAH nucleosidase AHA_1707 1869549 - 1868791 - | hypothetical protein AHA_1708 1870571 - 1869639 - | GufA protein TERM 2153 1869932 - 1869901 - G 70 -7.2 -4.07568 | gap 1, overlap 1869902 TTGCCGGGCCGAAAA CCGGCGGCG-CACAT GGC AAGCGCCACCGCCAG CCCTTCCGGTATGTC TERM 2154 1870292 - 1870257 - G 77 -14 -3.38272 | gap 1, overlap 1870258 1870291 CAGCAGCAGGGAGAA GGCGCTGGCCGCCAGCA TCA TGCCGGCGG-CAAAGCC CAGCATGCTATCCTC AHA_1709 1870808 - 1872580 + | methyl-accepting chemotaxis protein TERM 2155 1872635 - 1872664 + T 100 -20.9 -3.62597 | opp_overlap 1872639 1872642, overlap 1872639 GTATTGGCAGGCACC CAAACAACCCGGC TCTG GCCGGGTTGTTTG TTATTGGCCAGTGGC TERM 2156 1872639 - 1872660 + T 100 -15.9 -4.44667 | opp_overlap 1872639 1872642, overlap 1872635 TGGCAGGCACCCAAA CAACCCGGC TCTG GCCGGGTTG TTTGTTATTGGCCAG TERM 2157 1872660 - 1872639 - T 100 -15.9 -3.6682 | opp_overlap 1872639 1872635, overlap 1872642 TGGCAGGCACCCAAA CAACCCGGC TCTG GCCGGGTTG TTTGTTATTGGCCAG TERM 2158 1872657 - 1872642 - T 90 -11.8 -3.9693 | opp_overlap 1872639 1872635, overlap 1872639 CAGGCACCCAAACAA CCCGGC TCTG GCCGGG TTGTTTGTTATTGGC TERM 2159 1872994 - 1873009 + T 90 -11.8 -3.98661 | opp_overlap 1872994 ACGGCCATAAAAAAA CCCGGC CTGG GCCGGG TTTGTGGTACGTGTG TERM 2160 1873009 - 1872994 - T 100 -11.8 -5.61596 | opp_overlap 1872994 ACGGCCATAAAAAAA CCCGGC CTGG GCCGGG TTTGTGGTACGTGTG AHA_1710 1873894 - 1873040 - | inositol-1-monophosphatase AHA_1711 1874045 - 1874500 + | hypothetical protein TERM 2161 1874532 - 1874571 + F 100 -18.8 -3.62096 | GTCCGGGCTGTTCAA GCGGCACAATATTTGTCA TAAC TGACCAGTATTGTGCCGC TTTGCCATGCTGGCG AHA_1712 1874693 - 1875355 + | glutathione S-transferase emrD 1875606 - 1876805 + | multidrug resistance protein D TERM 2162 1876843 - 1876822 - T 79 -7.2 -4.38712 | opp_overlap 1876824, overlap 1876824 CCGAGCGCTAGAAAA GACCCGCC CAAGCC GGCGGGTT TTTTATGGGCCGCTT TERM 2163 1876841 - 1876824 - T 76 -9.8 -3.80133 | opp_overlap 1876824, overlap 1876822 GAGCGCTAGAAAAGA CCCGCC CAAGCC GGCGGG TTTTTTATGGGCCGC TERM 2164 1876824 - 1876841 + T 100 -9.8 -5.24129 | opp_overlap 1876824 1876822 GAGCGCTAGAAAAGA CCCGCC CAAGCC GGCGGG TTTTTTATGGGCCGC TERM 2165 1876960 - 1876939 - T 100 -15.9 -5.42975 | opp_overlap 1876939 GGAGATAAAGAAAAA GCCCGTCAC GTTG GTGACGGGC TTTTTGCTGTTGGTA TERM 2166 1876939 - 1876960 + T 100 -15.9 -4.89233 | opp_overlap 1876939 GGAGATAAAGAAAAA GCCCGTCAC GTTG GTGACGGGC TTTTTGCTGTTGGTA AHA_1714 1877544 - 1877170 - | hypothetical protein TERM 2167 1877517 - 1877535 + g 71 -8.1 -3.87815 | opp_overlap 1877516, overlap 1877516 TGCCTTCCTCAATAC GGCGGAG CTGAT TTCCGCC TTTATCCACGTGGAC AHA_1715 1877676 - 1878245 + | YecA family protein TERM 2168 1878282 - 1878265 - f 100 -12.7 -4.66833 | opp_overlap 1878265 GTCGAACCCTAAAAA GAGCGCC TGGT GGCGCTC TTTTTACATCGGGAT TERM 2169 1878265 - 1878282 + F 100 -12.7 -4.66163 | opp_overlap 1878265 GTCGAACCCTAAAAA GAGCGCC TGGT GGCGCTC TTTTTACATCGGGAT ubiH 1878429 - 1879646 + | 2-polyprenyl-6-methoxyphenol 4-hydroxylase AHA_1717 1879742 - 1880971 + | 2-octaprenyl-6-methoxyphenol hydroxylase TERM 2170 1881081 - 1881108 + F 90 -12.8 -3.83205 | gap 1 AAACTAATGTGATGA GGCTGATGACCCG GTT TGGG-CATCAGCC TTTAATCTGGGCGCT TERM 2171 1882371 - 1882399 + G 74 -9.6 -3.85817 | gap 1, opp_overlap 1882371 ACCGCCGCTGGAGAA GAGCGGGAAGGTG TGAT CACCT-CCGGCTC TTTCTCGCCCACCCT gcvT 1881450 - 1882547 + | glycine cleavage system aminomethyltransferase T gcvH 1882653 - 1883042 + | glycine cleavage system H protein TERM 2172 1883048 - 1883075 + F 95 -14.1 -3.51924 | opp_overlap 1883043, overlap 1883049 CGAAGAGTAATGCCC CCGGGCCCTGC CAATGC GCAGGGCCCGC TTGTATAGGTGCCCG TERM 2173 1883049 - 1883074 + F 91 -17.6 -2.7094 | opp_overlap 1883043, overlap 1883048 GAAGAGTAATGCCCC CGGGCCCTGC CAATGC GCAGGGCCCG CTTGTATAGGTGCCC TERM 2174 1883250 - 1883235 - f 76 -11.8 -3.13432 | opp_overlap 1883227 1883226 CCGAACATGAGTGAA GCCGGC CGAG GCCGGC TGTCAGGCACTTAGT TERM 2175 1884084 - 1884104 + G 85 -14.7 -3.60296 | CTGGGTGCCGACGTG GTGCTGGGC TCA GCCCAGCGC TTTGGCGTGCCCATG TERM 2176 1885564 - 1885517 - g 71 -11.2 -3.42503 | gap 1, overlap 1885510 1885520 1885522 1885532 GGTCAAGACCGACAA GGAGAGCCGCAACAACGGCGCCG TGT CGGCGGCACCGTT-CGGCTCGGC CAGCATCCTGCCCAT TERM 2177 1885561 - 1885520 - g 79 -15.9 -2.86426 | gap 1, overlap 1885510 1885517 1885522 1885532 CAAGACCGACAAGGA GAGCCGCAACAACGGCGCCG TGT CGGCGGCACCGTT-CGGCTC GGCCAGCATCCTGCC TERM 2178 1885559 - 1885522 - g 71 -12.7 -2.97513 | gap 1, overlap 1885510 1885520 1885517 1885532 AGACCGACAAGGAGA GCCGCAACAACGGCGCCG TGT CGGCGGCACCGTT-CGGC TCGGCCAGCATCCTG TERM 2179 1885553 - 1885532 - g 73 -10.8 -3.64487 | overlap 1885510 1885522 1885520 1885517 GGAGAGCCGCAACAA CGGCGCCG TGTCGG CGGCACCG TTCGGCTCGGCCAGC gcvP 1883295 - 1886171 + | glycine dehydrogenase TERM 2180 1886213 - 1886232 + T 100 -13.6 -5.58522 | opp_overlap 1886213 GTTGGAAACCAACAA TGCCCTGC AATC GCAGGGCA TTTTTCTTTTGTGTC TERM 2181 1886232 - 1886213 - T 93 -13.6 -3.89354 | opp_overlap 1886213 GTTGGAAACCAACAA TGCCCTGC AATC GCAGGGCA TTTTTCTTTTGTGTC AHA_1721 1887359 - 1886286 - | hypothetical protein TERM 2182 1887328 - 1887318 - G 86 -5.4 -5.1356 | overlap 1887320 1887321 GGCCAGGAACAAAAA CATC TGA GATG CATCTCTCAGCATGG AHA_1722 1887466 - 1887762 + | ArsR family transcriptional regulator AHA_1723 1887834 - 1888217 + | arsenic operon regulator AHA_1724 1888221 - 1888649 + | arsenical resistance operon trans-acting repressor ArsD AHA_1725 1888718 - 1890517 + | arsenical pump-driving ATPase arsB 1890616 - 1891650 + | arsenical-resistance protein arsC-2 1891647 - 1892078 + | arsenate reductase AHA_1728 1892219 - 1892968 + | methyltransferase TERM 2183 1893034 - 1892999 - T 100 -16.8 -4.03413 | overlap 1893001 AGGGGCCCAGATAAA CAGCGGGCCCTTGCCA CCGG TGGCGAGGGCCCGCAA GGGCATGGCTGATCC TERM 2184 1893032 - 1893001 - T 100 -21.6 -3.61232 | overlap 1892999 GGGCCCAGATAAACA GCGGGCCCTTGCCA CCGG TGGCGAGGGCCCGC AAGGGCATGGCTGAT AHA_1729 1893387 - 1893079 - | hypothetical protein TERM 2185 1894493 - 1894521 + G 84 -8.7 -4.46212 | CTCGCCTACAGCCTG GGCGCCATGACCG GGC CGCTGCTGGCGCC TTTTGTCATGGCGCA AHA_1730 1893491 - 1894783 + | major facilitator family transporter TERM 2186 1894827 - 1894809 - T 100 -14.6 -5.5112 | opp_overlap 1894809 CGTACCAATAAAAAA GCCGACTC AGT GAGTCGGC TTTTTGTCCATCTGG TERM 2187 1894809 - 1894827 + T 100 -14.6 -4.89852 | opp_overlap 1894809 CGTACCAATAAAAAA GCCGACTC AGT GAGTCGGC TTTTTGTCCATCTGG AHA_1731 1896429 - 1894849 - | alkyl hydroperoxide reductase subunit F TERM 2188 1896509 - 1896480 - R 100 -15 -3.89346 | opp_overlap 1896485, overlap 1896483 TTGTCAGGCCAGAAA GCAGACCGGCCC TTGAAC GGGCCGGTCTTC AGAGCGGGGAGGCTT TERM 2189 1896506 - 1896483 - R 91 -15.3 -3.01918 | opp_overlap 1896485, overlap 1896480 TCAGGCCAGAAAGCA GACCGGCCC TTGAAC GGGCCGGTC TTCAGAGCGGGGAGG TERM 2190 1896485 - 1896504 + r 76 -12.1 -3.01712 | opp_overlap 1896483 1896480 AGGCCAGAAAGCAGA CCGGCCC TTGAAC GGGCCGG TCTTCAGAGCGGGGA AHA_1732 1897089 - 1896523 - | alkyl hydroperoxide reductase subunit C TERM 2191 1897475 - 1897445 - R 100 -8.9 -5.60993 | overlap 1897446 GCGCGGATAAAAAAA TCCCGGCGTCGTC GCAAG GACAAGGCCGGGT CATCAAACAAGGAAT TERM 2192 1897474 - 1897446 - R 90 -12.4 -3.95873 | overlap 1897445 CGCGGATAAAAAAAT CCCGGCGTCGTC GCAAG GACAAGGCCGGG TCATCAAACAAGGAA TERM 2193 1897705 - 1897717 + r 74 -3.3 -4.88258 | TATTGCCGATCAAGT GCGCT GAA AACGC TTTTATTGTAATTTT AHA_1733 1898196 - 1897750 - | CBS domain-containing protein queA 1898409 - 1899476 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 2194 1899463 - 1899485 + F 90 -12.7 -3.85817 | gap 1 TCGTCACCCGTCGCC GGGCGCAGGC ATAA GCC-GCGCCC TTTATACCGGGCCCT TERM 2195 1899590 - 1899566 - g 71 -5.7 -4.28432 | gap 1, opp_overlap 1899569 1899571, overlap 1899569 AATTTGAACTGAAAA CCACTGACGG CCGTGC CCGTC-GCGG CCAGCTGGTATTCGA tgt 1899547 - 1900683 + | queuine tRNA-ribosyltransferase yajC 1900734 - 1901069 + | preprotein translocase, YajC subunit TERM 2196 1901118 - 1901146 + G 95 -10.3 -4.60797 | opp_overlap 1901117 1901118 CCGCTGTGGAAATAC CTGATGGTGGTCG TGG TGATCGCCATCGG TTTTCTATATGCAGC secD-1 1901088 - 1902941 + | protein-export membrane protein SecD secF-1 1902951 - 1903898 + | protein-export membrane protein SecF TERM 2197 1903906 - 1903923 + F 100 -14.1 -4.27117 | opp_overlap 1903906 TGCCGTAAATGACAA GGGCGCC GCGA GGCGCCC TTTCTCTTATCGCCC TERM 2198 1903923 - 1903906 - f 95 -14.1 -3.60151 | opp_overlap 1903906 TGCCGTAAATGACAA GGGCGCC GCGA GGCGCCC TTTCTCTTATCGCCC AHA_1739 1903998 - 1904366 + | rhodanese domain-containing protein AHA_1740 1904511 - 1905404 + | lipoprotein NlpI TERM 2199 1905456 - 1905440 - T 88 -10.1 -4.44915 | opp_overlap 1905440 GAATGATGTAGAAAA GGCCTCA TTG CGAGGCC TTTTTGCTGTCCGGG TERM 2200 1905440 - 1905456 + T 93 -9.4 -4.8048 | opp_overlap 1905440 GAATGATGTAGAAAA GGCCTC ATTGC GAGGCC TTTTTGCTGTCCGGG AHA_1741 1906394 - 1905522 - | collagenase TERM 2201 1905585 - 1905608 + g 72 -12.4 -3.37612 | GTCGCGCTCCTGCTG CAGGGGCAGG GGAG CCTGGCCCTG TTGGTTGGCCTTGAA AHA_1742 1907402 - 1906407 - | STM-proteaseA TERM 2202 1907713 - 1907745 + Gr 86 -12.1 -3.85698 | opp_overlap 1907719 1907721 1907722, overlap 1907719 CTGCTGGCCAGCGTG TTCAAAGAGGCCATC GCA GATGGCGACTTTGAA TTTCTGGCAGGCAAG TERM 2203 1908104 - 1908090 - gR 72 -11.4 -3.05844 | GGGCTCAGCGCAAGA GGCGCA CTC TGCGCC GGCGGGTGGGGTTGC AHA_1743 1908495 - 1908079 - | hypothetical protein AHA_1744 1907593 - 1908132 + | sterol binding protein AHA_1745 1908675 - 1909400 + | RNA methyltransferase iscR 1909494 - 1909997 + | iron-sulfur cluster assembly transcription factor IscR iscS 1910055 - 1911269 + | cysteine desulfurase IscS iscU 1911311 - 1911694 + | scaffold protein iscA 1911710 - 1912033 + | iron-sulfur cluster assembly protein IscA hscB 1912156 - 1912674 + | Fe-S protein assembly co-chaperone HscB TERM 2204 1913127 - 1913104 - g 75 -4.4 -4.77986 | gap 1, overlap 1913106 CGAAATACTCAAAAA GCTGGCCGAGC GGG GCGCTGCC-GC CCTCGGTGGCGATCT hscA 1912703 - 1914550 + | Fe-S protein assembly chaperone HscA fdx 1914552 - 1914890 + | ferredoxin, 2Fe-2S type, ISC system TERM 2205 1914959 - 1914983 + F 90 -5.6 -5.252 | gap 1 TAATGATATGGTGAA GGCCGTGACCC TTGA GGGA-GCGGCC TTTTTTGTGCCCGTG TERM 2206 1916122 - 1916073 - g 86 -11.9 -4.24002 | opp_overlap 1916069, overlap 1916074 CGCCAAAGCCGAAAA CGAGCAGGCCTGGGCGCTGCCGC TGGA GCCGTGGCACGCAGGCCAGCTCA CCTCTGCCTTTGCCG TERM 2207 1916121 - 1916074 - g 73 -13.2 -3.13919 | opp_overlap 1916069, overlap 1916073 GCCAAAGCCGAAAAC GAGCAGGCCTGGGCGCTGCCGC TGGA GCCGTGGCACGCAGGCCAGCTC ACCTCTGCCTTTGCC pepB 1915048 - 1916349 + | aminopeptidase B TERM 2208 1916551 - 1916589 + G 70 -13.1 -2.89564 | gap 1 GATCCATCTGGTGAC CGCC-AGCCCCTTGCTGG ATAT CCAGCAGGCGGCACGGCG TCTGTGCAGTCAGGG AHA_1754 1916453 - 1917736 + | aminopeptidase B TERM 2209 1917750 - 1917767 + F 85 -12.7 -3.53012 | opp_overlap 1917750 GACCGGCAACGACAA GGGCACC TGCG GGTGCCC TTTCGACAGGGGGAG TERM 2210 1917767 - 1917750 - f 85 -12.7 -3.51329 | opp_overlap 1917750 GACCGGCAACGACAA GGGCACC TGCG GGTGCCC TTTCGACAGGGGGAG AHA_1755 1918006 - 1918434 + | nucleoside diphosphate kinase TERM 2211 1918456 - 1918471 + F 100 -10.4 -5.45813 | opp_overlap 1918450 1918451 TCGAAAGAACCCCAA GGGAGC CTCG GCTCCC TTTTGTTTTTTGGTC TERM 2212 1918630 - 1918619 - g 84 -2.2 -5.30616 | overlap 1918613 TGAGCGAAACAAAAA CCAA CCTG CTGG ATCTTGATCGGGATG AHA_1756 1918603 - 1919706 + | hypothetical protein TERM 2213 1920204 - 1920186 - g 100 -13.8 -4.29738 | CGATACCTATGAAAA CGCGGCAC TTT GCGCCGCG CAAAATCGCAGAAAT pilF 1919719 - 1920510 + | type IV pilus biogenesis/stability protein PilW AHA_1758 1920500 - 1921438 + | hypothetical protein TERM 2214 1921539 - 1921512 - g 71 -13.4 -2.52543 | gap 1, overlap 1921498 ATGGTCGGTAATGTA CCG-GTTGGGGGC GAT GCCCCCATCACGG TGCAGACCATGACCA ispG 1921449 - 1922564 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 2215 1922571 - 1922593 + F 71 -9.8 -3.47526 | opp_overlap 1922573, overlap 1922570 1922573 1922590 GAGGGTTGAGCAACC AAGGGCCACT CAG GGTGGCCCTG TCTTTAGGTTGCTGA TERM 2216 1922573 - 1922591 + F 78 -12.4 -3.30507 | opp_overlap 1922573, overlap 1922571 1922570 1922590 GGGTTGAGCAACCAA GGGCCACT CAG GGTGGCCC TGTCTTTAGGTTGCT TERM 2217 1922591 - 1922573 - f 80 -11.7 -3.39895 | opp_overlap 1922573 1922571 1922570 1922590 GGGTTGAGCAACCAA GGGCCAC TCAGG GTGGCCC TGTCTTTAGGTTGCT hisS 1922703 - 1923980 + | histidyl-tRNA synthetase AHA_1761 1923984 - 1924634 + | TPR repeat-containing protein AHA_1762 1924654 - 1925811 + | PQQ repeat-containing protein TERM 2218 1925834 - 1925859 + F 100 -14.7 -4.06384 | opp_overlap 1925831, overlap 1925832 TCAATCTGAATATCC GGCTCCTGGTC TTCG GACCCGGAGCC TTTGTCGTCTTGAGA TERM 2219 1927342 - 1927324 - g 72 -7.4 -4.16909 | overlap 1927325 AGGGCAAGAAAAATA CCCTGACT CTG AGCCAGGA GCGTCAACGCAAGCG engA 1925886 - 1927385 + | GTP-binding protein EngA TERM 2220 1927393 - 1927414 + F 100 -13 -5.24129 | AGAAATAAGGCCCAG CGGCTGCC CTCACC GGCAGCCG TTTTTTCTAGGGCCA TERM 2221 1927437 - 1927472 + F 100 -20.6 -3.53012 | TAGGGCCAAGGGGAG GGGAATGTGCAGTGGG CTGA CCCACTGCACATTCAC TTTGCAAGGAGCCAA AHA_1764 1927490 - 1927723 + | ubiquitin ligase sinat5 TERM 2222 1927751 - 1927736 - Tf 100 -11.8 -5.26316 | opp_overlap 1927736 TGAGGCGATAAAAAA CCCGGC GATT GCCGGG TTTATGCTGTGTGTT TERM 2223 1927736 - 1927751 + TF 90 -11.8 -4.05991 | opp_overlap 1927736 TGAGGCGATAAAAAA CCCGGC GATT GCCGGG TTTATGCTGTGTGTT TERM 2224 1927835 - 1927858 + TF 74 -6.6 -4.26881 | overlap 1927836 TCATTGAGCTTGAGT TTGCGTCTGG GGCT CCAGCCGCAC TTTGCTTTTCTGACC TERM 2225 1928078 - 1928067 - Tf 72 -2.2 -4.87389 | CACCCGAAAAACAAA CCTG TCAA CAAG GGATCAGCGCAGGGT AHA_1765 1929572 - 1928082 - | solute-binding family 3 protein TERM 2226 1928542 - 1928561 + gF 72 -11.4 -3.06302 | AGCCGGTTGTTGACC CCCATCGC CTTG GCGGTGGG TTCGGTCAGCATCAT TERM 2227 1929250 - 1929207 - Gf 71 -9.4 -3.75153 | gap 1, opp_overlap 1929243, overlap 1929209 GGGGCCGAAGCGAAA CAGCTGGCGCCG-CTCCGGGG TGA CCACGATGGCGGCGGCAGCCA GATCCAGCTTGCCCT TERM 2228 1929248 - 1929209 - Gf 80 -12 -3.46068 | gap 1, opp_overlap 1929243, overlap 1929207 GGCCGAAGCGAAACA GCTGGCGCCG-CTCCGGGG TGA CCACGATGGCGGCGGCAGC CAGATCCAGCTTGCC TERM 2229 1929793 - 1929773 - gR 72 -4 -4.56597 | gap 1 TTTCGTGTCCAAAAA CTGCTGCAA CGCT TCGC-GCAG ATGAAACAGGAGAGA TERM 2230 1930862 - 1930830 - gR 78 -13.3 -2.62184 | GCGCGTTTGACATCA TGCAGGAGGGGCCGC TCG GCGGCGCCGCCTTCA ACAACGAGTTCGGTC TERM 2231 1933354 - 1933401 + Gr 76 -10.4 -3.72576 | gap 1, overlap 1933355 AGTGGAGGTGCGCGA TGCCG-CTCACCTGGCCGCGCTG CAA CAGAGCGGGCTGGTGGGGCTGCG TTTCGTCGACAACCG TERM 2232 1933355 - 1933400 + Gr 72 -11.7 -2.83403 | gap 1, overlap 1933354 GTGGAGGTGCGCGAT GCCG-CTCACCTGGCCGCGCTG CAA CAGAGCGGGCTGGTGGGGCTGC GTTTCGTCGACAACC purL 1929554 - 1933627 + | phosphoribosylformylglycinamidine synthase TERM 2233 1933666 - 1933650 - TR 100 -10.8 -5.95539 | opp_overlap 1933650 TCGCAAACAAAAAAA CCGGCC CCTGT GGCCGG TTTTTTTATGGCGGC TERM 2234 1933650 - 1933666 + Tr 100 -10.8 -5.60993 | opp_overlap 1933650 TCGCAAACAAAAAAA CCGGCC CCTGT GGCCGG TTTTTTTATGGCGGC AHA_1767 1935215 - 1933689 - | sensory box protein AHA_1768 1936664 - 1935231 - | response regulator/sensory box/hdig domain-containing protein AHA_1769 1937791 - 1936661 - | hypothetical protein TERM 2235 1937945 - 1937961 + r 73 -10.8 -3.34517 | opp_overlap 1937945, overlap 1937943 GGGCAGATAAAAAAA CCGGCC ACTTG GGCCGG TCTTTGAGGGGGCGT TERM 2236 1937961 - 1937945 - R 100 -10.8 -5.71712 | opp_overlap 1937945 1937943 GGGCAGATAAAAAAA CCGGCC ACTTG GGCCGG TCTTTGAGGGGGCGT AHA_1770 1939444 - 1937981 - | NADH dehydrogenase subunit N AHA_1771 1941026 - 1939506 - | NADH dehydrogenase subunit M AHA_1772 1942952 - 1941105 - | NADH dehydrogenase subunit L AHA_1773 1943257 - 1942949 - | NADH-quinone oxidoreductase chain k AHA_1774 1943805 - 1943257 - | NADH dehydrogenase subunit J AHA_1775 1944358 - 1943816 - | NADH dehydrogenase subunit I AHA_1776 1945455 - 1944487 - | NADH dehydrogenase subunit H TERM 2237 1944893 - 1944881 - G 71 -9.1 -3.76759 | AGGAAGGTGATGAAA CCCAG GAT CTGGG GGATCACGTTCCACA AHA_1777 1948181 - 1945452 - | NADH dehydrogenase subunit G TERM 2238 1947109 - 1947127 + g 73 -13.2 -3.21772 | opp_overlap 1947106, overlap 1947108 GTGCGCACACCACCG TGCTGCAG GAT CTGCAGCA TCTTCTGCAGGCATT nuoF 1949628 - 1948261 - | NADH dehydrogenase I subunit F AHA_1779 1950167 - 1949625 - | NADH dehydrogenase subunit E AHA_1780 1952034 - 1950229 - | bifunctional NADH:ubiquinone oxidoreductase subunit C/D AHA_1781 1952711 - 1952037 - | NADH dehydrogenase subunit B AHA_1782 1953145 - 1952741 - | NADH dehydrogenase subunit A TERM 2239 1953413 - 1953361 - R 74 -3.4 -4.85782 | opp_overlap 1953365 1953380, overlap 1953373 1953374 1953378 CGTGTGAAAAATAAA CTAATCGTGAAATGAG-AGACCCCGC CAG GCGGGGTCTGCTCGA-TCAGGGTTTG AGGATGGGTAGCGCC TERM 2240 1953402 - 1953373 - R 86 -12.9 -3.6288 | gap 1, opp_overlap 1953365 1953380, overlap 1953361 1953374 1953378 AAACTAATCGTGAAA TGAG-AGACCCCGC CAG GCGGGGTCTGCTCG ATCAGGGTTTGAGGA TERM 2241 1953401 - 1953374 - R 90 -16.4 -2.77005 | gap 1, opp_overlap 1953365 1953380, overlap 1953373 1953361 1953378 AACTAATCGTGAAAT GAG-AGACCCCGC CAG GCGGGGTCTGCTC GATCAGGGTTTGAGG TERM 2242 1953396 - 1953378 - R 93 -16 -3.01269 | opp_overlap 1953365 1953380, overlap 1953374 1953373 1953361 AATCGTGAAATGAGA GACCCCGC CAG GCGGGGTC TGCTCGATCAGGGTT TERM 2243 1953380 - 1953394 + r 76 -12.8 -2.80816 | opp_overlap 1953378 1953374 1953373 1953361, overlap 1953365 TCGTGAAATGAGAGA CCCCGC CAG GCGGGG TCTGCTCGATCAGGG motB 1954279 - 1953404 - | flagellar motor protein MotB AHA_1784 1955015 - 1954257 - | chemotaxis MotA protein TERM 2244 1955275 - 1955260 - R 100 -8.2 -5.15969 | opp_overlap 1955260 1955255 TTGGAAGGCAAAAAA CCGGCC ATTG AGCCGG TTTTCTTAGATTGGA TERM 2245 1955260 - 1955275 + r 86 -7.5 -4.72029 | opp_overlap 1955260, overlap 1955255 TTGGAAGGCAAAAAA CCGGC CATTGA GCCGG TTTTCTTAGATTGGA TERM 2246 1955462 - 1955433 - R 78 -12.3 -3.16106 | opp_overlap 1955440, overlap 1955440 TGAAAACCTCAAAAG CAAAAAACCGACC ATCA GGTCGGTTCTTTA AAATTTGGCGGTGAG TERM 2247 1955455 - 1955440 - R 100 -10.4 -5.46698 | opp_overlap 1955440, overlap 1955433 CTCAAAAGCAAAAAA CCGACC ATCA GGTCGG TTCTTTAAAATTTGG TERM 2248 1955440 - 1955455 + r 83 -10.4 -3.98804 | opp_overlap 1955433 1955440 CTCAAAAGCAAAAAA CCGACC ATCA GGTCGG TTCTTTAAAATTTGG AHA_1786 1956318 - 1955701 - | hypothetical protein AHA_1787 1957067 - 1956339 - | hypothetical protein TERM 2249 1956485 - 1956438 - G 71 -12.6 -3.06183 | gap 1, opp_overlap 1956442, overlap 1956442 1956454 GCGACCGGCACCGAA GCCACCGGC-GAGGTAAGCGGCG CGG CGCCGGCCACCTCTGCCGCCGCC ACCACCACGCAGGTT AHA_1788 1957654 - 1957064 - | LemA protein mepA 1958494 - 1957712 - | penicillin-insensitive murein endopeptidase AHA_1790 1958652 - 1959194 + | hypothetical protein AHA_1791 1959405 - 1959692 + | RNA-binding protein TERM 2250 1959713 - 1959735 + T 100 -14.9 -5.38054 | opp_overlap 1959713 CTCGATAACGCAAAA CGGCATGGG TTCCC CCCATGCCG TTTTTGTTTCTGGCG TERM 2251 1959735 - 1959713 - T 100 -14.9 -4.3208 | opp_overlap 1959713 CTCGATAACGCAAAA CGGCATGGG TTCCC CCCATGCCG TTTTTGTTTCTGGCG AHA_1792 1960663 - 1959764 - | aldo/keto reductase family oxidoreductase TERM 2252 1960703 - 1960693 - H 90 -5.4 -5.1925 | opp_overlap 1960693 1960691 1960698 GGATAAGGGAAAAAA TGCT GCC AGCA TCTTGGTCTCTTCTG AHA_1793 1960779 - 1961186 + | bacteriophage CI repressor protein, putative TERM 2253 1961912 - 1961933 + G 71 -10.8 -3.43071 | opp_overlap 1961909 TCTCATCAACCAGTT GTCGCCGG CCCAGT CCGGCGGC TTCCTTGATCTGCAG AHA_1794 1961268 - 1961969 + | CsgA AHA_1795 1962060 - 1963079 + | L-allo-threonine aldolase TERM 2254 1963120 - 1963091 - T 100 -19.5 -3.06831 | opp_overlap 1963091 1963096, overlap 1963096 TTAAGGTTCACTCAA TAAAACAGGGCGC CAAG GCGCCCTGTTTTA TTGTTGAGAAGAAAG TERM 2255 1963091 - 1963120 + T 100 -19.5 -3.61398 | opp_overlap 1963091 1963096, overlap 1963096 TTAAGGTTCACTCAA TAAAACAGGGCGC CAAG GCGCCCTGTTTTA TTGTTGAGAAGAAAG TERM 2256 1963096 - 1963115 + T 100 -15 -4.89477 | opp_overlap 1963091 1963096, overlap 1963091 GTTCACTCAATAAAA CAGGGCGC CAAG GCGCCCTG TTTTATTGTTGAGAA TERM 2257 1963115 - 1963096 - T 100 -15 -4.67982 | opp_overlap 1963096 1963091, overlap 1963091 GTTCACTCAATAAAA CAGGGCGC CAAG GCGCCCTG TTTTATTGTTGAGAA AHA_1796 1963577 - 1963140 - | GGDEF domain-containing protein AHA_1797 1964614 - 1963580 - | response regulator TERM 2258 1963979 - 1963939 - G 78 -15.5 -2.73994 | overlap 1963936 AGTCGTGGAACAGGA TCAGCGCCTCACCGGCG ATACCGG CGCCGATGAAGCCCTGA CAGACGGCGGAGAGG TERM 2259 1964230 - 1964269 + g 74 -15 -2.60496 | gap 1, overlap 1964229 1964227 1964232 1964257 1964258 CGGCGGTCCGGATGT CATGTGCAGTGGCGGTGCC TTT GGC-CTGCCACAGCTCATG CTGTTTCAGCAGGGC AHA_1798 1965607 - 1964669 - | LysR family transcriptional regulator TERM 2260 1964819 - 1964829 + g 76 -8.2 -4.13767 | CAACATATAGAAGGG CCGG TTG CCGG TTTTCCAGTCGGGCA AHA_1799 1966382 - 1965681 - | hypothetical protein TERM 2261 1966318 - 1966298 - G 100 -9.9 -5.14894 | opp_overlap 1966303 AAAAAAGTATAAAAA TCATAGTAA TGG TTACTATGA TGCCCAACAATACCA TERM 2262 1966440 - 1966478 + H 83 -12.3 -3.727 | gap 1, overlap 1966441 TGGATCCGATTTTGT ACCAGCGCCGG-GTGCCC GGGA GGGCCCTCCGTCGCTGGG TTTCCCTGTGATCAC TERM 2263 1966441 - 1966477 + H 86 -15.8 -2.83299 | gap 1, overlap 1966440 GGATCCGATTTTGTA CCAGCGCCGG-GTGCCC GGGA GGGCCCTCCGTCGCTGG GTTTCCCTGTGATCA TERM 2264 1966801 - 1966788 - g 72 -4.5 -4.58283 | CAAGGGCGTGAAAAA GCAGA TCTA CCTGC GCCTCTCCGGCATCC AHA_1800 1966555 - 1968486 + | PAS/GGDEF domain-containing protein TERM 2265 1968510 - 1968536 + F 100 -13.6 -4.66609 | overlap 1968512 TCTGCGGCGCTGCTA ATGCGAGGGGCC TTG GGCCCCTCGCTG TTTTTGGGTAGAGTG TERM 2266 1968512 - 1968534 + F 100 -20.6 -3.94812 | overlap 1968510 TGCGGCGCTGCTAAT GCGAGGGGCC TTG GGCCCCTCGC TGTTTTTGGGTAGAG AHA_1801 1968575 - 1969300 + | nitroreductase A AHA_1802 1969489 - 1970253 + | ATPase involved in DNA repair TERM 2267 1970281 - 1970297 + G 100 -13.7 -4.42062 | opp_overlap 1970280 CACTCGATACCACAC TGGGGCC GAT GGCCCCA TTTGTTTGCCAGCTG AHA_1803 1970256 - 1970801 + | hypothetical protein TERM 2268 1970828 - 1970807 - T 95 -14.4 -3.73224 | opp_overlap 1970807 CCAGGCTTGATGAAA CGGGGCCG CTTGAC CGGCCCCG TTTCATAGCCGAGAT TERM 2269 1970807 - 1970828 + T 95 -14.4 -3.72695 | opp_overlap 1970807 CCAGGCTTGATGAAA CGGGGCCG CTTGAC CGGCCCCG TTTCATAGCCGAGAT AHA_1804 1972056 - 1970848 - | major facilitator family transporter TERM 2270 1972970 - 1972997 + G 84 -4.1 -5.14563 | gap 1, overlap 1972983 1972984 GGCGGGGGGATCCGC TCTC-CATGGCG AACCG CGCCTTGCGGGA TTTTTTGCTGGCGCA AHA_1805 1972150 - 1973025 + | transcriptional regulator cysB 1973099 - 1974073 + | transcriptional regulator CysB TERM 2271 1974132 - 1974092 - T 100 -19.9 -2.85351 | opp_overlap 1974103, overlap 1974103 CGCGGCGATATGAGA GCAACAAAAAACGCCTCCC GAT GGGAGGCGTTTTTCATGGC GGCGAGCGGCGAGGC TERM 2272 1974103 - 1974121 + T 100 -16 -4.72272 | opp_overlap 1974103 1974092 GAGAGCAACAAAAAA CGCCTCCC GAT GGGAGGCG TTTTTCATGGCGGCG TERM 2273 1974121 - 1974103 - T 100 -16 -5.5353 | opp_overlap 1974103, overlap 1974092 GAGAGCAACAAAAAA CGCCTCCC GAT GGGAGGCG TTTTTCATGGCGGCG ribA 1974745 - 1974152 - | GTP cyclohydrolase II TERM 2274 1974798 - 1974777 - H 76 -2.9 -5.0133 | gap 1, opp_overlap 1974778, overlap 1974778 CAGCTGCTTAAAAAA GGGCG-GCCA GTT TAGCGCGCCT TGTGCGGAACAACCA cmk 1974995 - 1975687 + | cytidylate kinase TERM 2275 1975750 - 1975729 - f 74 -6.5 -4.34267 | opp_overlap 1975734 GCAGATAATTTAAAA CAACCCCGC TTGT GCCGGATTG CAAGTGGATGTTTCA TERM 2276 1976066 - 1976045 - g 74 -5.1 -4.56597 | overlap 1976050 CTGTCCCGCGAAAAA GCCAAGC GCCACGAA GCCTGGC TGCAGCTTGAAAAAG TERM 2277 1976097 - 1976081 - g 72 -4.4 -4.59773 | overlap 1976096 CTGCAGCTTGAAAAA GCTTAC GAAGA GCAAGC TACCGTTATCGGTAT TERM 2278 1976242 - 1976231 - g 72 -4.4 -4.65933 | CACCTGGAAAACAAA GAAC TCGA GTTC AAAGTCATCAAGCTG rpsA 1975781 - 1977451 + | 30S ribosomal protein S1 TERM 2279 1977494 - 1977464 - f 100 -18.4 -3.06133 | opp_overlap 1977469, overlap 1977452 1977469 TAATCCTTGATGCAA GAAAAGGGCGGCGT GTC ACGCCGCCCTTTTT TATCATTGGCGTAAT TERM 2280 1977469 - 1977489 + F 100 -18.3 -5.37345 | opp_overlap 1977464 1977469 CTTGATGCAAGAAAA GGGCGGCGT GTC ACGCCGCCC TTTTTTATCATTGGC TERM 2281 1977489 - 1977469 - f 100 -18.3 -4.67982 | opp_overlap 1977469, overlap 1977464 CTTGATGCAAGAAAA GGGCGGCGT GTC ACGCCGCCC TTTTTTATCATTGGC ihfB 1977547 - 1977831 + | integration host factor, beta subunit TERM 2282 1977860 - 1977841 - f 73 -6.4 -4.50943 | opp_overlap 1977842, overlap 1977842 GAATAATGCAGAAAA TGGCATAC TTGG GTATGCCT TTTTTGTTTTTATGG TERM 2283 1977842 - 1977859 + F 100 -9.9 -5.98675 | opp_overlap 1977842 1977841 AATAATGCAGAAAAT GGCATAC TTGG GTATGCC TTTTTTGTTTTTATG AHA_1811 1977988 - 1978272 + | hypothetical protein TERM 2284 1978894 - 1978867 - g 71 -8.4 -3.92522 | gap 1 CGTGAAGGGGACAAA CCCGC-CGGGCTT GCC AAGCTCAAGCGGG CGCTCAGCGTCAACC AHA_1812 1978282 - 1979448 + | hypothetical protein TERM 2285 1979468 - 1979490 + F 88 -11.2 -4.13767 | opp_overlap 1979466, overlap 1979470 CACCACAAGATCATG AGCCAGGCCG CTG CGGCCTGGTG TTTTCAGGTCGAGCC TERM 2286 1979470 - 1979488 + F 100 -16 -3.6692 | opp_overlap 1979466, overlap 1979468 CCACAAGATCATGAG CCAGGCCG CTG CGGCCTGG TGTTTTCAGGTCGAG pyrF 1979550 - 1980251 + | orotidine 5'-phosphate decarboxylase TERM 2287 1980261 - 1980282 + TF 100 -17.3 -3.05384 | opp_overlap 1980252 1980253 1980261, overlap 1980273 CGATAATGGACAGGA TGCCGGCCC GATG GGGCCGGCA TTGCATCAGGGGCGG TERM 2288 1980282 - 1980261 - Tf 90 -17.3 -2.67705 | opp_overlap 1980261 1980273, overlap 1980252 1980253 CGATAATGGACAGGA TGCCGGCCC GATG GGGCCGGCA TTGCATCAGGGGCGG AHA_1814 1980856 - 1980299 - | integral membrane protein TERM 2289 1981198 - 1981219 + GH 90 -5.7 -5.1861 | overlap 1981200 1981203 GGGAGAGGGAGACGG CCGAGCCGG CTCG CCGGGTCTG TTTTTTGCTGCTCGA TERM 2290 1981200 - 1981217 + GH 70 -6.9 -4.22314 | overlap 1981198 1981203 GAGAGGGAGACGGCC GAGCCGG CTCG CCGGGTC TGTTTTTTGCTGCTC AHA_1815 1980807 - 1981493 + | DTW domain-containing protein exsB 1981516 - 1982223 + | exsB protein AHA_1817 1982243 - 1982956 + | radical activating enzyme TERM 2291 1983060 - 1983082 + G 76 -9.1 -4.08692 | overlap 1983079 ATTCCGGAGCCTTAT CTGGTGTGG CTGGC CCGCACCGG TTTTCCCGCCGGTTC AHA_1818 1982958 - 1983188 + | hypothetical protein AHA_1819 1983185 - 1983748 + | ATP:cob(I)alamin adenosyltransferase, putative TERM 2292 1983798 - 1983764 - T 100 -21.8 -2.89881 | opp_overlap 1983774, overlap 1983767 1983774 TAGCCAGGCTACAGA CAATAAAAAACCTCGC GAT GCGAGGTTTTTTATTG CGACGATGCGGCTTT TERM 2293 1983795 - 1983767 - T 100 -17.7 -3.59698 | opp_overlap 1983774, overlap 1983764 1983774 CCAGGCTACAGACAA TAAAAAACCTCGC GAT GCGAGGTTTTTTA TTGCGACGATGCGGC TERM 2294 1983788 - 1983774 - T 100 -11.4 -5.62045 | opp_overlap 1983774, overlap 1983767 1983764 ACAGACAATAAAAAA CCTCGC GAT GCGAGG TTTTTTATTGCGACG TERM 2295 1983774 - 1983788 + T 100 -11.4 -5.4505 | opp_overlap 1983774 1983767 1983764 ACAGACAATAAAAAA CCTCGC GAT GCGAGG TTTTTTATTGCGACG AHA_1820 1984219 - 1983815 - | DNA-binding protein StpA TERM 2296 1983883 - 1983897 + g 86 -7.1 -5.00884 | CGGAAGGCATGCGGC CCTGG CCGGT CCAGG TTTTTTCCACGCCGT AHA_1821 1984799 - 1986379 + | Na(+)/H(+) antiporter family protein TERM 2297 1986410 - 1986383 - f 100 -9.8 -4.85599 | opp_overlap 1986385 1986386, overlap 1986386 GCCATCGCATAAAAA GAACAAGGGGCC GCCA GGCCCCTTGGTT TTGTTGGGGGCTTTG TERM 2298 1986385 - 1986408 + F 100 -12.4 -4.64334 | opp_overlap 1986383 1986386, overlap 1986386 CATCGCATAAAAAGA ACAAGGGGCC GCCA GGCCCCTTGG TTTTGTTGGGGGCTT TERM 2299 1986407 - 1986386 - f 100 -15.9 -4.53475 | opp_overlap 1986385 1986386, overlap 1986383 ATCGCATAAAAAGAA CAAGGGGCC GCCA GGCCCCTTG GTTTTGTTGGGGGCT TERM 2300 1986386 - 1986407 + F 100 -15.9 -3.37877 | opp_overlap 1986386 1986383, overlap 1986385 ATCGCATAAAAAGAA CAAGGGGCC GCCA GGCCCCTTG GTTTTGTTGGGGGCT tdk 1986466 - 1987047 + | thymidine kinase TERM 2301 1987103 - 1987075 - T 86 -14.7 -2.96216 | opp_overlap 1987081, overlap 1987081 CGCGATGAGTAGATA GAAAAAGGCGCCA ATC TGGCGCCTTTTTT GTTGCTGGTGGTTCA TERM 2302 1987081 - 1987097 + T 100 -13.7 -5.52023 | opp_overlap 1987075 1987081 GAGTAGATAGAAAAA GGCGCCA ATC TGGCGCC TTTTTTGTTGCTGGT TERM 2303 1987097 - 1987081 - T 100 -13.7 -5.05601 | opp_overlap 1987081, overlap 1987075 GAGTAGATAGAAAAA GGCGCCA ATC TGGCGCC TTTTTTGTTGCTGGT AHA_1823 1988453 - 1987116 - | hypothetical protein AHA_1824 1988606 - 1989067 + | hypothetical protein TERM 2304 1989164 - 1989109 - f 83 -7.7 -4.65895 | gap 3, opp_overlap 1989117 1989124, overlap 1989143 CGCCTGATGCAAAAA GCCGTTGACGCCGG--CGGGGCTT TCCCCTAAATT ACGCCCCGTTCCAGCG-CAACGGC GCAGCGAACACAGTG TERM 2305 1989345 - 1989304 - f 100 -26.3 -3.57144 | opp_overlap 1989309 1989314, overlap 1989309 1989314 TCCCTCACCGCCAAA TAAAACAAAAGGGCCTGTC TTGT GACAGGCCCTTTTGTTTTA TCCGGTGACGGGCGG TERM 2306 1989340 - 1989309 - f 100 -21.8 -4.87803 | opp_overlap 1989309 1989314, overlap 1989304 1989314 CACCGCCAAATAAAA CAAAAGGGCCTGTC TTGT GACAGGCCCTTTTG TTTTATCCGGTGACG TERM 2307 1989309 - 1989340 + F 100 -21.8 -4.4009 | opp_overlap 1989309 1989304 1989314, overlap 1989314 CACCGCCAAATAAAA CAAAAGGGCCTGTC TTGT GACAGGCCCTTTTG TTTTATCCGGTGACG TERM 2308 1989335 - 1989314 - f 100 -15.9 -5.34857 | opp_overlap 1989314 1989309, overlap 1989309 1989304 CCAAATAAAACAAAA GGGCCTGTC TTGT GACAGGCCC TTTTGTTTTATCCGG TERM 2309 1989314 - 1989335 + F 100 -15.9 -5.18371 | opp_overlap 1989309 1989304 1989314, overlap 1989309 CCAAATAAAACAAAA GGGCCTGTC TTGT GACAGGCCC TTTTGTTTTATCCGG TERM 2310 1989477 - 1989506 + F 72 -12.3 -2.72043 | opp_overlap 1989484, overlap 1989484 ACCCAGCGTACAGAT TGAAAAACCGACC TGAT GGTCGGTTTTTTG CTTTGGGGAAGAATT TERM 2311 1989484 - 1989499 + F 100 -10.4 -5.37593 | opp_overlap 1989484, overlap 1989477 GTACAGATTGAAAAA CCGACC TGAT GGTCGG TTTTTTGCTTTGGGG TERM 2312 1989499 - 1989484 - f 100 -10.4 -4.72846 | opp_overlap 1989484 1989477 GTACAGATTGAAAAA CCGACC TGAT GGTCGG TTTTTTGCTTTGGGG TERM 2313 1989604 - 1989592 - f 71 -10.5 -3.18264 | GCTTGCAGTGATGAA CGGCC GCA GGCCG CCCCGAAGGAGTGAG TERM 2314 1989698 - 1989657 - f 100 -20.5 -3.57144 | opp_overlap 1989661 1989667, overlap 1989661 1989667 TCCTTCATCGCCAAA TAAAGTAAAAGGGCTTGTC GAAA GACAGGCCCTTTTACTTTA TGGGCTGAAGACAGC TERM 2315 1989694 - 1989661 - f 100 -16.9 -4.42806 | opp_overlap 1989661 1989667, overlap 1989657 1989667 TCATCGCCAAATAAA GTAAAAGGGCTTGTC GAAA GACAGGCCCTTTTAC TTTATGGGCTGAAGA TERM 2316 1989661 - 1989694 + F 100 -19.1 -3.89346 | opp_overlap 1989657 1989661 1989667, overlap 1989667 TCATCGCCAAATAAA GTAAAAGGGCTTGTC GAAA GACAGGCCCTTTTAC TTTATGGGCTGAAGA TERM 2317 1989688 - 1989667 - f 95 -10.1 -4.72863 | opp_overlap 1989667 1989661, overlap 1989661 1989657 CCAAATAAAGTAAAA GGGCTTGTC GAAA GACAGGCCC TTTTACTTTATGGGC TERM 2318 1989667 - 1989688 + F 100 -12.3 -4.61873 | opp_overlap 1989661 1989657 1989667, overlap 1989661 CCAAATAAAGTAAAA GGGCTTGTC GAAA GACAGGCCC TTTTACTTTATGGGC TERM 2319 1989834 - 1989853 + F 93 -11.4 -4.39571 | opp_overlap 1989834 CTTACCCAATGTAAA GCCCGATC TGAT GGTCGGGC TTTTGCGTTTCTGGC TERM 2320 1989853 - 1989834 - f 73 -9.2 -3.76952 | opp_overlap 1989834 CTTACCCAATGTAAA GCCCGATC TGAT GGTCGGGC TTTTGCGTTTCTGGC TERM 2321 1990019 - 1989986 - f 85 -16.1 -2.66733 | opp_overlap 1989986 1989991, overlap 1989991 1989995 CGCGAAGGCACACTA TCCAAGTAACCGGCC CGAT GGTCGGTCACTTGGA TATATGGGTGATGCT TERM 2322 1989986 - 1990019 + F 87 -16.1 -2.92642 | opp_overlap 1989986 1989991 1989995, overlap 1989991 CGCGAAGGCACACTA TCCAAGTAACCGGCC CGAT GGTCGGTCACTTGGA TATATGGGTGATGCT TERM 2323 1990417 - 1990446 + F 70 -8.9 -3.62275 | opp_overlap 1990424, overlap 1990418 AAGTGAGGGGGCGTT TTAATTATTTGTT TTTT AACAAATAATTAG TTTGGCATGGTCACT AHA_1826 1990515 - 1991033 + | hemolysin co-regulated protein TERM 2324 1991043 - 1991069 + F 95 -10.9 -4.65747 | gap 1, overlap 1991035 1991045 GCGTAACTTGCCCAT C-AGGGGCACTG CTTG CGGTGCCCCTTG TTTTCTTAACGCTTA TERM 2325 1991045 - 1991066 + F 100 -13.7 -4.43307 | overlap 1991035 1991043 GTAACTTGCCCATCA GGGGCACTG CTTG CGGTGCCCC TTGTTTTCTTAACGC TERM 2326 1992611 - 1992630 + G 72 -4.3 -4.56775 | gap 1 CCATCCCGCGCATCG GC-CACGA GGTCA TCGTGAGC TTTTTGGAAGGGGAT AHA_1827 1991311 - 1993542 + | VgrG protein AHA_1828 1993544 - 1994863 + | hypothetical protein AHA_1829 1994873 - 1995862 + | hypothetical protein AHA_1830 1995977 - 1996522 + | hypothetical protein AHA_1831 1996643 - 1998031 + | hypothetical protein TERM 2327 1998352 - 1998364 + F 86 -4.1 -5.35365 | TAGATTTGTAGCTTA CAGTA ACG TGCTG TTTTTGTTGTGTTTT TERM 2328 1998619 - 1998640 + F 80 -11.7 -3.40867 | overlap 1998622 ATCCACCCATATCGT CAACTGTCA TTTT TGACAGTTG TTGGTTAATCCATCG AHA_1832 1998704 - 1999207 + | hypothetical protein TERM 2329 2000369 - 2000344 - g 77 -3.9 -4.84017 | overlap 2000345 2000349 AACTCGGTACAAAAA CCCAAGGTGTT CCCG AACACCAAGGA AGGCCGGGAGGCGGA AHA_1833 1999252 - 2000724 + | hypothetical protein AHA_1834 2000731 - 2001162 + | hypothetical protein TERM 2330 2001414 - 2001432 + GF 77 -7.4 -4.23892 | CCTGCGTCCCGTGCC CAGCATGA CCA TCATGCAG TTTTCGGTCATTCCG AHA_1835 2001166 - 2002932 + | hypothetical protein TERM 2331 2003592 - 2003561 - gf 77 -7.8 -4.32034 | opp_overlap 2003578 2003579 TCAGGATCAGCAAAA TCGCCTCGGCGGCG CCTG CGCCACCTTGGGGA GCGATTTTGTCATCG AHA_1836 2002896 - 2003894 + | hypothetical protein TERM 2332 2003916 - 2003904 - f 70 -3.3 -4.70626 | GAATAAGTGCAAAAA TCAGC AGC GCAGA AAATTTAACTACAGG AHA_1837 2003951 - 2005201 + | hypothetical protein AHA_1838 2005201 - 2005716 + | putative lipoprotein AHA_1839 2005719 - 2007053 + | hypothetical protein AHA_1840 2007145 - 2007855 + | hypothetical protein TERM 2333 2008302 - 2008316 + G 70 -10 -3.55761 | AAGGTCAATCGCGAG CTGCTG CGC CAGCAG TTTGACGAGTGGGTC TERM 2334 2009199 - 2009183 - g 93 -13.7 -4.11692 | CAGCCACCTGCAAAA CGCGCTG CGC CAGCGCG AGCTGGAGATCCGCC AHA_1841 2007876 - 2010518 + | ClpA/ClpB family protein TERM 2335 2010786 - 2010813 + G 70 -7.6 -4.08945 | gap 1, overlap 2010787 CCTGGGACTCCCTCT ACGGCGGTGCCCG CAT CGAGCAC-GCCGG TTTTCGCGCACTGCT AHA_1842 2010521 - 2012059 + | sigma-54 dependent transcriptional regulator TERM 2336 2012465 - 2012481 + G 76 -10.1 -3.86897 | ATGGTCAACCGAGTG CCGGCTC CCA GAGCTGG TTTATCCGGGATCAG AHA_1843 2012059 - 2012664 + | hypothetical protein TERM 2337 2012836 - 2012851 + G 74 -10.4 -3.73224 | overlap 2012834 ATCTCAATGCGGTGG CCGAGG CCTG CCTCGG TTTGCTGGAGAGTCG TERM 2338 2013654 - 2013668 + G 73 -11.4 -3.54424 | CTTTCGGCCGAGGTG GCCGAG AAA CTCGGC TTTGGGGCGGTGGCC AHA_1844 2012673 - 2014109 + | ImpA-related domain-containing protein TERM 2339 2015156 - 2015170 + G 73 -11.4 -3.54029 | opp_overlap 2015133, overlap 2015144 CGGCTCGATGCCGCC CAGCGC AAC GCGCTG TTCTCGTTCGTGCGC AHA_1845 2014151 - 2017636 + | ImcF family protein TERM 2340 2017644 - 2017662 + F 100 -16 -3.21912 | TCTATTGATCGCGTC GGGGGCAC GTA GTGCCCCC TTCCTGCGTTGGAAG TERM 2341 2018564 - 2018518 - g 95 -11.3 -4.49311 | opp_overlap 2018519, overlap 2018519 ATCAGCAGGAGAAAA CCGTGGCGGCCCAGCGTCTGG TGCAG CCGGCCGCCGAGCTGCCCCGA GCCCTCAGCTATGAC TERM 2342 2018563 - 2018519 - g 74 -12.6 -3.28864 | opp_overlap 2018519, overlap 2018518 TCAGCAGGAGAAAAC CGTGGCGGCCCAGCGTCTGG TGCAG CCGGCCGCCGAGCTGCCCCG AGCCCTCAGCTATGA AHA_1846 2017683 - 2019113 + | ImpA domain-containing protein AHA_1847 2019371 - 2019658 + | PAAR motif-containing protein AHA_1848 2019669 - 2021714 + | Rhs element Vgr family protein TERM 2343 2022797 - 2022772 - g 71 -9.7 -3.75153 | gap 1, overlap 2022774 CCTGTCGAATTCAAA GACGATGCGGTC GTT GACCGCAGCG-C AAACCCGATAGCGGT TERM 2344 2022796 - 2022774 - g 79 -13.4 -3.46068 | overlap 2022772 TGTCGAATTCAAAGA CGATGCGGTC GTT GACCGCAGCG CAAACCCGATAGCGG AHA_1849 2021749 - 2024304 + | hypothetical protein AHA_1850 2024307 - 2024711 + | hypothetical protein TERM 2345 2025135 - 2025155 + F 71 -6.1 -4.2461 | overlap 2025136 GTCGTGCTGAAGATG TCGGCGATA GAC TATCGCTGC TTTGTTAGTACAGAT TERM 2346 2026407 - 2026429 + F 88 -13.5 -3.34013 | opp_overlap 2026423 ATATAGTTACCACCT GACACCGGT CTCAA ACCGGTGTC TTGCTTACACCACTC TERM 2347 2026623 - 2026649 + F 75 -6.7 -4.49316 | gap 1, overlap 2026615 2026619 2026616 TGCTGATCGAGCAGG CGATT-TGCTCG TCAT TGAGCACAATCG TTTGTTCTTGGTGGT TERM 2348 2027841 - 2027825 - g 70 -8 -4.08216 | CGACCGGTGTTAAAA CGCATG GTCTG CATGCG GTAGTAGTCGGGGCA AHA_1854 2027356 - 2028219 + | FolD bifunctional protein TERM 2349 2028317 - 2028263 - T 76 -12.5 -2.71791 | gap 1, opp_overlap 2028279, overlap 2028279 ACTTCTCCTGTAAAT TGCAGCAATAAAAAAACCGGCAA-CC TTGC GGCTTGCCGGTTTTTTTATTTATCCA GTTCGACTCTTACAT TERM 2350 2028279 - 2028301 + T 100 -9.9 -6.02919 | gap 1, opp_overlap 2028263 2028279 GCAGCAATAAAAAAA CCGGCAA-CC TTGC GGCTTGCCGG TTTTTTTATTTATCC TERM 2351 2028301 - 2028279 - T 100 -9.9 -5.84381 | gap 1, opp_overlap 2028279, overlap 2028263 GCAGCAATAAAAAAA CCGGCAA-CC TTGC GGCTTGCCGG TTTTTTTATTTATCC cspD 2028545 - 2028327 - | cold shock domain-containing protein CspD clpS 2028774 - 2029091 + | ATP-dependent Clp protease adaptor protein ClpS TERM 2352 2029541 - 2029528 - g 76 -5.9 -4.57569 | overlap 2029529 TTACTTCCTGAAAAA GGCCG AGAT CAGCC GGCTGGACGTGGTCA TERM 2353 2031355 - 2031392 + G 70 -9.9 -3.5764 | opp_overlap 2031352 2031355 2031357 TGAGTTGATAAATGA CAGCCTCAGCTTTGACT ATCA GGTCAATGTTGAAGCTG TTTCCCACTAAGCTT clpA 2029151 - 2031403 + | ATP-dependent Clp protease, ATP-binding subunit ClpA TERM 2354 2031417 - 2031468 + T 85 -16 -2.52464 | opp_overlap 2031423 2031433, overlap 2031423 2031433 AAGCTTAACGCTGTT GGAAAACCACAAAAAACCCCAACC GGAA GGTTGGGGTTTTTTGCTGAATTCC TGGCTTAGCGAGAGC TERM 2355 2031423 - 2031463 + T 83 -15 -2.52933 | gap 1, opp_overlap 2031423 2031433, overlap 2031417 2031433 AACGCTGTTGGAAAA CCA-CAAAAAACCCCAACC GGAA GGTTGGGGTTTTTTGCTGA ATTCCTGGCTTAGCG TERM 2356 2031462 - 2031423 - T 100 -18.8 -4.08064 | opp_overlap 2031423 2031417 2031433, overlap 2031433 AACGCTGTTGGAAAA CCACAAAAAACCCCAACC GGAA GGTTGGGGTTTTTTGCTG AATTCCTGGCTTAGC TERM 2357 2031433 - 2031452 + T 100 -13.6 -5.18357 | opp_overlap 2031423 2031433, overlap 2031423 2031417 GAAAACCACAAAAAA CCCCAACC GGAA GGTTGGGG TTTTTTGCTGAATTC TERM 2358 2031452 - 2031433 - T 100 -13.6 -5.4588 | opp_overlap 2031433 2031423 2031417, overlap 2031423 GAAAACCACAAAAAA CCCCAACC GGAA GGTTGGGG TTTTTTGCTGAATTC infA 2031712 - 2031473 - | translation initiation factor IF-1 AHA_1859 2032477 - 2031761 - | arginyl-tRNA-protein transferase aat 2033181 - 2032474 - | leucyl/phenylalanyl-tRNA--protein transferase AHA_1861 2033201 - 2033671 + | putative surface antigen AHA_1862 2035029 - 2033782 - | response regulator protein TERM 2359 2035050 - 2035069 + r 100 -13.6 -4.58076 | opp_overlap 2035050 TCCTTAAAGTAAAAA GGCATGCC TCGC GGCATGCC TTTTATATCCCTTGT TERM 2360 2035069 - 2035050 - R 100 -13.6 -4.98531 | opp_overlap 2035050 TCCTTAAAGTAAAAA GGCATGCC TCGC GGCATGCC TTTTATATCCCTTGT trxB 2036268 - 2035087 - | thioredoxin-disulfide reductase TERM 2361 2036200 - 2036165 - G 86 -11.8 -4.13343 | opp_overlap 2036195 2036196, overlap 2036155 2036168 2036193 AGAAAGGGCTGAAAA CATGCCCTGTCGCGGA AGGC TCCACAACCGGGCGTG GCACGCATTCCTATT TERM 2362 2036730 - 2036752 + H 100 -4.8 -5.85425 | GTACACTGGCCACAG CCATGCCTAC GCG GTATTCATGG TTTTTTATTTCTTTA lrp 2036934 - 2037425 + | leucine-responsive transcriptional regulator TERM 2363 2037510 - 2037466 - f 72 -12.2 -2.59431 | opp_overlap 2037475 2037479, overlap 2037479 CCTTGCGACAAGTCA CGACATTCAGAAACGAGCGG CCGGT CCGCTCGTTTCTTCTTATCG AGTCGGTTGTGAATA TERM 2364 2037475 - 2037501 + F 100 -16.7 -3.80733 | opp_overlap 2037466 2037479, overlap 2037479 AAGTCACGACATTCA GAAACGAGCGG CCGGT CCGCTCGTTTC TTCTTATCGAGTCGG TERM 2365 2037479 - 2037497 + F 95 -11.7 -4.51812 | opp_overlap 2037466 2037479, overlap 2037475 CACGACATTCAGAAA CGAGCGG CCGGT CCGCTCG TTTCTTCTTATCGAG TERM 2366 2037497 - 2037479 - f 90 -11.7 -3.95787 | opp_overlap 2037479 2037475, overlap 2037466 CACGACATTCAGAAA CGAGCGG CCGGT CCGCTCG TTTCTTCTTATCGAG TERM 2367 2037810 - 2037794 - g 76 -5.7 -4.62336 | AGGGGAGGTGAAAAA CCTCGCC GGC AGCGCGG GGGCCTGGCTCGCCG TERM 2368 2040099 - 2040077 - g 71 -6.2 -4.24948 | CGAGCAGATGGAAAA CCAGGGCA TCGTCAG CGCCCCGG GCGGCAATGGTCAGC AHA_1865 2037627 - 2040149 + | FtsK/SpoIIIE family protein TERM 2369 2040171 - 2040195 + F 100 -15 -4.38712 | CCCCTCTATCATCCT GGCCATGCCC CCTGC GGGCGTGGCC TTTTATCGAGATAGC lolA 2040227 - 2040835 + | outer membrane lipoprotein carrier protein LolA TERM 2370 2042273 - 2042245 - g 74 -12.5 -3.28712 | GCGTGGGCTGGAGAA GCAGATAGCCCAG AAG CTCGACTATCTGC ATGAGCTGGATCGGC AHA_1867 2040959 - 2042314 + | recombination factor protein RarA serS 2042654 - 2043949 + | seryl-tRNA synthetase TERM 2371 2043992 - 2043967 - f 95 -17.7 -2.63596 | opp_overlap 2043967 2043970, overlap 2043970 GCTCATTGCAGACGA CAACGCCATGG CATG CCATGGCGTTG TGCATTATGGCGTCG TERM 2372 2043967 - 2043992 + F 95 -17.7 -2.60079 | opp_overlap 2043967 2043970, overlap 2043970 GCTCATTGCAGACGA CAACGCCATGG CATG CCATGGCGTTG TGCATTATGGCGTCG TERM 2373 2043989 - 2043970 - f 89 -13.6 -3.47078 | opp_overlap 2043967 2043970, overlap 2043967 CATTGCAGACGACAA CGCCATGG CATG CCATGGCG TTGTGCATTATGGCG TERM 2374 2043970 - 2043989 + F 88 -13.6 -3.45054 | opp_overlap 2043970 2043967, overlap 2043967 CATTGCAGACGACAA CGCCATGG CATG CCATGGCG TTGTGCATTATGGCG TERM 2375 2044161 - 2044173 + G 75 -3.3 -4.95758 | overlap 2044162 TTGATTACGCCATCA TCGGC ATC GTCGG TTTTTCTGCTCTCAT TERM 2376 2044458 - 2044484 + G 100 -15.2 -5.53991 | GTTTTGGCGCTATTC GCGGGGTACTGA TCG TCAGTGCCCTGC TTTTTTTCATGGATA cvpA 2044136 - 2044624 + | CvpA family protein TERM 2377 2045038 - 2045014 - g 82 -14.3 -3.25823 | overlap 2045017 CCGTCGCCACATCAA CACCACCTCGG ACT CCGAGGTGCTG CTGAACGTGCTGGCG TERM 2378 2045035 - 2045017 - g 74 -14.6 -2.51547 | overlap 2045014 TCGCCACATCAACAC CACCTCGG ACT CCGAGGTG CTGCTGAACGTGCTG purF 2044646 - 2046166 + | amidophosphoribosyltransferase TERM 2379 2046198 - 2046215 + F 95 -12.7 -4.09628 | opp_overlap 2046198 GGTGTTGCAACGAGA TGGGGGC CCAG GCCCCCA TTGTTGTTTCCGCTC TERM 2380 2046215 - 2046198 - f 79 -12.7 -2.90075 | opp_overlap 2046198 GGTGTTGCAACGAGA TGGGGGC CCAG GCCCCCA TTGTTGTTTCCGCTC AHA_1871 2046352 - 2047110 + | tRNA-(ms[2]io[6]A)-hydroxylase TERM 2381 2047178 - 2047197 + T 100 -10.7 -5.82281 | ATTTTTGAGCGCAAT TCCCGGC CCCTGA GCCGGGA TTTTTTTGTCTCTTT sapF 2048050 - 2047265 - | peptide ABC transporter, ATP-binding protein SapF sapD 2049104 - 2048106 - | peptide ABC transporter, ATP-binding protein SapD sapC 2049997 - 2049104 - | peptide ABC transporter, permease protein SapC sapB 2050992 - 2050033 - | peptide ABC transporter, permease protein SapB sapA 2052560 - 2050995 - | peptide ABC transporter, periplasmic peptide-binding protein SapA TERM 2382 2052594 - 2052608 + r 74 -2.8 -4.84017 | overlap 2052584 GGGTTTGAGCATTCT CATTGT CGA ACCATG TTTTTATACGAAGTT AHA_1877 2053715 - 2052681 - | PSP operon transcriptional activator TERM 2383 2053412 - 2053445 + g 76 -13.1 -3.53091 | gap 1, opp_overlap 2053407 2053406 2053404 CGAGAAACAGGGTGC CGCCGTC-GGCCCGCT CGA AGCGGCCCTGGTGGCG TTTGGCGGCGCCGGT AHA_1878 2053911 - 2054591 + | phage shock protein A pspB 2054595 - 2054831 + | phage shock protein B AHA_1880 2054860 - 2055342 + | phage shock protein C TERM 2384 2055365 - 2055380 + F 72 -11.8 -2.83403 | overlap 2055364 CGGCGCGATGGCCCC GCCGGC GCGG GCCGGC CTTTGATGGCGGGCA TERM 2385 2056282 - 2056294 + G 75 -3.3 -4.82901 | opp_overlap 2056277 2056280, overlap 2056278 2056283 AGCAGTACAAGCAGC ACCTG GTG CAGGG TTTTTATGAGCAGCA AHA_1881 2055450 - 2056880 + | amino acid regulated cytosolic protein TERM 2386 2056980 - 2056965 - g 78 -6.8 -4.59027 | gap 1, overlap 2056967 AACGATCAGATAAAA GC-GCGG CCA CCGCTGC AGGGCAAGGTGATCC AHA_1882 2056947 - 2057972 + | hypothetical protein TERM 2387 2058027 - 2058050 + F 100 -18.2 -5.00616 | opp_overlap 2058021 TTACAATTATCCGCC GCAGCCGACC CTTG GGTCGGCTGC TTTTTTGGGGGGCAA phhA 2058144 - 2058938 + | phenylalanine 4-monooxygenase AHA_1884 2058993 - 2059331 + | pterin-4-alpha-carbinolamine dehydratase AHA_1885 2059351 - 2059452 + | pterin-4-alpha-carbinolamine dehydratase TERM 2388 2059467 - 2059502 + F 100 -18.2 -4.85599 | opp_overlap 2059464 2059488, overlap 2059468 AACGTCTATAGATGG CGCGGGCCTGCCCGGT GAAA ACGGGGCGGGCCCGCA TTTTTATGGGCTGGC TERM 2389 2059468 - 2059501 + F 100 -21.7 -3.50877 | opp_overlap 2059464 2059488, overlap 2059467 ACGTCTATAGATGGC GCGGGCCTGCCCGGT GAAA ACGGGGCGGGCCCGC ATTTTTATGGGCTGG tyrR 2059587 - 2061134 + | transcriptional regulatory protein TyrR AHA_1887 2061312 - 2061881 + | hypothetical protein AHA_1888 2061878 - 2063146 + | inner membrane protein YfiN AHA_1889 2063149 - 2063637 + | OmpA family protein TERM 2390 2063660 - 2063677 + T 100 -12.7 -5.28176 | opp_overlap 2063660 GTGTAGATAAAAAAA GAGCGCC TGAT GGCGCTC TTTTTTGTGGCTCGC TERM 2391 2063677 - 2063660 - T 100 -12.7 -5.71712 | opp_overlap 2063660 GTGTAGATAAAAAAA GAGCGCC TGAT GGCGCTC TTTTTTGTGGCTCGC AHA_1890 2064474 - 2063695 - | TerC protein AHA_1891 2064548 - 2065663 + | ATP-NAD kinase AHA_1892 2065774 - 2066052 + | hypothetical protein TERM 2392 2066215 - 2066180 - g 72 -7.5 -4.16842 | opp_overlap 2066180 CGTATTGCCAATAAA CTGCCGCTCGAAATG CTCTAC CAATGGGAGCGGCAG TGTCCTGACCGAGTC TERM 2393 2067013 - 2066996 - g 76 -7.7 -4.30719 | CTGCCCCAGAAGAAA CTCGAGC TGCT GCTCAAG ATCCCGTTCGTGTCG TERM 2394 2067721 - 2067706 - g 85 -10.4 -4.28254 | CTGGAACATCGAAAA CGGGGT GCTC ACCCCG ACCATGAAGATCCGC AHA_1893 2066150 - 2067814 + | long-chain acyl-CoA synthetase TERM 2395 2067886 - 2067846 - T 100 -24.3 -2.73875 | opp_overlap 2067851 2067854 2067857, overlap 2067851 TGCTGCTGAACACCA CAAAACAACAAGGGGAGCC ACT GGCTCCCCTTGTTGTTTCA GGCAACGGCAGGTCA TERM 2396 2067851 - 2067881 + T 100 -24.2 -3.53012 | opp_overlap 2067846 2067851, overlap 2067854 2067857 CTGAACACCACAAAA CAACAAGGGGAGCC ACT GGCTCCCCTTGTTG TTTCAGGCAACGGCA TERM 2397 2067881 - 2067851 - T 100 -24.2 -4.55023 | opp_overlap 2067851 2067854 2067857, overlap 2067846 CTGAACACCACAAAA CAACAAGGGGAGCC ACT GGCTCCCCTTGTTG TTTCAGGCAACGGCA TERM 2398 2067854 - 2067878 + T 100 -20.1 -3.90744 | opp_overlap 2067851 2067846, overlap 2067851 2067857 AACACCACAAAACAA CAAGGGGAGCC ACT GGCTCCCCTTG TTGTTTCAGGCAACG TERM 2399 2067857 - 2067875 + T 100 -16 -4.08557 | opp_overlap 2067851 2067846, overlap 2067854 2067851 ACCACAAAACAACAA GGGGAGCC ACT GGCTCCCC TTGTTGTTTCAGGCA cdd 2068780 - 2067899 - | cytidine deaminase AHA_1895 2069654 - 2068968 - | LrgB family protein AHA_1896 2070007 - 2069651 - | LrgA family protein TERM 2400 2070978 - 2070956 - g 89 -14.8 -3.83026 | opp_overlap 2070944 2070961 2070964, overlap 2070957 GCTGCCGAGATCAAA GGCGCCGGCT GCG AGCCGGCGCT CTGGGTGGCCCCCTT TERM 2401 2070977 - 2070957 - g 90 -18.3 -2.89602 | opp_overlap 2070944 2070961 2070964, overlap 2070956 CTGCCGAGATCAAAG GCGCCGGCT GCG AGCCGGCGC TCTGGGTGGCCCCCT TERM 2402 2071662 - 2071680 + G 75 -11.6 -3.61178 | TCGAGCTTTGCGCGG CGCGCGCC CCT GGCGCCCG TTTCGAGTCGATGGA AHA_1897 2070167 - 2071876 + | alpha-galactosidase TERM 2403 2071895 - 2071918 + T 91 -15.4 -3.06696 | opp_overlap 2071892 GGCTGGCAATCATGA TTCAGGCTCC CACG GGAGCCTGAA TGTATTGCGAAAGGC AHA_1898 2072488 - 2071949 - | hypothetical protein AHA_1899 2074304 - 2072610 - | exodeoxyribonuclease I TERM 2404 2073482 - 2073528 + gr 75 -11.4 -3.33261 | overlap 2073527 CCAGCACGTCGGAGA GCGCATCGTGGGCGTTGGCGTG GGC CACGCCGTTGGCGACGGTGAGC TTCTCCAGCTTGAAG TERM 2405 2074251 - 2074225 - GR 100 -14.5 -4.04318 | gap 1, opp_overlap 2074225 2074224 2074223, overlap 2074227 GGGAGAGAGTACAAA GAGACAGCCCCG TTGA CGGGGCTGTC-C AGGTTTTCTGGTGGG TERM 2406 2074250 - 2074227 - GR 100 -18.2 -3.61175 | opp_overlap 2074225 2074224 2074223, overlap 2074225 GAGAGAGTACAAAGA GACAGCCCCG TTGA CGGGGCTGTC CAGGTTTTCTGGTGG araA 2075770 - 2074271 - | L-arabinose isomerase TERM 2407 2074634 - 2074646 + gr 76 -10.5 -3.7104 | opp_overlap 2074627 2074625 CGCAAACAGCAGGCG GGCCG GGT CGGCC TTCTTGCCTATCCCT araD 2076482 - 2075784 - | L-ribulose-5-phosphate 4-epimerase araB 2078170 - 2076479 - | ribulokinase AHA_1903 2078532 - 2079515 + | L-arabinose ABC transporter, periplasmic L-arabinose-binding protein araG 2079588 - 2081087 + | L-arabinose transporter ATP-binding protein araH 2081136 - 2082137 + | L-arabinose transporter permease protein araC 2082282 - 2083193 + | DNA-binding transcriptional regulator AraC TERM 2408 2083249 - 2083279 + T 77 -7.4 -4.29227 | overlap 2083252 TGGTCACCCCATGAT GGGGTGGCTGCCTG GGG CAGGGGGCCGCTGC TTTCTTCATCATTCC AHA_1907 2084022 - 2083288 - | LysR family transcriptional regulator AHA_1908 2084193 - 2084029 - | LysR family transcriptional regulator AHA_1909 2084317 - 2085183 + | pirin, N-terminal:Pirin, C-terminal TERM 2409 2085215 - 2085192 - T 89 -16.8 -2.70354 | opp_overlap 2085192, overlap 2085188 2085195 GGCGTGATAAATGGA CAAGGCCCTC GCAT GAGGGCCTTG TTTTTATGAGGCTGC TERM 2410 2085192 - 2085215 + T 100 -16.8 -4.84359 | opp_overlap 2085192 2085188 2085195 GGCGTGATAAATGGA CAAGGCCCTC GCAT GAGGGCCTTG TTTTTATGAGGCTGC TERM 2411 2085212 - 2085195 - T 85 -12.7 -3.50047 | opp_overlap 2085192, overlap 2085192 2085188 GTGATAAATGGACAA GGCCCTC GCAT GAGGGCC TTGTTTTTATGAGGC rpmJ 2085359 - 2085234 - | ribosomal protein L36 rpmE-1 2085625 - 2085356 - | ribosomal protein L31 TERM 2412 2085677 - 2085699 + H 91 -3.5 -5.53436 | AAATAAATCATGCCT TTGTTGAGA ATGAA TATCAACAA TTTTTTGTCTTGTGT AHA_1912 2085882 - 2086130 + | DNA-damage-inducible protein I TERM 2413 2086195 - 2086179 - T 100 -13.7 -5.4505 | opp_overlap 2086179 TTGCCGAACAAAAAA CGCAGCC CAA GGCTGCG TTTTTTGTTGCTGCT TERM 2414 2086179 - 2086195 + T 100 -13.7 -5.52023 | opp_overlap 2086179 TTGCCGAACAAAAAA CGCAGCC CAA GGCTGCG TTTTTTGTTGCTGCT AHA_1913 2087087 - 2086266 - | hypothetical protein AHA_1914 2087615 - 2087112 - | hypothetical protein TERM 2415 2087738 - 2087713 - R 100 -19.1 -4.4078 | opp_overlap 2087713 TTGGCGCAATGAAAA GGGCCGTCATC ACGG GATGACGGCCC TGTTCGGTCAAGGGG TERM 2416 2087713 - 2087738 + r 100 -19.1 -3.08679 | opp_overlap 2087713 TTGGCGCAATGAAAA GGGCCGTCATC ACGG GATGACGGCCC TGTTCGGTCAAGGGG AHA_1915 2089468 - 2087756 - | hypothetical protein TERM 2417 2088355 - 2088377 + g 78 -14.9 -3.09327 | opp_overlap 2088358 CCAGCGAGATGCAGA GCAGGCCGA GGCCA TCGGCCTGC TGTTCGCTGCGATCC TERM 2418 2089171 - 2089139 - G 73 -11.2 -3.64487 | CCAGATCCCGAAGAA GCCACCGACGCCGT AGCCG AGGGCGTCGAGGGC GAAGATCATGGGGCC TERM 2419 2089504 - 2089533 + r 77 -7.9 -4.36914 | gap 1, opp_overlap 2089505, overlap 2089505 GAAATAATTTGTAAA AGTGCCGCTTTACG GCA TG-AAAGCGGCACG TTTTCTGACAAAACC TERM 2420 2089505 - 2089532 + r 74 -11.4 -3.21934 | gap 1, opp_overlap 2089505, overlap 2089504 AAATAATTTGTAAAA GTGCCGCTTTACG GCA TG-AAAGCGGCAC GTTTTCTGACAAAAC TERM 2421 2089532 - 2089505 - R 88 -11.4 -4.17523 | opp_overlap 2089504 2089505 AAATAATTTGTAAAA GTGCCGCTTT ACGGCATG AAAGCGGCAC GTTTTCTGACAAAAC TERM 2422 2089601 - 2089547 - R 100 -14.6 -4.36914 | gap 3, opp_overlap 2089560, overlap 2089556 2089557 2089560 CGTTTTCTGACAAAA CCGGCTAAAGCGACCTGGCGGGCCA TCGCCAAG TGGCCCGCCAGATC-CTT-A-CCGG GTAGACGGCCCCTGA TERM 2423 2089594 - 2089556 - R 95 -14.7 -3.61219 | gap 1, opp_overlap 2089560, overlap 2089547 2089557 2089560 ACAAAACCGGCTAAA GCGACCTGGCGGGCCA TCGCCAAG TGGCCCGCCAGATC-C TTACCGGGTAGACGG TERM 2424 2089594 - 2089557 - R 83 -14.9 -2.76009 | opp_overlap 2089560, overlap 2089556 2089547 2089560 CAAAACCGGCTAAAG CGACCTGGCGGGCCA TCGCCAAG TGGCCCGCCAGATCC TTACCGGGTAGACGG TERM 2425 2089560 - 2089591 + r 79 -13.7 -2.71731 | opp_overlap 2089556 2089557 2089547 2089560 AACCGGCTAAAGCGA CCTGGCGGGCCAT CGCCAA GTGGCCCGCCAGA TCCTTACCGGGTAGA TERM 2426 2089591 - 2089560 - R 83 -15.2 -2.64651 | opp_overlap 2089560, overlap 2089556 2089557 2089547 AACCGGCTAAAGCGA CCTGGCGGGCCA TCGCCAAG TGGCCCGCCAGA TCCTTACCGGGTAGA AHA_1916 2091253 - 2089595 - | 5'-nucleotidase TERM 2427 2091336 - 2091312 - R 100 -18.6 -2.87132 | TGGCGGGGGGAGATA CCAGCCCGGC GGCAG GCCGGGCTGG TAGAGTGAGGGAGAG dcuC 2092736 - 2091384 - | C4-dicarboxylate transporter DcuC AHA_1918 2093102 - 2093671 + | hypothetical protein TERM 2428 2093690 - 2093727 + T 100 -20.1 -3.1855 | opp_overlap 2093699, overlap 2093699 CGACAGGATTTGAGC GAACAAAAAGGGCTCCC GTCG GGGAGCCCTTTTTGTTG TTGCGTCTTGCCGAG TERM 2429 2093718 - 2093699 - T 100 -15 -5.10461 | opp_overlap 2093690 2093699 TTGAGCGAACAAAAA GGGCTCCC GTCG GGGAGCCC TTTTTGTTGTTGCGT TERM 2430 2093699 - 2093718 + T 100 -15 -5.30348 | opp_overlap 2093699, overlap 2093690 TTGAGCGAACAAAAA GGGCTCCC GTCG GGGAGCCC TTTTTGTTGTTGCGT AHA_1919 2095751 - 2093754 - | tRNA (5-aminomethyl-2-thiouridylate) methyltransferase TERM 2431 2096964 - 2096954 - g 79 -8.2 -4.2558 | overlap 2096907 2096955 GACCCTGGACGAAAA GGCC GTG GGCC TGCCCATCGTGCGCG fabB 2095863 - 2097074 + | 3-oxoacyl-[acyl-carrier-protein] synthase I TERM 2432 2097115 - 2097100 - T 100 -11.8 -5.44721 | opp_overlap 2097100 ATGAGTCGAAAAAAA GGCGCC GCAA GGCGCC TTTTTCATTGGGTGA TERM 2433 2097100 - 2097115 + T 100 -11.8 -4.88407 | opp_overlap 2097100 ATGAGTCGAAAAAAA GGCGCC GCAA GGCGCC TTTTTCATTGGGTGA AHA_1921 2097628 - 2097134 - | acetyltransferase TERM 2434 2098138 - 2098110 - R 95 -14.7 -3.59738 | opp_overlap 2098116, overlap 2098116 CATTAGAGCGGCAAA TAAAAAGGCGGTC AAT GACCGCCTTTGTA ACAAAAAATCTGAAA TERM 2435 2098132 - 2098116 - R 100 -13.7 -5.27938 | opp_overlap 2098116, overlap 2098110 AGCGGCAAATAAAAA GGCGGTC AAT GACCGCC TTTGTAACAAAAAAT TERM 2436 2098116 - 2098132 + r 93 -13.7 -3.85817 | opp_overlap 2098110 2098116 AGCGGCAAATAAAAA GGCGGTC AAT GACCGCC TTTGTAACAAAAAAT gltA 2099448 - 2098162 - | type II citrate synthase TERM 2437 2100058 - 2100076 + G 70 -7.4 -3.97834 | AGGATTTGAGACTGT GGTGTCCA TCA TGGACAAC TTTCTGGTCAAATTC sdhC 2099873 - 2100262 + | succinate dehydrogenase cytochrome b556 large membrane subunit AHA_1924 2100256 - 2100600 + | succinate dehydrogenase hydrophobic membrane anchor protein sdhA 2100602 - 2102368 + | succinate dehydrogenase flavoprotein subunit AHA_1926 2102385 - 2103101 + | succinate dehydrogenase iron-sulfur protein TERM 2438 2103143 - 2103172 + F 81 -12.3 -3.55444 | gap 1 GGCCCGACCTCTGGA TAGCCATCC-GTCA CCA TGGCTGGATGGCTA TTTAAACCCTACAAG TERM 2439 2105887 - 2105857 - g 70 -11.8 -3.13403 | overlap 2105855 2105866 CTGGTGTCAGGAAGA GCCGCAGAACCAGG GCG CCTGGTACTGCACC CGTCATCACTACGAC kgd 2103158 - 2106034 + | alpha-ketoglutarate decarboxylase sucB 2106127 - 2107314 + | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase TERM 2440 2107362 - 2107320 - f 71 -8.3 -3.91084 | gap 1, overlap 2107321 GGACGTCTAAGCAAA TCGGC-CGGACCGGCAAGCC CTCT GGCTTGACGGCTCGCGCCAC AAGCTTGCCGCCGGA TERM 2441 2107361 - 2107321 - f 75 -11.8 -2.94329 | gap 1, overlap 2107320 GACGTCTAAGCAAAT CGGC-CGGACCGGCAAGCC CTCT GGCTTGACGGCTCGCGCCA CAAGCTTGCCGCCGG TERM 2442 2107397 - 2107365 - f 100 -19.2 -3.28712 | CGGCTCGCGCCACAA GCTTGCCGCCGGAC CTCCC GTTCGGCGGCAAGC GGGGGCCAACCCGGC TERM 2443 2107457 - 2107473 + F 71 -10.1 -3.53761 | opp_overlap 2107457 TTAGAAAGATAACGA GGGGCCA CCT TGGCCTC TTTCACAGGGGATTG AHA_1929 2107538 - 2108704 + | succinyl-CoA synthetase beta chain AHA_1930 2108704 - 2109576 + | succinyl-CoA synthetase alpha chain TERM 2444 2109622 - 2109606 - f 100 -15.1 -4.83615 | opp_overlap 2109606 TATCTCTGATAAAAA GCCGCCC AAT GGGCGGC TTTTTTATGGTCGTA TERM 2445 2109606 - 2109622 + F 100 -15.1 -5.32882 | opp_overlap 2109606 TATCTCTGATAAAAA GCCGCCC AAT GGGCGGC TTTTTTATGGTCGTA TERM 2446 2110227 - 2110240 + F 82 -5.3 -5.04175 | overlap 2110232 2110234 2110236 AGTCTTATCCTGAAG CTTTC TCGG GAAAG TTTTTCTCTGATTAC TERM 2447 2110716 - 2110729 + G 75 -3.1 -4.83169 | GGGTATTGGATTGAC CCATT TTTT GATGG TTTTTATGCAGAGCT AHA_1931 2110509 - 2111084 + | hypothetical protein AHA_1932 2111264 - 2111719 + | hypothetical protein TERM 2448 2111828 - 2111787 - T 95 -14.6 -3.2794 | gap 2, opp_overlap 2111789 2111789, overlap 2111788 CGCGAGCCATACCAA CTGCGAAGGGGCAGGGGAGT CATC ACTCTCCTGCCCCTTCG--G CTTTCTGGCTCCTTC TERM 2449 2111829 - 2111788 - T 90 -17.3 -2.5655 | opp_overlap 2111789 2111789, overlap 2111787 GCGAGCCATACCAAC TGCGAAGGGGCAGGGGAGT CATC ACTCTCCTGCCCCTTCGGC TTTCTGGCTCCTTCC TERM 2450 2111789 - 2111829 + T 100 -22.8 -3.95153 | gap 1, opp_overlap 2111787 2111788, overlap 2111789 CGAGCCATACCAACT G-CGAAGGGGCAGGGGAGT CATC ACTCTCCTGCCCCTTCGGC TTTCTGGCTCCTTCC TERM 2451 2111789 - 2111828 + T 100 -23 -2.9661 | opp_overlap 2111787 2111788, overlap 2111789 CGAGCCATACCAACT GCGAAGGGGCAGGGGAGT CATC ACTCTCCTGCCCCTTCGG CTTTCTGGCTCCTTC AHA_1933 2113269 - 2111863 - | glycine/D-amino acid oxidase TERM 2452 2112111 - 2112091 - G 73 -12.5 -3.14931 | TTCATCGCGCACCAA GGCCGCCAG GAT CTGGCCGCC CATCCAGCTCTGCGC AHA_1934 2115036 - 2113288 - | ABC transporter, permease protein TERM 2453 2113353 - 2113339 - G 72 -4.2 -4.56597 | opp_overlap 2113341, overlap 2113341 GGCGCGGCTCAAAAA CAGCTG GAG CAGCTT GATGGTGGCGGCGGC AHA_1935 2116127 - 2115033 - | ferric cations import ATP-binding protein FbpC 2 TERM 2454 2116343 - 2116316 - R 100 -10.6 -5.0538 | overlap 2116317 GGCGATGCCAAAAAA GCGAAGGCCAAC TTGA GTTGACCTTCGG CAATGAATTGTGCGA TERM 2455 2116342 - 2116317 - R 95 -14.1 -3.62746 | overlap 2116316 GCGATGCCAAAAAAG CGAAGGCCAAC TTGA GTTGACCTTCG GCAATGAATTGTGCG TERM 2456 2116382 - 2116351 - R 100 -16.8 -3.33815 | gap 1 ACCTTCGGCAATGAA TTGTGCGATGGCGAC GTG GT-GCCATCGCACAA ACCAGCCTTCAGCGG AHA_1936 2117419 - 2116400 - | ABC transporter, periplasmic binding protein AHA_1937 2118484 - 2117540 - | 2-aminoethylphosphonate transport, repressor phnW 2118513 - 2119655 + | 2-aminoethylphosphonate--pyruvate transaminase AHA_1939 2119652 - 2121076 + | 4-aminobutyrate aminotransferase phnX 2121069 - 2121908 + | phosphonoacetaldehyde hydrolase TERM 2457 2121993 - 2122010 + T 100 -14.1 -5.06414 | opp_overlap 2121993 TCAGGCATAAAAAAA CCGGCGC CTTG GCGCCGG TTTTTGTTCACCGAG TERM 2458 2122010 - 2121993 - T 100 -14.1 -5.64274 | opp_overlap 2121993 TCAGGCATAAAAAAA CCGGCGC CTTG GCGCCGG TTTTTGTTCACCGAG pflB 2124353 - 2122032 - | formate acetyltransferase TERM 2459 2122537 - 2122549 + g 81 -6.3 -4.71426 | GCACCACGGTAGGTG TTCAG CTT CTGAA TTTTCTTCATGAAGC AHA_1942 2125208 - 2124360 - | putative formate transporter FocA TERM 2460 2125572 - 2125556 - R 95 -10.8 -4.63479 | GACCATAAAGCAAAA GGGGCC ATCAG GGCCCC TTCACATACTACCAC AHA_1943 2127349 - 2125589 - | hypothetical protein TERM 2461 2127442 - 2127427 - R 100 -11.8 -5.08824 | opp_overlap 2127427 TTGGCAGGCAAAAAA CGGGGC CCAT GCCCCG TTTTGCTCTCCATTC TERM 2462 2127427 - 2127442 + r 93 -11.8 -4.36931 | opp_overlap 2127427 TTGGCAGGCAAAAAA CGGGGC CCAT GCCCCG TTTTGCTCTCCATTC AHA_1944 2127791 - 2127477 - | SugE protein asd-1 2128131 - 2129246 + | aspartate-semialdehyde dehydrogenase TERM 2463 2129268 - 2129287 + F 100 -15 -5.4477 | opp_overlap 2129268 TGCACCCAGCATGAA CAGGGGGC CGCG GCCCCCTG TTTTTTTGCGACTTT TERM 2464 2129287 - 2129268 - f 95 -15 -3.22298 | opp_overlap 2129268 TGCACCCAGCATGAA CAGGGGGC CGCG GCCCCCTG TTTTTTTGCGACTTT TERM 2465 2129656 - 2129674 + F 72 -11 -3.1082 | opp_overlap 2129644, overlap 2129652 2129655 ACAGCCGGGTTGCAG GCTGCCAG CCT TTGGCAGC TATATTGACTGGCTC TERM 2466 2129953 - 2129930 - g 88 -3.9 -5.33785 | overlap 2129931 2129932 AAGGAGCAGAAAAAA GTGGC-CGATC CGCT GATCGTGCC-C TATCAGCAATATCGG AHA_1946 2129849 - 2132626 + | M16B family peptidase TERM 2467 2132693 - 2132665 - T 100 -14.5 -4.4078 | opp_overlap 2132665 TTGCCGCAAGCAAAA CAGCCTGCCCCTT GGC AGGGGGCGGGCTG TTTTTTTGCGCTCAA TERM 2468 2132665 - 2132693 + T 100 -18.9 -5.44119 | opp_overlap 2132665 TTGCCGCAAGCAAAA CAGCCTGCCCCTT GGC AGGGGGCGGGCTG TTTTTTTGCGCTCAA AHA_1947 2133886 - 2132723 - | methionine gamma-lyase AHA_1948 2135049 - 2133979 - | 2OG-Fe(II) oxygenase superfamily protein TERM 2469 2134956 - 2134942 - G 100 -9.2 -5.05601 | GATCAGATAGAAAAA GCCCAC CTC GCGGGC CGCCCGGCCAAGGGT TERM 2470 2135250 - 2135235 - R 76 -3.3 -5.04597 | overlap 2135247 AGTTATATACAAAAA TCGAA ATAGAA TTCGA CACCCATCCGGGTGG TERM 2471 2135464 - 2135447 - R 100 -12.7 -4.73448 | opp_overlap 2135447 ACAGAGATGCAAAAA GGGAGGC TGAT GCCTCCC TTTGTGTGACGGACG TERM 2472 2135447 - 2135464 + r 93 -12.7 -4.03234 | opp_overlap 2135447 ACAGAGATGCAAAAA GGGAGGC TGAT GCCTCCC TTTGTGTGACGGACG TERM 2473 2135531 - 2135548 + r 74 -4.7 -4.68506 | ACCCAGGGTGAAGCG CTGGCGC AGGT GGGCCGG TTTTTCCGCTTCGTT AHA_1949 2136148 - 2135510 - | YwnB AHA_1950 2136250 - 2137155 + | LysR family transcriptional regulator TERM 2474 2137246 - 2137223 - T 100 -18.2 -4.53349 | opp_overlap 2137225 CAAGGATCAAACAAA GAGGGCAGCC CGCA GGCTGCCCTC TGTCGATGCAATGCT TERM 2475 2137225 - 2137244 + T 86 -15 -2.91582 | opp_overlap 2137223 AGGATCAAACAAAGA GGGCAGCC CGCA GGCTGCCC TCTGTCGATGCAATG AHA_1951 2138021 - 2137281 - | acetoacetyl-CoA reductase AHA_1952 2138205 - 2139182 + | transcriptional activator TERM 2476 2139305 - 2139323 + F 85 -8.8 -4.48877 | GTTTAGGTTGCCGGA TGGGGCCA GAG TGGCCGCA TTTTCTCCCTCTTTC TERM 2477 2140223 - 2140180 - g 70 -8 -3.99324 | overlap 2140183 CTCTATTACCAGAAA GACCCGCAAGCCGGCATC TACACCAC GGTACCGGCCAGCGGCTC GGTCAAATCCAACCC AHA_1953 2139436 - 2141580 + | ferrichrome-iron receptor TERM 2478 2141587 - 2141607 + F 95 -18.3 -2.87564 | GTATTCTGACCCTGC GTCCCGGGC CGC GCCCGGGAC TCTCTCACCCCATGA TERM 2479 2142277 - 2142311 + G 80 -14.8 -3.24425 | opp_overlap 2142269, overlap 2142270 2142270 CAGAGCATCTGGCGG GCTGGCAGCCGGCGCC CTG GCCGCCAGCGGCCGGC TTGGTCGGTTATGTG AHA_1954 2141619 - 2142425 + | hypothetical protein TERM 2480 2142451 - 2142466 + T 100 -11.8 -4.73388 | opp_overlap 2142451 CCTGTGTGATGACAA GCCGCC TTAA GGCGGC TTTTTACTGCGCCTT TERM 2481 2142466 - 2142451 - T 80 -11.8 -3.40403 | opp_overlap 2142451 CCTGTGTGATGACAA GCCGCC TTAA GGCGGC TTTTTACTGCGCCTT metR 2143390 - 2142470 - | HTH-type transcriptional regulator MetR metE 2143564 - 2145837 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 2482 2145903 - 2145878 - T 88 -13.3 -3.44622 | opp_overlap 2145879, overlap 2145879 2145881 TACGGGCATAACGAA CGAGGGAAGGC GCAA GCCTTCCCTCT TTTTTTGTTGGTTGA TERM 2483 2145879 - 2145902 + T 100 -16.8 -5.87996 | opp_overlap 2145878 2145879 2145881 ACGGGCATAACGAAC GAGGGAAGGC GCAA GCCTTCCCTC TTTTTTTGTTGGTTG TERM 2484 2145902 - 2145879 - T 89 -16.8 -2.66452 | opp_overlap 2145879, overlap 2145878 2145881 ACGGGCATAACGAAC GAGGGAAGGC GCAA GCCTTCCCTC TTTTTTTGTTGGTTG TERM 2485 2145900 - 2145881 - T 81 -13.6 -2.87274 | opp_overlap 2145879, overlap 2145879 2145878 GGGCATAACGAACGA GGGAAGGC GCAA GCCTTCCC TCTTTTTTTGTTGGT AHA_1957 2147046 - 2145925 - | heptosyltransferase family protein TERM 2486 2146411 - 2146399 - G 76 -6.2 -4.56597 | GGCCCCGGTGAAAAA GCCG ATGAG CGGC CGCGCCGGGTAGTCG TERM 2487 2146830 - 2146846 + g 70 -7.9 -4.07568 | CTATCTCGGCGTGGG GGTGGGC GCT GCGCACC TTTTGCAAGAAGGGC TERM 2488 2147392 - 2147406 + G 73 -12.8 -3.15861 | AAAGAGAGTTGTTAC GGCGCC CTG GGCGCC TTCGTCGGGCTGCTG AHA_1958 2147332 - 2148459 + | HPP family protein TERM 2489 2148458 - 2148485 + T 83 -12.8 -3.30159 | opp_overlap 2148464, overlap 2148464 AGCCGGTCAGTCCAT AAAAAAGGCCCC TCGC GGGGCCTTTTTG TTGTCAGCGGCTTGG TERM 2490 2148479 - 2148464 - T 100 -11.8 -5.26316 | opp_overlap 2148458 2148464 TCAGTCCATAAAAAA GGCCCC TCGC GGGGCC TTTTTGTTGTCAGCG TERM 2491 2148464 - 2148479 + T 100 -11.8 -5.18726 | opp_overlap 2148464, overlap 2148458 TCAGTCCATAAAAAA GGCCCC TCGC GGGGCC TTTTTGTTGTCAGCG AHA_1959 2150436 - 2148502 - | amidohydrolase TERM 2492 2148755 - 2148784 + g 78 -9.9 -4.07568 | gap 1, opp_overlap 2148743 2148742, overlap 2148756 2148757 AATGCATCGTCGCTG C-CGGCCGCCCGCA CGA TGCCGGCGGCCATG TTTTCAAACGGGCGG TERM 2493 2148756 - 2148782 + g 81 -13.6 -3.63744 | opp_overlap 2148743 2148742, overlap 2148755 2148757 ATGCATCGTCGCTGC CGGCCGCCCGCA CGA TGCCGGCGGCCA TGTTTTCAAACGGGC TERM 2494 2148757 - 2148781 + g 84 -17.1 -2.78032 | opp_overlap 2148743 2148742, overlap 2148756 2148755 TGCATCGTCGCTGCC GGCCGCCCGCA CGA TGCCGGCGGCC ATGTTTTCAAACGGG AHA_1960 2150636 - 2151295 + | putative transcription regulator TERM 2495 2151355 - 2151333 - T 100 -17.8 -4.17048 | opp_overlap 2151333 CTGCGGTCAAAACAA GAGGGAGTGC CAG GCACTCCCTC TTTGGGGTGAAACGG TERM 2496 2151333 - 2151355 + T 100 -17.8 -3.59979 | opp_overlap 2151333 CTGCGGTCAAAACAA GAGGGAGTGC CAG GCACTCCCTC TTTGGGGTGAAACGG AHA_1961 2152644 - 2151391 - | D-amino acid dehydrogenase small subunit AHA_1962 2154316 - 2152796 - | cryptochrome/photolyase TERM 2497 2153329 - 2153309 - G 77 -4.5 -4.82901 | overlap 2153311 GCCGCTCCAGAAAAA GCCGGGCAG CGA CCGCTTGGC CCCGAGATAATTGGC TERM 2498 2153653 - 2153613 - G 71 -5.9 -4.3739 | CAGTGGGCCAGAAAA TGGGCCAGCAACTCGCGAC TCT GGCGCCGGCTGATGGGCCA GGGCAGGCTGCTGAC TERM 2499 2154843 - 2154857 + H 73 -9.2 -3.89215 | overlap 2154844 TTCCTCACCGCTGAT TGGCGG CAC CCGCCG TTTGAATTTGTCAGC TERM 2500 2154940 - 2154922 - H 73 -10.2 -3.38046 | opp_overlap 2154918, overlap 2154920 TCCCGATTTCAAACA CACTGGCG TTG CGCCGGTG AGGAGTCTTTTATGC tnaA 2154952 - 2156337 + | tryptophanase TERM 2501 2156396 - 2156375 - T 100 -15.9 -5.5208 | opp_overlap 2156375 2156378 TCACAACATAAAAAA GAAGCCCGC ATAT GCGGGCTTC TTTGTGGGCGCTGAT TERM 2502 2156375 - 2156396 + T 100 -15.9 -3.87075 | opp_overlap 2156375, overlap 2156378 TCACAACATAAAAAA GAAGCCCGC ATAT GCGGGCTTC TTTGTGGGCGCTGAT TERM 2503 2156378 - 2156393 + T 90 -11.8 -4.06687 | opp_overlap 2156375, overlap 2156375 CAACATAAAAAAGAA GCCCGC ATAT GCGGGC TTCTTTGTGGGCGCT AHA_1964 2157365 - 2156421 - | periplasmic binding protein TERM 2504 2157083 - 2157102 + g 72 -13.6 -2.71483 | overlap 2157085 GGTTGGGGTTGTCCA GATCGCCG ACCA CGGCGATC TCCTTGCCCGCCTGT TERM 2505 2158078 - 2158105 + G 81 -7.6 -4.39571 | opp_overlap 2158069, overlap 2158080 AGGAGAGCCTGTTCA AGGCGCTCTACC CCAG GGTGGGGCGCTA TTTTGACTTTCTCGA TERM 2506 2158080 - 2158103 + G 78 -12.4 -3.79633 | opp_overlap 2158069, overlap 2158078 GAGAGCCTGTTCAAG GCGCTCTACC CCAG GGTGGGGCGC TATTTTGACTTTCTC AHA_1965 2157522 - 2158277 + | phosphopantetheinyl transferase TERM 2507 2158335 - 2158300 - T 100 -17.8 -3.58726 | opp_overlap 2158311, overlap 2158301 2158303 2158311 CGCGCCGAGACACAA GCATCAAAAAACCGCC TTTC GGCGGTTTTTTGATGG GGCTCAGGCCGGTTG TERM 2508 2158334 - 2158301 - T 100 -21.3 -2.75022 | opp_overlap 2158311, overlap 2158300 2158303 2158311 GCGCCGAGACACAAG CATCAAAAAACCGCC TTTC GGCGGTTTTTTGATG GGGCTCAGGCCGGTT TERM 2509 2158332 - 2158303 - T 95 -18.1 -2.91997 | opp_overlap 2158311, overlap 2158301 2158300 2158311 GCCGAGACACAAGCA TCAAAAAACCGCC TTTC GGCGGTTTTTTGA TGGGGCTCAGGCCGG TERM 2510 2158311 - 2158324 + T 100 -9.5 -5.14965 | opp_overlap 2158303 2158301 2158300 2158311 ACAAGCATCAAAAAA CCGCC TTTC GGCGG TTTTTTGATGGGGCT TERM 2511 2158324 - 2158311 - T 100 -9.5 -5.22794 | opp_overlap 2158311, overlap 2158303 2158301 2158300 ACAAGCATCAAAAAA CCGCC TTTC GGCGG TTTTTTGATGGGGCT AHA_1966 2159142 - 2158339 - | iron chelate ABC transporter ATP-binding protein AHA_1967 2160331 - 2159186 - | iron chelate ABC transporter permease TERM 2512 2159822 - 2159803 - GR 73 -10.6 -3.34398 | overlap 2159788 2159785 2159801 2159804 CTGCGGCGGCAAACA GGGCGCCC AGTG GGGCGGCC CACCAGGGCCAGCTG AHA_1968 2161283 - 2160267 - | iron chelate ABC transporter permease TERM 2513 2161342 - 2161323 - R 100 -15 -4.57533 | opp_overlap 2161328 AATAACAGCAGAAAA GGGAGCCC TGAC GGGCTCCC TGCGGGGTTTACAGC AHA_1969 2163324 - 2161351 - | TonB-dependent siderophore receptor TERM 2514 2162698 - 2162710 + g 71 -9.1 -3.8211 | overlap 2162695 GCCTTCTACCACCAG GCTGC CGA GCAGC TTGTTGTCGATCAGG TERM 2515 2162763 - 2162740 - G 72 -12.4 -3.25823 | opp_overlap 2162730 GGCGCCGGAGACGAA GGCGTTGCCA CGGT TGGCATCGCC ACCATCACCCTTGGT TERM 2516 2163390 - 2163418 + r 74 -7.3 -4.12474 | overlap 2163391 CGGTGGCTCACTGAC TTCCTTGTCTGGC GGT GCCAGACTCGGGG TTATTGTTATTCCTT AHA_1970 2164800 - 2163382 - | multidrug transporter TERM 2517 2164747 - 2164730 - G 85 -5.6 -4.96848 | overlap 2164734 CTTTTCATAGAAAAA TGAAGG GCCTGA CCTTCA CGGCGCGCATTGCTC TERM 2518 2165481 - 2165443 - g 73 -13.1 -3.21747 | gap 1 GCAGGGCACCATCAA CCGGGGGCAGAGCGCCAC CGAG GTGA-GCGGTGCCCCCGG TCAGTGGCTGACGGT AHA_1971 2164862 - 2165614 + | hypothetical protein AHA_1972 2166169 - 2165675 - | inner membrane protein YfeZ TERM 2519 2166255 - 2166235 - R 95 -14.7 -3.35813 | opp_overlap 2166231 GGGGACGGGAATTAA TCGGGGGGC CAT GCCCCCCAA TCCGCTTATCTCTTT corA 2167237 - 2166290 - | magnesium and cobalt transport protein CorA TERM 2520 2167454 - 2167430 - R 95 -5.5 -5.40072 | overlap 2167432 2167433 GTTCGCTCAAAAAAA CAGCGAGGTCG GAG CAGCCACGCCG ACCTCGAAACGGGTG TERM 2521 2167461 - 2167432 - R 86 -9.9 -4.34482 | overlap 2167430 2167433 TCGCTCAAAAAAACA GCGAGGTCGGAGC AGCC ACGCCGACCTCGA AACGGGTGATCCCGG TERM 2522 2167460 - 2167433 - R 87 -13.4 -3.19966 | overlap 2167430 2167432 CGCTCAAAAAAACAG CGAGGTCGGAGC AGCC ACGCCGACCTCG AAACGGGTGATCCCG AHA_1974 2167757 - 2167650 - | electron transfer flavoprotein-ubiquinone oxidoreductase AHA_1975 2169400 - 2167757 - | electron transfer flavoprotein-ubiquinone oxidoreductase TERM 2523 2168753 - 2168767 + g 70 -10 -3.53811 | GCCCTGGCCGGGGGG GAGCTG CCA CAGCTC TTTGAAGCCGATGGC AHA_1976 2169516 - 2170274 + | electron transfer flavoprotein beta-subunit AHA_1977 2170375 - 2171301 + | electron transfer flavoprotein alpha-subunit TERM 2524 2171371 - 2171389 + F 100 -10.3 -5.24531 | GCATGTTCTCTGCAA GCCCTGA CCCGT TCAGGGC TTTTTTCTGCCAACT serC 2171525 - 2172613 + | phosphoserine aminotransferase TERM 2525 2172602 - 2172617 + F 75 -6 -4.59853 | GATGGCTTTGCCAAG CGCCAC GGCT GAGGCG TTTTTCCCCGATTGC TERM 2526 2172632 - 2172658 + F 100 -19.4 -5.1101 | overlap 2172634 GTTTTTCCCCGATTG CCGACGCCGGGG ACT CCCCGGCGTCTG TTTTTTCCGTGATGC TERM 2527 2172634 - 2172656 + F 100 -20.6 -4.1821 | overlap 2172632 TTTTCCCCGATTGCC GACGCCGGGG ACT CCCCGGCGTC TGTTTTTTCCGTGAT aroA 2172701 - 2174068 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2528 2174075 - 2174098 + F 100 -15.3 -4.45117 | opp_overlap 2174073 2174077 CGCGCGTGATGAACC CAGGCCCGC CTCGCT GCGGGCCTG TTTCTTTGCGCTGTC TERM 2529 2174096 - 2174077 - f 72 -12.1 -2.56596 | opp_overlap 2174075, overlap 2174073 CGCGTGATGAACCCA GGCCCGC CTCGCT GCGGGCC TGTTTCTTTGCGCTG TERM 2530 2174879 - 2174842 - g 70 -10.6 -3.61398 | gap 1, overlap 2174843 GGTGGGCTTCAAGAA CGGCACCGACGG-CACC ATCAA GGTGGCCATCGACGCCA TCGGAGCCGCCAGTG AHA_1980 2174282 - 2175337 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2531 2175402 - 2175384 - T 100 -16 -5.29716 | opp_overlap 2175384 GCAAGACAATAAAAA GCGCGACC TCG GGTCGCGC TTTTTTGTTGGAGCG TERM 2532 2175384 - 2175402 + T 100 -16 -5.4505 | opp_overlap 2175384 GCAAGACAATAAAAA GCGCGACC TCG GGTCGCGC TTTTTTGTTGGAGCG AHA_1981 2177035 - 2175425 - | methyl-accepting chemotaxis protein TERM 2533 2177660 - 2177695 + G 83 -7.5 -4.5852 | gap 1, opp_overlap 2177656 GACGGACATGAGCGC CGACGAGCTGGCGATG CTGGC CGCCGCCATC-CGTCG TTTTCCTTTGACTTC AHA_1982 2177274 - 2178653 + | coproporphyrinogen III oxidase TERM 2534 2178720 - 2178692 - T 83 -9.5 -4.08111 | opp_overlap 2178697, overlap 2178695 2178696 CAAAGAGATGAGAAA CAAGGGGGGGCAC CTG ATGTGCCCCCTTG TTCGTTATGGCTGGT TERM 2535 2178719 - 2178695 - T 70 -7 -4.13973 | opp_overlap 2178697, overlap 2178692 2178696 AGAGATGAGAAACAA GGGGGGGCAC CTGAT GTGCCCCCTT GTTCGTTATGGCTGG TERM 2536 2178697 - 2178717 + T 100 -14 -3.86312 | opp_overlap 2178696 2178695 2178692 AGATGAGAAACAAGG GGGGGCAC CTGAT GTGCCCCC TTGTTCGTTATGGCT xseA 2180089 - 2178725 - | exodeoxyribonuclease VII, large subunit TERM 2537 2179581 - 2179565 - G 70 -7.2 -4.03234 | GGTCGGGTAGATAAA CACCGG CAGAT CCGGCG CGCGGCGCCTCAGCA TERM 2538 2179846 - 2179871 + g 78 -11.7 -3.68222 | GCACCTGCATGCCAT CCTGCGGGCGG AAGG CCACCCGCCGG TTGTTGCCCTTGAAC AHA_1984 2181126 - 2180197 - | putative transporter TERM 2539 2180599 - 2180548 - G 70 -12.2 -3.22491 | gap 1 AAAGGGCAGCAGGAA CAGGCT-GGCACCCAGCTGGCTGCC AAA GGCCACCAGCTTGGCATCGAGCCCG CCGCGATGGGTGATC TERM 2540 2180824 - 2180800 - G 85 -9.9 -4.3534 | GTTGAAGCAGGAAAA GCCGATGAGGG CCC CCATCAGCGGC GTGGTGGCGTTGAGG AHA_1985 2181684 - 2181265 - | biopolymer transport exbD1 protein AHA_1986 2182439 - 2181684 - | MotA/TolQ/ExbB proton channel family protein tonB-1 2183245 - 2182442 - | outer membrane receptor-mediated transport energizer protein TonB TERM 2541 2182478 - 2182496 + g 70 -7.3 -4.03586 | overlap 2182486 GATGGTGACTTTTGC CGAGGCC TCGAC GGCCACG TTGTTCTGTTTGGCA AHA_1988 2185383 - 2183497 - | potassium transporter guaB 2185831 - 2187294 + | inosine-5'-monophosphate dehydrogenase TERM 2542 2187288 - 2187327 + F 85 -4.8 -5.26316 | opp_overlap 2187300, overlap 2187300 CCCCAACTATCGGAT GGGCTGATAAAACGGGGC TGCG GCCCCGTTTCTCCACCGC TTTTTTATCCCGTGC TERM 2543 2187300 - 2187315 + F 86 -11.8 -3.8709 | opp_overlap 2187300, overlap 2187288 GATGGGCTGATAAAA CGGGGC TGCG GCCCCG TTTCTCCACCGCTTT TERM 2544 2187315 - 2187300 - f 93 -11.8 -4.3739 | opp_overlap 2187300 2187288 GATGGGCTGATAAAA CGGGGC TGCG GCCCCG TTTCTCCACCGCTTT TERM 2545 2188388 - 2188373 - g 80 -6 -4.7657 | opp_overlap 2188384, overlap 2188375 GAAAAAGCTGAAAAA CGCCCG CTGG CTGGCG CAAGGCACCATCTAT guaA 2187378 - 2188967 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 2546 2189007 - 2189033 + F 91 -9.5 -4.652 | opp_overlap 2189012, overlap 2189012 AAACATAAAAATGTA AAAAAGACGCC CTTGC GGCGTCTTTTC TTTTTCCAATCGTTT TERM 2547 2189012 - 2189028 + F 100 -9.4 -5.27023 | opp_overlap 2189012, overlap 2189007 TAAAAATGTAAAAAA GACGCC CTTGC GGCGTC TTTTCTTTTTCCAAT TERM 2548 2189028 - 2189012 - f 100 -9.4 -5.30575 | opp_overlap 2189007 2189012 TAAAAATGTAAAAAA GACGCC CTTGC GGCGTC TTTTCTTTTTCCAAT TERM 2549 2189089 - 2189116 + F 73 -6.2 -4.45083 | overlap 2189091 2189092 TGCTTTCTTCCCTCC CTGCCTCTGTCA GATA TGACAGGGGGTG TTTTATGGATCTCGC AHA_1991 2189196 - 2189618 + | hypothetical protein TERM 2550 2189690 - 2189705 + F 100 -10.4 -5.05113 | opp_overlap 2189690 TCCAGCAACAAGAAA GACGCC TTAG GGCGTC TTTTCTTTATCTAGG TERM 2551 2189705 - 2189690 - f 93 -10.4 -4.48713 | opp_overlap 2189690 TCCAGCAACAAGAAA GACGCC TTAG GGCGTC TTTTCTTTATCTAGG TERM 2552 2189835 - 2189849 + F 79 -2.8 -5.16237 | GCTCGCTAGCATACT GGCT CGGTAAC AGCC TTTTTTCGTCAAGTT AHA_1992 2190341 - 2191150 + | hypothetical protein TERM 2553 2191192 - 2191219 + T 100 -12.2 -4.81852 | gap 1 TAGAGTGTTGTAGTT GTAG-GGTGCAAT GAA ATTGCACCTCTAC TTTTGTTCCTTCTAG TERM 2554 2191369 - 2191353 - T 90 -5 -5.24551 | CCAAAGCAACAAAAA GGGGCG ATCTG CGTCCC GACTCTGCTAATGCC AHA_1993 2192319 - 2191492 - | ada regulatory protein AHA_1994 2193282 - 2192371 - | short chain dehydrogenase AHA_1995 2193264 - 2194799 + | leucine-rich repeat-containing protein kinase TERM 2555 2194878 - 2194905 + FH 100 -12.8 -4.70613 | opp_overlap 2194883 2194884, overlap 2194885 ATGACAAAAAGATGT CAAAAGGGGGCC TTCG GGCCCTTTTTTG TTTTGTTCCGCTTTT TERM 2556 2194885 - 2194898 + FH 100 -9.5 -5.92399 | opp_overlap 2194884 2194883, overlap 2194878 AAAGATGTCAAAAGG GGGCC TTCG GGCCC TTTTTTGTTTTGTTC tpm 2195015 - 2195668 + | thiopurine S-methyltransferase TERM 2557 2195920 - 2195939 + T 100 -15 -5.10461 | ATTATGGTTTTTCCA GCCGACCC CACG GGGTCGGC TTTTTATTGGCTGCA AHA_1997 2198751 - 2195977 - | peptidase insulinase family protein sixA 2198914 - 2199381 + | phosphohistidine phosphatase SixA AHA_1999 2199506 - 2199721 + | hypothetical protein TERM 2558 2199746 - 2199776 + F 100 -13.4 -4.62783 | gap 1, overlap 2199747 CACCTCGCTGATCCG C-GTCATGCCCGC CACCGT GCGGGCATGACTG TTTTTGGGCTCCCTC TERM 2559 2199747 - 2199774 + F 100 -17.1 -3.92746 | overlap 2199746 ACCTCGCTGATCCGC GTCATGCCCGC CACCGT GCGGGCATGAC TGTTTTTGGGCTCCC AHA_2000 2199922 - 2200839 + | drug/metabolite exporter family transporter TERM 2560 2200864 - 2200847 - T 100 -12.7 -5.28778 | opp_overlap 2200847 ACGAGTGAGAAAAAA GACCGCC GAAA GGCGGTC TTTTTGTCTGCGGGG TERM 2561 2200847 - 2200864 + T 100 -12.7 -4.96848 | opp_overlap 2200847 ACGAGTGAGAAAAAA GACCGCC GAAA GGCGGTC TTTTTGTCTGCGGGG AHA_2001 2202505 - 2200889 - | periplasmic murein peptide-binding protein TERM 2562 2202811 - 2202827 + H 100 -6.5 -5.76633 | opp_overlap 2202810 2202809 2202811, overlap 2202812 GGTTACAAAACAAGG CTGCCGA GGA TCGGCAC TTTTTTTGTCTATGC TERM 2563 2202812 - 2202826 + H 80 -10 -4.04353 | opp_overlap 2202810 2202811 2202809, overlap 2202811 GTTACAAAACAAGGC TGCCGA GGA TCGGCA CTTTTTTTGTCTATG fbp 2202890 - 2203924 + | fructose-1,6-bisphosphatase TERM 2564 2204098 - 2204128 + T 100 -19.9 -3.53012 | opp_overlap 2204098 2204103, overlap 2204103 ACCAGCCAACATAGA CAAAACGGGAGCC ATCAA GGCTCCCGTTTTG TTTGGGCGAGCGGCA TERM 2565 2204128 - 2204098 - T 100 -19.9 -3.11339 | opp_overlap 2204098 2204103, overlap 2204103 ACCAGCCAACATAGA CAAAACGGGAGCC ATCAA GGCTCCCGTTTTG TTTGGGCGAGCGGCA TERM 2566 2204123 - 2204103 - T 100 -14 -4.68124 | opp_overlap 2204103 2204098, overlap 2204098 CCAACATAGACAAAA CGGGAGCC ATCAA GGCTCCCG TTTTGTTTGGGCGAG TERM 2567 2204103 - 2204123 + T 100 -14 -4.86731 | opp_overlap 2204098 2204103, overlap 2204098 CCAACATAGACAAAA CGGGAGCC ATCAA GGCTCCCG TTTTGTTTGGGCGAG mfd 2207628 - 2204164 - | transcription-repair coupling factor TERM 2568 2207193 - 2207173 - G 70 -12.5 -2.88544 | CTCCACCGCCACATA GCCCGCCTC GGC GAGGCGCGC GCGCAGCTGCTGCAG AHA_2004 2208213 - 2207638 - | hypothetical protein TERM 2569 2208318 - 2208336 + G 72 -11.6 -3.30124 | TTTTTCAGCCACTGT CGCTGGCC ATC GGCCTGCG TTATGCAGGCTCGCG TERM 2570 2208834 - 2208858 + G 77 -13.5 -3.26745 | overlap 2208832 GCACCCGCTTCACCC CGTTTGGCCGG GTA CCGGCCCAGCG TCTCTTTACCGTCTC lolC 2208290 - 2209525 + | lipoprotein-releasing system transmembrane protein LolC lolD 2209518 - 2210300 + | lipoprotein releasing system, ATP-binding protein lolE 2210300 - 2211541 + | lipoprotein releasing system, transmembrane protein LolE TERM 2571 2211570 - 2211606 + T 100 -24.6 -3.65425 | gap 1, opp_overlap 2211570 2211571, overlap 2211570 GTTTGCTGATAAAAA C-GAAGGGCCCGCCGGT GCAA ACCGGCGGGCCCTTCCG TTTGGGGTATCTGGC TERM 2572 2211605 - 2211570 - T 100 -24.8 -4.82901 | opp_overlap 2211570 2211570, overlap 2211571 GTTTGCTGATAAAAA CGAAGGGCCCGCCGGT GCAA ACCGGCGGGCCCTTCC GTTTGGGGTATCTGG TERM 2573 2211570 - 2211605 + T 100 -24.8 -2.78934 | opp_overlap 2211570 2211571, overlap 2211570 GTTTGCTGATAAAAA CGAAGGGCCCGCCGGT GCAA ACCGGCGGGCCCTTCC GTTTGGGGTATCTGG TERM 2574 2211604 - 2211571 - T 100 -28.3 -3.49419 | opp_overlap 2211570 2211570, overlap 2211570 TTTGCTGATAAAAAC GAAGGGCCCGCCGGT GCAA ACCGGCGGGCCCTTC CGTTTGGGGTATCTG AHA_2008 2212216 - 2211626 - | 5'-nucleotidase YfbR TERM 2575 2211920 - 2211898 - G 75 -13.4 -3.01712 | opp_overlap 2211901 GCTCCGGCGGCAACA TGCCGAGCAG GCG CTGCTCGGCG GCCAGCTCAATCTTC TERM 2576 2212245 - 2212264 + r 100 -13.6 -5.03314 | opp_overlap 2212245 GATGGCAATGAAAAA GGGCAGAC CCTA GTCTGCCC TTTTTTGCGGCTGGC TERM 2577 2212264 - 2212245 - R 100 -13.6 -4.87291 | opp_overlap 2212245 GATGGCAATGAAAAA GGGCAGAC CCTA GTCTGCCC TTTTTTGCGGCTGGC AHA_2009 2212724 - 2212290 - | hypothetical protein TERM 2578 2213108 - 2213086 - H 77 -11.2 -3.50335 | overlap 2213080 2213088 CTTTATAAACAGGAA GACTCCGGGC TTT GCCCAGAGGC AATAAAGGGTCAGCA TERM 2579 2213106 - 2213088 - H 80 -12.4 -3.32024 | overlap 2213080 2213086 TTATAAACAGGAAGA CTCCGGGC TTT GCCCAGAG GCAATAAAGGGTCAG TERM 2580 2213281 - 2213265 - g 70 -7.9 -4.07687 | opp_overlap 2213266, overlap 2213251 2213266 ACGGCCTGGCCAAAA CCCGTCG CAT CGACGGT TTCCGTCCTGGCAAG TERM 2581 2213266 - 2213280 + G 76 -11.4 -3.68351 | opp_overlap 2213265 2213251 2213266 CGGCCTGGCCAAAAC CCGTCG CAT CGACGG TTTCCGTCCTGGCAA TERM 2582 2213434 - 2213402 - g 75 -4 -4.6951 | gap 1, overlap 2213404 ATCATCGAAAACAAA CTGAGCC-CGGCCGG TGCC CCGACCATGGATCCG AAAGAGATCCAGGAA tig 2213153 - 2214463 + | trigger factor TERM 2583 2214495 - 2214531 + F 86 -10.2 -4.08216 | opp_overlap 2214500, overlap 2214500 GTCAAGACTGTTAAG TATAATGGCTCGTGTG ATCTC CACTCGGGCCATTTTA TTTTAGGGACAATGC TERM 2584 2214500 - 2214526 + F 100 -10.1 -5.07652 | opp_overlap 2214500, overlap 2214495 GACTGTTAAGTATAA TGGCTCGTGTG ATCTC CACTCGGGCCA TTTTATTTTAGGGAC clpP 2214571 - 2215173 + | ATP-dependent Clp protease, proteolytic subunit ClpP clpX 2215320 - 2216594 + | ATP-dependent protease ATP-binding subunit TERM 2585 2216612 - 2216642 + F 90 -8.3 -4.70879 | opp_overlap 2216615 2216620, overlap 2216613 2216615 2216620 GTCTGATTTTTAATC AAATGAAAGGGGC TTTTT GCCCCTTTCATGC TTTTTGCGGTTTCGG TERM 2586 2216613 - 2216641 + F 80 -11.8 -3.41804 | opp_overlap 2216615 2216620, overlap 2216612 2216615 2216620 TCTGATTTTTAATCA AATGAAAGGGGC TTTTT GCCCCTTTCATG CTTTTTGCGGTTTCG TERM 2587 2216615 - 2216639 + F 95 -14.4 -3.26839 | opp_overlap 2216615 2216620, overlap 2216613 2216612 2216620 TGATTTTTAATCAAA TGAAAGGGGC TTTTT GCCCCTTTCA TGCTTTTTGCGGTTT TERM 2588 2216639 - 2216615 - f 100 -14.4 -3.91084 | opp_overlap 2216615 2216613 2216612 2216620, overlap 2216620 TGATTTTTAATCAAA TGAAAGGGGC TTTTT GCCCCTTTCA TGCTTTTTGCGGTTT TERM 2589 2216620 - 2216634 + F 74 -8.5 -3.96337 | opp_overlap 2216615 2216620, overlap 2216615 2216613 2216612 TTTAATCAAATGAAA GGGGC TTTTT GCCCC TTTCATGCTTTTTGC TERM 2590 2216634 - 2216620 - f 77 -8.5 -4.14598 | opp_overlap 2216620 2216615 2216613 2216612, overlap 2216615 TTTAATCAAATGAAA GGGGC TTTTT GCCCC TTTCATGCTTTTTGC lon 2216736 - 2219090 + | ATP-dependent protease La AHA_2014 2219331 - 2219603 + | DNA-binding protein HU-beta TERM 2591 2219709 - 2219688 - f 74 -11.5 -3.19091 | opp_overlap 2219688 ATACTGATTGACCAA GGCGCATCG CAAT CGGTGCGCC TTTTCATTATTTACG TERM 2592 2219688 - 2219709 + F 100 -13.7 -4.62203 | opp_overlap 2219688 ATACTGATTGACCAA GGCGCATCG CAAT CGGTGCGCC TTTTCATTATTTACG ppiD 2219758 - 2221668 + | peptidylprolyl cis-trans isomerase D TERM 2593 2221715 - 2221697 - T 95 -13.1 -4.15453 | opp_overlap 2221697 CAATCCATGTGAAAA CGGCCCC TTGAT GGGGCCG TTTCTTTATCTGCGA TERM 2594 2221697 - 2221715 + T 100 -13.1 -4.62441 | opp_overlap 2221697 CAATCCATGTGAAAA CGGCCCC TTGAT GGGGCCG TTTCTTTATCTGCGA TERM 2595 2221844 - 2221861 + T 100 -12.7 -4.4078 | opp_overlap 2221844 GCAGGCATAAAAAAA CCGGCAC TGAG GTGCCGG TTTTCATTGACGGGA TERM 2596 2221861 - 2221844 - T 100 -12.7 -5.64274 | opp_overlap 2221844 GCAGGCATAAAAAAA CCGGCAC TGAG GTGCCGG TTTTCATTGACGGGA AHA_2016 2223486 - 2221894 - | ABC transporter ATP-binding protein TERM 2597 2224442 - 2224457 + r 70 -5.4 -4.38712 | gap 1, opp_overlap 2224425 2224422 TCATTCTTTGAAAGG CGCTGCG ATA CG-AGCG TTTTGTCGAAATGCC TERM 2598 2224499 - 2224525 + r 77 -11.6 -3.56325 | opp_overlap 2224500, overlap 2224500 2224502 CCGCACTCTCAATGA AGGCGCTTGAAG CCT CTTCAAGCGTCA TTCTGGTTGTCGCCC TERM 2599 2224500 - 2224524 + r 83 -15.1 -2.73474 | opp_overlap 2224500, overlap 2224499 2224502 CGCACTCTCAATGAA GGCGCTTGAAG CCT CTTCAAGCGTC ATTCTGGTTGTCGCC TERM 2600 2224524 - 2224500 - R 84 -12.9 -3.34895 | opp_overlap 2224499 2224500 2224502 CGCACTCTCAATGAA GGCGCTTGAAG CCT CTTCAAGCGTC ATTCTGGTTGTCGCC TERM 2601 2224502 - 2224522 + r 86 -14.1 -2.90904 | opp_overlap 2224500, overlap 2224500 2224499 CACTCTCAATGAAGG CGCTTGAAG CCT CTTCAAGCG TCATTCTGGTTGTCG TERM 2602 2224709 - 2224723 + r 71 -4.2 -4.65916 | GGTGTCCCTTATAGC TGAAGC AAA GCCTCA TTTTGTTGCCATGCA AHA_2018 2225355 - 2224945 - | hypothetical protein TERM 2603 2225423 - 2225406 - R 80 -9.8 -3.9392 | GTTGAGTTGAAAGAA GGGCCG TGATTT CGGCCC CCAGCTCAGGGGTCG AHA_2019 2225855 - 2225454 - | hypothetical protein AHA_2020 2227989 - 2226502 - | hypothetical protein AHA_2021 2228362 - 2228171 - | hypothetical protein AHA_2022 2229428 - 2229144 - | DNA-binding protein TERM 2604 2229479 - 2229460 - R 100 -12.1 -5.45802 | opp_overlap 2229460 TGGTTAAAACAAAAA CCCCGGC ACGAGG GCCGGGG TTGCTAGGAGAATCT TERM 2605 2229460 - 2229479 + r 76 -12.1 -3.14683 | opp_overlap 2229460 TGGTTAAAACAAAAA CCCCGGC ACGAGG GCCGGGG TTGCTAGGAGAATCT TERM 2606 2230030 - 2230001 - R 71 -9.5 -3.46914 | gap 1, opp_overlap 2230025 2230029, overlap 2229999 ATGATGCATCAAATA CCTGCATAATATTG CTC CAAC-TTATGCAGG TCTGCGATCTTTAAG AHA_2023 2231145 - 2229994 - | hypothetical protein TERM 2607 2231254 - 2231242 - R 76 -3.4 -5.00884 | ATCCCCCCTAAAAAA TCAG TTGAT CTGA AGATGCGTTCCAGCC TERM 2608 2231683 - 2231693 + r 74 -6.8 -4.36206 | CGACGGTGGAGGCGT GCTC TGC GAGC TTTGTTGTCGCTTAT TERM 2609 2231903 - 2231927 + r 81 -13.6 -2.93252 | overlap 2231907 GGTACCCCAGTCCTT CGAAGCCCGC CTTGT GCGGGCTTTG TCGTTCTTACGCGCT TERM 2610 2231907 - 2231923 + r 86 -10.8 -4.14257 | overlap 2231903 CCCCAGTCCTTCGAA GCCCGC CTTGT GCGGGC TTTGTCGTTCTTACG AHA_2024 2232257 - 2232078 - | hypothetical protein TERM 2611 2232443 - 2232458 + r 90 -11.8 -3.92869 | opp_overlap 2232443 GTAGATAAGAAAAAA CCCGCC AACT GGCGGG TTTATGCATGAGTAG TERM 2612 2232458 - 2232443 - R 100 -11.8 -5.60689 | opp_overlap 2232443 GTAGATAAGAAAAAA CCCGCC AACT GGCGGG TTTATGCATGAGTAG AHA_2025 2233090 - 2232485 - | putative DNA-binding protein TERM 2613 2232997 - 2233014 + g 77 -4.1 -4.83169 | overlap 2232998 GAATGGCGCTTAGTG TTGGCTT TGAG AGGCCAG TTTTTCTAGCCAAGT AHA_2026 2233478 - 2233867 + | hypothetical protein AHA_2027 2234529 - 2235266 + | hypothetical protein AHA_2028 2235244 - 2235726 + | hypothetical protein AHA_2029 2236766 - 2236299 - | hypothetical protein TERM 2614 2237003 - 2236982 - R 77 -11.6 -3.52316 | TTGATAGAGAAGGAA GCACCGGT ATTACA ACCGGTGC ATATAAAGTTTAGGT AHA_2030 2237826 - 2237161 - | hypothetical protein TERM 2615 2237944 - 2237956 + r 77 -7.7 -4.22927 | CAATGTATTATGGGT GATGG CTT CCATC TTTATATATTACTCG AHA_2031 2238360 - 2237965 - | hypothetical protein AHA_2032 2238820 - 2239605 + | hypothetical protein TERM 2616 2239689 - 2239703 + G 72 -4.2 -4.64766 | GGGGTGGTTCTATGT GCCC CTAAAGC GGGC TTTTTGGACTATCGC AHA_2033 2239584 - 2240438 + | hypothetical protein TERM 2617 2240463 - 2240483 + T 76 -9.6 -3.90358 | opp_overlap 2240454 2240464, overlap 2240458 2240464 CTAACAGTCGTAAAA ACGCCGGC TCAGT GCCGGCGC TTTCATATATGCTGT TERM 2618 2240482 - 2240464 - T 100 -13.1 -4.62302 | opp_overlap 2240463 2240458 2240464, overlap 2240454 TAACAGTCGTAAAAA CGCCGGC TCAGT GCCGGCG CTTTCATATATGCTG TERM 2619 2240464 - 2240482 + T 79 -13.1 -2.93492 | opp_overlap 2240454 2240464, overlap 2240463 2240458 TAACAGTCGTAAAAA CGCCGGC TCAGT GCCGGCG CTTTCATATATGCTG AHA_2034 2241805 - 2241671 - | hypothetical protein TERM 2620 2242129 - 2242183 + H 100 -18.8 -2.66316 | opp_overlap 2242136, overlap 2242136 2242166 TGGGCGGTTTAAGGT TGCGAAAGGTCCGCGCCCTAAA CTCGTACCTCC TTTAGGGCGCGAACCTTTCGCC TCCTGTAGTAAAGAG TERM 2621 2242136 - 2242176 + H 86 -12.7 -3.63068 | opp_overlap 2242136, overlap 2242129 2242166 TTTAAGGTTGCGAAA GGTCCGCGCCCTAAA CTCGTACCTCC TTTAGGGCGCGAACC TTTCGCCTCCTGTAG TERM 2622 2242176 - 2242136 - H 95 -14.9 -3.55622 | opp_overlap 2242136 2242129 2242166 TTTAAGGTTGCGAAA GGTCCGCGCCCTAAA CTCGTACCTCC TTTAGGGCGCGAACC TTTCGCCTCCTGTAG TERM 2623 2242205 - 2242232 + H 100 -10 -5.45802 | gap 1, opp_overlap 2242205 AGTAAAGAGTCGAAA GCCTAAG-ACTAG TTC CTAGTTCTTGGGC TTTTTGTTTTGAGGG AHA_2035 2242283 - 2243191 + | putative RNA-dependent DNA polymerase AHA_2036 2243181 - 2244851 + | RecF/RecN/SMC family protein AHA_2037 2244835 - 2245503 + | hypothetical protein TERM 2624 2245497 - 2245508 + F 79 -3 -5.26316 | TGCTCAGGTTATCTT CAAT TGAC ATTG TTTTTTGTCAAATCC AHA_2038 2245549 - 2246283 + | Rha family phage regulatory protein AHA_2039 2246290 - 2246730 + | NinB protein AHA_2040 2246727 - 2247044 + | hypothetical protein AHA_2041 2247041 - 2247463 + | hypothetical protein AHA_2042 2247460 - 2248161 + | hypothetical protein AHA_2043 2248891 - 2248208 - | hypothetical protein umuC 2250271 - 2248997 - | protein UmuC umuD 2250697 - 2250275 - | umuD protein TERM 2625 2251185 - 2251197 + G 72 -7.7 -4.1891 | opp_overlap 2251178 GCTGAACACGGTAAT GCTGA TGC TCAGC TTTATCTTGGGCAAA AHA_2046 2250885 - 2251949 + | hypothetical protein AHA_2047 2252032 - 2252442 + | DNA-binding protein Hns TERM 2626 2252462 - 2252481 + F 100 -12.2 -5.03715 | opp_overlap 2252462 CTAGGAAGTTGAAAA GCCAAGGA GTGC TCCTTGGC TTTTTTCGGGGTAAT TERM 2627 2252481 - 2252462 - f 91 -12.2 -4.20696 | opp_overlap 2252462 CTAGGAAGTTGAAAA GCCAAGGA GTGC TCCTTGGC TTTTTTCGGGGTAAT AHA_2048 2252526 - 2252999 + | hypothetical protein AHA_2049 2253020 - 2253631 + | hypothetical protein TERM 2628 2253694 - 2253667 - f 79 -13.4 -2.7185 | opp_overlap 2253668 AGCATCTCCCAATGA TGGCCAGAGTCC CCCG GGACCCTGGCCT TTTCTATTTCTGGCC TERM 2629 2253668 - 2253693 + F 100 -14.7 -4.84918 | opp_overlap 2253667 GCATCTCCCAATGAT GGCCAGAGTCC CCCG GGACCCTGGCC TTTTCTATTTCTGGC TERM 2630 2253707 - 2253723 + F 86 -10.8 -4.17701 | CCTTTTCTATTTCTG GCCCGC CTCGT GCGGGC TTTGTCGTTTCTGGA TERM 2631 2254255 - 2254266 + GF 74 -7.2 -4.19238 | opp_overlap 2254254 CTCTCCCACAACATC GGCC CTGG GGCC TTTTGCCGTTCCACC AHA_2050 2253952 - 2254443 + | phage lysozyme AHA_2051 2254838 - 2254488 - | hypothetical protein AHA_2052 2254269 - 2254940 + | hypothetical protein TERM 2632 2255204 - 2255183 - g 88 -14.5 -3.78953 | overlap 2255154 2255155 2255197 2255198 AGTCTGAGGAGCAAA CTGCGCAGT CCAA ACTGCGCAG TGCGCAAAGAAATGC TERM 2633 2255236 - 2255217 - g 76 -6.4 -4.42062 | overlap 2255231 CAGTGCGCAAAGAAA TGCGCAGT CAGA AGTGCGCA ATCGGCAAAGTGCGC AHA_2053 2255023 - 2255919 + | putative small subunit bacteriophage terminase AHA_2054 2255959 - 2256705 + | hypothetical protein TERM 2634 2256712 - 2256725 + F 100 -9.5 -5.4833 | TTTAGCTAATTCTAA CCCGC TTCG GCGGG TTTTTTGTTACCTGA AHA_2055 2256773 - 2257837 + | large subunit terminase TERM 2635 2258294 - 2258315 + T 100 -14.5 -6.10295 | CCGTTTTTTGTTTTG CCAGTGCCA TTAA TGGCACTGG TTTTTTTTATGTTGA TERM 2636 2259281 - 2259297 + T 81 -3.6 -5.24129 | opp_overlap 2259270 AAAAGCCCACCATAA GCCTGC CATGT GTGGGC TTTTTTATGGCAGCA TERM 2637 2260314 - 2260297 - T 100 -14.1 -5.21709 | CTCGACATGAAAAAA GCCGGCC CTGG GGCCGGC TTGCAACCGTCAATC actP 2261991 - 2260336 - | acetate permease AHA_2057 2262299 - 2261988 - | hypothetical protein AHA_2058 2263035 - 2262409 - | DNA polymerase III subunit epsilon AHA_2059 2264825 - 2263038 - | cyclic nucleotide binding protein/CBS domain-containing proteins AHA_2060 2265002 - 2265808 + | enoyl-CoA hydratase/isomerase family protein AHA_2061 2266221 - 2266472 + | phage transcriptional activator, Ogr/Delta, putative TERM 2638 2266460 - 2266477 + T 76 -9.8 -3.8186 | opp_overlap 2266458 AGTATTGAAAGGATT GGGGGC GCAGTA GCCCCC TTGTTCGTTACACTC AHA_2062 2267709 - 2266720 - | hypothetical protein AHA_2063 2270161 - 2267696 - | hypothetical protein AHA_2064 2270723 - 2270253 - | hypothetical protein AHA_2065 2271560 - 2270973 - | hypothetical protein AHA_2066 2271940 - 2271560 - | A protein TERM 2639 2272006 - 2271977 - R 95 -12.3 -4.50159 | opp_overlap 2271983, overlap 2271983 TTGAATTTAAATAAA TAAAAATGGCAGC CTCG GCTGCCATTTTTG TTGGAGAGTAGTGCG TERM 2640 2272000 - 2271983 - R 100 -11.3 -5.5454 | opp_overlap 2271983, overlap 2271977 TTAAATAAATAAAAA TGGCAGC CTCG GCTGCCA TTTTTGTTGGAGAGT TERM 2641 2271983 - 2272000 + r 100 -11.3 -5.06816 | opp_overlap 2271983 2271977 TTAAATAAATAAAAA TGGCAGC CTCG GCTGCCA TTTTTGTTGGAGAGT AHA_2067 2273524 - 2272025 - | sodium:alanine symporter family protein AHA_2068 2273674 - 2274276 + | protein PhnO AHA_2069 2274295 - 2275104 + | hypothetical protein TERM 2642 2275156 - 2275139 - T 100 -12.7 -5.06414 | opp_overlap 2275139 CGCGCCCAACAAAAA GGCACCC TGCG GGGTGCC TTTTTCGTGACAGCT TERM 2643 2275139 - 2275156 + T 100 -12.7 -4.7254 | opp_overlap 2275139 CGCGCCCAACAAAAA GGCACCC TGCG GGGTGCC TTTTTCGTGACAGCT AHA_2070 2275783 - 2275187 - | GPR1/FUN34/yaaH family membrane protein TERM 2644 2276465 - 2276410 - R 90 -17 -2.67515 | gap 1, opp_overlap 2276421, overlap 2276432 GCCAGGAGGATACGA GCGTGCCACGTGCAGGATGAGAGGGAT GGC ATCCCCCTCATCCTGCTGATGTCA-GC GGCTCAATCGTCCAG TERM 2645 2276421 - 2276455 + r 100 -21.6 -2.62396 | opp_overlap 2276410 2276432 ACGAGCGTGCCACGT GCAGGATGAGAGGGAT GGC ATCCCCCTCATCCTGC TGATGTCAGCGGCTC AHA_2071 2279369 - 2276469 - | hypothetical protein AHA_2072 2280179 - 2279418 - | periplasmic binding protein AHA_2073 2280639 - 2280217 - | MerR family transcriptional regulator AHA_2074 2281607 - 2280651 - | hydroxymethylglutaryl-CoA lyase AHA_2075 2283568 - 2281604 - | methylcrotonoyl-CoA carboxylase alpha chain TERM 2646 2283178 - 2283128 - G 72 -4.5 -4.58395 | gap 1, overlap 2283130 2283156 2283157 CTGATCGCGCAAAAA GTCGGGGTGCTGAT-CCGCACCGT GATA ACCGGGCAGCACCGGCACGCCGGC TGCCTGCATCAGCGC AHA_2076 2284517 - 2283678 - | enoyl-CoA hydratase/isomerase family protein TERM 2647 2284318 - 2284300 - G 72 -4.4 -4.57569 | GCACCGGCGCAAAAA TGCTTGCC TTC GGCCCGCA GCAGCAAGGCGTGGG AHA_2077 2286128 - 2284527 - | methylcrotonoyl-CoA carboxylase beta chain AHA_2078 2287273 - 2286125 - | isovaleryl-CoA dehydrogenase 2 TERM 2648 2286329 - 2286316 - G 74 -2.3 -4.86731 | opp_overlap 2286316 CGGCGGCAAACAAAA TGGCG GCGG CGCAA TCCTTGCGGCTGGTG TERM 2649 2288916 - 2288943 + G 72 -4.1 -4.56597 | gap 1, overlap 2288917 CCTTCTACGGGGATC TGCA-CGCCTAC GGCAA GCAGGCGGTGCG TTTTTACACCGAGAC mmsA-2 2287520 - 2289031 + | methylmalonate-semialdehyde dehydrogenase TERM 2650 2290004 - 2289964 - g 78 -14.6 -3.06501 | gap 1, opp_overlap 2289947 GACATGGCCACCGAA CTGGCGGCCGCTCGGTTGC TGGT GCGTCAG-GCGGCCGCCAG GCTCGATGCCGGGGC AHA_2080 2289031 - 2290254 + | acyl-CoA dehydrogenase TERM 2651 2290285 - 2290320 + F 82 -11.1 -3.85698 | overlap 2290286 GTGCTCGGCAGCTCA CCCTGACGACGGGGC TGGCGT GGCTCGTCGTCAGGC TTTGTGAGCCAGCCG TERM 2652 2290286 - 2290319 + F 86 -14.6 -2.91276 | overlap 2290285 TGCTCGGCAGCTCAC CCTGACGACGGGGC TGGCGT GGCTCGTCGTCAGG CTTTGTGAGCCAGCC TERM 2653 2290355 - 2290373 + F 77 -3.8 -5.00616 | opp_overlap 2290354 TCGGCTCCATTCAAC CCTGTC ATCATGG GGCAGG TTTTTTGACAAGGAC AHA_2081 2290395 - 2291207 + | enoyl-CoA hydratase TERM 2654 2291709 - 2291743 + G 78 -6.4 -4.57073 | gap 1 CCATGCCGGAGGTGA CCATC-GGCCTCTAC CCCGAT GTGGGGGCCAGCTGG TTTTTGAGCCGCATG AHA_2082 2291267 - 2292370 + | enoyl-CoA hydratase/isomerase family protein mmsB 2292398 - 2293318 + | 3-hydroxyisobutyrate dehydrogenase fabG 2293390 - 2294151 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 2655 2294173 - 2294198 + F 100 -15.5 -5.06816 | gap 1 GCGCTCTGTTGCAGA TGCCCCTG-GCC CTC GGCGCAGGGGCA TTTTTATTGAAACGT AHA_2085 2294541 - 2295977 + | arginine/ornithine antiporter TERM 2656 2296012 - 2295991 - f 100 -14.5 -4.31835 | opp_overlap 2295991 AACCGGCACAATAAA GAGATGGCC CAAG GGCCATCTC TTTTTTTATGTGCAG TERM 2657 2295991 - 2296012 + F 100 -14.5 -5.71712 | opp_overlap 2295991 AACCGGCACAATAAA GAGATGGCC CAAG GGCCATCTC TTTTTTTATGTGCAG AHA_2086 2296068 - 2296856 + | hypothetical protein AHA_2087 2298637 - 2297699 - | transcriptional regulator, LysR family protein TERM 2658 2297788 - 2297804 + g 74 -2.3 -4.94902 | GATTGTCTCTGCGTC GATAAAT GAG ATATATC TTTTTATAATGATTC TERM 2659 2299615 - 2299643 + GH 85 -5.9 -5.06414 | CAGAGCGAGGTAGTG CTCTCCACTGGCT GTT GGGCAGTGCAGGG TTTTTATTACGCCAG AHA_2088 2299168 - 2299698 + | EAL domain-containing protein TERM 2660 2299943 - 2299932 - gT 81 -2.2 -5.14563 | gap 1, overlap 2299933 GCGCGCAGTAAAAAA GTGGG TTG CCC-C GAGCTGACAAAGATG TERM 2661 2300122 - 2300138 + GT 91 -3 -5.4251 | gap 1, overlap 2300125 TTCATCTTGATGTCA TACTCGG TCAT CCG-GTA TTTTTTCTCTCTCGA TERM 2662 2300637 - 2300651 + GT 76 -10 -3.85698 | CCTGTATACGGGCTG CTCAGC CCT GCTGAG TTTGTAACCCAGGCA TERM 2663 2300740 - 2300728 - gT 93 -7.7 -5.0133 | overlap 2300731 TAGTTGCCGAAAAAA TCAGC GTG GCTGA CGTCACACTGCCGCC AHA_2089 2299629 - 2301302 + | cyclic diguanylate phosphodiesterase domain-containing protein AHA_2090 2302182 - 2301307 - | transcriptional regulator AHA_2091 2302339 - 2303772 + | beta-glucosidase TERM 2664 2303826 - 2303793 - T 71 -12.3 -2.53715 | opp_overlap 2303794, overlap 2303792 CTGAGCAGTAGTAAT TCGACAGGCTCCGCC CACC GGCGGGGCCTGTTGT TTTTGGTGTGAAGGA TERM 2665 2303794 - 2303825 + T 100 -20.2 -4.8048 | opp_overlap 2303793 2303792 TGAGCAGTAGTAATT CGACAGGCTCCGCC CACC GGCGGGGCCTGTTG TTTTTGGTGTGAAGG AHA_2092 2305706 - 2303883 - | GGDEF family protein TERM 2666 2304218 - 2304243 + g 76 -12.7 -3.39732 | gap 1, opp_overlap 2304218 2304217 2304220, overlap 2304216 AGCCGGTGCCGAAAT CATCCA-GTGCG ATG CGCACGTGGATG TGTTTGAGCTCCTTG TERM 2667 2304989 - 2304963 - G 75 -11.7 -3.67517 | gap 1, opp_overlap 2304972, overlap 2304957 GATGAAGAGGGCAAA TTCATCG-CCGC CCAT GCGGGCGATGAA GGCCTGGTCATGGGC AHA_2093 2306293 - 2305808 - | oxidoreductase molybdopterin binding subunit TERM 2668 2306997 - 2307029 + G 74 -4.7 -4.56153 | TGGTACAAACCCCTG GATTGGCGGCGGGCG TGA TGCGCCATGCCAATC TTATTTTTCTGGTGG TERM 2669 2307736 - 2307760 + G 95 -11.4 -4.57073 | ACCCTACCGGGAGGG GTTGAGCGCC GGGCA GGCGCTCGGC TTTTTGCAGCAACTG AHA_2094 2306540 - 2307886 + | HD domain-containing protein AHA_2095 2308687 - 2307932 - | reductase TERM 2670 2308611 - 2308636 + g 71 -11.1 -3.53012 | ATGAGATCGATGCTG CGGGCGGCG AGGGCCAG CGCCGCCTG TTTGCCAAGGCCGCG AHA_2096 2308814 - 2309767 + | LysR family transcriptional regulator AHA_2097 2309932 - 2310777 + | endonuclease IV TERM 2671 2310860 - 2310878 + G 90 -8.1 -4.84761 | gap 1, overlap 2310858 GGGGGATTGCCGGGG CGG-GGGC CATT GCCCGCCG TTTTTGTCAGGATGT TERM 2672 2311134 - 2311120 - g 72 -4.2 -4.56597 | GTGCTGGTGGAAAAA CCGG CGGTGAC CCGG GTGGCGGACTGGGAT TERM 2673 2311441 - 2311467 + G 71 -5.8 -4.26881 | gap 1, overlap 2311437 2311446 ACGCTGTCTCGTCAG GCGGGCGAGGT GGACGA AGC-CGCCCGC TTTGATTTTGTCGGC AHA_2098 2310811 - 2311800 + | oxidoreductase, NAD-binding TERM 2674 2311822 - 2311845 + T 100 -16.8 -3.76169 | opp_overlap 2311822 AGGCTGAATGACAAA GAGGGAGAGC CTGG GCTCTCCCTC TTCTATTGCTGTTGA TERM 2675 2311845 - 2311822 - T 100 -16.8 -4.05714 | opp_overlap 2311822 AGGCTGAATGACAAA GAGGGAGAGC CTGG GCTCTCCCTC TTCTATTGCTGTTGA AHA_2099 2312823 - 2311915 - | LysR family transcriptional regulator TERM 2676 2312165 - 2312201 + g 75 -14.4 -2.82635 | TCCAGGGTATTGAGT TCGAGCCCGGCCTGCC AGCGG GGCAGCTCGGGCTGGA TCTGCTGCTCGAACT TERM 2677 2313529 - 2313482 - g 71 -14 -2.50816 | opp_overlap 2313499 2313513 2313514, overlap 2313481 TCTTCAGCCATGAAG TGCCGGATGCCGCCAAGCCGAC CATC GCCATCCTGGCGGCCCCCGCCA GCTTGTCACTGGCCG TERM 2678 2313514 - 2313530 + G 71 -13.7 -2.61264 | opp_overlap 2313482 2313481, overlap 2313513 2313499 CCGACCATCGCCATC CTGGCGG CCC CCGCCAG CTTGTCACTGGCCGG AHA_2100 2312923 - 2313906 + | tellurite resistance protein TERM 2679 2314013 - 2313990 - f 100 -16.8 -3.30474 | opp_overlap 2313990, overlap 2313983 CCGGATAATGACCAA GCGCTTCACC CTCG GGTGAAGCGC TTTTTGTACCGGTTC TERM 2680 2313990 - 2314013 + F 100 -16.8 -4.8543 | opp_overlap 2313990 2313983 CCGGATAATGACCAA GCGCTTCACC CTCG GGTGAAGCGC TTTTTGTACCGGTTC msbB 2314174 - 2315163 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2681 2315164 - 2315174 + F 77 -8.2 -4.11404 | overlap 2315144 CAGCCGCTGCCCTGA GGCG GCA CGCC TTTATGTCATATGGC TERM 2682 2315186 - 2315201 + F 100 -10.4 -5.07486 | CGCCTTTATGTCATA TGGCCC TGCG GGGCCA TTTTTATTGGCGATG AHA_2102 2315332 - 2316330 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase AHA_2103 2316472 - 2317332 + | RIO1 protein TERM 2683 2317379 - 2317363 - T 80 -9.4 -4.20516 | opp_overlap 2317363 TGGTCAGTGAACAAA GAGCGC TTGTG GCGCTC TTTTTTATTGTCCGC TERM 2684 2317363 - 2317379 + T 100 -10.1 -5.55769 | opp_overlap 2317363 TGGTCAGTGAACAAA GAGCGCT TGT GGCGCTC TTTTTTATTGTCCGC AHA_2104 2317941 - 2317384 - | acetyltransferase AHA_2105 2319290 - 2317917 - | GGDEF domain-containing protein AHA_2106 2320089 - 2319364 - | YbaK/prolyl-tRNA synthetase domain-containing protein TERM 2685 2319920 - 2319909 - GH 74 -7.2 -4.15222 | overlap 2319895 2319910 AGCGCGGCGAATAAA GCCG CCAC CGGC AGTCGCTGCCAGTCT TERM 2686 2320100 - 2320112 + Gr 71 -6.2 -4.30987 | opp_overlap 2320098 CCCATCCACTACACC GCCG CGAGA CGGC TTTATTCTGACCCGT TERM 2687 2320564 - 2320550 - gR 76 -12.8 -2.73364 | CTGGGAGGTGAACGA GGCGCG CTG CGCGCC GCAGGCGGTGACGCC TERM 2688 2320612 - 2320629 + Gr 74 -5.5 -4.42386 | CGCTGGACGTGGAGT GCGCC ATGGACGG GGCGC TTTTCTCGGTGGGGC TERM 2689 2322262 - 2322236 - gR 71 -8.6 -3.85864 | GGAGTATCAGAAGAA CGTGCCACCC CATGTGC GGGCGGCGCG CCTGGCGGACGAGGA polB 2320065 - 2322494 + | DNA polymerase II TERM 2690 2322618 - 2322600 - TR 100 -16 -4.81249 | opp_overlap 2322600 GGGGAAATGCAAAAA GCCCGCTC GAG GAGCGGGC TTTGCTAATCTGGTG TERM 2691 2322600 - 2322618 + Tr 100 -16 -3.82665 | opp_overlap 2322600 GGGGAAATGCAAAAA GCCCGCTC GAG GAGCGGGC TTTGCTAATCTGGTG AHA_2114 2324740 - 2323361 - | multidrug resistance protein MdtK TERM 2692 2324827 - 2324794 - R 100 -16.9 -3.04144 | gap 1, overlap 2324779 CGGGTAGCGGGAAGA GC-CTTTGCACTCCCG AAA CGGGAATGCAAAGTGC GGGGGGGTCATTCTA AHA_2115 2325093 - 2324887 - | hypothetical protein TERM 2693 2325183 - 2325199 + H 90 -5.7 -5.14563 | TTGTCTGGGGCCCGG GGCGAGG TTA CCCTGCC TTTTTTCGTAGCAGG ribE-1 2325224 - 2325841 + | riboflavin synthase subunit alpha TERM 2694 2325899 - 2325879 - T 100 -16.9 -4.52857 | opp_overlap 2325879 ATTTGCCATAGAAAA GGGCCTGCA TCA TGCAGGCCC TTGGCTATCTGGTGG TERM 2695 2325879 - 2325899 + T 100 -16.9 -3.16971 | opp_overlap 2325879 ATTTGCCATAGAAAA GGGCCTGCA TCA TGCAGGCCC TTGGCTATCTGGTGG AHA_2117 2326134 - 2325931 - | hypothetical protein AHA_2118 2326932 - 2326273 - | 2-deoxyglucose-6-phosphatase TERM 2696 2327007 - 2326990 - R 91 -11.3 -4.27316 | CGCCTCAATGCAAAA GGGGCAT TGCC ATGCCCC TTGCGCCGGATCACG TERM 2697 2327070 - 2327055 - R 84 -3.2 -5.36441 | GTGCGAGACAAAAAA GTGGTC AGAA GAGCAC GTCCACCCTGGCGGC purT 2328237 - 2327059 - | phosphoribosylglycinamide formyltransferase 2 TERM 2698 2328324 - 2328304 - R 100 -13.3 -5.41143 | TAGCGGGCAAAAAAA GAGGCACGC ATG GCGTACCTC AGGAAACGGATTTGT AHA_2120 2329273 - 2328323 - | drug/metabolite exporter family protein TERM 2699 2328429 - 2328407 - G 77 -13.4 -3.35679 | GGCCCCGAGCCACAA TCGGCCGGGC GGC GCCCAGCCAA ACACCAGCCAGCCGG AHA_2121 2329331 - 2330026 + | acyl carrier protein phosphodiesterase TERM 2700 2330088 - 2330057 - T 90 -13 -3.91144 | opp_overlap 2330058 2330059, overlap 2330058 2330061 GCCAGACGTCAGAAA GCGACAACGCAGCC CTCG GGCTGCGTTGTCTG TTTTGGGGCCTTGTG TERM 2701 2330058 - 2330088 + T 100 -16.3 -4.12198 | gap 1, opp_overlap 2330057 2330058 2330061, overlap 2330059 CCAGACGTCAGAAAG C-GACAACGCAGCC CTCG GGCTGCGTTGTCTG TTTTGGGGCCTTGTG TERM 2702 2330087 - 2330058 - T 93 -16.5 -2.94365 | opp_overlap 2330058 2330059, overlap 2330057 2330061 CCAGACGTCAGAAAG CGACAACGCAGCC CTCG GGCTGCGTTGTCT GTTTTGGGGCCTTGT TERM 2703 2330059 - 2330086 + T 100 -20 -3.6543 | opp_overlap 2330058 2330057 2330061, overlap 2330058 CAGACGTCAGAAAGC GACAACGCAGCC CTCG GGCTGCGTTGTC TGTTTTGGGGCCTTG TERM 2704 2330084 - 2330061 - T 90 -16.8 -2.7083 | opp_overlap 2330059 2330058, overlap 2330058 2330057 GACGTCAGAAAGCGA CAACGCAGCC CTCG GGCTGCGTTG TCTGTTTTGGGGCCT TERM 2705 2330151 - 2330138 - T 76 -9.5 -3.87869 | TCAATCCCGCAGAAA GCGGC GACA GCCGC TGCCGACCATCAGGC AHA_2122 2330299 - 2330123 - | hypothetical protein AHA_2123 2330654 - 2330466 - | hypothetical protein AHA_2124 2331217 - 2330651 - | MarR family transcriptional regulator TERM 2706 2331142 - 2331156 + g 73 -6.4 -4.25347 | ATCCTGCTGTGACGG CTGCAT CGG GTGCAG TTTCTCTTGATACTT AHA_2125 2332504 - 2331290 - | hypothetical protein AHA_2126 2331344 - 2332579 + | hypothetical protein TERM 2707 2332717 - 2332702 - gfH 75 -3.2 -4.93968 | ACGGACAATGAAAAA TTGGCC ATCC GGACAA TGAAAGAAGAGAACA AHA_2127 2332495 - 2333589 + | nucleic acid binding protein AHA_2128 2333590 - 2333901 + | hypothetical protein TERM 2708 2333938 - 2333924 - T 100 -12.8 -4.51238 | opp_overlap 2333924 TGCAGAAAAGAGAAA GGCGCC GAG GGCGCC TTTTTTATGCCTGTT TERM 2709 2333924 - 2333938 + T 100 -12.8 -5.30686 | opp_overlap 2333924 TGCAGAAAAGAGAAA GGCGCC GAG GGCGCC TTTTTTATGCCTGTT AHA_2129 2334443 - 2333943 - | dsDNA-mimic protein mtgA 2335272 - 2334565 - | monofunctional biosynthetic peptidoglycan transglycosylase AHA_2131 2335634 - 2335326 - | dsDNA-mimic protein TERM 2710 2335710 - 2335687 - R 93 -4.4 -5.70761 | gap 1, opp_overlap 2335701, overlap 2335689 AAAATAAAAGAAAAA CCCCGTC-GGC AAG GCCAGGCGGTG GCGCGCGGTATTCTA TERM 2711 2335779 - 2335805 + r 95 -15.2 -3.33696 | opp_overlap 2335781, overlap 2335781 CCGTGGCAATAAAAA AACCGGATCCTG GCA CAGGATCCGGTC TTCATTGGGGGAAGG TERM 2712 2335781 - 2335803 + r 100 -17.8 -3.23853 | opp_overlap 2335781, overlap 2335779 GTGGCAATAAAAAAA CCGGATCCTG GCA CAGGATCCGG TCTTCATTGGGGGAA TERM 2713 2335803 - 2335781 - R 100 -17.8 -5.7946 | opp_overlap 2335781 2335779 GTGGCAATAAAAAAA CCGGATCCTG GCA CAGGATCCGG TCTTCATTGGGGGAA minE 2336108 - 2335842 - | cell division topological specificity factor MinE minD 2336923 - 2336111 - | septum site-determining protein MinD minC 2337664 - 2336942 - | septum site-determining protein MinC TERM 2714 2337385 - 2337402 + g 76 -14.1 -3.14602 | overlap 2337383 CCATCACCGCCAGTC CGGCCGC CTTG GCGGCCG TCTTCATCGCCTCGC TERM 2715 2337571 - 2337542 - G 84 -2.7 -5.32944 | gap 1 GGCACAATTAAAAAA CTGGGGCGCCTGAG CCA CTTTGGC-CGCCAG CAACTGGCGGATCCG AHA_2135 2337772 - 2338053 + | hypothetical protein TERM 2716 2338581 - 2338543 - g 76 -6.7 -4.4891 | opp_overlap 2338574 TGGAGCAGCAGAAAA TGGCGCCAGCCGA TCTCAAGGGATCT TGGGCCGGCGCCA TGGGGCAGGTGCAGT AHA_2136 2338050 - 2339009 + | membrane-bound lytic murein transglycosylase B TERM 2717 2339220 - 2339172 - T 89 -13.4 -3.76373 | gap 1, opp_overlap 2339182 2339188 2339189, overlap 2339182 2339188 GGCGGAATATCCAAA CGACAGGCAATAAAAACGGCGGG AATG CCCGCCATTTTTATTGT-TGCCA CGCCGACTTATTCGC TERM 2718 2339211 - 2339182 - T 100 -15.9 -3.17725 | opp_overlap 2339182 2339188 2339189, overlap 2339172 2339188 CCAAACGACAGGCAA TAAAAACGGCGGG AATG CCCGCCATTTTTA TTGTTGCCACGCCGA TERM 2719 2339182 - 2339211 + T 89 -13.7 -3.61398 | opp_overlap 2339172 2339182 2339188, overlap 2339188 2339189 CCAAACGACAGGCAA TAAAAACGGCGGG AATG CCCGCCATTTTTA TTGTTGCCACGCCGA TERM 2720 2339205 - 2339188 - T 100 -10.5 -5.12068 | opp_overlap 2339182 2339188 2339189, overlap 2339182 2339172 GACAGGCAATAAAAA CGGCGGG AATG CCCGCCA TTTTTATTGTTGCCA TERM 2721 2339188 - 2339205 + T 100 -8.3 -5.29445 | opp_overlap 2339188 2339182 2339172, overlap 2339182 2339189 GACAGGCAATAAAAA CGGCGGG AATG CCCGCCA TTTTTATTGTTGCCA TERM 2722 2339189 - 2339204 + T 83 -11.8 -3.76582 | opp_overlap 2339188 2339182 2339172, overlap 2339188 2339182 ACAGGCAATAAAAAC GGCGGG AATG CCCGCC ATTTTTATTGTTGCC sdaA-1 2340598 - 2339228 - | L-serine ammonia-lyase TERM 2723 2340843 - 2340825 - R 100 -11 -4.82901 | opp_overlap 2340825 GTTTGCCCATAAAAA TACCCGAC AAT GCCGGGTA TTTAGGAACCAAATG sdaA-2 2342258 - 2340876 - | L-serine ammonia-lyase TERM 2724 2341364 - 2341416 + g 74 -11.9 -3.47227 | gap 1, opp_overlap 2341367, overlap 2341365 2341371 GCAGCACGGCGGGAA TGATGCCGGCGGCGCCGTTGGTGG GGGCGG TCACCACCCG-GCCGCCGGCGGCG TTCTCCTCGTTGACG TERM 2725 2342431 - 2342404 - R 88 -9.8 -4.41348 | opp_overlap 2342407, overlap 2342407 TCTGCGCCAAATAAA GAAGGAGCGGCC CGGG GGCTGCTCCTTT GTGCGTGTTCAGGCA TERM 2726 2342428 - 2342407 - R 91 -11.5 -4.32678 | opp_overlap 2342407, overlap 2342404 GCGCCAAATAAAGAA GGAGCGGCC CGGG GGCTGCTCC TTTGTGCGTGTTCAG TERM 2727 2342407 - 2342428 + r 100 -13.7 -3.9777 | opp_overlap 2342404 2342407 GCGCCAAATAAAGAA GGAGCGGCC CGGG GGCTGCTCC TTTGTGCGTGTTCAG AHA_2139 2342788 - 2342462 - | hypothetical protein TERM 2728 2342672 - 2342686 + g 80 -5.6 -4.72272 | overlap 2342664 TTCCATCACACCCAC GGTGGC TTT GTCGCC TTTTTGCTCGAAACC TERM 2729 2342933 - 2342961 + H 83 -10.4 -4.00348 | gap 1 GATAAAGCGCGCGCT CAGGGGAATGGAC AGCT GTTCA-TCCCCTG TTTGGTTGATTGCAC AHA_2140 2343016 - 2344254 + | proton/glutamate symporter TERM 2730 2344288 - 2344273 - T 86 -11.8 -3.81414 | opp_overlap 2344273 AGTTGCAATGAACAA GGGGCC CGCA GGCCCC TTTCTTTATGTTTGT TERM 2731 2344273 - 2344288 + T 100 -11.8 -4.74787 | opp_overlap 2344273 AGTTGCAATGAACAA GGGGCC CGCA GGCCCC TTTCTTTATGTTTGT AHA_2141 2344743 - 2344315 - | MerR family transcriptional regulator TERM 2732 2344638 - 2344628 - G 80 -5.4 -4.84359 | TGATCTTCATAAAAA CGAA TAC TTCG GGTCGTAACATCAAA TERM 2733 2345392 - 2345410 + G 74 -11.6 -3.53224 | GGAGCGGGCGCTGGC GGCCCAGC GCA GCGGGGCC TTTGCGGCGGAGCTG atoB 2344832 - 2345995 + | acetyl-CoA acetyltransferase AHA_2142 2347215 - 2345992 - | sensory box/GGDEF family protein AHA_2144 2348601 - 2347345 - | long-chain fatty acid transport protein TERM 2734 2348792 - 2348764 - R 100 -6 -5.61277 | GATAAAAAAAGAAAA GCGTACAGTTGT TTACT ACAGGTGTACGC TGAAACATGAATTCG TERM 2735 2348836 - 2348819 - R 100 -12.7 -5.60993 | opp_overlap 2348821 TTCGGGATAAAAAAA GAGCGCC CGTA GGCGCTC TGGTCAATTCGCTGA AHA_2145 2350153 - 2348855 - | long-chain fatty acid transport protein TERM 2736 2350517 - 2350490 - R 95 -12.8 -4.17516 | gap 1, opp_overlap 2350490 GGGAAAGGAGATAAA CGGGCAG-CCAAC CTG ATTGGTCTGCCCG TTGGCTTGATCCGCT TERM 2737 2350490 - 2350517 + r 78 -12.1 -3.20901 | gap 1, opp_overlap 2350490 GGGAAAGGAGATAAA CGGGCAG-CCAA CCTGA TTGGTCTGCCCG TTGGCTTGATCCGCT AHA_2146 2351307 - 2350564 - | hypothetical protein AHA_2147 2351890 - 2351300 - | RNA polymerase sigma factor TERM 2738 2351915 - 2351940 + r 89 -13.3 -3.64822 | opp_overlap 2351890 2351916, overlap 2351916 TCCTTATTTGAATGA AGGCCAGGATC AACC GATCCTGGCCA TTTGCCTGAGGCCAT TERM 2739 2351916 - 2351939 + r 90 -16.8 -2.78679 | opp_overlap 2351890 2351916, overlap 2351915 CCTTATTTGAATGAA GGCCAGGATC AACC GATCCTGGCC ATTTGCCTGAGGCCA TERM 2740 2351939 - 2351916 - R 100 -16.8 -3.35813 | opp_overlap 2351916 2351915, overlap 2351890 CCTTATTTGAATGAA GGCCAGGATC AACC GATCCTGGCC ATTTGCCTGAGGCCA AHA_2148 2353444 - 2351924 - | hypothetical protein TERM 2741 2352823 - 2352794 - G 70 -9.9 -3.54935 | gap 1, opp_overlap 2352794, overlap 2352783 CAAACGCCCCTGAAA GCGGGGGGAC-TCC AGC GGATGGCGCCCCGC TTCTTTGGCCTGCAG TERM 2742 2352794 - 2352823 + g 76 -9.9 -3.9392 | gap 1, opp_overlap 2352783 2352794 CAAACGCCCCTGAAA GCGGGGGGAC-TCC AGC GGATGGCGCCCCGC TTCTTTGGCCTGCAG AHA_2149 2354940 - 2353441 - | TPR domain-containing protein TERM 2743 2354246 - 2354270 + g 71 -12.8 -3.01712 | opp_overlap 2354234 CCACCGCCTATGGTG GCGGGCAGGC GACTG GCCTGGCCGC TGTTGACCAGCAAGA AHA_2150 2355953 - 2354940 - | von Willebrand factor type A domain-containing protein TERM 2744 2356213 - 2356196 - R 75 -6.9 -4.38203 | overlap 2356201 CAGAGAATCAAGAAA GACGAGC CAGG GCGCGTC CTGCAATGCGGCCGC AHA_2151 2357460 - 2356516 - | hypothetical protein AHA_2152 2358391 - 2357441 - | MoxR protein fadI 2358585 - 2359895 + | 3-ketoacyl-CoA thiolase TERM 2745 2361982 - 2362033 + G 70 -10.1 -3.66784 | gap 2, opp_overlap 2361970, overlap 2361983 GAAGCGCTACGGCGA CCGCTTC-GC-CCCCTGCGATCGCC TCAA GGCGATGGCAGCGGAGCAGCAGCGC TTCTATTGAGCGTGC TERM 2746 2361983 - 2362032 + G 72 -13.6 -2.79749 | gap 2, opp_overlap 2361970, overlap 2361982 AAGCGCTACGGCGAC CGCTTC-GC-CCCCTGCGATCGCC TCAA GGCGATGGCAGCGGAGCAGCAGCG CTTCTATTGAGCGTG fadJ 2359895 - 2362042 + | multifunctional fatty acid oxidation complex subunit alpha TERM 2747 2362075 - 2362104 + F 100 -16.5 -4.62471 | opp_overlap 2362078, overlap 2362078 CAATTGGCCAACCGA CAAGGAGGCGACC CCGG GGTCGCCTCCTTC TTTTTGGCGCTTGGA TERM 2748 2362101 - 2362078 - f 100 -18.2 -3.41878 | opp_overlap 2362078 2362075 TTGGCCAACCGACAA GGAGGCGACC CCGG GGTCGCCTCC TTCTTTTTGGCGCTT TERM 2749 2362078 - 2362101 + F 100 -18.2 -4.42235 | opp_overlap 2362078, overlap 2362075 TTGGCCAACCGACAA GGAGGCGACC CCGG GGTCGCCTCC TTCTTTTTGGCGCTT TERM 2750 2362381 - 2362391 + G 76 -8.2 -4.23674 | overlap 2362375 CTGTATTGGGATACG GGGC CAT GCCC TTTATCTTCCTGAGC AHA_2155 2362338 - 2362478 + | hypothetical protein TERM 2751 2362502 - 2362529 + F 100 -17.2 -5.055 | opp_overlap 2362506 TTTCGTTCATACCGC CAAATGCCAGTC TTCG GACTGGCATTTG TTTTTTGAGCCTTGG TERM 2752 2362525 - 2362506 - f 81 -12.2 -3.59262 | opp_overlap 2362502 GTTCATACCGCCAAA TGCCAGTC TTCG GACTGGCA TTTGTTTTTTGAGCC AHA_2156 2362578 - 2363228 + | YaeQ AHA_2157 2363240 - 2364124 + | auxin efflux carrier TERM 2753 2364138 - 2364167 + T 76 -12.3 -3.14132 | opp_overlap 2364138 2364144, overlap 2364144 GATCCTGTTCAGCAA TAAAAAGGACGCC TGAG GGCATCCTTTTTA TTGCTGCCACGAAAG TERM 2754 2364167 - 2364138 - T 91 -14.5 -3.14344 | opp_overlap 2364138 2364144, overlap 2364144 GATCCTGTTCAGCAA TAAAAAGGACGCC TGAG GGCATCCTTTTTA TTGCTGCCACGAAAG TERM 2755 2364161 - 2364144 - T 100 -9.1 -5.1356 | opp_overlap 2364138 2364144, overlap 2364138 GTTCAGCAATAAAAA GGACGCC TGAG GGCATCC TTTTTATTGCTGCCA TERM 2756 2364144 - 2364161 + T 86 -6.9 -5.1356 | opp_overlap 2364144 2364138, overlap 2364138 GTTCAGCAATAAAAA GGACGCC TGAG GGCATCC TTTTTATTGCTGCCA TERM 2757 2364980 - 2364947 - T 91 -11.9 -4.09511 | gap 1, opp_overlap 2364952, overlap 2364934 2364975 AACACTTGGCTAAAA GTGAAGTGCTGTCATG TTG CA-GATAGCACTTCAC TGAAGACTGCAGGTC AHA_2158 2365982 - 2365002 - | hypothetical protein AHA_2159 2366991 - 2367407 + | hypothetical protein TERM 2758 2367441 - 2367425 - f 78 -12.3 -3.21099 | TCTGGCCAGCATGAA TCCCACC CGG GGTGGGA GCCAGGGGATTTACA AHA_2160 2367459 - 2369393 + | sigma-54-dependent transcriptional regulator YgeV TERM 2759 2369430 - 2369452 + F 81 -12 -3.56325 | overlap 2369447 GGCCCCGCTTGACCG CGCCGCGA CCGACAA TCGCGGCG TTATCATTATGAGAA AHA_2161 2369822 - 2371009 + | hypothetical protein TERM 2760 2371055 - 2371007 - f 83 -11.7 -3.61889 | gap 1, overlap 2371010 2371011 CAAAAACGCGTCAAA TAATGGC-CTGGCCGGGCGGGA AATAAG TCCCGCCCGGCCGTCGTCATCA CGCAGTTATTGTCAC TERM 2761 2371052 - 2371010 - f 85 -11.2 -3.92832 | gap 1, overlap 2371007 2371011 AAACGCGTCAAATAA TGGC-CTGGCCGGGCGGGA AATAAG TCCCGCCCGGCCGTCGTCA TCACGCAGTTATTGT TERM 2762 2371049 - 2371011 - f 81 -13.8 -2.94976 | gap 1, overlap 2371010 2371007 AACGCGTCAAATAAT GGCCTGGCCGGGCGGGA AATAAG TCCCGCCCGGCC-GTCG TCATCACGCAGTTAT AHA_2162 2371137 - 2372336 + | diaminopropionate ammonia-lyase AHA_2163 2372460 - 2373677 + | peptidase TERM 2763 2373685 - 2373714 + F 100 -17.2 -3.05343 | opp_overlap 2373679 2373678 ACAAGTAAGGGGGCT GCCGGGTGGTGA CTGCCA TCACCGCCCGGC TGTTGCAAGTGTGGC TERM 2764 2373728 - 2373761 + F 75 -11 -3.35046 | gap 1, overlap 2373725 2373724 2373726 2373733 2373734 GCTGTTGCAAGTGTG GCCAGTGCCCCGTCT TTCGC AGGCGGGGC-CTTGC TGTTTGACGCGATCG TERM 2765 2373734 - 2373756 + F 75 -12.7 -2.67021 | overlap 2373725 2373724 2373733 2373728 2373726 GCAAGTGTGGCCAGT GCCCCGTCT TTCGC AGGCGGGGC CTTGCTGTTTGACGC hydA 2373796 - 2375220 + | dihydropyrimidinase arcC-1 2375316 - 2376248 + | carbamate kinase TERM 2766 2376291 - 2376271 - f 85 -12.5 -3.54424 | opp_overlap 2376273, overlap 2376273 TTTGATGGTTGCAAA CAGGGGGCC CAA GGCCCCCTT TCTGTTGGCTGGTAC TERM 2767 2376273 - 2376289 + F 100 -15.1 -4.22009 | opp_overlap 2376271 2376273 TGATGGTTGCAAACA GGGGGCC CAA GGCCCCC TTTCTGTTGGCTGGT TERM 2768 2376289 - 2376273 - f 95 -15.1 -3.35046 | opp_overlap 2376273, overlap 2376271 TGATGGTTGCAAACA GGGGGCC CAA GGCCCCC TTTCTGTTGGCTGGT AHA_2166 2376431 - 2377354 + | inner membrane transport protein YijE TERM 2769 2377373 - 2377407 + T 100 -15 -4.08394 | opp_overlap 2377379, overlap 2377379 GATTGCCAGCAAAAA TAAAAAGGGCCCGCCA TCA TGGCGGGCCCTTCTGG TTTTAAGAACACTCT TERM 2770 2377379 - 2377401 + T 100 -20.6 -3.68359 | opp_overlap 2377379, overlap 2377373 CAGCAAAAATAAAAA GGGCCCGCCA TCA TGGCGGGCCC TTCTGGTTTTAAGAA TERM 2771 2377401 - 2377379 - T 100 -20.6 -5.65496 | opp_overlap 2377379 2377373 CAGCAAAAATAAAAA GGGCCCGCCA TCA TGGCGGGCCC TTCTGGTTTTAAGAA AHA_2167 2379016 - 2377424 - | xanthine dehydrogenase accessory factor TERM 2772 2377626 - 2377612 - G 73 -11.4 -3.62224 | AGAGCGGCGCAATAA TGGGGG CGT CCCCCA CGTGGGCGATCACAT AHA_2168 2379884 - 2379036 - | hypothetical protein TERM 2773 2379167 - 2379186 + gH 71 -5.6 -4.30576 | overlap 2379168 GCAGGTTTATCAGGG CGGGCAGC CACT GCTGCTCA TTTTGATAATCGCCA TERM 2774 2379693 - 2379714 + gH 70 -8.7 -3.68302 | opp_overlap 2379690 GGGCAGAAACATCCG GGTGCTGGT GGTG AGCAGCACC TTCTTGCCCTGTTGA AHA_2169 2379865 - 2380518 + | hypotehtical YgfJ TERM 2775 2380757 - 2380771 + FH 70 -2.8 -4.78572 | overlap 2380747 2380759 CATTGTGGAAACTGG TATCGG TTT TCGATG TTTTATTAATTGGAG TERM 2776 2381730 - 2381763 + G 74 -9.5 -3.96387 | gap 1, opp_overlap 2381712, overlap 2381731 GACCCTGCTGGGCTA CCCGCGGGTGCGCGAG ATC CTCGA-CACCTGCGGC TTTGATTACATTGGT TERM 2777 2381731 - 2381762 + G 71 -13 -2.97109 | gap 1, opp_overlap 2381712, overlap 2381730 ACCCTGCTGGGCTAC CCGCGGGTGCGCGAG ATC CTCGA-CACCTGCGG CTTTGATTACATTGG AHA_2170 2380939 - 2384049 + | putative selenate reductase subunit YgfK AHA_2171 2384080 - 2385408 + | putative chlorohydrolase/aminohydrolase AHA_2172 2385489 - 2386265 + | putative selenate reductase subunit YgfM TERM 2778 2388251 - 2388239 - g 78 -4.7 -4.68994 | overlap 2388240 ATCATCATGCAAAAA TCGGG GAT CCCGG ACATCGATCAGGCCA AHA_2173 2386262 - 2389159 + | putative selenate reductase subunit YgfN TERM 2779 2389200 - 2389170 - f 100 -8.9 -5.31091 | gap 1, overlap 2389172 CATAACAAAAGAAAA GGTGAGGGGCGGGC GCAG GCTCGCCCC-CAGC ACCTGACAGCGGAAT TERM 2780 2389993 - 2390006 + G 77 -3.8 -4.89009 | ATCACAGTGCCTGTT CCGT TCAAGT ACGG TTTTTCCTTCGATCT AHA_2174 2389255 - 2390772 + | xanthine/uracil permease family protein AHA_2175 2390797 - 2392113 + | guanine deaminase TERM 2781 2392213 - 2392194 - f 90 -16.4 -2.78384 | opp_overlap 2392181 2392180 2392195 2392196 CTGCGCCGCACGACA GGCGGGGC GTTT GCCCCGCC ACAGCAGGTGAAATG TERM 2782 2392195 - 2392234 + F 81 -2.6 -5.40072 | opp_overlap 2392194, overlap 2392181 2392180 2392196 TGCGCCGCACGACAG GCGGGGCGTTTGCCCCGC CACA GCAGGTGAAATGGCCCGG TTTTTTTAGACGGCA AHA_2176 2392395 - 2393771 + | xanthine/uracil permease family protein AHA_2177 2394101 - 2396419 + | xanthine dehydrogenase subunit XdhA AHA_2178 2396412 - 2397290 + | xanthine dehydrogenase subunit XdhB AHA_2179 2397287 - 2397772 + | xanthine dehydrogenase subunit XdhC TERM 2783 2397975 - 2397949 - f 79 -7.9 -4.44667 | overlap 2397952 2397953 CGCCTGAATAATAAA CAATCGGCTGC GTGCG GCAGCCGGTGG GGTGGCAAGCGACTG TERM 2784 2397972 - 2397952 - f 81 -8.2 -4.33582 | overlap 2397949 2397953 CTGAATAATAAACAA TCGGCTGC GTGCG GCAGCCGG TGGGGTGGCAAGCGA TERM 2785 2397971 - 2397953 - f 78 -11.7 -3.19065 | overlap 2397952 2397949 TGAATAATAAACAAT CGGCTGC GTGCG GCAGCCG GTGGGGTGGCAAGCG TERM 2786 2401187 - 2401145 - g 72 -13.5 -2.80016 | opp_overlap 2401149, overlap 2401148 2401149 GGTGACCATCAAGGA CAAGCTGGCGC-CGTCCACCA TCT CGCTGG-CGCGCGCCAGCCTG ACGGTGAACGAGGGG TERM 2787 2401184 - 2401148 - g 75 -11.6 -3.54743 | opp_overlap 2401149, overlap 2401145 2401149 GACCATCAAGGACAA GCTGGCGC-CGTCCACCA TCT CGCTGG-CGCGCGCCAGC CTGACGGTGAACGAG TERM 2788 2401205 - 2401149 - g 75 -14.4 -2.72364 | gap 1, opp_overlap 2401149, overlap 2401148 2401145 ACCATCAAGGACAAG CTGGCGC-CGTCCACCATCTCGCTGGC GCGC GCCAGCCTGACGGTGAACGAGGGGCAG TGGTTTGCCGAGATC AHA_2180 2398305 - 2401523 + | nuclease TERM 2789 2401561 - 2401546 - T 100 -11.8 -4.92757 | opp_overlap 2401546 TGAGCAATAAGAAAA GGGGCC TGCG GGCCCC TTTCTGTTGTCAGCC TERM 2790 2401546 - 2401561 + T 93 -11.8 -4.27117 | opp_overlap 2401546 TGAGCAATAAGAAAA GGGGCC TGCG GGCCCC TTTCTGTTGTCAGCC TERM 2791 2401640 - 2401610 - T 70 -7 -4.09685 | gap 2, overlap 2401612 2401613 CGGGAGTGCCGAAAA CAGCGAGGCCCATC ACCAG GATGGGCCTC--TG AACTGGACACGCTGA TERM 2792 2401640 - 2401612 - T 70 -8.8 -3.64716 | overlap 2401610 2401613 GGAGTGCCGAAAACA GCGAGGCCCATC ACCAG GATGGGCCTCTG AACTGGACACGCTGA TERM 2793 2401639 - 2401613 - T 72 -12.3 -2.78508 | overlap 2401610 2401612 GAGTGCCGAAAACAG CGAGGCCCATC ACCAG GATGGGCCTCT GAACTGGACACGCTG AHA_2181 2402206 - 2401661 - | hypothetical protein TERM 2794 2402753 - 2402737 - g 73 -10.8 -3.5518 | CCAAGATGGATACAA CCGGCC GTGCA GGCCGG CATCATCACCCAGGA TERM 2795 2402790 - 2402773 - g 71 -9.1 -3.73914 | opp_overlap 2402778 ATCACCCAGGAACAA GCCCAGC GGTT GCTGGAC TCCCTCTATCAACCC AHA_2182 2402710 - 2402898 + | hypothetical protein AHA_2183 2404484 - 2402958 - | putative transporter TERM 2796 2404938 - 2404925 - H 74 -2.3 -5.00616 | overlap 2404928 TTGCCGCTGAAAAAA CAGGC ACCA GCATG CAGCTCGGTCAGATT TERM 2797 2405065 - 2405037 - H 72 -11.7 -2.62616 | opp_overlap 2405040 TGATCCCCGATACGA GCACCCTCTGGCA GGA CGCCAGAGGATGG TTGCCGGCGCTCCCG TERM 2798 2405068 - 2405092 + H 77 -7.8 -4.2828 | gap 1 CGCCAGAGGATGGTT GCCG-GCGCTC CCGG GAGCGCACCGC TTTTGCTACCTGCAA TERM 2799 2406340 - 2406373 + G 70 -13.1 -2.90496 | opp_overlap 2406340 2406341, overlap 2406337 GGGCTATCTCAAGAA TCCTTCCGCCAGTGC CGAG GCGATGGCGGAGGGG TGGTTTCGCAGCGGC AHA_2184 2405120 - 2406742 + | AMP-binding protein TERM 2800 2406772 - 2406809 + F 74 -10 -3.70722 | gap 1, overlap 2406772 TATCCAACGTTTTGA GTT-GGTGCCATTTTGC CTGAA GCAATATGGCGCCAAAC TTCTATGTTCATCAA AHA_2185 2406798 - 2408375 + | KAP P-loop domain-containing protein TERM 2801 2408403 - 2408376 - T 90 -16.4 -2.73364 | opp_overlap 2408374 2408368 GTGTCATTTGAATGA GCTTAACGGGCC AAAT AGCCCGTTAAGC AATATGATACTTTAT AHA_2186 2409050 - 2408415 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2802 2409014 - 2409027 + g 73 -8.1 -4.04927 | overlap 2409002 AGTCCAGGCGTTCGG CGAGC GACT GCTCG TTGTTTACTGCTTGA hisF 2409816 - 2409043 - | imidazole glycerol phosphate synthase subunit HisF AHA_2188 2413968 - 2409997 - | PAS TERM 2803 2412648 - 2412692 + g 79 -13.6 -3.53444 | gap 1 GGGCACCCTCCTGGG CCATCAGCAG-CCGCTGCTCG CTCT CGCGCAGTGCACTGCTGGTGG TTTCGGCGCGGATGC TERM 2804 2412780 - 2412811 + g 80 -14.4 -3.19668 | overlap 2412752 2412774 2412778 TATCGAGCGCCAGCT GCTGGTTGTGCAGC AGTT GCTGCTCGGCCAGC TTGCGTTCGGTGATG AHA_2189 2416118 - 2413965 - | PAS AHA_2190 2417220 - 2416111 - | response regulator receiver TERM 2805 2417312 - 2417346 + r 100 -19.3 -2.91383 | opp_overlap 2417312, overlap 2417314 TTACCCCTTGATGAA GAGGCTTCCGGCCGG ACGGC CCGGCAGGGAGCCTC TCTCTCAATCGACGT TERM 2806 2417346 - 2417312 - R 100 -17.8 -3.14564 | opp_overlap 2417312 2417314 TTACCCCTTGATGAA GAGGCTTCCGGCCGGA CGG CCCGGCAGGGAGCCTC TCTCTCAATCGACGT TERM 2807 2417314 - 2417344 + r 93 -16.1 -3.0094 | opp_overlap 2417312, overlap 2417312 ACCCCTTGATGAAGA GGCTTCCGGCCGG ACGGC CCGGCAGGGAGCC TCTCTCTCAATCGAC hisA 2418129 - 2417386 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisH 2418776 - 2418135 - | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit TERM 2808 2418556 - 2418538 - G 86 -8.8 -4.66163 | opp_overlap 2418546 ATGCCGAGGCAAAAA CCCAGCAG CGG CTGCTTGG CGGCGCGAATGAGCG AHA_2193 2419927 - 2418776 - | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisC 2421013 - 2419943 - | histidinol-phosphate aminotransferase TERM 2809 2420178 - 2420194 + g 93 -7.9 -4.99435 | opp_overlap 2420162 TGCAGGGTTGCCAGC GCGGCCT TGA AGGCGGC TTTTTGCTTGTTGAG TERM 2810 2420486 - 2420501 + g 72 -11.8 -3.28712 | GTCTACCACCACGAT GGCGCG ATCC CGCGCC TTCTCCAGCAGGGCG hisD 2422335 - 2421010 - | histidinol dehydrogenase hisG 2423244 - 2422348 - | ATP phosphoribosyltransferase TERM 2811 2423277 - 2423304 + r 100 -17.8 -3.42503 | opp_overlap 2423277 GTCAAAAACGAAAAA GCCCTCGGAAGT CAGT GCTTCCGAGGGC TTATGAATCTTGCGG TERM 2812 2423304 - 2423277 - R 100 -17.1 -5.18355 | opp_overlap 2423277 GTCAAAAACGAAAAA GCCCTCGGAAG TCAGTG CTTCCGAGGGC TTATGAATCTTGCGG AHA_2197 2423423 - 2423373 - | his operon leader peptide AHA_2198 2423584 - 2423826 + | hypothetical protein TERM 2813 2424473 - 2424499 + G 73 -10.9 -3.61715 | overlap 2424475 CGTGCCATGGATGCC CAGGTGGTGGT GATCA ACCACCACCTC TTCTTCGCCGACATG TERM 2814 2424475 - 2424497 + G 77 -13.5 -3.38812 | overlap 2424473 TGCCATGGATGCCCA GGTGGTGGT GATCA ACCACCACC TCTTCTTCGCCGACA TERM 2815 2425193 - 2425213 + G 79 -11.1 -3.91897 | GACTATGGCGAGCAG GCGCGGC TGTGCGT GCCGCGC TTTCTGCCTGAGCCC AHA_2199 2423894 - 2425816 + | ATP-dependent helicase DinG AHA_2200 2425813 - 2425905 + | hypothetical protein AHA_2201 2425935 - 2426627 + | glycoprotease family protein AHA_2202 2426722 - 2427237 + | Slp family outer membrane lipoprotein AHA_2203 2427255 - 2428112 + | alpha/beta fold family hydrolase AHA_2204 2428311 - 2429987 + | long-chain-fatty-acid--CoA ligase TERM 2816 2430047 - 2430030 - f 95 -12.7 -4.18018 | opp_overlap 2430030 CGTCGTTATGCAAAA CCGTGGG TCAG CCCACGG TTTTTTCTTTTGGCC TERM 2817 2430030 - 2430047 + F 100 -12.7 -5.79595 | opp_overlap 2430030 CGTCGTTATGCAAAA CCGTGGG TCAG CCCACGG TTTTTTCTTTTGGCC TERM 2818 2430528 - 2430545 + G 72 -4.1 -4.57353 | gap 1, overlap 2430530 CCTCGCCAGCTCGAG TACG-CGG CGG CCGACGTG TTTTATCTGCTGCCA rnd 2430057 - 2431196 + | ribonuclease D TERM 2819 2431229 - 2431213 - T 100 -15.1 -5.84432 | opp_overlap 2431213 CACAAGATAAAAAAA GGGGCCC TCG GGGCCCC TTTTTTTGTCGGCGT TERM 2820 2431213 - 2431229 + T 100 -15.1 -5.61596 | opp_overlap 2431213 CACAAGATAAAAAAA GGGGCCC TCG GGGCCCC TTTTTTTGTCGGCGT AHA_2206 2432002 - 2431244 - | hypothetical protein TERM 2821 2432095 - 2432076 - R 72 -12.2 -2.78816 | opp_overlap 2432068 CCAGCCCGTAGGAGA GGATGCAC GGAC GTGCATCC CTCAGAGTTCGTGGG AHA_2207 2432465 - 2432097 - | DksA-type zinc finger protein TERM 2822 2432382 - 2432399 + g 74 -9.9 -3.76048 | ACGCCGACAGGCTTT GAGCTGA CCGA TCAGCTC TTCTCTTACTTGCGC AHA_2208 2433507 - 2432563 - | tRNA-dihydrouridine synthase C AHA_2209 2433726 - 2434103 + | hypothetical protein TERM 2823 2434141 - 2434166 + G 100 -9 -5.27938 | TAATGCTATGGAGTC GGCCTGTCAT TTTTGC GTGACGGGCC TTTTTATTTCCCGCT TERM 2824 2434235 - 2434225 - g 75 -3.2 -4.85782 | overlap 2434202 GCGTCGAAAAACAAA CGGT CAC ACCA TGAATCCGGAAACCC TERM 2825 2434723 - 2434751 + G 73 -8.2 -4.08706 | CCTCGGTGGTGATGC CCGCC-TGACTGCC GCC GGC-GTCAAGGTGG TTTCTCTGGTCGAAC apt 2434133 - 2434780 + | adenine phosphoribosyltransferase TERM 2826 2434833 - 2434854 + F 89 -13.7 -3.66178 | TTGCCTGCGTCCAGA CCGGTGCCC GTAC GGGCATCGG TTTGAAATTCAAGCG dnaX 2434963 - 2437512 + | DNA polymerase III, subunits gamma and tau TERM 2827 2437535 - 2437517 - f 73 -8.8 -3.86346 | overlap 2437520 2437522 TGAGTCGCTGACAAA CACCATGC CGG GCCTGGTG CCCGGTTGAAAAATG AHA_2212 2437628 - 2437957 + | hypothetical protein TERM 2828 2438046 - 2438017 - T 100 -20.9 -2.66316 | opp_overlap 2438017, overlap 2438019 GGCGTGACCAGACGA CACCGCGGATACA GAGA TGTATCCGCGGTG TTTTTTTATCCGGTT TERM 2829 2438017 - 2438046 + T 100 -20.9 -5.63504 | opp_overlap 2438017 2438019 GGCGTGACCAGACGA CACCGCGGATACA GAGA TGTATCCGCGGTG TTTTTTTATCCGGTT TERM 2830 2438044 - 2438019 - T 95 -17.7 -2.87468 | opp_overlap 2438017, overlap 2438017 CGTGACCAGACGACA CCGCGGATACA GAGA TGTATCCGCGG TGTTTTTTTATCCGG AHA_2213 2439831 - 2438143 - | dolichyl-phosphate-mannose-protein mannosyltransferase family protein AHA_2214 2440212 - 2440325 + | hypothetical protein TERM 2831 2441441 - 2441415 - g 71 -5 -4.46576 | AAAAACCACAATAAA CCCAGCGCCATC GTG GATGACAAAGGG CATATTCATTATTCC AHA_2215 2440869 - 2441939 + | transcriptional regulator, LuxR family protein AHA_2216 2442024 - 2442446 + | CBS domain-containing protein TERM 2832 2442500 - 2442480 - f 86 -12.6 -3.64703 | opp_overlap 2442480 CTGTTGTCATCCAAA GAGCAGGC ATCTG GCCTGCTC TTTCTTATTGTGATG TERM 2833 2442480 - 2442500 + F 100 -12.6 -4.53419 | opp_overlap 2442480 CTGTTGTCATCCAAA GAGCAGGC ATCTG GCCTGCTC TTTCTTATTGTGATG hrpA 2442664 - 2446563 + | ATP-dependent RNA helicase HrpA AHA_2218 2446630 - 2447496 + | hypothetical protein AHA_2219 2447522 - 2447890 + | ribosomal L25p family protein TERM 2834 2447910 - 2447941 + F 100 -19.6 -4.61527 | opp_overlap 2447914, overlap 2447914 CAACGAACGTTCCAG TAAAGAGGCCACCC AAAC GGGTGGCCTCTTTG TTTTTACAGCATTTT TERM 2835 2447914 - 2447937 + F 100 -18.2 -4.85782 | opp_overlap 2447914, overlap 2447910 GAACGTTCCAGTAAA GAGGCCACCC AAAC GGGTGGCCTC TTTGTTTTTACAGCA TERM 2836 2447937 - 2447914 - f 100 -18.2 -3.737 | opp_overlap 2447914 2447910 GAACGTTCCAGTAAA GAGGCCACCC AAAC GGGTGGCCTC TTTGTTTTTACAGCA TERM 2837 2447987 - 2447975 - f 81 -2 -5.35224 | opp_overlap 2447975 CCGATAAAAATAAAA TACT CAAAT AGTA CTGTTAGTCTTTACT TERM 2838 2449452 - 2449487 + G 73 -12.6 -3.18681 | gap 1, opp_overlap 2449445 CCCGAACAGGCCGCC CACCTGGTTGGGGACGC CCT GCG-CCTCGAGCAGGTG TTGCTCAACTTGACC AHA_2220 2448084 - 2451266 + | two-component system sensor protein TERM 2839 2451335 - 2451349 + G 78 -2.8 -5.00616 | opp_overlap 2451327 CGGCAAATCCTCAAG GAGG AGTACAG CCTC TTTTTTGCCAAGGGC AHA_2222 2451263 - 2452264 + | two-component system regulatory protein AHA_2221 2452898 - 2452254 - | metallo-beta-lactamase family protein AHA_2223 2454026 - 2452926 - | tRNA 2-selenouridine synthase selD 2455060 - 2454023 - | selenide, water dikinase TERM 2840 2455411 - 2455379 - R 84 -13.3 -3.08464 | opp_overlap 2455393 2455394 2455395 TCATGACGCAGGCAA GGCTCTCCCCCGGCG CAG CCCCGAAGGCGAGCC ATGCTGCCATCGGGG TERM 2841 2455393 - 2455431 + r 71 -5.9 -4.25283 | opp_overlap 2455379, overlap 2455394 2455395 AGGCTCTCCCCCGGC GCAG-CCCCGAAGGCGAGC CAT GCT-GCCATCGGGGCCATC TTTTGGTGGGGAACT TERM 2842 2455394 - 2455429 + r 74 -9.6 -3.73042 | gap 1, opp_overlap 2455379, overlap 2455393 2455395 GGCTCTCCCCCGGCG CAGCCCCGAAGGCGAGC CAT GCT-GCCATCGGGGCCA TCTTTTGGTGGGGAA TERM 2843 2455395 - 2455428 + r 76 -13.1 -2.83504 | gap 1, opp_overlap 2455379, overlap 2455394 2455393 GCTCTCCCCCGGCGC AGCCCCGAAGGCGAGC CAT GCT-GCCATCGGGGCC ATCTTTTGGTGGGGA AHA_2225 2456630 - 2455446 - | putative acyltransferase TERM 2844 2456827 - 2456807 - H 70 -3.1 -4.68593 | overlap 2456808 2456818 TTTATCATCCAAAAA CCAGCAAGG GAT CCGCGCTGC AGCGAAGGTGAAGAG AHA_2226 2456891 - 2457535 + | glutathione S-transferase TERM 2845 2457744 - 2457726 - T 74 -4.4 -4.82901 | overlap 2457727 GTTTTTGCATAAAAA TGCCGGGA ATG TCCCTGCT GGCGGGCTGTGTATG TERM 2846 2457920 - 2457938 + T 93 -8.8 -4.77157 | opp_overlap 2457920 GGCTGCATAAAAAAA GCCCGC TTTGATC GCGGGC TTTTTGATGGCTTGC TERM 2847 2457938 - 2457920 - T 100 -8.8 -5.60993 | opp_overlap 2457920 GGCTGCATAAAAAAA GCCCGC TTTGATC GCGGGC TTTTTGATGGCTTGC AHA_2227 2459258 - 2458017 - | methyltransferase AHA_2228 2459558 - 2461072 + | flagellin TERM 2848 2461073 - 2461124 + T 83 -10.2 -3.97368 | opp_overlap 2461080 2461121, overlap 2461113 CTGCTGCAGTCATGA TCAGCAAGTTGAACTCATGGCACT CTGC AGTGCCATGAGTTCAACAAAGGGA TTTATCCCTTAGCAG TERM 2849 2461117 - 2461080 - T 100 -24.5 -3.23395 | opp_overlap 2461073 2461113 AGTCATGATCAGCAA GTTGAACTCATGGCACT CTGC AGTGCCATGAGTTCAAC AAAGGGATTTATCCC TERM 2850 2461185 - 2461217 + T 100 -22.9 -3.58269 | opp_overlap 2461185 2461188, overlap 2461188 GAATTGATGCTGAAA CAACAGAGGCCGTCC TAT GGATGGCCTCTGTTG TTTGGCGGTACGTTA TERM 2851 2461217 - 2461185 - T 100 -20.7 -3.58269 | opp_overlap 2461185 2461188, overlap 2461188 GAATTGATGCTGAAA CAACAGAGGCCGTCC TAT GGATGGCCTCTGTTG TTTGGCGGTACGTTA TERM 2852 2461214 - 2461188 - T 100 -16.6 -3.92542 | opp_overlap 2461185 2461188, overlap 2461185 TTGATGCTGAAACAA CAGAGGCCGTCC TAT GGATGGCCTCTG TTGTTTGGCGGTACG TERM 2853 2461188 - 2461214 + T 100 -18.8 -3.92542 | opp_overlap 2461188 2461185, overlap 2461185 TTGATGCTGAAACAA CAGAGGCCGTCC TAT GGATGGCCTCTG TTGTTTGGCGGTACG AHA_2229 2462660 - 2461230 - | methyl-accepting chemotaxis protein AHA_2230 2462746 - 2463018 + | acylphosphatase TERM 2854 2463072 - 2463052 - T 100 -14 -3.99062 | opp_overlap 2463052 AACAGCCATGAGAAA CGGGAGCC ACACA GGCTCCCG TTTGCATCGATAGCA TERM 2855 2463052 - 2463072 + T 95 -14 -3.6682 | opp_overlap 2463052 AACAGCCATGAGAAA CGGGAGCC ACACA GGCTCCCG TTTGCATCGATAGCA AHA_2231 2463731 - 2463096 - | putative glutathione S-transferase protein TERM 2856 2464307 - 2464324 + G 74 -2.6 -4.85599 | opp_overlap 2464321, overlap 2464309 GCGCTCCGCTGTGGG GTCGGT AAAAAC ACCGCC TTTTTGTGGCGTCAC AHA_2232 2463959 - 2464921 + | hypothetical protein TERM 2857 2464929 - 2464953 + T 70 -9.9 -3.39895 | opp_overlap 2464932, overlap 2464932 2464952 GGACATAGCCAAATA AAAGGGAGGCC TCA GGCCTCCCTCG TTGCTTGATGACCGG TERM 2858 2464950 - 2464932 - T 100 -16 -4.92385 | opp_overlap 2464929 2464932 CATAGCCAAATAAAA GGGAGGCC TCA GGCCTCCC TCGTTGCTTGATGAC TERM 2859 2464932 - 2464950 + T 87 -16 -2.85896 | opp_overlap 2464932, overlap 2464929 CATAGCCAAATAAAA GGGAGGCC TCA GGCCTCCC TCGTTGCTTGATGAC metG 2467009 - 2464976 - | methionyl-tRNA synthetase AHA_2234 2467196 - 2468278 + | mrp protein TERM 2860 2468309 - 2468327 + F 100 -12.4 -5.39721 | CTGGGGTGGATTTGA GGGTGGGC ATG GCTCACCC TTTTTTATATAATGG udk 2468388 - 2469032 + | uridine kinase TERM 2861 2469059 - 2469043 - f 76 -10.8 -3.65294 | opp_overlap 2469043, overlap 2469039 GTTGAGAGAAATCAA GCCGGG TGATG CCCGGC TTTTTTAAATGAACA TERM 2862 2469043 - 2469059 + F 100 -11.5 -5.08824 | opp_overlap 2469039 2469043 GTTGAGAGAAATCAA GCCGGGT GAT GCCCGGC TTTTTTAAATGAACA TERM 2863 2469425 - 2469381 - g 70 -11.9 -3.18264 | overlap 2469382 GCGGTGACCTATGAA TCGGTCACCCTGCCGGCCGAC ATC GTGGGCTGGCTGGATGGCCGC TCGTCCCTGGCCCGC TERM 2864 2469424 - 2469382 - g 76 -15.4 -2.50816 | overlap 2469381 CGGTGACCTATGAAT CGGTCACCCTGCCGGCCGAC ATC GTGGGCTGGCTGGATGGCCG CTCGTCCCTGGCCCG dcd 2469096 - 2469677 + | deoxycytidine triphosphate deaminase TERM 2865 2469737 - 2469717 - T 95 -12.5 -4.11484 | opp_overlap 2469712 2469719, overlap 2469719 GGCAATGTGTTAAAA GAGGGCGCC GAT GGCGCCCTT CTCCATTTGCTTCGG TERM 2866 2469719 - 2469735 + T 95 -15.1 -3.49878 | opp_overlap 2469717 2469719, overlap 2469712 CAATGTGTTAAAAGA GGGCGCC GAT GGCGCCC TTCTCCATTTGCTTC TERM 2867 2469735 - 2469719 - T 95 -15.1 -3.6543 | opp_overlap 2469719 2469712, overlap 2469717 CAATGTGTTAAAAGA GGGCGCC GAT GGCGCCC TTCTCCATTTGCTTC AHA_2237 2469803 - 2469711 - | hypothetical protein AHA_2238 2470085 - 2471554 + | inorganic phosphate transporter TERM 2868 2471583 - 2471597 + T 100 -8.5 -5.16237 | opp_overlap 2471583 AAGCGTGTTGAGAAA GGGCC CTTGC GGCCC TTTTTTCATGGCCTT TERM 2869 2471597 - 2471583 - T 71 -8.5 -3.86194 | opp_overlap 2471583 AAGCGTGTTGAGAAA GGGCC CTTGC GGCCC TTTTTTCATGGCCTT TERM 2870 2472327 - 2472347 + T 100 -15.5 -4.84359 | opp_overlap 2472327 CGCACCTAAAAAAAA GAGCCACAC AAT GTGTGGCTC TTTTTGTCAGACTAG TERM 2871 2472347 - 2472327 - T 100 -15.5 -5.81412 | opp_overlap 2472327 CGCACCTAAAAAAAA GAGCCACAC AAT GTGTGGCTC TTTTTGTCAGACTAG AHA_2239 2475489 - 2472370 - | ribonuclease E TERM 2872 2475882 - 2475860 - H 70 -6.8 -4.16016 | CCATTTTTCAACAAA GCATGCAGCC AAG GGCCGCCGGC AGTGTTAAAATCCGC TERM 2873 2476380 - 2476365 - g 70 -10.4 -3.61398 | GCTGGTTGCCAAGAA GCGCAG CGCC CTGCGC AGCCTGCATGAACAA AHA_2240 2475862 - 2476845 + | ribosomal large subunit pseudouridine synthase C AHA_2241 2476845 - 2477492 + | HAD family hydrolase TERM 2874 2477549 - 2477518 - T 100 -18.2 -4.258 | opp_overlap 2477525, overlap 2477519 2477525 TGACCGATGAATAAA CGAAAAACGGGAGC CTTG GCTCCCGTTTTTCA TGGCTGACATGCCGC TERM 2875 2477548 - 2477519 - T 100 -19.5 -3.14998 | opp_overlap 2477525, overlap 2477518 2477525 GACCGATGAATAAAC GAAAAACGGGAGC CTTG GCTCCCGTTTTTC ATGGCTGACATGCCG TERM 2876 2477542 - 2477525 - T 100 -12.7 -5.09521 | opp_overlap 2477525, overlap 2477519 2477518 TGAATAAACGAAAAA CGGGAGC CTTG GCTCCCG TTTTTCATGGCTGAC TERM 2877 2477525 - 2477542 + T 100 -12.7 -4.7497 | opp_overlap 2477525 2477519 2477518 TGAATAAACGAAAAA CGGGAGC CTTG GCTCCCG TTTTTCATGGCTGAC maf-2 2478280 - 2477570 - | septum formation protein Maf TERM 2878 2478506 - 2478562 + G 76 -8.1 -4.11183 | gap 4 GCGACCGTCCCGTTG GCCGGCC-TGCTGGCGGATCGCCACGGCC GCA GGCCG-G-TGATCC-TGAGTGGGGCCGGC TTGTTTATGCTGGCG AHA_2243 2478335 - 2479528 + | multidrug efflux system protein MdtL TERM 2879 2480445 - 2480424 - g 76 -10.9 -3.6968 | overlap 2480416 GCACAAGCGCAACAA CCACAACAC CAAG GTGCTGTGG CTGCGCGACGAGATC AHA_2244 2479531 - 2480505 + | HTH-type transcriptional regulator YidZ AHA_2245 2480575 - 2481240 + | hypothetical protein AHA_2246 2481489 - 2482010 + | hypothetical protein TERM 2880 2482137 - 2482166 + G 79 -11.5 -3.86346 | gap 1, opp_overlap 2482136 2482137 GACCAGTGGCGAAAT CCATCGTC-GTCAC CAC GTGACTGCCGATGG TTTCTACCGCGGTAA rpmF 2482030 - 2482197 + | ribosomal protein L32 TERM 2881 2482261 - 2482294 + G 95 -15.4 -4.09739 | opp_overlap 2482265 GATATTGGCCCCTCG GAAACAGTGCCTGC CGCCGT GCAGGCACTGTCTC TTTTACCCCAGTTAA TERM 2882 2482290 - 2482265 - g 83 -14.8 -3.53012 | opp_overlap 2482261 TTGGCCCCTCGGAAA CAGTGCCTGC CGCCGT GCAGGCACTG TCTCTTTTACCCCAG TERM 2883 2482338 - 2482312 - g 72 -8 -4.1899 | TTACCCCAGTTAAAA CTGATCCTGGTC GGT GACCAACACCAG ACCACCCCTCTTTTG TERM 2884 2482889 - 2482901 + G 76 -5.5 -4.63486 | overlap 2482890 GTGAGTGCGACGTGA TCGTC TGC GACGG TTTTGTTGGCAACGT TERM 2885 2483131 - 2483099 - g 74 -5.4 -4.57569 | gap 1, opp_overlap 2483104, overlap 2483100 2483101 2483103 GCATTGTGGTAAAAA GCCAC-GGGCGGGCC GAAC GGCGCGCCCTGTGTA ACGCGATCCTGCTGG TERM 2886 2483104 - 2483125 + G 70 -12.9 -2.87564 | opp_overlap 2483103 2483101 2483100 2483099 GTGGTAAAAAGCCAC GGGCGGGCC GAAC GGCGCGCCC TGTGTAACGCGATCC plsX 2482207 - 2483226 + | fatty acid/phospholipid synthesis protein PlsX fabH 2483234 - 2484193 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2887 2484191 - 2484235 + F 100 -7.9 -5.1764 | gap 1, overlap 2484196 GCGCTGGTTCGCCTC TGATCGTGGTCGGGATGAGC AATCTG GCTCATCCTG-CCGCTCTCA TTTTTGTCTTATCTA TERM 2888 2484196 - 2484230 + F 71 -10.8 -3.24588 | gap 1, overlap 2484191 GGTTCGCCTCTGATC GTGGTCGGGATGAGC AATCTG GCTCATCCTG-CCGC TCTCATTTTTGTCTT fabD 2484263 - 2485198 + | malonyl CoA-acyl carrier protein transacylase fabG 2485212 - 2485946 + | 3-oxoacyl-(acyl-carrier-protein) reductase acpP 2486104 - 2486340 + | acyl carrier protein TERM 2889 2486351 - 2486382 + F 100 -18.2 -3.40843 | opp_overlap 2486356 2486359, overlap 2486356 AATAAGTTCCTGTTC TGAAAGAAGCGGCC CAAG GGCCGCTTCTTTTA TGTTTACCCCTTTTC TERM 2890 2486377 - 2486356 - f 100 -15.9 -3.53012 | opp_overlap 2486351 2486356, overlap 2486359 GTTCCTGTTCTGAAA GAAGCGGCC CAAG GGCCGCTTC TTTTATGTTTACCCC TERM 2891 2486356 - 2486377 + F 100 -15.9 -4.78848 | opp_overlap 2486356 2486359, overlap 2486351 GTTCCTGTTCTGAAA GAAGCGGCC CAAG GGCCGCTTC TTTTATGTTTACCCC TERM 2892 2486374 - 2486359 - f 86 -11.8 -3.90744 | opp_overlap 2486356 2486351, overlap 2486356 CCTGTTCTGAAAGAA GCGGCC CAAG GGCCGC TTCTTTTATGTTTAC AHA_2253 2486423 - 2487664 + | beta-ketoacyl-acyl carrier protein synthase II TERM 2893 2487687 - 2487710 + G 100 -16.8 -5.24129 | opp_overlap 2487685 TGGGCGGATAGTATG GGCCCGATAC GACA GTATCGGGCC TTTTTTATCGGAGGG AHA_2254 2487684 - 2488538 + | aminodeoxychorismate lyase TERM 2894 2488554 - 2488593 + F 86 -14.2 -2.94912 | gap 1 TCGGCTTTACACCCT GCTCGCGGGCGCGGCG-CT GAC AGTCGCCGTGGCCGGGGGC TATGTACATTACAAA AHA_2255 2488618 - 2489529 + | hypothetical protein tmk 2489529 - 2490170 + | thymidylate kinase holB 2490155 - 2491102 + | DNA polymerase III, delta' subunit AHA_2258 2491124 - 2491903 + | putative deoxyribonuclease YcfH TERM 2895 2491932 - 2491908 - f 100 -15.7 -4.37211 | opp_overlap 2491911, overlap 2491911 CAAAGCGATAACAAA CAACGCCCCGC ATA GCGGGGCGTTT TACTATAACAATCAG TERM 2896 2491929 - 2491911 - f 100 -17.4 -4.28115 | opp_overlap 2491911, overlap 2491908 AGCGATAACAAACAA CGCCCCGC ATA GCGGGGCG TTTTACTATAACAAT TERM 2897 2491911 - 2491929 + F 100 -17.4 -4.3467 | opp_overlap 2491911 2491908 AGCGATAACAAACAA CGCCCCGC ATA GCGGGGCG TTTTACTATAACAAT TERM 2898 2492141 - 2492116 - f 78 -12.1 -3.30619 | opp_overlap 2492116 AAGCACTCTTCATAA GTATCGATAAT ATTC ATTATCGATAC TTGATAGATCTGCAA TERM 2899 2492116 - 2492141 + F 78 -12.1 -3.20382 | opp_overlap 2492116 AAGCACTCTTCATAA GTATCGATAAT ATTC ATTATCGATAC TTGATAGATCTGCAA AHA_2259 2492203 - 2493231 + | phage integrase family protein AHA_2260 2493694 - 2493392 - | hypothetical protein AHA_2261 2493410 - 2493679 + | hypothetical protein TERM 2900 2493761 - 2493735 - TR 100 -11.6 -5.67063 | GCGAGCATAAAAAAA GCCAGGTACGAA TTC CTTGTACCTGGC ATAGGGGAATTGGCT TERM 2901 2493812 - 2493838 + Tr 74 -7.3 -4.11216 | ACTGGTGTTCGGATA GCCTTAAGCTT AGACA AGGCTCAAGGC TTTTCAAGATCCACG yebU 2495510 - 2493900 - | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 2902 2495433 - 2495409 - GTR 100 -16.5 -4.56597 | opp_overlap 2495412 2495429 CGTGGCGGGTAAAAA CAAGCCCGGCA CAG TGCCGGGCTTA AGTGAGCTTGGGTGA TERM 2903 2495412 - 2495430 + gTr 93 -16 -3.07994 | opp_overlap 2495409, overlap 2495429 GGCGGGTAAAAACAA GCCCGGCA CAG TGCCGGGC TTAAGTGAGCTTGGG AHA_2263 2498010 - 2495458 - | paraquat-inducible protein B TERM 2904 2497201 - 2497233 + gH 71 -8.4 -3.87815 | overlap 2497166 2497192 ACCGCGGGCCGCCTC GGCCAGGCCTTTGT AGAGG GTGAAGACCTGGCC TTTCTCCGGCTCCGG TERM 2905 2498530 - 2498515 - H 73 -10.4 -3.39449 | GGGCAGCAACATGAA GCTGGC CAGC GCCAGC AGCCCCCAGGACCAG prpB 2499438 - 2500325 + | 2-methylisocitrate lyase AHA_2266 2500337 - 2501464 + | 2-methylcitrate synthase prpD 2501594 - 2503039 + | 2-methylcitrate dehydratase TERM 2906 2503092 - 2503075 - T 100 -14.1 -4.62475 | opp_overlap 2503075 AGCCATAAACGAAAA GCGGGCC ACTC GGCCCGC TTTGTCATGTCTGCC TERM 2907 2503075 - 2503092 + T 100 -14.1 -4.04318 | opp_overlap 2503075 AGCCATAAACGAAAA GCGGGCC ACTC GGCCCGC TTTGTCATGTCTGCC AHA_2268 2503867 - 2503124 - | hypothetical protein AHA_2269 2504067 - 2504444 + | putative polyhydroxyalkanoic acid system protein TERM 2908 2504563 - 2504585 + F 77 -4.2 -4.91109 | gap 1, overlap 2504566 TTTTTTGTTTTATTT TGAGAGGCA TGAAAT TGCCTC-CA TTTTTGTCATGAAAC TERM 2909 2506036 - 2506020 - g 75 -3.6 -4.88736 | opp_overlap 2506020 2506026, overlap 2506021 CATCACCGATAAAAA GCGGGT GCCGG ACCCGG CTTTCATCGTCGAGC AHA_2270 2504725 - 2506149 + | hypothetical protein TERM 2910 2506255 - 2506207 - T 100 -4.6 -5.7946 | gap 1, opp_overlap 2506220, overlap 2506220 CCTGCAAGAAAAAAA GTGAAAAAGAAAAGAGGCCAACC CGGA GGTTGGCCTCTTT-CATTGCGGC AGTGGCACCTTACTC TERM 2911 2506220 - 2506243 + T 100 -16.8 -3.90291 | opp_overlap 2506207 2506220 AAGTGAAAAAGAAAA GAGGCCAACC CGGA GGTTGGCCTC TTTCATTGCGGCAGT TERM 2912 2506243 - 2506220 - T 100 -16.8 -5.29885 | opp_overlap 2506220, overlap 2506207 AAGTGAAAAAGAAAA GAGGCCAACC CGGA GGTTGGCCTC TTTCATTGCGGCAGT AHA_2271 2507065 - 2506265 - | TPR repeat-containing protein AHA_2272 2507758 - 2507108 - | TetR family transcriptional regulator AHA_2273 2508944 - 2507760 - | patatin family phospholipase TERM 2913 2508995 - 2508970 - R 95 -12.6 -4.18018 | gap 1, opp_overlap 2508966 CCTTCTCATGCAAAA CCGGCCCA-GC AGAGG GCATGGGCCGG TGGATCATTACGCAA AHA_2274 2509611 - 2509033 - | PhaF TERM 2914 2509725 - 2509714 - H 79 -3 -5.28176 | TCTATGGAGAAAAAA TAGA GGGT TCTA CCTAATAACGGAACA AHA_2275 2509917 - 2511830 + | short chain dehydrogenase TERM 2915 2511893 - 2511862 - T 100 -13.8 -4.7497 | opp_overlap 2511862 2511863 2511868, overlap 2511863 CTGAGGTAGCAAAAA CGGAAAGGGCCTGA GCAA TCAGGCCCTTTTCA TTTGCGGCTGCGGGC TERM 2916 2511862 - 2511893 + T 89 -13.8 -3.57144 | opp_overlap 2511862 2511863, overlap 2511863 2511868 CTGAGGTAGCAAAAA CGGAAAGGGCCTGA GCAA TCAGGCCCTTTTCA TTTGCGGCTGCGGGC TERM 2917 2511863 - 2511892 + T 91 -17.3 -2.74144 | opp_overlap 2511863 2511862, overlap 2511862 2511868 TGAGGTAGCAAAAAC GGAAAGGGCCTGA GCAA TCAGGCCCTTTTC ATTTGCGGCTGCGGG TERM 2918 2511892 - 2511863 - T 95 -15.1 -3.445 | opp_overlap 2511862 2511863 2511868, overlap 2511862 TGAGGTAGCAAAAAC GGAAAGGGCCTGA GCAA TCAGGCCCTTTTC ATTTGCGGCTGCGGG TERM 2919 2511868 - 2511887 + T 100 -13.6 -4.55128 | opp_overlap 2511863 2511862, overlap 2511863 2511862 TAGCAAAAACGGAAA GGGCCTGA GCAA TCAGGCCC TTTTCATTTGCGGCT AHA_2276 2512803 - 2511880 - | putative lipase transmembrane protein AHA_2277 2512950 - 2513264 + | DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS AHA_2278 2513543 - 2514820 + | phage integrase family site specific recombinase AHA_2279 2515032 - 2517011 + | S16 family peptidase fabA 2517093 - 2517653 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 2920 2517709 - 2517683 - T 86 -15.2 -2.86217 | opp_overlap 2517683 2517688, overlap 2517688 GTCAAACTGAACAAC GTAAAGGGGCCA TCA TGGCCCCTTTCC TTTTGCAATGAGTGA TERM 2921 2517683 - 2517709 + T 100 -15.2 -4.14739 | opp_overlap 2517683 2517688, overlap 2517688 GTCAAACTGAACAAC GTAAAGGGGCCA TCA TGGCCCCTTTCC TTTTGCAATGAGTGA TERM 2922 2517704 - 2517688 - T 93 -13.7 -3.8579 | opp_overlap 2517688 2517683, overlap 2517683 ACTGAACAACGTAAA GGGGCCA TCA TGGCCCC TTTCCTTTTGCAATG TERM 2923 2517688 - 2517704 + T 100 -13.7 -4.20806 | opp_overlap 2517683 2517688, overlap 2517683 ACTGAACAACGTAAA GGGGCCA TCA TGGCCCC TTTCCTTTTGCAATG AHA_2281 2517912 - 2517736 - | hypothetical protein TERM 2924 2517967 - 2517945 - R 100 -9.9 -5.7946 | opp_overlap 2517945 CGTGGAACAAAAAAA GCGACCAAT TTTTC ATCGGTCGC TTTCATCTTTACCCC TERM 2925 2517945 - 2517967 + r 71 -7.7 -4.00532 | opp_overlap 2517945 CGTGGAACAAAAAAA GCGACCAAT TTTTC ATCGGTCGC TTTCATCTTTACCCC AHA_2282 2519713 - 2518076 - | hypothetical protein TERM 2926 2519168 - 2519182 + g 71 -5.6 -4.27441 | opp_overlap 2519168, overlap 2519155 2519164 ACCGGTCACCAGATA CTGGCC GTT GTCCAG TTTCTTGATACTGGT uup 2521644 - 2519722 - | ABC transporter ATP-binding protein TERM 2927 2519971 - 2519996 + g 83 -9.6 -4.3467 | TTTTGTGGCAGCAGG CGCCGGCGCC ACGACA GGCTCTGGCG TTTTGCTCTGCACCT TERM 2928 2521697 - 2521672 - R 90 -6.1 -5.26875 | gap 1, opp_overlap 2521672 TTGCTAATGAAAAAA CGGGTGGCAGAC TGG ATCTCCC-CCCG TTTCATCGTCAAATC AHA_2284 2521949 - 2521719 - | thiol-disulfide isomerase and thioredoxin AHA_2285 2524111 - 2521949 - | 23S rRNA m(2)G2445 methyltransferase TERM 2929 2523630 - 2523618 - G 74 -9.1 -3.89346 | opp_overlap 2523629 CCCTGACGGTAGAAA CGCTG GTG CAGCG CGGGGCCTGACAAGT TERM 2930 2524493 - 2524528 + r 100 -14 -5.23316 | overlap 2524495 TGTAAACCCCGTGTT TGGCCCTCCCGTTATC GTCC GTAAACGGGAGGGCTA TTTTTTCATCTCCTC TERM 2931 2524495 - 2524526 + r 100 -14.4 -4.23988 | overlap 2524493 TAAACCCCGTGTTTG GCCCTCCCGTTATC GTCC GTAAACGGGAGGGC TATTTTTTCATCTCC TERM 2932 2524664 - 2524692 + r 100 -13.9 -5.00616 | GTAGTGTGTGTTTGC CGCCCTCTTATCA AAT TGATCGGAGGGCG TTTTTTGCACAAAGC AHA_2286 2525353 - 2524817 - | hypothetical protein pyrD 2526451 - 2525441 - | dihydroorotate dehydrogenase 2 TERM 2933 2525710 - 2525741 + g 100 -7.4 -5.24531 | TGTCGCGCTCAAGGG TGGTATTGGTGG CAATCACC CCATCAATGCCA TTTTTTATCAAGGAT TERM 2934 2526318 - 2526298 - G 83 -7.5 -4.65933 | opp_overlap 2526298 GATTGGCAAAAGAAA GCCCCATGA CAG TGACGGGGC GTTTGGGCAAGGAGT TERM 2935 2526490 - 2526470 - R 100 -15.4 -5.40072 | opp_overlap 2526470 TGCTCCTTAAAAAAA GCCCCGGC AACTG GCCGGGGC TTTGGGTGTGATACC TERM 2936 2526470 - 2526490 + r 95 -15.4 -3.727 | opp_overlap 2526470 TGCTCCTTAAAAAAA GCCCCGGC AACTG GCCGGGGC TTTGGGTGTGATACC AHA_2288 2531366 - 2526528 - | NAD-glutamate dehydrogenase TERM 2937 2531556 - 2531538 - R 83 -7.5 -4.59853 | TTAAGCTGTGAAAAA TTTTGCC GTTCT GGCAAAA AACAGAAAATCCCAC AHA_2289 2531866 - 2531645 - | hypothetical protein TERM 2938 2531930 - 2531907 - R 95 -14.6 -3.53012 | opp_overlap 2531901 2531923 GCCCGGGTGTTGAAA GGGTGGGAGA TGGC TCCCCCACCC CGTCGGGTTTACTGC pepN 2534563 - 2531939 - | aminopeptidase N TERM 2939 2534654 - 2534671 + r 90 -12.7 -3.86031 | opp_overlap 2534654 TTCAGGCAAAAGAAA GGGCGAC TTCA GTCGCCC TTGTTGATTAATTGA TERM 2940 2534671 - 2534654 - R 100 -12.7 -4.68908 | opp_overlap 2534654 TTCAGGCAAAAGAAA GGGCGAC TTCA GTCGCCC TTGTTGATTAATTGA prc 2536713 - 2534698 - | carboxy-terminal protease TERM 2941 2535141 - 2535151 + g 71 -8.2 -3.82824 | GGAAGCTGATGTCCG GGGC GAC GCCC TTGTTCTGGGTGCTG proQ 2537360 - 2536722 - | putative solute/DNA competence effector AHA_2293 2537920 - 2537462 - | GAF domain-containing protein AHA_2294 2538489 - 2538031 - | hypothetical protein TERM 2942 2538348 - 2538363 + g 75 -3.3 -4.91109 | overlap 2538346 AACTGGTGTGGGACA GATCA CAAATC TGATC TTTTTCTGATCCCGC ccoN 2538707 - 2540197 + | cytochrome c oxidase, Cbb3-type, subunit I ccoO 2540214 - 2540828 + | cytochrome c oxidase, Cbb3-type, subunit II ccoQ 2540841 - 2541020 + | cytochrome c oxidase, cbb3-type, CcoQ subunit ccoP 2541020 - 2542009 + | cytochrome c oxidase, cbb3-type, subunit III TERM 2943 2542036 - 2542065 + F 100 -18.1 -3.83921 | opp_overlap 2542042, overlap 2542042 CACGTGATTACTCAG CAAAAAGCCTCGA CTCT TCGAGGCTTTTTG TTATCTTGTGTTGAC TERM 2944 2542042 - 2542059 + F 100 -11.3 -5.31072 | opp_overlap 2542042, overlap 2542036 ATTACTCAGCAAAAA GCCTCGA CTCT TCGAGGC TTTTTGTTATCTTGT TERM 2945 2542059 - 2542042 - f 100 -11.3 -4.75372 | opp_overlap 2542036 2542042 ATTACTCAGCAAAAA GCCTCGA CTCT TCGAGGC TTTTTGTTATCTTGT AHA_2299 2542128 - 2542616 + | hypothetical protein TERM 2946 2544557 - 2544570 + G 71 -9.5 -3.78775 | CTGGCCGACGAGGAT CGGGC GCTC GCCCG TTTCCTGCTGAGCGA AHA_2300 2542709 - 2545108 + | copper-translocating P-type ATPase TERM 2947 2545169 - 2545131 - f 84 -13.3 -3.01912 | gap 2 CCACAGGGACAGACA GGGTGAAGGGAG-CTG-GC TCC GCTCAGGCTCCCTTCACCA TCGAATCGACGGGTC ccoS 2545237 - 2545428 + | cytochrome oxidase maturation protein, cbb3-type AHA_2302 2545412 - 2546098 + | integral membrane protein TERM 2948 2546230 - 2546185 - g 76 -5.6 -4.65263 | opp_overlap 2546198 ATCCCGGAAAAGAAA CCTGGCAGACGTATT-CAGAGC GGTG GCTGTGCAATTCAT-TGCCAGG ATTGCAGCATCAGCC fnr 2546167 - 2546922 + | fumarate/nitrate reduction transcriptional regulator AHA_2304 2547057 - 2548001 + | universal stress protein UspE TERM 2949 2548036 - 2548046 + F 75 -4 -4.84017 | opp_overlap 2548036, overlap 2548028 2548027 GGGACATGGCTATAA TAAG CCG CTTA TTTTTGTCCCGGGTT TERM 2950 2548118 - 2548099 - g 91 -5.8 -5.29846 | overlap 2548101 2548114 AACGCCAAAGAAAAA TACAGTTT CAAC AAACTGCA GAAGCGCCTGCGGCG TERM 2951 2548116 - 2548101 - g 71 -6.2 -4.27026 | overlap 2548099 2548114 CGCCAAAGAAAAATA CAGTTT CAAC AAACTG CAGAAGCGCCTGCGG AHA_2305 2548069 - 2548977 + | tRNA s2C32 biosynthesis protein TtcA TERM 2952 2549022 - 2548992 - T 86 -15.6 -2.73483 | opp_overlap 2548992 2548999, overlap 2548999 AGCCCACCTCAACCA TGAAAAAGGAGCGC CTG GCGCTCCTTTTTTA TTTTTATGCCGACCA TERM 2953 2548992 - 2549022 + T 100 -17.8 -4.82901 | opp_overlap 2548992 2548999, overlap 2548999 AGCCCACCTCAACCA TGAAAAAGGAGCGC CTG GCGCTCCTTTTTTA TTTTTATGCCGACCA TERM 2954 2548999 - 2549015 + T 100 -13.7 -5.98675 | opp_overlap 2548992 2548999, overlap 2548992 CTCAACCATGAAAAA GGAGCGC CTG GCGCTCC TTTTTTATTTTTATG TERM 2955 2549015 - 2548999 - T 100 -13.7 -4.81083 | opp_overlap 2548999 2548992, overlap 2548992 CTCAACCATGAAAAA GGAGCGC CTG GCGCTCC TTTTTTATTTTTATG AHA_2306 2549739 - 2549062 - | hypothetical protein TERM 2956 2549550 - 2549569 + g 75 -4.2 -4.72497 | gap 1, overlap 2549553 2549556 AGACCCGGGCCGAGG TGAGCAGGC AGC GCCGGC-CA TTTTGTTGATCGGTC AHA_2307 2550575 - 2549811 - | hypothetical protein TERM 2957 2550619 - 2550633 + H 71 -4.2 -4.57073 | TATAGCGATTTGACC CGGC ATGCGTA GCCG TTTTTCCCGCGCGTC AHA_2308 2550817 - 2551434 + | glutathione S-transferase TERM 2958 2551446 - 2551472 + F 95 -11.6 -4.59853 | CTAGTCCGCTCGTTG CGGGTGCCAG TGCTCTT CTGGCACCTG TTTTTCCCCGCTTCC rbsD 2551640 - 2552059 + | cytoplasmic D-ribose-binding protein RbsD TERM 2959 2552041 - 2552053 + F 74 -6.9 -4.27316 | CAACCTCATTCTCTG CGCCG GCG TGGCG TTTTAAATTCCCAAG rbsA 2552093 - 2553610 + | D-ribose transporter ATP binding protein rbsC 2553607 - 2554572 + | ribose ABC transporter permease protein rbsB 2554594 - 2555469 + | D-ribose transporter subunit RbsB TERM 2960 2555477 - 2555496 + F 100 -15 -4.18762 | opp_overlap 2555470 GCAAGTAAGTTGACG GGGGGAGG TTCG CCTCCCCC TTTTCACTCAAGGTT TERM 2961 2556322 - 2556306 - g 74 -12.3 -3.53012 | overlap 2556279 2556319 GGTTTTCGGGTGAAA GCAGTGG ACA CCACTGC CGCGGGCGATACCTT rbsK 2555577 - 2556509 + | ribokinase AHA_2314 2556509 - 2557513 + | LacI family transcription regulator TERM 2962 2557540 - 2557572 + T 100 -14.2 -4.60797 | gap 1, opp_overlap 2557541 2557543, overlap 2557541 2557543 AATACCTGCAATAAA AGC-GCAAGGCGACC CTGG GGTCGCCTTGCTGCA TTTTGTCTCTGGCCG TERM 2963 2557571 - 2557541 - T 100 -17.7 -4.65078 | gap 1, opp_overlap 2557540 2557541 2557543, overlap 2557543 ATACCTGCAATAAAA GC-GCAAGGCGACC CTGG GGTCGCCTTGCTGC ATTTTGTCTCTGGCC TERM 2964 2557541 - 2557571 + T 100 -17.7 -3.35996 | gap 1, opp_overlap 2557541 2557543, overlap 2557540 2557543 ATACCTGCAATAAAA GC-GCAAGGCGACC CTGG GGTCGCCTTGCTGC ATTTTGTCTCTGGCC TERM 2965 2557543 - 2557568 + T 100 -19.1 -2.83846 | opp_overlap 2557543 2557541, overlap 2557541 2557540 ACCTGCAATAAAAGC GCAAGGCGACC CTGG GGTCGCCTTGC TGCATTTTGTCTCTG TERM 2966 2557568 - 2557543 - T 100 -19.1 -2.62512 | opp_overlap 2557541 2557540 2557543, overlap 2557541 ACCTGCAATAAAAGC GCAAGGCGACC CTGG GGTCGCCTTGC TGCATTTTGTCTCTG AHA_2315 2559261 - 2557609 - | GGDEF family protein, putative TERM 2967 2558948 - 2558981 + g 71 -9.5 -3.69323 | gap 1, overlap 2558949 AGTCCGGCCAGCGCT TTGCCGAGCCCGTGCC GCT GGCGC-GCCTCGGCGG TTTCGCTGCTGATGA AHA_2316 2559734 - 2559258 - | hypothetical protein AHA_2317 2560597 - 2559824 - | putative nicotinic acid mononucleotide:5, 6-dimethylbenzimidazole(DMB)phosphoribosyltransferase TERM 2968 2560057 - 2560032 - G 71 -9.6 -3.72576 | overlap 2560033 2560048 GCCTCGTGCACGAAA CCGGCCGCCG GATAGA CGGCGCCCGA GGTGCCGATGGAGAT TERM 2969 2560447 - 2560433 - G 84 -11.4 -4.11216 | GCGGGAGTTGTAAAA GCCCTG CAC CAGGGC GGGATCCCGTGCGTA AHA_2318 2561281 - 2560682 - | acetyltransferase AHA_2319 2562532 - 2561285 - | response regulator receiver domain-containing protein AHA_2320 2566457 - 2562534 - | PAS, putative TERM 2970 2563761 - 2563733 - G 70 -12.3 -3.21924 | overlap 2563731 CCACTCCGCACAACA GCTGGGAGCCAGC GCG GCGGGCCCACAGC ACCACCTCGCCACGG TERM 2971 2565010 - 2564984 - G 71 -13.7 -2.65442 | overlap 2565000 AGATCAGCCAGATGA CGCCGGCACTG ATCAA CAGCGCCAGCG ACACCGACCCCAGCC TERM 2972 2566482 - 2566501 + r 77 -4.2 -4.91109 | opp_overlap 2566482, overlap 2566485 TGGCGCAGCCAGCAA CAGGCCTA ACAA TAGGCTGG TTTTTCTCATGAAAA TERM 2973 2566546 - 2566519 - R 100 -12.8 -5.14563 | opp_overlap 2566524, overlap 2566524 TTTCTCATGAAAAAA TAAAAGCCAGGC GGTT GCCTGGCTTTTT GTCACTCGTTGGGCT TERM 2974 2566524 - 2566541 + r 100 -12.7 -4.89339 | opp_overlap 2566519 2566524 CATGAAAAAATAAAA GCCAGGC GGTT GCCTGGC TTTTTGTCACTCGTT TERM 2975 2566541 - 2566524 - R 100 -12.7 -5.45813 | opp_overlap 2566524, overlap 2566519 CATGAAAAAATAAAA GCCAGGC GGTT GCCTGGC TTTTTGTCACTCGTT ihfA 2566844 - 2566548 - | integration host factor, alpha subunit pheT 2569244 - 2566848 - | phenylalanyl-tRNA synthetase, beta subunit pheS 2570240 - 2569257 - | phenylalanyl-tRNA synthetase, alpha subunit TERM 2976 2570342 - 2570315 - R 100 -4.1 -5.86465 | opp_overlap 2570315 AATAATACAAAAAAA GCCCCTTCACT GACCAT AGTTAAGGTGC CCTTTTCTCCCTAGA TERM 2977 2570387 - 2570397 + r 74 -8.2 -4.01047 | opp_overlap 2570378 2570375 CAAGTAGGGCTTCGA GCCG GAC CGGC TTCTTCTTCGTGATT TERM 2978 2570516 - 2570531 + r 90 -10.4 -4.26189 | opp_overlap 2570516 ACAGACAACAAAAAA GGAGGC CTAG GCCTCC TTTTAGCATTTATAA TERM 2979 2570531 - 2570516 - R 100 -10.4 -5.62045 | opp_overlap 2570516 ACAGACAACAAAAAA GGAGGC CTAG GCCTCC TTTTAGCATTTATAA rplT 2570913 - 2570557 - | ribosomal protein L20 rpmI 2571126 - 2570929 - | ribosomal protein L35 TERM 2980 2571168 - 2571158 - R 81 -6.8 -4.79352 | overlap 2571159 TGAGTGACAACAAAA TCGC AAG GCGA ACCGACTCATGGGAC TERM 2981 2571170 - 2571199 + r 71 -6.4 -4.31835 | opp_overlap 2571159 2571174, overlap 2571171 2571172 2571174 AAATCGCAAGGCGAA CCGACTCATGGG ACCAGC CCCATGAGTCAA TTTCTTGTGGGCCTT TERM 2982 2571172 - 2571197 + r 78 -13.4 -2.50545 | opp_overlap 2571159 2571174, overlap 2571171 2571170 2571174 ATCGCAAGGCGAACC GACTCATGGG ACCAGC CCCATGAGTC AATTTCTTGTGGGCC infC 2571620 - 2571213 - | translation initiation factor IF-3 thrS 2573693 - 2571765 - | threonyl-tRNA synthetase AHA_2328 2574583 - 2573930 - | TPR repeat-containing protein AHA_2329 2574692 - 2575750 + | radical SAM domain-containing protein TERM 2983 2576232 - 2576213 - T 100 -15 -4.43477 | opp_overlap 2576213 GCGAGCCAATGAAAA GAGCGGCC ATGA GGCCGCTC TTTGGTATCGGGTAA TERM 2984 2576213 - 2576232 + T 100 -15 -3.83998 | opp_overlap 2576213 GCGAGCCAATGAAAA GAGCGGCC ATGA GGCCGCTC TTTGGTATCGGGTAA gyrA 2579005 - 2576258 - | DNA gyrase, A subunit ubiG 2579156 - 2579923 + | ubiquinone biosynthesis O-methyltransferase gph-1 2579923 - 2580609 + | phosphoglycolate phosphatase TERM 2985 2580683 - 2580672 - f 71 -5.8 -4.34488 | overlap 2580668 2580674 GAGATGGATAACAAA GGCA GCTT TGCC GTCAAAGGGTGGCCA TERM 2986 2580744 - 2580767 + F 100 -13.9 -4.17089 | CCTTGGCAGTGACCA CGGGGGATC CCCAGC GATCCCCCG TTTTGGCGGTTTGAC nrdA 2581152 - 2583455 + | ribonucleotide-diphosphate reductase subunit alpha TERM 2987 2583488 - 2583460 - f 74 -11.6 -3.18735 | opp_overlap 2583459 2583457 2583462, overlap 2583461 GCAAGATCTGATGAA CCGGGCGGGAGC ATGAA GCTCCCGCCCTC CTGTTTCCCCTTATT TERM 2988 2583487 - 2583461 - f 83 -15.1 -2.5092 | opp_overlap 2583459 2583457 2583462, overlap 2583460 CAAGATCTGATGAAC CGGGCGGGAGC ATGAA GCTCCCGCCCT CCTGTTTCCCCTTAT TERM 2989 2583462 - 2583486 + F 100 -18.6 -2.86011 | opp_overlap 2583461 2583460, overlap 2583459 2583457 AAGATCTGATGAACC GGGCGGGAGC ATGAA GCTCCCGCCC TCCTGTTTCCCCTTA nrdB 2583522 - 2584655 + | ribonucleotide-diphosphate reductase subunit beta AHA_2335 2584727 - 2584972 + | iron-sulfur cluster-binding protein TERM 2990 2585025 - 2585004 - T 100 -17.3 -5.33405 | opp_overlap 2585004 GTCAGCAAACAAAAA GCCGCCGGA TTGC TCCGGCGGC TTTTTTACATCCATC TERM 2991 2585004 - 2585025 + T 100 -17.3 -5.09895 | opp_overlap 2585004 GTCAGCAAACAAAAA GCCGCCGGA TTGC TCCGGCGGC TTTTTTACATCCATC mltA 2586242 - 2585091 - | murein transglycosylase A AHA_2337 2586393 - 2586644 + | MutT/nudix family protein TERM 2992 2586629 - 2586653 + T 81 -8.5 -4.35693 | opp_overlap 2586628, overlap 2586614 2586613 2586630 GCAGCCAGAGCAACC TGGCTGGGATT TTT AAACCCAGCCC TTCTTTTATCCCTTT TERM 2993 2586630 - 2586652 + T 78 -12 -3.19789 | opp_overlap 2586628, overlap 2586614 2586613 2586629 CAGCCAGAGCAACCT GGCTGGGATT TTT AAACCCAGCC CTTCTTTTATCCCTT AHA_2338 2587826 - 2586669 - | mannose-6-phosphate isomerase TERM 2994 2587861 - 2587881 + r 72 -11.1 -3.02649 | opp_overlap 2587862 ACCCAGCCCATAAAA AGGGAGAGC CCT GCTCTCCCC TGTCTGTGCTCACCT TERM 2995 2587880 - 2587862 - R 100 -14.6 -4.85599 | opp_overlap 2587861 CCCAGCCCATAAAAA GGGAGAGC CCT GCTCTCCC CTGTCTGTGCTCACC AHA_2339 2588760 - 2587912 - | fructose permease IID component AHA_2340 2589563 - 2588760 - | PTS system, fructose(mannose)-specific IIC AHA_2341 2590070 - 2589576 - | pts system mannose-specific eiiab component (eiiab-man) AHA_2342 2590511 - 2590080 - | PTS system mannose/fructose/sorbose family IIA subunit AHA_2343 2592283 - 2590517 - | hypothetical protein TERM 2996 2591578 - 2591552 - G 70 -10 -3.61398 | overlap 2591567 2591568 CCCGGGGTCGAAGAA GGGCACCACCCG AAA CGGCTGGCGCGC CGCCTGATGCAACCC TERM 2997 2591962 - 2591945 - G 77 -2.6 -5.00616 | overlap 2591947 GGCCGGGTCAAAAAA CTCCAC CATCTT GTGGGG GGCCAGCACGCCAAA TERM 2998 2593431 - 2593399 - g 76 -9 -4.09243 | GAGATCGGCCGAAAA GCCGGCGAGCTGCT GCTTG AGCGGATGGCCGGC AACGACGAACCCGCC malI-2 2592505 - 2593503 + | maltose regulon regulatory protein MalI AHA_2345 2594094 - 2593525 - | glucose-6-phosphate isomerase TERM 2999 2594251 - 2594236 - R 100 -11.8 -5.4505 | opp_overlap 2594234 2594232 2594236 GTGGGCAATAAAAAA GCGGCC CAAA GGCCGC TCTCTTGTATGGCGT TERM 3000 2594236 - 2594251 + r 78 -11.8 -3.22886 | opp_overlap 2594236, overlap 2594234 2594232 GTGGGCAATAAAAAA GCGGCC CAAA GGCCGC TCTCTTGTATGGCGT fruA 2596007 - 2594283 - | PTS system, fructose-specific, IIBC component TERM 3001 2595378 - 2595388 + g 74 -4.6 -4.63218 | overlap 2595368 CCACGCCTTGTCGAG CTCG GCA CGGG TTTTCTTGAGCGCCG AHA_2347 2596993 - 2596004 - | 1-phosphofructokinase AHA_2348 2598093 - 2596993 - | bifunctional fructose-specific PTS IIA/HPr protein TERM 3002 2598197 - 2598211 + H 76 -5.6 -4.82901 | overlap 2598198 GGATTGCATCCCTTC GCGGGT CAT ACCCGG TTTTTATGCCCGGCC TERM 3003 2598745 - 2598726 - g 84 -8.6 -4.44608 | gap 1, opp_overlap 2598741, overlap 2598723 GCCACCGAAAAAGAA CTGGCCGAG ATG CT-GGCCAG CCGCCACGTGGATGC fruR 2598402 - 2599385 + | DNA-binding transcriptional regulator FruR TERM 3004 2599400 - 2599431 + F 100 -23.1 -5.02074 | ATCCTCTCTGCATCG CGCGCCGCTGCGA CCAGGT TCGCAGCGGCGCG TTTTTTCACCAGTCA TERM 3005 2599655 - 2599669 + F 85 -11.4 -3.97636 | CACCTCATATGCCTG CTGCGC ACG GCGCAG TTTCTCGATTCGGAT TERM 3006 2600018 - 2600063 + G 86 -15.4 -3.64184 | gap 1, opp_overlap 2599987 GCTGGCCCAGGCGCT GGCCGATGCCGGCCTGCCCCT CAGCC AGGAGCAGGC-GGCCTGGGCC TTTACCCTGCTGTTT AHA_2350 2599692 - 2600885 + | tyrosine-specific transport protein TERM 3007 2600960 - 2600920 - f 100 -16.9 -4.4261 | opp_overlap 2600928, overlap 2600922 2600928 GTCCCAATAGCAAAA GCGCAAAAGCCCCGCCAAC CCA GTTGGCGGGGCTTTTTCTA TGCCATCGGTATATG TERM 3008 2600958 - 2600922 - f 100 -23.9 -2.54568 | opp_overlap 2600928, overlap 2600920 2600928 CCCAATAGCAAAAGC GCAAAAGCCCCGCCAAC CCA GTTGGCGGGGCTTTTTC TATGCCATCGGTATA TERM 3009 2600928 - 2600952 + F 100 -21.5 -4.9792 | opp_overlap 2600922 2600920 2600928 AGCAAAAGCGCAAAA GCCCCGCCAAC CCA GTTGGCGGGGC TTTTTCTATGCCATC TERM 3010 2600952 - 2600928 - f 100 -21.5 -4.28651 | opp_overlap 2600928, overlap 2600922 2600920 AGCAAAAGCGCAAAA GCCCCGCCAAC CCA GTTGGCGGGGC TTTTTCTATGCCATC AHA_2351 2601147 - 2601551 + | hypothetical protein AHA_2352 2601551 - 2602240 + | hypothetical protein TERM 3011 2602310 - 2602280 - T 95 -18.4 -2.87564 | opp_overlap 2602285, overlap 2602285 CGATTCCCGGATATA GAAAAGCCCCGCCA GAG TGGCGGGGCTTTTT ACATCAACCGAGCGA TERM 3012 2602285 - 2602305 + T 100 -18.3 -4.65895 | opp_overlap 2602280 2602285 CCCGGATATAGAAAA GCCCCGCCA GAG TGGCGGGGC TTTTTACATCAACCG TERM 3013 2602305 - 2602285 - T 100 -18.3 -4.60797 | opp_overlap 2602285, overlap 2602280 CCCGGATATAGAAAA GCCCCGCCA GAG TGGCGGGGC TTTTTACATCAACCG AHA_2353 2603747 - 2602347 - | putative ATP-dependent RNA helicase RhlE TERM 3014 2602934 - 2602947 + g 71 -9.5 -3.7941 | TGCCGTGGATGGCGG CGGCG CTGA CGCCG TTCTTGTCGAGGGTC TERM 3015 2604040 - 2604027 - H 71 -9.5 -3.50393 | opp_overlap 2604020 CTTGATGCCAGATAA CGGCG ATAC CGCCG CATCCGTCCTGTACA AHA_2354 2604071 - 2604886 + | extracellular solute-binding protein TERM 3016 2604914 - 2604931 + T 100 -12.7 -4.27259 | opp_overlap 2604914 AAGGCCCATGAAAAA GGCGACC CTGA GGTCGCC TTTTGACTGTGTCTG TERM 3017 2604931 - 2604914 - T 100 -12.7 -4.73388 | opp_overlap 2604914 AAGGCCCATGAAAAA GGCGACC CTGA GGTCGCC TTTTGACTGTGTCTG aroC 2606075 - 2604987 - | chorismate synthase TERM 3018 2605631 - 2605647 + g 73 -10.9 -3.63694 | TGATCTCGATGCCGT GTACCTG TTT CAGGTAC TTCTTGGCAATGGCT AHA_2356 2607023 - 2606088 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase AHA_2357 2607089 - 2607613 + | Smr/MutS family protein TERM 3019 2607696 - 2607655 - T 90 -17.6 -2.62983 | opp_overlap 2607666, overlap 2607666 CGCACGTCCAGAGCA GCATAAAAAAACCACCGC GACCTG GCGGTGGTTTTTTTATGG GCGCAGGCGCCTCCC TERM 3020 2607685 - 2607666 - T 100 -10.7 -5.67967 | opp_overlap 2607666, overlap 2607655 AGCAGCATAAAAAAA CCACCGC GACCTG GCGGTGG TTTTTTTATGGGCGC TERM 3021 2607666 - 2607685 + T 100 -10.7 -5.60993 | opp_overlap 2607655 2607666 AGCAGCATAAAAAAA CCACCGC GACCTG GCGGTGG TTTTTTTATGGGCGC AHA_2358 2608122 - 2607712 - | hypothetical protein AHA_2359 2608344 - 2609639 + | sensory box protein AHA_2360 2610322 - 2609693 - | phosphoglycerate mutase TERM 3022 2609758 - 2609742 - G 74 -5.7 -4.41348 | overlap 2609706 2609743 GGCCGGGCAAAGAAA CCCGGCG GCC CGCCAGC GTCGCCACATGCAAG TERM 3023 2610274 - 2610291 + g 70 -10.5 -3.57144 | CCCCCTGATAGCGCT CCTCGGC ATTG GCCGGGG TTTGCCCGTGGCGCA AHA_2361 2610770 - 2610372 - | hypothetical protein TERM 3024 2610918 - 2610891 - R 75 -6.8 -4.46212 | overlap 2610893 GCCCCCATCACAAAA CCGGCTGCGGGA TGGC TCACGAGGCCGG CAGCCAGCGCTCCTG AHA_2362 2611287 - 2610907 - | glyoxalase family protein TERM 3025 2611685 - 2611664 - R 91 -11.6 -4.28254 | GCCGAATATCGAAAA GGGGGACA ACAATA TGTCCCCC GACTTGGCAAGAGAG AHA_2363 2613191 - 2611743 - | carbohydrate binding domain-containing protein TERM 3026 2612849 - 2612833 - G 95 -10.1 -4.57073 | TATTCGCCGCAAAAA GCCGGGA ATT TCCCGAC CGCCCGCAAGAAGCG TERM 3027 2613427 - 2613395 - R 78 -2.6 -5.16151 | opp_overlap 2613403, overlap 2613403 TAAACCGAAGAAAAA TGAGAAAAGAGCGG TCACG CCGCTCTTTCAACG ACACGATCGCCTCAA TERM 3028 2613403 - 2613419 + r 71 -10.1 -3.53091 | opp_overlap 2613395 2613403 AGAAAAATGAGAAAA GAGCGGT CAC GCCGCTC TTTCAACGACACGAT TERM 3029 2613419 - 2613403 - R 93 -9.4 -4.73912 | opp_overlap 2613403, overlap 2613395 AGAAAAATGAGAAAA GAGCGG TCACG CCGCTC TTTCAACGACACGAT AHA_2364 2614737 - 2613508 - | hypothetical protein TERM 3030 2614915 - 2614935 + G 78 -10.4 -4.08767 | GCCCCTTCATTATCT TGGCCTGC CCATC GCGGGCCA TTTTACCAACGTGAA AHA_2365 2614888 - 2615541 + | PhnA protein TERM 3031 2615566 - 2615581 + F 100 -11.8 -5.28176 | opp_overlap 2615566 2615564 GCCCTGCTAGCAAGA GCGCCC CACG GGGCGC TTTTTTGTGCCTGCC TERM 3032 2615581 - 2615566 - f 76 -11.8 -3.13403 | opp_overlap 2615566, overlap 2615564 GCCCTGCTAGCAAGA GCGCCC CACG GGGCGC TTTTTTGTGCCTGCC AHA_2366 2615783 - 2615890 + | hypothetical protein TERM 3033 2615894 - 2615879 - f 84 -6.1 -5.11937 | AAGAAGCTGAAAAAA GCCCT GAAATA AGGGC CGGCAGAACAAAAAA TERM 3034 2615930 - 2615903 - f 74 -11.4 -3.29461 | opp_overlap 2615910, overlap 2615910 TAAGGGCCGGCAGAA CAAAAAACCGCC TGAT GGCGGTTTTTTT GTGGCGATATCAGTC TERM 3035 2615910 - 2615923 + F 100 -9.5 -5.61596 | opp_overlap 2615910 2615903 CGGCAGAACAAAAAA CCGCC TGAT GGCGG TTTTTTTGTGGCGAT TERM 3036 2615923 - 2615910 - f 100 -9.5 -5.55769 | opp_overlap 2615910, overlap 2615903 CGGCAGAACAAAAAA CCGCC TGAT GGCGG TTTTTTTGTGGCGAT AHA_2367 2616212 - 2617489 + | hypothetical protein TERM 3037 2617519 - 2617550 + T 74 -10.2 -3.49475 | opp_overlap 2617520 2617528, overlap 2617520 2617528 TTTGCCCCGACATAA AGTAAAAAACCGCC AGCT GGCGGTTTTTTTCA TTGTCTGACGATCAC TERM 3038 2617520 - 2617549 + T 78 -13.7 -2.69471 | opp_overlap 2617520 2617528, overlap 2617519 2617528 TTGCCCCGACATAAA GTAAAAAACCGCC AGCT GGCGGTTTTTTTC ATTGTCTGACGATCA TERM 3039 2617549 - 2617520 - T 100 -13.7 -4.03234 | opp_overlap 2617519 2617520 2617528, overlap 2617528 TTGCCCCGACATAAA GTAAAAAACCGCC AGCT GGCGGTTTTTTTC ATTGTCTGACGATCA TERM 3040 2617528 - 2617541 + T 100 -9.5 -5.69379 | opp_overlap 2617528 2617520, overlap 2617520 2617519 ACATAAAGTAAAAAA CCGCC AGCT GGCGG TTTTTTTCATTGTCT TERM 3041 2617541 - 2617528 - T 100 -9.5 -5.4387 | opp_overlap 2617520 2617519 2617528, overlap 2617520 ACATAAAGTAAAAAA CCGCC AGCT GGCGG TTTTTTTCATTGTCT AHA_2368 2618449 - 2617562 - | putative phenazine biosynthesis protein PhzF TERM 3042 2618900 - 2618883 - R 100 -14.1 -4.84311 | TCGCAGACAACAAAA GCGCGGC TCTG GCCGCGC GTTGAACGTTCCGGG AHA_2369 2619760 - 2618930 - | hypothetical protein AHA_2370 2620266 - 2619757 - | Vco28 AHA_2371 2620804 - 2620319 - | putative acetyltransferase AHA_2372 2621483 - 2620872 - | ThiJ/pfpI family protein TERM 3043 2621450 - 2621437 - G 93 -3.1 -5.5353 | TACATCAAGAAAAAA TCCAC ATCG GTGAA ATCATCAAATAAAAC def 2622048 - 2621548 - | peptide deformylase AHA_2374 2622530 - 2622075 - | histone acetyltransferase HPA2 TERM 3044 2622829 - 2622807 - R 86 -9.8 -4.32034 | opp_overlap 2622807 GGAGCATGAGTAAAA GCCGGGCC AGCCGTG GGCCCGAC TAATTTAGGCGTGGC AHA_2375 2623259 - 2622834 - | antibiotic biosynthesis monooxygenase family protein TERM 3045 2622879 - 2622863 - G 74 -2.1 -4.82901 | overlap 2622864 2622866 CCTCCTCCATAAAAA TCAGCCG CAG CGGCTCT GCCAGCAGTGCCTCC AHA_2376 2623666 - 2623289 - | RplA family protein TERM 3046 2623732 - 2623786 + r 71 -11.3 -2.90992 | gap 2, opp_overlap 2623732 2623753, overlap 2623755 GTCGATGCCAATGAA GCGGTAGCGGGCGTGAGCGAACCGGCG TGG TGCCGGCCTGC-CATGGCCGC-GCCGC TACTTTGCCACAGTT TERM 3047 2623836 - 2623808 - R 100 -16.1 -3.56643 | opp_overlap 2623813, overlap 2623813 GCCACAGTTTCCAAA CAAAACGGGAGGC CAA GCCTCCCGTTTTC ATACCTCGTCCGTCA TERM 3048 2623813 - 2623831 + r 100 -16 -4.28994 | opp_overlap 2623813 2623808 AGTTTCCAAACAAAA CGGGAGGC CAA GCCTCCCG TTTTCATACCTCGTC TERM 3049 2623831 - 2623813 - R 100 -16 -4.87133 | opp_overlap 2623813, overlap 2623808 AGTTTCCAAACAAAA CGGGAGGC CAA GCCTCCCG TTTTCATACCTCGTC mukB 2628286 - 2623859 - | cell division protein MukB TERM 3050 2625161 - 2625196 + g 77 -13.2 -3.60098 | GGTCAGCCCCATGGC CGCCAGCTCCTGCTCG AACT CGGTCAGGGTCTGGCG TTTGGCCTCGACGCT TERM 3051 2625488 - 2625526 + g 78 -6.6 -4.57341 | overlap 2625496 2625498 CAGCGCGGCCAGATC CTGCGGATCCTGGCGCAG CAC CTGCACCATGGTTTCCAG TTTTTCCAGCGCCTT TERM 3052 2626441 - 2626460 + g 76 -9.2 -4.10453 | GCGGCAGACCGCTCT GCTCGCGC AGCT GCTCGAGC TTTTCAAAGGATTTG TERM 3053 2626652 - 2626701 + g 90 -15.2 -3.79565 | gap 3, opp_overlap 2626648 2626682, overlap 2626675 2626676 2626677 GCTGGCGATAAGCTG GCCAG-AGGC-CTGCTGCAGCTCGT CAC GCAAGC-GCAGCAGCGCCTGCTGGC TTTCGCTCTCTTTCT TERM 3054 2626864 - 2626849 - G 76 -8.2 -4.11216 | opp_overlap 2626849 GGGCGATGCTCAAAA GCAGCG CCAG CGCCGC TTCGTGCTCGGCCAC AHA_2378 2629051 - 2628314 - | condesin subunit E AHA_2379 2630351 - 2629032 - | condesin subunit F TERM 3055 2630434 - 2630422 - R 79 -3.3 -5.1861 | GGTAGCATCAAAAAA GGTGG CCT CAACC GGTGGTTTTTTGCGC AHA_2380 2631205 - 2630429 - | SmtA protein TERM 3056 2630494 - 2630483 - G 70 -7.2 -4.0641 | CCCCAGGGAGATAAA CGGC TCCT GCCG GCAATATTGCAGCTC TERM 3057 2630843 - 2630810 - G 76 -13.9 -3.22068 | gap 1, opp_overlap 2630839, overlap 2630798 2630802 GAACAGACCGAGCAA GGT-CTGGCGCGGCTC GGC GAGCCACTCCAGCACC GCGTGACAGAGCACC AHA_2381 2631496 - 2632275 + | integral membrane protein tpiA-1 2632411 - 2633166 + | triosephosphate isomerase pfkA 2633314 - 2634285 + | 6-phosphofructokinase TERM 3058 2634314 - 2634330 + F 100 -13.7 -5.4505 | opp_overlap 2634314 GTTGCTGTGACAAAA GCCCTCC ACT GGAGGGC TTTTTTATTGAGCCC TERM 3059 2634330 - 2634314 - f 100 -13.7 -4.36914 | opp_overlap 2634314 GTTGCTGTGACAAAA GCCCTCC ACT GGAGGGC TTTTTTATTGAGCCC TERM 3060 2635377 - 2635412 + F 100 -22.8 -3.70902 | gap 1, opp_overlap 2635385, overlap 2635400 CTGTCAGAGGTAGCC TGTCAACAGGGGGAGCC AGT GGCTCCCCCTGTTG-CA TTTGCGTCTGCGGGA TERM 3061 2635405 - 2635385 - f 100 -18.3 -3.02511 | opp_overlap 2635377 2635400 GGTAGCCTGTCAACA GGGGGAGCC AGT GGCTCCCCC TGTTGCATTTGCGTC TERM 3062 2636558 - 2636575 + G 71 -8.3 -3.96148 | ACCCGCCGTTTCGGC GCCAGCG AGGA CGCGGGC TTTCTCATCGAACGG AHA_2384 2635487 - 2636743 + | M20D family peptidase TERM 3063 2636762 - 2636785 + T 100 -16.8 -5.41746 | opp_overlap 2636762 2636765 ACAGCCGGATACAAA CAAGGCAGCC CGTG GGCTGCCTTG TTTTTTTCACCCCTT TERM 3064 2636785 - 2636762 - T 100 -16.8 -4.04474 | opp_overlap 2636762, overlap 2636765 ACAGCCGGATACAAA CAAGGCAGCC CGTG GGCTGCCTTG TTTTTTTCACCCCTT TERM 3065 2636782 - 2636765 - T 95 -12.7 -4.14627 | opp_overlap 2636762, overlap 2636762 GCCGGATACAAACAA GGCAGCC CGTG GGCTGCC TTGTTTTTTTCACCC AHA_2385 2637505 - 2636825 - | HAD-superfamily (subfamily IA) hydrolase AHA_2386 2639010 - 2637514 - | cytosol aminopeptidase TERM 3066 2640538 - 2640527 - H 93 -4.4 -5.46629 | AATATCCTAAAAAAA CTTC ATTC GAAG ATTAAACCGGCACAA TERM 3067 2642190 - 2642151 - g 80 -5.6 -4.74103 | GCGGCAAGCCAAAAA CATGATGGTGGCCACC CTGCTCTC GGTGGGCTCCCCCATG CTGCTGATGGGGGAC glgX-1 2640664 - 2642727 + | glycogen debranching enzyme GlgX TERM 3068 2642752 - 2642777 + T 100 -21.9 -3.96148 | opp_overlap 2642752 TGCGGCCAGCAAAAA GCCCACCCCGG GCAA CCGGGGTGGGC TTTGTCATGACGCCA TERM 3069 2642777 - 2642752 - T 100 -21.9 -4.72272 | opp_overlap 2642752 TGCGGCCAGCAAAAA GCCCACCCCGG GCAA CCGGGGTGGGC TTTGTCATGACGCCA AHA_2396 2643517 - 2642798 - | hypothetical protein AHA_2397 2645364 - 2643727 - | homology with RecF protein AHA_2398 2646513 - 2645626 - | helix-turn-helix, AraC type AHA_2399 2646549 - 2647592 + | membrane protein AHA_2400 2647650 - 2648504 + | LysR family transcriptional regulator TERM 3070 2648551 - 2648514 - T 100 -20.8 -3.44229 | gap 1, opp_overlap 2648519, overlap 2648519 AGCTGAGCATCACAA CAC-AAGGGGCCCGATC TTGCG GATCGGGCCCCTTTGTG TAGACAGCCATGACT TERM 3071 2648519 - 2648545 + T 100 -20.2 -4.03234 | opp_overlap 2648514 2648519 AGCATCACAACACAA GGGGCCCGATCT TGC GGATCGGGCCCC TTTGTGTAGACAGCC TERM 3072 2648545 - 2648519 - T 100 -19.5 -3.7821 | opp_overlap 2648519, overlap 2648514 AGCATCACAACACAA GGGGCCCGATC TTGCG GATCGGGCCCC TTTGTGTAGACAGCC AHA_2401 2649367 - 2648588 - | hypothetical protein TERM 3073 2648912 - 2648894 - G 77 -2.2 -5.05782 | overlap 2648898 ACCGATGGCAAAAAA CGATCCCG TGC CCGGTCCG AAGAAGCCGTCATAG TERM 3074 2649214 - 2649204 - G 73 -6.8 -4.24963 | opp_overlap 2649203 2649204, overlap 2649195 2649205 GAGAAGGAGCCAAAA CTGC TCT GCAG CTTGTTGGTGCCGAG AHA_2402 2650336 - 2649575 - | DTW protein AHA_2403 2650504 - 2650917 + | 27 kDa antigen Cfp30B TERM 3075 2650964 - 2650936 - T 83 -11.8 -3.65046 | gap 1, opp_overlap 2650941, overlap 2650941 2650943 CGCCCACCGCAACAA CGACAGAGGGGCC CGCA GGCCCCTCT-TCA TCATTCAGCTCACCC TERM 3076 2650960 - 2650941 - T 91 -15 -3.02013 | opp_overlap 2650941, overlap 2650936 2650943 ACCGCAACAACGACA GAGGGGCC CGCA GGCCCCTC TTCATCATTCAGCTC TERM 3077 2650941 - 2650960 + T 95 -15 -3.27774 | opp_overlap 2650936 2650941 2650943 ACCGCAACAACGACA GAGGGGCC CGCA GGCCCCTC TTCATCATTCAGCTC TERM 3078 2650958 - 2650943 - T 76 -11.8 -3.06171 | opp_overlap 2650941, overlap 2650941 2650936 CGCAACAACGACAGA GGGGCC CGCA GGCCCC TCTTCATCATTCAGC ddl 2651985 - 2650996 - | D-alanyl-alanine synthetase A TERM 3079 2651382 - 2651394 + g 76 -6.2 -4.67353 | CCACTTCCAGCTCGC GCGG CTTGA CCGC TTTTTCGATCAGTAC TERM 3080 2652143 - 2652104 - R 100 -18 -3.30006 | gap 1 AGCAAGGGAGATCAA GCC-TTGTCAGCCGATGGG AGC CCCATCCGCCGACAACGGC CATAAAAATTCCCGC AHA_2405 2652881 - 2652186 - | SM-20 domain-containing protein AHA_2406 2653082 - 2653558 + | peroxiredoxin HYR1 TERM 3081 2654530 - 2654513 - g 75 -4.1 -4.7173 | CAGCAGATGCAAAAA GACGG GCTCGATA CCGTC GCCATCCACGGCGAC TERM 3082 2654941 - 2654896 - g 79 -8.2 -4.386 | gap 1, overlap 2654897 CAAGCCGGTACAAAA TCCGCCGCGCGCCCGTGGC GCCGCCAAT GCCAAGGGCG-GCAACGGC AAATCCGCCGCAGGC TERM 3083 2654940 - 2654897 - g 70 -11.7 -3.22678 | gap 1, overlap 2654896 AAGCCGGTACAAAAT CCGCCGCGCGCCCGTGGC GCCGCCAAT GCCAAGGGCG-GCAACGG CAAATCCGCCGCAGG AHA_2407 2653718 - 2655103 + | putative ATP-dependent RNA helicase RhlE TERM 3084 2655155 - 2655128 - T 74 -11.4 -3.29511 | opp_overlap 2655135, overlap 2655135 CTGATCCCGTCATAA CAAAAAACCGCC CAAG GGCGGTTTTTTT CATGATGGCGCCACC TERM 3085 2655148 - 2655135 - T 100 -9.5 -5.55769 | opp_overlap 2655135, overlap 2655128 CGTCATAACAAAAAA CCGCC CAAG GGCGG TTTTTTTCATGATGG TERM 3086 2655135 - 2655148 + T 100 -9.5 -5.55664 | opp_overlap 2655128 2655135 CGTCATAACAAAAAA CCGCC CAAG GGCGG TTTTTTTCATGATGG AHA_2408 2655619 - 2655155 - | GMP synthase (glutamine-hydrolyzing) TERM 3087 2655570 - 2655540 - G 93 -8.3 -5.02074 | overlap 2655541 2655542 TCATCCGGCAAAAAA TGGTGGGTGGCG-CG CAC CGACGCCTCCCAC-A GCGCGATCAGGGCCT TERM 3088 2655570 - 2655541 - G 70 -9.9 -3.60762 | gap 1, overlap 2655540 2655542 CATCCGGCAAAAAAT GGTGGGTGGCG-CG CAC CGACGCCTCCCACA GCGCGATCAGGGCCT TERM 3089 2655569 - 2655542 - G 72 -13.4 -2.75975 | gap 1, overlap 2655540 2655541 ATCCGGCAAAAAATG GTGGGTGGCG-CG CAC CGACGCCTCCCAC AGCGCGATCAGGGCC AHA_2409 2656128 - 2655637 - | acetyltransferase AHA_2410 2656494 - 2656162 - | hypothetical protein TERM 3090 2656672 - 2656622 - R 87 -13.4 -3.17723 | gap 3, opp_overlap 2656629 2656629, overlap 2656596 GGATGGCGAATGCAA CGC-G-CAGC-CGGCCTTCCCCCGC CAGC ACGGGGGAAGGCCGAGTTATCAGCG GGTCTTGACCGCCTG TERM 3091 2656629 - 2656662 + r 100 -19.6 -2.57683 | opp_overlap 2656596 2656622, overlap 2656629 GAATGCAACGCGCAG CCGGCCTTCCCCCG CCAGCA CGGGGGAAGGCCGA GTTATCAGCGGGTCT TERM 3092 2656629 - 2656663 + r 100 -19.4 -3.30007 | gap 1, opp_overlap 2656596 2656622, overlap 2656629 GAATGCAACGCGCAG C-CGGCCTTCCCCCG CCAGCA CGGGGGAAGGCCGAG TTATCAGCGGGTCTT AHA_2411 2657512 - 2656667 - | hypothetical protein TERM 3093 2657568 - 2657541 - H 95 -14.1 -3.27525 | overlap 2657536 TCTTGCCAAAGCGAA GGCAGCGGCCC GGCACG GGGCGGCTGCC GCAAACGTGGCGAGG AHA_2412 2657869 - 2658441 + | adenylate cyclase AHA_2413 2658399 - 2658830 + | nudix family protein, MutT subfamily AHA_2414 2659000 - 2659506 + | acetyltransferase TERM 3094 2659568 - 2659591 + G 86 -16 -3.17723 | ACTCTGTAGCCACAG TGCGCCCTCC CCAT GGAGGGCGCG TTGCGTTACCCCTCC gldA 2659567 - 2660892 + | glycerol dehydrogenase TERM 3095 2660955 - 2660921 - f 79 -13.6 -2.78935 | opp_overlap 2660922 2660925 2660928, overlap 2660928 AGAGCCGTGATCATA CCGACAAGGCCGGC TCCAGCG GCCGGCCTTGTCAT TCCCTGCCCGACCTG TERM 3096 2660922 - 2660954 + F 93 -15.6 -3.05463 | opp_overlap 2660921 2660928, overlap 2660925 2660928 GAGCCGTGATCATAC CGACAAGGCCGGCT CCAGC GGCCGGCCTTGTCA TTCCCTGCCCGACCT TERM 3097 2660925 - 2660951 + F 86 -15.9 -2.75064 | opp_overlap 2660921 2660928, overlap 2660922 2660928 CCGTGATCATACCGA CAAGGCCGGCT CCAGC GGCCGGCCTTG TCATTCCCTGCCCGA TERM 3098 2660928 - 2660948 + F 81 -11.8 -3.52652 | opp_overlap 2660921 2660928, overlap 2660925 2660922 TGATCATACCGACAA GGCCGGCT CCAGC GGCCGGCC TTGTCATTCCCTGCC TERM 3099 2660948 - 2660928 - f 75 -11.1 -3.40299 | opp_overlap 2660928 2660925 2660922, overlap 2660921 TGATCATACCGACAA GGCCGGC TCCAGCG GCCGGCC TTGTCATTCCCTGCC AHA_2416 2661009 - 2661314 + | antibiotic biosynthesis monooxygenase family protein TERM 3100 2661516 - 2661458 - T 71 -10.3 -3.18033 | opp_overlap 2661514, overlap 2661480 GAGAAGTGAGGAAGA GTGATCAGGGGGCCAAG-CAGAACGTGGA TCA TCCACGCCCAGACTTGTCCCCC-GATGGC GCGATCAGGCCAGCC TERM 3101 2661494 - 2661480 - T 71 -10 -3.50853 | overlap 2661458 GGGGGCCAAGCAGAA CGTGGA TCA TCCACG CCCAGACTTGTCCCC pdxY-2 2662384 - 2661521 - | pyridoxal kinase TERM 3102 2662959 - 2662986 + r 100 -15.6 -3.85698 | opp_overlap 2662947 2662944 2662958 2662957, overlap 2662943 CCAGCCGGCCAAAGG CCGGATCGGGTT GGTC GGCCCGATCCGG TTTATCAGGGGCGAG AHA_2418 2663746 - 2662991 - | hypothetical protein AHA_2419 2664388 - 2663825 - | hypothetical protein TERM 3103 2664658 - 2664669 + H 74 -7.2 -4.14511 | opp_overlap 2664657 TGTAACCGAAGAATG GGCC CATC GGCC TTTTGCAATACCCTT AHA_2420 2664707 - 2665057 + | PHA granule-associated protein TERM 3104 2666199 - 2666231 + G 71 -5.6 -4.25104 | gap 1 CCCTGTTCACCACCC TGCTCGACTTCTCCC AGCC GGGGGAACTTG-GCA TTTTCATCCACGAGC AHA_2421 2665151 - 2666935 + | poly-beta-hydroxybutyrate polymerase AHA_2422 2666932 - 2667336 + | enoyl-CoA hydratase TERM 3105 2667357 - 2667388 + F 100 -20.2 -2.85351 | overlap 2667360 GTTTGCCCCATGATC TCAGTCAGCCCGGC CACT GCCGGGCTGACTGC TATGGTGTGCGCCCC TERM 3106 2667360 - 2667385 + F 100 -20.5 -2.68434 | overlap 2667357 TGCCCCATGATCTCA GTCAGCCCGGC CACT GCCGGGCTGAC TGCTATGGTGTGCGC TERM 3107 2667423 - 2667409 - f 73 -5 -4.56597 | TGTGCGCCCCAAAAA TGGTCT TGC AAACCA CAATTGCCCGCAGAG AHA_2423 2667526 - 2667759 + | hypothetical protein TERM 3108 2667996 - 2668011 + T 90 -11.8 -3.93038 | opp_overlap 2667996 ACCTCGCTTGAATAA GGGCGC CAAC GCGCCC TTTGATATTCAGCTG TERM 3109 2668011 - 2667996 - T 81 -11.8 -3.61517 | opp_overlap 2667996 ACCTCGCTTGAATAA GGGCGC CAAC GCGCCC TTTGATATTCAGCTG AHA_2424 2668556 - 2668020 - | hypothetical protein TERM 3110 2668621 - 2668599 - R 100 -13.5 -5.14563 | opp_overlap 2668601 CCCCTCATCAAAAAA GAGGGAACC GCACG GGTTCCCTC TGCTCATTCCTGTGG AHA_2425 2670395 - 2668644 - | drug efflux ABC transporter ATP-binding and permease subunits AHA_2426 2670508 - 2670392 - | hypothetical protein AHA_2427 2672241 - 2670505 - | ABC transporter, ATP-binding protein TERM 3111 2672323 - 2672304 - R 95 -15 -3.22448 | overlap 2672299 GGAAACTCAATGCAA TCGCCCCC GGCT GGGGGCGA TACGAGGGGGTCATG AHA_2428 2675184 - 2672383 - | sensory box histidine kinase/response regulator TERM 3112 2674039 - 2674025 - G 73 -7 -4.36914 | overlap 2674026 TCGCCGCGCAGAAAA TCCGGC ACG GCCGGC GACTTGTTGATGATG AHA_2429 2675339 - 2675767 + | thioredoxin 2 AHA_2430 2675933 - 2677321 + | divalent anion:Na+ symporter (DASS) family protein TERM 3113 2677337 - 2677352 + T 100 -11.8 -5.12971 | opp_overlap 2677337 TATGCCGAGTACCAA GGCCCC TGAC GGGGCC TTTTTATTGGCTCTT TERM 3114 2677352 - 2677337 - T 78 -11.8 -3.21416 | opp_overlap 2677337 TATGCCGAGTACCAA GGCCCC TGAC GGGGCC TTTTTATTGGCTCTT TERM 3115 2677553 - 2677537 - T 100 -15.1 -5.80951 | opp_overlap 2677537 2677532 2677529 ACGTAAAATAAAAAA CCCCCGC ATG GCGGGGG TCTGCTGGTTTACCG TERM 3116 2677537 - 2677553 + T 86 -15.1 -2.8934 | opp_overlap 2677537, overlap 2677532 2677529 ACGTAAAATAAAAAA CCCCCGC ATG GCGGGGG TCTGCTGGTTTACCG AHA_2431 2680048 - 2677574 - | maltodextrin phosphorylase TERM 3117 2680390 - 2680353 - R 95 -12.1 -4.41817 | opp_overlap 2680355, overlap 2680346 2680354 2680355 2680357 GAAAATAACTGAAAA TTCAGCGCACATTGAAA ACGA TTTCAATGTGCGCCGTT CATGAAAAGCAAAGA TERM 3118 2680389 - 2680354 - R 100 -15.6 -3.23464 | opp_overlap 2680355, overlap 2680346 2680353 2680355 2680357 AAAATAACTGAAAAT TCAGCGCACATTGAAA ACGA TTTCAATGTGCGCCGT TCATGAAAAGCAAAG TERM 3119 2680388 - 2680355 - R 100 -19.1 -2.52451 | opp_overlap 2680355, overlap 2680346 2680354 2680353 2680357 AAATAACTGAAAATT CAGCGCACATTGAAA ACGA TTTCAATGTGCGCCG TTCATGAAAAGCAAA TERM 3120 2680355 - 2680388 + r 100 -16.9 -3.14132 | opp_overlap 2680346 2680354 2680353 2680355 2680357 AAATAACTGAAAATT CAGCGCACATTGAAA ACGA TTTCAATGTGCGCCG TTCATGAAAAGCAAA TERM 3121 2680386 - 2680357 - R 95 -18.1 -2.78263 | opp_overlap 2680355, overlap 2680355 2680354 2680353 ATAACTGAAAATTCA GCGCACATTGAAA ACGA TTTCAATGTGCGC CGTTCATGAAAAGCA AHA_2432 2680694 - 2680434 - | hypothetical protein AHA_2433 2680877 - 2681353 + | putative cell division inhibitor TERM 3122 2681534 - 2681514 - Tf 73 -8.9 -3.84712 | overlap 2681519 GAAGCCGACATGAAA GCAAGGTGC AGA GCCCCTCGC ACTGAGCACAGTTGG TERM 3123 2681647 - 2681620 - Tf 86 -9.8 -4.28774 | opp_overlap 2681621 2681622, overlap 2681622 2681625 GCACGCAAGCCAAAA GAGAAGGCGACC CTGG GGTCGCCTTCGT TTTGTCTGCTATGGC TERM 3124 2681621 - 2681646 + TF 100 -13.3 -4.5954 | opp_overlap 2681620 2681622 2681625, overlap 2681622 CACGCAAGCCAAAAG AGAAGGCGACC CTGG GGTCGCCTTCG TTTTGTCTGCTATGG TERM 3125 2681622 - 2681645 + TF 100 -16.8 -3.35001 | opp_overlap 2681620 2681622 2681625, overlap 2681621 ACGCAAGCCAAAAGA GAAGGCGACC CTGG GGTCGCCTTC GTTTTGTCTGCTATG TERM 3126 2681645 - 2681622 - Tf 100 -16.8 -3.74381 | opp_overlap 2681622 2681621, overlap 2681620 2681625 ACGCAAGCCAAAAGA GAAGGCGACC CTGG GGTCGCCTTC GTTTTGTCTGCTATG TERM 3127 2681642 - 2681625 - Tf 93 -12.7 -3.99228 | opp_overlap 2681622 2681621, overlap 2681622 2681620 CAAGCCAAAAGAGAA GGCGACC CTGG GGTCGCC TTCGTTTTGTCTGCT AHA_2434 2683569 - 2681773 - | fumarate hydratase, class I TERM 3128 2682116 - 2682141 + gF 91 -14.7 -3.14132 | TCCATCCGGGTGGAG GTGGTCGGGCC GGCT GGACCGACCAC TTCGTCACGCACGGC TERM 3129 2682209 - 2682222 + gF 78 -3.1 -5.04385 | gap 1 AAGTCGACCCCTTCC GGC-AG CCC CTCGCC TTTTTTCAGCATGTC TERM 3130 2684750 - 2684790 + GH 83 -14.7 -2.71731 | gap 1 CATCCGCACCCTGAT CGCCG-CACAGGGCCAGC TCCACT GCTGGGCCGGTGGCGGCG TCATTGCCGACTCCG pabB 2683506 - 2684879 + | para-aminobenzoate synthase, component I AHA_2436 2684927 - 2685493 + | MutT/nudix family protein TERM 3131 2685816 - 2685852 + G 74 -5 -4.59773 | gap 1, opp_overlap 2685806, overlap 2685821 2685832 CACCAGCTGGGTGAT CAGCCTGTTCGGCACCG CCGT CGGCGCCG-GCATTCTG TTTTTGCCCATCAAC AHA_2437 2685709 - 2687007 + | serine transporter family protein TERM 3132 2687055 - 2687028 - T 100 -15.6 -3.74693 | opp_overlap 2687030, overlap 2687030 GGCCATGCCAGCAAA CATGCCAGCCGG GTAA CCGGCTGGCATT TTTTATGGTGCCAAC TERM 3133 2687030 - 2687053 + T 100 -18.2 -5.31275 | opp_overlap 2687028 2687030 CCATGCCAGCAAACA TGCCAGCCGG GTAA CCGGCTGGCA TTTTTTATGGTGCCA TERM 3134 2687053 - 2687030 - T 100 -18.2 -3.4582 | opp_overlap 2687030, overlap 2687028 CCATGCCAGCAAACA TGCCAGCCGG GTAA CCGGCTGGCA TTTTTTATGGTGCCA TERM 3135 2687384 - 2687401 + T 95 -12.7 -4.1899 | opp_overlap 2687384 CCAGACCATAAAAAA CGCCCTC GAAT GAGGGCG TTTTCAGTGCGGTGA TERM 3136 2687401 - 2687384 - T 100 -12.7 -5.34555 | opp_overlap 2687384 CCAGACCATAAAAAA CGCCCTC GAAT GAGGGCG TTTTCAGTGCGGTGA AHA_2438 2688678 - 2687428 - | serine/threonine transporter SstT TERM 3137 2688811 - 2688846 + H 76 -3.2 -5.13473 | gap 1, overlap 2688813 TGTCCGGTAACACAC GGGGTTGCGGACAAGGA ATA TCCCA-TCTGCAACCGC TTTTTTCCATATAAT AHA_2439 2689016 - 2690944 + | DNA helicase TERM 3138 2691003 - 2690977 - f 100 -7.3 -5.44119 | gap 1, overlap 2690980 TGGAGCCCAAAAAAA TAAGACCCTCGC ATCT GCGAGGGTCA-A GCCAACGGAAACGTG TERM 3139 2691001 - 2690980 - f 100 -15.9 -4.80853 | overlap 2690977 AGCCCAAAAAAATAA GACCCTCGC ATCT GCGAGGGTC AAGCCAACGGAAACG TERM 3140 2691472 - 2691461 - f 72 -2.2 -4.95302 | GTAAACAGAACAAAA GTAG TGAT CCAC TCTTTTCAGGGTAAG TERM 3141 2692461 - 2692448 - g 76 -8.1 -4.15654 | CAACAACAAGAACAA CGAGG CTTT CCTCG ACCGGGTCTATATCG TERM 3142 2693322 - 2693311 - g 74 -5.8 -4.4261 | CCTTCAACAGCAAAA CCTC AGCC GAGG AGCAGAAGAAGCACG AHA_2440 2691510 - 2693432 + | PrkA serine kinase TERM 3143 2693518 - 2693499 - g 100 -9.2 -5.27023 | opp_overlap 2693499 ACGGCAAAAACAAAA GCGCTGTC AATC GGCAGCGC TTCATCCGCCGCTAC AHA_2441 2693456 - 2694727 + | hypothetical protein TERM 3144 2695011 - 2694987 - g 70 -7.9 -4.0616 | gap 1 GAGCGCAACTACAAA CGT-GGCCAG ATGGGG CTGGCCTACG AGATCGTCATCAACT AHA_2442 2694738 - 2696255 + | hypothetical protein TERM 3145 2696276 - 2696303 + T 81 -12.8 -3.06183 | opp_overlap 2696282, overlap 2696282 CAGCTATCCACCATA AAAAAACGCGCC ATTT GGCGCGTTTTTC TTGCATCAGAATACC TERM 3146 2696282 - 2696297 + T 100 -11.8 -5.10461 | opp_overlap 2696282, overlap 2696276 TCCACCATAAAAAAA CGCGCC ATTT GGCGCG TTTTTCTTGCATCAG TERM 3147 2696297 - 2696282 - T 100 -11.8 -5.67063 | opp_overlap 2696282 2696276 TCCACCATAAAAAAA CGCGCC ATTT GGCGCG TTTTTCTTGCATCAG AHA_2443 2697033 - 2696320 - | fatty acid metabolism regulator TERM 3148 2698730 - 2698699 - g 73 -13 -3.16668 | gap 1, opp_overlap 2698708 2698722 2698727 CAACACCGGGACCAA CCT-GCCGTCGGTGG CCA CCCCCAACGGCCAGG CCGCCTTCCTGTTCA nhaB 2697368 - 2698948 + | sodium/proton antiporter TERM 3149 2698972 - 2698957 - f 81 -11.8 -3.47573 | opp_overlap 2698957 GCATTGATACCATAA GGGCCC ATGC GGGCCC TTTCCTTTTGGCCCC TERM 3150 2698957 - 2698972 + F 91 -11.8 -4.19735 | opp_overlap 2698957 GCATTGATACCATAA GGGCCC ATGC GGGCCC TTTCCTTTTGGCCCC dsbB 2699034 - 2699555 + | disulfide bond formation protein DsbB TERM 3151 2699600 - 2699578 - T 100 -17.8 -4.59944 | opp_overlap 2699578 AGCAGTACAAATAAA GAAGGGAGCC AGC GGCTCCCTTC TTTTTATGTCATTTT TERM 3152 2699578 - 2699600 + T 100 -17.8 -5.07941 | opp_overlap 2699578 AGCAGTACAAATAAA GAAGGGAGCC AGC GGCTCCCTTC TTTTTATGTCATTTT AHA_2446 2700295 - 2699642 - | DedA protein AHA_2447 2700722 - 2700453 - | hypothetical protein TERM 3153 2700685 - 2700668 - G 74 -14.1 -2.91429 | overlap 2700658 2700659 2700679 GAAAACCCCGATAGA GGCGGCG CAAA CGCCGCC AGATCAGCCAGCGTC uvrB 2702731 - 2700719 - | excinuclease ABC subunit B TERM 3154 2703043 - 2703061 + H 78 -5.8 -4.81212 | CCTCCCTTTTGATTC CGCATCCG CCC CGGCAGCG TTTTGTTCTGCTGCG AHA_2450 2703718 - 2705403 + | hypothetical protein TERM 3155 2705442 - 2705462 + F 91 -9.7 -4.61873 | opp_overlap 2705442 AGTACACCAACTCAA GGGGAGC AGCTATG GCTCCCC TTTTCGTTTATGCCG AHA_2451 2705621 - 2707153 + | lytic transglycosylase, catalytic TERM 3156 2707166 - 2707202 + F 95 -12.9 -4.08767 | overlap 2707167 TAAGCCAGCCCGTCA TCCGCGAGGCTCCTCCT CTG ACGGGGAGCCTCGCGCC TTTTCAGCCGCTGCC TERM 3157 2707167 - 2707201 + F 100 -16.4 -3.05046 | overlap 2707166 AAGCCAGCCCGTCAT CCGCGAGGCTCCTCCT CTG ACGGGGAGCCTCGCGC CTTTTCAGCCGCTGC AHA_2452 2707384 - 2708349 + | hypothetical protein TERM 3158 2708638 - 2708675 + G 76 -6.9 -4.46212 | gap 1, overlap 2708643 TTTGCACTGTTGCTG CTGATGCTGGCCTACGGC CTG GCCCTTGGCTGGC-TCGG TTTTCTGGTCGCCAC AHA_2453 2708392 - 2708853 + | hypothetical protein TERM 3159 2709628 - 2709653 + G 71 -4.7 -4.4648 | AAAGAGATAGCGCCC CCCATTGCC CGCTCCTC GGTGATGGG TTTTCTCATCGGCGT AHA_2454 2708863 - 2710395 + | TctA protein TERM 3160 2710420 - 2710437 + T 100 -12.7 -5.06414 | opp_overlap 2710420 TCTTACACAGCAAAA GAGCGCC GACA GGCGCTC TTTTTATTGGCAAGA TERM 3161 2710437 - 2710420 - T 100 -12.7 -4.39166 | opp_overlap 2710420 TCTTACACAGCAAAA GAGCGCC GACA GGCGCTC TTTTTATTGGCAAGA AHA_2455 2711139 - 2710474 - | transcriptional regulatory protein CitT dpiB 2712723 - 2711140 - | sensor histidine kinase DpiB TERM 3162 2711953 - 2711983 + g 73 -13.3 -3.13403 | gap 1, overlap 2711951 CGGCAGCAGCCGGGT GACGGGCTG-GCCG ATGG CGGCCCAGGCCGTC TGTTCGTCAAGGCGC AHA_2457 2713955 - 2712720 - | Mlc protein TERM 3163 2714030 - 2714001 - R 100 -14.3 -4.43877 | opp_overlap 2714001 2714002, overlap 2714002 CAATCCCCAAATAAA GTGCGGCCCGAAC CGGG GTTCAGGCCGCAT CTTGTGAGGGACATC TERM 3164 2714001 - 2714031 + r 78 -11.9 -3.29144 | gap 1, opp_overlap 2714001 2714002, overlap 2714002 CAATCCCCAAATAAA G-TGCGGCCCGAAC CGGG GTTCAGGCCGCATC TTGTGAGGGACATCC TERM 3165 2714002 - 2714029 + r 100 -15.6 -3.21395 | opp_overlap 2714002 2714001, overlap 2714001 AATCCCCAAATAAAG TGCGGCCCGAAC CGGG GTTCAGGCCGCA TCTTGTGAGGGACAT TERM 3166 2714029 - 2714002 - R 100 -17.8 -3.25603 | opp_overlap 2714001 2714002, overlap 2714001 AATCCCCAAATAAAG TGCGGCCCGAAC CGGG GTTCAGGCCGCA TCTTGTGAGGGACAT AHA_2458 2715730 - 2714063 - | methyl-accepting chemotaxis protein AHA_2459 2715742 - 2716317 + | SecC motif-containing protein TERM 3167 2716334 - 2716365 + F 100 -18 -3.17763 | opp_overlap 2716341 CGCCGCGACTCGTGT CGACAGAGGGGGCC CAGC GGCCCCCTCTGCTG TTGCTGGAGTGTGAC TERM 3168 2716358 - 2716341 - f 86 -14.1 -2.87211 | opp_overlap 2716334 ACTCGTGTCGACAGA GGGGGCC CAGC GGCCCCC TCTGCTGTTGCTGGA TERM 3169 2717738 - 2717755 + G 72 -4.1 -4.56775 | GCCCAGTACCGCCAC GGCGA GCGGGTCA TCGCC TTTTTCCGCGACAAT TERM 3170 2718044 - 2718013 - g 72 -11.6 -3.33315 | gap 1 GGAAGAGCGCTACAA GGGCACCCGCCCC GTGCTGT GGGGCG-ATGCCC TGCGCGAAGCCGAAT glpA 2716511 - 2718190 + | sn-glycerol-3-phosphate dehydrogenase subunit A TERM 3171 2719109 - 2719148 + G 70 -10 -3.61398 | gap 1 GAATGGCGACGATCA GCTGTTCGAGGCGGACCAC TTC GTGCT-CGCCTCCGGCAGC TTCTTCAGCCGCGGG AHA_2461 2718180 - 2719460 + | anaerobic glycerol-3-phosphate dehydrogenase subunit B glpC 2719512 - 2720714 + | sn-glycerol-3-phosphate dehydrogenase subunit C TERM 3172 2720781 - 2720762 - T 100 -15 -5.05601 | opp_overlap 2720762 CACCAGATAGAAAAA GAGCCGGC AATT GCCGGCTC TTTTTATTCACATCC TERM 3173 2720762 - 2720781 + T 100 -15 -5.08601 | opp_overlap 2720762 CACCAGATAGAAAAA GAGCCGGC AATT GCCGGCTC TTTTTATTCACATCC AHA_2463 2731490 - 2720802 - | type I secretion target GGXGXDXXX repeat-containing protein TERM 3174 2726427 - 2726415 - G 74 -10.5 -3.72695 | ATTGTCGTGATCAAA GCCGG GTG CCGGC GTGAAACGGTAGCTG TERM 3175 2731747 - 2731724 - H 74 -7.4 -4.15565 | gap 1, opp_overlap 2731724 TCCAGTATGGCAAAA GGTGAC-GCAG CCG CCGCTGCCACC CCTGATTGAATCCGG TERM 3176 2732963 - 2732951 - g 71 -9.1 -3.80841 | AGTATTACGATGAAA TCGGC TTT GCCGA CTGGACTCATGCCCT nrfA 2732209 - 2733654 + | cytochrome c nitrite reductase AHA_2465 2733706 - 2734320 + | cytochrome c-type protein NrfB AHA_2466 2734317 - 2735009 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein AHA_2467 2735006 - 2735962 + | protein NrfD TERM 3177 2735977 - 2736004 + F 100 -17 -4.21438 | ACGGTATGATCACCA GCGCCAGCCACC CTCG GGTGACTGGCGC TTATTTGTTGCGATG TERM 3178 2736932 - 2736912 - g 70 -7.5 -4.07568 | opp_overlap 2736897 2736917 GGTGGTGTGCGAAAA GCGCGGC GCCTACG GCCACGC CGTGCTGCTGCTCTC TERM 3179 2736987 - 2737020 + G 75 -12.3 -3.59979 | overlap 2736977 ACTCGGCACCTTCGT GGTGCGCTCCGGGGT GCTT ACCTCGGTGCACGCC TTTGCAGTCGACCCC ccmF-2 2736112 - 2738073 + | cytochrome c-type biogenesis protein CcmF AHA_2469 2738070 - 2738669 + | thiol:disulfide interchange protein DsbE AHA_2470 2738666 - 2739856 + | formate-dependent nitrite reductase complex NrfF subunit TERM 3180 2739864 - 2739892 + F 81 -12.4 -3.53012 | GAGGCTGACCGCACG CGTGATTGGGGC TGAAT GCCCCTGTCACG TTTGGCCCGCACAAA AHA_2471 2739994 - 2740449 + | MutT/nudix family protein TERM 3181 2741274 - 2741256 - g 83 -11.6 -4.07885 | GATGTCGTCGGAAAA CCGCGCCG CCT CGGCGCTG GCCAGAAACTACCCC AHA_2472 2740852 - 2741772 + | D-alanyl-D-alanine carboxypeptidase family protein TERM 3182 2741794 - 2741827 + T 100 -16.1 -4.54026 | opp_overlap 2741799, overlap 2741799 CGGCAATCCTCGTCA AAAAAGCCCCCGCAT CCAG GTGCGGGGGCTTTTG TTATTTTGTTTCGGG TERM 3183 2741822 - 2741799 - T 100 -15.3 -5.00884 | opp_overlap 2741794 2741799 ATCCTCGTCAAAAAA GCCCCCGCA TCCAGG TGCGGGGGC TTTTGTTATTTTGTT TERM 3184 2741799 - 2741822 + T 100 -16 -5.14949 | opp_overlap 2741799, overlap 2741794 ATCCTCGTCAAAAAA GCCCCCGCAT CCAG GTGCGGGGGC TTTTGTTATTTTGTT AHA_2473 2743416 - 2741866 - | dimodular nonribosomal peptide synthetase AHA_2474 2749607 - 2743413 - | nonribosomal peptide synthetase TERM 3185 2744346 - 2744288 - G 77 -13.7 -3.26366 | overlap 2744286 2744289 CATATTGAACCAACA GGCCCGCGGTCACG-CCAAGCTCGCGGGC ACG GCGCGCGAGCAAGGTCGCCACCTCGG-CC GGCAACGCCGTGGCG TERM 3186 2744346 - 2744289 - G 71 -13.9 -2.55337 | gap 1, overlap 2744286 2744288 ATATTGAACCAACAG GCCCGCGGTCACG-CCAAGCTCGCGGGC ACG GCGCGCGAGCAAGGTCGCCACCTCGGCC GGCAACGCCGTGGCG TERM 3187 2749479 - 2749464 - G 74 -9 -3.86346 | overlap 2749465 2749467 2749469 GTACTGCTCGATAAA CCAGAG CCCG CTCTGG GACGACGAAAGCGGC TERM 3188 2749540 - 2749490 - G 71 -9.5 -3.78775 | gap 1, overlap 2749469 2749467 2749465 TCTGGGACGACGAAA GCGGCCCCTGCCGGGCGCCC-TCG GCGA CGATAGGCGCCTCGAAGGCGGCGC GGGCCGCCAGGCAGC AHA_2475 2750473 - 2749724 - | 2,3-dihydroxybenzoate-2,3-dehydrogenase AHA_2476 2753604 - 2750503 - | nonribosomal peptide synthetase TERM 3189 2753518 - 2753536 + g 71 -11 -3.49924 | overlap 2753498 2753508 GAAGGCGATGCACTC GGCGGTGT TGA ACATCGCC TTGTCGTCGTTTAAC AHA_2477 2754524 - 2753601 - | isochorismatase TERM 3190 2754569 - 2754611 + r 73 -10.5 -3.42503 | gap 2, overlap 2754571 TGTTGTCAGGGGATT GCCGGCGGCTATGAGGTGCGC AAT GCGCGCC-CGCAGCC-CCTGC TTGTCAATCTTGCCC entE 2756209 - 2754548 - | enterobactin synthase subunit E AHA_2479 2757479 - 2756286 - | isochorismate synthases TERM 3191 2757289 - 2757325 + g 86 -16.6 -3.16071 | gap 1, overlap 2757287 2757284 AGCAGGGGGTTGGCC TGGCCGGCGGCGCTGGC CGCT GCCAGCGC-GTCGGCGA TCTGTTGCTCTAGCA TERM 3192 2757520 - 2757506 - H 71 -5.8 -4.24326 | opp_overlap 2757505 2757501 2757499 AAATATGATTCAAAA TGATAA TGA TTATCA GTTTGTATTTGTGCG TERM 3193 2757732 - 2757712 - H 78 -6 -4.83169 | opp_overlap 2757716, overlap 2757713 AGGCTGCGACAAAAA CCGCGGGC TCGCC GCCCACGC TGGCAGCGAACGCCA TERM 3194 2757731 - 2757713 - H 71 -9.5 -3.49419 | opp_overlap 2757716, overlap 2757712 GGCTGCGACAAAAAC CGCGGGC TCGCC GCCCACG CTGGCAGCGAACGCC AHA_2480 2757805 - 2758356 + | hypothetical protein TERM 3195 2758364 - 2758398 + F 100 -7.1 -5.55769 | TGCTCTGACCCCCAA CCGCGCCCCTC TTCTCTTCAACTC CAGGGGCGCGG TTTTTTCTTCTCAAG AHA_2481 2758502 - 2760502 + | hypothetical protein TERM 3196 2760521 - 2760551 + T 75 -12.7 -2.60763 | opp_overlap 2760527, overlap 2760527 GCCACTCGCTGAATA GAAAAAGGGAGCC ATATC GGCTCCCTTTTTA GTTGTGGCGTCTGGC TERM 3197 2760527 - 2760545 + T 100 -11.7 -4.93365 | opp_overlap 2760527, overlap 2760521 CGCTGAATAGAAAAA GGGAGCC ATATC GGCTCCC TTTTTAGTTGTGGCG TERM 3198 2760545 - 2760527 - T 100 -12.4 -5.0916 | opp_overlap 2760527 2760521 CGCTGAATAGAAAAA GGGAGCCA TAT CGGCTCCC TTTTTAGTTGTGGCG glgC-1 2761854 - 2760580 - | glucose-1-phosphate adenylyltransferase AHA_2484 2762043 - 2763683 + | GGDEF/eal domain-containing protein AHA_2483 2764140 - 2763646 - | hypothetical protein TERM 3199 2764266 - 2764245 - R 100 -10.9 -5.60993 | opp_overlap 2764245 CCGGCCATAAAAAAA CCGACATCC TCGC GGATATCGG TTCTCGTCAGACGGG AHA_2485 2764671 - 2764309 - | hypothetical protein TERM 3200 2764793 - 2764804 + r 74 -7.2 -4.18018 | opp_overlap 2764792 TCACACAAAAAACTG CCCG CGGT CGGG TTTTACCTGACAAAA TERM 3201 2764837 - 2764820 - R 100 -12.7 -4.4009 | opp_overlap 2764820 TTTTACCTGACAAAA CGCCTCC CGAA GGAGGCG TTTCAGCGCAAGGGG TERM 3202 2764820 - 2764837 + r 85 -12.7 -3.53012 | opp_overlap 2764820 TTTTACCTGACAAAA CGCCTCC CGAA GGAGGCG TTTCAGCGCAAGGGG AHA_2486 2766162 - 2764858 - | inosine-guanosine kinase TERM 3203 2766322 - 2766304 - R 100 -10.3 -5.54894 | opp_overlap 2766304 AACCCATCAAAAAAA CCACCTC GCAAG GAGGTGG TTTTTGCCGCGAACA TERM 3204 2766304 - 2766322 + r 95 -10.3 -4.56597 | opp_overlap 2766304 AACCCATCAAAAAAA CCACCTC GCAAG GAGGTGG TTTTTGCCGCGAACA AHA_2487 2766734 - 2766342 - | hypothetical protein hemH 2767832 - 2766807 - | ferrochelatase TERM 3205 2767841 - 2767825 - G 89 -11.5 -4.2528 | opp_overlap 2767825 TCTGAATGCAAGAAA GGGCCCA TGC CGGGCCC TTGTCTCACTGGCAC TERM 3206 2767825 - 2767841 + g 71 -10.8 -3.51924 | opp_overlap 2767825 TCTGAATGCAAGAAA GGGCCC ATGCC GGGCCC TTGTCTCACTGGCAC AHA_2489 2768540 - 2767896 - | adenylate kinase TERM 3207 2768458 - 2768471 + g 72 -2.3 -4.68593 | TCGCCGGTGGAGATC TGCGG AATA CCGTG TTTTTCCATGATGAA TERM 3208 2768720 - 2768706 - R 86 -10 -4.28589 | overlap 2768710 AAAAATGAGTGAAAA TGCAGC TGC GCTGCA CGCAACTGGCGCCTA TERM 3209 2768757 - 2768726 - R 100 -23.8 -3.05384 | CTGCGCTGCACGCAA CTGGCGCCTACCCC GGAC GGGGCAGGCGCCAG AAAAGAAAGAGCCCA TERM 3210 2768789 - 2768766 - R 100 -14.6 -4.77173 | GCGCCAGAAAAGAAA GAGCCCACTG CACG CAGTGGGCCC AAACATCATGCCTGG htpG 2770720 - 2768795 - | heat shock protein 90 TERM 3211 2768873 - 2768915 + g 72 -13.5 -2.75992 | opp_overlap 2768890 2768911, overlap 2768864 2768852 2768870 CTGCTCGGCCAGCTG GGC-CTGTTCGTGCAAGAGGG TGA CCCACTCGC-CGAACAGCGCC TCGTCTTCGATGGCG TERM 3212 2770875 - 2770862 - R 100 -9.5 -5.4833 | opp_overlap 2770862 TTACCCAACAAAAAA CCCGC CGAG GCGGG TTCTGGTATTGCTGC TERM 3213 2770862 - 2770875 + r 71 -9.5 -3.53531 | opp_overlap 2770862 TTACCCAACAAAAAA CCCGC CGAG GCGGG TTCTGGTATTGCTGC TERM 3214 2770975 - 2770962 - R 70 -9.5 -3.37344 | CGCTGACTCAATTAA GGGGC TGAC GCCCC ATCAGAGAGTGGGAG recR 2771556 - 2770954 - | recombination protein RecR fdhD-2 2772539 - 2771682 - | formate dehydrogenase family accessory protein FdhD AHA_2493 2774680 - 2772551 - | formate hydrogenlyase transcriptional activator AHA_2494 2775433 - 2775035 - | hypothetical protein TERM 3215 2775507 - 2775459 - R 77 -3.8 -5.0538 | gap 1, opp_overlap 2775465, overlap 2775460 2775462 2775463 TGCCAGCTGAAAAAA GGAT-GAGCGGATCCGGGCCCTG TATA CAGAGCCTGGATCCACTTTATTA ACGACGATTACCCTT TERM 3216 2775503 - 2775462 - R 75 -11.5 -3.38726 | opp_overlap 2775465, overlap 2775460 2775459 2775463 CAGCTGAAAAAAGGA TGAGCGGATCCGGGCCCTG TATA CAGAGCCTGGATCCACTTT ATTAACGACGATTAC TERM 3217 2775502 - 2775463 - R 83 -15 -2.62513 | opp_overlap 2775465, overlap 2775462 2775460 2775459 AGCTGAAAAAAGGAT GAGCGGATCCGGGCCCTG TATA CAGAGCCTGGATCCACTT TATTAACGACGATTA TERM 3218 2775465 - 2775500 + r 100 -15.4 -4.15222 | opp_overlap 2775463 2775462 2775460 2775459 CTGAAAAAAGGATGA GCGGATCCGGGCCCTG TATA CAGAGCCTGGATCCAC TTTATTAACGACGAT fdhA 2777659 - 2775515 - | formate dehydrogenase, alpha subunit, selenocysteine-containing TERM 3219 2777732 - 2777689 - R 77 -4.5 -4.8622 | opp_overlap 2777714 2777716, overlap 2777690 2777691 TTTGTTAACGAAAAA CGGCTCGGCAA-GCCCGCTCA CACC CGCGCTGGCATTGCC-AGCAG GGCCTCGGCACTGGC AHA_2496 2778305 - 2777706 - | iron-sulfur cluster-binding protein TERM 3220 2778938 - 2778949 + H 74 -3 -4.89567 | ACTTATTAATATTGA CTTT TCAG AAAG TTTTATATTTTCAAA AHA_2497 2779070 - 2780818 + | hypothetical protein TERM 3221 2782695 - 2782722 + G 75 -14 -3.05022 | opp_overlap 2782693 2782692 TCGCTGGAGAAATCC CCGCCGACCCGG GTGG CCGGCACGGCGG TCTATATGTCGCGGG trkD 2781291 - 2783159 + | potassium transport protein Kup TERM 3222 2783178 - 2783209 + F 100 -18.8 -4.42386 | opp_overlap 2783179, overlap 2783179 CGTGAGTTGCGCTAA AGAGAGAGGGAGGC ATTG GCCTCCCTCTCTCA TTTTGTAACTAACCC TERM 3223 2783179 - 2783208 + F 100 -22.3 -3.2511 | opp_overlap 2783179, overlap 2783178 GTGAGTTGCGCTAAA GAGAGAGGGAGGC ATTG GCCTCCCTCTCTC ATTTTGTAACTAACC TERM 3224 2783208 - 2783179 - f 100 -22.3 -3.53811 | opp_overlap 2783179 2783178 GTGAGTTGCGCTAAA GAGAGAGGGAGGC ATTG GCCTCCCTCTCTC ATTTTGTAACTAACC TERM 3225 2783460 - 2783510 + F 71 -8.1 -3.91716 | opp_overlap 2783460 2783459 GTAGGGTGCAACAAG CGCAGCGCCGTGCACCGCGAACA TATTT TGATAGCGGTGCAATTCACTGCG TTCTTTGCACCCTAC TERM 3226 2783612 - 2783630 + F 70 -6.7 -4.13304 | gap 1, opp_overlap 2783609 CAGTGGGACAAGGCC TCGACGCC CGTC GGCG-CGA TTTTAAACATCATTT TERM 3227 2783709 - 2783683 - f 80 -5 -4.88407 | CCAGCCAAGCAAAAA CAAGCTGGCCCG TAT CTTGCCAACCTG CCCCTACTTTCTCCG hyfA 2783748 - 2784413 + | hydrogenase-4 component A AHA_2500 2784413 - 2786284 + | hydrogenase 4 subunit B AHA_2501 2786286 - 2787239 + | hydrogenase-4 component C AHA_2502 2787320 - 2789038 + | hydrogenase-4 component G TERM 3228 2789552 - 2789525 - g 74 -4.8 -4.55798 | gap 1, overlap 2789527 2789530 2789532 GACTGCAAACGAAAA CAGAG-CATGCTG AGC CAGCCTGACTCGG CCCTGATCACACCGA AHA_2503 2789048 - 2789605 + | hydrogenase-4 component H AHA_2504 2789605 - 2790420 + | hydrogenase-4 component I AHA_2505 2790413 - 2790826 + | formate hydrogenlyase maturation protein HycH hycI 2790826 - 2791335 + | hydrogenase 3 maturation protease TERM 3229 2791403 - 2791374 - f 91 -7.9 -5.01546 | opp_overlap 2791375, overlap 2791362 2791375 AAAGGCATATAAAAA CGCCCGATGTT AAATTAAA AACATCGGGCT AATTGCCATGAAATT TERM 3230 2791402 - 2791375 - f 77 -11.4 -3.59301 | opp_overlap 2791375, overlap 2791362 2791374 AAGGCATATAAAAAC GCCCGATGTT AAATTAAA AACATCGGGC TAATTGCCATGAAAT TERM 3231 2792879 - 2792868 - g 72 -4.4 -4.57341 | AAGCGGCTGGAAAAA CATC CCAT GATG CGCACCTTCCGCTCA selA 2791890 - 2793326 + | selenocysteine synthase TERM 3232 2794159 - 2794101 - g 75 -14.5 -2.82623 | opp_overlap 2794101, overlap 2794087 2794098 GGTGCCCCACAAGGA GGTGGCCCGCGGCCACTGC-CTGACCAGC GCT GCCGGCCAGTGC-GAGGCGGCAACCCACC TTATCGTGCGACTCT TERM 3233 2794445 - 2794418 - g 76 -8.2 -4.2349 | opp_overlap 2794415, overlap 2794419 CCGCCAGACGCAAAA CGCTGCACGCCC TGCT GGGCGAGCTGCC TGATGACTTGGATCG TERM 3234 2794444 - 2794419 - g 70 -11.7 -3.13773 | opp_overlap 2794415, overlap 2794418 CGCCAGACGCAAAAC GCTGCACGCCC TGCT GGGCGAGCTGC CTGATGACTTGGATC selB 2793331 - 2795214 + | selenocysteine-specific translation elongation factor TERM 3235 2796558 - 2796545 - g 71 -8.1 -3.84406 | overlap 2796548 GGCGCAGCAGAAGAA CCAGC TGGC GCTGG CCTTCGGCCGCCAGC TERM 3236 2797360 - 2797378 + G 85 -10.2 -4.37092 | GCAAAGGCTCCTCCA CCGCCAGC CTG GCTGCCGG TTTTATCCGCGCCAT hypF 2795211 - 2797649 + | [NiFe] hydrogenase maturation protein HypF hypC 2797655 - 2797906 + | hydrogenase assembly chaperone HypC/HupF TERM 3237 2798690 - 2798715 + G 95 -11.1 -4.56597 | gap 1, opp_overlap 2798663 CCGCCAGCGGCAACC GCGC-CGCCCAG CGG CTGGTCGAGCGC TTTTTCGAGACCCGC hypD 2797900 - 2799018 + | hydrogenase expression/formation protein HypD TERM 3238 2799657 - 2799642 - g 70 -7.5 -4.08692 | overlap 2799631 GAAGCGCTGCTAAAA GCGGG CATTAC CCCGC ACGCCCTGCGCGATG TERM 3239 2799995 - 2799956 - g 70 -12 -3.15544 | opp_overlap 2799961 GGTGATCCTGAGCAA CCCCTGGGGCAGCCGCCG TTAT CTGGAGCTGCCGCAAGGG GAGCTGCTGCCGCGG hypE 2799015 - 2800019 + | hydrogenase expression/formation protein HypE hypA 2800089 - 2800430 + | hydrogenase nickel insertion protein HypA AHA_2515 2800432 - 2801523 + | hydrogenase nickel incorporation protein HypB TERM 3240 2801587 - 2801556 - T 100 -17.4 -4.43859 | opp_overlap 2801559, overlap 2801559 GATAACGGTAGAAAA CAAGAGAGGGAGGC TGAT GCCTCCCTCTCTTT TATCTGTGGACCTTG TERM 3241 2801584 - 2801559 - T 100 -19.1 -4.32669 | opp_overlap 2801559, overlap 2801556 AACGGTAGAAAACAA GAGAGGGAGGC TGAT GCCTCCCTCTC TTTTATCTGTGGACC TERM 3242 2801559 - 2801584 + T 100 -19.1 -4.60797 | opp_overlap 2801556 2801559 AACGGTAGAAAACAA GAGAGGGAGGC TGAT GCCTCCCTCTC TTTTATCTGTGGACC AHA_2516 2802500 - 2801859 - | ATPase protein DppE TERM 3243 2802105 - 2802137 + g 77 -13.3 -3.57144 | overlap 2802106 GCGCAGCAGCGCGAT GCGGGCCAGCTCGCC ACC GGAGAGCTGGCCGGG TTTACGACTGAGCCA TERM 3244 2802106 - 2802136 + g 81 -16.8 -2.74144 | overlap 2802105 CGCAGCAGCGCGATG CGGGCCAGCTCGCC ACC GGAGAGCTGGCCGG GTTTACGACTGAGCC AHA_2517 2803288 - 2802500 - | ABC nickel/di-oligopepetide transporter, ATP binding subunit AHA_2518 2804204 - 2803392 - | ABC nickel/di-oligopepetide transporter, permease subunit AHA_2519 2805198 - 2804194 - | ABC nickel/di-oligopepetide transporter, permease subunit AHA_2520 2806814 - 2805183 - | ABC transporter, periplasmic nickel/di-oligopepetide binding protein TERM 3245 2806878 - 2806894 + r 71 -10.8 -3.22653 | opp_overlap 2806874 2806871, overlap 2806876 GACAGAAGTGAGTGA GGGGCC AAAAC GGCCCC TATTCTAAACCTGAT AHA_2521 2807470 - 2806922 - | hydrogenase 2-specific chaperone hybD 2807982 - 2807452 - | hydrogenase 2 maturation endopeptidase hybC 2809685 - 2807982 - | hydrogenase 2 large subunit AHA_2524 2810869 - 2809682 - | putative hydrogenase 2 b cytochrome subunit AHA_2525 2811887 - 2810862 - | hydrogenase 2 protein HybA AHA_2526 2813023 - 2811890 - | hydrogenase 2 small subunit AHA_2527 2813759 - 2814127 + | hypothetical protein AHA_2528 2814124 - 2814444 + | anti-anti-sigma factor family protein AHA_2529 2814431 - 2816587 + | putative chemotaxis protein AHA_2530 2816631 - 2818307 + | methyl-accepting chemotaxis protein cheW-3 2818317 - 2818844 + | chemotaxis protein CheW cheR-2 2818847 - 2819710 + | CheR methyltransferase SAM binding domain-containing protein cheB-3 2819707 - 2820783 + | chemotaxis-specific methylesterase TERM 3246 2821983 - 2821962 - g 75 -4.3 -4.7173 | GATCAGATTGAAAAA TGGTTTGCC GAAT GGCAGGCCA GGGCGACCTGAATCG AHA_2534 2820786 - 2821994 + | response regulator AHA_2535 2822106 - 2823737 + | methyl-accepting chemotaxis protein TERM 3247 2823742 - 2823786 + F 70 -9.7 -3.41602 | opp_overlap 2823744 2823745, overlap 2823750 2823752 TCAAGGTCTAATACA AACGCTGAGACCCGCCCGGCC ATG GGCCTGGCGGGTCTCTCCTCC TTATCCTGCCATCAA TERM 3248 2823784 - 2823744 - f 100 -16.7 -4.20025 | opp_overlap 2823742 2823750 2823752, overlap 2823745 AAGGTCTAATACAAA CGCTGAGACCCGCCCGGCC ATG GGCCTGGCGGGTCTCTCCT CCTTATCCTGCCATC TERM 3249 2823783 - 2823745 - f 100 -20.2 -3.11292 | opp_overlap 2823742 2823750 2823752, overlap 2823744 AGGTCTAATACAAAC GCTGAGACCCGCCCGGCC ATG GGCCTGGCGGGTCTCTCC TCCTTATCCTGCCAT TERM 3250 2823750 - 2823778 + F 100 -21.7 -2.88231 | opp_overlap 2823745 2823744, overlap 2823742 2823752 TAATACAAACGCTGA GACCCGCCCGGCC ATG GGCCTGGCGGGTC TCTCCTCCTTATCCT TERM 3251 2823752 - 2823776 + F 100 -18.5 -2.98729 | opp_overlap 2823745 2823744, overlap 2823750 2823742 ATACAAACGCTGAGA CCCGCCCGGCC ATG GGCCTGGCGGG TCTCTCCTCCTTATC alr-2 2824216 - 2825325 + | alanine racemase AHA_2537 2826170 - 2825475 - | hypothetical protein AHA_2538 2826214 - 2826816 + | Cro/CI family transcriptional regulator TERM 3252 2826879 - 2826900 + T 100 -17.3 -3.61764 | opp_overlap 2826879 CCTGATAAACAAAAA GGCCCCGTC TTGC GACGGGGCC TTTGCCAATTGGTGG TERM 3253 2826900 - 2826879 - T 100 -17.3 -5.38054 | opp_overlap 2826879 CCTGATAAACAAAAA GGCCCCGTC TTGC GACGGGGCC TTTGCCAATTGGTGG TERM 3254 2826976 - 2826941 - T 100 -20.8 -3.53224 | opp_overlap 2826941 2826951, overlap 2826951 TATGGCTGCGCCAAA TTACAAAAAACCGACC ATCA GGTCGGTTTTTTGTAA TTTGGCGGTGAGGGA TERM 3255 2826941 - 2826976 + T 100 -20.8 -3.57144 | opp_overlap 2826941 2826951, overlap 2826951 TATGGCTGCGCCAAA TTACAAAAAACCGACC ATCA GGTCGGTTTTTTGTAA TTTGGCGGTGAGGGA TERM 3256 2826951 - 2826966 + T 100 -10.4 -5.42265 | opp_overlap 2826951 2826941, overlap 2826941 CCAAATTACAAAAAA CCGACC ATCA GGTCGG TTTTTTGTAATTTGG TERM 3257 2826966 - 2826951 - T 100 -10.4 -5.42265 | opp_overlap 2826941 2826951, overlap 2826941 CCAAATTACAAAAAA CCGACC ATCA GGTCGG TTTTTTGTAATTTGG AHA_2540 2829091 - 2827250 - | putative sulfate transporter YchM TERM 3258 2829725 - 2829706 - H 95 -15 -3.64103 | opp_overlap 2829706 GAGCCACATTCGAAA GCCCAGCC TTAT GGCTGGGC TTTTTTCGTTTCCCC TERM 3259 2829706 - 2829725 + H 100 -15 -5.37593 | opp_overlap 2829706 GAGCCACATTCGAAA GCCCAGCC TTAT GGCTGGGC TTTTTTCGTTTCCCC AHA_2543 2829840 - 2830325 + | hypothetical protein AHA_2544 2830443 - 2830892 + | hypothetical protein AHA_2545 2830975 - 2833866 + | hypothetical protein AHA_2546 2833866 - 2834684 + | hypothetical protein TERM 3260 2834700 - 2834751 + F 71 -6.4 -4.30034 | opp_overlap 2834716, overlap 2834708 2834716 TCGCCCAGCGCGGCG CAGCAGCGGATGACAAGGCGGCTC AGCG GGGCCGCCTTTTCAACGTCTTCTC TTTTGGTCAGCTTTT TERM 3261 2834708 - 2834743 + F 83 -14 -2.73706 | opp_overlap 2834716, overlap 2834700 2834716 CGCGGCGCAGCAGCG GATGACAAGGCGGCTC AGCG GGGCCGCCTTTTCAAC GTCTTCTCTTTTGGT TERM 3262 2834716 - 2834735 + G 89 -12.8 -4.14874 | opp_overlap 2834716, overlap 2834708 2834700 AGCAGCGGATGACAA GGCGGCTC AGCG GGGCCGCC TTTTCAACGTCTTCT TERM 3263 2834842 - 2834865 + G 75 -13.8 -3.08046 | overlap 2834842 CTGCCGGTCTGATGG CCGCCTGGCG CCTG CGCCAGGCCG GTTTTGCAGTCACCC TERM 3264 2834842 - 2834866 + G 93 -13.6 -4.13945 | gap 1, overlap 2834842 CTGCCGGTCTGATGG CC-GCCTGGCG CCTG CGCCAGGCCGG TTTTGCAGTCACCCT AHA_2547 2834709 - 2836205 + | hypothetical protein AHA_2548 2836353 - 2836913 + | hypothetical protein TERM 3265 2836982 - 2836954 - f 73 -8.7 -3.85817 | overlap 2836955 ATTCGCTGTGACAAA CGGTGGGTTTCGC TGC GCGCTACCCACCC TACGCACGGCCAGCT TERM 3266 2836981 - 2836955 - f 75 -12.2 -2.91276 | overlap 2836954 TTCGCTGTGACAAAC GGTGGGTTTCGC TGC GCGCTACCCACC CTACGCACGGCCAGC TERM 3267 2837990 - 2838047 + G 73 -12.7 -3.1829 | gap 2, overlap 2838022 ACCCTGCTCGGCCTG GTGCTGCTGGCA-GGCTGGCTGC-CGC GCCGGA GCGAGCTGCCAGCCATGCTGGGAGCCC TGTTGCTGCTGCTCT AHA_2549 2837093 - 2838376 + | hypothetical protein AHA_2550 2838428 - 2839618 + | bicyclomycin resistance protein TERM 3268 2839674 - 2839616 - T 100 -10.6 -5.45652 | gap 4, opp_overlap 2839631, overlap 2839631 ACCGGCAAGAAAAAA TGAGCTATTAAAAAACGCGGCCCCTCTCGC TCA ACG-GAGGGGCCGCGTTCTTT--TAGC-CG CAGCACATAGATTCG TERM 3269 2839662 - 2839631 - T 100 -20.2 -5.1675 | gap 1, opp_overlap 2839631, overlap 2839616 TGAGCTATTAAAAAA CGCGGCCCCTCTCGC TCA ACG-GAGGGGCCGCG TTCTTTTAGCCGCAG TERM 3270 2839631 - 2839662 + T 100 -19.5 -4.17048 | gap 1, opp_overlap 2839616 2839631 TGAGCTATTAAAAAA CGCGGCCCCTCTCG CTCAA CG-GAGGGGCCGCG TTCTTTTAGCCGCAG AHA_2551 2840183 - 2839716 - | hypothetical protein TERM 3271 2839962 - 2839986 + g 76 -8.5 -4.14392 | opp_overlap 2839935 GCCGTTGGCGGTGGA TCCCGCCTGCA CCA TGAAGCCGGGA TTTTGCCGCTTACCC AHA_2552 2840204 - 2841016 + | lipoprotein-releasing system ATP-binding protein LolD AHA_2553 2841062 - 2843461 + | adhesion component transport transmembrane protein ABC transporter, putative TERM 3272 2844139 - 2844153 + G 71 -5.6 -4.33105 | opp_overlap 2844138 TACAGCGAGAAGAGC CCAGGC AAC GCCTCG TTTTACTACTCCTTC AHA_2554 2843458 - 2844642 + | hypothetical protein TERM 3273 2844707 - 2844691 - T 100 -15.1 -4.72272 | CCCCGCCATCAAAAA CCCCGGC CAG GCCGGGG TAACAACACTGTGCT AHA_2555 2845688 - 2844744 - | hypothetical protein TERM 3274 2846894 - 2846929 + r 100 -14.8 -4.46514 | opp_overlap 2846896 TCACTCTTCTTGAGA TAGCCCCCTGACAGAA TATA TTCTGCCGGGGGGTTA TTTATTTCGCTGCCT AHA_2556 2849723 - 2846931 - | iron-sulfur cluster-binding protein TERM 3275 2848794 - 2848779 - G 81 -11.8 -3.86015 | CAGCGTCTTGATAAA GCCCGG CAAG CCGGGC TTGCCCGCGACCGAG TERM 3276 2848839 - 2848854 + g 78 -6.8 -4.56597 | gap 1, overlap 2848839 2848838 ATCCATCAGCTCCAC CGCCGCC ACC GGC-GCG TTTTTCAGGCGCGAG AHA_2557 2850367 - 2849723 - | hypothetical protein AHA_2558 2851805 - 2850369 - | iron-sulfur cluster binding protein AHA_2559 2852589 - 2851798 - | Fe-S oxidoreductase TERM 3277 2852356 - 2852400 + g 70 -12 -3.14211 | opp_overlap 2852326 2852364 CACCGGCCAGGGCTC GGGGAAGAGCGCCATCTGGC TTTGC GCCACCTGGCGCGCCTCCTC TTCATGGCCCGAGGT AHA_2560 2854300 - 2852603 - | lactate permease (LctP) family protein TERM 3278 2852945 - 2852912 - G 91 -15.3 -3.86346 | gap 1 GGAGCCGGCGATAAA GGCCCCCAGCG-CACC GAT GGTGGCGCTCAGGGCC GGGAAGAACTCCCCC AHA_2561 2854361 - 2855338 + | transcriptional regulator TERM 3279 2855352 - 2855373 + F 86 -6.5 -5.00616 | GACGGAGGATGGCGA GCATCCTGT GCCA ACAGGGGGC TTTTTTGACCCGGGC TERM 3280 2855567 - 2855593 + G 73 -8.6 -4.0371 | CTGGAGCAGCTCTGT CAGGCCCAGGGG CGC TCCATGGGGCTG TTTCTCTCCGAGCTC AHA_2562 2855405 - 2855719 + | arylsulfate sulfotransferase TERM 3281 2855748 - 2855774 + T 95 -15.1 -3.36452 | opp_overlap 2855749, overlap 2855749 CTTCCTCATGAAAAA AGGGCCGCAGC ACCGG GCTGCGGCCCC TTCCTATTCCACGCT TERM 3282 2855773 - 2855749 - T 100 -18.6 -5.14563 | opp_overlap 2855749 2855748 TTCCTCATGAAAAAA GGGCCGCAGC ACCGG GCTGCGGCCC CTTCCTATTCCACGC TERM 3283 2855749 - 2855773 + T 100 -18.6 -2.6155 | opp_overlap 2855749, overlap 2855748 TTCCTCATGAAAAAA GGGCCGCAGC ACCGG GCTGCGGCCC CTTCCTATTCCACGC AHA_2563 2856191 - 2855796 - | lactoylglutathione lyase AHA_2564 2857127 - 2856345 - | dihydrolipoyllysine-residue acetyltransferase component of acetoincleaving system AHA_2565 2857234 - 2857590 + | hypothetical protein AHA_2566 2857587 - 2858075 + | acetyltransferase AHA_2567 2858109 - 2858465 + | hypothetical protein TERM 3284 2858492 - 2858472 - T 75 -11.2 -3.4178 | ATCAGCTGATCACAA TGGCGAAC GCCCA GTTCGCCA CTCCCCCGCAAATTT TERM 3285 2858552 - 2858530 - T 88 -9.8 -4.49756 | opp_overlap 2858530 2858527 2858546 CCGCAAACATGAAAA GGGCCGCC TTCAACG GGCAGCCC TGCTTGCTATCATTT TERM 3286 2858736 - 2858763 + T 100 -12.8 -4.7629 | opp_overlap 2858742, overlap 2858742 CCTGACAAAGCCCGA TAAAAAGGCCGC AAAC GCGGCCTTTTTC TTTTTCAATTAATGA TERM 3287 2858757 - 2858742 - T 100 -11.8 -4.86033 | opp_overlap 2858742 2858736 AAAGCCCGATAAAAA GGCCGC AAAC GCGGCC TTTTTCTTTTTCAAT TERM 3288 2858742 - 2858757 + T 100 -11.8 -5.63236 | opp_overlap 2858742, overlap 2858736 AAAGCCCGATAAAAA GGCCGC AAAC GCGGCC TTTTTCTTTTTCAAT msrA 2859438 - 2858806 - | methionine-S-sulfoxide reductase TERM 3289 2859478 - 2859461 - H 76 -5.5 -4.82901 | overlap 2859462 GTCCTTGTATAAAAA CCTGTGC GATC GCACAGC TGACGAAAAGGAATA argA 2859698 - 2861026 + | N-acetylglutamate synthase TERM 3290 2861041 - 2861055 + F 74 -4.2 -4.7657 | AGTCATTGATTTTAC GTTGGC TTG GCTGAC TTTTTGAACTTTTTC AHA_2570 2861448 - 2862800 + | aspartate kinase III TERM 3291 2862848 - 2862829 - T 100 -15 -4.58585 | opp_overlap 2862829 CATGGAAATAATAAA GAGGGGCC GGCT GGCCCCTC TTTTTATTTAGGGTG TERM 3292 2862829 - 2862848 + T 100 -15 -5.28942 | opp_overlap 2862829 CATGGAAATAATAAA GAGGGGCC GGCT GGCCCCTC TTTTTATTTAGGGTG AHA_2571 2863983 - 2862895 - | hypothetical protein TERM 3293 2864045 - 2864059 + H 74 -10 -3.72893 | opp_overlap 2864045 CAGGCCAGTGGCAAA GCGTCA TGA TGACGC TTTCATCACAGAATG TERM 3294 2864059 - 2864045 - H 71 -10 -3.57462 | opp_overlap 2864045 CAGGCCAGTGGCAAA GCGTCA TGA TGACGC TTTCATCACAGAATG TERM 3295 2866387 - 2866345 - g 72 -14 -2.79183 | overlap 2866384 GCCAGCTCTATCAGA TGGGCCAGGCCACTCGCCAG CTG CTGGCGGGCGACATGACCCC CATCCCGGATCTGGC AHA_2572 2864238 - 2866499 + | sulfatase TERM 3296 2866551 - 2866524 - T 100 -18.6 -2.69151 | opp_overlap 2866524 2866528, overlap 2866528 TCGCGGGACAGATGA CAAAGAGGTCGC CCAG GCGACCTCTTTG TTTATTTGCCTATCC TERM 3297 2866524 - 2866551 + T 100 -18.6 -4.48299 | opp_overlap 2866524 2866528, overlap 2866528 TCGCGGGACAGATGA CAAAGAGGTCGC CCAG GCGACCTCTTTG TTTATTTGCCTATCC TERM 3298 2866547 - 2866528 - T 100 -13.6 -4.04318 | opp_overlap 2866524 2866528, overlap 2866524 GGGACAGATGACAAA GAGGTCGC CCAG GCGACCTC TTTGTTTATTTGCCT TERM 3299 2866528 - 2866547 + T 100 -13.6 -4.7923 | opp_overlap 2866528 2866524, overlap 2866524 GGGACAGATGACAAA GAGGTCGC CCAG GCGACCTC TTTGTTTATTTGCCT AHA_2573 2867602 - 2866589 - | microcin immunity protein TERM 3300 2867569 - 2867555 - G 100 -4.2 -5.64274 | opp_overlap 2867565 2867566, overlap 2867556 2867557 GGAGGGAGAAAAAAA GCCGAT GGT ATCGCC GGGCCTGAGCCCAGG AHA_2574 2867868 - 2868710 + | alpha/beta fold family hydrolase AHA_2575 2868909 - 2869967 + | anaerobic sulfite reductase subunit A AHA_2576 2869969 - 2870808 + | anaerobic sulfite reductase subunit B AHA_2577 2870820 - 2871830 + | anaerobic sulfite reductase subunit C AHA_2578 2872003 - 2873394 + | siroheme synthase TERM 3301 2873433 - 2873458 + T 100 -20.5 -4.65916 | opp_overlap 2873433 AGACCAGTAAAAAAA GCGACGCAGGC CATG GCCTGCGTCGC TTTTATTGGAATGGG TERM 3302 2873458 - 2873433 - T 100 -20.5 -5.56568 | opp_overlap 2873433 AGACCAGTAAAAAAA GCGACGCAGGC CATG GCCTGCGTCGC TTTTATTGGAATGGG AHA_2579 2874085 - 2873483 - | putative lipoprotein TERM 3303 2874309 - 2874331 + r 74 -10.6 -3.53012 | opp_overlap 2874310, overlap 2874310 CAGCACCCACAAAAA AGCCGATAAC CAG GTTATCGGCC TTTGCCAAAGCAGGG TERM 3304 2874310 - 2874330 + r 83 -14.1 -2.71712 | opp_overlap 2874310, overlap 2874309 AGCACCCACAAAAAA GCCGATAAC CAG GTTATCGGC CTTTGCCAAAGCAGG TERM 3305 2874330 - 2874310 - R 100 -14.1 -5.28778 | opp_overlap 2874310 2874309 AGCACCCACAAAAAA GCCGATAAC CAG GTTATCGGC CTTTGCCAAAGCAGG AHA_2580 2874675 - 2874358 - | hypothetical protein TERM 3306 2874959 - 2874996 + G 83 -15.6 -3.14132 | opp_overlap 2874992 TTGCCTTTCCCTAGG GTGAGTCTGTCCCGGC ACCAGC GCGGGGACAGACCCAC TTCGTCACGAGGAGA TERM 3307 2875295 - 2875275 - g 83 -7.5 -4.56597 | overlap 2875279 CCCTCGCGGTAAAAA TCGAGGCCT ATC AGGCCCAGA TGATGAACCAGGCAC AHA_2581 2874944 - 2876233 + | hypothetical protein AHA_2582 2876258 - 2877337 + | hypothetical protein TERM 3308 2877345 - 2877365 + F 100 -18.3 -3.72576 | opp_overlap 2877339 2877340 CCGCCTAAACCCCGG GAGGGCGGC CTG GCCGCCCTC TTTCATAAGGAGACC AHA_2583 2877383 - 2878183 + | hypothetical protein TERM 3309 2878202 - 2878221 + T 100 -13.6 -4.77036 | opp_overlap 2878202 CCCCGCAACAAAAAA GGAGAGGC CAAG GCCTCTCC TTTTTCATAGTGCGC TERM 3310 2878221 - 2878202 - T 100 -13.6 -5.4505 | opp_overlap 2878202 CCCCGCAACAAAAAA GGAGAGGC CAAG GCCTCTCC TTTTTCATAGTGCGC AHA_2584 2879581 - 2878289 - | NADH dehydrogenase TERM 3311 2879612 - 2879628 + r 87 -13.7 -3.2827 | opp_overlap 2879612 2879607 TTCCATTAAAGCGAA GGGAGCC ATC GGCTCCC TTGATAGTTGAATCC TERM 3312 2879628 - 2879612 - R 87 -13.7 -3.30701 | opp_overlap 2879612, overlap 2879607 TTCCATTAAAGCGAA GGGAGCC ATC GGCTCCC TTGATAGTTGAATCC AHA_2585 2880295 - 2879660 - | hypothetical protein TERM 3313 2880142 - 2880131 - G 71 -5.8 -4.27441 | ATCATCATCAATAAA CTGC AACT GCAG CACTTTCTCGTGATT TERM 3314 2880335 - 2880319 - H 81 -13.7 -2.97667 | overlap 2880316 2880321 TTACGGATGAAACCA GACGGCG CGC CGCCGTC CACTGCCTGCTATCA TERM 3315 2880405 - 2880381 - H 81 -12.1 -3.61609 | overlap 2880375 2880400 CGACCGAAATGATAA CCGGGCTACCA ATC TGAAAGCCCGG CCCCATCGGCTGGCA TERM 3316 2880446 - 2880400 - H 79 -11.5 -3.67976 | gap 1, overlap 2880381 2880375 GCTACCAATCTGAAA GCCCGGCCCCATCGGCTGGCAA ACGA TTGTCAGCCGTCGGCGC-GAGC AAGCGTGATCCCGCC TERM 3317 2880624 - 2880604 - H 71 -10.4 -3.18582 | opp_overlap 2880604, overlap 2880605 GACCCCATCCATGAA CGGGGCAG CCAGC CTGCCCCA TCTTGCCCGGCCAGA TERM 3318 2880623 - 2880605 - H 71 -11.7 -2.50935 | opp_overlap 2880604, overlap 2880604 ACCCCATCCATGAAC GGGGCAG CCAGC CTGCCCC ATCTTGCCCGGCCAG AHA_2586 2880669 - 2882084 + | putative xanthine permease TERM 3319 2882090 - 2882116 + T 100 -25.2 -3.90112 | opp_overlap 2882090 CGCCCCATAAAAAAA CCGCCGGGCAGC GTG GCTGCCCGGCGG TTTCATTCCGCAAGC TERM 3320 2882116 - 2882090 - T 100 -25.2 -5.60993 | opp_overlap 2882090 CGCCCCATAAAAAAA CCGCCGGGCAGC GTG GCTGCCCGGCGG TTTCATTCCGCAAGC AHA_2587 2883945 - 2882137 - | oligoendopeptidase F TERM 3321 2882885 - 2882911 + g 70 -8 -4.10161 | gap 1 CCGGTGCGCCGGTTG GGGGTGGG-CG CGGCAT CGATCCACCCC TTTTCGGCCATCATG TERM 3322 2883968 - 2883980 + r 76 -10.5 -3.65351 | TCGTCATCAGGTTGC GGGGC CGA GCCCC TTTGAATGCGCGTGG TERM 3323 2884037 - 2884027 - R 72 -2.4 -4.93296 | CCACCAGGATAAAAA CCGC CGG GCTG CCTACACCAGCCGCT AHA_2588 2885817 - 2884039 - | oligoendopeptidase F TERM 3324 2884730 - 2884714 - G 70 -7.2 -4.02132 | overlap 2884717 CTCGAAAGTGAGAAA CACCCG CGGCT CGGGCG GATCGGCATACTCGG TERM 3325 2885916 - 2885892 - R 87 -13.6 -3.24747 | gap 1 GCCGGATAGTACGAA GGGGGC-AGGC CCTT GCCTAGCCCCC ATCCGAGGCAACAGA AHA_2589 2886916 - 2885999 - | inner membrane protein YedI TERM 3326 2887331 - 2887273 - g 78 -6.4 -4.56597 | CTGGTGGGGCAAAAA CAGCGACACCGACGCCCTGCTCGCCA GCCACTT CGGTGAACTGGCCGCCGCAGCCGCCG CCGGCGAGCTCGCCC TERM 3327 2887350 - 2887379 + G 79 -13.5 -3.45023 | gap 1, overlap 2887334 GCGAGCTCGCCCACT GGGCCGACGCGGCC GAG GGCCG-GCTGGCCC TTATCCTGCTGCTGG TERM 3328 2887498 - 2887522 + G 88 -7.8 -4.87665 | gap 1, overlap 2887502 2887507 TCTGGAGGCGGATCT GGCGCTGCCCC CGCT GGGGCGG-GTC TTTTTCTACCTGCCG TERM 3329 2887507 - 2887520 + G 76 -9.5 -4.06182 | overlap 2887502 2887498 GGATCTGGCGCTGCC CCCGC TGGG GCGGG TCTTTTTCTACCTGC AHA_2590 2887175 - 2887777 + | hypothetical protein TERM 3330 2887805 - 2887820 + T 91 -11.8 -4.18494 | opp_overlap 2887805 ATGCGCATAAAAAAA CGGGCC CGAG GGCCCG TTTTGCATGGGAATG TERM 3331 2887820 - 2887805 - T 100 -11.8 -5.61596 | opp_overlap 2887805 ATGCGCATAAAAAAA CGGGCC CGAG GGCCCG TTTTGCATGGGAATG secF-2 2888849 - 2887842 - | protein-export membrane protein SecF secD-2 2890722 - 2888869 - | protein-export membrane protein SecD TERM 3332 2889108 - 2889089 - G 81 -7.8 -4.41494 | GAGCGGTAACCAAAA TCGATGGC GTTG GCCAGCGA GCCCCCTTCCCGCAG TERM 3333 2890198 - 2890222 + g 74 -2.7 -4.84274 | overlap 2890218 GCGCGCCTCGCGAAA CTGGGTGCGCA GCA TGTCCACCAGG TTTTTGGTCTGGTTG AHA_2593 2891325 - 2890819 - | hypothetical protein AHA_2594 2892249 - 2891392 - | hypothetical protein AHA_2595 2892982 - 2892311 - | hypothetical protein TERM 3334 2892561 - 2892549 - G 70 -10.5 -3.57144 | CTGGCCACCTCGAAA CCGGG ATG CCCGG CGGCGCCATACTCCC TERM 3335 2893040 - 2893010 - R 89 -8.9 -4.56597 | opp_overlap 2893010 2893002, overlap 2893011 2893012 2893014 GCCCTGGCGCAAAAA GTGACTGCGCCCC GAGGG GAGGCGCAGTCGA TAGTTGCAGTTGGTC TERM 3336 2893039 - 2893011 - R 80 -12.4 -3.33744 | opp_overlap 2893010 2893002, overlap 2893010 2893012 2893014 CCCTGGCGCAAAAAG TGACTGCGCCCC GAGGG GAGGCGCAGTCG ATAGTTGCAGTTGGT TERM 3337 2893038 - 2893012 - R 85 -15.9 -2.60032 | opp_overlap 2893010 2893002, overlap 2893011 2893010 2893014 CCTGGCGCAAAAAGT GACTGCGCCCC GAGGG GAGGCGCAGTC GATAGTTGCAGTTGG TERM 3338 2893036 - 2893014 - R 76 -12.7 -2.83903 | opp_overlap 2893010 2893002, overlap 2893012 2893011 2893010 TGGCGCAAAAAGTGA CTGCGCCCC GAGGG GAGGCGCAG TCGATAGTTGCAGTT AHA_2596 2893751 - 2893155 - | hypothetical protein AHA_2597 2894149 - 2893751 - | hypothetical protein TERM 3339 2893969 - 2893985 + g 72 -4.3 -4.63218 | overlap 2893970 TGGCCGCCGCCACAT TGACCTG CAA CAGGCCG TTTTGTTCGCGCCGG AHA_2598 2895564 - 2894218 - | TPR domain-containing protein TERM 3340 2894714 - 2894696 - G 81 -10.2 -4.12942 | overlap 2894687 2894686 GTAAAGGTGCGAAAA TCGCCGCC GGA GGTGGCGA TGGGCAGCGGCAGAA TERM 3341 2894800 - 2894821 + g 74 -2.1 -4.94992 | gap 1, opp_overlap 2894769, overlap 2894800 CTGATCCTTGGCCAA GG-GCGGCGC CTT GCGACCCACC TTTTTCTCGGTTTCG AHA_2599 2895989 - 2895639 - | HIT family hydrolase TERM 3342 2896144 - 2896130 - g 72 -4.2 -4.60041 | overlap 2896132 AGTTATTGTTAAAAA TACCGA TAG TCGGAA GACGTCTGCCGACGT TERM 3343 2897530 - 2897503 - g 70 -7.6 -4.07133 | gap 1 GATCTGGAGAAACAA CGCCAGGAGACCG CCT CGGTCGCC-GCCG CCATGACCCAGATGG AHA_2600 2896087 - 2898252 + | methyl-accepting chemotaxis protein TERM 3344 2898302 - 2898277 - T 100 -20.5 -2.78216 | opp_overlap 2898277, overlap 2898280 CAGCCCCAGCAACGA CAAGGCCCCGC AGAT GCGGGGCCTTG TTTTTTACTGGCAAG TERM 3345 2898277 - 2898302 + T 100 -20.5 -5.14563 | opp_overlap 2898277 2898280 CAGCCCCAGCAACGA CAAGGCCCCGC AGAT GCGGGGCCTTG TTTTTTACTGGCAAG TERM 3346 2898299 - 2898280 - T 100 -16.4 -3.54029 | opp_overlap 2898277, overlap 2898277 CCCCAGCAACGACAA GGCCCCGC AGAT GCGGGGCC TTGTTTTTTACTGGC AHA_2601 2899146 - 2898328 - | hypothetical protein AHA_2602 2899292 - 2900635 + | dihydroorotase TERM 3347 2900672 - 2900697 + F 100 -16.1 -5.00884 | opp_overlap 2900675, overlap 2900673 CACCACAGCGCCATC ACAGGCCGCCC ACCC GGGCGGCCTGA TTTTTTGCAGCCGCT TERM 3348 2900673 - 2900696 + F 100 -19.6 -3.60048 | opp_overlap 2900675, overlap 2900672 ACCACAGCGCCATCA CAGGCCGCCC ACCC GGGCGGCCTG ATTTTTTGCAGCCGC TERM 3349 2900694 - 2900675 - f 90 -16.4 -2.79501 | opp_overlap 2900673 2900672 CACAGCGCCATCACA GGCCGCCC ACCC GGGCGGCC TGATTTTTTGCAGCC TERM 3350 2900708 - 2900732 + F 91 -9.9 -4.59853 | CCTGATTTTTTGCAG CCGCTCACGGC CCC GCAATGAGCGG TTTTTCGGCGATTGG TERM 3351 2900980 - 2900959 - f 100 -14.5 -3.8709 | opp_overlap 2900959 AAATTCCCCGAGAAA GGCCTTGTC AGAC GACAAGGCC TTTTCTTTTTGGCGC TERM 3352 2900959 - 2900980 + F 100 -14.5 -5.26119 | opp_overlap 2900959 AAATTCCCCGAGAAA GGCCTTGTC AGAC GACAAGGCC TTTTCTTTTTGGCGC AHA_2604 2901009 - 2901560 + | hypothetical protein TERM 3353 2902658 - 2902630 - g 71 -8.8 -3.85698 | TTCGGTTGTGACAAA CGCATCGCCAGC TTCGT GCTGCCGATGGG CTACTCCTTCAACCT AHA_2605 2901652 - 2903025 + | proton/sodium-glutamate symport protein TERM 3354 2903049 - 2903068 + T 100 -16.4 -5.76633 | opp_overlap 2903049 TCACCTCCATCAAAA CGGCCCGC AGAT GCGGGCCG TTTTTTTATGTCTCA TERM 3355 2903068 - 2903049 - T 100 -16.4 -4.26076 | opp_overlap 2903049 TCACCTCCATCAAAA CGGCCCGC AGAT GCGGGCCG TTTTTTTATGTCTCA AHA_2606 2903556 - 2903101 - | hypothetical protein alr 2903747 - 2904973 + | alanine racemase TERM 3356 2904990 - 2905017 + T 76 -12.8 -2.7782 | opp_overlap 2904995, overlap 2904995 CCAGTCTTTGCCATA AAAAAGGGCTCC CGCG GGAGCCCTTTTG CTTGTTCGCCAATTA TERM 3357 2905012 - 2904995 - T 100 -12.7 -5.24129 | opp_overlap 2904995 2904990 CTTTGCCATAAAAAA GGGCTCC CGCG GGAGCCC TTTTGCTTGTTCGCC TERM 3358 2904995 - 2905012 + T 100 -12.7 -4.56133 | opp_overlap 2904995, overlap 2904990 CTTTGCCATAAAAAA GGGCTCC CGCG GGAGCCC TTTTGCTTGTTCGCC AHA_2608 2905974 - 2905030 - | Alx protein TERM 3359 2906001 - 2906021 + r 73 -9 -3.84451 | gap 1, opp_overlap 2906001 CCAAAAACGACAAAA CCCACGACC GAGA GG-CGTGGG TTTGCGTTTGGAGCA TERM 3360 2906021 - 2906001 - R 93 -9 -4.72556 | gap 1, opp_overlap 2906001 CCAAAAACGACAAAA CCCACGACC GAGA GG-CGTGGG TTTGCGTTTGGAGCA TERM 3361 2906060 - 2906043 - R 72 -11.3 -3.02471 | opp_overlap 2906041 TTTGGAGCAGATACA CCTTGCC TCTC GGCAAGG TCTCACTTACAGCCG TERM 3362 2906229 - 2906251 + r 100 -16.3 -3.62572 | opp_overlap 2906229 CCCGGCTGCAAAAAA CAGGGCGCC ACCCG GGCGCCCTG TTTCGCCTGCTCATC TERM 3363 2906251 - 2906229 - R 100 -16.3 -5.00616 | opp_overlap 2906229 CCCGGCTGCAAAAAA CAGGGCGCC ACCCG GGCGCCCTG TTTCGCCTGCTCATC AHA_2609 2907263 - 2906268 - | oligopeptide ABC transporter, ATP-binding protein OppF TERM 3364 2907172 - 2907192 + g 71 -11.1 -3.43217 | opp_overlap 2907134, overlap 2907151 GCCTTCAGGGCGGAG GGTTTGGCC CAG GGCCAGGCC TTGTCACTCTTGATG oppD 2908244 - 2907264 - | oligopeptide transporter ATP-binding component AHA_2611 2909256 - 2908345 - | oligopeptide ABC transporter, permease protein OppC TERM 3365 2909212 - 2909235 + g 73 -3.1 -4.78149 | gap 1, overlap 2909213 CACTTCCACTTGCTG GGCGAACGCC TCGAC GGC-TTCGCG TTTTTCAGTTGTGAC oppB 2910191 - 2909271 - | oligopeptide transporter permease TERM 3366 2910238 - 2910263 + r 90 -10.3 -4.30987 | opp_overlap 2910241, overlap 2910239 2910241 GGTCGCGGTTGTAAT AAAGGCCCGCC ATCC GGCGGGCCTGC TTTGTTATGCGACGT TERM 3367 2910239 - 2910262 + r 87 -13.8 -3.1811 | opp_overlap 2910241, overlap 2910238 2910241 GTCGCGGTTGTAATA AAGGCCCGCC ATCC GGCGGGCCTG CTTTGTTATGCGACG TERM 3368 2910241 - 2910260 + r 100 -16.4 -3.15008 | opp_overlap 2910241, overlap 2910239 2910238 CGCGGTTGTAATAAA GGCCCGCC ATCC GGCGGGCC TGCTTTGTTATGCGA TERM 3369 2910260 - 2910241 - R 100 -16.4 -4.15044 | opp_overlap 2910241 2910239 2910238 CGCGGTTGTAATAAA GGCCCGCC ATCC GGCGGGCC TGCTTTGTTATGCGA AHA_2613 2911908 - 2910289 - | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 3370 2912167 - 2912149 - R 100 -11.7 -5.44198 | AAGAAACAATAAAAA GCCGGTC ACGAG GACCGGC TCCAACAAAACAGAC AHA_2614 2912862 - 2912188 - | hypothetical protein AHA_2615 2912997 - 2913725 + | hypothetical protein TERM 3371 2913757 - 2913730 - f 91 -9.8 -4.58283 | opp_overlap 2913730 2913720 TAACTGCTTGAAAAA TGGTGCGTGAGC CCAT GTTCACGCCCCA TTCATCCCGCTTCTG TERM 3372 2913730 - 2913757 + F 78 -12 -3.17219 | opp_overlap 2913730, overlap 2913720 TAACTGCTTGAAAAA TGGTGCGTGAGC CCAT GTTCACGCCCCA TTCATCCCGCTTCTG AHA_2616 2914021 - 2916696 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 3373 2916717 - 2916736 + F 100 -16.4 -5.76237 | opp_overlap 2916710 TGAACCGACTCGAGA GCCCGCGC ACAT GCGCGGGC TTTTTTGTTTGTCTA TERM 3374 2916869 - 2916885 + G 73 -3.6 -4.68724 | opp_overlap 2916855 ATCCATCTTCCCACG GGATGG ACCAA CCACCC TTTTATGTTCAATGC TERM 3375 2917765 - 2917745 - g 71 -6.1 -4.30719 | overlap 2917746 CTGTCGCAGAAGAAA TTCGACCAG GAT CTGGTCAAG CTGCTGATCAAGGTG AHA_2617 2916806 - 2918041 + | HD domain-containing protein TERM 3376 2918042 - 2918066 + F 91 -17.3 -2.71011 | TATTTTGCCTTCTGA GTTATCCCCAG AAG CTGGGGATAAC TCATTGGACAAACCT TERM 3377 2918157 - 2918136 - f 100 -15.1 -5.28778 | ACCATGGATAAAAAA CGCCCAGCC AAGG GGCCGGGCG GAGCATGCCACCTCC AHA_2618 2918395 - 2920065 + | sensor histidine kinase AHA_2619 2920123 - 2920827 + | putative two-component response-regulatory protein YehT TERM 3378 2921091 - 2921068 - g 76 -8.8 -4.13945 | overlap 2921037 2921069 AGCCGGAGCTGAAAA CCCCCGCCAT CACC ATGGCGGACG GGGTGGACTATGTCC AHA_2620 2920968 - 2922389 + | CstA protein TERM 3379 2922429 - 2922413 - f 100 -9.4 -5.07053 | opp_overlap 2922413, overlap 2922403 AACCATGTCAAAAAA GGAGCC GTCAG GGCTCC TTTTTTTGCAGAACA TERM 3380 2922413 - 2922429 + F 100 -9.4 -5.40072 | opp_overlap 2922413 2922403 AACCATGTCAAAAAA GGAGCC GTCAG GGCTCC TTTTTTTGCAGAACA AHA_2621 2922679 - 2923017 + | inner membrane protein YiaW AHA_2622 2923021 - 2924058 + | HlyD family secretion protein TERM 3381 2924075 - 2924103 + F 100 -26.1 -5.00616 | opp_overlap 2924064 CGAAGACGTCGTCGC CAGCGGGCCGGCA CCA TGCCGGCCCGCTG TTTTTTGGCGCCAAG TERM 3382 2925007 - 2924976 - g 71 -13.8 -2.64155 | gap 1, overlap 2924973 2924972 2925000 TGCCCGCGAAATTCA CGGCCTGCTGAGC GCCAGAA GC-CAGCAGGCCG CCCTCATCACCGGCG TERM 3383 2925716 - 2925726 + G 71 -8.2 -3.9122 | GATTTCACTCCCAGG GCGC ACG GCGC TTGTTTCAACAGGTC AHA_2623 2924173 - 2925933 + | putative helicase, ATP-dependent TERM 3384 2927187 - 2927168 - g 75 -3.5 -4.87665 | overlap 2927171 CTTCATCCAGAAAAA TGATGCC GAGCTT GGCCTCA TCAAGCTGCTGCCAA dacB 2926065 - 2927501 + | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase grxA 2927644 - 2927907 + | glutaredoxin 1 TERM 3385 2927926 - 2927941 + T 100 -11.8 -5.1861 | opp_overlap 2927926 CACCTTGTGAAAAAA GGCGCC ATCA GGCGCC TTTTTTCATGGTCAA TERM 3386 2927941 - 2927926 - T 100 -11.8 -5.0133 | opp_overlap 2927926 CACCTTGTGAAAAAA GGCGCC ATCA GGCGCC TTTTTTCATGGTCAA AHA_2626 2928319 - 2927966 - | hypothetical protein TERM 3387 2928223 - 2928240 + g 76 -5.5 -4.56597 | GCGCCAGCATGGCGC GCAGACC ACAT GCTCTGC TTTTTGGGCCGGCGC TERM 3388 2929666 - 2929638 - g 86 -7.3 -4.77036 | CTGCAGCAGGAAAAA TTGCTGCTGGTGC AGG GCACCGGCTTCAA CTGGCCGGCACCGGA AHA_2627 2928558 - 2929772 + | aminotransferase AlaT TERM 3389 2929784 - 2929811 + T 79 -11.4 -3.68394 | opp_overlap 2929790, overlap 2929790 GTAAGCAAGGCTCAT GAAAAAGGCTCC CGCG GGAGCCTTTTTG TTGTCTGTCATTTTC TERM 3390 2929805 - 2929790 - T 100 -10.4 -4.73388 | opp_overlap 2929790 2929784 AAGGCTCATGAAAAA GGCTCC CGCG GGAGCC TTTTTGTTGTCTGTC TERM 3391 2929790 - 2929805 + T 100 -10.4 -5.27206 | opp_overlap 2929790, overlap 2929784 AAGGCTCATGAAAAA GGCTCC CGCG GGAGCC TTTTTGTTGTCTGTC AHA_2628 2931313 - 2929838 - | arginine/ornithine antiporter TERM 3392 2931406 - 2931423 + r 71 -4.8 -4.56597 | opp_overlap 2931406 2931401 2931408, overlap 2931408 TCGCGGATAATAAAA TTCCGC GACTTA GCGGGA TTTTTGCCAAAAAAA TERM 3393 2931439 - 2931458 + r 100 -12.8 -4.28774 | opp_overlap 2931439 2931441 TTTTTGCCAAAAAAA CGGGGCCC CGCG GGGCCCTG TTTTCACTTGGGTCA TERM 3394 2931458 - 2931439 - R 100 -10.6 -5.40072 | opp_overlap 2931439, overlap 2931441 TTTTTGCCAAAAAAA CGGGGCCC CGCG GGGCCCTG TTTTCACTTGGGTCA TERM 3395 2931456 - 2931441 - R 75 -11.8 -2.89655 | opp_overlap 2931439, overlap 2931439 TTTGCCAAAAAAACG GGGCCC CGCG GGGCCC TGTTTTCACTTGGGT AHA_2629 2932670 - 2931477 - | trans-2-enoyl-CoA reductase TERM 3396 2932410 - 2932442 + g 78 -6.9 -4.56597 | overlap 2932408 AGCGGAGTTGTACCA GCCGGCGGTGGCA GTCTTGG TCTCGCTGCCGGC TTTTTCGAAGAAGAC AHA_2630 2932995 - 2934293 + | methyl-accepting chemotaxis protein TERM 3397 2934332 - 2934311 - Tf 100 -15.9 -3.40403 | opp_overlap 2934311, overlap 2934294 GCCTCGCCATCACAA CACACGGGG CAGG CCCCGTGTG TTTTATCTTCCGGTC TERM 3398 2934311 - 2934332 + TF 100 -15.9 -4.67608 | opp_overlap 2934294 2934311 GCCTCGCCATCACAA CACACGGGG CAGG CCCCGTGTG TTTTATCTTCCGGTC AHA_2631 2934551 - 2934354 - | hypothetical protein AHA_2632 2934330 - 2934536 + | hypothetical protein AHA_2633 2935642 - 2934602 - | hypothetical protein TERM 3399 2935233 - 2935210 - GfH 81 -13.2 -2.91735 | gap 1, opp_overlap 2935212, overlap 2935201 2935213 GCAACAGGGCACAGA CCA-TGCCGGC CTG GCCGGCACTGG TGTAGCGCAGGGCGT TERM 3400 2935229 - 2935213 - GfH 78 -13.7 -2.69977 | opp_overlap 2935212, overlap 2935210 2935201 ACAGGGCACAGACCA TGCCGGC CTG GCCGGCA CTGGTGTAGCGCAGG rnfA 2935611 - 2936192 + | electron transport complex, RnfABCDGE type, A subunit rnfB 2936197 - 2936760 + | electron transport complex protein RnfB TERM 3401 2938484 - 2938468 - g 72 -7.9 -4.18934 | CAGGATGCCAAGAAA GCCGCCA TTG CAGCGGC GCTGGCCCGTGCCAA TERM 3402 2938670 - 2938642 - g 84 -3.8 -5.22039 | overlap 2938666 GCCAAAGCCAAAAAA GCCGCCAGCA-CGC AAG GCGATGA-AGCGGC TGCGGATATTCCTGC TERM 3403 2939234 - 2939221 - g 79 -9.5 -4.1822 | GCGGATCCCAAGAAA GCGGC CATT GCCGC CGCCGTGGCCCGTGC rnfC 2936767 - 2939322 + | electron transport complex, RnfABCDGE type, C subunit rnfD 2939326 - 2940378 + | electron transport complex, RnfABCDGE type, D subunit TERM 3404 2940714 - 2940699 - g 70 -10.4 -3.53811 | GCTATGCGCTGGAAA CCGTCG CCCC CGACGG CTACAGTGGGGCCAT TERM 3405 2940995 - 2940976 - g 75 -12.2 -3.62522 | CAAGGCGGTGAAGAA CCTGTTGC TGCT GCAACAGG AGCACCCAGAGTTGC rnfG 2940413 - 2941045 + | electron transport complex, RnfABCDGE type, G subunit rnfE 2941077 - 2941820 + | electron transport complex, RnfABCDGE type, E subunit nth 2941835 - 2942476 + | endonuclease III gloA 2942609 - 2943022 + | lactoylglutathione lyase TERM 3406 2943071 - 2943044 - T 95 -11.4 -4.58395 | opp_overlap 2943050, overlap 2943050 CTGAGCCCCGAAAAA CAAAAAGAGCGC CAAG GCGCTCTTTTTT ATGGATTCGTTTTCC TERM 3407 2943065 - 2943050 - T 100 -10.4 -5.61881 | opp_overlap 2943050, overlap 2943044 CCCGAAAAACAAAAA GAGCGC CAAG GCGCTC TTTTTTATGGATTCG TERM 3408 2943050 - 2943065 + T 100 -10.4 -5.31456 | opp_overlap 2943044 2943050 CCCGAAAAACAAAAA GAGCGC CAAG GCGCTC TTTTTTATGGATTCG AHA_2642 2943950 - 2943087 - | sodium-type flagellar protein MotY AHA_2643 2945812 - 2944031 - | methyl-accepting chemotaxis transducer TERM 3409 2944088 - 2944115 + g 91 -12 -4.25848 | gap 1, overlap 2944090 GCGCCCCGCCAGCTC CCGCGCC-AGCTG ATC CAGCTCGGCGCTG TTTTGCTGCAGGGTT TERM 3410 2944090 - 2944113 + g 81 -13.2 -3.73042 | gap 1, overlap 2944088 GCCCCGCCAGCTCCC GCGCC-AGCTG ATC CAGCTCGGCGC TGTTTTGCTGCAGGG TERM 3411 2944487 - 2944464 - G 86 -11.7 -4.15565 | gap 1 GCCACCACCGCAAAA CCGCGGCCGG ATTCG CCGG-CGCGG GCCGCCTCGATGGCG TERM 3412 2946082 - 2946108 + H 77 -3.5 -5.06451 | opp_overlap 2946066, overlap 2946084 GGCCAGCGCGCCGAT GGCGGCCGATG AGGGA CAAAGGCCGGC TTTTTTGCCATAATG TERM 3413 2946283 - 2946322 + G 71 -6.2 -4.34402 | opp_overlap 2946283 CCTATACCCTCAAGA TGGACGAGCAGGGCTGGC TCGT GCCCGACCAGATCTTCCA TTTTCATGTCGAGCC rnt 2946090 - 2946812 + | ribonuclease T TERM 3414 2946830 - 2946849 + F 100 -13.6 -4.63932 | opp_overlap 2946814 2946832 ACGCCCCCTTCCCAA GAGGCTGC CACG GCAGCCTC TTTTCTTGCGCCATC AHA_2645 2947060 - 2948382 + | gluconate:H+ symporter (GntP) family protein TERM 3415 2948436 - 2948405 - T 100 -16.8 -3.96932 | gap 1, opp_overlap 2948412, overlap 2948412 AGATAGATGCATAAA CATAAAAGGCGACCC TCA GGGTCGCCTTTT-TG CTGCCTTCATCGCGA TERM 3416 2948412 - 2948430 + T 100 -16 -4.77157 | opp_overlap 2948412 2948405 TGCATAAACATAAAA GGCGACCC TCA GGGTCGCC TTTTTGCTGCCTTCA TERM 3417 2948430 - 2948412 - T 100 -16 -4.84918 | opp_overlap 2948412, overlap 2948405 TGCATAAACATAAAA GGCGACCC TCA GGGTCGCC TTTTTGCTGCCTTCA TERM 3418 2948477 - 2948459 - T 71 -11 -2.94416 | overlap 2948461 CATCGCGATGACATA GAGCCGGA CAA TCCAGCTC GGGCGCCCCTCTCAA TERM 3419 2948707 - 2948729 + T 89 -13.4 -3.65351 | opp_overlap 2948709, overlap 2948709 ACGACGGGCAACAAA AAGGCCGCTC GAT GAGCGGCCTC TTTAGCTAGCAGTCA TERM 3420 2948727 - 2948709 - T 100 -16 -5.07486 | opp_overlap 2948709 2948707 GACGGGCAACAAAAA GGCCGCTC GAT GAGCGGCC TCTTTAGCTAGCAGT TERM 3421 2948709 - 2948727 + T 100 -16 -3.40775 | opp_overlap 2948709, overlap 2948707 GACGGGCAACAAAAA GGCCGCTC GAT GAGCGGCC TCTTTAGCTAGCAGT AHA_2646 2950677 - 2948749 - | ATP-dependent RNA helicase TERM 3422 2950714 - 2950694 - R 74 -3.1 -4.87626 | opp_overlap 2950695 2950697, overlap 2950695 GCGGAATAGCAAAAA GGCGGCGAT TAT AGCGCCACT TTGTTCTGCTGTCTT AHA_2647 2951286 - 2950825 - | esterase YdiI TERM 3423 2951394 - 2951375 - R 100 -9.3 -6.17184 | opp_overlap 2951375 2951377 AGGAGCAAAAAAAAA GATGCCC ACGCAG GGGCATC TTGCATCGAGGTTGA AHA_2648 2951901 - 2951413 - | hypothetical protein AHA_2649 2955056 - 2951901 - | FAD linked oxidase TERM 3424 2955900 - 2955890 - g 73 -8.2 -4.08767 | opp_overlap 2955890 GCCATCTGGCGAAAA GCGG CCG CCGC TTCGATCTCGAACTC AHA_2650 2955130 - 2956056 + | hypothetical protein TERM 3425 2956060 - 2956093 + F 83 -15.3 -2.62263 | gap 1, opp_overlap 2956046 2956045, overlap 2956057 CGCTGGCTGTAAGCC GCAAGGCGGGGCTTGC CTG GCAAGCTCCGCCC-GC TCCTGTCGCCCCGCT AHA_2651 2956369 - 2957904 + | inner membrane protein YoaE TERM 3426 2957950 - 2957932 - f 100 -13.1 -4.60889 | opp_overlap 2957932 AACCATGCTGAAAAA GGGGGCC TTGCG GGCCCCC TTTTTTATTCAGGCG TERM 3427 2957932 - 2957950 + F 100 -13.8 -5.4505 | opp_overlap 2957932 AACCATGCTGAAAAA GGGGGCCT TGC GGGCCCCC TTTTTTATTCAGGCG AHA_2652 2958093 - 2959214 + | morphinone reductase TERM 3428 2959269 - 2959236 - T 95 -14 -3.35679 | gap 2, opp_overlap 2959238 2959239, overlap 2959239 2959241 CCCGCCCAGGCATAA CGAGACGCGCCCACCA TCAC TGGTGGGCGCGT--CG TTTTCTGCCTGTCAT TERM 3429 2959238 - 2959269 + T 100 -20.2 -4.45485 | opp_overlap 2959236 2959239 2959241, overlap 2959239 CGCCCAGGCATAACG AGACGCGCCCACCA TCAC TGGTGGGCGCGTCG TTTTCTGCCTGTCAT TERM 3430 2959268 - 2959239 - T 100 -23.7 -2.8474 | opp_overlap 2959239 2959238, overlap 2959236 2959241 GCCCAGGCATAACGA GACGCGCCCACCA TCAC TGGTGGGCGCGTC GTTTTCTGCCTGTCA TERM 3431 2959239 - 2959268 + T 100 -23.7 -3.26568 | opp_overlap 2959236 2959239 2959241, overlap 2959238 GCCCAGGCATAACGA GACGCGCCCACCA TCAC TGGTGGGCGCGTC GTTTTCTGCCTGTCA TERM 3432 2959266 - 2959241 - T 100 -20.5 -2.97245 | opp_overlap 2959239 2959238, overlap 2959239 2959236 CCAGGCATAACGAGA CGCGCCCACCA TCAC TGGTGGGCGCG TCGTTTTCTGCCTGT add-2 2960322 - 2959303 - | adenosine deaminase AHA_2654 2960537 - 2961286 + | UMP phosphatase TERM 3433 2961437 - 2961447 + G 71 -4.6 -4.46212 | CCCCTGCTGGGCTTT CTGG CGG CCGG TTTTCTGCTCAACGG AHA_2655 2961356 - 2962930 + | glutathione-regulated potassium-efflux system protein KefC TERM 3434 2963011 - 2963029 + F 100 -13.1 -5.28176 | opp_overlap 2963011 2963008 TAAAACGAACAATCA CGGGGCC TGGAT GGCCCCG TTTTTTATCCCTGCC TERM 3435 2963029 - 2963011 - f 81 -13.1 -3.0274 | opp_overlap 2963011, overlap 2963008 TAAAACGAACAATCA CGGGGCC TGGAT GGCCCCG TTTTTTATCCCTGCC AHA_2656 2963056 - 2963424 + | transcriptional regulator TERM 3436 2964919 - 2964907 - g 71 -5.5 -4.28254 | GGGCAAGATCGAAAA GCACA TCC TGCGC GAAGCATTCGAGGAT asnB 2963618 - 2965282 + | asparagine synthetase B TERM 3437 2965311 - 2965336 + F 100 -19.1 -5.00616 | TCCTTTGCCTCAATG CCAAGCCCCTC CTGC GAGGGGCTTGG TTTTTTCCCGCCGAC AHA_2658 2965462 - 2965962 + | hypothetical protein AHA_2659 2966084 - 2966707 + | glutathione S-transferase family protein TERM 3438 2966783 - 2966742 - T 100 -23.7 -3.1247 | opp_overlap 2966744, overlap 2966744 AGTTGGCAGAGTGAA CACGGCAGGCCGGGTCGGG ATGA CCGGGCCCGGCCTGCCGTA TGTCAGGGTTGGGCA TERM 3439 2966781 - 2966744 - T 100 -24.1 -3.12327 | opp_overlap 2966744, overlap 2966742 TTGGCAGAGTGAACA CGGCAGGCCGGGTCGGG ATGA CCGGGCCCGGCCTGCCG TATGTCAGGGTTGGG TERM 3440 2966744 - 2966781 + T 100 -26.3 -2.89742 | opp_overlap 2966744 2966742 TTGGCAGAGTGAACA CGGCAGGCCGGGTCGGG ATGA CCGGGCCCGGCCTGCCG TATGTCAGGGTTGGG maiA 2967487 - 2966786 - | maleylacetoacetate isomerase TERM 3441 2967289 - 2967263 - G 70 -7.8 -3.97947 | GCCATCCACCAGAAA CGGCACCAGCCC CTG GGGGTTGAGCCG GCGATAGGCCTTCTC AHA_2661 2968495 - 2967497 - | fumarylacetoacetate hydrolase family protein hmgA 2969667 - 2968507 - | homogentisate 1,2-dioxygenase TERM 3442 2969570 - 2969560 - G 86 -8.2 -4.56597 | overlap 2969561 GGCCGGCCCGAAAAA GCCG GAG CGGC CCAGTTCGCGCTCAT hppD 2970812 - 2969715 - | 4-hydroxyphenylpyruvate dioxygenase TERM 3443 2970997 - 2971043 + r 79 -11.5 -3.75153 | gap 1 GATTGTGACATTGAG GCCG-CAGCCTTGTGGCACGCT CGGT GGCGCCCCGCAAGGCTGTCAGC TTTGCCTTACAGGGA AHA_2664 2971718 - 2971050 - | hypothetical protein TERM 3444 2971265 - 2971249 - G 78 -5 -4.72272 | overlap 2971250 CCGTGGCAGTAAAAA CGCGGC ATCAG GCCGCC GAGGCGATAGTGCAT AHA_2665 2972374 - 2971715 - | pseudouridine synthase Rlu family protein AHA_2666 2972461 - 2974044 + | GGDEF domain-containing protein TERM 3445 2974085 - 2974062 - T 89 -16.8 -2.64107 | opp_overlap 2974062 2974065, overlap 2974051 2974065 CAAATTCCGACAGCA CAAGGCCACC CGCG GGTGGCCTTG TTGTTGTATGGATGG TERM 3446 2974062 - 2974085 + T 100 -16.8 -3.8969 | opp_overlap 2974051 2974062 2974065, overlap 2974065 CAAATTCCGACAGCA CAAGGCCACC CGCG GGTGGCCTTG TTGTTGTATGGATGG TERM 3447 2974065 - 2974082 + T 93 -12.7 -4.06864 | opp_overlap 2974062 2974051 2974065, overlap 2974062 ATTCCGACAGCACAA GGCCACC CGCG GGTGGCC TTGTTGTTGTATGGA TERM 3448 2974082 - 2974065 - T 85 -12.7 -3.4678 | opp_overlap 2974065 2974062, overlap 2974062 2974051 ATTCCGACAGCACAA GGCCACC CGCG GGTGGCC TTGTTGTTGTATGGA AHA_2667 2975663 - 2974110 - | aerotaxis receptor Aer AHA_2668 2976507 - 2975821 - | virulence protein TERM 3449 2976484 - 2976472 - G 73 -6.9 -4.26188 | GGCAGAGAGCGAAAA GGCGC AGC ACGCC AGCAGCAATAACAGG AHA_2669 2979066 - 2976517 - | hypothetical protein TERM 3450 2979526 - 2979510 - R 100 -13.7 -5.27335 | opp_overlap 2979510 GCGCCCAAATAAAAA GGGGAGC CAG GCTCCCC TTTATCTCAATATGG TERM 3451 2979510 - 2979526 + r 100 -13.7 -4.07868 | opp_overlap 2979510 GCGCCCAAATAAAAA GGGGAGC CAG GCTCCCC TTTATCTCAATATGG AHA_2670 2981169 - 2979544 - | putative sulfatase TERM 3452 2979745 - 2979713 - G 74 -4.8 -4.56597 | gap 1 TTCTCTTTGGAAAAA CCGGGCGAC-ATCCA CACC TGCATGGGCACCCGG GTCTGATCATCCGGC TERM 3453 2980778 - 2980765 - G 72 -2.3 -4.72986 | overlap 2980767 2980770 TATCTTGACGAAAAA CAGCA GTAC CGCCG GCAGCACTCCGGCCA AHA_2671 2981550 - 2982329 + | hypothetical protein TERM 3454 2982386 - 2982330 - f 95 -14.4 -3.38786 | gap 1, opp_overlap 2982337, overlap 2982341 GATATCGAACAGTAA TCACGCAGCA-AGTCAGCCCGGCCGCC TCTG GGTCGCCGGGCTGACTATGCTCTGTGG GAATTGATGCAAGGC TERM 3455 2982337 - 2982379 + F 100 -20.7 -2.89921 | gap 1, opp_overlap 2982330 2982341 AACAGTAATCACGCA GCA-AGTCAGCCCGGCCGCC TCTG GGTCGCCGGGCTGACTATGC TCTGTGGGAATTGAT TERM 3456 2982374 - 2982341 - f 100 -18.1 -3.20435 | opp_overlap 2982337, overlap 2982330 GTAATCACGCAGCAA GTCAGCCCGGCCGCC TCTG GGTCGCCGGGCTGAC TATGCTCTGTGGGAA AHA_2672 2982415 - 2983629 + | major facilitator transporter TERM 3457 2983659 - 2983689 + F 100 -25.6 -3.87815 | opp_overlap 2983659 CGTCCGGATAGCAAA TGCCCCGGCAACCA AGT TGGTTGCCGGGGCA TTTCTGAAGATGGCG TERM 3458 2983689 - 2983659 - f 100 -25.6 -3.83026 | opp_overlap 2983659 CGTCCGGATAGCAAA TGCCCCGGCAACCA AGT TGGTTGCCGGGGCA TTTCTGAAGATGGCG AHA_2674 2983971 - 2984627 + | hypothetical protein TERM 3459 2984652 - 2984633 - f 76 -9.2 -3.93288 | opp_overlap 2984635, overlap 2984635 CCGCAGCTAATCAAA CACCCCGC TTCG GCGGGGTT TTTATTGGCACCTGT TERM 3460 2984650 - 2984635 - f 81 -11.8 -3.55604 | opp_overlap 2984635, overlap 2984633 GCAGCTAATCAAACA CCCCGC TTCG GCGGGG TTTTTATTGGCACCT TERM 3461 2984635 - 2984650 + F 100 -11.8 -5.06816 | opp_overlap 2984635 2984633 GCAGCTAATCAAACA CCCCGC TTCG GCGGGG TTTTTATTGGCACCT TERM 3462 2984738 - 2984703 - f 73 -10.4 -3.33762 | opp_overlap 2984704 2984709, overlap 2984704 AATCAAGGATATGAA GCGAAGTGGCCCTGAT CCAA ATCAGGGCCGTTTCGT TGTTGACCGGTTATG TERM 3463 2984737 - 2984704 - f 78 -13.9 -2.59534 | opp_overlap 2984704 2984709, overlap 2984703 ATCAAGGATATGAAG CGAAGTGGCCCTGAT CCAA ATCAGGGCCGTTTCG TTGTTGACCGGTTAT TERM 3464 2984704 - 2984737 + F 100 -18.3 -3.63837 | opp_overlap 2984704 2984703, overlap 2984709 ATCAAGGATATGAAG CGAAGTGGCCCTGAT CCAA ATCAGGGCCGTTTCG TTGTTGACCGGTTAT TERM 3465 2984709 - 2984732 + F 100 -13.2 -4.07618 | opp_overlap 2984704 2984703, overlap 2984704 GGATATGAAGCGAAG TGGCCCTGAT CCAA ATCAGGGCCG TTTCGTTGTTGACCG AHA_2675 2984791 - 2986944 + | hypothetical protein TERM 3466 2987286 - 2987261 - g 88 -16.9 -3.06831 | GGAAGGGCCAGCCAA GCAGGCCACCA AGAT TGGCGGCCTGC CCAAACCGGTGAAAT AHA_2676 2986965 - 2987309 + | dissimilatory sulfite reductase, gamma subunit TERM 3467 2987315 - 2987344 + T 100 -11.5 -5.55698 | gap 1, opp_overlap 2987315 ATGCATCTAAAAAAA TACCGCGC-CCATC CAA GATGCAGCGCGGTA TTTTTTTACCTTGTC TERM 3468 2987344 - 2987315 - T 100 -13.7 -5.47821 | gap 1, opp_overlap 2987315 ATGCATCTAAAAAAA TACCGCGCC-CATC CAA GATGCAGCGCGGTA TTTTTTTACCTTGTC AHA_2677 2988167 - 2987367 - | protein DedD folC 2989489 - 2988242 - | FolC bifunctional protein TERM 3469 2988855 - 2988825 - G 71 -6 -4.32034 | overlap 2988829 2988830 TCATCACCACGAAAA TCAATGCCGACCTG ACG CAGGCAGGCGCCGA GGCGGGCAGCCTCGC TERM 3470 2989473 - 2989453 - G 95 -10.4 -4.56978 | opp_overlap 2989453 GCTCCAAATAAGAAA GCCAGTCG ACCAG CGACCGGC TTTGGGATTGTTGCA accD 2990367 - 2989504 - | acetyl-CoA carboxylase, carboxyl transferase, beta subunit TERM 3471 2990506 - 2990494 - R 70 -3.3 -4.7497 | GCCAGTTACTAAAAA CTGGT CGT ACCCG GTGCCGAGTCCGGCA truA 2991296 - 2990487 - | tRNA pseudouridine synthase A TERM 3472 2991425 - 2991452 + r 77 -11.2 -3.56643 | opp_overlap 2991425 2991428, overlap 2991428 CACCGATGCCAAAAA CAAGGGGCAGCC CATC GGCTGCCCCTGC TTTCACCACTATGCG TERM 3473 2991451 - 2991425 - R 100 -14.5 -4.62783 | gap 1, opp_overlap 2991425 2991428, overlap 2991428 CACCGATGCCAAAAA CAAGGGGCAGCC CATC GGCTGCCCCT-G CTTTCACCACTATGC TERM 3474 2991449 - 2991428 - R 100 -17.3 -4.42748 | opp_overlap 2991425 2991428, overlap 2991425 CGATGCCAAAAACAA GGGGCAGCC CATC GGCTGCCCC TGCTTTCACCACTAT TERM 3475 2991428 - 2991449 + r 93 -17.3 -2.91322 | opp_overlap 2991428 2991425, overlap 2991425 CGATGCCAAAAACAA GGGGCAGCC CATC GGCTGCCCC TGCTTTCACCACTAT AHA_2681 2993674 - 2991476 - | motility protein FimV TERM 3476 2993618 - 2993589 - G 100 -6.4 -5.80364 | gap 2, opp_overlap 2993593 AGCTCAACAAAAAAA GGCTCCCGCGCCGA GTCT TCGGC-CTGG-GCC GTGCCCAGCAGACCC asd-2 2994966 - 2993950 - | aspartate-semialdehyde dehydrogenase TERM 3477 2995140 - 2995130 - R 74 -8.2 -4.03234 | overlap 2995131 TGGCTGGCAGACAAA CCCG AGC CGGG CCAGGGCTGCGCCGG AHA_2683 2996239 - 2995109 - | erythronate-4-phosphate dehydrogenase TERM 3478 2995277 - 2995257 - G 73 -8.9 -4.07687 | AGCCGGTTGCGAAAA CGGGCGTCA TCG CGACGCACG TCATAAATAAGGTGG TERM 3479 2995558 - 2995589 + g 72 -12.2 -3.29144 | opp_overlap 2995583, overlap 2995542 CCAGCCGCAGCGGCG CCTGGCTCTGCTGG CGCG CCAGCAAGGCCTGG TTGTCCCACACCTCG TERM 3480 2995787 - 2995757 - G 74 -9.5 -3.89346 | CTGGTAGTCGACAAA CTGCGCCGCCTCG TTGGC CTCGGCGGCGCGG GCACGGGGCGGATCG TERM 3481 2996825 - 2996849 + G 71 -13.5 -2.63089 | overlap 2996824 2996823 GACGCTGAGCCTGCC GGCGCTGCTGG CCC TCGGCGGCGCC CTGTTTGCCGTACTG AHA_2684 2996562 - 2997308 + | phosphatidylglycerophosphatase B TERM 3482 2997330 - 2997349 + T 100 -15 -5.06414 | opp_overlap 2997330 CACGACACAAAAAAA CGGGCACC CGCG GGTGCCCG TTTTTGTTCAAAGCC TERM 3483 2997349 - 2997330 - T 100 -15 -5.74122 | opp_overlap 2997330 CACGACACAAAAAAA CGGGCACC CGCG GGTGCCCG TTTTTGTTCAAAGCC AHA_2685 2998210 - 2997380 - | outer membrane lipoprotein AHA_2686 2998447 - 2998986 + | isochorismatase family protein TERM 3484 2999075 - 2999103 + F 91 -14.5 -3.06796 | overlap 2999079 GACCAGCGACTTCAT CCGACACGGCGCC AGT GGCGCCGTGTGGC TTGCCTGCACTGACC TERM 3485 2999079 - 2999099 + F 95 -18.3 -2.55015 | overlap 2999075 AGCGACTTCATCCGA CACGGCGCC AGT GGCGCCGTG TGGCTTGCCTGCACT TERM 3486 2999322 - 2999307 - f 73 -5.4 -4.60143 | ATACACCACATAAAA GGATTC ACAG GAACCC CCACATGGTCTGTAA TERM 3487 2999372 - 2999401 + F 71 -4.3 -4.65838 | TTTTGAGCCTTATCT CAGAATCAGAACG AGTG CTTTTTGACTCTG TTTTTCCCGTGTATA TERM 3488 2999487 - 2999474 - g 77 -2.3 -4.99861 | TATTAATGAGAAAAA CATCG TTAG CGTTG GCAATCTCGGCCCTG AHA_2687 2999464 - 3001338 + | serine proteinase TERM 3489 3001526 - 3001508 - g 70 -11.6 -3.19653 | overlap 3001499 GGACAACGGCAGCAA GCAGCGGG TCG CCCGCAGC GCAGACGGCAAGGCG AHA_2688 3001356 - 3001814 + | hypothetical protein TERM 3490 3001851 - 3001880 + F 76 -12.1 -3.14344 | gap 1, opp_overlap 3001845 GGCATATCAGCTGAT C-TTCGAGGGGGCC GCC GGCCCCCTCGCGCG TTGCTCGCAGCCATC TERM 3491 3001908 - 3001918 + F 74 -2.4 -5.0133 | ATCCTCATTGACCAT CAGG TCA CCCG TTTTTTCCGCACCTC TERM 3492 3003400 - 3003379 - g 72 -13.7 -2.70932 | gap 1 GCTGCTGCGCAACGA CGCC-GCGGC CCT GCCGCTGGCG GCAAGCAGCACCCTA AHA_2689 3001952 - 3004618 + | beta-glucosidase TERM 3493 3004661 - 3004623 - T 100 -21.7 -3.07344 | opp_overlap 3004632 TCACCCGCTAACAGA GGCAGGCACGGCCGGGC ACCCA GCCCGGCCTTGCCTGAC AGTTGCCCAGCAATG TERM 3494 3004632 - 3004652 + T 91 -15.4 -3.06831 | opp_overlap 3004623 AACAGAGGCAGGCAC GGCCGGGC ACCCA GCCCGGCC TTGCCTGACAGTTGC TERM 3495 3004685 - 3004709 + T 100 -18.6 -3.9461 | opp_overlap 3004678 3004675 AGCAATGACCCGACA CGGGACCGGC CTTGC GCCGGTCCCG TTGTTATTGGCGGGC AHA_2690 3006098 - 3004713 - | transcriptional regulator, AraC family protein TERM 3496 3005810 - 3005758 - GT 71 -8.2 -3.83026 | gap 1, opp_overlap 3005790 3005791 CGTGCTGACAGGAAA CTGCTCGTGATCCCCCGGCCCGCCA CTGA CGGCGGGCCTGCC-ACCCCGTGCAG CGGGCTGGCGCGACC TERM 3497 3005886 - 3005871 - GT 77 -8.2 -4.15453 | opp_overlap 3005874 TAACGGAGTGTAAAA GCACGC GCCA GCGCGC CATTTTAGGCACATC TERM 3498 3005964 - 3005947 - GT 100 -12.7 -4.7497 | opp_overlap 3005947 TTCAGCCATGAAAAA TGGCGCC CGTG GGCGCCA TTTTGGTGGGAGCTG TERM 3499 3005947 - 3005964 + gT 100 -12.7 -4.2558 | opp_overlap 3005947 TTCAGCCATGAAAAA TGGCGCC CGTG GGCGCCA TTTTGGTGGGAGCTG ppsA 3008367 - 3005995 - | phosphoenolpyruvate synthase TERM 3500 3006573 - 3006563 - GH 74 -6.8 -4.3129 | opp_overlap 3006563 3006562 GACGCACCACGAAAA CCGA TCA TCGG GTTCTCTTCGTGAGG TERM 3501 3008515 - 3008495 - H 81 -2.5 -5.42259 | TTATTGTCAAAAAAA TCCCCGA GCAAGAT TTGGGGA TGGCCGAATGACACA AHA_2692 3008682 - 3009494 + | hypothetical protein TERM 3502 3009544 - 3009569 + T 100 -19.1 -3.32963 | opp_overlap 3009544 AACGCCAATAAAAAA GCGCCGGATAC AGCC GTATCCGGCGC TTGTCGACTAGACCT TERM 3503 3009569 - 3009544 - T 100 -19.1 -5.4756 | opp_overlap 3009544 AACGCCAATAAAAAA GCGCCGGATAC AGCC GTATCCGGCGC TTGTCGACTAGACCT AHA_2693 3009871 - 3009584 - | hypothetical protein TERM 3504 3010113 - 3010097 - H 79 -2.9 -5.24531 | AGTCGCCATAAAAAA CAGAAAG CGA CTCACTG TAACGAAATAAATAC TERM 3505 3010303 - 3010251 - g 78 -6.4 -4.64676 | gap 2, overlap 3010252 3010253 3010267 3010268 GGATCTTCAACAAAA CGGCGAGGAGCTGAA-AC-GCGGTTT GAA AAACCGCCATATCCAGCTCATCGCAC TGGGCGGCGCCATCG TERM 3506 3010301 - 3010253 - g 71 -13.4 -2.62512 | gap 2, overlap 3010252 3010251 3010267 3010268 ATCTTCAACAAAACG GCGAGGAGCTGAA-AC-GCGGTTT GAA AAACCGCCATATCCAGCTCATCGC ACTGGGCGGCGCCAT TERM 3507 3010303 - 3010329 + G 74 -9.2 -3.89614 | overlap 3010305 ATCCAGCTCATCGCA CTGGGCGGCGCC ATC GGCACCGGCCTG TTTCTCGGCATTGCC AHA_2694 3010234 - 3011610 + | aromatic amino acid transport protein AroP TERM 3508 3011605 - 3011621 + T 73 -10.9 -3.4252 | opp_overlap 3011577 GTTGCGGCCAACCTG GGCTGAT GGC ATCAGCC TTATCGTCCCTCAAA TERM 3509 3011654 - 3011638 - T 100 -13.7 -4.07885 | opp_overlap 3011638 TATCGTCCCTCAAAA GCCGGTC ACT GACCGGC TTTTTTCGACCCGGA TERM 3510 3011638 - 3011654 + T 100 -13.7 -5.00616 | opp_overlap 3011638 TATCGTCCCTCAAAA GCCGGTC ACT GACCGGC TTTTTTCGACCCGGA TERM 3511 3011830 - 3011797 - T 100 -19.1 -4.59773 | gap 1, opp_overlap 3011803 TTGCACGTCTAAAAA CAACAAGCCCGAG-AC AGA GTGCTCGGGCTTGTTG CAGAAAGGCAGGTAG TERM 3512 3011803 - 3011824 + T 74 -10.9 -3.61398 | gap 1, opp_overlap 3011797 GTCTAAAAACAACAA GCCCGAGACA GAG TG-CTCGGGC TTGTTGCAGAAAGGC TERM 3513 3011868 - 3011851 - T 80 -5.5 -4.88067 | AGGCAGGTAGAAAAA TGCGGGA TTAT TCCAGCA GGAAGACGGCTTCCA AHA_2695 3012577 - 3011858 - | hypothetical protein TERM 3514 3012022 - 3012062 + g 74 -10.4 -3.68767 | opp_overlap 3012019, overlap 3012019 3012023 3012034 CGACGCTGTAAACCT TGCCGAGTTTCATGCCAA ACGCC TTGGCCAGAGACTCGGCC TTGGTTTTGGCATCT TERM 3515 3012023 - 3012061 + g 72 -13.9 -2.80537 | opp_overlap 3012019, overlap 3012022 3012019 3012034 GACGCTGTAAACCTT GCCGAGTTTCATGCCAA ACGCC TTGGCCAGAGACTCGGC CTTGGTTTTGGCATC TERM 3516 3012441 - 3012451 + g 72 -2.4 -4.72986 | TTCAGCGTCAGCATG TCGG GCT CCGC TTTTTGCTCGGCATA TERM 3517 3012594 - 3012570 - G 100 -8.6 -5.71712 | opp_overlap 3012570 3012569 3012572 CGCCACATAAAAAAA GACCTCAATC TATTG GAGTGAGGTC ATTATGCCCGTCGTC AHA_2696 3013176 - 3012619 - | hypothetical protein TERM 3518 3013255 - 3013229 - R 100 -12.2 -5.08824 | opp_overlap 3013230, overlap 3013231 CCCTCAGTCAAAAAA CAGGGGCCAGGT ATT ACCCGGCCCCCT TAGCTGGTTACGGAT TERM 3519 3013230 - 3013254 + r 72 -11.3 -3.13164 | opp_overlap 3013229 3013231 CCTCAGTCAAAAAAC AGGGGCCAGGT ATT ACCCGGCCCCC TTAGCTGGTTACGGA TERM 3520 3013253 - 3013231 - R 100 -17 -4.17608 | opp_overlap 3013230, overlap 3013229 CTCAGTCAAAAAACA GGGGCCAGGT ATT ACCCGGCCCC CTTAGCTGGTTACGG AHA_2697 3026045 - 3013263 - | structural toxin protein RtxA TERM 3521 3026164 - 3026189 + r 72 -11.9 -2.85574 | opp_overlap 3026138 3026169, overlap 3026169 TCATCTTTAGAATAA AAAAAGGGCCC TTAT GGGCCCTTTTG ATTTGATAACGTTCA TERM 3522 3026184 - 3026169 - R 100 -11.8 -5.88565 | opp_overlap 3026164 3026169, overlap 3026138 TTTAGAATAAAAAAA GGGCCC TTAT GGGCCC TTTTGATTTGATAAC TERM 3523 3026169 - 3026184 + r 100 -11.8 -4.58773 | opp_overlap 3026138 3026169, overlap 3026164 TTTAGAATAAAAAAA GGGCCC TTAT GGGCCC TTTTGATTTGATAAC AHA_2698 3028127 - 3026202 - | diguanylate cyclase/phosphodiesterase TERM 3524 3028979 - 3028949 - R 100 -21.2 -3.58726 | opp_overlap 3028949 GGCCGTCAGAGACAA GGGATGGCGGCAGC CCG GCTGCAGCCATCCC TTTCACTCGCATCAA TERM 3525 3028949 - 3028979 + r 100 -21.2 -3.65902 | opp_overlap 3028949 GGCCGTCAGAGACAA GGGATGGCGGCAGC CCG GCTGCAGCCATCCC TTTCACTCGCATCAA AHA_2699 3030340 - 3029012 - | agglutination protein AHA_2700 3031794 - 3030376 - | HlyD family secretion protein AHA_2701 3033931 - 3031787 - | toxin secretion ATP-binding protein TERM 3526 3032263 - 3032249 - G 78 -2.8 -5.09895 | overlap 3032251 3032252 CACCGAGCCAAAAAA CAGG GTCACGT CCTG CGGGACACAACCTAT TERM 3527 3033091 - 3033079 - G 93 -2.6 -5.63374 | TGAACAGGAAAAAAA CCGC GAACG GCAG GTCGATGAGGGTAGA AHA_2702 3035270 - 3034335 - | radical SAM protein TERM 3528 3034392 - 3034363 - G 81 -6.3 -4.81249 | gap 1, opp_overlap 3034383, overlap 3034364 CCGGAAAGCGAAAAA GGGCGCCCCAGCGC ATG ACCCTGGG-CGCCG GAGCGGGCCAGTTCA TERM 3529 3037061 - 3037047 - g 74 -12.8 -3.30159 | opp_overlap 3037051 CGAAGTGCTGGAGAA GGGCCG GGT CGGCCC GGGCGAGCTGTTCGT gltB 3035884 - 3040341 + | glutamate synthase subunit alpha gltD 3040354 - 3041769 + | glutamate synthase subunit beta TERM 3530 3041821 - 3041800 - T 100 -17.3 -3.66095 | opp_overlap 3041800 AAACTGCCATGCAAA CAGCCCCGC TCGT GCGGGGCTG TTTTTTTATATCGCT TERM 3531 3041800 - 3041821 + T 100 -17.3 -5.72616 | opp_overlap 3041800 AAACTGCCATGCAAA CAGCCCCGC TCGT GCGGGGCTG TTTTTTTATATCGCT AHA_2705 3042617 - 3041856 - | amino acid ABC transporter, ATP-binding protein AHA_2706 3043291 - 3042614 - | L-cystine ABC transporter, permease protein TERM 3532 3043253 - 3043234 - G 76 -7.1 -4.42748 | gap 1, overlap 3043231 3043235 GCACGGTAAAAATAA GCCCC-GC ACTGA GCAGGGGC CAAAAAGAGTCGATC AHA_2707 3044101 - 3043328 - | amino acid ABC transporter, periplasmic amino acid-binding protein TERM 3533 3044366 - 3044332 - R 81 -12.9 -3.14564 | gap 1, overlap 3044334 GGACTGGCCGAGGAA TAG-CCCCGCTGGCGG CGCT CCGCCAGCGGAAACCA TGTCAGGCGGGTTGC TERM 3534 3044363 - 3044334 - R 84 -13.5 -3.13522 | overlap 3044332 ACTGGCCGAGGAATA GCCCCGCTGGCGG CGCT CCGCCAGCGGAAA CCATGTCAGGCGGGT AHA_2708 3044779 - 3044369 - | hypothetical protein AHA_2709 3045367 - 3044789 - | O-methyltransferase soxR 3045903 - 3045436 - | redox-sensitive transcriptional activator SoxR AHA_2711 3045976 - 3046968 + | hypothetical protein AHA_2712 3047419 - 3046988 - | extracellular protease TERM 3535 3047475 - 3047460 - R 86 -11.8 -3.83568 | CGACATGGACAAGAA GGGGCC TTGC GGCCCC CGGTCGGCAAATCAG AHA_2713 3048527 - 3047487 - | extracellular protease TERM 3536 3048017 - 3047996 - G 70 -12.3 -3.17075 | gap 1 GGCCGCTGAAGCTAA CCG-AGGCGG TCA CCGCCTGCGG CTCGGCCAGGGGGGC TERM 3537 3048773 - 3048755 - R 100 -13.1 -5.24129 | CGCGCCTATAAAAAA CCCCGGC ACCGG GCCGGGG TATCAGACAGATGGA AHA_2714 3049438 - 3048800 - | hypothetical protein TERM 3538 3049514 - 3049486 - R 81 -13.1 -3.02947 | opp_overlap 3049486 3049493 3049493, overlap 3049493 CACCGATGACAGAGA TGGCAAAGGCGCC AGT GGCGCCTTTGCGG TTCAATAGAGCGGCC TERM 3539 3049486 - 3049514 + r 91 -15.3 -3.05384 | opp_overlap 3049486 3049493, overlap 3049493 3049493 CACCGATGACAGAGA TGGCAAAGGCGCC AGT GGCGCCTTTGCGG TTCAATAGAGCGGCC TERM 3540 3049507 - 3049493 - R 86 -12.8 -3.66139 | opp_overlap 3049493 3049486 3049493, overlap 3049486 GACAGAGATGGCAAA GGCGCC AGT GGCGCC TTTGCGGTTCAATAG TERM 3541 3049493 - 3049507 + r 86 -12.8 -3.6715 | opp_overlap 3049486 3049493, overlap 3049486 3049493 GACAGAGATGGCAAA GGCGCC AGT GGCGCC TTTGCGGTTCAATAG AHA_2715 3050764 - 3049538 - | putative ATP-dependent RNA helicase RhlE TERM 3542 3049636 - 3049679 + g 70 -11.6 -3.17212 | gap 1, overlap 3049639 CGGCGGCGTTGTCTT CCCGCTGCGGGCGC-TTGCCG AAG CGGCGACGCTCCTGCAGCTGC TTGATCAGCTCGTCG TERM 3543 3049639 - 3049676 + g 81 -16.3 -2.78547 | gap 1, overlap 3049636 CGGCGTTGTCTTCCC GCTGCGGGCGC-TTGCCG AAG CGGCGACGCTCCTGCAGC TGCTTGATCAGCTCG TERM 3544 3050913 - 3050895 - R 86 -10.3 -4.21194 | CGGCATGAGCGAAAA GTCGGTG CAGAC CACCGAC GGCTGTGCCTGACAT AHA_2716 3051618 - 3051085 - | spermidine N(1)-acetyltransferase AHA_2717 3052368 - 3051718 - | inner membrane protein YqjA TERM 3545 3052585 - 3052556 - R 100 -10.8 -5.52384 | overlap 3052557 3052558 GGGCCATCAAAAAAA TC-GGGCCCGCTCC GGCT GGAG-GGGCCCAGA CAGCAAAACGGCGTC TERM 3546 3052583 - 3052557 - R 86 -12.3 -3.90707 | gap 1, overlap 3052556 3052558 GGCCATCAAAAAAAT CGGGCCCGCTCC GGCT GGAG-GGGCCCA GACAGCAAAACGGCG TERM 3547 3052582 - 3052558 - R 81 -13.6 -2.93701 | gap 1, overlap 3052557 3052556 GCCATCAAAAAAATC GGGCCCGCTCC GGCT GGAG-GGGCCC AGACAGCAAAACGGC AHA_2718 3054182 - 3052599 - | CHASE4 domain-contain protein TERM 3548 3054275 - 3054260 - H 71 -4.6 -4.56597 | overlap 3054262 CTCTTGCGCGAAAAA GCTCGC CAGG GCGACC AACCTGCACTGCCAT AHA_2719 3054404 - 3055360 + | hypothetical protein AHA_2720 3055495 - 3056451 + | DNA-binding protein TERM 3549 3057174 - 3057199 + T 100 -19.1 -3.68222 | opp_overlap 3057174 3057178, overlap 3057178 GATATCTACATAAAA CAAAGGCGGCC CATT GGCCGCCTTTG TTATTGCAGTTACAG TERM 3550 3057199 - 3057174 - T 100 -19.1 -4.56358 | opp_overlap 3057174 3057178, overlap 3057178 GATATCTACATAAAA CAAAGGCGGCC CATT GGCCGCCTTTG TTATTGCAGTTACAG TERM 3551 3057178 - 3057195 + T 100 -14.1 -4.4634 | opp_overlap 3057174 3057178, overlap 3057174 TCTACATAAAACAAA GGCGGCC CATT GGCCGCC TTTGTTATTGCAGTT TERM 3552 3057195 - 3057178 - T 100 -14.1 -4.83243 | opp_overlap 3057178 3057174, overlap 3057174 TCTACATAAAACAAA GGCGGCC CATT GGCCGCC TTTGTTATTGCAGTT AHA_2721 3058462 - 3057209 - | hypothetical protein TERM 3553 3058215 - 3058231 + g 71 -11.5 -3.53012 | TGCATGCTGGCGGGC GCCCGGG GGA CCTGGGC TTTGGGCAGCGGGGC TERM 3554 3058530 - 3058504 - R 95 -15.1 -3.54297 | AGCCATCAATGACAA GGGCCCCCGCC TGCGT GACGAGGGCCC CCAAGGGTCGATACG leuA-2 3060213 - 3058555 - | 2-isopropylmalate synthase TERM 3555 3060310 - 3060339 + r 100 -14.9 -3.83205 | TAACGCTGGCCCTGG CCGGTCGTGCGGC GGTA GCCCCACGCCCGG TTTCCTGTGGCCCCT TERM 3556 3060634 - 3060653 + r 100 -15 -4.4009 | opp_overlap 3060634 TTTGCCAATAAAAAA CCCCGCCA TCGC TGGCGGGG TTTTATCGGGTCACG TERM 3557 3060653 - 3060634 - R 100 -15 -5.4505 | opp_overlap 3060634 TTTGCCAATAAAAAA CCCCGCCA TCGC TGGCGGGG TTTTATCGGGTCACG carB 3063935 - 3060699 - | carbamoyl phosphate synthase large subunit carA 3065088 - 3063952 - | carbamoyl-phosphate synthase, small subunit TERM 3558 3065344 - 3065329 - R 74 -2.5 -5.08255 | overlap 3065330 ACCCTGAAAAGAAAA GGCAA AAGTTG CTGCC AATCCAGACAAAGAG TERM 3559 3065471 - 3065503 + r 74 -2.9 -4.91573 | opp_overlap 3065481, overlap 3065481 GGAGGATGAGTGGCC TTTAAAAATGGAAAA CGT TTTTCTGTGTTTGAA TTTTTAGTCTGTTTT TERM 3560 3065712 - 3065683 - R 88 -13.7 -3.40323 | opp_overlap 3065690, overlap 3065690 ATACAAAATCACCAA TAAAAAACCCCGC ATGA GCGGGGTTTTTAA CAGACGAACGGGGCG TERM 3561 3065690 - 3065705 + r 100 -11.8 -4.56597 | opp_overlap 3065690 3065683 ATCACCAATAAAAAA CCCCGC ATGA GCGGGG TTTTTAACAGACGAA TERM 3562 3065705 - 3065690 - R 100 -11.8 -5.52023 | opp_overlap 3065690, overlap 3065683 ATCACCAATAAAAAA CCCCGC ATGA GCGGGG TTTTTAACAGACGAA dapB 3066670 - 3065777 - | dihydrodipicolinate reductase AHA_2726 3066900 - 3068234 + | Na+/H+ antiporter family protein TERM 3563 3068267 - 3068298 + F 79 -11.4 -3.66018 | overlap 3068233 3068273 TCCCGAGGATCCGGC GGCCGAGCCGCGCT GTTC AACCCGGCGCGGCC TTGTTAAGGTGATCG TERM 3564 3068273 - 3068297 + F 72 -12.1 -2.79289 | overlap 3068233 3068267 GGATCCGGCGGCCGA GCCGCGCTG TTCAACC CGGCGCGGC CTTGTTAAGGTGATC AHA_2727 3068367 - 3068966 + | 5,10-methenyltetrahydrofolate synthetase TERM 3565 3069108 - 3069131 + F 77 -3.8 -5.00884 | gap 1, overlap 3069094 GGTCGCTCTGGGGAG GCGGCTTGGAT ATA ATGCG-GCCGC TTTTTTCCAAAGGAT rpiA 3069152 - 3069805 + | ribose 5-phosphate isomerase A AHA_2729 3069808 - 3069927 + | ribose-5-phosphate isomerase A AHA_2730 3069896 - 3070048 + | ribose-5-phosphate isomerase A TERM 3566 3070085 - 3070068 - f 91 -14.1 -3.08679 | opp_overlap 3070068 CCTTCGGATGCAAGA CGGCGCC CCAT GGCGCCG TTTTTATTGGTTGCT TERM 3567 3070068 - 3070085 + F 100 -14.1 -5.20534 | opp_overlap 3070068 CCTTCGGATGCAAGA CGGCGCC CCAT GGCGCCG TTTTTATTGGTTGCT AHA_2731 3070152 - 3071489 + | D-3-phosphoglycerate dehydrogenase TERM 3568 3071517 - 3071535 + T 100 -12.4 -5.31275 | opp_overlap 3071517 GCCGTCCAGCAAAAA GCCCGTCG TGA TGACGGGC TTTTTTATGCTGCGA TERM 3569 3071535 - 3071517 - T 100 -11.7 -4.72272 | opp_overlap 3071517 GCCGTCCAGCAAAAA GCCCGTC GTGAT GACGGGC TTTTTTATGCTGCGA dgkA 3072076 - 3071696 - | diacylglycerol kinase TERM 3570 3072125 - 3072147 + H 100 -5.4 -5.48163 | CACATCCTATCAGAG CCCCTCGAGG TTT CCATCAGGGG TTTTTTGCTTTATTT AHA_2733 3072232 - 3073296 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3571 3073379 - 3073343 - g 87 -18.8 -2.78384 | gap 1 TGCCTCTCGACGAGA CGCTGCTGGCGCAGTGG GCAA CC-CTGCGCCAGCAGCT GTGGCCGCACCACGA AHA_2734 3073303 - 3073761 + | aminoglycoside 6'-N-acetyltransferase Iz TERM 3572 3073749 - 3073771 + T 77 -11.3 -3.52316 | gap 1, opp_overlap 3073749, overlap 3073745 CGTCTTCTTCAAAAA GGCCCTCGGC TGAC GCC-AGGGCC TTGCTTGTCTCTCAC TERM 3573 3073771 - 3073749 - T 95 -11.3 -4.56597 | gap 1, opp_overlap 3073745 3073749 CGTCTTCTTCAAAAA GGCCCTCGGC TGAC GCC-AGGGCC TTGCTTGTCTCTCAC AHA_2735 3074532 - 3073783 - | vitamin B12 import ATP-binding protein BtuD TERM 3574 3074340 - 3074287 - G 83 -15.1 -3.19026 | gap 1, overlap 3074289 TACCGGAATATGGAA CAGCTGGGGCTGGCGCTGGGGCAGCA TGG CGC-GCCGCTGCGCCAGCGCCGGCCA GCTCAAGTCCGCCAG TERM 3575 3074338 - 3074289 - G 91 -17.7 -3.15503 | gap 1, overlap 3074287 CCGGAATATGGAACA GCTGGGGCTGGCGCTGGGGCAGCA TGG CGC-GCCGCTGCGCCAGCGCCGGC CAGCTCAAGTCCGCC AHA_2736 3075562 - 3074555 - | vtamin B12-transporter permease TERM 3576 3075254 - 3075311 + g 82 -14.6 -3.30124 | CACCGCCATCGCCAC CATGGCGGCCAATCCCGCCCCGCTCG AGACGC CGAGCAGGCCGGGTTCGGCCACCGGG TTGTGCAGCATCACC AHA_2737 3076394 - 3075663 - | extracellular solute-binding protein, putative AHA_2738 3076508 - 3076864 + | transmembrane signal peptide protein TERM 3577 3077519 - 3077497 - g 91 -9 -4.56597 | overlap 3077500 CGCTGCCCTCAAAAA CACCCTGCGC CAG GCGCCGGACG TCATCCTCATCGGCG TERM 3578 3077755 - 3077736 - g 76 -9.2 -4.07687 | AGCGGCTGGTCAAAA CCAGCGAC GGTG GCCGCCGG GCGGCGGTGGAGATC AHA_2739 3076925 - 3078064 + | pilus retraction protein PilT TERM 3579 3078095 - 3078112 + F 85 -12.7 -3.53012 | opp_overlap 3078095 GACGGCACCTGCAAA CACCCGC TTCG GCGGGTG TTTGCACAAAAAACG TERM 3580 3078112 - 3078095 - f 85 -12.7 -3.57462 | opp_overlap 3078095 GACGGCACCTGCAAA CACCCGC TTCG GCGGGTG TTTGCACAAAAAACG TERM 3581 3078209 - 3078219 + F 70 -5.4 -4.46212 | opp_overlap 3078201, overlap 3078198 3078217 TGAACTATCGCGCCA TCTG CGA CAGA TTTTGTCATCACAAA TERM 3582 3079166 - 3079151 - g 70 -7.5 -4.07568 | opp_overlap 3079136 3079132, overlap 3079152 CTGCTGCCCGCAAAA GCGCC CCTACT GGCGC GATGTGGGCACGGTG glgC-2 3078348 - 3079619 + | glucose-1-phosphate adenylyltransferase TERM 3583 3079640 - 3079658 + F 95 -8.1 -4.83759 | opp_overlap 3079640 AACAGTCATAGCAGA GGGAGTC ATAGA GGCTCCC TTTTTACATTTGCTT TERM 3584 3079814 - 3079764 - g 87 -5.8 -5.21709 | overlap 3079766 TCGCATATGAAAAAA CTGGATGTTGCCCGCCTTGCCAGC CTC GCCGACGAGGCCGCCCACTCCCCG CGCCTGCGCATGAAC AHA_2741 3079686 - 3080234 + | hypothetical protein TERM 3585 3080300 - 3080282 - T 100 -16 -5.06816 | opp_overlap 3080282 ACGCGCCAATAAAAA GACCCGCC AGC GGCGGGTC TTTTTTATATCTGAA TERM 3586 3080282 - 3080300 + T 100 -16 -5.4251 | opp_overlap 3080282 ACGCGCCAATAAAAA GACCCGCC AGC GGCGGGTC TTTTTTATATCTGAA TERM 3587 3080361 - 3080335 - T 76 -13 -2.75992 | opp_overlap 3080341, overlap 3080332 3080340 GGGTATCGAACACGA GCAGATGAGCTG GTT CAGCCCTTCTGC ACCAGACCAATCTGG AHA_2742 3080591 - 3080349 - | LuxR family transcriptional regulator feoB 3082861 - 3080588 - | ferrous iron transport protein B TERM 3588 3082935 - 3082951 + r 76 -2.9 -5.08824 | overlap 3082937 TACCGGCTCGACCTC GATTTGC TGG GCAAGGC TTTTTTGCATGGAGA AHA_2744 3083144 - 3082917 - | hypothetical protein yciH 3083219 - 3083593 + | translation initation factor SUI1, putative AHA_2746 3083850 - 3084407 + | integral membrane protein TERM 3589 3084491 - 3084510 + G 100 -16.4 -4.67011 | opp_overlap 3084491 TGTCCTTGCAAGCAA GCCCCGCC CTTT GGCGGGGC TTTTTGCATCCGCTT TERM 3590 3084510 - 3084491 - g 88 -16.4 -3.33696 | opp_overlap 3084491 TGTCCTTGCAAGCAA GCCCCGCC CTTT GGCGGGGC TTTTTGCATCCGCTT AHA_2747 3084439 - 3085548 + | hypothetical protein TERM 3591 3086396 - 3086416 + G 74 -10.3 -3.6806 | GGCCTGATGACCCTG GCCGGCCTG CTG CTGGTCGGC TTTGGCTCCCTCTAT AHA_2748 3085541 - 3086548 + | hypothetical protein AHA_2749 3086545 - 3087042 + | hypothetical protein AHA_2750 3087116 - 3087862 + | hypothetical protein AHA_2751 3087964 - 3088710 + | hypothetical protein TERM 3592 3088716 - 3088755 + T 93 -17.2 -2.89564 | opp_overlap 3088727, overlap 3088721 3088727 CGCCCGCTGAGGGGC GGCATGAAAAAGGGGCCC GCCG GGGCCCCTTTTGCTTGTC TGTCTCGCCTGCGCA TERM 3593 3088721 - 3088750 + T 100 -16.5 -3.64466 | opp_overlap 3088727, overlap 3088716 3088727 GCTGAGGGGCGGCAT GAAAAAGGGGCCC GCCG GGGCCCCTTTTGC TTGTCTGTCTCGCCT TERM 3594 3088727 - 3088744 + T 100 -14.1 -4.5464 | opp_overlap 3088727, overlap 3088721 3088716 GGGCGGCATGAAAAA GGGGCCC GCCG GGGCCCC TTTTGCTTGTCTGTC TERM 3595 3088744 - 3088727 - T 100 -14.1 -4.72272 | opp_overlap 3088727 3088721 3088716 GGGCGGCATGAAAAA GGGGCCC GCCG GGGCCCC TTTTGCTTGTCTGTC AHA_2752 3089785 - 3088772 - | GGDEF domain-containing protein TERM 3596 3089379 - 3089390 + g 76 -7.2 -4.2558 | overlap 3089377 AGGTGATCCGAGCCC GCCG TCAG CGGC TTTTGCTCGGCACTG AHA_2753 3090780 - 3090472 - | hypothetical protein TERM 3597 3091315 - 3091338 + H 76 -10.2 -3.66356 | TCGGCTCACCCATTT GTCCAACGGC ACGC GCCGATGGGC TTTGACCTTCGCCAT TERM 3598 3091727 - 3091688 - H 75 -5.8 -4.64766 | gap 1, overlap 3091692 3091693 TGCATAGGTTAAAAA GTAACGTGTGAGCACAGCA GAA TGCTGCTCTCACATA-TAC CAAGGAAAAAATAGT TERM 3599 3092436 - 3092420 - H 91 -3.7 -5.50925 | AACTAATACAAAAAA TGAATCC CAT GGATTAA TGCCACTTCTCTTAA TERM 3600 3093217 - 3093207 - g 81 -2.6 -5.22289 | GAGCAAATATAAAAA TAAT AGA ATTA TAGTAAGTTTTGGTG AHA_2754 3092623 - 3094152 + | HD domain-containing protein TERM 3601 3094163 - 3094182 + T 100 -9.2 -5.07011 | opp_overlap 3094155 3094163 TATAACATATAAAAA CCGCAGCC CAAG GGATGCGG TTTTTAATTTCTATC TERM 3602 3094182 - 3094163 - T 100 -9.2 -5.12474 | opp_overlap 3094163, overlap 3094155 TATAACATATAAAAA CCGCAGCC CAAG GGATGCGG TTTTTAATTTCTATC TERM 3603 3094520 - 3094476 - T 100 -18.2 -4.39571 | gap 1, opp_overlap 3094488, overlap 3094488 GGCATAAAGGGAAAA GGC-ATAAAAAAACCGCAGCC CCAG GGCTGCGGTTTTTTTATTGGC TCAACCGGTTGGCAC TERM 3604 3094507 - 3094488 - T 100 -15 -5.68039 | opp_overlap 3094488, overlap 3094476 AAAGGCATAAAAAAA CCGCAGCC CCAG GGCTGCGG TTTTTTTATTGGCTC TERM 3605 3094488 - 3094507 + T 100 -15 -5.8187 | opp_overlap 3094476 3094488 AAAGGCATAAAAAAA CCGCAGCC CCAG GGCTGCGG TTTTTTTATTGGCTC AHA_2755 3094703 - 3094521 - | hypothetical protein TERM 3606 3094785 - 3094766 - R 100 -15 -4.12188 | opp_overlap 3094766 GCAGTATGCCGAAAA CCGCAGCC CTAA GGCTGCGG TTTTTTATTAGCTCA TERM 3607 3094766 - 3094785 + r 100 -15 -5.4833 | opp_overlap 3094766 GCAGTATGCCGAAAA CCGCAGCC CTAA GGCTGCGG TTTTTTATTAGCTCA cysS 3096206 - 3094830 - | cysteinyl-tRNA synthetase TERM 3608 3095945 - 3095988 + g 74 -11.9 -3.41051 | overlap 3095912 3095911 TCAGGCGCGCGGTCA GATCGTCACAG-GTGACGCCG GTTT CGGCGGCACGCT-TGATGATC TTGTCGTCCACGTCC TERM 3609 3096470 - 3096454 - g 91 -9.3 -4.62471 | CTGAACGCTGAAAAA GCCCCGG AAA CCGTGGC CAACTTCCTGCAATA ppiB 3096397 - 3096894 + | peptidyl-prolyl cis-trans isomerase B TERM 3610 3096921 - 3096938 + G 100 -12.7 -4.70659 | opp_overlap 3096917 3096921 TGCGAGATGAACTGA CTGCGGC CCCG GCCGCAG TTTTTCCATCTGCGA TERM 3611 3097510 - 3097526 + G 79 -10.8 -3.96188 | ACTGGCGTGGCAGCC GGGGGC GATGA GCCCCC TTTCTACCTCTACTT AHA_2758 3096884 - 3097579 + | HIT family protein, putative lpxH 3097576 - 3098301 + | UDP-2,3-diacylglucosamine hydrolase TERM 3612 3098323 - 3098349 + T 89 -13.8 -3.67588 | opp_overlap 3098328, overlap 3098328 CGGTTAGCAGCAATA AAAAAGGCGGGA AGA TCCCGCCTTTTG TTTGCCTGCGATTTG TERM 3613 3098344 - 3098328 - T 100 -13.7 -5.52023 | opp_overlap 3098323 3098328 AGCAGCAATAAAAAA GGCGGGA AGA TCCCGCC TTTTGTTTGCCTGCG TERM 3614 3098328 - 3098344 + T 100 -13.7 -4.90778 | opp_overlap 3098328, overlap 3098323 AGCAGCAATAAAAAA GGCGGGA AGA TCCCGCC TTTTGTTTGCCTGCG AHA_2760 3099341 - 3098388 - | protein NrfD TERM 3615 3098773 - 3098741 - G 77 -14.1 -3.34715 | overlap 3098739 CATCCTCCCGAAACA GGGTGACCGCCAGCA AGA TGGTGGAGGCCACCC CCGAGCTGATGCCGG TERM 3616 3098877 - 3098859 - G 75 -3.7 -4.8048 | GGCGGAGAGCAAAAA GCCGGTG TAGGC CCCCAGC AGCACGGCCAGCAGC AHA_2761 3100058 - 3099390 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein AHA_2762 3100684 - 3100055 - | formate-dependent nitrite reductase TERM 3617 3100451 - 3100489 + g 83 -5.1 -5.00616 | overlap 3100482 CATCCCCTCCTCCCC GTCGTGGCACTTCTCGC ACTTG GCGAAACGGGCTGCGGC TTTTTTGGCGGCGGC TERM 3618 3100482 - 3100504 + g 86 -4.7 -5.20328 | overlap 3100451 CACTTGGCGAAACGG GCTGCGGCT TTTTT GGCGGCGGC TTTCTTTTTTTCCGC TERM 3619 3100760 - 3100743 - R 100 -11.3 -5.06414 | opp_overlap 3100743 GCCTGGCAACAAAAA GGAGCTG GTGA CAGCTCC TTTGACGGTCATGAA TERM 3620 3100743 - 3100760 + r 77 -11.3 -3.58343 | opp_overlap 3100743 GCCTGGCAACAAAAA GGAGCTG GTGA CAGCTCC TTTGACGGTCATGAA TERM 3621 3100806 - 3100786 - R 83 -14.7 -2.705 | opp_overlap 3100792, overlap 3100783 3100778 3100788 ATGAACACGAGACCA CACCCCGCC AGA AGCGGGGTG GCTGCGTCAACGGGA TERM 3622 3100804 - 3100788 - R 71 -11.5 -2.89154 | opp_overlap 3100792, overlap 3100786 3100783 3100778 GAACACGAGACCACA CCCCGCC AGA AGCGGGG TGGCTGCGTCAACGG AHA_2763 3101445 - 3100834 - | cytochrome c553 TERM 3623 3100872 - 3100900 + g 74 -9.5 -3.84271 | CGGCCAGCGCCTTGA GGTCGGCATCGCT CAT GGCGATGATGGCC TTGTTCATCTTCTCG TERM 3624 3102050 - 3102019 - g 70 -7.8 -4.00445 | CAGCACCAAGAACAA CCGGCCCACCGGCG AGAA CGGCGGCAAGCTGG AAGCGCTTGGCAATG AHA_2764 3101576 - 3103807 + | deCa-heme c-type cytochrome TERM 3625 3103844 - 3103813 - f 78 -13.6 -2.62184 | opp_overlap 3103815 3103816 CTTCCGTTGAGACCA CCAGGCCGGGGGGA TGCC TCCCCCCGGCCCTT TGCCGTTGAAGGACA TERM 3626 3103815 - 3103842 + F 100 -18.4 -3.66178 | opp_overlap 3103813, overlap 3103816 TCCGTTGAGACCACC AGGCCGGGGGGA TGCC TCCCCCCGGCCC TTTGCCGTTGAAGGA TERM 3627 3103816 - 3103841 + F 100 -21.9 -2.79492 | opp_overlap 3103813, overlap 3103815 CCGTTGAGACCACCA GGCCGGGGGGA TGCC TCCCCCCGGCC CTTTGCCGTTGAAGG AHA_2765 3103864 - 3104835 + | nitrate/TMAO reductase TERM 3628 3105437 - 3105426 - g 91 -5.8 -5.31275 | overlap 3105428 TCTCATGAGAAAAAA GAGG CCAC CCTC GCCTACTACCAGTCG TERM 3629 3105461 - 3105428 - g 76 -7.3 -4.29153 | opp_overlap 3105457 3105458, overlap 3105426 TCATGAGAAAAAAGA GGCCACCCTCGCCTA CTAC CAGTCGAGCGTGCCC GGCATCGGTAGCGGG AHA_2766 3104847 - 3106838 + | outer membrane protein TERM 3630 3106896 - 3106917 + T 100 -15.9 -3.82665 | opp_overlap 3106896 CAGCCCAACAATAAA GAGGGGAGC CCAG GCTCCCCTC TTTCATCATCTCGTC TERM 3631 3106917 - 3106896 - T 100 -15.9 -4.45738 | opp_overlap 3106896 CAGCCCAACAATAAA GAGGGGAGC CCAG GCTCCCCTC TTTCATCATCTCGTC AHA_2767 3109075 - 3106994 - | chemotaxis transducer, putative TERM 3632 3108998 - 3109029 + g 81 -16.6 -2.78384 | GACCGAATGCCTTCC TCGGGGCGCATGCG ACAC CGCATGTGCCTCGG TATGGTCGAAGGCGG AHA_2768 3109630 - 3110919 + | methyl-accepting chemotaxis protein TERM 3633 3111128 - 3111109 - T 100 -13.6 -5.65496 | opp_overlap 3111096 3111109 GACCAAAAACAAAAA GGCCGCTA TTGC TAGCGGCC TTTGTAAGTCTTTGA TERM 3634 3111109 - 3111128 + T 100 -13.6 -3.99957 | opp_overlap 3111109, overlap 3111096 GACCAAAAACAAAAA GGCCGCTA TTGC TAGCGGCC TTTGTAAGTCTTTGA TERM 3635 3111372 - 3111360 - T 74 -7.7 -4.18197 | opp_overlap 3111358 3111360 ACGCGCCATGCAAAA GAGAG AAA CTCTC TATTGTCTGAATTTG TERM 3636 3111593 - 3111623 + T 72 -11.8 -2.77899 | overlap 3111591 TTTCAACGTTCACGA CCGTTTCCCTGCCC CAA GTGCGGGGAAACGA TGCTTAGTACAAACG pgsA 3112197 - 3111643 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase uvrC 3114351 - 3112501 - | excinuclease ABC, C subunit TERM 3637 3114502 - 3114517 + r 83 -11.8 -3.76224 | opp_overlap 3114502 GGCAAAAAGCAAAAA GGCGGC ACAG GCCGCC TTTGATGGCTACACG TERM 3638 3114517 - 3114502 - R 100 -11.8 -5.18355 | opp_overlap 3114502 GGCAAAAAGCAAAAA GGCGGC ACAG GCCGCC TTTGATGGCTACACG uvrY 3115184 - 3114540 - | response regulator TERM 3639 3115368 - 3115351 - R 100 -10.5 -5.5762 | ATTAAACACAAAAAA CGGCGCC CGCA GGCACCG TTCAGAGTCATTTTT kdsB 3116158 - 3115397 - | 3-deoxy-D-manno-octulosonate cytidylyltransferase TERM 3640 3115987 - 3115962 - G 73 -11.1 -3.5944 | gap 1 ATGCACACCTCGAAA CCGGCCTGCCCG GCG CAGGC-GGCCAG CGCCTGCTGCACCCG AHA_2776 3116343 - 3116155 - | hypothetical protein lpxK 3117466 - 3116465 - | tetraacyldisaccharide 4'-kinase msbA 3119235 - 3117466 - | lipid A export permease/ATP-binding protein MsbA AHA_2779 3121753 - 3119468 - | DNA internalization-related competence protein ComEC/Rec2 TERM 3641 3121550 - 3121532 - GH 72 -2.2 -4.8048 | overlap 3121534 3121537 GCCGCACAGCAAAAA CAGCAGCC GCC AGCAGCGG TAACCGGCCAGGGGG AHA_2780 3121697 - 3122215 + | flagellar biosynthesis protein FlhF AHA_2781 3122209 - 3122703 + | hypothetical protein AHA_2782 3122826 - 3124334 + | hypothetical protein TERM 3642 3124381 - 3124358 - T 100 -21 -5.1417 | opp_overlap 3124358 TCAGAAAATGAAAAA GCCCGCCGGG TCTC CCCGGCGGGC TTTTTACTGAACGGA TERM 3643 3124358 - 3124381 + T 100 -21 -4.72272 | opp_overlap 3124358 TCAGAAAATGAAAAA GCCCGCCGGG TCTC CCCGGCGGGC TTTTTACTGAACGGA aspC 3125602 - 3124412 - | aromatic amino acid aminotransferase TERM 3644 3125708 - 3125690 - R 83 -5.9 -4.87133 | opp_overlap 3125690, overlap 3125691 ACGTGGCAAACAAAA GCGCCCA TCTGG CGAGCGC TTCGTCAACTCTTTA AHA_2784 3126653 - 3125778 - | hypothetical protein TERM 3645 3126435 - 3126402 - G 93 -14.6 -4.07568 | overlap 3126425 CTCGTTGGGGGAAAA GCTCACCTCGCTCT TGCGAT AGAGCGCGGCGAGC ACCCGTTCGTTGACC TERM 3646 3126919 - 3126900 - R 100 -13.6 -5.23292 | opp_overlap 3126900 GCAGATAAAACAAAA CGGCCAAG CAAG CTTGGCCG TTTATCAACTAAATC TERM 3647 3126900 - 3126919 + r 93 -13.6 -3.89822 | opp_overlap 3126900 GCAGATAAAACAAAA CGGCCAAG CAAG CTTGGCCG TTTATCAACTAAATC AHA_2785 3128017 - 3126950 - | outer membrane protein TERM 3648 3127284 - 3127306 + g 71 -6.2 -4.30987 | overlap 3127286 AAACCGTTGATGGCG TAGTGTGCAC CCA GTGCCCACTC TTTCTTGTCACCAGT dinG 3128351 - 3130471 + | ATP-dependent DNA helicase DinG AHA_2787 3130645 - 3131304 + | hypothetical protein TERM 3649 3131351 - 3131335 - g 77 -13.7 -3.28712 | opp_overlap 3131335 CGTTTCGTGCGACAA GGGGAGC CTG GCTCCCC TTTTTCATATCTGCC TERM 3650 3131335 - 3131351 + G 100 -13.7 -4.84527 | opp_overlap 3131335 CGTTTCGTGCGACAA GGGGAGC CTG GCTCCCC TTTTTCATATCTGCC AHA_2788 3131326 - 3132285 + | histone deacetylase/AcuC/AphA family protein TERM 3651 3132372 - 3132349 - T 93 -13.8 -3.91488 | opp_overlap 3132350, overlap 3132350 3132352 AACCGTTGCAAACAA CGAGGCGGCC CTGG GGCCGCCTCT TCTTTATACCGGGTA TERM 3652 3132350 - 3132371 + T 100 -17.3 -4.06687 | opp_overlap 3132349 3132350 3132352 ACCGTTGCAAACAAC GAGGCGGCC CTGG GGCCGCCTC TTCTTTATACCGGGT TERM 3653 3132371 - 3132350 - T 93 -17.3 -2.94411 | opp_overlap 3132350, overlap 3132349 3132352 ACCGTTGCAAACAAC GAGGCGGCC CTGG GGCCGCCTC TTCTTTATACCGGGT TERM 3654 3132369 - 3132352 - T 91 -14.1 -3.02371 | opp_overlap 3132350, overlap 3132350 3132349 CGTTGCAAACAACGA GGCGGCC CTGG GGCCGCC TCTTCTTTATACCGG AHA_2789 3133612 - 3132464 - | MFS family transporter TERM 3655 3133937 - 3133958 + r 100 -17.3 -3.18264 | opp_overlap 3133937 CTGCCCAACAACAAA GAGGCGGCC CAGG GGCCGCCTC TTCATGAGTACCAGA TERM 3656 3133958 - 3133937 - R 100 -17.3 -4.44667 | opp_overlap 3133937 CTGCCCAACAACAAA GAGGCGGCC CAGG GGCCGCCTC TTCATGAGTACCAGA rbgA 3134935 - 3133985 - | ribosomal biogenesis GTPase AHA_2791 3135268 - 3136659 + | alkaline phosphatase, placental type TERM 3657 3137382 - 3137336 - g 71 -9.4 -3.75738 | gap 3 CAGCACCAGCAACAA GGGCGGCC-GCGCCGACGG-GCG GGAT CTCACCGCCGA-GCTGACCGCCC AGGGCTATCGCTACG AHA_2792 3136671 - 3138077 + | alkaline phosphatase, tissue-nonspecific isozyme TERM 3658 3138112 - 3138079 - f 100 -21.1 -3.53012 | gap 1, opp_overlap 3138081, overlap 3138080 CGCTCGGCCTGTAAA CG-GCAGGGCCCGGCA GGG TGCCGGGCCCTGCTCA TTCGAGCGATCCCCT TERM 3659 3138110 - 3138080 - f 100 -22.6 -2.71712 | opp_overlap 3138081, overlap 3138079 GCTCGGCCTGTAAAC GGCAGGGCCCGGCA GGG TGCCGGGCCCTGCT CATTCGAGCGATCCC TERM 3660 3138081 - 3138109 + F 100 -26.1 -2.71364 | opp_overlap 3138080 3138079 CTCGGCCTGTAAACG GCAGGGCCCGGCA GGG TGCCGGGCCCTGC TCATTCGAGCGATCC TERM 3661 3138644 - 3138620 - g 73 -3.4 -4.72272 | opp_overlap 3138630, overlap 3138621 CGCTGGTATGAAAAA CGCGAGGGCA GGCAG CGCACCCGCA TCCTCTGGTCCAACC AHA_2793 3138128 - 3138811 + | hypothetical protein TERM 3662 3139456 - 3139431 - g 91 -16.9 -3.28924 | opp_overlap 3139427 CAGCGCCCGCTACAA CCAGCAGCAGG CCGG CCTGCCGCTGG CGGATCTGGTGCGTG AHA_2794 3138865 - 3139623 + | hypothetical protein rnk 3139856 - 3140251 + | regulator of nucleoside diphosphate kinase AHA_2796 3140441 - 3141031 + | DNA-binding transcriptional activator UhpA uhpB 3141028 - 3142548 + | sensory histidine kinase UhpB TERM 3663 3142931 - 3142962 + G 77 -13 -3.62046 | gap 1 TCTCGTCGTCGCTGT GGCTGTTCGCCGCCC TCT GGGTGGCCAAC-GCC TTCTTCCAGGGCTGG AHA_2798 3142576 - 3143904 + | regulatory protein UhpC TERM 3664 3143897 - 3143936 + T 78 -7.1 -4.62069 | overlap 3143897 CGCGCCCCCGCGACG CCGG-TTGACCGGCTAGGC TTGC GCC-AGCCGGCAGACCCGG TTTTTGCCCTCCCGC AHA_2799 3145048 - 3143909 - | diguanylate cyclase/phosphodiesterase TERM 3665 3144016 - 3144000 - G 75 -12.3 -3.54307 | AACAGGGTGTCGAAA TGCCAGC TGT GCTGGCA GCGCACCAGCCCCAT AHA_2800 3145487 - 3146338 + | amino acid ABC transporter, periplasmic amino acid-binding protein TERM 3666 3146373 - 3146339 - f 73 -10.7 -3.36557 | gap 1 AACCAGCTCAAGTAA CCTCGC-AAGGGGCGG CCCG CCGCCCCTTCACGCAG ACCCCCACACAATAA AHA_2801 3146408 - 3147388 + | amino acid ABC transporter, permease protein AHA_2802 3147372 - 3148115 + | glutamate transport ATP-binding protein GluA TERM 3667 3148164 - 3148134 - T 100 -24.2 -3.95073 | opp_overlap 3148134 CGCCAGAGGTATAAA CAGAAGAGGGAGCC CAT GGCTCCCTCTTCTG TTTATACCTCTGGCG TERM 3668 3148134 - 3148164 + T 100 -24.2 -3.95073 | opp_overlap 3148134 CGCCAGAGGTATAAA CAGAAGAGGGAGCC CAT GGCTCCCTCTTCTG TTTATACCTCTGGCG AHA_2803 3148636 - 3148187 - | hypothetical protein TERM 3669 3148834 - 3148806 - R 100 -18.3 -4.7497 | opp_overlap 3148808, overlap 3148808 GTGACCCACCAAAAA CAGCAGAGGGACT CTC AGTCCCTCTGCTA TTGGCCGAAACCCTG TERM 3670 3148808 - 3148832 + r 100 -18.7 -3.01712 | opp_overlap 3148808 3148806 GACCCACCAAAAACA GCAGAGGGACT CTC AGTCCCTCTGC TATTGGCCGAAACCC TERM 3671 3148832 - 3148808 - R 100 -18.7 -3.99327 | opp_overlap 3148808, overlap 3148806 GACCCACCAAAAACA GCAGAGGGACT CTC AGTCCCTCTGC TATTGGCCGAAACCC AHA_2804 3149654 - 3148887 - | amino acid ABC transporter periplasmic protein AHA_2805 3149812 - 3150723 + | C-5 sterol desaturase TERM 3672 3150720 - 3150700 - T 74 -10.3 -3.53012 | opp_overlap 3150696, overlap 3150678 3150701 GTGCTGTTTGGCAAA CCGGCCGGC CCC GCCAGCCGC TAAGTCCTTGCCGCC TERM 3673 3150719 - 3150701 - T 79 -13.8 -2.71712 | opp_overlap 3150696, overlap 3150678 3150700 TGCTGTTTGGCAAAC CGGCCGGC CCC GCCAGCCG CTAAGTCCTTGCCGC TERM 3674 3150788 - 3150763 - T 100 -14.7 -4.52857 | opp_overlap 3150764, overlap 3150764 ACGTCGCAGACAAAA TGAGAGCGCCC CCTT GGGCGCTCTCT TGCATTGGATCACCA TERM 3675 3150764 - 3150787 + T 100 -18.2 -3.19192 | opp_overlap 3150764 3150763 CGTCGCAGACAAAAT GAGAGCGCCC CCTT GGGCGCTCTC TTGCATTGGATCACC TERM 3676 3150787 - 3150764 - T 100 -18.2 -3.31232 | opp_overlap 3150764, overlap 3150763 CGTCGCAGACAAAAT GAGAGCGCCC CCTT GGGCGCTCTC TTGCATTGGATCACC AHA_2806 3152210 - 3150810 - | arginine/ornithine antiporter AHA_2807 3153122 - 3152220 - | homocysteine S-methyltransferase TERM 3677 3153140 - 3153157 + r 70 -5.5 -4.46675 | overlap 3153142 CTGTCTCTCTGCGTG TCCCCGT CGTG ACGGGTA TTTATTGTGTTGAGT TERM 3678 3153142 - 3153155 + r 71 -8.1 -3.83144 | overlap 3153140 GTCTCTCTGCGTGTC CCCGT CGTG ACGGG TATTTATTGTGTTGA TERM 3679 3153372 - 3153339 - R 100 -19.7 -4.00038 | opp_overlap 3153345, overlap 3153342 CACCAGGATGAGAAA CGACAAGAGGCCACC CGAA GGTGGCCTCTTGTGG CGACAAGTGCACTGG TERM 3680 3153369 - 3153342 - R 100 -20 -3.04836 | opp_overlap 3153345, overlap 3153339 CAGGATGAGAAACGA CAAGAGGCCACC CGAA GGTGGCCTCTTG TGGCGACAAGTGCAC TERM 3681 3153345 - 3153366 + r 100 -15.9 -3.28924 | opp_overlap 3153342 3153339 GATGAGAAACGACAA GAGGCCACC CGAA GGTGGCCTC TTGTGGCGACAAGTG AHA_2808 3153928 - 3153392 - | hypothetical protein AHA_2809 3155273 - 3153954 - | putative transporter TERM 3682 3155244 - 3155220 - G 71 -8.5 -3.95183 | overlap 3155222 3155223 GGAGAGAGAGAAGAA CACGCTGCCGG CGA CCAGCAGCATC AGGAAAAATAAACTA TERM 3683 3155242 - 3155222 - G 73 -11.1 -3.55664 | overlap 3155220 3155223 AGAGAGAGAAGAACA CGCTGCCGG CGA CCAGCAGCA TCAGGAAAAATAAAC TERM 3684 3155427 - 3155453 + r 81 -12.4 -3.52204 | opp_overlap 3155433, overlap 3155433 GACTGAAAAGGCAAC AAAAAAGGCGCT CAA AGCGCCTTTTTA TTCATTTCAGACTCA TERM 3685 3155433 - 3155447 + r 100 -11.4 -5.24551 | opp_overlap 3155433, overlap 3155427 AAAGGCAACAAAAAA GGCGCT CAA AGCGCC TTTTTATTCATTTCA TERM 3686 3155447 - 3155433 - R 100 -11.4 -5.52096 | opp_overlap 3155433 3155427 AAAGGCAACAAAAAA GGCGCT CAA AGCGCC TTTTTATTCATTTCA phoU 3156176 - 3155466 - | transcriptional regulator PhoU pstB 3157105 - 3156287 - | phosphate ABC transporter, ATP-binding protein PstB TERM 3687 3156670 - 3156698 + g 70 -12.3 -3.16564 | overlap 3156694 3156695 CGCGCAGTGAGCGCT CGGCCGCCTCGTC CAG GGTGCGGCGGTCG TTGATGCCCTGCAGG TERM 3688 3157167 - 3157197 + r 75 -11.8 -2.96692 | overlap 3157169 3157174 ACGGCCGGAACGCTT GGCTAGCAGGGAAC CCC GTTCCCTGCCCGTC TCTGTGGTGCTGGTC TERM 3689 3157221 - 3157235 + r 71 -4.2 -4.57073 | GCTGGTCTATCAATG TTCCAG CGA CCGGAA TTTTTCACGCAAGTG AHA_2812 3158864 - 3157215 - | transmembrane component of the phosphate specific transport complex TERM 3690 3158898 - 3158911 + r 73 -5.3 -4.56597 | TTCAGAGCAGCCCAT TACAG AGAG CTGTA TTTTTCACGCAACCG pstC 3161134 - 3158897 - | phosphate ABC transporter, permease protein PstC TERM 3691 3161207 - 3161220 + r 70 -6.7 -4.17048 | TTGTTACATCAAGGC CCTCT GTGA AGAGG TTATTTTGAAGGGGC TERM 3692 3161342 - 3161302 - R 80 -9.8 -3.93985 | gap 2, opp_overlap 3161308 3161314 3161315, overlap 3161308 AGAAGATATAGGAAA GTATAACGCGCGAAGGCGGC CTC GCCGACTTCGC-CGTTCT-C AGTCAGTGGGGCCGC TERM 3693 3161308 - 3161337 + r 95 -14.3 -3.36878 | gap 1, opp_overlap 3161308 3161302, overlap 3161314 3161315 TATAGGAAAGTATAA CGCGCGAAGGCGGC CTC GCCGACTTCGC-CG TTCTCAGTCAGTGGG TERM 3694 3161337 - 3161308 - R 95 -14.3 -3.6392 | gap 1, opp_overlap 3161308 3161314 3161315, overlap 3161302 TATAGGAAAGTATAA CGCGCGAAGGCGGC CTC GCCGACTTCGC-CG TTCTCAGTCAGTGGG TERM 3695 3161352 - 3161386 + r 74 -4.9 -4.82901 | overlap 3161315 3161314 GTTCTCAGTCAGTGG GGCCGCCGCTTTG TTGCAGTGC CAATCTGGCGGCC TTTTTCTCGGCGCGC AHA_2814 3161880 - 3161341 - | tRNA-specific adenosine deaminase TERM 3696 3162103 - 3162093 - H 78 -2.4 -5.24129 | overlap 3162094 CTCTCTGATAAAAAA GGAG TTG CACC CATTTGCTCAGATCA TERM 3697 3162267 - 3162244 - H 100 -15.4 -4.08692 | opp_overlap 3162244 CAATTTCCCCGAAAA TAGCCCAGTC TCGC GACTGGGCTA TTTTTTTGCCTGCTT TERM 3698 3162244 - 3162267 + H 100 -15.4 -5.49729 | opp_overlap 3162244 CAATTTCCCCGAAAA TAGCCCAGTC TCGC GACTGGGCTA TTTTTTTGCCTGCTT TERM 3699 3164509 - 3164463 - g 74 -10.6 -3.73068 | opp_overlap 3164507 GCGTGAAGCCAACAA CGGCCACGACGGTACCTGGGTG GCC CACCCCGGTCTCGCCGATACCG CCATGGCGGTGTTCA aceB 3163381 - 3164988 + | malate synthase TERM 3700 3166074 - 3166050 - g 82 -2.8 -5.10208 | gap 1, overlap 3166051 3166052 CAACTGGAAGAAAAA CCTGGACGATG CCAC CATCGCCC-GC TTCCAGCAGGAGCTG aceA 3165064 - 3166377 + | isocitrate lyase TERM 3701 3166417 - 3166435 + T 100 -17.4 -5.04249 | opp_overlap 3166417 CTTGAGATAGCAAAA CCCCGGCC ACT GGCCGGGG TTTCTTTTTTGAAAG TERM 3702 3166435 - 3166417 - T 100 -17.4 -4.39166 | opp_overlap 3166417 CTTGAGATAGCAAAA CCCCGGCC ACT GGCCGGGG TTTCTTTTTTGAAAG TERM 3703 3166476 - 3166450 - T 85 -13 -3.53012 | GTTTCTTTTTTGAAA GGCCCTTCTCCC GAA GGGAGAAGGAAC AAAGCGATAGAACCT dnaA-2 3167424 - 3166627 - | chromosomal replication initiator protein DnaA TERM 3704 3167285 - 3167267 - G 74 -2.4 -4.82901 | overlap 3167268 TTGCCGGGATAAAAA CTGACGAA GGT TTCATCAT CCGGTAGTTGTACGG TERM 3705 3167411 - 3167390 - G 85 -14.4 -3.5947 | AAGGCGGATAGAGAA CCGCCCGG ACGATG CCGGGCGG TGTGGATCCTCATAA AHA_2819 3168572 - 3167544 - | hypothetical protein TERM 3706 3168680 - 3168650 - R 90 -12.5 -3.85698 | opp_overlap 3168653, overlap 3168652 3168653 CCGGGGCGGGAGAAA CAGCGGAGCCGGC GGGAT GCCGGCTCCGTTT GCGCGCCTGCTGGCA TERM 3707 3168678 - 3168652 - R 95 -15.1 -3.51934 | opp_overlap 3168653, overlap 3168650 3168653 GGGGCGGGAGAAACA GCGGAGCCGGC GGGAT GCCGGCTCCGT TTGCGCGCCTGCTGG TERM 3708 3168677 - 3168653 - R 100 -18.6 -2.70946 | opp_overlap 3168653, overlap 3168652 3168650 GGGCGGGAGAAACAG CGGAGCCGGC GGGAT GCCGGCTCCG TTTGCGCGCCTGCTG TERM 3709 3168653 - 3168677 + r 100 -19.3 -3.54741 | opp_overlap 3168653 3168652 3168650 GGGCGGGAGAAACAG CGGAGCCGGCG GGA TGCCGGCTCCG TTTGCGCGCCTGCTG upp 3169342 - 3168716 - | uracil phosphoribosyltransferase TERM 3710 3169712 - 3169688 - g 72 -13.5 -2.82623 | overlap 3169685 TGCGGGCTACAAGGA GCCGGTGCTGG TCT CCGGCACCGAC GGGGTGGGCACCAAG purM 3169518 - 3170555 + | phosphoribosylformylglycinamidine cyclo-ligase TERM 3711 3170761 - 3170734 - g 74 -12.6 -3.34398 | opp_overlap 3170725 3170717, overlap 3170732 GGTGCGTGCCAAAGA GGCGGGGGTGGC CACC GCCATCCTCGCC CAGCAGCAGTTTGCC purN 3170576 - 3171226 + | phosphoribosylglycinamide formyltransferase TERM 3712 3171282 - 3171249 - T 90 -10.3 -4.23723 | opp_overlap 3171251 3171254 3171257, overlap 3171254 3171257 CAACAGCATGCAAAA TAGAACAAGGGAGGC CCAG GCCTCCCTTGTCATT TCTATCTACCAGCGC TERM 3713 3171251 - 3171280 + T 86 -10.7 -4.12532 | opp_overlap 3171249 3171254 3171257, overlap 3171254 3171257 ACAGCATGCAAAATA GAACAAGGGAGGC CCAG GCCTCCCTTGTCA TTTCTATCTACCAGC TERM 3714 3171254 - 3171277 + T 100 -16.8 -3.09116 | opp_overlap 3171249 3171254 3171257, overlap 3171251 3171257 GCATGCAAAATAGAA CAAGGGAGGC CCAG GCCTCCCTTG TCATTTCTATCTACC TERM 3715 3171277 - 3171254 - T 100 -16.8 -3.97622 | opp_overlap 3171254 3171251 3171257, overlap 3171249 3171257 GCATGCAAAATAGAA CAAGGGAGGC CCAG GCCTCCCTTG TCATTTCTATCTACC TERM 3716 3171274 - 3171257 - T 95 -12.7 -4.09656 | opp_overlap 3171257 3171254 3171251, overlap 3171254 3171249 TGCAAAATAGAACAA GGGAGGC CCAG GCCTCCC TTGTCATTTCTATCT TERM 3717 3171257 - 3171274 + T 86 -12.7 -3.67705 | opp_overlap 3171254 3171249 3171257, overlap 3171254 3171251 TGCAAAATAGAACAA GGGAGGC CCAG GCCTCCC TTGTCATTTCTATCT AHA_2823 3172106 - 3171345 - | hypothetical protein TERM 3718 3172163 - 3172123 - R 76 -9.8 -3.85698 | gap 2, overlap 3172124 3172157 GGGGTCCCTTATAAA GGCGCCGACCCCTGTGCTGC GAT GCAG-ACAGGAATCGG-GCT CATAACGCCGAGGCC TERM 3719 3172162 - 3172124 - R 81 -13.3 -2.91276 | gap 2, overlap 3172123 3172157 GGGTCCCTTATAAAG GCGCCGACCCCTGTGCTGC GAT GCAG-ACAGGAATCGG-GC TCATAACGCCGAGGC AHA_2824 3173597 - 3172254 - | transcriptional activator TERM 3720 3172749 - 3172772 + g 77 -2.2 -5.0538 | opp_overlap 3172755 GTAGTAGAGATCCTC GCGAAACAGG CCAT CCTGCACCGC TTTTTTCAGATCCCG AHA_2825 3174693 - 3173659 - | two-component sensor kinase protein TERM 3721 3174796 - 3174764 - R 100 -17.9 -4.62471 | opp_overlap 3174769 3174773 3174774 AATTTACATATAAAA TCAAAGCCTTGAAGC TAG GCGTCAAGGCTTTGA CCCTTATGCTTCCTT TERM 3722 3174769 - 3174791 + r 83 -12 -3.62859 | opp_overlap 3174764, overlap 3174773 3174774 ACATATAAAATCAAA GCCTTGAAGC TAG GCGTCAAGGC TTTGACCCTTATGCT AHA_2826 3176218 - 3174800 - | FleQ protein AHA_2827 3177336 - 3176500 - | topoisomerase DNA binding C4 zinc finger domain-containing protein AHA_2828 3177296 - 3178093 + | ACT domain-containing protein TERM 3723 3178254 - 3178278 + G 84 -13.5 -3.74519 | opp_overlap 3178252 3178254 AGGCAATGGACAAGA CGGTTCCGCTC ATC GAGCGGGTCCG TTTCCTGGGGATCTT ppk 3178169 - 3180238 + | polyphosphate kinase AHA_2830 3180228 - 3181718 + | exopolyphosphatase TERM 3724 3181742 - 3181759 + T 100 -12.7 -4.4267 | opp_overlap 3181742 CGGCGAGACAAAAAA GGCAGCC CACG GGCTGCC TTTTACATTTTCGGG TERM 3725 3181759 - 3181742 - T 100 -12.7 -5.36441 | opp_overlap 3181742 CGGCGAGACAAAAAA GGCAGCC CACG GGCTGCC TTTTACATTTTCGGG mgtE-1 3183126 - 3181783 - | magnesium transporter TERM 3726 3182891 - 3182844 - G 82 -14.2 -3.29144 | gap 1, overlap 3182883 CCAGCCGGCGCAGAA TGGCCAGCATGTCGCGACGGGGC ATG GCCCCCT-GCAACACGCTGACGA TGCTGGCATGCAGCC TERM 3727 3183619 - 3183591 - R 95 -18.2 -2.72379 | CCAAGCGGGTAACCA TCGCTCGCAGCC ATCAG GGCCGCGAGCGA TGGGTGACCCGTCAA flgL 3184839 - 3183631 - | flagellar hook-associated protein FlgL flgK 3186844 - 3184844 - | flagellar hook-associated protein FlgK flgJ 3187897 - 3186848 - | flagellar rod assembly protein/muramidase FlgJ TERM 3728 3187962 - 3187979 + r 74 -7.7 -4.19678 | ACCTCATTGCCGCCC GTGGCAA CCCC TTGCCGC TTTATTACAGTATGA flgI 3189081 - 3187984 - | flagellar basal body P-ring protein flgH 3189761 - 3189090 - | flagellar basal body L-ring protein TERM 3729 3189133 - 3189120 - G 72 -2.3 -4.68593 | GGGACCATTGAAAAA GCTGG TAAG CCACC CCTGTTCCTGGGTAT flgG 3190564 - 3189776 - | flagellar basal body rod protein FlgG flgF 3191325 - 3190579 - | flagellar basal-body rod protein FlgF TERM 3730 3191441 - 3191426 - R 100 -11.8 -4.76644 | opp_overlap 3191426 AATACCCATGAAAAA GGGCGC CGAA GCGCCC TTTGTTAACAAGAGA TERM 3731 3191426 - 3191441 + r 91 -11.8 -4.15044 | opp_overlap 3191426 AATACCCATGAAAAA GGGCGC CGAA GCGCCC TTTGTTAACAAGAGA flgE 3192795 - 3191461 - | flagellar hook protein FlgE TERM 3732 3191934 - 3191954 + g 79 -8.9 -4.26903 | opp_overlap 3191929 TGGTAATAATCCCGG CCGTCGTGC CAA GGGCGACGG TTTTGATCGGATCAG flgD 3193534 - 3192806 - | flagellar hook capping protein flgC 3193969 - 3193550 - | flagellar basal body rod protein FlgC TERM 3733 3193805 - 3193848 + g 85 -5.8 -5.02074 | overlap 3193810 CTTGTCCGACATGGC CTGATCCAGCTGGGCGGCAA AAAT TGGCCGCCTGGCATGGTAAG TTTTTTCCACGCTGG flgB 3194367 - 3193969 - | flagellar basal-body rod protein FlgB cheR-3 3195255 - 3194431 - | CheR methyltransferase SAM-binding domain-containing protein TERM 3734 3194849 - 3194865 + g 93 -7.9 -5.06451 | overlap 3194864 ACGATCTGCACCCCA CCTGGCA AGG TGCCCGG TTTTTTGACCTGCTG AHA_2844 3196185 - 3195274 - | CheV flgA 3196156 - 3197013 + | flagella basal body P-ring formation protein FlgA TERM 3735 3197320 - 3197280 - g 82 -6.1 -4.90455 | overlap 3197281 ACAGATGCAGAAAAA CCTCAACTCAGCCTCCACC GGC AATGAAAGCCGGGTCGAGA GCCTGAAGAAAGCCG flgM 3197104 - 3197424 + | anti-sigma-D factor flgN 3197424 - 3197837 + | flagellar protein FlgN AHA_2848 3198437 - 3197895 - | phosphodiesterase AHA_2849 3200211 - 3198448 - | periplasmic murein peptide-binding protein TERM 3736 3200204 - 3200232 + g 100 -8.1 -5.49729 | overlap 3200206 CGTATTGTATCGGGC TTGCCCAAGAGAT GGA GTCTCTCGGGCTA TTTTTTTCCGTAGTT TERM 3737 3200206 - 3200230 + g 89 -10.7 -4.37763 | overlap 3200204 TATTGTATCGGGCTT GCCCAAGAGAT GGA GTCTCTCGGGC TATTTTTTTCCGTAG TERM 3738 3200332 - 3200345 + G 71 -8.1 -3.86897 | TACGAGTGGCTGGCA CTGGC AGCA GCCAG TTTATGGGCGGTCGC AHA_2850 3200311 - 3201216 + | drug/metabolite exporter family protein AHA_2851 3201920 - 3201228 - | ribosomal small subunit pseudouridine synthase A TERM 3739 3202304 - 3202287 - g 71 -9.1 -3.72576 | opp_overlap 3202286 CTCGCCCGCAGCAAA CTGCCCG GCAT CGAGCAG GTCATCTCCCCCGAC AHA_2853 3202095 - 3203291 + | HD domain-containing protein AHA_2852 3203476 - 3203288 - | hypothetical protein AHA_2854 3204226 - 3203576 - | fructose-6-phosphate aldolase AHA_2855 3204355 - 3205251 + | pyruvate formate-lyase 2-activating enzyme AHA_2856 3205304 - 3207736 + | pyruvate formate-lyase TERM 3740 3207749 - 3207764 + F 80 -10.4 -3.85698 | opp_overlap 3207729 TGACGGGCCCCACCA GGGGCA GCTG TGCCCC TTTATGACCGGCAAG TERM 3741 3207967 - 3207957 - gf 70 -6.8 -4.07885 | GACCGCGCTCGAAAA GCAG GGG CTGC TCAAGCGGGTGCACG TERM 3742 3208070 - 3208050 - gf 76 -12.5 -2.71364 | overlap 3208035 CTACCTGCTCAAGGA GCGCCTCGC CGA GCGAGCCGC CCAGCTGGTAGAGGA AHA_2857 3207829 - 3208575 + | putative HTH-type transcriptional regulator YciT AHA_2858 3208505 - 3209596 + | drug/metabolite exporter family transporter TERM 3743 3210969 - 3210941 - g 95 -15.3 -4.09685 | overlap 3210943 CGGCACCCTGCAAAA CAGCCAGGGCCAG CCG CTGACCCTGGCCA TCACCTACACCACGG TERM 3744 3210967 - 3210943 - g 100 -17.9 -3.64716 | overlap 3210941 GCACCCTGCAAAACA GCCAGGGCCAG CCG CTGACCCTGGC CATCACCTACACCAC TERM 3745 3211118 - 3211101 - g 84 -2.7 -5.24531 | gap 1, opp_overlap 3211109, overlap 3211103 ATGCTGGAGAAAAAA CA-CCAGA GCG CCTGGATG GCCTGGTCAGGCAGC TERM 3746 3211115 - 3211103 - g 71 -5.5 -4.25873 | opp_overlap 3211109, overlap 3211101 GCTGGAGAAAAAACA CCAGA GCG CCTGG ATGGCCTGGTCAGGC AHA_2859 3209718 - 3211568 + | ABC-type oligopeptide transport system, periplasmic component TERM 3747 3211589 - 3211610 + T 100 -13 -5.40474 | opp_overlap 3211589 CGGCAGATAGAAAAA GACCCCGC ACACTG GCGGGGTC TTTTTTTGCAACCGT TERM 3748 3211610 - 3211589 - T 100 -13 -5.03994 | opp_overlap 3211589 CGGCAGATAGAAAAA GACCCCGC ACACTG GCGGGGTC TTTTTTTGCAACCGT AHA_2860 3212057 - 3211665 - | hypothetical protein TERM 3749 3212128 - 3212138 + r 78 -6.8 -4.61231 | opp_overlap 3212128 GTCCAGTATGAGAGA TCGG TCA CCGA TTTTTCGCGATCTCA AHA_2861 3212708 - 3212151 - | hypothetical protein AHA_2863 3212959 - 3213207 + | hypothetical protein AHA_2862 3213574 - 3213194 - | hypothetical protein TERM 3750 3213285 - 3213298 + g 86 -8.1 -4.55798 | opp_overlap 3213285 CAGGCAAACAGCAAA GGACC TTCG GGTCC TTTTACTTTGCCATC TERM 3751 3213298 - 3213285 - G 73 -8.1 -4.01603 | opp_overlap 3213285 CAGGCAAACAGCAAA GGACC TTCG GGTCC TTTTACTTTGCCATC TERM 3752 3213578 - 3213602 + r 100 -15.7 -4.28069 | opp_overlap 3213578 GTCCATAAACAAAAA GCCGTGGAACC AGA GGTACCACGGC TTTCTTAAATTCTGT TERM 3753 3213602 - 3213578 - R 100 -15.7 -5.38054 | opp_overlap 3213578 GTCCATAAACAAAAA GCCGTGGAACC AGA GGTACCACGGC TTTCTTAAATTCTGT AHA_2864 3213832 - 3213623 - | hypothetical protein TERM 3754 3213748 - 3213758 + g 72 -2.4 -4.72497 | opp_overlap 3213748 3213742, overlap 3213743 TGAAGTGAACGAAAA CGTC CGG GCCG TTTTCTTGCTGGATG TERM 3755 3213933 - 3213921 - R 73 -6.3 -4.49937 | opp_overlap 3213920 3213921 TGAACAACAGGAAAA GATGT AAA ACATC ATATTCATTGACATA TERM 3756 3214034 - 3214007 - R 100 -14.2 -3.97674 | GGATTACGCAAACAA TTTGTGCCCTGC CACG GCAGGGCACACA TGTCACAATACGGGG AHA_2865 3215137 - 3214037 - | pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component AHA_2866 3216120 - 3215134 - | pyruvate dehydrogenase E1 component, beta subunit AHA_2867 3217208 - 3216117 - | pyruvate dehydrogenase E1 component, alpha subunit TERM 3757 3217397 - 3217364 - R 85 -8.8 -4.52589 | overlap 3217369 TCGGCTGAGAGAAAA CGAAACAGGGAGCC GCATCG GGCTCCCTGTCAGG ATGAGGACGGGATCG TERM 3758 3217392 - 3217369 - R 100 -13.9 -4.30161 | overlap 3217364 TGAGAGAAAACGAAA CAGGGAGCC GCATCG GGCTCCCTG TCAGGATGAGGACGG AHA_2868 3218515 - 3217490 - | succinylglutamate desuccinylase AHA_2869 3219000 - 3218791 - | hypothetical protein tus 3219523 - 3220416 + | DNA replication terminus site-binding protein TERM 3759 3220482 - 3220511 + T 100 -20.9 -2.87344 | opp_overlap 3220482 3220485, overlap 3220485 GCACGAGCCAAATAA CAAGGGGAGCATC ATTG GATGCTCCCCTTG TCTGTAGCCCGAGTC TERM 3760 3220511 - 3220482 - T 100 -20.9 -3.97674 | opp_overlap 3220482 3220485, overlap 3220485 GCACGAGCCAAATAA CAAGGGGAGCATC ATTG GATGCTCCCCTTG TCTGTAGCCCGAGTC TERM 3761 3220508 - 3220485 - T 100 -16.8 -4.10744 | opp_overlap 3220482 3220485, overlap 3220482 CGAGCCAAATAACAA GGGGAGCATC ATTG GATGCTCCCC TTGTCTGTAGCCCGA TERM 3762 3220485 - 3220508 + T 100 -16.8 -3.58726 | opp_overlap 3220485 3220482, overlap 3220482 CGAGCCAAATAACAA GGGGAGCATC ATTG GATGCTCCCC TTGTCTGTAGCCCGA AHA_2871 3224381 - 3220539 - | SNF2 family helicase TERM 3763 3221494 - 3221508 + g 75 -3.4 -4.82667 | overlap 3221495 AACAGCAGCTTGGCC CGCTGG GTA CCGGCA TTTTTGATCTGCTGC TERM 3764 3224570 - 3224557 - R 100 -9.5 -5.61596 | opp_overlap 3224555 3224557, overlap 3224543 AGGCGCACAAAAAAA GGCGC CTGG GCGCC TCTTGATGGACATAT AHA_2872 3225249 - 3224596 - | multidrug resistance protein A TERM 3765 3224739 - 3224705 - G 91 -17 -3.35679 | GCGGGCGAGGCATAA CTGCTGGCGGGGGCCG CCT CGGCCAGCGCCTGCAG ATCCACCTCGCCACT TERM 3766 3225296 - 3225326 + r 89 -9 -4.56775 | gap 1 CCACTATCTTAGCCA TGGC-GCCTCTGC CGTCCA GCAGCGGCCGCCA TTTTTGCGAGGCGAT AHA_2873 3227131 - 3225401 - | lipid A core - O-antigen ligase TERM 3767 3225464 - 3225517 + g 83 -9.3 -4.25104 | gap 1, opp_overlap 3225464 3225468, overlap 3225465 3225469 CGAGCCGGTCAGCAA GGGATCACCCGGGTAGAGCGCCAGCG CCT CGC-GGCGCAGTACCCGGGCCTCCTC TTTTCGTCCCAGCGC TERM 3768 3225465 - 3225515 + g 81 -12.5 -3.73042 | gap 2, opp_overlap 3225464 3225468, overlap 3225464 3225469 GAGCCGGTCAGCAAG GGATCACCCGGGTAGAGCGCCAGCG CCT CGC-GGCGCAGTACCCGGGCC-TCC TCTTTTCGTCCCAGC TERM 3769 3225469 - 3225512 + g 70 -13 -2.96321 | gap 1, opp_overlap 3225468 3225464, overlap 3225465 3225464 CGGTCAGCAAGGGAT CACCCGGGTAGAGCGCCAGCG CCT CGC-GGCGCAGTACCCGGGCC TCCTCTTTTCGTCCC TERM 3770 3226783 - 3226754 - G 73 -11.5 -3.62616 | gap 1 CAGCAGCAGATAGAA CAGCTGGTCACGAG ACG CCCGC-ACCAGCTG CCACTGGTAGAGACA TERM 3771 3227163 - 3227189 + r 74 -8 -4.03586 | opp_overlap 3227163 ACCAAAACAAAAAAA GCCGCGATAG CAGAACA CTATCACGGC TTGTTGTCTTTACGA TERM 3772 3227189 - 3227163 - R 100 -11.6 -6.11229 | opp_overlap 3227163 ACCAAAACAAAAAAA GCCGCGATAGCA GAA CACTATCACGGC TTGTTGTCTTTACGA AHA_2874 3229275 - 3227224 - | YjbH AHA_2875 3230063 - 3229305 - | putative periplasmic protein AHA_2876 3230749 - 3230060 - | hypothetical protein TERM 3773 3230795 - 3230765 - R 100 -17 -4.98917 | opp_overlap 3230761 3230770, overlap 3230767 GAAAAGAGAATAAAA GATAAGGCTGCTCG GTT CGAGCAGCCTTATT GGACTTATTTGGTCG TERM 3774 3230793 - 3230767 - R 100 -19.6 -4.07559 | opp_overlap 3230761 3230770, overlap 3230765 AAAGAGAATAAAAGA TAAGGCTGCTCG GTT CGAGCAGCCTTA TTGGACTTATTTGGT TERM 3775 3230770 - 3230790 + r 100 -16.9 -3.71353 | opp_overlap 3230767 3230765, overlap 3230761 GAGAATAAAAGATAA GGCTGCTCG GTT CGAGCAGCC TTATTGGACTTATTT AHA_2877 3233370 - 3231196 - | tyrosine-protein kinase TERM 3776 3231607 - 3231555 - G 71 -9.3 -3.80768 | GACAGACAAAATCAA GGCCG-TCAAACCCGGTCTGACTCA CCACT TGCGTCAAATCGG-TCTGACCGGCC AGATAGGAGCTCAAG TERM 3777 3233150 - 3233163 + g 85 -3.1 -5.252 | gap 1, overlap 3233145 3233142 3233151 ATGTCCCCAAGCAGT G-CAGC ACC GCTGGC TTTTTTCTCCACCTG AHA_2878 3233861 - 3233433 - | low molecular weight protein-tyrosine-phosphatase ptp TERM 3778 3234023 - 3234005 - R 76 -9.5 -3.82419 | AAAAAGCAGGAACAA GGGAGGC ACAAG GCCCCCC CCCTAAATTCCATCT AHA_2879 3235213 - 3234098 - | capsular polysaccharide transport protein TERM 3779 3235539 - 3235512 - R 81 -12.7 -3.07043 | opp_overlap 3235505 3235505, overlap 3235528 TTCATTATTGTAACA TGCGGTTCCCC TACAAG GGGGAACCGCT ATCGACATATTAGTC AHA_2880 3236715 - 3235549 - | UDP-glucose 6-dehydrogenase TERM 3780 3236104 - 3236089 - G 83 -5.4 -5.0133 | opp_overlap 3236099 GAGTTCGTTAAAAAA GGCAAC TCTC ATTGCC AAATAAGTATTGGCA AHA_2881 3237741 - 3236728 - | nucleotide sugar epimerase AHA_2882 3238838 - 3237765 - | hypothetical protein AHA_2883 3239671 - 3238865 - | glycosyl transferase, group 2 family protein AHA_2884 3240494 - 3239673 - | putative glycosyl transferase AHA_2885 3241592 - 3240498 - | glycosyl transferase, group 1 family protein AHA_2886 3242869 - 3241655 - | polysaccharide biosynthesis protein TERM 3781 3241719 - 3241708 - G 100 -4.4 -5.83226 | opp_overlap 3241708 3241716 AATCTAAGAAAAAAA TTGC TCTT GCAA TTGTAATTGCTATTG AHA_2887 3243986 - 3242871 - | NAD(P) transhydrogenase subunit alpha TERM 3782 3243926 - 3243937 + g 93 -3 -5.62552 | CAAACAAAGCCGGGT GAAT AGGA ATTC TTTTTTCATTTTTTT AHA_2888 3245001 - 3243979 - | hypothetical protein wecA 3246139 - 3245060 - | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 3783 3246164 - 3246188 + r 93 -4.3 -5.65927 | gap 1, overlap 3246153 ATCCCTTGATAATTT CAGGTTCGCT TCTGAT GGCG-ACCTG TTTTTTATTTGCCTG TERM 3784 3246649 - 3246610 - R 72 -12.3 -2.71731 | gap 2, opp_overlap 3246605 3246604 GCTATGTCCCAATTA CGT-G-TTGCATGGGGCGC CCCA GCGCCTCATGCAAGCAACG TGAGATATTCACTTC AHA_2890 3247573 - 3246596 - | hypothetical protein TERM 3785 3247210 - 3247193 - G 74 -2.6 -4.82901 | opp_overlap 3247182 3247181, overlap 3247195 GTGGCGCCATAAAAA GGCGGT GTTTTT ACCGAC CCCACAGCGGAGCGC TERM 3786 3247634 - 3247651 + r 79 -12.7 -2.91144 | opp_overlap 3247634, overlap 3247631 CAGAGCCAAAAAAAA GCGCCCA ATGA TGGGCGC TCATTTACAAACTCA TERM 3787 3247651 - 3247634 - R 100 -12.7 -5.83822 | opp_overlap 3247634 3247631 CAGAGCCAAAAAAAA GCGCCCA ATGA TGGGCGC TCATTTACAAACTCA AHA_2891 3249649 - 3247664 - | WbgZ AHA_2892 3250671 - 3249646 - | glycosyl transferase, group 4 family protein AHA_2893 3251675 - 3250671 - | UDP-glucose 4-epimerase AHA_2894 3252765 - 3251641 - | glycosyl transferase, group 1 TERM 3788 3252482 - 3252461 - GR 72 -2.3 -4.7629 | GGATTAACCCAAAAA TGCACTATA TCCA TATAAGGCA AAGGAAAATGATAAT AHA_2895 3253231 - 3252743 - | GDP-mannose mannosyl hydrolase TERM 3789 3253102 - 3253116 + g 73 -6.4 -4.36592 | opp_overlap 3253102 CCAAGACAAACCAAT GATCAG CTG CTGGTC TATTTTTTCTTAGAC AHA_2896 3253863 - 3253246 - | acetyltransferase TERM 3790 3253616 - 3253600 - G 72 -12.3 -3.34088 | opp_overlap 3253599 3253598 AGTAGCAGAGATCAA GGTGGCA ACT TGCCACC CCATTTTCTCCAGCA TERM 3791 3253793 - 3253777 - G 70 -7.3 -4.09554 | ATCAATAAAACATAA CGTTAAG AAC CCTAACG ACAATGCTACATCAG AHA_2897 3255508 - 3253868 - | glycosyl transferase, group 1 family protein AHA_2898 3257784 - 3255499 - | putative glycosytransferase TERM 3792 3257059 - 3257088 + g 91 -5 -5.37345 | TTGCATGTTATCTGA GTGCTCTTCTTT AGATAC AAAGCCGAGCAC TTTTTTATCATTAAC AHA_2899 3258539 - 3257781 - | RfbE, O-antigen export system ATP-binding protein RfbE AHA_2900 3259321 - 3258536 - | ABC transporter, permease protein TERM 3793 3259298 - 3259281 - G 74 -4.9 -4.57837 | AGATGCTGCCAAAAA TATCTAG CATC CCAGATA CCTCGAATGTAATAA TERM 3794 3259373 - 3259343 - R 77 -8.5 -4.19817 | opp_overlap 3259346, overlap 3259346 TCCATTTATTTAAAA TAACCCTTCAT TCATAAAAT ATGAAGGGTTA CCTATCTGAACACTA AHA_2901 3260474 - 3259386 - | perosamine synthetase, Per protein gmd 3261598 - 3260477 - | GDP-mannose 4,6-dehydratase AHA_2903 3262977 - 3261613 - | phosphomannomutase TERM 3795 3262363 - 3262373 + g 77 -4 -4.91712 | AAAATTACCATTTTC TTCA TGA TGAA TTTTTATAAATTCGA AHA_2904 3264405 - 3263008 - | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 3796 3264175 - 3264160 - G 71 -6.2 -4.30719 | opp_overlap 3264160 GGGTTCCAGAATAAA TGAAGT CTGA ACTTCA TTACTATTCACCTCT TERM 3797 3264235 - 3264219 - G 71 -5.1 -4.41348 | GTGTTTTGAAATAAA GATCTCT GTT AGTGATC GTCAAAACTTCTCTG rfbC-1 3264971 - 3264408 - | dTDP-4-dehydrorhamnose 3,5-epimerase rfbA 3265912 - 3265028 - | glucose-1-phosphate thymidylyltransferase TERM 3798 3265520 - 3265510 - G 78 -5.4 -4.7173 | opp_overlap 3265510 CATGATAGGCAAAAA TGGT AGC ACCA CTGTCTTTACTTGCT TERM 3799 3265651 - 3265637 - G 78 -7.1 -4.64861 | opp_overlap 3265640 TTCCCCCAAAATAAA GGCCT GCGCT AGGCC ATCCGGGCTTGGCTG TERM 3800 3265965 - 3265951 - R 100 -5.7 -5.86976 | opp_overlap 3265950 CTACAAAAGAAAAAA GTGGT TTGAT ACCAC ACTCTTCTGTTTTAT rfbD 3266912 - 3266025 - | dTDP-4-dehydrorhamnose reductase rfbB 3267997 - 3266912 - | dTDP-glucose 4,6 dehydratase TERM 3801 3268233 - 3268271 + r 78 -13.2 -2.53876 | opp_overlap 3268223 AAGATTGCTATCTGC TTTGCCTTCAGCTTGGTC ATT GCACAAGCTGAAGGCATA TAAATTGCCATGCCC TERM 3802 3268672 - 3268683 + r 70 -3 -4.72272 | ATGTCATTTGGGCTT CATA TGTA TATG TTTTTGCTCAAAAGA TERM 3803 3268726 - 3268701 - R 100 -20.5 -4.64861 | opp_overlap 3268700 3268701 TTTGCTCAAAAGAAA CGGGGCGAACC CGAT GGTTCGCCCCG TATTGACCTGCTGAT TERM 3804 3268701 - 3268726 + r 100 -20.5 -3.07222 | opp_overlap 3268701, overlap 3268700 TTTGCTCAAAAGAAA CGGGGCGAACC CGAT GGTTCGCCCCG TATTGACCTGCTGAT AHA_2909 3270174 - 3268759 - | outer membrane protein OprM TERM 3805 3269920 - 3269974 + g 81 -12.9 -3.78934 | GGCCGCCCGCTGGAT CCGGTATCTG-GCCTCGTAGGCCTCCA CGT TGAGGGCC-GCGATGCGCAGATCCCGG TTGTTCTCAAGAGCC AHA_2910 3273316 - 3270167 - | AcrB protein TERM 3806 3271319 - 3271284 - G 73 -6.6 -4.36729 | AGGAAGAAGTCAAAA CCGGTCGCCGTTCCCA GTTC CGGGATCGGAGGCAGG TTGAAGGCGAACACC acrA 3274527 - 3273334 - | acriflavin resistance protein A TERM 3807 3274604 - 3274640 + H 89 -3.2 -5.46698 | gap 1, opp_overlap 3274609 3274611, overlap 3274609 AAATCGGAAAGATGA GGCAATATACATACATT CATA AATGTATGTA-AGTGAC TTTTTTACTTTTACA AHA_2912 3274670 - 3275311 + | TetR family regulatory protein TERM 3808 3275387 - 3275406 + GF 76 -12.2 -3.08966 | overlap 3275377 3275401 ATCTCCTTCCATCAC TTTGGCGC CCAG GCGCCAAA TTGGCTCAAGTTTGC AHA_2913 3274867 - 3276066 + | hypothetical protein AHA_2914 3276262 - 3277440 + | proton/sodium-glutamate symport protein TERM 3809 3277449 - 3277493 + T 100 -18.1 -3.93367 | opp_overlap 3277450 3277462, overlap 3277450 3277462 CGCCTGATAGAGCAA GCAGATAAAAAAACGGGAGCC ATC GGCTCCCGTTTTTTTATTAGG TGTTTTCTTCCGGCG TERM 3810 3277492 - 3277450 - T 100 -19.4 -2.58999 | opp_overlap 3277449 3277450 3277462, overlap 3277462 GCCTGATAGAGCAAG CAGATAAAAAAACGGGAGCC ATC GGCTCCCGTTTTTTTATTAG GTGTTTTCTTCCGGC TERM 3811 3277450 - 3277492 + T 100 -21.6 -2.95538 | opp_overlap 3277450 3277462, overlap 3277449 3277462 GCCTGATAGAGCAAG CAGATAAAAAAACGGGAGCC ATC GGCTCCCGTTTTTTTATTAG GTGTTTTCTTCCGGC TERM 3812 3277462 - 3277480 + T 100 -16 -5.8187 | opp_overlap 3277462 3277450, overlap 3277450 3277449 AAGCAGATAAAAAAA CGGGAGCC ATC GGCTCCCG TTTTTTTATTAGGTG TERM 3813 3277480 - 3277462 - T 100 -16 -5.75478 | opp_overlap 3277450 3277449 3277462, overlap 3277450 AAGCAGATAAAAAAA CGGGAGCC ATC GGCTCCCG TTTTTTTATTAGGTG AHA_2915 3277857 - 3277489 - | glyoxalase family protein TERM 3814 3277901 - 3277936 + r 90 -16.2 -2.79915 | opp_overlap 3277903 CGGGGTAAAGCCCCA AAGTCTGACCTGCGCA AAAC TGCGCAGGTCAGACAC TATCATGGCGTCCCT TERM 3815 3277934 - 3277903 - R 100 -23.2 -3.63968 | opp_overlap 3277901 GGGTAAAGCCCCAAA GTCTGACCTGCGCA AAAC TGCGCAGGTCAGAC ACTATCATGGCGTCC tesB 3278843 - 3277971 - | acyl-CoA thioesterase II TERM 3816 3278991 - 3279011 + r 91 -15.4 -3.01712 | opp_overlap 3278991 3279004 AGGCGCCAACAAAAA GGCCCGCC GAAGA GGCGGGCC TGTTGCAGGGCGACC TERM 3817 3279011 - 3278991 - R 100 -15.4 -5.06816 | opp_overlap 3278991, overlap 3279004 AGGCGCCAACAAAAA GGCCCGCC GAAGA GGCGGGCC TGTTGCAGGGCGACC AHA_2917 3279967 - 3279044 - | ribosomal large subunit pseudouridine synthase B scpB 3280556 - 3279960 - | segregation and condensation protein B AHA_2919 3281548 - 3280592 - | segregation and condensation protein A TERM 3818 3281385 - 3281352 - GR 93 -12.4 -4.24342 | GGCGGGATGAACAAA TCCTGGGGCAGCTC GTGATA GGGCTGCCCCAGCA CCCGGGCGATGGGAG AHA_2920 3282185 - 3281496 - | Sua5/YciO/YrdC/YwlC family protein AHA_2921 3283100 - 3282219 - | phosphotransferase domain-containing protein AHA_2922 3283240 - 3283287 + | putative trp operon leader peptide TERM 3819 3283372 - 3283353 - f 100 -15 -5.33026 | opp_overlap 3283353 GAACCCAAAGAAAAA GCCCGCTG ACCC CAGCGGGC TTTTTTATTATCCGG TERM 3820 3283353 - 3283372 + F 100 -15 -5.55769 | opp_overlap 3283353 GAACCCAAAGAAAAA GCCCGCTG ACCC CAGCGGGC TTTTTTATTATCCGG trpE 3283538 - 3285172 + | anthranilate synthase component I AHA_2924 3285165 - 3285764 + | anthranilate synthase component II trpD 3285775 - 3286803 + | anthranilate phosphoribosyltransferase TERM 3821 3287058 - 3287072 + G 71 -5.6 -4.32177 | GTCGGGGTGCTCAAG GCCGGT TCC ACCCGC TTTATTCTGGAGTGC trpCF 3286914 - 3288299 + | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase TERM 3822 3289492 - 3289481 - g 76 -5.8 -4.67234 | AGTGAACCGGAAAAA GAGC AGGT GCTC ATCGTCAACCTCTCC trpB 3288380 - 3289573 + | tryptophan synthase subunit beta trpA 3289570 - 3290376 + | tryptophan synthase, alpha subunit TERM 3823 3290413 - 3290443 + F 100 -11.2 -5.37865 | opp_overlap 3290419, overlap 3290419 CATTGACCATGTCTG CAAAAAGGGAGCCT GAT AGGCTCCCTTTCTA TTTTTTGCTTGTTGC TERM 3824 3290437 - 3290419 - f 100 -14.6 -4.57569 | opp_overlap 3290413 3290419 CCATGTCTGCAAAAA GGGAGCCT GAT AGGCTCCC TTTCTATTTTTTGCT TERM 3825 3290419 - 3290437 + F 100 -14.6 -4.66347 | opp_overlap 3290419, overlap 3290413 CCATGTCTGCAAAAA GGGAGCCT GAT AGGCTCCC TTTCTATTTTTTGCT TERM 3826 3290664 - 3290648 - f 84 -13.7 -3.08679 | opp_overlap 3290659 TCGCCGCATGGAACA CGAGGGC TCC GCCCTCG ACAGGGTTTCGCCCG TERM 3827 3290672 - 3290702 + F 72 -2.4 -4.86731 | overlap 3290672 3290673 CGCCCTCGACAGGGT TTCGCCCGCCCT TCGGGCC GGGGCGAGTGAC TTTTCTTTGCGCGGC TERM 3828 3290889 - 3290907 + F 76 -10.2 -3.66666 | opp_overlap 3290887 3290886 TCTCGCGCCAAATTG GGTCGAGC TGT GCTCGCCC TTTCCCGATTTTGCC TERM 3829 3291960 - 3291944 - g 84 -2.3 -5.252 | opp_overlap 3291953 CACCGCCATAAAAAA CCAAAAA GAT TTCTTAG TAAGAGAGTTATTAC AHA_2929 3291480 - 3292478 + | patatin AHA_2930 3293943 - 3293338 - | hypothetical protein AHA_2931 3294085 - 3294327 + | hypothetical protein TERM 3830 3294371 - 3294401 + F 79 -11.1 -3.64682 | opp_overlap 3294379, overlap 3294372 3294377 CCGCCGCCATGCTGT TCAGACCACCGGC CTTGC GCCGGTGTTCTGC TTTGGGCCTTTCATC TERM 3831 3294372 - 3294400 + F 83 -14.6 -2.78327 | opp_overlap 3294379, overlap 3294371 3294377 CGCCGCCATGCTGTT CAGACCACCGGC CTTGC GCCGGTGTTCTG CTTTGGGCCTTTCAT TERM 3832 3294377 - 3294395 + F 81 -11.7 -3.60419 | opp_overlap 3294379, overlap 3294372 3294371 CCATGCTGTTCAGAC CACCGGC CTTGC GCCGGTG TTCTGCTTTGGGCCT AHA_2932 3294525 - 3295067 + | hypothetical protein TERM 3833 3295096 - 3295125 + T 76 -12.3 -3.13853 | opp_overlap 3295102, overlap 3295102 CACCTCTTCGCCATA AAAAAACCTCTGC CCAG GCAGAGGTTTTTG CTTTTCGATGCTTAC TERM 3834 3295119 - 3295102 - T 100 -11.3 -5.60993 | opp_overlap 3295096 3295102 TTCGCCATAAAAAAA CCTCTGC CCAG GCAGAGG TTTTTGCTTTTCGAT TERM 3835 3295102 - 3295119 + T 100 -11.3 -5.10154 | opp_overlap 3295102, overlap 3295096 TTCGCCATAAAAAAA CCTCTGC CCAG GCAGAGG TTTTTGCTTTTCGAT AHA_2933 3295580 - 3295137 - | inhibitor of vertebrate lysozyme TERM 3836 3295740 - 3295714 - R 91 -17.2 -2.82015 | GCCAGATGGACGACA CCCCGCCGCGCC AGT GGCGAGACGGGG TGTACATGGGGGCAA AHA_2934 3296974 - 3295763 - | nucleoside permease NupC TERM 3837 3297261 - 3297225 - H 80 -5.1 -4.96848 | opp_overlap 3297236 3297237, overlap 3297237 GCCGTCACAGAAAAA GCGGTAAAACGATTGGC CCC GCCAACTTTTTCACGGC AGCGCTGAGCGTTAC TERM 3838 3297236 - 3297250 + H 71 -4.2 -4.56597 | opp_overlap 3297225 3297237, overlap 3297237 AAAAGCGGTAAAACG ATTGGC CCC GCCAAC TTTTTCACGGCAGCG AHA_2935 3297650 - 3298612 + | transporter TERM 3839 3298689 - 3298705 + F 100 -10.8 -5.18371 | opp_overlap 3298689 CCAGCCCCTAACCAA CCCGCC CAACC GGCGGG TTTTATTTTATCCGC TERM 3840 3298705 - 3298689 - f 73 -10.8 -3.34344 | opp_overlap 3298689 CCAGCCCCTAACCAA CCCGCC CAACC GGCGGG TTTTATTTTATCCGC tauA 3298985 - 3299959 + | taurine ABC transporter, periplasmic binding protein tauB 3299983 - 3300750 + | taurine transporter ATP-binding subunit TERM 3841 3301469 - 3301443 - g 72 -12.2 -3.32844 | opp_overlap 3301446 3301456 GGCTTCATGGTACAA GCCGCCGGCGAG TTT CTCGCCACCGAC GTGGTGCTGGCGGGC tauC 3300747 - 3301577 + | taurine transporter subunit tauD 3301574 - 3302428 + | taurine dioxygenase TERM 3842 3302742 - 3302731 - g 72 -4.4 -4.66535 | overlap 3302734 AATCTGGAAAAGAAA GAAG AGCC CTTC CAGGCTCGCCATATT TERM 3843 3302749 - 3302734 - g 76 -6.8 -4.43397 | overlap 3302731 CTGGAAAAGAAAGAA GAGCCC TTCC AGGCTC GCCATATTCGCACCG AHA_2940 3302680 - 3304344 + | secretory tripeptidyl aminopeptidase, putative TERM 3844 3304392 - 3304410 + T 100 -13.8 -3.96148 | opp_overlap 3304392 ACTGCCCAACAAAAA GCCCGCCG AAT TGGCGGGC TTTCTCATGCAGGCA TERM 3845 3304410 - 3304392 - T 100 -13.1 -5.06816 | opp_overlap 3304392 ACTGCCCAACAAAAA GCCCGCC GAATT GGCGGGC TTTCTCATGCAGGCA AHA_2941 3305794 - 3304433 - | inner membrane transport protein YajR TERM 3846 3305455 - 3305426 - G 82 -14.3 -3.34962 | gap 1, overlap 3305428 GGTGAGATCCGACAA GAGCGCCATCACGG CGG CCGAGATGGCGC-C GCTGCCCTGCAGAGC TERM 3847 3305454 - 3305428 - G 91 -18 -3.24365 | overlap 3305426 TGAGATCCGACAAGA GCGCCATCACGG CGG CCGAGATGGCGC CGCTGCCCTGCAGAG TERM 3848 3305723 - 3305711 - G 70 -7.7 -3.99324 | overlap 3305714 CGGCAGCACCATAAA CATGC CGA GCATG CGCAGCGAGAAAACG TERM 3849 3305775 - 3305737 - G 84 -8.7 -4.42386 | gap 1, overlap 3305738 3305739 TGCGCAGCGAGAAAA CG-GAGCCGAGCGCCCAG GTGG CACGGCGCTCGCCCCTCG TCATGGTGAAATCAT TERM 3850 3305900 - 3305929 + r 86 -12.1 -3.83375 | opp_overlap 3305902, overlap 3305901 3305904 GGGCGGCCCCATAAT AACAGAGCCGGGA AGGT TCCCGGCTCTGGA TTCTATTGATTTTCC TERM 3851 3305901 - 3305928 + r 87 -15.6 -2.8894 | opp_overlap 3305902, overlap 3305900 3305904 GGCGGCCCCATAATA ACAGAGCCGGGA AGGT TCCCGGCTCTGG ATTCTATTGATTTTC TERM 3852 3305927 - 3305902 - R 100 -19.1 -3.78934 | opp_overlap 3305901 3305900 3305904 GCGGCCCCATAATAA CAGAGCCGGGA AGGT TCCCGGCTCTG GATTCTATTGATTTT TERM 3853 3305904 - 3305925 + r 85 -15.9 -2.6737 | opp_overlap 3305902, overlap 3305901 3305900 GGCCCCATAATAACA GAGCCGGGA AGGT TCCCGGCTC TGGATTCTATTGATT cyoE 3306880 - 3305984 - | protoheme IX farnesyltransferase AHA_2943 3307224 - 3306892 - | cytochrome o ubiquinol oxidase subunit IV cyoC 3307836 - 3307225 - | cytochrome o ubiquinol oxidase subunit III AHA_2945 3309817 - 3307841 - | ubiquinol oxidase polypeptide I TERM 3854 3308041 - 3308054 + g 72 -3.7 -4.61231 | AGGCGGCGATGATGA CGCCG GCAC CGGAG TTTTTCGGCATGTGG AHA_2946 3310860 - 3309817 - | ubiquinol oxidase polypeptide II TERM 3855 3310098 - 3310108 + g 73 -6.8 -4.32048 | opp_overlap 3310097 CGCTGGCGAAATACT CCAC CGG GTGG TTTTCGCTCTTCTTG AHA_2947 3311497 - 3313422 + | twin-arginine translocation pathway signal TERM 3856 3314038 - 3314018 - g 79 -8.9 -4.2828 | opp_overlap 3314028 CGGCATGCAGGAAAA GGCCCTGAC CGA GGCAGAGCC CCTCTATCTGAGCGG AHA_2948 3313419 - 3314618 + | cytochrome c family protein TERM 3857 3314660 - 3314640 - T 100 -18.3 -4.02108 | opp_overlap 3314640 CCGACCATAACGAAA CGGGCCTCC AGT GGAGGCCCG TTTGCTATGTGAGTG TERM 3858 3314640 - 3314660 + T 100 -18.3 -3.89212 | opp_overlap 3314640 CCGACCATAACGAAA CGGGCCTCC AGT GGAGGCCCG TTTGCTATGTGAGTG AHA_2949 3315001 - 3314681 - | hypothetical protein AHA_2950 3316106 - 3315138 - | inosine-uridine preferring nucleoside hydrolase superfamily protein AHA_2951 3316318 - 3316947 + | hypothetical protein AHA_2952 3317176 - 3316973 - | hypothetical protein TERM 3859 3317346 - 3317330 - R 100 -15.1 -5.28778 | opp_overlap 3317330 AGCAGGCACAAAAAA GCCGGGC AGT GCCCGGC TTCTGGGTCGACAAG TERM 3860 3317330 - 3317346 + r 95 -15.1 -3.35679 | opp_overlap 3317330 AGCAGGCACAAAAAA GCCGGGC AGT GCCCGGC TTCTGGGTCGACAAG azu 3317808 - 3317368 - | azurin TERM 3861 3318799 - 3318779 - g 74 -10.4 -3.68936 | CAGCAAGGGCAACAA CGCCAAGG GCAAG CCCTGGCG GGTGGCCATCGTCGA AHA_2954 3318138 - 3319172 + | thiamine biosynthesis lipoprotein ApbE AHA_2955 3320488 - 3319283 - | major facilitator family transporter TERM 3862 3320601 - 3320586 - H 100 -8.2 -5.42259 | overlap 3320587 CCAGCCCGAAAAAAA CCGCCC GAGG GGGCGA ACTCAGCACCGGTCG TERM 3863 3320600 - 3320587 - H 76 -9.5 -3.84633 | overlap 3320586 CAGCCCGAAAAAAAC CGCCC GAGG GGGCG AACTCAGCACCGGTC AHA_2956 3320617 - 3322461 + | TPR repeat-containing response regulator AHA_2957 3322516 - 3323478 + | putative potassium channel protein TERM 3864 3323488 - 3323521 + F 83 -13.1 -3.19192 | gap 1 CGTTGAGCCCGCTAT GGCGGGCGGCC-CGTC CCG GATGTGGCCCCTCGCC TTCACTTGCATCCAC xth 3323590 - 3324396 + | exodeoxyribonuclease III TERM 3865 3324432 - 3324406 - f 100 -16.6 -3.56325 | opp_overlap 3324410 GCCTGATAACGACAA CAGAGGGGGCAT TTG AAGCCCCCTCTG TGACCAAGCCCCCAC TERM 3866 3324719 - 3324692 - f 100 -9.1 -5.1356 | gap 1 GTTCATGAAGAAAAA GGCTGG-GCGCG GCAAT CGCGCACCATCC CACAGGAGTGTGATG AHA_2959 3324735 - 3325934 + | acriflavin resistance protein A TERM 3867 3328564 - 3328539 - g 73 -8.9 -3.99324 | gap 1 GCCTATCAGGAGAAA GCGGCCGCCGGC AGT GCGGGC-ACCGC GTTCGGCTTCGGCAT AHA_2960 3325944 - 3329072 + | RND efflux transporter TERM 3868 3329099 - 3329077 - f 83 -14.8 -2.53911 | opp_overlap 3329079 CCAAGTCGTAAGTCA CAGCCCCCGC CAT GCGGGGGCTT TTTTTATCCGCCAGG TERM 3869 3329079 - 3329097 + F 100 -17.4 -5.60993 | opp_overlap 3329077 AAGTCGTAAGTCACA GCCCCCGC CAT GCGGGGGC TTTTTTTATCCGCCA AHA_2961 3329088 - 3329684 + | hypothetical protein TERM 3870 3330191 - 3330175 - g 80 -5.7 -4.77036 | overlap 3330177 GTCTATGAGGAAAAA CAGGGCG GCT CACCCGG CACAGTCACCATCAA AHA_2962 3329986 - 3331485 + | copper/silver resistance periplasmic protein TERM 3871 3331586 - 3331597 + G 73 -3.6 -4.78107 | ATTATTCGCTGGTCA GTGG GCAA CCGC TTTTTGGTGCTGCTG AHA_2963 3331559 - 3334687 + | cation efflux system protein CusA AHA_2964 3334692 - 3335108 + | secretion protein HlyD TERM 3872 3335151 - 3335129 - T 100 -13.4 -4.65916 | opp_overlap 3335131, overlap 3335131 GTCATTTCAATAAAA GACGGCGGGA TCA TCCCGCCGTT TTCTTTTACTGCGCT TERM 3873 3335131 - 3335149 + T 100 -16 -5.13722 | opp_overlap 3335131 3335129 CATTTCAATAAAAGA CGGCGGGA TCA TCCCGCCG TTTTCTTTTACTGCG TERM 3874 3335149 - 3335131 - T 100 -16 -3.94438 | opp_overlap 3335131, overlap 3335129 CATTTCAATAAAAGA CGGCGGGA TCA TCCCGCCG TTTTCTTTTACTGCG AHA_2965 3336003 - 3335215 - | hypothetical protein TERM 3875 3336218 - 3336182 - R 100 -18.8 -4.36914 | gap 1, overlap 3336185 GCTTGGCGTATAAAA GAGCAGGGCGCAGGAGG AAAC CCGCCTGCGCCCTG-TC ACTGCCGCACCATCA TERM 3876 3336216 - 3336185 - R 100 -21.6 -2.8733 | overlap 3336182 TGGCGTATAAAAGAG CAGGGCGCAGGAGG AAAC CCGCCTGCGCCCTG TCACTGCCGCACCAT AHA_2966 3337925 - 3336231 - | decarboxylase, group II TERM 3877 3338047 - 3338076 + r 78 -12.3 -3.27406 | gap 1, opp_overlap 3338053, overlap 3338038 3338051 3338053 GCGGACGGCGGCTGG CAAAA-AGGCGCCT TTC GGGCGCCTCTTTTG ATTTTGTGATCCACC TERM 3878 3338051 - 3338071 + r 93 -8.9 -4.74012 | opp_overlap 3338053, overlap 3338038 3338047 3338053 ACGGCGGCTGGCAAA AAGGCGCCT TTC GGGCGCCTC TTTTGATTTTGTGAT TERM 3879 3338069 - 3338053 - R 95 -10.8 -4.56597 | opp_overlap 3338038 3338051 3338047 3338053 GGCGGCTGGCAAAAA GGCGCC TTTCG GGCGCC TCTTTTGATTTTGTG TERM 3880 3338053 - 3338069 + r 85 -11.5 -3.96876 | opp_overlap 3338053, overlap 3338038 3338051 3338047 GGCGGCTGGCAAAAA GGCGCCT TTC GGGCGCC TCTTTTGATTTTGTG TERM 3881 3338130 - 3338112 - R 77 -4.4 -4.83615 | overlap 3338113 CATCGGCGAGAAAAA CGTCAGCG CAG CGCCGCCA GCAACCAGCGAGAGA lplA 3339130 - 3338114 - | lipoate-protein ligase A TERM 3882 3338201 - 3338177 - G 79 -13.5 -3.53012 | CTCGCGGGCCGCAAA CTCGCTGCGCC ACT GGCGCAGCAGG TCGTAGAGGGCATCG AHA_2968 3339575 - 3342004 + | PAS/GGDEF domain-containing protein TERM 3883 3342014 - 3341996 - T 83 -12.4 -3.72576 | TTCCCGCTGATGAAA GGACGCTG ACC CAGCGCCC CAGCCACCTGAACGT TERM 3884 3342039 - 3342062 + T 93 -16.8 -2.96274 | opp_overlap 3342039 3342042, overlap 3342042 GAACGTGTGAAGCGA GAAGGGCCAC CGAA GTGGCCCTTC TGTCATTGTGCGCCC TERM 3885 3342062 - 3342039 - T 89 -16.8 -2.53213 | opp_overlap 3342039 3342042, overlap 3342042 GAACGTGTGAAGCGA GAAGGGCCAC CGAA GTGGCCCTTC TGTCATTGTGCGCCC TERM 3886 3342059 - 3342042 - T 84 -12.7 -3.41878 | opp_overlap 3342042 3342039, overlap 3342039 CGTGTGAAGCGAGAA GGGCCAC CGAA GTGGCCC TTCTGTCATTGTGCG TERM 3887 3342042 - 3342059 + T 86 -12.7 -3.62644 | opp_overlap 3342039 3342042, overlap 3342039 CGTGTGAAGCGAGAA GGGCCAC CGAA GTGGCCC TTCTGTCATTGTGCG AHA_2969 3345274 - 3342065 - | AcrB/AcrD/AcrF family transporter AHA_2970 3346304 - 3345267 - | AcrA/AcrE family protein AHA_2971 3346796 - 3346341 - | YeeE/YedE family protein TERM 3888 3346426 - 3346406 - G 74 -5.3 -4.5774 | overlap 3346408 GATCAACAAGCAAAA TCCCGGCCA CCA TGGCGGCGA CAAACAACAGTACCA AHA_2972 3347211 - 3346801 - | YeeE/YedE AHA_2973 3347528 - 3347211 - | nodulation protein NolR AHA_2974 3347616 - 3347801 + | inner membrane protein YgaP TERM 3889 3347865 - 3347842 - f 95 -18.2 -2.74019 | opp_overlap 3347842, overlap 3347832 CAGAAGGTGGAACGA GGGCGGTGAG GGTG CTCACCGCCC TTTCATCGTCCTGGC TERM 3890 3347842 - 3347865 + F 100 -18.2 -3.80573 | opp_overlap 3347842 3347832 CAGAAGGTGGAACGA GGGCGGTGAG GGTG CTCACCGCCC TTTCATCGTCCTGGC AHA_2975 3348219 - 3348593 + | hypothetical protein TERM 3891 3348613 - 3348633 + F 100 -18.3 -3.70076 | GCACGACTGATATCC GGGGCCAGC CAT GCTGGCCCC TTTCAATCCGTTTCA TERM 3892 3348844 - 3348862 + G 70 -11.7 -3.21099 | TCTGCTCGACACCCT GGCCAGC CTGCT GCTGGCC TTCGTGCTGGGCAGC AHA_2976 3348797 - 3349525 + | Mg2+ transporter TERM 3893 3349583 - 3349548 - T 100 -19.8 -4.18018 | opp_overlap 3349549 3349555, overlap 3349549 3349555 CTCCGCCATTGAAAA CGCAAAAGCCCCGCCA CTGC CGGCGGGGCTTTTGCT TTTCAGGATGCGGGG TERM 3894 3349582 - 3349549 - T 100 -23.3 -3.10597 | opp_overlap 3349549 3349555, overlap 3349548 3349555 TCCGCCATTGAAAAC GCAAAAGCCCCGCCA CTGC CGGCGGGGCTTTTGC TTTTCAGGATGCGGG TERM 3895 3349549 - 3349582 + T 100 -22.6 -4.11216 | opp_overlap 3349549 3349548 3349555, overlap 3349555 TCCGCCATTGAAAAC GCAAAAGCCCCGCC ACTGCC GGCGGGGCTTTTGC TTTTCAGGATGCGGG TERM 3896 3349576 - 3349555 - T 100 -15.1 -4.43272 | opp_overlap 3349549 3349555, overlap 3349549 3349548 ATTGAAAACGCAAAA GCCCCGCCA CTGC CGGCGGGGC TTTTGCTTTTCAGGA TERM 3897 3349555 - 3349576 + T 100 -14.4 -4.67038 | opp_overlap 3349555 3349549 3349548, overlap 3349549 ATTGAAAACGCAAAA GCCCCGCC ACTGCC GGCGGGGC TTTTGCTTTTCAGGA AHA_2977 3350627 - 3349602 - | fructose repressor AHA_2978 3352070 - 3350655 - | sucrose-6-phosphate hydrolase AHA_2979 3353434 - 3352070 - | pts system, sucrose-specific IIBC component TERM 3898 3352445 - 3352404 - G 70 -11.6 -3.1875 | gap 1 TAGACCGCAAGGCAA GCT-CCCCCCTGAGCCACG TTGGC CATGGCCCAGATGGGCAGC AGGAAGTTGACGCCG TERM 3899 3353528 - 3353487 - R 85 -15.9 -2.68434 | gap 1, opp_overlap 3353487, overlap 3353484 TGTCACATGAGAGTA GGGGCTGTCGAGCCG-GGCT TCT AGCCGCGGATCAACAGCCGC TTGTGCCTGATCGCA TERM 3900 3353487 - 3353528 + r 88 -13.7 -3.37796 | gap 1, opp_overlap 3353487 3353484 TGTCACATGAGAGTA GGGGCTGTCGAGCCG-GGCT TCT AGCCGCGGATCAACAGCCGC TTGTGCCTGATCGCA AHA_2980 3354474 - 3353518 - | aminoimidazole riboside kinase AHA_2981 3356080 - 3354590 - | sucrose porin TERM 3901 3356302 - 3356322 + r 100 -14 -4.1399 | opp_overlap 3356302 ACAGGGGCAAAAAAA GAGCCGGC ACAGG GCCGGCTC TTTATATCTGGGTCG TERM 3902 3356322 - 3356302 - R 100 -14 -5.42862 | opp_overlap 3356302 ACAGGGGCAAAAAAA GAGCCGGC ACAGG GCCGGCTC TTTATATCTGGGTCG dnaJ 3357486 - 3356344 - | chaperone protein DnaJ TERM 3903 3356417 - 3356458 + g 71 -10.7 -3.52906 | gap 1, overlap 3356416 GGCTTGTGGGTCTTG GCGGCGGCGCC-GCTGAAGG ACT CGTCCAGCTGGCGCAGCAGC TCTTTCTGGGACTCG TERM 3904 3356823 - 3356849 + g 71 -5.1 -4.46212 | CGGTGTCGACGCCAG CCGGGATCTTG ACCGA CAGGGTCTTGG TTTTCTGGTAGCGAC TERM 3905 3357518 - 3357547 + r 72 -12.1 -2.60392 | overlap 3357517 3357521 TATCAGCAGTTACGC AGACGGGCGTTGG TCAC CCAACGCCCGTAA ATTCATTGACGAATC TERM 3906 3357521 - 3357544 + r 95 -18.2 -2.60244 | overlap 3357518 3357517 CAGCAGTTACGCAGA CGGGCGTTGG TCAC CCAACGCCCG TAAATTCATTGACGA TERM 3907 3357696 - 3357740 + r 81 -12.2 -3.59279 | gap 1, opp_overlap 3357696, overlap 3357692 3357697 CAGACCGTGAACAGA TTCTGAGCC-GATGGGCGAAG CCTG CTTCGCCCATCTGGGTCGGGC TTACTTCTTGTCGTC TERM 3908 3357697 - 3357739 + r 86 -15.7 -2.74845 | gap 1, opp_overlap 3357696, overlap 3357696 3357692 AGACCGTGAACAGAT TCTGAGCC-GATGGGCGAAG CCTG CTTCGCCCATCTGGGTCGGG CTTACTTCTTGTCGT dnaK 3359669 - 3357741 - | chaperone protein DnaK TERM 3909 3357894 - 3357908 + g 74 -10 -3.76952 | overlap 3357884 CTTCTGGGACGCTTC CAGCAG TGC CTGCTG TTTGGCTTCGATGGC TERM 3910 3359331 - 3359341 + g 72 -2.4 -4.75309 | overlap 3359312 3359311 TTCGGCAGAGATCTG CGGC GGT GCCA TTTTCTTGCCTTTGA TERM 3911 3359701 - 3359715 + r 74 -11.4 -3.21912 | opp_overlap 3359700 3359699 TACTTTGAATAAACT GGCGAG GGG CTCGCC TTAATGCGTTAACGG TERM 3912 3359887 - 3359849 - R 77 -3.9 -5.00616 | gap 2, overlap 3359882 CCCGCCCTGAAAAAA CCTGCCTTCATTCATTGCC ATT GGCAG-G-ATGAAGACCGG CTATCCGTGCCCCCG TERM 3913 3359954 - 3359937 - R 100 -14.1 -5.06816 | ACTTGCCAATAAAAA GCCCGCC GAGC GGCGGGC TCAGCACAGCGATGG grpE 3360548 - 3359973 - | co-chaperone GrpE TERM 3914 3360332 - 3360354 + g 79 -9 -4.2349 | GGGCCTTCTCCACGT CCTGGGCCGC ACG GCGACGCAGG TTTTCCATCTCGGCG TERM 3915 3361099 - 3361113 + G 83 -9.2 -4.38154 | GGTGATCGGGGTGAA CCGGGG CAA CCTCGG TTTTCTCACCGATCT AHA_2985 3360638 - 3361702 + | inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) TERM 3916 3361774 - 3361761 - f 70 -6.7 -4.1899 | overlap 3361764 TTACTGTATGGAAAA CCAGT ATAT ACTGG ATACATACACAGTAA recN 3361814 - 3363478 + | recombination and repair protein TERM 3917 3363979 - 3363994 + F 71 -6 -4.24002 | opp_overlap 3363973 3363978 3363976, overlap 3363981 AGAGTGAAACCAGAG CCGGGG CCAG CCCCTG TTTTCCCATTTGCCC AHA_2987 3364060 - 3364953 + | manganese-dependent inorganic pyrophosphatase TERM 3918 3364956 - 3364993 + F 79 -12.5 -2.93623 | overlap 3364952 CGAGCAGATCTGACC CCAGGCGGCGGGCCGGC CTCT GCCGGCTTGCCGCCCAC TCCTCTTTTCAGCCC AHA_2988 3365314 - 3365754 + | hypothetical protein TERM 3919 3365761 - 3365787 + F 100 -19.5 -3.03243 | overlap 3365746 GTCGGTTGATGACCG GGGTGCCCACC CGCGA GGTGGGCACCC TGTTGCCAGCTCCCT AHA_2989 3365969 - 3367132 + | macrolide-specific efflux protein MacA TERM 3920 3367843 - 3367785 - g 88 -16.5 -3.36991 | overlap 3367786 CATCACCCTGAAAGA TGGCCGGGTGCAGGAGGACAGCGGCCG CAAGC CGGCGGCCGTCCCCGTGACCCCGACCG CCGCCCCTGCCGGCA TERM 3921 3367842 - 3367786 - g 90 -20 -2.61873 | overlap 3367785 ATCACCCTGAAAGAT GGCCGGGTGCAGGAGGACAGCGGCCG CAAGC CGGCGGCCGTCCCCGTGACCCCGACC GCCGCCCCTGCCGGC AHA_2990 3367129 - 3369072 + | macrolide-specific ABC-type efflux carrier TERM 3922 3369742 - 3369729 - g 75 -3.7 -4.7497 | overlap 3369730 3369740 GCCAGCCAGCAAAAA GCCGG CAAG CAGGC GGAGCTCAGCTCGCT AHA_2991 3369069 - 3370442 + | outer membrane efflux protein TERM 3923 3370448 - 3370488 + F 83 -14.1 -2.73799 | overlap 3370445 3370444 TCGCAGCTGACCCGC CTTGTCTCATGCCCTCG CACCGCT CGAGGGCATGAGACATC TCCCTTATTTCTCCC AHA_2992 3370614 - 3371420 + | vibriobactin utilization protein ViuB TERM 3924 3371413 - 3371429 + F 75 -6.5 -4.46926 | overlap 3371414 GTCACGACGTGATGG ACAGCTG AAT CAGCTGA TTTTGTCCTGAAATA TERM 3925 3371476 - 3371445 - f 75 -11.6 -3.34398 | opp_overlap 3371449, overlap 3371443 TTTTGTCCTGAAATA TCAAGCTCATGGTC TACC GGCCATGGGCTTGA TTGCCATTGGTGCAA TERM 3926 3371449 - 3371472 + F 75 -11 -3.37879 | opp_overlap 3371445 3371443 GTCCTGAAATATCAA GCTCATGGTC TACC GGCCATGGGC TTGATTGCCATTGGT AHA_2993 3371634 - 3372788 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 3927 3372803 - 3372827 + T 100 -14.4 -4.18908 | opp_overlap 3372806, overlap 3372806 AACGAGCATCGGCAA TAAGGCTCCC ATAAC GGGAGCCTTA TTATTTTGCCGATAT TERM 3928 3372824 - 3372806 - T 83 -12.4 -3.63991 | opp_overlap 3372803 3372806 GAGCATCGGCAATAA GGCTCCCA TAA CGGGAGCC TTATTATTTTGCCGA TERM 3929 3372806 - 3372824 + T 91 -11.7 -4.20868 | opp_overlap 3372806, overlap 3372803 GAGCATCGGCAATAA GGCTCCC ATAAC GGGAGCC TTATTATTTTGCCGA TERM 3930 3373326 - 3373350 + T 71 -10.7 -3.19463 | opp_overlap 3373326 3373329, overlap 3373329 GGTGAGCACAAATAA TAATGCCGCCT CAT GGGCGGCATCA TTCATGACTGATCCC TERM 3931 3373350 - 3373326 - T 91 -12.2 -4.11183 | opp_overlap 3373326 3373329, overlap 3373329 GGTGAGCACAAATAA TAATGCCGCC TCATG GGCGGCATCA TTCATGACTGATCCC TERM 3932 3373329 - 3373347 + T 72 -12.4 -2.79276 | opp_overlap 3373326 3373329, overlap 3373326 GAGCACAAATAATAA TGCCGCCT CAT GGGCGGCA TCATTCATGACTGAT TERM 3933 3373347 - 3373329 - T 91 -11.7 -4.17309 | opp_overlap 3373329 3373326, overlap 3373326 GAGCACAAATAATAA TGCCGCC TCATG GGCGGCA TCATTCATGACTGAT AHA_2994 3373781 - 3373371 - | DNA-binding protein StpA AHA_2995 3374656 - 3374198 - | acetyltransferase TERM 3934 3374587 - 3374573 - G 76 -10 -3.85698 | overlap 3374550 CCGCCCTTTGAGAAA CAGCTG CGC CAGCTG GGGAATATCCGTCTC TERM 3935 3374714 - 3374741 + H 79 -11.4 -3.73224 | gap 1, overlap 3374717 ATAGTCTCTCGGCGA TGG-CAGGGGTGT GAC ACACCTCTGTCCA TTTCATAAGCCATGG TERM 3936 3374717 - 3374737 + H 72 -11.9 -2.67803 | overlap 3374714 GTCTCTCGGCGATGG CAGGGGTGT GAC ACACCTCTG TCCATTTCATAAGCC TERM 3937 3375102 - 3375087 - g 83 -4.6 -5.00616 | opp_overlap 3375087 3375087, overlap 3375089 TCCGCCTGCAAAAAA CCCAGG TCAG CCTGCG GTTCGTTCCGGAAGG AHA_2996 3374807 - 3375307 + | hypothetical protein TERM 3938 3375350 - 3375321 - T 100 -20.9 -4.06148 | opp_overlap 3375321 3375324 3375327, overlap 3375324 3375327 AAGAGCCCATATAAA GAAGAACACCGCC AACT GGCGGTGTTCTTC TTTATGCAAGGTTGG TERM 3939 3375321 - 3375350 + T 100 -20.9 -3.87869 | opp_overlap 3375321 3375324 3375327, overlap 3375324 3375327 AAGAGCCCATATAAA GAAGAACACCGCC AACT GGCGGTGTTCTTC TTTATGCAAGGTTGG TERM 3940 3375324 - 3375347 + T 100 -16.8 -4.06687 | opp_overlap 3375321 3375324 3375327, overlap 3375321 3375327 AGCCCATATAAAGAA GAACACCGCC AACT GGCGGTGTTC TTCTTTATGCAAGGT TERM 3941 3375347 - 3375324 - T 100 -16.8 -4.15029 | opp_overlap 3375324 3375321 3375327, overlap 3375321 3375327 AGCCCATATAAAGAA GAACACCGCC AACT GGCGGTGTTC TTCTTTATGCAAGGT TERM 3942 3375327 - 3375344 + T 95 -12.7 -4.15703 | opp_overlap 3375324 3375321 3375327, overlap 3375324 3375321 CCATATAAAGAAGAA CACCGCC AACT GGCGGTG TTCTTCTTTATGCAA TERM 3943 3375344 - 3375327 - T 95 -12.7 -4.18983 | opp_overlap 3375327 3375324 3375321, overlap 3375324 3375321 CCATATAAAGAAGAA CACCGCC AACT GGCGGTG TTCTTCTTTATGCAA AHA_2997 3375718 - 3375377 - | inner membrane protein YhaI AHA_2998 3376442 - 3377380 + | transcriptional regulatory protein, C terminal TERM 3944 3377900 - 3377931 + T 90 -17.4 -2.63715 | opp_overlap 3377901 3377904 3377907, overlap 3377904 3377907 CAACTTAGCCGCAAA ACAACAAGGCCACC CAGG GGTGGCCTTGTTGC TACTATGGACTGCCT TERM 3945 3377930 - 3377901 - T 100 -20.9 -4.1196 | opp_overlap 3377900 3377904 3377907, overlap 3377904 3377907 AACTTAGCCGCAAAA CAACAAGGCCACC CAGG GGTGGCCTTGTTG CTACTATGGACTGCC TERM 3946 3377927 - 3377904 - T 100 -16.8 -4.18506 | opp_overlap 3377900 3377904 3377907, overlap 3377901 3377907 TTAGCCGCAAAACAA CAAGGCCACC CAGG GGTGGCCTTG TTGCTACTATGGACT TERM 3947 3377904 - 3377927 + T 100 -16.8 -3.24925 | opp_overlap 3377904 3377901 3377907, overlap 3377900 3377907 TTAGCCGCAAAACAA CAAGGCCACC CAGG GGTGGCCTTG TTGCTACTATGGACT TERM 3948 3377924 - 3377907 - T 95 -12.7 -4.20868 | opp_overlap 3377907 3377904 3377900, overlap 3377904 3377901 GCCGCAAAACAACAA GGCCACC CAGG GGTGGCC TTGTTGCTACTATGG TERM 3949 3377907 - 3377924 + T 86 -12.7 -3.76482 | opp_overlap 3377904 3377901 3377907, overlap 3377904 3377900 GCCGCAAAACAACAA GGCCACC CAGG GGTGGCC TTGTTGCTACTATGG AHA_2999 3379229 - 3377952 - | FAD dependent oxidoreductase TERM 3950 3379277 - 3379263 - R 71 -10 -3.53012 | overlap 3379266 GGTTCTTTTCCCAAA CGAGAC GAT GTCTCG GCACTAGAAGTTGGC AHA_3000 3379892 - 3379281 - | DNA-binding transcriptional repressor PuuR AHA_3001 3380203 - 3381666 + | succinate-semialdehyde dehydrogenase (NADP+) TERM 3951 3381802 - 3381788 - f 79 -12.8 -2.93382 | CGCCACATTGAGACA GGGGCC CCC GGCCCC TCAGGGAGGAAAGAT gabT 3381816 - 3383105 + | 4-aminobutyrate transaminase TERM 3952 3383186 - 3383142 - f 100 -9.4 -5.44721 | gap 1, overlap 3383144 ATCAGTGCAAAAAAA TGCGTTTTTGCCCCCTTGATA TGCT TGTCAAGGGGGCAAC-ACGAA TGCACAATGCGCCGC TERM 3953 3383184 - 3383144 - f 75 -12 -2.90726 | gap 1, overlap 3383142 CAGTGCAAAAAAATG CGTTTTTGCCCCCTTGATA TGCT TGTCAAGGGGGCAAC-ACG AATGCACAATGCGCC TERM 3954 3383508 - 3383494 - g 100 -5.6 -5.40072 | TCGGCCTGAAAAAAA GCCTCA AAC TGTGGC ACGTGGTCATCATGG AHA_3003 3383463 - 3384806 + | amino acid permease TERM 3955 3384825 - 3384845 + F 100 -15.4 -5.76949 | TTCTTTGCGTTCACA GCGCCCGC CCTCT GCGGGCGC TTTTTTTTACCCCTG TERM 3956 3384971 - 3384984 + F 86 -3.7 -5.35354 | opp_overlap 3384970 3384971 3384972, overlap 3384972 CCAGGTCAACAAAAT CCCCC GACA GGGGC TTTTTTGCTTGTGTC TERM 3957 3385031 - 3385066 + F 86 -6.9 -5.00616 | overlap 3385035 CACAATACGCCGCCC CTGAGAGCCGATGTT TTTTGC AGCATCGGTTCTTCG TTTTTTAGGGGAAAA TERM 3958 3385035 - 3385062 + F 74 -8.5 -3.93166 | overlap 3385031 ATACGCCGCCCCTGA GAGCCGATGTT TTTTGC AGCATCGGTTC TTCGTTTTTTAGGGG AHA_3004 3385313 - 3386656 + | amino acid permease TERM 3959 3386711 - 3386679 - T 93 -12.8 -3.95787 | gap 1, opp_overlap 3386683 3386686, overlap 3386680 3386683 GAGCAGACGCACAAA TGC-AGAAGGGGAGC CATG GCTCCCCTTCTTGCT GTGCACGCCGCGCTC TERM 3960 3386710 - 3386680 - T 93 -16.3 -2.9699 | gap 1, opp_overlap 3386683 3386686, overlap 3386679 3386683 AGCAGACGCACAAAT GC-AGAAGGGGAGC CATG GCTCCCCTTCTTGC TGTGCACGCCGCGCT TERM 3961 3386706 - 3386683 - T 90 -16.8 -2.71593 | opp_overlap 3386683 3386686, overlap 3386680 3386679 AGACGCACAAATGCA GAAGGGGAGC CATG GCTCCCCTTC TTGCTGTGCACGCCG TERM 3962 3386683 - 3386706 + T 100 -16.8 -3.25823 | opp_overlap 3386683 3386680 3386679, overlap 3386686 AGACGCACAAATGCA GAAGGGGAGC CATG GCTCCCCTTC TTGCTGTGCACGCCG TERM 3963 3386686 - 3386703 + T 90 -12.7 -3.7732 | opp_overlap 3386683 3386680 3386679, overlap 3386683 CGCACAAATGCAGAA GGGGAGC CATG GCTCCCC TTCTTGCTGTGCACG AHA_3005 3387264 - 3386755 - | hypothetical protein AHA_3006 3387384 - 3388538 + | sodium dependent phosphate pump AHA_3007 3388706 - 3389176 + | fkbp-type peptidyl-prolyl cis-trans isomerase fkpa TERM 3964 3389357 - 3389376 + F 80 -12.1 -3.4252 | CTCCGCCTTTCTCAG GGCCGGC CATTGC GCCGGCC TTGTCATGAGTAAAA AHA_3008 3389563 - 3390330 + | extradiol ring-cleavage dioxygenase, class III enzyme, subunit B TERM 3965 3390358 - 3390377 + F 100 -10.7 -4.82901 | opp_overlap 3390358 CCAGACAGCGCAAGA TGGCGGG TCGCTT CCCGCCA TTTTTATGGCGCCGG TERM 3966 3391165 - 3391189 + G 71 -8.4 -3.85165 | opp_overlap 3391147 3391146 3391144, overlap 3391181 GCAGCGCAGCCAGGC GCAGCCCGCC ATCGC GGCGGACGGC TTTCGCTTTGCGGTC AHA_3009 3390494 - 3393763 + | virulence sensor protein BvgS TERM 3967 3394130 - 3394108 - T 70 -6.9 -4.08064 | AACTGGGTCGCAAAA CCGGCCATC ACGAA GTTGGCCAG GAAGCTGATGGCAGT deoD-1 3394921 - 3394220 - | purine nucleoside phosphorylase TERM 3968 3395185 - 3395158 - R 100 -16.2 -4.56597 | overlap 3395140 3395141 3395159 3395160 CCCTGCGCCCAAAAA GCGCGGGGGGCC TGCT GGCCCCCCGCAA ACACACCAAATGAGA TERM 3969 3395184 - 3395159 - R 100 -19.7 -3.33744 | overlap 3395140 3395141 3395158 3395160 CCTGCGCCCAAAAAG CGCGGGGGGCC TGCT GGCCCCCCGCA AACACACCAAATGAG TERM 3970 3395183 - 3395160 - R 100 -21 -2.60032 | overlap 3395140 3395141 3395159 3395158 CTGCGCCCAAAAAGC GCGGGGGGCC TGCT GGCCCCCCGC AAACACACCAAATGA AHA_3011 3395618 - 3395208 - | hypothetical protein TERM 3971 3395455 - 3395471 + g 100 -10.1 -5.08824 | overlap 3395456 CCGACAAAGCTGGTC TTGGCGG CGC CCGCCAG TTTTTTGGCTGCGGC TERM 3972 3395456 - 3395470 + g 73 -11.4 -3.64812 | overlap 3395455 CGACAAAGCTGGTCT TGGCGG CGC CCGCCA GTTTTTTGGCTGCGG TERM 3973 3396260 - 3396248 - g 86 -7.7 -4.76963 | TCAGACAATATAAAA CTCCT TGA AGGAG CCATCATTTCATTTA AHA_3012 3396182 - 3397264 + | region found in RelA / SpoT proteins TERM 3974 3397290 - 3397320 + T 100 -14.1 -4.42653 | overlap 3397292 TTATGACGCCATCTT TCTGAGCCAGCCA TTAAT TGGCTGGCTCACA TTTTATCCCTCCCCT TERM 3975 3397292 - 3397318 + T 89 -16.7 -2.54745 | overlap 3397290 ATGACGCCATCTTTC TGAGCCAGCCA TTAAT TGGCTGGCTCA CATTTTATCCCTCCC TERM 3976 3397553 - 3397539 - T 70 -2.8 -4.77157 | overlap 3397540 3397550 TCAAGCCATCAAAAA TCTAGA AAA TCTAGG ACACCCACCTTTCTG TERM 3977 3397565 - 3397596 + T 100 -16.8 -3.55071 | gap 1 TAGGACACCCACCTT TC-TGAGCCAGCCAT TAC ATGGCTGGCTCACGA TTTAGCCCCCTATCC AHA_3013 3399177 - 3397606 - | ABC transporter ATPase TERM 3978 3398241 - 3398214 - G 71 -11.2 -3.41602 | GCCATTGCATGACAA GCGGCTGCACTG CCGC CAGTGCGGCTGC CGCTTCGGCGCACGC TERM 3979 3398418 - 3398434 + g 70 -7.9 -4.08216 | overlap 3398419 CGCGTACCTTCTGCA CGCTGCG CGC CGCAGCC TTTTCACGGCGCTCC AHA_3014 3399584 - 3400486 + | hypothetical protein TERM 3980 3400504 - 3400535 + T 89 -13.2 -3.48276 | opp_overlap 3400512, overlap 3400506 3400512 AGCACGCTATCGATC CATAAAAAGAGCCC CGCA GGGCTCTTTTTATA TTGTCTCCCCCACAA TERM 3981 3400506 - 3400533 + T 100 -15.8 -3.31726 | opp_overlap 3400512, overlap 3400504 3400512 CACGCTATCGATCCA TAAAAAGAGCCC CGCA GGGCTCTTTTTA TATTGTCTCCCCCAC TERM 3982 3400512 - 3400527 + T 100 -10.4 -5.1764 | opp_overlap 3400512, overlap 3400506 3400504 ATCGATCCATAAAAA GAGCCC CGCA GGGCTC TTTTTATATTGTCTC TERM 3983 3400527 - 3400512 - T 100 -10.4 -4.88067 | opp_overlap 3400506 3400504 3400512 ATCGATCCATAAAAA GAGCCC CGCA GGGCTC TTTTTATATTGTCTC TERM 3984 3400887 - 3400875 - T 73 -10.5 -3.35813 | overlap 3400860 CCCGATGGCAATCAA GCGGG GAT CCCGC TGGCCGGAGCTGTGC TERM 3985 3401012 - 3401030 + T 73 -8.8 -3.78775 | opp_overlap 3401012, overlap 3401019 GCTTCGCTCTCAACA CTGCCAAG GCG CTTGGCCG TTTCCTGCTGAGCGG TERM 3986 3401215 - 3401192 - T 100 -12.4 -5.24129 | gap 1, opp_overlap 3401192 GGGCTGGATAAAAAA GCCCGG-CGCC ATT AGCGGCCGGGC TTTTTCACGTTCGGG TERM 3987 3401192 - 3401215 + T 100 -11.7 -4.66833 | gap 1, opp_overlap 3401192 GGGCTGGATAAAAAA GCCCGG-CGC CATTA GCGGCCGGGC TTTTTCACGTTCGGG AHA_3015 3403058 - 3401253 - | exoenzymes regulatory protein AepA TERM 3988 3403429 - 3403462 + r 76 -10.4 -3.68738 | gap 1, opp_overlap 3403431, overlap 3403425 3403431 CTGTGCCAGATAAAA AATCCCCCGCTCTTT ATAAA AAAG-GCGGGGGATG TTCATTTCTTCACGG TERM 3989 3403460 - 3403431 - R 100 -13 -5.36441 | gap 1, opp_overlap 3403431 3403429 3403425 GTGCCAGATAAAAAA TCCCCCGCTCTTT ATAAA AAAG-GCGGGGGA TGTTCATTTCTTCAC TERM 3990 3403431 - 3403460 + r 84 -13 -3.41962 | gap 1, opp_overlap 3403431, overlap 3403429 3403425 GTGCCAGATAAAAAA TCCCCCGCTCTTT ATAAA AAAG-GCGGGGGA TGTTCATTTCTTCAC thrC 3404756 - 3403482 - | threonine synthase thrB 3405733 - 3404753 - | homoserine kinase AHA_3018 3408195 - 3405736 - | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 3991 3408293 - 3408256 - R 87 -13.7 -3.19038 | gap 1, opp_overlap 3408256 3408262, overlap 3408262 CTGAAAATCATCCAA CA-AAAAGGCCCGTAC TGGGTGG GTACGGGCCTTTTCTG ATTTCTGTGCTTGTT TERM 3992 3408256 - 3408293 + r 91 -14.4 -3.09274 | gap 1, opp_overlap 3408256 3408262, overlap 3408262 CTGAAAATCATCCAA CA-AAAAGGCCCGTACT GGGTG GGTACGGGCCTTTTCTG ATTTCTGTGCTTGTT TERM 3993 3408262 - 3408286 + r 100 -13.6 -4.6575 | opp_overlap 3408256 3408262, overlap 3408256 ATCATCCAACAAAAA GGCCCGTACT GGGTG GGTACGGGCC TTTTCTGATTTCTGT TERM 3994 3408286 - 3408262 - R 100 -12.9 -5.11063 | opp_overlap 3408262 3408256, overlap 3408256 ATCATCCAACAAAAA GGCCCGTAC TGGGTGG GTACGGGCC TTTTCTGATTTCTGT AHA_3019 3408402 - 3408319 - | thr operon leader peptide AHA_3020 3409148 - 3408456 - | putative RNA methyltransferase aceK 3409344 - 3411071 + | bifunctional isocitrate dehydrogenase kinase/phosphatase protein TERM 3995 3411141 - 3411108 - T 89 -13.9 -3.63266 | opp_overlap 3411116, overlap 3411110 3411116 AAAAGGGAGTGCAAA TAGCAAAAGGGACGC CGTG GCGTCCCTTTTGCGT TGGGCCGTCAGCTCA TERM 3996 3411139 - 3411110 - T 100 -20.9 -3.3879 | opp_overlap 3411116, overlap 3411108 3411116 AAGGGAGTGCAAATA GCAAAAGGGACGC CGTG GCGTCCCTTTTGC GTTGGGCCGTCAGCT TERM 3997 3411116 - 3411133 + T 100 -12.7 -4.27316 | opp_overlap 3411116 3411110 3411108 GTGCAAATAGCAAAA GGGACGC CGTG GCGTCCC TTTTGCGTTGGGCCG TERM 3998 3411133 - 3411116 - T 100 -12.7 -4.49756 | opp_overlap 3411116, overlap 3411110 3411108 GTGCAAATAGCAAAA GGGACGC CGTG GCGTCCC TTTTGCGTTGGGCCG AHA_3022 3411534 - 3411187 - | hypothetical protein TERM 3999 3412068 - 3412028 - g 71 -13.9 -2.57881 | overlap 3412017 3412027 CAATCCGGCTACAAC CTGAGCTCGGGGGTGCGCT ATC AGCTCTCCCCCATGCTCAA CATCGGCAGCCAGCT AHA_3023 3411758 - 3412234 + | hypothetical protein rraA-1 3412719 - 3412240 - | ribonuclease activity regulator protein RraA AHA_3025 3413178 - 3412762 - | hypothetical protein TERM 4000 3413052 - 3413005 - G 71 -13.6 -2.50816 | opp_overlap 3413016, overlap 3413004 CTGCCAGCGAGGAAC CGCCGCAATGGCCCGCCA-CAG GGCCCG CTGATGGCGGGT-ATTGCGACG CATTCCCAGCTGGCG TERM 4001 3413227 - 3413214 - H 77 -8.1 -4.10657 | opp_overlap 3413213 TTATAGGGGCGAAAA TGGGG GCAA CCCCA AGTATCATGCTGTGA arcA-1 3413555 - 3414274 + | two-component response regulator TERM 4002 3414291 - 3414319 + F 100 -16.1 -3.87869 | opp_overlap 3414298, overlap 3414298 CCTCCCTCCCCCGAG TTGAAAAGGCGCC GAT GGCGCCTTTTCCA TTTCTGCGCCATTCA TERM 4003 3414298 - 3414312 + F 100 -12.8 -4.39571 | opp_overlap 3414298, overlap 3414291 CCCCCGAGTTGAAAA GGCGCC GAT GGCGCC TTTTCCATTTCTGCG TERM 4004 3414312 - 3414298 - f 95 -12.8 -4.13767 | opp_overlap 3414291 3414298 CCCCCGAGTTGAAAA GGCGCC GAT GGCGCC TTTTCCATTTCTGCG TERM 4005 3414414 - 3414376 - f 100 -16.3 -3.7035 | gap 1, opp_overlap 3414385, overlap 3414385 ACATCAAAAAACAGA CA-ACAAAAAGCCCACTC GCAG GAGTGGGCTTTTTGCATG AAGGCTGGAGCGGGC TERM 4006 3414385 - 3414404 + F 100 -13.6 -4.65895 | opp_overlap 3414376 3414385 AACAGACAACAAAAA GCCCACTC GCAG GAGTGGGC TTTTTGCATGAAGGC TERM 4007 3414404 - 3414385 - f 100 -13.6 -5.28561 | opp_overlap 3414385, overlap 3414376 AACAGACAACAAAAA GCCCACTC GCAG GAGTGGGC TTTTTGCATGAAGGC TERM 4008 3414555 - 3414541 - f 71 -11.4 -2.95491 | overlap 3414543 AAACCCCACGACAGA CAGCCG TTT CGGCTG AGGTGACAACGGCAT AHA_3029 3414864 - 3416633 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 4009 3417747 - 3417730 - g 78 -6.9 -4.57073 | overlap 3417731 CAGGCCGGCGAAAAA CTGGCGC TGCT GGGCCAG ACCGGCTGCGGCAAA AHA_3030 3416626 - 3418371 + | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 4010 3418411 - 3418379 - f 100 -21.4 -3.21099 | opp_overlap 3418384 3418386, overlap 3418380 CGGCCTGATGAGCAA CGAGAGAGGGGCGC CCGGT GCGCCCCTCTCTCA TGACACCAGGCCAGT TERM 4011 3418410 - 3418380 - f 100 -22.7 -2.52516 | opp_overlap 3418384 3418386, overlap 3418379 GGCCTGATGAGCAAC GAGAGAGGGGCGC CCGGT GCGCCCCTCTCTC ATGACACCAGGCCAG TERM 4012 3418384 - 3418406 + F 90 -16.3 -2.78384 | opp_overlap 3418380 3418379, overlap 3418386 TGATGAGCAACGAGA GAGGGGCGC CCGGT GCGCCCCTC TCTCATGACACCAGG TERM 4013 3418386 - 3418404 + F 79 -13.1 -2.94099 | opp_overlap 3418380 3418379, overlap 3418384 ATGAGCAACGAGAGA GGGGCGC CCGGT GCGCCCC TCTCTCATGACACCA TERM 4014 3418535 - 3418505 - f 95 -11 -4.61231 | opp_overlap 3418494 3418506, overlap 3418506 CCATACGGCTAAAAA TGGGGCTGGTCGAC ACC GTCGACTGGCCCCT ATAATGGCCCCTTCG TERM 4015 3418534 - 3418506 - f 95 -14.5 -3.36256 | opp_overlap 3418494 3418506, overlap 3418505 CATACGGCTAAAAAT GGGGCTGGTCGAC ACC GTCGACTGGCCCC TATAATGGCCCCTTC TERM 4016 3418506 - 3418534 + F 100 -18.9 -2.79133 | opp_overlap 3418506 3418505, overlap 3418494 CATACGGCTAAAAAT GGGGCTGGTCGAC ACC GTCGACTGGCCCC TATAATGGCCCCTTC AHA_3031 3418625 - 3418996 + | exopolysaccharide synthesis regulator RcsF AHA_3032 3419019 - 3419411 + | hypothetical protein TERM 4017 3419457 - 3419430 - T 88 -11.4 -4.11216 | opp_overlap 3419430 3419435, overlap 3419435 CGCTCACGCCGAAAA GAAAAGGGCATC TCTC GATGCCCTTTTG CTTTGCTGCGGCACT TERM 4018 3419452 - 3419435 - T 100 -11.3 -5.08255 | opp_overlap 3419430 3419435, overlap 3419430 ACGCCGAAAAGAAAA GGGCATC TCTC GATGCCC TTTTGCTTTGCTGCG TERM 4019 3419435 - 3419452 + T 95 -11.3 -4.58773 | opp_overlap 3419435 3419430, overlap 3419430 ACGCCGAAAAGAAAA GGGCATC TCTC GATGCCC TTTTGCTTTGCTGCG AHA_3033 3420462 - 3419482 - | isoflavone reductase TERM 4020 3420446 - 3420434 - G 77 -2.6 -5.00616 | opp_overlap 3420440 TGGCGGCCCAAAAAA CCGG TGCCG CCGA TGATCAGCAGTTTCA AHA_3034 3420710 - 3421417 + | hypothetical protein TERM 4021 3421427 - 3421456 + T 80 -12.3 -3.33815 | opp_overlap 3421434, overlap 3421434 CAGTGAGCCAGCCAT AAAAAAACCACCC GTTC GGGTGGTTTTTTG TTGCTTGCCGCGGCT TERM 4022 3421449 - 3421434 - T 100 -10.4 -5.64274 | opp_overlap 3421427 3421434 CCAGCCATAAAAAAA CCACCC GTTC GGGTGG TTTTTTGTTGCTTGC TERM 4023 3421434 - 3421449 + T 100 -10.4 -5.5604 | opp_overlap 3421434, overlap 3421427 CCAGCCATAAAAAAA CCACCC GTTC GGGTGG TTTTTTGTTGCTTGC AHA_3035 3422602 - 3421481 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 4024 3422614 - 3422631 + r 76 -9.8 -3.82205 | TCATCTTTGCTCCTC GCCGGG TTCACT CCCGGC TTGTTGGTCTGTTCA AHA_3036 3423821 - 3422658 - | hypothetical protein AHA_3037 3424667 - 3423825 - | AAA ATPase TERM 4025 3424570 - 3424586 + g 78 -6.6 -4.56775 | CCTGTGCCGGGTTCC CCTTTG ATAAG CAAAGG TTTTTCCAGCACGAT cysK 3424835 - 3425803 + | cysteine synthase A TERM 4026 3425827 - 3425846 + F 100 -15 -4.56367 | opp_overlap 3425827 ATTATTTCAAAACAA CGGCGCTC CCAG GAGCGCCG TTTCTTTATGAGCTA TERM 4027 3425846 - 3425827 - f 100 -15 -4.20148 | opp_overlap 3425827 ATTATTTCAAAACAA CGGCGCTC CCAG GAGCGCCG TTTCTTTATGAGCTA TERM 4028 3426008 - 3426020 + F 77 -4.9 -4.93365 | opp_overlap 3426008 CTAGGTATCACAAAG TAACA AAG TGTTA TTTTTCGTTATAAAA ptsH 3426246 - 3426503 + | phosphocarrier protein PtsH TERM 4029 3426494 - 3426509 + F 84 -9 -4.24342 | TGCCCTGATGGACGA GCTGGA GTAA TCCAGC TTTATTCCTCCCCCA TERM 4030 3426775 - 3426755 - g 86 -6.7 -5.06414 | overlap 3426757 TTCGGTGAAGAAAAA GAGGCCATC TTC GAAGGCCAC ATCATGCTGCTCGAA TERM 4031 3426773 - 3426757 - g 72 -7.9 -4.16307 | overlap 3426755 CGGTGAAGAAAAAGA GGCCATC TTC GAAGGCC ACATCATGCTGCTCG ptsI-2 3426548 - 3428275 + | phosphoenolpyruvate-protein phosphotransferase crr 3428319 - 3428828 + | glucose-specific PTS system component TERM 4032 3428841 - 3428829 - T 71 -6.2 -4.24413 | CGCATCAAGAAATAA GGCC GCATG GGCC GAGCGCCCGTCGCCG TERM 4033 3428852 - 3428898 + T 100 -16.1 -4.11216 | gap 1, opp_overlap 3428867, overlap 3428867 GGGCCGAGCGCCCGT CGCCGCAACAAAAAACCGAAGC CCTG GCTTCGGTTTTTTTATG-GGCG TTTTCCGGCTAGGCC TERM 4034 3428884 - 3428867 - T 100 -11.3 -5.4505 | opp_overlap 3428852 3428867 CGCCGCAACAAAAAA CCGAAGC CCTG GCTTCGG TTTTTTTATGGGCGT TERM 4035 3428867 - 3428884 + T 100 -11.3 -5.61596 | opp_overlap 3428867, overlap 3428852 CGCCGCAACAAAAAA CCGAAGC CCTG GCTTCGG TTTTTTTATGGGCGT AHA_3042 3429965 - 3428907 - | GGDEF domain-containing protein AHA_3043 3430749 - 3429931 - | hypothetical protein AHA_3044 3430969 - 3431514 + | cytochrome b561 TERM 4036 3431539 - 3431569 + T 100 -19.9 -3.19463 | opp_overlap 3431539 3431542 3431545, overlap 3431542 3431545 CGGGTTGCACACCAA CAAGAAGGCCCCT TTGAC AGGGGCCTTCTTG TTCATGGATGGTGAG TERM 4037 3431569 - 3431539 - T 100 -19.9 -3.25823 | opp_overlap 3431539 3431542 3431545, overlap 3431542 3431545 CGGGTTGCACACCAA CAAGAAGGCCCCT TTGAC AGGGGCCTTCTTG TTCATGGATGGTGAG TERM 4038 3431542 - 3431566 + T 100 -15.8 -3.73914 | opp_overlap 3431542 3431539 3431545, overlap 3431539 3431545 GTTGCACACCAACAA GAAGGCCCCT TTGAC AGGGGCCTTC TTGTTCATGGATGGT TERM 4039 3431566 - 3431542 - T 100 -15.8 -3.7732 | opp_overlap 3431539 3431542 3431545, overlap 3431539 3431545 GTTGCACACCAACAA GAAGGCCCCT TTGAC AGGGGCCTTC TTGTTCATGGATGGT TERM 4040 3431545 - 3431563 + T 90 -11.7 -3.99775 | opp_overlap 3431542 3431539 3431545, overlap 3431542 3431539 GCACACCAACAAGAA GGCCCCT TTGAC AGGGGCC TTCTTGTTCATGGAT TERM 4041 3431563 - 3431545 - T 90 -11.7 -4.0156 | opp_overlap 3431545 3431542 3431539, overlap 3431542 3431539 GCACACCAACAAGAA GGCCCCT TTGAC AGGGGCC TTCTTGTTCATGGAT AHA_3045 3435353 - 3431598 - | exonuclease SbcC TERM 4042 3434685 - 3434702 + g 86 -12.7 -4.00038 | CACGTCGCCGAGCCG CTGGCCG ATGG CGGCCAG TTTCTGCTGCTCCTC TERM 4043 3435287 - 3435261 - G 71 -13.6 -2.62613 | opp_overlap 3435280, overlap 3435260 3435258 GGTGATGGCAAACAG GCCGGCGGCCCC CAG GGCACCACCGGC AAAGTCGATGGTGAA AHA_3046 3436662 - 3435436 - | nuclease sbcCD subunit D TERM 4044 3436270 - 3436237 - G 79 -10.9 -3.85698 | gap 1, opp_overlap 3436255 3436257 GCTGCTGCGCAGAAA CGGCACGGCGGCACAC CAG GCG-GCCACCTCGCCG TTTTTGCCTCGCAGC TERM 4045 3436257 - 3436270 + g 74 -5.2 -4.65895 | opp_overlap 3436237, overlap 3436255 CGGCGGCACACCAGG CGGC CACCTC GCCG TTTTTGCCTCGCAGC AHA_3047 3437192 - 3436764 - | acetyltransferase YjaB rdgC 3437373 - 3438284 + | recombination associated protein TERM 4046 3438327 - 3438314 - f 100 -9.5 -5.0538 | opp_overlap 3438314 CCTGATTGCAAAAAA CCGCC TCTG GGCGG TTTTTTTATGGGCGC TERM 4047 3438314 - 3438327 + F 100 -9.5 -5.60993 | opp_overlap 3438314 CCTGATTGCAAAAAA CCGCC TCTG GGCGG TTTTTTTATGGGCGC TERM 4048 3439443 - 3439500 + G 72 -13.4 -2.74144 | gap 3, overlap 3439443 TGCTGGGGGAGCAGG GCCAGCCG-GCCGCCTC-C-GCCGAGGCG ATC CACCTCTACAGCGAGGCGGCGCGGCTCGC CTTTGCCGATCGCAA AHA_3049 3438464 - 3440242 + | gamma-glutamyltranspeptidase TERM 4049 3440280 - 3440295 + F 100 -11.8 -5.55769 | AACCCCACGCAGCGA GCGGCC AGTC GGCCGC TTTTTTGTTCTCCAC AHA_3050 3440629 - 3442272 + | monovalent cation:proton antiporter family protein TERM 4050 3442309 - 3442292 - f 76 -12.7 -2.75712 | opp_overlap 3442292, overlap 3442289 3442294 CCATTCAGTGAACCA GAGGGGC CTTG GCCCCTC TTTTTATGCCTCTTT TERM 4051 3442292 - 3442309 + F 100 -12.7 -4.92363 | opp_overlap 3442292 3442289 3442294 CCATTCAGTGAACCA GAGGGGC CTTG GCCCCTC TTTTTATGCCTCTTT AHA_3051 3442315 - 3443853 + | leucyl aminopeptidase TERM 4052 3443886 - 3443906 + F 100 -16.9 -3.89212 | opp_overlap 3443886 ACGCATCCAAAACAA GAGGGAGGC CAA GCCTCCCTC TTTCGTCTCTGCGTC TERM 4053 3443906 - 3443886 - f 100 -16.9 -4.22214 | opp_overlap 3443886 ACGCATCCAAAACAA GAGGGAGGC CAA GCCTCCCTC TTTCGTCTCTGCGTC TERM 4054 3445138 - 3445125 - g 79 -8.1 -4.28254 | CTCCAAGATCGAAAA CCAGG AAGG CCTGG ACAACTTCGACGAGA pyk-3 3444421 - 3445869 + | pyruvate kinase TERM 4055 3445909 - 3445892 - f 100 -14.1 -4.24123 | opp_overlap 3445892 TGAACAAGCTGAAAA CGGCGCC TGCG GGCGCCG TTTTTTTTATCTGCC TERM 4056 3445892 - 3445909 + F 100 -14.1 -6.02914 | opp_overlap 3445892 TGAACAAGCTGAAAA CGGCGCC TGCG GGCGCCG TTTTTTTTATCTGCC TERM 4057 3446069 - 3446041 - g 76 -8.7 -4.11371 | opp_overlap 3446041 3446038 3446043 CAACACGCTTCAAAA GAGCCTCGGCCAC CCT GTTGCCGCTGCTC TGCTTACTCGTCAGC TERM 4058 3446852 - 3446841 - g 82 -5.8 -4.82901 | overlap 3446846 CCGCTGGTACAAAAA GAGC AGGA GCTC AACCATCAGCTCAGC kefA 3446019 - 3449342 + | potassium efflux system KefA TERM 4059 3449366 - 3449381 + F 100 -11.8 -5.31877 | ACCATGCCACTCGAA GGCCCC GCAA GGGGCC TTTTTTATGGTCGGT TERM 4060 3449399 - 3449414 + F 90 -10.4 -4.36914 | overlap 3449398 TTTTATGGTCGGTGG CCAGCC ATCT GGCTGG TTTTGTGACACGCCG AHA_3054 3449552 - 3450385 + | hypothetical protein TERM 4061 3450599 - 3450619 + G 72 -2.3 -4.68593 | overlap 3450600 GGACGGGCACTGGCT CCATGCCGC CGT GCGGCCCGA TTTTTCGCTCATCAG TERM 4062 3451228 - 3451195 - g 71 -13.9 -2.62184 | gap 1 GCTTTCTCTACAGCA GCGAGC-GGGCCAGCA GCC TGCTGACCCAGTTCGC CATTGCGCCGGATGG AHA_3055 3450450 - 3451457 + | 6-phosphogluconolactonase TERM 4063 3451527 - 3451498 - T 100 -16.5 -4.42386 | opp_overlap 3451500, overlap 3451500 GGCGCACCGACAAAA CAGAGAGGCCACC CTGG GGTGGCCTCTCTT TCATCATCTCAATGC TERM 4064 3451500 - 3451525 + T 100 -19.1 -3.82218 | opp_overlap 3451498 3451500 CGCACCGACAAAACA GAGAGGCCACC CTGG GGTGGCCTCTC TTTCATCATCTCAAT TERM 4065 3451525 - 3451500 - T 100 -19.1 -3.82117 | opp_overlap 3451500, overlap 3451498 CGCACCGACAAAACA GAGAGGCCACC CTGG GGTGGCCTCTC TTTCATCATCTCAAT uraA 3452854 - 3451559 - | uracil permease AHA_3057 3453103 - 3454422 + | intein-containing protein AHA_3058 3454419 - 3454760 + | 17 kDa antigen TERM 4066 3454799 - 3454780 - T 100 -15 -5.4833 | opp_overlap 3454779 3454778 TCAGGTAACAAAAAA GGGGTGGC CATG GCCACCCC CCTTCTATTGCAAGT AHA_3059 3456545 - 3454830 - | malate dehydrogenase TERM 4067 3457343 - 3457310 - g 83 -11.7 -4.07885 | gap 1 CAGCGCGGTGCAAAA CGGCATGCTGGGGCAG CGC CTGCTCCAGCA-GCAG CTCACCGACATCAAG AHA_3060 3456786 - 3457916 + | two-component hybrid sensor and regulator TERM 4068 3457951 - 3457934 - T 100 -14.1 -4.42974 | opp_overlap 3457934 GGCAGACACAACAAA GGGGCGC CGCA GCGCCCC TTCTTCTCTTTCATC TERM 4069 3457934 - 3457951 + T 100 -14.1 -4.05193 | opp_overlap 3457934 GGCAGACACAACAAA GGGGCGC CGCA GCGCCCC TTCTTCTCTTTCATC AHA_3061 3458956 - 3457985 - | formate dehydrogenase, cytochrome b556 subunit TERM 4070 3458804 - 3458834 + g 75 -14.6 -2.71731 | opp_overlap 3458767 CACCCCGTGCTCCGG CGAGCGGGAGGTGG TCA CCCCCTCCTGCCCG TCCTTCACCGCTCGC TERM 4071 3458858 - 3458879 + g 70 -7.9 -4.06182 | gap 1, opp_overlap 3458856 3458870 CGCTCGCCAGTAATC GGC-GCCGGC AAA GCCGACCGCC TCTTTTTCTGCGTCG AHA_3062 3459576 - 3458953 - | formate dehydrogenase iron-sulfur subunit AHA_3063 3462481 - 3459581 - | formate dehydrogenase AHA_3064 3462708 - 3462505 - | Tat pathway signal sequence domain-containing protein AHA_3065 3463398 - 3462778 - | TorD family cytoplasmic chaperone AHA_3066 3465139 - 3463409 - | iron-sulfur cluster-binding protein TERM 4072 3465152 - 3465177 + r 74 -9.7 -3.7282 | gap 1 CACATGCACTCCTGT GCGCGCCA-CCT CGT GGGATGGCGTGC TTGTTGGTCAGCTGG AHA_3067 3465921 - 3465244 - | hypothetical protein TERM 4073 3465595 - 3465614 + gr 74 -7.8 -4.17657 | overlap 3465570 3465611 CCTGTCAGGGAGTGC CGGCTTCT CTGA AGGGGCCG TTTTCGGCTCTGATC AHA_3068 3466429 - 3465839 - | hypothetical protein AHA_3069 3467702 - 3466704 - | type I restriction enzyme r protein n terminus (hsdr_n) AHA_3070 3467969 - 3468826 + | formate dehydrogenase accessory protein AHA_3071 3468922 - 3469782 + | hypothetical protein TERM 4074 3469809 - 3469834 + T 100 -7.5 -5.28176 | opp_overlap 3469809 CTCGCCCGTAAAAAA GCCCGCCAAGA CCAA TATTGACGGGC TTTTTTGTGCCTCAC TERM 4075 3469834 - 3469809 - T 100 -9.7 -5.00616 | opp_overlap 3469809 CTCGCCCGTAAAAAA GCCCGCCAAGA CCAA TATTGACGGGC TTTTTTGTGCCTCAC TERM 4076 3469891 - 3469910 + T 79 -2.7 -5.28176 | TTGAGGGCAATGCGC GCCCTTC AAGTTC GGCGGGC TTTTTTGTGCCTCAC TERM 4077 3469968 - 3469987 + T 79 -2.7 -5.28176 | TTGAGGGCAATGCGC GCCCTTC AAGTTC GGCGGGC TTTTTTGTGACTGGC TERM 4078 3470067 - 3470013 - T 91 -14.4 -3.01712 | gap 3, opp_overlap 3470036 3470040 3470062 CTGGCGTGGTTAAGA CGGGTGGTCGCCACCGGCCTC-ACGCC CCTC GGCGTTGAGGGCGATG-CG-CCACCCC TCCAGCCGGGTGCTT atoS 3472100 - 3470007 - | sensory box sensor histidine kinase AtoS TERM 4079 3471156 - 3471120 - G 83 -15.1 -3.24188 | opp_overlap 3471126 GGAGAGCAGCAGCAA CACCACCACGCCGGAGC CCA GCTCCAGCAGGTTGGTG AGGTAGGTACGGATG AHA_3073 3473487 - 3472132 - | acetoacetate metabolism regulatory protein AtoC TERM 4080 3473524 - 3473553 + H 70 -5 -4.42386 | ACAAGGTTCCGGGAT TGTCCCACCG ACCTTATAAA CTGTGGGACA TTTTGTCGCTAACCG AHA_3074 3473736 - 3474578 + | extracellular tungstate binding protein AHA_3075 3474646 - 3475347 + | molybdenum transport system permease protein ModB TERM 4081 3475864 - 3475921 + GF 90 -8.2 -4.77036 | overlap 3475866 GCACATCAGCATTTT GTCTGGCGGCGAGCG-CCAGCGGCTGGC CATG GCCCGCGCCTGGGCGCT-GCAGCCCGCC TTTTTGCTGATGGAC AHA_3076 3475463 - 3476158 + | molybdenum transport ATP-binding protein ModC TERM 4082 3476355 - 3476309 - gf 74 -11.5 -3.16191 | gap 1 CGAGATCCTGATCAA CGCCAACCGCAGCCAG-GCCCG CTAC CAGGCGCTGGCCCCGGTCATCG GCGATGACAGCCCCG mobA 3476130 - 3476768 + | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 4083 3477296 - 3477306 + G 71 -8.2 -3.84825 | opp_overlap 3477276, overlap 3477278 CAGCAGGAGCAGGCG CCGG GGG CCGG TTTCCTGTCGGTCGA AHA_3078 3476765 - 3478510 + | molybdopterin biosynthesis MoeA protein AHA_3079 3478574 - 3479632 + | inner membrane protein YeeA TERM 4084 3479638 - 3479656 + T 100 -17.4 -3.50853 | opp_overlap 3479638 CCACCCATAGCAAAA CGCCCCGC AAA GCGGGGCG TTGTCGTTAAAAGGC TERM 4085 3479656 - 3479638 - T 100 -17.4 -4.3586 | opp_overlap 3479638 CCACCCATAGCAAAA CGCCCCGC AAA GCGGGGCG TTGTCGTTAAAAGGC AHA_3080 3481076 - 3479703 - | metal-dependent phosphohydrolase AHA_3081 3481784 - 3481164 - | ABC-type multidrug transport system, ATPase and permease component TERM 4086 3481909 - 3481864 - R 93 -13.9 -3.90922 | gap 1 AGCCTGTCGAAATAA CGGTCAGGGTGACAGCC-TGCC TCT GACAAGGCAGGCCCCCCGACCG GCATCAGATGGAGAG AHA_3082 3483181 - 3481913 - | methyl-accepting chemotaxis protein AHA_3083 3483863 - 3483402 - | acetyltransferase TERM 4087 3483637 - 3483600 - G 74 -14.1 -2.94416 | gap 1 CATGTTGAGCAGATA GCCCTCCCT-CCCCGCCA GGT TGCCGGGATAGGGCGGGC GCACGAAGAGGGCCA TERM 4088 3483916 - 3483900 - R 72 -11.5 -3.05844 | TCGTTGAGGTGAACA GGCACCC TAC GGGCGCC TGAACAAAGCGCCAG AHA_3084 3484385 - 3483942 - | DoxX TERM 4089 3484147 - 3484101 - G 76 -9.2 -4.0098 | overlap 3484076 3484127 3484128 GTTGAAGGCAAACAA CAGGGCGGCGACCGGCCGGG TAAAGAG CCCGACCAGCAGCAGCACCG GCAGCAGCAGCTCGG AHA_3085 3485146 - 3484391 - | hypothetical protein TERM 4090 3484939 - 3484925 - G 73 -12.8 -3.21099 | CTCTGCCAGCACGAA GCCGCG CGC CGCGGC GTCGAAAAACGCCTC AHA_3086 3485987 - 3485139 - | hypothetical protein TERM 4091 3486054 - 3486017 - R 84 -9.1 -4.26079 | gap 1, overlap 3486020 3486021 GCAAACCAGCCAAAA GAAGGCCACGGTGCC-CC TGA GGCAACACCGTGGCACCC AGCCTTACTTGGGTT TERM 4092 3486051 - 3486020 - R 84 -9.4 -4.23486 | gap 1, overlap 3486017 3486021 AACCAGCCAAAAGAA GGCCACGGTGCC-CC TGA GGCAACACCGTGGCA CCCAGCCTTACTTGG TERM 4093 3486050 - 3486021 - R 81 -12.9 -3.13007 | gap 1, overlap 3486020 3486017 ACCAGCCAAAAGAAG GCCACGGTGCC-CC TGA GGCAACACCGTGGC ACCCAGCCTTACTTG AHA_3087 3486322 - 3486059 - | signal peptide protein TERM 4094 3486569 - 3486586 + r 86 -14.1 -2.90194 | opp_overlap 3486569 GCAGGCAATAAAAAA CCCCGCC ACAG GGCGGGG TCTGATTGGCACGAT TERM 4095 3486586 - 3486569 - R 100 -14.1 -5.4833 | opp_overlap 3486569 GCAGGCAATAAAAAA CCCCGCC ACAG GGCGGGG TCTGATTGGCACGAT TERM 4096 3486645 - 3486660 + r 93 -9 -4.74103 | opp_overlap 3486638 3486645 CTTAATGACAAAAAA GACAGC CGCA GCTGTC TTTTTCAATTGAAAC TERM 4097 3486660 - 3486645 - R 100 -9 -5.37345 | opp_overlap 3486645, overlap 3486638 CTTAATGACAAAAAA GACAGC CGCA GCTGTC TTTTTCAATTGAAAC AHA_3088 3486881 - 3486681 - | hypothetical protein TERM 4098 3487046 - 3487033 - H 72 -3.8 -4.70169 | TTACAGGCAACAAAA GCTG GCAAAG CAGC TCCCGTCGACCAGAT AHA_3089 3487096 - 3487389 + | hypothetical protein TERM 4099 3491240 - 3491226 - g 82 -11.4 -4.07568 | opp_overlap 3491224 CGCCGCGCTGGAAAA CGGTGG TCG CCACCG CCGAGTATGTGCTGA AHA_3092 3487862 - 3491341 + | sensory box sensor histidine kinase/response regulator TERM 4100 3491359 - 3491386 + F 100 -9.8 -6.22802 | overlap 3491360 TCCACCGCCCAATCT GCGCCCTGGC TCACACTT GCCAGGGCGG TTTTTTTTTGTGCAG TERM 4101 3491360 - 3491385 + F 100 -13.3 -4.32054 | overlap 3491359 CCACCGCCCAATCTG CGCCCTGGC TCACACTT GCCAGGGCG GTTTTTTTTTGTGCA AHA_3093 3491744 - 3493429 + | peptide ABC transporter, periplasmic peptide-binding protein AHA_3094 3493549 - 3494532 + | peptide ABC transporter, permease protein TERM 4102 3494591 - 3494578 - g 74 -9.5 -3.9461 | opp_overlap 3494578 3494576 GCTGGGCAACAAGAA GGCCG CCTG CGGCC TCTTCATCGTGGTCA AHA_3095 3494534 - 3495454 + | chitooligosaccharide transport system permease protein TERM 4103 3496392 - 3496369 - g 71 -8.8 -3.86916 | overlap 3496370 CAGCAGTACACCAAA CTGGCCGAGA TCCG CCCCGGCCAA CAAACCGCCTGCCAC AHA_3096 3495451 - 3496473 + | peptide ABC transporter, ATP-binding protein AHA_3097 3496485 - 3497477 + | oligopeptide transport ATP-binding protein AppF TERM 4104 3497506 - 3497482 - f 76 -12.1 -3.02096 | overlap 3497475 TCTACCAATGACAGA TTGGCCGGACA CGG CGTCCGGCCAC GCCTCGCCACGGGGC TERM 4105 3498395 - 3498354 - g 82 -14.3 -3.28712 | gap 1, opp_overlap 3498384 GCCGGTTTTCGACAA GGGGGCGGCATG-GCCATCG CGG CGCTGGCCCGCGCCGCCCGC GAGAGCGTCAGCGGC AHA_3098 3497580 - 3499313 + | endochitinase AHA_3099 3499306 - 3500178 + | N-acetylglucosamine kinase TERM 4106 3500747 - 3500761 + G 76 -11.4 -3.71848 | GCCGGCATCGTGCCC CAGCCG GAT CGGCTG TTGTTGCTGGAGGGC AHA_3100 3500339 - 3502207 + | beta-hexosaminidase TERM 4107 3502225 - 3502242 + F 100 -14.1 -5.81032 | TTATCTTTTTTCCTT GGCGGCC CGAT GGCCGCC TTTTTTTTACGATTC AHA_3101 3502424 - 3503977 + | aerotaxis receptor Aer TERM 4108 3503995 - 3504025 + F 100 -24.2 -3.62775 | opp_overlap 3504003, overlap 3504003 CATTTGCCAGCCACC CGACAGAAGCGCCA CAA TGGCGCTTCTGTCG TTATTGACGAGTGAT TERM 4109 3504017 - 3504003 - f 77 -11.4 -3.50572 | opp_overlap 3504003 3503995 AGCCACCCGACAGAA GCGCCA CAA TGGCGC TTCTGTCGTTATTGA TERM 4110 3504003 - 3504017 + F 79 -11.4 -3.64831 | opp_overlap 3504003, overlap 3503995 AGCCACCCGACAGAA GCGCCA CAA TGGCGC TTCTGTCGTTATTGA AHA_3102 3504045 - 3504401 + | putative methylated-DNA binding protein AHA_3103 3504698 - 3504417 - | hypothetical protein TERM 4111 3504651 - 3504671 + g 76 -11.1 -3.74251 | opp_overlap 3504653, overlap 3504653 CCATCCGAAAACAAA AAGGCCCCT GCG AGGGGCCTC TTTCATCAGAGTGTG TERM 4112 3504653 - 3504669 + g 79 -13.7 -3.45324 | opp_overlap 3504653, overlap 3504651 ATCCGAAAACAAAAA GGCCCCT GCG AGGGGCC TCTTTCATCAGAGTG TERM 4113 3504669 - 3504653 - G 100 -13.7 -5.46706 | opp_overlap 3504653 3504651 ATCCGAAAACAAAAA GGCCCCT GCG AGGGGCC TCTTTCATCAGAGTG topA 3507320 - 3504699 - | DNA topoisomerase I TERM 4114 3505059 - 3505077 + g 72 -4.4 -4.62302 | GACCGGATCTTCCTT CGGCGGCG CGA TGTCACCG TTTTTCAGGATCTTA TERM 4115 3507434 - 3507448 + H 70 -2.8 -4.70887 | opp_overlap 3507420 TTTGCCCGGCAGCCC GAACCA CTT TGTTTC TTTATTTATTAATGC TERM 4116 3507475 - 3507489 + H 100 -4.2 -5.98675 | ATGCGAAGCCGAGCC GCGG GAAGCAA CCGC TTTTTTATTTTTATG astB 3507682 - 3509019 + | succinylarginine dihydrolase TERM 4117 3509053 - 3509082 + T 91 -15.1 -3.13033 | opp_overlap 3509059, overlap 3509059 TGCGCCGACGCCATC AAAAAAGCCGGGC AAGT GCCCGGCTTTTTC ATTTGGTTTTACGTT TERM 4118 3509076 - 3509059 - T 100 -14.1 -5.15634 | opp_overlap 3509059 3509053 GACGCCATCAAAAAA GCCGGGC AAGT GCCCGGC TTTTTCATTTGGTTT TERM 4119 3509059 - 3509076 + T 100 -14.1 -5.05577 | opp_overlap 3509059, overlap 3509053 GACGCCATCAAAAAA GCCGGGC AAGT GCCCGGC TTTTTCATTTGGTTT sohB 3510113 - 3509106 - | putative periplasmic protease TERM 4120 3509168 - 3509191 + g 75 -3.8 -4.76892 | gap 1, overlap 3509160 3509168 3509169 ACGCCACGGCGGCCT G-CTGGCCGAG CTT CTGGGTCAGGC TTTTTGGCTTGCTGT AHA_3107 3510347 - 3511102 + | short chain dehydrogenase/reductase family oxidoreductase TERM 4121 3511169 - 3511149 - f 72 -11.1 -3.12351 | opp_overlap 3511151, overlap 3511151 TGGGGTTACATTCAA TAGGGTGCC GTC GGCACCCTG TTGCAACATCCGCTC TERM 4122 3511167 - 3511151 - f 84 -13.7 -3.12327 | opp_overlap 3511151, overlap 3511149 GGGTTACATTCAATA GGGTGCC GTC GGCACCC TGTTGCAACATCCGC TERM 4123 3511151 - 3511167 + F 84 -13.7 -3.03124 | opp_overlap 3511149 3511151 GGGTTACATTCAATA GGGTGCC GTC GGCACCC TGTTGCAACATCCGC AHA_3108 3511202 - 3512086 + | LysR family transcriptional regulator AHA_3109 3513325 - 3512153 - | sugar efflux transporter AHA_3110 3513487 - 3514623 + | putative aminotransferase B TERM 4124 3514663 - 3514692 + GT 91 -14.9 -3.08813 | TCACCCTATGGGCAG TGACGGGGCCGGC AGCA GCCGGCCCCGCAA TATATTGAAGTCAGC TERM 4125 3514838 - 3514858 + GT 100 -12.6 -4.386 | GGCCGAATGCCAACC GGGATGGG CCAGC CCCATCCC TTTTATCAGCCATTG TERM 4126 3516021 - 3515966 - gT 71 -10.8 -3.30441 | overlap 3515941 3516003 GAGGACGCGGCACAA CCCGCCGGCGAGACGGGCGCCCCCTC CCCG GAAGGTACGCCCGCCACCTCGTCCGG GCAGACCCCTGGCGC AHA_3111 3514517 - 3516274 + | immunogenic protein TERM 4127 3516320 - 3516299 - T 87 -15.9 -2.97513 | opp_overlap 3516299, overlap 3516294 3516301 ACAGCCACAACGACA GAGGCCACC CAAG GGTGGCCTC TTTTTGTTTCGATAT TERM 4128 3516299 - 3516320 + T 100 -15.9 -5.31519 | opp_overlap 3516294 3516299 3516301 ACAGCCACAACGACA GAGGCCACC CAAG GGTGGCCTC TTTTTGTTTCGATAT TERM 4129 3516318 - 3516301 - T 81 -12.7 -3.03741 | opp_overlap 3516299, overlap 3516299 3516294 AGCCACAACGACAGA GGCCACC CAAG GGTGGCC TCTTTTTGTTTCGAT AHA_3112 3517253 - 3516345 - | LysR family transcriptional regulator purA 3517441 - 3518697 + | adenylosuccinate synthetase TERM 4130 3518748 - 3518730 - f 100 -14.6 -5.23316 | opp_overlap 3518730 CAGCACAGTAAAAAA CCGGCATC CAG GATGCCGG TTTTTTTATGCCCGG TERM 4131 3518730 - 3518748 + F 100 -14.6 -5.60993 | opp_overlap 3518730 CAGCACAGTAAAAAA CCGGCATC CAG GATGCCGG TTTTTTTATGCCCGG AHA_3114 3518912 - 3519448 + | putative phosphatidylethanolamine-binding protein TERM 4132 3519750 - 3519791 + G 86 -15.2 -3.5882 | gap 1, overlap 3519756 CCAGGCCGGCCCGCT CAGGGAGCC-GCGCCTGAC GGTCA GTCCGGCGCTGGCTTTCTG TTTCGAGCTGGTCTG TERM 4133 3519756 - 3519785 + G 89 -11.4 -4.33258 | gap 1, overlap 3519750 CGGCCCGCTCAGGGA GCC-GCGCCTGAC GGTCA GTCCGGCGCTGGC TTTCTGTTTCGAGCT AHA_3115 3519460 - 3520272 + | AraC/XylS family transcriptional regulator TERM 4134 3521155 - 3521136 - g 76 -11.4 -3.71607 | GGAACATCATGCAAA GCGGCAGC GCCA GCTACCGC ATCGATCGCACCCTG TERM 4135 3521728 - 3521701 - g 74 -9.9 -3.78934 | gap 2 CGTCTTCTACAACAA GCTCGCCGATCGC GGTG GCGA-CGGCG-GC AACTGGAACGAGCGC AHA_3116 3520457 - 3522937 + | hypothetical protein TERM 4136 3522997 - 3522957 - T 83 -14.8 -2.77899 | opp_overlap 3522968 3522995, overlap 3522968 TCTTTGCAGGAATGA GCCAACAAAAAGGCCTCC GCAAG GGAGGCCTTTCTTATGGC GCCGCCGCAGGTGGC TERM 4137 3522968 - 3522986 + T 93 -11.7 -4.30719 | opp_overlap 3522957 3522968 ATGAGCCAACAAAAA GGCCTCC GCAAG GGAGGCC TTTCTTATGGCGCCG TERM 4138 3522986 - 3522968 - T 100 -11.7 -5.11063 | opp_overlap 3522968, overlap 3522957 ATGAGCCAACAAAAA GGCCTCC GCAAG GGAGGCC TTTCTTATGGCGCCG TERM 4139 3522995 - 3523015 + T 73 -10.3 -3.34895 | opp_overlap 3522957 GGAGGCCTTTCTTAT GGCGCCGCC GCA GGTGGCGAC TTACTTGACGGTCAC tyrS-2 3524215 - 3523016 - | tyrosyl-tRNA synthetase AHA_3118 3524330 - 3525640 + | cell wall endopeptidase TERM 4140 3526772 - 3526800 + G 76 -10.1 -3.85698 | opp_overlap 3526771 CCGACTGGATGGAAG GCGCGGCGTTTGC CTG GCTGGCGCAGCGC TTTATCCACCGCCAA anmK 3525781 - 3526884 + | anhydro-N-acetylmuramic acid kinase TERM 4141 3526892 - 3526921 + T 100 -17.9 -3.8647 | opp_overlap 3526894, overlap 3526894 CTGCCTGACCCAATA GAGCAGGGCCGTC ACTC GACGGCCCTGCTG TTTCATCTCCTGCCT TERM 4142 3526919 - 3526894 - T 100 -20.5 -3.10344 | opp_overlap 3526894 3526892 GCCTGACCCAATAGA GCAGGGCCGTC ACTC GACGGCCCTGC TGTTTCATCTCCTGC TERM 4143 3526894 - 3526919 + T 100 -20.5 -3.51778 | opp_overlap 3526894, overlap 3526892 GCCTGACCCAATAGA GCAGGGCCGTC ACTC GACGGCCCTGC TGTTTCATCTCCTGC hchA 3527837 - 3526974 - | chaperone protein HchA TERM 4144 3527936 - 3527900 - H 95 -15.2 -3.53224 | gap 1, opp_overlap 3527901 3527924 CAGGGGCCGGGTAAA TGCG-CAGCGCCCTTCC CTCT GACAGGGCGCTGACGCA CGGCGCCCACGCAGT AHA_3121 3527987 - 3528094 + | hypothetical protein TERM 4145 3528400 - 3528390 - f 74 -8.2 -4.05033 | opp_overlap 3528390, overlap 3528391 GCCACCTCATAGAAA CCGG ATC CCGG TTTGCATCCGCTGGC TERM 4146 3528662 - 3528652 - f 78 -2.4 -5.1971 | ATCAAAAACGAAAAA GGAG TAT CGCC ATGAGTGGTACCATC AHA_3122 3528663 - 3529928 + | endoribonuclease L-PSP TERM 4147 3529973 - 3529951 - T 100 -14.9 -5.38549 | opp_overlap 3529951 TTTAAATAATAAAAA GAGACCGGC TAATG GCCGGTCTC TTTTTTGGTAACAGG TERM 4148 3529951 - 3529973 + T 100 -15.6 -5.14563 | opp_overlap 3529951 TTTAAATAATAAAAA GAGACCGGCT AAT GGCCGGTCTC TTTTTTGGTAACAGG TERM 4149 3530809 - 3530844 + T 83 -14.8 -2.73468 | opp_overlap 3530814, overlap 3530814 CCCCAAACAGCCATA AAAAACGCCCCCCATC TTGC GATGGAGGGCGTTTTA TCGTTCCGGCTATTG TERM 4150 3530814 - 3530839 + T 100 -14.7 -4.5442 | opp_overlap 3530814, overlap 3530809 AACAGCCATAAAAAA CGCCCCCCATC TTGC GATGGAGGGCG TTTTATCGTTCCGGC TERM 4151 3530839 - 3530814 - T 100 -16.9 -5.30686 | opp_overlap 3530814 3530809 AACAGCCATAAAAAA CGCCCCCCATC TTGC GATGGAGGGCG TTTTATCGTTCCGGC tkt 3532889 - 3530898 - | transketolase TERM 4152 3531951 - 3531992 + g 70 -7.2 -3.96892 | gap 1 GTGAGCAGCTTCATA GGCGGCGAACTTGGCAGCC CAGTC GGCTTCCA-GCTTGGCGCC TTTCTCCTGACCGTT metK 3533232 - 3534383 + | S-adenosylmethionine synthetase TERM 4153 3534421 - 3534405 - f 93 -13.7 -3.85698 | opp_overlap 3534405 CGCTTGTGGTATAAA GGGGAGC CTG GCTCCCC TTTTGCTTGTCCGCC TERM 4154 3534405 - 3534421 + F 100 -13.7 -4.48987 | opp_overlap 3534405 CGCTTGTGGTATAAA GGGGAGC CTG GCTCCCC TTTTGCTTGTCCGCC sprT 3534453 - 3534986 + | SprT protein AHA_3126 3534995 - 3535747 + | extracellular deoxyribonuclease AHA_3127 3535811 - 3536542 + | hypothetical protein gshB 3536657 - 3537610 + | glutathione synthase TERM 4155 3537658 - 3537688 + T 95 -18.4 -2.84999 | opp_overlap 3537663, overlap 3537663 TGAGCGAACGGTAAT AAAAAGAGGCGGCC CCG GGCCGCCTCTTTTC TATCCTGCCTTTGCT TERM 4156 3537663 - 3537683 + T 100 -18.3 -4.57755 | opp_overlap 3537663, overlap 3537658 GAACGGTAATAAAAA GAGGCGGCC CCG GGCCGCCTC TTTTCTATCCTGCCT TERM 4157 3537683 - 3537663 - T 100 -18.3 -5.10208 | opp_overlap 3537658 3537663 GAACGGTAATAAAAA GAGGCGGCC CCG GGCCGCCTC TTTTCTATCCTGCCT AHA_3129 3539347 - 3537722 - | methyl-accepting chemotaxis protein TERM 4158 3539414 - 3539401 - H 73 -5.2 -4.62471 | CGCAAGCGGTAAAAA GCGG TTTTGC CCGC CCCGGCGAACTGCCA AHA_3130 3539433 - 3540020 + | hypothetical protein TERM 4159 3540028 - 3540048 + F 77 -8.2 -4.09864 | ACAGCTGATGCCGTT TGCCACGC ATTTC GCGAGGCA TTTTGAGGAATCAAT AHA_3131 3540067 - 3540489 + | hypothetical protein TERM 4160 3540492 - 3540531 + T 75 -12.1 -2.88579 | gap 1, opp_overlap 3540494 GCAGTACGGTTGACA GACG-GGGGAGAGGCAGG TCAAT CCTGCCCCTCCCCATGCC TGTATCAGGCCTTGG TERM 4161 3540528 - 3540494 - T 81 -13.5 -2.8805 | opp_overlap 3540492 AGTACGGTTGACAGA CGGGGGAGAGGCAGG TCAAT CCTGCCCCTCCCCAT GCCTGTATCAGGCCT AHA_3132 3542041 - 3540536 - | inner membrane transporter YhiP TERM 4162 3542349 - 3542336 - R 74 -2.3 -4.98531 | GCTTTAAATTAAAAA GCCGA ACTA TCGTC ACTATTTATGATAAT TERM 4163 3542591 - 3542565 - R 70 -7.1 -4.07568 | opp_overlap 3542583 GGGCCTGGGGGAAAA CCGTGCGGCGC CCGAT ACGCCGCCAGG TTCAGGGCGCCAGGG AHA_3133 3543564 - 3542593 - | HTH-type transcriptional regulator YidZ AHA_3134 3544523 - 3543741 - | hypothetical protein TERM 4164 3544671 - 3544646 - R 73 -8.9 -3.91897 | opp_overlap 3544664, overlap 3544651 3544661 CGCCGCATCCATAAA GCGAACCGGCA CAGA TGCCGGCCAGC AGCAGACCGTTGATC TERM 4165 3544666 - 3544651 - R 73 -10.4 -3.33711 | opp_overlap 3544664, overlap 3544646 3544661 CATCCATAAAGCGAA CCGGCA CAGA TGCCGG CCAGCAGCAGACCGT TERM 4166 3545692 - 3545716 + r 100 -17.2 -3.61239 | opp_overlap 3545692 3545695, overlap 3545695 GAGGCCATGAGGCAA CAACGCCGGG ACTTG CCCGGCGTTG TTCTGTATCCATCTC TERM 4167 3545716 - 3545692 - R 100 -17.2 -3.09834 | opp_overlap 3545692 3545695, overlap 3545695 GAGGCCATGAGGCAA CAACGCCGGG ACTTG CCCGGCGTTG TTCTGTATCCATCTC TERM 4168 3545713 - 3545695 - R 86 -13.1 -3.69395 | opp_overlap 3545692 3545695, overlap 3545692 GCCATGAGGCAACAA CGCCGGG ACTTG CCCGGCG TTGTTCTGTATCCAT TERM 4169 3545695 - 3545713 + r 93 -13.1 -3.93398 | opp_overlap 3545695 3545692, overlap 3545692 GCCATGAGGCAACAA CGCCGGG ACTTG CCCGGCG TTGTTCTGTATCCAT ampC 3547041 - 3545770 - | beta-lactamase TERM 4170 3547991 - 3547941 - g 81 -15.5 -3.06815 | gap 2 ACGTGGCCGAACACA GGCTCAG-GGGCAG-CTTCGGGGTG CAG CGCGGCGAAGCCTGCCCGCTGAGCC AGCGCCTGCTGGCCC AHA_3136 3547109 - 3548029 + | MoxR protein AHA_3137 3548029 - 3549015 + | hypothetical protein TERM 4171 3549294 - 3549331 + G 72 -7.7 -4.11183 | gap 1 AGCTCATCGAGGTAC GGCGAG-AGCGGGATGTG GAG CAGGTGCTGCTGCTCGCC TTCTTTCTCGTCGCG TERM 4172 3550200 - 3550210 + G 76 -8.2 -4.14739 | ACTTTCTGTTCGAGA GCCG GCG CGGC TTTTGCGGTCACTAC TERM 4173 3550390 - 3550378 - g 83 -9.1 -4.30576 | overlap 3550380 TCTGGATGAGCAAAA CCGCT GGC AGCGG CTCGATCCCACCGCC AHA_3138 3549002 - 3550975 + | hypothetical protein TERM 4174 3551170 - 3551188 + T 100 -16 -3.78934 | opp_overlap 3551157 3551170 AACTCCCAAACGAAA GGGGAGCC AGT GGCTCCCC TTGTTGTCAGACAAC TERM 4175 3551188 - 3551170 - T 100 -16 -4.06903 | opp_overlap 3551170, overlap 3551157 AACTCCCAAACGAAA GGGGAGCC AGT GGCTCCCC TTGTTGTCAGACAAC agcS-2 3552660 - 3551218 - | amino acid carrier protein tal 3553392 - 3554354 + | transaldolase B TERM 4176 3554381 - 3554404 + T 100 -18.2 -5.75342 | opp_overlap 3554381 ATGAGCCGATGAAAA CCGGGTTCCC GCAA GGGAACCCGG TTTTTTTTGGACGCC TERM 4177 3554404 - 3554381 - T 100 -18.2 -4.2717 | opp_overlap 3554381 ATGAGCCGATGAAAA CCGGGTTCCC GCAA GGGAACCCGG TTTTTTTTGGACGCC TERM 4178 3554432 - 3554450 + T 77 -3.8 -5.10933 | overlap 3554433 GCCGGATCCTTGTCA TGTGTTCG TCA CGAAAACG TTTTATTTTCAATGC TERM 4179 3554700 - 3554725 + T 100 -20.5 -5.0133 | opp_overlap 3554700 ATCGAACTGTAAAAA CAAGGCCCCGG TTAA CCGGGGCCTTG TTTTTTAAGAGAGTG TERM 4180 3554725 - 3554700 - T 100 -20.5 -4.67234 | opp_overlap 3554700 ATCGAACTGTAAAAA CAAGGCCCCGG TTAA CCGGGGCCTTG TTTTTTAAGAGAGTG AHA_3141 3555296 - 3554748 - | hemerythrin HHE cation binding domain-containing protein TERM 4181 3555209 - 3555231 + g 71 -9.1 -3.81488 | opp_overlap 3555198 AATAGCTGACCCGCT GTTCGTCGC GAATG GCGGCGAGC TTGTGTTTGAGCAGA TERM 4182 3555421 - 3555393 - R 71 -4.5 -4.53303 | CATCTGCAGACAAAA CAGCGGGTAAC GCACAAT GCCACCCCCTG TTCATGCCCCCGCTC ung 3556122 - 3555454 - | uracil-DNA glycosylase TERM 4183 3556782 - 3556796 + H 84 -2.7 -5.38497 | overlap 3556782 3556783 TAATCCCTTCTTGCT CGCGC AAACC GCGCA TTTTTTGATTTAGAT AHA_3143 3556958 - 3557338 + | autonomous glycyl radical cofactor GrcA TERM 4184 3557385 - 3557370 - T 100 -11.8 -4.77036 | opp_overlap 3557370 CGGTATCATGAAAAA CGGCCC AAAC GGGCCG TTTTTTTATGGCTTG TERM 4185 3557370 - 3557385 + T 100 -11.8 -5.66684 | opp_overlap 3557370 CGGTATCATGAAAAA CGGCCC AAAC GGGCCG TTTTTTTATGGCTTG AHA_3144 3558749 - 3557469 - | C4-dicarboxylate transporter DctA TERM 4186 3559044 - 3558994 - R 100 -19.3 -5.5454 | gap 2, opp_overlap 3559011, overlap 3558996 CCAAAGAAATAAAAA CAGGCCGCAAACAAAAATGCCCCGC AGT GCGGGGCATTTTTATT-G-GGCCAG CGGGGCCTGACTCAG TERM 4187 3559042 - 3558996 - R 100 -20.5 -4.37595 | gap 2, opp_overlap 3559011, overlap 3558994 AAAGAAATAAAAACA GGCCGCAAACAAAAATGCCCCGC AGT GCGGGGCATTTTTATT-G-GGCC AGCGGGGCCTGACTC TERM 4188 3559011 - 3559029 + r 100 -16 -5.06414 | opp_overlap 3558996 3558994 GGCCGCAAACAAAAA TGCCCCGC AGT GCGGGGCA TTTTTATTGGGCCAG kdsA 3559910 - 3559056 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 4189 3560007 - 3560035 + r 75 -12.6 -2.54098 | gap 1, overlap 3560006 3560004 CTCGTCTGTTGCATC TCCCATGCC-TTG CATG CAACGGCATGGGA CTCTTCATTCGGCCA AHA_3146 3560886 - 3560086 - | hypothetical protein AHA_3147 3561281 - 3560898 - | invasion gene expression up-regulator TERM 4190 3561316 - 3561300 - R 80 -9.4 -4.15044 | GTGTCCTTGAACAAA GGCAGG TCCGG CCTGCC CGTCATCATCACTGA AHA_3148 3562173 - 3561325 - | protein methyltransferase HemK prfA 3563261 - 3562173 - | peptide chain release factor 1 hemA 3564650 - 3563313 - | glutamyl-tRNA reductase lolB 3564694 - 3565278 + | outer membrane lipoprotein LolB ispE 3565305 - 3566174 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase AHA_3154 3566469 - 3567485 + | ribose-phosphate pyrophosphokinase TERM 4191 3567499 - 3567528 + F 100 -19.5 -4.73388 | opp_overlap 3567507, overlap 3567507 GATAGACCCTGTTGT GACAAAAACCGCC AGCT GGCGGTTTTTGTC TTTTTAGTCCCAGTT TERM 4192 3567520 - 3567507 - f 95 -9.5 -4.82901 | opp_overlap 3567499 3567507 CTGTTGTGACAAAAA CCGCC AGCT GGCGG TTTTTGTCTTTTTAG TERM 4193 3567507 - 3567520 + F 100 -9.5 -5.36364 | opp_overlap 3567507, overlap 3567499 CTGTTGTGACAAAAA CCGCC AGCT GGCGG TTTTTGTCTTTTTAG AHA_3155 3567588 - 3569579 + | 5'-nucleotidase/2',3'-cyclic phosphodiesterase TERM 4194 3569629 - 3569609 - f 83 -15.4 -2.66733 | opp_overlap 3569609 CGGCAAGCCACACCA CGGGCCCC ACGCA GGGGCCCG TTTTGCTGCCGTTGG TERM 4195 3569609 - 3569629 + F 100 -15.4 -4.28361 | opp_overlap 3569609 CGGCAAGCCACACCA CGGGCCCC ACGCA GGGGCCCG TTTTGCTGCCGTTGG TERM 4196 3569847 - 3569795 - g 72 -7.8 -4.11275 | opp_overlap 3569832, overlap 3569785 3569796 3569799 3569830 3569838 ACAAGCCAAATCAAA CTGATCGTGGGTCTGGGCA-ATCCCG GCC CGGAATATGCCAAGACCCGCCA-CAA TGCCGGGGCCTGGTA pth 3569777 - 3570373 + | peptidyl-tRNA hydrolase ychF 3570608 - 3571699 + | GTP-binding protein YchF TERM 4197 3571708 - 3571729 + T 100 -15.9 -5.08824 | opp_overlap 3571710 CGTCTAATCCCATGA GAGGCCAGC ATTT GCTGGCCTC TTTTTTAACTGGCCA TERM 4198 3571727 - 3571710 - T 76 -12.7 -2.80994 | opp_overlap 3571708 TCTAATCCCATGAGA GGCCAGC ATTT GCTGGCC TCTTTTTTAACTGGC TERM 4199 3572893 - 3572906 + T 100 -8.1 -5.71712 | opp_overlap 3572893 3572891 3572889 GCAGTACCAAACAGA CCAGC TCAG GCTGG TTTTTTTGTATCCGG TERM 4200 3572919 - 3572930 + T 77 -7.2 -4.26344 | TGGTTTTTTTGTATC CGGC GTTT GCCG TTTTCCTCCCCCTCT TERM 4201 3573090 - 3573073 - T 100 -14.1 -5.06414 | opp_overlap 3573072 3573067 TGCGGGCAATAAAAA GGCGGCC CGCA GGCCGCC ATGTCGTTTGCTGTC AHA_3166 3574939 - 3573107 - | citrate transporter AHA_3167 3575202 - 3575924 + | nicotinamide mononucleotide transporter PnuC AHA_3168 3575921 - 3576646 + | uridine phosphorylase TERM 4202 3576685 - 3576648 - f 91 -14.1 -3.10344 | gap 1 CCCTGACGCAATAGA CCGGGTCTGCCGGGGCCG CAG CGGCCCCGGCAAAA-CGT TAAGCCCGGCACATT AHA_3169 3576735 - 3577445 + | cAMP-binding protein AHA_3170 3577489 - 3577806 + | hypothetical protein AHA_3171 3577904 - 3578275 + | hypothetical protein AHA_3172 3578305 - 3580116 + | trehalose-6-phosphate hydrolase AHA_3173 3580526 - 3582316 + | hypothetical protein TERM 4203 3582439 - 3582422 - f 95 -12.7 -4.19704 | opp_overlap 3582422 CAAGGCGATTCAAAA GGGCTCC TTTG GGAGCCC TTTTTATGGCTGATG TERM 4204 3582422 - 3582439 + F 100 -12.7 -4.88736 | opp_overlap 3582422 CAAGGCGATTCAAAA GGGCTCC TTTG GGAGCCC TTTTTATGGCTGATG TERM 4205 3582983 - 3583040 + G 71 -9.5 -3.68351 | overlap 3582984 3582986 CGAGATGCAGTCGGA AGGGGGCGCCATCGCCGCCGTCCACGG CGCG CTGCAGACCGGGGCGCTGGCGACCTCG TTTACCTCGTCCCAG nifJ-2 3582804 - 3586349 + | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 4206 3586394 - 3586371 - T 100 -18.2 -4.26202 | opp_overlap 3586371 AGACCCACCAACAAA CAGGGCTCCC CATG GGGAGCCCTG TTGCTATGTCGCCGT TERM 4207 3586371 - 3586394 + T 100 -18.2 -3.322 | opp_overlap 3586371 AGACCCACCAACAAA CAGGGCTCCC CATG GGGAGCCCTG TTGCTATGTCGCCGT AHA_3175 3587904 - 3586417 - | EmrB/QacA family drug resistance transporter AHA_3176 3587959 - 3588555 + | phosphatase YqaB TERM 4208 3588609 - 3588578 - T 81 -12.5 -3.14132 | gap 1, opp_overlap 3588584, overlap 3588584 TGCCCCTGCCACCAA TG-AAAACGCCTCC GCAAA GGAGGCGTTTTGCA TGCAGCAGTACCGGG TERM 4209 3588602 - 3588584 - T 95 -11.7 -4.45544 | opp_overlap 3588584, overlap 3588578 TGCCACCAATGAAAA CGCCTCC GCAAA GGAGGCG TTTTGCATGCAGCAG TERM 4210 3588584 - 3588602 + T 91 -11.7 -4.18018 | opp_overlap 3588584 3588578 TGCCACCAATGAAAA CGCCTCC GCAAA GGAGGCG TTTTGCATGCAGCAG AHA_3177 3589438 - 3588641 - | hypothetical protein TERM 4211 3589469 - 3589489 + r 72 -3.9 -4.81814 | opp_overlap 3589470, overlap 3589470 TTGCGGGTACAGACA AGGGCAC CAGTTCA GTGCCCC TTTTATTGTCGTGGT AHA_3178 3591017 - 3589548 - | succinylglutamic semialdehyde dehydrogenase TERM 4212 3591038 - 3591057 + r 93 -13.6 -3.85114 | ACTCCCTGTGGTTCG CAGGCAGC CTTG GCTGCCTG TTTCATATGCGGTTT astA 3592107 - 3591088 - | arginine N-succinyltransferase beta subunit argD 3593400 - 3592183 - | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 4213 3592961 - 3592925 - G 73 -10.7 -3.64703 | GGCTTGGGACCGAAA CCATCGGAGTAGGCAGC CTG GCCGCCGACGCTGACGG TAAAGAAGGTACGAC AHA_3181 3594259 - 3593678 - | para-aminobenzoate synthase glutamine amidotransferase component II AHA_3182 3594495 - 3594280 - | hypothetical protein TERM 4214 3594595 - 3594570 - R 75 -6.1 -4.64861 | overlap 3594574 GTCGGGTAAAACAAA GAAAGCCAGGC AAAT ACCCAGCTCTC TTCTACTACACCTTC TERM 4215 3594591 - 3594574 - R 74 -3.3 -4.8743 | overlap 3594570 GGTAAAACAAAGAAA GCCAGGC AAAT ACCCAGC TCTCTTCTACTACAC trpS-2 3595623 - 3594619 - | tryptophanyl-tRNA synthetase gph-2 3596331 - 3595663 - | phosphoglycolate phosphatase rpe 3597130 - 3596318 - | ribulose-phosphate 3-epimerase TERM 4216 3597375 - 3597358 - R 100 -12.7 -5.43414 | opp_overlap 3597358 AGCAGACATAAAAAA CGGCACC CCCA GGTGCCG TCTGTGTCAGCCGAG TERM 4217 3597358 - 3597375 + r 79 -12.7 -2.98823 | opp_overlap 3597358 AGCAGACATAAAAAA CGGCACC CCCA GGTGCCG TCTGTGTCAGCCGAG AHA_3186 3598254 - 3597382 - | DNA adenine methylase TERM 4218 3598308 - 3598290 - R 90 -5.8 -5.1675 | GCATCGACCAAAAAA GGGGGACG ATT CTACCCCC TTCCCGGCCAAAATG AHA_3187 3599932 - 3598325 - | DamX-related protein TERM 4219 3599440 - 3599458 + g 75 -11.6 -3.60475 | CGACTTCCAGCTCCA GCGCGGGC ATC GCCCGCCC TTTCAGCTGCGCCTT TERM 4220 3599666 - 3599654 - G 74 -4.8 -4.60487 | CAGCATGCGGAAAAA GCTG TCTGC CAGC GCATCCTGCGGGTTG aroB 3601004 - 3599922 - | 3-dehydroquinate synthase aroK-2 3601537 - 3601019 - | shikimate kinase TERM 4221 3601666 - 3601696 + r 100 -17.7 -3.76289 | opp_overlap 3601649 3601646 ACTGGCAACCGCAGC CCTTACGCCCCAG CCTCA TTGGGGCGTAAGG TTATATGTGTTTTAC pilQ 3603930 - 3601729 - | type IV pilus secretin PilQ TERM 4222 3603531 - 3603543 + g 83 -6.9 -4.82901 | CTGTGGTGGCTGGCA GCGGC ATG GCTGC TTTTTCTCCCAGAGC AHA_3191 3604475 - 3603945 - | type IV pilus biogenesis protein PilP pilO 3605071 - 3604472 - | type IV pilus biogenesis protein PilO pilN 3605646 - 3605068 - | type IV pilus biogenesis PilN TERM 4223 3605599 - 3605632 + g 73 -6.6 -4.33928 | gap 1 GAATTGCTTCTTCTG CCGCTGGGCCCTGGC CTCAC GCCAGGGCA-GGAGG TTTATATTTGACATG pilM 3606704 - 3605634 - | type IV pilus biogenesis protein PilM mrcA 3606991 - 3609480 + | penicillin-binding protein 1A TERM 4224 3609527 - 3609495 - T 100 -15.7 -3.24137 | opp_overlap 3609498 3609503, overlap 3609503 AATCACCGCAGAAGA TAAAAAAACCGGCGC AAT GCGCCGGTTTTCTTT TTTGTGGCCTTGTAG TERM 4225 3609498 - 3609524 + T 100 -15.2 -5.27923 | opp_overlap 3609495 3609503, overlap 3609503 CACCGCAGAAGATAA AAAAACCGGCGC AAT GCGCCGGTTTTC TTTTTTGTGGCCTTG TERM 4226 3609519 - 3609503 - T 100 -15.1 -5.84432 | opp_overlap 3609498 3609503, overlap 3609495 CAGAAGATAAAAAAA CCGGCGC AAT GCGCCGG TTTTCTTTTTTGTGG TERM 4227 3609503 - 3609519 + T 100 -15.1 -5.49579 | opp_overlap 3609503 3609495, overlap 3609498 CAGAAGATAAAAAAA CCGGCGC AAT GCGCCGG TTTTCTTTTTTGTGG AHA_3196 3610587 - 3609556 - | hydrogen peroxide-inducible genes activator TERM 4228 3610589 - 3610553 - G 100 -16.5 -4.39426 | overlap 3610556 3610557 GACAGGCCGATAAAA CAAGGCGGGCCCGGATC CAG GATCCGGGCCCGCAACA GCGAGCATCCAACCC TERM 4229 3610586 - 3610556 - G 100 -22.6 -4.31397 | overlap 3610553 3610557 AGGCCGATAAAACAA GGCGGGCCCGGATC CAG GATCCGGGCCCGCA ACAGCGAGCATCCAA TERM 4230 3610585 - 3610557 - G 100 -26.1 -3.18115 | overlap 3610556 3610553 GGCCGATAAAACAAG GCGGGCCCGGATC CAG GATCCGGGCCCGC AACAGCGAGCATCCA AHA_3197 3612248 - 3610608 - | methyl-accepting chemotaxis protein AHA_3198 3613106 - 3612471 - | thioredoxin domain-containing protein TERM 4231 3613154 - 3613137 - R 100 -14.1 -5.40474 | ATTCGGCTAAAAAAA CCGGGCC CTCG GGCCCGG TAAAAAAACACAGGG AHA_3199 3614047 - 3613187 - | Zn-dependent hydrolase AHA_3200 3614174 - 3615073 + | LysR family transcriptional regulator TERM 4232 3615132 - 3615099 - T 100 -15.3 -3.84996 | opp_overlap 3615099 3615108, overlap 3615101 3615102 AAGAGACAATGCAAA CATGCGAAAGGGGCC GGCA GGCCCCTTTCGCGCA TATGTCACACCCATC TERM 4233 3615099 - 3615132 + T 79 -13.1 -2.87344 | opp_overlap 3615099 3615101 3615102, overlap 3615108 AAGAGACAATGCAAA CATGCGAAAGGGGCC GGCA GGCCCCTTTCGCGCA TATGTCACACCCATC TERM 4234 3615130 - 3615101 - T 100 -17.9 -3.49837 | opp_overlap 3615099 3615108, overlap 3615099 3615102 GAGACAATGCAAACA TGCGAAAGGGGCC GGCA GGCCCCTTTCGCG CATATGTCACACCCA TERM 4235 3615129 - 3615102 - T 100 -21.4 -2.69179 | opp_overlap 3615099 3615108, overlap 3615101 3615099 AGACAATGCAAACAT GCGAAAGGGGCC GGCA GGCCCCTTTCGC GCATATGTCACACCC TERM 4236 3615108 - 3615123 + T 81 -11.8 -3.57119 | opp_overlap 3615102 3615101 3615099, overlap 3615099 TGCAAACATGCGAAA GGGGCC GGCA GGCCCC TTTCGCGCATATGTC AHA_3201 3615932 - 3615156 - | hypothetical protein AHA_3202 3616109 - 3616966 + | hypothetical protein TERM 4237 3617055 - 3617069 + F 74 -11.4 -3.18582 | CTGGCCAGCCAGTCC GCCCTC GCC GAGGGC TTCATCAGTCGCCTG AHA_3203 3617115 - 3617834 + | M24/M37 family peptidase TERM 4238 3617892 - 3617864 - T 88 -11.2 -4.07885 | gap 1, opp_overlap 3617871, overlap 3617865 3617871 CAGGGGCGCTCAAAA CGAAAAAGGCAGC CTAG GCTGCCTTTTT-G ATGGCCGAATGATGA TERM 4239 3617892 - 3617865 - T 72 -11.4 -3.04517 | opp_overlap 3617871, overlap 3617864 3617871 AGGGGCGCTCAAAAC GAAAAAGGCAGC CTAG GCTGCCTTTTTG ATGGCCGAATGATGA TERM 4240 3617886 - 3617871 - T 100 -10.4 -5.0925 | opp_overlap 3617871, overlap 3617864 3617865 GCTCAAAACGAAAAA GGCAGC CTAG GCTGCC TTTTTGATGGCCGAA TERM 4241 3617871 - 3617886 + T 100 -10.4 -4.72272 | opp_overlap 3617871 3617864 3617865 GCTCAAAACGAAAAA GGCAGC CTAG GCTGCC TTTTTGATGGCCGAA AHA_3204 3619327 - 3617912 - | mate efflux family protein TERM 4242 3618536 - 3618515 - G 78 -5.1 -4.81551 | gap 1 GAGGTACATCAAAAA GCT-CGACAC CCC GAGTCGCAGC GTCTCCCCCATCAAC TERM 4243 3619056 - 3619013 - G 71 -5 -4.52589 | overlap 3619017 CTTGCCCAGATAAAA CGAGGCGAGCGCCGAGGAGC CCAT GCCGATCAGCGCCCCCACCG CATAGAGCACGGCGC TERM 4244 3620159 - 3620123 - g 70 -12.2 -3.21276 | opp_overlap 3620130, overlap 3620121 3620124 TGCGCCGCGACAAGA CCGAGCAGGCGCTGGC GGAGA GCGAGCGCCTGCGCAA GCAGCTCACCTCCGA TERM 4245 3620158 - 3620124 - g 71 -13.5 -2.52623 | opp_overlap 3620130, overlap 3620123 3620121 GCGCCGCGACAAGAC CGAGCAGGCGCTGGC GGAGA GCGAGCGCCTGCGCA AGCAGCTCACCTCCG AHA_3205 3619402 - 3622680 + | small conductance mechanosensitive Ion channel (MscS) family protein TERM 4246 3622807 - 3622835 + G 71 -13.1 -3.01712 | opp_overlap 3622807 3622804 3622803 GGCCATCGAAATCGA CGTGCAGCTGGCC GAC GGCCAGCTGTGGG TGTTCCACGACCGGC AHA_3206 3622703 - 3623422 + | glycerophosphoryl diester phosphodiesterase family protein TERM 4247 3624678 - 3624658 - g 95 -11.1 -4.59511 | overlap 3624659 AACATGGCGGAAAAA TCGAGCCAG GGT CTGGCTCGC CAGCAAAACGAGATC TERM 4248 3624677 - 3624659 - g 82 -14.6 -3.34984 | overlap 3624658 ACATGGCGGAAAAAT CGAGCCAG GGT CTGGCTCG CCAGCAAAACGAGAT AHA_3207 3623548 - 3625425 + | methyl-accepting chemotaxis protein TERM 4249 3625457 - 3625441 - f 83 -10.8 -3.93369 | opp_overlap 3625441 TCAACCGCAATCAAA GGGGCC ACACA GGCCCC TTTTTTTATAGAAAA TERM 4250 3625441 - 3625457 + F 100 -10.8 -5.60993 | opp_overlap 3625441 TCAACCGCAATCAAA GGGGCC ACACA GGCCCC TTTTTTTATAGAAAA TERM 4251 3625688 - 3625666 - f 74 -3.4 -4.95854 | overlap 3625660 TAAAAAACTTAAAAA CTTTATGGGT AAT ACCTAAAAAG AGAGGTGTTTCTCAT TERM 4252 3626864 - 3626846 - g 75 -3.7 -4.78107 | opp_overlap 3626858 CAGGAGCAGCAAAAA GGCCGCG TGATC CAGGGCC CGATGGGCGATGTGG frdA 3625943 - 3627727 + | fumarate reductase flavoprotein subunit AHA_3209 3627720 - 3628454 + | fumarate reductase iron-sulfur subunit AHA_3210 3628471 - 3628869 + | fumarate reductase subunit C AHA_3211 3628982 - 3629338 + | fumarate reductase subunit D TERM 4253 3629378 - 3629362 - T 83 -10.8 -4.06904 | opp_overlap 3629362 TGACGCAATGACAAA CCGGGC CAAGT GCCCGG TTTTTTTATAGCTCC TERM 4254 3629362 - 3629378 + T 100 -10.8 -5.64274 | opp_overlap 3629362 TGACGCAATGACAAA CCGGGC CAAGT GCCCGG TTTTTTTATAGCTCC TERM 4255 3629502 - 3629514 + T 70 -6.9 -4.12188 | CCAGAGCGTCGGCGC CGGCT CAC GGCCG TTTTCCGCGTAGTAG AHA_3212 3630182 - 3629484 - | hypothetical protein TERM 4256 3630224 - 3630200 - H 73 -8.7 -3.88787 | opp_overlap 3630200 3630200 TGAGACTCCGATAAA TTAGGAAACTA ATT TCGTTTCCTAA TTTAAACTATGCCTG TERM 4257 3630200 - 3630224 + H 70 -8.7 -3.64103 | opp_overlap 3630200, overlap 3630200 TGAGACTCCGATAAA TTAGGAAACTA ATT TCGTTTCCTAA TTTAAACTATGCCTG AHA_3213 3630276 - 3630917 + | TetR family transcriptional regulator TERM 4258 3631044 - 3631028 - T 100 -10.8 -5.61596 | opp_overlap 3631028 ACCGCCATAAAAAAA CCGGGC GCCAG GCCCGG TTGTTGATGCTGGTC TERM 4259 3631028 - 3631044 + T 76 -10.8 -3.75738 | opp_overlap 3631028 ACCGCCATAAAAAAA CCGGGC GCCAG GCCCGG TTGTTGATGCTGGTC TERM 4260 3631098 - 3631079 - T 71 -4.8 -4.56597 | opp_overlap 3631069 TGTCGGCGGTAAAAA GCGCCGCG TCAC CTCGTCGC TGTAACCGCTGTCCT AHA_3214 3631834 - 3631058 - | hypothetical protein AHA_3215 3633111 - 3631891 - | hypothetical protein AHA_3216 3633883 - 3633245 - | methyltransferase domain-containing protein AHA_3217 3634101 - 3634745 + | thermostable hemolysin AHA_3218 3634742 - 3636208 + | long-chain acyl-CoA synthetases AHA_3219 3636205 - 3636864 + | long-chain acyl-CoA synthetase AHA_3220 3636861 - 3637706 + | short chain dehydrogenase AHA_3221 3637708 - 3638346 + | TPR repeat-containing protein TERM 4261 3638374 - 3638411 + F 88 -11.3 -4.08216 | opp_overlap 3638376, overlap 3638376 TCAGAGCGCTATTTA AACTCTGCCCACCAG CTTGCATA CTGGTGGGCAGCGTC TTTTGAGGGGAATAA TERM 4262 3638409 - 3638376 - f 95 -14.6 -3.65529 | opp_overlap 3638374 3638376 AGAGCGCTATTTAAA CTCTGCCCACCAGC TTGCAT ACTGGTGGGCAGCG TCTTTTGAGGGGAAT TERM 4263 3638376 - 3638409 + F 89 -13.9 -3.63922 | opp_overlap 3638376, overlap 3638374 AGAGCGCTATTTAAA CTCTGCCCACCAG CTTGCATA CTGGTGGGCAGCG TCTTTTGAGGGGAAT AHA_3222 3638429 - 3639118 + | DNA-binding response regulator TERM 4264 3639322 - 3639306 - g 95 -10.1 -4.64676 | CTATCTCGAACAAAA TGGCGAG CTG CCCGCCA ACGGCACCGTCTATC TERM 4265 3640288 - 3640260 - g 82 -14.6 -3.36803 | CAACCTCATCGACAA CGCCCTGCGC TACACCCAG GCGCAGGGCG AGATCGCGGTCGAGG AHA_3223 3639115 - 3640554 + | sensor histidine kinase TERM 4266 3640559 - 3640599 + T 100 -19.9 -3.19192 | opp_overlap 3640571, overlap 3640562 3640571 GCCCTGCCTGATCAT CACCATAAAAAACGGGGGC CAG GCCCCCGTTTTTTATGTCG TTCGCTTCCCTCAGC TERM 4267 3640562 - 3640596 + T 100 -24.6 -2.79188 | opp_overlap 3640571, overlap 3640559 3640571 CTGCCTGATCATCAC CATAAAAAACGGGGGC CAG GCCCCCGTTTTTTATG TCGTTCGCTTCCCTC TERM 4268 3640587 - 3640571 - T 100 -15.1 -5.32882 | opp_overlap 3640562 3640559 3640571 CATCACCATAAAAAA CGGGGGC CAG GCCCCCG TTTTTTATGTCGTTC TERM 4269 3640571 - 3640587 + T 100 -15.1 -5.42131 | opp_overlap 3640571, overlap 3640562 3640559 CATCACCATAAAAAA CGGGGGC CAG GCCCCCG TTTTTTATGTCGTTC AHA_3224 3641116 - 3640610 - | ATP-dependent Zn proteases TERM 4270 3641428 - 3641450 + H 84 -3.3 -5.42259 | opp_overlap 3641428 CTACACTGTTGTAAA CCGGAGG GCCTGAAAA CCACCGG TTTTTTTGCGCCTGC guaC 3641522 - 3642565 + | guanosine 5'-monophosphate oxidoreductase TERM 4271 3642581 - 3642544 - f 76 -10.6 -3.71552 | overlap 3642547 ACGTGAGCAAGAGAA CAATGTCTACGGCAAG GAGTAA CCTGCCGCAGCCACTG TCACGCGCTGACGGT TERM 4272 3642578 - 3642547 - f 76 -8.7 -3.98627 | overlap 3642544 TGAGCAAGAGAACAA TGTCTACGGCAAG GAGTAA CCTGCCGCAGCCA CTGTCACGCGCTGAC TERM 4273 3642611 - 3642634 + F 100 -11.7 -5.76633 | opp_overlap 3642603 3642611 TTAGAAGCCAGTCAA CCGGTGTGC TACCCT GCGCACCGG TTTTTTTGTATCTGG AHA_3226 3642660 - 3643868 + | hypothetical protein TERM 4274 3644004 - 3643984 - g 71 -8.3 -3.85817 | ATGGTGGTCCAGAAA GCCGAATTC AAC AAATCCGGC CGTAACTCCGCCGTG efp 3643912 - 3644478 + | translation elongation factor P TERM 4275 3644523 - 3644507 - f 100 -13.7 -5.05782 | opp_overlap 3644507 ATCCATGGTAAAAAA GCGAGCC TTT GGCTCGC TTTTTTTATGGGTGC TERM 4276 3644507 - 3644523 + F 100 -13.7 -5.64274 | opp_overlap 3644507 ATCCATGGTAAAAAA GCGAGCC TTT GGCTCGC TTTTTTTATGGGTGC AHA_3228 3644620 - 3645246 + | inner membrane protein YjdF TERM 4277 3645321 - 3645272 - f 77 -7.8 -4.36914 | opp_overlap 3645271 3645272 TCCCCCTTCAGAAAA CCGGCC-TGGTGCCGCTAACCCGA GTAA CCGGGGGAGCG-CACTATGGCCAG ATTGTTCTTATCACT AHA_3229 3645314 - 3646066 + | hypothetical protein TERM 4278 3646567 - 3646585 + G 70 -10.2 -3.6149 | overlap 3646573 GCTGCTGGAGGGACG CTGGCAGC AGA GCGGCCAG TTCTGCTTCTTCGAT AHA_3230 3646184 - 3647140 + | glycerate dehydrogenase TERM 4279 3647159 - 3647188 + T 76 -12.1 -3.14344 | opp_overlap 3647162, overlap 3647162 3647164 ACGCGCCGACCCAAA CAAGAGAGGGGCC TGTC GGCCCCTCTCTCA TTGCTGGCAGCGATC TERM 4280 3647185 - 3647162 - T 100 -18.2 -3.96216 | opp_overlap 3647159 3647162 3647164 CGCCGACCCAAACAA GAGAGGGGCC TGTC GGCCCCTCTC TCATTGCTGGCAGCG TERM 4281 3647162 - 3647185 + T 95 -18.2 -2.77899 | opp_overlap 3647162, overlap 3647159 3647164 CGCCGACCCAAACAA GAGAGGGGCC TGTC GGCCCCTCTC TCATTGCTGGCAGCG TERM 4282 3647164 - 3647183 + T 86 -15 -2.93723 | opp_overlap 3647162, overlap 3647162 3647159 CCGACCCAAACAAGA GAGGGGCC TGTC GGCCCCTC TCTCATTGCTGGCAG AHA_3231 3647672 - 3647202 - | surface antigen family protein AHA_3232 3649435 - 3647882 - | GGDEF, putative TERM 4283 3649525 - 3649507 - H 74 -6.7 -4.28548 | ATTCATTGATTAAAA TCAGCCG CCCTC CGGCTAA CTGACAAAAAACATA TERM 4284 3649608 - 3649597 - H 85 -4.4 -5.24003 | opp_overlap 3649597 AACAAAAAGTAAAAA CAGT GACC ACTG TGCGTTGACGGCTAA AHA_3233 3649724 - 3650326 + | nitroreductase family protein TERM 4285 3650365 - 3650347 - T 84 -13.8 -3.09516 | opp_overlap 3650347 TCGTCCACCACCCAA GCCCCCGC TCG ACGGGGGC TTTTTGTTGTCAGGC TERM 4286 3650347 - 3650365 + T 100 -13.1 -5.18726 | opp_overlap 3650347 TCGTCCACCACCCAA GCCCCCG CTCGA CGGGGGC TTTTTGTTGTCAGGC AHA_3234 3651025 - 3650375 - | phosphatase YfbT AHA_3235 3651267 - 3651022 - | hypothetical protein TERM 4287 3651598 - 3651621 + G 70 -10.2 -3.53811 | opp_overlap 3651612 CTCACCCAGGCGAGC GCCCTGGTCG AACA CGGCAAGGGC TTTGAACGCCATGCC AHA_3236 3651385 - 3652293 + | isoleucine biosynthesis transcriptional activator TERM 4288 3652382 - 3652406 + T 72 -12.1 -2.77013 | overlap 3652381 AGGCGGCCGGCAGCG CGCTGCAGCTG ACG CAGTGGCAGCG ATTCTTGCCCCCCTG AHA_3237 3653321 - 3652365 - | GGDEF domain-containing protein AHA_3238 3654127 - 3653483 - | cold-shock protein, DNA-binding TERM 4289 3653600 - 3653570 - G 86 -8.2 -4.57569 | opp_overlap 3653578 GCAGTTTTGCAAAAA CCAGGTCGCCTCCT CGC AGGAGGTCATCTGG GAGCAATACTGCCGA TERM 4290 3653846 - 3653806 - G 77 -14.6 -2.87132 | gap 1, opp_overlap 3653829 TGCGGCGCCGATAGA CGGGGCGCGGGC-GTGCCC TGGC GGGCAGAGGCCGCTCCCCG GTCACAGCCTGTCTG TERM 4291 3654203 - 3654174 - R 100 -15 -4.08216 | TCATGTTGCCCAAAA TGGCTGCGGCCC GACAGG GGGCCGCAGACA AAATGTCAAAACAGT AHA_3239 3654810 - 3654244 - | isochorismatase family protein AHA_3240 3656007 - 3654844 - | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase TERM 4292 3655665 - 3655681 + g 72 -7.9 -4.22652 | opp_overlap 3655663 TGCGTCTGAGCAACG CCAGCTG CAC CAGCCGG TTTTCGATGATGTAG miaB 3656275 - 3657708 + | tRNA-I(6)A37 thiotransferase enzyme MiaB TERM 4293 3658141 - 3658120 - g 77 -13.7 -3.36749 | GACGGTCAAGACCAA GCGCGGCCT CATC AAGCCGCGC AGCCCCAACCAGGCC AHA_3242 3657764 - 3658807 + | PhoH family protein AHA_3243 3658804 - 3659268 + | hypothetical protein TERM 4294 3659377 - 3659365 - g 75 -4.1 -4.70453 | AACCAAGAGAGAAAA TGACC GAC GATCA CCCTAGTACCGGCTC corC 3659364 - 3660248 + | magnesium and cobalt efflux protein CorC TERM 4295 3660262 - 3660294 + F 100 -15.6 -3.53012 | opp_overlap 3660268 AAGCCTTGACCCTTG CCAACAGCGCCCCG CCCGT CGGGGTGCTGTTCG TTTGGCCGCACGCCC lnt 3660468 - 3662012 + | apolipoprotein N-acyltransferase TERM 4296 3662064 - 3662035 - Tf 90 -12.1 -3.9398 | opp_overlap 3662038, overlap 3662038 3662040 GTACAACCCGATAAA TGAGAGAGGCGCC CAAG GGCGCCTCTCTTC TGTTCAGTCTGATAC TERM 4297 3662061 - 3662038 - Tf 100 -18.2 -3.02632 | opp_overlap 3662038, overlap 3662035 3662040 CAACCCGATAAATGA GAGAGGCGCC CAAG GGCGCCTCTC TTCTGTTCAGTCTGA TERM 4298 3662038 - 3662061 + TF 100 -18.2 -3.70446 | opp_overlap 3662038 3662035 3662040 CAACCCGATAAATGA GAGAGGCGCC CAAG GGCGCCTCTC TTCTGTTCAGTCTGA TERM 4299 3662059 - 3662040 - Tf 91 -15 -3.06265 | opp_overlap 3662038, overlap 3662038 3662035 ACCCGATAAATGAGA GAGGCGCC CAAG GGCGCCTC TCTTCTGTTCAGTCT AHA_3246 3662716 - 3662228 - | hypothetical protein leuS 3662709 - 3665441 + | leucyl-tRNA synthetase TERM 4300 3665508 - 3665530 + FH 78 -11.9 -3.16676 | opp_overlap 3665509, overlap 3665506 AGCAAACGGATGATA ACGGCGGGC CCTGC GCCCGCCGC TCTTCACTTCATGCA TERM 4301 3665529 - 3665509 - fH 95 -15.4 -3.45776 | opp_overlap 3665508 3665506 GCAAACGGATGATAA CGGCGGGC CCTGC GCCCGCCG CTCTTCACTTCATGC rlpB 3665541 - 3666041 + | rare lipoprotein B TERM 4302 3666108 - 3666125 + G 73 -12.7 -3.1458 | opp_overlap 3666108, overlap 3666106 3666104 GCGGATCACCTCAAA GCAGGGC TCAA GCCCTGC TATCTCATTTTTGGG TERM 4303 3666125 - 3666108 - g 77 -12.7 -3.62096 | opp_overlap 3666106 3666104 3666108 GCGGATCACCTCAAA GCAGGGC TCAA GCCCTGC TATCTCATTTTTGGG AHA_3249 3666066 - 3666212 + | DNA polymerase III, delta subunit TERM 4304 3666252 - 3666267 + G 74 -10.4 -3.72037 | opp_overlap 3666254 CGGACCATCTCAAGG CAGGGC TCAA GCCCTG TTATCTCATTTTTGG holA 3666212 - 3667243 + | DNA polymerase III, delta subunit nadD 3667284 - 3667928 + | nicotinate (nicotinamide) nucleotide adenylyltransferase TERM 4305 3668443 - 3668420 - g 78 -6.6 -4.60487 | overlap 3668422 TACCAGCTGGAAAAA CTCTGGAGCG GCAC CGCTCAAGTG AACGCGCAATAACCG AHA_3252 3668114 - 3668455 + | iojap superfamily protein AHA_3253 3668478 - 3668945 + | SPOUT methyltransferase superfamily protein TERM 4306 3670865 - 3670832 - gf 80 -8.8 -4.13767 | gap 1 CCTGGTACTGGAAAA CGCCGGTGGCGGC AGCAGCATG GCCGCC-CCGGTG GCCCGCCAGATGCTG AHA_3254 3669051 - 3670967 + | penicillin-binding protein 2 TERM 4307 3671458 - 3671469 + GF 86 -7.2 -4.8083 | overlap 3671452 ACCTCCATTCTGGTG GCCG CCTC CGGC TTTTTCGTGATCTTC mrdB 3670882 - 3672063 + | rod shape-determining protein RodA AHA_3256 3672060 - 3672197 + | rod shape-determining protein RodA mltB-2 3672293 - 3673195 + | lytic murein transglycosylase B rlpA 3673137 - 3674102 + | rare lipoprotein A TERM 4308 3675346 - 3675326 - g 74 -14.7 -2.53995 | opp_overlap 3675325 3675326 AGCGAGCTGAAGGCA CCGCTGGCC AAG GGCCAACGG GTTGGTACCGTGTTC AHA_3259 3674297 - 3675487 + | penicillin-binding protein TERM 4309 3675503 - 3675538 + F 86 -10.5 -4.13767 | gap 2, opp_overlap 3675500 3675510, overlap 3675507 3675509 3675510 3675512 CCCGCGCACAAACCT GACCAAACAGCGGCGCC AACA GGCGCCGCTGCT-G-TC TTTTGCGGTCGGGCC TERM 4310 3675507 - 3675536 + F 89 -13.5 -3.6692 | opp_overlap 3675500 3675510, overlap 3675503 3675509 3675510 3675512 CGCACAAACCTGACC AAACAGCGGCGCC AACA GGCGCCGCTGCTG TCTTTTGCGGTCGGG TERM 4311 3675509 - 3675534 + F 100 -16.1 -3.41366 | opp_overlap 3675500 3675510, overlap 3675507 3675503 3675510 3675512 CACAAACCTGACCAA ACAGCGGCGCC AACA GGCGCCGCTGC TGTCTTTTGCGGTCG TERM 4312 3675533 - 3675510 - f 100 -19.6 -3.78351 | opp_overlap 3675509 3675507 3675503 3675510 3675512, overlap 3675500 ACAAACCTGACCAAA CAGCGGCGCC AACA GGCGCCGCTG CTGTCTTTTGCGGTC TERM 4313 3675510 - 3675533 + F 100 -19.6 -2.64337 | opp_overlap 3675510 3675500, overlap 3675509 3675507 3675503 3675512 ACAAACCTGACCAAA CAGCGGCGCC AACA GGCGCCGCTG CTGTCTTTTGCGGTC TERM 4314 3675512 - 3675531 + F 90 -16.4 -2.85585 | opp_overlap 3675510 3675500, overlap 3675510 3675509 3675507 3675503 AAACCTGACCAAACA GCGGCGCC AACA GGCGCCGC TGCTGTCTTTTGCGG AHA_3260 3675780 - 3676043 + | hypothetical protein TERM 4315 3676050 - 3676077 + F 82 -11.2 -3.90744 | overlap 3676053 GTCCTGTAAGTCGCC TCTCTCGCCCCG CCAC CGGGGCGACTGA TTATTTGCCAGCCGG TERM 4316 3676053 - 3676074 + F 72 -11.5 -3.02371 | overlap 3676050 CTGTAAGTCGCCTCT CTCGCCCCG CCAC CGGGGCGAC TGATTATTTGCCAGC lipB 3676140 - 3676844 + | lipoate-protein ligase B AHA_3262 3676841 - 3676933 + | hypothetical protein TERM 4317 3677421 - 3677391 - g 83 -15.4 -3.16564 | CGCCGACTGCATCAA GCAGATCCGCGAGC ACA GCCCGCAGACCCGC ATCGAGATCCTGACC lipA 3676930 - 3677895 + | lipoyl synthase TERM 4318 3677936 - 3677919 - f 100 -12.7 -5.00616 | opp_overlap 3677919 CCCCCGGTCAAAAAA GAGCGCC CAAG GGCGCTC TTTTTTATGGGTCGG TERM 4319 3677919 - 3677936 + F 100 -12.7 -5.28176 | opp_overlap 3677919 CCCCCGGTCAAAAAA GAGCGCC CAAG GGCGCTC TTTTTTATGGGTCGG TERM 4320 3678006 - 3677986 - f 75 -6.8 -4.37886 | opp_overlap 3677986 CGATTGCCGACAAAA GTCAGCGC CGTTT GCGCTCAC TTCGCTGCCGGGTTA AHA_3264 3678047 - 3678556 + | putative acetyltransferase AHA_3265 3678695 - 3679264 + | hypothetical protein TERM 4321 3679291 - 3679274 - T 95 -12.7 -4.19472 | CAATAGATGGCAAAA CGGCCAC TTGC GTGGCCG TTGCAACACTCAGCC nqrE-2 3679908 - 3679309 - | Na(+)-translocating NADH-quinone reductase subunit E AHA_3267 3680590 - 3680063 - | hypothetical protein AHA_3268 3681195 - 3680692 - | acetyltransferase AHA_3269 3682626 - 3681235 - | methyltransferase TERM 4322 3682537 - 3682518 - GR 100 -15 -5.24129 | TCTCTCCATAAAAAA CGGCCACC CTGA GGTGGCCG TCATCGGCAGCAAGA recJ 3684296 - 3682566 - | single-stranded-DNA-specific exonuclease RecJ TERM 4323 3683488 - 3683451 - GR 74 -9.8 -3.75153 | CGGCCCCAACGCAAA GCCGAGATCGG-CGGCGC ACAG GCGACGACCG-TCGCGGC CCGACACGTCCACCA TERM 4324 3684205 - 3684187 - GR 72 -12.4 -2.78384 | opp_overlap 3684178 3684193 CTGCGCTCCAGCAGA GCGGGATC TTC GACCCCGC GGCTGGCGAAGATTT dsbC 3684978 - 3684262 - | thiol:disulfide interchange protein DsbC mscL 3685239 - 3685646 + | large-conductance mechanosensitive channel TERM 4325 3685691 - 3685678 - f 100 -9.5 -5.44119 | opp_overlap 3685678 TGTATTCGAAAAAAA CCGCC TTCT GGCGG TTTTTTTGATACCAG TERM 4326 3685678 - 3685691 + F 100 -9.5 -5.52384 | opp_overlap 3685678 TGTATTCGAAAAAAA CCGCC TTCT GGCGG TTTTTTTGATACCAG TERM 4327 3685920 - 3685944 + F 72 -11.4 -3.12449 | overlap 3685919 3685927 3685929 GCTCGCCCTGCCCCT GCTGCTGCTG ACTGC CGGCAGCGGC TATCTGTTCGTCACC TERM 4328 3686494 - 3686484 - g 83 -6.8 -4.82667 | overlap 3686489 GTACGACATGAAAAA CCAC AGC GTGG TAGCCCACAGCGATC TERM 4329 3686937 - 3686917 - g 73 -3.1 -4.70659 | overlap 3686919 GCCGAGAGCGAAAAA GCCCAGCGC GAT GCCCTGACC GGGCTCTACAACCGC AHA_3274 3685975 - 3687381 + | GGDEF family protein xerD 3688277 - 3687378 - | tyrosine recombinase XerD AHA_3275 3688465 - 3688983 + | flavodoxin FldB TERM 4330 3689041 - 3689016 - f 72 -11.9 -2.62184 | gap 1 GGTGGCCTGATACTA GTGGCGATGGCC ACA AGCCATCGCC-C TCTCCCCGCACGGCA TERM 4331 3689187 - 3689200 + F 86 -3.7 -5.32882 | TCGGTATCATCGCAT GACGC TATA GCGAC TTTTTTGTGCTGGTC AHA_3276 3689296 - 3690696 + | TldD protein AHA_3277 3690696 - 3692036 + | putative PmbA-related protein TERM 4332 3692097 - 3692078 - f 100 -16.4 -4.18018 | opp_overlap 3692078 GCTCCCCACCCAAAA GCGGCGCC ATCA GGCGCCGC TTTTTTAGCTCTGGC TERM 4333 3692078 - 3692097 + F 100 -16.4 -5.1287 | opp_overlap 3692078 GCTCCCCACCCAAAA GCGGCGCC ATCA GGCGCCGC TTTTTTAGCTCTGGC AHA_3278 3692230 - 3692604 + | putative glyoxalase TERM 4334 3692655 - 3692630 - T 100 -19.1 -4.07133 | opp_overlap 3692630 3692633, overlap 3692633 CAGTGCCAGAAACAA CAACGGCGACC TCAT GGTCGCCGTTG TGCATTAGCCAGTCT TERM 4335 3692630 - 3692655 + T 100 -19.1 -2.53015 | opp_overlap 3692630 3692633, overlap 3692633 CAGTGCCAGAAACAA CAACGGCGACC TCAT GGTCGCCGTTG TGCATTAGCCAGTCT TERM 4336 3692652 - 3692633 - T 100 -15 -4.15703 | opp_overlap 3692630 3692633, overlap 3692630 TGCCAGAAACAACAA CGGCGACC TCAT GGTCGCCG TTGTGCATTAGCCAG TERM 4337 3692633 - 3692652 + T 95 -15 -3.41878 | opp_overlap 3692633 3692630, overlap 3692630 TGCCAGAAACAACAA CGGCGACC TCAT GGTCGCCG TTGTGCATTAGCCAG AHA_3279 3693606 - 3692680 - | LysM domain-containing protein TERM 4338 3693637 - 3693649 + r 73 -9.1 -3.80014 | opp_overlap 3693635 TTTCCTGTACCAAGT TGGCC GAC GGCCA TTTCATCCTCGGTCT TERM 4339 3693782 - 3693770 - R 78 -6.2 -4.72272 | opp_overlap 3693778, overlap 3693741 TTTTTGCATGAAAAA GCGC ATCCG GCGC CGCTGACGCCGCCTC TERM 4340 3693871 - 3693848 - R 70 -8.8 -3.68222 | opp_overlap 3693848 3693851, overlap 3693851 GCGCAAGCTGAACAA CAAGGAGGCC ATCG AGCCCCCCTG TTTCATCACGGGATC AHA_3280 3695168 - 3693885 - | glycosyl transferase family protein TERM 4341 3694551 - 3694533 - G 72 -4.4 -4.61231 | GGAGAGCTGCAAAAA GGCATCGG GGG CCGTCACC ATCACATCGGTGAAG AHA_3281 3696043 - 3695168 - | pyoverdine chromophore biosynthetic protein PvcB AHA_3282 3697028 - 3696054 - | pyoverdine chromophore biosynthetic protein PvcA TERM 4342 3697080 - 3697057 - R 75 -4 -4.91109 | overlap 3697061 TTGGCAGGATAAAAA TCAATAAAGA TGAC TCTTTATCAA TGCGTCCAGTCTCTG AHA_3283 3698420 - 3697584 - | alpha/beta fold family hydrolase AHA_3284 3698541 - 3699923 + | succinyl-CoA synthetase, alpha subunit TERM 4343 3699948 - 3699965 + T 100 -14.1 -4.43879 | opp_overlap 3699948 3699944 AGAGCAGATAAGCAA CGGGGCC CGCA GGCCCCG TTTTCATTGGATCGT TERM 4344 3699965 - 3699948 - T 95 -14.1 -3.51478 | opp_overlap 3699948, overlap 3699944 AGAGCAGATAAGCAA CGGGGCC CGCA GGCCCCG TTTTCATTGGATCGT AHA_3285 3703087 - 3699980 - | TtrA TERM 4345 3701753 - 3701780 + g 71 -14 -2.62396 | CCGCTCACACTGGTC GGCGGGCCTCGG CTCG CCGCTGCCCGCC TCCTCTACCAGCATG AHA_3286 3704193 - 3703087 - | tetrathionate reductase subunit C AHA_3287 3704971 - 3704183 - | tetrathionate reductase, subunit B TERM 4346 3705105 - 3705095 - H 85 -2.4 -5.46657 | opp_overlap 3705095, overlap 3705096 CAGCGCAATAAAAAA TGGC CCA GCCC TGTTGAACTGTGACC TERM 4347 3706043 - 3706021 - g 71 -12.7 -3.01712 | overlap 3706023 3706025 GGTCCTTCGCCAAGA CAGAGCGGG CCTCC CCCGCCCTG GCGCTGACGGTGACC AHA_3288 3705108 - 3707192 + | two component system histidine kinase AHA_3289 3707189 - 3707800 + | transcriptional regulatory protein FixJ lytS 3708025 - 3709719 + | sensor protein LytS TERM 4348 3710064 - 3710042 - g 71 -9.1 -3.73088 | opp_overlap 3710042 3710053 AGAGCGGATGAACAA GGCGCTGGA GCGCA TCCAGCGGC TGCTTTCGCCAAAGG AHA_3291 3709713 - 3710450 + | putative two-component response-regulatory protein YehT AHA_3292 3710666 - 3712474 + | carbon starvation protein A TERM 4349 3712492 - 3712515 + F 100 -16.8 -3.12668 | opp_overlap 3712492 3712496, overlap 3712496 CATCCGCTGCAACCA CAAACCCCGG CATG CCGGGGTTTG TTGCATCTGGCGGTC TERM 4350 3712515 - 3712492 - f 90 -16.8 -2.71144 | opp_overlap 3712492 3712496, overlap 3712496 CATCCGCTGCAACCA CAAACCCCGG CATG CCGGGGTTTG TTGCATCTGGCGGTC TERM 4351 3712511 - 3712496 - f 90 -11.8 -4.05446 | opp_overlap 3712492 3712496, overlap 3712492 CGCTGCAACCACAAA CCCCGG CATG CCGGGG TTTGTTGCATCTGGC TERM 4352 3712496 - 3712511 + F 93 -11.8 -4.23213 | opp_overlap 3712496 3712492, overlap 3712492 CGCTGCAACCACAAA CCCCGG CATG CCGGGG TTTGTTGCATCTGGC pepE 3712667 - 3713395 + | peptidase E TERM 4353 3713423 - 3713442 + F 100 -10 -5.44119 | gap 1, opp_overlap 3713421 GGCTGAAAACCCACA GGGGCG-CA GGA TGTCGCCCC TTTTTTTGCAATGAA fumC 3713469 - 3714863 + | fumarate hydratase TERM 4354 3714926 - 3714886 - T 86 -15.1 -2.86124 | gap 1, opp_overlap 3714895, overlap 3714895 CGGAGGGAAACATGA GAT-AAAAAAGAAGCCGG GCTGCG CCGGCTTCTTTTTTCATC AATGAGTCAGGGTTT TERM 4355 3714895 - 3714916 + T 100 -11.6 -5.1675 | opp_overlap 3714895 3714886 ACATGAGATAAAAAA GAAGCCGG GCTGCG CCGGCTTC TTTTTTCATCAATGA TERM 4356 3714916 - 3714895 - T 100 -11.6 -5.40625 | opp_overlap 3714895, overlap 3714886 ACATGAGATAAAAAA GAAGCCGG GCTGCG CCGGCTTC TTTTTTCATCAATGA AHA_3295 3715307 - 3714933 - | hypothetical protein AHA_3296 3715486 - 3715839 + | DsrE/DsrF-like family protein AHA_3297 3715974 - 3717056 + | sensor histidine kinase AHA_3298 3718274 - 3717060 - | major facilitator transporter TERM 4357 3718384 - 3718367 - R 100 -12.7 -5.90231 | opp_overlap 3718367 ACAAATATAAAAAAA GCCGACC CTGA GGTCGGC TTTTTCACGGCTCGG TERM 4358 3718367 - 3718384 + r 100 -12.7 -4.58395 | opp_overlap 3718367 ACAAATATAAAAAAA GCCGACC CTGA GGTCGGC TTTTTCACGGCTCGG AHA_3299 3720542 - 3718404 - | polynucleotide phosphorylase/polyadenylase TERM 4359 3720685 - 3720666 - R 100 -13.6 -5.45652 | opp_overlap 3720666 ACGCGCAATAAAAAA GGGGAACC CGGA GGTTCCCC TTTTTCGCGAAATCT TERM 4360 3720666 - 3720685 + r 100 -13.6 -4.57837 | opp_overlap 3720666 ACGCGCAATAAAAAA GGGGAACC CGGA GGTTCCCC TTTTTCGCGAAATCT rpsO 3720979 - 3720710 - | ribosomal protein S15 AHA_3301 3722122 - 3721124 - | tRNA pseudouridine synthase B rbfA 3722519 - 3722085 - | ribosome-binding factor A TERM 4361 3722324 - 3722340 + gr 70 -6.6 -4.11216 | CCTTGAGCCCTTCCT TGATGC GCTCG GCATCA TTTTCCAGCTGCAAG TERM 4362 3722443 - 3722464 + gr 71 -9.5 -3.57971 | gap 1, opp_overlap 3722459 CGCGGATCCTTGACC TCGCGCTGCA GAA TG-AGCGCGA TTTCACGCTGGATCT TERM 4363 3722537 - 3722556 + r 73 -9.2 -3.84825 | opp_overlap 3722539, overlap 3722539 TCTATCCTGCGATAA AAGGGGGC CGCG GCCCCCTA TTTAATCTGACTCCA TERM 4364 3722554 - 3722539 - R 93 -11.8 -4.3739 | opp_overlap 3722537 3722539 TATCCTGCGATAAAA GGGGGC CGCG GCCCCC TATTTAATCTGACTC TERM 4365 3722539 - 3722554 + r 81 -11.8 -3.51034 | opp_overlap 3722539, overlap 3722537 TATCCTGCGATAAAA GGGGGC CGCG GCCCCC TATTTAATCTGACTC AHA_3303 3725268 - 3722575 - | translation initiation factor IF-2 TERM 4366 3724463 - 3724487 + g 71 -5.5 -4.32951 | overlap 3724464 TTTTTCGGGCCCTTG GCAGCAGCGGC AGT GCGGCGGCTGG TTTCTTCCTTACGAT TERM 4367 3724754 - 3724783 + g 78 -4.9 -4.79352 | overlap 3724750 3724754 3724756 GCTGTGCTACCGGCT GCTTTGGCGGGCT GTTG AGCCTGTCGAGCC TTTTGTTGTGCCTCG TERM 4368 3724887 - 3724899 + g 85 -3.3 -5.24416 | overlap 3724888 GGGCCTTCTCTTCGG CCTCG CGA CGAGC TTTTTCTTCTGCTTC nusA 3726791 - 3725289 - | transcription elongation factor NusA AHA_3305 3727333 - 3726806 - | 15 kDa protein TERM 4369 3727303 - 3727291 - G 100 -6.2 -6.28401 | GAAAAAACAAAAAAA GGGC ATAAA GCCC AGATAGAAATTGGTT TERM 4370 3727364 - 3727344 - R 100 -12.6 -5.24796 | opp_overlap 3727338 3727337 TGCACATAACAAAAA GCCCCGAT GTCAA ATCGGGGC TTGGCGCTTTACCCT secG 3728019 - 3727693 - | preprotein translocase, SecG subunit tpiA-2 3728784 - 3728020 - | triosephosphate isomerase TERM 4371 3728914 - 3728876 - R 79 -11.1 -3.62522 | gap 1, opp_overlap 3728886, overlap 3728880 3728883 3728886 GAATCGTTTGAACAA GATACAACCAGGGCGGCT TAAA AGCCGCCCTTTTTGT-TC ATTAAAACGCCGATT TERM 4372 3728911 - 3728880 - R 83 -13 -3.26444 | opp_overlap 3728886, overlap 3728876 3728883 3728886 CGTTTGAACAAGATA CAACCAGGGCGGCT TAAA AGCCGCCCTTTTTG TTCATTAAAACGCCG TERM 4373 3728908 - 3728883 - R 70 -8.9 -3.76835 | opp_overlap 3728886, overlap 3728880 3728876 3728886 TTGAACAAGATACAA CCAGGGCGGCT TAAA AGCCGCCCTTT TTGTTCATTAAAACG TERM 4374 3728905 - 3728886 - R 86 -15 -2.96369 | opp_overlap 3728886, overlap 3728883 3728880 3728876 AACAAGATACAACCA GGGCGGCT TAAA AGCCGCCC TTTTTGTTCATTAAA TERM 4375 3728886 - 3728905 + r 100 -15 -5.1963 | opp_overlap 3728886 3728883 3728880 3728876 AACAAGATACAACCA GGGCGGCT TAAA AGCCGCCC TTTTTGTTCATTAAA glmM 3730250 - 3728916 - | phosphoglucosamine mutase folP 3731113 - 3730268 - | dihydropteroate synthase TERM 4376 3731159 - 3731141 - R 100 -13.1 -5.42975 | opp_overlap 3731141 TGACATAAAGAAAAA CCCCGGG GCCAG CCCGGGG TTTGTATCATCACGA TERM 4377 3731141 - 3731159 + r 95 -13.1 -4.08706 | opp_overlap 3731141 TGACATAAAGAAAAA CCCCGGG GCCAG CCCGGGG TTTGTATCATCACGA hflB 3733125 - 3731176 - | ATP-dependent metallopeptidase HflB TERM 4378 3732493 - 3732481 - G 82 -3.3 -5.12707 | CGAAATGGTAAAAAA GGGCA CCT TGGCC TCACCTGCAATGGCC rrmJ 3733800 - 3733171 - | ribosomal RNA large subunit methyltransferase J AHA_3314 3733898 - 3734194 + | hypothetical protein TERM 4379 3734219 - 3734195 - f 75 -11.5 -3.33696 | opp_overlap 3734192 3734197 3734202, overlap 3734197 3734202 CTGCCCCGCAAGTAA CAGGAAAGAGC ATC GCTCTTTCCTT CATTTCCCCTCTTCC TERM 4380 3734217 - 3734197 - f 95 -14.1 -3.23853 | opp_overlap 3734192 3734197 3734202, overlap 3734195 3734202 GCCCCGCAAGTAACA GGAAAGAGC ATC GCTCTTTCC TTCATTTCCCCTCTT TERM 4381 3734197 - 3734217 + F 95 -14.1 -3.54146 | opp_overlap 3734197 3734195 3734202, overlap 3734192 3734202 GCCCCGCAAGTAACA GGAAAGAGC ATC GCTCTTTCC TTCATTTCCCCTCTT AHA_3315 3734299 - 3734892 + | hypothetical protein TERM 4382 3734921 - 3734900 - T 100 -15.9 -4.32857 | opp_overlap 3734900 CCCGCTAAATACAAA CAGGGGAGC CGGG GCTCCCCTG TTCTGGCATCAAGCT TERM 4383 3734900 - 3734921 + T 100 -15.9 -3.32963 | opp_overlap 3734900 CCCGCTAAATACAAA CAGGGGAGC CGGG GCTCCCCTG TTCTGGCATCAAGCT AHA_3316 3735416 - 3734940 - | transcription elongation factor GreA TERM 4384 3735242 - 3735282 + g 75 -3.2 -4.88918 | gap 1, opp_overlap 3735249 3735250, overlap 3735237 3735250 CCTGGATACGGCCTT CACAGAA-GCCTTGCTGCT CGCG GGCAGCATGGTATTCGGCG TTTTCTTTCAGATCA TERM 4385 3735477 - 3735442 - R 88 -11.2 -4.07568 | gap 1, opp_overlap 3735445 3735466, overlap 3735447 TGGGTTGCTTGAAAA GAGAAGCTGCGGCTATC AGA GAGAGCCGCAGCTG-TC GGTTCGGATGAGGCA TERM 4386 3735445 - 3735475 + r 81 -14 -2.53876 | opp_overlap 3735442 3735447, overlap 3735466 GTTGCTTGAAAAGAG AAGCTGCGGCTATC AGA GAGAGCCGCAGCTG TCGGTTCGGATGAGG TERM 4387 3735473 - 3735447 - R 100 -16.6 -3.95435 | opp_overlap 3735445 3735466, overlap 3735442 TGCTTGAAAAGAGAA GCTGCGGCTATC AGA GAGAGCCGCAGC TGTCGGTTCGGATGA motB 3736470 - 3735571 - | flagellar motor protein MotB AHA_3318 3737237 - 3736479 - | chemotaxis protein PomA TERM 4388 3737377 - 3737387 + GH 74 -2.4 -4.87665 | TTTTCCGAGAGTTTA AGCC GAC GGCA TTTTTCTGCCTCCCC AHA_3319 3737212 - 3737709 + | exodeoxyribonuclease VII, small subunit AHA_3320 3737710 - 3738600 + | geranyltranstransferase dxs 3738622 - 3740487 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 4389 3740528 - 3740510 - T 100 -13.1 -4.41353 | opp_overlap 3740510 GCACACACAGTAAAA GGGCGCC GTTAT GGCGCCC TTTTTGTTTGTCTCG TERM 4390 3740510 - 3740528 + T 100 -13.8 -5.42975 | opp_overlap 3740510 GCACACACAGTAAAA GGGCGCCG TTA TGGCGCCC TTTTTGTTTGTCTCG AHA_3322 3741503 - 3740562 - | dipeptide transport system permease protein DppC TERM 4391 3741484 - 3741463 - G 76 -8.7 -4.14392 | opp_overlap 3741483, overlap 3741466 TCGGAATTTTTAAAA CGAGCCCAA CGGC TTGGGCTTG CAGTCACAGCATTAG AHA_3323 3742481 - 3741507 - | dipeptide transport system permease protein DppB TERM 4392 3742499 - 3742518 + r 74 -10 -3.65812 | TTGTCCTTCTACGTG GCCTGTGT CATG GCACAGGC TTCTGTTAGCAGGCG TERM 4393 3742575 - 3742617 + r 83 -12.9 -3.18681 | gap 1 GTCCTTCCTTGCAAC CTTCGCTTACTT-GCCGACC ACCA GGTCGCCGAAGTAAGGGAAG TTCATCACGTTGACC AHA_3324 3744137 - 3742581 - | peptide ABC transporter, periplasmic peptide-binding protein TERM 4394 3743412 - 3743447 + g 71 -11 -3.39895 | gap 1, opp_overlap 3743405, overlap 3743414 3743423 GTAGATCACGTCCAC GTCGCCACCCAGCAGGG CCG CCACGC-GGGTGGCGTC TTCCTTGATGGGCAC TERM 4395 3743414 - 3743445 + g 72 -12.2 -3.27029 | gap 1, opp_overlap 3743405, overlap 3743412 3743423 AGATCACGTCCACGT CGCCACCCAGCAGGG CCG CCACGC-GGGTGGCG TCTTCCTTGATGGGC AHA_3325 3745932 - 3744208 - | dipeptide transport ATP-binding protein DppD TERM 4396 3746405 - 3746430 + r 78 -11.9 -3.26471 | gap 1, opp_overlap 3746405 3746403 3746401 AAACAGAGATATATA GGGGGA-TGCCA GCA TGGCGCTCCCCC TTGCTGTCACCCTCA AHA_3326 3746937 - 3746443 - | phosphatidylglycerophosphatase A thiL 3747893 - 3746934 - | thiamine-monophosphate kinase TERM 4397 3747920 - 3747904 - R 100 -9.4 -4.84527 | opp_overlap 3747901 3747904 CCCATACAGTAAAAA GCCAGC AATAA GCTGGC TCCTCTCTTAGATGC nusB 3748367 - 3747954 - | transcription antitermination factor NusB ribE-2 3748966 - 3748382 - | 6,7-dimethyl-8-ribityllumazine synthase TERM 4398 3749758 - 3749778 + G 90 -18.3 -2.98823 | overlap 3749770 GGGGCCTTCCCCTGC GCCACCGGC AGC GCCGGTGGC TATGTCTACGCCCCC AHA_3330 3749050 - 3750249 + | tonin TERM 4399 3750259 - 3750286 + T 84 -12.8 -3.44334 | opp_overlap 3750260 3750263, overlap 3750254 3750260 3750263 CGCTGAGGCAAAACA ACAAGGGATGAC CGAG GTCATCCCTTGC TTCATATTCATTTCA TERM 4400 3750285 - 3750260 - T 100 -16.3 -4.21812 | opp_overlap 3750259 3750254 3750260 3750263, overlap 3750263 GCTGAGGCAAAACAA CAAGGGATGAC CGAG GTCATCCCTTG CTTCATATTCATTTC TERM 4401 3750260 - 3750285 + T 89 -16.3 -2.65877 | opp_overlap 3750260 3750263, overlap 3750259 3750254 3750263 GCTGAGGCAAAACAA CAAGGGATGAC CGAG GTCATCCCTTG CTTCATATTCATTTC TERM 4402 3750282 - 3750263 - T 93 -12.2 -4.22475 | opp_overlap 3750260 3750259 3750254 3750263, overlap 3750260 GAGGCAAAACAACAA GGGATGAC CGAG GTCATCCC TTGCTTCATATTCAT TERM 4403 3750263 - 3750282 + T 80 -12.2 -3.4617 | opp_overlap 3750263 3750260, overlap 3750260 3750259 3750254 GAGGCAAAACAACAA GGGATGAC CGAG GTCATCCC TTGCTTCATATTCAT AHA_3331 3751422 - 3750313 - | riboflavin biosynthesis protein RibA ribE-3 3752217 - 3751564 - | riboflavin synthase subunit alpha TERM 4404 3752239 - 3752256 + r 95 -14.1 -3.67976 | CACCTTGCTGATGAC GGGGGCG GTAC CGCCCCC TTTAACATTGATAAA ribD 3753381 - 3752272 - | riboflavin biosynthesis protein RibD nrdR 3753927 - 3753478 - | NrdR family transcriptional regulator TERM 4405 3753963 - 3753952 - R 74 -7.2 -4.18018 | overlap 3753953 GGCGTTGACGGAAAA GGGC GCCG GCCC CGGGGGCTGGCTCTA AHA_3335 3754540 - 3754061 - | hypothetical protein TERM 4406 3754599 - 3754576 - R 100 -15.4 -5.63504 | opp_overlap 3754579 AACGCCACAAAAAAA CAATGCCACC CGTG GGTGGCATTG GTCTCAAACCGGGTG TERM 4407 3754579 - 3754596 + r 74 -11.3 -3.25823 | opp_overlap 3754576 GCCACAAAAAAACAA TGCCACC CGTG GGTGGCA TTGGTCTCAAACCGG glyA 3755878 - 3754625 - | serine hydroxymethyltransferase AHA_3337 3756365 - 3757027 + | ADP-ribosylglycohydrolase family protein TERM 4408 3757053 - 3757069 + F 89 -9.3 -4.60255 | opp_overlap 3757053 3757054, overlap 3757054 CACATGCCCTGAAAA GGCCGCC TCT GGCGGCG TTTTTCCCGACTTGT TERM 4409 3757069 - 3757053 - f 80 -9.3 -4.09243 | opp_overlap 3757053 3757054, overlap 3757054 CACATGCCCTGAAAA GGCCGCC TCT GGCGGCG TTTTTCCCGACTTGT TERM 4410 3757068 - 3757054 - f 81 -12.8 -3.05224 | opp_overlap 3757053 3757054, overlap 3757053 ACATGCCCTGAAAAG GCCGCC TCT GGCGGC GTTTTTCCCGACTTG TERM 4411 3757054 - 3757068 + F 84 -12.8 -3.3543 | opp_overlap 3757054 3757053, overlap 3757053 ACATGCCCTGAAAAG GCCGCC TCT GGCGGC GTTTTTCCCGACTTG TERM 4412 3757641 - 3757679 + G 78 -15.2 -2.72855 | overlap 3757632 3757651 CGCGAACGGTGGCTC GGCGAGCAGGAGGCCTTG CTG CACGGCCATCTGCTGGCC TGGTTCCCCCATTTC AHA_3338 3757176 - 3757820 + | chaperone protein TorD TERM 4413 3758113 - 3758081 - g 76 -13.4 -3.14602 | overlap 3758079 TCGACTTCATCAACA GCAGCGGCAGCGAG GCCCA CTGGCTGCTGCTGC TCGCCCTGGCGCTGC AHA_3339 3757828 - 3758196 + | hypothetical protein TERM 4414 3758530 - 3758494 - gf 93 -15.9 -3.06261 | opp_overlap 3758498 CTTCAACCGGGAACA CGCCCTGTGGGACAGCT TCT ATCTGTCGCACAAGGCG ATGGCCGGCCAGCTG AHA_3340 3758366 - 3759505 + | hypothetical protein AHA_3341 3759477 - 3760127 + | hypothetical protein TERM 4415 3760157 - 3760139 - f 100 -13.1 -4.66953 | opp_overlap 3760137 3760135 3760139 GTAACACCGTAAAAA GGGGGCG AATGA CGCCCCC TCTCTTCCCTTCAGA TERM 4416 3760139 - 3760157 + F 81 -13.1 -3.1352 | opp_overlap 3760139, overlap 3760137 3760135 GTAACACCGTAAAAA GGGGGCG AATGA CGCCCCC TCTCTTCCCTTCAGA TERM 4417 3762230 - 3762260 + G 71 -11 -3.53012 | GGCAGGTTACGTGGA GCGGGTCGCCGCCA TCC TGGCCGAGACCGGC TTTCCGCCAGAGAAG TERM 4418 3762493 - 3762477 - g 71 -8.7 -3.96148 | CTGCCCGATGACAAA CACAGCC GGG AGCTGTG CCGCACCATCATCAA AHA_3342 3760233 - 3762683 + | MorA AHA_3343 3763026 - 3762730 - | hypothetical protein TERM 4419 3762797 - 3762813 + g 90 -2.2 -5.47159 | TCTTCCAGCAACGAG TCCTGC GGATA GGAGGA TTTTTTCTCTTCGAG acsA 3763195 - 3765141 + | acetyl-CoA synthetase TERM 4420 3765160 - 3765190 + F 77 -11.1 -3.48292 | opp_overlap 3765167, overlap 3765163 3765167 TGACTGCGTTCCTGC CTCCAAAGCCGGC CTCGA GCCGGCTTTGTCG TCTTTGCTACTGAGT TERM 4421 3765163 - 3765187 + F 87 -15.8 -2.88215 | opp_overlap 3765167, overlap 3765160 3765167 CTGCGTTCCTGCCTC CAAAGCCGGC CTCGA GCCGGCTTTG TCGTCTTTGCTACTG TERM 4422 3765183 - 3765167 - f 77 -11.5 -3.53012 | opp_overlap 3765163 3765160 3765167 GTTCCTGCCTCCAAA GCCGGCC TCG AGCCGGC TTTGTCGTCTTTGCT TERM 4423 3765167 - 3765183 + F 86 -10.8 -4.11033 | opp_overlap 3765167, overlap 3765163 3765160 GTTCCTGCCTCCAAA GCCGGC CTCGA GCCGGC TTTGTCGTCTTTGCT TERM 4424 3765334 - 3765296 - f 76 -9.7 -3.80697 | gap 1, opp_overlap 3765304, overlap 3765288 3765297 ACGAAATCAATATAA TTGCG-AAATCTGTGTGC CAGT GCACACCGATTTGCGCAG AAAATGACTAGATTT TERM 4425 3765333 - 3765297 - f 81 -13.2 -2.87334 | gap 1, opp_overlap 3765304, overlap 3765288 3765296 CGAAATCAATATAAT TGCG-AAATCTGTGTGC CAGT GCACACCGATTTGCGCA GAAAATGACTAGATT TERM 4426 3765598 - 3765622 + G 78 -12.1 -3.80573 | AGTTGGTCGGCCGCA TCCACCAGGCC ATG GGTCAGGTGGA TTTCATCATCATCAA aroQ 3765408 - 3765857 + | 3-dehydroquinate dehydratase, type II accB 3765894 - 3766349 + | acetyl-CoA carboxylase, biotin carboxyl carrier protein accC 3766365 - 3767705 + | acetyl-CoA carboxylase, biotin carboxylase TERM 4427 3767789 - 3767770 - f 100 -13.6 -4.56597 | opp_overlap 3767770 GCCTCTGTTGAAAAA GGGCCATG GCGA CATGGCCC TTTTTTGTTATCCTT TERM 4428 3767770 - 3767789 + F 100 -13.6 -5.59534 | opp_overlap 3767770 GCCTCTGTTGAAAAA GGGCCATG GCGA CATGGCCC TTTTTTGTTATCCTT AHA_3348 3767833 - 3768096 + | hypothetical protein TERM 4429 3768560 - 3768577 + G 73 -11.3 -3.55761 | ACCGGCCTCAGCTAC CAGCAGG GGCT CCTGCTG TTTGCCAGCTGCGTG panF 3768086 - 3769564 + | sodium/panthothenate symporter AHA_3350 3769642 - 3771069 + | pts system N-acetylglucosamine-specific eiicba component (eiicba-nag)(eii-nag) AHA_3351 3771920 - 3771072 - | LysR family transcriptional activator TERM 4430 3771620 - 3771600 - G 85 -14.7 -3.55071 | GTAGAGGGCCCGAAA CTCGGCCAG GAT CCGGCCGAG CAGCAGGGTGCCGGT AHA_3352 3772045 - 3773061 + | zinc-containing alcohol dehydrogenase superfamily protein TERM 4431 3773212 - 3773188 - f 100 -15.7 -5.73672 | overlap 3773189 AAAGAACCAAAAAAA GGGGCCATCCC GCC GGGATGGCCCT AAATACCTGAACGTT TERM 4432 3773211 - 3773189 - f 100 -19.2 -4.00543 | overlap 3773188 AAGAACCAAAAAAAG GGGCCATCCC GCC GGGATGGCCC TAAATACCTGAACGT TERM 4433 3773379 - 3773364 - f 100 -10.4 -5.81412 | CGCAGGCAAAAAAAA GCCACC CGAA GGTGGC TGAAAAAGATGACGG prmA 3773577 - 3774455 + | ribosomal protein L11 methyltransferase TERM 4434 3774475 - 3774505 + F 100 -17.7 -4.13767 | gap 1, opp_overlap 3774471 3774478, overlap 3774478 CACTTGCCAAACTAT CA-ACGGGGCTCCC ACAC GGGAGCCCCGTCTG TTTTCAACTCGCCGG TERM 4435 3774501 - 3774478 - f 100 -19.6 -3.32769 | opp_overlap 3774475 3774478, overlap 3774471 TTGCCAAACTATCAA CGGGGCTCCC ACAC GGGAGCCCCG TCTGTTTTCAACTCG TERM 4436 3774478 - 3774501 + F 100 -19.6 -3.41366 | opp_overlap 3774478 3774471, overlap 3774475 TTGCCAAACTATCAA CGGGGCTCCC ACAC GGGAGCCCCG TCTGTTTTCAACTCG AHA_3354 3774651 - 3775628 + | glyoxylate reductase AHA_3355 3775702 - 3776265 + | nodulation protein L TERM 4437 3776557 - 3776525 - T 77 -4.8 -4.89339 | overlap 3776529 AAGCACCCATAAAAA TGAAGCCCAATGTC ATCAA GACGTTGGGCTGTA AAAAGGTGCTACGGA TERM 4438 3776553 - 3776529 - T 76 -10 -3.88603 | overlap 3776525 ACCCATAAAAATGAA GCCCAATGTC ATCAA GACGTTGGGC TGTAAAAAGGTGCTA TERM 4439 3776616 - 3776596 - T 83 -8.4 -4.4009 | TCTCATCGCAGAAAA TTAGAAGG GGTCA CCTTCTAA ACTGGCACAGGGATA TERM 4440 3776793 - 3776776 - T 100 -11.3 -5.73978 | opp_overlap 3776776 ACCAGAAACAAAAAA GCCCTGA CGAG TCAGGGC TTTGCCGGTCATGAA TERM 4441 3776776 - 3776793 + T 77 -11.3 -3.58343 | opp_overlap 3776776 ACCAGAAACAAAAAA GCCCTGA CGAG TCAGGGC TTTGCCGGTCATGAA AHA_3356 3777362 - 3776814 - | nitroreductase family protein TERM 4442 3777440 - 3777424 - R 100 -12.3 -4.76075 | opp_overlap 3777424 ACCAGATGAAGAAAA CCCCTGA GCA TCAGGGG TTTGTCGCAATACAT TERM 4443 3777424 - 3777440 + r 86 -12.3 -3.87994 | opp_overlap 3777424 ACCAGATGAAGAAAA CCCCTGA GCA TCAGGGG TTTGTCGCAATACAT AHA_3357 3779484 - 3777469 - | 2,4-dienoyl-coa reductase (NADPH) sppA 3779795 - 3781639 + | signal peptide peptidase SppA, 67K type TERM 4444 3781686 - 3781651 - T 100 -16.4 -3.80573 | opp_overlap 3781662, overlap 3781662 CTGAGCAGCAGCAAA CGCAAAAAAAACCGCC TTGG GGCGGTTTTTTTTACA TCTGCCTCAAGGGGT TERM 4445 3781662 - 3781675 + T 100 -9.5 -5.83822 | opp_overlap 3781651 3781662 CAAACGCAAAAAAAA CCGCC TTGG GGCGG TTTTTTTTACATCTG TERM 4446 3781675 - 3781662 - T 100 -9.5 -5.89947 | opp_overlap 3781662, overlap 3781651 CAAACGCAAAAAAAA CCGCC TTGG GGCGG TTTTTTTTACATCTG AHA_3359 3782264 - 3781707 - | MutT/nudix family protein AHA_3360 3783071 - 3782271 - | hypothetical protein gap-1 3783326 - 3784699 + | glyceraldehyde-3-phosphate dehydrogenase AHA_3362 3784740 - 3785033 + | general negative regulator of transcription subunit 1 TERM 4447 3785071 - 3785097 + T 100 -16.6 -3.04157 | opp_overlap 3785072 3785074, overlap 3785074 CCGCGGCCACAGCAG AGAGGGGAGCCA ATA TGGCTCCCCTCC TATCTATCATGCTTC TERM 4448 3785096 - 3785072 - T 100 -20.1 -2.85351 | opp_overlap 3785071 3785074, overlap 3785074 CGCGGCCACAGCAGA GAGGGGAGCCA ATA TGGCTCCCCTC CTATCTATCATGCTT TERM 4449 3785074 - 3785094 + T 90 -16.9 -2.73771 | opp_overlap 3785074 3785072, overlap 3785071 CGGCCACAGCAGAGA GGGGAGCCA ATA TGGCTCCCC TCCTATCTATCATGC TERM 4450 3785094 - 3785074 - T 93 -16.9 -2.97747 | opp_overlap 3785071 3785074, overlap 3785072 CGGCCACAGCAGAGA GGGGAGCCA ATA TGGCTCCCC TCCTATCTATCATGC AHA_3363 3786788 - 3785130 - | hypothetical protein TERM 4451 3785781 - 3785801 + g 100 -6.7 -5.64304 | overlap 3785784 TACCTCACTTTTACT CGCGTGCGG GAT CCGCGCCTG TTTTTTCTTCTCTTC AHA_3364 3788911 - 3786797 - | MoxR-related protein TERM 4452 3789155 - 3789125 - R 100 -22.8 -4.63542 | opp_overlap 3789125 3789128 3789131 CATAATTGGTAAAAA CAAGAAGGGAGCCA TGA TGGCTCCCTTCTTG TTTATCCATACCTCA TERM 4453 3789125 - 3789155 + r 100 -22.8 -3.92869 | opp_overlap 3789125, overlap 3789128 3789131 CATAATTGGTAAAAA CAAGAAGGGAGCCA TGA TGGCTCCCTTCTTG TTTATCCATACCTCA TERM 4454 3789128 - 3789152 + r 100 -18.7 -4.09117 | opp_overlap 3789125, overlap 3789125 3789131 AATTGGTAAAAACAA GAAGGGAGCCA TGA TGGCTCCCTTC TTGTTTATCCATACC TERM 4455 3789131 - 3789149 + r 100 -14.6 -4.16305 | opp_overlap 3789125, overlap 3789128 3789125 TGGTAAAAACAAGAA GGGAGCCA TGA TGGCTCCC TTCTTGTTTATCCAT ansA 3790186 - 3789179 - | cytoplasmic asparaginase I TERM 4456 3789842 - 3789860 + g 82 -14.6 -3.31792 | GAGCGGGATCTGGGA GCCGGTGA TGA TCACCGGC TTGTGCAGATCCTCG TERM 4457 3790590 - 3790604 + H 77 -8.5 -4.20367 | TTTTTACGTGGGGCG GGGGC ATGTC GCCCC TTCTTTGTTGGCACC gltS 3790701 - 3791900 + | sodium/glutamate symporter TERM 4458 3791925 - 3791954 + T 86 -12.1 -3.84406 | opp_overlap 3791927, overlap 3791926 3791929 CGTCAGACGTCTATG AACAGAGCCCACC CCTT GGTGGGCTCTGCC TTATTCTGCTCGCCA TERM 4459 3791926 - 3791953 + T 87 -15.6 -2.90322 | opp_overlap 3791927, overlap 3791925 3791929 GTCAGACGTCTATGA ACAGAGCCCACC CCTT GGTGGGCTCTGC CTTATTCTGCTCGCC TERM 4460 3791952 - 3791927 - T 100 -19.1 -3.16191 | opp_overlap 3791926 3791925 3791929 TCAGACGTCTATGAA CAGAGCCCACC CCTT GGTGGGCTCTG CCTTATTCTGCTCGC TERM 4461 3791929 - 3791950 + T 85 -15.9 -2.6952 | opp_overlap 3791927, overlap 3791926 3791925 AGACGTCTATGAACA GAGCCCACC CCTT GGTGGGCTC TGCCTTATTCTGCTC TERM 4462 3792025 - 3792050 + T 100 -14.7 -3.96148 | opp_overlap 3792025 ACGCATAAACAAAAA GCCCCGCACTC GGCA GAGTACGGGGC TTTGTCATGGCGGCC TERM 4463 3792050 - 3792025 - T 100 -16.9 -5.38958 | opp_overlap 3792025 ACGCATAAACAAAAA GCCCCGCACTC GGCA GAGTACGGGGC TTTGTCATGGCGGCC AHA_3367 3793958 - 3792087 - | methyl-accepting chemotaxis protein TERM 4464 3794012 - 3794002 - H 78 -6.8 -4.58663 | AGGATTTCCCAAAAA GTGC ACA GCAC TGCGTAGTTATTAAC prfB 3794212 - 3795310 + | peptide chain release factor 2 (programmed frameshift) lysS 3795335 - 3796870 + | lysyl-tRNA synthetase TERM 4465 3796942 - 3796923 - T 100 -16.4 -4.42238 | opp_overlap 3796923 CCATGGCAATCAAAA CGCCCCGC AATT GCGGGGCG TTTTTTATGGCAGGC TERM 4466 3796923 - 3796942 + T 100 -16.4 -5.24129 | opp_overlap 3796923 CCATGGCAATCAAAA CGCCCCGC AATT GCGGGGCG TTTTTTATGGCAGGC AHA_3370 3797803 - 3797000 - | PhzF family phenazine biosynthesis protein TERM 4467 3797917 - 3797939 + H 75 -6.5 -4.52415 | opp_overlap 3797915 3797917 3797920 TTTAATGCAGTAATA GAATAAAAA AGACA TTTTTATTC TTTGTTGTTATCCAT AHA_3371 3797999 - 3799792 + | sulfite reductase [NADPH] flavoprotein, alpha-component cysI 3799792 - 3801504 + | sulfite reductase subunit beta TERM 4468 3801878 - 3801846 - g 72 -7.5 -4.19238 | overlap 3801847 CCCTCAACCTCAAAA TCTACCGGGCCGAGC TCA GTCCGGCCTGGCAGG AGGCCCGCTTCGGCC cysH 3801494 - 3802300 + | phosphoadenosine phosphosulfate reductase TERM 4469 3802355 - 3802336 - T 100 -16.4 -5.24129 | opp_overlap 3802336 GGCGCCCATAAAAAA CGCCCGGC AACA GCCGGGCG TTTTTCTTTGCGCAA TERM 4470 3802336 - 3802355 + T 100 -16.4 -5.27335 | opp_overlap 3802336 GGCGCCCATAAAAAA CGCCCGGC AACA GCCGGGCG TTTTTCTTTGCGCAA TERM 4471 3802388 - 3802373 - T 86 -10.4 -4.07568 | opp_overlap 3802372 TTTCTTTGCGCAAAA GGGTGG CATT CCACCC CTCATTACTTGGCGG proX 3803394 - 3802393 - | glycine betaine transporter periplasmic subunit AHA_3375 3804542 - 3803391 - | glycine betaine/L-proline ABC transporter, permease protein AHA_3376 3805735 - 3804539 - | glycine betaine/L-proline ABC transporter, ATP binding protein TERM 4472 3805610 - 3805623 + g 81 -3.7 -5.02074 | GACATCCTGGACCCC CAGGG TCTG CCCGG TTTTTTGCAGGATGC TERM 4473 3806206 - 3806182 - R 100 -20.1 -5.20333 | opp_overlap 3806182 TACGGACAACAAAAA GGCCCCTTGTG CAG CACAAGGGGCC TTTTATCTGCCAGAG TERM 4474 3806182 - 3806206 + r 100 -20.1 -4.52589 | opp_overlap 3806182 TACGGACAACAAAAA GGCCCCTTGTG CAG CACAAGGGGCC TTTTATCTGCCAGAG folA 3806728 - 3806237 - | dihydrofolate reductase AHA_3378 3807220 - 3806753 - | hypothetical protein AHA_3379 3808014 - 3807217 - | hypothetical protein AHA_3380 3808591 - 3808250 - | hypothetical protein TERM 4475 3808390 - 3808415 + g 74 -4.7 -4.57569 | CGTGCATCATGGCGG CAATCCGGATG CAGC TGTCCAGATTG TTTTTGGCCAGCTGA mogA 3808990 - 3809520 + | molybdenum cofactor biosynthesis protein TERM 4476 3809549 - 3809523 - T 80 -4.9 -5.09762 | opp_overlap 3809526, overlap 3809524 3809525 TCCGAAGAAATAAAA GCTGGGCGGGG ATTTG CCCCGCCCTTT GCTTATTTGCGACCG TERM 4477 3809547 - 3809525 - T 72 -11.9 -2.77779 | opp_overlap 3809526, overlap 3809524 3809523 CGAAGAAATAAAAGC TGGGCGGGG ATTTG CCCCGCCCT TTGCTTATTTGCGAC TERM 4478 3809526 - 3809546 + T 100 -15.4 -4.14764 | opp_overlap 3809525 3809524 3809523 GAAGAAATAAAAGCT GGGCGGGG ATTTG CCCCGCCC TTTGCTTATTTGCGA TERM 4479 3809968 - 3809992 + T 71 -10.7 -3.27029 | opp_overlap 3809961 3809968 3809965, overlap 3809966 ATAACAAAGACATGA TGCCTCCCG AAAAAAA CGGGGGGCA TATTAATTCATCAAG TERM 4480 3810060 - 3810014 - T 74 -10.1 -3.67976 | gap 2, overlap 3810007 3810015 TTCATCAAGGCTAAA CCCAGCCTGTACCGGCGCCCTGC CAG GCAGGGCACCGACACT--CAGGG CCAGCGTTTGAAGAT AHA_3382 3811281 - 3810055 - | 3-oxoacyl-(acyl carrier protein) synthase II fabG 3812003 - 3811278 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 4481 3811954 - 3811927 - G 72 -2.6 -4.68994 | gap 1, opp_overlap 3811947 ACCACGATGGAAAAA CCGTCGGCCGCCA GCT TGAGGGC-GATGG CGCGGCCTATCCCCT AHA_3384 3812474 - 3812013 - | thioester dehydrase family protein AHA_3385 3813651 - 3812467 - | 3-oxoacyl-(acyl-carrier-protein) synthase II AHA_3386 3814205 - 3813648 - | hypothetical protein AHA_3387 3816562 - 3814202 - | hypothetical protein TERM 4482 3814315 - 3814298 - G 71 -11.3 -3.42013 | overlap 3814311 AGGCGACAACAGGAA GGCGGTA AAGA TACCGCC GCTCAGCACCAGACC AHA_3388 3817227 - 3816613 - | hypothetical protein AHA_3389 3817649 - 3817224 - | 4-hydroxybenzoyl-CoA thioesterase domain-containing protein AHA_3390 3819240 - 3817678 - | phenylalanine and histidine ammonia-lyase AHA_3391 3820930 - 3819227 - | glycosyl transferase, group 2 family protein AHA_3392 3821298 - 3820927 - | 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase AHA_3393 3822652 - 3821282 - | acyl-coenzyme A synthetase AHA_3394 3823287 - 3822649 - | DNA gyrase subunit B AHA_3395 3823504 - 3823256 - | acyl carrier protein TERM 4483 3823433 - 3823472 + gr 74 -11.5 -3.25823 | gap 1, overlap 3823418 3823425 GGCCTCGGGGGTGAT GGCC-TCTTCGTCGACCT CGAAC AGCTCGACGAGGGCGGCC TTGATCTGGGCAAAG AHA_3396 3823795 - 3823508 - | putative acyl carrier protein AHA_3397 3824550 - 3823792 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase AHA_3398 3825248 - 3824535 - | beta-ketoacyl synthase domain-containing protein TERM 4484 3825323 - 3825300 - H 91 -9.6 -4.55023 | gap 1 GCGAAGACGATAAAA GGCACTCACCC GGC GGGC-AGTGCC TGCTCCACGACATTG AHA_3399 3825425 - 3825889 + | hypothetical protein AHA_3400 3825908 - 3826984 + | SAM-dependent methyltransferase AHA_3401 3827032 - 3827247 + | hypothetical protein TERM 4485 3827274 - 3827245 - T 100 -19.5 -3.80114 | opp_overlap 3827251, overlap 3827251 GATGAACTGAGCAAA TGAAAACAGGGGC CGCG GCCCCTGTTTTCA TGGTGCTCATGACCG TERM 4486 3827251 - 3827268 + T 100 -12.7 -4.32034 | opp_overlap 3827245 3827251 CTGAGCAAATGAAAA CAGGGGC CGCG GCCCCTG TTTTCATGGTGCTCA TERM 4487 3827268 - 3827251 - T 100 -12.7 -4.58773 | opp_overlap 3827251, overlap 3827245 CTGAGCAAATGAAAA CAGGGGC CGCG GCCCCTG TTTTCATGGTGCTCA AHA_3402 3828048 - 3827293 - | DNA/RNA non-specific endonuclease TERM 4488 3828181 - 3828194 + r 70 -6.7 -4.12397 | overlap 3828170 GGCGCCGCCAGCTGG GGGAT TGTC ATCCC TTTGTCATTGTGTCA TERM 4489 3828273 - 3828255 - R 100 -16 -4.76041 | GATAGGCATGAAAAA GCGGAGCC GGT GGCTCCGC TGCAATCATCACTCC AHA_3403 3829269 - 3828292 - | cytochrome c551 peroxidase TERM 4490 3830429 - 3830402 - g 75 -12 -3.66018 | gap 1 GCACCACCCCAACAA CCGCCCCGTGCAG CCG CTGCACGGT-CGG CTGGTACTGCAATAA AHA_3404 3829719 - 3830444 + | carbonic anhydrase TERM 4491 3830495 - 3830478 - T 100 -12.7 -4.88228 | opp_overlap 3830478 AGCCAACATGAAAAA GAGGGCC CGTG GGCCCTC TTTTTTTCATTCACC TERM 4492 3830478 - 3830495 + T 100 -12.7 -5.63103 | opp_overlap 3830478 AGCCAACATGAAAAA GAGGGCC CGTG GGCCCTC TTTTTTTCATTCACC AHA_3405 3831427 - 3830519 - | indigoidine synthase A like protein AHA_3406 3832356 - 3831421 - | PfkB family kinase TERM 4493 3832629 - 3832609 - R 100 -13.3 -5.24129 | overlap 3832622 CTTGCGCACAAAAAA TCACCGGGC AAA ACCCGGTGA CAGGAAAACGGTTTT AHA_3407 3833170 - 3832658 - | nitrite reductase [NAD(P)H] large subunit nirB-1 3835803 - 3833218 - | nitrite reductase [NAD(P)H], large subunit TERM 4494 3834025 - 3834052 + g 76 -8.4 -4.14392 | gap 1, overlap 3834028 CTCCCCGCCCGGAAT GCGCGGCACC-AC CGA GTAGGTGCCGTCC TTTTGCAGGTTGGCG AHA_3409 3836650 - 3835829 - | nitrate transport ATP-binding protein NrtC AHA_3410 3837626 - 3836682 - | nitrate transporter component AHA_3411 3839140 - 3837641 - | ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component TERM 4495 3839073 - 3839099 + g 100 -16.6 -3.96449 | opp_overlap 3839073 GACGACCAAAAAAAA GCCCCACCGATC CGG GATCGGTGAGGC TTCTTTGCCCTGTTG TERM 4496 3839099 - 3839073 - G 100 -18.8 -5.88471 | opp_overlap 3839073 GACGACCAAAAAAAA GCCCCACCGATC CGG GATCGGTGAGGC TTCTTTGCCCTGTTG AHA_3412 3840021 - 3839437 - | response regulator NasT, putative TERM 4497 3840003 - 3839985 - G 75 -11.6 -3.56092 | overlap 3839986 TCAGCAGGCGGGAAA CGGGGCCC GCG GGGCCCCC TGAAGTGAGAATGGT TERM 4498 3840002 - 3839986 - G 78 -15.1 -2.73441 | overlap 3839985 CAGCAGGCGGGAAAC GGGGCCC GCG GGGCCCC CTGAAGTGAGAATGG TERM 4499 3840180 - 3840154 - R 71 -6.4 -4.24204 | overlap 3840155 GAGGTAGAGGGAAAA CGGCGGCTCAGG CCA CCCGATCCAGCG CCTGTCCCAGCAGGC cobA 3840919 - 3840161 - | uroporphyrin-III C-methyltransferase AHA_3414 3843725 - 3841089 - | nitrate reductase TERM 4500 3843789 - 3843817 + H 82 -11.5 -3.87815 | opp_overlap 3843790, overlap 3843790 ATGGCCCATAAAAAA AGCGCCCGCCCCC GCT GGGGACGGACGCC TTTGTCCGGATAAGC TERM 4501 3843790 - 3843816 + H 86 -15 -2.92475 | opp_overlap 3843790, overlap 3843789 TGGCCCATAAAAAAA GCGCCCGCCCCC GCT GGGGACGGACGC CTTTGTCCGGATAAG TERM 4502 3843816 - 3843790 - H 100 -19.4 -5.60993 | opp_overlap 3843790 3843789 TGGCCCATAAAAAAA GCGCCCGCCCCC GCT GGGGACGGACGC CTTTGTCCGGATAAG AHA_3415 3844029 - 3844535 + | 23S rRNA methyltransferase AHA_3416 3844525 - 3844641 + | RNA methyltransferase AHA_3417 3845541 - 3844801 - | hypothetical protein AHA_3418 3845728 - 3846159 + | universal stress protein TERM 4503 3846185 - 3846202 + T 100 -12.7 -5.33026 | opp_overlap 3846185 AGACTCACTGCAAAA GGCCAGC ATTC GCTGGCC TTTTTATTTGGGTTC TERM 4504 3846202 - 3846185 - T 95 -12.7 -4.15006 | opp_overlap 3846185 AGACTCACTGCAAAA GGCCAGC ATTC GCTGGCC TTTTTATTTGGGTTC AHA_3419 3846864 - 3846229 - | hypothetical protein TERM 4505 3846993 - 3846976 - R 100 -11.3 -5.88061 | opp_overlap 3846976 AAAAAAGCAAAAAAA TGCCGAC CTGA GTCGGCA TATTCACAGAGGACC TERM 4506 3846976 - 3846993 + r 72 -11.3 -3.01712 | opp_overlap 3846976 AAAAAAGCAAAAAAA TGCCGAC CTGA GTCGGCA TATTCACAGAGGACC proA 3848271 - 3847018 - | gamma-glutamyl phosphate reductase proB 3849467 - 3848364 - | gamma-glutamyl kinase TERM 4507 3849619 - 3849587 - R 100 -23.5 -4.53349 | CAAGCAGCAAAGAAA CGCCCCGCCAGCC GATGGGT GGCTGGCGGGGCG GCGGGTCATCAGGCG crl 3850020 - 3849628 - | DNA-binding transcriptional regulator Crl frsA 3851350 - 3850082 - | fermentation/respiration switch protein TERM 4508 3851264 - 3851294 + g 86 -6.8 -5.0133 | CTCCGCGACCGGGCT GGAATTGGAGACTT CAG AGGTCTCCAGCACC TTTTTTACCCGGGTA TERM 4509 3851452 - 3851430 - R 100 -14.9 -5.67063 | TGCACCACAAAAAAA CAGGGCTCC ATATA GGAGCCCTG TGAAGCTGATTCGCT gpt 3851937 - 3851470 - | xanthine-guanine phosphoribosyltransferase TERM 4510 3852003 - 3851986 - R 70 -6.9 -4.1964 | opp_overlap 3851985 3851981 3851980 3851988 CTTAAGACTTGAAAA CCCGTGC AGAC GCACGTG ATTTCGTTAATGCTG TERM 4511 3852300 - 3852336 + r 74 -6.7 -4.24204 | gap 2, opp_overlap 3852300 3852302, overlap 3852302 CAGCAGATAAAAAAA TAGCAGG-GGG-GAGGA TGGAT TCCTCACTCGCCTGCTG TTTTCGATCTGCCTG TERM 4512 3852336 - 3852300 - R 87 -2.3 -5.74122 | gap 2, opp_overlap 3852300 3852302, overlap 3852302 CAGCAGATAAAAAAA TAGCAGG-G-GGGAGGA TGGAT TCCTCACTCGCCTGCTG TTTTCGATCTGCCTG AHA_3425 3852487 - 3852374 - | hypothetical protein TERM 4513 3852646 - 3852665 + H 90 -5.8 -5.20781 | CATAAACTCAATATT TTTGTGAT GCGA GTCACAAA TTTTCTTTTGTGCTG TERM 4514 3853046 - 3853034 - g 85 -10.5 -4.27441 | ATCATCATCAAGAAA CCGGC CAC GCCGG GGATGGAAAACCGCA pepD 3852857 - 3854308 + | aminoacyl-histidine dipeptidase TERM 4515 3854342 - 3854362 + F 100 -12.6 -5.48825 | opp_overlap 3854342 3854344 ACCGGCCACACCACA TACCCCGC CAGGT GCGGGGTA TTTTTTTGCCTGCTC TERM 4516 3854362 - 3854342 - f 76 -12.6 -2.8547 | opp_overlap 3854342, overlap 3854344 ACCGGCCACACCACA TACCCCGC CAGGT GCGGGGTA TTTTTTTGCCTGCTC AHA_3427 3854650 - 3854769 + | hypothetical protein TERM 4517 3854942 - 3854925 - T 83 -12.7 -3.20227 | opp_overlap 3854925, overlap 3854923 CTCCAACCATGAAGA TGGGGCC CGCA GGCCCCA TTTTTTATTCGCTGT TERM 4518 3854925 - 3854942 + T 100 -12.7 -5.49234 | opp_overlap 3854925 3854923 CTCCAACCATGAAGA TGGGGCC CGCA GGCCCCA TTTTTTATTCGCTGT AHA_3428 3855995 - 3854994 - | oligopeptide transport ATP-binding protein AppF AHA_3429 3857035 - 3855992 - | oligopeptide transport ATP-binding protein OppD AHA_3430 3858878 - 3857061 - | oligopeptide-binding protein OppA TERM 4519 3858010 - 3858020 + g 72 -2.4 -4.72272 | CCCTGCTTGTATTCG GGGG TAA CCGC TTTTTCATGCCACCA AHA_3431 3859998 - 3858961 - | inner membrane ABC transporter permease protein YejE AHA_3432 3861026 - 3860001 - | oligopeptide transport system permease protein OppB TERM 4520 3861057 - 3861081 + H 71 -11.4 -2.93901 | overlap 3861074 TTGTTGTTCTTTTAT GGCCAGTCAC ATCCG GTGACGGGCC TGTCCTTCCTGGCAT TERM 4521 3861192 - 3861178 - H 71 -10 -3.50422 | opp_overlap 3861178 3861177, overlap 3861174 3861188 ATCAAGTAGAACGAA GGGCAT GAC ATGCCC CTTTGGCAAACCGTG TERM 4522 3861790 - 3861778 - g 76 -7.7 -4.26076 | opp_overlap 3861789, overlap 3861766 CGATGCTTAGGAAAA GCAGA CTC TCTGC TGCCGTAGCGTTTGC AHA_3433 3861765 - 3864320 + | outer membrane protein TERM 4523 3864372 - 3864343 - f 100 -13.5 -4.12532 | opp_overlap 3864348, overlap 3864344 3864348 CCGTTGAGATATAAA CCCAAGCCGGCCC GGTC GGGCCGGCTTTGC CCAACGTCCAAGGAA TERM 4524 3864371 - 3864344 - f 100 -17 -3.07198 | opp_overlap 3864348, overlap 3864343 3864348 CGTTGAGATATAAAC CCAAGCCGGCCC GGTC GGGCCGGCTTTG CCCAACGTCCAAGGA TERM 4525 3864348 - 3864367 + F 100 -16.4 -3.53811 | opp_overlap 3864344 3864343 3864348 GAGATATAAACCCAA GCCGGCCC GGTC GGGCCGGC TTTGCCCAACGTCCA TERM 4526 3864367 - 3864348 - f 100 -16.4 -3.36766 | opp_overlap 3864348, overlap 3864344 3864343 GAGATATAAACCCAA GCCGGCCC GGTC GGGCCGGC TTTGCCCAACGTCCA AHA_3434 3864431 - 3865195 + | TonB system biopolymer transport component TERM 4527 3865359 - 3865341 - g 70 -10.2 -3.65224 | opp_overlap 3865344, overlap 3865327 3865344 ATCCCAGCTCAACAA GGAGCGGG AAG CCCGCTTC CTGGCCGACAAGAAC AHA_3435 3865192 - 3866565 + | hypothetical protein TERM 4528 3866632 - 3866651 + G 71 -10.7 -3.44284 | overlap 3866630 GTTTCTGGGATTGGG GGGCGAC GTACTG GTCGCCC TGTTCTTCCTGACCC AHA_3436 3866576 - 3867103 + | TonB system transport protein ExbB2 AHA_3437 3867171 - 3867578 + | biopolymer transport exbD2 protein AHA_3438 3867712 - 3868230 + | periplasmic protein TonB2 TERM 4529 3869390 - 3869361 - g 73 -2.8 -4.77036 | gap 1, opp_overlap 3869369, overlap 3869366 3869369 TTTGAGCAGCAAAAA CCGAA-GGAGGCG CTCTC CGCCTTCACTCAG GCTGCCCAGAACGGC AHA_3439 3868242 - 3869477 + | TPR repeat-containing protein TERM 4530 3869573 - 3869529 - T 72 -11.3 -3.06796 | overlap 3869534 CGGCATGGCACGCAA TGACACCCGGCAGGACGGGCA CCC TCCCCGCCCTGCCGATCAGCA ACAAGGGGGTCACCC TERM 4531 3869568 - 3869534 - T 86 -14.2 -2.92192 | overlap 3869529 TGGCACGCAATGACA CCCGGCAGGACGGGCA CCC TCCCCGCCCTGCCGAT CAGCAACAAGGGGGT TERM 4532 3869612 - 3869631 + T 100 -11.4 -5.49569 | GCCTTGGTGGCAATT GGCCGCTC CCCG GAGCGGTC TTTTTTATGTTCCTA TERM 4533 3869691 - 3869672 - T 100 -13.6 -5.60993 | opp_overlap 3869664 3869672 CCCGCCATAAAAAAA TCCGGAGC CTGG GCTCCGGA TTGGGTCATTGCCTT TERM 4534 3869672 - 3869691 + T 84 -13.6 -3.13908 | opp_overlap 3869672, overlap 3869664 CCCGCCATAAAAAAA TCCGGAGC CTGG GCTCCGGA TTGGGTCATTGCCTT AHA_3440 3872904 - 3869902 - | chitodextrinase TERM 4535 3872679 - 3872630 - G 74 -12 -3.53012 | gap 1 GCCCCCTCGTTGAAA CTGGCGCCGGCAGCCGGCG-AGC TGACG GCTACGCCGAGTGCCGGGGGCGG CACGTCCCCACCATA TERM 4536 3874211 - 3874179 - g 73 -11.2 -3.59979 | opp_overlap 3874182 GCCGCCGACGGTAAA CTGCCCTGGCTGCC GGCCT GGGAGCCGGAGCAG GGTTACCTGCGCATC AHA_3441 3873435 - 3875579 + | nuclease TERM 4537 3875626 - 3875599 - T 76 -12.8 -2.84051 | opp_overlap 3875604, overlap 3875604 CCATCGCCATCAAAC CAAAAGCCCGCA GCGA TGCGGGCTTTTT ATCGGCCGGCTGGCA TERM 4538 3875621 - 3875604 - T 100 -12.7 -4.58773 | opp_overlap 3875604, overlap 3875599 GCCATCAAACCAAAA GCCCGCA GCGA TGCGGGC TTTTTATCGGCCGGC TERM 4539 3875604 - 3875621 + T 100 -12.7 -4.82901 | opp_overlap 3875604 3875599 GCCATCAAACCAAAA GCCCGCA GCGA TGCGGGC TTTTTATCGGCCGGC TERM 4540 3875666 - 3875696 + T 100 -18.4 -3.02166 | opp_overlap 3875671, overlap 3875671 AACGGAGCGCAAAAC AAAAAGGCCACCGC AGT GCGGTGGCCTTTTC TACTTTCATTACGAA TERM 4541 3875691 - 3875671 - T 100 -18.3 -5.46706 | opp_overlap 3875671 3875666 AGCGCAAAACAAAAA GGCCACCGC AGT GCGGTGGCC TTTTCTACTTTCATT TERM 4542 3875671 - 3875691 + T 100 -18.3 -4.64076 | opp_overlap 3875671, overlap 3875666 AGCGCAAAACAAAAA GGCCACCGC AGT GCGGTGGCC TTTTCTACTTTCATT TERM 4543 3876455 - 3876441 - T 70 -5.6 -4.4009 | overlap 3876442 3876443 TTTTATGTCACAAAA CCGGCC TTT GGCCAA AAACAAAGGGCCCCC TERM 4544 3876482 - 3876463 - T 100 -12.8 -4.85782 | opp_overlap 3876463 TTGGCCAAAAACAAA GGGCCCCC GTAC GGGAGCCC TTTCTCAAGCACTGG TERM 4545 3876463 - 3876482 + T 80 -10.6 -3.86346 | opp_overlap 3876463 TTGGCCAAAAACAAA GGGCCCCC GTAC GGGAGCCC TTTCTCAAGCACTGG gltX 3877920 - 3876505 - | glutamyl-tRNA synthetase TERM 4546 3876891 - 3876925 + g 74 -15 -2.56271 | opp_overlap 3876896 3876899, overlap 3876890 3876889 CGGCCAGCAGGGTCA CCACATCAGCCAGGGC CGG GCCCTTGCTGGTGTCG ATCTTCTGATCGGCC TERM 4547 3880240 - 3880215 - g 77 -12.5 -3.64236 | gap 1, opp_overlap 3880230, overlap 3880208 3880207 ACCGAAACGGCCAAA GCCAGCCAGGCG TTG CGCCAGGC-GGC CGAGCGTTTACAGCA AHA_3448 3878112 - 3880283 + | methyl-accepting chemotaxis transducer TERM 4548 3880298 - 3880325 + F 77 -11.2 -3.59979 | overlap 3880299 ATAATTTTCCACCTC AGGACTCTCCCC CTCG GGGGCGAGTCCG TTTACCATAGGCACG TERM 4549 3880299 - 3880324 + F 83 -14.7 -2.75844 | overlap 3880298 TAATTTTCCACCTCA GGACTCTCCCC CTCG GGGGCGAGTCC GTTTACCATAGGCAC AHA_3449 3880382 - 3881050 + | opacity-associated protein A TERM 4550 3881076 - 3881056 - f 100 -14 -4.12043 | opp_overlap 3881056 CAAGGAATGAAACAA CGGGAGGC CTGGT GCCTCCCG TTTTTTTGACCTGAA TERM 4551 3881056 - 3881076 + F 100 -14 -5.44119 | opp_overlap 3881056 CAAGGAATGAAACAA CGGGAGGC CTGGT GCCTCCCG TTTTTTTGACCTGAA AHA_3450 3881323 - 3881532 + | hypothetical protein TERM 4552 3881551 - 3881574 + T 100 -11.8 -5.40072 | gap 1 ACGCCAGTGAGCCTG TAGGAGGAGCC ATC GGC-CCTCCTA TTTTTTTGCCCACCA orn 3883353 - 3882808 - | oligoribonuclease TERM 4553 3884085 - 3884043 - gH 72 -12.1 -2.77043 | gap 1, overlap 3884042 TCGATGAGCTGAAAG CCGCCCTGACCGAC-AAGAT CAGC ATCTTCGTCGGCCAGTCCGG GGTCGGCAAGTCGTC rsgA 3883400 - 3884479 + | ribosome-associated GTPase psd 3884385 - 3885380 + | phosphatidylserine decarboxylase AHA_3462 3885377 - 3885628 + | hypothetical protein TERM 4554 3885682 - 3885670 - g 91 -3.4 -5.44119 | overlap 3885677 3885679 CCTACGGCAAAAAAA CCAA AGAGA TTGG CTACGCCAACGACAA AHA_3463 3885633 - 3885884 + | hypothetical protein AHA_3464 3885887 - 3886285 + | hypothetical protein TERM 4555 3886304 - 3886324 + T 100 -19.7 -5.28176 | GGCAACCTTCTGCAA GCCCCCGGC CCC GCCGGGGGC TTTTTTATGCATGCC TERM 4556 3886378 - 3886357 - T 100 -17.3 -5.24129 | GCGCCCCATAAAAAA GCCGCACCC GAGA GGGTGCGGC AAACGGCAGGCAGGG AHA_3465 3886967 - 3886398 - | hypothetical protein AHA_3466 3887444 - 3887010 - | carboxymuconolactone decarboxylase family protein TERM 4557 3887792 - 3887812 + G 73 -12.5 -3.18582 | GGCGAGTACCGCTAT CAGGGGCCG CTG CGGCCGCTG TTGCTGGATGCCCTG TERM 4558 3888106 - 3888136 + G 70 -10.2 -3.65832 | opp_overlap 3888104, overlap 3888105 GAGCGTGGATGAACT GGCGGCGCTGGCCG CCA TGTCCCGCGCCACC TATTTTCGCCACTTT AHA_3467 3887567 - 3888370 + | AraC family transcriptional regulator TERM 4559 3888407 - 3888388 - T 100 -13.6 -5.38054 | opp_overlap 3888388 GCCCACAAACAAAAA CCCCGTTG CAGG CAACGGGG TTTTTGCTGGCACTC TERM 4560 3888388 - 3888407 + T 100 -13.6 -4.72986 | opp_overlap 3888388 GCCCACAAACAAAAA CCCCGTTG CAGG CAACGGGG TTTTTGCTGGCACTC AHA_3468 3888889 - 3888431 - | hypothetical protein AHA_3469 3889097 - 3891070 + | sensory box protein TERM 4561 3891108 - 3891079 - T 100 -20.9 -3.21912 | opp_overlap 3891079, overlap 3891082 3891085 GCTGTAAGCCAGCAA CAACAAGGCCACC CGAG GGTGGCCTTGTTG TTTTTGCAACGCGTG TERM 4562 3891079 - 3891108 + T 100 -20.9 -4.57073 | opp_overlap 3891079 3891082 3891085 GCTGTAAGCCAGCAA CAACAAGGCCACC CGAG GGTGGCCTTGTTG TTTTTGCAACGCGTG TERM 4563 3891105 - 3891082 - T 100 -16.8 -3.75105 | opp_overlap 3891079, overlap 3891079 3891085 GTAAGCCAGCAACAA CAAGGCCACC CGAG GGTGGCCTTG TTGTTTTTGCAACGC TERM 4564 3891102 - 3891085 - T 93 -12.7 -3.99775 | opp_overlap 3891079, overlap 3891082 3891079 AGCCAGCAACAACAA GGCCACC CGAG GGTGGCC TTGTTGTTTTTGCAA AHA_3470 3891645 - 3891139 - | hypothetical protein TERM 4565 3891861 - 3891879 + H 83 -5.9 -4.95155 | opp_overlap 3891860 3891862, overlap 3891862 TGCCCGTACGGAAAG AGGAGCC AGCCA GGCTCCC TTTTTATCATGTGAA TERM 4566 3891947 - 3891928 - g 71 -5 -4.48073 | CTAAAAAAACAATAA TGAGCC TGCTTGTC GGCTCA ACCCTTATGATTGGA AHA_3471 3891909 - 3894185 + | immune inhibitor A TERM 4567 3894204 - 3894220 + T 100 -15.1 -5.24989 | opp_overlap 3894194 CGACAGTTGTGAGCA GGGGGCC TCA GGCCCCC TTTTTTCATCTGTCG TERM 4568 3894554 - 3894536 - T 100 -16 -4.24404 | opp_overlap 3894536 AGCCAAATTTGAAAA GCCCGCTC ATC GAGCGGGC TTTTTTCATTTCGGT TERM 4569 3894536 - 3894554 + T 100 -16 -5.38497 | opp_overlap 3894536 AGCCAAATTTGAAAA GCCCGCTC ATC GAGCGGGC TTTTTTCATTTCGGT AHA_3474 3894703 - 3894569 - | hypothetical protein TERM 4570 3894653 - 3894664 + g 83 -7.2 -4.64992 | CTGCAGCACACCTTC CGGG TTTA CCCG TTTCTCTTTTTTGCG TERM 4571 3894882 - 3894858 - H 86 -10.7 -4.16921 | TAACAATTTGGAAAA CCGGCGTGA CCCGTTC CCACGCCGG GGCTATGATGAGGCC TERM 4572 3895342 - 3895374 + G 72 -4.1 -4.58395 | gap 1 GCTGAGCCCGGGGCG CCCCTGGAGC-CTG CTCGGC CAGAGCTTCGGCGG TTTTTGCAGCCTCAC AHA_3475 3894929 - 3896206 + | proline iminopeptidase AHA_3476 3896306 - 3899866 + | ABC transporter, ATP-binding protein TERM 4573 3899908 - 3899877 - T 95 -13 -4.09685 | opp_overlap 3899880 3899883 3899904, overlap 3899880 3899883 TGTGAGGGCTGAAAA TGACAAGGGCTGCC CACG GGCAGCCCTTGTTG CTTGAGGAGGGCCTC TERM 4574 3899880 - 3899905 + T 100 -19.1 -3.33696 | opp_overlap 3899877 3899880 3899883, overlap 3899883 3899904 GAGGGCTGAAAATGA CAAGGGCTGCC CACG GGCAGCCCTTG TTGCTTGAGGAGGGC TERM 4575 3899905 - 3899880 - T 100 -19.1 -3.08508 | opp_overlap 3899880 3899883 3899904, overlap 3899877 3899883 GAGGGCTGAAAATGA CAAGGGCTGCC CACG GGCAGCCCTTG TTGCTTGAGGAGGGC TERM 4576 3899883 - 3899902 + T 100 -15 -3.81146 | opp_overlap 3899880 3899877 3899883, overlap 3899880 GGCTGAAAATGACAA GGGCTGCC CACG GGCAGCCC TTGTTGCTTGAGGAG TERM 4577 3899902 - 3899883 - T 95 -15 -3.68359 | opp_overlap 3899883 3899880, overlap 3899880 3899877 GGCTGAAAATGACAA GGGCTGCC CACG GGCAGCCC TTGTTGCTTGAGGAG AHA_3477 3900164 - 3899922 - | hypothetical protein AHA_3478 3901421 - 3900246 - | extracellular alkaline serine protease TERM 4578 3900935 - 3900969 + g 76 -12.8 -3.42996 | CGTTGCCGCCCACGG CGGCGATGGTGCCTGC CAC GTGGGTGCCATGGCCG TTCTCGTCGCTGCTC TERM 4579 3901499 - 3901522 + r 77 -8 -4.18802 | opp_overlap 3901501, overlap 3901501 CCGAGCGGGTACAAA AAGGCCGGAC ATGG GGCCGGCCTG TTTTGCGATCTGTAT TERM 4580 3901501 - 3901520 + r 76 -10.6 -3.6878 | opp_overlap 3901501, overlap 3901499 GAGCGGGTACAAAAA GGCCGGAC ATGG GGCCGGCC TGTTTTGCGATCTGT TERM 4581 3901520 - 3901501 - R 100 -10.6 -4.83615 | opp_overlap 3901501 3901499 GAGCGGGTACAAAAA GGCCGGAC ATGG GGCCGGCC TGTTTTGCGATCTGT AHA_3479 3902833 - 3901541 - | putative thiosulfate sulfurtransferase TERM 4582 3901673 - 3901661 - G 71 -9.1 -3.79906 | opp_overlap 3901665 CCAGGCGTAGAAGAA CGCCT CGG AGGCG CGCCAGCCGGTGCCG TERM 4583 3902881 - 3902870 - R 74 -2.2 -5.11033 | overlap 3902871 3902872 3902874 GACAAGGTTAAAAAA TGGA GCGG CCCA GACGCTCGGCCAGCA AHA_3480 3903794 - 3902862 - | thermolabile glutaminase TERM 4584 3903829 - 3903847 + r 76 -10.2 -3.66058 | opp_overlap 3903830, overlap 3903830 TCACCACCGACAAAA ATCCCGCC AGC GGCGGGAC TTGTCTATCTGCTGT TERM 4585 3903846 - 3903830 - R 100 -13.7 -4.88736 | opp_overlap 3903829 3903830 CACCACCGACAAAAA TCCCGCC AGC GGCGGGA CTTGTCTATCTGCTG TERM 4586 3903830 - 3903846 + r 79 -13.7 -2.78912 | opp_overlap 3903830, overlap 3903829 CACCACCGACAAAAA TCCCGCC AGC GGCGGGA CTTGTCTATCTGCTG AHA_3481 3904239 - 3903907 - | hypothetical protein trmB 3904949 - 3904254 - | tRNA (guanine-N(7)-)-methyltransferase TERM 4587 3904289 - 3904310 + g 71 -9.4 -3.71321 | TCAGATCCCACACCC CGTGGCCG AGACGG TGGCCACG TTGTTCGAATTTGGT TERM 4588 3906318 - 3906359 + G 76 -13.7 -3.14132 | opp_overlap 3906326 3906329 CTGTTCCCGGGCCGG GTGCAACAGCAGCTCGGTG CCAA CACCGAGCTGATGATCCGC TTCCTCAAGGAGCCG TERM 4589 3906351 - 3906326 - g 71 -13.3 -3.01712 | opp_overlap 3906318, overlap 3906329 GGGCCGGGTGCAACA GCAGCTCGGTG CCAA CACCGAGCTGA TGATCCGCTTCCTCA TERM 4590 3906348 - 3906329 - g 72 -13.6 -2.73875 | opp_overlap 3906318, overlap 3906326 CCGGGTGCAACAGCA GCTCGGTG CCAA CACCGAGC TGATGATCCGCTTCC AHA_3483 3905316 - 3906383 + | aminopeptidase Y TERM 4591 3906437 - 3906457 + F 100 -12.6 -5.35222 | opp_overlap 3906436 3906435 3906434 CGACCGATAAAATTC GGGCAGGT GCCAA ACCTGCCC TTTTTTATCGATTTT AHA_3484 3906566 - 3907747 + | aminotransferase, classes I and II TERM 4592 3907769 - 3907788 + T 100 -13.6 -5.60993 | opp_overlap 3907769 TCGGGGCGAAAAAAA CCAGCGAC CTCG GTCGCTGG TTTTTTTATGCGCGC TERM 4593 3907788 - 3907769 - T 100 -13.6 -5.40072 | opp_overlap 3907769 TCGGGGCGAAAAAAA CCAGCGAC CTCG GTCGCTGG TTTTTTTATGCGCGC AHA_3485 3909344 - 3907812 - | EAL domain-containing protein AHA_3486 3909647 - 3910552 + | hypothetical protein TERM 4594 3910616 - 3910570 - T 100 -22.4 -3.09516 | opp_overlap 3910575 3910581, overlap 3910581 CGGCTCATCAGCCAA CCGGATGACAATCAGCCCGGCC AAT GGCCGGGCTGATTGTCATTGTG CCTTGCGGCATCCGC TERM 4595 3910575 - 3910611 + T 100 -29.7 -3.41878 | opp_overlap 3910570 3910581, overlap 3910581 CATCAGCCAACCGGA TGACAATCAGCCCGGCC AAT GGCCGGGCTGATTGTCA TTGTGCCTTGCGGCA TERM 4596 3910581 - 3910605 + T 100 -21.5 -3.57441 | opp_overlap 3910581 3910570, overlap 3910575 CCAACCGGATGACAA TCAGCCCGGCC AAT GGCCGGGCTGA TTGTCATTGTGCCTT TERM 4597 3910605 - 3910581 - T 100 -21.5 -3.42574 | opp_overlap 3910575 3910581, overlap 3910570 CCAACCGGATGACAA TCAGCCCGGCC AAT GGCCGGGCTGA TTGTCATTGTGCCTT AHA_3487 3913093 - 3910646 - | ABC-type transport system, permease component AHA_3488 3913815 - 3913090 - | ABC transporter, ATP-binding protein TERM 4598 3913569 - 3913543 - GH 74 -7.2 -4.20368 | GGACTGGAACACAAA GCCCACCTGC TCGGCCC GCAGCCGGGC ACGCCCCTCCTCGTC TERM 4599 3913680 - 3913703 + gH 74 -10.9 -3.57615 | TGGACTTGCCGGAGC CGGAGGCGC CGACCA GCGCCACCG TTTCGCCGCTATTGA AHA_3489 3913814 - 3914413 + | acyl-CoA thioesterase I TERM 4600 3914454 - 3914489 + Tr 72 -12 -2.69647 | opp_overlap 3914464, overlap 3914458 3914462 3914464 TTCCGGGCTCCAACC CCAATAAAAATCCCGC CAAG GCGGGATGTTTATTGC TCCTGTCTCAGCGTT TERM 4601 3914458 - 3914485 + Tr 74 -11.4 -3.26545 | opp_overlap 3914464, overlap 3914454 3914462 3914464 GGGCTCCAACCCCAA TAAAAATCCCGC CAAG GCGGGATGTTTA TTGCTCCTGTCTCAG TERM 4602 3914462 - 3914481 + Tr 77 -7.8 -4.28111 | opp_overlap 3914464, overlap 3914458 3914454 3914464 TCCAACCCCAATAAA AATCCCGC CAAG GCGGGATG TTTATTGCTCCTGTC TERM 4603 3914479 - 3914464 - TR 100 -10.4 -5.10208 | opp_overlap 3914464 3914462 3914458 3914454 CAACCCCAATAAAAA TCCCGC CAAG GCGGGA TGTTTATTGCTCCTG TERM 4604 3914464 - 3914479 + Tr 76 -10.4 -3.73445 | opp_overlap 3914464, overlap 3914462 3914458 3914454 CAACCCCAATAAAAA TCCCGC CAAG GCGGGA TGTTTATTGCTCCTG AHA_3490 3915441 - 3914497 - | chemotaxis protein CheV TERM 4605 3915587 - 3915560 - R 100 -9.1 -5.94713 | gap 1, opp_overlap 3915562 3915565, overlap 3915561 3915562 ACTTGATAAAAAAAA GCGAGACCCGGC TCGCG GCCGGG-CTCTC TTCAAGATTGTCAGT TERM 4606 3915588 - 3915561 - R 74 -7.7 -4.15201 | gap 1, opp_overlap 3915562 3915565, overlap 3915560 3915562 CTTGATAAAAAAAAG CGAGA-CCCGGC TCGCG GCCGGGCTCTCT TCAAGATTGTCAGTA TERM 4607 3915587 - 3915562 - R 72 -11.2 -3.08036 | gap 1, opp_overlap 3915562 3915565, overlap 3915560 3915561 TTGATAAAAAAAAGC GAGA-CCCGGC TCGCG GCCGGGCTCTC TTCAAGATTGTCAGT TERM 4608 3915562 - 3915585 + r 72 -11 -3.07233 | gap 1, opp_overlap 3915560 3915562 3915561, overlap 3915565 TTGATAAAAAAAAGC GAGACCCGGCT CGC GGCCGGG-CTC TCTTCAAGATTGTCA TERM 4609 3915714 - 3915695 - R 100 -13.6 -5.74122 | opp_overlap 3915695 CATGACATAAAAAAA GCGGCAGA TGAA TCTGCCGC TTTTTGCCTGGGGTC TERM 4610 3915695 - 3915714 + r 100 -13.6 -4.66609 | opp_overlap 3915695 CATGACATAAAAAAA GCGGCAGA TGAA TCTGCCGC TTTTTGCCTGGGGTC AHA_3491 3930880 - 3915737 - | hypothetical protein AHA_3492 3932770 - 3931109 - | hypothetical protein AHA_3493 3933524 - 3932889 - | hemolysin III TERM 4611 3932935 - 3932919 - G 71 -8.7 -3.91473 | ATAAATGGCCATAAA GTGACAG ACG CTGCCAC CCAGTACGAACAGAT TERM 4612 3934704 - 3934672 - g 71 -8.4 -3.87815 | gap 1, opp_overlap 3934674 CTGGATGGCCACAAA CAGC-TGCTGGTGCC GCTC GGTACCGGCATGCTG CTCTGCCGCCAGCCG AHA_3494 3933748 - 3935253 + | group II decarboxylase ispZ 3935358 - 3935909 + | intracellular septation protein A AHA_3496 3935935 - 3936231 + | YciI-like protein TERM 4613 3936289 - 3936259 - T 100 -22.7 -6.04953 | opp_overlap 3936259 AGAGAAATAAAAAAA GGCCGGACTGGCA GTTCA TGCCAGTCCGGCC TTTTTCTATCCCGAT TERM 4614 3936259 - 3936289 + T 100 -22.7 -4.9725 | opp_overlap 3936259 AGAGAAATAAAAAAA GGCCGGACTGGCA GTTCA TGCCAGTCCGGCC TTTTTCTATCCCGAT cysQ-2 3937104 - 3936313 - | 3'(2'),5'-bisphosphate nucleotidase AHA_3498 3937251 - 3937571 + | ComEA protein TERM 4615 3937595 - 3937617 + F 100 -13.4 -5.09204 | opp_overlap 3937597, overlap 3937597 TACCCCTCCCCTCAT AAGGGCAGCC TGT GGCTGCCCTA TTTTTCTTCGGGTAT TERM 4616 3937615 - 3937597 - f 100 -16 -3.28712 | opp_overlap 3937595 3937597 CCCCTCCCCTCATAA GGGCAGCC TGT GGCTGCCC TATTTTTCTTCGGGT TERM 4617 3937597 - 3937615 + F 100 -16 -4.16909 | opp_overlap 3937597, overlap 3937595 CCCCTCCCCTCATAA GGGCAGCC TGT GGCTGCCC TATTTTTCTTCGGGT galU 3937685 - 3938578 + | UTP-glucose-1-phosphate uridylyltransferase TERM 4618 3938616 - 3938633 + F 100 -11.3 -5.1417 | opp_overlap 3938615 3938614 ATGGAATAAAACACT GGGCATC ATTC GATGCCC TTTTTCATTTTATAA TERM 4619 3938814 - 3938837 + G 93 -2.4 -5.66989 | opp_overlap 3938810, overlap 3938802 3938815 ATCCGTCCAAAGGGA CCTTTTTAGG TCAC CCTAAAGGGC TTTTTTTGCTCTTTA AHA_3500 3938792 - 3940189 + | dipeptide/tripeptide permease TERM 4620 3940240 - 3940211 - T 100 -22.3 -3.14931 | opp_overlap 3940211 3940215, overlap 3940215 CGGATTGTCTAGCAA CAAAGAGGGCGCC CATG GGCGCCCTCTTTG TATGTGGCCGTCTGA TERM 4621 3940211 - 3940240 + T 100 -22.3 -2.89191 | opp_overlap 3940211 3940215, overlap 3940215 CGGATTGTCTAGCAA CAAAGAGGGCGCC CATG GGCGCCCTCTTTG TATGTGGCCGTCTGA TERM 4622 3940236 - 3940215 - T 100 -17.3 -4.24342 | opp_overlap 3940211 3940215, overlap 3940211 TTGTCTAGCAACAAA GAGGGCGCC CATG GGCGCCCTC TTTGTATGTGGCCGT TERM 4623 3940215 - 3940236 + T 100 -17.3 -4.128 | opp_overlap 3940215 3940211, overlap 3940211 TTGTCTAGCAACAAA GAGGGCGCC CATG GGCGCCCTC TTTGTATGTGGCCGT AHA_3501 3941234 - 3940263 - | response regulator receiver domain-containing protein AHA_3502 3943155 - 3941560 - | hypothetical protein AHA_3503 3941575 - 3942252 + | hypothetical protein AHA_3504 3942322 - 3943176 + | DNA replication protein, putative TERM 4624 3943379 - 3943365 - g 73 -11.4 -3.67597 | GCCTTCACCGAACAA GCCCTG CAG CAGGGC CAGCGGGTCATCGCC AHA_3505 3943305 - 3943940 + | NAD-dependent epimerase/dehydratase family protein TERM 4625 3944000 - 3943979 - T 100 -15.9 -4.9792 | opp_overlap 3943979 CAGCGCATACAAAAA CGGTCAGCC CAAG GGCTGACCG TTTTTCGCTTTACCG TERM 4626 3943979 - 3944000 + T 100 -15.9 -4.81249 | opp_overlap 3943979 CAGCGCATACAAAAA CGGTCAGCC CAAG GGCTGACCG TTTTTCGCTTTACCG AHA_3506 3945247 - 3944051 - | ABC-type multidrug transport system, permease component AHA_3507 3946487 - 3945351 - | ABC-type multidrug transport system, permease component TERM 4627 3945624 - 3945600 - G 74 -10.6 -3.78329 | CCCCATGAAGGCAAA GCCCGGCGCC GTGTA GGCACCGGCC AGCGACAGGGCGCGG AHA_3508 3947491 - 3946487 - | membrane-fusion protein AHA_3509 3948923 - 3947565 - | outer membrane efflux protein TERM 4628 3949236 - 3949222 - H 85 -4.2 -5.14563 | overlap 3949223 CTCCTGACTAAAAAA TGCGTA ATA TACGCC GCCCTAAGCCGATGG AHA_3510 3949262 - 3950227 + | tRNA-dihydrouridine synthase B fis 3950253 - 3950549 + | DNA-binding protein Fis TERM 4629 3950580 - 3950605 + T 100 -17.7 -4.9792 | opp_overlap 3950580 TGCAGTGCAGACGAA GGCGTATCCCA GTGA TGGGATACGCC TTTTTCTATGCCCTC TERM 4630 3950605 - 3950580 - T 100 -17.7 -3.27022 | opp_overlap 3950580 TGCAGTGCAGACGAA GGCGTATCCCA GTGA TGGGATACGCC TTTTTCTATGCCCTC AHA_3512 3951251 - 3950619 - | amino acid transporter LysE TERM 4631 3951062 - 3951038 - G 78 -14.3 -3.04792 | TGATGACGGTGAACA GCTCCGCCGAG GCA CTCAGCAGAGC CGACAGTCCCAGCGC TERM 4632 3951540 - 3951559 + r 100 -15 -4.06786 | opp_overlap 3951540 TCAGGCAATAAAAAA CCCCGCTC AGAT GAGCGGGG TTTCTCGTGTTGGGT TERM 4633 3951559 - 3951540 - R 100 -15 -5.4833 | opp_overlap 3951540 TCAGGCAATAAAAAA CCCCGCTC AGAT GAGCGGGG TTTCTCGTGTTGGGT TERM 4634 3954207 - 3954219 + r 84 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4635 3954705 - 3954735 + r 73 -10.4 -3.40403 | opp_overlap 3954711, overlap 3954708 TTAACCATACAACCC CAAGAAGTGTCGGT GAA ACCGGCACAGCTTG TTGTCGTACAACAAG TERM 4636 3954729 - 3954711 - R 70 -8.8 -3.70081 | opp_overlap 3954708 3954705 ATACAACCCCAAGAA GTGTCGGT GAA ACCGGCAC AGCTTGTTGTCGTAC TERM 4637 3954753 - 3954767 + r 74 -7.2 -4.07687 | opp_overlap 3954753 3954747 3954764 GTCGTACAACAAGGA CCAAAT AAA ATTTGG TTTTCGCCAAGAAGT TERM 4638 3954876 - 3954913 + r 77 -11.5 -3.61398 | opp_overlap 3954881, overlap 3954879 CAGCACAAGGCTGAA GAAAACAGAGTTAAGAA TCAG TTCTTAACTCTGCATTC TTGTTAGCAAGAAGA TERM 4639 3954879 - 3954910 + r 71 -7.4 -3.9461 | opp_overlap 3954881, overlap 3954876 CACAAGGCTGAAGAA AACAGAGTTAAGAA TCAG TTCTTAACTCTGCA TTCTTGTTAGCAAGA TERM 4640 3954908 - 3954881 - R 100 -14.4 -4.65747 | opp_overlap 3954879 3954876 CAAGGCTGAAGAAAA CAGAGTTAAGAA TCAG TTCTTAACTCTG CATTCTTGTTAGCAA TERM 4641 3956807 - 3956821 + r 71 -8.6 -3.80114 | GCTGAATTAACTGCT GCAACT AAA AGTTGC TTTGGTCACTTCATC TERM 4642 3957130 - 3957118 - R 71 -6.2 -4.26461 | opp_overlap 3957117 AGCAACCCAAAAGAA GCCC ATCAA GGGC CCTTTAGCATTACTG TERM 4643 3957208 - 3957193 - R 100 -11.8 -4.73108 | opp_overlap 3957193 GGGACAAAACGAAAA GGGCCC CTTG GGGCCC TTCGATATCACGCGG TERM 4644 3957193 - 3957208 + r 76 -11.8 -3.12351 | opp_overlap 3957193 GGGACAAAACGAAAA GGGCCC CTTG GGGCCC TTCGATATCACGCGG AHA_3517 3957640 - 3957236 - | iron-sulfur cluster insertion protein ErpA TERM 4645 3957477 - 3957497 + g 75 -3.2 -4.91084 | gap 1, overlap 3957478 CCGCCCGTGATGTAC ACCCGCAGC TTGA GCT-CGGGA TTTTCTTCTTCGGTG AHA_3518 3958372 - 3957677 - | hypothetical protein AHA_3519 3959853 - 3958459 - | chloride channel protein TERM 4646 3958729 - 3958705 - G 70 -10.6 -3.66356 | overlap 3958680 3958681 ACCGGCAATGGCAAA GGCGCCGGGC TCGAT GCCCAGCTCC GGGAAGGCCGCATGA TERM 4647 3958990 - 3959007 + g 72 -2.6 -4.72007 | overlap 3958991 CACCAGCGTCCCGAT GGCCAC GAAACG GTGGCG TTTGTTTTGATGCAA TERM 4648 3960717 - 3960729 + G 76 -10.5 -3.86015 | CATGAACTGCATCCC GCCGG TAC CCGGC TTTCTGGAAGGGCTG hemL 3960076 - 3961362 + | glutamate-1-semialdehyde-2,1-aminomutase TERM 4649 3961398 - 3961382 - f 86 -10.8 -4.07568 | opp_overlap 3961382 CCGCTTGTCGCAAAA GGGCCC TTCAC GGGCCC TTTTTTATTGCAGCT TERM 4650 3961382 - 3961398 + F 100 -10.8 -5.45652 | opp_overlap 3961382 CCGCTTGTCGCAAAA GGGCCC TTCAC GGGCCC TTTTTTATTGCAGCT AHA_3521 3961572 - 3962387 + | hypothetical protein AHA_3522 3963350 - 3962448 - | hypothetical protein TERM 4651 3963230 - 3963214 - G 95 -10.1 -4.6635 | opp_overlap 3963228, overlap 3963218 AAATTGGCAACAAAA CCGATGG CCG CCACCGG CCAGAAGGGGGTCGA TERM 4652 3963579 - 3963602 + r 100 -11 -5.5112 | opp_overlap 3963579 GGAAGTAGCCAAAAA GAAGGCCGGT ATGC ACCGACCTTC TTTTTTATTGCTGAC TERM 4653 3963602 - 3963579 - R 100 -13.2 -4.7078 | opp_overlap 3963579 GGAAGTAGCCAAAAA GAAGGCCGGT ATGC ACCGACCTTC TTTTTTATTGCTGAC AHA_3523 3964329 - 3963607 - | PAP2 family protein TERM 4654 3963861 - 3963811 - G 76 -11 -3.78934 | gap 1 GGGCGCCGAGAACAA CGGCACCATCAGCAGCGC-GGTC ACCCCG GCCCAGCGCGGCAGATGGCGCAG GGCAAAGCCGGCGAA TERM 4655 3964395 - 3964378 - H 77 -4.1 -5.04325 | TTTAAAGCATAAAAA GCGTGAC GTGA ATCACAC AAACGAGGGAGGAAA AHA_3524 3964517 - 3965032 + | hypothetical protein TERM 4656 3965066 - 3965094 + T 100 -21.9 -3.61654 | opp_overlap 3965066 3965069 3965073, overlap 3965069 3965073 GCAGGCAGCCGGAAA CAACAAAGGGGCC AGT GGCCCCTTTGTTG TTTCCGGTCGGTGTC TERM 4657 3965094 - 3965066 - T 100 -21.9 -3.57792 | opp_overlap 3965066 3965069 3965073, overlap 3965069 3965073 GCAGGCAGCCGGAAA CAACAAAGGGGCC AGT GGCCCCTTTGTTG TTTCCGGTCGGTGTC TERM 4658 3965069 - 3965091 + T 100 -17.8 -3.94188 | opp_overlap 3965066 3965069 3965073, overlap 3965066 3965073 GGCAGCCGGAAACAA CAAAGGGGCC AGT GGCCCCTTTG TTGTTTCCGGTCGGT TERM 4659 3965091 - 3965069 - T 100 -17.8 -3.92542 | opp_overlap 3965069 3965066 3965073, overlap 3965066 3965073 GGCAGCCGGAAACAA CAAAGGGGCC AGT GGCCCCTTTG TTGTTTCCGGTCGGT TERM 4660 3965073 - 3965087 + T 100 -12.8 -4.57581 | opp_overlap 3965069 3965066 3965073, overlap 3965069 3965066 GCCGGAAACAACAAA GGGGCC AGT GGCCCC TTTGTTGTTTCCGGT TERM 4661 3965087 - 3965073 - T 100 -12.8 -4.56978 | opp_overlap 3965073 3965069 3965066, overlap 3965069 3965066 GCCGGAAACAACAAA GGGGCC AGT GGCCCC TTTGTTGTTTCCGGT AHA_3525 3966688 - 3965108 - | response regulator TERM 4662 3966326 - 3966354 + g 74 -12.5 -3.2699 | gap 1, overlap 3966324 3966331 3966341 3966343 GGCCTGCCCCGGCTG GCC-GGTGCGCA GCACGA TGCGCACCAGGC TGTTGTGCATCTCGT TERM 4663 3966576 - 3966604 + g 76 -10.3 -3.90112 | opp_overlap 3966584, overlap 3966577 TCCGGCTCATCATCG ACGATCAACACCT GCC AGGGGTTGATCGC TTTGGTTACCACGGC TERM 4664 3966577 - 3966603 + g 74 -13.8 -2.93853 | opp_overlap 3966584, overlap 3966576 CCGGCTCATCATCGA CGATCAACACCT GCC AGGGGTTGATCG CTTTGGTTACCACGG AHA_3526 3967684 - 3966803 - | LysR family transcriptional regulator TERM 4665 3967357 - 3967337 - G 76 -12.5 -3.53012 | GCTGGTGCCGGGAAA CTGGTGGCG CAG CGCCCCCAG CATCTCCCGCCACAC AHA_3527 3967841 - 3968305 + | SMR family multidrug efflux pump AHA_3528 3968293 - 3968613 + | SMR family multidrug efflux pump TERM 4666 3968640 - 3968677 + T 100 -24.3 -3.86346 | opp_overlap 3968645 3968648, overlap 3968645 CGCACTGCTCGCCAT GACAAGAAGCCGCCCGG CTAA CCGGGCGGCTTCTTTTC TTTATGGGGCAATGC TERM 4667 3968672 - 3968645 - T 100 -22.8 -3.40403 | opp_overlap 3968640 3968645, overlap 3968648 TGCTCGCCATGACAA GAAGCCGCCCGG CTAA CCGGGCGGCTTC TTTTCTTTATGGGGC TERM 4668 3968645 - 3968672 + T 100 -22.8 -4.99043 | opp_overlap 3968645 3968648, overlap 3968640 TGCTCGCCATGACAA GAAGCCGCCCGG CTAA CCGGGCGGCTTC TTTTCTTTATGGGGC TERM 4669 3968669 - 3968648 - T 100 -18.7 -3.84406 | opp_overlap 3968645 3968640, overlap 3968645 TCGCCATGACAAGAA GCCGCCCGG CTAA CCGGGCGGC TTCTTTTCTTTATGG AHA_3529 3969114 - 3968713 - | glyoxylase I family protein mrcB 3971478 - 3969157 - | penicillin-binding protein 1B hrpB 3974900 - 3971730 - | ATP-dependent helicase HrpB TERM 4670 3972114 - 3972126 + gH 74 -4.8 -4.63527 | overlap 3972102 CTGGCGCAGGATGTC GCTC ATATC GAGC TTTTTCAACTGCTCC TERM 4671 3972854 - 3972844 - GH 71 -8.2 -3.78953 | overlap 3972845 AGCGCCACCAGGAAA GCCG CAT CGGC GACAATCCCTGTCAG TERM 4672 3973001 - 3973059 + gH 72 -11.5 -3.06261 | gap 1 TGGCGCCGAGACTCA CCAGCAGCCGCTGGGCACTGGCGACGGC GGCG GCCGGCGGCA-TGTCCAGCAGCGGCAGC TCTTCGACCTTGGCC AHA_3532 3974322 - 3974861 + | 2'-5' RNA ligase sfsA 3974904 - 3975647 + | sugar fermentation stimulation protein dksA 3975767 - 3976216 + | RNA polymerase-binding protein DksA TERM 4673 3976228 - 3976202 - f 100 -9.5 -4.95957 | gap 1 GAAATCAAGGAAAAA CAGATGGCCGGT TGAT ACCGACC-TCTG GCATAACAGAAAAAA TERM 4674 3976268 - 3976237 - f 71 -10.3 -3.21395 | opp_overlap 3976244, overlap 3976244 ACCTCTGGCATAACA GAAAAAAGGGAGC TCGCGG GCTCCCTTTTTTA TTGAGCTTTTGGCCT TERM 4675 3976261 - 3976244 - f 100 -8.4 -5.5208 | opp_overlap 3976244, overlap 3976237 GCATAACAGAAAAAA GGGAGC TCGCGG GCTCCC TTTTTTATTGAGCTT TERM 4676 3976244 - 3976261 + F 100 -9.1 -5.4756 | opp_overlap 3976244 3976237 GCATAACAGAAAAAA GGGAGCT CGCG GGCTCCC TTTTTTATTGAGCTT TERM 4677 3976511 - 3976531 + G 76 -9 -4.08216 | gap 1, overlap 3976513 ATCCACCGCGGGAGA TG-GCGGGG GCCG CCCCGCTCA TTTTGCAGACGCTGG AHA_3535 3976336 - 3977238 + | glutamyl-Q tRNA(Asp) synthetase AHA_3536 3977560 - 3979059 + | poly(A) polymerase folK-1 3979071 - 3979580 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase panB 3979577 - 3980371 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 4678 3980382 - 3980416 + F 72 -12.1 -2.83164 | gap 1, opp_overlap 3980390 ACTGATCCGATAGCG TGACGAGAGCGGGGGC CTGC GCCCCCGCT-TCGCCC TCTGGTGCTGACTGA TERM 4679 3980409 - 3980390 - f 90 -16.4 -2.79501 | opp_overlap 3980382 GATAGCGTGACGAGA GCGGGGGC CTGC GCCCCCGC TTCGCCCTCTGGTGC panC 3980559 - 3981416 + | pantoate--beta-alanine ligase TERM 4680 3981433 - 3981462 + T 100 -20.9 -3.88787 | opp_overlap 3981436 3981440, overlap 3981436 3981440 CCGCAGCGCCACTGA CAACAAAGCCCGC ATGT GCGGGCTTTGTTG TTTCTGAGCGTGTCC TERM 4681 3981459 - 3981436 - T 100 -16.8 -3.35996 | opp_overlap 3981433 3981436 3981440, overlap 3981440 CAGCGCCACTGACAA CAAAGCCCGC ATGT GCGGGCTTTG TTGTTTCTGAGCGTG TERM 4682 3981436 - 3981459 + T 100 -16.8 -4.07133 | opp_overlap 3981436 3981440, overlap 3981433 3981440 CAGCGCCACTGACAA CAAAGCCCGC ATGT GCGGGCTTTG TTGTTTCTGAGCGTG TERM 4683 3981455 - 3981440 - T 93 -11.8 -4.33417 | opp_overlap 3981436 3981433 3981440, overlap 3981436 GCCACTGACAACAAA GCCCGC ATGT GCGGGC TTTGTTGTTTCTGAG TERM 4684 3981440 - 3981455 + T 100 -11.8 -4.63048 | opp_overlap 3981440 3981436, overlap 3981436 3981433 GCCACTGACAACAAA GCCCGC ATGT GCGGGC TTTGTTGTTTCTGAG AHA_3540 3982008 - 3981481 - | hypothetical protein AHA_3541 3982450 - 3982010 - | methylamine utilization protein-like protein TERM 4685 3982600 - 3982550 - R 87 -13.3 -3.28712 | overlap 3982557 3982558 CCGTCTTCGTCACAA CGAAAAACGGCAGCAGTTTCGCC GCGCT GGCACCACTGCTGCCACTCCTCG GGCGGGCAGTGCAGG TERM 4686 3982593 - 3982557 - R 100 -10.8 -4.93365 | overlap 3982550 3982558 CGTCACAACGAAAAA CGGCAGCAGTTTCGCC GCGCT GGCACCACTGCTGCCA CTCCTCGGGCGGGCA TERM 4687 3982592 - 3982558 - R 81 -12.1 -3.55296 | overlap 3982557 3982550 GTCACAACGAAAAAC GGCAGCAGTTTCGCC GCGCT GGCACCACTGCTGCC ACTCCTCGGGCGGGC AHA_3542 3983534 - 3982752 - | activator of (R)-2-hydroxyglutaryl-CoA dehydratase TERM 4688 3983159 - 3983142 - G 71 -8.3 -3.88291 | opp_overlap 3983135 3983156 GATCACCTCGAGAAA GCGGCCG GTAC CGGCGGC GCACTTGTCGTTCAT AHA_3543 3984620 - 3983544 - | 2-hydroxyglutaryl-CoA dehydratase, D-component TERM 4689 3984919 - 3984900 - R 100 -15 -5.41143 | opp_overlap 3984900 GAGGCGGCAAAAAAA CGGGCACC CCAG GGTGCCCG TTGCATTGCATCAGT TERM 4690 3984900 - 3984919 + r 95 -15 -3.19371 | opp_overlap 3984900 GAGGCGGCAAAAAAA CGGGCACC CCAG GGTGCCCG TTGCATTGCATCAGT AHA_3544 3985703 - 3984930 - | ABC transporter, permease protein AHA_3545 3986617 - 3985700 - | ABC transporter, ATP-binding protein TERM 4691 3986674 - 3986659 - R 100 -11.8 -4.60797 | TCTCGAGACAGAAAA GGCGGC CAAG GCCGCC TGCAGACAGAAAATG TERM 4692 3986700 - 3986688 - R 71 -4.8 -4.60797 | CCTGCAGACAGAAAA TGGC GCTCT GCCA CCTCGCCCGTGATAT hpt 3987259 - 3986729 - | hypoxanthine phosphoribosyltransferase TERM 4693 3987951 - 3987965 + G 74 -5.6 -4.43879 | CGCCCAGGACTTGGC CCGCTC CCT GACCGG TTTTGGTTACGTCAT AHA_3547 3987460 - 3988074 + | LitR, transcriptional regulator TERM 4694 3988123 - 3988094 - T 100 -19.3 -4.64861 | opp_overlap 3988094 CTCCGTCAAAATAAA GCGGCGCCGAACT GTTC AGGTCGGCGCCGC TTTTGTTTGTCCACT TERM 4695 3988094 - 3988123 + T 100 -19.3 -4.99645 | opp_overlap 3988094 CTCCGTCAAAATAAA GCGGCGCCGAACT GTTC AGGTCGGCGCCGC TTTTGTTTGTCCACT AHA_3548 3988760 - 3988149 - | 3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX mpl 3990127 - 3988757 - | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase ppa 3990306 - 3990836 + | inorganic pyrophosphatase TERM 4696 3990845 - 3990882 + TF 100 -17.9 -3.61715 | opp_overlap 3990856, overlap 3990856 CAAGTAAGCGTATCT CTCGTGAAAAAGGCGCC TCAA GGCGCCTTTTTTATGGG TTGTTGCGGGCGCTG TERM 4697 3990856 - 3990871 + TF 100 -11.8 -5.3236 | opp_overlap 3990856, overlap 3990845 ATCTCTCGTGAAAAA GGCGCC TCAA GGCGCC TTTTTTATGGGTTGT TERM 4698 3990871 - 3990856 - Tf 100 -11.8 -4.56775 | opp_overlap 3990856 3990845 ATCTCTCGTGAAAAA GGCGCC TCAA GGCGCC TTTTTTATGGGTTGT AHA_3551 3991170 - 3990862 - | hypothetical protein AHA_3552 3991145 - 3991243 + | hypothetical protein AHA_3553 3991349 - 3992227 + | hypothetical protein TERM 4699 3992468 - 3992452 - f 74 -4.5 -4.74103 | overlap 3992454 CCCTCAATGCAAAAA TCGTTAT AAC ATAACAA AAGGAGTGTCATCAG AHA_3554 3992485 - 3993027 + | hypothetical protein TERM 4700 3993057 - 3993039 - f 86 -13.1 -3.61983 | opp_overlap 3993039 3993054, overlap 3993015 CTAAGTCAGAGAGAA GGGGCGC TGATG GCGCCCC TTTGATAGGGGTCTA TERM 4701 3993039 - 3993057 + F 89 -13.8 -3.74251 | opp_overlap 3993015 3993039, overlap 3993054 CTAAGTCAGAGAGAA GGGGCGCT GAT GGCGCCCC TTTGATAGGGGTCTA AHA_3555 3993072 - 3993362 + | hypothetical protein AHA_3556 3993398 - 3993964 + | hypothetical protein TERM 4702 3994041 - 3994071 + G 73 -12.7 -3.13403 | gap 2, overlap 3994039 GTTGTACTCGATCTG CCCGCTCTCACCATC AGC GA-GG-GAGAGCGGG TGTTCATCAAGGGAC TERM 4703 3994163 - 3994185 + G 87 -17 -2.88544 | opp_overlap 3994148 CGGCACCCTGGAGGT GCTGGGCCAG CCG CTGGCCCGGC TCTCTGGCCGTGCCC TERM 4704 3994341 - 3994314 - g 71 -13.4 -2.57132 | gap 1, overlap 3994313 TTCTCCCCCGAGAAG CGGGCCCGGCTGC AAG GCAGCCCGGC-CG ATGAGGCGCGCCGCC AHA_3557 3993969 - 3994658 + | ABC transporter, ATP-binding protein AHA_3558 3994652 - 3995899 + | peptide ABC transporter permease AHA_3559 3995929 - 3996408 + | hypothetical protein TERM 4705 3996420 - 3996439 + F 100 -15 -4.77165 | opp_overlap 3996420 GTAACCAGGCACACA CGGCCTCC CTCG GGAGGCCG TTTTGTTATCCGCGA TERM 4706 3996439 - 3996420 - f 86 -15 -2.93435 | opp_overlap 3996420 GTAACCAGGCACACA CGGCCTCC CTCG GGAGGCCG TTTTGTTATCCGCGA AHA_3560 3996641 - 3997414 + | hypothetical protein TERM 4707 3997420 - 3997441 + F 81 -13.7 -2.90496 | overlap 3997417 TGCCCCCTGATCCCC TGGAGCCCG CCCC CGGGCTCCG TCGTTTCGCACACCG AHA_3561 3997678 - 3999306 + | aerotaxis receptor Aer TERM 4708 3999363 - 3999337 - f 100 -10.1 -5.95946 | gap 1, opp_overlap 3999336 3999335 CTAACAACAAAAAAA GGCCC-CTGTCG TCAC CGGCAGCGGGCC CATTTATCTCTGGTG TERM 4709 4000861 - 4000850 - g 95 -3.6 -5.69473 | CAGAGCATAAAAAAA CCGC AGCG GCGA GAAAAGATATCGACG TERM 4710 4001114 - 4001100 - g 73 -3.6 -4.67755 | AGACCTAGGGAAAAA CAATAT TGA ATATCG GCGTTACGAAAAACT AHA_3562 4000360 - 4001250 + | alpha/beta fold family hydrolase TERM 4711 4001745 - 4001734 - g 73 -3 -4.8143 | CTAATAACCTAAAAA GTAT AAAT ATAC TACTAGGGAGAAATG AHA_3563 4001682 - 4003133 + | hypothetical protein TERM 4712 4003183 - 4003155 - T 90 -10.9 -4.27467 | opp_overlap 4003156 4003157, overlap 4003157 TTAGAACGCAATAAA TAGGAGGGGGGAA ATG CCCCCCCCTCCCT TATATCACTGCTCTG TERM 4713 4003156 - 4003182 + T 74 -10.8 -3.53164 | opp_overlap 4003155 4003157, overlap 4003157 TAGAACGCAATAAAT AGGAGGGGGG AAATGCC CCCCCCTCCC TTATATCACTGCTCT TERM 4714 4003181 - 4003157 - T 100 -15.7 -3.73097 | opp_overlap 4003156 4003157, overlap 4003155 AGAACGCAATAAATA GGAGGGGGGAA ATG CCCCCCCCTCC CTTATATCACTGCTC TERM 4715 4003157 - 4003181 + T 83 -14.3 -2.71416 | opp_overlap 4003157 4003155, overlap 4003156 AGAACGCAATAAATA GGAGGGGGG AAATGCC CCCCCCTCC CTTATATCACTGCTC cysC 4003807 - 4003214 - | adenylylsulfate kinase AHA_3565 4005678 - 4003954 - | divalent anion:sodium symporter family protein TERM 4716 4004194 - 4004212 + g 70 -12.4 -3.21747 | opp_overlap 4004192 4004191, overlap 4004197 ACCCATGGGAAAGGC CAGCGCCG CGG CGGCGTTG TTGCTCATCAGCTCG TERM 4717 4004197 - 4004209 + g 74 -10.5 -3.75024 | opp_overlap 4004192 4004191, overlap 4004194 CATGGGAAAGGCCAG CGCCG CGG CGGCG TTGTTGCTCATCAGC TERM 4718 4004317 - 4004330 + g 81 -3.7 -5.03715 | overlap 4004318 CCAGTCGGCGATGAC CCGGG CCAG CCCGC TTTTTTCCAGCTGAT TERM 4719 4004531 - 4004516 - G 76 -7.5 -4.3898 | AGCACCCCGAGAAAA CCGCC CACCAC GGCGG CGCTGCGCGTGGCAT AHA_3566 4007110 - 4005683 - | sulfate adenylyltransferase subunit 1 AHA_3567 4008043 - 4007135 - | sulfate adenylyltransferase subunit 2 TERM 4720 4007548 - 4007558 + g 74 -4.6 -4.62069 | overlap 4007537 4007543 AGACGCGCCACAGCT CCGG GCG CTGG TTTTTCGGATCCCAG AHA_3568 4009564 - 4008152 - | siroheme synthase AHA_3569 4009762 - 4010682 + | membrane protease subunits AHA_3570 4010679 - 4011134 + | nodulation efficiency family protein TERM 4721 4011159 - 4011193 + T 76 -12.3 -3.03771 | gap 1, opp_overlap 4011169, overlap 4011169 AGGCGCCATGACCGC CAACGACAAAGGGCTC CTCG GAGCCCTTT-TCGCTG TCTTGCAAGCTGTGC TERM 4722 4011169 - 4011184 + T 90 -10.4 -4.28375 | opp_overlap 4011169, overlap 4011159 ACCGCCAACGACAAA GGGCTC CTCG GAGCCC TTTTCGCTGTCTTGC TERM 4723 4011184 - 4011169 - T 83 -10.4 -4.05714 | opp_overlap 4011169 4011159 ACCGCCAACGACAAA GGGCTC CTCG GAGCCC TTTTCGCTGTCTTGC AHA_3571 4011627 - 4011217 - | CBS domain-containing protein AHA_3572 4011781 - 4013691 + | ABC transporter, ATP-binding protein AHA_3573 4013702 - 4014145 + | hypothetical protein AHA_3574 4014139 - 4014993 + | protein involved in external DNA uptake TERM 4724 4015021 - 4015040 + T 100 -15 -5.15167 | CTCGCACACCGCCAA GGGCCTGC CACT GCAGGCCC TTTTTATTGGTCATG AHA_3575 4015973 - 4015044 - | transcriptional regulator TERM 4725 4016362 - 4016334 - g 70 -12.3 -3.17392 | GATTGCCGAACTCAA GGCCGCCGACCTG CTG CTGATCGGCGCCC CCATGTACAACCTCA TERM 4726 4016520 - 4016482 - g 76 -9.5 -4.09685 | gap 1, opp_overlap 4016474 GTGGAGGGGGTAAAA GCCCTGGTGTTCAGCAGC CGCG GCGGC-GTACATCAGGGC CAGACAACGGATGCG AHA_3576 4016083 - 4016682 + | acyl carrier protein phosphodiesterase TERM 4727 4016758 - 4016744 - T 100 -12.8 -5.64421 | opp_overlap 4016744 ACGCCAAATAAAAAA GCCCCG TCA CGGGGC TTTTTCCATGCCAGC TERM 4728 4016744 - 4016758 + T 100 -12.8 -4.65895 | opp_overlap 4016744 ACGCCAAATAAAAAA GCCCCG TCA CGGGGC TTTTTCCATGCCAGC AHA_3577 4017054 - 4016779 - | hypothetical protein TERM 4729 4017435 - 4017478 + G 80 -4.6 -4.89477 | CGGCGAGCTGCTCAC CGGCGGCG-TGATGGCGATG ATCGAG CCT-GCCATCAACACCGTCG TTTTCTTCTTCCACG AHA_3578 4017172 - 4017534 + | hypothetical protein TERM 4730 4017519 - 4017571 + F 85 -12.6 -3.48276 | gap 1 GCGCGCCCGTCAGCA GCTGGCACTGGCCTGAGGGAGGGGC TGCG GCCCTTCCC-CACGCTTGGACCAGC TTCTCTCCCCCCGGC TERM 4731 4017932 - 4017949 + G 78 -6.3 -4.56597 | gap 1, opp_overlap 4017930 4017932 4017933, overlap 4017932 4017933 GCTGGTGGTGAAAGA C-CTGGCT GCC AGCCAGCG TTTTTACACAGCCGC AHA_3579 4017870 - 4018298 + | glyoxalase family protein TERM 4732 4020089 - 4020067 - g 74 -2.1 -4.86939 | overlap 4020071 TAATAAATGTAAAAA CAAATAAAA GAACT TTTTCTTTG AACGATAATTGGGAG TERM 4733 4020090 - 4020071 - g 74 -2.2 -4.92828 | overlap 4020067 AAATGTAAAAACAAA TAAAAGAA CTTT TTCTTTGA ACGATAATTGGGAGG TERM 4734 4020139 - 4020153 + G 84 -8.6 -4.45544 | opp_overlap 4020138 TCAGCCAAAAAATGT CTCCTA GTT TAGGAG TTTTCATTAATCAAG AHA_3580 4018374 - 4020203 + | ATP-dependent DNA helicase RecG TERM 4735 4020256 - 4020228 - f 75 -11.7 -2.88337 | opp_overlap 4020235, overlap 4020225 4020235 ACGATACTATAACTA CCAGATACCGGCC TAA AGCCGGTGTCTGA ATCAAACTTCCCCCA AHA_3581 4020513 - 4021343 + | hydrolase protein, putative TERM 4736 4021373 - 4021344 - T 88 -13.7 -3.35349 | opp_overlap 4021349, overlap 4021349 AAACAACCGGCATAA GAAAACCGGAACC CAAG GGTTCCGGTTTTT TCATCAAGGCATCAG TERM 4737 4021349 - 4021368 + T 100 -13.6 -5.14563 | opp_overlap 4021344 4021349 ACCGGCATAAGAAAA CCGGAACC CAAG GGTTCCGG TTTTTTCATCAAGGC TERM 4738 4021368 - 4021349 - T 100 -13.6 -4.77567 | opp_overlap 4021349, overlap 4021344 ACCGGCATAAGAAAA CCGGAACC CAAG GGTTCCGG TTTTTTCATCAAGGC AHA_3582 4022486 - 4021377 - | hypothetical protein TERM 4739 4022526 - 4022547 + r 95 -14.5 -3.16437 | overlap 4022519 TGTCCATCCTCACGC TGCCCACTC ATCA GAGTGGGCA TATTGAAATTTTCTC TERM 4740 4022609 - 4022594 - R 100 -9 -4.87807 | TCAACAGATGAAAAA GGAACC ATAC GGTTCC GGCTTTCATCATGCC TERM 4741 4022740 - 4022768 + r 100 -16.1 -3.50393 | opp_overlap 4022746, overlap 4022746 GTCGCTTGTACTGGC AAAAAAGCCCCGC ATC GCGGGGCTTTTTG TTATCTGCAATAGCC TERM 4742 4022762 - 4022746 - R 100 -15.1 -5.03314 | opp_overlap 4022740 4022746 TGTACTGGCAAAAAA GCCCCGC ATC GCGGGGC TTTTTGTTATCTGCA TERM 4743 4022746 - 4022762 + r 100 -15.1 -5.24796 | opp_overlap 4022746, overlap 4022740 TGTACTGGCAAAAAA GCCCCGC ATC GCGGGGC TTTTTGTTATCTGCA putP 4024304 - 4022787 - | sodium/proline symporter TERM 4744 4024552 - 4024576 + r 72 -11.3 -3.01712 | opp_overlap 4024554 CACGACCGCAAAAAA AAGCCCCGACC AGA GGTCGGGGCCA TGTTGGCAAGCACCA TERM 4745 4024574 - 4024554 - R 100 -18.3 -5.78622 | opp_overlap 4024552 CGACCGCAAAAAAAA GCCCCGACC AGA GGTCGGGGC CATGTTGGCAAGCAC AHA_3584 4025627 - 4024593 - | LysM domain-containing protein TERM 4746 4024992 - 4025017 + g 76 -13.2 -3.53012 | CATGGGGTTGTCCGG GCCGGCCGGC CACACC GCCGGCAGGC TTTCACCACGGGCGG TERM 4747 4025351 - 4025370 + g 76 -5.6 -4.63218 | gap 1 GGAATTTGGCGGCGG CGGCC-TCC AGC GGCTGGCCG TTTTCTTCGGCCGGG TERM 4748 4025656 - 4025669 + r 100 -6.7 -5.60993 | overlap 4025646 AGTGGCGGCGGGTCG GCGAT TAAT ATCGC TTTTTTTATCCGCCG AHA_3585 4026948 - 4025707 - | mechanosensitive ion channel TERM 4749 4027066 - 4027035 - R 100 -20.2 -3.86015 | opp_overlap 4027041, overlap 4027036 4027038 CACGGCCGCCACAAA CGACAACGCCCGGC AGGG GCCGGGCGTTGTCT GGGAGCGAGGGGGCG TERM 4750 4027065 - 4027036 - R 100 -23.7 -2.91395 | opp_overlap 4027041, overlap 4027035 4027038 ACGGCCGCCACAAAC GACAACGCCCGGC AGGG GCCGGGCGTTGTC TGGGAGCGAGGGGGC TERM 4751 4027063 - 4027038 - R 100 -20.5 -3.00946 | opp_overlap 4027041, overlap 4027036 4027035 GGCCGCCACAAACGA CAACGCCCGGC AGGG GCCGGGCGTTG TCTGGGAGCGAGGGG TERM 4752 4027041 - 4027060 + r 100 -16.4 -3.48276 | opp_overlap 4027038 4027036 4027035 CGCCACAAACGACAA CGCCCGGC AGGG GCCGGGCG TTGTCTGGGAGCGAG ackA-2 4028281 - 4027082 - | acetate kinase AHA_3587 4028926 - 4028456 - | hypothetical protein TERM 4753 4028993 - 4028977 - R 84 -5.8 -5.0925 | opp_overlap 4028977 CCGCAAAATGAAAAA GGACCC TGTTG AGGTCC TTGTGTCACACCGCC TERM 4754 4029201 - 4029184 - R 100 -12.7 -4.7173 | opp_overlap 4029184 GACCAGACGCAAAAA CGGGAGC ATCT GCTCCCG TTTTTTTCGCATCAC TERM 4755 4029184 - 4029201 + r 100 -12.7 -5.44119 | opp_overlap 4029184 GACCAGACGCAAAAA CGGGAGC ATCT GCTCCCG TTTTTTTCGCATCAC AHA_3588 4030343 - 4029237 - | acyltransferase family protein TERM 4756 4030477 - 4030499 + r 100 -7.7 -5.27779 | opp_overlap 4030480, overlap 4030480 ACCAGTGAAATGAAC AAATGGCCC CGTTC GGGCCATTC TTTTTTACTCTTCCA TERM 4757 4030496 - 4030480 - R 85 -9.4 -4.40298 | opp_overlap 4030477 4030480 AGTGAAATGAACAAA TGGCCC CGTTC GGGCCA TTCTTTTTTACTCTT TERM 4758 4030480 - 4030496 + r 93 -9.4 -4.71318 | opp_overlap 4030480, overlap 4030477 AGTGAAATGAACAAA TGGCCC CGTTC GGGCCA TTCTTTTTTACTCTT AHA_3589 4032153 - 4030504 - | multicopper oxidase AHA_3590 4033102 - 4032410 - | aspartate racemase TERM 4759 4033208 - 4033195 - R 100 -9.5 -5.4505 | CCCGTGAATAAAAAA GGCCC CGCA GGGCC AACAAGACAGCCGGT TERM 4760 4033247 - 4033228 - R 76 -12.8 -2.7395 | overlap 4033219 4033227 AGACAGCCGGTAAAG GCCCGGGC GCAG GCCCGGAC TAAATCCAGATCATC TERM 4761 4033296 - 4033261 - R 72 -11.8 -2.68799 | overlap 4033252 ACTAAATCCAGATCA TCAGCACGCAGGCCGC CGTG GCGACCCCCATGCCGA GATTGAAACGACGCC AHA_3591 4033837 - 4033247 - | lysine exporter protein TERM 4762 4034574 - 4034604 + G 78 -6.3 -4.59414 | gap 1, overlap 4034568 4034575 CTTTGTACTCCTGAA CTGCGCACATTGTA TCGA TACAATGTGC-CAC TTTTGGTTGTTATCG AHA_3592 4033899 - 4036052 + | transcriptional regulator, GntR family/aminotransferase, classes I and II family protein AHA_3593 4036095 - 4036559 + | hypothetical protein TERM 4763 4037213 - 4037259 + GF 70 -10.1 -3.31726 | opp_overlap 4037179 4037201, overlap 4037207 4037211 CAAGGCCACGCCGCT GTCGGCCGCCGGCCAGG GCTTTGCCGACTA CCTGGCTGCCAGCCGAC TCTTCTATCAGGGGG TERM 4764 4038246 - 4038290 + GF 70 -8.9 -3.64703 | ACCCACGGCGACTAC CGGGGCTTCCTGCAGGATCTG GCG CTGGCCCCGCTGGCCGCCCCG TTTGACTGGCAAGGG AHA_3594 4036620 - 4038719 + | hypothetical protein AHA_3596 4038689 - 4039414 + | hypothetical protein AHA_3595 4041048 - 4039411 - | hypothetical protein AHA_3597 4039525 - 4041150 + | hypothetical protein AHA_3598 4042484 - 4041171 - | sodium-dependent symporter family protein TERM 4765 4042572 - 4042555 - H 100 -10.5 -5.4505 | opp_overlap 4042555 CGGGGCAACAAAAAA GGCCGCC TGGT GGCGACC TTTGCAATGAACATT TERM 4766 4042825 - 4042793 - g 72 -4 -4.56597 | GGCCGGCGCCAAAAA TCAGCGCCGTAGCC TCCTC GCCCACGGCCTTGA ACGATAATAGTCTTA AHA_3599 4042708 - 4043655 + | hypothetical protein AHA_3600 4044969 - 4043656 - | sodium-dependent transporter TERM 4767 4045134 - 4045153 + r 100 -13.6 -4.10161 | opp_overlap 4045134 GCCAACAAATAAAAA CCGGAGCA ATTT TGCTCCGG TTTTACAGGGTGGTG TERM 4768 4045153 - 4045134 - R 100 -13.6 -5.47159 | opp_overlap 4045134 GCCAACAAATAAAAA CCGGAGCA ATTT TGCTCCGG TTTTACAGGGTGGTG AHA_3601 4046023 - 4045184 - | isopenicillin N synthase TERM 4769 4046158 - 4046143 - H 90 -4.6 -5.41746 | AACCGCTCAAAAAAA GGCGCC AGCC AGCACC GTTTTTCATCCCTTG AHA_3602 4046232 - 4046795 + | ATPase involved in DNA repair TERM 4770 4046829 - 4046800 - T 85 -11.6 -3.97368 | gap 1, opp_overlap 4046801 4046807, overlap 4046807 TCGGGAACTGACAAA CAAAAAAGGGGCC GACAT GGCCCC-TTTTTG TTTCTGTGTATCTTC TERM 4771 4046801 - 4046829 + T 95 -12.5 -4.2109 | opp_overlap 4046800 4046807, overlap 4046807 CGGGAACTGACAAAC AAAAAAGGGGCCG ACA TGGCCCCTTTTTG TTTCTGTGTATCTTC TERM 4772 4046823 - 4046807 - T 100 -10.8 -5.72622 | opp_overlap 4046801 4046807, overlap 4046800 CTGACAAACAAAAAA GGGGCC GACAT GGCCCC TTTTTGTTTCTGTGT TERM 4773 4046807 - 4046823 + T 100 -11.5 -5.4433 | opp_overlap 4046807 4046800, overlap 4046801 CTGACAAACAAAAAA GGGGCCG ACA TGGCCCC TTTTTGTTTCTGTGT AHA_3603 4047669 - 4046848 - | phosphatase YbhA AHA_3604 4049213 - 4047972 - | MFS family transporter AHA_3605 4049380 - 4050000 + | hypothetical protein TERM 4774 4050051 - 4050018 - f 100 -15.5 -3.93236 | opp_overlap 4050021 4050025 4050050, overlap 4050021 4050025 CACGAACGCCAGAAA CAACAAAGCAGGC GCCGGGAT GCCTGCTTTGTTG CCTTCGGGGAGGGGA TERM 4775 4050048 - 4050021 - f 88 -11.4 -4.08948 | opp_overlap 4050021 4050025, overlap 4050018 4050025 GAACGCCAGAAACAA CAAAGCAGGC GCCGGGAT GCCTGCTTTG TTGCCTTCGGGGAGG TERM 4776 4050021 - 4050048 + F 78 -12.1 -3.17075 | opp_overlap 4050021 4050018 4050025, overlap 4050025 GAACGCCAGAAACAA CAAAGCAGGCG CCGGGA TGCCTGCTTTG TTGCCTTCGGGGAGG TERM 4777 4050044 - 4050025 - f 75 -6.4 -4.63048 | opp_overlap 4050025 4050021, overlap 4050021 4050018 GCCAGAAACAACAAA GCAGGC GCCGGGAT GCCTGC TTTGTTGCCTTCGGG TERM 4778 4050025 - 4050044 + F 74 -7.1 -4.2528 | opp_overlap 4050021 4050018 4050025, overlap 4050021 GCCAGAAACAACAAA GCAGGCG CCGGGA TGCCTGC TTTGTTGCCTTCGGG AHA_3606 4050309 - 4050785 + | bkd operon transcriptional regulator TERM 4779 4050815 - 4050855 + T 100 -28.7 -2.78463 | opp_overlap 4050776 4050822, overlap 4050817 4050822 CGGCGGGCCAGACCG GATAAAAGAAGAGGAGGCC ACT GGCCTCCTCTTCTTTTATC TGTAGTCAGCAGCCT TERM 4780 4050817 - 4050853 + T 100 -25.5 -2.94099 | opp_overlap 4050822, overlap 4050815 4050822 GCGGGCCAGACCGGA TAAAAGAAGAGGAGGCC ACT GGCCTCCTCTTCTTTTA TCTGTAGTCAGCAGC TERM 4781 4050848 - 4050822 - T 100 -21 -4.41548 | opp_overlap 4050817 4050815 4050822 CCAGACCGGATAAAA GAAGAGGAGGCC ACT GGCCTCCTCTTC TTTTATCTGTAGTCA TERM 4782 4050822 - 4050848 + T 100 -21 -4.62984 | opp_overlap 4050822, overlap 4050817 4050815 CCAGACCGGATAAAA GAAGAGGAGGCC ACT GGCCTCCTCTTC TTTTATCTGTAGTCA AHA_3607 4051192 - 4050875 - | hypothetical protein TERM 4783 4051293 - 4051308 + r 83 -11.8 -3.70364 | opp_overlap 4051293 GGATCGCGAAAAAAA CCGGCC AGTC GGCCGG TTGTGTCATTTTATG TERM 4784 4051308 - 4051293 - R 100 -11.8 -5.42259 | opp_overlap 4051293 GGATCGCGAAAAAAA CCGGCC AGTC GGCCGG TTGTGTCATTTTATG AHA_3608 4051565 - 4051338 - | hypothetical protein AHA_3609 4052093 - 4051599 - | MarR family transcriptional regulator AHA_3610 4052137 - 4052613 + | organic hydroperoxide reductase AHA_3611 4052696 - 4053700 + | NADP-dependent oxidoreductase p1 TERM 4785 4053742 - 4053769 + F 100 -12 -5.35459 | AGACTGCTTGCATGA CGGGCCCATC CGCCCTAA GGTGGGCCCG TTTTTTATGGTCTGT AHA_3612 4053807 - 4054250 + | nudix hydrolase 1 TERM 4786 4054819 - 4054866 + G 72 -12 -3.28712 | gap 1, overlap 4054820 CACGGCCTCAAGCTG TTGGC-GCTGGTGGTGGTCGCCG ATG CGGTGCTCACCATGAGCCGCCAG TTCTGCAAGACGACG AHA_3613 4054477 - 4055628 + | chromate transport protein ChrA TERM 4787 4055656 - 4055681 + T 100 -21.9 -4.67353 | opp_overlap 4055656 GCGGCCACAAAGAAA CGGCCCCCTGC CAAG GCAGGGGGCCG TTTTTGCATGGATGC TERM 4788 4055681 - 4055656 - T 100 -21.9 -4.55295 | opp_overlap 4055656 GCGGCCACAAAGAAA CGGCCCCCTGC CAAG GCAGGGGGCCG TTTTTGCATGGATGC msrB 4056101 - 4055709 - | methionine-R-sulfoxide reductase glgX-2 4058299 - 4056158 - | glycogen debranching enzyme GlgX TERM 4789 4057823 - 4057799 - G 74 -13.5 -2.89191 | GCAGATGCCCAGATA GGTGCCGCGCA GCT CGCTCGGCACC CCCTGATGCTGGCGG glgB 4060476 - 4058299 - | glycogen branching enzyme malQ 4062835 - 4060559 - | 4-alpha-glucanotransferase TERM 4790 4061830 - 4061801 - G 71 -12.9 -3.10677 | gap 1, overlap 4061792 AACGAAGGCATCGAA GGCAGCCTGA-CGC TCG GCGCTCAGGCTGGC CTGGTCGAACACCTG TERM 4791 4063124 - 4063138 + G 74 -9.2 -3.94184 | overlap 4063125 4063135 AGGTATTAACGGTTT TGGCCG CAT CGGCCG TTTCGTCTTCCGTCT gap-2 4063095 - 4064090 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 4792 4064116 - 4064144 + F 100 -16.1 -3.21276 | opp_overlap 4064105 4064122, overlap 4064122 GCAATCAAGTAGCTT GAAAAAGGCGGCC ATT GGCCGCCTTTTTG TATTCTGGACCGGGA TERM 4793 4064138 - 4064122 - f 100 -15.1 -4.60889 | opp_overlap 4064116 4064122 AAGTAGCTTGAAAAA GGCGGCC ATT GGCCGCC TTTTTGTATTCTGGA TERM 4794 4064122 - 4064138 + F 100 -15.1 -5.1523 | opp_overlap 4064122, overlap 4064116 AAGTAGCTTGAAAAA GGCGGCC ATT GGCCGCC TTTTTGTATTCTGGA TERM 4795 4064793 - 4064770 - g 74 -9.6 -3.87815 | gap 1, overlap 4064774 4064784 4064785 CCCTATGCCGACAAA CTGACCGGCCA GAA TGGCCAG-CAG CAGGGTCCTCTGACC AHA_3619 4064206 - 4065072 + | aldose 1-epimerase family protein TERM 4796 4065087 - 4065128 + T 90 -10.9 -4.24745 | opp_overlap 4065097, overlap 4065097 ACAATACGCTGAACA GATAAATAAAGAGGGCTCC CGCG GGAGCCCTCTTTGCATCTC TTTGTCTTGGTAATC TERM 4797 4065097 - 4065118 + T 100 -15.9 -3.79565 | opp_overlap 4065097, overlap 4065087 GAACAGATAAATAAA GAGGGCTCC CGCG GGAGCCCTC TTTGCATCTCTTTGT TERM 4798 4065118 - 4065097 - T 100 -15.9 -4.68132 | opp_overlap 4065097 4065087 GAACAGATAAATAAA GAGGGCTCC CGCG GGAGCCCTC TTTGCATCTCTTTGT nadA 4066176 - 4065142 - | quinolinate synthetase AHA_3621 4066356 - 4068461 + | methyl-accepting chemotaxis protein TERM 4799 4068501 - 4068484 - T 100 -12.7 -5.93809 | opp_overlap 4068484 CGGCCATAAAAAAAA GCCCGCA TTGC TGCGGGC TTTTTCAATCTGGTG TERM 4800 4068484 - 4068501 + T 100 -12.7 -4.7173 | opp_overlap 4068484 CGGCCATAAAAAAAA GCCCGCA TTGC TGCGGGC TTTTTCAATCTGGTG AHA_3636 4070859 - 4070047 - | TPR domain-containing protein TERM 4801 4070896 - 4070885 - R 75 -3.6 -4.88918 | opp_overlap 4070887, overlap 4070886 4070887 TTAGGGCAAATAAAA CGGC CAGC GCCA TCGTCGCTCGCTTAT TERM 4802 4070974 - 4070957 - R 100 -11.3 -4.88918 | opp_overlap 4070956 TTAGTGCAAATAAAA CGGCCAT CGAA ATGGCCG CTTGCATATAAACGA TERM 4803 4070999 - 4070987 - R 71 -7.7 -4.03234 | opp_overlap 4070987 4070986 CCGCTTGCATATAAA CGAAC TTC GTTCG GTTTAAACCTTAGTA TERM 4804 4071023 - 4071033 + r 87 -8.2 -4.56597 | opp_overlap 4071017 4071023 CTTAGTAAACCAGAA CCGC ACG GCGG TTTTTGGCAAAGGCA pal 4071533 - 4071009 - | peptidoglycan-associated lipoprotein tolB 4072908 - 4071583 - | beta-propeller repeat-containing to-pal system protein TolB tolA 4074166 - 4073003 - | protein TolA tolR 4074618 - 4074172 - | protein TolR tolQ 4075307 - 4074618 - | protein TolQ AHA_3642 4075704 - 4075297 - | acyl-CoA thioester hydrolase YbgC TERM 4805 4075806 - 4075772 - R 100 -15.7 -4.08853 | opp_overlap 4075773 4075775, overlap 4075773 4075775 CTGAATAGGAAAGAA GCAGGGGGAAGCAGG GAAAT CCTGCCTCCCCCCGT TTTTTATGAAAGGAA TERM 4806 4075773 - 4075805 + r 100 -15.5 -5.24129 | opp_overlap 4075772 4075773 4075775, overlap 4075775 TGAATAGGAAAGAAG CAGGGGGAAGCAGGG AAA TCCTGCCTCCCCCCG TTTTTTATGAAAGGA TERM 4807 4075805 - 4075773 - R 100 -19.2 -3.04589 | opp_overlap 4075773 4075775, overlap 4075772 4075775 TGAATAGGAAAGAAG CAGGGGGAAGCAGG GAAAT CCTGCCTCCCCCCG TTTTTTATGAAAGGA TERM 4808 4075775 - 4075803 + r 90 -16.7 -2.83915 | opp_overlap 4075773 4075772 4075775, overlap 4075773 AATAGGAAAGAAGCA GGGGGAAGCAGGG AAA TCCTGCCTCCCCC CGTTTTTTATGAAAG TERM 4809 4075803 - 4075775 - R 100 -18.2 -3.06743 | opp_overlap 4075775 4075773, overlap 4075773 4075772 AATAGGAAAGAAGCA GGGGGAAGCAGG GAAAT CCTGCCTCCCCC CGTTTTTTATGAAAG AHA_3643 4076166 - 4075810 - | protein YbgE TERM 4810 4076048 - 4076022 - GR 100 -17.3 -4.09685 | overlap 4076037 TGGGAGCCTGTAAAA TGGCGACGGCC AACAG GGCCGCCGCCA ACAGCATCAACCCCT AHA_3644 4076224 - 4076108 - | cyd operon protein YbgT cydB-2 4077375 - 4076239 - | cytochrome d ubiquinol oxidase, subunit II cydA 4078944 - 4077388 - | cytochrome d ubiquinol oxidase, subunit I TERM 4811 4078651 - 4078630 - G 76 -10.9 -3.7282 | overlap 4078627 4078640 GGATTCCAGGAAGAA GGCCATCAA GCCT TCGATGGCC AGCGGGGCCCCGAAG TERM 4812 4079116 - 4079104 - R 95 -2.7 -5.8187 | TATGGAACAAAAAAA GCTAA TGT TTAAC AATCGCAAAACAATC TERM 4813 4079218 - 4079232 + r 77 -8.6 -4.07568 | opp_overlap 4079218 4079216 4079214 4079204 ACCATCATGAATACA TGCCTT TTA AAGGCA TTTTCACGACCGACG TERM 4814 4079299 - 4079281 - R 87 -2.4 -5.60993 | opp_overlap 4079297, overlap 4079297 TGCGTCACAAAAAAA CAAAGATC GCA AATCATTG ATTTAAATCAAATTT TERM 4815 4079796 - 4079817 + r 100 -11.5 -5.75342 | TCCTGAATTGTCTTT GCCCACCGC ATCC GCAGTGGGC TTTTTTTTGCCCGGA TERM 4816 4079865 - 4079836 - R 95 -15.2 -3.28712 | opp_overlap 4079836 4079843, overlap 4079843 TTTTTGCCCGGATAA CAAAAAACCGCC TCTGGC GGCGGTTTTTTG TTCAATCAGCTATTT TERM 4817 4079836 - 4079865 + r 91 -15.2 -3.08187 | opp_overlap 4079836 4079843, overlap 4079843 TTTTTGCCCGGATAA CAAAAAACCGCC TCTGGC GGCGGTTTTTTG TTCAATCAGCTATTT TERM 4818 4079855 - 4079843 - R 100 -10.5 -5.55769 | opp_overlap 4079836 4079843, overlap 4079836 CCGGATAACAAAAAA CCGCC TCT GGCGG CGGTTTTTTGTTCAA TERM 4819 4079843 - 4079858 + r 100 -7.5 -5.4833 | opp_overlap 4079843 4079836, overlap 4079836 CCGGATAACAAAAAA CCGCC TCTGGC GGCGG TTTTTTGTTCAATCA ruvB 4080891 - 4079881 - | Holliday junction DNA helicase B ruvA 4081514 - 4080900 - | Holliday junction DNA helicase RuvA TERM 4820 4081586 - 4081571 - H 74 -7.6 -4.17309 | TAGCATAAAGAATAA CTGGAT AAGT ATCCAG CATAGGGCGGTGAGG AHA_3649 4081753 - 4083762 + | methyl-accepting chemotaxis protein TERM 4821 4083787 - 4083767 - f 84 -13.9 -3.14132 | opp_overlap 4083768 TTCGGGTCTGACCAA CGCGGGGGC TAT GCCCCCGCT TTCTCCCGTCGTACG TERM 4822 4083768 - 4083786 + F 100 -17.4 -3.90318 | opp_overlap 4083767 TCGGGTCTGACCAAC GCGGGGGC TAT GCCCCCGC TTTCTCCCGTCGTAC TERM 4823 4084073 - 4084055 - g 100 -7.4 -5.40072 | overlap 4084062 GGGTTCTGAAAAAAA TCGAGAAC ATT GTTCGCGA AGAGATGAACAATGC proS 4083898 - 4085622 + | prolyl-tRNA synthetase TERM 4824 4085643 - 4085672 + T 100 -15.1 -4.36914 | opp_overlap 4085649, overlap 4085649 CCCCCTAGCCCCCAT AAAAAAGCGCGCC ATTT GGCGCGCTTTTTG TTTTCTGCCGCAGGG TERM 4825 4085649 - 4085666 + T 100 -14.1 -5.54907 | opp_overlap 4085649, overlap 4085643 AGCCCCCATAAAAAA GCGCGCC ATTT GGCGCGC TTTTTGTTTTCTGCC TERM 4826 4085666 - 4085649 - T 100 -14.1 -5.24531 | opp_overlap 4085649 4085643 AGCCCCCATAAAAAA GCGCGCC ATTT GGCGCGC TTTTTGTTTTCTGCC AHA_3651 4086386 - 4085709 - | short chain dehydrogenase/reductase family oxidoreductase AHA_3652 4087080 - 4086451 - | hypothetical protein AHA_3653 4087616 - 4087176 - | transporter TERM 4827 4088250 - 4088277 + G 85 -14.2 -3.57144 | overlap 4088206 4088204 TGTTGGCGGCCGCAG CCCTGCTCCC CTTTGCCC GGGAGCAGGG TTTGAAACTGGCGGC AHA_3654 4087676 - 4088455 + | enoyl-CoA hydratase/isomerase family protein AHA_3655 4088887 - 4088459 - | hypothetical protein AHA_3656 4089178 - 4089843 + | chloramphenicol acetyltransferase TERM 4828 4089844 - 4089874 + T 91 -11.1 -4.2558 | gap 1, opp_overlap 4089848, overlap 4089846 4089847 CGGCAACCATCATGA CGA-AGCGGGGGGC ATTG GCCCCCCGCAGTTG TTTTGATAGCGGCTA TERM 4829 4089846 - 4089871 + T 93 -11.7 -4.25256 | opp_overlap 4089848, overlap 4089844 4089847 GCAACCATCATGACG AAGCGGGGGGC ATTG GCCCCCCGCAG TTGTTTTGATAGCGG TERM 4830 4089847 - 4089870 + T 91 -15.2 -3.14672 | opp_overlap 4089848, overlap 4089846 4089844 CAACCATCATGACGA AGCGGGGGGC ATTG GCCCCCCGCA GTTGTTTTGATAGCG TERM 4831 4089869 - 4089848 - T 100 -18.7 -3.2396 | opp_overlap 4089847 4089846 4089844 AACCATCATGACGAA GCGGGGGGC ATTG GCCCCCCGC AGTTGTTTTGATAGC AHA_3657 4090602 - 4089895 - | hypothetical protein TERM 4832 4090926 - 4090895 - g 71 -10.8 -3.46285 | overlap 4090889 CACCTGAAAGACGAA CCGGCGAGCCTGAG CCCG CTCAAGCTGGTCGG CCTGCCCGAGTTGCA TERM 4833 4091888 - 4091854 - g 74 -12 -3.41051 | overlap 4091875 GGAGCTGGACGACAA GGCCAGAGCCCTGCTC AAG GAGGCGGGCTACGGCC CGACCAACCCGCTCA TERM 4834 4091959 - 4091944 - g 74 -9 -3.8969 | CGAGGTACACAAGAA GATGGC GCTG GCCATC GCCAACCTGTGGAAA TERM 4835 4092007 - 4091980 - g 74 -10.6 -3.81488 | gap 1 CCTGTGGAAACAGAA GCTGG-GAGCCCG GGT CGAGCTCACCAAC CAGGAGTGGAAAACC AHA_3658 4090775 - 4092379 + | periplasmic murein peptide-binding protein TERM 4836 4092386 - 4092408 + G 90 -18.4 -3.10499 | opp_overlap 4092376 AAACACTGACCCTGT GGGGGCCGGC CAT GCCGGCTCCC TCTCTTCCCCTGTTC AHA_3659 4092384 - 4092803 + | hypothetical protein TERM 4837 4092809 - 4092830 + T 100 -15.9 -4.84359 | opp_overlap 4092809 GCCGTCATGAAAAAA GCCCCGAAC CTGC GTTCGGGGC TTTTTCTGGGCATGA TERM 4838 4092830 - 4092809 - T 100 -15.9 -5.14563 | opp_overlap 4092809 GCCGTCATGAAAAAA GCCCCGAAC CTGC GTTCGGGGC TTTTTCTGGGCATGA AHA_3660 4093277 - 4092858 - | hypothetical protein AHA_3661 4093595 - 4093296 - | hypothetical protein AHA_3662 4094146 - 4093595 - | integral membrane protein proC 4095011 - 4094187 - | pyrroline-5-carboxylate reductase TERM 4839 409