TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.720451 %AT, 969376 nt, 5287 terms. Intergenic: 0.745092 %AT, H2T: 195959 nt, 1307 terms; T2T: 54287 nt, 706 terms; H2H: 79158 nt, 1063 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|203287471|ref|NC_011244.1| Borrelia recurrentis A1, complete genome (length 930981) vlp-a 3295 - 2174 - | vlp protein, alpha subfamily TERM 1 2727 - 2737 + g 70 -5.4 -4.56702 | opp_overlap 2727 ACTATTCCTTTAAAT GCAT TAT ATGC TTTCTTTAATTCAGG TERM 2 5023 - 5038 + r 70 -6.2 -4.18488 | opp_overlap 5025 TTGTCAACATTGTAA CATGTT AATG AACATG TTTCTTAGCATAAAT TERM 3 5230 - 5214 - R 71 -6.7 -3.9534 | ATCCATACTTATAAA TAGTATT CGT AATACTA CAATCCATAGTACAA TERM 4 6577 - 6541 - R 74 -5.4 -4.89063 | gap 2, opp_overlap 6555 TTATTTAAAAATAAA GAAGGCAATCTAAACAAA TCT TTTGCTT-G-CTGCCTTC TAATCCTATTACTTA vlp-d 7989 - 6895 - | vlp protein, delta subfamily TERM 5 7319 - 7338 + g 72 -6.4 -4.39166 | overlap 7311 TCTCTCTTAGCATCT GCATTAGC TGCT GCTATTGC TTTTAATATGTCAGC TERM 6 8417 - 8397 - H 74 -5.6 -4.84539 | TAAGTAAATAGAAAA TTAAATGA TAAAG TCATTTAA GGGAAACACTTTTCT TERM 7 8575 - 8588 + H 76 -6.7 -4.51224 | TTTATATTTTTAATC CACTG TCAA CAGTG TTTCTTATTGCTATT TERM 8 8753 - 8730 - H 76 -8.2 -3.7645 | opp_overlap 8733, overlap 8733 ATTCAATGAACACAA CAAGAGAGCC ATAA AGCTCTCTTA TCTCCTTTTTTCAGA TERM 9 8750 - 8733 - H 74 -7.7 -4.00234 | opp_overlap 8733, overlap 8730 CAATGAACACAACAA GAGAGCC ATAA AGCTCTC TTATCTCCTTTTTTC TERM 10 9320 - 9294 - H 70 -3.8 -5.20781 | CACTACAAAATAAAA GATACCAAGA ACTTAAA TCCTAGTATC TTTACTTTATAATTT TERM 11 10613 - 10603 - H 73 -4 -5.40004 | CATCAAACGAAAAAA TCAT AAC ATGA ATATATCAAATTTAT TERM 12 11246 - 11209 - H 72 -8.1 -3.32579 | gap 1, opp_overlap 11209 TAACAAAATACTTAA CTATTATTTCTATA-TTC ACA GATCTATAGAAATAATAG TTTTCTATCTTGACT TERM 13 11209 - 11246 + H 86 -8.1 -4.68545 | gap 1, opp_overlap 11209 TAACAAAATACTTAA CTATTATTTCTATA-TTC ACA GATCTATAGAAATAATAG TTTTCTATCTTGACT BRE_6 12958 - 13524 + | hypothetical protein TERM 14 13595 - 13574 - T 78 -4.5 -5.33785 | overlap 13576 AAGTATTATAAAAAA GATAACTTT AATA AAAGTTAAC ATAAAATTTTTCAAT BRE_7 14737 - 13640 - | beta-N-acetylhexosaminidase, putative TERM 15 14353 - 14368 + gT 75 -3.4 -5.46129 | AACCAAGATATTTTT TTAATT TTTC AATTAA TTTTTTAGTTTGTTC BRE_8 16163 - 14670 - | hypothetical protein TERM 16 15905 - 15892 - GH 72 -3.1 -5.36364 | GTAAAAACATAAAAA TCACC TTCT GATGA AAATAAAAACTTTCT femD 16218 - 18008 + | phosphoglucomutase trsA 19137 - 18085 - | tryptophanyl-tRNA synthetase BRE_11 20225 - 19134 - | hypothetical protein TERM 17 19358 - 19336 - G 74 -2.7 -5.59655 | CAAAGCAATAAAAAA GGAGACAGA TCAAG TCTATGTCC CTGCATCTTTGGCTC TERM 18 19953 - 19943 - G 70 -5.4 -4.45544 | opp_overlap 19943, overlap 19951 19952 GTTGATCAATTAAAA CAGT AAC ACTG TAATATACAAAGCTA BRE_12 21195 - 20338 - | hypothetical protein TERM 19 21218 - 21206 - H 79 -3.5 -5.72622 | opp_overlap 21211 CTCATAAATAAAAAA TAAAT TTA ATTTA AGATTAACTTGTATT BRE_13 21315 - 22091 + | hypothetical protein TERM 20 22486 - 22471 - g 89 -6.2 -5.42198 | TCTCAAAAAACAAAA TCAAGA TAAA TCTTGA TAAAAAAATTTCAAA BRE_14 22095 - 23087 + | hypothetical protein TERM 21 23133 - 23172 + G 77 -5.3 -5.00616 | opp_overlap 23134, overlap 23134 AATAAAGGTCATGAG ACTTTCTAGTTTTTT AAAAAATAAA AAAAAACTAGAAAGA TTTTTTACACAAAGA TERM 22 23134 - 23171 + G 76 -8.8 -3.60048 | opp_overlap 23134, overlap 23133 ATAAAGGTCATGAGA CTTTCTAGTTTTTT AAAAAATAAA AAAAAACTAGAAAG ATTTTTTACACAAAG TERM 23 23171 - 23134 - g 71 -8.8 -2.82234 | opp_overlap 23134 23133 ATAAAGGTCATGAGA CTTTCTAGTTTTTT AAAAAATAAA AAAAAACTAGAAAG ATTTTTTACACAAAG BRE_15 23080 - 23469 + | holo-acyl-carrier protein synthase TERM 24 24229 - 24203 - g 72 -3.6 -5.33026 | TAATTGAAATAAAAA CCCTTCTGTCTA AAA TAGCCGGAATGG GAAAATCATCAAAAG BRE_16 23473 - 24321 + | hypothetical protein hisT 24322 - 25059 + | pseudouridylate synthase I BRE_18 25052 - 25621 + | hypothetical protein priA 25614 - 27590 + | primosomal protein N udk 28207 - 27587 - | uridine kinase glpE 28589 - 28200 - | GlpE protein (GlpE) TERM 25 29478 - 29468 - g 73 -5.4 -4.68846 | ACCAATAAATTAAAA GTAG CAG CTAC ACTACTTGAAGGTAA BRE_22 28718 - 29683 + | hypothetical protein BRE_23 30660 - 29680 - | ribosomal large subunit pseudouridine synthase D BRE_24 31167 - 30661 - | hypothetical protein pfpB 32839 - 31175 - | pyrophosphate--fructose 6-phosphate 1-phosphotransferase,beta subunit queA 33967 - 32909 - | S-adenosylmethionine-tRNA ribosyltransferase-isomerase (queuine synthetase) ruvB 34973 - 33951 - | Holliday junction DNA helicase ruvA 35616 - 35026 - | Holliday junction DNA helicase BRE_29 36430 - 35699 - | hypothetical protein folD 37372 - 36431 - | methylenetetrahydrofolate dehydrogenase BRE_31 37501 - 38136 + | hypothetical protein BRE_32 38144 - 39175 + | hypothetical protein BRE_33 39592 - 39161 - | hypothetical protein lepB-1 40217 - 39582 - | signal peptidase I TERM 26 39635 - 39625 - G 76 -4 -5.5112 | overlap 39634 TTCAGCAATAAAAAA GATA AAA TATC AGCCTGTCCCACAGG TERM 27 40109 - 40097 - G 74 -4.9 -5.0925 | opp_overlap 40097 CTTGAAAAGTAAAAA TTTGT AAA ACAAA TTTTGTAACAAAATA TERM 28 40122 - 40110 - G 70 -4.9 -4.66535 | opp_overlap 40110 AATTTGTAAAACAAA TTTTG TAA CAAAA TAATTAGATAGCAAA lepB-2 41198 - 40218 - | signal peptidase I BRE_36 41400 - 42872 + | hypothetical protein TERM 29 43309 - 43292 - g 77 -4.9 -5.25656 | AAAAGTATCAAAAAA GATCTCA GTCG TGAAATC AAACAATATAAATAA smpB 42875 - 43324 + | SsrA-binding protein BRE_38 44083 - 43481 - | hypothetical protein parC 45987 - 44104 - | DNA topoisomerase IV TERM 30 44789 - 44801 + g 70 -6.3 -4.10855 | TCAAACATACTTATT TTCCT AAT AGGAA TTTTAAGCAAGTTTT parE 47783 - 45987 - | DNA topoisomerase IV plsC 48547 - 47795 - | 1-acyl-sn-glycerol-3-phosphate acyltransferase BRE_42 50015 - 48555 - | putative lipoprotein BRE_43 51586 - 50078 - | hypothetical protein cheR-1 51775 - 52647 + | chemotaxis protein methyltransferase TERM 31 52646 - 52632 - T 73 -3.6 -5.29385 | AATTCAATTAAAAAA CAATCA TAA TGATTA AATAAATAAAAGAAT phoU 53358 - 52681 - | phosphate transport system regulatory protein BRE_46 54414 - 53365 - | hypothetical protein BRE_47 54797 - 54411 - | hypothetical protein BRE_48 57290 - 54825 - | P115 protein TERM 32 56083 - 56103 + g 78 -2.7 -5.86332 | opp_overlap 56074 56085, overlap 56074 56085 AATGTATCTTCAAAC AATTTTAAA GAA TTTAAAATG TTTTTTTTAAGTTGC TERM 33 56085 - 56101 + g 70 -5.3 -4.56715 | opp_overlap 56074 56085, overlap 56074 56083 TGTATCTTCAAACAA TTTTAAA GAA TTTAAAA TGTTTTTTTTAAGTT TERM 34 56596 - 56585 - G 71 -4.4 -4.88228 | opp_overlap 56585 AGTTAAGATTAAAAA GCTT CTTC AAGC TTAAATTTTTATCCA TERM 35 57491 - 57481 - g 82 -5.4 -5.50723 | TTACCAAAACAAAAA GAGA ATA TCTC TCATCATTAATACTA rnhB 57348 - 57893 + | ribonuclease H BRE_50 58267 - 57974 - | hypothetical protein BRE_53 58999 - 59709 + | hypothetical protein BRE_54 59754 - 60449 + | hypothetical protein spoU 61080 - 60424 - | spoU protein TERM 36 60584 - 60567 - G 70 -6.3 -4.11503 | TTAAAGAATAAAAGA CTATAGC TACA GCTACAG AGAGATTATAACTTT TERM 37 61383 - 61417 + G 75 -8.6 -3.34344 | opp_overlap 61374 61393 61396, overlap 61395 61396 ACAAGATCCATACCA CGGAAAAGGACAAGCC AAT GGTTTGGCATTTTCTG TTAATTCAGACATCA ung 61174 - 61845 + | uracil DNA glycosylase BRE_57 62265 - 61903 - | preprotein translocase SecG subunit TERM 38 62107 - 62086 - G 70 -2.3 -5.54885 | AAGAGTAATAAAAAA TGCTGTAAT TTTT ATTGCAACA CTTGAAGATCTTGCC tpi 63035 - 62271 - | triosephosphate isomerase (TIM) pgk 64215 - 63037 - | phosphoglycerate kinase TERM 39 64147 - 64125 - G 90 -10.7 -3.23692 | TAGTATCATCAGTAA TGTTCCCTT CTCGT AAGGGAACA TTAAAATCACATCTA gap 65252 - 64245 - | glyceraldehyde 3-phosphate dehydrogenase (GAPDH) BRE_61 67310 - 65325 - | hypothetical protein tlyC 68086 - 67307 - | hemolysin TERM 40 68087 - 68075 - G 71 -2.7 -5.46698 | overlap 68076 TTTAAAATTAAAAAA CTTGA ACA TCAAA ATACCCTTCTGGTTT BRE_63 68529 - 68083 - | hypothetical protein TERM 41 68262 - 68286 + g 70 -6.6 -3.92414 | gap 1, opp_overlap 68260, overlap 68260 TAAACTCCAAATATT CAAGG-GATAT GACA ATATCTCCTTG TATTTTATGATTTAT trxA 68969 - 68616 - | thioredoxin BRE_65 69047 - 69766 + | hypothetical protein TERM 42 69773 - 69803 + T 100 -14.4 -3.05844 | opp_overlap 69773, overlap 69775 AATGATTAATAATAA TATCTTTATACATT GAA AATGTATAAAGATA TATTAAACTCAAAAA TERM 43 69803 - 69773 - T 100 -14.4 -4.01047 | opp_overlap 69773 69775 AATGATTAATAATAA TATCTTTATACATT GAA AATGTATAAAGATA TATTAAACTCAAAAA TERM 44 69775 - 69801 + T 100 -12.6 -3.08813 | opp_overlap 69773, overlap 69773 TGATTAATAATAATA TCTTTATACATT GAA AATGTATAAAGA TATATTAAACTCAAA BRE_66 70895 - 69840 - | hypothetical protein TERM 45 69898 - 69884 - G 70 -6.4 -4.24745 | opp_overlap 69884 TATCATGAATATAAA GCTCAA CTG TCGAGC CTTTTACTGCCTCAT TERM 46 70642 - 70599 - G 72 -6.2 -4.28361 | opp_overlap 70599 70612, overlap 70604 CGAAGTTGATGAAAA CTTAAGTTCAACATAAGGAA TTAA TTCTTTATGTTGAAGCTCAG TAATTGCCTCTTCAA fmt 71852 - 70923 - | methionyl-tRNA formyltransferase def 72346 - 71849 - | polypeptide deformylase BRE_69 73069 - 72374 - | hypothetical protein BRE_70 74844 - 73066 - | peptidase, putative TERM 47 74866 - 74882 + H 71 -6.7 -3.9941 | AAGCTCCTTAGGATT TAAAAAG TAA CTTTTTA TTTAATTATAACAAA BRE_71 74968 - 75861 + | hypothetical protein BRE_72 75875 - 77113 + | aminopeptidase II BRE_73 77138 - 77611 + | hypothetical protein TERM 48 78271 - 78255 - g 71 -4.5 -4.88258 | AAAATTATAACAAAA TATATCT AAA AGACATA GGATTTACAGTATTA TERM 49 78713 - 78727 + G 70 -5.8 -4.38712 | CCAAATATTGTAGGT TATATG TAT CATATA TTTTATCAAAATGAA TERM 50 78992 - 78976 - g 100 -4.5 -6.15536 | AATTAATAAAAAAAA TGAACAA ACA TTATTCA CTCTCTCATTGCCAT BRE_74 77639 - 79105 + | hypothetical protein TERM 51 80035 - 79998 - g 71 -3.9 -5.1383 | gap 1, overlap 80000 80001 AATAATAGACAAAAA TATTGATTTAAAAAAATA TGA TATTTTTTTAAAT-AATC CAACAAATAAGATAA TERM 52 80033 - 80000 - g 70 -6.5 -4.16832 | gap 1, overlap 79998 80001 TAATAGACAAAAATA TTGATTTAAAAAAATA TGA TATTTTTTTAAAT-AA TCCAACAAATAAGAT TERM 53 80033 - 80001 - g 70 -8.1 -3.08472 | overlap 80000 79998 AATAGACAAAAATAT TGATTTAAAAAAATA TGA TATTTTTTTAAATAA TCCAACAAATAAGAT TERM 54 80064 - 80054 - g 74 -4 -5.23765 | CAAATAAGATAAAAA TAGA TAA TCTA AATGTACCTATCACA TERM 55 80606 - 80616 + G 91 -4 -6.02919 | TGGCAATATTTTTTA CATT TTT AATG TTTTTTTATTTCTCA BRE_75 79105 - 81420 + | hypothetical protein TERM 56 81517 - 81501 - g 78 -4.5 -5.38839 | GATATAAAAATAAAA GATAATA AAA CATTATC AAAAAAATATCTAAC TERM 57 81589 - 81601 + G 70 -4.9 -4.63952 | ATATTTATAAACTAT TTGTA GAA TACAA TTTATTATTTATAAT BRE_76 81417 - 81989 + | hypothetical protein prfB 82023 - 83066 + | peptide chain release factor RF-2 TERM 58 83093 - 83057 - g 72 -4.8 -4.87318 | opp_overlap 83063 83067 CCTAAAATGGAAAAA TTTAAATTAATAATAA TCATG TTATTATCAATTTCAA CGACTAAACTAGCAT TERM 59 83108 - 83132 + G 70 -8.7 -2.69195 | opp_overlap 83110 83112, overlap 83107 83110 ACGACTAAACTAGCA TATACTCAAAG TAA CATTGAGTATA GATTTTCTTATATCA BRE_78 83048 - 84457 + | hypothetical protein TERM 60 84882 - 84835 - g 70 -2.9 -5.33921 | gap 1, overlap 84843 AAATGAAGGAAAAAA TGTACTAATTGCTGCAGC AGACACATTCAGA GCTGCAGCAATC-GAACA ACTTAAAATACAAAG ftsY 84509 - 85354 + | signal recognition particle-docking protein BRE_80 85351 - 86406 + | hypothetical protein TERM 61 87326 - 87309 - g 84 -5.7 -5.36965 | opp_overlap 87309, overlap 87279 TAAGAGCACAAAAAA TTAGAAA AGTT TTTCTAA TTCATTCAGTAGTAA BRE_81 86393 - 87643 + | lipoprotein releasing system, permease protein, putative BRE_82 87644 - 88333 + | ABC transporter, ATP-binding protein TERM 62 88866 - 88853 - g 70 -3.1 -5.34055 | ATAAATATCAAAAAA TACTC CCCA GAGCA CAAAAATTTACCATA BRE_83 88330 - 89580 + | ABC transporter, permease protein BRE_84 90887 - 89601 - | hypothetical protein BRE_85 91197 - 90880 - | hypothetical protein TERM 63 91619 - 91609 - g 74 -4 -5.28561 | opp_overlap 91609, overlap 91603 91610 AAGAGACAAGAAAAA TTGT TAA ACAA TTTATCAATGCAGAA TERM 64 92194 - 92177 - g 71 -2.8 -5.38047 | overlap 92184 92185 TATTTATATAAAAAA TGAAAA ACTTGA TTTTCA AACTATCAATTCCCC nifS 91362 - 92630 + | nifS protein TERM 65 92629 - 92611 - f 76 -4 -5.47218 | opp_overlap 92614, overlap 92623 CTTCACTTAAAAAAA CAATAAAA GAA TTTTATTA AATAAACTTACAAAC BRE_87 92776 - 93171 + | hypothetical protein TERM 66 93451 - 93432 - gT 79 -9.4 -3.20063 | overlap 93436 AAAAAAATTGGAACA GCAATTGA TCTC TCAATTGC AACTAGCATTATAAG BRE_88 93126 - 94733 + | magnesium chelatase family protein TERM 67 94751 - 94738 - T 100 -9.5 -5.68489 | TAGAAGAATAAAAAA GCCCC AATT GGGGC AAAATTAAAATTTTA ldh 95718 - 94756 - | L-lactate dehydrogenase lepA 97563 - 95896 - | GTP-binding membrane protein TERM 68 96700 - 96733 + g 95 -11.9 -3.77666 | opp_overlap 96698 ATGGCCAAGAGCAGC TGATGCATCTTTTTC AAAA GTAAGAGATGCATCA TTTAGCTTAAGTCTA BRE_91 98746 - 97742 - | hypothetical protein TERM 69 98303 - 98277 - G 71 -8.2 -3.21593 | overlap 98275 98279 98298 TATTTTTGCACAATA TAGTGATAATTA TAA TAATCATCACCA CGTGAAAATTTACTT TERM 70 98301 - 98279 - G 74 -8.6 -3.17146 | overlap 98277 98275 98298 TTTTTGCACAATATA GTGATAATTA TAA TAATCATCAC CACGTGAAAATTTAC TERM 71 98769 - 98729 - G 100 -13.7 -3.97602 | opp_overlap 98733 98738, overlap 98731 98738 TAACATATTCATAAA TATATTAAATTTTCTCACA AAT TGCGAGAAAATTTAATATC TGAATATTTGAGTTT TERM 72 98767 - 98731 - G 100 -16.3 -3.5697 | opp_overlap 98733 98738, overlap 98729 98738 ACATATTCATAAATA TATTAAATTTTCTCACA AAT TGCGAGAAAATTTAATA TCTGAATATTTGAGT TERM 73 98733 - 98765 + g 95 -12.3 -2.96638 | opp_overlap 98731 98729 98738, overlap 98738 ATATTCATAAATATA TTAAATTTTCTCACA AAT TGCGAGAAAATTTAA TATCTGAATATTTGA TERM 74 98738 - 98760 + g 75 -7.8 -3.89212 | opp_overlap 98731 98729 98738, overlap 98733 CATAAATATATTAAA TTTTCTCACA AAT TGCGAGAAAA TTTAATATCTGAATA TERM 75 98760 - 98738 - G 91 -10 -3.98915 | opp_overlap 98738 98733, overlap 98731 98729 CATAAATATATTAAA TTTTCTCACA AAT TGCGAGAAAA TTTAATATCTGAATA atpK 99217 - 98783 - | V-type ATPase, subunit K TERM 76 98871 - 98857 - G 81 -7.2 -4.67641 | opp_overlap 98859, overlap 98870 ATCCCAAAACTAAAA GATTTG TTG CAAATC CCTTGCCAGTCTCAG atpI 101072 - 99237 - | V-type ATPase, subunit I atpD 101673 - 101077 - | V-type ATPase, subunit D atpB 102983 - 101676 - | V-type ATPase, subunit B TERM 77 102011 - 101998 - G 73 -8.1 -3.36569 | opp_overlap 101997, overlap 101996 TTAAGTCTTGAAAGA GAGCC AAAA GGCTC AATTCTGCCTCTCCT atpA 104717 - 102987 - | V-type ATPase, subunit A BRE_97 105273 - 104728 - | uncharacterized conserved motif-containing protein atpE 105879 - 105283 - | V-type ATPase, subunit E BRE_99 106381 - 105986 - | hypothetical protein TERM 78 107495 - 107511 + r 70 -8.1 -3.1634 | opp_overlap 107494 107492 107495 AAATTCATCAAATAT CAAAAGA CTA TCTTTTG TTGCATGCTTTAAAA BRE_101 109630 - 108689 - | hypothetical protein murI 110391 - 109627 - | glutamate racemase asnS 110510 - 111895 + | asparaginyl-tRNA synthetase TERM 79 111911 - 111873 - f 87 -10.6 -3.63991 | opp_overlap 111882, overlap 111874 111882 TACCATTTCCAAGAA CTCCAAAAACTCTTCATT TCT AATAAAGAGTTTTCGAAA GGAGAAAAACATTGC TERM 80 111910 - 111874 - f 87 -11.9 -2.78073 | opp_overlap 111882, overlap 111873 111882 ACCATTTCCAAGAAC TCCAAAAACTCTTCATT TCT AATAAAGAGTTTTCGAA AGGAGAAAAACATTG TERM 81 111902 - 111882 - f 81 -7.7 -4.70626 | opp_overlap 111882, overlap 111874 111873 CAAGAACTCCAAAAA CTCTTCATT TCT AATAAAGAG TTTTCGAAAGGAGAA BRE_104 111923 - 112471 + | hypothetical protein TERM 82 112463 - 112479 + T 70 -2.3 -5.52384 | opp_overlap 112463 112474 TTAGAATATATTAAG CTTGAAT AGA ATTAAAG TTTTTTTGATAAAAA TERM 83 112500 - 112474 - T 79 -8.3 -3.67498 | opp_overlap 112463 112479, overlap 112463 112479 TAAGCTTGAATAGAA TTAAAGTTTTT TTGAT AAAAACTTTAA AATATCCAATAATTC BRE_105 113064 - 112474 - | hypothetical protein htrA 114871 - 113414 - | periplasmic serine protease DO map 115664 - 114912 - | methionine aminopeptidase BRE_108 117318 - 115669 - | hypothetical protein nusB 117745 - 117305 - | N-utilization substance protein B BRE_110 118774 - 117764 - | basic membrane protein fadA 120058 - 118865 - | acetyl-CoA C-acetyltransferase BRE_112 120249 - 121604 + | hypothetical protein dnaB 123039 - 121645 - | replicative DNA helicase TERM 84 122063 - 122052 - G 70 -3 -5.2204 | TATAATCAACAAAAA GTAT ATCT ATAC CTGAAAATCTTTTAA rplI 123552 - 123058 - | 50S ribosomal protein L9 rpsR 123856 - 123566 - | 30S ribosomal protein S18 ssb 124309 - 123869 - | single-stranded DNA-binding protein rpsF 124725 - 124321 - | 30S ribosomal protein S6 BRE_120 129324 - 128044 - | zinc protease, putative cdsA 130306 - 129341 - | phosphatidate cytidylyltransferase uppS 130886 - 130194 - | undecaprenyl diphosphate synthase frr 131445 - 130891 - | ribosome releasing factor tsf 132319 - 131483 - | translation elongation factor EF-TS TERM 85 131539 - 131553 + g 77 -2.9 -5.63517 | TACTTAAAATCAACT TAGAA ACCTC TTCTA TTTTTTCTTTAACAG rpsB 133105 - 132341 - | 30S ribosomal protein S2 maf 133740 - 133141 - | maf protein BRE_127 134008 - 133730 - | hypothetical protein BRE_128 134696 - 134022 - | hypothetical protein TERM 86 134821 - 134837 + r 70 -5.2 -4.62302 | ACAAATCAAATTATT TAAGCT GAAAA AGCTTA TTTTTAGCAATATTA BRE_129 135418 - 134816 - | hypothetical protein rpsA 137078 - 135411 - | 30S ribosomal protein S1 cmk 137742 - 137086 - | cytidylate kinase BRE_132 138485 - 137739 - | pseudouridylate synthase BRE_133 139230 - 138457 - | hypothetical protein TERM 87 138849 - 138867 + gr 82 -9 -3.75535 | opp_overlap 138849 138848 138846 TTAAAAAGACAACAT TTTCCTTT AAA AAAGGAAA TTTAGATATATCTAA TERM 88 138867 - 138849 - GR 73 -9 -2.76384 | opp_overlap 138849, overlap 138848 138846 TTAAAAAGACAACAT TTTCCTTT AAA AAAGGAAA TTTAGATATATCTAA greA 143043 - 140341 - | transcription elongation factor EF TERM 89 140671 - 140689 + g 100 -10.4 -5.10933 | CTGTTGTCTCTCTTT TGCAGAAT GAT ATTCTGCA TTTTCTTTTAAATCA TERM 90 141324 - 141306 - G 73 -4.6 -5.01845 | CATAACAAGGAAAAA GCTGCTTA TAA TAAACAAC CCAATCAACCAATTC TERM 91 142127 - 142115 - G 71 -4.1 -5.02323 | TGATGATAAACAAAA TTGCC CTT AGCAA AAAACAAGTATTTTT TERM 92 142560 - 142535 - G 71 -2.7 -5.40072 | opp_overlap 142537, overlap 142537 142539 142559 GCCTTTCTAAAAAAA TATATTGATTT TTGC AAATCAACATT CTCATAATGAGTAGC BRE_136 144023 - 143079 - | hypothetical protein TERM 93 144932 - 144916 - g 84 -3.7 -5.75538 | overlap 144917 TTCAAAAAATAAAAA GCCATTT AAA AAATGGT AAAGACAATTTTGCA TERM 94 144931 - 144917 - g 72 -7.2 -4.02882 | overlap 144916 TCAAAAAATAAAAAG CCATTT AAA AAATGG TAAAGACAATTTTGC BRE_137 144210 - 145355 + | hypothetical protein hisS 146765 - 145395 - | histidyl-tRNA synthetase pbp-1 146905 - 148785 + | penicillin-binding protein BRE_140 150676 - 148787 - | long-chain-fatty-acid CoA ligase TERM 95 149600 - 149613 + g 71 -2.5 -5.47218 | AACAAAATTATTGCC TAAAA CTTT TTTTA TTTTTTTAAATACAA TERM 96 150006 - 149994 - G 71 -7.7 -3.51708 | GACCTTTGAAATGAA TGCCA AAT TGGCA AAATACACATAAATA BRE_141 151185 - 150892 - | hypothetical protein acrB 154437 - 151198 - | acriflavine resistance protein TERM 97 151366 - 151339 - G 90 -5.8 -5.56264 | opp_overlap 151342 151345, overlap 151342 151361 TTTAAAGACAAAAAA GAAGAATTTTAT CAAA ATAAAATTCTTT ATAGAAAACTTAGAA TERM 98 151363 - 151342 - G 88 -7.5 -4.8277 | opp_overlap 151342 151345, overlap 151339 151361 AAAGACAAAAAAGAA GAATTTTAT CAAA ATAAAATTC TTTATAGAAAACTTA TERM 99 151342 - 151363 + g 73 -7.5 -3.86822 | opp_overlap 151342 151339 151361, overlap 151345 AAAGACAAAAAAGAA GAATTTTAT CAAA ATAAAATTC TTTATAGAAAACTTA TERM 100 151396 - 151385 - G 71 -4.4 -4.97402 | GAAAACTTAGAAAAA GCTT CAAA AAGC ATAGGAATAAAAAGC TERM 101 154027 - 154009 - G 71 -2.5 -5.47431 | TGAATACATAAAAAA TGATATT ACTGG AATACCA TCTAAACGATCTCTA mtrC 155247 - 154441 - | membrane fusion protein BRE_144 156794 - 155427 - | hypothetical protein TERM 102 156735 - 156723 - GH 73 -3.5 -5.27476 | opp_overlap 156723 156734 TTTAATAAAATAAAA TAAAA TAT TTTTA TTAATAATTAATATA hlyA 156784 - 157086 + | alpha-hemolysin proX 157971 - 157075 - | glycine betaine/L-proline transport system substrate-binding protein; lipoprotein proW 158907 - 158008 - | glycine betaine/L-proline transport system permease protein TERM 103 158509 - 158534 + g 73 -8.5 -3.04517 | gap 1, opp_overlap 158505, overlap 158508 158511 ATAAACAAATGGAGG CATTGCTTGCAT CAA AT-CAAGCAATG GTTTTAAAAAAACAT proV 160032 - 158914 - | glycine betaine/L-proline transport system ATP-binding protein TERM 104 159164 - 159139 - G 95 -10.7 -3.98762 | overlap 159158 159161 AATGATAACATTAAA TTGATCATTAT ATCC ATAATGATCAA AATCAACTTTGATAA TERM 105 159320 - 159308 - G 72 -6.3 -4.37886 | opp_overlap 159307 CCATCTCTCATAAAA GCAAT TCT ATTGC CTAATTTAAAAGCCT TERM 106 160142 - 160119 - R 100 -9.7 -5.42975 | opp_overlap 160122 TGACACAAATAAAAA TAAGGGTCT TCTAAC AGACCCTTA TTAAAAAATCAAATT flaB 161164 - 160157 - | flagellar filament 41 kDa core protein TERM 107 160243 - 160257 + g 72 -7.2 -3.91027 | overlap 160248 TCAAAATACTGTTTG TTGTAG ATG CTACAA TTTCATCTGTCATTG TERM 108 161208 - 161225 + r 82 -8.5 -3.90316 | TAATTTTGATGTTTT CGACAAA TCCA TTTGTCG TCTTTTTAAAAGGAT TERM 109 161276 - 161262 - R 80 -2.2 -6.04419 | AAAACAAGAAAAAAA TAAATA CAA TATTCA TTTAAATTAAATTTG fliD 163292 - 161292 - | flagellar hook-associated protein 2 TERM 110 163393 - 163382 - H 72 -3 -5.30348 | AGCCAATAATAAAAA TCTA ATTT TAGA TATAAATAACAAATA TERM 111 163435 - 163403 - H 83 -8.7 -4.18674 | opp_overlap 163407 163410 163432, overlap 163407 TTTAGATATAAATAA CAAATAAGTATCTTT AAA AAAGATCCTTATTTA TAGTAAAATTTAAGT TERM 112 163407 - 163431 + H 74 -7.3 -3.98236 | opp_overlap 163403 163407, overlap 163410 GATATAAATAACAAA TAAGTATCTTT AAA AAAGATCCTTA TTTATAGTAAAATTT TERM 113 163431 - 163407 - H 81 -7.3 -4.65458 | opp_overlap 163407 163410, overlap 163403 GATATAAATAACAAA TAAGTATCTTT AAA AAAGATCCTTA TTTATAGTAAAATTT nagA 163467 - 164672 + | N-acetylglucosamine-6-phosphate deacetylase nagB 164672 - 165508 + | glucosamine-6-phosphate isomerase sodA 166275 - 165664 - | superoxide dismutase secA 168999 - 166291 - | preprotein translocase SecA subunit TERM 114 168829 - 168840 + g 70 -3 -5.20783 | CTTACCACTCTGAAG TTCA TTTT TGAA TTTTTCTGTTTCCCT TERM 115 169493 - 169475 - g 75 -7.6 -4.05747 | opp_overlap 169475 CATACTCTACACAAA TCTTTATT CTA AATAAAGA TTCATCTGTAGCAAT TERM 116 169981 - 169967 - g 75 -3.6 -5.55855 | TTCAAAAAAATAAAA TAATAG CAT CTACTA ATATGAAAAATTTAT BRE_155 169051 - 170184 + | putative lipoprotein BRE_156 170206 - 170631 + | hypothetical protein BRE_157 170635 - 171051 + | hypothetical protein TERM 117 171817 - 171803 - g 70 -8.6 -2.77161 | opp_overlap 171803, overlap 171800 AAAATTTTAACATGA TAAGGC CAG GCCTTA TTTTATACGGATATC TERM 118 171803 - 171817 + G 83 -8.6 -4.39426 | opp_overlap 171803 171800 AAAATTTTAACATGA TAAGGC CAG GCCTTA TTTTATACGGATATC alr 171145 - 172257 + | alanine racemase BRE_159 173934 - 172249 - | hypothetical protein BRE_160 173918 - 174085 + | hypothetical protein BRE_161 175847 - 174090 - | hypothetical protein TERM 119 174664 - 174686 + g 70 -7.8 -3.41291 | overlap 174663 ATCTTCTCAAGACCC TCTTCTGTAA AAA TAACAGAAGA ATTTTTACCATTATT BRE_162 176900 - 175923 - | Na+/Ca+ exchange protein TERM 120 176606 - 176592 - G 72 -3.6 -5.20781 | overlap 176593 CATCATAAAAGAAAA CTTAAG TCT CTTAAA ATCCGTTTTTATTTT BRE_163 178790 - 176925 - | hypothetical protein TERM 121 177618 - 177631 + g 78 -2.4 -5.7946 | TTTTACAACATTACT CCAA GGACGA TTGG TTTTTTTATTCCAAA TERM 122 181243 - 181208 - g 76 -7 -4.41633 | CATCTGGAAAAATAA TCTCCATTGAATTACC AAAT GATAACACAATAGAGA ATGAAATTAAGGAAT tpn50 180493 - 181650 + | outer membrane protein BRE_166 182037 - 181654 - | DnaK suppressor TERM 123 181803 - 181821 + g 80 -5.4 -5.20328 | opp_overlap 181803 AAATCCGATAAAGAG CTTGATTT ATT AAATTAAG TTTCTTTTTTTCAAC infA 182206 - 182427 + | translation initiation factor IF-1 TERM 124 182446 - 182428 - T 76 -6.2 -4.61353 | overlap 182425 TACAGAGAAAAATAA TTTTTTAT GTA ATAAAAAA CTGAAATTCAAAAAT BRE_168 184514 - 182472 - | hypothetical protein TERM 125 183354 - 183372 + gT 78 -2.5 -5.79526 | ATTAAAATCTAATAA TAATTCT TGATT AGAGTTA TTTTTTTTAAACTCT BRE_169 185050 - 184463 - | hypothetical protein BRE_170 186021 - 185032 - | hypothetical protein BRE_171 187043 - 186018 - | hypothetical protein TERM 126 186088 - 186078 - GR 87 -2.6 -6.15536 | AATTAATAAAAAAAA TATT ACC AATA AAAATTCATTATAAA BRE_172 187914 - 187006 - | hypothetical protein TERM 127 187082 - 187054 - GR 70 -8.3 -2.62977 | opp_overlap 187053, overlap 187053 187052 187077 187080 TTCAAAATTAAAAGC CGCCTTTTTTAAA TCA TTTAAAACAAGCG ATAAATTATCCCCCG BRE_173 188798 - 187911 - | hypothetical protein moxR 189798 - 188806 - | methanol dehydrogenase regulator gidB 190500 - 189868 - | glucose inhibited division protein B TERM 128 189908 - 189930 + g 80 -5.7 -5.06089 | AGGAAATATCTCTCT TTATCAGAA ATCAC TTCTGATGA TTTTATTTCTACTTT gidA 192377 - 190497 - | glucose inhibited division protein A TERM 129 192004 - 192021 + g 71 -7.1 -3.8397 | opp_overlap 192004 AAATCACTAACAGTA TCTTGAA AAAG TTCAAGA TTATTCTGCATCTCT thdF 193756 - 192362 - | thiophene and furan oxidation protein BRE_178 193895 - 194389 + | putative flagellar protein TERM 130 195890 - 195877 - g 77 -5.3 -5.00884 | ATCTCCTCTAAAAAA TCCAT CAGC ATGGA TTAGAATATCTAAAG flgK 194408 - 196291 + | flagellar hook-associated protein TERM 131 196386 - 196376 - g 71 -4 -5.16681 | opp_overlap 196376 GTAAAAATAACAAAA CTTT TAG AAAG TTTATACCAAGGTGG TERM 132 197018 - 196998 - g 79 -9.7 -3.3062 | opp_overlap 196995 TTGAAATAGTATTAA CAGCAGGAG ATA CTGCTGCTG ACATTATCGCCAAAA flgL 196295 - 197569 + | flagellar hook-associated protein 3 BRE_181 197571 - 197963 + | hypothetical protein TERM 133 198036 - 198011 - g 70 -8.5 -2.66723 | overlap 198010 AGCATTAAAATAGAC TCTAATATCGA AATT TCAATATTAGA AATAAAAAAAGATAG csrA 197966 - 198202 + | carbon storage regulator BRE_183 198876 - 198187 - | hypothetical protein BRE_184 199258 - 198830 - | hypothetical protein BRE_185 199554 - 199255 - | hypothetical protein rplT 200067 - 199720 - | 50S ribosomal protein L20 TERM 134 199993 - 200006 + g 75 -5.3 -4.90525 | overlap 199995 ACTTTTTTTAGTACC CCAAA AACC TTTGG TTTTCTTTAAAATTC rpmI 200285 - 200088 - | 50S ribosomal protein L35 infC 200868 - 200308 - | translation initiation factor IF-3 TERM 135 201155 - 201172 + G 74 -2.1 -5.57396 | gap 1, opp_overlap 201157, overlap 201156 201157 CATATGCAATGTCAA TA-TTGCT TGC AGCAACTA TTTTTTCTTCATTAT BRE_189 201046 - 201708 + | hypothetical protein BRE_190 201708 - 202454 + | hypothetical protein BRE_191 203344 - 202547 - | Tatd, Mg-dependent DNase BRE_192 204483 - 203341 - | hypothetical protein prfA 204782 - 205861 + | peptide chain release factor A BRE_194 205872 - 206705 + | HemK family methylase TERM 136 206813 - 206803 - g 78 -2.6 -5.83822 | GACATTCAAAAAAAA TTAA TAT TTAA ATCTCTTGAAATATC TERM 137 207232 - 207212 - g 81 -8.4 -4.22375 | opp_overlap 207211, overlap 207209 ATCGAAGAGAAAGAA TTGCAAGA GATTG TCTTGCAA CTTACGTACCAATTG TERM 138 208243 - 208232 - g 82 -4.4 -5.74288 | opp_overlap 208232 ATAAAGAACAAAAAA GACT ATTT AGTC TATTTAAATCTCTAA spoT 206689 - 208692 + | guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase BRE_196 208682 - 210925 + | hypothetical protein ddlA 212016 - 210922 - | D-alanine--D-alanine ligase murE 213547 - 212021 - | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate TERM 139 212154 - 212167 + g 73 -5.3 -4.74103 | AAATCGTCACTACAT GCAAT ATTT ATTGC TTTTTCAATTGCACA TERM 140 212961 - 212938 - G 73 -7.5 -3.82486 | opp_overlap 212931, overlap 212931 212929 ATTCAATATCAAGAA GCCTTGATG TCCTAT CATCAAGAC CATGAGAAGTTGATT BRE_200 213853 - 215094 + | hemolysin hflK 215219 - 216151 + | Lambda CII stability-governing protein hflC 216152 - 217123 + | Lambda CII stability-governing protein TERM 141 217965 - 217947 - g 76 -3.8 -5.42862 | ACATTTTTAAAAAAA GGAAACGT TTC ACATATCC CAGTTATAAGCAATT TERM 142 218311 - 218259 - g 70 -6.1 -4.17608 | gap 2, overlap 218257 218266 218267 218307 TCTATTCAAAAAATA TTATCAACGATCTATGATTATTTTG GTTTT CAAAA-AATCATAGATCAA-GATAA TCTCCATCATCAAAC TERM 143 218305 - 218266 - g 82 -9.7 -3.35318 | gap 1, overlap 218259 218257 218267 AAAAAATATTATCAA CGATCTATGATTATTTTG GTTTT CAAAA-AATCATAGATCA AGATAATCTCCATCA TERM 144 218304 - 218267 - g 84 -11 -2.59564 | gap 1, overlap 218266 218259 218257 AAAAATATTATCAAC GATCTATGATTATTTTG GTTTT CAAAA-AATCATAGATC AAGATAATCTCCATC TERM 145 218716 - 218679 - g 80 -5.8 -5.06505 | opp_overlap 218680 218682, overlap 218673 218669 218682 AACGATACAGAAAAA CAACTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAGTAT TAATATTTCTAAAAA TERM 146 218680 - 218715 + G 82 -9.3 -3.50335 | opp_overlap 218673 218669 218679 218682, overlap 218682 ACGATACAGAAAAAC AACTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAGTA TTAATATTTCTAAAA TERM 147 218682 - 218713 + G 95 -11.9 -3.32024 | opp_overlap 218673 218669 218679 218682, overlap 218680 GATACAGAAAAACAA CTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAG TATTAATATTTCTAA TERM 148 218713 - 218682 - g 100 -11.9 -4.61353 | opp_overlap 218682 218680, overlap 218673 218669 218679 GATACAGAAAAACAA CTTTTCTCTAAAA TAGAAT TTTTAGAGAAAAG TATTAATATTTCTAA TERM 149 218846 - 218835 - g 85 -3 -6.01369 | opp_overlap 218835 GAAACAACAAAAAAA TTCA CACA TGAA CTTATCAGAATTTTT BRE_204 217821 - 219359 + | hypothetical protein BRE_205 219960 - 219364 - | N6-adenine-specific methylase, putative TERM 150 219402 - 219392 - G 76 -4 -5.47399 | TTAACTTCAAAAAAA TCAA GTC TTGA GCCTCCATATTTTCT TERM 151 219611 - 219593 - G 74 -6.8 -4.32919 | opp_overlap 219593 AAATCATAAAAAAGA TCTCTCTT TGC AAGAAAGA ATTCTGCTTTTGTAA gtaB 219995 - 220825 + | UTP--glucose-1-phosphate uridylyltransferase TERM 152 221115 - 221101 - g 81 -2.2 -5.99154 | overlap 221088 CATTAAAGAAAAAAA TTTACT TCA AATAAA AAAAGAAACTAATCT TERM 153 221136 - 221124 - g 77 -4.9 -5.36181 | AAATAAAAAAAGAAA CTAAT CTT ATTAG CAAAAGACCTGGAAT TERM 154 221516 - 221503 - g 71 -2.5 -5.4756 | AATTTTAACAAAAAA TTATA AATA TATAA TAGATGAAGTTTTAA TERM 155 222111 - 222097 - g 90 -5.8 -5.61881 | overlap 222082 TTTCAAAAATAAAAA TTTTGA AAT TCAAAA TCAAATATTTGTATA BRE_207 220826 - 222541 + | hypothetical protein BRE_208 222591 - 224867 + | hypothetical protein TERM 156 225948 - 225920 - g 78 -7.5 -4.39989 | opp_overlap 225925, overlap 225925 225939 225942 ACCAAACTAGTAAAA GACAAGCTCCTTT GGA AAAGGAGCTTTTA AAACAAAAACTTCCT TERM 157 225943 - 225925 - g 100 -11.8 -4.00084 | opp_overlap 225925, overlap 225920 225939 225942 ACTAGTAAAAGACAA GCTCCTTT GGA AAAGGAGC TTTTAAAACAAAAAC TERM 158 225925 - 225943 + G 100 -11.8 -4.07568 | opp_overlap 225925 225920 225939 225942 ACTAGTAAAAGACAA GCTCCTTT GGA AAAGGAGC TTTTAAAACAAAAAC TERM 159 225970 - 225958 - g 76 -4.1 -5.45802 | overlap 225939 CTTTTAAAACAAAAA CTTCC TAT AGAAG AAATTCCACCCATAA lmp1 224860 - 227205 + | surface-located membrane protein 1 TERM 160 227910 - 227896 - g 75 -5.8 -4.68994 | ATGATCATGTAAAAA TGAAAA TAT TTTTCA CTCCACCTAATTTCT TERM 161 228393 - 228381 - g 70 -4.9 -4.67563 | overlap 228375 GAAGATAAAGTAAAA TTTGA AGG TCAAA TATCACAAAAATACA mutL 227202 - 229037 + | DNA mismatch repair protein BRE_211 229058 - 230098 + | hypothetical protein TERM 162 230197 - 230181 - T 70 -8.7 -2.62396 | overlap 230194 CAGTTGGTTAGAGCA CCCGACT CAT AATCGGG TGGTCCCAGGTTCAA BRE_213 230883 - 230230 - | putative lipoprotein TERM 163 230863 - 230851 - G 84 -3.5 -5.89827 | overlap 230861 AATTATTAAAAAAAA TAATA CTA TATTA AACTTTAACTCTCTC efp 231439 - 230861 - | elongation factor EF-P TERM 164 231227 - 231198 - G 71 -7.3 -3.86816 | opp_overlap 231207, overlap 231187 231196 231199 TCCATAAAAATAAGA CTCTCATTATCTT TATA AAGATATTGAGAA TTAACCTCTAACACT TERM 165 231226 - 231199 - G 71 -8.6 -2.91005 | opp_overlap 231207, overlap 231187 231198 231196 CCATAAAAATAAGAC TCTCATTATCTT TATA AAGATATTGAGA ATTAACCTCTAACAC TERM 166 232316 - 232328 + G 70 -4.9 -4.68724 | opp_overlap 232316 AAGATCAAAATACAC TTGAT TTC ATCAA TTTTATATTAAGTCC pstS 231505 - 232407 + | phosphate ABC transporter, periplasmic phosphate-binding TERM 167 232553 - 232570 + G 74 -8.5 -3.25719 | CTTTTAAATGCTTTA TTGTTGC ATCT GCAACAA TTAGTACTCTAATAA TERM 168 232906 - 232946 + G 76 -8.6 -3.64866 | opp_overlap 232903, overlap 232907 TTTGGAAGCACATTT ATATCTTCTCTTATAAAA AACAC TTTTATAAGAGAAGACAA TTTAGGATATAATCT TERM 169 232907 - 232945 + G 93 -12.1 -2.78438 | opp_overlap 232903, overlap 232906 TTGGAAGCACATTTA TATCTTCTCTTATAAAA AACAC TTTTATAAGAGAAGACA ATTTAGGATATAATC pstC 232495 - 233403 + | phosphate ABC transporter, permease protein TERM 170 233552 - 233541 - g 70 -3 -5.32944 | opp_overlap 233541 TTTACAAGCAAAAAA GAAT CATT ATTC TTAGATGAAACAACA TERM 171 234172 - 234153 - g 88 -9.4 -4.08806 | GTAGAAAAAAATGAA GGTACAAT TGCA ATTGTACC CTGGCATTACTTTTA pstA 233400 - 234938 + | phosphate ABC transporter, permease protein TERM 172 235636 - 235597 - g 86 -10.2 -3.52079 | overlap 235599 GAATATCTGACAGAA CAGCTTTCTTCTTAAATG GATA CATTGAAGAAGAAAGCAA AACAGATGAATTATT TERM 173 235634 - 235599 - g 100 -15 -3.32966 | overlap 235597 ATATCTGACAGAACA GCTTTCTTCTTAAATG GATA CATTGAAGAAGAAAGC AAAACAGATGAATTA pstB 234942 - 235706 + | phosphate transport system ATP-binding protein gufA 236529 - 235708 - | GufA protein alaS 238335 - 236557 - | alanyl-tRNA synthetase fliG-1 239582 - 238335 - | flagellar motor switch protein pgl 240261 - 239557 - | 6-phosphogluconolactonase BRE_223 240970 - 240278 - | hypothetical protein TERM 174 241293 - 241269 - g 74 -8.1 -3.67175 | opp_overlap 241269, overlap 241265 ATGCTGCAAAAGCAA TTGAAATTCTT GAA AAAAATTTCAA TTTTGACGAATATAA TERM 175 241838 - 241826 - g 72 -4.9 -4.90079 | overlap 241830 ATTCCAACAAGAAAA GAAAT ACT ATTTC AAATGGTAGAATATA BRE_224 241040 - 242047 + | tRNA-dihydrouridine synthase A serS 243311 - 242037 - | seryl-tRNA synthetase TERM 176 243391 - 243374 - H 79 -5.7 -4.98128 | opp_overlap 243377, overlap 243377 ATAATGAAAAATAAA TTATACT AATT AGTATAA TAAGTATTATATAAT BRE_226 243439 - 244173 + | putative lipoprotein TERM 177 244847 - 244824 - g 70 -5.4 -4.53163 | opp_overlap 244824 244822 CTATACATTAGAAAA TTGCAAAATA TTTT TATTTGGCAA TATTGATACCAATAA TERM 178 245281 - 245271 - g 73 -5.4 -4.8143 | overlap 245247 CCAAGAACTTAAAAA CCTT GTA AAGG TAAAAATTCCTCAAG TERM 179 245363 - 245350 - g 70 -2.3 -5.4593 | opp_overlap 245350 TTAAAAGAAGAAAAA GGACA AGGT TGGCC TATTAATTTAATGAT BRE_227 244186 - 247104 + | Zn-dependent peptidase, insulinase-like protein rpmE 247377 - 247132 - | 50S ribosomal protein L31 rho 248979 - 247435 - | transcription termination factor TERM 180 247809 - 247793 - G 73 -8.1 -3.41229 | opp_overlap 247793 ATATTTCTAGCAGAA CCAAAAA ATC TTTTTGG TTTATGTAAAGCATT TERM 181 247793 - 247809 + g 78 -8.1 -4.03978 | opp_overlap 247793 ATATTTCTAGCAGAA CCAAAAA ATC TTTTTGG TTTATGTAAAGCATT BRE_230 249473 - 249066 - | hypothetical protein BRE_231 249803 - 249477 - | HbbU protein TERM 182 249731 - 249751 + g 71 -7.1 -3.73402 | CCAACTTTTCATTAT TATTTTTAA TGT TTAAAAATA TTTGATCAACAATAT rpsT 250141 - 249815 - | 30S ribosomal protein S20 BRE_233 250966 - 250145 - | hypothetical protein TERM 183 250755 - 250778 + g 80 -8.4 -4.07246 | opp_overlap 250755 250760, overlap 250761 AAATTAACTTTAAAA CAAAATTTTT TATA AAAAATTTTG TTTCCTTTAAAGTCA TERM 184 250778 - 250755 - G 81 -8.4 -4.2237 | opp_overlap 250755 250761, overlap 250760 AAATTAACTTTAAAA CAAAATTTTT TATA AAAAATTTTG TTTCCTTTAAAGTCA BRE_234 252083 - 250977 - | conserved hypothetical GTP-binding protein TERM 185 251239 - 251224 - G 70 -6.2 -4.25104 | TCTCCTGCAGTAAAA TAGGTT CTTA AACCTA AAGTATAATAAGAAG BRE_235 254171 - 252108 - | hypothetical protein BRE_236 254271 - 255824 + | apolipoprotein N-acyltransferase, putative BRE_237 256564 - 255788 - | hypothetical protein dck 257244 - 256624 - | deoxyguanosine/deoxyadenosine kinase(I) subunit 2 TERM 186 257356 - 257344 - H 79 -3.5 -5.7946 | opp_overlap 257323 257344, overlap 257323 257354 TTTTTAATAAAAAAA TTAAT ATA ATTAA TTTCAAGTTTCTTAA glpF 257950 - 258711 + | glycerol uptake facilitator TERM 187 259149 - 259137 - f 71 -4.9 -4.79451 | AGGGCAAAGACAAAA TTTTC TTA GAAAA AACAGGTCTTGTACT TERM 188 260098 - 260084 - f 90 -10 -4.19324 | opp_overlap 260083 260082, overlap 260081 AAATCACAGAAACAA CAGCTC TTG GAGCTG CATATTTGGCAGGAC glpT 260390 - 261745 + | glycerol-3-phosphate transporter TERM 189 262443 - 262425 - g 93 -9 -4.65153 | opp_overlap 262442 GGATACAAATCAAAA GAAGATAA AAT TTATCTTC AAACATTTGATTTTG TERM 190 262799 - 262820 + G 70 -6.7 -3.89346 | opp_overlap 262799 TGGTCTATTTACAGA CTTTGTTGA TATA TCAATAAAG TTTATGCAATAAAAC glpQ 261831 - 262832 + | glycerophosphoryl diester phosphodiesterase, periplasmic precursor (glycerophosphodiester phosphodiesterase); lipoprotein TERM 191 264027 - 264014 - T 70 -5.3 -4.59511 | AAGATGGCTGAAAAA GCTTT AACA AAAGC AATAAACGAAAATTT TERM 192 264436 - 264457 + T 100 -11.7 -4.89966 | opp_overlap 264436 TTTAATCTAATCAAA GGAGGATAT AGTC ATATCCTCC TTTATTTTTAAATCT TERM 193 264457 - 264436 - T 100 -11.7 -3.95986 | opp_overlap 264436 TTTAATCTAATCAAA GGAGGATAT AGTC ATATCCTCC TTTATTTTTAAATCT BRE_244 265021 - 264527 - | hypothetical protein BRE_245 265562 - 265011 - | hypothetical protein BRE_246 266588 - 265563 - | hypothetical protein TERM 194 267269 - 267251 - g 73 -3.2 -5.55664 | opp_overlap 267255 267256, overlap 267255 TTATTATCAAAAAAA TGGATT TGGATAT AATCCA ATATTTTTAACTACA TERM 195 267256 - 267270 + G 72 -7.2 -3.94812 | opp_overlap 267251 267255, overlap 267255 ATCAAAAAAATGGAT TTGGAT ATA ATCCAA TATTTTTAACTACAA BRE_247 266793 - 267392 + | rdgB/HAM1 protein TERM 196 269146 - 269126 - g 93 -5.5 -5.80727 | AAAAATAATAAAAAA GATGCAACT AAG AATTACATC GACTTTTTAAAAACA pepF 267518 - 269287 + | oligoendopeptidase F TERM 197 269693 - 269708 + G 74 -6.2 -4.53607 | ATTATTTTAGAGGTT TTCCAT CATT ATGGAA TTTTCTAATAATTTT BRE_249 269302 - 270006 + | Phosphatidylserine synthase dedA 270017 - 270631 + | DedA protein TERM 198 270948 - 270937 - g 81 -3 -5.79595 | TTCCAAAAGAAAAAA GAAT CTAT ATTC TTGACATGTTTCCTT TERM 199 271984 - 271968 - g 73 -5.2 -4.75219 | opp_overlap 271968 271973 GAAGTATTAATAAAA CCATTT ACCGA AAATGG TATTTCAATTAACAC TERM 200 272342 - 272329 - g 78 -8.1 -4.05321 | opp_overlap 272337 GAGAAACAAACACAA TGCCC CAAT GGGCA GGCTCATGTTGGTAC TERM 201 272656 - 272640 - g 70 -5.3 -4.62712 | AAAAAAGACAACAAA TTTTTTT CAA AAAAAAA TAATAAAGAACTAAA TERM 202 273294 - 273280 - g 70 -2.2 -5.37865 | TTAATAATCAAAAAA TTATAC AAA ATATAA ACAATAAACAAATAA TERM 203 273321 - 273307 - g 71 -4.4 -4.82212 | TAAACAATAAACAAA TAATAA AAA TTATTA CAGTTAAAGACAAAC leuS 270831 - 273359 + | leucyl-tRNA synthetase TERM 204 273595 - 273585 - g 87 -2.6 -6.15717 | TAAAGACAAAAAAAA TATT TTC AATA AAGAAACTTTTAGAA TERM 205 274095 - 274114 + G 80 -5.8 -5.03994 | overlap 274107 ATGTGCTTTAATTTG GACTTTTG GAAT TAAAAGTC TTTTTATGTCTCCAA BRE_253 273370 - 275637 + | hypothetical protein lon-1 278150 - 275700 - | ATP-dependent protease LA TERM 206 277127 - 277109 - G 71 -7.4 -3.72073 | opp_overlap 277117, overlap 277105 ATTTATCAAAATCAA CCTTGGTA TCT TCCCAAGG AAGATTTGTAATAAG TERM 207 277117 - 277131 + g 80 -8.6 -3.99405 | opp_overlap 277109 277105 AAATCAACCTTGGTA TCTTCC CAA GGAAGA TTTGTAATAAGTTCA TERM 208 278178 - 278193 + H 90 -4.8 -5.88565 | opp_overlap 278178 AAATTTTTATGAGAA TTCATT TAAT AATGAA TTTTTTTATTATACA BRE_255 278219 - 278905 + | hypothetical protein recJ1 278886 - 281045 + | single-stranded-DNA-specific exonuclease TERM 209 281359 - 281343 - g 80 -3.8 -5.67529 | AAGGAAAAAGAAAAA TTCAAA TAGAG TTTGAA AATAAACAATACATA BRE_257 281045 - 282001 + | hypothetical protein rpsU_1 282020 - 282229 + | 30S ribosomal protein S21 TERM 210 282238 - 282258 + T 100 -9.1 -5.53288 | opp_overlap 282238 282230 TAAATAATAAAATCA GGATATTCA TGG TGAATGTCC TTTTTTTACATTGAA ftsK1 284630 - 282279 - | FtsK/SpoIIIE family protein TERM 211 282529 - 282542 + g 77 -5.3 -5.09173 | opp_overlap 282529 TCATCATCAATATAA TTTGG TGTA CCAAA TTTTTTAACCTCTTC TERM 212 284771 - 284761 - H 74 -5.4 -4.79451 | AGTCCAAATATAAAA GCAA AAA TTGC TCCCAAATTTATCTC TERM 213 288133 - 288117 - g 80 -3.8 -5.67529 | AAGGAAAAAGAAAAA TTCAAA TAGAG TTTGAA AATAAACAATACATA BRE_262 287819 - 288775 + | hypothetical protein rpsU_2 288794 - 289003 + | 30S ribosomal protein S21 TERM 214 289012 - 289032 + T 100 -9.1 -5.53288 | opp_overlap 289004 289012 TAAATAATAAAATCA GGATATTCA TGG TGAATGTCC TTTTTTTACATTGAA ftsK2 291404 - 289053 - | DNA segregation ATPase FtsK/SpoIIIE TERM 215 289303 - 289316 + g 77 -5.3 -5.09173 | opp_overlap 289303 TCATCATCAATATAA TTTGG TGTA CCAAA TTTTTTAACCTCTTC bacA 292217 - 291417 - | undecaprenyl-diphosphatase TERM 216 291545 - 291535 - G 73 -5.4 -4.79451 | AGTCCAAATATAAAA GCAA AAA TTGC TCCCAAATTTATCTC BRE_266 294381 - 292231 - | hypothetical protein TERM 217 292386 - 292399 + g 70 -8.1 -3.02233 | overlap 292384 CGATAAAAATTTCTT TGGGC AAAT GCCCA TAATCTTTTTCCCAT TERM 218 292798 - 292784 - G 70 -5 -4.70879 | opp_overlap 292784 TTTAAAGCCGAAAAA TCTTGC CTT ACAAGA TAATTAATAGCAAGT TERM 219 293175 - 293165 - G 73 -5.4 -4.73613 | CTAGCATTAAGAAAA GCAA GCC TTGC TAAAACAGCACTGTC TERM 220 293745 - 293715 - G 76 -7 -4.28432 | AAGTTGAATTTAAAA GATTATCTTTCCCT TCA AGAACAAGATAATC ATGAGCCCTTACATG TERM 221 293851 - 293837 - G 78 -7.2 -4.53036 | TCAGAAATATTAAAA TAAAGC ACT GCTTTA AATAAAAGATTTTCA BRE_267 295567 - 294362 - | hypothetical protein BRE_268 295727 - 297130 + | hypothetical protein BRE_269 298400 - 297132 - | hypothetical protein lepB-3 298470 - 298973 + | signal peptidase I dnaK-1 300514 - 299006 - | heat shock protein 70 BRE_272 301008 - 300511 - | hypothetical protein TERM 222 300865 - 300846 - G 74 -8 -3.68222 | opp_overlap 300845 300848 TTTTAATTTCAATAA TACTGATA TTTC TATCAGTA GCTTGATTAATCTCA BRE_273 301340 - 301029 - | hypothetical protein TERM 223 301222 - 301234 + g 72 -6.3 -4.26305 | opp_overlap 301222 TCTCTCTCATTTAAA CTCAA ATG TTGAG TTTCTCTTACCTTTT BRE_274 303262 - 301364 - | hypothetical protein TERM 224 302568 - 302558 - G 70 -5.4 -4.4767 | TGATTCACCATAAAA TGGA TAG TCCA CAAATTCTTTTATTT BRE_275 303753 - 303265 - | hypothetical protein TERM 225 303477 - 303464 - G 70 -5.3 -4.62069 | opp_overlap 303449 TTCTTACTTGAAAAA TCCTT TATC AAGGA AGAATCTATATCATT ylxH-1 304650 - 303760 - | ATP-binding protein flhF 305841 - 304660 - | flagellar-associated GTP-binding protein TERM 226 305030 - 305020 - G 70 -6.8 -3.89881 | opp_overlap 305020 AGCAAGTTTCATAAA GTCC TTA GGAC TCTTACCAATTGTAT TERM 227 305579 - 305589 + g 80 -5.4 -5.243 | opp_overlap 305567 305579, overlap 305565 ACATCTTCAATTGAA GAAG TCT CTTC TTTTTTAATACTTTG flhA 307918 - 305831 - | flagellar biosynthesis protein flhB 309052 - 307931 - | flagellar biosynthesis protein fliR 309837 - 309049 - | flagellar biosynthesis protein TERM 228 309252 - 309231 - G 80 -8.9 -3.54129 | GAGATGTTTTGGAAA TTATACCTA AAAT TAGGTATAA AAGTAAAAGAACTCC fliQ 310117 - 309854 - | flagellar biosynthesis protein fliP 310890 - 310126 - | flagellar biosynthesis protein fliZ 311532 - 310900 - | flagellar biosynthesis protein fliN 311869 - 311525 - | flagellar motor switch protein fliM 312974 - 311916 - | flagellar motor switch protein TERM 229 312563 - 312580 + g 73 -8.5 -3.07994 | opp_overlap 312554 312563 312578 CAAAAAGCCTATCAA CTATTGC AAAT GCAATAG TTGGATCAACTTCAA TERM 230 312580 - 312563 - G 74 -8.5 -3.23009 | opp_overlap 312563, overlap 312554 312578 CAAAAAGCCTATCAA CTATTGC AAAT GCAATAG TTGGATCAACTTCAA TERM 231 312848 - 312866 + g 71 -8.8 -2.9155 | overlap 312843 CTTTAACTTTCTGTT TCTTGCCC ATA GGGCTAGA TATAATATTAGAAAG fliL 313530 - 312994 - | flagellar protein motB 314362 - 313574 - | flagellar motor rotation protein B TERM 232 313987 - 313968 - G 74 -2.2 -5.63103 | gap 1 GCTGAATCAAAAAAA GCATCTGCT AAA AG-AGATAC AACAACACCTCGCTC motA 315147 - 314362 - | flagellar motor rotation protein A TERM 233 315080 - 315063 - G 80 -5.6 -5.12707 | TTAAATCCCAAAAAA CTCCTA ATCCTG TAGGAG TAAATGCCATAGATA flbD 315365 - 315144 - | flagellar protein flgE 316707 - 315382 - | flagellar hook protein TERM 234 316642 - 316614 - G 71 -8.3 -3.27525 | opp_overlap 316623 316632, overlap 316609 316632 CTTTCTTAAAGCCAA CGGTATTAACATT TGA AATGTTATTACCA ACAACATCCATTCTT flgD 317152 - 316712 - | flagellar hook assembly protein flbC 318334 - 317165 - | flagellar protein flbB 318952 - 318338 - | flagellar protein flbA 319376 - 318945 - | flagellar protein TERM 235 319337 - 319347 + g 87 -2.6 -6.23545 | opp_overlap 319337 TTCTAATGGTTAATA TTTT TTC AAAA TTTTTTTTCTTTAAA fliI 320683 - 319373 - | flagellum-specific ATP synthase fliH 321623 - 320697 - | flagellar assembly protein fliG-2 322666 - 321632 - | flagellar motor switch protein TERM 236 321717 - 321734 + g 75 -8.5 -3.44487 | AGAGAGACAATTTTT TGTTGAG CTTC CTCAACA TCTTTACGTCTAGTG fliF 324388 - 322682 - | flagellar M-ring protein TERM 237 323965 - 323947 - G 95 -11.8 -3.28637 | overlap 323958 CATCAACATCATCAA GAGCAACA ATA TGTTGCTC AACAGCTCTTGTAAT TERM 238 324312 - 324334 + g 90 -3.4 -5.9667 | opp_overlap 324305 324312 GCAATAACCCCAAAA GCCACTTT TTGAACC ATAGTGGC TTTTTTTATCTTTTT fliE 324731 - 324402 - | flagellar hook-basal body complex protein flgC 325211 - 324747 - | flagellar basal-body rod protein flgB 325641 - 325234 - | flagellar basal-body rod protein TERM 239 325460 - 325474 + g 76 -7.2 -4.41895 | opp_overlap 325460 TTACCTCTAATCAAA GACAAA TTA TTTGTC TTTTCATTCAAAATT TERM 240 325474 - 325460 - G 72 -7.2 -3.91084 | opp_overlap 325460 TTACCTCTAATCAAA GACAAA TTA TTTGTC TTTTCATTCAAAATT hslU 327029 - 325674 - | heat shock protein hslV 327568 - 327026 - | heat shock protein BRE_305 329220 - 328531 - | putative lipoprotein TERM 241 328597 - 328621 + g 95 -11.7 -3.65046 | opp_overlap 328612 TGAAGCCTTACTTTT TGCTTTATTAT AAA ATAATAAAGCA TTATTAAAATCACCA ftsZ 330417 - 329221 - | cell division protein TERM 242 330065 - 330045 - G 86 -9.7 -3.73534 | opp_overlap 330045 330045 CAACTTGAGCAATAA CAGGAGCAG CAC CTGTTCCTG TTCCTCCTCCCATTC TERM 243 330045 - 330065 + g 95 -11.9 -3.22223 | opp_overlap 330045, overlap 330045 CAACTTGAGCAATAA CAGGAGCAG CAC CTGTTCCTG TTCCTCCTCCCATTC ftsA 331679 - 330438 - | cell division protein divIB 332422 - 331679 - | cell division protein ftsW 333557 - 332454 - | cell division protein TERM 244 333212 - 333196 - G 70 -5.9 -4.26792 | AGATAAATTGTAAAA GAAACCT TAA AGATTTC TGATGGCTGAATACT TERM 245 333523 - 333509 - G 75 -5.8 -4.6313 | GTGAAAATAAAACAA GAAAAT AAC ATTTTC TAAGAGAGGTTTTCT mraY 334623 - 333568 - | phospho-N-acetylmuramoyl-pentapeptide-transferase murF 336044 - 334647 - | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase BRE_312 336341 - 336060 - | hypothetical protein BRE_313 337227 - 336334 - | S-adenosyl-methyltransferase BRE_314 338050 - 337220 - | hypothetical protein TERM 246 337659 - 337638 - G 71 -4.6 -4.92669 | opp_overlap 337638 337636 GACACAAAAAAAGAA GAAATAAT ATTTAA ATTATTTC TATTTTTTATAACAA BRE_315 339142 - 338054 - | hypothetical protein TERM 247 338419 - 338389 - G 74 -8.6 -3.25419 | opp_overlap 338380 338388, overlap 338380 338388 338390 AAAAAGGATTAAAAT CTTTTATCTTTAAA TCT TTTAAAGATAAAAC CTGATTATATCCATG TERM 248 338418 - 338390 - G 93 -12.1 -2.53625 | opp_overlap 338380 338388, overlap 338380 338389 338388 AAAAGGATTAAAATC TTTTATCTTTAAA TCT TTTAAAGATAAAA CCTGATTATATCCAT BRE_316 339911 - 339153 - | hypothetical protein recN 341529 - 339943 - | ATPase involved in DNA repair BRE_318 342455 - 341556 - | probable inorganic polyphosphate/ATP-NAD kinase TERM 249 342244 - 342269 + gr 72 -6.3 -4.34737 | opp_overlap 342236 342242 342244, overlap 342236 GCAAAAATCAAATTA TCTTTATTTGA TATA TCACATAAAGA TTTATTCATTCCTGC cheW-1 342915 - 342388 - | purine-binding chemotaxis protein ftsJ 343537 - 342956 - | ribosomal RNA methyltransferase TERM 250 344481 - 344464 - g 78 -2.8 -5.85244 | AAGTAAAAGAAAAAA TATTAC AATTCA GTAATA TGATCAACTCATCAA ispB 343590 - 344636 + | octaprenyl-diphosphate synthase BRE_322 344633 - 345301 + | hypothetical protein BRE_323 346104 - 345298 - | hypothetical protein BRE_324 347037 - 346105 - | hypothetical protein mglA-1 348491 - 347034 - | methylgalactoside ABC transporter, ATP-binding protein tpn38b 349568 - 348495 - | exported protein TERM 251 349766 - 349750 - R 73 -2.3 -5.7506 | TAAAAAAAAACAAAA TCTTAAA TAA TTAAAGA GAAATTCAATTTTAT TERM 252 349906 - 349895 - R 78 -3 -5.72053 | opp_overlap 349895 CAATCAAATAAAAAA CTAT ATTT ATAG TTTCTAAATTATAAC TERM 253 349982 - 350008 + r 70 -8.2 -3.20723 | opp_overlap 349976 349974 350002 ATCAAAATTCTCTAG GTGTTAATAAAT AAA ATTCATTAACAC TTAAATTACTAGGAA BRE_327 351059 - 349968 - | hypothetical protein TERM 254 350236 - 350224 - G 74 -4.9 -5.18866 | GCTAAATAAACAAAA TTCTT AAA AAGAA TACCTACTCTTCCTC TERM 255 350532 - 350521 - G 70 -3 -5.36441 | GTTTTATATAAAAAA GAAT TATT ATTC CAAAGTAAAATACTA TERM 256 351913 - 351903 - g 87 -2.6 -6.17033 | AAAAAAAAGAAAAAA TAAA TTA TTTA AAAGAAAATATTGAA BRE_328 351560 - 352681 + | putative lipoprotein TERM 257 352726 - 352684 - f 93 -8.9 -4.86731 | gap 1, opp_overlap 352690 352720, overlap 352668 352690 TCCTTCTAAATAAAA TATAAA-GAAGAAAACAAAC ATAA ACTTGTTTTCTTCTTTTATA TCTAATAAAATTAAA TERM 258 352690 - 352719 + F 86 -8.1 -4.62984 | opp_overlap 352668 352684 352690 TAAATAAAATATAAA GAAGAAAACAA ACATAAAC TTGTTTTCTTC TTTTATATCTAATAA TERM 259 352719 - 352690 - f 95 -9.5 -4.59774 | opp_overlap 352690, overlap 352668 352684 TAAATAAAATATAAA GAAGAAAACAAAC ATAA ACTTGTTTTCTTC TTTTATATCTAATAA TERM 260 353099 - 353086 - g 71 -8.1 -3.24735 | opp_overlap 353086 CATTGAAACACCTAA GTGGG TTAT CCCAC TATCTCAAAAAATAT BRE_329 352775 - 353137 + | putative lipoprotein BRE_330 354286 - 353171 - | hypothetical protein TERM 261 354175 - 354163 - G 71 -4.1 -5.06414 | TTTTTCTAATAAAAA GATGA AAT CCATC ATCATGAGCTTCAAC BRE_331 357205 - 354350 - | hypothetical protein BRE_332 358113 - 357220 - | glycerol-3-phosphate O-acyltransferase TERM 262 357320 - 357330 + g 73 -5.4 -4.68528 | AAAATTTCTTTTGTT GGTT CTA AACC TTCTTTTTTCAATTT TERM 263 359961 - 359987 + H 78 -3.1 -5.77853 | TATTCAAATACAAGC CACTTTTATAA ATGAG TTATATGAGTG TTTTTTTTAAAACTT oppA-2 360242 - 361915 + | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein TERM 264 361922 - 361957 + F 70 -8.6 -2.59883 | gap 1, opp_overlap 361922, overlap 361919 361926 ATAAAATAGAAAAAA CAGACATCTAAATGAAA CAT TTTTGTT-AGATGTCTG TAAATTAATAATTTT TERM 265 361957 - 361922 - f 86 -4.8 -5.65678 | opp_overlap 361922 361919 361926 ATAAAATAGAAAAAA CAGACATCTAAATGAA ACAT TTTTGTTAGATGTCTG TAAATTAATAATTTT TERM 266 362448 - 362436 - g 70 -4.9 -4.788 | AAACTAATGCAAAAA TATCA CCT TGATA AGCCTTTTTATATGC TERM 267 362566 - 362553 - g 73 -5.3 -4.70453 | AATCAATATATAAAA TTAGG GTTT CCTAA GTCATTTACAATTGG oppB-1 362280 - 363200 + | oligopeptide ABC transporter, permease protein TERM 268 363193 - 363183 - f 85 -5.4 -5.43414 | ATTATATACAAAAAA CTTG ATC CAAG AATATAGGAGAACAA oppC-1 363184 - 364269 + | oligopeptide transport system permease protein oppD 364280 - 365152 + | oligopeptide transport system ATP-binding protein TERM 269 365561 - 365547 - g 72 -3.6 -5.19998 | ACAATGAAAACAAAA TTATTC CAC GAACAA AACAAGAAATAGAAC oppF 365153 - 366136 + | oligopeptide transport system ATP-binding protein BRE_339 367068 - 366262 - | P26 TERM 270 366403 - 366390 - G 73 -5.3 -4.66418 | opp_overlap 366392, overlap 366392 CAAAATAATAATAAA TCCTA CCCT TAGGA AGATCTTTAAGCTTA TERM 271 368239 - 368226 - g 76 -3.8 -5.49809 | GAAATGGCAAAAAAA GCAG GCTATA CTGC AATAGTATCACATAG eno 367146 - 368444 + | enolase TERM 272 368457 - 368479 + T 74 -4.8 -4.96848 | opp_overlap 368460, overlap 368460 368477 TAAGAATAAATAATT AAAGCCCTCT TTC AAAGGGCTTA TTTTTATATAAACAA TERM 273 368476 - 368460 - T 85 -8.7 -4.20454 | opp_overlap 368460 368457 GAATAAATAATTAAA GCCCTCT TTC AAAGGGC TTATTTTTATATAAA TERM 274 368460 - 368476 + T 76 -6.5 -4.58943 | opp_overlap 368460, overlap 368457 GAATAAATAATTAAA GCCCTCT TTC AAAGGGC TTATTTTTATATAAA rpsI 368925 - 368515 - | 30S ribosomal protein S9 rplM 369385 - 368936 - | 50S ribosomal protein L13 BRE_343 370250 - 369465 - | hypothetical protein gatB 371700 - 370243 - | Glu-tRNA(Gln) amidotransferase, subunit B gatA 373135 - 371690 - | glu-tRNA amidotransferase, subunit A TERM 275 371847 - 371835 - G 72 -6.3 -4.29432 | overlap 371842 GAAAGTGCAGGAAAA CCAAT AAG ATTGG CAATCACAGTACATA TERM 276 372369 - 372379 + g 70 -5.4 -4.51743 | ACAGCCAATTTAGTA CCTT TTA AAGG TTTATTTAATAATGG gatC 373422 - 373147 - | Glu-tRNA(Gln) amidotransferase, subunit C uvrD 375528 - 373432 - | DNA helicase TERM 277 374201 - 374187 - G 70 -8.6 -2.73505 | opp_overlap 374186 374187, overlap 374186 374174 AACTTAAAAATATAT CAAGAG AAT CTCTTG CTTTTCCTTTAAGAT TERM 278 374187 - 374201 + g 74 -8.6 -3.32756 | opp_overlap 374187 374186 374174, overlap 374186 AACTTAAAAATATAT CAAGAG AAT CTCTTG CTTTTCCTTTAAGAT TERM 279 374345 - 374355 + g 80 -4 -5.63517 | opp_overlap 374345, overlap 374338 ATTATTCTCAAAAAA GATA CTT TATC TTTTTTATTTACAAA TERM 280 374355 - 374345 - G 71 -4 -5.03715 | opp_overlap 374345 374338 ATTATTCTCAAAAAA GATA CTT TATC TTTTTTATTTACAAA BRE_348 376727 - 375525 - | hypothetical protein BRE_349 377416 - 376739 - | hypothetical protein TERM 281 377768 - 377754 - g 81 -2.9 -5.88476 | overlap 377743 AAAACAAATAAAAAA TTTGA AAATA TCAAA CCTCCTCTAAGATTT TERM 282 378040 - 378028 - g 79 -3.5 -5.61824 | CAAAAGCCAAAAAAA TTATT GAA AATAA CGATATGACTGAGAA TERM 283 378104 - 378077 - g 72 -5 -4.81851 | overlap 378063 AGTCAAACTCAAAAA TGAATATGACAA CAAA TTACCATACTCA ACATTCATTGAAAAT TERM 284 378397 - 378381 - g 81 -2.3 -6.00086 | ACATTAGAAAAAAAA TTATCTC CTC AAGACAA TGCTTTAAAATATTT TERM 285 378923 - 378911 - g 84 -3.5 -5.76633 | opp_overlap 378911 TCACAGAGAAAAAAA TTTAA ACA TTAAA TTAGATCTCAAAATA BRE_350 377556 - 378965 + | fibronectin/fibrinogen-binding protein, putative pyk 379079 - 380512 + | pyruvate kinase TERM 286 380833 - 380811 - T 71 -2.9 -5.52096 | gap 1 AAATTTAATAAAAAA CTT-TACATT TACA AATGTAGAAG ACAAAATAATAGAAA rpmB 381564 - 381286 - | 50S ribosomal protein L28 BRE_353 383172 - 381574 - | hypothetical protein TERM 287 382586 - 382562 - G 84 -9.5 -3.67954 | opp_overlap 382565, overlap 382565 TAAATACATTCCAAA TAATCCTTAAT ATC ATCAAGGATTA CTCCACAACTGACAG TERM 288 382583 - 382565 - G 70 -6.8 -3.9578 | opp_overlap 382565, overlap 382562 ATACATTCCAAATAA TCCTTAAT ATC ATCAAGGA TTACTCCACAACTGA TERM 289 383576 - 383565 - g 77 -3 -5.62219 | opp_overlap 383565, overlap 383557 AACATATCAAAAAAA TTTG CATA CAAA ATTGTACCATTAAGT TERM 290 384264 - 384285 + G 73 -7.5 -3.71848 | opp_overlap 384263 384264 ATTATAAATGAAAAT TATATGAAT AAAG ATTCATATA TTCTTAATAAAGAAC TERM 291 384285 - 384264 - g 70 -7.5 -3.37003 | opp_overlap 384264, overlap 384263 ATTATAAATGAAAAT TATATGAAT AAAG ATTCATATA TTCTTAATAAAGAAC BRE_354 383256 - 384371 + | putative lipoprotein BRE_355 386180 - 384366 - | hypothetical protein BRE_356 387130 - 386186 - | hypothetical protein BRE_357 387651 - 387157 - | transcription factor, putative TERM 292 387579 - 387589 + g 78 -2.6 -5.80951 | CACCATTAAATTCCT TATT CTG AATA TTTTTTATTTTGCCT BRE_358 388289 - 387696 - | hypothetical protein BRE_359 389010 - 388282 - | uncharacterized protein conserved ctp 390498 - 389014 - | carboxyl-terminal protease BRE_361 390541 - 390972 + | hypothetical protein ylxH-2 390976 - 392109 + | ATP-binding protein TERM 293 392539 - 392525 - g 78 -4.4 -5.54192 | ACGAATGTAAAAAAA TATTTT AAA AAAATA ACAGATTATGGTGCA lgt 392120 - 393073 + | prolipoprotein diacylglyceryl transferase TERM 294 393503 - 393485 - g 89 -6.2 -5.53436 | ATACAACAGAAAAAA TTTTATTA TGA TAATAAAA ATGCCAATCTTGATT BRE_364 393131 - 395128 + | periplasmic protein yscI 395261 - 396634 + | aminopeptidase I BRE_366 396585 - 396902 + | hypothetical protein TERM 295 396925 - 396903 - T 84 -5.7 -5.18158 | gap 1, opp_overlap 396915, overlap 396905 AATAAAAAAAAATAA TA-GACCCAA CTAT TTGGGTCCTA AAATTTAAAATTTTT TERM 296 396922 - 396905 - T 90 -9.9 -4.13373 | opp_overlap 396915, overlap 396903 TAAAAAAAAATAATA GACCCAA CTAT TTGGGTC CTAAAATTTAAAATT gpsA 397975 - 396923 - | glycerol-3-phosphate dehydrogenase, NAD(P) TERM 297 398352 - 398310 - R 100 -14.7 -2.51642 | gap 1, opp_overlap 398314 398317, overlap 398317 ACATGATCTACTAAG TCTAGAAGTTTATTAGAAAA ACGT TTTTCTAATAAACTTCT-GA TATCAACAGTTTCAT TERM 298 398314 - 398349 + r 100 -16.6 -2.63112 | opp_overlap 398310 398317, overlap 398317 GATCTACTAAGTCTA GAAGTTTATTAGAAAA ACGT TTTTCTAATAAACTTC TGATATCAACAGTTT TERM 299 398346 - 398317 - R 100 -12.5 -3.37464 | opp_overlap 398317 398314, overlap 398310 CTACTAAGTCTAGAA GTTTATTAGAAAA ACGT TTTTCTAATAAAC TTCTGATATCAACAG TERM 300 398317 - 398346 + r 100 -12.5 -3.46602 | opp_overlap 398310 398317, overlap 398314 CTACTAAGTCTAGAA GTTTATTAGAAAA ACGT TTTTCTAATAAAC TTCTGATATCAACAG TERM 301 398797 - 398785 - R 73 -3.5 -5.27938 | ATTTTTAAAGAAAAA TTTAA TTC TTAAA AGCTTAATATGCAAA tyrS 401521 - 400301 - | tyrosyl-tRNA synthetase glyS 402863 - 401526 - | glycyl-tRNA synthetase gltX 404398 - 402878 - | glutamyl-tRNA synthetase BRE_372 405149 - 404367 - | hypothetical protein TERM 302 404580 - 404594 + gH 95 -7.2 -5.41746 | opp_overlap 404579 TGTAAAAATAAGATC TCCTTT TAA AAAGGA TTTTTTTAAAAAATT TERM 303 405126 - 405116 - GH 74 -2.6 -5.64328 | AACAAAAAAACAAAA TATT AAA AATA AAAAGTATTCTGTCA TERM 304 405788 - 405768 - g 77 -6.1 -4.64157 | opp_overlap 405768 TAAATAATCATAAAA CTGTTGAAC TTT GCACAACAG CTCTTCTTCATAAAA BRE_373 405281 - 406426 + | hypothetical protein pfs-1 406440 - 407153 + | 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine TERM 305 407376 - 407365 - gf 78 -3 -5.73563 | AGTAAAGCAAAAAAA GATA TAGA TATC AAAGAAACCGCAAAA metK 407170 - 408339 + | S-adenosylmethionine synthetase BRE_376 408252 - 408809 + | autoinducer-2 production protein pkcI 409369 - 408938 - | protein kinase C1 inhibitor mgtE 410766 - 409405 - | Mg2 transport protein BRE_379 412245 - 410821 - | hypothetical protein TERM 306 411911 - 411900 - G 71 -4.4 -4.90013 | overlap 411901 CAACCCAAGCAAAAA TTGG TAAT CCAA TACCATCATCATTTC TERM 307 412071 - 412057 - G 90 -5.7 -5.72254 | GTAAACAAGAAAAAA GCTTG AAAGA CAAGC TTGCAATTGATCTAT TERM 308 412337 - 412325 - R 72 -6.3 -4.26622 | opp_overlap 412324 AAATGAGATTTAAAA CCAAA AAT TTTGG ATATTAAACATAAAT TERM 309 412450 - 412440 - R 74 -2.6 -5.80817 | CCTAAGATAAAAAAA TTAA TCA TTAA AATACGTATCAAAAT bmpA-1 413538 - 412519 - | basic membrane protein A bmpC 414664 - 413594 - | basic membrane protein C; lipoprotein bmpA-2 415851 - 414823 - | basic membrane protein A; lipoprotein TERM 310 415444 - 415432 - G 77 -6.3 -4.67755 | opp_overlap 415431 ATACCCAGCTAAAAA TGAAG CCT CTTCA ACTTTAAAGGAAAGA bmpD 416921 - 415875 - | basic membrane protein D rpsG 417458 - 416985 - | 30S ribosomal protein S7 rpsL 417847 - 417473 - | 30S ribosomal protein S12 rpoC 422043 - 417910 - | DNA-directed RNA polymerase beta' chain TERM 311 419162 - 419174 + g 83 -4.9 -5.56568 | overlap 419156 TGAGAATCTGAAACC TTAAG TTT CTTAA TTTTTTTAATACTCT rpoB 425525 - 422058 - | DNA-directed RNA polymerase beta chain TERM 312 425581 - 425556 - R 85 -8.3 -4.46254 | TTAAGACACAATAAA CCACATGCCAC TTAA ACGACATGTGG AATAAAAAATTTGGC rplL 425982 - 425611 - | 50S ribosomal protein L7/L12 rplJ 426544 - 426056 - | 50S ribosomal protein L10 rplA 427229 - 426555 - | 50S ribosomal protein L1 rplK 427663 - 427229 - | 50S ribosomal protein L11 nusG 428273 - 427719 - | transcription antitermination factor TERM 313 428223 - 428245 + g 78 -8.6 -3.86897 | overlap 428224 TATTTCCTGTTCTAT TTTTTTCTCA TAC TGAGAAAAAG TTTGTAGCACATACC TERM 314 428224 - 428244 + g 80 -9.9 -2.91924 | overlap 428223 ATTTCCTGTTCTATT TTTTTCTCA TAC TGAGAAAAA GTTTGTAGCACATAC secE 428454 - 428284 - | preprotein translocase SecE subunit rpmG 428746 - 428567 - | 50S ribosomal protein L33 BRE_397 429795 - 428944 - | hypothetical protein TERM 315 429317 - 429307 - G 70 -5.4 -4.55295 | opp_overlap 429307 TCCGGTATAAACAAA CTGT TCA ACAG TTGTATTCATTAATG BRE_398 430870 - 429806 - | hypothetical protein TERM 316 431351 - 431363 + GH 70 -4.9 -4.70659 | TTAACAAAAGATGGT CATAA GGG TTATG TTTTTGACTATGCAC BRE_399 430853 - 432208 + | putative lipoprotein TERM 317 432439 - 432423 - g 71 -2.4 -5.4111 | AAGAATTACAAAAAA TAAAAA ATGAA TTTTTA ATTACATCTATATAT TERM 318 432809 - 432787 - g 84 -3.4 -5.75945 | ATTGCTTAAAAAAAA TGTCTACATC AGC GATGAATACA AAAAAGAAATTAAAA BRE_400 432221 - 432877 + | hypothetical protein TERM 319 433393 - 433364 - g 80 -3.8 -5.626 | opp_overlap 433345, overlap 433345 TATTTGATAAAAAAA TATTTCTTGAAA CATTCT TTCCAAAAAATA TTTTTACTATATTTA BRE_401 433027 - 434217 + | glutamate transporter, putative proS 435719 - 434244 - | prolyl-tRNA synthetase TERM 320 435040 - 435050 + g 82 -5.4 -5.48063 | TAATGTGATGTTCCT GCTT GCA AAGC TTTTTTATCTTGCAT TERM 321 435983 - 436025 + H 100 -14 -3.89334 | opp_overlap 435980 435983 435998 436007, overlap 435975 435985 435998 TTATACTTAAATTTA TATTTATATTAAAAATATGT CAA ACATATTTTTAATATAAATC TTTGCTGTAATATTT TERM 322 436025 - 435983 - H 100 -14 -2.67244 | opp_overlap 435975 435983 435985 435998, overlap 435980 435998 436007 TTATACTTAAATTTA TATTTATATTAAAAATATGT CAA ACATATTTTTAATATAAATC TTTGCTGTAATATTT TERM 323 435985 - 436023 + H 100 -16.6 -3.5218 | opp_overlap 435983 435980 435998 436007, overlap 435975 435983 435998 ATACTTAAATTTATA TTTATATTAAAAATATGT CAA ACATATTTTTAATATAAA TCTTTGCTGTAATAT TERM 324 436010 - 435998 - H 71 -4.9 -4.81551 | opp_overlap 435998 435985 435983, overlap 435983 435980 436007 TATTTATATTAAAAA TATGT CAA ACATA TTTTTAATATAAATC TERM 325 435998 - 436010 + H 71 -4.9 -4.81551 | opp_overlap 435983 435980 435998 436007, overlap 435985 435983 TATTTATATTAAAAA TATGT CAA ACATA TTTTTAATATAAATC TERM 326 436040 - 436062 + H 76 -8 -3.70043 | overlap 436038 CTTTGCTGTAATATT TATTTTTATA AGC TATAAAAATA TGTTTGTATATTACA BRE_403 436493 - 437116 + | hypothetical protein BRE_404 437140 - 437964 + | hypothetical protein manA 439136 - 438015 - | mannose-6-phosphate isomerase fruA-1 441000 - 439249 - | PTS system, fructose-specific IIABC component TERM 327 441224 - 441213 - g 70 -3 -5.3689 | ATAAAGAAAATAAAA TTTC AAAT GAAA AAACACAAAAAAAAG BRE_407 441125 - 441805 + | uncharacterized conserved protein in borrelia TERM 328 441925 - 441908 - g 78 -7.1 -4.53966 | AAATAAAAGAAATAA CTTCTAA TTAT TTAGAAG AAATTAAAAATAGAT TERM 329 442579 - 442563 - g 91 -8.1 -5.14477 | opp_overlap 442562 442566 TACAGATTTAAAAAA TTACGTT GTG AACGTAA ATTCAATTGAAGAGA nucA 441802 - 442686 + | endonuclease precursor BRE_409 442683 - 443447 + | hypothetical protein BRE_410 444063 - 443467 - | hypothetical protein TERM 330 443648 - 443634 - G 77 -5 -5.3321 | AAGCAACAACAAAAA CAGAAA TAC TTCCTG CAAACGTTTTATTAT BRE_411 445082 - 444063 - | peptidyl-prolyl cis-trans isomerase cheR-2 445230 - 446093 + | chemotaxis protein methyltransferase TERM 331 446418 - 446392 - g 71 -7.4 -3.70709 | overlap 446390 ATCATCTAATAAAGA CCTTGCAATAAA TGC TCTACTACAAGG TGCTGATGATTTCAT cheB-1 446129 - 447289 + | protein-glutamate methylesterase TERM 332 447731 - 447721 - g 70 -5.4 -4.60797 | CTTGCAGACAGAAAA GTTG AGA CAAC TCTAAAGAGAGCTTG TERM 333 447744 - 447760 + G 72 -5.9 -4.56597 | AACTCTAAAGAGAGC TTGGAAT TGT GTTCCAA TTTTTGAAAAAACAA traB 447313 - 448521 + | pheromone shutdown protein TERM 334 448787 - 448775 - g 70 -4.9 -4.66537 | overlap 448781 TCGTTGAAGACAAAA TCAAT ACT ATTGA CAATAGGGATAATTT adk 448561 - 449208 + | adenylate kinase TERM 335 449744 - 449730 - g 70 -5 -4.66609 | opp_overlap 449730 TATCCCATGCAAAAA TAGGAA TTA CTCCTA TTGCATTTTTAAATA BRE_416 449303 - 450379 + | hypothetical protein rrp-1 451327 - 450395 - | response regulatory protein BRE_418 455769 - 451324 - | sensory transduction histidine kinase TERM 336 455247 - 455234 - G 74 -3.9 -5.26918 | ATATGCCATAAAAAA TACAA TGAT TTGTA ACTTCCATATATTAG TERM 337 455340 - 455322 - G 71 -2.4 -5.46698 | CTGAAAATGAAAAAA CATTATCA ATA TGACCATG CAACTTCAAAATATC TERM 338 458329 - 458340 + r 77 -7.2 -4.2354 | CAGTTCTATTTCACT CCCC TCCC GGGG TTCTTTTCACCTTTC BRE_421 459928 - 459041 - | hydrolase hpt 460014 - 460538 + | hypoxanthine phosphoribosyltransferase TERM 339 460942 - 460931 - g 91 -7.2 -5.31275 | overlap 460933 TGGCACTACAAAAAA GGGC ATTG GCCC ATGCTACGCTGACAA purA 460548 - 461831 + | adenylosuccinate synthase purB 461816 - 463210 + | adenylosuccinate lyase mag 463806 - 463216 - | 3-methyladenine DNA glycosylase TERM 340 463372 - 463356 - G 75 -3.7 -5.40072 | TCTTCCTTAAAAAAA GCTTACT ATC ATTAAGC AAATCTATTTTGTTA TERM 341 464339 - 464308 - R 89 -11.1 -3.51329 | overlap 464334 464335 TACTGCTAATTATAA CCTCCATTTATTC AGCCTA AAATAAATGGAGG TTGAGGGACTCGAAC TERM 342 464366 - 464334 - R 78 -6.9 -4.67048 | overlap 464308 464335 TCAGCCTAAAATAAA TGGAGGTTGAGGG ACTCGAA CCCTCGACCCCCG ACTTGCAAAGCCGAT TERM 343 464365 - 464335 - R 86 -10.4 -3.39506 | overlap 464308 464334 CAGCCTAAAATAAAT GGAGGTTGAGGG ACTCGAA CCCTCGACCCCC GACTTGCAAAGCCGA TERM 344 464498 - 464482 - R 78 -9.5 -3.24329 | overlap 464480 TACCTTTAAGTAATA CCTTTCT CTT AGAAAGG AGGTGATCCAGCCAC TERM 345 465407 - 465423 + r 77 -8.7 -3.63744 | opp_overlap 465404, overlap 465400 465397 465417 GTTTCTAGCATAGCT CCACAGT TGA GCTGTGG TATTTTACGCACAGA BRE_429 467200 - 466526 - | hypothetical protein BRE_430 467457 - 467774 + | hypothetical protein BRE_431 468170 - 467781 - | hypothetical protein pepQ 468284 - 468862 + | proline dipeptidase (PepQ) TERM 346 468949 - 468896 - T 84 -10.1 -3.61062 | gap 1, opp_overlap 468899 468907 468913, overlap 468909 468913 AATTTAACTATATAA CTTTATCC-CAATATAAACATTTAAT CAA ATTAAATGTTTATATTGTAGATATTG TTTAATTTACTAATT TERM 347 468899 - 468946 + T 100 -12.6 -4.17002 | gap 1, opp_overlap 468896 468909 468913, overlap 468907 468913 TTAACTATATAACTT TATC-CCAATATAAACATTTAAT CAA ATTAAATGTTTATATTGTAGATA TTGTTTAATTTACTA TERM 348 468907 - 468937 + T 100 -13 -3.45634 | opp_overlap 468896 468909 468913, overlap 468899 468913 ATAACTTTATCCCAA TATAAACATTTAAT CAA ATTAAATGTTTATA TTGTAGATATTGTTT TERM 349 468935 - 468909 - T 85 -11.2 -3.0634 | opp_overlap 468907 468899 468913, overlap 468896 468913 AACTTTATCCCAATA TAAACATTTAAT CAA ATTAAATGTTTA TATTGTAGATATTGT TERM 350 468931 - 468913 - T 77 -7.6 -4.20368 | opp_overlap 468913 468907 468899, overlap 468909 468896 TTATCCCAATATAAA CATTTAAT CAA ATTAAATG TTTATATTGTAGATA TERM 351 468913 - 468931 + T 77 -7.6 -4.28188 | opp_overlap 468909 468896 468913, overlap 468907 468899 TTATCCCAATATAAA CATTTAAT CAA ATTAAATG TTTATATTGTAGATA TERM 352 469157 - 469123 - T 87 -11.6 -2.867 | overlap 469127 ATTAATATCACGATA TGAATTGCTTGTCGAA AAT TCCGATAAGCAATCCA TAATAAAAAATTTAC TERM 353 469153 - 469127 - T 77 -8.8 -3.3071 | overlap 469123 ATATCACGATATGAA TTGCTTGTCGAA AAT TCCGATAAGCAA TCCATAATAAAAAAT spo0J 470251 - 469469 - | stage 0 sporulation protein J TERM 354 470362 - 470341 - R 100 -11.7 -6.2845 | opp_overlap 470344 AATCACAAAAAAAAA GAATGTTCC ACGT GGAACATTC TAACAATATCATTAA gyrA 472835 - 470388 - | DNA gyrase, subunit A TERM 355 471365 - 471383 + g 75 -7.4 -4.20354 | CATAAATTATTTTTG TTCGGCGA TCA TCGCCAAA TTTTAAACTTAAATT gyrB 474751 - 472832 - | DNA gyrase, subunit B TERM 356 473472 - 473484 + g 70 -6.3 -4.18367 | CCTGCAGAATCACCT TCTAC AAT GTAGA TTTCTCTCTCTGCTG TERM 357 473743 - 473755 + g 70 -7.7 -3.35327 | TTCCTTTGGTTTGAC CCTCA AAC TGAGG TTCTGGCACTTTAAT TERM 358 475482 - 475452 - g 100 -12.8 -4.30177 | opp_overlap 475458, overlap 475455 TATTATAGGAACAAA CAATAAGCTTGCAT ATA ATGCAAGCTTATCA ATCGCAAAAAACCCT TERM 359 475479 - 475455 - g 100 -14.5 -4.2602 | opp_overlap 475458, overlap 475452 TATAGGAACAAACAA TAAGCTTGCAT ATA ATGCAAGCTTA TCAATCGCAAAAAAC TERM 360 475458 - 475476 + G 95 -11.8 -3.35679 | opp_overlap 475455 475452 AGGAACAAACAATAA GCTTGCAT ATA ATGCAAGC TTATCAATCGCAAAA dnaA 474985 - 476439 + | chromosomal replication initiator protein TERM 361 476484 - 476436 - f 71 -2.8 -5.59962 | gap 1, opp_overlap 476443, overlap 476443 476455 CAAAATAAACAAAAA TTAGTAA-CATTGTTCAAAATCA AAAA TATTTTTGAACAATGTTTAACAA ATTGAACAAAAAATT TERM 362 476476 - 476443 - f 77 -9.1 -3.4409 | opp_overlap 476443, overlap 476436 476455 AACAAAAATTAGTAA CATTGTTCAAAATCA AAAA TATTTTTGAACAATG TTTAACAAATTGAAC TERM 363 476672 - 476646 - f 100 -8.2 -5.12987 | opp_overlap 476650 TCAAATAAAAAGAAA TCTTTTATCTTT ATA AAAGTTAAAAGA TAATAATATAATAAA dnaN 476703 - 477863 + | DNA polymerase III, subunit beta recF 477884 - 478951 + | DNA replication and repair protein RecF BRE_440 478932 - 479231 + | hypothetical protein rpmH 479326 - 479481 + | 50S ribosomal protein L34 rnpA 479462 - 479806 + | ribonuclease P protein component BRE_443 479803 - 481440 + | 60 kDa inner-membrane protein jag 481437 - 482159 + | spoIIIJ-associated protein TERM 364 482696 - 482676 - g 72 -3.3 -5.26875 | GCTTGAATGAAAAAA TGCCATC AAGTGAA GATAGCA TTACAGATCATCCTT BRE_445 482216 - 483274 + | nucleotide sugar epimerase fba 483413 - 484492 + | fructose-bisphosphate aldolase TERM 365 484536 - 484553 + F 100 -11.3 -5.71295 | AAAAATTTAAGTTTT GTCGCCT TTGT AGGCGAC TTTTTATTTTTGTGT TERM 366 484940 - 484924 - g 71 -4.5 -4.87893 | opp_overlap 484924 AATTTCAATTAAAAA TGATTAT TTG ACAATCA GTTATGAAAATAAAG BRE_447 484724 - 485155 + | heat shock protein, HSP20 family TERM 367 485173 - 485196 + T 100 -12.6 -5.59962 | opp_overlap 485177 TTTCTGCTCCCTTAA TTAAGGATGC TTTT GCATCCTTAA TTTTTATTTATTTTC TERM 368 485192 - 485177 - T 77 -9 -3.33696 | opp_overlap 485173 TGCTCCCTTAATTAA GGATGC TTTT GCATCC TTAATTTTTATTTAT aspS 486951 - 485200 - | aspartyl-tRNA synthetase napA_1 489075 - 486955 - | Na+ /H+ antiporter TERM 369 487159 - 487169 + g 85 -3.2 -6.11243 | GTGGCTGATTCCGAT TGCG ATG TGCA TTTTTTTTATTAAAT ptsH-1 489350 - 489072 - | phosphocarrier protein HPr BRE_451 489676 - 489365 - | hypothetical protein ntrA 490907 - 489651 - | RNA polymerase sigma-54 factor TERM 370 490456 - 490483 + gr 70 -5.7 -4.27617 | overlap 490454 490457 ACGCAAATTCCTATT GGATCAAATTG TTGAAT CAATTTGATCA TTTTAGTGACCTGTG TERM 371 490457 - 490482 + gr 78 -9.2 -3.16088 | overlap 490454 490456 CGCAAATTCCTATTG GATCAAATTG TTGAAT CAATTTGATC ATTTTAGTGACCTGT BRE_453 491443 - 490910 - | chromate transport protein, putative TERM 372 491031 - 491079 + gr 79 -8.6 -3.82824 | opp_overlap 491034 491040 491069, overlap 491032 TTTGAAAGTTTGATA TTATTATAATCTATTTTGAAAA ATATG TTTTCAAATAAGATTATAATAG TTATTATCCATAGTG TERM 373 491032 - 491078 + gr 80 -9.9 -2.89212 | opp_overlap 491034 491040 491069, overlap 491031 TTGAAAGTTTGATAT TATTATAATCTATTTTGAAAA ATATG TTTTCAAATAAGATTATAATA GTTATTATCCATAGT BRE_454 492023 - 491409 - | Chromate transport protein, putative TERM 374 491779 - 491791 + gH 75 -3.5 -5.43866 | AATACAAATGCACCT TTAAA CCC TTTAA TTTTTTTCCCAATTA TERM 375 492123 - 492140 + H 90 -7.1 -5.13527 | opp_overlap 492125 ATGATGATTGTATGA TACCTAT TGGT ATAGGTA TTTTGTTTGTTAATT TERM 376 492175 - 492185 + G 91 -4 -6.04419 | ATTTTTTGATTGTAA TAAG GGT CTTA TTTTTTTGTTATTTT BRE_455 492147 - 493088 + | hypothetical protein TERM 377 493070 - 493090 + T 90 -7.7 -5.09245 | CATTCATGTTGTGAA TCTTAGTAA ACT TTGCTAAGA TTTTTGTGATTTTGA BRE_456 494238 - 493072 - | lipopolysaccharide biosynthesis-related protein TERM 378 493623 - 493633 + g 95 -4 -6.30182 | opp_overlap 493623 TTCCAACGAAGATTA TGAT TTT ATCA TTTTTTTTTATGTCA BRE_457 494306 - 495289 + | DNA polymerase III delta subunit uvrC 497101 - 495293 - | excinuclease ABC, subunit C TERM 379 496147 - 496158 + g 73 -3 -5.42862 | overlap 496156 TTAATTTTGTAATGT TTGA AGTG TCAA TTTTTTTAAAAATGT BRE_459 497212 - 498729 + | hypothetical protein BRE_460 498665 - 500029 + | hypothetical protein TERM 380 500181 - 500194 + T 77 -5.3 -5.08088 | opp_overlap 500157 GGGTTCGAATCCCAT TCTCT CCGT AGAGA TTTTTATTAAAGCTT BRE_463 501083 - 500352 - | putative lipoprotein TERM 381 501110 - 501130 + H 72 -4.1 -5.05712 | opp_overlap 501110 501112 TTCTTATAAATGAAT TACTATTAA CTT TTAAGAGTA TTTTTGATTATTTGT TERM 382 503032 - 503048 + G 70 -8.1 -3.08327 | overlap 503034 AAAGAAACTTTTATT TACTTAG TGT CTAAGTA TGTTCAAACTTTAGT dnaX 501628 - 503295 + | DNA polymerase III, gamma and tau subunits BRE_467 503298 - 503597 + | hypothetical protein recR 503601 - 504185 + | recombination protein RecR ndk 504437 - 505018 + | nucleoside-diphosphate kinase BRE_470 505022 - 505846 + | putative adenine-specific DNA methyltransferase BRE_471 506060 - 506596 + | hypothetical protein BRE_472 506593 - 507288 + | hypothetical protein BRE_473 507224 - 508057 + | ABC transporter, ATP-binding protein TERM 383 508329 - 508368 + G 75 -9.6 -2.53715 | opp_overlap 508342, overlap 508328 TTATGCAGATTGTCT TCCTATATATATATTTGA CAAA TCAAAAAAATATATAGGA CTTGCTCATAGTGGG BRE_474 508054 - 508743 + | hypothetical protein BRE_475 508745 - 509491 + | hypothetical protein lsp 509501 - 510013 + | signal peptidase II TERM 384 510196 - 510216 + G 74 -4.1 -5.22312 | overlap 510197 TTGTCAAGTGTTATT TTTAGGAAT ATT ATTTCTAAG TTTTTTGATCTGGAT BRE_477 510010 - 510234 + | hypothetical protein BRE_478 510249 - 511067 + | hypothetical protein TERM 385 512029 - 512045 + G 81 -8.7 -4.08394 | opp_overlap 512028 ATTCCTAAAATTGAT GATGGTC CTT GGCCATC TTTTCCAACAGATCT murA 511126 - 512406 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 386 512558 - 512609 + F 74 -7.8 -3.59738 | GTTGTATAATTTATT TTATTAATTTTATAAGGTAAGATA TAGA TATTTAACTTCATAAAATTAATAA TTTGCCAGTATAATA BRE_480 512643 - 514001 + | hypothetical protein TERM 387 514140 - 514154 + T 73 -2.2 -5.67967 | overlap 514142 GCTTATTGACATTGA TATTTA AGT TAAATG TTTTTTTCTCCTGCT BRE_481 514471 - 514148 - | hypothetical protein TERM 388 514540 - 514557 + H 71 -2.7 -5.4833 | opp_overlap 514543, overlap 514543 AATAATTTAGTTATA GCATTGA TTGC TCAATTC TTTTTTATTGACTAA TERM 389 515184 - 515173 - g 78 -5.8 -4.90525 | GAACCTCAAACAAAA GAGC ATTT GCTC CTTGCACAAAGAATG tuf 514819 - 516003 + | translation elongation factor TU rpsJ 516049 - 516360 + | 30S ribosomal protein S10 rplC 516394 - 517023 + | 50S ribosomal protein L3 rplD 517025 - 517654 + | 50S ribosomal protein L4 rplW 517676 - 517972 + | 50S ribosomal protein L23 rplB 517991 - 518824 + | 50S ribosomal protein L2 rpsS 518834 - 519112 + | 30S ribosomal protein S19 rplV 519119 - 519481 + | 50S ribosomal protein L22 rpsC 519485 - 520315 + | 30S ribosomal protein S3 rplP 520334 - 520750 + | 50S ribosomal protein L16 rpmC 520754 - 520954 + | 50S ribosomal protein L29 rpsQ 520960 - 521214 + | 30S ribosomal protein S17 rplN 521262 - 521630 + | 50S ribosomal protein L14 rplX 521641 - 521946 + | 50S ribosomal protein L24 rplE 521950 - 522498 + | 50S ribosomal protein L5 rpsN 522513 - 522698 + | 30S ribosomal protein S14 rpsH 522708 - 523106 + | 30S ribosomal protein S8 TERM 390 523282 - 523266 - g 71 -8.1 -3.25113 | overlap 523269 GGTTAAAATTGAAGA CAACAAT ATT ATTGTTG AGAGAGCTTTTAATA rplF 523126 - 523668 + | 50S ribosomal protein L6 rplR 523686 - 524045 + | 50S ribosomal protein L18 rpsE 524057 - 524551 + | 30S ribosomal protein S5 rpmD 524555 - 524866 + | 50S ribosomal protein L30 rplO 524859 - 525296 + | 50S ribosomal protein L15 secY 525309 - 526613 + | preprotein translocase SecY subunit rpmJ 526623 - 526736 + | 50S ribosomal protein L36 rpsM 526746 - 527123 + | 30S ribosomal protein S13 rpsK 527154 - 527543 + | 30S ribosomal protein S11 TERM 391 527658 - 527671 + G 70 -5.3 -4.45399 | AAATTTGTAATATAT CCTTT TGAG AAAGG TTTTGGTGTTACTAT rpoA 527559 - 528590 + | DNA-directed RNA polymerase rplQ 528609 - 528980 + | 50S ribosomal protein L17 BRE_510 529055 - 530596 + | hypothetical protein TERM 392 530786 - 530808 + GF 91 -10 -3.99324 | opp_overlap 530779 TAAAACAGGTGTGAA TGTGATTACT ACG GGTAATCACA TTTATGCTGATCCGA BRE_511 530565 - 531377 + | hypothetical protein tlyA 531358 - 532149 + | hemolysin BRE_513 532925 - 532146 - | hypothetical protein TERM 393 532401 - 532360 - G 95 -12 -3.20307 | gap 1, opp_overlap 532370, overlap 532358 532361 TTAATATGAGCAATA CCCTCATTAACACTCAAAT TTAAT ATTTGAGTGTTAAT-AGGA ATTAGGCTTAGAAAA TERM 394 532400 - 532361 - G 100 -13.3 -2.51702 | gap 1, opp_overlap 532370, overlap 532360 532358 TAATATGAGCAATAC CCTCATTAACACTCAAAT TTAAT ATTTGAGTGTTAAT-AGG AATTAGGCTTAGAAA TERM 395 532370 - 532392 + g 79 -9.3 -3.16742 | opp_overlap 532361 532360 532358 CAATACCCTCATTAA CACTCAAAT TTAAT ATTTGAGTG TTAATAGGAATTAGG BRE_514 532981 - 534303 + | GTP-binding protein BRE_515 534300 - 535553 + | hypothetical protein BRE_516 535559 - 536245 + | putative hydrolase TERM 396 536443 - 536466 + G 79 -9 -3.4678 | overlap 536444 GATCAATAATCTTGC TGTTGATATG GAAG CATATCAACG TTCTAGTATAGAAAT TERM 397 536444 - 536465 + G 81 -10.3 -2.67747 | overlap 536443 ATCAATAATCTTGCT GTTGATATG GAAG CATATCAAC GTTCTAGTATAGAAA TERM 398 536771 - 536755 - g 73 -5.2 -4.65969 | AACAAATAAGGAAAA TCTTGA ATCTA TCAAGA TTGAGAGTTGGGAAA TERM 399 537215 - 537249 + G 71 -7.4 -3.84808 | overlap 537206 TTAGTAGACAATGAG GTATTGTCTTTAAG TTCTGTT TTTAAGGACAATAC TTATTCTAGATTGAA TERM 400 542874 - 542864 - g 70 -5.4 -4.49389 | ATTGGAGAATTAAAA GACA TTG TGTC AGAATTATTAGCCAA BRE_517 536264 - 543250 + | p-512 protein pheS 543261 - 544808 + | phenylalanyl-tRNA synthetase alpha chain pheT 544801 - 546495 + | phenylalanyl-tRNA synthetase beta chain TERM 401 547523 - 547548 + G 71 -4.1 -5.05782 | GCTGCTGCTGAAGGG TTTTTGGCTTC TGTG GAAGTTAGAAA TTTTTTGGGATAAGT trxB 546584 - 547561 + | thioredoxin reductase yacO 548324 - 547590 - | rRNA methylase dnaJ-1 549426 - 548326 - | heat shock protein TERM 402 548517 - 548528 + g 73 -4.4 -5.11112 | GTTCATCATTTTCTG TTCC TTTT GGAA TTTTTATTGAAATTT TERM 403 549376 - 549404 + g 73 -7.5 -3.81287 | TTTTTTTATTTCATC TTTTGAGGCTC CTTTTGA GAGCCCCAAAA TTTCATAGTAATCTC dnaK-2 551324 - 549426 - | heat shock protein 70 TERM 404 549685 - 549695 + g 74 -4 -5.22289 | ATTTTCTCTCCATAT TCTT TTA AAGA TTTTTCTGTTTGATA grpE 551916 - 551368 - | chaperone protein GrpE TERM 405 551970 - 551984 + H 71 -2.9 -5.58209 | AATATTTTACAAATT TTTTC TTTAT GAAAA TTTTTTTAAATTTGA BRE_525 552280 - 553848 + | NH(3)-dependent NAD synthetase TERM 406 555084 - 555104 + G 100 -13.3 -4.21812 | ATTTAAGATTTGCAT CAGCAGGGG CAC CTCCTGCTG TTGTTTTGAGTGAAA BRE_526 553835 - 555424 + | Response regulator receiver (CheY) modulated Serine phosphatase TERM 407 555513 - 555540 + T 76 -8 -3.71991 | opp_overlap 555515 555518, overlap 555511 555510 555515 555518 CATTAAATGGGATGA TATAATTTCTAT TTTT ATAGAAATTATG TGTATTTTTCTTTAA TERM 408 555515 - 555538 + T 75 -8.4 -3.40971 | opp_overlap 555515 555518, overlap 555513 555511 555510 555518 TTAAATGGGATGATA TAATTTCTAT TTTT ATAGAAATTA TGTGTATTTTTCTTT TERM 409 555538 - 555515 - T 71 -8.4 -2.81966 | opp_overlap 555515 555513 555511 555510 555518, overlap 555518 TTAAATGGGATGATA TAATTTCTAT TTTT ATAGAAATTA TGTGTATTTTTCTTT BRE_527 556031 - 555576 - | hypothetical protein TERM 410 557152 - 557165 + G 80 -3.9 -5.71712 | overlap 557154 AAAGGAAGATGCGTA TCTTT TAGA AAAGA TTTTTTTATCTGAAA BRE_528 556139 - 557947 + | hypothetical protein TERM 411 558042 - 558064 + G 70 -6.4 -4.10453 | opp_overlap 558042 558049, overlap 558059 CAAATATTTTGTAAA CTTAAAACAA AAC TTGATTTAAG TTTTAGAGAGCTTTG TERM 412 558341 - 558357 + G 75 -5.9 -4.67904 | overlap 558343 TTTGATTGCAGATAT TGGTACA GCT TGTACTA TTTTTGCAGTTAGTA BRE_529 557937 - 558731 + | pantothenate kinase BRE_530 559539 - 558709 - | hypothetical protein BRE_531 560131 - 559520 - | hypothetical protein BRE_532 561423 - 560134 - | hypothetical protein phnP 561584 - 562342 + | phnP protein TERM 413 562840 - 562860 + G 77 -6.1 -4.66537 | opp_overlap 562841 562844, overlap 562841 TTGTCCAATCCTAAG ACTAGCAGA GAA TCTGCTGGC TTTTATGTTGAAGAA TERM 414 562841 - 562859 + G 82 -9.6 -3.3944 | opp_overlap 562841 562844, overlap 562840 TGTCCAATCCTAAGA CTAGCAGA GAA TCTGCTGG CTTTTATGTTGAAGA exoA 562354 - 563118 + | exodeoxyribonuclease III TERM 415 563753 - 563768 + G 71 -2.6 -5.54907 | TATTGTAAAATTGTC TAAAGG GGAA CTTTTA TTTTTATTTTATGAA BRE_535 563142 - 563903 + | hypothetical protein TERM 416 566528 - 566512 - g 77 -5.3 -5.16841 | opp_overlap 566512 566512 TTATATTAAGAAAAA TATTATT AAA AATAATA ATATTGCTTCTGAGT BRE_536 563900 - 566725 + | zinc protease, putative; lipoprotein BRE_537 568184 - 566748 - | hypothetical protein TERM 417 568353 - 568369 + r 70 -8.7 -2.62616 | opp_overlap 568364 TCGAACCTACGACTC TCGCCTT AAA AGGGCGA TGCTCTACCAACTGA TERM 418 568517 - 568533 + r 70 -8.7 -2.62396 | opp_overlap 568530 TCGAACCTGTGACCA GCGGGTT AAG AATCCGC TGCTCTGACCACCTG BRE_541 569256 - 568609 - | TPR domain protein BRE_542 569603 - 569253 - | hypothetical protein TERM 419 569647 - 569619 - R 76 -6.2 -4.56597 | opp_overlap 569613 569619 TGTTTCTCCTAAAAA TGAATGCTTA TTTTTATTT TAAGCATTCA TTTTTTATTTTACAT TERM 420 569619 - 569647 + r 100 -6.2 -5.80951 | opp_overlap 569619, overlap 569613 TGTTTCTCCTAAAAA TGAATGCTTA TTTTTATTT TAAGCATTCA TTTTTTATTTTACAT BRE_543 570387 - 569692 - | hypothetical protein fus-1 572481 - 570400 - | translation elongation factor G BRE_545 573018 - 573260 + | hypothetical protein BRE_546 573463 - 574548 + | hypothetical protein BRE_547 574652 - 575203 + | hypothetical protein BRE_548 575258 - 575926 + | hypothetical protein TERM 421 577146 - 577164 + G 82 -9 -3.72592 | opp_overlap 577143 ATTGGAACAAATGCT GTTTATCA TGA TGATAAAC TTCTTAGTAAACCTT prs 576084 - 577304 + | phosphoribosyl pyrophosphate synthetase xylB 577309 - 578673 + | xylulokinase BRE_551 579360 - 578656 - | hypothetical protein coaE 579956 - 579360 - | dephospho-CoA kinase polA 582703 - 579935 - | DNA polymerase I TERM 422 581827 - 581837 + g 87 -2.6 -6.25578 | TTGATTTTTGCATTG TATT TAT AATA TTTTTTTTCTTTAAT BRE_554 583104 - 582700 - | hypothetical protein flaJ 583516 - 583094 - | flagellar protein cheY-1 583937 - 583527 - | chemotaxis response regulator TERM 423 584652 - 584634 - g 70 -3.2 -5.20216 | overlap 584626 584621 TATATTACCAAAAAA GATTTTTT GAA AATAAATC ATACATTAGATGATT lig 584100 - 586109 + | DNA ligase BRE_558 588400 - 586112 - | hypothetical protein TERM 424 586697 - 586721 + g 82 -8.1 -4.62302 | ATTTATTATTTTTTC TATTGAAAGTA AGT TATTTTCAATA TTTTTGAAGCTATTG TERM 425 588756 - 588744 - g 72 -4.9 -4.87626 | TTGTAATATTAAAAA TTCAA TTA TTGAA GATTTTAAGGTGTCA TERM 426 589205 - 589229 + G 82 -8.9 -3.78679 | opp_overlap 589205 589203 589227, overlap 589209 TTTCTAAAGATAAGA TTATTATTAAT TCT ATTAATAATAA TTGTATTAATATTTT TERM 427 589229 - 589205 - g 79 -8.9 -3.49232 | opp_overlap 589205 589209, overlap 589203 589227 TTTCTAAAGATAAGA TTATTATTAAT TCT ATTAATAATAA TTGTATTAATATTTT BRE_559 588685 - 590553 + | hypothetical protein BRE_560 590540 - 591001 + | hypothetical protein TERM 428 591127 - 591096 - g 93 -12 -2.72436 | opp_overlap 591091 591097, overlap 591087 591092 591093 591116 TTATAATGAAATTGA TTTTCATAAAAATT CTGA AATTTTTATGAAAA ATGACTCTGATAGCT BRE_561 590998 - 591858 + | hypothetical protein ptsH-2 592018 - 592278 + | phosphocarrier protein HPr TERM 429 592764 - 592790 + G 73 -8.2 -3.41602 | GGTTAAGAGAGATGT GGTGTTAATT ACTGAAG AATTAACACC TTCTGATACAATGCA TERM 430 592829 - 592856 + G 85 -10 -3.4529 | TAAGTTATGTTAAGG GTTTTATCACCA CGGT TGGTGGTGAAAC TTCTCATGCTGCTAT ptsI 592279 - 594015 + | phosphoenolpyruvate-protein phosphatase crr 594019 - 594588 + | PTS system, glucose-specific IIA component TERM 431 594573 - 594631 + T 100 -7.1 -5.70829 | gap 1, opp_overlap 594585, overlap 594580 594585 TAAAGATATAGTTCT TAGAGTTA-AAAAGTAAGTTCGCATACT CATG AGTATGCGAACTTACTTTTATTTATATA TTTTTTTCTAATATT TERM 432 594580 - 594623 + T 100 -20 -4.44525 | opp_overlap 594585, overlap 594573 594585 ATAGTTCTTAGAGTT AAAAAGTAAGTTCGCATACT CATG AGTATGCGAACTTACTTTTA TTTATATATTTTTTT TERM 433 594585 - 594618 + T 100 -19.9 -5.08878 | opp_overlap 594585, overlap 594580 594573 TCTTAGAGTTAAAAA GTAAGTTCGCATACT CATG AGTATGCGAACTTAC TTTTATTTATATATT TERM 434 594618 - 594585 - T 100 -19.9 -4.70659 | opp_overlap 594585 594580 594573 TCTTAGAGTTAAAAA GTAAGTTCGCATACT CATG AGTATGCGAACTTAC TTTTATTTATATATT htpG 596472 - 594625 - | heat shock protein 90 gnd 596587 - 597981 + | phosphogluconate dehydrogenase, decarboxylating (gnd) BRE_567 598532 - 597996 - | hypothetical protein TERM 435 598434 - 598419 - G 70 -6.2 -4.09827 | opp_overlap 598421 CATAATATAATTAAA TATTGG ATTT CCAATA CTTCCACCAAATCCT BRE_568 599174 - 598656 - | hypothetical protein TERM 436 599350 - 599386 + r 100 -15.6 -4.52589 | opp_overlap 599358 GTATTGATTGTTTTA TTTATAAAGAGAAGTA ATTGA TACTTCTCTTTATAAA TTTTATGTAAACCAA TERM 437 599378 - 599358 - R 82 -8.4 -3.91897 | opp_overlap 599350 TGTTTTATTTATAAA GAGAAGTA ATTGA TACTTCTC TTTATAAATTTTATG BRE_569 599898 - 599389 - | hypothetical protein cheW-2 600237 - 600770 + | purine-binding chemotaxis protein BRE_571 600776 - 601096 + | hypothetical protein cheA-1 601120 - 603261 + | chemotaxis histidine kinase TERM 438 603578 - 603588 + G 75 -5.4 -4.81852 | GAGAATGAAGTTTAT CCAA AAT TTGG TTTTCTTGATTCTAA cheB-2 603323 - 604474 + | protein-glutamate methylesterase TERM 439 605824 - 605812 - g 70 -6.3 -4.20883 | opp_overlap 605812 605811 605816 GAAAAAGTTGTAAAA GATTG TGA CAATC GCTTTTATATTGAAA BRE_574 604453 - 606246 + | hypothetical protein cheY-2 606283 - 606657 + | chemotaxis response regulator TERM 440 607523 - 607535 + G 71 -2.7 -5.40072 | CTTTAGGAATAAGAA GTAAT TTT ATTGC TTTTTTTGAAGACAG BRE_576 606700 - 608043 + | hypothetical protein smbA 608831 - 608142 - | uridylate kinase TERM 441 608928 - 608912 - H 73 -6.7 -4.07885 | opp_overlap 608907 608912 CAGGTTGTTGGAAAA TATGATT TAA AATCATA TTACCTTATTAACTA lgtD 609048 - 610112 + | glycosyl transferase TERM 442 610388 - 610404 + G 82 -5.3 -5.4505 | TTCCAAGAAATCCTT TAAATTT AGT AAATTTA TTTTTTGTTCCGGAA TERM 443 610604 - 610615 + G 72 -5.8 -4.51363 | CTTTCTCTATTGCTA CAGG CGTT CCTG TTTTGATATTTGATG BRE_580 610174 - 610995 + | ABC transporter, ATP-binding protein TERM 444 611031 - 611047 + G 76 -4.5 -5.36689 | TATTTAATATAGATT TTGTTTA TCA TAAGCAA TTTTATTTTTACTTT BRE_581 610988 - 611869 + | hypothetical protein pyrG 612097 - 613752 + | CTP synthase BRE_583 613815 - 614420 + | hypothetical protein TERM 445 614585 - 614561 - g 100 -6.5 -5.75342 | TTTTTGTAAAAAAAA GTCTTCTACAT CTG ATGTTAAAGAC AATTCTTTCAATGAT mcp-1 614529 - 615704 + | methyl-accepting chemotaxis protein TERM 446 616303 - 616321 + G 73 -9 -2.75536 | opp_overlap 616307, overlap 616302 616307 ATAGATTTGATGATG CAAAGAAT GAG ATTCTTTG GTTTAAAAATACTTT TERM 447 617684 - 617668 - g 72 -6.7 -4.21631 | AAGGTATGCAACAAA TTTTGAA AGA TTCAAAA CCCGATAATATTGAA TERM 448 618439 - 618420 - g 74 -2.2 -5.72622 | opp_overlap 618428 GTTATAAATAAAAAA TTTCTTGA GGCT TCAATAAA GTCTGGTCTTTTTGA dnaE 615828 - 619262 + | DNA polymerase III, subunit alpha TERM 449 619575 - 619586 + G 85 -3 -5.94597 | TGGAAGCTTGGGGAA TACT TAGA AGTA TTTTTTTTGCTCTTA BRE_586 619274 - 619846 + | hypothetical protein recG 619856 - 621919 + | DNA recombinase BRE_588 622763 - 621906 - | carboxypeptidase, putative TERM 450 623490 - 623501 + G 73 -3 -5.47846 | ATACATTTTTTATTA GTAT TGCA ATAC TTTTATTTTTTCCTT BRE_589 623204 - 624547 + | hypothetical protein TERM 451 625435 - 625449 + G 71 -7.2 -3.86311 | overlap 625430 GATTACTGTTTTTGT TGCAAA TTA TTTGCA TTTAAATTTGAATAT murD 624572 - 625927 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase femA 626973 - 625924 - | FemA protein TERM 452 626570 - 626580 + g 71 -4 -5.16472 | overlap 626555 626553 TTTGATGGTTGTATA TCAT CAA ATGA TTTTTTGAGATTTTT metG 629175 - 626995 - | methionyl-tRNA synthetase TERM 453 627834 - 627851 + g 81 -7.1 -4.65933 | ATATTTTGTTACCTA TTCTTGA GATA TCAAGAA TTTCTTTTAAAGCTG TERM 454 629989 - 629974 - g 78 -9 -3.15427 | opp_overlap 629974 AATATTTTTGATCAA GAGCCA AAGG TGGCTC TTTTAAGCTTTTCTA TERM 455 629974 - 629989 + G 86 -9 -4.29656 | opp_overlap 629974 AATATTTTTGATCAA GAGCCA AAGG TGGCTC TTTTAAGCTTTTCTA pta 629287 - 630357 + | phosphate acetyltransferase ksgA 631164 - 630340 - | dimethyladenosine transferase BRE_595 632596 - 631199 - | competence locus E, putative TERM 456 632744 - 632754 + GH 87 -2.6 -6.17268 | overlap 632750 TTATTGGTTGTATAG TTTT TTT AAAA TTTTTTTTATTGTGC BRE_596 632595 - 633320 + | hypothetical protein BRE_597 633330 - 635261 + | long-chain-fatty-acid CoA ligase argS 637050 - 635293 - | arginyl-tRNA synthetase TERM 457 635887 - 635902 + g 71 -7.6 -3.67417 | TTCTCTTGATTTCAT TTTGCC CTCA GGCAAA TTTACCATTCCATAT TERM 458 636980 - 636996 + g 80 -5.2 -5.22104 | TCTAATTTGATATTT GAACTT AATGC AAGTTC TTTTATTGTTTTTTG BRE_599 637621 - 637043 - | hypothetical protein mcp-2 639853 - 637637 - | methyl-accepting chemotaxis protein TERM 459 639583 - 639593 + g 71 -4 -5.10765 | TAGTTATGATATTTT TGAA ATG TTCA TTTTGTTGTTTATTT TERM 460 641388 - 641364 - g 71 -8.7 -2.85999 | opp_overlap 641363 641364 TGATGGTATAGGAGA TGCTTTTTCTA AAT TTGAAAAAGCA GTTATGAATATTTTA TERM 461 641364 - 641388 + G 70 -8.7 -2.67709 | opp_overlap 641364, overlap 641363 TGATGGTATAGGAGA TGCTTTTTCTA AAT TTGAAAAAGCA GTTATGAATATTTTA mcp-3 640009 - 642249 + | methyl-accepting chemotaxis protein murB 643204 - 642251 - | UDP-N-acetylmuramate dehydrogenase TERM 462 642702 - 642717 + g 74 -6.2 -4.60143 | overlap 642697 ATAAAATTTCCATTT TCATCT ATGA AGATGA TTTTATCTAATATGT cysS 643358 - 644815 + | cysteinyl-tRNA synthetase TERM 463 645182 - 645203 + G 86 -5.9 -5.40072 | opp_overlap 645181, overlap 645199 GTTCCAATAAAACTT GAAAAAGAC AATA GTCCTTTTC TTTTTTTAGAGGAAA TERM 464 645568 - 645581 + G 74 -2.5 -5.65927 | opp_overlap 645568 TGAAATATTAGATAA TATTA ATTT TAATA TTTTTTATTTAAGTC TERM 465 646238 - 646220 - g 73 -9 -2.70766 | overlap 646219 646222 AATATGTCAGAGAAT TATATCCA TTA TGGATATA GAGAAGATTATGATA BRE_604 644819 - 646372 + | hypothetical protein glyA 646362 - 647615 + | serine hydroxymethyltransferase dnaJ 647630 - 648394 + | chaperone protein DnaJ TERM 466 648482 - 648451 - T 100 -14.8 -4.11394 | opp_overlap 648434 648451 ATTTTATGGGTAAAA TTGTTTAAAGAGTA AATT TACTCTTTAAACAA TTTTTTTTATTAAGA TERM 467 648451 - 648482 + T 100 -14.8 -6.09888 | opp_overlap 648451, overlap 648434 ATTTTATGGGTAAAA TTGTTTAAAGAGTA AATT TACTCTTTAAACAA TTTTTTTTATTAAGA BRE_607 650330 - 648492 - | membrane-associated protein P66 TERM 468 649029 - 649040 + g 86 -5.8 -5.5208 | opp_overlap 649029 ATAATTAATTCCAAA TCCG ATGC CGGA TTTTTTATCTTGTGC TERM 469 650488 - 650520 + rH 86 -10.8 -3.43604 | opp_overlap 650492 650495, overlap 650492 TATGTATAGATTATT CAAATAAGACCAAC TATTT GTTAGTCTTATTTG TTAATATTATGATAT TERM 470 650516 - 650492 - RH 76 -8 -3.70863 | opp_overlap 650488 650492, overlap 650495 TATAGATTATTCAAA TAAGACCAAC TATTT GTTAGTCTTA TTTGTTAATATTATG lctP 652089 - 650554 - | L-lactate permease TERM 471 650682 - 650702 + gH 73 -9.1 -2.51702 | overlap 650681 650684 CGATTGTTATGTTTT GAGGAGAAA TCA TTTTTCCTC CTGTTGCTCCTGTTG TERM 472 651220 - 651236 + gH 80 -6.5 -4.86773 | overlap 651221 AATATATGGCATGCA GGCAAGG AAT CCTTGCA TTTTTGATACTTTTA TERM 473 651221 - 651235 + gH 85 -10 -3.50437 | overlap 651220 ATATATGGCATGCAG GCAAGG AAT CCTTGC ATTTTTGATACTTTT TERM 474 651803 - 651815 + gH 81 -7.7 -4.60797 | overlap 651796 ATTTGCATGTCATTT TGGCT TTC AGCCA TTTTATATGTAAAAA TERM 475 652106 - 652143 + GH 70 -5.3 -4.58563 | gap 1, opp_overlap 652120 652122, overlap 652103 652138 TAATTCTATAACAAA TTTTTATGCAAT-AATAT ACA ATATTTATTGTATGAAAA TTATTTTTATCATTA dacA 652059 - 653060 + | serine-type D-Ala-D-Ala carboxypeptidase BRE_610 653314 - 653817 + | chemotaxis protein CheD pepD 653996 - 655417 + | aminoacyl-histidine dipeptidase tig 655947 - 657293 + | trigger factor clpP-1 657293 - 657892 + | ATP-dependent Clp protease proteolytic component clpX 657915 - 659204 + | ATP-dependent Clp protease, subunit X lon-2 659149 - 661587 + | ATP-dependent protease LA TERM 476 661793 - 661760 - T 100 -8.3 -6.82077 | opp_overlap 661762 661766, overlap 661762 661766 ACTAAAAAAAAAAAA GATAAATAGCATGAC TAGA GTCATGCTATTTGTT ACATTACGCTCTCTT TERM 477 661791 - 661762 - T 100 -10.9 -5.0189 | opp_overlap 661762 661766, overlap 661760 661766 TAAAAAAAAAAAAGA TAAATAGCATGAC TAGA GTCATGCTATTTG TTACATTACGCTCTC TERM 478 661762 - 661791 + T 100 -13.1 -3.1875 | opp_overlap 661762 661760 661766, overlap 661766 TAAAAAAAAAAAAGA TAAATAGCATGAC TAGA GTCATGCTATTTG TTACATTACGCTCTC TERM 479 661766 - 661787 + T 100 -11.7 -4.2528 | opp_overlap 661762 661760 661766, overlap 661762 AAAAAAAAAGATAAA TAGCATGAC TAGA GTCATGCTA TTTGTTACATTACGC TERM 480 661787 - 661766 - T 100 -11.7 -4.80846 | opp_overlap 661766 661762, overlap 661762 661760 AAAAAAAAAGATAAA TAGCATGAC TAGA GTCATGCTA TTTGTTACATTACGC rpsD 662423 - 661797 - | 30S ribosomal protein S4 BRE_622 663839 - 662571 - | hypothetical protein BRE_623 663941 - 664324 + | hypothetical protein cdd 664815 - 664360 - | cytidine deaminase BRE_625 664949 - 665908 + | hypothetical protein BRE_626 667553 - 665898 - | beta-glucosidase, putative TERM 481 666440 - 666452 + g 70 -4.9 -4.79955 | TGTTTCTTTTTTCTT TTAGA TAT TCTAA TTTTATTCTAAGTAT thiJ 667864 - 668409 + | 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein ackA 669729 - 668503 - | acetate kinase mfd 673117 - 669740 - | transcription-repair coupling factor TERM 482 672892 - 672908 + g 73 -4.5 -5.02715 | CGTATATTTGATCTG TGATTTG TGT TAAATCA TTTTTAATTTCATCT BRE_631 673216 - 674178 + | hypothetical protein TERM 483 674313 - 674276 - gT 77 -9.5 -2.9162 | overlap 674278 674280 GAAGTTGTCAAAGGA GATACTTTATATTCAAT TTCT ATTAAATATAAGGTATC AGTAAAAGAACTTAA BRE_632 674114 - 676213 + | N-acetylmuramoyl-L-alanine amidase, putative TERM 484 676349 - 676360 + T 77 -2.2 -5.88565 | CCGGAGGTTCAAGTC CTTC TGGG GGAG TTTTTTTATTGTAAA pepX 678171 - 676903 - | vacuolar X-prolyl dipeptidyl aminopeptidase I TERM 485 678160 - 678170 + g 70 -5.4 -4.57581 | TGATATATCTAATGT TGCA TCA TGCA TTTGTTCTTTCCCCT TERM 486 678615 - 678593 - g 78 -7.8 -4.39426 | overlap 678594 678607 GATAGTTTGATAAAA GTTGCAAGAT ATT ATCTTGCAAA AGAAAATCTGCCTTT TERM 487 678614 - 678594 - g 93 -11.3 -3.23174 | overlap 678593 678607 ATAGTTTGATAAAAG TTGCAAGAT ATT ATCTTGCAA AAGAAAATCTGCCTT BRE_635 678275 - 679000 + | putative lipoprotein TERM 488 679059 - 679032 - T 73 -8.6 -3.19634 | opp_overlap 679031 679034, overlap 679031 679025 679034 ATTTCAAATATAAAT GAGAGATAAGAA TTAT TTCTTATCTCTT TTCATAAATCCTATT TERM 489 679034 - 679057 + T 95 -11.2 -4.28994 | opp_overlap 679034 679032 679031 679025, overlap 679031 TTCAAATATAAATGA GAGATAAGAA TTAT TTCTTATCTC TTTTCATAAATCCTA TERM 490 679057 - 679034 - T 86 -11.2 -3.15228 | opp_overlap 679031 679034, overlap 679032 679031 679025 TTCAAATATAAATGA GAGATAAGAA TTAT TTCTTATCTC TTTTCATAAATCCTA fruA-2 680903 - 679044 - | PTS system, fructose-specific IIABC component TERM 491 680982 - 680954 - H 71 -8.5 -3.11484 | opp_overlap 680954 680952 680962, overlap 680952 680949 ATAATAGAAATTATA TATTACAATTATA TCA TATAATTATAATA TGTTAAGTTGTTTAA TERM 492 681041 - 680983 - H 100 -17.5 -3.36715 | gap 1, opp_overlap 680952 680989, overlap 680952 680949 680984 CATATAATTATAATA TGTTAAGTTGTTTAATTGTATTACTTAA TTAA TTAAGTAATACAATTAAACAACTTAAT- AATAAAGGAGACTTA TERM 493 681041 - 680984 - H 100 -23.5 -2.61306 | opp_overlap 680989, overlap 680949 680983 ATATAATTATAATAT GTTAAGTTGTTTAATTGTATTACTTAA TTAA TTAAGTAATACAATTAAACAACTTAAT AATAAAGGAGACTTA TERM 494 680989 - 681036 + H 100 -23.4 -3.21099 | opp_overlap 680983 680984 ATTATAATATGTTAA GTTGTTTAATTGTATTACTTAA TTAA TTAAGTAATACAATTAAACAAC TTAATAATAAAGGAG TERM 495 681462 - 681477 + G 71 -7.6 -3.62859 | overlap 681452 TATGTCTGGGAGTAT TCCAAG TTCA CTTGGA TTTAGAGCTTATAAT fruK 681058 - 681975 + | 1-phosphofructokinase recD 683994 - 682168 - | exodeoxyribonuclease V, alpha chain TERM 496 682724 - 682734 + g 78 -2.6 -5.82281 | TTGAAATTAGGAATG TTAT TGT ATAA TTTTTTTGTATGTTT TERM 497 683054 - 683070 + g 82 -9.5 -3.40593 | opp_overlap 683066, overlap 683058 683059 683064 CTTAAAAAGGTATTT GCATCTA TCA TAGATGC TTCATCTATTATAAT recB 687446 - 684003 - | exodeoxyribonuclease V, beta chain TERM 498 685421 - 685436 + g 72 -4.8 -4.84353 | GGCTTGATTCATAGT TTTGAA GTTC TTCAAA TTTATTTTCATTTAT TERM 499 686070 - 686092 + g 100 -10.8 -4.6645 | AGGTTCAGTTTGCAG TTGAACAAAT TCT ATTTGTTCAA TTTTATCTGTGTGTG recC 690665 - 687453 - | exodeoxyribonuclease V, gamma chain TERM 500 690415 - 690425 + g 78 -2.6 -5.88197 | overlap 690420 AAAAGCAAAGTATTG TTTT CTA AAAA TTTTTTTATATTTGG BRE_642 692115 - 690670 - | nicotinate phosphoribosyltransferase TERM 501 690952 - 690965 + g 91 -2.5 -6.32017 | overlap 690961 GATTGTAAATTGTTT TTTTA AATT TAAAA TTTTTTTTATTTCTT TERM 502 691863 - 691881 + g 91 -7.6 -5.252 | opp_overlap 691862 TATTTAATTTAAATG TTTTTAGA TAT TCTAAAAA TTTTTTATCAAAATA zwf 692286 - 693719 + | glucose-6-phosphate 1-dehydrogenase TERM 503 694681 - 694668 - g 70 -5.3 -4.56358 | GATAGTCATATAAAA CCAAA CTTT TTTGG GCTTGTTCCTTTTCT nhaC-2 694644 - 695969 + | Na+/H+ antiporter TERM 504 696004 - 695971 - T 70 -7.7 -3.56836 | gap 1, opp_overlap 695976 695978, overlap 695976 AAATCAGTTTTTAAA TTTA-ATAGGCACTTT TTT AAAGTGCCTATGTTAA GATGATATTTCTACA TERM 505 695976 - 695998 + T 100 -13.6 -3.07787 | opp_overlap 695971 695976, overlap 695978 AGTTTTTAAATTTAA TAGGCACTTT TTT AAAGTGCCTA TGTTAAGATGATATT TERM 506 695998 - 695976 - T 100 -13.6 -3.27704 | opp_overlap 695976 695978, overlap 695971 AGTTTTTAAATTTAA TAGGCACTTT TTT AAAGTGCCTA TGTTAAGATGATATT TERM 507 695978 - 695996 + T 90 -11.8 -3.09289 | opp_overlap 695976 695971, overlap 695976 TTTTTAAATTTAATA GGCACTTT TTT AAAGTGCC TATGTTAAGATGATA potD 697056 - 696001 - | spermidine/putrescine ABC transporter, binding periplasmic protein TERM 508 696447 - 696460 + g 70 -3.1 -5.25656 | overlap 696444 AGAAATAGCCTACTA CTAAG GAGA CTTGG TTTTTTAGTAGTTTT potC 697859 - 697068 - | spermidine/putrescine ABC transporter, permease protein TERM 509 697846 - 697830 - G 70 -5.3 -4.62471 | opp_overlap 697830 GCTAAGTGTCAAAAA TAAAAAA GTA TTTTTTA ATATTTTAAGCATGT potB 698672 - 697869 - | spermidine/putrescine ABC transporter, permease protein potA 699721 - 698678 - | spermidine/putrescine ABC transporter, ATP-binding protein TERM 510 699382 - 699397 + g 84 -3.4 -5.7946 | TGACTTTTTCTTTGA TTAAAT TTTT ATTTAA TTTTTTTATTCGCAG BRE_649 700683 - 699808 - | conserved hypothetical GTP-binding protein TERM 511 700291 - 700301 + g 74 -2.6 -5.72622 | TGGGACTCCAATTAC TAAA ACT TTTA TTTTTTCTTTATAAG TERM 512 701373 - 701394 + G 70 -5.9 -4.27584 | opp_overlap 701371 AAGGCAAAATTGATA CTCCTCTTA AGGC TAAGAGAAG TTTTGAGTTGGGAGT BRE_650 700835 - 701500 + | N-acylglucosamine-6-phosphate 2-epimerase TERM 513 701557 - 701580 + G 75 -6 -4.69326 | opp_overlap 701561 GGGGAGATTTTTTCA GAATGCCCAA AAAT TTGGTCGTTC TTTTATGTTGCCTAT TERM 514 701605 - 701617 + G 78 -7.7 -4.42235 | overlap 701603 GCCTATTGCCATTCT TCCTG CGG CAGGA TTATTTTTAGGAATT TERM 515 701671 - 701686 + G 71 -2.6 -5.4833 | AACTATTAGTACTTA TACATT TTTA GATGTA TTTTTTCTTCAATCA TERM 516 702013 - 702028 + G 82 -5.4 -5.42862 | overlap 702014 TAATAAAGTTGAATT TCCAAG AGTA CTTGGG TTTTTTTCAGGATCT ptsG 701540 - 703099 + | PTS system, glucose-specific IIBC component TERM 517 703108 - 703135 + T 100 -7.9 -6.18768 | gap 1, opp_overlap 703104 AAATTAAAATTTTAA GCAAGTGTATGT TTTTT ACAT-CACTTGC TTTTTTTTATGTTTT BRE_652 704114 - 703128 - | hypothetical protein TERM 518 703890 - 703903 + g 70 -2.3 -5.52347 | ACCGTGAATATATAC CACTG CATA CTGTG TTTTTTCCTTTTCTT TERM 519 704106 - 704090 - G 78 -2.4 -5.77734 | opp_overlap 704090 AAATAAAAATAAAAA TAAAAA TTGCG TTTTTA ATGTTCATATATTTT fur 704645 - 704127 - | ferric uptake regulation protein BRE_654 706431 - 704737 - | serine/threonine kinase, putative TERM 520 705640 - 705628 - G 70 -4.9 -4.68593 | TTTATTAGTTAAAAA TTCTT TTA AAGAA GCTTCATTTATTTGA TERM 521 706371 - 706357 - G 71 -7.2 -3.75479 | opp_overlap 706353 TAAAATGGAATATAA TTTGCT CTC AGCAAA TGAAGTTATTGAAAC TERM 522 706392 - 706376 - G 74 -8.1 -3.56704 | CTCTCAGCAAATGAA GTTATTG AAA CAATAAC AATATAAATTTTTGA TERM 523 707144 - 707133 - g 73 -4.4 -5.09173 | CAATAGGTGAAAAAA TTGC AGAA GCAA TGGACAGAGTTGGCA TERM 524 707756 - 707738 - g 91 -6.8 -5.40464 | TATGACAAAGAAAAA TTACAAGA ACG TCTTGCAA AACTTGTTGGTGGTG groEL 706652 - 708286 + | heat shock protein TERM 525 708475 - 708490 + G 78 -7.6 -4.37092 | opp_overlap 708474 708475 TGGATTTTATAGAAG CGCTTT TAGT AAAGCG TTTTATAGGAAAGAT TERM 526 708572 - 708589 + G 93 -11.3 -3.65754 | opp_overlap 708572, overlap 708586 ACTTATAGTAGAAAA GAGGAGC TTGA GCTCCTC TTTGGGGTAATTTAT TERM 527 708589 - 708572 - g 100 -11.3 -4.51378 | opp_overlap 708572 708586 ACTTATAGTAGAAAA GAGGAGC TTGA GCTCCTC TTTGGGGTAATTTAT BRE_656 708347 - 708643 + | hypothetical protein yajC 708659 - 708982 + | preprotein translocase YajC subunit secD 709063 - 710826 + | protein-export membrane protein TERM 528 710859 - 710849 - g 70 -5.4 -4.5081 | opp_overlap 710849 710847 AAATATGGAAATAAA GCTA TTA TAGC TAGTTTTTGTATGAT secF 710810 - 711706 + | protein-export membrane protein BRE_660 711730 - 712881 + | hypothetical protein TERM 529 712860 - 712883 + T 100 -6.2 -5.62045 | opp_overlap 712860 GCAAAGTTTGAAAAA TTTTGAACAA TTAT TTGTTTAAAA TTTTTTATTATATAT dnaJ-2 713726 - 712878 - | heat shock protein TERM 530 713163 - 713175 + g 72 -4.9 -4.92314 | overlap 713171 TTCTAAATTTCGATC CTTTA GTG TAAAG TTTTTATAACTTGAT TERM 531 714602 - 714618 + G 95 -7.3 -5.38054 | overlap 714594 TTTAGGTCTTGGCTT GCAAGCT GTT AGTTTGC TTTTTGTTTCTGAGA BRE_662 713847 - 714986 + | HemN-related protein rpi 715659 - 714973 - | ribose 5-phosphate isomerase A gpmA 715882 - 716634 + | phosphoglycerate mutase TERM 532 716651 - 716692 + T 83 -11.3 -2.66098 | opp_overlap 716657, overlap 716654 716657 AAACAGAGCAAACGT TAATAAGAAGAGATTAT TAATAAAT ATGATCTCTTCTTATTA TAAATTTCAAATATT TERM 533 716654 - 716689 + T 75 -8.6 -3.47617 | opp_overlap 716657, overlap 716651 716657 CAGAGCAAACGTTAA TAAGAAGAGATTAT TAATAAAT ATGATCTCTTCTTA TTATAAATTTCAAAT lysS 718318 - 716720 - | lysyl-tRNA synthetase era 719240 - 718368 - | GTP-binding protein BRE_667 719337 - 719684 + | hypothetical protein BRE_668 719697 - 720104 + | hypothetical protein BRE_669 720101 - 720535 + | hypothetical protein BRE_670 721196 - 720537 - | hypothetical protein TERM 534 721001 - 721011 + g 71 -4 -5.08878 | overlap 721005 TAATGGTTTTTGATA TGAT GAA ATCA TTTTCTTTATCTATT TERM 535 721073 - 721083 + g 80 -5.4 -5.19879 | TTTTAATTCTTTTGT CGTA AGT TACG TTTTTATCTTTACAA BRE_671 721242 - 722201 + | hypothetical protein TERM 536 722457 - 722477 + GF 71 -7.7 -3.58533 | GAAAGCTTTGATGCA GATTGAAAA TTA TTTTCGATC TTTGCAAAGTTATAG BRE_672 722164 - 723189 + | N-acetylmuramoyl-L-alanine amidase TERM 537 723338 - 723353 + G 70 -6.2 -4.08189 | opp_overlap 723337 723338 TGTAATTATGATAAT CTTTTC TTTA GAAAAG TATTTTATTTCCATT BRE_673 723170 - 723718 + | hypothetical protein flaA 723795 - 724844 + | flagellar filament outer layer protein TERM 538 725620 - 725636 + G 71 -7.3 -3.74526 | opp_overlap 725610 725620 725617, overlap 725610 GAAAAGATAAATTTA TCTGATG TTG CGTCAGA TTATTCAATTAATGA cheA-2 724915 - 727506 + | chemotaxis histidine kinase TERM 539 728698 - 728726 + G 74 -6.1 -4.59511 | CAGATGCCATTTTAT CAGAATTTCCAGA AAA TTTGGGAATTGTG TTTTTAAGAGATATT cheW-3 727512 - 728909 + | purine-binding chemotaxis protein CheW cheX 728921 - 729406 + | chemotaxis protein CheX cheY3 729455 - 729895 + | chemotaxis response regulator BRE_679 730423 - 729908 - | hypothetical protein BRE_680 731469 - 730420 - | hypothetical protein BRE_681 732326 - 731463 - | hypothetical protein gph 733009 - 732323 - | phosphoglycolate phosphatase TERM 540 732641 - 732674 + g 74 -6.9 -4.42765 | overlap 732642 TTCTTCATGGTTTTT ATTACTTAAAATTCC AATA GGGATTTTAAGTGAG TTTAGTTTTTTCAAA TERM 541 732642 - 732673 + g 86 -10.4 -3.24575 | overlap 732641 TCTTCATGGTTTTTA TTACTTAAAATTCC AATA GGGATTTTAAGTGA GTTTAGTTTTTTCAA mglA 733193 - 734776 + | ribose/galactose ABC transporter, ATP-binding protein rbsC-1 734780 - 735928 + | ribose/galactose ABC transporter, permease protein rbsC-2 735900 - 736826 + | ribose/galactose ABC transporter, permease protein mcp-4 736994 - 739201 + | methyl-accepting chemotaxis protein mcp-5 739231 - 741138 + | methyl-accepting chemotaxis protein TERM 542 741135 - 741171 + T 71 -6.8 -3.93038 | opp_overlap 741136 741140, overlap 741136 741140 741167 TTTTAAGATTGATCA ATAAACCTATAGAAAT AAATG ATTACTATAGGTTTAA TTTGATATTAAAATA TERM 543 741136 - 741170 + T 79 -10.3 -2.95341 | opp_overlap 741136 741140, overlap 741135 741140 741167 TTTAAGATTGATCAA TAAACCTATAGAAAT AAATG ATTACTATAGGTTTA ATTTGATATTAAAAT TERM 544 741170 - 741136 - T 81 -10.3 -3.2218 | opp_overlap 741136 741135 741140 741167, overlap 741140 TTTAAGATTGATCAA TAAACCTATAGAAAT AAATG ATTACTATAGGTTTA ATTTGATATTAAAAT TERM 545 741166 - 741140 - T 74 -6.7 -4.26202 | opp_overlap 741140 741136 741135, overlap 741136 AGATTGATCAATAAA CCTATAGAAAT AAATG ATTACTATAGG TTTAATTTGATATTA TERM 546 741140 - 741166 + T 73 -6.7 -4.14345 | opp_overlap 741136 741140, overlap 741136 741135 AGATTGATCAATAAA CCTATAGAAAT AAATG ATTACTATAGG TTTAATTTGATATTA BRE_688 742258 - 741194 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 547 742735 - 742749 + GH 93 -10 -4.47183 | AAGCTCAGCATGCTT GTGCAG GGA CTGCAC TTTCTTTGCATAGTG TERM 548 743468 - 743485 + GH 75 -3.5 -5.42259 | AAGGCACAATGCAAA TTTTGAT GAAT ATCGAAA TTTTTTTGAAAATAA BRE_689 742356 - 743582 + | 3-hydroxy-3-methylglutaryl-CoA synthase BRE_690 743551 - 744630 + | isopentenyl-diphosphate delta-isomerase mvaA 744620 - 745870 + | 3-hydroxy-3-methylglutaryl-CoA reductase mvaD 745872 - 746813 + | mevalonate pyrophosphate decarboxylase TERM 549 747184 - 747212 + G 73 -8.5 -3.1352 | opp_overlap 747190 747202, overlap 747182 747181 747190 AATTTTAAATGGTAA TAAAAATTTTATT AAA GATAAAATTTTTA TGTATTGCCTTGAAG BRE_693 746801 - 747742 + | phosphomevalonate kinase, putative TERM 550 748375 - 748408 + G 71 -7.7 -3.5256 | gap 1, overlap 748373 TAAGCGAGATATTGA TTTGTTGGCAAATAAT ATT AATAT-TGCCAACAAA TATTTAAGTTCTTTA mvaK 747743 - 748636 + | mevalonate kinase BRE_696 749340 - 748888 - | hypothetical protein napA_2 749410 - 749913 + | neutrophil activating protein TERM 551 750037 - 750018 - f 72 -6.5 -4.25681 | opp_overlap 750018 ATTTAATTGAATAAA GCTATAG CACGAT CTATAGC TTTTTAGTGTTTGAG TERM 552 750018 - 750037 + F 82 -6.5 -4.93696 | opp_overlap 750018 ATTTAATTGAATAAA GCTATAG CACGAT CTATAGC TTTTTAGTGTTTGAG TERM 553 750396 - 750380 - g 77 -9.5 -2.79188 | overlap 750377 GATGGAATTCAAGCA CAAACTG AAA CAGTTTG GAAACAGGCATCAAA fus-2 750044 - 752068 + | translation elongation factor G TERM 554 752301 - 752311 + F 81 -2.6 -6.09196 | TTTGATATTATGTCT TATT ATT AATA TTTTTTTATTTTAAA xylR-1 752345 - 753553 + | xylose operon regulatory protein TERM 555 753539 - 753560 + F 82 -3.1 -5.84432 | TTTTATTTGACAGGG GGAGATATT GATT AATATTTTC TTTTTTTGTATTGTA ffh 753613 - 754962 + | signal recognition particle protein rpsP 754959 - 755210 + | 30S ribosomal protein S16 BRE_702 755220 - 755468 + | hypothetical protein rimM 755472 - 755972 + | 16S rRNA processing protein RimM trmD 755969 - 756691 + | tRNA-(guanine-N1)-methyltransferase rplS 756666 - 757034 + | 50S ribosomal protein L19 TERM 556 757337 - 757356 + F 72 -3 -5.38398 | CTATTTCTTTTCGAT TAAAAAAG ATGA TTTTTTTA TTTTTATCTTTTTAT TERM 557 758329 - 758339 + G 70 -5.4 -4.58395 | opp_overlap 758329 TTGATAGGTTAAAAT CTGA AAG TCAG TTTTTAAAAAATGAA BRE_706 757965 - 758525 + | hypothetical protein kdtB 758528 - 759025 + | pantetheine-phosphate adenylyltransferase TERM 558 759018 - 759047 + F 72 -8.9 -2.51381 | opp_overlap 759017 759018 759020, overlap 759013 759007 759020 AATTTATTGACAAAT TATCTTGATAATA TATA TATTATTAAGATA CGTTTGTTGATGTTT TERM 559 759156 - 759138 - g 71 -7.5 -3.57406 | opp_overlap 759138 759137 759150, overlap 759136 759150 GGCGCAGTATAAATA TGAGGAA AAAAA TTCCTCA ATTTCAGGAATGTTC TERM 560 759166 - 759150 - g 79 -3.7 -5.56568 | opp_overlap 759138 759137 759150, overlap 759138 759136 ATATGAGGAAAAAAA TTCCTCA ATT TCAGGAA TGTTCAAATTGCGGT rpmF 759077 - 759259 + | 50S ribosomal protein L32 BRE_709 759261 - 759524 + | acyl carrier protein TERM 561 759954 - 759978 + G 72 -5.7 -4.4648 | overlap 759955 759957 759974 GTGCACTTTATCTTG ATGGGGGCTTT TCA AAAGCCTCTAC TTTTGTGGTAGAACT TERM 562 759955 - 759977 + G 78 -9.2 -3.27406 | overlap 759954 759957 759974 TGCACTTTATCTTGA TGGGGGCTTT TCA AAAGCCTCTA CTTTTGTGGTAGAAC TERM 563 759957 - 759975 + G 79 -9.6 -3.20028 | overlap 759955 759954 759974 CACTTTATCTTGATG GGGGCTTT TCA AAAGCCTC TACTTTTGTGGTAGA rnc 759530 - 760261 + | ribonuclease III papS 761531 - 760233 - | tRNA nucleotidyltransferase (CCA-adding enzyme) TERM 564 760264 - 760276 + g 72 -4.9 -4.82212 | TATTGATCTTTAATC TTTTG AAG CAAAA TTTCTTTCTTATTTA TERM 565 760697 - 760738 + g 86 -2 -6.15536 | gap 1, opp_overlap 760697 760698 760701, overlap 760698 760702 760707 TTATAGTAAAAATAA CTATTGCTTTTAAATAAAA TTTAT TTTTATTTAAAAG-AGTAA TTTTTTTTATTAATT TERM 566 760707 - 760719 + g 72 -3.5 -5.27335 | opp_overlap 760701 760698 760697, overlap 760702 760698 760697 AATAACTATTGCTTT TAAAT AAA ATTTA TTTTTATTTAAAAGA TERM 567 761282 - 761300 + g 77 -7.6 -4.20354 | opp_overlap 761286, overlap 761273 761286 TTTGTATATTTTTTG GAAATAAT TTC ATTATTTC TTTTGGAGTTGCATT BRE_712 761696 - 763348 + | hypothetical protein TERM 568 763644 - 763658 + G 70 -2.9 -5.1963 | TTATTTGTTTTTGTT CTTTT TTTAT AAAAG TTTTTCTTGATTAGG BRE_713 763355 - 763672 + | hypothetical protein TERM 569 763790 - 763774 - f 70 -8.7 -2.63715 | opp_overlap 763789, overlap 763788 AGTCAGGCCAGAGCA GCGGTCT TGT AAACCGC TGGCCGTCGGTTCGA TERM 570 763789 - 763819 + F 86 -9.6 -3.86346 | opp_overlap 763774 763788 GCGGTCTTGTAAACC GCTGGCCGTCGGTT CGA ATCCGACAGTCGGC TTTATGGGGCGGTAC TERM 571 764140 - 764166 + G 74 -3.8 -5.36364 | overlap 764141 764146 GATTTTGTATTCTTA TGGTAATAAAAA AGA TTTTTATTTCCC TTTTTGTGTTTTTGC TERM 572 764141 - 764165 + G 71 -7.3 -3.79378 | overlap 764140 764146 ATTTTGTATTCTTAT GGTAATAAAAA AGA TTTTTATTTCC CTTTTTGTGTTTTTG TERM 573 765043 - 765062 + G 78 -4.4 -5.55769 | opp_overlap 765052 CAGCAGCCTTTTTCC CAGATAAT ACAA ATTATTTG TTTTTTGTTATAAAA BRE_716 764139 - 765173 + | hypothetical protein dnaG 765181 - 766956 + | DNA primase TERM 574 768520 - 768490 - g 91 -9.9 -4.01315 | AAAAACCGTAAAGAA TGTTTCAAGAGAA CCTGT TTCACTTGAAACA CCAATTGGAGAAGAA rpoD 766949 - 768841 + | RNA polymerase sigma-70 factor BRE_719 768838 - 769614 + | hypothetical protein TERM 575 769814 - 769796 - f 75 -7.4 -4.14392 | opp_overlap 769795 GGGTAAGGGTGAAAA GGTGAGGT AAG AGCTCACC GCTTATTTAGTGATA BRE_720 770009 - 770974 + | hypothetical protein TERM 576 770984 - 771003 + F 75 -4.4 -5.17353 | TTTTAGAGGGAGATT GATTTGAA TTTT TTTAAATC TTTTTTGATAGATAT mreB-1 770987 - 772036 + | rod shape-determining protein mreC 772039 - 772884 + | rod shape-determining protein BRE_723 772881 - 773363 + | hypothetical protein pbp-2 773369 - 775168 + | penicillin-binding protein mreB-2 775172 - 776491 + | rod shape-determining protein TERM 577 777253 - 777267 + G 79 -5 -5.47218 | opp_overlap 777253 CTGTTCATGATGAGA TAGGAC CTG GTCTTA TTTTTTTCCATCCAC TERM 578 778341 - 778356 + G 70 -7.6 -3.33265 | opp_overlap 778338, overlap 778345 CAAATTAATGGACTT GAGCTT AAAG AAGCTC TTGAATTTGTGAAGT thrZ 776649 - 778400 + | threonyl-tRNA synthetase BRE_727 778402 - 779025 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 579 779437 - 779425 - g 79 -3.5 -5.61277 | TATAAAAAAACAAAA TAAAA CTT TTTTA TTAAGAGATTTGCCA BRE_728 779006 - 780454 + | hypothetical protein BRE_729 780952 - 780431 - | adenylyl cyclase, CyaB-type, putative TERM 580 780522 - 780536 + g 81 -8.6 -4.10085 | opp_overlap 780521 ATTGTTTTGTAAATT TCTTGC TTG GCAAGA TTTAATTCATTTTTA TERM 581 780623 - 780642 + g 79 -3.6 -5.69023 | TTCTATATTTAAATT GTCTTTTT TATA AATAAGAC TTTTTTTAATCTTTT TERM 582 781522 - 781534 + G 80 -7.7 -4.46212 | overlap 781529 TGAGGCTTTATTTAC TGCTG TTT CAGCA TTTTGTAATGCAGGG ntpJ 781043 - 782362 + | K transport protein BRE_731 782369 - 783151 + | hypothetical protein ylxH-3 783164 - 784135 + | MinD-related ATP-binding protein pfk 784172 - 785515 + | pyrophosphate--fructose 6-phosphate 1-phosphotransferase (pfk) nox 786872 - 785541 - | NADH oxidase, water-forming TERM 583 785785 - 785809 + g 77 -6.5 -4.7033 | overlap 785786 GGATAATAGTTTGTA TGGTTTTTATC TTT GATAAATACCG TTTTATATTGGATTC TERM 584 785786 - 785808 + g 70 -7.8 -3.41114 | overlap 785785 GATAATAGTTTGTAT GGTTTTTATC TTT GATAAATACC GTTTTATATTGGATT gltP 788267 - 786885 - | glutamate transporter TERM 585 788067 - 788077 + g 70 -5.4 -4.51763 | TCCTATGATATTAGT CCAT TGA ATGG TTTCTTGTATTATTG pgi 789885 - 788311 - | glucose-6-phosphate isomerase BRE_737 790326 - 789922 - | hypothetical protein pbp-3 793110 - 790333 - | penicillin-binding protein TERM 586 792515 - 792533 + g 77 -6.1 -4.63218 | opp_overlap 792498 792524, overlap 792498 AAAACAGCTTCTGCG GTGTTAA TATCT TTAACAC TTTTGTTGAAGAAAA BRE_739 793600 - 794388 + | hypothetical protein BRE_740 794372 - 795484 + | TPR domain protein BRE_741 796496 - 795492 - | hypothetical protein TERM 587 796265 - 796283 + g 75 -6 -4.75934 | AAATCATAGCACTAT CTGGTATA TAT TCTACCAG TTCTTTTATTTTTTC TERM 588 796737 - 796756 + G 70 -5.7 -4.30576 | GCTACTGTAGGGCTT GCTTCGT GGTATG GCGAAGC TTTTCATGGTAAGAC rlpA 796596 - 797426 + | rare lipoprotein A BRE_743 799470 - 797416 - | ATP-dependent helicase, DinG family BRE_744 799704 - 800723 + | histidine phosphokinase/phophatase, putative TERM 589 802990 - 803010 + G 91 -9.9 -4.08216 | opp_overlap 802992 TTTGAAATTTGGTAA TACTTTTCA GTC TGAAAAGTA TTTTAGAAGAAATGA TERM 590 803008 - 802992 - g 70 -8.1 -3.05294 | opp_overlap 802990 TGAAATTTGGTAATA CTTTTCA GTC TGAAAAG TATTTTAGAAGAAAT valS 800723 - 803356 + | valyl-tRNA synthetase TERM 591 803345 - 803361 + T 75 -4.5 -5.11389 | opp_overlap 803316 803345, overlap 803316 TCTAATTTAAAGAAA TCTAGTT ACT AATTAGA TTTTGTTTGTATTAT TERM 592 804104 - 804074 - T 91 -11.4 -3.81602 | opp_overlap 804056 804081, overlap 804059 804077 TAAATTATAAGATAA TAATTTAATCTCTC TAG GAGAGAATAAATTA AAAAATCCATCACTC TERM 593 804101 - 804077 - T 82 -8.7 -4.01089 | opp_overlap 804056 804081, overlap 804059 804074 ATTATAAGATAATAA TTTAATCTCTC TAG GAGAGAATAAA TTAAAAAATCCATCA TERM 594 804249 - 804222 - T 87 -10.8 -3.53091 | opp_overlap 804222, overlap 804209 804228 ATTTTTTCTTTTAAA GAGAAACTAAAT TACG ATTTAGCTTCTC TTTTTTCTTATTCTT TERM 595 804222 - 804249 + T 100 -8.6 -5.70522 | opp_overlap 804209 804222 804228 ATTTTTTCTTTTAAA GAGAAACTAAAT TACG ATTTAGCTTCTC TTTTTTCTTATTCTT groES 804535 - 804257 - | chaperonin groES BRE_748 804673 - 806304 + | ABC transporter, ATP-binding protein TERM 596 807915 - 807889 - g 71 -7.4 -3.72485 | opp_overlap 807892 AAAGATAATTGTAAA TTCTTCTGAAGA GAA TCTTCAAAAGTA TAGAAGTAAATATCT BRE_749 806327 - 808012 + | hypothetical protein BRE_750 808141 - 810390 + | antigen, p83/100 nth 810730 - 811347 + | endonuclease III oppC-2 812206 - 811355 - | oligopeptide ABC transporter, permease protein oppB-2 813153 - 812206 - | oligopeptide ABC transporter, permease protein BRE_756 813629 - 813189 - | hypothetical protein TERM 597 813688 - 813631 - H 86 -11.3 -3.14693 | gap 1, opp_overlap 813631 813670 813678, overlap 813670 TGTATTAGGAACATA TTATATTGTAATTATAT-CTTTAATATA TTA TATTTAAAAGTATATAATTACAATATAA TATGTTCTATAGCAT TERM 598 813631 - 813688 + H 86 -11.3 -3.22886 | gap 1, opp_overlap 813631 813670, overlap 813670 813678 TGTATTAGGAACATA TTATATTGTAATTATAT-CTTTAATATA TTA TATTTAAAAGTATATAATTACAATATAA TATGTTCTATAGCAT TERM 599 813723 - 813670 - H 86 -9.3 -4.2535 | opp_overlap 813631 813670 813678 813719 813721, overlap 813631 ATATTATATTTAAAA GTATATAATTACAATATAATATGTT CTAT AGCATGTTATATTGCAATTGTATAC TTGTAAAGTATGAGT TERM 600 813670 - 813723 + H 100 -13.7 -3.3514 | opp_overlap 813631 813670, overlap 813631 813678 813719 813721 ATATTATATTTAAAA GTATATAATTACAATATAATATGTT CTAT AGCATGTTATATTGCAATTGTATAC TTGTAAAGTATGAGT TERM 601 813678 - 813715 + H 70 -7.3 -3.62644 | opp_overlap 813631 813670, overlap 813631 813670 TTTAAAAGTATATAA TTACAATATAATATGTT CTAT AGCATGTTATATTGCAA TTGTATACTTGTAAA TERM 602 814766 - 814752 - g 76 -7.2 -4.34402 | opp_overlap 814752 GTCTTTAGATCAAAA TTTGCA AGA TGCAAA TGATGTGGAAGTTCA BRE_757 813781 - 815352 + | uncharaterized conserved protein TERM 603 815700 - 815660 - T 79 -8.7 -3.68962 | opp_overlap 815696, overlap 815661 815664 815696 TCCAATAAATTAGAA CCAACTTTTTTAATAAATA GTA TTTTTATTAAAAAAGTTAA AGTTAACTTTGAGTT TERM 604 815699 - 815661 - T 79 -10 -2.80654 | opp_overlap 815696, overlap 815660 815664 815696 CCAATAAATTAGAAC CAACTTTTTTAATAAATA GTA TTTTTATTAAAAAAGTTA AAGTTAACTTTGAGT TERM 605 815696 - 815664 - T 82 -9.5 -3.52809 | overlap 815661 815660 ATAAATTAGAACCAA CTTTTTTAATAAATA GTA TTTTTATTAAAAAAG TTAAAGTTAACTTTG BRE_758 816911 - 815862 - | hypothetical protein BRE_759 818373 - 816871 - | hypothetical protein BRE_760 819115 - 818381 - | putative ABC-2 type transport system permease protein BRE_761 820038 - 819112 - | putative ABC-2 type transport system ATP-binding protein TERM 606 819254 - 819267 + g 73 -5.3 -4.70626 | overlap 819246 819250 GGTTTGAGTTTTAAT GAAAC ATTG GTTTC TTTTTCAAATTCTTC TERM 607 819848 - 819860 + g 70 -4.9 -4.75776 | GGATTTTTTGTTATA TCTTT TCC AAAGA TTTTTACATTGCCTT BRE_762 821019 - 820060 - | ribonuclease Z TERM 608 820581 - 820607 + g 71 -4.6 -4.82111 | opp_overlap 820567 820561 820581, overlap 820561 ATCCAATACAATCTA TTGAATGTTTAA GTT TTATATATTCAA TTCTTTTTCTTTTAT BRE_763 822404 - 821325 - | hypothetical protein clpP-2 822555 - 823145 + | ATP-dependent Clp protease proteolytic component BRE_765 823087 - 823851 + | putative lipoprotein BRE_767 824862 - 823996 - | hypothetical protein BRE_768 825226 - 824897 - | hypothetical protein TERM 609 825281 - 825296 + H 71 -4.8 -4.91285 | GTTTATTTATTATTT CTTTTT TTTT AAAAAG TTTTATTATATTAAT BRE_769 825327 - 826214 + | hypothetical protein rrp-2 827784 - 826429 - | response regulatory protein BRE_771 828937 - 827777 - | sensory transduction histidine kinase, putative TERM 610 828049 - 828060 + g 93 -3 -6.47325 | opp_overlap 828049 TTTCATTTTCATGAA TAGA TATT TCTA TTTTTTTTATTTTTT TERM 611 828499 - 828511 + g 70 -6.3 -4.22749 | opp_overlap 828493, overlap 828496 828505 CAGCTAAAGCTTCAG CTCTT CTA AAGAG TTCTTCTTTATGTTT BRE_772 829980 - 828937 - | DNA polymerase III gamma and tau subunit BRE_773 830492 - 829998 - | colicin V production protein, putative murG 831570 - 830461 - | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) TERM 612 831421 - 831457 + gr 83 -8.3 -4.14193 | AATAAGTTTTTCTTC TATTGAATTTTTTTTTC CAA GCCAAAAAAATTCAATA TTTGTATCATATTCT TERM 613 831622 - 831634 + r 100 -6.3 -5.80951 | AATAATGTATTTTAA TGCAA ATA TTGCA TTTTTTCTTTTAAAT TERM 614 831656 - 831680 + r 78 -4.5 -5.29445 | opp_overlap 831656 CTTTTAAATAACAAA TCATTTATT AGACTAA AATAAATGA TTTTTATTATTGCAA TERM 615 831734 - 831724 - R 79 -4 -5.75945 | opp_overlap 831724 ATTTTTTAAAAAAAA TTCA ATT TGAA TGTCTTTTTTTGTCG pdxK 832494 - 831700 - | pyridoxal kinase TERM 616 832277 - 832294 + g 72 -5.7 -4.58663 | opp_overlap 832277 832275 CCACTATAAAATATA TCAAAAT TTTC ATTTTGA TTTTTCCAGGATAGT gcp 833507 - 832491 - | sialoglycoprotease BRE_777 834399 - 833476 - | hypothetical protein rpoS 835248 - 834445 - | RNA polymerase sigma factor TERM 617 835322 - 835375 + r 91 -8.8 -4.71463 | gap 1, opp_overlap 835329 835334, overlap 835324 835325 ATGCAAAAATCATGC CAA-CTTAGAAAATAATTGATATTT TTATT AAATATTAATTATTTTCTAAGATTA TTTGTTATTTTAATT TERM 618 835324 - 835372 + r 100 -13 -4.42118 | opp_overlap 835329 835334, overlap 835322 835325 GCAAAAATCATGCCA ACTTAGAAAATAATTGATATTT TTATT AAATATTAATTATTTTCTAAGA TTATTTGTTATTTTA TERM 619 835325 - 835371 + r 100 -16.5 -3.22831 | opp_overlap 835329 835334, overlap 835324 835322 CAAAAATCATGCCAA CTTAGAAAATAATTGATATTT TTATT AAATATTAATTATTTTCTAAG ATTATTTGTTATTTT TERM 620 835367 - 835329 - R 72 -9.3 -2.54371 | opp_overlap 835325 835324 835322, overlap 835334 AATCATGCCAACTTA GAAAATAATTGATATTT TTATT AAATATTAATTATTTTC TAAGATTATTTGTTA flgJ 835692 - 835360 - | flagellum-specific muramidase flgI 836675 - 835695 - | flagellar P-ring protein TERM 621 836296 - 836312 + g 77 -9.5 -2.90219 | TTTGTTAAATCTTTT GCATCTA GCA TAGATGC TATGTAAACGTTATG TERM 622 836538 - 836550 + g 75 -3.5 -5.50313 | CGAATTAGCAGGTTG TATTT CAG AAATA TTTTTTAGTTTTGTG BRE_781 837509 - 836871 - | hypothetical protein flgG 838303 - 837506 - | flagellar basal-body rod protein TERM 623 838137 - 838150 + g 76 -8.1 -3.72432 | ACTGTGTCTTCAGTT GCAGG CGTT CCTGC TCTTCTTTGTGTTTG flhO 839193 - 838318 - | flagellar hook-basal body complex protein TERM 624 838534 - 838548 + g 71 -2.8 -5.42862 | overlap 838528 TTCTGTGCTGTACCA TAGGGA ACT TCCTTG TTTTTTTAAAAATCT BRE_784 839395 - 839967 + | hypothetical protein apt 839972 - 840532 + | adenine phosphoribosyltransferase TERM 625 840593 - 840575 - f 72 -6.2 -4.2123 | opp_overlap 840575 840577 840577 TATTCATGTAATAAA TATTAATT ATT AATTAATA TGATTTAAATTTAAA rplU 840661 - 840981 + | 50S ribosomal protein L21 BRE_787 840985 - 841317 + | hypothetical protein rpmA 841304 - 841549 + | 50S ribosomal protein L27 TERM 626 841608 - 841624 + G 72 -6.7 -4.07968 | GTTGATTTGCATCTA TTTAAAG ATT CTTTAAA TTTGATTGTCTCTTC obg 841599 - 842582 + | GTP-binding protein Obg TERM 627 842979 - 842995 + G 75 -5.9 -4.66264 | TGATGATATATATTT GATCATT GGA GATGATC TTTTTGAAACTTTTG nadD 842674 - 843249 + | nicotinate-nucleotide adenylyltransferase BRE_791 843250 - 844434 + | hypothetical protein BRE_792 844400 - 844759 + | hypothetical protein BRE_793 844858 - 845148 + | stage V sporulation protein G ctc 845313 - 845861 + | 50S ribosomal protein L25, general stress protein TERM 628 845885 - 845904 + G 70 -7.8 -3.39842 | overlap 845883 845883 AATTTATTAATAGTT GGCCTAGG TAAT CCTGGGTC TAATTTTTTGCATAC pth 845867 - 846433 + | peptidyl-tRNA hydrolase TERM 629 847210 - 847222 + G 74 -6.3 -4.62904 | GTTTTTTTTAATTTG CCAAA ATA TTTGG TTTTTAGGAGTGTTT BRE_797 846430 - 847749 + | cell cycle protein ftsH 847746 - 849656 + | cell division protein BRE_799 849679 - 851157 + | hypothetical protein BRE_800 851171 - 852811 + | trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain tdk 852817 - 853953 + | thymidine kinase BRE_802 854578 - 853961 - | hypothetical protein tmk 855219 - 854611 - | thymidylate kinase TERM 630 855321 - 855331 + GH 71 -4 -5.10665 | opp_overlap 855321 TTTATAAGGAATAAA GATA CCC TATC TTTTATTTGTTCGAT TERM 631 859217 - 859197 - gH 79 -8.4 -3.7511 | opp_overlap 859200, overlap 859200 CCTGCGAGAACAGAA CAAGAGAT TAAAT ATCTCTTG TCAAATGCAATAATT BRE_804 855294 - 859685 + | hypothetical protein TERM 632 861097 - 861113 + GF 83 -6.6 -4.82901 | GGATATTCTCTCTCA GCAAGA ATTAA TCTTGC TTTTTCTGAACAAAG BRE_805 859633 - 862155 + | outer membrane protein BRE_806 862188 - 862706 + | hypothetical protein BRE_807 863246 - 862737 - | hypothetical protein mutS 863306 - 865894 + | DNA mismatch repair protein TERM 633 866130 - 866149 + F 74 -5.1 -4.76644 | TACTTGGTAAATTTT TTGCAAA TATGAT TTTGCAA TTTTTAATGAATATT TERM 634 866580 - 866610 + F 91 -9.2 -4.61231 | opp_overlap 866583 866586, overlap 866583 866608 ATTGATTATTTTATT TAATAAGGTTCTTT TAA AAAGAGCCTTATTC TTTTTAGGAATGTGA TERM 635 866583 - 866607 + F 93 -10.9 -4.41633 | opp_overlap 866583 866586, overlap 866580 GATTATTTTATTTAA TAAGGTTCTTT TAA AAAGAGCCTTA TTCTTTTTAGGAATG TERM 636 866607 - 866583 - f 71 -8.7 -3.07113 | opp_overlap 866583 866580, overlap 866586 GATTATTTTATTTAA TAAGGTTCTTT TAA AAAGAGCCTTA TTCTTTTTAGGAATG BRE_810 866626 - 867057 + | hypothetical protein nusA 867032 - 868516 + | N-utilization substance protein A infB 868497 - 871136 + | translation initiation factor IF-2 rbfA 871126 - 871515 + | ribosome-binding factor A truB 871525 - 872370 + | tRNA pseudouridine 55 synthase rpsO 872592 - 872933 + | 30S ribosomal protein S15 pnpA 872947 - 875100 + | polyribonucleotide nucleotidyltransferase BRE_817 875110 - 876621 + | hypothetical protein BRE_818 876596 - 877885 + | hypothetical protein TERM 637 878445 - 878435 - gf 76 -4 -5.48303 | overlap 878444 ATAATTTTAAAAAAA GATA TGA TATC AGTAAAGCTGAGTGG BRE_819 877741 - 878949 + | hypothetical protein tgt 878967 - 880094 + | tRNA-guanine transglycosylase TERM 638 880893 - 880903 + G 73 -3.2 -5.4251 | TGTTTATTATCAGCT TCCT GTG GGGA TTTTTTATGTCTCGA TERM 639 881382 - 881418 + G 70 -5.5 -4.52669 | gap 1, overlap 881386 GCATGACATGAATCT TGAACTTAATAAAAGC ATAATA GTTTTTATTAAG-TCA TTTATTTCGATTATT mviN 880087 - 881610 + | virulence factor MviN protein BRE_822 881607 - 883037 + | hypothetical protein dfp 884293 - 883031 - | pantothenate metabolism flavoprotein TERM 640 885636 - 885654 + G 86 -4.6 -5.86465 | AAATATTTTTGCGAT TGGAGCTT TAG AAGTTTCA TTTTTTTCTATTATT panF 884449 - 885870 + | pantothenate permease TERM 641 886640 - 886650 + GF 74 -6.8 -4.32034 | opp_overlap 886638 886635 ACGCATCAAATAAGA GCAC AGT GTGC TTTTAATAATCATGC TERM 642 886747 - 886768 + GF 76 -3.9 -5.45652 | gap 1, opp_overlap 886747, overlap 886750 GATAAACTTTAACCA TTC-TTTCTT TTT AAGAAATGAA TTTTTTGTTGAACCT rluA 885875 - 886849 + | RNA pseudouridylate synthase family protein BRE_826 886818 - 887759 + | hypothetical protein murC 887707 - 889167 + | UDP-N-acetylmuramate--alanine ligase BRE_828 889179 - 890048 + | hypothetical protein BRE_829 890045 - 890584 + | cytidylate kinase BRE_830 890574 - 890804 + | hypothetical protein miaA 890791 - 891693 + | 2-methylthio-N6-isopentyladenosine tRNA modification enzyme TERM 643 891843 - 891799 - T 100 -6.3 -5.71295 | gap 2, opp_overlap 891804 891806 891810, overlap 891803 891806 891810 ACATAAAAAGAAAAA TAAATAATAAAGATGTTAGTT TTGCT AACTAACATCTTTAT-A-TTA TTAGTTTATTCAATG TERM 644 891840 - 891803 - T 100 -9.6 -5.21459 | gap 1, opp_overlap 891804 891806 891810, overlap 891799 891806 891810 AAAAAGAAAAATAAA TAATAAAGATGTTAGTT TTGCT AACTAACATCTTTAT-A TTATTAGTTTATTCA TERM 645 891804 - 891840 + T 95 -11.2 -3.96681 | opp_overlap 891803 891799 891806 891810, overlap 891806 891810 AAAAGAAAAATAAAT AATAAAGATGTTAGTT TTGCT AACTAACATCTTTATA TTATTAGTTTATTCA TERM 646 891838 - 891806 - T 100 -13.8 -4.5815 | opp_overlap 891804 891806 891810, overlap 891803 891799 891810 AAGAAAAATAAATAA TAAAGATGTTAGTT TTGCT AACTAACATCTTTA TATTATTAGTTTATT TERM 647 891806 - 891838 + T 100 -13.8 -3.55605 | opp_overlap 891806 891803 891799 891810, overlap 891804 891810 AAGAAAAATAAATAA TAAAGATGTTAGTT TTGCT AACTAACATCTTTA TATTATTAGTTTATT TERM 648 891834 - 891810 - T 100 -10.2 -4.73617 | opp_overlap 891806 891804 891810, overlap 891806 891803 891799 AAAATAAATAATAAA GATGTTAGTT TTGCT AACTAACATC TTTATATTATTAGTT TERM 649 891810 - 891834 + T 91 -10.2 -4.36774 | opp_overlap 891810 891806 891803 891799, overlap 891806 891804 AAAATAAATAATAAA GATGTTAGTT TTGCT AACTAACATC TTTATATTATTAGTT BRE_832 892205 - 891849 - | hypothetical protein BRE_833 892283 - 892831 + | hypothetical protein BRE_834 893612 - 892803 - | hypothetical protein BRE_835 894117 - 893605 - | hypothetical protein TERM 650 893857 - 893875 + g 70 -6.2 -4.10407 | overlap 893860 GTCTTTGGGTGGTTG TAATTTTT GTA AAAAATTA TTTGCTTCTTCATAT nagE 895599 - 894163 - | Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC hrpA 898175 - 895689 - | ATP-dependent helicase TERM 651 896131 - 896150 + g 72 -6.6 -4.15006 | overlap 896118 TTTTTTAAACCTTTT GAAATTAA TTGT TTAATTTC TTTTAAGCTAAATGT TERM 652 896174 - 896198 + g 100 -10.3 -5.52986 | opp_overlap 896173 TAAATGTTAATTGAT TTTTATATTCA TTT TGAATATAAAA TTTTTTTCCTCCAAT TERM 653 897670 - 897682 + g 72 -3.5 -5.28414 | opp_overlap 897670 GGGGCATTGTTAAAA TATTT TGA AAATA TTTTTGTATTTATTG topA 900716 - 898179 - | DNA topoisomerase I TERM 654 898574 - 898584 + g 76 -4 -5.45652 | CTAGCGTGATATTTT CATA TTC TATG TTTTTTGTTGAAACT TERM 655 901553 - 901563 + G 74 -2.6 -5.67967 | ATGTTAAAAAATATG TAAA CGT TTTA TTTTTTTGTGATAAT sbcD 900793 - 902025 + | exonuclease SbcD TERM 656 902899 - 902910 + G 70 -3 -5.22039 | AAGACTTGCATTTTT TCAT TCTA ATGA TTTTTTGGATTTAAA TERM 657 903932 - 903908 - g 78 -8.1 -4.05004 | opp_overlap 903909 TTATTAGAAGAAGAA TTTGAAAAATT TTT AATTTCTCAAA GAAATATAGAAAATG sbcC 902012 - 904867 + | exonuclease SbcC TERM 658 905967 - 905986 + G 72 -6.6 -4.0896 | TGGAGGAACTACGCC TTTTTATG GTAC CATAAAAA TTTTGAAACAAATTT cutC 905899 - 906486 + | copper homeostasis protein cutC BRE_843 907382 - 906558 - | putative lipoprotein TERM 659 906927 - 906869 - G 73 -9.2 -2.70932 | opp_overlap 906870 906872 906874 906875, overlap 906883 906893 TGTTGTTTGGAATTA GTTTAGTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAATGTAT TTTGTTATGAGTATG TERM 660 906870 - 906926 + g 100 -14.9 -4.79955 | opp_overlap 906869 906883 906893, overlap 906872 906874 906875 GTTGTTTGGAATTAG TTTAGTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAATGTA TTTTGTTATGAGTAT TERM 661 906872 - 906924 + g 100 -17.5 -4.01115 | opp_overlap 906869 906883 906893, overlap 906870 906874 906875 TGTTTGGAATTAGTT TAGTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAATG TATTTTGTTATGAGT TERM 662 906874 - 906922 + g 100 -17.9 -3.58542 | opp_overlap 906869 906883 906893, overlap 906872 906870 906875 TTTGGAATTAGTTTA GTGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCAA TGTATTTTGTTATGA TERM 663 906875 - 906921 + g 100 -21.4 -2.7404 | opp_overlap 906869 906883 906893, overlap 906874 906872 906870 TTGGAATTAGTTTAG TGATATCATTGATCAAAATGAA TAT TTCATGTTGATCAATGATATCA ATGTATTTTGTTATG TERM 664 906913 - 906883 - G 87 -11.4 -2.64735 | opp_overlap 906875 906874 906872 906870, overlap 906869 906893 AGTTTAGTGATATCA TTGATCAAAATGAA TAT TTCATGTTGATCAA TGATATCAATGTATT ileS 910504 - 907370 - | isoleucyl-tRNA synthetase TERM 665 910010 - 909996 - G 75 -7.2 -4.13995 | opp_overlap 909996 909995, overlap 910009 CTTTCATAAATTAAA CCTTTA TTG TAAAGG GTTTTAAATACCCAC TERM 666 910429 - 910452 + g 74 -2.6 -5.59534 | ATTTTTCGAAAATTT TATTATGATT CCAA AATTGTAATA TTTTTTCTTCTAATT clpC 912723 - 910489 - | ATP-dependent Clp protease, subunit C cpsG 914449 - 912740 - | phosphomannomutase TERM 667 914935 - 914970 + G 73 -7.8 -3.78156 | gap 1, opp_overlap 914935 914941, overlap 914938 914941 TAAAGAGAATAAGGA CAGTAACATCTCTTTCT AGA AGAC-GAGATGTTATTG TTGTTGCTACTGTTT TERM 668 915039 - 915057 + G 73 -7.6 -3.75153 | AGTGCTGCTAATGTT TTTTTTGT AGG ACAAAAAA TTTCCATTAAGGAGA uvrB 914565 - 916529 + | excinuclease ABC, subunit B uvrA 916557 - 919397 + | excinuclease ABC, subunit A TERM 669 921949 - 921933 - gT 82 -4.5 -5.62219 | overlap 921935 AAGACACTAAAAAAA CTTTCTT TTC AAAAAAG ACGCTTATTAATTCA BRE_849 919352 - 922810 + | hypothetical protein BRE_850 923451 - 922858 - | hypothetical protein BRE_851 925032 - 923458 - | putative lipoprotein arcA 925218 - 926447 + | arginine deiminase arcB 926411 - 927460 + | ornithine carbamoyltransferase, catabolic BRE_854 927513 - 928928 + | hypothetical protein BRE_856 930214 - 930951 + | putative permease SEQUENCE gi|203288272|ref|NC_011246.1| Borrelia recurrentis A1 plasmid pl124, complete sequence (length 123937) BRE_1001 658 - 5 - | hypothetical protein BRE_1002 646 - 1497 + | hypothetical protein TERM 1 1596 - 1565 - fH 100 -14.8 -4.76123 | opp_overlap 1570 AAATTATGAACAAAA TATAACAGTACAAA TTCT TTTGTACTGTTATA TCAAATAGTATCTAT TERM 2 1570 - 1591 + FH 84 -10.3 -3.50869 | opp_overlap 1565 ATGAACAAAATATAA CAGTACAAA TTCT TTTGTACTG TTATATCAAATAGTA TERM 3 1669 - 1712 + FH 77 -8.6 -3.49182 | opp_overlap 1673, overlap 1665 1696 ATATATTATCCGATA TTAATATCATTAATTAAAAA ATAT TATTTAATTTATGATATTAA TTAATTGTGATATAT TERM 4 2124 - 2101 - g 78 -9.8 -2.69288 | opp_overlap 2099 2105, overlap 2105 ATAACGAAGAACTTA CAAATTTGTT GGTT AACAAATTTG GATTGTCAGCTCAAC BRE_1003 1920 - 2939 + | hypothetical protein BRE_1004 3845 - 3198 - | hypothetical protein TERM 5 3959 - 3939 - R 77 -6.1 -4.8622 | TTTCGTAATTAAAAA GCCCACAAC TTT ACTGTAGGC CTAAATGTAATTCCA BRE_1005 4837 - 4043 - | hypothetical protein TERM 6 4922 - 4967 + r 77 -9.5 -2.96164 | opp_overlap 4925 4928 4933 4947, overlap 4912 4921 4925 4928 4933 4959 ATATCTATTATATTA TAATAATAAAACTATATTACA ATAA TATAATATAGTTTTATTATAA ATTTATACATAATAT TERM 7 4925 - 4964 + r 83 -11.2 -2.71325 | opp_overlap 4925 4928 4933 4947, overlap 4912 4922 4921 4928 4933 4959 TCTATTATATTATAA TAATAAAACTATATTACA ATAA TATAATATAGTTTTATTA TAAATTTATACATAA TERM 8 4964 - 4925 - R 100 -13.4 -3.484 | opp_overlap 4912 4925 4922 4921 4928 4933 4959, overlap 4928 4933 4947 TCTATTATATTATAA TAATAAAACTATATTACA ATAA TATAATATAGTTTTATTA TAAATTTATACATAA TERM 9 4928 - 4961 + r 77 -8.5 -3.50047 | opp_overlap 4925 4928 4933 4947, overlap 4912 4925 4922 4921 4933 4959 ATTATATTATAATAA TAAAACTATATTACA ATAA TATAATATAGTTTTA TTATAAATTTATACA TERM 10 4961 - 4928 - R 93 -10.7 -3.87505 | opp_overlap 4912 4928 4925 4922 4921 4933 4959, overlap 4925 4933 4947 ATTATATTATAATAA TAAAACTATATTACA ATAA TATAATATAGTTTTA TTATAAATTTATACA TERM 11 4956 - 4933 - R 82 -6.2 -4.9645 | opp_overlap 4912 4933 4928 4925 4922 4921, overlap 4928 4925 4947 ATTATAATAATAAAA CTATATTACA ATAA TATAATATAG TTTTATTATAAATTT TERM 12 5037 - 5073 + r 100 -8.3 -4.95896 | opp_overlap 5043 AACTAAAAGATCACT TTAATAGTAAACCTACA TAT TATAAGTTTACTATTAA TTTTTATCAATTTAT BRE_1006 6114 - 5146 - | hypothetical protein TERM 13 6307 - 6289 - R 76 -3.8 -5.49234 | ATATCTAATAAAAAA GCCTGC CTTAAGT GCAGAC TAATTAATAAATTAA BRE_1007 7409 - 6357 - | hypothetical protein TERM 14 7682 - 7657 - R 72 -6.3 -4.29034 | overlap 7654 7673 AAATAAAAAACATAA TAAGTCTACAT TTAA ATGCAAACTTA TTTACAAGTTATTTA BRE_1008 8787 - 7750 - | hypothetical protein TERM 15 9050 - 9025 - R 100 -11.2 -5.19275 | ATTCATAAAATAAAA CTAAGCCTGC ACTTAA GCAGGCTCAG AGAATATTTATACGT BRE_1009 10057 - 9128 - | hypothetical protein BRE_1011 12163 - 11357 - | hypothetical protein TERM 16 13978 - 13958 - R 88 -6.1 -5.39681 | overlap 13962 ATAAGGAAATAAAAA CTAAGGCAG GAA CTGCCTGAA GTAAAGCTTGTGGAC TERM 17 13974 - 13962 - R 83 -9.1 -3.98991 | overlap 13958 GGAAATAAAAACTAA GGCAG GAA CTGCC TGAAGTAAAGCTTGT TERM 18 14178 - 14145 - R 100 -10.5 -4.84311 | CTCTATATAATAAAA TTGATGAAGTCCAAA TTTA TATGAACTTCATCAA CGATTAATTAATTAA BRE_1014 14998 - 14225 - | putative lipoprotein BRE_1015 16444 - 15560 - | hypothetical protein TERM 19 18478 - 18458 - g 72 -4.7 -4.97461 | AACAAATACCAAAAA CACCAGAAG AAG CTTATGATG CATTAATTGAAAACT TERM 20 18698 - 18685 - g 76 -4.5 -5.29385 | AATCCAACTAAAAAA CCTGA TATT CCAGG GCTTGATGTTGCGTC BRE_1017 18280 - 19107 + | hypothetical protein TERM 21 19200 - 19223 + F 84 -6 -5.16237 | opp_overlap 19203 19204, overlap 19204 AACTTCATAAAAATA AAAGCCCACA AAGG TGTGGGTTTC TTTTTTCCTAAAATT TERM 22 19220 - 19203 - f 85 -5.5 -5.35224 | opp_overlap 19200 19204, overlap 19204 TTCATAAAAATAAAA GCCCACA AAGG TGTGGGT TTCTTTTTTCCTAAA TERM 23 19219 - 19204 - f 81 -9 -3.79508 | opp_overlap 19200 19204, overlap 19203 TCATAAAAATAAAAG CCCACA AAGG TGTGGG TTTCTTTTTTCCTAA TERM 24 19204 - 19219 + F 100 -9 -5.0917 | opp_overlap 19204 19203, overlap 19200 TCATAAAAATAAAAG CCCACA AAGG TGTGGG TTTCTTTTTTCCTAA TERM 25 19300 - 19332 + F 72 -8.1 -3.3341 | opp_overlap 19300 19307, overlap 19304 19307 19311 19324 19326 TAAAAAATCTAACAT TAAAAAATAAATAAA TTG TTTATTTATTATTTA TTAATAATGTTTTCT TERM 26 19307 - 19325 + F 72 -6.2 -4.25016 | opp_overlap 19300 19307, overlap 19304 19300 19311 19324 TCTAACATTAAAAAA TAAATAAA TTG TTTATTTA TTATTTATTAATAAT TERM 27 19325 - 19307 - f 93 -6.2 -5.27779 | opp_overlap 19307 19304 19300 19311 19324, overlap 19300 TCTAACATTAAAAAA TAAATAAA TTG TTTATTTA TTATTTATTAATAAT TERM 28 19458 - 19444 - f 77 -5.8 -4.82333 | ACAAGAATTTAAAAA CATTAA TTA TTAATG ATACAAATTATTACA TERM 29 19573 - 19585 + G 76 -4.1 -5.40625 | ATATAAAACAATATT TGTGC TAA GTACA TTTTTTATATGCTGT TERM 30 20082 - 20068 - g 78 -5.8 -4.93316 | overlap 20061 TAAGAACACTAAAAA TTTAGA AAG TCTAAA TGAAATTGCAAAAAT BRE_1018 19547 - 20353 + | hypothetical protein TERM 31 20502 - 20461 - f 74 -5.3 -4.73864 | opp_overlap 20469, overlap 20469 GTAACTAATATAAAA TTATTAAACTAAGTCCATA AATA TGTGGACTTAGTTTGCCAA CATCGTCTAACTAAC TERM 32 20469 - 20494 + F 89 -11.3 -3.54741 | opp_overlap 20469 20461 TATAAAATTATTAAA CTAAGTCCATA AATA TGTGGACTTAG TTTGCCAACATCGTC TERM 33 20494 - 20469 - f 83 -9.1 -3.94664 | opp_overlap 20469, overlap 20461 TATAAAATTATTAAA CTAAGTCCATA AATA TGTGGACTTAG TTTGCCAACATCGTC TERM 34 20897 - 20879 - g 88 -7.5 -4.89852 | CCACACTCATAAAAA GCCTTAA TAAAT TTAAGGC ACTATATAATTGCAT BRE_1019 20683 - 21483 + | hypothetical protein TERM 35 22590 - 22562 - T 100 -12.7 -4.81249 | TTGCAAACTCAAAAA TCACTTTAAAACA TTA TGTTCTAAAGTGA TAGATCAAGTGCAAG TERM 36 22780 - 22763 - T 100 -9.9 -5.93252 | opp_overlap 22763 TCGAAAAATAAAAAA GTCCACA TATT TGTGGAC TTAACTAATAACTAA TERM 37 22763 - 22780 + T 79 -9.9 -3.10164 | opp_overlap 22763 TCGAAAAATAAAAAA GTCCACA TATT TGTGGAC TTAACTAATAACTAA BRE_1021 23594 - 22854 - | putative lipoprotein TERM 38 23609 - 23622 + r 71 -2.5 -5.61913 | TTAAATATACTCCTA TATAT ATAA ATATA TTTTTTATGTTTATT TERM 39 23676 - 23686 + r 71 -2.6 -5.57729 | opp_overlap 23676 ACCACAACAATAATA TAAA TTG TTTA TTTTTTATATTATTT BRE_1023 25875 - 25000 - | hypothetical protein TERM 40 25100 - 25088 - G 72 -6.3 -4.32436 | opp_overlap 25088 25086 ACAGGAGCATCAAAA GGATT AAA AATCC TATTATAAATATCAC BRE_1024 26890 - 26093 - | putative lipoprotein BRE_1025 27814 - 27026 - | putative lipoprotein TERM 41 27630 - 27642 + g 72 -6.3 -4.43272 | AATGACTCATAATTG GAATG AAA CATTC TTTTAAATTTTAAGT BRE_1026 28618 - 27842 - | putative lipoprotein BRE_1027 29413 - 28637 - | putative lipoprotein TERM 42 30193 - 30161 - R 91 -12.3 -3.29861 | opp_overlap 30161 30164, overlap 30141 30164 30167 AACTTAATAAGTTAA TAATAACTACCTCTA AAT TAGAAGTAGCTATTA TTTATATAGAATATT TERM 43 30161 - 30193 + r 80 -7.9 -4.06148 | opp_overlap 30141 30161 30164 30167, overlap 30164 AACTTAATAAGTTAA TAATAACTACCTCTA AAT TAGAAGTAGCTATTA TTTATATAGAATATT TERM 44 30190 - 30164 - R 83 -9.6 -3.77953 | opp_overlap 30161 30164, overlap 30161 30167 TTAATAAGTTAATAA TAACTACCTCTA AAT TAGAAGTAGCTA TTATTTATATAGAAT TERM 45 30187 - 30167 - R 83 -9.1 -4.00097 | opp_overlap 30164 30161, overlap 30164 30161 ATAAGTTAATAATAA CTACCTCTA AAT TAGAAGTAG CTATTATTTATATAG TERM 46 30805 - 30825 + r 93 -6.2 -5.43866 | CTCTAGATTCAAATG CAGCATAA ACTTC TTGTGCTG TTTTTTTAGGAATTA TERM 47 31464 - 31436 - R 90 -6.1 -5.52909 | opp_overlap 31430 TAATATTTAAAAAAA TCTTGAGATTCCA ATT CAAAACCTCAAGA TTTTTCTTTAATTTA BRE_1029 32364 - 31477 - | putative lipoprotein TERM 48 32530 - 32518 - R 77 -4.9 -5.18297 | GAATAACAAATAAAA TGTAT GAT ATACA CGATATTCATTACAT BRE_1030 33336 - 32596 - | hypothetical protein TERM 49 33541 - 33570 + r 100 -16.7 -4.13995 | opp_overlap 33541 AATAACAAACAAAAA CATTAAATGGGCT TATA AGCCCATTTAATG TTTAATTTATAACCA TERM 50 33570 - 33541 - R 100 -16.7 -5.52807 | opp_overlap 33541 AATAACAAACAAAAA CATTAAATGGGCT TATA AGCCCATTTAATG TTTAATTTATAACCA BRE_1031 34633 - 33572 - | hypothetical protein TERM 51 33950 - 33932 - G 71 -7.6 -3.63341 | opp_overlap 33924, overlap 33935 AATATTTGTTAACAA TAACTTAT CAA ATAAGTTA CCCAACCTTGCAATA BRE_1032 35813 - 34971 - | hypothetical protein TERM 52 35100 - 35090 - G 71 -2.6 -5.49809 | opp_overlap 35090 GAAATTTTAAAAAAA TATT CAC AATA CTATTATTAAAAACA TERM 53 36255 - 36236 - R 73 -2.2 -5.72254 | gap 1, overlap 36238 TTAAATAATAAAAAA GAGATGCAA TTC TTACATC-C ACCTTATCTATATTT TERM 54 36254 - 36238 - R 71 -5.9 -4.47161 | overlap 36236 AAATAATAAAAAAGA GATGCAA TTC TTACATC CACCTTATCTATATT BRE_1034 37466 - 36870 - | hypothetical protein BRE_1035 38240 - 37632 - | hypothetical protein BRE_1036 38770 - 38426 - | hypothetical protein BRE_1037 39189 - 38812 - | putative lipoprotein TERM 55 39395 - 39415 + r 88 -6.1 -5.39681 | overlap 39399 GTCCACAAGCTTTAC TTCAGGCAG TTC CTGCCTTAG TTTTTATTTCCTTAT TERM 56 39399 - 39411 + r 83 -9.1 -3.98991 | overlap 39395 ACAAGCTTTACTTCA GGCAG TTC CTGCC TTAGTTTTTATTTCC BRE_1038 40529 - 39396 - | transposase IS605 OrfB BRE_1039 40563 - 40982 + | transposase IS200-like protein TERM 57 40990 - 41027 + T 82 -7.9 -4.37348 | gap 1, opp_overlap 40983 40991, overlap 40991 TTTATTAACAAATTC ATCTCCACCTA-AATCTC ATA GAAATTATAGGTGGAGAA TTCTTTGTTATTATT TERM 58 40991 - 41026 + T 86 -11.4 -3.19969 | gap 1, opp_overlap 40983 40991, overlap 40990 TTATTAACAAATTCA TCTCCACCTA-AATCTC ATA GAAATTATAGGTGGAGA ATTCTTTGTTATTAT TERM 59 41026 - 40991 - T 100 -13.6 -2.77283 | gap 1, opp_overlap 40991 40990, overlap 40983 TTATTAACAAATTCA TCTCCACCTA-AATCTC ATA GAAATTATAGGTGGAGA ATTCTTTGTTATTAT BRE_1040 42039 - 41143 - | hypothetical protein TERM 60 42141 - 42172 + r 75 -7.6 -4.18018 | opp_overlap 42140 42138 42143, overlap 42123 42143 TATATTTAAAAATAT GATTACTTAAAAAT ATTT ATTTTTAAGTAATA TTTTAAATGCAAAAA TERM 61 42170 - 42143 - R 79 -10.2 -3.02902 | opp_overlap 42141 42143, overlap 42140 42138 TATTTAAAAATATGA TTACTTAAAAAT ATTT ATTTTTAAGTAA TATTTTAAATGCAAA TERM 62 42143 - 42170 + r 85 -10.2 -3.69216 | opp_overlap 42143 42140 42138, overlap 42141 TATTTAAAAATATGA TTACTTAAAAAT ATTT ATTTTTAAGTAA TATTTTAAATGCAAA TERM 63 43126 - 43081 - R 74 -5.1 -4.80455 | gap 1, opp_overlap 43088 43090 43094 43098, overlap 43087 43088 43090 43098 CAGTTAAATATAAAA TACAAATGAGAAATAAAGACTT AAC AAGTCTCTATTTCT-ATCTATT TCAATTAATACTTAA TERM 64 43120 - 43087 - R 85 -8.5 -4.55004 | gap 1, opp_overlap 43088 43090 43094 43098, overlap 43081 43088 43090 43098 AATATAAAATACAAA TGAGAAATAAAGACTT AAC AAGTCTCTATTTCT-A TCTATTTCAATTAAT TERM 65 43120 - 43088 - R 82 -10.1 -3.30562 | opp_overlap 43088 43090 43094 43098, overlap 43087 43081 43090 43098 ATATAAAATACAAAT GAGAAATAAAGACTT AAC AAGTCTCTATTTCTA TCTATTTCAATTAAT TERM 66 43088 - 43120 + r 72 -7.9 -3.30507 | opp_overlap 43087 43088 43081 43090 43098, overlap 43090 43094 43098 ATATAAAATACAAAT GAGAAATAAAGACTT AAC AAGTCTCTATTTCTA TCTATTTCAATTAAT TERM 67 43118 - 43090 - R 100 -12.7 -3.19413 | opp_overlap 43088 43090 43094 43098, overlap 43087 43088 43081 43098 ATAAAATACAAATGA GAAATAAAGACTT AAC AAGTCTCTATTTC TATCTATTTCAATTA TERM 68 43090 - 43118 + r 85 -10.5 -3.211 | opp_overlap 43090 43087 43088 43081 43098, overlap 43088 43094 43098 ATAAAATACAAATGA GAAATAAAGACTT AAC AAGTCTCTATTTC TATCTATTTCAATTA TERM 69 43110 - 43098 - R 76 -6.3 -4.65032 | opp_overlap 43094 43090 43088 43098, overlap 43090 43087 43088 43081 CAAATGAGAAATAAA GACTT AAC AAGTC TCTATTTCTATCTAT BRE_1041 43932 - 43168 - | hypothetical protein TERM 70 43981 - 43967 - R 77 -2.2 -5.88061 | AAAAAATTAAAAAAA TCAATA TTC TATTAA CCAAACTTTTGAAAT BRE_1042 44840 - 44121 - | putative lipoprotein TERM 71 44818 - 44801 - G 72 -6.3 -4.33153 | CCGAATAGCAAGAAA GTATGCT AAAA AGCACAC ACAAAATAAAAACTA TERM 72 44988 - 44964 - R 74 -7.2 -3.94877 | opp_overlap 44964 44969, overlap 44969 ACCTTTTAATAACAA TTAAAGGCCC ATAAA GGTCCTTTAA TCTATAAATTTTTTA BRE_1043 45787 - 44990 - | hypothetical protein BRE_1044 46795 - 46106 - | hypothetical protein TERM 73 46956 - 46932 - R 75 -4.5 -5.2112 | opp_overlap 46939, overlap 46921 AATATTATTAAAAAA TAAAATATAAT GCT ATTATTTTTTA ACATATTAATAAAAC TERM 74 47076 - 47066 - R 71 -2.6 -5.48163 | overlap 47058 AAATAAATTAAAAAA TTTT AAA AAAA ATAAACAATTGTTTA TERM 75 47091 - 47078 - R 83 -3.9 -5.82388 | overlap 47082 47085 AAATTTTAAAAAAAA TAAAC AATT GTTTA TATAAATTTATATAA TERM 76 47113 - 47082 - R 95 -7.6 -5.33985 | overlap 47078 47085 TTTAAAAAAAATAAA CAATTGTTTATATA AATT TATATAAACAATCA ATAGAATTATCAAAA TERM 77 47110 - 47085 - R 91 -9.3 -4.68355 | overlap 47078 47082 AAAAAAAATAAACAA TTGTTTATATA AATT TATATAAACAA TCAATAGAATTATCA nrdF 48097 - 47132 - | ribonucleoside-diphosphate reductase, beta subunit TERM 78 47884 - 47898 + g 73 -8.6 -2.97188 | opp_overlap 47884, overlap 47886 TACGTGGCATACCAA CAGAAC CTT GTTCTG TGTCTAATAATGTAA TERM 79 47898 - 47884 - G 74 -8.6 -3.2614 | opp_overlap 47884 47886 TACGTGGCATACCAA CAGAAC CTT GTTCTG TGTCTAATAATGTAA nrdE 50265 - 48142 - | ribonucleoside-diphosphate reductase, alpha subunit nrdI 50554 - 50189 - | ribonucleoprotein BRE_1048 51448 - 50630 - | thymidylate synthase protein BRE_1049 51874 - 52710 + | p23-like cell envelope protein TERM 80 53306 - 53290 - g 70 -3.1 -5.252 | opp_overlap 53293, overlap 53294 TACTTGGATAAAAAA CAATTTT CAA AAAATTA TTGAAACAGATACAC BRE_1050 53012 - 53842 + | p23-like cell envelope protein TERM 81 53843 - 53865 + T 100 -12.2 -4.2349 | opp_overlap 53843, overlap 53836 GCACCTGTTGATTAA TCTGATCATT CCT AATGATCAGA TTTTAAATATCAACA TERM 82 53865 - 53843 - T 91 -12.2 -3.14564 | opp_overlap 53836 53843 GCACCTGTTGATTAA TCTGATCATT CCT AATGATCAGA TTTTAAATATCAACA BRE_1051 54559 - 54062 - | hypothetical protein BRE_1052 55351 - 54734 - | hypothetical protein BRE_1054 57434 - 56442 - | outer membrane protein TERM 83 57470 - 57448 - R 83 -8 -4.41616 | opp_overlap 57448 ATTCTCCTAAATAAA TATAATTATA TTA TATAATTATA TTTTAACCTTTATAA TERM 84 57448 - 57470 + r 82 -8 -4.26189 | opp_overlap 57448 ATTCTCCTAAATAAA TATAATTATA TTA TATAATTATA TTTTAACCTTTATAA BRE_1055 58039 - 57473 - | hypothetical protein BRE_1056 59530 - 58064 - | hypothetical protein BRE_1057 59762 - 59544 - | hypothetical protein BRE_1058 60209 - 59787 - | hypothetical protein BRE_1059 60635 - 60213 - | hypothetical protein BRE_1060 61708 - 60632 - | hypothetical protein TERM 85 61723 - 61745 + r 84 -5.8 -5.10526 | opp_overlap 61729, overlap 61724 TATTATCTCCTATTT TTAAATTTAA CTT TTAAGTTTAA TTTATTTTTTAATCT TERM 86 61724 - 61749 + r 80 -4.9 -5.28755 | opp_overlap 61729, overlap 61723 ATTATCTCCTATTTT TAAATTTAACT TTTA AGTTTAATTTA TTTTTTAATCTATTT BRE_1061 62302 - 61754 - | hypothetical protein TERM 87 61908 - 61922 + g 86 -7.2 -5.07652 | opp_overlap 61898 AAAGATAAATCATAT TCCTTT TCT AAAGGA TTTTGTTTTAAAAAC TERM 88 62217 - 62237 + g 71 -8.5 -2.85297 | opp_overlap 62209 TTGATAATCTTCACT TTTAAAGAA TGT TTCTTTAAA TAATCTTTAAACTCA BRE_1062 62709 - 62335 - | hypothetical protein BRE_1063 63110 - 62706 - | hypothetical protein BRE_1064 64024 - 63101 - | hypothetical protein TERM 89 64092 - 64076 - R 73 -6.7 -4.1196 | opp_overlap 64057 64076 AATTTATTTTTAAAA TTGAATT ATT AATTCAA TTACTATTTAAATTA TERM 90 66576 - 66521 - R 73 -6.8 -4.1043 | gap 1, opp_overlap 66528, overlap 66525 66528 66533 TTTAAATATCATAAA TTAATT-ATATCATTGATATTTAACTT TGT AAATTAAATATCAAAAATATCAATCAA ATTTACAAATAATTA TERM 91 66568 - 66528 - R 71 -8.7 -2.92669 | opp_overlap 66528, overlap 66525 66521 66533 ATCATAAATTAATTA TATCATTGATATTTAACTT TGT AAATTAAATATCAAAAATA TCAATCAAATTTACA TERM 92 66563 - 66533 - R 82 -10.8 -2.72052 | opp_overlap 66528, overlap 66528 66525 66521 AAATTAATTATATCA TTGATATTTAACTT TGT AAATTAAATATCAA AAATATCAATCAAAT TERM 93 66712 - 66681 - R 100 -9.6 -4.7908 | overlap 66682 AAAAATATAAATAAA TTTACCTTAAGACC CAAA AGTCTTAAGGTAAG TAACTAAATTTATAA TERM 94 66711 - 66682 - R 100 -13.1 -3.43788 | overlap 66681 AAAATATAAATAAAT TTACCTTAAGACC CAAA AGTCTTAAGGTAA GTAACTAAATTTATA BRE_1068 68053 - 66773 - | putative lipoprotein TERM 95 67291 - 67303 + g 80 -6.3 -4.84017 | opp_overlap 67288 67284 67291 CTATAAGAGAAATAA CATCT TTA AGATG TTTTTCTAAAAAATT TERM 96 67303 - 67291 - G 70 -6.3 -4.25053 | opp_overlap 67291, overlap 67288 67284 CTATAAGAGAAATAA CATCT TTA AGATG TTTTTCTAAAAAATT BRE_1069 68307 - 69386 + | putative Viral A-type inclusion protein repeat TERM 97 69485 - 69457 - f 93 -9 -4.86613 | opp_overlap 69460 CAAAATTAAAAGAAA CAATCTCCATCA ATATA CGATGGAGATTA ATATTAATTCATATT TERM 98 69460 - 69482 + F 72 -7.8 -3.42548 | opp_overlap 69457 AATTAAAAGAAACAA TCTCCATC AATATAC GATGGAGA TTAATATTAATTCAT TERM 99 69979 - 69967 - g 71 -2.7 -5.46629 | overlap 69956 AATATTGTAAAAAAA TTTGA CAA CCAAA ATATTGCAAACAAAA BRE_1070 69709 - 70311 + | putative lipoprotein TERM 100 70980 - 70995 + F 100 -4.8 -6.23545 | opp_overlap 70980, overlap 70969 ATATTATTTTAAAAA TATCAA TTTT TTGATA TTTTTTTTATTTAAA TERM 101 72130 - 72166 + F 100 -7 -6.23545 | gap 1, opp_overlap 72130, overlap 72125 TGTAAAATTTTTAAA CTTTAATTTTAA-CTAT GATT GTAGATTAAAATTAAAG TTTTTTTTATTTAAC BRE_1072 72217 - 74085 + | Viral A-type inclusion protein repeat TERM 102 74200 - 74162 - f 85 -8.4 -4.34267 | opp_overlap 74196, overlap 74168 TGACACAATGTAAAA TTAAAATCCCTACCTGAT TAT ACAAAATAGGGATTTTAA TTATCTTATCTAATT TERM 103 76099 - 76081 - g 73 -3.2 -5.51165 | AAAACTTTAAAAAAA TCAATTTT CAC AAATTTGA AGAAATAAAAGCTCA BRE_1073 74289 - 76148 + | putative lipoprotein BRE_1074 76293 - 77726 + | putative lipoprotein TERM 104 79100 - 79061 - T 75 -4.4 -5.16038 | ATAGAATAAATAAAA TAAGAACCTACCTAATAT GCAA ACCTCAGGCAAGTCCTTA TTTATATTACAGGGT BRE_1075 81447 - 79150 - | expressed protein TERM 105 79862 - 79830 - G 70 -7.7 -3.46509 | overlap 79824 79832 79833 79835 CGTGAATAACACCAA TAGCAGCTTCTGCAC CTT GTACAGCAGCTGTCA CTAAAGTATCTGCTT TERM 106 79860 - 79832 - G 71 -8.1 -3.29958 | overlap 79830 79824 79833 79835 TGAATAACACCAATA GCAGCTTCTGCAC CTT GTACAGCAGCTGT CACTAAAGTATCTGC TERM 107 79859 - 79833 - G 87 -11.6 -2.57252 | overlap 79832 79830 79824 79835 GAATAACACCAATAG CAGCTTCTGCAC CTT GTACAGCAGCTG TCACTAAAGTATCTG TERM 108 79857 - 79835 - G 71 -8.4 -2.81181 | overlap 79833 79832 79830 79824 ATAACACCAATAGCA GCTTCTGCAC CTT GTACAGCAGC TGTCACTAAAGTATC TERM 109 81542 - 81494 - R 100 -15.8 -4.47163 | opp_overlap 81499, overlap 81499 AAGGAAAATAAATAA TAAAAGGGTTATCTTTAAAATT TCTAT AATCTTAAAGATAACCCTTTAA ATGACAAATATCAAT TERM 110 81537 - 81499 - R 100 -15.7 -5.10765 | opp_overlap 81499, overlap 81494 AAATAAATAATAAAA GGGTTATCTTTAAAATT TCTAT AATCTTAAAGATAACCC TTTAAATGACAAATA TERM 111 81499 - 81537 + r 100 -13.5 -3.6502 | opp_overlap 81499 81494 AAATAAATAATAAAA GGGTTATCTTTAAAATT TCTAT AATCTTAAAGATAACCC TTTAAATGACAAATA BRE_1076 82623 - 81637 - | hypothetical protein BRE_1077 83449 - 82817 - | hypothetical protein BRE_1078 84148 - 83720 - | hypothetical protein TERM 112 83922 - 83905 - G 70 -4.9 -4.72007 | opp_overlap 83905 83914 TGCCATTAAAAGAAA CCCTTAA AAGA TTAAGAG CTTTTTTAGTCTTAA BRE_1079 84384 - 85196 + | p23-like cell envelope protein TERM 113 85259 - 85283 + F 78 -10.3 -2.69987 | opp_overlap 85258 85266, overlap 85258 85256 85253 TAAATAATATTGAAC GTATAAATAAT AAT ATTATTTATAC CTATTAATTTTTATC TERM 114 85613 - 85598 - g 70 -4.8 -4.74453 | GAATACATTGAAAAA TTTGAA GACC TTCAAA GTAGAACAACAAATC TERM 115 86026 - 86047 + G 73 -8.1 -3.35798 | opp_overlap 86026 86023 86021 86042 AAAATCACAAGAGAG TGGATATGT TAAT GCATATCCA TTCTGGATAGCAAAT BRE_1080 85460 - 86260 + | p23-like cell envelope protein TERM 116 86342 - 86297 - f 100 -12.1 -4.7078 | opp_overlap 86297 86300 TTAATTATTTAAAAA CAAGATTCTACACTACAGCTT AAGC AAACAATAGTGTAGGATCTTG TATCATAATAACGTT TERM 117 86297 - 86342 + F 79 -9.9 -2.83012 | opp_overlap 86297, overlap 86300 TTAATTATTTAAAAA CAAGATTCTACACTACAGCTT AAGC AAACAATAGTGTAGGATCTTG TATCATAATAACGTT TERM 118 86505 - 86494 - f 75 -3 -5.50774 | opp_overlap 86494 CACAACAAACAAAAA TCTT AAAT AAGA TATATGCACCTACCT TERM 119 87031 - 87015 - g 76 -6.7 -4.56775 | opp_overlap 87014 AGCTCTTGCTAAAAA CTTTAAT GAT ATTAAAG ATGCATTGCCTAAAG BRE_1081 86782 - 87312 + | hypothetical protein TERM 120 87400 - 87427 + T 95 -10 -4.67651 | opp_overlap 87401, overlap 87401 TCAGATAGATTAATA ACAGATGTACTA CCAG TAGTACATCTGA TTTATTTTAAACTCT TERM 121 87401 - 87426 + T 100 -13.5 -3.39506 | opp_overlap 87401, overlap 87400 CAGATAGATTAATAA CAGATGTACTA CCAG TAGTACATCTG ATTTATTTTAAACTC TERM 122 87426 - 87401 - T 100 -13.5 -3.81089 | opp_overlap 87401 87400 CAGATAGATTAATAA CAGATGTACTA CCAG TAGTACATCTG ATTTATTTTAAACTC TERM 123 87597 - 87628 + T 81 -7.5 -4.60746 | opp_overlap 87597 87602, overlap 87602 AATTACTTTAAATAA TAAAAGCTAAAGT CATTGT ACTCTAGCTTTTA TTTTAATGTTTTTAC TERM 124 87628 - 87597 - T 86 -9.7 -3.95036 | opp_overlap 87597 87602, overlap 87602 AATTACTTTAAATAA TAAAAGCTAAAGT CATTGT ACTCTAGCTTTTA TTTTAATGTTTTTAC TERM 125 87623 - 87602 - T 77 -5.2 -5.00196 | opp_overlap 87597 87602, overlap 87597 CTTTAAATAATAAAA GCTAAAGT CATTGT ACTCTAGC TTTTATTTTAATGTT bsr 88928 - 87690 - | bsr protein TERM 126 87770 - 87760 - G 72 -6.8 -4.15114 | AAGAGCAAATAACAA GCAC TAA GTGC ATCAAGAGCATCATC TERM 127 88800 - 88790 - G 70 -5.4 -4.5774 | TATTAATAATTAAAA GCTT AAT AAGC AAATATGATGCCAAG BRE_1083 89597 - 89046 - | hypothetical protein TERM 128 89722 - 89697 - R 81 -7.7 -4.71401 | opp_overlap 89701 89703, overlap 89699 AATAAAATCACAAAA TAGATATTGGA TTAG TCCAATATCTT AAGAAAAGGAGAAAA TERM 129 89720 - 89699 - R 88 -10.3 -3.9392 | opp_overlap 89701 89703, overlap 89697 TAAAATCACAAAATA GATATTGGA TTAG TCCAATATC TTAAGAAAAGGAGAA TERM 130 89952 - 89914 - R 89 -11.2 -3.57161 | AAACATTAATCACAA TCCTTTCACGTCAAGA ATTTTTG TCTTGACGTGAGAGAA CTCACAAAAATATTC TERM 131 90037 - 89985 - R 100 -16.8 -3.39429 | gap 1, opp_overlap 89990, overlap 89990 AACAACTCTTAAATA TTAAAGGGTTTATTGGAA-ACTCTG GCCT CAAAGTACCCCAATAAACCCTTTAA GGTAACAGGTCCTTA TERM 132 90032 - 89990 - R 100 -12.3 -4.00532 | gap 1, opp_overlap 89990, overlap 89985 CTCTTAAATATTAAA GGGTTTATTGGAA-ACTCTG GCCT CAAAGTACCCCAATAAACCC TTTAAGGTAACAGGT TERM 133 90117 - 90145 + r 72 -3.3 -5.40474 | opp_overlap 90137 ACAATTTAAAACATT TTGCAAACATTTT CTT AAAATTTTTTCAA TTTTTTTAAAAAAAT TERM 134 90168 - 90137 - R 100 -12 -4.09511 | opp_overlap 90117 AACATTTTCTTAAAA TTTTTTCAATTTTT TTAA AAAAATTGAAAAAA AAACAAAAAAACTCT pf49 90966 - 90415 - | PF49 plasmid partition protein TERM 135 90979 - 91003 + r 91 -12.3 -3.47345 | overlap 90980 CAACCCTCCTTTGCT TTTACGTACAC TAA GTGTACGTAAG TTATAATGTAAGCTT TERM 136 90980 - 91002 + r 100 -13.6 -2.67925 | overlap 90979 AACCCTCCTTTGCTT TTACGTACAC TAA GTGTACGTAA GTTATAATGTAAGCT pf32 91772 - 91017 - | PF32 plasmid partition protein ppap1 92311 - 91748 - | plasmid partitioning associated protein-1 ppap2 93448 - 92339 - | plasmid partioning associated protein 2 TERM 137 93542 - 93555 + r 74 -2.5 -5.63504 | opp_overlap 93537 93542 TAGCAAATATGAAAA TAAAT TAAT ATTTA TTTTTTTATAAGATT TERM 138 93764 - 93751 - R 76 -3.9 -5.47821 | opp_overlap 93758 AGTCATGTAAAAAAA TTTCA TGGA TGAAA TCATCAATTTTGTGT TERM 139 93894 - 93868 - R 83 -9.6 -3.78837 | opp_overlap 93875, overlap 93874 ATATAATTAATATAA TTTAAAGTCCCA ATG TGGGATTTTAAA AAAAGAGTAAGAAGG TERM 140 93875 - 93887 + r 75 -7.7 -4.07687 | opp_overlap 93874 93868 TAATATAATTTAAAG TCCCA ATG TGGGA TTTTAAAAAAAGAGT BRE_1088 94295 - 93930 - | putative lipoprotein BRE_1089 94675 - 94292 - | hypothetical protein BRE_1090 96126 - 95014 - | hypothetical protein BRE_1092 97610 - 96750 - | hypothetical protein TERM 141 97161 - 97182 + g 71 -7.3 -3.74516 | opp_overlap 97161, overlap 97163 97177 TATTTTTCCTCTAAA TGCTGTTCC ACAT GGAGCAGTA TTATATATTGCTTTC TERM 142 97163 - 97180 + g 70 -7.7 -3.43636 | opp_overlap 97161, overlap 97161 97177 TTTTTCCTCTAAATG CTGTTCC ACAT GGAGCAG TATTATATATTGCTT BRE_1093 97928 - 97614 - | hypothetical protein TERM 143 98043 - 98009 - H 90 -4.6 -5.81412 | opp_overlap 98019 98028 98041, overlap 98013 98036 TTTATTTAAAAAAAA TCAATTTATTTAAACA TTT TATTTAAACAAATTTA AATATTAATTTAGAT TERM 144 98096 - 98072 - H 100 -14.5 -5.24531 | overlap 98093 ATTTGGTATAAAAAA GAGACTCTTTA CTT TAAAGAGTCTC CAAGGTGAGAAGAAT TERM 145 98711 - 98670 - H 82 -10.5 -2.76605 | opp_overlap 98675 98682 98710, overlap 98669 98696 98700 AAATAGAATTATAAT TTCTTTTAGCAATATGTAT AAAA ATACATATTGCTAATATAA TCACTAGCAAATAGC TERM 146 98675 - 98706 + H 100 -14.8 -2.80816 | opp_overlap 98670 98669 98696 98700, overlap 98682 GAATTATAATTTCTT TTAGCAATATGTAT AAAA ATACATATTGCTAA TATAATCACTAGCAA TERM 147 98710 - 98734 + H 72 -7.2 -3.80018 | opp_overlap 98670 98669 98700 98712, overlap 98712 ACATATTGCTAATAT AATCACTAGC AAATA GCTAGTGATA TTGTTAATATATAAG TERM 148 98712 - 98732 + H 82 -9.8 -3.48053 | opp_overlap 98700 98712, overlap 98710 ATATTGCTAATATAA TCACTAGC AAATA GCTAGTGA TATTGTTAATATATA TERM 149 98732 - 98712 - H 83 -9.8 -3.67052 | opp_overlap 98710 98712, overlap 98700 ATATTGCTAATATAA TCACTAGC AAATA GCTAGTGA TATTGTTAATATATA BRE_1094 99271 - 99915 + | putative lipoprotein TERM 150 100154 - 100181 + F 100 -14.4 -4.1711 | opp_overlap 100149 100154, overlap 100141 AATTTTATAAGTGAA TTACCAGGAAAT AAGT ATTTCCTGGTAA TTTGTTAAAAGTAAT TERM 151 100181 - 100154 - f 100 -14.4 -3.24017 | opp_overlap 100154 100141, overlap 100149 AATTTTATAAGTGAA TTACCAGGAAAT AAGT ATTTCCTGGTAA TTTGTTAAAAGTAAT BRE_1095 100544 - 101647 + | hypothetical protein TERM 152 101814 - 101772 - f 70 -3.7 -5.25735 | gap 2, opp_overlap 101774 101776 101789, overlap 101775 101777 TCAAAAAATTAAAAA GAATACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-ATGA ATTTGTAACGTAAGT TERM 153 101811 - 101775 - f 95 -9.8 -4.64346 | gap 2, opp_overlap 101774 101776 101789, overlap 101772 101777 AAAAATTAAAAAGAA TACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG-A TGAATTTGTAACGTA TERM 154 101776 - 101811 + F 83 -11.4 -2.7083 | gap 1, opp_overlap 101775 101772 101777, overlap 101774 101789 AAAATTAAAAAGAAT ACTCCACCTATAATTTC TAT GAAATT-TAGGTGGAGA TGAATTTGTAACGTA TERM 155 101810 - 101777 - f 100 -14.9 -3.87792 | gap 1, opp_overlap 101776 101774 101789, overlap 101775 101772 AAATTAAAAAGAATA CTCCACCTATAATTTC TAT GAAATT-TAGGTGGAG ATGAATTTGTAACGT TERM 156 102994 - 102974 - f 88 -6.1 -5.39681 | overlap 102978 ATAAGGAAATAAAAA CTAAGGCAG GAA CTGCCTGAA GTAAAGCTTGTGGAC TERM 157 102990 - 102978 - f 83 -9.1 -3.98991 | overlap 102974 GGAAATAAAAACTAA GGCAG GAA CTGCC TGAAGTAAAGCTTGT TERM 158 103103 - 103072 - f 95 -11.2 -4.12603 | gap 1 GGGATGAAACAAGAA GCTATTTCTATAATC TTT GATT-TAGAAATAGC AGTTCACAGAGGAAT BRE_1097 103124 - 104182 + | hypothetical protein TERM 159 104345 - 104361 + F 75 -4.5 -5.11881 | opp_overlap 104348 ATTTAGTGTTTAGAG TAAGAAA AGG TTTCTTG TTGTTTTTTTTATTT TERM 160 104445 - 104431 - f 73 -5.8 -4.62475 | overlap 104426 ATTGATAAATCAAAA CATTTT GGC AAAATG AAAAGTGTTAAAAGA TERM 161 105857 - 105813 - f 75 -4.5 -5.10461 | opp_overlap 105819, overlap 105819 TTTAGTTAATAAAAA TGATAATTAAGCCTTAGATTA TTA TGATTTAAGGCTTAATTTTTA TTTATCGATAAATTA TERM 162 105819 - 105851 + F 100 -12.3 -5.38958 | opp_overlap 105813 105819 TAATAAAAATGATAA TTAAGCCTTAGATTA TTA TGATTTAAGGCTTAA TTTTTATTTATCGAT TERM 163 105851 - 105819 - f 76 -7.9 -3.81195 | opp_overlap 105819, overlap 105813 TAATAAAAATGATAA TTAAGCCTTAGATTA TTA TGATTTAAGGCTTAA TTTTTATTTATCGAT TERM 164 106132 - 106092 - f 81 -8.8 -3.74747 | opp_overlap 106093 106099 106115, overlap 106093 106099 TTAAGTTGTATTAAA TTTAAAATTATATAATAA TATTG TTATTATATAATTTTAAT TATCATATAATATTT TERM 165 106093 - 106131 + F 100 -13 -3.49516 | opp_overlap 106092 106093 106099, overlap 106099 106115 TAAGTTGTATTAAAT TTAAAATTATATAATAAT ATT GTTATTATATAATTTTAA TTATCATATAATATT TERM 166 106131 - 106093 - f 88 -12.3 -2.84527 | opp_overlap 106093 106099 106115, overlap 106092 106099 TAAGTTGTATTAAAT TTAAAATTATATAATAA TATTG TTATTATATAATTTTAA TTATCATATAATATT TERM 167 106099 - 106125 + F 78 -7.6 -4.51777 | opp_overlap 106093 106092 106099, overlap 106093 106115 GTATTAAATTTAAAA TTATATAATAAT ATT GTTATTATATAA TTTTAATTATCATAT TERM 168 106125 - 106099 - f 76 -6.9 -4.37711 | opp_overlap 106099 106093 106115, overlap 106093 106092 GTATTAAATTTAAAA TTATATAATAA TATTG TTATTATATAA TTTTAATTATCATAT TERM 169 107456 - 107466 + F 70 -4 -5.1101 | overlap 107454 GGTAATGCAAACTTT GATT TTC AATC TTTTTTAGATGCTCA TERM 170 108205 - 108181 - f 100 -15.9 -3.17763 | opp_overlap 108181 TTTAGATGGTATTAA GCCTTGGATTA GTA TAATCCAAGGC TTTTTTTAGTTAATT TERM 171 108181 - 108205 + F 100 -15.9 -5.66868 | opp_overlap 108181 TTTAGATGGTATTAA GCCTTGGATTA GTA TAATCCAAGGC TTTTTTTAGTTAATT TERM 172 108999 - 108986 - g 71 -3.9 -5.17744 | opp_overlap 108986, overlap 108980 AGAGAGGAATAAAAA TCATT TTCA AATGA CTTTTAATATGGCAT BRE_1100 108369 - 109166 + | putative lipoprotein TERM 173 110325 - 110339 + F 76 -3.6 -5.5353 | overlap 110319 CGGTTTTAACTTTAT TAAAGG ATT CTTTTA TTTTTTCTTGGTCTA BRE_1102 111063 - 112715 + | putative lipoprotein TERM 174 112763 - 112792 + F 90 -5.9 -5.56673 | gap 1, opp_overlap 112763 ATCAGAATGATTAAA TAAAGCTTTCAAGG TGT TCTTGAG-GCTTTA TTTTTTATTATACAT TERM 175 112851 - 112831 - f 83 -8.5 -4.04397 | opp_overlap 112830 112831 112846 112850, overlap 112846 112850 ATTTGTATAAAAATA TATTTACTT TAT AAGTAAATA GTTTAATTATTATTA TERM 176 112831 - 112851 + F 71 -8.5 -3.07882 | opp_overlap 112831 112846 112850, overlap 112830 112846 112850 ATTTGTATAAAAATA TATTTACTT TAT AAGTAAATA GTTTAATTATTATTA TERM 177 112850 - 112871 + F 72 -3.1 -5.32565 | opp_overlap 112831 112846 112850 112852, overlap 112831 112830 112846 112852 TACTTTATAAGTAAA TAGTTTAAT TATT ATTAAACTC TTTTTTAATTAATTG BRE_1103 113038 - 113673 + | hypothetical protein TERM 178 113697 - 113722 + F 70 -6.3 -4.04174 | gap 1, opp_overlap 113697 TAAATTATTATTTAA CCCTTTCTGATA ATG TGT-AGAAAGGG TTTGATTATATAAAA pncA 115386 - 116000 + | pyrazinamidase/nicotinamidase (pncA) BRE_1106 116208 - 117080 + | hypothetical protein BRE_1107 117250 - 117531 + | hypothetical protein guaA 118098 - 119639 + | GMP synthase (glutamine-hydrolysing) (glutamine amidotransferase) BRE_1109 119669 - 121120 + | inosine-5'-monophosphate dehydrogenase BRE_1110 121396 - 122361 + | hypothetical protein SEQUENCE gi|203288364|ref|NC_011252.1| Borrelia recurrentis A1 plasmid pl23, complete sequence (length 22945) BRE_6004 6437 - 5082 - | guanine-hypoxanthine permease BRE_6005 7017 - 6559 - | putative lipoprotein BRE_6006 7568 - 7056 - | putative lipoprotein BRE_6008 8884 - 8318 - | putative lipoprotein TERM 1 8401 - 8376 - G 70 -4.9 -4.70887 | gap 1 TTAGCAACAAATAAA GATCT-CTTATC TTG AATAAGCAGATC CAAAAAATTTTTCTT TERM 2 8910 - 8943 + H 71 -8.4 -2.85606 | opp_overlap 8902 GATTATACTTTTTCA TCAAAACAAAGTAA ATAAAA TAACTTTGTTTTGA TATAATAATGTATGA TERM 3 9464 - 9432 - g 87 -8 -4.66057 | overlap 9438 ATACAGAAATTAAAA GTAAAATTTCTC AATTAGAAA GAGAAATTTTAC CAATGTATAACAAAT BRE_6009 8981 - 10237 + | hypothetical protein TERM 4 10220 - 10255 + F 74 -8 -3.484 | opp_overlap 10222 10225 10231, overlap 10222 10225 10231 TACTTACATATATAT AATAATAAAAATAATT AATT AATTATTTTTATTATC TTATAATATGGTAAA TERM 5 10253 - 10222 - f 89 -10.6 -3.66896 | opp_overlap 10220 10222 10225 10231, overlap 10225 10231 CTTACATATATATAA TAATAAAAATAATT AATT AATTATTTTTATTA TCTTATAATATGGTA TERM 6 10222 - 10253 + F 86 -10.6 -3.31365 | opp_overlap 10222 10225 10231, overlap 10220 10225 10231 CTTACATATATATAA TAATAAAAATAATT AATT AATTATTTTTATTA TCTTATAATATGGTA TERM 7 10250 - 10225 - f 79 -7.9 -3.95786 | opp_overlap 10222 10220 10225 10231, overlap 10222 10231 ACATATATATAATAA TAAAAATAATT AATT AATTATTTTTA TTATCTTATAATATG TERM 8 10225 - 10250 + F 76 -7.9 -3.78879 | opp_overlap 10225 10222 10231, overlap 10222 10220 10231 ACATATATATAATAA TAAAAATAATT AATT AATTATTTTTA TTATCTTATAATATG TERM 9 10256 - 10308 + F 86 -11.4 -3.13475 | gap 2, opp_overlap 10262 10271, overlap 10261 10264 10271 ATTATTTTTATTATC TTATA-A-TATGGTAAATATTAATTA AAT TAATTAATATTTACCATACTCTATAA TTGCATATCGAATTG TERM 10 10261 - 10301 + F 100 -14.5 -3.01537 | opp_overlap 10262 10271, overlap 10256 10264 10271 TTTTATTATCTTATA ATATGGTAAATATTAATTA AAT TAATTAATATTTACCATAC TCTATAATTGCATAT TERM 11 10300 - 10262 - f 100 -18 -3.34043 | opp_overlap 10261 10256 10264 10271, overlap 10271 TTTATTATCTTATAA TATGGTAAATATTAATTA AAT TAATTAATATTTACCATA CTCTATAATTGCATA TERM 12 10264 - 10298 + F 100 -16.2 -2.73067 | opp_overlap 10262 10271, overlap 10261 10256 10271 TATTATCTTATAATA TGGTAAATATTAATTA AAT TAATTAATATTTACCA TACTCTATAATTGCA TERM 13 10925 - 10939 + F 77 -5.8 -4.79451 | opp_overlap 10914, overlap 10914 TATAGAATTCTTTAA TTCTTT GAA AAAGAA TTTTATCTTTAAAAT TERM 14 11022 - 10994 - f 72 -7.8 -3.45768 | opp_overlap 10997 11010, overlap 10997 11018 GTTAATATTAATCAA TAATATAATTAA CATTT TTAATTATATTA AATTTAATAACAATT TERM 15 12520 - 12499 - g 79 -9.5 -3.32031 | overlap 12497 12495 12500 AGGAAATATAACATA CCTTGATGC ATGT GCATCAAGA TTAAGAATAAATGTT TERM 16 12519 - 12500 - g 84 -10.8 -2.58134 | overlap 12499 12497 12495 GGAAATATAACATAC CTTGATGC ATGT GCATCAAG ATTAAGAATAAATGT malX 11054 - 12685 + | PTS system, maltose and glucose-specific IIABC component acyP 12768 - 13052 + | acylphosphatase BRE_6012 13518 - 13027 - | hypothetical protein TERM 17 13512 - 13496 - G 70 -5.3 -4.53034 | TCCATACAATTAAAA TATATTA CAA TAATATA AATCAAAATATTTAA resT 14932 - 13574 - | telomere resolvase TERM 18 14623 - 14656 + g 77 -6.3 -4.68601 | gap 1, opp_overlap 14621 CAATATTAGAAAGTT CTTTTATTTCTTTAGG AAT CCAAAA-AAATAAAAG TTTATTCTTTTGCCT BRE_6014 15661 - 15020 - | hypothetical protein TERM 19 15597 - 15587 - G 74 -4 -5.243 | TAAAGGAGTAAAAAA TTTC GAA GAAA CATCAAAATTACAAG TERM 20 16234 - 16224 - g 74 -4 -5.2204 | CATAATCAATAAAAA TCTT GAA AAGA TGGCTAATAAAGCAA TERM 21 16250 - 16262 + G 72 -6.3 -4.36914 | opp_overlap 16250 TGGCTAATAAAGCAA TAAGC ACA GCTTA TTTTATACAAAAAAA BRE_6015 15925 - 16863 + | hypothetical protein ppap1 16886 - 17446 + | plasmid partitioning associated protein-1 TERM 22 17561 - 17573 + G 77 -6.3 -4.76892 | opp_overlap 17561 17560 ATTTAGATCCACAAG CTAGT AGT ACTAG TTTTTACATTAATAT pf32 17422 - 18186 + | PF32 plasmid partition protein TERM 23 18228 - 18183 - f 100 -21.7 -3.46848 | gap 1, opp_overlap 18183 18192 18196, overlap 18187 18197 GAAAATTTATCATAA CTAATAGTTCCAAAT-GGAACT AAT AGTTCCAATTTGGAACTATTAG TTTAAAGAGGTGTAT TERM 24 18183 - 18228 + F 100 -21.7 -3.5525 | gap 1, opp_overlap 18183 18187 18197, overlap 18192 18196 GAAAATTTATCATAA CTAATAGTTCCAAAT-GGAACT AAT AGTTCCAATTTGGAACTATTAG TTTAAAGAGGTGTAT TERM 25 18224 - 18187 - f 100 -16.7 -3.4759 | gap 1, opp_overlap 18183 18192 18196, overlap 18183 18197 ATTTATCATAACTAA TAGTTCCAAAT-GGAACT AAT AGTTCCAATTTGGAACTA TTAGTTTAAAGAGGT TERM 26 18233 - 18197 - f 89 -11.1 -3.61328 | opp_overlap 18196 18183 18192, overlap 18187 18183 ACTAATAGTTCCAAA TGGAACTAATAGTTCCA ATT TGGAACTATTAGTTTAA AGAGGTGTATGATGA pf49 18242 - 18796 + | PF49 plasmid partition protein TERM 27 18993 - 19010 + T 74 -7 -4.2331 | TTAGAATAATAGGTT GGCTAC AATAAA GTAGCC TTTGTCATTTTAATT TERM 28 19154 - 19212 + T 100 -8.6 -5.9362 | opp_overlap 19156 19160, overlap 19156 TTTGGTTTGTAAATA AATAAAGAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTCTTTATA TTTTTTTATATTTTG TERM 29 19156 - 19210 + T 100 -11.2 -4.5577 | opp_overlap 19156 19160, overlap 19154 TGGTTTGTAAATAAA TAAAGAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTCTTTA TATTTTTTTATATTT TERM 30 19210 - 19156 - T 95 -11.2 -4.41348 | opp_overlap 19156 19154, overlap 19160 TGGTTTGTAAATAAA TAAAGAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTCTTTA TATTTTTTTATATTT TERM 31 19206 - 19160 - T 86 -7.6 -4.78326 | opp_overlap 19156 19154, overlap 19156 TTGTAAATAAATAAA GAGCTTTAAAATTAACTTTA TGTGTTT TTAGGTTAACTTTAAAGCTC TTTATATTTTTTTAT BRE_6019 19737 - 19198 - | hypothetical protein TERM 32 20107 - 20124 + H 100 -5.7 -7.14698 | opp_overlap 20110 TTTCTTAAATTTTAA GTATATA TATA TATATAC TTTTTTTTTTTTTTT TERM 33 20175 - 20205 + H 100 -7.2 -5.60993 | opp_overlap 20181, overlap 20176 TTTTTTTTTGAGGTT ATTTAATTATAAAT AAA ATTTATAATTAAAA TTTTTTTGTAAAAAC TERM 34 20176 - 20204 + H 93 -10.7 -3.95873 | opp_overlap 20181, overlap 20175 TTTTTTTTGAGGTTA TTTAATTATAAAT AAA ATTTATAATTAAA ATTTTTTTGTAAAAA vlp-b 20295 - 21386 + | vlp protein, beta subfamily TERM 35 22104 - 22115 + T 78 -4.4 -5.30575 | overlap 22101 ATTTTACTATCACTA GTCT CTCT AGAC TTTTTTACATTTTTA BRE_6021 22582 - 22154 - | family 88-like protein SEQUENCE gi|203288382|ref|NC_011253.1| Borrelia recurrentis A1 plasmid pl33, complete sequence (length 33213) bdr_1 884 - 375 - | BdrQ-like protein TERM 1 1004 - 969 - R 100 -7.8 -5.09895 | opp_overlap 975 978, overlap 972 TAGCCACTTAAAAAA TAATAAGACCAACAAC AAAA GTTATTGATCTTATTC AAGGGTATATTTATA TERM 2 1001 - 972 - R 95 -9.5 -4.64763 | opp_overlap 975 978, overlap 969 CCACTTAAAAAATAA TAAGACCAACAAC AAAA GTTATTGATCTTA TTCAAGGGTATATTT TERM 3 1099 - 1109 + r 81 -2.6 -6.07374 | overlap 1102 ATAGATAAAATTGAT TATT GAA AATA TTTTTTATTTTTTCT BRE_5002 1406 - 1164 - | hypothetical protein BRE_5003 1999 - 1694 - | hypothetical protein TERM 4 4905 - 4879 - H 70 -3.7 -5.20781 | CACCACAAAATAAAA GATACCAAGAG ATTAA CTCGCAGTATC TTTCTTTTATAACTT TERM 5 5352 - 5362 + H 85 -5.4 -5.31275 | ACAGCCTTTGATGCA TCAG TTG CTGA TTTTTTATCATCCGC TERM 6 6009 - 6035 + H 82 -10.4 -2.83772 | opp_overlap 6013, overlap 6008 6005 6033 TTTATCCTATTTATA TGAACTAATAAT CTT ATTGTTAGTTCA ATCTTTTAATGACAT TERM 7 8962 - 8950 - g 93 -3.5 -6.15717 | overlap 8961 GAAACACAAAAAAAA TATTT TAA AAATA TAGGGTATAAAACTT BRE_5009 8521 - 9198 + | hypothetical protein ppap1 9182 - 9784 + | plasmid partitioning associated protein-1 TERM 8 9958 - 9936 - g 83 -7.9 -4.71234 | opp_overlap 9925 9939 9941, overlap 9937 AAAGTTAATAGAAAA TGATATTGA TGTTG TCAATATCA ATATCTATAGAGTTT TERM 9 9963 - 9937 - g 73 -8.2 -3.41114 | opp_overlap 9925 9939 9941, overlap 9936 AAGTTAATAGAAAAT GATATTGATGTT GTC AATATCAATATC TATAGAGTTTTAAAT pf32 9760 - 10512 + | PF32 plasmid partition protein TERM 10 10524 - 10498 - f 86 -8.8 -4.24342 | opp_overlap 10504, overlap 10504 TTTTTGACTAAGAAA TTAATAGTGCGT TAA ACGCACTTTCAA AGGAGCCAAAATGAA TERM 11 10518 - 10504 - f 82 -10 -3.42564 | opp_overlap 10504, overlap 10498 ACTAAGAAATTAATA GTGCGT TAA ACGCAC TTTCAAAGGAGCCAA TERM 12 10504 - 10518 + F 84 -10 -3.53012 | opp_overlap 10504 10498 ACTAAGAAATTAATA GTGCGT TAA ACGCAC TTTCAAAGGAGCCAA pf49 10535 - 11134 + | PF49 plasmid partition protein TERM 13 11206 - 11250 + F 100 -15.5 -4.78839 | opp_overlap 11209, overlap 11197 GTCTTTGAACTTTAG TAAGTTCTGTTGATGATTTTA AGC TAGAATTATCAATAGAACTTA TTTTATTGTGAAATT TERM 14 12389 - 12428 + F 88 -5.2 -5.61824 | opp_overlap 12390, overlap 12397 TAAAAAATCAAATAA GGAAAACACTTTTCTATT TATG GATGGAGAAGTTTTTTTC TTTTTTTGCATTTTA TERM 15 12397 - 12420 + F 93 -3.2 -6.32976 | opp_overlap 12390, overlap 12389 CAAATAAGGAAAACA CTTTTCTATT TATG GATGGAGAAG TTTTTTTCTTTTTTT TERM 16 12990 - 13015 + F 70 -7.9 -3.12253 | opp_overlap 12985 12989 12990 13001, overlap 12990 12994 ATATTTATAATAAAT TAAATTTAAAA TTTA TTTTAAATTTA TCATTTGTATTAGTA TERM 17 13015 - 12990 - f 70 -7.9 -3.1997 | opp_overlap 12990 12990 12994, overlap 12985 12989 13001 ATATTTATAATAAAT TAAATTTAAAA TTTA TTTTAAATTTA TCATTTGTATTAGTA TERM 18 14142 - 14126 - g 76 -3.8 -5.42862 | opp_overlap 14126 AGATTTTTAAAAAAA TGTATT CTTTT AATACA TCTTCTAAGAGCTTA BRE_5014 13336 - 14223 + | putative lipoprotein TERM 19 14406 - 14429 + T 90 -4.8 -5.86976 | opp_overlap 14400 14411, overlap 14396 14400 TTTTATTAATTTTAT TAAAATTTTT TCAA AAAAGTTTTA TTTTTTATTTTATGC BRE_5015 14969 - 14439 - | putative lipoprotein TERM 20 15509 - 15499 - H 81 -5.4 -5.22794 | opp_overlap 15499 AGAATTAGCAAAAAA CTAG TCC CTAG TTAGGTTTTGAGAAT BRE_5016 15782 - 16375 + | hypothetical protein TERM 21 16507 - 16541 + F 84 -5.9 -5.1417 | gap 1, opp_overlap 16506 16510, overlap 16510 AAAGGAGAGGAAAAT G-AATCCCAAAGCTAG GTAT TTATCTTTGGGATTAC TTTTTAGTTTTATAA TERM 22 16510 - 16537 + F 79 -7.8 -3.91947 | opp_overlap 16506 16510, overlap 16507 GGAGAGGAAAATGAA TCCCAAAGCTAG GTAT TTATCTTTGGGA TTACTTTTTAGTTTT TERM 23 17066 - 17083 + F 90 -4.8 -5.95539 | opp_overlap 17056 17066 AAGAACCTTATTAAA GGGAGC AATAAA GCTCTC TTTTTTTATTTGCGG vlp-d_1 17194 - 18240 + | vlp protein, delta subfamily TERM 24 18304 - 18321 + T 100 -7 -5.95539 | opp_overlap 18303 18306 TAAAACTTAGTTAAT GAGAGC AAAAGA GCTCTC TTTTTTTATTTGCGG TERM 25 19032 - 19022 - T 70 -5.4 -4.56702 | opp_overlap 19022 CTTGAATTAAAGAAA GCAT ATA ATGC ATTTAAAGGAATTGT TERM 26 19629 - 19647 + T 77 -6 -4.78326 | opp_overlap 19631 19638, overlap 19638 AAGAATGTTGGCGAA GAGAGC AAATAAA GCTCTC TTTATTTATTTGCAG TERM 27 20138 - 20167 + T 86 -8 -4.72729 | opp_overlap 20146, overlap 20139 TTTGATTATTATTTG ATTAGCAACTAC GATTTA GTAGTTGCTAAA TTTTGATTTTACTTG TERM 28 20139 - 20166 + T 90 -11.5 -3.4201 | opp_overlap 20146, overlap 20138 TTGATTATTATTTGA TTAGCAACTAC GATTTA GTAGTTGCTAA ATTTTGATTTTACTT BRE_5020 20918 - 20211 - | ORFk-like protein, lipoprotein TERM 29 20891 - 20902 + g 73 -3 -5.42605 | opp_overlap 20891 ATAATGTAATATAAA GTAT TAGT ATAC TTTTATTTTTATTCA TERM 30 21278 - 21265 - H 86 -6.7 -4.98531 | opp_overlap 21264 TGCTTAAATTAAAAA GCAAC AGAT GTTGC CTAATATAAAATTAT TERM 31 21293 - 21319 + H 72 -4.5 -5.09225 | opp_overlap 21293, overlap 21295 CCTAATATAAAATTA TTGGTATCTTT CCTAT AAAGATGCCTA TTTTTTAAGTAAAGT TERM 32 21295 - 21317 + H 73 -7.1 -4.17608 | opp_overlap 21293, overlap 21293 TAATATAAAATTATT GGTATCTTT CCTAT AAAGATGCC TATTTTTTAAGTAAA bdr_2 22497 - 23315 + | bdr proitein TERM 33 23711 - 23694 - f 71 -7 -3.89346 | opp_overlap 23694 AAAAATATTAGTAAA GAGAGC AATAAA GCTCTC TTTTTTTATTTTCTG TERM 34 23694 - 23711 + F 100 -7 -6.14618 | opp_overlap 23694 AAAAATATTAGTAAA GAGAGC AATAAA GCTCTC TTTTTTTATTTTCTG TERM 35 24694 - 24734 + F 77 -8.3 -3.56643 | opp_overlap 24703 AGTGATGCTAATGGT GCTAAGGCAGCTACTAA TGCAGAC TTAGCAGCAGCCGTAGC TTTAAAGGCTATGAC bdr_3 25763 - 26233 + | bdr proitein TERM 36 27623 - 27641 + F 83 -3.8 -5.95539 | AAAATAATTAGTTAA GAGGGC TTCTTTT GCTCTC TTTTTTTATTTGCGG vsp_1 27849 - 28460 + | vsp protein TERM 37 28554 - 28574 + F 100 -9.1 -5.89659 | opp_overlap 28554 28553 TTAATAAATTTAAAG CTGAGAGTA TGG TACTCTTAG TTTTTGTTTTTTTAT TERM 38 29857 - 29874 + F 100 -7 -5.56264 | opp_overlap 29857, overlap 29862 AGAAATATTAGTGAA GAGAGC AATAAA GCTCTC TTTTTTGTATTTCCG vlp-d_2 29972 - 31084 + | vlp protein, delta subfamily TERM 39 31137 - 31157 + F 83 -4 -5.83822 | opp_overlap 31137 AAGAATGCTGATAAA GAGAGC ACTAATGAA GCTCTC TTTTTTTTGAGTGTA vsp_2 31362 - 31943 + | vsp protein SEQUENCE gi|203288400|ref|NC_011255.1| Borrelia recurrentis A1 plasmid pl35, complete sequence (length 35315) BRE_4002 1993 - 1496 - | BBK32-like protein TERM 1 1611 - 1621 + g 72 -6.8 -4.08767 | ACTTCTTTCTCTGTG CCTC TAA GAGG TTTTCCCCCAGTCAA TERM 2 3315 - 3285 - R 71 -2.7 -5.5762 | gap 1 AGCAAATATAAAAAA GCAGAAATA-CTTA CATA CAAGGCATTCCTGC TTGTCAAAATTTATA vlp_1 4521 - 3385 - | vlp protein TERM 3 4252 - 4222 - G 84 -9.2 -3.97209 | TGAAGTAAGACCAAA TGTATCTTTTAGTA TAT TTCCAAAAGATACA AAAACCTCCAAAAAT TERM 4 4556 - 4539 - R 93 -4.8 -6.09196 | TCGAAAATAAAAAAA GAGAGC TTTATT GCTCCC TCTACCAGCCTTTTT TERM 5 5866 - 5849 - R 100 -7 -6.23545 | opp_overlap 5849 CGCAAATAAAAAAAA GAGAGC TTTATG GCTCTC TTTACTAATAATTTT TERM 6 5849 - 5866 + r 74 -7.7 -3.83705 | opp_overlap 5849 CGCAAATAAAAAAAA GAGAGCT TTAT GGCTCTC TTTACTAATAATTTT bdr_1 6993 - 6301 - | bdr proitein TERM 7 7620 - 7636 + H 82 -8 -4.2074 | ATTTGCAACCCATTC GCCAGT AGTAC ACTGGC TTTATATGTTGGCAA TERM 8 7901 - 7927 + H 72 -4.5 -5.09225 | opp_overlap 7901, overlap 7903 CCTAATATAAAATTA TTGGTATCTTT CTCAT AAAGATGCCTA TTTTTTAAGTAAAGT TERM 9 7903 - 7925 + H 73 -7.1 -4.17608 | opp_overlap 7901, overlap 7901 TAATATAAAATTATT GGTATCTTT CTCAT AAAGATGCC TATTTTTTAAGTAAA TERM 10 8930 - 8919 - g 73 -3 -5.42605 | opp_overlap 8919 TGAATAAAAATAAAA GTAT ATTA ATAC TTTGCATTATATTAT BRE_4008 8903 - 9598 + | ORFk-like protein TERM 11 9646 - 9673 + F 77 -9.3 -3.34043 | opp_overlap 9645 9643 9646, overlap 9647 AAGATAAGTAAACAT TTAGCAACTAC GAGTTA GTAGTTGCTAG TTATACAATAATCAA TERM 12 9647 - 9672 + F 82 -10.6 -2.60212 | opp_overlap 9646 9645 9643, overlap 9646 AGATAAGTAAACATT TAGCAACTAC GAGTTA GTAGTTGCTA GTTATACAATAATCA BRE_4009 9763 - 10272 + | MlpL-like protein; lipoprotein TERM 13 10337 - 10319 - f 100 -9 -5.02357 | overlap 10309 TATAAGTAAACAAAA TGTTAACT TGA AGTTAACA CAGAAAGATAAATTA TERM 14 10376 - 10365 - f 82 -4.4 -5.66926 | TTAAAAAAAAGAAAA GAGA TATC TCTC ATTACAAATAGATGG TERM 15 11496 - 11464 - f 88 -10.1 -4.01184 | opp_overlap 11464 11463 ATATATTACTATAAA CTAACAAAAAGAAGT TAC AATTCTCTTTGTTAG AATTTTTTATTTTAG TERM 16 11591 - 11581 - f 70 -4 -5.16151 | TAAACTTAACAAAAA TCAA GAT TTGA CATAATAAATAAGCA TERM 17 12395 - 12369 - f 82 -8.2 -4.36914 | opp_overlap 12369 12372 GGCTCGCTTACAAAA TAATACACAATT AAA AATTGTGCATCA TCTTTCCACTAGCCT TERM 18 14144 - 14130 - f 71 -5.8 -4.44277 | TATGAAAATTCAAAA GATAAT TCT ATTATC AAGATTAATTTCTCT TERM 19 14491 - 14504 + F 100 -9.5 -5.19328 | AAATTAATTATTTAG GCCCC TTAT GGGGC TTTTTATTATCACGT TERM 20 14833 - 14777 - f 100 -23.1 -3.15583 | opp_overlap 14780, overlap 14780 TTAACAGATTCAAGA TAATTTTTTATTTAAGTGATAAACTAC TAA ATAGCTTATCACTTAAATAAAAAATTA TACATATTTCTTGAT TERM 21 14780 - 14830 + F 100 -17.5 -3.46874 | opp_overlap 14777 14780 ACAGATTCAAGATAA TTTTTTATTTAAGTGATAAACTA CTAAA TAGCTTATCACTTAAATAAAAAA TTATACATATTTCTT TERM 22 14830 - 14780 - f 100 -20.4 -3.70848 | opp_overlap 14780, overlap 14777 ACAGATTCAAGATAA TTTTTTATTTAAGTGATAAACTAC TAA ATAGCTTATCACTTAAATAAAAAA TTATACATATTTCTT TERM 23 15398 - 15409 + F 72 -3 -5.27335 | TGATAATTATATCTA TCTT CACT AAGA TTTTTGTTTACGCAA TERM 24 15704 - 15659 - f 84 -5.8 -5.1963 | opp_overlap 15671, overlap 15661 TTTAATTAATAAAAA GTTTGCTTATTATTAACAAT TAAGTT ATTATTAATAATAAGAAAGC TACATAGGAGGCTCG BRE_4016 15721 - 16425 + | hypothetical protein ppap1 16454 - 17014 + | plasmid partitioning associated protein-1 TERM 25 17710 - 17739 + G 84 -9.7 -3.56568 | opp_overlap 17700 17718 17719 GAATATAAGAATTCC TTAATTAATTTTT TTGC AAAAATTAATTAA TTTGAAAACTAGTTC pf32 16990 - 17739 + | PF32 plasmid partition protein TERM 26 17769 - 17748 - f 74 -6.7 -4.21768 | opp_overlap 17751, overlap 17749 TAATTAATTTGAAAA CTAGTTCAA CAGG TTGAACTAA TATAAATATAATTTA TERM 27 17768 - 17749 - f 70 -8 -3.12338 | opp_overlap 17751, overlap 17748 AATTAATTTGAAAAC TAGTTCAA CAGG TTGAACTA ATATAAATATAATTT pf49 17796 - 18371 + | PF49 plasmid partition protein TERM 28 18614 - 18670 + T 100 -21.5 -5.63517 | opp_overlap 18610 18607 18614 18620 TTTAAAAGGCAGAGA TTTAAATCCCTGTTAACAATTTTATTG TAA TAATATAGTTGTTAACAGGGATTTAAA TTTTTTGTTTCAAAA TERM 29 18670 - 18614 - T 100 -18.6 -3.00786 | opp_overlap 18614, overlap 18610 18607 18620 TTTAAAAGGCAGAGA TTTAAATCCCTGTTAACAATTTTATT GTAAT AATATAGTTGTTAACAGGGATTTAAA TTTTTTGTTTCAAAA TERM 30 18664 - 18620 - T 100 -13.2 -3.74345 | opp_overlap 18614, overlap 18610 18607 18614 AGGCAGAGATTTAAA TCCCTGTTAACAATTTTATT GTAAT AATATAGTTGTTAACAGGGA TTTAAATTTTTTGTT TERM 31 20401 - 20411 + T 70 -4 -5.16133 | TATCATGACGCTTAG TGAA AGA TTCA TTTTTATCTTATAGT TERM 32 20501 - 20528 + T 83 -9.4 -3.73224 | opp_overlap 20501 20504, overlap 20504 AGGTGAGTGAAGAGA TAATGCACAATT TTTT AATTGTGTATTA TTTGGTAAGCGATCA TERM 33 20504 - 20525 + T 71 -6.7 -4.00042 | opp_overlap 20501 20504, overlap 20501 TGAGTGAAGAGATAA TGCACAATT TTTT AATTGTGTA TTATTTGGTAAGCGA TERM 34 22432 - 22452 + T 70 -5.5 -4.62392 | overlap 22433 22442 22445 TTAACTTGTCCTTCT ATGTTAACT TCA AGTTAACAA TTTGTTTACTTATTC TERM 35 22433 - 22451 + T 77 -9 -3.35809 | overlap 22432 22442 22445 TAACTTGTCCTTCTA TGTTAACT TCA AGTTAACA ATTTGTTTACTTATT BRE_4024 23014 - 22583 - | MlpL-like protein TERM 36 23186 - 23215 + H 76 -8 -3.70003 | opp_overlap 23194, overlap 23184 23187 CTTGATTATTATTTG ATTAGCAACTAC GAGTTA GTAGTTGCTAAA TGTTTACTTATTTTT TERM 37 23187 - 23214 + H 87 -11.5 -2.79562 | opp_overlap 23194, overlap 23186 23184 TTGATTATTATTTGA TTAGCAACTAC GAGTTA GTAGTTGCTAA ATGTTTACTTATTTT TERM 38 23322 - 23336 + H 78 -2.9 -5.96521 | overlap 23332 ATCTTCAAGTATGTC TTTCA TTATT TGAAA TTTTTTTTCATTAGT TERM 39 23629 - 23652 + H 86 -9 -4.23213 | opp_overlap 23628 23632 23635, overlap 23633 GCCTTATCTAAAATC CAAGTACGAA AGAT TTCGTATTTG TTTATTGGATCTAGA TERM 40 23633 - 23648 + H 76 -6.2 -4.69214 | opp_overlap 23632 23628 23635, overlap 23629 TATCTAAAATCCAAG TACGAA AGAT TTCGTA TTTGTTTATTGGATC TERM 41 23733 - 23745 + H 86 -4.9 -5.65513 | opp_overlap 23733 AAACCCGTACATTAA TAGAT CAA ATCTA TTTTTTTCCTTAGTA TERM 42 23880 - 23891 + H 86 -3 -6.13503 | opp_overlap 23880 ATAATATAATGCAAA GTAT CAAT ATAC TTTTTTTTATTCATA BRE_4025 24060 - 24599 + | family 115-like protein TERM 43 24902 - 24880 - f 71 -7.1 -3.94812 | opp_overlap 24878, overlap 24878 CTTTACTTAAAAATA GGCATCTTT ATGAG AAAGATACC AATAATTTTATATTA bdr_2 26002 - 26475 + | bdr proitein TERM 44 27389 - 27367 - f 81 -9 -3.7347 | GCTAATAGTGAAGAA GCACAAGCCG CAG CGGCAAGTGC ATCAATAGGGGCAGT TERM 45 27859 - 27876 + F 100 -7 -5.95539 | opp_overlap 27858 27861 AAAAACTTAGTTAAT GAGAGC GATAGG GCTCTC TTTTTTTATTTGCAG vsp 28035 - 28739 + | vsp protein TERM 46 28793 - 28818 + F 100 -8.3 -5.73978 | opp_overlap 28795 AAAAAAGTTGGTGAA GAGAGCTTAGC TTAT GTTTAGCTCTC TTTTTTATTTATAGT TERM 47 30837 - 30854 + F 93 -4.8 -6.09196 | AAAAAGGCTGGTAGA GGGAGC AATAAA GCTCTC TTTTTTTATTTTCAA TERM 48 31141 - 31171 + G 84 -9.2 -3.97209 | ATTTTTGGAGGTTTT TGTATCTTTTGGAA ATA TACTAAAAGATACA TTTGGTCTTACTTCA vlp_2 30872 - 32008 + | vlp protein TERM 49 32078 - 32108 + F 71 -2.7 -5.5762 | gap 1 TATAAATTTTGACAA GCAGGAATGCCTTG TATG TAAG-TATTTCTGC TTTTTTATATTTGCT TERM 50 33782 - 33772 - g 72 -6.8 -4.08767 | TTGACTGGGGGAAAA CCTC TTA GAGG CACAGAGAAAGAAGT TERM 51 33935 - 33917 - g 70 -8.2 -3.06312 | opp_overlap 33917, overlap 33921 AAATTTGGGATTCAA GTAACTTC TTT GAAGTCAC TTATAATTCTGCATA BRE_4034 33400 - 34647 + | antigenic protein P35 SEQUENCE gi|203288416|ref|NC_011258.1| Borrelia recurrentis A1 plasmid pl37, complete sequence (length 36869) BRE_3002 1073 - 1924 + | antigen P35-like protein TERM 1 1959 - 1986 + T 100 -7.9 -5.10208 | ATAACTCAAATCTTA TAGAGAGGAAA TAACTT TTTTCTCTCTA TTTTTATTGCAATTA BRE_3003 3325 - 2333 - | putative lipoprotein TERM 2 4863 - 4819 - R 83 -3.8 -5.88565 | gap 1, overlap 4820 TGTATAACAAAAAAA GCCAGCCTGCAT-CTTTAAAT CAAT ATTTAAAATACGCAAACTGGA TCAGGTGGTGGCTCA TERM 3 4862 - 4820 - R 75 -7.3 -4.11512 | gap 1, overlap 4819 GTATAACAAAAAAAG CCAGCCTGCAT-CTTTAAAT CAAT ATTTAAAATACGCAAACTGG ATCAGGTGGTGGCTC thy1 7024 - 6191 - | thymidylate synthase-complementing protein BRE_3006 8027 - 7263 - | hypothetical protein TERM 4 8094 - 8110 + H 78 -4.5 -5.36441 | overlap 8091 CAATTTTGGCATTTA TGTTATA ATA TATAGCA TTTTTTATATAGAAC BRE_3007 8318 - 9274 + | BBK01-like protein TERM 5 9359 - 9329 - f 74 -6.9 -4.23723 | opp_overlap 9326 9329 9330, overlap 9330 CAATAGTATTTAAAA GGAGAGTCTTCTT GTTGA AAGGAGACTCTCT TAGGTTTTATTTAAG TERM 6 9330 - 9358 + F 100 -12.6 -3.48914 | opp_overlap 9329 9330, overlap 9329 9326 AATAGTATTTAAAAG GAGAGTCTTCTT GTTGA AAGGAGACTCTC TTAGGTTTTATTTAA TERM 7 9358 - 9330 - f 85 -10.4 -3.13511 | opp_overlap 9329 9330 9326, overlap 9329 AATAGTATTTAAAAG GAGAGTCTTCTT GTTGA AAGGAGACTCTC TTAGGTTTTATTTAA BRE_3008 9822 - 10415 + | hypothetical protein TERM 8 11499 - 11482 - g 71 -2.7 -5.54907 | TTTATAAAAGAAAAA CTTGAGA GAGA TCTTAAG ACACTATTAAATTAC BRE_3009 10546 - 11742 + | immunogenic protein P35 TERM 9 11873 - 11907 + T 100 -7.4 -5.8096 | opp_overlap 11876, overlap 11876 TATGTGTAGATTTGT AAATGCAATATATTAA AAA TAAATATATTGCATTG TTTTTATTTTTTGTA TERM 10 11876 - 11904 + T 93 -9.1 -4.8855 | opp_overlap 11876, overlap 11873 GTGTAGATTTGTAAA TGCAATATATTAA AAA TAAATATATTGCA TTGTTTTTATTTTTT TERM 11 11904 - 11876 - T 79 -9.1 -3.59262 | opp_overlap 11876 11873 GTGTAGATTTGTAAA TGCAATATATTAA AAA TAAATATATTGCA TTGTTTTTATTTTTT TERM 12 13133 - 13116 - T 100 -5.5 -5.95539 | CTGTAAATAAAAAAA GAGAACC TCAT GGCTCCC TTTACTAATATTCTT vlp-d_1 14163 - 13171 - | vlp protein, delta subfamily TERM 13 14679 - 14707 + r 71 -6 -4.41895 | opp_overlap 14679 GACACAATAAAAAAA GGATACTAAGAG CTTAA CTCCCAGTATCC TTTTACTTCACAATT TERM 14 14707 - 14679 - R 100 -11.1 -5.9218 | opp_overlap 14679 GACACAATAAAAAAA GGATACTAAGAGC TTA ACTCCCAGTATCC TTTTACTTCACAATT vlp-c 15795 - 14770 - | vlp protein, gamma subfamily bdr 16063 - 16653 + | bdr proitein TERM 15 17395 - 17349 - T 100 -12.6 -5.4433 | ACACACAAATAAAAA GTGGATTTTGTTGATAAAATTA GAA TAAAATTACCAACAAAACCCAC TAAAGGTTATAAAAT pf32 18884 - 18123 - | PF32 plasmid partition protein TERM 16 18188 - 18212 + g 70 -2.9 -5.27476 | CTTCCTTAAAATTAG GTTCTTTCAAA TCA TTTGCAAAAAC TTTTATTTTGTTAGA ppap1 19435 - 18860 - | plasmid partitioning associated protein-1 BRE_3017 20191 - 19508 - | hypothetical protein TERM 17 20251 - 20265 + H 80 -4.4 -5.54907 | opp_overlap 20251 20260 20262 20263, overlap 20262 AGTTTTATTAAAAAG TAAATA CAA TATTTA TTTTTATTTTATAAA TERM 18 20262 - 20320 + H 76 -9.8 -2.86217 | gap 2, opp_overlap 20251 20260 20262 20263 20300, overlap 20251 20268 20281 AAAGTAAATACAATA T--TTATTTTTATTTTATAAATTTCTTT TTTAC AAAGAAATTTATAAAATAAAAATAAGGA GTTTAAGTGTTACTA TERM 19 20318 - 20262 - H 100 -17.4 -3.53929 | opp_overlap 20251 20262 20268 20281, overlap 20251 20260 20263 20300 AAAGTAAATACAATA TTTATTTTTATTTTATAAATTTCTTT TTTAC AAAGAAATTTATAAAATAAAAATAAG GAGTTTAAGTGTTAC TERM 20 20317 - 20263 - H 100 -20.9 -2.70731 | opp_overlap 20251 20262 20268 20281, overlap 20251 20260 20262 20300 AAGTAAATACAATAT TTATTTTTATTTTATAAATTTCTTT TTTAC AAAGAAATTTATAAAATAAAAATAA GGAGTTTAAGTGTTA TERM 21 20488 - 20459 - H 77 -5.3 -5.07053 | opp_overlap 20452 20458, overlap 20449 20446 AACTATTTTAAAAAA TTTTTTATTTTTT AAAT AAGAAATAAAAAA GTAGTATTAAAGAAA TERM 22 20534 - 20552 + H 83 -4.7 -5.60689 | TTTAGATATTTTCAT TTATATG CCTAT CATATAA TTTTTTCTTATATCA TERM 23 21162 - 21172 + H 87 -2.6 -6.28401 | opp_overlap 21162 TAAAGAATAAAGTTA TTTT AGT AAAA TTTTTTTGTTTTTTA vlp-a 21328 - 22302 + | vlp protein, alpha subfamily TERM 24 22433 - 22450 + F 100 -7 -5.95539 | opp_overlap 22433 22435 AAATATTAGTAGATA GAGAGC AATAAA GCTCTC TTTTTTTATTTGCAG vsp_1 22933 - 23577 + | vsp protein TERM 25 23681 - 23655 - f 76 -8.1 -3.724 | opp_overlap 23655 AAGTTATGAAGATAA GATACTTAGAG TTAAT CTCTTAGTATC TTTTGTTTTATTGTG TERM 26 23655 - 23681 + F 100 -8.1 -5.31091 | opp_overlap 23655 AAGTTATGAAGATAA GATACTTAGAG TTAAT CTCTTAGTATC TTTTGTTTTATTGTG vlp-d_2 23823 - 24917 + | vlp protein, delta subfamily TERM 27 25009 - 25027 + F 83 -3.8 -5.95539 | AAAATAATTAGTTAA GAGGGC TTCTTTT GCTCTC TTTTTTTATTTGCGG vsp_2 25266 - 25847 + | vsp protein TERM 28 25941 - 25961 + F 100 -9.1 -5.89659 | opp_overlap 25940 25941 TTAATAAATTTAAAG CTGAGAGTA TGG TACTCTTAG TTTTTGTTTTTTTAT TERM 29 27244 - 27261 + F 100 -7 -5.56264 | opp_overlap 27244, overlap 27249 AGAAATATTAGTGAA GAGAGC AATAAA GCTCTC TTTTTTGTATTTCCG vlp-d_3 27359 - 28471 + | vlp protein, delta subfamily TERM 30 28524 - 28544 + F 83 -4 -5.83822 | opp_overlap 28524 AAGAATGCTGATAAA GAGAGC ACTAATGAA GCTCTC TTTTTTTTGAGTGTA vsp_3 28749 - 29330 + | vsp protein SEQUENCE gi|203288436|ref|NC_011260.1| Borrelia recurrentis A1 plasmid pl53, complete sequence (length 52772) bdr_1 1386 - 850 - | bdr proitein TERM 1 1719 - 1750 + H 95 -11.2 -4.12603 | gap 1, opp_overlap 1717, overlap 1709 GATTCGTAGTGAACT GCTATTTCTA-AATC AAA GATTATAGAAATAGC TTCTTGTTTCATCCC TERM 2 1828 - 1848 + H 88 -6.1 -5.39681 | overlap 1832 GTCCACAAGCTTTAC TTCAGGCAG TTC CTGCCTTAG TTTTTATTTCCTTAT TERM 3 1832 - 1844 + H 83 -9.1 -3.98991 | overlap 1828 ACAAGCTTTACTTCA GGCAG TTC CTGCC TTAGTTTTTATTTCC TERM 4 2471 - 2485 + H 77 -5.8 -4.78981 | opp_overlap 2471 TCTTACGCATCCAAA TACTTT TGA AAAGTA TTTCTTTTGATTAGT TERM 5 2985 - 3042 + H 100 -24.1 -2.80958 | gap 1, opp_overlap 2988 2992, overlap 2985 2988 2992 AATAAATCCATTTAT TAACAAATTCATCTCCACCTATAATTTC TAT GAAATT-TAGGCGGAGATGAATTTGTTA ATATTTGTTAAAATA TERM 6 2985 - 3043 + H 100 -18.1 -3.69068 | opp_overlap 2988 2992, overlap 2985 2988 2992 AATAAATCCATTTAT -TAACAAATTCATCTCCACCTATAATTTC TAT GAAATT-TAGGCGGAGATGAATTTGTTAA TATTTGTTAAAATAA TERM 7 2988 - 3039 + H 100 -21.4 -3.54382 | gap 1, opp_overlap 2988 2992, overlap 2985 2985 2992 AAATCCATTTATTAA CAAATTCATCTCCACCTATAATTTC TAT GAAATT-TAGGCGGAGATGAATTTG TTAATATTTGTTAAA TERM 8 3039 - 2988 - H 100 -23.6 -3.19656 | gap 1, opp_overlap 2985 2985 2988 2992, overlap 2992 AAATCCATTTATTAA CAAATTCATCTCCACCTATAATTTC TAT GAAATT-TAGGCGGAGATGAATTTG TTAATATTTGTTAAA TERM 9 2992 - 3035 + H 100 -16.4 -4.37337 | gap 1, opp_overlap 2988 2992, overlap 2988 2985 2985 CCATTTATTAACAAA TTCATCTCCACCTATAATTTC TAT GAAATT-TAGGCGGAGATGAA TTTGTTAATATTTGT TERM 10 3035 - 2992 - H 100 -18.6 -4.258 | gap 1, opp_overlap 2992 2988 2985 2985, overlap 2988 CCATTTATTAACAAA TTCATCTCCACCTATAATTTC TAT GAAATT-TAGGCGGAGATGAA TTTGTTAATATTTGT TERM 11 3906 - 3956 + H 100 -12.2 -4.64157 | opp_overlap 3951, overlap 3951 TGGTTGAGAACCTTT TAGTAGGTTATATTAATGTCCCTG GCT TAGGGTTATTAATAAAATCTACTA TTTTGTAGTTATTTC TERM 12 4530 - 4512 - g 86 -4.6 -5.91981 | opp_overlap 4522, overlap 4513 4522 AAAACTCAAAAAAAA GTTCAAAG AAT CTTTGAAA GATATTACAACTAAT TERM 13 4529 - 4513 - g 80 -8.1 -4.11528 | opp_overlap 4522, overlap 4512 4522 AAACTCAAAAAAAAG TTCAAAG AAT CTTTGAA AGATATTACAACTAA mlpA 4153 - 4662 + | lipoprotein TERM 14 4795 - 4822 + F 100 -13 -5.19212 | opp_overlap 4799 4802 TATTTTTGAATTTTA TTAAGAATCTCT AATT AGAGATTCTTAA TTTTTTGATGCTGCT TERM 15 4818 - 4799 - f 78 -9.4 -3.18681 | opp_overlap 4795, overlap 4802 TTTGAATTTTATTAA GAATCTCT AATT AGAGATTC TTAATTTTTTGATGC BRE_2006 4952 - 5638 + | hypothetical protein TERM 16 5796 - 5769 - g 76 -7.1 -4.371 | overlap 5772 TGTATCATACCAAAA TTACCAAAGAC TTTTAC GTCTTTGGTGA AAATAAAAAACAAAA TERM 17 5793 - 5772 - g 74 -8.8 -3.16603 | overlap 5769 ATCATACCAAAATTA CCAAAGAC TTTTAC GTCTTTGG TGAAAATAAAAAACA TERM 18 5824 - 5807 - g 78 -2.8 -5.79595 | GGTGAAAATAAAAAA CAAAAA AATAAA TTTTTG ATATGTATGAGAGAT ppap1_1 5642 - 6217 + | plasmid partitioning associated protein-1 TERM 19 6603 - 6591 - g 77 -7.7 -4.23853 | opp_overlap 6590 AATAATAGACACAAA CCCTA GTT TAGGG CATCTTTTAAATAAT pf32_1 6193 - 6945 + | PF32 plasmid partition protein pf49_1 6985 - 7557 + | PF49 plasmid partition protein TERM 20 8229 - 8243 + F 73 -5.8 -4.64766 | AAAGTTTGTCTTGAT TTTTAG GGT CTAAAA TTTTTCAGATATAAC vsp_1 8261 - 8842 + | vsp protein TERM 21 8900 - 8878 - T 100 -13.6 -4.87389 | opp_overlap 8878 TATTGGAAAAATAAA GCTAATAGCA CTA TGCTATTAGC TTTTGTTAGTATTTA TERM 22 8878 - 8900 + T 100 -13.6 -4.81163 | opp_overlap 8878 TATTGGAAAAATAAA GCTAATAGCA CTA TGCTATTAGC TTTTGTTAGTATTTA bdr_2 11002 - 10520 - | bdr proitein BRE_2015 12911 - 12372 - | family 115-like protein TERM 23 12994 - 12976 - R 74 -7.6 -4.00512 | overlap 12974 CTTTATAACAAAACA TTAAACTT TCC AAGTTTAA AAGGTTATTTTGAAA TERM 24 15299 - 15250 - R 100 -16.9 -5.1523 | overlap 15292 GTTATAATATAAAAA TTTAGAGCCTAATTAAACACTCT TTTT AGAATGCTTAATCAAGCTCTAAA AGCTAATTAAACGAT pf49_2 16121 - 15588 - | PF-49 plasmid partition protein pf32_2 16906 - 16163 - | PF32 plasmid partition protein TERM 25 16672 - 16685 + g 71 -2.5 -5.5604 | TTACTATTGATTCAT TAATA TTAA TATTA TTTTTTATTACTTCA ppap1_2 17442 - 16882 - | plasmid partitioning associated protein-1 TERM 26 17360 - 17379 + g 72 -6.6 -4.23207 | overlap 17368 CTACTATTATTTTCC TCTATTTT GATA AAAATAGA TTTATCTCCTTTTTC ppap2 18582 - 17452 - | plasmid partioning associated protein 2 TERM 27 20036 - 20000 - R 90 -5.3 -5.63517 | opp_overlap 20002, overlap 20001 20002 TTCTCAAATAAAAAA TTCTAACAAAAAGAATT GCA ACTTCTTTTTGTTAGTT TGTAGTAATATATTG TERM 28 20035 - 20001 - R 83 -8.8 -3.97026 | opp_overlap 20002, overlap 20000 20002 TCTCAAATAAAAAAT TCTAACAAAAAGAATT GCA ACTTCTTTTTGTTAGT TTGTAGTAATATATT TERM 29 20034 - 20002 - R 91 -12.3 -2.97131 | opp_overlap 20002, overlap 20001 20000 CTCAAATAAAAAATT CTAACAAAAAGAATT GCA ACTTCTTTTTGTTAG TTTGTAGTAATATAT TERM 30 20002 - 20034 + r 100 -12.3 -4.01184 | opp_overlap 20002 20001 20000 CTCAAATAAAAAATT CTAACAAAAAGAATT GCA ACTTCTTTTTGTTAG TTTGTAGTAATATAT bppC_2 20856 - 20104 - | BppC TERM 31 21122 - 21135 + r 100 -6.7 -6.0458 | opp_overlap 21124 CCATCTGTTTGCAAT GAGAG ATAT CTCTC TTTTTTTTAATTTAT TERM 32 21158 - 21176 + r 100 -9 -5.10516 | overlap 21170 TAATTTATCTTTCTG TGTTAACT TCA AGTTAACA TTTTGTTTACTTTTT TERM 33 21170 - 21186 + r 73 -3.7 -5.34208 | overlap 21158 CTGTGTTAACTTCAA GTTAACA TTT TGTTTAC TTTTTACTTTTTTTT BRE_2027 21707 - 21288 - | MlpL-like protein; lipoprotein TERM 34 21826 - 21799 - H 79 -9.3 -3.56273 | opp_overlap 21796 21799 21824, overlap 21800 TTGATTATTATATAA CTAGCAACTAC TAAATC GTAGTTGCTAA ATATTGATTTATCTT TERM 35 21825 - 21800 - H 82 -10.6 -2.73443 | opp_overlap 21799 21796 21824, overlap 21799 TGATTATTATATAAC TAGCAACTAC TAAATC GTAGTTGCTA AATATTGATTTATCT bdr_3 24197 - 24754 + | bdr proitein TERM 36 24976 - 24993 + T 86 -4.8 -5.64421 | opp_overlap 24976 AAGAATGTTGGCAAA GGGAGC AATGAA GCTCTC TTTTTTATTTGCAGT TERM 37 27859 - 27837 - T 100 -13.6 -4.81163 | opp_overlap 27837 TAAATACTAACAAAA GCTAATAGCA TAG TGCTATTAGC TTTATTTTTCCAATA TERM 38 27837 - 27859 + T 100 -13.6 -4.87389 | opp_overlap 27837 TAAATACTAACAAAA GCTAATAGCA TAG TGCTATTAGC TTTATTTTTCCAATA TERM 39 28750 - 28733 - T 100 -5.5 -5.95539 | CTGTAAATAAAAAAA GAGAACC TCAT GGCTCCC TTTACTAATATTCTT vlp-d_1 29780 - 28788 - | vlp protein, delta subfamily TERM 40 30324 - 30296 - R 100 -11.1 -5.9218 | opp_overlap 30296 GACACAATAAAAAAA GGATACTAAGAGC TTA ACTCCCAGTATCC TTTTACTTCACAATT TERM 41 30296 - 30324 + r 71 -6 -4.41895 | opp_overlap 30296 GACACAATAAAAAAA GGATACTAAGAG CTTAA CTCCCAGTATCC TTTTACTTCACAATT vlp-c 31412 - 30387 - | vlp protein, gamma subfamily bdr_4 31680 - 32270 + | bdr proitein TERM 42 32949 - 32935 - T 78 -2.9 -5.9663 | AAATATCAAAAAAAA TTCAA GATAG TTGAA AACACACAAATAAAA TERM 43 33012 - 32966 - T 100 -12.6 -5.4433 | ACACACAAATAAAAA GTGGATTTTGTTGATAAAATTA GAA TAAAATTACCAACAAAACCCAC TAAAGGTTATAAAAT pf32_3 34501 - 33740 - | PF32 plasmid partition protein TERM 44 33805 - 33829 + g 70 -2.9 -5.27476 | CTTCCTTAAAATTAG GTTCTTTCAAA TCA TTTGCAAAAAC TTTTATTTTGTTAGA ppap1_3 35052 - 34477 - | plasmid partitioning associated protein-1 BRE_2042 35808 - 35125 - | hypothetical protein TERM 45 35868 - 35882 + H 80 -4.4 -5.54907 | opp_overlap 35868 35877 35879 35880, overlap 35879 AGTTTTATTAAAAAG TAAATA CAA TATTTA TTTTTATTTTATAAA TERM 46 35879 - 35937 + H 76 -9.8 -2.86217 | gap 2, opp_overlap 35868 35877 35879 35880 35917, overlap 35868 35885 35898 AAAGTAAATACAATA T--TTATTTTTATTTTATAAATTTCTTT GTAAA AAAGAAATTTATAAAATAAAAATAAGGA GTTTAAGTGTTACTA TERM 47 35935 - 35879 - H 100 -17.4 -3.53929 | opp_overlap 35868 35879 35885 35898, overlap 35868 35877 35880 35917 AAAGTAAATACAATA TTTATTTTTATTTTATAAATTTCTTT GTAAA AAAGAAATTTATAAAATAAAAATAAG GAGTTTAAGTGTTAC TERM 48 35934 - 35880 - H 100 -20.9 -2.70731 | opp_overlap 35868 35879 35885 35898, overlap 35868 35877 35879 35917 AAGTAAATACAATAT TTATTTTTATTTTATAAATTTCTTT GTAAA AAAGAAATTTATAAAATAAAAATAA GGAGTTTAAGTGTTA TERM 49 36105 - 36076 - H 77 -5.3 -5.07053 | opp_overlap 36069 36075, overlap 36066 36063 AACTATTTTAAAAAA TTTTTTATTTTTT AAAT AAGAAATAAAAAA GTAGTATTAAAGAAA TERM 50 36151 - 36169 + H 83 -4.7 -5.60689 | TTTAGATATTTTCAT TTATATG CCTAT CATATAA TTTTTTCTTATATCA TERM 51 36779 - 36789 + H 87 -2.6 -6.28401 | opp_overlap 36779 TAAAGAATAAAGTTA TTTT AGT AAAA TTTTTTTGTTTTTTA vlp-a 36945 - 37919 + | vlp protein, alpha subfamily TERM 52 38050 - 38067 + F 100 -7 -5.95539 | opp_overlap 38050 38052 AAATATTAGTAGATA GAGAGC AATAAA GCTCTC TTTTTTTATTTGCAG vsp_2 38550 - 39194 + | vsp protein TERM 53 39298 - 39272 - f 76 -8.1 -3.724 | opp_overlap 39272 AAGTTATGAAGATAA GATACTTAGAG TTAAT CTCTTAGTATC TTTTGTTTTATTGTG TERM 54 39272 - 39298 + F 100 -8.1 -5.31091 | opp_overlap 39272 AAGTTATGAAGATAA GATACTTAGAG TTAAT CTCTTAGTATC TTTTGTTTTATTGTG vlp-d_2 39440 - 40534 + | vlp protein, delta subfamily TERM 55 40626 - 40644 + F 83 -3.8 -5.95539 | AAAATAATTAGTTAA GAGGGC TTCTTTT GCTCTC TTTTTTTATTTGCGG vsp_3 40852 - 41463 + | vsp protein TERM 56 41557 - 41577 + F 100 -9.1 -5.89659 | opp_overlap 41556 41557 TTAATAAATTTAAAG CTGAGAGTA TGG TACTCTTAG TTTTTGTTTTTTTAT TERM 57 42860 - 42877 + F 100 -7 -5.56264 | opp_overlap 42860, overlap 42865 AGAAATATTAGTGAA GAGAGC AATAAA GCTCTC TTTTTTGTATTTCCG vlp-d_3 42975 - 44087 + | vlp protein, delta subfamily TERM 58 44140 - 44160 + F 83 -4 -5.83822 | opp_overlap 44140 AAGAATGCTGATAAA GAGAGC ACTAATGAA GCTCTC TTTTTTTTGAGTGTA vsp_4 44365 - 44946 + | vsp protein SEQUENCE gi|203288465|ref|NC_011263.1| Borrelia recurrentis A1 plasmid pl6, complete sequence (length 6131) pf49 681 - 166 - | PF49 plasmid partition protein TERM 1 696 - 731 + r 100 -15.2 -4.48877 | opp_overlap 696 702 724, overlap 681 702 TTTCTGTTTCCTAAA CATAAATATTTGTAAA CTGG TTTACAAATATTTATG TTTTATAAATATTTA TERM 2 731 - 696 - R 100 -15.2 -3.53012 | opp_overlap 681 696 702, overlap 702 724 TTTCTGTTTCCTAAA CATAAATATTTGTAAA CTGG TTTACAAATATTTATG TTTTATAAATATTTA TERM 3 702 - 725 + r 85 -8.4 -4.51238 | opp_overlap 696 702 724, overlap 696 TTTCCTAAACATAAA TATTTGTAAA CTGG TTTACAAATA TTTATGTTTTATAAA TERM 4 725 - 702 - R 85 -8.4 -4.32857 | opp_overlap 702 696, overlap 696 724 TTTCCTAAACATAAA TATTTGTAAA CTGG TTTACAAATA TTTATGTTTTATAAA pf32 1505 - 744 - | PF32 plasmid partition protein TERM 5 907 - 925 + g 86 -6.2 -5.34632 | opp_overlap 907 AGCTGCTGTAAACTA TAAAAAAA TTC TTTTTTTA TTTTTCTATTTTCTT TERM 6 1625 - 1642 + H 71 -2.8 -5.52347 | TCCGATGTCCTTTGC CTTAAT TGCGAT ATTAAG TTTTTTAATTTTATT TERM 7 1952 - 1969 + H 79 -5.7 -5.03747 | opp_overlap 1947 1960, overlap 1947 1965 CTATAACCCATTTCT TTTGAAA ATTC TTTCAAA TTTTTTAAAGAATTT TERM 8 1970 - 1990 + H 71 -7.1 -3.86202 | opp_overlap 1960 1970 1983, overlap 1965 GAAAATTCTTTCAAA TTTTTTAAA GAA TTTAAAAAA TTTAATGTAATACGC BRE_7003 2242 - 2766 + | hypothetical protein