TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.659252 %AT, 1559620 nt, 8229 terms. Intergenic: 0.722783 %AT, H2T: 164158 nt, 1314 terms; T2T: 31403 nt, 715 terms; H2H: 49924 nt, 954 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|118474057|ref|NC_008599.1| Campylobacter fetus subsp. fetus 82-40, complete genome (length 1773615) dnaA 1 - 1311 + | chromosomal replication initiation protein TERM 1 1435 - 1423 - f 93 -3.5 -6.20267 | CTAAAAATAAAAAAA TAAAT TAA ATTTA AAAGGCAAAAAAAAT dnaN 1449 - 2519 + | DNA polymerase III subunit beta TERM 2 3362 - 3348 - g 70 -2.1 -5.23765 | overlap 3349 TAAACAATATAAAAA CTCCA GATGG TGGAA CTCATGAAGCAGGTT TERM 3 3432 - 3416 - g 71 -8.7 -3.08869 | ATTACAAATTATATA GCTGCAA ATG CTGCAGC TCGTGAGAAAGATAC TERM 4 3552 - 3542 - g 76 -6.8 -4.64464 | opp_overlap 3542 CAAACTAAAGGAAAA CTCG GCT CGAG TTATGTAAAACCTAT TERM 5 3957 - 3942 - g 77 -9 -3.66574 | TAAAAAATATGATAA CCGCAT TTGG ATGCGG AATTGGTGAAGAGTT gyrB 2528 - 4849 + | DNA gyrase subunit B TERM 6 4838 - 4826 - f 70 -6.3 -4.19704 | CAAGCTCATGCAAAA GATGT AAA ACATC TGGACGTTTAATGCT TERM 7 4891 - 4870 - g 70 -4.4 -4.76041 | opp_overlap 4870 TATAGCCAGCAAAAA GAGCGAAG TAACCG CTTTGCTC TTGCTCTTAGGATAG TERM 8 5113 - 5099 - g 70 -4.4 -4.71223 | TTACAAGAGATAAAA TTATAA AAA TTATAA ATAAAAGCATTAAAA TERM 9 5159 - 5142 - g 74 -2.1 -5.4477 | gap 1, opp_overlap 5145, overlap 5143 5145 AAACGGTGAAAAAAA GTATATCA TTA TGATAT-C TATAAAAAATTTAAA CFF8240_0004 4849 - 6231 + | diguanylate cyclase/phosphodiesterase, putative queF 6234 - 6674 + | 7-cyano-7-deazaguanine reductase CFF8240_0006 6684 - 7904 + | hydrolase TERM 10 8434 - 8480 + G 80 -4.8 -5.34055 | gap 1, opp_overlap 8436 8460, overlap 8419 8437 8438 CTCTTTTGCAACAAA GAGTTTATGAGTATTTCTTAA GCGAAG TTAGGAGATACTCAT-AACTA TTTTTTCATATTTAT TERM 11 8437 - 8478 + G 81 -7.6 -4.27753 | opp_overlap 8436 8460, overlap 8434 8438 TTTTGCAACAAAGAG TTTATGAGTATTTCTTAA GCGAAG TTAGGAGATACTCATAAC TATTTTTTCATATTT TERM 12 8438 - 8477 + G 83 -11.1 -3.14212 | opp_overlap 8436 8460, overlap 8437 8434 TTTGCAACAAAGAGT TTATGAGTATTTCTTAA GCGAAG TTAGGAGATACTCATAA CTATTTTTTCATATT CFF8240_0007 8055 - 8477 + | hypothetical protein CFF8240_0008 10118 - 8478 - | flagellar hook protein TERM 13 8511 - 8531 + g 89 -9.1 -4.19953 | CGCTTTTTGTATCAT TTGATCACT TGT AGTGATCGA TTTTGCACTTGCGTC TERM 14 9087 - 9077 - G 76 -4 -5.32882 | TAGTAGGAGAAAAAA TAGT AGC ACTA ACATTCCATGCTGTT flgD 10906 - 10115 - | flagellar basal body rod modification protein CFF8240_0010 12565 - 10964 - | hypothetical protein TERM 15 12515 - 12534 + g 77 -8.6 -3.60323 | overlap 12514 ATCACTCGGTTTTGT CTGCATCG TACT TGATGCAG TATTGTTTAGTAATG TERM 16 13578 - 13591 + G 74 -3.1 -5.2422 | ATTCTCCTTATATTT TGCTT CCGA AGGCA TTTTTTGCTATGCTT CFF8240_0011 12725 - 13927 + | Bcr/CflA subfamily drug resistance transporter CFF8240_0012 13920 - 14054 + | hypothetical protein TERM 17 14257 - 14244 - gf 77 -9.5 -2.80622 | opp_overlap 14242 AGATACTCCAGGACA CGCCG ATTT CGGCG GTGAAGTTGAGCGTG TERM 18 15397 - 15411 + GF 72 -5 -4.67234 | ACCAAAGGCGAGGGT GTTATG AAC CATAGC TTTTTGGAATTCCGT typA 14014 - 15822 + | GTP-binding protein TypA/BipA CFF8240_0014 15822 - 16505 + | hypothetical protein CFF8240_0015 17607 - 16546 - | putative helix-turn-helix containsing protein rnhB 18184 - 17615 - | ribonuclease HII CFF8240_0017 19154 - 18177 - | integral membrane protein TERM 19 19216 - 19238 + H 77 -9.4 -2.87273 | opp_overlap 19220 19230 19233 19235, overlap 19215 19213 19233 19235 TATTATAATGTTTGA TTAATGATAT TAA ATATCATTAA ATATTTTAATGTATA CFF8240_0018 19281 - 20240 + | ferric cations import ATP-binding protein FbpC 1 CFF8240_0019 20879 - 20250 - | Hsp12 variant C CFF8240_0020 21945 - 21001 - | cation efflux family protein TERM 20 21416 - 21398 - G 83 -8.2 -4.28069 | ACAGAACTTAATAAA TCGCTCAT CAT ATGAGCAA AACTTGATTTGATAT nrdD 22265 - 24334 + | anaerobic ribonucleoside triphosphate reductase CFF8240_0022 24547 - 25911 + | putative nicotinate phosphoribosyltransferase CFF8240_0023 25922 - 26083 + | hypothetical protein TERM 21 26159 - 26179 + G 78 -7.5 -4.24342 | CTATAGTGTGGTTTG CGAAGTGCA ATA TGCGCTGCG TTTATTGCTACAACA TERM 22 26710 - 26690 - g 80 -4.7 -5.2197 | opp_overlap 26707, overlap 26691 26695 TACAAAAACCAAAAA CCAAATTCG ATC CGAAGTTGA TAAAATCAAATTTAA CFF8240_0024 26077 - 26748 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 23 26789 - 26764 - T 73 -8.4 -3.13504 | opp_overlap 26762, overlap 26762 26761 TTTGGATTAAAATTA GGTAAAAGCC GTTTTT AGCTTTTACC GACTGTTTTATCTAA CFF8240_0025 27345 - 26797 - | cytolethal distending toxin A/C family protein CFF8240_0026 28145 - 27345 - | cytolethal distending toxin CFF8240_0027 28975 - 28154 - | cytolethal distending toxin A TERM 24 28626 - 28600 - G 70 -8 -3.28864 | overlap 28599 TTATCACCATAAAAT CGCTTGTTCTAT CAA ATAGATCAGGCG GGATACCTTGTAGAC CFF8240_0028 29839 - 29351 - | putative transformation system protein nrdF 30007 - 31029 + | ribonucleotide-diphosphate reductase subunit beta CFF8240_0030 31019 - 31681 + | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase TERM 25 31736 - 31716 - f 75 -8.4 -3.37071 | AAATTTTATGTATAA TTTCCCTT TGTTG AAGGGAAA AAATGGATAGTTTAG pcm 31739 - 32368 + | protein-L-isoaspartate O-methyltransferase CFF8240_0032 32443 - 33093 + | superoxide dismutase(Fe) TERM 26 33158 - 33137 - f 81 -10.2 -3.07113 | opp_overlap 33137 AATTTATAAATTATA GCAGAACC GGCTTT GGTTCTGC TTTTTTAATCTATTA TERM 27 33137 - 33158 + F 100 -10.9 -5.27399 | opp_overlap 33137 AATTTATAAATTATA GCAGAACCG GCTT TGGTTCTGC TTTTTTAATCTATTA TERM 28 33526 - 33510 - f 72 -6.5 -4.371 | opp_overlap 33510 33509, overlap 33511 TTGATTATATCAAAA GGTCACG TGT CGTGACA AGTTATTTTTAAAGG TERM 29 33525 - 33511 - f 83 -10 -3.21778 | opp_overlap 33510 33509, overlap 33510 TGATTATATCAAAAG GTCACG TGT CGTGAC AAGTTATTTTTAAAG rpsJ 33549 - 33860 + | 30S ribosomal protein S10 rplC 33879 - 34457 + | 50S ribosomal protein L3 TERM 30 34872 - 34862 - g 74 -5.4 -4.66938 | opp_overlap 34862 AGCGGCAAGACAAAA GATG CAG CATC TATCATCAATAAACT rplD 34454 - 35068 + | 50S ribosomal protein L4 rplW 35071 - 35352 + | 50S ribosomal protein L23 rplB 35354 - 36184 + | 50S ribosomal protein L2 rpsS 36187 - 36468 + | 30S ribosomal protein S19 rplV 36478 - 36810 + | 50S ribosomal protein L22 rpsC 36812 - 37510 + | 30S ribosomal protein S3 rplP 37513 - 37938 + | 50S ribosomal protein L16 rpmC 37925 - 38110 + | 50S ribosomal protein L29 TERM 31 38342 - 38355 + G 79 -8.1 -4.07568 | opp_overlap 38353 TGCTAGAAAAAGCTT CCGCT TACA AGCGG TTTTGAAAACAGGAG rpsQ 38121 - 38378 + | 30S ribosomal protein S17 TERM 32 38664 - 38651 - g 79 -3.7 -5.55769 | opp_overlap 38651 CTTGATAATAAAAAA GAGCC AGTA GGCAC TCGTATATTTGGCCC rplN 38378 - 38746 + | 50S ribosomal protein L14 TERM 33 38900 - 38886 - g 71 -5.6 -4.58283 | overlap 38888 TAAGGTTGCTAAAAA GGCGGT TAA ACCGAC CGAGAAAAATCCAAA rplX 38746 - 38979 + | 50S ribosomal protein L24 rplE 38982 - 39524 + | 50S ribosomal protein L5 rpsN 39526 - 39711 + | 30S ribosomal protein S14 rpsH 39722 - 40117 + | 30S ribosomal protein S8 rplF 40239 - 40775 + | 50S ribosomal protein L6 rplR 40785 - 41141 + | 50S ribosomal protein L18 rpsE 41156 - 41599 + | 30S ribosomal protein S5 rplO 41609 - 42010 + | 50S ribosomal protein L15 secY 42010 - 43272 + | preprotein translocase subunit SecY TERM 34 43427 - 43443 + G 80 -9.4 -3.54935 | opp_overlap 43426 43425 43422 GATATGATAAGAAGT GCCGGT GCAAA ACCGGC TTTCAAAGGGCTTTA map 43274 - 44032 + | methionine aminopeptidase TERM 35 44022 - 44048 + F 71 -3.8 -5.15381 | opp_overlap 44029, overlap 44017 44024 AAGCAGAGATTTTAA GTCAAATTTAAA GTT TTTAACTTTGTC TTTTTTGACTATGTT infA 44281 - 44499 + | translation initiation factor IF-1 rpsM 44776 - 45144 + | 30S ribosomal protein S13 rpsK 45154 - 45546 + | 30S ribosomal protein S11 rpsD 45574 - 46200 + | 30S ribosomal protein S4 TERM 36 46510 - 46473 - g 82 -5.2 -5.24449 | overlap 46477 TATAAATTTAAAAAA CTT-ACGTTTTAAGCTCA AAAA TGA-CTCAAAACGTGAAG TCATAGAGTATAGCT TERM 37 47110 - 47098 - g 71 -3.4 -5.10497 | AATTTAGGTAAAAAA TCTC TTGAT GAGA TAAAAGCTGTAATGG rpoA 46213 - 47211 + | DNA-directed RNA polymerase subunit alpha TERM 38 47320 - 47298 - g 71 -5.7 -4.56775 | gap 1 AGCTTTGCTTAAAAA CCTT-ACGAT AGCT ATCGTTAAGG CTGGTAAGATAGAAA rplQ 47230 - 47586 + | 50S ribosomal protein L17 TERM 39 47598 - 47625 + F 100 -11.4 -4.87318 | opp_overlap 47624, overlap 47594 47600 ATAACTAGTAGTCTT GTTTTGCCAAGA ATTT TCTTGGCAAACC TTTTTAAATTTTAAA TERM 40 47600 - 47623 + F 100 -12.6 -2.69699 | overlap 47594 47598 AACTAGTAGTCTTGT TTTGCCAAGA ATTT TCTTGGCAAA CCTTTTTAAATTTTA CFF8240_0061 47811 - 48077 + | NifU family protein CFF8240_0062 48067 - 48615 + | hypothetical protein murE 48596 - 49885 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase panD 49905 - 50252 + | aspartate alpha-decarboxylase TERM 41 50313 - 50365 + F 87 -9.5 -3.91412 | opp_overlap 50328, overlap 50362 ATACTATAAGTTCTA CTTGGGCTATTTAAATTTAAAAATA ATC TAGTTTTAAATTTGGATCGCCTAGG TTTATACCCTATACT CFF8240_0065 50740 - 52386 + | methyl-accepting chemotaxis protein CFF8240_0066 52452 - 52763 + | hypothetical protein TERM 42 53749 - 53731 - g 76 -3.8 -5.29782 | overlap 53734 CAGATTGATAAAAAA CAACTGAA TTC CTCAGCCG ATATAGAAAAAATAA TERM 43 53746 - 53734 - g 70 -4.1 -4.73105 | overlap 53731 ATTGATAAAAAACAA CTGAA TTC CTCAG CCGATATAGAAAAAA CFF8240_0067 52765 - 53841 + | PDZ domain-containing protein CFF8240_0068 53838 - 54671 + | geranyltranstransferase TERM 44 55896 - 55909 + G 74 -2.4 -5.56264 | overlap 55892 ATGGACTATTTTTAC CGTT TTCGGC AACG TTTTTTATATTTAGC TERM 45 55954 - 55974 + G 85 -4.1 -5.71712 | AAGTGCTAGAATAGC TGCTTTA ATGGGTA TAAAGCA TTTTTTTGTCTGGAC tkt 54677 - 56578 + | transketolase TERM 46 56588 - 56602 + F 78 -5.7 -4.95211 | opp_overlap 56588, overlap 56583 CTTTAAATTTAAAAA GAGGA TTCAC TCCTC TTTTGTTACTTTTTT TERM 47 56602 - 56588 - f 75 -5.7 -4.81249 | opp_overlap 56588 56583 CTTTAAATTTAAAAA GAGGA TTCAC TCCTC TTTTGTTACTTTTTT TERM 48 57762 - 57752 - g 71 -5.4 -4.60255 | AGAACGTGCGAAAAA TAGC GGT GCTA AGGTATTAACCGGAG CFF8240_0070 56727 - 58175 + | aldehyde dehydrogenase A TERM 49 58244 - 58211 - T 70 -6.9 -3.89938 | gap 1, opp_overlap 58211, overlap 58214 58217 58219 ATAATTAAATTTAAA TAATTATAGCCGGAAA ATA TATCCGGCTA-AACTA AACTTATTTTGTACT TERM 50 58239 - 58217 - T 84 -10.6 -3.05503 | opp_overlap 58211, overlap 58214 58211 58219 AAATTTAAATAATTA TAGCCGGAAA ATA TATCCGGCTA AACTAAACTTATTTT TERM 51 58237 - 58219 - T 73 -8.8 -3.06911 | opp_overlap 58211, overlap 58217 58214 58211 ATTTAAATAATTATA GCCGGAAA ATA TATCCGGC TAAACTAAACTTATT CFF8240_0071 58486 - 58286 - | hypothetical protein TERM 52 58368 - 58334 - G 100 -12.2 -5.00884 | opp_overlap 58334 AGCTTCTTTAAAAAA CTCAGCCCTAGAAAGA GGT TCTTTCCCGGGGTGAG TTTTGTTAAAATGTT TERM 53 58334 - 58368 + g 100 -10 -4.6759 | opp_overlap 58334 AGCTTCTTTAAAAAA CTCAGCCCTAGAAAGA GGT TCTTTCCCGGGGTGAG TTTTGTTAAAATGTT CFF8240_0072 60548 - 58470 - | carbon starvation protein A thiS 60741 - 60941 + | thiamine biosynthesis protein ThiS TERM 54 61262 - 61249 - g 85 -4.5 -5.64274 | GTATTTATAAAAAAA GGAGA AATG CCTCC TAAAGAGTTTTTAGA thiF 61168 - 61881 + | thiamine biosynthesis protein ThiF thiG 61874 - 62635 + | thiazole synthase TERM 55 63453 - 63470 + G 73 -8.5 -3.16564 | overlap 63447 CAAAGTATCCTCATG CTGAGAT TTCT ATCTCAG TTCCTAGACTCAGAC thiH 62657 - 63817 + | thiamine biosynthesis protein ThiH CFF8240_0077 64484 - 63867 - | hypothetical protein galU 64560 - 65390 + | UTP-glucose-1-phosphate uridylyltransferase TERM 56 66038 - 66025 - g 77 -5.3 -4.87786 | overlap 66033 TTAATTTTACAAAAA GCATA TCAC TATGC AACGCATAAAAGCGC pgi 65377 - 66582 + | glucose-6-phosphate isomerase CFF8240_0080 66787 - 67224 + | starvation-inducible DNA-binding protein Dps TERM 57 67275 - 67260 - T 90 -10.4 -3.83502 | opp_overlap 67260 TACTTTGATATGAAA GGCGGA TAAA TCCGCC TTTTTTTATTTATTT TERM 58 67260 - 67275 + T 100 -10.4 -6.11392 | opp_overlap 67260 TACTTTGATATGAAA GGCGGA TAAA TCCGCC TTTTTTTATTTATTT CFF8240_0081 67851 - 67285 - | YceI TERM 59 67956 - 67968 + r 77 -4.9 -5.22039 | ATTTTTTAAATTTCA TTAAC TAC GTTAA TTTTTTCAATTTAAA CFF8240_0082 68394 - 68014 - | HIT family protein bioD 69002 - 68391 - | dethiobiotin synthase TERM 60 68643 - 68625 - G 71 -9 -3.07013 | TATGCTGCCAAGATA GTTTTTAG AAA CTAAAAAC GTAGGAAGATTTGCT TERM 61 68956 - 68941 - G 83 -8.2 -4.28791 | opp_overlap 68941 AACGCATAACACAAA GCCGCG CTTA CGCAGC TTTTTCCGGCATCCG TERM 62 68941 - 68956 + g 74 -6 -4.58395 | opp_overlap 68941 AACGCATAACACAAA GCCGCG CTTA CGCAGC TTTTTCCGGCATCCG CFF8240_0084 69688 - 68999 - | putative biotin synthesis protein CFF8240_0085 70292 - 69678 - | hypothetical protein CFF8240_0086 71379 - 70273 - | 8-amino-7-oxononanoate synthase TERM 63 71798 - 71830 + G 70 -4.1 -4.77036 | opp_overlap 71799 71801 71802, overlap 71799 TAAAGATCGCTATAA ACAGGGCTTCTTTGA TCA TTAAAGAAGCCGGGC TTTTTCATCGTCAAC TERM 64 71826 - 71802 - g 75 -10.1 -2.71422 | opp_overlap 71799 71798, overlap 71801 71799 GATCGCTATAAACAG GGCTTCTTTGA TCA TTAAAGAAGCC GGGCTTTTTCATCGT CFF8240_0087 71548 - 71970 + | hypothetical protein thiL 71949 - 72767 + | thiamine monophosphate kinase truD 72745 - 73878 + | tRNA pseudouridine synthase D TERM 65 73900 - 73882 - T 100 -10.3 -4.87626 | TTTGAAGAGTAAAAA GTGGGAG TTTTT CTCCCAC AAGTATTCACATACT TERM 66 74342 - 74362 + T 73 -7.7 -3.86814 | opp_overlap 74342 74344 74359, overlap 74334 74334 74340 74359 ATCGCACCTACAAAG TAGCTTTTA GTT TAGAAGCTA TATTTTCTAGCTTTT CFF8240_0090 74538 - 74353 - | hypothetical protein fliS 74941 - 74552 - | flagellar protein FliS CFF8240_0092 76775 - 74952 - | flagellar capping protein TERM 67 75221 - 75241 + g 77 -6.2 -4.65933 | ATCCTCCGGTAACTT CTGAGCTT CCTTT AAGTTCAG TTTCTTTTAAACCTA TERM 68 76558 - 76580 + g 73 -9.3 -2.80939 | opp_overlap 76554, overlap 76557 76554 CGTTTTAAGTAGCTA GTATCATCA GTAAG TGATGATAC GTTGCTTTTAAAATT TERM 69 76653 - 76677 + g 89 -7.3 -5.37043 | overlap 76664 76666 CAAATTTGTTTGAAT TTTAGTATCTA TCG TTGATACTAAA TTTTTTGTATCAACT CFF8240_0093 77159 - 76779 - | flagellar protein FlaG CFF8240_0094 77281 - 77628 + | hypothetical protein CFF8240_0095 77612 - 78193 + | putative methyltransferase TERM 70 79286 - 79272 - g 74 -9.2 -3.03505 | overlap 79269 AATTTAAAAAGAGCA GGCGCG ATA CACGCC GGAGTGGAGATAATA flgI 78255 - 79304 + | flagellar basal body P-ring protein CFF8240_0097 79305 - 79604 + | hypothetical protein CFF8240_0098 79661 - 79864 + | hypothetical protein TERM 71 80078 - 80064 - g 84 -5.8 -5.28983 | overlap 80077 TTGAAAATACAAAAA CATTAT TAG ATAATG AACTAGTAAAACTAG CFF8240_0099 79904 - 80338 + | hypothetical protein TERM 72 81445 - 81425 - g 75 -6.9 -4.12198 | CACAACTCTTCAAAA CTTTGATCA AAA TGTTCAAAG CGGTAATTTTGATGT flgK 80340 - 82193 + | flagellar hook-associated protein FlgK CFF8240_0101 82196 - 82972 + | hypothetical protein TERM 73 83719 - 83705 - g 76 -4.4 -5.10767 | TAGCGAAGAGAAAAA TTTAAA AGA TTTAAA AAACGCTTTAAGTGG TERM 74 84390 - 84375 - g 77 -6.2 -4.8048 | CTTTTAGAGCAAAAA GTACTA TCTT TAGTAC AAAAGTTAAAGGCAA CFF8240_0102 83046 - 84413 + | phosphomannomutase/phosphoglucomutase CFF8240_0103 84410 - 85744 + | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase CFF8240_0104 85744 - 86415 + | ExsB protein TERM 75 86789 - 86778 - g 85 -4.4 -5.75342 | opp_overlap 86778 TTGGCTGAAAAAAAA GCAT TTTT ATGC TTTTGTGACGAAACG gltX 86508 - 87797 + | glutamyl-tRNA synthetase CFF8240_0106 87794 - 88093 + | yggt family protein TERM 76 88102 - 88116 + F 86 -5.7 -5.47218 | AATTTAGTATATTTA CAGCT TTTAT AGCTG TTTTTTTGGATGCCG TERM 77 89135 - 89119 - g 71 -6.6 -4.2558 | opp_overlap 89118 89114 GATTTTTTACTAAAA GTACTC TTGGC GAGTAC AGTTATATAATGGAA CFF8240_0107 88122 - 89744 + | soluble lytic murein transglycosylase, putative TERM 78 89749 - 89761 + F 76 -4.1 -5.40072 | opp_overlap 89741, overlap 89741 89751 CTCAAAACTAAGATT TAGTG TGT CGCTA TTTTTTTGCGGCGCA TERM 79 90560 - 90570 + G 74 -3.2 -5.30686 | opp_overlap 90556, overlap 90556 GTGTGCTAAAAGAAG CGTA AGC TGCG TTTTTTGTGAATATT CFF8240_0108 90318 - 90635 + | hypothetical protein TERM 80 90649 - 90659 + G 70 -2.4 -5.28826 | GATTTCTAAATTCAG CGGC TTA GACG TTTTTTATGAAATTT TERM 81 91185 - 91171 - g 78 -7.2 -4.44448 | ACTAGCTGAAATAAA TTTTGC TCA GCAAAA AAGCAGAGATATAGG TERM 82 91291 - 91267 - g 72 -2.7 -5.24647 | AGATATAAAACAAAA TGGAGCTAGAC TGA GGCTCGTTCCA TATAAAATTTGTAAT CFF8240_0109 90632 - 91330 + | hypothetical protein CFF8240_0110 91330 - 91818 + | flavodoxin FldA TERM 83 91849 - 91868 + F 81 -8.5 -4.25859 | overlap 91847 CATTAACTTCTGCTA GCCGCTC ATTCTA GGGCGGC TTATTTTAAATTCAA luxS 91927 - 92427 + | S-ribosylhomocysteinase TERM 84 92437 - 92490 + T 72 -6.4 -4.43501 | gap 2, opp_overlap 92456, overlap 92436 ATTTAGTTTCTCATT GCAGAG-TGCGTTATAGATA-TAAAT TTAT ATTTAATATTTTTATCGCATCTCTGC TTTTATAAATACCTT ung 93208 - 92510 - | uracil-DNA glycosylase TERM 85 92621 - 92609 - G 71 -3.3 -5.09225 | ACGTGAGCCAAAAAA TGCTC CAC GTGCA AGCGGACTCGGGTGA TERM 86 93244 - 93224 - R 100 -12.7 -4.35926 | opp_overlap 93221 93224 AGTGTAAATTTAAAA TTGAGTCCA AGT TGGACTCAA TGATTATAGAGCTTT TERM 87 93224 - 93244 + r 100 -12.7 -2.84015 | opp_overlap 93224, overlap 93221 AGTGTAAATTTAAAA TTGAGTCCA AGT TGGACTCAA TGATTATAGAGCTTT rplT 93601 - 93248 - | 50S ribosomal protein L20 rpmI 93879 - 93688 - | 50S ribosomal protein L35 CFF8240_0115 94054 - 95061 + | iron ABC transporter, periplasmic iron-binding protein TERM 88 95081 - 95098 + G 73 -9.1 -2.95938 | opp_overlap 95080, overlap 95077 AAATACTTAAATTAG GGGCGAT TTTT GTCGCCC TAGTTATCGTTTTTC CFF8240_0116 95062 - 96618 + | iron ABC transporter, permease protein CFF8240_0117 98093 - 96645 - | RND efflux system, outer membrane lipoprotein CmeC TERM 89 96691 - 96674 - G 93 -7 -5.71983 | opp_overlap 96663 96660 96674, overlap 96663 96660 TCAAGCAGAAAAAAA CTGCTC GTTTTT GAGCAG TTTTAGGGTTTCCTA TERM 90 96674 - 96691 + g 78 -7.7 -4.25074 | opp_overlap 96663 96660 96674, overlap 96663 96660 TCAAGCAGAAAAAAA CTGCTCG TTTT TGAGCAG TTTTAGGGTTTCCTA TERM 91 96853 - 96843 - G 71 -5.4 -4.62069 | opp_overlap 96843 TTGCGAGTCTAAAAA CTCA AGA TGAG TGCTATATCCATCAT TERM 92 97728 - 97746 + g 71 -6.8 -4.27001 | CTCGTAGCTAAGAGC CGTATTTA GGC TAAATGCG TTATATTTTTTATTA TERM 93 97783 - 97794 + g 88 -7.2 -4.93547 | CCCATGTATGTTTCA CCGC TTGA GCGG TTTTTGGTTGCTTCA CFF8240_0118 101232 - 98086 - | transmembrane efflux protein TERM 94 99399 - 99421 + g 74 -3.3 -5.22039 | TGCCCGCCAACATAT CGTATCCTG CAAGT CCGGTTACG TTTTTTACGTTTGGA CFF8240_0119 102353 - 101232 - | CmeA TERM 95 101655 - 101674 + g 84 -6.4 -5.02476 | GAGCGAGTTTAATTG CTCCCACT CTTT AGTGCGAG TTTTTTGAGCGATAT TERM 96 102257 - 102275 + g 82 -3 -5.60689 | opp_overlap 102236, overlap 102236 102260 CTGGCATAGGCGGTA TCTGTTGC TGG GCGGCTGA TTTTTTATTATCTGA CFF8240_0120 103112 - 102483 - | transcription regulator protein ccoG 104508 - 103105 - | cytochrome c oxidase accessory protein CcoG TERM 97 104072 - 104060 - G 74 -3.4 -5.38321 | AAATACCATAAAAAA TTGC TTGCC GCAA CTAGGGATAAACATG rpsU 104666 - 104878 + | 30S ribosomal protein S21 TERM 98 104905 - 104884 - T 73 -8.7 -3.10545 | opp_overlap 104886, overlap 104881 104886 TAGACTCTAAAACCA TAGCCGGAA GCTT TTCCGGCTT TTTTCTCTAAATTCT TERM 99 104886 - 104903 + T 100 -11.3 -5.38951 | opp_overlap 104884 104881 104886 GACTCTAAAACCATA GCCGGAA GCTT TTCCGGC TTTTTTCTCTAAATT TERM 100 104903 - 104886 - T 91 -11.3 -3.10537 | opp_overlap 104886, overlap 104884 104881 GACTCTAAAACCATA GCCGGAA GCTT TTCCGGC TTTTTTCTCTAAATT CFF8240_0123 105449 - 104985 - | hypothetical protein CFF8240_0124 105793 - 105452 - | hypothetical protein TERM 101 105616 - 105627 + g 70 -4.4 -4.6759 | TGACGTATTCATCAC TGCT ATCA AGCA TTTTATTCCACTGTT CFF8240_0125 106605 - 105790 - | hydrogenase-Ni,Fe-hydrogenase III small subunit TERM 102 106455 - 106435 - G 73 -7.5 -3.85165 | overlap 106429 106436 TAGTTTAAATCCAAA TCGCTCTGG ATC CCAAAGCGG ACTAAGAGCGGCAAA TERM 103 106454 - 106436 - G 81 -11 -2.90617 | overlap 106429 106435 AGTTTAAATCCAAAT CGCTCTGG ATC CCAAAGCG GACTAAGAGCGGCAA CFF8240_0126 107135 - 106605 - | formate hydrogenlyase complex iron-sulfur subunit CFF8240_0127 108880 - 107132 - | hydrogenase-4 component G TERM 104 107789 - 107799 + g 82 -5.4 -5.28826 | CCAAATTTCATCTAG TTGG GTG CCAA TTTTTTCTAAGATTT CFF8240_0128 110355 - 108880 - | hydrogenase-4 component F CFF8240_0130 110189 - 110362 + | hypothetical protein hyfE 110994 - 110359 - | hydrogenase 4 membrane subunit TERM 105 110833 - 110821 - G 74 -3.3 -5.25803 | overlap 110822 AACTTTTATAAAAAA TGCGA TTA TCGCC CATGAAAACAGTTCA CFF8240_0131 111916 - 110996 - | hydrogenase-4 component C CFF8240_0132 113869 - 111917 - | hydrogenase 4 membrane subunit TERM 106 113225 - 113213 - G 71 -7.7 -3.63627 | opp_overlap 113213 113212 TGCCCATACGTGAAA CGGAA ACA TTCCG ATTTTGCTGCCAAAT TERM 107 113660 - 113648 - G 100 -9.1 -5.50313 | opp_overlap 113648 113647 GATAAAACTAAAAAA TCCGC TAA GCGGA GTTATAATAAAATGT TERM 108 113648 - 113660 + g 72 -9.1 -2.64925 | opp_overlap 113648, overlap 113647 GATAAAACTAAAAAA TCCGC TAA GCGGA GTTATAATAAAATGT CFF8240_0133 114497 - 113862 - | hydrogenase-3 small subunit TERM 109 113897 - 113909 + g 76 -4.1 -5.20328 | overlap 113898 GCTGCACTTCCCCGG TCTCT TTT AGAGG TTTGTTTTTTTGCGC TERM 110 114940 - 114928 - H 75 -3.5 -5.39721 | TTATTATATAAAAAA TAATT TAA AATTA TTAAAATATATAAAA CFF8240_0134 115037 - 116647 + | phenylalanine and histidine ammonia-lyase TERM 111 116757 - 116772 + G 100 -10.4 -4.57569 | opp_overlap 116754 116757 AAGACGGTAAATTTA GCGGAG ATAT CTCCGC TTTTTCAGAAACTCG TERM 112 116772 - 116757 - g 78 -10.4 -2.66098 | opp_overlap 116757, overlap 116754 AAGACGGTAAATTTA GCGGAG ATAT CTCCGC TTTTTCAGAAACTCG TERM 113 117294 - 117278 - g 73 -8 -3.64703 | GGGCTTGGATTTAAA GCGTAC GGTTT GTACGC GGATGAGGTATTTTC TERM 114 117428 - 117406 - g 71 -3.4 -5.1244 | CGACGAAGATAAAAA CAAAGACGAT GGT AGCGTTTTTG AAGGATTACTCTATG CFF8240_0135 116660 - 117826 + | hypothetical protein CFF8240_0136 117836 - 119389 + | flavocytochrome c flavin subunit CFF8240_0137 119383 - 119775 + | fumarate reductase flavoprotein subunit CFF8240_0138 119785 - 120357 + | putative tetraheme cytochrome c TERM 115 120447 - 120493 + G 82 -9.6 -3.6543 | opp_overlap 120452 120453, overlap 120444 ATAGGAAATTATTAC CTAAATCGCTCATTTGTGAAAG AAG TTCTCACAAATGAGCAGCTTAG TATTTTAAAAAATTC TERM 116 120488 - 120452 - g 82 -9.6 -3.70438 | opp_overlap 120447 120444, overlap 120453 AAATTATTACCTAAA TCGCTCATTTGTGAAA GAAGT TCTCACAAATGAGCAG CTTAGTATTTTAAAA TERM 117 120487 - 120453 - g 87 -13.1 -2.8154 | opp_overlap 120447 120444, overlap 120452 AATTATTACCTAAAT CGCTCATTTGTGAAA GAAGT TCTCACAAATGAGCA GCTTAGTATTTTAAA TERM 118 121077 - 121061 - g 74 -6.7 -4.37711 | overlap 121073 CCATGAAACGCAAAA TGAAATT CTA AATTTCA AACCGCTTGAAAACT TERM 119 121627 - 121617 - g 83 -8.2 -4.371 | GTTACCATAGCAAAA GGCG TTA CGCC GATGTGTAAAAATTA CFF8240_0139 120366 - 121985 + | sensor kinase of two-component regulatory system, putative TERM 120 122107 - 122094 - g 75 -8.1 -3.76885 | TTGCAAAAAAATAGA CGTCG CAAG CGACG GGCTTGAAGGATTTG CFF8240_0140 121975 - 122664 + | two component transcriptional regulator TERM 121 122878 - 122857 - f 72 -6.5 -4.43877 | opp_overlap 122857 122858, overlap 122858 GAACTCTGAAAGAAA CCGCCCACT TTTC AGTGAGCGC TTTACAAAAAGGAGG TERM 122 122877 - 122858 - f 83 -10 -3.25603 | opp_overlap 122858 122857, overlap 122857 AACTCTGAAAGAAAC CGCCCACT TTTC AGTGAGCG CTTTACAAAAAGGAG moaC 123075 - 123551 + | molybdenum cofactor biosynthesis protein C CFF8240_0143 123544 - 123807 + | hypothetical protein CFF8240_0144 123817 - 124992 + | hypothetical protein TERM 123 125020 - 125056 + T 100 -12.6 -4.6635 | opp_overlap 125002 124997 125023 125030 AAATTTAGATAAATT TAACTATAAAGGCAGT AAAAA ACTGCTTTTATAGTTG TTTTGTTCCAAATTT TERM 124 125053 - 125023 - T 85 -9.9 -3.35695 | opp_overlap 125020, overlap 124997 125030 TTTAGATAAATTTAA CTATAAAGGCAGT AAAAA ACTGCTTTTATAG TTGTTTTGTTCCAAA CFF8240_0145 125524 - 125075 - | CopG protein TERM 125 125615 - 125590 - R 74 -6.2 -4.51197 | opp_overlap 125591, overlap 125591 TAGAATTAATTAAAA GTGATTTGGG TCAAAG CCCAAATCAT TATATATTATAGATA TERM 126 125614 - 125591 - R 79 -9.7 -3.29634 | opp_overlap 125591, overlap 125590 AGAATTAATTAAAAG TGATTTGGG TCAAAG CCCAAATCA TTATATATTATAGAT TERM 127 125591 - 125614 + r 90 -10.4 -3.7319 | opp_overlap 125591 125590 AGAATTAATTAAAAG TGATTTGGGT CAAA GCCCAAATCA TTATATATTATAGAT dcuB 127295 - 125622 - | anaerobic C4-dicarboxylate membrane transporter TERM 128 126640 - 126654 + g 77 -8.6 -3.53174 | GGATCTTTAATTCTT CCTTGA AAT TCAAGG TCTTTATCGAGATCT TERM 129 126988 - 127011 + g 76 -6.8 -4.58663 | opp_overlap 126988, overlap 126989 GAAGTTACGAACGGA GCCAAAATAC TTAT GTATTTTGGA TTTTTACGCAGTACT TERM 130 126989 - 127010 + g 85 -10.3 -3.34716 | opp_overlap 126988, overlap 126988 AAGTTACGAACGGAG CCAAAATAC TTAT GTATTTTGG ATTTTTACGCAGTAC CFF8240_0147 127455 - 128423 + | putative transporter CFF8240_0148 128431 - 129237 + | peptidase M48, Ste24p CFF8240_0149 130923 - 129328 - | glycolate permease GlcA TERM 131 130133 - 130145 + g 76 -6.3 -4.59773 | ACTCTGAATATATTT TTTGG TTT CCAAA TTTTTAAAAATGCAG TERM 132 130711 - 130684 - G 77 -5.6 -4.84017 | AAGTTTGTACAAAAA TATTGCGGCGAT TATA ATCCACGCAATA GGCCATAAGCCTTTT TERM 133 131675 - 131692 + G 70 -4.2 -4.73092 | AAAAGCAGTTCTTAT TATAGC TAGACC GCTATA TTTCTTTTGGATTAT CFF8240_0151 131274 - 132575 + | magnesium and cobalt efflux protein CorC TERM 134 132592 - 132614 + T 83 -8.5 -4.3739 | opp_overlap 132590 AATACCCAAGGCAGA GCGTATCAG TAAGT TTGATACGC TTTTCTAACGGAGTA CFF8240_0150 133048 - 132572 - | hypothetical protein TERM 135 133515 - 133491 - H 70 -8.7 -2.6583 | opp_overlap 133482 133492, overlap 133490 TAATTATCTAAAGAT CTGTTTTAGCT CTA AGCTAAAACAT TAAATTTAGATTGCT TERM 136 133492 - 133514 + H 95 -12.2 -3.30781 | opp_overlap 133491 133490, overlap 133482 AATTATCTAAAGATC TGTTTTAGCT CTA AGCTAAAACA TTAAATTTAGATTGC TERM 137 133524 - 133539 + H 78 -7.6 -4.39414 | opp_overlap 133524, overlap 133482 AAAACATTAAATTTA GATTGC TTTT GCAATC TTTGTCTTTAGTATT TERM 138 133666 - 133693 + H 88 -10.8 -3.14132 | opp_overlap 133666 TGCAAGTCGAACGGA GTATTAAGAGAG CTTG CTCTTTTAATAC TTAGTGGCGCACGGG TERM 139 133693 - 133666 - H 70 -8.6 -2.55074 | opp_overlap 133666 TGCAAGTCGAACGGA GTATTAAGAGAG CTTG CTCTTTTAATAC TTAGTGGCGCACGGG TERM 140 135077 - 135094 + H 76 -9.1 -3.07291 | opp_overlap 135077 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 141 135788 - 135772 - H 74 -8.1 -3.57106 | opp_overlap 135772 135768, overlap 135768 TTTAAGGCAAATGAA CACAATA TTT TATTGTG TTGTATTTTAGGCGG TERM 142 135772 - 135788 + H 78 -8.1 -3.95435 | opp_overlap 135768 135772, overlap 135768 TTTAAGGCAAATGAA CACAATA TTT TATTGTG TTGTATTTTAGGCGG TERM 143 136140 - 136123 - H 86 -9.9 -3.66803 | opp_overlap 136122 136121 GCGTAAGAGGGCAAA CCGTTAG TTTA CTAACGG GGTTGTAGGACTGCA TERM 144 138809 - 138823 + H 71 -7.2 -3.74872 | CTTCTTTTAAGAGCT CTAGTA GAC TACTAG TTTGATAGGCTGGGT TERM 145 139200 - 139147 - H 81 -8.5 -4.21974 | overlap 139135 CGATTATTTAACAAA CAGTGTTAAATAAGAGAATAGCTAA ACTA TTTTTTATTCTTTTATTTAACACTG CCCGTGGCTATACGT CFF8240_0156 139623 - 140054 + | hypothetical protein TERM 146 140080 - 140129 + F 76 -9.2 -3.04018 | opp_overlap 140116, overlap 140077 140086 TTTATTGATTCGCTT TTTAAATTTGAATAATTTGATG GTTGTA TATTAAATTATTTAAATTTAAA TACTATTTTTACTCC nuoA 140447 - 140806 + | NADH-quinone oxidoreductase, a subunit CFF8240_0158 140797 - 141303 + | NADH-quinone oxidoreductase chain b CFF8240_0159 141296 - 142981 + | NADH-quinone oxidoreductase chain c/d CFF8240_0160 142978 - 143469 + | hydrogenosomal NADH dehydrogenase 24 kDa subunit TERM 147 144002 - 144013 + G 70 -2.2 -5.38326 | gap 1, opp_overlap 144002, overlap 144002 AAACCGCATAATAAA G-CCG AGC CGGAC TTTTTGTTTGGTTGC CFF8240_0161 143456 - 144676 + | NADH-quinone oxidoreductase chain f TERM 148 144739 - 144723 - g 75 -5.1 -4.9792 | TAGTGTAGATAAAAA CGGTAAC TTA ATCACCG AGCTAAAGAAGCATA TERM 149 145598 - 145614 + G 77 -5.9 -4.74285 | overlap 145600 TGATCACCTCGTCTT TATCTCT TGA AGAGATG TTTTGTGTTATAAAT nuoG 144676 - 146070 + | NADH-quinone oxidoreductase, g subunit TERM 150 146682 - 146694 + G 72 -9.1 -2.71244 | overlap 146681 TGGGGGATATTTATC CAGCC TTT GGCTG CTATTATATTTATAA TERM 151 147094 - 147106 + G 80 -6.3 -4.75356 | TAGTAGTCGCTATCA CAGAT GTT ATCTG TTTTTACCTATATTT CFF8240_0163 146067 - 147344 + | NAD(P)H-quinone oxidoreductase chain 1 (NAD(P)hdehydrogenase I, chain 1) TERM 152 147416 - 147434 + G 74 -2.4 -5.4477 | TTATATTTGCGGGTA TGGCTAGA ACA TTTAGGCA TTTTTTTAGGAATTT CFF8240_0164 147334 - 147831 + | NADH-ubiquinone oxidoreductase subunit 8 CFF8240_0165 147831 - 148325 + | NADH-quinone oxidoreductase chain j nuoK 148318 - 148626 + | NADH-quinone oxidoreductase, k subunit TERM 153 149566 - 149535 - g 86 -5.1 -5.60864 | opp_overlap 149535 CAGATATCAAAAAAA TCCTAGCCTACTC TACTAT GAGTCAGCTTGGA TATATGTTTGCCGGA TERM 154 149806 - 149824 + G 71 -5.2 -4.58663 | opp_overlap 149806 ATTTTTCTCAAAAGA CGCACTTA TAT TAGGAGCG TTTTTAAGCGGTCAT TERM 155 150297 - 150321 + G 72 -5 -4.71223 | opp_overlap 150297 CATTTGTTTTAGGAA CCGCTAGAAT GTTTA AGTTTAGCGG TTTTGTATATTCTAA CFF8240_0167 148616 - 150427 + | NADH-quinone oxidoreductase chain l CFF8240_0168 150424 - 151911 + | NADH-quinone oxidoreductase chain m TERM 156 152022 - 152038 + G 87 -2.3 -5.95946 | overlap 152024 AATATCTTATTTTGG GTTATAA TTT TTATATC TTTTTTTATTGTTCG TERM 157 152704 - 152718 + G 78 -7.2 -4.29981 | overlap 152694 TTTTACAAGGCATCT TTGCTA TTT TAGCAA TTTTAAGTATGTTTG CFF8240_0169 151908 - 153317 + | proton-translocating NADH-quinone oxidoreductase, chain n, putative TERM 158 153390 - 153426 + F 71 -7 -3.86835 | opp_overlap 153390 153416, overlap 153416 ATGTTTTACAGACAA TATATATTTAGTTT GAAATTTAA AAACTAAATATATA TTTAATAATATTTAG CFF8240_0170 153539 - 154294 + | ABC-type Co2+ transport system, periplasmic component TERM 159 154420 - 154443 + G 72 -6.1 -4.4017 | gap 1, overlap 154423 TAAGATAGCTTGTAT GAGCGCTATG TTTTT CATAGCG-TC TTTTATACACATTCC TERM 160 154423 - 154441 + G 79 -8.9 -3.80535 | overlap 154420 GATAGCTTGTATGAG CGCTATG TTTTT CATAGCG TCTTTTATACACATT CFF8240_0171 154295 - 154879 + | cobalt transport protein CbiM CFF8240_0172 154876 - 155292 + | hypothetical protein TERM 161 155518 - 155537 + G 90 -8 -5.1925 | opp_overlap 155521 CTGCGCTTATTTTTA TAAGATCA AATT TGATCTTA TTTTTTGGATTATCG CFF8240_0173 155283 - 155936 + | cobalt ABC transporter CbiQ, permease subunit, putative CFF8240_0174 155933 - 156586 + | cobalt transport ATP-binding protein CbiO topA 156701 - 158785 + | DNA topoisomerase I CFF8240_0176 158793 - 159620 + | biotin synthase CFF8240_0177 159601 - 160767 + | sodium/hydrogen exchanger family protein TERM 162 161610 - 161629 + G 80 -9.2 -3.53224 | overlap 161612 TCCTTACTCATGTAT TAGCGCCG GTAT CGGCGCTC TTTGGGGACACGCTC TERM 163 161612 - 161627 + G 90 -11.8 -3.34398 | overlap 161610 CTTACTCATGTATTA GCGCCG GTAT CGGCGC TCTTTGGGGACACGC TERM 164 161743 - 161731 - g 76 -6.3 -4.56729 | opp_overlap 161742 ATTAAAAGAGCAAAA GATCA TAA TGATC CATTCCGTTTAATGG gltA 160849 - 162126 + | citrate synthase I TERM 165 162167 - 162152 - g 86 -10.4 -3.58536 | AAATTTATCGCTAAA GGCTGC TAGA GCAGCC GGTAAAGCGATTTTA cysQ 162123 - 162905 + | 3(2),5-bisphosphate nucleotidase pstS 163015 - 164037 + | phosphate ABC transporter, phosphate-binding protein PstS TERM 166 164085 - 164054 - f 91 -3.8 -5.98675 | gap 1, overlap 164056 TATAAAAATAAAAAA CAGGACGTCATAA TCTAAAT TTAAGACGTCC-G TATAAAGAGTATATA TERM 167 164084 - 164056 - f 80 -7.5 -4.585 | overlap 164054 TAAAAATAAAAAACA GGACGTCATAA TCTAAAT TTAAGACGTCC GTATAAAGAGTATAT TERM 168 164395 - 164413 + G 82 -4.6 -5.47399 | overlap 164396 TTCTAACAGAAATTG CTCCTTAT AAA ATAAGGAA TTTTTTTAGCGTTAA TERM 169 164396 - 164412 + G 75 -8.1 -3.87355 | overlap 164395 TCTAACAGAAATTGC TCCTTAT AAA ATAAGGA ATTTTTTTAGCGTTA pstC 164100 - 164975 + | phosphate ABC transporter, permease protein PstC pstA 164972 - 165811 + | phosphate ABC transporter, permease protein PstA TERM 170 166197 - 166183 - g 86 -2.8 -5.9362 | TAAAAGATAAAAAAA CTCTCT CAA AGATAG TTGAAAAGTCTTTAA pstB 165822 - 166583 + | phosphate ABC transporter, ATP-binding protein CFF8240_0184 166702 - 167994 + | multidrug-efflux transporter TERM 171 169066 - 169054 - g 74 -6.3 -4.32649 | AGTTGAAAAAGGAAA TCTAG GAG CTAGA ATAATGCATGAACCG CFF8240_0185 168236 - 169870 + | methyl-accepting chemotaxis protein TERM 172 169895 - 169875 - T 85 -9.8 -3.36135 | opp_overlap 169875, overlap 169878 AGAAGTTTTAAGCAA TAAGTGCC TTTTT GGCACTTA TTTTATATTGTCGAT TERM 173 169875 - 169895 + T 100 -9.8 -4.74285 | opp_overlap 169875 169878 AGAAGTTTTAAGCAA TAAGTGCC TTTTT GGCACTTA TTTTATATTGTCGAT TERM 174 169892 - 169878 - T 71 -7.1 -3.81414 | opp_overlap 169875, overlap 169875 AGTTTTAAGCAATAA GTGCC TTTTT GGCAC TTATTTTATATTGTC CFF8240_0186 170956 - 169898 - | hypothetical protein CFF8240_0187 171521 - 171105 - | acetyltransferase CFF8240_0188 172510 - 171518 - | hypothetical protein CFF8240_0189 173775 - 172582 - | molybdopterin binding domain-containing protein TERM 175 173903 - 173872 - R 93 -11.2 -3.36715 | gap 1, opp_overlap 173881, overlap 173870 173874 173881 GATATAATGATAATA TATTTATAAGTGCCT TTA AGGCACTTATAAA-A CGGGTGTTTAGAAGT TERM 176 173902 - 173874 - R 100 -16.3 -3.24091 | opp_overlap 173881, overlap 173872 173870 173881 TATAATGATAATATA TTTATAAGTGCCT TTA AGGCACTTATAAA ACGGGTGTTTAGAAG TERM 177 173881 - 173895 + r 83 -10 -3.29263 | opp_overlap 173874 173872 173870 173881 ATAATATATTTATAA GTGCCT TTA AGGCAC TTATAAAACGGGTGT TERM 178 173895 - 173881 - R 85 -10 -3.42985 | opp_overlap 173881, overlap 173874 173872 173870 ATAATATATTTATAA GTGCCT TTA AGGCAC TTATAAAACGGGTGT CFF8240_0190 175884 - 173911 - | methyl-accepting chemotaxis protein TERM 179 175163 - 175186 + g 77 -6.2 -4.6526 | GTAAGTCTGCCGTAT TTATCAAAAT TTTT ATTTTGGTAA TTTTTGAGAATTTCT CFF8240_0191 176735 - 176256 - | hypothetical protein CFF8240_0192 177196 - 176750 - | molybdopterin converting factor, subunit 2 CFF8240_0193 177419 - 177198 - | hypothetical protein CFF8240_0194 178770 - 177457 - | putative fibronectin/fibrinogen-binding protein TERM 180 177883 - 177893 + g 70 -4 -4.90471 | ATTTTTTAGCTTATT TAGA AAC TCTA TTTTCTCTTTTAAAT TERM 181 178513 - 178532 + g 70 -4.4 -4.78764 | gap 1, overlap 178518 TATTCTATTATTCTT TAGAGCTTC TAC GAAG-TCTA TTTTTGCTGAGTTTA TERM 182 179008 - 178983 - g 76 -2.5 -5.52986 | overlap 178984 178986 AGCGGAGCAAAAAAA CTAGCAAATCC GGAC GGCTTTGCCAT AGTAATGGATCATTA TERM 183 179213 - 179225 + G 80 -9.1 -3.53224 | overlap 179205 TACCTGTACGCACGG CGCTC TTG GAGCG TTTAGCACGGGAATG leuC 178827 - 180092 + | 3-isopropylmalate dehydratase large subunit CFF8240_0196 180104 - 180646 + | molybdopterin-guanine dinucleotide biosynthesis protein A CFF8240_0197 180643 - 181665 + | phospholipase A TERM 184 181658 - 181683 + T 95 -11.3 -4.3739 | opp_overlap 181663 GATTTGTATTTTTTA TCAGATAGCTG CTTT TAGCTATCTGA TTTTATAGCAAAATA CFF8240_0198 182422 - 181706 - | putative periplasmic protein CFF8240_0199 182714 - 182436 - | hypothetical protein eno 183961 - 182711 - | phosphopyruvate hydratase recA 184998 - 183961 - | recombinase A CFF8240_0202 185099 - 185965 + | hypothetical protein fliQ 185965 - 186231 + | flagellar biosynthesis protein FliQ murB 186228 - 186989 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 185 187052 - 187038 - f 82 -4.4 -5.63517 | opp_overlap 187038 187040, overlap 187031 CTGCTAAATAAAAAA TATTTT TAA AAAATA CTGTTTGGATTATTG TERM 186 187242 - 187252 + G 76 -2.6 -5.54907 | overlap 187242 TTGCCGATTACTATT TAAA GAT TTTA TTTTTATTTTATCAA CFF8240_0206 187151 - 187285 + | hypothetical protein TERM 187 187369 - 187348 - g 74 -6.5 -4.42238 | CTATGTTAATCAAAA CACTCCAGC AGCA GCTAGCGTG CAAGGTGATTTTCAA CFF8240_0207 187304 - 187633 + | hypothetical protein TERM 188 187814 - 187802 - g 71 -6.3 -4.10178 | CAATAATATCACAAA TAGCT GCA AGCTA AAAGCGAGCGGAGCT TERM 189 187899 - 187882 - g 75 -8.5 -3.36569 | overlap 187880 GCAATCTTCCAAATA TCTCAAG CAAA CTTGAGA TCAGATATTTAGATT CFF8240_0208 187638 - 187955 + | hypothetical protein cdsA 188012 - 188755 + | phosphatidate cytidylyltransferase dxr 188752 - 189834 + | 1-deoxy-D-xylulose 5-phosphate reductoisomerase CFF8240_0211 189834 - 190466 + | DNA-3-methyladenine glycosylase uraA 190456 - 191709 + | uracil permease CFF8240_0213 191713 - 192450 + | twin-arginine translocation pathway signal sequence domain-containing protein TERM 190 193246 - 193261 + G 71 -3.4 -5.16151 | GGAGATCGAGATAGT TTTATT TGAT AATAAA TTTTTCTTAAGTTTA CFF8240_0214 192464 - 193783 + | hypothetical protein CFF8240_0215 193780 - 194787 + | O-sialoglycoprotein endopeptidase CFF8240_0217 194850 - 197186 + | TPR repeat-containing protein miaA 198083 - 197181 - | tRNA delta(2)-isopentenylpyrophosphate transferase TERM 191 197746 - 197756 + g 71 -6.8 -4.15854 | ATCTTTTCAAGTTTT GGAC TAA GTCC TTTTAACATAGATTT ubiA 198168 - 199037 + | prenyltransferase CFF8240_0219 199085 - 199534 + | hypothetical protein CFF8240_0220 199527 - 200051 + | hypothetical protein TERM 192 200744 - 200715 - g 72 -2.9 -5.28561 | gap 1 AAGAGATAACAAAAA GTCCAAATAG-CCC ATC GAGTCTTTTTGAAC TTGAAGACGGTTATA moaA 200051 - 201019 + | molybdenum cofactor biosynthesis protein A TERM 193 201509 - 201499 - g 71 -3.2 -5.10877 | AGAATAAACCAAAAA GCCT TAC AAGC TATCTTTGCTAACGC CFF8240_0222 201019 - 201744 + | radical SAM domain-containing protein CFF8240_0223 202966 - 201818 - | iron-containing alcohol dehydrogenase TERM 194 202062 - 202072 + g 79 -5.4 -5.0538 | TCGCGTCCCATTTTG GCTA ATT TAGC TTTTTTAAACTCGAG TERM 195 202658 - 202640 - G 73 -7.4 -3.73953 | opp_overlap 202640 202639 202642, overlap 202644 AGGATCTCCATCAAA TTTAGCCG CAG CGGCTATA AATTTAGTGGCGTCC TERM 196 202642 - 202656 + g 75 -10 -2.67981 | opp_overlap 202640 202644, overlap 202640 202639 GATCTCCATCAAATT TAGCCG CAG CGGCTA TAAATTTAGTGGCGT CFF8240_0224 203060 - 203641 + | putative 6-pyruvoyl tetrahydrobiopterin synthase CFF8240_0225 203641 - 203820 + | hypothetical protein CFF8240_0226 203827 - 204234 + | hypothetical protein CFF8240_0227 204231 - 204884 + | hypothetical protein TERM 197 205010 - 205026 + G 80 -7.3 -4.60041 | TATTTTTTATTTTGG TGCTGAT TTT ATCGGCA TTTTTAGAGATGAAT CFF8240_0228 204886 - 205212 + | hypothetical protein TERM 198 205876 - 205858 - g 73 -4.6 -4.96646 | overlap 205860 TGAGAGAACGAAAAA TATGCTTT TTG AAAGCAAA GAGAACGCTTTTATT TERM 199 205874 - 205860 - g 75 -7.2 -4.09586 | overlap 205858 AGAGAACGAAAAATA TGCTTT TTG AAAGCA AAGAGAACGCTTTTA TERM 200 206174 - 206194 + G 77 -4.8 -5.13722 | opp_overlap 206174 ACAGATGCCAAAATA GCTAAAAT AGTCG GTTTTAGC TTTTGTTTTAATGAG CFF8240_0229 205190 - 207817 + | DNA polymerase I TERM 201 207805 - 207837 + F 77 -2.9 -5.5943 | overlap 207809 GGCGAAAAATTGGGG TGATTTAAAGTAAGA TTT TTTTACATTAAGTTA TTTTTTTGCTAATTT TERM 202 208555 - 208544 - g 82 -3 -5.72053 | TAATTAAAGAAAAAA CTAT GATA ATAG AAGCCCTAGTAGGTA CFF8240_0230 207889 - 208659 + | flagellar motor protein MotA TERM 203 208887 - 208877 - g 80 -6.8 -4.6526 | ACAAAGTTCTAAAAA CGCT AAA AGCG AGAAACAATTTGATG motB 208668 - 209384 + | flagellar motor protein MotB CFF8240_0232 209521 - 209802 + | ferredoxin, 4Fe-4S TERM 204 210035 - 210017 - g 77 -3.1 -5.42259 | GCAGCCGCAAAAAAA CTTCAAC TTAGC GTAGAAG ATGCTAAAAAATTCT ndk 209906 - 210319 + | nucleoside diphosphate kinase CFF8240_0234 210335 - 210700 + | hypothetical protein rpmF 210702 - 210848 + | 50S ribosomal protein L32 TERM 205 211379 - 211367 - g 74 -3.3 -5.2422 | opp_overlap 211367 AATGAGAGTAAAAAA CCCGA AAG TAGGG CTTTTAAGTAATGGC TERM 206 211688 - 211700 + G 74 -9.1 -3.08314 | overlap 211687 AGACTATGACGAGTA CGGAG GAG CTCCG CTTTTAGGGGTTAAA plsX 210858 - 211847 + | putative glycerol-3-phosphate acyltransferase PlsX CFF8240_0237 211855 - 212841 + | 3-oxoacyl-(acyl carrier protein) synthase III CFF8240_0238 212915 - 214042 + | hypothetical protein TERM 207 215266 - 215256 - g 73 -4 -5.14563 | GTTTTTAGTAAAAAA TATC CAC GATA CAAATTTACAGATCA CFF8240_0239 214039 - 216243 + | hypothetical protein TERM 208 216456 - 216468 + G 74 -6.3 -4.3078 | overlap 216462 AACAGTCGTTTGCGA TGCTT TTA AAGCA TTTATTCCTATGGTT CFF8240_0240 216253 - 216870 + | putative glycerol-3-phosphate acyltransferase PlsY CFF8240_0241 216867 - 217184 + | FolB domain-containing protein CFF8240_0242 217263 - 217934 + | two-component regulator TERM 209 217950 - 217984 + F 83 -10.3 -2.81922 | opp_overlap 217955, overlap 217949 217946 217952 GGGCTAGATTTGCTC TACAATTAGCATC TGCTTCTAC GATGCTAATTGTA ATCTTTTCGGTGATG TERM 210 217952 - 217982 + F 71 -8.5 -2.95081 | opp_overlap 217955, overlap 217950 217949 217946 GCTAGATTTGCTCTA CAATTAGCATC TGCTTCTAC GATGCTAATTG TAATCTTTTCGGTGA TERM 211 218289 - 218274 - g 71 -5.4 -4.52949 | CGCTCAAAAAAAATA CTACTG AATA CAGCAG CGTCGTAAATCAAGT TERM 212 218587 - 218577 - g 70 -4.6 -4.68593 | opp_overlap 218577 CTCATGAGCTAAAAA CACC TTT GGCG GTTATGAAAACTAAG CFF8240_0243 217997 - 219238 + | histidine kinase CFF8240_0244 219285 - 219536 + | ferredoxin CFF8240_0245 219536 - 221014 + | phosphatase CFF8240_0246 221629 - 221015 - | hypothetical protein CFF8240_0247 222551 - 221631 - | tRNA-dihydrouridine synthase B TERM 213 221923 - 221940 + g 80 -4.9 -5.24449 | gap 1 TCGCAGTTAGTAAGG CGCAGTAT TTC AT-CTGCG TTTTTTGCATTTATA TERM 214 222510 - 222490 - G 85 -11.9 -3.03338 | overlap 222506 222507 ACAATTCCCCTAAGA GGCAGGTCT GAA AAACCTGCC AAAGGCGCTAGAAAT CFF8240_0248 223552 - 222548 - | hypothetical protein CFF8240_0249 223917 - 223549 - | TraR/DksA family transcriptional regulator CFF8240_0250 224376 - 223927 - | hypothetical protein accD 225257 - 224376 - | acetyl-CoA carboxylase subunit beta TERM 215 224454 - 224436 - G 76 -3.8 -5.24129 | opp_overlap 224437, overlap 224437 TTCTTTCATAAAAAA CCTAACCA TAT CGGCTAGA TATTTCTTATGCTCA CFF8240_0252 225491 - 226087 + | alkyl hydroperoxide reductase TsaA TERM 216 226105 - 226125 + F 100 -11.2 -5.1848 | TATTACTACTATTTT GCAAGCCT TTTTT AGGCTTGC TTTTTTAAATTCATT CFF8240_0253 226208 - 226594 + | hypothetical protein TERM 217 226637 - 226665 + T 88 -9.2 -4.49556 | opp_overlap 226637 TTATGATTTATAAAA TATCTAAATTTA ATATA TAAATTTAGATA TTTATTTAGTAAGAA TERM 218 226665 - 226637 - T 86 -9.2 -4.43844 | opp_overlap 226637 TTATGATTTATAAAA TATCTAAATTTA ATATA TAAATTTAGATA TTTATTTAGTAAGAA serC 227803 - 226724 - | phosphoserine aminotransferase xseA 228978 - 227815 - | exodeoxyribonuclease VII large subunit TERM 219 227893 - 227908 + g 86 -2.5 -5.88197 | overlap 227894 TTGTAATTCATGGAG TGGCA TTATTT TGCCG TTTTTTTCTATTTGA ubiE 229691 - 228975 - | ubiquinone/menaquinone biosynthesis methyltransferase CFF8240_0257 231080 - 229692 - | hypothetical protein TERM 220 230692 - 230702 + g 71 -3.2 -5.18357 | GGTAGTACAAATACA TCGG CGT CTGA TTTTTTCATAAATTC TERM 221 230889 - 230902 + g 74 -2.3 -5.51353 | overlap 230882 ATTTTCTTGTCTTAT GAGGC CTTT GCCTA TTTTTATTGTTTTTA CFF8240_0258 232533 - 231256 - | putative integral membrane protein TERM 222 232446 - 232463 + g 71 -5.7 -4.56358 | ATGCAAGCGGAATGG CAAATAT ACCT ATATTTG TTTTGTATAAGTATC TERM 223 233626 - 233616 - g 70 -4 -4.96762 | TATAGATGAGAAAAA TCTT GGT AAGA TAAAACTCGAACAAA CFF8240_0259 232870 - 233853 + | secretion protein HlyD CFF8240_0260 233837 - 235492 + | ABC transporter, ATP-binding protein CFF8240_0261 235482 - 236555 + | ABC transporter, permease protein, putative CFF8240_0262 236552 - 237610 + | ABC-type multidrug transport system permease component TERM 224 237631 - 237608 - T 91 -10.4 -4.14615 | overlap 237611 AAAAATGTGCTAAAA TAAGTCCGGA TTAA TCCAGACTTA ACAATTAGAGCACTT TERM 225 237628 - 237611 - T 77 -7.7 -4.18164 | overlap 237608 AATGTGCTAAAATAA GTCCGGA TTAA TCCAGAC TTAACAATTAGAGCA CFF8240_0263 238045 - 237629 - | FUR family transcriptional regulator dxs 239930 - 238128 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 226 238420 - 238433 + g 71 -6.7 -4.1196 | AAATTTAACTTTTTA GCAGT TTGT ACTGC TTTTCCAACTCCGTT fliH 240731 - 239934 - | flagellar assembly protein H TERM 227 240456 - 240467 + g 81 -5.8 -4.90381 | TTCTTGATTTTCTAT CTGC ATTT GCAG TTTTATTATATTGCC fliG 241756 - 240728 - | flagellar motor switch protein G fliF 243462 - 241756 - | flagellar MS-ring protein hisC 244569 - 243469 - | histidinol-phosphate aminotransferase TERM 228 244429 - 244447 + g 72 -6 -4.45945 | overlap 244431 CTTTTCTATAACTTT TTTGCTAG TTC CTAGCGGA TTTTCATTGCTAGCT pheA 245648 - 244572 - | chorismate mutase/prephenate dehydratase TERM 229 244956 - 244967 + g 74 -2.2 -5.50723 | overlap 244935 TATCTTTGAACAGAT GGCT GCTG AGTC TTTTTCTTTTGATGC CFF8240_0270 246414 - 245635 - | HAD family hydrolase lysA 247625 - 246414 - | diaminopimelate decarboxylase CFF8240_0272 248899 - 247838 - | permease YjgP/YjgQ TERM 230 248008 - 247995 - G 80 -6.7 -4.69028 | ATAACATAGATAAAA CTTGC TAAA GCAAG GTTAAAAAATCTTCC CFF8240_0273 249015 - 249662 + | hypothetical protein TERM 231 249866 - 249851 - g 70 -4 -4.87803 | TAGTTTCAAAGAAAA TGCTCT CATA AAAGCA ACAGCGGTTTATGCG CFF8240_0274 249711 - 250325 + | Ham1 family protein TERM 232 251570 - 251584 + F 78 -7.2 -4.58773 | opp_overlap 251569 TAGAGGCGTAAGTAT CTATGA TGA TCATAG TTTTGGTTTGATAGA CFF8240_0277 252665 - 253612 + | luciferase-alpha subunit CFF8240_0278 253623 - 254618 + | periplasmic binding family protein CFF8240_0279 254605 - 255585 + | ABC transporter permease CFF8240_0280 255582 - 256310 + | iron chelate ABC transporter ATP-binding protein TERM 233 256668 - 256652 - g 73 -3.7 -5.12707 | GTAAAGGTTAAAAAA CTATCGT TTG AAGATAG CTGGGAAGAGCTTCC CFF8240_0281 256307 - 257098 + | hypothetical protein exbB 257109 - 257537 + | TonB-system energizer ExbB expD 257534 - 257914 + | TonB system transport protein ExbD CFF8240_0284 257922 - 258674 + | TonB family protein TERM 234 259846 - 259821 - g 86 -4.9 -5.67063 | gap 1 CGCAGTAGAAAAAAA GATCTACATATA CAA CATATGT-GATC ACGAAGAGTGTTTCA lys 258856 - 260070 + | saccharopine dehydrogenase CFF8240_0286 260067 - 260327 + | hypothetical protein rpmE 260388 - 260588 + | 50S ribosomal protein L31 CFF8240_0288 260593 - 261408 + | hypothetical protein TERM 235 261705 - 261688 - g 85 -4.1 -5.75478 | overlap 261691 AATGAGATAAAAAAA CAAGACT TCTT AGTCGTG CTATATGGATTAAGC TERM 236 261702 - 261691 - g 73 -4.4 -4.92669 | overlap 261688 GAGATAAAAAAACAA GACT TCTT AGTC GTGCTATATGGATTA CFF8240_0289 261445 - 262125 + | RNA methyltransferase CFF8240_0290 262205 - 263044 + | hypothetical protein CFF8240_0291 263038 - 263856 + | putative periplasmic protein CFF8240_0292 263866 - 265074 + | aspartate aminotransferase TERM 237 265097 - 265124 + G 79 -10 -3.19463 | gap 1, overlap 265100 GATACTTGGATTAGG TACTGTTGGCAGC GAA GTTGCCAAC-GTA TTAATAAATAATAGA TERM 238 265100 - 265122 + G 83 -10.6 -3.15996 | overlap 265097 ACTTGGATTAGGTAC TGTTGGCAGC GAA GTTGCCAACG TATTAATAAATAATA TERM 239 265159 - 265179 + G 72 -8.3 -3.43961 | opp_overlap 265153 265174, overlap 265174 TGATAACAGCTAGAT CGGGTGTTG AGA TAACACCTG TTATAGGTGTTGTAC CFF8240_0293 265071 - 266339 + | homoserine dehydrogenase CFF8240_0294 266341 - 266679 + | hypothetical protein trx 266752 - 267066 + | thioredoxin TERM 240 267073 - 267087 + F 86 -10 -3.67967 | opp_overlap 267073 CTTTTATAATCCAAA TGGGGT TTT ACCCCA TTATCTGTCTGTATA TERM 241 267087 - 267073 - f 89 -10 -3.80625 | opp_overlap 267073 CTTTTATAATCCAAA TGGGGT TTT ACCCCA TTATCTGTCTGTATA TERM 242 267214 - 267233 + G 82 -8.6 -4.04206 | gap 1 ATAATTGGAGGAGGT CCTGCCGGA CTA TCCG-CAGG TTTGTATGCAACTCG trxB 267184 - 268128 + | thioredoxin-disulfide reductase TERM 243 268121 - 268154 + F 93 -11.3 -3.51976 | opp_overlap 268130, overlap 268122 268130 ATATAGAGAGCCTTC ATTATTAAAGTCAGT TTTT ACTGACTTTAATAAA TTCATTTAAGCGATT TERM 244 268122 - 268153 + F 100 -14.8 -2.70704 | opp_overlap 268130, overlap 268121 268130 TATAGAGAGCCTTCA TTATTAAAGTCAGT TTTT ACTGACTTTAATAA ATTCATTTAAGCGAT TERM 245 268145 - 268130 - f 73 -7.6 -3.78775 | opp_overlap 268130 268122 268121 GCCTTCATTATTAAA GTCAGT TTTT ACTGAC TTTAATAAATTCATT TERM 246 268130 - 268145 + F 73 -7.6 -3.80516 | opp_overlap 268130, overlap 268122 268121 GCCTTCATTATTAAA GTCAGT TTTT ACTGAC TTTAATAAATTCATT TERM 247 268251 - 268268 + G 82 -4.1 -5.41746 | CAAAAACTATCTTAG GCAGTAT TGCC GTGCTGC TTTTTTTAACAGGTT TERM 248 268354 - 268364 + G 77 -5.4 -4.89852 | opp_overlap 268352 268354 TCCGGTTTCTAAAGA CAAG AGA CTTG TTTTTGTCAATATCA CFF8240_0297 268220 - 268999 + | hypothetical protein TERM 249 269041 - 269008 - f 74 -8.3 -3.60971 | opp_overlap 269009 269010, overlap 269009 269012 ATTTTAATTTTTAAA TTTAGGCTCAAATAA GTTT TTATTTGAGCCTAGT TTTTTAAATTTAAAA TERM 250 269040 - 269009 - f 93 -11.8 -2.76261 | opp_overlap 269009 269010, overlap 269008 269012 TTTTAATTTTTAAAT TTAGGCTCAAATAA GTTT TTATTTGAGCCTAG TTTTTTAAATTTAAA TERM 251 269009 - 269040 + F 100 -14 -5.22039 | opp_overlap 269009 269008 269012, overlap 269010 TTTTAATTTTTAAAT TTAGGCTCAAATAA GTTT TTATTTGAGCCTAG TTTTTTAAATTTAAA TERM 252 269010 - 269039 + F 100 -15.3 -3.72139 | opp_overlap 269009 269008 269012, overlap 269009 TTTAATTTTTAAATT TAGGCTCAAATAA GTTT TTATTTGAGCCTA GTTTTTTAAATTTAA TERM 253 269037 - 269012 - f 100 -13.5 -2.65279 | opp_overlap 269010 269009, overlap 269009 269008 TAATTTTTAAATTTA GGCTCAAATAA GTTT TTATTTGAGCC TAGTTTTTTAAATTT dapB 269194 - 269958 + | dihydrodipicolinate reductase purF 269960 - 271300 + | amidophosphoribosyltransferase CFF8240_0300 271892 - 271359 - | hypothetical protein CFF8240_0301 272332 - 271892 - | putative integral membrane protein hisIE 273140 - 272409 - | phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase CFF8240_0303 274244 - 273150 - | SPFH domain-containing protein TERM 254 273841 - 273851 + g 73 -4 -5.05113 | opp_overlap 273840 CGAGAATCAAGAACC GATA TAG TATC TTTTGTTTCTATACC ilvE 275185 - 274262 - | branched-chain amino acid aminotransferase CFF8240_0305 275528 - 275268 - | XRE family transcriptional regulator CFF8240_0306 275618 - 275875 + | hypothetical protein CFF8240_0307 275883 - 276281 + | hypothetical protein CFF8240_0308 276283 - 276510 + | hypothetical protein CFF8240_0309 276512 - 277018 + | hypothetical protein TERM 255 277197 - 277179 - g 70 -3.8 -4.85822 | ATTATAAATATAAAA TTAGCAGG TTC CATGCCAA GCCGTGAAAAACTAG CFF8240_0310 277158 - 277358 + | hypothetical protein CFF8240_0311 277359 - 277919 + | anti-oxidant AhpCTSA family protein TERM 256 277940 - 277929 - T 71 -4.4 -4.83759 | AAGTAAATTTAAAAA GCAA CGCT TTGC ATAATCTTAATATAT CFF8240_0312 281064 - 277996 - | hypothetical protein TERM 257 278118 - 278130 + g 71 -6.3 -4.16351 | CCATCAATTTTTTAC GTAGA TTT TCTAC TCTTTTTTGCGCTAT TERM 258 280651 - 280661 + g 70 -4.6 -4.65666 | overlap 280647 TTCGCCTATTTCATA CTCG AAT CGGG TTGTTTTTTCGGTAT TERM 259 280945 - 280955 + g 71 -5.4 -4.58663 | opp_overlap 280945 TAAATTCGCATCATA TTGC GCG GCAA TTTTTGGCACATAAT TERM 260 281564 - 281549 - g 72 -6.2 -4.431 | opp_overlap 281548 281549 TACTCAGTTAGAAAA TGCATT AAAA AATGCA GTTATTGGTACAAAC CFF8240_0313 281169 - 282236 + | hypothetical protein fabZ 282842 - 283330 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 283340 - 284125 + | UDP-N-acetylglucosamine acyltransferase TERM 261 284373 - 284356 - g 76 -4.2 -5.09204 | ATAGGTCAAGAAAAA GCTAAA AAAGTA TTTAGC GTAGGCGTTTATAAC clpX 284125 - 285345 + | ATP-dependent protease ATP-binding subunit TERM 262 286029 - 286019 - g 70 -2.4 -5.38839 | GAGATAAAAATAAAA GTCG GTT CGGC AACTCAGCTTCCAAA mreB 285359 - 286396 + | rod shape-determining protein MreB CFF8240_0318 286434 - 287138 + | rod shape-determining protein MreC TERM 263 287659 - 287672 + G 72 -9.5 -2.6252 | overlap 287655 TTATACCCTTGGAGG CGCCG GAAG CGGCG TAGCTTATAATATAG TERM 264 288020 - 288007 - g 74 -3.1 -5.24449 | gap 1 TATAAATCCAAAAAA CGG-CA GAA TGACCG TGATCGAGATGAATC carB 287138 - 290392 + | carbamoyl phosphate synthase large subunit CFF8240_0320 290389 - 291228 + | molybdenum transport system protein ModD CFF8240_0321 291225 - 291647 + | hypothetical protein TERM 265 291653 - 291663 + F 78 -2.6 -5.89921 | opp_overlap 291650 291653, overlap 291650 AATTAGATAATATTA TAAT ATA ATTA TTTTTTTATTGTAAT CFF8240_0322 291749 - 293047 + | methyl-accepting chemotaxis protein TERM 266 293041 - 293072 + T 74 -8.2 -3.56821 | opp_overlap 293042 293049 293071, overlap 293043 293049 293071 CGCAATGTCTCAAGG AGTTTAAAGAACCT TTTT AGGTTCTTTAAATA TTTAAGAAATATCGT TERM 267 293071 - 293042 - T 75 -9.5 -2.72379 | opp_overlap 293041 293043 293049, overlap 293049 GCAATGTCTCAAGGA GTTTAAAGAACCT TTTT AGGTTCTTTAAAT ATTTAAGAAATATCG TERM 268 293043 - 293070 + T 100 -13 -3.36073 | opp_overlap 293042 293049, overlap 293041 293049 CAATGTCTCAAGGAG TTTAAAGAACCT TTTT AGGTTCTTTAAA TATTTAAGAAATATC TERM 269 293064 - 293049 - T 71 -7.6 -3.63895 | opp_overlap 293049 293043 293041, overlap 293042 CTCAAGGAGTTTAAA GAACCT TTTT AGGTTC TTTAAATATTTAAGA TERM 270 293049 - 293064 + T 73 -7.6 -3.81137 | opp_overlap 293042 293049, overlap 293043 293041 CTCAAGGAGTTTAAA GAACCT TTTT AGGTTC TTTAAATATTTAAGA CFF8240_0323 293958 - 293074 - | hypothetical protein TERM 271 293429 - 293450 + g 71 -8.9 -3.02074 | TGACTATTTGGATCG GGTTTTTTA AATT TAAAAAACC TATCTCGTCTATTTA TERM 272 293737 - 293747 + g 76 -2.6 -5.44119 | overlap 293731 CCAGTTTTTTATCTC TATA AGA TATA TTTTTTTGCCATCAA CFF8240_0324 294598 - 293951 - | MoeB/thiF family protein TERM 273 294077 - 294064 - G 74 -3.1 -5.24129 | TTTCGGTAGAAAAAA CAACT TTGT AGTCG TTTTTAAATCCGGCT surE 295371 - 294601 - | stationary phase survival protein SurE lpxB 295450 - 296481 + | lipid-A-disaccharide synthase greA 296518 - 297003 + | transcription elongation factor GreA TERM 274 297724 - 297748 + G 70 -2.1 -5.37865 | overlap 297725 CGCATTTAGTGCCTC TTACTCGCGGA ATG TTAGTGAGTAG TTTTTTGCTTCTTAA argC 297012 - 298040 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 275 298435 - 298448 + G 84 -3.9 -5.75599 | CTTTGTTTTAAGATC TCTTA GAAA TAAGA TTTTTTTATGGTTTA CFF8240_0329 298037 - 298756 + | metallophosphoesterase CFF8240_0330 298749 - 299705 + | chemotaxis protein CheV CFF8240_0331 299716 - 302028 + | chemotaxis histidine kinase CFF8240_0332 302038 - 302535 + | purine-binding chemotaxis protein CheW TERM 276 302585 - 302607 + G 91 -12.1 -3.63782 | opp_overlap 302588 TGACTCTACTTTAAT GGATGGTGA GACTA TCACCATCC TTTCAAGTGCTGTTG serB 302544 - 303167 + | phosphoserine phosphatase SerB tal 303180 - 304175 + | transaldolase pilT 304185 - 305381 + | twitching motility protein PilT CFF8240_0336 305442 - 305978 + | 50S ribosomal protein L25/general stress protein Ctc TERM 277 306111 - 306134 + G 81 -8.2 -4.09963 | CCGGTAAATTTCAAG GCGAACTTTT TAAA AAGGGTTCGC TTCTTCTTCTTAAAC pth 305978 - 306523 + | peptidyl-tRNA hydrolase TERM 278 306694 - 306712 + G 95 -13.2 -3.60818 | opp_overlap 306692 306691 TTAGCGATGAAAGCG GCGCAAAG GTA CTTTGCGC TTTAAAAGGTTTTGC nspC 306597 - 307730 + | carboxynorspermidine decarboxylase CFF8240_0339 307814 - 308413 + | hypothetical protein selD 308472 - 309425 + | selenide, water dikinase TERM 279 309441 - 309457 + G 74 -6.7 -4.3129 | opp_overlap 309441 309440 GAGTAATAAATGAAT TTTAAAG AGG CTTTAAA TTTTCGTCATGCATG TERM 280 309676 - 309636 - g 72 -8.4 -3.34344 | gap 1, opp_overlap 309641 309643 GCATGCTGGAATCAA GCTCAGATCACGACTGCCT CAAA AGTCA-TCGTGATCTATGC TAAGATAGACGATCT TERM 281 309789 - 309762 - g 74 -5.7 -4.8083 | opp_overlap 309762 309765, overlap 309755 309763 GAAGATGAGCAAAAA GCATATTTGCA AAGATA TGCAAATATGA TTGAATATAACGAAG TERM 282 309788 - 309763 - g 79 -9.2 -3.47413 | opp_overlap 309762 309765, overlap 309755 309762 AAGATGAGCAAAAAG CATATTTGCA AAGATA TGCAAATATG ATTGAATATAACGAA CFF8240_0341 309435 - 310061 + | nitroreductase family protein flhB 310072 - 311145 + | flagellar biosynthesis protein FlhB TERM 283 311194 - 311173 - T 72 -6.7 -4.17089 | opp_overlap 311165 311173 TTCAAATTTTTAAAA CTAGTTCTA AATT TAAAACTAG TTTTGAGACTTACTA nhaA 312363 - 311191 - | Na+/H+ antiporter NhaA TERM 284 311792 - 311778 - G 72 -5.8 -4.3208 | overlap 311791 TTTTATAATTTAAAA TAGTTA GAA TAACTA TAGCGCAAAACGATA TERM 285 311914 - 311902 - G 70 -4.1 -4.73388 | AAGGCTTAGTAAAAA CAGCT TCA AGCTA ATAGGAATTCTACTT TERM 286 312622 - 312590 - R 71 -8.1 -3.15008 | opp_overlap 312593 312598, overlap 312593 312621 CTTTATAATAAATCA CAATTATATTTAAAC TAA ATTTAAATATAATTA AATATTTTATAAATA TERM 287 312619 - 312593 - R 73 -7.6 -3.70568 | opp_overlap 312593 312598, overlap 312590 TATAATAAATCACAA TTATATTTAAAC TAA ATTTAAATATAA TTAAATATTTTATAA uvrA 315548 - 312717 - | excinuclease ABC subunit A TERM 288 315644 - 315620 - g 74 -2.3 -5.43621 | opp_overlap 315626, overlap 315626 AGAAATGAGAAAAAA TCTAAATTTAA AAA TTAAATTTCAA ATAATTTTTATATTT CFF8240_0345 315552 - 315668 + | hypothetical protein CFF8240_0346 315785 - 317443 + | sodium-dependent transporter TERM 289 317446 - 317481 + T 86 -6.3 -5.37345 | opp_overlap 317449, overlap 317448 317449 TCTAAAGATTTAATT TAATTTTCTTGGCTA AATTAC TAGCCAAGAAAAATC TTTTTTATAGTTAGC TERM 290 317448 - 317479 + T 86 -8.9 -4.31563 | opp_overlap 317449, overlap 317446 317449 TAAAGATTTAATTTA ATTTTCTTGGCTA AATTAC TAGCCAAGAAAAA TCTTTTTTATAGTTA TERM 291 317449 - 317478 + T 95 -12.4 -3.17311 | opp_overlap 317449, overlap 317448 317446 AAAGATTTAATTTAA TTTTCTTGGCTA AATTAC TAGCCAAGAAAA ATCTTTTTTATAGTT TERM 292 317478 - 317449 - T 100 -13.1 -3.2128 | opp_overlap 317449 317448 317446 AAAGATTTAATTTAA TTTTCTTGGCTAA ATTA CTAGCCAAGAAAA ATCTTTTTTATAGTT CFF8240_0347 318209 - 317466 - | hypothetical protein TERM 293 317751 - 317739 - G 74 -3.5 -5.30575 | TAAAAATCCAAAAAA TATAA GAC TTATA AGCATTCCTCCGCCG CFF8240_0348 318959 - 318231 - | hypothetical protein CFF8240_0349 319021 - 319527 + | periplasmic protein TERM 294 319535 - 319566 + F 95 -11.2 -4.33417 | overlap 319548 CTAAGTAATTTGCTC TTTTATCCTAAAAT TTAG ATTTTGGGATAAAA TTTCTTATACCTAAA TERM 295 320172 - 320154 - g 73 -4.6 -4.94992 | overlap 320156 CTAAATTTAGAAAAA GAGCATTT TAA AAATGCTA TAAAGAAAGCTAAAG TERM 296 320170 - 320156 - g 75 -7.2 -4.08693 | overlap 320154 AAATTTAGAAAAAGA GCATTT TAA AAATGC TATAAAGAAAGCTAA TERM 297 320940 - 320928 - g 71 -3.3 -5.14477 | GAGATATGTAAAAAA CGAAG AAG CTGCG TAAAAGTTTTTGAGC CFF8240_0350 319719 - 320978 + | anthranilate synthase component 1 TERM 298 321838 - 321825 - g 79 -5.3 -5.04601 | GTGATAAATTAAAAA CGATA AATA TATCG ACCACGGTGGCTTTC CFF8240_0351 320975 - 322570 + | anthranilate synthase component II trpF 322567 - 323172 + | N-(5'phosphoribosyl)anthranilate isomerase trpB 323169 - 324350 + | tryptophan synthase subunit beta trpA 324343 - 325092 + | tryptophan synthase subunit alpha TERM 299 325090 - 325104 + F 80 -4.2 -5.67063 | opp_overlap 325090 325092, overlap 325092 GAGATATTCAAAAAA TAGTCG TTT CGACTC TTTTTTTGTAGTAAA TERM 300 325104 - 325090 - f 71 -4.2 -5.14477 | opp_overlap 325090 325092, overlap 325092 GAGATATTCAAAAAA TAGTCG TTT CGACTC TTTTTTTGTAGTAAA TERM 301 325092 - 325102 + F 76 -6.8 -4.47611 | opp_overlap 325090 325092, overlap 325090 GATATTCAAAAAATA GTCG TTT CGAC TCTTTTTTTGTAGTA TERM 302 325102 - 325092 - f 72 -6.8 -4.19215 | opp_overlap 325092 325090, overlap 325090 GATATTCAAAAAATA GTCG TTT CGAC TCTTTTTTTGTAGTA TERM 303 325138 - 325163 + F 75 -9.3 -2.72746 | opp_overlap 325143, overlap 325136 325135 325130 325143 TTAATTTTAATAGGT TTAAATTTGAA ATAT TTCAAATTTAA TACATTATATTTTTA CFF8240_0355 325241 - 325660 + | hypothetical protein TERM 304 325782 - 325768 - g 85 -8.6 -4.21936 | TCTATAACCGTAAAA GAGCTT TTA AAGCTC GAAGTAGGATCGGTT fliN 325657 - 325962 + | flagellar motor switch protein TERM 305 326526 - 326516 - g 76 -4.6 -5.09685 | TAATATAGATAAAAA GCCG ATT CAGC CAAGTGAGCCAAAAG TERM 306 326636 - 326623 - g 70 -3.8 -5.00895 | CCGAGGAGATAAAAA CTCC GTCATG GGAG CTAAAAACAGATGAT TERM 307 326692 - 326680 - g 80 -4.9 -5.24989 | TTATATATGAAAAAA GTATT GAT AATAC AAATAAAGTTGCTCT CFF8240_0357 325959 - 326906 + | hypothetical protein CFF8240_0358 327515 - 326946 - | hypothetical protein modB 328206 - 327541 - | molybdate ABC transporter, permease protein CFF8240_0360 329054 - 328203 - | molybdenum transport ATP-binding protein TERM 308 328647 - 328661 + g 71 -5.6 -4.57569 | opp_overlap 328639 328649, overlap 328649 CATCAAAGCTCTAGC AAGCGC AAC GCGCTG TTTTTGACCGCCTGA TERM 309 328659 - 328649 - G 70 -8.2 -3.17714 | opp_overlap 328647 328649, overlap 328639 TCAAAGCTCTAGCAA GCGC AAC GCGC TGTTTTTGACCGCCT TERM 310 328649 - 328659 + g 79 -8.2 -3.90316 | opp_overlap 328639 328649, overlap 328647 TCAAAGCTCTAGCAA GCGC AAC GCGC TGTTTTTGACCGCCT CFF8240_0361 329425 - 329051 - | hypothetical protein modA 330165 - 329425 - | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 311 330305 - 330284 - R 71 -8.7 -2.91681 | opp_overlap 330283 330285, overlap 330287 TTTTAAGTTTAGAGA TTAGCGGAG ATAT CTCCGCTAT GTTTTAAGCTCCTAT TERM 312 330285 - 330304 + r 95 -12.2 -3.67634 | opp_overlap 330284 330287, overlap 330283 TTTAAGTTTAGAGAT TAGCGGAG ATAT CTCCGCTA TGTTTTAAGCTCCTA TERM 313 330302 - 330287 - R 81 -10.4 -2.70275 | opp_overlap 330285 330283, overlap 330284 TAAGTTTAGAGATTA GCGGAG ATAT CTCCGC TATGTTTTAAGCTCC CFF8240_0363 331100 - 330309 - | ModE family transcriptional regulator TERM 314 330505 - 330518 + g 70 -3.9 -4.91459 | ATCTTGTTTGCAGCT GATAT CTTT ATATC TTTTTCTCCATCTTG TERM 315 330703 - 330717 + g 73 -7.2 -3.89881 | TTTATATCTGTTATC TCAACT AAA AGTTGA TTTCTAGCACTTAAT CFF8240_0364 331264 - 331977 + | VacJ family lipoprotein ttg2D 331980 - 332579 + | toluene tolerance protein Ttg2D CFF8240_0367 332579 - 335044 + | putative integral membrane protein CFF8240_0366 335592 - 335017 - | transport-associated, putative TERM 316 335868 - 335879 + G 72 -5.8 -4.33851 | opp_overlap 335867 TGTTCGTGGACAAGG GCGA CGTA TCGC TTTCTTCTGGGCTTT TERM 317 337854 - 337844 - g 71 -6.8 -4.24963 | GATAACTATCTAAAA GGAC TTA GTCC AAGCATAAATACCGA TERM 318 339511 - 339533 + G 83 -11.4 -2.72991 | opp_overlap 339509, overlap 339513 TATATTAAATATATG TAGCGCGTTT AAA AAACGTGCTA TAATTAAAGGTGTAG TERM 319 339513 - 339531 + G 76 -9.6 -2.90901 | opp_overlap 339509, overlap 339511 TATTAAATATATGTA GCGCGTTT AAA AAACGTGC TATAATTAAAGGTGT TERM 320 339959 - 339947 - g 77 -3.5 -5.5208 | TTAGAACATAAAAAA TTAAA TAT TTTAA ACACCATAATCGGAG CFF8240_0368 335852 - 339979 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor TERM 321 340579 - 340566 - g 84 -5.3 -5.5762 | AGCAAATATAAAAAA CGATA AAGA TATCG ATGAGGTTATAAAAA hisZ 339982 - 340833 + | ATP phosphoribosyltransferase regulatory subunit purA 340844 - 342094 + | adenylosuccinate synthetase TERM 322 342155 - 342173 + G 73 -8.1 -3.53091 | opp_overlap 342155 ATAAAATAGAGCTAA GCCTTGC TAAAT GCAGGGC TTTAGACAAAGAGCT CFF8240_0371 342091 - 342516 + | hypothetical protein CFF8240_0372 342513 - 343046 + | pdp protein CFF8240_0373 343173 - 343724 + | hypothetical protein TERM 323 343954 - 343941 - g 70 -4.5 -4.6644 | opp_overlap 343941 AAGAGAGTGCAAAAA TCCAC GCTA GCGGA GTTTTTATGCGTAAT carA 343724 - 344842 + | carbamoyl phosphate synthase small subunit CFF8240_0375 344842 - 345507 + | hypothetical protein TERM 324 346006 - 345983 - g 74 -3.2 -5.31519 | overlap 345997 AGATCTAAATAAAAA TCTCGAACAA AGAG TTCTTCAAGA AGTAGCAAAAAATGA CFF8240_0376 345504 - 346742 + | PAS/PAC sensor signal transduction histidine kinase CFF8240_0377 346735 - 347415 + | DNA-binding response regulator ccoN 347572 - 349041 + | cytochrome c oxidase, Cbb3-type, subunit I TERM 325 349571 - 349557 - g 71 -8.6 -3.08073 | ATGATGCTGAAGATA TGCCAA AAC TTGGCA CTTGGGAAGCAACTC ccoO 349052 - 349717 + | cytochrome c oxidase, Cbb3-type, subunit II CFF8240_0380 349728 - 349958 + | cytochrome c oxidase, Cbb3-type, CcoQ subunit TERM 326 350510 - 350520 + G 80 -6.8 -4.71426 | opp_overlap 350499 350502, overlap 350502 GAACCTACTGCTAAG GCTG TAG CAGC TTTTGTTGCTAAAGA ccoP 349955 - 350818 + | cytochrome c oxidase, Cbb3-type, subunit III CFF8240_0382 350820 - 351038 + | hypothetical protein TERM 327 351158 - 351185 + G 83 -11.4 -2.71059 | opp_overlap 351149 351152 351162, overlap 351162 AGTTAATAACTTTGT TAAAGAGCGGTT TTTT AGCCGCTCTTTG TAGCTTTGGTCTTAA TERM 328 351162 - 351181 + G 87 -10 -4.03204 | opp_overlap 351162, overlap 351158 AATAACTTTGTTAAA GAGCGGTT TTTT AGCCGCTC TTTGTAGCTTTGGTC TERM 329 351181 - 351162 - g 71 -7.8 -3.56366 | opp_overlap 351162 351158 AATAACTTTGTTAAA GAGCGGTT TTTT AGCCGCTC TTTGTAGCTTTGGTC CFF8240_0383 351154 - 351738 + | hypothetical protein CFF8240_0384 351742 - 352275 + | putative lipoprotein TERM 330 352537 - 352564 + G 81 -9.4 -3.87815 | TAGCGATTATTTATT TTCCTTTTTTAA AGAG TTAAAAAGGGAA TTTGTGAGCATAAAA CFF8240_0385 352256 - 354616 + | hypothetical protein TERM 331 356243 - 356227 - g 76 -3.7 -5.26918 | overlap 356229 ATAGGGGAGAAAAAA TCCAAGC TGA GCTTAAA TGCCACAGCAGAGCT CFF8240_0386 354613 - 357378 + | ATP-dependent DNA helicase UvrD rplM 357457 - 357882 + | 50S ribosomal protein L13 TERM 332 357930 - 357919 - g 74 -2.2 -5.48213 | CAGGTAAAAGAAAAA CAGC AGTT GCTA AAGTTTGGGTAAAAC rpsI 357885 - 358274 + | 30S ribosomal protein S9 TERM 333 358323 - 358299 - f 76 -8.7 -3.6106 | opp_overlap 358297 CGCAATATTCTCAAA TTTGGAAGC TTTTTTG GCTTCCAAA CCATCTTTTCAAATT CFF8240_0389 358574 - 359611 + | outer membrane fibronectin-binding protein TERM 334 359648 - 359675 + G 79 -10 -3.23449 | gap 1, opp_overlap 359648 359645, overlap 359646 359641 ACATTGACTATATGA GCGTACTTGC-AC TTA GTAGTAAGTACGC TATTAAATTTATAGT CFF8240_0390 359617 - 360441 + | MscS mechanosensitive ion channel TERM 335 360549 - 360573 + G 73 -7.2 -4.04326 | opp_overlap 360566, overlap 360567 TTTTCTAAATTTGGA TTTGCTCAGC CAAAT GATGAGCAAA TTTGCTCTTTAATTG CFF8240_0391 360450 - 361100 + | phosphoglycolate phosphatase TERM 336 361908 - 361896 - g 80 -6.3 -4.68424 | GAAGCTATTCAAAAA TTTCG CGA CGAAA GTATGAATCCAGAGA nifJ 361290 - 364844 + | pyruvate:ferredoxin (flavodoxin) oxidoreductase TERM 337 364851 - 364875 + F 81 -10.1 -2.9587 | opp_overlap 364848, overlap 364848 364865 TTAGCATAATATTTA GTAGCTTCC TTATCTT GGAAGCTAC TCCTTTCAAATTTAA TERM 338 365309 - 365327 + G 71 -7.6 -3.5393 | GACCAAAGATAGCTT TTTATTTG ATC CAAATAAA TTTCCACGCAATGCT CFF8240_0393 364956 - 365516 + | hypothetical protein TERM 339 365609 - 365597 - g 77 -6.2 -4.78848 | TTTTTAAACATAAAA CCGG ATTCA CCGG AAAATATAGAGAAAA CFF8240_0394 365543 - 366154 + | hypothetical protein CFF8240_0395 366141 - 366569 + | hypothetical protein TERM 340 366650 - 366686 + F 73 -8.1 -3.45073 | opp_overlap 366650, overlap 366648 366646 366652 AACTCCTTTCTAAAA TTTCTAGGTGAGATTAG TAA CAAATCTCACCTAAATA TATATTTTGGTAGAT TERM 341 366686 - 366650 - f 91 -10.3 -4.08064 | opp_overlap 366650 366648 366646 366652 AACTCCTTTCTAAAA TTTCTAGGTGAGATTAG TAA CAAATCTCACCTAAATA TATATTTTGGTAGAT TERM 342 366652 - 366684 + F 90 -10.7 -3.28966 | opp_overlap 366650, overlap 366650 366648 366646 CTCCTTTCTAAAATT TCTAGGTGAGATTAG TAA CAAATCTCACCTAAA TATATATTTTGGTAG CFF8240_0396 366787 - 368007 + | major outer membrane protein TERM 343 368015 - 368033 + F 91 -10.3 -4.36433 | CATTCTAATTTCTAT GACCCGA CTTGT TCGGGTC TTTCTTAATATTTAA CFF8240_0397 368284 - 369504 + | major outer membrane protein TERM 344 369512 - 369530 + F 88 -10.3 -3.33661 | overlap 369509 TATTCTAATCTCTAT GACCCGA CTTGT TCGGGTC TATTATCCTTAAATC TERM 345 369965 - 370004 + G 72 -8 -3.51825 | gap 1, opp_overlap 369974, overlap 369967 369975 TATCTCAGCGTTTAG CC-GACATGAGTGCAGAAG ATA TTTCTGCATCTATGTCTGG TTATAATTCAGATCC TERM 346 369967 - 370001 + G 73 -9.4 -2.89447 | opp_overlap 369974, overlap 369965 369975 TCTCAGCGTTTAGCC GACATGAGTGCAGAAG ATA TTTCTGCATCTATGTC TGGTTATAATTCAGA CFF8240_0398 369628 - 370197 + | cytochrome c family protein, putative TERM 347 370200 - 370219 + F 79 -9.4 -3.29581 | overlap 370195 TTATCTTGAGTAGCA TTATGGTC AATT GACCATAA TTCGGTTCTGTATTT TERM 348 371079 - 371094 + G 76 -7.6 -3.89881 | TGCAAGCGGCGATGG CGTATC AAAT GATACG TTTATAGAGCTTGCT CFF8240_0399 370342 - 371460 + | branched-chain amino-acid ABC transport system periplasmic binding protein TERM 349 371513 - 371543 + F 82 -6.3 -5.04601 | overlap 371517 TTCATATAATAAGTT TATGTACTAGAAG TAAGC CTTCTAGTATAGA TTTTTACTTTATAGC TERM 350 371517 - 371539 + F 77 -9.3 -2.90395 | overlap 371513 TATAATAAGTTTATG TACTAGAAG TAAGC CTTCTAGTA TAGATTTTTACTTTA TERM 351 371653 - 371704 + F 71 -7 -3.76815 | opp_overlap 371658, overlap 371658 AGTGGTAAAAGCATA TGAAATTTACTTTTTTAATTATCA AATT TGGTATTTAAAAAAGTAAATTAAA TTTGAAGTTTTAAAT TERM 352 371658 - 371699 + F 93 -11.3 -3.29613 | opp_overlap 371658, overlap 371653 TAAAAGCATATGAAA TTTACTTTTTTAATTATCA AATT TGGTATTTAAAAAAGTAAA TTAAATTTGAAGTTT TERM 353 371699 - 371658 - f 84 -9.1 -3.92694 | opp_overlap 371658 371653 TAAAAGCATATGAAA TTTACTTTTTTAATTATCA AATT TGGTATTTAAAAAAGTAAA TTAAATTTGAAGTTT TERM 354 371877 - 371891 + G 89 -7.1 -5.38047 | ATATAATGATGGTTG GAGCG TATGC CGCTC TTTTTTCTATGACTA CFF8240_0400 371735 - 372631 + | hydrophobic amino acid ABC transporter permease/ATP-binding protein CFF8240_0401 372634 - 373689 + | ABC transport system permease protein CFF8240_0402 373686 - 374450 + | high affinity branched-chain amino acid ABC transporter, ATP-binding protein CFF8240_0403 374447 - 375142 + | high affinity branched-chain amino acid ABC transporter, ATP-binding protein TERM 355 376253 - 376267 + G 72 -5.8 -4.27316 | overlap 376235 AAAACTTCCGTTTTC TCTTTA TCT TAAAGA TTTTGAATTAAAAAG CFF8240_0404 375213 - 378287 + | CcmF/CcyK/CcsA family cytochrome c biogenesis protein TERM 356 378300 - 378269 - f 82 -5.4 -5.42975 | gap 1, opp_overlap 378270 378272 378278, overlap 378270 378272 TTATAGAAATAAAAA GTATAGTAAGAATTT ATA AAGTTCTTACTAT-C TTACTTGAAGCCCAT TERM 357 378270 - 378300 + F 70 -7.8 -3.33815 | opp_overlap 378269 378270 378272, overlap 378272 378278 TATAGAAATAAAAAG TATAGTAAGAATTT ATA AAGTTCTTACTATC TTACTTGAAGCCCAT TERM 358 378272 - 378298 + F 86 -10.4 -3.23853 | opp_overlap 378272 378269 378270, overlap 378270 378278 TAGAAATAAAAAGTA TAGTAAGAATTT ATA AAGTTCTTACTA TCTTACTTGAAGCCC TERM 359 378298 - 378272 - f 73 -8.2 -3.47541 | opp_overlap 378270 378272 378278, overlap 378269 378270 TAGAAATAAAAAGTA TAGTAAGAATTT ATA AAGTTCTTACTA TCTTACTTGAAGCCC TERM 360 378310 - 378322 + F 95 -9.1 -5.15117 | ACTATCTTACTTGAA GCCCA TTT TGGGC TTTTTTAAAATTTTA CFF8240_0406 378354 - 378794 + | hypothetical protein CFF8240_0405 379236 - 378784 - | phosphatidylglycerophosphatase A CFF8240_0407 380333 - 379257 - | ATP-sulfurylase family protein CFF8240_0408 381303 - 380413 - | response regulator receiver domain-containing protein ispDF 382418 - 381300 - | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein thiC 382570 - 383922 + | thiamine biosynthesis protein ThiC mrp 383919 - 384995 + | Mrp protein TERM 361 385723 - 385739 + G 73 -8.1 -3.59979 | AATTTAAACGGTGCA TTTGGAA TAC TTCCAAA TTTAGCATGGGACGC CFF8240_0412 385216 - 386406 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD CFF8240_0413 386419 - 388002 + | ABC transporter ATP-binding protein TERM 362 388069 - 388053 - T 72 -3.7 -5.22039 | opp_overlap 388067, overlap 388054 388064 388067 CGGAAATTTAAAAAA GCTTTAT ACG ATAAGGC TGGAAACTCCAGCCT TERM 363 388086 - 388064 - T 100 -15 -2.64375 | opp_overlap 388067, overlap 388053 388054 388067 AAAAGCTTTATACGA TAAGGCTGGA AAC TCCAGCCTTA TAAATGAAAATTATT TERM 364 388067 - 388083 + T 95 -12.3 -3.36175 | opp_overlap 388053 388064 388054 388067 AGCTTTATACGATAA GGCTGGA AAC TCCAGCC TTATAAATGAAAATT TERM 365 388083 - 388067 - T 95 -12.3 -3.4678 | opp_overlap 388067, overlap 388053 388064 388054 AGCTTTATACGATAA GGCTGGA AAC TCCAGCC TTATAAATGAAAATT sdhB 388837 - 388097 - | fumarate reductase iron-sulfur subunit CFF8240_0415 390797 - 388809 - | fumarate reductase flavoprotein subunit TERM 366 389196 - 389172 - GR 71 -8.5 -2.77895 | overlap 389171 TTCAGTTCTAAGAAG TGCGCCGTACG CAA CGCAAAGCGCA AGTTTAAGCATCATA CFF8240_0416 391570 - 390794 - | fumarate reductase cytochrome b-556 subunit TERM 367 391811 - 391833 + r 72 -5.1 -4.92239 | opp_overlap 391806 391811 GGTATCATAATAAAA TAAATTTTA TAAAC TAAAATTTA TTTTTCAGTTTTTAC TERM 368 391833 - 391811 - R 70 -5.1 -4.81212 | opp_overlap 391811, overlap 391806 GGTATCATAATAAAA TAAATTTTA TAAAC TAAAATTTA TTTTTCAGTTTTTAC lgt 392661 - 391831 - | prolipoprotein diacylglyceryl transferase TERM 369 392495 - 392511 + g 74 -2.3 -5.41143 | TCAAGAAGCGAGTCT GATATAT TTA ATTTATC TTTTTTTGCAAAATA CFF8240_0418 393205 - 392654 - | hypothetical protein CFF8240_0419 394405 - 393263 - | DNA polymerase IV 1, putative TERM 370 393922 - 393948 + g 75 -9.6 -2.73676 | opp_overlap 393930, overlap 393920 393920 393925 TGATTTTAGACGGTT TTGCTAAATTTG TTG CAAATTTAGCTA TAAATTTAGTTTCGC TERM 371 394630 - 394642 + r 74 -4.1 -5.29782 | TATAGAAAATAAAAC CGATT TCA AGTCG TTTTTTATAAGTATG TERM 372 395368 - 395389 + r 73 -4.5 -5.03715 | overlap 395357 TACTTCCATAACTTC TGGATTTTT GATT AAAATTCCA TTTTTTGCACCTACT CFF8240_0421 396779 - 396576 - | heavy metal transport/detoxification protein CFF8240_0422 397333 - 396776 - | acetyltransferase CFF8240_0423 397626 - 398867 + | serine transporter CFF8240_0424 398919 - 399626 + | hypothetical protein TERM 373 399983 - 399996 + G 70 -3.7 -4.84527 | ATGCTGGACGCGACA CAGGC GGAA GCCAG TTTTTCGTGTGTCAC CFF8240_0425 399652 - 400143 + | peptidyl-prolyl cis-trans isomerase TERM 374 400196 - 400164 - f 100 -12.3 -4.70879 | opp_overlap 400167 GTTAAATTTTAAAAA TAATTATTAGCTTCT TAC AGAGGCTAATAATTA AATAAAACATTAATA TERM 375 400167 - 400193 + F 95 -11.8 -3.06133 | opp_overlap 400164 AAATTTTAAAAATAA TTATTAGCTTCT TAC AGAGGCTAATAA TTAAATAAAACATTA TERM 376 400833 - 400821 - g 74 -6.3 -4.37092 | opp_overlap 400820, overlap 400808 400807 ACGCCTTTTATAAAA GCAAA TAC TTTGC AAGTTCTTTTTATGG CFF8240_0426 400347 - 401660 + | aerobic C4-dicarboxylate transport protein TERM 377 401689 - 401720 + F 80 -10.2 -2.92851 | overlap 401697 TATAATTTATCTTAT TTGGATTTGCGCTA TTTT TAGCGCTTATCCAA TCTATAAAATATTTT TERM 378 401697 - 401712 + F 79 -9 -3.35934 | overlap 401689 ATCTTATTTGGATTT GCGCTA TTTT TAGCGC TTATCCAATCTATAA TERM 379 402293 - 402281 - g 74 -6.3 -4.37092 | opp_overlap 402280, overlap 402268 402267 ACGCCTTTTATAAAA GCAAA TAC TTTGC AAGTTCTTTTTATGG CFF8240_0427 401804 - 403117 + | aerobic C4-dicarboxylate transport protein CFF8240_0428 403784 - 403179 - | Crp family transcriptional regulator CFF8240_0429 403986 - 406367 + | trimethylamine-N-oxide reductase 2 TERM 380 406620 - 406584 - f 91 -8.3 -4.88407 | opp_overlap 406591 406592 406595, overlap 406585 TTACGCAACTAAAAA CTTTAAACTTCCACTTT TAG AAAGTGTAAATTTAAAA AAAGACGGTGAAAAA TERM 381 406619 - 406585 - f 84 -9.6 -3.52321 | opp_overlap 406591 406592 406595, overlap 406584 TACGCAACTAAAAAC TTTAAACTTCCACTTT TAG AAAGTGTAAATTTAAA AAAAGACGGTGAAAA CFF8240_0431 407016 - 408665 + | histidine kinase A domain-containing protein CFF8240_0432 408662 - 409345 + | putative two-component regulator CFF8240_0433 409414 - 410100 + | disulfide isomerase TERM 382 410202 - 410232 + G 100 -12.1 -4.42062 | gap 1, overlap 410228 410230 TAATTATGGTCGTGG CTATGAGCGGACTA GTTA TAGTC-GCTCATAG TTTGTTTCAAAACTA CFF8240_0434 410111 - 410758 + | putative disulfide oxidoreductase TERM 383 410813 - 410798 - f 70 -7.5 -3.35438 | opp_overlap 410798 TACTACATTTTATAA GCCCG TAAATT CGGGC TTTTCTCCTTTTAAA TERM 384 410798 - 410813 + F 83 -7.5 -4.67635 | opp_overlap 410798 TACTACATTTTATAA GCCCG TAAATT CGGGC TTTTCTCCTTTTAAA TERM 385 411150 - 411138 - g 88 -7.7 -4.87665 | TGTGATCGATAAAAA CAGAG ATG CTCTG CATATAAGTGGCGGT CFF8240_0435 410926 - 412716 + | TonB-dependent receptor domain-containing protein CFF8240_0436 412798 - 414606 + | arylsulfotransferase TERM 386 414616 - 414663 + F 72 -3.6 -5.24449 | opp_overlap 414625, overlap 414625 AAATAGCTATTTACT TACAAAAAACATCTTAGAAGAG CTTG TTCATCTAAGATGTTTAATCTA TTTTTTAAATTTATA TERM 387 414625 - 414654 + F 80 -8.7 -4.04355 | opp_overlap 414625, overlap 414616 TTTACTTACAAAAAA CATCTTAGAAGAG CTTG TTCATCTAAGATG TTTAATCTATTTTTT TERM 388 414654 - 414625 - f 93 -8 -5.28176 | opp_overlap 414616 414625 TTTACTTACAAAAAA CATCTTAGAAGA GCTTGT TCATCTAAGATG TTTAATCTATTTTTT TERM 389 415030 - 415020 - g 84 -4 -5.69473 | GATAGTACAAAAAAA TCTT TAG AAGA GTTGGCTAAAAACGA CFF8240_0437 414756 - 416834 + | GTP-binding protein CFF8240_0438 416828 - 418627 + | GTP-binding protein TERM 390 418646 - 418665 + F 70 -2.1 -5.46657 | CGCTTTTTAGTTAAT GTGCGTA TTCTTT TAGGCAC TTTTTTATTAAACTA CFF8240_0439 418802 - 419668 + | hypothetical protein TERM 391 420832 - 420814 - g 72 -2.5 -5.28176 | gap 1, opp_overlap 420814 420816, overlap 420816 TTGATTGACAAAAAA GA-CTTTG CAGG CAAAGATC CTTTTGGTATTCCTA TERM 392 420936 - 420925 - g 76 -4.4 -5.09204 | ACATTTGAAGAAAAA GATG GTAT CATC TATACATCATTGTAT CFF8240_0440 419710 - 422304 + | nitrous-oxide reductase TERM 393 422336 - 422362 + F 100 -17.4 -4.37711 | opp_overlap 422341, overlap 422358 CAAAATCGGATTTTT GCAAAGGCGAGC TTT GCTCGTCTTTGC TTTTAAATTTAATAG TERM 394 422357 - 422341 - f 71 -7.9 -3.54424 | opp_overlap 422336 TCGGATTTTTGCAAA GGCGAGC TTT GCTCGTC TTTGCTTTTAAATTT TERM 395 422358 - 422403 + F 100 -14.6 -3.53091 | opp_overlap 422387, overlap 422336 CGAGCTTTGCTCGTC TTTGCTTTTAAATTTAATAG GCTAGA TTATTAAATTTAAAAGCAAA TTTAAAAAACAAACT TERM 396 422860 - 422849 - g 72 -5.8 -4.27886 | opp_overlap 422848 GCGGAAATACAGAAA GAGC TATA GCTC CGTATTATCTGTTGG CFF8240_0441 422431 - 423198 + | hypothetical protein CFF8240_0442 423195 - 424409 + | nitrous oxidase accessory protein CFF8240_0443 424402 - 425076 + | iron-sulfur protein CFF8240_0444 425079 - 425627 + | hypothetical protein CFF8240_0445 425624 - 426073 + | hypothetical protein TERM 397 426184 - 426152 - g 95 -8.6 -4.89339 | gap 1, opp_overlap 426152 426151 426149 426161, overlap 426142 426140 AAGTACCGATAAAAA CGGTAAAAAGCGC CCAAGCAT GCGCTTTT-ACCG CTATTTTATAATGAT CFF8240_0446 426078 - 426974 + | NapH/MauN family ferredoxin-type protein CFF8240_0447 426987 - 427640 + | ABC transporter, ATP-binding protein TERM 398 428037 - 428050 + G 86 -5.3 -5.59357 | opp_overlap 428037 TAAAAGGCGTAGAGA TACCA TGGG TGGTA TTTTTTTACTATACT CFF8240_0448 427700 - 428464 + | ABC-type transport system involved in multi-copper enzyme maturation, permease component CFF8240_0449 428461 - 428916 + | hypothetical protein TERM 399 429358 - 429389 + T 75 -7.7 -3.93963 | opp_overlap 429373 GGTGTGAGCATTGAC TTTTATATAAAAA GCTAAA TTTTTATATAAAA TTTATAGCTGCTCGT CFF8240_0451 430682 - 429465 - | putative putative two-component sensor TERM 400 429720 - 429741 + g 70 -2.4 -5.252 | overlap 429714 429722 TTGATAGTCGTTATA TTTTATAG CATTAT CTATAAGA TTTTTTATAGCAATA CFF8240_0452 431355 - 430687 - | response regulator ompr CFF8240_0453 432466 - 431369 - | nickel-dependent hydrogenases B-type cytochrome subunit family protein TERM 401 432192 - 432212 + g 82 -3.3 -5.64274 | overlap 432195 GCTATACTTGATGCC GGATTATGC CCC GTATAATGC TTTTTTTGTGAATAC TERM 402 432415 - 432405 - G 73 -4 -5.20781 | opp_overlap 432405, overlap 432400 TATGATAAAATAAAA CTTA TTA TAAG TGTTATATGACAAAA CFF8240_0454 432965 - 432459 - | putative diheme cytochrome c CFF8240_0455 433400 - 432975 - | hypothetical protein TERM 403 433649 - 433630 - R 82 -9.3 -3.43246 | opp_overlap 433633, overlap 433625 TAAAAAACAATTCAA GGAGCCT ATTTAA AGGCTCC TCTAGCAAAAAACTA CFF8240_0456 437194 - 433700 - | surface array protein TERM 404 435780 - 435796 + g 88 -7.3 -4.94992 | AGAGTTAGAGCTCCA GTTGCGT CTA ACGTAAC TTTTTCTACGTTTGC CFF8240_0457 438783 - 437482 - | SapF CFF8240_0458 440056 - 438773 - | sape CFF8240_0459 441807 - 440056 - | hypothetical protein TERM 405 440194 - 440204 + g 71 -5.4 -4.53705 | overlap 440186 CAGCTGACCGGCATT TAGC ACG GCTA TTTTATCTACGGCTT TERM 406 440834 - 440850 + g 74 -5.9 -4.56597 | TCTCCTCTTGGATCA GGTAAAC TTA GTTTATC TTTTTCAACAGGAAA CFF8240_0460 442936 - 441794 - | SapC CFF8240_0461 443425 - 446250 + | surface layer protein SapB9 TERM 407 446468 - 446488 + T 100 -14.1 -3.43985 | opp_overlap 446468 446471, overlap 446471 GTTTTTTTGCTAAAA GAAGTCGGA TTT TCCGACTTC TTGATATATTATTTA TERM 408 446488 - 446468 - T 100 -14.1 -4.07568 | opp_overlap 446468 446471, overlap 446471 GTTTTTTTGCTAAAA GAAGTCGGA TTT TCCGACTTC TTGATATATTATTTA TERM 409 446471 - 446485 + T 89 -10 -3.82807 | opp_overlap 446468 446471, overlap 446468 TTTTTGCTAAAAGAA GTCGGA TTT TCCGAC TTCTTGATATATTAT TERM 410 446485 - 446471 - T 91 -10 -4.17048 | opp_overlap 446471 446468, overlap 446468 TTTTTGCTAAAAGAA GTCGGA TTT TCCGAC TTCTTGATATATTAT TERM 411 446930 - 446911 - T 82 -9.3 -3.37556 | opp_overlap 446914, overlap 446906 TTTAAAACAATTCAA GGAGCCT ATTTAA AGGCTCC TCTAGCAAAAAACTA CFF8240_0462 450305 - 446985 - | surface array protein CFF8240_0463 451998 - 450610 - | hypothetical protein TERM 412 450937 - 450951 + g 73 -8.6 -3.16534 | TTTGTCATTTTTTCT TGCGAT AAA ATCGCA TTCACTGTCATTAGT TERM 413 452188 - 452151 - R 84 -5.7 -5.22943 | gap 1, opp_overlap 452159 452162, overlap 452154 452159 452162 ATTAAATTTAAAAAA TAACT-CAAGAAGTCGGA TTT TCCGACTTCTTTTAGCAA AAAACCATATACTAT TERM 414 452185 - 452154 - R 100 -9.6 -4.68528 | gap 1, opp_overlap 452159 452162, overlap 452151 452159 452162 AAATTTAAAAAATAA CT-CAAGAAGTCGGA TTT TCCGACTTCTTTTAG CAAAAAACCATATAC TERM 415 452159 - 452179 + r 100 -14.1 -4.07568 | opp_overlap 452159 452154 452151 452162, overlap 452162 TAAAAAATAACTCAA GAAGTCGGA TTT TCCGACTTC TTTTAGCAAAAAACC TERM 416 452179 - 452159 - R 100 -14.1 -3.43246 | opp_overlap 452159 452162, overlap 452154 452151 452162 TAAAAAATAACTCAA GAAGTCGGA TTT TCCGACTTC TTTTAGCAAAAAACC TERM 417 452162 - 452176 + r 91 -10 -4.17048 | opp_overlap 452162 452159 452154 452151, overlap 452159 AAAATAACTCAAGAA GTCGGA TTT TCCGAC TTCTTTTAGCAAAAA TERM 418 452176 - 452162 - R 89 -10 -3.80464 | opp_overlap 452159 452162, overlap 452159 452154 452151 AAAATAACTCAAGAA GTCGGA TTT TCCGAC TTCTTTTAGCAAAAA TERM 419 452214 - 452233 + r 76 -8 -3.74526 | opp_overlap 452214 452229, overlap 452207 452228 ACTATCTATTAAGGA GCTTAATT TAGA AATTAAGC TTGTTCGCTTAGTGC CFF8240_0464 456001 - 452228 - | surface array protein TERM 420 454590 - 454606 + g 88 -7.3 -4.94992 | AGAGTTAGAGCTCCA GTTGCGT CTA ACGTAAC TTTTTCTACGTTTGC TERM 421 460138 - 460162 + r 73 -7.9 -3.74792 | opp_overlap 460138 ATAAATTTAATGATA GCAGATTGATG ATG TATCGGTCTGC TTTAAATGTATGATG CFF8240_0468 461027 - 460611 - | hypothetical protein TERM 422 460977 - 460963 - G 75 -7.2 -4.15565 | opp_overlap 460963 TTCATTATGCCAAAA TGAGTT AAG AACTCA TCTATGATATCAAGT TERM 423 461850 - 461836 - g 72 -2.8 -5.252 | overlap 461838 GACTCTTATAAAAAA TTCTCT AAA AGAGTA TGCGGACGAAGTAAA panB 461114 - 461908 + | 3-methyl-2-oxobutanoate hydroxymethyltransferase CFF8240_0470 461892 - 462203 + | hypothetical protein TERM 424 462327 - 462313 - g 74 -2.2 -5.46657 | TAGGTCAAGAAAAAA TCAAAT CAA ATTTAA AAGTATTCATAAAAG ruvB 462213 - 463244 + | Holliday junction DNA helicase B TERM 425 463447 - 463437 - g 75 -8.2 -3.86897 | TTTACGTTTTACAAA CGGC AAA GCCG CACTTTCAGCCGCCA CFF8240_0472 463237 - 464340 + | acid membrane antigen A CFF8240_0474 465407 - 466147 + | ABC transporter, ATP-binding protein CFF8240_0475 466137 - 467051 + | putative ABC transport system periplasmic substrate-binding protein TERM 426 467516 - 467493 - g 70 -4.6 -4.66833 | TCCTAAGCGCAAAAA CTACTACG ACAAGTAG CGTAGCAG AAGCTTTAAACGCCT CFF8240_0476 467048 - 467584 + | hypothetical protein CFF8240_0477 467990 - 467586 - | putative metalloprotease TERM 427 468356 - 468337 - R 82 -9.3 -3.37556 | opp_overlap 468340, overlap 468332 TTTAAAACAATTCAA GGAGCCT ATTTAA AGGCTCC TCTAGCAAAAAACTA CFF8240_0478 471737 - 468408 - | surface layer protein SapA12 CFF8240_0479 472242 - 471970 - | addiction module antitoxin CFF8240_0480 472483 - 472235 - | hypothetical protein TERM 428 472604 - 472580 - R 71 -7.8 -3.66908 | opp_overlap 472580, overlap 472576 TGGTTGGAAAATTAA GGAGCCATGC TATAT GCAAAGCTCC TTTTAGCAAAAAAAC CFF8240_0481 475494 - 472729 - | surface array protein TERM 429 473458 - 473479 + g 73 -4.3 -4.99035 | overlap 473459 473462 TATCTTTAAGCCTTT AGTTGCAGC TCCG GCTGCTACG TTTTTGTCTCCCTGA TERM 430 473459 - 473478 + g 71 -7.8 -3.58698 | overlap 473458 473462 ATCTTTAAGCCTTTA GTTGCAGC TCCG GCTGCTAC GTTTTTGTCTCCCTG TERM 431 475737 - 475747 + G 70 -4 -4.84311 | AGCAGTAACTATAGC TATC TTA GATA TTTTATTATCTAAAA CFF8240_0482 475711 - 477285 + | hypothetical protein TERM 432 477363 - 477383 + G 84 -11.2 -3.01791 | opp_overlap 477358 477363 TTTAAAAATATTCAA GGAGCTAG TTCTC CTAGCTCC TCTTAGCAAAAAACT TERM 433 477383 - 477363 - g 87 -11.2 -3.32832 | opp_overlap 477363, overlap 477358 TTTAAAAATATTCAA GGAGCTAG TTCTC CTAGCTCC TCTTAGCAAAAAACT CFF8240_0483 477273 - 477389 + | hypothetical protein TERM 434 477547 - 477521 - T 78 -9.6 -3.06054 | opp_overlap 477526, overlap 477526 TAAATTTAGACAAAT TAAAAGCCTTAA AAA TTAAGGCTTTTT TATCAAGCAATTACT TERM 435 477526 - 477542 + T 100 -9.5 -5.24129 | opp_overlap 477521 477526 TTAGACAAATTAAAA GCCTTAA AAA TTAAGGC TTTTTTATCAAGCAA TERM 436 477542 - 477526 - T 100 -9.5 -4.65153 | opp_overlap 477526, overlap 477521 TTAGACAAATTAAAA GCCTTAA AAA TTAAGGC TTTTTTATCAAGCAA CFF8240_0484 480387 - 477568 - | hypothetical protein TERM 437 481038 - 481058 + G 83 -9.7 -3.89346 | GATGATGCACTCTTT GGCGCTTGA TTA TCAAGCTCC TTTATACGGTAGACG TERM 438 481315 - 481301 - g 71 -7.8 -3.63968 | opp_overlap 481300 481301, overlap 481293 TTTTAAATTCCGAAA TCACGG AAC CCGCGA GTTATTTTAGTATAC CFF8240_0485 480544 - 481908 + | ATPase TERM 439 482072 - 482053 - T 82 -9.3 -3.4174 | opp_overlap 482056, overlap 482048 ATAAAAACAATTCAA GGAGCCT ATTTAA AGGCTCC TCTAGCAAAAAACTA CFF8240_0486 485447 - 482127 - | surface array protein CFF8240_0487 485947 - 486723 + | surface array protein TERM 440 488233 - 488252 + G 79 -9.3 -3.43246 | opp_overlap 488236, overlap 488228 TAGTTTTTTGCTAGA GGAGCCT TTAAAT AGGCTCC TTGAATTGTTTTTTA CFF8240_0489 488225 - 488350 + | hypothetical protein TERM 441 488639 - 488619 - T 100 -14.1 -3.43985 | opp_overlap 488619 488622, overlap 488622 TAAATAATATATCAA GAAGTCGGA AAA TCCGACTTC TTTTAGCAAAAAAAC TERM 442 488619 - 488639 + T 100 -14.1 -4.07568 | opp_overlap 488619 488622, overlap 488622 TAAATAATATATCAA GAAGTCGGA AAA TCCGACTTC TTTTAGCAAAAAAAC TERM 443 488622 - 488636 + T 91 -10 -4.17048 | opp_overlap 488619 488622, overlap 488619 ATAATATATCAAGAA GTCGGA AAA TCCGAC TTCTTTTAGCAAAAA TERM 444 488636 - 488622 - T 89 -10 -3.82807 | opp_overlap 488622 488619, overlap 488619 ATAATATATCAAGAA GTCGGA AAA TCCGAC TTCTTTTAGCAAAAA CFF8240_0490 492574 - 488696 - | surface array protein TERM 445 491160 - 491176 + g 88 -7.3 -4.94992 | AGAGTTAGAGCTCCA GTTGCGT CTA ACGTAAC TTTTTCTACGTTTGC TERM 446 492838 - 492864 + r 74 -8.2 -3.57587 | opp_overlap 492836 492835, overlap 492836 492863 AAGAATGATAAATTT TGCTATATAAAT TTA ACTTATATAGCA TATTATTTAGATAAT CFF8240_0491 494045 - 492900 - | glycosyl transferase, group 1 TERM 447 492989 - 493023 + g 76 -2.5 -5.56112 | gap 1, opp_overlap 492997, overlap 492992 TAAGACCGTTTTTTT TCATTATAGATAATTT ATCT GAATTATTTATAA-GA TTTTTTAATTTTTCT TERM 448 493522 - 493508 - G 85 -8.6 -4.11585 | ATCCATTATAAATAA CCGATA TTT TATCGG CTGAGATATTTAGCT TERM 449 493522 - 493536 + g 76 -2.8 -5.42265 | ACCGATATTTTATCG GCTGAG ATA TTTAGC TTTTTTATAATTTCA TERM 450 493737 - 493756 + g 73 -4.4 -4.99056 | AAAATTTGGTTGGAA GTATAGAT CTAT ATTTATAC TTTTTACTTCTCTTA CFF8240_0492 496273 - 494042 - | mannosyltransferase A TERM 451 494519 - 494531 + g 72 -4.9 -4.82855 | TATAGTTCCTACTGC TAGAA AAG TTCTA TTTTTAAATTTAATA CFF8240_0493 496461 - 496276 - | hypothetical protein CFF8240_0494 497645 - 496461 - | ABC transporter CFF8240_0495 498406 - 497642 - | putative ABC-2 type transport system permease protein CFF8240_0496 498593 - 499708 + | glycosyl transferase, group 1 TERM 452 500711 - 500721 + GT 83 -6.8 -4.93316 | overlap 500708 TACTTCACTTGATGA GCTG CCT CAGC TTTTTAATGTTATTA CFF8240_0497 499680 - 500993 + | undecaprenyl-phosphate galactosephosphotransferase, putative radA 502337 - 500997 - | DNA repair protein RadA ftsY 503206 - 502337 - | signal recognition particle-docking protein FtsY CFF8240_0500 503760 - 503206 - | thiredoxin TERM 453 503263 - 503278 + g 73 -7.6 -3.71873 | AGGAACCATTCCAGT GTATGC ATTT GCATAC TTTCCATCTGGATAA TERM 454 504311 - 504330 + GH 73 -4.3 -4.96848 | GAAAAAATTTGCAGT TTACACG ATATAA CGTGTGA TTTTTATATAACCCC CFF8240_0501 503813 - 504442 + | 5,10-methenyltetrahydrofolate synthetase TERM 455 504951 - 504931 - gf 80 -4 -5.57054 | overlap 504943 AAGAAGCGAAAAAAA GAGCAAAT TATAT ATTAGCTC AAGCTACTAGCAGAT TERM 456 505654 - 505614 - gf 88 -10.4 -3.36492 | opp_overlap 505627, overlap 505615 GCTTTAAGTGTAGAA TGTGCCGCAGTATGTGCA GCGGA TGCACTTTCTGCAGCACG TCCCGGAGCTAGAAG TERM 457 505653 - 505615 - gf 100 -13.9 -2.61681 | opp_overlap 505627, overlap 505614 CTTTAAGTGTAGAAT GTGCCGCAGTATGTGCA GCGGA TGCACTTTCTGCAGCAC GTCCCGGAGCTAGAA CFF8240_0502 504375 - 505928 + | phosphodiesterase CFF8240_0503 505941 - 506525 + | hypothetical protein TERM 458 506905 - 506921 + G 84 -8.1 -4.47158 | opp_overlap 506905 506904 506907 TAGTATGAAAAAATT TAGCATT ATA AATGCTA TTTGTTCTATATTAT CFF8240_0504 506534 - 507103 + | integral membrane protein CFF8240_0505 507100 - 508389 + | hypothetical protein TERM 459 508778 - 508754 - f 70 -8.7 -2.6583 | opp_overlap 508745 508755, overlap 508753 TAATTATCTAAAGAT CTGTTTTAGCT CTA AGCTAAAACAT TAAATTTAGATTGCT TERM 460 508755 - 508777 + F 95 -12.2 -3.30781 | opp_overlap 508754 508753, overlap 508745 AATTATCTAAAGATC TGTTTTAGCT CTA AGCTAAAACA TTAAATTTAGATTGC TERM 461 508787 - 508802 + F 78 -7.6 -4.39414 | opp_overlap 508787, overlap 508745 AAAACATTAAATTTA GATTGC TTTT GCAATC TTTGTCTTTAGTATT TERM 462 508929 - 508956 + F 88 -10.8 -3.14132 | opp_overlap 508929 TGCAAGTCGAACGGA GTATTAAGAGAG CTTG CTCTTTTAATAC TTAGTGGCGCACGGG TERM 463 508956 - 508929 - f 70 -8.6 -2.55074 | opp_overlap 508929 TGCAAGTCGAACGGA GTATTAAGAGAG CTTG CTCTTTTAATAC TTAGTGGCGCACGGG TERM 464 510340 - 510357 + F 76 -9.1 -3.07291 | opp_overlap 510340 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 465 511035 - 511051 + F 78 -8.1 -3.95435 | opp_overlap 511035 511031, overlap 511031 TTTAAGGCAAATGAA CACAATA TTT TATTGTG TTGTATTTTAGGCGG TERM 466 511051 - 511035 - f 74 -8.1 -3.57106 | opp_overlap 511031 511035, overlap 511031 TTTAAGGCAAATGAA CACAATA TTT TATTGTG TTGTATTTTAGGCGG TERM 467 511403 - 511386 - f 86 -9.9 -3.66803 | opp_overlap 511385 511384 GCGTAAGAGGGCAAA CCGTTAG TTTA CTAACGG GGTTGTAGGACTGCA TERM 468 514072 - 514086 + F 71 -7.2 -3.74872 | CTTCTTTTAAGAGCT CTAGTA GAC TACTAG TTTGATAGGCTGGGT TERM 469 514463 - 514410 - f 81 -8.5 -4.21974 | overlap 514398 CGATTATTTAACAAA CAGTGTTAAATAAGAGAATAGCTAA ACTA TTTTTTATTCTTTTATTTAACACTG CCCGTGGCTATACGT CFF8240_0510 514941 - 515345 + | hypothetical protein CFF8240_0511 515549 - 516634 + | methyl-accepting chemotaxis protein TERM 470 517032 - 517014 - g 74 -6.1 -4.46926 | opp_overlap 517013 GATGGTATTATAAAA CTATCAA AAAGG TTGATAG ATCTGCTTCCTTATC bioA 516735 - 518036 + | adenosylmethionine-8-amino-7-oxononanoate transaminase nth 518661 - 518029 - | endonuclease III TERM 471 518794 - 518820 + G 79 -8 -4.08216 | overlap 518791 518790 TAGCTTTAAGCTTAG CTGCTGCAGTTA GTT TAAATGCCGCAG TTTTGGCAACAGTAA TERM 472 518939 - 518927 - g 77 -4.9 -5.16841 | opp_overlap 518927 TGATATGAAGAAAAA TCTAT TGG ATAGA GTTATAGAAAGAAAG CFF8240_0514 518760 - 519569 + | foldase protein PrsA fbaA 519579 - 520643 + | fructose-bisphosphate aldolase TERM 473 520646 - 520669 + F 84 -8.9 -4.00476 | opp_overlap 520645 GAATAAAAATTAGAT TTTGGCGGC TTGTAT GCTGCCAAA TTTATGCTAAATTTA TERM 474 520716 - 520670 - f 100 -17.2 -3.54424 | opp_overlap 520670 520670 520681 520698, overlap 520681 520706 TTGTATGCTGCCAAA TTTATGCTAAATTTAATAATTT TAT AAATTTTTAAATTTAGCATAAA TTTAAGGAACTTTTT TERM 475 520670 - 520716 + F 100 -17.2 -3.5771 | opp_overlap 520670 520681 520706, overlap 520670 520681 520698 TTGTATGCTGCCAAA TTTATGCTAAATTTAATAATTT TAT AAATTTTTAAATTTAGCATAAA TTTAAGGAACTTTTT CFF8240_0516 520732 - 522057 + | hypothetical protein CFF8240_0517 522044 - 523048 + | chemotaxis protein MotB, putative TERM 476 523410 - 523400 - g 76 -4 -5.22039 | opp_overlap 523400 TTCAAATTTAAAAAA TATC GAC GATA TTTTAATTCCTGAGG TERM 477 523739 - 523754 + G 71 -7.6 -3.65353 | opp_overlap 523737 523739 TAAAGAGCTTAAAGA CTCAAC AAAT GTTGAG TTTGAGCTGCTTTAC CFF8240_0518 523038 - 523910 + | hypothetical protein hisD 523934 - 525220 + | histidinol dehydrogenase TERM 478 525357 - 525339 - g 74 -2.4 -5.41143 | overlap 525341 TAGTGCTCAAAAAAA TGCAAGTA AAG CACTTGAA AATATATCTGCTCAA CFF8240_0520 525277 - 526029 + | flagellin TERM 479 526073 - 526048 - T 95 -11.3 -4.11404 | opp_overlap 526048 TTTAGACGATATAAA GCGATATAGAC TAGA ATCTATATCGC TTTTATTTAATTTCC TERM 480 526048 - 526073 + T 100 -10.6 -5.04868 | opp_overlap 526048 TTTAGACGATATAAA GCGATATAGA CTAGAA TCTATATCGC TTTTATTTAATTTCC CFF8240_0521 527951 - 526080 - | RNA polymerase sigma factor RpoD CFF8240_0522 528108 - 528920 + | flagellar basal-body rod protein TERM 481 529648 - 529627 - g 75 -7.3 -4.19336 | AATTAGTTGAAGAAA TGACCGATC TTAT AACCGGTCA GCGCGCCTATGAGGC flgG 528939 - 529727 + | flagellar basal body rod protein FlgG TERM 482 529892 - 529882 - f 78 -2.6 -5.77856 | overlap 529861 AATAAATCAAAAAAA TTAT TAA ATAA TAAAAAATATAATGA TERM 483 530503 - 530493 - g 70 -4 -4.91977 | TATGAAAATATAAAA TCTA GTT TAGA TGATGCTATTTTGGC TERM 484 530827 - 530808 - g 91 -2.1 -6.17268 | GTAGAAGAAAAAAAA GTAGTAG ATTTTA CTCCTAC TGTGCAAAATATAAA CFF8240_0524 530025 - 531938 + | FTR1 family iron permease CFF8240_0525 531935 - 532456 + | hypothetical protein TERM 485 532491 - 532511 + F 77 -6.1 -4.81249 | opp_overlap 532478 TATAAATTTAAAAAG TCCGGCTGA TTT TTGGCTGGA TTTTTAAATTTAAAA TERM 486 533895 - 533908 + G 74 -2.4 -5.40072 | TTCAATTATATTTAT TACG GAAGGA CGTA TTTTTTTGAAAACCA CFF8240_0526 532629 - 533993 + | integral membrane protein CFF8240_0527 533998 - 535242 + | ABC transport permease protein-involved in lipoprotein release TERM 487 535857 - 535869 + G 72 -9.1 -2.7419 | opp_overlap 535849 TAAACTACGCCGAAG CCGCT ATA AGCGG TAGTTACGATAGTAT CFF8240_0528 535229 - 536359 + | integral membrane protein-permease component, involved in lipoprotein release CFF8240_0529 536362 - 537024 + | ABC transport protein CFF8240_0530 537021 - 537518 + | hypothetical protein TERM 488 537730 - 537704 - g 73 -7.4 -3.73914 | overlap 537711 ACTAGCTATGAAGAA TTGATAAGCGCT GTT AGCAGTTATCAA AAATTACTTCTTATA CFF8240_0531 537590 - 538561 + | peptidyl-arginine deiminase TERM 489 539020 - 539036 + G 76 -6.5 -4.55209 | opp_overlap 539020 539019 GATCTTGTGACAAAT GCGGCTA TTT TAGCGGC TTTGTTTGCTATATG CFF8240_0532 538558 - 539433 + | ferrous-iron efflux pump FieF CFF8240_0533 539430 - 540299 + | carbon-nitrogen family hydrolase TERM 490 540336 - 540300 - T 70 -7.7 -3.32993 | gap 1, opp_overlap 540302 540307, overlap 540303 540307 CGATTTATAGATTAA TTA-TAAACTGAGTTA TCTAAG TAACTCAGTTTACTAA TTCAAAAAAATAGTA TERM 491 540332 - 540303 - T 86 -11 -2.83345 | opp_overlap 540302 540307, overlap 540300 540307 TTTATAGATTAATTA TAAACTGAGTTA TCTAAG TAACTCAGTTTA CTAATTCAAAAAAAT TERM 492 540328 - 540307 - T 75 -7.4 -4.09215 | opp_overlap 540307 540302, overlap 540303 540300 TAGATTAATTATAAA CTGAGTTA TCTAAG TAACTCAG TTTACTAATTCAAAA TERM 493 540307 - 540328 + T 76 -8.1 -3.84246 | opp_overlap 540303 540300 540307, overlap 540302 TAGATTAATTATAAA CTGAGTTAT CTAA GTAACTCAG TTTACTAATTCAAAA gltS 541552 - 540338 - | sodium/glutamate symporter CFF8240_0535 542264 - 541644 - | hypothetical protein CFF8240_0536 543562 - 542240 - | mate efflux family protein TERM 494 543031 - 543018 - G 74 -6.7 -4.27316 | CCGCTTAATCCAAAA TTCGG AAGC CCGAA TAGTCCAAAAAGCGC CFF8240_0537 544431 - 543559 - | sensory trasnduction histidine kinase CFF8240_0538 545093 - 544425 - | sensory transduction regulator TERM 495 545171 - 545200 + H 73 -8.9 -2.55074 | overlap 545168 AATAGTATAATTTTT TTTGAATTTAAAA AATA TTTTAAATTCAAG TAGATTAAAGTTACG CFF8240_0539 545297 - 546595 + | major facilitator superfamily protein TERM 496 547931 - 547915 - g 73 -3.7 -5.1287 | opp_overlap 547915, overlap 547917 CGGATATTTAAAAAA CTTTTTG TTC CCAAAAG AGTTTTTAGATAAAC CFF8240_0540 546599 - 548533 + | ABC transporter ATP-binding protein uup TERM 497 549258 - 549272 + G 73 -7.2 -4.04319 | TTTCACTTGGCTTTG GAGTTA TGA TAACTC TTTCTAGCTTTGTAA CFF8240_0541 548543 - 549919 + | sodium-dependent transporter CFF8240_0542 549968 - 551167 + | M48 family peptidase TERM 498 551547 - 551534 - g 82 -5.3 -5.36314 | TAAAATACTAAAAAA CTGTA AATT TACAG CTACTGATATCAGCG CFF8240_0543 551154 - 551939 + | bifunctional methyltransferase TERM 499 552009 - 552039 + G 75 -4.7 -5.00616 | overlap 552011 CATAGGCGTGGAGAT TGCTATCGGGGCT TTTTT GGCTCCAATAGTA TTTTTTCCGACAAAA TERM 500 552205 - 552189 - g 74 -2.3 -5.52096 | AAATTTAATAAAAAA TAAAGAC GAG GTATTTA ACTTCAAATTTAGTA CFF8240_0545 551950 - 552429 + | putative integral membrane protein CFF8240_0544 552776 - 552426 - | hypothetical protein TERM 501 552842 - 552830 - R 82 -6.3 -5.1167 | AATTTAATATAAAAA GCTTT ATT AAAGC TGCTAATTTGTATAA TERM 502 553087 - 553114 + r 71 -7.1 -3.85909 | opp_overlap 553087 TTTTAGAAGTCAAAA CTTGCCTTG AAAGCATAGG CAAGGCAAG TTTAAGTTTAAATCA TERM 503 553114 - 553087 - R 76 -7.1 -4.3208 | opp_overlap 553087 TTTTAGAAGTCAAAA CTTGCCTTG AAAGCATAGG CAAGGCAAG TTTAAGTTTAAATCA CFF8240_0546 554464 - 553217 - | hypothetical protein CFF8240_0547 555102 - 554461 - | uracil-DNA glycosylase superfamily protein TERM 504 554551 - 554537 - G 83 -7.1 -4.7078 | TTAATGATCCAAAAA GCCGA ATAAG TCGGC ATGATAAGACTATTT TERM 505 554645 - 554667 + g 81 -7.8 -4.39166 | AAAAAAACATCTTTA CCAAAACTAA TGA TAAGTTTTGG TTTTACTATATCAAA TERM 506 554945 - 554959 + g 76 -2.8 -5.40625 | overlap 554947 CTACTTTTGCATAGT TCGCAA AGA TTGCAA TTTTTTATCTGCTCT CFF8240_0548 555615 - 555142 - | acetyltransferase amt 556965 - 555682 - | ammonium transporter CFF8240_0550 557313 - 556975 - | nitrogen regulatory protein P-II TERM 507 557471 - 557454 - H 80 -5.7 -5.08483 | opp_overlap 557454 TAAAAGCAAACAAAA CTTAAAA GGTT TTTTAAG TAATTATTTGATAAA rpmH 557520 - 557654 + | 50S ribosomal protein L34 rnpA 557675 - 558007 + | ribonuclease P protein component TERM 508 557995 - 558023 + F 77 -4.7 -5.22104 | TTTGAAAAAGGTGGA TTCCATAAAATGA AAG TAATTTTTTGGAA TTTTATTGTTTTTTA CFF8240_0553 558342 - 559937 + | putative inner membrane protein translocase component YidC TERM 509 560243 - 560230 - g 77 -3.1 -5.4182 | overlap 560241 AATGATAAACAAAAA GTAGA AAAA CCTAC AAAACCTGTAAATAT CFF8240_0554 559927 - 560880 + | hypothetical protein trmE 560877 - 562193 + | tRNA modification GTPase TrmE TERM 510 563565 - 563555 - g 79 -4.6 -5.33124 | opp_overlap 563555 AAGAATAAAAGAAAA CGGC AGA GCCA TTAGTATGGGTATGG purL 562212 - 564407 + | phosphoribosylformylglycinamidine synthase II TERM 511 564499 - 564479 - g 86 -5.3 -5.72616 | opp_overlap 564490, overlap 564480 564490 AGTTATATAAAAAAA CCCACCGTA AAT TTCGGCGGA AATTTTGATAATAGA CFF8240_0557 564407 - 565147 + | DnaJ domain-containing protein TERM 512 566527 - 566548 + G 93 -8.7 -4.70879 | overlap 566529 TATAGATCTAAGAGG CTCTTCGCT TGCA AGCGAAGCG TTTTTCCCGTTTAGA TERM 513 566529 - 566546 + G 75 -9.9 -2.6436 | overlap 566527 TAGATCTAAGAGGCT CTTCGCT TGCA AGCGAAG CGTTTTTCCCGTTTA purH 565175 - 566707 + | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase CFF8240_0559 566853 - 567251 + | hypothetical protein TERM 514 567268 - 567293 + G 81 -7.5 -4.36649 | CTTTTAAGTACGTTT GCGCCGCCT TTTAAACT AGTCGGCGC TTATTTTGTGATCTC CFF8240_0560 567244 - 568425 + | hypothetical protein CFF8240_0561 568422 - 568703 + | YitW TERM 515 568938 - 568924 - g 70 -4.3 -4.75967 | opp_overlap 568926, overlap 568928 AACTACAAAAAATAA CTTAG ATATG CTAAG CAAATCAATATTTCA TERM 516 569733 - 569723 - g 81 -8.2 -4.24285 | GAGATAGCGAATAAA GCCG CAT CGGC AAATAAAAAGTCATA CFF8240_0562 568793 - 570385 + | putative methyl-accepting chemotaxis protein TERM 517 570408 - 570435 + T 91 -10 -4.15453 | opp_overlap 570411, overlap 570403 TTTGTGCAAGTTGAA GTATCTCCAAAT ATTT GTTTGGGGATAC TTTTGGACTACATTA CFF8240_0563 571354 - 570443 - | D-alanine aminotransferase CFF8240_0565 571411 - 571917 + | hypothetical protein CFF8240_0564 573864 - 571903 - | hypothetical protein TERM 518 572960 - 572940 - G 71 -5.5 -4.4648 | overlap 572942 ATTTGGAGTATAAAA CATTCAAAG AAG CTCTGAATA TAAGGTATTGCGTAT TERM 519 573823 - 573811 - G 78 -7.7 -4.21408 | AAGGGCAAAACTAAA GGCAA AAT TTGCC GGATCGTATGTTTTT CFF8240_0566 574145 - 573864 - | hypothetical protein mraW 575065 - 574142 - | S-adenosyl-methyltransferase MraW CFF8240_0568 575174 - 575767 + | hypothetical protein TERM 520 576418 - 576402 - g 77 -5.2 -4.84529 | CTATAAATTTAAAAA CAAATC AGACG GATTTG GATATTTTGGCTTCT TERM 521 577010 - 576998 - g 72 -2.7 -5.30575 | overlap 576999 GAAAAAGGTAAAAAA CTTCT CGA AGAAA AAGCAAAACAATCTT CFF8240_0569 575888 - 577345 + | putative peptidyl-prolyl cis-trans isomerase D,-like protein ftsA 577351 - 578835 + | cell division protein FtsA TERM 522 579866 - 579854 - g 93 -9.1 -4.62069 | opp_overlap 579853, overlap 579857 AAAAACAGTACAAAA CAGCC TGA GGCTG CTCCTGTGCCTGAAG ftsZ 578849 - 580003 + | cell division protein FtsZ CFF8240_0572 581961 - 580021 - | NLP/P60 TERM 523 580236 - 580250 + g 79 -5.7 -5.02231 | TACCCCAGCTATGAG CCGAT AAAAG ATCGG TTTTTGATATTTTTC TERM 524 580357 - 580375 + g 76 -4.5 -5.16572 | overlap 580359 GTCGCTAACTTTCTG CAGTGCT TTTGC AGCACCG TTTTTTGAGTTAAAT TERM 525 582735 - 582723 - g 71 -6.3 -4.17516 | TTTAAACGAGATAAA CTCTA ATT TAGAG ACGATAGTGGCTAAA CFF8240_0573 582019 - 583326 + | TPR domain-containing protein CFF8240_0574 583323 - 583793 + | putative periplasmic protein TERM 526 583863 - 583893 + T 75 -7.6 -3.91434 | overlap 583865 583888 TAATATATCAAAGTT TTCAGGGATATTGG GTT CCAAAATTCCTGTA TTTATAGGCTCATTT lolA 584354 - 583839 - | outer-membrane lipoprotein carrier protein TERM 527 583865 - 583891 + g 86 -10.2 -3.54 | overlap 583863 583888 ATATATCAAAGTTTT CAGGGATATTGG GTT CCAAAATTCCTG TATTTATAGGCTCAT TERM 528 585011 - 584996 - g 91 -4.7 -5.77571 | opp_overlap 584994 ATGAAAAAAGAAAAA TCGCT TATAAT AGCGA TATAACTTATGGTAC secA 584488 - 587055 + | preprotein translocase subunit SecA TERM 529 587761 - 587732 - g 72 -5.9 -4.4267 | TCTCAAAATCCAAAA CAAGATATCAT AAAGTTAA ACGATATCTTG CCGCCGGGTCAAAAA CFF8240_0577 587048 - 588247 + | permease, putative CFF8240_0578 588543 - 588250 - | N-terminal methylation CFF8240_0580 590164 - 588992 - | putative integral membrane protein CFF8240_0581 591329 - 590187 - | putative transport protein CFF8240_0582 591776 - 591333 - | phosphoribosyltransferase TERM 530 591699 - 591711 + g 85 -4.1 -5.72118 | ACCTAAAATTGCGTC CGGAT CAA ATTCG TTTTTTATATTTTTT CFF8240_0583 593117 - 591786 - | xanthine/uracil permease family protein TERM 531 592264 - 592283 + g 76 -3.6 -5.32565 | overlap 592250 CTAGATATCGCGTCG CTTTCTAA ATTT TTAGCAAG TTTTTTCGTTCCTTC CFF8240_0584 594209 - 593127 - | hypothetical protein TERM 532 594263 - 594274 + H 93 -4.4 -6.07627 | TTATATGCTAATAGG GCTT AAAA AAGC TTTTTTTTTGGAAAT TERM 533 596211 - 596197 - g 88 -5.8 -5.63504 | AATCTTATAAAAAAA CAAAAA GAG TTTTTG GAACTATCTAAAGAC TERM 534 596458 - 596469 + G 74 -3 -5.252 | GAGATTTTCGAGCTT TTTG ATAG CAAA TTTTTTATAAAACTA CFF8240_0585 594319 - 596838 + | GlnD family protein glmS 596849 - 598666 + | D-fructose-6-phosphate amidotransferase TERM 535 598862 - 598883 + G 73 -8.1 -3.69483 | gap 1, overlap 598874 598876 ATTTTTGGGATGTCG GCAAG-GCTA TGA TAGCACTTGC TATTTTGAGTGCCGT TERM 536 598946 - 598962 + G 74 -5.7 -4.67168 | opp_overlap 598948, overlap 598948 TTACTGGTGAGATGA CACGCTG GGG CGGCGAG TTTTTAGAGCTTTTT CFF8240_0587 598804 - 600021 + | putative inner membrane protein CFF8240_0588 600021 - 600257 + | hypothetical protein TERM 537 600273 - 600294 + G 86 -8.1 -4.7173 | opp_overlap 600273 ATCGATATGAGCAAA TTTGGGCTA GTCT TAGCTCAAA TTTTTAAATCTAGTA CFF8240_0589 600264 - 600431 + | hypothetical protein murI 601195 - 600434 - | glutamate racemase TERM 538 601042 - 601028 - G 70 -7.2 -3.71924 | CAAATTAGTCAAGAA TTGAAC ACA GTTCAA ACAAAGGCGGATTAT TERM 539 601073 - 601088 + g 71 -3.2 -5.18726 | CTCGTCTTTACTTTT TGTGCC ATAC GGTGCA TTTTTGTTGTCGGCA CFF8240_0591 603001 - 601199 - | 3-polyprenyl-4hydroxybenzoate decarboxylase TERM 540 602167 - 602180 + g 70 -2.4 -5.28755 | ATCCTGTGTGATCTC CGAA TTTTCC TTCG TTTTTTAGTCTATTT TERM 541 603602 - 603578 - H 70 -8.7 -2.6583 | opp_overlap 603569 603579, overlap 603577 TAATTATCTAAAGAT CTGTTTTAGCT CTA AGCTAAAACAT TAAATTTAGATTGCT TERM 542 603579 - 603601 + H 95 -12.2 -3.30781 | opp_overlap 603578 603577, overlap 603569 AATTATCTAAAGATC TGTTTTAGCT CTA AGCTAAAACA TTAAATTTAGATTGC TERM 543 603611 - 603626 + H 78 -7.6 -4.39414 | opp_overlap 603611, overlap 603569 AAAACATTAAATTTA GATTGC TTTT GCAATC TTTGTCTTTAGTATT TERM 544 603780 - 603753 - H 70 -8.6 -2.55074 | opp_overlap 603753 TGCAAGTCGAACGGA GTATTAAGAGAG CTTG CTCTTTTAATAC TTAGTGGCGCACGGG TERM 545 603753 - 603780 + H 88 -10.8 -3.14132 | opp_overlap 603753 TGCAAGTCGAACGGA GTATTAAGAGAG CTTG CTCTTTTAATAC TTAGTGGCGCACGGG TERM 546 605164 - 605181 + H 76 -9.1 -3.07291 | opp_overlap 605164 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 547 605398 - 605435 + H 83 -10.3 -2.8978 | opp_overlap 605398 605431, overlap 605397 GCCCACCAGGTAAAA TTTAATTTAAGAATTAA AAAT TTAGTTCTTAAATTAGA CTTTAGTCTAAACGT TERM 548 605866 - 605882 + H 78 -8.1 -3.95435 | opp_overlap 605862 605866, overlap 605862 TTTAAGGCAAATGAA CACAATA TTT TATTGTG TTGTATTTTAGGCGG TERM 549 605882 - 605866 - H 74 -8.1 -3.57106 | opp_overlap 605866 605862, overlap 605862 TTTAAGGCAAATGAA CACAATA TTT TATTGTG TTGTATTTTAGGCGG TERM 550 606234 - 606217 - H 86 -9.9 -3.66803 | opp_overlap 606216 606215 GCGTAAGAGGGCAAA CCGTTAG TTTA CTAACGG GGTTGTAGGACTGCA TERM 551 608903 - 608917 + H 71 -7.2 -3.74872 | CTTCTTTTAAGAGCT CTAGTA GAC TACTAG TTTGATAGGCTGGGT TERM 552 609294 - 609241 - H 81 -8.5 -4.21974 | overlap 609229 CGATTATTTAACAAA CAGTGTTAAATAAGAGAATAGCTAA ACTA TTTTTTATTCTTTTATTTAACACTG CCCGTGGCTATACGT CFF8240_0596 609772 - 610176 + | hypothetical protein TERM 553 610367 - 610384 + F 70 -5.6 -4.35474 | ATTTTTGTATAATTT CACTTC CTTTTT GAAGTG TTGTTATTTTCTTTG TERM 554 611146 - 611162 + F 71 -4.3 -4.86954 | overlap 611136 TAGGTTCGAGCCCTA CACGGGG CAC CACTGTG TTATTTTTTATTATT CFF8240_0606 611374 - 612531 + | GGDEF family protein CFF8240_0607 612568 - 615453 + | hypothetical protein CFF8240_0608 616573 - 615482 - | competence/damage-inducible domain-containing protein CFF8240_0609 617297 - 616590 - | hypothetical protein TERM 555 616882 - 616896 + g 74 -2.2 -5.41787 | TCTATGCCCATGGAG TTATTT GAA AAGTAA TTTTTATCTTTTTTA ileS 617323 - 620073 + | isoleucyl-tRNA synthetase gatA 620173 - 621534 + | aspartyl/glutamyl-tRNA amidotransferase subunit A TERM 556 622245 - 622226 - g 73 -9.2 -2.88544 | opp_overlap 622224 622239 GGTCAGCTTGATAGA GCCGTGGC TTTA GCCAAGGC AGGTGTTGATGCTTT TERM 557 622943 - 622917 - g 76 -7.9 -3.92996 | opp_overlap 622914 TTGTAGAGATAACAA GCGCCGGACTC AAAGA GAGTCACGCGC ACGATGTTATAATAA guaB 621539 - 622990 + | inositol-5-monophosphate dehydrogenase metX 622990 - 624096 + | homoserine O-acetyltransferase CFF8240_0614 624087 - 624284 + | hypothetical protein TERM 558 624510 - 624496 - g 79 -3.6 -5.54894 | AATTTAGCAAAAAAA TACGAT CTC ATCATA GTTGCTCCGATTATT CFF8240_0615 624277 - 625083 + | carbon-nitrogen family hydrolase murC 625085 - 626383 + | UDP-N-acetylmuramate--L-alanine ligase TERM 559 626484 - 626496 + G 83 -6.9 -4.69027 | overlap 626488 626493 TATTATACTATTTTG CGGCG CAG CGCTG TTTTTAGCTGCATTT TERM 560 626595 - 626585 - g 84 -5.4 -5.4833 | TTATGCAAGAAAAAA GCAT AAA ATGC GGTGAATACGAAGTC CFF8240_0617 626380 - 626721 + | hypothetical protein TERM 561 626999 - 626983 - g 70 -2.3 -5.27923 | GAAGCTCATAAAAAA TTAAACT ATG AGATTAA AAAATACAGTTGTAA TERM 562 627523 - 627508 - g 74 -3.2 -5.27023 | overlap 627509 627520 ATGCCAAAAATAAAA CCGCTT TATC AAGCGC AATACGCTAAAGATA CFF8240_0619 626725 - 627741 + | NADPH dehydrogenase CFF8240_0618 628433 - 627738 - | nitrate transport ATP-binding protein NrtD CFF8240_0620 629202 - 628465 - | taurine transport system permease protein TauC TERM 563 628750 - 628765 + g 71 -3.3 -5.16237 | GCTAAGCACTTGCCA CTTTG AAGCGC CAAAG TTTTTTGATACGATT CFF8240_0621 630121 - 629204 - | twin-arginine translocation pathway signal CFF8240_0622 631182 - 630118 - | acyl-CoA dehydrogenase TERM 564 630831 - 630844 + g 82 -3.1 -5.71712 | gap 1, overlap 630831 630833 630837 CGCCGTTAGTTCTTG CC-GCT TTT AGCCGG TTTTTTTCTATACCG CFF8240_0623 631730 - 631200 - | hypothetical protein TERM 565 631534 - 631550 + g 71 -8.7 -3.03443 | opp_overlap 631534 TCTTCTCCAAGTAAA GTAGGCG GCT CGTCTAC TATGTATGCTGGTAG TERM 566 631759 - 631769 + H 74 -4 -5.31275 | opp_overlap 631759, overlap 631748 TTAATATATTTAAAA GATA TAC TATC TTTTTTATACTGAAA TERM 567 632023 - 632007 - g 75 -5.1 -4.99035 | TTAGCTAGAGAAAAA CCGCT TTTTATG AGCGG AGACAGCAAGTTGAA TERM 568 633465 - 633453 - g 74 -6.3 -4.37737 | opp_overlap 633453 633452, overlap 633448 GAATTAAAAATCAAA TTGCA TGA TGCAA ATTTAAAAGAGGAGA CFF8240_0624 631932 - 634133 + | recombination and DNA strand exchange inhibitor protein TERM 569 634425 - 634414 - g 76 -4.4 -5.03227 | opp_overlap 634414 634411 ATAGTATAAATAAAA GACT TAAA AGTC TTGATTTTTTGTTTT TERM 570 635493 - 635477 - g 76 -3.7 -5.24799 | overlap 635479 CGATAAAGATAAAAA CGTCATA AAA TATGAAG CTCTAGTTAGAATAG CFF8240_0625 634200 - 636110 + | diguanylate cyclase/phosphodiesterase TERM 571 636609 - 636619 + G 77 -5.4 -4.99043 | CCTTTTGCGGTAAGT CGTT CAA AACG TTTTATTTCTCAAGG CFF8240_0626 636120 - 636722 + | amino acid transporter LysE dapE 636725 - 637822 + | succinyl-diaminopimelate desuccinylase TERM 572 638595 - 638613 + G 75 -9.6 -2.6027 | overlap 638598 CGCATTCGCTATTTT TGGCCCAT AAA ATGGGCTA TGGGTTGGATTTTGG CFF8240_0628 637904 - 639256 + | malate:quinone oxidoreductase TERM 573 639475 - 639447 - g 79 -9 -3.85909 | overlap 639448 639466 TCATCTAAATTTAAA GTTTTAGGGCTA GATAT TAGCCCTAAAAT GGCCGAAATTTGTAG TERM 574 639474 - 639448 - g 86 -12.5 -2.91063 | overlap 639447 639466 CATCTAAATTTAAAG TTTTAGGGCTA GATAT TAGCCCTAAAA TGGCCGAAATTTGTA CFF8240_0629 639240 - 639959 + | hypothetical protein pyk 640018 - 641466 + | pyruvate kinase TERM 575 642664 - 642652 - g 74 -6.3 -4.41206 | AATGAGTTCATAAAA TCTCA CGA TGAGA TACTAAAACAGTCTT CFF8240_0631 641482 - 642705 + | processing protease TERM 576 643225 - 643212 - g 71 -5.3 -4.57057 | ATAGCACAAAAATAA TTGCA AATT TGCAA AACGATCCGAGTACT CFF8240_0632 642695 - 644503 + | ATP-dependent DNA helicase RecG CFF8240_0633 644762 - 646105 + | 3-deoxy-7-phosphoheptulonate synthase TERM 577 646161 - 646196 + T 100 -14.4 -4.26792 | opp_overlap 646144 646161, overlap 646193 AATTTAAAGAATAAA TTTAGTTGGATTATGA AATT TTATAATCCAACTAAA TTTTGAAATTTATAT TERM 578 646196 - 646161 - T 100 -12.2 -4.59489 | opp_overlap 646161 646193, overlap 646144 AATTTAAAGAATAAA TTTAGTTGGATTATGA AATT TTATAATCCAACTAAA TTTTGAAATTTATAT proA 647490 - 646267 - | gamma-glutamyl phosphate reductase TERM 579 647269 - 647285 + g 93 -9.5 -4.37013 | ATTTTTTATGGAGTT GCATAGA TTT TCTATGC TTTTACTAGTTAATT CFF8240_0635 647569 - 648522 + | oxidoreductase TERM 580 648566 - 648577 + G 89 -3 -5.79588 | CTCAAATTTTATTTT TAGT CGGT ACTA TTTTTTTCATTTTAG TERM 581 648688 - 648718 + G 85 -8.5 -4.18018 | opp_overlap 648688 648687 648685 648690 TATATCAGTAAAGAC GAGTTAGATAAAT TAGGT AGTTATCTAACTC TTTTAAATAACAGAA TERM 582 649910 - 649889 - g 84 -3.9 -5.59357 | ACGATATCAAAAAAA TTCAAAATT ATGA AATTTTAAA TAACATGATAACTAA CFF8240_0636 648532 - 650454 + | putative vesicular transport factor Uso1p TERM 583 650473 - 650501 + G 73 -4.6 -5.00642 | opp_overlap 650475 650477 650489, overlap 650475 TATTTCAACTAAAAG AAGGGTATCGTT ATAAC AGCGATACTCTG TTTTTATATGACTTC TERM 584 650475 - 650499 + G 75 -7.2 -4.11744 | opp_overlap 650475 650477 650489, overlap 650473 TTTCAACTAAAAGAA GGGTATCGTT ATAAC AGCGATACTC TGTTTTTATATGACT CFF8240_0637 650451 - 651146 + | methyltransferase small CFF8240_0638 651140 - 651511 + | hypothetical protein TERM 585 651725 - 651705 - g 83 -6.9 -4.8083 | opp_overlap 651705, overlap 651696 651698 CAAGACGACTAAAAA GCCTATTTT TTT AAAAGAGGC TCTTAAGATAGCTTT CFF8240_0639 651622 - 652782 + | hypothetical protein trpC 652779 - 653555 + | indole-3-glycerol phosphate synthase CFF8240_0641 653555 - 654061 + | Hit family protein TERM 586 654224 - 654210 - g 76 -4.2 -5.17507 | opp_overlap 654211 654217, overlap 654211 AAAAGCTAATAAAAA TGAGCT GCA AGCTCT GTTTGGTTTGAAAAA TERM 587 654223 - 654211 - g 71 -7.7 -3.68064 | opp_overlap 654211 654217, overlap 654210 AAAGCTAATAAAAAT GAGCT GCA AGCTC TGTTTGGTTTGAAAA TERM 588 654211 - 654223 + G 71 -7.7 -3.62354 | opp_overlap 654211 654210, overlap 654217 AAAGCTAATAAAAAT GAGCT GCA AGCTC TGTTTGGTTTGAAAA CFF8240_0642 654058 - 654795 + | hypothetical protein CFF8240_0644 656773 - 657564 + | hypothetical protein CFF8240_0645 657522 - 657854 + | hypothetical protein CFF8240_0646 657895 - 658101 + | hypothetical protein CFF8240_0647 658082 - 658315 + | carbamoyl-phosphate synthase large chain CFF8240_0648 658826 - 658413 - | hypothetical protein CFF8240_0649 660394 - 658823 - | hypothetical protein TERM 589 660447 - 660495 + r 70 -5.6 -4.32951 | opp_overlap 660449 660450 660469, overlap 660449 660451 660484 TACCGATAAGCCCTA AAGCCTTTTAAACGTTTTTAAA CGCCT TTTAAAAGCGTTTAAAAGTATG TTTTAAATATTCTTT TERM 590 660449 - 660493 + r 76 -8.2 -3.74703 | opp_overlap 660449 660450 660469, overlap 660447 660451 660484 CCGATAAGCCCTAAA GCCTTTTAAACGTTTTTAAA CGCCT TTTAAAAGCGTTTAAAAGTA TGTTTTAAATATTCT TERM 591 660492 - 660450 - R 77 -9.5 -2.77233 | opp_overlap 660449 660447 660451 660484, overlap 660449 660469 CGATAAGCCCTAAAG CCTTTTAAACGTTTTTAAA CGCCT TTTAAAAGCGTTTAAAAGT ATGTTTTAAATATTC TERM 592 660451 - 660491 + r 100 -15.2 -3.44279 | opp_overlap 660450 660449 660469, overlap 660449 660447 660484 GATAAGCCCTAAAGC CTTTTAAACGTTTTTAAA CGCCT TTTAAAAGCGTTTAAAAG TATGTTTTAAATATT CFF8240_0650 661559 - 660498 - | phage portal protein TERM 593 661634 - 661615 - H 70 -6.6 -3.9951 | AAAGATTTAAAAATA TCTATATA TAGC TATATAGA GTGACTAAATTTATA TERM 594 661973 - 661957 - g 76 -2.9 -5.56264 | GTTAAATATAAAAAA TGTAGAC AGA GACCACA ACTTTAAACCAGAGG TERM 595 662033 - 662022 - g 75 -7.2 -4.2349 | opp_overlap 662022 662020 GCTGGATAGTTAAAA GCGG TGAT CCGC TATTTCCAAACGAAA CFF8240_0651 661691 - 662428 + | hypothetical protein CFF8240_0652 662428 - 663363 + | hypothetical protein CFF8240_0653 663353 - 663652 + | hypothetical protein CFF8240_0654 663872 - 664003 + | hypothetical protein CFF8240_0655 663996 - 664694 + | hypothetical protein CFF8240_0656 664684 - 665148 + | hypothetical protein CFF8240_0658 665178 - 665393 + | hypothetical protein TERM 596 665388 - 665398 + T 82 -5.4 -5.39755 | TTAAATAGGGTTGAA GACT AAG AGTC TTTTTTGTACTTATG CFF8240_0657 665563 - 665390 - | hypothetical protein TERM 597 665673 - 665712 + H 73 -7.6 -3.8493 | gap 1, opp_overlap 665672 665670 665680 665684, overlap 665667 665684 ATAAAAATATAATAG TTTA-ATATTAATGTTACT TTC AGTAACATTAATAGCTAAA TATTGTTTTTAATAT TERM 598 665704 - 665680 - H 95 -11.7 -3.10474 | opp_overlap 665673 665667 665684, overlap 665672 665670 665684 TATAATAGTTTAATA TTAATGTTACT TTC AGTAACATTAA TAGCTAAATATTGTT TERM 599 665700 - 665684 - H 73 -8.1 -3.37513 | opp_overlap 665684 665673 665667, overlap 665680 665672 665670 ATAGTTTAATATTAA TGTTACT TTC AGTAACA TTAATAGCTAAATAT TERM 600 665684 - 665700 + H 71 -8.1 -3.19091 | opp_overlap 665680 665672 665670 665684, overlap 665673 665667 ATAGTTTAATATTAA TGTTACT TTC AGTAACA TTAATAGCTAAATAT TERM 601 666286 - 666300 + G 72 -5.8 -4.35524 | GTGATATAGCAGCAC TTAAAG ACG CTTTAA TTTTAAATTTAAAAA TERM 602 666402 - 666388 - g 73 -3.6 -5.07275 | TTATAGAGATAAAAA CAAATA GAG CATTTG CATTTAAATATAAAA cas 665850 - 666566 + | CRISPR-associated protein Cas6 TERM 603 667390 - 667378 - g 71 -3.4 -5.07652 | opp_overlap 667378 GTTCGCAAAATAAAA TCAC CGTTC GTGA CTTTGACTCTATTTT CFF8240_0660 666834 - 668246 + | hypothetical protein CFF8240_0661 668230 - 669183 + | hypothetical protein cas5h 669180 - 669941 + | CRISPR-associated protein Cas5, hmari subtype TERM 604 670591 - 670581 - g 91 -2.6 -6.07374 | opp_overlap 670581 670583 670585, overlap 670583 670585 ATAAAAAAGAAAAAA TTTA CTC TAAA TTTAGAGAATTTTAT cas 670094 - 672310 + | CRISPR-associated helicase Cas3 domain-containing protein CFF8240_0664 672307 - 672792 + | CRISPR-associated protein Cas4 cas 672834 - 673802 + | CRISPR-associated protein Cas1 cas 673799 - 674098 + | CRISPR-associated protein Cas2 TERM 605 674491 - 674503 + F 80 -6.3 -4.95484 | TAATATTATTTTTGT TGCAA TGT TTGCA TTTTGTTTGCTAATG CFF8240_0667 674648 - 674779 + | hypothetical protein TERM 606 674810 - 674800 - f 74 -8.2 -3.53091 | opp_overlap 674807 ATGTTTGTGTTGAAA CGGC GCA GCCG TAGAATTAGGGCTTA CFF8240_0668 675359 - 675487 + | hypothetical protein TERM 607 676377 - 676366 - g 79 -4.4 -5.38549 | CTGAAATAACAAAAA TTCC GTAT GGAA CTATAGCAAGCTGGA TERM 608 676597 - 676580 - g 79 -4.2 -5.36441 | GGGGCATAGAAAAAA GCTATA TGATTT TATAGC GCAATTTAGCGCAAA CFF8240_0669 676320 - 676790 + | hypothetical protein CFF8240_0670 677416 - 676925 - | DNA adenine methylase TERM 609 678238 - 678228 - g 71 -6.8 -4.2109 | CAATAGATATATAAA CGCT TTT AGCG ATAATGGGTATTTCA CFF8240_0671 677608 - 678390 + | hypothetical protein CFF8240_0672 678366 - 678662 + | hypothetical protein CFF8240_0673 678703 - 678909 + | hypothetical protein TERM 610 679039 - 679063 + T 71 -7.2 -3.80452 | opp_overlap 679036 679035 679045, overlap 679036 TCCAAACTAAAGGCG TCAAACGCTC ATTTA GAGCCTTTGA TTATTGCTATAATTT CFF8240_0674 679318 - 679070 - | hypothetical protein TERM 611 679295 - 679282 - G 73 -9.5 -2.83403 | overlap 679281 CGCCGCCTACTAAAG CCCCG CTTA CGGGG TGCCCCGACCGGGTC TERM 612 679467 - 679477 + r 82 -5.4 -5.39755 | TTAAATAGGGTTGAA GACT AAG AGTC TTTTTTGTACTTATG CFF8240_0675 679642 - 679469 - | hypothetical protein TERM 613 681436 - 681458 + G 76 -2.7 -5.49234 | opp_overlap 681436 681440, overlap 681429 681440 GATGAGTTTAAAATA GAAGGAGTT AGAAC AACTCTTCC TTTTTTATTAGCTAT CFF8240_0676 680200 - 681645 + | acetyl-CoA carboxylase CFF8240_0677 681652 - 681888 + | hypothetical protein TERM 614 682009 - 682037 + G 73 -8.2 -3.63895 | opp_overlap 682010, overlap 682010 AAAGCATGGATATAG ACGGTTTGGAAG CTATT TTTCCAAACCGA TTTGCGATGGTTGCG TERM 615 682010 - 682036 + G 83 -11.7 -2.78015 | opp_overlap 682010, overlap 682009 AAGCATGGATATAGA CGGTTTGGAAG CTATT TTTCCAAACCG ATTTGCGATGGTTGC TERM 616 682036 - 682010 - g 83 -11 -3.01684 | opp_overlap 682010 682009 AAGCATGGATATAGA CGGTTTGGAA GCTATTT TTCCAAACCG ATTTGCGATGGTTGC CFF8240_0678 681875 - 682591 + | arginyl-tRNA-protein transferase TERM 617 683423 - 683408 - g 71 -3.2 -5.1361 | overlap 683399 ACAAATTCCAAAAAA TCGGAC TTGC GTACGA AGCGCTAAAACCATA CFF8240_0679 682648 - 683472 + | adenylosuccinate lyase TERM 618 683533 - 683490 - f 70 -7.7 -3.36175 | opp_overlap 683490 683483 AATTTTGATGTATAA TTTACACTAAATTTCAAAG GATTAT CTATGAAACTTGGTGTAAA TATAGATCATGTAGC pdxJ 683517 - 684290 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 619 684368 - 684356 - g 71 -6.3 -4.15543 | GAAATAGCTCTAAAA TCTCA CGA TGAGA TAAAAAATATCTGCT pdxA 684287 - 685210 + | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 620 686763 - 686793 + G 73 -4.2 -4.93365 | gap 1 ATGGATCATAACACT TCCTATA-TCGAT GATAGG ATCGGCTATAGGA TTTTTGGTTATCAAA CFF8240_0682 685276 - 686826 + | phosphate transporter family protein TERM 621 687267 - 687255 - g 76 -2.7 -5.43866 | GAAGGTTTAAAAAAA CATCT TAT AGATA TAGCAAATAGCTCTA TERM 622 687801 - 687785 - g 72 -5.1 -4.7657 | opp_overlap 687776, overlap 687776 TAAAAACGGTAAAAA CAACGTT GTT AGCGTTG CTATAAATAACAGTG TERM 623 688941 - 688931 - g 84 -6.8 -5.04987 | opp_overlap 688930 AACAGCTTTAAAAAA CGGT GTT ACCG ATGTTCAAGCTCAAG CFF8240_0683 686898 - 689741 + | flagellar hook-associated protein TERM 624 689857 - 689885 + G 76 -9.6 -2.95081 | opp_overlap 689862, overlap 689855 689862 GTTGCGACTATCGTT CCAAATGCCTCC TTTGT GGGGACATTTGG TAATATTTTAGGTAG TERM 625 691299 - 691314 + G 71 -6.8 -4.15864 | AATAAAAAAAGATGG CGGCGA AACA TTGCCG TTTATCGTTGTTATC CFF8240_0684 689803 - 691950 + | DNA translocase FtsK CFF8240_0685 692017 - 692280 + | hypothetical protein CFF8240_0686 692273 - 692698 + | hypothetical protein CFF8240_0687 692699 - 693583 + | polyprenyl synthetase hemA 693583 - 694851 + | glutamyl-tRNA reductase TERM 626 695622 - 695654 + G 71 -3.3 -5.05782 | overlap 695624 CAGAAATTTTTTACT CCTGGTTGCTCTAGC ATA GCTAAAGTTACCGAG TTTTTTAAGGTAGAT TERM 627 695721 - 695702 - g 72 -5 -4.7254 | overlap 695703 AGCCGTGATGAAAAA GGCTATCT ATGA AGATAGCG AAAAAATAGTAGTAT TERM 628 695720 - 695703 - g 75 -8.5 -3.43042 | overlap 695702 GCCGTGATGAAAAAG GCTATCT ATGA AGATAGC GAAAAAATAGTAGTA proS 694848 - 696551 + | prolyl-tRNA synthetase TERM 629 696828 - 696847 + G 74 -6.6 -4.29929 | TTTTTATCATAGTTA TATCTTTA ATAC TAAAGATA TTTGTTAGGTTTAGT CFF8240_0690 696548 - 696940 + | hypothetical protein hemC 696953 - 697864 + | porphobilinogen deaminase TERM 630 697864 - 697887 + T 83 -10.4 -2.94199 | opp_overlap 697869 697873, overlap 697859 697869 AGAAGAGATGGTTTA GATAAGCTAG ATAA CTGGCTTATC TCTACTTAATCCATC CFF8240_0692 698670 - 697870 - | ribonuclease BN CFF8240_0693 700059 - 698680 - | glycolate oxidase, subunit GlcD TERM 631 699153 - 699169 + g 74 -5.2 -4.79826 | overlap 699161 TAAACTCAGTTGCGC CGTTTT GCTCA AAAACG TTTTTGATGATCTCT TERM 632 699346 - 699310 - G 70 -4.3 -4.70266 | opp_overlap 699312 699315, overlap 699311 699312 AAGATTATCCAAAAA CTCCATAGCTACAGGAG TTA CTCCTGCTGCCATAGTT TTATAAACAGCATTC TERM 633 699344 - 699312 - G 83 -11.3 -2.63922 | opp_overlap 699312 699315, overlap 699311 699310 GATTATCCAAAAACT CCATAGCTACAGGAG TTA CTCCTGCTGCCATAG TTTTATAAACAGCAT TERM 634 699672 - 699702 + g 71 -3.5 -5.05228 | overlap 699677 CACTAGCAGGATCTG GCGGATAGAA-AAGT CCT ACTTCTTCTA-CTGC TTTTTGTAGTTTCAT CFF8240_0694 700777 - 700061 - | hypothetical protein CFF8240_0695 700946 - 701077 + | hypothetical protein TERM 635 701169 - 701159 - f 74 -4 -5.21709 | TTGCAGATTAAAAAA GTTT TTG AAAC TGCATATAAATATAA CFF8240_0696 701525 - 702691 + | M24/M37 family peptidase TERM 636 703035 - 703018 - g 70 -4.2 -4.79826 | opp_overlap 703018 703022 703024, overlap 703024 703026 703027 ATAGATGAGGAAAAA GCTAAA GAGCTT TTTAGC TCTCTTGAATTAGAT mgtE 702700 - 704061 + | magnesium transporter CFF8240_0698 704046 - 704630 + | NUDIX domain-containing protein TERM 637 704635 - 704658 + T 82 -8.2 -4.55673 | opp_overlap 704635 ATATGTTCTAGCTAA GGGCTAAAAA AGAT TTTTCAGCCC TTTTATAATATCTTT TERM 638 704658 - 704635 - T 84 -10.4 -3.05935 | opp_overlap 704635 ATATGTTCTAGCTAA GGGCTAAAAA AGAT TTTTCAGCCC TTTTATAATATCTTT CFF8240_0699 707187 - 704638 - | hypothetical protein TERM 639 705337 - 705325 - G 72 -4.9 -4.7497 | TTTACCGATTAAAAA TTCAA ATT TTGAA ATATCGTTTATATTA TERM 640 707519 - 707509 - g 84 -5.4 -5.45802 | GCTTCAAAAGAAAAA CCTT CAA AAGG AAAAGTAGTAGCAGC groES 707404 - 707667 + | co-chaperonin GroES groEL 707685 - 709322 + | chaperonin GroEL TERM 641 709331 - 709353 + F 83 -7.7 -4.76171 | opp_overlap 709331 GATGTAAGCCCTAAA GCAGACTCC TTTTT GGGGTTTGC TTTTATACTTTTTTA hemH 709480 - 710424 + | ferrochelatase CFF8240_0702 712236 - 710416 - | penicillin-binding protein TERM 642 711181 - 711170 - G 71 -3 -5.1101 | opp_overlap 711170 TCAGCACTTAAAAAA TCAT TTTT ATGA CTATCTGTTATTGTT fliE 712523 - 712236 - | flagellar hook-basal body protein FliE flgC 713021 - 712527 - | flagellar basal body rod protein FlgC flgB 713471 - 713031 - | flagellar basal body rod protein FlgB aat 714179 - 713517 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 643 713897 - 713917 + g 79 -9.1 -3.52234 | TCGGCTCCGTTTTCT CTCTTTGTG TTT TACAAAGAG TTATGAGTTTCTTAA CFF8240_0708 715030 - 714176 - | hypothetical protein CFF8240_0709 717225 - 715027 - | ATP-dependent Clp protease ATP-binding subunit ClpA TERM 644 717177 - 717192 + g 75 -4.7 -4.89562 | overlap 717176 GAGATTTTGAAATGG CAAGC TCATTT GCTTG TTTTATTGATTTTGC clpS 717524 - 717225 - | ATP-dependent Clp protease adaptor protein ClpS CFF8240_0711 718110 - 717514 - | thioredoxin domain-containing protein smpB 718583 - 718128 - | SsrA-binding protein TERM 645 718474 - 718484 + g 74 -6.8 -4.43477 | AGATTCGCTCTGCCT GCTC TAA GAGC TTTTACTTCACTACC CFF8240_0713 719536 - 718796 - | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase csrA 719760 - 719533 - | carbon storage regulator truB 720580 - 719744 - | tRNA pseudouridine synthase B CFF8240_0716 722634 - 720577 - | ATP-dependent DNA helicase PcrA TERM 646 721142 - 721159 + g 73 -4.1 -4.93898 | overlap 721144 ATATTTGCTACTCTA TCTACCC CGTC GGGTAAA TTTTTATAATACTCT TERM 647 723007 - 722987 - g 74 -5.4 -4.8048 | GCTTCAGATCAAAAA GCTAGAAG AGATA CTTCAAGC AACTTTGATCATGAG CFF8240_0718 722868 - 723740 + | transcriptional regulator, putative CFF8240_0717 724173 - 723730 - | hypothetical protein CFF8240_0719 725892 - 724183 - | oligoendopeptidase F, putative TERM 648 724943 - 724965 + g 75 -10 -2.52795 | opp_overlap 724941 724940 TTTTCATCAAAAGCT CTTTTTGCAA GTT TTGCGAAAAG TGGATTAAAAGAGTT TERM 649 725086 - 725067 - G 71 -6.4 -4.11281 | opp_overlap 725067 725065 TATCATAATCATAAA GCTTCTCG TATC CTAGAAGC TCTCTTTTTTTATGA TERM 650 725944 - 725933 - R 90 -3 -6.17268 | TTATAACAAAAAAAA TCTA ATAA TAGA AATTTGTGCAACCAG CFF8240_0720 727211 - 725982 - | serine/threonine transporter SstT TERM 651 726423 - 726411 - G 71 -3.3 -5.14563 | opp_overlap 726411, overlap 726412 GCTTCTAGTAAAAAA TGCAG TAA CTGCG CTCTCTTTTATGCAA metK 727371 - 728567 + | S-adenosylmethionine synthetase TERM 652 728777 - 728749 - f 90 -8.5 -4.71061 | opp_overlap 728749 728752 728756 728762, overlap 728756 ATTTAGATTTAAAAA TAATAAATTTTAT TTG ATAAAATTTATCA ATTACTTAGCTAACT CFF8240_0722 728839 - 729711 + | AfeA CFF8240_0723 729698 - 730540 + | AfeB CFF8240_0724 730515 - 731339 + | AfeC TERM 653 731766 - 731784 + G 84 -6.1 -5.38348 | GGTTTTGATTGTGAT TCTTCTA TTTTT TAGAAGA TTTTTTACTGTTTTT CFF8240_0726 731320 - 732135 + | AfeD lnt 733357 - 732122 - | apolipoprotein N-acyltransferase TERM 654 733128 - 733114 - G 72 -2.8 -5.22312 | overlap 733123 ATCCATAGTAAAAAA GGCTAA AAC TTATCC AATAAAACCAAAACA yajC 733360 - 733641 + | preprotein translocase subunit YajC TERM 655 733693 - 733714 + G 89 -8.7 -4.56597 | AGCTCTTATATTTGG GCTTGGCTT TTCG ATGCCAAGC TTTTTACAGAGCGAA TERM 656 734715 - 734729 + G 70 -4.3 -4.68479 | AAAGTATGGTAGCGC TAGCT GGCGG AGCTA TTTTGGTTGTTTTAT TERM 657 734996 - 734986 - g 83 -6.8 -4.89393 | GAAAGGTTATAAAAA CGCT ATG AGCG CGATAATCGATTCAA secD 733634 - 735223 + | preprotein translocase subunit SecD secF 735223 - 736194 + | preprotein translocase subunit SecF CFF8240_0730 736204 - 736542 + | hypothetical protein TERM 658 737564 - 737574 + G 73 -8.2 -3.64912 | opp_overlap 737561 ACTTGCTGAATATGG CGGC GGA GCCG TTATGTCTGTGCCTG leuS 736551 - 738986 + | leucyl-tRNA synthetase CFF8240_0732 738988 - 739527 + | hypothetical protein CFF8240_0733 739508 - 741052 + | diguanylate cyclase TERM 659 741961 - 741948 - g 76 -3.9 -5.25893 | opp_overlap 741951, overlap 741938 AGAGATAGCAAAAAA CTTTA CTAA TAAAG TATACCTTATATATA folC 741052 - 742221 + | folylpolyglutamate synthase CFF8240_0735 742211 - 743101 + | M24/M37 family peptidase CFF8240_0736 743050 - 743463 + | hypothetical protein TERM 660 743690 - 743680 - g 73 -4 -5.10497 | opp_overlap 743680 AAGTGATTCAAAAAA TAAG CTG CTTA TATCTCCTATTCGTA TERM 661 745185 - 745169 - g 81 -8 -4.26079 | overlap 745160 TTAAATGATGCAAAA CCGATG GTTGT CATCGG CACTCATTCTCTTTT mfd 743444 - 746401 + | transcription-repair coupling factor CFF8240_0738 746398 - 747003 + | hypothetical protein CFF8240_0739 747025 - 747771 + | hypothetical protein TERM 662 747942 - 747931 - g 79 -4.4 -5.22039 | TGTAAATTTAAAAAA TGCA GACG TGCA AAGCCTTGAAGATGT CFF8240_0740 747761 - 748426 + | endonuclease III CFF8240_0741 748482 - 748883 + | protein YgiW CFF8240_0742 748953 - 749432 + | CoA-binding domain-containing protein ilvA 749416 - 750627 + | threonine dehydratase TERM 663 750665 - 750637 - f 88 -7.6 -4.87626 | opp_overlap 750630, overlap 750630 TTCTAATACTAAAAA TTAGCTTGGATT ATCAA AATCTAAGCTAA AATGTAGATATTTAA TERM 664 752264 - 752243 - g 76 -4.5 -5.13473 | overlap 752232 752244 ATTACATGCAAAAAA TTTACTTGA TATT TCAAGTAAC GAAAATTTGCGTGTA TERM 665 752263 - 752244 - g 73 -8 -3.66999 | overlap 752232 752243 TTACATGCAAAAAAT TTACTTGA TATT TCAAGTAA CGAAAATTTGCGTGT TERM 666 753081 - 753071 - g 79 -4 -5.4505 | TGCGGCAAGAAAAAA TAAG ACG CTTA GACAGTATTTTTCTT TERM 667 753916 - 753900 - g 79 -3.7 -5.44721 | opp_overlap 753902 ATTAGCGCAAAAAAA GATGCTA ATA TAGTATC TAGTAATATAAGCTC TERM 668 755095 - 755072 - g 71 -5.2 -4.55798 | overlap 755074 755077 TAGTTCAAATGAAAA TATCACGCAG ATTA CTGCGGGAGA AAATTTAAATATTTC TERM 669 755093 - 755074 - g 73 -7.8 -3.88396 | overlap 755072 755077 GTTCAAATGAAAATA TCACGCAG ATTA CTGCGGGA GAAAATTTAAATATT TERM 670 755931 - 755921 - g 72 -2.6 -5.34381 | AAATGGAAATAAAAA TAAT ATT ATTA GCACTGATACTCAAA CFF8240_0744 750879 - 756116 + | hemagglutination activity domain-containing protein TERM 671 756287 - 756267 - g 72 -2.5 -5.31158 | GAAAAAAATCAAAAA CAAGAGCGA ATT TTGCCCTTA GATAGAGATGAAATC CFF8240_0745 756117 - 757760 + | haemolysin secretion/activation protein ShlB/FhaC/HecB CFF8240_0746 757911 - 757786 - | hypothetical protein truA 758684 - 757908 - | tRNA pseudouridine synthase A CFF8240_0748 759706 - 758681 - | YjgP/YjgQ permease TERM 672 758970 - 758986 + g 75 -8.1 -3.79335 | overlap 758967 AATGCTTTTAGCCAG TACTCTT TTA AAGAGTA TGTTTCGTTTTTATT TERM 673 759266 - 759290 + g 70 -2.1 -5.29742 | overlap 759258 TTTTTGTCCAAATTC GCTTGGTTTTA TAT TTAAACTTAGC TTTGTTTTTTTGTAT pilD 760506 - 759706 - | type IV pilus prepilin peptidase PilD uppS 761183 - 760506 - | undecaprenyl diphosphate synthase CFF8240_0751 761863 - 761186 - | hypothetical protein coaBC 763023 - 761860 - | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 674 761921 - 761933 + g 82 -4.1 -5.55664 | TTATCCGTAAATTCA GTTGT TTT ACAGC TTTTTTTAGTGATAA TERM 675 762312 - 762324 + g 71 -6.3 -4.21936 | overlap 762316 TAATAAATTTGTATG GAGTT TCA AACTC TTTTGAGCTTATAAA TERM 676 762455 - 762465 + g 73 -4 -5.04385 | GTAGTAGGTCCGCTT GTTA TTA TAAC TTTTTTACCGATATA CFF8240_0753 764323 - 763013 - | bifunctional protein GlmU TERM 677 764904 - 764928 + G 71 -7.9 -3.60074 | opp_overlap 764904 764902 AATCGGCTATCAAGA TGCTTTTGCTC TTG GAGCAAAGCCA TTTAAAGAGTTTATG TERM 678 765037 - 765047 + G 76 -6.8 -4.46212 | opp_overlap 765037 ATACCTTTTACTATA GCTG CTC CAGC TTTTATCATCAGCGA fliP 764530 - 765264 + | flagellar biosynthesis protein FliP CFF8240_0754 766111 - 765257 - | hypothetical protein TERM 679 765391 - 765375 - G 72 -5.1 -4.6526 | overlap 765366 765378 ACAAATCCCCAAAAA GGAGCTA AAA TAGCTTC AAGTATTGCTATAAG CFF8240_0756 767040 - 766135 - | putative integral membrane protein TERM 680 767063 - 767078 + r 70 -4.8 -4.66002 | overlap 767068 TTTATCCTTAAAATT TTCTAT AATT ATAGAA TTATTTTTGTTAATC nadA 768252 - 767239 - | quinolinate synthetase TERM 681 767598 - 767611 + g 79 -3.9 -5.43487 | opp_overlap 767598 GATGGGTTATAATTA GTATA TCTT TATAC TTTTTTCTATAATTT TERM 682 768288 - 768298 + H 74 -2.6 -5.58209 | TTATTATTTTAGTTA TTAT AAG ATAA TTTTTTTAAATTTGG TERM 683 768586 - 768563 - H 73 -5.5 -4.78572 | TGCCAATTAATAAAA TTTATATCT TTTTTC AGATATAAA TACGCGTATCGAATA TERM 684 768698 - 768710 + H 74 -4.9 -5.01732 | TTTGTGTCACTTGTC TTGTT TTT AACAA TTTTTTCACAAAATT TERM 685 768777 - 768788 + G 72 -5.8 -4.31412 | overlap 768776 TGAAAAAATGGATAG CAGC TGCA GCTG TTTTGGTGGCTATTT TERM 686 769012 - 768998 - g 79 -4.2 -5.24449 | overlap 768999 GATAAAGTTAAAAAA GGCGAT AAA ATCGCT CAAATAGACTCTATA TERM 687 769011 - 768999 - g 73 -7.7 -3.73043 | overlap 768998 ATAAAGTTAAAAAAG GCGAT AAA ATCGC TCAAATAGACTCTAT TERM 688 769727 - 769703 - g 75 -5.1 -4.9645 | opp_overlap 769706, overlap 769698 769707 ACTATAATAATAAAA GAGATAAAAGA TAC TCTTTTACTTC CTACGATGGCTATAA CFF8240_0758 768761 - 769945 + | macrolide-specific efflux protein MacA CFF8240_0759 769942 - 771867 + | macrolide-specific ABC-type efflux carrier CFF8240_0760 771870 - 773168 + | outer membrane efflux protein TERM 689 774257 - 774268 + G 76 -4.4 -5.12707 | opp_overlap 774247, overlap 774247 774244 AGGAATTTTCGATTC GCAA ATGC TTGC TTTTTTAGAATTTGC CFF8240_0761 773169 - 774428 + | ComEC/Rec2 family protein CFF8240_0762 775667 - 774435 - | sensor histidine kinase TERM 690 775182 - 775192 + g 72 -2.6 -5.34365 | overlap 775170 ACGCTTTAATTTTCT TAAA GGT TTTA TTTTTCTTATTATAA CFF8240_0763 776338 - 775664 - | DNA-binding response regulator TERM 691 776401 - 776417 + r 80 -6.5 -4.88288 | opp_overlap 776401 776399 ATATTTTTAAATACA GCCGG CGTTTGA CCGGC TTTTATATTATTTTA CFF8240_0764 777840 - 776425 - | peptidase S1C, Do TERM 692 777620 - 777610 - G 71 -3.2 -5.03747 | AAATTCTTTAAAAAA CGGA TCG TCCA TTAGACTATTTAGAT CFF8240_0765 778050 - 778922 + | co-chaperone protein DnaJ TERM 693 779045 - 779022 - g 76 -9.7 -2.82834 | opp_overlap 779027, overlap 779024 779027 TACGTCAGTATGAGA GAGAAGGTT TAGTAG AACCTTCTC GTACGGGCGGAAAAA CFF8240_0766 778934 - 779305 + | putative heat shock protein HspR CFF8240_0767 779311 - 780930 + | sodium/hydrogen exchanger family protein CFF8240_0768 780943 - 782379 + | potassium/proton antiporter TERM 694 782722 - 782709 - g 79 -5.3 -5.02287 | opp_overlap 782709 GATAAAAATATAAAA GAGAA ATTT TTCTC TCATTTAGCATCTCA CFF8240_0769 782439 - 783011 + | hypothetical protein TERM 695 783541 - 783556 + G 70 -4.6 -4.74706 | ATGATGGATTTTTTG GACCCG GAGC CGGATC TTTTTGGATGTTCGC CFF8240_0770 783084 - 783857 + | inner membrane protein YfcA atpB 783911 - 784591 + | F0F1 ATP synthase subunit A CFF8240_0772 784596 - 784814 + | hypothetical protein TERM 696 784854 - 784821 - gf 73 -8.5 -3.01765 | opp_overlap 784827, overlap 784849 AGATCCTAAATTATA TTCAAATTTAAAAGA TAGT TTTTTTAAATTTGAA AGACTTCAAACAGCT TERM 697 785107 - 785135 + GF 75 -6.9 -4.09511 | opp_overlap 785106 785107 AAAGAGATAGAAGAC GCTATAAAATTAG GCG CTGATTTTATAAC TTTTAGCCCCATATT CFF8240_0773 784786 - 785322 + | thiamine monophosphate synthase TERM 698 785802 - 785786 - g 79 -5.2 -5.20222 | ATGAAACAAACAAAA GTTTAG TAGAC CTAAAC CGTGCAGGAACTCCG TERM 699 786637 - 786651 + G 73 -8.6 -3.315 | overlap 786636 GATTCGGCGATTTTG GCTATC ATT GATAGC GTTTTATCTGCAAAT gatB 785380 - 786798 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 700 786854 - 786877 + G 77 -9.8 -2.96991 | GTGGGGACAGGCACT TTTTTTTGCT CTTA AGCAAAAAAA TAATTGTGTTATAAG gpsA 786810 - 787700 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase CFF8240_0777 787697 - 788761 + | glycosy hydrolase family protein TERM 701 788745 - 788799 + T 80 -6 -5.16572 | overlap 788750 788753 CAAGGATACTTAGAT CAAAAGAAGGTTTATGAGCTTAATTT ATC AAATTCAGCTTTTAAATCGTCTTTTA TTTTTTGGCTTACAT TERM 702 788750 - 788794 + T 86 -5.9 -5.43553 | overlap 788745 788753 ATACTTAGATCAAAA GAAGGTTTATGAGCTTAATTT ATC AAATTCAGCTTTTAAATCGTC TTTTATTTTTTGGCT CFF8240_0776 789190 - 788756 - | hypothetical protein rarD 790055 - 789183 - | RarD protein TERM 703 789271 - 789250 - G 71 -3.1 -5.16132 | gap 1, overlap 789251 CAGATCAAAATAAAA CTGATAAGCT TGT AGCT-ATCAA GAGTCTCATTATACA CFF8240_0779 790813 - 790067 - | amino acid ABC transporter ATP-binding protein TERM 704 790108 - 790094 - G 76 -6.4 -4.59109 | opp_overlap 790077 790094 TAGATTTCCTAAAAA CCTAAG TAT CCTAGG ATTTTTTTGATTCTC CFF8240_0780 791454 - 790822 - | amino-acid ABC transporter permease protein YckJ TERM 705 791421 - 791447 + g 79 -9.4 -3.4252 | opp_overlap 791415 791412 791423, overlap 791445 AGGATATTAGGCTAA GAGGAATGGTGT ATT GCACCGCTCCTC TTATCATAGGTAAGA CFF8240_0781 792235 - 791477 - | amino-acid ABC transporter extracellular-binding protein yckK TERM 706 792354 - 792368 + r 70 -5.8 -4.29905 | opp_overlap 792354, overlap 792351 AATAAAAGGATAAAA TATAGT AAA ACTATA TTCTTTTAATATGCT TERM 707 792368 - 792354 - R 75 -5.8 -4.71401 | opp_overlap 792354 792351 AATAAAAGGATAAAA TATAGT AAA ACTATA TTCTTTTAATATGCT pgsA 792909 - 792364 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 708 792678 - 792653 - G 88 -7.7 -5.06103 | opp_overlap 792658, overlap 792643 ATAAGGCCTAAAAAA GCAGCTAAAAT AAGC ATTTTATCTGC TAAAGGATCTAGTAT CFF8240_0783 793694 - 792906 - | 7-alpha-hydroxysteroid dehydrogenase dapA 794587 - 793694 - | dihydrodipicolinate synthase CFF8240_0785 795831 - 794584 - | M16 family peptidase TERM 709 794717 - 794700 - G 75 -7 -4.13654 | opp_overlap 794700 TTTGCAAATCATAAA GAGGAG TTATAT CTCCTC TTGCTATATAACTTC TERM 710 794977 - 794988 + g 91 -4.4 -5.93809 | ATTTACTAAATTTAG CTCA TCTA TGAG TTTTTTTTGTAAAAG pyrD 796890 - 795832 - | dihydroorotate dehydrogenase 2 TERM 711 796480 - 796500 + g 86 -2.5 -5.84432 | opp_overlap 796484, overlap 796484 TAACGGCACGGCAAA CGGATAGAG TTT TTCTACTCG TTTTTTTATCTTATC TERM 712 796798 - 796781 - G 71 -7.7 -3.55447 | opp_overlap 796781 796782 796784, overlap 796792 TTATCTACTAGATAA TCTGCCG CAAA CGGCAAA TTTGCAGCTGTTCTT TERM 713 796816 - 796827 + g 70 -7.2 -3.79687 | overlap 796814 TGCAGCTGTTCTTAA GCCG CATT CGGC TATTTTATGGGCAGT CFF8240_0787 798660 - 796942 - | lipid export ABC transport protein TERM 714 797743 - 797753 + g 77 -5.4 -4.84311 | overlap 797735 TTCACTAGCCGCTAC TGCA TCT TGCA TTTTATTATATAGAC cysS 800036 - 798657 - | cysteinyl-tRNA synthetase TERM 715 799615 - 799630 + g 72 -6.2 -4.36914 | opp_overlap 799615 799614 799617 TTACTAGTATCAAAG TAGATG CCGT CATCTA TTTTATACGCCCAGC mviN 801420 - 800020 - | integral membrane protein MviN CFF8240_0790 801658 - 801542 - | hypothetical protein TERM 716 802336 - 802363 + G 76 -7.7 -3.96531 | AATTTACTATTTTCC GCGACGTATCC AAGTGA GGTTATGTCGC TTTGTAACTCTATGC CFF8240_0791 801778 - 803652 + | putative ATP-dependent RNA helicase RhlE TERM 717 803677 - 803702 + F 81 -8.5 -4.21343 | opp_overlap 803677 AGCTATTTAACCAAA TTTAGCATTAT GAAA ATAGTGCTAAA TTTATCTGTATTGAA CFF8240_0792 803859 - 804011 + | plasmid-related lipoprotein TERM 718 804045 - 804055 + F 70 -6.8 -3.89822 | opp_overlap 804044 804045 GAAGATTGTAAAAAT GCAG GAG CTGC TTTATACGCTGAATA TERM 719 804212 - 804191 - f 95 -11.7 -3.73068 | opp_overlap 804195, overlap 804195 TTGGTAATTTAACAA CAAAGAGGA TTTA TCCTCTTTG CCTACTAAATTAATT TERM 720 804208 - 804195 - f 76 -6.7 -4.4846 | opp_overlap 804195, overlap 804191 TAATTTAACAACAAA GAGGA TTTA TCCTC TTTGCCTACTAAATT mobB 804726 - 805277 + | molybdopterin-guanine dinucleotide biosynthesis protein B fbp 805261 - 806121 + | fructose-1,6-bisphosphatase CFF8240_0795 806342 - 806443 + | hypothetical protein metG 806462 - 808360 + | methionyl-tRNA synthetase CFF8240_0797 808360 - 809340 + | hypothetical protein TERM 721 809901 - 809871 - g 70 -7 -3.83205 | AGCGTCTATACTAAA TATAGCTCCAGAAA CTT TATCTAGAACTATA AGCCAGTTTAAGCAA CFF8240_0798 809356 - 809997 + | transcription regulator CFF8240_0799 810126 - 810677 + | putative tetraheme cytochrome c CFF8240_0800 810689 - 812074 + | hydroxylamine oxidase TERM 722 812083 - 812117 + T 93 -11.6 -3.88498 | opp_overlap 812091, overlap 812091 AGAATAGTTCTTTGT TCTAAAAAGCCCTGCA TTA TGTGGGGCTTTTTAAA TTTACTCTATCAAAA TERM 723 812091 - 812109 + T 95 -8.8 -4.82855 | opp_overlap 812091, overlap 812083 TCTTTGTTCTAAAAA GCCCTGCA TTA TGTGGGGC TTTTTAAATTTACTC CFF8240_0801 813972 - 812926 - | hypothetical protein TERM 724 814166 - 814180 + G 76 -3.6 -5.2204 | ATATGATTTTGTCCA TAGTAG CAT TTACTA TTTTTGTTGGTTGTG CFF8240_0802 814144 - 814518 + | copper homeostasis protein CutF CFF8240_0804 814515 - 815708 + | putative integral membrane protein cheR 816497 - 815703 - | CheR methyltransferase SAM-binding domain-containing protein CFF8240_0805 817056 - 816490 - | chemotaxis response regulator protein-glutamate methylesterase TERM 725 816839 - 816860 + g 84 -3.7 -5.71712 | opp_overlap 816839 816841, overlap 816841 TTTTTCTCACAAATA TACACTTTG TTTT CAAGGTGCA TTTTTTTATCTAGCA TERM 726 817331 - 817314 - g 88 -7.1 -4.85129 | opp_overlap 817313 817314, overlap 817303 AGTAGATACGAAAAA TCCATAT CAAG ATATGGA ATTTATAGCTTCTAA CFF8240_0806 817267 - 819147 + | hypothetical protein ruvA 819150 - 819704 + | holliday junction DNA helicase RuvA ddl 819713 - 820750 + | D-alanyl-alanine synthetase A TERM 727 820809 - 820776 - f 89 -9.9 -3.75153 | opp_overlap 820776 820784, overlap 820780 TCTTTCTAAGCCAAA TTTATGTAGAATTTT ACAT AAAATTCTACATTAA GGATCTGTCATGGCT TERM 728 820805 - 820780 - f 84 -10.7 -2.68071 | opp_overlap 820776 820784, overlap 820776 TCTAAGCCAAATTTA TGTAGAATTTT ACAT AAAATTCTACA TTAAGGATCTGTCAT TERM 729 820951 - 820938 - g 84 -8.1 -4.46215 | opp_overlap 820936 820938 TATAGTTAAAAACAA CCGCT TTGA AGCGG TACTTTTAAATATGG CFF8240_0809 820819 - 821055 + | hypothetical protein CFF8240_0810 821045 - 821839 + | alpha/beta hydrolase fold TERM 730 822050 - 822060 + G 74 -6.8 -4.30995 | overlap 822046 CGGATCTATTTTATA TGGC GTG GCCA TTATTTTATGGCAAA TERM 731 822949 - 822937 - g 76 -6.3 -4.57341 | opp_overlap 822935 822937 AAGCTGGTGGAAAAA TCATC ATC GATGA TAGTTTTAATGGAAA CFF8240_0811 821832 - 823268 + | Mur ligase family protein TERM 732 823321 - 823296 - T 72 -3.3 -5.24449 | opp_overlap 823296 TATAAATTTAAAAAA GAGCTAAATTT ATTC AAAAATAGCTC TTTAACAATTGTTAT TERM 733 823324 - 823335 + T 77 -3 -5.66868 | TCAAAAATAGCTCTT TAAC AATT GTTA TTTTTTTGATTGATT ackA 824532 - 823333 - | acetate kinase TERM 734 823428 - 823452 + g 75 -4.9 -5.01732 | opp_overlap 823431 823433, overlap 823431 GAACTTTTGTTTCAG GAAGACCTACG CGG CGTGGCTCATC TTTTTTAGCGGCATT CFF8240_0813 825927 - 824533 - | phosphate acetyltransferase TERM 735 824901 - 824884 - G 76 -9.9 -2.79501 | opp_overlap 824883 TACATCTTCACCACA TCCACTG TCGC CAGTGGA GTAACTTAGCATTGC TERM 736 825318 - 825339 + g 73 -7.5 -3.84931 | TTATAATAACTGCTT TTTCTAAAT TTAG ATTTAGAAA TTTCGCTCTTTCTTC flgH 826003 - 826707 + | flagellar basal body L-ring protein CFF8240_0815 826892 - 827515 + | hypothetical protein TERM 737 827570 - 827605 + F 78 -5.7 -4.91573 | gap 1, opp_overlap 827570 827571 827578, overlap 827571 ATAATTATATATAAA T-TTGATAAGTGTGTG ATTTC TACACACTTATCGATA TTTTTCATATATTTT TERM 738 827571 - 827603 + F 95 -10.8 -4.04813 | opp_overlap 827570 827571 827578, overlap 827570 TAATTATATATAAAT TTGATAAGTGTGTG ATTTC TACACACTTATCGA TATTTTTCATATATT TERM 739 827872 - 827856 - g 70 -8 -3.26813 | overlap 827857 ACTAGACATGAGCAA GCAGCA GTTCA TGCTGC TGATGGATATGCTAG TERM 740 828071 - 828085 + G 76 -3.6 -5.26875 | GGGAATTTCTCGCCC TTGTGT AAA ACATAA TTTTTTAGTTAAAAC TERM 741 829119 - 829133 + G 86 -5.6 -5.67063 | TTTTTAGGAATGGTT CGTCAG TGG CAGACG TTTTTTTATGGTGAA ilvB 827700 - 829376 + | acetolactate synthase 3 catalytic subunit ilvH 829380 - 829841 + | acetolactate synthase 3 regulatory subunit lpxD 829841 - 830788 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase CFF8240_0820 830785 - 831012 + | hypothetical protein dedA 831617 - 831009 - | DedA family protein TERM 742 832165 - 832149 - g 73 -7.9 -3.74158 | AATGTTAGCAAAATA CGCCGTA AAA TGCGGCG GCGGAGAAAATCATA nadC 831727 - 832557 + | nicotinate-nucleotide pyrophosphorylase purU 832758 - 833588 + | formyltetrahydrofolate deformylase CFF8240_0823 833589 - 834077 + | tRNA/rRNA methyltransferase TERM 743 834782 - 834801 + G 72 -2.8 -5.36441 | opp_overlap 834769, overlap 834783 TACAAAAACTCTAGT TTTGGCGT ATTC AAGCCAAG TTTTTTATCTAGCGG TERM 744 835188 - 835176 - g 71 -3.3 -5.03405 | overlap 835177 AAGATGAGATAAAAA GCGCT AGG AGCGG CGATGTTGTTTCAAA TERM 745 835238 - 835212 - g 77 -9.7 -3.12668 | opp_overlap 835216, overlap 835223 TTTCAAATTTGAAGA TAGATGTAAAA GATGG TTTTACATCTA TCAACGGTGAGAAAT CFF8240_0824 834065 - 835360 + | endonuclease/exonuclease/phosphatase, putative TERM 746 835462 - 835448 - g 76 -2.8 -5.49729 | AATGATGGAAAAAAA TCGTCT CAG AGATGA ACAAATAGCAAAAAG CFF8240_0825 835353 - 835535 + | hypothetical protein glyS 835642 - 837657 + | glycyl-tRNA synthetase subunit beta TERM 747 838260 - 838238 - g 72 -2.8 -5.22943 | gap 1 AGGAAACGGAAAAAA CGCTC-TTA AAAGGA TAATGAGCG ATATAACTTTGAAAA CFF8240_0827 837654 - 838742 + | DNA modification methylase CFF8240_0828 839179 - 838778 - | hypothetical protein TERM 748 839019 - 839043 + g 77 -8.7 -3.69618 | overlap 839017 TGTCTATTTTGCTCA TCGAAGTTCAT ATA ATCAACTTCGA TATTTTGCGATTGAG CFF8240_0829 839325 - 839176 - | hypothetical protein CFF8240_0830 840850 - 839423 - | amino acid carrier protein CFF8240_0831 842994 - 840919 - | metal transporting atpase Mta72 TERM 749 841874 - 841857 - G 70 -4.2 -4.72272 | CTGTTTTATCAAAAA CAAATG TATCTG CATTTG CTAGAGCTTCTATTG TERM 750 842383 - 842394 + g 83 -5.8 -5.09426 | ATCTTTTGCATTTAT GAGC TTGA GCTC TTTTTTGCCATTACC TERM 751 842739 - 842749 + g 84 -5.4 -5.47914 | TATAAATTTCAGCTT TGCT TGG AGCA TTTTTTATACTTTTT CFF8240_0832 843268 - 842981 - | hypothetical protein CFF8240_0833 843567 - 843265 - | hypothetical protein CFF8240_0834 843893 - 843600 - | hypothetical protein CFF8240_0835 844521 - 843886 - | hypothetical protein TERM 752 844011 - 844028 + g 73 -4.1 -4.93288 | overlap 844013 TTATGTTTTCCATAT TTGCTTC TCCT GAAGCTA TTTTGTTTGCCTCTT TERM 753 844533 - 844545 + r 70 -2 -5.51402 | GCACTGCAACTCCTT TTGA TTTCT TCAA TTTTTTTAGATATGT CFF8240_0836 844834 - 844511 - | hypothetical protein TERM 754 844589 - 844609 + g 72 -4.7 -4.73614 | opp_overlap 844590, overlap 844590 ACCATTTAGCATATC ATTCCAGAG ATG TTCTGGAAA TTTATTTTGATCGTA TERM 755 844590 - 844608 + g 72 -8.2 -3.43084 | opp_overlap 844590, overlap 844589 CCATTTAGCATATCA TTCCAGAG ATG TTCTGGAA ATTTATTTTGATCGT CFF8240_0837 845017 - 845226 + | hypothetical protein TERM 756 845437 - 845427 - g 84 -4 -5.75599 | CAAACGACAAAAAAA TATC CTG GATA GATCATCCATTAAAA CFF8240_0838 845294 - 846103 + | M24/M37 family peptidase CFF8240_0839 846167 - 846589 + | hypothetical protein TERM 757 846664 - 846619 - g 73 -9.2 -2.80252 | gap 1, opp_overlap 846634 846657, overlap 846616 846614 846657 AGTCTTAGAAGATGA GCCGATGCTGC-AAGATATGA TAAGT TCATATCTTCAAAGCTTCGGC TATGAAGTAGAAGCT CFF8240_0840 846590 - 847258 + | transcriptional activator protein CopR CFF8240_0841 847248 - 848372 + | sensor histidine kinase TERM 758 849399 - 849389 - g 71 -6.8 -4.22338 | ACTATAATGCTAAAA GCTC ACA GAGC TATAGAGAGCATTAC argG 848522 - 849745 + | argininosuccinate synthase TERM 759 850548 - 850536 - g 89 -6.3 -5.67063 | overlap 850538 850540 GTGATGATAAAAAAA CATCT TAT AGATG AACATCTACAAAATA CFF8240_0843 849810 - 850874 + | phage integrase family site specific recombinase CFF8240_0844 851026 - 852210 + | cell cycle protein FtsW TERM 760 852352 - 852367 + G 77 -3.4 -5.55664 | TTGAGCATAGCGATA TATTTA AATT TAAATA TTTTTTTCCTAGTAG TERM 761 852514 - 852537 + G 75 -8.1 -3.81488 | TCGGCGGATATAGCT CCGCTCCAG CTTCTT TTGGGGCGG TTATATTTAGAAAAA TERM 762 853044 - 853071 + G 79 -8.6 -3.86015 | TTTTACAATGCTAAG TTTTTGCTAGAT AGTA ATCTAGCTAAAA TTTATGAGCAGAATG murG 852207 - 853214 + | N-acetylglucosaminyl transferase CFF8240_0846 853381 - 853695 + | DNA-binding protein HU TERM 763 853702 - 853721 + F 72 -6.4 -4.39828 | opp_overlap 853701, overlap 853703 AAGAAATAATTTAAG CCCCTTCT GCAA AGAAGGGC TTTTATCCACATATT TERM 764 853703 - 853720 + F 83 -9.9 -3.23174 | opp_overlap 853701, overlap 853702 AGAAATAATTTAAGC CCCTTCT GCAA AGAAGGG CTTTTATCCACATAT TERM 765 854017 - 854031 + G 70 -2.1 -5.36441 | TAGTGGTTTGGTTCA GCATT GAAAG AGTGC TTTTTTATCTAAAGG exbB 853938 - 854351 + | TonB-system energizer ExbB expD 854354 - 854740 + | TonB system transport protein ExbD CFF8240_0849 854733 - 855482 + | TonB, putative TERM 766 855511 - 855491 - f 77 -4.8 -5.29846 | gap 1, opp_overlap 855491, overlap 855495 AAGCTGAAACAAAAA TTC-AGCCA AAAT TGGCTAGAA TTATATACATGAGAA CFF8240_0850 855520 - 855765 + | S4 domain-containing protein CFF8240_0851 855749 - 856150 + | hypothetical protein TERM 767 856233 - 856276 + G 73 -3.8 -5.06585 | GTTAGCAGCGGCGAA GTGGTTGGTTTGCTTGGTCC AAAC GGAGCTGGTAAAACAACAAC TTTTTATATGATTTG CFF8240_0852 856143 - 856871 + | ABC-transporter ATP-binding protein rpoN 856871 - 858109 + | RNA polymerase factor sigma-54 TERM 768 858130 - 858150 + F 70 -5.6 -4.30034 | opp_overlap 858124 TTTATAATATTTTTG TAAAATCA AATGA TGATTTTA TTTTAATCAAATTTT aroB 858196 - 859236 + | 3-dehydroquinate synthase CFF8240_0855 859233 - 860813 + | mechanosensitive ion channel family protein TERM 769 861254 - 861242 - g 71 -7.7 -3.66178 | opp_overlap 861242 GGTTGTAATTTTAAA TGCAG CTA CTGCA TTATACCTTCTGTAA CFF8240_0856 860810 - 862051 + | hypothetical protein TERM 770 862090 - 862107 + G 70 -7.1 -3.80452 | opp_overlap 862093, overlap 862093 GGGTTATAGCGGCAG GAACTAT TTTA ATAGTTC TTCTTGGTGTAGTTT TERM 771 863245 - 863221 - g 79 -4.3 -5.27023 | overlap 863225 ACGGTAAAAAGAAAA TTTACTCTTTG AGT CAAAGTGAAAA AGAAATTCAAGCTCT CFF8240_0857 862029 - 863699 + | atpase ec atp-dependent Zn protease CFF8240_0858 863689 - 864219 + | molybdopterin biosynthesis mog protein TERM 772 864293 - 864273 - T 83 -8.4 -4.52505 | opp_overlap 864267 AATAAAAATTTAAAA GTGTAAGT TTTAT ACTTACAC TAATAATTACTTAAA CFF8240_0859 865092 - 864475 - | hypothetical protein rseP 866201 - 865089 - | RIP metalloprotease RseP TERM 773 865646 - 865658 + g 85 -6.3 -5.21709 | TGATATTTATCGGCT CAAGT TTA ACTTG TTTTTTGATGTCGCC TERM 774 865760 - 865780 + g 74 -9.1 -3.04902 | overlap 865759 865762 CAGAGCCTTGTTGGA TAGTTCCTA TGA TAGGAGCTA ATTTATCTACTCCGA rpe 866330 - 866971 + | ribulose-phosphate 3-epimerase TERM 775 867400 - 867416 + G 85 -9.5 -3.90762 | overlap 867398 867415 TAGTCTTGCGAATGT GCTTGAA AAA TTCAAGC TGTTTTTAGGAGATA CFF8240_0863 866984 - 867781 + | DNA polymerase III subunit epsilon priA 869606 - 867774 - | primosome assembly protein PriA TERM 776 868816 - 868798 - G 82 -4.6 -5.58209 | TTAAATTTAAAAAAA CTACTC ACGCTTG GAGTAG CGCTTCCTAAAACAA TERM 777 869581 - 869561 - G 72 -8.3 -3.44146 | TGCTTTCATAAGTAA GCGGTTTTA AAT TCAAACCGC TAAGAGCTATTTCGT CFF8240_0864 870024 - 869614 - | N-terminal methylation domain-containing protein CFF8240_0865 870812 - 870051 - | N-terminal methylation domain-containing protein TERM 778 870436 - 870426 - G 71 -6.8 -4.09628 | CATTTTAAATAATAA GCGA TAA TCGC TACCCTTCTTTTTTC CFF8240_0866 871441 - 870809 - | N-terminal methylation domain-containing protein CFF8240_0867 871577 - 871461 - | hypothetical protein CFF8240_0868 871969 - 871766 - | transformation system protein CFF8240_0869 872280 - 872056 - | hypothetical protein CFF8240_0870 872510 - 872277 - | hypothetical protein TERM 779 873883 - 873865 - g 74 -3.1 -5.21709 | overlap 873867 GTTTATAGCAAAAAA GGCAAAC TATCT GTTTGTC TCAGCCACTCCAAAC uvrB 872702 - 874678 + | excinuclease ABC subunit B CFF8240_0872 875040 - 876086 + | putative iron-regulated membrane protein TERM 780 876482 - 876498 + G 70 -4.3 -4.74103 | overlap 876483 876484 TATCTGCTTGATTCT ATGCCGA GTT TCGGCGG TTTTTCACTTGGAGC TERM 781 876484 - 876496 + G 72 -9.1 -2.65906 | overlap 876483 876482 TCTGCTTGATTCTAT GCCGA GTT TCGGC GGTTTTTCACTTGGA CFF8240_0873 876113 - 878251 + | outer membrane receptor for Fe TERM 782 878260 - 878297 + F 82 -9.5 -3.36128 | opp_overlap 878263 878279, overlap 878227 878263 TTTCTAATTGAAATT TAAGGTTTTTATATTTA AATT TTAATGTAAAAACCTTA TTAAATTTATACTTT TERM 783 878387 - 878405 + F 81 -3.2 -5.75478 | TAACAGATTTAATAT TAAGTGGA ATT TTTACTTA TTTTTTTGTATAATT TERM 784 879084 - 879100 + G 90 -8.1 -4.95806 | opp_overlap 879084, overlap 879096 TGTTGCGTTTATAAA TATAGTC TTA GACTATA TTTTTATAGTAATTT TERM 785 879100 - 879084 - g 75 -8.1 -3.85698 | opp_overlap 879084 879096 TGTTGCGTTTATAAA TATAGTC TTA GACTATA TTTTTATAGTAATTT TERM 786 879777 - 879819 + G 83 -6.4 -4.84673 | opp_overlap 879784 879789, overlap 879778 TATTTTGACAAATTT TTTAGAAGTAAACGGAGT ATGGCTA ACTCCGTTTGCGGCTAAG TTTTGTGTTGTTTGG CFF8240_0874 878575 - 879894 + | putative integral membrane protein TERM 787 879951 - 879969 + F 71 -4.6 -4.84274 | opp_overlap 879951 879954, overlap 879954 TTAAATTTAGAATAT TAAGTGAA ATT TTCACTCA TTTTTAGTATAATTA ppk 880007 - 882097 + | polyphosphate kinase TERM 788 882180 - 882195 + F 74 -6.2 -4.61868 | overlap 882167 ACTCCAAAACTCTAA GAAGTT TTTG AACTTC TTTTGTATCTAACTC TERM 789 882626 - 882653 + F 76 -7.2 -4.2928 | GCGATGTTTGTTTTT TTTGTAATTTAG CTCA CTCAATTACAAA TTTATAGTTTTTATG TERM 790 882960 - 882972 + G 82 -3.4 -5.59534 | AAACTCGCCTTACAC TGCT ACATA AGCA TTTTTTCTTATACTT CFF8240_0876 882794 - 883066 + | hypothetical protein TERM 791 883324 - 883300 - g 73 -7.2 -4.02049 | GAAGTATCAAAAAGA TGCGCATATA GATTT TATAAGCGCA AACGATTTTTCTTAT metE 883145 - 885400 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 792 885417 - 885440 + F 100 -12.6 -3.57144 | AATATGTATTGATAT TTTGCTCATC TTAT GATGAGCAAA TTTGAAAGTAAAAAA CFF8240_0878 885458 - 886351 + | hypothetical protein CFF8240_0881 889185 - 888706 - | phosphohistidine phosphatase SixA CFF8240_0882 889985 - 889182 - | hypothetical protein CFF8240_0883 890500 - 889982 - | rhomboid family protein TERM 793 890673 - 890663 - H 71 -4 -5.1523 | overlap 890671 TTTATAATATAAAAA TAAG AGA CTTA AACTAAATTTAAAGG TERM 794 891420 - 891377 - g 71 -3.1 -5.12474 | GAGAAGATATAAAAA GCATCCATCTATACGACTT TTTATT AAAACGCACAGAAGGAGGC TTAATATGAACGCAC CFF8240_0884 890695 - 891429 + | hypothetical protein CFF8240_0885 891426 - 892850 + | iron-sulfur cluster binding protein TERM 795 893339 - 893329 - g 74 -6.8 -4.38171 | opp_overlap 893329 GATAGCATAGTAAAA TCGC TTT GCGA TATGCTAAATAGGAT TERM 796 893378 - 893389 + G 73 -4.4 -4.96848 | AAGACGGAAAACTGC CTAC AAAC GTAG TTTTTATATCAGGAC CFF8240_0886 892843 - 893484 + | hypothetical protein TERM 797 893513 - 893547 + T 76 -8.8 -3.64184 | opp_overlap 893511 893509 893507 893513 893516 893518 893522 CATTTAAAATACAGA TGAGATTAAGCTAAAT TTA ATTTAGCTTAATCAAA TTTAAAATACTATTT TERM 798 893547 - 893513 - T 74 -8.8 -3.2785 | opp_overlap 893513, overlap 893511 893509 893507 893516 893518 893522 CATTTAAAATACAGA TGAGATTAAGCTAAAT TTA ATTTAGCTTAATCAAA TTTAAAATACTATTT TERM 799 893544 - 893516 - T 100 -14.9 -2.80859 | opp_overlap 893513, overlap 893513 893511 893509 893507 893518 893522 TTAAAATACAGATGA GATTAAGCTAAAT TTA ATTTAGCTTAATC AAATTTAAAATACTA TERM 800 893542 - 893518 - T 93 -11.7 -2.93929 | opp_overlap 893513, overlap 893516 893513 893511 893509 893507 893522 AAAATACAGATGAGA TTAAGCTAAAT TTA ATTTAGCTTAA TCAAATTTAAAATAC TERM 801 893538 - 893522 - T 71 -8.1 -3.31983 | opp_overlap 893513, overlap 893518 893516 893513 893511 893509 893507 TACAGATGAGATTAA GCTAAAT TTA ATTTAGC TTAATCAAATTTAAA CFF8240_0887 894202 - 893573 - | hypothetical protein TERM 802 894352 - 894340 - g 71 -3.4 -5.08011 | opp_overlap 894340 AAAAGGCGGAAAAAA GCTA TTTGG TAGC GTTTATATAAGCGGA TERM 803 895082 - 895094 + G 74 -6.3 -4.45168 | opp_overlap 895081 TTAAAACAAGTAGAG CCAAA TCA TTTGG TTTCTGTTTTAGGAA murA 894308 - 895567 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase CFF8240_0889 895579 - 896757 + | molybdopterin biosynthesis enzyme TERM 804 896845 - 896829 - g 72 -9.5 -2.62983 | overlap 896832 CTCAGGGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCGA flgA 896761 - 897537 + | flagellar basal body P-ring biosynthesis protein FlgA coaD 897541 - 898020 + | phosphopantetheine adenylyltransferase tdk 898014 - 898592 + | thymidylate kinase hisS 898589 - 899818 + | histidyl-tRNA synthetase speA 899815 - 901656 + | arginine decarboxylase cysE 901660 - 902355 + | serine O-acetyltransferase CFF8240_0897 902361 - 903530 + | aspartate aminotransferase TERM 805 903573 - 903552 - g 83 -10.2 -3.32536 | opp_overlap 903552, overlap 903540 AAATCAGCGTGATAA TCCCTTGC TTTAAT GCAAGGGA TTATATAAATGAGTG TERM 806 903552 - 903573 + G 86 -10.2 -3.524 | opp_overlap 903552 903540 AAATCAGCGTGATAA TCCCTTGC TTTAAT GCAAGGGA TTATATAAATGAGTG CFF8240_0898 903530 - 904531 + | sugar transferase CFF8240_0899 904646 - 906436 + | twin-arginine translocation pathway signal TERM 807 906482 - 906458 - T 74 -8.6 -3.28864 | opp_overlap 906447 906479, overlap 906457 TTATCACTATAAAAT TGTGTGTTGG ACAAG CCAGCACACA GCAAAACGAGTTGTG CFF8240_0900 906985 - 906500 - | flavodoxin TERM 808 907113 - 907137 + r 78 -10.2 -2.66787 | opp_overlap 907116, overlap 907116 ATATTTCAATCTCAA TAAGTGTTTC CATAT GAAACACTTA TAATATAGATATTAA TERM 809 907134 - 907116 - R 71 -7.5 -3.68222 | opp_overlap 907113 907116 TTTCAATCTCAATAA GTGTTTC CATAT GAAACAC TTATAATATAGATAT TERM 810 907116 - 907134 + r 70 -7.5 -3.47841 | opp_overlap 907116, overlap 907113 TTTCAATCTCAATAA GTGTTTC CATAT GAAACAC TTATAATATAGATAT CFF8240_0901 907260 - 907135 - | hypothetical protein CFF8240_0902 907435 - 908412 + | tricarboxylic transport CFF8240_0903 908409 - 908852 + | putative tricarboxylic transport membrane protein TERM 811 909743 - 909769 + T 83 -6.6 -4.86939 | opp_overlap 909741 GTAAATAAATGTAGA TCCAAAGCCC AGAAAAA GAGCTTTGGA TTTTTAAATTTATTA oorC 910355 - 909804 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorC oorB 911197 - 910352 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorB oorA 912320 - 911199 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorA oorD 912637 - 912332 - | 2-oxoglutarate-acceptor oxidoreductase subunit OorD sucD 913522 - 912650 - | succinyl-CoA synthetase, alpha subunit CFF8240_0911 914689 - 913532 - | succinyl-CoA synthetase beta chain TERM 812 914218 - 914205 - G 74 -3.1 -5.22039 | TCTAAATTTAAAAAA TCAGC AATA GCTAA AGAGTGGAAGTCTCT CFF8240_0912 915704 - 914784 - | malate dehydrogenase TERM 813 915673 - 915645 - G 79 -10.4 -2.80622 | opp_overlap 915644 915643 915647, overlap 915647 ACACACTTTACGAGA TATGAGCAAGCT TGCGC AGCTTGCTCCTA CATTTCCAGCACCTA CFF8240_0913 917898 - 915706 - | isocitrate dehydrogenase, NADP-dependent CFF8240_0914 919158 - 918085 - | C4-dicarboxylate transporter/malic acid transport protein TERM 814 919106 - 919080 - G 100 -9.8 -4.6709 | opp_overlap 919063, overlap 919063 TAAAACTATATAAAA TTATATTTTTAA AAT TTAAAAATATAA AAACACGGCATTTAG CFF8240_0915 919814 - 919197 - | HAD-superfamily hydrolase, subfamily IA, variant 1 family protein CFF8240_0916 920130 - 919807 - | hypothetical protein CFF8240_0917 921731 - 920301 - | succinate-semialdehyde dehydrogenase(NADP+) TERM 815 920980 - 920996 + g 72 -2.9 -5.25656 | overlap 920982 AACGGAGCATTTCCA CCTAGCT CAA GGCTAAG TTTTTTGATAGTTTT TERM 816 921784 - 921813 + r 75 -9.7 -2.7644 | opp_overlap 921788, overlap 921783 921788 AGTCTGATACGCGCA TAAATTTAAAAAA TTGA TTTTTTAAATTTA ATTTCCAAATTCACT hcp 923185 - 921851 - | hydroxylamine reductase CFF8240_0919 923442 - 924713 + | O-acetylhomoserine sulfhydrylase CFF8240_0920 924746 - 925123 + | BadM/Rrf2 family transcriptional regulator cysK 925134 - 926048 + | cysteine synthase A acpS 926392 - 926045 - | 4'-phosphopantetheinyl transferase fliL 926916 - 926389 - | flagellar basal body-associated protein FliL TERM 817 926546 - 926559 + g 82 -3.1 -5.62045 | opp_overlap 926547, overlap 926547 926553 GTTCTTATGATAATA TCTCT AATA AGAGG TTTTTTCTTATCTAT CFF8240_0924 927858 - 926992 - | fumarylacetoacetate hydrolase family protein CFF8240_0925 929022 - 927859 - | acetylornithine aminotransferase CFF8240_0926 929648 - 929025 - | hypothetical protein TERM 818 929609 - 929592 - G 74 -3.4 -5.35815 | overlap 929593 929605 TATACCAAACAAAAA TCCGCT CAAAGC AGCAGA GGCTATACCTATATA CFF8240_0927 930742 - 929747 - | hypothetical protein TERM 819 929863 - 929841 - G 78 -2 -5.65678 | overlap 929842 929845 ACAAAATATAAAAAA TCAGTTTTTC TAG GAAAAATTGC CGCTTTTATAGCATC TERM 820 931342 - 931326 - g 74 -6.7 -4.38171 | opp_overlap 931329 TATATCATAGCAAAA GAATATA CTT TATATTC GCTGCACGGAAAACT TERM 821 931940 - 931917 - g 77 -3.3 -5.58209 | GCAAATTTAAAAAAA GCTAAATTT GATGCT AAATTTAAC AAATTGTGTATAAAT TERM 822 932085 - 932069 - g 70 -2.3 -5.28755 | AAATATAGCAAAAAA TAACC AAATAAA GGTTA AAAATTTAAAAGAAC CFF8240_0928 931203 - 933170 + | hypothetical protein CFF8240_0929 933517 - 933176 - | hydrogenase expression/synthesis, HypA hypE 934541 - 933531 - | hydrogenase expression/formation protein HypE hypD 935613 - 934525 - | hydrogenase expression/formation protein HypD TERM 823 935520 - 935535 + g 74 -3.3 -5.28755 | GACCACCGCAAATTT CCATT ATATTA AATGG TTTTTTACTCTGTTT hypC 935891 - 935613 - | hydrogenase assembly chaperone HypC/HupF hypB 936679 - 935891 - | hydrogenase accessory protein HypB TERM 824 936395 - 936405 + g 71 -5.4 -4.49314 | GTTTTTTATAGTTGC CTCT AGA AGAG TTGTTTTTCCTGCTC CFF8240_0934 937125 - 936703 - | nickel responsive regulator hypF 939364 - 937139 - | [NiFe] hydrogenase maturation protein HypF CFF8240_0936 940790 - 939351 - | hypothetical protein CFF8240_0937 941326 - 940787 - | hydrogenase maturation protease HydD TERM 825 941288 - 941269 - G 82 -10 -3.66908 | opp_overlap 941265, overlap 941265 TTTTTGTAAAATGAA CGCCGATA CCCT CATCGGCG AACATTACATTACCA TERM 826 941333 - 941314 - G 72 -5.8 -4.29325 | opp_overlap 941314 TACCAATACCTAAAA TAAGCACA CGCA TATGCTTA TTGCTCTTTTGGAAA cybH 942008 - 941331 - | Ni/Fe-hydrogenase, B-type cytochrome subunit TERM 827 941975 - 941990 + g 72 -2.6 -5.28755 | GTCCTATAGAAAACT CATATT CGGC GATATG TTTTTTACTCTCTTT CFF8240_0939 943740 - 942019 - | quinone-reactive Ni/Fe-hydrogenase large chain CFF8240_0940 944895 - 943744 - | quinone-reactive Ni/Fe-hydrogenase small chain TERM 828 944921 - 944933 + r 79 -3.5 -5.59879 | opp_overlap 944921 TGATAATAAGATAAA TTTAT AAA ATAAA TTTTTTGTCTTTGTA CFF8240_0941 945384 - 945073 - | branched-chain amino acid transport protein AzlD CFF8240_0942 946046 - 945384 - | branched-chain amino acid transport protein TERM 829 946153 - 946141 - R 75 -3.5 -5.40464 | opp_overlap 946129, overlap 946135 946129 CATTATAAATAAAAA TAATT TTT AATTA TATTTTAAGGGTGAA TERM 830 946167 - 946200 + r 80 -7.5 -4.55721 | overlap 946169 TATATTTTAAGGGTG AATTTGGAGCGAAGT AAAA ATTCCGCTCCAAATA TTTTATATAAGATTT TERM 831 946169 - 946198 + r 89 -10.1 -3.88029 | overlap 946167 TATTTTAAGGGTGAA TTTGGAGCGAAGT AAAA ATTCCGCTCCAAA TATTTTATATAAGAT CFF8240_0943 948776 - 946203 - | chaperone ClpB TERM 832 946508 - 946494 - G 70 -7.2 -3.8505 | opp_overlap 946494 946496 ACCAAGAGGATTAAA GATGAT CGT ATCATC TAGTCTATTTAAAAA TERM 833 947783 - 947801 + g 74 -5.9 -4.60889 | opp_overlap 947783 947782 947785 TTACTGGCTGGAAAC GACGCTG AAGGG CTGCGTC TTTTTCAAAATACTT CFF8240_0944 948927 - 950240 + | carboxyl-terminal protease purC 950251 - 950964 + | phosphoribosylaminoimidazole-succinocarboxamide synthase purS 951093 - 951323 + | phosphoribosylformylglycinamidine synthase, PurS protein purQ 951326 - 951991 + | phosphoribosylformylglycinamidine synthase subunit I CFF8240_0948 952060 - 953235 + | putative periplasmic protein TERM 834 953577 - 953567 - g 74 -5.4 -4.64844 | CCGATAGATAGAAAA GATC CCA GATC GCTTCCAAAACTCAT CFF8240_0949 953219 - 953896 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase crcB 953893 - 954279 + | CrcB protein CFF8240_0951 954857 - 954306 - | cytolethal distending toxin A/C family protein TERM 835 955684 - 955703 + r 71 -4.3 -4.98255 | gap 1, opp_overlap 955683 955684, overlap 955683 CCTTTAAAAATTAAG CG-GCTCT TTTAC AGAGCGCG TTTTTATGGTTGGGG CFF8240_0954 956289 - 955672 - | cytolethal distending toxin A TERM 836 956474 - 956434 - R 76 -8 -3.85505 | opp_overlap 956435 956435, overlap 956435 956449 TTAGTAATAATATAA CTTTAATATAGTAAATAA ATATG TTATTTACTATATTCAAA TTTAAAACGATAAAT TERM 837 956435 - 956473 + r 75 -9.3 -2.72511 | opp_overlap 956434 956435 956449, overlap 956435 TAGTAATAATATAAC TTTAATATAGTAAATAA ATATG TTATTTACTATATTCAA ATTTAAAACGATAAA TERM 838 956473 - 956435 - R 77 -9.3 -2.9058 | opp_overlap 956435 956435, overlap 956434 956449 TAGTAATAATATAAC TTTAATATAGTAAATAA ATATG TTATTTACTATATTCAA ATTTAAAACGATAAA TERM 839 956435 - 956474 + r 71 -7.7 -3.54543 | gap 1, opp_overlap 956435 956434 956449, overlap 956435 TAGTAATAATATAAC TTT-AATATAGTAAATAA ATATG TTATTTACTATATTCAAA TTTAAAACGATAAAT TERM 840 956564 - 956542 - R 75 -7 -4.08651 | opp_overlap 956542 ATTTTAATTAAATAA GCCGAAAAAA TAT TTTTCACGGC TTTAATATAAGTTAT CFF8240_0955 957127 - 956576 - | cytolethal distending toxin A/C family protein CFF8240_0956 957931 - 957137 - | cytolethal distending toxin CFF8240_0957 958641 - 957940 - | cytolethal distending toxin A TERM 841 958121 - 958134 + g 74 -6.7 -4.4078 | opp_overlap 958121 TTTATCAAAACAGTA CCGTT ACTA AACGG TTTTAATTCCCAAAA CFF8240_0958 958864 - 960717 + | heat shock protein 90 CFF8240_0959 961146 - 960757 - | thiosulfate sulfurtransferase TERM 842 960813 - 960823 + g 70 -4 -5.00616 | TCATGCCGCCGTCTA TGTT TAT AACA TTTTTTACGCCGCCC TERM 843 960854 - 960869 + g 75 -9 -3.4268 | opp_overlap 960853 960852, overlap 960862 TCATCTAGCAAAACC GAAGCC GGGC GGCTTC TATTTCCGCTTCTAC TERM 844 962241 - 962226 - g 71 -3.3 -5.04385 | opp_overlap 962226 CAGACGCTCAAAAAA GCATA ATTTTA TATGC TATTTCGGACTCTGC CFF8240_0960 961493 - 962278 + | methyltransferase TERM 845 962311 - 962321 + T 81 -3.2 -5.77632 | opp_overlap 962305, overlap 962291 962290 CCGGCTAAACTCTGT TGGC AAA GCTA TTTTTTTATACTTTT CFF8240_0961 964387 - 962348 - | UvrD/REP helicase CFF8240_0962 964557 - 964444 - | hypothetical protein CFF8240_0963 964536 - 964721 + | hypothetical protein TERM 846 965526 - 965506 - g 73 -3.9 -5.15969 | TTTCAAGGCAAAAAA GGATTTGTC TAT GACGACTCC CCAAAGCTTACGAAT CFF8240_0964 964978 - 965877 + | hypothetical protein fumC 967341 - 965944 - | fumarate hydratase, class II valS 967516 - 970137 + | valyl-tRNA synthetase CFF8240_0967 970134 - 971102 + | ABC transporter ATP-binding protein TERM 847 971123 - 971111 - g 74 -6.3 -4.41797 | overlap 971105 AAAATGATACCAAAA CTTCT TTT AGAAG CGACTATAGATACAC CFF8240_0968 971099 - 971740 + | D-methionine transport system permease protein MetI TERM 848 971800 - 971776 - T 75 -7.9 -3.93256 | overlap 971778 TATATTTTCAAATAA TATCTAGCTCA TTT CGAGCTAGATC AAAAAATCTCAGGTA TERM 849 971798 - 971778 - T 88 -10.5 -3.55202 | overlap 971776 TATTTTCAAATAATA TCTAGCTCA TTT CGAGCTAGA TCAAAAAATCTCAGG TERM 850 971823 - 971807 - T 91 -7.3 -5.22312 | overlap 971809 AGCTAGATCAAAAAA TCTCAGG TAT CCTGAAA TAATGATCTATCGCG thiD 972590 - 971799 - | phosphomethylpyrimidine kinase TERM 851 973581 - 973568 - g 77 -3.1 -5.57888 | overlap 973572 AGCAAAAAAATAAAA GCACT TGAT AATGC TATCAACACAGACTC CFF8240_0970 972878 - 973651 + | NLPA family lipoprotein TERM 852 973681 - 973661 - f 80 -8.3 -4.14392 | opp_overlap 973661 TTTTAATTTCTAAAA TTTGGGCTT ATG ATGCCCAAA TTTAAGCTAAATTTA TERM 853 973661 - 973681 + F 74 -8.3 -3.62864 | opp_overlap 973661 TTTTAATTTCTAAAA TTTGGGCTT ATG ATGCCCAAA TTTAAGCTAAATTTA TERM 854 973847 - 973827 - g 82 -5.5 -5.31072 | ATAATAGAACAAAAA GAAGATTTA TGC CAAACCTTC GTACGGTTCGTGTTA rpmB 973748 - 973939 + | 50S ribosomal protein L28 CFF8240_0972 973959 - 975089 + | hypothetical protein TERM 855 976178 - 976161 - g 89 -3.5 -5.86061 | gap 1, opp_overlap 976161 TGTTATGAAAAAAAA CAGCT-AT AAA ATAAGCTG TTTTTTGGGTATAGC TERM 856 976161 - 976178 + G 71 -3.5 -5.1287 | gap 1, opp_overlap 976161 TGTTATGAAAAAAAA CAGCTATA AAA TA-AGCTG TTTTTTGGGTATAGC argJ 975082 - 976269 + | bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein CFF8240_0974 976331 - 976558 + | hypothetical protein TERM 857 976574 - 976598 + F 78 -10.1 -2.72471 | overlap 976573 976577 CTAAACACTTTTCTA CGAGTTTGAGT GTT ACTCAAACTCA ATTCTATACTCACCC TERM 858 976577 - 976595 + F 81 -10.4 -2.64051 | overlap 976574 976573 AACACTTTTCTACGA GTTTGAGT GTT ACTCAAAC TCAATTCTATACTCA TERM 859 976626 - 976652 + F 76 -4.6 -5.21506 | CCCCTTATCTTTTTA TTTTGTTTAAGT ATT ATTTAATCAAAA TTTTTATATTATTGT TERM 860 976907 - 976894 - g 87 -6.7 -5.41787 | opp_overlap 976894 976906 GAAAAAATAGAAAAA TCGCA AGAT TGCGA TACTATATCTTCTAT CFF8240_0975 976756 - 977853 + | methyl-accepting chemotaxis protein TERM 861 977859 - 977879 + T 71 -8.3 -3.15047 | opp_overlap 977856 977855 977851 977857, overlap 977856 977857 977856 AGATAAATAAATCTG GAAGCCAGT TTA AATGGCTTC TAATATTTTTTTAAA trmA 978982 - 977879 - | tRNA (uracil-5-)-methyltransferase TERM 862 978158 - 978144 - G 78 -7.2 -4.30978 | overlap 978157 TGTAATCTACGAAAA TCTCTT TTA AAGAGA AAAGCTTCCATAAGT TERM 863 978535 - 978557 + g 77 -9.2 -3.18768 | overlap 978533 TCAAACCGACTTTAA GCTTACTTTG CAA CCAAGTAAGC TCTTGAATTATAGTA TERM 864 978702 - 978688 - G 74 -5.6 -4.76213 | opp_overlap 978687 978688 ACAAATCCAACAAAA CCGGCA TGA TGACGG ATATTTTCTCATCGA CFF8240_0977 979731 - 978985 - | NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg TERM 865 979381 - 979404 + g 70 -4 -4.87328 | gap 1 CATTATAGGTAAAAC GGCTT-TTGTA GCG TATAATAAGCC TTTTATATTTGTATC CFF8240_0978 980837 - 979728 - | ankyrin repeat-containing protein TERM 866 980443 - 980427 - G 76 -4.5 -5.03994 | overlap 980431 GGCCATATATAAAAA TTCATTT GCT AAACGAA TAGCAAAAAATATAG CFF8240_0979 982267 - 980840 - | TrkA domain-containing protein TERM 867 981257 - 981283 + g 93 -4.4 -6.09196 | GCCTATTTTTAGCAG GGGCAACTTTAC GGA GTAAAATAGCTC TTTTTTTCTTTTAAA TERM 868 982658 - 982645 - g 74 -6.7 -4.37711 | GGATCAAATTTAAAA GCCAT ATAG ATGGC AGTATGCACTATTTT TERM 869 983138 - 983151 + G 83 -6.7 -4.84363 | GCCCACTAGAAACGC GCGTA ACGG TACGC TTTTTACTAGTTTCG tgt 982305 - 983429 + | queuine tRNA-ribosyltransferase TERM 870 983476 - 983462 - g 73 -4.2 -4.98758 | overlap 983453 983475 AAAAAGCTAGAAAAA GCATCT AGT AGAAGC GGATATTTCAGCGGG TERM 871 983757 - 983741 - g 73 -4.5 -4.84017 | opp_overlap 983741, overlap 983743 AATTTTTTAGAAAAA TACTTTA AAT TAAAGCA TAATTTTTCTATTTT CFF8240_0981 983426 - 984157 + | hypothetical protein dnaB 985617 - 984217 - | replicative DNA helicase TERM 872 984303 - 984319 + g 70 -4.4 -4.64992 | gap 1, opp_overlap 984303, overlap 984299 GAAATATCACATCAA CGGTACC GGTT GGT-CCG TTTCTATTTTTTCCA ispG 986680 - 985610 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CFF8240_0984 987477 - 986812 - | zinc metalloprotease TERM 873 987433 - 987447 + g 76 -4.3 -5.055 | CTTTACCTTTAATGT GATGT TTTTT ACATC TTTTTTAACGATTAA CFF8240_0985 990541 - 987470 - | type I site-specific deoxyribonuclease HsdR TERM 874 987659 - 987671 + g 75 -4.9 -4.93365 | opp_overlap 987659, overlap 987667 ATAGATTTCATCAAA TTTGA TAG TCAAA TTTTTGATTATGAGC TERM 875 989711 - 989696 - G 79 -4.6 -5.21709 | opp_overlap 989696 989708 TTCTATACCAAAAAA CTGCTG ATAT CTGCAG ACTTTTTTTGCTTTT TERM 876 989708 - 989722 + g 70 -2.1 -5.24129 | opp_overlap 989696, overlap 989696 AAACTGCTGATATCT GCAGA CTTTT TTTGC TTTTTTATCAAACAA CFF8240_0986 991461 - 990538 - | hypothetical protein CFF8240_0987 991985 - 991461 - | hypothetical protein CFF8240_0988 993218 - 992013 - | type I restriction-modification system, S subunit TERM 877 992967 - 992977 + g 74 -5.4 -4.77165 | CCCCATTGGATATCC GCTA GAG TAGC TTTTATTATAGGCAA CFF8240_0989 993423 - 993208 - | hypothetical protein hsdM 994951 - 993446 - | type I restriction-modification system, M subunit TERM 878 994233 - 994250 + g 73 -4.1 -4.86133 | overlap 994235 TGTCCGTTTTTTTCT TGTCCGT AAAG ACGGAAA TTTTTACTATGTATC TERM 879 994774 - 994786 + g 72 -2.7 -5.38054 | overlap 994775 CGCCATACTCGGCTT TTAGA AGT TCTAG TTTTTCTTTGTAAAA CFF8240_0991 995544 - 994957 - | restriction modification system DNA specificity subunit TERM 880 995606 - 995550 - H 91 -8.1 -4.87786 | gap 2, opp_overlap 995562 995566, overlap 995554 995562 TTAATTCCATAAAAA TTAT-CCTT-ATAATTAATGTATTATT GTTAT AATAATACATTAATTATGAAAGTATAA CAAATGAGAATGTAA TERM 881 995601 - 995554 - H 81 -10.5 -2.58667 | gap 1, opp_overlap 995562 995566, overlap 995550 995562 TTCCATAAAAATTAT CCTT-ATAATTAATGTATTATT GTTAT AATAATACATTAATTATGAAAG TATAACAAATGAGAA TERM 882 995592 - 995562 - H 83 -10.1 -3.32536 | opp_overlap 995562 995566, overlap 995554 995550 AAATTATCCTTATAA TTAATGTATTATT GTTAT AATAATACATTAA TTATGAAAGTATAAC TERM 883 995562 - 995592 + H 90 -10.8 -3.32343 | opp_overlap 995562 995554 995550, overlap 995566 AAATTATCCTTATAA TTAATGTATTATTG TTA TAATAATACATTAA TTATGAAAGTATAAC TERM 884 998768 - 998750 - g 70 -8.2 -3.24848 | overlap 998749 998751 AAGATGTTATAAAAG CTAGCCAA AAT TTGGCTAA AGATGACTATCACGG TERM 885 998767 - 998751 - g 72 -9.5 -2.54186 | overlap 998750 998749 AGATGTTATAAAAGC TAGCCAA AAT TTGGCTA AAGATGACTATCACG CFF8240_0992 995635 - 999192 + | hypothetical protein CFF8240_0993 999636 - 999262 - | hypothetical protein TERM 886 999410 - 999394 - Gf 73 -3.7 -5.07567 | overlap 999396 CCAGATGGTAAAAAA CACCTTT GGA AAAGGCA GCAGCTCGAAATGCT TERM 887 999408 - 999396 - Gf 71 -6.3 -4.16351 | overlap 999394 AGATGGTAAAAAACA CCTTT GGA AAAGG CAGCAGCTCGAAATG CFF8240_0994 999605 - 999733 + | hypothetical protein TERM 888 1000222 - 1000239 + Tr 72 -3.3 -5.29885 | GGTATGGCTTTTTTT GGTTGTC ATTT GGCTACC TTTTATTTTTAAATT TERM 889 1001647 - 1001614 - TR 100 -10.5 -4.84529 | opp_overlap 1001618 1001624, overlap 1001618 1001624 TTATAAATTCAAAAA TCTATAAAAAGGGCA AAAA TGCCCTTTTTATTAA TAACATTCTAGCTTG TERM 890 1001643 - 1001618 - TR 100 -13.5 -2.87035 | opp_overlap 1001618 1001624, overlap 1001614 1001624 AAATTCAAAAATCTA TAAAAAGGGCA AAAA TGCCCTTTTTA TTAATAACATTCTAG TERM 891 1001618 - 1001643 + Tr 100 -13.5 -3.19653 | opp_overlap 1001618 1001614 1001624, overlap 1001624 AAATTCAAAAATCTA TAAAAAGGGCA AAAA TGCCCTTTTTA TTAATAACATTCTAG TERM 892 1001637 - 1001624 - TR 91 -8.1 -4.98758 | opp_overlap 1001618 1001624, overlap 1001618 1001614 AAAAATCTATAAAAA GGGCA AAAA TGCCC TTTTTATTAATAACA TERM 893 1001624 - 1001637 + Tr 91 -8.1 -5.1356 | opp_overlap 1001624 1001618 1001614, overlap 1001618 AAAAATCTATAAAAA GGGCA AAAA TGCCC TTTTTATTAATAACA acnB 1004202 - 1001644 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 894 1001679 - 1001704 + g 77 -4.9 -5.07652 | AGTTCGGTACTAGAT TGAAATTTAAA TATT TATAAATTTCA TTTTCTTTTCCAGCA TERM 895 1001801 - 1001784 - G 73 -8.4 -3.57615 | overlap 1001775 CTAACATTGCGCAAA CTGCCG CAAGTT CGGCAG AACCCAGATAAACTT TERM 896 1004331 - 1004309 - H 72 -3.6 -5.28942 | opp_overlap 1004314, overlap 1004310 1004327 TACTTTAAAGAAAAA GTAAATTTAA AAT TTAAATTTAG TATAAAAAAGGATTA TERM 897 1004330 - 1004310 - H 71 -7.1 -3.76281 | opp_overlap 1004314, overlap 1004309 1004327 ACTTTAAAGAAAAAG TAAATTTAA AAT TTAAATTTA GTATAAAAAAGGATT CFF8240_0998 1004351 - 1004809 + | methylated-DNA--protein-cysteine methyltransferase CFF8240_0999 1005892 - 1004876 - | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein TERM 898 1005435 - 1005421 - G 100 -11.4 -4.31164 | opp_overlap 1005420 CGCATATAACAGAAA CCGGAG CAA CTCCGG CTAATTTACACAGAT rplI 1006067 - 1006510 + | 50S ribosomal protein L9 CFF8240_1001 1006510 - 1007052 + | ATP-dependent protease peptidase subunit hslU 1007049 - 1008371 + | ATP-dependent protease ATP-binding subunit TERM 899 1008425 - 1008407 - g 71 -8.8 -2.98714 | opp_overlap 1008407, overlap 1008406 ATAGGCAGGACAAAT GCAGGCAA AAG TAGCCTGC TAAATTATCTCTTAA era 1008368 - 1009237 + | GTP-binding protein Era CFF8240_1004 1009305 - 1010792 + | hypothetical protein TERM 900 1010892 - 1010908 + G 79 -8.1 -3.97947 | TGTTTTTGATTATTT CATATAC TGT GTATATG TTTGTGCTAGATAAA CFF8240_1005 1010792 - 1011421 + | hypothetical protein CFF8240_1006 1011418 - 1011816 + | hypothetical protein CFF8240_1007 1011794 - 1013332 + | type II and III secretion system protein CFF8240_1008 1013329 - 1014144 + | hypothetical protein TERM 901 1014388 - 1014372 - g 70 -2.3 -5.24003 | AAGAAAAAGCAAAAA TAGCT AAACAAA AGCTA GAACAACAAAGAGCT TERM 902 1014763 - 1014753 - g 70 -4 -5.02201 | AAAACAGCATAAAAA TTGA ATC TCAA ACCATAGATATGTCA CFF8240_1009 1014164 - 1015066 + | hypothetical protein CFF8240_1010 1015079 - 1016875 + | type II secretion system protein E TERM 903 1017430 - 1017443 + G 71 -5.3 -4.51699 | overlap 1017426 ACTTTAGTTATTTGC GCTAT AGCA ATAGC TTTTGTACTGCTTAT TERM 904 1017669 - 1017637 - g 84 -8.1 -4.52505 | opp_overlap 1017637 1017645, overlap 1017645 AAGAAAAATGGAAAA TTTAAAAATATATTT GAT AAATATATTTTAAAA GTTTATCTAATAAAA TERM 905 1017661 - 1017645 - g 77 -5.3 -4.87318 | opp_overlap 1017637 1017645, overlap 1017637 TGGAAAATTTAAAAA TATATTT GAT AAATATA TTTTAAAAGTTTATC TERM 906 1017832 - 1017817 - g 75 -4.8 -4.94262 | TATATTAAAAATAAA CTTTTA GGCG TAAAAG TAAATGTACAAAGAG CFF8240_1011 1016872 - 1018113 + | type II secretion system protein CFF8240_1012 1018177 - 1018692 + | methyl-accepting chemotaxis protein TERM 907 1018944 - 1018917 - T 70 -8.6 -2.75825 | overlap 1018904 1018925 GCTTCAAGAAACGGA CTTGAATATAGA AATA TCTACACTCAAG GATTCAAAGGATTAT rsc 1020349 - 1019903 - | GatB/Yqey family protein CFF8240_1016 1021230 - 1020352 - | Ppx/GppA family phosphatase TERM 908 1020512 - 1020537 + g 93 -9.9 -4.26076 | opp_overlap 1020512 TTTTTACCTACTAAA CTATCTTTGTC ATTT GATAAAGATAG TTTTAATAGAGCTGC TERM 909 1020537 - 1020512 - G 73 -7.7 -3.76224 | opp_overlap 1020512 TTTTTACCTACTAAA CTATCTTTGTC ATTT GATAAAGATAG TTTTAATAGAGCTGC CFF8240_1017 1022333 - 1021227 - | polyA polymerase family protein TERM 910 1021465 - 1021487 + gr 70 -2 -5.28826 | overlap 1021469 TATCTGCTAGCTCGC TTTAAAAACG GCT CGTTTATCAA TTTTTTATAGAATTT TERM 911 1022072 - 1022082 + gr 72 -2.6 -5.26155 | CAGTTCTAGGTAGGC TTAT ATC ATAA TTTTTATATTTATAT CFF8240_1018 1022640 - 1022293 - | hypothetical protein CFF8240_1019 1022888 - 1022637 - | hypothetical protein TERM 912 1022824 - 1022850 + g 74 -6.6 -4.30978 | opp_overlap 1022823 ATGTTTTTATAAACT TCAAGGGCGT CATTTCT AAGCCCTTGA TTTTCATAAATTAAA leuB 1023955 - 1022885 - | 3-isopropylmalate dehydrogenase CFF8240_1021 1024459 - 1023980 - | 3-isopropylmalate dehydratase small subunit CFF8240_1022 1025101 - 1024502 - | homogentisate export protein CFF8240_1023 1025724 - 1025110 - | LysE family translocator protein TERM 913 1025173 - 1025161 - G 74 -5.5 -4.81083 | opp_overlap 1025161 TCCAAGTAGTAAAAA CAGCG TTG CGCTA ATCTTATTTATGACT CFF8240_1024 1025834 - 1026310 + | hypothetical protein TERM 914 1026338 - 1026322 - T 77 -6.5 -4.69048 | opp_overlap 1026322 ATAAAATCAAATAAA GCCCC AAATCAA GGGGC TGTATCGCTTAGTGA ansB 1027390 - 1026347 - | L-asparaginase II TERM 915 1026537 - 1026549 + g 77 -9.1 -3.15592 | opp_overlap 1026537, overlap 1026536 CTAACAACAATTACA CCGTC TTT GACGG CTTTTGCTAAAGCTT TERM 916 1026549 - 1026537 - G 74 -9.1 -3.0663 | opp_overlap 1026537 1026536 CTAACAACAATTACA CCGTC TTT GACGG CTTTTGCTAAAGCTT CFF8240_1026 1028807 - 1027500 - | RmuC family protein TERM 917 1029108 - 1029123 + G 72 -4.8 -4.72029 | opp_overlap 1029108 TCTGGATATAAAAAG TACTAT AAAT ATAGTA TTTTCTTCACTTAGC CFF8240_1027 1028926 - 1029846 + | putative permease CFF8240_1028 1030186 - 1029878 - | hypothetical protein alaS 1030305 - 1032842 + | alanyl-tRNA synthetase CFF8240_1030 1032839 - 1033333 + | hypothetical protein CFF8240_1031 1033330 - 1033878 + | Maf-like protein TERM 918 1034762 - 1034746 - g 74 -6.5 -4.4281 | opp_overlap 1034748, overlap 1034748 TCAAAGTACAAGAAA TAGCGCA AAA TGCGCTT AAATTTGGATATAAC TERM 919 1034748 - 1034760 + G 77 -9.1 -3.30038 | opp_overlap 1034746 1034748 AAAGTACAAGAAATA GCGCA AAA TGCGC TTAAATTTGGATATA TERM 920 1034760 - 1034748 - g 81 -9.1 -3.80515 | opp_overlap 1034748, overlap 1034746 AAAGTACAAGAAATA GCGCA AAA TGCGC TTAAATTTGGATATA CFF8240_1032 1033875 - 1035812 + | penicillin-binding protein 1A (PBP-1a) (PBP1a) CFF8240_1033 1036152 - 1035814 - | hypothetical protein rplS 1036616 - 1036260 - | 50S ribosomal protein L19 trmD 1037311 - 1036613 - | tRNA (guanine-N(1)-)-methyltransferase rimM 1037845 - 1037315 - | 16S rRNA processing protein RimM CFF8240_1037 1038080 - 1037835 - | hypothetical protein rpsP 1038313 - 1038086 - | 30S ribosomal protein S16 TERM 921 1038336 - 1038382 + r 100 -12.6 -4.03413 | opp_overlap 1038353 1038375, overlap 1038374 CTCCTCATTATTTTT TTTAAGGCTTAATTATAGCTAA ATT TTAGCCATAAGTAAGCCCTAAA TTTATCTAGGGCGAT TERM 922 1038394 - 1038375 - R 75 -8.6 -3.45945 | opp_overlap 1038336 1038374 TTTAGCCATAAGTAA GCCCTAAA TTTA TCTAGGGC GATTTGAATTTGCCA ffh 1039730 - 1038384 - | signal recognition particle protein CFF8240_1040 1040049 - 1041452 + | nadc family protein CFF8240_1041 1041532 - 1043727 + | methyl-accepting chemotaxis protein TERM 923 1043736 - 1043761 + T 100 -11.3 -4.95896 | opp_overlap 1043736 ATTCTAAAAATTTAA GATACTCCGAA ATTA TTTGGAGTATC TTTTTATAAATTTAT TERM 924 1043761 - 1043736 - T 79 -9.1 -3.45433 | opp_overlap 1043736 ATTCTAAAAATTTAA GATACTCCGAA ATTA TTTGGAGTATC TTTTTATAAATTTAT CFF8240_1042 1044549 - 1043785 - | pseudouridine synthase TERM 925 1044526 - 1044506 - G 72 -8.3 -3.35046 | opp_overlap 1044507, overlap 1044504 1044507 TCATTGTTTGAAATA CCTTCTTGC AAA GCAAGAAGT TTATATGCTTTTTCT TERM 926 1044507 - 1044525 + g 100 -11.8 -4.23207 | opp_overlap 1044506 1044504 1044507 CATTGTTTGAAATAC CTTCTTGC AAA GCAAGAAG TTTATATGCTTTTTC TERM 927 1044525 - 1044507 - G 84 -11.8 -2.60813 | opp_overlap 1044507, overlap 1044506 1044504 CATTGTTTGAAATAC CTTCTTGC AAA GCAAGAAG TTTATATGCTTTTTC CFF8240_1043 1045734 - 1044559 - | 3-deoxy-D-manno-octulosonic-acid transferase CFF8240_1044 1045460 - 1045684 + | hypothetical protein CFF8240_1045 1046399 - 1045686 - | hypothetical protein TERM 928 1045991 - 1046002 + gr 95 -3 -6.23209 | overlap 1045981 GTTCGCTAAGAGTTT TAGA TATC TCTA TTTTTTTTTGCTTAA CFF8240_1046 1047139 - 1046417 - | hypothetical protein TERM 929 1046856 - 1046872 + g 84 -6.7 -5.06103 | opp_overlap 1046858 AAATTTGTATGCATA GATATAA GAC TTATATC TTTTTTAAGCATTAT glyQ 1047993 - 1047136 - | glycyl-tRNA synthetase subunit alpha CFF8240_1048 1048510 - 1048040 - | hypothetical protein purE 1049019 - 1048522 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 930 1048560 - 1048575 + g 75 -4.7 -4.85918 | TTTTAGAATCCTCTT CAAGC ATTAAA GCTTG TTTTGTTCTATCGTC CFF8240_1050 1050416 - 1049160 - | putative protease TERM 931 1049518 - 1049532 + g 72 -2.8 -5.27399 | TGTATCAAATATCCA TCGC TAAATCC GCGA TTTTTTAATGTATTG CFF8240_1051 1051147 - 1050413 - | hypothetical protein TERM 932 1051213 - 1051199 - H 81 -7.2 -4.66264 | opp_overlap 1051199 1051198 TAAAATTTCTAAAAA TTGCTT TAC AAGCAA CATTTTTTTTAAATT TERM 933 1051992 - 1051953 - H 74 -6.8 -4.43272 | opp_overlap 1051958, overlap 1051946 1051958 ATTTAAAATTTAAAA TAAAATTAGCTATATATA TTTT TATATGTAGTTAATTTTA AAGTTTTAGCTGATT TERM 934 1051958 - 1051987 + H 74 -6.7 -4.28049 | opp_overlap 1051958 1051953 AAATTTAAAATAAAA TTAGCTATATATA TTTT TATATGTAGTTAA TTTTAAAGTTTTAGC CFF8240_1053 1052135 - 1052914 + | histidinol phosphate phosphatase, HisJ TERM 935 1053944 - 1053930 - g 73 -7.1 -4.07568 | opp_overlap 1053937, overlap 1053937 GGTGGTGTTTTAAAA CACGC AAGAA GCGTG GCTGCATTTACAAAC glnA 1053003 - 1054430 + | glutamine synthetase, type I TERM 936 1054472 - 1054441 - T 84 -9.6 -3.65902 | GTTAGTTTATGTAAA TTTAGTTTTGGGGC AAAA ACCCTAAAACTAAA TAAATATCAATATAA CFF8240_1055 1054930 - 1054493 - | hypothetical protein TERM 937 1055076 - 1055049 - R 70 -8.6 -2.7648 | opp_overlap 1055056, overlap 1055056 ATTATAAAAATAGAG TAAAAAAGGGTT ATAA AACCCTTTTTTT ATATCGCAGTACTAG TERM 938 1055069 - 1055056 - R 88 -6.7 -5.28755 | opp_overlap 1055056, overlap 1055049 AAATAGAGTAAAAAA GGGTT ATAA AACCC TTTTTTTATATCGCA TERM 939 1055056 - 1055069 + r 100 -6.7 -5.71712 | opp_overlap 1055056 1055049 AAATAGAGTAAAAAA GGGTT ATAA AACCC TTTTTTTATATCGCA CFF8240_1056 1055593 - 1055075 - | ankyrin repeat-containing protein TERM 940 1055671 - 1055652 - R 95 -10.8 -4.24002 | opp_overlap 1055645, overlap 1055664 TTTTAAATTTGAAAA GCTGCTTA AAAA TAAGCAGC TTAAGAATTATTTAA CFF8240_1057 1057147 - 1055705 - | catalase TERM 941 1055737 - 1055763 + g 73 -3.7 -5.03314 | overlap 1055741 AAGAAAGTGCCGCTT TTACTCCTGCT GCGTA AGCCGGATTAA TTTTTTCAAAGTGAC TERM 942 1057337 - 1057377 + r 90 -8.6 -4.73864 | opp_overlap 1057337 CTAAATAGAAATAAA TTCCATACTCTAGATA AATATTTGG TATATAGAGTATGGAA TTTTGTATTAATTAA TERM 943 1057377 - 1057337 - R 90 -8.6 -4.73432 | opp_overlap 1057337 CTAAATAGAAATAAA TTCCATACTCTAGATA AATATTTGG TATATAGAGTATGGAA TTTTGTATTAATTAA TERM 944 1059616 - 1059582 - R 86 -10.2 -3.57523 | opp_overlap 1059586 1059587 1059592, overlap 1059564 1059568 1059587 1059592 ATTAATATAATAATA TAATATTAAACGCCTT TTA AAGGCGTTTAAATTTA ATAAAATAAAAATAA TERM 945 1059586 - 1059612 + r 93 -11 -3.74693 | opp_overlap 1059568 1059582 1059587 1059592, overlap 1059587 1059592 ATATAATAATATAAT ATTAAACGCCTT TTA AAGGCGTTTAAA TTTAATAAAATAAAA TERM 946 1059611 - 1059587 - R 100 -14.5 -3.51442 | opp_overlap 1059587 1059586 1059592, overlap 1059568 1059582 1059592 TATAATAATATAATA TTAAACGCCTT TTA AAGGCGTTTAA ATTTAATAAAATAAA TERM 947 1059587 - 1059611 + r 100 -14.5 -2.84602 | opp_overlap 1059568 1059582 1059587 1059592, overlap 1059586 1059592 TATAATAATATAATA TTAAACGCCTT TTA AAGGCGTTTAA ATTTAATAAAATAAA TERM 948 1059606 - 1059592 - R 91 -10 -4.00882 | opp_overlap 1059587 1059586 1059592, overlap 1059587 1059582 TAATATAATATTAAA CGCCTT TTA AAGGCG TTTAAATTTAATAAA TERM 949 1059592 - 1059606 + r 89 -10 -3.87149 | opp_overlap 1059592 1059587 1059582, overlap 1059587 1059586 TAATATAATATTAAA CGCCTT TTA AAGGCG TTTAAATTTAATAAA lon 1062053 - 1059657 - | ATP-dependent protease La TERM 950 1060277 - 1060293 + g 76 -3.8 -5.30575 | opp_overlap 1060277, overlap 1060284 1060285 TATCTATCTCAAATA CTTTTT TATCC AAAAAG TTTTTTAAATTTTTA CFF8240_1061 1062709 - 1062062 - | hypothetical protein CFF8240_1062 1062857 - 1063624 + | IclR family transcriptional regulator CFF8240_1063 1063851 - 1064738 + | dihydrodipicolinate synthase, putative TERM 951 1065901 - 1065885 - g 72 -5.1 -4.70626 | TAATAAGCGTAAAAA GATATGC GCA GCCTATC ACCCAAAAAGGTCTT CFF8240_1064 1064735 - 1066252 + | altronate hydrolase TERM 952 1066748 - 1066762 + G 73 -8.6 -3.14931 | opp_overlap 1066748 1066747 1066750, overlap 1066738 ACGCTGCTGCAAAAG GAGCTA TAC TAGCTC TTAGTAGAGAGTGGG TERM 953 1066762 - 1066748 - g 71 -8.6 -3.04517 | opp_overlap 1066738 1066748, overlap 1066747 1066750 ACGCTGCTGCAAAAG GAGCTA TAC TAGCTC TTAGTAGAGAGTGGG TERM 954 1066843 - 1066825 - g 79 -10.2 -2.80817 | opp_overlap 1066825, overlap 1066822 1066820 AACGCGATAATAGTA GCGGAGTG CTA CACGCCGC TTTATGAAAACTGGA TERM 955 1066825 - 1066843 + G 87 -10.2 -3.86897 | opp_overlap 1066822 1066825 1066820 AACGCGATAATAGTA GCGGAGTG CTA CACGCCGC TTTATGAAAACTGGA TERM 956 1066960 - 1066946 - g 79 -10 -3.28866 | opp_overlap 1066946, overlap 1066944 1066942 CCACAGTCAAAGAGA TAGCCG ATA CGGCTA TTTTTTTATTATCCG TERM 957 1066946 - 1066960 + G 100 -10 -5.88565 | opp_overlap 1066946 1066944 1066942 CCACAGTCAAAGAGA TAGCCG ATA CGGCTA TTTTTTTATTATCCG CFF8240_1065 1066273 - 1067049 + | short chain dehydrogenase fucP 1067060 - 1068259 + | L-fucose:H+ symporter permease CFF8240_1067 1068285 - 1069388 + | hypothetical protein CFF8240_1068 1069498 - 1069884 + | flagellar assembly protein FliW TERM 958 1069909 - 1069882 - f 100 -12.2 -4.85782 | opp_overlap 1069884 CTTCTTAAAAAGAAA TAATTTAGTGGC AAAA GCCACTAAACTA CTATGAAACATGCTT CFF8240_1069 1069912 - 1070586 + | prepilin-type N-terminal cleavage/methylation domain-containing protein CFF8240_1070 1070586 - 1071512 + | prepilin-type N-terminal cleavage/methylation domain-containing protein CFF8240_1071 1071512 - 1071991 + | hypothetical protein CFF8240_1072 1072035 - 1072565 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 959 1072574 - 1072601 + T 100 -12.8 -5.59564 | TTATTAGAAAAGTTT GCTTTCTGGGGT ATTA ACTCCGGAAAGC TTTTTTTAAATTTAT CFF8240_1073 1073894 - 1072620 - | aminoacyl-histidine dipeptidase CFF8240_1074 1073958 - 1074140 + | hypothetical protein TERM 960 1074404 - 1074383 - g 73 -4.4 -4.90471 | ATTTAAAAGATAAAA TTGTAGCC GATGTA GGCTGCAA TAACGGATATTATAT CFF8240_1075 1074124 - 1074972 + | hypothetical protein CFF8240_1077 1074984 - 1075493 + | hypothetical protein TERM 961 1075486 - 1075470 - T 75 -8.7 -3.42231 | AAACAAAATGAGCAA GCAGCCT CAA AAGCTGC TAAATAGCCTGCATC CFF8240_1076 1076076 - 1075486 - | metallo-beta-lactamase family protein TERM 962 1076883 - 1076871 - g 89 -6.3 -5.69473 | overlap 1076875 TAGAGTAGAAAAAAA TAGCT TTA AGCTA AATCCGGTACCGATT nadE 1076167 - 1076913 + | NAD+ synthetase CFF8240_1079 1076927 - 1078060 + | wbgx protein TERM 963 1078762 - 1078752 - g 79 -4 -5.47399 | TTAAGGTTAAAAAAA CTAT TTG ATAG CTGCTTAGGTATAGA lpxK 1078053 - 1078997 + | tetraacyldisaccharide 4'-kinase argB 1079023 - 1079865 + | acetylglutamate kinase TERM 964 1079913 - 1079896 - g 72 -2.7 -5.23316 | CACCAGATGAAAAAA TAGCAAA TAAG TTGGCTA AAGAGTTAGTAGATA TERM 965 1081030 - 1081012 - g 80 -2.5 -5.65496 | gap 1, opp_overlap 1081012 TAGGAAAAATAAAAA TTGCTTCG AACG CGAA-CAA TATATTAACGGAACT CFF8240_1082 1079862 - 1081604 + | threonine synthase TERM 966 1081819 - 1081806 - g 71 -5.2 -4.54821 | ACGTGAATCACAAAA GCGG AACCGA CCGC ATAAATGAAGCAGCG TERM 967 1082271 - 1082256 - g 77 -3.3 -5.48623 | AAATACAAACAAAAA GTATC GGAATA GATAC AAAAGAAGATCTTAA kdsB 1081601 - 1082323 + | 3-deoxy-manno-octulosonate cytidylyltransferase CFF8240_1084 1082376 - 1082726 + | hypothetical protein TERM 968 1082820 - 1082844 + F 70 -5.2 -4.51224 | opp_overlap 1082820 AATCAGCACAAAACG TATATCATAA ACTAC TTGTGATATA TTTATTGTTGCTATT CFF8240_1085 1082891 - 1083850 + | GGDEF domain-containing protein CFF8240_1086 1083885 - 1084850 + | diguanylate cyclase TERM 969 1084882 - 1084859 - T 100 -10.4 -5.1517 | opp_overlap 1084862 AAAATAAACTAAAAA TAAGCAGCTT TTTA AAGCCGCTTA AATTTAAATATCTTC CFF8240_1087 1086634 - 1084886 - | thiol:disulfide interchange protein DsbD TERM 970 1084947 - 1084957 + g 82 -3.2 -5.59879 | CCTACAAGCTGTTTT GAGT TCA GCTC TTTTTTGTCTTTATA TERM 971 1087575 - 1087562 - g 74 -5.3 -4.68384 | opp_overlap 1087562 ACTTATGGAAGAAAA TCTCA GAAA TGAGA ATTTAAAACGTATAA CFF8240_1088 1086768 - 1087598 + | PvdS TERM 972 1087701 - 1087728 + T 80 -8.5 -3.96291 | ATATATCTTTGCATT TGGAGTTACGA ATTTAA TCGCAACTCCA TTTATAGAATTTATA dnaK 1089631 - 1087751 - | molecular chaperone DnaK TERM 973 1089222 - 1089234 + g 73 -9.1 -2.94099 | opp_overlap 1089220 1089221 GGCACCGTGATAACG GCGTC CAC GACGC TCTCTCCTAAAAACG grpE 1090191 - 1089670 - | co-chaperone GrpE CFF8240_1091 1090976 - 1090188 - | heat-inducible transcription repressor TERM 974 1090428 - 1090444 + g 74 -5.2 -4.80396 | TTTTTCATTTTCTTG GAAGTA AATTC TACTTC TTTTTAACTCTTTTA TERM 975 1090899 - 1090914 + g 82 -9 -4.00868 | CGTTCCAAGTTCGCT TGAGCC TATA GGCTCA TTTGCTTCTAAGTAA TERM 976 1091168 - 1091192 + H 73 -4.5 -5.08169 | opp_overlap 1091172 1091175, overlap 1091166 1091165 1091189 TATTTAATATATTTA TATATCATATA TAG TATATAATATA TTTTTTAAAGTATAT CFF8240_1092 1091345 - 1091491 + | hypothetical protein TERM 977 1091480 - 1091467 - T 90 -3.1 -6.12458 | TAAAAAAATAAAAAA GGCTT TAGG AAACC GCTTTGAGTAAATTA CFF8240_1093 1091894 - 1091661 - | hypothetical protein CFF8240_1094 1092907 - 1091891 - | hypothetical protein TERM 978 1092394 - 1092380 - G 70 -3.6 -4.93877 | opp_overlap 1092380 GTTCATCAAATAAAA CATATA TTC CATATG CTTGTCCTCAAAAAG flhA 1095064 - 1092917 - | flagellar biosynthesis protein FlhA CFF8240_1096 1095495 - 1095091 - | BadM/Rrf2 family transcriptional regulator rpsO 1095667 - 1095939 + | 30S ribosomal protein S15 TERM 979 1095962 - 1095940 - f 86 -9.2 -4.19276 | opp_overlap 1095944, overlap 1095944 ATCAGAGATAAATAA TAAAGCCCTA TTT TGGGGCTTTA ACTATGATAAAAGCT TERM 980 1095958 - 1095944 - f 75 -5.6 -4.65458 | opp_overlap 1095944, overlap 1095940 GAGATAAATAATAAA GCCCTA TTT TGGGGC TTTAACTATGATAAA TERM 981 1095944 - 1095958 + F 73 -7.8 -3.727 | opp_overlap 1095940 1095944 GAGATAAATAATAAA GCCCTA TTT TGGGGC TTTAACTATGATAAA TERM 982 1096781 - 1096796 + GF 75 -4.8 -5.00616 | opp_overlap 1096779 1096781 ATTTGTAAAACAAGA TGATAA TGGA TTATCA TTTTTTAGCGGCGGA CFF8240_1098 1095966 - 1096883 + | para-aminobenzoate synthase component I TERM 983 1097154 - 1097134 - gT 74 -3.3 -5.32882 | GACTACGATAAAAAA TATCTCGAT AGA AGCAAGATA GAAGCAGTAAAATCC CFF8240_1099 1096849 - 1097436 + | hypothetical protein TERM 984 1097446 - 1097416 - T 100 -13 -4.2349 | opp_overlap 1097403 1097438, overlap 1097438 TTTTTAGAGCTAAAA TTATTTAAATTTAG CTA CTAAATTTAAATAA ATAGATCAAATTTAT CFF8240_1100 1098119 - 1097484 - | HAD family hydrolase TERM 985 1097976 - 1097947 - G 100 -10.9 -5.19261 | opp_overlap 1097946 1097945 1097948, overlap 1097914 1097948 AAAGGCATCAAAAAA TGTTCTTGATATG CATT CATATCAAGAACT CCTTTTGCATAATCC TERM 986 1097975 - 1097948 - G 100 -14.4 -3.6993 | opp_overlap 1097946 1097945 1097948, overlap 1097947 AAGGCATCAAAAAAT GTTCTTGATATG CATT CATATCAAGAAC TCCTTTTGCATAATC TERM 987 1097948 - 1097975 + g 93 -14.4 -3.11922 | opp_overlap 1097948 1097947, overlap 1097946 1097945 AAGGCATCAAAAAAT GTTCTTGATATG CATT CATATCAAGAAC TCCTTTTGCATAATC CFF8240_1101 1099104 - 1098103 - | ABC transport system ATP-binding protein CFF8240_1102 1099885 - 1099106 - | ABC transporter, permease protein CFF8240_1103 1100724 - 1099882 - | ABC transporter, permease protein CFF8240_1104 1101524 - 1100721 - | hypothetical protein TERM 988 1101250 - 1101260 + g 83 -8.2 -4.28774 | ATCCAGTAATACGCT GCCG CGC CGGC TTTTAAATTAGCTAG TERM 989 1103185 - 1103175 - R 72 -6.8 -4.08692 | TAACGCCCTCCAAAA TCGC TAT GCGA CCAAAACTTTGACCA CFF8240_1108 1103471 - 1103178 - | ABC transporter, periplasmic substrate-binding protein CFF8240_1109 1104247 - 1103543 - | methyltransferase, putative ribF 1105125 - 1104244 - | bifunctional riboflavin kinase/FMN adenylyltransferase rrmJ 1105795 - 1105094 - | ribosomal RNA large subunit methyltransferase J ligA 1107729 - 1105792 - | NAD-dependent DNA ligase LigA TERM 990 1106056 - 1106069 + g 72 -2.5 -5.33866 | overlap 1106038 TGGAGTGATAAATTC TAAAA GTTC TTTTA TTTTTTCTAAATTTA TERM 991 1106470 - 1106488 + g 71 -6.8 -4.18161 | AATAGAACTCACGAC TCTAGCTT TGC AAGTTAGA TTTTGACACTTTATA CFF8240_1113 1108872 - 1107730 - | dihydropteroate synthase TERM 992 1108127 - 1108137 + g 70 -2.4 -5.28176 | TTTTGTTGCATAGTT TGCG GAT CGCC TTTTTTATGCATAAG CFF8240_1114 1109486 - 1108869 - | DNA polymerase III subunit delta' TERM 993 1109021 - 1108999 - G 81 -10 -3.35349 | opp_overlap 1108998 1108999, overlap 1108987 AAAGAAGCTCCAGAA TCGATAGCTT CGC AAACTATCGA CTTTACTAAGTTTAG CFF8240_1115 1110037 - 1109495 - | hypothetical protein CFF8240_1116 1111251 - 1110037 - | aspartate kinase TERM 994 1110103 - 1110113 + g 76 -4 -5.30616 | ATATTTTGATGCCAC TATC ATA GATA TTTTTATTTCACTAG TERM 995 1110186 - 1110176 - G 74 -5.4 -4.70879 | GCCAAAGTTGAAAAA GCAA GAC TTGC TACGCCGCTATGACT CFF8240_1117 1111721 - 1111251 - | dinucleoside polyphosphate hydrolase TERM 996 1111688 - 1111704 + g 70 -2.3 -5.24799 | ATAGGATAACTGCTG CTACA TTTGGTC TGTAG TTTTTCTCTTTATCC CFF8240_1118 1111836 - 1112876 + | coproporphyrinogen III oxidase CFF8240_1119 1112932 - 1113387 + | sec-independent translocase TERM 997 1113732 - 1113742 + G 71 -3.2 -5.20606 | ACTTTTATGTTTTTA GTAG GAG CTGC TTTTTGTTACTATTT tatC 1113387 - 1114142 + | twin arginine-targeting protein translocase TatC TERM 998 1114692 - 1114676 - g 73 -7.9 -3.80855 | overlap 1114672 TTTGCTAAAAATGAA GGCGCTG TCG CAGCTCC AACCGCAAGCTTACA queA 1114139 - 1115158 + | S-adenosylmethionine:tRNA ribosyltransferase-isomerase TERM 999 1115591 - 1115572 - g 93 -9.4 -4.40692 | opp_overlap 1115569, overlap 1115569 TGCAAAAAATAATAA CGTAGTTA TATT TAACTACG ATCCAAAACAGCACA CFF8240_1123 1115168 - 1116412 + | hypothetical protein CFF8240_1122 1117261 - 1116398 - | NOL1\NOP2\sun family protein TERM 1000 1116669 - 1116679 + g 76 -4 -5.29846 | GATATGTTTTTTATC TCTT TGT AAGA TTTTTCTTTAAAGTT TERM 1001 1116763 - 1116782 + g 70 -7.2 -3.8147 | opp_overlap 1116763, overlap 1116762 ATTTTTCATAACAAG TGCGAGAA ACGC TTCTTGCA TCTTTGTTATATGTC CFF8240_1124 1117643 - 1117269 - | Holliday junction resolvase-like protein CFF8240_1125 1118407 - 1117640 - | SMF family protein CFF8240_1126 1119554 - 1118391 - | putative periplasmic protein TERM 1002 1118916 - 1118901 - G 74 -6.2 -4.62002 | opp_overlap 1118900 1118901 ATGAACCATATAAAA CTCAAA CTGT TTTGAG ATCTTTACGCTATCT TERM 1003 1119500 - 1119520 + g 93 -9.9 -4.14615 | opp_overlap 1119500 1119508, overlap 1119508 CTATACCGATATAAA CTAAAAAAG CCC CTTTTTTAG TTTTAGGGGCTTTTT TERM 1004 1119520 - 1119500 - G 87 -9.9 -4.07868 | opp_overlap 1119500 1119508, overlap 1119508 CTATACCGATATAAA CTAAAAAAG CCC CTTTTTTAG TTTTAGGGGCTTTTT TERM 1005 1119530 - 1119508 - G 77 -3.4 -5.4387 | opp_overlap 1119500 1119508, overlap 1119500 ATATAAACTAAAAAA GCCCCT TTTTTAGTTTT AGGGGC TTTTTTTCTCGACCT TERM 1006 1119508 - 1119530 + g 82 -3.4 -5.61596 | opp_overlap 1119500 1119508, overlap 1119500 ATATAAACTAAAAAA GCCCCT TTTTTAGTTTT AGGGGC TTTTTTTCTCGACCT ilvC 1120577 - 1119555 - | ketol-acid reductoisomerase TERM 1007 1120567 - 1120580 + g 70 -3.9 -4.86862 | TTGTCGTAATAAACT GTTAT CGCC ATAAC TTTTCCTTTTTTAAA TERM 1008 1120676 - 1120626 - H 91 -10.2 -3.90586 | opp_overlap 1120633, overlap 1120633 ATACTACTGTAGAAA TTTAAAATCACTGAAATTTAAAAA AAT TATTTAAATTTAAGTGATTTAAAA AGCCAAGTGTTGTAA TERM 1009 1120633 - 1120669 + H 74 -8.3 -3.53091 | opp_overlap 1120633 1120626 TGTAGAAATTTAAAA TCACTGAAATTTAAAAA AAT TATTTAAATTTAAGTGA TTTAAAAAGCCAAGT TERM 1010 1120669 - 1120633 - H 81 -8.3 -4.39571 | opp_overlap 1120633, overlap 1120626 TGTAGAAATTTAAAA TCACTGAAATTTAAAAA AAT TATTTAAATTTAAGTGA TTTAAAAAGCCAAGT CFF8240_1128 1120724 - 1121536 + | putative signal transduction protein CFF8240_1129 1121533 - 1123461 + | ribonuclease R TERM 1011 1124053 - 1124065 + G 77 -4.9 -5.16237 | TAGTTTAAACGGAAT TAGTT TTG AACTA TTTTTTAATAAACTT CFF8240_1130 1123454 - 1124467 + | DNA polymerase III subunit delta TERM 1012 1124855 - 1124837 - g 70 -8.2 -3.21814 | AACAAAAGAGAGATA TCAGCTTG GGA CAAGCTAA GCAAAGGTCAAAAAC TERM 1013 1124900 - 1124888 - g 77 -5.5 -5.00884 | overlap 1124899 ATGCCTGCTAAAAAA GAGCT AAA AGCCC CGGAAAAACCGGTTG rpsF 1124540 - 1124926 + | 30S ribosomal protein S6 CFF8240_1132 1124948 - 1125577 + | single-strand DNA-binding protein rpsR 1125590 - 1125850 + | 30S ribosomal protein S18 TERM 1014 1125882 - 1125860 - T 100 -10.7 -4.90471 | opp_overlap 1125860 ATGTAAAACATAAAA GTTTTGGTC TTTAT GACCAAAAC TACTTAAACCAACTT TERM 1015 1125860 - 1125882 + T 84 -10.7 -2.71263 | opp_overlap 1125860 ATGTAAAACATAAAA GTTTTGGTC TTTAT GACCAAAAC TACTTAAACCAACTT dnaJ 1126970 - 1125882 - | chaperone protein DnaJ TERM 1016 1127041 - 1127022 - H 73 -5.2 -4.64763 | CTATCTAAAAAATAA TAAATTTA TCCC TAAATTTA AAAATATTTATATAT CFF8240_1135 1127165 - 1127836 + | transcriptional regulatory protein BaeR TERM 1017 1127979 - 1127958 - g 74 -3 -5.22258 | TAAAGTAAAAGAAAA CCAGTATA ACTCCA TAAACTGG CTACTTTCACTATAC TERM 1018 1128895 - 1128879 - g 74 -3 -5.252 | gap 1 CATCTGTATAAAAAA CAAG-GG AAAT CCGCTTG AAAAACCTATTGAGC CFF8240_1136 1127833 - 1129092 + | two-component sensor recR 1129073 - 1129642 + | recombination protein RecR aroE 1130443 - 1129658 - | shikimate 5-dehydrogenase CFF8240_1139 1131210 - 1130443 - | hypothetical protein TERM 1019 1130729 - 1130742 + g 79 -4.5 -5.28176 | TTTTGAGCTGGTTTA GCTGA AGGC TCGGC TTTTTTCTGAGTCGG CFF8240_1140 1131763 - 1131221 - | hypothetical protein glyA 1133007 - 1131763 - | serine hydroxymethyltransferase TERM 1020 1132839 - 1132858 + g 70 -7.2 -3.89305 | gap 1, overlap 1132837 CACCATAATATCTTT TGCT-AGGG TAT CCCTCAGCA TATTTATTTGTGAGT lysS 1134518 - 1133004 - | lysyl-tRNA synthetase CFF8240_1143 1134993 - 1134529 - | ferric uptake regulation protein cvpA 1135572 - 1134997 - | CvpA family protein TERM 1021 1135235 - 1135221 - G 81 -5.8 -4.91573 | AAAATATAGCAAAAA CTAAAA ATA TTTTAG CGCTTCCTATAAAAA pilT 1136633 - 1135572 - | twitching motility protein PilT TERM 1022 1135809 - 1135796 - G 70 -8.1 -3.21938 | opp_overlap 1135796 TCAAAACTTCATGAA CGGCA AATC TGCCG TTATCTGCTTTTGGC TERM 1023 1135796 - 1135809 + g 73 -8.1 -3.68757 | opp_overlap 1135796 TCAAAACTTCATGAA CGGCA AATC TGCCG TTATCTGCTTTTGGC TERM 1024 1136660 - 1136675 + r 74 -4.8 -5.0133 | overlap 1136649 TTATTTTTGGTACTT CAAAAT ATCT ATTTTG TTTTTTCGGAGCATG gatC 1136924 - 1136637 - | aspartyl/glutamyl-tRNA amidotransferase subunit C TERM 1025 1137538 - 1137522 - g 70 -4.5 -4.64861 | CGCTTTTAAAACAAA TTTTACA AAA TGCAAAA GGAGAGAGCGGTGAT CFF8240_1147 1137146 - 1137706 + | hypothetical protein TERM 1026 1138538 - 1138556 + G 71 -7.5 -3.58159 | opp_overlap 1138541, overlap 1138537 1138541 CGATATTTTCAAACG TAATCCC AAAAG GGGATTA TCTTTACATTTTTGA CFF8240_1148 1137709 - 1138716 + | hypothetical protein CFF8240_1149 1138723 - 1139049 + | hypothetical protein CFF8240_1150 1139036 - 1139668 + | pantothenate kinase TERM 1027 1139955 - 1139943 - g 89 -7.7 -5.29782 | CATAGGTATAAAAAA TAGCG ATA CGCTA GATTACACAAAACCA hisG 1139656 - 1140267 + | ATP phosphoribosyltransferase catalytic subunit brnQ 1140276 - 1141580 + | branched-chain amino acid transport system II carrier protein CFF8240_1153 1141577 - 1142686 + | cytoplasmic membrane protein TERM 1028 1142792 - 1142782 - g 80 -2.6 -5.71712 | TGGTATATAAAAAAA TTTA ATA TAAA TATGGAAGAATTTAA psd 1142683 - 1143474 + | phosphatidylserine decarboxylase CFF8240_1155 1143848 - 1143513 - | NapD CFF8240_1156 1144744 - 1143845 - | putative periplasmic protein CFF8240_1157 1145211 - 1144741 - | 4Fe-4S ferredoxin, iron-sulfur binding TERM 1029 1145123 - 1145145 + g 77 -9.1 -3.16117 | opp_overlap 1145122 1145123, overlap 1145122 TCATTACAATCAAAT TTGCCGCCA AAATA TGGCGGCGG TATTACATTGGATCT napB 1145747 - 1145214 - | periplasmic nitrate reductase, diheme cytochrome c subunit TERM 1030 1145639 - 1145665 + g 76 -3.6 -5.35224 | opp_overlap 1145631 1145641, overlap 1145641 AATCAACGTTTCTAA GACCTATTTCAG TAT CAGAAACAGGGC TTTTATTTTTATCGG napH 1146529 - 1145744 - | quinol dehydrogenase membrane component TERM 1031 1145985 - 1145975 - G 74 -6.8 -4.42788 | GGTAATCGCATAAAA CGCT CCA AGCG GACAGATATGAGAAC napG 1147278 - 1146526 - | quinol dehydrogenase periplasmic component napA 1150058 - 1147281 - | nitrate reductase TERM 1032 1150462 - 1150438 - R 95 -8.7 -4.93968 | opp_overlap 1150443 1150454, overlap 1150439 ATTTATAATTAAAAA TTTAATAAGCC ATT GGCTTATTAAT AAGTAGTTCTAGTAT TERM 1033 1150461 - 1150439 - R 95 -12.2 -3.55296 | opp_overlap 1150443 1150454, overlap 1150438 TTTATAATTAAAAAT TTAATAAGCC ATT GGCTTATTAA TAAGTAGTTCTAGTA TERM 1034 1150443 - 1150457 + r 74 -8.6 -3.20703 | opp_overlap 1150439 1150438, overlap 1150454 TAATTAAAAATTTAA TAAGCC ATT GGCTTA TTAATAAGTAGTTCT CFF8240_1162 1151120 - 1150458 - | amino acid ABC transporter, permease protein PEB1 CFF8240_1163 1151812 - 1151123 - | amino acid ABC transporter, permease protein PEB1 TERM 1035 1151764 - 1151737 - G 85 -10.6 -3.35586 | opp_overlap 1151737 CTAAAGTAAAGCCAA GCCCACTAGCAA ACAT CTGCCAGTGAGC TAATGTATCTTCCCA CFF8240_1164 1152606 - 1151812 - | bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein CFF8240_1165 1153350 - 1152622 - | glutamine transport ATP-binding protein GlnQ TERM 1036 1153550 - 1153523 - R 83 -10 -3.21474 | opp_overlap 1153523, overlap 1153521 1153519 CAAATTTATAACATA GGAGCTTTTATA AATT TAAAAAAGCTCC TTAATATATGGTTAA TERM 1037 1153523 - 1153550 + r 85 -10 -3.35278 | opp_overlap 1153521 1153519 1153523 CAAATTTATAACATA GGAGCTTTTATA AATT TAAAAAAGCTCC TTAATATATGGTTAA ychF 1154665 - 1153562 - | translation-associated GTPase TERM 1038 1154374 - 1154395 + g 71 -6.7 -4.16016 | GTAAAATTACTTCGG TTTCTCTTA TATT TGAGAGAAA TTTATTGCCAAGTCC CFF8240_1167 1156137 - 1154665 - | leucyl aminopeptidase TERM 1039 1155430 - 1155414 - G 70 -3.7 -4.87665 | CTTTACCTACAAAAA CAACCTT TTT AAGACTG TTATCTTTTGGAGTA CFF8240_1168 1156729 - 1156118 - | DedA family protein apt 1157280 - 1156732 - | adenine phosphoribosyltransferase CFF8240_1170 1157626 - 1157294 - | hypothetical protein rpiB 1158066 - 1157620 - | ribose 5-phosphate isomerase B CFF8240_1172 1158765 - 1158121 - | peptidase M50 lepB 1159615 - 1158758 - | signal peptidase I TERM 1040 1159563 - 1159552 - G 71 -3 -5.06472 | ATATAAACAACAAAA CTAT AATT ATAG TCCCGGTCCAACTGC CFF8240_1174 1160463 - 1159612 - | FolD bifunctional protein CFF8240_1175 1160542 - 1160898 + | hypothetical protein hemL 1160895 - 1162166 + | glutamate-1-semialdehyde aminotransferase CFF8240_1177 1162163 - 1162450 + | hypothetical protein CFF8240_1178 1162440 - 1162895 + | hypothetical protein CFF8240_1179 1162885 - 1164108 + | transmembrane transport protein TERM 1041 1164181 - 1164164 - g 74 -3.4 -5.38321 | AAAGAGGAGAAAAAA GACCTC AAATCA GAGATC TCGTCTAAAACTATA TERM 1042 1165394 - 1165367 - g 83 -6.4 -4.94058 | overlap 1165370 GTAACTGAAATAAAA CATCTCTTAAAA GCCG CTTTAAGAGCTG GAAACGACATAGATA CFF8240_1180 1164089 - 1165936 + | hypothetical protein TERM 1043 1166154 - 1166168 + G 75 -5 -4.96848 | TTATACAAAGCGGTA GCTGAA GTA TTTAGC TTTTTATATAGAGCA CFF8240_1181 1165938 - 1166201 + | FlhB domain-containing protein CFF8240_1182 1168011 - 1166203 - | penicillin-binding protein 2 CFF8240_1183 1168442 - 1168008 - | hypothetical protein CFF8240_1184 1168921 - 1168463 - | acetyltransferase TERM 1044 1168546 - 1168524 - G 72 -8.4 -3.50393 | opp_overlap 1168521, overlap 1168507 1168525 TTGCATTTGATACAA TCGGCCCAAA TTT TTTGAGCCGG AAGCTTCTCTTTTGA TERM 1045 1168545 - 1168525 - G 84 -11.9 -2.70022 | opp_overlap 1168521, overlap 1168524 TGCATTTGATACAAT CGGCCCAAA TTT TTTGAGCCG GAAGCTTCTCTTTTG CFF8240_1185 1169524 - 1168928 - | GTPase EngB CFF8240_1186 1169995 - 1169528 - | OstA family protein CFF8240_1187 1170474 - 1169977 - | hypothetical protein CFF8240_1188 1170977 - 1170489 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase hisB 1171546 - 1170974 - | imidazoleglycerol-phosphate dehydratase CFF8240_1190 1172266 - 1171547 - | rare lipoprotein a rlpa TERM 1046 1172264 - 1172250 - G 70 -7.2 -3.79906 | GTACCTGGATAATAA GGTAAA TTT TTTACC ACCGAACAACCCGTA CFF8240_1191 1173527 - 1172313 - | regulatory protein dnir TERM 1047 1172726 - 1172738 + g 73 -4.1 -4.94243 | AATCATACCTCAAAT GAGTA TTG TGCTC TTTTAGTTTTTTTAA CFF8240_1192 1174300 - 1173536 - | YabD TERM 1048 1174180 - 1174200 + g 71 -3.3 -5.03409 | CTTTTGGTAAATCAT TAATATCAG CGC CTGGAATTA TTATTTTTTTTATAC CFF8240_1193 1175544 - 1174297 - | diguanylate cyclase TERM 1049 1175420 - 1175402 - G 84 -3.8 -5.61596 | opp_overlap 1175403 1175405 AGCGCTATAAAAAAA TCATCGTT GTC ATCGACGA TATCTCTTGCTTCAT CFF8240_1194 1177133 - 1175610 - | DNA repair protein RecN TERM 1050 1175847 - 1175831 - G 75 -7.3 -4.15106 | opp_overlap 1175841, overlap 1175804 1175822 1175834 TAGCAAGTTCTAAAA GAACATC TGC GATGCTC ATAGCCTCTTTTCCG TERM 1051 1176164 - 1176176 + g 85 -6.3 -5.22039 | opp_overlap 1176162 1176164 TTGCTAAATTCAACA CTTCA CTA TGAAG TTTTTTAAATTTAAA CFF8240_1195 1177986 - 1177123 - | inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) TERM 1052 1179727 - 1179739 + G 71 -7.7 -3.61922 | TAGTTTTGGTGCGCC TCCAC ACG GTGGA TTTGCCATAGGTCTT aspS 1178165 - 1179919 + | aspartyl-tRNA synthetase adk 1179916 - 1180491 + | adenylate kinase ppa 1180496 - 1181014 + | inorganic pyrophosphatase TERM 1053 1181044 - 1181027 - T 74 -6.9 -4.39318 | opp_overlap 1181028, overlap 1181028 TAACTAAATTTAAAA CGGCGCT TCTT AGCGCCT TTAAATTTAAATATC TERM 1054 1181043 - 1181028 - T 86 -10.4 -3.22506 | opp_overlap 1181028, overlap 1181027 AACTAAATTTAAAAC GGCGCT TCTT AGCGCC TTTAAATTTAAATAT TERM 1055 1181028 - 1181043 + T 90 -10.4 -3.86311 | opp_overlap 1181027 1181028 AACTAAATTTAAAAC GGCGCT TCTT AGCGCC TTTAAATTTAAATAT CFF8240_1199 1181519 - 1181076 - | acetyltransferase CFF8240_1200 1182101 - 1181568 - | hypothetical protein CFF8240_1201 1182962 - 1182189 - | iron chelate ABC transporter ATP-binding protein CFF8240_1202 1183933 - 1182953 - | ABC transporter permease TERM 1056 1183501 - 1183523 + g 72 -2.9 -5.35815 | gap 1, overlap 1183499 1183502 CGACTATAATGCCTG CT-AAAACTA GCAT TAGTTTTGAG TTTTTATTTGATATA CFF8240_1203 1184957 - 1183914 - | putative periplasmic iron siderophore binding protein of ABC transporter CFF8240_1204 1185574 - 1184954 - | hypothetical protein CFF8240_1205 1186166 - 1185567 - | hypothetical protein CFF8240_1206 1188241 - 1186175 - | putative TonB-dependent receptor CFF8240_1207 1188343 - 1189266 + | transcriptional regulatory protein mnmC 1191151 - 1189313 - | 5-methylaminomethyl-2-thiouridine methyltransferase TERM 1057 1190410 - 1190391 - G 78 -7.1 -4.35524 | TTTTTAAATTTAAAA GCAGCCG CTAACC CGGCTAC TCCTGCACCGATAAT CFF8240_1209 1192557 - 1191148 - | N-acetylmuramoyl-L-alanine amidase TERM 1058 1192116 - 1192127 + g 71 -3 -5.1848 | ACTGAGCGACTCTTA TATC ATCA GATA TTTTTTGAGTTGGTT TERM 1059 1192197 - 1192217 + g 71 -5.5 -4.50259 | TTCTTTTATATAGCT CTTTTGTAT TTA ATTCAAAAG TTTTAATCTCTTTTT CFF8240_1210 1193863 - 1192751 - | 2-nitropropane dioxygenase family oxidoreductase tyrS 1195071 - 1193863 - | tyrosyl-tRNA synthetase CFF8240_1212 1197271 - 1195073 - | GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) TERM 1060 1196845 - 1196863 + g 70 -3.9 -5.01042 | gap 1, opp_overlap 1196845 GCATTTTTCTAAAAG TTAGC-GC TGAG GCTGCTAA TTTTTCATTTGAATT rpoZ 1197476 - 1197255 - | DNA-directed RNA polymerase subunit omega pyrH 1198205 - 1197489 - | uridylate kinase CFF8240_1215 1199427 - 1198261 - | M24/M37 family peptidase CFF8240_1216 1200200 - 1199463 - | cell division protein FtsX CFF8240_1217 1200933 - 1200262 - | lipoprotein releasing system ATP-binding protein LolD trmB 1202105 - 1200918 - | tRNA (guanine-N(7))-methyltransferase CFF8240_1219 1203271 - 1202105 - | fibronectin type III domain-containing protein CFF8240_1220 1204223 - 1203252 - | ribosomal pseudouridine synthase CFF8240_1222 1204275 - 1205381 + | cell cycle protein CFF8240_1221 1205935 - 1205378 - | SCO1/SenC family protein TERM 1061 1205917 - 1205927 + g 70 -4 -4.91873 | opp_overlap 1205917 ACACAAAGACTAACA GATA TAG TATC TTTTTCATTCATATC TERM 1062 1206515 - 1206505 - g 70 -4 -4.93316 | CAATAATATGAAAAA TATC GTA GATA TAACATATTCAAAAA CFF8240_1223 1206098 - 1207243 + | methyl-accepting chemotaxis protein TERM 1063 1207285 - 1207252 - T 78 -9.1 -3.30513 | overlap 1207280 TAAATAAATACTTAA TTGATATATTTGAGC TTAG ACTCGAATATATCAA AAAACAATTTGATAA CFF8240_1224 1207705 - 1207373 - | transcriptional regulator CFF8240_1225 1207945 - 1208580 + | YwnB CFF8240_1226 1209667 - 1208684 - | cation diffusion facilitator family transporter TERM 1064 1209800 - 1209839 + r 73 -7.6 -3.73509 | gap 1, opp_overlap 1209806 1209812, overlap 1209806 1209812 TAGCGTATAGATTGT TTTAA-ATTTAAAGCCT CATAAAA AGGCTTTAAATCTTAAA TTTACCATTTGCTGT TERM 1065 1209832 - 1209806 - R 80 -8.9 -3.5525 | opp_overlap 1209800 1209806 1209812, overlap 1209812 ATAGATTGTTTTAAA TTTAAAGCCTC ATAAA AAGGCTTTAAA TCTTAAATTTACCAT TERM 1066 1209806 - 1209832 + r 71 -8.2 -3.20617 | opp_overlap 1209806 1209812, overlap 1209800 1209812 ATAGATTGTTTTAAA TTTAAAGCCT CATAAAA AGGCTTTAAA TCTTAAATTTACCAT CFF8240_1227 1211502 - 1209841 - | methyl-accepting chemotaxis protein TERM 1067 1210571 - 1210581 + g 71 -5.4 -4.5265 | opp_overlap 1210571 ATAGTAGATATCATA GAGT GCC ACTC TTTTATCATCTCATT TERM 1068 1210797 - 1210780 - G 82 -9.9 -3.59262 | TGCCATAGTTCCAAA CTCGTCT TTTG AGACGAG GGGAATAATTTGAGG TERM 1069 1211872 - 1211888 + r 70 -8.7 -2.62396 | overlap 1211863 TCGAACCTGGGACCA TCCGGTT ATG AGCCGGA TGCTCTAACCAACTG putP 1213590 - 1212076 - | sodium/proline symporter CFF8240_1230 1213699 - 1214418 + | His/Glu/Gln/Arg/opine amino acid ABC transporter permease CFF8240_1231 1214411 - 1215139 + | amino acid ABC transporter, ATP-binding protein TERM 1070 1215393 - 1215377 - g 83 -10.9 -3.03124 | TTTGACGCTCTAATA CCTGCTT TAA AAGCAGG TAAAATAGACGCGGT CFF8240_1232 1215155 - 1215883 + | arginine-binding periplasmic protein 1 CFF8240_1233 1215911 - 1216636 + | CjaC TERM 1071 1216660 - 1216636 - f 73 -7.9 -3.71075 | opp_overlap 1216637 1216638, overlap 1216634 1216637 ATACGATCTAAAATA GCTTAGCCCTA CTT TAGGGCTAAAT TTAAGGACTTAAAAT TERM 1072 1216637 - 1216659 + F 80 -9.2 -3.57561 | opp_overlap 1216636 1216634 1216637, overlap 1216638 TACGATCTAAAATAG CTTAGCCCTA CTT TAGGGCTAAA TTTAAGGACTTAAAA TERM 1073 1216659 - 1216637 - f 89 -11.4 -2.81922 | opp_overlap 1216637 1216638, overlap 1216636 1216634 TACGATCTAAAATAG CTTAGCCCTA CTT TAGGGCTAAA TTTAAGGACTTAAAA TERM 1074 1216638 - 1216658 + F 100 -12.7 -2.74322 | opp_overlap 1216637 1216636 1216634, overlap 1216637 ACGATCTAAAATAGC TTAGCCCTA CTT TAGGGCTAA ATTTAAGGACTTAAA CFF8240_1234 1216674 - 1217282 + | thiamine-phosphate pyrophosphorylase TERM 1075 1217808 - 1217819 + G 70 -4.4 -4.72986 | AGTCGTGAAGTTGCG GCTA GATT TAGC TTTTTACTAGCCATC CFF8240_1235 1217283 - 1218059 + | undecaprenol kinase, putative CFF8240_1236 1219419 - 1218139 - | putative aminotransferase CFF8240_1237 1219590 - 1220375 + | ATPase TERM 1076 1220871 - 1220857 - g 71 -7.8 -3.62607 | GATGACAAAAATAGA CCCCTC ATA GAGGAG ATACAAAAAGCTATT CFF8240_1239 1220368 - 1221369 + | sensor histidine kinase dnaE 1225351 - 1221356 - | DNA polymerase III subunit alpha TERM 1077 1221522 - 1221534 + g 74 -3.5 -5.35354 | GAGTGAGCAAGTTGA TAAAT ATA ATTTA TTTTTTGCTTATCTA TERM 1078 1225430 - 1225448 + r 76 -8.8 -3.6869 | opp_overlap 1225431, overlap 1225431 TTTTTGTAGAAAAAA AGGGCTTG AAA CAAGCCCG TTTGAGATTAATCTC TERM 1079 1225431 - 1225447 + r 93 -12.3 -2.80732 | opp_overlap 1225431, overlap 1225430 TTTTGTAGAAAAAAA GGGCTTG AAA CAAGCCC GTTTGAGATTAATCT TERM 1080 1225447 - 1225431 - R 100 -12.3 -5.60993 | opp_overlap 1225431 1225430 TTTTGTAGAAAAAAA GGGCTTG AAA CAAGCCC GTTTGAGATTAATCT CFF8240_1240 1225704 - 1225456 - | RNA-binding region RNP-1 TERM 1081 1229353 - 1229341 - g 74 -6.3 -4.35524 | opp_overlap 1229341 GCTTTAAATTTAAAA CAAGA AGA TCTTG TAGATTTTTCTAAGA CFF8240_1241 1226089 - 1229589 + | proline/pyrroline-5-carboxylate dehydrogenase putP 1229593 - 1231068 + | sodium/proline symporter TERM 1082 1231078 - 1231103 + F 95 -11.3 -4.431 | opp_overlap 1231077 1231076 TTATAACAATATATC TAGTATCACCG ATTT TGGTGATACTA TTTTATAGATAAATA CFF8240_1243 1231318 - 1231818 + | cytochrome c-type protein NrfH TERM 1083 1233454 - 1233444 - g 76 -6.8 -4.57341 | AATCGCTGCTAAAAA CGGT ATA ACCG GCTTCAAAACATCTA nrfA 1231834 - 1233657 + | nitrite reductase (cytochrome; ammonia-forming) TERM 1084 1233677 - 1233700 + T 100 -13.2 -3.671 | TTAAAAGCTGATTTT GCCAGACTTC ATAT GAGGTCTGGC TTTAAAAATTTATTT thiJ 1234308 - 1233769 - | 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme TERM 1085 1234666 - 1234693 + r 89 -10 -3.86311 | opp_overlap 1234668 1234689, overlap 1234668 1234689 ATCTCTAATATAACA AAGCCTTTGAAT TGTA ATTCAAAGGCTA TTTAAATTTAAATAT TERM 1086 1234668 - 1234691 + r 100 -12.6 -3.51234 | opp_overlap 1234668 1234689, overlap 1234666 1234689 CTCTAATATAACAAA GCCTTTGAAT TGTA ATTCAAAGGC TATTTAAATTTAAAT TERM 1087 1234691 - 1234668 - R 100 -12.6 -4.46073 | opp_overlap 1234666 1234668 1234689, overlap 1234689 CTCTAATATAACAAA GCCTTTGAAT TGTA ATTCAAAGGC TATTTAAATTTAAAT TERM 1088 1235069 - 1235103 + r 72 -5.8 -4.59293 | opp_overlap 1235073 1235074, overlap 1235073 1235074 1235079 AGAATTTAATATATA AAAACTAAAAGCCCTA ATA TAGGGCTTTTAATCTA TTTGTTTGCTCTTTC TERM 1089 1235073 - 1235099 + r 90 -11 -3.50491 | opp_overlap 1235073 1235074, overlap 1235069 1235074 1235079 TTTAATATATAAAAA CTAAAAGCCCTA ATA TAGGGCTTTTAA TCTATTTGTTTGCTC TERM 1090 1235099 - 1235073 - R 100 -13.2 -5.10064 | opp_overlap 1235073 1235069 1235074 1235079, overlap 1235074 TTTAATATATAAAAA CTAAAAGCCCTA ATA TAGGGCTTTTAA TCTATTTGTTTGCTC TERM 1091 1235074 - 1235098 + r 100 -14.5 -2.6921 | opp_overlap 1235073 1235074, overlap 1235073 1235069 1235079 TTAATATATAAAAAC TAAAAGCCCTA ATA TAGGGCTTTTA ATCTATTTGTTTGCT TERM 1092 1235098 - 1235074 - R 100 -14.5 -3.64954 | opp_overlap 1235074 1235073 1235069 1235079, overlap 1235073 TTAATATATAAAAAC TAAAAGCCCTA ATA TAGGGCTTTTA ATCTATTTGTTTGCT TERM 1093 1235079 - 1235093 + r 93 -10 -4.47397 | opp_overlap 1235074 1235073, overlap 1235074 1235073 1235069 ATATAAAAACTAAAA GCCCTA ATA TAGGGC TTTTAATCTATTTGT efp 1235670 - 1235101 - | elongation factor P serA 1237262 - 1235685 - | D-3-phosphoglycerate dehydrogenase CFF8240_1249 1237739 - 1237266 - | hypothetical protein rpsA 1239420 - 1237747 - | 30S ribosomal protein S1 ispH 1240360 - 1239521 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 1094 1240199 - 1240220 + g 83 -7.5 -4.69962 | AAGCTCACTTATATC TTTTAATGT TTTA ACATTAAAA TTATTTTTTAGTCTA aroA 1241627 - 1240350 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 1095 1241108 - 1241092 - G 83 -11.5 -2.74514 | TTAAATTTGCAACCA GCCGAGC AAA GCCCGGC TAAAATAAGAGCGGT pheT 1243960 - 1241624 - | phenylalanyl-tRNA synthetase subunit beta TERM 1096 1242804 - 1242820 + g 72 -5.1 -4.70159 | AGTAAAATTTGCTGC GCTCC TGCATAT GGAGC TATTTTTTTATTTTT pheS 1244949 - 1243957 - | phenylalanyl-tRNA synthetase subunit alpha TERM 1097 1244408 - 1244394 - G 76 -6.4 -4.57341 | opp_overlap 1244396, overlap 1244396 AATCGCGTCTAAAAA CAGCTC CCG GAGCTA TCATACGAATAGGCG TERM 1098 1244576 - 1244564 - G 74 -6.3 -4.42667 | opp_overlap 1244575 TCAAAATTATGAAAA TCATC CTC GATGA GAGGTCCGCTTTCTA CFF8240_1255 1245077 - 1245436 + | HIT family protein TERM 1099 1245442 - 1245455 + T 71 -8.1 -3.22298 | opp_overlap 1245442 TAGTTTTTGATATAA GAGCC ATAA GGCTC TTAATACTACATAAA TERM 1100 1245455 - 1245442 - T 73 -8.1 -3.48593 | opp_overlap 1245442 TAGTTTTTGATATAA GAGCC ATAA GGCTC TTAATACTACATAAA CFF8240_1256 1246310 - 1245462 - | hypothetical protein TERM 1101 1245665 - 1245680 + g 77 -4.8 -5.06585 | opp_overlap 1245663 1245665 TACCATGAAAAGATA GATATT CTAA AATATC TTTTTCTATGGTTTG CFF8240_1257 1248518 - 1246332 - | polynucleotide phosphorylase/polyadenylase CFF8240_1258 1249208 - 1248528 - | hypothetical protein CFF8240_1259 1251361 - 1249205 - | putative periplasmic protein TERM 1102 1251104 - 1251114 + g 70 -4 -4.84529 | ACTACCGTCAAAATT CAAA TCA TTTG TTTTTAAATTTATCA CFF8240_1260 1251836 - 1251381 - | RDD protein purD 1253080 - 1251833 - | phosphoribosylamine--glycine ligase TERM 1103 1251860 - 1251883 + g 76 -7.6 -4.04415 | gap 1 CTGATACGCTATATC TTTG-CGGTAT TGC ATACCGTCAAA TTTAATATTCTTTAC hemD 1253972 - 1253337 - | uroporphyrinogen-III synthase CFF8240_1263 1254450 - 1253977 - | Mug G:T/U mismatch-specific DNA glycosylase guaA 1255997 - 1254465 - | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1104 1255704 - 1255722 + g 81 -6 -4.85599 | CTCTTTATGACCTGC TGGAGC TACGTCT GCTCCA TTTTTATGCGCTAAA TERM 1105 1256398 - 1256388 - g 76 -4 -5.39221 | ACAAGAATTAAAAAA TGAT AAT ATCA TAAATCAGATAAAAA CFF8240_1265 1256194 - 1256634 + | hypothetical protein TERM 1106 1258110 - 1258100 - g 74 -6.8 -4.30885 | AAAATAGATGCAAAA GCTC ACC GAGC CAAAGGTAACGCGAA uvrC 1256621 - 1258429 + | excinuclease ABC subunit C CFF8240_1267 1258549 - 1259244 + | hypothetical protein TERM 1107 1259808 - 1259794 - g 76 -4.3 -5.03945 | opp_overlap 1259788, overlap 1259788 TAATAAGCACAAAAA GAGAT TTTGT ATCTC AAATTCTAATCCAAA CFF8240_1268 1259241 - 1262291 + | sensor histidine kinase/response regulator CFF8240_1269 1262298 - 1262678 + | response regulator receiver domain-containing protein CFF8240_1270 1263095 - 1262685 - | protein YhbP TERM 1108 1263382 - 1263366 - g 81 -8.1 -4.08939 | CAATACGGATATAAA TTTGAGT TCA ACTCAAA CGGTCTTAGTGAACA TERM 1109 1263487 - 1263471 - g 84 -8.1 -4.53225 | ATGAAAAAAATCAAA GAAAATG AAC CATTTTC AGATGACACTATAAC CFF8240_1271 1263186 - 1263713 + | putative ATP/GTP-binding protein CFF8240_1272 1263769 - 1264464 + | deoxyuridine triphosphatase domain-containing protein TERM 1110 1264481 - 1264492 + G 74 -2.2 -5.40072 | AAATATAATAAATCT TTGC ATAG GCGA TTTTTTTAAGAAAAA TERM 1111 1265056 - 1265070 + G 79 -5.6 -5.10933 | GTGCTGGCTTAGGAT TCGCTC TTA GCGCGA TTTTATTTTACCTGC CFF8240_1273 1264461 - 1265177 + | putative integral membrane protein TERM 1112 1265266 - 1265282 + G 88 -7.3 -4.9792 | opp_overlap 1265266 GTTTTTTAGTTATAA TATGCGG AGT CTGCATA TTTTTATATGCCATG TERM 1113 1265578 - 1265598 + G 77 -4.7 -5.13648 | opp_overlap 1265556, overlap 1265559 1265557 1265579 TAGCATTATATGCTA TGCCTCTTA TCA TAATAGGCG TTTTATTTATATTTA CFF8240_1274 1265187 - 1266953 + | Na+/Pi-cotransporter CFF8240_1275 1267015 - 1267206 + | hypothetical protein TERM 1114 1267197 - 1267217 + F 76 -8.5 -3.68757 | opp_overlap 1267197 1267199 TGAGATTTTGGAAGA GATAAAATA AAC TATTTTATC TTATATACTTTTAAA TERM 1115 1267217 - 1267197 - f 73 -8.5 -3.03771 | opp_overlap 1267197, overlap 1267199 TGAGATTTTGGAAGA GATAAAATA AAC TATTTTATC TTATATACTTTTAAA TERM 1116 1267279 - 1267242 - f 95 -11.7 -3.2048 | opp_overlap 1267240 1267239 TTTAAATTTTACTAA TTATTTTAGTTGTATCA ATAA TGATATAACTAAAATAA CATATATTACAATTT CFF8240_1276 1267508 - 1267840 + | inner membrane protein YjcH actP 1267837 - 1269450 + | acetate permease TERM 1117 1269481 - 1269452 - T 100 -13.7 -3.76968 | opp_overlap 1269447, overlap 1269453 AAGCTACTCATTAAA TTTTGGTCAGCAG TTTG CTGCTGACCAAAT ACGAATTTAACATAC TERM 1118 1269480 - 1269453 - T 100 -17.2 -2.85699 | opp_overlap 1269447, overlap 1269452 AGCTACTCATTAAAT TTTGGTCAGCAG TTTG CTGCTGACCAAA TACGAATTTAACATA CFF8240_1278 1269898 - 1269488 - | acyl-CoA hydrolase CFF8240_1279 1270997 - 1269984 - | peptide methionine sulfoxide reductase MsrA/msrB TERM 1119 1272346 - 1272366 + G 75 -8.5 -3.39521 | opp_overlap 1272350, overlap 1272350 ATGAAATTGGCAAGC GAAATTTTT GAT AAAAATTTC TTGGATTTTGGTAGA CFF8240_1280 1271173 - 1272993 + | invasion antigen B CFF8240_1281 1273104 - 1273406 + | F0F1 ATP synthase subunit C TERM 1120 1273412 - 1273425 + T 88 -9.5 -4.371 | TTTAGGTTAATTTTA GCCCC GAAT GGGGC TTTTGCTCTACTGCG CFF8240_1283 1274193 - 1273894 - | hypothetical protein CFF8240_1284 1274334 - 1275227 + | AraC family transcriptional regulator CFF8240_1285 1275320 - 1276465 + | NADH-dependent butanol dehydrogenase a TERM 1121 1276497 - 1276468 - f 91 -10.1 -4.26903 | opp_overlap 1276472, overlap 1276469 TTTAGCCTACTAAAA CGATTTTGCACCA AATT CGGTGCAAAATCC ACTACAATATCAAAA TERM 1122 1276496 - 1276469 - f 100 -13.6 -3.1582 | opp_overlap 1276472, overlap 1276468 TTAGCCTACTAAAAC GATTTTGCACCA AATT CGGTGCAAAATC CACTACAATATCAAA CFF8240_1286 1276530 - 1276655 + | hypothetical protein CFF8240_1287 1276774 - 1277019 + | AraC family transcriptional regulator CFF8240_1289 1277142 - 1277363 + | putative periplasmic ATP/GTP-binding protein CFF8240_1288 1277484 - 1277356 - | hypothetical protein TERM 1123 1277738 - 1277769 + H 75 -7.6 -3.96148 | opp_overlap 1277738 1277736 TTATATATTCAAATA TTTAGATAGATA TAATCAAT TATCTATCTAAA TTTATACTAAACACC TERM 1124 1277769 - 1277738 - H 70 -7.6 -3.45231 | opp_overlap 1277738, overlap 1277736 TTATATATTCAAATA TTTAGATAGATA TAATCAAT TATCTATCTAAA TTTATACTAAACACC CFF8240_1290 1277884 - 1278339 + | hypothetical protein CFF8240_1291 1278980 - 1279594 + | hypothetical protein TERM 1125 1280265 - 1280280 + G 79 -4 -5.40625 | TTTATATGTTTTACG CTAGTG TTTT TACTAG TTTTTTATGTAGTAT TERM 1126 1280934 - 1280949 + G 77 -6.2 -4.77036 | opp_overlap 1280948 ACATCTGCTTCATTT TCTCTT CCGA AAGAGA TTTTTGCTACTCAAA CFF8240_1292 1279827 - 1281203 + | sodium- and chloride-dependent transporter TERM 1127 1282357 - 1282345 - g 77 -3.4 -5.48825 | GACCATGGAAAAAAA TAGC AGAAG GCTA TGGAAAAATGGTTCT CFF8240_1293 1281231 - 1283072 + | biotin/lipoyl attachment TERM 1128 1283081 - 1283113 + F 72 -4.8 -4.87318 | opp_overlap 1283084, overlap 1283082 1283084 ATTATAACCCCAAAA AAAGCCGTTTGCAC ATAGC GTGCAGATGGCTAC TTTTTAAATTTTGAA TERM 1129 1283082 - 1283112 + F 73 -8.3 -3.51307 | opp_overlap 1283084, overlap 1283081 1283084 TTATAACCCCAAAAA AAGCCGTTTGCAC ATAGC GTGCAGATGGCTA CTTTTTAAATTTTGA TERM 1130 1283110 - 1283084 - f 95 -7.2 -5.48303 | opp_overlap 1283082 1283081 1283084 ATAACCCCAAAAAAA GCCGTTTGCACA TAG CGTGCAGATGGC TACTTTTTAAATTTT TERM 1131 1283084 - 1283110 + F 90 -10.9 -3.31103 | opp_overlap 1283084, overlap 1283082 1283081 ATAACCCCAAAAAAA GCCGTTTGCAC ATAGC GTGCAGATGGC TACTTTTTAAATTTT pckA 1283229 - 1284806 + | phosphoenolpyruvate carboxykinase argH 1284970 - 1286484 + | argininosuccinate lyase CFF8240_1296 1286652 - 1286885 + | FeoA domain-containing protein TERM 1132 1286868 - 1286893 + F 91 -10.5 -3.99062 | ATGCTAAGCTGTGAA CTGTTGGCTGA AAAA TGAGCCAACAG TTTATCATAGCTCTT TERM 1133 1287939 - 1287949 + F 70 -5.4 -4.57073 | TAGCCGGAGTCGGCA CAGT GAT ACTG TTTTTACCAAACATA feoB 1288593 - 1288991 + | ferrous iron transport protein B TERM 1134 1289319 - 1289334 + G 72 -6.2 -4.34402 | opp_overlap 1289318 1289319 AACGAATAGTAATAG TTATGC CTTT GCATAA TTTTAATATCCCAGC CFF8240_1299 1289057 - 1289680 + | acyl carrier protein phosphodiesterase CFF8240_1300 1290006 - 1290137 + | hypothetical protein CFF8240_1301 1290374 - 1290559 + | hypothetical protein CFF8240_1302 1290815 - 1290681 - | hypothetical protein TERM 1135 1291229 - 1291204 - R 72 -6.3 -4.41897 | opp_overlap 1291204 AATAAAGCACTAAAA TATTATGACAC ATAT ACGTCATAATA TTTACATTAAAAATC CFF8240_1304 1292868 - 1291300 - | multicopper oxidase family protein TERM 1136 1291705 - 1291727 + g 83 -7.8 -4.79949 | overlap 1291708 CATTATTTGCATCAT TTTTGAGTGA TTT TCACTCATAA TTATTTTTTTAAAGC TERM 1137 1291708 - 1291724 + g 77 -9.5 -3.28715 | overlap 1291705 TATTTGCATCATTTT TGAGTGA TTT TCACTCA TAATTATTTTTTTAA TERM 1138 1293609 - 1293594 - g 72 -6.2 -4.41137 | TATAAGGATAATAAA CTACTA TACG TAGTAG GTGCGGATTTTACGA CFF8240_1305 1293090 - 1295048 + | methyl-accepting chemotaxis protein TERM 1139 1295055 - 1295085 + T 100 -12.9 -3.33261 | opp_overlap 1295044 1295059 1295082, overlap 1295059 AAATTCTAACCGGGT TAAATTTGAGCTT TTATT AAGCTCAAATTTA TTATAAAACTTAGCC TERM 1140 1295059 - 1295081 + T 88 -9.3 -4.31835 | opp_overlap 1295059, overlap 1295055 TCTAACCGGGTTAAA TTTGAGCTT TTATT AAGCTCAAA TTTATTATAAAACTT TERM 1141 1295081 - 1295059 - T 84 -9.3 -3.55622 | opp_overlap 1295055 1295059 TCTAACCGGGTTAAA TTTGAGCTT TTATT AAGCTCAAA TTTATTATAAAACTT CFF8240_1306 1295179 - 1295054 - | hypothetical protein TERM 1142 1295279 - 1295306 + H 77 -5 -5.25805 | opp_overlap 1295281, overlap 1295281 CACTTCTACACTTAC AATGTTCATTTT TCAC AAAATGGACATA TTTTTTAAATTTATT TERM 1143 1295281 - 1295304 + H 77 -7.6 -4.23298 | opp_overlap 1295281, overlap 1295279 CTTCTACACTTACAA TGTTCATTTT TCAC AAAATGGACA TATTTTTTAAATTTA TERM 1144 1296431 - 1296412 - g 74 -2.2 -5.43487 | overlap 1296413 AAATTATACAAAAAA TTCAAAAT AAAG ATTTTGAC GCATACGGCAGAGTA TERM 1145 1296878 - 1296866 - g 74 -6.3 -4.32649 | AGTTGAAAAAGGAAA TCTAG GAG CTAGA ATAATGCATGAACCG CFF8240_1307 1295892 - 1297682 + | methyl-accepting chemotaxis protein TERM 1146 1297707 - 1297687 - T 85 -9.8 -3.36135 | opp_overlap 1297680 1297690, overlap 1297690 AGAAGTTTTAAGCAA TAAGTGCC TTTTT GGCACTTA TTGAAAATTTATTAT TERM 1147 1297704 - 1297690 - T 71 -7.1 -3.81414 | opp_overlap 1297690 1297680, overlap 1297687 AGTTTTAAGCAATAA GTGCC TTTTT GGCAC TTATTGAAAATTTAT CFF8240_1308 1298197 - 1298066 - | hypothetical protein CFF8240_1309 1298263 - 1298457 + | hypothetical protein TERM 1148 1298845 - 1298827 - T 100 -11 -4.61527 | opp_overlap 1298827 AAAACTGTGGAAAAA CCGCCTAA AAA CTAGGCGG TTTAGGATTAAATTT TERM 1149 1298827 - 1298845 + T 88 -10.3 -3.68265 | opp_overlap 1298827 AAAACTGTGGAAAAA CCGCCTA AAAAC TAGGCGG TTTAGGATTAAATTT fusA 1300934 - 1298859 - | elongation factor G TERM 1150 1299726 - 1299736 + g 71 -3.2 -5.03145 | opp_overlap 1299720, overlap 1299721 GCTGATAACCGGATC TGGG AAA TCCA TTTTTTCAAGAATTA rpsG 1301417 - 1300947 - | 30S ribosomal protein S7 TERM 1151 1301042 - 1301060 + g 74 -5.2 -4.68994 | opp_overlap 1301045, overlap 1301035 1301045 TACTGTTTGCTGCAT CAAGTAGC TCT GCTGCTAG TTTTTCCATCATAGT TERM 1152 1301174 - 1301186 + g 80 -10.5 -2.97588 | overlap 1301170 CTTGATATGTAGCAC CGCCG ACA CGGCG TGATTTAACTTCCAT rpsL 1301867 - 1301484 - | 30S ribosomal protein S12 TERM 1153 1301980 - 1302010 + G 100 -12 -4.81249 | opp_overlap 1301980 ATTTGAAGCAACAAA GCATAGATACAGCA AAA TGTTGCATCTATGC TTTTTAAATTTAAAA TERM 1154 1302010 - 1301980 - g 100 -12 -4.32951 | opp_overlap 1301980 ATTTGAAGCAACAAA GCATAGATACAGCA AAA TGTTGCATCTATGC TTTTTAAATTTAAAA CFF8240_1315 1301951 - 1302067 + | hypothetical protein rpoC 1306574 - 1302048 - | DNA-directed RNA polymerase, beta' subunit TERM 1155 1303618 - 1303634 + g 80 -6.5 -4.67608 | overlap 1303619 ACTTCTATATTTATC TCTCCGT CAA ACGGAGC TTTTATCTTCGGCTC TERM 1156 1303619 - 1303633 + g 81 -10 -3.39842 | overlap 1303618 CTTCTATATTTATCT CTCCGT CAA ACGGAG CTTTTATCTTCGGCT TERM 1157 1303871 - 1303883 + g 71 -7.7 -3.59979 | TGCCCACGGCCTCTC CTGGT TTT ACCAG TTTACCCTCGCCAAG TERM 1158 1304805 - 1304817 + g 76 -4.1 -5.14698 | overlap 1304806 TTTATTCCACATAGA TTCTG GAA CAGAG TTTTCTTTTAAATTT TERM 1159 1305639 - 1305652 + g 74 -5.3 -4.72473 | opp_overlap 1305639 AAACAGAGCATCAAC TGCTT CTTG AAGCA TTCTTTTTTCATTAC rpoB 1310706 - 1306567 - | DNA-directed RNA polymerase subunit beta TERM 1160 1307575 - 1307588 + g 76 -3.9 -5.25805 | TTGAAAATAAGCTTT CATAT CTTC ATATG TTTTTTGAATTTCTT TERM 1161 1310756 - 1310743 - R 71 -4.5 -4.96996 | TTGAAAGAAAATAAA CCACA ATGA CGTGG TATAAGCAATTTTAG TERM 1162 1310795 - 1310766 - R 70 -7.9 -3.44325 | ACGTGGTATAAGCAA TTTTAGGAGCAAG AACT CTTGCTCCTCCAA AAAAAAGTAAATTAT rplL 1311181 - 1310807 - | 50S ribosomal protein L7/L12 rplJ 1311699 - 1311214 - | 50S ribosomal protein L10 rplA 1312509 - 1311805 - | 50S ribosomal protein L1 TERM 1163 1311993 - 1312026 + g 72 -8.3 -3.36518 | overlap 1311998 TGCCAAGTCCAGCAT GTATATTTCCTTGTT TATC AACACGGAAATTTAC TTGTCCGCCTTTTGC rplK 1312994 - 1312569 - | 50S ribosomal protein L11 TERM 1164 1312769 - 1312781 + g 71 -5.5 -4.4648 | TTTTAATAAGATCTG TAGCC GGC GGCTG TTTTGTGATAAAAGT nusG 1313542 - 1313012 - | transcription antitermination protein NusG secE 1313731 - 1313552 - | preprotein translocase subunit SecE rpmG 1314014 - 1313847 - | 50S ribosomal protein L33 TERM 1165 1314054 - 1314037 - R 93 -11.3 -3.83026 | opp_overlap 1314025 1314024 CCCTTTTATATTAAA TGCGAGC CAAA GCTCGCA ATTAAAATTAAGCTA tuf 1315261 - 1314062 - | elongation factor Tu TERM 1166 1315370 - 1315386 + r 75 -9.5 -2.65815 | opp_overlap 1315364 1315382 TTGAACCCACGACCT CTTCCTT ACC AAGGAAG TGCTCTACCTCTGAG TERM 1167 1316032 - 1316008 - R 93 -10.8 -3.74781 | opp_overlap 1316007 AAATTAAATTTTAAA GCAGCCTAAT TGATT ACTAGGCTGC AATTTAGATTAATTT sodC 1316601 - 1316041 - | copper/zinc superoxide dismutase TERM 1168 1316776 - 1316792 + r 71 -8.7 -2.90813 | overlap 1316773 1316778 CCCGATTAAGACTTG CACCCTT AGC AGGGGTG TGGTTTCAGCCGCTC pyrF 1317560 - 1316877 - | orotidine 5'-phosphate decarboxylase TERM 1169 1317059 - 1317072 + g 84 -5.3 -5.4251 | opp_overlap 1317059 TAAGAGTAAGAAAAT TGCTA CTAG TAGCA TTTTTTATATCTAAG nusB 1317955 - 1317560 - | transcription antitermination protein NusB ribH 1318427 - 1317957 - | riboflavin synthase subunit beta CFF8240_1335 1318801 - 1318481 - | multidrug resistance protein YkkD CFF8240_1336 1319127 - 1318801 - | chaperonin kdsA 1319962 - 1319132 - | 2-dehydro-3-deoxyphosphooctonate aldolase CFF8240_1338 1320874 - 1319984 - | integral membrane protein TERM 1170 1322072 - 1322059 - g 71 -5.3 -4.57073 | CACTCGGCGGAAAAA GAGTT CATA AACTC TATCCGCTTATACTT TERM 1171 1322126 - 1322116 - g 73 -4 -5.13473 | ATTACACTCAAAAAA TGAA AAC TTCA AGGCTAAATGAAGTT engA 1321002 - 1322393 + | GTP-binding protein EngA aroK 1322383 - 1322916 + | shikimate kinase TERM 1172 1323157 - 1323187 + G 79 -8.5 -3.77196 | gap 2, opp_overlap 1323164 1323168 AAATCTACATTTTGG GTTCAAAGCGACGTC AAA GACGT-GCT-TGAAC TTTACTGGATACTAA TERM 1173 1323842 - 1323829 - g 74 -2.4 -5.52384 | overlap 1323838 1323841 GCTGGAGCAAAAAAA GCTA ACAACG TAGC GTCCCAGACGATGCA trpS 1322920 - 1323891 + | tryptophanyl-tRNA synthetase serS 1323901 - 1325145 + | seryl-tRNA synthetase TERM 1174 1325686 - 1325652 - g 83 -7.8 -4.68479 | AGAAAACAATGAAAA CACTTCCGTAAGCGCT CTA AACGCTGCCGTAAGTG CACTTGAGATAAATA TERM 1175 1327439 - 1327480 + G 75 -9.7 -2.65448 | gap 1, opp_overlap 1327440 1327454, overlap 1327442 1327454 ACGAAAATATAGGAA ATACAAGCTACAAAAGTGAA TTT TTCACTTTTG-AGCTGGTAA ATTAATTAAATTTGG TERM 1176 1327479 - 1327440 - g 100 -13.2 -4.00589 | gap 1, opp_overlap 1327439 1327442 1327454, overlap 1327454 CGAAAATATAGGAAA TACAAGCTACAAAAGTGAA TTT TTCACTTTTG-AGCTGGTA AATTAATTAAATTTG TERM 1177 1327442 - 1327477 + G 83 -11.4 -2.60988 | gap 1, opp_overlap 1327440 1327454, overlap 1327439 1327454 AAAATATAGGAAATA CAAGCTACAAAAGTGAA TTT TTCACTTTTG-AGCTGG TAAATTAATTAAATT TERM 1178 1327454 - 1327466 + G 71 -6.3 -4.15565 | opp_overlap 1327440 1327454, overlap 1327442 1327439 ATACAAGCTACAAAA GTGAA TTT TTCAC TTTTGAGCTGGTAAA TERM 1179 1327466 - 1327454 - g 76 -6.3 -4.49939 | opp_overlap 1327454 1327442 1327439, overlap 1327440 ATACAAGCTACAAAA GTGAA TTT TTCAC TTTTGAGCTGGTAAA CFF8240_1343 1325155 - 1327485 + | TPR domain-containing protein leuA 1329019 - 1327499 - | 2-isopropylmalate synthase pssA 1329916 - 1329182 - | CDP-diacylglycerol--serine O-phosphatidyltransferse psd 1330538 - 1329921 - | phosphatidylserine decarboxylase TERM 1180 1330152 - 1330167 + g 75 -4.8 -4.9792 | opp_overlap 1330164 GCATATATAAGCTAT TCTATT ATTT AATAGA TTTTTATCTAAGCTA CFF8240_1347 1332472 - 1330541 - | putative cell division protein FtsH-like protein TERM 1181 1331824 - 1331859 + g 80 -7 -4.57073 | gap 1 GAAGAGTTTTACCGG TTCCTGGAGGTCCTACT AAA AGTACG-CCTTTAGGAA TTTTTGCACCAAGTC prmA 1333289 - 1332462 - | ribosomal protein L11 methyltransferase TERM 1182 1333726 - 1333754 + r 80 -9.1 -3.62572 | opp_overlap 1333726 TAACAGAATTAAAAA TTAGACTTAAAAG CTT CTTTTAAATCTAA TTTACCCTCATAATA TERM 1183 1333754 - 1333726 - R 100 -11.3 -4.99056 | opp_overlap 1333726 TAACAGAATTAAAAA TTAGACTTAAAAG CTT CTTTTAAATCTAA TTTACCCTCATAATA hisA 1334429 - 1333719 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisH 1335040 - 1334429 - | imidazole glycerol phosphate synthase subunit HisH CFF8240_1353 1335929 - 1335024 - | general glycosylation pathway protein CFF8240_1354 1337718 - 1335931 - | putative epimerase/dehydratase WbiI CFF8240_1355 1338809 - 1337715 - | perosamine synthetase, putative TERM 1184 1339218 - 1339208 - g 73 -4 -5.04265 | AAAAAAGAGCAAAAA CTTT TAG AAAG CTATGAGAAAATTAT CFF8240_1356 1339049 - 1339573 + | general stress protein 14 TERM 1185 1339888 - 1339860 - T 100 -10.7 -4.81752 | opp_overlap 1339868 AAAAAGATGTAAAAA TATTTAAATTTAA CGA TTAAATTTAAATA TCAAAGGGAATTTAC murD 1341085 - 1339889 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase mraY 1342153 - 1341089 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1186 1342399 - 1342388 - g 76 -4.4 -5.04175 | TGAACTATATAAAAA CAAG CGGA CTTG CCGTTGGACTTCCTG gpmI 1342252 - 1343715 + | phosphoglyceromutase TERM 1187 1344397 - 1344410 + G 70 -2.4 -5.30155 | GAAGCAAAAGAAGTC GCAA ATAGCG TTGC TTTTTTGCTTAGTGA fabG 1343740 - 1344483 + | 3-ketoacyl-(acyl-carrier-protein) reductase acpP 1344544 - 1344777 + | acyl carrier protein TERM 1188 1345757 - 1345735 - g 71 -6.4 -4.11751 | opp_overlap 1345735 1345739, overlap 1345725 1345755 ACTAATGCCTTAAAA GCAATATTTG GCT CAAATATTCC TCCTGTTAGCTCAAC CFF8240_1363 1344799 - 1346013 + | 3-oxoacyl-(acyl carrier protein) synthase II accA 1346013 - 1346945 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha CFF8240_1365 1347379 - 1346981 - | hypothetical protein TERM 1189 1347906 - 1347918 + r 72 -6.3 -4.36914 | opp_overlap 1347905 1347906 ACATTTATCACCAAC TGCTA TAT TAGCA TTTTGTAAAGACAAC TERM 1190 1348121 - 1348133 + r 71 -2.6 -5.46657 | TATCATTGTCAAGGT CGGG AAAAA CTCG TTTTTTCTTGCCATA TERM 1191 1348540 - 1348523 - R 83 -8.5 -4.58395 | opp_overlap 1348514 TCTATCGCTGAAAAA CTTAGCA TCTT TGCTAAG AGTAACTAGCTTTTT TERM 1192 1348645 - 1348659 + r 78 -7.2 -4.59853 | TTCCAAGCGTTGCGG CTTTAG CTG CTAAAG TTTTTCCGGCCTTAC CFF8240_1368 1349038 - 1348715 - | hypothetical protein TERM 1193 1348884 - 1348860 - G 73 -7.2 -3.94933 | overlap 1348858 TTAATCTTAAAAACA TCTTCGCTAT TTGAT ATAGCGACGA AAGAAGTATATATTT prfB 1350193 - 1349084 - | peptide chain release factor 2 TERM 1194 1349983 - 1350009 + g 81 -6 -4.9251 | TTGCACTTTTTACGT TTTTAAATTTGC AAA GCATATTTGAAA TTTTAGTTTTTTCTT panC 1350365 - 1351186 + | pantoate--beta-alanine ligase TERM 1195 1351624 - 1351612 - g 71 -3.3 -5.04597 | ATGCATATATAAAAA TAGCC GAA GGCTG CAATCAAAAATGTAG CFF8240_1371 1351188 - 1352498 + | hypothetical protein CFF8240_1373 1352486 - 1353496 + | tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) CFF8240_1372 1353995 - 1353459 - | hypothetical protein TERM 1196 1353844 - 1353859 + g 75 -4.8 -4.93595 | TTTAAATTTATTATC TTATCA TTGT TGATAA TTTTTGCATTTTTAT CFF8240_1374 1354509 - 1353982 - | hypothetical protein CFF8240_1375 1355507 - 1354506 - | hypothetical protein CFF8240_1376 1356185 - 1355574 - | lipoprotein TERM 1197 1355673 - 1355689 + g 70 -8.1 -3.21924 | opp_overlap 1355673, overlap 1355671 GGTTATTTTGCTAAA TGGTTTT GGT AAAACCA TCTTATCCCAACTGC TERM 1198 1355689 - 1355673 - G 73 -8.1 -3.54424 | opp_overlap 1355673 1355671 GGTTATTTTGCTAAA TGGTTTT GGT AAAACCA TCTTATCCCAACTGC TERM 1199 1355728 - 1355746 + g 75 -9 -3.47928 | overlap 1355727 CAAAATTTACTGGCT TCGTAATT GAG AATTACGA TATTTACATTCATCT miaB 1357473 - 1356169 - | tRNA-I(6)A37 thiotransferase enzyme MiaB CFF8240_1378 1357712 - 1357470 - | hypothetical protein TERM 1200 1358632 - 1358622 - g 71 -3.2 -5.11613 | ATACCAGGTAAAAAA GCAA AAA TCGC ACTATTTTCTACAAC nusA 1357914 - 1359011 + | transcription elongation factor NusA TERM 1201 1359054 - 1359024 - T 78 -7.6 -4.3665 | opp_overlap 1359023 1359029, overlap 1359029 TAATTTAAATACAAA TAAAAGCTGCGTGA TCA CCGTGCAGCTTTTA AATTTAAAAAACTAT TERM 1202 1359029 - 1359049 + T 74 -6.8 -4.35524 | opp_overlap 1359029 1359024, overlap 1359023 TAAATACAAATAAAA GCTGCGTG ATCAC CGTGCAGC TTTTAAATTTAAAAA CFF8240_1380 1359644 - 1359066 - | general glycosylation pathway protein CFF8240_1381 1360258 - 1359653 - | general glycosylation pathway protein CFF8240_1382 1361363 - 1360251 - | galactosyltransferase CFF8240_1383 1363644 - 1361368 - | general glycosylation pathway protein TERM 1203 1362420 - 1362441 + g 74 -2.3 -5.53079 | TAAAAAAAGTTACTG CGTAGAGAG ATAT TTTTCTATG TTTTTTATCTATTTT TERM 1204 1362696 - 1362676 - G 72 -4.8 -4.65895 | opp_overlap 1362693 TCTCTGAGCGAAAAA TCTGAAAT CTATC ATTCCAGA CTCCATAATAGTCTG TERM 1205 1362900 - 1362855 - G 82 -9.6 -3.55265 | gap 1 ACAAAGAGATCATAA CT-TTTGTATTTATCAAATTT GGTTT AAATTTAATAAATACAAATAG AGCCAAAATCAAAAT TERM 1206 1363038 - 1363028 - G 71 -3.2 -5.05153 | AGTCCAAAAAACAAA GTGA TAG CCAC ATTCAAAGAGAAACT CFF8240_1384 1364749 - 1363628 - | glycosyl transferase, group 1 family protein TERM 1207 1364696 - 1364683 - G 71 -6.7 -4.19704 | TAAGCTCAGTCAAAA GGTTG CTTA CAACC CTCTCGGCTCCACCG CFF8240_1385 1365786 - 1364746 - | general glycosylation pathway protein TERM 1208 1364801 - 1364811 + g 84 -5.4 -5.58209 | ATGATATTTTCTATC TCGA ATT TCGA TTTTTTTAAATTTGC CFF8240_1386 1366835 - 1365783 - | general glycosylation pathway protein CFF8240_1387 1368366 - 1366852 - | polysaccharide biosynthesis protein TERM 1209 1367820 - 1367802 - G 71 -5.2 -4.55446 | overlap 1367806 TAATAAATACGAAAA TCGACGCT AAC AGCGCAGA AATCGCGGTGTAATA TERM 1210 1367996 - 1367984 - G 74 -3.5 -5.27938 | AGCCCCAAACAAAAA TTTAT AAA ATAAA ACGCCATAGTAAGCT TERM 1211 1368392 - 1368407 + r 71 -7.6 -3.53012 | TCACTTTATTTTACC GACGAA TAAA TTCGTC TTTAAGGCAAAAGAC CFF8240_1388 1369849 - 1368521 - | UDP-glucose 6-dehydrogenase TERM 1212 1369468 - 1369491 + g 100 -9.6 -4.36914 | overlap 1369471 CTTCGCTTACTTTAT GTGCTGTTCC TACT GGAACAGTGC TTTTATCGACCACGA TERM 1213 1369471 - 1369488 + g 79 -9.9 -3.1733 | overlap 1369468 CGCTTACTTTATGTG CTGTTCC TACT GGAACAG TGCTTTTATCGACCA TERM 1214 1370188 - 1370178 - g 91 -2.6 -6.02919 | opp_overlap 1370178 TTAGAAATAAAAAAA TTAT GTA ATAA ATTTAATAATACTCA CFF8240_1389 1369938 - 1370939 + | glycosyl transferase TERM 1215 1371622 - 1371633 + G 89 -3 -5.80951 | TATATTTCATCACTT CTTA TATA TAAG TTTTTTATTTTAAAT CFF8240_1390 1370944 - 1372461 + | hypothetical protein TERM 1216 1372780 - 1372800 + G 83 -7.5 -4.7497 | opp_overlap 1372771, overlap 1372773 CAACTATTTGCAGGA GCCGCATAT ACT GTAAGCGGC TTTTTAATAAGTAAA CFF8240_1391 1372549 - 1372842 + | GtrA family protein galE 1373835 - 1372843 - | UDP-glucose 4-epimerase CFF8240_1393 1377755 - 1373898 - | restriction and modification enzyme CjeI TERM 1217 1375090 - 1375052 - G 79 -9.8 -3.33261 | opp_overlap 1375051 1375050 1375052 1375059, overlap 1375059 CTCCAAGTTTTACAA GCTTAAATTTAGACCCTT CAA AAGGATTTAAATTTACGC CATTTTTGCTACTTG TERM 1218 1375052 - 1375090 + g 75 -9.8 -2.68033 | opp_overlap 1375052 1375059, overlap 1375051 1375050 1375059 CTCCAAGTTTTACAA GCTTAAATTTAGACCCTT CAA AAGGATTTAAATTTACGC CATTTTTGCTACTTG TERM 1219 1375485 - 1375496 + g 73 -4.4 -4.94992 | opp_overlap 1375485, overlap 1375479 TACTAAGCTAAAAAA GAGA ATTT TCTC TTTTTCTAAATTTAG TERM 1220 1375496 - 1375485 - G 76 -4.4 -5.17576 | opp_overlap 1375485 1375479 TACTAAGCTAAAAAA GAGA ATTT TCTC TTTTTCTAAATTTAG TERM 1221 1376141 - 1376125 - G 73 -3.7 -5.03747 | opp_overlap 1376125 AAAGTCTGCAAAAAA CCTTTTA CAC TATAAGG TGGATTTGCTATAAG TERM 1222 1376673 - 1376694 + g 70 -2.3 -5.32699 | opp_overlap 1376674, overlap 1376674 GTAAAATTTTAGCAT ACGGATAAA TTCG TTTATCTGG TTTTTTAGTGTTTGA TERM 1223 1377517 - 1377527 + g 76 -6.8 -4.56597 | AGCTCTAAATTTGCA GGCT TAT AGCC TTTTTCAAGCAGACG CFF8240_1394 1378076 - 1377834 - | hypothetical protein CFF8240_1395 1378905 - 1378087 - | DNA ligase CFF8240_1396 1379960 - 1378902 - | WbnF CFF8240_1397 1381187 - 1379970 - | VI polysaccharide biosynthesis protein VipA/tviB TERM 1224 1380363 - 1380377 + g 73 -7.1 -3.92373 | GATTTCTGGGTGATA GCCGA TCTCT TCGGC TTTATGCGTAAGATA CFF8240_1398 1382047 - 1381229 - | hypothetical protein TERM 1225 1382278 - 1382263 - g 74 -6.2 -4.53303 | opp_overlap 1382263 1382262 CATCCTGATATAAAA GAAGTT ATAA AACTTC CTTTAAAAGATAAAA TERM 1226 1382313 - 1382296 - g 86 -5.7 -5.63645 | opp_overlap 1382296 1382295 TTAAAAGATAAAAAA TTTGTAA AAAC TTACAAA ATTTTATCTAAATTT rfaC 1382107 - 1383075 + | lipopolysaccharide heptosyltransferase I CFF8240_1400 1383068 - 1383952 + | lipid A biosynthesis lauroyl acyltransferase CFF8240_1401 1383949 - 1384644 + | glycosyltransferase TERM 1227 1384964 - 1384950 - g 70 -7.2 -3.727 | opp_overlap 1384955 CTCATCATAGCTAAA TTTTGC TGT GCAAAA ACAGTCGTATCATAC CFF8240_1403 1384641 - 1385711 + | putative heptosyltransferase III waaq CFF8240_1402 1386460 - 1385690 - | xylanase/chitin deacetylase TERM 1228 1386557 - 1386567 + r 71 -4 -5.00616 | overlap 1386560 TATATCCTTTTTTAT TGAT TTT ATCA TTTTTTCGCAAAAAA TERM 1229 1387071 - 1387058 - R 88 -5.3 -5.58209 | opp_overlap 1387058 TTAAAGTTAAAAAAA TGGTT CAAA AACCA CTATTTATACCCGAA CFF8240_1404 1388686 - 1387580 - | glycosyl transferase, group 1 family protein TERM 1230 1387675 - 1387685 + g 71 -5.4 -4.60255 | GTTCTTTGGATGTTG GCTT TTT AAGC TTTTTCAAACATTCT TERM 1231 1388528 - 1388538 + g 84 -4 -5.60993 | ACCCATTTTATCGAT TATC TGC GATA TTTTTTTATCACCAA TERM 1232 1390304 - 1390322 + r 80 -6.2 -4.91573 | overlap 1390318 CAACCCTAACTCTTT TTTTAAAT TCA ATTTAAAA TTTTTAGTATATTTT CFF8240_1407 1391724 - 1390804 - | glycosyl transferase family protein TERM 1233 1391223 - 1391209 - GR 70 -2.2 -5.28683 | ACTAATATGAAAAAA TACAAA ATC TTTATA TTGCTCACTCATACT CFF8240_1408 1393003 - 1391696 - | hypothetical protein TERM 1234 1392256 - 1392245 - GH 74 -5.8 -4.62069 | AAAAATAGCAGAAAA GCAG ATGG CTGC AAAAACTACTATGTA TERM 1235 1393799 - 1393810 + G 72 -5.8 -4.3898 | opp_overlap 1393799 1393797 ACAGGCAAACAAAGA GTCG TAAA CGAC TTTTATGAAGGTGCT CFF8240_1409 1393091 - 1394122 + | WabG TERM 1236 1394373 - 1394384 + G 74 -3 -5.24449 | TTCAGAAGTCATTTC TACT CAAA AGTA TTTTTTAAATTTATA TERM 1237 1394754 - 1394771 + G 73 -7.7 -3.87641 | TGTTGCAAAACCACC GTTTGCG AGCT CGCAAGC TTTATAGCGGGTCTT TERM 1238 1395013 - 1394990 - g 100 -10.4 -4.77157 | opp_overlap 1394990 1394987 CGAATGCATGAAAAA TCTAACACCA AAAA TGGTGCTAGA TGCTATTTATACGCT rfaF 1394151 - 1395050 + | lipopolysaccharide heptosyltransferase II gmhA 1395576 - 1395016 - | phosphoheptose isomerase CFF8240_1412 1396275 - 1395586 - | aspartate racemase TERM 1239 1395714 - 1395730 + g 70 -4.4 -4.80417 | TGACGCTATCTACAC CGAGTT TTTTT GACTCG TTTATTATTTTTATA CFF8240_1413 1397657 - 1396281 - | bifunctional protein HldE TERM 1240 1397065 - 1397081 + g 83 -6.5 -4.88687 | opp_overlap 1397065 1397064, overlap 1397066 TCATTTATCCCAAAT CCTAGCG CCT CGCTAGC TTCTTTTTTATTTGG TERM 1241 1397066 - 1397080 + g 81 -10 -3.50772 | opp_overlap 1397065 1397064, overlap 1397065 CATTTATCCCAAATC CTAGCG CCT CGCTAG CTTCTTTTTTATTTG TERM 1242 1397373 - 1397384 + g 70 -2.2 -5.34309 | GCGACTTTTTTGGCT GGAT TTTC GTCC TTTTTCTTTGATGAT rfaD 1398618 - 1397650 - | ADP-L-glycero-D-manno-heptose-6-epimerase CFF8240_1415 1399121 - 1398615 - | D,D-heptose 1,7-bisphosphate phosphatase CFF8240_1416 1399252 - 1399566 + | cytochrome c553 TERM 1243 1399574 - 1399592 + T 100 -11.8 -4.74598 | opp_overlap 1399564 1399574 TAAAATAATTCAAAA TAGCAGGA TAA TCCTGCTA TTTCTTTTAAATTTA TERM 1244 1399592 - 1399574 - T 100 -11.8 -4.41817 | opp_overlap 1399574, overlap 1399564 TAAAATAATTCAAAA TAGCAGGA TAA TCCTGCTA TTTCTTTTAAATTTA CFF8240_1417 1403155 - 1399628 - | serine protease TERM 1245 1401116 - 1401134 + g 73 -8.2 -3.61398 | opp_overlap 1401116 1401115 ATCTTCATCTAAAAC CGCTATGA AAT TTATAGCG TTATTACCGACAACC TERM 1246 1401979 - 1401998 + g 73 -8 -3.56226 | overlap 1401973 1401970 1401977 CATAACCAGCATTCA TCAAATCA ATGT TGATTTGA TCTTTATCGATACTT CFF8240_1418 1403383 - 1403697 + | cytochrome c553 TERM 1247 1403706 - 1403730 + T 100 -7.8 -5.72622 | opp_overlap 1403708, overlap 1403709 AAAATAAGTCTTAAT CAGGCGGACG ATAGC CGTCCGCTTC TTTTTTCTTTATCAG TERM 1248 1403728 - 1403708 - T 73 -8.9 -2.74286 | opp_overlap 1403706 1403709 AATAAGTCTTAATCA GGCGGACGA TAG CCGTCCGCT TCTTTTTTCTTTATC TERM 1249 1403709 - 1403727 + T 100 -11.7 -4.9072 | opp_overlap 1403708, overlap 1403706 ATAAGTCTTAATCAG GCGGACG ATAGC CGTCCGC TTCTTTTTTCTTTAT CFF8240_1419 1403931 - 1403701 - | hypothetical protein TERM 1250 1403885 - 1403874 - G 77 -5.8 -4.788 | overlap 1403881 AAAGCAATCCAAAAA GAGC AAGC GCTC CAAGCAAAGTAGAAA CFF8240_1420 1406303 - 1403934 - | copper-translocating P-type ATPase TERM 1251 1406885 - 1406902 + H 75 -7 -4.22652 | opp_overlap 1406885 CTAGATAAAAGCGAA GCGGTA GTATGA TACCGC TTTTGAATGATATAA TERM 1252 1406971 - 1406953 - H 71 -3.9 -5.06103 | gap 1, opp_overlap 1406965, overlap 1406965 ATAAGTCGTAAAAAA CTAG-GCT TGAA AGCACTAG TATAAAAGTGCTTAC rho 1407341 - 1408675 + | transcription termination factor Rho TERM 1253 1409811 - 1409774 - g 89 -8.6 -4.34402 | gap 1, opp_overlap 1409786, overlap 1409758 1409786 GTTTTGACACCAAAA CCAGCC-CAAAAATCTC CTTAT GAGATGTTTGTAGCTGG GATTTATGATAGAGA CFF8240_1423 1408685 - 1410274 + | DNA polymerase III subunits gamma and tau CFF8240_1422 1411053 - 1410271 - | hypothetical protein CFF8240_1424 1411460 - 1411050 - | hypothetical protein CFF8240_1425 1411565 - 1411816 + | XRE family transcriptional regulator TERM 1254 1411860 - 1411822 - T 86 -10.6 -3.18268 | opp_overlap 1411821 1411824, overlap 1411820 1411819 1411824 1411832 TTTTAAGTAAAAGCA GATAGTCAAATTTAAGCA ATT TACTCAAATTTGACTATA AATTTAGCTATGAAT TERM 1255 1411858 - 1411824 - T 100 -13.2 -3.14708 | opp_overlap 1411821 1411824, overlap 1411822 1411820 1411819 1411832 TTAAGTAAAAGCAGA TAGTCAAATTTAAGCA ATT TACTCAAATTTGACTA TAAATTTAGCTATGA TERM 1256 1411824 - 1411858 + T 70 -8.8 -2.67244 | opp_overlap 1411824 1411822 1411820 1411819 1411832, overlap 1411821 TTAAGTAAAAGCAGA TAGTCAAATTTAAGCA ATT TACTCAAATTTGACTA TAAATTTAGCTATGA CFF8240_1426 1412705 - 1411881 - | enoyl-(acyl carrier protein) reductase tpiA 1413391 - 1412723 - | triosephosphate isomerase pgk 1414711 - 1413506 - | phosphoglycerate kinase gap 1415705 - 1414713 - | glyceraldehyde-3-phosphate dehydrogenase, type I nadD 1415765 - 1416310 + | nicotinate (nicotinamide) nucleotide adenylyltransferase CFF8240_1431 1416300 - 1416617 + | putative iojap-like protein TERM 1257 1416646 - 1416615 - T 91 -6.8 -5.54264 | gap 1, overlap 1416621 AAAGAGTTAAAAAAA TAGA-AATTTGGGTA AAA TACCCAAATCATCCA AAGAATTTCGATAAA TERM 1258 1416639 - 1416621 - T 100 -10.4 -4.72373 | overlap 1416615 TTAAAAAAATAGAAA TTTGGGTA AAA TACCCAAA TCATCCAAAGAATTT CFF8240_1432 1417668 - 1416640 - | hypothetical protein CFF8240_1434 1417768 - 1418649 + | LysR family transcriptional regulator argS 1420216 - 1418621 - | arginyl-tRNA synthetase TERM 1259 1419437 - 1419449 + g 89 -7.7 -5.38249 | TTCATACATCTGTCC GCTTG AGG CAAGC TTTTTTATCGTTCCT CFF8240_1435 1420431 - 1420216 - | hypothetical protein gmk 1421086 - 1420475 - | guanylate kinase TERM 1260 1420507 - 1420517 + g 86 -2.6 -5.93252 | TGTCTATCACGGCGT TTAT ATC ATAA TTTTTTGTTTTTACG CFF8240_1437 1422756 - 1421083 - | hypothetical protein fliR 1423593 - 1422820 - | flagellar biosynthesis protein FliR TERM 1261 1423246 - 1423234 - G 72 -9.1 -2.57026 | overlap 1423233 GAGAGGCATATTAAC TCCGC TTT GCGGA TCGATCACGCTTGCC CFF8240_1439 1423778 - 1425844 + | TonB-dependent receptor protein CFF8240_1440 1426525 - 1425881 - | ABC transporter, ATP-binding protein tsf 1427592 - 1426528 - | elongation factor Ts rpsB 1428368 - 1427592 - | 30S ribosomal protein S2 CFF8240_1443 1428742 - 1428521 - | hypothetical protein CFF8240_1444 1429428 - 1428739 - | hypothetical protein TERM 1262 1429078 - 1429090 + g 85 -6.3 -5.33866 | overlap 1429071 GGCTCTACCTGCGTG GATAG CAG CTATC TTTTTTGTGAATTTA ribE 1430035 - 1429412 - | riboflavin synthase subunit alpha gidA 1430138 - 1432003 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA CFF8240_1447 1432143 - 1432024 - | hypothetical protein TERM 1263 1432315 - 1432304 - H 77 -3 -5.64421 | ATGCTAAATAAAAAA CTTA AATT TAAG CTCTCCACTTACTCA petA 1432388 - 1432894 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit CFF8240_1449 1432905 - 1434152 + | ubiquinol--cytochrome c reductase, cytochrome b subunit CFF8240_1450 1434149 - 1435174 + | ubiquinol--cytochrome c reductase, cytochrome c1 subunit TERM 1264 1435174 - 1435204 + T 78 -9.8 -2.51888 | opp_overlap 1435175 1435178, overlap 1435178 GTCTAAACTCCATTA AGAATTTTGCCCCT AAA AAGGGCAAAATTCA CTCTTAAATTTAACA TERM 1265 1435203 - 1435175 - T 100 -15.5 -3.2048 | opp_overlap 1435174 1435178, overlap 1435178 TCTAAACTCCATTAA GAATTTTGCCCCT AAA AAGGGCAAAATTC ACTCTTAAATTTAAC TERM 1266 1435178 - 1435200 + T 78 -9.2 -3.20637 | opp_overlap 1435175 1435178, overlap 1435174 AAACTCCATTAAGAA TTTTGCCCCT AAA AAGGGCAAAA TTCACTCTTAAATTT TERM 1267 1435200 - 1435178 - T 93 -11.4 -3.73936 | opp_overlap 1435178 1435174, overlap 1435175 AAACTCCATTAAGAA TTTTGCCCCT AAA AAGGGCAAAA TTCACTCTTAAATTT CFF8240_1451 1435973 - 1435266 - | hypothetical protein TERM 1268 1435973 - 1435989 + r 84 -6.7 -5.1101 | opp_overlap 1435973 TTTTTAACACAATCA TCATAAA TCC TTTATGA TTTTTTACATAGTAG TERM 1269 1436682 - 1436698 + r 70 -5.3 -4.49937 | opp_overlap 1436689, overlap 1436679 TTAATTTTATGTGTG TAATTTA TAC TAAATTA TTTTAATATTATTAG TERM 1270 1436933 - 1436900 - R 100 -9.9 -4.82855 | overlap 1436892 TAGTAAACTTAAAAA TTATATTTTTGAGTC AAAT GAGTCAAAAATATAA AATAACATAAATTTA CFF8240_1455 1437930 - 1437004 - | radical SAM domain-containing protein TERM 1271 1437510 - 1437500 - G 71 -6.8 -4.13014 | TCGATACGGCGAAAA GTGC GCT GCAC GGCACTATCAAGACT TERM 1272 1437590 - 1437606 + g 77 -5.9 -4.75356 | opp_overlap 1437579, overlap 1437592 AAAACAGCGGTTCCG TTGCTTA AAA TAAGCGA TTTTTGAGTATATTT hemE 1438958 - 1437927 - | uroporphyrinogen decarboxylase CFF8240_1457 1439488 - 1438979 - | hypothetical protein TERM 1273 1439453 - 1439439 - G 71 -7.8 -3.6581 | overlap 1439437 ATGACGGGCAAAATA GTCACG TAA CGCGAC TTCCAAAGCATCATT TERM 1274 1439554 - 1439530 - R 71 -7.4 -3.7456 | opp_overlap 1439530 ATAATTATATGGAAA TAGATTAAAT ATTAA ATTTAATCTA TTTTTTAGCTAATGG TERM 1275 1439530 - 1439554 + r 86 -7.4 -5.1101 | opp_overlap 1439530 ATAATTATATGGAAA TAGATTAAAT ATTAA ATTTAATCTA TTTTTTAGCTAATGG asd 1440597 - 1439563 - | aspartate-semialdehyde dehydrogenase TERM 1276 1439778 - 1439788 + g 79 -5.4 -5.03747 | CATCTTGAATTACTA TGCT AGG AGCA TTTTTTAGAACATTT CFF8240_1459 1441804 - 1440662 - | acetoacetate metabolism regulatory protein AtoC CFF8240_1460 1442159 - 1441809 - | hypothetical protein TERM 1277 1441874 - 1441888 + g 74 -5.6 -4.81249 | TAAACCGCACTGGCA CAAGCG TAA CGCTAG TTTTTAAGTTTGCAC CFF8240_1461 1442659 - 1442174 - | putative lipoprotein gyrA 1445289 - 1442701 - | DNA gyrase subunit A TERM 1278 1443757 - 1443772 + g 74 -6.2 -4.6038 | overlap 1443750 ATATCCGCGGTGAGT TATGGT AACT ACCATA TTTTCATTTGGTATC TERM 1279 1445325 - 1445305 - R 100 -11.3 -4.59773 | opp_overlap 1445303 TTTTATCCTTAAAAA TAGCTACAA CGA TTGTAGCTA AAATTTGATAAAAAC CFF8240_1463 1446186 - 1445404 - | hypothetical protein CFF8240_1464 1446407 - 1446183 - | putative acyl carrier protein CFF8240_1465 1447141 - 1446545 - | Cj81-29 CFF8240_1466 1448753 - 1447269 - | amino acid adenylation domain-containing protein TERM 1280 1447641 - 1447659 + g 84 -6.8 -5.18866 | overlap 1447631 ATGTAGAGGATTTTG GATAAAAG CTT CTTTTGTC TTTTGTTTATTTGCA TERM 1281 1448554 - 1448525 - G 71 -8.7 -3.09787 | overlap 1448524 GTAAAGTATAGAAAT TCCCGCTTTTTGC CACT GCAAAAAACGAAA CCAAAGTCCAAATAC TERM 1282 1449028 - 1449043 + r 70 -3.2 -5.32944 | opp_overlap 1449028, overlap 1449021 1449020 TTTTAGCATAAAGAA GGCCTT CCTC AAGCCC TTTTTTAGTTATAAG CFF8240_1469 1450604 - 1450035 - | transformation system protein CFF8240_1470 1451152 - 1450604 - | hypothetical protein CFF8240_1471 1451833 - 1451162 - | outer membrane liproprotein MapA CFF8240_1472 1452045 - 1451830 - | hypothetical protein lepA 1453866 - 1452076 - | GTP-binding protein LepA TERM 1283 1452119 - 1452103 - G 77 -5.8 -4.80396 | opp_overlap 1452103 TAAAACACTTAAAAA CGCCTC TTGCG GAAGCG TTACCTTACCTATGG TERM 1284 1453601 - 1453577 - G 78 -7.1 -4.36596 | opp_overlap 1453577 TCTACAACCAACAAA GCTCCCTCGCA GCT TGCTAAAGAGC GTGAAACTTCATAGC CFF8240_1474 1455007 - 1454078 - | ribose-phosphate pyrophosphokinase TERM 1285 1454827 - 1454800 - G 85 -9.2 -3.97511 | CAGTTAATATAAGAA GCTCCATCAAAT TTAT ATTTGCCGGAGC ACAAGTCGGCTGGAT TERM 1286 1455050 - 1455076 + H 80 -5.2 -5.27923 | overlap 1455053 CAATTTTAACTTATT GTTGCTTAAATT TAG AAATTAAGCTAC TTTTTTGTAAAATTG pyrB 1455119 - 1456051 + | aspartate carbamoyltransferase CFF8240_1476 1456055 - 1457335 + | dihydroorotase CFF8240_1477 1457941 - 1457450 - | hypothetical protein TERM 1287 1458108 - 1458072 - H 100 -17.6 -2.62184 | gap 1 CCGTCTGTTATAGGA GCGTTCGCAGTGACAAA AAAA TTTGTCACTGCGAA-GC ATAAACATTAGAACT CFF8240_1478 1458389 - 1458880 + | hypothetical protein TERM 1288 1458933 - 1458958 + F 70 -4.7 -4.72272 | opp_overlap 1458935, overlap 1458934 1458935 AAATTTGTAAAGCAG AATGCGGTAAT TTAC ATTACCGCAAA TTTTTACTAAACCAA TERM 1289 1458934 - 1458957 + F 73 -8.2 -3.43042 | opp_overlap 1458935, overlap 1458933 1458935 AATTTGTAAAGCAGA ATGCGGTAAT TTAC ATTACCGCAA ATTTTTACTAAACCA TERM 1290 1458935 - 1458956 + F 93 -11.7 -2.65504 | opp_overlap 1458935, overlap 1458934 1458933 ATTTGTAAAGCAGAA TGCGGTAAT TTAC ATTACCGCA AATTTTTACTAAACC TERM 1291 1458956 - 1458935 - f 95 -11.7 -3.60419 | opp_overlap 1458935 1458934 1458933 ATTTGTAAAGCAGAA TGCGGTAAT TTAC ATTACCGCA AATTTTTACTAAACC CFF8240_1479 1459077 - 1459553 + | hypothetical protein CFF8240_1480 1459576 - 1459824 + | transformation system protein CFF8240_1481 1459817 - 1460113 + | hypothetical protein TERM 1292 1460231 - 1460204 - T 75 -7.1 -4.15249 | opp_overlap 1460204 1460208, overlap 1460208 AAACATTAAATTAAA TAAACGCTCTT TATACT AAGGGCGTTTA TTATAAAATTATTAG TERM 1293 1460204 - 1460231 + T 82 -9.3 -3.39749 | opp_overlap 1460204 1460208, overlap 1460208 AAACATTAAATTAAA TAAACGCTCTT TATACT AAGGGCGTTTA TTATAAAATTATTAG TERM 1294 1460208 - 1460227 + T 70 -5.7 -4.33248 | opp_overlap 1460208 1460204, overlap 1460204 ATTAAATTAAATAAA CGCTCTT TATACT AAGGGCG TTTATTATAAAATTA trmU 1461270 - 1460254 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1295 1461115 - 1461092 - G 71 -7.6 -3.69618 | overlap 1461090 TCTAAGTCTAAAATA TGAGTTTCTA TGCC TAAAAACTCA CCTACTTTCTTAACT CFF8240_1483 1461543 - 1462496 + | formate dehydrogenase, cytochrome B subunit CFF8240_1484 1463069 - 1462557 - | hypothetical protein CFF8240_1485 1463653 - 1463126 - | hypothetical protein gltD 1465113 - 1463755 - | glutamate synthase, small subunit gltB 1469512 - 1465115 - | glutamate synthase, large subunit ribD 1470661 - 1469651 - | riboflavin biosynthesis protein RibD CFF8240_1489 1470924 - 1470718 - | hypothetical protein CFF8240_1490 1471222 - 1471347 + | hypothetical protein TERM 1296 1471360 - 1471336 - T 75 -5.7 -4.63184 | opp_overlap 1471335, overlap 1471337 AATTCATGGCAAAAA GTTGAGTGGTA AAC TACCACTCCAT ATAGGTTTTAGCCTT TERM 1297 1471359 - 1471337 - T 79 -9.2 -3.37188 | opp_overlap 1471335, overlap 1471336 ATTCATGGCAAAAAG TTGAGTGGTA AAC TACCACTCCA TATAGGTTTTAGCCT CFF8240_1491 1471771 - 1471349 - | hypothetical protein rbfA 1472136 - 1471768 - | ribosome-binding factor A infB 1474649 - 1472133 - | translation initiation factor IF-2 TERM 1298 1473067 - 1473077 + g 76 -6.8 -4.62336 | ATAGCAGTTGCTACT GGTC CGC GACC TTTTTGAAGTGAACT CFF8240_1494 1474851 - 1474636 - | hypothetical protein TERM 1299 1474841 - 1474828 - G 71 -3.1 -5.03314 | CTCATTTTGAAAAAA TCTGC CTTT GCAAA CCACGCACATTCTTA thrB 1475784 - 1474903 - | homoserine kinase TERM 1300 1475080 - 1475046 - G 73 -7.2 -3.96327 | opp_overlap 1475065 ATCCGCTACCAGAAA GATTGCTCATCAAAGC ACC GCTTAAATAAGCTATC TCTCTTACCCTAAAA TERM 1301 1475230 - 1475240 + g 70 -4 -4.86773 | GCTGATTACATCGGC CATA GGG TATG TTTTTGGTAGTTTTC CFF8240_1496 1476197 - 1475793 - | hypothetical protein lpxC 1477120 - 1476236 - | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase CFF8240_1498 1478095 - 1477193 - | hypothetical protein CFF8240_1499 1479520 - 1478150 - | peptidase M23B TERM 1302 1478962 - 1478946 - G 73 -7.3 -4.04071 | opp_overlap 1478944 AAAGATGAATAATAA CCGTCTT TGT AAAACGG TGTGACTTTAAATTT CFF8240_1500 1480411 - 1479581 - | prephenate dehydrogenase TERM 1303 1480901 - 1480890 - g 82 -4.4 -5.43621 | ACAAATGATAAAAAA GCTA TAGA TAGC ATACTTAGTGTAAAA CFF8240_1501 1480584 - 1482857 + | OMP85 family outer membrane protein CFF8240_1502 1483550 - 1482885 - | mosc domain-containing protein sppA 1484414 - 1483551 - | signal peptide peptidase SppA, 36K type TERM 1304 1483746 - 1483724 - G 76 -9.8 -2.78547 | overlap 1483721 TTACGTCATCAATTA GCCCGACGCT TTT AGCATCGGGA GCTAAAAATACTCTG CFF8240_1504 1485622 - 1484402 - | chlorohydrolase aroQ 1485711 - 1486190 + | 3-dehydroquinate dehydratase CFF8240_1506 1486183 - 1487205 + | Xaa-Pro peptidase folK 1487209 - 1487700 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase flhF 1487700 - 1489007 + | flagellar biosynthesis regulator FlhF CFF8240_1509 1488991 - 1489854 + | ParaA family ATPase CFF8240_1510 1489868 - 1490218 + | hypothetical protein fliA 1490190 - 1490894 + | flagellar biosynthesis sigma factor TERM 1305 1491087 - 1491114 + G 81 -10.8 -2.78935 | opp_overlap 1491086 1491083 1491108 TTCACGATAAGTTAG CTAGAAATTTGG CTTC TCAAATTTCTAG TATAATGAGAAGTAT fliM 1490894 - 1491985 + | flagellar motor switch protein FliM CFF8240_1513 1491978 - 1492808 + | flagellar motor switch protein FliY CFF8240_1514 1493633 - 1492881 - | PP-loop family protein TERM 1306 1492995 - 1493017 + g 89 -9.2 -4.14243 | TGCTAAAAGCTGTTT TGTTTCATGC CTT GCATGAGGCA TTTTCACGTCAAATC mtnN 1494316 - 1493630 - | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase TERM 1307 1493909 - 1493923 + g 86 -5 -5.62219 | overlap 1493914 AACAAGATTTACGCC GTTGTT AGC AGCAAC TTTTTTTGCTATATT fabD 1495230 - 1494313 - | malonyl CoA-acyl carrier protein transacylase TERM 1308 1494490 - 1494518 + g 81 -7.6 -4.33274 | gap 1 AACAGGTTTTACTAG CTGAAGTTTTAGG AGCT CC-AAAGCTTCAG TTTTACTAGTATAAA TERM 1309 1494958 - 1494946 - G 71 -5.5 -4.55023 | overlap 1494947 GCTAATAGCAGAAAA CTCAC CCA GCGAG TGACCGAATGTAAAT CFF8240_1517 1495811 - 1495239 - | fkbp-type peptidyl-prolyl cis-trans isomerase slyd TERM 1310 1495848 - 1495861 + r 70 -6.7 -3.89212 | TATTTACGTACCGGT GAAGC TTTT GCTTC TTTACTATCTGGATA CFF8240_1518 1496713 - 1495832 - | TPR repeat-containing protein CFF8240_1519 1497238 - 1496717 - | Omp18 TERM 1311 1496842 - 1496862 + g 78 -6.9 -4.37991 | CACTTACGCCTTGAG CTACTAAAG CAT CTTTAGCAG TTTTAGCTCTTTTTA tolB 1498590 - 1497325 - | translocation protein TolB CFF8240_1521 1499399 - 1498587 - | periplasmic protein, putative TERM 1312 1498867 - 1498889 + g 74 -9.1 -3.10098 | ATAAATTTATTATAT TCTCCGGTC ATACC GGCCGGAGG TGCTTTTGCAGTGAT TERM 1313 1498985 - 1498997 + g 80 -6.3 -4.67641 | TCTTTTTATTGCTTT GAACA GCT TGTTC TTTTGGTTTTGGGGT CFF8240_1522 1499793 - 1499401 - | ExbD\TolR family transport protein TERM 1314 1499613 - 1499627 + g 70 -3.6 -4.87318 | overlap 1499614 TTCTTTGAGCGTCTA TTCTTA CAG TAAGAG TTTTTAAATTTTGGG CFF8240_1523 1500379 - 1499780 - | ExbB\TolQ family transport protein TERM 1315 1500217 - 1500229 + g 85 -4.1 -5.63504 | overlap 1500214 TTAAAATAGACTCAA GAGCA ACT TGTTC TTTTTTTATCCAGTT TERM 1316 1500333 - 1500293 - G 80 -6.9 -4.55759 | opp_overlap 1500293, overlap 1500296 AAAACTAATAACAAA GTATAGCGACAACCAGCTT AAA ACGATGATTGTCACTAAAC TGCTTTTTGATAAAT atpC 1500769 - 1500380 - | F0F1 ATP synthase subunit epsilon atpD 1502184 - 1500787 - | F0F1 ATP synthase subunit beta TERM 1317 1501205 - 1501217 + g 71 -7.7 -3.67775 | opp_overlap 1501215 TTTTCGGCAATGGCG CGGTT AAG AACCG TTGTTGCATCAAGGT atpG 1503089 - 1502202 - | F0F1 ATP synthase subunit gamma TERM 1318 1502974 - 1502987 + g 73 -3.8 -5.12707 | overlap 1502986 ACACGAGAATGACGA GCAG CTTCTT CTGC TTTTTTAAGCTTTGC atpA 1504616 - 1503099 - | F0F1 ATP synthase subunit alpha atpH 1505161 - 1504631 - | F0F1 ATP synthase subunit delta CFF8240_1529 1505679 - 1505161 - | F0F1 ATP synthase subunit B CFF8240_1530 1506111 - 1505689 - | F0F1 ATP synthase subunit B' TERM 1319 1505861 - 1505877 + g 74 -2.2 -5.58209 | GCTTCCTCTTTTGCT CTAGCT AAAGC AGCTTG TTTTTTTGCATTTGC CFF8240_1531 1507030 - 1506185 - | stage 0 sporulation protein J TERM 1320 1506505 - 1506520 + g 82 -7.6 -4.48221 | opp_overlap 1506504 CCTGAGTCAATTTAC CGTCTT CTAT AAGACG TTTTGTGGATTCATC TERM 1321 1506729 - 1506739 + g 71 -5.4 -4.55673 | TGATCTTCTAAATTT GCTA CTA TAGC TTTTATACTATCTTT soj 1507815 - 1507033 - | SpoOJ regulator protein TERM 1322 1507107 - 1507135 + g 93 -11.1 -3.93262 | opp_overlap 1507104 CATAAAGAATTACCG GTTTGCCGAAACT AGG ACTTTCGGCAAGC TTTACATTTCTTGGG CFF8240_1533 1508447 - 1507812 - | biotin--protein ligase fmt 1509342 - 1508428 - | methionyl-tRNA formyltransferase proB 1510103 - 1509339 - | gamma-glutamyl kinase obgE 1511303 - 1510269 - | GTPase ObgE TERM 1323 1511384 - 1511367 - R 75 -7 -4.13711 | opp_overlap 1511367 TTAAAATAGGAGAAA TAGCCC AAAAAA GGGCTA TGAATTAAGCCGCTG rpmA 1511646 - 1511389 - | 50S ribosomal protein L27 TERM 1324 1511617 - 1511631 + g 72 -2.8 -5.37043 | ATCACGGTTATTTTG GGTTGA ACC TTGACC TTTTTTATGTGCCAT rplU 1511965 - 1511657 - | 50S ribosomal protein L21 TERM 1325 1512166 - 1512148 - R 95 -11.8 -3.71991 | opp_overlap 1512142 GATAAAGTGTAAGAA GTCCCATT TAA AATGGGAC TTAAAAATTATAGCT CFF8240_1539 1513208 - 1512174 - | cytochrome c551 peroxidase TERM 1326 1512390 - 1512372 - G 71 -7.4 -3.6581 | opp_overlap 1512372 1512383, overlap 1512370 ACCATTGTGAAAATA TGGAGCAG TTT CTGCTACA TTTCTTAAAGTAGGA TERM 1327 1512372 - 1512390 + g 78 -7.4 -4.1822 | opp_overlap 1512372 1512370, overlap 1512383 ACCATTGTGAAAATA TGGAGCAG TTT CTGCTACA TTTCTTAAAGTAGGA TERM 1328 1512565 - 1512578 + g 71 -5.3 -4.55721 | AGACCAGCTTTTTCA GCTTT TGTT AAAGC TTTTGTATCGCCTTT TERM 1329 1513207 - 1513197 - G 73 -4 -5.10154 | opp_overlap 1513197 ACTTAAAACTAAAAA TGAA CCT TTCA TATGTTCGTCTCCTT CFF8240_1540 1514171 - 1513617 - | formate dehydrogenase iron-sulfur subunit CFF8240_1541 1516558 - 1514186 - | formate dehydrogenase TERM 1330 1515202 - 1515221 + g 72 -5 -4.76123 | TTCCCATAAGAGTGT CTGGATCA AAAT TTATCCAG TTTTCTTGATGCTTT CFF8240_1543 1517357 - 1517154 - | hypothetical protein TERM 1331 1517375 - 1517396 + r 88 -7.5 -4.92812 | opp_overlap 1517378 CAACTCCTTGTATCA TAAGTAAAA TATA TTTTACTTA TTTGTTTTATTCTAC CFF8240_1544 1518164 - 1517487 - | hypothetical protein TERM 1332 1517534 - 1517552 + g 85 -6.8 -5.36441 | TGCTTTTTGGAGTTG CCATTTTA GTT TGAAATGG TTTTTTATGTAAAGA TERM 1333 1517756 - 1517741 - G 89 -9 -4.64657 | opp_overlap 1517741 1517738 TCAAAGTTTCAAAAA GCTCTC TTGA GAGAGC TAAATTATTTTTTAA CFF8240_1545 1519822 - 1518161 - | iron-sulfur cluster-binding domain-containing protein TERM 1334 1519821 - 1519808 - G 77 -5.3 -4.9725 | opp_overlap 1519808 1519806 ATTGTCATATAAAAA TGCAA ACTC TTGCA TAATTTTCCTTGATT selA 1519954 - 1521282 + | selenocysteine synthase selB 1521275 - 1523080 + | selenocysteine-specific translation elongation factor TERM 1335 1523485 - 1523470 - g 72 -2.6 -5.28778 | overlap 1523472 AGCACTTATAAAAAA TCTTGA TAAA TCAAAA ATTATCAATCTAGGA CFF8240_1548 1523126 - 1523866 + | putative periplasmic protein TERM 1336 1523887 - 1523869 - f 71 -7.4 -3.70622 | opp_overlap 1523871, overlap 1523867 1523864 CGATCTAAAATAACA TGGGGCTT ATA AAGCCCTA TCCTAAATTTATGCT TERM 1337 1523871 - 1523885 + F 80 -10 -2.85446 | opp_overlap 1523869 1523867 1523864 ATCTAAAATAACATG GGGCTT ATA AAGCCC TATCCTAAATTTATG TERM 1338 1524443 - 1524432 - g 73 -4.4 -4.94058 | TTAACGCAAATAAAA GATC TCAA GATC TAAAACCAACGTATC CFF8240_1549 1523936 - 1524613 + | acylneuraminate cytidylyltransferase CFF8240_1550 1524636 - 1525379 + | AP endonuclease CFF8240_1551 1525376 - 1525585 + | phosphoribosylglycinamide formyltransferase 2 CFF8240_1552 1525615 - 1525764 + | hypothetical protein CFF8240_1553 1525775 - 1526578 + | phosphoribosylglycinamide synthetase, ATP-grasp, putative CFF8240_1554 1526575 - 1527258 + | hypothetical protein TERM 1339 1527602 - 1527636 + GF 77 -8.6 -3.54129 | opp_overlap 1527601 1527602 1527604, overlap 1527613 TCGGTGGCACCAAAG TAGACGCGATACTCTC TTG GGGAGTTTTGCATCTA TTTACCCCAAATATC CFF8240_1555 1527268 - 1527954 + | hypothetical protein TERM 1340 1528033 - 1528016 - gT 75 -6.9 -4.19879 | overlap 1528007 1528008 ATAAAAGCGGCAAAA GACGCCG GAGC CGACGCC CTAAAAGTGCAAACC TERM 1341 1528170 - 1528156 - gT 83 -10 -3.29361 | overlap 1528154 ATACAAAAAAGCATA CACTCC TTG GGAGTG GCAAAGCGAGCTAAA CFF8240_1556 1527917 - 1528939 + | sialic acid synthase TERM 1342 1528961 - 1528981 + T 100 -12.7 -3.76607 | opp_overlap 1528961 GAAGCCGAGGAAAAA TTTGGCTGA ATA TCAGCCAAA TTTAGATATCTATTA TERM 1343 1528981 - 1528961 - T 100 -12.7 -4.74801 | opp_overlap 1528961 GAAGCCGAGGAAAAA TTTGGCTGA ATA TCAGCCAAA TTTAGATATCTATTA CFF8240_1557 1530358 - 1528994 - | glutamate dehydrogenase TERM 1344 1529639 - 1529656 + g 79 -5.5 -5.1925 | TATAGCAACATTTCC TGCTCCG CTAA CTGAGCA TTTTTTACCTTCTAA CFF8240_1558 1531149 - 1530466 - | hypothetical protein upp 1531786 - 1531157 - | uracil phosphoribosyltransferase TERM 1345 1532158 - 1532135 - R 76 -8.4 -3.65996 | opp_overlap 1532142 1532149, overlap 1532133 1532142 TTGGATATACAAATA TTAAAAATAG CTAC CTATTTTTAA GATAGCTATTATCAA TERM 1346 1532166 - 1532142 - R 72 -5.1 -4.96106 | opp_overlap 1532142 1532149, overlap 1532135 1532133 TACAAATATTAAAAA TAGCTACCT ATTTTTA AGATAGCTA TTATCAAATTTACTT CFF8240_1560 1533431 - 1532184 - | NADP-dependent malic enzyme TERM 1347 1533447 - 1533461 + r 72 -5.8 -4.61566 | CTTCACTTCCTTAAT TTTATC TTT GATAAA TTTTGTAATTTACGG TERM 1348 1533685 - 1533667 - R 100 -6.2 -5.99154 | opp_overlap 1533667 1533666 1533669 GATTAAATAAAAAAA TATAAATA CAA TATTTATA AATTTTCTTTTGAAT CFF8240_1561 1534112 - 1533681 - | transcriptional regulator gltX 1535629 - 1534247 - | glutamyl-tRNA synthetase CFF8240_1563 1535703 - 1536530 + | putative periplasmic protein TERM 1349 1536570 - 1536526 - T 73 -4.5 -5.06735 | opp_overlap 1536530 1536531 1536532 1536536 1536562, overlap 1536532 1536536 1536562 TAGAAATTATAAAAA GATAGATAAATTTGGTATCAA AAT TTGATACCAAATTTAAATTTT AATGCTTAGATAGAT TERM 1350 1536530 - 1536566 + T 88 -9.7 -4.35742 | opp_overlap 1536526 1536532 1536536 1536562, overlap 1536531 1536532 1536536 1536562 AATTATAAAAAGATA GATAAATTTGGTATCAA AAT TTGATACCAAATTTAAA TTTTAATGCTTAGAT TERM 1351 1536531 - 1536565 + T 100 -13.2 -3.20722 | opp_overlap 1536526 1536532 1536536 1536562, overlap 1536530 1536532 1536536 1536562 ATTATAAAAAGATAG ATAAATTTGGTATCAA AAT TTGATACCAAATTTAA ATTTTAATGCTTAGA TERM 1352 1536564 - 1536532 - T 100 -16.7 -3.37205 | opp_overlap 1536531 1536530 1536532 1536536 1536562, overlap 1536526 1536536 1536562 TTATAAAAAGATAGA TAAATTTGGTATCAA AAT TTGATACCAAATTTA AATTTTAATGCTTAG TERM 1353 1536532 - 1536564 + T 100 -16.7 -2.51951 | opp_overlap 1536532 1536526 1536536 1536562, overlap 1536531 1536530 1536536 1536562 TTATAAAAAGATAGA TAAATTTGGTATCAA AAT TTGATACCAAATTTA AATTTTAATGCTTAG TERM 1354 1536560 - 1536536 - T 100 -13.1 -4.28389 | opp_overlap 1536532 1536531 1536530 1536536, overlap 1536532 1536526 AAAAAGATAGATAAA TTTGGTATCAA AAT TTGATACCAAA TTTAAATTTTAATGC TERM 1355 1536536 - 1536560 + T 100 -13.1 -3.94846 | opp_overlap 1536536 1536532 1536526, overlap 1536532 1536531 1536530 AAAAAGATAGATAAA TTTGGTATCAA AAT TTGATACCAAA TTTAAATTTTAATGC accC 1537906 - 1536569 - | biotin carboxylase TERM 1356 1537674 - 1537686 + g 71 -7.7 -3.63068 | opp_overlap 1537674 CCCGGAAATATAGCA TCAGC TTC GCTGA TTTCGCATGCTGTGA accB 1538355 - 1537903 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein dcd 1538651 - 1539211 + | deoxycytidine triphosphate deaminase TERM 1357 1539725 - 1539708 - g 71 -3.3 -5.1361 | opp_overlap 1539719 ATAAATGGTAAAAAA GTCGGCA CATT CGCAGAC GCTAGCGTATTTAGT CFF8240_1567 1539222 - 1540340 + | spore coat polysaccharide biosynthesis protein SpsC TERM 1358 1540391 - 1540360 - T 73 -7.6 -3.83026 | opp_overlap 1540353 1540360 TGCTTCGATATCAAA TTTACTCAAATT TAAATGAT AATTTGAGTAAA TTTAGTCTTTCTTTA TERM 1359 1540360 - 1540391 + T 77 -7.6 -4.10269 | opp_overlap 1540360, overlap 1540353 TGCTTCGATATCAAA TTTACTCAAATT TAAATGAT AATTTGAGTAAA TTTAGTCTTTCTTTA CFF8240_1568 1541666 - 1540404 - | iron-sulfur cluster-binding domain-containing protein CFF8240_1569 1542413 - 1541667 - | pyrroline-5-carboxylate reductase CFF8240_1570 1543234 - 1542410 - | hypothetical protein hemN 1544616 - 1543255 - | coproporphyrinogen III oxidase TERM 1360 1544295 - 1544285 - G 70 -8.2 -3.25166 | overlap 1544282 1544283 GCACTGTAAAAAGTA GGCG TTC CGCC GCCAAAATGCATCTG CFF8240_1572 1545053 - 1544616 - | hypothetical protein argF 1545975 - 1545046 - | ornithine carbamoyltransferase hemB 1546961 - 1545984 - | delta-aminolevulinic acid dehydratase TERM 1361 1546165 - 1546181 + g 77 -5.9 -4.65446 | opp_overlap 1546165 TTATAAACGCAAAGA GGAAGAA GAG TTCTTTC TTTTATATCTCTAAT TERM 1362 1547022 - 1547038 + H 79 -6.7 -4.75404 | AAAAATATATCTATT TCTTTAA AAT TTAAAGA TTTTTGATAAACTTT ribA 1547073 - 1547660 + | GTP cyclohydrolase II TERM 1363 1547779 - 1547800 + G 75 -8.9 -3.51825 | ATGAAACCTCTCGAG TTTTTGGAT TTTA ATCCAAAAA TTGTAATTGACGTAG TERM 1364 1547822 - 1547839 + G 93 -6.9 -5.58209 | overlap 1547824 TTGACGTAGGTAGTG GAGCCGG ATTT CCGGCTA TTTTTTTAAGTTTGA TERM 1365 1547824 - 1547837 + G 93 -9.5 -4.41528 | overlap 1547822 GACGTAGGTAGTGGA GCCGG ATTT CCGGC TATTTTTTTAAGTTT gidB 1547644 - 1548192 + | methyltransferase GidB CFF8240_1577 1548186 - 1548380 + | hypothetical protein CFF8240_1578 1548377 - 1548691 + | hypothetical protein CFF8240_1579 1548688 - 1549557 + | endopeptidase HtpX TERM 1366 1549600 - 1549553 - T 73 -8.8 -3.09202 | overlap 1549558 ACAGATATTTTAATA GTTAAGTTCAAAAATCAAACAA CAAC TCTCTTAATCTTTGAACTTAAC TTAACTAAAATATCA alr 1550580 - 1549567 - | alanine racemase TERM 1367 1549807 - 1549818 + g 71 -3 -5.03314 | TAAATCATACGTTGC GATA TTTA TATC TTTTTTAGCCGTGAA CFF8240_1581 1550833 - 1550573 - | hypothetical protein CFF8240_1582 1551814 - 1550846 - | putative periplasmic protein TERM 1368 1551475 - 1551486 + g 77 -5.8 -4.72333 | opp_overlap 1551475, overlap 1551483 TTGTTATCTCATATA CTCC AACC GGAG TTTTTAGATCTCCTT CFF8240_1583 1551940 - 1552386 + | hypothetical protein TERM 1369 1552420 - 1552406 - f 80 -10 -2.81535 | opp_overlap 1552406, overlap 1552403 CTATTACAAAATTTA GCCCTA ATT TAGGGC TTTTACTTTAAATTA TERM 1370 1552406 - 1552420 + F 93 -10 -4.5852 | opp_overlap 1552406 1552403 CTATTACAAAATTTA GCCCTA ATT TAGGGC TTTTACTTTAAATTA TERM 1371 1553912 - 1553885 - g 88 -7.1 -5.10163 | opp_overlap 1553892 AATTTTAAAACAAAA TCCAAAAGCTA TATATT TAGCTTGTGGA GACGGCGGAAATATC CFF8240_1584 1552455 - 1554677 + | hypothetical protein CFF8240_1585 1554665 - 1555597 + | radical SAM domain-containing protein TERM 1372 1555574 - 1555590 + F 70 -6.7 -3.95219 | CTCGAAAACAGCGAT TTTAAAG GAG CTTTAAA TTTATGAAATTTAGC CFF8240_1586 1555594 - 1556664 + | radical SAM family protein CFF8240_1587 1556673 - 1557431 + | transketolase, N-terminal subunit CFF8240_1588 1557428 - 1558303 + | methyltransferase, FkbM family protein CFF8240_1589 1558305 - 1559171 + | transketolase family protein CFF8240_1590 1559168 - 1559827 + | methyltransferase TERM 1373 1559938 - 1559928 - g 80 -2.6 -5.74122 | TAGTAGATAAAAAAA TATA TGA TATA GCTTGCAAATATTCT CFF8240_1591 1559834 - 1560538 + | caffeoyl-CoA O-methyltransferase CFF8240_1592 1560538 - 1561602 + | radical SAM domain-containing protein TERM 1374 1562622 - 1562609 - g 78 -2.4 -5.73563 | ATCAAATGAAAAAAA CAAG ATCTTG CTTG AATATCTAAAAGATG CFF8240_1593 1561599 - 1562663 + | radical SAM domain-containing protein CFF8240_1594 1562663 - 1563409 + | hypothetical protein CFF8240_1595 1563438 - 1563791 + | hypothetical protein TERM 1375 1563913 - 1563899 - g 73 -4.3 -4.94672 | AAACAACATCAAAAA CCATA ATTCA TATGG CTGCTTGTTCAAATA TERM 1376 1564018 - 1564002 - g 70 -2.4 -5.30616 | opp_overlap 1564002, overlap 1563996 TTACGCAAATAAAAA TAAAAT AGAAA ATTTTA TTTTTTTCTCAGCTG TERM 1377 1564002 - 1564018 + G 78 -2.4 -5.626 | opp_overlap 1563996 1564002 TTACGCAAATAAAAA TAAAAT AGAAA ATTTTA TTTTTTTCTCAGCTG CFF8240_1596 1563781 - 1564062 + | UDP-glucose 4-epimerase, putative TERM 1378 1564923 - 1564907 - g 71 -3.1 -5.11033 | opp_overlap 1564907 CAGAATTCCAAAAAA TAAATTC TAT AAATTTA TTATGAAGAGTGATT CFF8240_1598 1564731 - 1565006 + | hypothetical protein TERM 1379 1565540 - 1565514 - g 95 -12.6 -3.60814 | opp_overlap 1565516 AAAGTGCAGATATAA TATTAGCAAATA ACG TATTTGCTAATA TTCCGGATATCAATT TERM 1380 1565516 - 1565538 + G 83 -10.8 -3.05343 | opp_overlap 1565514 AGTGCAGATATAATA TTAGCAAATA ACG TATTTGCTAA TATTCCGGATATCAA TERM 1381 1565890 - 1565866 - g 70 -8.1 -3.315 | opp_overlap 1565866, overlap 1565865 ATTTTTAGATAAAAG TCTATTTATAA ATT TTACAAATAGA TTAAATAAATTTAAG TERM 1382 1566184 - 1566172 - g 95 -3.5 -6.14618 | overlap 1566179 TATAAAACAAAAAAA TAAAA AAT TTTTA GAAAATGGCGGTACA TERM 1383 1566189 - 1566179 - g 91 -2.6 -6.12458 | overlap 1566172 CAAAAAAATAAAAAA TTTT TAG AAAA TGGCGGTACAATTTA CFF8240_1599 1565000 - 1566250 + | D-mycarose 3-C-methyltransferase TERM 1384 1566810 - 1566800 - g 74 -3.2 -5.24531 | overlap 1566802 1566808 ATCCTCTACAAAAAA TGCC AGA AGCA TCTGATATTGCAGAA CFF8240_1600 1566241 - 1566927 + | ketoreductase, putative CFF8240_1601 1566931 - 1567995 + | heme biosynthesis protein, putative TERM 1385 1568662 - 1568642 - g 76 -4.1 -5.1167 | overlap 1568644 AACTCAATACAAAAA TATCTAAAT TCG ATTTAGAAA ATAAAACTATATGGA TERM 1386 1568660 - 1568644 - g 71 -6.7 -4.17211 | overlap 1568642 CTCAATACAAAAATA TCTAAAT TCG ATTTAGA AAATAAAACTATATG TERM 1387 1568680 - 1568669 - g 71 -3 -5.19275 | ATTTAGAAAATAAAA CTAT ATGG ATAG ACGAGCAAAAGTATA CFF8240_1602 1567996 - 1569105 + | UDP-galactopyranose mutase TERM 1388 1569779 - 1569759 - g 71 -3.3 -5.06089 | overlap 1569750 1569760 1569761 AAAGGACAAAGAAAA GCCTTTGAA GAA TTCAAAGAA CAAATAAGCGGGGGG CFF8240_1603 1569120 - 1569872 + | methyltransferase TERM 1389 1569998 - 1569987 - g 73 -3.6 -5.05782 | ATGTATTTGAAAAAA CCGG TTTT CCAG TTAGAATAAATAATT TERM 1390 1570325 - 1570342 + G 71 -8.5 -3.00476 | opp_overlap 1570323, overlap 1570328 AACTATACTCAAATT GAAGCTT GCGA AAGCTTC TATATGCTTCAAAGT CFF8240_1604 1569884 - 1570513 + | hypothetical protein TERM 1391 1571091 - 1571120 + G 73 -8.2 -3.58533 | opp_overlap 1571091 TCCGTTATTTAAAAA GTATTATAATAA AGAAAA TTATTATAATAC TTTAACAAATTATGA TERM 1392 1571120 - 1571091 - g 86 -8.2 -4.65895 | opp_overlap 1571091 TCCGTTATTTAAAAA GTATTATAATAA AGAAAA TTATTATAATAC TTTAACAAATTATGA CFF8240_1605 1570546 - 1571241 + | hypothetical protein TERM 1393 1571274 - 1571255 - f 74 -2.2 -5.66338 | overlap 1571273 AAAGAGAACAAAAAA TATATGAA ACAT TACATATA CCCAAACGGTAAAGT TERM 1394 1571939 - 1571926 - f 70 -5.3 -4.62984 | opp_overlap 1571924 1571926 TGATTATATACAAAA TCTCT CAAA AGAGA TATTTGGAAGCGAAG CFF8240_1607 1572680 - 1573579 + | putative ADP-heptose--lipopolysaccharide heptosyltransferase II CFF8240_1608 1573793 - 1574800 + | hypothetical protein CFF8240_1609 1574797 - 1575267 + | 3-demethylubiquinone-9 3-methyltransferase TERM 1395 1577206 - 1577193 - g 77 -5.3 -4.89063 | opp_overlap 1577193 TTACGTAAAAATAAA GCTTT ATTT AAAGC ATATCTTTTAAAACA asnB 1575654 - 1577456 + | asparagine synthase (glutamine-hydrolyzing) TERM 1396 1577841 - 1577803 - g 100 -13.3 -4.01411 | opp_overlap 1577813 1577828 1577828, overlap 1577828 1577830 TAGCAAAAACGCAAA TGCGAAGCAAGCTCT TGAGTCAAG AGAGCTTGCTACGCA CAAAACAGACCAAAA TERM 1397 1577828 - 1577884 + G 100 -32.8 -3.53018 | opp_overlap 1577803 1577828 1577830 1577847, overlap 1577813 1577828 1577847 GCTCTTGAGTCAAGA GAGCTTGCTACGCACAAAACAGACCA AAAAC TGATCTGTTTTGTGCGTAGCAAGCTC TCTTTCCTATCTCAA TERM 1398 1577828 - 1577886 + G 100 -20.8 -3.88498 | gap 2, opp_overlap 1577803 1577828 1577830 1577847, overlap 1577813 1577828 1577847 GCTCTTGAGTCAAGA --GAGCTTGCTACGCACAAAACAGACCA AAAAC TGATCTGTTTTGTGCGTAGCAAGCTCTC TTTCCTATCTCAAAG TERM 1399 1577884 - 1577828 - g 100 -35.7 -3.08679 | opp_overlap 1577813 1577828 1577828 1577847, overlap 1577803 1577830 1577847 GCTCTTGAGTCAAGA GAGCTTGCTACGCACAAAACAGACCAA AAA CTGATCTGTTTTGTGCGTAGCAAGCTC TCTTTCCTATCTCAA TERM 1400 1577882 - 1577830 - g 100 -32.5 -3.10344 | opp_overlap 1577813 1577828 1577828 1577847, overlap 1577803 1577828 1577847 TCTTGAGTCAAGAGA GCTTGCTACGCACAAAACAGACCAA AAA CTGATCTGTTTTGTGCGTAGCAAGC TCTCTTTCCTATCTC TERM 1401 1577865 - 1577847 - g 72 -6 -4.42386 | opp_overlap 1577847 1577828 1577828, overlap 1577830 1577828 TTGCTACGCACAAAA CAGACCAA AAA CTGATCTG TTTTGTGCGTAGCAA TERM 1402 1578521 - 1578481 - g 70 -4.3 -4.65819 | AAAATTAAATGAAAA CTCTACTAAATTTAATC CTAATTT AACTAAATTTAGTATAG AAAACTTTGAAAAAA CFF8240_1612 1577453 - 1578559 + | glycosyl transferase, group 1, putative TERM 1403 1578704 - 1578684 - f 76 -4.1 -5.47821 | opp_overlap 1578686, overlap 1578686 ATCTATGCAAAAAAA TATAAAAGA TAA TCTTTTATT AATTTGCAATGGTGA TERM 1404 1578702 - 1578686 - f 74 -6.7 -4.37763 | opp_overlap 1578686, overlap 1578684 CTATGCAAAAAAATA TAAAAGA TAA TCTTTTA TTAATTTGCAATGGT CFF8240_1614 1579802 - 1580011 + | hypothetical protein CFF8240_1615 1580011 - 1580736 + | hypothetical protein TERM 1405 1581125 - 1581109 - g 70 -4.5 -4.81814 | ATTATGACAACAAAA TTCATCT TTT AGATAAA AATTTCTATATAAAA CFF8240_1616 1580733 - 1581809 + | glycosyl transferase, group 1 TERM 1406 1582498 - 1582471 - g 100 -9.4 -4.7629 | opp_overlap 1582475, overlap 1582475 TGATGAAGCTAAAAA TAAAGTTTTAAG TTTA CTTAAAACTTCA CTTGAAATTCGACTT TERM 1407 1582475 - 1582494 + G 70 -8 -3.19246 | opp_overlap 1582475 1582471 GAAGCTAAAAATAAA GTTTTAAG TTTA CTTAAAAC TTCACTTGAAATTCG TERM 1408 1582494 - 1582475 - g 90 -8 -4.91473 | opp_overlap 1582475, overlap 1582471 GAAGCTAAAAATAAA GTTTTAAG TTTA CTTAAAAC TTCACTTGAAATTCG TERM 1409 1582931 - 1582918 - g 74 -2.4 -5.52384 | opp_overlap 1582918 GTTTTACCAAAAAAA TCTC AACAAA GAGA GTTATCCGCTTATCA asnB 1581797 - 1583548 + | asparagine synthase (glutamine-hydrolyzing) CFF8240_1618 1583545 - 1584615 + | hypothetical protein CFF8240_1619 1584602 - 1585255 + | hypothetical protein TERM 1410 1586199 - 1586189 - g 74 -5.4 -4.83169 | AGCCTCTCATAAAAA GTCT ATT AGAC AACAACGAAACTATA CFF8240_1620 1585246 - 1586634 + | hypothetical protein TERM 1411 1587512 - 1587483 - g 72 -5.1 -4.75063 | overlap 1587474 1587485 ATAAAATTCTAAAAA CTGCTTTTAAAAA TCGA TGTTTAAAAGCCG GATATCCTATGTTTG CFF8240_1621 1586627 - 1588072 + | hypothetical protein TERM 1412 1588965 - 1588912 - g 73 -3.9 -5.18357 | gap 1, opp_overlap 1588945, overlap 1588946 GAAGCGATTAAAAAA CAGACGCCAGACACTATT-CTTCTTG CAA CTAGAAGCAAAAGAGTTTTGCATCTG ATAAAACCAGTTGCT CFF8240_1622 1588069 - 1589466 + | hypothetical protein CFF8240_1623 1589477 - 1589626 + | hypothetical protein CFF8240_1624 1589623 - 1591041 + | hypothetical protein CFF8240_1625 1591130 - 1591297 + | hypothetical protein TERM 1413 1591392 - 1591356 - gf 100 -7.5 -5.60993 | overlap 1591358 GCCGTTAGAAAAAAA CTCATTTCAAATTTAGA AAA TCTAAATATAAAATGGG CTGACGGATTTGAGT TERM 1414 1591390 - 1591358 - gf 73 -8.7 -2.96801 | overlap 1591356 CGTTAGAAAAAAACT CATTTCAAATTTAGA AAA TCTAAATATAAAATG GGCTGACGGATTTGA CFF8240_1626 1591272 - 1592492 + | hypothetical protein CFF8240_1627 1592519 - 1593031 + | adenylylsulfate kinase CFF8240_1629 1593940 - 1594716 + | hypothetical protein TERM 1415 1594807 - 1594777 - g 78 -7 -4.27686 | opp_overlap 1594777 TAAAATCAGCTAAAA TACTTCCGCTTATA ATA TACAAGAAGAAGTA TATAATGTCAAATTT TERM 1416 1595932 - 1595919 - g 76 -6.7 -4.58236 | GACAAAAGAGTAAAA GAGCT TAAA AGCTC AAATTTAGCAAGTAT TERM 1417 1596104 - 1596089 - g 93 -7.6 -5.47399 | GCAATGTGAAAAAAA CGAGTT CTTG AACTCG CTTAGCACGGTAAGC CFF8240_1630 1594713 - 1596977 + | hypothetical protein CFF8240_1631 1596974 - 1597558 + | glutamine amidotransferase class-I CFF8240_1632 1597555 - 1598298 + | sugar metabolism cluster protein CFF8240_1633 1598339 - 1599334 + | FlmA CFF8240_1634 1599369 - 1599818 + | acetyltransferase TERM 1418 1599849 - 1599829 - T 100 -12.7 -4.56729 | ATTAAAATACCAAAA TATCCCCAT AAA ATGGGGATA AAAGGACTTTAGAAA CFF8240_1635 1601574 - 1600015 - | flagellin B TERM 1419 1601715 - 1601694 - R 100 -13.1 -3.57629 | overlap 1601706 1601707 GAATAATTGATAGAA TCTAGGGAG AAAC CTCCCTAGA AGAGATAAGCTTAAA CFF8240_1636 1603329 - 1601773 - | flagellin B CFF8240_1637 1605092 - 1603527 - | methyltransferase, putative CFF8240_1638 1607091 - 1605106 - | motility accessory factor TERM 1420 1606855 - 1606867 + g 71 -6.3 -4.12037 | TTCATAAAGATATTT TTTGG TTT CCAAA TTTATGATATTTATA CFF8240_1639 1607856 - 1607182 - | hypothetical protein CFF8240_1640 1608004 - 1609014 + | transport protein TERM 1421 1609243 - 1609266 + G 78 -2.4 -5.67529 | overlap 1609245 ATACAAGCAGGCGGT TTTGGCTATA TGAG TTTAGCCGGA TTTTTATTTTTACTT TERM 1422 1610314 - 1610304 - g 72 -2.6 -5.2197 | TAGAAAAAGTAAAAA TAAT AGT ATTA AATATCCAGAAGAAG CFF8240_1641 1609015 - 1610343 + | cation transport protein, putative TERM 1423 1610582 - 1610567 - g 72 -2.6 -5.2422 | overlap 1610569 AAGTATAGGAAAAAA CATAGA AGCT TCTATA CTAAGCGTTATGGCT CFF8240_1642 1610340 - 1610990 + | hypothetical protein TERM 1424 1611630 - 1611612 - g 76 -3.9 -5.37043 | gap 1 ATGGGACACAAAAAA GGCGAGTA TCAA TACT-GCC ATCCAAACGATCACG aspA 1611243 - 1612667 + | aspartate ammonia-lyase TERM 1425 1612713 - 1612734 + F 79 -9.5 -3.19995 | opp_overlap 1612712 1612716, overlap 1612712 1612714 CTAAAAGTATTGAAT TTACCTTGC TTTT GCAAGGTAG TAATTTTGGTATTTG TERM 1426 1612714 - 1612733 + F 84 -10.8 -2.50913 | opp_overlap 1612712 1612716, overlap 1612713 1612712 TAAAAGTATTGAATT TACCTTGC TTTT GCAAGGTA GTAATTTTGGTATTT TERM 1427 1612731 - 1612716 - f 73 -9 -2.56288 | opp_overlap 1612714 1612713 1612712, overlap 1612712 AAAGTATTGAATTTA CCTTGC TTTT GCAAGG TAGTAATTTTGGTAT TERM 1428 1612809 - 1612793 - f 91 -6.7 -5.43621 | ATAAAGCATAAAAAA TAAAAAG GAT CTTTTTA TGGACATTATGATTA CFF8240_1644 1612809 - 1614146 + | anaerobic C4-dicarboxylate transporter TERM 1429 1614155 - 1614173 + F 83 -10.3 -2.95068 | overlap 1614147 GCTTTAATTTTCTTA GTCCGAC AACAA GTCGGAC TATCTAAATATATTA TERM 1430 1614337 - 1614295 - f 95 -8.8 -5.0666 | overlap 1614291 1614296 TATCCAAAAAATAAA TTGGTAATAAATTTAATACA AGA TATTTTAAATTTATTACCAG ATGCTAACTATATAG TERM 1431 1614336 - 1614296 - f 95 -12.3 -3.62369 | overlap 1614295 1614291 ATCCAAAAAATAAAT TGGTAATAAATTTAATACA AGA TATTTTAAATTTATTACCA GATGCTAACTATATA TERM 1432 1614515 - 1614529 + G 81 -10 -3.41051 | opp_overlap 1614511 TAAATAGTAAGGTTA TGGCGA TTA TCGCCA TTATAATGGCAATGC TERM 1433 1614794 - 1614778 - g 74 -2.3 -5.55695 | GAAGAATATAAAAAA TTATTAG GTA CTACTAA GCTGCAAACAGATGA CFF8240_1645 1614490 - 1616127 + | methyl-accepting chemotaxis protein TERM 1434 1616128 - 1616172 + T 100 -9.7 -4.6955 | gap 2, opp_overlap 1616123 1616138, overlap 1616134 AAAAAGAAATTCTAA CCGGGT--TAAATTTGAGCTT TTATT AAGCTCAAATTTATTATCCGG TTTTATCTCTTAATC TERM 1435 1616134 - 1616164 + T 100 -12.9 -3.43437 | opp_overlap 1616123 1616138, overlap 1616128 AAATTCTAACCGGGT TAAATTTGAGCTT TTATT AAGCTCAAATTTA TTATCCGGTTTTATC TERM 1436 1616160 - 1616138 - T 84 -9.3 -3.55622 | opp_overlap 1616134 1616128 TCTAACCGGGTTAAA TTTGAGCTT TTATT AAGCTCAAA TTTATTATCCGGTTT CFF8240_1646 1617697 - 1616198 - | DsbB family disulfide bond formation protein TERM 1437 1617643 - 1617618 - G 77 -4.7 -5.09259 | TATCCGAAAATAAAA TTAGCAATCCC GACC GGAAGCGCTAA AATACCTATTGCCGC CFF8240_1647 1617872 - 1617708 - | hypothetical protein CFF8240_1648 1620136 - 1618046 - | ferric receptor CfrA exbB 1620353 - 1620790 + | TonB-system energizer ExbB TERM 1438 1620951 - 1620941 - g 70 -4 -4.9934 | AGAAGACGATAAAAA TAGA CTT TCTA TAATAATAGATAAAG expD 1620774 - 1621163 + | TonB system transport protein ExbD CFF8240_1651 1621160 - 1621885 + | protein TonB TERM 1439 1623005 - 1622989 - g 71 -3 -5.12474 | TACAACATAGAAAAA GCTAAA GAGAT CTTAGC AAATGATGGCTGGGA CFF8240_1652 1622020 - 1623555 + | peptide ABC transporter, periplasmic peptide-binding protein CFF8240_1653 1623555 - 1624505 + | peptide ABC transporter, permease protein TERM 1440 1625103 - 1625079 - g 82 -10.1 -3.56568 | opp_overlap 1625094, overlap 1625077 1625097 TGATATTTATAAATA TCTGCGCTCAT GCC ATAAGCACAGA AGCGCTGCTTAGTTT CFF8240_1654 1624508 - 1625290 + | peptide ABC transporter, permease protein CFF8240_1657 1625894 - 1626553 + | nickel import ATP-binding protein NikE CFF8240_1656 1627811 - 1626546 - | arsenical pump membrane protein CFF8240_1658 1627934 - 1628548 + | hypothetical protein CFF8240_1659 1628545 - 1629180 + | hypothetical protein CFF8240_1660 1629243 - 1629530 + | hypothetical protein TERM 1441 1630483 - 1630451 - g 71 -6.4 -4.14392 | gap 1, overlap 1630462 TTTGAACCGTTAAAA GGCAAAAAACAGGTC AAAA AACC-GTTTTTAGCC AGAGAAGGAGCAAAT CFF8240_1661 1629548 - 1630723 + | glutathionylspermidine synthase family protein TERM 1442 1630801 - 1630772 - g 70 -8 -3.18264 | opp_overlap 1630777, overlap 1630773 1630777 GTGCTCATCTAGGAA TCAAACTAGCAA ATGCTA TTGCTAGTTTGG AAAATGATACGCATA TERM 1443 1630800 - 1630773 - g 82 -11.5 -2.50816 | opp_overlap 1630777, overlap 1630772 1630777 TGCTCATCTAGGAAT CAAACTAGCAA ATGCTA TTGCTAGTTTG GAAAATGATACGCAT CFF8240_1662 1630723 - 1631265 + | phenylacrylic acid decarboxylase TERM 1444 1631763 - 1631775 + G 81 -9.1 -3.76174 | overlap 1631762 AAGATAGAGTCGGCT GGGCT AAA AGCCC TATTTTCGTGCATTT hprA 1631378 - 1632310 + | 2-hydroxyacid dehydrogenase TERM 1445 1632547 - 1632536 - g 70 -2.2 -5.24551 | GCAAACTAATAAAAA GAGA GATT CCTC CTGTTGCTATAACCG CFF8240_1664 1632313 - 1632810 + | nucleotide-binding protein CFF8240_1665 1632820 - 1633491 + | disulfide isomerase TERM 1446 1633700 - 1633683 - g 74 -6.3 -4.36649 | TATATTACAAAATAA TCTGCCA AAAA TAGCAGA CACAAACAAAACATA TERM 1447 1634604 - 1634585 - g 74 -2.2 -5.58209 | opp_overlap 1634585 GCAAATTTAAAAAAA GAGATA AAATAAGA TATCTC TTTTTAACGCAGTTA CFF8240_1666 1633579 - 1634886 + | coproporphyrinogen III oxidase CFF8240_1667 1636751 - 1635042 - | ATPase, AAA family protein CFF8240_1668 1638292 - 1636748 - | acyl-CoA synthetase TERM 1448 1637018 - 1637036 + g 70 -4.6 -4.68539 | overlap 1637016 1637028 ATAAATTATCTCTTC TATCTCTC TTG GATAGATA TTTTGTCCTTTTGAT CFF8240_1669 1639578 - 1638295 - | membrane protein TERM 1449 1638662 - 1638651 - G 70 -4.4 -4.77036 | overlap 1638652 CTGGATGATCAAAAA CTTC CTCA GAAG GAACTCTAGTTGCAT CFF8240_1670 1640426 - 1639578 - | endonuclease 4 TERM 1450 1639903 - 1639926 + g 77 -5.2 -5.02074 | overlap 1639905 GTATCAATACAAACT CCGATGCGAT TTTT ATCGCAACTG TTTTTTACCAAGTAG TERM 1451 1639905 - 1639924 + g 71 -6.4 -4.13963 | overlap 1639903 ATCAATACAAACTCC GATGCGAT TTTT ATCGCAAC TGTTTTTTACCAAGT CFF8240_1671 1640899 - 1640423 - | hypothetical protein CFF8240_1673 1641383 - 1641964 + | hypothetical protein CFF8240_1674 1642037 - 1643401 + | hypothetical protein TERM 1452 1644201 - 1644181 - g 88 -7 -4.86822 | AATTAGACAATAAAA TCATATGT AACAA ACATATGA TAAGCAAAGAAGAAT CFF8240_1676 1643913 - 1645268 + | hypothetical protein TERM 1453 1645535 - 1645525 - g 71 -5.4 -4.58236 | GATAAAACAGCAAAA GTCT GTG AGAC ACTACTTTTAGAAAA CFF8240_1677 1645258 - 1646610 + | CRISPR-associated RAMP protein CFF8240_1678 1646607 - 1647044 + | hypothetical protein TERM 1454 1647201 - 1647177 - g 71 -6.5 -4.12188 | CTATCACCGCTAAAA GCCCGATTTTT ATC AAAAATCATGC ATCGAAAGATAATAA TERM 1455 1647647 - 1647637 - g 85 -6.8 -5.25772 | opp_overlap 1647636 AAATGATAACAAAAA CGCT CAG AGCG GTCAATTAGTTTTTA TERM 1456 1648137 - 1648103 - g 79 -3.6 -5.46129 | overlap 1648108 1648110 CAACAAACCAAAAAA GCAAATCCATATATCA CGC TGATAAATGAAGATGC TAAGATATCGGGCTG CFF8240_1679 1647041 - 1648546 + | hypothetical protein CFF8240_1680 1648566 - 1648688 + | hypothetical protein TERM 1457 1648760 - 1648789 + T 93 -12.4 -2.53759 | opp_overlap 1648739 1648763, overlap 1648763 ACTTAAGAACCTTGA TAAGTCTTTGAG AAAATC CTCAAAGACTTA TAGCTTAAAAATATT TERM 1458 1648786 - 1648763 - T 88 -10.4 -3.34947 | opp_overlap 1648760 1648763, overlap 1648739 TAAGAACCTTGATAA GTCTTTGAGA AAAT CCTCAAAGAC TTATAGCTTAAAAAT TERM 1459 1648763 - 1648786 + T 82 -9.7 -3.42056 | opp_overlap 1648739 1648763, overlap 1648760 TAAGAACCTTGATAA GTCTTTGAG AAAATC CTCAAAGAC TTATAGCTTAAAAAT TERM 1460 1649476 - 1649445 - T 73 -5.3 -4.7153 | opp_overlap 1649446, overlap 1649446 AAACAATCTTAAAAA CTGAATTTAGCTT AAAATA AAGCCAAATTCAT ATAATTACTTAGAAT TERM 1461 1649475 - 1649446 - T 75 -8.8 -3.41291 | opp_overlap 1649446, overlap 1649445 AACAATCTTAAAAAC TGAATTTAGCTT AAAATA AAGCCAAATTCA TATAATTACTTAGAA CFF8240_1686 1650200 - 1649481 - | TerC protein purN 1650780 - 1650193 - | phosphoribosylglycinamide formyltransferase CFF8240_1688 1652156 - 1650771 - | YjeF-related protein TERM 1462 1651008 - 1651019 + g 73 -7.2 -4.07568 | overlap 1651000 GTTTTTGGCTATGAT GGCG TTTG CGCC TTTTAAAACCAAAAC TERM 1463 1651760 - 1651782 + g 80 -4.9 -5.33405 | opp_overlap 1651760 1651758 TTATCAAATTTAACA TTTGCACGA TTTTT TCGTCCAAA TTTTTATTTAGTCCA CFF8240_1689 1653667 - 1652153 - | putative Mg chelatase-like protein def 1654182 - 1653664 - | peptide deformylase CFF8240_1691 1655265 - 1654183 - | diguanylate cyclase clpP 1655867 - 1655277 - | ATP-dependent Clp protease proteolytic subunit TERM 1464 1655518 - 1655537 + g 80 -7.2 -4.63486 | gap 1 ATTATACGAGAGTTT GGAAGAGCG TAA CGCT-TTCC TTTTGTTCCGCAACT tig 1657174 - 1655867 - | trigger factor TERM 1465 1656360 - 1656380 + g 72 -4.7 -4.78572 | TCTTTGATTCTATCT TCTAGTTGC TCG GCAGTTGGA TTTTCTTCATTAGGC TERM 1466 1657130 - 1657148 + g 71 -7.4 -3.67068 | TTTAACTTCAGTTTG CGCAGCAG CAT TTGCTGTG TTTAAAAGTTTTGCT folE 1657308 - 1657895 + | GTP cyclohydrolase I fliI 1657892 - 1659196 + | flagellum-specific ATP synthase TERM 1467 1659353 - 1659341 - f 74 -4.9 -5.0065 | opp_overlap 1659348, overlap 1659348 1659352 CATTCAGAAATAAAA GATAA AAT TTATC CTAATTAAATTTAGG TERM 1468 1659490 - 1659477 - g 71 -5.3 -4.62069 | TTTTTAGGCGAAAAA TTTGG TAAT CCAAA CTCACTTCACTCATA CFF8240_1696 1659393 - 1660583 + | cysteine desulfurase TERM 1469 1661035 - 1661025 - g 83 -8.2 -4.40804 | TACGATGTTATAAAA GCCG CTG CGGC TAGCTATAAAGGCGT CFF8240_1697 1660605 - 1661606 + | nitrogen fixation protein NifU TERM 1470 1661647 - 1661676 + F 81 -8.8 -4.20769 | opp_overlap 1661647 CATACTTATAAACAA TAGTTTAAGGCT AATTTA AGTCTTAAACTA TTTATATTAACCTAT TERM 1471 1661676 - 1661647 - f 72 -6.6 -4.10188 | opp_overlap 1661647 CATACTTATAAACAA TAGTTTAAGGCT AATTTA AGTCTTAAACTA TTTATATTAACCTAT TERM 1472 1661756 - 1661728 - f 70 -7.7 -3.45381 | opp_overlap 1661727 1661732 1661748, overlap 1661732 TAATATAAAATTTAA TAAACTAAACAAT ACT ATTTTTTAGTTTA AATTATATAATAAAT TERM 1473 1661933 - 1661919 - g 82 -4.3 -5.43621 | overlap 1661921 ACAAAGGATAAAAAA TGTTG TTTTT CAACA AAAGCATAGCAAGCA TERM 1474 1662781 - 1662770 - g 78 -2.2 -5.62219 | AATATACTAAAAAAA CAAC TATG GCTG TCTGCATTATATATT CFF8240_1698 1661918 - 1663879 + | methyl-accepting chemotaxis protein TERM 1475 1663889 - 1663870 - f 77 -2.3 -5.78622 | opp_overlap 1663875, overlap 1663875 TGATGCGAAAAAAAA TAAATTT TAACAT AAATTTA ATTGCATTTTAATTG CFF8240_1699 1664041 - 1664592 + | hemerythrin family non-heme iron protein CFF8240_1700 1664977 - 1664600 - | TM2 domain-containing protein TERM 1476 1665148 - 1665121 - R 90 -10.6 -3.73647 | TTTATTTATGAAGAA GTGGCAACTAGC CTGG GCTAGTAACCAC AAGGCTAAAGTTTAT infC 1665678 - 1665160 - | translation initiation factor IF-3 thrS 1667528 - 1665675 - | threonyl-tRNA synthetase TERM 1477 1666059 - 1666073 + g 76 -4.2 -5.03713 | CATAATGGCACGATG CAGCAT AAC AGGCTG TTTTCTTTCGTTATT TERM 1478 1667673 - 1667712 + r 70 -5.2 -4.48299 | opp_overlap 1667675 1667711, overlap 1667675 CGATTTTTAATTATA AATTTAGACAGACAATTA ATTA TATTTATCTGTCTAAATA TTTATTTAAATATAA TERM 1479 1667675 - 1667710 + r 73 -7.8 -3.84346 | opp_overlap 1667675, overlap 1667673 ATTTTTAATTATAAA TTTAGACAGACAATTA ATTA TATTTATCTGTCTAAA TATTTATTTAAATAT TERM 1480 1667710 - 1667675 - R 91 -10 -4.05714 | opp_overlap 1667675 1667673 ATTTTTAATTATAAA TTTAGACAGACAATTA ATTA TATTTATCTGTCTAAA TATTTATTTAAATAT CFF8240_1703 1668428 - 1667781 - | hypothetical protein CFF8240_1704 1668888 - 1669019 + | hypothetical protein TERM 1481 1669709 - 1669680 - T 91 -10.1 -3.96999 | overlap 1669678 TCATATCTAAAAAGA TTGCCCCTTGCTT TTTA AAGCAAGGAGAAA AAAATGGTTATAGCC CFF8240_1705 1670145 - 1669870 - | plasmid stabilization system protein CFF8240_1706 1670381 - 1670139 - | YdaT, putative TERM 1482 1671227 - 1671204 - R 80 -8.8 -3.92522 | gap 1 TTTCAATGTTAGAAA GGGGGTGCGGC TTA GGCG-ACCCCC GTATGAAATGATATT CFF8240_1708 1672761 - 1671982 - | hypothetical protein TERM 1483 1672776 - 1672804 + r 82 -2.5 -6.01725 | gap 1 TTTATATTCTTTTAA GGCGGTTTAG TTTTGTTGCT CTAA-CCGCC TTTTTTGTTTTTATT TERM 1484 1672826 - 1672859 + r 100 -9.8 -5.0925 | opp_overlap 1672839 GTTTTTATTATTCAG CTTGATGAGATTAT TTTGTT AAAATCTCATCAAG TTTTTACTTTTGCCG CFF8240_1709 1672978 - 1672844 - | hypothetical protein CFF8240_1710 1673310 - 1673095 - | hypothetical protein CFF8240_1711 1674559 - 1673321 - | phage integrase family site specific recombinase TERM 1485 1673650 - 1673664 + g 83 -5.8 -5.11033 | overlap 1673656 TACCAAAAACGTACT CATTTA CTC TAAATG TTTTTTGAGATTCTA CFF8240_1712 1674918 - 1674691 - | hypothetical protein TERM 1486 1675347 - 1675309 - R 71 -4 -5.00895 | opp_overlap 1675320, overlap 1675311 1675320 TGGATTATATAAAAA TATCGCTTAAATTTGGGT AAA ACCCAAATTTAAATCAAA TGCGCCTTTATAATC TERM 1487 1675346 - 1675311 - R 81 -8.6 -4.12748 | gap 1, opp_overlap 1675320, overlap 1675309 1675320 GATTATATAAAAATA TCG-CTTAAATTTGGGT AAA ACCCAAATTTAAATCAA ATGCGCCTTTATAAT TERM 1488 1675320 - 1675336 + r 84 -9.5 -3.65902 | opp_overlap 1675311 1675309 1675320 AAAATATCGCTTAAA TTTGGGT AAA ACCCAAA TTTAAATCAAATGCG TERM 1489 1675336 - 1675320 - R 84 -9.5 -3.58731 | opp_overlap 1675320, overlap 1675311 1675309 AAAATATCGCTTAAA TTTGGGT AAA ACCCAAA TTTAAATCAAATGCG CFF8240_1714 1675784 - 1675338 - | transmembrane protein CFF8240_1715 1676210 - 1675848 - | TM2 lspA 1676653 - 1676210 - | lipoprotein signal peptidase glmM 1677986 - 1676646 - | phosphoglucosamine mutase rpsT 1678191 - 1678457 + | 30S ribosomal protein S20 prfA 1678469 - 1679536 + | peptide chain release factor 1 CFF8240_1720 1679562 - 1679912 + | YyaQ CFF8240_1721 1680416 - 1679913 - | isochorismatase superfamily hydrolase TERM 1490 1680341 - 1680351 + g 70 -4 -4.88736 | opp_overlap 1680338, overlap 1680338 GAAATTTAACACTGT TTTG CAA CAAA TTTTTATCGCTCATC xth 1681192 - 1680434 - | exodeoxyribonuclease III CFF8240_1723 1681315 - 1682844 + | type III effector HopAH2-2 CFF8240_1724 1682841 - 1683203 + | diacylglycerol kinase CFF8240_1726 1683248 - 1683433 + | response regulator receiver domain-containing protein CFF8240_1725 1683956 - 1683411 - | membrane protein TERM 1491 1683815 - 1683805 - G 70 -4.6 -4.65666 | AGACCCAAAAAATAA CCGA TAA CCGG CATAAAAGCTTGAAA CFF8240_1728 1684044 - 1684952 + | permeases of the drug/metabolite transporter TERM 1492 1684935 - 1684959 + T 86 -5.9 -5.43553 | ATAAAGCAAGCGACT CTTAAATTTGA AAA TTAAATTTGAG TTTTATTTTTTAGCT CFF8240_1727 1685776 - 1684949 - | cation ABC transporter, permease protein CFF8240_1729 1686528 - 1685773 - | ABC transporter ATP-binding protein CFF8240_1730 1688066 - 1686525 - | Ni2+-Co2+ transporter (NiCoT) family protein TERM 1493 1688031 - 1688004 - G 89 -13.5 -2.76093 | opp_overlap 1688009, overlap 1688009 AGGTGAATAAAGTGA GCAAAGCGCGC ATCCAA ACGCGCTTTGC AATAATAAAATTAAA CFF8240_1731 1689472 - 1688063 - | periplasmic solute binding protein TERM 1494 1688257 - 1688272 + g 74 -6.8 -4.41494 | TGATATTTGCCAACT GAGCCG GTTT TGGCTC TTTTCCTTCAGCCTC TERM 1495 1689531 - 1689517 - H 78 -8.6 -3.86916 | GAGCATTATATCAAA TGCAAC TTA GTTGCA ACTTAACAGTAAATA TERM 1496 1689845 - 1689833 - g 75 -4.9 -4.8622 | TCTTTTAAGCAAAAA TTTGA TCA TCAAA AATGAAATAGAGCAT CFF8240_1732 1689657 - 1690007 + | zinc uptake regulation protein CFF8240_1733 1689989 - 1690105 + | hypothetical protein CFF8240_1734 1690212 - 1691027 + | cytochrome c551 peroxidase TERM 1497 1693283 - 1693267 - g 73 -3.7 -5.1861 | overlap 1693268 TCGATCATCAAAAAA CTTCCGT TTG ACGAAAA TGCAAGAAGCGTCGT CFF8240_1735 1691059 - 1693455 + | diguanylate cyclase/phosphodiesterase, putative CFF8240_1736 1693468 - 1694136 + | carbonic anhydrase TERM 1498 1694932 - 1694916 - gf 82 -4.4 -5.40279 | overlap 1694930 CAAAAGAAAAGAAAA TAGCCC ACAAA GAGCTA CAAGAGCAGTTTATA CFF8240_1737 1694099 - 1695973 + | mechanosensitive ion channel family protein CFF8240_1738 1695966 - 1696139 + | hypothetical protein CFF8240_1739 1696139 - 1696312 + | hypothetical protein TERM 1499 1697485 - 1697467 - g 73 -7.4 -3.75766 | opp_overlap 1697466 TTTATAATTTAAGAA GCTCTAGC GAG GCTATAGC AAATTTTATAAGCGA CFF8240_1740 1696293 - 1697516 + | hypothetical protein TERM 1500 1697504 - 1697528 + T 72 -7.2 -3.94188 | opp_overlap 1697504 TTTTATAAGCGAGAA GCTAAACTCC TAAAC GGATTTTAGC TTATTTGAGATAAAT aroC 1698615 - 1697545 - | chorismate synthase TERM 1501 1697749 - 1697759 + g 70 -4 -5.01535 | TATACTTGGAGTCGG CTTA AAA TAAG TTTTTATCATTATAG rnc 1699283 - 1698612 - | ribonuclease III TERM 1502 1698954 - 1698966 + g 74 -6.3 -4.29073 | TAAAGCATCGCTAAC TAAGC TTG GCTTA TTTCTTCCGTTATTA rnhA 1699701 - 1699276 - | ribonuclease H CFF8240_1744 1700689 - 1699679 - | TPR repeat-containing protein TERM 1503 1700796 - 1700786 - g 76 -4 -5.2696 | TGAAAATTTAAAAAA TATC GTT GATA TAGCAGACGTTGTAG dnaG 1700751 - 1702391 + | DNA primase TERM 1504 1702797 - 1702786 - g 71 -3 -5.08824 | GGTGCATGTAAAAAA TCTA GCCT TAGA TGACAATGATATAAT CFF8240_1746 1702388 - 1703377 + | thiamine biosynthesis protein:ExsB CFF8240_1747 1703484 - 1704278 + | radical SAM family protein TERM 1505 1704881 - 1704869 - g 79 -4.1 -5.31456 | overlap 1704870 TGAAGCGACAAAAAA CGCTA AAC TAGCA GCCGAGCAATTTGCG CFF8240_1748 1704333 - 1705031 + | hypothetical protein TERM 1506 1705045 - 1705064 + T 70 -5.1 -4.72846 | opp_overlap 1705045 AAGAGATAATATTAA GAGTAAA TTAAAC TTTACTC TTTTTAGATATATGA CFF8240_1749 1706730 - 1705423 - | transport protein CFF8240_1750 1707861 - 1706815 - | surface array protein TERM 1507 1707633 - 1707661 + g 89 -11.2 -3.37522 | opp_overlap 1707631, overlap 1707634 AATTTAAAGTAAGTT TGCCAAAATGAT CTTCT ATCATTTTGGCG TTGATTCCATGAAAT TERM 1508 1707634 - 1707660 + g 86 -12.5 -2.62192 | opp_overlap 1707631, overlap 1707633 ATTTAAAGTAAGTTT GCCAAAATGAT CTTCT ATCATTTTGGC GTTGATTCCATGAAA algI 1709315 - 1707870 - | alginate O-acetylation protein (AlgI) TERM 1509 1708321 - 1708301 - G 73 -8.3 -3.55145 | AACGATGAATCATAA GAGCTGTTC CGT GAAGAGCTC CCCATATAATAAATG TERM 1510 1709046 - 1709022 - G 70 -2.1 -5.24531 | overlap 1709024 ATTTTCTATAAAAAA GTCCGTATATT TGT AATATCCGAGC AAGGCTAGATTACAC ilvD 1709452 - 1711125 + | dihydroxy-acid dehydratase TERM 1511 1711155 - 1711131 - f 70 -8.7 -2.7361 | opp_overlap 1711128 1711136, overlap 1711136 GGAAGCATAAATTTA TAAAAGGCG GAAAAAT CGCCTTTTA TGCTCATCTTAAAAC TERM 1512 1711352 - 1711307 - f 74 -8.1 -3.57263 | opp_overlap 1711312 1711314, overlap 1711308 1711310 ATTCTTATGCTTAAA TTATATATTTATTATATTTTT AACT AAAAAGATAATAAATATATAC TAGGAACAAATATGA TERM 1513 1711351 - 1711308 - f 87 -11.6 -2.74144 | opp_overlap 1711312 1711314, overlap 1711307 1711310 TTCTTATGCTTAAAT TATATATTTATTATATTTTT AACT AAAAAGATAATAAATATATA CTAGGAACAAATATG TERM 1514 1711349 - 1711310 - f 80 -9.8 -2.91695 | opp_overlap 1711312 1711314, overlap 1711308 1711307 CTTATGCTTAAATTA TATATTTATTATATTTTT AACT AAAAAGATAATAAATATA TACTAGGAACAAATA CFF8240_1753 1711364 - 1712890 + | UshA protein TERM 1515 1713367 - 1713349 - g 71 -3 -5.0916 | opp_overlap 1713349 TCGGTAATAGAAAAA GAGAGACG CGG CGACTATC TTGGTAAAACAATTC pyrG 1713031 - 1714671 + | CTP synthetase recJ 1714665 - 1716257 + | single-stranded-DNA-specific exonuclease RecJ TERM 1516 1716929 - 1716919 - g 70 -4.6 -4.74801 | TAAGCGTACTAAAAA GCGG AGT CCAC GCTACCATTGCAGGA nhaA 1716258 - 1717442 + | Na+/H+ antiporter NhaA TERM 1517 1717724 - 1717747 + G 89 -11.1 -3.55071 | opp_overlap 1717722 ATACAAGGCAAATCG GCAGAGCTA AACTCA TAGCTCTGC TTTCAAGCGATATAG TERM 1518 1717820 - 1717830 + G 91 -5.4 -5.9362 | AAGGAGGTCTTGTTG CGAT TGT ATCG TTTTTTTATATTTTA TERM 1519 1718100 - 1718088 - g 85 -6.3 -5.35459 | opp_overlap 1718088 1718087 AGATATGAGAAAAAA TATGC TAA GCATA GATTTTTACCAATCG CFF8240_1757 1717432 - 1718976 + | ABC transporter ATP-binding protein YojI TERM 1520 1719271 - 1719257 - g 82 -4.2 -5.40072 | GCGTTTCTAAAAAAA GCCG AACAAAA CGGC GAAGGATTTAAAACA CFF8240_1758 1719074 - 1719820 + | pyridoxamine 5'-phosphate oxidase family protein CFF8240_1759 1719820 - 1720014 + | hypothetical protein TERM 1521 1721045 - 1721031 - g 82 -5.7 -5.25805 | AATAAATTTAAAAAA CCGTA TGGAT TACGG CAACGGCGAGCTAAT CFF8240_1760 1720102 - 1722096 + | TonB-dependent heme receptor CFF8240_1761 1722086 - 1723066 + | hemin transport system permease protein HmuU CFF8240_1762 1723066 - 1723842 + | ferrichrome transport ATP-binding protein FhuC CFF8240_1763 1723845 - 1724639 + | hemin-binding periplasmic protein HmuT TERM 1522 1724701 - 1724722 + F 70 -5.9 -4.35524 | opp_overlap 1724701 TAAAAAATAGAAAAA GAAGTGAAT TTAA ATCCACTTC TTTTAAATTTAAACA TERM 1523 1724722 - 1724701 - f 95 -8.1 -5.41787 | opp_overlap 1724701 TAAAAAATAGAAAAA GAAGTGAAT TTAA ATCCACTTC TTTTAAATTTAAACA CFF8240_1764 1724911 - 1725420 + | flavodoxin family protein TERM 1524 1726701 - 1726732 + F 76 -6.8 -4.62336 | opp_overlap 1726707 1726711 CTATGAAAGCTTATA TCTAAATTAATCTT TTTT AAGATAAATTTGGA TTTTTAAGGTACAAT CFF8240_1768 1726782 - 1727540 + | putative periplasmic protein flgE 1730338 - 1727603 - | flagellar hook protein FlgE TERM 1525 1728853 - 1728897 + g 75 -8.5 -3.35522 | overlap 1728843 1728854 1728854 1728882 CGGCAGCTAGTACGC TTGCTGGTGTTGCACCAGCAG CAG CTGCTGCAGCAGCGATAGCAG TATTTACGGCAGTTG TERM 1526 1728854 - 1728896 + g 75 -9.8 -2.60992 | overlap 1728843 1728853 1728854 1728882 GGCAGCTAGTACGCT TGCTGGTGTTGCACCAGCAG CAG CTGCTGCAGCAGCGATAGCA GTATTTACGGCAGTT TERM 1527 1729068 - 1729081 + g 70 -8.1 -3.2352 | TTAGCAACACTTATA GCAGC ACTA GCTGC TTGACTTACATTTTC TERM 1528 1729306 - 1729328 + g 71 -5.6 -4.59376 | opp_overlap 1729311, overlap 1729311 TCTTGATATTTTTCA TAGTATCGGT GCT ACCGAGATTA TTTTGATTTACTAGT CFF8240_1770 1731163 - 1730492 - | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein dapF 1731923 - 1731180 - | diaminopimelate epimerase coaE 1732443 - 1731904 - | dephospho-CoA kinase TERM 1529 1731959 - 1731970 + g 71 -3 -5.15969 | ATAAAATTATTTAGT TCTA AATT TAGA TTTTTTAAGTTACCG TERM 1530 1732122 - 1732107 - G 77 -6.2 -4.67982 | CTCTATGCAATAAAA TATGCT CCGG AGCATA AATCAAAACAACTTT CFF8240_1773 1732900 - 1732505 - | endoribonuclease L-PSP, putative TERM 1531 1732881 - 1732869 - G 71 -7.7 -3.5486 | opp_overlap 1732868 1732879, overlap 1732867 TATCTCAAGGAAACA TCGGT ATT ACCGA GTACTTCGCTTGTTT purM 1733044 - 1734027 + | phosphoribosylaminoimidazole synthetase CFF8240_1775 1735144 - 1734059 - | patatin CFF8240_1776 1736324 - 1735131 - | recombination factor protein RarA TERM 1532 1735268 - 1735285 + g 80 -6.3 -4.79756 | AGCCTCCAAAATCAT GCGGATA TAGA TATTCGC TTTTTGCCTTATCTG CFF8240_1777 1737216 - 1736326 - | transporter TERM 1533 1737244 - 1737260 + r 82 -5.3 -5.38326 | GCAGAGTTTTTTATA TTTAAAT AGA ATTTAAA TTTTTATTTGATTAA CFF8240_1778 1737790 - 1737272 - | thiol peroxidase CFF8240_1779 1738281 - 1737868 - | RDD protein pyrE 1738889 - 1738281 - | orotate phosphoribosyltransferase frr 1739449 - 1738892 - | ribosome recycling factor CFF8240_1782 1740356 - 1739439 - | polysaccharide deacetylase TERM 1534 1739731 - 1739744 + g 72 -8.1 -3.37912 | overlap 1739729 GCCTTTAAATTTGTT CCGTC CATA GACGG TATTCTATCTAAATC CFF8240_1783 1740724 - 1740395 - | protein-export membrane protein TERM 1535 1740793 - 1740816 + r 91 -8.1 -4.91285 | opp_overlap 1740791 1740790 AATTTAGTTAAAGCT TAGCGCCGC CAAGAA GCAGCGCTA TTTTATTCTATTCGT CFF8240_1784 1741504 - 1740824 - | hypothetical protein TERM 1536 1741578 - 1741547 - R 82 -6.2 -5.15634 | opp_overlap 1741545 1741547 1741572 GAGTGTATCAAAAAA TATTTAATATAAGA TAAA TTTTATATTAAATA TATTATTTAAGTTTT TERM 1537 1741547 - 1741578 + r 76 -8.4 -3.61883 | opp_overlap 1741547, overlap 1741545 1741572 GAGTGTATCAAAAAA TATTTAATATAAGA TAAA TTTTATATTAAATA TATTATTTAAGTTTT CFF8240_1786 1742038 - 1741883 - | hypothetical protein TERM 1538 1742457 - 1742443 - H 81 -8.6 -4.1964 | opp_overlap 1742443 1742440 GGTAATATTCCAAAA CACGAA TTA TTCGTG TACATTTACTTAGGG TERM 1539 1742443 - 1742457 + H 70 -8.6 -2.70979 | opp_overlap 1742443, overlap 1742440 GGTAATATTCCAAAA CACGAA TTA TTCGTG TACATTTACTTAGGG TERM 1540 1742703 - 1742687 - H 80 -5.3 -5.33866 | opp_overlap 1742672 1742687, overlap 1742672 1742680 1742694 TAAATTTATAAAAAA TTTAAAT TTT ATTTAAA TAAATTAGAATAATA TERM 1541 1743036 - 1743046 + G 74 -6.8 -4.30844 | CAAGTAGCCGCAATC GCTC TAG GAGC TTTTAATAATCCCAT TERM 1542 1744878 - 1744865 - g 74 -2.3 -5.39721 | TTATGATATAAAAAA CTCGG GCAT CGGAG CAAGTTTAAGAGATA CFF8240_1791 1742748 - 1745948 + | serine protease TERM 1543 1745985 - 1745956 - f 78 -9.5 -3.00298 | opp_overlap 1745956 1745961, overlap 1745961 TGTTTTAACCAGATA TTAAATACCGGTT ACGT AATCGGTATTTAA TCTTAAAATCAAACC TERM 1544 1745956 - 1745985 + F 95 -11.7 -3.05844 | opp_overlap 1745956 1745961, overlap 1745961 TGTTTTAACCAGATA TTAAATACCGGTT ACGT AATCGGTATTTAA TCTTAAAATCAAACC TERM 1545 1745961 - 1745980 + F 72 -7.2 -3.93038 | opp_overlap 1745961 1745956, overlap 1745956 TAACCAGATATTAAA TACCGGTT ACGT AATCGGTA TTTAATCTTAAAATC TERM 1546 1746337 - 1746349 + F 72 -6.9 -4.07687 | overlap 1746338 TTATTTTATCTCATT TGGCG ATA CGCCG TTTTCAAAGCCACAT TERM 1547 1746338 - 1746348 + F 70 -8.2 -3.04398 | overlap 1746337 TATTTTATCTCATTT GGCG ATA CGCC GTTTTCAAAGCCACA TERM 1548 1746559 - 1746576 + F 75 -8.5 -3.38191 | TTATTATAATTTTTA TTTGAGC TATC GCTCAAA TTATCCACCTTTTTT CFF8240_1794 1747186 - 1747767 + | MdaB TERM 1549 1747779 - 1747759 - T 73 -8.3 -3.32986 | opp_overlap 1747759, overlap 1747737 1747757 1747756 CATTTAGAAAAAGTA TTCGGCTAA ATT TGAGCCGAA TTTAAAGGCTTATAG TERM 1550 1747759 - 1747779 + T 74 -8.3 -3.58533 | opp_overlap 1747737 1747759 1747757 1747756 CATTTAGAAAAAGTA TTCGGCTAA ATT TGAGCCGAA TTTAAAGGCTTATAG TERM 1551 1747786 - 1747809 + T 70 -8.2 -3.01422 | opp_overlap 1747786, overlap 1747783 TGAGCCGAATTTAAA GGCTTATAGC TCTT GTTGTAAGCC TAATTTATGCAACTC CFF8240_1795 1748095 - 1747823 - | flavodoxin CFF8240_1796 1748647 - 1748495 - | 11-cis retinol dehydrogenase CFF8240_1797 1748977 - 1748756 - | major facilitator transporter CFF8240_1798 1749355 - 1749227 - | hypothetical protein CFF8240_1799 1749681 - 1749373 - | hypothetical protein thyX 1750846 - 1750226 - | FAD-dependent thymidylate synthase CFF8240_1801 1752530 - 1750881 - | GMC oxidoreductase family protein CFF8240_1802 1753079 - 1752558 - | hypothetical protein CFF8240_1803 1753503 - 1753069 - | integral membrane protein TERM 1552 1753531 - 1753548 + r 76 -8.4 -3.66256 | opp_overlap 1753528, overlap 1753529 CTCGAAAGAGATGCA TGCGGC AAAAGA GCCGCA TATTTTGAAGCTATA CFF8240_1804 1753743 - 1753573 - | hypothetical protein TERM 1553 1753826 - 1753807 - R 78 -8 -3.93061 | opp_overlap 1753803, overlap 1753801 ATTTTAAAATTTAAA TTTGTGAT TTTC ATCACAAA ACTATATTAAATTTA CFF8240_1805 1754454 - 1753855 - | nitroreductase CFF8240_1806 1754992 - 1754477 - | nitroimidazole resistance protein, putative TERM 1554 1754606 - 1754622 + g 72 -2.9 -5.31545 | ATATTTTTCGCAAAG TAGGCGC AAA GCTTCTA TTTTTTCCTCTTCTT CFF8240_1808 1757709 - 1755946 - | hypothetical protein CFF8240_1809 1758500 - 1757736 - | pseudouridine synthase, Rsu:RNA-binding S4:pseudouridine synthase CFF8240_1810 1759480 - 1758500 - | KpsF/GutQ CFF8240_1811 1761414 - 1759477 - | metallo-beta-lactamase family protein TERM 1555 1759830 - 1759841 + g 76 -4.4 -5.02231 | CTATGAAAACCTTAC CTGT TTTT ACAG TTTTTAATCTTTTTA TERM 1556 1761100 - 1761112 + g 77 -9.1 -3.18465 | overlap 1761099 1761096 ACCGATCTCGCCAAG TCCGC CAA GCGGA GTTATTTTGATCTTA TERM 1557 1761243 - 1761256 + g 84 -6.7 -5.20783 | overlap 1761230 TTCCGCTAATTTTTA CGGTA TTAT TACCG TTTTTATGTTTGCGT ksgA 1762213 - 1761407 - | dimethyladenosine transferase CFF8240_1813 1763478 - 1762246 - | major facilitator superfamily permease TERM 1558 1763006 - 1762994 - G 84 -5.5 -5.42862 | ATACCGGCAAAAAAA GGACC CAT GATCC TAGCTATGTTTACAG hisF 1763599 - 1764357 + | imidazoleglycerol phosphate synthase, cyclase subunit CFF8240_1815 1764354 - 1764893 + | purine nucleoside phosphorylase CFF8240_1816 1764890 - 1765954 + | radical SAM protein TERM 1559 1766106 - 1766094 - g 77 -3.3 -5.52023 | ACTACTAATAAAAAA GACGA AAT CCGCC GAAAAAATCATAAAA CFF8240_1817 1765951 - 1766250 + | TfoX domain-containing protein CFF8240_1818 1767360 - 1766401 - | RNA pseudouridine synthase TERM 1560 1766476 - 1766506 + g 84 -6.3 -5.07567 | gap 1, overlap 1766479 1766480 AAATTTAACTGATTT TGCGTGGAGCATTA GCCT TGATGCTCCA-GTA TTTTTTACCCTATCG TERM 1561 1766479 - 1766504 + g 75 -6.9 -4.16351 | overlap 1766476 1766480 TTTAACTGATTTTGC GTGGAGCATTA GCCT TGATGCTCCAG TATTTTTTACCCTAT TERM 1562 1766480 - 1766503 + g 80 -10.4 -3.08726 | overlap 1766479 1766476 TTAACTGATTTTGCG TGGAGCATTA GCCT TGATGCTCCA GTATTTTTTACCCTA TERM 1563 1767385 - 1767418 + H 76 -7.1 -4.30719 | ACATTTCAGCCTTAT TTTTGTATAATTT CAACTTAA AAATTATACAAAA TTTATTATAAAAAAG purB 1767442 - 1768770 + | adenylosuccinate lyase TERM 1564 1768785 - 1768809 + F 80 -5.9 -5.1861 | opp_overlap 1768785 1768783 GTACTAAATAATACA GCTAAATTT AGTCGGC AAATTTAGC TTTTTTGATAATCAA TERM 1565 1769218 - 1769201 - g 74 -2.1 -5.45802 | gap 1, overlap 1769203 1769204 GGTCTAAAAGAAAAA TACGATCT TGA AGATC-TA AACGCATATATAAAG CFF8240_1820 1768847 - 1771222 + | ribonucleotide-diphosphate reductase subunit alpha lysP 1771451 - 1772920 + | lysine-specific permease TERM 1566 1772968 - 1772943 - T 100 -9.1 -5.22943 | opp_overlap 1772945, overlap 1772945 AGCAAATTTAAAAAA TATTTAGCGGA GCTT TCCGCTAAATT TAACTAATTCTCACA TERM 1567 1772966 - 1772945 - T 100 -11.7 -4.23298 | opp_overlap 1772945, overlap 1772943 CAAATTTAAAAAATA TTTAGCGGA GCTT TCCGCTAAA TTTAACTAATTCTCA TERM 1568 1772945 - 1772966 + T 95 -11.7 -3.72984 | opp_overlap 1772945 1772943 CAAATTTAAAAAATA TTTAGCGGA GCTT TCCGCTAAA TTTAACTAATTCTCA ruvC 1773441 - 1772968 - | Holliday junction resolvase