TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.690222 %AT, 1487705 nt, 8982 terms. Intergenic: 0.735986 %AT, H2T: 142429 nt, 1062 terms; T2T: 29528 nt, 657 terms; H2H: 34414 nt, 627 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|15791399|ref|NC_002163.1| Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome (length 1641481) dnaA 1 - 1323 + | chromosomal replication initiator protein TERM 1 2094 - 2113 + G 73 -3.7 -5.31275 | opp_overlap 2093 2092 GGAAATGCAAAAACT TTTCTAT GAAAAA ATAGAAA TTTTTTATGATCAAA TERM 2 2478 - 2464 - g 72 -2.8 -5.35721 | overlap 2466 ATAGAAGAAGAAAAA TTCACT TTA AGTGTA AATGAACCTAATTCA dnaN 1483 - 2550 + | DNA polymerase III subunit beta TERM 3 2678 - 2642 - g 79 -7.3 -4.386 | GAAGCTGTTAGAAAA CGCCCAGGTATGTATAT AGG AGATACAAACATAGGCG GACTTCATCATATGA TERM 4 3285 - 3272 - g 74 -5.3 -4.88687 | opp_overlap 3272 TTAAATAAAAAAGAA GCTTT AACT AAAGC AATTTTCTTTAGTGT gyrB 2579 - 4888 + | DNA gyrase subunit B TERM 5 4895 - 4923 + T 100 -10.5 -5.18371 | opp_overlap 4893 4896 4904 4908, overlap 4896 GATGTGTAAAAATTT ATCATTGAAGAAA TCA TTTCTTCAATGAG TTTTGTTTTGTAAGA TERM 6 4896 - 4922 + T 100 -14 -3.69938 | opp_overlap 4893 4896 4904 4908, overlap 4895 ATGTGTAAAAATTTA TCATTGAAGAAA TCA TTTCTTCAATGA GTTTTGTTTTGTAAG TERM 7 4922 - 4896 - T 100 -14 -2.84171 | opp_overlap 4896 4895, overlap 4893 4904 4908 ATGTGTAAAAATTTA TCATTGAAGAAA TCA TTTCTTCAATGA GTTTTGTTTTGTAAG Cj0004c 5257 - 4916 - | monohaem cytochrome C Cj0005c 6498 - 5260 - | molydopterin containing oxidoreductase TERM 8 5887 - 5905 + g 77 -7.4 -4.31065 | opp_overlap 5886 5888, overlap 5882 5888 AACTCCTCTACTAAT AGGTGAAG TTT CTTCACCA TTTAATTTTGTATCT TERM 9 5904 - 5888 - G 85 -10.9 -3.13522 | opp_overlap 5887 5882 5888, overlap 5886 ACTCCTCTACTAATA GGTGAAG TTT CTTCACC ATTTAATTTTGTATC TERM 10 5888 - 5904 + g 85 -10.9 -3.17012 | opp_overlap 5888 5886, overlap 5887 5882 ACTCCTCTACTAATA GGTGAAG TTT CTTCACC ATTTAATTTTGTATC TERM 11 6435 - 6413 - G 78 -4.2 -5.45802 | TTCTCAAAAGAAAAA TTTGACAATA CAC TAATGCCAAA TAAACCAAGTCCTAT TERM 12 6540 - 6596 + H 73 -5.7 -4.59919 | opp_overlap 6553 6568, overlap 6533 6534 6544 6568 TCTTTTATTTTATTA TAAATTTTAAAAATTTAAATAATTAAT ATA ATTAATTATTTAAATTAAAAAAATTAA TTATTTTTATAATTT TERM 13 6583 - 6553 - H 100 -11.6 -4.72486 | opp_overlap 6534 6544 6540 6568, overlap 6568 TATAAATTTTAAAAA TTTAAATAATTAAT ATA ATTAATTATTTAAA TTAAAAAAATTAATT TERM 14 6902 - 6890 - g 70 -4.1 -4.91084 | AAGAAAATTTAAAAA CAGCT CTT AGCTA TATACTTTTAGGGGC Cj0006 6703 - 8010 + | putative Na+/H+ antiporter family protein TERM 15 8868 - 8850 - g 78 -9.6 -3.13403 | overlap 8848 GCTTTTCGACTAATA CCTTCCCA AGT TGGGAAAG AGCCCATCCAAACCG TERM 16 9940 - 9930 - g 78 -4 -5.44721 | ATTATTCTAAAAAAA CTTT AGA AAAG GCTTTAGATGAACTT TERM 17 11021 - 11048 + G 73 -9.2 -2.64416 | opp_overlap 11021, overlap 11012 11020 TTAATGGGCTTTAAA GTCTATCCTTGG ATAG CTAAGGCTAGAC ATTCTACTGCAGGTG TERM 18 12535 - 12521 - g 86 -7.2 -5.28826 | AAATTCGATAAAAAA GACTTT TTT AAAGTC ATGCCAAGAGATTAT gltB 8144 - 12634 + | glutamate synthase (NADPH) large subunit TERM 19 13164 - 13147 - g 72 -4.3 -5.14949 | AACAAAAGAACAAAA TATTTAT ATTG ATAAATA TCAGCAAAAATGGTT TERM 20 13512 - 13522 + G 79 -5.4 -5.28414 | opp_overlap 13507 13512 TCTCTAAAGATTTAA TCCT TAA AGGA TTTTTATATTTATTC Cj0008 12644 - 14395 + | conserved hypothetical protein Cj0008 TERM 21 14521 - 14509 - g 71 -3.4 -5.24129 | CCTTTGGATAAAAAA GAAC AAGAA GTTC AAGGTGGACGATGTA TERM 22 14794 - 14778 - g 77 -4.5 -5.31275 | TGTGAGCATAAAAAA TAATGAA TTA TCCATTA TAGAAAATGCTTTTA gltD 14398 - 15843 + | putative oxidoreductase rnhB 16419 - 15844 - | ribonuclease HII TERM 23 16452 - 16433 - R 76 -6.4 -4.58685 | opp_overlap 16436, overlap 16436 AAATTTTTCTAAAAA GAAGGGCA AAAA TGCCCTTT TATTCTATTGTGATA TERM 24 16436 - 16449 + r 95 -8.1 -4.92791 | opp_overlap 16433 16436 TTTTTCTAAAAAGAA GGGCA AAAA TGCCC TTTTATTCTATTGTG TERM 25 16449 - 16436 - R 83 -8.1 -4.40561 | opp_overlap 16436, overlap 16433 TTTTTCTAAAAAGAA GGGCA AAAA TGCCC TTTTATTCTATTGTG Cj0011c 16691 - 16452 - | putative non-specific DNA binding protein. Functional classification-Synthesis and modification of macromolecules-DNA replication,restriction/modification, recombination and repair rrc 17403 - 16756 - | non-haem iron protein ilvD 17563 - 19239 + | dihydroxy-acid dehydratase TERM 26 19234 - 19256 + T 100 -13.6 -4.03815 | opp_overlap 19237, overlap 19230 19237 GCGGTTTTAGATATG GAATGAAAGG CTT CCTTTCATTC TTCTATTTCTTTGGT TERM 27 19237 - 19253 + T 87 -9.5 -4.10632 | opp_overlap 19237, overlap 19234 19230 GTTTTAGATATGGAA TGAAAGG CTT CCTTTCA TTCTTCTATTTCTTT TERM 28 19253 - 19237 - T 78 -9.5 -3.15999 | opp_overlap 19237 19234 19230 GTTTTAGATATGGAA TGAAAGG CTT CCTTTCA TTCTTCTATTTCTTT Cj0014c 19775 - 19251 - | putative integral membrane protein Cj0015c 21093 - 19867 - | hypothetical protein Cj0016 21159 - 21833 + | putative transcriptional regulatory protein TERM 29 21851 - 21822 - T 93 -10.9 -4.01786 | opp_overlap 21821 21820 21818 21817, overlap 21824 AAAGATAAGATTAAA TATAAGTCCTAGT TTTC ACTAGGACTTAAA GCTTAGTTTAAAGTA TERM 30 21849 - 21824 - T 100 -13.5 -3.57873 | opp_overlap 21821 21820 21818 21817, overlap 21822 AGATAAGATTAAATA TAAGTCCTAGT TTTC ACTAGGACTTA AAGCTTAGTTTAAAG dsbI 23380 - 21854 - | disulphide bond formation protein TERM 31 21938 - 21928 - G 74 -5.4 -4.87803 | opp_overlap 21928 CATCTTTAAAGAAAA TGCT TCT AGCA TTAGTGATAGAGCTT TERM 32 22006 - 22016 + g 72 -5.4 -4.7497 | overlap 22003 GATCAATTACGGCAA TCAC ATT GTGA TTTTTGCTAAGTGCA TERM 33 22375 - 22394 + g 72 -8 -3.54424 | opp_overlap 22379, overlap 22379 CATTAGGATTTTTTG CAAATCTT AAGA AAGATTTG TTTGAGCCCATAAGA dba 23559 - 23392 - | disulphide bond formation protein TERM 34 23660 - 23633 - R 85 -10.1 -3.66095 | AAATTTTTATTGAAA TTTCACGTTAA GTTAAA TTAACGTGAAA AAAGTTACTGAAAGC Cj0019c 25443 - 23665 - | putative MCP-domain signal transduction protein TERM 35 24097 - 24115 + g 76 -8.9 -3.53811 | ATGTTCGCCTGCTCT TGCAGCT TCGAT AGCTGCA TTTAGGGCAAGTAAA Cj0020c 26347 - 25433 - | cytochrome C551 peroxidase Cj0021c 27289 - 26411 - | putative fumarylacetoacetate (FAA) hydrolase family protein Cj0022c 28304 - 27402 - | putative ribosomal pseudouridine synthase purB 28382 - 29710 + | adenylosuccinate lyase nrdA 29726 - 32095 + | ribonucleotide-diphosphate reductase subunit alpha TERM 36 32131 - 32097 - T 87 -9.5 -4.15788 | opp_overlap 32105, overlap 32099 32100 32105 AAGGTTGCCAATAAA TACTAAAACCCAATG AAAAG CATTGGGTTTTAAAA GATTAAGAATTGTAA TERM 37 32129 - 32099 - T 95 -12.1 -3.6761 | opp_overlap 32105, overlap 32097 32100 32105 GGTTGCCAATAAATA CTAAAACCCAATG AAAAG CATTGGGTTTTAA AAGATTAAGAATTGT TERM 38 32128 - 32100 - T 100 -13.4 -2.80244 | opp_overlap 32105, overlap 32099 32097 32105 GTTGCCAATAAATAC TAAAACCCAATG AAAAG CATTGGGTTTTA AAAGATTAAGAATTG TERM 39 32123 - 32105 - T 91 -8.9 -4.55446 | opp_overlap 32105, overlap 32100 32099 32097 CAATAAATACTAAAA CCCAATG AAAAG CATTGGG TTTTAAAAGATTAAG TERM 40 32105 - 32123 + T 84 -8.9 -4.11484 | opp_overlap 32105 32100 32099 32097 CAATAAATACTAAAA CCCAATG AAAAG CATTGGG TTTTAAAAGATTAAG Cj0025c 33519 - 32134 - | putative sodium:dicarboxylate family transmembrane symporter TERM 41 32802 - 32816 + g 73 -8.6 -3.1829 | opp_overlap 32802, overlap 32800 AAGGCATAAATCTAA TGACTG TAG CAGTCA TGTTCATCATAATAT TERM 42 32816 - 32802 - G 74 -8.6 -3.34113 | opp_overlap 32800 32802 AAGGCATAAATCTAA TGACTG TAG CAGTCA TGTTCATCATAATAT thyX 34262 - 33639 - | FAD-dependent thymidylate synthase TERM 43 35519 - 35505 - g 75 -4.3 -5.26907 | opp_overlap 35505 CAAGAGAAAATAAAA TTCCT TTTTT AGGAA TTTGTTTAGGTATGC pyrG 34382 - 36013 + | CTP synthetase TERM 44 36366 - 36346 - g 72 -8.3 -3.27164 | overlap 36348 CAGTAGATAATGGAA TAGCTGCTC TTG AAGCAGCCA AACTCTGTAAAGAAA TERM 45 36364 - 36348 - g 73 -8.7 -3.19511 | overlap 36346 GTAGATAATGGAATA GCTGCTC TTG AAGCAGC CAAACTCTGTAAAGA TERM 46 36849 - 36831 - g 70 -6 -4.21351 | overlap 36814 AAAGATTTTAATAAA GCTTTAGA ATA TCTAGAGC AAATTGTTAGTTTTA recJ 36000 - 37571 + | putative single-stranded-DNA-specific exonuclease TERM 47 38318 - 38301 - g 70 -8.5 -3.05384 | overlap 38270 CTCCTTTTGATGTAA GCAAACT CACA AGTTTGC CAAAAGTAGATATTC ansA 37667 - 38662 + | cytoplasmic L-asparaginase TERM 48 38707 - 38684 - f 82 -9.7 -3.62518 | opp_overlap 38678 TTAAATATTTCTAAA CTTAGGGAA CTTATC TTCCCTAAG TCAAGCCTTTCAATC TERM 49 39203 - 39181 - f 72 -4.3 -4.99435 | opp_overlap 39181 TCTAATAATTAAAAA GATTAAAAA CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 50 39231 - 39212 - f 72 -8 -3.31322 | TTTAATCTTTCATAA CTTTTTCT TTGA AGAAAAAG ATTAAACTATCTATA TERM 51 39268 - 39231 - f 72 -4.3 -5.06414 | opp_overlap 39238 TTCTTTGAAGAAAAA GATTAAACTATCTATAA TTTT TTATGGAGAGTTTGATC CTGGCTCAGAGTGAA TERM 52 40730 - 40747 + F 74 -9.1 -3.07291 | opp_overlap 40730 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 53 41216 - 41238 + F 86 -7.8 -4.56187 | overlap 41218 TTAATATATATACTT CCTTTAGGTT TTA AACCTAAATG TTCTTTTTAATTATC TERM 54 41218 - 41236 + F 83 -9 -3.86437 | overlap 41216 AATATATATACTTCC TTTAGGTT TTA AACCTAAA TGTTCTTTTTAATTA TERM 55 41836 - 41819 - f 91 -11.3 -3.66803 | opp_overlap 41818 41817, overlap 41812 GCGCAAGAGGGCAAA CCCAGTG CTTG CACTGGG GGTTGTAGGACTGCA TERM 56 44485 - 44495 + F 70 -5.4 -4.57341 | AATAAAGCATCACTT CCTT GTT AAGG TTTTTAAGAAGACTT TERM 57 45848 - 45830 - g 80 -2.4 -5.69068 | GAAAAATATAAAAAA GCTAAAGA TAT TATTCAGC ATAAATGGAGCAATA Cj0030 44966 - 46363 + | hypothetical protein TERM 58 47425 - 47404 - g 85 -7.5 -4.94902 | opp_overlap 47397 47404, overlap 47411 TAATGATGATAAAAA TTTGAAATT TTTA AATTTCAAA AAAATCCCCGATTTT TERM 59 47760 - 47747 - g 72 -5.3 -4.74504 | ATTTTAAGCCAAAAA GAACT CATA AGTTC AAGTGTTTTAGGAAA TERM 60 48515 - 48494 - g 81 -8.1 -4.15881 | AAAGACTATAAAGAA GGCTTTTAC ACAG ATAAAAGCC ACATCAACCAAGAGA TERM 61 48575 - 48559 - g 70 -5.1 -4.57341 | opp_overlap 48559 48561, overlap 48561 AATTTCTTTTAAAAA TTTCTGC TTT GCAGATA AATTTAAAAAAGAAA Cj0031 46424 - 50156 + | putative type IIS restriction/modification enzyme TERM 62 50237 - 50214 - g 81 -6.2 -5.14819 | AAATTAAAAAAGAAA TTAAAAAAGC TAAT ACTTTTTTAA AACCTGAATTAATTA TERM 63 50660 - 50627 - g 81 -4.9 -5.46129 | gap 1, opp_overlap 50628 50629, overlap 50615 50628 50629 GAACAAATCAAAAAA CTTTCTTTTTTAAATT GTA ATTTTAAAAAAGA-AG TTTATTTAAATTTTC TERM 64 50628 - 50660 + G 81 -7.3 -4.55849 | opp_overlap 50615 50627 50628 50629, overlap 50629 AACAAATCAAAAAAC TTTCTTTTTTAAATT GTA ATTTTAAAAAAGAAG TTTATTTAAATTTTC TERM 65 50659 - 50629 - g 71 -8.6 -2.88702 | opp_overlap 50628 50629, overlap 50615 50627 50628 ACAAATCAAAAAACT TTCTTTTTTAAATT GTA ATTTTAAAAAAGAA GTTTATTTAAATTTT TERM 66 50629 - 50659 + G 74 -8.6 -3.31883 | opp_overlap 50615 50629 50627 50628, overlap 50628 ACAAATCAAAAAACT TTCTTTTTTAAATT GTA ATTTTAAAAAAGAA GTTTATTTAAATTTT Cj0033 50156 - 51937 + | putative integral membrane protein TERM 67 51927 - 51958 + T 71 -5.9 -4.48072 | overlap 51929 GAAAAAATTCCATAG TGCCAAGCTAAGC CTTAAA GCTTAGCTTGAAA TTTTATCATCAGTCT TERM 68 51929 - 51956 + T 70 -8.5 -2.5639 | overlap 51927 AAAAATTCCATAGTG CCAAGCTAAGC CTTAAA GCTTAGCTTGA AATTTTATCATCAGT Cj0034c 52668 - 51967 - | putative periplasmic protein TERM 69 52649 - 52632 - G 70 -6.3 -4.12942 | overlap 52633 TCAAACTTGCCAAAA CTATGGC TAAA GCCATAA AGATATTATTTGTTT Cj0035c 53867 - 52665 - | putative efflux protein TERM 70 54194 - 54183 - g 71 -2.2 -5.35721 | ATAGAACAAGAAAAA CTCA TAAA CGAG CAAGTAAGCCAAAAG TERM 71 54255 - 54231 - g 76 -5.1 -5.1417 | TTAGAAAAGCAAAAA TTTGAACAAGA ACT TCTTATACAAA AGCAAAATTTCCAAA Cj0036 53970 - 55319 + | hypothetical protein TERM 72 55350 - 55308 - T 100 -12.2 -4.34771 | opp_overlap 55313 55314 55316, overlap 55313 GAAAATTTAGCAAAA GATGAGGATTAATTTTGGGC TAA GCCCAAAATTAATCATTCTC CTGGGAAGTGATTTG TERM 73 55345 - 55313 - T 100 -15.1 -2.96321 | opp_overlap 55313 55314 55316, overlap 55308 TTTAGCAAAAGATGA GGATTAATTTTGGGC TAA GCCCAAAATTAATCA TTCTCCTGGGAAGTG TERM 74 55313 - 55345 + T 100 -15.1 -3.4072 | opp_overlap 55313 55308, overlap 55314 55316 TTTAGCAAAAGATGA GGATTAATTTTGGGC TAA GCCCAAAATTAATCA TTCTCCTGGGAAGTG TERM 75 55314 - 55344 + T 100 -18.6 -2.64218 | opp_overlap 55313 55308, overlap 55313 55316 TTAGCAAAAGATGAG GATTAATTTTGGGC TAA GCCCAAAATTAATC ATTCTCCTGGGAAGT TERM 76 55316 - 55342 + T 100 -15.4 -2.86271 | opp_overlap 55313 55308, overlap 55314 55313 AGCAAAAGATGAGGA TTAATTTTGGGC TAA GCCCAAAATTAA TCATTCTCCTGGGAA Cj0037c 56386 - 55343 - | putative cytochrome C Cj0038c 57211 - 56564 - | putative poly(A) polymerase family protein TERM 77 57139 - 57166 + g 86 -10 -3.74077 | opp_overlap 57139 57140, overlap 57140 GTAAGGCTTCGATAA TGCTTAGGAATT TTAA GATTCCTAAGCG TTTAAGTATATAAAG TERM 78 57165 - 57140 - G 78 -10.6 -2.57881 | opp_overlap 57140 57139, overlap 57139 TAAGGCTTCGATAAT GCTTAGGAAT TTTAAG ATTCCTAAGC GTTTAAGTATATAAA TERM 79 57140 - 57165 + g 85 -11.3 -2.84125 | opp_overlap 57139 57140, overlap 57139 TAAGGCTTCGATAAT GCTTAGGAATT TTAA GATTCCTAAGC GTTTAAGTATATAAA typA 59019 - 57211 - | GTP-binding protein TypA homolog TERM 80 57388 - 57403 + g 70 -6.2 -4.17002 | overlap 57397 ATCGCTTCCACTTGC TCTTAC ATTG GTAAGA TTCTTTCCTTTGATA TERM 81 57722 - 57743 + g 70 -5.1 -4.564 | gap 1 TCAAGTCTTGTTTGT CCATCGC-CC GTT GGTGCCATGG TTTTCATTTCAGCTT TERM 82 59233 - 59219 - g 82 -4.3 -5.64421 | AGCTGAAAGAAAAAA TGAAG TTTTG CTTCA AGTTTTAGAGCTTTT Cj0040 59154 - 59477 + | hypothetical protein TERM 83 60702 - 60684 - g 78 -6.2 -4.72272 | TTCTTTGATCAAAAA TTAAATTT TGA AAATTTAA ATAAAACTCAAGTAG fliK 59493 - 61289 + | putative flagellar hook-length control protein flgD 61343 - 62227 + | flagellar basal body rod modification protein TERM 84 63489 - 63475 - g 72 -2.8 -5.40474 | AGGCGTCGAAAAAAA TGTAGT TAC ACAACA AGATGGTGTAGCTGA flgE 62231 - 63868 + | flagellar hook protein TERM 85 63856 - 63891 + T 77 -8.6 -3.61506 | opp_overlap 63859 63864, overlap 63864 ACAAAAAGCCATTAA TATGAAAAGATAATTC TTAG GAATTATCTTTTTCTA ATTTTTTAAAAATAA TERM 86 63864 - 63883 + T 100 -8 -5.14894 | opp_overlap 63859 63864, overlap 63856 CCATTAATATGAAAA GATAATTC TTAG GAATTATC TTTTTCTAATTTTTT TERM 87 63883 - 63864 - T 83 -8 -4.44797 | opp_overlap 63864 63856, overlap 63859 CCATTAATATGAAAA GATAATTC TTAG GAATTATC TTTTTCTAATTTTTT Cj0044c 65743 - 63872 - | hypothetical protein Cj0045c 66466 - 65744 - | putative iron-binding protein TERM 88 68534 - 68505 - R 100 -13.9 -3.17212 | opp_overlap 68505 68508, overlap 68508 68532 TTAGGATTTTATTAA TAATTTCTAGGAA TTAA TTCCTAGAAATTA TTCTATAAAACCACT TERM 89 68505 - 68534 + r 100 -13.9 -3.48395 | opp_overlap 68505 68508 68532, overlap 68508 TTAGGATTTTATTAA TAATTTCTAGGAA TTAA TTCCTAGAAATTA TTCTATAAAACCACT TERM 90 68531 - 68508 - R 91 -11.2 -3.7282 | opp_overlap 68505 68508, overlap 68505 GGATTTTATTAATAA TTTCTAGGAA TTAA TTCCTAGAAA TTATTCTATAAAACC TERM 91 68508 - 68531 + r 95 -11.2 -3.88232 | opp_overlap 68508 68505, overlap 68505 GGATTTTATTAATAA TTTCTAGGAA TTAA TTCCTAGAAA TTATTCTATAAAACC trmU 69548 - 68532 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 92 69380 - 69398 + g 75 -4.6 -5.14894 | opp_overlap 69380 69381, overlap 69381 69382 69384 AAATATGATAAGGAA TTTGCAAA AAG TTTGCAAC TTTTTCTACTTTTTT TERM 93 69381 - 69397 + g 74 -8.1 -3.65276 | opp_overlap 69380 69381, overlap 69380 69382 69384 AATATGATAAGGAAT TTGCAAA AAG TTTGCAA CTTTTTCTACTTTTT Cj0054c 70153 - 69548 - | putative lysine decarboxylase family protein Cj0055c 71098 - 70274 - | conserved hypothetical protein Cj0055c TERM 94 70975 - 70994 + g 75 -4.4 -5.23765 | overlap 70977 CGGCTACTCCGTGTT TGTTGATT TTAA AATCAATA TTTTTATCTTGTTTA Cj0056c 71571 - 71155 - | hypothetical protein Cj0057 72005 - 72859 + | putative periplasmic protein Cj0058 72844 - 73443 + | putative peptidase C39 family protein fliY 74334 - 73492 - | flagellar motor switch protein FliY fliM 75410 - 74331 - | flagellar motor switch protein FliM fliA 76126 - 75410 - | flagellar biosynthesis sigma factor Cj0062c 76439 - 76083 - | putative integral membrane protein Cj0063c 77324 - 76458 - | putative ATP-binding protein flhF 78771 - 77317 - | flagellar biosynthesis regulator FlhF TERM 95 78561 - 78579 + g 74 -2.4 -5.52909 | GCGAGCTTTTTTTTG CAGGTAAA GAT TTTCCTTG TTTTTTTAAGTGTTC folK 79254 - 78781 - | putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 96 78898 - 78910 + g 73 -5.5 -4.63542 | opp_overlap 78898 AAGATCTAAATCAAG CGTTC TAG GAGCG TTTTTGAAAGTTCTC TERM 97 79239 - 79205 - G 85 -4.5 -5.52384 | gap 1, opp_overlap 79217 79222, overlap 79206 TTTTGACTAAAAAAA GGAAAAAAACGACTTT TTTC AAAGT-GTTTTACTCC TTGAATTTTTAGCAT aroQ 79736 - 79257 - | 3-dehydroquinate dehydratase TERM 98 80341 - 80310 - g 74 -3.2 -5.47159 | opp_overlap 80313 80316, overlap 80313 GTTGAAGATAAAAAA CAAGAATTTTTAAA AAGA TTTGAAAATTCTTT GAAATTTAAAAATGA TERM 99 80313 - 80338 + G 71 -7.1 -3.71649 | opp_overlap 80313 80310, overlap 80316 GAAGATAAAAAACAA GAATTTTTAAA AAGA TTTGAAAATTC TTTGAAATTTAAAAA TERM 100 80338 - 80313 - g 71 -4.9 -4.80737 | opp_overlap 80313 80316, overlap 80310 GAAGATAAAAAACAA GAATTTTTAAA AAGA TTTGAAAATTC TTTGAAATTTAAAAA Cj0067 79827 - 81056 + | chlorohydrolase TERM 101 81932 - 81901 - g 78 -10.4 -2.85621 | overlap 81900 81916 AAGCTTAATCGAAAT CGCTTATAAAACTA ATAG CAGTTTTATAAACG CTAGATAAAATATAT pspA 81044 - 81940 + | protease Cj0069 82019 - 83050 + | hypothetical protein TERM 102 83061 - 83094 + T 100 -9.1 -5.25799 | overlap 83064 CTTAGTCTTTAAGCT TAATGTCCATTTTAT TATT GTAAAATGGACATTC TTTTTCTATTGTTTT TERM 103 83064 - 83091 + T 100 -10.8 -4.65219 | overlap 83061 AGTCTTTAAGCTTAA TGTCCATTTTAT TATT GTAAAATGGACA TTCTTTTTCTATTGT Cj0070c 83205 - 83047 - | hypothetical protein TERM 104 84100 - 84060 - R 93 -9.3 -4.90136 | opp_overlap 84060, overlap 84053 84064 84066 84067 AATTAATATTAAAAA TTAAGACTTACTGATTCTA GTA TAGAATCAGTAAATAATAA TATGTGCAATTTGTG TERM 105 84096 - 84064 - R 88 -10.1 -3.87412 | opp_overlap 84060, overlap 84060 84066 84067 AATATTAAAAATTAA GACTTACTGATTCTA GTA TAGAATCAGTAAATA ATAATATGTGCAATT TERM 106 84094 - 84066 - R 100 -12.7 -3.50111 | opp_overlap 84060, overlap 84064 84060 84067 TATTAAAAATTAAGA CTTACTGATTCTA GTA TAGAATCAGTAAA TAATAATATGTGCAA TERM 107 84093 - 84067 - R 100 -14 -2.68982 | opp_overlap 84060, overlap 84066 84064 84060 ATTAAAAATTAAGAC TTACTGATTCTA GTA TAGAATCAGTAA ATAATAATATGTGCA Cj0073c 84743 - 84087 - | conserved hypothetical protein Cj0073c TERM 108 84414 - 84435 + g 85 -3.9 -5.75599 | gap 1, overlap 84424 AGATCTTAAATTTTC GATTT-CTTT ATC AAAGCAAATC TTTTTTTCTGCTTTG Cj0074c 86175 - 84736 - | putative iron-sulfur protein TERM 109 84903 - 84922 + g 72 -5 -4.8384 | GTGAAAAACGCCATT TATCGCCA TTGG TTGCGATA TTTTTAAATTGTTTA TERM 110 86052 - 86074 + g 71 -2 -5.41143 | overlap 86057 GCCAGTCTTTAAATC TAGCATCAAT AAC ATTGAGTCTA TTTTTTTGCAAAGTA Cj0075c 86912 - 86172 - | putative oxidoreductase iron-sulfur subunit TERM 111 87015 - 86978 - R 78 -6.7 -4.65819 | gap 1, overlap 87004 AAAAGCAAAGTAAAA TTTCTAACAAATATTC TAAAAAC GAATATTTGTT-GAAA TAAAACTTAAATTTT lctP 88718 - 87036 - | L-lactate permease TERM 112 87401 - 87385 - G 78 -3 -5.59962 | gap 1 GAAAAGAAAGAAAAA GCATCAC CTGT GTG-TGC AAAAGCAAGTCCTAA TERM 113 88562 - 88549 - G 76 -6.7 -4.48299 | overlap 88551 TTATAGGCAAATAAA GCTAC TAAA GTAGC AAGTATAACAGTTAA TERM 114 88897 - 88872 - R 100 -8.5 -5.30448 | AAATAAATATAAAAA TAGAACAAGAT AAAA ATCTTATTCTA AAGGGGTAGCAGCTG cdtC 89459 - 88890 - | cytolethal distending toxin C cdtB 90267 - 89470 - | cytolethal distending toxin B cdtA 91070 - 90264 - | cytolethal distending toxin A TERM 115 91142 - 91154 + H 70 -3.5 -5.16681 | TAATTTTCCGCTTTT TAAAA ATG TTTTA TTTTGTTGTTTTTAA TERM 116 91387 - 91376 - g 80 -2.2 -5.72622 | overlap 91379 91380 GCGACAAAGAAAAAA GCAC TTTT GTAC TCAAAAATCTTACAC Cj0080 91147 - 91416 + | putative membrane protein. Functional classification-Membranes, lipoproteins and porins cydA 91417 - 92979 + | cytochrome bd oxidase subunit I cydB 92979 - 94103 + | cytochrome bd oxidase subunit II TERM 117 94273 - 94288 + T 81 -9 -3.7574 | CAAAATATTGCAATT TGCCCA TTTT TGGGCA TCTTTTAATCATAAA Cj0085c 94992 - 94297 - | putative amino acid recemase ung 95803 - 95108 - | uracil-DNA glycosylase TERM 118 95436 - 95414 - G 72 -8.5 -3.30821 | AAGAATAGAATTTAA GAGCAAAAC TCCTT GTTTTGCCC AAGAGCTTAAATCTC TERM 119 96636 - 96624 - g 77 -7.7 -4.09511 | AAGATGTTCTTAAAA TGGGT AGA ACCCA ACTGCAAGATGCTGT TERM 120 97445 - 97422 - g 70 -5.4 -4.62669 | TAAGCAAAGAACAAA TTGATGAAAT TTTA ACTCCATCAA ATATGCTAAATCCTC aspA 96074 - 97480 + | aspartate ammonia-lyase TERM 121 97524 - 97541 + G 77 -5.5 -4.91459 | opp_overlap 97524 TAATTTTGCAAGTAA TCGTCCT TCTT GGGGCGA TTTTTATCGGTATTC TERM 122 98499 - 98513 + G 77 -8.6 -3.54768 | opp_overlap 98474 98472 98498 98496 GGGTTAAACAAACCC CTGCTA TGT TAGCAG TTGCATTTTTCTTTG dcuA 97496 - 98833 + | anaerobic C4-dicarboxylate transporter TERM 123 98862 - 98840 - f 70 -6.3 -4.08485 | opp_overlap 98835 CTTATTTAAATCAAA CCCTAGG TTTTTCTCT CCTAGGG TTAAAATTTTTTCAT Cj0089 98941 - 100302 + | putative lipoprotein Cj0090 100312 - 100680 + | putative lipoprotein Cj0091 100704 - 101327 + | putative lipoprotein TERM 124 101360 - 101380 + F 90 -5.4 -5.77632 | GAATAAAATTTTTTA GCTCAAGT GTTTA GCTTGGGC TTTTTTTATGATTTT TERM 125 101998 - 101981 - g 76 -6.3 -4.64334 | opp_overlap 101981 AATTTCTTAATAAAA CTATGAC AAAT GCCATAG GTTCTATGAGTGGAC Cj0092 101410 - 102747 + | putative periplasmic protein TERM 126 102780 - 102803 + G 73 -9 -3.17229 | overlap 102781 AATTAAAATTCTTTT TTTAGGCTTA TTTT TAAGCCTAAG TCTTAATGCTAAAGT TERM 127 102781 - 102802 + G 78 -10.3 -2.50016 | overlap 102780 ATTAAAATTCTTTTT TTAGGCTTA TTTT TAAGCCTAA GTCTTAATGCTAAAG Cj0093 102757 - 103959 + | putative periplasmic protein TERM 128 103962 - 103993 + F 72 -7.5 -3.72494 | opp_overlap 103962 103961, overlap 103963 103967 TCTAGGCTTTTAAAT TTTTAGAGTTTGA TTTTTC TCAAACTCTAAAC TCTTTCTTAAATTCA TERM 129 103963 - 103992 + F 84 -11 -2.82773 | opp_overlap 103962 103961, overlap 103962 103967 CTAGGCTTTTAAATT TTTAGAGTTTGA TTTTTC TCAAACTCTAAA CTCTTTCTTAAATTC rplU 104118 - 104426 + | 50S ribosomal protein L21 rpmA 104437 - 104691 + | 50S ribosomal protein L27 TERM 130 104723 - 104692 - f 77 -8.8 -3.30771 | opp_overlap 104685 104692 GTATATCCTGCATAA GTTTTTAGGACGCT TTTT AGCGTCTTGAAAAC TTTAAATTTATAAAT TERM 131 104692 - 104723 + F 100 -13.2 -3.89617 | opp_overlap 104692, overlap 104685 GTATATCCTGCATAA GTTTTTAGGACGCT TTTT AGCGTCTTGAAAAC TTTAAATTTATAAAT obgE 104798 - 105850 + | GTPase ObgE TERM 132 105896 - 105838 - f 93 -3.4 -6.25741 | opp_overlap 105848, overlap 105847 105850 105854 AAATAACAAAAAAAA TTTAACAATCTAGGAAGTGTTTTATATT AAA AATTTCAAACACTCCCTATTTTTTCAAA AATAACTAGTTTATA TERM 133 105848 - 105886 + F 90 -7.6 -5.02074 | opp_overlap 105847 105838 105850 105854 AAAAATTTAACAATC TAGGAAGTGTTTTATATT AAA AATTTCAAACACTCCCTA TTTTTTCAAAAATAA TERM 134 106392 - 106406 + G 76 -2.8 -5.52384 | TAATGATAGTTTAAG TGCTTA TGC TACGCA TTTTTTTGATGCGGA proB 105955 - 106710 + | gamma-glutamyl kinase fmt 106784 - 107701 + | methionyl-tRNA formyltransferase birA 107664 - 108317 + | biotin--protein ligase Cj0100 108314 - 109099 + | parA family protein Cj0101 109105 - 109941 + | parB family protein atpF' 110002 - 110427 + | F0F1 ATP synthase subunit B' TERM 135 110658 - 110648 - g 89 -4 -5.89947 | overlap 110637 GAAATTCAAAAAAAA CTTT TAG AAAG TAAAGCTAAGAAATT atpF 110438 - 110950 + | F0F1 ATP synthase subunit B TERM 136 111341 - 111331 - g 82 -4 -5.52096 | opp_overlap 111331, overlap 111324 AAACTTAACAAAAAA TTTG ATG CAAA TATTAAACTAAATAA atpH 110953 - 111474 + | F0F1 ATP synthase subunit delta atpA 111488 - 112993 + | F0F1 ATP synthase subunit alpha TERM 137 113051 - 113039 - g 80 -6.3 -4.88326 | AAAGAAAAATTAAAA GTGTT CAT AACAC TCAAAAGACTACAAA atpG 113002 - 113886 + | F0F1 ATP synthase subunit gamma atpD 113912 - 115309 + | F0F1 ATP synthase subunit beta TERM 138 115621 - 115606 - g 82 -4 -5.50499 | overlap 115608 TGAGATTGAAAAAAA TCTTGC TCAA GCAAAA GATTTGATTAAATCT atpC 115313 - 115702 + | F0F1 ATP synthase subunit epsilon exbB3 115702 - 116256 + | putative MotA/TolQ/ExbB proton channel family protein exbD3 116265 - 116654 + | putative exbD/tolR family transport protein TERM 139 116933 - 116922 - g 72 -4.4 -5.03227 | AGACTACAAATAAAA CAGT TAAA ACTG AAGATATTGACCAAA Cj0111 116657 - 117436 + | putative periplasmic protein TERM 140 117472 - 117447 - g 88 -4.3 -5.67967 | gap 1, opp_overlap 117447 117448, overlap 117448 ATTAGGAGAAAAAAA TGAAAAAAATTG TAG CAATTTTTTT-A GTCTTTTTAGGAAGT tolB 117446 - 118654 + | translocation protein TolB pal 118731 - 119228 + | peptidoglycan associated lipoprotein (omp18) TERM 141 119250 - 119269 + G 83 -8.6 -4.13995 | opp_overlap 119246 119253 AAAAAAATATTCACA GTAGCTCT TCTT GGAGCTAC TTTACTTTATGCAGA TERM 142 119897 - 119876 - g 75 -5.9 -4.84761 | AGATGTTGATAAAAA TGCTTTTGA AGAT TCCAAAGCA AAATTAAATTTTCTC Cj0114 119232 - 120179 + | putative periplasmic protein slyD 120194 - 120763 + | FKBP-type peptidyl-prolyl cis-trans isomerase TERM 143 121271 - 121285 + G 71 -8.6 -2.74799 | overlap 121270 121273 GACAAATCGTTGTAG CAGGTT TAA AACCTG ATTTAGCAAGTTATG fabD 120763 - 121683 + | malonyl CoA-acyl carrier protein transacylase pfs 121680 - 122369 + | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase Cj0118 122366 - 123121 + | conserved hypothetical protein Cj0118 Cj0119 123126 - 123647 + | putative hydrolase Cj0120 123647 - 124261 + | hypothetical protein Cj0121 124258 - 124665 + | putative metalloprotease Cj0122 124789 - 125478 + | hypothetical protein Cj0123c 126429 - 125503 - | putative tRNA-dihydrouridine synthase TERM 144 125786 - 125798 + g 74 -6.3 -4.44461 | CCTATCATGAGTCCA TCACA TTT TGTGA TTTTATAAACTTCTT TERM 145 126388 - 126368 - G 81 -8.3 -4.33675 | ACTACATTACGAAAA GGCAGATCT GAA AAACCTGCC ATAGGGGCTAAAAAC Cj0124c 127412 - 126426 - | hypothetical protein TERM 146 126913 - 126927 + g 85 -3.6 -5.79588 | TAGGCATAATTTGCA TCATTT TTG AGATGA TTTTTTTCATTTTGC Cj0125c 127764 - 127402 - | hypothetical protein TERM 147 127737 - 127753 + g 89 -3.8 -6.07969 | CTTCTAAAATATTTT TGAAAT TTTGT ATTTCA TTTTTTTTCATTTTA Cj0126c 128237 - 127776 - | conserved hypothetical protein Cj0126c accD 129069 - 128227 - | acetyl-CoA carboxylase subunit beta TERM 148 128775 - 128790 + g 71 -3.2 -5.28826 | overlap 128777 TACCTGTTTTACTTT CACCTT CGCT AAGGCG TTTTTTATAGGATTT Cj0128c 129800 - 129078 - | putative inositol monophosphatase family protein Cj0129c 132019 - 129800 - | outer membrane protein tyrA 132096 - 132923 + | prephenate dehydrogenase Cj0131 133003 - 134376 + | putative peptidase M23 family protein lpxC 134376 - 135260 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Cj0133 135299 - 135700 + | putative glycoprotease family protein TERM 149 136454 - 136467 + G 91 -4.5 -5.96894 | TGAGCACACTTTCAG GTTCG GGAT CGAGC TTTTTTTCTTTAGCT thrB 135709 - 136587 + | homoserine kinase Cj0135 136612 - 136869 + | conserved hypothetical protein Cj0135 TERM 150 136967 - 136953 - g 88 -8.6 -4.41494 | GACTTGGAATTAAAA CAGCAT CAA ATGCTG TAGAACCTGAGATTG infB 136856 - 139471 + | translation initiation factor IF-2 TERM 151 139618 - 139632 + G 73 -3.6 -5.28683 | overlap 139620 TACGATGCTTTTGTG TATCTT GAT AAGATG TTTTTTAATGTTCAT rbfA 139468 - 139830 + | ribosome-binding factor A Cj0138 139820 - 140242 + | conserved hypothetical protein Cj0138 TERM 152 140766 - 140782 + G 71 -6.7 -3.97308 | opp_overlap 140761, overlap 140761 140759 ATAGTTAATATTTTT TCTAAAA ATG TTTTAGA TTTAATATCTTTAAA TERM 153 140854 - 140841 - g 76 -2.5 -5.51046 | CAAATACATAAAAAA TTATT AGAG AATAA AAATTTATCATTAGT TERM 154 141665 - 141644 - g 77 -8.9 -3.57615 | opp_overlap 141648 141661, overlap 141648 141657 TCAAGATTTTTTAAA TAAAGGAAA TGAA TTTCCTTTA GAAAATAAAGTTAGT Cj0139 140289 - 142640 + | putative endonuclease TERM 155 142706 - 142694 - g 71 -4.9 -4.71418 | AAGATTTAAAAGAAA TTTTC AAA GAAAA GGCCGAAGGGTTTTA TERM 156 142892 - 142879 - g 79 -5.3 -5.29782 | GATAGTTATAAAAAA GAAGA TAGT TCTTC AAATCATGACAAAGA Cj0140 142633 - 143964 + | hypothetical protein Cj0141c 144756 - 143953 - | putative ABC transporter integral membrane protein TERM 157 144667 - 144651 - G 78 -4.4 -5.38047 | CAGCCATAGAAAAAA GGCGAT TTATC ATCACC AAAGTGCCTATGATC TERM 158 144768 - 144790 + r 86 -6.5 -5.20154 | overlap 144759 GCATTATTTTCCTTT GAAAATTTT AAACA AAAATTTTC TTTTTTAAATTCTGT Cj0142c 145603 - 144749 - | putative ABC transporter ATP-binding protein TERM 159 145225 - 145237 + g 71 -4.9 -4.7629 | TTAAAGAATCAATGG TTTTG TTC CAAAA TTTTTCCATTCCTAC Cj0143c 146506 - 145616 - | putative periplasmic solute binding protein for ABC transport system TERM 160 145804 - 145815 + g 70 -4.4 -4.93547 | GAGTGATAAGTTTTT GCAA ATCT TTGC TTTTTGGTTCCTTAC TERM 161 148118 - 148103 - g 72 -6.2 -4.28049 | GTTAAAATGCTAAAA CAAAGT TCAG ACTTTG CTAATGCTTTAGCTA Cj0144 146705 - 148684 + | putative methyl-accepting chemotaxis signal transduction protein TERM 162 148720 - 148692 - f 88 -12 -2.84098 | opp_overlap 148692, overlap 148689 GGTTTTAATTAATCA TTTATACCTAGT GAAAA ACTAGGTATAAA TTTTTTCTTCAATTT TERM 163 148692 - 148720 + F 100 -12 -5.52096 | opp_overlap 148692 148689 GGTTTTAATTAATCA TTTATACCTAGT GAAAA ACTAGGTATAAA TTTTTTCTTCAATTT Cj0145 148819 - 150600 + | putative TAT (Twin-Arginine Translocation) pathway signal sequence domain protein TERM 164 150630 - 150608 - T 100 -12.2 -5.33026 | opp_overlap 150612 GAAGCTAAATAAAAA TAAAGTTGCT TTT AGCAACTTTA TAAAATCTTAATGCA TERM 165 150612 - 150626 + T 82 -8.6 -3.92602 | opp_overlap 150608 CTAAATAAAAATAAA GTTGCT TTT AGCAAC TTTATAAAATCTTAA trxB 151576 - 150638 - | thioredoxin reductase TERM 166 151703 - 151687 - R 93 -10.9 -3.95725 | opp_overlap 151687 AATTTTTAAGAAGAA GGCTAGT TAT ACTAGCC TTTAGTTTATAGTAA TERM 167 151687 - 151703 + r 93 -10.9 -4.16182 | opp_overlap 151687 AATTTTTAAGAAGAA GGCTAGT TAT ACTAGCC TTTAGTTTATAGTAA trxA 152024 - 151710 - | thioredoxin Cj0148c 152419 - 152081 - | hypothetical protein hom 153666 - 152419 - | homoserine dehydrogenase TERM 168 153386 - 153399 + g 85 -2.3 -6.04324 | AGCATAGCTTTATTT GCAGT AACA ACAGC TTTTTTCTTTTTTAA Cj0150c 154872 - 153670 - | aspartate aminotransferase TERM 169 154167 - 154193 + g 76 -6.6 -4.49311 | overlap 154169 CCGCTACATCTTTTG CGCCTTCAATTT CCA AAATAGAAGGAG TTTTATAGTCATCAT TERM 170 154406 - 154393 - G 70 -3.9 -5.07107 | opp_overlap 154385 TAAATTTTCAAAAAA TTGAT TTTC ATCAA GCTCAAATTTTTCAT Cj0151c 155690 - 154884 - | putative periplasmic protein Cj0152c 156622 - 155684 - | hypothetical protein Cj0153c 157298 - 156615 - | putative rRNA methylase TERM 171 157144 - 157181 + g 70 -5.9 -4.28049 | gap 1, opp_overlap 157156, overlap 157145 TTCGCATAAGCTTGA GCA-GTTTTAAAATCAAG TTT TTTGATTTTAAAACCTGA TTTTGCGATTTTGGA TERM 172 157145 - 157180 + g 76 -9.4 -3.16106 | gap 1, opp_overlap 157156, overlap 157144 TCGCATAAGCTTGAG CA-GTTTTAAAATCAAG TTT TTTGATTTTAAAACCTG ATTTTGCGATTTTGG Cj0154c 158136 - 157312 - | putative tetrapyrrole methylase family protein rpmE 158339 - 158139 - | 50S ribosomal protein L31 Cj0156c 159074 - 158418 - | 16S rRNA m3U1498 methyltransferase Cj0157c 159483 - 159076 - | putative integral membrane protein TERM 173 159221 - 159210 - G 70 -4.4 -4.88295 | AAACAAAGTGAAAAA TTGC TAAG GCAA AAATTAAGATCCAAG Cj0158c 159908 - 159483 - | putative haem-binding lipoprotein Cj0159c 160489 - 159908 - | putative 6-pyruvoyl tetrahydropterin synthase Cj0160c 161229 - 160486 - | putative radical SAM domain protein moaA 162194 - 161232 - | molybdenum cofactor biosynthesis protein A TERM 174 161800 - 161813 + g 74 -3.1 -5.34555 | AATACATCTTTTTGC GCAAG AGTT TTTGC TTTTTTGTGATCTAG Cj0162c 162722 - 162207 - | putative periplasmic protein Cj0163c 163216 - 162719 - | hypothetical protein TERM 175 162932 - 162912 - G 72 -7.7 -3.63744 | overlap 162910 TCTTCTTCTAAAATA GTATCCAAA AAA TTTAGATAC TCAAAATTTAAAGAT TERM 176 163045 - 163018 - G 75 -7.2 -4.14392 | overlap 163003 163020 163039 TTTCAAGTCTTAAAA TATCTTCTTTTA GACT TAAAAGAAGATC AAAAATAATTTTTTC TERM 177 163043 - 163020 - G 83 -9.8 -3.67 | overlap 163003 163018 163039 TCAAGTCTTAAAATA TCTTCTTTTA GACT TAAAAGAAGA TCAAAAATAATTTTT ubiA 164091 - 163207 - | prenyltransferase TERM 178 164421 - 164408 - g 74 -5.3 -4.9181 | opp_overlap 164408 AGAGAATATCAAAAA GCAAA AGAA TTTGC TTTAGCTAGAAATTT miaA 164162 - 165031 + | tRNA delta(2)-isopentenylpyrophosphate transferase Cj0167c 165580 - 165017 - | putative integral membrane protein TERM 179 165933 - 165892 - R 75 -8.3 -3.41745 | gap 1, opp_overlap 165889 165888 165907, overlap 165894 165907 TTTGTAGAATACGAA TAGCTTTTGATATAAGTCTA TTA TAGACTTATATCAAG-GCTG GGCATTATTGAGCTG TERM 180 165931 - 165894 - R 85 -10.9 -3.27771 | gap 1, opp_overlap 165889 165888 165907, overlap 165892 165907 TGTAGAATACGAATA GCTTTTGATATAAGTCTA TTA TAGACTTATATCAAG-GC TGGGCATTATTGAGC Cj0168c 166105 - 165938 - | putative periplasmic protein TERM 181 166213 - 166200 - H 71 -2.5 -5.46629 | opp_overlap 166200, overlap 166187 AATATTTCAAAAAAA TATAA TTTT TTATA TATATTTAAATTATT sodB 166373 - 167035 + | superoxide dismutase (Fe) Cj0170 167050 - 167794 + | hypothetical protein TERM 182 167810 - 167791 - T 93 -10.8 -4.53163 | opp_overlap 167791 167795 TTATATAGGACAAAA GTAAGTGC TCTA GCACTTAC TCTCCTAAGCTTGGA TERM 183 167791 - 167810 + T 82 -10.8 -2.80994 | opp_overlap 167791, overlap 167795 TTATATAGGACAAAA GTAAGTGC TCTA GCACTTAC TCTCCTAAGCTTGGA Cj0172c 169012 - 167807 - | putative saccharopine dehydrogenase TERM 184 169073 - 169061 - R 74 -4.9 -5.01042 | opp_overlap 169032 169031 AATTTAAACTAAAAA TTGAT AAT ATCAA AACTTATTTTCTCTT cfbpC 169962 - 169054 - | putative iron-uptake ABC transport system ATP-binding protein TERM 185 169138 - 169125 - G 100 -2.5 -6.34616 | opp_overlap 169128 CCAAAATAAAAAAAA TTATA TTTT TATAA AGTAATTTTAGCCTA cfbpB 171562 - 169946 - | putative iron-uptake ABC transport system permease protein TERM 186 170097 - 170073 - G 70 -6.5 -4.13654 | opp_overlap 170074, overlap 170069 170089 CTTGCAAACCAGAAA GCTTTAACACT TAA AGTTTCAAAGC CAAAAGGCGCTAAAA TERM 187 170406 - 170395 - G 71 -2.2 -5.36364 | CCAAAAATACAAAAA GCAC TATA ATGC TAATCCCTAAAGCAG TERM 188 170508 - 170478 - G 83 -3.4 -5.77856 | overlap 170469 AATAAATTAAAAAAA TGATTTTTAACTAT CCT AGAGCTAAACATCA AAAAATAAGCTAAAA TERM 189 171531 - 171514 - G 84 -7 -5.24551 | GTAAAGCAAGAAAAA GGGCAA GTAAAA TTGCCC CGAGTTTATAGTATT cfbpA 172566 - 171562 - | putative iron-uptake ABC transport system,periplasmic iron-binding protein Cj0176c 172694 - 172563 - | putative lipoprotein Cj0177 172916 - 173767 + | putative iron transport protein TERM 190 175297 - 175285 - g 76 -7.7 -3.96497 | overlap 175282 TTAAAACCAGAACAA GCCAA TAC TTGGC AAATAGGTTTTAATT Cj0178 173764 - 176031 + | putative TonB-denpendent outer membrane receptor TERM 191 176047 - 176062 + G 78 -3.4 -5.64328 | GGAATATACAAATGT TAAAAA AATG TTTTTA TTTTGTTTTTTTATT TERM 192 176523 - 176536 + G 85 -8.1 -4.41844 | opp_overlap 176523, overlap 176535 TTGCTTGCGAGCATA GGTGC TAGC GCACC TTTTATAGGGCTTTT exbB1 176043 - 176804 + | biopolymer transport protein exbD1 176791 - 177201 + | biopolymer transport protein tonB1 177203 - 177949 + | TonB transport protein TERM 193 177971 - 177947 - f 81 -5.2 -5.09895 | TATTTAGGTAAAAAA TAAACTTTTC ATTAA AAAAAGTTTA TTAGAATTTTTATTT TERM 194 178843 - 178819 - g 90 -10.1 -3.96842 | opp_overlap 178826 178835, overlap 178826 ACTTGAATATAACAA TCAAAAAGCTG AAG CAGCTTTTAGA AAAGAGCTTGTTTAT TERM 195 178836 - 178826 - g 83 -6.8 -5.01845 | opp_overlap 178826 178835, overlap 178819 TATAACAATCAAAAA GCTG AAG CAGC TTTTAGAAAAGAGCT TERM 196 178826 - 178836 + G 72 -6.8 -4.07687 | opp_overlap 178819 178826, overlap 178835 TATAACAATCAAAAA GCTG AAG CAGC TTTTAGAAAAGAGCT Cj0182 177995 - 179200 + | putative transporter Cj0183 179299 - 180657 + | putative integral membrane protein with haemolysin domain TERM 197 180655 - 180672 + T 100 -8.5 -4.97405 | opp_overlap 180655 180658 AATAAAGATGAAGAA TAAGCCT CTTT AGGCTTA TTTCTTTTTGTAAAT TERM 198 180672 - 180655 - T 82 -8.5 -3.88641 | opp_overlap 180655, overlap 180658 AATAAAGATGAAGAA TAAGCCT CTTT AGGCTTA TTTCTTTTTGTAAAT Cj0184c 181856 - 180702 - | putative serine/threonine protein phosphatase TERM 199 181491 - 181509 + g 91 -5.4 -5.80364 | overlap 181493 AATGATATATCCATT TTTTTTAG CTT CTAAAAGA TTTTTTTCTTGACAT TERM 200 181658 - 181688 + g 73 -9.3 -2.55019 | gap 1, opp_overlap 181661 181662, overlap 181657 181661 181662 GCATACGCATTTCTA GAAG-TTTGAGTAA AATT TTACTCAAATCTTC ATCATTTTTAACATT TERM 201 181662 - 181683 + g 74 -8.9 -3.26718 | opp_overlap 181661 181662, overlap 181661 181658 181657 ACGCATTTCTAGAAG TTTGAGTAA AATT TTACTCAAA TCTTCATCATTTTTA TERM 202 181683 - 181662 - G 70 -8.9 -2.58663 | opp_overlap 181662 181661 181658 181657, overlap 181661 ACGCATTTCTAGAAG TTTGAGTAA AATT TTACTCAAA TCTTCATCATTTTTA Cj0185c 182075 - 181866 - | putative phnA domain protein Cj0186c 182787 - 182068 - | putative TerC family integral membrane protein purN 183425 - 182859 - | phosphoribosylglycinamide formyltransferase TERM 203 183325 - 183346 + g 74 -2.3 -5.63504 | opp_overlap 183320, overlap 183320 183326 AGGCAAAGTACTATT TCATAGG TATTTTCC CCTATGG TTTTTTTATGAAGTT Cj0188c 184786 - 183416 - | putative kinase TERM 204 183717 - 183701 - G 72 -6.7 -4.10007 | ATAATTTTGTGAAAA TTTTCTA GCA TAGAAAA AGCGATTTTTTTGCA Cj0189c 185468 - 184770 - | conserved hypothetical protein Cj0189c Cj0190c 186975 - 185470 - | conserved hypothetical protein Cj0190c def 187499 - 186972 - | peptide deformylase TERM 205 187512 - 187545 + r 100 -11.3 -5.00884 | opp_overlap 187520 CATTAAAAAACCTTT GTTTTAAATGATCTC CAAA GAAATCATTTAAAAC TTTTTTCCAAAACCT clpP 188119 - 187535 - | ATP-dependent Clp protease proteolytic subunit TERM 206 187835 - 187820 - G 74 -5.4 -4.9445 | ACAACTAAGCAAAAA TGCTCC CATA GAAGCA GCTTGTCCTATACAA tig 189453 - 188119 - | trigger factor TERM 207 188595 - 188608 + g 70 -3.9 -5.02715 | CATCATTTACAAGTT TGAAA AGTT TTTCA TTTTTGATTTGCTCT TERM 208 189497 - 189477 - H 77 -4.7 -5.18371 | opp_overlap 189477, overlap 189472 CCTTATAAAATAAAA TTTGCCTTC AAT GATAGCAAA TTTTTCCTTATTACT folE 189596 - 190168 + | GTP cyclohydrolase I fliI 190168 - 191553 + | flagellum-specific ATP synthase purF 192893 - 191556 - | amidophosphoribosyltransferase TERM 209 192064 - 192080 + g 70 -3.7 -5.08824 | opp_overlap 192064 192063, overlap 192053 192066 ACAGGCACGACAAAG TCTGCTT TAT AAGCAAA TTTTTTAGCTAAAGC TERM 210 192845 - 192833 - G 75 -5.5 -4.8048 | GTTGCATAGCAAAAA GCGCA TAA TACGC ATAAGTGCTAGCATT dapB 193623 - 192895 - | dihydrodipicolinate reductase Cj0198c 194867 - 193686 - | recombination factor protein RarA TERM 211 194699 - 194722 + g 85 -8.3 -4.40561 | opp_overlap 194691 194698 194712, overlap 194708 AATCTAAGCCAAATT CTTTTGCTA CAACTC TAGCAAAAG TTGTTTTTCCAGAAC Cj0199c 195988 - 194867 - | putative periplasmic protein TERM 212 195827 - 195838 + g 72 -4.4 -5.05782 | AAAACTTCCTTTAGA GGTT AAAA AACC TTTTTTGAAGTAAAT TERM 213 196126 - 196092 - R 73 -8.8 -2.93073 | opp_overlap 196096 196102, overlap 196102 TTTGCCGAAGAATGA TTTTTATAAATCCCTT GTT AAGGGATTTATATTAA TAAGCTTTTTTATAA TERM 214 196096 - 196122 + r 100 -14 -3.23611 | opp_overlap 196092 196102, overlap 196102 CCGAAGAATGATTTT TATAAATCCCTT GTT AAGGGATTTATA TTAATAAGCTTTTTT TERM 215 196116 - 196102 - R 82 -8.6 -3.88559 | opp_overlap 196102 196096, overlap 196092 AATGATTTTTATAAA TCCCTT GTT AAGGGA TTTATATTAATAAGC TERM 216 196102 - 196116 + r 85 -8.6 -4.23674 | opp_overlap 196092 196102, overlap 196096 AATGATTTTTATAAA TCCCTT GTT AAGGGA TTTATATTAATAAGC Cj0200c 196470 - 196123 - | putative periplasmic protein Cj0201c 197139 - 196534 - | putative integral membrane protein Cj0202c 197464 - 197123 - | hypothetical protein TERM 217 197560 - 197572 + H 83 -3.5 -5.97979 | opp_overlap 197560, overlap 197552 ATAATTATAGCAAAA TAATT CAA AATTA TTTTTTTATTCTTGT Cj0203 197707 - 199053 + | putative citrate transporter TERM 218 199080 - 199096 + F 70 -5.2 -4.62069 | overlap 199071 GAACTTTTGATTTTT CAATGA TTGGT TCATTG TTTTATGATATTTTT TERM 219 200167 - 200190 + G 74 -6.2 -4.37527 | opp_overlap 200173, overlap 200173 ATATAGACCTTTCTT TAAAAAGTAT TTTT ATACTTTTTG TTTTAATGGTTGTGG TERM 220 200173 - 200184 + G 78 -3 -5.50723 | opp_overlap 200173, overlap 200167 ACCTTTCTTTAAAAA GTAT TTTT ATAC TTTTTGTTTTAATGG Cj0204 199236 - 201233 + | putative oligopeptide transporter, OPT family TERM 221 201238 - 201253 + F 81 -9 -3.80858 | overlap 201240 AAGATGCTTAATTTT TGGGGT TAAA ACCCCA TTTAATCCATTCTGA uppP 201307 - 202110 + | undecaprenyl-diphosphatase TERM 222 202220 - 202204 - f 74 -7.3 -3.9398 | TTAGAACTTTATAAA CACTCAC AGG GTAAGTG AGCGACAAAGGGTTA TERM 223 203100 - 203086 - g 70 -3.6 -5.06089 | overlap 203088 AAACTATAAAGAAAA TATGTA TTT TACACA AATTGATGAACAAGA TERM 224 203665 - 203651 - g 85 -2.8 -5.98781 | opp_overlap 203663 GATAATGAAAAAAAA CAACCT GTA ATGTTG CATCGTGCGATTTTA thrS 202241 - 204049 + | threonyl-tRNA synthetase TERM 225 204433 - 204455 + G 76 -7.6 -3.90291 | opp_overlap 204432 AAAGGACGTGAAATG GCAACTCCTG AAG CAGGTGTAGC TTTGCTTGAAAAAAT infC 204046 - 204564 + | translation initiation factor IF-3 TERM 226 204550 - 204593 + F 83 -8.2 -4.4267 | opp_overlap 204559, overlap 204559 204586 AATATGCTTGTAACT CCAAAAAAAGCTTAATCCAC TTTT GTGGATAAAGCTTTTAAAGG TTTTAAATTTTGAAA TERM 227 204584 - 204559 - f 100 -10.5 -5.47399 | opp_overlap 204550 204559 GTAACTCCAAAAAAA GCTTAATCCAC TTTT GTGGATAAAGC TTTTAAAGGTTTTAA TERM 228 204559 - 204584 + F 93 -10.5 -4.19276 | opp_overlap 204559, overlap 204550 GTAACTCCAAAAAAA GCTTAATCCAC TTTT GTGGATAAAGC TTTTAAAGGTTTTAA Cj0208 204603 - 205694 + | putative DNA modification methylase (adenine-specific methyltransferase) TERM 229 205823 - 205837 + F 75 -7.2 -4.12188 | GATCCAAAGTTATTT TCAAGA ATA TCTTGA TTTTGCCAGTAATAA TERM 230 208321 - 208341 + F 75 -7.7 -4.08216 | TACCCCAAATGTTGT TTTTTCTCA TAA TGAGGAAAA TTTTGCCCAGAGTGG TERM 231 208605 - 208591 - f 72 -7.2 -3.69449 | overlap 208589 TAATAGTGGAAAATA CTTTGA AAT TCAAAG CGGACATGATAAATT TERM 232 209187 - 209222 + F 76 -3.6 -5.46706 | opp_overlap 209212, overlap 209212 AATGCTAATTTAAGA TATAGTTTTTAAATAA AAAA TAATTTAAAAATTGTA TTTTTATTTTAAGCT argC 209279 - 210307 + | N-acetyl-gamma-glutamyl-phosphate reductase TERM 233 210575 - 210565 - g 71 -2.4 -5.40625 | AGATCATAGAAAAAA GGGC ATA GCGC ACGAGATGGCAAAAT Cj0225 210317 - 210763 + | putative acetyltransferase argB 210767 - 211612 + | acetylglutamate kinase TERM 234 211870 - 211852 - g 71 -6 -4.51777 | opp_overlap 211851, overlap 211854 ATATTATAATGAAAA TATAGCTG CTG CAGCTAAA AATTTAGCCAAAGCT TERM 235 211868 - 211854 - g 80 -8.6 -3.85899 | opp_overlap 211851, overlap 211852 ATTATAATGAAAATA TAGCTG CTG CAGCTA AAAATTTAGCCAAAG argD 211616 - 212803 + | putative acetylornithine/succinyldiaminopimelate aminotransferase pcm 213451 - 212822 - | protein-L-isoaspartate O-methyltransferase Cj0229 213540 - 214088 + | putative acetyltransferase Cj0230c 215430 - 214057 - | nicotinate phosphoribosyltransferase TERM 236 214208 - 214223 + g 88 -4 -5.72622 | opp_overlap 214208 ATAGTATTTAAAGAT GACTTT TTAA GAAGTC TTTTTTCTTTGTAGA nrdF 216439 - 215417 - | ribonucleotide-diphosphate reductase subunit beta TERM 237 216414 - 216426 + g 72 -2.7 -5.34381 | GTTTCGTTTGAACTT GGATT GTA AATTC TTTTTCTTTGCATTT Cj0232c 216863 - 216453 - | putative integral membrane protein TERM 238 216696 - 216680 - G 76 -3.7 -5.40072 | overlap 216682 TTTTTGTTAAAAAAA TAGCTTG AAT CAAACCA AATAAAAAAGTACAT pyrE 217472 - 216864 - | orotate phosphoribosyltransferase frr 218038 - 217475 - | ribosome recycling factor secG 218419 - 218048 - | preprotein translocase subunit SecG TERM 239 218490 - 218527 + r 87 -11.5 -2.74999 | opp_overlap 218495, overlap 218495 AAAGTTTTGAAACTT GAAAAGTTTTTGTGAGA AAAA TCCCACAAAAACTTATC TGCTATTGAAGCTTC TERM 240 218522 - 218495 - R 100 -12.2 -4.24002 | opp_overlap 218490 218495 TTTGAAACTTGAAAA GTTTTTGTGAGA AAAA TCCCACAAAAAC TTATCTGCTATTGAA TERM 241 218495 - 218522 + r 84 -10 -3.60348 | opp_overlap 218495, overlap 218490 TTTGAAACTTGAAAA GTTTTTGTGAGA AAAA TCCCACAAAAAC TTATCTGCTATTGAA Cj0236c 219218 - 218523 - | putative integral membrane protein TERM 242 218602 - 218591 - G 70 -5.8 -4.3341 | opp_overlap 218590 CAAAATCAAGATAAA GTGC TACT GCAC CTTCGATTGGAGTTT TERM 243 218694 - 218673 - G 71 -5.9 -4.43392 | opp_overlap 218686, overlap 218693 GTAAAATGAAAATAA TATTGCAGC TACT GCTGAAATA GCTAGATTAACTATA cynT 219378 - 220013 + | carbonic anyhydrase Cj0238 220010 - 221893 + | putative mechanosensitive ion channel family protein TERM 244 221919 - 221883 - T 90 -11.9 -3.24414 | opp_overlap 221891, overlap 221884 221891 ATTTGCAAGCAAAAG CTATAAAATAGCAAGAT TTT ATCTTGCTATTTTTTAA ACCGGCATAACGCGT TERM 245 221918 - 221884 - T 100 -13.2 -2.54166 | opp_overlap 221891, overlap 221883 221891 TTTGCAAGCAAAAGC TATAAAATAGCAAGAT TTT ATCTTGCTATTTTTTA AACCGGCATAACGCG TERM 246 221911 - 221891 - T 95 -11.3 -4.54477 | opp_overlap 221891, overlap 221884 221883 GCAAAAGCTATAAAA TAGCAAGAT TTT ATCTTGCTA TTTTTTAAACCGGCA TERM 247 221891 - 221911 + T 100 -11.3 -5.00616 | opp_overlap 221891 221884 221883 GCAAAAGCTATAAAA TAGCAAGAT TTT ATCTTGCTA TTTTTTAAACCGGCA Cj0239c 222887 - 221916 - | NifU protein homolog iscS 224078 - 222897 - | cysteine desulfurase (NifS protein homolog) TERM 248 224095 - 224117 + r 71 -2.9 -5.61913 | gap 1 TTAAAATCCTTAATT TATCCTTAAT TTTA ATTA-GGATA TTTTTTATCTTTATT Cj0241c 224657 - 224256 - | putative iron-binding protein TERM 249 224608 - 224622 + g 71 -7.2 -3.8186 | overlap 224605 AGTTCTTTATGTTGA TGATCT AAA AGATCA TTATTCATTGAAATA Cj0243c 225960 - 224794 - | hypothetical protein TERM 250 226271 - 226259 - g 71 -7.7 -3.43773 | overlap 226257 TCGCACAGCTAAATA TGTGC ATA GCACA AATGTAAAAGCTGTT rpmI 226116 - 226307 + | 50s ribosomal protein L35 TERM 251 226740 - 226726 - g 89 -8.6 -4.56597 | CTGCTTTTGCAAAAA TTGCAG AGG CTGCAA AAAAAGCACTTTGAT rplT 226401 - 226754 + | 50S ribosomal protein L20 TERM 252 226764 - 226801 + T 100 -8.7 -5.1615 | opp_overlap 226768 226771, overlap 226756 226765 226768 CTTTGATTTTTTAGT ATAAGAATTTCAAGATT TTTG ATTCTTGAAATTCTTAA TTTTTTCAGTATTGA TERM 253 226765 - 226800 + T 95 -12.2 -3.68606 | opp_overlap 226768 226771, overlap 226756 226764 226768 TTTGATTTTTTAGTA TAAGAATTTCAAGATT TTTG ATTCTTGAAATTCTTA ATTTTTTCAGTATTG TERM 254 226768 - 226797 + T 86 -9.5 -3.94773 | opp_overlap 226768 226771, overlap 226756 226765 226764 GATTTTTTAGTATAA GAATTTCAAGATT TTTG ATTCTTGAAATTC TTAATTTTTTCAGTA TERM 255 226797 - 226768 - T 80 -9.5 -3.4072 | opp_overlap 226756 226768 226765 226764, overlap 226771 GATTTTTTAGTATAA GAATTTCAAGATT TTTG ATTCTTGAAATTC TTAATTTTTTCAGTA Cj0246c 227934 - 226807 - | putative MCP-domain signal transduction protein TERM 256 227779 - 227797 + g 71 -3.2 -5.20328 | TTTTTCATAATCTTT TTTTATAG CTT CAATAAAA TTTGTTTTTTTAAGC Cj0247c 228443 - 227910 - | hypothetical protein Cj0248 228946 - 229803 + | hypothetical protein TERM 257 229805 - 229821 + F 82 -10.9 -2.62024 | opp_overlap 229805, overlap 229801 ACAAAGAAGATTAAA GAGCCTT TTT AAGGCTC TAAATTGTAGTGATG TERM 258 229821 - 229805 - f 93 -10.9 -4.05319 | opp_overlap 229805 229801 ACAAAGAAGATTAAA GAGCCTT TTT AAGGCTC TAAATTGTAGTGATG Cj0249 229831 - 230310 + | hypothetical protein Cj0250c 231589 - 230279 - | putative MFS (Major Facilitator Superfamily) transport protein Cj0251c 231747 - 231592 - | highly acidic protein moaC 231840 - 232313 + | molybdenum cofactor biosynthesis protein C Cj0253 232291 - 232554 + | hypothetical protein TERM 259 232904 - 232888 - g 76 -6.7 -4.43392 | overlap 232879 232885 TGAAAATCAAAAGAA TTTGATT AAA AATCAAA TCAGCGATAATTTTT TERM 260 232930 - 232950 + G 70 -4.1 -4.92783 | overlap 232937 TTTTTTTGAATTCGA GAATATTTT ACA AGAATGTTC TTTTTGTGATGAATT Cj0254 232544 - 233704 + | hypothetical protein TERM 261 233725 - 233702 - T 100 -11.2 -5.03747 | opp_overlap 233700 233705 233719 AAATTCGTTAAAAAA TAATATCCCA TTTT TGGGATATTA AATATCTATTTCTAT TERM 262 233705 - 233722 + T 73 -8.5 -3.20326 | opp_overlap 233702, overlap 233700 233719 TTCGTTAAAAAATAA TATCCCA TTTT TGGGATA TTAAATATCTATTTC exoA 234481 - 233723 - | exodeoxyribonuclease TERM 263 234572 - 234558 - H 70 -2.2 -5.47821 | ATCCATTTAAAAAAA TTCAAT AAA ATTAAA AGCTTAAATTTGAAG TERM 264 234767 - 234778 + G 71 -3 -5.19261 | GTGATTTGCTCTTTG CTTT TTAT AAAG TTTTTTACTAAATTT TERM 265 235631 - 235619 - g 73 -3.5 -5.27335 | CCTTTTAAAGAAAAA TTAAA TCA TTTAA GTGATCAAAATATAA Cj0256 234599 - 236137 + | putative sulfatase family protein TERM 266 236437 - 236449 + G 71 -3.3 -5.27938 | GCAGTGTTTTTTAGT GTGCT TTT AGCTC TTTTTGTTTGGGGCT dgkA 236134 - 236490 + | diacylglycerol kinase TERM 267 236690 - 236670 - g 93 -4.1 -6.17268 | opp_overlap 236671, overlap 236671 TTAGAAGAAAAAAAA CTTTTTAAG CGT CTTAAAAAT GGATTTTATCAGCTA TERM 268 236689 - 236671 - g 79 -7.6 -4.27921 | opp_overlap 236671, overlap 236670 TAGAAGAAAAAAAAC TTTTTAAG CGT CTTAAAAA TGGATTTTATCAGCT Cj0258 236487 - 236732 + | putative bacterial regulatory protein, ArsR family pyrC 236722 - 237729 + | dihydroorotase TERM 269 237723 - 237759 + T 71 -5.9 -4.41348 | opp_overlap 237724 237726, overlap 237730 GAAATTTCAATTAAA ACATTGATTTTCCACCT TAA AGGTGGAAAATTTAAGC TTTATTTACAAGAGC TERM 270 237758 - 237724 - T 78 -7.2 -4.43911 | opp_overlap 237723 237730, overlap 237726 AAATTTCAATTAAAA CATTGATTTTCCACCT TAA AGGTGGAAAATTTAAG CTTTATTTACAAGAG TERM 271 237756 - 237726 - T 79 -8.4 -3.81651 | opp_overlap 237723 237730, overlap 237724 ATTTCAATTAAAACA TTGATTTTCCACCT TAA AGGTGGAAAATTTA AGCTTTATTTACAAG TERM 272 237730 - 237752 + T 100 -13.6 -3.78141 | opp_overlap 237726 237724, overlap 237723 CAATTAAAACATTGA TTTTCCACCT TAA AGGTGGAAAA TTTAAGCTTTATTTA Cj0260c 237976 - 237761 - | small hydrophobic protein Cj0261c 238751 - 238032 - | putative SAM-dependent methyltransferase TERM 273 238106 - 238129 + g 80 -6.8 -4.75219 | opp_overlap 238106 238109 TTTCAACAAAAGAAC TTACAGTTTC TTTA GAAGCTGTGA TTTTGTTCATACTTA TERM 274 238824 - 238800 - R 90 -10.1 -4.18161 | opp_overlap 238797 238800 238805, overlap 238784 CATAAATTTTTAAAA TTCAAGCCC AAAGAAA GGGCTTGAA TGATTAATTAAAACC TERM 275 238800 - 238824 + r 79 -10.1 -2.84098 | opp_overlap 238784 238800, overlap 238797 238805 CATAAATTTTTAAAA TTCAAGCCC AAAGAAA GGGCTTGAA TGATTAATTAAAACC Cj0262c 240829 - 238832 - | putative methyl-accepting chemotaxis signal transduction protein TERM 276 239398 - 239413 + g 72 -6.2 -4.28049 | TAGCTAAAGCATTAG CAAAGT CTGA ACTTTG TTTTAGCATTTTAAC TERM 277 240350 - 240364 + g 76 -7.8 -3.94381 | AGTTAAACCAACCTC TCCGCT AGC GGCGGA TTTATAAGGTTCTGT TERM 278 241394 - 241368 - g 73 -6 -4.68424 | overlap 241388 TAAGCGAGTTAAAAA TTTGTCCCTT GCCCCAA AAAGGACAAA ATCCTCCGAAATTTC Cj0263 241022 - 241897 + | zinc transporter ZupT TERM 279 241897 - 241914 + T 82 -9.9 -3.33399 | opp_overlap 241897 TTTGCTTGGGCAATA GAAAGCC TTGC GGCTTTC TTAAATTTAGTTCGC TERM 280 241914 - 241897 - T 79 -9.9 -3.01712 | opp_overlap 241897 TTTGCTTGGGCAATA GAAAGCC TTGC GGCTTTC TTAAATTTAGTTCGC Cj0264c 244437 - 241921 - | molybdopterin containing oxidoreductase TERM 281 244051 - 244095 + g 83 -8.7 -4.08692 | opp_overlap 244080, overlap 244049 TTTAAGTTCTTTGGC GATGAGTTTGATCGCTTCA TCATAAC TTACGCGAACAAACTCATC TTTTCCGCGAAGTTC Cj0265c 245023 - 244448 - | putative cytochrome C-type haem-binding periplasmic protein TERM 282 245026 - 245004 - G 78 -6.4 -4.81212 | opp_overlap 245004 245008, overlap 245008 GCTAGGACAACAAAA GAAATGAAAA TTT TTTTCATTAC TAATTCCTTAATATA TERM 283 245022 - 245008 - G 77 -5.8 -4.92812 | opp_overlap 245008 245004, overlap 245004 GGACAACAAAAGAAA TGAAAA TTT TTTTCA TTACTAATTCCTTAA Cj0266c 246013 - 245504 - | putative integral membrane protein Cj0267c 246543 - 246013 - | putative integral membrane protein TERM 284 246210 - 246232 + g 73 -3.6 -5.23016 | overlap 246208 CAAAAATTTTAGCTG TAATTTTACA TTC TTTAAAATTA TTTTTTGAATTATTT TERM 285 246480 - 246468 - G 86 -2.7 -6.10295 | TGAAGAGAAAAAAAA CTAAT AAA ATCAG CATATAATCTACTAA Cj0268c 247643 - 246555 - | putative transmembrane protein ilvE 248570 - 247656 - | branched-chain amino acid aminotransferase Cj0270 248747 - 248953 + | putative tautomerase family protein Cj0271 248950 - 249405 + | bacterioferritin comigratory protein homolog Cj0272 249405 - 250496 + | conserved hypothetical protein Cj0272 TERM 286 250545 - 250559 + F 72 -4.4 -5.07971 | opp_overlap 250555, overlap 250555 AATTTTTAATGATTT TTTTAT ATA ATAAAA TTTTTAATTGTTTTC fabZ 250590 - 251030 + | (3R)-hydroxymyristoyl-ACP dehydratase lpxA 251030 - 251821 + | UDP-N-acetylglucosamine acyltransferase clpX 251784 - 253037 + | ATP-dependent protease ATP-binding subunit mreB 253049 - 254089 + | homolog of E. coli rod shape-determining protein mreC 254079 - 254828 + | homolog of E. coli rod shape-determining protein TERM 287 255351 - 255329 - g 75 -4.2 -5.19212 | AGTATTATTAAAAAA GAAAAAATTG ATG CAATTTTGCC AACTATGGGTGGACA TERM 288 255515 - 255498 - g 88 -5.6 -5.54894 | AATGTATGAAAAAAA TTGGCA TGGATT TGCCAA AATCGATGTATGCGT TERM 289 257188 - 257167 - g 70 -3.8 -5.12617 | gap 1 CAATCAGCCAAAAAA TTCTACTGC AACAA GC-GTAGAA GAAGCGGTTCTTAAG TERM 290 257521 - 257505 - g 70 -3.7 -5.17353 | ATATCGATGAAAAAA TGCAAGA ATT TATTGCA CAAAAAACCGCAGAT carB 255089 - 258358 + | carbamoyl phosphate synthase large subunit TERM 291 258734 - 258700 - g 74 -8.8 -3.31726 | overlap 258698 258701 258712 GTTGCCGATATAATA CTTGATGAGAAATTTT TCG AAAATATCCCATCAAA AATATTAAAACTTTC TERM 292 258733 - 258701 - g 76 -10.1 -2.58822 | overlap 258700 258698 258712 TTGCCGATATAATAC TTGATGAGAAATTTT TCG AAAATATCCCATCAA AAATATTAAAACTTT Cj0280 258355 - 258777 + | hypothetical protein tal 259755 - 258778 - | transaldolase serB 260378 - 259755 - | putative phosphoserine phosphatase cheW 260899 - 260378 - | chemotaxis protein cheA 263213 - 260904 - | chemotaxis histidine kinase TERM 293 262723 - 262745 + g 71 -7 -3.93953 | opp_overlap 262723 262721 262724, overlap 262721 262724 CTTAATTGATTAACA TCTACTTCAG GTT CTGGAGTAGC TATTTCTTGTTTTGG TERM 294 262724 - 262744 + g 79 -10.5 -2.94745 | opp_overlap 262724 262723 262721, overlap 262723 262721 TTAATTGATTAACAT CTACTTCAG GTT CTGGAGTAG CTATTTCTTGTTTTG cheV 264173 - 263217 - | chemotaxis protein Cj0286c 264783 - 264166 - | hypothetical protein TERM 295 264551 - 264537 - G 72 -2.8 -5.41143 | opp_overlap 264537 GAGGTGGTAAAAAAA TATCTC CGT GAGCTA ATTTTATAAAAGCAC greA 265419 - 264934 - | transcription elongation factor GreA lpxB 266525 - 265431 - | lipid-A-disaccharide synthase TERM 296 265923 - 265907 - G 81 -7.3 -4.58685 | opp_overlap 265907 265909 AAAGTTCTTTAAAAA TAGGCAT TAA ACGCCTA ATTTCACTACGCCTT TERM 297 266080 - 266070 - G 70 -4 -5.00616 | GCTTTTGTTAAAAAA TTGA TTA TCAA AGGGCAAAATAGAAG TERM 298 266614 - 266595 - R 89 -10.8 -3.69283 | opp_overlap 266599 GAAGTTATGCAAGAA TACACGCT AAAA AGCGTGTA TGAAGGTTTATTCTC peb3 267374 - 266622 - | major antigenic peptide PEB3 TERM 299 267511 - 267473 - H 91 -9.9 -4.37971 | opp_overlap 267472 267473, overlap 267475 AAAATATTATTAAAA TCTAACTTTTGCTTG GTATTTTTG CAAGCAAAAGTTAAA ATTGTTATTGATGCT TERM 300 267509 - 267475 - H 78 -10.3 -2.51609 | opp_overlap 267473 267472, overlap 267473 AATATTATTAAAATC TAACTTTTGCTTG GTATTTTTG CAAGCAAAAGTTA AAATTGTTATTGATG TERM 301 268845 - 268830 - H 72 -6.2 -4.20932 | opp_overlap 268825 268830 AATATCTAGGTAAAA TTTCCT AAAG AGGAAA TTTAATAGCTTTTGC surE 269064 - 269840 + | stationary phase survival protein SurE Cj0294 269830 - 270489 + | putative MoeB/ThiF family protein Cj0295 270473 - 270931 + | putative acetyltransferase TERM 302 271025 - 270974 - T 100 -12.8 -5.186 | opp_overlap 270964 270979, overlap 270964 270975 270977 270978 TAAAAGATATAAAAA TCATTTTTTTCTATCTTAGATAAA TGAA TTTATCTAAGATAGAAAAAATTAC AAAAATAGCTAGATG TERM 303 271024 - 270975 - T 100 -16.3 -3.6872 | opp_overlap 270964 270979, overlap 270964 270974 270977 270978 AAAAGATATAAAAAT CATTTTTTTCTATCTTAGATAAA TGAA TTTATCTAAGATAGAAAAAATTA CAAAAATAGCTAGAT TERM 304 271022 - 270977 - T 100 -16.7 -3.38472 | opp_overlap 270964 270979, overlap 270964 270975 270974 270978 AAGATATAAAAATCA TTTTTTTCTATCTTAGATAAA TGAA TTTATCTAAGATAGAAAAAAT TACAAAAATAGCTAG TERM 305 271021 - 270978 - T 100 -20.2 -2.61457 | opp_overlap 270964 270979, overlap 270964 270977 270975 270974 AGATATAAAAATCAT TTTTTTCTATCTTAGATAAA TGAA TTTATCTAAGATAGAAAAAA TTACAAAAATAGCTA panD 271421 - 271041 - | aspartate alpha-decarboxylase panC 272266 - 271418 - | pantoate--beta-alanine ligase panB 273101 - 272277 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 306 274052 - 274042 - g 76 -2.6 -5.65678 | opp_overlap 274042 ATAAAAGAGAAAAAA TTTT AGA AAAA TATTTAGATGAACTT Cj0299 273321 - 274094 + | putative periplasmic beta-lactamase modC 275063 - 274179 - | putative molybdenum transport ATP-binding protein TERM 307 274282 - 274294 + g 72 -6.3 -4.34947 | opp_overlap 274276, overlap 274278 TTTAGAAATTCCTCT TCACT AAG AGTGA TTTTAATAATATCTT modB 275734 - 275060 - | putative molybdenum transport system permease protein TERM 308 275143 - 275126 - G 73 -3.5 -5.29208 | AAAAGAAAAAATAAA CAATATA AAAG CATATTG ATGGGCTAAGCTATA Cj0302c 276128 - 275727 - | putative molybdenum-pterin binding protein modA 276874 - 276125 - | putative molybdate-binding lipoprotein TERM 309 276672 - 276659 - G 71 -2.4 -5.40474 | opp_overlap 276659 ATCCGCTGAAAAAAA GAGA TCAAAT TCTC TTCCTTGTTTTAAAA bioC 277611 - 276925 - | putative biotin synthesis protein TERM 310 277023 - 277010 - G 76 -5.3 -5.01732 | overlap 277022 AATTCTTTTAAAAAA CCTTT ATTT AAAGG ATAAAATCCTAAAGA TERM 311 277542 - 277511 - G 81 -8.4 -4.09511 | gap 1, opp_overlap 277503 AATACTTTTTCAAAA TGTGAAATTCTTAAA TTT TTTAA-AATTTCACA AAGTTTTAAACCCAT Cj0305c 278219 - 277608 - | conserved hypothetical protein Cj0305c TERM 312 277699 - 277715 + g 73 -3.7 -5.28481 | TTTTTTAAAGCATTT GGTGGAA AAA TTTCATC TTTTTTACTTGAATA TERM 313 277956 - 277967 + g 71 -5.8 -4.45696 | TATGCCTAAATTTGT GCCA TTTA TGGC TATTTTTTGTTTAAA bioF 279358 - 278216 - | 8-amino-7-oxononanoate synthase TERM 314 278470 - 278457 - G 71 -2.3 -5.42259 | opp_overlap 278457 TTACTTTTAAAAAAA GTGCT TAAA AGCTC TAATTTTTCTCTTTC TERM 315 279006 - 278992 - G 78 -6.4 -4.83615 | TATCGGTTAGAAAAA GCGTCT TAG AAACGC TAGAAAGTGCTGCTA TERM 316 280216 - 280186 - g 83 -10.6 -3.2794 | opp_overlap 280182 280181 TTGGACGCACAGGAA CTTTGTTTGCCTTA CAT CAATGCAAACAAAG CCCCGATTTTATCTG TERM 317 280480 - 280464 - g 78 -6.7 -4.67552 | opp_overlap 280464 280463 TTTATCAAAAAAGAA TTTTCAA GAC TTGAAAA ATTTGACTTTTTGGG bioA 279426 - 280709 + | adenosylmethionine--8-amino-7-oxononanoate transaminase bioD 281301 - 280696 - | putative dethiobiotin synthetase Cj0309c 281625 - 281311 - | putative efflux protein TERM 318 281378 - 281367 - G 78 -3 -5.53991 | opp_overlap 281362 281367 CAGCGATTAAAAAAA GTTT CAAA AAAC TTTTACTTTCTTTAT Cj0310c 281967 - 281629 - | putative efflux protein Cj0311 282101 - 282637 + | 50S ribosomal protein L25/general stress protein Ctc TERM 319 282684 - 282698 + G 71 -5.6 -4.51097 | opp_overlap 282683 282684 AGAGTATGAAAATAC CCGTCA TAA TGTCGG TTTTATGCTAATTGA pth 282634 - 283179 + | peptidyl-tRNA hydrolase TERM 320 283307 - 283322 + G 74 -6.2 -4.3821 | GATCTACCAAAAGCC GCAAAT CTTG ATTTGC TTTATGTTATGTTTT TERM 321 284054 - 284073 + G 100 -9.4 -4.5538 | opp_overlap 284054 284058 TTTTTTCCTGTAATA GCAAGATT TTTT AATCTTGC TTTTGTAACTTTTAT TERM 322 284073 - 284054 - g 75 -9.4 -3.01712 | opp_overlap 284054, overlap 284058 TTTTTTCCTGTAATA GCAAGATT TTTT AATCTTGC TTTTGTAACTTTTAT Cj0313 283181 - 284239 + | putative integral membrane protein lysA 284283 - 285491 + | diaminopimelate decarboxylase TERM 323 286077 - 286059 - g 71 -4.7 -4.83518 | opp_overlap 286060 286068, overlap 286054 286068 AATAAGAAGACAAAA TTCAAAA ATTGA TTTTGAA GATATTAAAATCATT Cj0315 285493 - 286260 + | putative HAD-superfamily hydrolase, subfamily IIA pheA 286248 - 287321 + | chorismate mutase/prephenate dehydratase TERM 324 287761 - 287743 - g 70 -3.9 -5.06451 | GATGAGTTTAAAAAA CTTTATG AAACG CACAAAG ATGAAATTAAACTTA TERM 325 288011 - 288035 + G 71 -8.7 -2.87003 | overlap 288007 GATTAGGAGGCTTAC GCATTGGTTAT GGC ATAGCTAATGC TAATATTATTAGTGC hisC 287311 - 288405 + | histidinol-phosphate aminotransferase TERM 326 289984 - 289972 - g 71 -3.4 -5.30155 | opp_overlap 289972 GCAGCAAGGAAAAAA GTTG AAGAA CAAC TTGGTTTTGGGGATA fliF 288457 - 290139 + | flagellar MS-ring protein TERM 327 290182 - 290207 + G 74 -6.9 -4.31835 | TGGTCTATGATGATT TATCGATGCCT GAGA AGGTAGCGATA TTTCTTATACAACTT TERM 328 290320 - 290334 + G 70 -6.4 -4.10855 | AAAATGTTGATAGAT CTGTAG CTA CTGCAG TTTTAGAAGAATTTT fliG 290139 - 291167 + | flagellar motor switch protein G TERM 329 291706 - 291692 - g 73 -8.6 -3.10925 | overlap 291691 AAAATGAGAAAGAAT TAGCAG ATA CTGCTA TAGATATCGCTAAAG TERM 330 291755 - 291739 - g 70 -5.9 -4.21933 | GTAATCTTAAAAGAA CTTGAAC TAA ATTCAAG TAAGATAGCTTATGC fliH 291175 - 292005 + | flagellar assembly protein H dxs 291998 - 293845 + | 1-deoxy-D-xylulose-5-phosphate synthase perR 293931 - 294341 + | peroxide stress regulator TERM 331 294363 - 294351 - f 72 -6.3 -4.34008 | opp_overlap 294350 294353 294359, overlap 294352 294353 294359 CATTAAGCAAAATAA GGTTA AAA TAACC CATATATTTTAAGGG TERM 332 294387 - 294353 - f 78 -10.3 -2.50508 | opp_overlap 294350 294353 294359, overlap 294351 294352 294359 TTAAGCAAAATAAGG TTAAAATAACCCATA TATTT TAAGGGTTATTTTAA TGGTTTATGAAATTC TERM 333 294353 - 294387 + F 79 -10.3 -3.02632 | opp_overlap 294351 294352 294353 294359, overlap 294350 294359 TTAAGCAAAATAAGG TTAAAATAACCCATA TATTT TAAGGGTTATTTTAA TGGTTTATGAAATTC TERM 334 294731 - 294743 + G 70 -3.5 -5.07107 | AGAGCCTAAAATTTG TATTT TAA AAATA TTTTTTCCAACTTTG TERM 335 294851 - 294865 + G 70 -5.8 -4.34402 | opp_overlap 294860 TATCGTTTTATATGG TTTTGA ATA TCAAAA TTTTGATATAGAGAA Cj0323 294387 - 295583 + | hypothetical protein TERM 336 295741 - 295730 - g 74 -3 -5.47218 | TTGTATTTAAAAAAA GATT TAAA AATC GCTGATATTGCCTGT TERM 337 295823 - 295813 - g 76 -2.6 -5.63857 | overlap 295816 AAAAATGGAAAAAAA TATT TTA AATA TTAAAGGTATTGATC ubiE 295586 - 296293 + | ubiquinone/menaquinone biosynthesis methyltransferase xseA 296290 - 297453 + | exodeoxyribonuclease VII large subunit serC 297463 - 298539 + | phosphoserine aminotransferase Cj0327 298536 - 298886 + | putative endoribonuclease L-PSP family protein TERM 338 298896 - 298876 - T 86 -11.3 -3.27525 | opp_overlap 298880, overlap 298871 CTTTTGGAAAGCTAA GAGAGAATT AAA AATTCTCTC CTCCAAATTTTAAAA fabH 299857 - 298883 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 339 299770 - 299781 + g 72 -4.4 -5.03314 | overlap 299768 TGATCCATTCATCGG TGGT ATCT ACCA TTTTTTCAAGATCAG plsX 300836 - 299850 - | putative glycerol-3-phosphate acyltransferase PlsX rpmF 300988 - 300842 - | 50S ribosomal protein L32 TERM 340 300977 - 300987 + g 74 -3.2 -5.43621 | GCTCACTCTTCTCTT TGGT ACT GCCA TTTTTTCTCCTTTAT Cj0331c 301365 - 301012 - | hypothetical protein ndk 301779 - 301366 - | nucleoside diphosphate kinase TERM 341 301852 - 301881 + r 100 -11.7 -5.11033 | opp_overlap 301852 301859, overlap 301859 301876 GAAAGTTAAATTAAA TTAAAAAGCTAGG AATC TCTAGCTTTTTAA TTTTTTAAAATTATG TERM 342 301881 - 301852 - R 95 -11 -4.12279 | opp_overlap 301852 301859 301876, overlap 301859 GAAAGTTAAATTAAA TTAAAAAGCTAG GAATCT CTAGCTTTTTAA TTTTTTAAAATTATG TERM 343 301859 - 301874 + r 81 -5.4 -5.25735 | opp_overlap 301859 301852, overlap 301852 AAATTAAATTAAAAA GCTAGG AATC TCTAGC TTTTTAATTTTTTAA TERM 344 301874 - 301859 - R 74 -4.7 -5.05577 | opp_overlap 301852 301859, overlap 301852 AAATTAAATTAAAAA GCTAG GAATCT CTAGC TTTTTAATTTTTTAA fdxA 302176 - 301892 - | ferredoxin TERM 345 302261 - 302236 - H 71 -5.7 -4.4448 | gap 1, opp_overlap 302235 302232 302236 302240 302241, overlap 302232 302224 302241 AAATTCTTAAATAAA GTAAA-TTTTGA TAA TCAAAAATTTAC CTTATTTGATAATAA TERM 346 302498 - 302513 + G 71 -4.8 -4.81644 | overlap 302507 AAGGAGCGGTAGTAT TCTTTT ATCC AAAAGA TTTTACTTTTGTTTG ahpC 302383 - 302979 + | alkyl hydroperoxide reductase TERM 347 302994 - 303008 + F 95 -7.1 -5.30199 | opp_overlap 302994 ATTTCTTAGTATAAA GCCTC TTTAC GAGGC TTTTTCTTCATTTTT TERM 348 303008 - 302994 - f 71 -7.1 -3.96327 | opp_overlap 302994 ATTTCTTAGTATAAA GCCTC TTTAC GAGGC TTTTTCTTCATTTTT TERM 349 303488 - 303500 + G 82 -6.3 -5.26875 | opp_overlap 303479 303488 ATCAATCCTCTAAAA GGTTT AAA AAACC TTTTTTCATTGAAAA TERM 350 303500 - 303488 - g 70 -6.3 -4.11751 | opp_overlap 303488, overlap 303479 ATCAATCCTCTAAAA GGTTT AAA AAACC TTTTTTCATTGAAAA TERM 351 303671 - 303690 + G 90 -7.2 -5.37865 | opp_overlap 303659 AGAGCTATTGTTTTA GCAGCTAT TGTT ATAGTTGC TTTTTTAATTATTGC flhB 303098 - 304186 + | flagellar biosynthesis protein FlhB motB 304935 - 304192 - | flagellar motor protein MotB TERM 352 304884 - 304848 - G 100 -8.7 -5.20606 | opp_overlap 304879 AAAGAGCAATAAAAA GTGCCAAAAGCAAACTT AGA AAGTCTGCATAAGGCAC AGCCCATTTTTCACC motA 305714 - 304938 - | flagellar motor protein MotA TERM 353 305257 - 305243 - G 72 -7.8 -3.6279 | overlap 305233 AAACCGCTCCAACAA GCCCCA TGG TAGGGC AAGTTTCTCCAAATA polA 308369 - 305730 - | DNA polymerase I Cj0339 308533 - 309894 + | putative MFS (Major Facilitator Superfamily) transport protein Cj0340 309891 - 310898 + | putative nucleoside hydrolase Cj0341c 311297 - 310854 - | putative integral membrane protein TERM 354 311073 - 311083 + g 81 -2.6 -5.79595 | opp_overlap 311073 GGATTTGCTAAAGTA TTTT TCT AAAA TTTTTTCTTTTCCAA uvrA 314127 - 311302 - | excinuclease ABC subunit A TERM 355 311345 - 311360 + g 85 -2.5 -5.86465 | AAGTCTAGATAATAT CCTGT GTAAGA ACGGG TTTTTTTGTGTTCTT TERM 356 312069 - 312080 + g 71 -7.2 -3.73775 | TTGAACGTGGTGTGC GCCC AATT GGGC TTTGATCAAGATAAA TERM 357 312519 - 312529 + g 71 -4.6 -4.81863 | GCTCTACGACAATTA GGGT ATT GCCC TTTTGTTGTAAATTT TERM 358 314202 - 314181 - R 71 -5.9 -4.50841 | overlap 314184 ATAATAATATTAAAA GAACTTGGA TAAA TCCAAGTTA AAAATTTATAAAATT TERM 359 314199 - 314184 - R 77 -7.6 -4.33487 | overlap 314181 ATAATATTAAAAGAA CTTGGA TAAA TCCAAG TTAAAAATTTATAAA Cj0343c 314985 - 314200 - | putative integral membrane protein TERM 360 315043 - 315058 + H 75 -3.3 -5.61596 | overlap 315030 315039 TTTTATCTTATTAAG CTAAG TATTAT CTTAG TTTTTTTATAACAAT TERM 361 315119 - 315146 + G 75 -5.9 -4.74598 | opp_overlap 315119 315129 AAAAATGTTTCAAAA TATTATAAAAT ATAAAG ATTTTATAATA TTTATTTTAAATTTA Cj0344 315108 - 315233 + | hypothetical protein trpE 315398 - 316648 + | putative anthranilate synthase component I trpD 316645 - 318246 + | - anthranilate synthase component II trpF 318233 - 318832 + | N-(5'-phosphoribosyl)anthranilate isomerase TERM 362 319359 - 319369 + G 72 -2.6 -5.42131 | overlap 319362 AGCTTGGGTTGGAGA TATT AAA AATA TTTTTTATGTGGTTG trpB 318829 - 320007 + | tryptophan synthase subunit beta trpA 320000 - 320749 + | tryptophan synthase subunit alpha Cj0350 320820 - 321242 + | hypothetical protein fliN 321242 - 321550 + | flagellar motor switch protein TERM 363 322311 - 322270 - g 75 -4.2 -5.20633 | gap 1, opp_overlap 322268 322270 AAAAACAGAGAAAAA TTTTG-ATTCTTTTTTT GAAGAGAAT AAAAAAAGAATTCAAAA TCTTATAGAGCAGCG Cj0352 321551 - 322348 + | putative transmembrane protein Cj0353c 323805 - 322345 - | phosphatase TERM 364 322815 - 322803 - G 76 -6.3 -4.58283 | TAAGGGTTGTAAAAA TTTGC AGA GCAAA ATGTGGAGTTTTATT TERM 365 323346 - 323356 + g 72 -2.6 -5.4505 | opp_overlap 323346 GAGATATGCAAGAAA TAAT TCT ATTA TTTTTTATTAAACAC fdxB 324050 - 323805 - | ferredoxin TERM 366 324161 - 324137 - R 71 -5.7 -4.52349 | opp_overlap 324139, overlap 324138 324139 AGAAATAAAGATAAA TTTTTTGCACC GAA GGTGCAAAATT GTTAAGATTTTTTAG TERM 367 324160 - 324138 - R 75 -9.2 -3.28969 | opp_overlap 324139, overlap 324137 324139 GAAATAAAGATAAAT TTTTTGCACC GAA GGTGCAAAAT TGTTAAGATTTTTTA TERM 368 324139 - 324159 + r 100 -12.7 -3.75617 | opp_overlap 324139 324138 324137 AAATAAAGATAAATT TTTTGCACC GAA GGTGCAAAA TTGTTAAGATTTTTT TERM 369 324159 - 324139 - R 95 -12.7 -2.55755 | opp_overlap 324139, overlap 324138 324137 AAATAAAGATAAATT TTTTGCACC GAA GGTGCAAAA TTGTTAAGATTTTTT Cj0355c 324834 - 324163 - | two-component regulator folB 325230 - 324913 - | putative dihydroneopterin aldolase Cj0357c 325823 - 325215 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 370 325921 - 325905 - H 74 -5.3 -4.78345 | opp_overlap 325905, overlap 325896 AATAAACAAAAATAA TTTTTAT AGG ATAAAAA TAGTATTAATTAATT TERM 371 325938 - 325960 + H 73 -3.6 -5.28942 | AGTATTAATTAATTG TAAATATTTT TTA ATAATATTTA TTTTTATTTAAGCTC Cj0358 326024 - 327049 + | putative cytochrome C551 peroxidase TERM 372 327053 - 327086 + F 90 -8.3 -4.68511 | opp_overlap 327059 327062, overlap 327059 CCTGAACTATAAGGT TCCAAACAAGCTCTA ATTT TAGAGCTTGTTTAAA TTTCTTTATCTTAGC TERM 373 327059 - 327080 + F 100 -11.7 -3.97446 | opp_overlap 327059 327062, overlap 327053 CTATAAGGTTCCAAA CAAGCTCTA ATTT TAGAGCTTG TTTAAATTTCTTTAT TERM 374 327080 - 327059 - f 91 -11.7 -3.58533 | opp_overlap 327059 327053, overlap 327062 CTATAAGGTTCCAAA CAAGCTCTA ATTT TAGAGCTTG TTTAAATTTCTTTAT TERM 375 327077 - 327062 - f 74 -7.6 -3.9243 | opp_overlap 327059 327053, overlap 327059 TAAGGTTCCAAACAA GCTCTA ATTT TAGAGC TTGTTTAAATTTCTT glmM 327143 - 328480 + | phosphoglucosamine mutase lspA 328473 - 328943 + | lipoprotein signal peptidase Cj0362 328927 - 329379 + | putative integral membrane protein Cj0363c 330722 - 329376 - | coproporphyrinogen III oxidase TERM 376 330811 - 330789 - H 79 -8 -3.88442 | opp_overlap 330785 330781 TAAAATAGGAGTAAA TTTTTTATTT CTT AAATAAAAAA TGGGATTAAGTTTTT Cj0364 330851 - 331102 + | hypothetical protein TERM 377 331136 - 331107 - T 83 -11 -2.53759 | overlap 331118 AAGATTTTTAATTTA TTTAGAGAATAG AACAAA CTATTCTCTAAA AGACATATCTAAATT cmeC 332603 - 331125 - | outer membrane channel protein CmeC (multidrug efflux system CmeABC) TERM 378 332141 - 332156 + g 71 -9 -2.78032 | overlap 332140 332155 AGCCTGATTTTGAGG CGCGAT ATGT ATCGCG ATATTTTCCCCAAAG cmeB 335718 - 332596 - | inner membrane efflux transporter CmeB (multidrug efflux system CmeABC) TERM 379 335569 - 335583 + g 71 -7.2 -3.70902 | overlap 335567 TGCATCAGCTCCTGT GTAAGT TGC ACTTAC TTTAACTGTAGGAGG cmeA 336821 - 335718 - | periplasmic fusion protein CmeA (multidrug efflux system CmeABC) TERM 380 336868 - 336851 - R 79 -5.7 -5.05577 | opp_overlap 336850, overlap 336845 AAATTAAATTAAAAA TTGTAAT TTTT ATTACAA AAATTTTTGGCTAAT cmeR 337548 - 336916 - | transcriptional regulator CmeR Cj0369c 338911 - 337535 - | putative ferredoxin domain-containing integral membrane protein TERM 381 339155 - 339134 - g 77 -4.5 -5.22039 | opp_overlap 339138 CGTAAATTCAAAAAA CAAGTAGAT AGAA ATCTAGTTG TGACTGAAGTAAGAG rpsU 339071 - 339283 + | 30S ribosomal protein S21 TERM 382 339302 - 339291 - f 77 -7.2 -4.2803 | opp_overlap 339291 GACTCTAACCCAAAA GCCC GAAA GGGC TTTTTTATATCTACA TERM 383 339291 - 339302 + F 95 -7.2 -5.4251 | opp_overlap 339291 GACTCTAACCCAAAA GCCC GAAA GGGC TTTTTTATATCTACA TERM 384 339529 - 339539 + G 78 -6.8 -4.58466 | AATCAAGCGGCTAAT GCTC AAG GAGC TTTTGTAATTATCGA Cj0371 339403 - 340008 + | hypothetical protein Cj0372 340018 - 341187 + | putative glutathionylspermidine synthase Cj0373 341190 - 342125 + | 2-hydroxyacid dehydrogenase Cj0374 342115 - 342606 + | nucleotide-binding protein Cj0375 342615 - 343091 + | putative lipoprotein Cj0376 343102 - 343926 + | putative periplasmic protein TERM 385 344710 - 344731 + G 91 -4.5 -5.95946 | overlap 344726 ATGAATATTTAAATG CTTTTGGAG ATAT TTCTAAAAG TTTTTTTATTATTGA TERM 386 344943 - 344931 - g 82 -4.1 -5.55695 | overlap 344933 CAACAAGATAAAAAA GTCCT AGA AAGAC TTCATTCTTGGGGTA TERM 387 345604 - 345594 - g 72 -4 -5.06585 | overlap 345603 GAAAGTATACAAAAA GAAT TAA ATTC AAGTTTTGATAAAAG Cj0377 343926 - 345638 + | putative AAA family ATPase Cj0378c 346174 - 345635 - | putative ferric reductase-like transmembrane protein. Functional classification-Membranes,lipoproteins and porins TERM 388 346114 - 346091 - G 81 -8.3 -4.26881 | opp_overlap 346090, overlap 346086 TTTTACAAAATCAAA GGCTTTTAT GATATG ATAAAAGCC ATAGATTAAACTTAT Cj0379c 347067 - 346174 - | putative sulfite oxidase subunit YedY Cj0380c 347908 - 347123 - | hypothetical protein TERM 389 347221 - 347239 + g 100 -7.6 -5.81622 | TTGAAGTTTCTTGCA TTAGAATT TTA AATTCTAA TTTTTTTAATTTTCT TERM 390 347544 - 347555 + g 71 -3 -5.27769 | overlap 347538 AAACAGTCATTGATA TTTG AAAT CAAA TTTTTAATTTTTTGT TERM 391 347717 - 347727 + g 72 -4 -5.10665 | opp_overlap 347712 347717, overlap 347712 347724 CATATAATTATAAAC TTTC AGG GAAA TTTTATTTCTTACCT pyrF 348744 - 347905 - | orotidine 5'-phosphate decarboxylase nusB 349139 - 348741 - | transcription antitermination protein NusB ribH 349603 - 349139 - | riboflavin synthase subunit beta kdsA 350415 - 349600 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 392 350206 - 350222 + g 71 -4.5 -4.83593 | CATACCAAATTCATC TTTTACG CTT TGTAAAA TTTTTAATCCTTCTT Cj0385c 351344 - 350412 - | putative integral membrane protein TERM 393 351673 - 351661 - g 81 -2.7 -5.82388 | AAATGTGAAAAAAAA CACTT TAA AAGTA GCTAAAGAAAGCGAT TERM 394 352125 - 352145 + G 70 -8.3 -3.16191 | overlap 352118 TTGTAAGTTCTATTG CAGGAACTA CTA TAGATCCTG TTAATGAAAGTGTAG engA 351446 - 352828 + | GTP-binding protein EngA aroK 352815 - 353312 + | shikimate kinase TERM 395 353486 - 353496 + G 75 -4.6 -5.055 | opp_overlap 353486, overlap 353494 CAAAATTCCTTAAAA GCTG CTG CGGC TTTTTTAAGCCTTGG trpS 353309 - 354268 + | tryptophanyl-tRNA synthetase serS 354279 - 355514 + | seryl-tRNA synthetase Cj0390 355524 - 357986 + | putative transmembrane protein TERM 396 358019 - 357980 - T 100 -17.6 -3.7732 | opp_overlap 357990, overlap 357990 TTTTGATATTAATAA CAACTAAAAATGCTTAGA AATT TCTAAGCATTTTTAGTTA AGCTTGAAGATCTAG TERM 397 358009 - 357990 - T 100 -9.4 -5.03201 | opp_overlap 357990, overlap 357980 AATAACAACTAAAAA TGCTTAGA AATT TCTAAGCA TTTTTAGTTAAGCTT TERM 398 357990 - 358009 + T 100 -9.4 -4.87893 | opp_overlap 357990 357980 AATAACAACTAAAAA TGCTTAGA AATT TCTAAGCA TTTTTAGTTAAGCTT Cj0391c 358652 - 358017 - | hypothetical protein TERM 399 358715 - 358747 + r 100 -10.9 -4.79352 | opp_overlap 358715 358712 358717 358722, overlap 358709 AAAAATTTATAAGGA CATTAAATTCCTT ATTTTCA AAGGAATTTAATG TTTTATTGTAGATAA TERM 400 358747 - 358715 - R 82 -10.9 -2.8967 | opp_overlap 358709 358715, overlap 358712 358717 358722 AAAAATTTATAAGGA CATTAAATTCCTT ATTTTCA AAGGAATTTAATG TTTTATTGTAGATAA pyk 360192 - 358750 - | pyruvate kinase TERM 401 359530 - 359551 + g 74 -6.7 -4.35042 | opp_overlap 359518, overlap 359522 359531 AAATTTTTCAATTTT TGCAAAAAT AGAT ATTTTTGCG TTATTTTGTGCTAAA TERM 402 359753 - 359735 - G 70 -3.9 -5.0538 | TTTGAGTTTAAAAAA CCATCAT TTTCT ATAATGG TTTCAATTTTTTGAT mqo 361587 - 360241 - | putative malate:quinone oxidoreductase Cj0394c 362335 - 361706 - | pantothenate kinase Cj0395c 362612 - 362322 - | hypothetical protein TERM 403 362560 - 362583 + g 87 -8.3 -4.69324 | opp_overlap 362557 ATACTTAAGTCATAG GGCTTTAAA TTTAAT TTTAAAGCC TTTATTGTTTGTTCT Cj0396c 363607 - 362609 - | putative lipoprotein Cj0397c 364182 - 363604 - | hypothetical protein TERM 404 364095 - 364078 - G 73 -5.7 -4.65446 | opp_overlap 364078, overlap 364071 AGCAGATATATAAAA TTTATAC TTGC GTATAAA TCTCTCTCCTTTGAT gatC 364326 - 364610 + | aspartyl/glutamyl-tRNA amidotransferase subunit C Cj0399 364678 - 365241 + | colicin V production protein homolog TERM 405 365474 - 365493 + G 74 -6.5 -4.4078 | opp_overlap 365458 365474 TTGCTTGAAGAAGCA GAAATGG TAACTT CCATTTC TTTTGGTTCAGCAGG fur 365243 - 365716 + | ferric uptake regulator lysS 365717 - 367222 + | lysyl-tRNA synthetase TERM 406 367721 - 367702 - g 88 -4.4 -5.75538 | gap 1 GCTAAAAAAGAAAAA CCA-AAACT TAT AGTTTGTGG AGCTAGTGCTTATGC glyA 367219 - 368463 + | serine hydroxymethyltransferase TERM 407 368479 - 368506 + G 74 -7.2 -3.88232 | gap 1, opp_overlap 368477, overlap 368481 TTTCACCAATGGATA TG-TCGCTAATTA AAA TAATTGGCGATCA TTATTATATAAGACG TERM 408 368481 - 368503 + G 77 -10 -3.01243 | opp_overlap 368477, overlap 368479 TCACCAATGGATATG TCGCTAATTA AAA TAATTGGCGA TCATTATTATATAAG Cj0403 368460 - 369005 + | hypothetical protein TERM 409 369100 - 369082 - g 74 -5.4 -4.91084 | AATAAAAGTGAAAAA GTAAAAAA AAT TCTTTTAC GAGTTATTGCTTTAG Cj0404 369019 - 369855 + | putative transmembrane protein TERM 410 369917 - 369945 + G 76 -7.6 -3.87373 | gap 1, opp_overlap 369908 369911 369917, overlap 369908 369938 TAGAATGCATAATAA TGCTATTAAAGCC TTAG GGCTT-GATAGCA TTTATACACGCTATC aroE 369852 - 370640 + | shikimate 5-dehydrogenase TERM 411 370663 - 370675 + T 80 -4.9 -5.36441 | overlap 370653 GTTATTTTTCTTGTA TAAGA AAA TCTTA TTTTTTGTGTGAGAA Cj0406c 371614 - 370715 - | putative lipoprotein lgt 371704 - 372519 + | prolipoprotein diacylglyceryl transferase frdC 372589 - 373371 + | fumarate reductase cytochrome b-556 subunit TERM 412 374774 - 374755 - g 74 -8 -3.86975 | overlap 374750 AGAAGGTAAACATAA TGTTTTTG AAAT CAAAAACA GAATGAAAGAAATCA frdA 373355 - 375346 + | fumarate reductase flavoprotein subunit sdhB 375339 - 376064 + | fumarate reductase iron-sulfur subunit TERM 413 376089 - 376066 - f 93 -9 -4.88895 | gap 1, opp_overlap 376066 376068 AAAGAAATAAATAAA TCTTTCCCCTT TTT AAGGGG-AAGA TTGTGAAAGAATTAT TERM 414 376066 - 376089 + F 77 -9 -3.30338 | gap 1, opp_overlap 376066, overlap 376068 AAAGAAATAAATAAA TCTTTCCCCTT TTT AAGGGG-AAGA TTGTGAAAGAATTAT TERM 415 376068 - 376088 + F 81 -10.5 -2.57881 | opp_overlap 376066, overlap 376066 AGAAATAAATAAATC TTTCCCCTT TTT AAGGGGAAG ATTGTGAAAGAATTA TERM 416 376634 - 376648 + G 70 -3.6 -5.07107 | opp_overlap 376622 376621, overlap 376621 AAGTCTTTTAAATGC TCTTTT AAA AGAAGA TTTTTTAGGGGTTTC Cj0411 376092 - 378278 + | putative ATP/GTP binding protein TERM 417 378694 - 378682 - g 72 -6.3 -4.34912 | opp_overlap 378681 378682, overlap 378679 AATGAAGTAAAACAA GCAAA AAG TTTGC ATATTTTTGCACCCA Cj0412 378268 - 380097 + | putative ATP/GTP binding protein TERM 418 380592 - 380614 + G 75 -4.1 -5.20333 | opp_overlap 380582 380592 GGAGAGCTTGTTAAA GCAAGTGTA AAATC TGCTCTTGC TTTTTATTCTAAATC Cj0413 380097 - 380801 + | putative periplasmic protein TERM 419 380788 - 380809 + F 76 -6.7 -4.5287 | opp_overlap 380788 TTAATTCTAAAGATA TAGAGCTTT ATTA AAAGTTCTA TTTTCATTACTTTCA TERM 420 380896 - 380908 + F 70 -6.3 -4.04773 | opp_overlap 380887 380895 380896, overlap 380885 AATTTATATTAATAG GACTA ATA TAGTC TTGTTTAAATTATTA Cj0414 380937 - 381665 + | putative oxidoreductase subunit Cj0415 381667 - 383388 + | putative GMC oxidoreductase subunit TERM 421 383388 - 383428 + F 77 -5 -5.17786 | gap 1, opp_overlap 383395, overlap 383389 383392 383394 383395 AAAAAGCTTAGCTTG ATAATAA-CTTGAGAGTTT TTGA AAACTCTCAAGATTATAAA TTTTTAATTTTCTTC TERM 422 383389 - 383427 + F 79 -8.5 -3.68231 | gap 1, opp_overlap 383395, overlap 383388 383392 383394 383395 AAAAGCTTAGCTTGA TAATAA-CTTGAGAGTTT TTGA AAACTCTCAAGATTATAA ATTTTTAATTTTCTT TERM 423 383392 - 383424 + F 79 -10.2 -2.91298 | gap 1, opp_overlap 383395, overlap 383389 383388 383394 383395 AGCTTAGCTTGATAA TAA-CTTGAGAGTTT TTGA AAACTCTCAAGATTA TAAATTTTTAATTTT TERM 424 383394 - 383421 + F 84 -10 -3.56762 | opp_overlap 383395, overlap 383392 383389 383388 383395 CTTAGCTTGATAATA ACTTGAGAGTTT TTGA AAACTCTCAAGA TTATAAATTTTTAAT TERM 425 383420 - 383395 - f 100 -13.5 -3.79906 | opp_overlap 383394 383392 383389 383388 383395 TTAGCTTGATAATAA CTTGAGAGTTT TTGA AAACTCTCAAG ATTATAAATTTTTAA TERM 426 383395 - 383420 + F 100 -13.5 -2.72973 | opp_overlap 383395, overlap 383394 383392 383389 383388 TTAGCTTGATAATAA CTTGAGAGTTT TTGA AAACTCTCAAG ATTATAAATTTTTAA Cj0416 383559 - 383657 + | hypothetical protein Cj0417 383677 - 383823 + | hypothetical protein Cj0418c 384651 - 383947 - | hypothetical protein Cj0419 384759 - 385121 + | putative histidine triad (HIT) family protein TERM 427 385144 - 385158 + F 72 -4.4 -5.0916 | opp_overlap 385154, overlap 385154 TAATGATTTGTTATG TTTTAT CTA ATAAAA TTTTTATATTGAAAA Cj0420 385195 - 385767 + | putative periplasmic protein TERM 428 385775 - 385797 + T 95 -11.4 -4.10363 | AAAAATAATTTTTTA GTCTAAGAGT CTT GCTCTTAGAC TTTGTAAATTTTTAT Cj0421c 386728 - 385772 - | putative integral membrane protein Cj0422c 386999 - 386790 - | putative H-T-H containing protein Cj0423 387168 - 387395 + | putative integral membrane protein Cj0424 387404 - 388036 + | putative acidic periplasmic protein Cj0425 388049 - 388465 + | putative periplasmic protein TERM 429 389109 - 389120 + G 76 -3.6 -5.47218 | AAGTTTTGTTTTTAG GTGC CGAT GCGC TTTTTTTAGATGAGC Cj0426 388595 - 390172 + | putative ABC transporter ATP-binding protein Cj0427 390162 - 390497 + | hypothetical protein TERM 430 390671 - 390647 - g 71 -6.6 -3.89903 | gap 1, opp_overlap 390662 AAACAGGTGGATAAA CAGATTGAAGA TTAT TCTTCA-TCTG GAGATTCTGATTTTA Cj0428 390572 - 390955 + | hypothetical protein TERM 431 390957 - 390981 + T 84 -10.1 -3.54146 | opp_overlap 390962, overlap 390962 TGAACGCAATTTAAT CAAAAGCTCCA TTT TGGAGCTTTTA TATTTACTTGCAAGA TERM 432 390976 - 390962 - T 91 -10 -4.45664 | opp_overlap 390957 390962 GCAATTTAATCAAAA GCTCCA TTT TGGAGC TTTTATATTTACTTG TERM 433 390962 - 390976 + T 100 -10 -4.84539 | opp_overlap 390962, overlap 390957 GCAATTTAATCAAAA GCTCCA TTT TGGAGC TTTTATATTTACTTG Cj0429c 391583 - 390999 - | conserved hypothetical protein Cj0429c TERM 434 391173 - 391153 - G 72 -6.3 -4.21787 | overlap 391154 AAAAAATGTTCAAAA CGATTTAAA TTT TTTAAATCA ATAGCAATGGTTGTA TERM 435 392603 - 392620 + G 93 -5.7 -5.69023 | opp_overlap 392595 392602 TAAGGTATAAAATCT TTATAGA ATGT TCTATAA TTTTTTTGATATTTT Cj0430 391711 - 392937 + | putative integral membrane protein TERM 436 393508 - 393498 - g 72 -4 -5.14965 | ATGCCTATGAAAAAA CTTT AGC AAAG AATAATTCAGATTGC Cj0431 392930 - 393544 + | putative periplasmic ATP/GTP-binding protein TERM 437 394084 - 394062 - T 72 -4.3 -4.99435 | opp_overlap 394062 TCTAATAATTAAAAA GATTAAAAA CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 438 394112 - 394093 - T 72 -8 -3.31322 | TTTAATCTTTCATAA CTTTTTCT TTGA AGAAAAAG ATTAAACTATCTATA TERM 439 394149 - 394112 - T 72 -4.3 -5.06414 | opp_overlap 394119 TTCTTTGAAGAAAAA GATTAAACTATCTATAA TTTT TTATGGAGAGTTTGATC CTGGCTCAGAGTGAA TERM 440 395611 - 395628 + T 74 -9.1 -3.07291 | opp_overlap 395611 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 441 396097 - 396119 + T 86 -7.8 -4.56187 | overlap 396099 TTAATATATATACTT CCTTTAGGTT TTA AACCTAAATG TTCTTTTTAATTATC TERM 442 396099 - 396117 + T 83 -9 -3.86437 | overlap 396097 AATATATATACTTCC TTTAGGTT TTA AACCTAAA TGTTCTTTTTAATTA TERM 443 396717 - 396700 - T 91 -11.3 -3.66803 | opp_overlap 396699 396698, overlap 396693 GCGCAAGAGGGCAAA CCCAGTG CTTG CACTGGG GGTTGTAGGACTGCA TERM 444 399366 - 399376 + T 70 -5.4 -4.57341 | AATAAAGCATCACTT CCTT GTT AAGG TTTTTAAGAAGACTT murD 401144 - 399936 - | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase TERM 445 400334 - 400350 + g 88 -5.9 -5.53288 | TATTTTGACTGTCTT TAAGCTC TTC GAGTTTA TTTTTTTCCATTACA TERM 446 400515 - 400529 + g 70 -5 -4.6759 | TTTTTCATCTTCATA GCTTAT TTT ATGAGC TTTTGTTGGAGTATT mraY 402205 - 401144 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 447 401769 - 401749 - G 74 -5.3 -4.98758 | AAAAAGGTATAAAAA GTTCCGTGC TAA GCTCTGAAC TAAAATATAAAGGTA TERM 448 401824 - 401849 + g 70 -5.5 -4.2757 | gap 1 TTTGTGCTAAAAGCT TCATTCTTGGAC TAA GTCCT-GAATGA TTATCTTTTTTTAGA TERM 449 402149 - 402137 - G 75 -4.1 -5.33866 | TAAAGCGATAAAAAA TGCAA ATC CTGCA CGCACACTAATATAA TERM 450 402598 - 402579 - g 78 -3 -5.55698 | gap 1 GAGAATTTAAAAAAA CTTTTAGCA AAA TG-TAAAAG AGTGCATATTATAGG TERM 451 403546 - 403535 - g 72 -4.4 -5.06103 | opp_overlap 403535 403530 AGAATGTGCAAAAAA GCAT GATT ATGC TTTTATCATTACAAG pgm 402285 - 403763 + | phosphoglyceromutase fabG 403835 - 404578 + | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 452 404736 - 404712 - g 70 -5.1 -4.52589 | TTGTGGGAGATAAAA TTTATTTTTGC ACA GCAAATACAAA AGGACTTTTTAAGCA Cj0436 404585 - 404995 + | putative pyridoxamine 5'-phosphate oxidase TERM 453 405057 - 405016 - f 75 -9.3 -3.19653 | gap 1, opp_overlap 405016 405017 405021, overlap 405021 405023 405027 405031 TGATAATTTTATTAA CTATATATTAATTAAGATAA ATA TTATCTTAATTAATAT-TAA CTTTTTGTTATTTTT TERM 454 405016 - 405058 + F 88 -5.2 -5.54403 | opp_overlap 405016 405021 405023 405027 405031, overlap 405017 405021 TGATAATTTTATTAA CTATATATTAATTAAGATAA ATA TTATCTTAATTAATATTAAC TTTTTGTTATTTTTT TERM 455 405017 - 405057 + F 82 -8.7 -3.87151 | opp_overlap 405016 405021 405023 405027 405031, overlap 405016 405021 GATAATTTTATTAAC TATATATTAATTAAGATAA ATA TTATCTTAATTAATATTAA CTTTTTGTTATTTTT TERM 456 405053 - 405021 - f 100 -13.9 -2.93901 | opp_overlap 405017 405016 405021, overlap 405016 405023 405027 405031 ATTTTATTAACTATA TATTAATTAAGATAA ATA TTATCTTAATTAATA TTAACTTTTTGTTAT TERM 457 405021 - 405053 + F 100 -13.9 -3.53262 | opp_overlap 405021 405016 405023 405027 405031, overlap 405017 405016 ATTTTATTAACTATA TATTAATTAAGATAA ATA TTATCTTAATTAATA TTAACTTTTTGTTAT TERM 458 405051 - 405023 - f 91 -12.1 -3.02096 | opp_overlap 405021 405017 405016, overlap 405021 405016 405027 405031 TTTATTAACTATATA TTAATTAAGATAA ATA TTATCTTAATTAA TATTAACTTTTTGTT TERM 459 405047 - 405027 - f 75 -8.5 -3.35278 | opp_overlap 405021 405017 405016, overlap 405023 405021 405016 405031 TTAACTATATATTAA TTAAGATAA ATA TTATCTTAA TTAATATTAACTTTT sdhA 405333 - 407168 + | succinate dehydrogenase flavoprotein subunit TERM 460 407260 - 407289 + G 72 -8.1 -3.36283 | overlap 407258 AAAAACTCTGCTCTC TCTTTTGCTTTTT ATCA AAAAAACAAAAGA TATTACTTTAAATTT sdhB 407165 - 408130 + | putative succinate dehydrogenase iron-sulfur protein sdhC 408134 - 408991 + | putative succinate dehydrogenase subunit C TERM 461 408995 - 409013 + T 84 -10.3 -3.65084 | opp_overlap 408995 AAAATTGCATAAAAA CATGGGC AAAAA GCCCATG TTTAAAGATTTAATT TERM 462 409013 - 408995 - T 100 -10.3 -4.90296 | opp_overlap 408995 AAAATTGCATAAAAA CATGGGC AAAAA GCCCATG TTTAAAGATTTAATT Cj0440c 409683 - 409015 - | putative transcriptional regulator acpP 409793 - 410026 + | acyl carrier protein fabF 410053 - 411267 + | 3-oxoacyl-(acyl carrier protein) synthase II TERM 463 411387 - 411376 - g 71 -3 -5.29846 | overlap 411363 AATTTTAAAGAAAAA TCTT GAAA AAGA AATTTCTAAAACTTA accA 411269 - 412207 + | acetyl-CoA carboxylase carboxyltransferase subunit alpha TERM 464 414286 - 414300 + F 74 -7.2 -3.98256 | overlap 414285 GCAATCTAGCTTAAG TTTTGC AGT GCAAAA TCTTTTTGATAAAAA Cj0447 414516 - 415112 + | putative NUDIX hydrolase family protein TERM 465 415108 - 415140 + T 75 -9.3 -3.19482 | opp_overlap 415105 415108 415119, overlap 415107 415109 GAAAATTAAAGATTA TTTAGGTTAAACCTT AAA AAGGTTCAACCTAGG ATTTTAATGATCTGA TERM 466 415109 - 415139 + T 81 -10.6 -2.51207 | opp_overlap 415105 415108 415119, overlap 415108 415107 AAAATTAAAGATTAT TTAGGTTAAACCTT AAA AAGGTTCAACCTAG GATTTTAATGATCTG Cj0448c 416241 - 415144 - | putative MCP-type signal transduction protein TERM 467 415586 - 415574 - G 76 -6.3 -4.57341 | AATTTTTCGGAAAAA CTCAT AAT ATGAG CATTAGAATCTATAG Cj0449c 416466 - 416251 - | conserved hypothetical protein Cj0449c TERM 468 416648 - 416630 - R 77 -7.5 -4.24002 | opp_overlap 416629 416625 416646 TTGGAAATTTTAAAA TTGAGGA ATAAA TCCTCAA AATTATTTAGAATTT TERM 469 416646 - 416665 + r 76 -3.7 -5.48303 | opp_overlap 416630, overlap 416629 416625 TGAGGAATAAATCCT CAAAATT ATTTAG AATTTTG TTTTTTTAGAGTTCT rpmB 416845 - 416651 - | 50S ribosomal protein L28 TERM 470 416756 - 416772 + g 72 -4.5 -4.90079 | TGTTCTGAGATTAGG TAAAAAG CGT CTTTTTG TTTTATTGTTAGCAT rep 416985 - 417632 + | ribulose-phosphate 3-epimerase TERM 471 418086 - 418098 + G 73 -5.5 -4.53685 | overlap 418085 ACAGTATTTTTGTAG CGCAT AAT GTGCG TTTTGATTATAGTTT dnaQ 417629 - 418390 + | DNA polymerase III subunit epsilon thiC 418573 - 419865 + | thiamine biosynthesis protein ThiC Cj0454c 420426 - 419857 - | hypothetical protein TERM 472 420507 - 420529 + r 73 -7 -4.11371 | AGAGTAAACATTTCT CTTGTAGGAG TGA CTCCGATAAG TTTTAAGGAATATTC Cj0455c 420892 - 420548 - | hypothetical protein Cj0456c 421848 - 420889 - | hypothetical protein TERM 473 421217 - 421241 + g 72 -8.7 -2.89822 | opp_overlap 421222, overlap 421212 421222 TTATTTAAGGCTTCA TTGAAGTTATC TAA GGTAACTTCAG TATCATCGTTGTTGT TERM 474 421712 - 421724 + g 77 -4.9 -5.30155 | TCTAATAAATTTTCA CTTTT ATC AAAAG TTTTTTCATTGCTAC Cj0457c 422479 - 421850 - | putative lipoprotein miaB 423764 - 422463 - | putative tRNA 2-methylthioadenosine synthase TERM 475 422616 - 422634 + g 90 -7.6 -5.25154 | opp_overlap 422616 TCTTAATTCTTCAAA TAAAACTT TAA AAGTTTTA TTTTCTTGTTTTTTT TERM 476 422634 - 422616 - G 72 -7.6 -3.57561 | opp_overlap 422616 TCTTAATTCTTCAAA TAAAACTT TAA AAGTTTTA TTTTCTTGTTTTTTT Cj0459c 424027 - 423761 - | hypothetical protein TERM 477 423804 - 423816 + g 72 -7.7 -3.55447 | opp_overlap 423803 423792 TCATTATCATCAAGT CCGTA TTT TACGG TTCTATGATAAATGC TERM 478 425054 - 425034 - g 71 -2 -5.48063 | gap 1 ATTGAAGATAAAAAA GCTATTGTA AGTT TA-AATAGC GAACAAAAAAGCAAA nusA 424131 - 425219 + | transcription elongation factor NusA TERM 479 425222 - 425243 + T 100 -8.9 -5.24129 | opp_overlap 425222 GTTTAAAATTTAAAA TATTTGTGA ATTT TCACAAATA TTTTTTATAAAACCA TERM 480 425243 - 425222 - T 86 -8.9 -4.4267 | opp_overlap 425222 GTTTAAAATTTAAAA TATTTGTGA ATTT TCACAAATA TTTTTTATAAAACCA Cj0461c 426422 - 425235 - | putative MFS (Major Facilitator Superfamily) transport protein TERM 481 426169 - 426155 - G 76 -2.9 -5.57729 | AAATAAGACAAAAAA TAGAA ATTAA TTCTA TGCTAATCATACTGA Cj0462 426496 - 427542 + | hypothetical protein TERM 482 428208 - 428198 - g 70 -5.4 -4.67353 | TGAGTTAGGCAAAAA CATC AAA GATG AAATTTTGGTACGCC Cj0463 427542 - 428762 + | zinc protease-like protein TERM 483 428801 - 428824 + G 75 -7.5 -4.18018 | opp_overlap 428801 428799, overlap 428804 AAAAATTAAAAATTA GAAGTGCTA TTGATT TAGCGCTTC TTTTACCTAAAAAAA TERM 484 428965 - 428975 + G 72 -4 -5.06052 | TGTGAGGAATGGCAA GAAA ATA TTTC TTTTGTGTTTTTTCA TERM 485 430072 - 430087 + G 74 -6.2 -4.41348 | TTATTGAGTGCTAGT GATAAG ATTC CTTATC TTTCTTTAGAGCAGG TERM 486 430573 - 430549 - g 88 -5.8 -5.61824 | opp_overlap 430551, overlap 430551 GAAAAGGTAAAAAAA GATTTGGCAA AAAAA TTGCCAAATT AATGTCCGCCGTACT recG 428752 - 430575 + | ATP-dependent DNA helicase TERM 487 430551 - 430571 + T 73 -8.4 -3.2614 | opp_overlap 430549 430551 AAAGGTAAAAAAAGA TTTGGCAA AAAAA TTGCCAAA TTAATGTCCGCCGTA TERM 488 430571 - 430551 - T 85 -8.4 -4.41528 | opp_overlap 430551, overlap 430549 AAAGGTAAAAAAAGA TTTGGCAA AAAAA TTGCCAAA TTAATGTCCGCCGTA ctb 430955 - 430572 - | group III truncated haemoglobin TERM 489 431309 - 431339 + G 82 -8.6 -3.89346 | opp_overlap 431309 AAGAGGATGGAGAAA TTTTGGAAATTGAT TTT ATTAATTTTCAAAA TTTATGCAGTGAAAA nssR 431050 - 431646 + | transcriptional regulator Cj0467 431662 - 432363 + | amino-acid ABC transporter integral membrane protein Cj0468 432356 - 433012 + | amino-acid ABC transporter integral membrane protein Cj0469 433014 - 433775 + | amino-acid ABC transporter ATP-binding protein TERM 490 433909 - 433893 - f 70 -8.7 -2.62616 | opp_overlap 433884 433905 433908 TCAGTTGGTAGAGCA GCTGCCT TGT AAGCAGC AGGTCGGGGGTTCAA TERM 491 434306 - 434290 - f 82 -10.9 -2.65815 | opp_overlap 434281 CTCAGAGGTAGAGCA CTCCCTT GGT AAGGGAG AGGTCGCGGGTTCAA TERM 492 435200 - 435180 - g 77 -8.3 -3.78962 | overlap 435183 TTAAAGATACTCAAA CAACAACTG TAA CAGGTGTTG AAATGTTCAGAAAAG tuf 434408 - 435607 + | elongation factor Tu TERM 493 435615 - 435597 - f 70 -6.2 -4.07568 | opp_overlap 435597 435612 435613, overlap 435613 GTGTTGTTTCTAAAA TTATTAAA TAA TTTAATAA AGCCAAGTTAAAAGC TERM 494 435612 - 435640 + F 100 -9.7 -5.00884 | opp_overlap 435597 435613 435617, overlap 435613 TTATTAAATAATTTA ATAAAGCCAAGTT AAA AGCTTGGCTTTAA TTTTTTAAGGAAAAT TERM 495 435639 - 435613 - f 87 -11 -3.3458 | opp_overlap 435613 435612, overlap 435597 435617 TATTAAATAATTTAA TAAAGCCAAGTT AAA AGCTTGGCTTTA ATTTTTTAAGGAAAA TERM 496 435613 - 435639 + F 100 -13.2 -3.60048 | opp_overlap 435597 435613 435617, overlap 435612 TATTAAATAATTTAA TAAAGCCAAGTT AAA AGCTTGGCTTTA ATTTTTTAAGGAAAA TERM 497 435635 - 435617 - f 77 -7.4 -4.29977 | opp_overlap 435613 435612, overlap 435613 AAATAATTTAATAAA GCCAAGTT AAA AGCTTGGC TTTAATTTTTTAAGG rpmG 435660 - 435818 + | 50S ribosomal protein L33 TERM 498 435958 - 435934 - g 72 -4.5 -4.88295 | AAATAAATGGAAAAA TTAATAACTTA TTT TAAATTATCAA AAGCCGAATTAAGGA secE 435925 - 436104 + | preprotein translocase subunit SecE TERM 499 436509 - 436497 - g 72 -6.3 -4.24123 | TGAAGAAGGGGAAAA TGTGA GAA TCACA GAAGGGCCATTTGCA TERM 500 436618 - 436642 + G 75 -7.3 -4.18042 | ACTCCAGTGGAGATC TTATATTCTCA AGT TGAGAAAATAA TTTAATTTATATCAA nusG 436114 - 436647 + | transcription antitermination protein NusG rplK 436673 - 437098 + | 50S ribosomal protein L11 TERM 501 437122 - 437100 - f 70 -8.5 -2.56743 | overlap 437099 AAATCGTAGATTAAT CCTTTCACC GCCAA GGTAAAAGG CGGTAGCACTTTAAA rplA 437153 - 437854 + | 50S ribosomal protein L1 TERM 502 437855 - 437874 + F 95 -7.9 -5.09259 | opp_overlap 437855 CTTGATATGAAATAA GAGTTGC TTTTTT GCAACTC TTTTGTTTTAAAATA TERM 503 437874 - 437855 - f 80 -7.9 -4.04806 | opp_overlap 437855 CTTGATATGAAATAA GAGTTGC TTTTTT GCAACTC TTTTGTTTTAAAATA TERM 504 437926 - 437888 - f 84 -9.3 -4.07568 | opp_overlap 437888 437892, overlap 437892 TCTTTTGTTTTAAAA TAAACATTTGAAAAAAT TTTTG ATTTTTTGAAATGTTTA TTTTAGATTGAAGAT TERM 505 437888 - 437926 + F 91 -10 -4.27584 | opp_overlap 437888 437892, overlap 437892 TCTTTTGTTTTAAAA TAAACATTTGAAAAAATT TTT GATTTTTTGAAATGTTTA TTTTAGATTGAAGAT TERM 506 437922 - 437892 - f 73 -5.7 -4.64861 | opp_overlap 437892 437888, overlap 437888 TTGTTTTAAAATAAA CATTTGAAAAAAT TTTTG ATTTTTTGAAATG TTTATTTTAGATTGA TERM 507 437892 - 437922 + F 76 -6.4 -4.72188 | opp_overlap 437888 437892, overlap 437888 TTGTTTTAAAATAAA CATTTGAAAAAATT TTT GATTTTTTGAAATG TTTATTTTAGATTGA rplJ 438006 - 438485 + | 50S ribosomal protein L10 TERM 508 438860 - 438845 - g 72 -4 -5.17576 | GAGGAAGCTAAAAAA CAACTT GAAG AAGCTG GTGCTAAAGTAGAAC rplL 438506 - 438883 + | 50S ribosomal protein L7/L12 TERM 509 438928 - 438905 - f 72 -8.2 -3.47349 | opp_overlap 438905, overlap 438908 GCTTTAAAGTTAGAA GAAGATTTGC CAAG GCAAGTCTTC TTTTTTTATTTTTAC TERM 510 438905 - 438928 + F 100 -10.4 -6.20267 | opp_overlap 438905 438908 GCTTTAAAGTTAGAA GAAGATTTGC CAAG GCAAGTCTTC TTTTTTTATTTTTAC TERM 511 442140 - 442126 - g 79 -5.8 -5.1101 | opp_overlap 442114, overlap 442114 CGATGATTTAAAAAA TCATTT CCA AAATGA GAAGAAAAAATTAAA rpoB 438992 - 443128 + | DNA-directed RNA polymerase subunit beta TERM 512 444323 - 444301 - g 74 -3.4 -5.47218 | opp_overlap 444300 GTTTACCTAAAAAAA TGGCTTTAGA GCT TTTTAAGCCA CATCTTTTAGCTAAG TERM 513 444362 - 444351 - g 72 -4.4 -5.08088 | AAGCTTGAAGAAAAA GGTT ATGC AACC ACAGTAAAACAAGCT TERM 514 444793 - 444808 + G 74 -7.6 -3.77831 | ATGAAGTGATGATGG CACTTG AAAG CAAGTG TTTGGATATTCATGC TERM 515 446850 - 446826 - g 100 -11.5 -4.28361 | GTAATTGCAGGAAAA GGTGATAAAGC TGT GCGTTATCACC TTGAACCAAAAACCG rpoC 443121 - 447674 + | DNA-directed RNA polymerase beta' chain TERM 516 447713 - 447677 - T 74 -4.6 -5.01823 | gap 1, opp_overlap 447685, overlap 447672 AGAACAAGAATAAAA CTCTATT-TTATAGCCC TTCG GGGCTATATTAATACAG TGTATCTAAATCATT TERM 517 447685 - 447704 + T 85 -10.8 -3.18239 | opp_overlap 447672 447677 AATAAAACTCTATTT TATAGCCC TTCG GGGCTATA TTAATACAGTGTATC Cj0480c 448466 - 447705 - | putative transcriptional regulator TERM 518 448549 - 448562 + H 78 -2.5 -5.93809 | ATAATTTTTATTATT TATTA ATTT TAATA TTTTTTTTGTAAAAA dapA 448697 - 449605 + | putative dihydrodipicolinate synthase uxaA' 449602 - 449865 + | putative altronate hydrolase N-terminus TERM 519 450240 - 450224 - g 87 -8.1 -4.72272 | TGGTGGTAGTAAAAA TACCATT GAA AATGGTA TCAAAATAGTCAATG uxaA' 449862 - 451034 + | putative altronate hydrolase C-terminus TERM 520 451253 - 451269 + G 90 -8.1 -4.89063 | ATAGGTTATGCCATT TTTGAAG TGC CTTCAAA TTTATTTTTGCATAA Cj0484 451046 - 452278 + | putative MFS (Major Facilitator Superfamily) transport protein Cj0485 452320 - 453108 + | short chain dehydrogenase TERM 521 454241 - 454254 + G 72 -5.3 -4.73613 | GGTGGAGCAATTATG CCTAT AATT ATAGG TTTTATTAATGATCA Cj0486 453119 - 454375 + | putative sugar transporter TERM 522 454536 - 454581 + G 95 -7.7 -5.34857 | opp_overlap 454541 454542, overlap 454541 454545 AATAGTGATGATTTA GAAAAGGAAGCTTTGTTTGCT TTGG AGCAAAAAAAGCTTCATAATC TTTTGTTTTGTTTAG TERM 523 454576 - 454541 - g 100 -10.6 -4.43844 | opp_overlap 454541 454536 454545, overlap 454542 TGATGATTTAGAAAA GGAAGCTTTGTTTGCT TTGG AGCAAAAAAAGCTTCA TAATCTTTTGTTTTG TERM 524 454541 - 454576 + G 81 -10.6 -3.08124 | opp_overlap 454541 454542, overlap 454536 454545 TGATGATTTAGAAAA GGAAGCTTTGTTTGCT TTGG AGCAAAAAAAGCTTCA TAATCTTTTGTTTTG TERM 525 454575 - 454542 - g 100 -14.1 -3.25824 | opp_overlap 454541 454536 454545, overlap 454541 GATGATTTAGAAAAG GAAGCTTTGTTTGCT TTGG AGCAAAAAAAGCTTC ATAATCTTTTGTTTT TERM 526 454545 - 454572 + G 80 -10 -3.3341 | opp_overlap 454542 454541, overlap 454541 454536 GATTTAGAAAAGGAA GCTTTGTTTGCT TTGG AGCAAAAAAAGC TTCATAATCTTTTGT TERM 527 454867 - 454885 + G 77 -7.6 -4.128 | overlap 454865 AAAAAGATTTAAGTT TTTTGAAA AAA TTTCAAAA TTTATATATCAAGCT Cj0487 454359 - 455129 + | putative amidohydrolase Cj0488 455130 - 455447 + | conserved hypothetical protein Cj0488 ald' 455461 - 455682 + | putative aldehyde dehydrogenase N-terminus TERM 528 455901 - 455912 + G 72 -4.4 -5.1356 | GGTGGAATTTTACCT TGGA ATTT TCCA TTTTTCTTAATCGCA ald' 455718 - 456899 + | putative aldehyde dehydrogenase C-terminus TERM 529 456905 - 456930 + F 74 -7.7 -3.89291 | overlap 456906 TAAACAATGATTTTT ATCCTATCTAA ATTT TTAGATAGGAG TTATTATAATCTTGG TERM 530 456906 - 456929 + F 84 -11.2 -2.92851 | overlap 456905 AAACAATGATTTTTA TCCTATCTAA ATTT TTAGATAGGA GTTATTATAATCTTG TERM 531 457288 - 457269 - g 70 -3.6 -5.10077 | overlap 457271 AAAGAGCGCAAAAAA GTTTTAGA AAAA TCTAAATC TCCAGCGCTTAAAAA rpsL 457227 - 457613 + | 30S ribosomal protein S12 rpsG 457683 - 458153 + | 30S ribosomal protein S7 fusA 458166 - 460241 + | elongation factor G TERM 532 460249 - 460264 + F 93 -10.4 -4.10164 | ACGGTTAAATTTTTA GCGGGA TTTT TCCCGC TTTCTGTCCTCGTAG Cj0494 460364 - 460513 + | putative exporting protein TERM 533 461050 - 461036 - g 88 -8.6 -4.43392 | overlap 461033 461040 461042 TGAAAATGAAAATAA CAAAGC TTT GCTTTG TACATACACATCAAA TERM 534 461067 - 461040 - g 75 -5.6 -4.71463 | overlap 461036 461033 461042 AATGAAAATAACAAA GCTTTGCTTTGT ACAT ACACATCAAAGC AAAAAAGCAAGACTT Cj0495 460519 - 461220 + | putative methyltransferase domain protein TERM 535 461367 - 461355 - gf 70 -6.3 -4.02534 | ATTTAAATTTAGAAA GCAAA GAA TTTGC TGAAAAATACTTGAG Cj0496 461210 - 461584 + | conserved hypothetical protein Cj0496 TERM 536 461966 - 461955 - gf 78 -4.4 -5.4505 | GCTTTTAACAAAAAA GGAT AGTG ATCC TAGAAATTTAGAGCT Cj0497 461557 - 462834 + | putative lipoprotein trpC 462831 - 463607 + | indole-3-glycerol phosphate synthase TERM 537 464058 - 464076 + G 74 -6.1 -4.4267 | opp_overlap 464057 GGCACTAATATAGAG CAAGTTT ATCAA AAACTTG TTTTGGCTTTTAAAA Cj0499 463617 - 464102 + | putative histidine triad (HIT) family protein TERM 538 464660 - 464650 - g 70 -5.4 -4.68424 | opp_overlap 464652 CAACCTACGCAAAAA GCTT TTG AAGC AGAACTTTTTCACAA TERM 539 464716 - 464694 - g 83 -7.8 -4.54477 | opp_overlap 464680 464679, overlap 464679 464711 TCAAAATTTAGAAAA TTTTGCTTTC ATA GAAAGCGAAA GTCGCAAAATAGGGG TERM 540 464721 - 464711 - g 71 -6.8 -4.03234 | overlap 464694 TTGCTTTCATAGAAA GCGA AAG TCGC AAAATAGGGGATATT Cj0500 464092 - 465090 + | tRNA 2-selenouridine synthase hemH 467571 - 466660 - | ferrochelatase Cj0504c 468434 - 467568 - | putative oxidoreductase Cj0505c 469512 - 468439 - | putative aminotransferase (degT family). Functional classification-Misc TERM 541 471675 - 471693 + G 80 -9 -3.86897 | TATTGAAGCTGTGGT TTCTAAAG CGG CTTTAGAA TTTGTAAAAAATCAA alaS 469627 - 472155 + | alanyl-tRNA synthetase TERM 542 472189 - 472231 + G 100 -9.4 -4.51174 | opp_overlap 472188 472193 GTTCCATTTCAAGAG CTAACTTGCTTAAAACCG CAAAGAT TGATTTTAGGCAAGTTAG TTTTGATTATGATGA maf 472155 - 472706 + | Maf-like protein TERM 543 473054 - 473040 - g 74 -8.6 -3.23708 | opp_overlap 473039, overlap 473038 GTGGTGGAAAAACCA TGGAAG GAG CTTCCA CTCTTACTCAGCAAT pbpA 472703 - 474634 + | penicillin-binding protein TERM 544 474622 - 474667 + T 81 -5.2 -5.22794 | gap 2, opp_overlap 474629 474637 474640, overlap 474624 474629 474637 ATTTAATGAAAGCGA GATTA-T-ATTTTGAAAGTAGA AAGA TCTACTTTCAAAATGATTAAGC TTTTTTGATGATTAT TERM 545 474658 - 474629 - T 100 -13.9 -2.88236 | opp_overlap 474624 474622 474629 474637, overlap 474637 474640 GAAAGCGAGATTATA TTTTGAAAGTAGA AAGA TCTACTTTCAAAA TGATTAAGCTTTTTT TERM 546 474629 - 474658 + T 100 -13.9 -2.80411 | opp_overlap 474629 474637 474640, overlap 474624 474622 474637 GAAAGCGAGATTATA TTTTGAAAGTAGA AAGA TCTACTTTCAAAA TGATTAAGCTTTTTT clpB 477235 - 474662 - | ATP-dependent Clp protease ATP-binding subunit Cj0510c 477637 - 477347 - | conserved hypothetical protein Cj0510c Cj0511 477755 - 479089 + | putative secreted protease TERM 547 479296 - 479282 - g 78 -4.2 -5.40072 | opp_overlap 479282 TTTGCTTGAAAAAAA TGGGAT TAA AACCCA TTTGGTAGAAATTAT purC 479091 - 479801 + | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 548 479956 - 479940 - g 72 -5.2 -4.76478 | overlap 479934 CAAAACAAATCAAAA TTTCTC TTGAT GAGAAA GATGAAAAATTAGCC purS 479810 - 480055 + | phosphoribosylformylglycinamidine (FGAM) synthase purQ 480057 - 480728 + | phosphoribosylformylglycinamidine synthase subunit I Cj0515 480700 - 481896 + | putative periplasmic protein TERM 549 482496 - 482466 - g 81 -8.5 -4.21194 | GCGGAGTACTTAAAA TCATTTGTATGGA TTTAG TCGATACAAATGA TGAAAAATGGCTTGA plsC 481877 - 482569 + | putative 1-acyl-SN-glycerol-3-phosphate acyltransferase TERM 550 482749 - 482777 + G 81 -6.1 -5.03747 | opp_overlap 482736 AATAAAGGTTTATCT CCTTTACTTAAAA GCT TTATAAGTACAGG TTTTTTAGGAGCTTT crcB 482563 - 482931 + | CrcB protein homolog TERM 551 483430 - 483414 - g 79 -5.2 -5.26875 | opp_overlap 483414 483423 GTTTTAAGTAAAAAA GCTTTA GATGA TAAAGC TTATCTTTGGAGTTC TERM 552 483807 - 483817 + G 70 -4 -4.91852 | opp_overlap 483807 AGTGAAGGAAAATTA GAAT ACA ATTC TTTATTTTTCATACC htpG 483003 - 484829 + | heat shock protein 90 TERM 553 484896 - 484873 - g 77 -8.2 -3.79505 | opp_overlap 484870 AAAGCAAGATTTAAA CGCATATCAA ATTT TTGATGTGCG TACTCCTTTAGAATG Cj0519 484826 - 485143 + | putative rhodanese-like domain protein Cj0520 485143 - 485577 + | hypothetical protein Cj0522 485698 - 486201 + | putative Na+/Pi cotransporter protein Cj0523 486213 - 486488 + | hypothetical protein Cj0524 486642 - 487343 + | hypothetical protein pbpB 489148 - 487340 - | putative penicillin-binding protein TERM 554 487671 - 487698 + g 88 -3.4 -6.12458 | overlap 487672 ATAAGAACATTTTGC ATCGTTTTAGCG GCTT CGCTAGAAAGAA TTTTTTCTTTTTTTA TERM 555 487672 - 487697 + g 74 -6.9 -4.21984 | overlap 487671 TAAGAACATTTTGCA TCGTTTTAGCG GCTT CGCTAGAAAGA ATTTTTTCTTTTTTT fliE 489451 - 489155 - | flagellar hook-basal body protein FliE flgC 489952 - 489458 - | flagellar basal body rod protein FlgC flgB 490393 - 489962 - | flagellar basal body rod protein FlgB Cj0529c 491475 - 490474 - | putative aminodeoxychorismate lyase family protein TERM 556 490613 - 490593 - GH 86 -6.9 -4.98531 | TCTTTAAAGGAAAAA TAGCTGC ACGAATA GCAGCTA AAGAAACATTACAAA TERM 557 491015 - 490998 - GH 85 -5.6 -5.40072 | TTTCTGGTAAAAAAA CTCCTT CATCAT AAGGAG CTTGAGCTTGAAATT TERM 558 491837 - 491825 - gH 77 -4.9 -5.21709 | opp_overlap 491825 GCTGATATTAAAAAA CTTTT ATT AAAAG ATTATGATTTAAGTA TERM 559 492602 - 492584 - gH 77 -7.6 -4.13304 | overlap 492572 AAAGCATTTGTAAAA TTAAATCA AAA TGATTTAA ATATAGAAAATGCCA Cj0530 491390 - 493960 + | putative periplasmic protein TERM 560 494003 - 493964 - fH 77 -6 -4.88407 | opp_overlap 493957 493965 493966 493972, overlap 493957 493966 TTACTTAATTAAAAA TATTTAAAGTTTGTTTGA AAAC TAAAACAAACTTTAAACT TACTCTTGCATTTTT TERM 561 493966 - 494001 + FH 82 -10.8 -2.63637 | opp_overlap 493957 493964 493966, overlap 493957 493965 493972 ACTTAATTAAAAATA TTTAAAGTTTGTTTGA AAAC TAAAACAAACTTTAAA CTTACTCTTGCATTT TERM 562 494001 - 493966 - fH 93 -10.8 -4.06004 | opp_overlap 493957 493966 493965 493972, overlap 493957 493964 ACTTAATTAAAAATA TTTAAAGTTTGTTTGA AAAC TAAAACAAACTTTAAA CTTACTCTTGCATTT icd 494077 - 496281 + | isocitrate dehydrogenase TERM 563 496561 - 496575 + G 70 -8.6 -2.64099 | opp_overlap 496559 496561, overlap 496560 TGCTTCAGTTAAATA CAAGCA TTA TGCTTG ATTGTGCTAAAAAAA TERM 564 496575 - 496561 - g 76 -8.6 -3.40597 | opp_overlap 496561 496560, overlap 496559 TGCTTCAGTTAAATA CAAGCA TTA TGCTTG ATTGTGCTAAAAAAA mdh 496278 - 497180 + | malate dehydrogenase sucC 497181 - 498344 + | succinyl-coA synthetase beta chain sucD 498354 - 499223 + | succinyl-coA synthetase alpha chain TERM 565 499225 - 499213 - f 70 -3.5 -5.25805 | AAGAAATTCAAAAAA TATTA GGT TAATA AAGGAAAAAAACATG TERM 566 499321 - 499331 + G 81 -8.2 -4.2349 | TTGTGTTAGCTATTG CCCC GCT GGGG TTTTAGCTATGCGCG oorD 499238 - 499549 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorD TERM 567 499800 - 499774 - g 70 -6.5 -4.08945 | opp_overlap 499774 499773 ATGAGTGGGGTAAAA TCCATGACTGC AAGTA GCGGTCCTGGA ATTTCTTTAAAAGCA TERM 568 499774 - 499800 + G 74 -8.7 -3.24488 | opp_overlap 499774, overlap 499773 ATGAGTGGGGTAAAA TCCATGACTGC AAGTA GCGGTCCTGGA ATTTCTTTAAAAGCA TERM 569 500593 - 500603 + G 80 -6.8 -4.84642 | opp_overlap 500592 ATTGAAAGAGTAACT TCGC GTC GCGA TTTTATTAGTTTGCA oorA 499558 - 500682 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorA oorB 500683 - 501528 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorB oorC 501525 - 502082 + | 2-oxoglutarate-acceptor oxidoreductase subunit OorC TERM 570 502082 - 502108 + F 83 -11 -2.64938 | opp_overlap 502083 502087, overlap 502087 AAAACCACATTCATA ATAAATTCCGCA TCA TGCGGAATTTAA CTTCTAAAATTTTAC TERM 571 502107 - 502083 - f 100 -14.5 -3.41414 | opp_overlap 502082 502087, overlap 502087 AAACCACATTCATAA TAAATTCCGCA TCA TGCGGAATTTA ACTTCTAAAATTTTA TERM 572 502087 - 502103 + F 89 -10.9 -3.80893 | opp_overlap 502083 502087, overlap 502082 CACATTCATAATAAA TTCCGCA TCA TGCGGAA TTTAACTTCTAAAAT TERM 573 502103 - 502087 - f 93 -10.9 -4.34488 | opp_overlap 502087 502082, overlap 502083 CACATTCATAATAAA TTCCGCA TCA TGCGGAA TTTAACTTCTAAAAT Cj0539 502221 - 502484 + | hypothetical protein Cj0540 502487 - 503023 + | putative exporting protein TERM 574 503821 - 503808 - g 79 -5.3 -5.29445 | opp_overlap 503806 503808 TTTGAAGAACAAAAA GCTTT AGAA AAAGC TATTTTAGAAGCTAA Cj0541 503037 - 503930 + | polyprenyl synthetase TERM 575 504200 - 504221 + G 90 -7.3 -5.36441 | opp_overlap 504204 GCTGATATTTTTGAA GATAGTGGA GCAA TCCACCATC TTTTTTCTGTAGCAA hemA 503930 - 505228 + | glutamyl-tRNA reductase TERM 576 506521 - 506510 - g 70 -5.8 -4.34402 | opp_overlap 506509 TTTCTTAGATGAAAA TGGC AAAA GCCA GCCTTTTTATATGGG proS 505212 - 506921 + | prolyl-tRNA synthetase TERM 577 507015 - 507032 + G 82 -7.1 -4.75404 | GTAATTTTTTATTTT TCATACT TTTG AGTATGA TTTTTGGTGCGGTTT Cj0544 506918 - 507307 + | putative integral memnbrane protein hemC 507304 - 508227 + | porphobilinogen deaminase TERM 578 509135 - 509125 - g 72 -2.6 -5.42265 | TGAAAGTAGAAAAAA TTTA TGC TAAA AAAGATGCGATCTAT ubiD 508224 - 510026 + | putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase flaG 510184 - 510549 + | flagellar protein FlaG TERM 579 510710 - 510696 - g 72 -2.9 -5.39681 | ACAACCAAACAAAAA GATTT AACAG AAATC AAAACTAAATTACTA fliD 510552 - 512480 + | flagellar capping protein fliS 512492 - 512878 + | flagellar protein FliS TERM 580 513112 - 513084 - g 76 -2.6 -5.64328 | gap 1, overlap 513085 513086 AAGAAAAAAACAAAA GC-TGTTGAAATT CAAA AATTTCAAAAAGC GTTGACATATTTTAA Cj0550 512859 - 513134 + | hypothetical protein efp 513566 - 514135 + | elongation factor P Cj0552 514295 - 514987 + | hypothetical protein TERM 581 515506 - 515520 + G 78 -4.2 -5.38054 | TACCGCAAATTTTGG CTACAC TTG GGGTAG TTTTTGTTTCTACAG Cj0553 514974 - 515927 + | putative integral membrane protein TERM 582 516567 - 516586 + G 71 -7.2 -3.73042 | GCTTTAGAGCCTTGT GGAGATGA GTTT TTATCTCC TGTTTTGATGGAAGC Cj0554 515937 - 516941 + | hypothetical protein TERM 583 518150 - 518161 + G 74 -2.2 -5.64304 | CAAGCAGTGGATTAA GCGA GGCA TTGC TTTTTTCTTGTATTG Cj0555 517060 - 518352 + | putative dicarboxylate carrier protein MatC Cj0556 518363 - 519160 + | putative amidohydrolase family protein Cj0557c 520242 - 519157 - | putative integral membrane protein proA 521471 - 520239 - | gamma-glutamyl phosphate reductase Cj0559 521542 - 522477 + | putative pyridine nucleotide-disulphide oxidoreductase TERM 584 522474 - 522503 + F 95 -9.5 -4.6038 | opp_overlap 522480, overlap 522480 522493 AATTCTTTCTGTGCT TTAAAATTTAGCC TTTG GGCTAAATTTTTA TTTTAGTTTAATCTA TERM 585 522497 - 522480 - f 83 -8.5 -4.07568 | opp_overlap 522474 522480 522493 TTCTGTGCTTTAAAA TTTAGCC TTTG GGCTAAA TTTTTATTTTAGTTT TERM 586 522480 - 522497 + F 100 -8.5 -5.56372 | opp_overlap 522480, overlap 522474 522493 TTCTGTGCTTTAAAA TTTAGCC TTTG GGCTAAA TTTTTATTTTAGTTT TERM 587 522723 - 522739 + G 70 -3.7 -5.09221 | TGCCGTGCCAAATGT TATAAGC ATG GCTTTTA TTTCTTTTTATTATA TERM 588 523279 - 523289 + G 70 -5.4 -4.56978 | TTAGGTGGTATTTTT GGAA TTT TTCC TTTCTTGTTTCAAAA Cj0560 522658 - 523986 + | putative MATE family transport protein TERM 589 523972 - 523996 + T 100 -8.7 -5.28315 | opp_overlap 523972 AAAAGAATTTTTAAA GATCTATCTTT ATA GGAGATAGATC TTTTTTAAATTTTAT TERM 590 523996 - 523972 - T 72 -7.3 -3.65722 | opp_overlap 523972 AAAAGAATTTTTAAA GATCTATCT TTATAGG AGATAGATC TTTTTTAAATTTTAT Cj0561c 524963 - 524034 - | putative periplasmic protein TERM 591 525615 - 525601 - g 76 -2.9 -5.54079 | opp_overlap 525601 TTAAAAAGCAAAAAA CTTTA GAAAA TAAAG GTATTATAGGGCTTG dnaB 525117 - 526493 + | replicative DNA helicase Cj0563 526556 - 527158 + | hypothetical protein Cj0564 527149 - 527355 + | putative integral membrane protein TERM 592 527817 - 527803 - f 70 -3.6 -5.17054 | AGAAGAGTTAAAAAA TTCTCA AGA TGAAAA TACATTAAGAGAACT TERM 593 529341 - 529359 + G 76 -7.6 -3.90588 | opp_overlap 529336 529332 529341 AAACAATTACCCAAA TTATTGAT ATC ATCAATAA TTTAATTGAGCAATG TERM 594 529359 - 529341 - g 74 -7.6 -3.74658 | opp_overlap 529341, overlap 529336 529332 AAACAATTACCCAAA TTATTGAT ATC ATCAATAA TTTAATTGAGCAATG TERM 595 529607 - 529623 + G 74 -2.3 -5.53288 | CTTTCTTCGTCGGAT TTAGAAA AAC TTTCAAA TTTTTTTAAATTAAA Cj0566 528182 - 529648 + | hypothetical protein TERM 596 529706 - 529694 - g 88 -7.7 -4.91977 | CACCAAAATAGAAAA GGCTA TAT TAGCC GAAAAACAACAAATC Cj0567 529659 - 529772 + | hypothetical protein TERM 597 529827 - 529817 - f 79 -4 -5.74122 | TATCACAGAAAAAAA TCAA AAT TTGA GCAATATAGAATATA Cj0568 529974 - 530255 + | hypothetical protein TERM 598 530594 - 530607 + G 83 -6.7 -5.0809 | AAGGAAAGAGGTGCA GGCAT TCCT ATGCC TTTTTATAATTTATT Cj0569 530261 - 531130 + | hypothetical protein TERM 599 531925 - 531941 + G 71 -2.3 -5.40072 | opp_overlap 531925 AATGTCCAAGGCAAA TCTTTTA TAC TTAAAGA TTTTTTTACCCAAAA Cj0570 531139 - 532206 + | putative ATP/GTP binding protein Cj0571 532203 - 533075 + | putative transcriptional regulator TERM 600 533122 - 533134 + F 75 -9.1 -3.28712 | GGGGAGATTTGAACT CCCGA CCT TCGGG TTATGAGCCCGACGA TERM 601 534270 - 534260 - g 72 -4 -5.10767 | TACTCAATACAAAAA CTAT GGT ATAG GAGCACAGATTTTAA ribA 533373 - 534392 + | bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein Cj0573 534404 - 534847 + | putative GatB/Yqey family protein TERM 602 535457 - 535440 - g 71 -7.1 -3.76839 | TAAGGGTAACTCAAA GCAAATT AAAA AATTTGC AGAGCTTTTAAAAGA ilvI 534865 - 536565 + | acetolactate synthase 3 catalytic subunit ilvH 536562 - 537026 + | acetolactate synthase 3 regulatory subunit TERM 603 537232 - 537211 - g 78 -6.7 -4.52347 | TAAAGAATATGAAAA TTTAGTACC TAAA GATACTAAA GCTTTGATTACTCAA lpxD 537023 - 537988 + | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 604 537995 - 538036 + T 70 -8.2 -3.21938 | overlap 537996 538026 CAAGATTAGCATCGC ATCGCCATAAGAGTAAAA GCGATA TTTTTCTTTTATGGCGAG TTCATAAAGTTTTAA TERM 605 537996 - 538035 + T 87 -11.7 -2.52681 | overlap 537995 538026 AAGATTAGCATCGCA TCGCCATAAGAGTAAAA GCGATA TTTTTCTTTTATGGCGA GTTCATAAAGTTTTA queA 539005 - 537977 - | S-adenosylmethionine:tRNA ribosyltransferase-isomerase tatC 539735 - 538998 - | sec-independant protein translocase Cj0579c 540144 - 539728 - | sec-independent translocase TERM 606 539844 - 539864 + g 73 -5.5 -4.54449 | TATCATCTCTGCTAT CAAAGGT TAAATCT ACCTTTG TTTTATCTAAAATAT Cj0580c 541269 - 540202 - | coproporphyrinogen III oxidase TERM 607 540645 - 540666 + g 72 -4.5 -5.00616 | ATTTCATTAAATTAG GAGCATTTT TTTT GAAATGTTC TTTTTTAGCAAAGGC TERM 608 541789 - 541762 - g 100 -11.6 -4.42806 | opp_overlap 541760 TGAGTGTTAAACAAA TTTTTGAAATGA TTAA TCATTTCAAAAA AAATATTTATGTTAG Cj0581 541371 - 541841 + | dinucleoside polyphosphate hydrolase TERM 609 542437 - 542423 - g 71 -5.8 -4.45577 | opp_overlap 542409 542423, overlap 542409 AGAAATTGGATAAAA TTTCTT ATG AAGAAA TGCTTGAACTTGCAA TERM 610 542513 - 542503 - g 72 -2.6 -5.43866 | opp_overlap 542503, overlap 542504 GAACTTGCAAAAAAA TTAA ATG TTAA TTTAGTAACTAGAAG TERM 611 542866 - 542822 - g 70 -5.2 -4.66833 | TTTTAAGCTCAAAAA CAACTATAGAAAGTGATAGT GCTGT ACTAAAAGTTTCTATAGTCG GCGTAGGTATGAAAT lysC 541843 - 543045 + | aspartate kinase Cj0583 543046 - 543582 + | hypothetical protein Cj0584 543588 - 544187 + | DNA polymerase III subunit delta' TERM 612 544503 - 544520 + G 77 -5.7 -5.00616 | ACTTAAAAATTTGGC TCTTTTT TTGC AAAAAGA TTTTTTAAAACCGAA folP 544189 - 545331 + | dihydropteroate synthase TERM 613 546579 - 546608 + G 72 -4.5 -4.99043 | gap 1, opp_overlap 546585, overlap 546583 546607 TCAAAATATAGATTG TGAA-GATAGACTT GTA AATTCTATCATTCA TTTTGTTTCTAAAAA ligA 545332 - 547275 + | NAD-dependent DNA ligase LigA TERM 614 547630 - 547613 - g 72 -2.7 -5.42862 | opp_overlap 547616, overlap 547616 ATATTTTTAAAAAAA GAATTGC ATTT GCAATTT GTAGATAATGCTTAT TERM 615 548150 - 548132 - g 100 -9 -5.63236 | opp_overlap 548134, overlap 548147 ATTCAAAAAGAAAAA GATCTTTT TGA AAAAGATC TTAAAGATCTTAGAG TERM 616 548159 - 548147 - g 76 -6.3 -4.57073 | opp_overlap 548134, overlap 548132 GATCTTTTTGAAAAA GATCT TAA AGATC TTAGAGAAATTTTTA Cj0587 547256 - 548260 + | putative integral membrane protein tlyA 548257 - 549018 + | putative haemolysin ribF 548984 - 549838 + | bifunctional riboflavin kinase/FMN adenylyltransferase Cj0590 549825 - 550535 + | putative SAM-dependent methyltransferase Cj0591c 550746 - 550525 - | putative lipoprotein Cj0592c 551177 - 550743 - | putative periplasmic protein TERM 617 550993 - 551009 + g 74 -6.6 -4.31379 | TTACCCTCTTCATTT GTTGGT TTAAC ACCAAC TTTTAATGCATTAAT Cj0593c 551867 - 551235 - | putative integral membrane protein Cj0594c 552528 - 551878 - | putative DNA/RNA non-specific endonuclease nth 553151 - 552525 - | endonuclease III TERM 618 553791 - 553774 - g 72 -4.1 -5.03314 | opp_overlap 553774 TCCAGGTTCAAAAAA CCAAGGT GGTG AGCTTGG TTGGTTTGATCAATC peb4cbf2 553232 - 554053 + | major antigenic peptide PEB-cell binding factor fba 554053 - 555117 + | fructose-bisphosphate aldolase TERM 619 555109 - 555139 + F 86 -7 -5.08255 | opp_overlap 555114, overlap 555114 TTAAACTGTATAAAC AAAAACTAAGCATT TTA AAAGCTTAGTTTTA TTTTGTTTTAAAAAT TERM 620 555114 - 555134 + F 95 -6.9 -5.40279 | opp_overlap 555114, overlap 555109 CTGTATAAACAAAAA CTAAGCATT TTA AAAGCTTAG TTTTATTTTGTTTTA TERM 621 555134 - 555114 - f 95 -6.9 -5.38054 | opp_overlap 555114 555109 CTGTATAAACAAAAA CTAAGCATT TTA AAAGCTTAG TTTTATTTTGTTTTA Cj0598 555212 - 556654 + | hypothetical protein Cj0599 556651 - 557604 + | putative OmpA family membrane protein TERM 622 557784 - 557766 - g 73 -8.9 -3.19389 | overlap 557773 TAAGTTATGGAGGAA GCCAAAG TAATG CTTTGGC GGCATTAAGTATTTT TERM 623 558429 - 558408 - g 78 -10.3 -2.60797 | opp_overlap 558408, overlap 558407 TTTATATACATCAAG GTGGAATTT TAGG AAATTCCAC TATGTTAGAGAGATA TERM 624 558408 - 558429 + G 81 -10.3 -3.07013 | opp_overlap 558407 558408 TTTATATACATCAAG GTGGAATTT TAGG AAATTCCAC TATGTTAGAGAGATA Cj0600 557591 - 558466 + | hypothetical protein Cj0601c 559801 - 558458 - | putative sodium-dependent transmembrane transport protein TERM 625 558498 - 558484 - G 79 -5.8 -5.03994 | TTCCATAGATAAAAA TGATTA AAA TAATCA AAGGTACTATATATT TERM 626 559876 - 559853 - R 75 -9.8 -2.6369 | opp_overlap 559855 559858 559871, overlap 559852 559851 559855 559858 ATAACTTTAAAAACT TATAAGCTAT CCAT ATAGCTTATA TCGTAAGTATTTTTT Cj0602c 560520 - 559852 - | MOSC-domain containing protein dsbD 562220 - 560517 - | putative thiol:disulphide interchange protein TERM 627 561610 - 561589 - G 83 -3.1 -5.82281 | opp_overlap 561595 AAAGAGAGAAAAAAA CTATATTTT TTTG AAAATTTAG CATTACTTTTTGCTA TERM 628 561947 - 561971 + g 72 -5.1 -4.77036 | opp_overlap 561948 561952, overlap 561948 CAAAGCGCTCTAGTA ATAAATTTGGC AAA GCTAAATTTAA TTTTTGATAATAAAC TERM 629 561948 - 561970 + g 76 -8.6 -3.4574 | opp_overlap 561948 561952, overlap 561947 AAAGCGCTCTAGTAA TAAATTTGGC AAA GCTAAATTTA ATTTTTGATAATAAA TERM 630 562853 - 562840 - g 91 -5.3 -5.88471 | GACGAGCAAAAAAAA CGTTT TGAA AAACG CCGAAGCGATCCACT Cj0604 562315 - 563196 + | putative polyphosphate kinase Cj0605 563205 - 564395 + | putative amidohydrolase Cj0606 564474 - 565646 + | putative secretion protein HlyD TERM 631 566872 - 566851 - g 80 -2.3 -5.81032 | overlap 566852 TAATGCTAAAAAAAA TCTTTTTCC TGAT GAAAAAAGT GAAAATATTTTAGGT Cj0607 565646 - 567571 + | ABC-type transmembrane transport protein Cj0608 567573 - 568943 + | putative outer membrane efflux protein Cj0609c 570124 - 568946 - | possible periplasmic protein TERM 632 569265 - 569281 + g 74 -2.4 -5.61881 | ATACTAATCCATTTT TTTAAA TTGTT TTTAAA TTTTTGTTTTTCAAA TERM 633 569582 - 569608 + g 71 -8.8 -2.73459 | overlap 569595 569599 TAACTCATAGCTTTG GTTTTTTGCATC TTT GATGCTAAAAGC ATTGGTATTTTGCTT TERM 634 569962 - 569974 + g 76 -2.7 -5.53991 | CTAATTTTTTTTCTA GATTT TTA AGATC TTTTTTTGATACATA Cj0610c 571121 - 570111 - | putative periplasmic protein TERM 635 570972 - 570986 + g 91 -10 -4.10429 | overlap 570985 TTCTAATTTAATTTT GAAGCC ATT GGCTTC TTTTAAAAGATCATT Cj0611c 572498 - 571122 - | putative acyltransferase family protein TERM 636 571685 - 571701 + g 70 -3.7 -5.02074 | TGATATGCCATCTAG CCCAAAA ATC TTTTAGG TTTTTTGCAAGATAA cft 573044 - 572541 - | ferritin TERM 637 573387 - 573372 - g 72 -2.6 -5.36364 | gap 1 TCAAAAATACAAAAA CTC-CTA TAG TAGAGAG CTTGGGAACAGGGGG TERM 638 573629 - 573615 - g 72 -5 -4.73614 | CATTAGCAAAAGAAA TTCCAC AAA ATGGAA AACTTATACCAAATC pstS 573224 - 574219 + | putative periplasmic phosphate binding protein TERM 639 574275 - 574313 + G 100 -17.8 -4.41895 | overlap 574306 TTTTTTTATGTGCTT TTGTAAGCGTGATAGTAA GTT TTGCTATCATGCTTACAA TTTTAATTGAAGCTT TERM 640 574385 - 574395 + G 76 -6.8 -4.42386 | TCAAGTCAGTGGGCA GCTG ATG CAGC TTTTATGAATGCAGA pstC 574229 - 575143 + | putative phosphate transport system permease protein TERM 641 575162 - 575149 - g 73 -3.9 -5.19261 | AAATTTATGAAAAAA CTTTT TAAA AAAAG ACAAAAAGCTTCAAA TERM 642 575199 - 575170 - g 72 -2.9 -5.44837 | opp_overlap 575178, overlap 575171 575172 AAAAAAAGACAAAAA GCTTCAAAGTCTT TTAA AAGACTTTGTAAA ATGGGGCTTTATATT TERM 643 575538 - 575553 + G 71 -7.6 -3.41114 | opp_overlap 575524 575537 575536, overlap 575537 TGGGGACTCAAAATC TCCTGA AAAT TCAGGA ATTTTATCTTCAGTT pstA 575140 - 576228 + | putative phosphate transport system permease protein TERM 644 576340 - 576352 + G 75 -4.8 -5.10077 | overlap 576336 TCGGTGCTTCAGGAT GTGG TAAAT CCAC TTTTTTGCGCTGTTT pstB 576225 - 576965 + | phosphate transport ATP-binding protein Cj0617 577027 - 577638 + | hypothetical protein Cj0618 577608 - 578255 + | hypothetical protein Cj0619 578345 - 579661 + | putative MATE family transport protein Cj0620 579637 - 580284 + | conserved hypothetical protein Cj0620 TERM 645 581443 - 581429 - g 70 -5.8 -4.34402 | opp_overlap 581428 TCTTTTAGATGAAAA TTTTGA GCT TCAAAA CAATTTTTATTCCTT TERM 646 581746 - 581732 - g 72 -4.2 -5.10968 | ATTAAGAGAGAAAAA GCAAAG TGA CTTAGC GCTTATAAGTGGCTC Cj0621 580326 - 581846 + | hypothetical protein TERM 647 581905 - 581920 + G 83 -7.6 -4.57569 | opp_overlap 581905 581915 TTAGTTTATGAACTA GCTTTG AAAT CAAAGC TTTTTGGAGAAGTAA TERM 648 582188 - 582166 - g 72 -4.3 -5.07053 | AAGGAGTGTAAAAAA GAATTTTTT GATGA AAAAAATCC ACGCTTTTTGTATCC TERM 649 582852 - 582875 + G 75 -4 -5.33026 | TGAGTTTAATTTGTG TAAAAAACTT GATA AAGTTTTTGA TTTTTATTTGGATTA hypF 581827 - 584016 + | carbamoyltransferase hypB 584094 - 584837 + | hydrogenase isoenzymes formation protein hypC 584837 - 585118 + | hydrogenase isoenzymes formation protein TERM 650 585280 - 585291 + G 70 -5.8 -4.27117 | overlap 585277 ACTTTATCCATGGGC CAGG ATGT CCTG TTTGTGTTATGCCAA hypD 585102 - 586193 + | hydrogenase isoenzymes formation protein TERM 651 586914 - 586899 - g 74 -3.3 -5.4505 | overlap 586873 TCTTTGAAGAAAAAA TCATC GTTCAA GATGA GGTTTTAGGACTTTG hypE 586190 - 587164 + | hydrogenase isoenzymes formation protein hypA 587164 - 587508 + | hydrogenase expression/formation protein TERM 652 587672 - 587633 - f 93 -4.8 -6.11019 | gap 1, opp_overlap 587635, overlap 587635 AAAAACTAAAAAAAA TATATTTTTAAAT-TTATT TTA AATAAAATTTAAAAATATT ATAAAAATATTGATA TERM 653 587670 - 587635 - f 81 -7.4 -4.63519 | gap 1, opp_overlap 587635, overlap 587633 AAACTAAAAAAAATA TATTTTTAAAT-TTATT TTA AATAAAATTTAAAAATA TTATAAAAATATTGA TERM 654 591038 - 591026 - g 72 -6.3 -4.25104 | opp_overlap 591025 591016 TTTTCTCTACTAAAA CAAGT CTT ACTTG GTTTAGAGATTGGTT Cj0628 587868 - 591303 + | putative lipoprotein TERM 655 591359 - 591392 + T 95 -11.3 -3.95535 | opp_overlap 591359 591358, overlap 591357 CTACTTGTTAAAAAT TTCATCCTGATAATT TTAA AATTATTAGGATGGA TGTTTTTAAGGTTAT Cj0630c 592502 - 591537 - | DNA polymerase III subunit delta TERM 656 592339 - 592324 - G 88 -7.6 -5.00616 | opp_overlap 592323 CCTGCGCTTAAAAAA TCACTC GCAC GAGTGA AGTTGTATTCTTCAA Cj0631c 594429 - 592495 - | putative ribonuclease TERM 657 595520 - 595500 - g 86 -6.1 -5.36441 | opp_overlap 595502 595505, overlap 595502 595505 CTTTGATAGAAAAAA CAGGACGCA ATT TGCGTGCTA TGATGCCTTGGATCA TERM 658 595518 - 595502 - g 72 -6.5 -4.31943 | opp_overlap 595502 595505, overlap 595500 595505 TTGATAGAAAAAACA GGACGCA ATT TGCGTGC TATGATGCCTTGGAT ilvC 594548 - 595570 + | ketol-acid reductoisomerase TERM 659 595651 - 595685 + G 71 -8.8 -2.88802 | overlap 595650 595647 TTGCATAGCTTTAGC TTTGGGAATTTTAGTA AAA TATCAAAATTCCCAAG ATGTTTCTTCTGTTA Cj0633 595574 - 596656 + | putative periplasmic protein dprA 596646 - 597419 + | DNA processing protein A Cj0635 597416 - 597799 + | Holliday junction resolvase-like protein TERM 660 597947 - 597935 - g 70 -3.5 -5.08255 | opp_overlap 597922, overlap 597922 ATTTTTAAAACAAAA TTTAA AAT TTAAA AAGATCAATGTTTAT Cj0636 597828 - 598667 + | NOL1/NOP2/sun family protein TERM 661 598805 - 598784 - T 90 -7.3 -5.08255 | ACTTTGAAAAGAAAA TCACAGCGT GAAA AGGCTGTGA ATAAAGTTGAAATTT mrsA 599340 - 598843 - | methionine sulfoxide reductase A TERM 662 599011 - 599037 + g 71 -6.8 -3.98107 | TTTTTGCTGTTCTTC GATGAAATTTTG AGC TAAAATTTTATC TTCTTCATTTTCGTA ppa 599899 - 599381 - | inorganic pyrophosphatase TERM 663 599485 - 599495 + g 75 -4 -5.19819 | opp_overlap 599485, overlap 599487 CTAAAATTTTATAAG TTTC AAA GAAA TTTTTGATTTTATTT adk 600487 - 599909 - | adenylate kinase aspS 602235 - 600484 - | aspartyl-tRNA synthetase TERM 664 601375 - 601357 - G 79 -7.6 -4.3078 | AATCACATCAATAAA TTTAAGAT CAA ATCTTAAA TCCGGCTTATCAGAG TERM 665 601719 - 601691 - G 76 -9.6 -2.64616 | opp_overlap 601686 601683, overlap 601694 601695 CCCTGATGCACACGA GAAGGCACGAGA TAATC TCTTGCGCCTTC GGGAGTAGCTTTGGT TERM 666 602653 - 602672 + G 78 -4.4 -5.40072 | gap 1, opp_overlap 602653 602654 TTTAAAGTTGATGAA GC-TGAAAA TTT TTTTCAAGC TTTTTTTCAAGGAGA Cj0641 602326 - 603186 + | putative inorganic polyphosphate/ATP-NAD kinase TERM 667 604137 - 604119 - g 80 -6.1 -4.96028 | overlap 604131 TTTGAAAAAAAAGAA CTTGAAA AAAAA TTTCAAG AATTAAAACAAAAAT TERM 668 604145 - 604131 - g 80 -2.2 -5.81032 | overlap 604119 GAACTTGAAAAAAAA TTTCAA GAA TTAAAA CAAAAATTAGAAGAA TERM 669 604289 - 604277 - g 72 -4.9 -4.87803 | opp_overlap 604277 GACGCTTAAAGAAAA TGAAA AAA TTTCA ATTTTAGGCAAAGAT recN 603186 - 604709 + | putative DNA repair protein cbrR 604815 - 606059 + | two-component response regulator Cj0644 606050 - 606865 + | putative TatD-related deoxyribonuclease protein TERM 670 607852 - 607842 - gf 72 -2.6 -5.36314 | TAAAATAGCAAAAAA TTAT AAT ATAA GTGTTGATGAAATTC Cj0645 606865 - 607983 + | putative secreted transglycosylase Cj0646 607943 - 608770 + | putative lipoprotein TERM 671 609242 - 609228 - g 81 -2.8 -5.67063 | TTTAGTAGAAAAAAA TCATCT AGA AGAAGA ATGGAATAAGCTTTG Cj0647 608776 - 609264 + | putative HAD-superfamily hydrolase Cj0648 609255 - 609770 + | hypothetical protein Cj0649 609752 - 610213 + | putative OstA family protein Cj0650 610210 - 610806 + | GTPase EngB Cj0651 610803 - 611297 + | putative integral membrane protein TERM 672 612665 - 612679 + G 70 -4.2 -5.00884 | overlap 612666 AATCGCAAAAAGTGG AGAGGT TAT ACCTCA TTTTTTAAAAAGCAT TERM 673 612666 - 612678 + G 72 -7.7 -3.60048 | overlap 612665 ATCGCAAAAAGTGGA GAGGT TAT ACCTC ATTTTTTAAAAAGCA pbpC 611298 - 613103 + | penicillin-binding protein TERM 674 613122 - 613137 + T 74 -4.8 -5.055 | opp_overlap 613118 613122 TTAGTTGTAAATTGA GTTTTT CAAA AAAAAC TTTTTTAGCAATTGG TERM 675 613194 - 613162 - T 72 -8 -3.34488 | opp_overlap 613163, overlap 613161 AATTGGTTTAAAAAT CTTGTATTAAAC AAATTATAA GTTTAATACAAG GAAAATTTATCTATG Cj0653c 615014 - 613224 - | putative aminopeptidase TERM 676 613877 - 613856 - G 73 -5.9 -4.58644 | AATCAATAAGTAAAA GCCCATCTT TTTT AAGATAAGC AAAACTCTCTTTTGT TERM 677 615666 - 615648 - R 74 -4.7 -5.00196 | opp_overlap 615645 615648 CTGCAAAGAATAAAA CAATTAA AATTA TTAATTG TTGTTTCTCTCTTTT TERM 678 616048 - 616032 - R 72 -8 -3.4033 | opp_overlap 616031 AAACCACATATAAGA GGAGCA ATGAA TGCTCC AATGTTAATTCCTAT TERM 679 616518 - 616555 + r 74 -8.9 -2.97995 | opp_overlap 616512 616518 616528 616530, overlap 616513 616520 616538 ATAATTAAATTACAA TATTTTTAAATATTTTT TTAT AATAATATTTAAAAATA TAATATTTTAATATT TERM 680 616555 - 616518 - R 79 -8.9 -3.65638 | opp_overlap 616518 616513 616520 616538, overlap 616512 616528 616530 ATAATTAAATTACAA TATTTTTAAATATTTTT TTAT AATAATATTTAAAAATA TAATATTTTAATATT Cj0659c 617120 - 616572 - | putative periplasmic protein Cj0660c 618219 - 617113 - | putative transmembrane protein TERM 681 617843 - 617855 + g 72 -2.7 -5.47399 | overlap 617852 TCCATATTACCTGGA TTGAA ATT TTCGA TTTTTTTAAGATTGA era 619081 - 618206 - | GTP-binding protein Era TERM 682 618769 - 618790 + g 71 -5.9 -4.50976 | GTACTTGTGGGTTTA GACTAAGAA AATT TTCATAGTC TTTTGTACTATCAAA TERM 683 618963 - 618974 + g 85 -7.2 -4.99043 | ATGGCTTTGATTTTA CGCC TTGT GGCG TTTTGTTTGTGAGAA hslU 620397 - 619078 - | ATP-dependent protease ATP-binding subunit hslV 620936 - 620394 - | ATP-dependent protease peptidase subunit rplI 621379 - 620936 - | 50S ribosomal protein L9 argG 622612 - 621392 - | argininosuccinate synthase TERM 684 622722 - 622744 + H 77 -2 -5.86061 | opp_overlap 622727, overlap 622723 AAAGCAAAGGCGTAA GCAAATTTTG TTC CAAAAATTGA TTTTTTTTGCTAAAA Cj0667 622768 - 623013 + | putative S4 domain protein TERM 685 623131 - 623113 - g 100 -11.8 -4.62069 | opp_overlap 623111 623116 TGGCTAGCGGAAAAA CAAGCTTG GTG CAAGCTTG GGTTAAATTTCTTGG Cj0668 623010 - 623417 + | putative ATP/GTP-binding protein Cj0669 623410 - 624138 + | ABC-transporter ATP-binding protein rpoN 624138 - 625388 + | RNA polymerase factor sigma-54 TERM 686 626355 - 626377 + G 72 -8.4 -3.30124 | AGGTGTATTTGATTT CTTGCGTCCA AAC TGGGGGCAAG TTGTAAAAAATGGCA dcuB 625552 - 626976 + | anaerobic C4-dicarboxylate transporter TERM 687 627006 - 626981 - f 73 -9.1 -2.77895 | opp_overlap 626982, overlap 626980 GTTATCTTTAACAAT TTTTAGCAGGA TTTT TCCTGCTAAAT TCTTCATTTGTCTTT TERM 688 626982 - 627005 + F 100 -12.6 -3.95911 | opp_overlap 626981 626980 TTATCTTTAACAATT TTTAGCAGGA TTTT TCCTGCTAAA TTCTTCATTTGTCTT Cj0672 627118 - 627306 + | putative periplasmic protein TERM 689 627811 - 627826 + F 83 -9 -3.95456 | TTTATGAAGATTTTA CGCGTA TTAT TACGCG TTTGATGTTGCCTTT kdpB 629020 - 631065 + | potassium-transporting ATPase subunit B TERM 690 632289 - 632279 - g 70 -5.4 -4.56187 | TATAAGGAAAAACAA GCTA AAC TAGC ACTTGAAAATTTCTT TERM 691 633301 - 633289 - g 72 -2.7 -5.38054 | TCCTATAAATAAAAA CAATA TTT TATCG AAACCTTTGTTGTTT kdpD 631667 - 633487 + | truncated KdpD protein uvrB 635562 - 633589 - | excinuclease ABC subunit B TERM 692 633658 - 633668 + g 74 -5.4 -4.91657 | CTCAAGTGCTTTAGC TGCT TCA AGCA TTTGTTTTCTTAATT Cj0681 635716 - 635946 + | hypothetical protein Cj0682 635936 - 636178 + | hypothetical protein Cj0683 636175 - 636612 + | putative periplasmic protein TERM 693 636856 - 636870 + G 81 -7.2 -4.57275 | TTTATTATTATGCTT CAAAAC TTG GTTTTG TTTTGGGTTTTTTTG TERM 694 638220 - 638166 - g 70 -4.4 -4.94487 | TTAGAAAATAGAAAA GATCTTTACCCCCCATTTAAACGCCT TTT AAGAGTTCTTATAGAAGATAAAGATC AAAAAAGTGCACAAA priA 636594 - 638447 + | primosome assembly protein PriA cipA 639892 - 638540 - | Invasion protein CipA ispG 639998 - 641071 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 695 641106 - 641074 - T 100 -8.5 -5.093 | opp_overlap 641082, overlap 641075 641082 TGTAAAAGAATAAAA GCCTAAAAGCAAGGT TAA ACCTTGCTTTTTAGA ATGGCCATATCGCTT TERM 696 641105 - 641075 - T 93 -12 -3.63953 | opp_overlap 641082, overlap 641074 641082 GTAAAAGAATAAAAG CCTAAAAGCAAGGT TAA ACCTTGCTTTTTAG AATGGCCATATCGCT TERM 697 641082 - 641098 + T 100 -10.9 -4.62069 | opp_overlap 641075 641074 641082 AATAAAAGCCTAAAA GCAAGGT TAA ACCTTGC TTTTTAGAATGGCCA TERM 698 641098 - 641082 - T 93 -10.9 -4.30559 | opp_overlap 641082, overlap 641075 641074 AATAAAAGCCTAAAA GCAAGGT TAA ACCTTGC TTTTTAGAATGGCCA flgH 641800 - 641102 - | flagellar basal body L-ring protein TERM 699 642892 - 642904 + G 74 -6.3 -4.44277 | ATTTTCTTTATGGGG CTTGA AGA TCAAG TTTTAGCTTTTGCTG TERM 700 643271 - 643255 - g 95 -10.9 -3.87641 | opp_overlap 643252 643251 643250, overlap 643268 643269 AATATTTGTTACAAA GCAGTTC AAA GAACTGC TAATGCTTTAGCAAT pta 641890 - 643395 + | putative phosphate acetyltransferase ackA 643409 - 644599 + | acetate kinase TERM 701 644634 - 644610 - T 81 -7.4 -4.71482 | opp_overlap 644610 644628 ATTAAATTTTAAAAA CTATATAAAT CTTTC ATTTATATAG TTTTTAGCAAAGTTA TERM 702 644610 - 644634 + T 81 -7.4 -4.58283 | opp_overlap 644610, overlap 644628 ATTAAATTTTAAAAA CTATATAAAT CTTTC ATTTATATAG TTTTTAGCAAAGTTA Cj0690c 648379 - 644627 - | putative restriction/modification enzyme TERM 703 646038 - 646059 + g 78 -6.7 -4.66537 | gap 1 TCTTTTTTCTTGCTA GCGATTA-AG CTT CTATAATCGC TTTTATATTGCGGAA Cj0691 648529 - 649020 + | hypothetical protein Cj0692c 649946 - 649008 - | hypothetical protein TERM 704 649597 - 649618 + g 89 -3.1 -6.17669 | opp_overlap 649602, overlap 649602 TTTGCTTTTTTTCTG CTAAATAAA AAAT TTTTTTTAG TTTTTTTATTTTCTT TERM 705 649672 - 649683 + g 70 -4.4 -4.86902 | GAAAAAATTTTTTTA GCAA GAGA TTGC TTTTCTTCTAATTTA mraW 650884 - 649946 - | S-adenosyl-methyltransferase MraW Cj0694 651043 - 652533 + | putative periplasmic protein TERM 706 653884 - 653862 - g 72 -6.4 -4.323 | TTTAAAGAGCCAAAA GAAAAAAAAC CTA GTGTTTTTTC AAATATCTGGCATAA ftsA 652530 - 653918 + | cell division protein FtsA ftsZ 653934 - 655046 + | cell division protein FtsZ TERM 707 655061 - 655082 + F 90 -7.4 -5.04325 | opp_overlap 655061 AAATTGATTTTTAAA GCAAGATT GAGTCA AATCTTGC TTTTTATAGTTTAAA TERM 708 655082 - 655061 - f 70 -7.4 -3.58536 | opp_overlap 655061 AAATTGATTTTTAAA GCAAGATT GAGTCA AATCTTGC TTTTTATAGTTTAAA flgG2 655202 - 656014 + | flagellar basal-body rod protein TERM 709 656054 - 656044 - g 70 -4 -4.88129 | opp_overlap 656044 AAAAAGGATTAAAAA TGAT GAG ATCA CTTCATACTGCTGCT flgG 656043 - 656834 + | flagellar basal body rod protein FlgG TERM 710 656870 - 656896 + T 100 -12.5 -5.00884 | TTTAATTCTTTTTTG TTTAATGGCGT GTTAA ACGCCATTAAA TTTTTTAGCAAGAGT glnA 658331 - 656901 - | glutamine synthetase Cj0700 658534 - 659229 + | hypothetical protein TERM 711 660389 - 660369 - g 72 -4.1 -5.08169 | overlap 660370 660386 ATAGAGTTTAAAAAA CTTATTGCT AAA AACAATAAA GAATTTAGCGAAATT TERM 712 660405 - 660390 - g 71 -4.8 -4.76802 | overlap 660386 GCTAAAAACAATAAA GAATTT AGCG AAATTC ATAGCGGTAATGAAC Cj0701 659226 - 660479 + | putative protease purE 660480 - 660974 + | phosphoribosylaminoimidazole carboxylase catalytic subunit Cj0703 660984 - 661520 + | hypothetical protein glyQ 661532 - 662395 + | glycyl-tRNA synthetase subunit alpha TERM 713 662715 - 662737 + G 75 -7.2 -4.1196 | opp_overlap 662715, overlap 662719 662736 ACTTATTTTACGGAA GAAATTTTAG GTT TTAAAATTTC TTTTAAAGATAAATT TERM 714 662832 - 662813 - g 80 -2.2 -5.75342 | CTGGGTGAAAAAAAA GTTAAATT TGCA AATTTTAC GTGTAAGTGATTGTG Cj0705 662382 - 663107 + | conserved hypothetical protein Cj0705 Cj0706 663117 - 663833 + | conserved hypothetical protein Cj0706 TERM 715 663859 - 663883 + G 72 -5 -4.71463 | TTATTTTTTAACTTG GACGGCAT TTTTATTTT GTGCCGTC TTTATTCTTTTACTT TERM 716 664271 - 664282 + G 83 -3 -5.69976 | GATAAGTCTTATCAT TCTT ATCA AAGA TTTTCTTTTTTTTAT TERM 717 664288 - 664304 + G 86 -5.3 -5.64304 | TTATCAAAGATTTTC TTTTTTT TAT AAAAAAA TTTTTTCTTATATTG kdtA 663830 - 664987 + | 3-deoxy-D-manno-octulosonic-acid transferase TERM 718 665155 - 665135 - g 72 -4.8 -4.89729 | GATAAAAGCTAAAAA TCCTCAAA TTATT TTTGAAGA TGATAAGATTATTGC Cj0708 664968 - 665720 + | putative ribosomal pseudouridine synthase TERM 719 665903 - 665890 - g 74 -3.1 -5.49809 | overlap 665880 GAAACCTTAAAAAAA GCTCT TTTA AAAGC AGATGTTCACCATAA ffh 665788 - 667125 + | signal recognition particle protein TERM 720 667127 - 667166 + F 100 -8.3 -5.18355 | opp_overlap 667127 667162 GAAGACAGTTTTAAA TTTTATTTATAAATACT TTTTAT AGTATCTATAAATAAAA TTTTTAATTTTTAAG TERM 721 667166 - 667127 - f 87 -10.5 -3.60948 | opp_overlap 667127, overlap 667162 GAAGACAGTTTTAAA TTTTATTTATAAATACT TTTTAT AGTATCTATAAATAAAA TTTTTAATTTTTAAG rpsP 667190 - 667417 + | 30S ribosomal protein S16 Cj0711 667420 - 667662 + | hypothetical protein rimM 667655 - 668194 + | putative 16S rRNA processing protein TERM 722 668858 - 668846 - g 70 -6.3 -4.07568 | TGGCGTCTTGCAAAA CGAAA TTT TTTCG TCCAGATTTATTTTT trmD 668191 - 668895 + | tRNA (guanine-N(1)-)-methyltransferase rplS 668906 - 669262 + | 50S ribosomal protein L19 TERM 723 669260 - 669272 + F 70 -3.5 -5.20333 | opp_overlap 669260 669264, overlap 669254 AAAGAGCTTAAAAAA TAATT TAT AATTA TTTTTATTATAAGTC TERM 724 669272 - 669260 - f 70 -3.5 -5.10077 | opp_overlap 669260 669254, overlap 669264 AAAGAGCTTAAAAAA TAATT TAT AATTA TTTTTATTATAAGTC Cj0715 669395 - 669808 + | transthyretin-like periplasmic protein TERM 725 670882 - 670868 - g 72 -8.6 -2.96984 | TAAATTTAGTATATA GCATAG ATC CTATGC ATGGAAATACGGTAA Cj0716 669832 - 671172 + | putative phospho-2-dehydro-3-deoxyheptonate aldolase TERM 726 671317 - 671307 - g 78 -4 -5.45802 | overlap 671301 TGGTTAAAACAAAAA TCTT TTG AAGA ACTTATCAATACTGC Cj0717 671169 - 671498 + | putative ArsC family protein TERM 727 671499 - 671520 + F 100 -7.4 -5.5604 | opp_overlap 671501 671503 GAGAAAATGTTATGA TAGAGTGT TTGATT ACACTCTA TTTTTTATTAATTGA TERM 728 671690 - 671704 + F 70 -8.6 -2.5805 | overlap 671689 CGCTTTGTAGTTCTT CTGCAA CCC TTGCAG CTTGTGGGCGATAAT TERM 729 675136 - 675124 - g 70 -6.3 -4.04608 | overlap 675122 AAGAAATAGAAAACA TCATC AAA GATGA AAATTTAAAAAATAA TERM 730 675280 - 675270 - g 88 -4 -5.68039 | AAAGCTATAAAAAAA TTTG GAG CAAA AAAAGATTTTAAAAA dnaE 671946 - 675548 + | DNA polymerase III subunit alpha TERM 731 675543 - 675569 + T 73 -6 -4.66609 | opp_overlap 675542 675543, overlap 675544 675558 ATTTCTAATAAATAT GCTTAAGTAAGA TTG TTTTACTTAAGA TTTTTAAATAAAATG TERM 732 675544 - 675568 + T 80 -9.5 -3.39483 | opp_overlap 675542 675543, overlap 675543 675558 TTTCTAATAAATATG CTTAAGTAAGA TTG TTTTACTTAAG ATTTTTAAATAAAAT Cj0719c 676192 - 675560 - | conserved hypothetical protein Cj0719c TERM 733 676200 - 676229 + r 86 -10.9 -3.44319 | opp_overlap 676205, overlap 676205 AAAGTCATTTTGATA AAAAATAAGCCCT ATTT AGGGCTTATTTTA TTGTAATAAATTAGC TERM 734 676205 - 676224 + r 100 -10.8 -4.81212 | opp_overlap 676205, overlap 676200 CATTTTGATAAAAAA TAAGCCCT ATTT AGGGCTTA TTTTATTGTAATAAA TERM 735 676224 - 676205 - R 100 -10.8 -5.252 | opp_overlap 676205 676200 CATTTTGATAAAAAA TAAGCCCT ATTT AGGGCTTA TTTTATTGTAATAAA flaC 676976 - 676227 - | flagellin Cj0721c 677485 - 677015 - | putative integral membrane protein. Functional classification-Membranes, lipoproteins and porins TERM 736 677069 - 677056 - G 83 -2.4 -5.90231 | AGAAATATAAAAAAA CTTG CATTAT CAAG ATGATTTTAATCACC TERM 737 677421 - 677407 - G 95 -7.2 -5.86061 | opp_overlap 677406 677407 TTTGAGGAAAAAAAA TTGTTG GTG CAACAA CTATTCCTAGTATGA Cj0722c 678313 - 677498 - | putative DNA methylase TERM 738 677913 - 677925 + g 76 -6.3 -4.57341 | GCTTTGGGATTGATA TCACA GGC TGTGA TTTTTAACCCAAGTT Cj0723c 679497 - 678310 - | putative integral membrane zinc-metalloprotease TERM 739 679065 - 679053 - G 70 -6.3 -4.18351 | AAAGCAAAGTATAAA GGATT AAA AATCC AAATATTAAAGTTAA Cj0724 679624 - 679809 + | hypothetical protein mogA 680348 - 679806 - | molybdenum cofactor biosynthesis protein TERM 740 680088 - 680076 - G 74 -9.1 -2.80113 | opp_overlap 680075 680074 CATCATTTTATCACA CACGG CTT CCGTG GCTTCTGGGGTTACA TERM 741 680221 - 680235 + g 72 -2.9 -5.4251 | overlap 680217 GGGATTAATTCTTTA TGATA AATAA TATCA TTTTTTATATATGAA corA 681352 - 680369 - | magnesium and cobalt transport protein TERM 742 681003 - 681023 + g 73 -5.6 -4.59773 | GTGCTAAATTCGTTA TATCTTAT AGTAA ATAAGATA TTTTTAGCGGTAGCA Cj0727 681469 - 682515 + | putative periplasmic solute-binding protein TERM 743 682645 - 682659 + G 72 -2.8 -5.43866 | opp_overlap 682640 TACAGTAAAACCTCC TAAGGA TGC TCCTGA TTTTTTTAAAACTTA TERM 744 683812 - 683832 + G 72 -4.1 -5.02074 | opp_overlap 683814, overlap 683814 TGATGATAATGAATT TATTTTACT TGA AGTAAAAGA TTTTTTAAAGAGTAA Cj0728 682526 - 683851 + | putative periplasmic protein TERM 745 684014 - 684028 + G 75 -7.1 -4.1899 | opp_overlap 684014 ACGAGTGCTTATTAA CAGGC GTAAA GCCTG TTTTAAGTGGGATAA Cj0729 683848 - 684657 + | putative type I phosphodiesterase/nucleotide pyrophosphatase Cj0730 684654 - 685493 + | putative ABC transport system permease Cj0731 685494 - 686273 + | putative ABC transport system permease TERM 746 686395 - 686407 + G 72 -7.7 -3.6878 | TAGGCCCAAGTGGCT GTGGA AAA TCCAC TCTTTTAAGGTGTAT Cj0732 686277 - 687266 + | ABC transport system ATP-binding protein TERM 747 687397 - 687378 - g 75 -4.4 -5.30686 | overlap 687380 AATATTTAGAAAAAA TCGTTTTT TATC AAAAACAA TATCAAGAAAAAAAG TERM 748 687577 - 687592 + G 88 -7.6 -4.8622 | opp_overlap 687576 687577 AAGGTGTATTATAAT TTCAGC TACG GCTGAA TTTTTAGTTAGAAAA Cj0733 687263 - 687901 + | putative HAD-superfamily hydrolase TERM 749 687906 - 687927 + T 91 -11.7 -3.57161 | opp_overlap 687906 687909, overlap 687909 TAACTTTTTAAGCTA TAAGCGTGA AAAT TCACGCTTA TTCTAATTCATATTT TERM 750 687927 - 687906 - T 87 -11.7 -2.53213 | opp_overlap 687906 687909, overlap 687909 TAACTTTTTAAGCTA TAAGCGTGA AAAT TCACGCTTA TTCTAATTCATATTT TERM 751 687909 - 687924 + T 83 -9 -3.90241 | opp_overlap 687906 687909, overlap 687906 CTTTTTAAGCTATAA GCGTGA AAAT TCACGC TTATTCTAATTCATA TERM 752 687924 - 687909 - T 77 -9 -3.41878 | opp_overlap 687909 687906, overlap 687906 CTTTTTAAGCTATAA GCGTGA AAAT TCACGC TTATTCTAATTCATA hisJ 688680 - 687925 - | histidine-binding protein precursor TERM 753 688923 - 688901 - H 77 -5.8 -4.77986 | TTAAATATTGAAAAA TAAAATATCA AAT TAATATTTTA TAATCAACTCAGGAC Cj0735 689007 - 689726 + | putative periplasmic protein TERM 754 690136 - 690122 - gf 70 -7.2 -3.62597 | TTTACGGTGGAAGAA CATTAC AGG GTAATG CAGAGAAAAATTCTA Cj0736 689656 - 691584 + | hypothetical protein Cj0737 691596 - 692672 + | putative haemagglutination activity domain containing protein Cj0738 692726 - 692890 + | hypothetical protein Cj0739 692878 - 693051 + | hypothetical protein Cj0740 693048 - 693212 + | hypothetical protein Cj0741 693191 - 694117 + | hypothetical protein TERM 755 694329 - 694303 - f 79 -5.9 -5.04082 | opp_overlap 694310, overlap 694306 TAAATAATAATAAAA TAAGAGAGCTT ATAGA AAGCTCTCCTG AAGCAAATGAACCAC TERM 756 694326 - 694306 - f 95 -9.8 -4.55653 | opp_overlap 694310, overlap 694303 ATAATAATAAAATAA GAGAGCTT ATAGA AAGCTCTC CTGAAGCAAATGAAC TERM 757 694404 - 694384 - f 71 -2.5 -5.59502 | TAAAAAATCAAAAAA GCCCTGTAA ATT TCAAAGAGC AAAATACTACAAATA TERM 758 695559 - 695569 + F 74 -6.8 -4.21908 | opp_overlap 695558 TTATCAAAAAGTTAT CAGC GAT GCTG TTTTAGATAGTAGTG TERM 759 696378 - 696356 - f 72 -4.3 -4.99435 | opp_overlap 696356 TCTAATAATTAAAAA GATTAAAAA CTTTT CTTTTAATC TTTCATAACTTTTTC TERM 760 696406 - 696387 - f 72 -8 -3.31322 | TTTAATCTTTCATAA CTTTTTCT TTGA AGAAAAAG ATTAAACTATCTATA TERM 761 696443 - 696406 - f 72 -4.3 -5.06414 | opp_overlap 696413 TTCTTTGAAGAAAAA GATTAAACTATCTATAA TTTT TTATGGAGAGTTTGATC CTGGCTCAGAGTGAA TERM 762 697905 - 697922 + F 74 -9.1 -3.07291 | opp_overlap 697905 GTCGTAACAAGGTAA CCGTAGG AGAA CCTGCGG TTGGATCACCTCCTT TERM 763 698391 - 698413 + F 86 -7.8 -4.56187 | overlap 698393 TTAATATATATACTT CCTTTAGGTT TTA AACCTAAATG TTCTTTTTAATTATC TERM 764 698393 - 698411 + F 83 -9 -3.86437 | overlap 698391 AATATATATACTTCC TTTAGGTT TTA AACCTAAA TGTTCTTTTTAATTA TERM 765 699011 - 698994 - f 91 -11.3 -3.66803 | opp_overlap 698993 698992, overlap 698987 GCGCAAGAGGGCAAA CCCAGTG CTTG CACTGGG GGTTGTAGGACTGCA TERM 766 701660 - 701670 + F 70 -5.4 -4.57341 | AATAAAGCATCACTT CCTT GTT AAGG TTTTTAAGAAGACTT Cj0747 702810 - 702917 + | hypothetical protein TERM 767 702940 - 702920 - f 90 -8.3 -4.67982 | opp_overlap 702919 TTTTATTCAATAAAA CTCTCACTT CTT AAGTGGGAG ATGAATTGCTTACAG Cj0748 703027 - 703119 + | hypothetical protein TERM 768 704457 - 704467 + T 77 -5.4 -4.96848 | opp_overlap 704455 TTAGCTTAATTTATA TACC AAT GGTA TTTTTATATGAAAAG tonB3 705125 - 704442 - | TonB transport protein TERM 769 704474 - 704492 + g 71 -7.6 -3.38191 | overlap 704485 CCAATGGTATTTTTA TATGAAAA GTT TTTTCATA TTGTGGAAATTTTTT TERM 770 705045 - 705031 - G 79 -5.8 -5.03314 | TGTATGTGTAAAAAA TCTTTA GAA TAAAGA AAAACAAAAAATAAA TERM 771 707274 - 707260 - g 72 -5 -4.77165 | overlap 707264 GCTTCTATAATAAAA TTACCC CTT GGATAA AAGGCGAGTGGCAAA cfrA 705450 - 707540 + | ferric enterobactin uptake receptor TERM 772 707556 - 707582 + F 100 -6.7 -5.83211 | gap 1, opp_overlap 707556 GCTTTGATAGAAGAA CCAAAG-AGCTT TCAA AGGCTTCTTTGG TTTTTTATTTTAATA TERM 773 707735 - 707715 - f 74 -5.5 -4.81082 | overlap 707716 AAGTAACTAATAAAA CTTTAGTCA TAT TGACTAAAT AAAATTAAGTATATT TERM 774 707734 - 707716 - f 77 -9 -3.47023 | overlap 707715 AGTAACTAATAAAAC TTTAGTCA TAT TGACTAAA TAAAATTAAGTATAT TERM 775 708411 - 708451 + G 100 -16.5 -3.24017 | opp_overlap 708411 708434, overlap 708406 708423 708433 GAAGCAATGAAGAAA GAGCTTATCAAATTTATCA AAA TGATGAATTTGTTAAGCTC TTAGATTGTCAAATT TERM 776 708451 - 708411 - g 100 -14.3 -4.36343 | opp_overlap 708411 708406 708423 708433, overlap 708434 GAAGCAATGAAGAAA GAGCTTATCAAATTTATCA AAA TGATGAATTTGTTAAGCTC TTAGATTGTCAAATT hrcA 707840 - 708634 + | heat-inducible transcription repressor grpE 708631 - 709161 + | heat shock protein GrpE TERM 777 709461 - 709420 - g 71 -7.6 -3.43151 | overlap 709432 TTAATGATCAATGAA GATGCGGCTAAAGAAG-CTA AAAA TAGACTTCCTTA-CCACATC ACCGAAAGAAATGGT TERM 778 709545 - 709523 - g 72 -6.4 -4.32579 | ACACCCCACAAGAAA TTTCAGCAAA AGT TTTGATGAAA TTAAAAGAAGATGCA TERM 779 711036 - 711022 - g 85 -2.8 -5.98675 | overlap 711025 711027 GATAAAAAGAAAAAA GATGAC GAT GTAATC GACGCTGAAGTTGAG dnaK 709183 - 711054 + | molecular chaperone DnaK TERM 780 711067 - 711095 + F 100 -11.9 -5.15117 | opp_overlap 711055 711074, overlap 711069 TAATCTTAAAATCTC TATTCAAGCCTTT TTA AAAGGCTTGAAAA TTTTTTAAAATTTTA TERM 781 711069 - 711093 + F 100 -14.5 -2.78839 | opp_overlap 711055 711074, overlap 711067 ATCTTAAAATCTCTA TTCAAGCCTTT TTA AAAGGCTTGAA AATTTTTTAAAATTT TERM 782 711088 - 711074 - f 71 -8.6 -3.07575 | opp_overlap 711069 711067, overlap 711055 AAAATCTCTATTCAA GCCTTT TTA AAAGGC TTGAAAATTTTTTAA TERM 783 711293 - 711258 - f 82 -6.6 -4.96523 | gap 1, opp_overlap 711263 711267, overlap 711263 711267 AAATTAACAATAAAA TAAAATTA-ATCTAAAA ACT TTTTAGATATAATCTTA ATAAACATAAAAGGA TERM 784 711288 - 711263 - f 78 -4.3 -5.33124 | gap 1, opp_overlap 711263 711267, overlap 711258 711267 AACAATAAAATAAAA TTA-ATCTAAAA ACT TTTTAGATATAA TCTTAATAAACATAA TERM 785 711283 - 711267 - f 71 -6.7 -3.94607 | opp_overlap 711267 711263, overlap 711263 711258 ATAAAATAAAATTAA TCTAAAA ACT TTTTAGA TATAATCTTAATAAA Cj0760 711314 - 712336 + | hypothetical protein Cj0761 712406 - 712747 + | hypothetical protein TERM 786 712768 - 712806 + T 74 -5.6 -4.75404 | gap 1, opp_overlap 712774 712777, overlap 712767 712770 712774 TAAGGTTTTAATTTG C-CTAAATAATTCTAGG CTTTAA CCTAGAATTATTTATAG TTTTTAATGAAATTT TERM 787 712770 - 712803 + T 100 -12.8 -3.28472 | opp_overlap 712774 712777, overlap 712767 712768 712774 AGGTTTTAATTTGCC TAAATAATTCTAGG CTTTAA CCTAGAATTATTTA TAGTTTTTAATGAAA TERM 788 712799 - 712774 - T 84 -9.9 -3.55622 | opp_overlap 712767 712774 712770 712768, overlap 712777 TTTAATTTGCCTAAA TAATTCTAGGC TTTA ACCTAGAATTA TTTATAGTTTTTAAT TERM 789 712774 - 712799 + T 86 -9.2 -4.27774 | opp_overlap 712774 712777, overlap 712767 712770 712768 TTTAATTTGCCTAAA TAATTCTAGG CTTTAA CCTAGAATTA TTTATAGTTTTTAAT TERM 790 712796 - 712777 - T 74 -7.2 -3.91488 | opp_overlap 712767 712774 712770 712768, overlap 712774 AATTTGCCTAAATAA TTCTAGGC TTTA ACCTAGAA TTATTTATAGTTTTT aspB 713966 - 712797 - | aspartate aminotransferase TERM 791 712958 - 712972 + g 76 -2.9 -5.51046 | TTTGACAAAATTTCA TAGAA TCTTT TTCTA TTTTTTGTATATTTA TERM 792 713248 - 713236 - G 70 -5.5 -4.26188 | overlap 713237 GCCATATAGCCAAAA CGCCA TCC TGGCA TAGCTCCACATTTGC TERM 793 713485 - 713495 + g 83 -3.2 -5.71638 | AAAACTTTGGTTTTA GCTG TGA TAGC TTTTTTTAATTGTTC cysE 714776 - 714138 - | serine acetyltransferase speA 716612 - 714777 - | arginine decarboxylase TERM 794 715082 - 715094 + g 72 -4.9 -4.89852 | CAAGAAAAAACCCTA GAAAA TAA TTTTC TTTTTCTACATCTAC hisS 717835 - 716609 - | histidyl-tRNA synthetase TERM 795 717184 - 717214 + g 71 -7.7 -3.38378 | overlap 717183 TATTGATCAAAAGCG GAGCATTTTCAAG CAAAT TTTGACAATGCTC ATTTTTACAATCTAA tdk 718410 - 717832 - | thymidylate kinase TERM 796 717900 - 717911 + g 83 -3 -5.79595 | opp_overlap 717900, overlap 717908 CGTCAAGTGTTAAAA TTTC TACA GAAA TTTTTTCTTTTAAAA coaD 718877 - 718401 - | phosphopantetheine adenylyltransferase Cj0768c 719480 - 718917 - | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase flgA 720139 - 719477 - | flagellar basal body P-ring biosynthesis protein FlgA TERM 797 720211 - 720199 - R 77 -7.7 -4.21989 | opp_overlap 720199 TATAAGTTTAACAAA GCCTT TAG AAGGC TTTGTATAGAGTTAA TERM 798 720199 - 720211 + r 75 -7.7 -4.06491 | opp_overlap 720199 TATAAGTTTAACAAA GCCTT TAG AAGGC TTTGTATAGAGTTAA Cj0770c 720999 - 720223 - | putative NLPA family lipoprotein Cj0771c 721779 - 721009 - | putative NLPA family lipoprotein TERM 799 721823 - 721807 - R 100 -8 -5.4833 | GTACTTAAGAAAAAA GTCCCT AGGTA AGGGAC AAAATTAAAAAGCAG Cj0772c 722601 - 721828 - | putative NLPA family lipoprotein TERM 800 722773 - 722793 + r 86 -6.9 -5.03747 | opp_overlap 722776, overlap 722776 CTTATATTTATCTTA AAAGGAGAT ATA ATCTCCTTA TTTTTTGAAACCTTT TERM 801 722790 - 722776 - R 83 -8.6 -4.15006 | opp_overlap 722776 722773 ATATTTATCTTAAAA GGAGAT ATA ATCTCC TTATTTTTTGAAACC TERM 802 722776 - 722790 + r 90 -8.6 -4.61482 | opp_overlap 722776, overlap 722773 ATATTTATCTTAAAA GGAGAT ATA ATCTCC TTATTTTTTGAAACC Cj0773c 723702 - 722791 - | putative binding-protein dependent transport system permease protein Cj0774c 724709 - 723699 - | ABC transport system ATP-binding protein valS 727326 - 724714 - | valyl-tRNA synthetase TERM 803 724750 - 724760 + g 70 -4 -4.89729 | TTCAACTGATATTTT TTCA AGT TGAA TTTTTAAATTTTCTA TERM 804 724848 - 724876 + g 100 -9.1 -5.79588 | opp_overlap 724851 TTGAAAGCATGGAGT TAAGCTTGAAA CTTTCTT TTTCAAGCTTA TTTTTTTGATTTTCA TERM 805 724968 - 724980 + g 72 -4.1 -5.10461 | CGCTAACATCACATA TTGCC TTT GGTAA TTTTTCTTCACTAAA TERM 806 725003 - 725021 + g 100 -13.2 -3.42574 | opp_overlap 724997 TCACTAAATTCTATT TGCTCGCA CTT TGCGAGCA TTATGATAAAATTCA Cj0776c 728371 - 727349 - | putative periplasmic protein TERM 807 728319 - 728295 - G 74 -7.3 -3.98606 | opp_overlap 728300, overlap 728293 728301 GAATATTCAAAAAGA TAATAATAGGT TCC ACCTAATATTA CAATAACAGCAATTA TERM 808 728313 - 728301 - G 70 -6.3 -4.14576 | opp_overlap 728300, overlap 728295 728293 TCAAAAAGATAATAA TAGGT TCC ACCTA ATATTACAATAACAG TERM 809 730197 - 730211 + G 75 -4.4 -5.22039 | AAATTATAGCGATAT TTATAA GTA TTATAA TTTTTTAACTTTAGG Cj0777 728500 - 730530 + | putative ATP-dependent DNA helicase TERM 810 730829 - 730810 - g 71 -2.2 -5.40474 | opp_overlap 730816 ATTTTGCTAAAAAAA TTCCAA GTTTAAGT TTGGAA AATTTAAGCGTTTTA TERM 811 731045 - 731035 - g 72 -2.6 -5.36364 | GTAAAAATATAAAAA TTTA TGC TAAA AATTCCAAAGCTGCT peb2 730569 - 731306 + | major antigenic peptide PEB2 tpx 731405 - 731932 + | thiol peroxidase TERM 812 731939 - 731961 + F 100 -7.8 -5.10968 | opp_overlap 731943 TGCCATTAATTTTGA TTAAGCCC ATTCTTA GGGCTTAA TTTTTATATCTTCAT TERM 813 733166 - 733188 + G 72 -7.8 -3.69069 | overlap 733172 GTAATCACTTTAGAT GATGAAGAGG CTA CTTCTTTATC TTATCTTGGCGTTAA napA 732179 - 734953 + | nitrate reductase napG 734971 - 735711 + | quinol dehydrogenase periplasmic component napH 735708 - 736490 + | quinol dehydrogenase membrane component napB 736487 - 737011 + | periplasmic nitrate reductase small subunit (cytochrome C-type protein) TERM 814 737018 - 737028 + G 78 -4 -5.48213 | opp_overlap 737018 GTAAAGTAAATAAAT GAAA AAA TTTC TTTTTATTTTGAGTC TERM 815 737194 - 737169 - g 76 -7.8 -4.00882 | opp_overlap 737169 737188, overlap 737187 737188 CAATATAACATTAAA GATAAAAGTT TAAAAG AACTTTTATC TTTGCCAAAGATTAA TERM 816 737169 - 737194 + G 74 -8.5 -3.54459 | opp_overlap 737169 737187 737188, overlap 737188 CAATATAACATTAAA GATAAAAGTTT AAAA GAACTTTTATC TTTGCCAAAGATTAA napL 737016 - 737930 + | putative periplasmic protein napD 737923 - 738261 + | NapD protein homolog TERM 817 738392 - 738382 - g 82 -4 -5.54403 | opp_overlap 738382, overlap 738391 AAAAAAGAACAAAAA GAAT TAA ATTC TAGCTTAGAGAAAGA Cj0786 738274 - 738447 + | small hydrophobic protein TERM 818 738442 - 738430 - f 77 -4.9 -5.09685 | GAATATATAGAAAAA TTGTT TAA AACAA AATAGGCATTAAAAA Cj0787 738526 - 738774 + | conserved hypothetical protein Cj0787 Cj0788 738771 - 739262 + | hypothetical protein TERM 819 739440 - 739451 + GF 83 -3 -5.76633 | ATTGGGCGCACAAGG CTTT GGAA AAAG TTTTTTTGTATATAA cca 739231 - 740349 + | putative multifunctional Cca protein TERM 820 740693 - 740673 - g 88 -9.1 -4.04326 | opp_overlap 740671 740673 GAAGCAAATATCAAA GCTGTGATT TCA AATCACAAC TCTTTAAAGGATTTA purU 740346 - 741170 + | formyltetrahydrofolate deformylase Cj0791c 742441 - 741167 - | putative aminotransferase TERM 821 743017 - 743027 + G 78 -4 -5.45802 | overlap 743023 AAGGAAAAATTTGAA CTTT ATC AAAG TTTTTGTTTTGAACA Cj0792 742477 - 743355 + | conserved hypothetical protein Cj0792 flgS 743359 - 744378 + | signal transduction histidine kinase Cj0794 744495 - 745775 + | hypothetical protein murF 747260 - 745833 - | UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase Cj0796c 747980 - 747261 - | putative hydrolase Cj0797c 748197 - 747982 - | hypothetical protein TERM 822 748241 - 748212 - R 75 -7.3 -4.07568 | opp_overlap 748212, overlap 748214 TTTTTCTTCCTAAAA TACGCTAAATTTT ATGT ATAATTTAGCGCA TTTTGACTTAAAAGC TERM 823 748239 - 748214 - R 70 -7.7 -3.63744 | opp_overlap 748212, overlap 748212 TTTCTTCCTAAAATA CGCTAAATTTT ATGT ATAATTTAGCG CATTTTGACTTAAAA ddl 749297 - 748257 - | D-alanyl-alanine synthetase A ruvA 749858 - 749307 - | putative Holliday junction ATP-dependent DNA helicase Cj0800c 751693 - 749834 - | putative ATPase TERM 824 750056 - 750069 + g 76 -5.3 -5.055 | opp_overlap 750056 TTTATTTATAAAAGT TGCTT CAAA AAGCA TTTTTTGCAAATTGA TERM 825 751131 - 751155 + g 70 -6.5 -4.05033 | opp_overlap 751131 GTTTTTTCTTTATAA GTCAAGATCAG AGA TTCATCTTGAC TTTCTATAGGATCAA TERM 826 752681 - 752665 - g 70 -5.3 -4.56597 | TTTCTTTTCCAAAAA TTTTAAA ACA TTTAAAA AGTGATCAAGAAAAT TERM 827 752778 - 752796 + G 90 -8.2 -4.86731 | opp_overlap 752788 GTAGGTTCTGTGTTT GCTTTGGA AAT TTCAAAGC TTTTATTTGAAAGAG TERM 828 753049 - 753061 + G 74 -3.3 -5.38326 | CAGTAGCACTTTCAA GCTCT ATT AGTGC TTTTTATTTGCTTGG Cj0801 751797 - 753248 + | putative integral membrane protein (MviN homolog) cysS 753248 - 754636 + | cysteinyl-tRNA synthetase TERM 829 755107 - 755125 + G 80 -2.4 -5.73563 | overlap 755108 755109 TTGCGGTAGTCTTGT ATCAAAGT CCT ACTTTGGC TTTTTTTGCTTTAGT msbA 754629 - 756371 + | lipid export ABC transport protein TERM 830 756366 - 756352 - f 86 -5 -5.74086 | opp_overlap 756352 756352 AAAGCAAAGAAAAAA CAAAGC CCA GCTTTA GTTAATTTTAGTTAG pyrD 756403 - 757461 + | dihydroorotate dehydrogenase 2 TERM 831 758186 - 758174 - g 70 -4.1 -4.99638 | overlap 758175 ATATTTACATAAAAA CTCAG ATA CTGAA CTATTAGCCCTTGCT Cj0805 757458 - 758708 + | putative zinc protease dapA 758701 - 759597 + | dihydrodipicolinate synthase Cj0807 759597 - 760376 + | 7-alpha-hydroxysteroid dehydrogenase TERM 832 760407 - 760380 - T 100 -11.6 -5.27938 | opp_overlap 760378 760398, overlap 760398 ACTTTTAAATAAAAA TTAAGAAAAATC AATG GATTTTTCTTAA AAATATTTTTCAATC Cj0808c 760722 - 760417 - | small hydrophobic protein Cj0809c 761330 - 760734 - | putative hydrolase TERM 833 761276 - 761259 - G 70 -6.3 -4.08144 | TGGATCAATGATAAA TTCACCC TTTG GGGTAAA TAAAATATAGCAATT nadE 761404 - 762144 + | NH(3)-dependent NAD(+) synthetase TERM 834 762846 - 762866 + G 72 -2.5 -5.42259 | overlap 762849 ATTGTATGAGCATTT TATCAAGGC AAG GGCTTGTTA TTTTTTTAAAGATCA lpxK 762148 - 763074 + | tetraacyldisaccharide 4'-kinase TERM 835 763981 - 763969 - g 80 -6.3 -5.00884 | opp_overlap 763967 763969 ATTTGCGTGAAAAAA GTCTT AAG AAGAC TATTTCTCCAGCTAT thrC 763071 - 764483 + | threonine synthase TERM 836 765123 - 765111 - g 76 -2.7 -5.51165 | AAAATGGTAAAAAAA TCAAA ATG CTTGA AATTTCAACAACAAG kdsB 764480 - 765199 + | 3-deoxy-manno-octulosonate cytidylyltransferase Cj0814 765304 - 766059 + | hypothetical protein Cj0815 766075 - 766419 + | hypothetical protein Cj0816 766427 - 766597 + | hypothetical protein glnH 766692 - 767462 + | putative glutamine binding periplasmic protein TERM 837 767553 - 767581 + F 82 -4.1 -5.71295 | TAAAAGGATTTAAGA TAATGAAAAAAGT TGC ATTTTTTTTGTTA TTTTTGTTTTTATCT Cj0818 767555 - 767782 + | putative lipoprotein TERM 838 767885 - 767863 - g 91 -11.4 -3.14602 | opp_overlap 767877 767880, overlap 767861 TTTATTCTATCAAGA CCCTAGAAAA AGT CTTTCTAGGG CGAACAGCCTTAGTA TERM 839 767877 - 767901 + G 72 -5 -4.74161 | opp_overlap 767863 767861, overlap 767880 ACCCTAGAAAAAGTC TTTCTAGGGC GAACA GCCTTAGTAA TTCTTTTTGTTGTTT Cj0819 767808 - 768032 + | small hydrophobic protein fliP 768763 - 768029 - | flagellar biosynthesis protein FliP TERM 840 769109 - 769090 - g 70 -4.4 -4.85782 | overlap 769098 769100 GCGTTGAAAAAGAAA TTTTAGAA TATT TTCCAAAA ACACAAATTTTAGAG glmU 768906 - 770195 + | UDP-N-acetylglucosamine pyrophosphorylase TERM 841 770831 - 770820 - g 73 -5.8 -4.66833 | TTTCAAGTGGAAAAA TGGC AAAA GCCA TAGCTGATGCTTTTT TERM 842 771302 - 771288 - g 76 -8.6 -3.39657 | overlap 771286 ATGAAAATAAAAGCA CTTTGC AAA GCAAAG AAAAATTGGCATTTG dfp 770192 - 771346 + | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase TERM 843 771839 - 771867 + G 83 -7.6 -4.56775 | overlap 771836 CGCAAGGCATTAGTG TTTTTACACCTT TTGCC AAGGTGCAAAAA TTTTTAAACGAACAT Cj0823 771343 - 771960 + | hypothetical protein uppS 771964 - 772632 + | undecaprenyl diphosphate synthase Cj0825 772629 - 773405 + | putative processing peptidase Cj0826 773405 - 774430 + | putative integral membrane protein truA 774427 - 775152 + | tRNA pseudouridine synthase A ilvA 776360 - 775149 - | threonine dehydratase Cj0829c 776773 - 776360 - | putative CoA binding domain containing protein Cj0830 776892 - 777308 + | putative integral membrane protein TERM 844 777337 - 777313 - T 100 -11.6 -4.1552 | opp_overlap 777315 TACCTTGCTAAGAAA TACTCCACAT TCAAG ATGTGGAGTA TTGACAAATTGATCA TERM 845 777315 - 777335 + T 83 -10.5 -3.04501 | opp_overlap 777313 CCTTGCTAAGAAATA CTCCACATT CAA GATGTGGAG TATTGACAAATTGAT trmA 778368 - 777295 - | tRNA (uracil-5-)-methyltransferase Cj0832c 780098 - 778365 - | putative Na+/H+ antiporter family protein Cj0833c 780844 - 780095 - | putative oxidoreductase TERM 846 780440 - 780423 - G 70 -6.3 -4.17048 | gap 1, overlap 780424 780426 TTGCCTCCAAAATAA GGATTGCG TCC CGCAA-CC GAACCTAAGTTAAAA TERM 847 780440 - 780424 - G 73 -8.7 -3.09908 | overlap 780423 780426 TGCCTCCAAAATAAG GATTGCG TCC CGCAACC GAACCTAAGTTAAAA Cj0834c 782079 - 780841 - | ankyrin repeat-containing putative periplasmic protein acnB 784675 - 782129 - | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase ogt 784730 - 785182 + | methylated-DNA--protein-cysteine methyltransferase Cj0837c 786115 - 785174 - | conserved hypothetical protein Cj0837c TERM 848 785486 - 785505 + g 85 -3.6 -5.79595 | opp_overlap 785486 ATCAATCTTATTAAA GTCAAATA TTAT TTTTTGAC TTTTTTCTTTTAAAA TERM 849 785796 - 785784 - G 78 -4.1 -5.46706 | ATGTTAAAATAAAAA GCCTT GCA AAGAC TTAGTTCGTAAGATT metG 788005 - 786119 - | methionyl-tRNA synthetase TERM 850 787803 - 787791 - G 72 -6.3 -4.35524 | opp_overlap 787790 TTTTTAAATTCAAAA CTGAT TTT ATCAG CGTATTCTTGAGGAG Cj0839c 788212 - 788015 - | hypothetical protein fbp 789047 - 788205 - | fructose-1,6-bisphosphatase mobB 789540 - 789049 - | putative molybdopterin-guanine dinucleotide biosynthesis protein TERM 851 790005 - 789981 - gR 87 -11.5 -2.93089 | opp_overlap 789987, overlap 789978 GATTATTTTAAAGCA TCTCTTCCTAG TGT CAAGGAAGAGA CTAGGCTTGTAGCTA Cj0843c 791643 - 790018 - | putative secreted transglycosylase Cj0842 789636 - 790121 + | putative lipoprotein TERM 852 790546 - 790560 + gT 84 -5.8 -5.11937 | opp_overlap 790545 790548, overlap 790525 ATTGTCATAATAAGG CATTAT AAA ATAATG TTTTTTAAAATTATT TERM 853 791024 - 791046 + gT 75 -4.2 -5.19212 | overlap 791014 791022 791029 TTTATTTCTAGCATA GAATATCTAA ATT TTGGATTTTC TTTTTTAATAATAAT TERM 854 791029 - 791041 + gT 72 -2.7 -5.45813 | overlap 791022 791024 TTCTAGCATAGAATA TCTAA ATT TTGGA TTTTCTTTTTTAATA Cj0844c 791921 - 791640 - | putative integral membrane protein gltX 793219 - 791924 - | glutamyl-tRNA synthetase TERM 855 793406 - 793416 + G 72 -2.6 -5.48163 | opp_overlap 793406 TACTCTTTTTAAGTA TTTT TAT AAAA TTTTTTCCTTTATTT Cj0846 793305 - 794429 + | putative metallophosphoesterase psd 794426 - 795226 + | phosphatidylserine decarboxylase Cj0848c 795504 - 795223 - | conserved hypothetical protein Cj0848c Cj0849c 797660 - 795501 - | conserved hypothetical protein Cj0849c Cj0850c 798840 - 797653 - | putative MFS (Major Facilitator Superfamily) transport protein TERM 856 797928 - 797897 - G 71 -7.4 -3.73042 | overlap 797895 TTGCTTACTAAAACA TCATTTGCTCTAGC AAGT GCTAAAGCATATAA GCAAAATATTCCTAT Cj0851c 799321 - 798818 - | putative integral membrane protein TERM 857 799218 - 799206 - G 95 -6.3 -5.69023 | AAAACACTAAAAAAA GCTAT TTC ATAGC TTAAAAATGTATCTA Cj0852c 799650 - 799321 - | putative integral membrane protein hemL 800921 - 799647 - | glutamate-1-semialdehyde aminotransferase TERM 858 799951 - 799972 + g 79 -5.2 -5.29885 | TTTTTTGCTAATTTT CCAAGTTT GTCATA AAGCTTGG TTTTCTTTTTGGCTT Cj0854c 801265 - 800918 - | putative periplasmic protein TERM 859 801417 - 801407 - g 91 -4 -6.11229 | ATTAAAAGAAAAAAA TCAA TTT TTGA AAAGCAAAGGGATTG folD 801345 - 802193 + | methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase TERM 860 802733 - 802701 - g 71 -2.2 -5.48825 | gap 2, overlap 802703 802705 802707 TATGATCCAAAAAAA GATATAGAAAGCGATA TTT TA-CGCTTTCT-TAGC ATAGGTGATTTTGCC lepP 802203 - 803051 + | signal peptidase I TERM 861 803049 - 803075 + T 95 -11.1 -3.90316 | opp_overlap 803047 803052, overlap 803047 803052 GAGGATAAATTAAGC TAATGTTTGTG AAAAA CACAAACATTA TATTTTTAAAAGCGT TERM 862 803072 - 803052 - T 73 -8.4 -3.27667 | opp_overlap 803049 803047 803052, overlap 803047 GATAAATTAAGCTAA TGTTTGTG AAAAA CACAAACA TTATATTTTTAAAAG TERM 863 803052 - 803072 + T 83 -8.4 -4.07746 | opp_overlap 803052 803047, overlap 803049 803047 GATAAATTAAGCTAA TGTTTGTG AAAAA CACAAACA TTATATTTTTAAAAG TERM 864 803088 - 803102 + T 71 -2.8 -5.63103 | opp_overlap 803087 803088, overlap 803089 TTATATTTTTAAAAG CGTGAT TTC ATCACC TTTTTTTAATTCACC moeA 804233 - 803073 - | putative molybdopterin biosynthesis protein murA 805486 - 804230 - | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 865 805535 - 805503 - R 76 -6.6 -4.56597 | gap 1, opp_overlap 805503 TTTTTCCTTGAAAAA GTTTAAAAATGC-AT CATT ATAGCATTCTTAAAC TTTTGAAAAAATATA Cj0859c 805980 - 805552 - | hypothetical protein TERM 866 806689 - 806707 + G 100 -9 -5.72616 | opp_overlap 806686 GGGTTTAATTCACTA TGCTTTTA ACT TAAAAGCA TTTTTTTCTATGGGT Cj0860 806075 - 806947 + | putative integral membrane protein pabA 807500 - 806934 - | para-aminobenzoate synthase glutamine amidotransferase component II TERM 867 807264 - 807276 + g 85 -3.5 -5.79526 | overlap 807275 TCCTAAACATATACC TAAAA TTT TTTTA TTTTTTTTAAAATAT pabB 809281 - 807497 - | para-aminobenzoate synthase component I TERM 868 807750 - 807738 - G 72 -2.7 -5.40072 | TTTTCGTTAAAAAAA GCTAT GTC ATAAC ACAAGTTTTGCTGCC TERM 869 809041 - 809052 + g 74 -3 -5.40072 | CAATATCTTCTTTTT GAAA TTTT TTTC TTTTTTTAAAAGCAA TERM 870 809149 - 809167 + g 70 -6.2 -4.15664 | opp_overlap 809149 CAGTAAGCATTAAAA TATAAAAA TCA TTTTTATA TTTCTCTATAAATTT TERM 871 809167 - 809149 - G 74 -6.2 -4.36411 | opp_overlap 809149 CAGTAAGCATTAAAA TATAAAAA TCA TTTTTATA TTTCTCTATAAATTT xerD 810335 - 809271 - | DNA recombinase TERM 872 810412 - 810427 + H 74 -4.8 -5.01422 | opp_overlap 810412 CTTAGTAAAAAAAAG CTTTTT TAGG AAAAAG TTTGTTTTTATATGC TERM 873 810942 - 810930 - H 77 -4.9 -5.17507 | overlap 810920 AAAACTTAATAAAAA GTTTT ATC AAAAC CAAATTTCAAGGAGA Cj0864 810963 - 811322 + | putative periplasmic protein TERM 874 811916 - 811930 + G 79 -5 -5.25799 | ATGAATATGGCAATT TGCTGT CTT ATAGCA TTTTTATGTTGTTTT dsbB 811319 - 812119 + | putative disulfide oxidoreductase TERM 875 813622 - 813589 - f 100 -8.4 -5.09426 | opp_overlap 813589 813619 TTCAATCCTAAAAAA TAAATAAGCCCAAA TTTATT TTTGGGTTTATTTA TTTTTTTTAAATAAA TERM 876 813589 - 813622 + F 100 -10.6 -5.81412 | opp_overlap 813589, overlap 813619 TTCAATCCTAAAAAA TAAATAAGCCCAAA TTTATT TTTGGGTTTATTTA TTTTTTTTAAATAAA dsbA 813675 - 814316 + | putative protein disulphide isomerase TERM 877 814318 - 814353 + T 100 -12.2 -5.2112 | opp_overlap 814321, overlap 814321 GTAATATGAAATAAT AAATTTTTAAGGCAAT AAAA ATTGCCTTAAAAATTA TTTTTTGATCATATT TERM 878 814350 - 814321 - T 100 -13.9 -4.61162 | opp_overlap 814318 814321 ATATGAAATAATAAA TTTTTAAGGCAAT AAAA ATTGCCTTAAAAA TTATTTTTTGATCAT TERM 879 814321 - 814350 + T 100 -13.9 -4.68456 | opp_overlap 814321, overlap 814318 ATATGAAATAATAAA TTTTTAAGGCAAT AAAA ATTGCCTTAAAAA TTATTTTTTGATCAT Cj0873c 814563 - 814351 - | hypothetical protein Cj0874c 815099 - 814539 - | putative cytochrome C Cj0876c 815337 - 815050 - | putative periplasmic protein Cj0877c 815524 - 815432 - | hypothetical protein Cj0878 815545 - 815691 + | hypothetical protein Cj0879c 816301 - 815669 - | putative periplasmic protein TERM 880 815731 - 815762 + g 73 -6 -4.54449 | overlap 815732 CTTTAAAAGAAGGTG ATTGGATAAATAGT TTGC ACTCTTTATCCAAA TTTTCTATCCCGTAT TERM 881 815732 - 815761 + g 78 -9.5 -3.31946 | overlap 815731 TTTAAAAGAAGGTGA TTGGATAAATAGT TTGC ACTCTTTATCCAA ATTTTCTATCCCGTA Cj0880c 816540 - 816298 - | hypothetical protein TERM 882 816479 - 816459 - G 100 -9.1 -4.4009 | CTCCAGCGTATAAAA GCATAGCTT CTA AAACTATGC TAAGCTCATATTGTA Cj0881c 817570 - 816524 - | hypothetical protein TERM 883 817519 - 817509 - G 72 -2.6 -5.45802 | CTTTTAAAATAAAAA TTTA CTA TAAA TTGACAAGCATAGCC flhA 819753 - 817579 - | flagellar biosynthesis protein FlhA TERM 884 819617 - 819604 - G 70 -3.8 -5.16151 | opp_overlap 819604 TAAAGCCAAGAAAAA GTCC AAAATA GGAC TTGGTAAAGGAACTA Cj0883c 820150 - 819740 - | putative transcriptional regulator TERM 885 820036 - 820002 - G 76 -9.6 -2.66106 | opp_overlap 820001 820000 820003, overlap 819998 GATTTTAACAAGCCA TCTTTAGCTAAAGTTT GTA AAATTTTAGCTAAAAA ACTTTTAGGAATATC TERM 886 820392 - 820379 - g 70 -3.8 -5.03747 | AAATTCGCTAAAAAA CCAG GTGATA CTGG TTCAACAGAAGTTCA rpsO 820325 - 820597 + | 30S ribosomal protein S15 ftsK 823523 - 820683 - | putative cell division protein TERM 887 821215 - 821199 - G 82 -10.9 -2.61264 | opp_overlap 821198 821202, overlap 821198 821202 TTGTGTAGCTACAAT CAAGTGG ATT CCACTTG CTCTTGCCATTTGCG TERM 888 822800 - 822815 + g 77 -9 -3.63991 | TTTTACTAGCCTTTT GTGCGA AATT TCGCAC TTGTTGAGAATGCTC TERM 889 823251 - 823235 - G 88 -8.7 -4.51777 | ATAGTAGAAGTAAAA GAGCGAA AAT TCCGCTC CCAGTATGCCCCAAA TERM 890 823291 - 823280 - G 71 -2.2 -5.38321 | overlap 823289 AAATAGTAGAAAAAA TCGC ATAA GCAA GCTCTAGTATATAGC flaD 825885 - 823633 - | putative flagellin TERM 891 823696 - 823712 + g 78 -9.5 -3.22409 | opp_overlap 823689, overlap 823690 AAGAGAAGCTTGATA TGCAAGT TGA ACTTGCA TTAAATTCATCATTG TERM 892 826204 - 826188 - R 75 -9.5 -2.62983 | overlap 826191 CTCAGGGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCGA Cj0888c 828199 - 826268 - | ABC transport system ATP-binding protein TERM 893 826481 - 826497 + g 83 -2.2 -5.95286 | CTCATTTTCTTTGTA GCTCAA TTTTT TGGAGC TTTTTTCTTTTTGGT TERM 894 826878 - 826868 - G 70 -5.4 -4.65895 | GCTTTTATCTAAAAA TTCC TTA GGAA ATAGAAAATTTTTCA TERM 895 827154 - 827165 + g 74 -3 -5.42164 | opp_overlap 827154, overlap 827148 ATACGCGTTGAAAAA TCTT TAAA AAGA TTTTTATTGTTTATA TERM 896 827316 - 827332 + g 89 -9.5 -4.29049 | overlap 827313 TTTTTCGCTTCTTCA CGCATTT TAA AAATGCG TTCTTTTCGTCCTTC TERM 897 827989 - 828000 + g 70 -4.4 -4.89729 | opp_overlap 827989, overlap 827983 CAACGGTTTGTGAAA GCAT GGCT ATGC TTTTTCCATTTTGTC TERM 898 828152 - 828163 + g 74 -3 -5.43866 | TTCATTTAAAACTAT TTTG TCTC CAAA TTTTTTTGAAGCTTC Cj0889c 829492 - 828203 - | putative sensory trasnduction histidine kinase TERM 899 828833 - 828853 + g 93 -5.5 -6.12458 | AAGCTGAGTATTTTT TAAAGTGAT TTT ATCGCTTTG TTTTTTATTTTTTTG TERM 900 829353 - 829365 + g 76 -2.7 -5.54885 | AATTTTAAAACATCA TCAAG GCT TTTGA TTTTTTGTTCATATT Cj0890c 830148 - 829486 - | putative sensory transduction transcriptional regulator serA 831718 - 830135 - | D-3-phosphoglycerate dehydrogenase Cj0892c 832203 - 831715 - | putative periplasmic protein rpsA 833873 - 832203 - | 30S ribosomal protein S1 ispH 834838 - 834005 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase aroA 836114 - 834828 - | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 901 835635 - 835652 + g 82 -7.1 -4.77757 | opp_overlap 835645, overlap 835645 AGCCGAAGAAATTTC GCTTTTA AAAT TAAAAGC TTTTAATTTTTGACC pheT 838432 - 836111 - | phenylalanyl-tRNA synthetase subunit beta TERM 902 836235 - 836217 - G 72 -2.5 -5.45802 | overlap 836218 TCCCTAAAAGAAAAA CTTATAG TAATG CTATAAA ATTCTTTAAGGTTTT TERM 903 837342 - 837358 + g 70 -8.1 -3.18274 | AGCAAAAAATCCATT CCTAAAT TTA ATTTAGG TTCACTTCCCCTAAA pheS 839421 - 838429 - | phenylalanyl-tRNA synthetase subunit alpha Cj0898 839544 - 839909 + | putative histidine triad (HIT) family protein TERM 904 839907 - 839941 + T 91 -10.3 -4.37886 | opp_overlap 839916, overlap 839910 CCTCAAGCTTTATTT TAATTTAAATGGTAG AAAAA CTACCATTTAAACTA TTTTGTCAAAGGTAG TERM 905 839910 - 839938 + T 88 -12 -2.8733 | opp_overlap 839916, overlap 839907 CAAGCTTTATTTTAA TTTAAATGGTAG AAAAA CTACCATTTAAA CTATTTTGTCAAAGG thiJ 840508 - 839939 - | 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein Cj0900c 840680 - 840501 - | small hydrophobic protein Cj0901 840763 - 841506 + | putative amino acid ABC tansporter permease protein TERM 906 841863 - 841847 - g 83 -3 -5.66684 | GAAGCCATAAAAAAA GCAAAA TTACT TCTTGC TAAGGTGGGTTTAGC glnQ 841499 - 842227 + | putative glutamine transport ATP-binding protein TERM 907 842252 - 842228 - T 90 -11.6 -3.32769 | opp_overlap 842228, overlap 842221 GTTTTAAATCATTAA TTCATAAGCC ACTAA GGCTTATGAA TTTTAATCCCAACAT TERM 908 842228 - 842252 + T 100 -11.6 -4.25283 | opp_overlap 842228 842221 GTTTTAAATCATTAA TTCATAAGCC ACTAA GGCTTATGAA TTTTAATCCCAACAT Cj0903c 843721 - 842255 - | putative amino-acid transport protein Cj0904c 844292 - 843825 - | putative RNA methylase alr 845281 - 844295 - | alanine racemase Cj0906c 846259 - 845282 - | putative periplasmic protein Cj0908 846415 - 846885 + | putative periplasmic protein Cj0909 846971 - 847390 + | putative periplasmic protein TERM 909 847633 - 847593 - g 74 -9.3 -2.82668 | opp_overlap 847601, overlap 847592 847601 847624 CCCTAAATCCCAAAC CCTTACAATCTTTAGATGT TAC AAATCTAAAGATTGTAAAT CTAGGAAATTATAAC Cj0910 847394 - 847846 + | putative periplasmic protein TERM 910 848396 - 848374 - g 73 -8.6 -3.15197 | opp_overlap 848366 848368 848378, overlap 848377 CAAGAAATTTTAAGA GAACTTAGAA TTT TTCTAAATTC TCAATAATTATACTT Cj0911 847843 - 848403 + | putative periplasmic protein TERM 911 848424 - 848447 + T 77 -9.6 -3.01497 | opp_overlap 848421 848414 848424, overlap 848420 CTTAAGCAAAAAGAT CGGTTGAGAG GTAT CTTTCAGCCG TATCGTTTAGCATAG cysM 849309 - 848410 - | cysteine synthase TERM 912 849429 - 849411 - R 86 -8.9 -4.27694 | TTAATTAAGAAAGAA GGCTAGA ATTTA TCTAGCC GAAGTTTTATTTTTT hupB 849732 - 849436 - | DNA-binding protein HU homolog TERM 913 849814 - 849829 + r 71 -4.8 -4.86216 | AACAGCTTTTTTTAA GTTTTT TTCA AAAAAC TTTATTATTTTTTCT ciaB 851666 - 849834 - | CiaB protein TERM 914 850660 - 850682 + g 76 -6.4 -4.58563 | overlap 850658 CAAATATAAAGTTGA GTTTTTTCTA TAT TAGATAAAAC TTCTTTTTCTAATTC TERM 915 851144 - 851155 + g 81 -5.8 -5.22312 | TTCGCTCACAAATTT CTCC TTCT GGAG TTTTTTGATATAAAT Cj0915 851728 - 852141 + | putative hydrolase Cj0916c 852378 - 852181 - | conserved hypothetical protein Cj0916c TERM 916 852349 - 852326 - G 70 -9 -2.56715 | AGTCCCACCAAGGGA TGAAAAAACC TTTC GGCTTTTTCA TAATAATACTTAAAT cstA 854470 - 852359 - | putative integral membrane protein (CstA homolog) TERM 917 852540 - 852555 + g 72 -4.8 -4.95618 | GCTATTGAAATTTCT TTTCTA ATTG TAGAAA TTTCTTTTTCATCTT TERM 918 853140 - 853150 + g 73 -8.2 -3.40052 | opp_overlap 853139, overlap 853139 CCTATAGCAAAAGTC GGGG CTC CCCC TGTTCTTGAAAGTAT TERM 919 853499 - 853487 - G 78 -4.1 -5.47159 | GGTAATAAATAAAAA TGGAA ACA CTCCA CCTGCAAATACTGGA TERM 920 854633 - 854601 - R 72 -4.3 -4.94902 | opp_overlap 854607, overlap 854602 854607 TAAGTAGCATAAAAA TGAAAAGCTTAAAAA TAA TCTTTAAGCTTTTTT AATCTAAATAAAGAG TERM 921 854632 - 854602 - R 74 -7.8 -3.55857 | opp_overlap 854607, overlap 854601 854607 AAGTAGCATAAAAAT GAAAAGCTTAAAAA TAA TCTTTAAGCTTTTT TAATCTAAATAAAGA TERM 922 854627 - 854607 - R 86 -7.7 -4.82678 | opp_overlap 854607, overlap 854602 854601 GCATAAAAATGAAAA GCTTAAAAA TAA TCTTTAAGC TTTTTTAATCTAAAT TERM 923 854607 - 854627 + r 81 -5.5 -5.22312 | opp_overlap 854602 854601 854607 GCATAAAAATGAAAA GCTTAAAAA TAA TCTTTAAGC TTTTTTAATCTAAAT prsA 855566 - 854637 - | ribose-phosphate pyrophosphokinase TERM 924 855677 - 855642 - R 87 -10.8 -3.5771 | opp_overlap 855650, overlap 855650 AAAAACTGCTGTAAA TTTAAAAAGCTTATAT AAAA ATATAAGCTTTTTTAA GAAATATAAGCTGTC TERM 925 855650 - 855669 + r 95 -8 -5.02476 | opp_overlap 855642 855650 CTGTAAATTTAAAAA GCTTATAT AAAA ATATAAGC TTTTTTAAGAAATAT TERM 926 855669 - 855650 - R 89 -8 -4.81249 | opp_overlap 855650, overlap 855642 CTGTAAATTTAAAAA GCTTATAT AAAA ATATAAGC TTTTTTAAGAAATAT Cj0919c 856333 - 855674 - | putative ABC-type amino-acid transporter permease protein Cj0920c 857096 - 856344 - | putative ABC-type amino-acid transporter permease protein peb1A 857877 - 857098 - | bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein pebC 858627 - 857899 - | ABC-type amino-acid transporter ATP-binding protein TERM 927 858258 - 858222 - G 100 -12.5 -3.59979 | opp_overlap 858217 GTTGTCCACCTGAAA GGGTTGCTGGATAAA CATTTGC TTTATCCAGCAAACC TACAACTTTTAAATA cheR 859551 - 858763 - | putative MCP protein methyltransferase cheB' 860121 - 859567 - | putative MCP protein-glutamate methylesterase rpiB 860287 - 860724 + | ribose 5-phosphate isomerase Cj0926 860724 - 861056 + | hypothetical protein apt 861053 - 861601 + | adenine phosphoribosyltransferase Cj0928 861620 - 862216 + | putative integral membrane protein (dedA family) pepA 862213 - 863664 + | leucyl aminopeptidase Cj0930 863661 - 864764 + | translation-associated GTPase TERM 928 864781 - 864758 - T 78 -9.7 -3.28497 | opp_overlap 864757 864755 864758 GCATTTTAAATTCAA TGTTTAGGC AAAATA GCCTAAACA ATATTTATAAATTTT TERM 929 864758 - 864781 + T 75 -9.7 -2.75876 | opp_overlap 864758, overlap 864757 864755 GCATTTTAAATTCAA TGTTTAGGC AAAATA GCCTAAACA ATATTTATAAATTTT argH 866168 - 864786 - | argininosuccinate lyase TERM 930 865684 - 865672 - G 83 -3.4 -5.71295 | overlap 865676 ATATAAAAAGAAAAA CTCA CAGGC TGAG CGTGCTGTAAATGTG pckA 867752 - 866178 - | phosphoenolpyruvate carboxykinase pycB 869564 - 867765 - | putative pyruvate carboxylase B subunit TERM 931 869626 - 869607 - R 72 -4.4 -5.01497 | opp_overlap 869607 ATTATTATACAAAAA TTTGATAA CACA TTACCAAA ATTATTGCTATAGGC Cj0934c 870936 - 869596 - | putative sodium:amino-acid symporter family protein TERM 932 869691 - 869718 + g 74 -2.2 -5.5112 | AAATTTTTCGACTTA TAAATTTAGAAA AAAT TTTATAAATTTG TTTTTTATTCATAAA TERM 933 870690 - 870712 + g 72 -7.8 -3.66095 | CGCCATATCGCCATC TATTGCCATA TTT TATGGCAAGA TTTGAATAAGCATTT Cj0935c 872283 - 870949 - | putative sodium:amino-acid symporter family protein atpE 872516 - 872854 + | F0F1 ATP synthase subunit C TERM 934 872866 - 872878 + F 93 -6.2 -5.37043 | opp_overlap 872866 ATAAAACTTATCAAA GCCC TTTTT GGGC TTTTTTCTATGCGGT TERM 935 873113 - 873086 - f 79 -5.8 -5.00616 | opp_overlap 873074 873105, overlap 873071 GGTTTTTTTAAAAAA CTTAAAAAATAT TAAG ATTTTTTTTAAG TATAAAGAATATAAT TERM 936 873379 - 873394 + G 76 -2.6 -5.6473 | gap 1 TTATTGGATTGTTTA GCTG-TA TAC TAGCAGC TTTTTTTGCTATTCT TERM 937 873758 - 873773 + G 71 -7.6 -3.48208 | overlap 873757 873765 TTTATTTGGTGCCTC TGCAAC CCCT GTTGCA CTTTTTGCTATAGGT TERM 938 873849 - 873865 + G 72 -8.1 -3.37944 | ATAGTTGTCATCTTT GCTAAAA TGA TTTTAGC TCCTTTATTTTTTGT Cj0937 873171 - 874082 + | putative integral membrane protein aas 877602 - 874090 - | 2-acyl-glycerophospho-ethanolamine acyltransferase TERM 939 875261 - 875273 + g 77 -4.9 -5.2696 | opp_overlap 875248 ACTGCTAGCATCATG CTAAA AAT TTTAG TTTTTTGCATTTTAA Cj0939c 878027 - 877647 - | hypothetical protein TERM 940 877786 - 877802 + g 82 -5.1 -5.37345 | AATTCTGCAACCTTA CTAGCAA ATT TTGCAAG TTTTTTATCATTACA glnP 879613 - 878828 - | putative glutamine transport system permease Cj0941c 880841 - 879636 - | putative permease TERM 941 879917 - 879949 + g 82 -10.7 -2.64144 | opp_overlap 879884, overlap 879891 879916 879919 AACTCTTTTTTACCT CATTTTTGCTTGCAC CTA GAGCAAGTAAAAGTG CTATTTCACTGCGAC TERM 942 880121 - 880135 + g 72 -4.4 -5.03715 | CAGCATAATCATCTT TTAAAT AAG ATTTAA TTTTTTCAACATCCT TERM 943 880798 - 880769 - G 70 -5.9 -4.20797 | gap 1, opp_overlap 880769, overlap 880771 CCAAAAGCATAGAAA GAT-TGATAAAGGG TTG CTCTTTATCAAATC TTAAATACTTAAAAA TERM 944 880769 - 880798 + g 70 -8.1 -3.13164 | gap 1, opp_overlap 880769 880771 CCAAAAGCATAGAAA GATT-GATAAAGGG TTG CTCTTTATCAAATC TTAAATACTTAAAAA TERM 945 880795 - 880771 - G 77 -8.7 -3.68627 | opp_overlap 880769, overlap 880769 AAAAGCATAGAAAGA TTGATAAAGGG TTG CTCTTTATCAA ATCTTAAATACTTAA secA 883426 - 880838 - | preprotein translocase subunit SecA lolA 883526 - 884035 + | outer-membrane lipoprotein carrier protein Cj0944c 884766 - 884032 - | putative periplasmic protein TERM 946 884763 - 884783 + g 73 -5.6 -4.58859 | TTAAAAATATTTTTT TCATTTAA TGCCT TTAAATGA TTTGTTCTTGTATTT Cj0945c 886119 - 884776 - | putative helicase TERM 947 885953 - 885934 - G 87 -3.5 -5.95539 | overlap 885951 CCCTAAACAAAAAAA GCTGTGT AAAGTA ACACCGC CTATATTAAACGCCG TERM 948 886948 - 886929 - g 84 -6.6 -5.23765 | opp_overlap 886928 886929 CAAAGAAGATAAAAA CTATTTTT ATGG AAAAATAG GTTCTAAAAAATATA TERM 949 887221 - 887209 - g 81 -2.7 -5.77853 | AATTCTCAAAAAAAA GATTT TTT AAACC GCTTTGGGAAAGCTT Cj0946 886168 - 887514 + | putative lipoprotein TERM 950 887542 - 887512 - T 100 -10 -4.87008 | opp_overlap 887515, overlap 887515 AATATACAAAACAAA TAAGATTTATTGAT TTA ATCAATAAATCTTT TAGTTAAATCTGTAA TERM 951 887539 - 887515 - T 100 -11.7 -4.49673 | opp_overlap 887515, overlap 887512 ATACAAAACAAATAA GATTTATTGAT TTA ATCAATAAATC TTTTAGTTAAATCTG TERM 952 887515 - 887539 + T 100 -11.7 -4.44548 | opp_overlap 887515 887512 ATACAAAACAAATAA GATTTATTGAT TTA ATCAATAAATC TTTTAGTTAAATCTG Cj0947c 888398 - 887526 - | putative carbon-nitrogen hydrolase TERM 953 888039 - 888027 - G 70 -3.5 -5.14626 | AGGAGTAAAATAAAA TTTTT CAT AAAAA CAAGGATCATCGGGT Cj0948c 889282 - 888395 - | putative cation efflux family protein TERM 954 888676 - 888705 + g 88 -9.5 -4.07568 | opp_overlap 888693, overlap 888677 888679 TAGGTAAAGCCTCAT CCATTAAAAAAGC TAAA GCTTTTTTAATGA TTTTAAAAGCAGAAA TERM 955 888677 - 888704 + g 100 -13 -3.04398 | opp_overlap 888693, overlap 888676 888679 AGGTAAAGCCTCATC CATTAAAAAAGC TAAA GCTTTTTTAATG ATTTTAAAAGCAGAA TERM 956 888679 - 888702 + g 78 -9.8 -3.08032 | opp_overlap 888693, overlap 888677 888676 GTAAAGCCTCATCCA TTAAAAAAGC TAAA GCTTTTTTAA TGATTTTAAAAGCAG TERM 957 889251 - 889264 + g 80 -2.3 -5.75945 | opp_overlap 889248 ATAGCACATAAACTT GCTAC AAGA GTTGC TTTTTTTTGCAAACT Cj0949c 890256 - 889279 - | putative peptidyl-arginine deiminase family protein TERM 958 889404 - 889414 + g 72 -4 -5.01535 | AAAGTCTTTTAGCTA TGAT TTC ATCA TTTTTATCCTTGTAA TERM 959 890328 - 890345 + r 89 -11.3 -3.59649 | opp_overlap 890321 890327 890326 AAATTTAAGAAGATT GCCTCGA TATT TCGAGGC TTTAGGGCATTATTT Cj0950c 890789 - 890355 - | putative lipoprotein Cj0951c 891473 - 890799 - | putative MCP-domain signal transduction protein Cj0952c 892382 - 891663 - | putative HAMP containing membrane protein TERM 960 892385 - 892411 + r 76 -8.2 -3.6581 | opp_overlap 892384 892396, overlap 892382 TTTTAAACATCATAG TTTCCTAAAAAT AAA ATTTTTCGGAAA TATTTTACACATAAT purH 894010 - 892478 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 961 893388 - 893398 + g 70 -4 -4.93898 | overlap 893385 TTTTCTCCATATTTT GTAT CAA ATAC TTTTTGTCCTACTAT Cj0954c 894783 - 894013 - | putative DnaJ-like protein TERM 962 894120 - 894132 + g 72 -2.7 -5.41746 | TGTTTGCATTTAAAA TATCA GGA TGGTA TTTTTTTGCCAAATT purL 896966 - 894780 - | phosphoribosylformylglycinamidine synthase II trmE 898305 - 896977 - | tRNA modification GTPase TrmE Cj0957c 899116 - 898298 - | hypothetical protein TERM 963 898533 - 898520 - G 70 -5.3 -4.58395 | TTGATTTTCTAAAAA TTGAG CGAT CTCAA GGCGCACTAAAAGAT TERM 964 898935 - 898953 + g 95 -6.1 -6.02546 | GTAAATTCTTTTTTA GGATTTT TTTTC AAAATCC TTTTTTTTGCTTTAG TERM 965 899121 - 899133 + r 78 -3.3 -5.70829 | TCGATTTTCATTTTT CATGC TCC GCTTG TTTTTTTGTGATGTT Cj0958c 900706 - 899120 - | putative inner membrane protein translocase component YidC TERM 966 900183 - 900209 + g 70 -6 -4.22948 | opp_overlap 900183 GGATAAAAAGTAATA TCTTTTTCGATT TTC AATCCAGAAAGA TTTTGAGTGAGTTTT TERM 967 900273 - 900258 - G 70 -6.2 -4.19587 | overlap 900256 TCATCAACAAAAAGA TTGCTA GCGT TAGCAA CATAAGGAATTTTAA TERM 968 900426 - 900414 - G 75 -4.1 -5.27335 | TCTTTTAAATAAAAA GCAGA AAT TCTAC CAAAAGAGTCAATTT Cj0959c 901044 - 900703 - | conserved hypothetical protein Cj0959c rnpA 901367 - 901041 - | ribonuclease P protein component TERM 969 901235 - 901249 + g 93 -4.3 -6.15828 | TTCCAACTTTTTTAC TAGCA ACAAC TGCTA TTTTTTTTTCATAAC rpmH 901498 - 901364 - | 50S ribosomal protein L34 Cj0962 901629 - 902108 + | putative acetyltransferase Cj0963 902105 - 902713 + | hypothetical protein TERM 970 902730 - 902720 - g 76 -2.6 -5.52384 | opp_overlap 902714 902711 902720 TTTTTATGAAAAAAA TATT TTT AATA TTTTTCTTATCTTGC Cj0964 902710 - 903900 + | putative periplasmic protein TERM 971 903880 - 903912 + T 74 -7.9 -3.65214 | opp_overlap 903877 903881 903882, overlap 903881 903881 CAAGGCAAACAAGCA AGCTTTGAAGAATTA AAA TAATTCTTCAAAGAG CTTTTTTAACTGCAT TERM 972 903881 - 903911 + T 84 -11.4 -2.78405 | opp_overlap 903877 903881 903882, overlap 903880 903881 AAGGCAAACAAGCAA GCTTTGAAGAATTA AAA TAATTCTTCAAAGA GCTTTTTTAACTGCA TERM 973 903881 - 903913 + T 81 -5.2 -5.09895 | gap 2, opp_overlap 903877 903881 903882, overlap 903880 903881 AAGGCAAACAAGCAA GCT-TT-GAAGAATTA AAA TAATTCTTCAAAGAGC TTTTTTAACTGCATA TERM 974 903911 - 903881 - T 89 -11.4 -3.63326 | opp_overlap 903881 903880 903881, overlap 903877 903882 AAGGCAAACAAGCAA GCTTTGAAGAATTA AAA TAATTCTTCAAAGA GCTTTTTTAACTGCA TERM 975 903910 - 903882 - T 100 -14.9 -2.76911 | opp_overlap 903881 903880 903881, overlap 903881 903877 AGGCAAACAAGCAAG CTTTGAAGAATTA AAA TAATTCTTCAAAG AGCTTTTTTAACTGC Cj0965c 904266 - 903892 - | putative acyl-CoA thioester hydrolase TERM 976 905271 - 905259 - g 77 -4.9 -5.22104 | TAAAAAACAATAAAA TCTTT ATC AAAGA TGCTAATATGATTAT TERM 977 906231 - 906219 - g 71 -4.9 -4.77165 | opp_overlap 906219 906223, overlap 906223 CTGCTTATAATAAAA TCATT ATC AATGA TACTTTATTTGGTGT Cj0967 904409 - 906697 + | putative periplasmic protein TERM 978 906962 - 907007 + F 100 -13.9 -4.89852 | gap 1, opp_overlap 906967 906971 906998, overlap 906967 ACATTTATGCAAGGA TA-AAATAAATCATTCCTATTT TTA AGATAGGAATGATTTATTTGTA TTTTTATAAATATAA TERM 979 906967 - 907001 + F 100 -15.4 -4.60808 | opp_overlap 906967 906971 906998, overlap 906962 TATGCAAGGATAAAA TAAATCATTCCTATTT TTA AGATAGGAATGATTTA TTTGTATTTTTATAA TERM 980 907001 - 906967 - f 100 -13.2 -4.55491 | opp_overlap 906967 906962, overlap 906971 906998 TATGCAAGGATAAAA TAAATCATTCCTATTT TTA AGATAGGAATGATTTA TTTGTATTTTTATAA TERM 981 906997 - 906971 - f 100 -9.6 -4.82863 | opp_overlap 906967 906962, overlap 906967 CAAGGATAAAATAAA TCATTCCTATTT TTA AGATAGGAATGA TTTATTTGTATTTTT Cj0970 907408 - 907710 + | hypothetical protein Cj0971 907713 - 908105 + | hypothetical protein Cj0972 908107 - 908430 + | hypothetical protein Cj0973 908554 - 908664 + | hypothetical protein TERM 982 908710 - 908738 + G 83 -9.7 -3.63569 | opp_overlap 908712, overlap 908712 908719 GCTCAAGATGATTAA AATCCAAAAGGTT AAA AGCCTTTTGGATC TTGTTAAAAAATTAA TERM 983 908712 - 908736 + G 100 -12.3 -3.39556 | opp_overlap 908712, overlap 908710 908719 TCAAGATGATTAAAA TCCAAAAGGTT AAA AGCCTTTTGGA TCTTGTTAAAAAATT TERM 984 908736 - 908712 - g 91 -10.1 -4.35461 | opp_overlap 908712 908710 908719 TCAAGATGATTAAAA TCCAAAAGGTT AAA AGCCTTTTGGA TCTTGTTAAAAAATT TERM 985 908770 - 908758 - g 76 -2.7 -5.59502 | overlap 908767 TAAAAAATTAAAAAA CAAAC AAA GTTTA AAGATTAAAAATCAA Cj0974 908693 - 908833 + | hypothetical protein TERM 986 909255 - 909245 - g 75 -4 -5.33785 | AACGATTACAAAAAA GAAA GTA TTTC AGTTCAAGACTTACA TERM 987 909376 - 909386 + G 74 -6.8 -4.20531 | opp_overlap 909375 909376 AATTCAAATCAATAT CACC TTA GGTG TTTTAGGTAAATATG Cj0975 908891 - 910615 + | putative outer-membrane protein TERM 988 910708 - 910678 - f 85 -8.5 -4.39426 | opp_overlap 910671 TATATTGCCATAAAA GCTTTTAATGTTA TAATT TAGCATTAAAAGC AAATGTCAAGGATAA Cj0976 910711 - 911601 + | putative methyltransferase Cj0977 911674 - 912252 + | hypothetical protein Cj0978c 912426 - 912253 - | putative lipoprotein Cj0979c 912962 - 912435 - | putative secreted nuclease TERM 989 913282 - 913266 - g 72 -5.1 -4.71828 | AGTTTATGAAGAAAA TGGCTTT TTA AGAGCCA AAAATTCAAGTCTTG Cj0980 913030 - 914298 + | putative peptidase cjaB 915528 - 914281 - | putative MFS (Major Facilitator Superfamily) transport protein TERM 990 914344 - 914325 - G 81 -7.2 -4.57073 | TACTTCTTGCAAAAA CGCGTTTT AACA AAAACACG CAAAGCAAGGAGCAA TERM 991 914834 - 914846 + g 70 -6.3 -4.11484 | opp_overlap 914834 914832 914829 AAACAAACAAGCATA CTCAT TTT ATGAG TTTTCAAAGCTTCAA TERM 992 914980 - 914962 - G 75 -4.6 -5.15117 | TAAAATTCCAAAAAA TCCTCCTA TGA TAAAAGGA ATTCTCCAAGCATAG TERM 993 915547 - 915567 + r 80 -9.8 -3.45031 | opp_overlap 915547 915546 915551, overlap 915551 TTATCCTAAATCAAC TAAAGGGC AAAAA GCCCTTTA TTAAATTTTTCCACC TERM 994 915567 - 915547 - R 75 -9.8 -2.71497 | opp_overlap 915547 915551, overlap 915546 915551 TTATCCTAAATCAAC TAAAGGGC AAAAA GCCCTTTA TTAAATTTTTCCACC TERM 995 915563 - 915551 - R 70 -6.2 -4.04394 | opp_overlap 915547 915551, overlap 915547 915546 CCTAAATCAACTAAA GGGC AAAAA GCCC TTTATTAAATTTTTC TERM 996 915551 - 915563 + r 72 -6.2 -4.35017 | opp_overlap 915551 915547 915546, overlap 915547 CCTAAATCAACTAAA GGGC AAAAA GCCC TTTATTAAATTTTTC cjaA 916407 - 915568 - | putative amino-acid transporter periplasmic solute-binding protein TERM 997 916582 - 916606 + H 78 -10.3 -2.60032 | overlap 916581 916580 TGTTTAAATTTTAAG TAAAAAAAGAT ATA ATCTTTTTTTA AATTTTTAAGGAGAA Cj0983 916626 - 917744 + | putative lipoprotein TERM 998 917806 - 917772 - f 77 -6 -4.7657 | gap 1, opp_overlap 917772, overlap 917763 TAAAAACTTCAAAAA CATTAAAAGCAA-GA TTAAAT TCTTTGCTCTTAATG TTTTCATAATATTAA Cj0984 917836 - 918576 + | conserved hypothetical protein Cj0984 hipO 919731 - 918580 - | hippurate hydrolase TERM 999 919453 - 919471 + g 71 -6.8 -4.02856 | CATTACATTTTCTTT TTTGCTTT TAT AAGGCAAA TTTGTGCATTCTTGT Cj0986c 919921 - 919733 - | putative integral membrane protein TERM 1000 919850 - 919822 - G 100 -9.7 -4.59653 | opp_overlap 919827, overlap 919827 919839 AAGCAAAAATATAAA CAAAACCCAAAGT AAA ACTATGGGTTTTA TCAACACTCCAAGAT TERM 1001 919845 - 919827 - G 86 -7.4 -5.15682 | opp_overlap 919827, overlap 919822 919839 AAAATATAAACAAAA CCCAAAGT AAA ACTATGGG TTTTATCAACACTCC TERM 1002 919827 - 919845 + g 79 -7.4 -4.37886 | opp_overlap 919822 919827 919839 AAAATATAAACAAAA CCCAAAGT AAA ACTATGGG TTTTATCAACACTCC Cj0987c 920953 - 919988 - | putative MFS (Major Facilitator Superfamily) transport protein Cj0988c 921203 - 920967 - | hypothetical protein TERM 1003 921030 - 921040 + gH 81 -2.6 -5.82281 | TTTAATTATTTTTTT TAAT TTA ATTA TTTTTTTATATATTT Cj0989 921188 - 921394 + | hypothetical protein Cj0990c 922158 - 921397 - | hypothetical protein Cj0991c 923420 - 922155 - | putative oxidoreductase ferredoxin-type electron transport protein TERM 1004 922779 - 922764 - G 76 -5.4 -5.03715 | ATCACCCGTAAAAAA TTGCGG CGCT CCACAA CATACTTGTTCTTTC hemN 924777 - 923422 - | coproporphyrinogen III oxidase TERM 1005 923634 - 923609 - G 70 -6.3 -4.11773 | opp_overlap 923608 923609 AAATACTCCTTAAAA TCAATGGAAAA TTCT TTTTCTATTGA CTTAATATCAAGCTT TERM 1006 924465 - 924449 - G 71 -2.1 -5.42259 | overlap 924451 TTAGCGCTAAAAAAA GTTGGAG TTC CGCCACC AAAGTGCATTTGCAC Cj0993c 925255 - 924764 - | hypothetical protein argF 926172 - 925252 - | ornithine carbamoyltransferase hemB 927152 - 926169 - | delta-aminolevulinic acid dehydratase TERM 1007 927574 - 927548 - g 75 -7.4 -4.11623 | overlap 927538 TACGATTAAAGCAAA TCATCAGCTT GGCTTTA AAGCCGATGA GAGAACTTATGAAAT ribA 927210 - 927770 + | GTP cyclohydrolase II Cj0997 927771 - 928337 + | putative methyltransferase (GidB homolog) TERM 1008 928349 - 928334 - T 79 -9 -3.60805 | opp_overlap 928334 ATATTGTATTTTAAA GTAGCC CTAA GGCTAC TTTTTATTCTGCTAA TERM 1009 928334 - 928349 + T 100 -9 -5.22006 | opp_overlap 928334 ATATTGTATTTTAAA GTAGCC CTAA GGCTAC TTTTTATTCTGCTAA Cj0998c 928925 - 928353 - | putative periplasmic protein TERM 1010 928526 - 928537 + g 82 -4.4 -5.64274 | opp_overlap 928526 TGGTATAAGTTAAAG GTAC AATA GTAC TTTTTTTATCCATAG TERM 1011 929010 - 928994 - R 72 -3.1 -5.28831 | overlap 929004 ATTAATAAAATAAAA TTTTCTA AAA TAAAAAA TAATTTTTATTACCA Cj0999c 930117 - 929020 - | putative integral membrane protein TERM 1012 929982 - 929972 - G 76 -6.8 -4.47259 | ATGATAATAGCAAAA GCAG TCG CTGC TAAATGAGTGGTATC TERM 1013 930191 - 930201 + H 81 -2.6 -6.11243 | opp_overlap 930180, overlap 930180 TATATTATTTTAATT TTTA TAA TAAA TTTTTTTTATTAAAT TERM 1014 930990 - 930977 - g 70 -3.9 -5.07941 | AAAAGCATAGAAAAA GAATT AAAA AATTC AACACTTTATGAAAT Cj1000 930230 - 931111 + | putative transcriptional regulator (LysR family) rpoD 931191 - 933059 + | RNA polymerase sigma factor RpoD Cj1002c 933587 - 933075 - | putative phosphoglycerate/bisphosphoglycerate mutase Cj1003c 934102 - 933584 - | putative integral membrane protein TERM 1015 933843 - 933832 - G 78 -4.4 -5.46276 | AATACACATAAAAAA CACT TAAA AGTG AGCACAACAATCCGC Cj1004 934201 - 934617 + | putative periplasmic protein Cj1005c 936242 - 934626 - | putative membrane bound ATPase Cj1006c 937496 - 936246 - | putative MiaB-like tRNA modifying enzyme TERM 1016 936406 - 936420 + g 95 -7.2 -5.86965 | opp_overlap 936405 TTTTCTACCAAAACT TCAAGT GAA ACTTGA TTTTTTTTCCTAAAT TERM 1017 937471 - 937484 + g 73 -3.9 -5.30616 | opp_overlap 937471 GTGCGACACCCAAAG GTTTT AAAA AAAAC TTTTTCTTTCAATCC TERM 1018 937510 - 937531 + r 72 -8.9 -2.63549 | overlap 937509 937506 937512 AATCCTTATTCCTTG CATGAAAAT ACAT ATTTTCATG ATGTTGTTCAAAATG Cj1007c 939064 - 937493 - | putative mechanosensitive ion channel family protein TERM 1019 938276 - 938263 - G 72 -2.5 -5.4593 | opp_overlap 938268 938274, overlap 938268 GCAAAATAAGAAAAA TAATA TTTA TATTA ATAAAATTAATAATC TERM 1020 938383 - 938358 - G 73 -5.5 -4.6821 | AATTTCAACATAAAA GCTATAGCTAT AACA ATAACAATAGC AACAAGTATATTTAC TERM 1021 938529 - 938545 + g 76 -9.5 -3.17325 | overlap 938532 TCCAGCTTTTTATCC GAAGCTT TTA AAGCTTC TATATTCTCAACACT aroB 940116 - 939061 - | 3-dehydroquinate synthase Cj1009c 941562 - 940162 - | conserved hypothetical proetin Cj1009c TERM 1022 941525 - 941501 - G 91 -10.1 -4.08064 | opp_overlap 941505, overlap 941488 941505 AAGCCTTTTTCAAAA CAAAGCCTTTC TAA GAAATGCTTTG CTAAAATACCATCTA TERM 1023 941521 - 941505 - G 70 -5.1 -4.64861 | opp_overlap 941505, overlap 941488 941501 CTTTTTCAAAACAAA GCCTTTC TAA GAAATGC TTTGCTAAAATACCA tgt 941592 - 942713 + | queuine tRNA-ribosyltransferase Cj1011 942715 - 943482 + | putative CorA-like Mg2+ transporter protein TERM 1024 943502 - 943475 - T 100 -9.4 -5.08015 | opp_overlap 943480 943483, overlap 943480 AAGCTAAAAAACAAA CAAAATAAGCAA AATT TTGCTTATTTTA AGAATATTTATATAT TERM 1025 943480 - 943497 + T 73 -7.1 -4.15543 | opp_overlap 943475 943480, overlap 943483 AAAAAACAAACAAAA TAAGCAA AATT TTGCTTA TTTTAAGAATATTTA TERM 1026 943497 - 943480 - T 95 -7.1 -5.3472 | opp_overlap 943480 943483, overlap 943475 AAAAAACAAACAAAA TAAGCAA AATT TTGCTTA TTTTAAGAATATTTA Cj1012c 944063 - 943614 - | hypothetical protein TERM 1027 944050 - 944036 - G 72 -4.2 -5.16681 | CTAAAAACAATAAAA GCGCTA AAG CAGCAC AAAAAATAACCAAAA Cj1013c 947325 - 944080 - | putative cytochrome C biogenesis protein livF 948038 - 947343 - | branched-chain amino-acid ABC transport system ATP-binding protein livG 948795 - 948025 - | branched-chain amino-acid ABC transport system ATP-binding protein TERM 1028 948531 - 948506 - G 83 -9.9 -3.61015 | overlap 948504 AAACCAATAAGAACA TTTTCAAGCAC ATTC ATGCTTGAAAA AAGCCTAATATTTTG livM 949844 - 948792 - | branched-chain amino-acid ABC transport system permease protein TERM 1029 949807 - 949793 - G 88 -5.8 -5.56372 | AAATGAAAATAAAAA TAATTG AAG CAATTA AAAAGATTAAATGTG livH 950740 - 949844 - | branched-chain amino-acid ABC transport system permease protein livK 951868 - 950759 - | branched-chain amino-acid ABC transport system,periplasmic binding protein livJ 953005 - 951890 - | branched-chain amino-acid ABC transport system periplasmic binding protein Cj1020c 953470 - 953036 - | putative cytochrome C TERM 1030 953074 - 953092 + g 71 -6 -4.41494 | overlap 953076 TTGTTTTTTGCGCAG GTTCTTCT TCA AGAAGATC TTTTACTTGCAAATC TERM 1031 953076 - 953090 + g 71 -7.2 -3.8125 | overlap 953074 GTTTTTTGCGCAGGT TCTTCT TCA AGAAGA TCTTTTACTTGCAAA Cj1021c 953670 - 953479 - | putative periplasmic protein TERM 1032 953645 - 953633 - G 77 -4.9 -5.26119 | GCTGCAAAAACAAAA TGATT TAA AATCA TACCAATTAAAAATA Cj1022c 954229 - 953723 - | putative integral membrane protein asd 955269 - 954238 - | aspartate-semialdehyde dehydrogenase flgR 956570 - 955269 - | sigma-54 associated transcriptional activator Cj1025c 957076 - 956627 - | hypothetical protein Cj1026c 957567 - 957052 - | putative lipoprotein gyrA 960222 - 957631 - | DNA gyrase subunit A Cj1028c 960838 - 960263 - | putative purine/pyrimidine phosphoribosyltransferase TERM 1033 960822 - 960805 - G 76 -9.1 -3.14989 | opp_overlap 960804, overlap 960800 960803 ATTCACAAAAGCAGA GCAGAGC AAAA GCTCCGC AATTTATACACCTCA mapA 961479 - 960835 - | putative liproprotein TERM 1034 961524 - 961508 - R 73 -6.7 -4.18697 | AAAATTATTTTAAAA TTGTATT AAA AATACAA GCAAATTTCAAGCCA lepA 963352 - 961556 - | GTP-binding protein LepA TERM 1035 961642 - 961655 + g 74 -5.3 -4.98911 | TTTTACCTTCTTTTT GCTTT TCTA AAAGC TTTCTTTTTCTAGTA cmeD 963479 - 964753 + | outer membrane component of efflux system (multidrug efflux system CmeDEF) cmeE 964750 - 965490 + | membrane fusion component of efflux system (mutlidrug efflux system CmeDEF) cmeF 965493 - 968510 + | integral membrane component of efflux system (multidrug efflux system CmeDEF) TERM 1036 968528 - 968502 - T 100 -9 -5.05601 | opp_overlap 968502 TATGAGAGAGAAAAA TTAAATTAACCA AAA TGATTAATTTAA TTTTTTTAAGTATTA TERM 1037 968502 - 968528 + T 100 -6.8 -5.52909 | opp_overlap 968502 TATGAGAGAGAAAAA TTAAATTAACCA AAA TGATTAATTTAA TTTTTTTAAGTATTA Cj1034c 969340 - 968534 - | adenylosuccinate lyase TERM 1038 969231 - 969213 - G 95 -7.6 -5.40072 | opp_overlap 969198 969212 TTTTCTTCAAAAAAA GAAAAAAT TTT ATTTTTTC GTCCTATGACCTTTG Cj1035c 970060 - 969341 - | arginyl-tRNA-protein transferase Cj1036c 970311 - 970060 - | conserved hypothetical protein Cj1036c pycA 971760 - 970315 - | acetyl-CoA carboxylase Cj1038 971900 - 973063 + | putative cell division/peptidoglycan biosynthesis protein TERM 1039 973368 - 973380 + G 72 -7.7 -3.68071 | opp_overlap 973367, overlap 973367 973376 TGTAGGTGGATACAG TGCAG CTC CTGCA TCTTTTGCGGCTTTA murG 973060 - 974088 + | N-acetylglucosaminyl transferase Cj1040c 975222 - 974059 - | putative MFS (Major Facilitator Superfamily) transport protein Cj1041c 976081 - 975230 - | putative periplasmic ATP/GTP-binding protein Cj1042c 977034 - 976144 - | putative transcriptional regulatory protein Cj1043c 977636 - 977031 - | putative thiamine-phosphate pyrophosphorylase TERM 1040 977601 - 977620 + g 81 -3.6 -5.60993 | gap 1, overlap 977603 977605 TATTTCTACACATTT TCTATCGCT TAT GGCGAT-GA TTTTTTTATCCCACA thiH 978771 - 977626 - | thiamine biosynthesis protein ThiH TERM 1041 978593 - 978619 + g 72 -8.8 -3.01537 | overlap 978593 ATGAAATCTTCTGCT GCACTTGAAAGC AAG GCTTTTAAATGC TCTATGCTTAAATGT thiG 979550 - 978774 - | thiazole synthase moeB 980356 - 979553 - | thiamine biosynthesis protein ThiF thiS 980544 - 980353 - | putative thiamine biosynthesis protein dapE 981651 - 980554 - | succinyl-diaminopimelate desuccinylase Cj1049c 982254 - 981655 - | putative LysE family transporter protein npdA 982948 - 982247 - | NAD-dependent deacetylase cjeI 987010 - 982991 - | restriction modification enzyme mutS 989229 - 987019 - | recombination and DNA strand exchange inhibitor protein TERM 1042 988090 - 988076 - G 70 -5.8 -4.22524 | ATACCTAAAAGCAAA TTTTTC TTA GAAAAA AGCCTGGAAAAGTGC Cj1053c 989569 - 989219 - | putative integral membrane protein TERM 1043 989469 - 989484 + g 74 -3.3 -5.49729 | opp_overlap 989469 989470 ATCACAAGTAAAATA CCAAA AAAAGG TTTGG TTTTTTTGCCTAATT murC 990860 - 989562 - | UDP-N-acetylmuramate--L-alanine ligase TERM 1044 990608 - 990596 - G 71 -7.7 -3.53012 | opp_overlap 990596, overlap 990580 CCTCTTTGCGTGAAA GGCAT TTA ATGCC TAATTCTTTAGCGTA Cj1055c 992897 - 990924 - | putative sulfatase family protein Cj1056c 993685 - 992909 - | putative carbon-nitrogen hydrolase family protein Cj1057c 993851 - 993678 - | putative coiled-coil protein guaB 995305 - 993848 - | inositol-5-monophosphate dehydrogenase gatA 996676 - 995315 - | aspartyl/glutamyl-tRNA amidotransferase subunit A Cj1060c 996783 - 996673 - | hypothetical protein ileS 999530 - 996777 - | isoleucyl-tRNA synthetase TERM 1045 999386 - 999399 + g 83 -6.7 -5.10516 | AGGTAAAACTTTTTT TCGCA TTTT TGCGA TTTTCTTTCATTTTT TERM 1046 999842 - 999861 + G 81 -9.4 -3.69323 | TTGCATTATGCGACT GTTGCTAA AATT TTAGCAAC TTTAAATGATGATAA Cj1062 999629 - 1000717 + | putative CinA-like protein TERM 1047 1000781 - 1000766 - g 75 -4.8 -5.04987 | AAGACTTGGAAAAAA TTTATC CCTT GATAAA ACAATTAAGAAATAA TERM 1048 1000801 - 1000811 + G 70 -4 -5.00884 | opp_overlap 1000801 1000810 TTAAGAAATAACCTA TCTT TGA AAGA TTTTTTAGACAAAAT Cj1063 1000729 - 1001154 + | putative acetyltransferase TERM 1049 1002077 - 1002087 + G 75 -4 -5.23016 | TTAATTATAATCATT TCAA GAC TTGA TTTTTTGGATTATTT rdxA 1001837 - 1002442 + | nitroreductase TERM 1050 1002471 - 1002434 - f 100 -16.1 -4.15106 | opp_overlap 1002428 1002444 GATGAAGTTGTAAAA TTTATTTAAATTTTGCT TTTA AGCAAAATTTAAATAAA AATAAACTGATTCTT TERM 1051 1002607 - 1002620 + G 88 -3.1 -6.15536 | TTTTTAGAATGGTTT TAGCG CCTT TGCTA TTTTTTTTGTTAATT pgsA 1002567 - 1003103 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Cj1068 1003100 - 1004206 + | putative peptidase M50 family protein TERM 1052 1004616 - 1004626 + G 72 -4 -5.05577 | AAAAAATACACAATC TTAC AAT GTAA TTTTTGCTTTACTTT Cj1069 1004199 - 1005065 + | conserved hypothetical protein Cj1069 rpsF 1005152 - 1005529 + | 30S ribosomal protein S6 TERM 1053 1005859 - 1005839 - g 74 -8.3 -3.69618 | overlap 1005837 TTCAAGTTGAAAATA TGGAAATGC TTG GCAATTCCA ATGCTCCACAACAAG ssb 1005538 - 1006089 + | single-strand DNA-binding protein TERM 1054 1006267 - 1006253 - g 75 -4.3 -5.32944 | GGCACAAGCAAAAAA TACCA AGAAA TGGTA GAAGTTGCAATCAAA rpsR 1006100 - 1006360 + | 30S ribosomal protein S18 TERM 1055 1006371 - 1006391 + T 85 -8.4 -4.37211 | opp_overlap 1006371 TATAATCTTTTAAAA GCAAACTT GTAAA AAGTTTGC TTTCTTATACATTTA TERM 1056 1006391 - 1006371 - T 83 -8.4 -4.12198 | opp_overlap 1006371 TATAATCTTTTAAAA GCAAACTT GTAAA AAGTTTGC TTTCTTATACATTTA lon 1008796 - 1006421 - | ATP-dependent protease La TERM 1057 1007261 - 1007275 + g 75 -5.8 -4.74504 | opp_overlap 1007271 TGGAATTAAATATTT TTTCAT TAT ATGAAA TTTTTCACTTGGAGT TERM 1058 1007867 - 1007877 + g 70 -4 -5.00616 | overlap 1007871 TTTAATATCAAGTTT TTTC TTA GAAA TTTTTTCAAAAGGAA TERM 1059 1007959 - 1007974 + g 72 -2.6 -5.48163 | CTTGATGAATGCGTT CGAATT TTTC AATTTG TTTTTTGATTTCTTT Cj1074c 1009460 - 1008813 - | putative lipoprotein TERM 1060 1009003 - 1009017 + g 74 -8.6 -3.37198 | overlap 1009001 TTTGTAAGCATTGTT TGAACC AAA GGTTCA TATTCTGTATAAGGA TERM 1061 1009710 - 1009736 + G 73 -3.8 -5.18643 | opp_overlap 1009715, overlap 1009706 1009715 AGTATTTGTAAGACT TAAAAGTCTTGA TGG TAAAGACTTTTC TTTTGTTTTAATTAA TERM 1062 1009715 - 1009731 + G 76 -3.7 -5.40279 | opp_overlap 1009715, overlap 1009706 1009710 TTGTAAGACTTAAAA GTCTTGA TGG TAAAGAC TTTTCTTTTGTTTTA Cj1075 1009621 - 1010010 + | flagellar assembly protein FliW TERM 1063 1010138 - 1010109 - g 70 -3.6 -5.05079 | overlap 1010095 1010110 1010130 AGAAGTATAGAAAAA CTTCAAGCCCTC GCCAAA GAAGGCTTTAAA ACCTTACTTTACAAA proC 1010010 - 1010741 + | pyrroline-5-carboxylate reductase ctsT 1010738 - 1011040 + | putative periplasmic protein TERM 1064 1011227 - 1011208 - g 84 -6.6 -5.28983 | opp_overlap 1011208 1011206 1011212 CTTAAAATAGAAAAA TTAATACA AAAT TGTATTAA TATTACATTTTCACA TERM 1065 1011664 - 1011647 - g 75 -4.9 -5.10877 | ACAATAAATTAAAAA TTTGCCT AAAA AGACAAA CAAAACATTGCCTTG Cj1078 1011037 - 1011699 + | putative periplasmic protein Cj1079 1011696 - 1012148 + | putative periplasmic protein hemD 1012774 - 1012145 - | uroporphyrinogen-III synthase TERM 1066 1012730 - 1012708 - G 72 -2.8 -5.4588 | opp_overlap 1012711, overlap 1012711 TAAAATCATAAAAAA CAATCTCATT TAA AATAAGATTT TCCACCCCTTCAAAA TERM 1067 1012727 - 1012711 - G 71 -4.5 -4.75967 | opp_overlap 1012711, overlap 1012708 AATCATAAAAAACAA TCTCATT TAA AATAAGA TTTTCCACCCCTTCA thiE 1013384 - 1012752 - | thiamin-phosphate pyrophosphorylase thiD 1014186 - 1013374 - | phosphomethylpyrimidine kinase Cj1083c 1014869 - 1014183 - | putative nuclease Cj1084c 1015627 - 1014866 - | putative ATP/GTP-binding protein TERM 1068 1015491 - 1015507 + g 83 -2.3 -5.89947 | TGAATGAAATTTAAA GTATTTT CAT AAAGTGC TTTTTTTTGACTTTC mfd 1018565 - 1015629 - | transcription-repair coupling factor Cj1086c 1018960 - 1018565 - | conserved hypothetical protein Cj1086c Cj1087c 1019799 - 1018897 - | putative peptidase TERM 1069 1019511 - 1019495 - GR 72 -7.3 -3.66178 | opp_overlap 1019493 1019495, overlap 1019507 GCTTCTAAGCCCAAA GCCTCTT CAA AAGAAGC TATTTTATCTTCTAT folC 1020970 - 1019786 - | folylpolyglutamate synthase/dihydrofolate synthase TERM 1070 1020036 - 1020048 + gr 76 -3.5 -5.37345 | TCCAAATAAGCATTA TAAAT AAG ATTTA TTTTTTCTCCTTGAA TERM 1071 1020328 - 1020348 + gr 100 -5.5 -5.86965 | opp_overlap 1020327 1020330 1020345, overlap 1020330 1020345 AGGAAACTTGCAAAT TAGCTTTTT TTA AAAAAGCAA TTTTTTTTGCTAAAT TERM 1072 1020837 - 1020857 + gr 70 -6.3 -4.11027 | opp_overlap 1020837 1020841, overlap 1020817 1020815 1020833 ATAAGTTGGATTATA GGAATATTT TTA AAATATTTC TTATATTTTTCATAC Cj1089c 1022333 - 1020936 - | hypothetical protein TERM 1073 1021508 - 1021524 + gr 74 -2.3 -5.64006 | CATCTGGTTTTAAGG TATTGAT AAA ATCCATA TTTTTTTCATTCGAT Cj1090c 1022829 - 1022317 - | putative lipoprotein leuS 1025255 - 1022826 - | leucyl-tRNA synthetase TERM 1074 1024511 - 1024528 + g 77 -4.9 -5.33921 | TTGTAGTAAAAACTT CTAAAGA ACTT TCTTTGG TTTTTTGCTTACTTT secF 1026236 - 1025265 - | preprotein translocase subunit SecF secD 1027816 - 1026236 - | preprotein translocase subunit SecD yajC 1028081 - 1027809 - | preprotein translocase subunit YajC TERM 1075 1028243 - 1028265 + Gr 72 -7.9 -3.31515 | GCTATTTGGGGGTTA GTTTTACTT CTAAA AAGTAAAAC TTCTAAACAATATTT TERM 1076 1028372 - 1028385 + Gr 77 -5.3 -5.01553 | opp_overlap 1028372 TTAGTACCAATTATA CCAAT TATC ATTGG TTTTATTTATGGGTT TERM 1077 1029056 - 1029041 - gR 83 -3.4 -5.8187 | GACTTAACAAAAAAA TATTTT CTCA AAAATA TTGAAGAATTTTCCA Cj1095 1028054 - 1029379 + | apolipoprotein N-acyltransferase TERM 1078 1029574 - 1029602 + Tr 70 -7.6 -3.6014 | opp_overlap 1029574, overlap 1029572 ATTAATTCTTTATAA TTATACAAGCCT TGTTT AAGCTTGTATAA TATTGTTAATTTTTT TERM 1079 1029602 - 1029574 - TR 80 -9.8 -3.31501 | opp_overlap 1029574 1029572 ATTAATTCTTTATAA TTATACAAGCCT TGTTT AAGCTTGTATAA TATTGTTAATTTTTT metK 1030812 - 1029616 - | S-adenosylmethionine synthetase Cj1097 1030953 - 1032176 + | serine/threonine transporter SstT pyrB 1032186 - 1033073 + | aspartate carbamoyltransferase catalytic subunit Cj1099 1033077 - 1034798 + | peptidase Cj1100 1034792 - 1035229 + | hypothteical protein Cj1100 TERM 1080 1035630 - 1035610 - g 77 -5.5 -4.98911 | CATGATAAAAACAAA GATAATGTC TAT GATATTATC CAATACATATCTTAT TERM 1081 1036035 - 1036013 - g 72 -5 -4.72272 | opp_overlap 1036013 1036029, overlap 1036022 1036029 GGCGTGGAGCAAAAA TTGAAAATAT TTT AAATTTTCAA AATGATTTTAAAAAT Cj1101 1035226 - 1037301 + | ATP-dependent DNA helicase truB 1037298 - 1038116 + | tRNA pseudouridine synthase B TERM 1082 1038260 - 1038248 - g 72 -6.3 -4.33785 | ATACTTAGAAAAGAA CTTGT TCA ACAAG TAAAGGATGAAAATT csrA 1038110 - 1038337 + | carbon storage regulator homolog Cj1104 1038334 - 1039101 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 1083 1039457 - 1039433 - g 72 -2.9 -5.47159 | TTTTAACACAAAAAA TAAAGTAAAAG CTA CCCTTGCTTTA GCTAAAGGGAAAAAT smpB 1039098 - 1039550 + | SsrA-binding protein Cj1106 1039561 - 1040163 + | putative periplasmic thioredoxin TERM 1084 1040293 - 1040269 - g 83 -8.8 -4.03413 | ATTTTGTCATAGAAA TTTTGATGAA TATTT TTCATCAAAA CCTTGAGAAAGCAAG clpS 1040163 - 1040453 + | ATP-dependent Clp protease adaptor protein TERM 1085 1040744 - 1040734 - gf 76 -2.6 -5.63236 | overlap 1040688 ATCTAAAAATAAAAA TAAT GAA ATTA AAATTATAGATTTTT TERM 1086 1041506 - 1041454 - gf 90 -6.8 -5.243 | gap 2, opp_overlap 1041459 1041464, overlap 1041458 1041460 TAAAGGATTAAAAAA CAAATATGAAGAATTTCATCATATCA AAT TAA-ACGATGAAATTCTTCA-ATATG CTGTAATTTGGGGTA TERM 1087 1041504 - 1041458 - gf 86 -7.1 -5.0917 | opp_overlap 1041459 1041464, overlap 1041454 1041460 GGATTAAAAAACAAA TAT-GAAGAATTTCATCATATCA AAT TAA-ACGATGAAATTCTTCAATA TGCTGTAATTTGGGG TERM 1088 1041501 - 1041460 - gf 100 -11.3 -4.15047 | gap 1, opp_overlap 1041459 1041464, overlap 1041458 1041454 ATTAAAAAACAAATA TGAAGAATTTCATCATATCA AAT TAA-ACGATGAAATTCTTCA ATATGCTGTAATTTG clpA 1040450 - 1042579 + | ATP-dependent Clp protease ATP-binding subunit aat 1042554 - 1043201 + | leucyl/phenylalanyl-tRNA--protein transferase TERM 1089 1043225 - 1043205 - T 100 -12.7 -4.7078 | opp_overlap 1043208, overlap 1043197 TTAATTACTTAAAAA TAAGCGTGA AAA TCACGCTTA TGACATCGCTTTAGC TERM 1090 1043208 - 1043222 + T 82 -10 -3.34236 | opp_overlap 1043205 ATTACTTAAAAATAA GCGTGA AAA TCACGC TTATGACATCGCTTT Cj1110c 1044512 - 1043223 - | putative MCP-type signal transduction protein TERM 1091 1043803 - 1043825 + g 80 -2 -5.74288 | opp_overlap 1043809, overlap 1043804 TCATTTTTAACCGGA TTATAACTTG CTT CAAGGTATAC TTTTTTATTATTTCT Cj1111c 1045219 - 1044593 - | putative MarC family integral membrane protein Cj1112c 1045593 - 1045234 - | methionine sulfoxide reductase B TERM 1092 1046193 - 1046210 + G 71 -5.5 -4.44667 | opp_overlap 1046193, overlap 1046189 GGTTTAGAAGCTAAA GGGCTTG ATGC CAACCCC TTTGTTGTTCAAAAA TERM 1093 1046241 - 1046269 + G 76 -9.1 -3.11559 | opp_overlap 1046234 1046233 1046243, overlap 1046243 CTTCAAAGTTCCAAT CATTCCATTAAAA ATC TTTTAATGGAATA TCTTGAAATTATACT TERM 1094 1046267 - 1046243 - g 89 -11.7 -2.74514 | opp_overlap 1046243 1046241, overlap 1046234 1046233 TCAAAGTTCCAATCA TTCCATTAAAA ATC TTTTAATGGAA TATCTTGAAATTATA TERM 1095 1046243 - 1046267 + G 93 -11.7 -3.11326 | opp_overlap 1046234 1046233 1046243, overlap 1046241 TCAAAGTTCCAATCA TTCCATTAAAA ATC TTTTAATGGAA TATCTTGAAATTATA TERM 1096 1046418 - 1046406 - g 76 -2.7 -5.52384 | CTTGCAGGAAAAAAA CTTAA CAT TCAAG CAAGAATCAAAGCTG Cj1113 1045683 - 1046480 + | conserved hypothetical protein Cj1113 pssA 1047199 - 1046471 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 1097 1047025 - 1046991 - G 100 -12.4 -3.98075 | opp_overlap 1046996, overlap 1046992 1046996 AGATCAGCTAAAGAA TCAAATTCTACTCCAA ATT TTGAAGTAGAATTTGT AAGTCTTGCAACGCG TERM 1098 1047024 - 1046992 - G 100 -15.9 -2.98122 | opp_overlap 1046996, overlap 1046991 1046996 GATCAGCTAAAGAAT CAAATTCTACTCCAA ATT TTGAAGTAGAATTTG TAAGTCTTGCAACGC TERM 1099 1046996 - 1047020 + g 82 -8.7 -3.9777 | opp_overlap 1046992 1046991 1046996 AGCTAAAGAATCAAA TTCTACTCCAA ATT TTGAAGTAGAA TTTGTAAGTCTTGCA TERM 1100 1047020 - 1046996 - G 100 -10.9 -4.15366 | opp_overlap 1046996, overlap 1046992 1046991 AGCTAAAGAATCAAA TTCTACTCCAA ATT TTGAAGTAGAA TTTGTAAGTCTTGCA TERM 1101 1047151 - 1047141 - G 83 -6.8 -5.06103 | ATAACCCCTAAAAAA GCTG AAG CAGC TGTAAAAAGATTGGG Cj1115c 1047826 - 1047209 - | putative phosphatidylserine decarboxylase-related protein ftsH 1049760 - 1047823 - | membrane bound zinc metallopeptidase TERM 1102 1048105 - 1048115 + g 70 -4 -4.85782 | opp_overlap 1048105 TTGCCCACCACTTAA GAAA GTA TTTC TTTGTTTTTCAAGCA prmA 1050609 - 1049764 - | ribosomal protein L11 methyltransferase cheY 1051024 - 1050632 - | chemotaxis regulatory protein pglG 1052030 - 1051137 - | putative integral membrane protein pglF 1053802 - 1052030 - | UDP-GlcNAc C4,6 dehydratase TERM 1103 1052245 - 1052286 + g 72 -2.6 -5.47821 | gap 1 CTTTTCTTAAGCCTG TGATTTTAATTTCTAAATC ATTGC GATT-AGAAAGTAAAAGCA TTTTTTTAGCTAAAT TERM 1104 1052433 - 1052409 - G 73 -5.8 -4.58466 | GCCACAAGCATAAAA TAACGCAC TATATCAGG GTGCGTTA AAGTTAAAGGCTCAT TERM 1105 1052688 - 1052674 - G 71 -5.8 -4.3739 | opp_overlap 1052674 1052672 1052669 CACTGTCGCATAAAA TTTTAG TTC CTAAAA TATTATTGATTACTG TERM 1106 1053013 - 1053003 - G 75 -4.6 -5.02074 | TTATCTTTTAAAAAA GCCG CCA CAGC ACTATCATCTAAATC TERM 1107 1053555 - 1053539 - G 76 -2.9 -5.64328 | AAGAAAAAAACAAAA CTCAGCT AAA AGCAAAG CGATAAAAATCTTTC pglE 1054964 - 1053804 - | UDP-4-keto-6-deoxy-GlcNAc C4 aminotransferase Cj1122c 1055713 - 1055060 - | putative integral membrane protein. Functional classification-Surface polysaccharides,lipopolysaccharides and antigens pglD 1056257 - 1055670 - | acetyltransferase pglC 1056846 - 1056244 - | galactosyltransferase TERM 1108 1056367 - 1056356 - G 71 -3 -5.33921 | AAATCAAGCAAAAAA GAAA TATT TTTC ACATAATACACATCA pglA 1057969 - 1056839 - | GalNAc transferase TERM 1109 1057399 - 1057429 + g 82 -4.2 -5.54192 | TCCAAAAAAGCTCTT TTTTTTCCGATT CTACATA AATAGGAAAAAA TTTTTTTAAATTGAT pglB 1060120 - 1057979 - | oligosaccharide transferase to N-glycosylate proteins pglJ 1061221 - 1060124 - | GalNAc transferase pglI 1062138 - 1061209 - | glucosyl transferase TERM 1110 1061289 - 1061306 + g 70 -4.1 -4.98255 | opp_overlap 1061289 TTAAAATGAGTAATA TCAAAGC AGGA GCGTTGA TTTTTATACTTAGGC TERM 1111 1061336 - 1061353 + g 72 -4.3 -5.08011 | opp_overlap 1061336 1061329 CTTTTAAACAAACAT TTATAAA GGGC TTTATAA TTTTTTGCAAGTTTT pglH 1063210 - 1062131 - | GalNAc transferase/polymerase TERM 1112 1062431 - 1062445 + g 72 -5 -4.72272 | opp_overlap 1062431 1062432 TACAAAAGAACAAAG GCAAAG CAC TTTTGC TTTTTCATAAAGAGC TERM 1113 1062813 - 1062801 - G 70 -4.1 -4.95806 | AAAGCATCACAAAAA GGATA GCT TACCC TTCTTAAAAAACGCC pglK 1064901 - 1063207 - | flippase TERM 1114 1064465 - 1064455 - G 72 -4 -5.1166 | CATCAAAAGTAAAAA TGAT GAA ATCA TAGTGCTTAGATTAT TERM 1115 1064777 - 1064762 - G 74 -3.3 -5.4593 | TCAAAATAAGAAAAA TCACT AGCCAA AGTGA TAAAAGGCATTACCA TERM 1116 1064876 - 1064838 - G 100 -9.2 -5.18561 | opp_overlap 1064851, overlap 1064851 TAAATACTGAAAAAA CAAGCAAGAAAAATAAAA AAT TTTTATCTTCCTTACTTA AAATAAAAAAAAGTT TERM 1117 1064863 - 1064851 - G 73 -3.5 -5.23396 | opp_overlap 1064851, overlap 1064838 AACAAGCAAGAAAAA TAAAA AAT TTTTA TCTTCCTTACTTAAA gne 1065881 - 1064895 - | UDP-GlcNAc/Glc 4-epimerase Cj1132c 1066733 - 1065939 - | conserved hypothetical protein Cj1132c waaC 1066799 - 1067827 + | heptosyltransferase I htrB 1067817 - 1068704 + | lipid A biosynthesis lauroyl acyltransferase TERM 1118 1069198 - 1069188 - g 72 -2.6 -5.47399 | GTAATGCTAAAAAAA TTTA TCT TAAA AATGGATTAAGGCAT Cj1135 1068701 - 1070248 + | putative two-domain glucosyltransferase TERM 1119 1070318 - 1070297 - g 72 -4.6 -4.93318 | opp_overlap 1070299 TACAATGTAGAAAAA TATCTAAA AGAATG TTTAGATA GTGTAATCAATCAAA TERM 1120 1071250 - 1071270 + G 77 -8.4 -3.84246 | opp_overlap 1071234, overlap 1071230 AAAAGAGGCTTTTTT GCCTTTTT ATGTA AAAAAGGC TTTGATGATTAAAAA Cj1136 1070252 - 1071424 + | putative glycosyltransferase Cj1137c 1072403 - 1071408 - | putative glycosyltransferase TERM 1121 1072421 - 1072441 + H 71 -8.5 -2.76721 | opp_overlap 1072421 1072420 ATATTCCTAAAAAGT TTTTTGATA TAA TATCAAAAA TAATTAAGGTTATGT TERM 1122 1072441 - 1072421 - H 70 -8.5 -2.61272 | opp_overlap 1072421, overlap 1072420 ATATTCCTAAAAAGT TTTTTGATA TAA TATCAAAAA TAATTAAGGTTATGT TERM 1123 1072527 - 1072506 - g 72 -4.6 -4.93318 | opp_overlap 1072508 TACAATGTAGAAAAA TATCTAAA AGAATG TTTAGATA GTGTAATCAATCAAA Cj1138 1072461 - 1073630 + | putative glycosyltransferase wlaN 1074530 - 1073619 - | beta-1,3 galactosyltransferase TERM 1124 1073697 - 1073678 - G 70 -5.2 -4.52857 | opp_overlap 1073673 1073692, overlap 1073692 ATTTTTGATATAAAA TATTTATT TTAT AATAAATA AGATTTATATTTCTT TERM 1125 1073734 - 1073746 + g 71 -4.9 -4.76041 | AAATTTTGTTCATAT TTCAA TAA TTGAA TTTTTAATAAATATA TERM 1126 1074056 - 1074066 + g 76 -5.4 -5.10154 | TTTTAGCCCACATTG TCCA AAA TGGA TTTTTAGTTTTAAGT TERM 1127 1074282 - 1074306 + g 78 -10.1 -3.18768 | opp_overlap 1074281 1074280, overlap 1074280 1074286 AAACATGATATAAGG TGAAGTTGCTA CTT TAGCACCTTCA TATCTTGCTCTTAAA TERM 1128 1075118 - 1075106 - g 90 -3.5 -6.22691 | overlap 1075094 TAATAATAAAAAAAA TTTAT TAA ATAAA TGCACTGGTTTTAAA cstIII 1074585 - 1075469 + | alpha-2,3 sialyltransferase TERM 1129 1076274 - 1076262 - g 72 -2.7 -5.34365 | CGATAATAATAAAAA TCCTT TAA AAGAA GAGCAAGTGACCATT neuB1 1075450 - 1076481 + | sialic acid synthase (N-acetylneuraminic acid synthetase) neuC1 1076478 - 1077593 + | putative UDP-N-acetylglucosamine 2-epimerase TERM 1130 1077970 - 1077958 - g 70 -5.5 -4.35524 | GGTGCAAATTGAAAA TCCGC AAA GCGAA GAAAATAAACTTCAT TERM 1131 1077980 - 1078004 + G 70 -8.7 -2.50077 | opp_overlap 1077980, overlap 1077979 1077977 AGCGAAGAAAATAAA CTTCATAGTTA TTA TAACTATGTAG CTAGTTTTATACCGC TERM 1132 1078004 - 1077980 - g 93 -8.7 -4.88795 | opp_overlap 1077979 1077977 1077980 AGCGAAGAAAATAAA CTTCATAGTTA TTA TAACTATGTAG CTAGTTTTATACCGC neuA1, 1077590 - 1079200 + | - two-domain bifunctional protein (beta-1,4-N-acetylgalactosaminyltransferase/CMP-Neu5Ac synthase) TERM 1133 1079184 - 1079200 + T 70 -2.3 -5.60993 | opp_overlap 1079185 1079190, overlap 1079185 TAAAAAGAGTTAATA ATATAAG CTT CTTATAA TTTTTTTATAAAAAA Cj1145c 1080041 - 1079195 - | hypothetical protein TERM 1134 1079972 - 1079947 - G 74 -9.3 -2.88398 | overlap 1079944 1079961 ATAAATTTATAACCA TTATCTATAAA AGAT TTTATAGATAA AAGCTCCATTAAACC waaV 1080849 - 1080025 - | putative glucosyltransferase waaF 1080908 - 1081867 + | heptosyltransferase II gmhA 1082408 - 1081848 - | sedoheptulose 7-phosphate isomerase hldE 1083790 - 1082405 - | D-beta-D-heptose 7-phosphate kinase/D-beta-D-heptose 1-phosphate adenylyltransferase hldD 1084736 - 1083783 - | ADP-glyceromanno-heptose 6-epimerase TERM 1135 1084161 - 1084182 + g 72 -4.5 -4.87786 | TTGATGGCCAAATTG CAAAACC ATAGAAGC GGTTTTG TTTTTATAAAATTCG gmhB 1085297 - 1084737 - | D,D-heptose 1,7-bisphosphate phosphatase Cj1153 1085379 - 1085681 + | putative periplasmic cytochrome C TERM 1136 1085714 - 1085693 - T 86 -6.7 -5.06103 | gap 1, opp_overlap 1085693, overlap 1085682 ATAATTTCTAAAAAA GGCTTTTCTT TTT AAGAAA-GCC TTTTTTTATCCAAAG TERM 1137 1085693 - 1085714 + T 100 -6.7 -5.60993 | gap 1, opp_overlap 1085682 1085693 ATAATTTCTAAAAAA GGCTTTTCTT TTT AAGAAA-GCC TTTTTTTATCCAAAG Cj1154c 1085910 - 1085704 - | putative cytochrome oxidase maturation protein cbb3-type Cj1155c 1088264 - 1085907 - | putative cation-transporting ATPase TERM 1138 1086051 - 1086040 - G 82 -4.4 -5.59962 | opp_overlap 1086040, overlap 1086041 TAAAACAAAGAAAAA GCAA GATT TTGC TTGATAATTTTAAAG TERM 1139 1089546 - 1089516 - g 88 -7.6 -4.92757 | TCAGGAACAAGAAAA GAAGAATTGCTCCA AGG CGTAGCAAATCTTC AAAAAATTTGGGCAA rho 1088373 - 1089671 + | transcription termination factor Rho TERM 1140 1091143 - 1091125 - g 77 -9.6 -2.95472 | overlap 1091124 ATATGCTTAAAGAAG GGGCCAAA AAA TTTGACCC ACAAGAAGATCTTAA dnaX 1089675 - 1091204 + | DNA polymerase III subunits gamma and tau Cj1158c 1091428 - 1091201 - | small hydrophobic protein Cj1159c 1091529 - 1091407 - | small hydrophobic protein Cj1160c 1091723 - 1091544 - | hypothetical protein Cj1161c 1093894 - 1091795 - | putative cation-transporting ATPase Cj1162c 1094088 - 1093894 - | putative heavy-metal-associated domain protein Cj1163c 1095028 - 1094078 - | putative cation transport protein TERM 1141 1095029 - 1095082 + r 82 -8.5 -3.97569 | opp_overlap 1095028, overlap 1095026 1095030 TAAAAATTTATACAT CTTATATCCTTTTTTGCTTGACATT TTAA GATATTAAGCTAAAAAGGATATAAA TATTTGTTATTTTTA TERM 1142 1095030 - 1095081 + r 91 -12 -2.96101 | opp_overlap 1095028, overlap 1095029 1095026 AAAAATTTATACATC TTATATCCTTTTTTGCTTGACATT TTAA GATATTAAGCTAAAAAGGATATAA ATATTTGTTATTTTT Cj1164c 1095367 - 1095104 - | hypothetical protein Cj1165c 1095931 - 1095437 - | putative integral membrane protein Cj1166c 1096704 - 1095928 - | putative integral membrane protein TERM 1143 1096085 - 1096075 - G 79 -5.4 -5.3236 | AGAATTTATAAAAAA TACC CCT GGTA TAAGATACAAGATAC ldh 1096771 - 1097697 + | L-lactate dehydrogenase TERM 1144 1097698 - 1097712 + T 100 -8.6 -5.1166 | opp_overlap 1097698 1097694 AAAGATAAAATTTAA GCCTTT TTA AAAGGC TTTTTGATTTTAATA TERM 1145 1097712 - 1097698 - T 75 -8.6 -3.46285 | opp_overlap 1097698, overlap 1097694 AAAGATAAAATTTAA GCCTTT TTA AAAGGC TTTTTGATTTTAATA Cj1168c 1098296 - 1097694 - | putative integral membrane protein (dedA homolog) TERM 1146 1098290 - 1098280 - G 70 -4 -4.89477 | opp_overlap 1098280 GTCTCAACAATAAAA GAAA TGA TTTC TTGCATATTAGCCTT TERM 1147 1098371 - 1098357 - R 86 -7.1 -4.946 | opp_overlap 1098357, overlap 1098351 ATTAAACAGTAAAAA GCGGT TTTAC ACCGC TTTTTTTATTTACCT TERM 1148 1098357 - 1098371 + r 100 -7.1 -5.96894 | opp_overlap 1098357 1098351 ATTAAACAGTAAAAA GCGGT TTTAC ACCGC TTTTTTTATTTACCT Cj1169c 1098604 - 1098377 - | putative periplasmic protein omp50 1100036 - 1098615 - | 50 kda outer membrane protein precursor TERM 1149 1099612 - 1099600 - G 71 -7.7 -3.4285 | GCATCTAAGTCATAA GGAGT ACC ACTCC AACCCATTTGAGACC TERM 1150 1099919 - 1099940 + g 81 -7.3 -4.62872 | overlap 1099917 1099907 TGATTTGTGCAAGTT CAGCTTGAA TTTG TGCAAGCTG TTTTTGAAGCTTAGT TERM 1151 1100035 - 1100019 - G 70 -8.1 -3.13007 | overlap 1100006 1100005 1100018 AGCACTTAAAATAAG TGAAAAC CTA GTTTTCA TAATCATAACTCCTT TERM 1152 1100133 - 1100154 + r 83 -8.8 -3.98842 | CATTAATCATTTTTA GCTAGTCA AACTTA TGACTAGC TTTGTAAATATTGTA ppi 1100674 - 1100192 - | peptidyl-prolyl cis-trans isomerase Cj1172c 1101391 - 1100684 - | hypothetical protein TERM 1153 1101458 - 1101481 + H 73 -6.9 -4.07568 | opp_overlap 1101462, overlap 1101462 GGCTAATTAAAGCTT TAAATGGTA TGATTT TACCATTTA TTTTCGGGGAGAAGC Cj1173 1101500 - 1101841 + | putative efflux protein (multidrug resistance protein) Cj1174 1101841 - 1102149 + | putative efflux protein (multidrug resistance protein) TERM 1154 1102139 - 1102177 + T 76 -4 -5.47846 | opp_overlap 1102143 1102146 1102152, overlap 1102144 1102146 1102152 TAGCAGTATTTTTAC TAAACTATTAAAACAGCA AAA TGCTGTTTTAATGTTCCA TTTTGTTTTTTGCTT TERM 1155 1102172 - 1102143 - T 85 -10.3 -3.73953 | gap 1, opp_overlap 1102139 1102144 1102146 1102152, overlap 1102146 1102152 AGTATTTTTACTAAA CTATTAAAACAGCA AAA TGCTGTTTTAAT-G TTCCATTTTGTTTTT TERM 1156 1102144 - 1102172 + T 100 -12.7 -3.5268 | opp_overlap 1102143 1102146 1102152, overlap 1102139 1102146 1102152 GTATTTTTACTAAAC TATTAAAACAGCA AAA TGCTGTTTTAATG TTCCATTTTGTTTTT TERM 1157 1102170 - 1102146 - T 100 -13.1 -2.96873 | opp_overlap 1102146 1102144 1102139 1102152, overlap 1102143 1102152 ATTTTTACTAAACTA TTAAAACAGCA AAA TGCTGTTTTAA TGTTCCATTTTGTTT TERM 1158 1102146 - 1102170 + T 100 -13.1 -3.29811 | opp_overlap 1102143 1102146 1102152, overlap 1102144 1102139 1102152 ATTTTTACTAAACTA TTAAAACAGCA AAA TGCTGTTTTAA TGTTCCATTTTGTTT TERM 1159 1102152 - 1102164 + T 78 -7.7 -4.44284 | opp_overlap 1102146 1102143 1102152, overlap 1102146 1102144 1102139 ACTAAACTATTAAAA CAGCA AAA TGCTG TTTTAATGTTCCATT TERM 1160 1102164 - 1102152 - T 78 -7.7 -4.39989 | opp_overlap 1102152 1102146 1102144 1102139, overlap 1102146 1102143 ACTAAACTATTAAAA CAGCA AAA TGCTG TTTTAATGTTCCATT argS 1103759 - 1102167 - | arginyl-tRNA synthetase TERM 1161 1102265 - 1102240 - G 74 -7.1 -4.00469 | opp_overlap 1102240, overlap 1102253 CTAAGAGCAACCAAA GAAAATAATTT AAGC AAATCATTTTC ATTTGCAGAGCCTAC TERM 1162 1102579 - 1102589 + g 83 -6.8 -5.14563 | opp_overlap 1102579 ATATCAAATTCCAAA TGCG TAT CGCA TTTTTTGCTCAAAAA tatA 1104010 - 1103771 - | Sec-independent protein translocase (TatA/E homolog) gmk 1104635 - 1104012 - | guanylate kinase Cj1178c 1106260 - 1104632 - | highly acidic protein TERM 1163 1104679 - 1104699 + g 75 -9.1 -2.98479 | overlap 1104673 TATTCATATTCATAC CCTTAAGAG CAG CTTTTAAGG TATCATCTTTAATAC fliR 1107084 - 1106317 - | flagellar biosynthesis protein FliR Cj1180c 1107706 - 1107071 - | putative ABC transporter ATP-binding protein TERM 1164 1107289 - 1107273 - G 73 -8.7 -3.05997 | opp_overlap 1107273 1107271 TTTTTACAAAGCACA CGTGCGA TAC TCACACG CTGTTGTTGTCCGCC TERM 1165 1107691 - 1107658 - G 70 -5.3 -4.64657 | TTAAACCCTCAAAAA GCGGATAATCAAAAC TATG GCTTAAATTTTCCGC TCTTAAGAGTTCCAT tsf 1108792 - 1107719 - | elongation factor Ts TERM 1166 1107988 - 1108000 + g 79 -7.7 -4.30001 | overlap 1107985 TTTCAGGTTTACCTT GAGCT TTA AGCTC TTCTTTGATTTTTTC rpsB 1109583 - 1108792 - | 30S ribosomal protein S2 cfa 1110862 - 1109699 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 1167 1110729 - 1110751 + g 81 -9.4 -3.60475 | opp_overlap 1110728 1110727 TCCAAAAAAGGAATT TTTTCTTTAA AAA TTAAAGAAAA TTTAGCAGGTTTGTT TERM 1168 1110986 - 1110945 - R 76 -3.9 -5.61689 | opp_overlap 1110949, overlap 1110938 1110948 1110950 AAAATGAAGAAAAAA TAAGATTTTTGCCATTATC ATTA AATAATGGCAAAAAATGTA ATATTAATGTAATTT TERM 1169 1110983 - 1110948 - R 74 -5.6 -4.82661 | opp_overlap 1110949, overlap 1110938 1110945 1110950 ATGAAGAAAAAATAA GATTTTTGCCATTATC ATTA AATAATGGCAAAAAAT GTAATATTAATGTAA TERM 1170 1110949 - 1110982 + r 71 -8.4 -2.94062 | opp_overlap 1110938 1110948 1110945 1110950 TGAAGAAAAAATAAG ATTTTTGCCATTAT CATTAA ATAATGGCAAAAAA TGTAATATTAATGTA TERM 1171 1110981 - 1110950 - R 100 -12.6 -4.00001 | opp_overlap 1110949, overlap 1110938 1110948 1110945 GAAGAAAAAATAAGA TTTTTGCCATTATC ATTA AATAATGGCAAAAA ATGTAATATTAATGT petC 1112114 - 1110990 - | putative ubiquinol-cytochrome C reductase cytochrome C subunit petB 1113361 - 1112111 - | putative ubiquinol-cytochrome C reductase cytochrome B subunit petA 1113866 - 1113363 - | putative ubiquinol-cytochrome C reductase iron-sulfur subunit TERM 1172 1113751 - 1113769 + g 78 -3.1 -5.52384 | CCTGCAGCTTTGACA CTTGGAA GCGGA TCCCAAG TTTTTTTCATCGCAA arsB 1115242 - 1113956 - | arsenical pump membrane protein TERM 1173 1114569 - 1114553 - G 74 -2.3 -5.65927 | opp_overlap 1114556, overlap 1114556 TATGCAAAGAAAAAA CAATTTC AAT GAAATTT GCTCTTTTTTGATTA TERM 1174 1114566 - 1114556 - G 70 -4 -4.88687 | opp_overlap 1114556, overlap 1114553 GCAAAGAAAAAACAA TTTC AAT GAAA TTTGCTCTTTTTTGA TERM 1175 1114690 - 1114665 - G 86 -2.7 -6.11229 | opp_overlap 1114680, overlap 1114657 1114680 AGCAAAACAAAAAAA TTTGGCAAAAA CATA TTTTTAGCAAA TTCTAAAAATTCTAT gidA 1117102 - 1115243 - | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 1176 1117183 - 1117150 - R 77 -9.1 -3.38034 | opp_overlap 1117148, overlap 1117148 1117151 AAAGATTATATAATA TTTAGACTTAAAACA AACT CGTTTTAAGTCTAAC AAAAATTTATTTAGC TERM 1177 1117182 - 1117151 - R 95 -12.6 -2.61736 | opp_overlap 1117148, overlap 1117150 1117148 AAGATTATATAATAT TTAGACTTAAAACA AACT CGTTTTAAGTCTAA CAAAAATTTATTTAG cetB 1117687 - 1117190 - | bipartate energy taxis response protein cetB TERM 1178 1117234 - 1117253 + g 70 -5 -4.61231 | overlap 1117236 GCTCATTATAAGTTT TATCTGCA TCTT TGCAGAAA TTTTTAAGCATCTCA cetA 1119084 - 1117705 - | bipartate energy taxis response protein cetA TERM 1179 1118356 - 1118380 + g 76 -6.6 -4.4715 | ATCGGCTATATCGCG TATTACTTCA ACCAC TGAAGTGATA TTTTGTGAATTAGCC TERM 1180 1118515 - 1118527 + g 71 -4.9 -4.78107 | AGAAATGGCATCCAC TGTAT CAT ATACA TTTTTCATCATGCTA Cj1191c 1119699 - 1119205 - | putative PAS domain containing signal-transduction sensor protein TERM 1181 1119263 - 1119231 - G 71 -4.5 -4.74103 | gap 1 CTTGTAAGTTAAAAA TAAGTTCATTATAA GTCATT TTATAA-GAACTTA CAATATCCATTAAAG dctA 1119968 - 1121344 + | putative C4-dicarboxylate transport protein Cj1193c 1122147 - 1121341 - | putative periplasmic protein TERM 1182 1122035 - 1122070 + g 72 -4.2 -5.14563 | overlap 1122038 GCTTCTTTGGTATTT TTATAATCAAAGTGCT CCCA AGAATTTTGATTATTA TTTTTTGCTAAAGCC TERM 1183 1122038 - 1122067 + g 73 -5.9 -4.67552 | overlap 1122035 TCTTTGGTATTTTTA TAATCAAAGTGCT CCCA AGAATTTTGATTA TTATTTTTTGCTAAA TERM 1184 1123751 - 1123765 + G 74 -8.6 -3.29461 | CTTGGATTATCACTT TACCAG CCG CTGGTA TTATGGCAGCACTTG Cj1194 1122289 - 1123815 + | possible phosphate permease TERM 1185 1123824 - 1123838 + T 78 -4.4 -5.41359 | overlap 1123813 AATTTAAGTAAAGCT TATTTT TCT AAAATA TTTTTTCCTTTAATT pyrC2 1125001 - 1123823 - | dihydroorotase TERM 1186 1123903 - 1123917 + g 71 -5.8 -4.37199 | opp_overlap 1123899 1123897, overlap 1123899 1123907 CAGAATAAAGAGAAC TTTTTG GAG CAAAAA TTTCTTCATTCTCAT gpsA 1125907 - 1125011 - | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase gatB 1127322 - 1125904 - | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 1187 1127258 - 1127270 + g 77 -4.9 -5.20783 | opp_overlap 1127247 GAAGTTGCACATGAG CAAAA GAT TTTTG TTTTTGTATTTAACT TERM 1188 1127527 - 1127516 - g 70 -5.8 -4.33165 | opp_overlap 1127515 CTAAAGTTATGAAAA CACC TAAG GGTG ATGATATTAGCGTAT Cj1198 1127437 - 1127931 + | S-ribosylhomocysteinase TERM 1189 1128678 - 1128666 - g 74 -3.4 -5.48163 | opp_overlap 1128666, overlap 1128625 1128677 AAACAAACCAAAAAA GCTT GTTTA AAGC TTTTAAAAGCCTTCG Cj1199 1128243 - 1129235 + | putative iron/ascorbate-dependent oxidoreductase Cj1200 1129228 - 1130016 + | putative NLPA family lipoprotein metE 1130028 - 1132292 + | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase TERM 1190 1132380 - 1132399 + G 82 -7.9 -4.38712 | opp_overlap 1132379 GCTATCTTAGATGAT TTAGGGC AATTAA GCCCTAA TTTTATCAGCGTAAC TERM 1191 1132642 - 1132624 - g 85 -2.5 -5.91981 | gap 1 AAAATTTAAAAAAAA GCA-AAGA TTTT TCTTATGC TAGTGATTTAATTTC metF 1132302 - 1133150 + | 5,10-methylenetetrahydrofolate reductase Cj1203c 1133363 - 1133172 - | putative integral membrane protein atpB 1134040 - 1133360 - | F0F1 ATP synthase subunit A radA 1135449 - 1134109 - | DNA repair protein RadA ftsY 1136315 - 1135449 - | putative signal recognition particle protein TERM 1192 1135967 - 1135989 + g 77 -5.7 -4.99035 | AAGTATCACACGCTC CTAAAATCA CTTTT TGATTTTGG TTTTTGTATAAATAA TERM 1193 1136318 - 1136308 - G 72 -2.6 -5.40072 | CCTTTTTTAAAAAAA TTAA ACA TTAA AGTATAGCCTTTTGT Cj1207c 1136872 - 1136315 - | putative lipoprotein thiredoxin TERM 1194 1137059 - 1137037 - gH 70 -5 -4.57533 | overlap 1137032 AACAAGATTATAAAA TATTTAAAGA ATG TCTTAAAATA ATAAAGCTATTTAAA TERM 1195 1137513 - 1137503 - g 89 -4 -5.85425 | opp_overlap 1137503 GAAAGAAAGAAAAAA TGAT AGA ATCA CTTATCGCACTTATA Cj1208 1136955 - 1137581 + | putative 5-formyltetrahydrofolate cyclo-ligase family protein TERM 1196 1137796 - 1137784 - gf 78 -3.4 -5.54403 | AAAAAAGAACAAAAA CTTC AGCAA GAAG AAGAAAAACTAAAAG Cj1209 1137502 - 1139055 + | phosphodiesterase TERM 1197 1139281 - 1139271 - g 74 -3.2 -5.38321 | overlap 1139264 AAATATTATAAAAAA GACA TTA TGCC TTATTTTAAAAAACA Cj1210 1139064 - 1139621 + | putative integral membrane protein TERM 1198 1140710 - 1140724 + GT 73 -3.6 -5.22039 | GGAGATTTGCTCAAT TTTATC TTA GATGAA TTTTTTAAATTTAAA rbn 1141630 - 1140824 - | putative ribonuclease BN Cj1211 1139621 - 1140880 + | putative competence family protein TERM 1199 1141416 - 1141433 + gT 70 -8.5 -2.6155 | opp_overlap 1141420, overlap 1141406 1141415 GTATCGATGTAGGTA GCAACAA CATC TTGTTGC GTTGGTATTAAAAAA glcD 1143016 - 1141634 - | putative glycolate oxidase subunit D Cj1214c 1143744 - 1143019 - | putative exporting protein Cj1215 1143866 - 1145026 + | putative peptidase M23 family protein Cj1216c 1145226 - 1145023 - | hypothetical protein TERM 1200 1145070 - 1145088 + g 100 -8.2 -5.67529 | opp_overlap 1145070 TGATTAAAGAATGTA GAAGAGTT GCA AGCTCTTC TTTTTCTTTTTCATT Cj1217c 1145908 - 1145228 - | conserved hypothetical protein Cj1217c ribA 1146483 - 1145872 - | riboflavin synthase subunit alpha Cj1219c 1149032 - 1146492 - | putative periplasmic protein TERM 1201 1147392 - 1147406 + g 80 -8.6 -3.81741 | TTTACTTAAAGTTGC GGCATT TAA AATGCC TTTAGCTTCTAAATT TERM 1202 1147666 - 1147676 + g 70 -4 -4.93898 | overlap 1147654 GCAGTAAGATCTGCC TTAC CTT GTAA TTTTTGTCCTGCTAT groES 1149194 - 1149454 + | co-chaperonin GroES TERM 1203 1149923 - 1149898 - g 76 -2.7 -5.63645 | gap 1 GTAAAAGATAAAAAA GAAATTGCA-CA AGT TGCTACAATCTC AGCCAACTCTGATGA TERM 1204 1150582 - 1150564 - g 70 -3.9 -5.05601 | TATGACAGAGAAAAA TTACAAG AAAGA CTTGCAA AATTAAGTGGTGGTG groEL 1149475 - 1151112 + | chaperonin GroEL TERM 1205 1151135 - 1151151 + T 82 -10.9 -2.74514 | overlap 1151127 TCTAACCTCTTATCA GCAAGGA TTT TCCTTGC TGATTACCAATTTAA dccS 1152345 - 1151155 - | two-component sensor (histidine kinase) TERM 1206 1151471 - 1151488 + g 79 -8.5 -3.93597 | overlap 1151459 GGAGCAAAAATATTT GCTTGAT TTAA ATCAAGC TTTAGTGTAATTTTT TERM 1207 1152299 - 1152333 + g 79 -5.9 -5.03314 | AAAAAAATACCTGTA GTTGTTAGGTAGATT AATAA AATTTGCCTAATGAC TTTTTTAGCCATAGC dccR 1153003 - 1152338 - | two-component regulator Cj1224 1153151 - 1153750 + | putative iron-binding protein Cj1225 1153761 - 1154009 + | conserved hypothetical protein Cj1225 TERM 1208 1154040 - 1154014 - T 100 -11.1 -5.95449 | opp_overlap 1154013 1154012 AAACAAAATAAAAAA CTTTATCACAA TTTTT TTGTGATAAAG ACTTATTAATTTTTT Cj1226c 1155514 - 1154267 - | putative two-component sensor (histidine kinase) TERM 1209 1154995 - 1155010 + g 77 -4.8 -5.19916 | CAAGCTTTCCTTGGG CAAATT TATC AATTTG TTTTTTAAGTCTTTT Cj1227c 1156185 - 1155511 - | putative two-component regulator TERM 1210 1156233 - 1156257 + r 100 -10.1 -5.27335 | opp_overlap 1156229 1156233 1156236 1156241 TTAAACTAAAATTTA TAACGAAAGGA AAA TCCTTCCGTTA TTTTTATTTAAGCAC TERM 1211 1156257 - 1156233 - R 88 -12.3 -2.82666 | opp_overlap 1156233, overlap 1156229 1156236 1156241 TTAAACTAAAATTTA TAACGAAAGGA AAA TCCTTCCGTTA TTTTTATTTAAGCAC TERM 1212 1156254 - 1156236 - R 82 -9.6 -3.53787 | opp_overlap 1156233, overlap 1156233 1156229 1156241 AACTAAAATTTATAA CGAAAGGA AAA TCCTTCCG TTATTTTTATTTAAG htrA 1157679 - 1156261 - | serine protease (protease DO) TERM 1213 1157482 - 1157462 - G 90 -6.9 -5.55664 | opp_overlap 1157462, overlap 1157447 GGATCATTAAAAAAA TCATCCAAA GGG CTTGGACGA TTTGCTCTTGTAATA cbpA 1157879 - 1158772 + | putative curved-DNA binding protein hspR 1158788 - 1159162 + | heat shock transcriptional regulator kefB 1159168 - 1160793 + | putative glutathione-regulated potassium-efflux system protein Cj1232 1160803 - 1161135 + | hypothetical protein Cj1233 1161132 - 1161752 + | putative HAD-superfamily hydrolase glyS 1161808 - 1163802 + | glycyl-tRNA synthetase subunit beta TERM 1214 1164137 - 1164119 - g 72 -2.5 -5.49568 | AATTGAAAACAAAAA GATTTTT CCGCC AAAAACC ATACAAGAACGCATC Cj1235 1163799 - 1164620 + | putative peptidase M23 family protein TERM 1215 1164869 - 1164888 + G 73 -3.7 -5.1861 | CTTGAATTAAGACCT GAAATTT TTTCTC AAATTTC TTTTTTCATCATAGA TERM 1216 1165292 - 1165314 + G 70 -4.2 -5.00616 | opp_overlap 1165270 1165304, overlap 1165293 CACGAAGTTTTTAGC CCTTTTGAAG TAT CTTTAAAAGA TTTTTTCGGCAAAAG TERM 1217 1165293 - 1165313 + G 72 -7.7 -3.60048 | opp_overlap 1165270 1165304, overlap 1165292 ACGAAGTTTTTAGCC CTTTTGAAG TAT CTTTAAAAG ATTTTTTCGGCAAAA Cj1236 1164617 - 1165567 + | conserved hypothetical protein Cj1236 Cj1237c 1166538 - 1165564 - | putative phosphatase TERM 1218 1166337 - 1166321 - G 83 -8.7 -4.07568 | opp_overlap 1166319 CTTGCCTTTCTAAAA GCTGCAG TCG CTACAGC TCTCGCTTTGCTTAA TERM 1219 1166373 - 1166383 + g 78 -4 -5.34055 | opp_overlap 1166373 GCTCTTTAGCTAAAA TACT CAA AGTA TTTTTTAATCTTTGT pdxJ 1166594 - 1167367 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 1220 1168175 - 1168153 - g 76 -6.4 -4.55383 | AATTTACAAAAAGAA TTGCTTTTAA ATT TTAAAGGCAA GGGCGTTTATCTACC TERM 1221 1168204 - 1168214 + G 74 -6.8 -4.26076 | CCCTATCCTTTAGTG GCTG ATA CAGC TTTTACTAAGACTGG pdxA 1167364 - 1168458 + | 4-hydroxythreonine-4-phosphate dehydrogenase Cj1240c 1169050 - 1168448 - | putative periplasmic protein TERM 1222 1168708 - 1168696 - G 75 -5.5 -4.82128 | opp_overlap 1168696 TGAGTAAAGATAAAA GAGGA TTT TCCCC TGCTTTTGTATTTTG TERM 1223 1169190 - 1169206 + G 85 -7.3 -4.9725 | opp_overlap 1169172 AAAAAAGCTCTTTTT GCACTAG CTC TTAGTGC TTTTTGTATGGGCGT TERM 1224 1170343 - 1170333 - g 78 -4 -5.42265 | TTAAATTATAAAAAA TTTC AAA GAAA AAGTTTTACAAAGGT Cj1241 1169163 - 1170362 + | putative MFS (Major Facilitator Superfamily) transporter protein Cj1242 1170418 - 1170738 + | hypothetical protein TERM 1225 1170792 - 1170772 - f 83 -8.4 -4.17516 | opp_overlap 1170768 CTCAAACTACATAAA CGAGAATT CCAAT AATTCTCG TAAAATTTCTAATAA hemE 1170922 - 1171944 + | uroporphyrinogen decarboxylase TERM 1226 1172260 - 1172244 - g 95 -8.1 -5.56264 | GCTAAAGATAAAAAA TTGCTTA TTT TAAGCAA TGGTACAGCTGTATT Cj1244 1171941 - 1172843 + | putative radical SAM domain protein Cj1245c 1174036 - 1172840 - | hypothetical protein TERM 1227 1173374 - 1173358 - G 72 -6.7 -4.18494 | CATTTTTATTGAAAA TTTTATC CTT GATAAAA ATCAAATGAAAGTCA uvrC 1175840 - 1174038 - | excinuclease ABC subunit C TERM 1228 1174184 - 1174202 + g 74 -2.4 -5.54885 | overlap 1174186 CTAAATTTGCAAGCT TAGAACTT TTC AAGTCCTG TTTTTTCTTAGTATT Cj1247c 1176327 - 1175833 - | hypothetical protein TERM 1229 1176848 - 1176838 - g 78 -4 -5.41746 | AATCTTCCAAAAAAA CAAA CCG TTTG GATGAGTCATTCTGA guaA 1176466 - 1178001 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1230 1178010 - 1178058 + F 83 -8 -4.42464 | gap 2, opp_overlap 1178031 1178036 1178037, overlap 1178023 GGAATAATCCATTTT TTCTAGCTCTTATTTTTAATATAA AAT TTTTAT-AAAAATAAG-GCTAGAA TTTATTTAAGAAATT TERM 1231 1178216 - 1178196 - g 81 -2.5 -5.71983 | opp_overlap 1178196, overlap 1178199 GGAATGATAAAAAAA GTATGCCAA GTG TTGGTATGC TTGTGGAATTTAGAA Cj1249 1178087 - 1179547 + | hypothetical protein purD 1179787 - 1181037 + | phosphoribosylamine--glycine ligase Cj1251 1181034 - 1181486 + | conserved hypothetical protein Cj1251 TERM 1232 1181498 - 1181512 + G 70 -8.6 -2.66272 | overlap 1181494 1181493 GTAAATTTTCCCTAT TGCTAG GAA CTAGCA TAGCTTTAAATGCAG Cj1252 1181476 - 1183524 + | putative periplasmic protein pnp 1183594 - 1185753 + | polynucleotide phosphorylase/polyadenylase TERM 1233 1185795 - 1185820 + G 85 -8.5 -4.56314 | opp_overlap 1185795 CCTTTTTTTGACAAA GATTCTAAAAT CTTA ATTTTAGGATC TTTTCCTTCTATTAA Cj1254 1185750 - 1186232 + | hypothetical protein Cj1255 1186290 - 1186499 + | putative isomerase Cj1256c 1187158 - 1186496 - | hypothetical protein Cj1257c 1188360 - 1187176 - | putative efflux pump TERM 1234 1187599 - 1187589 - G 78 -4 -5.40072 | TTGGTGCGAAAAAAA GATT GCT AATC CCACTTGCAGCCACC Cj1258 1188414 - 1188869 + | putative phosphotyrosine protein phosphatase TERM 1235 1188967 - 1188993 + F 100 -9.5 -4.93288 | opp_overlap 1188966 TCCTTAAAATTACAC GCCTAGCTTAA ATCCC TTTAGCTAGGC TTTTCTTTAGATGTT porA 1189121 - 1190395 + | major outer membrane protein TERM 1236 1190419 - 1190437 + T 100 -10.2 -5.64274 | opp_overlap 1190399 CAAGTCTAACTTCAA GGCGGGGT TTT GCTCCGCC TTTTTTTATGCCTGA TERM 1237 1190509 - 1190481 - T 72 -3.3 -5.38951 | gap 1 AATTTATATAAAAAA TTTTCCC-AAGC TAAAAC GCTTTAGGAAAA TTAAGACTTAAACCA dnaJ 1191631 - 1190510 - | chaperone DnaJ racR 1191788 - 1192459 + | two-component regulator TERM 1238 1192785 - 1192811 + G 70 -6 -4.32049 | opp_overlap 1192785 AAAATATCATAGCAA TCTTTATTTTGA TGT TCAATGTAAAGA TTTTGATGGCTTGTA racS 1192456 - 1193691 + | two-component sensor (histidine kinase) TERM 1239 1194114 - 1194125 + G 75 -4.4 -5.24531 | CATAGCATTAATTCT GATG CAAC CATC TTTTTTATAGAGGAT recR 1193691 - 1194263 + | recombination protein RecR hydD 1194796 - 1194260 - | putative hydrogenase maturation protease hydC 1195485 - 1194793 - | Ni/Fe-hydrogenase B-type cytochrome subunit hydB 1197211 - 1195496 - | Ni/Fe-hydrogenase large subunit hydA 1198353 - 1197214 - | Ni/Fe-hydrogenase small chain mnmC 1200315 - 1198474 - | 5-methylaminomethyl-2-thiouridine methyltransferase TERM 1240 1199045 - 1199034 - G 71 -3 -5.31275 | TCTCATCATAAAAAA CAAA GTCT TTTG CATCTGCACCCATAG TERM 1241 1199672 - 1199684 + g 72 -2.7 -5.34555 | overlap 1199667 ATCATTTCTCTTTTT CTAAA ACC TTTGG TTTTTTCTACTCTAA amiA 1202291 - 1200312 - | N-acetylmuramoyl-L-alanine amidase TERM 1242 1201510 - 1201526 + g 71 -6.7 -3.91984 | overlap 1201506 CTAGTAGTTTCTTTT GAAAAAA TTA TTTTTTC TTCTTTAAAAGATAT Cj1270c 1203382 - 1202291 - | putative 2-nitropropane dioxygenase,oxidoreductase protein tyrS 1204584 - 1203379 - | tyrosyl-tRNA synthetase TERM 1243 1203695 - 1203711 + g 76 -5.2 -5.07567 | opp_overlap 1203695 TCTGTAATCTCTAAA GCTAAA TTTTC TTTAGC TTTTTTAGGATGTAA spoT 1206791 - 1204596 - | putative guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase rpoZ 1206999 - 1206775 - | DNA-directed RNA polymerase subunit omega pyrH 1207729 - 1207010 - | uridylate kinase Cj1275c 1208974 - 1207781 - | putative peptidase M23 family protein TERM 1244 1208975 - 1208954 - G 100 -3.8 -6.32976 | AAAAAAACAAAAAAA GATAAGAA TATTTT TTCTCATC TTTTAACCTTAAACA Cj1276c 1209777 - 1208971 - | putative integral membrane protein TERM 1245 1209578 - 1209552 - G 72 -8.2 -3.32769 | overlap 1209557 TTTTCAAACGATCAA TTAAATCCTTAG GAT CTAAAGATTCAA GTCCAGCAAAAAATG Cj1277c 1210429 - 1209764 - | putative ABC transporter ATP-binding protein TERM 1246 1210120 - 1210104 - G 72 -8.1 -3.28791 | ACTTTTTTGCTATAA CCTTTAA TCA TTAAAGG CAACATAACATTTTT trmB 1211677 - 1210499 - | tRNA (guanine-N(7))-methyltransferase TERM 1247 1210892 - 1210910 + g 71 -3.2 -5.252 | ATCTTCATATTTGCT TGAAATTT CTA AATTTTCA TTTTTTCTAAGGCTA TERM 1248 1211062 - 1211072 + g 80 -6.8 -4.82901 | overlap 1211059 CTTTCCCAATAACTC GCCT ATG AGGC TTTTTATCCCAAGGA TERM 1249 1211509 - 1211527 + g 77 -4.6 -5.21709 | opp_overlap 1211512, overlap 1211510 GTTTATCGCCTTTAA TCACAAAA CCA TTTTGTGC TTTTTTAATCTGCAG TERM 1250 1211510 - 1211526 + g 77 -8.1 -3.72302 | opp_overlap 1211512, overlap 1211509 TTTATCGCCTTTAAT CACAAAA CCA TTTTGTG CTTTTTTAATCTGCA Cj1279c 1212912 - 1211677 - | putative fibronectin domain-containing lipoprotein TERM 1251 1212495 - 1212521 + gr 78 -10.2 -2.63257 | opp_overlap 1212494 1212498, overlap 1212500 1212512 1212512 CAGCTTGAACAAAAG GAACAGCTTCAA GTC TTGGAGCTGTGC TCACTTCTATAACCT TERM 1252 1212518 - 1212498 - GR 79 -8.3 -3.82261 | opp_overlap 1212495 1212500 1212512 1212512, overlap 1212494 CTTGAACAAAAGGAA CAGCTTCAA GTC TTGGAGCTG TGCTCACTTCTATAA Cj1280c 1213825 - 1212857 - | putative ribosomal pseudouridine synthase mrdB 1213903 - 1215003 + | RodA protein homolog TERM 1253 1215099 - 1215085 - f 70 -7.8 -3.25942 | opp_overlap 1215085 AGTTGGTTAGAGCAA CCGGCT CAT AACCGG TTGGTCGCAGGTTCG TERM 1254 1215798 - 1215811 + G 78 -6.7 -4.57205 | overlap 1215797 GAGTCTTTATTTTAT CCATC AATG GATGG TTTATTTAAATTTTT ktrB 1215456 - 1216799 + | putative K+ uptake protein ktrA 1216810 - 1217460 + | putative K+ uptake protein TERM 1255 1217471 - 1217506 + T 90 -5.6 -5.68438 | gap 1, opp_overlap 1217473, overlap 1217473 ACTAAGCAAGATTTA AAGCCTTACAAGCCTTT ACA AAACGCTT-TAAGGCTG TTTTTTCTTTGGTAG TERM 1256 1217473 - 1217504 + T 83 -8.2 -4.47052 | gap 1, opp_overlap 1217473, overlap 1217471 TAAGCAAGATTTAAA GCCTTACAAGCCTTT ACA AAACGCTT-TAAGGC TGTTTTTTCTTTGGT TERM 1257 1217504 - 1217473 - T 76 -8.2 -3.78902 | gap 1, opp_overlap 1217473 1217471 TAAGCAAGATTTAAA GCCTTACAAGCCTTT ACA AAACGCTT-TAAGGC TGTTTTTTCTTTGGT Cj1285c 1218128 - 1217457 - | conserved hypothetical protein Cj1285c TERM 1258 1218137 - 1218155 + r 82 -10.4 -2.82015 | opp_overlap 1218129 1218141, overlap 1218129 1218139 1218141 AAATCATCTCTTTTA TAGAGTGT TAA ACACTCTA TCTCCTGCATCTCCA TERM 1259 1218139 - 1218153 + r 71 -8.6 -2.95774 | opp_overlap 1218129 1218141, overlap 1218129 1218137 1218141 ATCATCTCTTTTATA GAGTGT TAA ACACTC TATCTCCTGCATCTC upp 1218760 - 1218134 - | uracil phosphoribosyltransferase TERM 1260 1218661 - 1218648 - G 86 -5.3 -5.54079 | overlap 1218621 TCAAAAAGCAAAAAA GATGA AATT TCATC GATTAACATACGAAA Cj1287c 1219992 - 1218757 - | malate oxidoreductase TERM 1261 1218913 - 1218927 + g 72 -4.3 -5.0133 | TCCAAATTCTAAAGT GCTTA AATTA TAAGC TTTTTTAACCGCATC gltX 1221385 - 1219994 - | glutamyl-tRNA synthetase Cj1289 1221450 - 1222265 + | possible periplasmic protein TERM 1262 1222306 - 1222275 - T 95 -11.9 -3.79689 | opp_overlap 1222275 1222281, overlap 1222269 1222281 AGATAAAAATTACAA TTAAAATTTCCCT TATAAT AGGGAAATTTTAA TGTCTTGCAAGATAA TERM 1263 1222275 - 1222306 + T 90 -11.9 -3.07344 | opp_overlap 1222275 1222269 1222281, overlap 1222281 AGATAAAAATTACAA TTAAAATTTCCCT TATAAT AGGGAAATTTTAA TGTCTTGCAAGATAA TERM 1264 1222300 - 1222281 - T 74 -6.5 -4.53685 | opp_overlap 1222281 1222275, overlap 1222275 1222269 AAATTACAATTAAAA TTTCCCT TATAAT AGGGAAA TTTTAATGTCTTGCA TERM 1265 1222281 - 1222300 + T 74 -6.5 -4.43213 | opp_overlap 1222275 1222269 1222281, overlap 1222275 AAATTACAATTAAAA TTTCCCT TATAAT AGGGAAA TTTTAATGTCTTGCA accC 1223634 - 1222303 - | biotin carboxylase accB 1224091 - 1223636 - | putative biotin carboxyl carrier protein of acetyl-CoA carboxylase TERM 1266 1223821 - 1223811 - G 76 -6.8 -4.38712 | CCTACTTTTACAAAA GGTG CTG CACC TGGACTTGGAGCTTG TERM 1267 1224783 - 1224749 - g 81 -3.6 -5.59879 | gap 1, overlap 1224768 1224769 TATAAAGATAAAAAA GGCAAGTATCAAGCC CAAACT GGCATAAC-CTTGCC AAGAATTTTAAAATA dcd 1224239 - 1224799 + | deoxycytidine triphosphate deaminase pseB 1224849 - 1225853 + | UDP-GlcNAc-specific C4,6 dehydratase/C5 epimerase pseC 1225855 - 1226985 + | C4 aminotransferase specific for PseB product Cj1295 1226978 - 1228285 + | conserved hypothetical protein Cj1295 Cj1296 1228282 - 1228641 + | hypothetical protein TERM 1268 1228810 - 1228793 - g 70 -5.5 -4.2074 | opp_overlap 1228793 TGCTGAAGAGAGAAA TACCAGC TTTT GCAGGTA TTTTAAGGAATTTAA Cj1297 1228638 - 1229075 + | hypotehtical protein Cj1297 Cj1298 1229096 - 1229887 + | putative N-acetyltransferase acpP2 1229918 - 1230148 + | putative acyl carrier protein Cj1300 1230145 - 1231038 + | putative SAM domain containing methyltransferase Cj1301 1231031 - 1231447 + | hypothetical protein TERM 1269 1232114 - 1232102 - g 81 -3.5 -5.55769 | CCTTACAAGAAAAAA TTAAA ACT TTTAA AAAACAAGGGTTTTT TERM 1270 1232694 - 1232716 + G 93 -5.6 -5.84011 | opp_overlap 1232696, overlap 1232696 TATGAGTGATAAATT AAGCGATAGT GGG ATTATCGCTA TTTTTGTTTTTTCTT TERM 1271 1232696 - 1232714 + G 85 -8.2 -4.48934 | opp_overlap 1232696, overlap 1232694 TGAGTGATAAATTAA GCGATAGT GGG ATTATCGC TATTTTTGTTTTTTC Cj1302 1231444 - 1233006 + | putative HAD-superfamily phosphatase, subfamily IIIC fabH2 1232996 - 1234057 + | 3-oxoacyl-(acyl carrier protein) synthase III acpP3 1234057 - 1234278 + | putative acyl carrier protein TERM 1272 1234273 - 1234297 + T 100 -13.1 -4.44915 | opp_overlap 1234270 AATTTAGCAAAGCTT GATTAAAACCT TTA AGGTTTTAATC TTTTATCACTAATTC Cj1305c 1235509 - 1234292 - | hypothetical protein TERM 1273 1234379 - 1234405 + g 100 -9.6 -4.59853 | AGAGATGGAATTTTC TTGCATAAAAGA TTT TCTTTTTTGCAA TTTTTCAAGCATTAA TERM 1274 1234763 - 1234753 - G 85 -2.6 -5.93809 | TTTTTAGAAAAAAAA TAAT CCT ATTA TGTGGAAAATCTTCA Cj1306c 1236748 - 1235522 - | hypothetical protein Cj1307 1236809 - 1238317 + | putative amino acid activating enzyme TERM 1275 1238558 - 1238607 + G 70 -6.5 -4.17316 | opp_overlap 1238559 1238560, overlap 1238560 1238604 GAAAATATCAAAAAA ATGCTTGAAACTGCAATGAAAGA CTAA TCTTTCCTTGCAAGTTCAAGCTG TTCTTTTAAAGAACT TERM 1276 1238606 - 1238559 - g 100 -12.2 -5.69023 | opp_overlap 1238558 1238560 1238604, overlap 1238560 AAAATATCAAAAAAA TGCTTGAAACTGCAATGAAAGA CTAA TCTTTCCTTGCAAGTTCAAGCT GTTCTTTTAAAGAAC Cj1308 1238357 - 1238584 + | putative acyl carrier protein TERM 1277 1238605 - 1238560 - T 100 -15.7 -3.97753 | opp_overlap 1238558 1238560 1238604, overlap 1238559 AAATATCAAAAAAAT GCTTGAAACTGCAATGAAAGA CTAA TCTTTCCTTGCAAGTTCAAGC TGTTCTTTTAAAGAA TERM 1278 1238560 - 1238605 + T 100 -13.5 -3.68435 | opp_overlap 1238560 1238559, overlap 1238558 1238604 AAATATCAAAAAAAT GCTTGAAACTGCAATGAAAGA CTAA TCTTTCCTTGCAAGTTCAAGC TGTTCTTTTAAAGAA Cj1309c 1239651 - 1238581 - | hypothetical protein TERM 1279 1238832 - 1238844 + g 76 -6.3 -4.64361 | CTTTAGCAATATCTT TTTGC ACT GCAAA TTTTAATCTTTTTTC TERM 1280 1239557 - 1239571 + g 85 -7.2 -4.89562 | opp_overlap 1239557 TTTGGGTAAATATAA GCTTTT TGC AAAAGC TTTTCTTCGTTTTGC TERM 1281 1239571 - 1239557 - G 71 -7.2 -3.81488 | opp_overlap 1239557 TTTGGGTAAATATAA GCTTTT TGC AAAAGC TTTTCTTCGTTTTGC TERM 1282 1239589 - 1239600 + g 75 -4.4 -5.24551 | TTCTTCGTTTTGCAT CAAG AAGC CTTG TTTTTCTTGATTTCC Cj1310c 1240887 - 1239673 - | hypothetical protein TERM 1283 1240218 - 1240197 - G 70 -6.5 -4.07568 | TTTCTCTTCCTAAAA TGCACGCCA AAAA TGGCAAGCA AACACCTGAATTATC pseF 1240966 - 1241664 + | putative acylneuraminate cytidylyltransferase TERM 1284 1242260 - 1242245 - g 81 -6.2 -5.09426 | CCTAATCTTAAAAAA TTGCAA AAAT TTGCAA AATTACATAACAATA pseG 1241648 - 1242472 + | nucleotidase specific for PseC product,UDP-4-amino-4,6-dideoxy-beta-L-AltNAc pseH 1242469 - 1242942 + | N-acetyltransferase specific for PseC product,UDP-4-amino-4,6-dideoxy-beta-L-AltNAc hisF 1243653 - 1242907 - | imidazole glycerol phosphate synthase subunit TERM 1285 1243158 - 1243173 + g 86 -3.2 -5.94597 | opp_overlap 1243158 CCACAGAAGTTAAAA GAAGCT CTCC AGCTCC TTTTTTTTCATATTC hisH 1244259 - 1243654 - | imidazole glycerol phosphate synthase subunit HisH TERM 1286 1244027 - 1244037 + g 91 -5.4 -5.9873 | opp_overlap 1244027 ATTCCTAAACAAATG CCTA AAA TAGG TTTTTTTTGTACTAA pseA 1245392 - 1244256 - | pseudaminic acid biosynthesis PseA protein TERM 1287 1245612 - 1245594 - H 72 -6.2 -4.30933 | opp_overlap 1245592 1245594 TATAAATTGAAGAAA TATATAAT ATA ATTATATA TCATTTTAGTCAGGA pseI 1245650 - 1246681 + | Pse synthetase TERM 1288 1248070 - 1248094 + G 70 -8.7 -2.60714 | opp_overlap 1248071, overlap 1248069 GCAAGGATAGAAGGA ACCATAGAAAA ACC TTTTCTATGGG CTTGTGAGAATTTAC TERM 1289 1248093 - 1248071 - g 100 -12.2 -3.52147 | opp_overlap 1248070 1248069 CAAGGATAGAAGGAA CCATAGAAAA ACC TTTTCTATGG GCTTGTGAGAATTTA maf1 1246678 - 1248627 + | motility accessory factor (function unknown) TERM 1290 1248744 - 1248763 + G 74 -5 -5.00884 | opp_overlap 1248760 TCTTTTAATTTTTGG GGACATTT AGAA AAAAGTCC TTTTTTAAAAGACAT TERM 1291 1248776 - 1248760 - g 81 -5.9 -5.29782 | opp_overlap 1248744 GACATTTAGAAAAAA GTCCTTT TTT AAAAGAC ATGGAAGTTATAAGT TERM 1292 1249420 - 1249408 - g 80 -6.3 -4.99134 | ATTCTAAAGTAAAAA TCATC CAA GATGA ACAAAGATTGCGTCC Cj1319 1248624 - 1249595 + | putative nucleotide sugar dehydratase TERM 1293 1249636 - 1249604 - g 76 -5.1 -5.04249 | opp_overlap 1249607, overlap 1249589 TGTTTAAAAAAGAAA TTTCTTTTATAAAAA GTC TTTTTAATAAAGAAA ATATCGCCCTACATG TERM 1294 1250498 - 1250472 - g 76 -6.1 -4.57569 | gap 1, overlap 1250458 1250475 GGATTTTTTTAAAAA TCA-CGATAAAT GTAA ATTTATCGATGA AAAAAGCAATGAAAA Cj1320 1249588 - 1250742 + | putative aminotransferase (degT family) Cj1321 1250852 - 1251394 + | putative transferase TERM 1295 1251629 - 1251618 - g 74 -3 -5.38054 | opp_overlap 1251612 1251618, overlap 1251612 TTCTACAAAGAAAAA TAGA TTTT TCTA ATTTTAACGCCGGAA Cj1322 1251467 - 1251787 + | hypothetical protein Cj1323 1251775 - 1252161 + | hypothetical protein Cj1324 1252278 - 1253399 + | hypothetical protein Cj1325 1253417 - 1254092 + | putative methyltransferase TERM 1296 1254129 - 1254095 - f 100 -15.4 -5.45813 | TATTAAAAAATAAAA TTTTGCCTTTATTTTA AGG CAAAATAAAGGCAAAA CTATGAAAAAAACTT TERM 1297 1254222 - 1254232 + G 72 -5.4 -4.75309 | GAAATCGCAGCAGAT TCAG GAG CTGA TTTTGTTAAATTTCA TERM 1298 1254628 - 1254614 - g 83 -7.8 -4.56597 | TGTGCTTTGCAAAAA TGGCGC TAA ACGCCA AAATATCACTCTTTT TERM 1299 1254703 - 1254723 + G 93 -11.3 -3.30854 | opp_overlap 1254703, overlap 1254693 TTAAAGCCATGCAAA GCTTAAAAG ACG CTTTTAAGC TTGATGTGGGTTATT TERM 1300 1254723 - 1254703 - g 93 -11.3 -3.70076 | opp_overlap 1254703 1254693 TTAAAGCCATGCAAA GCTTAAAAG ACG CTTTTAAGC TTGATGTGGGTTATT TERM 1301 1254846 - 1254827 - g 70 -4.4 -4.9792 | gap 1 TACTCTAGACAAAAA TATG-TCAG GGC CTGATCATA AAGCAAGCCTAGAAC neuB2 1254132 - 1255136 + | N-acetylneuraminic acid synthetase neuC2 1255129 - 1256283 + | putative UDP-N-acetylglucosamine 2-epimerase Cj1329 1256292 - 1257317 + | putative sugar-phosphate nucleotide transferase Cj1330 1257314 - 1258219 + | hypothetical protein TERM 1302 1258807 - 1258789 - g 73 -9 -3.14587 | overlap 1258787 TTTTAGAAAATGATA GTGTTTTT GGC AAAAACAC AGGGCTTTTTGTAAT ptmB 1258212 - 1258919 + | acylneuraminate cytidylyltransferase (flagellin modification) ptmA 1258919 - 1259689 + | flagellin modification protein A pseD 1259677 - 1261638 + | PseD protein maf3 1261635 - 1263494 + | motility accessory factor (function unknown) TERM 1303 1264897 - 1264921 + G 70 -8.7 -2.60714 | opp_overlap 1264898, overlap 1264896 GCAAGGATAGAAGGA ACCATAGAAAA ACC TTTTCTATGGG CTTGTGAGAATTTAC TERM 1304 1264920 - 1264898 - g 100 -12.2 -3.52147 | opp_overlap 1264897 1264896 CAAGGATAGAAGGAA CCATAGAAAA ACC TTTTCTATGG GCTTGTGAGAATTTA maf4 1263507 - 1265454 + | motility accessory factor (function unknown) pseE 1265451 - 1267337 + | PseE protein TERM 1305 1267365 - 1267340 - T 70 -6.2 -4.18697 | opp_overlap 1267339, overlap 1267341 AAAAGCACTTTAAAA GCTTAGATGC ATAAAA GCATCTAAGA AATTATTGAAGAAGT TERM 1306 1267364 - 1267341 - T 77 -9.7 -3.10134 | opp_overlap 1267339, overlap 1267340 AAAGCACTTTAAAAG CTTAGATGC ATAAAA GCATCTAAG AAATTATTGAAGAAG flaB 1269086 - 1267368 - | flagellin TERM 1307 1267481 - 1267462 - G 70 -4.4 -4.89852 | gap 1 TTATATTTAGAAAAA TTTGCA-CT CTC AGCTGCAAA GTCTACATCTCTTAT TERM 1308 1269182 - 1269200 + r 90 -11.8 -3.36766 | opp_overlap 1269182, overlap 1269177 GTTTAAAATAAAAAA GCCTAGTT CTA AACTAGGC TTGGATTTGTATATA TERM 1309 1269200 - 1269182 - R 100 -11.8 -5.79595 | opp_overlap 1269182 1269177 GTTTAAAATAAAAAA GCCTAGTT CTA AACTAGGC TTGGATTTGTATATA flaA 1270950 - 1269232 - | flagellin Cj1340c 1272864 - 1271047 - | conserved hypothetical protein Cj1340c (1318 family) maf6 1274684 - 1272861 - | motility accessory factor (function unknown) maf7 1275935 - 1274694 - | motility accessory factor (function unknown) Cj1343c 1276450 - 1275935 - | putative periplasmic protein Cj1344c 1277458 - 1276451 - | O-sialoglycoprotein endopeptidase TERM 1310 1276677 - 1276701 + g 71 -2.3 -5.43621 | opp_overlap 1276695 CCTACAACGCCAAAA TTTTTAAATTT ATA AAGATTAAAAA TTTTTTCTAATTTAT Cj1345c 1278849 - 1277455 - | putative periplasmic protein dxr 1279921 - 1278851 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase cdsA 1280643 - 1279918 - | phosphatidate cytidylyltransferase TERM 1311 1280442 - 1280418 - G 75 -5.7 -4.79384 | overlap 1280434 ATAACAAAACTAAAA TCCCAAAAAGC AAA GCTTTATGCGA TAAACTTCCCAAAAT TERM 1312 1280498 - 1280514 + g 70 -8.1 -3.05816 | opp_overlap 1280498 GAGATATTTTCTAAA GCAAAAA GTT TTTTTGC TTCACTAAAAGATAG TERM 1313 1280514 - 1280498 - G 74 -8.1 -3.57119 | opp_overlap 1280498 GAGATATTTTCTAAA GCAAAAA GTT TTTTTGC TTCACTAAAAGATAG TERM 1314 1280580 - 1280569 - G 74 -3 -5.35222 | overlap 1280558 AAAATTGATAAAAAA TTGA TCAA TCAA CGCGATAATAATAAT Cj1348c 1280990 - 1280652 - | putative coiled-coil protein TERM 1315 1280908 - 1280924 + g 71 -8 -3.524 | overlap 1280890 GCAAAACCTTCTTTT GCAAGC TCATT GCTTGC TTGTGTAGCTGGATA Cj1349c 1282299 - 1280992 - | putative fibronectin/fibrinogen-binding protein TERM 1316 1281315 - 1281327 + g 70 -6.3 -4.08058 | overlap 1281315 AATAAAAATTTGCGA CAAGA TCT TCTTG TTTATGATCTTGATT TERM 1317 1282232 - 1282244 + g 81 -4.9 -5.40072 | TTGTCATTGATACGC TTGAT AAA ATCAA TTTTTTTAAACCGAG mobA 1282361 - 1282936 + | putative molybdopterin-guanine dinucleotide biosynthesis protein TERM 1318 1283168 - 1283155 - g 78 -3.1 -5.54403 | overlap 1283149 AAAAAAGAAGAAAAA CAAGA CTTT TCTCG CTTAGCTTTGGCTAA TERM 1319 1283592 - 1283604 + G 76 -3.5 -5.47159 | TGTATCTACTGCTAT TTTAT ATA ATAAA TTTTTATTTGTTCCA pldA 1282933 - 1283922 + | phospholipase A TERM 1320 1284740 - 1284750 + G 83 -6.8 -5.03715 | overlap 1284744 GTGATTGTAAGCGTT GGGA TTA TCCC TTTTTTAGGGCTAAT ceuB 1284008 - 1284976 + | enterochelin uptake permease TERM 1321 1285114 - 1285131 + G 76 -6.3 -4.6526 | TAGTAGCTATTTGTA TCGCTGT TTCA ACAGTGA TTTTTCAAACTTTAT TERM 1322 1285675 - 1285695 + G 74 -6.9 -4.3129 | overlap 1285669 GCACCGCACTTGTAG GTCCTATAA CCT TTTTAGGAC TTTTAGTAGTAAATA ceuC 1284969 - 1285907 + | enterochelin uptake permease ceuD 1285904 - 1286659 + | enterochelin uptake ATP-binding protein TERM 1323 1286692 - 1286704 + G 86 -3.4 -5.83822 | AAAATCTTTAGTTTT TGCA TTTTT TGCA TTTTTTTTAAGTCTA TERM 1324 1287015 - 1287005 - g 74 -5.4 -4.91473 | CAATTTAAAAACAAA CCTA GTG TAGG TGGAGTACAACAAGT ceuE 1286672 - 1287664 + | enterochelin uptake periplasmic binding protein TERM 1325 1287780 - 1287802 + T 77 -8.4 -3.54424 | overlap 1287783 GAGACCCGTTAAGAT CTGCACCCTT AGC AGGGGTGTGG TTTCAGCCACTCACC TERM 1326 1287783 - 1287799 + T 71 -8.7 -2.90813 | overlap 1287780 ACCCGTTAAGATCTG CACCCTT AGC AGGGGTG TGGTTTCAGCCACTC TERM 1327 1287889 - 1287861 - T 72 -3.1 -5.29742 | overlap 1287864 1287866 ATACAAAAAAATAAA TAATACCTAGCTT AAA AAGCTAGGAAAAA TCAAAGGCTAAGATA TERM 1328 1287886 - 1287864 - T 91 -9.2 -4.65305 | overlap 1287861 1287866 CAAAAAAATAAATAA TACCTAGCTT AAA AAGCTAGGAA AAATCAAAGGCTAAG TERM 1329 1287884 - 1287866 - T 100 -11.8 -3.8648 | overlap 1287864 1287861 AAAAAATAAATAATA CCTAGCTT AAA AAGCTAGG AAAAATCAAAGGCTA Cj1356c 1288444 - 1287890 - | putative integral membrane protein TERM 1330 1288572 - 1288555 - R 100 -9.9 -5.67711 | CAAAGAAAAGAAAAA GCCCTAT GATT ATAGGGC TTAAGAATTATTTTT nrfA 1290412 - 1288580 - | putative periplasmic cytochrome C TERM 1331 1288945 - 1288960 + g 72 -6.2 -4.28656 | overlap 1288936 TTTGAGCTTTACGAT GAAGTT CTAA AACTTC TTTTAGCTCTTCGCT TERM 1332 1288963 - 1288977 + g 78 -4.3 -5.44119 | GTTCTAAAACTTCTT TTAGC TCTTC GCTAA TTTTTTTCGCATCAG TERM 1333 1290292 - 1290279 - G 71 -2.3 -5.38326 | overlap 1290280 CTAAGCAAAGAAAAA TCAGC ATTT GCTGC AATGGCATTTTTATT nrfH 1290942 - 1290427 - | putative periplasmic cytochrome C TERM 1334 1290531 - 1290550 + g 73 -5.8 -4.64334 | gap 1, opp_overlap 1290531 1290530 CTGTTTGAGCAAAAT CTGCATGAC AGC GT-ATGCAG TTTTCTTGCACCATT ppk 1291131 - 1293215 + | polyphosphate kinase TERM 1335 1293244 - 1293218 - T 78 -6.7 -4.72729 | opp_overlap 1293218, overlap 1293213 TAAGGAAAACTAAAA GTTTTTAGGGT TTTAC ACCTTAAAAAC TTTAAACTATGAATT TERM 1336 1293218 - 1293244 + T 79 -8.9 -3.64371 | opp_overlap 1293218 1293213 TAAGGAAAACTAAAA GTTTTTAGGGT TTTAC ACCTTAAAAAC TTTAAACTATGAATT Cj1360c 1293571 - 1293527 - | putative proteolysis tag for 10Sa_RNA Cj1361c 1294111 - 1293659 - | hypothetical protein TERM 1337 1294446 - 1294431 - g 74 -3.2 -5.39721 | opp_overlap 1294431 CTATGATAGAAAAAA GCGG AGATTTAG CCGC TATTTTAACCAATCT TERM 1338 1294900 - 1294887 - g 71 -2.3 -5.39721 | opp_overlap 1294888 1294889 1294898 1294899 TTATCACAGAAAAAA GGGCT AATG AGGCC TTAAATTCTTTAGGG ruvB 1294160 - 1295167 + | Holliday junction DNA helicase B TERM 1339 1295233 - 1295244 + G 75 -4.4 -5.33848 | ATTTCTTTTGCTTTA CCTT TTTA AAGG TTTTTTACTTGTAAT amaA 1295171 - 1296214 + | acid membrane antigen A TERM 1340 1296215 - 1296234 + T 93 -10.8 -3.97088 | opp_overlap 1296210 1296215 AAGAATTTAATTTAA CTTGCCTT AAAA AAGGCAAG TTTGATGTTCTAGGC TERM 1341 1296234 - 1296215 - T 85 -10.8 -3.22106 | opp_overlap 1296215, overlap 1296210 AAGAATTTAATTTAA CTTGCCTT AAAA AAGGCAAG TTTGATGTTCTAGGC fumC 1297635 - 1296244 - | fumarate hydratase Cj1365c 1300816 - 1297691 - | putative secreted serine protease glmS 1302615 - 1300819 - | D-fructose-6-phosphate amidotransferase TERM 1342 1301036 - 1301046 + g 78 -4 -5.45813 | CTAGCAATAAGCTCT TCAA CAT TTGA TTTTGTTTTTTCATA TERM 1343 1301730 - 1301716 - G 71 -8.6 -2.82834 | CATTGCAGCATGATA GCTTGT TCC ACAAGC ACAAAGCGTGATTTC Cj1367c 1304968 - 1302620 - | putative nucleotidyltransferase TERM 1344 1305865 - 1305828 - g 85 -10.8 -3.05715 | opp_overlap 1305829, overlap 1305855 1305858 AACCGGTGGATTCAA TGCTTTTATCCCTTTA GTTTGG CAAAGGGATAAAAGCT TTATACAAACTGATA TERM 1345 1305829 - 1305864 + G 100 -13.6 -3.87075 | gap 1, opp_overlap 1305828 1305855 1305858 ACCGGTGGATTCAAT GCTTTTATCCCTTTAGT TTG GC-AAAGGGATAAAAGC TTTATACAAACTGAT Cj1368 1305112 - 1306176 + | hypothetical protein TERM 1346 1306204 - 1306187 - g 81 -4.9 -5.38249 | ACTAAGGAGAAAAAA TGAGCTT TTTT AAACTCA AAGAAAACAATACGA Cj1369 1306186 - 1307505 + | putative permease Cj1370 1307519 - 1307962 + | putative nucleotide phosphoribosyltransferase TERM 1347 1308235 - 1308269 + G 71 -6.7 -3.96705 | gap 2, opp_overlap 1308235 GAATTTATAAGATTA GGGGCAAG-AAATT-TC TTT GATAATTTACTTGCTCC TTTGCGTTTTGTAAG Cj1371 1308007 - 1308705 + | putative periplasmic protein (VacJ homolog) Cj1372 1308715 - 1309284 + | putative periplasmic protein TERM 1348 1311161 - 1311147 - g 72 -4.2 -5.08169 | opp_overlap 1311149, overlap 1311149 ATAGATCTTAAAAAA CAGCTC AAC GAGCTT GTAAAAAATGATGGA TERM 1349 1311159 - 1311149 - g 72 -6.8 -4.16351 | opp_overlap 1311149, overlap 1311147 AGATCTTAAAAAACA GCTC AAC GAGC TTGTAAAAAATGATG Cj1373 1309284 - 1311755 + | putative ntegral membrane protein Cj1374c 1312388 - 1311786 - | conserved hypothetical protein Cj1374c TERM 1350 1311926 - 1311914 - G 72 -4.1 -5.06414 | overlap 1311899 CCTTTGGAATAAAAA GGCTA TCA TAACC AAAACCATTTTCACC TERM 1351 1313135 - 1313115 - g 70 -5.6 -4.29396 | opp_overlap 1313113 1313115, overlap 1313106 AATCACTCATGAAAA TGAAAAAA CTCCT TTTTTTCA TCTTATTAAACAAAA Cj1375 1312555 - 1313850 + | putative multidrug efflux transporter Cj1376 1313847 - 1314656 + | putative periplasmic protein Cj1377c 1316310 - 1314649 - | putative ferredoxin TERM 1352 1316180 - 1316193 + g 71 -3.1 -5.2197 | AAATTAATCTCAGGG GCATA AATT TGTGC TTTTTGATTTTTATC selA 1316388 - 1317710 + | selenocysteine synthase TERM 1353 1318018 - 1318034 + G 74 -6.7 -4.3534 | AATTTTAAAAATTCT TGATATT AAA AATATCA TTTTAGTGCTTAGCA TERM 1354 1319388 - 1319377 - g 71 -3 -5.19261 | AAATTTATTAAAAAA TCAA AGTC TTGA TGTGCAAAGTATGAA selB 1317707 - 1319512 + | putative selenocysteine-specific elongation factor TERM 1355 1319902 - 1319887 - g 71 -3.3 -5.28826 | AAATTTTACAAAAAA TGCTA AAGCTG TAGCA CAAAAAGAAACCATG Cj1380 1319561 - 1320271 + | putative periplasmic protein TERM 1356 1320715 - 1320704 - g 72 -4.4 -5.06103 | ACAATTCTCAAAAAA CAAG TCTT CTTG CAAGAACAGCTTATC Cj1381 1320277 - 1320807 + | putative lipoprotein TERM 1357 1320839 - 1320818 - T 75 -7.4 -4.0865 | opp_overlap 1320818, overlap 1320813 TTTAAGAAAAGACAA TCAAGAGT ATAAAA ACTCTTGA TTTTAAGAATTATTA TERM 1358 1320818 - 1320839 + T 75 -7.4 -4.16921 | opp_overlap 1320818 1320813 TTTAAGAAAAGACAA TCAAGAGT ATAAAA ACTCTTGA TTTTAAGAATTATTA fldA 1321343 - 1320852 - | flavodoxin FldA Cj1383c 1322038 - 1321343 - | hypothetical protein Cj1384c 1322355 - 1322041 - | hypothetical protein TERM 1359 1322976 - 1322962 - g 72 -4.2 -5.1287 | TCCATACTCAAAAAA GAGATC CAA GAACTC ATCTAAGAAGTAATA TERM 1360 1323330 - 1323340 + G 70 -5.4 -4.54727 | GATATAGAAAAACTT GGAT TTA ATCC TTTTGATTTAACAAA katA 1322526 - 1323950 + | catalase TERM 1361 1323987 - 1323948 - f 74 -5.3 -4.86033 | gap 1, opp_overlap 1323951, overlap 1323952 AAAGCTTTAGAAAAA TAATTTTTA-CTTGCCAC TTTTG GTGGCAAACTAAAGATTA TAATAATTAAGGAAA Cj1386 1324007 - 1324477 + | ankyrin-repeat containing protein TERM 1362 1324454 - 1324477 + T 70 -5.5 -4.68528 | opp_overlap 1324452 1324454 ATAAGCCTAAAAATA CTAAAATTT ATCAAA AAATTTTAG TTATTTTTTAAATTT Cj1387c 1325134 - 1324478 - | helix-turn-helix containing protein TERM 1363 1325170 - 1325156 - H 78 -4.4 -5.4505 | opp_overlap 1325156 GCCTTCAATAAAAAA TTAATA TAA TATTAA ATTCTACTCTTTATA Cj1388 1325302 - 1325664 + | putative endoribonuclease L-PSP TERM 1364 1326934 - 1326920 - f 70 -7.2 -3.60098 | ACTTTGGAGTTGAAA CTATCA CCA TGATAG CACCAATTCAAATCA metC' 1327120 - 1327257 + | putative cystathionine beta-lyase, N-terminus metC' 1327236 - 1328282 + | putative cystathionine beta-lyase TERM 1365 1328339 - 1328361 + G 88 -7.7 -5.00616 | overlap 1328341 ACTAGCAGACTCATG GAGCACGCA GGAAA TGCGTGCTA TTTTTTGCGAACAAA TERM 1366 1328341 - 1328359 + G 95 -10.3 -4.13561 | overlap 1328339 TAGCAGACTCATGGA GCACGCA GGAAA TGCGTGC TATTTTTTGCGAACA TERM 1367 1329200 - 1329188 - g 71 -7.7 -3.43338 | opp_overlap 1329187 1329197 AGTTACAGTAAGCAA TGCCT TTA AGGCA AATTTAGCCATTTTA Cj1394 1328292 - 1329659 + | adenylosuccinate lyase TERM 1368 1329868 - 1329853 - f 86 -4.7 -5.75478 | AAGCACAGAAAAAAA TACCC CTGTAT GGGTA CATGATAAAAAATTA TERM 1369 1330788 - 1330770 - f 78 -3.1 -5.64274 | TCAGTTACAAAAAAA GGAAATC TCAAG GCTTTCC AAAATATTTTCCAGG TERM 1370 1330917 - 1330904 - f 70 -5.3 -4.56133 | TTTGAAGAATTAAAA GCTAA ATTT TTAGC CAATGCACAAATTTA TERM 1371 1330984 - 1330959 - f 79 -6.3 -4.75309 | CTAAAGCTAACAAAA TTCTAGATCAA ATCA TCAATCTAGAA AATTTAAACCACTTT TERM 1372 1331013 - 1331039 + F 95 -11.1 -3.95042 | opp_overlap 1331012 1331010 1331013 1331037 TTTCTTTTTAAATAT TTATCCTTCTT TTTAC AAGAAGGATAA TTTCATTACACTTTT TERM 1373 1331039 - 1331013 - f 83 -11.1 -2.60496 | opp_overlap 1331013, overlap 1331012 1331010 1331037 TTTCTTTTTAAATAT TTATCCTTCTT TTTAC AAGAAGGATAA TTTCATTACACTTTT Cj1397 1331090 - 1331314 + | putative ferrous iron transport protein TERM 1374 1331558 - 1331525 - g 76 -2.7 -5.64873 | gap 1, opp_overlap 1331531 GCGAAGAAGAAAAAA TCACACGTCATTTT TTAAATC AAAATGAC-TATGA TGTTATTGTTAATGT TERM 1375 1332593 - 1332605 + G 77 -7.7 -4.18782 | overlap 1332595 TGCCAAAATATCGTA TGCCA AAT TGGCA TTTAGTTTGGTTTAT feoB 1331311 - 1333152 + | ferrous iron transport protein hydA2 1334642 - 1333149 - | putative Ni/Fe-hydrogenase small subunit fabI 1335470 - 1334646 - | enoyl-(acyl carrier protein) reductase tpiA 1336145 - 1335474 - | triosephosphate isomerase pgk 1337344 - 1336142 - | phosphoglycerate kinase TERM 1376 1336569 - 1336587 + g 80 -6.8 -4.74539 | opp_overlap 1336569 ATTTTCACTCCTAAA TTTTTACC CTT GGTAAGAA TTTTATTAGCTTCTT gapA 1338345 - 1337347 - | glyceraldehyde 3-phosphate dehydrogenase nadD 1338404 - 1338949 + | putative nicotinate-nucleotide adenylyltransferase Cj1405 1338977 - 1339303 + | conserved hypothetical protein Cj1405 TERM 1377 1339300 - 1339331 + T 90 -8.3 -4.63542 | TAAAAAAGGTAGGGT TTAAAAAGGCTAA AATTTA TTAGTCTTTTTAA TTTTTAGAGATTATC Cj1406c 1339712 - 1339362 - | putative periplasmic protein Cj1407c 1341147 - 1339759 - | putative phospho-sugar mutase fliL 1341250 - 1341786 + | flagellar basal body-associated protein FliL TERM 1378 1341850 - 1341808 - g 82 -10.9 -2.62396 | gap 1, opp_overlap 1341795 1341807 1341805 TAGGCTGTGATATCA TCGCCATTTCTAGAATAGAA AAAA TTC-ATTCTAGACATGGCAA AAATTTTTTGGATAA acpS 1341786 - 1342133 + | 4'-phosphopantetheinyl transferase TERM 1379 1342108 - 1342128 + T 93 -10.5 -4.21737 | ATGATAATGGTTTTG CTATAGCCA TAG TGGCTGTAG TTTGATTATTTTCCT Cj1410c 1342553 - 1342134 - | hypothetical protein Cj1411c 1343911 - 1342550 - | putative cytochrome P450 TERM 1380 1343866 - 1343834 - G 73 -8.7 -3.14878 | gap 1, opp_overlap 1343833 CCCGTCAAGCCAAGA TCTACGCT-TTAAC AAAAAA GTTAAAAGCGTAGA AGCTTTATTTTTATA Cj1412c 1345029 - 1343908 - | putative integral membrane protein TERM 1381 1344583 - 1344572 - G 72 -4.4 -5.16472 | AAAAATCCTAAAAAA CATC CTAT GATG ATAGCTAAAGAAAAA TERM 1382 1344871 - 1344902 + g 74 -6.1 -4.43477 | opp_overlap 1344871 1344870 TCCTTCGCAAGAAAT TTGAAAAAAAGGA AATTGC TCATTTTTTTCAA TTTTACTTAAATCAG kpsS 1346286 - 1345102 - | capsule polysaccharide modification protein kpsC 1348352 - 1346283 - | capsule polysaccharide modification protein TERM 1383 1347318 - 1347308 - G 76 -2.6 -5.57054 | opp_overlap 1347308 AAGAATTTAAAAAAA TAAT TTC ATTA TCTTTAGCCTTAAAA cysC 1348861 - 1348349 - | adenylylsulfate kinase Cj1416c 1349612 - 1348851 - | putative sugar nucleotidyltransferase TERM 1384 1349533 - 1349553 + g 71 -6.9 -3.93367 | overlap 1349548 TTTTTATTCTTATAC TCAACCATA CAC TTTGGTTGA TCTTTTGTTAAAGGC Cj1417c 1350216 - 1349614 - | putative amidotransferase Cj1418c 1352546 - 1350207 - | hypothetical protein TERM 1385 1350536 - 1350526 - G 70 -4 -4.93296 | CTATGATTATAAAAA GAAA AAA TTTC ATCAGCATTACAAAG TERM 1386 1350867 - 1350906 + g 87 -11 -3.25102 | opp_overlap 1350862 1350871 1350903, overlap 1350851 1350871 TTTAAGTAAAGCATT TAAAGCTCTTGTCTTTTC TTTT GAAAAAACAAAAGCTTTA TCTTGTAAATAAACT TERM 1387 1350871 - 1350902 + g 77 -7.4 -4.28188 | opp_overlap 1350862 1350871, overlap 1350867 AGTAAAGCATTTAAA GCTCTTGTCTTTTC TTTT GAAAAAACAAAAGC TTTATCTTGTAAATA TERM 1388 1350902 - 1350871 - G 95 -11.8 -3.74626 | opp_overlap 1350871 1350867, overlap 1350862 AGTAAAGCATTTAAA GCTCTTGTCTTTTC TTTT GAAAAAACAAAAGC TTTATCTTGTAAATA TERM 1389 1351914 - 1351858 - G 72 -6.7 -4.12901 | opp_overlap 1351857 TAAAATCTATATAAA GCTTCTTTTGGTAAAGAATGAAATAAA TTA TTTTTTTCATGCATAACCAAAGGACGC ACTTGTAAGCAAAAA TERM 1390 1352462 - 1352480 + g 80 -2.4 -5.81622 | opp_overlap 1352463, overlap 1352463 CAAGCGAAGTTAAAA CCAAAGGT AGA ACTTTTGC TTTTTTTAATTTTGT Cj1419c 1353322 - 1352561 - | putative methyltransferase TERM 1391 1353325 - 1353372 + r 81 -7.4 -4.70046 | CTAGTTTTTGCATTT TATTTCCTTTTTTTCATC TTTGACAAGCTT GATGAAAAAAAGGAGGTA TTTTATGCTTTTCTA Cj1420c 1354148 - 1353375 - | putative methyltransferase TERM 1392 1354024 - 1354038 + g 88 -4.4 -5.69262 | opp_overlap 1354024 CCTACTTCAACAATA TTTAAA TCT TTTAAA TTTTTATTTTTATCA Cj1421c 1356053 - 1354215 - | putative sugar transferase Cj1422c 1357985 - 1356108 - | putative sugar transferase hddC 1358701 - 1358036 - | putative D-glycero-D-manno-heptose 1-phosphate guanosyltransferase TERM 1393 1358209 - 1358191 - G 72 -4.7 -4.86773 | opp_overlap 1358193 CAAAATCATTAAAAA TATCTTT AGTTA AAAGATA AATTCCACCATTGAT gmhA2 1359294 - 1358689 - | phosphoheptose isomerase hddA 1360301 - 1359282 - | putative D-glycero-D-manno-heptose 7-phosphate kinase Cj1426c 1361172 - 1360321 - | putative methyltransferase family protein Cj1427c 1362132 - 1361191 - | putative sugar-nucleotide epimerase/dehydratease fcl 1363196 - 1362156 - | GDP-L-fucose synthetase Cj1429c 1364122 - 1363196 - | hypothetical protein TERM 1394 1363388 - 1363369 - G 81 -3.6 -5.55769 | opp_overlap 1363369 CTTGAGAATAAAAAA TTTTCCCA TGGT TGTGAAAA TGTGTATGCATTGGA rfbC 1364671 - 1364126 - | putative dTDP-4-dehydrorhamnose 3,5-epimerase hddC 1366419 - 1364671 - | capsular polysaccharide heptosyltransferase TERM 1395 1364979 - 1364989 + g 70 -4 -5.00884 | opp_overlap 1364979 GTTTATAAGCTAAAT GATT ACG AATC TTTTTTACAGCACCT TERM 1396 1365955 - 1365965 + g 72 -2.6 -5.44119 | AAATTTACTATGAGC TTTT TCA AAAA TTTTTTTAACATGAG TERM 1397 1366358 - 1366341 - G 81 -8.5 -4.17296 | opp_overlap 1366338 1366341 1366343 TTTTAGATATATAAA GAGCATT TAAT AATGCTC TCATTCTCTCTCCAA Cj1432c 1369517 - 1366422 - | putative sugar transferase Cj1433c 1370633 - 1369527 - | hypothetical protein TERM 1398 1370557 - 1370572 + g 77 -4.8 -5.28683 | TCTATCTTTGTATTA TTAAGA TCTA TCTTAA TTTTTTCATGTTGCT TERM 1399 1370576 - 1370592 + g 73 -3.7 -5.31275 | GATCTATCTTAATTT TTTCATG TTG CTTGAAA TTTTTTATGATAGAC Cj1434c 1372004 - 1370667 - | putative sugar transferase TERM 1400 1370927 - 1370885 - G 90 -9.6 -3.97602 | gap 2, overlap 1370886 1370899 CAATAGACCTATAAA CTTTATGCTCAAAATTATGC TCAAG GCA-AATTTTGAGCAT-AAG AAAAGGTAATTTAAT TERM 1401 1370927 - 1370886 - G 77 -9.8 -2.97838 | gap 1, overlap 1370885 1370899 AATAGACCTATAAAC TTTATGCTCAAAATTATGC TCAAG GCA-AATTTTGAGCATAAG AAAAGGTAATTTAAT TERM 1402 1370926 - 1370899 - G 75 -7.2 -4.11394 | overlap 1370885 1370886 ACTTTATGCTCAAAA TTATGCTCAA GGCAAATT TTGAGCATAA GAAAAGGTAATTTAA TERM 1403 1371483 - 1371514 + g 100 -17.6 -3.05596 | opp_overlap 1371487 1371503, overlap 1371487 TTGATTTGTTCTTAA TAAATCCAATCGGT AAAT ACCGATTGGATTTA TTCCATCCGAACCTA TERM 1404 1371510 - 1371487 - G 100 -14 -4.15044 | opp_overlap 1371487 1371483, overlap 1371503 TTTGTTCTTAATAAA TCCAATCGGT AAAT ACCGATTGGA TTTATTCCATCCGAA TERM 1405 1371487 - 1371510 + g 100 -14 -4.20516 | opp_overlap 1371487 1371503, overlap 1371483 TTTGTTCTTAATAAA TCCAATCGGT AAAT ACCGATTGGA TTTATTCCATCCGAA Cj1435c 1372691 - 1372056 - | putative phosphatase Cj1436c 1373867 - 1372695 - | aminotransferase TERM 1406 1372886 - 1372874 - G 70 -5.5 -4.2231 | AACTACCATCCAAAA GCTCC ACA AGAGC AAAATTAGCCATACT TERM 1407 1373922 - 1373940 + r 72 -4.5 -5.03145 | opp_overlap 1373922 TATAATTGCATCAAA CAAGGTG AAAAC CTCCTTG TTTTTTAGCAAATTC Cj1437c 1375020 - 1373917 - | aminotransferase Cj1438c 1377337 - 1375007 - | putative sugar transferase TERM 1408 1375491 - 1375501 + g 89 -4 -5.88061 | ACACTATAATAATTC CATT CCA AATG TTTTTTTAATTTTTT TERM 1409 1375627 - 1375614 - G 70 -3.9 -5.07652 | GTTTTTAAAACAAAA GAATT AGGT AATTC GTTGAAATTAATATC TERM 1410 1375722 - 1375744 + g 76 -5 -5.02715 | opp_overlap 1375731 TTATCTTGTAAATCG TCTATATTAT TAA ATAAAATAGA TTTTTCATTTAATAT TERM 1411 1376825 - 1376856 + g 100 -17.6 -2.92667 | opp_overlap 1376829, overlap 1376829 TTGATTTGTTCTTAA TAAATCCAATCGGT AAAT ACCGATTGGATTTA TGCTTTGAAAATTAA TERM 1412 1376829 - 1376852 + g 100 -14 -4.13654 | opp_overlap 1376829, overlap 1376825 TTTGTTCTTAATAAA TCCAATCGGT AAAT ACCGATTGGA TTTATGCTTTGAAAA TERM 1413 1376852 - 1376829 - G 100 -14 -4.15044 | opp_overlap 1376829 1376825 TTTGTTCTTAATAAA TCCAATCGGT AAAT ACCGATTGGA TTTATGCTTTGAAAA glf 1378445 - 1377339 - | UDP-galactopyranose mutase TERM 1414 1378051 - 1378071 + g 78 -9.1 -3.23541 | overlap 1378049 AAAGATATAGCTTGT TCTTCCAAA TTT TTTGGAGGA TGTTGAATTATTTGT Cj1440c 1379706 - 1378483 - | putative sugar transferase TERM 1415 1378549 - 1378521 - G 90 -10.7 -3.63073 | TATATTTTTTAATAA TATTTATTTTAAA AAT TTTAAAATAAATA AAAGCTCCATAAAAA TERM 1416 1379594 - 1379614 + g 100 -9.9 -4.94992 | opp_overlap 1379602, overlap 1379607 TCTGTACTACCATCA TTTACAAGT ACA ACTTGTAAA TTTTTATAAGTTTGA kfiD 1380897 - 1379716 - | UDP-glucose 6-dehydrogenase TERM 1417 1379994 - 1380006 + g 85 -2.7 -5.94713 | TTAATCTATAAATAC CTAAA ATG TTTGG TTTTTTTTCTAAAAT Cj1442c 1382528 - 1380894 - | putative sugar transferase TERM 1418 1381125 - 1381135 + g 91 -5.4 -5.72622 | TTTATCATGTTTTTG TGCT ATC AGCA TTTTTTCTTTATCAA TERM 1419 1382024 - 1382052 + g 71 -3.1 -5.22312 | opp_overlap 1382026, overlap 1382026 CAATACTTGAAGTAG AACTTGGGGCAAA AAA TTTTACCCAAGTA TTTTTTGCTGTAAAT TERM 1420 1382026 - 1382050 + g 70 -5.7 -4.23988 | opp_overlap 1382026, overlap 1382024 ATACTTGAAGTAGAA CTTGGGGCAAA AAA TTTTACCCAAG TATTTTTTGCTGTAA kpsF 1383475 - 1382528 - | D-arabinose 5-phosphate isomerase kpsD 1385144 - 1383486 - | capsule polysaccharide export system periplasmic protein TERM 1421 1383776 - 1383748 - G 78 -6.7 -4.62984 | TTATCATACACAAAA GCTCCAGGTAAAG AAA CCTCACCTTGAAC TATGATGAGATTATT kpsE 1386264 - 1385146 - | capsule polysaccharide export system inner membrane protein TERM 1422 1385348 - 1385358 + g 70 -5.4 -4.56775 | opp_overlap 1385336 TAAGCTTTTAAAGCT GCTT CAT AAGC TTTTTGCGCAAAAGT kpsT 1386926 - 1386264 - | capsule polysaccharide export ATP-binding protein TERM 1423 1386470 - 1386448 - G 77 -7.7 -4.07568 | opp_overlap 1386448 CTTTTTTCCCTAAAA GCAGGATCT CCAAC AGCTCCTGC TTCATCAATCAAATA kpsM 1387705 - 1386923 - | capsule polysaccharide export system inner membrane protein TERM 1424 1387069 - 1387059 - G 72 -2.6 -5.43866 | overlap 1387044 TAATTTTCAAAAAAA TTAA ATC TTAA AAGTTCAAAAATATG TERM 1425 1387507 - 1387497 - G 95 -6.8 -5.88197 | CTAAACATAAAAAAA GGCA TAA TGCC TGAAATCAAAAACAT Cj1449c 1388184 - 1387777 - | hypothetical protein TERM 1426 1388727 - 1388715 - g 71 -3.4 -5.27399 | opp_overlap 1388715 GAAGATAGCAAAAAA CTTC TTGAT GAAG TTTTAGAACAAATGA Cj1450 1388259 - 1388822 + | putative ATP/GTP-binding protein dut 1388859 - 1389548 + | dUTPase TERM 1427 1389895 - 1389877 - g 74 -5.4 -4.95957 | GAAATCAACCAAAAA TATTACCA TTA TGATAATA CAAACGAAGTTTCAA Cj1452 1389550 - 1390263 + | putative integral membrane protein tilS 1391211 - 1390246 - | putative tRNA(Ile)-lysidine synthase TERM 1428 1390743 - 1390730 - G 74 -5.3 -5.00616 | opp_overlap 1390730, overlap 1390712 TTTTCTTTTAAAAAA GATGA AATT TCATC TTTACTTATAAAGAG TERM 1429 1390959 - 1390977 + g 77 -9 -3.55815 | AATCTCTGGCTTTTT TTTCAAAG TTA CTTTGAAA TTTAGGAGCGTGTTT TERM 1430 1390990 - 1391000 + g 76 -2.6 -5.63504 | AAATTTAGGAGCGTG TTTT ATG AAAA TTTTTTTATGAAATT TERM 1431 1391193 - 1391165 - G 77 -8.3 -3.85891 | opp_overlap 1391158 1391166, overlap 1391166 GAAAAAGCGAGTAAA TTTTTACCCCTTT TTA AAAGGGATAAAAT TTCATCTTTAATTTG TERM 1432 1391166 - 1391192 + g 91 -9.6 -4.05229 | opp_overlap 1391166 1391165, overlap 1391158 AAAAAGCGAGTAAAT TTTTACCCCTTT TTA AAAGGGATAAAA TTTCATCTTTAATTT TERM 1433 1391192 - 1391166 - G 90 -11.8 -2.9045 | opp_overlap 1391158 1391166, overlap 1391165 AAAAAGCGAGTAAAT TTTTACCCCTTT TTA AAAGGGATAAAA TTTCATCTTTAATTT Cj1454c 1392520 - 1391201 - | putative radical SAM domain family protein TERM 1434 1392164 - 1392183 + g 74 -2.2 -5.50499 | ACTTTGCAAATAAGT CGAATTTG AAAA TAAATTTG TTTTTTTAAGTATCA prfB 1392594 - 1393691 + | peptide chain release factor 2 TERM 1435 1393746 - 1393766 + T 74 -5.3 -4.90381 | opp_overlap 1393745 1393747 1393749, overlap 1393749 AAAAAAATTAGAAAG ATAGCGGGA TTT TCCCGCTTG TTTTATTATCTTGCA TERM 1436 1393765 - 1393747 - T 81 -8.8 -3.73262 | opp_overlap 1393746 1393749, overlap 1393745 1393749 AAAAAATTAGAAAGA TAGCGGGA TTT TCCCGCTT GTTTTATTATCTTGC TERM 1437 1393763 - 1393749 - T 87 -11.4 -3.40925 | opp_overlap 1393749 1393746, overlap 1393747 1393745 AAAATTAGAAAGATA GCGGGA TTT TCCCGC TTGTTTTATTATCTT TERM 1438 1393749 - 1393763 + T 95 -11.4 -4.53142 | opp_overlap 1393747 1393745 1393749, overlap 1393746 AAAATTAGAAAGATA GCGGGA TTT TCCCGC TTGTTTTATTATCTT Cj1456c 1394163 - 1393849 - | putative periplasmic protein truD 1395403 - 1394285 - | tRNA pseudouridine synthase D TERM 1439 1394842 - 1394856 + gr 70 -7.2 -3.56366 | TTACATTTTTCATCT TTTTGC CAC GCAAAA TTTCAAGCCCTTCTT thiL 1396193 - 1395372 - | thiamine monophosphate kinase TERM 1440 1396262 - 1396246 - H 74 -5.3 -4.87786 | opp_overlap 1396246 TGAATTTTAGAAAAA TTTTATA TAA TATAAAA ATATTTAAGGAAAAA Cj1459 1396280 - 1397353 + | hypothetical protein Cj1460 1397350 - 1397733 + | hypothetical protein TERM 1441 1397792 - 1397778 - g 73 -3.6 -5.33848 | ATCACAATGAAAAAA GAAAAA AAT TTCTTC AAAAACAAGAAATTA Cj1461 1397726 - 1398409 + | putative DNA methylase flgI 1398468 - 1399514 + | flagellar basal body P-ring protein TERM 1442 1399669 - 1399681 + G 88 -4.1 -5.75342 | opp_overlap 1399649, overlap 1399649 AAAAGAACAAACCAA TGCTT TTG AGGCA TTTTTTTTAAAGCAA flgJ 1399514 - 1399855 + | hypothetical protein flgM 1399918 - 1400115 + | hypothetical protein Cj1465 1400158 - 1400592 + | hypothetical protein TERM 1443 1402163 - 1402122 - g 70 -9 -2.58887 | overlap 1402121 1402126 GGCAAATAAAATCAT CCAACTTCAATATAAAAA AGTTAA TTTTTATAATGAAGATGG CACTATCGATAATCT flgK 1400602 - 1402428 + | flagellar hook-associated protein FlgK TERM 1444 1402411 - 1402435 + F 88 -12.3 -2.63596 | opp_overlap 1402398, overlap 1402416 ATGCTTGATACCTTA CTAGGGCTTAA ATC TTAAGCTCTAG TAATATCAAATGAAA TERM 1445 1402859 - 1402881 + G 88 -5.7 -5.63517 | opp_overlap 1402852 1402859 ATCAAAACCTTAAAT TCATATTCA AGTTA TGGATATGA TTTTTTCTTTGGAAA Cj1467 1402445 - 1403209 + | hypothetical protein TERM 1446 1403377 - 1403391 + G 83 -8.6 -4.18506 | opp_overlap 1403376 1403377 AGCAACAAACAAACT CCAAAG CGT CTTTGG TTCTTTTACGGCTAC TERM 1447 1403391 - 1403377 - g 70 -8.6 -2.63784 | opp_overlap 1403377, overlap 1403376 AGCAACAAACAAACT CCAAAG CGT CTTTGG TTCTTTTACGGCTAC Cj1468 1403213 - 1403977 + | putative integral membrane protein ctsE 1406706 - 1405147 - | putative type II protein secretion system E protein TERM 1448 1406257 - 1406246 - G 74 -3 -5.4833 | opp_overlap 1406255 TCATGTAATAAAAAA TCAA AAAT TTGA CTGATGCAACTTTGG TERM 1449 1406381 - 1406399 + g 70 -3.8 -5.02074 | GCTATCTTTAATTCA TCGGCAAT TGC AGTGTCGA TTTTTTCACAAATCA Cj1472c 1407283 - 1406696 - | hypothetical protein TERM 1450 1406805 - 1406815 + g 74 -5.4 -4.93365 | TGAGCAAAAATCAGC CAAG AAT CTTG TTTTTGCTTGTCAAG ctsP 1407895 - 1407287 - | putative ATP/GTP-binding protein ctsD 1409306 - 1407888 - | putative type II protein secretion system D protein TERM 1451 1408918 - 1408931 + gr 81 -8.1 -4.05902 | overlap 1408922 CTTTGCCTTGGTTTA GCGTC TACA GACGC TTTAGTTATGCTTTG ctsR 1409595 - 1409278 - | hypothetical protein Cj1476c 1413179 - 1409619 - | pyruvate-flavodoxin oxidoreductase TERM 1452 1409678 - 1409690 + g 88 -5.5 -5.5074 | TAAGCTGTCTATAGC GACGT TGA GCGTC TTTTTTATTGCGTTC TERM 1453 1413137 - 1413121 - G 100 -10.9 -4.28361 | overlap 1413126 GCAACTTCAGTAAAA GCATACG CAG CGTATGC AGCAGCCTCATTTCC Cj1477c 1413913 - 1413272 - | putative hydrolase TERM 1454 1413424 - 1413440 + g 72 -5.1 -4.77719 | overlap 1413425 TATCTAATATTGTAT CGCCTAT CAT ATAGGCA TTTTCTTGAGTTTTA TERM 1455 1413425 - 1413439 + g 76 -8.6 -3.45005 | overlap 1413424 ATCTAATATTGTATC GCCTAT CAT ATAGGC ATTTTCTTGAGTTTT TERM 1456 1413843 - 1413818 - G 93 -11.3 -3.23452 | gap 1, opp_overlap 1413814 1413825 ATTTTTAGAAGTTAA TCCAAGG-GCTT TAA AAGCTCCTTGGA AAGAATTTAAAATAG cadF 1414872 - 1413913 - | outer membrane fibronectin-binding protein TERM 1457 1414989 - 1414973 - R 100 -12.3 -3.99917 | AAAAAATTGTAGAAA GGTGGGA AAA TCCCACC AAAAATATTAACGTT rpsI 1415386 - 1414997 - | 30S ribosomal protein S9 rplM 1415814 - 1415389 - | 50S ribosomal protein L13 TERM 1458 1415900 - 1415860 - R 75 -4.3 -5.26316 | opp_overlap 1415864 1415865, overlap 1415865 1415869 TGATTGTATAAAAAA TAATATTAATTTTTACTTA ATT TAAGTAAAAATAAAGTTTA TATTTCCAAAATTTG TERM 1459 1415895 - 1415865 - R 82 -8.6 -3.96386 | opp_overlap 1415864 1415865, overlap 1415860 1415869 GTATAAAAAATAATA TTAATTTTTACTTA ATT TAAGTAAAAATAAA GTTTATATTTCCAAA TERM 1460 1415865 - 1415895 + r 73 -8.6 -3.19232 | opp_overlap 1415865 1415860 1415869, overlap 1415864 GTATAAAAAATAATA TTAATTTTTACTTA ATT TAAGTAAAAATAAA GTTTATATTTCCAAA TERM 1461 1415891 - 1415869 - R 82 -9.4 -3.57601 | opp_overlap 1415865 1415864, overlap 1415865 1415860 AAAAAATAATATTAA TTTTTACTTA ATT TAAGTAAAAA TAAAGTTTATATTTC Cj1481c 1418663 - 1415898 - | putative helicase TERM 1462 1417295 - 1417305 + g 72 -5.4 -4.78572 | TAATTTCTTGGGCTT GGTT TTT AACC TTTTGTTCCTTAGAC Cj1482c 1421026 - 1418660 - | hypothetical protein TERM 1463 1420317 - 1420328 + g 83 -3 -5.79595 | overlap 1420326 TCAAAAGATTTGAGT TTCA TTTT TGAA TTTTTTGTTTTAAAA Cj1483c 1421544 - 1421023 - | putative lipoprotein Cj1484c 1422133 - 1421531 - | hypothetical protein TERM 1464 1421786 - 1421774 - G 71 -7.7 -3.40622 | overlap 1421772 TATCGGCAAAATAGA TCCTG TTC CAGGA TAAGGACTAAGCACA Cj1485c 1422231 - 1422130 - | putative periplasmic protein Cj1486c 1422449 - 1422228 - | putative periplasmic protein ccoP 1423309 - 1422446 - | cb-type cytochrome C oxidase subunit III TERM 1465 1422959 - 1422977 + g 74 -5.4 -4.93595 | TTGACCCATTGCTAT TTTATCTT CAG GAGATAAA TTTTTAAATTTTTCT ccoQ 1423572 - 1423309 - | cb-type cytochrome C oxidase subunit IV TERM 1466 1423546 - 1423525 - G 83 -8.9 -4.05788 | overlap 1423535 TGTTGCTAAATCAAA TGTGATTAA ATTT TTAATCACA TCAAAAACTATTGAT ccoO 1424242 - 1423577 - | cb-type cytochrome C oxidase subunit II ccoN 1425721 - 1424255 - | cb-type cytochrome C oxidase subunit I TERM 1467 1425542 - 1425526 - G 70 -3.7 -5.1417 | GCATAAAACCAAAAA TCACACC TGA AGTATGA AGTGGTCTAAGTCTT TERM 1468 1425634 - 1425615 - G 75 -7.2 -4.14243 | TATGCCATTTGAAAA GCTATAAG AGTT CCTATAGC CATACCAACAATGCC Cj1491c 1426527 - 1425847 - | putative two-component regulator Cj1492c 1427741 - 1426530 - | putative two-component sensor TERM 1469 1427677 - 1427708 + g 100 -13.3 -3.54741 | opp_overlap 1427674 1427677 TTTCCTTGAACATCA GCTCTTGAAAAAA TTGTAT TTTTTTCAAGAGC TTTAAAAAACTGATC TERM 1470 1427708 - 1427677 - G 100 -13.3 -2.73875 | opp_overlap 1427677, overlap 1427674 TTTCCTTGAACATCA GCTCTTGAAAAAA TTGTAT TTTTTTCAAGAGC TTTAAAAAACTGATC Cj1493c 1428397 - 1427738 - | putative integral membrane protein carA 1429512 - 1428394 - | carbamoyl phosphate synthase small subunit TERM 1471 1428591 - 1428605 + g 77 -5.7 -4.9725 | AATTATGATTTTGTG CGGTA ATTTC TACCG TTTTTGTATCAAGAT Cj1495c 1430063 - 1429512 - | conserved hypothetical protein Cj1495c TERM 1472 1429582 - 1429592 + g 71 -3.2 -5.22137 | TCGTATTCTTCGCTA CCTG GAA TAGG TTTTGTTTTATAATT Cj1496c 1430674 - 1430156 - | putative periplasmic protein Cj1497c 1431095 - 1430667 - | hypothetical protein TERM 1473 1430981 - 1430959 - G 74 -8.5 -3.6106 | opp_overlap 1430959 GGCAATACGCCTAAA CTTTCACAC TCTTG GCGTGAAAG TTCATAAGCTTTTTC purA 1432342 - 1431092 - | adenylosuccinate synthetase TERM 1474 1431379 - 1431361 - G 74 -8.2 -3.5485 | overlap 1431357 CATCTAAAACATCAA GCTTCATC AAA GATAAAGC ATCAAGACCATTAAG TERM 1475 1433491 - 1433515 + G 72 -2.7 -5.43974 | overlap 1433493 CAAACTCATAGAACT TTCTCCTGCTG TAG CTGTGGGAGCA TTTTTGTTTGGTTTT Cj1500 1432607 - 1433815 + | putative inner membrane protein TERM 1476 1433948 - 1433925 - g 70 -9 -2.64194 | opp_overlap 1433925, overlap 1433924 1433927 GAGAAATTTTAGAAG TACTTTGTGA TTGT CCACAAAGTA TCAATTCCATACCTC Cj1501 1433819 - 1434046 + | hypothetical protein TERM 1477 1434040 - 1434053 + T 82 -6.7 -4.77165 | opp_overlap 1434040, overlap 1434035 ATTTTTAATCCAAAA GCCTT AAAA AAGGC TTTTATTCTCAAAAC TERM 1478 1434053 - 1434040 - T 74 -6.7 -4.27584 | opp_overlap 1434035 1434040 ATTTTTAATCCAAAA GCCTT AAAA AAGGC TTTTATTCTCAAAAC putP 1435549 - 1434062 - | putative sodium/proline symporter TERM 1479 1434339 - 1434353 + g 70 -4.3 -4.87665 | opp_overlap 1434337 1434339 GCATAAGAAACTATA CTCAA AACAC TTGAG TTTTTATCAGTAGAA TERM 1480 1434842 - 1434858 + g 70 -5.9 -4.26463 | opp_overlap 1434842 TCCTTCGCCCATAGA TAAAGCT TGT GGCTTTA TTTCTCTTACTATAT putA 1439037 - 1435549 - | putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase selD 1440094 - 1439168 - | putative selenide,water dikinase Cj1505c 1440772 - 1440200 - | putative two-component response regulator (SirA-like protein) TERM 1481 1440552 - 1440563 + g 83 -3 -5.75599 | ATATTTACTTCACTA GAAT CAAA ATTC TTTTTTTGTACTTTG TERM 1482 1440885 - 1440858 - R 80 -4.2 -5.48787 | opp_overlap 1440865, overlap 1440860 1440865 ATAATATAGAAAAAA TTTAAAAGCTCA AAAA TGAGCTTTTTTA AAATCTTTTTTTATT TERM 1483 1440878 - 1440865 - R 76 -6.7 -4.55016 | opp_overlap 1440865, overlap 1440860 1440858 AGAAAAAATTTAAAA GCTCA AAAA TGAGC TTTTTTAAAATCTTT TERM 1484 1440865 - 1440878 + r 90 -6.7 -5.10077 | opp_overlap 1440865 1440860 1440858 AGAAAAAATTTAAAA GCTCA AAAA TGAGC TTTTTTAAAATCTTT Cj1506c 1442985 - 1440883 - | putative MCP-type signal transduction protein TERM 1485 1441192 - 1441210 + g 76 -8.9 -3.53012 | ATGTTCTCCAGCACG TGCAGCT TCAAT AGCTGCA TTTAAAGCAAGAAGA TERM 1486 1441907 - 1441885 - G 70 -4.2 -4.95854 | TAAAAAACGGAAAAA TGATTCTAAA GAA CTAAGAATCA CAGGCAATCTAGATG TERM 1487 1442966 - 1442952 - G 76 -3.6 -5.36441 | overlap 1442957 CTGCCACAGAAAAAA TAAGTT TTA AACCTA TATTTAAAGATTTAA Cj1507c 1443832 - 1443095 - | putative regulatory protein fdhD 1444607 - 1443825 - | formate dehydrogenase accessory protein TERM 1488 1444674 - 1444652 - R 70 -2.1 -5.59357 | ATTATATCAAAAAAA CATAAATAA CAAAT TTATATATG GAAAAATAGATTTTA TERM 1489 1444769 - 1444742 - R 86 -9.2 -4.33739 | opp_overlap 1444767, overlap 1444743 1444745 CAAAAAAGCTTAAAA CTACCGCTATGT AATA ACATAGCGGTTA AAGATTAAATTTTCA TERM 1490 1444768 - 1444743 - R 85 -10.5 -3.18617 | opp_overlap 1444767, overlap 1444742 1444745 AAAAAAGCTTAAAAC TACCGCTATGT AATA ACATAGCGGTT AAAGATTAAATTTTC TERM 1491 1444766 - 1444745 - R 100 -13.1 -3.12962 | overlap 1444743 1444742 AAAAGCTTAAAACTA CCGCTATGT AATA ACATAGCGG TTAAAGATTAAATTT fdhC 1445706 - 1444774 - | putative formate dehydrogenase, cytochrom B subunit fdhB 1446344 - 1445703 - | putative formate dehydrogenase iron-sulfur subunit fdhA 1449145 - 1446341 - | putative formate dehydrogenase large subunit (Selenocysteine containing) Cj1513c 1449336 - 1449145 - | possible periplasmic protein TERM 1492 1449246 - 1449263 + gr 75 -8.5 -3.40403 | CTTTTCTTTCTTCAT CTTTAGC TAGA GCTAAAG TTGTGCTACCAAGCA Cj1514c 1450024 - 1449311 - | hypothetical protein Cj1515c 1451476 - 1450328 - | putative decarboxylase TERM 1493 1450586 - 1450598 + g 71 -4.9 -4.74285 | GCTTTCTTTTAAGTC TGAAA TTT TTTCA TTTTCTCTTGTGGCT TERM 1494 1451794 - 1451780 - g 72 -6.4 -4.23999 | opp_overlap 1451780 TTAGATCCAAAACAA TTCCCC CAA GGAGAA ATTTTAAAAGCCTTG TERM 1495 1452677 - 1452665 - g 85 -2.7 -5.86609 | CTAAAAAAAGAAAAA TTAGA ACT TCCAA AAAATTTAAAAATTT Cj1516 1451600 - 1453141 + | putative periplasmic oxidoreductase moaD 1453143 - 1453364 + | putative molybdopterin converting factor,subunit 1 moaE 1453365 - 1453811 + | putative molybdopterin converting factor,subunit 2 moeA2 1453815 - 1455005 + | putative molybdopterin biosynthesis protein TERM 1496 1455125 - 1455091 - T 73 -8.6 -3.16564 | opp_overlap 1455095 1455119, overlap 1455094 CTTTTAGTGGAGTAA TTAGCCCTAGTGGAGT TTC AATCCACTAGGGTTTA TTTTAGTCCCTTTTT TERM 1497 1455122 - 1455094 - T 79 -10.3 -2.78547 | opp_overlap 1455095 1455119, overlap 1455091 TTAGTGGAGTAATTA GCCCTAGTGGAGT TTC AATCCACTAGGGT TTATTTTAGTCCCTT TERM 1498 1455095 - 1455121 + T 100 -13.8 -4.7261 | opp_overlap 1455094 1455091, overlap 1455119 TAGTGGAGTAATTAG CCCTAGTGGAGT TTC AATCCACTAGGG TTTATTTTAGTCCCT Cj1521c 1456000 - 1455569 - | putative CRISPR-associated protein Cj1522c 1456883 - 1455993 - | putative CRISPR-associated protein Cj1523c 1459834 - 1456880 - | putative CRISPR-associated protein TERM 1499 1456946 - 1456960 + g 71 -5.8 -4.43272 | opp_overlap 1456945, overlap 1456952 AAGTGCTGAAACTAT GTATTT TTC AAATAC TTTTAGATTTTGAAT TERM 1500 1459642 - 1459665 + g 72 -8.2 -3.2362 | overlap 1459646 1459653 GTTTTAAGTGATTTA GCCTTGCT TTGCGTCT AGCAAGGC GTTTTCTAGCACTTC TERM 1501 1459857 - 1459887 + r 85 -5.6 -5.40072 | CCTTTTTAATATTTA TGATTTGTGTATAA TTA TAATACAAAAATCA TTTTTTTAAACAAAC TERM 1502 1460338 - 1460348 + r 77 -5.4 -5.02074 | opp_overlap 1460344 1460345 CATATCAATGCTTCG GCAA AAC TTGC TTTTTTAGCAAATAA TERM 1503 1461506 - 1461475 - R 89 -10.4 -3.76769 | opp_overlap 1461476 1461481 1461485, overlap 1461481 ATAGAACTTAAAATA CAAAAATAAAGCGT ATTA ACGCTTTATTTTCA TTCTAAAACAATACC TERM 1504 1461476 - 1461505 + r 75 -9.5 -2.57564 | opp_overlap 1461475 1461481, overlap 1461481 1461485 TAGAACTTAAAATAC AAAAATAAAGCGT ATTA ACGCTTTATTTTC ATTCTAAAACAATAC TERM 1505 1461500 - 1461481 - R 100 -9.4 -5.28983 | opp_overlap 1461476 1461481 1461485, overlap 1461475 CTTAAAATACAAAAA TAAAGCGT ATTA ACGCTTTA TTTTCATTCTAAAAC TERM 1506 1461481 - 1461500 + r 89 -9.4 -4.48987 | opp_overlap 1461481 1461475, overlap 1461476 1461485 CTTAAAATACAAAAA TAAAGCGT ATTA ACGCTTTA TTTTCATTCTAAAAC TERM 1507 1461485 - 1461496 + r 77 -5.8 -4.80487 | opp_overlap 1461481 1461475, overlap 1461481 1461476 AAATACAAAAATAAA GCGT ATTA ACGC TTTATTTTCATTCTA purM 1462493 - 1461504 - | phosphoribosylaminoimidazole synthetase coaE 1462554 - 1463159 + | dephospho-CoA kinase TERM 1508 1463686 - 1463664 - gf 70 -5 -4.59853 | TTAATTTTGTAAAAA TTTTAGATGA AAA TCATTTAAAA GTTCGCACCTATGAA dapF 1463156 - 1463905 + | diaminopimelate epimerase Cj1532 1463880 - 1464611 + | putative periplasmic protein Cj1533c 1465645 - 1464608 - | putative helix-turn-helix containing protein TERM 1509 1464940 - 1464961 + g 83 -2.4 -5.88471 | overlap 1464941 TTCTTAGGCCAAAAT CTTTAAAA TAAATC TTTTGAAG TTTTTTTTCATCATG TERM 1510 1465649 - 1465667 + r 77 -9 -3.3573 | AAGTACTTTCAATTT TATCCTTT AAA AAAGGATA TTATAACCTAGTTTG TERM 1511 1465690 - 1465704 + r 73 -8.5 -3.2352 | opp_overlap 1465689 CTAGTTTGTATAATT GGGGC ATAAA GCCCC TTAAATTACATTTTG Cj1534c 1466159 - 1465710 - | putative bacterioferritin TERM 1512 1466246 - 1466188 - R 75 -7.5 -4.14392 | gap 1, opp_overlap 1466188 1466201 1466209, overlap 1466201 TTTTAATTTTTAAAA TTATAACATAAAATTCTTAAATAATAAT TATT ATTATTAATTAAAAATTTT-TATTATAA TTTTAACTTAAAATC TERM 1513 1466234 - 1466201 - R 71 -4.9 -4.76193 | opp_overlap 1466201 1466188 1466209, overlap 1466188 AATTATAACATAAAA TTCTTAAATAATAAT TATT ATTATTAATTAAAAA TTTTTATTATAATTT pgi 1467509 - 1466289 - | glucose-6-phosphate isomerase galU 1468327 - 1467503 - | UTP--glucose-1-phosphate uridylyltransferase TERM 1514 1468408 - 1468385 - R 77 -9.7 -3.06831 | opp_overlap 1468385 1468388, overlap 1468388 TGAATTTTCATGCAA CAAGGCAAA GTTCTT TTTGCCTTG TTATTCAAACTCTGC TERM 1515 1468385 - 1468408 + r 87 -10.4 -3.64487 | opp_overlap 1468385 1468388, overlap 1468388 TGAATTTTCATGCAA CAAGGCAAAG TTCT TTTTGCCTTG TTATTCAAACTCTGC acs 1470382 - 1468409 - | acetyl-CoA synthetase Cj1538c 1471515 - 1470520 - | putative anion-uptake ABC-transport system ATP-binding protein TERM 1516 1471092 - 1471103 + g 75 -4.4 -5.24449 | opp_overlap 1471092 TTACGCTTAAAGCTA TAGC AAAA GCTA TTTTTTGACTTTGTC TERM 1517 1471117 - 1471138 + g 73 -8.1 -3.54146 | overlap 1471115 1471121 TATTTTTTGACTTTG TCCTGATGA AAGT TCATTAGGA TGTTTACTTAAAAGA Cj1539c 1472236 - 1471517 - | putative anion-uptake ABC-transport system permease protein TERM 1518 1472226 - 1472251 + g 95 -6.3 -5.72616 | opp_overlap 1472228, overlap 1472228 CTTTTTAAAATAAGT AATTTTAGCAT AATT ATGCTAAAATA TTTTTTTATATAAAT TERM 1519 1472249 - 1472228 - G 77 -8.9 -3.68798 | opp_overlap 1472226 1472228 TTTTAAAATAAGTAA TTTTAGCAT AATT ATGCTAAAA TATTTTTTTATATAA TERM 1520 1472228 - 1472249 + g 88 -8.9 -4.50122 | opp_overlap 1472228, overlap 1472226 TTTTAAAATAAGTAA TTTTAGCAT AATT ATGCTAAAA TATTTTTTTATATAA Cj1540 1472282 - 1473091 + | putative periplasmic protein TERM 1521 1473118 - 1473095 - f 100 -12.6 -4.99972 | opp_overlap 1473093 1473091 AGAAAAGACTAAAAA TTAAGCAGGT TTTA ACCTGCTTAA AATATCATTTTTTAC TERM 1522 1473573 - 1473563 - g 74 -8.2 -3.63336 | opp_overlap 1473562 1473559 ATACAGCATTTTAAA GCCC ATG GGGC GCTTTATAATATGGC Cj1541 1473233 - 1474000 + | hypothetical protein TERM 1523 1474382 - 1474364 - g 70 -6 -4.25676 | AATCAAATTTCAAAA GAAGAGCT TAT ATCTCTTC ACACTAAACCTTATT TERM 1524 1474642 - 1474621 - g 76 -2.9 -5.6473 | opp_overlap 1474622 1474629, overlap 1474622 AGAAGATGAAAAAAA TCCCACTCT TTTA AAAGCGGGT ATGTTTTTAAAATTT Cj1542 1474010 - 1474750 + | putative allophanate hydrolase subunit 1 TERM 1525 1474879 - 1474858 - g 73 -8.1 -3.43751 | overlap 1474856 TAAGAATGGCAAATA TCTTGCTTG GAAA CAAACAAGA TGAAGCAGGAATTGA TERM 1526 1475111 - 1475101 - g 70 -4 -4.8622 | GCTTTGAAGTAAAAA GTTT TTT AAAC TCTAAATCCAGTGAT Cj1543 1474731 - 1475696 + | putative allophanate hydrolase subunit 2 Cj1544c 1476589 - 1475693 - | putative integral membrane protein TERM 1527 1476030 - 1476052 + g 91 -9.9 -4.05446 | opp_overlap 1476028 1476025 ATATAAAAGTTAATC GCCAAAGGG TGAGC TCCTTTGGC TTTATGATTAAACAC TERM 1528 1476619 - 1476629 + r 71 -2.6 -5.45726 | opp_overlap 1476618 1476619, overlap 1476618 ATTTTTAAGTCAAAT TTTT TAA AAAA TTTTTTTCAAGTGTA Cj1545c 1477200 - 1476622 - | MdaB protein homolog Cj1546 1477300 - 1477647 + | putative transcriptional regulator Cj1547 1477635 - 1478084 + | Blc protein homolog Cj1548c 1479162 - 1478086 - | putative NADP-dependent alcohol dehydrogenase TERM 1529 1478230 - 1478216 - G 75 -4.3 -5.27335 | opp_overlap 1478216 TGTTTTAAAGAAAAA TCAAG CATTT CTTGA GTTTCAGCAATACCA TERM 1530 1478480 - 1478493 + g 83 -2.3 -5.85244 | GAGCTTACACCCATA GCCAA AGCA TCGGC TTTTTTGTTTTCATT hsdR 1482485 - 1479390 - | putative type I restriction enzyme R protein TERM 1531 1479871 - 1479891 + g 73 -5.5 -4.67904 | TCATTTAGTATCTTT TTTAGCATT TCA AAGGCTAAA TTTTTACGCTTCATA TERM 1532 1480019 - 1480047 + g 76 -6.1 -4.53685 | opp_overlap 1480033, overlap 1480020 1480022 TAGCTTTATCTACTA CTTGCTTTATCAA AGC TTGATTAAGCAAA TTTTCATTCTCATTT TERM 1533 1480020 - 1480046 + g 80 -9.6 -3.30584 | opp_overlap 1480033, overlap 1480019 1480022 AGCTTTATCTACTAC TTGCTTTATCAA AGC TTGATTAAGCAA ATTTTCATTCTCATT TERM 1534 1480895 - 1480918 + g 71 -7.6 -3.4557 | gap 1, opp_overlap 1480903, overlap 1480898 1480903 GTCTGCTTGTGCTAC CTACTAAAGCT TCT AGCTT-AGTAG CTTTTGCTTTTTGGC TERM 1535 1480903 - 1480919 + g 72 -5.1 -4.78661 | opp_overlap 1480903, overlap 1480895 1480898 GTGCTACCTACTAAA GCTTCTA GCT TAGTAGC TTTTGCTTTTTGGCT rloH 1484254 - 1482488 - | putative ATP/GTP-binding protein TERM 1536 1484126 - 1484112 - G 70 -3.6 -5.0917 | TGATTAAAAAATAAA TTTAAG GCT CTCAAA AAATTAGTCTTTCCA hsdS 1485407 - 1484265 - | putative type I restriction enzyme S protein TERM 1537 1484826 - 1484812 - G 75 -7.2 -4.11216 | TCTTTACTCTTAAAA GCAAAA CCA TTTTGC ATAGATATAAAATCA mloB 1487092 - 1485626 - | conserved hypothetical protein Cj1552c hsdM 1488591 - 1487089 - | putative type I restriction enzyme M protein TERM 1538 1488932 - 1488955 + r 95 -9.7 -4.56969 | opp_overlap 1488932 TTAAAAGAAATAAAA GATGCCTTA AAAGCA TAAGGCATC TTTATTTATAGGCTT TERM 1539 1488955 - 1488932 - R 100 -9.7 -5.26247 | opp_overlap 1488932 TTAAAAGAAATAAAA GATGCCTTA AAAGCA TAAGGCATC TTTATTTATAGGCTT Cj1555c 1489596 - 1488961 - | hypothetical protein Cj1556 1489789 - 1490121 + | putative transcriptional regulator TERM 1540 1490122 - 1490159 + F 83 -8.9 -3.98842 | opp_overlap 1490126 1490130 1490142, overlap 1490123 1490126 1490130 AAAAATATCGTTTAA GTAATAAATTAATATAT CAAT ATATATTAATTTATTAA TTTATACATGTTATA TERM 1541 1490123 - 1490158 + F 91 -12.4 -2.98582 | opp_overlap 1490126 1490130 1490142, overlap 1490122 1490126 1490130 AAAATATCGTTTAAG TAATAAATTAATATAT CAAT ATATATTAATTTATTA ATTTATACATGTTAT TERM 1542 1490126 - 1490155 + F 82 -9.7 -3.6239 | opp_overlap 1490126 1490130 1490142, overlap 1490123 1490122 1490130 ATATCGTTTAAGTAA TAAATTAATATAT CAAT ATATATTAATTTA TTAATTTATACATGT TERM 1543 1490155 - 1490126 - f 80 -9.7 -3.34522 | opp_overlap 1490126 1490123 1490122 1490130, overlap 1490130 1490142 ATATCGTTTAAGTAA TAAATTAATATAT CAAT ATATATTAATTTA TTAATTTATACATGT TERM 1544 1490130 - 1490151 + F 71 -6.1 -4.42976 | opp_overlap 1490130 1490126 1490142, overlap 1490126 1490123 1490122 CGTTTAAGTAATAAA TTAATATAT CAAT ATATATTAA TTTATTAATTTATAC Cj1558 1490206 - 1490379 + | hypothetical protein Cj1561 1491162 - 1491341 + | putative transcriptional regulator Cj1562 1491332 - 1491484 + | hypothetical protein Cj1563c 1491923 - 1491492 - | putative transcriptional regulator TERM 1545 1493425 - 1493410 - g 72 -6.2 -4.28049 | GTTAAAATGCTAAAA CAAAGT TCAG ACTTTG CTAATGCTTTAGCTA Cj1564 1492003 - 1493991 + | putative methyl-accepting chemotaxis signal transduction protein pflA 1496400 - 1494034 - | paralysed flagellum protein TERM 1546 1495424 - 1495407 - G 76 -9.9 -2.64155 | overlap 1495404 TCTTTGCCAAACTCA TAGCTGC TCTT GCAGCTA AATCTAAATTTTTTG TERM 1547 1496050 - 1496028 - G 81 -7.2 -4.56597 | overlap 1496033 GTTCTGGTGTAAAAA TAAAAGTAAA AGC CTTACTTTTA TGCGAACTTGATGAA nuoN 1497810 - 1496422 - | NADH dehydrogenase I chain N TERM 1548 1496462 - 1496447 - G 70 -4 -4.94147 | AACAATATAACAAAA GTGCTT ACAC AAACAC AAAAAGCTAAAATAA nuoM 1499287 - 1497800 - | NADH dehydrogenase I chain M TERM 1549 1498264 - 1498249 - G 72 -4.8 -4.88293 | opp_overlap 1498249 1498247 AATGGTAAAAAGAAA TATCAT AAGT ATGATA TCTTTGGTATAAAAG TERM 1550 1498810 - 1498792 - G 71 -6.8 -3.90729 | AATAAGCTTGATAAA TCAATGCT ACA AGCATTAA AATTGAACCCGCAAA nuoL 1501079 - 1499289 - | NADH dehydrogenase subunit L nuoK 1501377 - 1501081 - | NADH dehydrogenase I chain K nuoJ 1501892 - 1501374 - | NADH dehydrogenase subunit J nuoI 1502530 - 1501889 - | NADH dehydrogenase subunit I nuoH 1503538 - 1502540 - | NADH dehydrogenase subunit H nuoG 1505993 - 1503531 - | NADH dehydrogenase subunit G TERM 1551 1503697 - 1503720 + g 75 -4 -5.20783 | TCTTTTATTTTAAGT TTTACAAGAT CTTT ATCTTTTAAA TTTTTCTCTTTAGCT Cj1574c 1506682 - 1505990 - | hypothetical protein TERM 1552 1506427 - 1506411 - G 80 -6.5 -5.00884 | opp_overlap 1506411 ACCTCTTTTAAAAAA GCAAGCA CTT CGCCTGC TTCTTCCTCTCCAAA Cj1575c 1506906 - 1506679 - | hypothetical protein nuoD 1508129 - 1506903 - | NADH dehydrogenase subunit D TERM 1553 1507393 - 1507373 - G 71 -6.9 -3.97834 | opp_overlap 1507372 CAACTTCATTATAAA GCAAATAAG GCT CTTCTTTGC GTATATCGTATTTTA TERM 1554 1507862 - 1507876 + g 76 -10 -2.84173 | opp_overlap 1507861 1507859 1507858 AATAAGCATAATTAT TCGCTG AAG CAGCGA TATAGTCCATTCTAT nuoC 1508925 - 1508131 - | NADH dehydrogenase subunit C nuoB 1509425 - 1508922 - | NADH dehydrogenase subunit B nuoA 1509796 - 1509407 - | NADH dehydrogenase subunit A Cj1580c 1510574 - 1509909 - | putative peptide ABC-transport system ATP-binding protein TERM 1555 1510237 - 1510248 + g 71 -3 -5.31158 | opp_overlap 1510237 AAATTTTCCAAACCA TCTT GTAT AAGA TTTTTGATTTTTTTA Cj1581c 1511277 - 1510567 - | putative peptide ABC-transport system ATP-binding protein Cj1582c 1512068 - 1511274 - | putative peptide ABC-transport system permease protein Cj1583c 1512999 - 1512055 - | putative peptide ABC-transport system permease protein TERM 1556 1512137 - 1512127 - G 79 -5.4 -5.30575 | TAAAAATGTAAAAAA TGCT GCA AGCA AAACACTAAAAAATA TERM 1557 1512203 - 1512189 - G 71 -5.8 -4.42235 | overlap 1512176 AATCTTTAAAAATAA TACTTT TAA AAAGTA AAGATCCAAGCCCCT TERM 1558 1512845 - 1512833 - G 74 -7.7 -3.72893 | opp_overlap 1512832 TACTGCTCTAGCAAA GGCTT ATC AAGCC CTAAATTTTGTTCTA Cj1584c 1514534 - 1512999 - | putative peptide ABC-transport system periplasmic peptide-binding protein Cj1585c 1517415 - 1514644 - | putative oxidoreductase TERM 1559 1515911 - 1515926 + g 85 -2.6 -5.84381 | opp_overlap 1515903, overlap 1515909 AATAAACTATCCTTA TCAAAG ATAC TTTTGA TTTTTTTATTGATCA TERM 1560 1517019 - 1517039 + g 81 -2.5 -5.7946 | opp_overlap 1517019, overlap 1517027 TTAAAGCTGAATTTA TAGTAGCTG GAT CAGGTCCTA TTTTTTTCTTCAAAA cgb 1517567 - 1517989 + | single domain haemoglobin TERM 1561 1518011 - 1517990 - T 73 -6.7 -4.11183 | gap 1, opp_overlap 1517995, overlap 1517995 CTCTATGATAAATAA TATAAGCCCA TTT TGGGCTT-TA ATCAAATTTTTCTAC TERM 1562 1517995 - 1518007 + T 81 -9.1 -3.79623 | opp_overlap 1517990 1517995 TGATAAATAATATAA GCCCA TTT TGGGC TTTAATCAAATTTTT TERM 1563 1518007 - 1517995 - T 83 -9.1 -3.93744 | opp_overlap 1517995, overlap 1517990 TGATAAATAATATAA GCCCA TTT TGGGC TTTAATCAAATTTTT Cj1587c 1519640 - 1518009 - | multidrug transporter membrane component/ATP-binding component TERM 1564 1518149 - 1518178 + g 71 -7.4 -3.73995 | gap 1, overlap 1518161 TGATAGCAAAGATTG TTTTACC-TTGCT CTTTT AGCAAAGGTAAAA GTTTTTTATAAAAAA TERM 1565 1518161 - 1518179 + g 77 -4.6 -5.24129 | overlap 1518149 TTGTTTTACCTTGCT CTTTTAGC AAA GGTAAAAG TTTTTTATAAAAAAA TERM 1566 1518571 - 1518559 - G 75 -4.8 -5.07941 | opp_overlap 1518559 AAAAGCATACAAAAA GTGG ATTTA CCAC TTCCATTTTTACCTA TERM 1567 1518667 - 1518679 + g 85 -4.9 -5.53288 | opp_overlap 1518676 TAAGCAAATTGAGTA TTTCT AAA AGAAA TTTTTTTCCATTCAC TERM 1568 1519165 - 1519153 - G 73 -3.5 -5.1861 | TTCATCATCAAAAAA TTATT AGT AATAA AAATAACCATAATCC Cj1588c 1520985 - 1519690 - | putative MFS (Major Facilitator Superfamily) transport protein TERM 1569 1520527 - 1520544 + g 70 -3.5 -5.07486 | TGAATTTAAACAGCT TAAAAAG AAAG CTTTTTG TTTTTCTTGACAATA Cj1589 1521072 - 1521869 + | conserved hypothetical protein Cj1189 infA 1521957 - 1522175 + | translation initiation factor IF-1 rpmJ 1522347 - 1522460 + | 50S ribosomal protein L36 rpsM 1522463 - 1522828 + | 30S ribosomal protein S13 rpsK 1522838 - 1523230 + | 30S ribosomal protein S11 rpsD 1523258 - 1523884 + | 30S ribosomal protein S4 rpoA 1523897 - 1524910 + | DNA-directed RNA polymerase subunit alpha rplQ 1524914 - 1525267 + | 50S ribosomal protein L17 TERM 1570 1525273 - 1525290 + F 81 -9.9 -3.28984 | opp_overlap 1525273 TGTAGCTTAATCAAA TCCTAGC TTTT GCTAGGA TTAATACTTCAATTA TERM 1571 1525290 - 1525273 - f 88 -9.9 -3.91911 | opp_overlap 1525273 TGTAGCTTAATCAAA TCCTAGC TTTT GCTAGGA TTAATACTTCAATTA TERM 1572 1525799 - 1525785 - g 77 -5.8 -4.87892 | opp_overlap 1525784, overlap 1525786 CCTCAAGAAAATAAA TTTCAA AAT TTGAAA GATTTTGAAGGCTTA TERM 1573 1526167 - 1526150 - g 79 -5.6 -5.07652 | overlap 1526161 TGCTCCAAAAGAAAA GCTTGA TAAAAT TCAAGC CCTACTTCCAGGAGT TERM 1574 1526236 - 1526225 - g 78 -3 -5.56568 | opp_overlap 1526225 ACACGATGAAAAAAA TGTA GCTT TACA TATGGTAAGTAAAGA hisG 1525440 - 1526339 + | ATP phosphoribosyltransferase TERM 1575 1526406 - 1526395 - g 71 -5.8 -4.42156 | overlap 1526404 AAACAAAAAGAAGAA GCGT TAAA ACGC CCTGCTATAAGTGCG TERM 1576 1526779 - 1526795 + G 87 -10.9 -3.2963 | TTAATGCTAGCTATT CCTGCAA AAA TTGCAGG TTGTGAAAAAATCGT TERM 1577 1527239 - 1527208 - g 74 -8.2 -3.55181 | gap 1, opp_overlap 1527233, overlap 1527223 CAAAGTCAATTAGAA CTTTTGCCTCGCAAA GAA CTTGCAA-GCAAAAG CATTGCTAATTCACG hisD 1526347 - 1527633 + | histidinol dehydrogenase TERM 1578 1527804 - 1527817 + G 72 -6.7 -4.07568 | opp_overlap 1527795 1527794 1527813 AGCAATCAAGACGGT CTTGG AACA CCAAG TTTTCCAAAGGAAAA TERM 1579 1527818 - 1527832 + G 75 -7.2 -4.14739 | opp_overlap 1527818 1527817 1527813 TCTTGGAACACCAAG TTTTCC AAA GGAAAA TTTTGAAATCGCTCA hisB 1527630 - 1528688 + | imidazole glycerol-phosphate dehydratase/histidinol phosphatase hisH 1528685 - 1529272 + | imidazole glycerol phosphate synthase subunit HisH TERM 1580 1529361 - 1529350 - g 88 -3 -6.13503 | TACGAACAAAAAAAA GTAT ATAA ATAC AATCCCTTAAAGAAA hisA 1529269 - 1530000 + | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TERM 1581 1530165 - 1530181 + G 70 -5.2 -4.55295 | opp_overlap 1530165 TATGTTGATATAAAA GAATTG CAACA CAATTC TTTGTTTATCAAAGC TERM 1582 1530181 - 1530165 - g 73 -5.9 -4.53303 | opp_overlap 1530165 TATGTTGATATAAAA GAATTGC AAC ACAATTC TTTGTTTATCAAAGC Cj1602 1529985 - 1530941 + | conserved hypothetical protein Cj1602 TERM 1583 1531029 - 1531016 - g 72 -5.3 -4.8066 | overlap 1531023 AACACAATTTAAAAA CCATA AAGA TATGG GAGATATCATAGAGC hisF 1530942 - 1531709 + | imidazole glycerol phosphate synthase subunit HisF TERM 1584 1531752 - 1531742 - g 71 -3.2 -5.29385 | AACTTAATGAAAAAA TCGC TTG GCAA AAAGTGGATAATCTT hisI 1531711 - 1532334 + | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 1585 1532345 - 1532321 - T 93 -8.7 -4.86613 | overlap 1532323 CAAAATTAAAAGAAA GACATAAAGCT TAA AGCTTTATGTA AAATAAATTTATATC TERM 1586 1532343 - 1532323 - T 95 -11.3 -4.00914 | overlap 1532321 AAATTAAAAGAAAGA CATAAAGCT TAA AGCTTTATG TAAAATAAATTTATA dapD 1533519 - 1532359 - | putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase mrp 1534651 - 1533545 - | putative ATP/GTP-binding protein (Mrp protein homolog) TERM 1587 1534984 - 1534971 - g 72 -5.3 -4.79667 | AAAATTTACCAAAAA CTATG AATT CATAG AAGGTGGTGATACCA ispDF 1534774 - 1535889 + | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein Cj1608 1535886 - 1536773 + | putative two-component regulator Cj1609 1536751 - 1537911 + | putative sulfate adenylyltransferase pgpA 1537916 - 1538416 + | putative phosphatidylglycerophosphatase rpsT 1538495 - 1538758 + | 30S ribosomal protein S20 TERM 1588 1539131 - 1539141 + G 70 -5.4 -4.55295 | GCAGGCACAGGTGGC GATG AGG CATC TTTATTTGTGGGAGA prfA 1538777 - 1539844 + | peptide chain release factor 1 Cj1613c 1540613 - 1539858 - | putative pyridoxamine 5'-phosphate oxidase TERM 1589 1540375 - 1540396 + g 73 -9.5 -2.54566 | overlap 1540374 1540372 CTAAAATTTTGCTCG CTCTTTGCA CTCA TGCAAAGGG ATATTATAGCATCTT TERM 1590 1542035 - 1542056 + GH 73 -8.1 -3.41051 | TTACTTTATCCGGTG GAGCTAGAT ATGA ATTTAGCTC TTATAATACCGATAG chuA 1540807 - 1542936 + | haemin uptake system outer membrane receptor chuB 1542911 - 1543897 + | putative haemin uptake system permease protein chuC 1543897 - 1544673 + | putative haemin uptake system ATP-binding protein chuD 1544670 - 1545476 + | putative haemin uptake system periplasmic haemin-binding protein Cj1618c 1546390 - 1545473 - | putative radical SAM domain protein TERM 1591 1546398 - 1546409 + H 78 -3 -5.7827 | TGTAACATTTTTATC GATA TTTT TATC TTTTTTATTTCTCTT TERM 1592 1546999 - 1547011 + G 90 -4.9 -5.75538 | TTTGGCCGTTGCAAG CATTA GTA TAATG TTTTTATTTTTTAGC TERM 1593 1547418 - 1547432 + G 75 -4.3 -5.1925 | GTATTTTGGCATTGG TAGGA ATTTA TCCTA TTTTTTCACTTATAG kgtP 1546496 - 1547755 + | alpha-ketoglutarate permease mutY 1548760 - 1547741 - | A/G-specific adenine glycosylase TERM 1594 1547797 - 1547772 - G 72 -7.6 -3.55622 | opp_overlap 1547776, overlap 1547776 TTTAACGCTTTTAAA GAAAGTGCCG AAAGTG CGGTACTTTC TAACTCTTTTAAGGT TERM 1595 1548796 - 1548775 - H 70 -7.5 -3.50929 | opp_overlap 1548792, overlap 1548772 TAAATGAGAGTATAA CAAAAAATT TTAA AATTTTTTG CTAAAATTAGCTCAA TERM 1596 1549499 - 1549476 - g 72 -8.2 -3.25341 | overlap 1549474 ATGCCAATACCAATA TCGCACCTAG AATG CTAAATGCGA AATCTGACAATATAG Cj1621 1548833 - 1549585 + | putative periplasmic protein TERM 1597 1549628 - 1549586 - f 74 -7.3 -3.92542 | opp_overlap 1549587 1549588, overlap 1549587 1549590 1549598 TTTATTTGCAAATAA CTTATAGCAAAATAAACTC CTTTT AAGTTTATTTTGCTATACT TTTATCTTCAATTCT TERM 1598 1549627 - 1549587 - f 83 -10.8 -2.95204 | opp_overlap 1549587 1549588, overlap 1549586 1549590 1549598 TTATTTGCAAATAAC TTATAGCAAAATAAACTC CTTTT AAGTTTATTTTGCTATAC TTTTATCTTCAATTC TERM 1599 1549587 - 1549627 + F 95 -10.1 -4.7033 | opp_overlap 1549587 1549586 1549590 1549598, overlap 1549588 TTATTTGCAAATAAC TTATAGCAAAATAAACT CCTTTTA AGTTTATTTTGCTATAC TTTTATCTTCAATTC TERM 1600 1549588 - 1549626 + F 100 -13.6 -3.41114 | opp_overlap 1549587 1549586 1549590 1549598, overlap 1549587 TATTTGCAAATAACT TATAGCAAAATAAACT CCTTTTA AGTTTATTTTGCTATA CTTTTATCTTCAATT TERM 1601 1549624 - 1549590 - f 95 -12.5 -2.71101 | opp_overlap 1549588 1549587, overlap 1549587 1549586 1549598 TTTGCAAATAACTTA TAGCAAAATAAACTC CTTTT AAGTTTATTTTGCTA TACTTTTATCTTCAA TERM 1602 1549698 - 1549682 - f 75 -9.5 -2.62983 | overlap 1549685 CTCAGGGGTAGAGCA CAACCTT GCC AAGGTTG GGGTCGCGAGTTCGA TERM 1603 1549786 - 1549766 - f 71 -8.3 -2.89742 | overlap 1549769 TGGAATTGGTAGACA CAAGGGACT TAA AATCCCTCG GAATTTTTCTTCCGT TERM 1604 1550387 - 1550374 - g 76 -2.5 -5.56112 | ATAAAAATGAAAAAA TTTTA GCCA TAAAA GCTCATGAAAAAGCT TERM 1605 1550650 - 1550626 - g 74 -3 -5.41143 | TAGGTTTTAAAAAAA TTTTCATC AGCGTTAAA GATGAAAA TAAAATCGCAAGCGG TERM 1606 1550766 - 1550793 + G 88 -9.4 -4.03413 | gap 1, opp_overlap 1550766 TTAAAATGGCAAAAA GGGC-AATTTAAA CTT TTTAAATTAGCCC TTTCTATGAACGGCT TERM 1607 1550793 - 1550766 - g 100 -9.4 -4.7416 | gap 1, opp_overlap 1550766 TTAAAATGGCAAAAA GGGC-AATTTAAA CTT TTTAAATTAGCCC TTTCTATGAACGGCT ribD 1550235 - 1551245 + | riboflavin-specific deaminase/reductase Cj1623 1551226 - 1551747 + | hypothetical protein TERM 1608 1551762 - 1551733 - T 100 -9.5 -5.4148 | opp_overlap 1551733 1551742, overlap 1551737 CAAAGAATGAAAAAA TACACTAAAGTGT AAAA ACACTTTAGCATA CTGTTTTTAAATTTG TERM 1609 1551758 - 1551737 - T 85 -10.3 -3.71857 | opp_overlap 1551733 1551742, overlap 1551733 GAATGAAAAAATACA CTAAAGTGT AAAA ACACTTTAG CATACTGTTTTTAAA sdaA 1553119 - 1551755 - | L-serine dehydratase sdaC 1554384 - 1553134 - | amino acid transporter TERM 1610 1553858 - 1553846 - G 70 -6.3 -4.17537 | GCAAATAACGATAAA TTCCA TTG TGGAA TTAAAAGCAATGAAA TERM 1611 1554118 - 1554107 - G 83 -3 -5.69023 | AAAATAGCAAAAAAA TACA AAAG TGTA ATTAAAAATCCACCG TERM 1612 1554602 - 1554581 - R 100 -7.4 -5.77571 | opp_overlap 1554581 ATCAAAAAATAAAAA TTTGGAAG ACTATG CTTCCAAA TTTTTGCATCAAATT TERM 1613 1554581 - 1554602 + r 81 -7.4 -4.67011 | opp_overlap 1554581 ATCAAAAAATAAAAA TTTGGAAG ACTATG CTTCCAAA TTTTTGCATCAAATT Cj1626c 1555060 - 1554644 - | putative periplasmic protein Cj1627c 1555867 - 1555124 - | hypothetical protein exbB2 1556025 - 1556450 + | putative exbB/tolQ family transport protein exbD2 1556443 - 1556832 + | putative exbD/tolR family transport protein TERM 1614 1556904 - 1556924 + G 72 -4.1 -5.0538 | ATACCTTTACTTTTT GTCATTT TTCACTC AAATGAC TTTTTTAAAATGGAA tonB2 1556829 - 1557512 + | putative TonB transport protein Cj1631c 1558394 - 1557525 - | conserved hypothetical protein Cj1631c TERM 1615 1557555 - 1557565 + g 72 -4 -5.08255 | overlap 1557557 TACAATTTGTGCTTC TTGA TTT TCAA TTTTATTTTGAAAAT TERM 1616 1557604 - 1557614 + g 70 -4 -4.90917 | overlap 1557608 AAATTCTGACTTAAT TCTT GCA AAGA TTTTTGCTTCAGTTT Cj1632c 1558559 - 1558398 - | putative periplasmic protein Cj1633 1558654 - 1559637 + | putative ATP-binding protein TERM 1617 1559702 - 1559717 + T 100 -9 -6.11229 | opp_overlap 1559702 AAATATTGCAATCAA GCCCAT GAAA ATGGGC TTTTTTTATTTTAAT TERM 1618 1559717 - 1559702 - T 77 -9 -3.37901 | opp_overlap 1559702 AAATATTGCAATCAA GCCCAT GAAA ATGGGC TTTTTTTATTTTAAT aroC 1560811 - 1559723 - | chorismate synthase rnc 1561485 - 1560811 - | ribonuclease III TERM 1619 1560936 - 1560912 - G 89 -11.7 -2.80016 | opp_overlap 1560917, overlap 1560917 CTTTACCATCAAGCA TTAAAGCAATT TCA AATTGCTTTAA ATGATCAGGGCCAAA TERM 1620 1560931 - 1560917 - G 71 -7.2 -3.85704 | opp_overlap 1560917, overlap 1560912 CCATCAAGCATTAAA GCAATT TCA AATTGC TTTAAATGATCAGGG rnhA 1561912 - 1561472 - | ribonuclease H Cj1637c 1562885 - 1561899 - | putative periplasmic protein TERM 1621 1562691 - 1562671 - G 72 -4.1 -5.09225 | ATTTCAGCCAAAAAA CTTAAATTT CCA AAACTCAAG CTACTATTTCTTAAT TERM 1622 1564600 - 1564574 - g 72 -4.7 -4.87665 | GCTTATTGATAAAAA TTTAAATCTTT TAATT AAAAATTTAAA TACCGCAGAATTAAA dnaG 1562955 - 1564772 + | DNA primase Cj1639 1564854 - 1565126 + | NifU protein homolog Cj1640 1565113 - 1565664 + | hypothetical protein TERM 1623 1566870 - 1566882 + G 72 -6.3 -4.30844 | opp_overlap 1566865 1566864 CTCAAGAAATTAAAG GGATA AAA TATCC TTTTAGTGATAAAGT murE 1565648 - 1566931 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase Cj1642 1566935 - 1567246 + | hypothetical protein Cj1643 1567243 - 1568337 + | putative periplasmic protein ispA 1568334 - 1569179 + | geranyltranstransferase TERM 1624 1570765 - 1570804 + G 72 -6.7 -4.0371 | gap 1, opp_overlap 1570772 1570775 AAAGAAAGCAAAGAG GCTAAATTTACACTTCTA GCAAG TGGAAGTG-AAGTTTGGC TTTGTCTAGAAAGTG tkt 1569190 - 1571088 + | transketolase iamB 1571090 - 1572199 + | putative ABC transport system permease iamA 1572200 - 1572922 + | putative ABC transport system ATP-binding protein TERM 1625 1573690 - 1573678 - g 74 -7.7 -3.86916 | opp_overlap 1573683 TATGATGATATTAAA GCATC TTT GATGC AAAATTTAGAACTTT TERM 1626 1573750 - 1573770 + G 72 -8.3 -3.33922 | opp_overlap 1573750 1573755, overlap 1573749 CTAATAGAAAATTTA CAAAACAGC CCT GCTGATTTG ATTTTTAAAGAAACT TERM 1627 1573765 - 1573755 - g 78 -6.8 -4.5538 | opp_overlap 1573750 1573749, overlap 1573750 AGAAAATTTACAAAA CAGC CCT GCTG ATTTGATTTTTAAAG Cj1648 1572925 - 1573815 + | putative ABC transport system periplasmic substrate-binding protein TERM 1628 1574375 - 1574385 + G 72 -4 -5.10497 | CTTGAATAAAATTGG CAAT GAG ATTG TTTTTTGGGTAAATT Cj1649 1573815 - 1574414 + | putative lipoprotein TERM 1629 1574550 - 1574536 - g 71 -7.2 -3.81027 | overlap 1574546 GTGAATGAATTTAAA GCAAAT CAA ATTTGC TCTCAAATCAATGAT TERM 1630 1574584 - 1574596 + G 71 -7.7 -3.40082 | opp_overlap 1574584, overlap 1574589 AATGATTTTATAGGA GCACT TCA AGTGC TTGATATGTCTTTAA TERM 1631 1574886 - 1574870 - g 71 -2.3 -5.35815 | opp_overlap 1574873, overlap 1574873 GAGATGAAATAAAAA TCATTCT ATC AGAATTA TCAACCGCAATTACC Cj1650 1574470 - 1574970 + | hypothetical protein TERM 1632 1574988 - 1575026 + T 100 -12 -4.10657 | opp_overlap 1575012 ATAGTAATCGTTTGT TCTCTTTAAGCAAATATA ATA TATTTTAGCTTAAAGAGA TTTTCCAAACTCTAA TERM 1633 1575111 - 1575094 - T 71 -8.5 -2.85354 | opp_overlap 1575094, overlap 1575093 1575096 TAGCCTAACCCAAAC GAGATCT TAAA AGATCTC TTTAAACTAAAATAA TERM 1634 1575094 - 1575111 + T 77 -8.5 -3.60627 | opp_overlap 1575094 1575093 1575096 TAGCCTAACCCAAAC GAGATCT TAAA AGATCTC TTTAAACTAAAATAA TERM 1635 1575168 - 1575128 - T 93 -8.7 -4.82998 | opp_overlap 1575128 1575128 1575162, overlap 1575130 TTAAACTAAAATAAA TATTTAGATAATTTAACAA TTT TTATTAAATTATCTAAACC ATATTTATGTTTTAG TERM 1636 1575166 - 1575130 - T 100 -13.5 -4.00914 | opp_overlap 1575128 1575128 1575162, overlap 1575128 AAACTAAAATAAATA TTTAGATAATTTAACAA TTT TTATTAAATTATCTAAA CCATATTTATGTTTT map 1576097 - 1575339 - | methionine aminopeptidase murI 1576851 - 1576099 - | glutamate racemase Cj1653c 1577311 - 1576853 - | putative lipoprotein nhaA2 1578489 - 1577320 - | Na(+)/H(+) antiporter nhaA1 1579634 - 1578486 - | Na(+)/H(+) antiporter TERM 1637 1579764 - 1579732 - R 83 -5 -5.49729 | gap 1, opp_overlap 1579754, overlap 1579754 AATTATTTAAAAAAA CAAGCCCAAGATACC AAAA AGT-TCTTAAGCTTG TTCTTAAGATATTTA Cj1656c 1579959 - 1579777 - | hypothetical protein TERM 1638 1580704 - 1580669 - H 79 -5.8 -5.05228 | opp_overlap 1580669, overlap 1580686 ATTAAATCACAAAAA TAAAATATATTTAAAT ATTT ATTAAAATACATTTTA TAATTTAATAAAAAA TERM 1639 1581825 - 1581811 - g 70 -4.2 -4.96388 | AATGATGAAACAAAA GGCAAA GAT TATGCC AAAGTTTCTAATGAT TERM 1640 1582523 - 1582537 + G 75 -4.2 -5.24531 | CTGTTTATAGAGAAG GTGCAG AAA CTGTGC TTTTTTATCAAGCCT Cj1658 1580836 - 1582926 + | putative iron permease p19 1582923 - 1583462 + | periplasmic protein p19 TERM 1641 1583460 - 1583494 + F 74 -2.8 -5.77734 | overlap 1583463 1583468 1583493 ACAGGCACGCCAAAA TAATTTTACGCTCGGA TTT TCCGAGTGTTTGAATA TTTTTATTTTTATTT TERM 1642 1583468 - 1583486 + F 95 -11 -3.89368 | overlap 1583463 1583460 GCCAAAATAATTTTA CGCTCGGA TTT TCCGAGTG TTTGAATATTTTTAT Cj1660 1583545 - 1584948 + | putative integral membrane protein Cj1661 1584935 - 1586227 + | possible ABC transport system permease Cj1662 1586217 - 1587335 + | putative integral membrane protein Cj1663 1587332 - 1587985 + | putative ABC transport system ATP-binding protein Cj1664 1587982 - 1588470 + | putative periplasmic thiredoxin Cj1665 1588431 - 1588934 + | putative lipoprotein thiredoxin Cj1666c 1589381 - 1588944 - | putative periplasmic protein Cj1667c 1589614 - 1589462 - | RepA protein homolog TERM 1643 1589636 - 1589663 + r 100 -9.8 -5.28942 | TTCTAATGGTGGATT TCCGCCAAGAGT GAAA ACTCAAGGCGGA TTTTTATTTGCAATA Cj1668c 1590096 - 1589680 - | putative periplasmic protein TERM 1644 1590131 - 1590157 + r 71 -4.6 -4.85433 | opp_overlap 1590143, overlap 1590125 1590153 TTTTGTATATTTGAA TTATTTTTCAAA TCT TTTGCAAGATAA TTTTTAAATTTATCT TERM 1645 1590394 - 1590408 + r 72 -7.8 -3.322 | CGAACCTCTGACCTA CGGCTT AGA AGGCCG TTGCTCTATCCAGCT Cj1669c 1591600 - 1590752 - | DNA ligase cgpA 1592262 - 1591600 - | putative periplasmic protein Cj1671c 1592455 - 1592252 - | hypothetical protein eno 1593765 - 1592521 - | phosphopyruvate hydratase recA 1594796 - 1593765 - | recombinase A TERM 1646 1594729 - 1594741 + g 76 -6.3 -4.55721 | AGTCTTAAAATAGTG CCTTT TCC AAAGG TTTTATCTAAACTTT Cj1674 1594902 - 1595762 + | conserved hypothetical protein Cj1674 fliQ 1595774 - 1596043 + | flagellar biosynthesis protein FliQ murB 1596040 - 1596816 + | UDP-N-acetylenolpyruvoylglucosamine reductase TERM 1647 1597830 - 1597818 - g 71 -7.7 -3.39505 | ATGGTATATGGATAA GTAGC AAT GCTAC CATAGAAAAGCTTGT TERM 1648 1600107 - 1600095 - g 72 -6.3 -4.25104 | opp_overlap 1600094 1600085 TTTTCTCTACTAAAA CAAGT CTT ACTTG GTTTAGAGATTGGTT Cj1677 1597008 - 1600372 + | putative lipoprotein TERM 1649 1600426 - 1600463 + F 78 -4.3 -5.33331 | opp_overlap 1600427 1600428, overlap 1600428 TCCTACTTGTTAAAA ATTTCATCCTGATAATT TTAA AATTATTAGGATGGATG TTTTTATTGTATTTA TERM 1650 1600428 - 1600461 + F 95 -11.3 -4.26142 | opp_overlap 1600427 1600428, overlap 1600426 CTACTTGTTAAAAAT TTCATCCTGATAATT TTAA AATTATTAGGATGGA TGTTTTTATTGTATT TERM 1651 1601221 - 1601231 + G 70 -5.4 -4.65838 | overlap 1601205 CCAAAAAGCATACTT GCTT TTT AAGC TTTTTAGAATATCTG Cj1679 1600574 - 1602328 + | conserved hypothetical protein Cj1679 Cj1680c 1603099 - 1602332 - | putative periplasmic protein cysQ 1603903 - 1603139 - | CysQ protein homolog TERM 1652 1603692 - 1603702 + g 75 -4 -5.22006 | TCTTCACACTCTTCT TTAC TGA GTAA TTTTTCTTCTGATAG TERM 1653 1603948 - 1603975 + r 73 -8.6 -3.27278 | opp_overlap 1603948, overlap 1603928 1603947 AATTATACAAGAAGA TTTTGTGGAATT TTTA ATTTCCACAAAA ATTTTAATTAAATTT TERM 1654 1603975 - 1603948 - R 77 -8.6 -3.54548 | opp_overlap 1603928 1603948 1603947 AATTATACAAGAAGA TTTTGTGGAATT TTTA ATTTCCACAAAA ATTTTAATTAAATTT gltA 1605251 - 1603983 - | citrate synthase TERM 1655 1604298 - 1604316 + g 71 -4.6 -4.83615 | AAGCTTTTTCAGTAC TTTTGCTC TAG GATCAAAA TTTTTATAAACCCTA Cj1684c 1606541 - 1605366 - | putative transmembrane transport protein TERM 1656 1606429 - 1606415 - G 75 -7.2 -4.17048 | TTGCCCCTAAAATAA TTTCAG TAG CTGAAA GAGGCAAGCGTAAAA bioB 1607358 - 1606522 - | biotin synthase topA 1609462 - 1607360 - | DNA topoisomerase I TERM 1657 1609596 - 1609582 - H 72 -4.4 -4.92812 | TCATAACAAAATAAA TAAAAT ATA ATTTTA AGTAATTTTAAATAC TERM 1658 1610198 - 1610212 + G 71 -2.1 -5.4659 | AAGGATTTTTTTGTG CAGTA GGGGG TGCTG TTTTTATTTCTATTG TERM 1659 1610393 - 1610405 + G 81 -2.7 -5.67967 | overlap 1610394 GGCAATTTTTCCCTA TCTAT TTT ATAGG TTTTTTTATCATGGT Cj1687 1609657 - 1610928 + | putative efflux protein TERM 1660 1610946 - 1610925 - T 91 -10.3 -4.38114 | opp_overlap 1610925 AAAACCTAGAATAAA TTAGCAAGA AAAA TCTTGCTAA TTTTATTTATTACAA TERM 1661 1610925 - 1610946 + T 100 -10.3 -5.09762 | opp_overlap 1610925 AAAACCTAGAATAAA TTAGCAAGA AAAA TCTTGCTAA TTTTATTTATTACAA secY 1612221 - 1610956 - | preprotein translocase subunit SecY TERM 1662 1611001 - 1611011 + g 70 -4 -4.93898 | opp_overlap 1611001 TTTACTCATATAAAT TTGA GCT TCAA TTTTTCTCATCGTAT TERM 1663 1611575 - 1611555 - G 81 -8.4 -4.0492 | overlap 1611558 CAAGTTCTATATAAA TAATCACC CCTAT GGTGATTA AAATCAAAGCAAAAA rplO 1612613 - 1612221 - | 50S ribosomal protein L15 rpsE 1613061 - 1612618 - | 30S ribosomal protein S5 rplR 1613429 - 1613073 - | 50S ribosomal protein L18 rplF 1613975 - 1613439 - | 50S ribosomal protein L6 rpsH 1614449 - 1614054 - | 30S ribosomal protein S8 rpsN 1614644 - 1614459 - | 30S ribosomal protein S14 rplE 1615191 - 1614646 - | 50S ribosomal protein L5 TERM 1664 1615025 - 1615047 + g 70 -4.3 -4.93696 | gap 1, opp_overlap 1615025, overlap 1615030 GCAATTAAAGAAATA GTATCTGCAA CATT TTGCA-ATAC TTTTTGATCTTTAGC rplX 1615428 - 1615195 - | 50S ribosomal protein L24 TERM 1665 1615318 - 1615328 + g 72 -5.4 -4.70659 | ACATCCTTCAACTAC CACT TTA AGTG TTTTTGGATATACCG rplN 1615796 - 1615428 - | 50S ribosomal protein L14 rpsQ 1616047 - 1615796 - | 30S ribosomal protein S17 rpmC 1616242 - 1616057 - | 50S ribosomal protein L29 TERM 1666 1616165 - 1616185 + g 70 -5.5 -4.24123 | opp_overlap 1616164 CTTTTGTTTTAAAGT GAATAAAAG CAC CTTTTTTTC TTTTAGCATTGTTGC rplP 1616654 - 1616229 - | 50S ribosomal protein L16 rpsC 1617358 - 1616657 - | 30S ribosomal protein S3 rplV 1617783 - 1617358 - | 50S ribosomal protein L22 TERM 1667 1617423 - 1617443 + g 81 -2.6 -5.80817 | overlap 1617425 CTGGAGCTTTTGTTG TAGTAGTT TTTTT AGCTACTG TTTTTTTCTCTTCAG rpsS 1618075 - 1617794 - | 30S ribosomal protein S19 rplB 1618907 - 1618077 - | 50S ribosomal protein L2 TERM 1668 1618198 - 1618218 + g 76 -9.7 -2.83677 | GAATTTTTCTTACCT TCACCCCCA CCG TGCGGGTGA TCTACTGGGTTCATT rplW 1619190 - 1618909 - | 50S ribosomal protein L23 rplD 1619807 - 1619193 - | 50S ribosomal protein L4 rplC 1620379 - 1619804 - | 50S ribosomal protein L3 rpsJ 1620700 - 1620389 - | 30S ribosomal protein S10 TERM 1669 1620811 - 1620847 + r 95 -9.7 -4.70879 | opp_overlap 1620809 1620837 AATTTGATGAAATTT TTCTATTATTTTCCTTT TAA AAAGGATAAAAATAGAA TTTTTAGAATTTAAA Cj1709c 1621660 - 1620899 - | putative ribosomal pseudouridine synthase TERM 1670 1621678 - 1621691 + r 84 -5.9 -5.15969 | opp_overlap 1621678, overlap 1621668 1621666 GATCTTCCTTAAAAA GGGCG TTTT TGCCC TTTTTTACATTACAA TERM 1671 1621691 - 1621678 - R 70 -5.2 -4.57073 | opp_overlap 1621668 1621666 1621678 GATCTTCCTTAAAAA GGGC GTTTTT GCCC TTTTTTACATTACAA Cj1710c 1623690 - 1621696 - | putative metallo-beta-lactamase family protein TERM 1672 1623464 - 1623487 + gr 100 -5.4 -5.97575 | TTACCTGTGAGTTTT GAAGGAAGAT TGCG ATTTTTCTTC TTTTTTTTCTCAGTT TERM 1673 1623508 - 1623523 + gr 76 -6.2 -4.56133 | TTTCTCAGTTTTATT TTCTGA GTTT TCAGAA TTTTCCTTGTTGGAA ksgA 1624459 - 1623659 - | dimethyladenosine transferase TERM 1674 1623851 - 1623873 + gH 82 -9.4 -3.55801 | opp_overlap 1623810, overlap 1623810 TTTAAAACAATCTTT TAGAAAATTT TTG AAATTTTCTA TTTCGCAAAGTTCAT TERM 1675 1624466 - 1624511 + H 86 -6.5 -5.25803 | opp_overlap 1624466 TTTAACCATAAGAAA TAATTTTATCTAAAAATTCTT AATT AAGTCTTTTTAGGTAGAATTA TTTTTTGTAAAAATT TERM 1676 1624822 - 1624807 - g 86 -6.2 -5.35224 | overlap 1624802 CTTAGAAAAAGAAAA TGTTTC TCGT GAAACA ATAAAAATCAATTCT Cj1712 1624541 - 1625077 + | hypothetical protein Cj1713 1625100 - 1626170 + | putative radical SAM domain protein Cj1714 1626167 - 1626265 + | small hydrophobic protein TERM 1677 1626667 - 1626651 - f 82 -10.9 -2.62616 | overlap 1626654 TCAGCTGGGAGAGCA CAACGCT GGC AGCGTTG GGGTCAGCGGTTCGA TERM 1678 1627164 - 1627189 + G 71 -7.7 -3.53444 | gap 1, opp_overlap 1627164, overlap 1627165 AATTTTTGCGAAAAT TTTGCCTTG-GA AAA TCACAAGGCAAG TTTAAGAGCAGATAC TERM 1679 1627165 - 1627188 + G 70 -9 -2.71924 | gap 1, opp_overlap 1627164, overlap 1627164 ATTTTTGCGAAAATT TTGCCTTG-GA AAA TCACAAGGCAA GTTTAAGAGCAGATA Cj1715 1626807 - 1627337 + | putative acetyltransferase leuD 1627919 - 1627317 - | isopropylmalate isomerase small subunit leuC 1629333 - 1627921 - | isopropylmalate isomerase large subunit leuB 1630396 - 1629320 - | 3-isopropylmalate dehydrogenase TERM 1680 1629833 - 1629847 + g 81 -2.8 -5.82036 | TAAAACATTCGCCTT GTCGAT TAA ATGGAC TTTTTTCTTTCTTAT leuA 1631928 - 1630393 - | 2-isopropylmalate synthase Cj1720 1632248 - 1632877 + | hypothetical protein TERM 1681 1632895 - 1632857 - T 76 -6.3 -4.60487 | gap 1, opp_overlap 1632857 1632856 1632859 GATGATGTTGAAAAA TACTTTATCGGT-GGA GGTTGAAA TCCTACCGATAAAATA CTTCATTAAAATTTA Cj1721c 1633545 - 1632901 - | putative outer membrane protein TERM 1682 1633767 - 1633740 - R 75 -4.2 -5.17576 | gap 1, opp_overlap 1633753, overlap 1633749 TAGGAATCTAAAAAA GAGCGAAA-ACAC AGA GTGGATTTCACTC TTTGTAAAAAGTTCA TERM 1683 1633771 - 1633749 - R 74 -6.3 -4.39347 | opp_overlap 1633753, overlap 1633740 AAAAAAGAGCGAAAA CACAGAGTG GATTT CACTCTTTG TAAAAAGTTCAAATC Cj1722c 1633892 - 1633791 - | hypothetical protein Cj1723c 1634119 - 1633895 - | putative periplasmic protein TERM 1684 1634209 - 1634197 - R 76 -3.5 -5.48623 | overlap 1634191 AAAGAGAAATAAAAA TATTT TAA AAATA GCTATAAATTTAAGA Cj1724c 1634679 - 1634296 - | 7-cyano-7-deazaguanine reductase TERM 1685 1634553 - 1634540 - G 72 -6.7 -4.10453 | TAAATCGTTGCAAAA TCAGG ATAA CCTGA ACGCGGACAACAACA Cj1725 1634839 - 1635438 + | putative periplasmic protein TERM 1686 1635470 - 1635440 - T 70 -7.7 -3.58533 | opp_overlap 1635448 1635465, overlap 1635443 1635448 CTACAAGGGTTTAAA TCATCAAAGCACA AAAGG TGTGCTTTGATAC ACATCATAATTGAGC TERM 1687 1635467 - 1635443 - T 87 -11.6 -2.9162 | opp_overlap 1635448 1635465, overlap 1635440 1635448 CAAGGGTTTAAATCA TCAAAGCACA AAAGG TGTGCTTTGA TACACATCATAATTG metA 1636324 - 1635443 - | homoserine O-succinyltransferase metB 1637678 - 1636407 - | putative O-acetylhomoserine (thiol)-lyase TERM 1688 1637805 - 1637791 - R 87 -11.4 -3.3071 | ATACGAGTAGATTAA GCGTGC CAA GCACGC ATACAGAAAGAAGAA TERM 1689 1637917 - 1637901 - R 85 -5.3 -5.42198 | overlap 1637896 1637908 CTTTAAAAAATAAAA TTAAAAT TAA ATTTTAA AAAATTTATATCACA TERM 1690 1637986 - 1637943 - R 83 -8.4 -4.10657 | gap 1, overlap 1637944 TCACATTGCTGAAAA TTTTATTGC-AACCCACCCCT AGC AAGAGTGAGTTAGCAATAAAT TGAAGGCAGTTCAAG TERM 1691 1637985 - 1637944 - R 90 -11.9 -3.06073 | gap 1, overlap 1637943 CACATTGCTGAAAAT TTTATTGC-AACCCACCCCT AGC AAGAGTGAGTTAGCAATAAA TTGAAGGCAGTTCAA Cj1728c 1638078 - 1637923 - | small hydrophobic protein TERM 1692 1638073 - 1638049 - G 73 -9.3 -2.70525 | opp_overlap 1638007 1638044, overlap 1638034 1638044 1638048 GGCTTGTAAAGCAAG GCTTGCTCCCT TAA AGGGAGCAAAA AACAATATTTTATAG flgE 1640701 - 1638104 - | flagellar hook protein FlgE TERM 1693 1638575 - 1638587 + g 76 -7.7 -4.00042 | TTTGATTTGTTGATT TGGTG CGG CACCA TTGTTTGGTGAGAAA TERM 1694 1639258 - 1639272 + g 76 -8.6 -3.44274 | opp_overlap 1639240 1639255 CATCCCAATAAGCTG CTGAAC CTG GTTCAG TTGGTCTTGTAGTTG ruvC 1641386 - 1640904 - | Holliday junction resolvase