TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.706892 %AT, 3231141 nt, 15419 terms. Intergenic: 0.757597 %AT, H2T: 647365 nt, 6552 terms; T2T: 118169 nt, 3088 terms; H2H: 155525 nt, 3362 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|169834533|ref|NC_010379.1| Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence (length 148780) CLD_A0001 1033 - 893 - | hypothetical protein TERM 1 920 - 952 + g 76 -3.6 -5.47431 | opp_overlap 920 921 ATAATATATAAAAAA GCAAATAGCT ATTTGAATTATTA AGCTATTTGC TTTTTTATATATTAC TERM 2 952 - 920 - G 76 -3.6 -5.48787 | opp_overlap 920, overlap 921 ATAATATATAAAAAA GCAAATAGCT ATTTGAATTATTA AGCTATTTGC TTTTTTATATATTAC CLD_A0002 1290 - 1063 - | hypothetical protein CLD_A0003 1649 - 2119 + | hypothetical protein TERM 3 2125 - 2158 + T 100 -17.1 -5.09762 | opp_overlap 2125 ACTTACGTAGAAAAA CTCTCCATATATAAT TTCA ATTATATATGGAGAG TTTTTCTATTAAACT TERM 4 2158 - 2125 - T 100 -17.1 -4.88067 | opp_overlap 2125 ACTTACGTAGAAAAA CTCTCCATATATAAT TTCA ATTATATATGGAGAG TTTTTCTATTAAACT CLD_A0004 2817 - 2173 - | hypothetical protein CLD_A0005 3069 - 2836 - | hypothetical protein TERM 5 2943 - 2957 + g 88 -5.8 -5.56568 | opp_overlap 2945, overlap 2928 2926 TAGCTGCATTTAATG TAGATA TAA TATCTA TTTTTTTAATAATAT TERM 6 3186 - 3147 - R 100 -17 -6.13503 | opp_overlap 3150 3154 TATTAACAAAAAAAA TAAGAAACTTTATTTAAA AATT TTTAAATAAAGTTTCTTA TTAAGCCATATTAAA TERM 7 3150 - 3183 + r 100 -14.3 -3.63341 | opp_overlap 3147, overlap 3154 TAACAAAAAAAATAA GAAACTTTATTTAAA AATT TTTAAATAAAGTTTC TTATTAAGCCATATT TERM 8 3154 - 3179 + r 93 -9.3 -4.44667 | opp_overlap 3147, overlap 3150 AAAAAAAATAAGAAA CTTTATTTAAA AATT TTTAAATAAAG TTTCTTATTAAGCCA ssb 3651 - 3205 - | single-strand binding protein TERM 9 3723 - 3745 + r 79 -9.9 -2.63858 | gap 1, opp_overlap 3723, overlap 3722 TTACAATGTCAATTA CTCACCGCCT ATAG AGGCGG-GAG CTTGTAACTCTACTA TERM 10 3745 - 3723 - R 80 -9.9 -2.76453 | gap 1, opp_overlap 3722 3723 TTACAATGTCAATTA CTCACCGCCT ATAG AGGCGG-GAG CTTGTAACTCTACTA TERM 11 3835 - 3856 + r 100 -11.7 -3.9243 | opp_overlap 3827 3837 3839 TTGACAACACCGCAA CATAGTGAG TTTA CTCACTATG TTCTTTGGAGAATTG TERM 12 3854 - 3837 - R 71 -8.5 -3.10474 | opp_overlap 3835, overlap 3827 3839 GACAACACCGCAACA TAGTGAG TTTA CTCACTA TGTTCTTTGGAGAAT CLD_A0007 4987 - 3845 - | transposase TERM 13 4708 - 4718 + g 71 -6.8 -4.00684 | opp_overlap 4707 4705 4708 CTAAAGTAAAATCAT GTCC ATT GGAC TTATTGGTTTTATAT CLD_A0008 6174 - 5146 - | cell wall-associated hydrolase TERM 14 6029 - 6048 + g 72 -6.6 -4.17698 | opp_overlap 6029 AATTTGATAGTTAAA TTAGATAA ATCA TTATCTAA TTTCTGTATCTCAAT CLD_A0009 6255 - 6440 + | hypothetical protein TERM 15 6438 - 6468 + T 84 -9.2 -3.79565 | opp_overlap 6438 6433 6441, overlap 6441 ATAGAAATAATTCAA TAATACAGATGAGT AAA ATCCATCTGTATTA TTTCAATCTCTTTAT TERM 16 6468 - 6438 - T 82 -9.2 -3.36299 | opp_overlap 6438 6441, overlap 6433 6441 ATAGAAATAATTCAA TAATACAGATGAGT AAA ATCCATCTGTATTA TTTCAATCTCTTTAT CLD_A0010 6858 - 6466 - | hypothetical protein CLD_A0011 7020 - 6880 - | hypothetical protein CLD_A0012 7565 - 7110 - | hypothetical protein CLD_A0013 7697 - 8287 + | metal dependent phosphohydrolase TERM 17 8362 - 8413 + T 100 -19.2 -2.72916 | opp_overlap 8367, overlap 8367 TATTTCTTATAATAT AAAAAGGGCAATAACACTTATG ATTAAAGA CATAAGTGTTATTGCCCTTTTA CTCTTATTGTATATT TERM 18 8408 - 8367 - T 100 -19.1 -5.1523 | opp_overlap 8362 8367 CTTATAATATAAAAA GGGCAATAACACTTATG ATTAAAGA CATAAGTGTTATTGCCC TTTTACTCTTATTGT TERM 19 8367 - 8408 + T 100 -19.1 -4.50841 | opp_overlap 8367, overlap 8362 CTTATAATATAAAAA GGGCAATAACACTTATG ATTAAAGA CATAAGTGTTATTGCCC TTTTACTCTTATTGT dnaX 9835 - 8417 - | DNA polymerase III, subunits gamma and tau TERM 20 9367 - 9391 + g 70 -8.6 -2.66787 | opp_overlap 9367 9366 9364, overlap 9371 ATAATATAGTAATAG GCAACTTCTG TGGAT CAGTAGTTGC TAATATAAATATTAC TERM 21 9391 - 9367 - G 70 -8.6 -2.55205 | opp_overlap 9367 9371, overlap 9366 9364 ATAATATAGTAATAG GCAACTTCTG TGGAT CAGTAGTTGC TAATATAAATATTAC TERM 22 9915 - 9945 + r 100 -14.2 -6.13 | opp_overlap 9915 TTCAAAATTTTAAAA TACCTTAACAGCAC TTA GTACTGTTAAGGTA TTTTTTTTTAGATAT TERM 23 9945 - 9915 - R 100 -16.4 -4.28049 | opp_overlap 9915 TTCAAAATTTTAAAA TACCTTAACAGCAC TTA GTACTGTTAAGGTA TTTTTTTTTAGATAT CLD_A0015 10134 - 9919 - | hypothetical protein TERM 24 10043 - 10071 + g 72 -7.7 -3.67285 | opp_overlap 10038 10037, overlap 10034 10032 ACTTCATAATTTGAA TTTGAATATATAA CAT TTTTATATTCAAA TTTAACATATATTGT CLD_A0016 10292 - 10149 - | hypothetical protein CLD_A0017 11325 - 10342 - | DNA polymerase III delta subunit superfamily protein TERM 25 10399 - 10369 - G 93 -11.4 -3.37537 | opp_overlap 10367 CAGCTTAAAACTTAA TTCTTCTAATACTA TAT TAGGATTAGAAGAA AACTTAATTCTAGTT TERM 26 11043 - 11059 + g 71 -2.2 -5.33985 | overlap 11044 CTGGAATACTCTTCA AGGCTT TCAGC AAGCCA TTTATTTTTTTTGCC TERM 27 11268 - 11293 + g 100 -9.2 -4.70107 | opp_overlap 11256 11267 AAGCTGTTACATTAT CAGTAATAAG TAAAAT CTTATTACTG TTTATTGTTTTAATA CLD_A0018 11904 - 11344 - | hypothetical protein TERM 28 12007 - 11982 - R 100 -11.3 -6.09196 | opp_overlap 11982 TCCAAAATAAAAAAA GTTGCGGTTAT TCCC ATAACCACAAC TTTATATATACTTTT TERM 29 11982 - 12007 + r 84 -9.1 -4.19927 | opp_overlap 11982 TCCAAAATAAAAAAA GTTGCGGTTAT TCCC ATAACCACAAC TTTATATATACTTTT CLD_A0019 12644 - 12036 - | hypothetical protein TERM 30 12782 - 12754 - R 82 -5.4 -5.55769 | opp_overlap 12754 GCCCACAACAAAAAA GAGCACTGAT TTCTTAACT ATCAGTACTC TTTTTGTTAAATAAC CLD_A0020 13377 - 12820 - | hypothetical protein TERM 31 13411 - 13432 + r 91 -10.3 -3.79565 | opp_overlap 13411 TCTTTGTATAAAGAA TGCTAAGTT AATT AACTTAGCA TTTACCTATGTTTAT TERM 32 13432 - 13411 - R 95 -10.3 -4.06419 | opp_overlap 13411 TCTTTGTATAAAGAA TGCTAAGTT AATT AACTTAGCA TTTACCTATGTTTAT CLD_A0021 13697 - 13506 - | hypothetical protein CLD_A0022 14068 - 13808 - | hypothetical protein CLD_A0023 14420 - 14157 - | hypothetical protein CLD_A0024 14658 - 14470 - | PhnB protein TERM 33 14821 - 14842 + r 95 -10.3 -4.11623 | opp_overlap 14821 TTTTTTTATAAGAAA TGCTAAGTT AATT AACTTAGCA TTTAGTTTAATCATC TERM 34 14842 - 14821 - R 95 -10.3 -4.30719 | opp_overlap 14821 TTTTTTTATAAGAAA TGCTAAGTT AATT AACTTAGCA TTTAGTTTAATCATC CLD_A0025 15088 - 14849 - | hypothetical protein CLD_A0026 15498 - 15160 - | hypothetical protein TERM 35 15569 - 15542 - R 71 -7.2 -3.83998 | gap 1, opp_overlap 15545, overlap 15545 TTATTTCATATTAAA CAAGTATAATGGC ATA GCC-TTATACTTA AATATTATAATATTT TERM 36 15566 - 15545 - R 71 -6.7 -4.04806 | gap 1, opp_overlap 15545, overlap 15542 TTTCATATTAAACAA GTATAATGGC ATA GCC-TTATAC TTAAATATTATAATA CLD_A0027 15926 - 15567 - | hypothetical protein TERM 37 16030 - 16011 - R 90 -5.8 -5.95539 | opp_overlap 16011 TGCGAAATAAAAAAA TCAGATAT AAAA ATACCTGA TTTAATATTCTAAGT CLD_A0028 16315 - 16040 - | hypothetical protein TERM 38 16447 - 16470 + r 72 -6.2 -4.48175 | opp_overlap 16447 TATAATATATAAGGA GTTGTAAATT TTTA AATTTATAAC TTTTCCTTAAATTTT TERM 39 16526 - 16501 - R 95 -12.1 -3.47617 | opp_overlap 16501, overlap 16505 AGCTTAAAGCCATAA GAAAGAGTATT AATT AATACTCTTTC TTTTTTATATTATAC TERM 40 16501 - 16526 + r 100 -12.1 -5.5208 | opp_overlap 16501 16505 AGCTTAAAGCCATAA GAAAGAGTATT AATT AATACTCTTTC TTTTTTATATTATAC TERM 41 16522 - 16505 - R 75 -7.1 -4.37211 | opp_overlap 16501, overlap 16501 TAAAGCCATAAGAAA GAGTATT AATT AATACTC TTTCTTTTTTATATT CLD_A0029 16693 - 16514 - | hypothetical protein TERM 42 16705 - 16742 + r 100 -8.7 -5.43974 | opp_overlap 16705 CCATCAAATGAAAAA TAAGGTACCATATATAA TTAT TTACATATAGTACCTTA TTTTTATTTGCTTTT TERM 43 16742 - 16705 - R 100 -13.1 -5.01811 | opp_overlap 16705 CCATCAAATGAAAAA TAAGGTACCATATATAA TTAT TTACATATAGTACCTTA TTTTTATTTGCTTTT CLD_A0030 17099 - 16746 - | hypothetical protein CLD_A0031 17754 - 17119 - | phage protein TERM 44 17419 - 17448 + g 75 -7.4 -4.09108 | opp_overlap 17418 TTTATTTATATAATC TTTTGTGTAAAA ATAATC TTTTGCACAAAA TTTATGTCCGTTAAA TERM 45 17999 - 18040 + r 93 -9.5 -4.40894 | opp_overlap 18002, overlap 18002 TTATCCATCCATACA AAAGGGGCTTGCGACTAAA ATTA TGTAGTCACAAGTCCCTTA TTTTAATATAATTTC TERM 46 18037 - 18002 - R 100 -11.2 -4.55287 | opp_overlap 18002 17999 TCCATCCATACAAAA GGGGCTTGCGACTAAA ATTA TGTAGTCACAAGTCCC TTATTTTAATATAAT TERM 47 18002 - 18037 + r 100 -11.2 -4.29905 | opp_overlap 18002, overlap 17999 TCCATCCATACAAAA GGGGCTTGCGACTAAA ATTA TGTAGTCACAAGTCCC TTATTTTAATATAAT CLD_A0032 19636 - 18086 - | TPR repeat-containing protein CLD_A0033 21135 - 19726 - | HD domain-containing protein TERM 48 21471 - 21435 - R 93 -10.2 -4.12532 | opp_overlap 21432 CCCTCCACATATAAA GGGACTTGCAACTAAA ATACA TATAGCTGCAGGTCCC TAATCATTATTCTAT CLD_A0034 22071 - 21478 - | putative guanylate kinase CLD_A0035 22319 - 22092 - | hypothetical protein TERM 49 22179 - 22208 + g 80 -2.3 -5.73339 | ATTACCTTGTAATTC TATAGTTAATTTA TAAT TAAACCAACTATA TTTTTTTATAATTAT TERM 50 22568 - 22537 - R 73 -3.2 -5.47431 | gap 1 TTAATATACAAAAAA CTAGGTATCCTTA TATAGAT TAAAGA-ACCTAG TTTTAGATATTATTT TERM 51 22699 - 22660 - R 77 -8.8 -3.37354 | opp_overlap 22665, overlap 22665 22669 GACATTTATTTATAA GAAAATAAAGCGATGCAG TTAA CTACACCACTTTATTTTT ATTATTATTTTAAAT TERM 52 22694 - 22665 - R 93 -8.7 -4.79352 | opp_overlap 22665, overlap 22660 22669 TTATTTATAAGAAAA TAAAGCGATGCAG TTAA CTACACCACTTTA TTTTTATTATTATTT TERM 53 22690 - 22669 - R 72 -5.1 -4.92812 | opp_overlap 22665, overlap 22665 22660 TTATAAGAAAATAAA GCGATGCAG TTAA CTACACCAC TTTATTTTTATTATT TERM 54 22745 - 22760 + r 72 -7.6 -3.62816 | TTTCTTTAAATTTTA CAGTCA TAGT TGACTG TTCTAATTCTCTTTC CLD_A0036 23577 - 22822 - | hypothetical protein TERM 55 23063 - 23082 + g 89 -6.6 -5.37865 | opp_overlap 23062 TTCTGAGCATTAATG GAAAATAA TATT TTATTTTC TTTTTTACTTCTTAC TERM 56 23604 - 23614 + r 73 -2.6 -5.73978 | overlap 23598 CTAATTTTAGCTTTT TAAA GCC TTTA TTTTTTATTTATACT TERM 57 23693 - 23680 - R 72 -3.9 -5.32882 | opp_overlap 23680 TATTATTACAAAAAA TAGTA ATCG TACTA ATTTCTCATTTTTAT CLD_A0037 23875 - 23753 - | hypothetical protein TERM 58 24021 - 24077 + r 95 -10 -4.32882 | gap 1, opp_overlap 24027 24031 24034, overlap 24021 24023 24024 TATTCCTCCATTTTC TAA-TTATAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTATAAATTC TATTTTATTTTTTAA TERM 59 24023 - 24074 + r 100 -14.2 -4.1922 | opp_overlap 24027 24031 24034, overlap 24021 24021 24024 TTCCTCCATTTTCTA ATTATAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTATAAA TTCTATTTTATTTTT TERM 60 24024 - 24073 + r 100 -17.7 -3.07871 | opp_overlap 24027 24031 24034, overlap 24023 24021 24021 TCCTCCATTTTCTAA TTATAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTATAA ATTCTATTTTATTTT TERM 61 24070 - 24027 - R 90 -12.8 -2.71731 | opp_overlap 24024 24023 24021 24021, overlap 24031 24034 TCCATTTTCTAATTA TAAAGAAGGTGTTATATC ATTTCGCA GATATAGCACCTTCTTTA TAAATTCTATTTTAT TERM 62 24066 - 24031 - R 86 -9.2 -4.05446 | opp_overlap 24024 24023 24021 24021, overlap 24027 24034 TTTTCTAATTATAAA GAAGGTGTTATATC ATTTCGCA GATATAGCACCTTC TTTATAAATTCTATT CLD_A0038 24906 - 24136 - | DNA modification methylase TERM 63 24615 - 24648 + g 73 -5.5 -4.64676 | opp_overlap 24619 24636, overlap 24617 24619 CTAGCATAGGATCAC AAAATTCTTTTACAT TATA ATGTAAAAGAATATC TTTTATTAGAAGTCC TERM 64 24617 - 24646 + g 79 -8.1 -3.93768 | opp_overlap 24619 24636, overlap 24615 24619 AGCATAGGATCACAA AATTCTTTTACAT TATA ATGTAAAAGAATA TCTTTTATTAGAAGT TERM 65 24619 - 24644 + g 90 -10.7 -3.55261 | opp_overlap 24619 24636, overlap 24617 24615 CATAGGATCACAAAA TTCTTTTACAT TATA ATGTAAAAGAA TATCTTTTATTAGAA TERM 66 24644 - 24619 - G 100 -10.7 -4.49981 | opp_overlap 24619 24617 24615, overlap 24636 CATAGGATCACAAAA TTCTTTTACAT TATA ATGTAAAAGAA TATCTTTTATTAGAA TERM 67 25029 - 25004 - R 74 -4.8 -5.25893 | opp_overlap 24999 25004 ATATATATTAAAAAA GCATAAAGGT AATAAA ATCTTTATGC TTTAATTCTTTCGTT TERM 68 25004 - 25029 + r 73 -7 -4.17274 | opp_overlap 25004, overlap 24999 ATATATATTAAAAAA GCATAAAGGT AATAAA ATCTTTATGC TTTAATTCTTTCGTT CLD_A0039 26448 - 25024 - | DNA primase TERM 69 26042 - 26013 - G 72 -8.1 -3.35775 | opp_overlap 26014, overlap 26011 26014 AGCAGCTTGTAAATA TTTCATATACTTT ATTT AAAGTATATGAAT TTGCTTTAATGCTCT TERM 70 26014 - 26041 + g 100 -11.6 -4.11623 | opp_overlap 26014 26013 26011 GCAGCTTGTAAATAT TTCATATACTTT ATTT AAAGTATATGAA TTTGCTTTAATGCTC TERM 71 26041 - 26014 - G 85 -11.6 -2.61144 | opp_overlap 26014, overlap 26013 26011 GCAGCTTGTAAATAT TTCATATACTTT ATTT AAAGTATATGAA TTTGCTTTAATGCTC TERM 72 26657 - 26694 + H 75 -7.3 -4.21989 | opp_overlap 26690 ACAAATCGACCTGAA TGTTATATATTTATAAC ATAA GATAAAAATATATAACA TTTGTTAAAATTATA CLD_A0040 26728 - 27120 + | hypothetical protein CLD_A0041 27122 - 27334 + | hypothetical protein TERM 73 27457 - 27489 + T 78 -7.9 -4.20024 | opp_overlap 27457, overlap 27452 TTAAGAAAACAAAAA GTGATAATTAGATAT TTG ATACCTAACTATCAC TTTCATATTTTTTAT TERM 74 27489 - 27457 - T 100 -12.3 -5.62288 | opp_overlap 27457 27452 TTAAGAAAACAAAAA GTGATAATTAGATAT TTG ATACCTAACTATCAC TTTCATATTTTTTAT CLD_A0042 27845 - 27528 - | hypothetical protein TERM 75 28042 - 28056 + r 74 -8.6 -3.46965 | AACATATTTAATTGC TCACAG TAT CTGTGA TTATCCTCCTATGTT CLD_A0043 28366 - 28106 - | hypothetical protein TERM 76 28179 - 28189 + g 74 -6.8 -4.35017 | opp_overlap 28179 ATTTCTTTTAACTTA TCCC ATT GGGA TTTATTAAATTTTTG TERM 77 28397 - 28419 + r 77 -7.6 -4.11183 | GCATTAATTTCAGGT GCAGTCCCTG GTC CTGTGACTGC TTCTTTGTAATGCGA CLD_A0044 28887 - 28435 - | hypothetical protein CLD_A0045 29581 - 28916 - | hypothetical protein CLD_A0046 29945 - 29664 - | hypothetical protein CLD_A0047 30371 - 30024 - | hypothetical protein TERM 78 30169 - 30182 + g 81 -2.5 -5.80003 | opp_overlap 30169 30179, overlap 30179 GATTCATCTTCAAGA TTTAT ATAC ATAAA TTTTTTATTTATTCC TERM 79 30569 - 30542 - R 79 -8.8 -3.66378 | opp_overlap 30540 30538 30542 TATATTTTATCCAAA TTTAAAAATATT CCAT AATATTTTTAAA TATATTATTATTTAT TERM 80 30542 - 30569 + r 77 -8.8 -3.39439 | opp_overlap 30542, overlap 30540 30538 TATATTTTATCCAAA TTTAAAAATATT CCAT AATATTTTTAAA TATATTATTATTTAT CLD_A0048 30876 - 30577 - | putative sodium/alanine symporter family protein TERM 81 31137 - 31109 - R 77 -7.6 -4.07568 | opp_overlap 31109 31108 31103 31124 CTCCTTCTTTTAAAA TCCTATAAGC TTGTGTAGT GCTTATAGGA CTATTAATTCCTTTT CLD_A0049 31587 - 31390 - | hypothetical protein CLD_A0050 32172 - 31708 - | hypothetical protein CLD_A0051 32354 - 32193 - | hypothetical protein CLD_A0052 32887 - 32411 - | hypothetical protein CLD_A0053 33828 - 32974 - | C-5 cytosine-specific DNA methylase CLD_A0054 33997 - 33833 - | hypothetical protein CLD_A0055 35082 - 34267 - | hypothetical protein CLD_A0056 35539 - 35168 - | hypothetical protein CLD_A0057 36596 - 35688 - | hypothetical protein CLD_A0058 37014 - 36799 - | hypothetical protein CLD_A0059 37391 - 37101 - | hypothetical protein CLD_A0060 37595 - 37419 - | hypothetical protein CLD_A0061 38226 - 37606 - | ATPase CLD_A0062 39048 - 38284 - | DNA methylase CLD_A0063 39537 - 39079 - | hypothetical protein CLD_A0064 39965 - 39609 - | hypothetical protein CLD_A0065 40211 - 40026 - | hypothetical protein CLD_A0066 40395 - 40228 - | hypothetical protein CLD_A0067 40643 - 40431 - | hypothetical protein TERM 82 40772 - 40813 + r 83 -7.6 -4.59342 | opp_overlap 40761 40777, overlap 40777 ATAATTTTTATTATA AAAAACACTAGTAAATTT AATATA AAATTTACTAGTGTTGTA TTTCTTTATGATAAA TERM 83 40808 - 40777 - R 100 -11.9 -5.31275 | opp_overlap 40772 40777 TTTTATTATAAAAAA CACTAGTAAATTT AATATA AAATTTACTAGTG TTGTATTTCTTTATG TERM 84 40777 - 40808 + r 100 -11.9 -4.05321 | opp_overlap 40777, overlap 40772 TTTTATTATAAAAAA CACTAGTAAATTT AATATA AAATTTACTAGTG TTGTATTTCTTTATG TERM 85 40975 - 41008 + r 77 -7.7 -4.18018 | overlap 40973 40976 ATACTGTCACTTATA TCATTGATAGTATTA ATCA TAGTATTATCAATGG TTTTACCTAAACAAA TERM 86 40976 - 41007 + r 74 -9 -3.10597 | overlap 40973 40975 TACTGTCACTTATAT CATTGATAGTATTA ATCA TAGTATTATCAATG GTTTTACCTAAACAA TERM 87 41138 - 41105 - R 100 -7 -6.07374 | ACAAAAAATAAAAAA GTGTAAATACAT ACCTTCACAA ATGTATTTACAC TTAAACTGAGAAATA boNT/B 46192 - 42317 - | botulinum neurotoxin type B TERM 88 42833 - 42848 + g 76 -7.6 -3.91294 | opp_overlap 42833 42832 GCTACGTGTTAAAAT TTCACC TACA GGTGAA TCTTTCTTTAGTTTA ntnh 49811 - 46218 - | botulinum neurotoxin type B nontoxic-nonhemagglutinin subunit TERM 89 47314 - 47301 - G 71 -3.1 -5.33026 | TAATGTAAATAAAAA CAGAT TATA ATCCG ACTCTTTTTCTTCTT botR 50509 - 49973 - | transcriptional regulator BotR, P-21 TERM 90 50052 - 50062 + g 72 -4 -5.14477 | TATACAGATTGACGA CTTA TAT TAAG TTTTTTAGCTATATC ha33 50736 - 51620 + | hemagglutinin component HA33 ha17 51683 - 52123 + | haemagglutinin component HA17 TERM 91 52710 - 52693 - g 81 -2.8 -5.71712 | TCCTATATAAAAAAA TTTTAG AAACTA CTAAAA ATATACCAACTAACA ha70 52137 - 54017 + | haemagglutinin component HA70 TERM 92 54063 - 54106 + T 95 -9.3 -4.82901 | gap 2, opp_overlap 54063 54062 54074 54075 CACCAGCTTATGAAG TGCA-CTCC-AAAGTTTAGAT AAAG ATCTAAATTTTTGGAGGTGCA TTTTTGTGACAAAGA TERM 93 54162 - 54148 - T 73 -7.2 -4.06055 | opp_overlap 54148 ACTTTTCAAATTAAA GCTATA GTA TATAGC TTTTCTAACAAGGAA TERM 94 54148 - 54162 + T 75 -7.2 -4.36914 | opp_overlap 54148 ACTTTTCAAATTAAA GCTATA GTA TATAGC TTTTCTAACAAGGAA TERM 95 54649 - 54623 - T 100 -9 -5.60993 | opp_overlap 54622 54627 TTTTTTATAAAAAAA TAAAGTAATTCA ATT TAAATTACTTTA CTTAAATAAGCCTTA CLD_A0074 55098 - 54841 - | hypothetical protein TERM 96 55312 - 55291 - H 76 -2.4 -5.88197 | gap 1 TTAAACACAAAAAAA GCATA-GAA ATAAA TTCATATGC CATAGCAACTTATAT TERM 97 56592 - 56604 + G 72 -7.7 -3.56864 | overlap 56588 56590 CAGATAATACTTCTG GCATC CCT GATGC TGTTTATGGGATTTT CLD_A0075 55571 - 57058 + | hypothetical protein TERM 98 57071 - 57099 + F 100 -9.6 -5.60993 | opp_overlap 57071 TAAATAATTACCAAA TACTCCCCTACC TATCT GGTGTGGGAGTA TTTTTTTATAAAGAA TERM 99 57099 - 57071 - f 71 -7.4 -3.90738 | opp_overlap 57071 TAAATAATTACCAAA TACTCCCCTACC TATCT GGTGTGGGAGTA TTTTTTTATAAAGAA TERM 100 57544 - 57578 + F 84 -5 -5.70829 | opp_overlap 57544 ACTAGTGATTATATA GTGTTCTAAAAAAGTG TTT CACTTTTGTCGTGCAC TTTTTTTATAATATT TERM 101 57649 - 57666 + F 77 -7.1 -4.52143 | ACTTTTGTCGTGCAC TTTTGTC ATTA GACAAAA TTTATTCTATTTGCA TERM 102 57950 - 57938 - g 85 -3.5 -5.68039 | AAAGTCATAAAAAAA TATAA CAT TTATA GTAACATAAATATTG CLD_A0076 57731 - 58768 + | hypothetical protein TERM 103 58813 - 58855 + T 91 -10.5 -3.54304 | gap 1, opp_overlap 58835, overlap 58824 58825 58826 58827 58835 AAATTTTATTATTCA TTAT-TTACAAATAATATAA AAAC TTATATTATTTGTAATATAA GTTTTTATAAATTGC TERM 104 58825 - 58866 + T 70 -7.7 -3.34506 | opp_overlap 58835, overlap 58824 58813 58826 58827 58835 TCATTATTTACAAAT AATATAAAAACTTATATTA TTTG TAATATAAGTTTTTATAAA TTGCTCTCATTATCT TERM 105 58826 - 58865 + T 83 -11.2 -2.59981 | opp_overlap 58835, overlap 58824 58813 58825 58827 58835 CATTATTTACAAATA ATATAAAAACTTATATTA TTTG TAATATAAGTTTTTATAA ATTGCTCTCATTATC TERM 106 58835 - 58856 + T 90 -7.5 -4.92314 | opp_overlap 58835, overlap 58827 58824 58813 58826 58825 CAAATAATATAAAAA CTTATATTA TTTG TAATATAAG TTTTTATAAATTGCT TERM 107 58856 - 58835 - T 93 -7.5 -5.23765 | opp_overlap 58827 58824 58813 58835 58826 58825 CAAATAATATAAAAA CTTATATTA TTTG TAATATAAG TTTTTATAAATTGCT TERM 108 59264 - 59207 - T 100 -18.9 -4.67982 | opp_overlap 59216, overlap 59210 59216 TTGCATTTAATAAAA CACTTAAAAGGGGCTGTAATTTAGTTT TTAT AAACTAAATTACAGCCCCTTTTATAAA ACTAACTTAAAATTA TERM 109 59261 - 59210 - T 100 -25 -2.96609 | opp_overlap 59216, overlap 59207 59216 CATTTAATAAAACAC TTAAAAGGGGCTGTAATTTAGTTT TTAT AAACTAAATTACAGCCCCTTTTAT AAAACTAACTTAAAA TERM 110 59255 - 59216 - T 100 -24 -4.36485 | opp_overlap 59216, overlap 59210 59207 ATAAAACACTTAAAA GGGGCTGTAATTTAGTTT TTAT AAACTAAATTACAGCCCC TTTTATAAAACTAAC TERM 111 59216 - 59255 + T 100 -24 -4.38712 | opp_overlap 59216 59210 59207 ATAAAACACTTAAAA GGGGCTGTAATTTAGTTT TTAT AAACTAAATTACAGCCCC TTTTATAAAACTAAC CLD_A0077 59569 - 59258 - | hypothetical protein CLD_A0078 59781 - 59572 - | DNA-directed RNA polymerase subunit alpha spoIIID 60050 - 59802 - | sporulation transcriptional regulator spoiiid TERM 112 60150 - 60126 - R 100 -13.1 -5.69262 | opp_overlap 60126 TTACAAAAATAAAAA CTAGGTATATA TTT TATATACCTAG TTTCACAAATTTATT TERM 113 60126 - 60150 + r 100 -13.1 -3.60475 | opp_overlap 60126 TTACAAAAATAAAAA CTAGGTATATA TTT TATATACCTAG TTTCACAAATTTATT CLD_A0080 60499 - 60161 - | hypothetical protein TERM 114 60621 - 60606 - H 72 -4.8 -5.03713 | opp_overlap 60606 AATAAGTAAATAAAA GTATTT TTTT AAATAC TTCAATATCTATTGT CLD_A0081 60915 - 61145 + | hypothetical protein TERM 115 61125 - 61182 + T 100 -18.5 -3.80877 | gap 1, opp_overlap 61132 61137, overlap 61132 61137 AAAATTTATTCTATA TTTAAAAGAAAAGACTATTAATGATAAT TTC AATA-CATTAATAGTCTTTTCTTTTAAA TATTTTATAAACTAC TERM 116 61175 - 61132 - T 100 -12.2 -4.23758 | gap 1, opp_overlap 61125 61132 61137, overlap 61137 ATTCTATATTTAAAA GAAAAGACTATTAATGATAAT TTC AATA-CATTAATAGTCTTTTC TTTTAAATATTTTAT TERM 117 61132 - 61175 + T 100 -12.2 -4.36485 | gap 1, opp_overlap 61132 61137, overlap 61125 61137 ATTCTATATTTAAAA GAAAAGACTATTAATGATAAT TTC AATA-CATTAATAGTCTTTTC TTTTAAATATTTTAT TERM 118 61137 - 61170 + T 80 -6.3 -5.11836 | gap 1, opp_overlap 61132 61137, overlap 61132 61125 ATATTTAAAAGAAAA GACTATTAATGATAAT TTC AATA-CATTAATAGTC TTTTCTTTTAAATAT TERM 119 61170 - 61137 - T 80 -6.3 -5.11836 | gap 1, opp_overlap 61137 61132 61125, overlap 61132 ATATTTAAAAGAAAA GACTATTAATGATAAT TTC AATA-CATTAATAGTC TTTTCTTTTAAATAT CLD_A0082 61504 - 61187 - | cell wall binding repeat-containing protein TERM 120 61262 - 61279 + g 70 -3.5 -5.06103 | TTTACTTGATTGATT GTTTTTA TTAA TAGAAAC TTTTTTAGGAGTTGT CLD_A0083 62549 - 61482 - | hypothetical protein TERM 121 62380 - 62394 + g 71 -5.8 -4.39989 | opp_overlap 62382 AAATATTTACCATTA TACTTT ATT AAAGTA TTTTCATCATTTAAT TERM 122 62700 - 62660 - R 77 -6.5 -4.59117 | opp_overlap 62666, overlap 62698 AAATCAATGATAAAA CAATTATAAAACATTTAAA GTT TTTTTATGTTTTATAATTA AAATAATAATATTTT TERM 123 62798 - 62758 - R 100 -12.3 -4.51699 | opp_overlap 62766, overlap 62733 62760 62766 ATAATGATTATAAAA CATTAAAACACAATATAAA TAC TTTATAATGTGTTTTAATA AGTAAAAATAGATTT TERM 124 62796 - 62760 - R 100 -12.7 -3.85857 | opp_overlap 62766, overlap 62733 62758 62766 AATGATTATAAAACA TTAAAACACAATATAAA TAC TTTATAATGTGTTTTAA TAAGTAAAAATAGAT TERM 125 62766 - 62790 + r 75 -7.3 -4.2828 | opp_overlap 62760 62758 62766 TATAAAACATTAAAA CACAATATAAA TAC TTTATAATGTG TTTTAATAAGTAAAA TERM 126 62790 - 62766 - R 79 -7.3 -4.58236 | opp_overlap 62766, overlap 62760 62758 TATAAAACATTAAAA CACAATATAAA TAC TTTATAATGTG TTTTAATAAGTAAAA TERM 127 62893 - 62925 + r 79 -5 -5.45802 | opp_overlap 62894, overlap 62894 TAAAAACTTTAAAAA ACTGCTACATTTAT CATTT ATAAATGTAACAGC TTTTTGTTTTAAGAG TERM 128 62924 - 62894 - R 100 -10.7 -5.16472 | opp_overlap 62894 62893 AAAAACTTTAAAAAA CTGCTACATTTAT CATTT ATAAATGTAACAG CTTTTTGTTTTAAGA TERM 129 62894 - 62924 + r 78 -8.5 -3.86397 | opp_overlap 62894, overlap 62893 AAAAACTTTAAAAAA CTGCTACATTTAT CATTT ATAAATGTAACAG CTTTTTGTTTTAAGA CLD_A0084 63743 - 62934 - | hypothetical protein TERM 130 62998 - 62978 - G 70 -6.3 -4.13872 | AGTGAATTACATAAA CTATTATAA TAA TTACAATAG TACAGGATATTACTT TERM 131 63706 - 63742 + g 81 -8.4 -4.2237 | opp_overlap 63716 TTATTCATGATAGTT TGATATTTAATATATA GTTTA TATACATTAAATATCA TTTTGCACTTCCTTT TERM 132 63789 - 63810 + r 73 -7.9 -3.70109 | opp_overlap 63788 63789, overlap 63790 GTTAATTACTGAAAC TCCCAAGCC TAAA GGCATGGGG TTCTTAGGTACTATA TERM 133 63790 - 63809 + r 76 -9.2 -2.81584 | opp_overlap 63788 63789, overlap 63789 TTAATTACTGAAACT CCCAAGCC TAAA GGCATGGG GTTCTTAGGTACTAT TERM 134 64021 - 64040 + r 75 -9.2 -2.7264 | opp_overlap 64036, overlap 64020 64034 TATTGTGCTATCCAT CCCACACC TAAA GGAGTGGG CTTTCCGCACAGTTT CLD_A0085 64847 - 64182 - | hypothetical protein TERM 135 64770 - 64805 + g 70 -5 -4.66456 | opp_overlap 64765 64779, overlap 64765 64774 64775 64779 ATCTTTTAAATTGTC TATGTTAAACAATATA TCGG TATATTGTTTACTGTA TTTCTCTTTTTCTTT TERM 136 64775 - 64800 + g 73 -9.3 -2.67192 | opp_overlap 64765 64779, overlap 64765 64774 64770 64779 TTAAATTGTCTATGT TAAACAATATA TCGG TATATTGTTTA CTGTATTTCTCTTTT TERM 137 64932 - 64967 + r 100 -10.7 -4.4267 | opp_overlap 64932 AATTCTATAGGAAAA GACACTAATTACCTT ATTAAA AAGCTAATTAGTGTC TTTTAGATTTTAAAA TERM 138 64967 - 64932 - R 95 -10.7 -4.35518 | opp_overlap 64932 AATTCTATAGGAAAA GACACTAATTACCTT ATTAAA AAGCTAATTAGTGTC TTTTAGATTTTAAAA CLD_A0086 65756 - 65004 - | hypothetical protein TERM 139 65824 - 65807 - R 91 -8.5 -5.00616 | opp_overlap 65807 TTGTGTTCTAAAAAA TCCTTCT AAAT AGAAGGA TTTTTTAATTAAGAT TERM 140 65807 - 65824 + r 100 -8.5 -5.27477 | opp_overlap 65807 TTGTGTTCTAAAAAA TCCTTCT AAAT AGAAGGA TTTTTTAATTAAGAT CLD_A0087 66471 - 65833 - | phage shock protein A CLD_A0088 67292 - 66594 - | hypothetical protein TERM 141 66902 - 66916 + g 81 -5.8 -5.20633 | TAATTTCATCAACTT TATCTA AGC TAGATA TTTTTATATATTTTT CLD_A0089 67770 - 67609 - | hypothetical protein TERM 142 67813 - 67792 - R 71 -8.1 -3.0263 | opp_overlap 67789 67792 ATCACGCTCCTAATA CTATGTAGC TATA ACTACATAG TGCTTCTATTCCAAT CLD_A0090 68349 - 67819 - | hypothetical protein TERM 143 68173 - 68144 - G 90 -6.6 -5.60993 | opp_overlap 68143 TCCCCTACAAAAAAA TCGAATTCTTCA TCTTCC TTAAGAATTCGA AGTATATCTTTAGCT TERM 144 68439 - 68398 - R 71 -8.5 -3.07109 | opp_overlap 68399, overlap 68423 AAATTCATATATACA TTTTTTATAAAAAATATTA GCAA CATTATTTTTTATAAAAAA TAAAAAGAGAGGAAG TERM 145 68485 - 68446 - R 90 -6.6 -5.8096 | opp_overlap 68446 TATAAAAAATAAAAA GAGAGGAAGCTAAAAATA ATAT TACTCTTAGTTTTCTCTC TTCCTTAGATAGATT CLD_A0091 68863 - 68504 - | hypothetical protein CLD_A0092 69351 - 69004 - | hypothetical protein CLD_A0093 69392 - 69541 + | hypothetical protein CLD_A0094 70328 - 69660 - | serine/threonine protein phosphatase CLD_A0095 70562 - 70380 - | hypothetical protein CLD_A0096 71475 - 70960 - | hypothetical protein CLD_A0097 72240 - 71752 - | hypothetical protein CLD_A0098 72766 - 72272 - | hypothetical protein TERM 146 72734 - 72722 - G 87 -3.5 -5.89827 | AAGTATTAAAAAAAA TAAAA CCC TTTTA CAGTTAGATAATTTT CLD_A0099 73120 - 72989 - | hypothetical protein TERM 147 73081 - 73106 + g 90 -12.1 -3.01041 | TTATTTTTTCATCAT GTTTATGTACA TTAA TGTACATAAAC TCTATAATTGGCATT CLD_A0100 73650 - 73264 - | hypothetical protein CLD_A0101 74041 - 73718 - | hypothetical protein CLD_A0102 74329 - 74066 - | hypothetical protein CLD_A0103 74578 - 74357 - | hypothetical protein CLD_A0104 74784 - 74578 - | hypothetical protein CLD_A0105 75298 - 74804 - | hypothetical protein TERM 148 74882 - 74894 + g 85 -3.5 -5.80951 | overlap 74888 TGCCGGATATCTATA TATTT TTA AAATA TTTTTTATTTTGCAT TERM 149 75378 - 75393 + r 70 -6.2 -4.35747 | TAATGATAAATATTC TCCTAT TAAC ATAGGA TTTGCTTTATTTTTA CLD_A0106 75573 - 75409 - | hypothetical protein TERM 150 75745 - 75719 - R 100 -11.8 -5.79595 | opp_overlap 75721 TTTCAAAATAAAAAA CACGATATATTA TTT TAATATACCGTG TTAAAAAAATTTATT CLD_A0107 76115 - 75762 - | hypothetical protein CLD_A0108 76561 - 76181 - | death-on-curing family protein TERM 151 76252 - 76270 + g 71 -4.6 -4.70659 | opp_overlap 76252 76255, overlap 76255 CTTTGGCTATACTAA GACCTAAT TTT ATTAGTTC TTTTTGAGTATAGCC TERM 152 76454 - 76478 + g 73 -8.7 -3.13867 | opp_overlap 76458, overlap 76458 TTGAAATGGATTTTC TAAAGCACTTT TAA GAAGTGCTTTG TCTCTTACTCCATGA TERM 153 76458 - 76474 + g 77 -7.3 -4.22927 | opp_overlap 76458, overlap 76454 AATGGATTTTCTAAA GCACTTT TAA GAAGTGC TTTGTCTCTTACTCC CLD_A0109 76728 - 76555 - | hypothetical protein TERM 154 76832 - 76808 - R 100 -9.5 -5.73978 | opp_overlap 76810 76812 ATTACAAATAAAAAA CATAGTATATT AAA AACATACTATG TTGAAAAACTTACTA CLD_A0110 78265 - 76907 - | putative Cpp50 TERM 155 78397 - 78365 - R 100 -12.3 -4.80453 | opp_overlap 78370 78372, overlap 78368 GCATTATAAAATAAA GAACACAGTATATTT TTT AAATATACTGTGTTA AGAAAATTTATTATT TERM 156 78394 - 78368 - R 100 -14 -4.48317 | opp_overlap 78370 78372, overlap 78365 TTATAAAATAAAGAA CACAGTATATTT TTT AAATATACTGTG TTAAGAAAATTTATT TERM 157 78370 - 78392 + r 85 -10.8 -3.03635 | opp_overlap 78368 78365, overlap 78372 ATAAAATAAAGAACA CAGTATATTT TTT AAATATACTG TGTTAAGAAAATTTA TERM 158 78444 - 78471 + r 73 -7.2 -4.16814 | opp_overlap 78450, overlap 78446 TTTCTATTTTAATGG TATAGATTTTGT TTAA ACAAAATCTATC TTATTTCTATCATAA TERM 159 78446 - 78469 + r 90 -9.8 -3.67344 | opp_overlap 78450, overlap 78444 TCTATTTTAATGGTA TAGATTTTGT TTAA ACAAAATCTA TCTTATTTCTATCAT CLD_A0111 79142 - 78456 - | hypothetical protein TERM 160 78552 - 78562 + g 71 -3.2 -5.20783 | overlap 78537 TGCCAATACTGGAAC TGGC ATT GCTA TTTTTGTATTTAAAT CLD_A0112 79732 - 79202 - | hypothetical protein TERM 161 79833 - 79808 - R 100 -10.7 -5.64421 | opp_overlap 79810 79812 ATTTCAAATAAAAAA CATAGTATATT AAAA AATATACTATG TTAAAAAGTTACTAT CLD_A0113 80438 - 79872 - | hypothetical protein TERM 162 80193 - 80203 + g 70 -4 -4.90455 | TGCATGTTTAGCATT GTTA TAA TAAC TTTTTGTGAATCTCT CLD_A0114 80889 - 80530 - | putative lipoprotein CLD_A0115 81574 - 81134 - | hypothetical protein CLD_A0116 81887 - 81678 - | hypothetical protein TERM 163 81990 - 81966 - R 100 -9.5 -5.79595 | opp_overlap 81968 81970 81989 TTTCAAAACAAAAAA CATAGTATATT AAA AACATACTATG TTAAAAAATTTAATA CLD_A0117 82365 - 82051 - | hypothetical protein CLD_A0118 82851 - 82435 - | hypothetical protein CLD_A0119 83125 - 82925 - | hypothetical protein CLD_A0120 83359 - 83180 - | hypothetical protein TERM 164 83213 - 83229 + g 71 -7.3 -3.86437 | overlap 83210 83215 TTCTAATTCTCTTAT TGGCACA TAT TGTGCTA TATTATTTTTGCTTA TERM 165 83215 - 83227 + g 71 -7.7 -3.48772 | overlap 83213 83210 CTAATTCTCTTATTG GCACA TAT TGTGC TATATTATTTTTGCT CLD_A0121 83706 - 83413 - | hypothetical protein TERM 166 83616 - 83630 + g 75 -10 -2.52023 | overlap 83615 TACCAACTACTTTTC CCTCTG TAC CAGAGG CTCTTACTATAACTC CLD_A0122 84063 - 83869 - | hypothetical protein CLD_A0123 84296 - 84078 - | hypothetical protein CLD_A0124 84589 - 84368 - | hypothetical protein TERM 167 84710 - 84673 - R 100 -8.7 -6.09196 | overlap 84651 TTCAAAATAAAAAAA TAAGCATCTGATAGTCT ATTA AAACCATCAAATACTTA TTTTTAAAACATATA CLD_A0125 84917 - 84744 - | hypothetical protein TERM 168 85081 - 85056 - R 72 -6.1 -4.42851 | TTAAGAAATGTAAAA GGACCTGCTAA GATA TGAACAGGCCC TTTTGTAAATACAAA CLD_A0126 86131 - 85097 - | hypothetical protein TERM 169 86186 - 86210 + r 83 -5.9 -5.27335 | opp_overlap 86186 TCAAAAAAATAAAAA CAACTATTT CTTATCT AAATAGTTG TTTTTGTTTAAAAAA TERM 170 86210 - 86186 - R 90 -5.9 -5.86609 | opp_overlap 86186 TCAAAAAAATAAAAA CAACTATTT CTTATCT AAATAGTTG TTTTTGTTTAAAAAA CLD_A0127 86988 - 86227 - | hypothetical protein CLD_A0128 87758 - 87024 - | hypothetical protein TERM 171 87863 - 87885 + r 88 -6.4 -5.5943 | opp_overlap 87863 TATACAACAAAAAAA CAAATATCCA TTA TAGATATTTG TTTTTTTACTAATTT TERM 172 87885 - 87863 - R 100 -8.6 -5.9218 | opp_overlap 87863 TATACAACAAAAAAA CAAATATCCA TTA TAGATATTTG TTTTTTTACTAATTT CLD_A0129 90019 - 87926 - | DNA helicase II TERM 173 88310 - 88282 - G 80 -6.3 -4.86773 | opp_overlap 88282 TAAAAGTATCAAAAA TGTTATTATTA ATATCTG TAATAATAACA TTTGACCATTCTAGG TERM 174 88471 - 88483 + g 86 -6.3 -5.4111 | opp_overlap 88471 TAATGATATCAACTA TCTGA GAA TCAGA TTTTTTATCATTATT CLD_A0130 90369 - 90016 - | hypothetical protein TERM 175 90246 - 90260 + g 71 -7.2 -3.85859 | opp_overlap 90246 CATTGAATACAATAA TTAGCA CAT TGCTAA TTCTCTTTGCATATT TERM 176 90260 - 90246 - G 74 -7.2 -3.97511 | opp_overlap 90246 CATTGAATACAATAA TTAGCA CAT TGCTAA TTCTCTTTGCATATT TERM 177 90384 - 90350 - G 100 -16.8 -3.65812 | opp_overlap 90356 90358, overlap 90353 CCCCTTTCAACATAA TAAGCAGAGAACATAA TCA TTATATTCTCTGCTTA AAAACCCGTTCACTT TERM 178 90381 - 90353 - G 100 -14.1 -3.9644 | opp_overlap 90356 90358, overlap 90350 CTTTCAACATAATAA GCAGAGAACATAA TCA TTATATTCTCTGC TTAAAAACCCGTTCA TERM 179 90708 - 90727 + r 93 -6.6 -5.89659 | opp_overlap 90708 TTTTCAAAATAAAAA GTTTAAAA GAAA TTTTAAAC TTTTTATTTTTTTAT TERM 180 90727 - 90708 - R 88 -6.6 -5.45802 | opp_overlap 90708 TTTTCAAAATAAAAA GTTTAAAA GAAA TTTTAAAC TTTTTATTTTTTTAT CLD_A0131 91416 - 90745 - | thermonuclease (TNase) (micrococcal nuclease)(staphylococcal nuclease) CLD_A0132 91841 - 91539 - | hypothetical protein TERM 181 92005 - 91965 - R 87 -10 -3.30038 | gap 1, opp_overlap 91973 91974 91999, overlap 91972 TATATCTAAATCGAA TGGACAAGTTTCGCGAAAT CAGC ATTTCGCG-AACTTATCTA AAAAATTAAGATAAT TERM 182 91998 - 91972 - R 77 -8.9 -3.43965 | gap 1, opp_overlap 91973 91974, overlap 91965 AAATCGAATGGACAA GTTTCGCGAAAT CAGC ATTTCGCG-AAC TTATCTAAAAAATTA TERM 183 91973 - 91998 + r 79 -9.1 -3.494 | opp_overlap 91972 91965, overlap 91974 AATCGAATGGACAAG TTTCGCGAAAT CAGC ATTTCGCGAAC TTATCTAAAAAATTA TERM 184 91974 - 91997 + r 90 -12.6 -2.69319 | opp_overlap 91972 91965, overlap 91973 ATCGAATGGACAAGT TTCGCGAAAT CAGC ATTTCGCGAA CTTATCTAAAAAATT TERM 185 92089 - 92125 + r 100 -5.4 -6.17669 | gap 2, opp_overlap 92089 92090 92092, overlap 92090 92091 92092 TTCTTCATAAAAAAA TTAT-CCCCTTCCA-AAT TTA ATTATGGAAGGGGAATAC TTTTTTTATTTTCTT TERM 186 92124 - 92089 - R 91 -7 -5.60993 | gap 1, opp_overlap 92089 92090 92091 92092, overlap 92090 92092 TTCTTCATAAAAAAA TTATCCCCTTCCA-AAT TTA ATTATGGAAGGGGAATA CTTTTTTTATTTTCT TERM 187 92124 - 92090 - R 81 -8.9 -3.95873 | gap 2, opp_overlap 92089 92090 92091 92092, overlap 92089 92092 TCTTCATAAAAAAAT TAT-CCCCTTCCA-AAT TTA ATTATGGAAGGGGAATA CTTTTTTTATTTTCT TERM 188 92090 - 92124 + r 84 -8.9 -4.25111 | gap 2, opp_overlap 92089 92090 92092, overlap 92089 92091 92092 TCTTCATAAAAAAAT TAT-CCCCTTCCA-AAT TTA ATTATGGAAGGGGAATA CTTTTTTTATTTTCT TERM 189 92091 - 92122 + r 84 -9.6 -3.66605 | gap 1, opp_overlap 92089 92090 92092, overlap 92090 92089 92092 CTTCATAAAAAAATT ATCCCCTTCCA-AAT TTA ATTATGGAAGGGGAA TACTTTTTTTATTTT TERM 190 92121 - 92092 - R 100 -13.1 -3.56036 | gap 1, opp_overlap 92091 92090 92089 92092, overlap 92089 92090 TTCATAAAAAAATTA TCCCCTTCCA-AAT TTA ATTATGGAAGGGGA ATACTTTTTTTATTT TERM 191 92092 - 92121 + r 93 -13.1 -2.76303 | gap 1, opp_overlap 92092 92089 92090, overlap 92091 92090 92089 TTCATAAAAAAATTA TCCCCTTCCA-AAT TTA ATTATGGAAGGGGA ATACTTTTTTTATTT CLD_A0133 92399 - 92223 - | hypothetical protein TERM 192 92303 - 92321 + g 72 -7.6 -3.68416 | GATTACCATTGCCAG GAAAATAA ATA TTATTTTC TTCTAATTGTTTTAA CLD_A0134 92737 - 92450 - | hypothetical protein TERM 193 92525 - 92541 + g 79 -5.3 -5.27769 | overlap 92534 GTCATCATACCATTT TAATTTT TCG AAAATTA TTTTTCCTTTTTTAT TERM 194 92858 - 92896 + r 100 -17.1 -6.01187 | opp_overlap 92858 ATTTCAAATAAAAAA TACAAGCAAATGTCCTT TTTAT AAGGATATTTGCTTGTA TTTTTTTATTTAATT TERM 195 92896 - 92858 - R 100 -14.9 -5.64421 | opp_overlap 92858 ATTTCAAATAAAAAA TACAAGCAAATGTCCTT TTTAT AAGGATATTTGCTTGTA TTTTTTTATTTAATT TERM 196 93059 - 93078 + r 74 -8.6 -3.406 | opp_overlap 93059 93058 GAATATTCCTACAAG CCTACGAA TTTA TTCGTGGG TTAGTTGACTCTTCA CLD_A0135 94235 - 93060 - | hypothetical protein TERM 197 93916 - 93926 + g 72 -4 -5.08178 | ACAACCTCGCTCCAT TTCA TTT TGAA TTTTTCTCTATATGT CLD_A0136 94802 - 94455 - | hypothetical protein CLD_A0137 95082 - 94825 - | hypothetical protein CLD_A0138 95419 - 95204 - | hypothetical protein TERM 198 95397 - 95408 + g 71 -3 -5.24551 | opp_overlap 95396, overlap 95396 CCATTCCTTATCAAT GTAT AAAA ATAC TTTTTATTCATTTCA CLD_A0139 95981 - 95523 - | hypothetical protein TERM 199 96010 - 96026 + r 71 -6.6 -4.08221 | CTTTATATTCTATTT GGTTGA TTTCC TCAACC TTTAATTATATTAAA TERM 200 96196 - 96163 - R 75 -9.1 -3.20028 | opp_overlap 96163 96193, overlap 96161 96160 96167 96193 TTTAGTATAAAATTA TGAACGTATGATTAT AAAT AAAATCATACATTCA TTTATTGAAAATTTT TERM 201 96163 - 96196 + r 73 -6.9 -4.19974 | opp_overlap 96163 96161 96160 96167 96193, overlap 96193 TTTAGTATAAAATTA TGAACGTATGATTAT AAAT AAAATCATACATTCA TTTATTGAAAATTTT CLD_A0140 97010 - 96282 - | hypothetical protein TERM 202 97191 - 97224 + r 95 -12.8 -3.68445 | opp_overlap 97195 97221, overlap 97183 GTATTGTTATTCTAA TGAATGTATGATTT CATCTA AAATCATACATTCA TTATTGAAAATTTTT TERM 203 97220 - 97195 - R 74 -8.5 -3.35813 | opp_overlap 97191 97183 TGTTATTCTAATGAA TGTATGATTTC ATCT AAAATCATACA TTCATTATTGAAAAT CLD_A0141 97975 - 97304 - | hypothetical protein TERM 204 98039 - 98063 + r 70 -5.1 -4.88129 | overlap 98041 CAATTAAATTATCTA CCTTTAATGTA ATT TACATTAGAAG TTTTTAGTGCTTTTT CLD_A0142 98541 - 98095 - | hypothetical protein TERM 205 98175 - 98200 + g 76 -6.9 -4.49311 | opp_overlap 98174 AACTACACATTAATG GGAAAAAACCT TTAG GGGTTTTTGCC TTTTGTAATAATAAT CLD_A0143 99132 - 98587 - | hypothetical protein CLD_A0144 99488 - 99174 - | hypothetical protein CLD_A0145 99806 - 99537 - | hypothetical protein CLD_A0146 100180 - 99878 - | hypothetical protein CLD_A0147 100420 - 100220 - | hypothetical protein TERM 206 100518 - 100493 - R 100 -8.4 -5.71712 | overlap 100452 TGTGACATAAAAAAA TACTGCACCA ATTGAA TAGTGCAGTA TAAAACTTATTATAT CLD_A0148 101106 - 100534 - | hypothetical protein CLD_A0149 101347 - 101123 - | hypothetical protein CLD_A0150 101916 - 101554 - | hypothetical protein TERM 207 101693 - 101704 + g 79 -5.8 -5.02323 | opp_overlap 101693 TTATATACAAAGTTA GGCA GTTC TGCC TTTTCTTTATCATCA CLD_A0151 102759 - 101995 - | hypothetical protein CLD_A0152 103274 - 102828 - | hypothetical protein CLD_A0153 103673 - 103308 - | hypothetical protein CLD_A0154 104189 - 103737 - | hypothetical protein CLD_A0155 104550 - 104290 - | hypothetical protein TERM 208 104571 - 104559 - R 72 -7.7 -3.55761 | opp_overlap 104554 TACCCACGCTCTAAA GGTTG AAC CAACC TCAGTGTATTACCAA CLD_A0156 105677 - 104589 - | transposase TERM 209 105619 - 105630 + g 78 -4.4 -5.34655 | overlap 105614 CATCCAAAGGTTTTT GCAA AATA TTGC TTTTGTTTTTCGTTA CLD_A0157 106466 - 105777 - | hypothetical protein CLD_A0158 106621 - 107124 + | single-strand binding protein TERM 210 107482 - 107514 + G 83 -8.7 -4.11216 | opp_overlap 107482 107484, overlap 107484 TGACTAATGAAGAAA TATCATTATTTATAG ATC CTAAAAATAATGATG TTTTAAAAATAAAGC TERM 211 107514 - 107482 - g 72 -6.5 -4.34737 | opp_overlap 107482 107484, overlap 107484 TGACTAATGAAGAAA TATCATTATTTATAG ATC CTAAAAATAATGATG TTTTAAAAATAAAGC TERM 212 107484 - 107512 + G 81 -9.1 -3.65542 | opp_overlap 107482 107484, overlap 107482 ACTAATGAAGAAATA TCATTATTTATAG ATC CTAAAAATAATGA TGTTTTAAAAATAAA TERM 213 107512 - 107484 - g 84 -9.1 -3.77023 | opp_overlap 107484 107482, overlap 107482 ACTAATGAAGAAATA TCATTATTTATAG ATC CTAAAAATAATGA TGTTTTAAAAATAAA TERM 214 107855 - 107831 - g 77 -7.2 -4.29977 | overlap 107832 AAATAACCTAAGAAA TCTGTCATCA TTAAT TGATGACAGC ACAGAAGAGGTTATA TERM 215 107854 - 107832 - g 85 -10.7 -3.16359 | overlap 107831 AATAACCTAAGAAAT CTGTCATCA TTAAT TGATGACAG CACAGAAGAGGTTAT dnaN 107226 - 108371 + | DNA polymerase III, beta subunit CLD_A0159 108695 - 108342 - | hypothetical protein TERM 216 108390 - 108414 + g 100 -10.9 -5.4756 | opp_overlap 108390 TTCAATAATAAAAAA TCCAACTATAT TTA GTATAGTTGGA TTTTTTATTACAATT TERM 217 108414 - 108390 - G 100 -10.2 -5.64873 | opp_overlap 108390 TTCAATAATAAAAAA TCCAACTATA TTTAG TATAGTTGGA TTTTTTATTACAATT TERM 218 108997 - 109031 + r 100 -10.2 -4.88687 | overlap 108990 CGTATGCCCCTAAGT TTAAGTAGTTTAGGTT ATA GACCTATGCTACTTAA TTGTTTTTTATTTAA CLD_A0161 110453 - 109011 - | putative IS transposase TERM 219 111141 - 111131 - g 72 -4 -5.06414 | CTCTTCTAATAAAAA CAAA ACA TTTG GAATTTGGCAACAAG TERM 220 112160 - 112138 - g 84 -9.2 -3.78087 | AATTAAAATCTCAAA TAGGTGCACT TGT AGTGGACCTA GAAAATAGTGATACA TERM 221 112626 - 112616 - g 88 -4 -5.75599 | TAAAGTACAAAAAAA TATC GAT GATA AAAAGACTGAAGAAG TERM 222 113339 - 113320 - g 81 -3.6 -5.58522 | TAGATAAAATAAAAA CAAATGAA GCAA TCCACTTG GTTGAATATGCTGAA TERM 223 113783 - 113773 - g 85 -2.6 -5.92399 | CAATAAAAGAAAAAA TAAA TGA TTTA AAAGATACAAAAGAA CLD_A0162 110760 - 114182 + | putative viral A-type inclusion protein TERM 224 114220 - 114191 - T 70 -3.6 -5.11389 | opp_overlap 114192, overlap 114186 114192 AGAATAGAAATAAAA GGACTTAGGCAT TTTTAC ATGTCTAAGTCT TTTTTTAAATATAAT TERM 225 114192 - 114219 + T 100 -9.3 -5.50499 | opp_overlap 114191 114186 114192 GAATAGAAATAAAAG GACTTAGGCAT TTTTAC ATGTCTAAGTC TTTTTTTAAATATAA CLD_A0163 114942 - 114274 - | hypothetical protein CLD_A0164 117863 - 114945 - | hypothetical protein TERM 226 115798 - 115812 + g 73 -5.7 -4.59109 | AATAAACAATATGGT GGAGA GAATA TCTCC TTTTTACCCAATCTA TERM 227 116236 - 116252 + g 81 -6.5 -5.1615 | overlap 116235 TTAAACATAAGTATT GCTGCTG GTG CATCAGC TTTTTTAAATATTAA TERM 228 116625 - 116649 + g 74 -9.5 -2.86449 | opp_overlap 116632, overlap 116632 CTTTAAATTTGGTAG TCTAAAATCAT CTA ATGATTTTGGA TCCTTGTAATCAAAT TERM 229 118106 - 118134 + r 87 -10.4 -3.17274 | opp_overlap 118106, overlap 118104 118102 118101 TTTTTTATACTAAAA GGTAGCAAGACT TGTAT AATCTTGCTACC TCTCTATTATACTTC TERM 230 118134 - 118106 - R 100 -12.6 -4.34402 | opp_overlap 118106 118104 118102 118101 TTTTTTATACTAAAA GGTAGCAAGACT TGTAT AATCTTGCTACC TCTCTATTATACTTC CLD_A0165 121332 - 118141 - | hypothetical protein TERM 231 119164 - 119185 + g 71 -6.7 -4.03183 | gap 1 TATTTTATGAGCACC TGGAGATAGT GTA ACT-TCTCCA TTATATTTTATAAAT TERM 232 119298 - 119315 + g 70 -3.5 -5.12172 | overlap 119310 CATTTATATTAGCAA TTGGTAA TTCT TTATCAA TTTTGTTTATTGATA TERM 233 121583 - 121560 - R 100 -6.8 -6.18768 | opp_overlap 121560 121579 AAAACATAAAAAAAA CACTAGATAC TTTT ATACCTAGTG TGTTATACATTACTT CLD_A0166 122465 - 121605 - | hypothetical protein TERM 234 122598 - 122623 + r 91 -10.5 -3.51924 | opp_overlap 122598 TTACAAGATCTAAAA GGACCTGCT AATATACA AGCAGGTCC TTCTATAAATACAAA TERM 235 122623 - 122598 - R 95 -10.5 -4.30441 | opp_overlap 122598 TTACAAGATCTAAAA GGACCTGCT AATATACA AGCAGGTCC TTCTATAAATACAAA CLD_A0167 123682 - 122639 - | hypothetical protein TERM 236 123760 - 123736 - R 76 -3 -5.86609 | opp_overlap 123725 123736 CCAAAAAAATAAAAA CAACTATT TTGACTTTT AATAGTTG TTTTTATTTGAATAT CLD_A0168 124572 - 123778 - | hypothetical protein TERM 237 124541 - 124561 + g 70 -6.3 -4.19177 | ATTAATAATACCACT GAAATTAAT CTA GTTAATTTC TTTCTATTCACCAAT CLD_A0169 125359 - 124610 - | hypothetical protein TERM 238 124723 - 124707 - G 72 -8.1 -3.28924 | opp_overlap 124704 124707 TATTTTGGTGTATAA TATGATG CTC CATCATA TGATTGATCTAATCT TERM 239 125493 - 125463 - H 91 -7 -5.62045 | opp_overlap 125463 ATACACAACAAAAAA CCTAACTTATATAT TTT AAAAATAAGTTAGG TTTTTTATTGTGTTT TERM 240 125463 - 125493 + H 93 -7 -5.66338 | opp_overlap 125463 ATACACAACAAAAAA CCTAACTTATATAT TTT AAAAATAAGTTAGG TTTTTTATTGTGTTT CLD_A0170 125591 - 125761 + | hypothetical protein TERM 241 125801 - 125766 - f 100 -17.2 -5.11613 | opp_overlap 125766 ATATTATCTAAAAAA CCATCTCAACATAATT TTGA AATTATGCTGAGATGG TTTTTTAAATTCCTA TERM 242 125766 - 125801 + F 100 -15 -5.17576 | opp_overlap 125766 ATATTATCTAAAAAA CCATCTCAACATAATT TTGA AATTATGCTGAGATGG TTTTTTAAATTCCTA CLD_A0171 126150 - 126551 + | hypothetical protein TERM 243 126643 - 126631 - g 72 -4.9 -4.99638 | opp_overlap 126631 126636 ACATTCATATAAAAA TCTAT TTA ATAGA ATTAATCTTAAAGAA CLD_A0172 126548 - 128950 + | hypothetical protein CLD_A0173 129132 - 129731 + | hypothetical protein TERM 244 129806 - 129774 - T 75 -7.3 -4.31835 | gap 1, opp_overlap 129769 129774 AATTTTTACAATAAA CATCTCAGTAT-AT GTTAGG ATCATACTGAGATG TTGACTTATTAAATT CLD_A0174 130376 - 129975 - | hypothetical protein TERM 245 130171 - 130151 - G 76 -9.9 -2.81768 | opp_overlap 130156, overlap 130150 130153 CTATATTATCTAAAT CATTATCTT TAG AAGATAATG TAAACTGTTGCTCGT TERM 246 130482 - 130537 + r 100 -14.5 -3.97622 | opp_overlap 130488 130492, overlap 130471 130492 ATATTAAAAATATTT TATATATAAATTAACATCAGTTCCC AATTTA GCGAACTGATGTTAATTTATGAATA TTATCTTTTAAGTAA TERM 247 130531 - 130488 - R 100 -15.8 -2.92851 | gap 1, opp_overlap 130482 130492, overlap 130492 AAAATATTTTATATA TAAATTAACATCAGTTC-CCA ATT TAGCGAACTGATGTTAATTTA TGAATATTATCTTTT TERM 248 130492 - 130527 + r 100 -12.1 -3.98842 | opp_overlap 130488 130492, overlap 130482 TATTTTATATATAAA TTAACATCAGTTCCC AATTTA GCGAACTGATGTTAA TTTATGAATATTATC TERM 249 130527 - 130492 - R 100 -12.2 -4.13246 | gap 1, opp_overlap 130492 130482, overlap 130488 TATTTTATATATAAA TTAACATCAGTTC-CCA ATT TAGCGAACTGATGTTAA TTTATGAATATTATC CLD_A0175 130681 - 130538 - | hypothetical protein CLD_A0176 130970 - 130803 - | hypothetical protein CLD_A0177 131335 - 130970 - | hypothetical protein CLD_A0178 131531 - 131352 - | hypothetical protein CLD_A0179 131726 - 131556 - | hypothetical protein CLD_A0180 131914 - 131723 - | hypothetical protein TERM 250 132175 - 132149 - R 100 -7.5 -5.79595 | opp_overlap 132151 TTTCAAAATAAAAAA CATAGTATATT AAAAA AACATACTATG TTAAGAAAATTACTA CLD_A0181 132553 - 132248 - | hypothetical protein CLD_A0182 133136 - 132864 - | hypothetical protein TERM 251 133298 - 133262 - R 93 -6.7 -5.82281 | opp_overlap 133281 AAATATACAAAAAAA TTAACACCAGCTCCCTA ATT CAGTAAACTGATGTTAA AGTGTAGATTTCATC CLD_A0183 135437 - 133326 - | phosphoadenosine phosphosulfate reductase family protein TERM 252 133662 - 133680 + g 86 -3.2 -5.95539 | CAATTTCTTATCATA TATTTCGT TAT ATGGAATA TTTTTTTCTTTGACA TERM 253 135511 - 135550 + r 70 -7.6 -3.43405 | gap 1, opp_overlap 135511, overlap 135509 135507 ATTCCAAAATAAAAA CAGTAAAAATTA-TTGA TATATCT TCAAATAATTTTTACTG TCTATTGTTTTAATA TERM 254 135550 - 135511 - R 100 -7.6 -5.46706 | gap 1, opp_overlap 135511 135509 135507 ATTCCAAAATAAAAA CAGTAAAAATTA-TTGA TATATCT TCAAATAATTTTTACTG TCTATTGTTTTAATA CLD_A0184 135813 - 135601 - | hypothetical protein TERM 255 135927 - 135903 - R 87 -6.6 -5.44837 | opp_overlap 135903 135900 AAAAAAATAGAAAAA CTATCTTAAT ATAAA ACTAAGATAG TTCTTTATGTTTAAA CLD_A0185 138220 - 135938 - | hypothetical protein TERM 256 138422 - 138453 + r 100 -8.9 -5.36965 | opp_overlap 138422 ACACAAAAGAAAAAA GTAGCAAGACT ATTTAATTTA AGTCTTGCTAC TTTTTTATAATCTTA TERM 257 138453 - 138422 - R 100 -8.9 -5.8901 | opp_overlap 138422 ACACAAAAGAAAAAA GTAGCAAGACT ATTTAATTTA AGTCTTGCTAC TTTTTTATAATCTTA CLD_A0186 139039 - 138458 - | hypothetical protein TERM 258 138738 - 138754 + g 71 -6.7 -3.96481 | ACATCGCTACTTTTT TCTATAA CTG TTATAGA TTTAACTTCTTTTTT CLD_A0187 140565 - 139093 - | C-5 cytosine-specific DNA methylase TERM 259 140631 - 140673 + r 70 -3.6 -5.09521 | opp_overlap 140621 140640, overlap 140633 140640 AATTATTATTTCGAA AAAATAAAAGTACATTATGT TGA ACATAATGTACTTTGCTGTA TTTTTAGTTTATTCC TERM 260 140640 - 140664 + r 100 -13.1 -4.02999 | opp_overlap 140640, overlap 140633 140631 TTCGAAAAAATAAAA GTACATTATGT TGA ACATAATGTAC TTTGCTGTATTTTTA TERM 261 140664 - 140640 - R 100 -13.1 -5.42198 | opp_overlap 140640 140633 140631 TTCGAAAAAATAAAA GTACATTATGT TGA ACATAATGTAC TTTGCTGTATTTTTA CLD_A0188 140890 - 140702 - | hypothetical protein TERM 262 140960 - 140994 + r 74 -5.9 -4.67234 | opp_overlap 140961, overlap 140961 ATTATTTCAAAAAAA ACTTTAGGAACATTT AAATA AAATATTCCTAAAGC TTTTTGCGCTTACAT TERM 263 140961 - 140993 + r 82 -9.4 -3.39618 | opp_overlap 140961, overlap 140960 TTATTTCAAAAAAAA CTTTAGGAACATTT AAATA AAATATTCCTAAAG CTTTTTGCGCTTACA TERM 264 140993 - 140961 - R 100 -11.6 -5.78622 | opp_overlap 140961 140960 TTATTTCAAAAAAAA CTTTAGGAACATTT AAATA AAATATTCCTAAAG CTTTTTGCGCTTACA CLD_A0189 141948 - 141004 - | SPFH domain-containing protein/band 7 family protein TERM 265 142054 - 142028 - R 90 -6.7 -5.79595 | opp_overlap 142031 TTGTAAAATAAAAAA GAATTGGGATT TTTTC AATTCCAATTC TTAAAGGTTCTTTAT CLD_A0190 142299 - 142066 - | hypothetical protein CLD_A0191 142959 - 142375 - | hypothetical protein TERM 266 142552 - 142526 - G 72 -4.5 -5.00616 | overlap 142530 TTCTCCTCCAAAAAA GGTATATTACA TTCTT TGTAATACGCC ATGAATAATTTTTCT TERM 267 143155 - 143112 - H 100 -13.4 -5.9362 | opp_overlap 143117 TAAAATATAAAAAAA GAAAAGGTAGAAAGACTTTG AACA CATAGTCTTCCTACCTTTTT CTTTTAACTATATTA TERM 268 143117 - 143150 + H 100 -11.1 -5.48213 | opp_overlap 143112 TATAAAAAAAGAAAA GGTAGAAAGACTTTG AACA CATAGTCTTCCTACC TTTTTCTTTTAACTA TERM 269 143746 - 143726 - g 71 -3.3 -5.33866 | overlap 143727 TAAATTTATAAAAAA CCAGCAACA ATT TATTACTGA GTTAGTATCAATAAA cas 143472 - 144095 + | CRISPR-associated protein Cas6 TERM 270 145071 - 145082 + G 70 -5.8 -4.26351 | opp_overlap 145069 145071 ACAAATATACTAATA CAGG CCAA CCTG TTTATTACATTACTA CLD_A0193 144122 - 145987 + | hypothetical protein CLD_A0194 146037 - 146975 + | hypothetical protein TERM 271 147288 - 147274 - g 72 -5 -4.7657 | TAAAAACTTTAAAAA TTAGCA TAG TGCCAA AGAGTAAAACAGGAT cas5h 147066 - 147827 + | CRISPR-associated protein Cas5, hmari subtype SEQUENCE gi|170754211|ref|NC_010516.1| Clostridium botulinum B1 str. Okra, complete genome (length 3958233) dnaA 38 - 1375 + | chromosomal replication initiator protein DnaA dnaN 1638 - 2741 + | DNA polymerase III, beta chain CLD_0823 2760 - 2966 + | S4 domain-containing protein TERM 1 2959 - 2989 + F 79 -8.7 -3.72027 | opp_overlap 2952 2950 2959, overlap 2952 ATGAAACATATAAAA TTATTTAAAATTT TATAT AAATTTTAAATAA TTGTTACTAAAAAAT TERM 2 2989 - 2959 - f 93 -8.7 -4.74917 | opp_overlap 2952 2959, overlap 2952 2950 ATGAAACATATAAAA TTATTTAAAATTT TATAT AAATTTTAAATAA TTGTTACTAAAAAAT recF 3035 - 4129 + | DNA replication and repair protein RecF CLD_0821 4150 - 4413 + | hypothetical protein gyrB 4431 - 6344 + | DNA gyrase, B subunit gyrA 6370 - 8955 + | DNA gyrase, A subunit TERM 3 8953 - 9000 + F 100 -14.6 -4.48987 | opp_overlap 8957 8969, overlap 8957 8960 8969 AATCTAAATGAAGAA TAAATAATAAGAAAAATCAGCA TAAA TGCTGATTTTTCTTATTATAAA TTTTAATTATAAAAA TERM 4 8957 - 8996 + F 100 -19.8 -2.8155 | opp_overlap 8957 8969, overlap 8953 8960 8969 TAAATGAAGAATAAA TAATAAGAAAAATCAGCA TAAA TGCTGATTTTTCTTATTA TAAATTTTAATTATA TERM 5 8996 - 8957 - f 100 -19.8 -4.54404 | opp_overlap 8957 8953 8960 8969, overlap 8969 TAAATGAAGAATAAA TAATAAGAAAAATCAGCA TAAA TGCTGATTTTTCTTATTA TAAATTTTAATTATA TERM 6 8960 - 8993 + F 100 -17.1 -3.53787 | opp_overlap 8957 8969, overlap 8957 8953 8969 ATGAAGAATAAATAA TAAGAAAAATCAGCA TAAA TGCTGATTTTTCTTA TTATAAATTTTAATT TERM 7 8969 - 8984 + F 100 -7.6 -5.34365 | opp_overlap 8969 8957, overlap 8960 8957 8953 AAATAATAAGAAAAA TCAGCA TAAA TGCTGA TTTTTCTTATTATAA TERM 8 8984 - 8969 - f 100 -7.6 -5.40014 | opp_overlap 8960 8957 8953 8969, overlap 8957 AAATAATAAGAAAAA TCAGCA TAAA TGCTGA TTTTTCTTATTATAA TERM 9 9220 - 9205 - f 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 10 10860 - 10841 - f 75 -9.2 -2.65808 | opp_overlap 10844 10847, overlap 10838 10853 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 11 11162 - 11177 + F 73 -9 -2.79915 | opp_overlap 11159 11162, overlap 11164 11172 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 12 11177 - 11162 - f 72 -9 -2.69489 | opp_overlap 11162 11164 11172, overlap 11159 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 13 11321 - 11304 - f 76 -8.5 -3.695 | opp_overlap 11303 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 14 11487 - 11472 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 15 11561 - 11550 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT CLD_0815 14041 - 14160 + | hypothetical protein TERM 16 14273 - 14257 - f 72 -8.7 -2.62616 | overlap 14272 TCAGTTGGGAGAGCA CCTGCCT TGC AAGCAGG GGGTCAGGAGTTCGA TERM 17 14346 - 14311 - f 75 -7.8 -3.96624 | opp_overlap 14313, overlap 14313 TATCTCCACCATAAA TATAAGATACTTATGA ATTT TCATAGGTATCTTATT TTTTTATATCCATTT TERM 18 14313 - 14344 + F 100 -12.6 -5.72616 | opp_overlap 14313 14311 TCTCCACCATAAATA TAAGATACTTATGA ATTT TCATAGGTATCTTA TTTTTTTATATCCAT TERM 19 14344 - 14313 - f 91 -10.4 -3.57406 | opp_overlap 14313, overlap 14311 TCTCCACCATAAATA TAAGATACTTATGA ATTT TCATAGGTATCTTA TTTTTTTATATCCAT CLD_0812 14471 - 14923 + | hypothetical protein TERM 20 14975 - 14965 - g 81 -2.6 -5.74288 | opp_overlap 14965 AGAAAGAAGAAAAAA TATT GAA AATA TGTTAATGAAAAATA TERM 21 15284 - 15300 + G 70 -8.1 -3.1733 | opp_overlap 15284, overlap 15282 ATGTTGATGATAAAA TCTATGT ATG ACATAGA TAATTTTATAAAAAA TERM 22 15300 - 15284 - g 85 -8.1 -4.4648 | opp_overlap 15282 15284 ATGTTGATGATAAAA TCTATGT ATG ACATAGA TAATTTTATAAAAAA CLD_0811 14939 - 15460 + | putative transcriptional regulator CLD_0810 15462 - 16625 + | iron-sulfur cluster-binding protein TERM 23 16799 - 16809 + G 72 -2.6 -5.4492 | TTTTAATGATTCCTA TATT TAT AATA TTTTTTATATCTATA TERM 24 16929 - 16941 + G 71 -4.9 -4.79756 | CTTTATTTTTAACTT TATAG TAT CTATA TTTTTAGCTTATATA TERM 25 17025 - 17041 + G 75 -4.5 -5.02777 | overlap 17027 TAATGTGAAGGATCC TATCTTT TTT AAAGATG TTTCTTTTTATATAT CLD_0809 16630 - 19311 + | hypothetical protein TERM 26 19338 - 19376 + F 77 -4.7 -5.29385 | gap 1, opp_overlap 19344 19347, overlap 19344 ACTATGATTAATATC TGTA-AAGAACCCCATGT ATTT ATAAGGGGTTCTTATTCA TTTTTTGATTAAATT TERM 27 19344 - 19369 + F 79 -8.3 -4.0749 | opp_overlap 19344 19347, overlap 19338 ATTAATATCTGTAAA GAACCCCATGT ATTT ATAAGGGGTTC TTATTCATTTTTTGA CLD_0808 19448 - 20224 + | ErfK/YbiS/YcfS/YnhG family protein CLD_0807 20249 - 21646 + | oxidoreductase, FAD dependent CLD_0806 21663 - 22016 + | hypothetical protein TERM 28 22279 - 22309 + F 100 -11.9 -5.94214 | overlap 22275 GGGTGGCAACGCGGA GCTTTTCGTCCCT TTTAT AGGGACGAGGGGC TTTTTTTATTATATT TERM 29 22379 - 22353 - f 72 -8.2 -3.22091 | opp_overlap 22352, overlap 22354 22356 ATCTGAAGGGAGGAA GTATTTATTGGA TAA TCCAATAAATAA AATATTATGTTAGAT TERM 30 22378 - 22354 - f 85 -11.7 -2.52933 | opp_overlap 22352, overlap 22353 22356 TCTGAAGGGAGGAAG TATTTATTGGA TAA TCCAATAAATA AAATATTATGTTAGA TERM 31 22376 - 22356 - f 80 -9.9 -2.8007 | opp_overlap 22352, overlap 22354 22353 TGAAGGGAGGAAGTA TTTATTGGA TAA TCCAATAAA TAAAATATTATGTTA TERM 32 22782 - 22769 - g 70 -5.3 -4.65458 | TATAGAAATAAGAAA TTGGT TAGA ACCAA CAAAATTTGATTTTG serS 22386 - 23666 + | seryl-tRNA synthetase TERM 33 23717 - 23755 + T 70 -3.5 -5.3321 | gap 1, opp_overlap 23717 TTAATTTAAAATAAA CACTATTAAA-TTAATTA ATTG TGATAAAATTTAATAGTG TTTTTATTATTAGTT TERM 34 23987 - 23971 - T 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTACGGGTGACCGT TERM 35 24146 - 24171 + T 100 -9.9 -5.36441 | opp_overlap 24150 24169 CTCTTTCTCCGCCAA GGCATTTAACA CTAA TGTTAAATGTC TTTTTTATATAAAAA TERM 36 24494 - 24478 - T 72 -8.7 -2.52543 | AGTTGGTTTAAGGCA CCGGTCT TGA AAACCGG CGTACGGGTGACCGT TERM 37 24654 - 24678 + T 83 -6.6 -5.21236 | opp_overlap 24654 TCTTTCTCCGCCAAA GCATTTAATT CTTAA AGTTAAATGC TTTTTATTATAGGTT TERM 38 24693 - 24705 + T 74 -4.9 -5.09762 | CTTTTTATTATAGGT TGATT TAT AATCA TTTTTATGTTAAAAT TERM 39 24823 - 24844 + T 100 -11.7 -5.77571 | opp_overlap 24823 CACCATAAATAAAAA GTCTTTCGA TTTA TCGAAAGAC TTTTTATTTTTTGCT TERM 40 24844 - 24823 - T 100 -11.7 -5.40464 | opp_overlap 24823 CACCATAAATAAAAA GTCTTTCGA TTTA TCGAAAGAC TTTTTATTTTTTGCT psd 25735 - 24848 - | phosphatidylserine decarboxylase TERM 41 27092 - 27055 - H 85 -10.1 -3.27667 | opp_overlap 27057, overlap 27057 CATAAATTAATTTAA TATAGTAGTAGTGTAGA TTTG TCTACATTACTACTATT ACTTGTACAGGGAGG TERM 42 27057 - 27090 + H 100 -14.9 -3.44146 | opp_overlap 27055 27057 TAAATTAATTTAATA TAGTAGTAGTGTAGA TTTG TCTACATTACTACTA TTACTTGTACAGGGA TERM 43 27090 - 27057 - H 95 -12.7 -3.19205 | opp_overlap 27057, overlap 27055 TAAATTAATTTAATA TAGTAGTAGTGTAGA TTTG TCTACATTACTACTA TTACTTGTACAGGGA CLD_0798 27117 - 27965 + | antibiotic ABC transporter, ATP-binding protein TERM 44 27957 - 27947 - f 70 -4 -5.098 | overlap 27949 TAAAAATAAAATAAA TACT ATA AGTA TAGAATAGGATAGCT CLD_0797 27974 - 28807 + | hypothetical protein TERM 45 28871 - 28885 + G 72 -2.8 -5.45813 | AGAAAAATGTTGTAA CAAGCA TAC TGCTTA TTTTATTTTTTAATA CLD_0796 28819 - 29622 + | hypothetical protein TERM 46 30330 - 30345 + G 75 -4 -5.20333 | TATTTATGTGCGGAC CGTTTA TATT TGAACG TTTTTATTCTGGATG CLD_0795 29639 - 30451 + | hypothetical protein TERM 47 30594 - 30622 + T 100 -14.1 -4.65895 | opp_overlap 30591 30590 CTAATAAAAGAGGGA GATGTAGCACTAA AAA TTAGTGCTATATC TTTTTGGCTAAAAAA psd 31578 - 30691 - | phosphatidylserine decarboxylase TERM 48 31437 - 31449 + g 70 -3.5 -5.13354 | opp_overlap 31437, overlap 31442 AATAAAATCCATATA TTTTT GAA AAAAA TTTCTTTTTTATAAA TERM 49 31442 - 31453 + g 71 -3 -5.28778 | opp_overlap 31437, overlap 31437 AATCCATATATTTTT GAAA AAAA TTTC TTTTTTATAAATGCT CLD_0793 33279 - 31681 - | hypothetical protein TERM 50 32267 - 32290 + g 72 -2.6 -5.42975 | opp_overlap 32263 32267, overlap 32263 TAAATATCAAATAAA TAATTTATAT CTTC AAATAAATTA TTTTTATTTATATAA TERM 51 32525 - 32550 + g 71 -3.3 -5.33785 | opp_overlap 32525 32529 ATTTGTTTTAATATA GATATAGCTAA TTTA TGAGCTACATC TTTTTTATCATAATT TERM 52 33345 - 33327 - R 75 -5.3 -5.03227 | gap 1, opp_overlap 33327 33329 ATAGTATAAATAAAA GCCCTAAC CTTA GTT-GGGC TTATTAATATTATTT CLD_0792 33675 - 33355 - | hypothetical protein TERM 53 33903 - 33887 - H 75 -9.5 -2.71744 | opp_overlap 33894 33895 33899, overlap 33884 33882 33900 CAGTAGGATAGAGCA GCAGTTT CCT AAACTGC GTGTCGCAGGTTCGA TERM 54 33912 - 33900 - H 79 -9.1 -3.54741 | opp_overlap 33899 33895 33894, overlap 33887 33884 33882 CAGCAGTTTCCTAAA CTGCG TGT CGCAG GTTCGATTCCTGTCG TERM 55 33964 - 33941 - H 77 -6.9 -4.72272 | opp_overlap 33941 CGGGCGTACCAAAAA TCTTATAAC TTAATT GTTATAAGA TTTTTTATTTTTTGT TERM 56 33941 - 33964 + H 100 -6.9 -6.07374 | opp_overlap 33941 CGGGCGTACCAAAAA TCTTATAAC TTAATT GTTATAAGA TTTTTTATTTTTTGT CLD_0790 34069 - 35634 + | putative sensory box sigma-54 dependent transcriptional regulator TERM 57 35878 - 35846 - g 81 -10 -3.5241 | opp_overlap 35840, overlap 35844 CATTGGCGATAAACA GTTTGGTTCATTGG CAACT CCAATATACCAAAC GTCTACATTTATATT TERM 58 36708 - 36695 - g 70 -5.3 -4.57569 | TGAGCTTGCTAAAAA GCAAA TGAG TTTGC CCGGTGCTATGATTT megL 35778 - 36980 + | methionine gamma-lyase TERM 59 36997 - 37034 + F 86 -8.7 -4.42386 | opp_overlap 36996 37002, overlap 36985 36998 37002 TATTTTATAAAAAAT ATAAATGTTGATTCTTT ATGC AAGGAATCAACATTTGC TTTTATAAATAAAAA TERM 60 36998 - 37033 + F 93 -12.2 -3.2511 | opp_overlap 36996 37002, overlap 36985 36997 37002 ATTTTATAAAAAATA TAAATGTTGATTCTTT ATGC AAGGAATCAACATTTG CTTTTATAAATAAAA TERM 61 37002 - 37029 + F 95 -10.8 -4.27483 | opp_overlap 37002 36996, overlap 36998 36997 TATAAAAAATATAAA TGTTGATTCTTT ATGC AAGGAATCAACA TTTGCTTTTATAAAT TERM 62 37029 - 37002 - f 85 -8.6 -4.68607 | opp_overlap 36998 36997 37002, overlap 36996 TATAAAAAATATAAA TGTTGATTCTTT ATGC AAGGAATCAACA TTTGCTTTTATAAAT CLD_0788 37104 - 37541 + | cytidine/deoxycytidylate deaminase family protein TERM 63 38091 - 38108 + F 73 -3.4 -5.49579 | opp_overlap 38091, overlap 38099 AACAAGAATTTTAAA GGTACT ATTAAA GGTACC TTTTATTTTTTATAA TERM 64 38099 - 38113 + F 72 -3.6 -5.31275 | opp_overlap 38091, overlap 38091 TTTTAAAGGTACTAT TAAAGG TAC CTTTTA TTTTTTATAATAAAA dnaX 38186 - 39811 + | DNA polymerase III, gamma and tau subunits CLD_0785 39876 - 40217 + | hypothetical protein recR 40250 - 40846 + | recombination protein recR CLD_0783 40903 - 41166 + | hypothetical protein TERM 65 41213 - 41180 - f 90 -11.3 -3.15638 | opp_overlap 41180, overlap 41184 AAAATTTATATTTAA TAAACCATTAGAAAT ACAA AATTCTAATGGTTTA TTTTTTATTATTTTT TERM 66 41180 - 41213 + F 100 -11.3 -5.80727 | opp_overlap 41180 41184 AAAATTTATATTTAA TAAACCATTAGAAAT ACAA AATTCTAATGGTTTA TTTTTTATTATTTTT TERM 67 41209 - 41184 - f 78 -7.7 -4.23213 | opp_overlap 41180, overlap 41180 TTTATATTTAATAAA CCATTAGAAAT ACAA AATTCTAATGG TTTATTTTTTATTAT bofA 41316 - 41576 + | sigma-K factor processing regulatory protein BofA TERM 68 42284 - 42263 - g 95 -10.3 -4.08221 | TTTAATACAATTAAA TGGTGTAAA AAAA TTTACACCA AACCATAAAATGGAT sfsA 41727 - 42419 + | sugar fermentation stimulation protein CLD_0780 42475 - 42963 + | NUDIX family hydrolase CLD_0779 43081 - 43803 + | hypothetical protein TERM 69 43795 - 43841 + F 83 -7.5 -4.62102 | gap 1, opp_overlap 43791 43798 43805, overlap 43805 43833 AGAGAGGAAAATGAA CAATCCT-AAAGGAGCTTAAGT TTAA ACTTAAGCTCCTTTTAAGAAAG TTTTAATATTTTTGT TERM 70 43838 - 43798 - f 100 -14.4 -3.98107 | gap 1, opp_overlap 43795 43805 43833, overlap 43791 43805 GAGGAAAATGAACAA TCCT-AAAGGAGCTTAAGT TTAA ACTTAAGCTCCTTTTAAGA AAGTTTTAATATTTT TERM 71 43830 - 43805 - f 100 -14.9 -3.72453 | opp_overlap 43795 43805, overlap 43798 43791 ATGAACAATCCTAAA GGAGCTTAAGT TTAA ACTTAAGCTCC TTTTAAGAAAGTTTT TERM 72 43805 - 43830 + F 100 -14.9 -4.10855 | opp_overlap 43805 43798 43791, overlap 43795 ATGAACAATCCTAAA GGAGCTTAAGT TTAA ACTTAAGCTCC TTTTAAGAAAGTTTT CLD_0778 43937 - 44725 + | iron-sulfur cluster-binding protein CLD_0777 44744 - 44905 + | hypothetical protein TERM 73 45169 - 45209 + F 74 -5 -5.1286 | gap 1 TGTTTATGATTTAAA CCTCTATTCTTA-ATTTGA GCGG TTATATATAAGAATAGGGG TTTTTATAATTTTTG CLD_0776 45288 - 45992 + | ThiF domain-containing protein CLD_0775 46075 - 47184 + | major facilitator superfamily protein CLD_0774 47213 - 48157 + | acetyltransferase TERM 74 50033 - 50014 - T 75 -9.2 -2.65808 | opp_overlap 50017 50020, overlap 50011 50026 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 75 50081 - 50059 - T 72 -7.9 -3.50853 | overlap 50068 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 76 50103 - 50126 + T 90 -11.2 -3.18199 | GAATTCTCTGTTTAA TTTTGAGAGA CCAT TCTCTCAAAA TTAAGTTAAACATTA TERM 77 50399 - 50414 + T 73 -9 -2.79915 | opp_overlap 50399 50396, overlap 50401 50409 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 78 50414 - 50399 - T 72 -9 -2.69489 | opp_overlap 50399 50401 50409, overlap 50396 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 79 50558 - 50541 - T 76 -8.5 -3.695 | opp_overlap 50540 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 80 50724 - 50709 - T 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 81 50798 - 50787 - T 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 82 51620 - 51604 - T 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 83 53234 - 53218 - T 80 -8.1 -4.37092 | ATCTTTCTTAGAAAA CTCATTA TAC TAATGAG TACTAATTTAAAACG TERM 84 53501 - 53476 - T 75 -9.1 -3.21099 | opp_overlap 53477, overlap 53477 CCGGTGGATCACCAA GGCACTTTACA AAAT TGTAAAGTGCT TTTTATTTTTCAATA TERM 85 53477 - 53500 + T 100 -12.6 -5.63236 | opp_overlap 53476 53477 CGGTGGATCACCAAG GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTCAAT TERM 86 53500 - 53477 - T 89 -12.6 -2.52516 | opp_overlap 53477, overlap 53476 CGGTGGATCACCAAG GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTCAAT TERM 87 53671 - 53648 - T 77 -3.3 -5.64321 | ATAATAAAATAAAAA TCTATATCA GTCTCA TAATATAGA TTTTTATGAATACAA CLD_0768 54294 - 53698 - | uracil-DNA glycosylase family protein TERM 88 54626 - 54616 - H 71 -5.4 -4.63172 | opp_overlap 54616 CAGGAAACCATAAAA GCAA TTA TTGC TTAAATAATATAAAA TERM 89 55000 - 54985 - H 85 -6.2 -5.49809 | CAAATTTGAAAAAAA GTTCTT GACA AAGAAC AACAAATTTGATAAG TERM 90 56640 - 56621 - H 75 -9.2 -2.65808 | opp_overlap 56624 56627, overlap 56618 56633 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 91 56688 - 56666 - H 72 -7.9 -3.50853 | overlap 56675 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 92 56710 - 56733 + H 90 -11.2 -3.18199 | GAATTCTCTGTTTAA TTTTGAGAGA CCAT TCTCTCAAAA TTAAGTTAAACATTA TERM 93 57021 - 57006 - H 72 -9 -2.69489 | opp_overlap 57006 57008 57016, overlap 57003 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 94 57006 - 57021 + H 73 -9 -2.79915 | opp_overlap 57006 57003, overlap 57008 57016 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 95 57165 - 57148 - H 76 -8.5 -3.695 | opp_overlap 57147 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 96 57331 - 57316 - H 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 97 57405 - 57394 - H 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 98 58227 - 58211 - H 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 99 59841 - 59825 - H 80 -8.1 -4.37092 | ATCTTTCTTAGAAAA CTCATTA TAC TAATGAG TACTAATTTAAAACG TERM 100 60108 - 60083 - H 75 -9.1 -3.21099 | opp_overlap 60084, overlap 60084 CCGGTGGATCACCAA GGCACTTTACA AAAT TGTAAAGTGCT TTTTATTTTTCAATA TERM 101 60107 - 60084 - H 89 -12.6 -2.52516 | opp_overlap 60084, overlap 60083 CGGTGGATCACCAAG GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTCAAT TERM 102 60084 - 60107 + H 100 -12.6 -5.63236 | opp_overlap 60084 60083 CGGTGGATCACCAAG GCACTTTACA AAAT TGTAAAGTGC TTTTTATTTTTCAAT TERM 103 60288 - 60313 + H 70 -7.9 -3.37755 | opp_overlap 60287, overlap 60286 TTAAGATTAATGGAG TTTATAAAAAT AGTT ATTTTTATAAA TATTTAAGGCTATCT TERM 104 60472 - 60485 + G 72 -5.3 -4.77165 | opp_overlap 60472 CTAAAGTATAAAAAT TCCAA GGCA TTGGA TTTTATTGTAGAGGA CLD_0762 60424 - 60987 + | sigma-70 family RNA polymerase sigma factor CLD_0761 60984 - 62426 + | hypothetical protein TERM 105 62437 - 62470 + F 79 -4.7 -5.49729 | opp_overlap 62437 AATAAATAGAAGAAA TAAATCCCTAGAATA TTAA TAAATTAGGGATTTA TTTTTTTAGCTACTT TERM 106 62921 - 62906 - f 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC AACAGATTTGGTAAG TERM 107 64561 - 64542 - f 75 -9.2 -2.65808 | opp_overlap 64545 64548, overlap 64539 64554 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 108 64878 - 64863 - f 72 -9 -2.69489 | opp_overlap 64863 64865 64873, overlap 64860 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 109 64863 - 64878 + F 73 -9 -2.79915 | opp_overlap 64863 64860, overlap 64865 64873 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 110 65022 - 65005 - f 76 -8.5 -3.695 | opp_overlap 65004 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 111 65188 - 65173 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 112 65262 - 65251 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 113 67892 - 67907 + F 100 -7.6 -5.58209 | opp_overlap 67892 AGCCACCAGGAAAAA CTAGCA GTAA TGCTAG TTTTTTTGCGTTTCA TERM 114 67907 - 67892 - f 86 -7.6 -4.77438 | opp_overlap 67892 AGCCACCAGGAAAAA CTAGCA GTAA TGCTAG TTTTTTTGCGTTTCA CLD_0754 68144 - 68284 + | hypothetical protein CLD_0753 68539 - 68712 + | hypothetical protein CLD_0752 68848 - 69105 + | protein DltD CLD_0751 69182 - 69295 + | hypothetical protein TERM 115 69863 - 69848 - f 80 -6.2 -5.1361 | ACAAATTTGAAAAAA GTTCTT GACA AAGAAC GACAAATTTGATAAG TERM 116 71503 - 71484 - f 75 -9.2 -2.65808 | opp_overlap 71487 71490, overlap 71481 71496 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 117 71551 - 71529 - f 72 -7.9 -3.50853 | overlap 71538 CCTTTCTAAGGAGAA TAGAAAGAA GAAAA TTCTTTCTA AAGGCTGAATTCTCT TERM 118 71573 - 71596 + F 90 -11.2 -3.18199 | GAATTCTCTGTTTAA TTTTGAGAGA CCAT TCTCTCAAAA TTAAGTTAAACATTA TERM 119 71869 - 71884 + F 73 -9 -2.79915 | opp_overlap 71866 71869, overlap 71871 71879 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 120 71884 - 71869 - f 72 -9 -2.69489 | opp_overlap 71869 71871 71879, overlap 71866 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 121 72028 - 72011 - f 76 -8.5 -3.695 | opp_overlap 72010 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 122 72194 - 72179 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 123 72268 - 72257 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 124 73090 - 73074 - f 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 125 74896 - 74921 + F 100 -9.1 -5.31877 | opp_overlap 74896 CGAGCCACCAAAAAA GCATCTAAGAT ATTT ATCTTGGGTGC TTTTTTATAGTAAGT TERM 126 74921 - 74896 - f 74 -4.7 -5.1675 | opp_overlap 74896 CGAGCCACCAAAAAA GCATCTAAGAT ATTT ATCTTGGGTGC TTTTTTATAGTAAGT CLD_0744 75031 - 75774 + | peptidil-prolyl isomerase family protein TERM 127 75806 - 75787 - f 100 -9.4 -5.64304 | opp_overlap 75787 TAATATAATAAAAAA GATAGCAA ATGT TTGCTATC TTTTTTTATTTAATG TERM 128 75787 - 75806 + F 100 -9.4 -5.99154 | opp_overlap 75787 TAATATAATAAAAAA GATAGCAA ATGT TTGCTATC TTTTTTTATTTAATG TERM 129 77785 - 77766 - f 75 -9.2 -2.65808 | opp_overlap 77769 77772, overlap 77763 77778 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 130 78087 - 78102 + F 73 -9 -2.79915 | opp_overlap 78084 78087, overlap 78089 78097 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 131 78102 - 78087 - f 72 -9 -2.69489 | opp_overlap 78087 78089 78097, overlap 78084 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATCATGCACTGAAT TERM 132 78246 - 78229 - f 76 -8.5 -3.695 | opp_overlap 78228 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 133 78412 - 78397 - f 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 134 78486 - 78475 - f 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 135 81037 - 81062 + F 100 -12.1 -5.38951 | opp_overlap 81040 81043 AGATGATTATTAGGA TAAGAACTCAT TTAA ATGAGTTCTTA TTTTTTATATAAATT TERM 136 81059 - 81040 - f 82 -9.4 -3.45023 | opp_overlap 81037, overlap 81043 TGATTATTAGGATAA GAACTCAT TTAA ATGAGTTC TTATTTTTTATATAA CLD_0739 81393 - 82136 + | NAD-dependent deacetylase TERM 137 82133 - 82152 + T 82 -5.8 -5.48054 | opp_overlap 82133 AGCAATTAAAAAAAA CTAATCAA ATTT TTGGTTAG TTTTTTAATTTTAAT TERM 138 82152 - 82133 - T 83 -3.6 -5.96521 | opp_overlap 82133 AGCAATTAAAAAAAA CTAATCAA ATTT TTGGTTAG TTTTTTAATTTTAAT TERM 139 82287 - 82297 + T 71 -6.8 -4.15565 | opp_overlap 82294, overlap 82294 AAATCTGGGTGGCGC CTCC AAA GGAG TTTTAGGATACTAAA TERM 140 82317 - 82294 - T 95 -12.6 -3.53012 | opp_overlap 82287 82294 GGTGGCGCCTCCAAA GGAGTTTTAG GATA CTAAAACTCC TTTTTTAATAATTTA TERM 141 82294 - 82317 + T 100 -12.6 -5.243 | opp_overlap 82294, overlap 82287 GGTGGCGCCTCCAAA GGAGTTTTAG GATA CTAAAACTCC TTTTTTAATAATTTA CLD_0737 83230 - 82322 - | LD-carboxypeptidase family protein CLD_0736 84207 - 83266 - | CorA family protein TERM 142 83709 - 83728 + g 70 -3.6 -5.05601 | overlap 83704 83710 GAATAAGTTCTCTAT TCTTCATA GATT TATGAAGC TTTTTCTCTATCATC TERM 143 84367 - 84355 - H 82 -2.7 -6.20267 | opp_overlap 84351 TTAAAAATAAAAAAA CAAAC ATT GTTTA ATTTTTAACTATAAC CLD_0735 84572 - 85075 + | hypothetical protein TERM 144 85052 - 85087 + T 79 -7 -4.64334 | opp_overlap 85048 85057 85060, overlap 85057 85060 AAAATAAAATACTTA TCAAATAAGAGGCTAG CTAG CTAGTCTCTTATTCTA TTTTATTAAAAAATT TERM 145 85057 - 85082 + T 100 -11.3 -4.0865 | opp_overlap 85048 85057 85060, overlap 85052 85060 AAAATACTTATCAAA TAAGAGGCTAG CTAG CTAGTCTCTTA TTCTATTTTATTAAA TERM 146 85082 - 85057 - T 79 -9.1 -3.81154 | opp_overlap 85057 85052 85060, overlap 85048 85060 AAAATACTTATCAAA TAAGAGGCTAG CTAG CTAGTCTCTTA TTCTATTTTATTAAA TERM 147 85079 - 85060 - T 71 -6.4 -4.01902 | opp_overlap 85057 85052 85060, overlap 85057 ATACTTATCAAATAA GAGGCTAG CTAG CTAGTCTC TTATTCTATTTTATT TERM 148 85060 - 85079 + T 79 -8.6 -4.13421 | opp_overlap 85060 85057, overlap 85057 85052 ATACTTATCAAATAA GAGGCTAG CTAG CTAGTCTC TTATTCTATTTTATT CLD_0734 86240 - 85080 - | amidohydrolase-like protein TERM 149 85181 - 85159 - G 72 -7.8 -3.68619 | opp_overlap 85165 TCTAATGCAGTTAAA CTTAAGGCTT GAG AAGCTTTAAG GGCATTTTGTTGAGC TERM 150 85707 - 85686 - G 71 -8.9 -2.77007 | opp_overlap 85686, overlap 85683 AAGACCATTTAATGA TGAAAATAC ATTA GTATTTTCA TAGCTTAAGGTTTCA TERM 151 85686 - 85707 + g 70 -8.9 -2.56046 | opp_overlap 85686 85683 AAGACCATTTAATGA TGAAAATAC ATTA GTATTTTCA TAGCTTAAGGTTTCA CLD_0733 86494 - 86706 + | hypothetical protein TERM 152 86890 - 86909 + G 76 -6.4 -4.58466 | opp_overlap 86889 GAATAATAAAAGAGT CCGGCT ATCTTTTA AGCCGG TTTTATAATTCTAAA TERM 153 87891 - 87864 - g 88 -8.8 -4.48483 | opp_overlap 87869 TATAATAAAGATAAA TATAATTATAAT ATAA ATTATAATTATA TAGAAACTAATATGA CLD_0732 86685 - 88133 + | Orn/Lys/Arg decarboxylase CLD_0731 88157 - 88852 + | putative thymidylate kinase TERM 154 88890 - 88880 - f 70 -2.6 -5.61596 | ACTTGTATAAAAAAA TATA AAA TATA GGTAAGAAACTACAA CLD_0730 88933 - 89262 + | hypothetical protein TERM 155 89506 - 89493 - g 81 -3.9 -5.5112 | opp_overlap 89493 CCTATTAATAAAAAA TCTAT AGGT ATAGA TGATATAAGAAACTT CLD_0729 89280 - 90224 + | putative DNA polymerase III, delta prime subunit TERM 156 90925 - 90908 - g 72 -6.3 -4.29325 | GATCAATAGTTAAAA CTCCTTA TGGA CAAGGAG AAGTAGTAGATAATA CLD_0728 90226 - 91140 + | PSP1 domain-containing protein CLD_0727 91152 - 91355 + | hypothetical protein CLD_0726 91437 - 91607 + | ferredoxin, 4Fe-4S TERM 157 91616 - 91645 + F 100 -14.5 -4.22858 | opp_overlap 91622 91624, overlap 91622 AGACTAATTTATTGT TAAAAAGGCCGTC AAAA GACGGTCTTTTTA TTCTTTATATATTAT TERM 158 91639 - 91622 - f 77 -6.9 -4.60041 | opp_overlap 91616 91622, overlap 91624 ATTTATTGTTAAAAA GGCCGTC AAAA GACGGTC TTTTTATTCTTTATA TERM 159 91622 - 91639 + F 100 -9.1 -5.42164 | opp_overlap 91622 91624, overlap 91616 ATTTATTGTTAAAAA GGCCGTC AAAA GACGGTC TTTTTATTCTTTATA TERM 160 91715 - 91705 - f 70 -2.6 -5.62045 | ACACAGAATAAAAAA TTAT TAT ATAA AAGGTGAATTATATG CLD_0725 91728 - 92468 + | hypothetical protein CLD_0724 92488 - 93342 + | tetrapyrrole methylase family protein TERM 161 93378 - 93347 - f 95 -10.6 -4.2028 | opp_overlap 93340 93357, overlap 93340 TAGATATATAAATAA TTTATTATATTTTT TAAT AAAAATATAATAAA TAACAAGTTAAATTA TERM 162 94099 - 94086 - g 70 -3.7 -5.08483 | overlap 94089 GAAAATGAAAGAAAA GCAGC TGAA GCAGC ACAAAAACAAGCTGC CLD_0723 93498 - 94601 + | NlpC/P60 family protein TERM 163 94625 - 94658 + T 93 -12.7 -3.076 | opp_overlap 94625 94630, overlap 94630 TTTTATATAAAACAA CAAAAGTGGAAACTA AAAT TAGTTTCCACTTTTA GTTTATATAATTAAA TERM 164 94658 - 94625 - T 100 -14.9 -4.38141 | opp_overlap 94625 94630, overlap 94630 TTTTATATAAAACAA CAAAAGTGGAAACTA AAAT TAGTTTCCACTTTTA GTTTATATAATTAAA TERM 165 94630 - 94653 + T 100 -12.6 -4.65153 | opp_overlap 94625 94630, overlap 94625 TATAAAACAACAAAA GTGGAAACTA AAAT TAGTTTCCAC TTTTAGTTTATATAA TERM 166 94653 - 94630 - T 100 -12.6 -5.12916 | opp_overlap 94630 94625, overlap 94625 TATAAAACAACAAAA GTGGAAACTA AAAT TAGTTTCCAC TTTTAGTTTATATAA TERM 167 94693 - 94679 - T 88 -4.9 -5.98781 | opp_overlap 94679 TATAATTAAAAAAAA GCCCC TAGAT GAGGC TTTTAAATTATTTAT CLD_0722 94946 - 94701 - | AbrB family transcriptional regulator TERM 168 95294 - 95272 - H 70 -4.3 -4.92783 | overlap 95263 95273 AATTTATTATAAAAA GTAATTTTA TAAAT TAAAACTAC AATACAATATAATAA CLD_0721 95753 - 96364 + | hypothetical protein TERM 169 96385 - 96439 + F 100 -20 -4.84359 | opp_overlap 96389, overlap 96389 96437 TTTTGTGTATTTTTA TAGATCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGATTTA TTTTTGTAAAAGTAA TERM 170 96389 - 96435 + F 100 -18.6 -4.96501 | opp_overlap 96389, overlap 96385 GTGTATTTTTATAGA TCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGA TTTATTTTTGTAAAA TERM 171 96435 - 96389 - f 100 -14.2 -2.88544 | opp_overlap 96389 96385 GTGTATTTTTATAGA TCACTTAAAAAGTTATTATTAA TCC TTAATAATGGCTTTTTAAGTGA TTTATTTTTGTAAAA arcA 96786 - 97997 + | arginine deiminase TERM 172 98010 - 98047 + T 81 -7.3 -4.77157 | gap 1, opp_overlap 98012 98015, overlap 98012 TAAAATATAAATTCA AATAAGAGTTCACTTATA AAT TA-AGGTGAACTCTTATA TTTTTGGTAAATTAA TERM 173 98045 - 98012 - T 86 -9.2 -3.93913 | gap 1, opp_overlap 98010 98012, overlap 98015 AAATATAAATTCAAA TAAGAGTTCAC-TTA TAAAT TAAGGTGAACTCTTA TATTTTTGGTAAATT TERM 174 98012 - 98045 + T 93 -9.9 -3.9993 | gap 1, opp_overlap 98012 98015, overlap 98010 AAATATAAATTCAAA TAAGAGTTCACTTATA AAT TA-AGGTGAACTCTTA TATTTTTGGTAAATT TERM 175 98042 - 98015 - T 71 -6.5 -4.06633 | gap 1, opp_overlap 98012 98010, overlap 98012 TATAAATTCAAATAA GAGTTCAC-TTA TAAAT TAAGGTGAACTC TTATATTTTTGGTAA ispF 98550 - 98083 - | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase TERM 176 98624 - 98608 - H 100 -10.9 -5.79526 | ATACTTTAAAAAAAA GTGCAAC AAA GTTGCAC CTTAAGATATATTTT TERM 177 98716 - 98704 - H 70 -3.5 -5.44119 | opp_overlap 98711, overlap 98711 TTTATTGTAAAAAAA TAAAA GCT TTTTA CGTAAAAAATTATGC CLD_0718 99286 - 100155 + | polysaccharide deacetylase family protein TERM 178 100370 - 100409 + T 100 -11.8 -5.30686 | opp_overlap 100367 100370 100372 100375 TTATTAATAGAATGA TATAACAGTTTATATTAC CTGG GAAATATAAGCTGTTATA TTTTTTATAAATATT TERM 179 100409 - 100370 - T 78 -9.6 -2.95751 | opp_overlap 100370, overlap 100367 100372 100375 TTATTAATAGAATGA TATAACAGTTTATATTAC CTGG GAAATATAAGCTGTTATA TTTTTTATAAATATT CLD_0717 100666 - 100424 - | hypothetical protein TERM 180 100749 - 100761 + H 77 -3.5 -5.63236 | opp_overlap 100740 100749, overlap 100740 AACAAATATATCATA TATAT TAA ATATA TTTTTGTTTTTAAAT TERM 181 101300 - 101329 + G 73 -3.7 -5.26918 | gap 1, overlap 101305 TACCAGCTATAATAG TTACATCCACAGCA GCC TTTTGTGGA-GTAA TTTTTTGTAAAATAT spmA 100786 - 101361 + | spore maturation protein A CLD_0715 101374 - 101892 + | spore maturation protein B CLD_0714 103474 - 102137 - | MATE efflux family protein TERM 182 102776 - 102796 + g 72 -4.2 -5.14698 | GTATTTGAAACGACT TATATTAA TGTTC TTAATATA TTTTATTTTAGGTTT udgA 103618 - 104190 + | uracil-DNA glycosylase CLD_0712 104219 - 104653 + | MarR family transcriptional regulator TERM 183 104968 - 105000 + F 100 -15.9 -5.5208 | opp_overlap 104966 104982 ACAGCGAAATTTACG CCTCTATATAAAACT AAA GGTTTTATATAGAGG TTTTTTATATTATAA TERM 184 106639 - 106627 - g 72 -4.9 -4.88295 | overlap 106619 AAACAAAGCTAAAAA TATAG CAC CTATA AAAGAAGAAATAACT metG 105035 - 106972 + | methionyl-tRNA synthetase TERM 185 107003 - 107039 + F 100 -10.3 -4.75372 | opp_overlap 107003, overlap 107007 ATATCAAATTAAGAA CTAAGCTGTTGACAAAT AAA GTTTGTTAGCAGCTTTG TTTTTGGTACATAAT TERM 186 107007 - 107035 + F 100 -9.7 -4.91852 | opp_overlap 107003, overlap 107003 CAAATTAAGAACTAA GCTGTTGACAAAT AAA GTTTGTTAGCAGC TTTGTTTTTGGTACA TERM 187 107164 - 107112 - f 75 -7.8 -4.01184 | gap 1, opp_overlap 107113 107114 107116 107124, overlap 107114 107117 ATATATTATCATAAA CAGAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGGGACATA TERM 188 107163 - 107114 - f 95 -11.5 -3.59266 | opp_overlap 107113 107114 107116 107124, overlap 107112 107117 ATATTATCATAAACA GAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 189 107114 - 107163 + F 85 -11.5 -2.57211 | opp_overlap 107114 107112 107117, overlap 107113 107116 107124 ATATTATCATAAACA GAGTTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 190 107160 - 107117 - f 86 -11.8 -2.61255 | opp_overlap 107116 107114 107113 107124, overlap 107114 107112 TTATCATAAACAGAG TTCTTGGCTTCAGGGGGAGT TTTT ACTCCCACTAAAGCTTAGAA ATCGTTATCCAGGGA TERM 191 107909 - 107892 - g 83 -2.1 -5.95539 | gap 1 TTTTAAATAAAAAAA TAGGTAAT ATA ATT-CCTA ATAACTTTACCTCAA CLD_0710 107267 - 108772 + | hypothetical protein TERM 192 109277 - 109265 - g 80 -6.3 -4.92385 | overlap 109276 GATATTCAAATAAAA GCTTT TAA AAAGC AAATGGAATTAGCAG CLD_0709 108923 - 109717 + | TatD family hydrolase CLD_0708 109945 - 111003 + | 3D/G5 domain-containing protein TERM 193 111010 - 111027 + F 100 -9.9 -5.80817 | opp_overlap 111009 111012 TTAGATTAATTTAAG TAGGAGC GTTA GCTCCTA TTTTTTTCTATTAAA CLD_0707 111076 - 111621 + | primase-related protein ksgA 111623 - 112450 + | dimethyladenosine transferase TERM 194 113454 - 113440 - g 81 -2.9 -5.68438 | TGATGAAATAAAAAA TTGTA TTTGG TACAA AATAGATGCTAAAGA CLD_0705 112529 - 113770 + | hypothetical protein TERM 195 113768 - 113793 + F 100 -9.1 -5.57729 | opp_overlap 113768 113770, overlap 113770 TTAATACCTGTTAAA TAGAGGCATGT TAAT ACATGTCTCTG TTTTTTATGTTGTTT TERM 196 113770 - 113791 + F 93 -9.5 -4.38219 | opp_overlap 113770 113768, overlap 113768 AATACCTGTTAAATA GAGGCATGT TAAT ACATGTCTC TGTTTTTTATGTTGT CLD_0704 113927 - 114514 + | hypothetical protein TERM 197 114540 - 114586 + F 100 -18.3 -4.89852 | opp_overlap 114556 GTGTCGAAGTTGATA TGCTCCCCTTAAGGAAGAT AGATTAAAA ATCTACCTTAAGGGGAGCA TTTTTGTGCATATAA CLD_0703 114679 - 115512 + | putative lipoprotein TERM 198 115562 - 115518 - f 83 -7.9 -4.65747 | opp_overlap 115503 115519 115531, overlap 115520 115531 GAACTTTTAATAAAA GATTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAAAT AAATTAATTATAGGA TERM 199 115519 - 115561 + F 91 -13.6 -2.62043 | opp_overlap 115518 115520 115531, overlap 115503 115531 AACTTTTAATAAAAG ATTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAAA TAAATTAATTATAGG TERM 200 115560 - 115520 - f 100 -14.9 -3.93768 | opp_overlap 115503 115519 115531, overlap 115518 115531 ACTTTTAATAAAAGA TTCTTGTAAAACCCCATGC ATT GCGTGGGGTTTTGCAAAAA ATAAATTAATTATAG TERM 201 115531 - 115549 + F 100 -12.4 -4.08216 | opp_overlap 115531 115520 115518, overlap 115519 AAGATTCTTGTAAAA CCCCATGC ATT GCGTGGGG TTTTGCAAAAAATAA TERM 202 115549 - 115531 - f 93 -10.2 -4.09511 | opp_overlap 115519 115531, overlap 115520 115518 AAGATTCTTGTAAAA CCCCATGC ATT GCGTGGGG TTTTGCAAAAAATAA CLD_0702 115680 - 116741 + | RND family marcrolide efflux protein CLD_0701 116752 - 117447 + | putative macrolide efflux ABC transporter, ATP-binding protein CLD_0700 117444 - 118652 + | putative macrolide efflux ABC transporter, permease protein CLD_0699 118734 - 119576 + | ATPase TERM 203 119623 - 119568 - f 100 -24 -2.85019 | opp_overlap 119568 119574 119619 119620, overlap 119574 119577 119580 AACTTTAAAAATTTA TATAAATAATAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTATTTATA TTTAAAATATAGTTA TERM 204 119568 - 119623 + F 100 -26.2 -3.65313 | opp_overlap 119568 119574 119577 119580, overlap 119574 119619 119620 AACTTTAAAAATTTA TATAAATAATAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTATTTATA TTTAAAATATAGTTA TERM 205 119574 - 119617 + F 100 -20.8 -4.33928 | opp_overlap 119568 119574 119577 119580, overlap 119568 AAAAATTTATATAAA TAATAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTA TTTATATTTAAAATA TERM 206 119617 - 119574 - f 100 -18.6 -4.13805 | opp_overlap 119574 119568, overlap 119568 119577 119580 AAAAATTTATATAAA TAATAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTATTA TTTATATTTAAAATA TERM 207 119614 - 119577 - f 100 -15.9 -4.16301 | opp_overlap 119574 119568, overlap 119574 119568 119580 AATTTATATAAATAA TAATAAGGCTTCAATGA ATAT TCATTGAGGCCTTATTA TTATTTATATTTAAA TERM 208 119611 - 119580 - f 100 -13.2 -4.18983 | opp_overlap 119574 119568, overlap 119577 119574 119568 TTATATAAATAATAA TAAGGCTTCAATGA ATAT TCATTGAGGCCTTA TTATTATTTATATTT CLD_0698 119716 - 119907 + | iron-sulfur cluster-binding protein CLD_0697 119922 - 120116 + | hypothetical protein CLD_0696 120529 - 120353 - | hypothetical protein TERM 209 121208 - 121192 - g 82 -6.7 -4.95167 | CAATTAATAATAAAA TCTTTTA TGG TAAAAGA AGAATTAATACATAA CLD_0695 120607 - 121677 + | putative diguanylate cyclase CLD_0694 121734 - 122462 + | mgtC family protein TERM 210 122470 - 122513 + F 100 -17.3 -5.0538 | opp_overlap 122470 TATTATGATGAAAAA TAACAAGAACATATATTTT TAAAAT AAAATATATGTTCTTGTTA TTTTTTGCAGTAAAA TERM 211 122513 - 122470 - f 100 -17.3 -4.78107 | opp_overlap 122470 TATTATGATGAAAAA TAACAAGAACATATATTTT TAAAAT AAAATATATGTTCTTGTTA TTTTTTGCAGTAAAA TERM 212 123842 - 123820 - g 72 -7.8 -3.67296 | TACTATTTATTTAAA TTAGCTGCTA AAA TAGCAGGTAA GAGAATGAACCCTAC TERM 213 124136 - 124126 - g 76 -2.6 -5.54894 | AATGTACTAAAAAAA TTAA GAG TTAA AGATTTACCTTTTGT nrdD 122752 - 124893 + | anaerobic ribonucleoside-triphosphate reductase nrdG 124910 - 125425 + | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 214 125483 - 125525 + T 100 -24 -3.48276 | opp_overlap 125483 125488, overlap 125488 TAGATAACTATTTAA TAAAAGGGTGTATAACTTTA AAA TAAAGTTATACACCCTTTTA TTGTCTACAAAGAAA TERM 215 125525 - 125483 - T 100 -24 -3.15677 | opp_overlap 125483 125488, overlap 125488 TAGATAACTATTTAA TAAAAGGGTGTATAACTTTA AAA TAAAGTTATACACCCTTTTA TTGTCTACAAAGAAA TERM 216 125488 - 125520 + T 100 -19.5 -4.84311 | opp_overlap 125488 125483, overlap 125483 AACTATTTAATAAAA GGGTGTATAACTTTA AAA TAAAGTTATACACCC TTTTATTGTCTACAA TERM 217 125520 - 125488 - T 100 -19.5 -4.69656 | opp_overlap 125483 125488, overlap 125483 AACTATTTAATAAAA GGGTGTATAACTTTA AAA TAAAGTTATACACCC TTTTATTGTCTACAA TERM 218 125666 - 125643 - T 77 -6.8 -4.72188 | opp_overlap 125643 TGAAGTGAAAAGAAA TAGAAAGCAA GCTA TAGCTTTCTA TTCTACGATTTAGAC CLD_0691 125861 - 125718 - | hypothetical protein TERM 219 125752 - 125762 + g 74 -5.4 -4.86385 | CCGGCAAGAATATCT TCAG TAG CTGA TTTGTTTTTGGGCGT CLD_0690 126634 - 125960 - | hypothetical protein TERM 220 126029 - 126039 + g 70 -4 -4.9218 | opp_overlap 126029 TGCTATAAAAATTAA TACA TAG TGTA TTTTTGTAGTAAATA CLD_0689 126974 - 126636 - | PadR family transcriptional regulator TERM 221 127097 - 127073 - R 73 -7.3 -4.15118 | TAAAATAATAAAAGA TAGCTATTTTT ATT ACAAATAGCTA AATCGTATTAAGTAT CLD_0688 127733 - 127095 - | putative zinc-dependent hydrolase TERM 222 128104 - 128125 + H 89 -4.4 -5.99154 | overlap 128095 GTATAGCGAATGTAA CTTCGTCC TATTAT GGATGGAG TTTTTTTGTTTAATA TERM 223 130799 - 130781 - g 76 -9 -3.48914 | overlap 130777 TGAAATAAAACCTAA TTTACCTA TAC TAGGTAAA AAGTATGGAAGATTT ileS 128175 - 131291 + | isoleucyl-tRNA synthetase TERM 224 131304 - 131338 + F 100 -10.3 -5.58179 | opp_overlap 131301 131302, overlap 131301 131306 131315 TAGCACGTATAATTT TATGCATAGAATAAA AATTG TTTATTCTATGCACA TTTTTTATTATAATA TERM 225 131306 - 131336 + F 93 -12.9 -2.94342 | opp_overlap 131301 131302, overlap 131301 131304 131315 GCACGTATAATTTTA TGCATAGAATAAA AATTG TTTATTCTATGCA CATTTTTTATTATAA TERM 226 131944 - 131931 - g 74 -6.7 -4.3487 | overlap 131934 ATAGATAATTTAAAA GCATC TTTA GATGC TACAGAATACTTAAT CLD_0686 131442 - 132440 + | LacI family transcription regulator TERM 227 136221 - 136235 + G 76 -2.9 -5.60689 | CAGTAAGTAGAGCTA GAAAT CAAAT ATTTC TTTTTTATTCTATAG CLD_0685 132656 - 136708 + | hypothetical protein CLD_0684 136783 - 137850 + | putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase TERM 228 137855 - 137888 + F 100 -13.5 -5.63645 | opp_overlap 137855 AATATATATAAAAAA TAGTATGGATATTAA TTTT TTGATATCCATACTA TTTTTTATATTTTCA TERM 229 137888 - 137855 - f 100 -11.3 -5.46276 | opp_overlap 137855 AATATATATAAAAAA TAGTATGGATATTAA TTTT TTGATATCCATACTA TTTTTTATATTTTCA TERM 230 138955 - 138941 - g 88 -5.8 -5.58522 | TACACAAAACAAAAA TTTTCA TAT TGAAAA AGTTGGATATGGTAT CLD_0683 138186 - 139487 + | hypothetical protein CLD_0682 139492 - 140298 + | hypothetical protein CLD_0681 140318 - 141064 + | hypothetical protein TERM 231 141081 - 141109 + F 100 -14.9 -5.83822 | opp_overlap 141067 141081 141084, overlap 141071 141067 TGTTATTATTTTAAA TAACTTAGTGATT TTA AATCACTAAGTTA TTTTTTTTGAATATA TERM 232 141109 - 141081 - f 100 -14.9 -3.62096 | opp_overlap 141071 141067 141081, overlap 141067 141084 TGTTATTATTTTAAA TAACTTAGTGATT TTA AATCACTAAGTTA TTTTTTTTGAATATA TERM 233 141106 - 141084 - f 100 -12.2 -3.94634 | opp_overlap 141081, overlap 141081 TATTATTTTAAATAA CTTAGTGATT TTA AATCACTAAG TTATTTTTTTTGAAT TERM 234 141829 - 141841 + G 72 -4.9 -4.97402 | opp_overlap 141829, overlap 141823 GATATTTATGAAAAA TACAA CGA TTGTA TTTTTATGCCTTTTA TERM 235 141841 - 141829 - g 71 -4.9 -4.76041 | opp_overlap 141823 141829 GATATTTATGAAAAA TACAA CGA TTGTA TTTTTATGCCTTTTA CLD_0680 141289 - 142671 + | radical SAM domain-containing protein TERM 236 142697 - 142720 + F 100 -9 -5.50774 | opp_overlap 142697 TCTTATATAAATTAA GGTATTTCAT TTTA ATGAGATACC TTTTTATTTATTCTA TERM 237 143518 - 143485 - g 79 -5.5 -5.01811 | opp_overlap 143493 TTATTAAATGAAAAA GGAATTTACTATTTT GATA AAGATAGTAAATTAC AAATAGATCAACCTG CLD_0679 142858 - 144132 + | putative sugar-binding protein TERM 238 144195 - 144224 + T 100 -8.8 -5.57729 | opp_overlap 144195 TAAAAAAGTATTTAA GAGTCAAAATTT AAGAAA AAATTTTGGCTC TTTTTTATATTATTT CLD_0678 145349 - 144234 - | putative mannosyltransferase TERM 239 144430 - 144416 - G 72 -8.6 -2.98453 | overlap 144415 144418 TATTAATACAACAAT CAGAAG TAA CTTCTG GAATAGAGGTAACGT CLD_0677 145515 - 146525 + | putative spore coat protein TERM 240 146649 - 146630 - g 74 -2.2 -5.65513 | CAGGAATTAAAAAAA TCTGTTAA AAAT TTAAAAGA AATAAAGAAAAGAAA CLD_0676 146540 - 146734 + | hypothetical protein CLD_0675 146761 - 147528 + | hypothetical protein TERM 241 148065 - 148038 - g 77 -5.8 -4.91459 | opp_overlap 148041, overlap 148060 TAATATCCATAAAAA TAAGAATGAATT TGAT AATTTATTCTTA TCAGAAGTAGATTAC CLD_0674 147541 - 148554 + | putative spore coat protein TERM 242 148620 - 148568 - T 93 -10 -3.99444 | gap 1, opp_overlap 148579 148580 148615 148619, overlap 148570 148572 148618 AATAAGAGTTATAAA CAGAGTTCTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAA-CAG ACTTCTAGGAGTTTT TERM 243 148620 - 148570 - T 95 -12.1 -3.57639 | gap 1, opp_overlap 148579 148580 148615 148619, overlap 148568 148572 148618 TAAGAGTTATAAACA GAGTT-CTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAACAG ACTTCTAGGAGTTTT TERM 244 148618 - 148572 - T 100 -19.1 -3.3539 | gap 1, opp_overlap 148579 148580 148615, overlap 148568 148570 AGAGTTATAAACAGA GTT-CTAAGCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGCTTATTAAC AGACTTCTAGGAGTT TERM 245 148579 - 148610 + T 100 -21.8 -3.62522 | opp_overlap 148572 148568 148570, overlap 148580 TAAACAGAGTTCTAA GCTTCAGAGGGAGT TTTT ACTCCCTCTGAAGC TTATTAACAGACTTC TERM 246 148615 - 148653 + T 89 -12.1 -2.90615 | opp_overlap 148572 148568 148570 148618 148620, overlap 148619 148620 148622 CCCTCTGAAGCTTAT TAACAGACTTCT-AGGAGT TTT ACTCCTTAGAAGTC-GTTA TACTTTAGGGGAAAT TERM 247 148650 - 148618 - T 80 -9.4 -3.18681 | opp_overlap 148615 148619 148620 148622, overlap 148568 148570 148620 TCTGAAGCTTATTAA CAGACTTCT-AGGAGT TTT ACTCCTTAGAAGTC-G TTATACTTTAGGGGA TERM 248 148619 - 148650 + T 83 -9.6 -3.60151 | gap 1, opp_overlap 148568 148570 148618 148620, overlap 148615 148620 148622 CTGAAGCTTATTAAC AGACTTCT-AGGAGT TTT ACTCCTTAGAAGTCG TTATACTTTAGGGGA TERM 249 148649 - 148620 - T 100 -13.1 -3.15574 | gap 1, opp_overlap 148620 148619 148615 148622, overlap 148618 TGAAGCTTATTAACA GACTTCT-AGGAGT TTT ACTCCTTAGAAGTC GTTATACTTTAGGGG TERM 250 148620 - 148649 + T 91 -13.1 -2.75769 | gap 1, opp_overlap 148618 148620, overlap 148619 148615 148622 TGAAGCTTATTAACA GACTTCT-AGGAGT TTT ACTCCTTAGAAGTC GTTATACTTTAGGGG TERM 251 148622 - 148647 + T 80 -9.9 -2.92144 | gap 1, opp_overlap 148620 148618, overlap 148620 148619 148615 AAGCTTATTAACAGA CTTCT-AGGAGT TTT ACTCCTTAGAAG TCGTTATACTTTAGG CLD_0673 150035 - 148908 - | glycosyl transferase, group 1 family protein TERM 252 150219 - 150209 - g 71 -6.8 -4.00407 | ATTGAAAAACTTAAA CCTC ATA GAGG AGTGTATCATTTAAA cotS 150152 - 151156 + | spore coat protein CotS TERM 253 151164 - 151204 + F 85 -10 -3.25538 | opp_overlap 151154 151161 151165 151169, overlap 151161 151163 151165 AAGAATAATGAATAC ATTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAAA TAGTTTTATTAACAA TERM 254 151203 - 151165 - f 75 -9.1 -3.23854 | opp_overlap 151165 151164 151161 151163, overlap 151154 151161 151169 AGAATAATGAATACA TTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA ATAGTTTTATTAACA TERM 255 151165 - 151203 + F 91 -13.5 -2.54841 | opp_overlap 151154 151161 151165 151169, overlap 151164 151161 151163 AGAATAATGAATACA TTAAGGCATATGAAGCT TATGT AGTTTTATATGCCTTAA ATAGTTTTATTAACA CLD_0671 151280 - 152182 + | peptidase family protein TERM 256 152486 - 152475 - g 71 -3 -5.31855 | GAGGAAGAAGAAAAA CATT TGTT AATG AAGGTGTACTAGAAG CLD_0670 152378 - 152614 + | hypothetical protein TERM 257 152620 - 152640 + F 100 -11.3 -6.69613 | opp_overlap 152620 152617 TGTATTATAAATGGA TTGGTACTT AAT AAGTACCAA TTTTTTTTTTTATGC TERM 258 152640 - 152620 - f 83 -11.3 -2.72152 | opp_overlap 152620, overlap 152617 TGTATTATAAATGGA TTGGTACTT AAT AAGTACCAA TTTTTTTTTTTATGC CLD_0669 152716 - 154278 + | LysM domain-containing protein TERM 259 154383 - 154337 - f 74 -8.1 -3.40022 | gap 1, opp_overlap 154344 154345 154380 TAAAGGATAAACAGA GTT-CTTGGCTTCAGAGGGAGT TTTT ACCCCCTCTGAAGCTTATTAAC AGAATTCTTAGGAGT TERM 260 154344 - 154375 + F 100 -17.4 -3.62522 | opp_overlap 154337, overlap 154345 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACCCCCTCTGAAGC TTATTAACAGAATTC TERM 261 154380 - 154419 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 154337 154388, overlap 154384 154385 154387 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 262 154385 - 154415 + F 79 -9.8 -2.75769 | opp_overlap 154388, overlap 154384 154380 154387 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 263 154412 - 154388 - f 90 -10.1 -3.71552 | opp_overlap 154387 154385 154384 154380 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 264 154546 - 154589 + F 86 -7.7 -4.87665 | opp_overlap 154547, overlap 154547 ATATATAAATAAAAA AGCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGCA TTTTTGTGCATAAAA TERM 265 154588 - 154547 - f 100 -9 -5.76237 | opp_overlap 154546 154547 TATATAAATAAAAAA GCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGC ATTTTTGTGCATAAA TERM 266 154547 - 154588 + F 95 -11.2 -3.52117 | opp_overlap 154547, overlap 154546 TATATAAATAAAAAA GCTCTATATGACAATAAT AGTATA AGTATTGTTATATAGAGC ATTTTTGTGCATAAA CLD_0668 154575 - 154688 + | hypothetical protein TERM 267 154687 - 154671 - gf 73 -3.7 -5.27335 | overlap 154681 TTTTGCAAAGAAAAA TACAAGG TAA CCTCATA ATCATAGGAGGAGCT cphB 154658 - 155458 + | cyanophycinase cphA 155502 - 158123 + | cyanophycin synthetase TERM 268 158165 - 158126 - f 81 -10.4 -2.66435 | gap 1, opp_overlap 158126, overlap 158131 AGCTTTAGCATAGGA TTAAAGCTACAATTTATGA ATA TCATGA-TTGTAGCTTTAA TTTTTTTGATGTATT TERM 269 158126 - 158165 + F 100 -12.6 -5.62219 | gap 1, opp_overlap 158126 158131 AGCTTTAGCATAGGA TTAAAGCTACAATTTATGA ATA TCATGA-TTGTAGCTTTAA TTTTTTTGATGTATT ispE 158216 - 159058 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase TERM 270 159318 - 159272 - f 72 -8.2 -3.18912 | gap 2, opp_overlap 159283, overlap 159273 TTATCCAGGGACGAA TCCGCTCT-TTACTCCCA-CTT TGAAG AAGATGGGAGTATTAGAGCGGG TAGTCATCGGATAAA TERM 271 159317 - 159273 - f 85 -11.7 -2.51133 | gap 2, opp_overlap 159283, overlap 159272 TATCCAGGGACGAAT CCGCTCT-TTACTCCCA-CTT TGAAG AAGATGGGAGTATTAGAGCGG GTAGTCATCGGATAA TERM 272 159439 - 159451 + G 76 -3.5 -5.48054 | GAAGAATAATAGGCA TATTT GAT AAATA TTTTTTAATTTTAAT CLD_0664 159420 - 159617 + | hypothetical protein CLD_0663 159678 - 161138 + | spore germination protein TERM 273 161957 - 161929 - g 100 -11.3 -4.51699 | overlap 161921 ATAACCATGATAAAA TCAATAAATATAC CAG GTACATTTATTGA AAGATGGGAAGGTAT CLD_0662 161158 - 162255 + | spore germination protein CLD_0661 162305 - 163483 + | Ger(x)C family germination protein CLD_0660 163556 - 164188 + | stage II sporulation protein R TERM 274 164219 - 164195 - T 83 -7.3 -5.08878 | opp_overlap 164193 164195 AAGAGATAAATAAAA CTCTGTATT TGAAAAT AATACAGAG TAATTTTATAACAAA CLD_0659 165466 - 164225 - | hypothetical protein TERM 275 165031 - 165010 - G 78 -10.3 -2.73067 | opp_overlap 165015, overlap 165003 165012 165015 CTGAATTAGATACTA CATAAGCAT CCGT ATGCTTATG AATCCAAAAACTATG ypeB 165839 - 167209 + | germination protein YpeB TERM 276 167263 - 167210 - f 100 -23.2 -3.87112 | opp_overlap 167215 167221 167225 167257, overlap 167221 167225 GAATTAACAATATAA TATAATACAAATAAAGAGTGAATA ATAGTG TATTCACTCTTTATTTGTATTATA ATAATAGTTATTGAA TERM 277 167215 - 167258 + F 100 -18.7 -3.45737 | opp_overlap 167210 167221 167225, overlap 167221 167225 167257 AACAATATAATATAA TACAAATAAAGAGTGAATA ATAGTG TATTCACTCTTTATTTGTA TTATAATAATAGTTA TERM 278 167221 - 167252 + F 100 -11.9 -4.29304 | opp_overlap 167221 167210 167225, overlap 167215 167225 ATAATATAATACAAA TAAAGAGTGAATA ATAGTG TATTCACTCTTTA TTTGTATTATAATAA TERM 279 167252 - 167221 - f 100 -11.9 -4.35348 | opp_overlap 167215 167221 167225, overlap 167210 167225 ATAATATAATACAAA TAAAGAGTGAATA ATAGTG TATTCACTCTTTA TTTGTATTATAATAA TERM 280 167225 - 167248 + F 85 -8.3 -4.70921 | opp_overlap 167221 167210 167225, overlap 167221 167215 TATAATACAAATAAA GAGTGAATA ATAGTG TATTCACTC TTTATTTGTATTATA TERM 281 167248 - 167225 - f 85 -8.3 -4.70921 | opp_overlap 167225 167221 167215, overlap 167221 167210 TATAATACAAATAAA GAGTGAATA ATAGTG TATTCACTC TTTATTTGTATTATA CLD_0657 167311 - 168291 + | hypothetical protein TERM 282 168292 - 168280 - f 73 -3.5 -5.48825 | GATTATTTAAAAAAA TTTAT AAT ATAAA TATAAGGAAAAGGAA CLD_0656 168316 - 168744 + | hypothetical protein CLD_0655 168876 - 169175 + | hypothetical protein TERM 283 169401 - 169378 - f 71 -6.8 -4.13767 | CTTTGGAGGTGAAAA CTGCTTTATT ATAT ATTAAAGCAG GGAAGATATGAGCAC pyrG 169409 - 171010 + | CTP synthase TERM 284 171284 - 171245 - f 100 -14.6 -2.90615 | gap 1, opp_overlap 171248 171249 171281, overlap 171248 171249 171251 171267 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTGTTA ATAAGCTTCAGTGGG TERM 285 171280 - 171248 - f 95 -12.1 -3.60151 | opp_overlap 171248 171249, overlap 171245 171249 171251 171267 TCCCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTAAGAAGTCT GTTAATAAGCTTCAG TERM 286 171248 - 171281 + F 93 -11.9 -3.1886 | gap 1, opp_overlap 171248 171245 171249 171251 171267, overlap 171249 TCCCCTAAAGGATAA C-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTG TTAATAAGCTTCAGT TERM 287 171249 - 171279 + F 100 -15.6 -3.15574 | opp_overlap 171248 171245 171249 171251 171267, overlap 171248 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTCA TERM 288 171279 - 171249 - f 100 -15.6 -2.75769 | opp_overlap 171249 171248, overlap 171248 171245 171251 171267 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTCA TERM 289 171277 - 171251 - f 89 -12.4 -2.92144 | opp_overlap 171249 171248, overlap 171249 171248 171245 171267 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTAAGAAG TCTGTTAATAAGCTT TERM 290 171320 - 171289 - f 100 -14.5 -3.62522 | opp_overlap 171281, overlap 171307 GAAGTCTGTTAATAA GCTTCAGTGGGAG TAAAAG CTCCCTCTGAAGC GAAGAACTCTGTTTA CLD_0653 171510 - 171854 + | hypothetical protein TERM 291 171850 - 171879 + F 77 -5.1 -5.4433 | overlap 171854 AAATATATATGATGG TTTAGAGTAACTT TCAA AAGTTACTCTTTA TTTTTATTTATATAT TERM 292 171854 - 171875 + F 100 -10.3 -5.1502 | overlap 171850 ATATATGATGGTTTA GAGTAACTT TCAA AAGTTACTC TTTATTTTTATTTAT rho 172026 - 173471 + | transcription termination factor Rho TERM 293 173508 - 173480 - T 100 -14.9 -4.85653 | opp_overlap 173480 173485 173505, overlap 173485 TAGATAGAAAATAAA TAAAACCTAATCT GAA AGATTAGGTTTTA TACTATTTAACGTCT TERM 294 173480 - 173508 + T 100 -14.9 -2.85565 | opp_overlap 173480 173485, overlap 173485 173505 TAGATAGAAAATAAA TAAAACCTAATCT GAA AGATTAGGTTTTA TACTATTTAACGTCT TERM 295 173503 - 173485 - T 100 -10.4 -5.28281 | opp_overlap 173480 173485, overlap 173480 AGAAAATAAATAAAA CCTAATCT GAA AGATTAGG TTTTATACTATTTAA TERM 296 173485 - 173503 + T 100 -10.4 -4.58303 | opp_overlap 173485 173480, overlap 173480 AGAAAATAAATAAAA CCTAATCT GAA AGATTAGG TTTTATACTATTTAA rpmE 173729 - 173511 - | ribosomal protein L31 tdk 173956 - 174531 + | thymidine kinase CLD_0649 174548 - 175465 + | hypothetical protein CLD_0648 175473 - 176324 + | HemK family modification methylase prfA 176406 - 177482 + | peptide chain release factor 1 CLD_0646 177510 - 178118 + | hypothetical protein CLD_0645 178177 - 178896 + | ZIP transporter family protein TERM 297 179616 - 179592 - g 71 -7.1 -3.7175 | overlap 179584 179583 179594 AAAAAGCCAGGTAAA GACCTGAAACC AAA GGCTCCAGGTA TGAAATATAGACACT TERM 298 179614 - 179594 - g 81 -9.7 -3.42684 | overlap 179584 179583 179592 AAAGCCAGGTAAAGA CCTGAAACC AAA GGCTCCAGG TATGAAATATAGACA CLD_0644 178917 - 179972 + | Sua5/YciO/YrdC/YwlC family protein CLD_0643 179981 - 180433 + | low molecular weight protein tyrosine phosphatase rpiB 180493 - 180930 + | ribose 5-phosphate isomerase B upp 180960 - 181589 + | uracil phosphoribosyltransferase TERM 299 181652 - 181699 + T 100 -8.3 -5.37043 | opp_overlap 181652 181656 181659 AATACTTTTAGTAAA TAGATAACTATAAAAATAA AGAATAATAA TTATTTTTATAGTTATTTA TTTTTTCTATAAGAT CLD_0640 181993 - 181817 - | hypothetical protein TERM 300 182806 - 182793 - g 74 -6.7 -4.28656 | AGGGAAGAGCTAAAA GTACC TCGA GGTAC TAGATATGAACTGTG CLD_0639 182598 - 183086 + | cytidine/deoxycytidylate deaminase family protein TERM 301 183357 - 183332 - g 86 -6.2 -5.35222 | opp_overlap 183351, overlap 183333 AAAATTCATAAAAAA CCTATACCAC TTTTAG GTGGTATAGC AATATACATATCTTT TERM 302 183356 - 183333 - g 86 -9.7 -3.78693 | opp_overlap 183351, overlap 183332 AAATTCATAAAAAAC CTATACCAC TTTTAG GTGGTATAG CAATATACATATCTT TERM 303 183590 - 183605 + G 71 -4.8 -4.81551 | opp_overlap 183590 GATCACCTTAACTTA TATGTA GGAT TACATA TTTTTGCTATACCTA tagO 183194 - 184228 + | UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase mnaA 184242 - 185399 + | UDP-N-acetylglucosamine 2-epimerase TERM 304 185654 - 185634 - f 70 -2.7 -5.59564 | opp_overlap 185637 185639, overlap 185637 185646 AGAAATTTAAAAAAA TAGTATAAA TAA TTTATATTA AATAGAATATTGCGA TERM 305 186015 - 186038 + G 74 -8.4 -3.55824 | overlap 186009 186012 TTTGTTTTTTATTAG GATTAATATT AGCT AATATTAATC TATTTATAAATGCTA CLD_0636 185891 - 186259 + | putative ATP synthase protein I TERM 306 186682 - 186695 + G 76 -5.3 -5.05606 | AGTTATTTTCTAGGA TATGG TAAG CCATA TTTATTTTTATTGCC atpB 186274 - 186954 + | ATP synthase F0, A subunit atpE 186994 - 187233 + | ATP synthase F0, C subunit TERM 307 187285 - 187239 - f 90 -11.3 -3.20878 | opp_overlap 187244, overlap 187244 187252 TAAGATTTAAGGTAA TTTAATTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAATTTAA GGCCGAAGGGAGGCT TERM 308 187244 - 187280 + F 100 -13.4 -3.53012 | opp_overlap 187239 187244 187252 TTTAAGGTAATTTAA TTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAA TTTAAGGCCGAAGGG TERM 309 187280 - 187244 - f 90 -11.2 -3.20991 | opp_overlap 187244, overlap 187239 187252 TTTAAGGTAATTTAA TTTTATAAGTACCTAT TTATT ATAGGTGCTTATAAAA TTTAAGGCCGAAGGG atpF 187309 - 187788 + | ATP synthase F0, B subunit TERM 310 188000 - 188015 + G 71 -4.8 -4.8083 | opp_overlap 188000 187998 188003, overlap 188003 TAAAGACAAAGTAGA TGATAA AATT TTATCA TTTTTACTAGTATTA atpH 187791 - 188330 + | ATP synthase F1, delta subunit atpA 188341 - 189855 + | ATP synthase F1, alpha subunit TERM 311 190402 - 190417 + G 82 -7.6 -4.45544 | TCAGAGTTTTATTCA CCTGTT AAGC AACAGG TTTTAATTAATAAAA atpG 189877 - 190725 + | ATP synthase F1, gamma subunit TERM 312 191224 - 191211 - g 72 -5.3 -4.78107 | CAGGAGTAGGAAAAA CTGTA TTAA TACAG GAATTAATAAATAAT atpD 190739 - 192130 + | ATP synthase F1, beta subunit atpC 192155 - 192556 + | ATP synthase F1, epsilon subunit TERM 313 192570 - 192625 + F 100 -18.1 -5.30686 | opp_overlap 192578 AGAGAAAGCTTTATA GCTTACAAGGTATACATAACTTT GACATTAAAA AATGTTATGTATACCTTGTAAGC TTTTTTGTAAGTATT CLD_0627 192750 - 193457 + | hypothetical protein murA 193481 - 194737 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 314 194753 - 194799 + F 82 -9.9 -3.02109 | gap 1, opp_overlap 194765, overlap 194765 194795 AATTTAATAATTGTG TATGATAAATAACTCATGGTGA TTAT TCGCTATGAGTT-TTTATTATA TATATATAAACTTTT TERM 315 194765 - 194788 + F 95 -8.2 -5.27206 | opp_overlap 194765, overlap 194753 GTGTATGATAAATAA CTCATGGTGA TTAT TCGCTATGAG TTTTTATTATATATA TERM 316 194825 - 194802 - f 71 -8.4 -2.94218 | opp_overlap 194795 194806, overlap 194804 194806 AGTTTTTATTATATA TATATAAACT TTTG AGTTTATATA TCAAGCTTATTTAAA spoIID 195007 - 196083 + | stage II sporulation protein D TERM 317 196159 - 196196 + F 89 -10 -3.62522 | TAAACAGAGTTCTTG GCTTTAGAGGGAGT TTTTATTTTT ACTCCCACTAAAGC TTATTAACAGAATTC TERM 318 196201 - 196240 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 196209, overlap 196205 196206 196208 CCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 319 196206 - 196236 + F 79 -9.8 -2.75769 | opp_overlap 196209, overlap 196205 196201 196208 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 320 196233 - 196209 - f 90 -10.1 -3.71552 | opp_overlap 196208 196206 196205 196201 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLD_0624 196676 - 197422 + | putative peptidase TERM 321 197460 - 197429 - f 74 -8.7 -2.99381 | AAATATTAATAAGGA TGCCATTTTCCGC TTTTAT GCGGAAAGTGGCT AAATATAAATGAATT spoIIID 197530 - 197784 + | stage III sporulation protein D CLD_0622 197884 - 198912 + | mbl protein TERM 322 198941 - 198988 + T 100 -15.4 -3.272 | gap 1, opp_overlap 198941 198943 198948, overlap 198948 198982 ATATAAATGACTACA TAT-AAAATTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAATTTTTATA TTAATGTAAAATAAT TERM 323 198988 - 198941 - T 100 -15.4 -2.912 | gap 1, opp_overlap 198941 198948 198982, overlap 198943 198948 ATATAAATGACTACA TAT-AAAATTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAATTTTTATA TTAATGTAAAATAAT TERM 324 198985 - 198943 - T 100 -15.2 -2.99874 | opp_overlap 198941 198948 198982, overlap 198941 198948 ATAAATGACTACATA TAAAATTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAATTTTT ATATTAATGTAAAAT TERM 325 198948 - 198980 + T 100 -15.1 -5.13344 | opp_overlap 198943 198941 198948, overlap 198941 TGACTACATATAAAA TTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAA TTTTTATATTAATGT TERM 326 198980 - 198948 - T 100 -15.1 -4.62984 | opp_overlap 198948 198941, overlap 198943 198941 TGACTACATATAAAA TTAAAGCTCTTGAGT AAT ACTCATGAGCTTTAA TTTTTATATTAATGT CLD_0621 199561 - 199037 - | hypothetical protein TERM 327 199571 - 199602 + r 87 -10.4 -3.24423 | opp_overlap 199569 199568 199584 ATTCAAAACACACCC CTCCTTATATTAAT ATAT ATGAATATAAGGAG TTAAATATTATTGGA CLD_0620 200332 - 199610 - | hypothetical protein TERM 328 200173 - 200203 + g 74 -2.1 -5.53991 | gap 1, opp_overlap 200180, overlap 200175 200180 ATGTTATAGCTATTA AATCAAA-TTTTTC AGGA GAAAAACTTTGATA TTTTTTTAGTAGATG TERM 329 200348 - 200395 + H 85 -10.4 -3.0464 | opp_overlap 200352 200360, overlap 200350 200352 200360 200360 200362 CATATTCCTCCCTAG TATATGTATAAATTTATATTAT AAAT ATATTATAAATTAATACATATA TATTACAAATAAATT TERM 330 200350 - 200393 + H 71 -8.6 -3.07895 | opp_overlap 200352 200360, overlap 200348 200352 200360 200360 200362 TATTCCTCCCTAGTA TATGTATAAATTTATATTAT AAAT ATATTATAAATTAATACATA TATATTACAAATAAA TERM 331 201000 - 201022 + H 100 -12.2 -5.49568 | opp_overlap 201000 TCCTCCTCCACCAAA CATCTTTACT TAA AGTAAAGATG TTTTTATTTTGCATT TERM 332 201022 - 201000 - H 95 -12.2 -3.72576 | opp_overlap 201000 TCCTCCTCCACCAAA CATCTTTACT TAA AGTAAAGATG TTTTTATTTTGCATT TERM 333 201147 - 201135 - g 74 -6.3 -4.37348 | AATAATAATAAAGAA CTCTT ATC AAGAG AGGTGGAGGGAAAAG CLD_0613 201099 - 201233 + | hypothetical protein TERM 334 201273 - 201255 - f 81 -8.9 -3.8969 | opp_overlap 201255 GTAGTTAGACAATAA CCTCTTC TTATT GAAGAGG TTTTATTTTTTAGAC TERM 335 201255 - 201273 + F 100 -8.9 -5.42198 | opp_overlap 201255 GTAGTTAGACAATAA CCTCTTC TTATT GAAGAGG TTTTATTTTTTAGAC TERM 336 201816 - 201804 - g 90 -6.3 -5.57396 | opp_overlap 201802 201804 AGAAGTAAGAAAAAA TGGTA CAT TACCA TATTTGAGACCAGAT metK 201316 - 202491 + | S-adenosylmethionine synthetase TERM 337 202511 - 202549 + F 100 -9.1 -5.19212 | gap 1, opp_overlap 202517, overlap 202517 ATATTAGTATTAATA TGAAAAGGAATGGACATG ATAA CATG-CCATTCCTTTATA TTTTTTCATAATAAT TERM 338 202517 - 202543 + F 100 -10.3 -4.66347 | gap 1, opp_overlap 202517, overlap 202511 GTATTAATATGAAAA GGAATGGACATG ATAA CATG-CCATTCC TTTATATTTTTTCAT TERM 339 202543 - 202517 - f 100 -10.3 -4.44797 | gap 1, opp_overlap 202517 202511 GTATTAATATGAAAA GGAATGGACATG ATAA CATG-CCATTCC TTTATATTTTTTCAT TERM 340 202620 - 202605 - f 85 -6.2 -5.46698 | opp_overlap 202605 GCTAAAATTAAAAAA GTATAG ATTC CTATAC TTATAAGCAGCGGTA CLD_0611 202682 - 204916 + | RecD/TraA family helicase CLD_0610 204942 - 205964 + | hypothetical protein TERM 341 206525 - 206536 + GF 75 -5.8 -4.81814 | opp_overlap 206525 GATGTTTTAACCACA GGAG CGAC CTCC TTTTATTGTGCTAAT CLD_0609 205937 - 206614 + | comF protein,-like protein TERM 342 206842 - 206870 + F 91 -8.3 -4.93898 | opp_overlap 206845 CTAATTTTAACTAAT TGAGGCTTATAGT ATA ACTATAGGTCTTA TTTTTATAATAATAT TERM 343 207140 - 207158 + G 70 -8.2 -3.12351 | ATTTTTCAACCCTGA TGTAGTTG CAA CAGCTACA TTGAGTGTACACAAA yfiA 207039 - 207566 + | ribosomal subunit interface protein TERM 344 207604 - 207631 + F 100 -10.1 -4.99035 | opp_overlap 207604 AAAGAATTAGTAAAA GTAGACATATA CAAGGA TATATGTCTAC TTTTTATATAGATAA TERM 345 207631 - 207604 - f 100 -10.8 -4.40037 | opp_overlap 207604 AAAGAATTAGTAAAA GTAGACATATAC AAGG ATATATGTCTAC TTTTTATATAGATAA secA 207794 - 210301 + | preprotein translocase, SecA subunit TERM 346 211462 - 211452 - g 88 -4 -5.72622 | CTCATAAAGAAAAAA TAGA AGA TCTA ACAGGAGAACTAAAG prfB 210656 - 211633 + | peptide chain release factor 2 TERM 347 211710 - 211670 - T 71 -6.5 -4.09685 | opp_overlap 211665 GGGGATGCCTTAAAA TAGATTTAATTTCAACATC ATA AATATAAAAATTAAATCTA TTTTATTTTGAGACA TERM 348 211881 - 211832 - T 78 -10.1 -2.57211 | opp_overlap 211832 211834, overlap 211831 211834 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGACAAGAACTC TGCTTATAATAAATA CLD_0605 213247 - 211898 - | peptidase family protein TERM 349 212037 - 212055 + g 100 -11.8 -4.90296 | opp_overlap 212039 TTTATAATTTTTAAT GATGCTAC ATT GTAGCATC TTTTTATAGAATTTT TERM 350 212053 - 212039 - G 71 -8.6 -2.74019 | opp_overlap 212037 TATAATTTTTAATGA TGCTAC ATT GTAGCA TCTTTTTATAGAATT CLD_0604 213355 - 215511 + | RNA-binding protein TERM 351 215742 - 215719 - f 82 -9.6 -3.45737 | opp_overlap 215720, overlap 215720 TAACTATGATTACAA GGCCCTGATA GTAT TATCAGGGCT TTTTATTTTTCACTT TERM 352 215741 - 215720 - f 91 -13.1 -2.6696 | opp_overlap 215720, overlap 215719 AACTATGATTACAAG GCCCTGATA GTAT TATCAGGGC TTTTTATTTTTCACT TERM 353 215720 - 215741 + F 100 -13.1 -5.63236 | opp_overlap 215720 215719 AACTATGATTACAAG GCCCTGATA GTAT TATCAGGGC TTTTTATTTTTCACT TERM 354 216234 - 216224 - g 70 -5.4 -4.64334 | overlap 216225 AATTTTCCAATAAAA GCTA TAG TAGC CATAGGAAATAAATT CLD_0603 215795 - 216388 + | hypothetical protein TERM 355 216518 - 216508 - f 73 -5.4 -4.80453 | opp_overlap 216508 216512 TTATTATAAAACAAA GAAG GGA CTTC TTATATTACACTTTT TERM 356 217880 - 217863 - g 87 -8.5 -4.79053 | AAACATTAAAACAAA GCCAATA GAGG TATTGGC TAATAAAGGACAAAT CLD_0602 216799 - 218448 + | hypothetical protein CLD_0601 218469 - 218729 + | hypothetical protein CLD_0600 218743 - 219429 + | Ser/Thr protein phosphatase family protein CLD_0599 219513 - 219794 + | ArsR family transcriptional regulator CLD_0598 219834 - 222287 + | pyridine nucleotide-disulphide oxidoreductase family protein TERM 357 222289 - 222333 + T 100 -17 -3.5944 | opp_overlap 222289 222300, overlap 222300 ATTTATTCATATAAA TAAAATAAAAATCCTATGGA ACATG TTCATAGGATTTTTATTTTA TTTAGAAATCTAGAT TERM 358 222333 - 222289 - T 100 -14.8 -4.06678 | opp_overlap 222289 222300, overlap 222300 ATTTATTCATATAAA TAAAATAAAAATCCTATGGA ACATG TTCATAGGATTTTTATTTTA TTTAGAAATCTAGAT TERM 359 222322 - 222300 - T 84 -4.9 -5.67711 | opp_overlap 222289 222300, overlap 222289 TAAATAAAATAAAAA TCCTATGGA ACATG TTCATAGGA TTTTTATTTTATTTA TERM 360 222300 - 222322 + T 93 -7.1 -5.67711 | opp_overlap 222300 222289, overlap 222289 TAAATAAAATAAAAA TCCTATGGA ACATG TTCATAGGA TTTTTATTTTATTTA CLD_0597 223169 - 222315 - | hypothetical protein CLD_0596 223326 - 224114 + | RelA/SpoT domain-containing protein CLD_0595 224265 - 224378 + | hypothetical protein leuS 226859 - 224418 - | leucyl-tRNA synthetase TERM 361 225112 - 225128 + g 73 -5.9 -4.59376 | TTTATATAATCATCA GGAGATA TAG TATTTCC TTTTGATTTACTCAT TERM 362 226386 - 226403 + g 70 -4.1 -4.96501 | opp_overlap 226382, overlap 226382 AGTATTACAACTTGG GCACC AATTTACA GGTGC TTTCTTTTTATAAGC TERM 363 226975 - 226946 - R 86 -3.7 -6.14618 | gap 1 TATAAAATAAAAAAA CCTTCATCTCC-TA ACT TATAGAGACGAAAG GTTATCCGCGGTACC CLD_0593 227640 - 227236 - | hypothetical protein TERM 364 227518 - 227536 + g 74 -5.4 -4.89393 | TGATATTATATGCTT TATTTCTT CTG GAGAAATA TTTTTGTAAGCTTTA TERM 365 227801 - 227787 - R 70 -4.4 -4.93454 | CAAAGAAAGATAAAA TTTTAT AAA ATAAAA AAGAGTCCTTAAGAA TERM 366 227822 - 227804 - R 100 -8.2 -5.86976 | opp_overlap 227804 TTATAAAATAAAAAA GAGTCCTT AAG AAGAACTC TTTTGGCTGCCCATG CLD_0591 228478 - 227954 - | hypothetical protein CLD_0590 229102 - 228503 - | DnaJ family molecular chaperone CLD_0589 229964 - 229089 - | hypothetical protein TERM 367 229563 - 229547 - G 75 -9.5 -2.94411 | opp_overlap 229545 229547, overlap 229546 229549 AGCTTTTCAAAGAAT TATCCAC AGT GTGGATA TGTTTTTCATATAAA TERM 368 229547 - 229563 + g 86 -9.5 -4.02302 | opp_overlap 229547 229546 229549, overlap 229545 AGCTTTTCAAAGAAT TATCCAC AGT GTGGATA TGTTTTTCATATAAA TERM 369 229723 - 229733 + g 88 -4 -5.72622 | AGTGCTTCGTTATCG GTTA TAA TAAC TTTTTTCTTTATAGG CLD_0588 230507 - 229968 - | putative adenylyl cyclase CyaB TERM 370 230655 - 230674 + H 77 -5.2 -5.40004 | opp_overlap 230655, overlap 230668 TTGATTTTGGTAAAA TATTTTAT ATTT ATAAAATA TTTTTTAATTTAATA CLD_0587 230814 - 231851 + | hypothetical protein TERM 371 232057 - 232097 + T 100 -13.8 -3.52079 | gap 1, opp_overlap 232057 TTAATATGAAAAAAA TAGTAGATAGATTTATTCT TAAC AGAA-AAATCTATCTACTA TTATATCAAATATTA TERM 372 232097 - 232057 - T 100 -13.8 -5.63374 | gap 1, opp_overlap 232057 TTAATATGAAAAAAA TAGTAGATAGATTTATTCT TAAC AGAA-AAATCTATCTACTA TTATATCAAATATTA fba 233058 - 232132 - | fructose-1,6-bisphosphate aldolase, class II TERM 373 233126 - 233114 - R 75 -9.1 -3.19091 | opp_overlap 233096 233114, overlap 233100 ATAGGGACGCATTAA GTCCC TAT GGGAC TTTTATTTATTAACT TERM 374 233114 - 233126 + r 100 -9.1 -5.10665 | opp_overlap 233100 233114, overlap 233096 ATAGGGACGCATTAA GTCCC TAT GGGAC TTTTATTTATTAACT CLD_0585 233568 - 233284 - | hypothetical protein CLD_0584 234353 - 233685 - | hypothetical protein TERM 375 235987 - 235969 - g 74 -2.4 -5.58454 | opp_overlap 235955, overlap 235972 TGTATATTAAAAAAA TATGCTCT TGC AGAACTTA ACAAAATAGATAAAA TERM 376 236039 - 236049 + G 72 -4 -5.01732 | opp_overlap 236039, overlap 236032 236040 CAACTAGGTTAAAAA GTTT TTT AAAC TTTTTTAAAGAAGTT CLD_0583 234478 - 236136 + | putative threonyl-tRNA synthetase/uridine kinase TERM 377 236286 - 236254 - f 72 -8.4 -3.20878 | TAATATTTAAGCTAA TGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLD_0582 236534 - 236671 + | hypothetical protein TERM 378 236786 - 236816 + F 93 -7.8 -5.14965 | opp_overlap 236786 AACAGAGTAAAAAAA GATCTTAAAATGAT ATC ATTTTTTTAAGATC TTTTTTGATAGAAAT TERM 379 236816 - 236786 - f 82 -5.6 -5.62219 | opp_overlap 236786 AACAGAGTAAAAAAA GATCTTAAAATGAT ATC ATTTTTTTAAGATC TTTTTTGATAGAAAT TERM 380 236851 - 236876 + F 100 -14.9 -2.87983 | opp_overlap 236849, overlap 236837 236848 TTGGCACAGTCAACT TGCCACTTACT AAAT AGTAAGTGGCA TCATATTTCCCTTAT TERM 381 237128 - 237102 - g 85 -11 -3.16881 | opp_overlap 237098 237103, overlap 237105 TAGTTATGGGATTAA GTACTGTAACTC CAG GAGTTACAGTAT TCGCTTCTGAATTAA TERM 382 237103 - 237127 + G 100 -14.5 -3.2496 | opp_overlap 237102 237105, overlap 237098 AGTTATGGGATTAAG TACTGTAACTC CAG GAGTTACAGTA TTCGCTTCTGAATTA TERM 383 237125 - 237105 - g 100 -12.7 -2.78547 | opp_overlap 237103 237098, overlap 237102 TTATGGGATTAAGTA CTGTAACTC CAG GAGTTACAG TATTCGCTTCTGAAT CLD_0581 237008 - 237730 + | hypothetical protein CLD_0580 237752 - 237985 + | hypothetical protein TERM 384 238036 - 238065 + F 95 -12.3 -3.35476 | opp_overlap 238042, overlap 238042 AAAAAATCTAATAAG AAAAAACTGGCTG AATT CAGCCAGTTTTTA TATTATACTTAATTA TERM 385 238059 - 238042 - f 100 -11.3 -5.64873 | opp_overlap 238036 238042 TCTAATAAGAAAAAA CTGGCTG AATT CAGCCAG TTTTTATATTATACT TERM 386 238042 - 238059 + F 100 -11.3 -5.16133 | opp_overlap 238042, overlap 238036 TCTAATAAGAAAAAA CTGGCTG AATT CAGCCAG TTTTTATATTATACT TERM 387 238204 - 238241 + F 88 -5.1 -5.97979 | opp_overlap 238204 238207, overlap 238207 AACATTGAAGCCAAA TAAGCTATAAGTATTGA AGTT TAAATATTTATAGCCTA TTTTTTTATTATTCT TERM 388 238402 - 238416 + F 73 -7.2 -4.11371 | opp_overlap 238402 238400 238398 238406 AGCATGACAAATAGA GCAATT AAA AATTGC TTTTAAAAAATATTA CLD_0579 238698 - 238919 + | hypothetical protein CLD_0578 239051 - 239182 + | hypothetical protein TERM 389 239253 - 239288 + T 84 -4.8 -5.79588 | opp_overlap 239263, overlap 239263 239283 TTTAAGTTATTAATA ATAAAAAAAATCGTGG AAAA CCACGATTTTTTAAAA TTTTTTTAATTTTAC TERM 390 239278 - 239263 - T 100 -9 -6.22691 | opp_overlap 239263 239253 TAATAATAAAAAAAA TCGTGG AAAA CCACGA TTTTTTAAAATTTTT TERM 391 239263 - 239278 + T 100 -9 -5.16472 | opp_overlap 239263, overlap 239253 TAATAATAAAAAAAA TCGTGG AAAA CCACGA TTTTTTAAAATTTTT pssA 239804 - 239283 - | CDP-diacylglycerol--serine O-phosphatidyltransferase TERM 392 239576 - 239566 - G 71 -6.8 -3.97108 | AAGGTTAAAATAGAA GGTG CTA CACC AAAAGAAACTAAATC CLD_0576 239991 - 240407 + | CBS domain-containing protein TERM 393 240447 - 240417 - f 70 -7 -3.68036 | opp_overlap 240417, overlap 240415 AATTAGGTTAAAATA TCCACAGGATTT ATTGTTA AAATCTTGTGGA TTTGCTATTATATAA TERM 394 240417 - 240447 + F 86 -9.2 -3.99275 | opp_overlap 240417 240415 AATTAGGTTAAAATA TCCACAGGATTT ATTGTTA AAATCTTGTGGA TTTGCTATTATATAA TERM 395 241331 - 241375 + G 81 -9.5 -3.66658 | overlap 241329 AGATGGAGAAAGAGG TCCAGACTTTCCTTTGCAGAT AGA ATGTGTAAAAGAAGGTTTGGA TATTTTGGGCATATT CLD_0575 240513 - 241397 + | hypothetical protein CLD_0574 241471 - 242115 + | hypothetical protein TERM 396 242363 - 242395 + T 90 -6.5 -5.71983 | opp_overlap 242368 ATTTAATAATATATA AAAAATAAACAGC ACTAGAG GCTGTTTATTTTC TTTTTTTGTGCTTAG TERM 397 242390 - 242368 - T 88 -6.4 -5.48787 | opp_overlap 242363 ATAATATATAAAAAA TAAACAGC ACTAGAG GCTGTTTA TTTTCTTTTTTTGTG CLD_0573 244319 - 242388 - | radical SAM domain-containing protein TERM 398 244728 - 244742 + H 78 -4.2 -5.54907 | TTAGTTATGGATAGG GAGCTT AGT GGGCTC TTTTTGTTTTGTAAA CLD_0572 244914 - 246179 + | PRC-barrel domain/MgtE domain/CBS domain-containing protein TERM 399 246246 - 246283 + F 100 -18.9 -6.09196 | opp_overlap 246246 AACAAATATAAAAAA CACATGTAATAAACTTA TGGA TAAGTTTATTACATGTG TTTTTTTATTTTCGA TERM 400 246283 - 246246 - f 100 -18.9 -5.61913 | opp_overlap 246246 AACAAATATAAAAAA CACATGTAATAAACTTA TGGA TAAGTTTATTACATGTG TTTTTTTATTTTCGA sleB 246408 - 247103 + | spore-cortex-lytic enzyme TERM 401 247427 - 247394 - f 72 -8.3 -3.2661 | opp_overlap 247385 247396, overlap 247392 247396 GAACCACGGAGAATA TACTTCGTCTCTATA TTTT TATAGAGATGAAGTT TTTTTATATTAAGTT TERM 402 247425 - 247396 - f 90 -10.9 -3.19212 | opp_overlap 247385 247396, overlap 247394 247392 ACCACGGAGAATATA CTTCGTCTCTATA TTTT TATAGAGATGAAG TTTTTTTATATTAAG TERM 403 247396 - 247425 + F 100 -13.1 -5.80817 | opp_overlap 247396 247394 247392, overlap 247385 ACCACGGAGAATATA CTTCGTCTCTATA TTTT TATAGAGATGAAG TTTTTTTATATTAAG cysK 247467 - 248381 + | cysteine synthase A cysE 248396 - 248992 + | serine O-acetyltransferase TERM 404 249200 - 249234 + G 81 -7.3 -4.62772 | opp_overlap 249200 249202 249210, overlap 249202 TTTCAATATATGAAA GAGGGAAAAACAATA ATTTC TATTGCTTTTCCCTA TTTATTTAATTTAGG TERM 405 249234 - 249200 - g 93 -10.2 -3.93262 | opp_overlap 249200 249202, overlap 249202 249210 TTTCAATATATGAAA GAGGGAAAAACAATAA TTT CTATTGCTTTTCCCTA TTTATTTAATTTAGG TERM 406 249202 - 249232 + G 90 -9.9 -3.91294 | opp_overlap 249200 249202 249210, overlap 249200 TCAATATATGAAAGA GGGAAAAACAATA ATTTC TATTGCTTTTCCC TATTTATTTAATTTA TERM 407 249232 - 249202 - g 100 -12.8 -3.55205 | opp_overlap 249202 249200, overlap 249200 249210 TCAATATATGAAAGA GGGAAAAACAATAA TTT CTATTGCTTTTCCC TATTTATTTAATTTA TERM 408 249846 - 249834 - g 74 -7.7 -3.76387 | AAAAATATAAACTAA CATCC TGT GGATG GAGAGGAAAGAGTAT CLD_0568 249014 - 249979 + | iron-sulfur cluster-binding protein CLD_0567 250127 - 250828 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein TERM 409 250898 - 250867 - f 100 -14.8 -3.50854 | opp_overlap 250865 250864 250877 ATAACAACTAAGGAA TACTTTAATAGATG TAGT CATCTATTAAAGTA AAATTATGGGAGTGA TERM 410 251336 - 251314 - g 72 -7.8 -3.55622 | GCCAATGCTTTTAAA GTACCTACTA TAG CAGTAGATAC CCATGTTTTTAGAGT TERM 411 251534 - 251524 - g 81 -2.6 -5.67063 | opp_overlap 251524 TGTACTATAAAAAAA TATT GCA AATA TTATAATGAAGAGAT nth 250921 - 251562 + | endonuclease III TERM 412 251624 - 251641 + F 76 -2.7 -5.91981 | opp_overlap 251625, overlap 251625 GTTTTGCTATTAAAG ATATCCA CATG TGGATAA TTTTTTTTGGATTTT TERM 413 251677 - 251708 + F 95 -11.6 -3.62522 | opp_overlap 251670, overlap 251678 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGAATTC TERM 414 251713 - 251752 + F 93 -13.2 -2.90615 | gap 1, opp_overlap 251670 251721, overlap 251717 251718 251720 CCCACTAAAGCTTAT TAACAGAATTCTAAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 415 251717 - 251749 + F 91 -10.7 -3.60151 | opp_overlap 251721, overlap 251713 251718 251720 CTAAAGCTTATTAAC AGAATTCTAAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGGGA TERM 416 251718 - 251748 + F 100 -14.2 -2.75769 | opp_overlap 251721, overlap 251717 251713 251720 TAAAGCTTATTAACA GAATTCTAAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 417 251720 - 251746 + F 85 -11 -2.92144 | opp_overlap 251721, overlap 251718 251717 251713 AAGCTTATTAACAGA ATTCTAAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 418 251745 - 251721 - f 100 -14.5 -3.71552 | opp_overlap 251720 251718 251717 251713 AGCTTATTAACAGAA TTCTAAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 419 251782 - 251834 + F 70 -7.2 -3.69283 | gap 2, overlap 251783 251785 TCGTTATCCAGGGAC GTAGCCGCTCT-TTACTCCCA-CTTT GAA GAAGATGGGAGTATTAGAGCGGGTAG TTATTGGATAAATTA TERM 420 251783 - 251833 + F 82 -10.7 -2.81088 | gap 2, overlap 251782 251785 CGTTATCCAGGGACG TAGCCGCTCT-TTACTCCCA-CTTT GAA GAAGATGGGAGTATTAGAGCGGGTA GTTATTGGATAAATT TERM 421 251785 - 251831 + F 74 -8.9 -2.94872 | gap 2, overlap 251783 251782 TTATCCAGGGACGTA GCCGCTCT-TTACTCCCA-CTTT GAA GAAGATGGGAGTATTAGAGCGGG TAGTTATTGGATAAA CLD_0565 251895 - 253067 + | malic enzyme CLD_0564 254410 - 253181 - | cinA family protein CLD_0563 255419 - 254436 - | hypothetical protein CLD_0562 256563 - 255529 - | glutamyl aminopeptidase family protein TERM 422 255665 - 255651 - G 73 -8.6 -3.2032 | opp_overlap 255632, overlap 255631 255650 CTTTTATATCAAAAC CTGCTT TTA AAGCAG CACTTGCATCAGATC TERM 423 256297 - 256285 - G 76 -7.7 -3.99806 | opp_overlap 256295, overlap 256271 AGAATTCATCATAAA TCCAC CTA GTGGA ACGATGGATAATGTT CLD_0561 256715 - 257851 + | vanW-like family protein TERM 424 259193 - 259171 - g 72 -4.2 -5.0133 | TAGTTCCTTAAAAAA CAAAACATAT AAT ATAAGTTCTG AAATATATGAAACTA CLD_0560 258056 - 259408 + | vanW-like family protein TERM 425 259530 - 259557 + F 79 -8.6 -4.15044 | opp_overlap 259529 TTTAGAAATAAATTG CATACTATAACT AAGG AGTGATAGTATG TTTATTCCCAAAACA TERM 426 260313 - 260301 - g 75 -4.9 -5.17353 | opp_overlap 260301 AGATTTATTAAAAAA CATAA ATA TTATG TTTAAAGGTTTTCCC splB 259555 - 260562 + | spore photoproduct lyase TERM 427 260558 - 260590 + F 100 -13.1 -4.0031 | opp_overlap 260550 260558 260564 260567, overlap 260564 ACATTAACTACATTA TATAGAGAATTAACA TTT TGTTAATTCTTTATA TTCTTTACTAAAGCT TERM 428 260590 - 260558 - f 83 -10.9 -2.71204 | opp_overlap 260558 260564, overlap 260550 260564 260567 ACATTAACTACATTA TATAGAGAATTAACA TTT TGTTAATTCTTTATA TTCTTTACTAAAGCT TERM 429 260584 - 260564 - f 82 -9.9 -3.04537 | opp_overlap 260558 260564, overlap 260558 260567 ACTACATTATATAGA GAATTAACA TTT TGTTAATTC TTTATATTCTTTACT TERM 430 260564 - 260584 + F 100 -9.9 -4.41237 | opp_overlap 260564 260558 260567, overlap 260558 ACTACATTATATAGA GAATTAACA TTT TGTTAATTC TTTATATTCTTTACT CLD_0558 260690 - 261157 + | hypothetical protein TERM 431 261348 - 261334 - g 70 -4.3 -4.91977 | opp_overlap 261343, overlap 261340 TACTAAAATAGAAAA GGAAA ATGTG TTTCC ACAAACTTCTCAAGT TERM 432 261837 - 261854 + G 75 -5.5 -4.70169 | opp_overlap 261838, overlap 261838 GTAAATTAGGTCTAA AGCAAGG TGAA CCTTGCG TTTTATTACATGTGC TERM 433 261853 - 261838 - g 77 -9 -3.6003 | opp_overlap 261837 261838 TAAATTAGGTCTAAA GCAAGG TGAA CCTTGC GTTTTATTACATGTG TERM 434 261838 - 261853 + G 76 -9 -3.41378 | opp_overlap 261838, overlap 261837 TAAATTAGGTCTAAA GCAAGG TGAA CCTTGC GTTTTATTACATGTG CLD_0557 261170 - 262009 + | DegV family protein CLD_0556 262303 - 263406 + | Bmp family lipoprotein TERM 435 263429 - 263482 + F 90 -10.8 -3.44267 | gap 1, opp_overlap 263420 263434 263435 263444 263479, overlap 263420 263435 263444 263479 AGATGATATTAGGAA TATAATG-TTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGCTATATA TATTATAATTTTATT TERM 436 263476 - 263434 - f 95 -10.9 -3.73144 | opp_overlap 263429 263435 263444, overlap 263435 263444 ATATTAGGAATATAA TGTTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGC TATATATATTATAAT TERM 437 263475 - 263435 - f 100 -14.4 -2.83163 | opp_overlap 263435 263429 263444, overlap 263434 263444 TATTAGGAATATAAT GTTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAG CTATATATATTATAA TERM 438 263435 - 263476 + F 100 -14.2 -3.13593 | gap 1, opp_overlap 263434 263435 263444, overlap 263429 263444 TATTAGGAATATAAT G-TTATAAAAGCTAGATGT ACTTA ACATCTAGCTTTTATAAGC TATATATATTATAAT TERM 439 263444 - 263466 + F 100 -10.7 -4.4195 | opp_overlap 263435 263434 263444, overlap 263435 263429 TATAATGTTATAAAA GCTAGATGT ACTTA ACATCTAGC TTTTATAAGCTATAT TERM 440 263466 - 263444 - f 100 -10.7 -4.43859 | opp_overlap 263444 263435 263429, overlap 263435 263434 TATAATGTTATAAAA GCTAGATGT ACTTA ACATCTAGC TTTTATAAGCTATAT CLD_0555 263589 - 265121 + | putative sugar ABC transporter, ATP-binding protein CLD_0554 265123 - 266226 + | putative sugar ABC transporter, permease protein CLD_0553 266219 - 267145 + | putative sugar ABC transporter, permease protein TERM 441 267151 - 267178 + F 100 -10 -5.93252 | opp_overlap 267151, overlap 267152 TAGTAGATAACTTAA TGGAGTTAGAAA GAGA TTTCTAGCTCCG TTTTTTATTTTTGAA TERM 442 267152 - 267177 + F 100 -11.3 -4.13511 | opp_overlap 267151, overlap 267151 AGTAGATAACTTAAT GGAGTTAGAAA GAGA TTTCTAGCTCC GTTTTTTATTTTTGA CLD_0552 267257 - 267982 + | polysaccharide deacetylase family protein TERM 443 268001 - 268029 + F 70 -4 -5.1167 | gap 1, opp_overlap 268001 ATTATAAGTAAAAAA GAGGCCATT-TTA TATT TAATAATGGGCTC TTTTTATATTGGATT TERM 444 268029 - 268001 - f 72 -4 -5.33848 | gap 1, opp_overlap 268001 ATTATAAGTAAAAAA GAGGCCATT-TTA TATT TAATAATGGGCTC TTTTTATATTGGATT TERM 445 268126 - 268106 - f 71 -6.9 -4.15061 | GAATGCATACATAAA GTTATCAAC AAT GTGGATAAC AAAAGAGTGACAACA rpoN 268319 - 269692 + | RNA polymerase sigma-54 factor TERM 446 269695 - 269717 + F 83 -3.5 -5.99154 | opp_overlap 269695 AAAGCGTTTTTAAAA GCATGAT TTATAGATT ATCATGC TTTTTTTATTTAATA TERM 447 269873 - 269851 - f 75 -3.6 -5.58209 | opp_overlap 269851 269852, overlap 269863 TTAAATTTAAAAAAA TTTTTTGAAA AAT TTTAAAAAAA CCCTTTAAAAGTAGG cggR 269980 - 271011 + | central glycolytic genes regulator gap 271089 - 272096 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 448 272104 - 272155 + F 75 -8.8 -3.28924 | opp_overlap 272103 272105 272108, overlap 272105 272107 GACTTTAATATAAAC AGAGTTCTTGGCTTAAGAGGGAGT TTTT ACTTCCTCTAAAGCTTAGAAATCG TTATCCAGGGACGTA TERM 449 272105 - 272154 + F 86 -12.3 -2.57211 | opp_overlap 272103 272105 272108, overlap 272104 272107 ACTTTAATATAAACA GAGTTCTTGGCTTAAGAGGGAGT TTTT ACTTCCTCTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 450 272154 - 272105 - f 73 -7.9 -3.69842 | opp_overlap 272105 272104 272107, overlap 272103 272108 ACTTTAATATAAACA GAGTTCTTGGCTTAAGAGGGAGT TTTT ACTTCCTCTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 451 272107 - 272152 + F 73 -9.1 -2.82623 | opp_overlap 272105 272103 272108, overlap 272105 272104 TTTAATATAAACAGA GTTCTTGGCTTAAGAGGGAGT TTTT ACTTCCTCTAAAGCTTAGAAA TCGTTATCCAGGGAC pgk 272524 - 273720 + | phosphoglycerate kinase tpiA 273782 - 274528 + | triosephosphate isomerase gpmI 274620 - 276149 + | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase eno 276205 - 277500 + | enolase TERM 452 277517 - 277541 + F 100 -11.5 -3.88498 | opp_overlap 277516 277513 277517 AATTTTTAAAACAAG GGACTGCTCAT AGT ATGGGTAGTCC TTTAATCTATAAAAA secG 277724 - 277957 + | preprotein translocase, SecG subunit TERM 453 277983 - 278012 + F 73 -3.1 -5.61596 | gap 1 AAGAGATGATTTAAT TAGCTGTTTAAT GTGAATA ATT-AACAGCTA TTTTTTTATAAAAAT TERM 454 278014 - 278037 + F 77 -7 -4.50193 | ATAATTAACAGCTAT TTTTTTATAA AAAT TTATAAAAAA TTTTAATTAATTGGT rnr 278164 - 280341 + | ribonuclease R TERM 455 280397 - 280353 - f 72 -8.2 -3.29195 | gap 1, opp_overlap 280351 280355 280358 280364 280391, overlap 280351 ATAAGTTAAAAATTA TTTAAGAGAAACTCAG-TTTA AAGT TAATGCTGAGTTTCTCTTATA AGTTTTAAAAGATAT TERM 456 280355 - 280395 + F 90 -13 -2.74784 | gap 1, opp_overlap 280353 280351, overlap 280351 280358 280364 280391 AAGTTAAAAATTATT TAAGAGAAACTCAGT-TTA AAGT TAATGCTGAGTTTCTCTTA TAAGTTTTAAAAGAT TERM 457 280358 - 280392 + F 91 -10.3 -3.52113 | gap 1, opp_overlap 280353 280351, overlap 280355 280351 280364 280391 TTAAAAATTATTTAA GAGAAACTCAGT-TTA AAGT TAATGCTGAGTTTCTC TTATAAGTTTTAAAA TERM 458 281170 - 281160 - g 82 -4 -5.58051 | AAATAAAAAAGAAAA CTAT AAA ATAG CCGCTAAATATGCAC surE 280750 - 281508 + | acid phosphatase SurE smpB 281765 - 282235 + | SsrA-binding protein TERM 459 282325 - 282292 - T 100 -12.8 -5.31275 | opp_overlap 282292 TGCTACGATAAAAAA TACATTTCATAAAC TAATTT GTTTATGAAATGTA TTTTTTTATCTTTGC TERM 460 282292 - 282325 + T 100 -12.8 -5.88197 | opp_overlap 282292 TGCTACGATAAAAAA TACATTTCATAAAC TAATTT GTTTATGAAATGTA TTTTTTTATCTTTGC CLD_0540 283537 - 282374 - | sodium:dicarboxylate symporter family protein TERM 461 283611 - 283596 - H 73 -3.4 -5.59502 | opp_overlap 283591 283596 283607, overlap 283589 GAAAAAACTAAAAAA TTTAAT CAGT ATTAAA TTTTATTTAAGTGTT TERM 462 283692 - 283666 - H 100 -7.3 -6.04324 | opp_overlap 283666 TTAAAAAATAAAAAA CTCCTACCTCC TATAC AGAGGCAGAAG TTATATTCCGCGGTT TERM 463 284032 - 284002 - H 72 -5 -5.09204 | overlap 284021 ATATGTCAATAAAAA TTTAATAAAAAACT CAG AATTTTTTATAAAA AGTGTTAAAAAATAT TERM 464 284996 - 285035 + H 93 -10.2 -4.13648 | opp_overlap 285001 285002, overlap 285001 285002 CCTCGCCTCCACCAT GAAAACCTCGACAATACA GAAA TGTGTTGTCGAGATTTTA TTTATATATAGAATT TERM 465 285030 - 285001 - H 95 -10.1 -4.30576 | opp_overlap 284996 285001 285002, overlap 285002 CCTCCACCATGAAAA CCTCGACAATACA GAAA TGTGTTGTCGAGA TTTTATTTATATATA TERM 466 285001 - 285030 + H 100 -10.1 -5.07523 | opp_overlap 285001 285002, overlap 284996 285002 CCTCCACCATGAAAA CCTCGACAATACA GAAA TGTGTTGTCGAGA TTTTATTTATATATA TERM 467 285029 - 285002 - H 90 -11.4 -3.18024 | opp_overlap 285001 284996 285002, overlap 285001 CTCCACCATGAAAAC CTCGACAATACA GAAA TGTGTTGTCGAG ATTTTATTTATATAT TERM 468 285002 - 285029 + H 100 -13.6 -3.62887 | opp_overlap 285002 285001, overlap 285001 284996 CTCCACCATGAAAAC CTCGACAATACA GAAA TGTGTTGTCGAG ATTTTATTTATATAT CLD_0539 285213 - 285716 + | MepB family protein TERM 469 285871 - 285899 + T 74 -6.1 -4.58724 | TAATCTATATAATAA GACTAGGATATGT TAT AAGTATTCTAGTC TTTTGATTATCTTTA TERM 470 285999 - 285978 - T 86 -8.7 -4.48713 | opp_overlap 285978 285996 TCCACCAATAAGAAA CCCACTACA GATT TGTGGTGGG TTTTACCTATTTTAT TERM 471 285978 - 285999 + T 100 -10.9 -4.36485 | opp_overlap 285978, overlap 285996 TCCACCAATAAGAAA CCCACTACA GATT TGTGGTGGG TTTTACCTATTTTAT CLD_0538 286416 - 286078 - | hypothetical protein TERM 472 287838 - 287822 - g 91 -5.1 -5.68023 | TGATAATGAAAAAAA TCCGAAC ATC GTTTGGA TAGAAAGGCTCAGAC TERM 473 287858 - 287845 - g 79 -8.1 -4.03234 | opp_overlap 287844 TCGTTTGGATAGAAA GGCTC AGAC GAGCC ATGTTAAAATATGTG CLD_0537 286710 - 288041 + | FAD-binding protein TERM 474 288204 - 288184 - f 100 -7.6 -5.5112 | gap 1, opp_overlap 288185, overlap 288185 TCTACCAATAAAAAA CCCACCACA GATT TGTGG-GGG TTTTTCACGTTTGTA TERM 475 288185 - 288204 + F 83 -7.8 -4.72486 | opp_overlap 288184 288185 CTACCAATAAAAAAC CCACCACA GATT TGTGGGGG TTTTTCACGTTTGTA TERM 476 288204 - 288185 - f 75 -7.8 -3.89587 | opp_overlap 288185, overlap 288184 CTACCAATAAAAAAC CCACCACA GATT TGTGGGGG TTTTTCACGTTTGTA TERM 477 288245 - 288233 - f 70 -6.3 -4.21768 | TAAGTAAGTTTAAAA TCACT GAA AGTGA ACCATTTCTATTTCA CLD_0536 288538 - 289314 + | putative methyltransferase CLD_0535 289351 - 290046 + | cyclic nucleotide-binding protein TERM 478 290071 - 290094 + F 78 -6.8 -4.81212 | opp_overlap 290071 TATAGTTAGAAAACT GAGTATATGC GAAA GTATATGCTC TTTTATTGTAATAAG CLD_0534 290198 - 290377 + | oxidoreductase, FAD/FMN-binding CLD_0533 290307 - 290990 + | oxidoreductase, FAD/FMN-binding TERM 479 291493 - 291483 - g 74 -6.8 -4.27617 | overlap 291470 TACATTTGATCAAAA TGCC ACA GGCA GAGATAATTCCAGTG CLD_0532 291175 - 292599 + | putative amino acid decarboxylase TERM 480 292662 - 292676 + F 70 -5 -4.82333 | AACTTAAGATTTTTC TAGTGT TAA GCACTA TTTTTAGATTCTTAT CLD_0531 292787 - 293638 + | flagellin protein TERM 481 293820 - 293799 - f 93 -9.5 -4.66163 | opp_overlap 293799 ACCTCCACCCAAAAA TCCACGACA GAAA TGTCATGGA TTTTTTTAGGTGACG TERM 482 293799 - 293820 + F 91 -7.3 -5.47218 | opp_overlap 293799 ACCTCCACCCAAAAA TCCACGACA GAAA TGTCATGGA TTTTTTTAGGTGACG TERM 483 294642 - 294615 - g 76 -10 -2.82505 | opp_overlap 294618, overlap 294614 AGTGCAGAGGTAAAG TTACCACGGAAA CACT CTTCCGTAGTAA TGTACCTGACACTTT TERM 484 294774 - 294750 - g 70 -3.8 -5.0133 | gap 1, opp_overlap 294763, overlap 294754 TACCTGTGGAAAAAA TCGATTATATG ACTT CATATAAT-GA ATGGCTTAATATACA TERM 485 295552 - 295569 + G 72 -2.7 -5.4505 | opp_overlap 295555, overlap 295555 CTATAGAAATACCTA CAATGAA GAAT TTCATGG TTTTTTCTTCACAAA CLD_0530 293993 - 295612 + | vanadium-dependent haloperoxidase TERM 486 295723 - 295682 - f 79 -8.9 -3.60323 | opp_overlap 295683, overlap 295680 295683 295722 TATGATTAAATAAGA GGTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATACT TTTTTACAGTTTGAA TERM 487 295722 - 295683 - f 88 -12.4 -2.75471 | opp_overlap 295683, overlap 295682 295680 ATGATTAAATAAGAG GTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATAC TTTTTTACAGTTTGA TERM 488 295683 - 295722 + F 100 -12.4 -5.12707 | opp_overlap 295683 295682 295680 ATGATTAAATAAGAG GTATGCTTGAAAGTGAAT TTTA AATCAGTTTCAAGCATAC TTTTTTACAGTTTGA CLD_0529 295896 - 296597 + | regulatory protein VanR TERM 489 297042 - 297018 - g 76 -5.2 -5.09259 | gap 1, overlap 297019 297020 GACTGCAAAAGAAAA TCT-TGAACTT ATAA AAGTTCAAAGA GGAATTCCAGGAACT CLD_0528 296725 - 297645 + | bacitracin transport ATP-binding protein BcrA CLD_0527 297638 - 298393 + | putative transmembrane protein CLD_0526 298481 - 299389 + | two component sensor kinase CLD_0525 299567 - 300223 + | hypothetical protein TERM 490 300320 - 300345 + F 100 -9.1 -5.16206 | AAATACATGATTTAG TACCCTGAAAT AATA ATCTCAGGGTA TTTTTATATTCATTT CLD_0524 300461 - 300697 + | hypothetical protein CLD_0523 300805 - 301776 + | hypothetical protein TERM 491 301868 - 301839 - f 78 -7.9 -4.30576 | opp_overlap 301840, overlap 301840 CCTCTACCATGAAAA CCTCGGCAATACA GAAA TGTATTGCTGAGT TTTTTGTTTTTTATC TERM 492 301867 - 301840 - f 90 -11.4 -3.18024 | opp_overlap 301840, overlap 301839 CTCTACCATGAAAAC CTCGGCAATACA GAAA TGTATTGCTGAG TTTTTTGTTTTTTAT TERM 493 301840 - 301867 + F 100 -13.6 -6.07374 | opp_overlap 301840 301839 CTCTACCATGAAAAC CTCGGCAATACA GAAA TGTATTGCTGAG TTTTTTGTTTTTTAT TERM 494 302638 - 302625 - g 72 -5.3 -4.73094 | opp_overlap 302625 AATAGTAATAGAAAA GTATC GGTA GATAC TATAATGCATAAAAT CLD_0522 301902 - 304538 + | hypothetical protein CLD_0521 305275 - 305496 + | hypothetical protein CLD_0520 305629 - 305856 + | hypothetical protein TERM 495 306061 - 306088 + F 75 -5.6 -5.09259 | opp_overlap 306062 306063, overlap 306062 306063 ACTACCATACATATA ATCCGTACTTGA GAAA TTAAGTACGGGC TTTTATTTTGCAGTA TERM 496 306062 - 306087 + F 79 -9.1 -3.64471 | opp_overlap 306062 306063, overlap 306061 306063 CTACCATACATATAA TCCGTACTTGA GAAA TTAAGTACGGG CTTTTATTTTGCAGT TERM 497 306063 - 306086 + F 82 -10.4 -2.77598 | opp_overlap 306063 306062, overlap 306062 306061 TACCATACATATAAT CCGTACTTGA GAAA TTAAGTACGG GCTTTTATTTTGCAG CLD_0519 306297 - 307406 + | hypothetical protein TERM 498 307543 - 307516 - f 100 -10.1 -4.84274 | opp_overlap 307516 TAAGTATATTAAAAA TAACAGTTAGT CTATGT ACTAACTGTTA TTTTTGCATTTAAAG TERM 499 307516 - 307543 + F 100 -10.1 -4.81249 | opp_overlap 307516 TAAGTATATTAAAAA TAACAGTTAGT CTATGT ACTAACTGTTA TTTTTGCATTTAAAG TERM 500 307610 - 307632 + F 83 -6.3 -5.37593 | opp_overlap 307612, overlap 307612 GTGTACATTTTCTAA TACCCTGAG TTAAT CTTAGGGTG TTTTTTCATTTAGAA TERM 501 307612 - 307630 + F 73 -6.7 -4.31698 | opp_overlap 307612, overlap 307610 GTACATTTTCTAATA CCCTGAG TTAAT CTTAGGG TGTTTTTTCATTTAG TERM 502 308792 - 308779 - g 72 -6.7 -4.08948 | CAACTCCAGAAATAA TGCCA GATT TGGCA AAAGAAGCAGGGGCT CLD_0518 307908 - 309080 + | malic enzyme TERM 503 309084 - 309114 + F 79 -9.8 -2.75769 | opp_overlap 309082 309087, overlap 309083 309086 GCTAGAGTATAAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 504 309111 - 309087 - f 93 -10.1 -3.92485 | opp_overlap 309086 309084 309083, overlap 309082 AGAGTATAAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG kdgT 309293 - 310267 + | 2-keto-3-deoxygluconate transporter TERM 505 310363 - 310373 + F 70 -4 -5.13344 | opp_overlap 310354 310363 ACTATATAATAAGAT TAGA ATA TCTA TTTTTATATTAATCT CLD_0516 310481 - 312103 + | putative sensor histidine kinase CLD_0515 312081 - 312755 + | response regulator TERM 506 312934 - 312953 + F 72 -5.2 -4.93288 | opp_overlap 312933 312934 GATTATGTGAAAAAT TTTTTAAA TTTT TTTAAAAA TTTTGTTTACATATT TERM 507 313226 - 313248 + F 100 -10.7 -5.67967 | opp_overlap 313216 313226 AAATACATTATTTAA TATCCTGAG ATAGC CTCAGGATA TTTTTTTATGCTCGT TERM 508 313248 - 313226 - f 90 -11.4 -3.13722 | opp_overlap 313226, overlap 313216 AAATACATTATTTAA TATCCTGAGA TAG CCTCAGGATA TTTTTTTATGCTCGT TERM 509 313542 - 313552 + G 71 -6.8 -3.9243 | ATGGCGACCTTTATG CCTG TAT CAGG TTCTTTCGAAACTTA lysP 313311 - 314774 + | lysine-specific permease TERM 510 314818 - 314782 - f 100 -18.4 -4.66537 | opp_overlap 314782 314788 TTGTTTAAGATAAAA TATAAAGACTGCTGAT ATTTA ATCAGCAGTCTTTATA TTTATTAGGTGATAG TERM 511 314782 - 314818 + F 100 -18.4 -4.21974 | opp_overlap 314782, overlap 314788 TTGTTTAAGATAAAA TATAAAGACTGCTGAT ATTTA ATCAGCAGTCTTTATA TTTATTAGGTGATAG TERM 512 314788 - 314812 + F 100 -13 -4.46072 | opp_overlap 314782, overlap 314782 AAGATAAAATATAAA GACTGCTGAT ATTTA ATCAGCAGTC TTTATATTTATTAGG TERM 513 315042 - 315066 + F 75 -8.7 -3.24386 | opp_overlap 315047, overlap 315043 315047 TAGTTTGAAATGCTT TTAAAGTTCCA TAA TGGAGCTTTAG TTAATGATGCATTTT TERM 514 315043 - 315065 + F 78 -10 -2.53908 | opp_overlap 315047, overlap 315042 315047 AGTTTGAAATGCTTT TAAAGTTCCA TAA TGGAGCTTTA GTTAATGATGCATTT TERM 515 315154 - 315197 + F 70 -7.2 -3.70553 | opp_overlap 315152 315154, overlap 315141 CGCATATAAAAAATA TATATGTTTATTTATATTAT CATT ACAATATGAATAAATATATA TTGTGTATTAAGTTA TERM 516 315248 - 315283 + F 100 -19.3 -4.76874 | opp_overlap 315248 TGTTTATATAAACAA GATCCCCATAGATGA TATTGT TCATCTATGGGGATC TTTTAATTTTATATT TERM 517 315283 - 315248 - f 100 -19.3 -4.14627 | opp_overlap 315248 TGTTTATATAAACAA GATCCCCATAGATGA TATTGT TCATCTATGGGGATC TTTTAATTTTATATT TERM 518 315720 - 315704 - g 71 -3 -5.23765 | overlap 315713 TAAAGAATATAAAAA CCTTCA AGATA TAAAGG TTATACCTGCTGATA CLD_0513 315318 - 316052 + | metallo-beta-lactamase family protein CLD_0512 316193 - 316831 + | streptogramin A acetyltransferase CLD_0511 316870 - 317382 + | acetyltransferase TERM 519 317672 - 317658 - g 71 -8.6 -2.84566 | overlap 317647 317655 AAGATGGTACAATCA TTCCAC CAT GTGGAA GATGTAGAGAATTTA CLD_0510 317408 - 317785 + | cytidine/deoxycytidylate deaminase family protein CLD_0509 317955 - 318857 + | acetyltransferase CLD_0508 318883 - 319407 + | riboflavin biosynthesis protein RibD domain-containing protein CLD_0507 319470 - 320399 + | DNA polymerase III subunit epsilon CLD_0506 320515 - 321201 + | regulatory protein VanR CLD_0505 321191 - 322309 + | sensor protein VanS (vancomycin resistance protein vanS)(vancomycin histidine protein kinase) TERM 520 322337 - 322390 + F 100 -10.8 -5.02476 | opp_overlap 322340 322344, overlap 322340 ACATATATAAATTAT GAATAAACTTTTGTCTAATAATTG ATAAAG TAATGATTAGACAAAAGTTTATTA TTTTTTGGAGGGTCT TERM 521 322387 - 322340 - f 95 -11.8 -3.36538 | opp_overlap 322337 322340, overlap 322344 TATATAAATTATGAA TAAACTTTTGTCTAATAATT GATAAAGT AATGATTAGACAAAAGTTTA TTATTTTTTGGAGGG TERM 522 322340 - 322387 + F 100 -12.5 -4.61482 | opp_overlap 322340 322344, overlap 322337 TATATAAATTATGAA TAAACTTTTGTCTAATAATTG ATAAAG TAATGATTAGACAAAAGTTTA TTATTTTTTGGAGGG TERM 523 322383 - 322344 - f 80 -8.2 -4.30833 | opp_overlap 322340 322337, overlap 322340 TAAATTATGAATAAA CTTTTGTCTAATAATT GATAAAGT AATGATTAGACAAAAG TTTATTATTTTTTGG CLD_0504 322409 - 323272 + | ABC transporter ATP-binding protein TERM 524 324336 - 324326 - g 76 -5.4 -5.13741 | overlap 324320 TGAAGGCAATAAAAA TGGT TTT ACCA GGTAGCGCGGTATTT CLD_0503 323275 - 324489 + | hypothetical protein TERM 525 324693 - 324670 - g 76 -5.4 -5.05601 | opp_overlap 324664, overlap 324664 324671 TATTACAGAGAAAAA CCTTTCTTTA GCCT TAAAGAAAGT GCGAGATGAAAAATC TERM 526 324692 - 324671 - g 77 -8.9 -3.62276 | opp_overlap 324664, overlap 324664 324670 ATTACAGAGAAAAAC CTTTCTTTA GCCT TAAAGAAAG TGCGAGATGAAAAAT CLD_0502 324497 - 325606 + | hypothetical protein CLD_0501 326594 - 325920 - | isochorismate family protein CLD_0500 327022 - 329352 + | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 527 330090 - 330063 - g 71 -7.8 -3.43636 | opp_overlap 330062 330063 330065, overlap 330066 AAGGAACAGAGAATA GAACAGGCAA TAAGCCAT TTGCCTGCTC CTATATTTGGCAATA CLD_0499 329352 - 330191 + | xanthine dehydrogenase family protein, FAD-binding subunit CLD_0498 330188 - 330661 + | xanthine dehydrogenase family protein, iron-sulfur-binding subunit TERM 528 330749 - 330780 + F 100 -7.3 -6.07374 | opp_overlap 330741 CTGTAAAGGAATGTT TCCCCGCGGATGA CATTGT TCATCTGTGGAGA TTTTTTGTTTTTTGT TERM 529 331047 - 331031 - g 85 -8.1 -4.63527 | CTATGAGGGTAAAAA TCCTAAT AAT ATTAGGA GCAAGTATACTAATT CLD_0497 331018 - 331488 + | hypothetical protein CLD_0496 331499 - 332182 + | putative cytochrome c-type biogenesis protein CcdA CLD_0495 332204 - 332770 + | putative thiol-disulfide oxidoreductase ResA CLD_0494 332795 - 333472 + | DNA-binding response regulator CLD_0493 333609 - 334862 + | sensor histidine kinase TERM 530 336351 - 336370 + T 71 -7.2 -3.95772 | opp_overlap 336351 TTGTTTATTAAAAAA TGGTAATG CGAA CATTGCCA TTTAAATTTGTTATT TERM 531 336370 - 336351 - T 74 -5 -5.14563 | opp_overlap 336351 TTGTTTATTAAAAAA TGGTAATG CGAA CATTGCCA TTTAAATTTGTTATT CLD_0490 336992 - 336381 - | TetR family transcriptional regulator TERM 532 337009 - 337029 + H 76 -8.5 -3.79043 | opp_overlap 337009 337012, overlap 337012 GAAATCTCCTTACAA TAATGAATA TAT TATTCATTA TTTAGCTTACTACTA TERM 533 337029 - 337009 - H 74 -8.5 -3.30635 | opp_overlap 337009 337012, overlap 337012 GAAATCTCCTTACAA TAATGAATA TAT TATTCATTA TTTAGCTTACTACTA TERM 534 338235 - 338222 - g 82 -5.3 -5.37593 | TTTTAAACGAAAAAA CATCA ATAA TGATG AAAAACAAGCAGTTT CLD_0489 337303 - 339264 + | putative beta-lactamase CLD_0488 339338 - 340033 + | regulatory protein VanR CLD_0487 340191 - 341111 + | sensory transduction histidine kinase TERM 535 341291 - 341318 + T 85 -10.8 -3.11291 | gap 1, opp_overlap 341291, overlap 341284 AGAGAAATTTGAGAA GGTCCA-TTTTGT ATA ACAAAAATGGACC TGTTGCAATTGTACA TERM 536 341318 - 341291 - T 90 -10.8 -3.41528 | gap 1, opp_overlap 341291 341284 AGAGAAATTTGAGAA GGTCCA-TTTTGT ATA ACAAAAATGGACC TGTTGCAATTGTACA CLD_0486 342692 - 341370 - | putative oxidoreductase, FAD-binding glvA 343003 - 344328 + | maltose-6'-phosphate glucosidase TERM 537 345181 - 345203 + G 74 -7.8 -3.73402 | opp_overlap 345185, overlap 345197 TGATTCCTACTGGAC TACACCATGT TTT AAATGGTGTA TTTCGTACAACATCT CLD_0484 344496 - 346019 + | PTS system, maltose/glucose-specfic, IIBC component TERM 538 346038 - 346058 + T 78 -6.9 -4.84359 | opp_overlap 346038 ATATAAATATAAAAA TAGCAACTT AAA ATGTTGCTA TTTTTATAAAACTAA TERM 539 346058 - 346038 - T 83 -6.9 -5.26155 | opp_overlap 346038 ATATAAATATAAAAA TAGCAACTT AAA ATGTTGCTA TTTTTATAAAACTAA CLD_0483 346837 - 346070 - | RpiR family transcriptional regulator CLD_0482 347632 - 346853 - | RpiR family transcriptional regulator TERM 540 348078 - 348062 - g 76 -6.6 -4.39889 | opp_overlap 348061 ACAAGTATAGTAAAA TCACCA GCAGA TGGTGA AATTATAGTAGTTAT CLD_0481 347906 - 348388 + | PTS system, glucose family, EIIA component TERM 541 348451 - 348477 + G 100 -11 -5.0916 | opp_overlap 348433 348449 348452, overlap 348433 348452 ATTTTGTTCATAATT ACTCCTCTAAAT TTT ATTTAGAGGAGA TTTTTCTATTCAGAA TERM 542 348452 - 348476 + G 100 -14.5 -3.64773 | opp_overlap 348449 348452, overlap 348451 TTTTGTTCATAATTA CTCCTCTAAAT TTT ATTTAGAGGAG ATTTTTCTATTCAGA TERM 543 348476 - 348452 - g 100 -14.5 -2.82623 | opp_overlap 348452 348451, overlap 348449 TTTTGTTCATAATTA CTCCTCTAAAT TTT ATTTAGAGGAG ATTTTTCTATTCAGA CLD_0480 348396 - 349262 + | DNA-binding response regulator CLD_0479 349272 - 350321 + | sensor histidine kinase TERM 544 350356 - 350383 + F 76 -2.8 -5.9873 | opp_overlap 350358, overlap 350358 TAATAGCCAAAATGA AAGAGAAATC AATACAAA GATTTCTCTA TTTTTTTTATAATAA TERM 545 350358 - 350381 + F 71 -5.4 -4.6341 | opp_overlap 350358, overlap 350356 ATAGCCAAAATGAAA GAGAAATC AATACAAA GATTTCTC TATTTTTTTTATAAT CLD_0478 350441 - 351211 + | peptide ABC transporter ATP-binding protein CLD_0477 351225 - 353195 + | peptide ABC transporter permease TERM 546 353284 - 353319 + F 77 -7.9 -4.15565 | gap 1, opp_overlap 353286 353291, overlap 353291 TTTAATTTTTCAATC TATAAAA-GCTTCGGA CTATA TCTGAAGCTTTTTATA TTTTCAAATAATAAA TERM 547 353291 - 353311 + F 100 -7.6 -5.28983 | opp_overlap 353286 353291, overlap 353284 TTTCAATCTATAAAA GCTTCGGA CTATA TCTGAAGC TTTTTATATTTTCAA TERM 548 353311 - 353291 - f 72 -6.1 -4.4715 | opp_overlap 353291 353284, overlap 353286 TTTCAATCTATAAAA GCTTCGGAC TAT ATCTGAAGC TTTTTATATTTTCAA alr 353434 - 354648 + | alanine racemase TERM 549 354758 - 354789 + F 80 -6.7 -4.91778 | opp_overlap 354758 354763, overlap 354763 CTTTTATAGAAACAT GAAAAGCCATCAT AAATGA GTGATGGCTTTTA TTTATTTTATATTTA TERM 550 354763 - 354784 + F 87 -6.6 -5.28281 | opp_overlap 354763 354758, overlap 354758 ATAGAAACATGAAAA GCCATCAT AAATGA GTGATGGC TTTTATTTATTTTAT TERM 551 354784 - 354763 - f 72 -5.9 -4.5394 | opp_overlap 354758 354763, overlap 354758 ATAGAAACATGAAAA GCCATCA TAAATGAG TGATGGC TTTTATTTATTTTAT CLD_0475 355168 - 356739 + | PTS system, glucose/glucoside family, IIBC component CLD_0474 356798 - 356938 + | hypothetical protein glvA 357055 - 358380 + | maltose-6'-phosphate glucosidase TERM 552 358442 - 358483 + F 100 -12.5 -4.11394 | opp_overlap 358456 358466 ATTGTAAAATTAGTT GAGACTGCCAAAAGTAGAT TAAA ATCTATTTTAGACAGTCTC TTTTGAAAATAAGGT CLD_0472 358518 - 359027 + | PTS system, glucose/glucoside family, IIA component CLD_0471 359310 - 360071 + | SIS domain-containing protein CLD_0470 360290 - 360108 - | hypothetical protein CLD_0469 360559 - 360756 + | cold shock protein TERM 553 360772 - 360800 + F 100 -14.8 -5.05712 | opp_overlap 360768 TTAATAAATATTTTA CCCCTTAAATAG CTAGT CTATTTAAGGGG TTTTTAGTTGTTTAT CLD_0468 361098 - 361652 + | hypothetical protein CLD_0467 361942 - 362055 + | hypothetical protein CLD_0466 362087 - 362518 + | rrf2 family protein CLD_0465 362670 - 363275 + | 2-hydroxychromene-2-carboxylate isomerase family protein CLD_0464 363302 - 363940 + | hypothetical protein TERM 554 364083 - 364104 + F 80 -5.9 -5.1417 | opp_overlap 364082 364083 TTTTTACAGGTAAAG CCTATGAGA ATTT TGTCATAGG TTTTTACTTTTATAA CLD_0463 364378 - 365139 + | putative transcriptional regulator TERM 555 365140 - 365163 + F 100 -10.4 -5.08824 | opp_overlap 365140 AGTAATGTTGAGTAA CGTGTTATCT AAAG AGGTAACACG TTTTTTACATAAGAA TERM 556 365163 - 365140 - f 72 -8.2 -3.16921 | opp_overlap 365140 AGTAATGTTGAGTAA CGTGTTATCT AAAG AGGTAACACG TTTTTTACATAAGAA TERM 557 365196 - 365181 - f 70 -4.8 -4.84311 | opp_overlap 365181 TTTTACATAAGAAAA TCTATA TACA TATAGA TATCTAATTATTATA TERM 558 365390 - 365419 + G 77 -8.1 -3.75153 | gap 1, opp_overlap 365390 GCAAAACTAGCAGAA TACC-TTCCATTTT TAA AGAATGGAATGGTA TTTGGATTAGGAAAA CLD_0462 365258 - 366841 + | PTS system, glucose/maltose-specfic, IIBC component TERM 559 368041 - 368031 - g 74 -6.8 -4.2181 | AAAGAAATAATTAAA GCTG GCA CAGC AAAAGGTGGAGAATT glvA 367107 - 368441 + | maltose-6'-phosphate glucosidase CLD_0460 368454 - 368927 + | PTS system, glucose/maltose-specific, IIA component TERM 560 368973 - 369011 + F 71 -6.7 -4.08216 | opp_overlap 368977, overlap 368975 368977 TAAAATATATTTAGT AAAAGCTCGGAAAGTGG ATATA CCATGTTCCGAGCTATG TTTTAAACAAGATGC TERM 561 368975 - 369009 + F 83 -9.3 -3.63922 | opp_overlap 368977, overlap 368973 368977 AAATATATTTAGTAA AAGCTCGGAAAGTGG ATATA CCATGTTCCGAGCTA TGTTTTAAACAAGAT TERM 562 368977 - 369007 + F 95 -11.9 -3.39908 | opp_overlap 368977, overlap 368975 368973 ATATATTTAGTAAAA GCTCGGAAAGTGG ATATA CCATGTTCCGAGC TATGTTTTAAACAAG TERM 563 369007 - 368977 - f 89 -9.7 -4.3014 | opp_overlap 368977 368975 368973 ATATATTTAGTAAAA GCTCGGAAAGTGG ATATA CCATGTTCCGAGC TATGTTTTAAACAAG TERM 564 370376 - 370353 - g 76 -2.5 -5.50499 | TTATATCTAAAAAAA TAAATCCAG GAGATG CTGTATTTA TAAGATATGAAGGCC ilvD 369065 - 370780 + | dihydroxy-acid dehydratase eda 370832 - 371479 + | 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase CLD_0457 371481 - 372485 + | putative 2-dehydro-3-deoxygluconokinase ade 372686 - 374539 + | adenine deaminase CLD_0455 374941 - 375615 + | DNA-binding response regulator CLD_0454 375612 - 377000 + | sensor histidine kinase CLD_0453 377526 - 378494 + | glycosyl transferase, group 2 family protein CLD_0452 378478 - 378897 + | putative cell wall teichoic acid glycosylation protein GtcA TERM 565 379567 - 379557 - g 76 -5.4 -5.10767 | opp_overlap 379557 GATTTAATATAAAAA TGCT TCA AGCA TATATGATAATACCA TERM 566 380182 - 380194 + G 70 -6.3 -4.09455 | opp_overlap 380182 TAATAGCTTATCAGA CCAAA TTA TTTGG TTATTTCCTCTTGCT CLD_0451 379016 - 381268 + | dolichyl-phosphate-mannose-protein mannosyltransferase family protein TERM 567 381304 - 381335 + F 100 -14.6 -3.31564 | opp_overlap 381300 381309, overlap 381309 TTGGTAAATAATGTT TCAAACCCACCACA GAAA TGTGGTGGGTTTTA TGTATTTAATACTCT TERM 568 381309 - 381330 + F 100 -14.5 -4.74917 | opp_overlap 381300 381309, overlap 381304 AAATAATGTTTCAAA CCCACCACA GAAA TGTGGTGGG TTTTATGTATTTAAT TERM 569 381330 - 381309 - f 100 -14.5 -3.59649 | opp_overlap 381309 381304, overlap 381300 AAATAATGTTTCAAA CCCACCACA GAAA TGTGGTGGG TTTTATGTATTTAAT TERM 570 381526 - 381498 - f 95 -10.6 -4.11447 | opp_overlap 381497 381502, overlap 381495 TAAAAAGAAATATAA TATATGATAATG AATTA CATTATCATATA GTGCGTTGTAATATA TERM 571 381762 - 381748 - g 70 -4.4 -4.98128 | ATAATGAAAAAGAAA TTATAT ATG ATATAA AACCCCAATATGGTA TERM 572 382363 - 382349 - g 72 -2.8 -5.42131 | opp_overlap 382351, overlap 382351 TAATCAGATAAAAAA GATACC AGA GGTATT AATGAAAAATTTATA CLD_0450 381624 - 382661 + | AraC family transcriptional regulator TERM 573 382690 - 382717 + F 71 -5.6 -4.63486 | gap 1, opp_overlap 382690 382691, overlap 382692 TTTTATTTATTTAAA T-TGCCACAGGTG TAG TACCTGTGGCTTA TTTTATTGGAGAAAT TERM 574 382715 - 382691 - f 80 -10 -2.79878 | opp_overlap 382690 382692, overlap 382690 TTTATTTATTTAAAT TGCCACAGGT GTAGT ACCTGTGGCT TATTTTATTGGAGAA TERM 575 382692 - 382714 + F 100 -14.2 -4.43307 | opp_overlap 382691 382690, overlap 382690 TTATTTATTTAAATT GCCACAGGTG TAG TACCTGTGGC TTATTTTATTGGAGA CLD_0449 382926 - 383957 + | iron chelate ABC transporter solute-binding protein CLD_0448 383960 - 385078 + | iron chelate ABC transporter permease protein CLD_0447 385080 - 385850 + | iron chelate ABC transporter ATP-binding protein TERM 576 386357 - 386375 + G 78 -10.4 -2.81487 | overlap 386356 386354 TTTGTTACGTTCCGT TGGAGATT CAA AATCTCCA CTATATTTTTTGATT TERM 577 386691 - 386704 + G 74 -8.1 -3.63569 | GGAACTACTGTGATG GCTGC CTTT GCAGC TTGTTCAAAGATTGA CLD_0446 385884 - 387212 + | MATE efflux family protein TERM 578 387221 - 387247 + T 80 -8.1 -4.26903 | opp_overlap 387222 387224, overlap 387222 AATATAATTATATAG ATAGGAGTGTT ATATG AACACTCCTAC TTTTAGTGCACTCAG TERM 579 387222 - 387246 + T 93 -11.6 -3.1582 | opp_overlap 387222 387224, overlap 387221 ATATAATTATATAGA TAGGAGTGTT ATATG AACACTCCTA CTTTTAGTGCACTCA TERM 580 387246 - 387222 - T 90 -11.6 -3.07506 | opp_overlap 387222 387221, overlap 387224 ATATAATTATATAGA TAGGAGTGTT ATATG AACACTCCTA CTTTTAGTGCACTCA TERM 581 387244 - 387224 - T 82 -9.8 -3.0868 | opp_overlap 387222 387221, overlap 387222 ATAATTATATAGATA GGAGTGTT ATATG AACACTCC TACTTTTAGTGCACT CLD_0445 388481 - 387357 - | AraC family transcriptional regulator TERM 582 388329 - 388340 + g 72 -4.4 -5.05153 | TTCATCTATTTTCAT GGAT TTAA ATCC TTTCTTTTTTAAAAT TERM 583 388809 - 388796 - g 70 -5.3 -4.56729 | opp_overlap 388796 388791, overlap 388791 ATGAAAATATTAAAA GCAAT TTCT ATTGC TTCTATAATCTTTAT CLD_0444 388781 - 389713 + | iron ABC transporter, iron-binding protein CLD_0443 389808 - 390737 + | iron compound ABC transporter, iron compound-binding protein TERM 584 390848 - 390891 + G 95 -11.9 -3.65827 | opp_overlap 390849 390852, overlap 390849 GTGGTTTTGCTAGTA ATTATATCAGCGGCGTCAA TTTCTT TTGGCGCTGCTGATATGAA TTTGACTACAGCTTG TERM 585 390849 - 390890 + G 100 -15.4 -2.79175 | opp_overlap 390849 390852, overlap 390848 TGGTTTTGCTAGTAA TTATATCAGCGGCGTCAA TTTCTT TTGGCGCTGCTGATATGA ATTTGACTACAGCTT TERM 586 390890 - 390849 - g 73 -8.8 -3.14132 | opp_overlap 390849 390848, overlap 390852 TGGTTTTGCTAGTAA TTATATCAGCGGCGTCAA TTTCTT TTGGCGCTGCTGATATGA ATTTGACTACAGCTT TERM 587 390887 - 390852 - g 78 -10.5 -2.77899 | opp_overlap 390849 390848, overlap 390849 TTTTGCTAGTAATTA TATCAGCGGCGTCAA TTTCTT TTGGCGCTGCTGATA TGAATTTGACTACAG TERM 588 391080 - 391092 + G 82 -7.7 -4.37534 | opp_overlap 391080 GACTTATGGGTATAA GTAGC GGT GCTAC TTTTGCTATGGCTTT CLD_0442 390764 - 391792 + | iron compound ABC transporter, permease protein TERM 589 391900 - 391912 + G 77 -5.5 -4.93316 | overlap 391901 GGTAAAATGAATCTC TCTCC TTC GGAGG TTTTTAATGTTCTTA CLD_0441 391789 - 392802 + | iron compound ABC transporter, permease protein CLD_0440 392813 - 393643 + | iron compound ABC transporter, ATP-binding protein CLD_0439 393640 - 395364 + | ABC transporter, ATP-binding/permease protein TERM 590 395375 - 395413 + T 95 -6.3 -6.08342 | opp_overlap 395375 395380 395397 CTTAAAGGTAAAAAA TTAATGACTTAAAGT CTAAAAGCA ACTTTGAGTCGTTAA TTTTTTTATTTATTC CLD_0438 395532 - 395419 - | iron-dependent transcription repressor TERM 591 395660 - 395698 + H 83 -9.2 -3.60627 | opp_overlap 395665, overlap 395665 ATATATCTATATTAT TAAAATTATGCATTTTAT AAT ACAAAATGCATAATTTTC TTTAAAATGAAGTAA TERM 592 395693 - 395665 - H 100 -11.3 -4.33274 | opp_overlap 395660 395665 TCTATATTATTAAAA TTATGCATTTTAT AAT ACAAAATGCATAA TTTTCTTTAAAATGA TERM 593 395665 - 395693 + H 93 -9.1 -4.88918 | opp_overlap 395665, overlap 395660 TCTATATTATTAAAA TTATGCATTTTAT AAT ACAAAATGCATAA TTTTCTTTAAAATGA TERM 594 395931 - 395911 - H 95 -12.7 -3.20723 | opp_overlap 395911 TTGTTATGAACTCAA CACCTCAAT TTG ATTGAGGTG TTTTTTGTTTTACAA TERM 595 395911 - 395931 + H 100 -12.7 -5.79595 | opp_overlap 395911 TTGTTATGAACTCAA CACCTCAAT TTG ATTGAGGTG TTTTTTGTTTTACAA CLD_0437 396049 - 397350 + | xanthine/uracil permease family protein xpt 397373 - 397945 + | xanthine phosphoribosyltransferase CLD_0435 398395 - 399087 + | DNA-binding response regulator CLD_0434 399100 - 400080 + | sensor histidine kinase TERM 596 400103 - 400134 + F 95 -5.4 -6.15536 | gap 1, opp_overlap 400103 TATTAAATATATAAA TAGGATAG-ATAGTT TAA AACTATACTATACTA TTTTTTTTATTAATT TERM 597 400177 - 400152 - f 70 -7.7 -3.39895 | opp_overlap 400155, overlap 400155 TTTTTTATTAATTAA TAAGTGTGACA TACA TGTCATACTTA TGTAAGATTTTGAGA CLD_0433 400257 - 401114 + | putative undecaprenol kinase TERM 598 401353 - 401335 - g 83 -9 -4.13421 | overlap 401322 AATAAAAGATAAGAA TCCTTTAA CAC TTAAAGGA GAGGATTTGGCTTTG CLD_0432 401129 - 401875 + | peptide ABC transporter ATP-binding protein TERM 599 402766 - 402776 + G 78 -6.8 -4.67353 | TTTACATCTATTGGA GCTG TAT CAGC TTTTTGGATCAATAA CLD_0431 401875 - 403737 + | peptide ABC transporter permease CLD_0430 403862 - 404269 + | hypothetical protein CLD_0429 404262 - 404669 + | hypothetical protein TERM 600 404713 - 404750 + F 100 -14.4 -2.72991 | opp_overlap 404710, overlap 404718 TTTTAACAAGAGTGT TTAGAGGGTAATGCAG TAATAT CTGCATTACCCTTTAG TAATTAGGCGTATAC TERM 601 404718 - 404745 + F 100 -14.3 -3.84246 | opp_overlap 404710, overlap 404713 ACAAGAGTGTTTAGA GGGTAATGCAG TAATAT CTGCATTACCC TTTAGTAATTAGGCG CLD_0428 404985 - 405341 + | lrgA family protein TERM 602 405827 - 405843 + G 72 -8.7 -2.89177 | opp_overlap 405825, overlap 405822 ATAACAGGTATAATG GGAGCTG TAA TAGCTCC TATAGTGTGTAAGAT CLD_0427 405344 - 406039 + | lrgB-like family protein TERM 603 406123 - 406155 + F 100 -7.9 -5.30155 | opp_overlap 406123 TAATTTTAATAAGAG GGTGTCTCAAAAT AGATTTA ATTTTGAGATGCC TTTTTTAGTTAATGA TERM 604 406229 - 406217 - f 70 -3.5 -5.29385 | AATTCAATTAAAAAA TTAAT ATT ATTAA AATTTATAGTTAACT TERM 605 406320 - 406290 - f 75 -7.2 -4.32233 | opp_overlap 406292 406295 406301 ACAAAAAGCTCAAAA TATAATATATTTAT TTT AAAAATATATTATA ATTAGGGGGACAATA TERM 606 406764 - 406750 - g 70 -8.6 -2.56601 | overlap 406728 406746 406747 406749 TTGACGAAAAAGCAG CAACAG ATG CTGTTG AAGAAGTTAAAAAAA CLD_0426 406335 - 406985 + | putative lipoprotein TERM 607 407011 - 406978 - f 80 -9.3 -3.1886 | opp_overlap 406983 406987, overlap 406983 406987 406995 AGTTAACTTCAGGAA TAAAATAAATTTTAT AAGA ATAAAATTTATTCTA TACATAATAATACAG TERM 608 407006 - 406983 - f 79 -7 -4.71828 | opp_overlap 406983 406987, overlap 406978 406987 406995 ACTTCAGGAATAAAA TAAATTTTAT AAGA ATAAAATTTA TTCTATACATAATAA TERM 609 407086 - 407120 + F 100 -11.6 -5.22006 | opp_overlap 407090, overlap 407087 407090 AATTATATATTTATA CTAAGGAGATGGAAAA GGA TTTACCATCTCCTTAA TTTTTATTATAATAA TERM 610 407087 - 407119 + F 100 -15.1 -3.72119 | opp_overlap 407090, overlap 407086 407090 ATTATATATTTATAC TAAGGAGATGGAAAA GGA TTTACCATCTCCTTA ATTTTTATTATAATA TERM 611 407090 - 407116 + F 100 -12.4 -3.96481 | opp_overlap 407090, overlap 407087 407086 ATATATTTATACTAA GGAGATGGAAAA GGA TTTACCATCTCC TTAATTTTTATTATA TERM 612 407116 - 407090 - f 93 -12.4 -3.2918 | opp_overlap 407090 407087 407086 ATATATTTATACTAA GGAGATGGAAAA GGA TTTACCATCTCC TTAATTTTTATTATA CLD_0425 407354 - 408253 + | radical SAM domain-containing protein TERM 613 409626 - 409590 - g 77 -9 -3.70037 | opp_overlap 409595 409597 TAAGCATTATGCAAA TATATCTGATGAAATA CATCT TATTTCACCAGTTATA TTAGAACCGATTATA CLD_0424 408388 - 409896 + | hypothetical protein TERM 614 409963 - 409909 - f 84 -8.8 -4.3341 | opp_overlap 409911 409912, overlap 409910 409912 TAAAATTAATATAAA TTACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGCTT TTTATTTTCTATGAA TERM 615 409962 - 409910 - f 93 -12.3 -3.18419 | opp_overlap 409911 409912, overlap 409909 409912 AAAATTAATATAAAT TACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGCT TTTTATTTTCTATGA TERM 616 409911 - 409961 + F 100 -15.8 -5.58522 | opp_overlap 409910 409909 409912, overlap 409912 AAATTAATATAAATT ACATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATGC TTTTTATTTTCTATG TERM 617 409960 - 409912 - f 100 -17.1 -3.12856 | opp_overlap 409911 409912, overlap 409910 409909 AATTAATATAAATTA CATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATG CTTTTTATTTTCTAT TERM 618 409912 - 409960 + F 100 -19.3 -3.92673 | opp_overlap 409912 409910 409909, overlap 409911 AATTAATATAAATTA CATGCCCAAAATCATTATTCTAA AAT TTGAAATAATGGTTTTGGGCATG CTTTTTATTTTCTAT TERM 619 410362 - 410374 + G 71 -4.9 -4.7261 | ATATACAAGTGCTAT TATAG GGG CTATA TTTATTTTAATAGGT CLD_0423 410120 - 410671 + | hypothetical protein CLD_0422 410850 - 411317 + | hypothetical protein TERM 620 411856 - 411844 - g 81 -3.5 -5.52023 | opp_overlap 411844, overlap 411851 ATGATGAATAAAAAA TATAT TAT ATATA CTTTATGTGTATATA CLD_0421 411310 - 411999 + | putative accessory gene regulator protein B CLD_0420 411983 - 412117 + | putative lipoprotein TERM 621 412130 - 412146 + F 100 -10.9 -4.44667 | opp_overlap 412127 TAAAAAAGAGATCGA GATCGGT TTA ACCGATC TTTCTTGTTAGAAAA TERM 622 412351 - 412329 - g 74 -5 -4.91109 | opp_overlap 412329 412332 GTTGGACTATAAAAA TAATATGTCT GCT ATACATATTA TTTCTACTACTATAT TERM 623 413350 - 413330 - g 93 -8.5 -5.16841 | TTACATCAATAAAAA CATTAATAA GTG TTATTAATG CTAAAGATAGATATA TERM 624 413529 - 413519 - g 86 -3.2 -5.99154 | overlap 413521 TATTAAATAAAAAAA TGCC CTT AGCA AAGGAAGAATGGGAA CLD_0419 412189 - 413892 + | GGDEF/HD domain-containing protein TERM 625 414091 - 414055 - f 100 -13.3 -4.0641 | opp_overlap 414055 414056, overlap 414056 TTGTATGTAGATAAA TCCTATTATAAATGCAA AAT TTGCACTTATAATAGGG TTTTTTATTATGTTA TERM 626 414055 - 414091 + F 100 -13.3 -5.64304 | opp_overlap 414055 414056, overlap 414056 TTGTATGTAGATAAA TCCTATTATAAATGCAA AAT TTGCACTTATAATAGGG TTTTTTATTATGTTA TERM 627 414090 - 414056 - f 100 -16.8 -3.03525 | opp_overlap 414055 414056, overlap 414055 TGTATGTAGATAAAT CCTATTATAAATGCAA AAT TTGCACTTATAATAGG GTTTTTTATTATGTT TERM 628 414056 - 414090 + F 100 -14.6 -3.96142 | opp_overlap 414056 414055, overlap 414055 TGTATGTAGATAAAT CCTATTATAAATGCAA AAT TTGCACTTATAATAGG GTTTTTTATTATGTT CLD_0418 414117 - 414632 + | acetyltransferase TERM 629 414726 - 414750 + F 90 -6.5 -5.79595 | opp_overlap 414726 AATAGTTATAAAAAG CCATATGCAAT ATA AATGTATATGG TTTTTTATTTTCAGC CLD_0417 415029 - 415481 + | hypothetical protein CLD_0416 415508 - 417355 + | sensory box histidine kinase TERM 630 417370 - 417420 + F 100 -17.6 -5.47159 | opp_overlap 417363 417375 417379, overlap 417363 417366 417375 GATAATAATTATTTA TAAAATAAATTTTTTAAAATTGTA TAC TACAATTTTAGAGAATTTATTTTA TTTTTATTTATTAAA TERM 631 417375 - 417415 + F 100 -13.1 -5.48028 | opp_overlap 417363 417375 417379, overlap 417363 417366 417370 TAATTATTTATAAAA TAAATTTTTTAAAATTGTA TAC TACAATTTTAGAGAATTTA TTTTATTTTTATTTA TERM 632 417415 - 417375 - f 86 -8.7 -4.44915 | opp_overlap 417363 417366 417370 417375, overlap 417363 417379 TAATTATTTATAAAA TAAATTTTTTAAAATTGTA TAC TACAATTTTAGAGAATTTA TTTTATTTTTATTTA TERM 633 417411 - 417379 - f 70 -5.1 -4.7878 | opp_overlap 417375 417370, overlap 417375 TATTTATAAAATAAA TTTTTTAAAATTGTA TAC TACAATTTTAGAGAA TTTATTTTATTTTTA CLD_0415 417584 - 418051 + | hypothetical protein CLD_0414 418038 - 418667 + | accessory gene regulator B CLD_0413 418702 - 418836 + | hypothetical protein TERM 634 418844 - 418834 - f 70 -2.6 -5.54894 | opp_overlap 418843 AAGTCATTAAAAAAA TAAA ACC TTTA AATAGTGTATAAGGG TERM 635 418843 - 418884 + F 100 -11.1 -4.23529 | opp_overlap 418834 418847, overlap 418847 418879 AAAAAATAAAACCTT TAAATAGTGTATAAGGGGG GATA CCTGCTTATACACTATATA TTTATATATTAATAT TERM 636 418847 - 418880 + F 95 -11.9 -3.42088 | opp_overlap 418847, overlap 418843 418879 AATAAAACCTTTAAA TAGTGTATAAGGGGG GATA CCTGCTTATACACTA TATATTTATATATTA TERM 637 418880 - 418847 - f 84 -9.7 -3.6834 | opp_overlap 418843 418847 418879 AATAAAACCTTTAAA TAGTGTATAAGGGGG GATA CCTGCTTATACACTA TATATTTATATATTA TERM 638 419171 - 419188 + G 74 -2.1 -5.61881 | TATTTATGCAAAGAA TAGAAAA CATG TTTTTTA TTTTTATTTTTACAG TERM 639 420294 - 420282 - g 70 -3.5 -5.04601 | opp_overlap 420282 TGCAGAAAGCAAAAA TATAA ATA TTATA TTTGATACAGATGTT CLD_0412 418918 - 420771 + | sensory box histidine kinase TERM 640 420890 - 420925 + F 74 -5.1 -5.09521 | gap 1, opp_overlap 420890 420893 AAATGGAAGTTTAAA TAGGCTATATT-TATT AAAAA AATATAATATAGCTTA TTTTTGATTTATTAA CLD_0411 421003 - 421869 + | PP-loop family protein TERM 641 421903 - 421950 + T 74 -6.1 -4.61868 | gap 2, opp_overlap 421903, overlap 421898 AAATAATTAAAAAAA GATTTCCAAATATT--TGTAAAT ACAA ATTTACTTTAATATTTGGAAATC TTTTATCTATAAATA TERM 642 421950 - 421903 - T 87 -6.1 -5.73672 | gap 2, opp_overlap 421898 421903 AAATAATTAAAAAAA GATTTCCAAATATT--TGTAAAT ACAA ATTTACTTTAATATTTGGAAATC TTTTATCTATAAATA CLD_0410 422540 - 421995 - | DNA-binding protein TERM 643 422457 - 422446 - G 71 -3 -5.24531 | ACCTGTGATAAAAAA CTTA TAGA TAAG CCTGTTTTTTCACTA TERM 644 422640 - 422603 - H 100 -10.9 -3.9461 | opp_overlap 422602 422605 422611 422615 TTCTTTCAATAATAA TAGCATAATAACCTTGA TAAT TCAAGATTATTATCCTA ATATTAGAAAAATAT TERM 645 422745 - 422732 - H 80 -2.5 -6.04953 | overlap 422741 ATATAAACAAAAAAA TAATA AATT TATTA CAGTAAACAATAAAA CLD_0409 422894 - 424300 + | amino acid permease family protein TERM 646 424316 - 424334 + F 74 -6 -4.58395 | overlap 424333 AAATATGAATTAAGA GGCTATCT AAA AGGTAGTC TTTTTCACAAATAGA TERM 647 424402 - 424389 - f 76 -2.5 -5.9218 | TAGAGAATAAAAAAA TAAAT ATAA ATTTA GGAGTGGATTTTTAT CLD_0408 424416 - 425498 + | M24 family metallopeptidase TERM 648 425576 - 425524 - f 93 -10 -3.91032 | gap 1, opp_overlap 425525 425526 425528, overlap 425526 TAAGTATCCTATAAA CAGACTTCTTGGCTTTAGAGGGAGC TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGGGACATA TERM 649 425525 - 425576 + F 80 -9.5 -3.28924 | opp_overlap 425524 425526, overlap 425526 425528 AAGTATCCTATAAAC AGACTTCTTGGCTTTAGAGGGAG CTTTTA CTCCCACTAAAGCTTAGAAATCG TTATCCAGGGACATA TERM 650 425526 - 425575 + F 89 -13 -2.57211 | opp_overlap 425524 425526, overlap 425525 425528 AGTATCCTATAAACA GACTTCTTGGCTTTAGAGGGAG CTTTTA CTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 651 425575 - 425526 - f 100 -13.7 -3.54 | opp_overlap 425526 425525 425528, overlap 425524 AGTATCCTATAAACA GACTTCTTGGCTTTAGAGGGAGC TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACAT TERM 652 425528 - 425573 + F 80 -9.8 -2.82623 | opp_overlap 425526 425524, overlap 425526 425525 TATCCTATAAACAGA CTTCTTGGCTTTAGAGGGAG CTTTTA CTCCCACTAAAGCTTAGAAA TCGTTATCCAGGGAC TERM 653 425720 - 425676 - f 95 -8.4 -5.1356 | gap 1, opp_overlap 425676 CTTTAGTAATAAAAA TAACTATGTAAAAAGTATATT ATAA AATATATTTTTT-CATAGTTA TTTTTTTATCCACAA TERM 654 425676 - 425720 + F 100 -10.6 -5.60993 | gap 1, opp_overlap 425676 CTTTAGTAATAAAAA TAACTATGTAAAAAGTATATT ATAA AATATATTTTTT-CATAGTTA TTTTTTTATCCACAA TERM 655 427973 - 427991 + G 70 -8.2 -3.09834 | opp_overlap 427988 AAAGGGATTAACTGC TGCATCAG GAA TTGATGCA TTAACTCATGCAGTA adhE 426036 - 428624 + | aldehyde-alcohol dehydrogenase TERM 656 428722 - 428767 + F 100 -21.7 -5.28778 | opp_overlap 428722 CATTTATACAAAAAA TAATGCTGTTTCAAAATAGAG TTAA CTTTATTTTGAAACAGCATTA TTTTTTATAAATGAT TERM 657 428767 - 428722 - f 100 -19.5 -5.38047 | opp_overlap 428722 CATTTATACAAAAAA TAATGCTGTTTCAAAATAGAG TTAA CTTTATTTTGAAACAGCATTA TTTTTTATAAATGAT CLD_0406 428943 - 429230 + | hypothetical protein CLD_0405 429293 - 429883 + | hypothetical protein CLD_0404 429920 - 430090 + | hypothetical protein TERM 658 430142 - 430196 + T 100 -23.3 -5.54079 | opp_overlap 430142 430147 TATAAAAAGCATTAA TAAAATACAGCTTGATGTCCCAAGG CTTTA CATTGGGACATCAAGCTGTATTTTC TTTTTTACTTTTTCA TERM 659 430196 - 430142 - T 100 -24 -3.43187 | opp_overlap 430142, overlap 430147 TATAAAAAGCATTAA TAAAATACAGCTTGATGTCCCAAGGC TTT ACATTGGGACATCAAGCTGTATTTTC TTTTTTACTTTTTCA TERM 660 430191 - 430147 - T 100 -23.9 -4.76123 | opp_overlap 430142, overlap 430142 AAAGCATTAATAAAA TACAGCTTGATGTCCCAAGGC TTT ACATTGGGACATCAAGCTGTA TTTTCTTTTTTACTT CLD_0403 430648 - 430169 - | hypothetical protein TERM 661 430483 - 430495 + g 83 -3.4 -5.68039 | opp_overlap 430483 TTCCTATAAACTTAA GATG ACCTA CATC TTTTTTTGTAAGTTT TERM 662 430876 - 430838 - R 100 -14.9 -4.87291 | opp_overlap 430836 430847, overlap 430840 GAGTGTAATTAAAAA TCCACCTAATTTCTCAC AAGAG GTAAGAAATTAGGTGAA AACTTATAAATCTAT TERM 663 430874 - 430840 - R 100 -15.3 -2.70268 | opp_overlap 430836 430847, overlap 430838 GTGTAATTAAAAATC CACCTAATTTCTCAC AAGAG GTAAGAAATTAGGTG AAAACTTATAAATCT CLD_0402 432001 - 430991 - | hypothetical protein TERM 664 431772 - 431757 - G 72 -9 -2.9462 | overlap 431754 431759 GAGGCACCTAAACCA GAGGTG ATAT CACCTC CCAGATTGGTCCAAG CLD_0401 432105 - 432632 + | PAP2 family protein TERM 665 432665 - 432702 + F 100 -13.1 -4.08064 | opp_overlap 432655 432671, overlap 432671 GATAATGAGGATGTC TCAAAATAGCCTTAATT TTAA AATTAAGGCTATTTTTA TTTTGAGACACCCTT TERM 666 432671 - 432696 + F 100 -12.1 -5.45802 | opp_overlap 432671, overlap 432665 GAGGATGTCTCAAAA TAGCCTTAATT TTAA AATTAAGGCTA TTTTTATTTTGAGAC TERM 667 432696 - 432671 - f 100 -12.1 -4.10161 | opp_overlap 432665 432671 GAGGATGTCTCAAAA TAGCCTTAATT TTAA AATTAAGGCTA TTTTTATTTTGAGAC CLD_0400 433028 - 433840 + | polysaccharide deacetylase family protein CLD_0399 433948 - 434634 + | DNA-binding response regulator CLD_0398 434644 - 436038 + | sensor histidine kinase TERM 668 436456 - 436440 - g 76 -3.8 -5.38951 | overlap 436444 436446 AATTTAGATAAAAAA GAAATA GAAGT TATTTC AACTTCTTCGGATAA TERM 669 436577 - 436557 - g 90 -4.8 -5.7946 | overlap 436559 436564 GTTTTAACAAAAAAA TCCAATAG CTCAT CTATTGAA CCTAAGCACAATACA CLD_0397 436101 - 437591 + | putative lipoprotein CLD_0396 437635 - 438201 + | hypothetical protein TERM 670 438810 - 438848 + G 85 -8.4 -4.40003 | opp_overlap 438807, overlap 438804 438812 CTTCAAAATTTATAG TCCCTGTAATTTTAGTTA TAC TAACTACAATTATAGGAA TTTATGTTTATAAAA TERM 671 438812 - 438846 + G 82 -11 -2.53244 | opp_overlap 438807, overlap 438804 438810 TCAAAATTTATAGTC CCTGTAATTTTAGTTA TAC TAACTACAATTATAGG AATTTATGTTTATAA CLD_0395 438227 - 438901 + | DedA family protein CLD_0394 441962 - 439284 - | multisensor diguanylate cyclase/phophodiesterase TERM 672 440118 - 440130 + g 88 -7.7 -4.91873 | opp_overlap 440117 TTTGGCCGCATACAT TGCAG CAT CTGCA TTTTTCATTAATGTA TERM 673 440492 - 440506 + g 93 -5.8 -5.66989 | TATTTATAGTTTTAT TTATAG TTT CTATAA TTTTTTTCCTATTTG TERM 674 441783 - 441797 + g 75 -5.8 -4.74653 | opp_overlap 441781 441785 TTTATTTAAGTTATA GATATT TTG AATATC TTTATTTATTAATTT TERM 675 442042 - 442015 - R 70 -3.8 -5.22794 | gap 1, opp_overlap 442004 442016 442018 442019 442020, overlap 442004 442018 442020 442022 AGAATTATTAAAAAA TAATATATATCTA TTA TA-ATATATATTA GCTTATAATAGGTAT TERM 676 442074 - 442022 - R 79 -9.1 -3.52788 | gap 1, opp_overlap 442018 442016 442020 442019, overlap 442015 442018 442020 TTAAAAAATAATATA TATCTATTATAATATATATTAGCT TATAAT AGGTA-TATATATTATAATAGATA AAATTTTAAAATAAA TERM 677 442129 - 442093 - R 90 -6.8 -5.79595 | opp_overlap 442093 442097 442126 TTTTAAAATAAAAAA TAAAGTTGCCTATA AAAATTTAG TAAAGGCAACTTTA TATTAAAATATTATT CLD_0393 443349 - 442162 - | hypothetical protein TERM 678 443978 - 444019 + G 95 -6.1 -5.78622 | CGAGAGGGGATATAC TTAAAATAGCTAATGTTTT TAAT AAGACAATGGCTATTTCAA TTTTTTTTAAAATGA CLD_0392 443602 - 444942 + | MATE efflux family protein CLD_0391 445135 - 445701 + | HD domain-containing protein TERM 679 445832 - 445802 - f 100 -7.6 -5.77734 | opp_overlap 445802 AAATAAAAACAAAAA GGAAACCCTAACAT ATA ATAAAAGGGTTTCC TTTAGTTTTTATAGA CLD_0390 446009 - 447277 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 680 447408 - 447362 - T 100 -12.8 -4.04319 | gap 1, opp_overlap 447361 447360 447368 447404, overlap 447342 TTATAAAGGTATAAA TTAACACCTATAAGTT-ATAG GAAATA CTACAAACTTATAGGTGTTAA AATTTAACTATATTT CLD_0389 448734 - 447412 - | aminotransferase, class V TERM 681 449047 - 449072 + H 82 -9.3 -3.34222 | opp_overlap 449046 449045 449053, overlap 449053 449068 TTATAAAAATAGAGT TTATAATAAGT AAAT ACTTATTATAA TTATAAAATAATAAT CLD_0388 449196 - 450206 + | hypothetical protein TERM 682 450232 - 450202 - f 100 -14.2 -3.68261 | opp_overlap 450204 450207, overlap 450204 450207 450212 TTATAACAGGGCAAA TATAAGGAAAGTGC GAC GCACTTTCCTTATT TATATTAAGAAAGAG TERM 683 450230 - 450204 - f 100 -16.8 -3.41704 | opp_overlap 450204 450207, overlap 450202 450207 450212 ATAACAGGGCAAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTATATTAAGAAAG TERM 684 450204 - 450230 + F 100 -16.8 -4.1891 | opp_overlap 450204 450202 450207 450212, overlap 450207 ATAACAGGGCAAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTATATTAAGAAAG TERM 685 450207 - 450227 + F 100 -14.1 -4.21773 | opp_overlap 450204 450202 450207 450212, overlap 450204 ACAGGGCAAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTATATTAAGA TERM 686 450227 - 450207 - f 100 -14.1 -3.83347 | opp_overlap 450207 450204, overlap 450204 450202 450212 ACAGGGCAAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTATATTAAGA TERM 687 450222 - 450212 - f 71 -6.8 -4.11501 | opp_overlap 450207 450204, overlap 450207 450204 450202 GCAAATATAAGGAAA GTGC GAC GCAC TTTCCTTATTTATAT CLD_0387 450337 - 451011 + | hypothetical protein CLD_0386 450957 - 451655 + | DNA-binding response regulator CLD_0385 451645 - 453159 + | sensor histidine kinase TERM 688 453165 - 453198 + F 95 -11.9 -3.484 | opp_overlap 453162 453166 453172, overlap 453166 453172 GGATGAATAAAATTT ATTAAAACCTGGTGC AATT GCATCAGGTTTTAAG TTATAATATAATGAA TERM 689 453197 - 453166 - f 93 -13.2 -2.85912 | opp_overlap 453165 453166 453172, overlap 453162 453172 GATGAATAAAATTTA TTAAAACCTGGTGC AATT GCATCAGGTTTTAA GTTATAATATAATGA TERM 690 453166 - 453197 + F 100 -15.4 -2.68719 | opp_overlap 453166 453162 453172, overlap 453165 453172 GATGAATAAAATTTA TTAAAACCTGGTGC AATT GCATCAGGTTTTAA GTTATAATATAATGA TERM 691 453172 - 453191 + F 95 -10 -4.33151 | opp_overlap 453166 453162 453172, overlap 453166 453165 TAAAATTTATTAAAA CCTGGTGC AATT GCATCAGG TTTTAAGTTATAATA TERM 692 453191 - 453172 - f 78 -7.8 -4.34771 | opp_overlap 453172 453166 453165, overlap 453166 453162 TAAAATTTATTAAAA CCTGGTGC AATT GCATCAGG TTTTAAGTTATAATA CLD_0384 453267 - 454682 + | sodium:solute symporter family protein TERM 693 455413 - 455397 - f 79 -3.8 -5.66229 | opp_overlap 455397 AGGAACAAGAAAAAA TTACAA AAAAA TTGTAA TTTTCGAACAAATAA TERM 694 455950 - 455937 - g 70 -3.8 -5.055 | TTAACTTTTAAAAAA GGTG TACATC CACC ACATGGAAAATACCT TERM 695 456185 - 456158 - g 83 -7 -5.05782 | AGGTACTGTAAAAAA TCTTGCTCCAGT ATTA ACTGCAGCAGGA ACAAAGGTAATGGCA CLD_0383 455913 - 457232 + | electron transport complex, RnfABCDGE type, C subunit CLD_0382 457255 - 458187 + | electron transport complex, RnfABCDGE type, D subunit CLD_0381 458187 - 458858 + | electron transport complex, RnfABCDGE type, G subunit CLD_0380 458869 - 459471 + | electron transport complex, RnfABCDGE type, E subunit TERM 696 459820 - 459802 - g 75 -6 -4.73388 | AATGGTTATTAAAAA GAAAAGTC CAG GACTTTAC AAAGCTCTAGGAATA CLD_0379 459524 - 460102 + | electron transport complex, RnfABCDGE type, A subunit CLD_0378 460116 - 460949 + | electron transport complex, RnfABCDGE type, B subunit TERM 697 461005 - 461032 + F 100 -13 -4.92783 | opp_overlap 461005 GAGTATATAAAAAAA GAGTTAAGTAAA ATTT TTTACTTAACTC TTTTTGTACTCCATT TERM 698 461032 - 461005 - f 100 -13 -5.74122 | opp_overlap 461005 GAGTATATAAAAAAA GAGTTAAGTAAA ATTT TTTACTTAACTC TTTTTGTACTCCATT TERM 699 462049 - 462069 + G 72 -6.9 -4.11216 | opp_overlap 462048 462052, overlap 462052 AAACAGATTTCAAAC TAATCTAGC CGT GCTAGAATA TTTTAAAGGTAAAGG TERM 700 462066 - 462052 - g 76 -8.6 -3.53745 | opp_overlap 462049 462052, overlap 462048 CAGATTTCAAACTAA TCTAGC CGT GCTAGA ATATTTTAAAGGTAA TERM 701 462052 - 462066 + G 71 -8.6 -2.79004 | opp_overlap 462052 462048, overlap 462049 CAGATTTCAAACTAA TCTAGC CGT GCTAGA ATATTTTAAAGGTAA CLD_0377 461297 - 462385 + | amidase domain-containing protein TERM 702 462420 - 462457 + T 100 -13.1 -3.79747 | opp_overlap 462425, overlap 462425 AGTATAGAGTATAGA AAAAAGAGTTAAGTAAA TAAA TTTACTTAACTCTTTTA TTTAATGATCAATAA TERM 703 462452 - 462425 - T 100 -13 -5.40625 | opp_overlap 462420 462425 AGAGTATAGAAAAAA GAGTTAAGTAAA TAAA TTTACTTAACTC TTTTATTTAATGATC TERM 704 462425 - 462452 + T 100 -13 -4.95484 | opp_overlap 462425, overlap 462420 AGAGTATAGAAAAAA GAGTTAAGTAAA TAAA TTTACTTAACTC TTTTATTTAATGATC TERM 705 462536 - 462480 - T 88 -11.9 -2.90373 | opp_overlap 462487 462528, overlap 462477 462484 462502 ATCAATAATTAATTA GCAATGCCCAATGCTCAATTAATAATT ATT AATTAACAATTGAGCATCGATCATTGA CAATTGATCATTTTT TERM 706 462532 - 462484 - T 93 -11.3 -3.30956 | opp_overlap 462487 462528, overlap 462477 462480 462502 ATAATTAATTAGCAA TGCCCAATGCTCAATTAATAATT ATT AATTAACAATTGAGCATCGATCA TTGACAATTGATCAT CLD_0376 463080 - 462544 - | hypothetical protein CLD_0375 463490 - 463098 - | hypothetical protein TERM 707 463537 - 463547 + r 76 -2.6 -5.9362 | opp_overlap 463537 AAAAATTTATTAAAT TTAA AAA TTAA TTTTTTTATATTTTA CLD_0374 464638 - 463604 - | apbE family protein TERM 708 463834 - 463845 + g 70 -5.8 -4.35116 | TAAGGCCTTTTTCTG CAGG ATAA CCTG TTTTAGTATCAAATA TERM 709 465131 - 465120 - H 73 -4.4 -5.13521 | overlap 465109 AAATGACTTAAAAAA TCCT GTTT AGGA AAAGATATCACATTC TERM 710 466280 - 466254 - g 76 -6.6 -4.40184 | TTAATGAAATAGAAA CTGCTGTTAACC CAG AATTATCAGCAG CAGAAAAAGCTGTTA TERM 711 466423 - 466406 - g 73 -3.5 -5.28481 | gap 1, overlap 466407 466409 466410 GATGCAACTAAAAAA TC-AGCTT TCG AAGCTAGA ATAGCAGCTAAAGAC TERM 712 467970 - 467930 - g 71 -5.5 -4.42237 | overlap 467921 467931 AATAAAGTAAAAGAA CTACCATCAAAAGCAACAA TTA CTGTAGCTTCAGATGATAA AACTGTTACAATAGA CLD_0373 465248 - 469354 + | putative cell surface protein TERM 713 469464 - 469430 - f 79 -3.7 -5.75822 | gap 1, opp_overlap 469430 469434 469436, overlap 469434 TAGAAATTAAAAAAA TATAGGGAAGGGTAGA TTAT TCTATCCTTCTC-ATA TTTAAGATATATGAT TERM 714 469430 - 469464 + F 76 -8.1 -3.65693 | gap 1, opp_overlap 469430 469434, overlap 469434 469436 TAGAAATTAAAAAAA TATAGGGAAGGGTAGA TTAT TCTATCCTTCTC-ATA TTTAAGATATATGAT TERM 715 469461 - 469434 - f 70 -7 -3.80651 | opp_overlap 469430 469434 469436, overlap 469430 AATTAAAAAAATATA GGGAAGGGTAGA TTAT TCTATCCTTCTC ATATTTAAGATATAT TERM 716 469434 - 469461 + F 83 -11.4 -2.63853 | opp_overlap 469434 469430, overlap 469430 469436 AATTAAAAAAATATA GGGAAGGGTAGA TTAT TCTATCCTTCTC ATATTTAAGATATAT TERM 717 469436 - 469459 + F 82 -10.4 -2.85565 | opp_overlap 469434 469430, overlap 469434 469430 TTAAAAAAATATAGG GAAGGGTAGA TTAT TCTATCCTTC TCATATTTAAGATAT TERM 718 469580 - 469623 + F 100 -15 -3.94393 | opp_overlap 469586, overlap 469586 GATAAAATAGTCATA TCAAAAGACTATTGAATGGA TTAT TCTATTCAATAGTCTTTTTA TCTTTGTTTGTATTC TERM 719 469586 - 469617 + F 100 -14 -5.30448 | opp_overlap 469586, overlap 469580 ATAGTCATATCAAAA GACTATTGAATGGA TTAT TCTATTCAATAGTC TTTTTATCTTTGTTT TERM 720 469617 - 469586 - f 100 -11.8 -4.36262 | opp_overlap 469586 469580 ATAGTCATATCAAAA GACTATTGAATGGA TTAT TCTATTCAATAGTC TTTTTATCTTTGTTT TERM 721 470169 - 470159 - g 78 -4 -5.48825 | GATCAGCTAAAAAAA TTAG ATA CTAA AGAGGTAATAATAGT CLD_0372 469844 - 471913 + | amidase domain-containing protein TERM 722 471968 - 471915 - f 93 -9.3 -4.48869 | opp_overlap 471921 471926, overlap 471926 TAAAAAGAAGATAAA TCATATCAAAAGACTATTAAATGAA ATAA TTCATTTAATAGTCTTTTATTTTCA TGTAATTAATATTTA TERM 723 471921 - 471962 + F 100 -14.9 -4.39287 | opp_overlap 471915 471926, overlap 471926 GAAGATAAATCATAT CAAAAGACTATTAAATGAA ATAA TTCATTTAATAGTCTTTTA TTTTCATGTAATTAA TERM 724 471957 - 471926 - f 100 -14.8 -4.40894 | opp_overlap 471921 471926, overlap 471915 TAAATCATATCAAAA GACTATTAAATGAA ATAA TTCATTTAATAGTC TTTTATTTTCATGTA TERM 725 471926 - 471957 + F 100 -14.8 -5.16132 | opp_overlap 471926 471915, overlap 471921 TAAATCATATCAAAA GACTATTAAATGAA ATAA TTCATTTAATAGTC TTTTATTTTCATGTA CLD_0371 472006 - 472272 + | hypothetical protein TERM 726 474819 - 474801 - g 83 -9 -4.17513 | overlap 474796 474816 AATAAAAACATTAAA TTAGCTTA CTA TAAGCTAA TAGAAGCCATTAAAA CLD_0370 472548 - 477452 + | putative cell surface protein TERM 727 477514 - 477495 - T 100 -12.2 -5.54894 | opp_overlap 477495 AATGTAGTAAAAAAA GTGGGAAG TAAA CTTCCCAC TTTTTTGCTTAATTT TERM 728 477495 - 477514 + T 100 -12.2 -5.33921 | opp_overlap 477495 AATGTAGTAAAAAAA GTGGGAAG TAAA CTTCCCAC TTTTTTGCTTAATTT CLD_0369 477957 - 477523 - | hypothetical protein TERM 729 478333 - 478299 - H 77 -6.9 -4.60255 | gap 1, opp_overlap 478298 478299 478301 ATAATTGCTGAAAAA TATTTTAATAAAGGTA TAAA TA-CTTTATTAAAATA CTTCTATATTATGAT TERM 730 478634 - 478650 + G 74 -6.5 -4.4078 | opp_overlap 478633 AATAGATATGAAACG GCTGCTA AGT TAGCTGC TTTTAATTGGACAAA CLD_0368 478499 - 481906 + | putative cell wall-binding protease TERM 731 481957 - 481989 + T 100 -12.1 -4.53607 | opp_overlap 481960, overlap 481959 481960 ACTAAGGGGAATACT AAAGGGCAGATACAA AAA TTGTATCTGCCCATG TTTTATAATAATTTT TERM 732 481959 - 481987 + T 100 -14.7 -3.85857 | opp_overlap 481960, overlap 481957 481960 TAAGGGGAATACTAA AGGGCAGATACAA AAA TTGTATCTGCCCA TGTTTTATAATAATT TERM 733 481986 - 481960 - T 100 -18.2 -3.9344 | opp_overlap 481959 481957 481960 AAGGGGAATACTAAA GGGCAGATACAA AAA TTGTATCTGCCC ATGTTTTATAATAAT TERM 734 481960 - 481986 + T 100 -18.2 -2.9043 | opp_overlap 481960, overlap 481959 481957 AAGGGGAATACTAAA GGGCAGATACAA AAA TTGTATCTGCCC ATGTTTTATAATAAT CLD_0367 482981 - 481992 - | acyltransferase family protein TERM 735 482726 - 482714 - G 70 -3.5 -5.0916 | CTTCTAATAGAAAAA TATAT ACA ATATA CCATGCAAAGTAGTC TERM 736 482736 - 482750 + g 82 -4.3 -5.60864 | opp_overlap 482736 AATATACCATGCAAA GTAGT CTGGA ACTAC TTTTTTTAGTCTATG TERM 737 484170 - 484154 - g 73 -9.5 -2.55019 | overlap 484153 484151 484157 484162 AATGGTAAAAACTAT CAAGTAG ATG CTACTTG GAATGATCCAGTACC CLD_0366 483461 - 484972 + | hypothetical protein TERM 738 485007 - 485047 + F 93 -7.1 -5.69793 | opp_overlap 485007 AAATAAAATAATATA GATATAGGATTTATAGTTT ATA AGACTATTTATTCTATATC TTTTTTATTTAATAT TERM 739 485128 - 485140 + F 70 -3.4 -5.28983 | ACTCTTTTTATTCAT CCTA TCAGC TAGG TTTTTATATTTTAAA CLD_0365 485368 - 486279 + | phosphate ABC transporter phosphate-binding protein TERM 740 486507 - 486524 + G 72 -4.3 -5.17576 | TTTTGGGATAAAGTT TTTTATT ACAT AATAAAA TTTTTTACATTCCTA TERM 741 487090 - 487080 - g 76 -5.4 -5.08824 | CCTGCATCTAAAAAA GCTA TAT TAGC CTCTGTAATTTTAGC CLD_0364 486474 - 487346 + | phosphate ABC transporter permease TERM 742 487419 - 487435 + G 72 -5.1 -4.81734 | TTTTATTGTTACTTT GGTACTT TTT AAGCACC TTTTTAGTAGTGTTT CLD_0363 487382 - 488212 + | phosphate ABC transporter permease CLD_0362 488214 - 488960 + | phosphate ABC transporter ATP-binding protein TERM 743 489307 - 489295 - g 70 -6.3 -4.14541 | overlap 489289 CAGTAAGTATAGAAA CCTTT CCT AAAGG TAATGCTACTTTTTA TERM 744 489520 - 489498 - g 100 -7.8 -5.67967 | AGCAGTATAAAAAAA GTGTTTTCTA TGA TTGAAAACAC CAATAGAATAGTAGC CLD_0361 489081 - 489551 + | hypothetical protein TERM 745 489702 - 489749 + F 86 -9 -4.46233 | gap 2, opp_overlap 489697 489702 489707, overlap 489707 AATAATATAACTCAA TAAAAGCTATGAAATTAGTAGG ATAAAA CCTA--AATTTCATAGCTTTTA TTTATTTAAAATTAA TERM 746 489749 - 489702 - f 77 -9 -3.30821 | gap 2, opp_overlap 489702 489707, overlap 489697 489707 AATAATATAACTCAA TAAAAGCTATGAAATTAGTAGG ATAAAA CCTA--AATTTCATAGCTTTTA TTTATTTAAAATTAA TERM 747 489707 - 489744 + F 73 -4.5 -5.18866 | gap 2, opp_overlap 489702 489697 489707, overlap 489702 TATAACTCAATAAAA GCTATGAAATTAGTAGG ATAAAA CCTA--AATTTCATAGC TTTTATTTATTTAAA TERM 748 489765 - 489781 + F 75 -6.7 -4.49939 | opp_overlap 489765 TTTATTTAAAATTAA TTTTACA AAC TGTAAAA TTTTATAAATTATAT TERM 749 490522 - 490535 + G 76 -3.9 -5.38549 | TTTCCTTCAGTATTA GAAAA TTTA TTTTC TTTTTCTTATTTAAA TERM 750 490911 - 490895 - g 75 -4.5 -5.04265 | opp_overlap 490895 AAAAAATAGGAAAAA TACTAAT TTT ATCAGTA ATTATGGCAGTAGTT CLD_0360 490156 - 491607 + | amino acid permease family protein TERM 751 491680 - 491640 - T 100 -15.7 -5.63012 | opp_overlap 491645 491650 491679, overlap 491645 AAAAACAAATAAAAA CGTAATAAAAGGAAAGTGC TAT GCACTTTCCTTTTATTGTG GAATTATTCTATTGA TERM 752 491675 - 491645 - T 100 -18.6 -3.54768 | opp_overlap 491645 491650, overlap 491640 CAAATAAAAACGTAA TAAAAGGAAAGTGC TAT GCACTTTCCTTTTA TTGTGGAATTATTCT TERM 753 491645 - 491675 + T 100 -18.6 -3.4015 | opp_overlap 491645 491640, overlap 491650 CAAATAAAAACGTAA TAAAAGGAAAGTGC TAT GCACTTTCCTTTTA TTGTGGAATTATTCT TERM 754 491650 - 491670 + T 100 -14.1 -4.78839 | opp_overlap 491645 491640, overlap 491645 AAAAACGTAATAAAA GGAAAGTGC TAT GCACTTTCC TTTTATTGTGGAATT TERM 755 491681 - 491702 + T 79 -8.9 -3.76952 | overlap 491679 491684 TTTCCTTTTATTGTG GAATTATTC TATT GAATAATTC TTTAAATTCAGTACC CLD_0359 492227 - 491673 - | putative lipoprotein TERM 756 492053 - 492066 + g 71 -2.3 -5.35815 | TCTCATTTGTTGCAT TGCCG TTTG CTGCA TTTTTGTTTGCTGTA CLD_0358 492416 - 493240 + | hypothetical protein TERM 757 493254 - 493284 + F 100 -5.6 -6.23545 | opp_overlap 493245 493253 493254 493270 AACATAGACAAAAAG GTGTCTCAAAAT TAAATCT ATTTTTAGACAC TTTTTTTTATTTAAG CLD_0357 493318 - 494013 + | hypothetical protein CLD_0356 494100 - 494438 + | single-strand nucleic acid-binding domain-containing protein TERM 758 494474 - 494464 - f 76 -2.6 -5.93252 | opp_overlap 494469, overlap 494469 TTGAAAAATAAAAAA TTAA GTT TTAA TAAAAATTTATCCGT CLD_0355 494692 - 495243 + | hypothetical protein TERM 759 495588 - 495558 - g 81 -2.7 -5.79595 | gap 1, opp_overlap 495569, overlap 495559 GTTTAAAAGAAAAAA GCATACTC-ACACT ATAC AGTGTAAAGTATGT CATAAAGAGGTGCAG TERM 760 495587 - 495559 - g 70 -6.2 -4.0613 | gap 1, opp_overlap 495569, overlap 495558 TTTAAAAGAAAAAAG CATACTC-ACACT ATAC AGTGTAAAGTATG TCATAAAGAGGTGCA CLD_0353 495307 - 495741 + | FUR family transcriptional regulator CLD_0354 496085 - 495738 - | hypothetical protein CLD_0352 496356 - 497414 + | HD domain-containing protein TERM 761 497433 - 497470 + F 100 -14.5 -4.10566 | opp_overlap 497436 497442, overlap 497436 TTGTTAATATGAGTA TAAGCACAACATAAAAT TTAA ATTATATGTTGTGCTTA TTTGTATAATAATAT TERM 762 497436 - 497467 + F 100 -11.8 -4.16814 | opp_overlap 497436 497442, overlap 497433 TTAATATGAGTATAA GCACAACATAAAAT TTAA ATTATATGTTGTGC TTATTTGTATAATAA TERM 763 497467 - 497436 - f 95 -11.8 -3.47307 | opp_overlap 497436 497433, overlap 497442 TTAATATGAGTATAA GCACAACATAAAAT TTAA ATTATATGTTGTGC TTATTTGTATAATAA CLD_0351 497551 - 498576 + | putative membrane associated peptidase TERM 764 498681 - 498733 + T 100 -14.4 -4.1891 | gap 1, opp_overlap 498681 498682 498684, overlap 498682 498685 TACGTCTCTGGATAA C-GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTCTG TTTATATTCAAAAGA TERM 765 498732 - 498681 - T 100 -16.8 -3.28924 | opp_overlap 498681 498682 498685, overlap 498682 498684 TACGTCTCTGGATAA CGATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTCT GTTTATATTCAAAAG TERM 766 498731 - 498682 - T 100 -20.3 -2.57211 | opp_overlap 498682 498681 498685, overlap 498681 498684 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTC TGTTTATATTCAAAA TERM 767 498682 - 498731 + T 100 -18.1 -3.6944 | opp_overlap 498681 498682 498684, overlap 498681 498685 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAACTC TGTTTATATTCAAAA TERM 768 498729 - 498684 - T 100 -17.1 -2.82623 | opp_overlap 498682 498681 498685, overlap 498682 498681 GTCTCTGGATAACGA TTTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAAC TCTGTTTATATTCAA TERM 769 498685 - 498728 + T 100 -18.4 -2.64681 | opp_overlap 498684 498682 498681, overlap 498682 498681 TCTCTGGATAACGAT TTCTAAGCTTTAGAGGGAGT AAAA ACTCCCTCTAAAGCCGAGAA CTCTGTTTATATTCA CLD_0350 500980 - 498926 - | methyl-accepting chemotaxis protein TERM 770 499806 - 499822 + g 74 -8.1 -3.63707 | opp_overlap 499812 GCAGACAATTCTTCG GATATAG ATA CTATATC TTTAAGGCTTATATT TERM 771 501510 - 501542 + r 90 -11.3 -3.20878 | ACAGGACGTTTACTT AGCTCTGTTGCCACA GGA TGTGGCATTAGAGCG TTAGCTTAAATATTA CLD_0349 503589 - 501853 - | putative cell division protease FtsH-like protein TERM 772 503534 - 503501 - G 72 -8.3 -3.28712 | opp_overlap 503509, overlap 503509 TTTGTTTTTTTAGAA CTATAGAAGTTAAGA GAAA TCATAACTGCTATAG ATAAAAAGGCAGTTA TERM 773 503557 - 503572 + g 71 -3.4 -5.17786 | overlap 503551 GGCAGTTAATAAAGG TAAAAT AATA ATTTTA TTTTTAATTTTATTC TERM 774 504299 - 504283 - gH 79 -8.1 -3.95126 | overlap 504286 GAAAAAGAAGTTAAA GAAGAAA AAT TTTCTTC AAATAAAAAGTATAA TERM 775 504372 - 504360 - gH 81 -3.5 -5.55769 | opp_overlap 504360 TCTCACAAGAAAAAA TTTAA AAA TTAAA TTACCTAATAAGTAT CLD_0348 503809 - 504864 + | hypothetical protein rnhA 504839 - 505288 + | ribonuclease HI TERM 776 505442 - 505420 - g 76 -9.2 -3.09492 | GCTGGAATGTTAATA GTACCTCAAT TAG ATAGAGGTAC TAGAAGAAGAATAAA CLD_0346 505351 - 505527 + | hypothetical protein TERM 777 505564 - 505520 - f 100 -14 -3.40566 | gap 1, opp_overlap 505531, overlap 505531 ATATGAGAGGGATAA TG-AGATAAAAAGATTTGGGG AAAG CCCCAAATCTTTTTATATACA ATAAATACAAAAATG TERM 778 505552 - 505531 - f 100 -13.1 -5.05079 | opp_overlap 505531, overlap 505520 ATAATGAGATAAAAA GATTTGGGG AAAG CCCCAAATC TTTTTATATACAATA TERM 779 505531 - 505552 + F 100 -13.1 -4.9792 | opp_overlap 505531 505520 ATAATGAGATAAAAA GATTTGGGG AAAG CCCCAAATC TTTTTATATACAATA CLD_0345 505708 - 507012 + | TPR repeat-containing DNA binding protein CLD_0344 507044 - 508297 + | TPR repeat-containing protein CLD_0343 508950 - 509555 + | DJ-1/PfpI family protein TERM 780 509815 - 509830 + G 76 -7.6 -3.87994 | opp_overlap 509814 TTTTGGCAGAATTAT GAAGGA ACAC TCCTTC TTTCTACAAATAGGT TERM 781 510015 - 509999 - g 77 -7.3 -4.3586 | opp_overlap 509998 509999 CCATTTACATTAAAA GCTGAAA TGG CTTCAGC ATATTTTACAGGAGT CLD_0342 509813 - 510676 + | hypothetical protein TERM 782 510691 - 510718 + F 88 -8.6 -4.80453 | AAAATTAATGTTATA TAAGCGTCGATA AAAA TATTGATGCTTA TTTATTTTGTGATAA TERM 783 512323 - 512307 - g 81 -3.8 -5.54338 | overlap 512301 512309 CAATGAAAAGAAAAA TATTTC AATTA GAAATA GAAAAGGAAGCATTG clpB 511040 - 513640 + | clpB protein TERM 784 514150 - 514182 + T 72 -8.4 -3.20878 | ATAGGACGTTTACTT AGCTCTGTTGCCAC AGGAC GTGGCATTAGAGCG TTAGCTTAAATATTA CLD_0340 515031 - 514303 - | CobB/CobQ family glutamine amidotransferase CLD_0339 516450 - 515089 - | UDP-N-acetylmuramyl tripeptide synthetase-like protein TERM 785 516301 - 516285 - G 78 -9.5 -3.28924 | opp_overlap 516274 516279 516285 516281 516280 TAGTTCCTGTTACAA GGATTAC TTT GTAATCC TTAGCTATTGTTTTT TERM 786 516285 - 516301 + g 78 -9.5 -3.29121 | opp_overlap 516285, overlap 516274 516279 516281 516280 TAGTTCCTGTTACAA GGATTAC TTT GTAATCC TTAGCTATTGTTTTT TERM 787 517403 - 517419 + G 87 -8.1 -4.83169 | opp_overlap 517388 517387 517402 517403 TGCAATTGAAAAATT GCAATAA GAC TTATTGC TTTTTGTCAGAGGCT manA 516715 - 517695 + | mannose-6-phosphate isomerase, class I TERM 788 517916 - 517952 + F 91 -10.5 -3.52896 | opp_overlap 517915 517914 517918 517942, overlap 517914 TCTTTTTTAAGAAGG TATTCACAATATCTTTT ATT GAAAAATATTGTGAATA TTATATAAATAATAA TERM 789 517950 - 517918 - f 79 -10.2 -2.6563 | opp_overlap 517914 517916, overlap 517915 517914 517942 TTTTTTAAGAAGGTA TTCACAATATCTTT TATTG AAAAATATTGTGAA TATTATATAAATAAT CLD_0337 518044 - 519159 + | putative lipoprotein CLD_0336 519267 - 520121 + | putative undecaprenol kinase TERM 790 520142 - 520182 + T 100 -18.7 -5.02502 | opp_overlap 520146 TAAAGAGCGTTGTTA TATAGGACTATTAGCAG TGTAAAT CTGCTAATAGTCCTATA TTTTTATATGATATC TERM 791 520178 - 520146 - T 100 -15.1 -2.87344 | opp_overlap 520142 GAGCGTTGTTATATA GGACTATTAGCAG TGTAAAT CTGCTAATAGTCC TATATTTTTATATGA TERM 792 522020 - 522001 - T 75 -9.2 -2.65808 | opp_overlap 522004 522007, overlap 521998 522013 AGTCGTAACAAGGTA GCCGTAGG AGAA CCTGCGGC TGGATCACCTCCTTT TERM 793 522147 - 522127 - T 95 -9.9 -4.36586 | opp_overlap 522125 522127, overlap 522118 522124 ATATAATTAAAATAA GTTAAGATA AAT TATCTTAAC TATTAGTTATGGAAT TERM 794 522127 - 522147 + T 85 -9.9 -3.29593 | opp_overlap 522118 522127 522124, overlap 522125 ATATAATTAAAATAA GTTAAGATA AAT TATCTTAAC TATTAGTTATGGAAT TERM 795 522218 - 522202 - T 72 -8.7 -2.62616 | overlap 522217 TCAGTTGGGAGAGCA CCTGCCT TGC AAGCAGG GGGTCAGGAGTTCGA TERM 796 522551 - 522536 - T 72 -9 -2.69489 | opp_overlap 522536 522534 522546, overlap 522533 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 797 522536 - 522551 + T 75 -9 -3.23572 | opp_overlap 522533 522536, overlap 522534 522546 GAATGAGGAAACTCA CATGGG TAAC CCCATG TATTATGCACTGAAT TERM 798 522695 - 522678 - T 76 -8.5 -3.695 | opp_overlap 522677 GGGAAAGAGCCCAAA CCAGAAA CTTG TTTCTGG GGTTGTGGATAGATC TERM 799 522861 - 522846 - T 81 -10.4 -2.71011 | ACCTTGTGGGAAGCA GGGAGG ACCA CCTCCC AAGGCTAAATACTAC TERM 800 522935 - 522924 - T 75 -7.2 -4.2354 | GAAAGGTGAAAAGAA CCCC GGAA GGGG AGTGAAATAGAACCT TERM 801 523757 - 523741 - T 71 -6.5 -4.08767 | CTTATTGGCCGAAAA CCTAAGG TTT CCTGAGG AAGGTTCGTCCGCTC TERM 802 525671 - 525639 - T 95 -10.7 -4.23281 | opp_overlap 525641, overlap 525641 AAGATGTAATATAAA TAGGATGTTGGTATA TTT TATTCCAACATCCTT ATTTGCATACAAAAG TERM 803 525669 - 525641 - T 100 -13.3 -3.70511 | opp_overlap 525641, overlap 525639 GATGTAATATAAATA GGATGTTGGTATA TTT TATTCCAACATCC TTATTTGCATACAAA TERM 804 525641 - 525669 + T 100 -13.3 -3.96216 | opp_overlap 525641 525639 GATGTAATATAAATA GGATGTTGGTATA TTT TATTCCAACATCC TTATTTGCATACAAA CLD_0328 526841 - 525978 - | metallo-beta-lactamase family protein CLD_0327 526978 - 527700 + | putative 1-acyl-sn-glycerol-3-phosphate acyltransferase TERM 805 527704 - 527742 + F 100 -12 -6.62203 | opp_overlap 527703 527704 527706 GCAAGAAATTAAGAG GAGAGTGTCTCAAAAT AGATTTA ATTTTGAGGCATTCTC TTTTTTTTTTATTAT CLD_0326 528446 - 529807 + | HMGL-related enzyme CLD_0325 529951 - 531876 + | aconitase/isopropylmalate dehydratase family protein CLD_0324 531912 - 532910 + | isocitrate/isopropylmalate family dehydrogenase TERM 806 532989 - 533022 + F 100 -9.9 -5.93809 | opp_overlap 532989 533010 TTAAATTATATTTAA GTTTTTCTTATGATT TTAA GATTATAAGAAAAAC TTTTTTTTATAAAAA CLD_0323 533158 - 533943 + | polar amino acid ABC transporter ATP-binding protein TERM 807 534351 - 534373 + F 90 -6.3 -5.95286 | CAAGTACGTCTATAT GCCTTGAGT GTAAA GCTTAAGGC TTTTTTGTTTTTGAT CLD_0322 534467 - 536233 + | Na+/H+ antiporter family protein TERM 808 536262 - 536236 - T 100 -16.8 -4.43501 | opp_overlap 536236 536239 536244 AATGGATGCATAAAA TAAGGAAAGTGC TTA GCACTTTCCTTA TTGTTCTTCTCTAGG TERM 809 536236 - 536262 + T 100 -16.8 -4.06864 | opp_overlap 536236, overlap 536239 536244 AATGGATGCATAAAA TAAGGAAAGTGC TTA GCACTTTCCTTA TTGTTCTTCTCTAGG TERM 810 536239 - 536259 + T 100 -14.1 -4.14147 | opp_overlap 536236, overlap 536236 536244 GGATGCATAAAATAA GGAAAGTGC TTA GCACTTTCC TTATTGTTCTTCTCT TERM 811 536244 - 536254 + T 71 -6.8 -4.15849 | opp_overlap 536236, overlap 536239 536236 CATAAAATAAGGAAA GTGC TTA GCAC TTTCCTTATTGTTCT CLD_0321 536475 - 536260 - | hypothetical protein panD 536946 - 536563 - | aspartate 1-decarboxylase panC 538101 - 537256 - | pantoate--beta-alanine ligase TERM 812 537521 - 537538 + g 77 -7.1 -4.24711 | GCAGATTTTCTTTCC TGCTTAT TTAA ATAAGCA TTTCTTGAGCTTTTA TERM 813 538003 - 537989 - G 70 -8.6 -2.50074 | overlap 537988 TTTTTTATAAGAGAG GCATGA CCT TCATGC AAATATCCCATAGTA panB 538983 - 538156 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase TERM 814 538921 - 538931 + g 72 -4 -5.1361 | ATAATCATAGGCAGT TAAC ATA GTTA TTTTTTCACCTTTGT TERM 815 539131 - 539106 - H 75 -9.3 -2.59981 | opp_overlap 539108, overlap 539105 539108 GACAATTAGATGAAG TACTTTAAATA AGGA TATTTAAAGTA TATGAATATAAAAAT TERM 816 539775 - 539827 + H 100 -15.8 -3.86524 | gap 1, opp_overlap 539775 539776 539778 539804 539824, overlap 539776 539779 TACGTCCCTGGATAA C-GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCTG TTTATACAGACATAT TERM 817 539826 - 539775 - H 100 -18.2 -3.28924 | opp_overlap 539775 539776 539779, overlap 539776 539778 539804 539824 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCT GTTTATACAGACATA TERM 818 539825 - 539776 - H 100 -21.7 -2.57211 | opp_overlap 539776 539775 539779, overlap 539775 539778 539804 539824 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATACAGACAT TERM 819 539776 - 539825 + H 100 -19.5 -3.52113 | opp_overlap 539775 539776 539778 539804 539824, overlap 539775 539779 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATACAGACAT TERM 820 539823 - 539778 - H 100 -18.5 -2.82623 | opp_overlap 539776 539775 539779, overlap 539776 539775 539804 GTCCCTGGATAACGA TTTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAAC TCTGTTTATACAGAC TERM 821 539779 - 539822 + H 100 -19.8 -2.59797 | opp_overlap 539778 539776 539775 539804, overlap 539776 539775 TCCCTGGATAACGAT TTCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCCAAGAA CTCTGTTTATACAGA TERM 822 543029 - 543002 - g 76 -8.7 -3.42241 | opp_overlap 543001 543007 543019, overlap 543007 AAGAGATATGGATAA TATAATATCTG GTATAT CAGATATTATA CCTGTTATGGTTAAA addB 539889 - 543341 + | ATP-dependent nuclease subunit B CLD_0316 543941 - 543555 - | hypothetical protein CLD_0315 544248 - 544898 + | TPR repeat-containing protein CLD_0314 544901 - 545587 + | hypothetical protein TERM 823 545602 - 545642 + T 79 -4.1 -5.72622 | overlap 545608 545624 545640 ATAACTTAATGTACA TTATGACCTACTAATGG CTAATTA CCAATGGTAGGTTTTAA TTTTTTATTTATAGA TERM 824 545608 - 545636 + T 75 -5.3 -4.9251 | overlap 545602 545624 TAATGTACATTATGA CCTACTAATGG CTAATTA CCAATGGTAGG TTTTAATTTTTTATT TERM 825 545640 - 545680 + T 79 -8.8 -3.58522 | opp_overlap 545667 545678, overlap 545602 545643 545678 ACCAATGGTAGGTTT TAATTTTTTATTTATAGA AGATA TATATAAATAAAAAATTA TTTAAGAATAATACT TERM 826 545691 - 545678 - T 73 -2.5 -5.76237 | opp_overlap 545640 545678 545681, overlap 545667 545681 TATATAAATAAAAAA TTATT TAAG AATAA TACTGTTTTTTCTTA TERM 827 545823 - 545848 + T 82 -9.1 -4.03413 | TCTAAGTTAAGGTTT GTATTTCTGCA TAAA TGCAGGGATAC TTTCTATAAAAAAAT CLD_0313 546422 - 545814 - | TetR family transcriptional regulator hypB 546780 - 547337 + | hydrogenase accessory protein HypB CLD_0311 547573 - 547971 + | pyridine nucleotide-disulphide oxidoreductase family protein CLD_0310 548011 - 548142 + | pyridine nucleotide-disulphide oxidoreductase family protein CLD_0309 548204 - 549190 + | hypothetical protein TERM 828 549206 - 549244 + T 95 -12.8 -3.63073 | opp_overlap 549216, overlap 549216 549240 AATAAAATCTATTTA CAGTAAAAAATGTAGGTT AAG AACCTACATTTTTTATTC TTATTGAGGAATATA TERM 829 549216 - 549234 + T 100 -10.4 -5.70522 | opp_overlap 549216, overlap 549206 ATTTACAGTAAAAAA TGTAGGTT AAG AACCTACA TTTTTTATTCTTATT TERM 830 549234 - 549216 - T 100 -10.4 -5.22312 | opp_overlap 549216 549206 ATTTACAGTAAAAAA TGTAGGTT AAG AACCTACA TTTTTTATTCTTATT CLD_0308 549852 - 549364 - | hypothetical protein TERM 831 550664 - 550654 - g 72 -4 -5.08169 | ATAGAGTTGAAAAAA CTTA TTT TAAG ATGCAAGAAGCATGG CLD_0307 550269 - 551060 + | hypothetical protein addA 551218 - 555057 + | recombination helicase AddA TERM 832 555847 - 555830 - g 75 -4.9 -5.093 | overlap 555835 GTTAAAACAATAAAA GAAAATC AAAA GACTTTC GAAACTATGATATAC TERM 833 555849 - 555835 - g 73 -3.6 -5.33124 | overlap 555830 AACAATAAAAGAAAA TCAAAA GAC TTTCGA AACTATGATATACAA TERM 834 556142 - 556128 - g 74 -2.2 -5.50925 | overlap 556132 AATTAATAGAAAAAA TTACTT ATC AAATAA CCAATATAACAGAAG CLD_0305 555197 - 556888 + | methyl-accepting chemotaxis protein pepT 556965 - 558191 + | peptidase T TERM 835 558470 - 558444 - T 71 -6.8 -4.05033 | opp_overlap 558445 558452, overlap 558445 TTTATTTTATATAAA TTTAGATATAAT CTA ATTATATCTAAG CAGTACCTTCTTTTT TERM 836 558469 - 558445 - T 85 -10.3 -3.02698 | opp_overlap 558445 558452, overlap 558444 TTATTTTATATAAAT TTAGATATAAT CTA ATTATATCTAA GCAGTACCTTCTTTT CLD_0303 559398 - 558466 - | phospholipase family protein TERM 837 558602 - 558624 + g 100 -12.2 -3.01309 | opp_overlap 558606, overlap 558606 558618 TCAAAGTCTGTAGAG CTAATTCCTA AGG TAGGAATTAG TATAGTTCTATCTAT TERM 838 559630 - 559598 - H 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLD_0302 560196 - 560912 + | metallo-beta-lactamase family protein TERM 839 561032 - 561048 + F 74 -8.1 -3.46586 | opp_overlap 561032 561038, overlap 561031 561030 AGTAAGCCGCTAACA CAAAATC AAA GATTTTG GTTTTCTGTTTAAAG TERM 840 561048 - 561032 - f 71 -8.1 -3.04501 | opp_overlap 561032 561031 561030, overlap 561038 AGTAAGCCGCTAACA CAAAATC AAA GATTTTG GTTTTCTGTTTAAAG CLD_0301 561118 - 561576 + | glyoxalase CLD_0300 561716 - 561931 + | hypothetical protein TERM 841 561953 - 561981 + F 93 -7.6 -5.19328 | opp_overlap 561953 ATAACATCAATTAAA GTACTTTTAGAG TGCGT CTTTAAAGGTAC TTTTTATTATACAAT CLD_0299 562119 - 562808 + | hypothetical protein CLD_0298 562827 - 563024 + | hypothetical protein TERM 842 563038 - 563050 + T 72 -4.9 -5.06103 | opp_overlap 563033 AGCGCAATGATAGAT TTTCT ATG AGAAA TTTTTTAAAGATTCT TERM 843 563202 - 563151 - T 100 -22.2 -4.4959 | opp_overlap 563154 563158, overlap 563158 TTTAAGGAATTAAAA CAAGAAATACTTTTCCTCAATAGA TATA TCTATTGAAGAAAAGTATTTCTTA TGCAAAATCATCATT TERM 844 563154 - 563199 + T 100 -19.5 -3.30441 | opp_overlap 563151 563158, overlap 563158 AAGGAATTAAAACAA GAAATACTTTTCCTCAATAGA TATA TCTATTGAAGAAAAGTATTTC TTATGCAAAATCATC TERM 845 563195 - 563158 - T 100 -16.7 -4.71463 | opp_overlap 563154 563158, overlap 563151 AATTAAAACAAGAAA TACTTTTCCTCAATAGA TATA TCTATTGAAGAAAAGTA TTTCTTATGCAAAAT TERM 846 563158 - 563195 + T 100 -14.5 -4.30987 | opp_overlap 563158 563151, overlap 563154 AATTAAAACAAGAAA TACTTTTCCTCAATAGA TATA TCTATTGAAGAAAAGTA TTTCTTATGCAAAAT CLD_0297 563870 - 563235 - | His/Glu/Gln/Arg/opine ABC transporter permease CLD_0296 564686 - 563883 - | polar amino acid ABC transporter amino acid-binding protein TERM 847 564595 - 564605 + g 72 -5.4 -4.70353 | TTTATATCCTTAAGG GAAG TAT CTTC TTTTGATTTGTTATC TERM 848 564937 - 564925 - g 79 -7.7 -4.33576 | GAAGAAATATACAAA GCCAT ATT ATGGC CCAAATAATTATTTT CLD_0295 564908 - 565636 + | hypothetical protein TERM 849 565738 - 565777 + T 100 -14.6 -2.90615 | gap 1, opp_overlap 565741 565743, overlap 565742 565743 565745 565745 CCCACTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 850 565774 - 565741 - T 93 -11.9 -3.20747 | gap 1, opp_overlap 565738 565742 565743 565745 565745, overlap 565743 ACTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGAGA TERM 851 565742 - 565774 + T 95 -12.1 -3.60151 | opp_overlap 565741 565743, overlap 565738 565743 565745 565745 CTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGAGA TERM 852 565743 - 565773 + T 100 -15.6 -2.75769 | opp_overlap 565741 565743, overlap 565742 565738 565745 565745 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 853 565773 - 565743 - T 100 -15.6 -3.16288 | opp_overlap 565743 565742 565738 565745 565745, overlap 565741 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 854 565745 - 565771 + T 89 -12.4 -2.92144 | opp_overlap 565743 565741, overlap 565743 565742 565738 565745 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 855 565899 - 565938 + T 100 -9.7 -5.38054 | opp_overlap 565899 GGTGAATATAAAAAA GTATAAGATAAAATTTT ATTATA AAAATTATATCTTATAC TTTTTATTTATAAAA TERM 856 565938 - 565899 - T 100 -9.7 -5.47159 | opp_overlap 565899 GGTGAATATAAAAAA GTATAAGATAAAATTTT ATTATA AAAATTATATCTTATAC TTTTTATTTATAAAA CLD_0294 567184 - 565973 - | EAL domain-containing protein TERM 857 566428 - 566453 + g 70 -6.3 -4.06781 | overlap 566405 566421 TTTTTACAGAGGTTA TACTTCTTTTT AGAG AAAAAGAAGAA TTTATAAATTTTAGT thiE 568066 - 567449 - | thiamine-phosphate pyrophosphorylase TERM 858 567593 - 567607 + g 75 -4.3 -5.3104 | TATAGCTACAGAAGG GATAG ATATG CTATC TTTTATTTTTGATAG thiM 568848 - 568057 - | hydroxyethylthiazole kinase thiD 569880 - 569080 - | phosphomethylpyrimidine kinase TERM 859 570159 - 570137 - H 100 -7.1 -6.11229 | opp_overlap 570137 ATTAAAACAAAAAAA GATGTACTG AAAAG CAATACATC TTTTTAATAAATTTT TERM 860 570137 - 570159 + H 70 -4.9 -4.79667 | opp_overlap 570137 ATTAAAACAAAAAAA GATGTACTG AAAAG CAATACATC TTTTTAATAAATTTT TERM 861 570714 - 570679 - H 90 -11.4 -3.18912 | gap 1, opp_overlap 570686 CTAGGGACGTAGCAA CCGTTAT-CTTCAACTT TAG AAGTTGAAGTATTACGG ACGGTAGTCATCAGA TERM 862 570686 - 570706 + H 87 -11.3 -3.02144 | opp_overlap 570679 CGTAGCAACCGTTAT CTTCAACTT TAG AAGTTGAAG TATTACGGACGGTAG TERM 863 571300 - 571290 - g 74 -3.2 -5.38951 | AAGCTATAGAAAAAA TAGG GTA CCCA GTGTTCGTAAAACCT ddlB 570905 - 571807 + | D-alanine--D-alanine ligase TERM 864 571872 - 571817 - f 100 -9.6 -4.94168 | opp_overlap 571830, overlap 571830 AGATAATAAAATAAA TTAGAATAAAAAATACTTATAGAT TGCAAGTG ATCTATAAGTATTTTTTATTTGAA TGAAGTTTTTTTCCA TERM 865 571859 - 571830 - f 88 -6.7 -5.59534 | opp_overlap 571830, overlap 571817 AATTAGAATAAAAAA TACTTATAGAT TGCAAGTG ATCTATAAGTA TTTTTTATTTGAATG TERM 866 571830 - 571859 + F 100 -8.1 -5.65927 | opp_overlap 571830 571817 AATTAGAATAAAAAA TACTTATAGATTG CAAG TGATCTATAAGTA TTTTTTATTTGAATG CLD_0289 571963 - 573105 + | putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein CLD_0288 573109 - 573981 + | high-affinity branched-chain amino acid ABC transporter, permease protein CLD_0287 573982 - 574926 + | putative high-affinity branched-chain amino acid ABC transporter, permease protein CLD_0286 574938 - 575675 + | putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein CLD_0285 575677 - 576378 + | putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein CLD_0284 576407 - 577183 + | hypothetical protein TERM 867 577269 - 577316 + F 85 -8.1 -4.69028 | opp_overlap 577272, overlap 577272 AGTATTGCGTAATAT AAAGCACTATGTAGATTATTT TAGAGT GAATAATTTATATAGTGCTTA TTTTATATCTATTAT TERM 868 577272 - 577313 + F 100 -9.8 -4.42325 | opp_overlap 577272, overlap 577269 ATTGCGTAATATAAA GCACTATGTAGATTATTT TAGAGT GAATAATTTATATAGTGC TTATTTTATATCTAT CLD_0283 577585 - 578343 + | hypothetical protein TERM 869 578563 - 578573 + G 78 -6.8 -4.52857 | opp_overlap 578563 578562 GAAAGCTTAAAACAC CTGC TAT GCAG TTTTCTATACCAGGT CLD_0282 578340 - 578780 + | hypothetical protein TERM 870 579918 - 579908 - g 76 -2.6 -5.54403 | AAAAAAGAATAAAAA TATA CAA TATA CTAAAAGATAATAAC TERM 871 580392 - 580374 - g 100 -10.4 -4.57837 | AGAGTGTTGCAAAAA TGGAGTAA TTT TTACTCCA GGAGACATATTCTAT CLD_0281 579079 - 580530 + | GntR family transcriptional regulator CLD_0280 580591 - 581160 + | hypothetical protein CLD_0279 581170 - 582021 + | beta-propeller domain-containing protein TERM 872 582057 - 582103 + F 93 -13.4 -2.90709 | opp_overlap 582061, overlap 582061 AAAGTATAGTTTTAA TGAAGAGGGTGTCTTAAAAT AGATTTA ATTTTAGGATACCCTCTTTA ATTTCATGATATTAT TERM 873 582099 - 582061 - f 70 -7.6 -3.35371 | opp_overlap 582057 582061 TATAGTTTTAATGAA GAGGGTGTCTTAAAAT AGATTTA ATTTTAGGATACCCTC TTTAATTTCATGATA TERM 874 582061 - 582099 + F 100 -12 -4.11623 | opp_overlap 582061, overlap 582057 TATAGTTTTAATGAA GAGGGTGTCTTAAAAT AGATTTA ATTTTAGGATACCCTC TTTAATTTCATGATA CLD_0278 582185 - 583078 + | NUDIX family hydrolase CLD_0277 583212 - 583694 + | hypothetical protein CLD_0276 583870 - 584394 + | hypothetical protein CLD_0275 584396 - 584986 + | methlytransferase,-like protein TERM 875 585070 - 585018 - T 81 -10.3 -2.53164 | opp_overlap 585022 585023 585028, overlap 585023 585028 TTATGTATGATTAAC CAAAATAAAAGTGTGGAGTAA AAATATAAAAA CTACTCCACACTTTTACTTTA TTTAAATTAATTCAT TERM 876 585022 - 585066 + T 72 -6 -4.50761 | opp_overlap 585018 585023 585028, overlap 585023 585028 GTATGATTAACCAAA ATAAAAGTGTGGAGTA AAAATATAAAAAC TACTCCACACTTTTAC TTTATTTAAATTAAT TERM 877 585023 - 585065 + T 80 -9.5 -3.29372 | opp_overlap 585023 585018 585028, overlap 585022 585028 TATGATTAACCAAAA TAAAAGTGTGGAGTA AAAATATAAAAAC TACTCCACACTTTTA CTTTATTTAAATTAA TERM 878 585065 - 585023 - T 100 -10.2 -4.46615 | opp_overlap 585022 585023 585028, overlap 585018 585028 TATGATTAACCAAAA TAAAAGTGTGGAGTAA AAATATAAAAA CTACTCCACACTTTTA CTTTATTTAAATTAA TERM 879 585060 - 585028 - T 78 -5.7 -5.18643 | opp_overlap 585023 585022 585028, overlap 585023 585018 TTAACCAAAATAAAA GTGTGGAGTAA AAATATAAAAA CTACTCCACAC TTTTACTTTATTTAA CLD_0274 585311 - 585072 - | hypothetical protein CLD_0273 585814 - 585332 - | hypothetical protein TERM 880 585906 - 585942 + H 75 -7.6 -3.92641 | opp_overlap 585891, overlap 585895 585891 585895 585909 TATCTTATTGTGTGT CAATAATATATTATTG AATTA CGATAATATCTTATTG TTTATAGATAAAATT TERM 881 587139 - 587118 - gH 73 -4.4 -5.10497 | AAGTTACCTAAAAAA GCCCAATA TATAGG TCTTGGGC ATCTGCATAAACCAC CLD_0272 586431 - 587660 + | putative nuclease SbcCD, D subunit TERM 882 588036 - 588024 - g 90 -4.9 -5.77988 | AGATATACAAAAAAA TATAG AGT CTATA ATAGGTTTAACAGCA TERM 883 588185 - 588175 - g 72 -4 -5.07053 | AAGTATGGCAAAAAA CTTT TAG AAAG AATAAGAAAAGCAAG sbcC 587635 - 591165 + | exonuclease SbcC CLD_0270 591193 - 591741 + | NUDIX family hydrolase TERM 884 591794 - 591832 + F 100 -19.4 -6.25578 | opp_overlap 591794 591797 TTTAAATAGAGGAAA TAAGATGTTTCAAAATAA AAT TTATTTTGAAACATCTTA TTTTTTTTGTTTCAT TERM 885 591832 - 591794 - f 100 -19.4 -3.97308 | opp_overlap 591794, overlap 591797 TTTAAATAGAGGAAA TAAGATGTTTCAAAATAA AAT TTATTTTGAAACATCTTA TTTTTTTTGTTTCAT TERM 886 591829 - 591797 - f 100 -16.7 -4.09503 | opp_overlap 591794, overlap 591794 AAATAGAGGAAATAA GATGTTTCAAAATAA AAT TTATTTTGAAACATC TTATTTTTTTTGTTT TERM 887 592024 - 592009 - f 72 -4.8 -5.0917 | CCATCAAAAAAGAAA TGAAAT AAAA ATTTCA TTGGCGTATAATTGG TERM 888 592199 - 592182 - f 78 -4.3 -5.45802 | TTTGTAAAATAAAAA TTTAATT TATG AATTAAA AAAATATAAAAAATA CLD_0269 592570 - 593421 + | hypothetical protein TERM 889 593443 - 593433 - f 82 -2.6 -6.20267 | opp_overlap 593433, overlap 593441 TTAAAAATAAAAAAA TAAT AAG ATTA ATTATTAATTGAGAA TERM 890 593505 - 593461 - f 100 -19.1 -4.48221 | opp_overlap 593464, overlap 593464 TATTAATTGAGAAAA TAATGAGGGTTTATATTAAAA TAC TTTTAATATAAACCCTCATTT TTATCTTTAATTAGT TERM 891 593464 - 593502 + F 100 -20.8 -5.23644 | opp_overlap 593461 593464 TAATTGAGAAAATAA TGAGGGTTTATATTAAAA TAC TTTTAATATAAACCCTCA TTTTTATCTTTAATT TERM 892 593502 - 593464 - f 100 -20.8 -4.34789 | opp_overlap 593464, overlap 593461 TAATTGAGAAAATAA TGAGGGTTTATATTAAAA TAC TTTTAATATAAACCCTCA TTTTTATCTTTAATT CLD_0268 593892 - 594257 + | putative cadmium resistance transcriptional regulator CadC cadA 594333 - 596561 + | cadmium-translocating P-type ATPase TERM 893 596913 - 596903 - f 72 -4 -5.36689 | overlap 596908 AAATTAAAAACAAAA GAAA ATA TTTC TAAAAAATATTGACT TERM 894 597084 - 597094 + F 83 -4 -5.96894 | TGCTGCAAACACTAG TACT TTT AGTA TTTTTTTATTTAAAT TERM 895 597564 - 597604 + F 100 -10.8 -4.97461 | opp_overlap 597597, overlap 597556 TTAAGAGGTGATGTA TAGTTTTATTAAGCGGTA TAATT TACTACTTAATAAAACTA TTTTTACTATTTATT TERM 896 597678 - 597703 + F 84 -4.8 -5.63517 | TATTTTTATTTAAAA GGATTTCTAT TGATAT ATAGAGGTCC TTTTTTATTTAAAAG TERM 897 597720 - 597737 + F 76 -2.1 -5.95539 | opp_overlap 597732, overlap 597712 TTTTTATTTAAAAGA TTTTTGT TAAT ATAAAAA TTTTTTTATTTCAAA TERM 898 598266 - 598252 - g 71 -8.6 -2.8076 | overlap 598249 AAGTAGTATTAATTA CAAAGG ATA CCTTTG AGAGGATAAAGGCGG CLD_0265 597891 - 599267 + | PhoH family protein TERM 899 599284 - 599330 + F 100 -11.8 -4.5954 | opp_overlap 599285 599288 599303, overlap 599286 TTTATACTATATGTA AGTAGAGGGTGCCTCAAAAT CAAATAT ATTTTGAGGTGCCCTCTATA TTTTATGTGATATAA TERM 900 599329 - 599285 - f 75 -8.7 -3.1544 | opp_overlap 599284 599286, overlap 599288 599303 TTATACTATATGTAA GTAGAGGGTGCCTCAAAAT CAAATAT ATTTTGAGGTGCCCTCTAT ATTTTATGTGATATA TERM 901 599286 - 599328 + F 100 -16.6 -3.90416 | opp_overlap 599285 599288 599303, overlap 599284 TATACTATATGTAAG TAGAGGGTGCCTCAAAAT CAAATAT ATTTTGAGGTGCCCTCTA TATTTTATGTGATAT TERM 902 599326 - 599288 - f 82 -10.4 -2.77658 | opp_overlap 599286 599284, overlap 599285 599303 TACTATATGTAAGTA GAGGGTGCCTCAAAAT CAAATAT ATTTTGAGGTGCCCTC TATATTTTATGTGAT CLD_0264 599535 - 600539 + | hypothetical protein CLD_0263 600549 - 601565 + | hypothetical protein TERM 903 601668 - 601624 - f 95 -10.2 -4.30987 | opp_overlap 601627, overlap 601625 601626 ATTGGGTATAATAAA TTTGAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTCTTT TGTATAATTCTATTG TERM 904 601667 - 601625 - f 100 -13.7 -3.1811 | opp_overlap 601627, overlap 601624 601626 TTGGGTATAATAAAT TTGAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTCTT TTGTATAATTCTATT TERM 905 601666 - 601626 - f 100 -17.2 -2.50545 | opp_overlap 601627, overlap 601625 601624 TGGGTATAATAAATT TGAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTCT TTTGTATAATTCTAT TERM 906 601627 - 601665 + F 100 -20.7 -4.63007 | opp_overlap 601626 601625 601624 GGGTATAATAAATTT GAGGTTGTCTCAAAATA AAATA TATTTTGAGACAACCTC TTTTGTATAATTCTA CLD_0262 601887 - 602060 + | hypothetical protein sagB 602225 - 603181 + | streptolysin associated protein SagB TERM 907 603431 - 603421 - g 85 -2.6 -5.87996 | opp_overlap 603421 CAATGAAGAAAAAAA TAAT TTA ATTA GTATTATAGATTCCT TERM 908 603729 - 603719 - g 89 -4 -5.93809 | opp_overlap 603719 GCCCTAGAAAAAAAA TCTA ATA TAGA TGATATAAAAAATCA sagC 603185 - 604267 + | streptolysin associated protein SagC sagD 604283 - 605641 + | streptolysin associated protein SagD TERM 909 605665 - 605687 + G 71 -5.6 -4.44608 | overlap 605666 TACTATTAGTTACAT TTGATCCAAT AGT ATTGGCTCAG TTATTTTTAACTAAA TERM 910 605836 - 605813 - g 77 -7.6 -4.08164 | opp_overlap 605811 605813 605832 AAAATTTTATATAAA TATAGATAGT AATT ACCATCTATA TATTATGGCTATTAT CLD_0258 605616 - 606254 + | CAAX amino terminal protease family protein CLD_0257 606262 - 606990 + | hypothetical protein TERM 911 607097 - 607116 + F 73 -4.3 -5.19879 | opp_overlap 607097, overlap 607099 AAAGCTTGGAAATGA TTGGCTA AGTACG TAGCCGA TTTTTATATTTCCAC TERM 912 607333 - 607323 - g 88 -4 -5.72622 | TGTAGAAATAAAAAA TCTT GAA AAGA AATTTAAGAATAATA sagG 607300 - 608232 + | ABC transporter, ATP-binding protein SagG TERM 913 608771 - 608756 - g 72 -5.4 -4.80417 | TACAAAAACAATAAA TGGCAA AGAT TCGCCA AGAGGAATAGATTAT sagH 608244 - 609368 + | ABC transporter, ATP-binding/permease protein SagH sagI 609370 - 610512 + | drug ABC tranporter, ATP-binding/permease protein CLD_0253 610756 - 611406 + | putative metalloprotease TERM 914 611473 - 611501 + T 85 -6.1 -5.54264 | ATTAAACTAGAAAAA GGTGATTTTTGTA TTG TACAGAGGTCATC TTTTTTTACATATTT TERM 915 611789 - 611754 - T 100 -9.2 -5.56264 | opp_overlap 611754 TTTAAATATAAAAAA GTCTAGGAACATGTCT TAAA AAATATATTCCTAGAC TTTAATAGTTTACTA TERM 916 611754 - 611789 + T 71 -7 -3.90082 | opp_overlap 611754 TTTAAATATAAAAAA GTCTAGGAACATGTCT TAAA AAATATATTCCTAGAC TTTAATAGTTTACTA CLD_0252 612342 - 611872 - | hypothetical protein TERM 917 612470 - 612430 - R 79 -8.7 -3.67402 | opp_overlap 612430 612420 612438 612441, overlap 612420 612433 612438 ACAATTTTCAAAATA TTATAAAATAATTTTGAAA TCA TCTCAAAATTATTTCAAAA AAAACATTAAAAGGT TERM 918 612467 - 612433 - R 85 -10.4 -2.93891 | opp_overlap 612430 612420 612438 612441, overlap 612420 612430 612438 ATTTTCAAAATATTA TAAAATAATTTTGAAA TCA TCTCAAAATTATTTCA AAAAAAACATTAAAA TERM 919 612462 - 612438 - R 85 -8.1 -4.60713 | opp_overlap 612430 612420 612438 612441, overlap 612420 612433 612430 CAAAATATTATAAAA TAATTTTGAAA TCA TCTCAAAATTA TTTCAAAAAAAACAT CLD_0251 613722 - 612460 - | arsenical pump family protein TERM 920 613650 - 613634 - G 76 -10.1 -2.83732 | overlap 613631 613629 ATAAGCATAATAGCA GCTCCGC CTA GCGAAGC AACAACCCTGTTTAC CLD_0250 615159 - 613849 - | hypothetical protein TERM 921 614496 - 614512 + g 71 -6.7 -3.92799 | opp_overlap 614499, overlap 614493 614499 TATTGAATTTTTTAG TAATACT TTT AGTATTA TATTTATTATTTGTT trmB 615435 - 616088 + | tRNA (guanine-N(7)-)-methyltransferase CLD_0248 616301 - 616564 + | hypothetical protein TERM 922 616587 - 616632 + T 100 -15.3 -3.01119 | gap 1, opp_overlap 616587 616595, overlap 616589 616595 TATTCTTTTAAATAA TATTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAATA TATCTCTAAATAAAT TERM 923 616632 - 616587 - T 100 -13.1 -3.9122 | gap 1, opp_overlap 616587 616589 616595, overlap 616595 TATTCTTTTAAATAA TATTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAATA TATCTCTAAATAAAT TERM 924 616589 - 616630 + T 95 -13.5 -3.05993 | gap 1, opp_overlap 616587 616595, overlap 616587 616595 TTCTTTTAAATAATA TTAAAACAGGTATTTCTATA AAT TA-AGGAATACCTGTTTTAA TATATCTCTAAATAA TERM 925 616595 - 616624 + T 82 -8.1 -4.41956 | gap 1, opp_overlap 616587 616595, overlap 616589 616587 TAAATAATATTAAAA CAGGTATTTCTATA AAT TA-AGGAATACCTG TTTTAATATATCTCT TERM 926 616624 - 616595 - T 72 -5.9 -4.52347 | gap 1, opp_overlap 616595 616589 616587, overlap 616587 TAAATAATATTAAAA CAGGTATTTCTATA AAT TA-AGGAATACCTG TTTTAATATATCTCT CLD_0247 617153 - 616659 - | putative thiol peroxidase fabG 617524 - 618267 + | 3-oxoacyl-[acyl-carrier-protein] reductase TERM 927 618558 - 618545 - g 74 -5.3 -4.90321 | overlap 618556 AAAAATAAGAGAAAA GAATG TAGA CATTC CTATAGTTATACTAA CLD_0245 618330 - 619283 + | response regulator TERM 928 619374 - 619329 - T 72 -6.2 -4.52101 | gap 1, opp_overlap 619337, overlap 619337 AAGAAGTAAGGAAAA GAAGGAAAGGCCC-CCAGCAA TTATT TTGCGGGCAGGCCTTTTATTC ATACTAAAATCTACT TERM 929 619366 - 619337 - T 73 -6.4 -4.21737 | gap 1, opp_overlap 619337, overlap 619329 AGGAAAAGAAGGAAA GGCCC-CCAGCAA TTATT TTGCGGGCAGGCC TTTTATTCATACTAA CLD_0244 621854 - 619554 - | putative peptidoglycan hydrolase TERM 930 621991 - 621971 - H 82 -9.9 -2.94704 | overlap 621966 TAATAATATACCACA TTTTGGAAT AAA ATTCCAAAA TACACTTCATATACT CLD_0243 622163 - 623107 + | alpha/beta fold family hydrolase TERM 931 623119 - 623160 + F 100 -18.5 -5.56568 | opp_overlap 623121 GTAAATGGTGTTTAA TATGTGGTTAGAAAGATAT TTTA ATATTTTTCTAACCACATA TTTTTTTAATAATAT TERM 932 623158 - 623121 - f 100 -14.5 -3.0264 | opp_overlap 623119 AAATGGTGTTTAATA TGTGGTTAGAAAGATAT TTTA ATATTTTTCTAACCACA TATTTTTTTAATAAT CLD_0242 623369 - 624616 + | response regulator TERM 933 624829 - 624870 + F 100 -19.2 -5.35224 | opp_overlap 624812 624829 624834 624839 ATTTAGCTAGATATA GCCAACATAATTAGTTTA AATATG TAAACTAATTATGTTGGC TTTTGTTTTTATAAA TERM 934 624870 - 624829 - f 100 -19.2 -3.01119 | opp_overlap 624829, overlap 624812 624834 624839 ATTTAGCTAGATATA GCCAACATAATTAGTTTA AATATG TAAACTAATTATGTTGGC TTTTGTTTTTATAAA TERM 935 624865 - 624834 - f 87 -10.5 -3.17797 | opp_overlap 624829, overlap 624812 624829 624839 GCTAGATATAGCCAA CATAATTAGTTTA AATATG TAAACTAATTATG TTGGCTTTTGTTTTT CLD_0241 624913 - 625497 + | HDIG domain-containing protein TERM 936 626571 - 626558 - g 70 -3.9 -5.10064 | TTTAACATATAAAAA TTCTA TTAA TAGAA AAGATGAATTTGGGG CLD_0240 625533 - 627563 + | methyl-accepting chemotaxis protein TERM 937 627764 - 627712 - f 93 -9.7 -4.40358 | opp_overlap 627718 627722 627759, overlap 627716 627718 AGTCATCGGATAAAA TTAAGATAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTATTTTTA CAAAAAAATTGAATA TERM 938 627760 - 627716 - f 91 -10.5 -3.75517 | opp_overlap 627718 627722 627759, overlap 627712 627718 ATCGGATAAAATTAA GATAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTATT TTTACAAAAAAATTG TERM 939 627758 - 627718 - f 100 -13.1 -3.45405 | opp_overlap 627718 627722, overlap 627716 627712 CGGATAAAATTAAGA TAAAGTTATAAACAATA TTTTATG TATTGTTTATAACTTTA TTTTTACAAAAAAAT TERM 940 627718 - 627758 + F 100 -13.8 -4.56775 | opp_overlap 627716 627712 627718, overlap 627722 CGGATAAAATTAAGA TAAAGTTATAAACAATAT TTTAT GTATTGTTTATAACTTTA TTTTTACAAAAAAAT TERM 941 627722 - 627754 + F 100 -10.2 -4.85782 | opp_overlap 627718 627716 627712, overlap 627718 TAAAATTAAGATAAA GTTATAAACAATAT TTTAT GTATTGTTTATAAC TTTATTTTTACAAAA TERM 942 628265 - 628251 - g 75 -5.8 -4.80417 | TAGAAAAAGAAGAAA TTATAG AAG CTATAA AAAATGTACTAAAAA CLD_0239 627899 - 628693 + | response regulator TERM 943 628842 - 628811 - f 100 -11.2 -5.31519 | ACATTGAAAGAAAAA TTTACAAGTAAAAA CAAG TTTTCACTTGTAAA AAAGCATAGAGGAAT TERM 944 629083 - 629114 + F 100 -8.8 -5.86976 | GTGGCAACGCGGATA CTTCCGTCCCATAT TTAT ATATGAGATGGGAG TTTTTTATTTTATGG serS 629175 - 630452 + | seryl-tRNA synthetase TERM 945 630991 - 631009 + F 76 -6.2 -4.85599 | opp_overlap 630990 CTAAAGGAAGAGGAT TTAAATTA TTA TAATTTAA TTTTTATAGAATCAA TERM 946 631065 - 631045 - f 82 -9.9 -3.06302 | opp_overlap 631042, overlap 631047 ATTATTTTCATTTAA TATTATAGG AAA CCTATAATA AAATATATATATACT TERM 947 631063 - 631047 - f 71 -8.1 -3.08996 | opp_overlap 631042, overlap 631045 TATTTTCATTTAATA TTATAGG AAA CCTATAA TAAAATATATATATA CLD_0237 631207 - 633561 + | putative ATP-dependent helicase CLD_0236 634043 - 633852 - | hypothetical protein TERM 948 634147 - 634201 + r 100 -13.9 -3.28924 | gap 1, opp_overlap 634148 634152 634153, overlap 634148 634151 CGGGAGTTTATATAA ACATAGTTCTTGACTTTAGAGGGAGT TTTT ACTCCCACTAAAGTCAAGAAA-ATGG TTATCCAGGGGCATA TERM 949 634200 - 634148 - R 100 -17.4 -4.05033 | gap 1, opp_overlap 634147 634148 634151, overlap 634152 634153 GGGAGTTTATATAAA CATAGTTCTTGACTTTAGAGGGAGT TTTT ACTCCCACTAAAGTCAAGAAA-ATG GTTATCCAGGGGCAT TERM 950 634148 - 634200 + r 100 -17.4 -2.57211 | gap 1, opp_overlap 634148 634152 634153, overlap 634147 634151 GGGAGTTTATATAAA CATAGTTCTTGACTTTAGAGGGAGT TTTT ACTCCCACTAAAGTCAAGAAA-ATG GTTATCCAGGGGCAT TERM 951 634151 - 634198 + r 100 -15.8 -2.82623 | opp_overlap 634148 634152 634153, overlap 634148 634147 AGTTTATATAAACAT AGTTCTTGACTTTAGAGGGAGT TTTT ACTCCCACTAAAGTCAAGAAAA TGGTTATCCAGGGGC TERM 952 634197 - 634152 - R 100 -19.3 -3.38294 | opp_overlap 634151 634148 634147, overlap 634148 634153 GTTTATATAAACATA GTTCTTGACTTTAGAGGGAGT TTTT ACTCCCACTAAAGTCAAGAAA ATGGTTATCCAGGGG TERM 953 634196 - 634153 - R 100 -22.8 -2.62495 | opp_overlap 634151 634148 634147, overlap 634152 634148 TTTATATAAACATAG TTCTTGACTTTAGAGGGAGT TTTT ACTCCCACTAAAGTCAAGAA AATGGTTATCCAGGG CLD_0235 635156 - 634536 - | GntR family transcriptional regulator TERM 954 635351 - 635327 - H 75 -8.8 -3.13728 | opp_overlap 635330, overlap 635330 ATTATTGATATTTAA CAACTTTATA TATGC TATAAAGTTG TAACTATAATAAATA ceo 635410 - 636363 + | N(5)-(carboxyethyl)ornithine synthase TERM 955 636541 - 636494 - T 71 -7.2 -3.8512 | opp_overlap 636494 636501, overlap 636501 TACGGAGCATAAGAA TATAAAAGACCACTTGTATGTT TATA AAAAAGCAAGTGGTCTTTTTTA TTATATTATAAAAGT TERM 956 636494 - 636541 + T 84 -9.4 -3.75378 | opp_overlap 636494 636501, overlap 636501 TACGGAGCATAAGAA TATAAAAGACCACTTGTATGTT TATA AAAAAGCAAGTGGTCTTTTTTA TTATATTATAAAAGT TERM 957 636534 - 636501 - T 73 -5.3 -4.82162 | opp_overlap 636494 636501, overlap 636494 CATAAGAATATAAAA GACCACTTGTATGTT TATA AAAAAGCAAGTGGTC TTTTTTATTATATTA TERM 958 636501 - 636534 + T 100 -7.5 -5.64304 | opp_overlap 636501 636494, overlap 636494 CATAAGAATATAAAA GACCACTTGTATGTT TATA AAAAAGCAAGTGGTC TTTTTTATTATATTA CLD_0233 638573 - 636567 - | fructose-1,6-bisphosphatase CLD_0232 638857 - 639219 + | hypothetical protein CLD_0231 639395 - 639808 + | hemerythrin-like metal-binding domain-containing protein TERM 959 639830 - 639814 - T 73 -3.1 -5.59357 | overlap 639817 AGTATATTAAAAAAA TCATATA TTT TATATAA ATATTAATTAAAATA CLD_0230 640717 - 640022 - | hypothetical protein TERM 960 640953 - 640983 + H 100 -9.9 -4.51378 | opp_overlap 640951 640953 TTTACATAATATATA GCAGCTTTGTATA TTTTT TATATAAGGCTGC TTTTATAATATAAGT TERM 961 641086 - 641111 + H 81 -10.5 -2.6027 | opp_overlap 641088 641103 641104 CTAATATACCTAAAA AACTCCCACTT ATAT AAGTGGGAGTA TAAGTTCACTTTTAC TERM 962 641109 - 641088 - H 100 -13.1 -5.15381 | opp_overlap 641086, overlap 641103 641104 AATATACCTAAAAAA CTCCCACTT ATAT AAGTGGGAG TATAAGTTCACTTTT TERM 963 641722 - 641677 - g 73 -5.9 -4.64048 | gap 1, opp_overlap 641694, overlap 641680 641681 GAGCAGATAAAGAAA TTAGCGTATTTCTAAAATATAA AGA TTATATTTTAGAAATA-GAAAA AATGGATCCATATGA TERM 964 641718 - 641681 - g 82 -11.1 -2.53379 | gap 1, opp_overlap 641694, overlap 641680 641677 AGATAAAGAAATTAG CGTATTTCTAAAATATAA AGA TTATATTTTAGAAATA-G AAAAAATGGATCCAT TERM 965 641741 - 641725 - g 90 -6.6 -5.59879 | TAGAAATAGAAAAAA TGGATC CATAT GATCCA TTAAAAAAAACTTGT TERM 966 641799 - 641778 - g 75 -4.5 -5.02715 | opp_overlap 641778 ACAGGAAATGAAAAA CTAAATCTA ATAT TAGAGTTAG TAAGTTTAAAACCAT CLD_0229 641478 - 641900 + | hypothetical protein TERM 967 641922 - 641947 + T 100 -9.9 -5.47159 | gap 1 TAAATTGTTTTTATA CTGCTGATCAAA TCT TTTG-TCAGCAG TTTTTTATATTGCAC CLD_0228 642784 - 642134 - | Fe/Mn family superoxide dismutase TERM 968 642906 - 642890 - H 71 -5.3 -4.61807 | opp_overlap 642892 AAAAGAAAATATAAA TATATTT AAA AAATATA AATTTGTGGTAAAAT CLD_0227 642976 - 643815 + | metallo-beta-lactamase family protein TERM 969 643814 - 643865 + T 100 -9.3 -4.94992 | gap 2, opp_overlap 643817, overlap 643817 ATATATTAGAAATAT AAAGCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGCTTA TTTTTATACCTTTAA TERM 970 643817 - 643862 + T 100 -11 -4.55383 | gap 2, opp_overlap 643817, overlap 643814 TATTAGAAATATAAA GCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGC TTATTTTTATACCTT TERM 971 643862 - 643817 - T 100 -11 -4.41609 | gap 2, opp_overlap 643817 643814 TATTAGAAATATAAA GCTATAGGAATAGAT--ATTAA GCTT TTAATTTATCTATTCCTATAGC TTATTTTTATACCTT CLD_0226 644212 - 643913 - | hypothetical protein CLD_0225 646213 - 644360 - | hypothetical protein TERM 972 644995 - 645007 + g 85 -4.8 -5.63012 | CATTAATAATAGATC GGCT TCTCC AGCC TTTTTCTTTATTTTT TERM 973 645767 - 645743 - G 73 -8.7 -3.20832 | opp_overlap 645741, overlap 645742 645744 TCTTAAATTTAAAAT TGTCAGTATTA TTA TAATACTGACT GCTAATATAATCTTA TERM 974 645766 - 645744 - G 100 -12.2 -2.52017 | opp_overlap 645741, overlap 645743 645742 CTTAAATTTAAAATT GTCAGTATTA TTA TAATACTGAC TGCTAATATAATCTT TERM 975 645846 - 645814 - G 70 -8.6 -2.72036 | gap 1, opp_overlap 645838, overlap 645823 GAAAGGCAGATATTA TTGCAGCAA-CTCCA GCGC TGGAGCTTACCGCAA CGGTTAATATATAAT TERM 976 646283 - 646249 - H 73 -3 -5.69976 | opp_overlap 646262 ATAAAAAAAATAAAA TCTTCTTTTTAAATAT ATA ATATATTATAAGAAGA CCAATGTAATTTATT CLD_0224 646486 - 646608 + | hypothetical protein TERM 977 646732 - 646700 - T 72 -8.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLD_0223 647757 - 647293 - | AsnC family transcriptional regulator TERM 978 648103 - 648115 + H 70 -3.5 -5.39905 | opp_overlap 648059, overlap 648060 648111 ATTATTTACAATCTC TTTTA TGT TAAAA TTTTTATTCTTTAAT TERM 979 648130 - 648146 + H 73 -5.3 -4.79752 | opp_overlap 648132, overlap 648127 648143 ATTTTTATTCTTTAA TATAATA TGT TATTATA TTTTATATTGTTACA TERM 980 648215 - 648178 - H 78 -6.7 -4.74285 | opp_overlap 648178 648176 648182 648208 ATTTATAATATAAAA TTAATATAAACATTTTT AAGT AAAAGTATTTATATTAA TATCTTGATATATTA CLD_0222 648282 - 648656 + | hypothetical protein TERM 981 648681 - 648712 + F 70 -3 -5.56112 | opp_overlap 648681, overlap 648683 AGTTTCATATAAAAA CACACTAAAATCCA GTTT TAGAGGTTAGTGTG TTTTTTAGTTTTTAT TERM 982 648712 - 648681 - f 72 -5.2 -4.9725 | opp_overlap 648681 648683 AGTTTCATATAAAAA CACACTAAAATCCA GTTT TAGAGGTTAGTGTG TTTTTTAGTTTTTAT TERM 983 649133 - 649117 - f 90 -3.1 -6.38039 | opp_overlap 649106 GATTTAAAAAAAAAA TTTTTTA TTT CAAAAAA ATATATAAAAACTTA CLD_0221 649280 - 650653 + | amino acid permease family protein TERM 984 650783 - 650820 + F 88 -8.1 -4.8048 | gap 1, opp_overlap 650783 650785 ATTAAGGAACAAAAA GTTATGAATTTTGGAATA TAA TATTCTAAA-TTCATAGC TTTTTACTCTAAAAA TERM 985 650820 - 650783 - f 70 -3.7 -5.20534 | gap 1, opp_overlap 650783, overlap 650785 ATTAAGGAACAAAAA GTTATGAATTTTGGAATA TAA TATTCTAAA-TTCATAGC TTTTTACTCTAAAAA CLD_0220 651091 - 652440 + | amino acid permease family protein TERM 986 652518 - 652537 + F 93 -10 -4.18401 | opp_overlap 652518 652517 TAGATTTATTGAAAG CCCTGTGC AAAT GTACAGGG TTTTAGAATCTATAA CLD_0219 652788 - 653297 + | hexapeptide repeat-containing transferase TERM 987 653374 - 653355 - g 76 -2.8 -5.50723 | TTATGAAAATAAAAA CACCTAGA ACTT TCTTAGTG TTTATTGCTGTAGTA CLD_0218 653342 - 654214 + | metallo-beta-lactamase family protein TERM 988 654420 - 654369 - T 95 -12.4 -3.29829 | opp_overlap 654369 654370 654373, overlap 654370 654372 TACATTCTTGGATAA CGATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCT GTTTATGAAGTATTT TERM 989 654369 - 654421 + T 93 -10 -3.94276 | gap 1, opp_overlap 654369 654370 654372, overlap 654370 654373 TACATTCTTGGATAA C-GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCTG TTTATGAAGTATTTT TERM 990 654419 - 654370 - T 100 -15.9 -2.57683 | opp_overlap 654369 654370 654373, overlap 654369 654372 ACATTCTTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATGAAGTATT TERM 991 654370 - 654419 + T 100 -13.7 -3.54848 | opp_overlap 654370 654369 654372, overlap 654369 654373 ACATTCTTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATGAAGTATT TERM 992 654417 - 654372 - T 91 -12.7 -2.82742 | opp_overlap 654370 654369 654373, overlap 654370 654369 ATTCTTGGATAACGA TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAAC TCTGTTTATGAAGTA TERM 993 654373 - 654416 + T 100 -14 -2.60065 | opp_overlap 654372 654370 654369, overlap 654370 654369 TTCTTGGATAACGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAA CTCTGTTTATGAAGT CLD_0217 657097 - 654479 - | calcium-translocating P-type ATPase, PMCA-type TERM 994 655373 - 655351 - G 78 -6.4 -4.74132 | opp_overlap 655351 655350 ATACTCTAGCAAAAA CTCTTAAATT CTC AATTTTAGAG CTTAATTCTGTATCT TERM 995 657240 - 657207 - R 100 -17.7 -5.38054 | opp_overlap 657209 TTTTATAAATAAAAA GACCTTTGCCCTATA TTTA TATAGGACAAAGGTC TTGCAATCTCTTAAA TERM 996 657209 - 657238 + r 90 -12.3 -3.09648 | opp_overlap 657207 TTATAAATAAAAAGA CCTTTGCCCTATA TTTA TATAGGACAAAGG TCTTGCAATCTCTTA CLD_0216 657927 - 657391 - | chromate transporter protein CLD_0215 658463 - 657927 - | chromate transport protein CLD_0214 658637 - 659227 + | PemK family protein TERM 997 659278 - 659240 - f 78 -4.4 -5.48213 | gap 1, opp_overlap 659240 659250 659266, overlap 659266 TAGTTAAAACAAAAA TTATAAAGAATTTAATA AAAAAA TATTAAATT-TTTATAA ATTTATGTTGTATAA TERM 998 659435 - 659453 + F 100 -10.4 -5.42514 | opp_overlap 659434 659437 TATAACATATCATAG GACTGATT CTA AATCAGTC TTTTTTGGTTTATAA TERM 999 659500 - 659528 + F 86 -5.5 -5.65678 | opp_overlap 659521, overlap 659526 AGTAATTTTTTGTGA GTATTAAATTTAT AGT ATATATTTAGTAC TTTTTTATATTTTAT TERM 1000 659565 - 659607 + F 72 -7.5 -3.53855 | gap 1, opp_overlap 659565 659571 659577, overlap 659571 659577 AAAAAAGCATTAAAT GAAAAATATAAT-TGTTTTA CAAA TAAAACATATTATATTTATC TATATTTTTAAAAGA TERM 1001 659601 - 659571 - f 72 -5.1 -5.01811 | gap 1, opp_overlap 659571 659565 659577, overlap 659565 659577 GCATTAAATGAAAAA TATAAT-TGTTTTA CAAA TAAAACATATTATA TTTATCTATATTTTT CLD_0213 659674 - 660099 + | hypothetical protein TERM 1002 660116 - 660135 + T 75 -5.8 -4.9448 | TTAATTATTATTTAT CATTTTCT AAGT AGAAAGTG TTTTATTTAATAAAT TERM 1003 660201 - 660146 - T 100 -21.3 -3.05715 | opp_overlap 660146 660150 660162, overlap 660150 660162 AAGTGTTTTATTTAA TAAATAGACATAAAAATTATTAAAT TATTGG ATTTAATAATTTTTATGTCTATTTA TTATTTAGGATAGTT TERM 1004 660146 - 660201 + T 100 -22 -3.95036 | opp_overlap 660146 660150 660162, overlap 660150 660162 AAGTGTTTTATTTAA TAAATAGACATAAAAATTATTAAATT ATTG GATTTAATAATTTTTATGTCTATTTA TTATTTAGGATAGTT TERM 1005 660150 - 660197 + T 100 -18.4 -4.57581 | opp_overlap 660150 660146 660162, overlap 660146 660162 GTTTTATTTAATAAA TAGACATAAAAATTATTAAATT ATTG GATTTAATAATTTTTATGTCTA TTTATTATTTAGGAT TERM 1006 660197 - 660150 - T 100 -17.7 -4.20516 | opp_overlap 660146 660150 660162, overlap 660146 660162 GTTTTATTTAATAAA TAGACATAAAAATTATTAAAT TATTGG ATTTAATAATTTTTATGTCTA TTTATTATTTAGGAT TERM 1007 660185 - 660162 - T 70 -4.1 -5.1104 | opp_overlap 660150 660146 660162, overlap 660150 660146 AAATAGACATAAAAA TTATTAAAT TATTGG ATTTAATAA TTTTTATGTCTATTT TERM 1008 660162 - 660185 + T 74 -4.8 -5.1104 | opp_overlap 660162 660150 660146, overlap 660150 660146 AAATAGACATAAAAA TTATTAAATT ATTG GATTTAATAA TTTTTATGTCTATTT TERM 1009 660260 - 660230 - T 90 -10.6 -3.37205 | opp_overlap 660229 660230, overlap 660228 TTATAAAAATAGATA GTGCCTCAAAATTA AAT TTATTTTGAGACAC GTTATTAAATTTCAA nadE 662221 - 660305 - | glutamine-dependent NAD(+) synthetase TERM 1010 661569 - 661557 - G 72 -7.7 -3.70033 | GAGGAATATACATAA GATGC TAA GCATC TACCACTTTGAGATG TERM 1011 662502 - 662520 + G 78 -3 -5.5454 | TGCTGCTTTGCTGTT GGATCTTG CTA CTAGTTCC TTTTTATTTGTTTGG CLD_0211 662443 - 662883 + | hypothetical protein TERM 1012 663019 - 663034 + G 79 -7.6 -4.19879 | overlap 663010 CTTTAGAGCCAGGTT GGCATA TAAT TATGCC TTTTGCGGATTTTGT CLD_0210 662886 - 663824 + | SPFH domain-containing protein/band 7 family protein TERM 1013 663866 - 663826 - f 81 -7.1 -4.77442 | opp_overlap 663829 663831, overlap 663829 663831 AAGATAATAAATAAA GAAGATCCATAGATTTG ATTTACA CAAATCTATGGATGTTT TTTTATCTAACAATT TERM 1014 663829 - 663863 + F 100 -8.8 -5.71712 | opp_overlap 663829 663826 663831, overlap 663831 ATAATAAATAAAGAA GATCCATAGATTTG ATTTACA CAAATCTATGGATG TTTTTTTATCTAACA TERM 1015 663863 - 663829 - f 86 -8.8 -4.45024 | opp_overlap 663829 663831, overlap 663826 663831 ATAATAAATAAAGAA GATCCATAGATTTG ATTTACA CAAATCTATGGATG TTTTTTTATCTAACA TERM 1016 663831 - 663861 + F 100 -11.4 -4.50122 | opp_overlap 663831 663829 663826, overlap 663829 AATAAATAAAGAAGA TCCATAGATTTG ATTTACA CAAATCTATGGA TGTTTTTTTATCTAA TERM 1017 663861 - 663831 - f 95 -11.4 -3.79677 | opp_overlap 663829 663831, overlap 663829 663826 AATAAATAAAGAAGA TCCATAGATTTG ATTTACA CAAATCTATGGA TGTTTTTTTATCTAA TERM 1018 663906 - 663921 + F 72 -7.6 -3.51879 | opp_overlap 663905 663903 663906 663908, overlap 663903 AATTAGAGGAAATAT TATGGG ATAT CCCATA TATTATTGTGATATA CLD_0209 664186 - 664299 + | CAAX amino terminal protease family protein CLD_0208 664299 - 664994 + | CAAX amino terminal protease family protein pepP 665214 - 666449 + | xaa-pro aminopeptidase TERM 1019 666851 - 666841 - T 71 -6.8 -4.11216 | opp_overlap 666841 TCCGTACTCTGAAAA GTGC GTC GCAC TTTCCTTAGAGGGTG CLD_0206 667323 - 666874 - | hypothetical protein CLD_0205 667912 - 667391 - | acetyltransferase CLD_0204 668428 - 667979 - | AraC family transcription regulator CLD_0203 668823 - 669035 + | 2Fe-2S-binding domain-containing protein TERM 1020 669154 - 669142 - f 79 -4.9 -5.46276 | overlap 669135 669143 AAGATACAGAAAAAA TTTTC ATT GAAAA ATTAAATGAAACATT TERM 1021 669172 - 669156 - f 77 -6.7 -4.66163 | overlap 669143 ATTTTCATTGAAAAA TTAAATG AAA CATTTAA GGTTAAAAATTAGCA TERM 1022 669235 - 669182 - f 100 -9.9 -4.67234 | opp_overlap 669183 669185, overlap 669183 669185 ATTTAAGGTTAAAAA TTAGCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGCTCT TATTATCTTACTATA TERM 1023 669183 - 669234 + F 100 -15.6 -3.99229 | opp_overlap 669182 669183 669185, overlap 669185 TTTAAGGTTAAAAAT TAGCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGCTC TTATTATCTTACTAT TERM 1024 669234 - 669183 - f 100 -13.4 -3.39618 | opp_overlap 669183 669185, overlap 669182 669185 TTTAAGGTTAAAAAT TAGCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGCTC TTATTATCTTACTAT TERM 1025 669185 - 669232 + F 100 -18.2 -3.57523 | opp_overlap 669183 669182 669185, overlap 669183 TAAGGTTAAAAATTA GCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGC TCTTATTATCTTACT TERM 1026 669232 - 669185 - f 100 -16 -3.26237 | opp_overlap 669185 669183, overlap 669183 669182 TAAGGTTAAAAATTA GCACTATGAATATTATTGAAAT AAAT AATTCGATAATATTCATAGTGC TCTTATTATCTTACT TERM 1027 669336 - 669318 - f 72 -7.6 -3.55444 | opp_overlap 669302 669299 669317 669314 TTTTTAGTGTCTAAA TTAAAAAG TTG CTTTTTAA ATGATTATAATTGTT CLD_0202 669998 - 670906 + | hypothetical protein TERM 1028 670943 - 670967 + F 95 -9.5 -4.91109 | opp_overlap 670943 AGTAAAGATAAAAAA TACATTTCATG GTT TATGAAATGTA TTTTTATCCTAGCGG TERM 1029 670967 - 670943 - f 100 -8.8 -5.5762 | opp_overlap 670943 AGTAAAGATAAAAAA TACATTTCAT GGTTT ATGAAATGTA TTTTTATCCTAGCGG CLD_0201 671175 - 671684 + | hypothetical protein CLD_0200 671696 - 673339 + | carbon starvation protein CstA CLD_0199 673804 - 674493 + | hypothetical protein TERM 1030 674654 - 674680 + F 80 -6.8 -4.98468 | opp_overlap 674667 TTTTTTATATTGGTA GTTTTAAAATTA ATT TTATTTTAAAAC TTGTTTTTTTATTGT TERM 1031 675075 - 675088 + F 91 -8.1 -5.07011 | TTTAGCTGTCAATGG CTGGG GAGG CCCAG TTTTTAATTTATATA TERM 1032 677302 - 677291 - g 70 -5.8 -4.22554 | CTACTGAAGAAATAA CTGC ATCA GCAG AGGAACAAGCGGCAG CLD_0198 675412 - 677403 + | methyl-accepting chemotaxis protein TERM 1033 677414 - 677437 + T 100 -8.2 -5.32944 | opp_overlap 677414 TATAAGTTTGAAAAA GCTGGCAATA ATAA TATTGCTGGC TTTTTTCCTTATAAA CLD_0197 679460 - 677802 - | ABC transporter, ATP-binding protein TERM 1034 679490 - 679468 - H 93 -7 -5.69473 | GATACCATAAAAAAA TCCCTCCTTA AAT TTAGGAGAGA GTATATAATAATTCC mscL 680038 - 680442 + | large conductance mechanosensitive channel protein CLD_0195 680772 - 681455 + | proton-coupled thiamine transporter YuaJ TERM 1035 681499 - 681467 - T 100 -9.3 -5.54079 | opp_overlap 681468 681469, overlap 681469 GTAAAAATTAAAAAA TAGGGTATTTCAAAA TCG CTTTGAAATACCCCT TTTTTATATTTTTAA TERM 1036 681468 - 681498 + T 100 -9.9 -5.69068 | opp_overlap 681467 681469, overlap 681469 TAAAAATTAAAAAAT AGGGTATTTCAAA ATCGC TTTGAAATACCCC TTTTTTATATTTTTA TERM 1037 681469 - 681497 + T 100 -13.4 -3.9778 | opp_overlap 681467 681469, overlap 681468 AAAAATTAAAAAATA GGGTATTTCAAA ATCGC TTTGAAATACCC CTTTTTTATATTTTT TERM 1038 681497 - 681469 - T 100 -14.1 -4.37346 | opp_overlap 681469 681468, overlap 681467 AAAAATTAAAAAATA GGGTATTTCAAAA TCG CTTTGAAATACCC CTTTTTTATATTTTT CLD_0194 681727 - 681590 - | hypothetical protein CLD_0193 681981 - 683117 + | SecC motif-containing protein TERM 1039 683347 - 683404 + F 93 -9.5 -4.66609 | TGAAAAAAGATTATG TGCTTCCCTTAAAGTAGATAGATTT AAAAATAA AAATCTGTATATATTAAGGGGAGCA TTTTTGCGTACAATA TERM 1040 683582 - 683555 - f 74 -8.6 -3.3442 | overlap 683553 GACAATACTATAACA CTAGTGTACTAT TTAG ATAGTACAGTAG AACTTTGGAGGTGAA CLD_0192 683601 - 683981 + | GntR family transcriptional regulator CLD_0191 683974 - 684669 + | ABC transporter, ATP-binding protein CLD_0190 684669 - 685430 + | putative ABC transporter, permease protein TERM 1041 685460 - 685494 + F 100 -13.8 -4.2123 | opp_overlap 685453 685460 AGTAAGAATGACAGA GGGTGTCTTAAAATTA AAT TTATTTTAAGGCACCC TTTATTCGATGACTA TERM 1042 685494 - 685460 - f 90 -11.6 -3.06573 | opp_overlap 685460, overlap 685453 AGTAAGAATGACAGA GGGTGTCTTAAAATTA AAT TTATTTTAAGGCACCC TTTATTCGATGACTA TERM 1043 685558 - 685539 - f 72 -7.8 -3.53811 | CCCATCTTCTTCAAA GTGGGAGT AAAA ACTCCCTC CAAAGCCAAGAACTC TERM 1044 686097 - 686125 + F 77 -6.7 -4.56969 | overlap 686100 ATTATTGTAAAGTCT TTACCCCTGTG ATTTTTA CGCAGGGGTTA TTTATTTATAAAATT TERM 1045 686100 - 686122 + F 82 -8.4 -4.38748 | overlap 686097 ATTGTAAAGTCTTTA CCCCTGTG ATTTTTA CGCAGGGG TTATTTATTTATAAA TERM 1046 686987 - 686999 + G 70 -6.3 -4.15222 | opp_overlap 686977 686983 686987 AAGACCAAAAACTAA GTTTG TTG CAAAC TTTATTGGAGAAACT TERM 1047 687344 - 687326 - g 71 -3.1 -5.20333 | overlap 687329 CACCCATAATAAAAA CTATGTG TTTGC CACATGG AATCCTAAACATGCA potA 686292 - 687374 + | spermidine/putrescine ABC transporter, ATP-binding protein TERM 1048 687425 - 687390 - g 70 -8.6 -2.64155 | gap 1, opp_overlap 687393, overlap 687386 687394 TGTGGGGGAAATTTA GCAAT-GCTTTTTCAAA TAT TTTTAAAAAGCAATTGC ATAATAAAAATACGG TERM 1049 687420 - 687394 - g 72 -8.2 -3.25088 | opp_overlap 687393, overlap 687390 687386 GGGGAAATTTAGCAA TGCTTTTTCAAA TAT TTTTAAAAAGCA ATTGCATAATAAAAA potB 687374 - 688333 + | spermidine/putrescine ABC transporter, permease protein PotB CLD_0187 688333 - 690177 + | putative spermidine/putrescine ABC transporter, permease protein/spermidine/putrescine-binding protein TERM 1050 690192 - 690225 + T 100 -14.9 -6.14618 | opp_overlap 690201 AAATAAAAAATTTCG CCAGGTAAAGAATTA TTTT TAATTCTTTACTTGG TTTTTTTATTTTGTA TERM 1051 690343 - 690379 + T 100 -9.8 -5.00138 | gap 1, opp_overlap 690342 690345, overlap 690346 AACATTCAAAGTAAT TATTAGGCTAACAGATA TTAG TATTTGTTAGCCTA-TA TTTTTAGTTTCAATA TERM 1052 690346 - 690377 + T 100 -14 -4.11472 | opp_overlap 690345 690342, overlap 690343 ATTCAAAGTAATTAT TAGGCTAACAGATA TTAG TATTTGTTAGCCTA TATTTTTAGTTTCAA CLD_0186 691285 - 690416 - | AraC family transcription regulator TERM 1053 691367 - 691322 - H 100 -17.9 -3.21747 | gap 1, opp_overlap 691322 TTATCCGATGACTAA CCGCTCTAATACTCCCATCTTC TTC AAAG-TTGGAGTATTAGAGCGG TTACGTCTCTGGATA TERM 1054 691322 - 691367 + H 100 -17.2 -3.16475 | gap 1, opp_overlap 691322 TTATCCGATGACTAA CCGCTCTAATACTCCCATCTT CTTCA AAGTT-GGAGTATTAGAGCGG TTACGTCTCTGGATA TERM 1055 691435 - 691384 - H 100 -23.4 -3.28924 | opp_overlap 691384 691385, overlap 691385 691387 TACGTCTCTGGATAA CGATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAATCT GTTTATATATACATT TERM 1056 691384 - 691436 + H 100 -23.2 -4.15061 | gap 1, opp_overlap 691384 691385 691387, overlap 691385 TACGTCTCTGGATAA C-GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAATCTG TTTATATATACATTA TERM 1057 691434 - 691385 - H 100 -26.9 -2.57211 | opp_overlap 691384 691385, overlap 691384 691387 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAATC TGTTTATATATACAT TERM 1058 691385 - 691434 + H 100 -26.9 -3.66398 | opp_overlap 691385 691384 691387, overlap 691384 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAATC TGTTTATATATACAT TERM 1059 691432 - 691387 - H 100 -23.7 -2.82623 | opp_overlap 691385 691384, overlap 691385 691384 GTCTCTGGATAACGA TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCTTAGAAA TCTGTTTATATATAC CLD_0185 691725 - 692975 + | proton/sodium-glutamate symporter CLD_0184 693108 - 693455 + | cupin domain-containing protein TERM 1060 693539 - 693519 - T 85 -9.8 -3.18429 | opp_overlap 693519, overlap 693509 TAAAATGTGTATTAA GGGAACTT TTAAC AAGTTCCC TTAATAAAGTTCCCA TERM 1061 693519 - 693539 + T 85 -9.8 -3.18681 | opp_overlap 693509 693519 TAAAATGTGTATTAA GGGAACTT TTAAC AAGTTCCC TTAATAAAGTTCCCA CLD_0183 694546 - 693698 - | pentapeptide repeat-containing protein CLD_0181 695450 - 695644 + | hypothetical protein TERM 1062 695691 - 695672 - f 78 -8 -4.23007 | opp_overlap 695675 TAGATAATCTTAAAA CTATTTAC AATG GTAAATAG TTCAGGCTGTTGATA TERM 1063 695696 - 695726 + F 100 -13.5 -4.42081 | ATGGTAAATAGTTCA GGCTGTTGATAAA TATGC TTTGTCAACAGCC TTTTAAATTTATATT TERM 1064 695906 - 695894 - g 72 -7.7 -3.60348 | opp_overlap 695893 695894 TCCAATATGACACAA CAGCA GCT TGCTG ATTTAGTTTCAGTTT CLD_0180 695846 - 696058 + | DNA binding protein CLD_0179 696048 - 696485 + | hypothetical protein lepB 696553 - 697161 + | signal peptidase I TERM 1065 697242 - 697278 + F 100 -12.7 -5.30686 | opp_overlap 697242 TAAAATTATAAAAAA TTAAAGTGGTATTTATT TTT AGTAAATATCACTTTAA TTTTTTATGGATATT TERM 1066 697278 - 697242 - f 100 -8.3 -5.4588 | opp_overlap 697242 TAAAATTATAAAAAA TTAAAGTGGTATTTATT TTT AGTAAATATCACTTTAA TTTTTTATGGATATT TERM 1067 697797 - 697817 + F 100 -8.5 -5.42975 | opp_overlap 697797 697801 AGAAAGTTTTAAAAA TAAATTTTG TTT CAAAATTTA TTTTTATTTATGTAC TERM 1068 697817 - 697797 - f 85 -8.5 -4.6526 | opp_overlap 697797, overlap 697801 AGAAAGTTTTAAAAA TAAATTTTG TTT CAAAATTTA TTTTTATTTATGTAC TERM 1069 697813 - 697801 - f 70 -4.9 -4.86385 | opp_overlap 697797, overlap 697797 AGTTTTAAAAATAAA TTTTG TTT CAAAA TTTATTTTTATTTAT CLD_0177 697982 - 698683 + | LytTr family DNA-binding response regulator CLD_0176 699285 - 699404 + | hypothetical protein CLD_0175 699444 - 699569 + | hypothetical protein CLD_0174 700265 - 700411 + | hypothetical protein CLD_0173 701018 - 702370 + | radical SAM domain-containing protein TERM 1070 702667 - 702632 - g 100 -10.8 -4.12942 | opp_overlap 702632, overlap 702622 TGAAAGTGTTGAAAA TTTAATATTACATGAA TTTG TTCATGTAGTATTAAA TTTAAAGGCACAATC TERM 1071 702632 - 702667 + G 100 -13 -3.53224 | opp_overlap 702632 702622 TGAAAGTGTTGAAAA TTTAATATTACATGAA TTTG TTCATGTAGTATTAAA TTTAAAGGCACAATC CLD_0172 702363 - 702953 + | hypothetical protein CLD_0171 702990 - 703487 + | hypothetical protein TERM 1072 704018 - 704030 + G 73 -3.5 -5.32565 | TAATGGTTATTTTTT TATAT GCA ATATA TTTTTTCATTAATTG CLD_0170 703522 - 705234 + | putative ABC transporter, ATP-binding protein/permease protein CLD_0169 705412 - 706161 + | putative lipoprotein CLD_0168 706184 - 706663 + | acetyltransferase TERM 1073 708745 - 708728 - g 95 -7.1 -5.97979 | opp_overlap 708728 708726 ATAATAACAAAAAAA CATTTAC CATA GTAAATG TCTTAATATGTATCT CLD_0167 706660 - 709128 + | putative ABC transporter, permease protein CLD_0166 709143 - 709823 + | ABC transporter, ATP-binding protein CLD_0165 710505 - 710768 + | hypothetical protein TERM 1074 710977 - 711013 + F 100 -9.1 -5.51402 | opp_overlap 710976 710977 710980 ATAAATTAAAAAGAT TAAGGTATAATAAATAT ATA AAATTTATTATATCTTA TTTTTTTGAATCTAT CLD_0164 711096 - 711962 + | degV family protein TERM 1075 712034 - 712080 + F 80 -3.4 -5.84432 | gap 1, opp_overlap 712034 TAAATAAATTAAAAG CCTTAATCATAAAGTAAATTT TTTTTT AAAAGTACTTTAT-ATTAAGG TTTTTTTGTGTTATA CLD_0163 712360 - 712872 + | hypothetical protein TERM 1076 712906 - 712938 + F 86 -3.7 -5.99154 | gap 1, opp_overlap 712899 ACTACAAATAAAAAA TACAC-TAGTAAAC TCATGC GTTTATTACGTGTA TTTTTTTATTTGCTA TERM 1077 713016 - 712997 - f 83 -6.5 -5.24129 | opp_overlap 712980 712996 712997 TTTTTTCATAAAAAA CCTTATG TTTATG CATAAGG CTTTATTTATAATTT TERM 1078 713170 - 713204 + F 78 -5.3 -5.26155 | AGAAAAGTTAATACG TTGATTTTATATTTG ATATA CAAATTTAAAATTAA TTTTTATGTTTCTAT CLD_0162 713359 - 715269 + | sulfatase family protein TERM 1079 715355 - 715300 - T 100 -21.8 -3.99494 | opp_overlap 715300 TCAATTTAATAATAA TAGGGTTATGTTAAGAAAATATTATA CTAA CATTATATTTTCTTAACATAACCCTA TTTTATATAACATAA TERM 1080 715300 - 715355 + T 100 -21.1 -4.54047 | opp_overlap 715300 TCAATTTAATAATAA TAGGGTTATGTTAAGAAAATATTAT ACTAAC ATTATATTTTCTTAACATAACCCTA TTTTATATAACATAA TERM 1081 715401 - 715432 + T 95 -12.4 -3.62522 | TAAACAGAGTTCTTG GCTTTGGAGGGAAT TTTT ACTCCCTCTAAAGC TTATTAACAGAATTC TERM 1082 715437 - 715476 + T 73 -8.8 -2.90615 | gap 1, opp_overlap 715445, overlap 715441 715442 715444 CCCTCTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 1083 715442 - 715472 + T 79 -9.8 -2.75769 | opp_overlap 715445, overlap 715441 715437 715444 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1084 715469 - 715445 - T 90 -10.1 -3.71552 | opp_overlap 715444 715442 715441 715437 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLD_0161 717049 - 715637 - | sigma-54 dependent transcriptional regulator TERM 1085 717265 - 717319 + r 100 -17 -2.75963 | opp_overlap 717265 717269 717275, overlap 717269 717273 TATTTGATAATTAAA TAAGTAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAAGCAACCTCTTTATTTA CTTTAAAATAAAAAT TERM 1086 717319 - 717265 - R 100 -17 -4.00124 | opp_overlap 717265 717269 717273, overlap 717269 717275 TATTTGATAATTAAA TAAGTAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAAGCAACCTCTTTATTTA CTTTAAAATAAAAAT TERM 1087 717269 - 717315 + r 100 -15.6 -4.07246 | opp_overlap 717265 717269 717275, overlap 717265 717273 TGATAATTAAATAAG TAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAAGCAACCTCTTTA TTTACTTTAAAATAA TERM 1088 717315 - 717269 - R 100 -17.8 -3.06655 | opp_overlap 717269 717265 717273, overlap 717265 717275 TGATAATTAAATAAG TAAAAAGGTTGCTTCAAAAT AGATTTA ATTTTGAAGCAACCTCTTTA TTTACTTTAAAATAA TERM 1089 717273 - 717311 + r 100 -12 -4.62772 | opp_overlap 717269 717265 717275, overlap 717269 717265 AATTAAATAAGTAAA AAGGTTGCTTCAAAAT AGATTTA ATTTTGAAGCAACCTC TTTATTTACTTTAAA TERM 1090 717309 - 717275 - R 100 -14.6 -5.04356 | opp_overlap 717273 717269 717265, overlap 717269 717265 TTAAATAAGTAAAAA GGTTGCTTCAAAAT AGATTTA ATTTTGAAGCAACC TCTTTATTTACTTTA CLD_0160 718607 - 717384 - | NupC family nucleoside transporter TERM 1091 717631 - 717643 + g 75 -4.1 -5.26316 | overlap 717632 GAATATGCTACGAAC TCGTT TAT AACGG TTTTTTGTCCAATAA TERM 1092 717833 - 717820 - G 72 -5.3 -4.76075 | overlap 717830 717832 ATTATAGCAACAAAA GCTAT TAAC ATAGC TCCAACATTAAGAGC TERM 1093 718682 - 718665 - H 93 -4.9 -6.28401 | gap 1 TAAAAAACAAAAAAA CCTTCACA ATA TG-GAAGG CTTAAATATAAACAA TERM 1094 718761 - 718734 - H 82 -9.4 -3.41125 | overlap 718735 718760 CGTATACATCTACAA CCTTCATATTAT TACA ATAATATGAAGA AAAATTTACTTTTCT TERM 1095 718760 - 718735 - H 81 -10.7 -2.64354 | overlap 718734 GTATACATCTACAAC CTTCATATTAT TACA ATAATATGAAG AAAAATTTACTTTTC TERM 1096 719660 - 719685 + H 100 -11.9 -5.84432 | opp_overlap 719660 ACCGCGGAATATATA CCTTTCGTCCC TTTT GGGATGAAGGG TTTTTTTATATTATG TERM 1097 720206 - 720183 - g 72 -6.8 -4.15788 | AATTTTTCCAAGAAA GAGGATTTGT CTAT ACAAATACTC CAATAATAACAGGTA TERM 1098 720860 - 720846 - g 72 -4.2 -5.01497 | opp_overlap 720845 ATGATGATAGAAAAA CTGTTG CAG CAGCAG ACTTACTTGTACCAG asnS 719729 - 721120 + | asparaginyl-tRNA synthetase TERM 1099 721214 - 721158 - f 100 -11.3 -4.79756 | opp_overlap 721174, overlap 721174 TATATAATTTAAAAA GATAAATTTATAAAAAGTAGCACAA TTTTATT TGGTGCTACTTTTTATATTTTTATC AATAGAAAGATTTTT TERM 1100 721198 - 721174 - f 70 -4.3 -4.95896 | opp_overlap 721174, overlap 721158 ATAAATTTATAAAAA GTAGCACAA TTTTATT TGGTGCTAC TTTTTATATTTTTAT TERM 1101 721174 - 721198 + F 76 -4.3 -5.38398 | opp_overlap 721174 721158 ATAAATTTATAAAAA GTAGCACAA TTTTATT TGGTGCTAC TTTTTATATTTTTAT TERM 1102 721325 - 721304 - f 70 -3.1 -5.43621 | opp_overlap 721304 721319 721319 721322, overlap 721314 ATAAATTATAAAAAA TATATAAGT ATTG ACTGATATA TCATTTAATGATATA TERM 1103 721319 - 721343 + F 75 -8.1 -3.49884 | opp_overlap 721304 721314 721326 721334, overlap 721304 721319 721322 721326 TATATAAGTATTGAC TGATATATCAT TTA ATGATATATTA TATTTAATGATATAT TERM 1104 721319 - 721360 + F 72 -8.5 -3.12606 | gap 1, opp_overlap 721304 721314 721326 721334 721351 721354 721356 721358, overlap 721304 721319 721322 721326 TATATAAGTATTGAC TGATATATCATTTAATGATA TAT TAT-ATTTAATGATATATCA TTAAATGATATATAG TERM 1105 721322 - 721340 + F 75 -7.6 -3.87323 | opp_overlap 721304 721314 721326 721334, overlap 721304 721319 721319 721326 ATAAGTATTGACTGA TATATCAT TTA ATGATATA TTATATTTAATGATA TERM 1106 721326 - 721368 + F 100 -14.7 -2.93747 | opp_overlap 721314 721326 721334 721351 721354 721356 721358, overlap 721322 721319 721319 GTATTGACTGATATA TCATTTAATGATATATTAT ATTTA ATGATATATCATTAAATGA TATATAGAATTTCAT TERM 1107 721368 - 721326 - f 89 -12.5 -2.91912 | opp_overlap 721322 721319 721319 721326, overlap 721314 721334 721351 721354 721356 721358 GTATTGACTGATATA TCATTTAATGATATATTAT ATTTA ATGATATATCATTAAATGA TATATAGAATTTCAT CLD_0158 721414 - 721734 + | PadR family transcriptional regulator CLD_0157 721751 - 722287 + | hypothetical protein TERM 1108 722300 - 722326 + F 71 -7.4 -4.00842 | opp_overlap 722299 722300, overlap 722297 TAATATATACAATAG CCTAAACTGC CTATAGA GTAGTTTAGG TATTTATTTTCTAAT CLD_0156 722490 - 722945 + | LytR family transcriptional regulator CLD_0155 722947 - 723645 + | hypothetical protein TERM 1109 723848 - 723798 - f 95 -11.5 -3.64142 | opp_overlap 723799 723804 723808, overlap 723799 723801 723808 GAAAAGAGTATAGAA CTAGAATAAAGCCTTTGTACTTT ATAAG AAAGTATGAAGGCTTTATTCTAT ATTAGCCTTATTTTG TERM 1110 723847 - 723799 - f 100 -15 -2.77401 | opp_overlap 723799 723804 723808, overlap 723798 723801 723808 AAAAGAGTATAGAAC TAGAATAAAGCCTTTGTACTTT ATAAG AAAGTATGAAGGCTTTATTCTA TATTAGCCTTATTTT TERM 1111 723799 - 723847 + F 100 -19.4 -3.14422 | opp_overlap 723798 723799 723801 723808, overlap 723804 723808 AAAAGAGTATAGAAC TAGAATAAAGCCTTTGTACTTT ATAAG AAAGTATGAAGGCTTTATTCTA TATTAGCCTTATTTT TERM 1112 723845 - 723801 - f 93 -13.2 -2.91736 | opp_overlap 723799 723804 723808, overlap 723799 723798 723808 AAGAGTATAGAACTA GAATAAAGCCTTTGTACTTT ATAAG AAAGTATGAAGGCTTTATTC TATATTAGCCTTATT TERM 1113 723804 - 723842 + F 100 -13.5 -3.6914 | opp_overlap 723801 723799 723798 723808, overlap 723799 723808 AGTATAGAACTAGAA TAAAGCCTTTGTACTTT ATAAG AAAGTATGAAGGCTTTA TTCTATATTAGCCTT TERM 1114 723808 - 723838 + F 100 -9.9 -4.46254 | opp_overlap 723801 723799 723798 723808, overlap 723804 723799 TAGAACTAGAATAAA GCCTTTGTACTTT ATAAG AAAGTATGAAGGC TTTATTCTATATTAG CLD_0154 724067 - 724954 + | AraC family transcriptional regulator CLD_0153 725383 - 726294 + | CAAX amino terminal protease family protein CLD_0152 726307 - 726717 + | DNA-binding protein CLD_0151 727301 - 728440 + | putative lipoprotein CLD_0150 728538 - 729650 + | putative lipoprotein TERM 1115 729703 - 729745 + F 79 -8.9 -3.54926 | opp_overlap 729708, overlap 729701 729699 729708 CTAAATAGTGGTGAG TATAAGAATATTACTGA AAAAAAGAG TTAGTAATATTCTTATA TGTATTTTTAAAATA CLD_0149 729825 - 730508 + | DNA-binding response regulator CLD_0148 730513 - 731934 + | sensor histidine kinase TERM 1116 732032 - 732014 - f 74 -4.7 -5.10029 | opp_overlap 732014 ATGAATTTCAAAAAA CTTAATT TTAAT AATTAAG TTTTGCGTTAGTTTT TERM 1117 732168 - 732124 - f 71 -8.1 -3.08133 | gap 2, opp_overlap 732105 732134 TATCTAGGGACGTAA CCACTCT-TTACTCCCA-CTT TGAAG AAGATGGGAGTATTAGAGCGG ATAGTCATCGGATAA CLD_0147 732271 - 732987 + | D-alanyl-D-alanine carboxypeptidase family protein TERM 1118 733073 - 733051 - g 70 -5 -4.53857 | opp_overlap 733053, overlap 733048 733053 ATGAAAAAGAAATAA GAGATTTATT GGA AATAAATCTT ATAAATGAAGGATAT TERM 1119 733071 - 733053 - g 74 -7.6 -3.84447 | opp_overlap 733053, overlap 733051 733048 GAAAAAGAAATAAGA GATTTATT GGA AATAAATC TTATAAATGAAGGAT CLD_0146 733008 - 733700 + | DNA-binding response regulator CLD_0145 733729 - 734811 + | sensor histidine kinase TERM 1120 734886 - 734865 - T 73 -6.5 -4.20981 | opp_overlap 734866, overlap 734858 734866 TTAATAAATTATAAA GCCCCATGC AAAT GCATAGGGT TTTTGAATAATCTAA TERM 1121 734866 - 734885 + T 83 -7.8 -4.69664 | opp_overlap 734865 734858 734866 TAATAAATTATAAAG CCCCATGC AAAT GCATAGGG TTTTTGAATAATCTA TERM 1122 734885 - 734866 - T 82 -10 -3.11504 | opp_overlap 734866, overlap 734865 734858 TAATAAATTATAAAG CCCCATGC AAAT GCATAGGG TTTTTGAATAATCTA CLD_0144 736110 - 734971 - | hypothetical protein CLD_0143 737063 - 736251 - | response regulator TERM 1123 736387 - 736370 - G 70 -3.5 -5.0925 | CTTCAAAACTAAAAA TAGAATT TGAG AACTCTA CAAAGATGTCATTCA CLD_0142 738358 - 737060 - | sensor histidine kinase TERM 1124 737724 - 737740 + g 70 -5.2 -4.66609 | TTTCCCATGACTTTT TCTATG TTATC CATAGA TTTTTCCATAAGATA rodA 738755 - 739915 + | rod shape-determining protein RodA TERM 1125 739957 - 739987 + F 100 -14.9 -3.62522 | gap 1, opp_overlap 739950, overlap 739958 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCC-CTGAAGC TTATTAACAGAATTA TERM 1126 740246 - 740269 + F 75 -5.5 -4.99861 | opp_overlap 740234 740267, overlap 740234 AATGAACTTTAGTAG TTCTTAATT TGGCGT AATTAAGAA TTTTTGTAATTCCTC CLD_0140 740306 - 740437 + | hypothetical protein cfa 741646 - 740468 - | cyclopropane-fatty-acyl-phospholipid synthase TERM 1127 741719 - 741689 - H 71 -8.6 -3.11559 | opp_overlap 741688 741695, overlap 741695 741699 ATTATAACCTTAATA TTTAAATATATACT TAT AGTAAATATTTAAA GTTAAATGGTCAATT TERM 1128 741812 - 741794 - H 87 -7.4 -5.18995 | overlap 741797 AATATAATATAAAAA GAAGTGGT CAT ACCACTAC TGAGATGAAAATAAG TERM 1129 741809 - 741797 - H 83 -7.7 -4.65219 | overlap 741794 ATAATATAAAAAGAA GTGGT CAT ACCAC TACTGAGATGAAAAT TERM 1130 741840 - 741865 + H 79 -7.1 -4.57073 | opp_overlap 741840 741842, overlap 741842 741863 AAGGCATAATAAAAA TGCAAAATATT TTTA AATATTTTGTA TTTTTAGAAAGGATA TERM 1131 741865 - 741840 - H 74 -4.9 -5.21236 | opp_overlap 741840 741842 741863, overlap 741842 AAGGCATAATAAAAA TGCAAAATATT TTTA AATATTTTGTA TTTTTAGAAAGGATA TERM 1132 741842 - 741863 + H 75 -7.5 -3.90048 | opp_overlap 741842 741840, overlap 741840 GGCATAATAAAAATG CAAAATATT TTTA AATATTTTG TATTTTTAGAAAGGA CLD_0138 741974 - 743005 + | hypothetical protein TERM 1133 743010 - 743030 + F 100 -10.5 -5.80364 | opp_overlap 743010 CGTTATTATAAAAAA TCTCTCAGT ATA ACTGGGAGA TTTTTTTATTGAAAT TERM 1134 743030 - 743010 - f 100 -8.3 -5.31275 | opp_overlap 743010 CGTTATTATAAAAAA TCTCTCAGT ATA ACTGGGAGA TTTTTTTATTGAAAT CLD_0137 743175 - 744854 + | putative ABC transporter, ATP-binding protein/permease protein TERM 1135 744963 - 744935 - T 83 -7.5 -4.70772 | opp_overlap 744937 744950, overlap 744937 ATAGATTTAATAAAA TAGGACTTACTGT TAT AAAGTAAGTCCTT GCTTTATCTATTGAG TERM 1136 744937 - 744961 + T 90 -10.1 -3.69088 | opp_overlap 744935 744937, overlap 744950 AGATTTAATAAAATA GGACTTACTGT TAT AAAGTAAGTCC TTGCTTTATCTATTG TERM 1137 744961 - 744937 - T 93 -10.1 -3.96156 | opp_overlap 744937 744950, overlap 744935 AGATTTAATAAAATA GGACTTACTGT TAT AAAGTAAGTCC TTGCTTTATCTATTG csaA 745319 - 744990 - | csaA protein TERM 1138 745471 - 745444 - R 100 -9.4 -5.13521 | opp_overlap 745448 745451, overlap 745433 745432 AAACTATTTAAAAAA TAAAGAACTATT TTAA AATAGTCCTTTA AAATGATACCTATAT TERM 1139 745519 - 745553 + r 79 -3.6 -5.66684 | opp_overlap 745527 745530, overlap 745520 745527 745530 TCTAGATAAGTCTTT TCTAAAATCTAGCTAG TTT TTAGCTTGTTTTTTGA TTTTTTTCTAAATTC TERM 1140 745527 - 745545 + r 75 -3.8 -5.62552 | opp_overlap 745527 745530, overlap 745520 745519 745530 AGTCTTTTCTAAAAT CTAGCTAG TTT TTAGCTTG TTTTTTGATTTTTTT CLD_0135 746252 - 745527 - | AraC family transcriptional regulator TERM 1141 746561 - 746535 - R 100 -13.2 -4.14615 | opp_overlap 746533 AAAAATGTTTTAAAA TATCCTGCCTAA TTA TTAGACAGGATA AAAATTTGTTATTGT CLD_0134 747101 - 746550 - | cupin domain-containing protein TERM 1142 747185 - 747160 - H 70 -4.1 -5.22258 | opp_overlap 747165, overlap 747165 TAAAGTAAAATAAAA CTAACGTTAAA TATA TTTAACATTCG TAAGATATTATAACG CLD_0133 747358 - 747948 + | HDIG domain-containing protein TERM 1143 748070 - 748094 + F 100 -7.1 -6.01725 | opp_overlap 748070 TTATTCTAGGGTAAA GCACTAATCCT TAG GGGATAGGTGC TTTTTTCTTTTTGTT TERM 1144 748692 - 748682 - g 81 -2.6 -5.7946 | TTGGGAATAAAAAAA TAAA AGA TTTA AACTATTCTCAGAAA CLD_0132 748315 - 749331 + | LytR family transcriptional regulator TERM 1145 749985 - 750005 + G 72 -7.7 -3.56837 | opp_overlap 749985 749987, overlap 749981 GCGGAATGTATGATA GATTATCTG TTT TAGATAATC TTATGCTCTTTGCAG CLD_0131 749714 - 750559 + | bacitracin transport ATP-binding protein BcrA CLD_0130 750559 - 750741 + | ABC transporter, permease CLD_0129 750748 - 751290 + | hypothetical protein TERM 1146 751356 - 751314 - T 75 -7.1 -4.28323 | opp_overlap 751321 ATTAACTAATATAAA TGTGGAATCCCAGTAATAA TAAAG CTGTTGCTGGGATTCCATA TGAGTGAATATTTAT CLD_0128 752591 - 751368 - | amidase TERM 1147 752470 - 752486 + g 70 -8.7 -2.67803 | overlap 752467 752466 CTTTTTGAAAATTCT GCTCTTG CTT CAAGGGC TGGCTTTGATAAAGA TERM 1148 753320 - 753339 + H 93 -6.4 -5.9218 | ATTGTTGAATTTTAA GCTGTGGG AGTA TCCATAGC TTTTTTTATTATATA TERM 1149 753686 - 753703 + G 72 -4.2 -5.0133 | TTTAGAACCGACTGA TTTGAC TATGAT GTCAAA TTTTTTAAGAGGATG TERM 1150 754045 - 754035 - g 76 -5.4 -5.01422 | opp_overlap 754035, overlap 754036 GCACATAAAAATAAA GTTC AAG GAAC TATCGTTGAAACGTC TERM 1151 754779 - 754769 - g 88 -4 -5.72622 | TGGAGAAATAAAAAA CTTT TCA AAAG AACATCCTGATTTTG CLD_0127 753423 - 755318 + | MutS domain-containing protein CLD_0126 755493 - 756101 + | hypothetical protein TERM 1152 756473 - 756503 + T 70 -7.8 -3.34398 | overlap 756471 AAGCTCAGATGGTTT CAGATAAGTTTG TAGTAGC TAAACTTATCTG TATTTAGGAAAAAGC TERM 1153 756512 - 756558 + T 100 -14.7 -4.04806 | opp_overlap 756517, overlap 756517 TTATCTGTATTTAGG AAAAAGCGAATGCCAGACA ATGGATTTG TGTCTGGCGTTCGCTTTTG TTATTTGCTGTGCGA TERM 1154 756553 - 756517 - T 100 -12.4 -4.7497 | opp_overlap 756512 756517 TGTATTTAGGAAAAA GCGAATGCCAGACA ATGGATTTG TGTCTGGCGTTCGC TTTTGTTATTTGCTG TERM 1155 756517 - 756553 + T 100 -14.6 -5.02606 | opp_overlap 756517, overlap 756512 TGTATTTAGGAAAAA GCGAATGCCAGACA ATGGATTTG TGTCTGGCGTTCGC TTTTGTTATTTGCTG CLD_0125 757070 - 756597 - | putative nimA protein TERM 1156 756840 - 756827 - G 70 -8.1 -3.14344 | opp_overlap 756826 TACCGTTTGCATCAA GCAGG AGCT CCTGC ATATCATACATGGTA CLD_0124 757506 - 757093 - | hypothetical protein TERM 1157 757660 - 757650 - H 73 -3.2 -5.47159 | CCCAAGAAATAAAAA TGCG GGC CACA CCTTTTTGCCAAAAA TERM 1158 758339 - 758317 - g 80 -6.4 -4.91712 | TGGAAGGCAGAAAAA TGGATATTTT AAG AAAAAATCCA GCAGTGTATTTTCAA CLD_0123 758130 - 758609 + | pyridoxamine 5'-phosphate oxidase family protein TERM 1159 758744 - 758716 - T 100 -10.3 -4.39407 | opp_overlap 758701 758716 758723 TGAAAGAATTTAAAA GCGAGAAGTGCCT GCA AGGTACTTTTCGC TTTAATTACCAACAT TERM 1160 758716 - 758744 + T 100 -14.7 -3.90291 | opp_overlap 758716, overlap 758701 758723 TGAAAGAATTTAAAA GCGAGAAGTGCCT GCA AGGTACTTTTCGC TTTAATTACCAACAT TERM 1161 758723 - 758737 + T 75 -6.4 -4.39318 | opp_overlap 758716, overlap 758716 758701 ATTTAAAAGCGAGAA GTGCCT GCA AGGTAC TTTTCGCTTTAATTA TERM 1162 758817 - 758829 + T 100 -7.7 -5.27779 | TTTACTTCCGTTCAA GCTCT AGG AGAGC TTTTTTCATATTCAA CLD_0122 759255 - 758803 - | methylated-DNA--protein-cysteine methyltransferase CLD_0121 759800 - 759252 - | methylphosphotriester-DNA alkyltransferase CLD_0120 760453 - 759797 - | methylated-DNA--protein-cysteine methyltransferase CLD_0119 762001 - 760592 - | GntR family transcriptional regulator TERM 1163 761341 - 761374 + g 79 -10.5 -3.03441 | opp_overlap 761340 761345 CACGAACCGGAACAG GCAATATTTTAAAGC CGTT GCTTTGAAATACTGC TCTTGCACCGTCATA TERM 1164 762513 - 762554 + H 100 -11.7 -3.89435 | gap 1, opp_overlap 762518, overlap 762514 762516 TGTTTGATGTATCTA TGACAGCAATCCCCACCGGT ACA ACTTGTGGG-ATTGCTGTCC TTTCGCTTATTTGGC TERM 1165 762514 - 762553 + H 100 -15.2 -2.92938 | gap 1, opp_overlap 762518, overlap 762513 762516 GTTTGATGTATCTAT GACAGCAATCCCCACCGGT ACA ACTTGTGGG-ATTGCTGTC CTTTCGCTTATTTGG TERM 1166 762516 - 762551 + H 90 -12 -3.00451 | gap 1, opp_overlap 762518, overlap 762514 762513 TTGATGTATCTATGA CAGCAATCCCCACCGGT ACA ACTTGTGGG-ATTGCTG TCCTTTCGCTTATTT TERM 1167 762926 - 762898 - g 82 -6.1 -5.29716 | opp_overlap 762898 CCAATACAAGAAAAA TCTATTCCTTATA TAT TAGATGGAATAGA TTTGGTTGGGTGTGC rhlE 762808 - 764085 + | ATP-dependent RNA helicase RhlE TERM 1168 764109 - 764132 + F 100 -6.8 -6.09196 | opp_overlap 764109 AAATATAAAAAAAGA TGATTTCTGT ATTA ACAGGAGTCA TTTTTTTATTTTGGG CLD_0117 764674 - 765162 + | putative rubrerythrin TERM 1169 765202 - 765172 - f 75 -5.4 -5.00196 | opp_overlap 765175, overlap 765173 765175 TTTTAAAGAATAAAA TTACCTGCATCTTA ATT TTAGATGCAGGTTT TTAAATTATAAGAGA TERM 1170 765201 - 765173 - f 79 -8.9 -3.59033 | opp_overlap 765175, overlap 765172 765175 TTTAAAGAATAAAAT TACCTGCATCTTA ATT TTAGATGCAGGTT TTTAAATTATAAGAG TERM 1171 765175 - 765199 + F 100 -11.5 -4.78149 | opp_overlap 765173 765172 765175 TAAAGAATAAAATTA CCTGCATCTTA ATT TTAGATGCAGG TTTTTAAATTATAAG TERM 1172 765199 - 765175 - f 95 -11.5 -3.35275 | opp_overlap 765175, overlap 765173 765172 TAAAGAATAAAATTA CCTGCATCTTA ATT TTAGATGCAGG TTTTTAAATTATAAG TERM 1173 765262 - 765283 + F 79 -8.9 -3.52475 | opp_overlap 765264 765266 765280 AAATTTCATCTTAGA TATAGTTGA CTAA TCAACTATA TTGTGATATATTGAA CLD_0116 765334 - 765771 + | MarR family transcriptional regulator CLD_0115 765799 - 767232 + | EmrB/QacA family drug resistance transporter TERM 1174 767245 - 767229 - T 73 -6.7 -4.22369 | ATTAAAACCAAATAA CTAAAAA GAA TTTTTAG GCCCCATTATTGAAA CLD_0114 768685 - 767627 - | hypothetical protein TERM 1175 768964 - 768995 + H 89 -10.2 -3.62522 | overlap 768965 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCTTCCTGAAGC TTATTAACAGAATTC TERM 1176 769000 - 769039 + H 73 -8.8 -2.90615 | gap 1, opp_overlap 769008, overlap 769004 769005 769007 CTTCCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 1177 769005 - 769035 + H 79 -9.8 -2.75769 | opp_overlap 769008, overlap 769004 769000 769007 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 1178 769032 - 769008 - H 90 -10.1 -3.71552 | opp_overlap 769007 769005 769004 769000 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLD_0113 769200 - 769925 + | ABC transporter, ATP-binding protein CLD_0112 769922 - 770968 + | ABC transporter, permease protein TERM 1179 770984 - 771010 + F 100 -18.2 -4.17701 | opp_overlap 770984 TTGAACATACTATAA CACCCCTGATTA ATT TAATCAGGGGTG TTTATGATTTATAAC TERM 1180 771010 - 770984 - f 100 -18.2 -3.52475 | opp_overlap 770984 TTGAACATACTATAA CACCCCTGATTA ATT TAATCAGGGGTG TTTATGATTTATAAC CLD_0111 771084 - 771758 + | hypothetical protein CLD_0110 773236 - 772046 - | hypothetical protein TERM 1181 773666 - 773677 + G 71 -3 -5.27399 | overlap 773655 AGGGGTAGGGGATAC TACT TCTA AGTA TTTTTTACTATCTTA CLD_0109 773361 - 774236 + | LysR family transcriptional regulator CLD_0108 774359 - 776053 + | hypothetical protein TERM 1182 776076 - 776100 + F 70 -3.5 -5.29846 | opp_overlap 776070 TAATTATAATAAAAA GCATTTAACCT TAT AGGGAGAATGC TTTTTGTTTGAAATT CLD_0107 776170 - 779178 + | DNA repair helicase Rad25 TERM 1183 779196 - 779222 + T 90 -6.6 -5.65927 | opp_overlap 779196 ATATAAAGAAAAAGA TGTAGCACTATT ATT AGCGGTGCTACA TTTTTTCTTTAGCTA CLD_0106 779616 - 779218 - | putative mutator mutT protein CLD_0105 779864 - 780079 + | hypothetical protein CLD_0104 780076 - 780255 + | sortase TERM 1184 780446 - 780434 - f 74 -6.3 -4.61162 | opp_overlap 780438 780441 ATATTAAATAAGAAA TCGTT GAC AACGA AAGTTGTAATGTAGT TERM 1185 780550 - 780515 - f 72 -6.3 -4.52589 | opp_overlap 780515 GCTTGCTACACAAAA CCTATTTACAGATAT TTTGTT ATGTCTGGAAATAGG TTTTTTTGCTTTGGG TERM 1186 780515 - 780550 + F 100 -8.5 -5.72207 | opp_overlap 780515 GCTTGCTACACAAAA CCTATTTACAGATAT TTTGTT ATGTCTGGAAATAGG TTTTTTTGCTTTGGG CLD_0103 780577 - 781416 + | BglG family transcriptional antiterminator CLD_0102 781621 - 783462 + | PTS system, beta-glucoside-specific, IIABC component TERM 1187 783760 - 783750 - g 76 -2.6 -5.51402 | ACACATGTAAAAAAA TTAT GTG ATAA GACTTTAAAATGTAG CLD_0101 783474 - 784292 + | phosphotransferase domain-containing protein TERM 1188 784960 - 784972 + G 78 -4.1 -5.40474 | AAATTATTCATATAC TTTCC AGT GGAGA TTTTTTTGGAGAACT CLD_0100 784716 - 785426 + | Crp/FNR family transcriptional regulator TERM 1189 785453 - 785443 - f 75 -6.8 -4.54047 | opp_overlap 785443 TTATTTTAGAGAAAA GTGC TTT GCAC TTTTTTATTTTTTTG TERM 1190 785443 - 785453 + F 100 -6.8 -6.12458 | opp_overlap 785443 TTATTTTAGAGAAAA GTGC TTT GCAC TTTTTTATTTTTTTG CLD_0099 785584 - 786816 + | metallo-beta-lactamase family protein TERM 1191 786894 - 786933 + F 73 -8.8 -2.90496 | gap 1, opp_overlap 786902, overlap 786898 786899 786901 TTCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAA TERM 1192 786899 - 786929 + F 79 -9.8 -2.75769 | opp_overlap 786902, overlap 786898 786894 786901 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1193 786926 - 786902 - f 90 -10.1 -3.71552 | opp_overlap 786901 786899 786898 786894 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLD_0098 787109 - 787807 + | putative scdA protein TERM 1194 788135 - 788119 - g 72 -8.1 -3.3375 | opp_overlap 788118, overlap 788114 ATGAACATGATAAGA TTCTAAG ATT CTTAGAA GATTTAGAAAAAGTG CLD_0097 787833 - 788528 + | hypothetical protein TERM 1195 788626 - 788655 + F 100 -10.2 -5.76633 | opp_overlap 788626 788629 TTAATAGATATTATA TAATTGCATTGG GATAAA CCAATGCGATTA TTTTTTTATATATAG CLD_0096 788840 - 789424 + | methyladenine glycosylase family protein TERM 1196 789555 - 789511 - T 76 -4.6 -5.39721 | gap 1, opp_overlap 789511 789517 789524, overlap 789513 789516 CTATTATATAAAAAA TACATCTCCAAAAGTTAGA TTTTTAGG TCTAACTTTTGGT-ATGCA TTTCATATTGGCTGT CLD_0095 790011 - 789592 - | hypothetical protein TERM 1197 790304 - 790272 - H 100 -10.7 -4.63044 | opp_overlap 790275, overlap 790275 AGTTATAGAAATAAA GAAGAGTATCTTCAG AAA CAGAAGATACTCTTT TAATACGTTATAAAA TERM 1198 790301 - 790275 - H 100 -12.4 -4.41158 | opp_overlap 790275, overlap 790272 TATAGAAATAAAGAA GAGTATCTTCAG AAA CAGAAGATACTC TTTTAATACGTTATA TERM 1199 790275 - 790301 + H 100 -12.4 -4.32049 | opp_overlap 790272 790275 TATAGAAATAAAGAA GAGTATCTTCAG AAA CAGAAGATACTC TTTTAATACGTTATA CLD_0094 790431 - 790898 + | hypothetical protein CLD_0093 790905 - 792248 + | hypothetical protein TERM 1200 792399 - 792416 + F 70 -7.7 -3.35849 | opp_overlap 792398 792396, overlap 792396 TAGTACAAAATGGAG CACCAGT TTTG GCTGGTG TCTTAATTTACTCAA CLD_0092 792517 - 793503 + | metallo-beta-lactamase family protein TERM 1201 793727 - 793749 + G 100 -15 -5.32944 | opp_overlap 793727 TAATATATATAGAAA GCCACATAGA TAA TCTATGTGGC TTTTTTGATTCTCAG TERM 1202 793749 - 793727 - g 100 -15 -4.2109 | opp_overlap 793727 TAATATATATAGAAA GCCACATAGA TAA TCTATGTGGC TTTTTTGATTCTCAG CLD_0091 793654 - 793788 + | hypothetical protein TERM 1203 793792 - 793810 + F 100 -8.9 -5.64274 | opp_overlap 793791 793792 TGTATTTTCTAAAAG CCACATG GGTAA CATGTGG TTTTTTTGTACCTAA TERM 1204 793810 - 793792 - f 74 -8.9 -3.05597 | opp_overlap 793792, overlap 793791 TGTATTTTCTAAAAG CCACATG GGTAA CATGTGG TTTTTTTGTACCTAA TERM 1205 794011 - 794001 - g 80 -6.8 -4.73613 | opp_overlap 794000 GTATTATTAACAAAA GGAG TGT CTCC AATTACTGCTAGCAT CLD_0090 793845 - 794714 + | ABC transporter, permease protein CLD_0089 794701 - 795456 + | ABC transporter, ATP-binding protein CLD_0088 795487 - 796458 + | putative ABC transporter, substrate-binding protein TERM 1206 796639 - 796676 + F 79 -7.4 -4.61868 | gap 1, opp_overlap 796639 796642, overlap 796642 AAGTATTAATATAAA GAGGATGTTTTAAAATA AAATC TATTTTGAAACATC-TC TTTTATATATACATC TERM 1207 796676 - 796639 - f 70 -5.9 -4.25347 | gap 1, opp_overlap 796639 796642, overlap 796642 AAGTATTAATATAAA GAGGATGTTTTAAAATAA AAT CTATTTTGAAACATC-TC TTTTATATATACATC TERM 1208 796674 - 796642 - f 73 -8.7 -2.82253 | opp_overlap 796639 796642, overlap 796639 TATTAATATAAAGAG GATGTTTTAAAATAA AAT CTATTTTGAAACATC TCTTTTATATATACA TERM 1209 796642 - 796674 + F 93 -10.2 -3.91674 | opp_overlap 796642 796639, overlap 796639 TATTAATATAAAGAG GATGTTTTAAAATA AAATC TATTTTGAAACATC TCTTTTATATATACA TERM 1210 796846 - 796812 - f 77 -7.4 -4.54253 | overlap 796816 AAATCATTAAATAAA TTAATACATGTTTTAA TAT TTAAAACATGTACCAT AAAATCAATCCTAAG TERM 1211 796842 - 796816 - f 95 -12.6 -3.77491 | overlap 796812 CATTAAATAAATTAA TACATGTTTTAA TAT TTAAAACATGTA CCATAAAATCAATCC TERM 1212 797037 - 797025 - g 71 -7.7 -3.3878 | overlap 797024 AGATATGCCAAAAAT CTCAG CGG CTGAG TGGGAAGTAATGAAA blaI 797005 - 797385 + | penicillinase repressor TERM 1213 798008 - 797981 - g 80 -8.6 -3.86874 | opp_overlap 797981, overlap 797977 GCAAAAAGAAATTAA GCATAAACAGAA ATAT TCCTATTTATGC TTGTGATGACTTTAA CLD_0086 797425 - 799623 + | M56 family peptidase TERM 1214 799690 - 799637 - f 82 -9.9 -3.07629 | opp_overlap 799641 799646, overlap 799646 AGAGTAAATTATATA TTAAAAAAAGGGCATCGATATAGTA AGAT TACTATACTGATGTCCTTTTCTAAA TTATTTAAAATATAG TERM 1215 799641 - 799686 + F 81 -10.7 -2.71369 | opp_overlap 799637 799646, overlap 799646 TAAATTATATATTAA AAAAAGGGCATCGATATAGTA AGAT TACTATACTGATGTCCTTTTC TAAATTATTTAAAAT TERM 1216 799646 - 799681 + F 100 -10.6 -4.51847 | opp_overlap 799637 799646, overlap 799641 TATATATTAAAAAAA GGGCATCGATATAGTA AGAT TACTATACTGATGTCC TTTTCTAAATTATTT TERM 1217 799681 - 799646 - f 100 -8.4 -5.60864 | opp_overlap 799646 799641, overlap 799637 TATATATTAAAAAAA GGGCATCGATATAGTA AGAT TACTATACTGATGTCC TTTTCTAAATTATTT TERM 1218 800006 - 800019 + G 72 -5.3 -4.73635 | AAAAGTAGAGTTTGT TCCAA AGCC TTGGA TTTTATTAGGTTGTG TERM 1219 800157 - 800169 + G 76 -6.3 -4.52589 | ATTGGGGAGCATCCT GCTTA TTC TAAGC TTTTATATAGCAAAA CLD_0085 799881 - 800558 + | serine/threonine protein kinase TERM 1220 800609 - 800588 - f 75 -7.3 -4.25458 | opp_overlap 800588 AACTTCACCAATAAA TCCACGATA ATTT TGTCGTGGA TTTTTAGTTTAAGAA TERM 1221 800588 - 800609 + F 100 -9.5 -4.98531 | opp_overlap 800588 AACTTCACCAATAAA TCCACGATA ATTT TGTCGTGGA TTTTTAGTTTAAGAA TERM 1222 801500 - 801489 - g 71 -3 -5.25906 | ATAAATTAATAAAAA CTTT TCCT AAAG TAAAAACAATAATGC TERM 1223 801592 - 801565 - g 72 -2.8 -5.43487 | AAATGAGATAAAAAA TAATACTACTAT AGAC AAAGAAGTATTA AAAGAATTTCATGAT CLD_0084 800867 - 801805 + | dihydrouridine synthase family protein greA 801962 - 802426 + | transcription elongation factor GreA TERM 1224 802551 - 802494 - f 84 -9.6 -3.75532 | gap 1, opp_overlap 802499 802503 802544, overlap 802495 802499 802539 CAATAACAAATAATA TCAAATAGAGGGATTGTTCTTAGATTT AAATA AAAT-TAAGAACAGTCCCTTTATTTGG GAATAATATATAAAG TERM 1225 802550 - 802495 - f 93 -13.1 -2.83692 | gap 1, opp_overlap 802499 802503 802544, overlap 802494 802499 802539 AATAACAAATAATAT CAAATAGAGGGATTGTTCTTAGATTT AAATA AAAT-TAAGAACAGTCCCTTTATTTG GGAATAATATATAAA TERM 1226 802499 - 802546 + F 100 -13.8 -3.5882 | opp_overlap 802495 802494 802499 802539, overlap 802503 802544 ACAAATAATATCAAA TAGAGGGATTGTTCTTAGATTT AAAT AAAATTAAGAACAGTCCCTTTA TTTGGGAATAATATA TERM 1227 802546 - 802499 - f 79 -8.1 -4.05319 | gap 1, opp_overlap 802499 802503 802544, overlap 802495 802494 802539 ACAAATAATATCAAA TAGAGGGATTGTTCTTAGATTT AAATA AAAT-TAAGAACAGTCCCTTTA TTTGGGAATAATATA TERM 1228 802503 - 802542 + F 100 -12.4 -4.42806 | opp_overlap 802499 802495 802494 802539, overlap 802499 ATAATATCAAATAGA GGGATTGTTCTTAGATTT AAAT AAAATTAAGAACAGTCCC TTTATTTGGGAATAA CLD_0082 802593 - 803345 + | hypothetical protein TERM 1229 803475 - 803458 - f 79 -4.1 -5.80817 | overlap 803459 TTTAATATAAAAAAA TTCTGTG TAAT CACAGAT AAAGTCTTGGAGAAA TERM 1230 803474 - 803459 - f 77 -7.6 -4.06863 | overlap 803458 TTAATATAAAAAAAT TCTGTG TAAT CACAGA TAAAGTCTTGGAGAA TERM 1231 803497 - 803480 - f 71 -8.5 -3.09727 | opp_overlap 803480, overlap 803479 TAATCACAGATAAAG TCTTGGA GAAA TCCAAGA TTTTTTGCATTATAA TERM 1232 803480 - 803497 + F 95 -8.5 -5.1925 | opp_overlap 803480 803479 TAATCACAGATAAAG TCTTGGA GAAA TCCAAGA TTTTTTGCATTATAA TERM 1233 803728 - 803767 + F 72 -5.2 -5.00616 | gap 1, opp_overlap 803730, overlap 803730 803766 AACTTAGGTTATAAT AAGCTCAATCATT-AAGAG TTT TTCATAAATGATTGAGCTA TTTTTTAAAAGAAAA TERM 1234 803730 - 803765 + F 77 -7.8 -4.13561 | gap 1, opp_overlap 803730, overlap 803728 CTTAGGTTATAATAA GCTCAATCATT-AAGAG TTT TTCATAAATGATTGAGC TATTTTTTAAAAGAA TERM 1235 803765 - 803730 - f 70 -7.1 -3.80733 | gap 1, opp_overlap 803728 803730 CTTAGGTTATAATAA GCTCAATCATT-AAGA GTTTT TCATAAATGATTGAGC TATTTTTTAAAAGAA TERM 1236 804171 - 804191 + G 74 -8.3 -3.64541 | overlap 804170 804172 TACATTTTGAACTTG TTCTAGGAC AAA GTCCTAGAC TCTTTGATTTGCTAC TERM 1237 804172 - 804190 + G 89 -11.8 -2.78002 | overlap 804171 804170 ACATTTTGAACTTGT TCTAGGAC AAA GTCCTAGA CTCTTTGATTTGCTA CLD_0081 803834 - 804655 + | AraC family transcriptional regulator TERM 1238 804733 - 804775 + F 100 -10.2 -5.27477 | opp_overlap 804733 804737 TTTAAATAGATGAAA GAAAGTTTTTAGATTCTTAT TTT ATAAGAATTTAAGAGCTCTC TTTTTTGCTTAAACT CLD_0080 805192 - 806181 + | putative ferrichrome ABC transporter, ferrichrome-binding protein TERM 1239 806424 - 806440 + G 83 -7.9 -4.67692 | opp_overlap 806417, overlap 806397 806418 806436 GAGAATATCCCCTTA GCTTCCC TAT GGGATGC TTTATTTCATTTTAA TERM 1240 806697 - 806713 + G 70 -8.7 -2.64962 | overlap 806696 TTCTCCTTTTTAGGA GCAGCTT TTG GAGCTGC ATTAGTTAATGGTAT fhuB 806277 - 807317 + | ferrichrome ABC transporter, permease protein FhuB TERM 1241 807754 - 807764 + G 76 -2.6 -5.55769 | AGGCATTACAGCCGT TATA GTC TATA TTTTTTCTTATAAAC fhuG 807317 - 808357 + | ferrichrome ABC transporter, permease protein FhuG TERM 1242 809253 - 809270 + G 80 -9.9 -3.29324 | opp_overlap 809252 809251 CAATGTTGTACAATC GTCATGG TACT CCATGAC TTAAATTTAGCTGCA fhuC 808674 - 809459 + | ferrichrome ABC transporter, ATP-binding protein nifH 809489 - 810238 + | nitrogenase iron protein TERM 1243 810315 - 810288 - g 89 -9.2 -4.21607 | opp_overlap 810287, overlap 810265 TTCAGTTAAGACAAA TGCCGGAGTAAA GTTT TTGACTCCAGCA GCTTTCCCAGGAAAT CLD_0075 810241 - 811509 + | hypothetical protein TERM 1244 811960 - 811975 + G 72 -7.6 -3.57615 | overlap 811952 TATCGTGGTGTTGAG GAAGCA CTTT TGCTTC TTTCAAAAATGTTAC CLD_0074 811549 - 812787 + | hypothetical protein TERM 1245 812877 - 812900 + F 100 -9.7 -5.06505 | opp_overlap 812874 812877 TTAATTGAAATATTA GGACTTACT TTAAAT AGTAAGTCC TTTTTATGTGTAATT TERM 1246 812900 - 812877 - f 76 -9.7 -2.87581 | opp_overlap 812877, overlap 812874 TTAATTGAAATATTA GGACTTACT TTAAAT AGTAAGTCC TTTTTATGTGTAATT CLD_0073 813261 - 815273 + | methyl-accepting chemotaxis protein CLD_0072 815334 - 815498 + | hypothetical protein TERM 1247 815516 - 815554 + T 73 -7.7 -3.65696 | gap 1, opp_overlap 815521, overlap 815521 AGCAAAAAATAAAAT AAAAACAGTGCCA-GATT ATGT AATTATGGCACTGTTTTA TTAATTTATATAACT TERM 1248 815521 - 815549 + T 86 -7.6 -4.87052 | gap 1, opp_overlap 815521, overlap 815516 AAAATAAAATAAAAA CAGTGCCA-GATT ATGT AATTATGGCACTG TTTTATTAATTTATA TERM 1249 815549 - 815521 - T 87 -6 -5.70761 | opp_overlap 815521 815516 AAAATAAAATAAAAA CAGTGCCAGATT ATGTA ATTATGGCACTG TTTTATTAATTTATA CLD_0071 816978 - 815569 - | hypothetical protein TERM 1250 816426 - 816416 - G 72 -5.4 -4.68724 | overlap 816420 816421 GCAGGGAACACAAAA CCAA GGG TTGG AGTATTCACCACCCA gcvT 817557 - 818669 + | glycine cleavage system T protein gcvH 818935 - 819327 + | glycine cleavage system H protein TERM 1251 820518 - 820504 - g 77 -7.2 -4.22407 | opp_overlap 820497 820504, overlap 820497 TAGTAAAAGGAGAAA TTTCAC CTT GTGAAA TTAATGATAAATTAT gcvPA 819330 - 820670 + | glycine cleavage system P protein, subunit 1 TERM 1252 821190 - 821222 + G 75 -9.9 -2.53271 | opp_overlap 821194, overlap 821189 821188 821194 ATTCAGCACATGGTA CAAATCCTGCTAGTG CAT CAGTGGCCGGATTTG ATATTGTAGAAATAA TERM 1253 822020 - 822006 - g 82 -4.3 -5.52986 | overlap 822009 ATGCTATGAAAAAAA TAGCT GTAGA AGCTA AAGAAAATCCAGAAC gcvPB 820670 - 822124 + | glycine cleavage system P protein, subunit 2 TERM 1254 822238 - 822186 - f 78 -7.8 -4.21994 | gap 1, opp_overlap 822187 822188 822190 822198, overlap 822188 822191 AAATATAGATATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGAGACATA TERM 1255 822237 - 822188 - f 95 -11.5 -3.68786 | opp_overlap 822187 822188 822190 822198, overlap 822186 822191 ATATAGATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGAGACAT TERM 1256 822188 - 822237 + F 85 -11.5 -2.57211 | opp_overlap 822188 822186 822191, overlap 822187 822190 822198 ATATAGATATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGAGACAT TERM 1257 822234 - 822191 - f 86 -11.8 -2.63566 | opp_overlap 822190 822188 822187 822198, overlap 822188 822186 TAGATATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAA ATCGTTATCCAGAGA CLD_0066 822449 - 823837 + | glycine cleavage system, dihydrolipoamide dehydrogenase TERM 1258 823847 - 823835 - f 77 -3.5 -5.73978 | opp_overlap 823828, overlap 823828 AGTATAAACAAAAAA TAAAA TAT TTTTA GTTGTTAATTTTAAA CLD_0065 824031 - 825008 + | putative lipoate-protein ligase A TERM 1259 825029 - 825078 + F 83 -6.9 -5.22943 | gap 1, opp_overlap 825029 TAAAAAGGTATAAAA GAATCTATTTTTGAAGTGGTTAAC GCT GTTAAATACTT-AAAAATATATTC TTTTTTACATTTAAT TERM 1260 825236 - 825208 - f 85 -10.3 -3.05384 | opp_overlap 825209 825230 GCCTCCTCCATTGAA GCCCTCGACTAAT TTG ATTAGTCGGGGGT TTTTCCCGTTTTGTA TERM 1261 825209 - 825235 + F 100 -16 -4.75063 | opp_overlap 825208, overlap 825230 CCTCCTCCATTGAAG CCCTCGACTAAT TTG ATTAGTCGGGGG TTTTTCCCGTTTTGT CLD_0064 825368 - 825541 + | glycosyltransferase CLD_0063 825602 - 826144 + | hypothetical protein CLD_0062 826265 - 826393 + | hypothetical protein CLD_0061 826436 - 827035 + | transcriptional regulator CLD_0060 827098 - 827412 + | restriction modification system DNA specificity subunit TERM 1262 827446 - 827423 - f 86 -9.6 -4.01737 | opp_overlap 827429, overlap 827425 ATTAATAATATTAAA GAGCCAGGAA TAAG TTCCTGGCTT AACCTATTATAAAAG TERM 1263 827444 - 827425 - f 95 -12.2 -3.58878 | opp_overlap 827429, overlap 827423 TAATAATATTAAAGA GCCAGGAA TAAG TTCCTGGC TTAACCTATTATAAA CLD_0059 827633 - 827977 + | hypothetical protein TERM 1264 828035 - 828054 + F 73 -6.6 -4.2679 | opp_overlap 828035 828039, overlap 828039 CCCGGGGAATGTAAA TAAATTGT AAAT ACAATTTA TTTTGCTAGAACTTG TERM 1265 828767 - 828753 - g 72 -8.6 -2.89564 | overlap 828755 CTCTTACCGTATATA TACGCA GAC TGCGTA CAAAAATCGAAGATA CLD_0058 828164 - 828862 + | DNA-binding response regulator CLD_0057 828859 - 829896 + | sensor histidine kinase CLD_0056 829969 - 830652 + | ABC transporter, ATP-binding protein TERM 1266 831302 - 831290 - g 78 -3.4 -5.63645 | opp_overlap 831290 GGAAAACACAAAAAA TGCA ACCCA TGCA TTGAATGCCAGTTTT CLD_0055 830649 - 832451 + | ABC transporter, permease protein TERM 1267 832547 - 832535 - f 95 -5.5 -6.09196 | opp_overlap 832505 832502 GGCAAAAGAAAAAAA GCCGT CGT ACAGC AGACATATCTTCATA TERM 1268 833040 - 833012 - f 100 -14.1 -4.21319 | opp_overlap 833002 833015, overlap 833015 ACGAAGTTCAATAAA GAACTTTTCCTCA AGT TGAGAAAAAGTTC TTAGAGGAAAATCAG TERM 1269 833037 - 833015 - f 95 -10 -4.2204 | opp_overlap 833015, overlap 833012 AAGTTCAATAAAGAA CTTTTCCTCA AGT TGAGAAAAAG TTCTTAGAGGAAAAT TERM 1270 833015 - 833037 + F 72 -7.8 -3.61517 | opp_overlap 833015 833012 AAGTTCAATAAAGAA CTTTTCCTCA AGT TGAGAAAAAG TTCTTAGAGGAAAAT CLD_0054 833207 - 833695 + | MarR family transcriptional regulator CLD_0053 833927 - 834514 + | putative NADPH-dependent FMN reductase TERM 1271 834814 - 834797 - f 73 -7.1 -4.0641 | TTTTATGGACATAAA GTAACTT CCAC AAGTTAC TAGAAATCACTGCTC TERM 1272 834958 - 834986 + G 100 -8.2 -6.17669 | opp_overlap 834957 ATAAATAATAATGAG GGAGAATCTCCA GATTA TGGGGGTTCTTC TTTTTTTATTTTGTT CLD_0052 834877 - 835017 + | hypothetical protein CLD_0051 835072 - 835200 + | hypothetical protein CLD_0050 835210 - 835605 + | hypothetical protein CLD_0049 835844 - 836608 + | MerR family transcriptional regulator CLD_0047 837607 - 838083 + | transposase CLD_0046 838313 - 838738 + | dehydrogenase domain-containing protein CLD_0045 838835 - 838981 + | hypothetical protein CLD_0044 839068 - 840762 + | 67 kDa myosin-cross-reactive antigen family protein CLD_0043 841304 - 840903 - | ABC transporter, ATP-binding protein CLD_0042 841863 - 842414 + | multimeric flavodoxin WrbA family protein TERM 1273 842412 - 842437 + F 80 -8.5 -4.30995 | gap 1, opp_overlap 842417 ACAAACTCTACACTT TAACACCAT-AC TTT GTGATGGTGTTA TTCTTTTATCAAAAG CLD_0041 842466 - 843197 + | ABC transporter ATP-binding protein CLD_0040 843184 - 843927 + | putative drug resistance ABC-2 type transporter, permease protein TERM 1274 844113 - 844085 - T 70 -3.2 -5.39755 | opp_overlap 844087 844095, overlap 844087 TATAAGCATAAAAAA GAGGACTTAC TGTAATAAG GTAAGTCCTT GATACATCTTTAAAG CLD_0039 845268 - 844387 - | EamA family protein CLD_0038 845406 - 845954 + | hypothetical protein TERM 1275 846269 - 846302 + F 81 -9.1 -3.84852 | opp_overlap 846269 846270 846279, overlap 846265 846270 846279 AGTATCACTATGAAA TCTACAAAAATCATA ATAT TATGATTTTCGTAGG TTAATTTTATATTTA TERM 1276 846302 - 846269 - f 79 -9.1 -3.80841 | opp_overlap 846269 846265 846270 846279, overlap 846270 846279 AGTATCACTATGAAA TCTACAAAAATCATA ATAT TATGATTTTCGTAGG TTAATTTTATATTTA TERM 1277 846270 - 846301 + F 82 -10.4 -2.89285 | opp_overlap 846269 846270 846279, overlap 846269 846265 846279 GTATCACTATGAAAT CTACAAAAATCATA ATAT TATGATTTTCGTAG GTTAATTTTATATTT TERM 1278 846301 - 846270 - f 91 -12.6 -2.88023 | opp_overlap 846270 846269 846265 846279, overlap 846269 846279 GTATCACTATGAAAT CTACAAAAATCATA ATAT TATGATTTTCGTAG GTTAATTTTATATTT CLD_0037 847068 - 848033 + | AraC family transcriptional regulator CLD_0036 848119 - 848379 + | tfoX domain-containing protein TERM 1279 848465 - 848417 - T 83 -11.4 -2.67973 | gap 1, opp_overlap 848421, overlap 848408 ATACAACCTATATTA GGAGGTATGTAGGTAAATTTGTA TTTA CATAAATCTACCTACATAC-TCC GTTCAGAACAAAAAA TERM 1280 848421 - 848462 + T 82 -11.2 -2.52464 | opp_overlap 848417 AACCTATATTAGGAG GTATGTAGGTAAATTTGT ATTTAC ATAAATCTACCTACATAC TCCGTTCAGAACAAA CLD_0035 849506 - 848508 - | 3-oxoacyl-[acyl-carrier-protein] synthase III-like protein TERM 1281 849458 - 849445 - G 70 -3.9 -5.03747 | AAATGTTTCAAAAAA TATTC ATTA GAATA GCTTGTTTTAGGATG CLD_0034 849669 - 851135 + | methyl-accepting chemotaxis protein TERM 1282 851153 - 851182 + F 100 -9.4 -5.37043 | opp_overlap 851153 TAGATAATATAAAAA GATGGTTATTGC AAATTA GCAGTGACCATC TTTTTTGTATAGCAT TERM 1283 851182 - 851153 - f 74 -5 -5.1764 | opp_overlap 851153 TAGATAATATAAAAA GATGGTTATTGC AAATTA GCAGTGACCATC TTTTTTGTATAGCAT CLD_0033 851693 - 851983 + | hypothetical protein TERM 1284 851986 - 852033 + F 87 -7.2 -5.19328 | opp_overlap 851991, overlap 851991 AAGTTATGGTTAATA TAAAAGGCATGTTTTTCACATT TATT ACTATGAAAAACATGCCTTAAA TTTTTATTCTAAGCT TERM 1285 851991 - 852028 + F 95 -11.5 -3.53262 | opp_overlap 851991, overlap 851986 ATGGTTAATATAAAA GGCATGTTTTTCACATT TATT ACTATGAAAAACATGCC TTAAATTTTTATTCT TERM 1286 852028 - 851991 - f 100 -13.7 -4.66938 | opp_overlap 851986 851991 ATGGTTAATATAAAA GGCATGTTTTTCACATT TATT ACTATGAAAAACATGCC TTAAATTTTTATTCT CLD_0032 852193 - 853746 + | ABC transporter, ATP-binding protein TERM 1287 853760 - 853789 + G 89 -9.4 -4.21343 | gap 1, opp_overlap 853759 AATATAAAAAGTGAT GAGGAGCTATCCA AGCAA TGGA-GGCTCCTC TTTCTCTATATTGGG CLD_0031 853739 - 853864 + | hypothetical protein TERM 1288 853988 - 854004 + G 73 -9.5 -2.65112 | CATTTTAATGTTTCT CGAAGAA CAA TTCTTCG TGATATAAATACGTT CLD_0030 853895 - 854824 + | putative transcriptional regulator TERM 1289 854833 - 854812 - f 79 -8.8 -3.54622 | opp_overlap 854812 AAAAAATTATGAGAA CAGTGACA TATAGG TGTCACTG TTTTTGTGTTAGAAT TERM 1290 854812 - 854833 + F 100 -9.5 -5.09762 | opp_overlap 854812 AAAAAATTATGAGAA CAGTGACAT ATAG GTGTCACTG TTTTTGTGTTAGAAT CLD_0029 854929 - 855555 + | DJ-1/PfpI family protein TERM 1291 855639 - 855596 - T 95 -5.5 -6.08342 | opp_overlap 855600, overlap 855597 855598 855600 CAATAAATAAAAAAA TTTATGTAGGTAAATTTGT TTTTAC ACAAATTTACCTACATTTT TTATAATGGTTTAAT TERM 1292 855638 - 855597 - T 84 -9 -4.21345 | opp_overlap 855600, overlap 855596 855598 855600 AATAAATAAAAAAAT TTATGTAGGTAAATTTGT TTTTAC ACAAATTTACCTACATTT TTTATAATGGTTTAA TERM 1293 855637 - 855598 - T 90 -12.5 -3.09147 | opp_overlap 855600, overlap 855597 855596 855600 ATAAATAAAAAAATT TATGTAGGTAAATTTGT TTTTAC ACAAATTTACCTACATT TTTTATAATGGTTTA TERM 1294 855600 - 855635 + T 100 -15.1 -5.33785 | opp_overlap 855600 855598 855597 855596 AAATAAAAAAATTTA TGTAGGTAAATTTGT TTTTAC ACAAATTTACCTACA TTTTTTATAATGGTT TERM 1295 855635 - 855600 - T 100 -15.1 -3.06303 | opp_overlap 855600, overlap 855598 855597 855596 AAATAAAAAAATTTA TGTAGGTAAATTTGT TTTTAC ACAAATTTACCTACA TTTTTTATAATGGTT CLD_0028 856626 - 855718 - | cysteine synthase family protein luxS 857062 - 856610 - | autoinducer-2 production protein LuxS metC 858206 - 857064 - | cystathionine beta-lyase TERM 1296 858257 - 858301 + r 100 -13.4 -4.86902 | ATTTCTTACTTGTTT TTTTAGATTGAAATAACT TTATTGTTC AGTTATTTCAATCTAAAA TTTTATTATAATTTA CLD_0025 858933 - 858307 - | hypothetical protein TERM 1297 859110 - 859079 - H 100 -14.6 -5.64873 | opp_overlap 859080, overlap 859080 GCTAATAATAAAAAA GCTTCTGCCTCTAA ATTT TTAGAGGCAGAAGT TAACTTCCGCGGTTC TERM 1298 859109 - 859080 - H 100 -18.1 -3.97297 | opp_overlap 859080, overlap 859079 CTAATAATAAAAAAG CTTCTGCCTCTAA ATTT TTAGAGGCAGAAG TTAACTTCCGCGGTT TERM 1299 859080 - 859109 + H 100 -18.1 -3.17571 | opp_overlap 859080 859079 CTAATAATAAAAAAG CTTCTGCCTCTAA ATTT TTAGAGGCAGAAG TTAACTTCCGCGGTT TERM 1300 859577 - 859563 - H 70 -4.4 -4.94992 | opp_overlap 859563 859563 TGAAAGTTAGAAAAA TAAATA TTT TATTTA ATATAGAAAATAAAA CLD_0024 859849 - 861702 + | glycosy hydrolase family protein TERM 1301 861784 - 861730 - f 78 -6.1 -5.06089 | gap 1, opp_overlap 861736 861741, overlap 861731 861736 861741 AAATTATAAAGAAAA GTAAAATAAAACAGTGCCTATGTATT TTAT AATGC-TAAGCACTGTTTTATTTGAT TAAAAGGATGAAATC TERM 1302 861783 - 861731 - f 83 -9.6 -3.61213 | gap 1, opp_overlap 861736 861741, overlap 861730 861736 861741 AATTATAAAGAAAAG TAAAATAAAACAGTGCCTATGTATT TTAT AATGC-TAAGCACTGTTTTATTTGA TTAAAAGGATGAAAT TERM 1303 861736 - 861778 + F 86 -9.5 -3.90291 | gap 1, opp_overlap 861731 861730 861736 861741, overlap 861741 TAAAGAAAAGTAAAA TAAAACAGTGCCTATGTATT TTAT AATGC-TAAGCACTGTTTTA TTTGATTAAAAGGAT TERM 1304 861778 - 861736 - f 95 -9.5 -4.81644 | gap 1, opp_overlap 861736 861741, overlap 861731 861730 861741 TAAAGAAAAGTAAAA TAAAACAGTGCCTATGTATT TTAT AATGC-TAAGCACTGTTTTA TTTGATTAAAAGGAT TERM 1305 861741 - 861773 + F 72 -5 -4.99947 | gap 1, opp_overlap 861736 861731 861730 861741, overlap 861736 AAAAGTAAAATAAAA CAGTGCCTATGTATT TTAT AATGC-TAAGCACTG TTTTATTTGATTAAA TERM 1306 861773 - 861741 - f 74 -5 -5.24291 | gap 1, opp_overlap 861741 861736, overlap 861736 861731 861730 AAAAGTAAAATAAAA CAGTGCCTATGTATT TTAT AATGC-TAAGCACTG TTTTATTTGATTAAA CLD_0023 861953 - 862726 + | SAM-dependent methyltransferase CLD_0022 862760 - 863194 + | radical SAM domain-containing protein CLD_0021 863445 - 864068 + | chloramphenicol O-acetyltransferase CLD_0020 864406 - 864645 + | mercuric transport protein periplasmic component TERM 1307 864710 - 864665 - T 100 -17.3 -3.60587 | gap 1, opp_overlap 864665 ATAAAATTTATAGAA GTGCACTGAAAATGCTAG-CTA TTT TAATCTAACATTTTCAGTGCAC TTCATTAACACAAAC TERM 1308 864665 - 864710 + T 100 -15 -3.33696 | opp_overlap 864665 ATAAAATTTATAGAA GTGCACTGAAAATGCTAGCT ATTTTA ATCTAACATTTTCAGTGCAC TTCATTAACACAAAC CLD_0019 865085 - 864753 - | hypothetical protein TERM 1309 864960 - 864984 + g 73 -8.9 -3.07192 | opp_overlap 864957 864960, overlap 864957 GCCTTCATAAAATAA TTTATTTAAAA TTA TTTTAAATAAA TCTGTTGAACCAATT TERM 1310 864984 - 864960 - G 84 -8.9 -4.30995 | opp_overlap 864957 864960, overlap 864957 GCCTTCATAAAATAA TTTATTTAAAA TTA TTTTAAATAAA TCTGTTGAACCAATT CLD_0018 865673 - 865173 - | hypothetical protein TERM 1311 866101 - 866075 - R 95 -7.4 -5.82281 | opp_overlap 866075 AAAGATATAAAAAAA GATACCTGTG TGAAAAT CACAAGTATC TTTTTTTGGTATTAA TERM 1312 866075 - 866101 + r 84 -5.2 -5.63374 | opp_overlap 866075 AAAGATATAAAAAAA GATACCTGTG TGAAAAT CACAAGTATC TTTTTTTGGTATTAA CLD_0017 866814 - 866206 - | hypothetical protein CLD_0016 867329 - 866907 - | putative DNA-binding protein CLD_0015 867473 - 867712 + | DNA-binding protein TERM 1313 868912 - 868898 - g 70 -5 -4.68545 | ATTGAAGATATAAAA TCTTAC AAA GCAAGA TGGAAAGAAAAAAAG CLD_0014 867899 - 869038 + | replication protein TERM 1314 869129 - 869145 + F 80 -6.7 -5.03227 | opp_overlap 869131 AATTATTAGGCTTAA GATTATA GAA TATAATC TTTTCTTTGTACTCT CLD_0013 869205 - 869597 + | sigma-70 family RNA polymerase sigma factor CLD_0012 869837 - 870193 + | hypothetical protein CLD_0011 870336 - 870515 + | hypothetical protein TERM 1315 870524 - 870492 - f 81 -7.2 -4.79826 | gap 1, opp_overlap 870493 870494, overlap 870494 870512 ATAGAGCACCAAAAA GATGAGTATTTCACT AGAA AGTGAGATACTCA-C TTTTTTATCAGCTAA TERM 1316 870493 - 870524 + F 100 -9.6 -5.26316 | opp_overlap 870492 870494 870512, overlap 870494 TAGAGCACCAAAAAG ATGAGTATTTCACT AGAA AGTGAGATACTCAC TTTTTTATCAGCTAA TERM 1317 870494 - 870523 + F 100 -13.1 -3.75067 | opp_overlap 870494 870492 870512, overlap 870493 AGAGCACCAAAAAGA TGAGTATTTCACT AGAA AGTGAGATACTCA CTTTTTTATCAGCTA TERM 1318 870523 - 870494 - f 100 -10.9 -4.01045 | opp_overlap 870493 870494, overlap 870492 870512 AGAGCACCAAAAAGA TGAGTATTTCACT AGAA AGTGAGATACTCA CTTTTTTATCAGCTA TERM 1319 870524 - 870512 - f 75 -7.7 -3.9712 | opp_overlap 870494 870493, overlap 870494 870492 GTATTTCACTAGAAA GTGAG ATA CTCAC TTTTTTATCAGCTAA TERM 1320 870727 - 870698 - g 70 -6.1 -4.16904 | gap 1, opp_overlap 870698 870722 AATACTATAGATAAA CATAAAATAT-TAT TTG ATAGATATTTTATG TTAAATTATGAAAAA CLD_0010 870629 - 870796 + | hypothetical protein CLD_0009 870978 - 871607 + | hypothetical protein TERM 1321 871672 - 871638 - f 100 -8.7 -5.38326 | opp_overlap 871638 TTAATGAAACAAAAA GGTCACATATTGG GTTAAGATT CCAAAATGTGACC TTTTTTTGTATTTAG TERM 1322 871638 - 871672 + F 100 -10.8 -5.88197 | opp_overlap 871638 TTAATGAAACAAAAA GGTCACATATTGGGTT AAG ATTCCAAAATGTGACC TTTTTTTGTATTTAG TERM 1323 871747 - 871793 + F 73 -8.9 -2.82623 | gap 1, opp_overlap 871747 871748, overlap 871743 GATTACATAAACAGA GTTCTT-GGCTTTAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGGAAA TGGTTATCCAGGGAC TERM 1324 871791 - 871748 - f 75 -9.6 -2.62896 | opp_overlap 871747 871743, overlap 871747 ATTACATAAACAGAG TTCTTGGCTTTAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGGA AATGGTTATCCAGGG TERM 1325 872005 - 871993 - g 72 -4.9 -4.90266 | overlap 871987 GGCAGTAAGTAAAAA TCTTT TAG AAAGA AATCTAGCTCTAGAA CLD_0008 871976 - 872197 + | hypothetical protein CLD_0007 872217 - 872444 + | hypothetical protein TERM 1326 872479 - 872445 - T 100 -11.6 -4.1391 | opp_overlap 872453, overlap 872453 AAAATAGAAGAATAA TTTAAAAAGCTCTCAC ATT GTGAGGGCTTTTTATA ACTGAATTTTTAAGA TERM 1327 872471 - 872453 - T 93 -8.8 -4.82333 | opp_overlap 872453, overlap 872445 AGAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT TERM 1328 872453 - 872471 + T 100 -11 -4.88067 | opp_overlap 872453 872445 AGAATAATTTAAAAA GCTCTCAC ATT GTGAGGGC TTTTTATAACTGAAT CLD_0006 873647 - 872670 - | LysM domain-containing protein TERM 1329 873621 - 873595 - G 77 -8.8 -3.65828 | overlap 873596 873610 ATATAAATTCCGAAA CGATGCGCTATA GTA TATAGCGTATCA CCATATTGAACTTTA TERM 1330 873620 - 873596 - G 76 -10.1 -2.78774 | overlap 873595 873610 TATAAATTCCGAAAC GATGCGCTATA GTA TATAGCGTATC ACCATATTGAACTTT CLD_0005 873853 - 874557 + | N-acetylmuramoyl-L-alanine amidase TERM 1331 874580 - 874636 + F 79 -8.2 -4.10179 | opp_overlap 874583 874587, overlap 874569 874582 874583 GCTATTTAATATTTA AAATTTAGCCCCTATCTTAAGCAGTG ATATA CAATACTTAAGATAGGGGTTGAAATA TTTGTATAAATTGTA TERM 1332 874582 - 874634 + F 91 -10.8 -3.63761 | opp_overlap 874583 874587, overlap 874580 874583 TATTTAATATTTAAA ATTTAGCCCCTATCTTAAGCAGTG ATATA CAATACTTAAGATAGGGGTTGAAA TATTTGTATAAATTG TERM 1333 874633 - 874583 - f 100 -12.1 -4.28656 | opp_overlap 874582 874580 874583, overlap 874587 ATTTAATATTTAAAA TTTAGCCCCTATCTTAAGCAGTG ATATA CAATACTTAAGATAGGGGTTGAA ATATTTGTATAAATT TERM 1334 874583 - 874633 + F 100 -14.3 -2.77534 | opp_overlap 874583 874587, overlap 874582 874580 ATTTAATATTTAAAA TTTAGCCCCTATCTTAAGCAGTG ATATA CAATACTTAAGATAGGGGTTGAA ATATTTGTATAAATT TERM 1335 874629 - 874587 - f 91 -12.9 -2.77519 | opp_overlap 874583 874582 874580, overlap 874583 AATATTTAAAATTTA GCCCCTATCTTAAGCAGTG ATATA CAATACTTAAGATAGGGGT TGAAATATTTGTATA CLD_0004 874920 - 876236 + | hypothetical protein CLD_0003 876396 - 877541 + | hypothetical protein TERM 1336 877815 - 877836 + F 76 -5.9 -4.90778 | opp_overlap 877815 TGTCTATTCTTTAAA GAGACAC GATATTAG GTGTCTC TTTTGTTTAGCTAAA CLD_0002 878413 - 878586 + | putative prophage head protein CLD_0001 878726 - 879373 + | hypothetical protein TERM 1337 879474 - 879503 + F 80 -8.1 -4.36914 | opp_overlap 879479 879483, overlap 879475 879483 GAATCCCCGGGGTAT GTAAACAAATTGT AAAT ACAATTTGTTTAA TTTTATACAACAAGA TERM 1338 879475 - 879502 + F 93 -11.6 -3.21934 | opp_overlap 879479 879483, overlap 879474 879483 AATCCCCGGGGTATG TAAACAAATTGT AAAT ACAATTTGTTTA ATTTTATACAACAAG TERM 1339 879498 - 879479 - f 72 -8 -3.64703 | opp_overlap 879475 879474 879483, overlap 879483 CCCGGGGTATGTAAA CAAATTGT AAAT ACAATTTG TTTAATTTTATACAA CLD_3804 879496 - 879624 + | hypothetical protein TERM 1340 880078 - 880039 - T 73 -3.2 -5.50499 | gap 1, opp_overlap 880044, overlap 880027 880044 GTATATTTAAAAAAA TAAGAG-TCAATACTTA AGATATG TAATTATTGACCTCTTA ATATCTCAAAGGCAG TERM 1341 880089 - 880118 + T 100 -17.3 -4.40221 | opp_overlap 880089 TCTTAATATCTCAAA GGCAGTCTATGGA AAAA TCCGTAGACTGCC TTTTAAGTTTAATTT TERM 1342 880118 - 880089 - T 100 -15.1 -3.66803 | opp_overlap 880089 TCTTAATATCTCAAA GGCAGTCTATGGA AAAA TCCGTAGACTGCC TTTTAAGTTTAATTT CLD_3803 880533 - 880177 - | hypothetical protein arsC 880980 - 881219 + | arsenate reductase ArsC TERM 1343 881457 - 881494 + F 86 -9.5 -3.95022 | opp_overlap 881441 881457 ATATTATTTGCACAA TATACTTATATATAGAC AAAT GTTTATATGTAGGTATA TTTAGTGTTGATAAA CLD_3801 881585 - 881902 + | arsenical resistance operon repressor CLD_3800 882046 - 882699 + | UbiE/COQ5 family methlytransferase TERM 1344 882912 - 882965 + F 90 -10.9 -3.26262 | gap 1, opp_overlap 882912 882914 882916 882921, overlap 882922 TAAATTTTATAAAAA TGTATAAAGGCCATCTATAAATAATT ATG AATTATT-ATAGATGGTTTTTATAGA GTTTTATAGAGTTTG TERM 1345 882965 - 882912 - f 78 -6.5 -4.89393 | gap 1, opp_overlap 882912 882922, overlap 882914 882916 882921 TAAATTTTATAAAAA TGTATAAAGGCCATCTATAAATAATT ATG AATTATT-ATAGATGGTTTTTATAGA GTTTTATAGAGTTTG TERM 1346 882963 - 882914 - f 72 -9.1 -2.70446 | gap 1, opp_overlap 882912 882922, overlap 882912 882916 882921 AATTTTATAAAAATG TATAAAGGCCATCTATAAATAATT ATG AATTATT-ATAGATGGTTTTTATA GAGTTTTATAGAGTT TERM 1347 882922 - 882955 + F 100 -10.7 -4.90296 | gap 1, opp_overlap 882921 882916 882914 882912, overlap 882912 AAAAATGTATAAAGG CCATCTATAAATAATT ATG AATTATT-ATAGATGG TTTTTATAGAGTTTT CLD_3799 883034 - 883969 + | ABC transporter, ATP-binding protein CLD_3798 883962 - 885098 + | hypothetical protein TERM 1348 885120 - 885143 + F 100 -10.4 -5.65177 | opp_overlap 885120 885122 ATAAAGTTAGATATA CACTAGGTAC AAAA GTATCTAGTG TTTTTTTATAGATGT TERM 1349 885143 - 885120 - f 71 -8.2 -3.04598 | opp_overlap 885120, overlap 885122 ATAAAGTTAGATATA CACTAGGTAC AAAA GTATCTAGTG TTTTTTTATAGATGT TERM 1350 885266 - 885284 + F 95 -9.6 -4.84761 | opp_overlap 885265 885266 AGGATAATTTAAAAG GTTCTCAC ATT GTGAGAGC TTTTTATCAGGATAT CLD_3797 885554 - 886015 + | hypothetical protein thyA 886005 - 886979 + | thymidylate synthase CLD_3795 886991 - 887749 + | UbiE/COQ5 family methlytransferase TERM 1351 888762 - 888749 - g 74 -2.4 -5.50774 | opp_overlap 888749 TATAAGAAAGAAAAA GCAA TTGAGC TTGC TAATATTATTACAGA CLD_3794 887795 - 889009 + | putative thiaminase I TERM 1352 889039 - 889062 + F 93 -9 -4.82901 | opp_overlap 889039 ATCATTGAAATTAAA GGTACTTTTA TTAT TAAAAGTGCC TTTTTGTAGAAGGGA TERM 1353 889062 - 889039 - f 71 -6.8 -4.08887 | opp_overlap 889039 ATCATTGAAATTAAA GGTACTTTTA TTAT TAAAAGTGCC TTTTTGTAGAAGGGA thiD 889087 - 889914 + | phosphomethylpyrimidine kinase CLD_3792 890092 - 890322 + | hypothetical protein TERM 1354 890430 - 890376 - T 93 -9.9 -3.85698 | gap 1, opp_overlap 890381 890428, overlap 890381 GTTTTGTCTTATAAA TAAAATCTAGTGAAAATTT-TAATTT ATAT AAATAAGAAATTTTCACTAGATTTTT ATGTTAAATATTAAT TERM 1355 890381 - 890425 + T 100 -9.8 -5.10767 | gap 1, opp_overlap 890376 890381 GTCTTATAAATAAAA TCTAGTGAAAATTT-TAATTT ATAT AAATAAGAAATTTTCACTAGA TTTTTATGTTAAATA TERM 1356 890425 - 890381 - T 100 -9.8 -4.99043 | gap 1, opp_overlap 890381, overlap 890376 GTCTTATAAATAAAA TCTAGTGAAAATTT-TAATTT ATAT AAATAAGAAATTTTCACTAGA TTTTTATGTTAAATA CLD_3791 891064 - 890600 - | putative transporter TERM 1357 891346 - 891374 + H 80 -9.7 -3.14218 | opp_overlap 891351 891353, overlap 891351 AATAGTTTAAATAAT AAAAAGTCAGAGA AAT TCTCTGGCTTTTC TAATTTTAATAGCTA TERM 1358 891369 - 891351 - H 90 -7.4 -5.38549 | opp_overlap 891346 891351, overlap 891353 TTTAAATAATAAAAA GTCAGAGA AAT TCTCTGGC TTTTCTAATTTTAAT TERM 1359 891351 - 891369 + H 93 -9.6 -4.68539 | opp_overlap 891351 891353, overlap 891346 TTTAAATAATAAAAA GTCAGAGA AAT TCTCTGGC TTTTCTAATTTTAAT CLD_3790 891677 - 892534 + | AraC family transcriptional regulator TERM 1360 892706 - 892688 - f 70 -7.6 -3.38036 | overlap 892686 892691 CCAATTAAATGAATA TAATGATT TGG AATCATTA AAAAAGATAGATGCT TERM 1361 893217 - 893202 - f 74 -6.2 -4.58303 | opp_overlap 893202 GTAAATATGATAAAA CATTCT AAAG AGAATG TTTATATAAGCTTAA CLD_3786 893588 - 893755 + | hypothetical protein TERM 1362 893825 - 893771 - f 100 -16.2 -3.83768 | gap 1, opp_overlap 893771, overlap 893765 AAAACAAGAGGTAAA CTGTACCCTGTAAGATAGACACA GAAAAGATGT TGTGT-TACCTTACAGGGTACAG TTTATCATCAAGACC TERM 1363 893771 - 893825 + F 100 -16.1 -3.96148 | gap 1, opp_overlap 893765 893771 AAAACAAGAGGTAAA CTGTACCCTGTAAGATAGACACAGAA AAGA TGTTGTGT-TACCTTACAGGGTACAG TTTATCATCAAGACC TERM 1364 895399 - 895384 - g 70 -6.2 -4.1043 | GGCAAACAGTATAAA TGCTAT AGTA ATAGCA CAACAACAGGCAGCC CLD_3785 894473 - 895468 + | hypothetical protein CLD_3784 895747 - 896799 + | hypothetical protein TERM 1365 896825 - 896859 + F 95 -12.4 -3.38297 | opp_overlap 896830, overlap 896830 AAATTAGGAAAATGT AAAAAGCATTCAATCT TTG AGATTGAGTGCTTTTG TTAATATATCTTCAT TERM 1366 896854 - 896830 - f 100 -10.1 -4.88222 | opp_overlap 896825 896830 AGGAAAATGTAAAAA GCATTCAATCT TTG AGATTGAGTGC TTTTGTTAATATATC TERM 1367 896830 - 896854 + F 100 -12.3 -4.77079 | opp_overlap 896830, overlap 896825 AGGAAAATGTAAAAA GCATTCAATCT TTG AGATTGAGTGC TTTTGTTAATATATC CLD_3783 896983 - 897675 + | ABC transporter, ATP-binding protein TERM 1368 899713 - 899699 - g 73 -5.8 -4.53602 | overlap 899712 GGGATATTAAACAAA GATATT TTC AATATC AGTGCGGCACATGAT CLD_3782 897662 - 900328 + | putative ABC transporter, permease protein CLD_3781 900836 - 900955 + | hypothetical protein TERM 1369 901077 - 901094 + F 84 -4.9 -5.67063 | opp_overlap 901077 ATATTTGAATAAAAA GAACTTA GAAA TAGGTTC TTTTTTTATACTAAA CLD_3780 901183 - 901896 + | DNA-binding response regulator TERM 1370 902652 - 902638 - g 85 -2.2 -6.12458 | overlap 902640 TAAAAAAAGAAAAAA TATTTT TAA AAAACA TAATATCAGATATTT TERM 1371 902940 - 902928 - g 72 -2.7 -5.34381 | AAAGCTAAAGAAAAA TCACA ACA TGTAA TAGTTGATATAGATG CLD_3779 902049 - 903311 + | sensor histidine kinase CLD_3778 903500 - 904141 + | hypothetical protein TERM 1372 904292 - 904262 - T 79 -9.8 -2.67747 | opp_overlap 904265, overlap 904261 904264 CTCCTAGAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 1373 904265 - 904289 + T 90 -10.1 -3.71552 | opp_overlap 904264 904262 904261 CTAGAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT CLD_3777 904609 - 904412 - | small acid-soluble spore protein, H-type TERM 1374 904814 - 904804 - H 75 -4 -5.45802 | opp_overlap 904804 TCTCTAAAAGAAAAA TCTT TAA AAGA TTTGCGATGTGTTAC TERM 1375 904867 - 904910 + H 83 -3.3 -6.09196 | GAGTTATATTCAAAA CACTTATTTTTCTCTTTAG TGTAAT CTAGTGGAGAAAATAAGTG TTTTTTTATTTTAAA CLD_3776 904939 - 905718 + | hypothetical protein TERM 1376 906187 - 906198 + F 73 -4.4 -5.24551 | overlap 906189 ATCTAAAGGAAAGTG TGTC AATA GACA TTTTTATTGATTTGC CLD_3775 906284 - 907264 + | hypothetical protein hypB 907483 - 908151 + | hydrogenase accessory protein HypB CLD_3773 908189 - 910885 + | pyridine nucleotide-disulphide oxidoreductase family protein CLD_3772 910968 - 911309 + | hydrogenase nickel incorporation protein TERM 1377 911454 - 911400 - f 71 -6.9 -4.07877 | gap 1, opp_overlap 911406, overlap 911403 911404 911406 TCATCGGATAAATAA TAACTAGGGATGTTGTAAAATTAC TTTTTATG GTAATTTTGTAACATCCCTA-TTA AAATTAAACCGTAAC TERM 1378 911452 - 911403 - f 71 -6.7 -4.15703 | opp_overlap 911406, overlap 911400 911404 911406 TCGGATAAATAATAA CTAGGGATGTTGTAAAATTAC TTTTTATG GTAATTTTGTAACATCCCTAT TAAAATTAAACCGTA TERM 1379 911451 - 911404 - f 82 -10.2 -3.08699 | opp_overlap 911406, overlap 911403 911400 911406 CGGATAAATAATAAC TAGGGATGTTGTAAAATTAC TTTTTATG GTAATTTTGTAACATCCCTA TTAAAATTAAACCGT TERM 1380 911449 - 911406 - f 71 -8.4 -3.08962 | opp_overlap 911406, overlap 911404 911403 911400 GATAAATAATAACTA GGGATGTTGTAAAATTAC TTTTTATG GTAATTTTGTAACATCCC TATTAAAATTAAACC TERM 1381 911406 - 911449 + F 95 -13.5 -3.09492 | opp_overlap 911406 911404 911403 911400 GATAAATAATAACTA GGGATGTTGTAAAATTACT TTTTAT GGTAATTTTGTAACATCCC TATTAAAATTAAACC TERM 1382 912218 - 912243 + F 100 -9.8 -5.18371 | opp_overlap 912218 912222 ATTTATACTAGCTAA TCAAGGTGGA AAGAAA TCCGCCTTGA TTTTATTTTATGAAG TERM 1383 912363 - 912325 - f 89 -9.2 -4.28069 | overlap 912326 912345 912347 ACATAATCTAATAAA TTTTTCCTAAATAAAAAA TAC TTATTTATTTAGGAAAAT AAACAGGGGGTTATA TERM 1384 912362 - 912326 - f 95 -12.7 -3.15757 | overlap 912325 912345 912347 CATAATCTAATAAAT TTTTCCTAAATAAAAAA TAC TTATTTATTTAGGAAAA TAAACAGGGGGTTAT dapB 912382 - 913179 + | dihydrodipicolinate reductase TERM 1385 913801 - 913787 - g 93 -8.6 -4.90869 | opp_overlap 913786 913787 913789 ATGATGAATTAAAAA TAGCTG GAG CAGCTA GATTTTGTTGGATGT TERM 1386 913787 - 913801 + G 70 -8.6 -2.64104 | opp_overlap 913787, overlap 913786 913789 ATGATGAATTAAAAA TAGCTG GAG CAGCTA GATTTTGTTGGATGT CLD_3768 913498 - 914337 + | sulfurtransferase family protein CLD_3767 914390 - 914884 + | putative acetyltransferase TERM 1387 916400 - 916355 - g 71 -2 -5.37345 | opp_overlap 916357 916360 916363, overlap 916357 GCCAATGACAAAAAA GAGAATAATCGTAACAATTA TTTTGC TGATTGCTACGATTGTCCTG TGTATAATGTGCTTT CLD_3766 915102 - 916550 + | beta-lactamase CLD_3765 916743 - 917348 + | DNA-binding protein CLD_3764 917591 - 917737 + | hypothetical protein CLD_3763 917853 - 918041 + | hypothetical protein CLD_3762 918093 - 918224 + | hypothetical protein TERM 1388 918455 - 918497 + F 70 -7.3 -3.72228 | opp_overlap 918457 918461, overlap 918457 918461 TTCTAATTCATAGAA AATAAATAAGAGTTCTC AAAATAAAA GGGAACTCTTATTTATG TATTGTTTTAAATTG TERM 1389 918495 - 918457 - f 83 -7.7 -4.57474 | opp_overlap 918457 918455 918461, overlap 918461 CTAATTCATAGAAAA TAAATAAGAGTTCTC AAAATAAAA GGGAACTCTTATTTA TGTATTGTTTTAAAT TERM 1390 918457 - 918495 + F 87 -9.9 -3.424 | opp_overlap 918457 918461, overlap 918455 918461 CTAATTCATAGAAAA TAAATAAGAGTTCTC AAAATAAAA GGGAACTCTTATTTA TGTATTGTTTTAAAT TERM 1391 918461 - 918491 + F 70 -6.3 -4.31833 | opp_overlap 918461 918457, overlap 918457 918455 TTCATAGAAAATAAA TAAGAGTTCTC AAAATAAAA GGGAACTCTTA TTTATGTATTGTTTT TERM 1392 918784 - 918770 - g 72 -4.4 -5.04082 | GAAATAATAAGAAAA TTTAAT TTA ATTAAA AAAATAAAAGAAAAT TERM 1393 918981 - 918971 - g 72 -4 -5.09259 | GACTTTAAAATAAAA TCTA CAG TAGA ATCACAGGAACTTAT CLD_3761 918572 - 919978 + | hypothetical protein TERM 1394 920139 - 920122 - f 86 -4.3 -5.95286 | opp_overlap 920122 920124 ATTAAAAATAAAAAA TATATTA AAGT TAATATA TATAGTTATTTACAT CLD_3760 920316 - 921485 + | putative amidohydrolase brnQ 922050 - 923351 + | branched-chain amino acid transport system II carrier protein TERM 1395 923394 - 923368 - f 78 -6.6 -4.87807 | opp_overlap 923369, overlap 923369 TTAATATAGTAAAAA GCACCTTGTTGT AAA ACAATAAGGTGT TTTTTTGTTTTTTCA TERM 1396 923369 - 923393 + F 100 -12.3 -6.28401 | opp_overlap 923368 923369 TAATATAGTAAAAAG CACCTTGTTGT AAA ACAATAAGGTG TTTTTTTGTTTTTTC TERM 1397 923393 - 923369 - f 89 -10.1 -3.516 | opp_overlap 923369, overlap 923368 TAATATAGTAAAAAG CACCTTGTTGT AAA ACAATAAGGTG TTTTTTTGTTTTTTC TERM 1398 923637 - 923653 + G 73 -3.7 -5.30155 | GTAGGGGACAAAGCC CCAGTAG CCA TTATTGG TTTTTTGATTACTGG brnQ 923517 - 924833 + | branched-chain amino acid transport system II carrier protein TERM 1399 924826 - 924812 - T 83 -3.5 -6.01369 | TAAACAAGAAAAAAA TCCAC AAGCA GCGGA TTTTTAATATAATAA TERM 1400 924849 - 924883 + T 74 -8.8 -3.05046 | opp_overlap 924844 924850, overlap 924848 TATAATAAAACTAAA AGTTGTCTCAAAAT TAAATCT ATTTTGAGACAACC CTTTTCACAAGATAA TERM 1401 924882 - 924850 - T 100 -12.3 -4.79384 | opp_overlap 924849 924848, overlap 924844 ATAATAAAACTAAAA GTTGTCTCAAAAT TAAATCT ATTTTGAGACAAC CCTTTTCACAAGATA CLD_3757 927392 - 924912 - | methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein family 5 TERM 1402 925653 - 925665 + g 70 -3.5 -5.06816 | overlap 925641 TAGTAAATCTTGCTC TATAA GAT TTATA TTTTTATTAGAACAT TERM 1403 926240 - 926250 + g 72 -6.8 -4.05446 | TTCCAGGAGATATTT CTCC ATA GGAG TTTATGGTTAAAAGA TERM 1404 927516 - 927506 - H 70 -4 -5.12971 | AACATTTAATAAAAA TTGT ATC ACAA AAGATTAATAAAGAA feoA 927615 - 927851 + | ferrous iron transport protein A TERM 1405 928656 - 928638 - g 72 -4.6 -4.91109 | opp_overlap 928639 928641, overlap 928639 TCTTTATTAGAAAAA GTATTTCC CAG GGAAATAT CCTTACAGTGGTTAG TERM 1406 928655 - 928639 - g 73 -8.1 -3.54183 | opp_overlap 928639 928641, overlap 928638 CTTTATTAGAAAAAG TATTTCC CAG GGAAATA TCCTTACAGTGGTTA CLD_3755 927990 - 928766 + | ferrous iron transport protein B feoB 928768 - 930291 + | ferrous iron transport protein B TERM 1407 930408 - 930420 + F 77 -3.5 -5.77856 | opp_overlap 930408 TATTTAACTTATAAA TTTAT TTC ATAAA TTTTTTTGCTTTATT TERM 1408 930499 - 930450 - f 100 -18.4 -5.76633 | opp_overlap 930453 930495, overlap 930453 930494 930495 TTACATATAAAAAAA TAAGACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTCTTG CTCCAAGATTTCTAT TERM 1409 930496 - 930453 - f 100 -20.1 -4.92669 | opp_overlap 930453 930495, overlap 930450 930494 930495 CATATAAAAAAATAA GACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTC TTGCTCCAAGATTTC TERM 1410 930453 - 930496 + F 100 -20.1 -3.16055 | opp_overlap 930453 930450 930494 930495, overlap 930495 CATATAAAAAAATAA GACCTTTGTTTTAACAAAT AATAAA ATTTGTTAAAACAAAGGTC TTGCTCCAAGATTTC TERM 1411 930495 - 930507 + F 70 -6.3 -4.23853 | opp_overlap 930453 930450 930494 930495, overlap 930453 TTGTTAAAACAAAGG TCTTG CTC CAAGA TTTCTATATATTCTT TERM 1412 930582 - 930566 - f 80 -9.5 -3.16564 | TGTCGATTTGATGAA CAAAGCT TAA AGCTTTG ACGAGCTACTCCCCT cobC 931024 - 931638 + | alpha-ribazole phosphatase TERM 1413 931989 - 931969 - g 82 -7.1 -4.73108 | TTGACAAAAGGAAAA TTATAATTA GCG TAATTATAA CAGGTGTCATCTTAT CLD_3752 931929 - 933491 + | vanW family protein TERM 1414 933651 - 933595 - f 95 -4.6 -6.47325 | overlap 933639 AAAAAATAAAAAAAA GAGACACCCTTTCGATAATATGTT GAGTGATGA AATAGAACATAGAAAGGGTGTCTC TCATGAATATTATCC cobS 933763 - 934509 + | cobalamin 5'-phosphate synthase CLD_3750 934671 - 935456 + | hypothetical protein CLD_3749 935698 - 935979 + | hypothetical protein CLD_3748 936112 - 936294 + | hypothetical protein TERM 1415 936499 - 936486 - g 86 -5.3 -5.50723 | GTAGCAAAACAAAAA GGTTT TTAC AAACC AGCAGCACAAGCTTC CLD_3747 936312 - 936560 + | hypothetical protein CLD_3746 937129 - 938478 + | hypothetical protein TERM 1416 938503 - 938532 + F 100 -9.6 -5.60993 | opp_overlap 938503 ATATGTCGTTGAAAA TATTACTGAAAA TTAATT TTTTCAGTAATA TTTTTTTATAACAAA TERM 1417 938532 - 938503 - f 86 -9.6 -4.08394 | opp_overlap 938503 ATATGTCGTTGAAAA TATTACTGAAAA TTAATT TTTTCAGTAATA TTTTTTTATAACAAA CLD_3745 938745 - 939098 + | putative 6-pyruvoyl tetrahydropterin synthase TERM 1418 939565 - 939551 - g 88 -4.4 -5.73339 | ACAATCATAAAAAAA TTAAAA CGG TTTTAA GAGATGGAAGAGAAA folP 939202 - 940389 + | dihydropteroate synthase CLD_3743 940542 - 940793 + | hypothetical protein folK 940893 - 941348 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase CLD_3741 941467 - 941907 + | heat shock protein TERM 1419 942043 - 942008 - f 100 -16.6 -2.85947 | opp_overlap 942008 942012 942041, overlap 942012 942041 GTTAATATAATATTA TAAATTAGTGTAGAAT ATAT ATTCTACACTAATTTA TTTTAGTAAAAAATA TERM 1420 942008 - 942043 + F 100 -16.6 -4.2558 | opp_overlap 942008 942012 942041, overlap 942012 942041 GTTAATATAATATTA TAAATTAGTGTAGAAT ATAT ATTCTACACTAATTTA TTTTAGTAAAAAATA TERM 1421 942039 - 942012 - f 100 -13 -4.09173 | opp_overlap 942008 942012, overlap 942008 ATATAATATTATAAA TTAGTGTAGAAT ATAT ATTCTACACTAA TTTATTTTAGTAAAA TERM 1422 942012 - 942039 + F 100 -13 -4.72007 | opp_overlap 942012 942008, overlap 942008 ATATAATATTATAAA TTAGTGTAGAAT ATAT ATTCTACACTAA TTTATTTTAGTAAAA TERM 1423 942127 - 942089 - f 72 -8.4 -3.14564 | gap 1, overlap 942121 TCAGGTGTGTAGCAA GCCTTAGCTTCTGTCTT AATAAA AAGATAGAAGCTAAG-C AATAGCAGTAATAGA TERM 1424 942158 - 942148 - f 70 -2.6 -5.49569 | opp_overlap 942148, overlap 942155 CAGTAATAGAAAAAA TTTA AAT TAAA TATTGATATATTTAT TERM 1425 942274 - 942262 - f 77 -3.5 -5.64006 | opp_overlap 942262 ATTTAATCAAAAAAA TTATT AAT AATAA TTTCTATACATGATA CLD_3740 942312 - 943601 + | MerR family transcriptional regulator TERM 1426 943622 - 943609 - f 70 -2.5 -5.56573 | overlap 943603 943612 AGAAATAAATAAAAA TTATT TTAA AATAA AAAATCAATTGTTAA CLD_3739 943656 - 944831 + | exopolysaccharide biosynthesis protein TERM 1427 944877 - 944916 + F 85 -11.2 -2.87468 | opp_overlap 944882, overlap 944882 GGTTAAAAATATTTA TTAGATTATAAGTAAGTA GAAA TATTTACTTATAATTTAA TCTAATCTAATGAAA TERM 1428 944882 - 944911 + F 81 -8.9 -3.8766 | opp_overlap 944882, overlap 944877 AAAATATTTATTAGA TTATAAGTAAGTA GAAA TATTTACTTATAA TTTAATCTAATCTAA CLD_3738 945160 - 946281 + | putative pleiotropic regulatory protein TERM 1429 946836 - 946859 + F 85 -10.4 -3.09635 | TTGGGGTGTTTTTAT GTCACAGTCT GATT AGATTGTGAC TTAACTGATAACACT CLD_3737 947096 - 947290 + | hypothetical protein TERM 1430 947575 - 947546 - f 90 -10.9 -3.18735 | opp_overlap 947546 947554, overlap 947554 GTAATATTTTACGAA TTAAAAAAGCTGC TATA GCAGCTTTTTTTA AATTTCATAAAATTA TERM 1431 947546 - 947576 + F 76 -9.3 -2.85841 | gap 1, opp_overlap 947546 947554, overlap 947554 GTAATATTTTACGAA TTAAAAAA-GCTGC TATA GCAGCTTTTTTTAA ATTTCATAAAATTAT TERM 1432 947567 - 947554 - f 100 -8.1 -5.30155 | opp_overlap 947546 947554, overlap 947546 TTACGAATTAAAAAA GCTGC TATA GCAGC TTTTTTTAAATTTCA TERM 1433 947554 - 947567 + F 100 -8.1 -5.58209 | opp_overlap 947554 947546, overlap 947546 TTACGAATTAAAAAA GCTGC TATA GCAGC TTTTTTTAAATTTCA CLD_3736 947733 - 948245 + | ECF subfamily RNA polymerase sigma factor CLD_3735 948250 - 949413 + | hypothetical protein CLD_3734 949783 - 950652 + | PhzF family phenazine biosynthesis protein TERM 1434 950766 - 950797 + T 79 -7.4 -4.68994 | opp_overlap 950766 AACGAGTTATCAAAA CACTGTATTATTCA AATT TGAATTTTACAGTG TTTTTACGTCGTAAT TERM 1435 950797 - 950766 - T 75 -7.4 -4.29396 | opp_overlap 950766 AACGAGTTATCAAAA CACTGTATTATTCA AATT TGAATTTTACAGTG TTTTTACGTCGTAAT TERM 1436 950966 - 950944 - T 77 -7.1 -4.46854 | gap 1, opp_overlap 950944, overlap 950938 ATATAAAAGTCAAAA GGACTA-CCT TATG AGGATAGTCC TTATTTAACTATTTA TERM 1437 950944 - 950966 + T 73 -7.1 -4.02707 | gap 1, opp_overlap 950938 950944 ATATAAAAGTCAAAA GGACTA-CCT TATG AGGATAGTCC TTATTTAACTATTTA CLD_3733 951529 - 950975 - | putative flavoredoxin nimA 951991 - 952485 + | nitroimidazole resistance protein NimA CLD_3731 952716 - 952874 + | hypothetical protein CLD_3730 953412 - 952996 - | hypothetical protein TERM 1438 953612 - 953599 - g 74 -5.3 -4.91459 | CAAGAGTTACAAAAA GATAG TAGG CTATC TATAAGAGAATTATC CLD_3729 953551 - 954000 + | HTH-type transcriptional regulator LrpC CLD_3728 954438 - 954950 + | rubrerythrin family protein TERM 1439 955002 - 954964 - T 70 -6.3 -4.21314 | opp_overlap 954959 954976, overlap 954968 AATAAGATGTTAAAA TAAAGTGCATAAGTT TGTAATTGT AACTTACACACTTTA TTTCACTCTATTCTG TERM 1440 955047 - 955078 + T 100 -16 -3.62522 | opp_overlap 955040 TAAACAGAGTTCTTG GCTTTAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGAATTC TERM 1441 955083 - 955122 + T 73 -8.8 -2.90615 | gap 1, opp_overlap 955040 955091, overlap 955087 955088 955090 CCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 1442 955088 - 955118 + T 79 -9.8 -2.75769 | opp_overlap 955091, overlap 955087 955083 955090 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 1443 955115 - 955091 - T 90 -10.1 -3.71552 | opp_overlap 955090 955088 955087 955083 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLD_3727 956169 - 955375 - | putative ABC transporter, permease protein TERM 1444 955403 - 955414 + g 70 -5.8 -4.31293 | opp_overlap 955403 TCAGGAATAAACTTA GAGG AAAT CCTC TTTATTAATATATAA CLD_3726 957105 - 956188 - | ABC transporter, ATP-binding protein CLD_3725 958222 - 957077 - | DNA-binding protein CLD_3724 959352 - 959528 + | hypothetical protein CLD_3723 959686 - 960498 + | non-haem haloperoxidase family protein TERM 1445 960649 - 960618 - T 72 -6 -4.45693 | opp_overlap 960618 960641, overlap 960641 CAATACAAACATAAA GCCTAGCTATTATA TAAG TACAATAGTTAGAC TAATTAATATTATTG CLD_3722 960775 - 960659 - | hypothetical protein CLD_3721 961231 - 961806 + | acetyltransferase CLD_3720 961960 - 962613 + | pentapeptide repeat-containing protein CLD_3719 963452 - 962883 - | flavodoxin-like fold domain-containing protein CLD_3718 964024 - 963470 - | NADPH-dependent FMN reductase TERM 1446 964099 - 964126 + r 100 -13 -4.28018 | opp_overlap 964107, overlap 964107 GCATATTATAATGTT TTTAAAAAGGCA AGGC TGCCTTTTTAAA TTTTACTGACGTATT TERM 1447 964107 - 964118 + r 73 -5.8 -4.88222 | opp_overlap 964107, overlap 964099 TAATGTTTTTAAAAA GGCA AGGC TGCC TTTTTAAATTTTACT TERM 1448 964118 - 964107 - R 71 -5.8 -4.58283 | opp_overlap 964107 964099 TAATGTTTTTAAAAA GGCA AGGC TGCC TTTTTAAATTTTACT CLD_3717 964455 - 964129 - | ArsR family transcriptional regulator CLD_3716 965626 - 964799 - | MerR family transcriptional regulator TERM 1449 965664 - 965682 + H 74 -6 -4.70515 | AACAACACCCATTGA CTCTTGAG CAA TTCAAGGG TTTATTTTAAGTATA TERM 1450 966300 - 966286 - g 78 -4.2 -5.41787 | opp_overlap 966287, overlap 966287 TAAAAAAGATAAAAA GTCCCT TTA AGGGAT ACTTTGTTGGAGAAT TERM 1451 966299 - 966287 - g 74 -7.7 -3.81412 | opp_overlap 966287, overlap 966286 AAAAAAGATAAAAAG TCCCT TTA AGGGA TACTTTGTTGGAGAA CLD_3715 965739 - 966356 + | acetyltransferase CLD_3714 966349 - 966504 + | hypothetical protein CLD_3713 966562 - 967077 + | hypothetical protein CLD_3712 967140 - 967664 + | acetyltransferase TERM 1452 967925 - 967911 - T 73 -2.2 -5.7827 | overlap 967904 AAGACAAATAAAAAA TACTTT TAG AAAATA GATAGCTATAAAAAT CLD_3711 969072 - 968371 - | hypothetical protein TERM 1453 969337 - 969304 - R 88 -8.4 -4.84527 | opp_overlap 969304 969311, overlap 969311 TTTATAGATGAAAAA TAAAAAACTCCCTA AATCAA TAGGAAGTTCTTTA TGTAATCTTATTTAG TERM 1454 969330 - 969311 - R 86 -4.3 -5.95286 | opp_overlap 969311 969304, overlap 969304 ATGAAAAATAAAAAA CTCCCTA AATCAA TAGGAAG TTCTTTATGTAATCT CLD_3710 969657 - 969349 - | putative transcriptional regulator TERM 1455 969716 - 969704 - H 72 -6.3 -4.4009 | opp_overlap 969691 969690 969702 969704 GTTTACTTGACAAAA GTAAG TTG CTTAC TATATTATACCAATA CLD_3709 969785 - 970414 + | nitroreductase family protein CLD_3708 970778 - 972220 + | lipase TERM 1456 972276 - 972239 - T 100 -14.5 -3.65071 | opp_overlap 972244 972274, overlap 972244 GATGAAATAATAAGA TAAAACTAGCTTATCAT ACTT ATGATAAGCTAGTTTTT TATACTAAAATTTAC TERM 1457 972271 - 972244 - T 100 -14.4 -4.83518 | opp_overlap 972244, overlap 972239 AATAATAAGATAAAA CTAGCTTATCAT ACTT ATGATAAGCTAG TTTTTTATACTAAAA TERM 1458 972244 - 972271 + T 100 -14.4 -5.31275 | opp_overlap 972244 972239 AATAATAAGATAAAA CTAGCTTATCAT ACTT ATGATAAGCTAG TTTTTTATACTAAAA oxdD 973589 - 972381 - | oxalate decarboxylase TERM 1459 973829 - 973856 + r 93 -10 -4.08216 | opp_overlap 973829 GGCAAATAAAACAAA GTTGTGGAATGG GTAA TTATTCCACAAC TTTTACAGCAAATAA TERM 1460 973856 - 973829 - R 91 -8.6 -4.96996 | opp_overlap 973829 GGCAAATAAAACAAA GTTGTGGAAT GGGTAATT ATTCCACAAC TTTTACAGCAAATAA CLD_3706 974530 - 973952 - | decarboxylase family protein CLD_3705 975043 - 974588 - | hypothetical protein TERM 1461 975966 - 975956 - g 83 -3.2 -5.68438 | CTATTAAAGAAAAAA TCCC AGA GAGA ATTATGGGCATAGCA CLD_3704 975157 - 976044 + | LysR family transcriptional regulator CLD_3703 976317 - 976763 + | acetyltransferase TERM 1462 976960 - 976933 - T 100 -10.8 -4.7889 | opp_overlap 976933 ACAAATATTTAAAAA GGTATAGAACTA AATT TAATTCTATACC TTTTGTGCTAGTACT TERM 1463 976933 - 976960 + T 82 -8.6 -4.49311 | opp_overlap 976933 ACAAATATTTAAAAA GGTATAGAACTA AATT TAATTCTATACC TTTTGTGCTAGTACT CLD_3702 977221 - 977051 - | hypothetical protein CLD_3701 977719 - 977252 - | hypothetical protein CLD_3700 978152 - 977724 - | hypothetical protein CLD_3699 978240 - 978614 + | cyclic nucleotide-binding regulatory protein CLD_3698 978619 - 978744 + | cyclic nucleotide-binding regulatory protein TERM 1464 978988 - 978936 - T 91 -13.3 -2.57344 | opp_overlap 978936 978942 978946 978949, overlap 978946 978949 TAGGGCTTTTATAAG TAATATTAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCATTATTA TACTATAAAGTTATG TERM 1465 978936 - 978988 + T 83 -11.1 -2.65271 | opp_overlap 978936 978946 978949, overlap 978942 978946 978949 TAGGGCTTTTATAAG TAATATTAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCATTATTA TACTATAAAGTTATG TERM 1466 978942 - 978982 + T 93 -10.1 -3.87104 | opp_overlap 978936 978946 978949, overlap 978936 978946 978949 TTTTATAAGTAATAT TAAATAATCCAAAGATA TCTTAAC TATCTTTGGATTATTCA TTATTATACTATAAA TERM 1467 978946 - 978978 + T 95 -10.9 -3.59279 | opp_overlap 978936 978946 978949, overlap 978942 978936 978949 ATAAGTAATATTAAA TAATCCAAAGATA TCTTAAC TATCTTTGGATTA TTCATTATTATACTA TERM 1468 978978 - 978946 - T 100 -10.9 -3.97812 | opp_overlap 978946 978942 978936 978949, overlap 978936 978949 ATAAGTAATATTAAA TAATCCAAAGATA TCTTAAC TATCTTTGGATTA TTCATTATTATACTA TERM 1469 978949 - 978975 + T 78 -8.2 -3.91564 | opp_overlap 978946 978936 978949, overlap 978946 978942 978936 AGTAATATTAAATAA TCCAAAGATA TCTTAAC TATCTTTGGA TTATTCATTATTATA TERM 1470 978975 - 978949 - T 79 -8.2 -4.09455 | opp_overlap 978949 978946 978942 978936, overlap 978946 978936 AGTAATATTAAATAA TCCAAAGATA TCTTAAC TATCTTTGGA TTATTCATTATTATA CLD_3697 979413 - 978991 - | hypothetical protein TERM 1471 979116 - 979126 + g 72 -4 -5.09225 | AATCAGGAATTTTCT TGAT AAA ATCA TTTTTTAAATCAAAT TERM 1472 979209 - 979226 + g 82 -6.3 -5.26119 | TTCCATTAGATGGGA TAGTGGT AAAT GCCACTA TTTTGTTTTTAGCAA TERM 1473 980200 - 980190 - g 70 -5.4 -4.55798 | GAGTTTAAATCAAAA CCAT TAG ATGG AAGTGGATGGATAGA CLD_3696 979536 - 980468 + | hypothetical protein TERM 1474 980530 - 980485 - T 100 -14.1 -4.88067 | opp_overlap 980485 ATTTACTTAGAAAAA CCTCACTTACAACTGATACGG AGAA CCGTACCATAAGTAAGTGAGG TTTTTACTAAAGTTG TERM 1475 980485 - 980530 + T 100 -11.9 -4.74801 | opp_overlap 980485 ATTTACTTAGAAAAA CCTCACTTACAACTGATACGG AGAA CCGTACCATAAGTAAGTGAGG TTTTTACTAAAGTTG TERM 1476 980577 - 980630 + T 100 -13.6 -3.67517 | gap 1, opp_overlap 980556 980584, overlap 980573 980584 TAAGGTAACTCTCAC CACAAAA-TGTGGAGATTTAGCCAG GCTAA TTGGATAAATTTCCACATTTTTGTG TTTAAGATATTGATG TERM 1477 980622 - 980584 - T 81 -7.6 -4.4648 | opp_overlap 980573 980577 980584 ACTCTCACCACAAAA TGTGGAGATTTAGCCA GGCTAAT TGGATAAATTTCCACA TTTTTGTGTTTAAGA TERM 1478 980584 - 980622 + T 100 -10.5 -5.19879 | opp_overlap 980584, overlap 980573 980577 ACTCTCACCACAAAA TGTGGAGATTTAGCCAG GCTAA TTGGATAAATTTCCACA TTTTTGTGTTTAAGA CLD_3695 981145 - 980675 - | hypothetical protein CLD_3694 981924 - 981145 - | hypothetical protein TERM 1479 982006 - 982019 + r 76 -2.5 -5.86976 | opp_overlap 982002 982006, overlap 982002 TATATTAGACATATA TAATT ATAT AATTA TTTTTTATTTTATAC TERM 1480 982485 - 982454 - R 87 -10.2 -3.44672 | overlap 982452 982455 TTTTATCAAAAGAGA TGGACCGTGATAGA TTAT TCTATAACGGTCCT AAAATAGTGGTAGAG TERM 1481 982484 - 982455 - R 100 -13.7 -2.66321 | overlap 982454 982452 TTTATCAAAAGAGAT GGACCGTGATAGA TTAT TCTATAACGGTCC TAAAATAGTGGTAGA TERM 1482 982559 - 982593 + r 76 -4.3 -5.38054 | overlap 982562 982564 AAGGAACAGGCATTA TTAGTGCGGTTATTG CAATT TAATAGCCGCTCTTA TTTTTGTTTATGCGG TERM 1483 982562 - 982590 + r 76 -6 -4.76311 | overlap 982559 982564 GAACAGGCATTATTA GTGCGGTTATTG CAATT TAATAGCCGCTC TTATTTTTGTTTATG TERM 1484 982564 - 982588 + r 71 -7.2 -3.95352 | overlap 982562 982559 ACAGGCATTATTAGT GCGGTTATTG CAATT TAATAGCCGC TCTTATTTTTGTTTA CLD_3693 983078 - 982578 - | putative peptide deformylase CLD_3692 983299 - 984735 + | GntR family transcriptional regulator TERM 1485 984734 - 984778 + T 86 -5.8 -5.67063 | opp_overlap 984737 984740, overlap 984737 984740 GAGAAGCATGGTTAT AAGGAAGCTGTCTCAAAATA TATTT TATTATGAGGCAGCCTCTTG TTTTTTTATAGTAAG TERM 1486 984775 - 984737 - T 75 -9.7 -2.59039 | opp_overlap 984734 984737 984740, overlap 984740 AAGCATGGTTATAAG GAAGCTGTCTCAAAATA TATTT TATTATGAGGCAGCCTC TTGTTTTTTTATAGT TERM 1487 984737 - 984775 + T 95 -9.7 -4.9041 | opp_overlap 984737 984740, overlap 984734 984740 AAGCATGGTTATAAG GAAGCTGTCTCAAAATA TATTT TATTATGAGGCAGCCTC TTGTTTTTTTATAGT TERM 1488 984772 - 984740 - T 70 -7.8 -3.44622 | opp_overlap 984737 984734 984740, overlap 984737 CATGGTTATAAGGAA GCTGTCTCAAAATA TATTT TATTATGAGGCAGC CTCTTGTTTTTTTAT TERM 1489 984740 - 984772 + T 82 -10 -3.00071 | opp_overlap 984740 984737, overlap 984737 984734 CATGGTTATAAGGAA GCTGTCTCAAAATA TATTT TATTATGAGGCAGC CTCTTGTTTTTTTAT CLD_3691 985331 - 984813 - | nitroreductase family protein CLD_3690 986379 - 985573 - | iron-sulfur cluster-binding protein CLD_3689 986725 - 986886 + | hypothetical protein CLD_3688 987117 - 987821 + | alpha/beta hydrolase TERM 1490 988868 - 988851 - g 81 -3.5 -5.64274 | gap 1 CTATCGAGAAAAAAA TAGCG-AT ATC ATACGCTA TATCAAAAGTAATCT CLD_3687 987898 - 988995 + | AraC family transcriptional regulator TERM 1491 990227 - 990209 - g 76 -5.4 -5.11613 | opp_overlap 990209 990206 AGATGATTGAAAAAA TACTTAAC ATA ATTAAGTA TTATTTTAACTTAGA CLD_3686 989662 - 990495 + | transcription antiterminator TERM 1492 990521 - 990571 + F 100 -13.8 -5.57396 | opp_overlap 990514 990529 ACTTTAAATAGGCTA TACCTAAATAAAAATTTACTAGTT CTA GACTAATGAATTTTTATTTGGGTA TTTTTTATTGCTTAT CLD_3685 990620 - 992497 + | PTS system, beta-glucoside-specific, IIABC component CLD_3684 992825 - 994246 + | glycosy hydrolase family protein CLD_3683 994376 - 994582 + | hypothetical protein TERM 1493 994656 - 994639 - T 100 -8.5 -5.5074 | opp_overlap 994639 TAATGTAATAAAAAA TAGTAGC AGGG GCTACTA TTTTTTTGAGATTTT TERM 1494 994639 - 994656 + T 100 -8.5 -5.51165 | opp_overlap 994639 TAATGTAATAAAAAA TAGTAGC AGGG GCTACTA TTTTTTTGAGATTTT mraY 995723 - 994770 - | phospho-N-acetylmuramoyl-pentapeptide-transferase TERM 1495 995018 - 995002 - G 74 -9.5 -2.82516 | TTTTTGAGTATCATA GCTATTG TTG CAATAGC ACCACCAAGGGCTAA TERM 1496 995400 - 995415 + g 88 -3.3 -6.08563 | AATCATTTTTCCTTT TGAAG TTAATC CTTCA TTTTTTTTATGTATT CLD_3681 995991 - 996851 + | putative DNA-binding protein TERM 1497 997063 - 997053 - f 82 -2.6 -6.20267 | opp_overlap 997053 TTAAAAATAAAAAAA TATT TGA AATA ATTTAAAGTGCCTAA CLD_3680 997202 - 997825 + | methyltransferase CLD_3679 998099 - 998659 + | TetR family transcriptional regulator CLD_3678 998684 - 999775 + | radical SAM domain-containing protein TERM 1498 1000027 - 999992 - T 83 -7.6 -4.58236 | opp_overlap 999994 999997 1000024 1000026, overlap 999986 999994 999997 CATAAAAGATTAAAA GTTAAGGAGGATATGG TTTC CCACACCCTCCTTATA AATTATGACAATTTA TERM 1499 1000025 - 999994 - T 100 -14.6 -2.58362 | opp_overlap 999994 999997 1000024, overlap 999986 999992 999997 TAAAAGATTAAAAGT TAAGGAGGATATGG TTTC CCACACCCTCCTTA TAAATTATGACAATT TERM 1500 999994 - 1000025 + T 79 -10.2 -2.59927 | opp_overlap 999986 999994 999992 999997, overlap 999997 1000024 TAAAAGATTAAAAGT TAAGGAGGATATGG TTTC CCACACCCTCCTTA TAAATTATGACAATT TERM 1501 1000022 - 999997 - T 95 -11.9 -3.41195 | opp_overlap 999994 999997, overlap 999994 999992 AAGATTAAAAGTTAA GGAGGATATGG TTTC CCACACCCTCC TTATAAATTATGACA TERM 1502 999997 - 1000022 + T 70 -7.5 -3.45054 | opp_overlap 999997 999994 999992, overlap 999994 AAGATTAAAAGTTAA GGAGGATATGG TTTC CCACACCCTCC TTATAAATTATGACA CLD_3677 1000478 - 1000023 - | hypothetical protein CLD_3676 1001762 - 1000590 - | MerR family transcriptional regulator TERM 1503 1002234 - 1002204 - H 72 -7.7 -3.65529 | opp_overlap 1002209 1002212, overlap 1002209 ATAGCCTTACTTAAA GAAAAGAACCCTA ATAAA TAGGGCTCTTTTT TATGTGGAATTTTCT TERM 1504 1002209 - 1002229 + H 81 -5.4 -5.37043 | opp_overlap 1002209 1002204, overlap 1002212 CTTACTTAAAGAAAA GAACCCTA ATAAA TAGGGCTC TTTTTTATGTGGAAT TERM 1505 1002229 - 1002209 - H 86 -7.6 -4.90778 | opp_overlap 1002209 1002212, overlap 1002204 CTTACTTAAAGAAAA GAACCCTA ATAAA TAGGGCTC TTTTTTATGTGGAAT CLD_3675 1002672 - 1003370 + | putative propanediol utilization protein PduB TERM 1506 1003612 - 1003581 - f 75 -3.8 -5.5074 | gap 1, opp_overlap 1003581 TAATGTAATAAAAAA TAGTAGCACCCAAAT GCG AATAGGGT-CTACTA TTTTTTAGATTTTTT TERM 1507 1003581 - 1003612 + F 72 -3.8 -5.32608 | gap 1, opp_overlap 1003581 TAATGTAATAAAAAA TAGTAGCACCCAAAT GCG AATAGGGT-CTACTA TTTTTTAGATTTTTT TERM 1508 1003920 - 1003908 - g 87 -3.5 -5.9873 | GGATCATAAAAAAAA TAAAA AAT TTTTA AATTTATTAATGCTA CLD_3674 1003891 - 1005237 + | hypothetical protein TERM 1509 1005255 - 1005293 + F 74 -6.3 -4.66057 | gap 1, opp_overlap 1005267, overlap 1005257 1005267 CTCACATTTATCATT CAGCTCAG-AAAATTAAA GTTA TTTAATTTTTCTGGGCTA TTTTAATTTCTATAT TERM 1510 1005257 - 1005291 + F 81 -8.9 -3.9258 | gap 1, opp_overlap 1005267, overlap 1005255 1005267 CACATTTATCATTCA GCTCAG-AAAATTAAA GTTA TTTAATTTTTCTGGGC TATTTTAATTTCTAT TERM 1511 1005368 - 1005384 + F 76 -9.5 -2.81134 | opp_overlap 1005359 1005358, overlap 1005367 TGAAAGCGATTCGCA CCAAATC GAA GATTTGG ATTCTCTGCTTTTCT TERM 1512 1005494 - 1005455 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1005462 1005489 1005491 1005492, overlap 1005458 1005459 1005461 1005487 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AGA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGGG TERM 1513 1005489 - 1005459 - f 79 -9.8 -2.75769 | opp_overlap 1005462, overlap 1005458 1005455 1005461 1005487 CTCCTAAAGGATAAC GACTTCTAAGGAGT AGA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 1514 1005462 - 1005486 + F 90 -10.1 -3.71552 | opp_overlap 1005461 1005459 1005458 1005455 CTAAAGGATAACGAC TTCTAAGGAGT AGA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 1515 1005543 - 1005487 - f 70 -7.4 -3.66028 | gap 1, opp_overlap 1005489 1005491 1005492, overlap 1005459 1005458 1005455 1005499 1005518 TAGAACTCCTAAGAA TTCTG-TTAATAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAAATCTGTT TATAGAAAAATTGTT TERM 1516 1005489 - 1005541 + F 100 -14.4 -3.86822 | gap 1, opp_overlap 1005458 1005455 1005487 1005499 1005518, overlap 1005491 1005492 GAACTCCTAAGAATT CTG-TTAATAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAAATCTG TTTATAGAAAAATTG TERM 1517 1005491 - 1005539 + F 100 -15.6 -3.52113 | gap 1, opp_overlap 1005455 1005487 1005499 1005518, overlap 1005489 1005492 ACTCCTAAGAATTCT G-TTAATAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAAATC TGTTTATAGAAAAAT TERM 1518 1005492 - 1005537 + F 100 -19.3 -3.3353 | opp_overlap 1005455 1005487 1005499 1005518, overlap 1005491 1005489 CTCCTAAGAATTCTG TTAATAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAAA TCTGTTTATAGAAAA TERM 1519 1005530 - 1005499 - f 100 -21.8 -3.62522 | opp_overlap 1005492 1005491 1005489, overlap 1005487 1005518 GAATTCTGTTAATAA GCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGC TTAGAAATCTGTTTA CLD_3673 1005656 - 1006162 + | hypothetical protein TERM 1520 1006155 - 1006212 + T 100 -11.9 -5.56673 | gap 1, opp_overlap 1006160 1006164, overlap 1006153 1006157 ATATTTATATTCCTA T-AGAATAAAGTCTATATCTTATTTTAT ATG GTAATTTAAGATATAGACTTTATTCTTA TTTTTTGTTGTGGAT TERM 1521 1006157 - 1006209 + T 100 -16.1 -4.84921 | opp_overlap 1006160 1006164, overlap 1006153 1006155 ATTTATATTCCTATA GAATAAAGTCTATATCTTATTTTAT ATG GTAATTTAAGATATAGACTTTATTC TTATTTTTTGTTGTG TERM 1522 1006206 - 1006160 - T 95 -11.3 -3.49951 | opp_overlap 1006153 1006157 1006155, overlap 1006164 TATATTCCTATAGAA TAAAGTCTATATCTTATTTTA TATGG TAATTTAAGATATAGACTTTA TTCTTATTTTTTGTT TERM 1523 1006202 - 1006164 - T 81 -7.7 -4.38927 | opp_overlap 1006153 1006157 1006155, overlap 1006160 TTCCTATAGAATAAA GTCTATATCTTATTTTA TATGG TAATTTAAGATATAGAC TTTATTCTTATTTTT CLD_3672 1006590 - 1006255 - | antibiotic biosynthesis monooxygenase TERM 1524 1006701 - 1006713 + r 70 -6.3 -4.33708 | opp_overlap 1006701 TGGGACATTATTATA TGCTA TTT TAGCA TTTTACTAATGATTT CLD_3671 1007653 - 1006754 - | hypothetical protein CLD_3670 1007744 - 1008454 + | ArsR family transcriptional regulator CLD_3669 1009875 - 1008643 - | peptidyl-arginine deiminase TERM 1525 1010939 - 1010951 + G 75 -4.1 -5.3321 | overlap 1010940 ATTATATTAATTTTT TCATG GCT CATGG TTTTTATTGTTGGTT CLD_3667 1010810 - 1011673 + | DMT family permease CLD_3666 1012030 - 1012617 + | hypothetical protein CLD_3665 1013075 - 1012698 - | ErfK/YbiS/YcfS/YnhG family protein TERM 1526 1012741 - 1012765 + g 80 -8.7 -3.82378 | overlap 1012742 GGAACAAGGTTGCTT AGTTCAATAAC TTG GTTATTGAACA TTCTTATACATCCGT TERM 1527 1012742 - 1012764 + g 100 -12.2 -2.88945 | overlap 1012741 GAACAAGGTTGCTTA GTTCAATAAC TTG GTTATTGAAC ATTCTTATACATCCG TERM 1528 1013218 - 1013175 - R 100 -7.6 -5.63857 | opp_overlap 1013175 AAAAATTGAAAAAAA TAGATGCAACTACAATGATT TCAT AAGAATTGTAGCAGCATCTA TTTTTTTAATTAGCT TERM 1529 1013175 - 1013218 + r 86 -5.4 -5.64006 | opp_overlap 1013175 AAAAATTGAAAAAAA TAGATGCAACTACAATGATT TCAT AAGAATTGTAGCAGCATCTA TTTTTTTAATTAGCT CLD_3664 1013582 - 1013250 - | hypothetical protein CLD_3663 1014154 - 1013846 - | hypothetical protein CLD_3662 1014749 - 1014372 - | acetyltransferase CLD_3661 1014899 - 1014765 - | hypothetical protein TERM 1530 1015161 - 1015147 - g 88 -4.4 -5.71638 | opp_overlap 1015147 TAAGAATGAAAAAAA TAAATA CAT TATTTA TGAGTTTATGCTTTA CLD_3660 1015137 - 1015994 + | hypothetical protein CLD_3659 1016058 - 1016855 + | hypothetical protein CLD_3658 1017294 - 1018091 + | hypothetical protein TERM 1531 1018711 - 1018721 + G 75 -4 -5.18715 | TTTTAATGCCAGTTT TTTC AGT GAAA TTTTATTCTTTTTAT TERM 1532 1019984 - 1019972 - g 72 -6.3 -4.29929 | AGGAAATTTAATAAA TGTAG GCT CTACA GGAAAAGAAGAAAAT CLD_3657 1018629 - 1020236 + | hypothetical protein CLD_3656 1022960 - 1020600 - | ABC transporter, ATP-binding/permease protein TERM 1533 1022272 - 1022308 + g 70 -6.2 -4.13767 | gap 1, overlap 1022276 TTATAATCGTTTGAG TTATTTTCTGATACAAA TGGA TTGGTATCAGAA-ATAA TTTTACCATCGGAAA TERM 1534 1022276 - 1022305 + g 76 -9.5 -3.09831 | overlap 1022272 AATCGTTTGAGTTAT TTTCTGATACAAA TGGA TTGGTATCAGAAA TAATTTTACCATCGG TERM 1535 1023004 - 1023045 + H 82 -8.3 -4.49958 | opp_overlap 1022997 1023010, overlap 1023006 1023010 AGTATATATAAAGTT TTTAAACTGAATGTAAACT GGTG AGTTTATATGCAGTTTATA TTTATTTGATAAAGT TERM 1536 1023006 - 1023043 + H 100 -10.9 -3.85603 | opp_overlap 1022997 1023010, overlap 1023004 1023010 TATATATAAAGTTTT TAAACTGAATGTAAACT GGTG AGTTTATATGCAGTTTA TATTTATTTGATAAA TERM 1537 1023010 - 1023039 + H 77 -7.3 -4.50993 | opp_overlap 1023010, overlap 1023006 1023004 TATAAAGTTTTTAAA CTGAATGTAAACT GGTG AGTTTATATGCAG TTTATATTTATTTGA TERM 1538 1023204 - 1023191 - g 76 -5.3 -5.11063 | AGTACTTAATAAAAA TGGAT ATAA ATCCA TTGAAGCTAAAGATG CLD_3655 1023120 - 1023791 + | DNA-binding response regulator TERM 1539 1024050 - 1024034 - g 72 -6.6 -4.1822 | TCTGATCTTAACAAA GCAACT AAAGA AGTTGC TAAGGGAAATTTTAA CLD_3654 1023791 - 1024819 + | sensor histidine kinase CLD_3653 1025111 - 1025719 + | BioY family protein TERM 1540 1025793 - 1025819 + F 78 -4.6 -5.626 | opp_overlap 1025793 ATGTAATTTTATAAA CTATTAAGTG GTGTGGA TACTTAATAG TTTTTTTGTGAAATA TERM 1541 1027431 - 1027401 - g 90 -7.7 -5.252 | gap 1, opp_overlap 1027400 TATTGGTATAAAAAA TCATCGCAG-GAAG GAAA CTTCACTGCTATGA GTAATATAGGGTTTA CLD_3652 1025940 - 1027646 + | hypothetical protein TERM 1542 1027658 - 1027694 + F 100 -13.3 -4.85599 | opp_overlap 1027658 1027662 GTAGATTATAATTGA TATAGGTTACTAAGGAT ATT ATTCTTGGTAGCCTATA TTTTTATCCCATGAC CLD_3651 1027989 - 1028534 + | acetyltransferase TERM 1543 1029672 - 1029662 - g 70 -4 -4.96848 | overlap 1029644 GGTTTTAGATAAAAA CATT AAA AATG AATGGCATAAAGATA TERM 1544 1030123 - 1030101 - g 85 -2.7 -5.84381 | TTATTAATAAAAAAA TCTGGAGCA GTACT TATTCCAGA AAATAAAAAATATAA CLD_3650 1028613 - 1030208 + | putative LexA repressor TERM 1545 1030227 - 1030265 + F 100 -15 -5.5353 | opp_overlap 1030227 TATATAATTATTGAA CTGTCTTATATTTGTTAT AAT ATAATAAATATAAGGCAG TTTTTTGTTAATATG TERM 1546 1030265 - 1030227 - f 87 -10.6 -3.15677 | opp_overlap 1030227 TATATAATTATTGAA CTGTCTTATATTTGTTAT AAT ATAATAAATATAAGGCAG TTTTTTGTTAATATG cobU 1030487 - 1031044 + | cobinamide kinase / cobinamide phosphate guanyltransferase TERM 1547 1031392 - 1031421 + T 71 -7.1 -3.94404 | overlap 1031386 TGATTTGGTGTGAGT CGCTTACTCGTTC GAGG GAACGAGAAGGAG TTTCATTAAATAATT TERM 1548 1031914 - 1031956 + T 100 -18.2 -5.00895 | opp_overlap 1031914 1031917 AATCAGCATGTAGAA TAAGGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACCTTA TTTTTGTGTAATAAA TERM 1549 1031956 - 1031914 - T 100 -20.4 -3.3854 | opp_overlap 1031914, overlap 1031917 AATCAGCATGTAGAA TAAGGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACCTTA TTTTTGTGTAATAAA TERM 1550 1031953 - 1031917 - T 100 -17.7 -3.82824 | opp_overlap 1031914, overlap 1031914 CAGCATGTAGAATAA GGTGATTCAAAATAAAT TAA ATCTATTTTGAATCACC TTATTTTTGTGTAAT TERM 1551 1032003 - 1031977 - T 71 -8.2 -2.94561 | opp_overlap 1031976 1031975 1031965, overlap 1031991 GTGTAATAAATACTA GCTATTTTAGAT AAT ATTTAAAATAGC ATATAATTATTATTT tipA 1032777 - 1032013 - | transcriptional activator TipA TERM 1552 1032149 - 1032131 - G 77 -9.6 -3.03635 | TAAAGTTCCCCAAGA CCCCTAAA TAT TTCAGGGG TACAATCATAAAAGT CLD_3647 1033295 - 1033420 + | hypothetical protein TERM 1553 1033411 - 1033440 + F 100 -15.3 -5.0916 | opp_overlap 1033407 ATTTTTAACTATGCA TTGGCTATAAACT CTAA AGTTTATAGCCAA TTTTTATATTCAAAA cobQ 1033480 - 1034961 + | cobyric acid synthase CobQ TERM 1554 1035813 - 1035803 - g 74 -5.4 -4.8543 | CAAGTGGTAGAAAAA CCTA CTA TAGG AGATAAGATAAAGGA cobD 1034963 - 1035934 + | cobalamin biosynthesis protein CobD CLD_3644 1036319 - 1037407 + | aminotransferase family protein cbiM 1037592 - 1038311 + | cobalamin biosynthesis protein CbiM cbiN 1038315 - 1038614 + | cobalt transport protein TERM 1555 1038693 - 1038643 - gf 100 -10.9 -4.83615 | gap 1, opp_overlap 1038643 1038659 1038666 CATCCTTTAGAAAAA GCAATTTTGAGTATAATCCCAA TTGTAATT TTGGGATT-TACTCAAAACTAC ATAATTGTTTTTTGT TERM 1556 1038774 - 1038761 - gf 86 -2.5 -6.04419 | AAAATAATAAAAAAA TATTT ACAA AAATA ACTCTAGAGGTAACA cbiQ 1038577 - 1039275 + | cobalt ABC transporter, permease protein CbiQ TERM 1557 1039256 - 1039266 + F 70 -2.6 -5.52384 | overlap 1039247 TTATTTTAATGTTAT TATT AGT AATA TTTTTTTAATAAAAA TERM 1558 1039436 - 1039457 + F 77 -7.5 -4.19483 | opp_overlap 1039435 TATAAAGAATTAAGG TTTCTTTTA ATAT TAAAAGAAA TTTATCTCTATATAA CLD_3640 1039720 - 1040367 + | precorrin-2 dehydrogenase TERM 1559 1041184 - 1041170 - gf 75 -5.6 -4.78107 | GATCAGTATGAAAAA CTAGGC ATA GCCTTG GCAGAGCATATACTG hemC 1040336 - 1041208 + | porphobilinogen deaminase TERM 1560 1041571 - 1041555 - g 73 -3.7 -5.20222 | ATGAAATAAATAAAA TGCTAGT TAA ATTAGCA AAACAAGGTCATATT TERM 1561 1041967 - 1041956 - g 88 -3 -6.02546 | TCAAAGCAAAAAAAA GTTA TAGG TAAC TTAGAAAATATAGTA CLD_3638 1041344 - 1042804 + | uroporphyrinogen III synthase/methyltransferase TERM 1562 1042929 - 1042913 - f 73 -5.3 -4.86001 | opp_overlap 1042913 ACTATGTTAGAAAAA TATAATT ATT AATTATA TTGTGGGGGTATGAA CLD_3637 1042950 - 1043132 + | hypothetical protein hemB 1043394 - 1044368 + | delta-aminolevulinic acid dehydratase TERM 1563 1044438 - 1044392 - f 100 -14 -3.64162 | opp_overlap 1044392 1044397 1044399 1044400 1044435 ATGAATTAGTTTAAA GTTGAGGGTGGAATTTTTTCAT TTC ATGAAAAAATTCCACTCTGTAC TCTGTACTCTGTACT TERM 1564 1044392 - 1044438 + F 100 -16.2 -2.99813 | opp_overlap 1044392, overlap 1044397 1044399 1044400 1044435 ATGAATTAGTTTAAA GTTGAGGGTGGAATTTTTTCAT TTC ATGAAAAAATTCCACTCTGTAC TCTGTACTCTGTACT TERM 1565 1044397 - 1044433 + F 100 -19.1 -2.90238 | opp_overlap 1044392, overlap 1044392 1044399 1044400 TTAGTTTAAAGTTGA GGGTGGAATTTTTTCAT TTC ATGAAAAAATTCCACTC TGTACTCTGTACTCT TERM 1566 1044399 - 1044431 + F 100 -18.1 -2.99813 | opp_overlap 1044392, overlap 1044397 1044392 1044400 AGTTTAAAGTTGAGG GTGGAATTTTTTCAT TTC ATGAAAAAATTCCAC TCTGTACTCTGTACT TERM 1567 1045534 - 1045515 - g 77 -5.8 -4.88163 | overlap 1045517 TTAAGAGAAAACAAA TCTATGCT AAGT AGCATAAA TAAAAAATTAAATAA cobB 1044615 - 1045937 + | cobyrinic acid a,c-diamide synthase cobH 1045962 - 1046588 + | precorrin-8X methylmutase CLD_3633 1046801 - 1047643 + | CAAX amino terminal protease family protein CLD_3632 1047817 - 1048008 + | acetyltransferase CLD_3631 1048057 - 1048347 + | acetyltransferase CLD_3630 1048635 - 1049003 + | hypothetical protein TERM 1568 1049465 - 1049475 + G 86 -5.4 -5.60993 | opp_overlap 1049465 1049463 AGAGGAGTTAAAAGA CCAT ACG ATGG TTTTTTTCTAAGAGC CLD_3629 1049171 - 1049905 + | hypothetical protein CLD_3628 1049957 - 1050385 + | acetyltransferase CLD_3627 1050635 - 1051156 + | nitroreductase family protein CLD_3626 1051380 - 1051973 + | hypothetical protein TERM 1569 1052053 - 1052085 + G 84 -7 -5.31275 | overlap 1052055 CCACAGGTTCCTGTG CAGCTGCAGCAGCT AAGGC AGCTGCTATAGCTC TTTTTTATAATAAAA TERM 1570 1052055 - 1052083 + G 91 -9.6 -4.29153 | overlap 1052053 ACAGGTTCCTGTGCA GCTGCAGCAGCT AAGGC AGCTGCTATAGC TCTTTTTTATAATAA cbiD 1051986 - 1053065 + | cobalamin biosynthesis protein CbiD cbiE 1053266 - 1053937 + | precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit CLD_3623 1054121 - 1054501 + | hypothetical protein cbiT 1054565 - 1055140 + | precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit CLD_3621 1055140 - 1055571 + | hypothetical protein TERM 1571 1056038 - 1056056 + G 72 -9 -2.94099 | opp_overlap 1056037 1056038, overlap 1056018 1056022 TGTTGTTTTGATAAT TGGTTTAA ATT TTAAACCA TATATAATAGCAGCA TERM 1572 1056056 - 1056038 - g 70 -9 -2.57132 | opp_overlap 1056018 1056038 1056022, overlap 1056037 TGTTGTTTTGATAAT TGGTTTAA ATT TTAAACCA TATATAATAGCAGCA TERM 1573 1056129 - 1056158 + G 75 -4.5 -5.06103 | opp_overlap 1056129 GTTGAGATAAAAAAA TTAACTAATGTAA TAAA TCATATTAGTTAA TTTTTTAGAAGTTAT TERM 1574 1056158 - 1056129 - g 90 -4.5 -5.71712 | opp_overlap 1056129 GTTGAGATAAAAAAA TTAACTAATGTAA TAAA TCATATTAGTTAA TTTTTTAGAAGTTAT CLD_3620 1055607 - 1056158 + | hypothetical protein CLD_3619 1056633 - 1056824 + | hypothetical protein TERM 1575 1056896 - 1056873 - f 77 -7 -4.45517 | opp_overlap 1056865 AAAGTATTTATAAAA TTATTTATAA TTGT TTATAAATAA GGAACATTATTTTTA CLD_3618 1056982 - 1057434 + | hypothetical protein CLD_3617 1057491 - 1057835 + | hypothetical protein CLD_3616 1057904 - 1058452 + | acetyltransferase CLD_3615 1058502 - 1058894 + | hypothetical protein cobI 1058985 - 1059701 + | precorrin-2 C20-methyltransferase TERM 1576 1059741 - 1059717 - f 81 -10.3 -2.52759 | opp_overlap 1059724, overlap 1059709 1059716 1059724 AATATATTTATTAAT TTAATAAGATA ATT TATCTTATTAA GGCTGTAGAACATAT cobM 1059989 - 1060747 + | precorrin-4 C11-methyltransferase TERM 1577 1060990 - 1060980 - g 88 -4 -5.66989 | opp_overlap 1060980 GAAATAGTAAAAAAA TCTT TTC AAGA TTATGATGCAATAAT cbiG 1060752 - 1061846 + | cobalamin biosynthesis protein CbiG cobJ 1062127 - 1062858 + | precorrin-3B C17-methyltransferase TERM 1578 1063700 - 1063690 - g 75 -4 -5.24003 | overlap 1063692 AATAAAAAGGAAAAA GATA AAT TATC AAAGAGAATTTAATA cobK 1062992 - 1063759 + | precorrin-6x reductase CLD_3609 1063839 - 1064327 + | hypothetical protein TERM 1579 1064387 - 1064373 - f 70 -4.4 -4.98436 | opp_overlap 1064375 TTAATATTATAAAAA TATATA AAG TATATA CTTAAGATATGGTGA cbiK 1064503 - 1065285 + | anaerobic sirohydrochlorin cobaltochelatase TERM 1580 1065387 - 1065351 - g 74 -7.5 -3.93026 | gap 1, opp_overlap 1065351 1065350 1065353, overlap 1065355 AATACTTCAAGGAAA TTTAGGGGAA-AAACC TGTGTT GGTTTCTTCCCCTATA AATTTATATACATGC TERM 1581 1065353 - 1065385 + G 76 -10.1 -2.73797 | gap 1, opp_overlap 1065351 1065355, overlap 1065351 1065350 TACTTCAAGGAAATT TAGGGGAA-AAACC TGTGTT GGTTTCTTCCCCTA TAAATTTATATACAT TERM 1582 1065438 - 1065427 - g 74 -3 -5.37593 | overlap 1065435 TTTGAAAGCAAAAAA GAAA AGAA TTTC TATAGAAACATTAAA TERM 1583 1065893 - 1065875 - g 74 -3.2 -5.40625 | AGAGTATAGAAAAAA GAAATATT AAA AATATATC ACAGATTTCAGAGGA CLD_3607 1065298 - 1066137 + | putative kinase cobO 1066423 - 1066944 + | cob(I)alamin adenosyltransferase CLD_3605 1067197 - 1067886 + | Crp/FNR family transcriptional regulator TERM 1584 1067879 - 1067900 + F 100 -10.3 -6.02914 | opp_overlap 1067879 CAAAGTTTTTTAAGA GTATGTGAT TTTC ATCACATAC TTTTTTTTGTATGCA TERM 1585 1067900 - 1067879 - f 85 -10.3 -3.03635 | opp_overlap 1067879 CAAAGTTTTTTAAGA GTATGTGAT TTTC ATCACATAC TTTTTTTTGTATGCA CLD_3604 1067976 - 1068752 + | formate/nitrite transporter family protein asrA 1068756 - 1069787 + | anaerobic sulfite reductase, subunit A asrB 1069774 - 1070571 + | anaerobic sulfite reductase, subunit B arsC 1070584 - 1071549 + | anaerobic sulfite reductase, subunit C TERM 1586 1071637 - 1071603 - f 88 -8.1 -4.83759 | gap 1, opp_overlap 1071603 AATTAAATGTAAAAA GCAGTGTATTTTCATA GAGC TTTG-AAATACACTGC TTTTTGTTTTGAAAT TERM 1587 1071603 - 1071637 + F 100 -8.1 -5.46706 | gap 1, opp_overlap 1071603 AATTAAATGTAAAAA GCAGTGTATTTTCATA GAGC TTTG-AAATACACTGC TTTTTGTTTTGAAAT TERM 1588 1071845 - 1071833 - f 70 -3.5 -5.27923 | overlap 1071821 GAATTTTACAAAAAA TTATA AAA TATAA ATACATTTACAGTAT CLD_3600 1071905 - 1072927 + | molybdopterin biosynthesis protein CLD_3599 1073829 - 1073692 - | hypothetical protein TERM 1589 1073772 - 1073730 - G 100 -19.5 -4.25104 | opp_overlap 1073730 TTTTTCTTATTAAAA GAGGGTGTCTCAAATAGAT ATTAA ATCTATTTGAGACATCCTC TTTTTTAGTTAAATC TERM 1590 1073730 - 1073772 + g 100 -21.7 -5.28481 | opp_overlap 1073730 TTTTTCTTATTAAAA GAGGGTGTCTCAAATAGAT ATTAA ATCTATTTGAGACATCCTC TTTTTTAGTTAAATC TERM 1591 1074237 - 1074225 - H 85 -3.5 -6.28401 | TAAAAAATAAAAAAA TTATA AAA TATAA TGAACTTAATAAATT TERM 1592 1074620 - 1074630 + G 72 -5.4 -4.69415 | TATAGAAGCACTCAT CTAG CTG CTAG TTTCTTTATGTTAAT CLD_3598 1074266 - 1075285 + | hypothetical protein CLD_3597 1075306 - 1076193 + | ABC transporter, ATP-binding protein CLD_3596 1076197 - 1076973 + | hypothetical protein TERM 1593 1077207 - 1077225 + F 83 -3.9 -5.9362 | CTACTAAAGCTTATT TACATGT TTATT ACGTGTA TTTTTTTATGTTTTC CLD_3595 1077623 - 1078345 + | DNA-binding response regulator TERM 1594 1078879 - 1078851 - g 78 -6.9 -4.62168 | ATCCAAATTATAAAA TCTGCTACAATAA TAA TTATTATAGTAGA TGGGATTATAGCTTT CLD_3594 1078335 - 1079756 + | sensor histidine kinase CLD_3593 1080942 - 1080172 - | iron chelate ABC transporter ATP-binding protein CLD_3592 1082010 - 1080943 - | iron chelate ABC transporter permease protein TERM 1595 1081948 - 1082002 + g 100 -13.6 -3.91564 | gap 1, opp_overlap 1081960, overlap 1081956 1081960 AAACAGGGCTATAAT TAATAGAATAAATTTTAAAGTGCAA TTATTT TTGCACTTTAAAATTTGTT-TATTA TTATTCATTCTTATC TERM 1596 1081956 - 1081995 + g 100 -13.3 -4.58786 | opp_overlap 1081960, overlap 1081948 1081960 CTATAATTAATAGAA TAAATTTTAAAGTGCAA TTATTT TTGCACTTTAAAATTTG TTTATTATTATTCAT TERM 1597 1081991 - 1081960 - G 100 -11.9 -4.48583 | opp_overlap 1081956 1081948 1081960 AATTAATAGAATAAA TTTTAAAGTGCAA TTATTT TTGCACTTTAAAA TTTGTTTATTATTAT TERM 1598 1081960 - 1081991 + g 100 -11.9 -4.79953 | opp_overlap 1081960, overlap 1081956 1081948 AATTAATAGAATAAA TTTTAAAGTGCAA TTATTT TTGCACTTTAAAA TTTGTTTATTATTAT CLD_3591 1083045 - 1082023 - | putative iron chelate uptake ABC transporter, solute-binding protein TERM 1599 1082945 - 1082969 + g 70 -5 -4.63218 | GATTGTTCAGTTTTA GTACTGTCAC TACTT GTGCTAGTAC TTTTATTAGAGCAAC TERM 1600 1083545 - 1083516 - R 82 -5.8 -5.61881 | opp_overlap 1083516 1083518 GGGTAAAAATAAAAA CCCCAGTAAAAA ATAAGA TGTTTACTGGAG TTTTTAGGTTAAATT dhaKL 1085363 - 1083603 - | dihydroxyacetone kinase, subunit I/II dhaD 1086504 - 1085374 - | glycerol dehydrogenase TERM 1601 1086606 - 1086622 + r 86 -4.5 -5.95946 | opp_overlap 1086606 1086609, overlap 1086595 TCCATGACAAAAAAT TATGATT AAA AATCGTA TTTTTTTGTTGTTGA TERM 1602 1086762 - 1086790 + r 93 -9.2 -4.57073 | opp_overlap 1086762 AAGAAAATAAAAAAA GATTTAATTTTA ATATA TAAAATTAAATC TTTTTAGAGACAATG TERM 1603 1086790 - 1086762 - R 100 -9.2 -6.17669 | opp_overlap 1086762 AAGAAAATAAAAAAA GATTTAATTTTA ATATA TAAAATTAAATC TTTTTAGAGACAATG CLD_3588 1087858 - 1086821 - | AraC family transcriptional regulator TERM 1604 1088120 - 1088102 - H 73 -3.2 -5.52384 | TGCCCATTAAAAAAA TCTATATA CAT TATATTGA AATTAATATTTATAG CLD_3587 1088200 - 1088664 + | acetyltransferase CLD_3586 1088766 - 1089209 + | acetyltransferase CLD_3585 1089362 - 1089955 + | hypothetical protein CLD_3584 1090073 - 1090516 + | hypothetical protein CLD_3583 1090638 - 1091483 + | aldo/keto reductase family oxidoreductase CLD_3582 1091584 - 1091907 + | TfoX domain-containing protein CLD_3581 1091953 - 1092807 + | acetyltransferase TERM 1605 1092911 - 1092936 + F 90 -7 -5.27779 | opp_overlap 1092911 AATACATTTATATTA GCTTTATGAT GAAAAA GTCATAAAGC TTTTTTAATATTGAC TERM 1606 1092955 - 1092997 + F 79 -10.2 -2.74019 | opp_overlap 1092955 1092957 1092959 1092981 1092987 1092988, overlap 1092955 1092957 1092959 1092987 1092996 TTTAATATTGACATA TACAGCTAGACTGTATAT AGTAGAA ATATATAGTCTAACTGTA TAGTTAGAAATTATA TERM 1607 1092997 - 1092955 - f 82 -10.2 -2.9518 | opp_overlap 1092955 1092955 1092957 1092959 1092987 1092996, overlap 1092957 1092959 1092981 1092987 1092988 TTTAATATTGACATA TACAGCTAGACTGTATAT AGTAGAA ATATATAGTCTAACTGTA TAGTTAGAAATTATA TERM 1608 1092995 - 1092957 - f 71 -8.4 -3.02626 | opp_overlap 1092955 1092957 1092955 1092959 1092987, overlap 1092955 1092959 1092981 1092987 1092988 TAATATTGACATATA CAGCTAGACTGTATAT AGTAGAA ATATATAGTCTAACTG TATAGTTAGAAATTA CLD_3580 1093028 - 1093342 + | PadR family transcriptional regulator TERM 1609 1093700 - 1093717 + G 91 -4.9 -5.84432 | overlap 1093694 ATTATCTGATCATTC CATGATG TTTG CATTATG TTTTTTTGTATTGTC CLD_3579 1093359 - 1093973 + | hypothetical protein TERM 1610 1093981 - 1093965 - f 70 -3.8 -5.25805 | opp_overlap 1093975 AATAAAGGGAAAAAA TCTAAT TAAAG ATTAGA AATTTAATCATTTAG CLD_3578 1094115 - 1094297 + | hypothetical protein CLD_3577 1094353 - 1094892 + | putative signal peptidase CLD_3576 1094928 - 1095419 + | hypothetical protein TERM 1611 1095488 - 1095534 + T 93 -9.7 -4.60808 | opp_overlap 1095493, overlap 1095493 AACCGCATTTAATTT TAAAACCTATCCTAAGCATTG CAATA TAAGGCTTAAGATAGGTTTTG TTTATGTTTTTCTGA TERM 1612 1095493 - 1095529 + T 87 -7.4 -5.15682 | opp_overlap 1095493, overlap 1095488 CATTTAATTTTAAAA CCTATCCTAAGCATTG CAATA TAAGGCTTAAGATAGG TTTTGTTTATGTTTT TERM 1613 1095529 - 1095493 - T 84 -8.9 -4.19953 | opp_overlap 1095493 1095488 CATTTAATTTTAAAA CCTATCCTAAGCATT GCAATAT AAGGCTTAAGATAGG TTTTGTTTATGTTTT TERM 1614 1095585 - 1095561 - T 84 -8.7 -4.2687 | opp_overlap 1095561, overlap 1095554 1095575 CTGAAAAATCATAAA TGGTTGGAAAA ATT TTTTTCAACCA TTGTAAAATCAAATG TERM 1615 1095561 - 1095585 + T 93 -10.9 -3.33162 | opp_overlap 1095561 1095554 1095575 CTGAAAAATCATAAA TGGTTGGAAAA ATT TTTTTCAACCA TTGTAAAATCAAATG TERM 1616 1095900 - 1095932 + T 71 -8.4 -3.0792 | ACAGGACGTTTACTT AGCTCTGTTGCCAC AAGAC GTGGCATTAGAGCG TTAGCTGAAATATTA add 1097041 - 1096034 - | adenosine deaminase TERM 1617 1097804 - 1097785 - H 71 -6.6 -4.09586 | overlap 1097783 ATATAAGGAAAAAGA TTAAGATT AATT AATCTTAA AATAAATGTGTGAAC TERM 1618 1098531 - 1098498 - g 79 -7.1 -4.48073 | gap 1 TGAAAAAAATAAGAA TGAAATAATAAA-TCT TAA AGAATCTATTATTTCA ATGAATCGAAACATG CLD_3574 1097926 - 1100094 + | putative phage infection protein CLD_3573 1100121 - 1102280 + | putative phage infection protein TERM 1619 1102430 - 1102398 - T 72 -8.4 -3.20878 | TAATATTTAAGCTAA TGCTCTAATGCCAC GTCCT GTGGCAACAGAGCT AAGTAAACGTCCTGT TERM 1620 1102627 - 1102601 - T 100 -16.8 -3.60098 | opp_overlap 1102601 1102604 1102609, overlap 1102604 1102609 ACTCTGTACTCTAAA TAAGGAAAGTGC GTG GCACTTTCCTTA TAATATGTAAAAATA TERM 1621 1102601 - 1102627 + T 100 -16.8 -2.69468 | opp_overlap 1102601 1102604 1102609, overlap 1102604 1102609 ACTCTGTACTCTAAA TAAGGAAAGTGC GTG GCACTTTCCTTA TAATATGTAAAAATA TERM 1622 1102604 - 1102624 + T 100 -14.1 -3.49777 | opp_overlap 1102601 1102604 1102609, overlap 1102601 1102609 CTGTACTCTAAATAA GGAAAGTGC GTG GCACTTTCC TTATAATATGTAAAA TERM 1623 1102624 - 1102604 - T 100 -14.1 -3.9392 | opp_overlap 1102604 1102601 1102609, overlap 1102601 1102609 CTGTACTCTAAATAA GGAAAGTGC GTG GCACTTTCC TTATAATATGTAAAA TERM 1624 1102609 - 1102619 + T 71 -6.8 -4.03179 | opp_overlap 1102604 1102601 1102609, overlap 1102604 1102601 CTCTAAATAAGGAAA GTGC GTG GCAC TTTCCTTATAATATG TERM 1625 1102619 - 1102609 - T 71 -6.8 -4.14764 | opp_overlap 1102609 1102604 1102601, overlap 1102604 1102601 CTCTAAATAAGGAAA GTGC GTG GCAC TTTCCTTATAATATG CLD_3572 1102995 - 1102693 - | hypothetical protein TERM 1626 1105200 - 1105188 - g 73 -3.5 -5.20216 | opp_overlap 1105188 TAGAGGATCAAAAAA TAAAA AGC TTTTA TCCTTAGATTTAGAT recQ 1103872 - 1106001 + | ATP-dependent DNA helicase RecQ TERM 1627 1106449 - 1106430 - g 93 -4.3 -6.22802 | CTGTACAAAAAAAAA CCTACAA AAAATG TTGCAGG GCGAAATAGGATCAA TERM 1628 1106501 - 1106479 - g 82 -6.4 -5.31545 | AATAAGATGAAAAAA TCTTTAGC AGTAAAG GCTAAAGA AGAAAATATAGATGA CLD_3570 1106173 - 1106604 + | ferritin-like diiron domain-containing protein TERM 1629 1106690 - 1106652 - T 84 -9 -4.31412 | opp_overlap 1106649 1106652 AAATATTTACTAAAA GAGGGTGTATGAAAATAA ATT TAATTTTGATGCACCCTC TAAATTTTATCCGAT TERM 1630 1106652 - 1106690 + T 85 -11.2 -2.80345 | opp_overlap 1106652, overlap 1106649 AAATATTTACTAAAA GAGGGTGTATGAAAATAA ATT TAATTTTGATGCACCCTC TAAATTTTATCCGAT TERM 1631 1106828 - 1106789 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 1106796 1106826, overlap 1106792 1106793 1106795 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 1632 1106823 - 1106793 - T 79 -9.8 -2.75769 | opp_overlap 1106796, overlap 1106792 1106789 1106795 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 1633 1106796 - 1106820 + T 90 -10.1 -3.71552 | opp_overlap 1106795 1106793 1106792 1106789 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT CLD_3569 1107430 - 1106885 - | phosphodiesterase TERM 1634 1108078 - 1108068 - g 79 -5.4 -5.26316 | GGAGGTTATAAAAAA TGAG TAG CTCA CAAAAGAATATACTA CLD_3568 1108067 - 1108450 + | response regulator TERM 1635 1108561 - 1108511 - f 95 -11.6 -3.45134 | gap 1, opp_overlap 1108511 1108513, overlap 1108513 1108529 TCAAGTAACCTATAA TATACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTATT ATTTTGATTGAAAGA TERM 1636 1108511 - 1108562 + F 81 -7.8 -4.4078 | gap 2, opp_overlap 1108511 1108513 1108529, overlap 1108513 TCAAGTAACCTATAA TA-TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTATTA TTTTGATTGAAAGAA TERM 1637 1108559 - 1108513 - f 100 -14.2 -3.29216 | gap 1, opp_overlap 1108513 1108511, overlap 1108511 1108529 AAGTAACCTATAATA TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTA TTATTTTGATTGAAA TERM 1638 1108513 - 1108559 + F 100 -12 -4.32402 | gap 1, opp_overlap 1108511 1108513 1108529, overlap 1108511 AAGTAACCTATAATA TACACCTTTCAT-ATAATGCT GTTAAA AGCACTATAATGAAAGGTGTA TTATTTTGATTGAAA TERM 1639 1109262 - 1109243 - g 75 -7.2 -4.15664 | opp_overlap 1109243 AAATCTATAGATAAA GCTTTAGA GCTT CCTAAAGC TTATCCCTCTAAGAA CLD_3567 1108610 - 1111039 + | hypothetical protein TERM 1640 1111072 - 1111052 - f 78 -4.2 -5.51353 | TAAAAATAAGAAAAA TTTATTTT AGATA AAAATAAA AATGACTATAAAACA TERM 1641 1111145 - 1111180 + F 100 -9.2 -5.79595 | opp_overlap 1111140 1111147 AGCGAAATAATAAAA GGTAGGATAGCATTTT ATTA GAAGTGCTATTCTATC TTTTTTGTTTTAGAG CLD_3566 1111487 - 1111702 + | hypothetical protein CLD_3565 1111704 - 1112525 + | hypothetical protein TERM 1642 1113116 - 1113104 - g 70 -3.5 -5.05153 | AGTTTAAAAAACAAA TTAAA AAA TTTAA AGGATGGTGAATAAA CLD_3564 1112525 - 1113130 + | putative anaerobic ribonucleoside-triphosphate reductase activating protein CLD_3563 1113132 - 1114805 + | AAA family ATPase TERM 1643 1115293 - 1115283 - g 70 -5.4 -4.60041 | ATTTACTTTTAAAAA CTCT TAA AGAG TGCGGAACTTATCCT CLD_3562 1114820 - 1115590 + | hypothetical protein TERM 1644 1115680 - 1115652 - f 76 -6.2 -4.86001 | opp_overlap 1115652 ATTATTTTATAAAAA GATATACACAAA ATAAA TTTCTGTATATC TTTTTGCTATTGTTA TERM 1645 1115652 - 1115680 + F 78 -6.2 -4.93316 | opp_overlap 1115652 ATTATTTTATAAAAA GATATACACAAA ATAAA TTTCTGTATATC TTTTTGCTATTGTTA TERM 1646 1116230 - 1116243 + G 73 -8.1 -3.53012 | ATGCCAATTTTAGAT GCAGC TTCT GCTGC TTTAGAAGGAACGGC TERM 1647 1116898 - 1116882 - g 85 -5.9 -5.35222 | opp_overlap 1116882, overlap 1116884 AAAATGTAGAAAAAA TACCTTT TAA AAAGGCA GTTATAGCATGGTTA TERM 1648 1116896 - 1116884 - g 72 -6.3 -4.28383 | opp_overlap 1116882, overlap 1116882 AATGTAGAAAAAATA CCTTT TAA AAAGG CAGTTATAGCATGGT TERM 1649 1117202 - 1117182 - g 81 -8.3 -4.09963 | opp_overlap 1117179, overlap 1117184 CTGCAATAACAATAA TAGCCATAG TAG CTATGGCAA AGATTATGGGATATA TERM 1650 1117200 - 1117184 - g 90 -10.9 -3.63645 | opp_overlap 1117179, overlap 1117182 GCAATAACAATAATA GCCATAG TAG CTATGGC AAAGATTATGGGATA lctP 1116071 - 1117594 + | L-lactate permease TERM 1651 1118323 - 1118313 - g 70 -5.4 -4.57073 | opp_overlap 1118308 1118313 TATGCCGCTGAAAAA GCTA ATT TAGC TTTTATATTAAATGT TERM 1652 1118313 - 1118323 + G 72 -5.4 -4.69326 | opp_overlap 1118313, overlap 1118308 TATGCCGCTGAAAAA GCTA ATT TAGC TTTTATATTAAATGT TERM 1653 1118861 - 1118849 - g 74 -7.7 -3.78026 | GCTAAAGGGAAAAGA CGCTA AAG TAGCG GTAATACCTGATGGT CLD_3560 1117623 - 1118897 + | hypothetical protein CLD_3559 1118940 - 1119728 + | electron transfer flavoprotein, beta subunit/FixA family protein TERM 1654 1120291 - 1120277 - g 70 -8.6 -2.57252 | overlap 1120276 1120274 CAACAATAGGAAGAT CTCTTG CAC CAAGAG TAGCAGCTAGATTTA CLD_3558 1119760 - 1120962 + | electron transfer flavoprotein, alpha subunit/FixB family protein CLD_3557 1121023 - 1122420 + | putative glycolate oxidase TERM 1655 1122448 - 1122490 + F 100 -10.9 -5.65927 | opp_overlap 1122448 TTTTAGAGTGAAAAA TGGAGAAGCACATGAAT ATTTTTTTA ATTCATGTGTTTCTTCA TTTTTTATTTGCATG TERM 1656 1122490 - 1122448 - f 77 -6.5 -4.70659 | opp_overlap 1122448 TTTTAGAGTGAAAAA TGGAGAAGCACATGAAT ATTTTTTTA ATTCATGTGTTTCTTCA TTTTTTATTTGCATG CLD_3556 1122689 - 1122808 + | hypothetical protein TERM 1657 1122831 - 1122853 + F 78 -5.6 -5.1287 | opp_overlap 1122850, overlap 1122833 AGAATTCAAACTATT TATGTCTTTG TTT CGAAGACAAA TTTTTTGAGTATAGA CLD_3555 1122935 - 1123843 + | putative lipoprotein TERM 1658 1123860 - 1123885 + F 73 -3.3 -5.48063 | opp_overlap 1123860, overlap 1123852 ATTTATTTAGAAGAA GCTATTTGAAT TATT ATTCTTATAGC TTTTTTCTATTACAT CLD_3554 1124037 - 1124507 + | MarR family transcriptional regulator CLD_3553 1124509 - 1125054 + | putative cyclase TERM 1659 1125287 - 1125335 + T 70 -4.2 -5.05079 | gap 1, opp_overlap 1125280 1125296, overlap 1125296 GATTTAAATTAATAA TATTAAAAACCGCTAATTAAATA TTAA TAGTTAATTAGCGG-TTGTACTA TTTTTATATAATTCT TERM 1660 1125296 - 1125327 + T 95 -11.8 -3.65068 | opp_overlap 1125296, overlap 1125287 TAATAATATTAAAAA CCGCTAATTAAATA TTAA TAGTTAATTAGCGG TTGTACTATTTTTAT TERM 1661 1125327 - 1125296 - T 100 -11.8 -4.93316 | opp_overlap 1125296 1125287 TAATAATATTAAAAA CCGCTAATTAAATA TTAA TAGTTAATTAGCGG TTGTACTATTTTTAT CLD_3552 1126541 - 1125357 - | putative aspartate aminotransferase TERM 1662 1126781 - 1126734 - R 100 -10.2 -4.45083 | opp_overlap 1126739 TTCATATTTATAAAA GCTCCGTCTATTTTAAATATAA TTTT TTATATTTAAAATAGACTTTGC TTTCATGTGTAGATA TERM 1663 1126739 - 1126776 + r 100 -16.1 -4.13341 | opp_overlap 1126734 ATTTATAAAAGCTCC GTCTATTTTAAATATAA TTTT TTATATTTAAAATAGAC TTTGCTTTCATGTGT TERM 1664 1127080 - 1127043 - R 74 -6 -4.56802 | opp_overlap 1127035, overlap 1127035 AAAGAAATATTAAAA TTATTTAATATTAATA TATGCG CACTAATATTAAATAA TGAAAGTGGTTTATT TERM 1665 1127426 - 1127395 - R 75 -8.8 -3.28912 | opp_overlap 1127391 1127391, overlap 1127396 1127398 TTATATTTATATTAA TTAGGTAGCAAGCT GTTA AGTTTGCTACCTAG TCCAATTATGAATAA TERM 1666 1127425 - 1127396 - R 86 -12.3 -2.57026 | opp_overlap 1127391 1127391, overlap 1127395 1127398 TATATTTATATTAAT TAGGTAGCAAGCT GTTA AGTTTGCTACCTA GTCCAATTATGAATA TERM 1667 1127423 - 1127398 - R 82 -10.5 -2.82023 | opp_overlap 1127391 1127391, overlap 1127396 1127395 TATTTATATTAATTA GGTAGCAAGCT GTTA AGTTTGCTACC TAGTCCAATTATGAA CLD_3551 1128068 - 1127490 - | putative cyclase TERM 1668 1128149 - 1128094 - H 75 -7.8 -3.87149 | opp_overlap 1128094 1128095 1128095, overlap 1128095 1128097 1128131 TCCATTAAATTCAAA TTAGTTTCCTAGGAAACTACTTAATG GTAT CACAAAATAGTTTCCTTGTAAACTAT TTAGATATAATTGAA TERM 1669 1128148 - 1128095 - H 85 -11.3 -2.91807 | opp_overlap 1128095 1128094 1128095, overlap 1128094 1128097 1128131 CCATTAAATTCAAAT TAGTTTCCTAGGAAACTACTTAATG GTAT CACAAAATAGTTTCCTTGTAAACTA TTTAGATATAATTGA TERM 1670 1128146 - 1128097 - H 78 -9.5 -3.00419 | opp_overlap 1128095 1128094 1128095, overlap 1128095 1128094 1128131 ATTAAATTCAAATTA GTTTCCTAGGAAACTACTTAATG GTAT CACAAAATAGTTTCCTTGTAAAC TATTTAGATATAATT TERM 1671 1128429 - 1128397 - g 74 -6.5 -4.43909 | opp_overlap 1128399 AGTTTAACAAAATAA CAGATAATGATAT AAAGGGG ATATCTTTATCTG AGTTCCACGTTATAG CLD_3550 1128228 - 1128752 + | MarR family transcriptional regulator CLD_3549 1129055 - 1129876 + | MerR family transcriptional regulator TERM 1672 1130338 - 1130326 - g 71 -5.5 -4.42851 | CTAATAAATTTAAAA GCTCC ATT GAAGC AATAACTACAAGAGT CLD_3548 1130091 - 1130789 + | B3/4 domain-containing protein TERM 1673 1130895 - 1130855 - T 95 -12.8 -3.60094 | opp_overlap 1130855 1130862, overlap 1130849 TAGATATAAGTACAA GCATAAGGAGATTAGGGT AGATA ATCCTAATCTCTTTATGC TATATTGGAGATGCA TERM 1674 1130855 - 1130895 + T 100 -17.2 -3.07895 | opp_overlap 1130855 1130849, overlap 1130862 TAGATATAAGTACAA GCATAAGGAGATTAGGGT AGATA ATCCTAATCTCTTTATGC TATATTGGAGATGCA TERM 1675 1130862 - 1130888 + T 95 -10.3 -4.06505 | opp_overlap 1130855 1130849, overlap 1130855 AAGTACAAGCATAAG GAGATTAGGGT AGATA ATCCTAATCTC TTTATGCTATATTGG aspS 1132354 - 1131065 - | aspartyl-tRNA synthetase TERM 1676 1132408 - 1132377 - H 95 -9.4 -4.87133 | opp_overlap 1132376, overlap 1132380 ACCTCCTAAATAAAA TAAGCCCCTTGAGT AAAA ACCCAAGGGGCAAA ATAATCTGCGGTACC TERM 1677 1132405 - 1132380 - H 100 -15.5 -4.54026 | opp_overlap 1132376, overlap 1132377 TCCTAAATAAAATAA GCCCCTTGAGT AAAA ACCCAAGGGGC AAAATAATCTGCGGT TERM 1678 1132526 - 1132500 - H 100 -10.9 -5.36441 | opp_overlap 1132500, overlap 1132519 TTCCTATATAAAAAA GCCTTCACCCC ATATA GGAGTGAAAGC TTACATTCACGGTAC TERM 1679 1133119 - 1133109 - g 76 -5.4 -5.16572 | AGTTAACTGAAAAAA TTGC CAA GCAA ATTGCCCAGGGAATA TERM 1680 1133372 - 1133362 - g 82 -4 -5.61824 | CAAAATGGAAAAAAA TCTT AGA AAGA TAAAAGATACAGAAA CLD_3546 1132904 - 1133461 + | hypothetical protein TERM 1681 1133873 - 1133884 + G 83 -2.2 -5.86965 | TATTTTGGACGTGCT GCTG CAAT TAGC TTTTTTTTAATACCT CLD_3545 1133465 - 1134028 + | CDP-alcohol phosphatidyltransferase family protein CLD_3544 1134212 - 1134874 + | TetR family transcriptional regulator CLD_3543 1134890 - 1135378 + | hypothetical protein TERM 1682 1135475 - 1135426 - T 75 -6.7 -4.48869 | gap 1, opp_overlap 1135428 1135430 1135432, overlap 1135428 1135430 TAAAAATAATATAAA GATAGGGCTGTTTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACCATT AATTTATATCTATTT TERM 1683 1135428 - 1135473 + T 70 -7.1 -3.68084 | gap 1, opp_overlap 1135428 1135426 1135430, overlap 1135430 1135432 AAAATAATATAAAGA TAGGGCTGTTTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACCA TTAATTTATATCTAT TERM 1684 1135473 - 1135428 - T 84 -9.3 -3.80533 | gap 1, opp_overlap 1135428 1135430 1135432, overlap 1135426 1135430 AAAATAATATAAAGA TAGGGCTGTTTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACCA TTAATTTATATCTAT TERM 1685 1135471 - 1135430 - T 82 -9.7 -3.44851 | gap 1, opp_overlap 1135430 1135428 1135432, overlap 1135428 1135426 AATAATATAAAGATA GGGCTGTTTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCAC CATTAATTTATATCT TERM 1686 1135430 - 1135472 + T 76 -9.5 -2.79766 | gap 2, opp_overlap 1135428 1135426 1135430, overlap 1135428 1135432 AATAATATAAAGATA GG-GCTGTTTCAAAATA-GCT TTA ATCGTATTTTGAAACAGCACC ATTAATTTATATCTA CLD_3542 1136174 - 1135485 - | HAD family hydrolase CLD_3541 1136488 - 1137177 + | cyclic nucleotide-binding domain-containing protein TERM 1687 1137196 - 1137169 - T 77 -7.2 -4.53705 | AACTTTTATATAAAA TCCTTATAATAT TAGA ATATTGTAAGGA ATATGAGTAAAGGTG TERM 1688 1137287 - 1137268 - T 73 -6.6 -4.2416 | opp_overlap 1137266 1137268 TAATCCAATAAAGAA TTTCAATA ATAT TATTGAAA TATGTTATAAAATAA CLD_3540 1138071 - 1137487 - | DJ-1/PfpI family protein TERM 1689 1138401 - 1138390 - g 74 -3 -5.47218 | GTTTAGGTAAAAAAA TAGT TTTA ACTA ATGTAGGTCAAAAGT CLD_3539 1138227 - 1139120 + | LysR family transcriptional regulator CLD_3538 1139174 - 1139959 + | sigma-70 family RNA polymerase sigma factor CLD_3537 1140052 - 1140498 + | hypothetical protein TERM 1690 1140542 - 1140576 + TF 90 -5.9 -5.86976 | opp_overlap 1140545, overlap 1140545 ATTAAAAGATAGGAG AAAGTAGAATCTTTA AATAA TAGGGATTCTACTTC TTTTTTATTTTATAA TERM 1691 1140545 - 1140573 + TF 90 -7.6 -4.94109 | opp_overlap 1140545, overlap 1140542 AAAAGATAGGAGAAA GTAGAATCTTTA AATAA TAGGGATTCTAC TTCTTTTTTATTTTA CLD_3536 1140686 - 1140570 - | hypothetical protein TERM 1692 1141076 - 1141090 + GH 73 -5.7 -4.57755 | TAGCAGATACTTTAG GCTCA CAATA TGAGC TTTTATATCGTCCAT CLD_3535 1140655 - 1141413 + | hypothetical protein TERM 1693 1141426 - 1141457 + FH 100 -17.4 -3.62522 | opp_overlap 1141419, overlap 1141427 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCACTGAAGC TTATTAACAGAATTC TERM 1694 1141462 - 1141501 + FH 73 -8.8 -2.90615 | gap 1, opp_overlap 1141419 1141470, overlap 1141466 1141467 1141469 CCCACTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 1695 1141467 - 1141497 + FH 79 -9.8 -2.75769 | opp_overlap 1141470, overlap 1141466 1141462 1141469 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1696 1141494 - 1141470 - fH 90 -10.1 -3.71552 | opp_overlap 1141469 1141467 1141466 1141462 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1697 1141692 - 1141731 + FH 91 -10.3 -3.68351 | opp_overlap 1141688 1141692 TTTTAAAAGAATGGA GGGTGTCTCAAAATA AAATTAAAGC TATTTTGAGATACCC TTTAAGTACTAAAAA TERM 1698 1141731 - 1141692 - fH 72 -8.8 -2.75865 | opp_overlap 1141692, overlap 1141688 TTTTAAAAGAATGGA GGGTGTCTCAAAATAA AATTAAAG CTATTTTGAGATACCC TTTAAGTACTAAAAA CLD_3534 1142049 - 1142258 + | putative ferrous iron transport protein A CLD_3533 1142275 - 1142496 + | ferrous iron transport protein A feoB 1142528 - 1144684 + | ferrous iron transport protein B TERM 1699 1144687 - 1144677 - f 71 -8.2 -3.00574 | overlap 1144674 GGACAGAAAATATTA GCGC ATA GCGC GTAAGGAGATAATAA CLD_3531 1144705 - 1144851 + | hypothetical protein TERM 1700 1144864 - 1144912 + F 100 -9.2 -5.70522 | gap 1, opp_overlap 1144864 1144859 TAAAAAGGCATAAAA GAATCTATTTTCAAGTGCTTAGC TTTA GCAAA-TGCTTGAAGATAGATTC TTTTTTATTGTTCTT TERM 1701 1145426 - 1145416 - g 82 -4 -5.55698 | TATAATTTAAAAAAA GTAA AGA TTAC TATAAATACCTTAAT TERM 1702 1145730 - 1145740 + G 72 -5.4 -4.74013 | opp_overlap 1145730, overlap 1145725 CTATGCTGGTTTAAA TTCC TCA GGAA TTTTATGTGTTTCAA CLD_3530 1145083 - 1145772 + | hypothetical protein CLD_3529 1146371 - 1145934 - | acetyltransferase TERM 1703 1146491 - 1146510 + H 70 -8 -3.31598 | opp_overlap 1146476 1146491, overlap 1146494 1146498 TTATTTTCAGAAAAA CAATTTGT ATTC ACAAATTG TTAATATACCTTTAT TERM 1704 1146510 - 1146491 - H 86 -8 -4.84359 | opp_overlap 1146491 1146494 1146498, overlap 1146476 TTATTTTCAGAAAAA CAATTTGT ATTC ACAAATTG TTAATATACCTTTAT CLD_3528 1146838 - 1147638 + | D-alanyl-D-alanine carboxypeptidase family protein tlp 1147936 - 1148163 + | small, acid-soluble spore protein tlp CLD_3526 1148381 - 1148259 - | hypothetical protein CLD_3525 1148973 - 1148350 - | TetR family transcriptional regulator TERM 1705 1149080 - 1149057 - H 81 -7 -4.73448 | ATATATAGGGAAAAA TTTTATTATT TATA AATAATAAAA TTGACATTAATATAA TERM 1706 1149130 - 1149119 - H 70 -4.4 -5.02502 | TATACTAGATAAAAA TGAC CGTG GTCA TAAATGTTTATGATA CLD_3524 1149164 - 1150354 + | M24 family peptidase TERM 1707 1150605 - 1150552 - f 76 -5.9 -4.76274 | gap 1, opp_overlap 1150558 1150592, overlap 1150555 1150556 TAAATTAATAGAAAA CAACT-ATTTTAAAGATATTATTA CAAATCT TCATAATATCTTTAAAATAAATTG ATATAATAATTTTAA TERM 1708 1150601 - 1150555 - f 81 -7.8 -4.45115 | opp_overlap 1150558 1150592, overlap 1150552 1150556 ATTAATAGAAAACAA CTATTTTAAAGATATTATTA CAAATCT TCATAATATCTTTAAAATAA ATTGATATAATAATT TERM 1709 1150600 - 1150556 - f 75 -9.1 -3.25442 | opp_overlap 1150558 1150592, overlap 1150555 1150552 TTAATAGAAAACAAC TATTTTAAAGATATTATTA CAAATCT TCATAATATCTTTAAAATA AATTGATATAATAAT TERM 1710 1150648 - 1150627 - f 71 -5.3 -4.68655 | opp_overlap 1150627 1150624 1150647 TAATTTTAAAATAAA TAGTAAATC AATA AATTTACTA TTATTTTTAGATAAT TERM 1711 1151173 - 1151201 + G 79 -7.5 -4.36914 | opp_overlap 1151176 1151178, overlap 1151174 TGAGTTTGATATACT ATATACCCTTGTT TCA AACAAGGGTAAAG TTTTATCAAGAGAAC TERM 1712 1151174 - 1151200 + G 87 -11 -3.21934 | opp_overlap 1151176 1151178, overlap 1151173 GAGTTTGATATACTA TATACCCTTGTT TCA AACAAGGGTAAA GTTTTATCAAGAGAA TERM 1713 1151198 - 1151176 - g 100 -13.6 -2.88999 | opp_overlap 1151174 1151173, overlap 1151178 GTTTGATATACTATA TACCCTTGTT TCA AACAAGGGTA AAGTTTTATCAAGAG TERM 1714 1151196 - 1151178 - g 90 -11.8 -2.99545 | opp_overlap 1151174 1151173, overlap 1151176 TTGATATACTATATA CCCTTGTT TCA AACAAGGG TAAAGTTTTATCAAG CLD_3523 1150691 - 1151377 + | DNA-binding response regulator CLD_3522 1151378 - 1152733 + | sensor histidine kinase CLD_3521 1152836 - 1152970 + | hypothetical protein TERM 1715 1153073 - 1153061 - f 70 -6.3 -4.2717 | opp_overlap 1153061 1153059 ATTATTTTAGCAAAA TTCAC ACT GTGAA TAATTTTTTAGCATG TERM 1716 1154133 - 1154171 + G 80 -6.7 -4.68724 | opp_overlap 1154133 AGTTCGACGATACTA TCCTTTCGCTCCTTTTC TTGGT GCAAGAGTGCGAAAGGA TTTTATATTGAATGA CLD_3520 1153267 - 1154526 + | cytochrome P450 CLD_3519 1156474 - 1154666 - | heavy metal-binding domain-containing protein TERM 1717 1156270 - 1156283 + g 84 -6.7 -5.24531 | CATTAGAACTTTGTG TGCTG TATC CAGCA TTTTTTATAGCGGAT TERM 1718 1156591 - 1156603 + H 72 -4.9 -5.07486 | TAATAAATTTGTATC TTTAG AAA CTAAA TTTTTATTACAAATA CLD_3518 1156900 - 1157208 + | hypothetical protein CLD_3517 1157620 - 1157856 + | hypothetical protein TERM 1719 1157875 - 1157898 + F 95 -10.4 -4.371 | opp_overlap 1157862 1157875 AATTATATACTTAAA TAGCTAGAGG TTAA TCTCTAGCTA TTTTGATATAATAAA TERM 1720 1157898 - 1157875 - f 84 -9.7 -3.75193 | opp_overlap 1157875, overlap 1157862 AATTATATACTTAAA TAGCTAGAG GTTAAT CTCTAGCTA TTTTGATATAATAAA TERM 1721 1157990 - 1158010 + F 70 -7.7 -3.32343 | opp_overlap 1158002 TAAATTGTGTGATAG TTCTTGTAC ATA GTATAAGAA TTCTGAAGCTCTGAA CLD_3516 1158126 - 1158827 + | DNA-binding response regulator TERM 1722 1159654 - 1159644 - g 70 -5.4 -4.63527 | TTACGACTTTAAAAA CTCA TGT TGAG GCAATAATAGATGGT CLD_3515 1158827 - 1160248 + | sensor histidine kinase TERM 1723 1160553 - 1160505 - T 75 -9.1 -3.22818 | opp_overlap 1160506, overlap 1160503 1160501 1160500 ATAAATAAAAGCATA TTTAAGAGGGAGTTTCAAAATTA GAT TTATTTTGAGACTTCCTCTTAAT TTTATGGTCTAGTTT TERM 1724 1160506 - 1160552 + T 100 -17 -4.5265 | opp_overlap 1160505 1160503 1160501 1160500 TAAATAAAAGCATAT TTAAGAGGGAGTTTCAAAATTA GAT TTATTTTGAGACTTCCTCTTAA TTTTATGGTCTAGTT CLD_3514 1161274 - 1160588 - | hypothetical protein CLD_3513 1162148 - 1161510 - | AraC family transcriptional regulator TERM 1725 1161690 - 1161709 + g 79 -5 -5.23943 | opp_overlap 1161690 1161689 AATTTCATTTACAAG CTGAGAAA AAGT TTTCCCAG TTTCTTTTTTTAATA CLD_3512 1162514 - 1163467 + | iron chelate ABC transporter permease protein CLD_3511 1163457 - 1164407 + | iron chelate ABC transporter permease protein CLD_3510 1164404 - 1165159 + | iron chelate ABC transporter ATP-binding protein CLD_3509 1165233 - 1166177 + | iron chelate ABC transporter solute-binding protein CLD_3508 1166379 - 1167380 + | AraC family transcriptional regulator TERM 1726 1167393 - 1167421 + F 86 -5.5 -5.71712 | gap 1, opp_overlap 1167404 TAAATTATTAAATTT TACTGC-ATACA TGCTAT TGTATTGCAGTA TTTTTTTGTGTGAAA TERM 1727 1167529 - 1167485 - f 75 -8.1 -3.59109 | opp_overlap 1167486 1167488 1167490, overlap 1167490 GTAGAGATGAGATAA GTGAAGCCCTATAATTGAT AATGGGA ATCAATTATAGGGCTCTAT TTTTTTATAAATTAT TERM 1728 1167486 - 1167528 + F 100 -11.6 -5.66684 | opp_overlap 1167485 1167490, overlap 1167488 1167490 TAGAGATGAGATAAG TGAAGCCCTATAATTGAT AATGGGA ATCAATTATAGGGCTCTA TTTTTTTATAAATTA TERM 1729 1167488 - 1167526 + F 100 -12 -4.46105 | opp_overlap 1167485 1167490, overlap 1167486 1167490 GAGATGAGATAAGTG AAGCCCTATAATTGAT AATGGGA ATCAATTATAGGGCTC TATTTTTTTATAAAT TERM 1730 1167524 - 1167490 - f 100 -14.6 -3.27164 | opp_overlap 1167488 1167486 1167490, overlap 1167485 GATGAGATAAGTGAA GCCCTATAATTGAT AATGGGA ATCAATTATAGGGC TCTATTTTTTTATAA TERM 1731 1167490 - 1167524 + F 100 -14.6 -3.81806 | opp_overlap 1167490 1167485, overlap 1167488 1167486 GATGAGATAAGTGAA GCCCTATAATTGAT AATGGGA ATCAATTATAGGGC TCTATTTTTTTATAA CLD_3507 1167893 - 1169695 + | ABC transporter ATP-binding/permease protein TERM 1732 1170201 - 1170219 + G 80 -8.9 -3.8512 | CTTTCTATGTTTGCT GCAATGC CAGTA GCATTGC TTATTATCATAGGTA CLD_3506 1169697 - 1171412 + | ABC transport ATP-binding/permease protein TERM 1733 1171473 - 1171524 + T 83 -6.2 -5.38951 | opp_overlap 1171473 AATAGTGCTATAAAA TAAAAGTCCATTGAAAGACAAACA TTAA TTTTAGTTTTTTAATGAACTTTTA TTTTTTATGTAGATT CLD_3505 1172992 - 1171619 - | sensor histidine kinase TERM 1734 1171740 - 1171761 + g 70 -3.8 -5.08255 | overlap 1171751 1171753 ATACCATGGTTATTT TTATCAGT TTTTGT GCTGATAA TTTTATTTTCGGCAT CLD_3504 1173702 - 1172995 - | DNA-binding response regulator CLD_3503 1174659 - 1173790 - | hypothetical protein TERM 1735 1177637 - 1177616 - g 70 -8.9 -2.52464 | opp_overlap 1177609 TGTTGTTTTAACGGA TGTTATTTC ACCT GAAATAACA GGAGCAGAATTCTCA TERM 1736 1177847 - 1177829 - g 85 -10.4 -3.69283 | opp_overlap 1177826 TAATCCAGGCAATAA CACATCTA CAG TAGATGTG GAAGTTATCCCGGTT TERM 1737 1178228 - 1178210 - g 95 -10.4 -4.1235 | opp_overlap 1178207 1178227 TAATCCAAACAATAA CACATCTA CAG TAGATGTG GAAGTTATTCCGGTT CLD_3502 1175271 - 1178702 + | hypothetical protein TERM 1738 1178724 - 1178766 + F 86 -11.5 -2.74598 | gap 1, opp_overlap 1178724, overlap 1178721 TTAATATAAAATAAA GGGACTGCCTCACAATGTAT AAAA ATACAATGTGA-GAAGTCCC TCATCTGCTTTATAG TERM 1739 1178766 - 1178724 - f 100 -13.7 -4.88163 | gap 1, opp_overlap 1178724 1178721 TTAATATAAAATAAA GGGACTGCCTCACAATGTAT AAAA ATACAATGTGAGA-AGTCCC TCATCTGCTTTATAG CLD_3501 1178890 - 1180389 + | extracellular exochitinase TERM 1740 1180467 - 1180453 - f 75 -8.6 -3.62572 | opp_overlap 1180455 1180456 1180459, overlap 1180451 1180458 1180459 ATTTAACTATAAATA GAGAAG GGC CTTCTC ATAATGAATTTTATG TERM 1741 1180459 - 1180497 + F 76 -8.2 -3.75911 | opp_overlap 1180453 1180451 1180458 1180459, overlap 1180456 1180455 CTATAAATAGAGAAG GGCCTTCTCATAATGAAT TTT ATGCATTATGGGACGCCC TCTTATTTGTTTAAA TERM 1742 1180609 - 1180625 + F 78 -4.4 -5.61689 | ATAATAAGAGGATAG GGGTAG CTCAT CTACTC TTTTTTGTTGCTTTT CLD_3500 1180715 - 1182757 + | hypothetical protein TERM 1743 1182917 - 1182956 + F 85 -10.9 -2.76492 | opp_overlap 1182913 1182918 1182920 1182923, overlap 1182916 AATATAAAATATTTA ATATAAGCCTTCGCTAT AATTTA ATAGCGAAGGCTTAAAA ATTTAAGATAACTAA TERM 1744 1182955 - 1182918 - f 100 -14.4 -3.31575 | opp_overlap 1182917 1182916, overlap 1182913 1182920 1182923 ATATAAAATATTTAA TATAAGCCTTCGCTAT AATTTA ATAGCGAAGGCTTAAA AATTTAAGATAACTA TERM 1745 1182953 - 1182920 - f 100 -17 -3.2099 | opp_overlap 1182917 1182916, overlap 1182918 1182913 1182923 ATAAAATATTTAATA TAAGCCTTCGCTAT AATTTA ATAGCGAAGGCTTA AAAATTTAAGATAAC TERM 1746 1182950 - 1182923 - f 100 -14.3 -3.7212 | opp_overlap 1182917 1182916, overlap 1182920 1182918 1182913 AAATATTTAATATAA GCCTTCGCTAT AATTTA ATAGCGAAGGC TTAAAAATTTAAGAT TERM 1747 1182969 - 1182982 + F 70 -2.5 -5.48054 | opp_overlap 1182969, overlap 1182969 AAAATTTAAGATAAC TAATA AAAT TATTA TTTTTTAATTTTAAT TERM 1748 1183134 - 1183111 - g 80 -6.1 -4.9181 | overlap 1183113 ATAGAACATTAAAAA CAGCAATTG GAGCTA CAATTGCTA TGAGTATTGCAGGCG TERM 1749 1183132 - 1183113 - g 70 -6.5 -4.06487 | overlap 1183111 AGAACATTAAAAACA GCAATTG GAGCTA CAATTGC TATGAGTATTGCAGG CLD_3499 1183080 - 1184075 + | hypothetical protein TERM 1750 1184185 - 1184150 - f 70 -7.7 -3.39439 | opp_overlap 1184151, overlap 1184143 1184148 1184146 1184151 1184153 ATAAATAATAACACA GTAGTGCTAAAGGTC AAATAG GAACTTTAGCACTAT TTTATATTATACTCA TERM 1751 1184184 - 1184151 - f 83 -11.2 -2.62037 | opp_overlap 1184151, overlap 1184143 1184150 1184148 1184146 1184153 TAAATAATAACACAG TAGTGCTAAAGGTC AAATAG GAACTTTAGCACTA TTTTATATTATACTC TERM 1752 1184151 - 1184184 + F 100 -11.2 -4.75289 | opp_overlap 1184143 1184151 1184150 1184148 1184146 1184153 TAAATAATAACACAG TAGTGCTAAAGGTC AAATAG GAACTTTAGCACTA TTTTATATTATACTC TERM 1753 1184182 - 1184153 - f 76 -9.4 -2.82897 | opp_overlap 1184151, overlap 1184143 1184151 1184150 1184148 1184146 AATAATAACACAGTA GTGCTAAAGGTC AAATAG GAACTTTAGCAC TATTTTATATTATAC CLD_3498 1184240 - 1184824 + | hypothetical protein CLD_3497 1185838 - 1185137 - | CAAX amino terminal protease family protein TERM 1754 1185629 - 1185608 - G 89 -6.7 -5.42131 | opp_overlap 1185608 1185611, overlap 1185601 CAATGACATAAAAAA GCTTTGTTT TTTA AAACAAAAC AATTTTTTTAAGGAT TERM 1755 1185611 - 1185631 + g 78 -4.1 -5.42259 | opp_overlap 1185601 1185608, overlap 1185608 TGACATAAAAAAGCT TTGTTTTTT AAA ACAAAACAA TTTTTTTAAGGATAA CLD_3496 1186760 - 1185954 - | metallo-beta-lactamase family protein CLD_3495 1189063 - 1187144 - | drug resistance ABC transporter, ATP-binding protein TERM 1756 1187364 - 1187380 + g 71 -4.5 -4.71222 | TTTTCGTATTCAAGT TTTTCTT TAT AAGAGAA TTTTAATTTTGATGT TERM 1757 1187528 - 1187544 + g 70 -5.1 -4.65747 | overlap 1187529 AGAAATTTTTCCGTT ACCTTCA AAG TGAAGGA TTTTATTACAGATTC TERM 1758 1187529 - 1187543 + g 76 -8.6 -3.38725 | overlap 1187528 GAAATTTTTCCGTTA CCTTCA AAG TGAAGG ATTTTATTACAGATT TERM 1759 1187999 - 1187986 - G 74 -6.7 -4.32048 | opp_overlap 1187985 TAATAATATTTAAAA GGGTA GACT TACCC ATTCCATTGTTTCCC TERM 1760 1188058 - 1188069 + g 74 -3 -5.4756 | AAATGTAATTAAAGT CTTT TATT AAAG TTTTTTCTTCAAATT CLD_3494 1189701 - 1190915 + | hypothetical protein TERM 1761 1190939 - 1190972 + F 100 -13.5 -5.06414 | opp_overlap 1190939 TAGAAAATGTAAAAA TAGAGATATGGAATT TTAA AATTCTATATCTCTA TTTTTATTGAAAAGC TERM 1762 1190972 - 1190939 - f 100 -11.3 -4.89729 | opp_overlap 1190939 TAGAAAATGTAAAAA TAGAGATATGGAATT TTAA AATTCTATATCTCTA TTTTTATTGAAAAGC TERM 1763 1191335 - 1191319 - g 74 -2.3 -5.52384 | overlap 1191321 TTTGGAGTAAAAAAA TGTTTTG ATA CAAAAAA AGCTGAGAGATATTT CLD_3493 1191289 - 1191639 + | ArsC family protein CLD_3492 1191858 - 1192751 + | radical SAM domain-containing protein TERM 1764 1192934 - 1192878 - f 82 -9.8 -3.0094 | gap 1, opp_overlap 1192882 TTTTAGGCAGAGATA TTGAGAGCCTTAATTTAAAACGGG-AT TATT ATACCCATTTTAAATTAAGGCTCTTTT GATTTATAAGGAGGA TERM 1765 1192882 - 1192930 + F 100 -17.2 -4.61873 | gap 1, opp_overlap 1192878 AGGCAGAGATATTGA GAGCCTTAATTTAAAACGGG-AT TATT ATACCCATTTTAAATTAAGGCTC TTTTGATTTATAAGG CLD_3491 1192959 - 1194377 + | FAD-dependent oxidoreductase CLD_3490 1194434 - 1195690 + | pyridine nucleotide-disulphide oxidoreductase CLD_3489 1195693 - 1196061 + | hypothetical protein TERM 1766 1196112 - 1196058 - f 100 -18.4 -4.58395 | opp_overlap 1196063 1196072, overlap 1196065 TCTAGGTTGTAAAAA TTAAATATCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGACGGTTAA TAAATATTGACAATA TERM 1767 1196063 - 1196107 + F 100 -18.3 -2.52987 | opp_overlap 1196058 1196065, overlap 1196072 GTTGTAAAAATTAAA TATCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGACG GTTAATAAATATTGA TERM 1768 1196105 - 1196065 - f 100 -23.1 -3.7557 | opp_overlap 1196063 1196072, overlap 1196058 TGTAAAAATTAAATA TCAATAAGGATAGCTAATA TAA TATTAGCTATCCTTATTGA CGGTTAATAAATATT TERM 1769 1196072 - 1196098 + F 100 -15.4 -3.65581 | opp_overlap 1196065 1196058, overlap 1196063 ATTAAATATCAATAA GGATAGCTAATA TAA TATTAGCTATCC TTATTGACGGTTAAT TERM 1770 1196897 - 1196871 - g 80 -6.9 -4.73614 | opp_overlap 1196870 1196889 TATCAGGAAAAGAAA TATTATTTAAA TATGT TTTAAATAATA AATATTTATGGTATA TERM 1771 1197288 - 1197272 - g 70 -3.5 -5.02074 | TTAGTTCCTAAAAAA GCAGCAG GTA CGGCAGC AGGCTTTACAGGTTT glpT 1196150 - 1197487 + | glycerol-3-phosphate transporter TERM 1772 1197897 - 1197872 - f 95 -11.9 -3.30124 | opp_overlap 1197865 1197864 1197873, overlap 1197873 TGGTACCGCGGATAA TCCGTCTCTGT TTTT ACAGAGACGGT TTTTTTATATATAAT TERM 1773 1197873 - 1197896 + F 100 -15.4 -5.76633 | opp_overlap 1197873 1197872, overlap 1197865 1197864 GGTACCGCGGATAAT CCGTCTCTGT TTTT ACAGAGACGG TTTTTTTATATATAA TERM 1774 1197896 - 1197873 - f 100 -15.4 -2.57931 | opp_overlap 1197865 1197864 1197873, overlap 1197872 GGTACCGCGGATAAT CCGTCTCTGT TTTT ACAGAGACGG TTTTTTTATATATAA argS 1198069 - 1199760 + | arginyl-tRNA synthetase TERM 1775 1199875 - 1199893 + F 70 -2.5 -5.5762 | CTACTAAAGCTTATT TATATGT TTATT ACGTATA TTTTTTATCTTTGCT TERM 1776 1199977 - 1200006 + F 91 -10.3 -3.66424 | opp_overlap 1199977 1199976 TTGGATATACAAAAT TGCTTTATTTATT AAAT AATAAATAAGGCA TTTCAAGTAATTTTA TERM 1777 1200006 - 1199977 - f 74 -8.1 -3.35996 | opp_overlap 1199977, overlap 1199976 TTGGATATACAAAAT TGCTTTATTTATT AAAT AATAAATAAGGCA TTTCAAGTAATTTTA CLD_3486 1200163 - 1200276 + | hypothetical protein TERM 1778 1201188 - 1201178 - g 74 -6.8 -4.24948 | opp_overlap 1201183 GTATCATATGTAAAA CCAG TTG CTGG GAATACGGCATTAAT CLD_3485 1200266 - 1201396 + | dipeptidase CLD_3484 1201535 - 1201915 + | CBS domain-containing protein TERM 1779 1201998 - 1201956 - T 100 -9.5 -5.67063 | opp_overlap 1201956 GCTAGGATAAAAAAA CACTTAATGAACTAATT CATTTTGCT AATAAGTTCATTAAGTG TTTTTTTATCTTTGC TERM 1780 1201956 - 1201998 + T 100 -9.5 -5.88197 | opp_overlap 1201956 GCTAGGATAAAAAAA CACTTAATGAACTAATT CATTTTGCT AATAAGTTCATTAAGTG TTTTTTTATCTTTGC CLD_3483 1202283 - 1202125 - | hypothetical protein feoB 1204072 - 1202309 - | ferrous iron transport protein B TERM 1781 1202521 - 1202497 - G 73 -8.8 -3.18506 | overlap 1202496 ATAATGGAGTAAAAT GATTTAAAAG AGTAA CTTTTAAATC TCCACCATATATAAC feoA 1204308 - 1204087 - | ferrous ion transport protein A TERM 1782 1204163 - 1204181 + g 93 -5.9 -5.76949 | overlap 1204180 AAATTTATTAGTATG GGGTCTC CTAAA GGGGCCC TTTTTTTTAAGGATA CLD_3480 1204634 - 1205029 + | hypothetical protein TERM 1783 1205056 - 1205066 + F 71 -5.4 -4.68908 | GGGTGGAGTTTCATT GGAA GAA TTCC TTTGTTTTAACTAGG TERM 1784 1205121 - 1205153 + F 95 -13 -3.49102 | opp_overlap 1205121 1205126, overlap 1205126 ATAAGTTAATTAAAA TAAAAGAAAAAGGG TTAAC CCCTTTTTCTTTTG TTATATAAAGCATAT TERM 1785 1205153 - 1205121 - f 100 -10.8 -4.46267 | opp_overlap 1205121 1205126, overlap 1205126 ATAAGTTAATTAAAA TAAAAGAAAAAGGG TTAAC CCCTTTTTCTTTTG TTATATAAAGCATAT TERM 1786 1205148 - 1205126 - f 100 -10.7 -5.18643 | opp_overlap 1205121 1205126, overlap 1205121 TTAATTAAAATAAAA GAAAAAGGG TTAAC CCCTTTTTC TTTTGTTATATAAAG TERM 1787 1205126 - 1205148 + F 100 -10.7 -4.84311 | opp_overlap 1205126 1205121, overlap 1205121 TTAATTAAAATAAAA GAAAAAGGG TTAAC CCCTTTTTC TTTTGTTATATAAAG CLD_3479 1205243 - 1205968 + | haloacid dehalogenase, IB family protein TERM 1788 1206039 - 1206074 + F 73 -3.4 -5.51165 | opp_overlap 1206043, overlap 1206040 1206043 AAATATATATGTTAA AAAATGCACAATTTTA ATTT TAAAATTGTGCATAAA TTTTTTTGCCGTTTT TERM 1789 1206043 - 1206070 + F 93 -13 -2.99257 | opp_overlap 1206043, overlap 1206040 1206039 ATATATGTTAAAAAA TGCACAATTTTA ATTT TAAAATTGTGCA TAAATTTTTTTGCCG TERM 1790 1206070 - 1206043 - f 100 -13 -5.08169 | opp_overlap 1206040 1206039 1206043 ATATATGTTAAAAAA TGCACAATTTTA ATTT TAAAATTGTGCA TAAATTTTTTTGCCG TERM 1791 1207289 - 1207269 - g 72 -6.9 -4.18763 | opp_overlap 1207268, overlap 1207272 AAGAAATTTGGAAAA TGATAGGAG TAA CTCCTATGA ATGGTTTAGATTATA TERM 1792 1207286 - 1207272 - g 73 -8.6 -3.1012 | opp_overlap 1207268, overlap 1207269 AAATTTGGAAAATGA TAGGAG TAA CTCCTA TGAATGGTTTAGATT CLD_3478 1206404 - 1208026 + | putative glycosyl hydrolase TERM 1793 1208067 - 1208104 + F 100 -11.5 -4.7261 | opp_overlap 1208067 ATAAATTTTTTAAGA GTATTGGGTTAGAGGTA TATT TCTCTCTAATCCAATAC TTTATTTTAATCAAT TERM 1794 1208283 - 1208268 - f 70 -6.2 -4.19621 | opp_overlap 1208267 1208270 TATAATATAAAAAGA GATAAG ATTA CTTATC AATTTTGGAGGGAAT CLD_3477 1208437 - 1208904 + | acetyltransferase TERM 1795 1209091 - 1209116 + F 100 -9.1 -6.17669 | opp_overlap 1209094, overlap 1209094 AAAATTTCGCTTATT AAAGCTAGAGA TTTT TCTCTAGCTTA TTTTTTTATTTTATT TERM 1796 1209094 - 1209113 + F 100 -10.8 -5.04908 | opp_overlap 1209094, overlap 1209091 ATTTCGCTTATTAAA GCTAGAGA TTTT TCTCTAGC TTATTTTTTTATTTT TERM 1797 1209113 - 1209094 - f 91 -10.8 -3.72695 | opp_overlap 1209094 1209091 ATTTCGCTTATTAAA GCTAGAGA TTTT TCTCTAGC TTATTTTTTTATTTT TERM 1798 1209470 - 1209456 - g 75 -5.8 -4.77157 | TTAACTTATTAAAAA GAAAAA ATG TTTTTC AAAATATTGCATTAC CLD_3476 1209182 - 1210138 + | methionine ABC transporter ATP-binding protein CLD_3475 1210140 - 1210781 + | methionine ABC transporter permease CLD_3474 1210836 - 1211648 + | NLPA family lipoprotein TERM 1799 1212588 - 1212570 - g 93 -4.7 -6.08342 | GAAGAAATAAAAAAA TATATTG AAGAA CAATATA AAGGAGCTATACTTC CLD_3473 1211802 - 1212614 + | NLPA family lipoprotein CLD_3472 1212842 - 1214008 + | amidohydrolase family protein TERM 1800 1214123 - 1214157 + F 72 -9 -2.68806 | opp_overlap 1214128 1214129, overlap 1214129 1214136 CACATGAATAATCAT TAAGAGTTTTTAATTT TGA AAATTAAAAATTTTTA TAACTTCTTGTAGGA TERM 1801 1214129 - 1214151 + F 90 -8 -4.94222 | opp_overlap 1214129 1214128, overlap 1214123 1214136 AATAATCATTAAGAG TTTTTAATTT TGA AAATTAAAAA TTTTTATAACTTCTT CLD_3471 1214273 - 1214389 + | hypothetical protein TERM 1802 1214525 - 1214569 + F 72 -8.1 -3.16475 | gap 2, opp_overlap 1214564 TTATCCGATGACTAC CCGCTCTAATACTCTCATCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTACGTCTCTGGATA CLD_3470 1214710 - 1215339 + | hypothetical protein TERM 1803 1215373 - 1215328 - f 100 -17.5 -4.18702 | gap 1, opp_overlap 1215328 1215336 ACAACCTGGAACAAA TTTATAAACTAAGGAAAGTGTA GAT TA-ACTTTCCTTAGTTTATAAA TTTAGAATTTGATAT TERM 1804 1215328 - 1215373 + F 100 -17.5 -3.73509 | gap 1, opp_overlap 1215328, overlap 1215336 ACAACCTGGAACAAA TTTATAAACTAAGGAAAGTGTA GAT TA-ACTTTCCTTAGTTTATAAA TTTAGAATTTGATAT TERM 1805 1215336 - 1215365 + F 95 -10.3 -4.02132 | gap 1, opp_overlap 1215328, overlap 1215328 GAACAAATTTATAAA CTAAGGAAAGTGTA GAT TA-ACTTTCCTTAG TTTATAAATTTAGAA TERM 1806 1216415 - 1216405 - g 70 -4 -4.86773 | TAAAATTATGAAAAA TGTT GAA AACA AAAAAGAGCTAGTAG CLD_3469 1215845 - 1216537 + | GntR family transcriptional regulator CLD_3468 1216782 - 1217645 + | hypothetical protein CLD_3467 1217854 - 1218066 + | hypothetical protein TERM 1807 1218149 - 1218133 - T 73 -5.3 -4.75063 | opp_overlap 1218133 1218136 ACAAAATTTCAAAAA TAATATT CTT AATATTA TATAGTATTTCAAAT TERM 1808 1218255 - 1218224 - T 100 -11.8 -6.32976 | opp_overlap 1218229 1218245 AAAAAAATAAAAAAA TAAAATCTCAGCTA TAAT TAGCTGAGATTTTT CTTAGTGTATATTTA TERM 1809 1218229 - 1218250 + T 100 -11.7 -5.17744 | opp_overlap 1218224, overlap 1218245 AATAAAAAAATAAAA TCTCAGCTA TAAT TAGCTGAGA TTTTTCTTAGTGTAT gltX 1219756 - 1218299 - | glutamyl-tRNA synthetase TERM 1810 1219268 - 1219280 + g 89 -4.1 -5.84432 | ATGGAAAGAAGTTGA TCCAG TAG TTGGA TTTTTTTGTCTTATA TERM 1811 1219817 - 1219795 - H 91 -8.5 -5.0065 | TATTTATAAATAAAA CCTTTCATC ACTTG GACGAAAGG TAAAAATTCATTTTA TERM 1812 1220548 - 1220538 - g 72 -4 -5.08824 | GCTGGAGCTAAAAAA GTTA TAA TAAC AGCACCAGGAAAAAA TERM 1813 1221064 - 1221090 + G 75 -7.4 -4.07885 | opp_overlap 1221060, overlap 1221060 GAGATTCAAGATCCT CTATAGTGGATG GAT TATCTACTATGG TTTTAGAAGACGATA gap 1220181 - 1221197 + | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 1814 1221371 - 1221328 - T 100 -9.8 -4.53703 | opp_overlap 1221328 AAAATAAGATTAAAA GAGACTATCTCAGAACAAAT TTAA ATCTATTTTGAGACAGCCTC TTTCTTTTTAATATA CLD_3464 1222935 - 1221427 - | metallo-beta-lactamase family protein TERM 1815 1223213 - 1223257 + H 72 -8.1 -3.16475 | gap 2, opp_overlap 1223252 TTGTCCGATGGCTAC CCGCTCTAATACTCCTATCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTACGTCTCTGGATA TERM 1816 1223325 - 1223274 - H 93 -12.4 -3.28924 | opp_overlap 1223274 1223275 1223278, overlap 1223275 1223277 TACGTCTCTGGATAA CGATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCT GTTTATAAAATATTG TERM 1817 1223274 - 1223326 + H 93 -10 -3.93004 | gap 1, opp_overlap 1223274 1223275 1223277, overlap 1223275 1223278 TACGTCTCTGGATAA C-GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTCTG TTTATAAAATATTGT TERM 1818 1223324 - 1223275 - H 100 -15.9 -2.57211 | opp_overlap 1223275 1223274 1223278, overlap 1223274 1223277 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATAAAATATT TERM 1819 1223275 - 1223324 + H 100 -13.7 -3.54848 | opp_overlap 1223274 1223275 1223277, overlap 1223274 1223278 ACGTCTCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAACTC TGTTTATAAAATATT TERM 1820 1223322 - 1223277 - H 91 -12.7 -2.82623 | opp_overlap 1223275 1223274 1223278, overlap 1223275 1223274 GTCTCTGGATAACGA TTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAAC TCTGTTTATAAAATA TERM 1821 1223278 - 1223321 + H 100 -14 -2.60065 | opp_overlap 1223277 1223275 1223274, overlap 1223275 1223274 TCTCTGGATAACGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGCCAAGAA CTCTGTTTATAAAAT CLD_3463 1223431 - 1223580 + | hypothetical protein CLD_3462 1223723 - 1224367 + | HD domain-containing protein CLD_3461 1224423 - 1225793 + | aldehyde dehydrogenase family protein TERM 1822 1225864 - 1225819 - T 84 -4.9 -5.7827 | opp_overlap 1225823 1225828 1225834, overlap 1225822 1225824 1225828 1225834 AATATAAATAAAAAA GAATATAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTAGTGTA TATTACAAATTAGCA TERM 1823 1225861 - 1225822 - T 100 -11 -4.9072 | opp_overlap 1225823 1225828 1225834, overlap 1225819 1225824 1225828 1225834 ATAAATAAAAAAGAA TATAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTAGT GTATATTACAAATTA TERM 1824 1225823 - 1225860 + T 100 -14.5 -3.10017 | opp_overlap 1225822 1225819 1225824 1225828 1225834, overlap 1225828 1225834 TAAATAAAAAAGAAT ATAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTAG TGTATATTACAAATT TERM 1825 1225859 - 1225824 - T 100 -18 -4.02034 | opp_overlap 1225823 1225828 1225834, overlap 1225822 1225819 1225828 1225834 AAATAAAAAAGAATA TAAATAAAAAGTCAGG ATTT CCTGACTTTTTATTTA GTGTATATTACAAAT TERM 1826 1225855 - 1225828 - T 100 -14.4 -4.50902 | opp_overlap 1225823 1225828 1225834, overlap 1225824 1225822 1225819 1225834 AAAAAAGAATATAAA TAAAAAGTCAGG ATTT CCTGACTTTTTA TTTAGTGTATATTAC TERM 1827 1225828 - 1225855 + T 100 -14.4 -3.93383 | opp_overlap 1225828 1225824 1225822 1225819 1225834, overlap 1225823 1225834 AAAAAAGAATATAAA TAAAAAGTCAGG ATTT CCTGACTTTTTA TTTAGTGTATATTAC TERM 1828 1225834 - 1225849 + T 100 -9 -5.35815 | opp_overlap 1225828 1225824 1225822 1225819 1225834, overlap 1225828 1225823 GAATATAAATAAAAA GTCAGG ATTT CCTGAC TTTTTATTTAGTGTA TERM 1829 1225849 - 1225834 - T 100 -9 -5.4659 | opp_overlap 1225834 1225828 1225823, overlap 1225828 1225824 1225822 1225819 GAATATAAATAAAAA GTCAGG ATTT CCTGAC TTTTTATTTAGTGTA CLD_3460 1227271 - 1225874 - | sodium:alanine symporter family protein TERM 1830 1226175 - 1226161 - G 81 -5.8 -5.21709 | opp_overlap 1226161 TTTCACAGTAAAAAA CTATAA CTA TTATAG TTGATAAAACAAATA TERM 1831 1226283 - 1226269 - G 70 -8.6 -2.71119 | overlap 1226268 ATGCAGGCATAGAAG CTGCTT GAG AAGCAG GGAGTTTTTCCCATA TERM 1832 1227760 - 1227794 + r 76 -8.1 -3.71284 | gap 1, opp_overlap 1227761 1227771, overlap 1227761 1227764 1227771 TGAATTGGAAAACAT ACATAAAAAAACTCCC CAGA GGGAG-TTTTTTATGA TTGTATTGATGGCCC TERM 1833 1227761 - 1227793 + r 88 -11.6 -2.82449 | gap 1, opp_overlap 1227761 1227771, overlap 1227760 1227764 1227771 GAATTGGAAAACATA CATAAAAAAACTCCC CAGA GGGAG-TTTTTTATG ATTGTATTGATGGCC TERM 1834 1227793 - 1227761 - R 95 -11.6 -3.42437 | gap 1, opp_overlap 1227760 1227761 1227764 1227771, overlap 1227771 GAATTGGAAAACATA CATAAAAAAACTCCC CAGA GGGAG-TTTTTTATG ATTGTATTGATGGCC TERM 1835 1227764 - 1227791 + r 82 -10 -2.95751 | opp_overlap 1227761 1227771, overlap 1227761 1227760 1227771 TTGGAAAACATACAT AAAAAAACTCCC CAGA GGGAGTTTTTTA TGATTGTATTGATGG TERM 1836 1227784 - 1227771 - R 100 -8.1 -5.77988 | opp_overlap 1227771 1227764 1227761 1227760, overlap 1227761 ACATACATAAAAAAA CTCCC CAGA GGGAG TTTTTTATGATTGTA TERM 1837 1227771 - 1227784 + r 100 -8.1 -5.39755 | opp_overlap 1227761 1227771, overlap 1227764 1227761 1227760 ACATACATAAAAAAA CTCCC CAGA GGGAG TTTTTTATGATTGTA TERM 1838 1227804 - 1227836 + r 83 -9.3 -3.65314 | gap 1, overlap 1227805 TTATGATTGTATTGA T-GGCCCCCTTATG TAAATT CATAAGGGGGTCTA TTATTAAAGATTAGA TERM 1839 1227805 - 1227834 + r 100 -14.4 -3.40498 | overlap 1227804 TATGATTGTATTGAT GGCCCCCTTATG TAAATT CATAAGGGGGTC TATTATTAAAGATTA CLD_3459 1229244 - 1227868 - | sodium:alanine symporter family protein TERM 1840 1228221 - 1228196 - G 70 -5.6 -4.32436 | gap 1 ATAGCACCACCAAAA GCTTTACCAAA TACAT TTTGG-AAAGC CATTGAAGGCATAGA TERM 1841 1229602 - 1229657 + H 100 -14.6 -2.67803 | gap 1, opp_overlap 1229605, overlap 1229605 AGGAAAATATTTGAA TAATAGTTGCAAGTACAAC-TAATTTG TGA TATATTAAGTTGTATTTGCAACTATTA TAAATTTAATGGAGG TERM 1842 1229605 - 1229654 + H 95 -11.9 -3.48807 | gap 1, opp_overlap 1229605, overlap 1229602 AAAATATTTGAATAA TAGTTGCAAGTACAAC-TAATTTG TGA TATATTAAGTTGTATTTGCAACTA TTATAAATTTAATGG TERM 1843 1229654 - 1229605 - H 79 -9 -3.69976 | gap 1, opp_overlap 1229602 1229605 AAAATATTTGAATAA TAGTTGCAAGTACAAC-TAATTT GTGAT ATATTAAGTTGTATTTGCAACTA TTATAAATTTAATGG CLD_3458 1229682 - 1230119 + | MarR family transcriptional regulator CLD_3457 1230137 - 1231504 + | MATE efflux family protein TERM 1844 1231563 - 1231596 + F 88 -8.4 -4.88388 | opp_overlap 1231563 GAACTTATAATTAAA GCTTAGAGATAATT TTGATT AGTTATTTCTAAGC TTTTTATAAGGTTCT CLD_3456 1231924 - 1232469 + | TPR domain-containing protein TERM 1845 1232489 - 1232451 - f 78 -8.6 -3.95893 | opp_overlap 1232451 1232458, overlap 1232446 1232458 AAAAGACATATTAAA TAAAAAATATTTTAATTA ATG TAAATAAAATATTTTCTA AAGGATAAGAATAAT TERM 1846 1232482 - 1232458 - f 82 -4.5 -5.69793 | opp_overlap 1232451 1232458, overlap 1232446 1232451 ATATTAAATAAAAAA TATTTTAATTA ATG TAAATAAAATA TTTTCTAAAGGATAA TERM 1847 1232538 - 1232507 - f 95 -10.4 -4.13244 | opp_overlap 1232508 1232513, overlap 1232508 1232513 GGATAAGAATAATAA GTAAAAGCTATGAT AGAA ATCATAGCTTTTAT AAATTTACGTTAAAT TERM 1848 1232537 - 1232508 - f 100 -13.9 -3.06862 | opp_overlap 1232508 1232513, overlap 1232507 1232513 GATAAGAATAATAAG TAAAAGCTATGAT AGAA ATCATAGCTTTTA TAAATTTACGTTAAA TERM 1849 1232508 - 1232537 + F 100 -13.9 -2.68071 | opp_overlap 1232507 1232508 1232513, overlap 1232513 GATAAGAATAATAAG TAAAAGCTATGAT AGAA ATCATAGCTTTTA TAAATTTACGTTAAA TERM 1850 1232532 - 1232513 - f 93 -9.4 -4.61824 | opp_overlap 1232508 1232513, overlap 1232508 1232507 GAATAATAAGTAAAA GCTATGAT AGAA ATCATAGC TTTTATAAATTTACG TERM 1851 1232513 - 1232532 + F 93 -9.4 -4.51196 | opp_overlap 1232513 1232508 1232507, overlap 1232508 GAATAATAAGTAAAA GCTATGAT AGAA ATCATAGC TTTTATAAATTTACG TERM 1852 1233169 - 1233147 - g 72 -8 -3.58511 | opp_overlap 1233147 AAGGAAAGAGTAGAA TTTTTATATA ATT TATATAAAAA TTTTTATGAATTTAA TERM 1853 1233147 - 1233169 + G 88 -8 -4.94992 | opp_overlap 1233147 AAGGAAAGAGTAGAA TTTTTATATA ATT TATATAAAAA TTTTTATGAATTTAA TERM 1854 1233415 - 1233405 - g 70 -5.4 -4.52747 | CAAAATACAAAAGAA GGTA ATT TACC TGTAGAGAAGATAAC CLD_3455 1232568 - 1233545 + | hypothetical protein TERM 1855 1233684 - 1233738 + F 82 -9 -4.08216 | opp_overlap 1233689 1233690, overlap 1233694 TAAAAGTAAATAGAT TAAAAGTAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTAAGTAGA TTTTAAAAGAAATGA TERM 1856 1233733 - 1233689 - f 100 -17.7 -4.46493 | opp_overlap 1233684 1233694, overlap 1233690 GTAAATAGATTAAAA GTAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTAA GTAGATTTTAAAAGA TERM 1857 1233732 - 1233690 - f 100 -21.2 -3.26811 | opp_overlap 1233684 1233694, overlap 1233689 TAAATAGATTAAAAG TAAATAGCTGATTTAAATTA TTG TAATTTAAATCAGCTATTTA AGTAGATTTTAAAAG TERM 1858 1233694 - 1233728 + F 100 -17.6 -3.71148 | opp_overlap 1233690 1233689, overlap 1233684 TAGATTAAAAGTAAA TAGCTGATTTAAATTA TTG TAATTTAAATCAGCTA TTTAAGTAGATTTTA TERM 1859 1234666 - 1234647 - g 74 -5 -4.98061 | ACATATTAAATAAAA TGCTTGGT GAAA AACAAGCA GGGAGTGATAAAGGA TERM 1860 1235141 - 1235117 - g 75 -4.4 -5.26247 | overlap 1235118 1235119 TTAAAAGAAATAAAA CCTTACCTTT GGAAT AAAGGTAAAA CTTATCCTGCTAATA CLD_3454 1234367 - 1235605 + | putative ABC transporter, solute-binding protein TERM 1861 1235690 - 1235713 + G 70 -6 -4.26903 | opp_overlap 1235690 1235692, overlap 1235692 AGTAGGAATAATAAA TTGCCTAAGT CAAA GCTTAGGCTA TTTTCCTACAGTGGG TERM 1862 1235692 - 1235711 + G 80 -8.6 -3.73756 | opp_overlap 1235690 1235692, overlap 1235690 TAGGAATAATAAATT GCCTAAGT CAAA GCTTAGGC TATTTTCCTACAGTG CLD_3453 1235607 - 1236470 + | ABC transporter, permease protein CLD_3452 1236496 - 1237302 + | ABC transporter, permease protein CLD_3451 1237314 - 1238333 + | ABC transporter, ATP-binding protein CLD_3450 1238635 - 1239594 + | hypothetical protein CLD_3449 1239698 - 1240249 + | acetyltransferase CLD_3448 1240259 - 1240594 + | hypothetical protein TERM 1863 1240637 - 1240597 - f 78 -5.9 -5.09259 | opp_overlap 1240597 1240601, overlap 1240592 TATTTCAAAATAAAA TAAATTTAATTTTAATA GCATAAA TATAAAAATTAAATTTA TTTTGAAATATCCCC TERM 1864 1240648 - 1240664 + F 80 -6.5 -4.9792 | opp_overlap 1240646 1240648 1240649, overlap 1240648 ATTTATTTTGAAATA TCCCCTT TTA GGGGGGA TTTTTATGTGGGCTA TERM 1865 1240661 - 1240649 - f 72 -9.1 -2.61695 | opp_overlap 1240648 1240648, overlap 1240648 1240646 TTTATTTTGAAATAT CCCCT TTT AGGGG GGATTTTTATGTGGG CLD_3447 1240670 - 1240948 + | hypothetical protein CLD_3446 1240949 - 1241545 + | hypothetical protein maa 1241834 - 1242388 + | maltose transacetylase birA 1243659 - 1242676 - | birA bifunctional protein TERM 1866 1242785 - 1242797 + g 74 -6.3 -4.40232 | opp_overlap 1242783 GAGTTTAAACCTACA GCTTT TCC AAAGC TTTCTCTATTTTTGT TERM 1867 1243191 - 1243178 - G 71 -6.7 -3.97042 | opp_overlap 1243190, overlap 1243190 TTATTATTAAGTAAA GCTGT TAAT ACAGC AGCAGCGGCTATTTG CLD_3443 1243823 - 1244026 + | putative heavy metal-binding protein CLD_3442 1244302 - 1244739 + | CBS domain-containing protein TERM 1868 1244720 - 1244759 + F 100 -13.1 -4.68593 | opp_overlap 1244725 1244727, overlap 1244725 1244727 AAAAAGATATTATAA TAAAAGAGGGCAAGAGT TAAAAT ACTCTTGCCCTTCTTTA TTTTTAGATAATAAA TERM 1869 1244725 - 1244755 + F 100 -10.6 -4.89063 | gap 1, opp_overlap 1244725 1244727, overlap 1244720 1244727 GATATTATAATAAAA G-AGGGCAAGAGT TAAAAT ACTCTTGCCCTTC TTTATTTTTAGATAA TERM 1870 1244754 - 1244725 - f 100 -10.8 -4.82819 | opp_overlap 1244725 1244720 1244727, overlap 1244727 GATATTATAATAAAA GAGGGCAAGAGT TAAAAT ACTCTTGCCCTT CTTTATTTTTAGATA TERM 1871 1244752 - 1244727 - f 100 -13.4 -4.02119 | opp_overlap 1244725 1244720 1244727, overlap 1244725 TATTATAATAAAAGA GGGCAAGAGT TAAAAT ACTCTTGCCC TTCTTTATTTTTAGA TERM 1872 1244727 - 1244752 + F 100 -13.4 -4.52502 | opp_overlap 1244727 1244725, overlap 1244725 1244720 TATTATAATAAAAGA GGGCAAGAGT TAAAAT ACTCTTGCCC TTCTTTATTTTTAGA TERM 1873 1245022 - 1245032 + G 78 -4 -5.36364 | opp_overlap 1245022 AGTTATGTTAAATCA GATT TAA AATC TTTTTGTATTTTTAA TERM 1874 1246244 - 1246214 - g 74 -8.4 -3.65314 | overlap 1246205 AAGGCACAGAGATAA TCTTTGAACTTCCT TCT AGGAAGGTTAAAGA AAATGAGAAATGTAA CLD_3441 1244899 - 1246332 + | sensor histidine kinase TERM 1875 1246367 - 1246407 + T 78 -6.3 -4.92791 | opp_overlap 1246368 1246371, overlap 1246368 1246371 TGTTTTTAGTGATAA AGAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTCC TTTTATTATCTTATC TERM 1876 1246406 - 1246368 - T 93 -9.8 -3.91897 | opp_overlap 1246367 1246368 1246371, overlap 1246371 GTTTTTAGTGATAAA GAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTC CTTTTATTATCTTAT TERM 1877 1246368 - 1246406 + T 89 -9.8 -3.54048 | opp_overlap 1246368 1246371, overlap 1246367 1246371 GTTTTTAGTGATAAA GAGGGCGTTTCAAAAT TAAATAT ATTTTGAAACACCTTC CTTTTATTATCTTAT TERM 1878 1246403 - 1246371 - T 79 -10.1 -2.72745 | opp_overlap 1246368 1246367 1246371, overlap 1246368 TTTAGTGATAAAGAG GGCGTTTCAAAAT TAAATAT ATTTTGAAACACC TTCCTTTTATTATCT TERM 1879 1246371 - 1246403 + T 75 -7.9 -3.86445 | opp_overlap 1246371 1246368, overlap 1246368 1246367 TTTAGTGATAAAGAG GGCGTTTCAAAAT TAAATAT ATTTTGAAACACC TTCCTTTTATTATCT CLD_3440 1246569 - 1246444 - | hypothetical protein TERM 1880 1246991 - 1246934 - H 100 -16.1 -4.33675 | opp_overlap 1246937 1246939, overlap 1246939 ATTATATCATTAAAA CAAAATCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGATCTTA TTCAATGTTAAAAGA TERM 1881 1246937 - 1246988 + H 100 -15.6 -3.7347 | opp_overlap 1246934 1246939, overlap 1246939 ATATCATTAAAACAA AATCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGATC TTATTCAATGTTAAA TERM 1882 1246986 - 1246939 - H 100 -16 -5.14626 | opp_overlap 1246939 1246937, overlap 1246934 ATCATTAAAACAAAA TCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGA TCTTATTCAATGTTA TERM 1883 1246939 - 1246986 + H 100 -18.2 -3.44517 | opp_overlap 1246934 1246939, overlap 1246937 ATCATTAAAACAAAA TCTGTCTCCAGATAAAATAAAT TTAA AATTATTTTATTTGGAGACAGA TCTTATTCAATGTTA CLD_3439 1247198 - 1247977 + | hypothetical protein TERM 1884 1248005 - 1248037 + F 74 -5 -5.18355 | opp_overlap 1248005 1248003 TTAGATTTAAGAAGA GTTGCTAATGAT TATTAAAGT ATCTTTAGCAAC TTTTTAATTTTTACA mgtE 1248478 - 1249812 + | magnesium transporter TERM 1885 1249920 - 1249874 - f 100 -22.8 -3.1382 | opp_overlap 1249876 1249879, overlap 1249866 1249876 1249879 TAAATAATTGGAAGA GATAAGCATAGGTATGTTTAAG GCA CTTAAACATACCTATGCTTATT TAAATATATTTTTAA TERM 1886 1249876 - 1249918 + F 100 -25.4 -3.81473 | opp_overlap 1249874 1249866 1249876 1249879, overlap 1249879 AATAATTGGAAGAGA TAAGCATAGGTATGTTTAAG GCA CTTAAACATACCTATGCTTA TTTAAATATATTTTT TERM 1887 1249918 - 1249876 - f 100 -25.4 -3.11727 | opp_overlap 1249876 1249879, overlap 1249874 1249866 1249879 AATAATTGGAAGAGA TAAGCATAGGTATGTTTAAG GCA CTTAAACATACCTATGCTTA TTTAAATATATTTTT TERM 1888 1249915 - 1249879 - f 100 -22.7 -3.6914 | opp_overlap 1249879 1249876, overlap 1249876 1249874 1249866 AATTGGAAGAGATAA GCATAGGTATGTTTAAG GCA CTTAAACATACCTATGC TTATTTAAATATATT TERM 1889 1249879 - 1249915 + F 100 -22.7 -4.00587 | opp_overlap 1249876 1249874 1249866 1249879, overlap 1249876 AATTGGAAGAGATAA GCATAGGTATGTTTAAG GCA CTTAAACATACCTATGC TTATTTAAATATATT TERM 1890 1250424 - 1250457 + F 100 -12.5 -5.0916 | opp_overlap 1250431 TAAGGGTGGCAACGC GAGTCAATCGTCCCT ACTA AGGGATGGTGGACTC TTTTTGTATTACCCA TERM 1891 1251247 - 1251218 - g 74 -7.3 -4.01939 | gap 1 TAACTCATAATGAAA CTTCTACAGGTATT ATG AAT-CCAGTAGAAG AAATAAGTAAAGTCA CLD_3437 1250815 - 1251888 + | aminotransferase, class V serA 1252113 - 1253057 + | D-3-phosphoglycerate dehydrogenase TERM 1892 1253876 - 1253866 - g 72 -2.6 -5.35365 | overlap 1253868 AAAATAGAAGAAAAA TTTA TAG TAAA ACCATATAATCCTAA CLD_3435 1253035 - 1254357 + | hypothetical protein CLD_3434 1254958 - 1256148 + | metallo-beta-lactamase family protein/flavodoxin TERM 1893 1258147 - 1258165 + G 82 -7.6 -4.46212 | overlap 1258162 ATGTAGTAATAATTG TTTACTTA CTG TAAGTAAA TTTTCTGATGGCAGA TERM 1894 1258162 - 1258187 + G 79 -8.5 -3.99592 | opp_overlap 1258166 1258167, overlap 1258147 1258166 TTTACTTACTGTAAG TAAATTTTCTG ATGG CAGAAAGTTTA TTTCTGGTAATAGAT CLD_3433 1256306 - 1260595 + | putative CoA-substrate-specific enzyme activase TERM 1895 1260616 - 1260668 + T 95 -11.8 -3.61591 | gap 1, opp_overlap 1260621 1260642, overlap 1260621 TTTGAAATAAGTAAA TTAA-ATATTAAGGGAGGATACT AAAATAAG AGAATCCTCCCTTAATATATTAA TTATATAACTTTTTC TERM 1896 1260621 - 1260662 + T 100 -13.3 -3.32023 | opp_overlap 1260621 1260642, overlap 1260616 AATAAGTAAATTAAA TATTAAGGGAGGATACT AAAATAAG AGAATCCTCCCTTAATA TATTAATTATATAAC TERM 1897 1260662 - 1260621 - T 100 -13.3 -4.17109 | opp_overlap 1260616 1260621, overlap 1260642 AATAAGTAAATTAAA TATTAAGGGAGGATACT AAAATAAG AGAATCCTCCCTTAATA TATTAATTATATAAC CLD_3432 1262183 - 1260669 - | choline/carnitine/betaine transporter TERM 1898 1261049 - 1261039 - G 80 -6.8 -4.79953 | opp_overlap 1261039 1261037 ATAACAACAAAGAAA GCTG TTT CAGC TCTTTTAATTGCAGT CLD_3431 1262542 - 1263168 + | GntR family transcriptional regulator CLD_3430 1263279 - 1263779 + | hypothetical protein TERM 1899 1263812 - 1263840 + F 100 -9 -5.08086 | GTATTATTTTTTTAG GCTGTTGATAAA CATAT TTTGTCAACGGC TTTTGTATTTTTTAT CLD_3429 1264078 - 1264638 + | putative pyrazinamidase/nicotinamidase CLD_3428 1264796 - 1265107 + | putative phage shock protein CLD_3427 1265182 - 1265646 + | hypothetical protein CLD_3426 1265923 - 1266123 + | hypothetical protein TERM 1900 1266143 - 1266133 - f 73 -2.6 -5.80951 | opp_overlap 1266133 ATTTAAAATAAAAAA TTAA ATT TTAA TAGCTTCTTTCTTAA CLD_3425 1266300 - 1267211 + | TPR repeat-containing protein xpt 1267372 - 1267944 + | xanthine phosphoribosyltransferase TERM 1901 1268114 - 1268153 + F 100 -13.4 -3.36175 | opp_overlap 1268114 1268141, overlap 1268120 ATAGTAAGATAAAAA TTTAAAGTTATAGTTATT ATTA AATAATTATAACTTTAAA TTATAACTGGAAATT TERM 1902 1268153 - 1268114 - f 100 -11.2 -5.13344 | opp_overlap 1268114 1268120, overlap 1268141 ATAGTAAGATAAAAA TTTAAAGTTATAGTTATT ATTA AATAATTATAACTTTAAA TTATAACTGGAAATT TERM 1903 1268120 - 1268147 + F 73 -8 -3.81339 | opp_overlap 1268114 1268141, overlap 1268114 AGATAAAAATTTAAA GTTATAGTTATT ATTA AATAATTATAAC TTTAAATTATAACTG CLD_3423 1268242 - 1268823 + | hypothetical protein TERM 1904 1268998 - 1269027 + F 90 -6.7 -5.79595 | opp_overlap 1269025, overlap 1268988 TCAACCTATAAGTTT TAGTTATAGTTGA TGAT TTAACTATAATTA TTTTTTATTTTAAAA TERM 1905 1270049 - 1270029 - g 70 -3.9 -5.02606 | CATCAAATAAGAAAA CTCCAGTAG ATT CTTTTGGAG TAGCGGTACCTCTAA CLD_3422 1269119 - 1270501 + | putative thiosulfate sulfurtransferase CLD_3421 1270697 - 1271119 + | hypothetical protein TERM 1906 1271146 - 1271177 + F 73 -5.3 -4.77775 | gap 1 AAATTGTTAATAATT TAAGCCAGTGG-AG TTTTT CTGCTATTGGCTTA TTTATTTTATAAGAT CLD_3420 1271463 - 1272566 + | putative transporter TERM 1907 1272611 - 1272646 + F 76 -2 -5.8187 | AAAGTTAGTAAAAAA TATATCCTAGGAAATA TAAT TAATTTATGGGATATA TTTTTTTATTCACTA CLD_3419 1272746 - 1273075 + | MazG family protein TERM 1908 1273104 - 1273083 - f 78 -6.1 -5.03201 | overlap 1273077 AAGAATAATTAAAAA TTTTATAAA GTTT TTTATAAAA TGAATAATAAATACT CLD_3418 1273212 - 1274951 + | hypothetical protein TERM 1909 1274974 - 1274947 - f 70 -7.2 -3.79677 | overlap 1274945 1274949 AAGAAATAAAGAATA TATAGGTTATTA ATTA TAATAACCTAAA GATAAAGAACATTGA TERM 1910 1274972 - 1274949 - f 87 -9.8 -3.44389 | overlap 1274947 1274945 GAAATAAAGAATATA TAGGTTATTA ATTA TAATAACCTA AAGATAAAGAACATT TERM 1911 1275044 - 1275079 + F 81 -7 -4.78149 | gap 1, overlap 1275068 ATTAAAAATTTTTTA TCCAGGAGAGGAATC ATTTTTA GATTCA-CTCCTGGA TTTTTACGTTCTAGG CLD_3417 1275714 - 1275854 + | hypothetical protein TERM 1912 1275900 - 1275863 - f 78 -4.4 -5.45802 | opp_overlap 1275863 GCTTTAAAATAAAAA TAAACATTCATAAC TAAATATGAT GTTGTGAATGTTTA TTTTTATTTTATTAT TERM 1913 1275863 - 1275900 + F 90 -6.6 -5.64321 | opp_overlap 1275863 GCTTTAAAATAAAAA TAAACATTCATAAC TAAATATGAT GTTGTGAATGTTTA TTTTTATTTTATTAT TERM 1914 1276143 - 1276123 - g 72 -6.3 -4.34993 | opp_overlap 1276139, overlap 1276114 GAAATATTAAAACAA TTTAAATCT GGA AGATCTAAA GCCTTAGTGTTTTTA TERM 1915 1276751 - 1276726 - g 72 -8.5 -3.3363 | opp_overlap 1276726 1276733, overlap 1276733 GTAATAATAACGGAA GAAAAACCTAT TATA ATAGATTTTTC TGATTTGCTTAAGGA CLD_3416 1276036 - 1277235 + | hypothetical protein TERM 1916 1277352 - 1277376 + F 100 -7.9 -5.67967 | opp_overlap 1277345 TAAATTTATAAAAAA GATTGTTGCAC TCT GTGTAGCAGTC TTTTTTTCTACTCAT CLD_3415 1277627 - 1278673 + | ABC transporter, substrate-binding protein TERM 1917 1278692 - 1278719 + GF 73 -5.6 -4.60713 | opp_overlap 1278690 1278694, overlap 1278693 1278694 GAACAGGAAAAAATT AAGGGTATCTAA TAAA TTAGATACCCAA TTTTATAATATTTTA TERM 1918 1278693 - 1278718 + GF 78 -9.1 -3.34801 | opp_overlap 1278690 1278694, overlap 1278692 1278694 AACAGGAAAAAATTA AGGGTATCTAA TAAA TTAGATACCCA ATTTTATAATATTTT TERM 1919 1278694 - 1278717 + GF 100 -12.6 -2.59254 | opp_overlap 1278690 1278694, overlap 1278693 1278692 ACAGGAAAAAATTAA GGGTATCTAA TAAA TTAGATACCC AATTTTATAATATTT TERM 1920 1278717 - 1278694 - gf 100 -12.6 -3.9735 | opp_overlap 1278694 1278693 1278692, overlap 1278690 ACAGGAAAAAATTAA GGGTATCTAA TAAA TTAGATACCC AATTTTATAATATTT TERM 1921 1278744 - 1278768 + GF 74 -8.1 -3.36868 | opp_overlap 1278742, overlap 1278742 1278741 1278751 ATTTTAGATAAGATT CTAATAGTATT TAT AATATTATTAG TACTTTTATTTATAT CLD_3414 1278675 - 1280363 + | ABC transporter, permease protein CLD_3413 1280326 - 1281261 + | ABC transporter, ATP-binding protein TERM 1922 1281307 - 1281265 - T 83 -7.3 -4.98531 | gap 1, opp_overlap 1281265 TTTTTAAATTAAAAA GGATTTATTGCTAAGAAATA TTTT TA-TACTTAGCAGTAAATCC TTTGTTCTTATGTGA TERM 1923 1281265 - 1281307 + T 93 -9.5 -4.55093 | gap 1, opp_overlap 1281265 TTTTTAAATTAAAAA GGATTTATTGCTAAGAAATA TTTT TA-TACTTAGCAGTAAATCC TTTGTTCTTATGTGA CLD_3412 1282120 - 1281326 - | hypothetical protein TERM 1924 1281619 - 1281631 + g 81 -4.9 -5.37865 | CCTTCAAATAGCTTT CAAAT TTA ATTTG TTTTTTCATTATTAA CLD_3411 1282417 - 1283583 + | hypothetical protein rpsA 1283981 - 1285144 + | ribosomal protein S1 TERM 1925 1285177 - 1285215 + F 84 -9.3 -3.66117 | gap 2, opp_overlap 1285176 1285174 1285172, overlap 1285174 1285191 TAATTTAAGAGATAT GCATTACTAAAACACTTAT ATA AT-AG-GTTTTAGTAATGC TATTTATATAATTAC CLD_3409 1285327 - 1285746 + | thioesterase family protein CLD_3408 1285918 - 1286334 + | hypothetical protein TERM 1926 1286885 - 1286859 - f 71 -8.3 -3.07401 | overlap 1286857 1286855 AAAATATTATATAGA TTTATAATCTA ACAAG TAGATTATAAA AATAGGTTAGATGAA TERM 1927 1287060 - 1287076 + F 72 -5.9 -4.47183 | opp_overlap 1287070 GTAGGAGATATTGTA GTCTTTA AAT TAAAGGC TTTATTTGAGTACTC TERM 1928 1287089 - 1287105 + F 100 -7.3 -6.02919 | GGCTTTATTTGAGTA CTCTTCT GCT AGAAGGG TTTTTTTATTTATGC CLD_3407 1287204 - 1288211 + | putative ABC transporter, substrate-binding protein TERM 1929 1288337 - 1288353 + GF 74 -7.9 -3.78775 | ACCTTTCCTTTAGGA GCAGCTG TTG CAGCAGC TTTCCTAGTAAAAGG CLD_3406 1288211 - 1289116 + | ABC transporter, permease protein TERM 1930 1289803 - 1289790 - gf 89 -3.9 -6.13503 | GAGGAAGAAAAAAAA TCTTT AACT AAAGA AAAATTATTAAAATG CLD_3405 1289079 - 1289873 + | ABC transporter, ATP-binding protein TERM 1931 1289947 - 1289964 + F 86 -9.1 -4.48713 | opp_overlap 1289947 1289946 ATTCATCTATAATAG GCAGCTC TTAG GGGCTGC TTTATTATTACTAAA TERM 1932 1290347 - 1290382 + G 80 -2.1 -5.73978 | gap 1, opp_overlap 1290357, overlap 1290337 1290339 1290349 1290351 1290357 GAGAAGCTTTCTAAG GC-TTTAGGAATAAAT TATTT ATTTATTTCTATATGC TTTTTTATTTATGCT CLD_3404 1290203 - 1290505 + | hypothetical protein TERM 1933 1290519 - 1290560 + F 100 -11.9 -4.64657 | opp_overlap 1290526, overlap 1290520 AAAAATATAATTTAT ATTAAAAGTGCTGATTTAT GTAA ATAAACCAGCACTTTTAAG TTTTTACAAATTTAC TERM 1934 1290520 - 1290559 + F 100 -15.4 -3.38071 | opp_overlap 1290526, overlap 1290519 AAAATATAATTTATA TTAAAAGTGCTGATTTAT GTAA ATAAACCAGCACTTTTAA GTTTTTACAAATTTA TERM 1935 1290553 - 1290526 - f 100 -12.2 -4.36931 | opp_overlap 1290520 1290519 TAATTTATATTAAAA GTGCTGATTTAT GTAA ATAAACCAGCAC TTTTAAGTTTTTACA asdA 1290938 - 1292581 + | aspartate 4-decarboxylase TERM 1936 1292619 - 1292669 + T 100 -11 -4.14511 | opp_overlap 1292624 1292662, overlap 1292624 TAATAGAGAAAATTT CAAAATAGATTTAATTTTAATATT TGT GGTGTTAAAATTAAATCTATTTTA TTTTAAAATAAGCTT TERM 1937 1292664 - 1292624 - T 75 -7.3 -4.29656 | opp_overlap 1292624 1292619, overlap 1292662 GAGAAAATTTCAAAA TAGATTTAATTTTAATA TTTGTGG TGTTAAAATTAAATCTA TTTTATTTTAAAATA TERM 1938 1292624 - 1292664 + T 100 -10.9 -5.09259 | opp_overlap 1292624 1292662, overlap 1292619 GAGAAAATTTCAAAA TAGATTTAATTTTAATATT TGT GGTGTTAAAATTAAATCTA TTTTATTTTAAAATA CLD_3402 1293589 - 1292708 - | hypothetical protein TERM 1939 1293387 - 1293398 + g 70 -4.4 -4.85433 | overlap 1293365 GTAAATAAAAATACT GGAA TATC TTCC TTTTTCAGTTTGTAT TERM 1940 1293888 - 1293919 + H 95 -12.4 -3.62522 | TAAACAGGGTTCTTG GCTTTAGAGGGAGT TTTT ACTTCCACTAAAGC TTATTAACAGACTTC TERM 1941 1293924 - 1293963 + H 100 -14.6 -2.90496 | gap 1, opp_overlap 1293927 1293929, overlap 1293928 1293929 1293931 1293931 TCCACTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAA TERM 1942 1293960 - 1293927 - H 93 -11.9 -3.20747 | gap 1, opp_overlap 1293924 1293928 1293929 1293931 1293931, overlap 1293929 ACTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGAGA TERM 1943 1293928 - 1293960 + H 95 -12.1 -3.60151 | opp_overlap 1293927 1293929, overlap 1293924 1293929 1293931 1293931 CTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGAGA TERM 1944 1293959 - 1293929 - H 100 -15.6 -3.16288 | opp_overlap 1293929 1293928 1293924 1293931 1293931, overlap 1293927 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1945 1293929 - 1293959 + H 100 -15.6 -2.75769 | opp_overlap 1293927 1293929, overlap 1293928 1293924 1293931 1293931 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 1946 1293931 - 1293957 + H 89 -12.4 -2.92144 | opp_overlap 1293929 1293927, overlap 1293931 1293929 1293928 1293924 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 1947 1294157 - 1294107 - H 100 -14.5 -2.9957 | opp_overlap 1294107 1294108 1294110, overlap 1294091 1294110 1294120 1294124 AAAAAATATATGATA TTATTTACTTAAACAAATGCTTA TTACG TAAGCATTTGTTTAAGTAAATGG TTTTTGAGGGGATAA TERM 1948 1294107 - 1294157 + H 100 -19.6 -4.57569 | opp_overlap 1294091 1294107 1294110 1294120 1294124, overlap 1294108 1294110 AAAAAATATATGATA TTATTTACTTAAACAAATGCTTAT TAC GTAAGCATTTGTTTAAGTAAATGG TTTTTGAGGGGATAA TERM 1949 1294108 - 1294156 + H 100 -20.9 -3.3422 | opp_overlap 1294091 1294107 1294110 1294120 1294124, overlap 1294107 1294110 AAAAATATATGATAT TATTTACTTAAACAAATGCTTAT TAC GTAAGCATTTGTTTAAGTAAATG GTTTTTGAGGGGATA TERM 1950 1294110 - 1294154 + H 100 -21.3 -3.23708 | opp_overlap 1294091 1294107 1294110 1294120 1294124, overlap 1294108 1294107 AAATATATGATATTA TTTACTTAAACAAATGCTTAT TAC GTAAGCATTTGTTTAAGTAAA TGGTTTTTGAGGGGA TERM 1951 1294154 - 1294110 - H 100 -20.6 -2.70522 | opp_overlap 1294110 1294108 1294107, overlap 1294091 1294107 1294120 1294124 AAATATATGATATTA TTTACTTAAACAAATGCTTA TTACG TAAGCATTTGTTTAAGTAAA TGGTTTTTGAGGGGA TERM 1952 1294144 - 1294120 - H 90 -10.2 -3.67296 | opp_overlap 1294110 1294108 1294107, overlap 1294110 1294107 1294124 TATTATTTACTTAAA CAAATGCTTA TTACG TAAGCATTTG TTTAAGTAAATGGTT CLD_3401 1294175 - 1295272 + | PfkB family kinase TERM 1953 1295394 - 1295382 - g 83 -7.7 -4.64766 | opp_overlap 1295382, overlap 1295390 GCCATATCCTAAAAA TGCAG AAA CTGCA TTAAATGTAGAAAAA CLD_3400 1295266 - 1296189 + | indigoidine synthase A family protein TERM 1954 1296480 - 1296505 + F 70 -2.6 -5.4588 | ATAAATTTTAAAAAA TTAGGCCT AAGATAATAA GGGCCTAA TTTTTTATGCTTTTA panE 1296681 - 1297592 + | 2-dehydropantoate 2-reductase TERM 1955 1298447 - 1298435 - g 81 -4.9 -5.42131 | TAATGATATAAAAAA TTCTT TGG AAGAA GAAATCAACACCTTA fchA 1297902 - 1298534 + | methenyltetrahydrofolate cyclohydrolase folD 1298534 - 1299382 + | methylenetetrahydrofolate dehydrogenase TERM 1956 1299401 - 1299442 + F 73 -4.6 -5.22006 | opp_overlap 1299405, overlap 1299404 1299405 TAAAAATTAAAAAGT AAAGCCTGTATCTTATGT TAGTTT ATATAGGATACAGGATTA TTTTTCTTATAATAA TERM 1957 1299404 - 1299439 + F 74 -6.3 -4.68512 | opp_overlap 1299405, overlap 1299401 1299405 AAATTAAAAAGTAAA GCCTGTATCTTATGT TAGTTT ATATAGGATACAGGA TTATTTTTCTTATAA TERM 1958 1299405 - 1299438 + F 87 -9.8 -3.39481 | opp_overlap 1299405, overlap 1299404 1299401 AATTAAAAAGTAAAG CCTGTATCTTATGT TAGTTT ATATAGGATACAGG ATTATTTTTCTTATA TERM 1959 1299647 - 1299631 - f 70 -3.1 -5.42265 | overlap 1299633 GGAAAGTAGAAAAAA CATATTT TTT AAATATA GAAATTATATGGGAT CLD_3396 1299702 - 1300496 + | HAD family hydrolase TERM 1960 1300561 - 1300608 + T 86 -9.6 -3.93597 | gap 1, opp_overlap 1300562 1300566 1300570, overlap 1300562 1300566 1300570 TAAAATTTAATAACT ATAAATAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTATTTAC TTTAATCTAATTTTT TERM 1961 1300562 - 1300607 + T 95 -13.1 -2.94532 | gap 1, opp_overlap 1300562 1300566 1300570, overlap 1300561 1300566 1300570 AAAATTTAATAACTA TAAATAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTATTTA CTTTAATCTAATTTT TERM 1962 1300607 - 1300562 - T 95 -13.1 -2.98003 | gap 1, opp_overlap 1300562 1300561 1300566 1300570, overlap 1300566 1300570 AAAATTTAATAACTA TAAATAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTATTTA CTTTAATCTAATTTT TERM 1963 1300566 - 1300603 + T 86 -9.5 -4.12738 | gap 1, opp_overlap 1300562 1300566 1300570, overlap 1300562 1300561 1300570 TTTAATAACTATAAA TAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTA TTTACTTTAATCTAA TERM 1964 1300603 - 1300566 - T 86 -9.5 -4.14257 | gap 1, opp_overlap 1300566 1300562 1300561 1300570, overlap 1300562 1300570 TTTAATAACTATAAA TAAACACTATCAAAATCT ATT AGAA-TTGATAGTGTTTA TTTACTTTAATCTAA TERM 1965 1300599 - 1300570 - T 74 -5.9 -4.63526 | gap 1, opp_overlap 1300570 1300566 1300562 1300561, overlap 1300566 1300562 ATAACTATAAATAAA CACTATCAAAATCT ATT AGAA-TTGATAGTG TTTATTTACTTTAAT TERM 1966 1300570 - 1300599 + T 74 -5.9 -4.63675 | gap 1, opp_overlap 1300566 1300562 1300570, overlap 1300566 1300562 1300561 ATAACTATAAATAAA CACTATCAAAATCT ATT AGAA-TTGATAGTG TTTATTTACTTTAAT CLD_3395 1301229 - 1300723 - | putative diamine N-acetyltransferase TERM 1967 1300901 - 1300912 + g 74 -3 -5.39221 | AGATAGATTTCATTA CAAT CTTT ATTG TTTTTTAATTCTTCT TERM 1968 1301485 - 1301469 - g 81 -8.1 -4.29928 | AACTAACAGTGAAAA TAGTAGA AAT TCTACTA CAGGATATATGGATA CLD_3394 1301410 - 1301553 + | hypothetical protein CLD_3393 1301669 - 1302400 + | hypothetical protein CLD_3392 1302520 - 1303329 + | ZIP family zinc transporter TERM 1969 1303342 - 1303373 + F 100 -16 -3.62522 | opp_overlap 1303335, overlap 1303343 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCACTCTGAAGC TTATTAACAGAATTC TERM 1970 1303378 - 1303417 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1303335 1303386, overlap 1303382 1303383 1303385 CACTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 1971 1303383 - 1303413 + F 79 -9.8 -2.75769 | opp_overlap 1303386, overlap 1303382 1303378 1303385 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 1972 1303410 - 1303386 - f 90 -10.1 -3.71552 | opp_overlap 1303385 1303383 1303382 1303378 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 1973 1303613 - 1303584 - f 72 -5.1 -5.00196 | opp_overlap 1303576 1303584, overlap 1303579 1303576 TCTTAAATAAGAAAA TACTATGATACAA TAGG TAGTTTCATAGTA TTTTTTATTTAAAAA TERM 1974 1303584 - 1303613 + F 84 -5.1 -5.63517 | opp_overlap 1303584 1303579 1303576, overlap 1303576 TCTTAAATAAGAAAA TACTATGATACAA TAGG TAGTTTCATAGTA TTTTTTATTTAAAAA CLD_3391 1304001 - 1304438 + | rrf2 family protein TERM 1975 1304790 - 1304777 - g 76 -2.5 -5.58074 | TAATTATGAAAAAAA TATAT AAAA ATATA ACAGAATTAATAGGA cysK 1304767 - 1305696 + | cysteine synthase A CLD_3389 1305741 - 1306409 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 1976 1306799 - 1306783 - g 90 -6.7 -5.62045 | ACAGATAAGAAAAAA GAAAAAT ATT ATTTTTC AAAACCTTATGTTTA CLD_3388 1306444 - 1307268 + | polar amino acid ABC transporter amino acid-binding protein TERM 1977 1307276 - 1307266 - f 70 -2.6 -5.59502 | opp_overlap 1307266 GAAAAAAGTAAAAAA TAAA TTA TTTA TTTGATTAAAGTTAA CLD_3387 1307372 - 1308502 + | cysteine desulfurase TERM 1978 1308828 - 1308815 - g 70 -5.3 -4.54026 | TGGGAAATAAAAGAA GCTAA AGAA TTAGC AAATAACATAGGAAT CLD_3386 1308617 - 1309435 + | hypothetical protein TERM 1979 1309573 - 1309617 + F 90 -11.7 -3.08133 | gap 2, opp_overlap 1309584 TTATCCGATGACTAC CCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAG-AGAGCGG TTACGTCCCTAGATA TERM 1980 1309690 - 1309651 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1309658 1309687, overlap 1309654 1309655 1309657 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 1981 1309685 - 1309655 - f 79 -9.8 -2.75769 | opp_overlap 1309658, overlap 1309654 1309651 1309657 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 1982 1309658 - 1309682 + F 90 -10.1 -3.71552 | opp_overlap 1309657 1309655 1309654 1309651 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 1983 1309726 - 1309695 - f 95 -11.6 -3.62522 | opp_overlap 1309687, overlap 1309714 GAATTCTGTTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA CLD_3385 1309771 - 1309899 + | hypothetical protein trmU 1310016 - 1311086 + | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 1984 1311136 - 1311092 - T 100 -11.1 -4.67692 | opp_overlap 1311099, overlap 1311097 1311099 TGAAAAGTAAAGAAA TAAAAGAGATTCTCAAAATAA AAT CTATTTTGAGAATCTTTTTTT TATTTAAATATATTT TERM 1985 1311131 - 1311097 - T 100 -11 -5.20222 | opp_overlap 1311099, overlap 1311092 1311099 AGTAAAGAAATAAAA GAGATTCTCAAAATAA AAT CTATTTTGAGAATCTT TTTTTTATTTAAATA TERM 1986 1311129 - 1311099 - T 100 -13.6 -4.20284 | opp_overlap 1311099, overlap 1311097 1311092 TAAAGAAATAAAAGA GATTCTCAAAATAA AAT CTATTTTGAGAATC TTTTTTTTATTTAAA TERM 1987 1311099 - 1311129 + T 100 -12.9 -6.23545 | opp_overlap 1311099 1311097 1311092 TAAAGAAATAAAAGA GATTCTCAAAATA AAATC TATTTTGAGAATC TTTTTTTTATTTAAA CLD_3383 1311377 - 1311252 - | hypothetical protein CLD_3382 1311649 - 1312368 + | LytTr family DNA-binding response regulator CLD_3381 1312582 - 1312400 - | hypothetical protein CLD_3380 1312365 - 1313708 + | sensor histidine kinase TERM 1988 1313887 - 1313841 - fH 100 -21.3 -3.93026 | opp_overlap 1313841 AATATCTTAATCAAA GGGCACTTGCAAATATTAGAT TTTTT ATTTAATATTTGCAAGTGCCC TTTAAAAAGAGTGTT TERM 1989 1313841 - 1313887 + FH 100 -23.5 -3.54307 | opp_overlap 1313841 AATATCTTAATCAAA GGGCACTTGCAAATATTAGAT TTTTT ATTTAATATTTGCAAGTGCCC TTTAAAAAGAGTGTT bcrA 1314082 - 1314996 + | bacitracin ABC transporter, ATP-binding protein BcrA CLD_3378 1314998 - 1315741 + | hypothetical protein CLD_3377 1316344 - 1318230 + | glycerophosphoryl diester phosphodiesterase family protein CLD_3376 1318391 - 1318555 + | hypothetical protein TERM 1990 1318539 - 1318595 + T 91 -10.6 -3.6393 | gap 1, opp_overlap 1318553, overlap 1318543 1318553 CCAAAGAATGGGTAG ATACTAATCAAAAATAGAAGGG-AACT TATA AGTTTCCCTTCTATTTTTGATTTATAC TATTTATCTGCTAAA TERM 1991 1318543 - 1318592 + T 100 -14.2 -2.92896 | gap 2, opp_overlap 1318553, overlap 1318539 1318553 AGAATGGGTAGATAC T-AATCAAAAATAGAAGGG-AACT TATA AGTTTCCCTTCTATTTTTGATTTA TACTATTTATCTGCT TERM 1992 1318553 - 1318581 + T 100 -9.8 -5.05505 | gap 1, opp_overlap 1318553, overlap 1318543 1318539 GATACTAATCAAAAA TAGAAGGG-AACT TATA AGTTTCCCTTCTA TTTTTGATTTATACT TERM 1993 1318581 - 1318553 - T 100 -9.8 -4.91873 | gap 1, opp_overlap 1318543 1318539 1318553 GATACTAATCAAAAA TAGAAGGG-AACT TATA AGTTTCCCTTCTA TTTTTGATTTATACT CLD_3375 1322113 - 1318595 - | pyruvate ferredoxin oxidoreductase TERM 1994 1320490 - 1320509 + g 70 -5.2 -4.53765 | opp_overlap 1320490 1320493 TAGATATACCATCAA TAATATAA AAAT TTATATTA TTTTCTGCTATATAT TERM 1995 1321351 - 1321335 - G 70 -5.1 -4.59414 | CCATAATAATCAAAA GGATGAT AGG ATCTTCC ACTAATTTTTTCTAT TERM 1996 1321993 - 1322025 + g 76 -9.2 -3.08133 | overlap 1321996 GAGCCGACCACTCGT CTACACCTTCTGCC ATAGG GGTGGAAGGTGTAA TTGGATAGATAGCTG TERM 1997 1321996 - 1322022 + g 82 -10.9 -2.75712 | overlap 1321993 CCGACCACTCGTCTA CACCTTCTGCC ATAGG GGTGGAAGGTG TAATTGGATAGATAG CLD_3374 1322417 - 1323037 + | TetR family transcriptional regulator CLD_3373 1323043 - 1324290 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 1998 1324325 - 1324354 + F 85 -10.2 -3.12856 | gap 1, opp_overlap 1324325 1324329, overlap 1324323 1324322 AAAAGAGCAAATGAA CTTAGAGAGCACT AATAC AGTGCTCTC-AAG TAGTTTATCTTAATT TERM 1999 1324354 - 1324325 - f 95 -10.9 -3.64099 | gap 1, opp_overlap 1324325 1324323 1324322, overlap 1324329 AAAAGAGCAAATGAA CTTAGAGAGCACTA ATA CAGTGCTCTC-AAG TAGTTTATCTTAATT TERM 2000 1324351 - 1324329 - f 90 -12.8 -2.64134 | opp_overlap 1324325 1324323 1324322, overlap 1324325 GAGCAAATGAACTTA GAGAGCACTA ATA CAGTGCTCTC AAGTAGTTTATCTTA TERM 2001 1324662 - 1324648 - f 79 -7.2 -4.64766 | opp_overlap 1324647 1324642 1324648 TTTATATCTGAAAAA TCATAG AAA CTATGA GTTTTATTTCATGTA CLD_3372 1324718 - 1326193 + | hypothetical protein TERM 2002 1326242 - 1326194 - f 100 -14.4 -3.17392 | opp_overlap 1326201, overlap 1326201 TATTGTGGAACCTAA TACAAAATGAGCTAGTAAAA TATATTAAG TTTTACTAGCTCATTTTATA TAAAAATATAATAGA TERM 2003 1326201 - 1326235 + F 100 -12.4 -4.53303 | opp_overlap 1326194 1326201 GAACCTAATACAAAA TGAGCTAGTAAAATAT ATT AAGTTTTACTAGCTCA TTTTATATAAAAATA TERM 2004 1326235 - 1326201 - f 100 -10.3 -4.7033 | opp_overlap 1326201, overlap 1326194 GAACCTAATACAAAA TGAGCTAGTAAAA TATATTAAG TTTTACTAGCTCA TTTTATATAAAAATA TERM 2005 1326363 - 1326351 - f 73 -3.5 -5.5454 | overlap 1326362 CGAAATAAATAAAAA TAATA ACA TATTA ACTAATATTAGTTAC TERM 2006 1326630 - 1326656 + F 71 -8.3 -3.06583 | opp_overlap 1326629, overlap 1326634 TTTAATATAAAAGGC TTAATCTTATA CCTAA TATAAGATTAA TATTAACAATGTTAT TERM 2007 1327100 - 1327117 + G 70 -6.3 -4.15222 | gap 1, overlap 1327100 TATATAGATACTTTT GGG-CTAG AAA CTAGACCC TTTGTTCAGGAAAAT CLD_3371 1326704 - 1328413 + | amine oxidase, flavin-containing TERM 2008 1328417 - 1328450 + T 86 -9.2 -4.14908 | opp_overlap 1328417 1328421, overlap 1328421 TATAAAGCTTAGGAA TAAAGAAGTATATT TTATTT AATATGCTTCTTTA TTTATGCTTATATTT TERM 2009 1328421 - 1328446 + T 71 -5.6 -4.63526 | opp_overlap 1328421 1328417, overlap 1328417 AAGCTTAGGAATAAA GAAGTATATT TTATTT AATATGCTTC TTTATTTATGCTTAT TERM 2010 1328505 - 1328493 - T 70 -4.9 -4.8048 | opp_overlap 1328484 CCTTTATATTAAAAA TATCT TTT AGATA TGAAAACGAATAAGT TERM 2011 1328626 - 1328637 + T 82 -4.4 -5.63517 | TCTAAAATCTTACCT GCTT ATTT AAGC TTTTTTATTTAGCGA CLD_3370 1329548 - 1328658 - | AraC family transcriptional regulator CLD_3369 1329748 - 1331124 + | sugar transporter TERM 2012 1331752 - 1331732 - g 71 -4.7 -4.8048 | overlap 1331734 GTTGCAGATCAAAAA TTCCCATCT TGT AGATGGACA GGAGAGCAATTGAGA CLD_3368 1331138 - 1332466 + | O-glycosyl hydrolase, family protein TERM 2013 1332476 - 1332496 + F 85 -8.2 -4.62336 | opp_overlap 1332474 1332476 GAATAATTATTAAGA GGATGCCC AGGTA GGGCTTCC TTTTTCAAATAAGCT TERM 2014 1332496 - 1332476 - f 72 -8.2 -3.22756 | opp_overlap 1332476, overlap 1332474 GAATAATTATTAAGA GGATGCCC AGGTA GGGCTTCC TTTTTCAAATAAGCT CLD_3367 1332529 - 1333470 + | ROK family protein CLD_3366 1333473 - 1334918 + | glycosy hydrolase family protein TERM 2015 1334999 - 1334961 - f 100 -13.6 -3.76759 | opp_overlap 1334961 1334965, overlap 1334965 AGGAATTTGATGAAA TAAATAGTGTAATAGTTT TAT AAACTATTACATTATTTA TTTTATAGAAAAAGG TERM 2016 1334961 - 1334999 + F 100 -15.8 -4.36914 | opp_overlap 1334961 1334965, overlap 1334965 AGGAATTTGATGAAA TAAATAGTGTAATAGTTT TAT AAACTATTACATTATTTA TTTTATAGAAAAAGG TERM 2017 1334995 - 1334965 - f 100 -10 -4.49958 | opp_overlap 1334961 1334965, overlap 1334961 ATTTGATGAAATAAA TAGTGTAATAGTTT TAT AAACTATTACATTA TTTATTTTATAGAAA TERM 2018 1334965 - 1334995 + F 100 -12.2 -4.77173 | opp_overlap 1334965 1334961, overlap 1334961 ATTTGATGAAATAAA TAGTGTAATAGTTT TAT AAACTATTACATTA TTTATTTTATAGAAA amyB 1335540 - 1337168 + | beta-amylase TERM 2019 1337545 - 1337531 - f 71 -5.6 -4.70772 | opp_overlap 1337544 ACATATCTAATAAAA CGAGGT GGT ACCACG TGAGTATAACTCCCG TERM 2020 1337586 - 1337555 - f 74 -8.1 -3.4178 | gap 1, opp_overlap 1337544 1337556, overlap 1337556 ACCACGTGAGTATAA CTCCCGTCCTCTAG TTAAG CTAGAG-ACGGGAT TTTTTGCATTTAAAA TERM 2021 1337585 - 1337556 - f 86 -11.6 -2.64747 | gap 1, opp_overlap 1337544 1337556, overlap 1337555 CCACGTGAGTATAAC TCCCGTCCTCTAG TTAAG CTAGAG-ACGGGA TTTTTTGCATTTAAA TERM 2022 1337556 - 1337585 + F 100 -12.3 -5.22039 | gap 1, opp_overlap 1337556 1337555, overlap 1337544 CCACGTGAGTATAAC TCCCGTCCTCTAGT TAA GCTAGAG-ACGGGA TTTTTTGCATTTAAA TERM 2023 1339100 - 1339086 - g 78 -4.3 -5.38497 | overlap 1339092 1339094 ATGTAAAGTAAAAAA TGAAG ACATA CTTCA AGTAGGAAAGAAGAA tyrS 1337941 - 1339143 + | tyrosyl-tRNA synthetase TERM 2024 1339234 - 1339207 - f 93 -8.7 -4.77216 | opp_overlap 1339207, overlap 1339194 1339191 AATAATATTTAAAAA CATTATCATTT AATTTA AAATGATAATG TTTTTTTATGAGATT TERM 2025 1339207 - 1339234 + F 100 -8.7 -5.63504 | opp_overlap 1339194 1339191 1339207 AATAATATTTAAAAA CATTATCATTT AATTTA AAATGATAATG TTTTTTTATGAGATT TERM 2026 1339700 - 1339690 - g 91 -4 -6.07374 | AGAAAAAAGAAAAAA CAAA TTT TTTG ATAGCTACATTTTAA CLD_3363 1339427 - 1339798 + | GntR family transcriptional regulator CLD_3362 1339791 - 1340663 + | ABC transporter, ATP-binding protein CLD_3361 1340664 - 1341410 + | hypothetical protein TERM 2027 1341517 - 1341477 - T 86 -7.8 -4.8743 | gap 1, opp_overlap 1341477 TGTAAAATAAATAAA TTTAAGCTTCAAG-GGAGT TAAA ACTCTACTAGAAGCTTAAA TTTTTTTGTATAAAA TERM 2028 1341477 - 1341517 + T 100 -10 -5.71712 | gap 1, opp_overlap 1341477 TGTAAAATAAATAAA TTTAAGCTTCAAG-GGAGT TAAA ACTCTACTAGAAGCTTAAA TTTTTTTGTATAAAA CLD_3360 1341914 - 1341546 - | hypothetical protein TERM 2029 1341833 - 1341823 - G 78 -6.8 -4.66953 | opp_overlap 1341823, overlap 1341824 CCAACAGGGGAAAAA CCAC CTT GTGG TGTCATAAAAGGTGG CLD_3359 1341919 - 1342095 + | hypothetical protein TERM 2030 1342653 - 1342635 - g 73 -6 -4.52857 | AGGTGTTATAGAAAA TGGTGTTC CTA GAACAGCA AAATTATTTATAAGT TERM 2031 1343021 - 1343005 - g 70 -3.7 -5.07523 | overlap 1342996 GATATACAAAGAAAA CCTTGTT TTG AAAAAGG TGTAAAAGTTTTTGA CLD_3358 1342252 - 1343145 + | hypothetical protein TERM 2032 1343188 - 1343227 + F 100 -15.4 -4.62471 | opp_overlap 1343181 1343193 1343196, overlap 1343191 ATAATAAATAATGCT TAAGATAATTTAGGAGAA GGAT TTCTCCTAAATTATCTAA TTTTATATGTGGATT TERM 2033 1343191 - 1343224 + F 100 -17.1 -3.24281 | opp_overlap 1343181 1343193 1343196, overlap 1343188 ATAAATAATGCTTAA GATAATTTAGGAGAA GGAT TTCTCCTAAATTATC TAATTTTATATGTGG TERM 2034 1343222 - 1343193 - f 100 -13.9 -3.08349 | opp_overlap 1343191 1343188, overlap 1343181 1343196 AAATAATGCTTAAGA TAATTTAGGAGAA GGAT TTCTCCTAAATTA TCTAATTTTATATGT TERM 2035 1343219 - 1343196 - f 95 -11.2 -3.67498 | opp_overlap 1343191 1343188, overlap 1343193 1343181 TAATGCTTAAGATAA TTTAGGAGAA GGAT TTCTCCTAAA TTATCTAATTTTATA TERM 2036 1344170 - 1344160 - g 91 -5.4 -5.89659 | AGAAAAAAAGAAAAA GCTT CCT AAGC TAAATATTGAATTGA TERM 2037 1344480 - 1344469 - g 89 -4.4 -5.85737 | overlap 1344475 AGAGGAAGAAAAAAA GGAA AAGC TTCC TAAGCTAAATATTGA TERM 2038 1344485 - 1344475 - g 74 -5.4 -4.96276 | overlap 1344469 AGAAAAAAAGGAAAA GCTT CCT AAGC TAAATATTGAATTGA TERM 2039 1345430 - 1345420 - g 91 -5.4 -5.89659 | AGAAAAAAAGAAAAA GCTT CCT AAGC TAAATATTGAATTGA CLD_3357 1343333 - 1346584 + | hypothetical protein CLD_3356 1346662 - 1348176 + | glycosy hydrolase family protein TERM 2040 1348215 - 1348197 - f 75 -8.8 -3.28984 | opp_overlap 1348191 1348212 TAATTTAACTAGTAA CCCAGTAC ATG GTGCTGGG TCCCTCATAATTTTA CLD_3355 1348350 - 1349609 + | putative sensory box-containing diguanylate cyclase TERM 2041 1349665 - 1349712 + F 84 -9.6 -3.70102 | opp_overlap 1349665, overlap 1349662 1349702 TTTAATAAAAATTAG GGATGTATTTTTATAGATAATA GGTA TGTTATTTATATAAATATATCC TATTTAATTTTACAT sdhB 1350010 - 1350684 + | L-serine dehydratase, iron-sulfur-dependent, beta subunit sdhA 1350697 - 1351587 + | L-serine dehydratase, iron-sulfur-dependent, alpha subunit TERM 2042 1351614 - 1351660 + F 71 -6.8 -4.10731 | opp_overlap 1351619, overlap 1351619 ATAATATAAAAAATG AAAAAGCTATGAAATATAGG ATTAATA CCTTAATTTCATAGCTTTTA TTTGCTTATATTATT TERM 2043 1351655 - 1351619 - f 87 -6.7 -5.27769 | opp_overlap 1351619 1351614 ATAAAAAATGAAAAA GCTATGAAATATAGG ATTAATA CCTTAATTTCATAGC TTTTATTTGCTTATA TERM 2044 1351619 - 1351655 + F 80 -6.7 -5.02357 | opp_overlap 1351619, overlap 1351614 ATAAAAAATGAAAAA GCTATGAAATATAGG ATTAATA CCTTAATTTCATAGC TTTTATTTGCTTATA TERM 2045 1351672 - 1351709 + F 81 -10.3 -2.71329 | opp_overlap 1351674, overlap 1351671 1351669 1351674 TTTATTTGCTTATAT TATTTATTTGTATTTAA TTAA TTGAGTACAAATAAATA CTGTTTACTATCTAG CLD_3352 1352011 - 1352220 + | hypothetical protein TERM 2046 1352331 - 1352285 - T 100 -15.6 -4.08689 | opp_overlap 1352285 1352290, overlap 1352290 CACTTAATAATTAAA TAAAAGCTATGAATTAAGAAAA TAA TTTTCTAAATTCATAGCTTTAA ATCTTAATATTAAGC TERM 2047 1352285 - 1352331 + T 100 -15.6 -2.54723 | opp_overlap 1352285 1352290, overlap 1352290 CACTTAATAATTAAA TAAAAGCTATGAATTAAGAAAA TAA TTTTCTAAATTCATAGCTTTAA ATCTTAATATTAAGC TERM 2048 1352326 - 1352290 - T 100 -15.5 -5.03713 | opp_overlap 1352285 1352290, overlap 1352285 AATAATTAAATAAAA GCTATGAATTAAGAAAA TAA TTTTCTAAATTCATAGC TTTAAATCTTAATAT TERM 2049 1352290 - 1352326 + T 100 -15.5 -3.78233 | opp_overlap 1352290 1352285, overlap 1352285 AATAATTAAATAAAA GCTATGAATTAAGAAAA TAA TTTTCTAAATTCATAGC TTTAAATCTTAATAT CLD_3351 1352522 - 1352379 - | hypothetical protein TERM 2050 1352533 - 1352545 + H 70 -6.3 -4.35474 | opp_overlap 1352532 TTCATTAAAAATACC TCCTT AAA AAGGA TTATTATTTTATTTA CLD_3350 1352787 - 1353371 + | hypothetical protein TERM 2051 1353520 - 1353489 - T 80 -9.4 -3.20878 | TAATATTTAAGCTAA CGCTCTAATGCCAC GTCT GTGGCAACAGAGCT AAGTAAACGTCCTGT CLD_3349 1354504 - 1353689 - | alpha/beta fold family hydrolase TERM 2052 1354068 - 1354084 + g 74 -6.7 -4.25104 | opp_overlap 1354068 TCTGATGTTAATTTA GATAATA ACT TATTATC TTTTACTAAAACAAC CLD_3348 1355785 - 1354817 - | dipeptidase family protein TERM 2053 1356138 - 1356108 - R 95 -11.4 -3.51419 | opp_overlap 1356107 1356114 1356136, overlap 1356114 TTATTAAATATAACA TAAAAAGCGTGA TGAGTTT TCACGCTTTTTA ATATATACAATATTA TERM 2054 1356132 - 1356114 - R 80 -6 -5.18995 | opp_overlap 1356114 1356107, overlap 1356108 AATATAACATAAAAA GCGTGA TGAGTTT TCACGC TTTTTAATATATACA TERM 2055 1356114 - 1356132 + r 76 -6 -4.84527 | opp_overlap 1356108 1356114, overlap 1356107 AATATAACATAAAAA GCGTGA TGAGTTT TCACGC TTTTTAATATATACA CLD_3347 1356847 - 1356155 - | hypothetical protein TERM 2056 1356782 - 1356799 + g 70 -5.7 -4.20354 | opp_overlap 1356782, overlap 1356788 TGAAGGGGATGTAAA GAAAAAT TTAA ATTTTTC TTTTAAAGTTAAGTT CLD_3346 1358231 - 1356948 - | putative ABC transporter, permease protein TERM 2057 1357031 - 1357020 - G 72 -4.4 -5.06585 | TAAACCAGATAAAAA TCCT ACAC AGGA TGAAAAGAACAATAC CLD_3345 1359048 - 1358233 - | hypothetical protein CLD_3344 1359759 - 1359085 - | putative oligopeptide ABC transporter, ATP-binding protein TERM 2058 1359772 - 1359821 + r 75 -7.6 -3.88583 | gap 1, opp_overlap 1359779 1359783 1359794 1359796 1359798, overlap 1359773 1359779 CAATAGCACACCTCC TTTA-ACACTAATACTGTATATA TACAC TATACACAGTATTAGTGTATAAC TTTGTGAACAGTTTG TERM 2059 1359773 - 1359820 + r 85 -11.1 -2.92668 | gap 1, opp_overlap 1359779 1359783 1359794 1359796 1359798, overlap 1359772 1359779 AATAGCACACCTCCT TTA-ACACTAATACTGTATATA TACAC TATACACAGTATTAGTGTATAA CTTTGTGAACAGTTT TERM 2060 1359779 - 1359813 + r 85 -10.3 -2.99546 | opp_overlap 1359779 1359783 1359794 1359796 1359798, overlap 1359773 1359772 ACACCTCCTTTAACA CTAATACTGTATATA TACAC TATACACAGTATTAG TGTATAACTTTGTGA TERM 2061 1359813 - 1359779 - R 90 -12.5 -3.02263 | opp_overlap 1359779 1359773 1359772, overlap 1359783 1359794 1359796 1359798 ACACCTCCTTTAACA CTAATACTGTATATA TACAC TATACACAGTATTAG TGTATAACTTTGTGA TERM 2062 1359809 - 1359783 - R 70 -7.5 -3.36273 | opp_overlap 1359779 1359773 1359772, overlap 1359779 1359794 1359796 1359798 CTCCTTTAACACTAA TACTGTATATA TACAC TATACACAGTA TTAGTGTATAACTTT TERM 2063 1359906 - 1359860 - R 100 -13.5 -3.28497 | opp_overlap 1359865 1359868, overlap 1359865 TTACTTTAAATTTAA CAAAAGAATCATTATATAGTA TTTTG TTCTATATAATGATTCTTTTA AGATTGTCATTTATT TERM 2064 1359865 - 1359901 + r 100 -11.9 -4.22338 | opp_overlap 1359860 1359865, overlap 1359868 TTAAATTTAACAAAA GAATCATTATATAGTAT TTT GTTCTATATAATGATTC TTTTAAGATTGTCAT TERM 2065 1359901 - 1359865 - R 100 -11.2 -4.75309 | opp_overlap 1359865 1359868, overlap 1359860 TTAAATTTAACAAAA GAATCATTATATAGTA TTTTG TTCTATATAATGATTC TTTTAAGATTGTCAT TERM 2066 1359868 - 1359898 + r 78 -7.8 -4.22535 | opp_overlap 1359865 1359860, overlap 1359865 AATTTAACAAAAGAA TCATTATATAGTAT TTT GTTCTATATAATGA TTCTTTTAAGATTGT CLD_3343 1360761 - 1359913 - | putative oligopeptide ABC transporter, permease protein CLD_3342 1361720 - 1360767 - | putative oligopeptide ABC transporter, permease protein TERM 2067 1361309 - 1361290 - GH 70 -3.6 -5.02715 | opp_overlap 1361293, overlap 1361291 ATAGCAAACCAAAAA CTAGGTAT AGAT ATACCTAT ATAAGAGATTACTGA CLD_3341 1361665 - 1361757 + | hypothetical protein TERM 2068 1361898 - 1361868 - TR 72 -4.7 -4.91473 | opp_overlap 1361868 TAATTTAAAAATAAA CGGTATCAAAAGG GGAAT CCAATTAATACCG TCTTTTTAACTATTA TERM 2069 1361903 - 1361915 + Tr 77 -3.5 -5.71295 | AATTAATACCGTCTT TTTAA CTA TTAAA TTTTTATTTTTCTAT CLD_3340 1363517 - 1361919 - | putative oligopeptide ABC transporter, oligopeptide-binding protein TERM 2070 1362512 - 1362544 + g 77 -8.5 -3.72695 | opp_overlap 1362520, overlap 1362520 AGGCATTCTTAGGTA GTGGAGAATAGGCCT TAG GGGCATATTTTTCAC TTTCATAAGCAGCCT TERM 2071 1363750 - 1363766 + H 100 -8.1 -5.55769 | GTTATTAAAGCCCAG GGATTTA ACT TAAATCC TTTTTTATTGTGCAA CLD_3339 1363808 - 1363969 + | hypothetical protein TERM 2072 1364192 - 1364167 - g 72 -7.7 -3.55857 | opp_overlap 1364167 1364166, overlap 1364165 ATTAAAAGAAACATA TGAAGAAAGGT TTGG ACCTTTATTCA ATTTTGGTTTCAGTA cotJB 1364003 - 1364275 + | spore coat peptide assembly protein CotJB cotJC 1364306 - 1364878 + | spore coat peptide assembly protein CotJC TERM 2073 1364973 - 1365008 + F 74 -4.9 -5.24799 | opp_overlap 1364970 1364973 ATAATTATAAAATAA CAATCCAAATTAAAT GATATA ATTTTCTTTGGATTG TTTTTATATTTGTAA TERM 2074 1365012 - 1365043 + F 85 -10.5 -3.00774 | opp_overlap 1365028 1365039, overlap 1365039 TTCTTTGGATTGTTT TTATATTTGTAAC TCATTT GTTACAAATATAA TGTATAATTACAATA CLD_3336 1365108 - 1366127 + | hypothetical protein TERM 2075 1366305 - 1366286 - g 80 -2.2 -5.70829 | overlap 1366290 AAGAGGATAAAAAAA TAAAGAAA ACTG TTTCTATA GATGTGCCAGATTAT TERM 2076 1366301 - 1366290 - g 71 -3 -5.27709 | overlap 1366286 GGATAAAAAAATAAA GAAA ACTG TTTC TATAGATGTGCCAGA TERM 2077 1366562 - 1366551 - g 78 -3 -5.50499 | overlap 1366558 TGATAGTGAAAAAAA TGAA AAAT TTCA GCTGGAAGATGAAAA TERM 2078 1366576 - 1366558 - g 77 -4.6 -5.31158 | overlap 1366551 GAAAAAAATGAAAAA TTTCAGCT GGA AGATGAAA ATGGGAAAAAAACTA CLD_3335 1366144 - 1367208 + | hypothetical protein TERM 2079 1367266 - 1367297 + F 72 -8 -3.62522 | overlap 1367267 TAAACAGAGTTCTTG ACTTTAGAGGGAGT GTTT ACTCCCCCTGAAGC TTATTAACAGAATTC TERM 2080 1367267 - 1367296 + F 88 -11.5 -2.77192 | overlap 1367266 AAACAGAGTTCTTGA CTTTAGAGGGAGT GTTT ACTCCCCCTGAAG CTTATTAACAGAATT TERM 2081 1367302 - 1367341 + F 74 -8.8 -2.96873 | gap 1, opp_overlap 1367310, overlap 1367306 1367307 CCCCCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGTAGAAAT TERM 2082 1367307 - 1367337 + F 80 -9.8 -2.77227 | opp_overlap 1367310, overlap 1367306 1367302 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGTAG TERM 2083 1367334 - 1367310 - f 90 -10.1 -3.71552 | opp_overlap 1367307 1367306 1367302 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 2084 1367937 - 1367927 - g 85 -2.6 -5.86609 | TTAAAAAAATAAAAA TATA CGA TATA GATGATAGGGAATTA CLD_3334 1367803 - 1368294 + | hypothetical protein CLD_3333 1368929 - 1368537 - | hypothetical protein dut 1369276 - 1369902 + | deoxyuridine 5'-triphosphate nucleotidohydrolase TERM 2085 1369948 - 1369905 - T 100 -13.4 -3.73084 | opp_overlap 1369898 1369905 1369909 1369914, overlap 1369909 1369914 AGGAGTAAAATAATA TTAATAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCATTGA ATTATATATTATTTT TERM 2086 1369905 - 1369948 + T 100 -15.6 -2.87888 | opp_overlap 1369905 1369909 1369914, overlap 1369898 1369909 1369914 AGGAGTAAAATAATA TTAATAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCATTGA ATTATATATTATTTT TERM 2087 1369944 - 1369909 - T 100 -14.2 -3.53836 | opp_overlap 1369905 1369898 1369909 1369914, overlap 1369905 1369914 GTAAAATAATATTAA TAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCA TTGAATTATATATTA TERM 2088 1369909 - 1369944 + T 100 -14.2 -3.28979 | opp_overlap 1369909 1369905 1369914, overlap 1369905 1369898 1369914 GTAAAATAATATTAA TAAAAGGTGCTGAAGG TTAA CTTTCAGCACCTTTCA TTGAATTATATATTA TERM 2089 1369914 - 1369939 + T 100 -14.1 -3.97057 | opp_overlap 1369909 1369905 1369914, overlap 1369909 1369905 1369898 ATAATATTAATAAAA GGTGCTGAAGG TTAA CTTTCAGCACC TTTCATTGAATTATA TERM 2090 1369939 - 1369914 - T 100 -11.9 -4.79657 | opp_overlap 1369914 1369909 1369905 1369898, overlap 1369909 1369905 ATAATATTAATAAAA GGTGCTGAAGG TTAA CTTTCAGCACC TTTCATTGAATTATA CLD_3331 1370153 - 1369962 - | small acid-soluble spore protein, H-type TERM 2091 1370085 - 1370111 + g 76 -5.3 -5.08169 | overlap 1370087 TTCTATATGAACTGG TGTATTCTTGT AATAA ACAGGAATATA TTTTTTAGAGTCTAT TERM 2092 1370561 - 1370599 + r 88 -4.7 -5.96219 | opp_overlap 1370565 1370576, overlap 1370563 TCCTAAGTTTTAAAT TTAACTTCACCTAAATA AATAA TATTTAGGTGAAGGGCA TTTTTTTTATGAATA TERM 2093 1370595 - 1370565 - R 100 -14.3 -3.28269 | opp_overlap 1370563 1370561, overlap 1370576 AAGTTTTAAATTTAA CTTCACCTAAATA AATAA TATTTAGGTGAAG GGCATTTTTTTTATG TERM 2094 1370632 - 1370666 + r 71 -6.7 -4.1523 | gap 1, opp_overlap 1370639, overlap 1370639 AGATAAAAAATTATA TTA-AAAAGCTAGTCT ATTA AGACTAGCTTTAATAA TTATTTCTCATTAGG TERM 2095 1370639 - 1370658 + r 95 -10.8 -3.90738 | opp_overlap 1370639, overlap 1370632 AAATTATATTAAAAA GCTAGTCT ATTA AGACTAGC TTTAATAATTATTTC TERM 2096 1370658 - 1370639 - R 100 -10.8 -4.85177 | opp_overlap 1370639 1370632 AAATTATATTAAAAA GCTAGTCT ATTA AGACTAGC TTTAATAATTATTTC TERM 2097 1370683 - 1370699 + r 71 -6.6 -4.09378 | overlap 1370681 TATTTCTCATTAGGA GCTTTC ATAAA GAAAGC TATTTTATCTTTTTC CLD_3330 1371407 - 1370667 - | hypothetical protein TERM 2098 1370954 - 1370964 + g 75 -4 -5.24989 | CTAATAATCCCTTAG TACT TAT AGTA TTTTTTGGTATATCA CLD_3329 1371801 - 1371947 + | hypothetical protein TERM 2099 1371964 - 1371923 - T 73 -7.5 -3.70043 | opp_overlap 1371926, overlap 1371915 1371921 1371929 GTTAATATATAAATA TTATAAGCACGAATTAATT AACT AATTAATTCGTGCTTGTTT TCTATTATTGAAAGT TERM 2100 1371926 - 1371961 + T 100 -15.8 -4.79752 | opp_overlap 1371915 1371923 1371921 1371929 AATATATAAATATTA TAAGCACGAATTAATT AACT AATTAATTCGTGCTTG TTTTCTATTATTGAA TERM 2101 1371958 - 1371929 - T 100 -15.3 -3.59627 | opp_overlap 1371926, overlap 1371923 1371921 ATATAAATATTATAA GCACGAATTAATT AACT AATTAATTCGTGC TTGTTTTCTATTATT CLD_3328 1372598 - 1372065 - | DNA-binding protein TERM 2102 1372704 - 1372724 + H 75 -8.5 -3.58305 | opp_overlap 1372704 TGTTATTCAAAAAAA TCATTTTTT AAG AAAAAATGA TTTAAAAAATTCATT TERM 2103 1372724 - 1372704 - H 100 -8.5 -5.47218 | opp_overlap 1372704 TGTTATTCAAAAAAA TCATTTTTT AAG AAAAAATGA TTTAAAAAATTCATT TERM 2104 1372747 - 1372734 - H 70 -3.9 -5.13521 | AAATGATTTAAAAAA TTCAT TTAT ATGAA AATAATAGAAATAAA CLD_3327 1373022 - 1374071 + | putative transcriptional regulator TERM 2105 1374218 - 1374245 + F 80 -6.4 -5.055 | TATGAAAAAGCTTAA GGGATACTGTTT TTGC AAATAGTGTTCC TTTTTTAGCACTTAA TERM 2106 1374278 - 1374301 + F 100 -10.4 -4.52589 | TATATAGAGATACTT TAGACGTTCA TAAA TGAGCGTCTA TTTTGTATGGAAGGC TERM 2107 1374662 - 1374675 + G 72 -5.3 -4.77173 | overlap 1374661 TTCTACTTATTATAT TCTTC TAAG GAAGA TTTATTTTGTGAAAC CLD_3326 1374494 - 1375081 + | TetR family transcriptional regulator CLD_3325 1375094 - 1375300 + | hypothetical protein TERM 2108 1375845 - 1375861 + G 71 -6.6 -3.94634 | overlap 1375842 GCAAATTAATCGTGA GAATGG AACGA CCATTC TTATTTCCAGTCATA CLD_3324 1375297 - 1376028 + | ABC transporter, ATP-binding protein TERM 2109 1376562 - 1376548 - g 71 -7.2 -3.85542 | opp_overlap 1376548 TGATAAGAAAATCAA CAATTG CTA CAATTG TTTCTTCTCTGATAA TERM 2110 1376548 - 1376562 + G 79 -7.2 -4.41114 | opp_overlap 1376548 TGATAAGAAAATCAA CAATTG CTA CAATTG TTTCTTCTCTGATAA CLD_3323 1376025 - 1376717 + | hypothetical protein TERM 2111 1376895 - 1376916 + G 70 -8.9 -2.62463 | overlap 1376894 1376897 AGCCGTATGGATATG TATCACTAT TGGG ATAGTGATA ATTGTAAATCATGGA CLD_3322 1376737 - 1376958 + | hypothetical protein TERM 2112 1377061 - 1377051 - g 71 -6.8 -3.95986 | CCTAACCCAAGTAAA CGCA TTT TGCG AGCCAGTGCAGTTGT CLD_3321 1376970 - 1377203 + | hypothetical protein TERM 2113 1377551 - 1377510 - T 100 -13.9 -4.91109 | opp_overlap 1377510, overlap 1377538 TTTCCACCACAAAAA GGCACCATACTTAATCTCC TTAT GAAGATTAAAGATGGCGCC TTTAAGAAATTAGGT TERM 2114 1377609 - 1377627 + T 87 -3.9 -6.20267 | CTATTAAAGTTTATT CATATGT TTATT ACATGTG TTTTTTTATTTTTGC CLD_3320 1379146 - 1377710 - | sodium:alanine symporter family protein TERM 2115 1378933 - 1378955 + g 72 -4.2 -5.13344 | opp_overlap 1378938, overlap 1378932 1378930 TTATACAGAAGGCTT GAAAAGAAGA AAC TCCTTTTTTC TTTTTATGTTCCTCT TERM 2116 1379353 - 1379332 - H 70 -6.1 -4.23434 | opp_overlap 1379332 1379333 TAAAATAGTGGAAAA TTTTTTATA AAAT TATAAAAAA TATATATAATATAAA TERM 2117 1379366 - 1379354 - H 73 -3.5 -5.4588 | opp_overlap 1379363, overlap 1379363 TAAAATTATAAAAAA TATAT ATA ATATA AAATATATTCTTACA TERM 2118 1379484 - 1379450 - H 90 -10.4 -3.39505 | opp_overlap 1379441 1379439 1379450 1379461, overlap 1379474 ATTTTATATTTATAA TATGTTTATATTTAAT GAT ATTAATTATAAACATA TTATAAAAGAGTAAA TERM 2119 1379450 - 1379484 + H 87 -10.4 -3.29511 | opp_overlap 1379450 1379474, overlap 1379441 1379439 1379461 ATTTTATATTTATAA TATGTTTATATTTAAT GAT ATTAATTATAAACATA TTATAAAAGAGTAAA TERM 2120 1379529 - 1379504 - H 100 -9.9 -5.69023 | overlap 1379496 AAAAGAGTAAAAAAA TCCCATATTTT TATA AAAACATGGGA AATAAATACAATTGT TERM 2121 1379770 - 1379760 - H 73 -2.6 -5.64274 | opp_overlap 1379760 TGATTTATAAAAAAA TATA ATA TATA CTAGTTTTGTTGGTA TERM 2122 1379952 - 1379929 - H 100 -11.2 -5.00138 | opp_overlap 1379929, overlap 1379933 TATTTAAAGTAAAAA GAAACACAAT CGTA ATTGTGTTTC TTTTTACTTTTTTAT TERM 2123 1379929 - 1379952 + H 100 -11.2 -5.27769 | opp_overlap 1379929 1379933 TATTTAAAGTAAAAA GAAACACAAT CGTA ATTGTGTTTC TTTTTACTTTTTTAT TERM 2124 1379948 - 1379933 - H 78 -6.2 -5.00388 | opp_overlap 1379929, overlap 1379929 TAAAGTAAAAAGAAA CACAAT CGTA ATTGTG TTTCTTTTTACTTTT CLD_3319 1380316 - 1380624 + | hypothetical protein TERM 2125 1380764 - 1380795 + F 100 -10.5 -5.85737 | opp_overlap 1380763 1380766 CATAATATAGTTAAG CATTTCATAAAAA CGAATA TTTTTATGAAATG TTTTTTTATTGATAT TERM 2126 1381128 - 1381104 - f 87 -7.2 -5.21709 | opp_overlap 1381104 CTCCATATGAAAAAA GAACTCCATT TTATT ACTGGAGTTC TTTTTGTATGGAATT TERM 2127 1381104 - 1381128 + F 83 -7.2 -4.98522 | opp_overlap 1381104 CTCCATATGAAAAAA GAACTCCATT TTATT ACTGGAGTTC TTTTTGTATGGAATT CLD_3318 1381287 - 1381490 + | putative DNA-binding protein TERM 2128 1381466 - 1381495 + F 85 -6 -5.49579 | opp_overlap 1381466 AAATATAAAAATGGA GAATATTATTTA CTTAGA TGAATAATATTC TTTTATTTTTTATAG TERM 2129 1381796 - 1381771 - f 80 -3.4 -5.95539 | gap 1, opp_overlap 1381775, overlap 1381775 TGCGAAATAAAAAAA TAAAGCCTAGC AGAAG GCTAGACT-TA TTCCAAGTTGCTAAA TERM 2130 1381793 - 1381775 - f 87 -6.7 -5.36181 | opp_overlap 1381775, overlap 1381771 AAATAAAAAAATAAA GCCTAGC AGAAG GCTAGAC TTATTCCAAGTTGCT CLD_3317 1382385 - 1382642 + | hypothetical protein TERM 2131 1382727 - 1382745 + F 70 -3.1 -5.41941 | opp_overlap 1382727, overlap 1382721 TTTGGTACACAAAAA CCGTACT AAAAA ACTACGG TTTTTATTTAATTTC TERM 2132 1383614 - 1383601 - g 73 -3.9 -5.18355 | TGGAAAAAGTAAAAA TAACA TAGA TGTTA ATATTGAAGCTGGAG CLD_3316 1382912 - 1383658 + | putative lipoprotein CLD_3315 1383977 - 1384204 + | rubredoxin TERM 2133 1384194 - 1384246 + T 100 -24.2 -3.03771 | opp_overlap 1384194 1384198 1384207, overlap 1384198 1384207 CTATAGATGAAGCTA TAAATTTATAAAATAAGGAAGTTG CGATA CAACTTCCTTATTTTATAAATTTA TATTCAGAACTATAG TERM 2134 1384246 - 1384194 - T 100 -24.9 -2.59686 | opp_overlap 1384194 1384198 1384207, overlap 1384198 1384207 CTATAGATGAAGCTA TAAATTTATAAAATAAGGAAGTTGC GAT ACAACTTCCTTATTTTATAAATTTA TATTCAGAACTATAG TERM 2135 1384198 - 1384242 + T 100 -20.6 -4.19177 | opp_overlap 1384194 1384198 1384207, overlap 1384194 1384207 AGATGAAGCTATAAA TTTATAAAATAAGGAAGTTG CGATA CAACTTCCTTATTTTATAAA TTTATATTCAGAACT TERM 2136 1384242 - 1384198 - T 100 -21.3 -3.99228 | opp_overlap 1384198 1384194 1384207, overlap 1384194 1384207 AGATGAAGCTATAAA TTTATAAAATAAGGAAGTTGC GAT ACAACTTCCTTATTTTATAAA TTTATATTCAGAACT TERM 2137 1384233 - 1384207 - T 100 -13.2 -4.52803 | opp_overlap 1384198 1384194 1384207, overlap 1384198 1384194 TATAAATTTATAAAA TAAGGAAGTTGC GAT ACAACTTCCTTA TTTTATAAATTTATA TERM 2138 1384207 - 1384233 + T 100 -12.5 -4.52803 | opp_overlap 1384207 1384198 1384194, overlap 1384198 1384194 TATAAATTTATAAAA TAAGGAAGTTG CGATA CAACTTCCTTA TTTTATAAATTTATA CLD_3314 1385696 - 1384236 - | putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent CLD_3313 1386677 - 1385736 - | putative thioredoxin reductase TERM 2139 1386695 - 1386709 + H 72 -8.6 -3.21466 | overlap 1386692 AAAATCACCTCTTAT TACCCT TAT AGGGTA TATATTAATTATACT TERM 2140 1386964 - 1386950 - H 70 -4.4 -5.00895 | opp_overlap 1386950 TTTATTATAGAAAAA TTTATT ATC AATAAA TTTAATAAAATTTCA TERM 2141 1387391 - 1387357 - H 86 -9.5 -4.13945 | opp_overlap 1387359, overlap 1387359 ACTCTCAGGTTAAAA TACAGAGATAAAAGC TATGG ACTTTTATCTCTGTT TTTTTGCGTAAGTAA TERM 2142 1387389 - 1387359 - H 95 -12.1 -3.6692 | opp_overlap 1387359, overlap 1387357 TCTCAGGTTAAAATA CAGAGATAAAAGC TATGG ACTTTTATCTCTG TTTTTTTGCGTAAGT TERM 2143 1387359 - 1387389 + H 100 -11.4 -5.47821 | opp_overlap 1387357 1387359 TCTCAGGTTAAAATA CAGAGATAAAAG CTATGGA CTTTTATCTCTG TTTTTTTGCGTAAGT grdX 1387462 - 1387839 + | GrdX protein TERM 2144 1387862 - 1387840 - f 72 -8 -3.5782 | opp_overlap 1387815 1387839 1387840 AATGCATTAAATTAA TTTTATATAA GAT TTATATAAAA ATTGCTAGAATCATT TERM 2145 1388113 - 1388099 - g 70 -5 -4.57755 | AGCCAGGAGATAAAA CTAGAA TTA TTCCAG TAAAAGATGTAATAG grdE 1387930 - 1389216 + | glycine reductase complex component B, alpha and beta subunits TERM 2146 1389498 - 1389508 + G 74 -6.8 -4.25104 | GCGGATTTGTTTATA GCAG GAC CTGC TTTTAATGCCGGAAG grdB 1389249 - 1390550 + | glycine reductase complex component B, gamma subunit, selenocysteine-containing trxB 1390715 - 1391656 + | thioredoxin-disulfide reductase CLD_3307 1391690 - 1392010 + | thioredoxin family protein CLD_3306 1392096 - 1392227 + | glycine/sarcosine/betaine reductase complex component A1 (selenoprotein PA 1) (thioredoxinreductase complex A 1) TERM 2147 1392352 - 1392336 - g 71 -8 -3.40299 | GCAGCAGAGGGAGAA GCAGCA GGTCT TGCTGC GGAGACAGTTACTAA grdA 1392243 - 1392572 + | glycine reductase complex component A, selenocysteine-containing TERM 2148 1392607 - 1392648 + F 85 -10.3 -3.01712 | opp_overlap 1392607 1392611 1392639 TAAAGAATTATAAAA TTAAGGAGGCTGTACTATA GGTT TATAATTCAGCCTCCTAAA TATTAGGGGGGAAAA TERM 2149 1392648 - 1392607 - f 100 -12.5 -4.64157 | opp_overlap 1392607, overlap 1392611 1392639 TAAAGAATTATAAAA TTAAGGAGGCTGTACTATA GGTT TATAATTCAGCCTCCTAAA TATTAGGGGGGAAAA TERM 2150 1392644 - 1392611 - f 100 -13.3 -3.78909 | opp_overlap 1392607, overlap 1392607 1392639 GAATTATAAAATTAA GGAGGCTGTACTATA GGTT TATAATTCAGCCTCC TAAATATTAGGGGGG TERM 2151 1393471 - 1393481 + G 71 -6.8 -3.93288 | opp_overlap 1393471 AGCCATTCTCTAATA GCTG CTT CAGC TTTAGTTCAATCCGG grdC 1392667 - 1394205 + | glycine reductase complex component C, beta subunit grdD 1394221 - 1395387 + | glycine reductase complex component C, alpha subunit CLD_3302 1395814 - 1396425 + | DNA-3-methyladenine glycosylase TERM 2152 1396637 - 1396610 - g 82 -8 -4.42639 | opp_overlap 1396610 1396614 1396615, overlap 1396596 1396615 ATATTTTAATGAAAA TAAAACTTTATT TTGT AATAAAGCTTTA TATGTGCTTATTAAT TERM 2153 1396632 - 1396615 - g 81 -5.7 -5.18643 | opp_overlap 1396614 1396610 1396615, overlap 1396610 TTAATGAAAATAAAA CTTTATT TTGT AATAAAG CTTTATATGTGCTTA TERM 2154 1397229 - 1397211 - g 72 -4 -5.08088 | AATTTGCAAGAAAAA TATAAACA AAA TATTTATA CTATTAGAAAAAAAG TERM 2155 1397949 - 1397936 - g 81 -2.5 -5.76949 | TATTTTGAAAAAAAA TAAAA AATG TTTTA ATGAAATAAAAATTA CLD_3301 1396491 - 1398716 + | restriction endonuclease family protein TERM 2156 1398830 - 1398785 - f 87 -6.5 -5.4387 | opp_overlap 1398787, overlap 1398786 1398787 ATATAAATGAAAAAA CGTTAATTTTGAACAAAGTAA TATG TTATTTTGTTCAAAATTAATT TTTTGTCTAATAATA TERM 2157 1398829 - 1398786 - f 93 -10 -3.83882 | opp_overlap 1398787, overlap 1398785 1398787 TATAAATGAAAAAAC GTTAATTTTGAACAAAGTAA TATG TTATTTTGTTCAAAATTAAT TTTTTGTCTAATAAT TERM 2158 1398787 - 1398828 + F 100 -15.7 -5.39721 | opp_overlap 1398786 1398785 1398787 ATAAATGAAAAAACG TTAATTTTGAACAAAGTAA TATG TTATTTTGTTCAAAATTAA TTTTTTGTCTAATAA TERM 2159 1398828 - 1398787 - f 93 -13.5 -2.88702 | opp_overlap 1398787, overlap 1398786 1398785 ATAAATGAAAAAACG TTAATTTTGAACAAAGTAA TATG TTATTTTGTTCAAAATTAA TTTTTTGTCTAATAA mtnK 1399153 - 1400364 + | 5-methylthioribose kinase mtnA 1400504 - 1401553 + | S-methyl-5-thioribose-1-phosphate isomerase TERM 2160 1401674 - 1401648 - f 75 -6.6 -4.54205 | opp_overlap 1401651, overlap 1401651 ATTACATGAAATAAA TAATTGGGGGAT TTT ATCCCCAAATTT ATTAATCACTTAGTA TERM 2161 1401651 - 1401671 + F 80 -8.3 -4.26871 | opp_overlap 1401648 1401651 ACATGAAATAAATAA TTGGGGGAT TTT ATCCCCAAA TTTATTAATCACTTA TERM 2162 1401671 - 1401651 - f 80 -8.3 -4.36862 | opp_overlap 1401651, overlap 1401648 ACATGAAATAAATAA TTGGGGGAT TTT ATCCCCAAA TTTATTAATCACTTA CLD_3298 1401704 - 1402351 + | aldolase TERM 2163 1402514 - 1402504 - f 70 -2.6 -5.56263 | ATTATAAAATAAAAA TATT AGG AATA GGTGGGAAATATGAA CLD_3297 1402525 - 1403319 + | DeoR family transcriptional regulator TERM 2164 1403468 - 1403526 + F 100 -14.4 -2.84053 | opp_overlap 1403469 1403477, overlap 1403477 GATTAATTATCTAAA AGTAAGAAAGAATAATACTAAATTTTAA ATT TTTAGACTTAGTATTATTCTTTCTTACA ATTTAAATCCTTTAA TERM 2165 1403525 - 1403469 - f 100 -17.9 -4.24294 | opp_overlap 1403468 1403477, overlap 1403477 ATTAATTATCTAAAA GTAAGAAAGAATAATACTAAATTTTAA ATT TTTAGACTTAGTATTATTCTTTCTTAC AATTTAAATCCTTTA TERM 2166 1403517 - 1403477 - f 81 -7.9 -4.45765 | opp_overlap 1403477 1403468, overlap 1403469 TCTAAAAGTAAGAAA GAATAATACTAAATTTTAA ATT TTTAGACTTAGTATTATTC TTTCTTACAATTTAA TERM 2167 1403477 - 1403517 + F 78 -7.9 -4.23104 | opp_overlap 1403469 1403477, overlap 1403468 TCTAAAAGTAAGAAA GAATAATACTAAATTTTAA ATT TTTAGACTTAGTATTATTC TTTCTTACAATTTAA CLD_3296 1403626 - 1403985 + | hypothetical protein TERM 2168 1404078 - 1404068 - T 73 -5.4 -4.74611 | opp_overlap 1404069, overlap 1404069 TAGTATAAAAAAGAA GCTT CTT AAGC CAATTTATTTCGCTA TERM 2169 1404159 - 1404197 + T 100 -11.8 -4.70659 | overlap 1404160 TTATTTTGCGGATCC ATGACCAGTCACCTAATG TTT TGTGAGGTGACTGGTCAA TTTTTAAATATGCCA TERM 2170 1404160 - 1404196 + T 100 -15.3 -3.41913 | overlap 1404159 TATTTTGCGGATCCA TGACCAGTCACCTAATG TTT TGTGAGGTGACTGGTCA ATTTTTAAATATGCC CLD_3295 1405214 - 1404339 - | cation efflux family protein TERM 2171 1404404 - 1404414 + g 76 -6.8 -4.52047 | TGCTTGCTTCTATTT GGTC ATG GACC TTTTCTGCTATGCTA CLD_3294 1405462 - 1406190 + | hypothetical protein CLD_3293 1406353 - 1406718 + | hypothetical protein TERM 2172 1407032 - 1407047 + G 79 -5.4 -5.28983 | TAGCTACAGCTTTAG GGGGAA CATT TTCCTC TTTTTCTATTTTGGA CLD_3292 1406860 - 1407198 + | hypothetical protein CLD_3291 1407195 - 1407668 + | hypothetical protein CLD_3290 1407768 - 1407902 + | hypothetical protein CLD_3289 1408362 - 1408748 + | hypothetical protein CLD_3288 1408796 - 1409503 + | hypothetical protein CLD_3287 1409744 - 1409574 - | hypothetical protein TERM 2173 1409912 - 1409892 - R 79 -7.1 -4.72272 | opp_overlap 1409904 1409907, overlap 1409903 1409904 TTTTGTTATGAAAAA TTATTATAA TAG TTATAATAA CTGTAAGAGTTGTTA TERM 2174 1409997 - 1409960 - R 78 -6.7 -4.82518 | AAAAGAGTAATAAAA TTTTAATATATTAAAAA ATAA TTATTAATATACTAAAA TAAAGACCTATTAAA TERM 2175 1410057 - 1410020 - R 75 -5.8 -5.01811 | opp_overlap 1410020 1410015 CTATTAAATTAAAAA GCTATGAATTTAGA TCATTATATT CCTAAATCCATAGC TTTTACTTATTTAAT CLD_3286 1410355 - 1410125 - | hypothetical protein TERM 2176 1410203 - 1410215 + g 70 -5.5 -4.33755 | AGCAGCTGTTGATGT TGCCT GAG GGGCA TTTGTTGATGTTGCT TERM 2177 1411028 - 1411058 + H 100 -11.4 -5.27477 | opp_overlap 1411028 ATCTATAATATTAAA GGTTAAGAGATTTA TAA TAAGTCTTTTAACC TTTTTTAGTTGCAAT TERM 2178 1411058 - 1411028 - H 71 -7 -3.9749 | opp_overlap 1411028 ATCTATAATATTAAA GGTTAAGAGATTTA TAA TAAGTCTTTTAACC TTTTTTAGTTGCAAT CLD_3285 1411674 - 1411970 + | hypothetical protein CLD_3284 1411998 - 1412294 + | hypothetical protein CLD_3283 1412351 - 1414648 + | xanthine dehydrogenase family protein, molybdopterin-binding subunit CLD_3282 1414662 - 1415546 + | xanthine dehydrogenase family protein, FAD-binding subunit CLD_3281 1415578 - 1416051 + | xanthine dehydrogenase family protein, iron-sulfur binding subunit CLD_3280 1416167 - 1416640 + | guanine deaminase TERM 2179 1416816 - 1416849 + F 93 -7.5 -5.19998 | opp_overlap 1416816 TTTTTATAAAATAAA TCCAGTAGCAAGCAT TAAG AAGCTTTCTATTGGA TTTTGTTTTAGTTCT TERM 2180 1416849 - 1416816 - f 73 -5.3 -4.77173 | opp_overlap 1416816 TTTTTATAAAATAAA TCCAGTAGCAAGCAT TAAG AAGCTTTCTATTGGA TTTTGTTTTAGTTCT TERM 2181 1417109 - 1417135 + F 72 -3.9 -5.4505 | gap 1 TTATATATATGTATG TAAGGGTAG-TA AGTA TATCTATCCTTA TTTTTTATTAAAAAA TERM 2182 1417222 - 1417212 - g 74 -5.4 -4.91109 | GTTTTAGCAGAAAAA CCTA GTG TAGG AAGAGATTTAGCTAA TERM 2183 1418311 - 1418301 - g 79 -5.4 -5.24796 | overlap 1418307 CCTACAGAAGAAAAA CCTA AAT TAGG TAACCTAAGTGGTGA TERM 2184 1418319 - 1418307 - g 70 -6.3 -4.05495 | overlap 1418301 GAAGAAAAACCTAAA TTAGG TAA CCTAA GTGGTGAGGAAAGAA TERM 2185 1418972 - 1418954 - g 71 -9 -2.75596 | overlap 1418951 TAAAATGAGAGACTA TTCTACAA AAC TTGTAGAA GATGTAAAAAATAGC TERM 2186 1419042 - 1419027 - g 72 -4 -5.055 | gap 1 TTAACTGGTAAAAAA TGTCCAC AAT GTGG-CA AATATATGTTAGAAG topB 1417182 - 1419377 + | DNA topoisomerase III TERM 2187 1419602 - 1419635 + F 100 -11.3 -5.60689 | gap 1, opp_overlap 1419602 1419599 1419604 TGTCTTGAATAATGA GACT-CATGTATAGTT TTT AACTATGCATGGAGTC TTTTTTATTGTATAA TERM 2188 1419635 - 1419602 - f 73 -9.1 -2.93073 | gap 1, opp_overlap 1419602, overlap 1419599 1419604 TGTCTTGAATAATGA GACT-CATGTATAGTT TTT AACTATGCATGGAGTC TTTTTTATTGTATAA TERM 2189 1419837 - 1419798 - f 74 -8.8 -2.96873 | gap 1, opp_overlap 1419805 1419834, overlap 1419801 1419802 ATTTCTACTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGGA TERM 2190 1419832 - 1419802 - f 80 -9.8 -2.77227 | opp_overlap 1419805, overlap 1419801 1419798 CTACTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 2191 1419805 - 1419829 + F 90 -10.1 -3.71552 | opp_overlap 1419802 1419801 1419798 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 2192 1419873 - 1419842 - f 100 -18.2 -3.62522 | opp_overlap 1419834, overlap 1419861 GAATTCTGTTAATAA GCTTCAGAGGAAGT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA CLD_3278 1419921 - 1420526 + | hypothetical protein TERM 2193 1420549 - 1420539 - f 70 -2.6 -5.59655 | TAAATCAACAAAAAA TAAT ATG ATTA AATAATTCTTAGTTA CLD_3277 1420591 - 1420827 + | hypothetical protein CLD_3276 1421035 - 1420904 - | hypothetical protein TERM 2194 1421810 - 1421789 - g 72 -4.5 -4.89393 | TAAATTGCATAAAAA CATAGTTAT AAAA ATACCTATG TGCGAAGAAGGACTA CLD_3275 1421553 - 1422206 + | transaldolase TERM 2195 1422334 - 1422371 + F 74 -8.2 -3.43492 | opp_overlap 1422333 1422334 1422337, overlap 1422333 1422337 GTAATTTAACACAAT TAATTTTTAATAATAT GTAAAA ATATTATTAAAGATTA TTATAATAGATGTAG CLD_3274 1422605 - 1424269 + | RNA-metabolising metallo-beta-lactamase TERM 2196 1424323 - 1424291 - f 100 -10.8 -5.54403 | opp_overlap 1424291 AAAAAATAACAAAAA GCTAGAACTTTAAT GTTAA ATTATAGTTCTAGC TTTTTGTTATATATT TERM 2197 1424291 - 1424323 + F 100 -10.8 -5.28561 | opp_overlap 1424291 AAAAAATAACAAAAA GCTAGAACTTTAAT GTTAA ATTATAGTTCTAGC TTTTTGTTATATATT TERM 2198 1424501 - 1424482 - f 72 -3.7 -5.40474 | ATGTTTTTAAAAAAA TATGTTA AAGATG TAACATA TTGGCAGGAATTAAT CLD_3273 1424574 - 1425926 + | sodium:alanine symporter family protein TERM 2199 1426028 - 1426076 + F 72 -4.8 -4.99035 | gap 1, overlap 1426032 ATATATAATAAGCAT G-GAGGGATGTGTTGCTAACATA AGAT TATGTTAATGGCACATCCTTTAC TTTTTATATAGATAA TERM 2200 1426032 - 1426071 + F 100 -10.2 -4.40526 | overlap 1426028 ATAATAAGCATGGAG GGATGTGTTGCTAACATA AGAT TATGTTAATGGCACATCC TTTACTTTTTATATA CLD_3272 1426349 - 1427092 + | GGDEF domain-containing protein TERM 2201 1428025 - 1428015 - g 70 -5.4 -4.58585 | CACCCAAATAATAAA GAAG AAG CTTC AGGGGAGGAACATGA TERM 2202 1428407 - 1428419 + G 71 -2 -5.39221 | TATGGTAAGGGGATA TACT GCCGG AGTA TTTTTTCATTCTTAT CLD_3271 1427085 - 1428737 + | STE-like transcription factor domain-containing protein CLD_3270 1428743 - 1430005 + | glycosyl transferase, group 2 family protein TERM 2203 1430393 - 1430379 - g 71 -5.8 -4.41348 | GCGGCTCCAAATAAA TCTAAA AAT TTTAGA GTAGAAAAAGATATG TERM 2204 1431330 - 1431310 - g 78 -9.9 -3.1875 | GATATGGCAATGTAA GTTTAAAAG GAC CTTTTAAAC AGGAGGCAACCTTTA CLD_3269 1430286 - 1432382 + | cellulose synthase domain-containing protein TERM 2205 1432436 - 1432467 + F 95 -12.4 -3.62522 | TAAACAGAGTTCTTG GTTTTAGAGGGAGT TTTT ACTCCCACTAAAGC TTATTAACAGACTTC TERM 2206 1432472 - 1432511 + F 100 -19 -2.90615 | gap 1, opp_overlap 1432475 1432477, overlap 1432476 1432477 1432479 1432479 CCCACTAAAGCTTAT TAACAGACTTCTAAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 2207 1432508 - 1432475 - f 100 -16.3 -3.20747 | gap 1, opp_overlap 1432472 1432476 1432477 1432479 1432479, overlap 1432477 ACTAAAGCTTATTAA CAGACTTCTAAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGAGA TERM 2208 1432476 - 1432508 + F 100 -16.5 -3.60151 | opp_overlap 1432475 1432477, overlap 1432472 1432477 1432479 1432479 CTAAAGCTTATTAAC AGACTTCTAAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGAGA TERM 2209 1432507 - 1432477 - f 100 -20 -3.16288 | opp_overlap 1432476 1432472 1432477 1432479 1432479, overlap 1432475 TAAAGCTTATTAACA GACTTCTAAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 2210 1432477 - 1432507 + F 100 -20 -2.75769 | opp_overlap 1432477 1432475, overlap 1432476 1432472 1432479 1432479 TAAAGCTTATTAACA GACTTCTAAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 2211 1432479 - 1432505 + F 100 -16.8 -2.92144 | opp_overlap 1432477 1432475, overlap 1432479 1432477 1432476 1432472 AAGCTTATTAACAGA CTTCTAAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG TERM 2212 1433846 - 1433819 - g 85 -11.6 -2.62263 | opp_overlap 1433821 1433824, overlap 1433821 1433824 ATTTTTGCTATAGGA GATAATAGTTTT GATA AAAACTATTATC CTTCAGAAGAAAGTA CLD_3268 1432799 - 1433893 + | hypothetical protein CLD_3267 1434121 - 1434285 + | hypothetical protein TERM 2213 1434326 - 1434303 - f 100 -14 -3.91798 | opp_overlap 1434303 GAATTCGTAATTAAA CCTGTAAGAG GTTA CTCTTACAGG TTTTTTGTGTTTCAG TERM 2214 1434303 - 1434326 + F 100 -14 -5.56264 | opp_overlap 1434303 GAATTCGTAATTAAA CCTGTAAGAG GTTA CTCTTACAGG TTTTTTGTGTTTCAG TERM 2215 1434531 - 1434511 - f 75 -8.5 -3.48105 | overlap 1434504 1434509 TGAATTTATTAAATA TCTATTTAA AAA TTAAATAGA ACTAATTACTTTATT TERM 2216 1435098 - 1435117 + G 73 -5.8 -4.65446 | TGCCTAAAAAGCTAG TGTTATTG AATA CAATAGCA TTTTCTATATCTACT CLD_3266 1434620 - 1435423 + | hypothetical protein TERM 2217 1435486 - 1435523 + F 100 -10.9 -5.74086 | opp_overlap 1435485 1435487, overlap 1435487 ATATAATTTCAAGAT AGTGTATCAAAATAGAT TTAA ATTTATTTTGATACACA TTTTTTATTTAATTT TERM 2218 1435487 - 1435522 + F 100 -14.4 -4.00791 | opp_overlap 1435485 1435487, overlap 1435486 TATAATTTCAAGATA GTGTATCAAAATAGAT TTAA ATTTATTTTGATACAC ATTTTTTATTTAATT TERM 2219 1435522 - 1435487 - f 90 -12.2 -3.11326 | opp_overlap 1435487 1435486, overlap 1435485 TATAATTTCAAGATA GTGTATCAAAATAGAT TTAA ATTTATTTTGATACAC ATTTTTTATTTAATT TERM 2220 1435604 - 1435586 - f 100 -14.6 -3.19081 | opp_overlap 1435588, overlap 1435584 1435582 GATTTAATTAATATA CACCCCCA GGG TGGGGGTG GTTGAACAAGGTGAA TERM 2221 1435588 - 1435602 + F 83 -11.4 -2.71144 | opp_overlap 1435586 1435584 1435582 TTTAATTAATATACA CCCCCA GGG TGGGGG TGGTTGAACAAGGTG CLD_3265 1435699 - 1435965 + | hypothetical protein TERM 2222 1438072 - 1438060 - g 74 -3.4 -5.41746 | AACTGGGTAAAAAAA CTTC AACAA GAAG GAAGAATTGTAGCCA CLD_3264 1436002 - 1438437 + | copper-translocating P-type ATPase copZ 1438560 - 1438775 + | copper chaperone CopZ TERM 2223 1438841 - 1438807 - f 71 -5.8 -4.63527 | opp_overlap 1438807 TTATGAGTTTAAAAA GGGTGTTTCAAAAT TAAATCT ATTTTGAGGCACCC TTTTTACATTTTGTA TERM 2224 1438807 - 1438841 + F 100 -10.2 -4.89729 | opp_overlap 1438807 TTATGAGTTTAAAAA GGGTGTTTCAAAAT TAAATCT ATTTTGAGGCACCC TTTTTACATTTTGTA TERM 2225 1441367 - 1441383 + G 81 -8.1 -4.14627 | TACACCATTAAATTT CTATAGA GTT TCTATAG TTGTTTCTATGACAA CLD_3262 1439208 - 1441589 + | cation-transporting ATPase, P-type TERM 2226 1441645 - 1441683 + F 100 -9.1 -5.04325 | opp_overlap 1441643 1441633 1441647, overlap 1441633 1441647 TAATATGTATTAAGA AAGGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCCTA TTTTTATGCTTTAAG TERM 2227 1441647 - 1441681 + F 100 -11.7 -4.13732 | opp_overlap 1441643 1441633 1441647, overlap 1441633 1441645 ATATGTATTAAGAAA GGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCC TATTTTTATGCTTTA TERM 2228 1441681 - 1441647 - f 75 -7.3 -4.26202 | opp_overlap 1441633 1441647 1441645, overlap 1441643 1441633 ATATGTATTAAGAAA GGTTTTCTCAAAATA TATTT TATTTTGAGAAGGCC TATTTTTATGCTTTA CLD_3261 1441872 - 1443590 + | ABC transporter, ATP-binding protein/permease protein TERM 2229 1443713 - 1443740 + F 83 -3.6 -5.86609 | overlap 1443679 1443716 TTTGTAATTTATCTT GAACAATAAAAT TGGA GTTTTATTGTTA TTTTTATTTTTTTGA TERM 2230 1443716 - 1443737 + F 73 -5.3 -4.8855 | overlap 1443679 1443713 GTAATTTATCTTGAA CAATAAAAT TGGA GTTTTATTG TTATTTTTATTTTTT TERM 2231 1443810 - 1443774 - f 89 -9.2 -4.29953 | gap 1, opp_overlap 1443781 1443782 1443784, overlap 1443771 1443782 AAATTACTAAAACAA TATACAAA-TATGTTAT ATAT ATAACATAATTTGTATA CAATTAACAACTAAA TERM 2232 1443801 - 1443782 - f 73 -6.6 -4.31833 | opp_overlap 1443782 1443781 1443784, overlap 1443774 1443771 AAAACAATATACAAA TATGTTAT ATAT ATAACATA ATTTGTATACAATTA CLD_3260 1443929 - 1444723 + | CAAX amino terminal protease family protein CLD_3259 1444887 - 1445243 + | dinitrogenase iron-molybdenum cofactor family protein TERM 2233 1445247 - 1445277 + F 100 -15 -5.99154 | opp_overlap 1445247 1445252 CATCATCATTAAAAA TAAAAGGGAAGTAC CTA GTACTTTCCTTTTA TTTTTTTATTTAATA TERM 2234 1445277 - 1445247 - f 100 -12.8 -4.78107 | opp_overlap 1445247, overlap 1445252 CATCATCATTAAAAA TAAAAGGGAAGTAC CTA GTACTTTCCTTTTA TTTTTTTATTTAATA TERM 2235 1445272 - 1445252 - f 100 -8.3 -5.3104 | opp_overlap 1445247, overlap 1445247 TCATTAAAAATAAAA GGGAAGTAC CTA GTACTTTCC TTTTATTTTTTTATT CLD_3258 1445514 - 1446038 + | two-component response regulator CLD_3257 1446185 - 1446787 + | ABC transporter, permease protein TERM 2236 1446874 - 1446888 + F 86 -4.4 -5.9003 | opp_overlap 1446865, overlap 1446885 GAGTAATATTTCTTT TAAAAA TAC TTTTTA TTTTTTTATTAATTT TERM 2237 1447848 - 1447832 - g 79 -8.1 -3.89505 | AAAAATCCAGAAGAA GAAATAG TAG CTATTTC TCATGGAGATTCAGA CLD_3256 1447136 - 1448029 + | DegV family protein TERM 2238 1448068 - 1448027 - T 100 -14.9 -3.10297 | gap 1, opp_overlap 1448035 1448038, overlap 1448030 1448035 ATTATAGATATAAAT TAATAAAATAAGGAAAGTGC GAC GCACTTTCCTCATTTT-TTA TCTCTGGCCTTTACC TERM 2239 1448066 - 1448030 - T 100 -14.7 -3.68084 | opp_overlap 1448035 1448038, overlap 1448027 1448035 ATAGATATAAATTAA TAAAATAAGGAAAGTGC GAC GCACTTTCCTCATTTTT TATCTCTGGCCTTTA TERM 2240 1448061 - 1448035 - T 100 -14.6 -4.87052 | opp_overlap 1448035 1448038, overlap 1448030 1448027 TATAAATTAATAAAA TAAGGAAAGTGC GAC GCACTTTCCTCA TTTTTTATCTCTGGC TERM 2241 1448035 - 1448061 + T 100 -12.4 -5.4251 | opp_overlap 1448035 1448030 1448027, overlap 1448038 TATAAATTAATAAAA TAAGGAAAGTGC GAC GCACTTTCCTCA TTTTTTATCTCTGGC TERM 2242 1448038 - 1448058 + T 100 -14.1 -3.48985 | opp_overlap 1448035 1448030 1448027, overlap 1448035 AAATTAATAAAATAA GGAAAGTGC GAC GCACTTTCC TCATTTTTTATCTCT CLD_3255 1448530 - 1448066 - | 5-nitroimidazole antibiotic resistance protein CLD_3254 1448649 - 1448768 + | hypothetical protein CLD_3253 1448781 - 1449089 + | hypothetical protein CLD_3252 1449366 - 1449521 + | hypothetical protein CLD_3251 1449797 - 1449991 + | hypothetical protein TERM 2243 1450004 - 1450021 + F 70 -4.1 -5.26875 | TAATAAGAACTAGAA GGCACTT AATA AGGTGTC TTTTTTAGTTCGCAA TERM 2244 1450202 - 1450221 + F 70 -4.4 -5.06451 | opp_overlap 1450196 TTTGAAAGATTTTAT TAAAAAAC CTTT GTTTTTTG TTTTTTGGAATAATA CLD_3250 1450267 - 1450497 + | hypothetical protein CLD_3249 1450623 - 1450805 + | hypothetical protein CLD_3248 1450820 - 1451170 + | putative lipoprotein CLD_3247 1451149 - 1451424 + | putative lipoprotein TERM 2245 1451466 - 1451444 - f 85 -6.3 -5.48623 | opp_overlap 1451444 AAACATAAATAAAAA CTCTAGAGG GTTAA CCTTTAGAG TTTTTTATTTGACGT TERM 2246 1451444 - 1451466 + F 100 -8.5 -5.64421 | opp_overlap 1451444 AAACATAAATAAAAA CTCTAGAGG GTTAA CCTTTAGAG TTTTTTATTTGACGT CLD_3246 1451878 - 1452093 + | hypothetical protein CLD_3245 1452131 - 1452559 + | HIT family protein TERM 2247 1452663 - 1452704 + T 100 -11.9 -4.98672 | opp_overlap 1452669, overlap 1452669 GTATATTTTAAATTT TAAAAAGACCTATTTAGTT ATTT AACTAAATAGGTCTTTAAA TTTTATATTTTTACA TERM 2248 1452669 - 1452698 + T 100 -15.3 -3.99216 | opp_overlap 1452669, overlap 1452663 TTTAAATTTTAAAAA GACCTATTTAGTT ATTT AACTAAATAGGTC TTTAAATTTTATATT TERM 2249 1452698 - 1452669 - T 100 -15.3 -4.70879 | opp_overlap 1452669 1452663 TTTAAATTTTAAAAA GACCTATTTAGTT ATTT AACTAAATAGGTC TTTAAATTTTATATT CLD_3244 1453089 - 1452715 - | hypothetical protein TERM 2250 1452874 - 1452850 - G 82 -8 -4.38927 | overlap 1452872 GGCTGATATAACAAA TCCTTTTAGT CCTCT ACCAAAAGGA GAGGCATCTACTCCC TERM 2251 1453178 - 1453141 - H 72 -8.9 -2.62735 | opp_overlap 1453137 1453136 1453134, overlap 1453151 1453167 ATATTTTGTACATTA TTTTAAAAAATATTATA AATA TCTAATATTTTTTAAAA TAAAATGTTTAAAAT TERM 2252 1453627 - 1453615 - g 77 -4.9 -5.26119 | opp_overlap 1453615 GTTGTAAAAATAAAA TATCT TTA AGATA TCCTCTAGTAGAGTT CLD_3243 1453413 - 1454171 + | type IV leader peptidase family protein TERM 2253 1454494 - 1454536 + F 88 -6.5 -5.48213 | opp_overlap 1454492 ATTAAATTTAAAATA TACCTTATAGAGTAGGT AATAAAAAA GTCTACTCTATGGGGTA TTTTTATTTTAAATA CLD_3242 1454771 - 1455898 + | hypothetical protein trkA 1456680 - 1458047 + | Trk system potassium uptake protein TrkA trkH 1458044 - 1459489 + | Trk system potassium uptake protein TrkH CLD_3239 1459961 - 1460074 + | hypothetical protein CLD_3238 1460132 - 1462699 + | helicase, UvrD/REP/exonuclease family protein TERM 2254 1462760 - 1462715 - T 100 -12.3 -3.87116 | gap 1, opp_overlap 1462715, overlap 1462709 TAAATATAAGTTAAA GCCACACTAAG-AAAAATATAA TTT TAATATTTTTACTTAATGTGGC TTTCTTATAGAATAA TERM 2255 1462715 - 1462760 + T 95 -10.1 -4.32177 | gap 1, opp_overlap 1462715 1462709 TAAATATAAGTTAAA GCCACACTAAG-AAAAATATAA TTT TAATATTTTTACTTAATGTGGC TTTCTTATAGAATAA TERM 2256 1463125 - 1463102 - T 75 -8.4 -3.63744 | opp_overlap 1463115, overlap 1463115 CTTTTGGTGAAAAGA TATCATATAA ATAT TTATATGATA AAATATTATAACATA TERM 2257 1463648 - 1463637 - T 73 -3 -5.78622 | GCACTTCAAAAAAAA TTTC GATA GAAA ATTAATGCGGTAGCA CLD_3237 1465134 - 1464004 - | hypothetical protein CLD_3236 1465523 - 1465149 - | GntR family transcriptional regulator TERM 2258 1465580 - 1465552 - R 75 -9.1 -3.22886 | opp_overlap 1465541 1465539 1465548 1465552 1465554, overlap 1465550 1465530 1465548 1465527 1465554 1465579 ATGTTATATAATATA TATCTGTTATATA TAT TATATAACAGATG TTTTAAAAATAAAAT TERM 2259 1465552 - 1465580 + r 100 -11.3 -4.11394 | opp_overlap 1465552 1465550 1465530 1465548 1465527 1465554 1465579, overlap 1465541 1465539 1465548 1465554 ATGTTATATAATATA TATCTGTTATATA TAT TATATAACAGATG TTTTAAAAATAAAAT TERM 2260 1465578 - 1465554 - R 93 -11.7 -3.17443 | opp_overlap 1465539 1465548 1465552 1465554, overlap 1465552 1465550 1465530 1465548 1465527 GTTATATAATATATA TCTGTTATATA TAT TATATAACAGA TGTTTTAAAAATAAA TERM 2261 1465554 - 1465578 + r 95 -11.7 -3.65542 | opp_overlap 1465554 1465552 1465550 1465530 1465548 1465527, overlap 1465539 1465548 1465552 GTTATATAATATATA TCTGTTATATA TAT TATATAACAGA TGTTTTAAAAATAAA CLD_3235 1466750 - 1465977 - | putative cell wall hydrolase TERM 2262 1466098 - 1466111 + g 80 -2.3 -5.66989 | TCAGATCCATATAAA GCTTC TTTA GCAGC TTTTTTTGATGTTTC CLD_3234 1467089 - 1467214 + | hypothetical protein rbr 1467538 - 1468125 + | rubrerythrin TERM 2263 1468213 - 1468249 + F 70 -4.5 -5.09259 | opp_overlap 1468213, overlap 1468208 TATTAAATACAAAAA GCTATGAAACAGAGG GATAACA CCTTAATTTCATAGC TTTTATTTTGCGATA TERM 2264 1468249 - 1468213 - f 73 -4.5 -5.22289 | opp_overlap 1468208 1468213 TATTAAATACAAAAA GCTATGAAACAGAGG GATAACA CCTTAATTTCATAGC TTTTATTTTGCGATA CLD_3232 1468420 - 1469880 + | N-acetylmuramoyl-L-alanine amidase TERM 2265 1470145 - 1470177 + T 73 -2.9 -5.64421 | opp_overlap 1470128, overlap 1470147 AAAATTAAAGCTATT TTTATTTTAAAACAG TTC CTATTTTAAAGTATA TTTTTTATTTCAAGT ptsG 1472212 - 1470182 - | PTS system, glucose-specific, IIABC component TERM 2266 1470642 - 1470658 + g 79 -5.2 -5.2166 | opp_overlap 1470633 1470642, overlap 1470634 AATTTATCTTTAGAA GAAACT TTTAC AGTTTC TTTTTTAGGTTCTTC TERM 2267 1472326 - 1472314 - H 78 -6.3 -4.94672 | opp_overlap 1472313 1472319 AAATAAGATTAAAAA GTGTA GAA TACAC CTATGTAATCTTAAA TERM 2268 1472410 - 1472420 + H 82 -2.6 -6.17268 | opp_overlap 1472414, overlap 1472414 TAAATTCATTTATAC TATA TCA TATA TTTTTTTTATTATCA TERM 2269 1472634 - 1472609 - H 83 -7.8 -4.61231 | opp_overlap 1472611 TCATATGTTTAAAAA TACCATTATT GTACAT AATAATGGTA ATTAAAAAAATAAGA CLD_3230 1472668 - 1473315 + | undecaprenyl pyrophosphate synthetase-like protein TERM 2270 1473410 - 1473354 - f 100 -14.1 -3.10879 | opp_overlap 1473355, overlap 1473357 ATCAATTTTAATATA TTAGTATTACAGCGCATAATAGTATAT AAA ATAATCTATTATGTGCTGTAATACTAT TTAAATATTAATTGA TERM 2271 1473355 - 1473409 + F 100 -19.8 -3.78902 | opp_overlap 1473354 1473357 TCAATTTTAATATAT TAGTATTACAGCGCATAATAGTATAT AAA ATAATCTATTATGTGCTGTAATACTA TTTAAATATTAATTG TERM 2272 1473407 - 1473357 - f 100 -15.8 -2.76093 | opp_overlap 1473355, overlap 1473354 AATTTTAATATATTA GTATTACAGCGCATAATAGTATAT AAA ATAATCTATTATGTGCTGTAATAC TATTTAAATATTAAT CLD_3229 1473460 - 1473606 + | hypothetical protein CLD_3228 1473703 - 1474203 + | hypothetical protein CLD_3227 1474498 - 1474911 + | putative transcriptional regulator CLD_3226 1475120 - 1477006 + | carbon monoxide dehydrogenase CLD_3225 1477152 - 1477595 + | nitrate reductase, iron-sulfur subunit noxA 1477794 - 1479020 + | nitrate reductase, NADH oxidase subunit TERM 2273 1479046 - 1479074 + F 100 -13.4 -5.07011 | TAGTGTTTCCATGAG GCTGTTGATAAA CATAT TTTATCAACAGC TTTTTAATTTGTATA CLD_3223 1479190 - 1479861 + | DNA-binding response regulator CLD_3222 1479849 - 1480946 + | putative sensor histidine kinase CLD_3221 1481012 - 1482424 + | ABC transporter, permease protein CLD_3220 1482430 - 1483095 + | ABC transporter, ATP-binding protein TERM 2274 1483179 - 1483138 - T 77 -7.6 -4.16301 | opp_overlap 1483140 1483142, overlap 1483140 CATATTATATAGAAA GAGATATCTCAAAATAAA ATTAAA TCTATTTTGAGATACCTT ATTTTTGTGTTACTA TERM 2275 1483177 - 1483140 - T 90 -10.2 -3.67067 | opp_overlap 1483140 1483142, overlap 1483138 TATTATATAGAAAGA GATATCTCAAAATAAA ATTAAA TCTATTTTGAGATACC TTATTTTTGTGTTAC TERM 2276 1483140 - 1483177 + T 71 -5.8 -4.63863 | opp_overlap 1483140 1483138, overlap 1483142 TATTATATAGAAAGA GATATCTCAAAATAAA ATTAAA TCTATTTTGAGATACC TTATTTTTGTGTTAC CLD_3219 1484199 - 1483225 - | putative transporter CLD_3218 1485374 - 1484688 - | Crp/FNR family transcriptional regulator TERM 2277 1484760 - 1484771 + g 72 -4.4 -5.06414 | TTTTTTATATCCTAA GGAA ATCA TTCC TTTTTCTTGAAAAGA TERM 2278 1485077 - 1485100 + g 74 -9 -3.28119 | gap 1, opp_overlap 1485073 1485072 1485069 CTGAAATTAATTCGA CATCTG-TAGC AGC GCTAACAGATG TTAATCTAGATCCAT CLD_3217 1485491 - 1486690 + | major facilitator superfamily protein TERM 2279 1487564 - 1487550 - g 71 -7.2 -3.794 | opp_overlap 1487549 GGTGAAGTCATTAAA TAAACC TAA GGTTTA CTATATGGTTGATTT TERM 2280 1487600 - 1487587 - g 72 -6.7 -4.09685 | GTTGATTTTGGAAAA GCAGA CTTT TCTGC TGGAGGAGATACTTT CLD_3216 1486993 - 1487907 + | iron chelate ABC transporter solute-binding protein TERM 2281 1488756 - 1488784 + G 72 -6.7 -4.13343 | opp_overlap 1488756 TATAGTAGGAGCTAA CCATAGAGAAGTG ATT CCCTTTTCAATGG TTTTAGGAGCTTTAT CLD_3215 1487929 - 1488927 + | iron chelate ABC transporter permease protein CLD_3214 1488930 - 1489691 + | iron chelate ABC transporter ATP-binding protein TERM 2282 1489741 - 1489713 - T 75 -9.7 -2.70232 | opp_overlap 1489710, overlap 1489710 1489705 TGTAATATTACAGTA TCAGTGACTGT TATAAAG ACAGCCACTGA TAGTAATTAACATTA CLD_3213 1490160 - 1489912 - | hypothetical protein CLD_3212 1490458 - 1490586 + | hypothetical protein CLD_3211 1490593 - 1490733 + | reverse transcriptase/maturase family protein TERM 2283 1490784 - 1490809 + F 100 -14.1 -2.83677 | overlap 1490787 ATTTAGATTCCTCAG TAGCCCCATGC ATTT GCATGGGGTTA TATGGTGCCTTAATT TERM 2284 1490787 - 1490806 + F 100 -13.6 -3.56161 | overlap 1490784 TAGATTCCTCAGTAG CCCCATGC ATTT GCATGGGG TTATATGGTGCCTTA TERM 2285 1490833 - 1490850 + F 78 -8.5 -3.84271 | CTTAATTTATTATGC GATAGCA TCCT TGCTATC TTCTTCATGTTCTGA CLD_3210 1491373 - 1491543 + | hypothetical protein CLD_3209 1491850 - 1491647 - | hypothetical protein TERM 2286 1493383 - 1493367 - g 81 -3.8 -5.54192 | opp_overlap 1493367 ATCAAGTGAAAAAAA TAACAA AGGTA TTGTTA TTGTATCTATAATTA CLD_3208 1492798 - 1493448 + | hypothetical protein TERM 2287 1494114 - 1494129 + G 75 -4.8 -5.12971 | overlap 1494123 ACCGCCTCAGCATAT TGTTTT GGAT AAAACA TTTTTATTGAGTCTT TERM 2288 1494434 - 1494445 + G 74 -3 -5.35459 | ATGGTGAAGCCGTAA CAAT TGAT ATTG TTTTTTCTACTATAT CLD_3207 1493599 - 1494717 + | 2-epi-5-epi-valiolone synthase (Sedo-heptulose 7-phosphate cyclase) CLD_3206 1494793 - 1495947 + | FkbM family methyltransferase TERM 2289 1496194 - 1496182 - g 72 -2.7 -5.44721 | opp_overlap 1496168, overlap 1496168 ATCATTTCAAAAAAA TGAAT TTA ATCCA TTTACTTTTAATGAA CLD_3205 1496069 - 1497319 + | putative endonuclease luxS 1497348 - 1497827 + | S-ribosylhomocysteinase LuxS TERM 2290 1498094 - 1498055 - f 77 -6.6 -4.60317 | opp_overlap 1498057 1498060, overlap 1498060 ATAGAAGAACTAAAA CATAACGGTAAACTATTT TATA AAATGGTTTACCGTTGTT AATATAAAAACATGG TERM 2291 1498057 - 1498092 + F 100 -13.6 -3.25942 | opp_overlap 1498055 1498060, overlap 1498060 AGAAGAACTAAAACA TAACGGTAAACTATTT TATA AAATGGTTTACCGTTG TTAATATAAAAACAT TERM 2292 1498060 - 1498089 + F 100 -13.1 -3.7732 | opp_overlap 1498055 1498060, overlap 1498057 AGAACTAAAACATAA CGGTAAACTATTT TATA AAATGGTTTACCG TTGTTAATATAAAAA TERM 2293 1498089 - 1498060 - f 100 -10.9 -4.03665 | opp_overlap 1498060 1498057, overlap 1498055 AGAACTAAAACATAA CGGTAAACTATTT TATA AAATGGTTTACCG TTGTTAATATAAAAA TERM 2294 1498290 - 1498276 - f 81 -5.8 -5.29782 | GATATTGATAAAAAA TATCTT CAT AAGATA GTAAATATGTGGATA CLD_3203 1498718 - 1499026 + | hypothetical protein CLD_3202 1499101 - 1500102 + | hypothetical protein TERM 2295 1500427 - 1500402 - f 100 -16.3 -3.16971 | opp_overlap 1500402 TTATTATATATTCAA GTCCCCTTAAG GTTA CTTAAGGGGAC TTTTATGTATTGTTT TERM 2296 1500402 - 1500427 + F 100 -16.3 -4.74989 | opp_overlap 1500402 TTATTATATATTCAA GTCCCCTTAAG GTTA CTTAAGGGGAC TTTTATGTATTGTTT ribB 1500620 - 1501258 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 2297 1501504 - 1501543 + F 100 -9.6 -5.04175 | overlap 1501506 AGTTTTTATTCTAGG CATGTAGGTAGATTTGTT TAAA AATAAATTTACCTACATC TTTTTGTGTGATTAG TERM 2298 1501506 - 1501541 + F 100 -12.2 -4.13652 | overlap 1501504 TTTTTATTCTAGGCA TGTAGGTAGATTTGTT TAAA AATAAATTTACCTACA TCTTTTTGTGTGATT CLD_3200 1501584 - 1501706 + | transposase mutator family protein CLD_3199 1501774 - 1501887 + | hypothetical protein CLD_3198 1501903 - 1502052 + | transposase mutator family protein CLD_3197 1502060 - 1502239 + | transposase for insertion sequence element TERM 2299 1502843 - 1502897 + T 73 -9 -2.92475 | opp_overlap 1502859, overlap 1502841 1502855 TATTTGTATGGGCTA TACTAATAAAAATACATAAGAAGC TTAATGT GTATCTTATGTATTTTTATTAGAG ATTTATAAAGGTAGC CLD_3196 1503223 - 1502900 - | hypothetical protein CLD_3195 1504573 - 1503296 - | iron-sulfur cluster-binding protein TERM 2300 1503878 - 1503897 + g 70 -4.4 -4.86001 | gap 1, overlap 1503882 CATATTTAAAATATC TAGA-GCTT CAG AAGCATCTA TTTTTCTAGCATAAT CLD_3194 1504641 - 1504760 + | hypothetical protein TERM 2301 1505595 - 1505585 - g 91 -5.4 -5.86332 | GGAAGCGAAAAAAAA TGGT GCT ACCA CTATAGCTATAACTA CLD_3193 1504980 - 1505825 + | RpiR family transcriptional regulator TERM 2302 1505874 - 1505897 + F 83 -6.1 -5.34857 | AATCTAGATGGTGAA GCAATGAGT ATAAAA ATTCATTGC TTTTATTTTATTTAA TERM 2303 1506890 - 1506880 - g 75 -4 -5.28778 | AGCAGGTAGAAAAAA TTCT TAA AGAA ACAAATTTTGATGTT CLD_3192 1506105 - 1507013 + | glucokinase regulator-like protein TERM 2304 1507857 - 1507841 - g 79 -5.2 -5.25906 | opp_overlap 1507841 AGAAAGTAAGAAAAA TAATGC CAGAT GCATTA GATTTATTTATGACT CLD_3191 1507126 - 1508481 + | PTS system, IIBC components CLD_3190 1508905 - 1509981 + | hypothetical protein TERM 2305 1510057 - 1510024 - f 95 -8.3 -5.10767 | opp_overlap 1510026, overlap 1510026 TAGCTAATACAAAAA CAGCCTCTTAAGA TAAAAAGT TCTTAAGAGGCTT ATATACTATTATCAA TERM 2306 1510026 - 1510055 + F 95 -10.9 -3.6142 | opp_overlap 1510026 1510024 GCTAATACAAAAACA GCCTCTTAAGA TAAAAAGT TCTTAAGAGGC TTATATACTATTATC TERM 2307 1510055 - 1510026 - f 100 -10.9 -4.17211 | opp_overlap 1510026, overlap 1510024 GCTAATACAAAAACA GCCTCTTAAGA TAAAAAGT TCTTAAGAGGC TTATATACTATTATC TERM 2308 1510383 - 1510393 + G 72 -4 -5.06816 | TTAATGGTATAGGAT TAGA ACA TCTA TTTTTATTGAAAGAT CLD_3189 1510313 - 1510921 + | hypothetical protein CLD_3188 1511204 - 1511845 + | hypothetical protein TERM 2309 1511977 - 1512017 + F 73 -7.1 -4.07885 | opp_overlap 1511977 CTCTCAAAATAAGAA TAGCCTTAATTTTTATATT TAC GGTTTTAAAATTAAGGCTA TTTTGAGACACCCTC TERM 2310 1512176 - 1512159 - g 71 -4.9 -4.80882 | gap 1, opp_overlap 1512159 1512157 ATCTTACATGAAAAA GCTAT-CC ACA GGTATAGC TGTATTTTTATGTGC CLD_3187 1512151 - 1514022 + | hypothetical protein CLD_3186 1514075 - 1515313 + | putative cell-surface protein CLD_3185 1515313 - 1515855 + | hypothetical protein TERM 2311 1516007 - 1515954 - T 79 -8.1 -4.10407 | gap 1, opp_overlap 1515959 1515964 1515997, overlap 1515959 1515964 ATATTAATAATTAAA TATAA-TAAAACACTATCAAAT ATTTATATACA ATTTGATAGTGTTTTATTTATA AAAATTTCTTTAATA TERM 2312 1516001 - 1515959 - T 86 -9.6 -3.92809 | opp_overlap 1515959 1515964 1515997, overlap 1515954 1515964 AATAATTAAATATAA TAAAACACTATCAAAT ATTTATATACA ATTTGATAGTGTTTTA TTTATAAAAATTTCT TERM 2313 1515959 - 1516001 + T 86 -9.6 -3.91473 | opp_overlap 1515954 1515959 1515964, overlap 1515964 1515997 AATAATTAAATATAA TAAAACACTATCAAAT ATTTATATACA ATTTGATAGTGTTTTA TTTATAAAAATTTCT TERM 2314 1515996 - 1515964 - T 72 -5.1 -4.95302 | opp_overlap 1515964 1515959, overlap 1515959 1515954 TTAAATATAATAAAA CACTATCAAAT ATTTATATACA ATTTGATAGTG TTTTATTTATAAAAA TERM 2315 1515964 - 1515996 + T 72 -5.1 -4.99043 | opp_overlap 1515959 1515954 1515964, overlap 1515959 TTAAATATAATAAAA CACTATCAAAT ATTTATATACA ATTTGATAGTG TTTTATTTATAAAAA CLD_3184 1516305 - 1516033 - | hypothetical protein CLD_3183 1516802 - 1518520 + | methyl-accepting chemotaxis protein TERM 2316 1518577 - 1518525 - f 78 -7.8 -4.32607 | gap 1, opp_overlap 1518526 1518527 1518529 1518537, overlap 1518527 1518530 TTAAAATTTAATAAA CAGAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC-G TTATCCAGGGACGTG TERM 2317 1518576 - 1518527 - f 95 -11.5 -3.75005 | opp_overlap 1518527 1518526 1518529 1518537, overlap 1518525 1518530 AAAATTTAATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 2318 1518527 - 1518576 + F 85 -11.5 -2.57211 | opp_overlap 1518525 1518527 1518530, overlap 1518526 1518529 1518537 AAAATTTAATAAACA GAGTTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAAATC GTTATCCAGGGACGT TERM 2319 1518573 - 1518530 - f 86 -11.8 -2.64962 | opp_overlap 1518529 1518527 1518526 1518537, overlap 1518527 1518525 ATTTAATAAACAGAG TTCTTGGCTTCAGAGGGAGT TTTT ACTCCCACTAAAGCTTAGAA ATCGTTATCCAGGGA TERM 2320 1518656 - 1518687 + F 100 -8.2 -5.30616 | opp_overlap 1518656 AGTCATCGGATAAAA TATAGATGGCTTTT TAAG GAGAGTCATCTATA TTTTTATTTGGATAA TERM 2321 1519263 - 1519251 - g 72 -6.3 -4.21787 | AAAAAAGGTGTAAAA TTCCA TGA TGGAA AAGAACTTAAAGCGG TERM 2322 1519452 - 1519438 - g 71 -7.2 -3.76837 | TAGACAAGTTAACAA TTGGAA TAG TTCCAA AGCATGCTCTAGAAG CLD_3182 1518927 - 1520516 + | peptide/opine/nickel uptake ABC transporter substrate-binding protein CLD_3181 1520513 - 1521469 + | peptide/opine/nickel uptake ABC transporter permease CLD_3180 1521478 - 1522278 + | peptide/opine/nickel uptake ABC transporter permease TERM 2323 1522436 - 1522424 - g 87 -3.5 -5.95946 | TGAAGAAGAAAAAAA TAAAA AAA TTTTA GTTGGGAGTACTAAT CLD_3179 1522377 - 1523171 + | peptide/opine/nickel uptake ABC transporter ATP-binding protein CLD_3178 1523165 - 1523977 + | peptide/opine/nickel uptake ABC transporter ATP-binding protein TERM 2324 1524175 - 1524218 + F 100 -10.7 -4.38774 | opp_overlap 1524178, overlap 1524178 AAGTAGTCATATTTT AAAGAGTTGAATATAAATT TTAATT GATTTATATTCAACTCTTA TTTTAATATAATGTT TERM 2325 1524178 - 1524215 + F 100 -12.4 -4.29905 | opp_overlap 1524178, overlap 1524175 TAGTCATATTTTAAA GAGTTGAATATAAATT TTAATT GATTTATATTCAACTC TTATTTTAATATAAT TERM 2326 1524215 - 1524178 - f 95 -11.7 -3.64103 | opp_overlap 1524178 1524175 TAGTCATATTTTAAA GAGTTGAATATAAAT TTTAATTG ATTTATATTCAACTC TTATTTTAATATAAT TERM 2327 1524365 - 1524347 - f 70 -3.2 -5.31519 | opp_overlap 1524347 1524358, overlap 1524358 ATATTCAAATAAAAA TCTAATTA ATA TTATTAGA TAATTAATTTCATAA CLD_3177 1524421 - 1524933 + | putative lipoprotein TERM 2328 1525064 - 1525037 - T 100 -10.8 -5.31456 | opp_overlap 1525037 TTAATTTATAAAAAA GTAACACTTATA AAAT CATAAGTGTTAC TTTTTTTGTAAAGGG TERM 2329 1525037 - 1525064 + T 100 -10.1 -5.60993 | opp_overlap 1525037 TTAATTTATAAAAAA GTAACACTTAT AAAATC ATAAGTGTTAC TTTTTTTGTAAAGGG CLD_3176 1526012 - 1525224 - | manganese/zinc/iron chelate ABC transporter permease TERM 2330 1525509 - 1525499 - G 76 -2.6 -5.63645 | opp_overlap 1525499 CTAAAATAGAAAAAA TATA ATT TATA AGTTTTACTCTTACA CLD_3175 1526665 - 1526012 - | manganese/zinc/iron chelate ABC transporter ATP-binding protein TERM 2331 1526818 - 1526804 - H 73 -7.2 -4.18367 | TATTATACATATAAA TGCAAA TAG TTTGCA ATAACCTATAGAAAA CLD_3174 1526886 - 1527824 + | manganese/zinc/iron chelate ABC transporter substrate-binding protein CLD_3173 1528429 - 1527938 - | hypothetical protein TERM 2332 1528107 - 1528087 - G 75 -5.5 -4.78848 | CGGCTAAAGACAAAA CTCCTAAAA ATA TTTCAAGAG CAGAGGAACCGTAAA TERM 2333 1528830 - 1528846 + H 76 -9.5 -2.81134 | opp_overlap 1528821 1528820, overlap 1528829 TGAAAGCGATTCGCA CCAAATC GAA GATTTGG ATTCTCTGCTTTTCT TERM 2334 1528919 - 1528953 + H 72 -8.6 -3.20747 | opp_overlap 1528920 1528921 1528923 1528939, overlap 1528921 TTCCCCTAAAGGATA ACGACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTA TTAATAAGCTTTAGT TERM 2335 1528952 - 1528920 - H 95 -12.1 -3.60151 | opp_overlap 1528919 1528921, overlap 1528921 1528923 1528939 TCCCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTAAGAAGTCT ATTAATAAGCTTTAG TERM 2336 1528921 - 1528951 + H 100 -15.6 -3.16288 | opp_overlap 1528920 1528921 1528923 1528939, overlap 1528919 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TATTAATAAGCTTTA TERM 2337 1528951 - 1528921 - H 100 -15.6 -2.75769 | opp_overlap 1528921 1528919, overlap 1528920 1528923 1528939 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TATTAATAAGCTTTA TERM 2338 1528949 - 1528923 - H 89 -12.4 -2.92144 | opp_overlap 1528921 1528919, overlap 1528921 1528920 1528939 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTAAGAAG TCTATTAATAAGCTT TERM 2339 1528992 - 1528961 - H 100 -16 -3.73534 | opp_overlap 1528955 GAAGTCTATTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGC CAAGAACTCTGTTTA CLD_3172 1529083 - 1530849 + | helicase domain-containing protein CLD_3171 1530984 - 1531532 + | GGDEF domain-containing protein TERM 2340 1531575 - 1531536 - f 95 -12.7 -3.19851 | opp_overlap 1531536 1531542, overlap 1531542 1531571 AAAATAGGGTAGTAA TTAAAATATTTTGTATA TATTAT TATACAAAATATTTTAA TTTATTAAAGAAACC TERM 2341 1531536 - 1531575 + F 100 -12.7 -4.15044 | opp_overlap 1531536 1531542 1531571, overlap 1531542 AAAATAGGGTAGTAA TTAAAATATTTTGTATA TATTAT TATACAAAATATTTTAA TTTATTAAAGAAACC TERM 2342 1531569 - 1531542 - f 77 -7.3 -4.45544 | opp_overlap 1531536 1531542, overlap 1531536 GGGTAGTAATTAAAA TATTTTGTATA TATTAT TATACAAAATA TTTTAATTTATTAAA TERM 2343 1531542 - 1531569 + F 79 -7.3 -4.67942 | opp_overlap 1531542 1531536, overlap 1531536 GGGTAGTAATTAAAA TATTTTGTATA TATTAT TATACAAAATA TTTTAATTTATTAAA TERM 2344 1531764 - 1531734 - f 100 -14.3 -4.72272 | opp_overlap 1531734 1531739, overlap 1531739 CCTCCTTATTAAAAA TAAAAGAACCCTA TTTAC TAGGGTTCTTTTA TTGTATCCAAGATAT TERM 2345 1531734 - 1531764 + F 100 -14.3 -3.49102 | opp_overlap 1531734 1531739, overlap 1531739 CCTCCTTATTAAAAA TAAAAGAACCCTA TTTAC TAGGGTTCTTTTA TTGTATCCAAGATAT TERM 2346 1531739 - 1531759 + F 100 -9.8 -4.84311 | opp_overlap 1531739 1531734, overlap 1531734 TTATTAAAAATAAAA GAACCCTA TTTAC TAGGGTTC TTTTATTGTATCCAA TERM 2347 1531759 - 1531739 - f 100 -9.8 -5.3104 | opp_overlap 1531734 1531739, overlap 1531734 TTATTAAAAATAAAA GAACCCTA TTTAC TAGGGTTC TTTTATTGTATCCAA TERM 2348 1532228 - 1532218 - f 75 -4 -5.55855 | GCTAAAAAAATAAAA TTGT AGT ACAA TAATAATAAATTCTA TERM 2349 1532553 - 1532536 - gf 85 -2.1 -6.07374 | ATAAAAAAGAAAAAA TTAAAAT AGCC ACTTTAA AAGGACCTACTGGTA TERM 2350 1532897 - 1532885 - gf 70 -6.3 -4.1421 | TATATTAAAGAAGAA TGGAT TGG ATCCA GATAAGGATGTAAAA CLD_3170 1532400 - 1533407 + | putative lipoprotein TERM 2351 1533464 - 1533478 + GF 100 -11.4 -4.87665 | TCTGGGTATTTATAT GGGAGC TTA GCTCCC TTTTTATAAATAACG CLD_3169 1533379 - 1534140 + | putative ABC transporter, permease protein CLD_3168 1534280 - 1534879 + | ABC transporter, ATP-binding protein TERM 2352 1534885 - 1534906 + F 83 -7.4 -5.02287 | opp_overlap 1534885 TAAATTATAGATTAA GCAAAGAT TTTTAT ATCTTTGC TTTTATATTTTTATA CLD_3167 1534994 - 1535140 + | putative nitrogenase iron-molybdenum cofactor protein CLD_3166 1535158 - 1535631 + | FUR family transcriptional regulator CLD_3165 1535601 - 1536074 + | hypothetical protein TERM 2353 1536084 - 1536111 + F 100 -14.4 -3.44608 | opp_overlap 1536076 1536084, overlap 1536075 1536073 1536088 AAATAAATTATTAAA TTAAGCACCATT TATA AATGGTGCTTAA TTATGATGGCTGTTT TERM 2354 1536111 - 1536084 - f 100 -14.4 -3.93708 | opp_overlap 1536084 1536075 1536073 1536088, overlap 1536076 AAATAAATTATTAAA TTAAGCACCATT TATA AATGGTGCTTAA TTATGATGGCTGTTT TERM 2355 1536088 - 1536107 + F 90 -10.8 -3.4759 | opp_overlap 1536084 1536076, overlap 1536084 1536075 1536073 AAATTATTAAATTAA GCACCATT TATA AATGGTGC TTAATTATGATGGCT CLD_3164 1536201 - 1537472 + | zinc carboxypeptidase family protein rnz 1537782 - 1538822 + | ribonuclease Z CLD_3162 1539168 - 1540487 + | amino acid permease family protein CLD_3161 1540632 - 1541009 + | hypothetical protein TERM 2356 1541279 - 1541266 - g 72 -2.5 -5.42198 | TTTTAAAAAAGAAAA TATTA CAAC TAATA CAGTTATTCTAATAT TERM 2357 1541287 - 1541323 + G 95 -6.9 -5.80951 | opp_overlap 1541294 1541297 1541311 AACTAATACAGTTAT TCTAATATTATTATTTA TTA TAAATAATCAAATTAGA TTTTTTGTTTTAAAT CLD_3160 1541180 - 1542337 + | sensor histidine kinase CLD_3159 1542391 - 1543044 + | LuxR family DNA-binding response regulator TERM 2358 1543117 - 1543136 + F 80 -9.4 -3.29727 | opp_overlap 1543116 1543117 1543129, overlap 1543109 1543115 CCCCTTACTAAATAG TTAGTGAC TTAA GTCACTAA TGTTAGTTACTTAAG TERM 2359 1543136 - 1543117 - f 75 -9.4 -2.66695 | opp_overlap 1543109 1543117 1543115, overlap 1543116 1543129 CCCCTTACTAAATAG TTAGTGAC TTAA GTCACTAA TGTTAGTTACTTAAG TERM 2360 1543164 - 1543206 + F 100 -8.7 -5.93809 | opp_overlap 1543164 AAGGCAATGGTAAAA CTTCCTTAAATTTTCTATT ATATA ATTAGAAGATTTGAGGAGG TTTTTTTTATGAGCA CLD_3158 1543215 - 1544153 + | ABC transporter, ATP-binding protein TERM 2361 1544455 - 1544439 - g 71 -6.7 -4.02334 | opp_overlap 1544441 TATGTAGAGGATAAA GATAATT CAA AATTATC TAATGAATTTATAAA TERM 2362 1544937 - 1544921 - g 76 -6.7 -4.43844 | GTATTATTCAGAAAA GAAAAAT GGT ATTTTTC AAAGAACATTATCTA CLD_3157 1544259 - 1545437 + | putative ABC transporter, permease protein CLD_3156 1545439 - 1546539 + | hypothetical protein CLD_3155 1546558 - 1546776 + | hypothetical protein TERM 2363 1547235 - 1547188 - T 73 -5.7 -4.84582 | opp_overlap 1547188, overlap 1547218 AAAAAATATATAAAA GCCACTGATTACATTAAGTTT ATATAA AAACTAATTGAAATTAGTGGC TTTATATATTAAATT TERM 2364 1547188 - 1547235 + T 78 -7.9 -4.22414 | opp_overlap 1547188 1547218 AAAAAATATATAAAA GCCACTGATTACATTAAGTTT ATATAA AAACTAATTGAAATTAGTGGC TTTATATATTAAATT TERM 2365 1547483 - 1547493 + T 71 -6.8 -4.09827 | opp_overlap 1547483 TCTGTACTCTAAAAA GTGC GTC GCAC TTTCCTTATCTTATG TERM 2366 1547493 - 1547483 - T 77 -6.8 -4.62069 | opp_overlap 1547483 TCTGTACTCTAAAAA GTGC GTC GCAC TTTCCTTATCTTATG CLD_3154 1548050 - 1547499 - | nitroreductase family protein TERM 2367 1548328 - 1548302 - R 76 -8.3 -3.68348 | opp_overlap 1548300, overlap 1548277 1548300 TAGATATAAAGAATA TAGATTATATT TAATT AATATAATCTA ACCTAATAATGGGAT TERM 2368 1548518 - 1548493 - R 80 -9.3 -3.20307 | overlap 1548491 GTAAGACTATTAATA TCTTTATATAA ATAT TTATATAAAGA GCATATATTAGAAAA CLD_3153 1549099 - 1548608 - | hypothetical protein TERM 2369 1549188 - 1549172 - R 78 -5.3 -5.11112 | opp_overlap 1549166 1549153 AAAGTTTAATAAAAA TTTTATA TAA TATAAAA ACCACCTTAATAAAG TERM 2370 1549207 - 1549190 - R 100 -9.9 -5.1764 | opp_overlap 1549188 TATATAATATAAAAA CCACCTT AATA AAGGTGG CGTGGTATTTGCTAT TERM 2371 1549226 - 1549246 + r 70 -7.1 -3.68024 | opp_overlap 1549230 1549238 GGTATTTGCTATTTA TATATTAAA ATA TTTAATATA TTATATATTACAAAG CLD_3152 1549470 - 1549267 - | major cold shock protein TERM 2372 1549337 - 1549348 + g 78 -4.4 -5.4833 | AATTGAACTTTTTGT CCTT CTTC AAGG TTTTTTCTTGGCTCA pepD 1549737 - 1551200 + | aminoacyl-histidine dipeptidase TERM 2373 1551302 - 1551278 - g 87 -3.7 -5.89947 | opp_overlap 1551281, overlap 1551281 CAAATCTAAAAAAAA TATTATAATAG GTG CTACTATATTA ATTTTAATTACACTA CLD_3150 1551258 - 1552151 + | TPR domain-containing protein TERM 2374 1552196 - 1552177 - f 100 -9.4 -5.82036 | opp_overlap 1552177 ACAATAAATAAAAAA TTGTGCTT GATT AAGCACAA TTTTTTTTGTTTTTG TERM 2375 1552177 - 1552196 + F 100 -9.4 -6.4275 | opp_overlap 1552177 ACAATAAATAAAAAA TTGTGCTT GATT AAGCACAA TTTTTTTTGTTTTTG TERM 2376 1552347 - 1552328 - f 83 -9.4 -3.5556 | overlap 1552331 CAAATTTCAAATTAA CAACTGTA TGGA TACAGTTG AAAAAATATTAAATT TERM 2377 1552404 - 1552435 + F 95 -10.9 -3.62522 | overlap 1552404 TAAACAGAGTTCTTG GCTTCGGAGGGAG CTTTTA CTCCCTCTAAAGC TTATTAACAGAATTC TERM 2378 1552440 - 1552479 + F 73 -8.8 -2.90615 | gap 1, opp_overlap 1552448, overlap 1552444 1552445 1552447 CCCTCTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 2379 1552445 - 1552475 + F 79 -9.8 -2.75769 | opp_overlap 1552448, overlap 1552444 1552440 1552447 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 2380 1552472 - 1552448 - f 90 -10.1 -3.71552 | opp_overlap 1552447 1552445 1552444 1552440 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 2381 1552557 - 1552513 - f 90 -11.7 -3.08133 | gap 2, opp_overlap 1552523 TATCCAGGGACGTAA CCGCTCT-TTACTCCCA-CTT TAAAG AAGATGGGAGTATTAGAGCGG GTAGTCATCGGATAA pdxK 1552599 - 1553435 + | pyridoxine kinase TERM 2382 1553615 - 1553664 + T 100 -11.9 -4.32034 | gap 1, opp_overlap 1553621 1553624, overlap 1553624 TTAATCATAGGTAAG TTAAAAGAGGTTGCCTGAAAATAA AAT TTATTTTCAGACAAC-TCTTCTAA TTTTAGTGGTAATAA TERM 2383 1553658 - 1553621 - T 100 -13.1 -4.29176 | gap 1, opp_overlap 1553615 1553624, overlap 1553624 ATAGGTAAGTTAAAA GAGGTTGCCTGAAAATAA AAT TTATTTTCAGACAAC-TC TTCTAATTTTAGTGG TERM 2384 1553624 - 1553656 + T 100 -13.7 -3.42359 | opp_overlap 1553621 1553624, overlap 1553615 GGTAAGTTAAAAGAG GTTGCCTGAAAATAA AAT TTATTTTCAGACAAC TCTTCTAATTTTAGT TERM 2385 1553656 - 1553624 - T 100 -15.9 -2.83906 | opp_overlap 1553624 1553615, overlap 1553621 GGTAAGTTAAAAGAG GTTGCCTGAAAATAA AAT TTATTTTCAGACAAC TCTTCTAATTTTAGT CLD_3148 1554361 - 1553723 - | putative methionine-S-sulfoxide reductase TERM 2386 1554701 - 1554669 - H 95 -12.2 -3.71517 | opp_overlap 1554670, overlap 1554670 1554673 TAATAGTGAATATAA GTAAGGAGATAAGC GTAAT GCTTATCTCCTTAT TTTTTTATAATGTTA TERM 2387 1554700 - 1554670 - H 100 -15.7 -2.82187 | opp_overlap 1554670, overlap 1554669 1554673 AATAGTGAATATAAG TAAGGAGATAAGC GTAAT GCTTATCTCCTTA TTTTTTTATAATGTT TERM 2388 1554670 - 1554700 + H 100 -16.4 -5.70829 | opp_overlap 1554670 1554669 1554673 AATAGTGAATATAAG TAAGGAGATAAGCG TAA TGCTTATCTCCTTA TTTTTTTATAATGTT TERM 2389 1554697 - 1554673 - H 95 -13 -3.54784 | opp_overlap 1554670, overlap 1554670 1554669 AGTGAATATAAGTAA GGAGATAAGC GTAAT GCTTATCTCC TTATTTTTTTATAAT CLD_3147 1555176 - 1555940 + | peptide ABC transporter ATP-binding protein TERM 2390 1556071 - 1556057 - g 74 -7.2 -3.88618 | opp_overlap 1556056 AATATAATGATCAAA TTGCTA ATG TAGCAA ATGGTATGAAAACTG CLD_3146 1555927 - 1557816 + | peptide ABC transporter permease TERM 2391 1557972 - 1557955 - f 71 -5.7 -4.72386 | GAAAGCATGTAAAAA TATTCAA TAAA TTGAATA AAAAGCAGGAGGAAA CLD_3145 1557993 - 1558490 + | hypothetical protein CLD_3144 1558933 - 1559634 + | DNA-binding response regulator CLD_3143 1559636 - 1560613 + | sensor histidine kinase TERM 2392 1560934 - 1560946 + G 71 -4.9 -4.78848 | opp_overlap 1560934, overlap 1560929 GAAGGAAATTTAGAA GAAAA AAA TTTTC TTTTGTATTTCAAGA CLD_3142 1560798 - 1561442 + | peptide ABC transporter ATP-binding protein TERM 2393 1562345 - 1562331 - g 81 -7.2 -4.62708 | opp_overlap 1562331 1562329 AATAGATAAAAAGAA GGATAT TTT ATATCC TATTGATATAGCTTA TERM 2394 1562619 - 1562599 - g 75 -4.1 -5.27399 | opp_overlap 1562598 GAAGATATTAAAAAA TATTATTTC AAT GAAGTAATA AATATTAATGGTAAT CLD_3141 1561432 - 1563240 + | peptide ABC transporter permease CLD_3140 1563309 - 1564031 + | hypothetical protein TERM 2395 1564567 - 1564583 + G 81 -9.5 -3.65425 | GAAGATTGCTTATTT TCTGCTA CTG TAGCAGA TTTAGACTATATAGG TERM 2396 1565227 - 1565216 - g 70 -4.4 -4.91109 | CTTGGAGTATAAAAA CAGA AATA TCTG ATAAGGTAAATCTTA CLD_3139 1564378 - 1565412 + | hypothetical protein TERM 2397 1565432 - 1565466 + F 100 -11 -5.17744 | opp_overlap 1565422 1565426 1565432 1565435 TATAATAAACTTAAA TAAGTCTATAAAGATA TTG TAACTTTATAGGCTTA TTTTTATTGATATGT TERM 2398 1565466 - 1565432 - f 81 -8.8 -3.94868 | opp_overlap 1565432, overlap 1565422 1565426 1565435 TATAATAAACTTAAA TAAGTCTATAAAGATA TTG TAACTTTATAGGCTTA TTTTTATTGATATGT CLD_3138 1565795 - 1566973 + | aminotransferase, classes I and II CLD_3137 1567161 - 1567979 + | amino acid ABC transporter, amino acid-binding protein CLD_3136 1567992 - 1568657 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 2399 1569085 - 1569074 - g 72 -4.4 -5.09762 | opp_overlap 1569060 ATTGGAAGATAAAAA GGAT TATT ATCC TTCCAAGTTATCTGG CLD_3135 1568676 - 1569413 + | polar amino acid ABC transporter ATP-binding protein CLD_3134 1569839 - 1570057 + | putative DNA-binding protein TERM 2400 1570209 - 1570155 - T 72 -9.1 -2.65091 | opp_overlap 1570157 1570170, overlap 1570154 1570170 ATGTGAATTTACAAT TGTATATAATAAAAACACTATCA TTTATATTT TGATAGTGTTTTTATTATATATT TAAAGTATATTAGCA TERM 2401 1570157 - 1570207 + T 100 -16.1 -3.66883 | opp_overlap 1570155 1570154 1570170, overlap 1570170 GTGAATTTACAATTG TATATAATAAAAACACTATCA TTTATATTT TGATAGTGTTTTTATTATATA TTTAAAGTATATTAG TERM 2402 1570194 - 1570170 - T 73 -4.4 -5.24796 | opp_overlap 1570157 1570170, overlap 1570155 1570154 TGTATATAATAAAAA CACTATCA TTTATATTT TGATAGTG TTTTTATTATATATT TERM 2403 1570170 - 1570194 + T 76 -4.4 -5.28561 | opp_overlap 1570170 1570155 1570154, overlap 1570157 TGTATATAATAAAAA CACTATCA TTTATATTT TGATAGTG TTTTTATTATATATT CLD_3133 1571530 - 1570256 - | D-alanyl-D-alanine carboxypeptidase family protein TERM 2404 1570888 - 1570929 + g 71 -3.2 -5.20735 | overlap 1570889 1570890 AAAGCTTATTACTAT TTTCTATAGTCATTTTTG TACCTT TAGAAGTGACTATAGAGC TTTCTTTTTTATTAG CLD_3132 1571829 - 1572452 + | MutT/NUDIX NTP pyrophosphatase TERM 2405 1572458 - 1572510 + T 100 -13.1 -5.36314 | opp_overlap 1572458 1572470 AAAAAATTAATAAAA GTATATTAAATATTCCACCAACT TTTAATT AGTTGGTGGAATGTTTTAAATAC TTTTTTCCTGTTTTC TERM 2406 1572510 - 1572458 - T 100 -10.9 -4.95211 | opp_overlap 1572458, overlap 1572470 AAAAAATTAATAAAA GTATATTAAATATTCCACCAACT TTTAATT AGTTGGTGGAATGTTTTAAATAC TTTTTTCCTGTTTTC TERM 2407 1572498 - 1572470 - T 95 -11.9 -3.53452 | opp_overlap 1572458, overlap 1572458 AAAGTATATTAAATA TTCCACCAACT TTTAATT AGTTGGTGGAA TGTTTTAAATACTTT CLD_3131 1572850 - 1572503 - | hypothetical protein CLD_3130 1573196 - 1574359 + | NADH-dependent butanol dehydrogenase TERM 2408 1574744 - 1574754 + G 72 -5.4 -4.7329 | AAAGGGGAATTTTTA TGGA ATG TCCA TTTTTAACTACTTTT CLD_3129 1574743 - 1574967 + | hypothetical protein TERM 2409 1575097 - 1575057 - f 100 -13.7 -3.51232 | overlap 1575053 TTTTGCTTAAAGCAA TATCTATACACTTAAAATA TTA TGCTTTAAGTGTATAGATA AGAAGCGATGCTTGA CLD_3128 1575140 - 1576660 + | C4-dicarboxylate transporter TERM 2410 1576726 - 1576673 - T 100 -7.8 -5.5074 | opp_overlap 1576675 1576680, overlap 1576675 1576680 TAATGTAATAAAAAA TTCAAAAGCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTATT GCTTATTATAAGTTA TERM 2411 1576675 - 1576724 + T 95 -12.6 -3.5861 | opp_overlap 1576673 1576675 1576680, overlap 1576680 ATGTAATAAAAAATT CAAAAGCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTA TTGCTTATTATAAGT TERM 2412 1576724 - 1576675 - T 100 -14.8 -2.91664 | opp_overlap 1576675 1576680, overlap 1576673 1576680 ATGTAATAAAAAATT CAAAAGCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGCTTTTA TTGCTTATTATAAGT TERM 2413 1576680 - 1576719 + T 100 -12.5 -4.84262 | opp_overlap 1576675 1576673 1576680, overlap 1576675 ATAAAAAATTCAAAA GCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGC TTTTATTGCTTATTA TERM 2414 1576719 - 1576680 - T 100 -12.5 -4.55016 | opp_overlap 1576680 1576675, overlap 1576675 1576673 ATAAAAAATTCAAAA GCTATGAATTGAAAAAT TTTATT ATATTTCAATTCATAGC TTTTATTGCTTATTA CLD_3127 1578280 - 1576799 - | putative nicotinate phosphoribosyltransferase TERM 2415 1577992 - 1578010 + g 72 -7.6 -3.62522 | opp_overlap 1577991 AAGAAAATTTAAAGT TTTTTAGA TAG TCTAAAAA TTCTTCGGAAAATTC CLD_3126 1578739 - 1579545 + | polar amino acid ABC transporter amino acid-binding protein TERM 2416 1579991 - 1580004 + G 72 -5.3 -4.79667 | CAAATATCTGTACCT CCATT AGTA AATGG TTTTTCATCACTTTT CLD_3125 1579547 - 1580206 + | His/Glu/Gln/Arg/opine ABC transporter permease TERM 2417 1580273 - 1580287 + F 100 -10 -5.56263 | GTATTTGATTATTTC GCAGCT AAA AGCTGC TTTTTCTTTTGTAAT TERM 2418 1580481 - 1580496 + G 82 -6.8 -4.85599 | opp_overlap 1580478, overlap 1580478 GAATAATACAATTGC CCTGTC CAGA GGCAGG TTTTTATGGAATGAG CLD_3124 1580336 - 1580884 + | hypothetical protein CLD_3123 1580979 - 1582991 + | hypothetical protein CLD_3122 1583342 - 1583644 + | hypothetical protein TERM 2419 1583816 - 1583786 - f 72 -8.5 -3.19921 | opp_overlap 1583786 ATATAATTTTATTAA GCTCATATTCT AAAAATTAG AGAATATGAGC TTTTAAATTAAGAAA TERM 2420 1583786 - 1583816 + F 80 -8.5 -4.27316 | opp_overlap 1583786 ATATAATTTTATTAA GCTCATATTCT AAAAATTAG AGAATATGAGC TTTTAAATTAAGAAA CLD_3121 1583847 - 1586075 + | putative cell division protein FtsA TERM 2421 1586448 - 1586424 - g 83 -3 -5.80364 | ACTTCAAGAAAAAAA TATTTGTGAT TATTC ATCAAAAATA GAAGGGAAAATGCAT TERM 2422 1586754 - 1586743 - g 78 -4.4 -5.3658 | overlap 1586721 1586750 ACCATAAAAATAAAA GGAA AGGG TTCC CATGGAGCTAGGCCT TERM 2423 1586940 - 1586904 - g 72 -6.9 -4.16943 | gap 1 GGGTACAGCTCAAAA TATAATACCAGATGAG GTTATA CT-ATCTGGCATTATA AGAGTGATGAAAACT CLD_3120 1586164 - 1587342 + | amidohydrolase family protein TERM 2424 1588033 - 1588022 - g 71 -3 -5.32565 | opp_overlap 1588022 CAATTAAGCAAAAAA TATG GAGA CATA CTTCTTAGGGAAATG CLD_3119 1587398 - 1588249 + | N-acetylmuramoyl-L-alanine amidase TERM 2425 1588291 - 1588343 + F 100 -13.9 -3.55203 | opp_overlap 1588296 1588298, overlap 1588294 TTAATGTTATATGTT TAATATATTCCACTAAGGTAAATTT TTC ATGTTTACTTTAGTGGAATATCTTA TTTAAAGAAACTTTT TERM 2426 1588294 - 1588340 + F 100 -11.2 -3.90922 | opp_overlap 1588296 1588298, overlap 1588291 ATGTTATATGTTTAA TATATTCCACTAAGGTAAATTT TTC ATGTTTACTTTAGTGGAATATC TTATTTAAAGAAACT TERM 2427 1588338 - 1588296 - f 78 -9.5 -3.05343 | opp_overlap 1588294 1588291, overlap 1588298 GTTATATGTTTAATA TATTCCACTAAGGTAAA TTTTTCATG TTTACTTTAGTGGAATA TCTTATTTAAAGAAA CLD_3118 1588729 - 1589682 + | RluA family pseudouridine synthase spoVB 1589714 - 1591321 + | stage V sporulation protein B TERM 2428 1591363 - 1591327 - T 100 -11.1 -5.86465 | opp_overlap 1591327 AATAAGATAAAAAAA CATTAGATTGGCAAG GTGTTTT CTTGCTAATCTAATG TTTTTTATTTGTAAT TERM 2429 1591327 - 1591363 + T 100 -14 -5.73978 | opp_overlap 1591327 AATAAGATAAAAAAA CATTAGATTGGCAAGG TGTTT TCTTGCTAATCTAATG TTTTTTATTTGTAAT CLD_3116 1592863 - 1591358 - | polysaccharide biosynthesis family protein TERM 2430 1592218 - 1592231 + g 72 -2.5 -5.36441 | TATTATAGCTAAATT TAAAT TTCA ATTTA TTTTTTATATAAAAA CLD_3115 1593195 - 1593758 + | hypothetical protein TERM 2431 1593781 - 1593756 - T 100 -9.2 -5.10877 | opp_overlap 1593756 ATAATAAATGAAAAA TAGAACTTAG ATTTAA CTAAGTTCTA TTTTTTAACCCTTTG TERM 2432 1593756 - 1593781 + T 100 -9.2 -5.07107 | opp_overlap 1593756 ATAATAAATGAAAAA TAGAACTTAG ATTTAA CTAAGTTCTA TTTTTTAACCCTTTG CLD_3114 1594186 - 1593779 - | hypothetical protein TERM 2433 1594797 - 1594783 - H 90 -10 -3.71848 | opp_overlap 1594771 1594782 1594781 TGTGGGTAGTAATAA CTACGC CTT GCGTAG AGCTTTTATAACTTT TERM 2434 1594936 - 1594892 - H 100 -10.4 -4.43832 | opp_overlap 1594898 1594933, overlap 1594889 TAATATATAAAAGAA TAAGAAGCCAAATTACTT TTATTATTT AAGTAATTTGGCTTTTTA TATAAATAATTTAAT TERM 2435 1594898 - 1594930 + H 100 -9.4 -4.99035 | opp_overlap 1594892 1594889 ATAAAAGAATAAGAA GCCAAATTACTT TTATTATTT AAGTAATTTGGC TTTTTATATAAATAA TERM 2436 1595401 - 1595391 - g 72 -2.6 -5.49569 | GAGCAATAGAAAAAA TATA TGA TATA GCATCTAATTTGAAA TERM 2437 1595823 - 1595841 + G 70 -8.2 -3.09415 | opp_overlap 1595821 1595822 1595825, overlap 1595826 AAAAAGAATACAAGC CAGCCATA GCC TATGGTTG TATATATCCTTTATA CLD_3113 1595303 - 1596502 + | alcohol dehydrogenase, iron-containing TERM 2438 1596555 - 1596531 - f 79 -7.3 -4.6391 | AATAATCATAGAAAA GCTTTTATATA GTG TATATGAAAGC AAAAAAATTAATTTA TERM 2439 1596636 - 1596615 - f 70 -4.6 -5.04325 | opp_overlap 1596617 1596628 TGGAAATGATAAAAA TATAAATG TGCTCT CATTTATA TTAAGCCTTCTTAAA TERM 2440 1597616 - 1597628 + G 72 -4.1 -5.11613 | overlap 1597600 AGTTTGAAGATAATA TTCAG GCT CTGGA TTTTTTAAATAGTGT CLD_3112 1596862 - 1599180 + | ATP-dependent protease TERM 2441 1600431 - 1600485 + T 72 -6.3 -4.43669 | gap 1, opp_overlap 1600422 1600437 1600441, overlap 1600437 1600441 ATATAATATAATTAT TATATATAAATAAGATGATTTCT-AT GCAA ATAAGAAATTATCTTATTTATTTAAA TTTAGTTTTTTACAT TERM 2442 1600437 - 1600479 + T 86 -9.7 -3.91846 | gap 1, opp_overlap 1600437 1600441, overlap 1600431 1600441 TATAATTATTATATA TAAATAAGATGATTTCT-AT GCAA ATAAGAAATTATCTTATTTA TTTAAATTTAGTTTT TERM 2443 1600441 - 1600475 + T 72 -6.1 -4.53439 | gap 1, opp_overlap 1600441 1600437, overlap 1600437 1600431 ATTATTATATATAAA TAAGATGATTTCT-AT GCAA ATAAGAAATTATCTTA TTTATTTAAATTTAG npr 1602252 - 1600531 - | thermolysin metallopeptidase TERM 2444 1601382 - 1601404 + g 100 -9.4 -5.20606 | AGCCTATATATTTAT TATTTATATC ATA GATATAAATA TTTTTGTTGCTATTT TERM 2445 1602280 - 1602334 + r 86 -9.1 -4.49041 | opp_overlap 1602286 1602290 1602293, overlap 1602286 1602290 CCCCAATATAATTAT TATATATAAATAAGATGATTTCT TACTTGAAT AGAAATCATCTTATTTATTTAAA TTTAGTTTTTTATAT TERM 2446 1602286 - 1602328 + r 100 -12.5 -3.91846 | opp_overlap 1602286 1602290 1602293, overlap 1602280 1602290 TATAATTATTATATA TAAATAAGATGATTTCT TACTTGAAT AGAAATCATCTTATTTA TTTAAATTTAGTTTT TERM 2447 1602328 - 1602286 - R 90 -12.5 -2.98729 | opp_overlap 1602286 1602280 1602290, overlap 1602290 1602293 TATAATTATTATATA TAAATAAGATGATTTCT TACTTGAAT AGAAATCATCTTATTTA TTTAAATTTAGTTTT TERM 2448 1602290 - 1602324 + r 86 -8.9 -4.53439 | opp_overlap 1602286 1602290 1602293, overlap 1602286 1602280 ATTATTATATATAAA TAAGATGATTTCT TACTTGAAT AGAAATCATCTTA TTTATTTAAATTTAG TERM 2449 1602324 - 1602290 - R 82 -8.9 -4.15632 | opp_overlap 1602290 1602286 1602280, overlap 1602286 1602293 ATTATTATATATAAA TAAGATGATTTCT TACTTGAAT AGAAATCATCTTA TTTATTTAAATTTAG npr 1604159 - 1602381 - | thermolysin metallopeptidase TERM 2450 1603893 - 1603910 + g 78 -4.1 -5.40072 | overlap 1603894 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCAAA TERM 2451 1603894 - 1603909 + g 74 -7.6 -3.83561 | overlap 1603893 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCAA npr 1606068 - 1604275 - | thermolysin metallopeptidase TERM 2452 1605793 - 1605810 + g 78 -4.1 -5.40072 | overlap 1605794 ATCTTTTAAAGTTTT AGTACTC TTAA GAGTACC TTTTTTTACCCCGAA TERM 2453 1605794 - 1605809 + g 74 -7.6 -3.83561 | overlap 1605793 TCTTTTAAAGTTTTA GTACTC TTAA GAGTAC CTTTTTTTACCCCGA TERM 2454 1606101 - 1606148 + r 100 -16.2 -4.56358 | opp_overlap 1606108 TTAATATATTTTTAC TTATAAACCTATTGATATTT ATATAGCA AAATATCAATAGGTTTATAA TTTTATATAGATATA TERM 2455 1606141 - 1606108 - R 93 -9.9 -3.92075 | opp_overlap 1606101 ATTTTTACTTATAAA CCTATTGATATTT ATATAGCA AAATATCAATAGG TTTATAATTTTATAT npr 1607933 - 1606188 - | thermolysin metallopeptidase TERM 2456 1607967 - 1608014 + r 100 -15.6 -4.53303 | gap 1, opp_overlap 1607974 ATAGCATATTTTTAC TTATAAACCTATTAATATTTATA TAG TA-AAATATTAATAGGTTTATAA TTTTATATAAGAATA TERM 2457 1608007 - 1607974 - R 86 -9.3 -3.92075 | gap 1, opp_overlap 1607967 ATTTTTACTTATAAA CCTATTAATATTTATA TAG TA-AAATATTAATAGG TTTATAATTTTATAT CLD_3104 1609793 - 1608054 - | bacillolysin TERM 2458 1609311 - 1609322 + g 70 -4.4 -4.98522 | opp_overlap 1609300, overlap 1609302 1609300 GCTATCGCATTTTAT GCTA TCTT TAGC TTTTTCTATAGCATT nadC 1611234 - 1610398 - | nicotinate-nucleotide pyrophosphorylase TERM 2459 1610695 - 1610710 + g 74 -3.3 -5.4505 | AGGGGCATTGTTTTT TGCTA AAGTTA TAGCA TTTTTTATTCCACCA nadB 1612516 - 1611215 - | L-aspartate oxidase TERM 2460 1612474 - 1612458 - G 71 -7.3 -3.70902 | TTTCTTAGATTTAAA GCTGAAT ATA ATCCAGC TACGCCGCTTCCTGC nadA 1613433 - 1612519 - | quinolinate synthetase complex, A subunit TERM 2461 1612672 - 1612699 + g 95 -6.4 -5.93252 | GCAGGTCATTCCTTC TCCAGGGAAATA GAAT TGTTTTTCTGGA TTTTTTATTTTTAAC TERM 2462 1614329 - 1614313 - g 70 -5.3 -4.57474 | GGAAGGCAGACAAAA TAAAAAT AGT ATTTTTA GATAACGAGGAAAGC CLD_3100 1613805 - 1614731 + | hypothetical protein hlyIII 1615466 - 1614828 - | hemolysin III TERM 2463 1615074 - 1615094 + g 72 -7 -4.17023 | AGTGGATAGTTTTTC GTATTTAC CAGTT GTAAATAC TTTTAAAATGATTCC TERM 2464 1615527 - 1615582 + r 81 -10.3 -2.53911 | gap 1, opp_overlap 1615522 1615531 1615533 1615544, overlap 1615522 1615544 GGTAAAAGTATGTAC TATACATTAATAAAAAATCACCATTG CTAAC CAATAGTGATTTTTTATTAATG-AGA TAGATTAAACGTTAA TERM 2465 1615579 - 1615531 - R 100 -20.2 -2.82208 | opp_overlap 1615522 1615527 1615544, overlap 1615522 1615533 1615544 AAAGTATGTACTATA CATTAATAAAAAATCACCATTG CTAAC CAATAGTGATTTTTTATTAATG AGATAGATTAAACGT TERM 2466 1615577 - 1615533 - R 100 -17 -2.95476 | opp_overlap 1615527 1615544, overlap 1615531 1615544 AGTATGTACTATACA TTAATAAAAAATCACCATTG CTAAC CAATAGTGATTTTTTATTAA TGAGATAGATTAAAC TERM 2467 1615566 - 1615544 - R 91 -7.1 -5.5353 | opp_overlap 1615527 1615544, overlap 1615533 1615531 TACATTAATAAAAAA TCACCATTG CTAAC CAATAGTGA TTTTTTATTAATGAG TERM 2468 1615544 - 1615566 + r 79 -4.9 -5.5112 | opp_overlap 1615544 1615533 1615531, overlap 1615527 TACATTAATAAAAAA TCACCATTG CTAAC CAATAGTGA TTTTTTATTAATGAG ychF 1616684 - 1615587 - | GTP-binding protein YchF mraZ 1617377 - 1617847 + | mraZ protein TERM 2469 1618070 - 1618053 - g 88 -4.1 -5.66989 | opp_overlap 1618053, overlap 1618056 GAAATATTAAAAAAA TTATCCC ATAA GGGAAAA TTAATAGGCATAGAT TERM 2470 1618466 - 1618448 - g 90 -8.2 -4.90321 | AAAAAGAACAGAAAA TCCTATAG AGA CTACAGGA GAATTAGTAGAGATA mraW 1617927 - 1618856 + | S-adenosyl-methyltransferase MraW CLD_3095 1618938 - 1619441 + | putative cell division protein FtsL TERM 2471 1619774 - 1619762 - g 78 -6.3 -4.7329 | AAAACTATCTAAAAA TGATG TAG CATCA AAACTTTCAAAAGCA CLD_3094 1619457 - 1621637 + | stage V sporulation protein D TERM 2472 1621648 - 1621692 + F 81 -7.4 -4.81852 | gap 1, opp_overlap 1621650, overlap 1621650 1621687 ATTAATATAATAAAA AATTGGCATGCAGTAATACAG GGTT CTGTG-TATTGCATGCTAATA TTTTGTTAGTTCTAC TERM 2473 1621690 - 1621650 - f 77 -3.4 -5.64304 | gap 1, opp_overlap 1621648 1621650 1621687 TAATATAATAAAAAA TTGGCATGCAGTAATACAG GGTT CTGTGT-ATTGCATGCTAA TATTTTGTTAGTTCT TERM 2474 1621650 - 1621690 + F 93 -10 -4.01597 | gap 1, opp_overlap 1621650, overlap 1621648 1621687 TAATATAATAAAAAA TTGGCATGCAGTAATACAG GGTT CTGTG-TATTGCATGCTAA TATTTTGTTAGTTCT murE 1621869 - 1623320 + | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase murF 1623346 - 1624734 + | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase TERM 2475 1624918 - 1624908 - g 80 -2.4 -5.72616 | opp_overlap 1624908 1624913, overlap 1624909 AGTCATAGAAAAAAA GCGG GTA CCCC TACTATGGGAGGAGT mraY 1624770 - 1625723 + | phospho-N-acetylmuramoyl-pentapeptide-transferase CLD_3090 1625802 - 1626914 + | cell cycle protein FtsW TERM 2476 1626950 - 1626907 - f 73 -7.9 -3.78026 | gap 1, opp_overlap 1626908 1626919 1626941, overlap 1626908 1626910 1626919 GGCAAACTGAAAATA CTATATAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTATATAT TCTTAAATTAATATT TERM 2477 1626908 - 1626949 + F 95 -11.4 -3.74928 | gap 1, opp_overlap 1626908 1626907 1626910 1626919, overlap 1626919 1626941 GCAAACTGAAAATAC TATATAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTATATA TTCTTAAATTAATAT TERM 2478 1626949 - 1626908 - f 85 -11.4 -2.86093 | gap 1, opp_overlap 1626908 1626919 1626941, overlap 1626907 1626910 1626919 GCAAACTGAAAATAC TATATAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTATATA TTCTTAAATTAATAT TERM 2479 1626947 - 1626910 - f 78 -9.6 -2.96755 | gap 1, opp_overlap 1626908 1626919 1626941, overlap 1626908 1626907 1626919 AAACTGAAAATACTA TATAAAAA-ATAGCAAC ATTTA GTTGCTATTTTTTTATA TATTCTTAAATTAAT TERM 2480 1626937 - 1626919 - f 100 -7.5 -5.40625 | opp_overlap 1626908 1626919, overlap 1626910 1626908 1626907 ATACTATATAAAAAA TAGCAAC ATTTA GTTGCTA TTTTTTTATATATTC TERM 2481 1626919 - 1626937 + F 100 -7.5 -5.80248 | opp_overlap 1626919 1626910 1626908 1626907, overlap 1626908 ATACTATATAAAAAA TAGCAAC ATTTA GTTGCTA TTTTTTTATATATTC TERM 2482 1626975 - 1626950 - f 76 -9.3 -2.87564 | opp_overlap 1626941 CTATTTTTTTATATA TTCTTAAATTA ATAT TAATTTAAGAA TACTAAGATATAGTT TERM 2483 1627513 - 1627484 - g 79 -5.9 -5.16841 | gap 1, opp_overlap 1627483 TTATACTAACAAAAA GGATGCAATAGAAA ATA TTTC-ATTGAATCC ATATATTGAAGAAGT CLD_3089 1627242 - 1628012 + | cell division protein FtsQ TERM 2484 1628575 - 1628561 - g 77 -7.2 -4.35474 | CAAATAAAAGAATAA CTATAG AAG CTATAG GAAACAAAGACTTAT CLD_3088 1628023 - 1628736 + | hypothetical protein sbp 1628770 - 1629120 + | small basic protein CLD_3086 1629121 - 1629852 + | hypothetical protein CLD_3085 1629945 - 1630616 + | hypothetical protein CLD_3084 1630637 - 1631089 + | hypothetical protein CLD_3083 1631106 - 1631381 + | YGGT family protein TERM 2485 1631882 - 1631866 - g 83 -8 -4.67755 | opp_overlap 1631866 AGATGGATTTAAAAA CTCAGG TAATT CCTGAG TTTAATTTTCAAGAA TERM 2486 1631866 - 1631882 + G 79 -8 -4.19735 | opp_overlap 1631866 AGATGGATTTAAAAA CTCAGG TAATT CCTGAG TTTAATTTTCAAGAA CLD_3082 1631382 - 1632152 + | hypothetical protein divIVA 1632168 - 1632827 + | cell-division initiation protein DivIVA TERM 2487 1632827 - 1632863 + F 100 -14 -2.77109 | opp_overlap 1632828 1632833, overlap 1632833 TATAAAAGAGGATTA ACAAAAGAGTTTTTGC ATATA GCAAAAACTCTTTTGA GTTATGTATAAGTTT TERM 2488 1632862 - 1632828 - f 100 -17.5 -3.3341 | opp_overlap 1632827 1632833, overlap 1632833 ATAAAAGAGGATTAA CAAAAGAGTTTTTGC ATATA GCAAAAACTCTTTTG AGTTATGTATAAGTT TERM 2489 1632857 - 1632833 - f 100 -11.6 -4.74215 | opp_overlap 1632827 1632833, overlap 1632828 AGAGGATTAACAAAA GAGTTTTTGC ATATA GCAAAAACTC TTTTGAGTTATGTAT TERM 2490 1632833 - 1632857 + F 100 -11.6 -4.3487 | opp_overlap 1632833 1632828, overlap 1632827 AGAGGATTAACAAAA GAGTTTTTGC ATATA GCAAAAACTC TTTTGAGTTATGTAT aroB 1633235 - 1634323 + | 3-dehydroquinate synthase mtnN 1634324 - 1635016 + | MTA/SAH nucleosidase aroF 1635137 - 1635937 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2491 1636074 - 1636040 - f 77 -6.9 -4.66953 | gap 1, opp_overlap 1636042 1636048, overlap 1636044 TTAATAGGTTAAAAA TAGA-TTAATATAATT ATAA AATTATATTAAATCTA AATTAATATTAAGAA TERM 2492 1636069 - 1636044 - f 72 -7.9 -3.54926 | opp_overlap 1636042 1636048, overlap 1636040 TAGGTTAAAAATAGA TTAATATAATT ATAA AATTATATTAA ATCTAAATTAATATT aroA 1636104 - 1637432 + | 3-phosphoshikimate 1-carboxyvinyltransferase CLD_3076 1637649 - 1638272 + | putative RNA polymerase-binding protein DksA TERM 2493 1638498 - 1638459 - f 73 -8.8 -2.90615 | gap 1, opp_overlap 1638466, overlap 1638462 1638463 1638465 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGGG TERM 2494 1638493 - 1638463 - f 79 -9.8 -2.75769 | opp_overlap 1638466, overlap 1638462 1638459 1638465 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 2495 1638466 - 1638490 + F 90 -10.1 -3.71552 | opp_overlap 1638465 1638463 1638462 1638459 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 2496 1638534 - 1638503 - f 89 -10.2 -3.62522 | opp_overlap 1638499 GAATTCTGTTAATAA GCTTTAGTGGGAGT AAAA ATTCCCTCTAAAGC CAAGAATTTTGTTTA lspA 1638728 - 1639171 + | signal peptidase II CLD_3074 1639175 - 1640092 + | RluA family pseudouridine synthase TERM 2497 1640440 - 1640410 - f 80 -9.8 -2.7736 | opp_overlap 1640413, overlap 1640407 ATCTACACGGAATTA TTATGCCTTTACTC ACA GAGTAAAGGCATTT TTTATCTGATGATTA TERM 2498 1640413 - 1640437 + F 100 -15.9 -5.39721 | opp_overlap 1640410 1640407 TACACGGAATTATTA TGCCTTTACTC ACA GAGTAAAGGCA TTTTTTATCTGATGA TERM 2499 1640724 - 1640713 - g 73 -5.8 -4.5448 | TAGGTATAAAAAGAA GAGG GTAC CCTC TAGCTAAGAGAATAG pyrR 1640589 - 1641125 + | pyrimidine operon regulatory protein/uracil phosphoribosyltransferase CLD_3072 1641169 - 1642512 + | uracil permease xth 1643075 - 1643836 + | exodeoxyribonuclease III CLD_3070 1644060 - 1645202 + | putative methyltransferase CLD_3069 1645433 - 1645978 + | hypothetical protein TERM 2500 1646254 - 1646242 - g 86 -3.3 -5.89921 | AGTAGAAGAAAAAAA GGAAG ATA CATCC AGTAAGAAAGAATCT modA 1646156 - 1646971 + | molybdate ABC transporter, periplasmic molybdate-binding protein TERM 2501 1647358 - 1647337 - g 79 -7.3 -4.41353 | overlap 1647348 CCATATATATGAAAA TGCAGCAAG AACA CTTGGTGCA AGTGAATGGAGGATT TERM 2502 1647362 - 1647348 - g 80 -8.6 -3.76778 | overlap 1647337 AAAATGCAGCAAGAA CACTTG GTG CAAGTG AATGGAGGATTTTTT modB 1646981 - 1647652 + | molybdate ABC transporter, permease protein TERM 2503 1647860 - 1647809 - f 75 -8.8 -3.28924 | opp_overlap 1647809 1647810 1647813, overlap 1647810 1647812 1647838 TACGTCCCTGGATAA CGATTTCTAAGCTTCAGATGGAAT AAAA ACTCCCTCTGAAGCCAAGAACTCT GTTTATAAAATTACA TERM 2504 1647810 - 1647859 + F 72 -7.9 -3.55191 | opp_overlap 1647809 1647810 1647812 1647838, overlap 1647809 1647813 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGATGGAAT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATAAAATTAC TERM 2505 1647859 - 1647810 - f 86 -12.3 -2.57211 | opp_overlap 1647810 1647809 1647813, overlap 1647809 1647812 1647838 ACGTCCCTGGATAAC GATTTCTAAGCTTCAGATGGAAT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATAAAATTAC TERM 2506 1647857 - 1647812 - f 73 -9.1 -2.82623 | opp_overlap 1647810 1647809 1647813, overlap 1647810 1647809 1647838 GTCCCTGGATAACGA TTTCTAAGCTTCAGATGGAAT AAAA ACTCCCTCTGAAGCCAAGAAC TCTGTTTATAAAATT CLD_3066 1647980 - 1648651 + | putative molybdate ABC transporter, ATP-binding protein CLD_3065 1648705 - 1649274 + | hypothetical protein TERM 2507 1649297 - 1649349 + F 83 -6 -5.44119 | gap 1, opp_overlap 1649314 1649324 ATTTTACTGTAGTTT TTTCAGTGGCTATATGATTTAATAG AAGA TTAA-AAATCATATAATCACTGAAA TTTTTTTGAAATAAA TERM 2508 1650457 - 1650441 - g 76 -9.5 -3.13788 | opp_overlap 1650437, overlap 1650439 1650432 ACGGAATTTAATATA TCCTTAG AAA CTAAGGA AAAATTATATAAAGA CLD_3064 1649622 - 1650545 + | patatin-like phospholipase family protein TERM 2509 1650686 - 1650705 + F 72 -7.8 -3.53012 | overlap 1650681 1650699 GAGTTCTTGGCTTCA GAGGGAGT TTTT ACTCCCAC TTTGGAGAAGAGGGA TERM 2510 1650699 - 1650721 + F 71 -8.4 -3.02144 | overlap 1650686 CAGAGGGAGTTTTTA CTCCCACTTT GGA GAAGAGGGAG TATTAGAGCGGATAG CLD_3063 1650845 - 1651000 + | hypothetical protein CLD_3062 1651291 - 1652343 + | putative methylcobalamin:coenzyme M methyltransferase CLD_3061 1652391 - 1653788 + | Na+/H+ antiporter family protein TERM 2511 1653835 - 1653800 - f 73 -7.7 -3.70478 | ATAAATTGATTTAAA GGACAAACTCATGAA TAAATT TTTATGTGTTTGTCC TCATACCCTTATTTT TERM 2512 1654093 - 1654079 - g 78 -10 -3.15236 | TAAAGTTATAGCTAA GGGGAA TCT TTCCCC TAAAACAAAAGATGA TERM 2513 1655532 - 1655516 - g 80 -8.7 -3.73072 | AACTTTTGTAGGAAA CTCCTCC ATA GAAGGAG CAAGATTATCTTTAC CLD_3060 1653930 - 1655660 + | iron-sulfur cluster-binding protein TERM 2514 1656289 - 1656270 - g 72 -2.8 -5.46657 | opp_overlap 1656270 GAGTGCAATAAAAAA GCCAGTAT AAAA ACATTGGC CTTTGAAGAATTTAA CLD_3059 1655748 - 1656677 + | CobW/P47K family protein CLD_3058 1656700 - 1657572 + | putative methylcobalamin:coenzyme M methyltransferase mtbC 1657598 - 1658260 + | dimethylamine corrinoid protein CLD_3056 1658345 - 1659367 + | putative methylcobalamin:coenzyme M methyltransferase TERM 2515 1659806 - 1659793 - f 75 -3.9 -5.49729 | opp_overlap 1659793 AAGGACTTAAAAAAA TTTTC GATA GAAAA TTAATGCGGTATCAT CLD_3055 1660314 - 1661384 + | putative methylcobalamin:coenzyme M methyltransferase CLD_3054 1661407 - 1662369 + | methionine ABC transporter ATP-binding protein TERM 2516 1662679 - 1662649 - g 82 -7.7 -4.51378 | opp_overlap 1662657 ATCTATAGGAGAAAA TGCAGCCATAGTT CCTTT AACTATAGCTTCA GCACCTTTTATAGCT CLD_3053 1662371 - 1663027 + | methionine ABC transporter permease TERM 2517 1663087 - 1663053 - f 85 -6 -5.47821 | opp_overlap 1663061, overlap 1663043 ATCTATTTAAAAAAA TTTAAAGCTATAGTTA ACT TAACTATATTTTTAAA TAAATATATACAATA TERM 2518 1663061 - 1663079 + F 83 -7.6 -4.67755 | opp_overlap 1663053 AAAAAAATTTAAAGC TATAGTTA ACT TAACTATA TTTTTAAATAAATAT CLD_3052 1663171 - 1663989 + | NLPA family lipoprotein TERM 2519 1664024 - 1664076 + T 73 -4.6 -5.11063 | gap 2, opp_overlap 1664035, overlap 1664032 1664035 TCACAATTCCTATTG TTAAATACAAAGATACCTCTAAACTG TTA TAGTTTGGAGGTATCTTA-T-TTTAG TTTTTATTCAATCCT TERM 2520 1664032 - 1664070 + T 100 -13.4 -4.86293 | opp_overlap 1664035, overlap 1664024 1664035 CCTATTGTTAAATAC AAAGATACCTCTAAACTG TTA TAGTTTGGAGGTATCTTA TTTTAGTTTTTATTC TERM 2521 1664067 - 1664035 - T 100 -12.2 -4.33258 | opp_overlap 1664032 1664024 1664035 ATTGTTAAATACAAA GATACCTCTAAACT GTTAT AGTTTGGAGGTATC TTATTTTAGTTTTTA TERM 2522 1664035 - 1664067 + T 100 -15.1 -4.47007 | opp_overlap 1664035, overlap 1664032 1664024 ATTGTTAAATACAAA GATACCTCTAAACTG TTA TAGTTTGGAGGTATC TTATTTTAGTTTTTA CLD_3051 1664649 - 1664080 - | MORN repeat-containing protein TERM 2523 1664823 - 1664839 + H 81 -5.3 -5.2894 | opp_overlap 1664823 1664832 1664834, overlap 1664827 ATAGATTTTATTAAT TTTTTAT AAT ATAAAAA TTTTATTTTATATTT TERM 2524 1664827 - 1664851 + H 86 -4.5 -5.94214 | opp_overlap 1664823 1664832 1664834, overlap 1664823 ATTTTATTAATTTTT TATAATATAAA AAT TTTATTTTATA TTTTTTTGTTATATT TERM 2525 1665680 - 1665700 + G 75 -4.7 -5.08824 | opp_overlap 1665682, overlap 1665682 TTTTGATGGAATTCA AATTCATGG AGC CCATGGATA TTTTTTAAGTAGAAC TERM 2526 1665682 - 1665698 + G 75 -7.3 -4.17608 | opp_overlap 1665682, overlap 1665680 TTGATGGAATTCAAA TTCATGG AGC CCATGGA TATTTTTTAAGTAGA CLD_3050 1665228 - 1666247 + | oxidoreductase, FAD/FMN-binding TERM 2527 1666297 - 1666250 - f 80 -8.1 -4.28656 | gap 1, opp_overlap 1666259, overlap 1666254 ATTTAATATGTAAAA TAAATATAAGGATGGGGAATGT AAGTA AAATTCTCCATCCTT-TATTTA TGTAAACATTATTTT TERM 2528 1666259 - 1666289 + F 89 -9.1 -4.62441 | opp_overlap 1666254 1666250 GTAAAATAAATATAA GGATGGGGAATGT AAGTA AAATTCTCCATCC TTTATTTATGTAAAC asnA 1666576 - 1667598 + | aspartate--ammonia ligase TERM 2529 1667634 - 1667691 + T 87 -10.2 -3.34705 | opp_overlap 1667634, overlap 1667646 GTAATTATTAAATGA TTCTAAGGTTTAGATGGAGTTCTATT ATGAAA AATAGCTCTCTATCTTAATCTTAGAA TCATTTTTATAATAT CLD_3048 1669271 - 1667706 - | oxidoreductase, FAD dependent TERM 2530 1668880 - 1668894 + g 72 -8.6 -2.91735 | ATATAAGCCGGGAGT CTGTGA AAA TCACAG TCTATAGAATATTCA CLD_3047 1669629 - 1671488 + | DNA topoisomerase CLD_3046 1671515 - 1673428 + | MutS domain-containing protein TERM 2531 1673481 - 1673535 + F 100 -9.8 -5.29782 | gap 1, opp_overlap 1673484 1673489, overlap 1673482 1673489 AGATTTAATCTTAAT G-TAGAAAATACACTTCATAAGTTT AGTAGG ATGCTTATGAAGTGTATTTTTTATC TTTTTTATAAATATA TERM 2532 1673482 - 1673533 + F 100 -13.5 -4.2748 | opp_overlap 1673484 1673489, overlap 1673481 1673489 GATTTAATCTTAATG TAGAAAATACACTTCATAAGTTT AGTAGG ATGCTTATGAAGTGTATTTTTTA TCTTTTTTATAAATA TERM 2533 1673526 - 1673489 - f 77 -7.3 -4.4715 | opp_overlap 1673482 1673481 1673489, overlap 1673484 TCTTAATGTAGAAAA TACACTTCATAAG TTTAGTAGGATG CTTATGAAGTGTA TTTTTTATCTTTTTT TERM 2534 1673489 - 1673526 + F 100 -9.4 -5.72118 | opp_overlap 1673489 1673484, overlap 1673482 1673481 TCTTAATGTAGAAAA TACACTTCATAAGTTT AGTAGG ATGCTTATGAAGTGTA TTTTTTATCTTTTTT CLD_3045 1673745 - 1674881 + | aldo/keto reductase family oxidoreductase TERM 2535 1674873 - 1674908 + T 100 -19.4 -4.66388 | opp_overlap 1674869, overlap 1674862 GTAGTTAAAACTTTT GAACCTTAACAAATTG TTTG CAATTTGTTAAGGTTC TTTCTTTGTAATTTT CLD_3044 1675430 - 1674939 - | hypothetical protein TERM 2536 1675623 - 1675608 - H 73 -7.6 -3.77789 | overlap 1675606 ATTGAAAAAAATATA TTGACC CCAT GGTCAA CGGGTGATAATATAT CLD_3043 1675667 - 1676365 + | peptide ABC transporter ATP-binding protein TERM 2537 1676907 - 1676885 - g 100 -9.2 -5.47218 | opp_overlap 1676875, overlap 1676887 TGGGATGCAAAAAAA TTTGGCATAG CTT CTATGCCAGA GGAAAATATGAAAAA TERM 2538 1676905 - 1676887 - g 90 -11.8 -2.91842 | opp_overlap 1676875, overlap 1676885 GGATGCAAAAAAATT TGGCATAG CTT CTATGCCA GAGGAAAATATGAAA TERM 2539 1678338 - 1678352 + G 76 -8.6 -3.45033 | opp_overlap 1678338 1678340, overlap 1678349 CCCTAATACTAGACA CAGGAA AAA TTCCTG TTATAATAGGTTATC TERM 2540 1678352 - 1678338 - g 72 -8.6 -3.00923 | opp_overlap 1678338 1678349, overlap 1678340 CCCTAATACTAGACA CAGGAA AAA TTCCTG TTATAATAGGTTATC CLD_3042 1676366 - 1678576 + | efflux ABC transporter, permease protein CLD_3041 1678588 - 1679211 + | TetR family transcriptional regulator TERM 2541 1679296 - 1679337 + F 70 -4.1 -5.10933 | gap 1 AAATGAGTTAGTTTA TAGATTTAATTTTTTATACT TGT GGTGTTAAA-ATTAAATCTA TTTTATTTTGAGTGA CLD_3040 1679572 - 1680123 + | hypothetical protein TERM 2542 1680836 - 1680805 - g 83 -7.6 -4.62471 | AATTTATATATAAAA CCTAAAAATTTA TTTGTAGC TAAATTTTTAGG AAATCCACCTATAAA CLD_3039 1680136 - 1681233 + | carbohydrate ABC transporter ATP-binding protein CLD_3038 1681226 - 1682119 + | carbohydrate ABC transporter permease TERM 2543 1682114 - 1682104 - f 81 -5.4 -5.35815 | opp_overlap 1682104 TATAGGAAAGAAAAA GGTA GAA TACC ATTAATTTACATAGA CLD_3037 1682154 - 1682978 + | carbohydrate ABC transporter permease CLD_3036 1683024 - 1684385 + | carbohydrate ABC transporter periplasmic-binding protein ldh 1685564 - 1684608 - | L-lactate dehydrogenase CLD_3034 1686085 - 1686795 + | GntR family transcriptional regulator TERM 2544 1686797 - 1686817 + T 75 -5.5 -5.0925 | AAATCACTACTTAAA GTACTATGT ATT ATATAGTGC TTTTTCATTTTAAAG CLD_3033 1687535 - 1687047 - | redox family protein TERM 2545 1688339 - 1688355 + G 79 -7.3 -4.44667 | opp_overlap 1688339, overlap 1688340 CCAACTATCGCAATA TTTGCAG CAC CTGCAAG TTTATTATTAGCAGG TERM 2546 1688340 - 1688354 + G 74 -8.6 -3.26318 | opp_overlap 1688339, overlap 1688339 CAACTATCGCAATAT TTGCAG CAC CTGCAA GTTTATTATTAGCAG CLD_3032 1687769 - 1688716 + | C4-dicarboxylate transporter/malic acid transport protein CLD_3031 1688937 - 1688788 - | hypothetical protein TERM 2547 1688908 - 1688850 - G 74 -6.3 -4.41348 | gap 1, opp_overlap 1688858 1688859, overlap 1688851 1688856 1688857 TTGGTGCGAAAGAAA GCATAACTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGTTTTTTG- CTATCTTTTTTATAA TERM 2548 1688908 - 1688851 - G 100 -12.3 -3.24488 | opp_overlap 1688858 1688859, overlap 1688850 1688856 1688857 TGGTGCGAAAGAAAG CATAACTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGTTTTTTG CTATCTTTTTTATAA TERM 2549 1688901 - 1688856 - G 95 -11.6 -3.72242 | gap 2, opp_overlap 1688858 1688859, overlap 1688850 1688851 1688857 CGAAAGAAAGCATAA CTTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAA--G TTTTTTGCTATCTTT TERM 2550 1688902 - 1688857 - G 100 -14.3 -2.82261 | opp_overlap 1688858 1688859, overlap 1688856 1688850 1688851 GAAAGAAAGCATAAC TTTTACCCATTCCCTTTTAAA TCCT CTTAAAAGGGAATGGGTAAGT TTTTTGCTATCTTTT TERM 2551 1688858 - 1688901 + g 100 -19.3 -5.28755 | opp_overlap 1688856 1688857 1688850 1688851, overlap 1688859 AAAGAAAGCATAACT TTTACCCATTCCCTTTTAA ATCCTC TTAAAAGGGAATGGGTAAG TTTTTTGCTATCTTT TERM 2552 1688859 - 1688900 + g 100 -20.6 -3.74813 | opp_overlap 1688856 1688857 1688850 1688851, overlap 1688858 AAGAAAGCATAACTT TTACCCATTCCCTTTTAA ATCCTC TTAAAAGGGAATGGGTAA GTTTTTTGCTATCTT TERM 2553 1688972 - 1688940 - H 73 -7.9 -3.78069 | opp_overlap 1688942, overlap 1688938 1688935 1688942 1688971 TAAAAAATAACAATA GATATCTTAGGAAAA ATT TTATCCTAAGATATT TTGATGATGTCAAAA TERM 2554 1688942 - 1688970 + H 95 -10.5 -4.33274 | opp_overlap 1688940 1688938 1688935 1688942 AAAAATAACAATAGA TATCTTAGGAAAA ATT TTATCCTAAGATA TTTTGATGATGTCAA TERM 2555 1688970 - 1688942 - H 90 -10.5 -3.42301 | opp_overlap 1688942, overlap 1688940 1688938 1688935 AAAAATAACAATAGA TATCTTAGGAAAA ATT TTATCCTAAGATA TTTTGATGATGTCAA TERM 2556 1689047 - 1689060 + H 73 -2.5 -5.63504 | TAAAACTTTGTTAAT TTTAT TTCC ATAAA TTTTTTTGTACACTT TERM 2557 1691110 - 1691090 - g 70 -8.3 -3.07192 | AATGCTGTTAATATA TCCATCTCC TTT GGATATGGA ACTAAGAAGAAAGAA CLD_3030 1689566 - 1691764 + | putative sensory box-containing diguanylate cyclase CLD_3029 1691872 - 1692219 + | hypothetical protein TERM 2558 1692310 - 1692347 + F 70 -3.6 -5.1971 | opp_overlap 1692320, overlap 1692312 1692320 ACTAAGCAGATAAAA GCTAGAAAATTAGAAA TATAAC TATTTAAATTTCTAGC TTTTTAATTTTTAAT TERM 2559 1692411 - 1692397 - f 71 -5.8 -4.70887 | opp_overlap 1692397 TGAGCAATAAATAAA TGTATT CAT AATACA TTTGAGTAGTATTGT TERM 2560 1693494 - 1693475 - g 78 -6.4 -4.82901 | TCTTTTGTAGAAAAA GCAGAGCT TACA AGATCTGC AAATAGTATAGGTCT CLD_3028 1692587 - 1694659 + | methyl-accepting chemotaxis protein TERM 2561 1694686 - 1694661 - f 81 -7.9 -4.47679 | opp_overlap 1694657, overlap 1694657 AATTCAAAATATAAA TAATTTATTAT AATT ATAATAAATTA AACTGTGGTGGCGTT TERM 2562 1694717 - 1694748 + F 100 -12.6 -5.90231 | gap 1, opp_overlap 1694724 1694725, overlap 1694706 TATAGAAACCTTTGG CATGAAAGTTTCCTT TTT AAGGAA-CTTTCATG TTTTTTTATATTTAT TERM 2563 1694819 - 1694844 + F 74 -6.3 -4.66537 | opp_overlap 1694825, overlap 1694825 AAATATTACAATATA AAAAAAGGTAA TATA TTACCTTTTTA TTTTCTATTAGGAGG TERM 2564 1694838 - 1694825 - f 90 -5.3 -5.84432 | opp_overlap 1694825 1694819 TACAATATAAAAAAA GGTAA TATA TTACC TTTTTATTTTCTATT TERM 2565 1694825 - 1694838 + F 82 -5.3 -5.60556 | opp_overlap 1694825, overlap 1694819 TACAATATAAAAAAA GGTAA TATA TTACC TTTTTATTTTCTATT CLD_3027 1694866 - 1695333 + | MarR family transcriptional regulator CLD_3026 1695359 - 1695901 + | hypothetical protein CLD_3025 1696403 - 1696050 - | putative transcriptional regulator CLD_3024 1696798 - 1697163 + | glyoxalase family protein ogt 1697192 - 1697662 + | methylated-DNA-[protein]-cysteine S-methyltransferase CLD_3022 1697689 - 1698906 + | AraC family transcriptional regulator TERM 2566 1698990 - 1698946 - f 88 -8.1 -4.8048 | opp_overlap 1698952, overlap 1698947 1698952 CGTTTACACTAAAAA GTAAAAGCAGTATGATTAATT TGT AGTCAATCATACTGCTTTTTA TTTTAAGATAATATT TERM 2567 1698989 - 1698947 - f 95 -11.6 -3.47806 | opp_overlap 1698952, overlap 1698946 1698952 GTTTACACTAAAAAG TAAAAGCAGTATGATTAATT TGT AGTCAATCATACTGCTTTTT ATTTTAAGATAATAT TERM 2568 1698984 - 1698952 - f 100 -11.5 -4.80167 | opp_overlap 1698952, overlap 1698947 1698946 CACTAAAAAGTAAAA GCAGTATGATTAATT TGT AGTCAATCATACTGC TTTTTATTTTAAGAT TERM 2569 1698952 - 1698984 + F 100 -11.5 -5.46706 | opp_overlap 1698952 1698947 1698946 CACTAAAAAGTAAAA GCAGTATGATTAATT TGT AGTCAATCATACTGC TTTTTATTTTAAGAT CLD_3021 1699071 - 1700279 + | hypothetical protein CLD_3020 1700304 - 1701134 + | hypothetical protein TERM 2570 1701180 - 1701230 + F 100 -16.6 -2.84098 | opp_overlap 1701186, overlap 1701186 TTTTTAGCATGATTT TTAAAACACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTGTTTTTA TAATTAATTAAGGCC TERM 2571 1701224 - 1701186 - f 100 -15.6 -4.12188 | opp_overlap 1701180 1701186 GCATGATTTTTAAAA CACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTG TTTTTATAATTAATT TERM 2572 1701186 - 1701224 + F 100 -15.6 -5.00765 | opp_overlap 1701186, overlap 1701180 GCATGATTTTTAAAA CACAATTCCAATGGAAAT TTT ATTTTCACTGGAATTGTG TTTTTATAATTAATT CLD_3019 1701524 - 1702636 + | putative DNA-binding protein TERM 2573 1702886 - 1702913 + F 100 -8.5 -5.68039 | opp_overlap 1702886 1702887, overlap 1702903 AGAAAGGATTAAATA CCTGTGGGACA GTAAAA TGTTCTACAGG TTTTTTTATAAATTT TERM 2574 1703123 - 1703110 - g 82 -5.3 -5.44119 | TGTAGTTGAAAAAAA GGAAA GCTT TTTCC ACAAAATTTTGAATG TERM 2575 1703312 - 1703277 - g 71 -5.6 -4.36127 | TTCAAGAATGGAAAA CTGACAAAACTTTGAA TGCA TTAAAAGATTTATCAG CTCCTCATATTAAAG TERM 2576 1703851 - 1703869 + G 72 -4.6 -4.87665 | overlap 1703853 GATTCCAGAAGAATT TCCAGTTA TTC TAACTGTA TTTTTATCAATGGGG TERM 2577 1703853 - 1703867 + G 75 -7.2 -4.06182 | overlap 1703851 TTCCAGAAGAATTTC CAGTTA TTC TAACTG TATTTTTATCAATGG TERM 2578 1705301 - 1705311 + G 70 -5.4 -4.55491 | GTCCAAGTAAATACT TCAG ATT CTGA TTTTGTAGTTAAATC CLD_3018 1703009 - 1705543 + | hypothetical protein CLD_3017 1705600 - 1706469 + | cation efflux family protein TERM 2579 1706804 - 1706823 + F 100 -8.6 -5.75538 | opp_overlap 1706802 1706803 ATAAAAACATGAATT GTGGTACA ACTA TGTGCCAC TTTTTATTTTTTAAA CLD_3016 1706955 - 1708358 + | amino acid/peptide transporter CLD_3015 1708795 - 1709157 + | putative iron-dependent repressor TERM 2580 1709505 - 1709492 - g 72 -6.7 -4.10007 | opp_overlap 1709491 AGAATTCCTTTAAAA GATGC AAGT GCATC AATTTTAGCTCAAAT CLD_3014 1709252 - 1709659 + | hypothetical protein CLD_3013 1710040 - 1710894 + | HDIG domain-containing protein CLD_3012 1711004 - 1711189 + | hypothetical protein TERM 2581 1711281 - 1711246 - T 73 -7.8 -3.827 | opp_overlap 1711241 1711246, overlap 1711241 AATAAGTAATTTAAA TAGTCCTAGGAA GAAAGATTATAA TTCCTAGGACTA TTTTATATTCTAAAG TERM 2582 1711246 - 1711281 + T 86 -7.8 -4.73682 | opp_overlap 1711246 1711241, overlap 1711241 AATAAGTAATTTAAA TAGTCCTAGGAA GAAAGATTATAA TTCCTAGGACTA TTTTATATTCTAAAG CLD_3011 1714007 - 1711371 - | cation-transporting ATPase, P-type TERM 2583 1712855 - 1712866 + g 80 -2.2 -5.70829 | CAAAAGCTATTTCAG TGGG GTCA CCTA TTTTTTTATCCTGTT TERM 2584 1714133 - 1714147 + H 73 -4.4 -5.1848 | AAAGTTATATATTAT TAAAAA TTA TTTTTA TTTTTTAGCTTGGTT TERM 2585 1714328 - 1714283 - H 100 -18.2 -5.68438 | opp_overlap 1714285 1714294 1714297 CTAGCAAATAAAAAA GACTTTTAATATAATTCTTT TTATTT AAAGAATTATATTAAAAGTC TTGCAACCAAACTTT TERM 2586 1714285 - 1714326 + H 100 -15 -3.01791 | opp_overlap 1714283, overlap 1714294 1714297 AGCAAATAAAAAAGA CTTTTAATATAATTCTTT TTATTT AAAGAATTATATTAAAAG TCTTGCAACCAAACT CLD_3010 1714931 - 1715245 + | glyoxalase family protein TERM 2587 1715266 - 1715298 + T 71 -6.4 -4.15657 | opp_overlap 1715267, overlap 1715267 1715269 GCTTATTTGCAATTA AGAGCATTTAATCT TAGGT GGATTAAGTGCTCC TTTCTATAATTATAC TERM 2588 1715267 - 1715297 + T 82 -9.9 -3.08671 | opp_overlap 1715267, overlap 1715266 1715269 CTTATTTGCAATTAA GAGCATTTAATCT TAGGT GGATTAAGTGCTC CTTTCTATAATTATA CLD_3009 1715906 - 1715466 - | hypothetical protein CLD_3008 1716345 - 1715920 - | hypothetical protein CLD_3007 1716461 - 1717153 + | cyclic nucleotide-binding domain-containing protein TERM 2589 1717204 - 1717219 + F 100 -7.6 -5.93809 | opp_overlap 1717191 1717204 AATCAACCTTTAAAA TCAACC GAAA GGTTGA TTTTTTTTGTGAAAG TERM 2590 1717219 - 1717204 - f 77 -7.6 -4.15508 | opp_overlap 1717204, overlap 1717191 AATCAACCTTTAAAA TCAACC GAAA GGTTGA TTTTTTTTGTGAAAG TERM 2591 1717912 - 1717892 - g 72 -6.9 -4.0847 | opp_overlap 1717895, overlap 1717895 CAGACAGAATAATAA TAATGGATC ATG GAACCATTA TAGCTGAAGGAACCA CLD_3006 1717273 - 1718211 + | ABC transporter, ATP-binding protein CLD_3005 1718222 - 1718965 + | ABC transporter, permease protein CLD_3004 1718965 - 1719954 + | ABC transporter, permease protein TERM 2592 1720129 - 1720111 - g 71 -7.5 -3.79506 | overlap 1720103 1720099 AAGTAAACTTAATAA GGACTAA GCTTA TTAGTCC AATGCCAAGAAAAAA TERM 2593 1720562 - 1720572 + G 72 -2.6 -5.47218 | GTATTCATCTTCTAA TATA CAT TATA TTTTTTTAACTAGAG TERM 2594 1722114 - 1722089 - g 72 -4.9 -4.95302 | opp_overlap 1722092, overlap 1722092 TGAAAGACAACAAAA GAATTCTAATA CTTA TATTAGAATTG ATGAAAAGATTACTT TERM 2595 1722111 - 1722092 - g 78 -6.6 -4.53142 | opp_overlap 1722092, overlap 1722089 AAGACAACAAAAGAA TTCTAATA CTTA TATTAGAA TTGATGAAAAGATTA TERM 2596 1722547 - 1722525 - g 87 -10.8 -3.42283 | overlap 1722523 GAAGTGATGGAAATA TTATTTGAAG GAT CTTCAAATAA GCAGATTGGAAAAAG CLD_3003 1720086 - 1722683 + | LuxR family transcriptional regulator TERM 2597 1722715 - 1722663 - T 70 -2.9 -5.59879 | opp_overlap 1722666 1722678 1722712, overlap 1722656 1722669 1722678 GAGAAATATAAAAAA TTTAAAGCCATAAAATATTAATACT TAA AGTAGTAATATTTTATGGCAACTAG CTTAGTATATTAATA TERM 2598 1722709 - 1722669 - T 100 -17.3 -4.08285 | opp_overlap 1722666 1722678, overlap 1722663 1722678 TATAAAAAATTTAAA GCCATAAAATATTAATACT TAA AGTAGTAATATTTTATGGC AACTAGCTTAGTATA TERM 2599 1722712 - 1722739 + T 100 -10.8 -5.63504 | opp_overlap 1722663 1722715 AATATTTTATGGCAA CTAGCTTAGTAT ATTA ATATTAAGCTAG TTTTTTTATAAAATT CLD_3002 1723485 - 1722763 - | transcription activator effector binding domain-containing protein CLD_3001 1724487 - 1723543 - | hypothetical protein TERM 2600 1724742 - 1724757 + H 88 -4.7 -5.84381 | AAAACTAGGACGTAG CTACC GCCTTA GGTAG TTTTTTTGTTGATGG TERM 2601 1724771 - 1724785 + H 100 -10 -5.63517 | AGTTTTTTTGTTGAT GGGCAT TTA ATGCCC TTTTTTATTTGCAAA TERM 2602 1724788 - 1724816 + H 77 -3.3 -5.80951 | overlap 1724790 GCATTTAATGCCCTT TTTTATTTGCAAA AAA TTTACAAATAGGA TTTTTTGTTTTAGGT TERM 2603 1725360 - 1725370 + G 78 -6.8 -4.62069 | opp_overlap 1725359 1725353 TTCTAACACTAAAGC CCTC ATT GAGG TTTTTAAGCTAAAGG TERM 2604 1725576 - 1725590 + G 75 -7.2 -4.05033 | opp_overlap 1725571 AGATAATAAGGTTAA TGGTTT TGA AAACCA TTTATATCAGGTGAG CLD_3000 1725112 - 1726107 + | putative 2-hydroxyglutaryl-CoA dehydratase subunit hgdC 1726224 - 1726985 + | 2-hydroxyglutaryl-CoA dehydratase component A CLD_2998 1727003 - 1727434 + | putative 6-pyruvoyl tetrahydropterin synthase CLD_2997 1727436 - 1728101 + | radical SAM domain-containing protein folE 1728105 - 1728695 + | GTP cyclohydrolase I CLD_2995 1728879 - 1729538 + | ExsB protein TERM 2605 1729555 - 1729573 + F 83 -3.9 -5.88565 | GTTAATTTAGGAGGA CTAGTAT GCTAA GTACTAG TTTTTTTATTGTGAA CLD_2994 1729832 - 1730650 + | CAAX amino terminal protease family protein TERM 2606 1731526 - 1731513 - g 70 -3.9 -5.0133 | GAGCCCTTGAAAAAA TAGAA GAAG TTCTA GATTCATTTAACAGA CLD_2993 1730798 - 1731742 + | methyl-accepting chemotaxis protein CLD_2992 1731917 - 1732669 + | hypothetical protein TERM 2607 1732751 - 1732774 + F 100 -11.1 -5.09225 | opp_overlap 1732748 1732753 AAAAGGAATTTATAG GACTAAGCC AACAGA GGCTTAGTC TTTTTTAGATAGAGT TERM 2608 1733323 - 1733337 + G 93 -5.8 -5.68039 | opp_overlap 1733322 AAAAAATCCAATCAT TAAGAT TTT ATCTTA TTTTTTTATGGATTT CLD_2991 1732991 - 1733410 + | hypothetical protein CLD_2990 1733432 - 1734370 + | putative deoxyribonucleoside regulator TERM 2609 1734568 - 1734525 - f 95 -11.4 -3.53031 | opp_overlap 1734521 1734519, overlap 1734521 TTTACTTTAAAGCAA TATTAGAACAAAAGAAAAAA CTAA TATTTACTTTTGTTCTAATA AGTGCTATTATTAGG deoC 1734662 - 1735300 + | deoxyribose-phosphate aldolase rbsK 1735643 - 1736554 + | ribokinase TERM 2610 1736631 - 1736606 - f 70 -4.7 -4.86385 | opp_overlap 1736608 1736624, overlap 1736608 ATTTTTAAAAACAAA GACTCCTATAC ATTA GTGTAGGAGTT TTCTATTTTATGGAA TERM 2611 1736608 - 1736629 + F 100 -9.5 -4.94487 | opp_overlap 1736606 1736608, overlap 1736624 TTTTAAAAACAAAGA CTCCTATAC ATTA GTGTAGGAG TTTTCTATTTTATGG TERM 2612 1736629 - 1736608 - f 73 -7.3 -4.04587 | opp_overlap 1736608 1736624, overlap 1736606 TTTTAAAAACAAAGA CTCCTATAC ATTA GTGTAGGAG TTTTCTATTTTATGG hisZ 1737011 - 1738279 + | ATP phosphoribosyltransferase, regulatory subunit TERM 2613 1738438 - 1738415 - g 74 -5.4 -4.87052 | GATAAAGGAAGAAAA CTCATTTTTA ATTG TGAAAATGAG GAATATAATATAGAG hisG 1738304 - 1738942 + | ATP phosphoribosyltransferase TERM 2614 1739909 - 1739895 - g 90 -7.2 -5.4492 | TATACAGATAAAAAA TCTTTC AAG GAAAGA AATAATACGTACATC hisD 1739020 - 1740324 + | histidinol dehydrogenase hisB 1740474 - 1741064 + | imidazoleglycerol-phosphate dehydratase hisH 1741192 - 1741797 + | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit hisA 1741794 - 1742522 + | phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase hisC 1742519 - 1743583 + | histidinol-phosphate aminotransferase hisF 1743779 - 1744540 + | imidazoleglycerol phosphate synthase, cyclase subunit hisI 1744686 - 1745018 + | phosphoribosyl-AMP cyclohydrolase TERM 2615 1745361 - 1745339 - g 72 -5 -4.79683 | AACTGATAAAAGAAA TATGTGAT TTAACCT ATCACATA ATGGTTTTAATGGTA hisE 1745146 - 1745478 + | phosphoribosyl-ATP pyrophosphohydrolase TERM 2616 1745826 - 1745842 + G 81 -2.9 -5.68438 | AGATTTTGTTTATGT GGAGCTT TTA GAGATCC TTTTTTGTTTAATAA CLD_2977 1745610 - 1746305 + | hypothetical protein CLD_2976 1746319 - 1746540 + | hypothetical protein CLD_2975 1746558 - 1747085 + | hypothetical protein TERM 2617 1747065 - 1747109 + T 100 -14.9 -5.06414 | opp_overlap 1747065 1747070 1747073 GTAGGTACGCTAATA TTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAA TTTTTATTAGCAGAA TERM 2618 1747109 - 1747065 - T 100 -14.9 -3.06492 | opp_overlap 1747065, overlap 1747070 1747073 GTAGGTACGCTAATA TTAAAGAAGTTTATATTAT AAAATAG ATAATATAAACTTCTTTAA TTTTTATTAGCAGAA TERM 2619 1747104 - 1747070 - T 95 -10.4 -3.93038 | opp_overlap 1747065, overlap 1747065 1747073 TACGCTAATATTAAA GAAGTTTATATTAT AAAATAG ATAATATAAACTTC TTTAATTTTTATTAG CLD_2974 1748006 - 1747116 - | LysR family transcriptional regulator TERM 2620 1749280 - 1749296 + G 77 -7.3 -4.31085 | TATGTTTTTTTTAAC CTGTGGT TTT ACTACAG TTTTAAGTTCCTATC CLD_2973 1748270 - 1749520 + | sodium:alanine symporter family protein CLD_2972 1749601 - 1751301 + | pyridine nucleotide-disulphide oxidoreductase family protein CLD_2971 1751454 - 1752710 + | hypothetical protein TERM 2621 1752793 - 1752832 + F 100 -12.6 -4.67038 | gap 1, opp_overlap 1752793 ATATTATAAAAGAAA TCACTAAAAATCAACTATA GAC TA-AGTTGGTTTTTAGTGA TTTTAATTTTAGAAA TERM 2622 1752832 - 1752793 - f 100 -10.4 -4.81357 | gap 1, opp_overlap 1752793 ATATTATAAAAGAAA TCACTAAAAATCAACTATA GAC TA-AGTTGGTTTTTAGTGA TTTTAATTTTAGAAA CLD_2970 1753017 - 1753724 + | antibiotic ABC transporter, ATP-binding protein CLD_2969 1753727 - 1754458 + | antibiotic ABC transporter, permease protein CLD_2968 1754461 - 1755204 + | antibiotic ABC transporter, permease protein CLD_2967 1755321 - 1755980 + | putative antibiotic transporter response regulator CLD_2966 1755971 - 1757350 + | putative antibiotic transporter sensor protein TERM 2623 1757465 - 1757418 - f 100 -8.8 -5.00846 | opp_overlap 1757422 1757432, overlap 1757422 TAAATATTATAAAAA TAAATCACTAAAAATTAGTTAG ATTT CTGATTAATTTTTAGTGATTTT AATTGGGAAAATAAT TERM 2624 1757461 - 1757422 - f 100 -9.6 -4.98911 | opp_overlap 1757422 1757432, overlap 1757418 TATTATAAAAATAAA TCACTAAAAATTAGTTAG ATTT CTGATTAATTTTTAGTGA TTTTAATTGGGAAAA TERM 2625 1757422 - 1757461 + F 100 -14 -4.4078 | opp_overlap 1757422 1757418, overlap 1757432 TATTATAAAAATAAA TCACTAAAAATTAGTTAG ATTT CTGATTAATTTTTAGTGA TTTTAATTGGGAAAA TERM 2626 1757670 - 1757657 - f 81 -5.3 -5.30448 | opp_overlap 1757657 AAACAAATAGAAAAA TGCAT AATT ATGCA TTTGTATACAATTAG arcA 1757914 - 1759140 + | arginine deiminase TERM 2627 1759146 - 1759199 + F 100 -12.4 -4.58424 | gap 1, opp_overlap 1759146 1759177 TTTAAGATAACCCAA TTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAA TTTTGTATAATAATC TERM 2628 1759199 - 1759146 - f 93 -12.4 -3.29147 | gap 1, opp_overlap 1759146, overlap 1759177 TTTAAGATAACCCAA TTATTTAGAT-ATGTTAACATAATT TATAT AATTATGTTAACATAATCTATATAA TTTTGTATAATAATC TERM 2629 1760450 - 1760468 + G 72 -9 -2.99471 | opp_overlap 1760462 TAGCAATCTTAGCTT CCATATAT ACA ATATATGG TATATATGCAGGTGG arcD 1759243 - 1760661 + | arginine/ornithine antiporter TERM 2630 1760882 - 1760846 - T 72 -6 -4.55004 | opp_overlap 1760854, overlap 1760854 AAGAGAAAATATAAA TAATAAAAGGATAGCC TTAGT GGTTATCCTTTTTCTA CATATACATTATGTA TERM 2631 1760854 - 1760874 + T 86 -7.6 -4.89852 | opp_overlap 1760854 1760846 ATATAAATAATAAAA GGATAGCC TTAGT GGTTATCC TTTTTCTACATATAC TERM 2632 1760874 - 1760854 - T 75 -5.4 -5.06472 | opp_overlap 1760854, overlap 1760846 ATATAAATAATAAAA GGATAGCC TTAGT GGTTATCC TTTTTCTACATATAC CLD_2963 1761530 - 1760880 - | hemolysin III CLD_2962 1761901 - 1762497 + | hypothetical protein CLD_2961 1762866 - 1763426 + | HD domain-containing protein CLD_2960 1763466 - 1763609 + | hypothetical protein TERM 2633 1763933 - 1763898 - T 90 -10.6 -3.4678 | opp_overlap 1763882 1763899, overlap 1763899 1763923 ATTTTTATATTAGAA TGGACAGCTTAATATA AAAA TATATTAGGCTGTCCT ATATTAAATAAAATT TERM 2634 1763932 - 1763899 - T 100 -14.1 -2.67747 | opp_overlap 1763882 1763899, overlap 1763898 1763923 TTTTTATATTAGAAT GGACAGCTTAATATA AAAA TATATTAGGCTGTCC TATATTAAATAAAAT TERM 2635 1763899 - 1763932 + T 100 -16.3 -3.10522 | opp_overlap 1763899 1763898 1763923, overlap 1763882 TTTTTATATTAGAAT GGACAGCTTAATATA AAAA TATATTAGGCTGTCC TATATTAAATAAAAT CLD_2959 1764291 - 1763947 - | hypothetical protein CLD_2958 1764559 - 1767852 + | SNF2 family helicase CLD_2957 1768042 - 1768863 + | RelA/SpoT domain-containing protein TERM 2636 1769135 - 1769113 - f 74 -5 -5.18726 | CTGTGAGAACAAAAA TTTTTAATTG CGT CAATTAAGAA CTACTAAAGTGTATT CLD_2956 1769282 - 1769737 + | hypothetical protein CLD_2955 1769984 - 1770973 + | AraC family transcriptional regulator TERM 2637 1770994 - 1771018 + F 82 -2.2 -6.17033 | AATAAATTATAAAAA TGTTCTAAAG TGATT TTTTGGAGCA TTTTTTATTTTTTTT TERM 2638 1771563 - 1771579 + G 81 -8.1 -4.09627 | GCAGCTATTGTGACT CCTATAA TAA TTATAGG TTATCTTTTATATTT TERM 2639 1771901 - 1771925 + G 78 -6.6 -4.56775 | opp_overlap 1771906, overlap 1771903 TTCAGGACTTTTATT TATAATTCCT ATTGG AGGAATTATG TTTTTAAAAGGGAAT TERM 2640 1771903 - 1771923 + G 71 -7 -3.90048 | opp_overlap 1771906, overlap 1771901 CAGGACTTTTATTTA TAATTCCT ATTGG AGGAATTA TGTTTTTAAAAGGGA TERM 2641 1772348 - 1772360 + G 72 -6.3 -4.33258 | opp_overlap 1772343 AATGGAAGAGCTTAT GGATA AGG TATCC TTTGTATTTCAAGAT CLD_2954 1771122 - 1772885 + | ABC transporter ATP-binding/permease protein CLD_2953 1772879 - 1774603 + | ABC transporter ATP-binding/permease protein TERM 2642 1774642 - 1774673 + F 93 -7.5 -5.2166 | opp_overlap 1774642, overlap 1774647 AAACAAGGAGAAGAA TAAAAGGATAGTC TTAACT GGCTATTCTTTTA TTTTTTAAATTATTA TERM 2643 1774760 - 1774728 - f 88 -5.2 -5.89921 | ATTATAATAAAAAAA TAATTATATAAATT TTAGC AATTCATATAATCA TCAGTAGCTTAATAA TERM 2644 1775740 - 1775723 - g 71 -5.5 -4.3902 | ATTAGAAAAAGTAAA GCCAACA GCAG TGGTGGC AATGGATGACTTGTT CLD_2952 1774995 - 1775996 + | LacI family transcription regulator TERM 2645 1777179 - 1777169 - g 76 -5.4 -5.093 | TGTAAAATAACAAAA GCAA AGC TTGC AGGAAAAGCGGGGGT CLD_2951 1776290 - 1777237 + | putative glucokinase TERM 2646 1778513 - 1778503 - g 74 -5.4 -4.95758 | overlap 1778504 AGGAGATGATAAAAA CTTC TGG GAAG AAAGTTCAAAAGCCT CLD_2950 1777487 - 1779151 + | glycosy hydrolase family protein CLD_2949 1779193 - 1780851 + | PTS system, glucose/glucoside family, IIBC component CLD_2948 1780855 - 1781646 + | endonuclease/exonuclease/phosphatase family protein TERM 2647 1781655 - 1781711 + F 95 -12.6 -3.71792 | opp_overlap 1781656 1781658, overlap 1781657 1781658 AATTTAAAAAAAGTA AGAGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCATA TTAATTTTCAGTTAG TERM 2648 1781710 - 1781656 - f 100 -11.7 -4.04789 | opp_overlap 1781655 1781657 1781658, overlap 1781658 ATTTAAAAAAAGTAA GAGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCAT ATTAATTTTCAGTTA TERM 2649 1781657 - 1781709 + F 100 -17.4 -3.43033 | opp_overlap 1781656 1781658, overlap 1781655 1781658 TTTAAAAAAAGTAAG AGGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCCA TATTAATTTTCAGTT TERM 2650 1781708 - 1781658 - f 100 -18.7 -3.59495 | opp_overlap 1781657 1781655 1781658, overlap 1781656 TTAAAAAAAGTAAGA GGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCC ATATTAATTTTCAGT TERM 2651 1781658 - 1781708 + F 100 -20.9 -2.64735 | opp_overlap 1781658 1781656, overlap 1781657 1781655 TTAAAAAAAGTAAGA GGACAGTTCACAAATTTTAAGTT ATTTG AACTTAAAGTATGTGAACTGTCC ATATTAATTTTCAGT TERM 2652 1782184 - 1782166 - g 74 -3.2 -5.46657 | opp_overlap 1782166, overlap 1782167 GATTCTAATAAAAAA TTGAAAAT AAA ATTTTCAG ATTTAAGTTTTATAA CLD_2947 1781872 - 1782495 + | hypothetical protein TERM 2653 1782607 - 1782652 + T 93 -10.1 -3.84825 | gap 1, opp_overlap 1782601 1782609, overlap 1782608 1782611 CAAACATAAGGCAAT AACACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTGAG TTTGATATAGATAAA TERM 2654 1782608 - 1782651 + T 93 -13.6 -2.90573 | gap 1, opp_overlap 1782601 1782609, overlap 1782607 1782611 AAACATAAGGCAATA ACACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTGA GTTTGATATAGATAA TERM 2655 1782650 - 1782609 - T 100 -17.1 -3.7744 | gap 1, opp_overlap 1782608 1782607 1782611, overlap 1782601 AACATAAGGCAATAA CACTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAGTG AGTTTGATATAGATA TERM 2656 1782611 - 1782648 + T 100 -13.9 -2.69601 | gap 1, opp_overlap 1782609 1782601, overlap 1782608 1782607 CATAAGGCAATAACA CTTTAAATCTTCTTATCT TAA AG-TAAGAAGATTTAAAG TGAGTTTGATATAGA CLD_2946 1783118 - 1782783 - | hypothetical protein TERM 2657 1783412 - 1783399 - H 86 -3.9 -6.02919 | TTATAAATAAAAAAA CATAA ACTA TTATG AAGGGATAAATTATA TERM 2658 1783677 - 1783654 - g 81 -8.4 -4.32482 | overlap 1783665 AGGGACAATTTAAAA TTTTTATAGA AGGT TCTATAAAAA TAAGAATATTGTTTT CLD_2945 1783446 - 1785332 + | hypothetical protein CLD_2944 1785434 - 1785889 + | hypothetical protein TERM 2659 1785975 - 1785927 - T 100 -18.1 -4.08887 | opp_overlap 1785933 1785938 ATTATTTAAAGTAAA TCATAACTAAATACATAATAATA TAC CATTATTATGTATTTAGTTATAA AAAAGCATATCTTTT TERM 2660 1785933 - 1785969 + T 100 -14.2 -3.28924 | opp_overlap 1785927, overlap 1785938 TAAAGTAAATCATAA CTAAATACATAATAAT ATACC ATTATTATGTATTTAG TTATAAAAAAGCATA TERM 2661 1785938 - 1785964 + T 78 -8.3 -3.9941 | opp_overlap 1785927, overlap 1785933 TAAATCATAACTAAA TACATAATAAT ATACC ATTATTATGTA TTTAGTTATAAAAAA TERM 2662 1786019 - 1785997 - T 100 -12.2 -4.57837 | opp_overlap 1785997 ATATCTTTTCAAAAA CATACCTATT TTC AATAGGTATG TTTTTATTTCGGAGT TERM 2663 1785997 - 1786019 + T 100 -12.2 -5.27938 | opp_overlap 1785997 ATATCTTTTCAAAAA CATACCTATT TTC AATAGGTATG TTTTTATTTCGGAGT CLD_2943 1788287 - 1786185 - | sensor histidine kinase CLD_2942 1789017 - 1788325 - | DNA-binding response regulator TERM 2664 1789219 - 1789233 + H 89 -4.4 -6.04324 | opp_overlap 1789219 TATCTTTTATATAGA TTTTAT TTA ATAAAA TTTTTTCTTTTTTAG CLD_2941 1789596 - 1790822 + | major facilitator family transporter TERM 2665 1790839 - 1790816 - T 81 -7 -4.87626 | opp_overlap 1790816 1790819 TTTTAATAGTAAAAA TAATTAAATA AATT TATTTAATTA TTTCTGTAAACGTTA TERM 2666 1790816 - 1790839 + T 73 -7 -4.0492 | opp_overlap 1790816, overlap 1790819 TTTTAATAGTAAAAA TAATTAAATA AATT TATTTAATTA TTTCTGTAAACGTTA TERM 2667 1791292 - 1791269 - T 89 -9 -4.55544 | gap 1, opp_overlap 1791268 1791266 1791269 AATATATAATGAAAA GGACAGGA-TA TAA TATTCCTGTCC CTATTAATAACTTGT TERM 2668 1791269 - 1791292 + T 72 -9 -2.50338 | gap 1, opp_overlap 1791269, overlap 1791268 1791266 AATATATAATGAAAA GGACAGGATAT AAT AT-TCCTGTCC CTATTAATAACTTGT CLD_2940 1792234 - 1791377 - | HAD family hydrolase CLD_2939 1793013 - 1792246 - | DeoR family transcriptional regulator TERM 2669 1792460 - 1792446 - G 74 -8.6 -3.29144 | TCATTTTTTTCATAA CAGAAG CAT CTTCTG CATGTGCCACAGTTA TERM 2670 1792863 - 1792878 + g 83 -7.6 -4.64657 | overlap 1792877 CACCACCATGAGTTC GAAGGA TTGC TCCTTC TTTTTCAAGATTTAC TERM 2671 1793912 - 1793896 - g 74 -6.7 -4.28018 | overlap 1793905 AATAGCCTATGAAAA TATAAAG GAG CTTTATA AAGCATTAGACAAGC CLD_2938 1793546 - 1794076 + | putative RNA polymerase sigma factor CLD_2937 1794266 - 1794454 + | hypothetical protein TERM 2672 1794533 - 1794487 - T 79 -8.2 -4.12899 | opp_overlap 1794488 1794491 1794513, overlap 1794488 1794491 ATTAGAAGTAAATAA GTGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTAT TTTAAAATATTATTA TERM 2673 1794488 - 1794532 + T 100 -16.1 -4.21314 | opp_overlap 1794487 1794488 1794491, overlap 1794491 1794513 TTAGAAGTAAATAAG TGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTA TTTTAAAATATTATT TERM 2674 1794532 - 1794488 - T 90 -11.7 -3.06655 | opp_overlap 1794488 1794491 1794513, overlap 1794487 1794491 TTAGAAGTAAATAAG TGAGGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCCTTA TTTTAAAATATTATT TERM 2675 1794529 - 1794491 - T 91 -13.4 -2.7363 | opp_overlap 1794491 1794488 1794513, overlap 1794488 1794487 GAAGTAAATAAGTGA GGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCC TTATTTTAAAATATT TERM 2676 1794491 - 1794529 + T 100 -15.6 -4.2142 | opp_overlap 1794488 1794487 1794491, overlap 1794488 1794513 GAAGTAAATAAGTGA GGGGATATTTCAAGATTA AAT TTATTTTGAAATATCCCC TTATTTTAAAATATT CLD_2936 1798370 - 1794741 - | collagenase TERM 2677 1797671 - 1797683 + g 74 -6.3 -4.4388 | CATCCGCTTTTAATT TATCC TTT GGATA TTTGTTCATTTCTCT TERM 2678 1798736 - 1798761 + H 87 -6.9 -5.42198 | opp_overlap 1798738, overlap 1798738 TATCTAGGAATTTTA AACCTAAGGGA AATA TCCTTTAGGTC TTTTATTTTTTAAGG TERM 2679 1798738 - 1798759 + H 89 -9.5 -4.32882 | opp_overlap 1798738, overlap 1798736 TCTAGGAATTTTAAA CCTAAGGGA AATA TCCTTTAGG TCTTTTATTTTTTAA TERM 2680 1798759 - 1798738 - H 70 -7.3 -3.67976 | opp_overlap 1798736 1798738 TCTAGGAATTTTAAA CCTAAGGGA AATA TCCTTTAGG TCTTTTATTTTTTAA metF 1798840 - 1799727 + | 5,10-methylenetetrahydrofolate reductase CLD_2934 1799888 - 1800568 + | hypothetical protein TERM 2681 1802476 - 1802460 - g 70 -3.7 -5.02231 | GAAAAATACGAAAAA GGTATAA TAT TTTTACC ACAGTTAATTCAATC CLD_2933 1800558 - 1802936 + | putative 5-methyltetrahydrofolate--homocysteine methyltransferase TERM 2682 1803071 - 1803016 - T 89 -8.7 -4.70169 | gap 1, opp_overlap 1803019, overlap 1803017 1803020 GTAGACTGAATAAAA CGCACT-CTTTCTAGGTAATAATTTA ATATA CAAATTATTACCTTGAAAGAAATGCT TAAAAATGTATTAGA TERM 2683 1803070 - 1803017 - T 95 -12.2 -3.41378 | gap 1, opp_overlap 1803019, overlap 1803016 1803020 TAGACTGAATAAAAC GCACT-CTTTCTAGGTAATAATTTA ATATA CAAATTATTACCTTGAAAGAAATGC TTAAAAATGTATTAG TERM 2684 1803066 - 1803020 - T 91 -12.7 -2.85242 | opp_overlap 1803019, overlap 1803017 1803016 ACTGAATAAAACGCA CTCTTTCTAGGTAATAATTTA ATATA CAAATTATTACCTTGAAAGAA ATGCTTAAAAATGTA TERM 2685 1803154 - 1803164 + T 72 -4 -5.40072 | TAAAAATGGAGGACG CATA GAT TATG TTTTTTTCAAGAAAA CLD_2932 1803864 - 1803445 - | hypothetical protein CLD_2931 1804798 - 1803923 - | hypothetical protein TERM 2686 1804150 - 1804134 - G 79 -8.1 -3.90586 | opp_overlap 1804134 AGAGTATGGTATAAA TCTTCAT CAA ATGAAGA GGATTTTAAGGATGA CLD_2930 1804943 - 1805269 + | hypothetical protein TERM 2687 1805500 - 1805537 + F 87 -7.1 -5.2696 | opp_overlap 1805498 1805500 CCTCTAAAAACTATA GAGCAGTACAATTTGGA GAAA TCTAAGTTACACTGCTC TTTTTTCGCTTTTAA CLD_2929 1805870 - 1806421 + | sigma-70 family RNA polymerase sigma factor CLD_2928 1806414 - 1807883 + | hypothetical protein TERM 2688 1807925 - 1807952 + F 100 -7.8 -5.68023 | opp_overlap 1807925 ATAAATAAGCAAAAA GAGTATTTCACT AAAA GGTGAGATGCTC TTTTTTTAATTCTAG acoR 1808233 - 1810185 + | aco operon transcriptional regulator TERM 2689 1810206 - 1810166 - f 79 -10 -2.61126 | overlap 1810165 1810194 ATAAATTAGAGGAAG TTTCAAAATGGGAAAAAT AATTA ATAATTCCCATTTTGAAA TAAGTATTTTCCCAA TERM 2690 1810254 - 1810271 + F 100 -11.3 -5.46706 | opp_overlap 1810254 AAATAATCTTTAGAA GCCTTGC AAAT GCAAGGC TTTTTCTTTTGGCAT TERM 2691 1810271 - 1810254 - f 93 -11.3 -3.35349 | opp_overlap 1810254 AAATAATCTTTAGAA GCCTTGC AAAT GCAAGGC TTTTTCTTTTGGCAT CLD_2926 1810354 - 1810725 + | hypothetical protein acoA 1810746 - 1811729 + | TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit acoB 1811732 - 1812703 + | TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit TERM 2692 1813652 - 1813638 - g 71 -7.2 -3.79866 | overlap 1813636 GGAGAAAGAGAAATA TCCTTT AAA AAAGGA GAAACTTTTATTTTT acoX 1812756 - 1813751 + | acetoin catabolism protein X TERM 2693 1814421 - 1814399 - g 76 -6.3 -4.68424 | opp_overlap 1814399 GAATTTATCCAAAAA TCTACTCCT TCTGT AGGAGAAGA TTTGATGGATAGAAG acoC 1813787 - 1815097 + | TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase acoL 1815110 - 1816501 + | TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase CLD_2920 1816526 - 1817521 + | putative lipoate-protein ligase A TERM 2694 1817661 - 1817687 + F 100 -8.8 -6.25741 | opp_overlap 1817661 AAAGTAAATAAGAAA GAGTATTTCGCT AAA AGTGAGATGCTC TTTTTTTTGTTATTT CLD_2919 1817909 - 1819054 + | glycine betaine/L-proline ABC transporter, ATP-binding protein TERM 2695 1820498 - 1820481 - g 81 -2.7 -5.66989 | opp_overlap 1820481 GAAACATTAAAAAAA TTCCC AGAGCTTA GGGAA GTTTTAGGGAAGCTA CLD_2918 1819047 - 1820630 + | glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein TERM 2696 1820760 - 1820724 - f 79 -9 -3.65294 | gap 1, opp_overlap 1820724, overlap 1820720 TTCTATATAAAGCAA TAGCGGTAGTTATATAT TAGG AT-TTTAACTACCGCTA TTTTTTTATAAATAA TERM 2697 1820724 - 1820760 + F 100 -9 -5.64274 | gap 1, opp_overlap 1820724 1820720 TTCTATATAAAGCAA TAGCGGTAGTTATATAT TAGG AT-TTTAACTACCGCTA TTTTTTTATAAATAA TERM 2698 1821332 - 1821300 - g 75 -4.5 -5.14965 | gap 1, opp_overlap 1821308, overlap 1821302 AGCTTCAGCAAAAAA GATTAATATAACTA AAGACA TAGTTATATTAA-C AGCTACTTCAGGAGA TERM 2699 1821331 - 1821302 - g 81 -8.2 -4.20707 | opp_overlap 1821308, overlap 1821300 CTTCAGCAAAAAAGA TTAATATAACTA AAGACA TAGTTATATTAA CAGCTACTTCAGGAG thrC 1820920 - 1822401 + | threonine synthase thrB 1822411 - 1823304 + | homoserine kinase TERM 2700 1823548 - 1823526 - g 76 -7 -4.51174 | overlap 1823528 TTATGATAATGAAAA CAGAAGATAC ATA GTACCTTCAG CGCCAGGTAAAAGAT TERM 2701 1823546 - 1823528 - g 77 -8.2 -3.85899 | overlap 1823526 ATGATAATGAAAACA GAAGATAC ATA GTACCTTC AGCGCCAGGTAAAAG CLD_2915 1823431 - 1824750 + | aspartokinase TERM 2702 1826199 - 1826189 - g 72 -2.6 -5.38951 | AATCCATAGAAAAAA TAAA GAA TTTA GATGTAGTAGACAAA hom 1824973 - 1826250 + | homoserine dehydrogenase TERM 2703 1826270 - 1826260 - f 73 -6.8 -4.33004 | overlap 1826257 AGCTAATTAAAATAA GGTG TTT CACC ATAAAAAGATTTAAA TERM 2704 1826960 - 1826949 - g 89 -4.4 -5.94214 | opp_overlap 1826941 1826949, overlap 1826941 AATATAATAAAAAAA TCTC ATGA GAGA TCTGTTTATTTTGGA CLD_2913 1826907 - 1828817 + | sensory box sigma-54 dependent transcriptional regulator TERM 2705 1828956 - 1828920 - f 89 -9.7 -4.24569 | opp_overlap 1828932, overlap 1828917 1828932 1828939 TAAAAATAATAAGAA CTGTATAATAAATAAAC AAT GTTTAATTTTTATACAG TAAAAAGCAGCTTAA TERM 2706 1828997 - 1828963 - f 100 -21.8 -4.84527 | opp_overlap 1828963 TTTATACAGTAAAAA GCAGCTTAATGTATAG TTT CTATACATTAAGCTGC TTTTTATTTTTAGTG TERM 2707 1828963 - 1828997 + F 100 -21.8 -5.65496 | opp_overlap 1828963 TTTATACAGTAAAAA GCAGCTTAATGTATAG TTT CTATACATTAAGCTGC TTTTTATTTTTAGTG TERM 2708 1829034 - 1829059 + F 83 -9.3 -3.49756 | opp_overlap 1829034 1829040, overlap 1829040 CCTTATTAAGGTAAA TACAAATAAAT TTAA ATTTATTTGTA TTGTAGTAGTTATTA TERM 2709 1829059 - 1829034 - f 84 -9.3 -3.78329 | opp_overlap 1829034 1829040, overlap 1829040 CCTTATTAAGGTAAA TACAAATAAAT TTAA ATTTATTTGTA TTGTAGTAGTTATTA CLD_2912 1829327 - 1830493 + | NADH-dependent butanol dehydrogenase TERM 2710 1830552 - 1830502 - f 83 -5.9 -5.27477 | gap 1, opp_overlap 1830506 1830511 1830515, overlap 1830503 1830505 1830506 1830515 ATTTTAATTAAAAAA CTATTTCAATAAAGTAATATAACT TTAA AGTAATATTACTTTATTGT-ATAA CTTATAACTCTAAAA TERM 2711 1830551 - 1830503 - f 70 -7.2 -3.75402 | gap 1, opp_overlap 1830506 1830511 1830515, overlap 1830502 1830505 1830506 1830515 TTTTAATTAAAAAAC TATTTCAATAAAGTAATATAACT TTAA AGTAATATTACTTTATTGT-ATA ACTTATAACTCTAAA TERM 2712 1830550 - 1830505 - f 70 -7.9 -3.44982 | opp_overlap 1830506 1830511 1830515, overlap 1830503 1830502 1830506 1830515 TTAATTAAAAAACTA TTTCAATAAAGTAATATAACT TTAA AGTAATATTACTTTATTGTAT AACTTATAACTCTAA TERM 2713 1830549 - 1830506 - f 83 -11.4 -2.65904 | opp_overlap 1830506 1830511 1830515, overlap 1830505 1830503 1830502 1830515 TAATTAAAAAACTAT TTCAATAAAGTAATATAACT TTAA AGTAATATTACTTTATTGTA TAACTTATAACTCTA TERM 2714 1830506 - 1830549 + F 83 -11.4 -2.61106 | opp_overlap 1830505 1830503 1830502 1830506 1830515, overlap 1830511 1830515 TAATTAAAAAACTAT TTCAATAAAGTAATATAACT TTAA AGTAATATTACTTTATTGTA TAACTTATAACTCTA TERM 2715 1830511 - 1830544 + F 89 -9.9 -3.56558 | opp_overlap 1830506 1830505 1830503 1830502 1830515, overlap 1830506 1830515 AAAAAACTATTTCAA TAAAGTAATATAACT TTAA AGTAATATTACTTTA TTGTATAACTTATAA TERM 2716 1830515 - 1830540 + F 72 -6.3 -4.40601 | opp_overlap 1830506 1830505 1830503 1830502 1830515, overlap 1830511 1830506 AACTATTTCAATAAA GTAATATAACT TTAA AGTAATATTAC TTTATTGTATAACTT TERM 2717 1830555 - 1830602 + F 87 -10.2 -3.37915 | opp_overlap 1830560 1830561 1830568, overlap 1830560 1830568 CTTTATTGTATAACT TATAACTCTAAAACTTCCTTTT TAAA AAGAGGAAGTTTTAGAATTGCA TATTACTTTATAAAA TERM 2718 1830560 - 1830597 + F 93 -12.3 -3.22877 | opp_overlap 1830560 1830561 1830568, overlap 1830555 1830568 TTGTATAACTTATAA CTCTAAAACTTCCTTTT TAAA AAGAGGAAGTTTTAGAA TTGCATATTACTTTA TERM 2719 1830597 - 1830560 - f 95 -12.3 -3.45054 | opp_overlap 1830560 1830555 1830568, overlap 1830561 1830568 TTGTATAACTTATAA CTCTAAAACTTCCTTTT TAAA AAGAGGAAGTTTTAGAA TTGCATATTACTTTA TERM 2720 1830596 - 1830561 - f 91 -13.6 -2.66711 | opp_overlap 1830560 1830555 1830568, overlap 1830560 1830568 TGTATAACTTATAAC TCTAAAACTTCCTTTT TAAA AAGAGGAAGTTTTAGA ATTGCATATTACTTT TERM 2721 1830568 - 1830589 + F 80 -8.1 -4.19953 | opp_overlap 1830561 1830560 1830568, overlap 1830560 1830555 CTTATAACTCTAAAA CTTCCTTTT TAAA AAGAGGAAG TTTTAGAATTGCATA TERM 2722 1830589 - 1830568 - f 70 -5.9 -4.21936 | opp_overlap 1830568 1830560 1830555, overlap 1830561 1830560 CTTATAACTCTAAAA CTTCCTTTT TAAA AAGAGGAAG TTTTAGAATTGCATA CLD_2911 1830838 - 1831725 + | oxidoreductase, NAD/FAD-binding TERM 2723 1833022 - 1833042 + G 70 -8.3 -3.12666 | overlap 1833020 1833019 ATGCAGGTGGAGATG CAGTAACAG GTG CTGCTACTG TAATTTTAGCTATGG TERM 2724 1833082 - 1833072 - g 72 -6.8 -4.18506 | GGAGCTGGAAAACAA GCTG CTA CAGC CATAGATGAATATTT gltA 1831725 - 1833107 + | glutamate synthase (NADPH), homotetrameric TERM 2725 1833144 - 1833123 - f 76 -4.5 -5.38249 | opp_overlap 1833123, overlap 1833114 1833109 ATTAATTATAAAAAA CTTCAAC GTGATTTT GTTGAAG TTTTTTATTTTAATA TERM 2726 1833123 - 1833144 + F 88 -5.2 -5.83211 | opp_overlap 1833123 1833114 1833109 ATTAATTATAAAAAA CTTCAACG TGATTT TGTTGAAG TTTTTTATTTTAATA CLD_2909 1833336 - 1835300 + | sensory box sigma-54 dependent transcriptional regulator CLD_2908 1835307 - 1836008 + | pentapeptide repeat-containing protein TERM 2727 1836785 - 1836763 - g 71 -4.9 -4.72201 | TGTGAGAAAAAACAA TTACCATAC ATAGA GAATGGTAA GCCAGTTTCCAAAAT CLD_2907 1836577 - 1837230 + | hypothetical protein TERM 2728 1837286 - 1837262 - f 78 -5.8 -5.1848 | opp_overlap 1837261 1837255 1837262 AATTAATCTAAAAAA CCCTAAAG TCATTAAAC CTTTAGGG GTTTTCATTATCTTA TERM 2729 1837347 - 1837314 - f 100 -9.8 -5.34555 | opp_overlap 1837314 TTAGATTATAAAAAA GAGTCAAGTAATAT GATGGG ATATTACTTGGCTC TTTTTATATGGATTT TERM 2730 1837314 - 1837347 + F 100 -12 -5.01546 | opp_overlap 1837314 TTAGATTATAAAAAA GAGTCAAGTAATAT GATGGG ATATTACTTGGCTC TTTTTATATGGATTT TERM 2731 1837407 - 1837425 + F 73 -2.4 -5.79595 | overlap 1837399 TATTCTGTAAATAAA GGCACT TAATAAT AGTGTC TTTTTTATTTTAGAA CLD_2906 1837670 - 1838773 + | cell adhesion domain-containing protein TERM 2732 1838789 - 1838816 + F 83 -7.8 -4.67353 | opp_overlap 1838789 TTAAATATCAAAGAA GCACTTAAGG AATATAAA CCTTAGGTGC TTTTTACATACCTAA CLD_2905 1838868 - 1839077 + | hypothetical protein TERM 2733 1839237 - 1839214 - f 71 -5.5 -4.60797 | opp_overlap 1839214 1839217, overlap 1839209 GGTGGACATATAAAA TAATATTGA GAAACT TCAATATTA TCTTAAAGGAGGATA CLD_2904 1839257 - 1839409 + | putative lipoprotein TERM 2734 1839464 - 1839505 + F 86 -8.9 -4.39889 | opp_overlap 1839467 1839468, overlap 1839466 1839468 TAATCTTATATTAAC TAAGGGCCACCTATAAA TAATTAAT TTTATAGGTGGCCTGTG TTTTAATCTAATTAT TERM 2735 1839466 - 1839503 + F 84 -9.3 -3.7948 | opp_overlap 1839467 1839468, overlap 1839464 1839468 ATCTTATATTAACTA AGGGCCACCTATAAA TAATTAAT TTTATAGGTGGCCTG TGTTTTAATCTAATT TERM 2736 1839502 - 1839467 - f 90 -10.6 -3.43071 | opp_overlap 1839466 1839464 1839468, overlap 1839468 TCTTATATTAACTAA GGGCCACCTATAAA TAATTAAT TTTATAGGTGGCCT GTGTTTTAATCTAAT TERM 2737 1839468 - 1839501 + F 100 -14.1 -3.46858 | opp_overlap 1839467 1839468, overlap 1839466 1839464 CTTATATTAACTAAG GGCCACCTATAAA TAATTAAT TTTATAGGTGGCC TGTGTTTTAATCTAA TERM 2738 1839501 - 1839468 - f 100 -14.1 -2.65521 | opp_overlap 1839468 1839466 1839464, overlap 1839467 CTTATATTAACTAAG GGCCACCTATAAA TAATTAAT TTTATAGGTGGCC TGTGTTTTAATCTAA CLD_2903 1839766 - 1839927 + | hypothetical protein TERM 2739 1839937 - 1839950 + F 87 -3.8 -6.34616 | opp_overlap 1839937 GGTTAAGTTTTAAAG GGCT AATAAG AGCC TTTTTTTTATTTTCA CLD_2902 1840212 - 1840343 + | bacteriophage endolysin TERM 2740 1840761 - 1840787 + G 88 -8 -4.88288 | AGATATTGAGTTTTA GAGGTACTCCCA TTA TAGAAGTACCTC TTTTGTATTATTTTA CLD_2901 1840751 - 1840894 + | hypothetical protein TERM 2741 1841226 - 1841251 + F 80 -6.2 -5.24003 | gap 1, opp_overlap 1841226 1841228 TTATTTAAACAAAAA TAGGCGGC-CT AATTA AGTGCTGCCTA TTTTTAATTTTTATT TERM 2742 1841236 - 1841226 - f 81 -5.4 -5.30616 | opp_overlap 1841226, overlap 1841228 TTATTTAAACAAAAA TAGG CGG CCTA ATTAAGTGCTGCCTA TERM 2743 1841355 - 1841375 + F 100 -8.3 -5.38951 | opp_overlap 1841335 1841355 TTGCTTAAGCAAAAA GAACCCC AATGAAA GGGGTTC TTTTTTATATGGATT TERM 2744 1841375 - 1841355 - f 88 -8.3 -4.8622 | opp_overlap 1841355, overlap 1841335 TTGCTTAAGCAAAAA GAACCCC AATGAAA GGGGTTC TTTTTTATATGGATT CLD_2900 1841893 - 1842525 + | hypothetical protein CLD_2899 1842558 - 1843112 + | hypothetical protein TERM 2745 1843280 - 1843224 - f 100 -10.8 -4.81083 | gap 1, opp_overlap 1843224 TTCAATTATTAAAAA TCATATGTTGTATAGAA-TTCTA TTTAAATAAAGC TAGAAATTCTATACAACATATGA TTTTATTTTTATTTA TERM 2746 1843224 - 1843280 + F 100 -12.9 -5.48028 | gap 1, opp_overlap 1843224 TTCAATTATTAAAAA TCATATGTTGTATAGAAT-TCTATTT AAATAA AGCTAGAAATTCTATACAACATATGA TTTTATTTTTATTTA alr 1843563 - 1844732 + | alanine racemase TERM 2747 1844764 - 1844748 - f 75 -3.8 -5.56263 | opp_overlap 1844760 AGGATAAAATAAAAA TTTAGA AGATG TCTAAA AATAAAATATATTTA TERM 2748 1844896 - 1844934 + F 70 -4 -5.17786 | opp_overlap 1844900, overlap 1844883 1844898 ACGGTTTTGAGTCTT AACACCTAATTCTTCA GGATTTA TTAGGAATTAGGTGTA TTTTTAATTTTCTTA TERM 2749 1844898 - 1844932 + F 71 -6.6 -4.17748 | opp_overlap 1844900, overlap 1844883 1844896 GGTTTTGAGTCTTAA CACCTAATTCTTCA GGATTTA TTAGGAATTAGGTG TATTTTTAATTTTCT CLD_2897 1845191 - 1846663 + | methyl-accepting chemotaxis protein TERM 2750 1847641 - 1847624 - g 70 -4.3 -4.91657 | AAGGAAGAAAATAAA TTTAAAA CTTC TTTTAAA GCTTGTTCGCTATCT TERM 2751 1847729 - 1847709 - g 77 -7.6 -4.0942 | TAGCTACTATAGAAA CTGCAGCT GGGAT AACTGCAG GAGGAAAAACTGGAT CLD_2896 1846751 - 1848091 + | xanthine/uracil permease family protein TERM 2752 1848162 - 1848127 - f 90 -10 -3.72745 | opp_overlap 1848127, overlap 1848123 1848120 1848147 AAAATAAATAATGAA CCCTGTTTAATTAT TGAGAAGC ATAACTAAACAGGG TTTTAATTTTGCTTC TERM 2753 1848127 - 1848162 + F 83 -7.8 -4.72729 | opp_overlap 1848127 1848123 1848120 1848147 AAAATAAATAATGAA CCCTGTTTAATTAT TGAGAAGC ATAACTAAACAGGG TTTTAATTTTGCTTC CLD_2895 1848331 - 1849164 + | hypothetical protein TERM 2754 1849237 - 1849272 + T 100 -7.7 -5.56264 | opp_overlap 1849235 1849237 1849246 TTTAAAAGATGAAGA CCTATGAAATCCTTA TAATTT TAAGGAAATCATAGG TTTTTTATATTTAAA TERM 2755 1849272 - 1849237 - T 70 -7.7 -3.33884 | opp_overlap 1849237, overlap 1849235 1849246 TTTAAAAGATGAAGA CCTATGAAATCCTTA TAATTT TAAGGAAATCATAGG TTTTTTATATTTAAA CLD_2894 1850264 - 1849380 - | short chain dehydrogenase/reductase family oxidoreductase TERM 2756 1850506 - 1850462 - H 77 -5.2 -5.40474 | opp_overlap 1850462 ATTTGGTTAAAAAAA TCCTAGTCTGTTTTAAAAAT AAATG ATTTATAAATCGGACTAAGA GTTTAAACGTTAAAA TERM 2757 1852379 - 1852353 - g 71 -6.7 -3.87318 | opp_overlap 1852343, overlap 1852343 1852354 AACTAGCAGAGCAAA CCTCTACTTCT ACTAA AGAAATAGAGA ATATAGTGGAAGAAA CLD_2893 1850756 - 1852762 + | methyl-accepting chemotaxis protein TERM 2758 1852798 - 1852777 - f 93 -10.1 -3.87641 | opp_overlap 1852778, overlap 1852778 AATAGGTGTTATAAA GCCCCATGG TAAT CCATGGGGT TTTTCAATAATATGA TERM 2759 1852797 - 1852778 - f 93 -13.6 -2.92102 | opp_overlap 1852778, overlap 1852777 ATAGGTGTTATAAAG CCCCATGG TAAT CCATGGGG TTTTTCAATAATATG TERM 2760 1852778 - 1852797 + F 100 -13.6 -4.69664 | opp_overlap 1852777 1852778 ATAGGTGTTATAAAG CCCCATGG TAAT CCATGGGG TTTTTCAATAATATG TERM 2761 1852953 - 1852900 - f 100 -12.3 -4.4572 | gap 1, opp_overlap 1852898 1852905, overlap 1852903 1852905 AATATTCTAAAGAAA TAAT-AGTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACTTAGTA AGTTCTAATTTAATA TERM 2762 1852949 - 1852903 - f 100 -15.6 -4.33281 | opp_overlap 1852898 1852905, overlap 1852900 1852905 ATTCTAAAGAAATAA TAGTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTACTT AGTAAGTTCTAATTT TERM 2763 1852905 - 1852947 + F 100 -18.2 -3.23979 | opp_overlap 1852903 1852900 1852905, overlap 1852898 TCTAAAGAAATAATA GTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTAC TTAGTAAGTTCTAAT TERM 2764 1852947 - 1852905 - f 100 -18.2 -3.75911 | opp_overlap 1852905 1852898, overlap 1852903 1852900 TCTAAAGAAATAATA GTAGCTAGTTTATATATG TACTTAT CATATATAAACTAGCTAC TTAGTAAGTTCTAAT CLD_2892 1853673 - 1854686 + | hypothetical protein TERM 2765 1854750 - 1854712 - T 93 -13.3 -2.88544 | opp_overlap 1854712 1854749 TTTTATGTTCATACA TCCCTATTTAGCTAGGC GAGAA GCATGGCTAAATAGGGA TTTTTATTTTAATAA TERM 2766 1854712 - 1854750 + T 100 -15.5 -5.50723 | opp_overlap 1854712, overlap 1854749 TTTTATGTTCATACA TCCCTATTTAGCTAGGC GAGAA GCATGGCTAAATAGGGA TTTTTATTTTAATAA CLD_2891 1855390 - 1854839 - | hypothetical protein CLD_2890 1855673 - 1855533 - | hypothetical protein TERM 2767 1856627 - 1856646 + G 80 -2.2 -5.75945 | GGGGATGTTTACCCC GTATTATT TCCA AAGAATAC TTTTTTTTAAGCGAT TERM 2768 1858107 - 1858125 + G 74 -6.1 -4.48072 | TATAATGCCAGGCTA TCTTCTA AACTA TAGAAGA TTTTATGCTAAATAT CLD_2889 1855750 - 1858983 + | Snf2/Rad54 family helicase TERM 2769 1859033 - 1858985 - T 100 -15 -3.71649 | opp_overlap 1858987 1858990, overlap 1858987 1858990 TTTTTAAATTTTAAA TATAAGATGGTGTCTGAAAATA TATTT TATTTTGAGACACCATCTTATG TGTAATTAAGGGTTT TERM 2770 1859031 - 1858987 - T 100 -17.6 -3.43919 | opp_overlap 1858987 1858990, overlap 1858985 1858990 TTTAAATTTTAAATA TAAGATGGTGTCTGAAAATA TATTT TATTTTGAGACACCATCTTA TGTGTAATTAAGGGT TERM 2771 1858987 - 1859031 + T 100 -17.6 -3.00476 | opp_overlap 1858985 1858987 1858990, overlap 1858990 TTTAAATTTTAAATA TAAGATGGTGTCTGAAAATA TATTT TATTTTGAGACACCATCTTA TGTGTAATTAAGGGT TERM 2772 1859028 - 1858990 - T 100 -14.9 -3.84619 | opp_overlap 1858990 1858987, overlap 1858987 1858985 AAATTTTAAATATAA GATGGTGTCTGAAAATA TATTT TATTTTGAGACACCATC TTATGTGTAATTAAG TERM 2773 1858990 - 1859028 + T 100 -14.9 -3.646 | opp_overlap 1858987 1858985 1858990, overlap 1858987 AAATTTTAAATATAA GATGGTGTCTGAAAATA TATTT TATTTTGAGACACCATC TTATGTGTAATTAAG CLD_2888 1859443 - 1859039 - | hypothetical protein TERM 2774 1859367 - 1859390 + g 78 -6.8 -4.56775 | opp_overlap 1859367, overlap 1859369 1859380 TCCTTTGCATAAATA TTTTGAGGAG GTAT CTCTTCAAGA TTTTTAAAGGGAGAT TERM 2775 1859792 - 1859758 - H 70 -4.4 -5.09245 | opp_overlap 1859788, overlap 1859749 1859760 TCAAAATGATAAAAA TATCAAAATGAAACAT AAA AAGTATCATTTTGAGA ATAATTCTTATGATT TERM 2776 1859790 - 1859760 - H 73 -7 -4.15088 | opp_overlap 1859788, overlap 1859749 1859758 AAAATGATAAAAATA TCAAAATGAAACAT AAA AAGTATCATTTTGA GAATAATTCTTATGA CLD_2887 1860069 - 1860593 + | formylmethanofuran dehydrogenase E subunit-related protein TERM 2777 1862167 - 1862155 - g 71 -4.9 -4.76963 | CCAGATAAGAGAAAA GAAAT AAT ATTTC AGCTTCAAGAAAAAA CLD_2886 1860730 - 1862325 + | peptide/opine/nickel uptake ABC transporter substrate-binding protein TERM 2778 1862411 - 1862434 + G 70 -8.8 -2.70802 | overlap 1862410 ACATTAAATTTTTTT ATCCCTAGGC TTAT GCCTGGGGAC CCTTTTGTTATATTA TERM 2779 1863217 - 1863229 + G 71 -4.9 -4.81685 | overlap 1863209 AAGGGATTATCCTCT TATAC AGG GTATA TTTTTAGTAGTTACT CLD_2885 1862339 - 1863313 + | peptide/opine/nickel uptake ABC transporter permease CLD_2884 1863317 - 1864138 + | peptide/opine/nickel uptake ABC transporter permease TERM 2780 1864953 - 1864942 - g 73 -5.8 -4.62441 | overlap 1864943 TTCTATAGAAATAAA TCCC TTTG GGGA CCTATGGGGAATACC CLD_2883 1864169 - 1865851 + | ABC transporter, ATP-binding protein TERM 2781 1865969 - 1866000 + T 95 -10.4 -3.87373 | gap 1, opp_overlap 1865969, overlap 1865973 GTTAAATAAAGAAAA TAAAGGCGTACCATA GCT TA-GGTATGCCTTTA TTTATAGCAAATATC TERM 2782 1866000 - 1865969 - T 95 -8.2 -5.18866 | gap 1, opp_overlap 1865969 1865973 GTTAAATAAAGAAAA TAAAGGCGTACCATA GCT TA-GGTATGCCTTTA TTTATAGCAAATATC TERM 2783 1865973 - 1865996 + T 75 -6.8 -4.55295 | gap 1, opp_overlap 1865969, overlap 1865969 AATAAAGAAAATAAA GGCGTACCATA GCT TA-GGTATGCC TTTATTTATAGCAAA CLD_2882 1866681 - 1866094 - | putative DNA polymerase III, epsilon subunit TERM 2784 1866636 - 1866650 + g 73 -8.6 -3.10187 | overlap 1866633 GTTGTATAATTTCAC CAGGTT CTA AACCTG TAGTTTCTGTATCTA TERM 2785 1867256 - 1867229 - g 70 -4.2 -4.92812 | CTACAAGAAAACAAA TAGGAACAAAAT CTAT ATCCTGTGCCTA TGTAGAACCTACAGA CLD_2881 1866976 - 1867926 + | hypothetical protein TERM 2786 1868031 - 1868004 - f 95 -9.9 -4.208 | opp_overlap 1867998 1868004 TTGTAAAATTATAAA GCAGCCTCTAT GAGTGA ATAGGGGCTGC TAATATTTAAAGTGA TERM 2787 1868004 - 1868031 + F 89 -12.1 -2.85297 | opp_overlap 1868004, overlap 1867998 TTGTAAAATTATAAA GCAGCCTCTAT GAGTGA ATAGGGGCTGC TAATATTTAAAGTGA CLD_2880 1868196 - 1868831 + | UbiE/COQ5 family methlytransferase TERM 2788 1868901 - 1868945 + F 100 -17 -5.08824 | gap 1, opp_overlap 1868904 AATTAGTATTATTAG GAAGATAGTGTATCAAAAATA AATT TA-TTTTGATACACTATCTTC TTTTTTAACTCCAGG TERM 2789 1868942 - 1868904 - f 95 -12.9 -3.23692 | gap 1, opp_overlap 1868901 TAGTATTATTAGGAA GATAGTGTATCAAAAATA AATT TA-TTTTGATACACTATC TTCTTTTTTAACTCC CLD_2879 1869477 - 1870661 + | major facilitator family protein TERM 2790 1870792 - 1870768 - f 100 -11.7 -4.57353 | opp_overlap 1870772, overlap 1870772 CTTTAGTATACAAAA TAAATGGTATA TTA TATACCATTTA CATAAAGGAGAATAA TERM 2791 1870788 - 1870772 - f 88 -8.1 -4.84146 | opp_overlap 1870772, overlap 1870768 AGTATACAAAATAAA TGGTATA TTA TATACCA TTTACATAAAGGAGA TERM 2792 1870772 - 1870788 + F 75 -8.1 -3.64703 | opp_overlap 1870768 1870772 AGTATACAAAATAAA TGGTATA TTA TATACCA TTTACATAAAGGAGA CLD_2878 1870812 - 1871375 + | hypothetical protein CLD_2877 1871368 - 1871550 + | hypothetical protein fruK 1871576 - 1872481 + | fructose-1-phosphate kinase TERM 2793 1872595 - 1872564 - T 95 -11.1 -3.69809 | opp_overlap 1872564 1872569 1872570, overlap 1872570 GATTTAATAAATTAA TAAAAATCCCACA ATAAAA TGTGGGACTTTTA TATTAATCAAATTGC TERM 2794 1872564 - 1872595 + T 75 -8.9 -3.15574 | opp_overlap 1872564 1872570, overlap 1872569 1872570 GATTTAATAAATTAA TAAAAATCCCACA ATAAAA TGTGGGACTTTTA TATTAATCAAATTGC TERM 2795 1872570 - 1872589 + T 70 -7.9 -3.41627 | opp_overlap 1872570 1872564, overlap 1872569 1872564 ATAAATTAATAAAAA TCCCACA ATAAAA TGTGGGA CTTTTATATTAATCA TERM 2796 1872589 - 1872570 - T 93 -7.9 -5.25906 | opp_overlap 1872569 1872564 1872570, overlap 1872564 ATAAATTAATAAAAA TCCCACA ATAAAA TGTGGGA CTTTTATATTAATCA CLD_2875 1873977 - 1872598 - | amino acid/peptide transporter TERM 2797 1874065 - 1874101 + H 75 -6.9 -4.44974 | opp_overlap 1874064 1874059 1874065 AAAATATAATAAAAG CAATAAATATTAATTTA AAT TAAATAAAAATTTATTG TTTTATCCAATTTAC CLD_2874 1874556 - 1874711 + | hypothetical protein TERM 2798 1874756 - 1874776 + F 81 -5.5 -5.42259 | TTTATAAATAATAGG TATGCATTA GGG TAAAGCATA TTTTTTTGGACATCA TERM 2799 1875500 - 1875483 - g 78 -4.3 -5.43514 | overlap 1875475 AAAAGAATTAAAAAA TTTAAAT GAAA ATTTAAA GAGTTATAATACTAG CLD_2873 1874863 - 1875837 + | hypothetical protein TERM 2800 1876077 - 1876122 + T 100 -16.7 -3.41422 | opp_overlap 1876077, overlap 1876072 ATATACATGAGTTAA TTCTATATGTATTACTTCAAA ACTC TTTAAAGTAATACATATAGAA TTATAAGCTTATTTT TERM 2801 1876122 - 1876077 - T 100 -18.9 -3.12874 | opp_overlap 1876072 1876077 ATATACATGAGTTAA TTCTATATGTATTACTTCAAA ACTC TTTAAAGTAATACATATAGAA TTATAAGCTTATTTT CLD_2872 1876656 - 1876123 - | hypothetical protein CLD_2871 1876919 - 1877074 + | hypothetical protein CLD_2870 1877111 - 1878070 + | PfkB family kinase TERM 2802 1878202 - 1878174 - T 100 -7.6 -5.29445 | opp_overlap 1878174 TTTTAACAATAAAAA TCTGTGAGTAAA GTATG TTTATTCACAGA TTTTTATTTAATGCT TERM 2803 1878174 - 1878202 + T 100 -9.8 -5.34309 | opp_overlap 1878174 TTTTAACAATAAAAA TCTGTGAGTAAA GTATG TTTATTCACAGA TTTTTATTTAATGCT safA 1878852 - 1878217 - | spore coat assembly protein SafA TERM 2804 1878966 - 1878912 - R 91 -13.6 -2.69528 | opp_overlap 1878904 1878914 1878940, overlap 1878940 TTAAATTTAAATGTA TATTTATATCCTATAATAAAAA TGGAAATAAAT TTTTTATTATAGGATATAAATA TAATCATAATAAAAT TERM 2805 1878914 - 1878964 + r 88 -11.8 -2.83715 | opp_overlap 1878912 1878940, overlap 1878904 1878940 AAATTTAAATGTATA TTTATATCCTATAATAAAAA TGGAAATAAAT TTTTTATTATAGGATATAAA TATAATCATAATAAA TERM 2806 1879218 - 1879252 + r 70 -7.5 -3.31883 | gap 2, opp_overlap 1879207 1879216 1879218, overlap 1879217 AGATCCTATTAAATA GGCTACATC--TTAAAT CTT ATTTAATAGATGTAGCC CTTTATTTGGATTTT TERM 2807 1879252 - 1879218 - R 70 -7.5 -3.46088 | gap 2, opp_overlap 1879218 1879217, overlap 1879207 1879216 AGATCCTATTAAATA GGCTACATC--TTAAAT CTT ATTTAATAGATGTAGCC CTTTATTTGGATTTT CLD_2868 1879674 - 1879255 - | hypothetical protein CLD_2867 1880021 - 1880230 + | cold shock protein TERM 2808 1880378 - 1880405 + F 70 -4.3 -4.95302 | opp_overlap 1880378 TGTAATTTATATAAA CACTAGAAA CATTTAAAAC TTTCTAGTG TTTTATTATATTTAA CLD_2866 1880606 - 1882609 + | methyl-accepting chemotaxis protein TERM 2809 1882672 - 1882708 + T 100 -9.7 -5.49234 | opp_overlap 1882672 AATTTAAAATATGAA TTGAAGAAGTATGGTGA TGT TTAGTATACTTCTTCAA TTTTTTATTAAATAT TERM 2810 1882824 - 1882852 + T 86 -7.6 -4.90217 | opp_overlap 1882824 GCTATTAAAAATAAA CACTATCAAATT TTAAT AAATTGATAGTG TTTTTGATATATTTA TERM 2811 1882852 - 1882824 - T 90 -7.6 -4.91852 | opp_overlap 1882824 GCTATTAAAAATAAA CACTATCAAATT TTAAT AAATTGATAGTG TTTTTGATATATTTA TERM 2812 1882894 - 1882908 + T 73 -2.2 -5.74086 | overlap 1882895 TAGATTTTATGATTT TTATTT TCA AAATAG TTTTTTATTTGCTTT CLD_2865 1884493 - 1882913 - | putative drug resistance ABC transporter, ATP-binding protein CLD_2864 1884832 - 1885290 + | YbaK/prolyl-tRNA synthetase domain-containing protein TERM 2813 1885489 - 1885451 - f 100 -12 -3.89524 | opp_overlap 1885453, overlap 1885453 AGTTTATTTTATAAA GATGGTGTCTCAAAAT AGATTTA ATTTTGAGACACCATT TTATTTAGTTTGTAT TERM 2814 1885453 - 1885487 + F 100 -14.6 -5.06223 | opp_overlap 1885451 1885453 TTTATTTTATAAAGA TGGTGTCTCAAAAT AGATTTA ATTTTGAGACACCA TTTTATTTAGTTTGT TERM 2815 1885487 - 1885453 - f 100 -14.6 -3.53733 | opp_overlap 1885453, overlap 1885451 TTTATTTTATAAAGA TGGTGTCTCAAAAT AGATTTA ATTTTGAGACACCA TTTTATTTAGTTTGT TERM 2816 1886156 - 1886176 + GF 72 -6.9 -4.0641 | overlap 1886158 AAAGAGTGAGACCTT TAGTATCCT GTA AGGGTACTG TTTGTGTCCATGGAC CLD_2863 1885861 - 1886715 + | sulfite/nitrite reductase family protein CLD_2862 1886687 - 1886803 + | hypothetical protein TERM 2817 1886870 - 1886914 + T 95 -12.4 -3.38727 | opp_overlap 1886874, overlap 1886874 TCATTTGTCATAGGA TTAAGCGACTCGCTGCAAAT CTGTT ATTTGTAGTGAATCGCTTGA TTAGTTAGAATTATT TERM 2818 1886874 - 1886910 + T 93 -11 -3.45634 | opp_overlap 1886874, overlap 1886870 TTGTCATAGGATTAA GCGACTCGCTGCAAAT CTGTT ATTTGTAGTGAATCGC TTGATTAGTTAGAAT TERM 2819 1886910 - 1886874 - T 75 -8.8 -3.24747 | opp_overlap 1886874 1886870 TTGTCATAGGATTAA GCGACTCGCTGCAAAT CTGTT ATTTGTAGTGAATCGC TTGATTAGTTAGAAT cheV 1887818 - 1886925 - | chemotaxis protein CheV TERM 2820 1887156 - 1887170 + g 72 -2.8 -5.39721 | overlap 1887157 AATTTGTACATCCTC TGTGAA ATC TTCACC TTTTTTCTCTACTAG TERM 2821 1888631 - 1888614 - g 71 -4.9 -4.74858 | TAAAGAAAAAAAAGA TAACTGC CCAT ACAGTTA AAACTATAGTTATAG CLD_2860 1888187 - 1889452 + | DEAD-box ATP dependent DNA helicase TERM 2822 1889459 - 1889447 - f 80 -3.5 -5.98675 | CATAAAAAGAAAAAA TATTA ATT TAATA ACACAAAAAGGTGGT TERM 2823 1889464 - 1889512 + F 89 -9.1 -4.64766 | opp_overlap 1889469, overlap 1889469 TTAATTTAATAACAC AAAAAGGTGGTGTTTTAAAATAA AAT TTATTTTGAGACTCCTCCTTTTG TTTTTAGAATATAAA TERM 2824 1889469 - 1889507 + F 100 -9 -5.27023 | opp_overlap 1889469, overlap 1889464 TTAATAACACAAAAA GGTGGTGTTTTAAAATAA AAT TTATTTTGAGACTCCTCC TTTTGTTTTTAGAAT TERM 2825 1889507 - 1889469 - f 73 -4.6 -5.2015 | opp_overlap 1889469 1889464 TTAATAACACAAAAA GGTGGTGTTTTAAAATAA AAT TTATTTTGAGACTCCTCC TTTTGTTTTTAGAAT CLD_2859 1889775 - 1890611 + | RNA-binding protein TERM 2826 1891905 - 1891892 - g 74 -6.7 -4.32903 | AGGAAATACCTAAAA GGAAG GAGC CTTCC TCGGAAGAAGTAGAT deaD 1890790 - 1892235 + | ATP-dependent RNA helicase DeaD TERM 2827 1892289 - 1892324 + F 100 -11.6 -4.1552 | opp_overlap 1892278 1892288 1892285 1892284 1892281, overlap 1892278 1892276 GCCAGAATAATTTAT TCTATTTATATAATAT TTGG GTATTATATAAATAGA TTTATTAAGAAAATA TERM 2828 1892435 - 1892425 - g 72 -4 -5.17353 | opp_overlap 1892425 ATATTTAGTAAAAAA TTTG TAG CAAA GCTTTTATTGTATTC CLD_2857 1892389 - 1896846 + | hypothetical protein TERM 2829 1896885 - 1896940 + F 70 -7.4 -3.78904 | opp_overlap 1896886 1896892, overlap 1896888 1896892 AGATTTAATTTAAAA TC-GCAAAGGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCCTTTGTAGA TTCTTAAATTTAATA TERM 2830 1896888 - 1896936 + F 86 -11.5 -2.67717 | gap 1, opp_overlap 1896886 1896892, overlap 1896885 1896892 TTTAATTTAAAATCG CAAAGGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCCTTTG TAGATTCTTAAATTT TERM 2831 1896892 - 1896932 + F 71 -6.5 -4.02253 | gap 1, opp_overlap 1896886 1896892, overlap 1896888 1896885 ATTTAAAATCGCAAA GGGATTTAACATATAATT ATTAAA AATTA-GTGTTAGATCCC TTTGTAGATTCTTAA TERM 2832 1899398 - 1899386 - g 72 -4.1 -5.13722 | TGTATGAAAATAAAA TCTCA GAG CGAGA GGAATCCTTAAAAAA CLD_2856 1897240 - 1901319 + | leucine-rich repeat-containing protein TERM 2833 1901364 - 1901410 + F 95 -10.6 -3.95883 | opp_overlap 1901364 1901368, overlap 1901369 AAGCATATATAGGAA TAAAGGAGAATTAACATTTT TTATATT AAAAAGTTAATTCTCTTTTA TATTTTTGGGTGATA TERM 2834 1901410 - 1901364 - f 74 -8.4 -3.36313 | opp_overlap 1901364 1901369, overlap 1901368 AAGCATATATAGGAA TAAAGGAGAATTAACATTTT TTATATT AAAAAGTTAATTCTCTTTTA TATTTTTGGGTGATA TERM 2835 1901369 - 1901405 + F 91 -8.3 -4.98672 | opp_overlap 1901368 1901364, overlap 1901364 TATATAGGAATAAAG GAGAATTAACATTTT TTATATT AAAAAGTTAATTCTC TTTTATATTTTTGGG TERM 2836 1901629 - 1901660 + F 73 -5.5 -4.82667 | opp_overlap 1901635 1901639, overlap 1901631 TATTAATATTAGCTT TTTAAATAATTTT TATAAT AAAATTATTTAGA TTTTTGATATAATAA TERM 2837 1901755 - 1901767 + G 71 -4.9 -4.77719 | opp_overlap 1901755, overlap 1901750 GGTTTGATTTTAAAG CTAAT GAT ATTAG TTTTATTAGCTTTTA CLD_2855 1901725 - 1902654 + | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein TERM 2838 1902684 - 1902722 + T 81 -7.8 -4.43309 | gap 2, opp_overlap 1902684 1902677 CTATTAAATTATTAA TACTCCCTATTATCACAA CTAGA TTGTGA-A-TAGGGAGTA TTTTAATTAAAATTG TERM 2839 1902722 - 1902684 - T 74 -8.5 -3.34227 | gap 2, opp_overlap 1902684, overlap 1902677 CTATTAAATTATTAA TACTCCCTATTATCACAAC TAG ATTGTGA-A-TAGGGAGTA TTTTAATTAAAATTG CLD_2854 1903295 - 1902780 - | ferritin family protein TERM 2840 1903190 - 1903174 - G 71 -2.3 -5.44119 | overlap 1903186 TGCACTCTAAAAAAA TTAGC GAATCCA GCTAA ATCCTCTGATTCAGC CLD_2853 1903457 - 1903639 + | hypothetical protein CLD_2852 1903700 - 1904554 + | chemotaxis response regulator/CheC-like domain-containing protein cheX 1904554 - 1905015 + | chemotaxis protein CheX TERM 2841 1905100 - 1905071 - T 79 -8.1 -4.1891 | opp_overlap 1905071, overlap 1905074 TTTGTTTAATATAAA TAAGCACTTAT AACGTTGA ATAAGTGCTTA TTTTAAAATTATTCT TERM 2842 1905071 - 1905100 + T 80 -8.1 -4.24726 | opp_overlap 1905071 1905074 TTTGTTTAATATAAA TAAGCACTTAT AACGTTGA ATAAGTGCTTA TTTTAAAATTATTCT CLD_2850 1906556 - 1905198 - | hypothetical protein TERM 2843 1905699 - 1905717 + g 70 -3.9 -5.04601 | GAAAGGTGTATATCC TTCTGGA AGAGC TTCAGAA TTTTTGCTTTCTCCA TERM 2844 1907094 - 1907113 + H 100 -9.4 -6.23545 | opp_overlap 1907098 GTCTTTATTATTTAT TAAAGAGC TTAT GCTCTTTA TTTTTTTTATTTACA CLD_2849 1907295 - 1907498 + | small, acid-soluble spore protein alpha CLD_2848 1907559 - 1907759 + | small, acid-soluble spore protein beta TERM 2845 1907816 - 1907850 + F 100 -13.9 -4.42851 | opp_overlap 1907816 1907812 1907820 AAGCAATTTAATTGA GGAATCATATAAGAG TTTAT TTCTTATATGATTCC TTTTAAGTTTATTAG TERM 2846 1907850 - 1907816 - f 91 -13.2 -2.57757 | opp_overlap 1907816, overlap 1907812 1907820 AAGCAATTTAATTGA GGAATCATATAAGA GTTTATT TCTTATATGATTCC TTTTAAGTTTATTAG TERM 2847 1908691 - 1908673 - f 86 -7.6 -4.88295 | AAATAAACTCAAAAA TCATTTTA AAT TAAAATGA TGGAAATAAATGTAA TERM 2848 1908946 - 1908927 - f 73 -8 -3.66095 | opp_overlap 1908927 AAACCGCTAGCCAAA GTATATCT TCTA AGATATAC TTTTATTAATAACTT TERM 2849 1908927 - 1908946 + F 83 -8 -4.731 | opp_overlap 1908927 AAACCGCTAGCCAAA GTATATCT TCTA AGATATAC TTTTATTAATAACTT TERM 2850 1909077 - 1909063 - f 86 -4.2 -5.85737 | ATATTAATAAAAAAA GAAGGA TTT TCCCCC TTTTATATAGAATAT TERM 2851 1909119 - 1909098 - f 95 -11.7 -3.55842 | opp_overlap 1909097 1909096 TATAGAATATTATAA TCGCGAAAT ATAA ATTTCGCGA AGTTGTTGCTATTTT CLD_2847 1909160 - 1910140 + | phage integrase family site specific recombinase CLD_2846 1910934 - 1910461 - | hypothetical protein lexA 1911232 - 1911837 + | LexA repressor TERM 2852 1911909 - 1911948 + T 100 -9.7 -5.1485 | gap 1, opp_overlap 1911909 GATTGTTAATAAAAA TAATTCCTAGGAGT-ATT AAGTG AATAACTTCTAGGAATTA TTTTTATATTAATTC TERM 2853 1911948 - 1911909 - T 90 -7.5 -5.07486 | gap 1, opp_overlap 1911909 GATTGTTAATAAAAA TAATTCCTAGGAGT-ATT AAGTG AATAACTTCTAGGAATTA TTTTTATATTAATTC CLD_2844 1913317 - 1912034 - | aluminum resistance protein TERM 2854 1912614 - 1912633 + g 76 -7.8 -3.91196 | overlap 1912616 CCTGCCACTAAATCT GCGCCAAC GTCC GTTGGCTC TTTAGTATCTATAAA TERM 2855 1912616 - 1912631 + g 76 -9 -3.54089 | overlap 1912614 TGCCACTAAATCTGC GCCAAC GTCC GTTGGC TCTTTAGTATCTATA TERM 2856 1913423 - 1913403 - R 87 -6.2 -5.80248 | opp_overlap 1913403 TAACATATAAAAAAA GAATAGGC AATTA ACCTATTC TTTATCTTTATAATC hfq 1913675 - 1913418 - | RNA chaperone Hfq miaA 1914696 - 1913761 - | tRNA delta(2)-isopentenylpyrophosphate transferase CLD_2841 1916712 - 1914712 - | DNA mismatch repair protein MutL TERM 2857 1914801 - 1914825 + g 88 -3 -6.08342 | AAGTATATGGATTAT TTAATATAAG CATGT CTTCTATTAA TTTTTTTATTTCTTC TERM 2858 1914880 - 1914898 + g 75 -7.4 -4.11061 | AACTGCGGATTTGCA TGCCAGTG TAG CAATGGCA TTATATTTTATTGTA TERM 2859 1915689 - 1915705 + g 79 -8.1 -3.88137 | opp_overlap 1915688 1915686 1915689 CATATATATTAATAT CTTCTTT ATT AAAGAAG TTTGTAAAAGATTCT mutS 1919656 - 1916858 - | DNA mismatch repair protein MutS TERM 2860 1918617 - 1918633 + g 74 -6.7 -4.32951 | opp_overlap 1918632, overlap 1918632 TTTCCCACTATTCGT TCTATAT CAT ATATAGA TTTTAAATCTTCTTT TERM 2861 1919700 - 1919727 + r 72 -8.6 -3.20906 | opp_overlap 1919688 1919706, overlap 1919694 1919706 AAATTTAATCTTTTA AAAAAAGCTCTT ATTC AAGAGCTTTTTA ATTTATATTTAAATT TERM 2862 1919706 - 1919721 + r 90 -7.6 -5.08367 | opp_overlap 1919706, overlap 1919700 AATCTTTTAAAAAAA GCTCTT ATTC AAGAGC TTTTTAATTTATATT TERM 2863 1919721 - 1919706 - R 100 -7.6 -5.41746 | opp_overlap 1919700 1919706 AATCTTTTAAAAAAA GCTCTT ATTC AAGAGC TTTTTAATTTATATT miaB 1921088 - 1919736 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 2864 1921385 - 1921365 - H 72 -6.3 -4.40732 | opp_overlap 1921365 TAAATGACAAAAGAA TCATTAAAC GTT ATTTAATGA TAATTTATGACAAAA TERM 2865 1921445 - 1921459 + H 78 -4.4 -5.47431 | overlap 1921456 CATCACTGGATTTTT TTTAAA TTT TTTAAA TTTTTTATATATTAA CLD_2838 1921560 - 1922750 + | aminotransferase, classes I and II TERM 2866 1922833 - 1922786 - f 79 -7.3 -4.57755 | opp_overlap 1922786 1922790, overlap 1922790 ACGTACTAGATAAAA TAAATTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGATTTA TGTGTATGATGTAAA TERM 2867 1922786 - 1922833 + F 90 -11.7 -3.04269 | opp_overlap 1922786 1922790, overlap 1922790 ACGTACTAGATAAAA TAAATTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGATTTA TGTGTATGATGTAAA TERM 2868 1922790 - 1922829 + F 79 -8.1 -4.18367 | opp_overlap 1922786 1922790, overlap 1922786 ACTAGATAAAATAAA TTATCTCCTTTTAGGTT AAAATA AAACTAGAAGGAGATGA TTTATGTGTATGATG CLD_2837 1922835 - 1922996 + | hypothetical protein aspB 1923052 - 1924242 + | aspartate aminotransferase TERM 2869 1924231 - 1924279 + T 95 -9.9 -4.33417 | opp_overlap 1924240 1924247, overlap 1924233 1924247 1924273 1924274 1924276 GCTATAGAAAAATAT AACAACAAATAAAAAATAACCCT TTT GGGGTTATTTTTTATTTTATGTA TTTATTATAAATACA TERM 2870 1924233 - 1924277 + T 95 -12.5 -3.76888 | opp_overlap 1924240 1924247, overlap 1924231 1924247 1924273 1924274 1924276 TATAGAAAAATATAA CAACAAATAAAAAATAACCCT TTT GGGGTTATTTTTTATTTTATG TATTTATTATAAATA TERM 2871 1924270 - 1924240 - T 100 -12.9 -4.58859 | opp_overlap 1924233 1924231 1924247, overlap 1924247 AAATATAACAACAAA TAAAAAATAACCC TTTTG GGGTTATTTTTTA TTTTATGTATTTATT TERM 2872 1924263 - 1924247 - T 93 -6.6 -5.82036 | opp_overlap 1924233 1924231 1924247, overlap 1924240 ACAACAAATAAAAAA TAACCC TTTTG GGGTTA TTTTTTATTTTATGT TERM 2873 1924247 - 1924263 + T 95 -7.3 -5.8901 | opp_overlap 1924247 1924240, overlap 1924233 1924231 ACAACAAATAAAAAA TAACCCT TTT GGGGTTA TTTTTTATTTTATGT TERM 2874 1924276 - 1924294 + T 70 -7.6 -3.36868 | overlap 1924233 1924231 1924274 1924273 TTATTTTTTATTTTA TGTATTTA TTA TAAATACA TGCTTTTCTTTATAT CLD_2835 1925139 - 1924273 - | acetyltransferase CLD_2834 1926279 - 1925221 - | putative spore coat protein TERM 2875 1925625 - 1925612 - G 79 -5.3 -5.18726 | opp_overlap 1925612 TTTTGATAATAAAAA CTATG ATGG CATAG AGTTTTATTTGCTTG TERM 2876 1925707 - 1925683 - G 73 -5.7 -4.67353 | opp_overlap 1925688, overlap 1925684 TGATTTATTTAAAAA GGAAAGTGCTA CCA TAGCCCTTTCA TAAAAACTATCTATA TERM 2877 1925706 - 1925684 - G 79 -9.2 -3.3993 | opp_overlap 1925688, overlap 1925683 GATTTATTTAAAAAG GAAAGTGCTA CCA TAGCCCTTTC ATAAAAACTATCTAT TERM 2878 1926468 - 1926426 - R 83 -6.1 -5.36965 | gap 1, opp_overlap 1926426 1926431, overlap 1926431 1926460 TAAGATTATAAAAAA TAAAATATATGTATTA-ATA TTTT CATCTAATACATATACTTTA TACATTTAAATTATA TERM 2879 1926463 - 1926431 - R 75 -3.8 -5.49579 | gap 1, opp_overlap 1926431 1926426, overlap 1926426 1926460 TTATAAAAAATAAAA TATATGTATTA-ATA TTTT CATCTAATACATATA CTTTATACATTTAAA CLD_2833 1928443 - 1926527 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1-like protein cmk 1929160 - 1928507 - | cytidylate kinase aroH 1929607 - 1929236 - | chorismate mutase TERM 2880 1929539 - 1929557 + g 76 -9 -3.492 | overlap 1929537 TTCTGAAAAAAGTTT TATTGAAG CTT CTTCAATA TGTTTCACTTCATTT CLD_2830 1930830 - 1929607 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 2881 1929779 - 1929795 + g 71 -5.9 -4.41844 | ACATCAACACCTCCA GAAGTTA CTA TAGCTTC TTTTATAGGCCTTTT TERM 2882 1930003 - 1930036 + g 73 -9.1 -2.53089 | opp_overlap 1930019, overlap 1930002 1930001 TTTAAAATCTTTTTG TATTCTTTCATCTAA ATCA TTAGATGAAAGAGCA GGTTTTAAATTTATG TERM 2883 1931069 - 1931116 + r 73 -8 -3.67976 | opp_overlap 1931069 1931082, overlap 1931082 TTTATAAAAATATAC TAAAAACGAAAAAGAGGCTTGA TAAC TCAAACCTCTTTTTTATTTATA TTTAAGATTAATACC TERM 2884 1931116 - 1931069 - R 79 -10.2 -2.75877 | opp_overlap 1931069 1931082, overlap 1931082 TTTATAAAAATATAC TAAAAACGAAAAAGAGGCTTGA TAAC TCAAACCTCTTTTTTATTTATA TTTAAGATTAATACC TERM 2885 1931082 - 1931103 + r 93 -7.3 -5.7827 | opp_overlap 1931082 1931069, overlap 1931069 ACTAAAAACGAAAAA GAGGCTTGA TAAC TCAAACCTC TTTTTTATTTATATT TERM 2886 1931103 - 1931082 - R 100 -9.5 -5.1971 | opp_overlap 1931069 1931082, overlap 1931069 ACTAAAAACGAAAAA GAGGCTTGA TAAC TCAAACCTC TTTTTTATTTATATT gluD 1932389 - 1931124 - | glutamate dehydrogenase, NAD-specific TERM 2887 1931362 - 1931378 + g 88 -5.9 -5.52079 | TTAGTTAATATGTCT GGAGTAA CTG TTATTCC TTTTTCTTTTAATAT TERM 2888 1931743 - 1931753 + g 79 -5.4 -5.25893 | CCTATGCCTTGGATA GCTA ATT TAGC TTTTTTCATATCTAT TERM 2889 1932582 - 1932564 - R 73 -2.5 -5.72118 | gap 1, opp_overlap 1932564 AAAAAACAGAAAAAA GAGGT-AT AAAA ATGACCTC TTTTTTGCACAAGCT CLD_2828 1933508 - 1932624 - | RpiR family transcriptional regulator TERM 2890 1933561 - 1933605 + r 73 -6.8 -4.32951 | gap 1 ATGCATTATCTATTT CAGTT-TATCATCTATTGAAA ACTT TATCAATAGATGATGCAATTG TTTGTTAATTGAACT TERM 2891 1933719 - 1933748 + r 100 -9.5 -5.17054 | opp_overlap 1933723 TCATTGAAACTACTA TTAAGAGTATAGT TATG ACCATACTCTTAA TTTTTTAGATATTAT TERM 2892 1933744 - 1933723 - R 72 -8.1 -3.26473 | opp_overlap 1933719 TGAAACTACTATTAA GAGTATAGT TATG ACCATACTC TTAATTTTTTAGATA TERM 2893 1933793 - 1933772 - R 73 -7.5 -3.77464 | opp_overlap 1933772 ATATTATTCACCAAA TATAGTTTT GCAT AAAACTATA TTTTTGAAATTATTC TERM 2894 1933772 - 1933793 + r 83 -7.5 -4.70626 | opp_overlap 1933772 ATATTATTCACCAAA TATAGTTTT GCAT AAAACTATA TTTTTGAAATTATTC rluB 1934600 - 1933890 - | ribosomal large subunit pseudouridine synthase B TERM 2895 1934685 - 1934662 - R 75 -5.4 -4.96848 | GGTTTTATACAAAAA GTCAAAATTT AAGG AAATTATGAC GAACTTTTTAGAGTA TERM 2896 1934985 - 1935015 + r 100 -14.2 -3.49924 | opp_overlap 1934987 1934990 1934995, overlap 1934987 1934990 1934995 ATACTCTGTACTCTA AATAAGGAAAGTGC GAT GCACTTTCCTTATA TTATACTAATTTAGG TERM 2897 1934987 - 1935013 + r 100 -16.8 -3.31802 | opp_overlap 1934987 1934990 1934995, overlap 1934985 1934990 1934995 ACTCTGTACTCTAAA TAAGGAAAGTGC GAT GCACTTTCCTTA TATTATACTAATTTA TERM 2898 1935013 - 1934987 - R 100 -16.8 -3.60098 | opp_overlap 1934985 1934987 1934990 1934995, overlap 1934990 1934995 ACTCTGTACTCTAAA TAAGGAAAGTGC GAT GCACTTTCCTTA TATTATACTAATTTA TERM 2899 1934990 - 1935010 + r 100 -14.1 -3.7821 | opp_overlap 1934990 1934987 1934995, overlap 1934987 1934985 1934995 CTGTACTCTAAATAA GGAAAGTGC GAT GCACTTTCC TTATATTATACTAAT TERM 2900 1935010 - 1934990 - R 100 -14.1 -3.9392 | opp_overlap 1934987 1934985 1934990 1934995, overlap 1934987 1934995 CTGTACTCTAAATAA GGAAAGTGC GAT GCACTTTCC TTATATTATACTAAT TERM 2901 1935005 - 1934995 - R 71 -6.8 -4.14764 | opp_overlap 1934990 1934987 1934985 1934995, overlap 1934990 1934987 CTCTAAATAAGGAAA GTGC GAT GCAC TTTCCTTATATTATA TERM 2902 1934995 - 1935005 + r 71 -6.8 -4.09827 | opp_overlap 1934995 1934990 1934987, overlap 1934990 1934987 1934985 CTCTAAATAAGGAAA GTGC GAT GCAC TTTCCTTATATTATA TERM 2903 1935034 - 1935058 + r 73 -8.7 -2.85763 | opp_overlap 1935034, overlap 1935031 1935031 TACTAATTTAGGCAA TGTATTAGCTC CAT GAGGTAATACA TAAGTTTTTAGGTGT TERM 2904 1935058 - 1935034 - R 74 -8.7 -3.10409 | opp_overlap 1935031 1935031 1935034 TACTAATTTAGGCAA TGTATTAGCTC CAT GAGGTAATACA TAAGTTTTTAGGTGT CLD_2826 1936305 - 1935016 - | hypothetical protein CLD_2825 1937683 - 1936403 - | hypothetical protein TERM 2905 1937228 - 1937240 + g 85 -3.5 -5.67063 | GTTTTCCTTTTGGTA TAATA TTT TATTA TTTTTTTCTACTAAA TERM 2906 1937768 - 1937741 - R 78 -8.6 -3.9377 | opp_overlap 1937741 1937746 1937759, overlap 1937746 ATAATTCTAATTAAA TCAAAGCTTTAT TAGA ATTAAGCTTTGA TTTATAAAAATATAG TERM 2907 1937741 - 1937768 + r 78 -8.6 -3.88787 | opp_overlap 1937741 1937746, overlap 1937746 1937759 ATAATTCTAATTAAA TCAAAGCTTTAT TAGA ATTAAGCTTTGA TTTATAAAAATATAG TERM 2908 1937945 - 1937965 + r 82 -8.3 -4.5287 | opp_overlap 1937945, overlap 1937940 CTTGCATATAAAAAA CACAGGC CCATATA GCCTGTG TTTTGGTTGGTTTAA TERM 2909 1937965 - 1937945 - R 100 -9 -5.36441 | opp_overlap 1937940 1937945 CTTGCATATAAAAAA CACAGGCC CATAT AGCCTGTG TTTTGGTTGGTTTAA CLD_2824 1939380 - 1937977 - | glycosyl transferase, group 2 family protein CLD_2823 1939750 - 1939941 + | hypothetical protein TERM 2910 1940001 - 1940036 + F 100 -14.2 -6.25578 | opp_overlap 1940001 1940000 1940005 1940007 ATAAAACTGACAAAG CAAAGATGCCCGCTGT TTTT ATAGCGGGTATTTTTG TTTTTTTTATTTCCT CLD_2822 1940316 - 1942337 + | methyl-accepting chemotaxis protein TERM 2911 1942342 - 1942385 + T 100 -18.6 -3.37727 | opp_overlap 1942342 1942349, overlap 1942349 1942382 TTAAACTTTAACTAA TATAAAATGGAACCTAGATT AAAA AATCCAGGTTCCATTTTATA TTCCTATATATATTA TERM 2912 1942385 - 1942342 - T 100 -20.8 -3.3907 | opp_overlap 1942342 1942349 1942382, overlap 1942349 TTAAACTTTAACTAA TATAAAATGGAACCTAGATT AAAA AATCCAGGTTCCATTTTATA TTCCTATATATATTA TERM 2913 1942349 - 1942378 + T 100 -12.3 -4.7219 | opp_overlap 1942349 1942342, overlap 1942342 TTAACTAATATAAAA TGGAACCTAGATT AAAA AATCCAGGTTCCA TTTTATATTCCTATA TERM 2914 1942378 - 1942349 - T 100 -14.5 -4.73864 | opp_overlap 1942342 1942349, overlap 1942342 TTAACTAATATAAAA TGGAACCTAGATT AAAA AATCCAGGTTCCA TTTTATATTCCTATA CLD_2821 1943067 - 1942381 - | putative cytochrome c-type biogenesis protein CLD_2820 1943500 - 1943069 - | thioredoxin family protein TERM 2915 1943584 - 1943539 - R 81 -10.8 -2.66977 | opp_overlap 1943539 1943545 1943548, overlap 1943537 1943545 TATAATGTAAAAATT TCAAAATAACCTTCAAAGAA TATAAC TTCTCTGAAGGCTATTTCAA TTTTAACATACAATT TERM 2916 1943578 - 1943545 - R 95 -9.8 -4.31329 | opp_overlap 1943545 1943539 1943548, overlap 1943539 1943537 GTAAAAATTTCAAAA TAACCTTCAAAGAA TATAAC TTCTCTGAAGGCTA TTTCAATTTTAACAT CLD_2819 1944451 - 1943615 - | carbon-nitrogen family hydrolase TERM 2917 1944208 - 1944226 + g 80 -2.4 -5.68039 | CTGCTACAATATAAA GCTCTAAA TCT TTTGCAGC TTTTTTTATAGCTTT CLD_2818 1945136 - 1944582 - | hypothetical protein TERM 2918 1945186 - 1945231 + H 84 -5.1 -5.72622 | opp_overlap 1945187 1945195 1945202, overlap 1945187 1945195 GTGCATTTTTAATAT ATTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAAG TTTTTTGTTTATAGA TERM 2919 1945230 - 1945187 - H 85 -10.8 -3.07895 | opp_overlap 1945186 1945187 1945195, overlap 1945195 1945202 TGCATTTTTAATATA TTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAA GTTTTTTGTTTATAG TERM 2920 1945187 - 1945230 + H 79 -8.6 -4.01946 | opp_overlap 1945187 1945195 1945202, overlap 1945186 1945195 TGCATTTTTAATATA TTCTACAATTAAAAATAAAA GTCC TTTTATTTTTAATTGTTAAA GTTTTTTGTTTATAG TERM 2921 1945222 - 1945195 - H 77 -8.8 -3.36648 | opp_overlap 1945195 1945187 1945186, overlap 1945187 1945202 TAATATATTCTACAA TTAAAAATAAAA GTCC TTTTATTTTTAA TTGTTAAAGTTTTTT TERM 2922 1945195 - 1945222 + H 79 -8.8 -3.75617 | opp_overlap 1945187 1945195 1945202, overlap 1945187 1945186 TAATATATTCTACAA TTAAAAATAAAA GTCC TTTTATTTTTAA TTGTTAAAGTTTTTT TERM 2923 1945819 - 1945837 + G 83 -7.6 -4.55673 | opp_overlap 1945818 1945823, overlap 1945823 AAGATAGTAAAGGAG CAAATAAT ATA ATTATTTG TTTTATAATGTCTTT CLD_2817 1945548 - 1946981 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2924 1947005 - 1947058 + T 100 -18.1 -3.34236 | gap 1, opp_overlap 1947005 1947011, overlap 1947011 ACGATAAAGATTAAA TTAAAAGGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCCTTTTGA TTATAAAATAAGTTT TERM 2925 1947058 - 1947005 - T 100 -13.7 -4.05181 | gap 1, opp_overlap 1947005 1947011, overlap 1947011 ACGATAAAGATTAAA TTAAAAGGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCCTTTTGA TTATAAAATAAGTTT TERM 2926 1947011 - 1947052 + T 100 -14.9 -4.49389 | gap 1, opp_overlap 1947011 1947005, overlap 1947005 AAGATTAAATTAAAA GGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCC TTTTGATTATAAAAT TERM 2927 1947052 - 1947011 - T 100 -12.7 -4.61284 | gap 1, opp_overlap 1947005 1947011, overlap 1947005 AAGATTAAATTAAAA GGCTATAATTTCT-AGAATA TTA TATTCTTAGAAGTTATAGCC TTTTGATTATAAAAT pcaC 1947450 - 1947106 - | 4-carboxymuconolactone decarboxylase CLD_2815 1948103 - 1947588 - | acetyltransferase TERM 2928 1948237 - 1948285 + r 100 -10 -5.3658 | gap 1, opp_overlap 1948240, overlap 1948240 1948248 TTATATTATATCTAA AAATATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATACTA TTTTATTTTTCTAAT TERM 2929 1948282 - 1948240 - R 100 -16.1 -4.7173 | gap 1, opp_overlap 1948240 1948237 1948248 TATTATATCTAAAAA TATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATA CTATTTTATTTTTCT TERM 2930 1948240 - 1948282 + r 100 -16.1 -3.1503 | gap 1, opp_overlap 1948240, overlap 1948237 1948248 TATTATATCTAAAAA TATAGAAATACCACAAGGAA TATA TTCCTTGTGGTATTT-TATA CTATTTTATTTTTCT TERM 2931 1948248 - 1948275 + r 100 -15.8 -4.60713 | opp_overlap 1948240, overlap 1948240 1948237 CTAAAAATATAGAAA TACCACAAGGAA TATA TTCCTTGTGGTA TTTTATACTATTTTA CLD_2814 1948782 - 1948288 - | putative lipoprotein CLD_2813 1949326 - 1949015 - | hypothetical protein CLD_2812 1949540 - 1949307 - | hypothetical protein CLD_2811 1949674 - 1949916 + | hypothetical protein CLD_2810 1949919 - 1951643 + | sensory box-containing [Fe] hydrogenase CLD_2809 1951640 - 1952809 + | sporulation domain-containing protein CLD_2808 1952957 - 1954696 + | sensory box-containing [Fe] hydrogenase TERM 2932 1954812 - 1954841 + T 90 -12.3 -3.10098 | opp_overlap 1954812 1954811, overlap 1954808 1954821 AGAAATTTTAACAAC GGTGGAAAAGTCA TTTT TGGCTTTTTCACC TAGTTTTCACATCCT hypE 1956095 - 1955091 - | hydrogenase expression/formation protein HypE hypD 1957336 - 1956263 - | hydrogenase expression/formation protein HypD CLD_2805 1957556 - 1957329 - | hypothetical protein hypF 1959957 - 1957519 - | [NiFe] hydrogenase maturation protein HypF TERM 2933 1958580 - 1958600 + gr 73 -5.5 -4.57921 | opp_overlap 1958578 TCATGCACACATATC CCTTTTG AGACAGG CAAAAGG TGTTTTTTTCTTCTG CLD_2803 1960201 - 1959941 - | hypothetical protein CLD_2802 1960971 - 1960456 - | heme/steroid binding domain-containing protein CLD_2801 1961547 - 1961131 - | hydrogenase maturation protease hupL 1962995 - 1961580 - | [Ni/Fe] hydrogenase, large subunit TERM 2934 1961946 - 1961959 + g 81 -2.5 -5.75822 | opp_overlap 1961946, overlap 1961937 TTCTGATATATTATA TAATA TATT TATTA TTTTTTTAGTTTCTA hupS 1963969 - 1963097 - | [Ni/Fe] hydrogenase, small subunit TERM 2935 1963422 - 1963444 + g 72 -8.4 -3.29332 | opp_overlap 1963410 1963407, overlap 1963420 1963423 GTACCTACCACCCAG TCAGGATGAC AAG GACATCCTGG TAATTTTATTACTTC TERM 2936 1963423 - 1963443 + g 76 -9.7 -2.56514 | opp_overlap 1963410 1963407, overlap 1963422 1963420 TACCTACCACCCAGT CAGGATGAC AAG GACATCCTG GTAATTTTATTACTT CLD_2798 1964237 - 1964938 + | TraX family protein TERM 2937 1965070 - 1965013 - f 93 -12.6 -2.97513 | opp_overlap 1965013 ATATCTACAATTATA TTTGTATTTCTCATATAAAAAATTAA GTAGGT TTAATTTCTTATATGAGAAATACCCA CTATGTATAAAGTAT CLD_2797 1965391 - 1965504 + | hypothetical protein TERM 2938 1965888 - 1965848 - g 95 -11.3 -3.84712 | opp_overlap 1965848, overlap 1965856 GAAGTTGATAGCAAA GAGAAAAAGCACCCATCCT CCA AAGATTAGTGCCTTTTCCC TTGTTTAACATATTT CLD_2796 1965710 - 1965877 + | hypothetical protein TERM 2939 1965880 - 1965856 - f 78 -5.7 -5.22289 | opp_overlap 1965848, overlap 1965848 TAGCAAAGAGAAAAA GCACCCATCCT CCA AAGATTAGTGC CTTTTCCCTTGTTTA TERM 2940 1966007 - 1966031 + F 100 -11.5 -4.54821 | overlap 1965999 AAACGTTCTAGGATC GGCTTAGTGTT CTC AGCACTAGGCC TTTTCTAATTAGAAT TERM 2941 1966047 - 1966068 + F 74 -6.1 -4.67635 | opp_overlap 1966046 1966047 TTTTCTAATTAGAAT TTTTAAAAA CTTA TTTTTAAAA TTTTGTACTTTTCAG TERM 2942 1966947 - 1966907 - g 100 -11.3 -3.94853 | opp_overlap 1966907, overlap 1966915 GAAGTTAATAGCAAA GAGAAAAAGCACCCATCCT CCA AAGATTAGTGCCTTTTCCC TTGTTTAACATATTT CLD_2795 1966769 - 1966936 + | hypothetical protein TERM 2943 1966939 - 1966915 - T 78 -5.7 -5.22289 | opp_overlap 1966907, overlap 1966907 TAGCAAAGAGAAAAA GCACCCATCCT CCA AAGATTAGTGC CTTTTCCCTTGTTTA TERM 2944 1967063 - 1967085 + T 100 -11.4 -4.98255 | overlap 1967054 AACGTTCTAGGATTG GCTTAGTGTT CTT AGCACTAAGC TTTTTCTAATTAGGA CLD_2794 1969101 - 1967545 - | drug resistance ABC transporter ATP-binding protein CLD_2793 1971195 - 1969462 - | [Fe] hydrogenase CLD_2792 1973110 - 1971215 - | putative [Fe] hydrogenase, electron-transfer subunit TERM 2945 1972084 - 1972071 - G 72 -8.1 -3.34398 | GGCTTGTTCCAAAGA CCAGC TTCT GCTGG GAATGGTGGTTTATA TERM 2946 1972670 - 1972699 + g 93 -8.1 -5.27938 | overlap 1972662 TCTTTTTTGTTTTTT GTAAAAAGACA TTTCATCT TGTCTTTTTAC TTTTTCTTTAAGGGT CLD_2791 1973601 - 1973122 - | putative [Fe] hydrogenase, electron-transfer subunit CLD_2790 1975286 - 1974099 - | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 2947 1975325 - 1975355 + r 83 -11.4 -2.75481 | opp_overlap 1975326, overlap 1975335 CTCAAAACGCAAAAA ATCCTACAAATAAT TAT ATTATTTGTAGGAG TCATTAGCATTACGC TERM 2948 1975354 - 1975326 - R 100 -14.9 -5.2696 | opp_overlap 1975325 1975335 TCAAAACGCAAAAAA TCCTACAAATAAT TAT ATTATTTGTAGGA GTCATTAGCATTACG CLD_2789 1976423 - 1975545 - | ADP-ribosylglycohydrolase family protein CLD_2788 1976663 - 1977757 + | hypothetical protein TERM 2949 1977778 - 1977824 + T 100 -17.1 -3.79396 | opp_overlap 1977780, overlap 1977780 ATTAAAACAACAATA AAGGAATATCTCAAAATTAAA ATAGA TTTAATTTTGAGATATTCCTC TTATTAATGCTTATT TERM 2950 1977822 - 1977780 - T 100 -19.7 -4.66418 | opp_overlap 1977780 1977778 TAAAACAACAATAAA GGAATATCTCAAAATTAAA ATAGA TTTAATTTTGAGATATTCC TCTTATTAATGCTTA TERM 2951 1977780 - 1977822 + T 100 -19.7 -3.46813 | opp_overlap 1977780, overlap 1977778 TAAAACAACAATAAA GGAATATCTCAAAATTAAA ATAGA TTTAATTTTGAGATATTCC TCTTATTAATGCTTA dacB 1978971 - 1977835 - | D-alanyl-D-alanine carboxypeptidase CLD_2786 1979155 - 1979667 + | hypothetical protein TERM 2952 1979714 - 1979674 - f 70 -5.1 -4.81357 | opp_overlap 1979674 AGAGCATAAAATAAA TTTATTAATGAAATTTTTA ATA TAAAAAATCTATTAATAAA TTATATAAGGAGGTT TERM 2953 1979966 - 1979985 + G 75 -4.3 -5.1861 | overlap 1979961 GGTTCTGGAGCGGGT GTTACTG TAAAAC CAGTAGC TTTTTTAGTAATAAA ytfJ 1979735 - 1980175 + | sporulation protein YtfJ TERM 2954 1980209 - 1980177 - T 95 -10.8 -3.87551 | opp_overlap 1980182, overlap 1980182 ATCATGAAATCTAAA TAAAAGCCCCTA TTACATACT TAGGGGCTTTTA CACTATTTTTTAGTT TERM 2955 1980182 - 1980204 + T 70 -6.3 -4.24338 | opp_overlap 1980182 1980177 GAAATCTAAATAAAA GCCCCTA TTACATACT TAGGGGC TTTTACACTATTTTT TERM 2956 1980204 - 1980182 - T 78 -6.3 -4.96468 | opp_overlap 1980182, overlap 1980177 GAAATCTAAATAAAA GCCCCTA TTACATACT TAGGGGC TTTTACACTATTTTT scpB 1980817 - 1980236 - | segregation and condensation protein B scpA 1981556 - 1980810 - | segregation and condensation protein A CLD_2782 1982121 - 1981531 - | hypothetical protein TERM 2957 1982006 - 1981989 - G 70 -5.7 -4.20769 | opp_overlap 1981977, overlap 1981975 ATATTCTAACATAAA TATTAGA ATAA TCTAATA AAATATTTTCTAATC TERM 2958 1982312 - 1982288 - R 100 -11.6 -4.48299 | opp_overlap 1982288 TCATACTTAAATAAA GCTAACATGA AATAA TCATGTTAGC TTTTATCCTCCTTTT TERM 2959 1982288 - 1982312 + r 100 -11.6 -4.53607 | opp_overlap 1982288 TCATACTTAAATAAA GCTAACATGA AATAA TCATGTTAGC TTTTATCCTCCTTTT dacF 1983569 - 1982346 - | D-alanyl-D-alanine carboxypeptidase CLD_2780 1984414 - 1983692 - | hypothetical protein TERM 2960 1984520 - 1984571 + r 72 -8.4 -3.21998 | gap 1, opp_overlap 1984513 1984518, overlap 1984519 1984528 ATATATTACCTAACG TGTT-AGGACCATTAACCTATTTTA TAT TTAAATATGTTAATGGTCCTTAAGA ATTATTTTAATTTAA TERM 2961 1984528 - 1984562 + r 72 -8.8 -2.74286 | opp_overlap 1984518, overlap 1984520 1984519 CCTAACGTGTTAGGA CCATTAACCTATTTTA TAT TTAAATATGTTAATGG TCCTTAAGAATTATT CLD_2779 1985631 - 1984573 - | endonuclease/exonuclease/phosphatase family protein TERM 2962 1985018 - 1985034 + g 78 -9.5 -3.29263 | AATTCCCTATTATTT TCTAGAG ATA CTCTAGA TTCTAAAAAACATCT TERM 2963 1985728 - 1985704 - R 100 -8.7 -5.52023 | opp_overlap 1985704 ATTATCAATAAAAAA CACAATAAACC TAA AGCTTATTGTG TAAATTTATATTTAT CLD_2778 1986021 - 1985773 - | hypothetical protein TERM 2964 1985984 - 1985996 + g 75 -4.9 -5.08601 | TTCGGGGCAATCTCA TTTCT AGG AGAAA TTTTTATTGCCATAA pdp 1987432 - 1986128 - | pyrimidine-nucleoside phosphorylase TERM 2965 1986853 - 1986867 + g 82 -4.3 -5.58074 | CTAGAACTATGGCAT TAGCT CCTGC AGCTA TTTTTTTGCTCATTA punA 1988533 - 1987718 - | purine nucleoside phosphorylase I, inosine and guanosine-specific xerD 1989446 - 1988571 - | tyrosine recombinase XerD TERM 2966 1989380 - 1989399 + g 81 -3.6 -5.54907 | CTCTTCTATAAGCCT CTAAAGTA TTTT TACTTAAG TTTTTCTTTTGTAAA CLD_2774 1989725 - 1989498 - | hypothetical protein TERM 2967 1989696 - 1989682 - G 73 -3.6 -5.31545 | overlap 1989684 AATAATATTAAAAAA CACTTT ATT AAAGTA ACTATGGCTTTTTTA CLD_2773 1990369 - 1989716 - | putative sporulation protein TERM 2968 1989864 - 1989837 - G 71 -2.1 -5.49568 | gap 1, overlap 1989845 AATGCAAAAGAAAAA GAATAGGAGGTA GCTCT TACC-CATATTC CATTTTGAAATCCCC CLD_2772 1990410 - 1990523 + | hypothetical protein TERM 2969 1990564 - 1990546 - T 78 -6.2 -5.055 | overlap 1990535 CCAATTTTTAAAAAA TATTTTTT ATA AAAAAATA TGAAAATTTTACTAC CLD_2771 1991112 - 1990576 - | NUDIX family hydrolase TERM 2970 1991018 - 1991031 + g 72 -5.3 -4.81523 | TCTCTAAAAGATTCT TTACC ATTT GGTAA TTTTACTTTTTGCTT TERM 2971 1991576 - 1991547 - R 73 -4.4 -5.20216 | opp_overlap 1991547 TAGATCACTAAAAAA TAGAAGGGAT TAAATTTAGT ATCCCCTCTA TTTTTATATAAATTA CLD_2770 1993122 - 1991596 - | amino acid permease family protein TERM 2972 1993479 - 1993517 + r 100 -12.2 -3.86346 | opp_overlap 1993486 TCATCATAATCCTCC CTAATTATTATTTTTTAA TCA TTAATAAATAATAATTAG TTTATAAACAAATAA TERM 2973 1993552 - 1993535 - R 80 -6.3 -5.22481 | opp_overlap 1993535, overlap 1993526 TATAAACAAATAAAA GCTCTAG ATTC CTAAAGC TTTCTTTGTTTGTAA TERM 2974 1993818 - 1993847 + r 100 -15.2 -5.02476 | opp_overlap 1993823 1993826, overlap 1993823 ATATATATTTCCATG CAAAAGAACCCC TTTATT GGGGTTCTTTTG TTTTTTGGGAAGTAT TERM 2975 1993823 - 1993842 + r 100 -9.3 -5.42198 | opp_overlap 1993823 1993826, overlap 1993818 TATTTCCATGCAAAA GAACCCC TTTATT GGGGTTC TTTTGTTTTTTGGGA TERM 2976 1993842 - 1993823 - R 86 -9.3 -4.18494 | opp_overlap 1993818 1993823, overlap 1993826 TATTTCCATGCAAAA GAACCCC TTTATT GGGGTTC TTTTGTTTTTTGGGA CLD_2769 1994692 - 1993937 - | nlpC/P60 family protein TERM 2977 1995097 - 1995107 + r 70 -4 -5.13354 | opp_overlap 1995069, overlap 1995070 TACTGATCTCGTAGC TCTT GTT AAGA TTTGTTTTTTCTCAA CLD_2768 1995294 - 1995166 - | hypothetical protein TERM 2978 1995844 - 1995820 - R 78 -4.2 -5.62045 | opp_overlap 1995820 1995842 1995843 ATATATAATAAAAAA GAGCCCCTAC TATAT ACATGGGCTC CTTTTTATTCAAGAA TERM 2979 1996160 - 1996111 - R 100 -12.8 -3.86015 | gap 1, opp_overlap 1996111 1996118 1996122, overlap 1996118 1996122 TACCTTGTCTACAAA TTGCAAACAAACATAATATATTT GTTTA AAATATATTATGTTTGTT-ACAA CTTAGTAATTTATTA TERM 2980 1996111 - 1996160 + r 81 -10.6 -2.61869 | gap 1, opp_overlap 1996111 1996118 1996122, overlap 1996118 1996122 TACCTTGTCTACAAA TTGCAAACAAACATAATATATTT GTTTA AAATATATTATGTTTGTTA-CAA CTTAGTAATTTATTA TERM 2981 1996154 - 1996118 - R 100 -14.2 -3.74347 | opp_overlap 1996118 1996111 1996122, overlap 1996111 1996122 TCTACAAATTGCAAA CAAACATAATATATTT GTTTA AAATATATTATGTTTG TTACAACTTAGTAAT TERM 2982 1996150 - 1996122 - R 93 -9.2 -4.4784 | opp_overlap 1996118 1996122 1996111, overlap 1996118 1996111 CAAATTGCAAACAAA CATAATATATTT GTTTA AAATATATTATG TTTGTTACAACTTAG TERM 2983 1996122 - 1996150 + r 86 -9.2 -4.183 | opp_overlap 1996118 1996111 1996122, overlap 1996118 1996111 CAAATTGCAAACAAA CATAATATATTT GTTTA AAATATATTATG TTTGTTACAACTTAG CLD_2767 1997317 - 1996739 - | hypothetical protein TERM 2984 1997107 - 1997085 - G 75 -9.2 -3.04263 | opp_overlap 1997085, overlap 1997060 AGTGCAGCTTGAACA TTAGCAGGGA TAC TGCCTGCTAA TATATCTCCAAGTAT TERM 2985 1997085 - 1997107 + g 75 -9.2 -2.99649 | opp_overlap 1997060 1997085 AGTGCAGCTTGAACA TTAGCAGGGA TAC TGCCTGCTAA TATATCTCCAAGTAT CLD_2766 1998247 - 1997570 - | phage integrase family site specific recombinase spo0A 1999330 - 1998509 - | sporulation transcription factor Spo0A TERM 2986 1999472 - 1999434 - R 79 -4.9 -5.53079 | gap 1, opp_overlap 1999437 1999441 1999469, overlap 1999437 1999441 AAAATATATAAAAAA TAATAAAGTGTAAGATAC TCTA ATTTCTTACACTTTA-TA TGGTAACACATATAT TERM 2987 1999470 - 1999437 - R 93 -9.1 -4.78477 | opp_overlap 1999437 1999441 1999469, overlap 1999434 1999441 ATATATAAAAAATAA TAAAGTGTAAGATAC TCTA ATTTCTTACACTTTA TATGGTAACACATAT TERM 2988 1999466 - 1999441 - R 73 -5.5 -4.86216 | opp_overlap 1999441 1999437, overlap 1999437 1999434 ATAAAAAATAATAAA GTGTAAGATAC TCTA ATTTCTTACAC TTTATATGGTAACAC TERM 2989 1999763 - 1999747 - R 77 -3.1 -5.72616 | opp_overlap 1999754, overlap 1999754 ATCTATATAAAAAAA TTAACTA TAA TAATTAA TTATTATCTAATATG spoIVB 2000986 - 1999760 - | stage IV sporulation protein B TERM 2990 2001235 - 2001193 - R 100 -9.4 -5.60993 | opp_overlap 2001194, overlap 2001194 TTTTTCATAAAAAAA GGCTCTAAATAGATTGTGTT ATT AATACAATTTATTTAGAGCT TTTTTTGAATTTTGA TERM 2991 2001234 - 2001194 - R 100 -12.9 -3.95873 | opp_overlap 2001194, overlap 2001193 TTTTCATAAAAAAAG GCTCTAAATAGATTGTGTT ATT AATACAATTTATTTAGAGC TTTTTTTGAATTTTG TERM 2992 2001194 - 2001234 + r 100 -17.3 -5.61824 | opp_overlap 2001194 2001193 TTTTCATAAAAAAAG GCTCTAAATAGATTGTGTT ATT AATACAATTTATTTAGAGC TTTTTTTGAATTTTG metA 2002305 - 2001409 - | homoserine O-succinyltransferase TERM 2993 2001771 - 2001794 + g 100 -9.8 -4.3739 | opp_overlap 2001765 2001774, overlap 2001765 CATCAAAACCTTTAG TAAGTAAAGA ATTT TCTTTACTTA TTTTATGAGGAAATA hom 2003558 - 2002332 - | homoserine dehydrogenase CLD_2761 2004878 - 2003598 - | O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein TERM 2994 2004420 - 2004438 + g 74 -9 -3.37685 | overlap 2004423 ACCAATAGTTTCTCC TAATACCA TTT TGGTATTA TCTTTGGCAAGTTTT TERM 2995 2004961 - 2004942 - R 91 -7.2 -5.52384 | opp_overlap 2004942 TTTGTATTAAAAAAA GCCATTTC GTGA GAAATGAC TTTATTAACAGTTAC recN 2006880 - 2005177 - | DNA repair protein recN TERM 2996 2005677 - 2005667 - G 82 -5.4 -5.40072 | overlap 2005668 2005674 CCGCTTTTAAAAAAA CTAG ATA CTAG ATCTACATTAATTTT TERM 2997 2005914 - 2005930 + g 85 -3.7 -5.76949 | overlap 2005915 ATTCTATAATCTCTT TTATGGT TGT ACCATAC TTTTTTTTAAGAGTA TERM 2998 2005915 - 2005929 + g 75 -7.2 -4.05085 | overlap 2005914 TTCTATAATCTCTTT TATGGT TGT ACCATA CTTTTTTTTAAGAGT TERM 2999 2006769 - 2006753 - G 77 -8.1 -3.76568 | opp_overlap 2006762, overlap 2006762 CCACCTAGAACATAA CTTATAG CAT CTATAAG AATAGATTTACCAGC TERM 3000 2006826 - 2006812 - G 74 -7.2 -3.889 | TGTAAGTACATTAAA TCCTTT ATC AAAGGA TATAGACAATTCTTC argR 2007345 - 2006893 - | arginine repressor ppnK 2008192 - 2007347 - | ATP-NAD kinase CLD_2757 2009013 - 2008192 - | hemolysin A dxs 2010903 - 2009035 - | 1-deoxy-D-xylulose-5-phosphate synthase TERM 3001 2010739 - 2010729 - G 70 -4 -4.87807 | opp_overlap 2010731, overlap 2010731 CGAATACATTAAAAA TACT TAA AGTA AGTTCTACCACTCCT TERM 3002 2010825 - 2010805 - G 80 -7 -4.75372 | opp_overlap 2010801 2010805 ATTATCTATTAAAAA TTCTCTTA TCTCG TAAGAGAA TTGGTTTAACTCATT TERM 3003 2010805 - 2010825 + g 72 -7.7 -3.55524 | opp_overlap 2010805, overlap 2010801 ATTATCTATTAAAAA TTCTCTTAT CTC GTAAGAGAA TTGGTTTAACTCATT CLD_2755 2011473 - 2010904 - | hypothetical protein TERM 3004 2011627 - 2011608 - R 77 -8 -4.17048 | opp_overlap 2011605 TTTCCCGTAAAACAA TCAAAATG TCGC CATTTTGA CGGTTTCCCTTTAAT ispA 2013148 - 2012276 - | geranyltranstransferase xseB 2013488 - 2013273 - | exodeoxyribonuclease VII, small subunit xseA 2014816 - 2013605 - | exodeoxyribonuclease VII, large subunit TERM 3005 2014872 - 2014840 - R 93 -11.5 -3.13403 | opp_overlap 2014846, overlap 2014846 TCCTTTTTATTAATA TTAAAAGTGAAAAGC TAA GCTCTTCACTTTTTA AATATTTATTAATTT TERM 3006 2014846 - 2014866 + r 88 -8.3 -4.7889 | opp_overlap 2014846 2014840 TTATTAATATTAAAA GTGAAAAGC TAA GCTCTTCAC TTTTTAAATATTTAT TERM 3007 2014866 - 2014846 - R 100 -10.5 -4.44797 | opp_overlap 2014846, overlap 2014840 TTATTAATATTAAAA GTGAAAAGC TAA GCTCTTCAC TTTTTAAATATTTAT nusB 2015318 - 2014887 - | N utilization substance protein B TERM 3008 2015176 - 2015186 + g 82 -4 -5.56263 | TCTTTTAAATCTACA GATT CAT AATC TTTTTCTTTTGTAAT TERM 3009 2015446 - 2015426 - R 100 -11.2 -4.12532 | opp_overlap 2015425 2015424 TTCTCTACATAGAAA CACCCTCT ACCTG AGAGGGTG CAATTATTTATTATT asp 2015852 - 2015457 - | alkaline shock protein CLD_2749 2016458 - 2015934 - | stage III sporulation protein AH CLD_2748 2017116 - 2016520 - | stage III sporulation protein AG TERM 3010 2017205 - 2017226 + r 78 -7.5 -4.29176 | opp_overlap 2017197 2017210, overlap 2017210 2017223 TATAATATACTTTTT TAAAATACA TATT TGTATTTTA TTTTAAATTGAATAT spoIIIAF 2017845 - 2017255 - | stage III sporulation protein AF CLD_2746 2019044 - 2017881 - | stage III sporulation protein AE CLD_2745 2019436 - 2019053 - | stage III sporulation protein AD CLD_2744 2019660 - 2019463 - | stage III sporulation protein AC CLD_2743 2020220 - 2019702 - | stage III sporulation protein AB CLD_2742 2021180 - 2020257 - | stage III sporulation protein AA TERM 3011 2021329 - 2021382 + r 93 -7.2 -5.77571 | gap 2, opp_overlap 2021324 2021340, overlap 2021335 2021340 TACCATATAATTTTT TGTATAA--AAAACACCCTATAAGAT TAAA ATCTTATAGGGTGTTTTAATTAATCA TTTTTATTTTTTAAT TERM 3012 2021335 - 2021374 + r 100 -16.8 -2.64827 | opp_overlap 2021324 2021340, overlap 2021329 2021340 ATAATTTTTTGTATA AAAAACACCCTATAAGAT TAAA ATCTTATAGGGTGTTTTA ATTAATCATTTTTAT TERM 3013 2021340 - 2021369 + r 100 -16.7 -4.47217 | opp_overlap 2021340, overlap 2021335 2021329 TTTTTGTATAAAAAA CACCCTATAAGAT TAAA ATCTTATAGGGTG TTTTAATTAATCATT TERM 3014 2021369 - 2021340 - R 100 -16.7 -5.24129 | opp_overlap 2021340 2021335 2021329 TTTTTGTATAAAAAA CACCCTATAAGAT TAAA ATCTTATAGGGTG TTTTAATTAATCATT CLD_2741 2021795 - 2021376 - | hypothetical protein efp 2022393 - 2021836 - | translation elongation factor P aroQ 2022925 - 2022482 - | 3-dehydroquinate dehydratase, type II TERM 3015 2022573 - 2022586 + g 80 -2.4 -5.80248 | ACACCTAAGGAAGCT TCTG CAGTAA CAGA TTTTTTTCTATATTC TERM 3016 2022808 - 2022822 + g 78 -4.4 -5.4387 | TTAAATCTTCATTCT TAAAAT GTA ATTTTA TTTTTTGATTTATAT TERM 3017 2023009 - 2023042 + r 100 -9.2 -5.15634 | opp_overlap 2023041, overlap 2023008 ATCAAAACTTCACTT TATTTGCAAATAAT ATTATG GTTATTTGCAAATA TTTTTTCATAAAATA aroK 2023592 - 2023080 - | shikimate kinase CLD_2737 2024219 - 2023731 - | hypothetical protein CLD_2736 2024671 - 2024225 - | hypothetical protein TERM 3018 2024579 - 2024567 - G 70 -3.5 -5.14563 | opp_overlap 2024567 TGCTTTATTAAAAAA TATAA TAT TTATA GTTAATAGGATAATT CLD_2735 2025376 - 2024687 - | hypothetical protein TERM 3019 2025033 - 2025043 + g 83 -3.2 -5.69023 | GCTATATTTTTGCAC TGCG CCA TGCA TTTTTTTAATATTTT CLD_2734 2025850 - 2025404 - | putative lipoprotein CLD_2733 2026269 - 2025829 - | hypothetical protein TERM 3020 2026250 - 2026236 - G 70 -5.8 -4.28762 | opp_overlap 2026245 2026247, overlap 2026247 ATAATCCTATTAAAA TTTCTA TTA TAGAAA AACCTTTTCTCTTTA CLD_2732 2026712 - 2026266 - | hypothetical protein CLD_2731 2027145 - 2026693 - | hypothetical protein TERM 3021 2027300 - 2027339 + r 100 -14.6 -2.90615 | gap 1, opp_overlap 2027303 2027305, overlap 2027304 2027305 2027307 2027307 CCCACTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 3022 2027336 - 2027303 - R 93 -11.9 -3.20747 | gap 1, opp_overlap 2027300 2027304 2027305 2027307 2027307, overlap 2027305 ACTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAGAAGTC-G TTATCCTTTAGGGGA TERM 3023 2027304 - 2027336 + r 95 -12.1 -3.60151 | opp_overlap 2027303 2027305, overlap 2027300 2027305 2027307 2027307 CTAAAGCTTATTAAC AGACTTCTTAGGAGT TTT ACTCCTTAGAAGTCG TTATCCTTTAGGGGA TERM 3024 2027305 - 2027335 + r 100 -15.6 -2.75769 | opp_overlap 2027303 2027305, overlap 2027304 2027300 2027307 2027307 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3025 2027335 - 2027305 - R 100 -15.6 -3.16288 | opp_overlap 2027305 2027304 2027300 2027307 2027307, overlap 2027303 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3026 2027307 - 2027333 + r 89 -12.4 -2.92144 | opp_overlap 2027305 2027303, overlap 2027305 2027304 2027300 2027307 AAGCTTATTAACAGA CTTCTTAGGAGT TTT ACTCCTTAGAAG TCGTTATCCTTTAGG CLD_2730 2027953 - 2027549 - | putative pilin CLD_2729 2028279 - 2028139 - | general secretion pathway protein TERM 3027 2028549 - 2028529 - R 93 -7.7 -5.24416 | opp_overlap 2028529 TAAGCATAATAAAAA GACTCTAAT TAG ATTAAAGTC TTTTTTAATATTAGT TERM 3028 2028529 - 2028549 + r 81 -5.5 -5.28683 | opp_overlap 2028529 TAAGCATAATAAAAA GACTCTAAT TAG ATTAAAGTC TTTTTTAATATTAGT TERM 3029 2028652 - 2028602 - R 80 -9.5 -3.1319 | gap 1, opp_overlap 2028598 2028609 2028611 2028615, overlap 2028605 2028609 GGAAAACTTAGTTAA TC-ATTAATAGTATCTAATACTTT TTTT AAAGAATTAGTTACTATTAATAGA CCAAGTTCTGAATTA TERM 3030 2028648 - 2028605 - R 85 -11.4 -2.76456 | opp_overlap 2028598 2028609 2028611 2028615, overlap 2028602 2028609 AAACTTAGTTAATCA TTAATAGTATCTAATACTTT TTTT AAAGAATTAGTTACTATTAA TAGACCAAGTTCTGA TERM 3031 2028611 - 2028621 + r 72 -4 -5.41746 | opp_overlap 2028609 2028605 2028602, overlap 2028609 2028615 AGTTAATCATTAATA GTAT CTA ATAC TTTTTTTAAAGAATT CLD_2728 2029293 - 2028598 - | mannitol operon repressor CLD_2727 2030204 - 2029356 - | hypothetical protein CLD_2726 2030698 - 2030237 - | hypothetical protein CLD_2725 2031171 - 2030701 - | hypothetical protein TERM 3032 2030903 - 2030940 + g 79 -9.3 -3.44289 | opp_overlap 2030903 2030901 TAAACCGTACCAATA GCGTTGCAGTTATTTAA TTCA TTTAATACTTGCAACGC TTCATTAAATTTATC TERM 3033 2031106 - 2031154 + g 76 -7.8 -3.99091 | opp_overlap 2031106 2031122, overlap 2031118 TACTATATCATGATA TTTTATTTCAAGGGAACTTAAT ACACA ATTAAGTTCCTTTAAAATTGAA TTATTCCTTTGTTTC TERM 3034 2031118 - 2031142 + g 85 -10.2 -3.67864 | opp_overlap 2031106 2031122, overlap 2031106 ATATTTTATTTCAAG GGAACTTAAT ACACA ATTAAGTTCC TTTAAAATTGAATTA CLD_2724 2031433 - 2031176 - | ribosomal RNA methyltransferase CLD_2723 2031973 - 2031458 - | hypothetical protein CLD_2722 2032472 - 2032098 - | transposase C for TERM 3035 2032412 - 2032426 + g 81 -2.9 -5.80951 | CTTTATCAACCTTCT CTAAA GTCAA TTTAG TTTTTTCTTTTGCAT CLD_2721 2034445 - 2032472 - | integrase TERM 3036 2033059 - 2033075 + g 85 -2.3 -6.01187 | overlap 2033061 AGTGATATAATTTAC CATTAGA ATC TCTAATA TTTTTTTCTTTAATT TERM 3037 2033124 - 2033110 - G 71 -5.8 -4.46073 | opp_overlap 2033089 TTTTAATAGAATAAA CTAAAT TAT ATTTAG GCAACGGTGTACCTT TERM 3038 2033663 - 2033685 + g 77 -8.6 -3.56644 | overlap 2033661 TTTATTCTTGCCTTT TCTATCATTT GTT AAGTGATAGA TATATTTTTCAATAT CLD_2720 2035575 - 2034445 - | site-specific recombinase CLD_2719 2036126 - 2035728 - | general secretion pathway protein CLD_2718 2037800 - 2036271 - | general secretion pathway protein E CLD_2717 2038077 - 2037949 - | hypothetical protein CLD_2716 2039246 - 2038173 - | putative lipoprotein dapF 2040068 - 2039247 - | diaminopimelate epimerase TERM 3039 2041892 - 2041876 - g 80 -8.7 -3.83864 | opp_overlap 2041876 2041875 AAAACTTTAGAAGAA GCTGCCA CCT TAGCAGC CTTTTATAGTAAATC CLD_2714 2040322 - 2042052 + | fibronectin-binding protein truA 2042121 - 2042861 + | tRNA pseudouridine synthase A TERM 3040 2043026 - 2042987 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 2042994, overlap 2042990 2042991 2042993 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTTAGTGAG TERM 3041 2043021 - 2042991 - T 79 -9.8 -2.75769 | opp_overlap 2042994, overlap 2042990 2042987 2042993 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 3042 2042994 - 2043018 + T 90 -10.1 -3.71552 | opp_overlap 2042993 2042991 2042990 2042987 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 3043 2043083 - 2043137 + T 79 -8.3 -4.07772 | opp_overlap 2043085 2043092, overlap 2043085 2043092 ACTCTGTTTATATTT AATAGAAAATACATGTAATAAATGC ATAAA GTGATTATTACATGTATTTTTTATA TTAATTTTTTATTTC TERM 3044 2043085 - 2043135 + T 95 -10.9 -3.5834 | opp_overlap 2043085 2043092, overlap 2043083 2043092 TCTGTTTATATTTAA TAGAAAATACATGTAATAAATGC ATAAA GTGATTATTACATGTATTTTTTA TATTAATTTTTTATT TERM 3045 2043092 - 2043128 + T 88 -6.8 -5.50925 | opp_overlap 2043085 2043092, overlap 2043085 2043083 ATATTTAATAGAAAA TACATGTAATAAATGC ATAAA GTGATTATTACATGTA TTTTTTATATTAATT CLD_2712 2043365 - 2043138 - | hypothetical protein CLD_2711 2043778 - 2043401 - | HIT family protein TERM 3046 2045023 - 2045037 + G 73 -5.6 -4.58685 | TATATTCATGTAGAT GCTGCC TCT GGTGGC TTTTTCACCCCATTT TERM 3047 2045211 - 2045229 + G 73 -8.8 -3.20637 | opp_overlap 2045208 2045223 TGAAGTAAGTTATTT GGGTGGCA AAA TGCCAACC TTAGCTATTAACTTT CLD_2710 2044288 - 2045691 + | glutamate decarboxylase TERM 3048 2045840 - 2045873 + T 84 -9.5 -3.72037 | opp_overlap 2045857 AAAGAGAGTGACAGG CCGGTGGAGAAAACA ATGA TGAAGTCTCCACCGG TTATATAATTTTTAA TERM 3049 2045904 - 2045935 + T 72 -8 -3.62522 | overlap 2045905 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTTCCACTAAAGC TTATTAACAGAATTC TERM 3050 2045940 - 2045979 + T 73 -8.8 -2.90615 | gap 1, opp_overlap 2045948, overlap 2045944 2045945 2045947 TCCACTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 3051 2045945 - 2045975 + T 79 -9.8 -2.75769 | opp_overlap 2045948, overlap 2045944 2045940 2045947 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 3052 2045972 - 2045948 - T 90 -10.1 -3.71552 | opp_overlap 2045947 2045945 2045944 2045940 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 3053 2046078 - 2046032 - T 82 -10.3 -2.91912 | gap 1, opp_overlap 2046043 TTATCCAGGGACATA GCCGCTCT-TTACTCCCATTTT AAAG AAGATGGGAGTATTAGAGCGGG TAGTCATCGGATAAA TERM 3054 2046043 - 2046066 + T 85 -10.4 -3.02144 | opp_overlap 2046032 CATAGCCGCTCTTTA CTCCCATTTT AAAG AAGATGGGAG TATTAGAGCGGGTAG CLD_2709 2046545 - 2046204 - | hypothetical protein TERM 3055 2047047 - 2047069 + r 75 -5.8 -5.08015 | CTAATACTAAATTAC TTTTTAAATT TTA AATTTAGAAA TTTCTTTTTTCAATT CLD_2708 2048759 - 2047050 - | methyl-accepting chemotaxis protein TERM 3056 2047530 - 2047548 + g 80 -8.9 -3.72576 | TGCCTCTCCTGCTCT TGCAGCT TCAAT AGCTGCA TTTAATGCAAGAAGG TERM 3057 2047826 - 2047840 + g 70 -5.6 -4.254 | overlap 2047831 2047836 TTGCTGACATCTCTT CTGCTG AAG CTGCAG TTTCTTGCATATTAG TERM 3058 2049202 - 2049147 - R 100 -15.3 -4.01454 | opp_overlap 2049153, overlap 2049139 2049153 TGAAAAATAATATAA TTAAAATACTGCCTAAAAATAGAAA GCATAA CTTCTATTTTTAGACAGTATTTTTA ATAATAAATTAAGCT TERM 3059 2049196 - 2049153 - R 100 -14.3 -4.57218 | opp_overlap 2049153, overlap 2049147 ATAATATAATTAAAA TACTGCCTAAAAATAGAAA GCATAA CTTCTATTTTTAGACAGTA TTTTTAATAATAAAT TERM 3060 2049153 - 2049196 + r 100 -11.4 -4.77438 | opp_overlap 2049147 2049153 ATAATATAATTAAAA TACTGCCTAAAAATAGAA AGCATAAC TTCTATTTTTAGACAGTA TTTTTAATAATAAAT cloSI 2050803 - 2049229 - | clostripain TERM 3061 2049756 - 2049782 + g 75 -6 -4.76312 | TATTTTCATTGCTTA GATTAATAGCTA AAT TATCTATTGATC TTTTTACATCTTCTA CLD_2706 2051283 - 2051939 + | hypothetical protein CLD_2705 2051941 - 2052642 + | DNA-binding response regulator TERM 3062 2053510 - 2053492 - g 78 -3.2 -5.5074 | opp_overlap 2053492, overlap 2053503 TAAGGGAATAAAAAA TAGTTTTA TAA TTAAACTA TTTAAGTCTATAAAT CLD_2704 2052632 - 2054545 + | sensor histidine kinase TERM 3063 2054735 - 2054686 - T 70 -6 -4.35663 | opp_overlap 2054692, overlap 2054690 2054692 2054695 AATAATATGAATAAA TGAAGATAACTAGATATAAGCA TAAAAG TGCTCTTATCTAGTTATTTTTA AATATATTAACTTTA TERM 3064 2054729 - 2054692 - T 82 -9.4 -3.42564 | opp_overlap 2054692, overlap 2054690 2054686 2054695 ATGAATAAATGAAGA TAACTAGATATAAGCA TAAAAG TGCTCTTATCTAGTTA TTTTTAAATATATTA TERM 3065 2054692 - 2054729 + T 86 -7.9 -4.74453 | opp_overlap 2054692 2054690 2054686 2054695 ATGAATAAATGAAGA TAACTAGATATAAGCAT AAAA GTGCTCTTATCTAGTTA TTTTTAAATATATTA msrA 2055419 - 2054946 - | methionine-S-sulfoxide reductase CLD_2702 2055809 - 2056600 + | response regulator TERM 3066 2056674 - 2056627 - T 93 -9.7 -4.65916 | gap 1, opp_overlap 2056627 2056630 TTGATGCCAATAAAA TACTTAAAAGCTGTAAATAATT ATAGA AATT-TTTACAGCCTTTAAATA TTTTCTAATATAATT CLD_2701 2058220 - 2056760 - | sensor histidine kinase CLD_2700 2058747 - 2058217 - | DNA-binding response regulator CLD_2699 2058966 - 2058838 - | two-component response regulator CLD_2698 2059965 - 2059189 - | hypothetical protein CLD_2697 2060978 - 2060127 - | ABC transporter, permease protein CLD_2696 2061721 - 2060978 - | ABC transporter, ATP-binding protein CLD_2695 2061681 - 2061836 + | hypothetical protein TERM 3067 2061889 - 2061915 + Tr 100 -9.8 -4.72486 | opp_overlap 2061889 2061898 ATAAGTATTTAAAAA TTATAATTATAA AAG TTATAATTATAA TTTTTAGGCTTTATG TERM 3068 2061915 - 2061889 - TR 100 -9.8 -4.71382 | opp_overlap 2061889, overlap 2061898 ATAAGTATTTAAAAA TTATAATTATAA AAG TTATAATTATAA TTTTTAGGCTTTATG TERM 3069 2062020 - 2062055 + Tr 100 -12.2 -5.83211 | opp_overlap 2062020 AGAAAAATAAAAAAA TACAGGTAATAAAC TAGTTAAT GTTTATTACCTGTA TTTTTTATTTTAATA TERM 3070 2062055 - 2062020 - TR 100 -12.2 -6.23317 | opp_overlap 2062020 AGAAAAATAAAAAAA TACAGGTAATAAAC TAGTTAAT GTTTATTACCTGTA TTTTTTATTTTAATA CLD_2694 2064030 - 2062168 - | ABC transporter, ATP-binding/permease protein CLD_2693 2066327 - 2064027 - | putative ABC transporter, ATP-binding/permease protein TERM 3071 2066040 - 2066064 + g 84 -6.6 -5.24796 | opp_overlap 2066040 2066041, overlap 2066041 ATAATCCTTTAAATA TCTTTCTAAA TCATC TTTAGAAAGG TTTTTCTTATCTAAG TERM 3072 2066041 - 2066063 + g 74 -7.9 -3.73793 | opp_overlap 2066040 2066041, overlap 2066040 TAATCCTTTAAATAT CTTTCTAAA TCATC TTTAGAAAG GTTTTTCTTATCTAA TERM 3073 2066296 - 2066282 - G 71 -5.8 -4.43681 | opp_overlap 2066281 GACCTAACACTAAAA TTATTG AAG CAATAA ATGGTTTTAAGTGCT TERM 3074 2066613 - 2066642 + H 100 -11.1 -4.4296 | opp_overlap 2066615 2066618, overlap 2066639 CTTTACCTATGTCAA TATAATAGTTATA CTTT TATAACTATTATA TTTTAATATATATTA TERM 3075 2066640 - 2066615 - H 78 -9.3 -3.06492 | opp_overlap 2066613 2066639, overlap 2066618 TTACCTATGTCAATA TAATAGTTATA CTTT TATAACTATTA TATTTTAATATATAT TERM 3076 2067094 - 2067076 - g 75 -4 -5.20606 | AAAGATCAAGAAAAA TTAATAAA GGC TTTACTAA CAGAAAAAATATCTA CLD_2692 2066743 - 2067186 + | MarR family transcriptional regulator bltD 2067299 - 2067739 + | spermine/spermidine acetyltransferase TERM 3077 2067859 - 2067811 - T 73 -7 -4.07885 | opp_overlap 2067814 2067817, overlap 2067796 2067816 TATTGTTTTTTAAAA CTATATCCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGGTAATTA TTTATAGAATAATTT TERM 3078 2067814 - 2067856 + T 100 -10.9 -4.07877 | opp_overlap 2067796 2067811 2067816, overlap 2067817 TGTTTTTTAAAACTA TATCCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGGTAA TTATTTATAGAATAA TERM 3079 2067854 - 2067816 - T 95 -13.5 -3.09823 | opp_overlap 2067814 2067817, overlap 2067811 TTTTTTAAAACTATA TCCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGGT AATTATTTATAGAAT TERM 3080 2067817 - 2067853 + T 100 -17 -3.07135 | opp_overlap 2067816 2067811, overlap 2067814 TTTTTAAAACTATAT CCCCTTAATTTATTAT ATATA ATAATAAATTAAGGGG TAATTATTTATAGAA moeB 2068651 - 2067968 - | molybdopterin biosynthesis protein MoeB TERM 3081 2068603 - 2068623 + g 71 -3.3 -5.26155 | overlap 2068605 AGTCTTTAAGTTTTT CATTTTCTT CTA AAGAAAGAG TTTTTATATTTCTAT moaD 2068880 - 2068653 - | molybdopterin converting factor subunit 1 aor 2070980 - 2069163 - | aldehyde ferredoxin oxidoreductase, tungsten-containing TERM 3082 2070114 - 2070126 + g 72 -2.7 -5.4505 | GCAGGCTATTGGACA TCTAT AAC ATGGA TTTTTTCTTACAAGA TERM 3083 2071234 - 2071207 - R 75 -8.6 -3.54436 | opp_overlap 2071207 TATATACCTAGATAA GAGCTTAACTTT ATCT AAAGTCAAACTC TCTTCTTTGTATATA aorR 2073294 - 2071399 - | aor transcriptional regulator TERM 3084 2071709 - 2071720 + g 70 -4.4 -4.96996 | opp_overlap 2071709 TCCATATATACAGAA GGTA TTTC TACC TTTCTTTTATTTAAA CLD_2686 2073784 - 2073344 - | MOSC domain-containing protein moaC 2074265 - 2073786 - | molybdenum cofactor biosynthesis protein C moaA 2075228 - 2074269 - | molybdenum cofactor biosynthesis protein A CLD_2683 2077191 - 2075287 - | molybdopterin biosynthesis protein MoeA moeA 2078429 - 2077203 - | molybdopterin biosynthesis enzyme MoeA TERM 3085 2078361 - 2078373 + g 85 -3.5 -5.71712 | TTCTTCCTTTATTGG TTTTA CAT TAAAA TTTTTTTCTATAAGA mog 2078941 - 2078453 - | molybdopterin biosynthesis enzyme Mog tupC 2079835 - 2079143 - | tungstate ABC transporter, ATP-binding protein tupB 2080503 - 2079832 - | tungstate ABC transporter, permease protein TERM 3086 2080399 - 2080378 - G 85 -10.9 -3.10761 | opp_overlap 2080376, overlap 2080376 2080374 2080373 GTTTAATAAAGCACA GGGAATGCC TAAA AGCATTCCC AATATTGAAGCGATT CLD_2678 2081363 - 2080512 - | tungstate ABC transporter, tungstate-binding protein TERM 3087 2081478 - 2081439 - R 100 -11.2 -5.75599 | opp_overlap 2081437 2081446 TAAATTATAAAAAAA TACAAAATATTATATACT CTAC ATTATATAATATTTTGTA CCATTATAACACATT CLD_2677 2082905 - 2081583 - | MATE efflux family protein TERM 3088 2082676 - 2082663 - G 74 -5.3 -5.00616 | TTTTCCCCCAAAAAA TTGTG AAAA CACAA TAGAAGTACCCATGC CLD_2676 2083102 - 2082905 - | hypothetical protein TERM 3089 2083034 - 2083004 - G 70 -8.6 -2.63747 | overlap 2083003 ATTAAATCTCATAAC TTTTTTAACTTC AACATGG GAAGTTAAAAAA TAAGCCTTTTGAGCA TERM 3090 2083161 - 2083183 + r 79 -3.6 -5.6473 | opp_overlap 2083164 2083166 ATAACTTCTACTTCA TAACATAAAA AAG TTTTATATTA TTTTTTTAATATTAT CLD_2675 2083988 - 2083344 - | hypothetical protein CLD_2674 2084981 - 2084310 - | ABC transporter, ATP-binding protein TERM 3091 2084746 - 2084758 + g 78 -6.3 -4.76075 | TATTGGTTTCTATAG TTGGT TAA ACCAA TTTTCTTAATATCCT CLD_2673 2086468 - 2084996 - | ABC transporter, permease protein CLD_2672 2086806 - 2086964 + | hypothetical protein TERM 3092 2087186 - 2087139 - T 79 -7.3 -4.59342 | opp_overlap 2087136 2087140 2087140 2087141, overlap 2087140 2087142 TTTATCATAAATAAA TCACCCCTTTATAGTTAAT TTATTTTGTG ATTAACTATAAAGGGGCAG TTCTTTATTGTTTTA TERM 3093 2087140 - 2087186 + T 75 -6.9 -4.42118 | gap 1, opp_overlap 2087139 2087140 2087142, overlap 2087140 2087136 2087141 TTATCATAAATAAAT C-ACCCCTTTATAGTTAATT TATTTTGT GATTAACTATAAAGGGGCAG TTCTTTATTGTTTTA TERM 3094 2087185 - 2087140 - T 90 -10.8 -3.34882 | opp_overlap 2087140 2087140 2087136 2087141, overlap 2087139 2087142 TTATCATAAATAAAT CACCCCTTTATAGTTAAT TTATTTTGTG ATTAACTATAAAGGGGCA GTTCTTTATTGTTTT TERM 3095 2087141 - 2087184 + T 81 -10.6 -2.51258 | opp_overlap 2087140 2087139 2087142, overlap 2087140 2087140 2087136 TATCATAAATAAATC ACCCCTTTATAGTTAATT TATTTTGT GATTAACTATAAAGGGGC AGTTCTTTATTGTTT TERM 3096 2087183 - 2087142 - T 100 -13.4 -3.23101 | opp_overlap 2087141 2087140 2087140 2087136, overlap 2087140 2087139 ATCATAAATAAATCA CCCCTTTATAGTTAAT TTATTTTGTG ATTAACTATAAAGGGG CAGTTCTTTATTGTT CLD_2671 2089026 - 2087269 - | putative ABC transporter, ATP-binding/permease protein TERM 3097 2088094 - 2088072 - G 71 -4.9 -4.8143 | gap 1 TTAAGAATTCAAAAA CTCTGTGCAC GGCA GC-CACAGAG GACTGTATTGCTGAG CLD_2670 2090753 - 2089023 - | ABC transporter, ATP-binding/permease protein TERM 3098 2090400 - 2090435 + g 74 -6.2 -4.46675 | opp_overlap 2090399, overlap 2090396 2090401 AAGAATAAAAGCATC ATTGGTGGTTCTAGTA ATCA TACTAGATACACCAAA TTTATTATATTCCCT TERM 3099 2090401 - 2090434 + g 80 -9.7 -3.26921 | opp_overlap 2090399, overlap 2090396 2090400 AGAATAAAAGCATCA TTGGTGGTTCTAGTA ATCA TACTAGATACACCAA ATTTATTATATTCCC TERM 3100 2090712 - 2090724 + g 75 -4.9 -5.11613 | opp_overlap 2090712 AATGTTGAAAAATAG GTATA GCT TATAC TTTTTTAAATACTGT TERM 3101 2091589 - 2091605 + G 70 -8.1 -3.07856 | overlap 2091591 ATTGTTTTGGGGGAT TACTCTT TTG AAGAGTA TCTAATTTCTGATAT CLD_2669 2090869 - 2091690 + | ABC transporter CLD_2668 2092109 - 2092735 + | NADPH-dependent FMN reductase TERM 3102 2092738 - 2092772 + F 100 -16 -3.58269 | opp_overlap 2092744, overlap 2092741 2092744 TTTTATACGTTAATC TGAGAAGAGTCAACAA GAA TTGTTGGCTCTTCTTA TTTAGAAATCCCTTC TERM 3103 2092741 - 2092769 + F 100 -15.5 -3.92542 | opp_overlap 2092744, overlap 2092738 2092744 TATACGTTAATCTGA GAAGAGTCAACAA GAA TTGTTGGCTCTTC TTATTTAGAAATCCC TERM 3104 2092766 - 2092744 - f 82 -9.2 -3.36671 | opp_overlap 2092744 2092741 2092738 ACGTTAATCTGAGAA GAGTCAACAA GAA TTGTTGGCTC TTCTTATTTAGAAAT TERM 3105 2092744 - 2092766 + F 100 -11.4 -4.08958 | opp_overlap 2092744, overlap 2092741 2092738 ACGTTAATCTGAGAA GAGTCAACAA GAA TTGTTGGCTC TTCTTATTTAGAAAT TERM 3106 2093815 - 2093795 - f 76 -8.5 -3.78235 | opp_overlap 2093795 TTATAACTAATATAA CTTTATATA ATT TATATAAAG TTTCGAGAAATAATT TERM 3107 2093795 - 2093815 + F 75 -8.5 -3.54919 | opp_overlap 2093795 TTATAACTAATATAA CTTTATATA ATT TATATAAAG TTTCGAGAAATAATT CLD_2667 2093901 - 2094896 + | putative internalin TERM 3108 2094942 - 2094954 + G 74 -6.3 -4.43879 | opp_overlap 2094942 AATCTTTTACCCAAA TTGGT TTT ACCAA TTTTAGTTGCATCAT CLD_2666 2094918 - 2097005 + | carbohydrate binding protein TERM 3109 2097148 - 2097115 - T 72 -6.1 -4.4727 | gap 1, opp_overlap 2097116, overlap 2097116 TTAAGACTTATAAAA GGCAGTGCTAAGT-AT ATT ATAACTTGGCACTGCT TTCTTTCTATATGTT TERM 3110 2097147 - 2097116 - T 80 -9.6 -3.27639 | gap 1, opp_overlap 2097116, overlap 2097115 TAAGACTTATAAAAG GCAGTGCTAAGT-AT ATT ATAACTTGGCACTGC TTTCTTTCTATATGT TERM 3111 2097116 - 2097147 + T 100 -11.8 -4.66625 | gap 1, opp_overlap 2097115 2097116 TAAGACTTATAAAAG GCAGTGCTAAGTATA TTA TA-ACTTGGCACTGC TTTCTTTCTATATGT CLD_2665 2099257 - 2097167 - | sigma-54 dependent transcriptional regulator TERM 3112 2099104 - 2099076 - G 73 -5.9 -4.65032 | overlap 2099078 GAAATCACAAATAAA TCTGCCTTTGGCA ACG TTCCCACGGCAGA CCCGTCACTCACATT TERM 3113 2099560 - 2099531 - R 77 -7.2 -4.50976 | opp_overlap 2099531 2099524, overlap 2099526 CCTTATATGACAAAA GGATGCTGCAAA CGTTTT TATACAGCATCC TTTTTCTTCTCCTCT TERM 3114 2099531 - 2099560 + r 74 -5 -5.2291 | opp_overlap 2099526 2099531, overlap 2099524 CCTTATATGACAAAA GGATGCTGCAAA CGTTTT TATACAGCATCC TTTTTCTTCTCCTCT CLD_2664 2099875 - 2099621 - | hypothetical protein CLD_2663 2100256 - 2099888 - | putative endoribonuclease L-PSP TERM 3115 2099925 - 2099937 + g 85 -7.7 -4.79223 | opp_overlap 2099925 2099923 2099921 ATTTCACATAATACA CCCTT CGG AAGGG TTTTTACTGCTATAC TERM 3116 2100235 - 2100249 + g 71 -5.8 -4.45723 | TAGCTCCTGGCGCTT TTATTG TTT CAATAA TTTTCATGTATTCTT CLD_2662 2101593 - 2100298 - | sodium:dicarboxylate symporter family protein TERM 3117 2100510 - 2100500 - G 70 -5.4 -4.53439 | GGAAATCCAAAGAAA CTGA CAA TCAG CATTTCTCCTACCAG CLD_2661 2102784 - 2101615 - | aminotransferase, classes I and II CLD_2660 2103098 - 2104390 + | hypothetical protein TERM 3118 2104393 - 2104445 + F 100 -9.4 -5.4756 | gap 1, opp_overlap 2104393 2104392, overlap 2104394 CCAGAGGAAGTAAAC TGTGCCCTGTAAGATAGACACAG AAAAGAGG CTGTGT-TAACTTACAGGGTACC TTTTTTCTTCCAATT TERM 3119 2104394 - 2104444 + F 100 -12.9 -3.86909 | gap 1, opp_overlap 2104393 2104392, overlap 2104393 CAGAGGAAGTAAACT GTGCCCTGTAAGATAGACACAG AAAAGAGG CTGTGT-TAACTTACAGGGTAC CTTTTTTCTTCCAAT TERM 3120 2105703 - 2105689 - g 76 -5 -5.04597 | opp_overlap 2105689, overlap 2105683 2105677 AGGTATATATAAAAA TCTAGT TGA ACCAGA TTTTTCAATATAAAA CLD_2659 2104730 - 2105716 + | putative internalin CLD_2658 2105737 - 2107956 + | hypothetical protein TERM 3121 2108001 - 2108036 + T 100 -10.7 -5.26316 | opp_overlap 2108002, overlap 2108002 CGTTGAGCATATGTA AGTAGGTAAATTTGT TCTTAC ACAAATTTACCTACA TTTTTTATAGCATAA TERM 3122 2108035 - 2108002 - T 100 -14.2 -3.14468 | opp_overlap 2108001 2108002 GTTGAGCATATGTAA GTAGGTAAATTTGT TCTTAC ACAAATTTACCTAC ATTTTTTATAGCATA TERM 3123 2108002 - 2108035 + T 100 -14.2 -3.75067 | opp_overlap 2108002, overlap 2108001 GTTGAGCATATGTAA GTAGGTAAATTTGT TCTTAC ACAAATTTACCTAC ATTTTTTATAGCATA CLD_2657 2109596 - 2108157 - | sensor histidine kinase TERM 3124 2108763 - 2108785 + g 80 -6.3 -4.90266 | CATTCCTTCTATTTG CCCCTTTAA AATAG TTATAGGGG TTTTTAATTCATGAG CLD_2656 2110251 - 2109586 - | DNA-binding response regulator TERM 3125 2110543 - 2110491 - R 100 -12.4 -4.22678 | opp_overlap 2110491, overlap 2110478 2110494 TATATTTAACATAAA TAAGGAAGAAGTTGTCTCAAAACA CATTT TATTTTAAAACAACCTCTTCCTTG TTTATATTAGTATTA TERM 3126 2110540 - 2110494 - R 100 -14.1 -4.22375 | opp_overlap 2110491, overlap 2110491 ATTTAACATAAATAA GGAAGAAGTTGTCTCAAAACA CATTT TATTTTAAAACAACCTCTTCC TTGTTTATATTAGTA CLD_2655 2111380 - 2110565 - | hypothetical protein CLD_2654 2112161 - 2111406 - | putative ABC transporter, permease protein CLD_2653 2113610 - 2112177 - | ABC transporter, ATP-binding protein TERM 3127 2112423 - 2112436 + g 71 -4.5 -4.75967 | ATTTATCATCATGCT GGCTG TACT TAGCC TTCTTTTTTGTCCTT CLD_2652 2114179 - 2113613 - | putative ABC transporter, permease protein CLD_2651 2115407 - 2114340 - | alanine racemase domain-containing protein TERM 3128 2114622 - 2114640 + g 73 -3.8 -5.19998 | overlap 2114623 ATCTAATCCTATATT TCCTTCTG GCA TAGAAGGC TTTTCTTTTAATTCT TERM 3129 2116065 - 2116078 + G 72 -2.5 -5.40014 | opp_overlap 2116065, overlap 2116051 2116074 ATATATTTGGAAATA TATTA AATT TAATA TTTTTATTATTCTTT CLD_2650 2115806 - 2116891 + | spore germination protein TERM 3130 2117077 - 2117095 + G 73 -8.8 -3.21034 | opp_overlap 2117078, overlap 2117076 2117078 GCTTATAATATGCAA AGCCTCCA ATA TGGAGGCA GTTTTAATATACATA TERM 3131 2117078 - 2117094 + G 100 -12.3 -2.52138 | opp_overlap 2117078, overlap 2117077 2117076 CTTATAATATGCAAA GCCTCCA ATA TGGAGGC AGTTTTAATATACAT TERM 3132 2117094 - 2117078 - g 100 -12.3 -3.79071 | opp_overlap 2117078 2117077 2117076 CTTATAATATGCAAA GCCTCCA ATA TGGAGGC AGTTTTAATATACAT CLD_2649 2116973 - 2118475 + | spore germination protein CLD_2648 2118462 - 2119553 + | spore germination protein TERM 3133 2120423 - 2120406 - g 70 -3.5 -5.04175 | overlap 2120395 TCAATTATACAAAAA TTTGAAT AATG ATCCAAA GGTATTAAAAAAATT CLD_2647 2119543 - 2120655 + | Ger(x)C family germination protein TERM 3134 2121695 - 2121685 - g 85 -2.6 -5.86332 | CTAATTCAAAAAAAA TTTT AGG AAAA ATAATGCCTATATAT CLD_2646 2120697 - 2121806 + | spore germination protein CLD_2645 2122262 - 2121834 - | hypothetical protein pcaC 2122557 - 2122889 + | 4-carboxymuconolactone decarboxylase TERM 3135 2123547 - 2123528 - g 81 -3.7 -5.56112 | opp_overlap 2123528 ACAAAAACTAAAAAA TGAATAT GGGATA ATATTCA ATAATTTATTTACAA CLD_2643 2122902 - 2123882 + | radical SAM domain-containing protein TERM 3136 2123889 - 2123926 + F 100 -16 -5.23644 | opp_overlap 2123889 ACAGCATAGTAAAAA CCAAAATACAGAATTT TATTAT AAATTCTGTATTTTGG TTTTTATATTTGCTT TERM 3137 2123926 - 2123889 - f 100 -16 -4.83269 | opp_overlap 2123889 ACAGCATAGTAAAAA CCAAAATACAGAATTT TATTAT AAATTCTGTATTTTGG TTTTTATATTTGCTT TERM 3138 2124654 - 2124641 - g 72 -2.5 -5.46706 | ACCTGAAAATAAAAA TATTT ACTT AAATA GAGGAACCATATACT CLD_2642 2124063 - 2124818 + | TPR repeat-containing protein CLD_2641 2126466 - 2125036 - | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 3139 2126086 - 2126074 - G 77 -5.5 -4.90471 | opp_overlap 2126074 ACGCAAAATAGAAAA TACGG AAG CCGCA TCTGTAGAAGAAATA TERM 3140 2127065 - 2127085 + r 74 -8.5 -3.43264 | CACCTACTTCATTAT TTTACAAAT GTT ATTTGTAAA TTCTACTGGATCATT hsp90 2128933 - 2127053 - | heat shock protein CLD_2639 2129478 - 2131043 + | MutS domain-containing protein TERM 3141 2131170 - 2131225 + F 70 -4.2 -5.00616 | opp_overlap 2131178, overlap 2131173 2131176 2131178 2131218 2131220 ATAATTTATTTATAC TATTATAAGGACTTATTTGGGTTTAT TTCT AAAAGCTCGAATAAGTCCTATTATTA TTTTTTACAAGAAAA TERM 3142 2131173 - 2131222 + F 74 -5.9 -4.61482 | opp_overlap 2131178, overlap 2131170 2131176 2131178 2131218 2131220 ATTTATTTATACTAT TATAAGGACTTATTTGGGTTTAT TTCT AAAAGCTCGAATAAGTCCTATTA TTATTTTTTACAAGA TERM 3143 2131176 - 2131219 + F 81 -7.6 -4.40692 | opp_overlap 2131178, overlap 2131173 2131170 2131178 2131218 TATTTATACTATTAT AAGGACTTATTTGGGTTTAT TTCT AAAAGCTCGAATAAGTCCTA TTATTATTTTTTACA TERM 3144 2131178 - 2131217 + F 90 -10.2 -3.78069 | opp_overlap 2131178, overlap 2131176 2131173 2131170 TTTATACTATTATAA GGACTTATTTGGGTTTAT TTCT AAAAGCTCGAATAAGTCC TATTATTATTTTTTA TERM 3145 2131218 - 2131248 + F 70 -5 -4.82855 | overlap 2131176 2131173 2131170 2131220 AGCTCGAATAAGTCC TATTATTATTTTTT ACA AGAAAATAGTAATG TTTTTCCATTTCATA TERM 3146 2132183 - 2132171 - g 76 -6.3 -4.52589 | opp_overlap 2132171 2132170 CTCCTGTAGATAAAA TTCCA GTA TGGAA CTTTGGTTTTGCAAA treP 2131525 - 2132952 + | PTS system, trehalose-specific IIBC component treC 2133055 - 2134722 + | alpha,alpha-phosphotrehalase TERM 3147 2135173 - 2135161 - g 91 -4.9 -5.9218 | opp_overlap 2135148, overlap 2135148 TAGATAATAAAAAAA TTATC TTA GATAA AGACTTTTTTAATAA TERM 3148 2135281 - 2135269 - g 72 -6.3 -4.2231 | AACTAGGACTTAAAA TTAGC TTT GCTAA AAAGGAAATTACAGT treR 2134755 - 2135465 + | trehalose operon repressor CLD_2635 2135449 - 2135568 + | hypothetical protein TERM 3149 2135579 - 2135615 + T 100 -15.5 -4.00684 | opp_overlap 2135596 GATAGGTTTATATTT GCGCCTTTAAAATAA AATTAAA TTATTTTAAAGGCGC TTCTTCCTTTTATAT CLD_2634 2136307 - 2135867 - | PTS system, fructose family, IIA component CLD_2633 2137984 - 2136587 - | PTS system, fructose family, IIBC component CLD_2632 2138908 - 2137985 - | PfkB family kinase CLD_2631 2139788 - 2138928 - | tagatose bisphosphate family class II aldolase TERM 3150 2139973 - 2139950 - R 100 -11.2 -5.63645 | opp_overlap 2139950 TGAAAATACAAAAAA GAGATTTTCA ATAT TGAAAATCTC TTTTCATATAGATTT TERM 3151 2139950 - 2139973 + r 100 -11.2 -4.37534 | opp_overlap 2139950 TGAAAATACAAAAAA GAGATTTTCA ATAT TGAAAATCTC TTTTCATATAGATTT CLD_2630 2140725 - 2139988 - | putative transcriptional regulator TERM 3152 2140419 - 2140439 + g 81 -5.5 -5.2204 | opp_overlap 2140416, overlap 2140416 TTTTCAATAAATTTT CTACAGAAA TAT TTTCTATAG TTTTTGTTACTTCTA CLD_2629 2141214 - 2140807 - | hypothetical protein CLD_2628 2141576 - 2141971 + | endoribonuclease L-PSP family protein TERM 3153 2142046 - 2142015 - T 100 -11 -3.99324 | opp_overlap 2142015 TTCTATTATGAGAAA TGTCCTCACTGTTC TAAA AAACATTGAGGACA TTTTTTCGTTTTAAA TERM 3154 2142015 - 2142046 + T 100 -10.3 -5.46698 | opp_overlap 2142015 TTCTATTATGAGAAA TGTCCTCACTGTT CTAAAA AACATTGAGGACA TTTTTTCGTTTTAAA CLD_2627 2143133 - 2142264 - | radical SAM domain-containing protein TERM 3155 2143435 - 2143463 + r 90 -7.5 -4.9218 | opp_overlap 2143435 TTACTAATTAAAAAG GATGGCTTCTGTA TAA TGCAGAAATCATC TTTTTATAATAAATA CLD_2626 2144538 - 2143540 - | alpha/beta hydrolase domain-containing protein TERM 3156 2144724 - 2144736 + H 77 -3.5 -5.69379 | ACATTAACTCTCTAT TTAAA CTT TTTAA TTTTTTTAATTATAT CLD_2625 2145040 - 2146131 + | glycerol dehydrogenase CLD_2624 2148271 - 2146622 - | methyl-accepting chemotaxis protein TERM 3157 2146675 - 2146720 + g 72 -7.7 -3.67597 | gap 1, opp_overlap 2146699, overlap 2146678 2146699 TATCTGCTAGTTCTG TAAGCTCCT-CGGCAGAAGAGG ATA CTTCTTCTGTAGAAGAAGCTTG TTGTTCCATGGCCGC TERM 3158 2146678 - 2146717 + g 74 -7.2 -3.97307 | gap 1, opp_overlap 2146699, overlap 2146675 2146699 CTGCTAGTTCTGTAA GCTCCT-CGGCAGAAGAGG ATA CTTCTTCTGTAGAAGAAGC TTGTTGTTCCATGGC TERM 3159 2147200 - 2147244 + g 70 -8.1 -3.1789 | opp_overlap 2147212, overlap 2147205 2147210 2147212 TAAGAACACTACCAC TTAATGAAGAAATTCTATCTG TAA CAGATAGAAAGTTTTCTTTAA TGTCTTCTACAGATT TERM 3160 2147205 - 2147239 + g 76 -8 -3.95449 | opp_overlap 2147212, overlap 2147200 2147210 2147212 ACACTACCACTTAAT GAAGAAATTCTATCTG TAA CAGATAGAAAGTTTTC TTTAATGTCTTCTAC TERM 3161 2147210 - 2147234 + g 70 -4.3 -4.98061 | opp_overlap 2147212, overlap 2147205 2147200 2147212 ACCACTTAATGAAGA AATTCTATCTG TAA CAGATAGAAAG TTTTCTTTAATGTCT TERM 3162 2147232 - 2147212 - G 100 -11.3 -4.33621 | opp_overlap 2147212 2147210 2147205 2147200 CACTTAATGAAGAAA TTCTATCTG TAA CAGATAGAA AGTTTTCTTTAATGT TERM 3163 2147212 - 2147232 + g 85 -11.3 -2.73241 | opp_overlap 2147212, overlap 2147210 2147205 2147200 CACTTAATGAAGAAA TTCTATCTG TAA CAGATAGAA AGTTTTCTTTAATGT CLD_2623 2148378 - 2148265 - | hypothetical protein CLD_2622 2149504 - 2148443 - | alanine racemase domain-containing protein TERM 3164 2149821 - 2149853 + r 100 -12.3 -5.80727 | opp_overlap 2149821 AATTCTAATAAAAAA GTTGCCTTAAAAT AGATTTA ATTTTAAGGCAAC TTTTTTATTATTTTT TERM 3165 2149853 - 2149821 - R 100 -12.3 -5.4756 | opp_overlap 2149821 AATTCTAATAAAAAA GTTGCCTTAAAAT AGATTTA ATTTTAAGGCAAC TTTTTTATTATTTTT CLD_2621 2150139 - 2149861 - | hypothetical protein CLD_2620 2150609 - 2151673 + | oxidoreductase family protein TERM 3166 2151880 - 2151825 - T 100 -13.9 -3.53224 | opp_overlap 2151829, overlap 2151827 2151829 TATCCTCTCTTTAAA TACATCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGATTTT TATATTGTTTTTTTA TERM 3167 2151878 - 2151827 - T 100 -16.5 -3.34398 | opp_overlap 2151829, overlap 2151825 2151829 TCCTCTCTTTAAATA CATCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGATT TTTATATTGTTTTTT TERM 3168 2151876 - 2151829 - T 100 -19.1 -3.24232 | opp_overlap 2151829, overlap 2151827 2151825 CTCTCTTTAAATACA TCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGA TTTTTATATTGTTTT TERM 3169 2151829 - 2151876 + T 100 -19.1 -5.25799 | opp_overlap 2151829 2151827 2151825 CTCTCTTTAAATACA TCTATGTGAATATATATTTTA AAACCA TAAAATATATATTCACATAGA TTTTTATATTGTTTT CLD_2619 2152462 - 2151917 - | phosphoribosyl transferase domain-containing protein CLD_2618 2153542 - 2152478 - | xanthine/uracil permease family protein TERM 3170 2153851 - 2153861 + r 70 -4 -5.09762 | ATAATCTTTAGCTTA GAAA TTC TTTC TTTTATTTCTTAAAA TERM 3171 2153973 - 2153951 - R 100 -9.4 -6.09196 | opp_overlap 2153951 TCGAAAATAAAAAAA TTTGTATAAT GAT ATTATACAAA TTTTCAAAGTCTTAT TERM 3172 2153951 - 2153973 + r 86 -9.4 -4.14874 | opp_overlap 2153951 TCGAAAATAAAAAAA TTTGTATAAT GAT ATTATACAAA TTTTCAAAGTCTTAT CLD_2617 2154533 - 2153985 - | GGDEF domain-containing protein CLD_2616 2156071 - 2154767 - | hypothetical protein CLD_2615 2158106 - 2156331 - | putative sigma-54 dependent transcriptional regulator TERM 3173 2158249 - 2158261 + H 72 -4.9 -4.91852 | opp_overlap 2158249 AGTTTTTCAAATGAA GATAA AAC TTATC TTTGTTTTTAATAAA TERM 3174 2158261 - 2158277 + H 76 -4.5 -5.42131 | GAAGATAAAACTTAT CTTTGTT TTT AATAAAG TTTTTTCTATAATTA TERM 3175 2159346 - 2159361 + G 71 -7.6 -3.39327 | opp_overlap 2159345 ATACTCTTGAGGAAG CCCTTT ATAA AAAGGG TTATAACTGTGAAAA TERM 3176 2159723 - 2159670 - g 72 -6.3 -4.27192 | opp_overlap 2159676 2159680 2159687, overlap 2159680 AAATTCCTAGGAAAA CTTTAACAAATTCTAAAGAGGATAA CAAA TAATCCTCTTTAGAATTGATTATAT ATCCATCTCCATACT CLD_2614 2158571 - 2159701 + | DEAD-box ATP dependent DNA helicase TERM 3177 2159676 - 2159717 + F 72 -7.5 -3.61239 | opp_overlap 2159670 2159680, overlap 2159680 2159687 CTAGGAAAACTTTAA CAAATTCTAAAGAGGATAA CAAA TAATCCTCTTTAGAATTGA TTATATATCCATCTC TERM 3178 2159680 - 2159713 + F 95 -12.7 -3.52316 | opp_overlap 2159670 2159680, overlap 2159676 2159687 GAAAACTTTAACAAA TTCTAAAGAGGATAA CAAA TAATCCTCTTTAGAA TTGATTATATATCCA TERM 3179 2159713 - 2159680 - f 100 -12.7 -4.24711 | opp_overlap 2159680 2159676 2159687, overlap 2159670 GAAAACTTTAACAAA TTCTAAAGAGGATAA CAAA TAATCCTCTTTAGAA TTGATTATATATCCA CLD_2613 2160027 - 2160824 + | SCP-like extracellular protein TERM 3180 2160880 - 2160835 - T 100 -17.3 -3.75519 | opp_overlap 2160843 2160846, overlap 2160837 2160839 2160843 2160879 AATAAACATATAGAA CATATAAATAATAGGAACTGC TTTA GCAGTTCCTATTATTTAAATA TAAAATATAGACCTC TERM 3181 2160878 - 2160837 - T 100 -17.7 -3.43689 | opp_overlap 2160843 2160846, overlap 2160835 2160839 2160843 TAAACATATAGAACA TATAAATAATAGGAACTGC TTTA GCAGTTCCTATTATTTAAA TATAAAATATAGACC TERM 3182 2160876 - 2160839 - T 100 -20.3 -3.26989 | opp_overlap 2160843 2160846, overlap 2160837 2160835 2160843 AACATATAGAACATA TAAATAATAGGAACTGC TTTA GCAGTTCCTATTATTTA AATATAAAATATAGA TERM 3183 2160872 - 2160843 - T 100 -16.7 -4.26393 | opp_overlap 2160843 2160846, overlap 2160839 2160837 2160835 TATAGAACATATAAA TAATAGGAACTGC TTTA GCAGTTCCTATTA TTTAAATATAAAATA TERM 3184 2160843 - 2160872 + T 100 -16.7 -3.71378 | opp_overlap 2160839 2160837 2160835 2160843, overlap 2160846 TATAGAACATATAAA TAATAGGAACTGC TTTA GCAGTTCCTATTA TTTAAATATAAAATA TERM 3185 2160846 - 2160869 + T 100 -14 -3.98913 | opp_overlap 2160843 2160839 2160837 2160835, overlap 2160843 AGAACATATAAATAA TAGGAACTGC TTTA GCAGTTCCTA TTATTTAAATATAAA CLD_2612 2162273 - 2160927 - | GntR family transcriptional regulator CLD_2611 2162422 - 2163330 + | hypothetical protein aspB 2164772 - 2163621 - | aspartate aminotransferase TERM 3186 2164199 - 2164213 + g 72 -5 -4.74518 | overlap 2164201 CTAAATCATTTTCTA TGGCTA TTT TAGCTA TTTCTTTTAGTAATT CLD_2609 2165514 - 2164792 - | polar amino acid ABC transporter ATP-binding protein CLD_2608 2166187 - 2165501 - | His/Glu/Gln/Arg/opine ABC transporter permease TERM 3187 2166246 - 2166211 - R 100 -12.2 -4.77165 | opp_overlap 2166212 2166219, overlap 2166212 CCCCTTATAATAAAA TCATAAAAGATAATGA TACT TCATTATCTTTTATGT TTTGAGTGTATTATT TERM 3188 2166212 - 2166245 + r 100 -15.7 -4.28977 | opp_overlap 2166212 2166211, overlap 2166219 CCCTTATAATAAAAT CATAAAAGATAATGA TACT TCATTATCTTTTATG TTTTGAGTGTATTAT TERM 3189 2166245 - 2166212 - R 100 -15.7 -3.45817 | opp_overlap 2166212 2166219, overlap 2166211 CCCTTATAATAAAAT CATAAAAGATAATGA TACT TCATTATCTTTTATG TTTTGAGTGTATTAT TERM 3190 2166219 - 2166238 + r 86 -8 -4.90471 | opp_overlap 2166212 2166211, overlap 2166212 AATAAAATCATAAAA GATAATGA TACT TCATTATC TTTTATGTTTTGAGT CLD_2607 2167075 - 2166257 - | polar amino acid ABC transporter amino acid-binding protein CLD_2606 2168441 - 2167161 - | hypothetical protein TERM 3191 2168642 - 2168614 - R 88 -8.2 -4.87318 | opp_overlap 2168603 TTTAAAATTTAAAAA CCACACTCCAGT TGAAT ACTGAAATGCGG TTTTTAAATAAATAT CLD_2605 2169946 - 2168807 - | aminotransferase, class V TERM 3192 2169976 - 2169998 + r 91 -10.8 -3.51924 | opp_overlap 2169974 2169979, overlap 2169979 CTACTTAAACATATC TAAGTAGAAT TAT ATTCTACTTA TTCTATAACTAAAAG TERM 3193 2169979 - 2169995 + r 78 -8.1 -3.8969 | opp_overlap 2169979 2169974, overlap 2169976 CTTAAACATATCTAA GTAGAAT TAT ATTCTAC TTATTCTATAACTAA TERM 3194 2169995 - 2169979 - R 72 -8.1 -3.21872 | opp_overlap 2169976 2169979, overlap 2169974 CTTAAACATATCTAA GTAGAAT TAT ATTCTAC TTATTCTATAACTAA cat 2170724 - 2170059 - | chloramphenicol acetyltransferase CLD_2603 2171430 - 2171218 - | hypothetical protein TERM 3195 2171534 - 2171524 - R 73 -2.6 -5.72622 | opp_overlap 2171524, overlap 2171517 TTTATAAATAAAAAA TTTA AGC TAAA TATAATAAAAAAATA TERM 3196 2171690 - 2171649 - R 79 -9 -3.7319 | opp_overlap 2171649 2171648 2171646, overlap 2171654 AGTTACAAGACATAA TAAAATCGAAGTAATAGC TTTAAC ACTATAACTCCGATTTTA CTTATTATCCAAACA CLD_2602 2171947 - 2171726 - | hypothetical protein TERM 3197 2172168 - 2172217 + r 73 -5.3 -4.79683 | opp_overlap 2172174 AAATCTTTATATATT TAAAAATAACTAGATATGCGTAT TGCT AGACTAATATCTAGTTATTTTAA TTTATTTTATAAATT CLD_2601 2173325 - 2172693 - | alpha/beta hydrolase CLD_2600 2173779 - 2173624 - | DNA-binding protein CLD_2599 2174099 - 2173962 - | hypothetical protein TERM 3198 2174108 - 2174091 - G 100 -11.3 -4.58395 | opp_overlap 2174090 2174085 TTCATGCTTTAAAAA GGCAGTC AAAT GACTGCC CTTAAATTTCATATA CLD_2598 2175541 - 2174189 - | amino acid/peptide transporter TERM 3199 2175782 - 2175806 + r 70 -7.2 -3.68506 | opp_overlap 2175782, overlap 2175785 AAAGTTATAAAAAAA GAAGCCATTG AAAAA CAATGACTTC TTTAAATAAATATTC TERM 3200 2175806 - 2175782 - R 100 -9.4 -5.68039 | opp_overlap 2175782 2175785 AAAGTTATAAAAAAA GAAGCCATTG AAAAA CAATGACTTC TTTAAATAAATATTC CLD_2597 2177204 - 2175858 - | amino acid/peptide transporter TERM 3201 2177367 - 2177389 + H 72 -3.6 -5.28683 | opp_overlap 2177365 2177370, overlap 2177370 ATAAAGTAAAATCTT AAATTTAAAT TAT ATTTAAATTG TTTTTTAGTATTACT TERM 3202 2177370 - 2177386 + H 71 -5.3 -4.71318 | opp_overlap 2177365 2177370, overlap 2177367 AAGTAAAATCTTAAA TTTAAAT TAT ATTTAAA TTGTTTTTTAGTATT TERM 3203 2177598 - 2177585 - H 82 -2.5 -6.32976 | AAAAAAATAAAAAAA TTAAA AATT TTTAA AAAGGAAAGATTTAA TERM 3204 2178589 - 2178577 - g 72 -7.7 -3.64466 | opp_overlap 2178577 ATTTCACACACAGAA CAGGA CAT TCCTG TGGTTTGGAAGACCA pepQ 2177712 - 2178800 + | proline dipeptidase pepIP 2178881 - 2179762 + | proline iminopeptidase TERM 3205 2179817 - 2179848 + T 100 -13.9 -3.78556 | opp_overlap 2179813 CTTACGCAAATTGCA GAGGGTCTGTCAT TAAAAT ATGACAGACTCTC TTATTAAGTTCTTCT CLD_2594 2180037 - 2179912 - | hypothetical protein CLD_2593 2181547 - 2180054 - | sodium:neurotransmitter symporter family protein TERM 3206 2181502 - 2181514 + g 71 -5.5 -4.386 | AACCAATAGCTGCAA GTAGG AAC CCTGC TTTTGTCCCCCATTG TERM 3207 2181632 - 2181609 - R 87 -6 -5.72622 | opp_overlap 2181620 2181622 TTTATAAATAAAAAA GCCCCACAGT TTAT ACTATGAGAC TTTTTTTACCTAGGA TERM 3208 2181680 - 2181658 - R 100 -12.1 -4.52047 | opp_overlap 2181622 2181620 2181655 2181654 2181658 TAGGATATTACAAAA GTCCCATAG TATAT CTATGGGAC TCCATTTATTTCAAT TERM 3209 2181658 - 2181680 + r 89 -12.1 -2.80991 | opp_overlap 2181658, overlap 2181622 2181620 2181655 2181654 TAGGATATTACAAAA GTCCCATAG TATAT CTATGGGAC TCCATTTATTTCAAT CLD_2592 2182879 - 2181947 - | hypothetical protein TERM 3210 2182020 - 2182039 + g 81 -3.6 -5.62045 | opp_overlap 2182020 TCATCTCCATATAAG TCACCA AATAATAG TGGTGA TTTTTTATTATGTCT CLD_2591 2184370 - 2182976 - | GntR family transcriptional regulator TERM 3211 2185221 - 2185233 + G 72 -6.9 -4.04318 | ACAGAGTAACTATCA GCGGC TCA GCTGC TTTGTACTCTATAGC CLD_2590 2184488 - 2185267 + | PhzF family phenazine biosynthesis protein CLD_2589 2185287 - 2185754 + | endoribonuclease L-PSP family protein TERM 3212 2185788 - 2185810 + T 72 -8.4 -3.22774 | overlap 2185803 TTCTGTAAAGTCATG GGCATCCGTT AAA AACGGGTGGC TTACTCATCCCTATA CLD_2588 2186512 - 2185865 - | hypothetical protein CLD_2587 2189223 - 2186746 - | thrombospondin type 3 repeat-containing protein TERM 3213 2189487 - 2189465 - R 85 -8.5 -4.71482 | AGCAAAGCCCAAAAA GACAGGTAA TAAAT TTACCTGCC TAAAATATCAATATA CLD_2586 2190139 - 2189639 - | nitroreductase family protein CLD_2585 2192187 - 2190244 - | hypothetical protein TERM 3214 2191651 - 2191670 + g 74 -2.2 -5.51165 | AATGATCTTACCTGT TTTTTTCA TATA TGAAACAA TTTTTTTAAAATTTT CLD_2584 2193437 - 2192202 - | hypothetical protein TERM 3215 2192540 - 2192552 + g 74 -6.3 -4.4634 | GTCCTTTATTGCCTA TCACT ATA AGTGA TTTCTTGTTACCATT CLD_2583 2195545 - 2193434 - | hypothetical protein TERM 3216 2194311 - 2194297 - G 71 -5.7 -4.41494 | opp_overlap 2194297 CAGGCTTAATCAAAA CAGGA CCAAC TCCTG TAATATAAGCTGTAT TERM 3217 2195646 - 2195604 - R 93 -11.7 -3.13382 | gap 1, opp_overlap 2195604 2195614, overlap 2195614 TATCAAATGGCAATA TGAATAAAAATCCCGATTTT TTTA AAATTCGGGATTTTTAT-CA TTATCTAACTTTAAA TERM 3218 2195604 - 2195646 + r 95 -11.7 -3.57797 | gap 1, opp_overlap 2195604 2195614, overlap 2195614 TATCAAATGGCAATA TGAATAAAAATCCCGATTTT TTTA AAATTCGGGATTTTTAT-CA TTATCTAACTTTAAA TERM 3219 2195614 - 2195637 + r 91 -8.2 -5.02439 | opp_overlap 2195614 2195604, overlap 2195604 CAATATGAATAAAAA TCCCGATTTT TTTA AAATTCGGGA TTTTTATCATTATCT TERM 3220 2195637 - 2195614 - R 95 -8.2 -5.19251 | opp_overlap 2195604 2195614, overlap 2195604 CAATATGAATAAAAA TCCCGATTTT TTTA AAATTCGGGA TTTTTATCATTATCT CLD_2582 2197460 - 2195667 - | 67 kDa myosin-cross-reactive antigen family protein TERM 3221 2196414 - 2196431 + g 75 -7.1 -4.11295 | CTCCCAATTAGATCT TTCTGTA TCTG TACAGAA TTTATCTGGCTTTCC TERM 3222 2197653 - 2197707 + r 100 -35 -4.62471 | opp_overlap 2197658 2197662 2197666, overlap 2197666 TTTGTGTCTTTTTCA TTAGATAAATAAACTGCGGTGTTCGA AAT TCGAACACCGCAGTTTATTTATCTAA TTTTTAGGCATTGAG TERM 3223 2197702 - 2197658 - R 100 -29.1 -2.78384 | opp_overlap 2197653 2197666, overlap 2197662 2197666 GTCTTTTTCATTAGA TAAATAAACTGCGGTGTTCGA AAT TCGAACACCGCAGTTTATTTA TCTAATTTTTAGGCA TERM 3224 2197698 - 2197662 - R 100 -25.5 -4.08706 | opp_overlap 2197653 2197666, overlap 2197658 2197666 TTTTCATTAGATAAA TAAACTGCGGTGTTCGA AAT TCGAACACCGCAGTTTA TTTATCTAATTTTTA TERM 3225 2197666 - 2197694 + r 100 -21.9 -4.64952 | opp_overlap 2197662 2197658 2197666, overlap 2197653 CATTAGATAAATAAA CTGCGGTGTTCGA AAT TCGAACACCGCAG TTTATTTATCTAATT TERM 3226 2197694 - 2197666 - R 100 -21.9 -4.64048 | opp_overlap 2197666 2197653, overlap 2197662 2197658 CATTAGATAAATAAA CTGCGGTGTTCGA AAT TCGAACACCGCAG TTTATTTATCTAATT CLD_2581 2198334 - 2197765 - | TetR family transcriptional regulator TERM 3227 2198121 - 2198105 - G 82 -7.3 -4.79352 | opp_overlap 2198105 GCAGCTACAATAAAA CTCTCCT CCC AGGAAAG TGTATCATTATATTC CLD_2580 2198789 - 2198496 - | hypothetical protein CLD_2579 2198955 - 2198815 - | site-specific recombinase CLD_2578 2199647 - 2199234 - | hypothetical protein CLD_2577 2199676 - 2200683 + | hypothetical protein TERM 3228 2200761 - 2200786 + T 90 -6.1 -5.88471 | GTATTTAGATATTTA CTGCCCTAAGT TGAA GCTAAGGGTAG TTTTTTTTGCTCATA CLD_2576 2202204 - 2201143 - | hypothetical protein TERM 3229 2201289 - 2201305 + g 79 -9.5 -3.40775 | overlap 2201281 2201280 2201288 TTCCTTCTTCAAGCT CCTTGAA TGT TTCAAGG TATTTCCATGCGAAT CLD_2575 2202892 - 2202248 - | hexapeptide repeat-containing transferase CLD_2574 2204123 - 2202984 - | aminotransferase CLD_2573 2205068 - 2204169 - | hypothetical protein TERM 3230 2206121 - 2206099 - g 82 -10.8 -2.68434 | opp_overlap 2206104, overlap 2206101 2206104 TGCCATAGCAGATGA TACAACTATT ACA AATAGTTGTA TAGGGCCTTATACCT TERM 3231 2206119 - 2206101 - g 71 -9 -2.8844 | opp_overlap 2206104, overlap 2206099 2206104 CCATAGCAGATGATA CAACTATT ACA AATAGTTG TATAGGGCCTTATAC CLD_2572 2205269 - 2206330 + | glucose-1-phosphate thymidylyltransferase TERM 3232 2207271 - 2207259 - g 91 -4.8 -5.83211 | overlap 2207267 CAGTAAAATAAAAAA CCAG TTAAG CTGG GCTTGCAGCTATAAG rfbB 2206372 - 2207352 + | dTDP-glucose 4,6-dehydratase CLD_2570 2207628 - 2207921 + | hypothetical protein TERM 3233 2207969 - 2207934 - f 100 -12 -3.89501 | opp_overlap 2207939 TAAGACTTGTATAAA GGCACGGTTTAATAGG GAAA CCTATTGAACCATACC CTAAACCGATACGTA TERM 3234 2207989 - 2208032 + F 76 -8.3 -3.67634 | gap 2, opp_overlap 2207988 2207989 2207994, overlap 2207988 2208026 ACCGATACGTAAAAG CAAG-AGAGAAGCGTTG-CCC TTAA GGGATAGCGCCTCTCTACTTG TCTTTTGAAGTAGTC CLD_2569 2208172 - 2208465 + | hypothetical protein TERM 3235 2208532 - 2208578 + T 95 -10.4 -4.12599 | gap 3, opp_overlap 2208532 2208533 2208538, overlap 2208533 2208576 AACCGATACGGAAAA G-CAAG-AGAGAGGCGTTG-CCC TCAA GGGATAGCGCCTCTCTACTTGTC TTTTGAAGGCTTATT TERM 3236 2208577 - 2208532 - T 78 -7.6 -4.24606 | gap 1, opp_overlap 2208532 2208533 2208576, overlap 2208533 2208538 AACCGATACGGAAAA GCAAG-AGAGAGGCGTTGCCC TCAAG GGATAGCGCCTCTCTACTTGT CTTTTGAAGGCTTAT TERM 3237 2208533 - 2208576 + T 100 -14.1 -3.6543 | gap 2, opp_overlap 2208533 2208532 2208538, overlap 2208532 ACCGATACGGAAAAG CAAG-AGAGAGGCGTTG-CCC TCAA GGGATAGCGCCTCTCTACTTG TCTTTTGAAGGCTTA TERM 3238 2208576 - 2208533 - T 90 -11.1 -3.1404 | gap 1, opp_overlap 2208532 2208533, overlap 2208532 2208538 ACCGATACGGAAAAG CAAG-AGAGAGGCGTTGCCC TCAAG GGATAGCGCCTCTCTACTTG TCTTTTGAAGGCTTA TERM 3239 2208570 - 2208538 - T 87 -9.8 -3.4243 | opp_overlap 2208533 2208532, overlap 2208533 2208532 TACGGAAAAGCAAGA GAGAGGCGTTGCCC TCAAG GGATAGCGCCTCTC TACTTGTCTTTTGAA CLD_2568 2209123 - 2208596 - | AraC family transcription regulator TERM 3240 2209571 - 2209615 + r 76 -6.1 -4.88293 | gap 2, opp_overlap 2209593 2209596, overlap 2209577 2209578 2209580 GAATTGAAATCATGT CAGATGGGACTCCGAAAAT ACACTACCG ATTTTCGGAGTC--ATCTG TTTATTTTTCAGATT TERM 3241 2209578 - 2209610 + r 81 -10.8 -2.74298 | opp_overlap 2209593 2209596, overlap 2209577 2209571 2209580 AATCATGTCAGATGG GACTCCGAAAAT ACACTACCG ATTTTCGGAGTC ATCTGTTTATTTTTC CLD_2567 2211115 - 2209826 - | lipase TERM 3242 2211136 - 2211171 + r 83 -6.4 -5.18643 | gap 1, opp_overlap 2211136 TGCTCCTTTACATCA TAAATTCTGTAGCC-AG CAG CTAGGCTATATAATTTA TTTTATTTTGATTAA TERM 3243 2211837 - 2211814 - R 100 -8.9 -5.45802 | gap 1 TTCCCAAAATAAAAA GCGGAG-AGC ATCTA GCTTCTCCGC TGGGAACAATAGCTT CLD_2566 2212645 - 2211971 - | vanZF protein TERM 3244 2212976 - 2212946 - R 87 -7 -5.20333 | gap 1, opp_overlap 2212946 TACTTATAATAAAAA GCCCTTGAGTGTA AATAAA TAC-CTCAAGAGC TTTAAAATATTATCA codA 2214266 - 2213001 - | cytosine deaminase TERM 3245 2213825 - 2213810 - G 85 -7.6 -4.73682 | TTGGATAAGATAAAA TTCCCT CTTG AGGGAA AGCTACTATTTGTAT CLD_2564 2215581 - 2214310 - | cytosine permease TERM 3246 2215677 - 2215652 - R 100 -12.1 -5.5112 | TTGATTAATAAAAAA GACCTTTTATA TTTC TATAAAAGGTC GTAAAAATCACTATA CLD_2563 2216057 - 2215926 - | hypothetical protein TERM 3247 2216165 - 2216190 + r 70 -4.1 -5.10767 | gap 1 GCATCAATGCAAAAA TAGCGGGGA-AT TCA ATATTTCCGCTA TTTTTCTCTTCAATA CLD_2562 2217348 - 2216224 - | radical SAM domain-containing protein TERM 3248 2217517 - 2217497 - R 81 -9 -3.88498 | TTTCCACACAGGAAA GCCCTCGA ATATG TCAAGGGC CCCAAATCATTGATA CLD_2561 2217903 - 2217676 - | hypothetical protein CLD_2560 2218375 - 2218202 - | hypothetical protein CLD_2559 2218943 - 2218530 - | hypothetical protein CLD_2558 2219371 - 2218922 - | hypothetical protein TERM 3249 2219047 - 2219065 + g 88 -7.6 -4.93968 | TAAATGAATTTGGTA GTAAATAA TGT TTATTTAC TTTTTCCTTATCAAT TERM 3250 2219426 - 2219450 + r 82 -4.5 -5.77856 | TATATACTCTGTTGA TAAATTTATTA TAT TTATAAATTTA TTTTTTTAGTTTCTT CLD_2557 2219553 - 2219440 - | hypothetical protein TERM 3251 2219537 - 2219560 + g 72 -6.8 -4.05816 | opp_overlap 2219539, overlap 2219539 GGAATTTTAGGAGCA AACTCATTTG GATT CAAATGAGTG TTTCTGATAATTTTA TERM 3252 2219539 - 2219558 + g 81 -9.4 -3.60538 | opp_overlap 2219539, overlap 2219537 AATTTTAGGAGCAAA CTCATTTG GATT CAAATGAG TGTTTCTGATAATTT TERM 3253 2219558 - 2219539 - G 84 -9.4 -3.79519 | opp_overlap 2219537 2219539 AATTTTAGGAGCAAA CTCATTTG GATT CAAATGAG TGTTTCTGATAATTT TERM 3254 2219884 - 2219932 + r 100 -20.1 -5.22312 | overlap 2219886 AATATATTTTATATT CATCTCTTCTTCTGAAATTAGAA TTG TTTTAATTTCAGAAGAAGAGATA TTTTTTCATATAGCT TERM 3255 2219886 - 2219930 + r 100 -22.7 -4.23988 | overlap 2219884 TATATTTTATATTCA TCTCTTCTTCTGAAATTAGAA TTG TTTTAATTTCAGAAGAAGAGA TATTTTTTCATATAG CLD_2556 2220023 - 2219901 - | hypothetical protein CLD_2555 2221841 - 2220174 - | hypothetical protein CLD_2554 2222333 - 2221932 - | viral A-type inclusion repeat-containing protein CLD_2553 2223031 - 2222486 - | ABC transporter, ATP-binding protein-related protein CLD_2552 2223321 - 2223073 - | hypothetical protein CLD_2551 2223618 - 2223475 - | hypothetical protein CLD_2550 2224055 - 2223804 - | glycosyl transferase CLD_2549 2224987 - 2224196 - | type II restriction enzyme MspI (endonuclease MspI)(R.MspI) TERM 3256 2224527 - 2224541 + g 77 -5.7 -4.92777 | AAATTTATTGCACTT GCATC TTGTT GATGC TTTTTCATTAATCTT TERM 3257 2225038 - 2224995 - R 100 -7.9 -5.76633 | gap 2, opp_overlap 2225004, overlap 2225030 TCACACATAAAAAAA CCTCC-TAAT-TGTTATATAA AACA TTATACAACATATTATGGAGG CCTTGCCATAACATT CLD_2548 2226390 - 2225056 - | DNA-cytosine methyltransferase TERM 3258 2225897 - 2225927 + g 90 -7.1 -5.65513 | opp_overlap 2225901 2225904 2225916 TTATTAAATTCATCA GCAATAACATTAA AAACA TTAATGTTATTAC TTTTTTTAGTTAATA TERM 3259 2226472 - 2226443 - R 95 -10.3 -3.98282 | opp_overlap 2226447, overlap 2226447 TGTATACTAATTAAA TAAAGATACCAAT ATAA ATTAGTATCTTTA TCAAACAAACATTCT TERM 3260 2226468 - 2226447 - R 77 -6.7 -4.58308 | opp_overlap 2226447, overlap 2226443 TACTAATTAAATAAA GATACCAAT ATAA ATTAGTATC TTTATCAAACAAACA CLD_2547 2227529 - 2227395 - | hypothetical protein CLD_2546 2227786 - 2227640 - | hypothetical protein CLD_2545 2229000 - 2227945 - | hypothetical protein CLD_2544 2229958 - 2228993 - | hypothetical protein CLD_2543 2230423 - 2230277 - | hypothetical protein CLD_2542 2230670 - 2230533 - | hypothetical protein CLD_2541 2231635 - 2231498 - | hypothetical protein CLD_2540 2232845 - 2231922 - | NAD-dependent epimerase/dehydratase family protein CLD_2539 2233250 - 2234599 + | glycosyl transferase, group 2 family protein CLD_2538 2234627 - 2237248 + | glycosyl transferase, group 2 family protein TERM 3261 2237277 - 2237307 + T 72 -6.2 -4.4267 | opp_overlap 2237276 2237272 2237277, overlap 2237271 AACTATATGAGAAAG TTGACAATGATCAG TTA TTGCACATTGTCAA TTTTCGGTTTTAAGA CLD_2537 2239468 - 2237513 - | putative tetracycline resistance protein TERM 3262 2239899 - 2239871 - R 93 -9.7 -4.37527 | opp_overlap 2239876 2239877, overlap 2239877 TCATAATTATGAAAA CAAAAACTCCCAC TAT GTGAGAGCTTTTA ATTTATTACTCTATT TERM 3263 2239893 - 2239877 - R 100 -8.7 -5.50723 | opp_overlap 2239876 2239877, overlap 2239871 TTATGAAAACAAAAA CTCCCAC TAT GTGAGAG CTTTTAATTTATTAC CLD_2536 2242761 - 2239984 - | enhancing factor TERM 3264 2240536 - 2240558 + g 71 -7.2 -3.78904 | overlap 2240540 ATTAAAGTTTTTACC TAAATAAGGA CTT TCTTTATTTA TTGTTGAATTTGGTA TERM 3265 2242083 - 2242093 + g 70 -4 -4.94992 | CTTTTATAAAATATT TGTT AGG AACA TTTTTATCAGTTTGA TERM 3266 2242739 - 2242723 - G 74 -8.1 -3.64299 | overlap 2242726 TATAGCACAAATGAA TAATGCT TGA AGCATTA AAAATTTTATAAAAC TERM 3267 2243150 - 2243184 + r 84 -8.7 -4.25606 | opp_overlap 2243155, overlap 2243155 TGGAGTTATTTAAAT AAAAACGCCGCTAAA TTATC TTTAGCGACGTTTTC TTATTTTAAATCTTA TERM 3268 2243179 - 2243155 - R 100 -10.8 -5.30616 | opp_overlap 2243150 2243155 TTATTTAAATAAAAA CGCCGCTAAA TTATC TTTAGCGACG TTTTCTTATTTTAAA TERM 3269 2243155 - 2243179 + r 95 -8.6 -5.093 | opp_overlap 2243155, overlap 2243150 TTATTTAAATAAAAA CGCCGCTAAA TTATC TTTAGCGACG TTTTCTTATTTTAAA CLD_2535 2243487 - 2243197 - | microcompartments family protein CLD_2534 2244212 - 2243562 - | propanediol utilization protein PduL-like protein eutE 2245810 - 2244212 - | acetaldehyde dehydrogenase (acetylating) CLD_2532 2246729 - 2245845 - | putative carbon dioxide concentrating mechanism protein CcmK-like protein CLD_2531 2247412 - 2246750 - | ethanolamine utilization protein EutQ-like protein CLD_2530 2247874 - 2247611 - | putative polyhedral organelle formation protein CLD_2529 2248173 - 2247871 - | hypothetical protein CLD_2528 2249096 - 2248251 - | ethanolamine utilization protein EutJ family protein CLD_2527 2249806 - 2249078 - | hypothetical protein CLD_2526 2250259 - 2249813 - | EutP/PduV family GTP-binding protein CLD_2525 2250609 - 2250256 - | ethanolamine utilization protein EutS-like protein CLD_2524 2251602 - 2250649 - | glycyl-radical enzyme activating family protein TERM 3270 2251658 - 2251693 + r 86 -9.2 -4.10781 | overlap 2251659 TATATCTTAATTGGT ATCTGCAATCTACA AAAGAAGC TGTAGATTGCAGAC TTTATATAAATTATT TERM 3271 2251659 - 2251692 + r 93 -12.7 -3.05384 | overlap 2251658 ATATCTTAATTGGTA TCTGCAATCTACA AAAGAAGC TGTAGATTGCAGA CTTTATATAAATTAT CLD_2523 2254288 - 2251748 - | formate acetyltransferase TERM 3272 2252945 - 2252959 + g 77 -5.8 -4.93296 | opp_overlap 2252947 ACGAATAACGTCAAC TATCTT TTT AAGATA TTTTTGTGGTGATGA TERM 3273 2254317 - 2254333 + r 79 -3.8 -5.80951 | overlap 2254306 2254304 ATTCTTTAATGTATT TCATAT ATTAA ATATGA TTTTTTATTTTAAGT CLD_2522 2255831 - 2254338 - | aldehyde dehydrogenase family protein CLD_2521 2256177 - 2255869 - | microcompartments family protein CLD_2520 2256497 - 2256201 - | microcompartments family protein CLD_2519 2256722 - 2256570 - | hypothetical protein CLD_2518 2257067 - 2256801 - | hypothetical protein TERM 3274 2256922 - 2256947 + g 73 -5.5 -4.56978 | overlap 2256920 AGACCATTGGCTTCT GCTGTAAGTAG TGCA TTAATTACAGC TTTCTTGTTTAGAGC CLD_2517 2258166 - 2257054 - | hypothetical protein TERM 3275 2258240 - 2258203 - R 71 -6.7 -4.08846 | opp_overlap 2258197, overlap 2258197 2258232 ATAAAAAATTAATAA TATTATAAATTCATATT GTTA AATAAAAATTTATAATA AATATACATTAAGAT TERM 3276 2258533 - 2258500 - R 95 -12.7 -3.7642 | opp_overlap 2258500 2258506, overlap 2258506 CTTAAGGAATAAATA TAGAAATACCTGGAT AATA ATCCAGGTATTTTTA ATTCTATAAAAACAA TERM 3277 2258500 - 2258533 + r 100 -14.9 -2.68823 | opp_overlap 2258500 2258506, overlap 2258506 CTTAAGGAATAAATA TAGAAATACCTGGAT AATA ATCCAGGTATTTTTA ATTCTATAAAAACAA TERM 3278 2258506 - 2258527 + r 100 -11.7 -4.96646 | opp_overlap 2258500 2258506, overlap 2258500 GAATAAATATAGAAA TACCTGGAT AATA ATCCAGGTA TTTTTAATTCTATAA TERM 3279 2258527 - 2258506 - R 100 -11.7 -4.33576 | opp_overlap 2258506 2258500, overlap 2258500 GAATAAATATAGAAA TACCTGGAT AATA ATCCAGGTA TTTTTAATTCTATAA CLD_2516 2259482 - 2258652 - | MerR family transcriptional regulator TERM 3280 2259587 - 2259566 - R 93 -9.5 -4.70613 | opp_overlap 2259583 2259585 AAAATTTGAACAAAA TACCACCCA TTAA TGAGTGGTA TAAAATATATACTAT CLD_2515 2260741 - 2259599 - | alcohol dehydrogenase, iron-containing TERM 3281 2260840 - 2260852 + H 70 -4.9 -4.77983 | opp_overlap 2260832 2260840 TAACAATCAAACTAA GTTTA TAA TAAAC TTTTCTTAATGTATT TERM 3282 2261172 - 2261218 + H 88 -4.9 -5.90231 | gap 2 TAGCTTATTTCATGA TACTTAAC-TTTATTCCT-TTAG GTC TTAGTAGGAATAAATGTTAGGTA TTTTTTTATGTTTAT CLD_2514 2261254 - 2262567 + | MATE efflux family protein TERM 3283 2262641 - 2262595 - Tf 100 -17 -3.15579 | opp_overlap 2262596 2262601, overlap 2262601 AATAACTCAAAATTA TCAAAACTAACCATCATTATCA CAG TTATAATGATGGTTAGTTTTGT TTTTATTTTACATAG TERM 3284 2262596 - 2262640 + TF 100 -20.5 -5.48213 | opp_overlap 2262595 2262601, overlap 2262601 ATAACTCAAAATTAT CAAAACTAACCATCATTATCA CAG TTATAATGATGGTTAGTTTTG TTTTTATTTTACATA TERM 3285 2262635 - 2262601 - Tf 100 -14.6 -4.42667 | opp_overlap 2262596 2262601, overlap 2262595 TCAAAATTATCAAAA CTAACCATCATTATCA CAG TTATAATGATGGTTAG TTTTGTTTTTATTTT TERM 3286 2262601 - 2262635 + TF 100 -14.6 -5.51078 | opp_overlap 2262601 2262595, overlap 2262596 TCAAAATTATCAAAA CTAACCATCATTATCA CAG TTATAATGATGGTTAG TTTTGTTTTTATTTT CLD_2513 2263908 - 2262664 - | major facilitator transporter TERM 3287 2262974 - 2262964 - Gf 75 -5.4 -4.94222 | AATAATCCATAAAAA CACA AAT TGTG AGCTTCCATAAAGTA TERM 3288 2263845 - 2263833 - Gg 74 -7.7 -3.84639 | opp_overlap 2263830 2263833, overlap 2263821 2263816 TAATACCTATAATAA GCATC AAC GATGC TGATTTACGTACTTT CLD_2512 2263802 - 2263912 + | hypothetical protein CLD_2511 2264638 - 2263949 - | GntR family transcriptional regulator CLD_2510 2264801 - 2265700 + | MarR family transcriptional regulator CLD_2509 2266745 - 2266041 - | hypothetical protein TERM 3289 2266925 - 2266977 + r 77 -7.8 -4.05446 | gap 1, opp_overlap 2266925 2266926 2266928 2266954, overlap 2266926 2266929 TATGTCCCTGGATAA C-GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTCTG TTTATCCTTAGCAGC TERM 3290 2266975 - 2266926 - R 85 -11.5 -2.57211 | opp_overlap 2266925 2266926 2266929, overlap 2266925 2266928 2266954 ATGTCCCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATCCTTAGCA TERM 3291 2266926 - 2266975 + r 95 -11.5 -3.6217 | opp_overlap 2266926 2266925 2266928 2266954, overlap 2266925 2266929 ATGTCCCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAACTC TGTTTATCCTTAGCA TERM 3292 2266929 - 2266972 + r 86 -11.8 -2.62326 | opp_overlap 2266928 2266926 2266925 2266954, overlap 2266926 2266925 TCCCTGGATAACGAT TTCTAAGCTTTAGTGGGAGT AAAA ACTCCCTCTGAAGCCAAGAA CTCTGTTTATCCTTA CLD_2508 2267773 - 2266985 - | hypothetical protein TERM 3293 2268232 - 2268183 - R 79 -8.3 -4.18908 | gap 1, overlap 2268169 2268186 2268192 ATATTGTCAAAACAA TAATTAAAAGCCTCAATCACC-AT TCT ATCGGTAATTAATGCTTTTAATCA ATCATATAATCTATA TERM 3294 2268229 - 2268186 - R 78 -7.8 -4.20868 | gap 1, overlap 2268183 2268192 TTGTCAAAACAATAA TTAAAAGCCTCAATCACC-AT TCT ATCGGTAATTAATGCTTTTAA TCAATCATATAATCT CLD_2507 2268807 - 2268445 - | hypothetical protein CLD_2506 2269308 - 2268820 - | excisionase family DNA-binding protein TERM 3295 2269711 - 2269738 + r 100 -10 -4.46854 | opp_overlap 2269716, overlap 2269716 AACTTATCCATAAGA AAAAACAGCATC CTAA GATGCTGTTTTA TTTATTCTTCACTAA TERM 3296 2269733 - 2269716 - R 100 -9.9 -5.56673 | opp_overlap 2269716 2269711 ATCCATAAGAAAAAA CAGCATC CTAA GATGCTG TTTTATTTATTCTTC TERM 3297 2269716 - 2269733 + r 100 -9.9 -5.18297 | opp_overlap 2269716, overlap 2269711 ATCCATAAGAAAAAA CAGCATC CTAA GATGCTG TTTTATTTATTCTTC CLD_2505 2270374 - 2269736 - | sortase family protein CLD_2504 2272964 - 2270343 - | hypothetical protein TERM 3298 2270955 - 2270974 + gr 70 -7.8 -3.36112 | TCCTGAAGTTACATC GTGCTGGT CTGA ACCTGCAC TTAAGTATTTTTTAA CLD_2503 2274292 - 2273273 - | sensor histidine kinase CLD_2502 2274960 - 2274289 - | DNA-binding response regulator CLD_2501 2276286 - 2275159 - | transposase TERM 3299 2275746 - 2275769 + g 75 -4 -5.32882 | TCCCTAAATCTATTC CTAAACTAAA ATCA TTTAATTTAG TTTTTTCTACTGGTG TERM 3300 2276135 - 2276149 + g 74 -7.2 -4.01101 | TCCTTACCTAATTCT GAAACT GAT AGTTTC TTATTGTTACCTTTA TERM 3301 2276534 - 2276491 - R 93 -9.3 -4.66537 | gap 1, opp_overlap 2276496, overlap 2276493 2276496 CTCCTTAATATAAAA TATAAGGCTATTAAACTTTG GGGAA CAAAATCTAATAGCCTTA-A TCATTATTATAAGAT TERM 3302 2276533 - 2276493 - R 100 -14.4 -3.94773 | opp_overlap 2276496, overlap 2276491 2276496 CCTTAATATAAAATA TAAGGCTATTAAACTTTG GGGAA CAAAATCTAATAGCCTTA ATCATTATTATAAGA TERM 3303 2276530 - 2276496 - R 100 -11.7 -4.08271 | opp_overlap 2276496, overlap 2276493 2276491 TAATATAAAATATAA GGCTATTAAACTTTG GGGAA CAAAATCTAATAGCC TTAATCATTATTATA CLD_2500 2277371 - 2276661 - | hypothetical protein CLD_2499 2279523 - 2277364 - | hypothetical protein TERM 3304 2278279 - 2278269 - G 72 -8.2 -3.31792 | TCACTACTGGCATAA GCCC AGA GGGC ATGGTAAGCTGACAT CLD_2498 2280470 - 2279598 - | ABC transporter, ATP-binding protein TERM 3305 2280359 - 2280376 + g 70 -5.6 -4.33928 | opp_overlap 2280359 CATTAGGTCCTAAAA GTCCAA TAAGAC TTGGAC TTTCTATTTGCAATG CLD_2497 2282524 - 2280530 - | ABC transporter, permease protein TERM 3306 2282731 - 2282757 + r 73 -8 -3.78953 | opp_overlap 2282731 AATGCAACAAAAAAA CCCTCGACTAAT TTA ATTAGCCGAAGG TTTAATGATGAAGGT TERM 3307 2282757 - 2282731 - R 100 -12.4 -5.83226 | opp_overlap 2282731 AATGCAACAAAAAAA CCCTCGACTAAT TTA ATTAGCCGAAGG TTTAATGATGAAGGT CLD_2496 2283917 - 2282832 - | hypothetical protein CLD_2495 2284155 - 2283910 - | hypothetical protein CLD_2494 2284663 - 2284172 - | hypothetical protein TERM 3308 2285141 - 2285111 - R 100 -12 -4.90217 | opp_overlap 2285113 TAAATATATCAAAAA CAGGTAGTCCAATT CAA ACTTAGACTACCTG TATACCTGCAAATAT CLD_2493 2286207 - 2285185 - | zinc-binding dehydrogenase family oxidoreductase CLD_2492 2287149 - 2286292 - | AP endonuclease CLD_2491 2288372 - 2287233 - | putative 3-dehydroquinate synthase TERM 3309 2287466 - 2287487 + g 75 -5.9 -4.78149 | opp_overlap 2287465 TATGCTCCTTAACAT CTTGTTTAC TTAA GTAACCAAG TTTTTCACTTATACG TERM 3310 2288749 - 2288796 + r 73 -6.8 -4.22554 | gap 1, opp_overlap 2288750 2288752 2288755, overlap 2288755 CCTCTCTAACATAAA ATA-TAAGGCTATTAAATTTT AGATAAC AAAATTTAATAGCCTTAATAA TTATTTATTCAATAA TERM 3311 2288795 - 2288750 - R 100 -11 -4.66537 | gap 1, opp_overlap 2288749 2288755, overlap 2288752 2288755 CTCTCTAACATAAAA TA-TAAGGCTATTAAATTTTA GATAA CAAAATTTAATAGCCTTAATA ATTATTTATTCAATA TERM 3312 2288792 - 2288752 - R 100 -15.2 -3.94773 | opp_overlap 2288749 2288755, overlap 2288750 2288755 CTCTAACATAAAATA TAAGGCTATTAAATTTTA GATAA CAAAATTTAATAGCCTTA ATAATTATTTATTCA TERM 3313 2288789 - 2288755 - R 100 -12.5 -4.08271 | opp_overlap 2288755 2288749, overlap 2288752 2288750 TAACATAAAATATAA GGCTATTAAATTTTA GATAA CAAAATTTAATAGCC TTAATAATTATTTAT TERM 3314 2288755 - 2288789 + r 95 -11.8 -3.35961 | opp_overlap 2288752 2288750 2288755, overlap 2288749 TAACATAAAATATAA GGCTATTAAATTTT AGATAAC AAAATTTAATAGCC TTAATAATTATTTAT TERM 3315 2288876 - 2288929 + r 95 -10.5 -3.98083 | opp_overlap 2288878, overlap 2288878 ATAGGTCTCTAGATA AAGATTTCTAAGCTTTAGTATGAGT AAAA ACTCTCTCTGAAGCTTAGAAATCTG TTTATAAATTAAATA TERM 3316 2288878 - 2288927 + r 100 -13.1 -3.57808 | opp_overlap 2288878, overlap 2288876 AGGTCTCTAGATAAA GATTTCTAAGCTTTAGTATGAGT AAAA ACTCTCTCTGAAGCTTAGAAATC TGTTTATAAATTAAA TERM 3317 2288927 - 2288878 - R 100 -13.1 -4.03413 | opp_overlap 2288878 2288876 AGGTCTCTAGATAAA GATTTCTAAGCTTTAGTATGAGT AAAA ACTCTCTCTGAAGCTTAGAAATC TGTTTATAAATTAAA CLD_2490 2290929 - 2288938 - | ABC transporter, permease protein CLD_2489 2291686 - 2290919 - | ABC transporter, ATP-binding protein TERM 3318 2292131 - 2292170 + r 74 -8.8 -2.96873 | gap 1, opp_overlap 2292134 2292136, overlap 2292135 2292136 2292138 CCCATTAAAGCTTAT TAACAGACTTCTTAGGAGT TTT ACTCCTTAAAAGTC-GTTA TCCTTTAGTGGAAAT TERM 3319 2292167 - 2292134 - R 72 -8.3 -3.20747 | gap 1, opp_overlap 2292131 2292135 2292136 2292138, overlap 2292136 ATTAAAGCTTATTAA CAGACTTCTTAGGAGT TTT ACTCCTTAAAAGTC-G TTATCCTTTAGTGGA TERM 3320 2292166 - 2292136 - R 93 -12 -3.16288 | opp_overlap 2292135 2292131 2292136 2292138, overlap 2292134 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAAAAGTC GTTATCCTTTAGTGG TERM 3321 2292136 - 2292166 + r 80 -9.8 -2.77227 | opp_overlap 2292136 2292134, overlap 2292135 2292131 2292138 TAAAGCTTATTAACA GACTTCTTAGGAGT TTT ACTCCTTAAAAGTC GTTATCCTTTAGTGG TERM 3322 2292264 - 2292292 + r 79 -8.9 -3.6608 | opp_overlap 2292269, overlap 2292269 GTAGTCATCGGATAA AAAAAGCCCTCAC ATT GTGATGGCTTTTG TTTAAGTAAACTAAT TERM 3323 2292287 - 2292269 - R 100 -8.8 -5.626 | opp_overlap 2292264 2292269 CATCGGATAAAAAAA GCCCTCAC ATT GTGATGGC TTTTGTTTAAGTAAA TERM 3324 2292269 - 2292287 + r 93 -8.8 -4.90778 | opp_overlap 2292269, overlap 2292264 CATCGGATAAAAAAA GCCCTCAC ATT GTGATGGC TTTTGTTTAAGTAAA TERM 3325 2292374 - 2292363 - R 73 -3 -5.8096 | opp_overlap 2292363 TACAAAAAATAAAAA TTAC TATA GTAA TTTATCTCCTATAGC CLD_2488 2292827 - 2292474 - | hypothetical protein CLD_2487 2293008 - 2293127 + | hypothetical protein TERM 3326 2293108 - 2293136 + T 100 -10.4 -5.39905 | opp_overlap 2293108 2293113, overlap 2293113 TAAATTATTACAAAA CAAAAGCTCCCA GATTA TGAGAGCTTTTG TTTTTATTATTTAAT TERM 3327 2293136 - 2293108 - T 100 -12.6 -4.52703 | opp_overlap 2293108 2293113, overlap 2293113 TAAATTATTACAAAA CAAAAGCTCCCA GATTA TGAGAGCTTTTG TTTTTATTATTTAAT TERM 3328 2293131 - 2293113 - T 83 -6.7 -5.20781 | opp_overlap 2293108 2293113, overlap 2293108 TATTACAAAACAAAA GCTCCCA GATTA TGAGAGC TTTTGTTTTTATTAT TERM 3329 2293113 - 2293131 + T 76 -4.5 -5.44638 | opp_overlap 2293113 2293108, overlap 2293108 TATTACAAAACAAAA GCTCCCA GATTA TGAGAGC TTTTGTTTTTATTAT CLD_2486 2295245 - 2293152 - | PRD domain-containing protein TERM 3330 2294804 - 2294821 + g 76 -6.3 -4.66746 | TTTTTATGCCCTGTC CCTTTGA ACTT TCAAGGG TTATTTTATTTTCTA CLD_2485 2296820 - 2295456 - | PTS system, L-ascorbate family, IIC component CLD_2484 2297117 - 2296833 - | PTS system, L-ascorbate family, IIB component CLD_2483 2297583 - 2297146 - | PTS system, L-ascorbate family, IIA component CLD_2482 2298323 - 2297607 - | transaldolase TERM 3331 2298539 - 2298520 - R 90 -6.5 -5.72053 | opp_overlap 2298520 CAAGCAAATAAAAAA GGATACT GACATT AGTATCC TTCTGTGTGACAATA CLD_2481 2298961 - 2298557 - | hypothetical protein TERM 3332 2298874 - 2298900 + g 80 -9.8 -3.26471 | ATGTTCTGTCTATCT TTTTATATAAAT TAC ATTTATATAAAA TTCCTATGAAAATCA TERM 3333 2299254 - 2299224 - R 100 -10.7 -4.41177 | TACATAAATTTAAAA GGATATTGATAAA ATACA TTCATCAATATCC TAAAAAGTACAATTA CLD_2480 2300032 - 2299298 - | hypothetical protein TERM 3334 2299353 - 2299368 + g 70 -4 -4.92385 | overlap 2299351 CGTGCTTGTGATACT GTTGTT TCAT AACAGC TTTTCTTTAAATATC TERM 3335 2300165 - 2300213 + r 74 -8.6 -3.33483 | gap 1, opp_overlap 2300170 2300179, overlap 2300207 TTTTATCTATCTCCT TTAAATATTAAAAACCTGCCCTA AAAA TA-GACAGGTTTTTAATATTAAA TTAATAATTTACATA TERM 3336 2300208 - 2300170 - R 91 -10.7 -3.53811 | gap 1, opp_overlap 2300165 2300207, overlap 2300179 TCTATCTCCTTTAAA TATTAAAAACCTGCCCTA AAAA TA-GACAGGTTTTTAATA TTAAATTAATAATTT TERM 3337 2300376 - 2300390 + r 70 -7.2 -3.67792 | opp_overlap 2300374 2300376 ATAGATGGGCAAATA TAGCAT CTA ATGCTA TTTAAATACATCTCA CLD_2479 2301203 - 2300709 - | hypothetical protein CLD_2478 2301860 - 2301246 - | O-acetyltransferase family protein CLD_2477 2302184 - 2302537 + | M24 family metallopeptidase CLD_2475 2302853 - 2304259 + | amino acid/peptide transporter CLD_2474 2304743 - 2304363 - | hypothetical protein CLD_2473 2305103 - 2304786 - | hypothetical protein CLD_2472 2306000 - 2305110 - | AraC family transcriptional regulator CLD_2471 2306301 - 2306822 + | hypothetical protein TERM 3338 2306880 - 2306843 - T 100 -13.7 -3.03006 | opp_overlap 2306843, overlap 2306833 AGCAATTTATATAGA CCCCATTAAAAGAAAAT ATTT AACTTCTTTTAATGGGG TTTAAAATTCCAACA TERM 3339 2306843 - 2306880 + T 95 -11.6 -3.66178 | opp_overlap 2306843 2306833 AGCAATTTATATAGA CCCCATTAAAAGAA AATATTTAAC TTCTTTTAATGGGG TTTAAAATTCCAACA TERM 3340 2307268 - 2307220 - T 83 -9.2 -3.5616 | opp_overlap 2307220 2307226, overlap 2307226 TTTAAAAATTCATAA TAAAAACCTATTCTAATCTTTA TATAT CAATGACTAGAATAGGTTTATA AATTTATTATACCTG TERM 3341 2307262 - 2307226 - T 95 -8.2 -5.21236 | opp_overlap 2307220 2307226, overlap 2307220 AATTCATAATAAAAA CCTATTCTAATCTTTA TATAT CAATGACTAGAATAGG TTTATAAATTTATTA TERM 3342 2308766 - 2308751 - T 70 -7.6 -3.32647 | GTTCAACGATAGTAA CAAAGC TATG GCTTTG GCATTAAAAGCAAAT TERM 3343 2309061 - 2309020 - T 74 -9.1 -2.95491 | opp_overlap 2309025, overlap 2309008 2309025 2309046 2309047 AAATTTTATTATAGA TAAAATACGTCAAAAAT AGAATATA ATTTTTGACGTATTTTT GACGTCAAAAGAAGA TERM 3344 2309056 - 2309025 - T 89 -9 -4.62984 | opp_overlap 2309025, overlap 2309020 2309046 2309047 TTATTATAGATAAAA TACGTCAAAAAT AGAATATA ATTTTTGACGTA TTTTTGACGTCAAAA TERM 3345 2309025 - 2309056 + T 89 -9 -4.62069 | opp_overlap 2309025 2309020 2309046 2309047 TTATTATAGATAAAA TACGTCAAAAAT AGAATATA ATTTTTGACGTA TTTTTGACGTCAAAA TERM 3346 2309146 - 2309176 + T 76 -8.5 -3.671 | opp_overlap 2309152, overlap 2309152 AATTTCCTATATTAT AAAAAACTCTAGA AATAA TCTAGAGTTTTTA TTTACAAATTTATTT TERM 3347 2309152 - 2309170 + T 100 -7.5 -5.27938 | opp_overlap 2309152, overlap 2309146 CTATATTATAAAAAA CTCTAGA AATAA TCTAGAG TTTTTATTTACAAAT TERM 3348 2309170 - 2309152 - T 100 -7.5 -5.34555 | opp_overlap 2309152 2309146 CTATATTATAAAAAA CTCTAGA AATAA TCTAGAG TTTTTATTTACAAAT TERM 3349 2309333 - 2309353 + T 72 -4 -5.30616 | ATCTCATACAAAAAA GAACTCTA TTTAT TGGGGTTC TTTTTGTTTAAATAA CLD_2470 2309605 - 2309384 - | hypothetical protein TERM 3350 2309836 - 2309793 - R 75 -7.7 -3.94333 | gap 1, opp_overlap 2309792 2309793 2309805, overlap 2309805 TACCAATATATTAAA TCCGCACAAAAAGAACCC TTTTTATTG GGGTTCTTTTTTTG-GGA GATATGTGTTTAACT TERM 3351 2309805 - 2309825 + r 77 -4.7 -5.41143 | opp_overlap 2309793 2309805, overlap 2309792 2309793 AAATCCGCACAAAAA GAACCCT TTTTATT GGGGTTC TTTTTTTGGGAGATA TERM 3352 2310009 - 2309980 - R 100 -9.4 -5.4505 | opp_overlap 2309983, overlap 2309983 TTTGTCAATAAAAAA GAAGGTAGTTCC AATTAA GGAACTACCTTT TAAATTTAATATCTT TERM 3353 2309983 - 2310006 + r 100 -11.1 -4.38313 | opp_overlap 2309980 2309983 GTCAATAAAAAAGAA GGTAGTTCC AATTAA GGAACTACC TTTTAAATTTAATAT TERM 3354 2310006 - 2309983 - R 100 -11.1 -4.81306 | opp_overlap 2309983, overlap 2309980 GTCAATAAAAAAGAA GGTAGTTCC AATTAA GGAACTACC TTTTAAATTTAATAT CLD_2469 2310788 - 2310015 - | N-acetylmuramoyl-L-alanine amidase TERM 3355 2310065 - 2310041 - G 71 -6.6 -3.98661 | gap 1, opp_overlap 2310028 2310035, overlap 2310043 TATATTTACCATAAA TAT-ATCCTCC ATGT GGAGGATAATA AATGTGTATCCAATC TERM 3356 2310062 - 2310043 - G 90 -10.8 -3.5812 | opp_overlap 2310035, overlap 2310041 TATTTACCATAAATA TATCCTCC ATGT GGAGGATA ATAAATGTGTATCCA TERM 3357 2310168 - 2310183 + g 76 -7.6 -3.99062 | overlap 2310181 GCCTGCTCGTACATT TACACC ACTT GGTGTA TTTATAGTACCTGTT TERM 3358 2310843 - 2310822 - R 72 -3.7 -5.29385 | AATTTAATTAAAAAA GAACAGG TTTTTATT CCTGCTC TTTACTTTCCTTAAC CLD_2468 2311026 - 2310832 - | hypothetical protein TERM 3359 2310928 - 2310910 - G 70 -6.1 -4.11623 | opp_overlap 2310909 2310910 2310912 TATTATCAAAGTAAA TACAGAA AGGAA TTCTGTA CTTGATATACTACCT CLD_2467 2311297 - 2311043 - | hypothetical protein TERM 3360 2311092 - 2311082 - G 93 -5.4 -6.02914 | TGCATATAAAAAAAA GCTT ACT AAGC CTCCTACTGTTAATC TERM 3361 2311349 - 2311336 - H 75 -3.8 -5.48213 | TAGGCAAAATAAAAA GACC CGATAC GGTC CCTATTTTGCCTTTA CLD_2466 2311464 - 2311931 + | hypothetical protein CLD_2465 2312190 - 2312068 - | hypothetical protein CLD_2464 2312548 - 2312183 - | hypothetical protein CLD_2463 2314366 - 2312561 - | putative tail fiber protein CLD_2462 2315530 - 2314373 - | hypothetical protein CLD_2461 2316589 - 2315726 - | phage related protein TERM 3362 2316382 - 2316357 - G 76 -2.7 -5.55664 | gap 1, opp_overlap 2316357 2316368 TTAGGATTAAAAAAA GAGATT-AACTT TTG ACGTTCAATCTC TTTATTCTCTCCCTT CLD_2460 2319194 - 2316579 - | phage protein CLD_2459 2319406 - 2319245 - | hypothetical protein TERM 3363 2319441 - 2319418 - R 100 -10.4 -5.71983 | opp_overlap 2319421 TCAATCATAAAAAAA TAACACCTGG ATTC CCAAGTGTTA TAAATATACTTCCTC CLD_2458 2319933 - 2319439 - | hypothetical protein CLD_2457 2320573 - 2319980 - | putative protein gp15 CLD_2456 2320917 - 2320573 - | hypothetical protein CLD_2455 2320981 - 2321187 + | hypothetical protein CLD_2454 2321428 - 2321204 - | hypothetical protein CLD_2453 2321926 - 2321432 - | hypothetical protein CLD_2452 2322361 - 2321927 - | hypothetical protein CLD_2451 2322702 - 2322358 - | hypothetical protein TERM 3364 2322649 - 2322659 + g 72 -2.6 -5.48787 | TTTATTTAAATATCT TTTT AGT AAAA TTTTTTCTGTCTTAT CLD_2450 2323112 - 2322702 - | hypothetical protein CLD_2449 2323380 - 2323114 - | hypothetical protein CLD_2448 2323555 - 2323370 - | hypothetical protein TERM 3365 2323578 - 2323605 + r 71 -8.6 -3.04575 | opp_overlap 2323579 2323584, overlap 2323584 CCCCCATAAACACAA ATAAAAGGAAGT TTAG ACTTCCTTTTAC TATGCTATTTTATGT TERM 3366 2323604 - 2323579 - R 100 -12.1 -4.40003 | opp_overlap 2323578 2323584, overlap 2323584 CCCCATAAACACAAA TAAAAGGAAGT TTAG ACTTCCTTTTA CTATGCTATTTTATG TERM 3367 2323599 - 2323584 - R 93 -7.6 -5.13648 | opp_overlap 2323584 2323578, overlap 2323579 TAAACACAAATAAAA GGAAGT TTAG ACTTCC TTTTACTATGCTATT TERM 3368 2323584 - 2323599 + r 81 -7.6 -4.38774 | opp_overlap 2323579 2323584, overlap 2323578 TAAACACAAATAAAA GGAAGT TTAG ACTTCC TTTTACTATGCTATT CLD_2447 2324552 - 2323605 - | prophage LambdaCh01, coat protein CLD_2446 2325214 - 2324576 - | hypothetical protein TERM 3369 2325305 - 2325288 - R 80 -6.3 -5.19328 | opp_overlap 2325288 ATGGCATAATAAAAA GCCTTAG TTCC CTAAGAC TTTAATTAGATTATT TERM 3370 2325430 - 2325401 - R 100 -8.1 -5.4251 | opp_overlap 2325377 2325401 TTTATAGATAAAAAA GATTATATCTTCT TTAT ATAAGATATAATC TTTTTCTTTAATTTT TERM 3371 2325401 - 2325430 + r 100 -8.1 -5.43974 | opp_overlap 2325401, overlap 2325377 TTTATAGATAAAAAA GATTATATCTTCT TTAT ATAAGATATAATC TTTTTCTTTAATTTT CLD_2445 2326076 - 2325483 - | hypothetical protein CLD_2444 2327007 - 2326285 - | hypothetical protein CLD_2443 2328284 - 2327007 - | SPP1 family phage portal protein TERM 3372 2327450 - 2327460 + g 78 -4 -5.45652 | overlap 2327442 TATTTTGGATAAATG TATC GTT GATA TTTTTTATTAACCAT TERM 3373 2327875 - 2327842 - G 90 -6.1 -5.626 | opp_overlap 2327841 2327842 2327844 GAGTGCATAAAAAAA GATATGTTACCAAAA TCAT CTATGGTAGCATATC CTTGTGTTGGAGGTA CLD_2442 2330021 - 2328288 - | hypothetical protein TERM 3374 2329222 - 2329204 - G 81 -6 -5.21236 | opp_overlap 2329204, overlap 2329198 AACCTAGAATAAAAA CACTCC TTATGTT GGAGTG TTCCTAATGCAATAA CLD_2441 2330688 - 2330044 - | hypothetical protein TERM 3375 2330146 - 2330164 + g 75 -4 -5.19328 | overlap 2330157 TTTATTTTTAAATTT TATTTTTG TGC TAAAAATA TTTTTATTATAAAAT CLD_2440 2330932 - 2330741 - | hypothetical protein TERM 3376 2331005 - 2330990 - R 83 -6.8 -5.12617 | opp_overlap 2330990 TAAGTATGTAAAAAA GCACCC GTTA AGGTGC TATTCAGTACATATA CLD_2439 2331611 - 2331195 - | hypothetical protein TERM 3377 2331670 - 2331648 - R 100 -9.2 -5.25893 | opp_overlap 2331646 ACACATATTAAAAAA GAGTACCC TTTCTCT GGGTACTC CGTATAATAACATTA CLD_2438 2332210 - 2331731 - | sigma factor TERM 3378 2332431 - 2332412 - R 75 -5.8 -5.03994 | opp_overlap 2332412, overlap 2332396 TGTTACAGATAAAAA CACTTTAT TGTA ACAAAGTG TATTATAAGATATTA CLD_2437 2332696 - 2332517 - | hypothetical protein CLD_2436 2334591 - 2332726 - | phage primase CLD_2435 2336303 - 2334618 - | C-5 cytosine-specific DNA methylase TERM 3379 2336328 - 2336339 + r 70 -4.4 -4.98522 | opp_overlap 2336308 CCTCCTCGTCAGGAG GTGT AGCC ACAC TTTTTATCTAGAATT CLD_2434 2338102 - 2336408 - | phage DNA polymerase CLD_2433 2338271 - 2338113 - | hypothetical protein TERM 3380 2338316 - 2338297 - R 70 -7.1 -3.71848 | opp_overlap 2338296 2338293 TCCTTTTATTAAGAA GGGGAGC TTGTAC ACTCCCC ATCCCTTTTAAACTT CLD_2432 2338782 - 2338324 - | hypothetical protein CLD_2431 2339066 - 2338785 - | hypothetical protein CLD_2430 2340772 - 2339066 - | phage NTP-binding protein TERM 3381 2339770 - 2339782 + g 71 -4.9 -4.7878 | CTACGATTATAGTTT CAAAA TCA TTTTG TTTCTTTTCTAACTC CLD_2429 2340957 - 2340784 - | hypothetical protein CLD_2428 2341766 - 2340963 - | hypothetical protein CLD_2427 2342088 - 2341759 - | hypothetical protein CLD_2426 2342389 - 2342093 - | holliday junction resolvase Hjc CLD_2425 2343216 - 2342389 - | hypothetical protein CLD_2424 2343655 - 2343209 - | hypothetical protein CLD_2423 2344756 - 2343659 - | phage helicase CLD_2422 2344925 - 2344809 - | hypothetical protein CLD_2421 2345086 - 2344916 - | hypothetical protein CLD_2420 2345394 - 2345101 - | hypothetical protein CLD_2419 2346163 - 2345414 - | putative antirepressor TERM 3382 2345960 - 2345987 + g 73 -5.6 -4.60041 | opp_overlap 2345959 TAGGATATATTGAAT TTCTTTGGACGA ACCT TCGTCCACACAA TTTTTACCAATAAGT CLD_2418 2346509 - 2346180 - | hypothetical protein CLD_2417 2346756 - 2346532 - | hypothetical protein CLD_2416 2346978 - 2347427 + | transcriptional regulator CLD_2415 2347477 - 2347893 + | hypothetical protein CLD_2414 2348234 - 2348347 + | hypothetical protein TERM 3383 2348954 - 2348935 - g 80 -6.5 -5.00027 | ACTAAAAATATAAAA GTAGGTA AACCTG TACCTAC TAAGAAAAAAGCTTT TERM 3384 2349196 - 2349186 - g 72 -4 -5.0925 | TGTTAAAAGTAAAAA TTCT AAC AGAA CTATTCCAGTTTCCA CLD_2413 2348452 - 2349516 + | phage integrase family site specific recombinase TERM 3385 2349736 - 2349726 - T 72 -4 -5.28561 | AATACATAATAAAAA CTTA TCC TAAG CCTTACATATCAATG TERM 3386 2350113 - 2350077 - T 83 -6 -5.28561 | opp_overlap 2350077 2350097 2350102 AATACATAATAAAAA CCTATTCTAATCCTTA TATAT CAATGCTTAGAATAGG CTTTGAATTTGAATT TERM 3387 2350209 - 2350235 + T 83 -7.5 -4.57073 | gap 1, opp_overlap 2350209 AGTAAAGAGCAAAAA CTAGATATGGAT ATAA ATCCAT-TCTAG TTTTTCGCAAAAGTG TERM 3388 2350235 - 2350209 - T 90 -7.5 -4.946 | gap 1, opp_overlap 2350209 AGTAAAGAGCAAAAA CTAGATATGGAT ATAA ATCCAT-TCTAG TTTTTCGCAAAAGTG enr 2352251 - 2350254 - | 2-enoate reductase TERM 3389 2350981 - 2350997 + g 73 -8.7 -3.20723 | opp_overlap 2350979 2350981 TTGTGTCCACGAACA GCTGCAA CTC TTGCGGC TTCCATTCCTGCAAC TERM 3390 2351443 - 2351465 + g 78 -9.2 -3.25356 | AGCGCATCATATCCT GCTGCAACAA GCA TTTTTGCAGC TTCAATTCCTTCTGG CLD_2411 2353145 - 2352348 - | MerR family transcriptional regulator TERM 3391 2353160 - 2353180 + r 82 -9.1 -4.1673 | overlap 2353162 TAAATTTCTCCTTTC TGCCTAAAG TCA CTTTAGGTA TTTGTTAAAAGATTA TERM 3392 2353162 - 2353178 + r 84 -9.5 -3.67877 | overlap 2353160 AATTTCTCCTTTCTG CCTAAAG TCA CTTTAGG TATTTGTTAAAAGAT CLD_2410 2353486 - 2353193 - | hypothetical protein TERM 3393 2353663 - 2353627 - R 78 -6.8 -4.87273 | gap 1 AATACGTGACAAAAA CCTATCCT-AAGCATTA AATA TAAAACTTCAGGATAGG CTCATGAATTAGCGT CLD_2409 2353990 - 2353733 - | virion tegument protein CLD_2408 2354920 - 2354000 - | hypothetical protein CLD_2407 2357127 - 2355007 - | hypothetical protein CLD_2406 2357527 - 2357105 - | hypothetical protein CLD_2405 2358945 - 2357545 - | CRISPR-associated RAMP protein TERM 3394 2358281 - 2358295 + g 72 -2.8 -5.36441 | opp_overlap 2358281, overlap 2358282 TTTAAGTTCTTAAAG CCTTTC ATA GAAAGA TTTTTTATATCAAAA CLD_2404 2361253 - 2358938 - | CRISPR-associated RAMP protein TERM 3395 2360807 - 2360830 + g 76 -9 -3.40899 | opp_overlap 2360806 ACCTTTTTTTAACAC TCTAGAAGCT CTTA AGCTTTTAGA TTCTGATACCCCATT CLD_2403 2362931 - 2361255 - | hypothetical protein CLD_2402 2363464 - 2362967 - | hypothetical protein TERM 3396 2363426 - 2363399 - G 91 -10 -4.26871 | TAATCCAGTAATAAA TGTAACTATTGG AGCA CCTATAGTTACA AGACATGAAACTTTG cas6 2364173 - 2363484 - | CRISPR-associated Cas family protein TERM 3397 2364356 - 2364327 - R 100 -11.7 -4.39002 | opp_overlap 2364326 2364332 2364334, overlap 2364332 AAACTTCGCATAAAA TAAAAGCCTTAGA TTAT TCTAAGACTTTTA ATGATTCTTATTATT TERM 3398 2364351 - 2364332 - R 87 -7.2 -5.18371 | opp_overlap 2364326 2364332 2364334, overlap 2364327 TCGCATAAAATAAAA GCCTTAGA TTAT TCTAAGAC TTTTAATGATTCTTA TERM 3399 2364961 - 2364933 - R 72 -4 -5.4505 | gap 1, opp_overlap 2364933 TTGCCCAATAAAAAA TCGCA-AATTCAA TCTC TTGAATAATGCGA TTTTTTACGTTTATT TERM 3400 2364933 - 2364961 + r 70 -4 -5.25805 | gap 1, opp_overlap 2364933 TTGCCCAATAAAAAA TCGCA-AATTCAA TCTC TTGAATAATGCGA TTTTTTACGTTTATT CLD_2400 2365826 - 2364978 - | PhzF family phenazine biosynthesis protein TERM 3401 2366005 - 2365956 - R 100 -14 -3.8046 | opp_overlap 2365967 2365971, overlap 2365957 CGCAAAAATTTCAAA TTGTTCATCAACTAAGAAAG GTAGAAATGT CTTTCTTAGTTGATGAACAC AAACACCATATGCCA TERM 3402 2366004 - 2365957 - R 100 -17.5 -2.87553 | opp_overlap 2365967 2365971, overlap 2365956 GCAAAAATTTCAAAT TGTTCATCAACTAAGAAAG GTAGAAATGT CTTTCTTAGTTGATGAACA CAAACACCATATGCC TERM 3403 2365967 - 2365994 + r 72 -8.6 -3.14132 | opp_overlap 2365957 2365956, overlap 2365971 CAAATTGTTCATCAA CTAAGAAAGGTA GAAA TGTCTTTCTTAG TTGATGAACACAAAC CLD_2399 2367037 - 2366117 - | PhzF family phenazine biosynthesis protein TERM 3404 2367655 - 2367667 + G 71 -7.7 -3.53174 | opp_overlap 2367655 2367654, overlap 2367654 TTTTCAGTGGCAAAT GTCTG TGC CAGAC TATTTATCCCGGTCT CLD_2398 2367362 - 2368855 + | GntR family transcriptional regulator TERM 3405 2368892 - 2368862 - T 93 -7.7 -5.11063 | opp_overlap 2368851 2368851 2368862 ATTATTTAATAAAAA TCAGGACCTAC TTTATCATT GTAAGTCCTGA TTTTTTTAAAATTGT TERM 3406 2368862 - 2368892 + T 82 -5.5 -5.48303 | opp_overlap 2368862, overlap 2368851 2368851 ATTATTTAATAAAAA TCAGGACCTAC TTTATCATT GTAAGTCCTGA TTTTTTTAAAATTGT CLD_2397 2369953 - 2369588 - | glyoxalase family protein TERM 3407 2369768 - 2369779 + g 78 -3 -5.62045 | CCCCTCACTTCGTGA CAAA ACAT TTTG TTTTTTATTATATAT CLD_2396 2370886 - 2370026 - | putative nucleoside-diphosphate-sugar epimerase TERM 3408 2370524 - 2370535 + g 75 -4.4 -5.32882 | ATTTACTAGAAGTTC CTCA ACCT TGAG TTTTTTCTGATGATG CLD_2395 2371415 - 2370909 - | MarR family transcriptional regulator CLD_2394 2371972 - 2372433 + | hypothetical protein TERM 3409 2372482 - 2372460 - Tf 78 -8.4 -3.96827 | opp_overlap 2372462, overlap 2372449 2372462 AAAAGTATTTATAAA GAGCCCTCAC ACT GTGAGAGCTT TTCTTTAAAAATACT TERM 3410 2372480 - 2372462 - Tf 95 -11 -3.56226 | opp_overlap 2372462, overlap 2372460 2372449 AAGTATTTATAAAGA GCCCTCAC ACT GTGAGAGC TTTTCTTTAAAAATA TERM 3411 2372462 - 2372480 + TF 93 -8.8 -4.87803 | opp_overlap 2372462 2372460 2372449 AAGTATTTATAAAGA GCCCTCAC ACT GTGAGAGC TTTTCTTTAAAAATA TERM 3412 2372580 - 2372593 + TF 73 -6.7 -4.31692 | opp_overlap 2372579 AATACCAGTAACATC GCCAT TAAT ATGGC TTTTGCTAATAAGTT CLD_2393 2373724 - 2372678 - | putative lipase/esterase CLD_2392 2373438 - 2373824 + | hypothetical protein CLD_2391 2374142 - 2375041 + | hypothetical protein TERM 3413 2375081 - 2375134 + F 81 -7.7 -4.4388 | opp_overlap 2375082, overlap 2375082 TAAAGAAACTGGATA AGGATTTCTAAGTTTAAGAGAGAAT AAAA ACTTACTCTTAAACTTAAAAATCCG TTTATTAATTTCTAT TERM 3414 2375133 - 2375082 - f 100 -13.4 -3.428 | opp_overlap 2375081 2375082 AAAGAAACTGGATAA GGATTTCTAAGTTTAAGAGAGAAT AAAA ACTTACTCTTAAACTTAAAAATCC GTTTATTAATTTCTA TERM 3415 2375082 - 2375133 + F 90 -11.2 -3.24701 | opp_overlap 2375082, overlap 2375081 AAAGAAACTGGATAA GGATTTCTAAGTTTAAGAGAGAAT AAAA ACTTACTCTTAAACTTAAAAATCC GTTTATTAATTTCTA TERM 3416 2375770 - 2375790 + G 70 -5.6 -4.20074 | opp_overlap 2375772 GGATTATGGCCGCAA TATATATG ATAGG CATATATA TTTTAAACTATATTT CLD_2390 2375382 - 2376704 + | proton-linked D-serine/D-alanine/glycine symporter TERM 3417 2376750 - 2376715 - T 90 -10.7 -3.41025 | opp_overlap 2376713 2376712, overlap 2376713 AATAAATTAAATAGA GTGTGTCAAAATAGA CTTAAT TTTATTTTGACACAC AACCTTACTTTAAAC CLD_2389 2377506 - 2376772 - | protein kinase domain-containing protein TERM 3418 2377581 - 2377619 + r 81 -5.5 -5.31877 | opp_overlap 2377581 2377584 TGAAGAAAATACAGA CATCATAGATCCAAA AAATCCTGA TTTTGATCTATGGTG TTTTTTATAATAACT hgdC 2378782 - 2378009 - | 2-hydroxyglutaryl-CoA dehydratase component A TERM 3419 2378062 - 2378077 + g 70 -5.4 -4.57353 | overlap 2378056 ATGCTCCAGTTAGTT GTGCTA ATTC TGGCAC TTTTATATCATGGCC TERM 3420 2378593 - 2378604 + g 71 -2.2 -5.43414 | GAATTCTACCATAAC CTGT AACT ACGG TTTTTTCTATATCCT CLD_2387 2380386 - 2378872 - | hypothetical protein TERM 3421 2380585 - 2380623 + r 100 -11.3 -3.9712 | gap 1, opp_overlap 2380585 ATTTCTTTATAATAA CCTCCCTGATTCTAATAT CTTT AAATTAGAAT-AGGGAGG TTTATAATAAAATAC TERM 3422 2380623 - 2380585 - R 95 -11.3 -3.79113 | gap 1, opp_overlap 2380585 ATTTCTTTATAATAA CCTCCCTGATTCTAATAT CTTT AAATTAGAAT-AGGGAGG TTTATAATAAAATAC CLD_2386 2381736 - 2380687 - | electron transfer flavoprotein, alpha subunit/FixB family protein CLD_2385 2382540 - 2381755 - | electron transfer flavoprotein, beta subunit/FixA family protein CLD_2384 2383712 - 2382579 - | acyl-CoA dehydrogenase family protein TERM 3423 2383241 - 2383255 + g 70 -3.6 -5.16151 | opp_overlap 2383228 AGTCACAAATAGGTG CATTTG TAA TAAATG TTTTTCTTCCATTTA CLD_2383 2385338 - 2384211 - | putative R-2-hydroxyglutaryl-CoA dehydratase, beta subunit CLD_2382 2386570 - 2385338 - | putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit TERM 3424 2386367 - 2386391 + g 74 -6.4 -4.45485 | overlap 2386371 AGATAAAGATTCTTT CTTAGCTGCA ACCCC TGCAGCTTGG TTTTCTGGATATAAT TERM 3425 2386371 - 2386387 + g 74 -8 -3.76186 | overlap 2386367 AAAGATTCTTTCTTA GCTGCA ACCCC TGCAGC TTGGTTTTCTGGATA CLD_2381 2387847 - 2386633 - | putative hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase TERM 3426 2388290 - 2388302 + H 73 -3.5 -5.47914 | opp_overlap 2388290, overlap 2388295 2388297 TTAAAAAAAGTACAA TTTTT CTT AAAAA TTTTTTATGCTTTTT CLD_2379 2388309 - 2388446 + | hypothetical protein CLD_2380 2389256 - 2388435 - | iron-sulfur cluster-binding protein TERM 3427 2388897 - 2388885 - G 76 -7.7 -3.92075 | ATGTTCACCTATAAA TGCAG CCC CTGCA ACAACTTTAAAACCA TERM 3428 2389992 - 2389976 - g 75 -4.5 -5.04987 | overlap 2389979 AATACCTTGAAAAAA TATGCAT GAA ATACATA CTAGAGCCCCTTAAG CLD_2378 2389816 - 2391087 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit TERM 3429 2391674 - 2391635 - g 100 -9.6 -4.51378 | opp_overlap 2391645, overlap 2391636 ATGTACAGGAGAAAA TTTCATATTAGACAAATC ACCG GATTTTTCTAATATGAAT GAACTGATTTTATGG TERM 3430 2391673 - 2391636 - g 100 -13.1 -3.30104 | opp_overlap 2391645, overlap 2391635 TGTACAGGAGAAAAT TTCATATTAGACAAATC ACCG GATTTTTCTAATATGAA TGAACTGATTTTATG TERM 3431 2391867 - 2391850 - g 71 -2.1 -5.34655 | CAATTAAAAAGAAAA TTAATAT TCCC ATACTAA AGATTGAAACTGATT CLD_2377 2391090 - 2392784 + | putative R-2-hydroxyglutaryl-CoA dehydratase subunit/putative R-2-hydroxyglutaryl-CoA dehydratase activase CLD_2376 2394234 - 2393083 - | putative methyl-accepting chemotaxis protein TERM 3432 2393392 - 2393414 + g 70 -6.4 -4.06905 | opp_overlap 2393408 CTTTGTTTCATCAGC TATCTCCTTT ATA AAAGAAGATA TTTCATTAATTTCTT TERM 3433 2394829 - 2394781 - R 100 -15.7 -3.69332 | opp_overlap 2394781 2394784, overlap 2394789 2394792 TAAGAATATTTTAAA TGCTAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTATTA TTTTAACTATTTAAT TERM 3434 2394781 - 2394829 + r 100 -15.7 -4.32903 | opp_overlap 2394781 2394789 2394792, overlap 2394784 TAAGAATATTTTAAA TGCTAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTATTA TTTTAACTATTTAAT TERM 3435 2394784 - 2394826 + r 100 -19.6 -4.2651 | opp_overlap 2394781 2394789 2394792, overlap 2394781 GAATATTTTAAATGC TAATATAATTAAGCTCCCAC AAT GTGAGAGCTTAATTATATTA TTATTTTAACTATTT TERM 3436 2394821 - 2394789 - R 100 -17.3 -3.12668 | opp_overlap 2394784 2394781, overlap 2394781 2394792 TTTTAAATGCTAATA TAATTAAGCTCCCAC AAT GTGAGAGCTTAATTA TATTATTATTTTAAC TERM 3437 2394818 - 2394792 - R 100 -14.6 -3.7014 | opp_overlap 2394784 2394781, overlap 2394789 2394781 TAAATGCTAATATAA TTAAGCTCCCAC AAT GTGAGAGCTTAA TTATATTATTATTTT CLD_2375 2395435 - 2394836 - | hypothetical protein TERM 3438 2395819 - 2395780 - R 75 -9.7 -2.62616 | opp_overlap 2395778 2395780 2395787, overlap 2395787 CTACTGGCTACACTA TAAAAAACTATCTCAAA ATTTAA TTTAAGATAGTCTTTTA TGTTATTAATTTATG TERM 3439 2395812 - 2395787 - R 81 -5.6 -5.34555 | opp_overlap 2395780 2395778 2395787, overlap 2395780 CTACACTATAAAAAA CTATCTCAAA ATTTAA TTTAAGATAG TCTTTTATGTTATTA CLD_2374 2396814 - 2395825 - | linear amide C-N hydrolase TERM 3440 2396898 - 2396930 + r 76 -8.1 -3.81447 | opp_overlap 2396902 2396916 2396927, overlap 2396902 2396927 2396929 ATGCGATTATCCTTT TAAATATTATTTTTA CAA TAAACATAATATTTA TTCTTGTAGAATATA TERM 3441 2397012 - 2397064 + r 100 -12.4 -4.67048 | opp_overlap 2397008 2397018, overlap 2397018 AAATTAAAAAATTTA TAAAAACAAAGTGTAAAAGAGC CCATTATAA GCTCTTTTACACTTTGTTTAGA TTTATTTTGGAATAA TERM 3442 2397018 - 2397058 + r 100 -15.8 -3.98952 | opp_overlap 2397018 2397008, overlap 2397012 AAAAATTTATAAAAA CAAAGTGTAAAAGAGC CCATTATAA GCTCTTTTACACTTTG TTTAGATTTATTTTG TERM 3443 2397058 - 2397018 - R 100 -20.1 -4.98758 | opp_overlap 2397012 2397018, overlap 2397008 AAAAATTTATAAAAA CAAAGTGTAAAAGAGCCCA TTA TAAGCTCTTTTACACTTTG TTTAGATTTATTTTG CLD_2373 2397674 - 2397081 - | acetyltransferase CLD_2372 2398019 - 2398432 + | putative fosfomycin resistance protein TERM 3444 2398501 - 2398472 - T 95 -10.9 -3.53779 | opp_overlap 2398470 2398469 2398477 2398481 TTCTTAAAATACGAA TTAAGGAAAGTCA TTTC TGGCTTTCCTTAA AAATTGATATATTAT TERM 3445 2398559 - 2398586 + T 95 -11.4 -3.60899 | opp_overlap 2398537 2398559, overlap 2398555 TTTATTAAAGTAAAA TTCAGCTGAAGT AAAA ACTCCAGCTGAA TTGGTTTACATTTTA TERM 3446 2398586 - 2398559 - T 100 -13.6 -4.58773 | opp_overlap 2398555 2398559, overlap 2398537 TTTATTAAAGTAAAA TTCAGCTGAAGT AAAA ACTCCAGCTGAA TTGGTTTACATTTTA gntP 2399987 - 2398599 - | gluconate permease CLD_2370 2400166 - 2400038 - | hypothetical protein pdxA 2401227 - 2400223 - | 4-hydroxythreonine-4-phosphate dehydrogenase CLD_2368 2402577 - 2401240 - | hypothetical protein TERM 3447 2402240 - 2402262 + g 72 -7 -4.11692 | opp_overlap 2402237, overlap 2402237 GCCTCTGGGAAAGCT GGTACTACAG CAG CTATGGTACC TTTTGGAAGTGCATC CLD_2367 2403400 - 2402642 - | DeoR family transcriptional regulator CLD_2366 2403943 - 2404110 + | hypothetical protein TERM 3448 2404271 - 2404246 - T 73 -5.4 -4.84918 | overlap 2404239 TCTACAAATATAAAA GCACCCAGCC GTTATA AGCTGAATGC TCTTTATAATCTTAT CLD_2365 2405244 - 2404351 - | CAAX amino terminal protease family protein TERM 3449 2404594 - 2404604 + g 70 -4 -4.85599 | TCCGCAGGCTCCCCA CAAA TTC TTTG TTTTTATAACATACA TERM 3450 2405063 - 2405044 - G 82 -4.4 -5.56263 | gap 1, overlap 2405038 AGTAGAAAATAAAAA CCCTGTTAT TAG ATAA-AGGG AAAAATTAATTGGTG CLD_2364 2405659 - 2407044 + | ErfK/YbiS/YcfS/YnhG family protein TERM 3451 2407125 - 2407170 + T 85 -8.6 -4.6902 | gap 1, opp_overlap 2407130, overlap 2407128 2407130 AACTTCGGTAACTTT TTAA-AGGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCCTCTTCA TTTTTAACATTATAG TERM 3452 2407128 - 2407166 + T 95 -11.9 -3.82528 | opp_overlap 2407130, overlap 2407125 2407130 TTCGGTAACTTTTTA AAGGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCCTC TTCATTTTTAACATT TERM 3453 2407130 - 2407164 + T 100 -14.5 -3.48505 | opp_overlap 2407130, overlap 2407128 2407125 CGGTAACTTTTTAAA GGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCC TCTTCATTTTTAACA TERM 3454 2407164 - 2407130 - T 100 -16.7 -3.57561 | opp_overlap 2407128 2407125 2407130 CGGTAACTTTTTAAA GGGACTATCCCAAAA ATAAA TTTTGAGATAGTCCC TCTTCATTTTTAACA CLD_2363 2408081 - 2407488 - | TetR family transcriptional regulator TERM 3455 2408501 - 2408514 + G 71 -2.4 -5.40474 | ATAGATCGTTCCATA GGTA TATTAC TACC TTTTTTTCAAAAAAT CLD_2362 2408225 - 2408752 + | hypothetical protein CLD_2361 2408894 - 2409547 + | hypothetical protein TERM 3456 2409904 - 2409894 - g 72 -5.4 -4.78597 | TCAATAACAAATAAA GCTA CTA TAGC TACAGATGATAATAA TERM 3457 2412221 - 2412209 - g 81 -2.7 -5.81032 | TAAGCTCAAAAAAAA TCCTA AAG TAGAA ATAGTAACTCCTGAA CLD_2360 2409813 - 2412275 + | hypothetical protein TERM 3458 2412324 - 2412286 - T 100 -12.1 -4.60041 | opp_overlap 2412286 2412288 2412293 ATTGATTCTTAAAAA TATTTAACCTACTATAA ACAAA TTTTAGTAGGTTAAATA TGTGATCTAAAAATA TERM 3459 2412286 - 2412324 + T 89 -12.1 -2.85668 | opp_overlap 2412286, overlap 2412288 2412293 ATTGATTCTTAAAAA TATTTAACCTACTATAA ACAAA TTTTAGTAGGTTAAATA TGTGATCTAAAAATA TERM 3460 2412288 - 2412322 + T 85 -10.3 -2.97747 | opp_overlap 2412286, overlap 2412286 2412293 TGATTCTTAAAAATA TTTAACCTACTATAA ACAAA TTTTAGTAGGTTAAA TATGTGATCTAAAAA CLD_2359 2413419 - 2412346 - | zinc-binding dehydrogenase family oxidoreductase TERM 3461 2413576 - 2413533 - R 72 -9.1 -2.75183 | overlap 2413530 2413558 AGTTTTATTTAATCA GTGTGCCAATATGACACAA ACTTAA CTGTATCATATTGACACAT AAATCTTAAAATTTT TERM 3462 2413848 - 2413815 - R 86 -9.2 -4.09108 | opp_overlap 2413810 2413815 2413819, overlap 2413819 TTTAATTTAGATAAA GAAATAACTACAAA TTTTAT TTTATAGTTATTTC TTGAATTAGTCTGAA CLD_2358 2415833 - 2413869 - | carbon monoxide dehydrogenase TERM 3463 2415904 - 2415921 + r 73 -4.2 -5.1848 | ACCTCTATAATGCTA TACCAT AAGCCA ATGGTA TTTTTTCACTTCCTT CLD_2357 2416139 - 2416020 - | hypothetical protein hypA 2416628 - 2416969 + | hydrogenase nickel insertion protein HypA TERM 3464 2417140 - 2417130 - g 76 -2.6 -5.56673 | AGCTATAATAAAAAA TATT AAT AATA GAGAAAAATTAGCGG hypB 2416972 - 2417610 + | hydrogenase accessory protein HypB TERM 3465 2417627 - 2417600 - T 85 -10 -3.18467 | opp_overlap 2417600, overlap 2417602 AAATTTGCAATTTAA TAGGTGGTTAAT TAAA ACTAACCACCCA TGTACTTATTCGTTG TERM 3466 2417625 - 2417602 - T 87 -10.4 -3.15056 | opp_overlap 2417600, overlap 2417600 ATTTGCAATTTAATA GGTGGTTAAT TAAA ACTAACCACC CATGTACTTATTCGT CLD_2354 2417989 - 2417633 - | dinitrogenase iron-molybdenum cofactor family protein CLD_2353 2418930 - 2418085 - | iron-sulfur binding protein CLD_2352 2419751 - 2418921 - | iron-sulfur binding protein CLD_2351 2420135 - 2419776 - | dinitrogenase iron-molybdenum cofactor family protein TERM 3467 2420397 - 2420359 - R 81 -5.5 -5.31877 | opp_overlap 2420361 2420366, overlap 2420361 2420366 ATGTATTATAAAAAA TATAAAACCCTATAG TCTGTACAC CTATAGGGTTCTATC TATAAATTTCAATCT TERM 3468 2420395 - 2420361 - R 80 -8.1 -4.29153 | opp_overlap 2420361 2420366, overlap 2420359 2420366 GTATTATAAAAAATA TAAAACCCTATAG TCTGTACAC CTATAGGGTTCTA TCTATAAATTTCAAT TERM 3469 2420390 - 2420366 - R 75 -5.8 -5.08086 | opp_overlap 2420361 2420366, overlap 2420361 2420359 ATAAAAAATATAAAA CCCTATAG TCTGTACAC CTATAGGG TTCTATCTATAAATT CLD_2350 2421101 - 2420724 - | hypothetical protein motB 2422160 - 2421396 - | chemotaxis MotB protein motA 2422963 - 2422178 - | chemotaxis protein MotA TERM 3470 2423362 - 2423337 - R 91 -8.3 -5.0916 | TTCTTAATATAAAAA GCCCCATAGGT TTTC ACCTACAGAGC TTTACTTTATAAACT CLD_2347 2425301 - 2423685 - | amidase domain-containing protein TERM 3471 2425414 - 2425393 - R 70 -7.5 -3.42883 | opp_overlap 2425393 2425413, overlap 2425391 2425389 2425386 2425403 2425413 ACAACAAATAATACA TATTGTATA ATCA TATACAATA TTATTCTAATATTCC TERM 3472 2425393 - 2425414 + r 75 -7.5 -3.89291 | opp_overlap 2425391 2425389 2425386 2425393 2425403 2425413, overlap 2425413 ACAACAAATAATACA TATTGTATA ATCA TATACAATA TTATTCTAATATTCC TERM 3473 2425585 - 2425564 - R 73 -4.4 -5.14563 | TTTTTGATTAAAAAA GCCTCAGA AATTAA TCCAAGGC TTTATTATATCTAAT CLD_2346 2426219 - 2425596 - | hypothetical protein TERM 3474 2426417 - 2426395 - R 75 -5.6 -4.98522 | AATTTCATACAAAAA GAGCCCTA TTCAATT TAGGACTC TCGTCAAAATAAGGA CLD_2345 2426840 - 2426499 - | hypothetical protein CLD_2344 2428801 - 2426846 - | OPT family oligopeptide transporter TERM 3475 2427855 - 2427867 + g 71 -3.4 -5.22006 | CCTATTCCTCCCATT GCTT GTTTA AAGC TTTTTATTATAGTAG pepD 2430367 - 2428919 - | aminoacyl-histidine dipeptidase TERM 3476 2430584 - 2430603 + r 72 -3.7 -5.27477 | TAACGTTTACCTATA GTAATTA TTCAAT TAATTAC TTTTTTCATTAAAGT TERM 3477 2430851 - 2430801 - R 100 -17.6 -4.08064 | opp_overlap 2430806, overlap 2430806 AAGGGTGCTTTAAAA TAAAATAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTATTTTA GGACAAACCCTTCTA TERM 3478 2430806 - 2430846 + r 82 -8.7 -4.07568 | opp_overlap 2430801 2430806 TGCTTTAAAATAAAA TAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTA TTTTAGGACAAACCC TERM 3479 2430846 - 2430806 - R 100 -13.1 -5.07652 | opp_overlap 2430806, overlap 2430801 TGCTTTAAAATAAAA TAGATTTAACTTTAATACT AAA AATATTAAAATTAAATCTA TTTTAGGACAAACCC CLD_2342 2431951 - 2430923 - | putative low specificity L-threonine aldolase TERM 3480 2432464 - 2432416 - H 83 -3.6 -5.90231 | ATAAATATAAAAAAA TTATGTAAAAATAGACTT AGCATAACAAATA AAATCTATTTTTACACAA TCATTTCTATAGATT CLD_2340 2432658 - 2432792 + | hypothetical protein glxK 2433931 - 2432789 - | glycerate kinase TERM 3481 2433007 - 2433018 + g 73 -5.8 -4.58283 | TTGCAACCTTGGCTA CTCC GAAA GGAG TTTTTCCAAAGATTG TERM 3482 2433281 - 2433293 + g 88 -9.1 -4.13767 | overlap 2433273 TTTTTTTGCTATTTC GGGAG TAG CTCCC TTTTGAGGTCCAAAA TERM 3483 2433349 - 2433337 - G 77 -7.7 -4.07568 | opp_overlap 2433320 CCTTTTGTCCTAAAA GTGGA TTG TCCAC ATCACAAGCAACCCT CLD_2339 2434208 - 2435005 + | short chain dehydrogenase/reductase family oxidoreductase CLD_2338 2436551 - 2435373 - | putative sodium extrusion protein NatB TERM 3484 2436240 - 2436250 + g 76 -6.8 -4.39568 | opp_overlap 2436240 TATGTTTTCATCAAA TCCC TTT GGGA TTTTAATCTGTAGAT CLD_2337 2437284 - 2436565 - | putative sodium extrusion ATP-binding protein NatA TERM 3485 2437483 - 2437505 + r 72 -3.6 -5.34857 | TTTTTAATATAATTT TATTTGTATT CTA AGTATAAATA TTTTCTTTTATTTGA TERM 3486 2437576 - 2437629 + r 100 -17.1 -5.05712 | opp_overlap 2437581, overlap 2437581 GAGCAGTTATTACCT AAAAAGTGGGTGTAACAAAATTGCT TTAA AGTAGTTTTGTTACACCCACTTTAC TTTTTACTTATTTAT TERM 3487 2437624 - 2437581 - R 100 -17 -4.68593 | opp_overlap 2437581 2437576 GTTATTACCTAAAAA GTGGGTGTAACAAAATTGCT TTAA AGTAGTTTTGTTACACCCAC TTTACTTTTTACTTA TERM 3488 2437581 - 2437624 + r 100 -21.4 -4.37737 | opp_overlap 2437581, overlap 2437576 GTTATTACCTAAAAA GTGGGTGTAACAAAATTGCT TTAA AGTAGTTTTGTTACACCCAC TTTACTTTTTACTTA CLD_2336 2438213 - 2437758 - | acetyltransferase CLD_2335 2438691 - 2438227 - | MarR family transcriptional regulator TERM 3489 2438709 - 2438730 + H 84 -8.9 -4.31835 | opp_overlap 2438709 TATCACCTTCCGAAA TTTACTTGA ACTT TCAAGTAAA TTTATTCTAGCACTT TERM 3490 2438730 - 2438709 - H 79 -8.9 -3.54741 | opp_overlap 2438709 TATCACCTTCCGAAA TTTACTTGA ACTT TCAAGTAAA TTTATTCTAGCACTT TERM 3491 2439139 - 2439126 - g 85 -2.5 -5.94743 | CAAAAAAAATAAAAA TATTA AGGT TAATA AGGCCATAGAAAATT CLD_2334 2439100 - 2439234 + | hypothetical protein TERM 3492 2439313 - 2439347 + T 72 -5.2 -4.91573 | opp_overlap 2439313 2439315, overlap 2439315 CAACAAAAGTAAAAA TACTGTCTTAAAAT ATATTTA ATTTTGAGACAGCA TTTTTGCTCTATTTT TERM 3493 2439347 - 2439313 - T 74 -5.2 -5.17786 | opp_overlap 2439313 2439315, overlap 2439315 CAACAAAAGTAAAAA TACTGTCTTAAAAT ATATTTA ATTTTGAGACAGCA TTTTTGCTCTATTTT CLD_2333 2439846 - 2439442 - | hypothetical protein TERM 3494 2440013 - 2439992 - R 80 -5.9 -5.19879 | TTTCAAATAGAAAAA GGATAGCCT TATA AAACTATCC CTCCTGAAAATTTTT TERM 3495 2440110 - 2440136 + r 95 -9.5 -4.87807 | opp_overlap 2440104 2440113, overlap 2440135 TGTCTAAAATGCGAA TAAGAGCCGCT TTTAT AGCGACTCTTA TTTTTAATATGTTAA TERM 3496 2440133 - 2440113 - R 79 -9 -3.73106 | opp_overlap 2440110, overlap 2440104 CTAAAATGCGAATAA GAGCCGCT TTTAT AGCGACTC TTATTTTTAATATGT TERM 3497 2440173 - 2440183 + r 70 -2.6 -5.62045 | overlap 2440163 GATTCTAAATAACTT TTAT TTA ATAA TTTTTTGTTCTATCT CLD_2332 2441352 - 2440282 - | uroporphyrinogen decarboxylase family protein TERM 3498 2441801 - 2441760 - R 70 -6.1 -4.24606 | opp_overlap 2441752 AAGTTATACCTAAAA TGTAAATAAGAGCTACT TTTTTATT ATCAGCCCTTATTTACA TCTTAGGCATTTCCT CLD_2331 2443291 - 2441843 - | oxidoreductase, FAD/[2Fe-2S]-binding CLD_2330 2443640 - 2444458 + | MerR family transcriptional regulator TERM 3499 2444476 - 2444497 + T 86 -4.4 -5.94214 | overlap 2444477 CTACATTATAAATGC TGCCTGTT TTAAAT AGCAGGCG TTTTTTTGTTATCTT TERM 3500 2444594 - 2444566 - T 100 -14.8 -5.40004 | TATCAAATTAAAAAA GCTGTTGACAAA ATATA TTTGTCAACAGC CTGAAATTTATTAAA CLD_2329 2446070 - 2444667 - | amino acid permease family protein TERM 3501 2445365 - 2445391 + g 78 -6.6 -4.65916 | opp_overlap 2445372, overlap 2445367 AAGCAATCATACCTT TTGAAAATCCTG TTT CCGGATTTTCCA TTTTATTAACATAGG TERM 3502 2445367 - 2445389 + g 73 -9.2 -2.62958 | opp_overlap 2445372, overlap 2445365 GCAATCATACCTTTT GAAAATCCTG TTT CCGGATTTTC CATTTTATTAACATA TERM 3503 2445477 - 2445465 - G 75 -4.9 -5.07107 | TAAATTGGTAAAAAA TTTTG TAT CAAAA GTTGGCATAAAGGTT TERM 3504 2446382 - 2446419 + r 82 -10.7 -2.93393 | opp_overlap 2446384 2446392, overlap 2446392 AATAAGCTAATACAA AATAGAAAAAGCGCCTG ATTT TAGGCGCTTTTTCTACC ATTTATAAACTCAGA TERM 3505 2446417 - 2446384 - R 100 -17 -4.7033 | opp_overlap 2446382 2446392, overlap 2446392 TAAGCTAATACAAAA TAGAAAAAGCGCCT GATTTT AGGCGCTTTTTCTA CCATTTATAAACTCA TERM 3506 2446392 - 2446409 + r 93 -9.1 -4.89393 | opp_overlap 2446392 2446384, overlap 2446382 TACAAAATAGAAAAA GCGCCTG ATTT TAGGCGC TTTTTCTACCATTTA TERM 3507 2446409 - 2446392 - R 100 -8.4 -5.32599 | opp_overlap 2446382 2446392, overlap 2446384 TACAAAATAGAAAAA GCGCCT GATTTT AGGCGC TTTTTCTACCATTTA CLD_2328 2447048 - 2446506 - | putative phosphatase CLD_2327 2447682 - 2447425 - | hypothetical protein TERM 3508 2448012 - 2447975 - H 73 -5.8 -4.77165 | gap 1, opp_overlap 2447975 2447977, overlap 2447977 TTCTTTAGAATAAAA TAGTTTGCATA-GAAAC TAATT GATTCGTATGCAAACCA TTTTTTATATAATAT TERM 3509 2447975 - 2448012 + H 72 -3.6 -5.40625 | gap 1, opp_overlap 2447975 2447977, overlap 2447977 TTCTTTAGAATAAAA TAGTTTGCATA-GAAAC TAATT GATTCGTATGCAAACCA TTTTTTATATAATAT CLD_2326 2448041 - 2448166 + | hypothetical protein CLD_2325 2448185 - 2448616 + | MarR family transcriptional regulator CLD_2324 2448619 - 2449011 + | hypothetical protein CLD_2323 2449244 - 2449110 - | hypothetical protein thiM 2450230 - 2449433 - | hydroxyethylthiazole kinase TERM 3510 2450009 - 2450028 + g 74 -5.1 -4.90002 | ATAGGCTGTTTTACC TGAAATC AACATA GATTTCA TTTTATTATCTGTTA thiW 2450777 - 2450208 - | thiW protein TERM 3511 2450683 - 2450668 - G 71 -4.6 -4.70613 | opp_overlap 2450668 AAAATGTTAATAAAA TGGGCC ATAG GGCACA TTCCCTCAATACGAA TERM 3512 2451063 - 2451036 - R 95 -8.5 -5.23765 | opp_overlap 2451036 GAAACAACATAAAAA TGGGATACACC AAATAA GGCATATCCCA TTATACTTACAAAAA CLD_2320 2451657 - 2451220 - | acetyltransferase CLD_2319 2452513 - 2451785 - | metallo-beta-lactamase family protein TERM 3513 2452156 - 2452168 + g 77 -7.7 -4.04318 | TTGCGCTCTTTTTCT CTTCC TCA GGAAG TTTATCATATATAGA TERM 3514 2452654 - 2452689 + r 100 -16.5 -5.76237 | opp_overlap 2452654 TACCAATAATAAAAA TCGGTGTTAATTATC AATTAA GATAATTAACACCGA TTTTTTATTTATATA TERM 3515 2452689 - 2452654 - R 100 -16.5 -5.31855 | opp_overlap 2452654 TACCAATAATAAAAA TCGGTGTTAATTATC AATTAA GATAATTAACACCGA TTTTTTATTTATATA CLD_2318 2452970 - 2452698 - | hypothetical protein bioD 2453938 - 2453255 - | dethiobiotin synthase bioB 2454897 - 2453941 - | biotin synthase CLD_2315 2455450 - 2454890 - | BioY family protein TERM 3516 2455546 - 2455510 - R 100 -11.1 -5.42131 | opp_overlap 2455510 TAATCATATAAAAAA GCATTGTCAACTTATTT TTT AAAAAAGTTTACAATGC TTTTTTATTCTTTTT TERM 3517 2455510 - 2455546 + r 100 -11.1 -5.80727 | opp_overlap 2455510 TAATCATATAAAAAA GCATTGTCAACTTATTT TTT AAAAAAGTTTACAATGC TTTTTTATTCTTTTT CLD_2314 2455919 - 2455590 - | hypothetical protein CLD_2313 2456335 - 2455907 - | MarR family transcriptional regulator TERM 3518 2456465 - 2456440 - R 100 -7.7 -5.80951 | opp_overlap 2456440 AGCTAAAATAAAAAA GAGATACTCAA ACTC TTAAGCATCTC TTTAACCTTATTTAA CLD_2312 2457073 - 2456477 - | hypothetical protein TERM 3519 2458555 - 2458570 + G 72 -7.6 -3.6239 | opp_overlap 2458552 2458551, overlap 2458551 TAATAGTAACATGCA TCTTGC TCAT GCAAGA TTCCTTTATGGCTGT CLD_2311 2457251 - 2459044 + | M24 family metallopeptidase TERM 3520 2459521 - 2459504 - g 72 -4.1 -5.12617 | opp_overlap 2459504 2459506 2459518, overlap 2459506 GAATTATCTAAAAAA GATGCTG CCTA CAGCATA TTCTATATGTTTATA TERM 3521 2459519 - 2459506 - g 72 -6.7 -4.1821 | opp_overlap 2459504 2459506 2459518, overlap 2459504 ATTATCTAAAAAAGA TGCTG CCTA CAGCA TATTCTATATGTTTA CLD_2310 2459075 - 2460472 + | amino acid/peptide transporter TERM 3522 2460547 - 2460515 - T 100 -13 -5.55695 | opp_overlap 2460515 CAATAATACAAAAAA GACTATAATGCTAT TAACT ATAGCACTATAGTC TTTCCTAACTTAAAT TERM 3523 2460515 - 2460547 + T 91 -10.8 -3.79668 | opp_overlap 2460515 CAATAATACAAAAAA GACTATAATGCTAT TAACT ATAGCACTATAGTC TTTCCTAACTTAAAT TERM 3524 2460691 - 2460643 - T 100 -11.3 -4.68124 | opp_overlap 2460657 2460660, overlap 2460634 2460632 2460657 CCAATATATAGAAAA TTCCATACAAAAAAGAACCCTAT TTA ATAGGGCTCTTTTTTTTAAGTAA GGAGGTCTATGCTTA TERM 3525 2460657 - 2460677 + T 100 -8.3 -5.81412 | opp_overlap 2460643 2460657, overlap 2460660 ATTCCATACAAAAAA GAACCCTAT TTA ATAGGGCTC TTTTTTTTAAGTAAG TERM 3526 2460677 - 2460657 - T 100 -10.5 -5.37043 | opp_overlap 2460657 2460660, overlap 2460643 ATTCCATACAAAAAA GAACCCTAT TTA ATAGGGCTC TTTTTTTTAAGTAAG TERM 3527 2460660 - 2460674 + T 74 -8.6 -3.31589 | opp_overlap 2460657 2460643, overlap 2460657 CCATACAAAAAAGAA CCCTAT TTA ATAGGG CTCTTTTTTTTAAGT CLD_2309 2461212 - 2460964 - | hypothetical protein TERM 3528 2461457 - 2461483 + r 85 -11.1 -2.85847 | opp_overlap 2461456, overlap 2461442 TAAGTTTTTCAATAT TTTATAGAGAG CTTGT CTCTCTATAAA TATAATATGAAACTT CLD_2308 2461802 - 2461533 - | hypothetical protein CLD_2307 2461998 - 2462336 + | hypothetical protein TERM 3529 2462388 - 2462347 - T 87 -9.8 -3.44586 | gap 1, opp_overlap 2462350 2462351, overlap 2462349 2462351 2462364 ACTAATTTAGTATAA TATAGGACAGCTTAATATA TTTTT TATATTAAGCTGTCC-ATT CTAATATAAAAAATA TERM 3530 2462386 - 2462349 - T 93 -12.4 -3.29161 | gap 1, opp_overlap 2462350 2462351, overlap 2462347 2462351 2462364 TAATTTAGTATAATA TAGGACAGCTTAATATA TTTTT TATATTAAGCTGTCC-A TTCTAATATAAAAAA TERM 3531 2462350 - 2462386 + T 100 -14 -3.46602 | opp_overlap 2462349 2462347 2462351 2462364, overlap 2462351 AATTTAGTATAATAT AGGACAGCTTAATATA TTTTT TATATTAAGCTGTCCA TTCTAATATAAAAAA TERM 3532 2462351 - 2462385 + T 100 -17.5 -2.67747 | opp_overlap 2462351 2462349 2462347 2462364, overlap 2462350 ATTTAGTATAATATA GGACAGCTTAATATA TTTTT TATATTAAGCTGTCC ATTCTAATATAAAAA TERM 3533 2462385 - 2462351 - T 100 -17.5 -3.2059 | opp_overlap 2462350 2462351, overlap 2462349 2462347 2462364 ATTTAGTATAATATA GGACAGCTTAATATA TTTTT TATATTAAGCTGTCC ATTCTAATATAAAAA CLD_2306 2463502 - 2462501 - | choloylglycine hydrolase family protein TERM 3534 2463470 - 2463456 - G 74 -8.6 -3.32521 | AGTATATTCCCATAA TGAAGC CCT GCTTCA TAGTGACTACCTTTC TERM 3535 2463638 - 2463609 - R 72 -3.7 -5.27938 | gap 1, opp_overlap 2463611, overlap 2463611 ATTTGTAAATAAAAA TACCGCA-TATTCA TAT TGAATAATACGGTC TAATGTAATTATATA TERM 3536 2463636 - 2463611 - R 70 -6.3 -4.27026 | gap 1, opp_overlap 2463611, overlap 2463609 TTGTAAATAAAAATA CCGCA-TATTCA TAT TGAATAATACGG TCTAATGTAATTATA CLD_2305 2464281 - 2463700 - | hypothetical protein TERM 3537 2464607 - 2464584 - R 100 -12.6 -3.87062 | opp_overlap 2464575 2464572, overlap 2464575 AATTAACAATCTAAA GGATTGGTAT TTAA ATACCAATCC TAGAAAATAATAAAT CLD_2304 2464971 - 2464732 - | hypothetical protein TERM 3538 2465414 - 2465399 - R 100 -9 -5.24989 | opp_overlap 2465401 TTATATATTAAAAAA GAGCTC TTAT GAGCTC TTAAAAAATTCTTAA CLD_2303 2465629 - 2465426 - | hypothetical protein CLD_2302 2466441 - 2466773 + | hypothetical protein TERM 3539 2466790 - 2466819 + F 93 -9.5 -4.51699 | TGAGTATAATATATG GCAATTTTATATG TTTT CATATGAAGTTGC TTTTATAATAATTAT TERM 3540 2466914 - 2466891 - f 100 -12.5 -5.06414 | opp_overlap 2466886 2466885 2466882 2466895 CCTTTTGAATAAAAA GGCACTTGG TTAATT CCAAGTGCC TTCAAGTACTTTTTA CLD_2301 2467112 - 2468095 + | oxidoreductase family protein TERM 3541 2468108 - 2468129 + T 82 -10.1 -2.94888 | opp_overlap 2468108, overlap 2468105 TAAACTTTAGAAAAA CCCCAGGCA TTTC TACCTGGGG TCCTTTGAATAACTT TERM 3542 2468129 - 2468108 - T 100 -12.3 -4.89393 | opp_overlap 2468108 2468105 TAAACTTTAGAAAAA CCCCAGGCA TTTC TACCTGGGG TCCTTTGAATAACTT CLD_2300 2468357 - 2468190 - | hypothetical protein TERM 3543 2468623 - 2468595 - R 100 -11.2 -5.67529 | AAGCAAAAATAAAAA GCTGTTGACAAA ATATA TTTATCAACAGC CTAAGATAGCTTCTT TERM 3544 2468626 - 2468653 + r 71 -5.6 -4.70046 | opp_overlap 2468630, overlap 2468628 ATTTATCAACAGCCT AAGATAGCTTCT TAAA GGGAGCTATCTA TTTTCTAATTTTCTA TERM 3545 2468628 - 2468651 + r 78 -8.2 -3.9392 | opp_overlap 2468630, overlap 2468626 TTATCAACAGCCTAA GATAGCTTCT TAAA GGGAGCTATC TATTTTCTAATTTTC CLD_2299 2469065 - 2468658 - | hypothetical protein TERM 3546 2469138 - 2469101 - R 89 -10.1 -3.54951 | opp_overlap 2469103 2469106, overlap 2469103 2469106 TATTTGACTATACAA TAGAAGCACATACTA TTATTACT TAGTATGTGCTTCTT AATTACTTTATTTAG TERM 3547 2469103 - 2469136 + r 95 -12.7 -3.54828 | opp_overlap 2469103 2469101 2469106, overlap 2469106 TTTGACTATACAATA GAAGCACATACTA TTATTACT TAGTATGTGCTTC TTAATTACTTTATTT TERM 3548 2469136 - 2469103 - R 95 -12.7 -3.34902 | opp_overlap 2469103 2469106, overlap 2469101 2469106 TTTGACTATACAATA GAAGCACATACTA TTATTACT TAGTATGTGCTTC TTAATTACTTTATTT TERM 3549 2469133 - 2469106 - R 76 -8.6 -3.80945 | opp_overlap 2469103 2469106, overlap 2469103 2469101 GACTATACAATAGAA GCACATACTA TTATTACT TAGTATGTGC TTCTTAATTACTTTA TERM 3550 2469106 - 2469133 + r 78 -8.6 -3.87638 | opp_overlap 2469106 2469103 2469101, overlap 2469103 GACTATACAATAGAA GCACATACTA TTATTACT TAGTATGTGC TTCTTAATTACTTTA CLD_2298 2469739 - 2469146 - | putative lipoprotein msrB 2470362 - 2469913 - | methionine-R-sulfoxide reductase TERM 3551 2470088 - 2470100 + g 74 -6.3 -4.43501 | CTTACTTCTGTTCTA GTCAT TCC ATGAC TTTTATCAATAGATT TERM 3552 2470526 - 2470491 - R 85 -6.2 -5.46129 | opp_overlap 2470499, overlap 2470498 2470499 TAACAAATTAAAAAA TTATAAAGCCCCATGT ATTT ACATGGGGTTTTTGAA CAGTCTGAATAAAGA TERM 3553 2470519 - 2470498 - R 84 -8.7 -4.3179 | opp_overlap 2470499, overlap 2470491 2470499 TTAAAAAATTATAAA GCCCCATGT ATTT ACATGGGGT TTTTGAACAGTCTGA TERM 3554 2470499 - 2470518 + r 100 -12.2 -4.59109 | opp_overlap 2470498 2470491 2470499 TAAAAAATTATAAAG CCCCATGT ATTT ACATGGGG TTTTTGAACAGTCTG TERM 3555 2470518 - 2470499 - R 93 -12.2 -3.17447 | opp_overlap 2470499, overlap 2470498 2470491 TAAAAAATTATAAAG CCCCATGT ATTT ACATGGGG TTTTTGAACAGTCTG TERM 3556 2470568 - 2470552 - R 73 -6.7 -4.29977 | opp_overlap 2470550 2470552 AAAGAACTTAATAAA CAATAAA TTT TTTATTG TGTTTTTAATTAAAT TERM 3557 2470552 - 2470568 + r 71 -6.7 -4.06004 | opp_overlap 2470552, overlap 2470550 AAAGAACTTAATAAA CAATAAA TTT TTTATTG TGTTTTTAATTAAAT sodF 2471190 - 2470594 - | Mn/Fe superoxide dismutase CLD_2295 2471901 - 2471302 - | ABC transporter, ATP-binding protein CLD_2294 2473229 - 2471898 - | ABC transporter, ATP-binding transmembrane protein TERM 3558 2473335 - 2473300 - R 78 -9.2 -2.93975 | opp_overlap 2473303, overlap 2473299 2473297 AGCCTCTAAAAATAC TTATAGGGATTAGTTA AAAT TAACTAATCCCTATTT TAATCTGCTAAAAGT TERM 3559 2473303 - 2473332 + r 100 -15.3 -4.371 | opp_overlap 2473300 2473299 2473297 CTCTAAAAATACTTA TAGGGATTAGTTA AAAT TAACTAATCCCTA TTTTAATCTGCTAAA CLD_2293 2474178 - 2473507 - | AraC family transcriptional regulator CLD_2292 2474826 - 2474713 - | hypothetical protein TERM 3560 2474794 - 2474745 - G 76 -8.7 -3.48276 | gap 1, overlap 2474748 2474750 2474759 TTTCTGTGTACATAA CAATACCCCCAAAAGTAGCTT-GA TTA TCTATGCTACAATTAGGGGCATTG TTACAATATGAAATT CLD_2291 2475760 - 2475026 - | hypothetical protein CLD_2290 2476542 - 2475796 - | hypothetical protein CLD_2289 2477455 - 2476535 - | antibiotic ABC transporter, ATP-binding protein TERM 3561 2477531 - 2477479 - R 71 -6.6 -4.15044 | gap 1, opp_overlap 2477486, overlap 2477481 2477482 CTCCCTTTTAATAAA TAGTTAAGGATTACCCCTCATCCAT ATCT ATAG-TAAGGGATAATCCTTAAATT CAAGCTACGTAATTA TERM 3562 2477529 - 2477481 - R 84 -9.2 -3.6761 | gap 1, opp_overlap 2477486, overlap 2477479 2477482 CCCTTTTAATAAATA GTTAAGGATTACCCCTCATCCAT ATCT ATAG-TAAGGGATAATCCTTAAA TTCAAGCTACGTAAT TERM 3563 2477528 - 2477482 - R 91 -12.7 -2.80244 | gap 1, opp_overlap 2477486, overlap 2477481 2477479 CCTTTTAATAAATAG TTAAGGATTACCCCTCATCCAT ATCT ATAG-TAAGGGATAATCCTTAA ATTCAAGCTACGTAA CLD_2288 2478568 - 2477657 - | sensor histidine kinase CLD_2287 2479272 - 2478568 - | DNA-binding response regulator TERM 3564 2479382 - 2479334 - H 75 -8.8 -3.21276 | gap 1, opp_overlap 2479343, overlap 2479335 2479343 2479371 TTCCCTTTCATAATA TTTTTATAATTATTTATATA-AG CTAC CTATATATAAATAATTATAAAAG CCTATTACAATTATA TERM 3565 2479381 - 2479335 - H 86 -12.3 -2.52623 | gap 1, opp_overlap 2479343, overlap 2479334 2479343 2479371 TCCCTTTCATAATAT TTTTATAATTATTTATATA-AG CTAC CTATATATAAATAATTATAAAA GCCTATTACAATTAT CLD_2286 2479627 - 2480388 + | exonuclease family protein TERM 3566 2480383 - 2480405 + T 86 -7.8 -4.82333 | opp_overlap 2480383 GATAAGATAAAGAAA GAGTAGATAA ATT TTTTCTACTC TTTTTAAATTATTAT TERM 3567 2480405 - 2480383 - T 83 -7.8 -4.70921 | opp_overlap 2480383 GATAAGATAAAGAAA GAGTAGATAA ATT TTTTCTACTC TTTTTAAATTATTAT CLD_2285 2480724 - 2480422 - | stress responsive alpha-beta barrel domain-containing protein CLD_2284 2481539 - 2480922 - | hypothetical protein TERM 3568 2480997 - 2480983 - G 73 -5.8 -4.68103 | CCAATTGGAATAAAA TATATG CAC CATATA AGCAACACAATTATG CLD_2283 2482399 - 2481563 - | metallo-beta-lactamase family protein TERM 3569 2482658 - 2482635 - R 70 -7.6 -3.37493 | overlap 2482638 TTTTTAATATACTAA TAAGAAAAGA GATT TCTTTTCCTA GCGCAAGTTTTTGCA TERM 3570 2482655 - 2482638 - R 70 -7.1 -3.82205 | overlap 2482635 TTAATATACTAATAA GAAAAGA GATT TCTTTTC CTAGCGCAAGTTTTT CLD_2280 2483391 - 2483155 - | putative DNA-binding protein TERM 3571 2483627 - 2483587 - R 82 -5.3 -5.52096 | opp_overlap 2483592 2483593, overlap 2483588 2483590 2483591 AAATGTAATAAAAAA CTATCAGGCCAGATGCTTA ATC TAGGCATCTGGCCGTTTTG CTTTTAATAATATAG TERM 3572 2483623 - 2483590 - R 79 -8.9 -3.5087 | gap 1, opp_overlap 2483592 2483593, overlap 2483588 2483587 2483591 TGTAATAAAAAACTA TCAGGCCAGATGCTTA ATC TAGGCATCTGGCC-GT TTTGCTTTTAATAAT TERM 3573 2483622 - 2483591 - R 88 -12.4 -2.69438 | gap 1, opp_overlap 2483592 2483593, overlap 2483590 2483588 2483587 GTAATAAAAAACTAT CAGGCCAGATGCTTA ATC TAGGCATCTGGCC-G TTTTGCTTTTAATAA TERM 3574 2483592 - 2483622 + r 100 -14.8 -4.70319 | opp_overlap 2483591 2483590 2483588 2483587, overlap 2483593 TAATAAAAAACTATC AGGCCAGATGCTTA ATC TAGGCATCTGGCCG TTTTGCTTTTAATAA TERM 3575 2483593 - 2483621 + r 100 -18.3 -3.41107 | opp_overlap 2483591 2483590 2483588 2483587, overlap 2483592 AATAAAAAACTATCA GGCCAGATGCTTA ATC TAGGCATCTGGCC GTTTTGCTTTTAATA CLD_2279 2484452 - 2483631 - | putative protein-glutamine gamma-glutamyltransferase TERM 3576 2484147 - 2484159 + g 74 -7.7 -3.83768 | AAAGATATCCTTTAT GGCAT CAG ATGCC TTTACATGTTCTTTT CLD_2278 2485444 - 2484449 - | hypothetical protein TERM 3577 2485574 - 2485557 - R 81 -7.1 -4.79683 | opp_overlap 2485557 AACTTACAAAACAAA GGTATTT ATTT AAATACC TTTCAAATTAAAGCA TERM 3578 2485557 - 2485574 + r 70 -7.1 -3.66178 | opp_overlap 2485557 AACTTACAAAACAAA GGTATTT ATTT AAATACC TTTCAAATTAAAGCA CLD_2277 2485918 - 2485793 - | hypothetical protein TERM 3579 2486111 - 2486073 - R 100 -20 -4.66163 | opp_overlap 2486075, overlap 2486060 ATTGTGACGTAAAAA CACCACACTATTCAAATT TAA AATTTAAATAGTGTGGTG TTCAAGTAGATTATT TERM 3580 2486075 - 2486109 + r 100 -14.6 -3.06969 | opp_overlap 2486060 2486073 TGTGACGTAAAAACA CCACACTATTCAAATT TAA AATTTAAATAGTGTGG TGTTCAAGTAGATTA CLD_2276 2486361 - 2486248 - | hypothetical protein TERM 3581 2487561 - 2487526 - R 100 -14.2 -4.10144 | opp_overlap 2487523 2487532 2487537, overlap 2487527 2487529 TTAATATAATAATAA GCAGTAATCAAGAGTG CGTC CACTCTTGACTACTGT AAATGTATAAAGCAT TERM 3582 2487560 - 2487527 - R 100 -17.7 -3.05002 | opp_overlap 2487523 2487532 2487537, overlap 2487526 2487529 TAATATAATAATAAG CAGTAATCAAGAGTG CGTC CACTCTTGACTACTG TAAATGTATAAAGCA TERM 3583 2487558 - 2487529 - R 100 -14.5 -3.06098 | opp_overlap 2487523 2487532 2487537, overlap 2487527 2487526 ATATAATAATAAGCA GTAATCAAGAGTG CGTC CACTCTTGACTAC TGTAAATGTATAAAG CLD_2274 2488037 - 2487615 - | flavodoxin gapN 2489387 - 2488059 - | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase TERM 3584 2488244 - 2488254 + g 70 -5.4 -4.52589 | opp_overlap 2488244 CTGATAAATAAAAAG CATC ATT GATG TTTTCTGTAAACACC CLD_2272 2490326 - 2489553 - | putative flavohemoprotein TERM 3585 2490511 - 2490477 - R 95 -8.2 -5.12474 | gap 1, opp_overlap 2490481, overlap 2490481 TAGAATATATAAAAA TA-AATCCTAACTAC AACTAA GTAGTTAGGATTCTA TTGGCTAGTTTATTT TERM 3586 2490481 - 2490506 + r 91 -10.6 -3.70104 | opp_overlap 2490481 2490477 ATATATAAAAATAAA TCCTAACTAC AACTAA GTAGTTAGGA TTCTATTGGCTAGTT TERM 3587 2490506 - 2490481 - R 100 -10.6 -5.02777 | opp_overlap 2490481, overlap 2490477 ATATATAAAAATAAA TCCTAACTAC AACTAA GTAGTTAGGA TTCTATTGGCTAGTT CLD_2271 2491865 - 2490552 - | amidohydrolase family protein TERM 3588 2491993 - 2491935 - R 100 -8.8 -5.71712 | gap 1, opp_overlap 2491940 2491953 2491963, overlap 2491937 2491984 CTCTACATAAAAAAA CATAATAGCTAATCATAAGTTAACTCT TTTAAT AGAATTAACTTATAATCAACTATTAT- GGTAGTTGGTAGAAA TERM 3589 2491992 - 2491937 - R 100 -13.9 -4.50122 | opp_overlap 2491940 2491953 2491963, overlap 2491935 2491984 CTACATAAAAAAACA TAATAGCTAATCATAAGTTAACTCT TTTAAT AGAATTAACTTATAATCAACTATTA TGGTAGTTGGTAGAA TERM 3590 2492067 - 2492089 + r 83 -8 -4.63184 | opp_overlap 2492070 TATAAAAATTTAACT TAATTATATA CAC TATATAATTA TTTTTCAACTGAATT CLD_2270 2492767 - 2492255 - | hypothetical protein CLD_2268 2494610 - 2493765 - | MutS domain-containing protein CLD_2267 2494888 - 2496261 + | hypothetical protein CLD_2266 2496768 - 2496463 - | hypothetical protein CLD_2265 2497285 - 2496761 - | hypothetical protein CLD_2264 2497718 - 2497266 - | hypothetical protein CLD_2263 2498230 - 2497715 - | ECF subfamily RNA polymerase sigma factor TERM 3591 2497854 - 2497842 - G 78 -6.3 -4.84761 | overlap 2497845 ATATCTTTACAAAAA TAGCT TAT AGCTA CAGTTCTATAAGGCT TERM 3592 2498451 - 2498423 - R 80 -3.2 -5.89947 | overlap 2498412 TAAAGCTAAAAAAAA CCTTAGCCAC GTAATATCA ATGACTAAGG TTATTTTTCGTAATA CLD_2262 2499787 - 2498681 - | spore germination protein CLD_2261 2500011 - 2499883 - | hypothetical protein CLD_2260 2500665 - 2500261 - | hypothetical protein CLD_2259 2501391 - 2501104 - | hypothetical protein CLD_2258 2503548 - 2502196 - | polyA polymerase family protein CLD_2257 2504039 - 2503905 - | hypothetical protein CLD_2256 2504856 - 2504236 - | hypothetical protein CLD_2255 2505193 - 2504849 - | PadR-family transcriptional regulator TERM 3593 2505298 - 2505318 + H 78 -4.2 -5.60993 | opp_overlap 2505311, overlap 2505297 ATTTGGTTATATCGT TTTATAAA AATTA TTTATAAA TTTTTTTATAAAAGC CLD_2254 2505439 - 2505585 + | hypothetical protein CLD_2253 2505683 - 2505853 + | hypothetical protein CLD_2252 2505853 - 2506230 + | death on curing protein TERM 3594 2506223 - 2506271 + T 100 -12.8 -4.00587 | gap 1, opp_overlap 2506226 2506231 2506237, overlap 2506226 2506227 GGATATTAAGCCATA GC-ATTTAAGCATAAGACAGGAG ATGA TTACTGTCTTATGCTTAAGTTGC TTGTTTCACTATATT TERM 3595 2506267 - 2506226 - T 81 -10.4 -2.67209 | opp_overlap 2506223 2506226 2506227, overlap 2506231 2506237 TATTAAGCCATAGCA TTTAAGCATAAGACAGGA GATGAT TACTGTCTTATGCTTAAG TTGCTTGTTTCACTA TERM 3596 2506226 - 2506267 + T 100 -13.3 -3.62723 | opp_overlap 2506226 2506231 2506237, overlap 2506223 2506227 TATTAAGCCATAGCA TTTAAGCATAAGACAGGAG ATGA TTACTGTCTTATGCTTAAG TTGCTTGTTTCACTA TERM 3597 2506227 - 2506266 + T 100 -14.6 -2.76911 | opp_overlap 2506226 2506231 2506237, overlap 2506226 2506223 ATTAAGCCATAGCAT TTAAGCATAAGACAGGAG ATGA TTACTGTCTTATGCTTAA GTTGCTTGTTTCACT TERM 3598 2506262 - 2506231 - T 85 -10.3 -3.11812 | opp_overlap 2506227 2506226 2506223, overlap 2506226 2506237 AGCCATAGCATTTAA GCATAAGACAGGA GATGAT TACTGTCTTATGC TTAAGTTGCTTGTTT CLD_2251 2507540 - 2506290 - | sensor histidine kinase CLD_2250 2508213 - 2507533 - | DNA-binding response regulator CLD_2249 2508745 - 2508206 - | UBA/TS-N domain-containing protein TERM 3599 2508354 - 2508338 - G 73 -3.8 -5.21709 | TTCTATATCAAAAAA TAATGA GGTAA TCATTA AAGGTATAATCATCC TERM 3600 2508885 - 2508841 - R 82 -10.2 -3.08133 | gap 1, opp_overlap 2508851 TATCCAGGGACGTAA CCACTCT-TTACTCCCATTTT GAAG AAGATGGGAGTATTAGAGCGG GTAGTCATCGGATAA TERM 3601 2508851 - 2508874 + r 85 -10.4 -3.02144 | opp_overlap 2508841 CGTAACCACTCTTTA CTCCCATTTT GAAG AAGATGGGAG TATTAGAGCGGGTAG TERM 3602 2508978 - 2509011 + r 100 -15.7 -3.52307 | opp_overlap 2508969 2508978 2508982, overlap 2508982 ATATAACTTTAAAAA TAAAGAGATTTTGAA TATT TTCAAAATCTCTTTA TTATACTATATATTA TERM 3603 2509011 - 2508978 - R 100 -15.7 -4.69622 | opp_overlap 2508978 2508982, overlap 2508969 2508982 ATATAACTTTAAAAA TAAAGAGATTTTGAA TATT TTCAAAATCTCTTTA TTATACTATATATTA TERM 3604 2509007 - 2508982 - R 100 -12.1 -4.88293 | opp_overlap 2508982 2508978, overlap 2508978 AACTTTAAAAATAAA GAGATTTTGAA TATT TTCAAAATCTC TTTATTATACTATAT TERM 3605 2508982 - 2509007 + r 100 -12.1 -4.38273 | opp_overlap 2508978 2508982, overlap 2508978 AACTTTAAAAATAAA GAGATTTTGAA TATT TTCAAAATCTC TTTATTATACTATAT CLD_2248 2509566 - 2509024 - | hypothetical protein TERM 3606 2509785 - 2509760 - R 78 -5.5 -5.10064 | opp_overlap 2509760 CTCAATACATAAAAA GAAATGTCCTA AAAT TAAGACCTTTC TCTTTTGGTGTTCCG CLD_2247 2510734 - 2509925 - | hypothetical protein TERM 3607 2510368 - 2510384 + g 72 -4.5 -4.98436 | overlap 2510369 TATTCCGCCTTGTAT TTTTGAT TTT ATCAAAG TTTTTATAGTATTGA gidA-1 2511035 - 2512312 + | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA TERM 3608 2512316 - 2512351 + T 100 -16.5 -4.9218 | opp_overlap 2512316 AGATTAATATAAAAA TTTTAAAAGGAGCCA AGATTA TGGCTCCTTTTAAAA TTTTTATACTAAATA TERM 3609 2512351 - 2512316 - T 100 -16.5 -5.13344 | opp_overlap 2512316 AGATTAATATAAAAA TTTTAAAAGGAGCCA AGATTA TGGCTCCTTTTAAAA TTTTTATACTAAATA purB 2513797 - 2512367 - | adenylosuccinate lyase TERM 3610 2513073 - 2513083 + g 72 -5.4 -4.70772 | opp_overlap 2513073 2513071 AATGTATTTAATATA GTTG AAT CAAC TTTTCTTGGATATGT TERM 3611 2513404 - 2513418 + g 72 -4.4 -5.08731 | ACTTTTTCAAATTAT TTATAA CAT TTATAA TTTTCTTCTTTATTA CLD_2244 2514035 - 2514256 + | hypothetical protein TERM 3612 2514275 - 2514259 - T 83 -6.5 -5.15682 | opp_overlap 2514259 AAAACATAAATAAAA GGCTCCC CAA AAGAGCC CTTAATTTTTATTCT ptsH 2514541 - 2514284 - | phosphocarrier protein HPr aspB 2515845 - 2514652 - | aspartate aminotransferase CLD_2241 2516346 - 2515990 - | hypothetical protein TERM 3613 2516197 - 2516210 + g 74 -6.7 -4.23988 | ATAGGATATTATACC TGCCA TTAC TGGCA TATTTTTTAATATAG CLD_2240 2517626 - 2516343 - | hypothetical protein TERM 3614 2516766 - 2516779 + g 86 -5.3 -5.61277 | TATCCATTCTTTAGC TGCTT TATT AAGCA TTTTATTTTTTTGTG TERM 3615 2517097 - 2517087 - G 74 -3.2 -5.35721 | ATATAATAAGAAAAA TGGC TTT ACCA TGGTGGTTGCTCCTA TERM 3616 2517131 - 2517166 + g 73 -8.7 -3.21416 | opp_overlap 2517131 2517128 2517133 ATACTCCTAAAACTA CATATTTATATTTTA TATCAC TAAAGTATAAATATG TTAATAATAAAAGTA TERM 3617 2517551 - 2517567 + g 72 -5.3 -4.75288 | opp_overlap 2517551 GCATAGATAAACCTA TTATTAT TTT ATAATAA TTTGTTTTACTATAA CLD_2239 2518511 - 2517645 - | UbiA family prenyltransferase TERM 3618 2518054 - 2518026 - G 72 -4.6 -4.9792 | opp_overlap 2518049, overlap 2518029 TATGGTACATAAAAA CAACCAAGGT GATACAGAA ACCTTGGTAG CTAAACTGCCGCTTT TERM 3619 2518262 - 2518290 + g 74 -3.2 -5.45802 | gap 1, opp_overlap 2518268, overlap 2518264 2518267 2518268 TTATAGCTGTAGATT TAGATACTCTTCC ACTT GGGAGAG-GTCTG TTTTTCTTTTCAGGA TERM 3620 2518374 - 2518395 + g 71 -3.2 -5.2422 | opp_overlap 2518369 2518374 CGAAGTTAAACAAAA TAATATAA ATGTTA TTATATTA TTTTTTAATATGCTT TERM 3621 2518543 - 2518569 + r 71 -6.8 -4.0162 | opp_overlap 2518557, overlap 2518520 2518546 2518557 TACTATATATATTTT TAGGTTTTATTT AAT AAATAAAACATA TTTATAGTATAAAAA TERM 3622 2518656 - 2518623 - R 72 -6.1 -4.42062 | opp_overlap 2518628, overlap 2518598 2518628 CACTTTTGAAATAAA TTAAAGGACTTGAAT ATAA ATTCAAGCCCTTTTG TTTTATGTTTTTAAT TERM 3623 2518651 - 2518628 - R 95 -10.4 -4.27211 | opp_overlap 2518628, overlap 2518623 TTGAAATAAATTAAA GGACTTGAAT ATAA ATTCAAGCCC TTTTGTTTTATGTTT TERM 3624 2518628 - 2518651 + r 100 -8.2 -5.2894 | opp_overlap 2518628 2518623 TTGAAATAAATTAAA GGACTTGAAT ATAA ATTCAAGCCC TTTTGTTTTATGTTT spoVS 2518934 - 2518674 - | stage V sporulation protein S TERM 3625 2519007 - 2519055 + r 88 -8.6 -4.81357 | opp_overlap 2519000 2519007, overlap 2519000 ACAAAAAATTAAAAA TTCCTTTTAAATTTTGTAAATT TTAGC AACTTATAAAACTTAAAAGGAA TTTATTTTATAATCT TERM 3626 2519055 - 2519007 - R 100 -10.8 -5.27769 | opp_overlap 2519000 2519007, overlap 2519000 ACAAAAAATTAAAAA TTCCTTTTAAATTTTGTAAATT TTAGC AACTTATAAAACTTAAAAGGAA TTTATTTTATAATCT CLD_2237 2520614 - 2519073 - | HDIG/HD/KH domain-containing protein TERM 3627 2520846 - 2520830 - R 88 -6.6 -5.60993 | opp_overlap 2520825 2520830 2520833, overlap 2520833 TTTTTCATAAAAAAA GTAGGA TAAAC TCCTAC TTTTATCCTTCCTTA TERM 3628 2520830 - 2520846 + r 77 -6.6 -4.58213 | opp_overlap 2520830 2520833, overlap 2520825 2520833 TTTTTCATAAAAAAA GTAGGA TAAAC TCCTAC TTTTATCCTTCCTTA recA 2521916 - 2520849 - | recA protein TERM 3629 2522030 - 2521988 - R 85 -10.2 -3.15056 | opp_overlap 2521991 2522029, overlap 2521991 2521993 2521997 2522029 AGGGTCAACTTAATA TAATATAAATAAAAGCCCCC TAC AGGAACTTTTATTTAAATTA TTGACAATATATTTT TERM 3630 2522027 - 2521991 - R 73 -7.5 -3.71686 | opp_overlap 2521991, overlap 2521988 2521993 2521997 GTCAACTTAATATAA TATAAATAAAAGCCCCC TAC AGGAACTTTTATTTAAA TTATTGACAATATAT TERM 3631 2522025 - 2521993 - R 87 -10.1 -3.43553 | opp_overlap 2521991, overlap 2521991 2521988 2521997 CAACTTAATATAATA TAAATAAAAGCCCCC TAC AGGAACTTTTATTTA AATTATTGACAATAT TERM 3632 2522021 - 2521997 - R 73 -6.5 -4.34444 | opp_overlap 2521991, overlap 2521993 2521991 2521988 TTAATATAATATAAA TAAAAGCCCCC TAC AGGAACTTTTA TTTAAATTATTGACA pgsA 2522639 - 2522055 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 3633 2522552 - 2522562 + g 75 -4 -5.20216 | overlap 2522549 TAGCTATTACTGTAC CATA GGG TATG TTTTTTACTGATATA CLD_2234 2523960 - 2522623 - | RNA modification protein TERM 3634 2523815 - 2523843 + g 74 -7.5 -4.01315 | opp_overlap 2523814 2523815 2523818, overlap 2523816 2523818 GCGGTTTCAATAAAT CCACAGGTATTTA CTA TAATTACCTGTGC TTCTTTAGGATTTTT TERM 3635 2523816 - 2523842 + g 83 -11 -2.99162 | opp_overlap 2523815 2523814 2523818, overlap 2523815 2523818 CGGTTTCAATAAATC CACAGGTATTTA CTA TAATTACCTGTG CTTCTTTAGGATTTT TERM 3636 2524065 - 2524086 + r 80 -8.1 -4.2711 | gap 1, opp_overlap 2524062, overlap 2524060 2524068 AGTATTTACATATTT CCT-CGGAAA TAT TTTCCGTAGG TTTCATTGTTTTTAT ftsK 2526331 - 2524055 - | DNA translocase FtsK/SpoIIIE TERM 3637 2524462 - 2524474 + g 72 -4.9 -4.93296 | AAAATAACATATCTC CTTTT CCT AAAAG TTTTTCTGCTCCTGA TERM 3638 2525437 - 2525456 + g 72 -4.4 -5.08255 | CTTTTTTATCTTGTT TATTTAGT TTTG ACTGAATA TTTTGTTTTAAAAGT TERM 3639 2526471 - 2526448 - R 74 -6.2 -4.64861 | CTTTGTTAAAATAAA TATTTAGCTA TATA TAACTAAATA AACACAGCTTGTACA TERM 3640 2526820 - 2526830 + r 86 -5.4 -5.65496 | AATTAAGGCTATTTT GAGA CAT TCTC TTTTTGTTTTTCATC clpP 2527505 - 2526813 - | Clp protease TERM 3641 2527561 - 2527512 - R 79 -8.1 -4.06687 | gap 1, opp_overlap 2527515, overlap 2527513 2527515 ATCTGCCATAAATAA TTACCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGGTAC TATACATAAAAAATA TERM 3642 2527560 - 2527513 - R 90 -11.6 -3.0353 | gap 1, opp_overlap 2527515, overlap 2527512 2527515 TCTGCCATAAATAAT TACCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGGTA CTATACATAAAAAAT TERM 3643 2527558 - 2527515 - R 82 -9.8 -3.07135 | gap 1, opp_overlap 2527515, overlap 2527513 2527512 TGCCATAAATAATTA CCTCCTACCATATGCATATAA ATA TCTTGTGCATATGGTAG-AGG TACTATACATAAAAA TERM 3644 2527515 - 2527558 + r 79 -9.9 -2.64616 | gap 1, opp_overlap 2527513 2527512 2527515 TGCCATAAATAATTA CCTCCTACCATATGCATA TAAATATCT TGTGCATATGGTAG-AGG TACTATACATAAAAA TERM 3645 2527650 - 2527625 - R 80 -8.5 -4.19735 | TGCTTTAAAATTAAA TTATATCTGAT GCCT ACCAGATATAA TACTCCCACTTACAA dapG 2528958 - 2527753 - | aspartokinase I CLD_2230 2529246 - 2528974 - | PRC-barrel domain-containing protein CLD_2229 2530624 - 2529323 - | M16 family peptidase TERM 3646 2530791 - 2530768 - R 83 -6.8 -5.26316 | opp_overlap 2530768 2530774, overlap 2530774 TCACTTGATAAAAAA TAAAAAGGCA GATA TGCCCTTCTA TTTTTTATTATTTAT TERM 3647 2530768 - 2530791 + r 73 -2.4 -5.74288 | opp_overlap 2530768 2530774, overlap 2530774 TCACTTGATAAAAAA TAAAAAGGCA GATA TGCCCTTCTA TTTTTTATTATTTAT TERM 3648 2530785 - 2530774 - R 86 -5.8 -5.8096 | opp_overlap 2530774 2530768, overlap 2530768 GATAAAAAATAAAAA GGCA GATA TGCC CTTCTATTTTTTATT pnpA 2532907 - 2530799 - | polyribonucleotide nucleotidyltransferase TERM 3649 2533164 - 2533135 - R 70 -5.9 -4.32049 | gap 1, opp_overlap 2533134 2533140, overlap 2533140 TATAATTTATTAAAA TAAT-AGAGCGG GCTTTAG CCGCTCTTATTA CTTTTATTACTTTCT TERM 3650 2533158 - 2533140 - R 70 -7.4 -3.72481 | opp_overlap 2533140 2533134, overlap 2533135 TTTATTAAAATAATA GAGCGG GCTTTAG CCGCTC TTATTACTTTTATTA TERM 3651 2533140 - 2533158 + r 73 -7.4 -4.0219 | opp_overlap 2533135 2533140, overlap 2533134 TTTATTAAAATAATA GAGCGG GCTTTAG CCGCTC TTATTACTTTTATTA rpsO 2533485 - 2533171 - | ribosomal protein S15 TERM 3652 2533572 - 2533541 - R 75 -7.6 -3.85969 | opp_overlap 2533538 2533540 2533541 2533542 2533548, overlap 2533538 2533542 CAAATAAATATATAA TTGTAAATTAATTT TTAT AAATTAATTTACAT ACTTTGTCTTTTAGC TERM 3653 2533542 - 2533571 + r 90 -11.1 -3.18509 | opp_overlap 2533538 2533542 2533541, overlap 2533538 2533541 2533540 2533548 AAATAAATATATAAT TGTAAATTAATTT TTAT AAATTAATTTACA TACTTTGTCTTTTAG TERM 3654 2533571 - 2533542 - R 85 -11.1 -2.89955 | opp_overlap 2533538 2533541 2533540 2533542 2533548, overlap 2533538 2533541 AAATAAATATATAAT TGTAAATTAATTT TTAT AAATTAATTTACA TACTTTGTCTTTTAG ribF 2534487 - 2533567 - | riboflavin biosynthesis protein RibF truB 2535369 - 2534500 - | tRNA pseudouridine synthase B TERM 3655 2534922 - 2534942 + g 93 -8.5 -5.2204 | opp_overlap 2534922 GATCTATACTTAAAA TACATATAT CAT ATATATGTA TTTTTCTTGCTTCTC TERM 3656 2534942 - 2534922 - G 81 -8.5 -4.24204 | opp_overlap 2534922 GATCTATACTTAAAA TACATATAT CAT ATATATGTA TTTTTCTTGCTTCTC TERM 3657 2535386 - 2535402 + r 79 -2.3 -6.00086 | TATATCAACTCTTTT TTTATAG TTT CTATTAA TTTTTTTTCTACTAT CLD_2224 2536332 - 2535370 - | DHH family protein TERM 3658 2535727 - 2535752 + g 81 -6.3 -5.09685 | TCCATAAAGCTTTAA TCTTTGAAATT TTTT ATTTTCAAAGA TTTTTCTATGTATTG TERM 3659 2536301 - 2536271 - G 100 -14.2 -2.87243 | opp_overlap 2536272, overlap 2536277 CCATCAGGAGAAGTA TGGAAAGTAATAGC TAT GCTATTACTTTCCT TTATTTTATCTAGTA TERM 3660 2536272 - 2536300 + g 100 -17.7 -4.84146 | opp_overlap 2536271 2536277 CATCAGGAGAAGTAT GGAAAGTAATAGC TAT GCTATTACTTTCC TTTATTTTATCTAGT TERM 3661 2536295 - 2536277 - G 89 -10.4 -3.72984 | opp_overlap 2536272, overlap 2536271 GGAGAAGTATGGAAA GTAATAGC TAT GCTATTAC TTTCCTTTATTTTAT rbfA 2536684 - 2536322 - | ribosome-binding factor A infB 2538781 - 2536715 - | translation initiation factor IF-2 CLD_2221 2539116 - 2538799 - | ribosomal protein L7Ae family protein CLD_2220 2539375 - 2539103 - | hypothetical protein nusA 2540808 - 2539435 - | N utilization substance protein A CLD_2218 2541286 - 2540825 - | hypothetical protein TERM 3662 2541373 - 2541388 + r 76 -4.6 -5.42259 | opp_overlap 2541373, overlap 2541372 ATATTAATTTAAAAA CGCAAC TTGC GCTGCG TTTTTTTACAAATAG TERM 3663 2541388 - 2541373 - R 78 -6.8 -4.76892 | opp_overlap 2541372 2541373 ATATTAATTTAAAAA CGCAAC TTGC GCTGCG TTTTTTTACAAATAG TERM 3664 2541426 - 2541407 - R 100 -10 -4.40003 | opp_overlap 2541403 2541407 2541409 TTTTACAAATAGAAA GAGCGGGT TTAT ACCCACTC TGTGCTTTAACATAT polC 2545889 - 2541591 - | DNA polymerase III, alpha subunit TERM 3665 2543254 - 2543236 - G 76 -9.6 -2.7497 | overlap 2543235 2543239 2543246 ATAGTAGCTGCAAAG GAAGATCC AAC GGATCCTC TGGATCCTACTAAAT TERM 3666 2543251 - 2543239 - G 71 -7.7 -3.52204 | overlap 2543236 2543235 2543246 GTAGCTGCAAAGGAA GATCC AAC GGATC CTCTGGATCCTACTA gcpE 2547216 - 2546167 - | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase CLD_2215 2548367 - 2547357 - | putative membrane-associated zinc metalloprotease TERM 3667 2548353 - 2548341 - G 72 -7.7 -3.67918 | overlap 2548334 AACTAATATGCCAAA GGCTA AAA TAGCC GCTACTATATACATT dxr 2549569 - 2548412 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLD_2213 2550579 - 2549599 - | hypothetical protein TERM 3668 2550530 - 2550520 - G 86 -2.6 -6.11243 | opp_overlap 2550520 AGCTAATAAAAAAAA TATT ATG AATA TTATTATAGCATAGA CLD_2212 2550801 - 2550679 - | hypothetical protein CLD_2211 2551048 - 2550860 - | hypothetical protein TERM 3669 2551185 - 2551212 + r 78 -4.3 -5.54885 | opp_overlap 2551185 TATAAAGTAAAAAAA CTCAATCTA AGAATAAATA TAGATTGAG TTTTTTATTCATATT TERM 3670 2551212 - 2551185 - R 82 -4.3 -5.75822 | opp_overlap 2551185 TATAAAGTAAAAAAA CTCAATCTA AGAATAAATA TAGATTGAG TTTTTTATTCATATT cdsA 2552030 - 2551233 - | phosphatidate cytidylyltransferase TERM 3671 2551512 - 2551533 + g 73 -5.9 -4.62872 | overlap 2551514 2551531 GGCTCCTATTATTCC GCCTATAGA ACCT TCTATAGTC TTTTTAGGACTTACT TERM 3672 2551514 - 2551531 + g 74 -7.1 -3.92577 | overlap 2551512 CTCCTATTATTCCGC CTATAGA ACCT TCTATAG TCTTTTTAGGACTTA TERM 3673 2551700 - 2551689 - G 78 -3 -5.50313 | TATAAAACTAAAAAA TATG GGAA CATA TAAAAATCCTAAAAG uppS 2552813 - 2552055 - | undecaprenyl diphosphate synthase TERM 3674 2552869 - 2552854 - R 100 -9 -5.243 | opp_overlap 2552854 TAAATTATTAAAAAA CCTGCT AATA AGCAGG TTATAATGTTTATAT TERM 3675 2552854 - 2552869 + r 79 -9 -3.59627 | opp_overlap 2552854 TAAATTATTAAAAAA CCTGCT AATA AGCAGG TTATAATGTTTATAT frr 2553433 - 2552879 - | ribosome recycling factor pyrH 2554165 - 2553449 - | uridylate kinase TERM 3676 2554531 - 2554513 - R 100 -11.8 -5.41143 | opp_overlap 2554513 TATTTTTCAAAAAAA GAGAACAC TCA GTGTTCTC TTTTTTAATTATTTG TERM 3677 2554513 - 2554531 + r 100 -11.8 -5.4148 | opp_overlap 2554513 TATTTTTCAAAAAAA GAGAACAC TCA GTGTTCTC TTTTTTAATTATTTG tsf 2555463 - 2554540 - | translation elongation factor Ts TERM 3678 2555220 - 2555203 - G 75 -7.1 -4.08948 | opp_overlap 2555203 2555202, overlap 2555218 TAACTCTACAAATAA TTCGTTT ACTG AAACGAA ATCTGTTTCACAGTT TERM 3679 2555523 - 2555496 - R 75 -7.1 -4.32201 | opp_overlap 2555491 TTAACTAATTTAAAA GGTAAATGAGA GATTAG TCTCACCTACC TTATATTTTTCATTT rpsB 2556252 - 2555551 - | ribosomal protein S2 TERM 3680 2556462 - 2556491 + r 70 -5.1 -4.84673 | opp_overlap 2556465, overlap 2556464 2556465 2556469 CATAATTGTACTAAA AAATAAAGAAGTC CTAA GACTTCTTTACTA TTTTATCTTCTTTAA TERM 3681 2556464 - 2556489 + r 77 -7.7 -4.01819 | opp_overlap 2556465, overlap 2556462 2556465 2556469 TAATTGTACTAAAAA ATAAAGAAGTC CTAA GACTTCTTTAC TATTTTATCTTCTTT TERM 3682 2556465 - 2556488 + r 87 -11.2 -2.98651 | opp_overlap 2556465, overlap 2556464 2556462 2556469 AATTGTACTAAAAAA TAAAGAAGTC CTAA GACTTCTTTA CTATTTTATCTTCTT TERM 3683 2556488 - 2556465 - R 100 -11.2 -5.16237 | opp_overlap 2556465 2556464 2556462 2556469 AATTGTACTAAAAAA TAAAGAAGTC CTAA GACTTCTTTA CTATTTTATCTTCTT TERM 3684 2556469 - 2556484 + r 77 -7.6 -4.11862 | opp_overlap 2556465, overlap 2556465 2556464 2556462 GTACTAAAAAATAAA GAAGTC CTAA GACTTC TTTACTATTTTATCT codY 2557265 - 2556489 - | GTP-sensing transcriptional pleiotropic repressor CodY topA 2559574 - 2557472 - | DNA topoisomerase I dprA 2561031 - 2559946 - | DNA protecting protein DprA TERM 3685 2561130 - 2561111 - H 80 -3 -6.10295 | GCAATATAAAAAAAA TAAATATT TGGA AATACTTA TATATTTAAATAAAT TERM 3686 2561466 - 2561456 - g 91 -5.4 -5.71712 | opp_overlap 2561456 GCTGATATAAAAAAA GAAG GTT CTTC CTTTGATTTACCCAT TERM 3687 2562503 - 2562493 - g 70 -4 -5.00027 | opp_overlap 2562493 2562500 ACGAAAAACACAAAA GAAA AGA TTTC TTAATGAAGGAATTT CLD_2201 2561231 - 2562754 + | Mg chelatase-like protein CLD_2200 2562770 - 2563141 + | hypothetical protein TERM 3688 2563162 - 2563146 - T 85 -5.9 -5.56264 | opp_overlap 2563140 2563146, overlap 2563137 TTCAAATATAAAAAA TACACCT AAT AAGTGTA TTTTTATATTGGGGC rnhB 2564033 - 2563224 - | ribonuclease HII TERM 3689 2564291 - 2564267 - R 75 -8.7 -3.26568 | opp_overlap 2564268, overlap 2564266 2564268 CTATACTTATAAAAT TGGATACATTA CTC TAATGTATCCT TCAATTATATAATAT TERM 3690 2564268 - 2564290 + r 93 -12.2 -3.27164 | opp_overlap 2564267 2564266 2564268 TATACTTATAAAATT GGATACATTA CTC TAATGTATCC TTCAATTATATAATA TERM 3691 2564290 - 2564268 - R 86 -12.2 -2.55459 | opp_overlap 2564268, overlap 2564267 2564266 TATACTTATAAAATT GGATACATTA CTC TAATGTATCC TTCAATTATATAATA CLD_2198 2565208 - 2564330 - | GTP-binding protein lepB 2566037 - 2565513 - | signal peptidase I TERM 3692 2565995 - 2565982 - G 77 -4.5 -5.32944 | opp_overlap 2565982 GTTATAATTAAAAAA GCTGC TATC ACAGC TACTATTATAGATTT TERM 3693 2566085 - 2566066 - R 82 -5.7 -5.58454 | opp_overlap 2566057 2566066, overlap 2566046 CTTATATGAAAAAAA GGGACTT ATGCTA AAGCCCC TTATGTTTCATTATA rplS 2566440 - 2566096 - | ribosomal protein L19 TERM 3694 2566563 - 2566584 + r 76 -6.1 -4.85177 | opp_overlap 2566563 2566565 AAAATTTTTATTCAA TATTTTTTA CAAT TAAAAAATA TTTTTCCTATAATTT TERM 3695 2566602 - 2566619 + r 70 -4.3 -4.94147 | overlap 2566599 TTTCCTATAATTTTT TATTAAA ATCT TTTAATA TTTTCTTATCTTCTT trmD 2567313 - 2566591 - | tRNA (guanine-N1)-methyltransferase rimM 2567798 - 2567304 - | 16S rRNA processing protein RimM TERM 3696 2567537 - 2567524 - G 74 -6.7 -4.30995 | opp_overlap 2567524 2567523, overlap 2567521 TCTGCTATAAAATAA CTTCC TTTT GGAAG CTTTACAGAATTTTC TERM 3697 2567889 - 2567908 + r 91 -10.8 -3.49938 | opp_overlap 2567889, overlap 2567882 ATTATATATAAAAAA GAGTTAGG TGCA CCTAACTC TTCTAAATTATTTCA TERM 3698 2567908 - 2567889 - R 100 -10.8 -5.43414 | opp_overlap 2567889 2567882 ATTATATATAAAAAA GAGTTAGG TGCA CCTAACTC TTCTAAATTATTTCA CLD_2193 2568138 - 2567911 - | hypothetical protein rpsP 2568407 - 2568159 - | ribosomal protein S16 TERM 3699 2568210 - 2568222 + g 74 -3.4 -5.35222 | CTTAACTGTATCAGT TGGT TGCGC ACCA TTTTTTATCCATTTT TERM 3700 2568456 - 2568444 - R 70 -6.3 -4.19817 | TCTATTTATTTAAAA TGGTA ATT TACCA AATAAACCTTTTTTA ffh 2569787 - 2568438 - | signal recognition particle protein CLD_2190 2570132 - 2569800 - | DNA-binding protein TERM 3701 2570250 - 2570225 - R 100 -11.3 -4.98616 | opp_overlap 2570223 TCAAAATATTAAAAA GCTGTCAAGTA TTTT TACTTAACAGC CATAATGTTTTTTAT ftsY 2571267 - 2570356 - | signal recognition particle-docking protein FtsY TERM 3702 2571305 - 2571363 + r 100 -15.5 -3.40775 | gap 1 TATTATTTTATCCGA TGACTACCCGCTCTAATGCTCCCGCCTT TTTA AAAGTGGGAGTATTAGAGCGGCT-GCCA TCTTTGCATAACCAT smc 2575011 - 2571430 - | chromosome segregation protein SMC TERM 3703 2572490 - 2572500 + g 88 -4 -5.67063 | opp_overlap 2572481, overlap 2572481 ATATTAGTATCCATA GAAT ACA ATTC TTTTTTTATACTAAC TERM 3704 2572864 - 2572874 + g 76 -2.6 -5.51078 | TAGATTTTCCTCGTC TAAA GTT TTTA TTTTATTTTTATTTT TERM 3705 2574659 - 2574682 + g 76 -9.8 -2.72829 | overlap 2574658 TCTTTAAGTCTACAT TGAGTATTAT TTAT ATAATACTCA CTTTCACCAGATCTA TERM 3706 2575238 - 2575208 - R 79 -9.1 -3.51998 | opp_overlap 2575199, overlap 2575204 2575206 GTAAACTAAAATATA TATCCCCACCG AATATGAAA CAGTGGGGATA CTAAATTTTATATTA CLD_2187 2576364 - 2575273 - | radical SAM domain-containing protein TERM 3707 2576312 - 2576301 - G 75 -4.4 -5.31877 | ATTGATTACAAAAAA CACA ATTA TGTG GACATCCTTCCTGAG rnc 2577061 - 2576357 - | ribonuclease III TERM 3708 2577122 - 2577080 - R 87 -10.2 -3.30124 | opp_overlap 2577075 2577080 TTTCACTCCCTAGAA GTTCATTCTTCAGTGTATTT ATT AAATAAACTCAAGAATAAAC TTATCTTTTAATTAT TERM 3709 2577080 - 2577122 + r 77 -8 -4.03665 | opp_overlap 2577080, overlap 2577075 TTTCACTCCCTAGAA GTTCATTCTTCAGTGTATTT ATT AAATAAACTCAAGAATAAAC TTATCTTTTAATTAT TERM 3710 2577175 - 2577154 - R 89 -8.7 -4.66537 | TCTTTTAATATAAAA TCCCCGC TAATAAAG GCGGGGA TAAAAATCAATTATT acpP 2577419 - 2577186 - | acyl carrier protein TERM 3711 2577388 - 2577398 + g 82 -5.4 -5.42198 | overlap 2577386 ATACTTAATTGTTCT GCTA TTG TAGC TTTTATTTTTTCAAA plsX 2578504 - 2577497 - | fatty acid/phospholipid synthesis protein PlsX TERM 3712 2577664 - 2577654 - G 83 -6.8 -5.02074 | opp_overlap 2577654 2577653 TTAGCCCCTAAAAAA GGTG ATC CACC ATATTCTGTATAATC TERM 3713 2578111 - 2578098 - G 85 -8.1 -4.46212 | TCTGCTATCATAAAA GGAGC TTTA GCTCC TGGAAGTAAGGGTGC TERM 3714 2578583 - 2578566 - R 83 -4.1 -5.95946 | TTAACAAGAAAAAAA GAAAGCC TTAC GACTTCC TTTTTTATAATTATT rpmF 2578776 - 2578594 - | ribosomal protein L32 CLD_2182 2579290 - 2578790 - | ribosomal protein L32 family protein ackA 2580601 - 2579408 - | acetate kinase TERM 3715 2580001 - 2580013 + g 78 -6.3 -4.69664 | AAGTTATTACTTTAA GATCT TTA AGATC TTTTTCCATCATCTC pta 2581739 - 2580741 - | phosphate acetyltransferase TERM 3716 2581057 - 2581070 + g 72 -6.7 -4.0942 | overlap 2581048 TCTTTTGCTATTTTT GTAGC TTCT GCTAC TTTATCTACTAAGTC TERM 3717 2582014 - 2581989 - R 100 -11.3 -5.82388 | opp_overlap 2581989 AAACTTGAAAAAAAA CCAGGTAAAAT TTAA ATTTCACCTGG TTTTCAGCATTCAAT TERM 3718 2581989 - 2582014 + r 82 -9.1 -4.1466 | opp_overlap 2581989 AAACTTGAAAAAAAA CCAGGTAAAAT TTAA ATTTCACCTGG TTTTCAGCATTCAAT CLD_2179 2582952 - 2582074 - | hypothetical protein TERM 3719 2582149 - 2582165 + g 73 -8.1 -3.48738 | opp_overlap 2582149 2582148 2582151, overlap 2582148 AATTATAACAACAAT TACTAAC CAT GTTAGTA TATTTAATGGTAATG TERM 3720 2583307 - 2583282 - R 100 -14.9 -4.07568 | opp_overlap 2583270 2583282 GTTGTTCTTTTAAAA GAGCTCTACTT AGCA AAGTAGAGCTC TTTTTTAATTATTAA TERM 3721 2583282 - 2583307 + r 100 -14.9 -5.37865 | opp_overlap 2583282, overlap 2583270 GTTGTTCTTTTAAAA GAGCTCTACTT AGCA AAGTAGAGCTC TTTTTTAATTATTAA CLD_2177 2584038 - 2583319 - | putative D-proline reductase, PrdB subunit, selenocysteine-containing CLD_2176 2584343 - 2584068 - | hypothetical protein CLD_2175 2586466 - 2584352 - | putative D-proline reductase, PrdA proprotein TERM 3722 2585608 - 2585621 + g 72 -5.3 -4.76963 | GGTCTACATTGAATG CATCT TCAC AGATG TTTTCTCTTATATAA CLD_2174 2586668 - 2586498 - | hypothetical protein TERM 3723 2586685 - 2586701 + r 73 -8 -3.81307 | overlap 2586683 ACTGCAGCCGCTTGG CCTGGT CATTC ACCAGG TGTTTTACATTTTCC CLD_2173 2587808 - 2586690 - | putative electron transport protein TERM 3724 2586731 - 2586743 + g 76 -7.7 -3.89448 | CTGGTCCATTTCCTT TACCC TTT GGGTA TTCTATGTTTTTGCA TERM 3725 2587324 - 2587352 + g 80 -6.8 -4.72631 | GAAGCTATAGCTTCA GGATGTTTAGCT TTTAT AGCTATATATCC TTTTGTTGAGTTAGT TERM 3726 2588386 - 2588430 + r 93 -11.7 -3.21199 | gap 2, opp_overlap 2588397 2588425 TTATCCGATTACTAC CCGCTCTAATACTCCCATCTT CTTCA AAG-TGGGAGTAA-AGAGCGG TTACGTTCCTGGATA TERM 3727 2588503 - 2588464 - R 100 -14.6 -2.90615 | gap 1, opp_overlap 2588467 2588468 2588502, overlap 2588467 2588468 2588470 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAG ACTCCTAAGAAGTCTGTTA ATAAGCTTCAGATGG TERM 3728 2588467 - 2588500 + r 93 -11.9 -3.18681 | gap 1, opp_overlap 2588464 2588467 2588468 2588470, overlap 2588468 TCCCCTAAAGGATAA C-GACTTCTAAGGAGT AAG ACTCCTAAGAAGTCTG TTAATAAGCTTCAGA TERM 3729 2588499 - 2588467 - R 95 -12.1 -3.60151 | opp_overlap 2588467 2588468, overlap 2588464 2588468 2588470 TCCCCTAAAGGATAA CGACTTCTAAGGAGT AAG ACTCCTAAGAAGTCT GTTAATAAGCTTCAG TERM 3730 2588498 - 2588468 - R 100 -15.6 -2.75769 | opp_overlap 2588468 2588467, overlap 2588467 2588464 2588470 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAG ACTCCTAAGAAGTC TGTTAATAAGCTTCA TERM 3731 2588468 - 2588498 + r 100 -15.6 -3.15574 | opp_overlap 2588467 2588464 2588468 2588470, overlap 2588467 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAG ACTCCTAAGAAGTC TGTTAATAAGCTTCA TERM 3732 2588496 - 2588470 - R 89 -12.4 -2.92144 | opp_overlap 2588468 2588467, overlap 2588468 2588467 2588464 CCTAAAGGATAACGA CTTCTAAGGAGT AAG ACTCCTAAGAAG TCTGTTAATAAGCTT TERM 3733 2588539 - 2588508 - R 100 -16 -3.62522 | opp_overlap 2588502, overlap 2588527 GAAGTCTGTTAATAA GCTTCAGATGGAGT AAAA ACTCCCTCTGAAGC CAAGAATTCTGTTTA TERM 3734 2588625 - 2588590 - R 100 -14.4 -5.95539 | opp_overlap 2588593 2588595 2588596 CTTTAAATAAAAAAA TAAGAGTTTATACTAA AATT TTAGTACAAACTCTTA GCTCCAATTATAAGA TERM 3735 2588593 - 2588622 + r 78 -9.5 -3.08471 | opp_overlap 2588590, overlap 2588595 2588596 TAAATAAAAAAATAA GAGTTTATACTAA AATT TTAGTACAAACTC TTAGCTCCAATTATA CLD_2172 2589648 - 2588752 - | hypothetical protein TERM 3736 2589235 - 2589225 - G 76 -6.8 -4.50661 | AAGCTACAACTAAAA GGGA TAC TCCC ATACAAAATTGCACT TERM 3737 2589617 - 2589602 - G 86 -2.6 -6.01725 | AAGAAAAATAAAAAA TAGCTT GTTA AAACTA GTAATACTGATAATA TERM 3738 2589897 - 2589928 + r 82 -9 -4.15061 | opp_overlap 2589897 AGATTTAATAAAAAA GCTTATAATCTT TATTTTGT AAGATTATAAGC TTTCTATATAAATTA TERM 3739 2589928 - 2589897 - R 100 -9 -5.49234 | opp_overlap 2589897 AGATTTAATAAAAAA GCTTATAATCTT TATTTTGT AAGATTATAAGC TTTCTATATAAATTA CLD_2171 2591975 - 2589957 - | methyl-accepting chemotaxis protein TERM 3740 2592039 - 2592065 + r 80 -9.6 -3.2964 | opp_overlap 2592031 2592041, overlap 2592041 TATAAAATTATTTAG AAGATGTAACTT ATA AAGTTACATCTA TTATAAAAAAAATTT TERM 3741 2592063 - 2592041 - R 95 -12.2 -3.42124 | opp_overlap 2592041 2592039, overlap 2592031 TAAAATTATTTAGAA GATGTAACTT ATA AAGTTACATC TATTATAAAAAAAAT TERM 3742 2592041 - 2592063 + r 93 -12.2 -3.21395 | opp_overlap 2592031 2592041, overlap 2592039 TAAAATTATTTAGAA GATGTAACTT ATA AAGTTACATC TATTATAAAAAAAAT TERM 3743 2592926 - 2592947 + r 78 -5.9 -5.01732 | opp_overlap 2592926 2592931 CTGTAAAATAAAAAA GAGAATCTT TAAA AAGACTCTC TTTTTTACGAAAATT TERM 3744 2592947 - 2592926 - R 100 -8.1 -5.79595 | opp_overlap 2592926, overlap 2592931 CTGTAAAATAAAAAA GAGAATCTT TAAA AAGACTCTC TTTTTTACGAAAATT CLD_2169 2594082 - 2592997 - | hypothetical protein CLD_2168 2595235 - 2594159 - | hypothetical protein CLD_2167 2595647 - 2595441 - | hypothetical protein TERM 3745 2595804 - 2595788 - g 71 -2.3 -5.40004 | overlap 2595803 TATTAAATGAAAAAA TCCTTAA CAT TCAAAGA CATGGTTTTAATGAC TERM 3746 2596232 - 2596251 + G 88 -8.6 -4.37199 | GTTATAGGTGGACTC GTAGGAAG TGTA CTTCCTGC TTTATTAATTATAAT TERM 3747 2596729 - 2596714 - g 71 -4.7 -4.84363 | opp_overlap 2596714 TGAAACTAGTAAAAA TGGTG TTTTAC CACCA TTCTTAACAAAAACA CLD_2166 2595779 - 2597224 + | amino acid permease family protein TERM 3748 2597238 - 2597268 + T 100 -8.5 -5.59655 | opp_overlap 2597238 AAATGAATTAAAAAA TCTATCTGATTAT AAATA AAAATCAGATAGA TTTTTTATTAATTTA TERM 3749 2597268 - 2597238 - T 100 -8.5 -5.33921 | opp_overlap 2597238 AAATGAATTAAAAAA TCTATCTGATTAT AAATA AAAATCAGATAGA TTTTTTATTAATTTA TERM 3750 2597344 - 2597319 - T 81 -9.1 -3.92832 | opp_overlap 2597320, overlap 2597320 AAACTTTCTAAACAA GGGATTATGCA ATAA TGCATAATCCT TAAATTTTGTTACAT TERM 3751 2597343 - 2597320 - T 93 -12.6 -2.94976 | opp_overlap 2597320, overlap 2597319 AACTTTCTAAACAAG GGATTATGCA ATAA TGCATAATCC TTAAATTTTGTTACA TERM 3752 2597320 - 2597343 + T 95 -12.6 -3.45634 | opp_overlap 2597319 2597320 AACTTTCTAAACAAG GGATTATGCA ATAA TGCATAATCC TTAAATTTTGTTACA CLD_2165 2598246 - 2597359 - | hypothetical protein TERM 3753 2598122 - 2598134 + g 72 -6.3 -4.28115 | AAGCCTACTGCACCA GCTTT CCA AAAGC TTATTTCTTCTAAAT TERM 3754 2598666 - 2598634 - R 91 -7 -5.52986 | ATTTTATTAAAAAAA GATGGACTCCACGC AATAA ACATTGAGCCCATC TTTAAGTAATCATTG CLD_2164 2599823 - 2598816 - | proline racemase prdE 2600307 - 2599837 - | PrdE protein TERM 3755 2599891 - 2599873 - G 76 -6.1 -4.66833 | opp_overlap 2599850 2599873 TTTTAATTTTAAAAA TGCTAAA GCTTT TTTAGCA TCTATTGGCATAACA prdD 2601097 - 2600321 - | PrdD protein TERM 3756 2601413 - 2601374 - R 100 -13.2 -4.10552 | gap 1, opp_overlap 2601374 TTTTATTAAAGGAAA TGCAATAATG-AGTTCAGT AAA ACTGCACTACATTATTGCA TTTTTTATTTTTAAT TERM 3757 2601374 - 2601413 + r 100 -13.2 -5.95286 | gap 1, opp_overlap 2601374 TTTTATTAAAGGAAA TGCAATAATG-AGTTCAGT AAA ACTGCACTACATTATTGCA TTTTTTATTTTTAAT prdB 2602163 - 2601438 - | D-proline reductase, PrdB subunit, selenocysteine-containing TERM 3758 2601948 - 2601961 + g 72 -5.3 -4.7173 | TCCACCATGAGATAC CATCA TATC TGATG TTTTTGCATCTCCTG TERM 3759 2602046 - 2602063 + g 76 -9.9 -2.87259 | opp_overlap 2602037, overlap 2602044 2602051 2602053 AGTGAACTCCTGCTG CAGTAGC TATG GCTACTG TCATATCTTTTAGTT CLD_2159 2602514 - 2602239 - | hypothetical protein CLD_2158 2604631 - 2602523 - | putative D-proline reductase, PrdA proprotein CLD_2157 2604832 - 2604656 - | hypothetical protein TERM 3760 2604826 - 2604841 + g 71 -9 -2.74012 | CTCCATCTTTTTTTA GCTGCA TAAC TGCAGC TGCTTGGCCTGGTCA TERM 3761 2604849 - 2604865 + r 73 -8 -3.81307 | overlap 2604847 ACTGCAGCTGCTTGG CCTGGT CATTC ACCAGG TGTTTTGCATTTTCC CLD_2156 2605972 - 2604854 - | putative electron transport protein TERM 3762 2605928 - 2605941 + g 72 -6.7 -4.08064 | ACAAGATACATCTGG TGCAC CTAC GTGCA TTTTAAGGGAGAATT TERM 3763 2606421 - 2606365 - R 100 -22.3 -3.4033 | opp_overlap 2606365 2606371 2606382, overlap 2606371 2606382 AAATTATATATAATA GTAAAAGTTTATAAAAAGCTTATTACA TTA TGTAAAAAACTTTTTATAAACTTTTAC TATATTTATCCTTCA TERM 3764 2606365 - 2606421 + r 100 -20.1 -3.38415 | opp_overlap 2606365 2606371 2606382, overlap 2606371 2606382 AAATTATATATAATA GTAAAAGTTTATAAAAAGCTTATTACA TTA TGTAAAAAACTTTTTATAAACTTTTAC TATATTTATCCTTCA TERM 3765 2606415 - 2606371 - R 100 -15.5 -4.48263 | opp_overlap 2606371 2606365 2606382, overlap 2606365 2606382 TATATAATAGTAAAA GTTTATAAAAAGCTTATTACA TTA TGTAAAAAACTTTTTATAAAC TTTTACTATATTTAT TERM 3766 2606371 - 2606415 + r 100 -13.3 -4.47397 | opp_overlap 2606365 2606371 2606382, overlap 2606365 2606382 TATATAATAGTAAAA GTTTATAAAAAGCTTATTACA TTA TGTAAAAAACTTTTTATAAAC TTTTACTATATTTAT TERM 3767 2606592 - 2606543 - R 100 -17.7 -5.0916 | opp_overlap 2606547 2606549 2606550, overlap 2606550 TTTCTAATATAAAAA TAAAGAAGGAAATTCAATGATAT TTTT ATATCATTGAATTTCCCTGTTTA ATATAATTTTATTTA TERM 3768 2606547 - 2606588 + r 100 -11.9 -3.92694 | opp_overlap 2606543 2606550, overlap 2606549 2606550 TAATATAAAAATAAA GAAGGAAATTCAATGATAT TTTT ATATCATTGAATTTCCCTG TTTAATATAATTTTA TERM 3769 2606549 - 2606586 + r 100 -14.5 -3.53452 | opp_overlap 2606543 2606550, overlap 2606547 2606550 ATATAAAAATAAAGA AGGAAATTCAATGATAT TTTT ATATCATTGAATTTCCC TGTTTAATATAATTT TERM 3770 2606550 - 2606585 + r 100 -18 -2.70986 | opp_overlap 2606543 2606550, overlap 2606549 2606547 TATAAAAATAAAGAA GGAAATTCAATGATAT TTTT ATATCATTGAATTTCC CTGTTTAATATAATT TERM 3771 2606585 - 2606550 - R 100 -18 -4.56117 | opp_overlap 2606550 2606549 2606547, overlap 2606543 TATAAAAATAAAGAA GGAAATTCAATGATAT TTTT ATATCATTGAATTTCC CTGTTTAATATAATT CLD_2155 2607275 - 2606613 - | hypothetical protein CLD_2154 2608619 - 2607315 - | putative electron transport protein CLD_2153 2608618 - 2608734 + | hypothetical protein TERM 3772 2608903 - 2608922 + Tr 84 -9.4 -3.76952 | opp_overlap 2608903, overlap 2608907 TTTTATAATAAAAAA TAAAGGCA TTTC TGCCTTTA TTTAGATTGAATACA TERM 3773 2608922 - 2608903 - TR 100 -9.4 -5.55769 | opp_overlap 2608903 2608907 TTTTATAATAAAAAA TAAAGGCA TTTC TGCCTTTA TTTAGATTGAATACA TERM 3774 2609184 - 2609221 + Tr 75 -8.7 -3.27572 | opp_overlap 2609189 2609192, overlap 2609183 2609189 CGGTTGTCTACAGTC TGAAAGAATGAAGCA AAATCTAA TGCTTCATTCTTTAA ATTTATTATATATTT TERM 3775 2609216 - 2609189 - TR 75 -8.6 -3.59262 | opp_overlap 2609189 2609184 2609183, overlap 2609192 GTCTACAGTCTGAAA GAATGAAGCA AAATCTAA TGCTTCATTC TTTAAATTTATTATA TERM 3776 2609189 - 2609216 + Tr 78 -8.6 -3.94868 | opp_overlap 2609189 2609192, overlap 2609184 2609183 GTCTACAGTCTGAAA GAATGAAGCA AAATCTAA TGCTTCATTC TTTAAATTTATTATA CLD_2152 2609738 - 2609211 - | hypothetical protein CLD_2151 2610222 - 2609743 - | hypothetical protein TERM 3777 2610380 - 2610346 - R 100 -13.2 -4.8048 | opp_overlap 2610352, overlap 2610327 2610326 2610348 TTTTTATAGTAAAAA CATAAATCCATCTATA TGA TATAGATGGATTTATC AGATTGAAAACAAAA TERM 3778 2610378 - 2610348 - R 100 -15.8 -4.02302 | opp_overlap 2610352, overlap 2610327 2610326 2610346 TTTATAGTAAAAACA TAAATCCATCTATA TGA TATAGATGGATTTA TCAGATTGAAAACAA TERM 3779 2610352 - 2610374 + r 100 -12.2 -3.92522 | opp_overlap 2610348 2610346 TAGTAAAAACATAAA TCCATCTATA TGA TATAGATGGA TTTATCAGATTGAAA TERM 3780 2610391 - 2610431 + r 91 -12.9 -2.75982 | opp_overlap 2610391 2610396, overlap 2610396 TTATCAGATTGAAAA CAAAAGGCTTATGAGAAGT TAA ATTTTTCATAAGCCTTTTA ATATTTCTAATATAT TERM 3781 2610431 - 2610391 - R 95 -10.7 -4.24948 | opp_overlap 2610391 2610396, overlap 2610396 TTATCAGATTGAAAA CAAAAGGCTTATGAGAAGT TAA ATTTTTCATAAGCCTTTTA ATATTTCTAATATAT TERM 3782 2610396 - 2610426 + r 100 -12.8 -4.53036 | opp_overlap 2610396 2610391, overlap 2610391 AGATTGAAAACAAAA GGCTTATGAGAAGT TAA ATTTTTCATAAGCC TTTTAATATTTCTAA TERM 3783 2610426 - 2610396 - R 95 -8.4 -5.11836 | opp_overlap 2610391 2610396, overlap 2610391 AGATTGAAAACAAAA GGCTTATGAGAAGT TAA ATTTTTCATAAGCC TTTTAATATTTCTAA TERM 3784 2610663 - 2610631 - R 75 -5.6 -4.91511 | overlap 2610634 ATTTTAGCATAAAAA TAAGCTGTAGACTA TCTGG TTGTCTACAGCCTG AAACAATGGCATAAA TERM 3785 2610660 - 2610634 - R 93 -9.5 -4.56153 | overlap 2610631 TTAGCATAAAAATAA GCTGTAGACTA TCTGG TTGTCTACAGC CTGAAACAATGGCAT TERM 3786 2610667 - 2610686 + r 80 -3.5 -5.85011 | opp_overlap 2610667 GTCTACAGCCTGAAA CAATGGC ATAAAA GCCTTTG TTTTTTTAATTTTTA CLD_2150 2611127 - 2610699 - | PrdA domain-containing protein CLD_2149 2612468 - 2611158 - | putative electron transport protein TERM 3787 2612673 - 2612643 - R 75 -8.6 -3.55801 | opp_overlap 2612645 2612649, overlap 2612649 2612668 ATCAATTTTTTTAAA TTTAAATTAAATCA TAC TGATTTAATTTATA ATATAAAGTACTTCT TERM 3788 2612645 - 2612671 + r 83 -11.2 -2.64091 | opp_overlap 2612643 2612649 2612668, overlap 2612649 CAATTTTTTTAAATT TAAATTAAATCA TAC TGATTTAATTTA TAATATAAAGTACTT TERM 3789 2612667 - 2612649 - R 75 -7.6 -3.84451 | opp_overlap 2612645 2612649, overlap 2612643 TTTTTTAAATTTAAA TTAAATCA TAC TGATTTAA TTTATAATATAAAGT TERM 3790 2612649 - 2612667 + r 77 -7.6 -4.01888 | opp_overlap 2612649 2612643, overlap 2612645 TTTTTTAAATTTAAA TTAAATCA TAC TGATTTAA TTTATAATATAAAGT CLD_2148 2614398 - 2612644 - | sensory box sigma-54 dependent transcriptional regulator TERM 3791 2613515 - 2613525 + g 76 -5.4 -5.1287 | AGAACACTAGCAGAG GTAG GCG CTAC TTTTTTAGCTATAGC TERM 3792 2614961 - 2614973 + G 85 -2 -6.09196 | TACATTATATAGTCT TTCT TCTGC AGAA TTTTTTTCTTTTGGA CLD_2147 2614734 - 2615963 + | hypothetical protein TERM 3793 2616819 - 2616796 - g 100 -11.2 -5.09685 | opp_overlap 2616795, overlap 2616809 TAATACAGATAAAAA CCTAATAGAA GGAT TTCTATTAGG CTTAGTAGAAATGAC CLD_2146 2616023 - 2617189 + | nucleoside recognition domain-containing protein CLD_2145 2617714 - 2617190 - | hypothetical protein TERM 3794 2617259 - 2617283 + g 76 -2.8 -5.5353 | opp_overlap 2617263, overlap 2617263 CTCTACACTTTCTTC TAAAGAAGCC GTAAA GGCTTCTAAA TTTTTTCTTAATATA TERM 3795 2617279 - 2617263 - G 71 -8 -3.53563 | opp_overlap 2617263 2617259 ACACTTTCTTCTAAA GAAGCC GTAAA GGCTTC TAAATTTTTTCTTAA coaD 2618221 - 2617727 - | pantetheine-phosphate adenylyltransferase CLD_2143 2618780 - 2618223 - | putative methyltransferase recG 2621080 - 2619041 - | ATP-dependent DNA helicase RecG TERM 3796 2621135 - 2621125 - R 72 -4 -5.39905 | overlap 2621132 AGTAAAGAATAAAAA CTTA AAC TAAG AATCCCTTCCTAATA TERM 3797 2621215 - 2621169 - R 85 -10.3 -2.96274 | gap 1, opp_overlap 2621176 2621177 2621212 TTTTCTATAAGCAGA GTT-CTTGGCTTCAGAGGGAGT TTTC ACTCCCTCTGAAGCTTATTAAC AGAATTCTTAGGAGT TERM 3798 2621176 - 2621207 + r 100 -21.8 -3.62522 | opp_overlap 2621169, overlap 2621177 TAAGCAGAGTTCTTG GCTTCAGAGGGAGT TTTC ACTCCCTCTGAAGC TTATTAACAGAATTC TERM 3799 2621212 - 2621251 + r 73 -8.8 -2.90615 | gap 1, opp_overlap 2621169 2621220, overlap 2621216 2621217 2621219 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGAGAAAT TERM 3800 2621217 - 2621247 + r 79 -9.8 -2.75769 | opp_overlap 2621220, overlap 2621216 2621212 2621219 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGAG TERM 3801 2621244 - 2621220 - R 90 -10.1 -3.71552 | opp_overlap 2621219 2621217 2621216 2621212 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 3802 2621425 - 2621411 - R 73 -4.4 -5.23396 | opp_overlap 2621420 AAGAAGTAATAAAAA TTTAAA TTG TTTAAA TAAAGTTTAAATATA TERM 3803 2621472 - 2621437 - R 95 -12.2 -3.78141 | opp_overlap 2621442, overlap 2621442 TAAATAAAGTTTAAA TATAATAAAAAAAGCC CTTA GGCTTTTTTTATTCTA CAGACATTATAAAAT TERM 3804 2621442 - 2621467 + r 95 -12.1 -3.30338 | opp_overlap 2621437 2621442 AAAGTTTAAATATAA TAAAAAAAGCC CTTA GGCTTTTTTTA TTCTACAGACATTAT TERM 3805 2621467 - 2621442 - R 100 -12.1 -3.84619 | opp_overlap 2621442, overlap 2621437 AAAGTTTAAATATAA TAAAAAAAGCC CTTA GGCTTTTTTTA TTCTACAGACATTAT CLD_2141 2623090 - 2621465 - | DAK2 domain-containing protein TERM 3806 2621885 - 2621897 + g 76 -3.5 -5.44119 | TATAGTTTTAGTAGG TATAA CTA TTATA TTTTTTTCGGATAGC TERM 3807 2622999 - 2623012 + g 90 -3.9 -6.17268 | GGGAAAACATTTAGA GAATT TACA AATTC TTTTTTTTCTTCTAA CLD_2140 2623455 - 2623105 - | hypothetical protein rpmB 2623655 - 2623846 + | ribosomal protein L28 TERM 3808 2623842 - 2623891 + T 100 -9.7 -5.75538 | opp_overlap 2623836 2623856, overlap 2623844 2623856 AGGTACAACGTGCTA TATAACACAAAAAATGCAGTTGT TTAA ACAATTGCATTTTTTATTTTATG TTTTTATTTTTTAAC TERM 3809 2623844 - 2623889 + T 100 -10.1 -4.48934 | opp_overlap 2623836 2623856, overlap 2623842 2623856 GTACAACGTGCTATA TAACACAAAAAATGCAGTTGT TTAA ACAATTGCATTTTTTATTTTA TGTTTTTATTTTTTA TERM 3810 2623877 - 2623856 - T 85 -5.9 -5.53436 | opp_overlap 2623844 2623842 2623856 ATATAACACAAAAAA TGCAGTTGT TTAA ACAATTGCA TTTTTTATTTTATGT TERM 3811 2623856 - 2623877 + T 100 -8.1 -5.8901 | opp_overlap 2623856, overlap 2623844 2623842 ATATAACACAAAAAA TGCAGTTGT TTAA ACAATTGCA TTTTTTATTTTATGT CLD_2138 2624014 - 2623895 - | hypothetical protein TERM 3812 2624043 - 2624025 - R 78 -4.6 -5.48514 | ATCAATAAATAAAAA CTGTTATA AAA TTTAACAG CTGTATAATAAAATA CLD_2137 2624247 - 2624092 - | hypothetical protein TERM 3813 2624533 - 2624493 - R 95 -10.7 -4.09459 | opp_overlap 2624493, overlap 2624485 GTAAAAATCTAGAAA TGAGAGTATCTTAAAATAG ATT CAATTTTAAAACACCCTCA TTTTATTTTTGTATA TERM 3814 2624493 - 2624533 + r 72 -4.1 -5.38839 | opp_overlap 2624493 2624485 GTAAAAATCTAGAAA TGAGAGTATCTTAAAATAG ATT CAATTTTAAAACACCCTCA TTTTATTTTTGTATA CLD_2136 2625320 - 2624676 - | thiamine pyrophosphokinase TERM 3815 2624889 - 2624925 + g 85 -8.4 -4.40993 | TGACTTTCTAGGCTT TAATGAAATATCTTTA TCTGT TAAAAATATTTCATTA TTTTCATCCTTTATA TERM 3816 2625125 - 2625148 + g 70 -8.3 -3.10481 | overlap 2625124 TATCCATACATACTC CCTTTTCTT TAAAAT AAGAAAAGG CTTCTTTATCTATAG rpe 2625972 - 2625322 - | ribulose-phosphate 3-epimerase rsgA 2626844 - 2625966 - | ribosome small subunit-dependent GTPase A TERM 3817 2626723 - 2626764 + g 80 -9.6 -3.27565 | gap 1, opp_overlap 2626718 2626720 2626729, overlap 2626729 TCTACATAATCACCG ATCATAGGGGTAAGTTCAG TGTGC CTGAACTTACCCCT-TGCC TTACATTCTATAATT TERM 3818 2626759 - 2626729 - G 100 -18.5 -2.8194 | opp_overlap 2626723 2626729, overlap 2626718 2626720 TAATCACCGATCATA GGGGTAAGTTCAG TGTGC CTGAACTTACCCC TTGCCTTACATTCTA TERM 3819 2626729 - 2626759 + g 100 -18.5 -3.21705 | opp_overlap 2626718 2626729 2626720, overlap 2626723 TAATCACCGATCATA GGGGTAAGTTCAG TGTGC CTGAACTTACCCC TTGCCTTACATTCTA CLD_2133 2629009 - 2627051 - | protein kinase CLD_2132 2629736 - 2628987 - | protein phosphatase family protein CLD_2131 2630783 - 2629755 - | radical SAM protein TERM 3820 2629985 - 2629995 + g 70 -4 -4.88222 | overlap 2629980 GTTTTTTAGCTTCTT TGAT AGA ATCA TTTTTACCTTTTACT sun 2632123 - 2630795 - | ribosomal RNA small subunit methyltransferase B TERM 3821 2631431 - 2631449 + g 81 -2.5 -5.82281 | gap 1 CTGTACAGTAATATT CCCTTCTA TAAA TA-AAGGG TTTTTTTCTATGTTT TERM 3822 2631671 - 2631644 - G 71 -8.6 -2.85668 | opp_overlap 2631645 TATTTCTATACCATA TTGGCTTATAAA CATT TTTATAAGCCAT TTAGGATAGGAATAC TERM 3823 2631645 - 2631670 + g 95 -12.1 -3.60296 | opp_overlap 2631644 ATTTCTATACCATAT TGGCTTATAAA CATT TTTATAAGCCA TTTAGGATAGGAATA CLD_2129 2632860 - 2632144 - | putative neutral zinc metallopeptidase TERM 3824 2632456 - 2632474 + g 76 -6.8 -4.44667 | overlap 2632458 TTGGGAACTAATATT TACTATAG GAA CTATAGTG TTTCTTATTACAAGA TERM 3825 2632458 - 2632472 + g 71 -7.2 -3.82963 | overlap 2632456 GGGAACTAATATTTA CTATAG GAA CTATAG TGTTTCTTATTACAA fmt 2634119 - 2633178 - | methionyl-tRNA formyltransferase def 2634579 - 2634136 - | peptide deformylase priA 2636814 - 2634607 - | primosomal protein N' coaBC 2638140 - 2636953 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase rpoZ 2638360 - 2638142 - | DNA-directed RNA polymerase, omega subunit gmk 2638970 - 2638341 - | guanylate kinase TERM 3826 2638846 - 2638887 + g 70 -3.7 -5.06103 | gap 1, overlap 2638834 2638846 2638849 TCCTCTCCCTTTCTT GG-AGATCTAGTGGTGGCAG AAA CTGATACCCATAGGTCTTCC TTTTTTAAAAGTTCT CLD_2122 2639245 - 2638970 - | hypothetical protein CLD_2121 2640139 - 2639261 - | hypothetical protein TERM 3827 2640295 - 2640316 + r 76 -6.1 -4.87807 | ATAACACTATATTTT TATAATTAT TAAA ATAATTATA TTTTTAGTATCTTAA ansA 2641334 - 2640333 - | L-asparaginase, type II TERM 3828 2640988 - 2641021 + g 82 -6.9 -4.98857 | gap 1, overlap 2640997 AGTTCAGAACTGCTT CTCATAGCTCCTGTAA CTA TTACAGGT-TTATGAG TTTTTATAGTTAAAT TERM 3829 2640997 - 2641013 + g 88 -9.5 -4.10363 | overlap 2640988 CTGCTTCTCATAGCT CCTGTAA CTA TTACAGG TTTATGAGTTTTTAT TERM 3830 2641922 - 2641909 - R 72 -3.9 -5.40474 | opp_overlap 2641909 AGGGCTTCAAAAAAA TTTTC GATA GAAAA TTAATGCGGTAGCAT TERM 3831 2642165 - 2642197 + r 72 -8.4 -3.20878 | ATAGGACGTTTACTT AGCTCTGTTGCCAC AGGAC GTGGCATTAGAGCG TTAGCTTAAATATTA spoIVA 2643796 - 2642315 - | stage IV sporulation protein A CLD_2118 2644204 - 2644563 + | hypothetical protein TERM 3832 2644561 - 2644619 + T 93 -12.9 -2.96637 | gap 1, opp_overlap 2644567 2644570, overlap 2644567 ATTCTTAAGATAATG TAAAAAGCACTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAGCACTTTATA TATAATTAATATCTT TERM 3833 2644567 - 2644613 + T 100 -11.9 -4.17417 | gap 1, opp_overlap 2644567 2644570, overlap 2644561 AAGATAATGTAAAAA GCACTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAGCAC TTTATATATAATTAA TERM 3834 2644613 - 2644567 - T 100 -16.3 -4.8066 | gap 1, opp_overlap 2644561 2644567, overlap 2644570 AAGATAATGTAAAAA GCACTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAGCAC TTTATATATAATTAA TERM 3835 2644610 - 2644570 - T 100 -16.6 -3.29195 | gap 1, opp_overlap 2644567 2644561, overlap 2644567 ATAATGTAAAAAGCA CTAATCTAAAAGGTAGAAG ACAT CTTCTACC-TTTAGATTAG CACTTTATATATAAT CLD_2117 2645631 - 2644633 - | NAD-dependent glycerol-3-phosphate dehydrogenase family protein TERM 3836 2645478 - 2645496 + g 74 -3.2 -5.34055 | GTATTACTACTTTAG GTAAATAT TTT ATATTTTC TTTTTTGATATTTAT CLD_2116 2647121 - 2645802 - | GTP-binding protein CLD_2115 2648458 - 2647124 - | hypothetical protein phoU 2649562 - 2648909 - | phosphate transport system regulatory protein PhoU TERM 3837 2649156 - 2649169 + g 70 -5.3 -4.60713 | opp_overlap 2649156 TTTTCATTCACATAA GAATC CAAG GATTC TTTTATCATATTTTG pstB 2650341 - 2649592 - | phosphate ABC transporter, ATP-binding protein TERM 3838 2650368 - 2650382 + r 75 -3.6 -5.52909 | CTTAATTATCCCCTG TATACA TTT TGTGTA TTTTTTTGCCTATTA pstA 2651238 - 2650354 - | phosphate ABC transporter, permease protein PstA TERM 3839 2650908 - 2650892 - G 70 -5.1 -4.57205 | AAAAAGCCAAATAAA CCTACTA CTA TAGAAGG AAGGGAAGCCATAGT TERM 3840 2651186 - 2651175 - G 83 -2.2 -5.95946 | TTAATAATAAAAAAA CTAC CATT GCAG AAATAAAATATAATA pstC 2652161 - 2651238 - | phosphate ABC transporter, permease protein PstC TERM 3841 2651817 - 2651793 - G 73 -8.7 -3.05775 | opp_overlap 2651795 2651797, overlap 2651792 2651816 AGCAGGCTTTAAAAC TTTATCTCCTA ATT TAGGAGATATA TAATTTATAAATATA TERM 3842 2651795 - 2651815 + g 91 -11.3 -3.06711 | opp_overlap 2651793 2651792, overlap 2651797 CAGGCTTTAAAACTT TATCTCCTA ATT TAGGAGATA TATAATTTATAAATA TERM 3843 2651797 - 2651813 + g 76 -9.5 -3.08467 | opp_overlap 2651793 2651792, overlap 2651795 GGCTTTAAAACTTTA TCTCCTA ATT TAGGAGA TATATAATTTATAAA pstS 2653241 - 2652369 - | phosphate ABC transporter, phosphate-binding protein TERM 3844 2653422 - 2653474 + r 100 -7.5 -5.52079 | gap 1, opp_overlap 2653430, overlap 2653425 2653430 CTAAAATCCTATATA TAGAAAAATGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCA-TTTTATA TTTTTATTTTAATCT TERM 3845 2653425 - 2653472 + r 100 -11.7 -4.37486 | opp_overlap 2653430, overlap 2653422 2653430 AAATCCTATATATAG AAAAATGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCATTTTA TATTTTTATTTTAAT TERM 3846 2653467 - 2653430 - R 100 -12.3 -5.07275 | opp_overlap 2653425 2653422 2653430 CTATATATAGAAAAA TGAAGAAGTTTTTGTTA TAGG CACCAAAAACTTCTTCA TTTTATATTTTTATT TERM 3847 2653430 - 2653467 + r 100 -11.6 -5.0432 | opp_overlap 2653430, overlap 2653425 2653422 CTATATATAGAAAAA TGAAGAAGTTTTTGTT ATAGGC ACCAAAAACTTCTTCA TTTTATATTTTTATT CLD_2109 2655197 - 2653488 - | putative phosphate regulon sensor protein TERM 3848 2654619 - 2654640 + g 81 -4.5 -5.35222 | GTCTCCTCTTGCTAT TCTTGAAGT TACA AATTCAAGA TTTTTTATAGGTTTT TERM 3849 2654723 - 2654738 + g 91 -4.8 -5.9873 | opp_overlap 2654723, overlap 2654712 ATAATATTATAGAAA TATAGT ATTT ACTATA TTTTTTTTCTAATAA CLD_2108 2655907 - 2655209 - | putative phosphate regulon DNA-binding response regulator TERM 3850 2655881 - 2655891 + g 72 -4 -5.08824 | ATGTTCTTCATCGTC TACT ATA AGTA TTTTTTCCATAGCCA CLD_2107 2656637 - 2655918 - | hypothetical protein TERM 3851 2656783 - 2656814 + r 100 -16 -3.62522 | opp_overlap 2656776, overlap 2656784 TAAACAGAGTTCTTG GCTTCAGAGGGAGT TTTT ACTCCCTCTAAAGC TTATTAACAGAATTC TERM 3852 2656819 - 2656858 + r 73 -8.8 -2.91144 | gap 1, opp_overlap 2656776 2656827, overlap 2656823 2656824 2656826 CCCTCTAAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGGTAG TERM 3853 2656824 - 2656854 + r 79 -9.8 -2.75769 | opp_overlap 2656827, overlap 2656823 2656819 2656826 TAAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3854 2656851 - 2656827 - R 90 -10.1 -3.71552 | opp_overlap 2656826 2656824 2656823 2656819 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG TERM 3855 2656931 - 2656903 - R 93 -6.9 -5.86976 | opp_overlap 2656908 2656919 TTACAAAATAAAAAA CCCAATACTATTA CCA TAATAGCATTAAG TTTTTACATGCTTAA nrdR 2657423 - 2656968 - | NrdR family transcriptional regulator CLD_2105 2657817 - 2657554 - | PRC-barrel domain-containing protein TERM 3856 2657927 - 2657899 - R 100 -13.4 -5.77571 | opp_overlap 2657894 2657893 2657903 ATTAAAAAATAAAAA GCTACTGATAAA AAATA TTTATCAGTAGC TTAAAGTGTTCTCTA sigG 2658738 - 2657965 - | RNA polymerase sigma-G factor sigE 2659520 - 2658813 - | RNA polymerase sigma-E factor spoIIGA 2660329 - 2659532 - | sporulation factor SpoIIGA TERM 3857 2660452 - 2660503 + r 76 -4.2 -5.27399 | opp_overlap 2660457 2660487, overlap 2660445 2660464 2660490 TATGTCAATATAATT TATAATTTAATATATTATTTTTTT ATTT ACAAAAATAATATATTAAAAAGTA TTTTTTAATATATTA TERM 3858 2660498 - 2660457 - R 90 -10.7 -3.47583 | opp_overlap 2660452 2660464 2660490, overlap 2660487 CAATATAATTTATAA TTTAATATATTATTTTTTT ATTT ACAAAAATAATATATTAAA AAGTATTTTTTAATA TERM 3859 2660518 - 2660487 - R 100 -10.6 -4.87665 | opp_overlap 2660464 2660452 2660490 2660506, overlap 2660457 TTTTATTTACAAAAA TAATATATTAAAAA GTAT TTTTTAATATATTA TTAGAATATTTATAA TERM 3860 2660490 - 2660515 + r 73 -7.9 -3.69373 | opp_overlap 2660457 2660487, overlap 2660464 2660452 2660506 TATTTACAAAAATAA TATATTAAAAA GTAT TTTTTAATATA TTATTAGAATATTTA TERM 3861 2660634 - 2660614 - R 100 -14.1 -5.76633 | opp_overlap 2660614 TTACATATAAAAAAA GTAGGGAAC ATT GTTCCCTAC TTTATAATTACTTTC TERM 3862 2660614 - 2660634 + r 100 -14.1 -4.11938 | opp_overlap 2660614 TTACATATAAAAAAA GTAGGGAAC ATT GTTCCCTAC TTTATAATTACTTTC ftsZ 2661751 - 2660642 - | cell division protein FtsZ ftsA 2663027 - 2661774 - | cell division protein FtsA TERM 3863 2663166 - 2663182 + r 87 -10.9 -2.97122 | opp_overlap 2663166, overlap 2663161 AAAAAAGCAAAAAAA GGAAAGC TAT GCTTTCC TCTAGTTAACTTTTT TERM 3864 2663182 - 2663166 - R 100 -10.9 -5.88061 | opp_overlap 2663166 2663161 AAAAAAGCAAAAAAA GGAAAGC TAT GCTTTCC TCTAGTTAACTTTTT CLD_2099 2664458 - 2663184 - | glycosyl transferase, group 2 family protein TERM 3865 2663212 - 2663230 + g 76 -9 -3.52668 | TCTAGTTCATCTATA TTCATACT TCT AGTATGAA TTGTATGACTCCATT TERM 3866 2663629 - 2663617 - G 81 -4.9 -5.48303 | ATAAGCTTAAAAAAA TATCT ACT AGATA CATCTGCAAAACCTT TERM 3867 2664054 - 2664065 + g 86 -3 -5.91981 | TGCATCAAACACTGC TATG GCAT CATA TTTTTTTTCCATTTT CLD_2098 2664896 - 2665039 + | hypothetical protein TERM 3868 2665035 - 2665066 + T 90 -11.8 -3.03243 | opp_overlap 2665034 2665044, overlap 2665044 TAGATTATATGATAT TTTAAAAAAGGACC AAAA GGTCCTTTTTTTAA TATTACCAAATGCAT TERM 3869 2665057 - 2665044 - T 91 -8.1 -5.07567 | opp_overlap 2665044 2665035, overlap 2665034 TGATATTTTAAAAAA GGACC AAAA GGTCC TTTTTTTAATATTAC TERM 3870 2665044 - 2665057 + T 100 -8.1 -5.63374 | opp_overlap 2665034 2665044, overlap 2665035 TGATATTTTAAAAAA GGACC AAAA GGTCC TTTTTTTAATATTAC pilT 2666168 - 2665116 - | twitching motility protein aroE 2666946 - 2666170 - | shikimate 5-dehydrogenase TERM 3871 2666224 - 2666205 - G 71 -7.2 -3.84961 | CATTTAAGCACCAAA GACCTATA GCAC TATAGGCC TGAAAAATGAGCATT CLD_2095 2667375 - 2667085 - | DNA-dependent RNA polymerase sigma subunit CLD_2094 2667546 - 2667427 - | hypothetical protein CLD_2093 2667778 - 2668026 + | DNA-binding protein CLD_2092 2668226 - 2668471 + | DNA-binding protein CLD_2091 2668461 - 2668685 + | hypothetical protein TERM 3872 2668710 - 2668673 - T 77 -8.8 -3.43853 | gap 1, opp_overlap 2668673 2668662 2668680 2668709, overlap 2668680 TCAATTATGTAAATA TA-AAAAACTCTAAAGG TAATT CCTCTAGAGTTTTTGTA TTATAAATAATATTA TERM 3873 2668680 - 2668702 + T 80 -6.3 -5.1523 | opp_overlap 2668673 2668680, overlap 2668673 2668662 TGTAAATATAAAAAA CTCTAAAGG TAATT CCTCTAGAG TTTTTGTATTATAAA TERM 3874 2668702 - 2668680 - T 100 -8.5 -5.56264 | opp_overlap 2668680 2668673 2668662, overlap 2668673 TGTAAATATAAAAAA CTCTAAAGG TAATT CCTCTAGAG TTTTTGTATTATAAA CLD_2090 2669232 - 2668723 - | putative lipoprotein TERM 3875 2668839 - 2668850 + g 85 -5.8 -5.35222 | opp_overlap 2668838 GAACAGTACAATTAG CTCC TACT GGAG TTTTTTGTGGCTTTT CLD_2089 2669449 - 2669300 - | hypothetical protein CLD_2088 2670335 - 2669427 - | plasmid recombination enzyme TERM 3876 2670263 - 2670277 + Gg 81 -7.2 -4.65512 | GGCGTTGGTATCCTG CTATAG ATC CTATAG TTTTATACTTCTTTT CLD_2086 2670244 - 2670357 + | hypothetical protein CLD_2087 2671948 - 2670326 - | TraG/TraD family protein TERM 3877 2671825 - 2671854 + g 72 -2.9 -5.44638 | overlap 2671818 CTAGATCTTCTTTAG TAGAGAGTTTTGC ATTT GCTAAATTATCTA TTTTATTTTTCTTAT TERM 3878 2672018 - 2671974 - R 89 -12.4 -2.93073 | gap 1, opp_overlap 2671984 2671988, overlap 2671971 2671984 CCTTTTTAATAATTA GCCGTAGGAATGAATAATGGT GAAT ACCTTTATTCATTCCT-CGGA ACATAGGGGTTCTAA TERM 3879 2672405 - 2672376 - R 90 -6.7 -5.77677 | gap 1, opp_overlap 2672376 TAAAATAATAAAAAA GAGATATGATTATT CTA AATA-CCATATCTC TTTTACATCTTTATT CLD_2085 2672585 - 2672385 - | putative DNA-binding protein TERM 3880 2672815 - 2672788 - R 100 -7.1 -6.04324 | opp_overlap 2672788 TCAAAAAATAAAAAA GAAGTAGTTCC AATTAA GGAATTACTTC TTTTTATATTTATTC TERM 3881 2672788 - 2672815 + r 100 -9.3 -5.28414 | opp_overlap 2672788 TCAAAAAATAAAAAA GAAGTAGTTCC AATTAA GGAATTACTTC TTTTTATATTTATTC CLD_2084 2673226 - 2672825 - | resolvase domain-containing protein CLD_2083 2673517 - 2673272 - | hypothetical protein CLD_2082 2673717 - 2673535 - | hypothetical protein TERM 3882 2673945 - 2673976 + r 100 -9 -5.52347 | gap 1 TTATTTTTACCAGTA GCTTGATA-ACTATT CCC AGTAGTTTATCAAGC TTTTTTAGTTTTCTT TERM 3883 2674138 - 2674105 - R 90 -6.8 -5.7946 | opp_overlap 2674097 2674107 2674108, overlap 2674108 CTTCCAATAAAAAAA GAAGGTAGCTATAG AATAAG CTATAGCTACCATT TAATATTATTTTATT TERM 3884 2674107 - 2674136 + r 86 -9.4 -4.06825 | opp_overlap 2674105 2674108, overlap 2674097 2674108 TCCAATAAAAAAAGA AGGTAGCTATAG AATAAG CTATAGCTACCA TTTAATATTATTTTA TERM 3885 2674135 - 2674108 - R 100 -12.9 -4.96435 | opp_overlap 2674107 2674097 2674108, overlap 2674105 CCAATAAAAAAAGAA GGTAGCTATAG AATAAG CTATAGCTACC ATTTAATATTATTTT TERM 3886 2674108 - 2674135 + r 93 -12.9 -3.02468 | opp_overlap 2674108 2674105, overlap 2674107 2674097 CCAATAAAAAAAGAA GGTAGCTATAG AATAAG CTATAGCTACC ATTTAATATTATTTT CLD_2081 2674431 - 2674144 - | membrane associated protein CLD_2080 2675309 - 2674542 - | N-acetylmuramoyl-L-alanine amidase TERM 3887 2674695 - 2674710 + g 79 -7.6 -4.35091 | CTTTTCTCTAATATT TACACC GCTT GGTGTA TTTATTGTGCCTGTT CLD_2079 2675590 - 2675351 - | hypothetical protein CLD_2078 2675816 - 2675562 - | hypothetical protein TERM 3888 2675615 - 2675598 - GR 90 -6.3 -5.63504 | opp_overlap 2675598 AATTGCATAAAAAAA GAAGCTT ACTA AAGCTCC TACTGTTAATCCTAC TERM 3889 2675870 - 2675846 - R 88 -5 -5.89921 | opp_overlap 2675846 ATTATAATAAAAAAA GAACCCACAT TTAAT AAGTAGGTTC TTTTTTAAGTTGAAA CLD_2077 2676474 - 2675890 - | hypothetical protein TERM 3890 2676509 - 2676537 + r 70 -6.3 -4.26634 | opp_overlap 2676508 2676509 2676511 2676516, overlap 2676516 TTATTCTATCTAAAT TATAACATAAAAT TGT ATTTTATTTTATA TTTTCCCATTATTTT TERM 3891 2676653 - 2676702 + r 75 -9 -3.28552 | gap 1, opp_overlap 2676654 2676655 2676667, overlap 2676652 2676649 2676655 2676660 2676667 CTTTAATTATCCAAA AT-TCTAATAGAAAAGAACCTGT ATTAA ACAAGTTCTTTTCTATTAGATAA ATTATTTTTAAATTT TERM 3892 2676700 - 2676654 - R 100 -16.3 -4.23892 | opp_overlap 2676653 2676652 2676649 2676655 2676660 2676667, overlap 2676655 2676667 TTTAATTATCCAAAA TTCTAATAGAAAAGAACCTGT ATTAA ACAAGTTCTTTTCTATTAGAT AAATTATTTTTAAAT TERM 3893 2676699 - 2676655 - R 100 -19.8 -3.13853 | opp_overlap 2676653 2676652 2676649 2676655 2676660 2676667, overlap 2676654 2676667 TTAATTATCCAAAAT TCTAATAGAAAAGAACCTGT ATTAA ACAAGTTCTTTTCTATTAGA TAAATTATTTTTAAA TERM 3894 2676655 - 2676699 + r 100 -17.6 -2.79912 | opp_overlap 2676655 2676654 2676667, overlap 2676653 2676652 2676649 2676660 2676667 TTAATTATCCAAAAT TCTAATAGAAAAGAACCTGT ATTAA ACAAGTTCTTTTCTATTAGA TAAATTATTTTTAAA TERM 3895 2676660 - 2676694 + r 93 -11.7 -3.12021 | opp_overlap 2676655 2676654 2676667, overlap 2676655 2676653 2676652 2676649 2676667 TATCCAAAATTCTAA TAGAAAAGAACCTGT ATTAA ACAAGTTCTTTTCTA TTAGATAAATTATTT TERM 3896 2676687 - 2676667 - R 74 -6.2 -4.6821 | opp_overlap 2676660 2676655 2676653 2676652 2676649 2676667, overlap 2676655 2676654 AATTCTAATAGAAAA GAACCTGT ATTAA ACAAGTTC TTTTCTATTAGATAA CLD_2076 2677666 - 2676746 - | hypothetical protein CLD_2075 2678351 - 2677686 - | hypothetical protein TERM 3897 2678214 - 2678185 - G 76 -6.6 -4.50761 | ACTAATGTAAATAAA CCTTGTATTATA GTTAAG TATAATGCAAGG CAAACATCAAATCTA CLD_2074 2678832 - 2678344 - | hypothetical protein CLD_2073 2679242 - 2679051 - | hypothetical protein CLD_2072 2679603 - 2679244 - | putative chain A, Sc Smc1hd:Scc1-C complex, Atpgs CLD_2071 2681271 - 2679631 - | hypothetical protein TERM 3898 2680617 - 2680627 + g 70 -4 -4.99435 | ACTTAATATTATTTA TACT TTC AGTA TTTTTAGTTATTAAG CLD_2070 2682156 - 2681278 - | hypothetical protein CLD_2069 2683215 - 2682349 - | putative phage tail protein TERM 3899 2683154 - 2683185 + g 71 -7.4 -3.75418 | gap 1, opp_overlap 2683154, overlap 2683162 GATTCCAAAATAAAA GGACGAG-AGTTACT TAA AGTTACTTCTTGTCC TTTAGAATTTCTATA TERM 3900 2683185 - 2683154 - G 76 -5.2 -5.09259 | gap 1, opp_overlap 2683154 2683162 GATTCCAAAATAAAA GGACGAG-AGTTACT TAA AGTTACTTCTTGTCC TTTAGAATTTCTATA CLD_2068 2688592 - 2683232 - | phage related protein TERM 3901 2683821 - 2683845 + g 70 -4.4 -4.88407 | opp_overlap 2683805 2683821, overlap 2683816 TGATTATGTTCAAAA TCAATAGC AGACTTAAG GCTATTGA TTTTCTTCATTTCTT TERM 3902 2685006 - 2684978 - G 75 -7.5 -4.07568 | overlap 2684979 GCCTTCGCTTGAAAA TTTCCCTAGTTCT TGC ATAACTAGGGAAG GAGAATTTATACCAA TERM 3903 2685005 - 2684979 - G 83 -11 -3.04398 | overlap 2684978 CCTTCGCTTGAAAAT TTCCCTAGTTCT TGC ATAACTAGGGAA GGAGAATTTATACCA TERM 3904 2688644 - 2688625 - R 100 -8.6 -5.82036 | opp_overlap 2688625 ATAAGAAATAAAAAA GAGCCTAG TCTC CTAAGCTC TTATAACCAGCTACA TERM 3905 2688811 - 2688860 + r 87 -6 -5.63374 | opp_overlap 2688818, overlap 2688813 2688818 TGAACCTTTCCAATA TAAAAAAGCCAGCTCCAAGG-TAA TGTT TTATCCTTGGAG-TGGCTTATCTG TTTTTTTCATCTTCA TERM 3906 2688813 - 2688858 + r 75 -6.4 -4.44318 | opp_overlap 2688818, overlap 2688811 2688818 AACCTTTCCAATATA AAAAAGCCAGCTCCAAGG-TAA TGTT TTATCCTTGGAG-TGGCTTATC TGTTTTTTTCATCTT TERM 3907 2688818 - 2688853 + r 95 -10.7 -3.97983 | opp_overlap 2688818, overlap 2688813 2688811 TTCCAATATAAAAAA GCCAGCTCCAAGG-TAA TGTT TTATCCTTGGAG-TGGC TTATCTGTTTTTTTC TERM 3908 2688853 - 2688818 - R 100 -10.7 -5.47159 | opp_overlap 2688818 2688813 2688811 TTCCAATATAAAAAA GCCAGCTCCAAGG-TAA TGTT TTATCCTTGGAG-TGGC TTATCTGTTTTTTTC CLD_2067 2689180 - 2688854 - | hypothetical protein CLD_2066 2689797 - 2689216 - | phi13 family phage major tail protein CLD_2065 2690144 - 2689800 - | hypothetical protein CLD_2064 2690530 - 2690141 - | HK97 family phage protein TERM 3909 2690522 - 2690534 + g 74 -7.7 -3.83214 | TCCTTCTAATTCCAT GCTAG CCA CTAGC TTTCACTTCCTTTGC CLD_2063 2690849 - 2690523 - | putative phage head-tail adaptor CLD_2062 2691156 - 2690830 - | QlrG family phage protein TERM 3910 2691116 - 2691087 - G 100 -10.2 -4.87803 | opp_overlap 2691087 2691086 2691089 TAGCTGCAAATAAAA GAGAAGATAAAG TTACAT CTTCATCTTCTC CTTCTATCCTTAAAT CLD_2061 2692496 - 2691369 - | putative phage capsid protein TERM 3911 2691805 - 2691821 + g 100 -3.7 -6.34616 | TCACCTATTTTTGAT GTTGC AGTAAAC GCAAC TTTTTTTTCTTTTGC CLD_2060 2693247 - 2692489 - | putative Clp protease TERM 3912 2692624 - 2692634 + g 74 -6.8 -4.22132 | opp_overlap 2692623, overlap 2692621 TTTTTTATTTAATAG CTCC TTA GGAG TATTTTTATATTTAG CLD_2059 2694421 - 2693237 - | HK97 family phage portal protein TERM 3913 2693744 - 2693734 - G 70 -4 -4.87665 | opp_overlap 2693706 2693734 CCTGATCCACAAAAA GAAT TCC ATTC TTCTGAAACTTTCCT CLD_2058 2696137 - 2694437 - | putative phage terminase, large subunit TERM 3914 2694628 - 2694640 + g 76 -7.7 -4.00124 | opp_overlap 2694627 CCCATGTATACAATC CATCC TTA GGATG TTTCATTGTACCATC CLD_2057 2696598 - 2696134 - | P27 family phage terminase small subunit CLD_2056 2697106 - 2696870 - | hypothetical protein CLD_2055 2697670 - 2697197 - | hypothetical protein TERM 3915 2697396 - 2697406 + g 82 -6.8 -4.85653 | TGGTGCGCCGTATTT GCAG TTA CTGC TTTGTTTTCTATATA CLD_2054 2698092 - 2697670 - | putative non-transporter ABC protein TERM 3916 2698150 - 2698129 - R 93 -9.5 -4.55295 | opp_overlap 2698129, overlap 2698125 TTTTGCACAAATAAA TAGACACTC TATT GAGTGCCTA ACATTTTATTCTTTA CLD_2053 2698439 - 2698137 - | transglycosylase TERM 3917 2698615 - 2698589 - R 76 -2.4 -5.82172 | opp_overlap 2698593, overlap 2698593 2698595 ATTAAGATAAAAAAA TAAATCCAATAT CAA ATATTGAATTCC CTTCTAGCTTTATTC TERM 3918 2698611 - 2698593 - R 81 -5.4 -5.29742 | opp_overlap 2698593, overlap 2698589 2698595 AGATAAAAAAATAAA TCCAATAT CAA ATATTGAA TTCCCTTCTAGCTTT CLD_2052 2699145 - 2698600 - | phage integrase family site specific recombinase CLD_2051 2699357 - 2699142 - | hypothetical protein TERM 3919 2699412 - 2699384 - R 83 -6.1 -5.38054 | CTTCACAAATAAAAA GCACCTAAGAT TTTATTT ACCTTAAGTGC TTTTAGTACATACAC CLD_2050 2699968 - 2699540 - | hypothetical protein CLD_2049 2700122 - 2699952 - | hypothetical protein CLD_2048 2700414 - 2700124 - | hypothetical protein CLD_2047 2701566 - 2700571 - | phage integrase TERM 3920 2701634 - 2701668 + r 76 -2.1 -5.84011 | opp_overlap 2701636 GTAGTTTATTTTTAA GAGAGCTAACCGGTT GTCCA AACTAACTAGCTCTC TTTTTATTTTTTGTT CLD_2046 2701839 - 2701708 - | hypothetical protein CLD_2045 2702980 - 2701931 - | hypothetical protein CLD_2044 2703210 - 2703007 - | hypothetical protein CLD_2043 2703418 - 2703224 - | hypothetical protein CLD_2042 2703641 - 2703456 - | hypothetical protein CLD_2041 2704002 - 2703679 - | hypothetical protein CLD_2040 2704197 - 2704036 - | hypothetical protein CLD_2039 2704543 - 2704247 - | hypothetical protein CLD_2038 2705336 - 2704584 - | hypothetical protein CLD_2037 2705556 - 2705368 - | hypothetical protein CLD_2036 2705881 - 2705582 - | hypothetical protein CLD_2035 2706202 - 2705894 - | hypothetical protein CLD_2034 2706938 - 2706225 - | phage protein CLD_2033 2707794 - 2706928 - | gp49-like protein TERM 3921 2707385 - 2707401 + g 93 -5.1 -6.04953 | overlap 2707386 CTCTTTGTTACCTCA CCGTTAC TAA GTAACGC TTTTTTTCTTTGTCT TERM 3922 2707386 - 2707400 + g 83 -8.6 -4.19311 | overlap 2707385 TCTTTGTTACCTCAC CGTTAC TAA GTAACG CTTTTTTTCTTTGTC TERM 3923 2707719 - 2707741 + g 72 -7.8 -3.56092 | overlap 2707710 TTTTAATTTCTTTTT GCCTAAAGAA ATC TTCTTTAAGC TTTAACCAATAATAC TERM 3924 2707843 - 2707858 + r 77 -6.8 -4.70159 | TTATTTAATTATTGT GCTCCT GGCA GGGAGC TATTTTTTTCTTTTT CLD_2032 2708104 - 2707832 - | hypothetical protein TERM 3925 2707980 - 2707990 + g 83 -3.2 -5.80727 | ACCATATCTTCTATA TCCT CTT GGGA TTTTTTCTTATTTTT CLD_2031 2708303 - 2708121 - | hypothetical protein CLD_2030 2708565 - 2708305 - | hypothetical protein CLD_2029 2709377 - 2708577 - | phage protein TERM 3926 2709472 - 2709489 + r 80 -8.5 -4.23529 | opp_overlap 2709461 2709475 AAAGTTATATTTTTA TAAGGCT ATTC AGCCTTA TTTATCTCTTGGTAT CLD_2028 2709593 - 2709477 - | hypothetical protein CLD_2027 2709753 - 2709631 - | hypothetical protein CLD_2026 2709934 - 2709731 - | putative DNA-binding protein CLD_2025 2710140 - 2710505 + | putative DNA-binding protein CLD_2024 2710517 - 2712031 + | resolvase family protein TERM 3927 2712011 - 2712049 + T 82 -9.1 -4.18948 | opp_overlap 2712017, overlap 2712015 2712017 AAGGTATTTCCTAAA TTAAAACCCTTAAACAT ATAAC ATGTTTAAGGGTATTCA TTTCCTTCTTTGTCT TERM 3928 2712015 - 2712045 + T 90 -9.9 -3.66165 | opp_overlap 2712017, overlap 2712011 2712017 TATTTCCTAAATTAA AACCCTTAAACAT ATAAC ATGTTTAAGGGTA TTCATTTCCTTCTTT TERM 3929 2712017 - 2712043 + T 95 -12.5 -3.38638 | opp_overlap 2712017, overlap 2712015 2712011 TTTCCTAAATTAAAA CCCTTAAACAT ATAAC ATGTTTAAGGG TATTCATTTCCTTCT TERM 3930 2712043 - 2712017 - T 100 -13.2 -4.54727 | opp_overlap 2712017 2712015 2712011 TTTCCTAAATTAAAA CCCTTAAACATA TAA CATGTTTAAGGG TATTCATTTCCTTCT CLD_2023 2712471 - 2712037 - | RNA polymerase sigma-K factor TERM 3931 2712898 - 2712881 - R 100 -7.7 -5.4251 | opp_overlap 2712881 TTTATATATAAAAAA GAGCCCT GTTA AGAGCTC ATTTCTTTTTTAACT CLD_2022 2713076 - 2712897 - | hypothetical protein TERM 3932 2713208 - 2713230 + r 81 -10.6 -2.74415 | opp_overlap 2713208, overlap 2713207 TTCAACATAAGAAAA GGAGAGGTCA TTT TTACCTCTCC ATTAATTTCATCATC TERM 3933 2713230 - 2713208 - R 100 -10.6 -4.90381 | opp_overlap 2713208 2713207 TTCAACATAAGAAAA GGAGAGGTCA TTT TTACCTCTCC ATTAATTTCATCATC TERM 3934 2713529 - 2713512 - R 78 -5.6 -5.14563 | opp_overlap 2713512 2713511 2713504 TTTGGTATTAAAAAA GAGTCT ATACTA AGACTC CTTTTTAACTGATTT CLD_2021 2713658 - 2713521 - | hypothetical protein TERM 3935 2713774 - 2713788 + r 75 -8.6 -3.58726 | opp_overlap 2713774 TAATGCCATACAAAA GAAGAG GTC CTCTTC TTATCTCTCACCACC TERM 3936 2713788 - 2713774 - R 82 -8.6 -4.55118 | opp_overlap 2713774 TAATGCCATACAAAA GAAGAG GTC CTCTTC TTATCTCTCACCACC TERM 3937 2714373 - 2714405 + r 100 -15.8 -2.78049 | overlap 2714370 2714376 TAGTAGTTTTCACAG CGAGGGCTTGATAA AAAAA TTATCAAGCCCTTG TCAATTTTAATCAAT TERM 3938 2714376 - 2714402 + r 100 -13.9 -3.53184 | overlap 2714373 2714370 TAGTTTTCACAGCGA GGGCTTGATAA AAAAA TTATCAAGCCC TTGTCAATTTTAATC CLD_2020 2714902 - 2714510 - | hypothetical protein TERM 3939 2715368 - 2715407 + r 73 -4.4 -5.17786 | TTAATTAACAAAATA GATGTGGCTACAGTTATT ATAA AGTTATTGTAGTTGCATC TTTTTAATTTTATTA CLD_2019 2716342 - 2715674 - | hypothetical protein TERM 3940 2716362 - 2716395 + r 100 -8.4 -6.11392 | gap 1, opp_overlap 2716362 TATCCTCCTAAAAAA CACCTCTTAAATCTG ATATA CA-ATTTGAGAGGTG TTTTTTTATTTATTT TERM 3941 2716395 - 2716362 - R 78 -6.2 -5.0133 | gap 1, opp_overlap 2716362 TATCCTCCTAAAAAA CACCTCTTAAATCTG ATATA CA-ATTTGAGAGGTG TTTTTTTATTTATTT CLD_2018 2716897 - 2716421 - | hypothetical protein CLD_2017 2717224 - 2717024 - | acetyltransferase domain-containing protein TERM 3942 2717615 - 2717632 + r 71 -5.7 -4.55661 | opp_overlap 2717618, overlap 2717601 2717599 GGTAAATCTCTTAAT TTACTAT TGTT ATAGTAA TCTTTTTTTGTTACT CLD_2016 2718236 - 2717952 - | hypothetical protein CLD_2015 2719050 - 2718247 - | hypothetical protein CLD_2014 2719834 - 2719031 - | recombinase CLD_2013 2720561 - 2720713 + | hypothetical protein CLD_2012 2722601 - 2720931 - | penicillin-binding protein TERM 3943 2721079 - 2721093 + g 71 -8.6 -2.78933 | opp_overlap 2721075 2721078, overlap 2721085 AATCCTACAAACCAG GCATCT GAA AGATGC TCCATTTTACCTTTA TERM 3944 2721457 - 2721477 + g 73 -9.1 -2.65993 | overlap 2721449 2721461 TCTCCTTTTTCCATT TGAATAGCA CCC TGCTGTTCA TAGTGTAAATCTAAT TERM 3945 2721659 - 2721684 + g 77 -7.1 -4.35042 | gap 1, opp_overlap 2721663 2721664 2721667, overlap 2721664 2721665 ATTCTCCAGTACATT TAAAGCTATCCT TTA AGGATA-CTTTA TTATTTTCTAATGCA TERM 3946 2722040 - 2722066 + g 71 -3.1 -5.25656 | overlap 2722041 2722060 TATTATATATTCGCA TTTCTAAAGAC TCTTT GTCTTTAAAAG TTTTTTGATCATTTT TERM 3947 2722646 - 2722610 - R 100 -10.4 -5.19328 | opp_overlap 2722610 2722605 ATCTCATAATAAAAA CACCTCATTTTAGCTA AATTA TAACCAAAATAAGGTG TTTTATTCTAAATTA udk 2723307 - 2722687 - | uridine kinase CLD_2010 2724679 - 2723453 - | U32 family peptidase TERM 3948 2724643 - 2724661 + g 73 -3.8 -5.27779 | overlap 2724646 TTTCTAAATTCCCTG CTGGAGCT AAA AGTTCTGG TTTTTTCATATTAAG CLD_2009 2725328 - 2724672 - | O-methyltransferase family protein CLD_2008 2726442 - 2725411 - | hypothetical protein TERM 3949 2726471 - 2726499 + r 79 -8.9 -3.70068 | opp_overlap 2726471 2726475, overlap 2726478 ATAGGTTAATATAGA CAAACAACCAGCT CTA AGCTAGTTGTTCG TTTAGAATTATAATG TERM 3950 2726499 - 2726471 - R 95 -13.3 -3.10513 | opp_overlap 2726471 2726478, overlap 2726475 ATAGGTTAATATAGA CAAACAACCAGCT CTA AGCTAGTTGTTCG TTTAGAATTATAATG TERM 3951 2726495 - 2726475 - R 95 -10.5 -4.21343 | opp_overlap 2726471 2726478, overlap 2726471 GTTAATATAGACAAA CAACCAGCT CTA AGCTAGTTG TTCGTTTAGAATTAT typA 2728346 - 2726520 - | GTP-binding protein TypA TERM 3952 2726638 - 2726650 + g 70 -4.1 -4.87665 | opp_overlap 2726637, overlap 2726637 2726639 ACAAATTCAAGACAT TGTTC TAG GGACA TTTTTGTCACTGGAA TERM 3953 2726639 - 2726666 + g 73 -9.2 -2.65279 | opp_overlap 2726637, overlap 2726638 2726637 CAAATTCAAGACATT GTTCTAGGGACA TTTT TGTCACTGGAAC TAACTTTAAAGCTTC TERM 3954 2728594 - 2728573 - R 100 -10.3 -5.47821 | opp_overlap 2728573 2728572 ATTTACTCAAAAAAA TTGGATACT TCCT AGTATCCAA CTTGGTTCACCTTAT TERM 3955 2728573 - 2728594 + r 81 -10.3 -2.62513 | opp_overlap 2728573, overlap 2728572 ATTTACTCAAAAAAA TTGGATACT TCCT AGTATCCAA CTTGGTTCACCTTAT TERM 3956 2728897 - 2728859 - R 85 -8.4 -4.68424 | opp_overlap 2728859 TAATTTAGTTAAAAA GCTATGAATTTGAAACAT TAT ATTTCTAAAATTCATAGC TTACTTTTTTTAAAA CLD_2006 2730696 - 2728987 - | RNA-metabolizing metallo-beta-lactamase family protein TERM 3957 2729762 - 2729778 + g 72 -8.1 -3.25223 | TCTCCTTGACTTCCT GTAGTTA TTA TAACTAC TTGGTCATCTGGATA TERM 3958 2729794 - 2729824 + g 80 -2.1 -5.77632 | gap 1, overlap 2729796 TTGGTCATCTGGATA TTTATTTAT-AGCA TCTA TGCTTATAAATATA TTTTTTTCTGCTTTT CLD_2005 2731196 - 2730744 - | FUR family transcriptional regulator CLD_2004 2731572 - 2731318 - | hypothetical protein CLD_2003 2731999 - 2731586 - | hypothetical protein TERM 3959 2732112 - 2732096 - R 75 -6.6 -4.52589 | TCTCTTTATACAAAA CTCCTA TTGCG TAGGAG TAAGCGATTCACACC TERM 3960 2732175 - 2732200 + r 100 -13.5 -5.75822 | opp_overlap 2732175 2732181, overlap 2732181 TTTCCATATTTAAAA TAAAAATGCCC TACA GGGCATTTTTA TTTTTTTAATTTATC TERM 3961 2732200 - 2732175 - R 100 -13.5 -4.2349 | opp_overlap 2732175 2732181, overlap 2732181 TTTCCATATTTAAAA TAAAAATGCCC TACA GGGCATTTTTA TTTTTTTAATTTATC TERM 3962 2732194 - 2732181 - R 100 -8.1 -5.48213 | opp_overlap 2732175 2732181, overlap 2732175 TATTTAAAATAAAAA TGCCC TACA GGGCA TTTTTATTTTTTTAA TERM 3963 2732181 - 2732194 + r 100 -8.1 -5.86609 | opp_overlap 2732181 2732175, overlap 2732175 TATTTAAAATAAAAA TGCCC TACA GGGCA TTTTTATTTTTTTAA CLD_2002 2732457 - 2732206 - | hypothetical protein alaS 2735211 - 2732572 - | alanyl-tRNA synthetase TERM 3964 2735271 - 2735255 - R 87 -3.7 -6.17268 | overlap 2735256 TTACAATAAAAAAAA CCTTCAA TCC CTAAAGG GACGAAAGTTATATT CLD_2000 2736735 - 2735707 - | hypothetical protein CLD_1999 2737236 - 2736748 - | PRC-barrel domain-containing protein TERM 3965 2737365 - 2737332 - R 100 -9.8 -5.52384 | opp_overlap 2737339 2737355, overlap 2737339 GTTTTATCAAAAAAA TAAAAAATACCCTC TCTAAT GAGGGTATTTTTAA AATATCTTATATAAA TERM 3966 2737358 - 2737339 - R 100 -7.9 -6.12458 | opp_overlap 2737339 2737355, overlap 2737332 CAAAAAAATAAAAAA TACCCTC TCTAAT GAGGGTA TTTTTAAAATATCTT TERM 3967 2737339 - 2737358 + r 83 -7.9 -4.6644 | opp_overlap 2737332 2737339, overlap 2737355 CAAAAAAATAAAAAA TACCCTC TCTAAT GAGGGTA TTTTTAAAATATCTT CLD_1998 2737846 - 2737418 - | putative iron-sulfur cluster assembly protein iscS 2739041 - 2737848 - | cysteine desulfurase CLD_1996 2739480 - 2739034 - | rrF2 family protein CLD_1995 2740950 - 2739700 - | AAA family ATPase TERM 3968 2740998 - 2740970 - R 86 -7.5 -4.7373 | opp_overlap 2740970 TCACCTCACTAAAAA GACTTTAACTCTC ATT GTAAGTTAAAGCC CTTGTTTTATCAAGT TERM 3969 2741099 - 2741055 - R 87 -10.2 -3.34988 | gap 1, opp_overlap 2741062 2741096, overlap 2741053 TCATCTATAAACAGA GTT-CTTAGCTTCAGAGGGAA TCTA CTCCCTCTGAAGCTTATTAAC AGAATTCTTAGGAGT TERM 3970 2741062 - 2741091 + r 100 -16.6 -3.62522 | opp_overlap 2741055 2741053 TAAACAGAGTTCTTA GCTTCAGAGGGA ATCTAC TCCCTCTGAAGC TTATTAACAGAATTC TERM 3971 2741096 - 2741135 + r 73 -8.8 -2.90615 | gap 1, opp_overlap 2741055 2741053 2741104, overlap 2741100 2741101 2741103 CCCTCTGAAGCTTAT TAACAGAATTCTTAGGAGT TTT ACTCCTTAGAAGTC-GTTA TCCTTTAGGGGAAAT TERM 3972 2741101 - 2741131 + r 79 -9.8 -2.75769 | opp_overlap 2741104, overlap 2741100 2741096 2741103 TGAAGCTTATTAACA GAATTCTTAGGAGT TTT ACTCCTTAGAAGTC GTTATCCTTTAGGGG TERM 3973 2741128 - 2741104 - R 90 -10.1 -3.71552 | opp_overlap 2741103 2741101 2741100 2741096 AGCTTATTAACAGAA TTCTTAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG hisK 2742115 - 2741348 - | histidinol-phosphatase TERM 3974 2742370 - 2742358 - R 73 -3.5 -5.51402 | overlap 2742369 ATATAGGTAAAAAAA TAATT TTA AATTA ATATCTATATTATAC CLD_1993 2743349 - 2742441 - | auxin efflux carrier family protein TERM 3975 2742597 - 2742628 + g 78 -10.4 -2.74563 | opp_overlap 2742596 TAATATTACACATAT TTCTAGTAAAAGCT TGTC AGCTTTTACTACAA TCATTAAAATATAAA TERM 3976 2743440 - 2743407 - R 82 -5.5 -5.45802 | gap 1, opp_overlap 2743407 2743428, overlap 2743408 TTTTCAAAAGAAAAA TCCCCCT-TTTTATTA TTA TACTAAAAAAGGAGGA TCTTTTTATATGTTA TERM 3977 2743438 - 2743408 - R 71 -7 -3.86397 | opp_overlap 2743407 2743428, overlap 2743407 TTTCAAAAGAAAAAT CCCCCTTTTTATTA TTA TACTAAAAAAGGAG GATCTTTTTATATGT CLD_1992 2744323 - 2743457 - | DegV family protein TERM 3978 2744871 - 2744885 + G 89 -8.6 -4.57353 | CCAAAGAACATTGTG TTGCCT GTG AGGCAA TTTTATCTAATGAAA CLD_1991 2744651 - 2745235 + | hypothetical protein TERM 3979 2745339 - 2745309 - T 95 -12.8 -3.63046 | opp_overlap 2745314, overlap 2745314 ATTATAAGTATATAA TAAAAGCAGGAATT TTC AATTCCTGCTTTTT AATTTACACTAAATT TERM 3980 2745314 - 2745334 + T 100 -12.7 -4.99134 | opp_overlap 2745309 2745314 AAGTATATAATAAAA GCAGGAATT TTC AATTCCTGC TTTTTAATTTACACT TERM 3981 2745334 - 2745314 - T 100 -12.7 -4.86822 | opp_overlap 2745314, overlap 2745309 AAGTATATAATAAAA GCAGGAATT TTC AATTCCTGC TTTTTAATTTACACT TERM 3982 2745383 - 2745365 - T 72 -6 -4.47307 | overlap 2745366 2745379 AAATTAATATGAAAA CCTCCTAT TAC ATAGGAGT AAGCCACTCACGCCA TERM 3983 2745382 - 2745366 - T 80 -9.5 -3.26758 | overlap 2745365 2745379 AATTAATATGAAAAC CTCCTAT TAC ATAGGAG TAAGCCACTCACGCC CLD_1990 2746411 - 2745422 - | ornithine cyclodeaminase family protein TERM 3984 2746469 - 2746420 - R 71 -8.3 -3.05709 | opp_overlap 2746420 2746452, overlap 2746419 2746417 TAAGCATAAAAATAC CTCCATAATATAATATTAAAC TCTTATAT ATATAATATTACATTATGGAG TATTATTAAATAGGA CLD_1989 2747900 - 2746533 - | sodium:alanine symporter family protein TERM 3985 2747646 - 2747619 - G 89 -9.2 -4.24606 | opp_overlap 2747626 AATCCACATCCAAAA TATAGCTCCTGG TCCA CCAGATGCTATA GCTGTTGCAGATCCA TERM 3986 2748257 - 2748277 + r 81 -7.1 -4.75289 | opp_overlap 2748245 2748257 2748272, overlap 2748254 GCATTTAACAAATAA TTTTTAATT ATT AATTAAAAA TTTTATATTATACTG TERM 3987 2748277 - 2748257 - R 75 -7.1 -4.22554 | opp_overlap 2748254 2748257, overlap 2748245 2748272 GCATTTAACAAATAA TTTTTAATT ATT AATTAAAAA TTTTATATTATACTG CLD_1988 2749949 - 2748615 - | sodium:alanine symporter family protein TERM 3988 2749695 - 2749668 - G 74 -7 -4.24606 | opp_overlap 2749675 AACCCACATCCAAAA TATAGCTCCTGG GCCT CCAGCTGCTATA GCTGTAGCAGCTCCT TERM 3989 2750389 - 2750375 - g 70 -4.3 -4.97402 | TAAAATTTAGAAAAA GTGAT GAAAA ATCAC ATGTTAGAATTCTTC CLD_1987 2750326 - 2750979 + | hypothetical protein TERM 3990 2751062 - 2751022 - T 100 -7.8 -5.40474 | opp_overlap 2751024 2751060, overlap 2751006 2751024 ATTTTTTTAAAAAAA CACCCTATTTAGTTATAA TCTCT CTTTAACTAAATAGGGTT TTTAATTTATAAAAA TERM 3991 2751060 - 2751024 - T 95 -10.4 -4.34482 | opp_overlap 2751024, overlap 2751022 TTTTTTAAAAAAACA CCCTATTTAGTTATAA TCTCT CTTTAACTAAATAGGG TTTTTAATTTATAAA TERM 3992 2751024 - 2751060 + T 100 -9.7 -5.04601 | opp_overlap 2751024 2751022 TTTTTTAAAAAAACA CCCTATTTAGTTATA ATCTCTC TTTAACTAAATAGGG TTTTTAATTTATAAA CLD_1986 2751593 - 2751117 - | copper amine oxidase domain-containing protein CLD_1985 2755719 - 2751958 - | phosphoribosylformylglycinamidine synthase CLD_1984 2757266 - 2755917 - | MATE efflux family protein TERM 3993 2756284 - 2756270 - G 76 -3.6 -5.42975 | TTATAGAAATAAAAA CCATAA ATA TTATAG CTGATCTTAATGTAA CLD_1983 2759740 - 2757263 - | putative phosphoenolpyruvate synthase TERM 3994 2757626 - 2757614 - G 77 -7.7 -4.15565 | opp_overlap 2757613 CTCATTATCGTAAAA GGCAT CTA ATGCC ATCTGCTCCCAAAGT TERM 3995 2759395 - 2759376 - G 81 -10 -3.53012 | opp_overlap 2759376 2759374 CTTGCTTCCGGTAAA TCCTCGGC TGTT GCCGAAGA TCTTACTGCTAAGTG TERM 3996 2759516 - 2759540 + g 95 -11.7 -3.45764 | opp_overlap 2759522, overlap 2759513 TTCAGTTTTACCCTT TATAGATAAAG TTT CTTTATCTATA TTACTAATTTTTTGT CLD_1982 2760020 - 2759745 - | acyl carrier protein-like protein CLD_1981 2761564 - 2760026 - | putative acyl-CoA synthetase TERM 3997 2761433 - 2761447 + g 88 -5.8 -5.55769 | opp_overlap 2761432, overlap 2761432 ACTCATTTTATTAAT CAATAT TTG ATATTG TTTTTTATTGTACAC CLD_1980 2762591 - 2761581 - | putative 3-oxoacyl-(acyl-carrier-protein) synthase III CLD_1979 2763457 - 2762600 - | putative bacT protein CLD_1978 2765327 - 2763498 - | putative nonribosomal peptide synthetase CLD_1977 2765878 - 2765366 - | acetyltransferase TERM 3998 2765495 - 2765511 + g 71 -2.3 -5.48213 | CATAGTATTACTACT TTTTACT AAA AGAAAAA TTTTTATTTTGGGTA TERM 3999 2765729 - 2765745 + g 85 -8.1 -4.61199 | TCTGTATGCTTTTTT CAGTATT TCT AATACTG TTTTATATGTAGGAT CLD_1976 2766130 - 2765882 - | D-alanyl carrier protein,-like protein CLD_1975 2767155 - 2766139 - | hypothetical protein CLD_1974 2768345 - 2767152 - | putative seryl-tRNA synthetase TERM 4000 2767432 - 2767444 + g 90 -4.9 -5.73339 | overlap 2767432 GATTCACCTATAATT TGAAA AAA TTTCA TTTTTTTATAATTAT TERM 4001 2768017 - 2768039 + g 71 -7.8 -3.50393 | opp_overlap 2768020, overlap 2768020 AAAAACAATCCACTA TAAGCAAAAG ATC CTTTTGCTAA TTCTCTCACATCACC TERM 4002 2768036 - 2768020 - G 79 -9.5 -3.45434 | opp_overlap 2768017 2768020 AACAATCCACTATAA GCAAAAG ATC CTTTTGC TAATTCTCTCACATC TERM 4003 2768020 - 2768036 + g 75 -9.5 -2.89298 | opp_overlap 2768020, overlap 2768017 AACAATCCACTATAA GCAAAAG ATC CTTTTGC TAATTCTCTCACATC CLD_1973 2769104 - 2768364 - | hypothetical protein TERM 4004 2769481 - 2769453 - R 100 -9.8 -5.36441 | opp_overlap 2769453 TTTTTACATAAAAAA CACTTGAAATTC TCCTT AAATTTCAAGTG TTCTAAAATTGTTTT TERM 4005 2769453 - 2769481 + r 77 -9.1 -3.41422 | opp_overlap 2769453 TTTTTACATAAAAAA CACTTGAAATT CTCCTTA AATTTCAAGTG TTCTAAAATTGTTTT TERM 4006 2769521 - 2769552 + r 95 -11.8 -3.46611 | opp_overlap 2769521 2769526, overlap 2769526 TTGTATATCAAAAAA TAAAAGGAAGAATG TTTC CATTCTTCCTTTCA TCTTATATATTTAAT TERM 4007 2769552 - 2769521 - R 100 -14 -5.21709 | opp_overlap 2769521 2769526, overlap 2769526 TTGTATATCAAAAAA TAAAAGGAAGAATG TTTC CATTCTTCCTTTCA TCTTATATATTTAAT TERM 4008 2769526 - 2769547 + r 100 -11.7 -3.99878 | opp_overlap 2769521 2769526, overlap 2769521 TATCAAAAAATAAAA GGAAGAATG TTTC CATTCTTCC TTTCATCTTATATAT TERM 4009 2769547 - 2769526 - R 100 -11.7 -5.45813 | opp_overlap 2769526 2769521, overlap 2769521 TATCAAAAAATAAAA GGAAGAATG TTTC CATTCTTCC TTTCATCTTATATAT argF 2770571 - 2769570 - | ornithine carbamoyltransferase TERM 4010 2769974 - 2770000 + g 70 -5.2 -4.64861 | opp_overlap 2769980, overlap 2769977 CTATTTCTTTGCATT TAGCAACTAATG TAG CATCAGTTGGTA TTTCTTTTGGAGAAA TERM 4011 2770687 - 2770744 + r 100 -15.3 -4.21275 | opp_overlap 2770701, overlap 2770692 TACTACTCTTGTACC TGAAGTTCCATTAATAGCGTCTTTTGC TTTT GCAAGGGATGCTATTAATGCAATTTTA TTTTCGCTAGATTGA arcC 2771610 - 2770666 - | carbamate kinase TERM 4012 2770692 - 2770739 + g 100 -15.2 -5.10933 | opp_overlap 2770701, overlap 2770687 CTCTTGTACCTGAAG TTCCATTAATAGCGTCTTTTGC TTTT GCAAGGGATGCTATTAATGCAA TTTTATTTTCGCTAG TERM 4013 2771923 - 2771964 + r 100 -7.7 -5.51046 | gap 1, opp_overlap 2771922 2771923 2771938 CATAAAGTTTTAAAT TCCT-TCCTAAAAATATAAA AGT TTTATGTTTTTAGAAGAGGA TTTTTTATGTATTTA TERM 4014 2772114 - 2772145 + r 90 -11 -3.18514 | gap 1, opp_overlap 2772113 2772111 2772114, overlap 2772111 2772109 ATATCACAAGAATAT GGGCTTATGCTCCTG TTT TGGGA-CATAAGCCC TATCTATTATGTGTA TERM 4015 2772145 - 2772114 - R 83 -10.9 -2.70404 | opp_overlap 2772114 2772111 2772109, overlap 2772113 2772111 ATATCACAAGAATAT GGGCTTATGCTCC TGTTTT GGGACATAAGCCC TATCTATTATGTGTA glyA 2773415 - 2772174 - | serine hydroxymethyltransferase CLD_1969 2773589 - 2774359 + | hypothetical protein CLD_1968 2774356 - 2774844 + | hypothetical protein TERM 4016 2774913 - 2774887 - T 100 -16.8 -3.74693 | opp_overlap 2774887 2774890 2774895, overlap 2774890 2774895 GGGCATGTTATGAAA TAAGGAAAGTGC GTA GCACTTTCCTTA TTTCATAAACATAGT TERM 4017 2774887 - 2774913 + T 100 -16.8 -3.73953 | opp_overlap 2774887 2774890 2774895, overlap 2774890 2774895 GGGCATGTTATGAAA TAAGGAAAGTGC GTA GCACTTTCCTTA TTTCATAAACATAGT TERM 4018 2774910 - 2774890 - T 100 -14.1 -4.00756 | opp_overlap 2774887 2774890 2774895, overlap 2774887 2774895 CATGTTATGAAATAA GGAAAGTGC GTA GCACTTTCC TTATTTCATAAACAT TERM 4019 2774890 - 2774910 + T 100 -14.1 -4.0031 | opp_overlap 2774890 2774887 2774895, overlap 2774887 2774895 CATGTTATGAAATAA GGAAAGTGC GTA GCACTTTCC TTATTTCATAAACAT TERM 4020 2774905 - 2774895 - T 71 -6.8 -4.16371 | opp_overlap 2774890 2774887 2774895, overlap 2774890 2774887 TATGAAATAAGGAAA GTGC GTA GCAC TTTCCTTATTTCATA TERM 4021 2774895 - 2774905 + T 71 -6.8 -4.16371 | opp_overlap 2774895 2774890 2774887, overlap 2774890 2774887 TATGAAATAAGGAAA GTGC GTA GCAC TTTCCTTATTTCATA CLD_1967 2775180 - 2774911 - | hypothetical protein CLD_1966 2776205 - 2775381 - | HAD family hydrolase CLD_1965 2776318 - 2776794 + | putative lipoprotein TERM 4022 2777629 - 2777609 - g 72 -7.7 -3.695 | overlap 2777607 CTTCAAAAGCAAATA TCCCTTAAA ATT TTTAAAGGA TGAGGAAATAGAAGC CLD_1964 2777205 - 2782070 + | hypothetical protein TERM 4023 2782303 - 2782293 - g 78 -4 -5.45726 | opp_overlap 2782293, overlap 2782301 TATAGTTCAAAAAAA TTCT AGA AGAA GCTTTTTGATAACTA TERM 4024 2783217 - 2783234 + G 71 -7.7 -3.40674 | opp_overlap 2783217, overlap 2783216 TACTATAAAATCAGA GTGGCAC TATA GTGCTAC ATTTTTAGATGGTGC CLD_1963 2782147 - 2783370 + | hypothetical protein TERM 4025 2784361 - 2784351 - g 72 -4 -5.01422 | TTATAGAAAAACAAA TTTC TAC GAAA AATATCTATTAGGAA CLD_1962 2783524 - 2784579 + | hypothetical protein TERM 4026 2784609 - 2784566 - f 100 -7.8 -6.15717 | gap 1, opp_overlap 2784572 2784577 2784580, overlap 2784570 2784572 TAAATATAAAAAAAA TAAATAGCAAATAAGCTTAAA ATT TTTAGGCTTATTTGCT-TATA TCTTATTAATATTTT TERM 4027 2784606 - 2784570 - f 100 -11.1 -5.39407 | opp_overlap 2784572 2784577 2784580, overlap 2784566 2784572 TATAAAAAAAATAAA TAGCAAATAAGCTTAAA ATT TTTAGGCTTATTTGCTT ATATCTTATTAATAT TERM 4028 2784604 - 2784572 - f 100 -13.7 -4.26495 | opp_overlap 2784572 2784577 2784580, overlap 2784570 2784566 TAAAAAAAATAAATA GCAAATAAGCTTAAA ATT TTTAGGCTTATTTGC TTATATCTTATTAAT TERM 4029 2784572 - 2784604 + F 100 -15.9 -3.77437 | opp_overlap 2784570 2784566 2784572, overlap 2784577 2784580 TAAAAAAAATAAATA GCAAATAAGCTTAAA ATT TTTAGGCTTATTTGC TTATATCTTATTAAT TERM 4030 2784577 - 2784599 + F 79 -8.6 -4.07968 | opp_overlap 2784572 2784570 2784566, overlap 2784572 2784580 AAAATAAATAGCAAA TAAGCTTAAA ATT TTTAGGCTTA TTTGCTTATATCTTA TERM 4031 2784718 - 2784742 + F 74 -8.8 -2.9838 | opp_overlap 2784718, overlap 2784716 ATTTTATTTATTATA GTTTACTATA CAATA TATAGTAAAC TCATTAATTTTTAAA TERM 4032 2784742 - 2784718 - f 76 -9.5 -2.80935 | opp_overlap 2784718 2784716 ATTTTATTTATTATA GTTTACTATAC AAT ATATAGTAAAC TCATTAATTTTTAAA CLD_1961 2784771 - 2785610 + | hypothetical protein TERM 4033 2785649 - 2785593 - T 78 -7.5 -4.20883 | opp_overlap 2785608, overlap 2785601 2785606 2785608 2785611 GAAAAACTCCTAAAA TCTATAAACTCAATATAAGGAAAGTGC GAC GCACTTTCCTTATTTTATGCTTCTAAT AAGAAAGCGTGGTAT TERM 4034 2785641 - 2785601 - T 100 -13.5 -4.06179 | opp_overlap 2785608, overlap 2785593 2785606 2785608 2785611 CCTAAAATCTATAAA CTCAATATAAGGAAAGTGC GAC GCACTTTCCTTATTTTATG CTTCTAATAAGAAAG TERM 4035 2785636 - 2785606 - T 100 -14.2 -3.34113 | opp_overlap 2785608, overlap 2785601 2785593 2785608 2785611 AATCTATAAACTCAA TATAAGGAAAGTGC GAC GCACTTTCCTTATT TTATGCTTCTAATAA TERM 4036 2785634 - 2785608 - T 100 -16.8 -3.23047 | opp_overlap 2785608, overlap 2785606 2785601 2785593 2785611 TCTATAAACTCAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTTATGCTTCTAAT TERM 4037 2785608 - 2785634 + T 100 -16.8 -4.59069 | opp_overlap 2785606 2785601 2785593 2785608 2785611 TCTATAAACTCAATA TAAGGAAAGTGC GAC GCACTTTCCTTA TTTTATGCTTCTAAT TERM 4038 2785631 - 2785611 - T 100 -14.1 -3.74475 | opp_overlap 2785608, overlap 2785608 2785606 2785601 2785593 ATAAACTCAATATAA GGAAAGTGC GAC GCACTTTCC TTATTTTATGCTTCT CLD_1960 2787172 - 2785637 - | M20/M25/M40 family peptidase CLD_1959 2788098 - 2787163 - | putative magnesium and cobalt transport protein CorA TERM 4039 2788271 - 2788230 - R 87 -6.3 -5.69023 | gap 1, opp_overlap 2788229 2788230, overlap 2788222 AAAACATTAAAAAAA CTAACTA-AATTTTTTTATA TTT CATTAAAAAATTATAGTTAG CTTTATTGTAAAAAT TERM 4040 2788467 - 2788428 - R 100 -14.6 -2.90615 | gap 1, opp_overlap 2788431 2788432 2788464, overlap 2788431 2788432 2788434 2788450 ATTTCTCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTGTTA ATAAGCTTTAGTGGG TERM 4041 2788431 - 2788464 + r 93 -11.9 -3.20747 | gap 1, opp_overlap 2788428 2788431 2788432 2788434 2788450, overlap 2788432 TCTCCTAAAGGATAA C-GACTTCTAAGGAGT AAA ACTCCTAAGAAGTCTG TTAATAAGCTTTAGT TERM 4042 2788463 - 2788431 - R 95 -12.1 -3.60151 | opp_overlap 2788431 2788432, overlap 2788428 2788432 2788434 2788450 TCTCCTAAAGGATAA CGACTTCTAAGGAGT AAA ACTCCTAAGAAGTCT GTTAATAAGCTTTAG TERM 4043 2788462 - 2788432 - R 100 -15.6 -2.75769 | opp_overlap 2788432 2788431, overlap 2788431 2788428 2788434 2788450 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTTA TERM 4044 2788432 - 2788462 + r 100 -15.6 -3.16288 | opp_overlap 2788431 2788428 2788432 2788434 2788450, overlap 2788431 CTCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAAGTC TGTTAATAAGCTTTA TERM 4045 2788460 - 2788434 - R 89 -12.4 -2.92144 | opp_overlap 2788432 2788431, overlap 2788432 2788431 2788428 2788450 CCTAAAGGATAACGA CTTCTAAGGAGT AAA ACTCCTAAGAAG TCTGTTAATAAGCTT TERM 4046 2788503 - 2788472 - R 100 -16 -3.62522 | opp_overlap 2788464 GAAGTCTGTTAATAA GCTTTAGTGGGAGT AAAA ACTCCCTCTAAAGC CAAGAACTCTGTTTA CLD_1958 2789079 - 2788525 - | 5-formyltetrahydrofolate cyclo-ligase family protein hprK 2789995 - 2789072 - | HPr(Ser) kinase/phosphatase CLD_1956 2790215 - 2790027 - | hypothetical protein TERM 4047 2790338 - 2790388 + r 89 -9.5 -4.34789 | gap 1, opp_overlap 2790342 2790345 2790348, overlap 2790335 2790339 2790340 2790342 AAGCCTTTAAAGTAG TA-TAGAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTCTACTA TTCTTTTGTGACTTG TERM 4048 2790339 - 2790386 + r 90 -10.2 -3.76183 | opp_overlap 2790342 2790345 2790348, overlap 2790338 2790335 2790340 2790342 AGCCTTTAAAGTAGT ATAGAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTCTAC TATTCTTTTGTGACT TERM 4049 2790340 - 2790385 + r 100 -13.7 -2.84625 | opp_overlap 2790342 2790345 2790348, overlap 2790339 2790338 2790335 2790342 GCCTTTAAAGTAGTA TAGAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTCTA CTATTCTTTTGTGAC TERM 4050 2790342 - 2790383 + r 90 -11.9 -2.95962 | opp_overlap 2790342 2790345 2790348, overlap 2790340 2790339 2790338 2790335 CTTTAAAGTAGTATA GAATAAGAGACATATTC CCTTTAAA GACTATGTCTCTTATTC TACTATTCTTTTGTG TERM 4051 2790383 - 2790342 - R 93 -13.3 -2.8934 | opp_overlap 2790342 2790340 2790339 2790338 2790335, overlap 2790345 2790348 CTTTAAAGTAGTATA GAATAAGAGACATATTCCC TTTA AAGACTATGTCTCTTATTC TACTATTCTTTTGTG TERM 4052 2790380 - 2790345 - R 83 -9.2 -3.58802 | opp_overlap 2790342 2790340 2790339 2790338 2790335, overlap 2790342 2790348 TAAAGTAGTATAGAA TAAGAGACATATTCCC TTTA AAGACTATGTCTCTTA TTCTACTATTCTTTT CLD_1955 2791123 - 2790386 - | DedA family protein CLD_1954 2791808 - 2791089 - | DedA family protein TERM 4053 2791198 - 2791170 - GR 75 -9.1 -2.98381 | overlap 2791167 2791172 2791195 TAATTTATTAAAGGA TAGCTTCTTTT TCATAAT AAAAGAAGCTA AACATAGCAAAACTA TERM 4054 2791770 - 2791788 + gr 86 -3.2 -5.91981 | opp_overlap 2791772, overlap 2791772 TAATAAAATAACCAA AATTATAG AAA CTATAATA TTTTTTTTAGATTTT TERM 4055 2791786 - 2791772 - GR 73 -5.8 -4.68479 | opp_overlap 2791770 2791772 ATAAAATAACCAAAA TTATAG AAA CTATAA TATTTTTTTTAGATT TERM 4056 2791772 - 2791786 + gr 73 -5.8 -4.56715 | opp_overlap 2791772, overlap 2791770 ATAAAATAACCAAAA TTATAG AAA CTATAA TATTTTTTTTAGATT CLD_1953 2793062 - 2791917 - | hypothetical protein CLD_1952 2794060 - 2793062 - | hypothetical protein CLD_1951 2794739 - 2794038 - | hypothetical protein CLD_1950 2795413 - 2794739 - | glycosyl transferase, group 2 family protein TERM 4057 2795116 - 2795091 - G 81 -6.3 -5.04325 | TTTAAATCACAAAAA TATATAGGAAA TCCA CCTCCTATATA TCCATCTTTTATAGC TERM 4058 2795729 - 2795767 + r 89 -9.9 -3.59202 | opp_overlap 2795724 2795729 TTCTATAAATTAAAA GAGTATGTATTAAGC CATAATGGA GTTTAATACATACTC TTATATATAAGGATC TERM 4059 2795767 - 2795729 - R 85 -8.4 -4.61873 | opp_overlap 2795729, overlap 2795724 TTCTATAAATTAAAA GAGTATGTATTAAGCC ATAATGG AGTTTAATACATACTC TTATATATAAGGATC glpX 2796789 - 2795815 - | fructose-1,6-bisphosphatase, class II CLD_1948 2797273 - 2797449 + | hypothetical protein TERM 4060 2797442 - 2797429 - T 76 -2.5 -5.83211 | overlap 2797437 TATGAAAATAAAAAA TATAA AAAT TTATA CAAATAAAACAACCA TERM 4061 2797475 - 2797452 - T 91 -8.2 -5.05113 | opp_overlap 2797455, overlap 2797455 TTTATACAAATAAAA CAACCACAGA TTTA TCTGTGGTTT CATTTTCAATAGACA TERM 4062 2797455 - 2797472 + T 95 -9.9 -4.21922 | opp_overlap 2797452 2797455 ATACAAATAAAACAA CCACAGA TTTA TCTGTGG TTTCATTTTCAATAG TERM 4063 2797472 - 2797455 - T 100 -9.9 -4.60302 | opp_overlap 2797455, overlap 2797452 ATACAAATAAAACAA CCACAGA TTTA TCTGTGG TTTCATTTTCAATAG CLD_1947 2797879 - 2797481 - | hypothetical protein TERM 4064 2798176 - 2798211 + r 95 -8.6 -5.22039 | gap 1, opp_overlap 2798176 TTTATAAAGAAAAAA CTACGAACTTAGAATAT TAT AT-TTCTAAGTTCATAG TTTTTTAAATTTGAA TERM 4065 2798211 - 2798176 - R 100 -10.8 -5.72622 | gap 1, opp_overlap 2798176 TTTATAAAGAAAAAA CTACGAACTTAGAA-TA TTA TATTTCTAAGTTCATAG TTTTTTAAATTTGAA CLD_1946 2799503 - 2798334 - | metallo-beta-lactamase family protein/flavodoxin TERM 4066 2798479 - 2798465 - G 74 -8.6 -3.30243 | ATCTATCTGTCATAA GAGAAG GGC CTTCTC CACTCCAACCATAAG TERM 4067 2799654 - 2799706 + r 100 -16.7 -2.91383 | opp_overlap 2799696 TATTTTATCCGATGA C-TACCCGCTCTTTACTCCCATCTT CTTCA AAG-TGGGAGTAAAGAGCGGCTACG TCTCTGGATAACGAT TERM 4068 2799769 - 2799739 - R 79 -9.8 -2.67747 | opp_overlap 2799742, overlap 2799738 2799741 TCCCTAGAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTTA TERM 4069 2799742 - 2799766 + r 90 -10.1 -3.71552 | opp_overlap 2799741 2799739 2799738 CTAGAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 4070 2799810 - 2799779 - R 89 -10.2 -3.62522 | opp_overlap 2799771, overlap 2799780 GAATTCTGTTAATAA GCTTTAGAGGGAGT TTTT ACTCCCACTAAAGT CAAGAACTCTGTTTA TERM 4071 2799809 - 2799780 - R 100 -13.7 -2.77192 | opp_overlap 2799771, overlap 2799779 AATTCTGTTAATAAG CTTTAGAGGGAGT TTTT ACTCCCACTAAAG TCAAGAACTCTGTTT CLD_1945 2800504 - 2799998 - | hypothetical protein TERM 4072 2800070 - 2800049 - G 73 -8.1 -3.494 | opp_overlap 2800049 2800048 TAATGTTTTAGACAA TGCTTTTAC TAAA GCAAAAGCA ATTATACCATCTACT TERM 4073 2800789 - 2800771 - R 84 -8.9 -4.23529 | overlap 2800775 ATATTAATATATAAA CATACCC CATAT GGGTATG GAGGTGGATATATTA TERM 4074 2801173 - 2801223 + r 100 -10.2 -4.50259 | opp_overlap 2801166 2801174 2801180, overlap 2801174 2801180 2801219 TTAATAAATTAATAA TTAAAAAGCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGCTTTTAAC TTTTAATATATTTTT TERM 4075 2801222 - 2801174 - R 100 -13.7 -2.96924 | opp_overlap 2801173 2801174 2801180 2801219, overlap 2801166 2801180 TAATAAATTAATAAT TAAAAAGCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGCTTTTAA CTTTTAATATATTTT TERM 4076 2801174 - 2801222 + r 100 -13.7 -3.27715 | opp_overlap 2801166 2801174 2801180, overlap 2801173 2801180 2801219 TAATAAATTAATAAT TAAAAAGCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGCTTTTAA CTTTTAATATATTTT TERM 4077 2801216 - 2801180 - R 100 -12.7 -5.00339 | opp_overlap 2801174 2801173 2801180, overlap 2801174 ATTAATAATTAAAAA GCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGC TTTTAACTTTTAATA TERM 4078 2801180 - 2801216 + r 100 -12.7 -4.44277 | opp_overlap 2801180 2801174, overlap 2801174 2801173 ATTAATAATTAAAAA GCTATAAATTTGAAA TTTAATC TTTCAAATTTATAGC TTTTAACTTTTAATA TERM 4079 2801387 - 2801399 + r 70 -4.9 -4.90778 | TTAAAACGACTATAT GAAAA TTA TTTTC TTTTATTTGAATAAC TERM 4080 2801532 - 2801505 - R 71 -5.8 -4.55849 | opp_overlap 2801505 2801507 2801509 TAAAATTTAAATAAA TATAGATTATTT TCAT AAATAAACTATA TGTAATCTTAAAAAT CLD_1944 2802419 - 2801556 - | IUNH family nucleoside hydrolase TERM 4081 2801774 - 2801788 + g 79 -5.8 -5.09225 | opp_overlap 2801773 CCCAATTGCAAAAGG CTTTTA TAT TAAAAG TTTTTTCCATAGAAT def 2802973 - 2802437 - | peptide deformylase TERM 4082 2802936 - 2802914 - G 71 -8.6 -2.87622 | overlap 2802913 TATTGCCATAATAAC TCTTAAAGCT AAA AGCTTTAAAA CTCCCTCCTTTTTAT TERM 4083 2803202 - 2803150 - R 100 -14.5 -2.70115 | opp_overlap 2803154 2803155 2803168, overlap 2803168 TAAAGCAAAACATAC TTACTTTGTATAAAAAAAGCAGCGA TTT TCGCTGCTTTTTTTATACCATATTA CTTTGCTTTTCTTCC TERM 4084 2803154 - 2803199 + r 100 -15.9 -3.69699 | gap 1, opp_overlap 2803150 2803168, overlap 2803155 2803168 GCAAAACATACTTAC T-TTGTATAAAAAAAGCAGCGA TTT TCGCTGCTTTTTTTATACCATA TTACTTTGCTTTTCT TERM 4085 2803155 - 2803197 + r 100 -21 -3.40546 | opp_overlap 2803150 2803168, overlap 2803154 2803168 CAAAACATACTTACT TTGTATAAAAAAAGCAGCGA TTT TCGCTGCTTTTTTTATACCA TATTACTTTGCTTTT TERM 4086 2803168 - 2803184 + r 100 -12.3 -5.626 | opp_overlap 2803150 2803168, overlap 2803155 2803154 CTTTGTATAAAAAAA GCAGCGA TTT TCGCTGC TTTTTTTATACCATA TERM 4087 2803184 - 2803168 - R 100 -12.3 -5.60993 | opp_overlap 2803168 2803155 2803154, overlap 2803150 CTTTGTATAAAAAAA GCAGCGA TTT TCGCTGC TTTTTTTATACCATA CLD_1942 2803840 - 2803190 - | V-type ATPase, D subunit TERM 4088 2803660 - 2803650 - G 72 -4 -5.1675 | opp_overlap 2803650 2803653 CTAGCCATTAAAAAA TCTT TAA AAGA TCCTTCTAATTCCTT CLD_1941 2805254 - 2803869 - | V-type ATPase, B subunit TERM 4089 2804236 - 2804246 + g 89 -6.8 -5.42131 | AATACATCTATCGGA GGCA TTA TGCC TTTTTTGTATAATTC CLD_1940 2807025 - 2805247 - | V-type ATPase, A subunit TERM 4090 2806536 - 2806550 + g 71 -7.2 -3.75517 | overlap 2806548 TGAAGTCTCCTTCTT CTATAG TCT CTATAG TTCCTTTTATACCAT TERM 4091 2806816 - 2806834 + g 76 -9.6 -2.83715 | opp_overlap 2806811 AACACTTAAAGGTTC CCCAGTAG TTA TTACTGGG TCTCCTGGTGCTAAA CLD_1939 2807347 - 2807039 - | V-type ATPase, G subunit CLD_1938 2808341 - 2807340 - | V-type ATPase, C subunit TERM 4092 2808032 - 2808047 + g 78 -6.2 -4.75289 | opp_overlap 2808031 CTTTCTCTAATATAT GTTCTT TTAT AAGAAC TTTTATATTATGATA CLD_1937 2808955 - 2808356 - | V-type ATPase, E subunit CLD_1936 2809470 - 2808994 - | V-type ATPase, K subunit CLD_1935 2811429 - 2809483 - | V-type ATPase, I subunit TERM 4093 2811286 - 2811298 + g 70 -6.3 -4.19258 | opp_overlap 2811283, overlap 2811283 GTCTGATACCAACTC TGACT GAG AGTCA TTTTGCATAAACTCT CLD_1934 2811757 - 2811431 - | putative V-type ATPase, G subunit TERM 4094 2811495 - 2811526 + g 78 -6.9 -4.62904 | gap 1, opp_overlap 2811495 GCCTTTTCAAATTTA TCCTTAGAAA-TAT TTTTT ATACTTTCTAAGGA TTTTTCCCCCTCTTT TERM 4095 2812049 - 2812063 + r 70 -4.4 -4.97824 | overlap 2812058 TTATAGTACCCTTTT TTTAAA TTT TTTAAA TTTTCTTTAAATTTT CLD_1933 2813765 - 2812080 - | putative B12-binding Fe-S oxidoreductase TERM 4096 2813692 - 2813717 + gr 75 -9.2 -2.57026 | overlap 2813691 2813695 TTTAAATCCTCTGTA TTAGCTCTTA AATATC TAAGAGCTAA ATTGCTATGAATATA CLD_1932 2814348 - 2813740 - | hypothetical protein TERM 4097 2813849 - 2813859 + gr 70 -4 -4.87803 | overlap 2813854 TACACTCCATCGGAA GATT TTA AATC TTTTATTTCAAAATA TERM 4098 2813988 - 2814002 + gr 93 -7.2 -5.65177 | TTTTTATTTTTCCGT TAAAGG TTT CCTTTA TTTTTTTATCAATGT TERM 4099 2814497 - 2814479 - R 100 -6 -6.77747 | opp_overlap 2814479, overlap 2814481 CAATAAAAAAAAAAA TCCTCCTC TTA AAGGAGAA TCTTATTTTTTACCT CLD_1931 2815206 - 2814487 - | putative phospholipase C CLD_1930 2816427 - 2815228 - | hypothetical protein CLD_1929 2819012 - 2816466 - | putative calcium-translocating P-type ATPase, PMCA-type TERM 4100 2818404 - 2818417 + g 72 -5.3 -4.72486 | CACCTGTATATCATC TAGCA TTTC TGCTA TTTTTCCCATTTCTG TERM 4101 2819252 - 2819266 + H 70 -4.3 -4.91511 | TAAAATCTAGAAATT TGAAC TTAAT GTTCA TTTTTATGATAAAAT CLD_1928 2819331 - 2820974 + | putative manganese-dependent inorganic pyrophosphatase TERM 4102 2821077 - 2821124 + T 84 -9.7 -3.76125 | opp_overlap 2821072 2821077 2821081, overlap 2821081 ATTAATCTAATAAAA TAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTA TTTAAATTAAAATAC TERM 4103 2821124 - 2821077 - T 83 -7.5 -4.72631 | opp_overlap 2821077 2821081, overlap 2821072 2821081 ATTAATCTAATAAAA TAAATAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTATTTA TTTAAATTAAAATAC TERM 4104 2821081 - 2821120 + T 72 -6.1 -4.50159 | opp_overlap 2821077 2821072 2821081, overlap 2821077 ATCTAATAAAATAAA TAGCTATAAAAATAA TTAAAATGCT TTATTTTTGTAGCTA TTTATTTAAATTAAA TERM 4105 2821131 - 2821150 + T 77 -5.2 -5.43866 | opp_overlap 2821131 AGCTATTTATTTAAA TTAAAATA CCTT TATTTTAA TTTTTTTACAGATTA CLD_1927 2821775 - 2821194 - | hypothetical protein TERM 4106 2822023 - 2822013 - R 86 -4 -6.08342 | TAAGAAATAAAAAAA CTAT GAA ATAG AAAAATTAAATCTAT CLD_1926 2822952 - 2822161 - | flagellar basal body rod protein TERM 4107 2822224 - 2822246 + g 77 -8.6 -3.67102 | opp_overlap 2822213 2822227, overlap 2822213 2822218 2822227 AATACCTCTTGAACT TAATTCAAAG GCT CTTTGAGTTA TTATCATTTCTGTCA CLD_1925 2823773 - 2823006 - | flagellar basal body rod protein TERM 4108 2823132 - 2823153 + g 71 -4.5 -4.7219 | overlap 2823134 TTCATTAGTTACATT TACATTAGA TTTT TCTAATGAA TTTTGTCTTACTATA CLD_1924 2823970 - 2823839 - | hypothetical protein CLD_1923 2824671 - 2824033 - | hypothetical protein TERM 4109 2824306 - 2824321 + g 75 -4.8 -5.03945 | CATTATTTTTTTATT TATTTC CTTG GAAATA TTTTTGTCGTTCTTG fliA 2825428 - 2824700 - | RNA polymerase sigma factor for flagellar operon FliA TERM 4110 2825155 - 2825177 + g 79 -7.7 -4.35604 | TATTTAATTTGTCCA TAGCCCCTT TGGAT ATGGGGCTA TTTCTTCTCAATTCG CLD_1921 2826101 - 2825442 - | hypothetical protein flhG 2826976 - 2826116 - | flagellar biosynthesis protein FlhG flhF 2828196 - 2826970 - | flagellar biosynthesis protein FlhF TERM 4111 2828087 - 2828071 - G 88 -8.7 -4.37886 | opp_overlap 2828071 2828070 2828073 GGATTTTTTAGAAAA GAGGCCT AAA AAGCCTC CCTTTCTTATTTTTC flhA 2830259 - 2828193 - | flagellar biosynthesis protein FlhA TERM 4112 2828851 - 2828825 - G 71 -8.8 -2.83273 | opp_overlap 2828830, overlap 2828828 TTAAATGAGTAACCA TAACTGTAGTAG GAT CTACCACTGTTA AGCCTTTAAGTTCTG TERM 4113 2829332 - 2829322 - G 72 -6.8 -4.0865 | opp_overlap 2829321, overlap 2829317 TTGAATAAAAGATAA GCAG CCA CTGC ATTAGCTATAGCTAA CLD_1917 2832116 - 2830287 - | flagellar biosynthetic protein FliR/FlhB TERM 4114 2830391 - 2830404 + g 76 -6.7 -4.44211 | opp_overlap 2830388 2830391, overlap 2830388 CCTTTTCATATATTA GCCTT GCTA AAGGC TTGTTTTCTATTACA TERM 4115 2831933 - 2831958 + g 74 -9.3 -2.87211 | opp_overlap 2831935 2831939, overlap 2831935 2831939 TTAATGCAGTGGAAT TATTAATAGTA TTTA TACTATTAATA TCTATAGAACCAACT fliQ 2832419 - 2832150 - | flagellar biosynthesis protein FliQ fliP 2833207 - 2832431 - | flagellar biosynthetic protein FliP CLD_1914 2833598 - 2833191 - | flagellar biosynthesis domain-containing protein fliL 2834192 - 2833671 - | flagellar basal body-associated protein FliL TERM 4116 2833971 - 2833944 - G 77 -5.8 -4.95957 | TAAATTAACTAAAAA TTCATCTAAA GAGTAAGT TTTAGATGAA ACTACTACCTGTTGT motB 2834932 - 2834189 - | chemotaxis motB protein motA 2835737 - 2834925 - | chemotaxis MotA protein CLD_1910 2835943 - 2835734 - | flagellar protein FlbD TERM 4117 2835760 - 2835782 + g 70 -5.6 -4.24654 | opp_overlap 2835765, overlap 2835765 ACTCCCCCTGTATGC CTAAAGTGAT TAT GTCACTTTTG TATTTTTTAACTTTT TERM 4118 2835765 - 2835777 + g 72 -4.1 -5.06052 | opp_overlap 2835765, overlap 2835760 CCCTGTATGCCTAAA GTGAT TAT GTCAC TTTTGTATTTTTTAA TERM 4119 2836096 - 2836137 + r 100 -16.4 -5.28414 | opp_overlap 2836099 2836104 AAAATTTTTTATATT TAATGTAATAGTTAATAG ATAAAA CTATTAACTATTACATTA TTTTTATGTTTATTA TERM 4120 2836134 - 2836099 - R 100 -13.7 -3.1247 | opp_overlap 2836096, overlap 2836104 ATTTTTTATATTTAA TGTAATAGTTAATAG ATAAAA CTATTAACTATTACA TTATTTTTATGTTTA flgE 2837211 - 2836177 - | flagellar hook protein flgE CLD_1908 2837712 - 2837293 - | flagellar operon protein TERM 4121 2837444 - 2837457 + g 70 -5.3 -4.61852 | CTTCCCTTCTTATCG GCTAT ATTT ATAGC TTTATTTATACTATT flgD 2838548 - 2837727 - | flagellar hook capping protein fliK 2839966 - 2838578 - | flagellar hook-length control protein TERM 4122 2839370 - 2839382 + g 75 -4.9 -5.03994 | AGTTTCTAACAAATC TTCAT CTA ATGAA TTTTTATCTGTAAGA CLD_1905 2840409 - 2839972 - | flagellar protein FliJ fliI 2841829 - 2840513 - | flagellar protein export ATPase FliI fliH 2842645 - 2841869 - | flagellar assembly protein FliH TERM 4123 2842248 - 2842267 + g 83 -8 -4.60924 | TATTGTGCTTCAGTA TCTAACAA TAAT TTGTTAGA TTTTTGCACCATTTC fliG 2843642 - 2842629 - | flagellar motor switch protein fliG TERM 4124 2843211 - 2843189 - G 70 -8.4 -3.17714 | opp_overlap 2843189 2843182 GCAAATCTTCAGGAA GGGAGGACAA TAT TTGCCCTGCC TTATCTGATTGCATA fliF 2845229 - 2843649 - | flagellar M-ring protein fliF fliE 2845559 - 2845245 - | flagellar hook-basal body complex protein FliE flgC 2846005 - 2845571 - | flagellar basal-body rod protein FlgC TERM 4125 2845785 - 2845802 + g 82 -4.2 -5.54192 | TCCACTATACCTGTA GCTTTA ACTCCA TAAAGC TTTTTTTCAGTTGCT flgB 2846504 - 2846103 - | flagellar basal-body rod protein FlgB TERM 4126 2847069 - 2847040 - R 82 -8.1 -4.46835 | opp_overlap 2847036 2847040 2847039, overlap 2847036 ATAAGCTCAAATAAA GCATCTTTAAT TTATCTTT ATTAAAGATGC AATTTTGTTATTTAG CLD_1897 2847931 - 2847077 - | flagellin CLD_1896 2848443 - 2848075 - | hypothetical protein TERM 4127 2848556 - 2848544 - R 72 -7.7 -3.5394 | opp_overlap 2848533, overlap 2848533 2848532 2848528 2848527 AAAGTCCTTGCTAAA GCAAG AAT CTTGC TCATACAAAACTTAT argH 2850306 - 2848984 - | argininosuccinate lyase TERM 4128 2849212 - 2849226 + g 72 -4.2 -5.03747 | overlap 2849201 ATCCGCTGCTTCTGT GGCATT TAA AAAGCC TTTTTTCACAGATTT argG 2851521 - 2850328 - | argininosuccinate synthase TERM 4129 2851734 - 2851708 - R 81 -8.8 -3.87627 | overlap 2851706 2851709 TTTTCACATAAAACA GGCCATTTATCA CAA CGATAAATGGCA AATATAGTAATATTA TERM 4130 2851733 - 2851709 - R 89 -12.3 -2.92094 | overlap 2851708 2851706 TTTCACATAAAACAG GCCATTTATCA CAA CGATAAATGGC AAATATAGTAATATT TERM 4131 2851813 - 2851781 - R 100 -12.2 -4.44915 | opp_overlap 2851781 2851784 TAATTATGCACAAAA TAAGCCCTGTTACA TAAAT TGTAACAGAGCCTA TTTACCAAACTATTC TERM 4132 2851781 - 2851813 + r 72 -7.8 -3.55548 | opp_overlap 2851781, overlap 2851784 TAATTATGCACAAAA TAAGCCCTGTTACA TAAAT TGTAACAGAGCCTA TTTACCAAACTATTC TERM 4133 2851784 - 2851810 + r 75 -9.5 -2.60813 | opp_overlap 2851781, overlap 2851781 TTATGCACAAAATAA GCCCTGTTACA TAAAT TGTAACAGAGC CTATTTACCAAACTA CLD_1893 2852153 - 2851815 - | hypothetical protein TERM 4134 2852061 - 2852080 + g 76 -3.6 -5.41941 | overlap 2852063 TACTCTTTTCTTTAA TTCTTTGT CAGT ACAAAGTA TTTTTATTTCATTTA TERM 4135 2852063 - 2852078 + g 72 -6.2 -4.30791 | overlap 2852061 CTCTTTTCTTTAATT CTTTGT CAGT ACAAAG TATTTTTATTTCATT CLD_1892 2852520 - 2852176 - | hypothetical protein cls 2854130 - 2852700 - | cardiolipin synthetase TERM 4136 2854499 - 2854488 - g 71 -5.8 -4.4261 | opp_overlap 2854488 TGCGTAACATTAAAA CTGC CTTA GCAG TTACTCTTGCTATAT TERM 4137 2854552 - 2854567 + G 73 -9 -3.08294 | overlap 2854551 AGATTCTCCTTTTTA TGCAGC CATT GCTGCA GTTATTTCTATGCAA TERM 4138 2854992 - 2854971 - g 85 -6 -5.49569 | TACCAACAGAAAAAA TCTACTTT CATCAT AAAGTAGA TATAAAAAAGCTTAA TERM 4139 2855198 - 2855182 - g 71 -2.3 -5.38549 | opp_overlap 2855182 2855190, overlap 2855185 2855190 GTTAAATAATAAAAA TTATGAA AGA TTCAAAA ATTTGTATCATTTAC CLD_1890 2854457 - 2855347 + | hypothetical protein TERM 4140 2855408 - 2855364 - T 86 -9 -4.45544 | opp_overlap 2855364 2855371, overlap 2855371 GTTTAGTAATTAAAA TAAAAAAGTACTTTTAATCA ATAAA TAACTAAAAGTACTTTTATA TATATATCTTCTCCC TERM 4141 2855401 - 2855371 - T 95 -7.1 -5.85244 | opp_overlap 2855364 2855371, overlap 2855364 AATTAAAATAAAAAA GTACTTTTAATCA ATAAA TAACTAAAAGTAC TTTTATATATATATC CLD_1889 2855663 - 2855478 - | hypothetical protein TERM 4142 2855939 - 2855914 - R 80 -6.9 -5.00027 | AGTAAAAATATAAAA GAGAACCGCCA TTTT TAACGATTCTC TTTATATTTATTCCT CLD_1888 2856396 - 2855947 - | VanZ family protein CLD_1887 2858077 - 2856647 - | polysaccharide biosynthesis protein CLD_1886 2859034 - 2858117 - | NAD-dependent epimerase/dehydratase family protein CLD_1885 2860130 - 2859063 - | neuB family protein CLD_1884 2861823 - 2860162 - | cytidyltransferase-like protein TERM 4143 2860375 - 2860361 - G 74 -8.6 -3.30797 | overlap 2860359 CCTAAATTTATAACA CCATTC CCT GAATGG CCAAATATATGAGTT TERM 4144 2860548 - 2860564 + g 87 -2.3 -6.15717 | TATTTTTAAAATTCT TATACTT TTC ATGTATA TTTTTTTTATCTTTG TERM 4145 2861678 - 2861694 + g 74 -2.3 -5.65513 | opp_overlap 2861685 2861688, overlap 2861681 2861683 2861688 GTAGTTATTAATATG TAATCTA TAA TAGATGA TTTTTTTAATTCATC CLD_1883 2863007 - 2861838 - | hypothetical protein CLD_1882 2863994 - 2863041 - | exopolysaccharide biosynthesis protein CLD_1881 2864791 - 2864021 - | exopolysaccharide biosynthesis protein glf 2865891 - 2864791 - | UDP-galactopyranose mutase CLD_1879 2866673 - 2865996 - | putative undecaprenyl-phosphate galactosephosphotransferase TERM 4146 2866846 - 2866881 + r 75 -4 -5.47846 | opp_overlap 2866856, overlap 2866856 AACCCTTATTTTTTT GTTTTTTAAAGTGGTG ATAA CACCACTTTCTTAAGC TTTTATTTTTTGCTT TERM 4147 2866871 - 2866856 - R 79 -9 -3.53012 | opp_overlap 2866846 2866856 TTTTTGTTTTTTAAA GTGGTG ATAA CACCAC TTTCTTAAGCTTTTA TERM 4148 2866856 - 2866871 + r 84 -9 -4.24711 | opp_overlap 2866856, overlap 2866846 TTTTTGTTTTTTAAA GTGGTG ATAA CACCAC TTTCTTAAGCTTTTA CLD_1878 2867594 - 2866884 - | capsular exopolysaccharide family protein TERM 4149 2867488 - 2867507 + g 74 -8 -3.73512 | AAAATTACACTTATT TTTTCATC AAAG GATGAAAA TTGTATATTAGTTCT CLD_1877 2868386 - 2867613 - | exopolysaccharide biosynthesis protein CLD_1876 2869079 - 2868402 - | capsular polysaccharide biosynthsis protein CLD_1875 2870076 - 2869114 - | cell envelope-related function transcriptional attenuator TERM 4150 2869850 - 2869860 + g 95 -6.8 -5.9218 | ACAGCATCTGATCTT GAGG GTT CCTC TTTTTTTCTTCTATC TERM 4151 2869903 - 2869888 - G 72 -2.6 -5.38497 | ATCTAAACCAAAAAA TGCTAT ATTT ATAACA TCATCTCCATATGAC TERM 4152 2870507 - 2870467 - R 100 -8.6 -5.80817 | gap 1, opp_overlap 2870467 TTTAATATAAAAAAA TTCTAAGCTTTTTTGAAGT AAAA ACCTCTA-AAAGCTTAGAA TTTTTTTATTAGACT TERM 4153 2870467 - 2870507 + r 90 -6.4 -5.80364 | gap 1, opp_overlap 2870467 TTTAATATAAAAAAA TTCTAAGCTTTTTTGAAGT AAAA ACCTCTAAAA-GCTTAGAA TTTTTTTATTAGACT CLD_1874 2870701 - 2870525 - | hypothetical protein CLD_1873 2871003 - 2870830 - | hypothetical protein CLD_1872 2871292 - 2871125 - | hypothetical protein TERM 4154 2871260 - 2871277 + g 77 -7.1 -4.21465 | CTGTCTTAATTGACT CATTTGT TTAA ACAAATG TTCTTTAGTTTTCAA TERM 4155 2871623 - 2871587 - R 73 -2.5 -5.64421 | gap 1, overlap 2871591 ATTTCAAATAAAAAA GCAATGAAATATAAGA TTATCC TCTTA-ATTTCACAGC TTGTATCTATATTAT CLD_1871 2872624 - 2871776 - | methyl-accepting chemotaxis protein TERM 4156 2872040 - 2872058 + g 73 -8.9 -3.10715 | overlap 2872033 AGATTCCCCTGCTCT TGCAGCT TCTAT AGCTGCA TTAAGTCCTAATAAA TERM 4157 2872663 - 2872678 + r 83 -7.6 -4.70117 | TCCCTTTATTTCTTA TGGCTT ATAA AAGCCA TTTATTTATTACATT CLD_1870 2873488 - 2872667 - | flagellin TERM 4158 2873214 - 2873232 + g 85 -8.2 -4.63107 | opp_overlap 2873213 2873214, overlap 2873215 GATTGCACTGATAAT TCCTTCAT TCT ATGAAGGG TTTTAGTTATTTCAT TERM 4159 2873215 - 2873231 + g 78 -9.5 -3.36237 | opp_overlap 2873214 2873213, overlap 2873214 ATTGCACTGATAATT CCTTCAT TCT ATGAAGG GTTTTAGTTATTTCA TERM 4160 2873584 - 2873617 + r 100 -8.4 -5.28315 | opp_overlap 2873589, overlap 2873589 ACTTAATCCAAATCT AAAAAGGATTTTTG TAAAAT CAAAAATCCTTTTC TTTTTTAGCTTTTAT TERM 4161 2873589 - 2873612 + r 100 -8.3 -5.43553 | opp_overlap 2873589, overlap 2873584 ATCCAAATCTAAAAA GGATTTTTG TAAAAT CAAAAATCC TTTTCTTTTTTAGCT TERM 4162 2873612 - 2873589 - R 88 -8.3 -4.81851 | opp_overlap 2873584 2873589 ATCCAAATCTAAAAA GGATTTTTG TAAAAT CAAAAATCC TTTTCTTTTTTAGCT CLD_1869 2874100 - 2873603 - | hypothetical protein TERM 4163 2874077 - 2874091 + g 81 -5.8 -5.23316 | AATTAAAGATATCTT TTTTCT TAC AGAAAA TTTTTTCATATAATG CLD_1868 2875347 - 2874319 - | hypothetical protein TERM 4164 2874463 - 2874475 + g 76 -6.3 -4.63044 | TAAAGGTACTCCTCC TCCAA ATC TTGGA TTTATTTCTATGAAT CLD_1867 2875546 - 2875424 - | hypothetical protein CLD_1866 2876809 - 2875559 - | hypothetical protein CLD_1865 2877156 - 2876836 - | hypothetical protein TERM 4165 2877345 - 2877309 - R 100 -11.1 -4.25104 | opp_overlap 2877304 2877301 2877312 2877319, overlap 2877312 TTTCTTCTATGAAAA TAAGCATCAATAGCTAT TTG AAAGCTATTAATGCTCA TGTCCCTATTATTTT TERM 4166 2877342 - 2877312 - R 95 -10.6 -4.25256 | opp_overlap 2877304 2877301 2877312 2877319, overlap 2877309 CTTCTATGAAAATAA GCATCAATAGCTAT TTG AAAGCTATTAATGC TCATGTCCCTATTAT rfbC 2877976 - 2877407 - | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 4167 2877634 - 2877615 - G 81 -3.5 -5.50313 | opp_overlap 2877615 GATAAAACTAAAAAA CCATGAG CAAAAC CTCCTGG TATATAAAACTGCTT rfbB 2879043 - 2877988 - | dTDP-glucose 4,6-dehydratase TERM 4168 2878109 - 2878131 + g 79 -7.8 -4.22369 | overlap 2878111 CCATCTTCAAATTTG GTTTTAGGTT CCC AACCTAAATC TTCTTTAATTTTAGT TERM 4169 2878111 - 2878129 + g 77 -9 -3.68988 | overlap 2878109 ATCTTCAAATTTGGT TTTAGGTT CCC AACCTAAA TCTTCTTTAATTTTA TERM 4170 2878951 - 2878963 + g 70 -3.5 -5.02439 | TAATTTATCTAGATT TATTA TTT TAATA TTTTTATACTTATCT rfbD 2879958 - 2879062 - | dTDP-4-dehydrorhamnose reductase rfbA 2880880 - 2879960 - | glucose-1-phosphate thymidylyltransferase CLD_1860 2882437 - 2881331 - | spore coat polysaccharide biosynthesis protein SpsC CLD_1859 2883455 - 2882463 - | UDP-glucose 4-epimerase CLD_1858 2884173 - 2883511 - | putative methyltransferase type 11 CLD_1857 2885229 - 2884201 - | hypothetical protein CLD_1856 2886900 - 2885755 - | putative carbamoyl-phosphate synthase large chain CLD_1855 2887970 - 2886918 - | hypothetical protein CLD_1854 2888971 - 2887967 - | N-acylneuraminate-9-phosphate synthase CLD_1853 2890127 - 2888976 - | UDP-N-acetylglucosamine 2-epimerase TERM 4171 2889865 - 2889892 + g 76 -7 -4.48299 | opp_overlap 2889872 AACCTTTCAAAGGTT TGAGAAAGCTGA ATCA TCAGCATTCCCA TTTCTTTAGCTATAA TERM 4172 2889885 - 2889872 - G 71 -6.7 -3.88583 | opp_overlap 2889865 CAAAGGTTTGAGAAA GCTGA ATCA TCAGC ATTCCCATTTCTTTA CLD_1852 2890806 - 2890141 - | LmbE family protein CLD_1851 2891693 - 2890806 - | bifunctional polymyxin resistance protein ArnA CLD_1850 2892400 - 2891690 - | acylneuraminate cytidylyltransferase TERM 4173 2891877 - 2891889 + g 74 -9.1 -2.88337 | overlap 2891874 ATTCTATATACTCTA GGCAG GTC CTGCC TCCTTGTAATCTGCT CLD_1849 2893466 - 2892390 - | nucleotidyl transferase TERM 4174 2893007 - 2893031 + g 72 -7.9 -3.5764 | opp_overlap 2893006 AGTTATTTATTATAT GTTGGAGCATA GGA TGTTCTCCAAC TTTCAGCATAGGCTT TERM 4175 2893252 - 2893275 + g 90 -7.6 -5.31275 | opp_overlap 2893252 TAACTTTCATTGAAA CATATGCAAT TTTT ATTGTATATG TTTTTTATGCTGGAG CLD_1848 2896322 - 2893491 - | glycosyl transferase family protein TERM 4176 2895472 - 2895498 + g 100 -11.2 -3.99347 | overlap 2895470 CCTAAATTTTTCTTA TTATGATAATAT TTT ATATTATCATAA TTATTTAAATAATTT CLD_1847 2898453 - 2896315 - | glycosyltransferase TERM 4177 2896873 - 2896861 - G 71 -4.9 -4.68994 | ATTAGCATTTAAAAA TTCTT TAG AAGAA AAAATCTCCTTAATC TERM 4178 2898313 - 2898331 + g 71 -9 -2.88215 | overlap 2898310 2898315 2898317 TAATATTACAGCTTT CATAGATA TTA TATCTATG TCATCTTTAGTACTG TERM 4179 2898360 - 2898378 + g 81 -4.6 -5.34655 | TGTCTTCAAATTTTC GAATCAAA CTT TTTGCTTC TTTTATTTTTCCTTC CLD_1846 2898844 - 2898482 - | hypothetical protein CLD_1845 2900016 - 2898931 - | glycosyl transferase family protein TERM 4180 2899864 - 2899877 + g 73 -3.9 -5.27206 | ATTGATTATTTGAAT CTTTT TATC AAAAG TTTTTATTATATCTA CLD_1844 2902162 - 2900057 - | glycosyltransferase TERM 4181 2901584 - 2901598 + g 74 -7.2 -3.87325 | TGGGTTATCTCTTAA TTGCTT AAA AAGCAA TTCTATGTTTCTTTT TERM 4182 2902223 - 2902234 + r 70 -3 -5.4833 | opp_overlap 2902223 ACTTTATAAAAATTA CTTA AGAA TAAG TTTTTTATTGAATAC TERM 4183 2902474 - 2902451 - R 100 -12.6 -5.39721 | opp_overlap 2902451 2902454 TCATTATATAAAAAA GAAGTCAGAA TGAA TTCTGACTTC TTTTAAAATTAAATT TERM 4184 2902451 - 2902474 + r 100 -12.6 -4.20354 | opp_overlap 2902451, overlap 2902454 TCATTATATAAAAAA GAAGTCAGAA TGAA TTCTGACTTC TTTTAAAATTAAATT TERM 4185 2902454 - 2902471 + r 80 -8.5 -4.21933 | opp_overlap 2902451, overlap 2902451 TTATATAAAAAAGAA GTCAGAA TGAA TTCTGAC TTCTTTTAAAATTAA CLD_1843 2903324 - 2902494 - | flagellin TERM 4186 2903604 - 2903618 + r 73 -2.2 -5.69068 | overlap 2903605 2903613 TATCGAATTTCTTTT TTTATA CTT TATAAG TTTTTTATATTTTTG CLD_1842 2903964 - 2903623 - | hypothetical protein CLD_1841 2906435 - 2903973 - | flagellar hook-associated protein TERM 4187 2904374 - 2904386 + g 82 -6.3 -5.18561 | overlap 2904373 ATACTTTATCTGGAT CTTCT TTA AGAAG TTTTTTAAGTCTTTC fliS 2906843 - 2906457 - | flagellar protein FliS TERM 4188 2906798 - 2906808 + g 70 -4 -4.91459 | CCTTTGAAGCAAAGT TAAC ACT GTTA TTTTTATAAGTATTG TERM 4189 2906894 - 2906917 + r 100 -9.8 -4.90917 | ATTATTTTTTAGTAT CTATTATAGT TCCT ACTATAATAG TTTTTCCTTCCATTT CLD_1839 2907179 - 2906880 - | hypothetical protein CLD_1838 2907593 - 2907237 - | flagellar protein FlaG csrA 2907827 - 2907609 - | carbon storage regulator TERM 4190 2907674 - 2907692 + g 71 -4.6 -4.76075 | TTTTATTTTCCTCTT GAACTTCA TTA TAAAGTTC TTTTCTTAGTATAGT CLD_1836 2908258 - 2907827 - | hypothetical protein flgL 2909288 - 2908326 - | flagellar hook-associated protein 3 flgK 2911171 - 2909306 - | flagellar hook-associated protein FlgK TERM 4191 2909941 - 2909928 - G 74 -5.3 -4.99035 | opp_overlap 2909926 2909928 GCATTTACAGAAAAA GCTAA AGCT TTAGC TAATTTATTTAACTG TERM 4192 2910270 - 2910283 + g 81 -3.8 -5.55664 | GTTACTGTATATTCA CCAG CTTCTC CTGG TTTTTTTCCTGCTGG TERM 4193 2911425 - 2911436 + r 71 -5.8 -4.69326 | opp_overlap 2911425, overlap 2911417 GCAGAGACTATGTAA GGCT ATAT AGCC TTTTGTCTTGCCTGT CLD_1833 2911857 - 2911453 - | flgN family protein TERM 4194 2911789 - 2911820 + g 71 -4.6 -4.70107 | CTTATGTTGATCATC TAGAAGGCTTAAAA GTTC TTTTAATACTTCTA TTTCTTCTTTTAATG CLD_1832 2912138 - 2911857 - | regulator of flagellin synthesis FlgM TERM 4195 2912502 - 2912554 + r 100 -27.1 -3.19522 | opp_overlap 2912504 2912510, overlap 2912510 ATATTTTCTTTCTAA GATTAAAAGCTATGAATTTAAAATA TTA TATTTTAAATTCATAGCTTTTAATC TTAACTATTAAATAG TERM 4196 2912552 - 2912504 - R 100 -23.9 -3.01791 | opp_overlap 2912502 2912510, overlap 2912510 ATTTTCTTTCTAAGA TTAAAAGCTATGAATTTAAAATA TTA TATTTTAAATTCATAGCTTTTAA TCTTAACTATTAAAT TERM 4197 2912510 - 2912546 + r 100 -18.5 -4.43681 | opp_overlap 2912504 2912510, overlap 2912502 TTTCTAAGATTAAAA GCTATGAATTTAAAATA TTA TATTTTAAATTCATAGC TTTTAATCTTAACTA TERM 4198 2912546 - 2912510 - R 100 -18.5 -4.4261 | opp_overlap 2912510 2912502, overlap 2912504 TTTCTAAGATTAAAA GCTATGAATTTAAAATA TTA TATTTTAAATTCATAGC TTTTAATCTTAACTA fliN 2913888 - 2912728 - | flagellar motor switch protein FliN TERM 4199 2913574 - 2913588 + g 77 -7.2 -4.2349 | opp_overlap 2913556 TAGGTTTTCTCCTAC TATACC ACT GGTATA TTTTACCTCTAGCGC fliM 2914876 - 2913881 - | flagellar motor switch protein FliM CLD_1829 2915299 - 2914904 - | putative chemotaxis protein CheW TERM 4200 2915362 - 2915324 - R 71 -5.4 -4.64861 | overlap 2915325 TCCTCTCAAAATAAA CTATCAGTGCATTAAGAA ACT TGCCTAATGCACCTATAA GTTTTAAACTTTAAG cheY 2915758 - 2915399 - | chemotaxis protein CheY cheC 2916385 - 2915786 - | chemotaxis protein CheC cheA 2918486 - 2916615 - | chemotaxis protein CheA cheR 2919269 - 2918499 - | chemotaxis protein methyltransferase CheR TERM 4201 2918587 - 2918561 - G 75 -7.4 -4.1021 | CTTTATAATTATAAA TGCTTTCTGTAG CTC CTACAAAAAGTA AGCCTCCTTTTTTCA TERM 4202 2918597 - 2918615 + g 74 -6.1 -4.43576 | AAAGTAAGCCTCCTT TTTTCAG TGACT CTGAAAA TTTCTTATATATACT cheB 2920348 - 2919284 - | protein-glutamate methylesterase CheB TERM 4203 2919833 - 2919857 + g 73 -3.7 -5.26918 | overlap 2919835 TCCTATAACTACAGC TTCTATTTTTT TTG AAGAAATAGTA TTTTTTATAGGATAT TERM 4204 2919835 - 2919855 + g 72 -6.3 -4.26475 | overlap 2919833 CTATAACTACAGCTT CTATTTTTT TTG AAGAAATAG TATTTTTTATAGGAT cheD 2920859 - 2920371 - | chemotaxis protein CheD cheW 2921322 - 2920876 - | chemotaxis protein CheW CLD_1821 2923371 - 2921338 - | hypothetical protein CLD_1820 2925579 - 2923624 - | PTS system, glucose family, IIABC component TERM 4205 2925351 - 2925368 + g 80 -9.9 -3.35371 | opp_overlap 2925353 TTAATTGGCCTACTA TAGCAGC TAAA GCTGCTA TTCCTTCCCCATCTG TERM 4206 2925611 - 2925642 + r 89 -9.6 -4.29493 | opp_overlap 2925619, overlap 2925612 2925619 TAAGCTTGCTTATAG TTTAAAAACCTTGC AAAA GCAAGGTTTTTTAG TTTATATATTTAATA TERM 4207 2925612 - 2925641 + r 90 -10.9 -3.16611 | opp_overlap 2925619, overlap 2925611 2925619 AAGCTTGCTTATAGT TTAAAAACCTTGC AAAA GCAAGGTTTTTTA GTTTATATATTTAAT TERM 4208 2925634 - 2925619 - R 89 -9 -4.64766 | opp_overlap 2925612 2925611 2925619 CTTATAGTTTAAAAA CCTTGC AAAA GCAAGG TTTTTTAGTTTATAT TERM 4209 2925619 - 2925634 + r 100 -9 -5.4387 | opp_overlap 2925619, overlap 2925612 2925611 CTTATAGTTTAAAAA CCTTGC AAAA GCAAGG TTTTTTAGTTTATAT CLD_1819 2926489 - 2925662 - | BglG family transcriptional antiterminator CLD_1818 2927571 - 2926738 - | putative branched-chain amino acid aminotransferase CLD_1817 2928339 - 2927698 - | HAD family hydrolase TERM 4210 2928591 - 2928555 - R 100 -16.2 -4.07675 | gap 1, opp_overlap 2928561 2928587, overlap 2928561 TTAAAATTAACCAAA GC-AAAAGAGTCTCTGT AATG ACAGAGACTCTTTTTGC AATACTATTGTAGAG TERM 4211 2928584 - 2928561 - R 100 -14 -4.62054 | opp_overlap 2928561, overlap 2928555 TTAACCAAAGCAAAA GAGTCTCTGT AATG ACAGAGACTC TTTTTGCAATACTAT TERM 4212 2928561 - 2928584 + r 100 -14 -4.63928 | opp_overlap 2928555 2928561 TTAACCAAAGCAAAA GAGTCTCTGT AATG ACAGAGACTC TTTTTGCAATACTAT CLD_1816 2929000 - 2928596 - | hypothetical protein TERM 4213 2929027 - 2929006 - R 81 -7.3 -4.83615 | opp_overlap 2929007, overlap 2929007 CATCTTTCATAAAAA CTCCTGGTA ATAT TACCAGGAT CTTCACCTCCTTTTT TERM 4214 2929026 - 2929007 - R 91 -10.8 -3.49687 | opp_overlap 2929007, overlap 2929006 ATCTTTCATAAAAAC TCCTGGTA ATAT TACCAGGA TCTTCACCTCCTTTT TERM 4215 2929007 - 2929026 + r 85 -10.8 -3.09131 | opp_overlap 2929007 2929006 ATCTTTCATAAAAAC TCCTGGTA ATAT TACCAGGA TCTTCACCTCCTTTT TERM 4216 2929074 - 2929086 + r 76 -2.7 -5.88061 | opp_overlap 2929074, overlap 2929074 2929075 TACCCTTAAACAGAG CTTTT TAA AAGAG TTTTTTTACTTTTTT TERM 4217 2929230 - 2929188 - R 100 -8.9 -4.91511 | gap 1, overlap 2929190 ATTTTATGATAAAAA TAT-ACCAAGTAAATAATTA ATAT TAACTATTTACTCGGTAATA AAATATTTCTATAGT TERM 4218 2929227 - 2929190 - R 100 -13.1 -4.08042 | overlap 2929188 TTTATGATAAAAATA TACCAAGTAAATAATTA ATAT TAACTATTTACTCGGTA ATAAAATATTTCTAT CLD_1815 2929377 - 2929261 - | hypothetical protein TERM 4219 2929616 - 2929646 + r 84 -9.3 -3.67134 | gap 1, opp_overlap 2929616 2929624, overlap 2929601 2929618 2929624 GCTCTTTATATTTAA TAA-AAAAAGAGCC TTTC GGCTCTTTTTATTA TTGTTCAGCTAATTT TERM 4220 2929646 - 2929616 - R 80 -9.3 -3.12351 | gap 1, opp_overlap 2929601 2929616 2929618 2929624, overlap 2929624 GCTCTTTATATTTAA TAA-AAAAAGAGCC TTTC GGCTCTTTTTATTA TTGTTCAGCTAATTT TERM 4221 2929618 - 2929643 + r 81 -9.1 -3.96068 | opp_overlap 2929616 2929624, overlap 2929601 2929616 2929624 TCTTTATATTTAATA AAAAAAGAGCC TTTC GGCTCTTTTTA TTATTGTTCAGCTAA TERM 4222 2929624 - 2929637 + r 100 -8.1 -5.3798 | opp_overlap 2929616 2929624, overlap 2929601 2929618 2929616 TATTTAATAAAAAAA GAGCC TTTC GGCTC TTTTTATTATTGTTC TERM 4223 2929637 - 2929624 - R 100 -8.1 -5.8187 | opp_overlap 2929601 2929624 2929618 2929616, overlap 2929616 TATTTAATAAAAAAA GAGCC TTTC GGCTC TTTTTATTATTGTTC CLD_1814 2933222 - 2929644 - | pyruvate ferredoxin oxidoreductase TERM 4224 2933279 - 2933259 - R 74 -6.2 -4.57474 | TTAATTTATATAAAA TTTACGGA ATAAA TCCGCAAA ATAATTAACATTTGT TERM 4225 2933737 - 2933720 - R 73 -2.1 -5.73563 | ATTAAAGTAAAAAAA TAATATA TATA TACATTA ACATTCAATAATTTT murG 2934919 - 2933855 - | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase CLD_1812 2935244 - 2935408 + | hypothetical protein TERM 4226 2935509 - 2935471 - T 83 -7.1 -4.92757 | gap 2, opp_overlap 2935471 GCATTAACAATAAAA GCCCTATTTAATTGTAAAT TTT ATTTAC--CTAAATAGGGC TTTATATATTTTCTA CLD_1811 2937630 - 2935522 - | sensory box histidine kinase TERM 4227 2935828 - 2935840 + g 73 -3.5 -5.186 | overlap 2935833 TTCATCCTTTACTAT TAATT TAA AATTA TTTTTATATATTTTA recJ 2940561 - 2938780 - | single-stranded-DNA-specific exonuclease RecJ CLD_1809 2940752 - 2941570 + | AP endonuclease CLD_1808 2943259 - 2941856 - | NHL repeat-containing protein TERM 4228 2943407 - 2943453 + r 82 -10.3 -2.91912 | gap 1, opp_overlap 2943419 TTTATCCGATGACTA CCCGCTCTAATACTCCCATCTT CTTA AAAATGGGAGTAA-AGAGCGGC TATGTCCCTGGATAA TERM 4229 2943442 - 2943419 - R 85 -10.4 -3.02144 | opp_overlap 2943407 CTACCCGCTCTAATA CTCCCATCTT CTTA AAAATGGGAG TAAAGAGCGGCTATG TERM 4230 2943625 - 2943615 - R 70 -2.6 -5.5353 | GATAGTAACAAAAAA TTTT ATT AAAA GCACTAAATATATGC TERM 4231 2944087 - 2944064 - R 88 -6.8 -5.55664 | opp_overlap 2944064 CTATTATGAAAAAAA CTACACCCTT TGTA AAGAATGTAG TAAATTAGTTAATTC CLD_1807 2945461 - 2944253 - | M16 family peptidase TERM 4232 2945023 - 2945039 + g 70 -3.8 -5.12707 | TTAATTCTTTTATTC TTCTTT CTCTA AAAGAA TTTTTTAGCATTTGA TERM 4233 2945499 - 2945477 - H 75 -9.4 -2.59431 | opp_overlap 2945477, overlap 2945473 TTTCTCCATAATTTA TATTTTAATC AAA GATTAAAATA TTATCACCTCTCTTA TERM 4234 2945477 - 2945499 + H 82 -9.4 -3.36648 | opp_overlap 2945477 2945473 TTTCTCCATAATTTA TATTTTAATC AAA GATTAAAATA TTATCACCTCTCTTA TERM 4235 2945752 - 2945699 - H 100 -16.9 -3.28924 | opp_overlap 2945700 2945700 2945703 2945704, overlap 2945702 2945729 TACGTCCTTGGATAA CCATTTCCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAACTCTG TTTATATATTATAGC TERM 4236 2945700 - 2945750 + H 100 -16.5 -3.71649 | gap 1, opp_overlap 2945699 2945702 2945729, overlap 2945700 2945703 2945704 ACGTCCTTGGATAAC CATTTCCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAG-AACTC TGTTTATATATTATA TERM 4237 2945700 - 2945752 + H 100 -14.4 -4.24786 | gap 1, opp_overlap 2945699 2945702 2945729, overlap 2945700 2945703 2945704 ACGTCCTTGGATAAC CA-TTTCCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAACTCTG TTTATATATTATAGC TERM 4238 2945749 - 2945702 - H 100 -19.4 -2.82623 | opp_overlap 2945700 2945700 2945703 2945704, overlap 2945699 2945729 GTCCTTGGATAACCA TTTCCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAACT CTGTTTATATATTAT TERM 4239 2945703 - 2945748 + H 100 -20.7 -3.42088 | opp_overlap 2945702 2945699 2945729, overlap 2945700 2945700 2945704 TCCTTGGATAACCAT TTCCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAAC TCTGTTTATATATTA TERM 4240 2945704 - 2945747 + H 100 -24.2 -2.64168 | opp_overlap 2945702 2945699 2945729, overlap 2945703 2945700 2945700 CCTTGGATAACCATT TCCTAAGCTTCAGAGGGAGT AAAA ACTCCCTCTGAAGCTTAGAA CTCTGTTTATATATT TERM 4241 2945935 - 2945977 + H 78 -7.5 -4.20769 | gap 1, opp_overlap 2945945, overlap 2945962 GATGAACCACCTCAT TTATTTCA-AATATTATACT TTAA AGTATAATATTGTGATATAA TTTATGTTAAAATAT TERM 4242 2945966 - 2945945 - H 72 -7.5 -3.61178 | opp_overlap 2945935 2945962 CTCATTTATTTCAAA TATTATACT TTAA AGTATAATA TTGTGATATAATTTA TERM 4243 2946356 - 2946388 + G 76 -6.3 -4.64846 | opp_overlap 2946356 2946358, overlap 2946351 TTCTTTGGTCCAATA TATCTGCACTCATAG CTT CAATGGGTACAGGTA TTTTGTCATTTCTAA CLD_1806 2946025 - 2946435 + | hypothetical protein CLD_1805 2946503 - 2947054 + | DJ-1 family protein TERM 4244 2947193 - 2947154 - T 73 -8.8 -2.90615 | gap 1, opp_overlap 2947161 2947190, overlap 2947157 2947158 2947160 ATTTCCCCTAAAGGA TAAC-GACTTCTAAGGAGT AAA ACTCCTAAGAATTCTGTTA ATAAGCTTCAGAGAG TERM 4245 2947188 - 2947158 - T 79 -9.8 -2.75769 | opp_overlap 2947161, overlap 2947157 2947154 2947160 CCCCTAAAGGATAAC GACTTCTAAGGAGT AAA ACTCCTAAGAATTC TGTTAATAAGCTTCA TERM 4246 2947161 - 2947185 + T 90 -10.1 -3.71552 | opp_overlap 2947160 2947158 2947157 2947154 CTAAAGGATAACGAC TTCTAAGGAGT AAA ACTCCTAAGAA TTCTGTTAATAAGCT TERM 4247 2947229 - 2947198 - T 100 -18.2 -3.62522 | opp_overlap 2947190 GAATTCTGTTAATAA GCTTCAGAGAGAGT CTTT ACTCCCTCTGAAGC CAAGAACTCTGTTTA glpP 2948021 - 2947458 - | glycerol uptake operon antiterminator regulatory protein CLD_1803 2950940 - 2948070 - | GyrA/ParC subunit family DNA topoisomerase TERM 4248 2951006 - 2950984 - R 83 -9.3 -3.64103 | opp_overlap 2950984 2950983 TATTTACATGGCAAA GGCTAAATA TATAT TATTTAGCC CTTTTATCTAAAACT TERM 4249 2950984 - 2951006 + r 82 -9.3 -3.315 | opp_overlap 2950984, overlap 2950983 TATTTACATGGCAAA GGCTAAATA TATAT TATTTAGCC CTTTTATCTAAAACT CLD_1802 2952969 - 2951014 - | GyrA/ParC subunit family DNA topoisomerase TERM 4250 2951466 - 2951501 + g 70 -4.2 -4.99435 | opp_overlap 2951466 2951468, overlap 2951495 CTTCCTCTTTATAAT TATCTAATACACCTGT ACCT ATAGCTGTATTAAATA TTTTTAATTCTTCAC TERM 4251 2952266 - 2952276 + g 70 -4 -4.87803 | opp_overlap 2952248 AAAAGACCTCTTTCA GAAT GAT ATTC TTTTATTTCCGGCTC TERM 4252 2953256 - 2953225 - R 100 -10.4 -5.22039 | opp_overlap 2953230 TTCAAACTTAAAAAA TAATATGCTGATAT ATAA ATATCTGCATATTA AAATAGTATATATAT CLD_1801 2953713 - 2953336 - | hypothetical protein TERM 4253 2953751 - 2953763 + H 80 -3.5 -5.81412 | TTCTCTTACTATCTT TATAT GCT ATATA TTTTTTTTGGATAGA TERM 4254 2953867 - 2953840 - H 72 -3.7 -5.31519 | opp_overlap 2953841 2953856, overlap 2953841 ATATGTAAACAAAAA CTTTAAAATTT TTATAT AAATTTTAAAA TTAATAAAATTTATT TERM 4255 2954144 - 2954155 + G 70 -4.4 -4.98857 | opp_overlap 2954144 CTGTCATAAAAAAAT TAGG CAAG CCTA TTTTTATAATTGCAT TERM 4256 2954279 - 2954254 - g 71 -8.9 -2.73994 | overlap 2954238 ACTGCCCTAATATTA GGAGCAGTAGC CTCT GCGACAGCTCC AGCGGCTACAGTAAT CLD_1800 2953900 - 2955072 + | monovalent cation:proton antiporter-2 (CPA2) family protein TERM 4257 2955363 - 2955375 + G 71 -5.5 -4.42513 | opp_overlap 2955363 AGATATAGATAATAA GCCTG GTA TAGGC TTTATGTTTGTGCTT CLD_1799 2955085 - 2955435 + | hypothetical protein TERM 4258 2955934 - 2955948 + G 76 -5 -5.15682 | AACTAATTTTATTAC TAGCTG TTA CAGTTA TTTTATTTATATTTT CLD_1798 2955897 - 2956133 + | hypothetical protein CLD_1797 2956153 - 2957046 + | polysaccharide deacetylase family protein TERM 4259 2957039 - 2957075 + T 100 -16.2 -3.29013 | opp_overlap 2957030 2957044 2957047, overlap 2957044 CAAAAACAAGCTTTA CGAAATAAGGAAAGTG CTATA CACTTTCCTTATTTTG TTACATTCTTGGAGT TERM 4260 2957070 - 2957044 - T 100 -13.2 -3.75015 | opp_overlap 2957039 2957044, overlap 2957030 2957047 ACAAGCTTTACGAAA TAAGGAAAGTGC TAT ACACTTTCCTTA TTTTGTTACATTCTT TERM 4261 2957044 - 2957070 + T 100 -12.5 -4.74539 | opp_overlap 2957044 2957030 2957047, overlap 2957039 ACAAGCTTTACGAAA TAAGGAAAGTG CTATA CACTTTCCTTA TTTTGTTACATTCTT TERM 4262 2957067 - 2957047 - T 95 -10.5 -4.0031 | opp_overlap 2957044 2957039, overlap 2957044 2957030 AGCTTTACGAAATAA GGAAAGTGC TAT ACACTTTCC TTATTTTGTTACATT CLD_1796 2958414 - 2957125 - | hypothetical protein galE 2959432 - 2958452 - | UDP-glucose 4-epimerase TERM 4263 2959793 - 2959809 + r 80 -9.5 -3.20751 | overlap 2959791 ATTATACTAATTTTT GTGCAAA AGC TTTGCAC TCTTCCATTGTTGAA CLD_1794 2960195 - 2959779 - | flavodoxin TERM 4264 2960302 - 2960288 - R 82 -4.4 -5.80817 | overlap 2960295 GCTAATATAAAAAAA TAAAAA GTA TTTTTA AATAAAATAAATAGT CLD_1793 2961884 - 2960463 - | MATE efflux family protein TERM 4265 2960628 - 2960612 - G 77 -8.1 -3.73509 | ATATTAAATCTGAAA TTGGATA AGC TATCCAA GCTCCCATGATATCA TERM 4266 2960859 - 2960847 - G 74 -6.3 -4.40963 | opp_overlap 2960847, overlap 2960844 ATCCTTTAAAAATAA TCCTA TTA TAGGA TTTGCAAATATAAGC TERM 4267 2962263 - 2962278 + r 70 -7.6 -3.41907 | opp_overlap 2962263, overlap 2962262 2962276 CAATAAACAAAAAAA CACCTT ATTT AAGGTG CTTTTGTACTTTTTG TERM 4268 2962278 - 2962263 - R 100 -7.6 -6.08342 | opp_overlap 2962263 2962262 2962276 CAATAAACAAAAAAA CACCTT ATTT AAGGTG CTTTTGTACTTTTTG TERM 4269 2962518 - 2962489 - R 85 -8.1 -4.66609 | opp_overlap 2962504, overlap 2962491 GATTTTATCTAAAAA TATATTTATACTC TTTG GAGTATAAATAAA AATGCTCCATATCCT TERM 4270 2962516 - 2962491 - R 95 -10.7 -3.94812 | opp_overlap 2962504, overlap 2962489 TTTTATCTAAAAATA TATTTATACTC TTTG GAGTATAAATA AAAATGCTCCATATC CLD_1792 2964560 - 2962494 - | AraC family transcriptional regulator TERM 4271 2965308 - 2965290 - g 71 -4.6 -4.72201 | opp_overlap 2965290 CGTTATAAAAAATAA TCCTAAAA TAT TTATAGGA TATTCTGATACCACT CLD_1791 2964961 - 2965998 + | LD-carboxypeptidase family protein CLD_1790 2966183 - 2966350 + | hypothetical protein glpK 2968009 - 2966513 - | glycerol kinase CLD_1788 2968965 - 2968261 - | glycerol uptake facilitator protein CLD_1787 2969500 - 2969820 + | hypothetical protein TERM 4272 2969849 - 2969886 + T 72 -5.1 -5.04175 | gap 1, opp_overlap 2969850, overlap 2969850 TTTTAATATAAAAAA ATGCTAGTAAT-ATTAAC TTA GTTATTAATTACTAGCAC TTTTTATATCATTAA TERM 4273 2969885 - 2969850 - T 100 -8.6 -5.80817 | gap 1, opp_overlap 2969849 2969850 TTTAATATAAAAAAA TGCTAGTAAT-ATTAAC TTA GTTATTAATTACTAGCA CTTTTTATATCATTA TERM 4274 2969850 - 2969885 + T 75 -8.6 -3.61421 | gap 1, opp_overlap 2969850, overlap 2969849 TTTAATATAAAAAAA TGCTAGTAAT-ATTAAC TTA GTTATTAATTACTAGCA CTTTTTATATCATTA CLD_1786 2970630 - 2969932 - | VanZ family membrane protein TERM 4275 2970751 - 2970731 - R 90 -11.9 -3.10343 | opp_overlap 2970731, overlap 2970736 ATATTTATTATTTAA GGAAAGTGC ACC GCACTTCCC TTATAAACAGAGTTC TERM 4276 2970731 - 2970751 + r 80 -9.7 -3.29461 | opp_overlap 2970731 2970736 ATATTTATTATTTAA GGAAAGTGC ACC GCACTTCCC TTATAAACAGAGTTC TERM 4277 2970811 - 2970759 - R 100 -23.2 -3.86015 | gap 1, opp_overlap 2970760 2970761 2970763, overlap 2970761 2970764 CACTTCCCTTATAAA CAGAGTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC-G TTATCCAGAGATGTA TERM 4278 2970760 - 2970811 + r 100 -23.4 -3.29829 | opp_overlap 2970759 2970761 2970764, overlap 2970761 2970763 ACTTCCCTTATAAAC AGAGTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATCG TTATCCAGAGATGTA TERM 4279 2970761 - 2970810 + r 100 -26.9 -2.57683 | opp_overlap 2970759 2970761 2970764, overlap 2970760 2970763 CTTCCCTTATAAACA GAGTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGAGATGT TERM 4280 2970810 - 2970761 - R 100 -26.9 -3.51934 | opp_overlap 2970761 2970760 2970763, overlap 2970759 2970764 CTTCCCTTATAAACA GAGTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAATC GTTATCCAGAGATGT TERM 4281 2970763 - 2970808 + r 100 -23.7 -2.82742 | opp_overlap 2970761 2970759 2970764, overlap 2970761 2970760 TCCCTTATAAACAGA GTTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAAA TCGTTATCCAGAGAT TERM 4282 2970807 - 2970764 - R 100 -27.2 -2.59797 | opp_overlap 2970763 2970761 2970760, overlap 2970761 2970759 CCCTTATAAACAGAG TTCTAAGCTTTAGAGGGAGT TTTT ACTCCCTCTAAAGCTTAGAA ATCGTTATCCAGAGA CLD_1785 2971968 - 2970892 - | ABC transporter, permease protein CLD_1784 2972848 - 2971952 - | ABC transporter, ATP-binding protein CLD_1783 2973234 - 2972854 - | GntR family transcriptional regulator CLD_1782 2973923 - 2973408 - | VanZ family membrane protein CLD_1781 2974244 - 2975956 + | hybrid cluster protein CLD_1780 2976437 - 2977027 + | membrane-spanning protein TERM 4283 2977997 - 2977984 - g 73 -3.9 -5.31072 | AGAATATAATAAAAA CAAAA GGTA TTTTG TAGCTAATATGCCTA CLD_1779 2977271 - 2978503 + | aminopeptidase II TERM 4284 2978545 - 2978594 + T 100 -11.3 -4.36127 | gap 1, opp_overlap 2978551 2978552, overlap 2978552 CACCTTATTTTTTAA TGAAAAGGATATGAATTT-AAATA CAA TATTACAAATTCATATCTTTTTCA TTTTCAATTATTAAA TERM 4285 2978552 - 2978587 + T 78 -5.8 -5.10154 | gap 1, opp_overlap 2978552 2978551, overlap 2978545 TTTTTTAATGAAAAG GATATGAATTT-AAATA CAA TATTACAAATTCATATC TTTTTCATTTTCAAT gerAC 2979836 - 2978691 - | spore germination protein TERM 4286 2979462 - 2979452 - GT 78 -4 -5.45813 | opp_overlap 2979452 GATTAAAAAATAAAA GATT GGT AATC TCATTTAATCCATCA CLD_1777 2980923 - 2979790 - | spore germination protein gerAA 2982400 - 2980913 - | spore germination protein TERM 4287 2980956 - 2980970 + g 71 -2.1 -5.37171 | overlap 2980947 TTTTTTCTAAAATCC TCTTG ACGCA CAGGA TTTTTGTTTGGTATT TERM 4288 2982530 - 2982565 + r 100 -16.6 -5.65678 | opp_overlap 2982530 AATTCCGTTAAAAAA CACTATGAAAATTTAT TTAA ATAAATTTTCATAGTG TTTTTTATGTTTTAT TERM 4289 2982565 - 2982530 - R 100 -16.6 -5.01732 | opp_overlap 2982530 AATTCCGTTAAAAAA CACTATGAAAATTTAT TTAA ATAAATTTTCATAGTG TTTTTTATGTTTTAT CLD_1775 2982866 - 2982657 - | hypothetical protein TERM 4290 2982960 - 2982992 + r 73 -7.3 -4.11216 | ATAATCAATTGTGGA TTTCATAATAATTTT ATT GGAATTGTTATGAAA TTTTCCAAGTAAAAA TERM 4291 2983009 - 2983050 + r 72 -4 -5.32699 | gap 1, opp_overlap 2983009 TTTCCAAGTAAAAAA CTCTTTTTAAGTTACATAT CTAAT ATACGCA-CTTAAAAAGAG TTTTTTAATATTTAA TERM 4292 2983050 - 2983009 - R 95 -8.4 -5.26875 | gap 1, opp_overlap 2983009 TTTCCAAGTAAAAAA CTCTTTTTAAGTTACATAT CTAAT ATACGCA-CTTAAAAAGAG TTTTTTAATATTTAA CLD_1774 2983394 - 2983077 - | pyridoxal biosynthesis lyase PdxS TERM 4293 2983624 - 2983592 - R 100 -8.7 -5.4492 | opp_overlap 2983592 2983594, overlap 2983594 GATATACATAAAAAA TACTCTTAGAAATTA TAT CAATTTCTAAAAGCA TTTTTAAATAATTAT TERM 4294 2983622 - 2983594 - R 84 -9.1 -4.34353 | opp_overlap 2983592 2983594, overlap 2983592 TATACATAAAAAATA CTCTTAGAAATTA TAT CAATTTCTAAAAG CATTTTTAAATAATT CLD_1773 2984472 - 2983741 - | polysaccharide deacetylase family protein TERM 4295 2984647 - 2984607 - R 93 -9.3 -4.69962 | opp_overlap 2984612 2984638, overlap 2984612 TACATCAAAAAATAA CAAAAGCTAAGAAACAAAT AAA ATTTACCTCTTAGCTTCTA AATTCTCTAGTAATT TERM 4296 2984642 - 2984612 - R 100 -9.2 -5.22104 | opp_overlap 2984612 2984638, overlap 2984607 CAAAAAATAACAAAA GCTAAGAAACAAAT AAA ATTTACCTCTTAGC TTCTAAATTCTCTAG CLD_1772 2986266 - 2984692 - | DEAD-box ATP dependent DNA helicase TERM 4297 2986324 - 2986298 - R 100 -11.7 -4.8622 | GTTGTTAATTAAAAA TGGCTGTTGAC ATATA ATCAACAGCCA ATAAAAAATCTTTTC CLD_1771 2986510 - 2986343 - | hypothetical protein CLD_1770 2986942 - 2987367 + | hypothetical protein TERM 4298 2987409 - 2987445 + T 80 -6.1 -5.2197 | opp_overlap 2987409 TTTAAAAATTAAAAA GCTATATATTTGTAA CCATATA TTACAAATGCATAGC TTTTTAATTTTTATA TERM 4299 2987445 - 2987409 - T 83 -6.8 -5.18355 | opp_overlap 2987409 TTTAAAAATTAAAAA GCTATATATTTGTAAC CATAT ATTACAAATGCATAGC TTTTTAATTTTTATA CLD_1769 2989150 - 2987456 - | methyl-accepting chemotaxis protein TERM 4300 2988494 - 2988482 - G 74 -7.7 -3.737 | opp_overlap 2988481 2988482 TAACTCCTTATTAAA GTCTC CCT GAGAC ATATTTTCAAGATAT TERM 4301 2989200 - 2989166 - R 72 -7.5 -3.55563 | opp_overlap 2989166 2989168 ATCCTACCTCCTAAA TATGTATAAATTATT TTTCT AGTAATTTATACATA TAATATCGAATTAAT TERM 4302 2989166 - 2989200 + r 75 -9.7 -2.64973 | opp_overlap 2989166, overlap 2989168 ATCCTACCTCCTAAA TATGTATAAATTATT TTTCT AGTAATTTATACATA TAATATCGAATTAAT TERM 4303 2989305 - 2989271 - R 100 -11.8 -5.37593 | opp_overlap 2989271 TTCTAAATTAAAAAA CATTATGAAATTAATT TAA AACTAACTTCATAATG TTTTTATTTTAATAA TERM 4304 2989271 - 2989305 + r 91 -7.4 -5.50723 | opp_overlap 2989271 TTCTAAATTAAAAAA CATTATGAAATTAATT TAA AACTAACTTCATAATG TTTTTATTTTAATAA CLD_1768 2989757 - 2989347 - | universal stress protein family protein TERM 4305 2990344 - 2990368 + H 100 -10.2 -4.62336 | opp_overlap 2990343 2990342 AGTATATTAAAATCT TTATATACCC ATATG GGGTATATAA TTTTTGGAATGAGGT CLD_1767 2990390 - 2991031 + | iron-sulfur cluster-binding protein TERM 4306 2991136 - 2991187 + T 91 -10.5 -3.80461 | opp_overlap 2991136 ATTTATACTCTCAAA TATGGCTATGAAGATAAATTTGT TTTTAT GTAAAGTTACCTTCATAGCCATA TTTAATGATAAATTC TERM 4307 2991187 - 2991136 - T 95 -11.3 -3.5944 | opp_overlap 2991136 ATTTATACTCTCAAA TATGGCTATGAAGATAAATTT GTTTTTATGT AAAGTTACCTTCATAGCCATA TTTAATGATAAATTC CLD_1766 2992208 - 2991291 - | glutaminase TERM 4308 2992616 - 2992595 - R 70 -2.5 -5.45802 | gap 1, overlap 2992600 CCTCTAAAATAAAAA TATATTACTA TCC TAGTA-TATA AACTTTTACACTTCT CLD_1765 2993627 - 2992602 - | hypothetical protein TERM 4309 2992948 - 2992961 + g 71 -3.1 -5.20216 | overlap 2992942 TTACTATCACTGGAT GCTAG CTCT TTAGC TTTTTTACTACTCTC TERM 4310 2993091 - 2993109 + g 71 -3.2 -5.27335 | ATTCTTATTCAATCT TAATAAAG CAA CTTCATTA TTTTTCTTTAAAGCC TERM 4311 2993423 - 2993433 + g 70 -4 -4.94992 | overlap 2993415 CATTAACCTTATTCA TAAG TTG CTTA TTTTTATCAATTTCA TERM 4312 2993786 - 2993761 - R 73 -5.6 -4.86731 | TTTCTTTAAATAAAA TTATAATGAG TAAAAG CTCACTATAA CCTAAGTTCCACTTT TERM 4313 2993894 - 2993873 - R 90 -7.3 -5.39721 | opp_overlap 2993873 2993876 TTATTATATAAAAAA GCAGTGTCC ACTA AGACACTAC TTTAAACCCCTTTGC CLD_1764 2994175 - 2993891 - | putative lipoprotein TERM 4314 2994282 - 2994244 - R 95 -9.9 -4.371 | opp_overlap 2994244, overlap 2994247 TCCATTAGATGAAAA TAAGCTGAATAATATTT GTTTA AAATACTATTCAGCCCA TGTAATGCTCAATTT TERM 4315 2994279 - 2994247 - R 100 -11.6 -4.29905 | opp_overlap 2994244, overlap 2994244 ATTAGATGAAAATAA GCTGAATAATATTT GTTTA AAATACTATTCAGC CCATGTAATGCTCAA CLD_1763 2996366 - 2994306 - | methyl-accepting chemotaxis protein TERM 4316 2995145 - 2995156 + g 70 -5.8 -4.21974 | overlap 2995143 TAGTAATTTCATTTG CTGC TTCT GCAG TTTGTTGACTAGTAG TERM 4317 2995455 - 2995472 + g 70 -4.2 -4.90013 | opp_overlap 2995468 GGAGATAATAAGTAG GTTTCT TACCAT AGAAAC TTTTTCATTAAATTC TERM 4318 2996797 - 2996752 - R 100 -11.5 -3.93383 | opp_overlap 2996752 2996757, overlap 2996757 TTAATATATAGTAAA TAAAAGCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGCTTTTC CTTTTAATGTAAAGA TERM 4319 2996752 - 2996797 + r 80 -9.3 -3.2032 | opp_overlap 2996752 2996757, overlap 2996757 TTAATATATAGTAAA TAAAAGCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGCTTTTC CTTTTAATGTAAAGA TERM 4320 2996792 - 2996757 - R 100 -11.4 -4.98061 | opp_overlap 2996752 2996757, overlap 2996752 ATATAGTAAATAAAA GCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGC TTTTCCTTTTAATGT TERM 4321 2996757 - 2996792 + r 93 -9.2 -4.71222 | opp_overlap 2996757 2996752, overlap 2996752 ATATAGTAAATAAAA GCCATGAAATTAAGTT ATTA ATCTTAATTTCATAGC TTTTCCTTTTAATGT CLD_1762 2997684 - 2996884 - | hypothetical protein TERM 4322 2998005 - 2997958 - R 83 -9.6 -3.60631 | gap 1, opp_overlap 2997955 2997963, overlap 2997963 TAATAAATATTATAA GAAAATAGCCTAACAAAATA-TA TTT TAGCACTTTGTTAGGCTATTTTT ATAACTTTATTTATA TERM 4323 2997963 - 2998000 + r 75 -5.8 -4.95896 | opp_overlap 2997963 2997958, overlap 2997955 AATATTATAAGAAAA TAGCCTAACAAAAT ATATTTTAGC ACTTTGTTAGGCTA TTTTTATAACTTTAT TERM 4324 2998000 - 2997963 - R 95 -9.5 -4.83722 | gap 1, opp_overlap 2997955 2997963, overlap 2997958 AATATTATAAGAAAA TAGCCTAACAAAATA-TA TTT TAGCACTTTGTTAGGCTA TTTTTATAACTTTAT TERM 4325 2998065 - 2998048 - R 72 -8.5 -3.20553 | opp_overlap 2998048, overlap 2998047 CAAGATCATCAAAAT CAAAAGC TGCT GCTTTTG TATAGTTCGTAACCT TERM 4326 2998048 - 2998065 + r 71 -8.5 -2.93901 | opp_overlap 2998047 2998048 CAAGATCATCAAAAT CAAAAGC TGCT GCTTTTG TATAGTTCGTAACCT nrdB 2999056 - 2998028 - | ribonucleoside-diphosphate reductase, beta subunit nrdA 3001543 - 2999252 - | ribonucleoside-diphosphate reductase, alpha subunit TERM 4327 3001710 - 3001720 + H 70 -2.6 -5.55769 | CTTATTTTTTCACTA TATA TTG TATA TTTTTTATTATAGAG TERM 4328 3002860 - 3002850 - g 91 -4 -6.00086 | opp_overlap 3002850, overlap 3002852 ACATGAGAAAAAAAA GATA AAG TATC TTCATAACTGGGAAG TERM 4329 3003301 - 3003289 - g 85 -4.9 -5.66338 | opp_overlap 3003289 AAATACAATAAAAAA TATAG AAA CTATA ATTCTCAAGGGGGAG CLD_1759 3002581 - 3003702 + | hypothetical protein TERM 4330 3003963 - 3003953 - g 72 -5.4 -4.78157 | ATGAAAAATAATAAA GATG AAA CATC ATATAGTATAACTAT TERM 4331 3004102 - 3004083 - g 74 -3 -5.41746 | AATCGGGTAAAAAAA TTCTTTAT GATG ATAAAAAA AATAAAAATTTTGAA CLD_1758 3003938 - 3004789 + | hypothetical protein TERM 4332 3004837 - 3004791 - T 85 -8.3 -4.66535 | gap 1, overlap 3004792 3004795 AAGCTCTAAAATAAA CTAGCCCCTGTGAATAATA-AT ATTA ATATACTATCCACAGGGGTTAA AATTGCTTATCTTTT TERM 4333 3004836 - 3004792 - T 82 -9.6 -3.38836 | gap 1, overlap 3004791 3004795 AGCTCTAAAATAAAC TAGCCCCTGTGAATAATA-AT ATTA ATATACTATCCACAGGGGTTA AAATTGCTTATCTTT TERM 4334 3004833 - 3004795 - T 82 -11.3 -2.54636 | gap 1, overlap 3004792 3004791 TCTAAAATAAACTAG CCCCTGTGAATAATA-AT ATTA ATATACTATCCACAGGGG TTAAAATTGCTTATC dinB 3005998 - 3004949 - | DNA polymerase IV TERM 4335 3005010 - 3005026 + g 73 -8.1 -3.39471 | opp_overlap 3005009 TTTGATACAGTAAGC CCTATAA GTC TTATAGG TTCCTTAAAATTTAT TERM 4336 3006357 - 3006411 + r 100 -20.6 -2.88404 | opp_overlap 3006365 3006376, overlap 3006365 3006376 ATTTTATATAATTTC CTTATAAACAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTGTTTATAAA ATTATTAAATTTTCA TERM 4337 3006365 - 3006403 + r 100 -17.8 -3.95051 | opp_overlap 3006365 3006376, overlap 3006357 3006376 TAATTTCCTTATAAA CAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTG TTTATAAAATTATTA TERM 4338 3006403 - 3006365 - R 100 -17.8 -3.86822 | opp_overlap 3006365 3006357 3006376, overlap 3006376 TAATTTCCTTATAAA CAGATTAAAAACCACTAA TTA TAAGTGGTTTTTAATCTG TTTATAAAATTATTA TERM 4339 3006376 - 3006392 + r 70 -5.1 -4.90217 | opp_overlap 3006365 3006376, overlap 3006365 3006357 TAAACAGATTAAAAA CCACTAA TTA TAAGTGG TTTTTAATCTGTTTA TERM 4340 3006392 - 3006376 - R 70 -5.1 -4.90217 | opp_overlap 3006376 3006365 3006357, overlap 3006365 TAAACAGATTAAAAA CCACTAA TTA TAAGTGG TTTTTAATCTGTTTA CLD_1756 3007698 - 3006463 - | dihydroorotate dehydrogenase family protein TERM 4341 3007490 - 3007500 + g 74 -5.4 -4.93318 | opp_overlap 3007490 TTAAAACCTAAAAAT GAAG TTC CTTC TTTTTGTAAATTATC TERM 4342 3007546 - 3007530 - G 79 -8.1 -3.92143 | opp_overlap 3007522 CAAAACGTGGAGAAA CTTCATT TGC AATGAAG AAGCCTATAGTTTTA CLD_1755 3009014 - 3007698 - | pyridine nucleotide-disulphide oxidoreductase family protein TERM 4343 3008287 - 3008270 - G 71 -7.1 -3.85698 | opp_overlap 3008269 CTTTTCCCTTAGAAA TTTTAGC TTCT GCTAAAA AATTTGTTCCAGCAA TERM 4344 3008469 - 3008443 - G 75 -7.4 -4.11692 | opp_overlap 3008443 CAGTTAGTTCTAAAA TGGACACCTAAA TTC TTTATGTATCCA ATTTCATTTTCAACA TERM 4345 3009079 - 3009117 + r 100 -16.4 -2.94232 | opp_overlap 3009084, overlap 3009084 CAATAGTTTAACAAA AAAAATAGACCATTTCTA ACT TAGAAATGGTCTATTTTC ATTATTTAAGACAAA TERM 4346 3009084 - 3009112 + r 100 -16.3 -4.62203 | opp_overlap 3009084, overlap 3009079 GTTTAACAAAAAAAA TAGACCATTTCTA ACT TAGAAATGGTCTA TTTTCATTATTTAAG TERM 4347 3009112 - 3009084 - R 100 -16.3 -6.09888 | opp_overlap 3009079 3009084 GTTTAACAAAAAAAA TAGACCATTTCTA ACT TAGAAATGGTCTA TTTTCATTATTTAAG pyrR 3010011 - 3009463 - | pyrimidine operon regulatory protein/uracil phosphoribosyltransferase TERM 4348 3010071 - 3010049 - R 85 -6.3 -5.56673 | ATTTACAACAAAAAA TGTCTCGAC CCTTC GCCAAGACA TTTGTATAGACTTAT TERM 4349 3010314 - 3010281 - R 93 -6.9 -5.94713 | opp_overlap 3010281 3010290 ATTTTATAAAAAAAA TCACACTGCCAAA ATATTTGA TTTAACAGTGTGA TTATAATCTTTAAAA CLD_1753 3011395 - 3010340 - | hypothetical protein TERM 4350 3011804 - 3011763 - R 100 -9.2 -6.23545 | opp_overlap 3011763 3011766 GTTAAATAAAAAAAA TAATAAGAATATATAATA ACCTAA TATTACACATTCTTATTA TTATAGCTTATACTA CLD_1752 3012504 - 3011911 - | hypothetical protein CLD_1751 3013081 - 3012662 - | MarR family transcriptional regulator CLD_1750 3015357 - 3013099 - | putative excinuclease ABC, A subunit TERM 4351 3016186 - 3016166 - g 72 -6.9 -4.10953 | AGCCAGCAAATGAAA CAGCTAAAA ATA TATTAGCTG AAAAAAGCATAATTT CLD_1749 3015901 - 3016209 + | hypothetical protein TERM 4352 3016249 - 3016200 - T 73 -8.9 -2.8786 | opp_overlap 3016200 3016204 3016212, overlap 3016212 TGAAAAAAGCATAAT TTCTGCATAAAATTAGTATGCCA TATA TGGTATACCAATTTTATACTAAA TTTTTATATGTATTA TERM 4353 3016200 - 3016249 + T 73 -4.5 -5.09685 | opp_overlap 3016200 3016212, overlap 3016204 3016212 TGAAAAAAGCATAAT TTCTGCATAAAATTAGTATGCCA TATA TGGTATACCAATTTTATACTAAA TTTTTATATGTATTA TERM 4354 3016204 - 3016245 + T 76 -9.7 -2.91457 | opp_overlap 3016200 3016212, overlap 3016200 3016212 AAAAGCATAATTTCT GCATAAAATTAGTATGCCA TATA TGGTATACCAATTTTATAC TAAATTTTTATATGT TERM 4355 3016304 - 3016275 - T 72 -5 -4.99861 | opp_overlap 3016262 3016275 TATTAATTATAAAAA GCAGAGCTATAT CTTCTT ATAATGCTCTGC TTTTTAATAATTTAT TERM 4356 3016275 - 3016304 + T 70 -5 -4.85267 | opp_overlap 3016275, overlap 3016262 TATTAATTATAAAAA GCAGAGCTATAT CTTCTT ATAATGCTCTGC TTTTTAATAATTTAT ligT 3016847 - 3016320 - | 2'-5' RNA ligase TERM 4357 3016876 - 3016928 + r 73 -6.8 -4.23781 | gap 1, opp_overlap 3016875 3016888, overlap 3016878 3016883 3016886 ACTTAAAATTAAATT TTTTTGT-TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTATATATATA TTTAATTTTAATAAA TERM 4358 3016878 - 3016926 + r 84 -9.4 -3.71107 | gap 1, opp_overlap 3016875 3016888, overlap 3016876 3016883 3016886 TTAAAATTAAATTTT TTTGT-TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTATATATA TATTTAATTTTAATA TERM 4359 3016883 - 3016920 + r 100 -17.5 -3.16931 | opp_overlap 3016875 3016888, overlap 3016878 3016876 3016886 ATTAAATTTTTTTGT TAATATTAGCTTAGTTT ATAC AAACTAAGCTAATATTA TATATATATTTAATT TERM 4360 3016886 - 3016917 + r 100 -14.8 -3.70689 | opp_overlap 3016875 3016888, overlap 3016883 3016878 3016876 AAATTTTTTTGTTAA TATTAGCTTAGTTT ATAC AAACTAAGCTAATA TTATATATATATTTA TERM 4361 3016915 - 3016888 - R 93 -13 -3.01791 | opp_overlap 3016886 3016883 3016878 3016876, overlap 3016875 ATTTTTTTGTTAATA TTAGCTTAGTTT ATAC AAACTAAGCTAA TATTATATATATATT CLD_1747 3017430 - 3017032 - | hypothetical protein CLD_1746 3019717 - 3018005 - | methyl-accepting chemotaxis protein TERM 4362 3018811 - 3018831 + g 70 -8.4 -3.08344 | ACTCCTGCATACTTC CTGCAATA TTATT TATTGCAG TATCTATAGTTTCCA TERM 4363 3020267 - 3020321 + r 100 -15.7 -4.6902 | gap 2, opp_overlap 3020267 3020274, overlap 3020274 AATCTATGATTGAAA GATAAAATCTAGTGAAGAT--GTTATT ATA AATAGCAAATCTTCACTAGATTTTATC TTTTTACAATTATAA TERM 4364 3020321 - 3020267 - R 100 -14.9 -3.69094 | gap 1, opp_overlap 3020267 3020274, overlap 3020274 AATCTATGATTGAAA GATAAAATCTAGTGAAGATGTTATTA TAAA TAGCAA-ATCTTCACTAGATTTTATC TTTTTACAATTATAA TERM 4365 3020274 - 3020314 + r 90 -8 -4.98672 | gap 2, opp_overlap 3020267 3020274, overlap 3020267 GATTGAAAGATAAAA TCTAGTGAAGAT--GTTATT ATA AATAGCAAATCTTCACTAGA TTTTATCTTTTTACA TERM 4366 3020314 - 3020274 - R 81 -7.2 -4.80455 | gap 1, opp_overlap 3020274 3020267, overlap 3020267 GATTGAAAGATAAAA TCTAGTGAAGATGTTATTA TAAA TAGCAA-ATCTTCACTAGA TTTTATCTTTTTACA CLD_1745 3020867 - 3020430 - | MutT/nudix family protein TERM 4367 3020460 - 3020485 + g 72 -4.8 -4.86133 | TCCCTCATTAGCCAG TGCATCCT TTAACCAATC AGGATGCA TTTTTACTATATCTA TERM 4368 3020956 - 3020902 - H 88 -5.2 -5.9362 | gap 2, opp_overlap 3020946, overlap 3020918 TAAAATATAAAAAAA CCCGAGAAGATAAAAATTCAGCGCAT AAAAA ACACGCTGAACCTTC-CCC-CTCGGG CATTTTATTCCAATA TERM 4369 3020942 - 3020918 - H 87 -7.2 -5.1523 | overlap 3020902 CCGAGAAGATAAAAA TTCAGCGCAT AAAAA ACACGCTGAA CCTTCCCCCTCGGGC CLD_1744 3021408 - 3021875 + | FUR family transcriptional regulator TERM 4370 3023130 - 3023146 + G 85 -8.1 -4.57209 | opp_overlap 3023129 3023127 ACAGGAACTGAATAC TTTGGAT TAA ATCCAAA TTTTATGGTTGGTCT CLD_1743 3022008 - 3024005 + | hypothetical protein TERM 4371 3024045 - 3024089 + T 100 -12.7 -4.58644 | gap 1, opp_overlap 3024036 3024045 3024052, overlap 3024052 ACTTAATATTCCAAA TAAA-AAATGTCAAGCTAAA TTTACT TTTAGCTTGACATTTATTTA TTTTACTTATTACTT TERM 4372 3024089 - 3024045 - T 95 -12.7 -3.6707 | gap 1, opp_overlap 3024045 3024052, overlap 3024036 3024052 ACTTAATATTCCAAA TAAA-AAATGTCAAGCTAAA TTTACT TTTAGCTTGACATTTATTTA TTTTACTTATTACTT TERM 4373 3024052 - 3024081 + T 100 -12.4 -4.88786 | opp_overlap 3024045 3024052, overlap 3024045 ATTCCAAATAAAAAA TGTCAAGCTAAA TTTACT TTTAGCTTGACA TTTATTTATTTTACT TERM 4374 3024081 - 3024052 - T 100 -12.4 -5.64421 | opp_overlap 3024052 3024045, overlap 3024045 ATTCCAAATAAAAAA TGTCAAGCTAAA TTTACT TTTAGCTTGACA TTTATTTATTTTACT CLD_1742 3026311 - 3024092 - | glycosy hydrolase family protein nagB 3027273 - 3026539 - | glucosamine-6-phosphate isomerase TERM 4375 3026860 - 3026838 - G 76 -10 -2.76404 | overlap 3026834 3026835 CTGATTCAAAACTTA TATTGGGTTC ATT AAACCCAATA TGGCCATTGACACCA nagA 3028498 - 3027356 - | N-acetylglucosamine-6-phosphate deacetylase TERM 4376 3028227 - 3028239 + g 82 -7.7 -4.51777 | opp_overlap 3028227 3028226 GTAGTTGGTAAAAAT GAGGT CAC ACCTC TTTTAGTTATAGTAT CLD_1739 3029393 - 3028659 - | GntR family transcriptional regulator CLD_1738 3029837 - 3029685 - | hypothetical protein TERM 4377 3030263 - 3030209 - R 84 -9.2 -3.68023 | gap 2, opp_overlap 3030218, overlap 3030218 AACCTTTAAAATTAA TTTAATGAAGCCCTGATATATTTAAA AACTA TTTAAATATATCAGGGCTT--TGAAA ATATATTCCTTAGCA TERM 4378 3030218 - 3030256 + r 100 -19.3 -3.60948 | opp_overlap 3030218 3030209 AATTAATTTAATGAA GCCCTGATATATTTAAA AACTA TTTAAATATATCAGGGC TTTGAAAATATATTC TERM 4379 3030256 - 3030218 - R 100 -19.3 -3.41636 | opp_overlap 3030218, overlap 3030209 AATTAATTTAATGAA GCCCTGATATATTTAAA AACTA TTTAAATATATCAGGGC TTTGAAAATATATTC CLD_1737 3031465 - 3030356 - | hypothetical protein TERM 4380 3032160 - 3032174 + H 75 -5.8 -5.02439 | overlap 3032165 ATGTTATTCCCCTAT TTTTAG AAT CTAAAA TTTTTATGATTCTGT CLD_1735 3032746 - 3033603 + | BglG family transcriptional antiterminator TERM 4381 3033777 - 3033737 - T 100 -12.2 -4.3467 | opp_overlap 3033737 ATTTTTATACCAAAA GGCGTAATACCAATAT CCATAAATT ATATTAGTATTACGCC TTAATAAATAAACTT TERM 4382 3033737 - 3033777 + T 85 -10 -3.1876 | opp_overlap 3033737 ATTTTTATACCAAAA GGCGTAATACCAATAT CCATAAATT ATATTAGTATTACGCC TTAATAAATAAACTT ptbA 3034302 - 3033823 - | PTS system, glucose subfamily, IIA component TERM 4383 3034372 - 3034397 + H 73 -9.1 -2.92667 | opp_overlap 3034372, overlap 3034369 TTCAAATAAAAAAAA GGCATAAGTTA TCCC TAACTCATGCC TGATTTAACAGTTAC TERM 4384 3034397 - 3034372 - H 100 -11.3 -6.23545 | opp_overlap 3034372 3034369 TTCAAATAAAAAAAA GGCATAAGTTA TCCC TAACTCATGCC TGATTTAACAGTTAC TERM 4385 3034534 - 3034483 - H 95 -10.6 -4.08767 | opp_overlap 3034486, overlap 3034486 3034490 CTTATTTCTTTAAAA TTATTAAGTATAATCTATTGACAT TTTT ATTTCAATAGATTATACTTAATTT ATCAGCGTGCAACCA TERM 4386 3034486 - 3034531 + H 100 -16.7 -3.87815 | opp_overlap 3034483 3034486 3034490 ATTTCTTTAAAATTA TTAAGTATAATCTATTGACAT TTTT ATTTCAATAGATTATACTTAA TTTATCAGCGTGCAA TERM 4387 3034531 - 3034486 - H 100 -16.7 -3.08211 | opp_overlap 3034486, overlap 3034483 3034490 ATTTCTTTAAAATTA TTAAGTATAATCTATTGACAT TTTT ATTTCAATAGATTATACTTAA TTTATCAGCGTGCAA TERM 4388 3034527 - 3034490 - H 100 -13.1 -3.37533 | opp_overlap 3034486, overlap 3034486 3034483 CTTTAAAATTATTAA GTATAATCTATTGACAT TTTT ATTTCAATAGATTATAC TTAATTTATCAGCGT TERM 4389 3034563 - 3034591 + H 100 -9.7 -5.80364 | opp_overlap 3034563 CAACGTTGGGCAAAA GCTGAAAAGGT TATCTAT ACCTTTTCGGC TTTTTTTGTTGCAAT TERM 4390 3034591 - 3034563 - H 77 -7.5 -4.08692 | opp_overlap 3034563 CAACGTTGGGCAAAA GCTGAAAAGGT TATCTAT ACCTTTTCGGC TTTTTTTGTTGCAAT TERM 4391 3034674 - 3034651 - H 85 -10.4 -3.02144 | opp_overlap 3034639 CTACCTGCTCTAATA CTCCCATCTT CTTA AAAATGGGAG TAAAGAGCGGCTATG TERM 4392 3034722 - 3034752 + H 85 -9.8 -3.16288 | opp_overlap 3034721 3034718 3034722 3034724, overlap 3034721 CCCCTAAAGGATAAC GATTTCTAAGGAGT AAA GCTCCTAAGAAGTC TGTTAATAAGCTTTA nagE 3034998 - 3036440 + | PTS system, N-acetylglucosamine-specific, IIBC component TERM 4393 3036522 - 3036477 - f 88 -12.3 -2.6914 | opp_overlap 3036478 3036483, overlap 3036454 3036483 TATTCCTTATATAAC TTAAAAGCCTACAAATATA TGAATATT TATATTTGTAGGCTTTTAT TTATAATTATTTATT TERM 4394 3036478 - 3036521 + F 100 -15.8 -4.18441 | opp_overlap 3036454 3036477 3036483, overlap 3036483 ATTCCTTATATAACT TAAAAGCCTACAAATATA TGAATATT TATATTTGTAGGCTTTTA TTTATAATTATTTAT TERM 4395 3036483 - 3036516 + F 100 -11.3 -5.04733 | opp_overlap 3036483 3036477, overlap 3036478 TTATATAACTTAAAA GCCTACAAATATA TGAATATT TATATTTGTAGGC TTTTATTTATAATTA TERM 4396 3036516 - 3036483 - f 100 -11.3 -4.34267 | opp_overlap 3036478 3036483, overlap 3036477 TTATATAACTTAAAA GCCTACAAATATA TGAATATT TATATTTGTAGGC TTTTATTTATAATTA TERM 4397 3038100 - 3038110 + G 70 -5.4 -4.62783 | CAGGGCTTATAGTTA TGTC TAT GACA TTTTTCCAATCAATA TERM 4398 3038315 - 3038303 - g 70 -3.5 -5.16572 | opp_overlap 3038303 ATTGAATTTAAAAAA TTATA TGA TATAA ATTCTTCAGAAAATC CLD_1732 3036983 - 3038353 + | MATE efflux family protein TERM 4399 3038375 - 3038415 + T 95 -9.3 -4.76041 | opp_overlap 3038384, overlap 3038379 3038384 TGAAGAATATATATT TAGATAAAAGGTGACAT TTATGCT ATGTCACCTTTTATTCA TTTTTAGTCAATATC TERM 4400 3038379 - 3038411 + T 100 -12.3 -3.84901 | opp_overlap 3038384, overlap 3038375 3038384 GAATATATATTTAGA TAAAAGGTGACAT TTATGCT ATGTCACCTTTTA TTCATTTTTAGTCAA TERM 4401 3038406 - 3038384 - T 83 -7.8 -4.56358 | opp_overlap 3038379 3038375 3038384 TATATTTAGATAAAA GGTGACAT TTATGCT ATGTCACC TTTTATTCATTTTTA TERM 4402 3038384 - 3038406 + T 90 -7.8 -4.93177 | opp_overlap 3038384, overlap 3038379 3038375 TATATTTAGATAAAA GGTGACAT TTATGCT ATGTCACC TTTTATTCATTTTTA CLD_1731 3039408 - 3038488 - | ABC transporter system permease involved in Fe-S cluster assembly CLD_1730 3040129 - 3039410 - | ABC transporter, ATP-binding protein CLD_1729 3040821 - 3040219 - | hypothetical protein CLD_1728 3041367 - 3041849 + | ferric uptake regulation protein TERM 4403 3042083 - 3042031 - T 100 -18.2 -5.99154 | opp_overlap 3042031 CATTAAATAAAAAAA TAAGCGAAAATAAAAGGTGACACA TATAC TATGCCACCTTTTATTTTTGCTTA TTTTTATTTATATTA TERM 4404 3042031 - 3042083 + T 100 -16 -5.4659 | opp_overlap 3042031 CATTAAATAAAAAAA TAAGCGAAAATAAAAGGTGACACA TATAC TATGCCACCTTTTATTTTTGCTTA TTTTTATTTATATTA CLD_1727 3043574 - 3042180 - | MATE efflux family protein TERM 4405 3042377 - 3042361 - G 81 -8.1 -4.07089 | opp_overlap 3042360 AATATAAATATTAAA GGTATAT AAA ATATACC CTGTCTAGAAATAGA TERM 4406 3042414 - 3042402 - G 70 -5.5 -4.33674 | opp_overlap 3042402, overlap 3042412 AATAGATAATATAAA GGCTC CTA AAGCC TTACCTAAAGCTTGA TERM 4407 3042841 - 3042830 - G 70 -4.4 -4.87665 | opp_overlap 3042830, overlap 3042832 CTTGAGTTACAAAAA TAGG AATA CCTA TCTTAAGTATTTCAA TERM 4408 3043788 - 3043754 - R 81 -7.3 -4.7889 | gap 1 ACAAATATTCAAAAA GGACCAACTCACCAGA ATTA TCCA-TGAATTGGTCC TAAATTTATATTTTT CLD_1726 3045009 - 3043810 - | metallo-beta-lactamase family protein/flavodoxin CLD_1725 3046975 - 3045068 - | acyl-CoA dehydrogenase family protein/electron transfer protein TERM 4409 3047237 - 3047219 - R 100 -11.8 -6.23317 | AGAAAAATAAAAAAA GAAGGTCT TTA AGACCTTC AGGCTGTTGATAAAT TERM 4410 3047300 - 3047329 + r 100 -10.1 -4.4648 | AATAAAAATATTTGA TACCGGCAATTAC TTTT GTAGTTGGCGGTA TTTTATGCTACAGAT CLD_1724 3048075 - 3047332 - | IS3 family transposase CLD_1723 3048391 - 3049107 + | CoA-transferase, A subunit CLD_1722 3049116 - 3049772 + | CoA-transferase, B subunit TERM 4411 3049933 - 3049962 + T 100 -10.1 -4.4648 | AATAAAAATATTTGA TACCGGCAATTAC TTTT GTAGTTGGCGGTA TTTTATGCTACAGAT TERM 4412 3050219 - 3050238 + T 100 -13.6 -3.63073 | opp_overlap 3050219 TGAAGCGTTATAAAA CCCCATGC ATTT GCATGGGG TTCTTGAACAATCTG TERM 4413 3050238 - 3050219 - T 100 -13.6 -4.4017 | opp_overlap 3050219 TGAAGCGTTATAAAA CCCCATGC ATTT GCATGGGG TTCTTGAACAATCTG CLD_1721 3050923 - 3050354 - | hypothetical protein TERM 4414 3051100 - 3051075 - R 73 -2.6 -5.7946 | opp_overlap 3051068 TGGTGAATAAAAAAA GAAAGCCTAT AAATAA ATACGCCTTC TTTTTTGTATATTCT CLD_1720 3051630 - 3051142 - | xanthine dehydrogenase family protein, iron-sulfur binding protein TERM 4415 3051261 - 3051276 + g 73 -9 -3.10344 | overlap 3051263 GTTCTATTACATGGT CATCCG CATC CGGATG TATATTAGCTAAGGC CLD_1719 3052465 - 3051635 - | xanthine dehydrogenase family protein, FAD-binding subunit CLD_1718 3054792 - 3052462 - | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 4416 3055159 - 3055109 - H 78 -9.5 -3.09933 | gap 1, opp_overlap 3055109, overlap 3055111 TGGTAATGCAGGCAA GACCAAAATAAAGATGGATTTC TTTTATGG GAAATACAT-TTTATTTTGGTC TTTTTTTATTTTTTA TERM 4417 3055109 - 3055159 + H 100 -10.9 -6.28401 | gap 1, opp_overlap 3055109 3055111 TGGTAATGCAGGCAA GACCAAAATAAAGATGGATTTCTT TTAT GGGAAATACAT-TTTATTTTGGTC TTTTTTTATTTTTTA TERM 4418 3056357 - 3056335 - g 83 -3.4 -5.79588 | TTAAAACTAAAAAAA CCATTAATAG CGG CTATGATTGG TGGTGGATGTGCAGG CLD_1717 3055192 - 3057063 + | PTS system, beta-glucoside-specific family, IIABC subunit CLD_1716 3057120 - 3058532 + | glycosy hydrolase family protein CLD_1715 3058571 - 3059404 + | transcription antiterminator TERM 4419 3059505 - 3059552 + T 86 -8.7 -4.53765 | opp_overlap 3059506 3059508, overlap 3059506 3059513 GAATTGTAAAATAAA ATCTAGTAGGATGGAGAATGT AGTATC ATATTCTCCATCCTATTAAAA TTTTCTAATATATAT TERM 4420 3059551 - 3059506 - T 100 -10.7 -5.10163 | opp_overlap 3059505 3059506 3059513, overlap 3059508 AATTGTAAAATAAAA TCTAGTAGGATGGAGAATGTA GTAT CATATTCTCCATCCTATTAAA ATTTTCTAATATATA TERM 4421 3059506 - 3059551 + T 95 -12.2 -3.31175 | opp_overlap 3059506 3059508, overlap 3059505 3059513 AATTGTAAAATAAAA TCTAGTAGGATGGAGAATGT AGTATC ATATTCTCCATCCTATTAAA ATTTTCTAATATATA TERM 4422 3059549 - 3059508 - T 85 -11.1 -2.77598 | opp_overlap 3059506 3059505 3059513, overlap 3059506 TTGTAAAATAAAATC TAGTAGGATGGAGAATGTA GTAT CATATTCTCCATCCTATTA AAATTTTCTAATATA TERM 4423 3059513 - 3059544 + T 93 -12.5 -3.16437 | opp_overlap 3059508 3059506, overlap 3059506 3059505 AAATAAAATCTAGTA GGATGGAGAATGT AGTATC ATATTCTCCATCC TATTAAAATTTTCTA CLD_1714 3060945 - 3059728 - | monovalent cation:proton antiporter-2 (CPA2) family protein CLD_1713 3062622 - 3061951 - | HAD family hydrolase TERM 4424 3062291 - 3062306 + g 71 -4.8 -4.6951 | GAAGCAGTAGCGATT GTAAAA GGAA TTTTAC TTTCTTTTAAATAAT CLD_1712 3063356 - 3062826 - | prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase CLD_1711 3063644 - 3063495 - | hypothetical protein TERM 4425 3063601 - 3063612 + g 78 -3 -5.626 | AAGCCATCTTGATAT TCTA GGGC TAGA TTTTTTTCTAAAATA TERM 4426 3063791 - 3063766 - R 75 -5.5 -5.03994 | opp_overlap 3063766 TTTTATACATAAAAA GAAAGGTTCTA AAAT TAAGACCTTTC TTTCTCAGTGTCAAG TERM 4427 3063844 - 3063834 - R 80 -2.6 -6.15536 | AAGCAACAAAAAAAA TTTT CCT AAAA GAATATAATACAAAA TERM 4428 3063967 - 3063941 - R 93 -8.8 -4.87291 | CATCTTAACCAAAAA GTCCCTCAAA TATAAAG TCTGAGGGAC CTACAATACTCTTTA CLD_1710 3065092 - 3064058 - | florfenicol/chloramphenicol resistance protein CLD_1709 3066733 - 3065255 - | drug resistance ABC transporter ATP-binding protein TERM 4429 3066335 - 3066320 - G 72 -7.6 -3.56142 | CTCATCAATAAGCAA GAAGGA GCTC TCCTTC AAAAACATAGCAGCC TERM 4430 3066798 - 3066767 - R 77 -7.5 -4.06786 | opp_overlap 3066767 3066770, overlap 3066770 ATTTAATAGTATAAA TAACAAAGTCG GAACAATAGG CGACTTTGTTA TTACTCCATATAAGT TERM 4431 3066956 - 3066920 - R 100 -9.6 -5.28778 | overlap 3066923 ATTATTTATAAAAAA TAAGAGCCGCAAGAAT TAATT ATTCTTACAGCTCATA GATATACGTAGTTAA TERM 4432 3066953 - 3066923 - R 100 -11.3 -4.73105 | overlap 3066920 ATTTATAAAAAATAA GAGCCGCAAGAAT TAATT ATTCTTACAGCTC ATAGATATACGTAGT TERM 4433 3067270 - 3067258 - R 72 -4.1 -5.39721 | TGAGGATACAAAAAA GATGT CGT ACACC TCTGGTATCACCTTG CLD_1708 3068489 - 3067692 - | hypothetical protein CLD_1707 3068976 - 3070391 + | catalase TERM 4434 3070451 - 3070470 + T 70 -7.2 -3.74626 | gap 1 CTTGGTTTGGATATT TTCTCACGC GTT GCG-GAGAA TTTCAATCCTTTCAT TERM 4435 3070613 - 3070633 + T 82 -5.5 -5.47431 | opp_overlap 3070613 3070612, overlap 3070606 TTGATATTGAAGAAT GTATAGTTT CGC AAACTTTAC TTTTTTCTGTATTCA CLD_1706 3071277 - 3071128 - | hypothetical protein CLD_1705 3072768 - 3072349 - | acetyltransferase CLD_1704 3073326 - 3072877 - | EbsC protein CLD_1703 3073331 - 3073465 + | hypothetical protein TERM 4436 3073466 - 3073506 + T 100 -18.7 -4.30719 | opp_overlap 3073455 3073466 3073469 GTAAGTCATTTATAA TAACTATCATTTTTAGTGC CTG GCACCAAAAATGATAGTTA TTTCTTATAAAGACC TERM 4437 3073506 - 3073466 - T 100 -20.9 -3.3785 | opp_overlap 3073466, overlap 3073455 3073469 GTAAGTCATTTATAA TAACTATCATTTTTAGTGC CTG GCACCAAAAATGATAGTTA TTTCTTATAAAGACC TERM 4438 3073503 - 3073469 - T 100 -18.2 -3.82378 | opp_overlap 3073466, overlap 3073466 AGTCATTTATAATAA CTATCATTTTTAGTGC CTG GCACCAAAAATGATAG TTATTTCTTATAAAG CLD_1702 3074856 - 3073504 - | mate efflux family protein TERM 4439 3075266 - 3075247 - R 100 -8.6 -5.93252 | overlap 3075256 GGGAAAAATAAAAAA CCACAAGT ATAA ACCTGTGG TTAAAGTACGGCATA CLD_1701 3076346 - 3075306 - | AraC family transcription regulator TERM 4440 3075612 - 3075628 + g 76 -3.7 -5.38249 | CTGTTCAAGCAGGAT TTGAGGA ATT TCCTTGA TTTTTTGTAATTCAT TERM 4441 3076099 - 3076087 - G 70 -6.3 -4.14243 | TATTCGATTTCAAAA TATCC CCC GGATA AATCAAACACTGTTT TERM 4442 3076591 - 3076601 + H 81 -5.4 -5.37593 | overlap 3076580 ACTGCCCACCTAGTG GCTT GGT AAGC TTTTTTCATTTCAGC CLD_1700 3076632 - 3077000 + | putative phage membrane protein CLD_1699 3077437 - 3077045 - | conjugative transposon protein TERM 4443 3077185 - 3077172 - G 72 -6.7 -4.11216 | opp_overlap 3077172 TCTGCACCTTGAAAA GTAGC ATTA GCTAC TGTATCTGCCACTGG CLD_1698 3077772 - 3077458 - | conjugative transposon protein TERM 4444 3077946 - 3077927 - R 91 -7.2 -5.60689 | opp_overlap 3077927 3077930 TGATATAAGAAAAAA GACGTTCA TTTC TGAACATC TTTTAAAGTAATTCA CLD_1697 3079068 - 3077977 - | FRG domain-containing protein TERM 4445 3078663 - 3078675 + g 76 -6.3 -4.60487 | GAATGAATATGCTGT GATAC GAA GTATC TTTTTCAAAATCGTC CLD_1696 3079952 - 3079092 - | hypothetical protein TERM 4446 3080234 - 3080211 - R 79 -7.4 -4.60797 | TCTTGACACAGAAAA GGAGTACCAT TTAT ACGGCACCCC TTAAAATCTAAATCT CLD_1695 3080528 - 3080376 - | hypothetical protein CLD_1694 3080782 - 3081417 + | transcriptional regulator TERM 4447 3081433 - 3081421 - f 77 -3.4 -5.75538 | opp_overlap 3081421 TGGAAAAAATAAAAA TTCC TTTGT GGAA TTTTACACATTTAAT TERM 4448 3082387 - 3082377 - g 70 -5.4 -4.68512 | GCAGAACAAAAAGAA GCTA TGT TAGC AAAAGCTGAAGAAAA CLD_1693 3081528 - 3082736 + | dipeptidyl aminopeptidase/acylaminoacyl peptidase TERM 4449 3082805 - 3082771 - f 93 -10.2 -4.1552 | opp_overlap 3082762 TAGTTTTTTAACAAA GCTTTCTATGTTAAAT TTA ATTTTTCATAGAAAGC TCAATAATATTAAAT CLD_1692 3082838 - 3083293 + | hypothetical protein CLD_1691 3084128 - 3083802 - | hypothetical protein CLD_1690 3084944 - 3084321 - | hypothetical protein CLD_1689 3085212 - 3085081 - | hypothetical protein CLD_1688 3086094 - 3085270 - | hydrolase family protein CLD_1687 3086343 - 3086224 - | hypothetical protein CLD_1686 3086481 - 3086359 - | putative acetyltransferase TERM 4450 3086744 - 3086720 - g 76 -2.9 -5.5353 | overlap 3086722 CAGAGGAAGAAAAAA TATCCAAATAT CAT ATATTAGGAAA TTACAGACATATTAG TERM 4451 3086742 - 3086722 - g 71 -5.5 -4.39002 | overlap 3086720 GAGGAAGAAAAAATA TCCAAATAT CAT ATATTAGGA AATTACAGACATATT CLD_1685 3086650 - 3086916 + | MerR family transcriptional regulator CLD_1684 3087997 - 3087620 - | putative transcriptional regulator TERM 4452 3088069 - 3088122 + r 85 -10 -3.24232 | opp_overlap 3088069 3088070, overlap 3088067 3088070 TTCACTATCTTCAAA TGGAATAGTTATACAATAAACTAA CATTCT TTACCTTATTGTATAACTATTCCC TATATTTCACAACAC TERM 4453 3088122 - 3088069 - R 95 -12.2 -3.58343 | opp_overlap 3088069 3088067 3088070, overlap 3088070 TTCACTATCTTCAAA TGGAATAGTTATACAATAAACTAA CATTCT TTACCTTATTGTATAACTATTCCC TATATTTCACAACAC TERM 4454 3088121 - 3088070 - R 100 -15.7 -2.74792 | opp_overlap 3088069 3088067 3088070, overlap 3088069 TCACTATCTTCAAAT GGAATAGTTATACAATAAACTAA CATTCT TTACCTTATTGTATAACTATTCC CTATATTTCACAACA TERM 4455 3088070 - 3088121 + r 91 -13.5 -2.54325 | opp_overlap 3088070 3088069, overlap 3088069 3088067 TCACTATCTTCAAAT GGAATAGTTATACAATAAACTAA CATTCT TTACCTTATTGTATAACTATTCC CTATATTTCACAACA TERM 4456 3088191 - 3088213 + r 95 -9.3 -4.7497 | opp_overlap 3088191 TTTAACAGTAAAAAA GGTACTATT CTTTT AATAGTACC TTTTTAATCACTAAC TERM 4457 3088213 - 3088191 - R 100 -9.3 -5.27779 | opp_overlap 3088191 TTTAACAGTAAAAAA GGTACTATT CTTTT AATAGTACC TTTTTAATCACTAAC rumA 3089741 - 3088365 - | 23S rRNA (uracil-5-)-methyltransferase RumA TERM 4458 3088832 - 3088844 + g 72 -4.9 -4.92783 | CTAAGAAGTCTTTTA CTATA CTA TATAG TTTTTCTGCTCCCTT TERM 4459 3090005 - 3089966 - R 70 -5.2 -4.8048 | opp_overlap 3089969, overlap 3089969 TTTTCATATTAAAAA CAATAATTAAGAGCCCCT TTAT AGATACTCTTAATTATTT ATCCATTCTATTTAT TERM 4460 3090002 - 3089969 - R 75 -6.9 -4.50988 | opp_overlap 3089969, overlap 3089966 TCATATTAAAAACAA TAATTAAGAGCCCCT TTAT AGATACTCTTAATTA TTTATCCATTCTATT CLD_1682 3090459 - 3090013 - | hypothetical protein TERM 4461 3090558 - 3090570 + H 73 -3.5 -5.52384 | TAAATTATATGTTTT TAATA AAT TATTA TTTTTTTAATAAAAA CLD_1681 3090790 - 3092649 + | sulfatase family protein CLD_1680 3092675 - 3093427 + | hypothetical protein TERM 4462 3093569 - 3093626 + T 70 -3 -5.49579 | gap 1, opp_overlap 3093571, overlap 3093571 AATTAATGAAGATTA AAGCAGATATAAGCTAAGATGCAAT AAATTTAAA ATCGC-TCTTAACTTGTATCTGCTC TTTTATTTTTTATCC TERM 4463 3093624 - 3093571 - T 75 -7.8 -3.97209 | gap 1, opp_overlap 3093571 3093569 TTAATGAAGATTAAA GCAGATATAAGCTAAGATGCAAT AAATTTAAA ATCGC-TCTTAACTTGTATCTGC TCTTTTATTTTTTAT TERM 4464 3093802 - 3093771 - T 100 -17.4 -3.62522 | opp_overlap 3093763, overlap 3093790 GAATTCTGTTAATAA GCTTCAGTGGGAGT AAAA ACTCCCTCTGAAGC CAAGAACTCTGTTTA ribH 3094299 - 3093835 - | 6,7-dimethyl-8-ribityllumazine synthase ribAB 3095536 - 3094331 - | bifunctional riboflavin biosynthesis protein RibAB TERM 4465 3095003 - 3095022 + g 73 -8.6 -3.11687 | opp_overlap 3095002 3095003 TACAAATTCCATAAG CTGTGGCA CTCT TGCCATAG TTCCGTCCTCATTCA TERM 4466 3095334 - 3095344 + g 78 -4 -5.40474 | CATATTTCTAATTCC TCTA ATC TAGA TTTTTTTACGGGAGT ribE 3096530 - 3095844 - | riboflavin synthase, alpha subunit ribD 3097608 - 3096511 - | riboflavin biosynthesis protein RibD TERM 4467 3097789 - 3097768 - R 100 -9.5 -5.88197 | opp_overlap 3097768 TTAAATATAAAAAAA TCTCTAGAG TTTC CTCCAGAGA TTTATATACGAAACA TERM 4468 3097768 - 3097789 + r 73 -7.3 -4.03234 | opp_overlap 3097768 TTAAATATAAAAAAA TCTCTAGAG TTTC CTCCAGAGA TTTATATACGAAACA pepD 3099448 - 3098012 - | aminoacyl-histidine dipeptidase TERM 4469 3099772 - 3099757 - H 79 -9 -3.53012 | opp_overlap 3099750 GTTCTTGGCTTCAAA GGGAGT TTTT ACTCCC ACTAAATCTTATTAA TERM 4470 3099817 - 3099793 - H 100 -10.1 -4.71828 | opp_overlap 3099792 ATCTTATTAACAAAA TTCTCAGGAGT TTT ACTCCTTAGAA GTCGTTATCCTTTAG CLD_1674 3100010 - 3100903 + | metallo-beta-lactamase family protein mgtA 3103739 - 3101094 - | magnesium-translocating P-type ATPase TERM 4471 3102903 - 3102885 - G 77 -4.6 -5.28778 | overlap 3102887 3102888 ACCATTTATAAAAAA TACTATGG GAA CCATAACA AACATAAATTTTATA TERM 4472 3104101 - 3104074 - R 93 -7.1 -5.80951 | opp_overlap 3104074 ATTCAAAATAAAAAA CCTTCGTCA AACTTAAACA TGACGAAGG TATATTAACAACACT TERM 4473 3104324 - 3104341 + r 73 -4.3 -5.26316 | TCAAGAAAATTCATA TAAATTT TTTA AAATTTA TTTTTTATCCGATGA TERM 4474 3104471 - 3104423 - R 72 -8.9 -2.57211 | opp_overlap 3104423 3104422 3104426, overlap 3104422 3104425 ATGTCCCTGGATAAC GATTTCTAAGCTTTAGTGGGAGT AAA ACTCCCTCTGAAACCAAGAACTC TGTTTATCCGATGAC CLD_1672 3105016 - 3104612 - | hypothetical protein TERM 4475 3105082 - 3105043 - R 71 -7 -3.89695 | gap 1, opp_overlap 3105038 3105031 3105043 3105045, overlap 3105038 3105072 CCCTTATAAATAGAA TATCTATAATATTATT-AT ATC ATAAATAATATTATAAATA ATTTGTAAATAATTG CLD_1671 3106204 - 3105119 - | spore germination protein TERM 4476 3107701 - 3107686 - g 75 -4.8 -5.11613 | AGATGATTTAAAAAA TATATC CCAT GATATA CTAGGCAATAATAAA CLD_1670 3106322 - 3107752 + | GerA family spore germination protein CLD_1669 3107830 - 3108924 + | spore germination protein TERM 4477 3108925 - 3108937 + T 70 -3.4 -5.37043 | GATATTATATCATAG GGTT AACAC AACC TTTTTTATATAAAGT purD 3110322 - 3109081 - | phosphoribosylamine--glycine ligase TERM 4478 3109337 - 3109357 + g 76 -6.9 -4.42513 | opp_overlap 3109337 GCTGCTATAACACAA GTGGAATAA GCT TTTTTCCAC TTTATGTTTGTACTT purH 3111970 - 3110471 - | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 4479 3112069 - 3112027 - R 81 -10.8 -2.66274 | opp_overlap 3112027, overlap 3112026 TCTGTCATAAGTAAC TGCCACCAATATACCTTCTT TCA AAGAAAACATATAAGTGGCA CTATTTCAATTTACA purN 3112801 - 3112184 - | phosphoribosylglycinamide formyltransferase purM 3113923 - 3112928 - | phosphoribosylformylglycinamidine cyclo-ligase purF 3115543 - 3114095 - | amidophosphoribosyltransferase purC 3116339 - 3115635 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 4480 3116075 - 3116090 + g 72 -4 -5.0133 | overlap 3116073 TAACTATAACTTCTA GTGGAA CTAT TTCTAC TTTTTTGCAAAGCTG purE 3116818 - 3116339 - | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 4481 3116890 - 3116854 - R 75 -3.8 -5.51046 | gap 1 TAAATATATAAAAAA TTCCGC-TAAGATTTCT ATGG AGAATCCTAAAGCGGAA CTTAAGCGCACTGCA TERM 4482 3117335 - 3117302 - R 100 -11.7 -4.7657 | GAAAAACGTGAAAAA CCGGTGGCAAAGCTA AAAT TAGCATCTCCACCGG GTAAAACTTTATGAT CLD_1661 3120005 - 3117450 - | xanthine dehydrogenase family protein, molybdopterin-binding subunit TERM 4483 3118651 - 3118637 - G 70 -8.6 -2.59298 | opp_overlap 3118637, overlap 3118634 TATCTGATATAATAT CTGCTT TAA AAGCAG TTAAATTTCCTTTTT TERM 4484 3118637 - 3118651 + g 76 -8.6 -3.38096 | opp_overlap 3118637 3118634 TATCTGATATAATAT CTGCTT TAA AAGCAG TTAAATTTCCTTTTT TERM 4485 3119575 - 3119588 + g 83 -6.7 -5.093 | CTAAATGCCTCTGCT GCCAT TTCA ATGGC TTTTATTATTTTCAC TERM 4486 3120282 - 3120235 - R 73 -2.2 -5.67063 | gap 1, opp_overlap 3120237 3120242, overlap 3120242 3120250 TTTATGATAAAAAAA TGTATAATGAAGAAATGGAGATA AAT TTTCTCCATTTCATCATT-TATT TTTATTATTTAAAAT TERM 4487 3120237 - 3120280 + r 100 -9.2 -5.38549 | gap 1, opp_overlap 3120235 3120242 3120250, overlap 3120242 TATGATAAAAAAATG TATAATGAAGAAATGGAGATA AAT TTTCTCCATTTCATCATT-TA TTTTTATTATTTAAA TERM 4488 3120276 - 3120242 - R 95 -11.6 -3.6185 | opp_overlap 3120242 3120237, overlap 3120235 3120250 TAAAAAAATGTATAA TGAAGAAATGGAGATA AAT TTTCTCCATTTCATCA TTTATTTTTATTATT TERM 4489 3120242 - 3120276 + r 100 -11.6 -5.11254 | opp_overlap 3120235 3120242 3120250, overlap 3120237 TAAAAAAATGTATAA TGAAGAAATGGAGATA AAT TTTCTCCATTTCATCA TTTATTTTTATTATT TERM 4490 3120268 - 3120250 - R 70 -6 -4.36596 | opp_overlap 3120242 3120237, overlap 3120242 3120235 TGTATAATGAAGAAA TGGAGATA AAT TTTCTCCA TTTCATCATTTATTT CLD_1660 3121597 - 3120380 - | M20/M25/M40 family peptidase CLD_1659 3122951 - 3121623 - | amidohydrolase family protein TERM 4491 3121676 - 3121697 + g 78 -6.7 -4.68545 | overlap 3121677 TTCTAGCCATAACTC TTTCTTCAT CAAC ATGAAGAAG TTTTCTGTCTTCCAT TERM 4492 3121677 - 3121696 + g 71 -8 -3.40043 | overlap 3121676 TCTAGCCATAACTCT TTCTTCAT CAAC ATGAAGAA GTTTTCTGTCTTCCA CLD_1658 3125999 - 3122982 - | pyridine nucleotide-disulfide family oxidoreductase CLD_1657 3127230 - 3126034 - | aspartate/ornithine carbamoyltransferase family protein TERM 4493 3127453 - 3127396 - R 100 -17.1 -2.59069 | opp_overlap 3127405 3127405 3127418, overlap 3127405 3127418 3127425 ATTTAGAAAAATTAC CTCAATAAATTTATTATTAAAATGATA AATT TATCATTTTAATAATAAATTTACTAAA TGTTATAAATATTCA TERM 4494 3127405 - 3127444 + r 100 -15.6 -3.79882 | opp_overlap 3127396 3127405 3127418 3127425, overlap 3127405 3127418 AATTACCTCAATAAA TTTATTATTAAAATGATA AATT TATCATTTTAATAATAAA TTTACTAAATGTTAT TERM 4495 3127444 - 3127405 - R 100 -15.6 -4.19336 | opp_overlap 3127405 3127405 3127418, overlap 3127396 3127418 3127425 AATTACCTCAATAAA TTTATTATTAAAATGATA AATT TATCATTTTAATAATAAA TTTACTAAATGTTAT TERM 4496 3127549 - 3127524 - R 95 -7 -5.9003 | opp_overlap 3127524 AAATTAAGAAAAAAA GAACCTTTTG AATCTA CAAAAAGTTC TTTATAATCACAAAA hydA 3128966 - 3127572 - | dihydropyrimidinase CLD_1655 3130422 - 3129016 - | xanthine/uracil permease family protein TERM 4497 3129174 - 3129192 + g 71 -7.5 -3.83205 | opp_overlap 3129171 3129174 3129173 CGCTGTGGAAAAGAG TTTCCAC CCATT GTGGAAA TTTACTATAAAAAGT TERM 4498 3130278 - 3130260 - G 71 -7.5 -3.76888 | opp_overlap 3130259 3130260, overlap 3130258 CATTTATAAGAAATA TTGTCTG TTCTG CAGACAA ATTTAGTGCACCACC dpaL 3131655 - 3130444 - | diaminopropionate ammonia-lyase TERM 4499 3131333 - 3131364 + g 93 -11.9 -3.07227 | opp_overlap 3131339, overlap 3131327 TTTTTTCTTGCATCT TCAGAATTAAGTT TTTCAT AACTTAATTCTGA TATATCCTTTCCTAG TERM 4500 3131828 - 3131804 - R 73 -3 -5.73563 | opp_overlap 3131804 ATCAAATGAAAAAAA TACAAAGT CTATTATCT ACTTTGTA TCTTTTATTATTAAA TERM 4501 3131951 - 3131935 - R 70 -4.5 -4.97461 | opp_overlap 3131935 3131936, overlap 3131928 AATAAATATTAAAAA CTTATCA CTT TGATAAA TTTTTTATCCCCTCT CLD_1653 3133702 - 3131939 - | sigma-54 dependent transcriptional regulator TERM 4502 3133092 - 3133103 + g 71 -3 -5.19251 | opp_overlap 3133092 TATTCACTAGTAGAA GATA TTGT TATC TTTTTATTCGTATTA TERM 4503 3133818 - 3133832 + H 80 -2.9 -6.06529 | overlap 3133810 TTTTAACTATGCTAT TTATC AATAG GATAA TTTTTTTTATATATC TERM 4504 3133944 - 3133980 + H 72 -7.7 -3.52902 | opp_overlap 3133942 3133943 3133946, overlap 3133973 ATACATGCTATAATT TATTTTAAAAATACT ATGCCTC AGTATTTTTAAGATA TCTATTTTAATTTAT CLD_1652 3134065 - 3134802 + | hypothetical protein TERM 4505 3135038 - 3135027 - g 75 -5.8 -4.78848 | GTTTTAAATACAAAA GCCT ATAA AGGC CAAAGTCAATCTATA CLD_1651 3134817 - 3135431 + | hypothetical protein CLD_1650 3135412 - 3136260 + | hypothetical protein CLD_1649 3136242 - 3137051 + | putative xanthine dehydrogenase accessory factor CLD_1648 3137077 - 3137622 + | hypothetical protein CLD_1647 3137619 - 3138587 + | iron chelate ABC transporter permease protein CLD_1646 3138584 - 3139378 + | iron chelate ABC transporter ATP-binding protein TERM 4506 3139521 - 3139492 - f 95 -11.5 -3.56568 | overlap 3139510 TAACCATTTCCTAAA CTTCAGTGGAAGT AAAA ACTCCCTCTGAAG CCAAGAACTCTGTTT TERM 4507 3140091 - 3140070 - g 85 -3.7 -5.68438 | opp_overlap 3140078, overlap 3140078 TTATTAAATAAAAAA GAGAAAGCT AAAG AACTTGCTC TTTATTGTGAAAAAA CLD_1645 3139557 - 3140615 + | putative iron chelate uptake ABC transporter, solute-binding protein TERM 4508 3140652 - 3140624 - f 90 -6.1 -5.85425 | opp_overlap 3140624 3140625, overlap 3140625 TAAATAAATAAAAAA TCCTAGTTCATTT AAT AAATGAATTAGGG TTTTTCTACTTTTTA TERM 4509 3140624 - 3140652 + F 100 -10.5 -5.1286 | opp_overlap 3140624 3140625, overlap 3140625 TAAATAAATAAAAAA TCCTAGTTCATTT AAT AAATGAATTAGGG TTTTTCTACTTTTTA TERM 4510 3140651 - 3140625 - f 86 -9.6 -4.07595 | opp_overlap 3140624 3140625, overlap 3140624 AAATAAATAAAAAAT CCTAGTTCATTT AAT AAATGAATTAGG GTTTTTCTACTTTTT TERM 4511 3140625 - 3140651 + F 95 -11.8 -3.65276 | opp_overlap 3140625 3140624, overlap 3140624 AAATAAATAAAAAAT CCTAGTTCATTT AAT AAATGAATTAGG GTTTTTCTACTTTTT CLD_1644 3140753 - 3141085 + | hypothetical protein CLD_1643 3141213 - 3141785 + | GDSL family lipase/acylhydrolase CLD_1642 3142492 - 3141899 - | hypothetical protein TERM 4512 3142096 - 3142111 + g 71 -4.8 -4.76963 | AATTATTATCTTCCA TTTTCT TTTT AGAAAA TTTTATATTCTCTAG TERM 4513 3142399 - 3142419 + g 79 -8.5 -3.97139 | opp_overlap 3142399 TAAATCCAAAGTATA TTATTTTAG ACG CTAAAATAA TTATTATTAAAATTA TERM 4514 3142830 - 3142879 + r 100 -16.9 -4.47049 | opp_overlap 3142836, overlap 3142836 TATAACTTCCTTTAA TTCAAATATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATATTTATA TTTATATTTATATTT TERM 4515 3142836 - 3142873 + r 100 -20.3 -4.47049 | opp_overlap 3142836, overlap 3142830 TTCCTTTAATTCAAA TATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATA TTTATATTTATATTT TERM 4516 3142873 - 3142836 - R 100 -20.3 -3.75153 | opp_overlap 3142836 3142830 TTCCTTTAATTCAAA TATAGCCTAAAGAACTA TTAA TAGTTCTTTAGGCTATA TTTATATTTATATTT CLD_1641 3144515 - 3143073 - | xanthine/uracil permease family protein TERM 4517 3144929 - 3144900 - R 95 -11.1 -3.76411 | opp_overlap 3144886 3144885 3144898 3144895 TTAAAATTATTCAAA TTTTAGTTTTATA GTTC TATAAAACTAAAA GATAATGTTTTTATA TERM 4518 3145030 - 3145004 - R 100 -13.2 -4.64383 | opp_overlap 3144999 3144998 AAGTACAAATTAAAA TTCAGATAGAGT AAA ACTCCATCTGAA TTAAACTTTTATTTA CLD_1640 3146456 - 3145104 - | sodium:alanine symporter family protein TERM 4519 3146251 - 3146268 + g 73 -8.5 -3.45527 | opp_overlap 3146250, overlap 3146248 GCTGTTGCTAATGAT TGGAATG AACT CATTCCA TCTTTACCTGCTTTT TERM 4520 3147015 - 3147058 + r 79 -10 -2.67973 | opp_overlap 3147015, overlap 3147017 3147036 3147038 ATTTTACTTATATAA TAGTCAATAAATTAATGATT TTTT AATTGTTAAATTATTGACTA TCCTATCCATTATGT TERM 4521 3147141 - 3147158 + r 100 -9.9 -5.96894 | AACCCATTACTCCCC TCCGCAT TTAA ATGCGGA TTTTTTTATTTCACT TERM 4522 3147260 - 3147281 + r 75 -8.9 -3.26298 | opp_overlap 3147262, overlap 3147258 3147256 GAATAACGTCCTCAA GAGTATAAA TGAA TTTATACTC TATATTTAAAGTCCT CLD_1639 3149697 - 3147406 - | putative helicase TERM 4523 3148708 - 3148728 + g 72 -4.1 -5.06411 | TAAAGAACCTTTTAA TTTATTACT ATT AGTTATAAA TTTGTTTTCTTTTCT TERM 4524 3149930 - 3149903 - R 84 -5 -5.74288 | opp_overlap 3149928, overlap 3149905 3149923 ATAAACAATAAAAAA TAGTGCAATAAA AAAA TTTATTACACTG TAAGATATTATAGAT TERM 4525 3149928 - 3149905 - R 81 -7.6 -4.47161 | overlap 3149903 3149923 AAACAATAAAAAATA GTGCAATAAA AAAA TTTATTACAC TGTAAGATATTATAG adh 3151058 - 3149997 - | NADP-dependent alcohol dehydrogenase TERM 4526 3151241 - 3151251 + r 81 -5.4 -5.41143 | opp_overlap 3151229 3151241, overlap 3151228 3151229 3151250 TATTGTTGCATTTAA CAAC ATT GTTG TTTTTTTAAACACTA CLD_1637 3153180 - 3151282 - | sigma-54 dependent trancsriptional regulator TERM 4527 3151498 - 3151486 - G 75 -4.9 -5.14563 | opp_overlap 3151479 3151486 TTGCTTATCAAAAAA TTTTG TTT CAAAA TTTAAAGAAACATTT TERM 4528 3153102 - 3153114 + g 85 -4.9 -5.626 | TAATAATTGTAGTAG GAAAA ATT TTTTC TTTTTTTATACCATA TERM 4529 3153313 - 3153286 - R 86 -3.6 -6.12328 | gap 1, opp_overlap 3153292 ATAACACAAAAAAAA TCTATG-CTAACC ATT AGTTAATCATAGA TTTTTTCATAATTTA trmU 3154528 - 3153467 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 4530 3155148 - 3155160 + r 70 -4.9 -4.76191 | overlap 3155139 TTTTAAGTCGTAATT TACTA CTG TAGTA TTTCTTTTAATATAT CLD_1635 3156781 - 3155150 - | M20 family peptidase TERM 4531 3155849 - 3155868 + g 72 -2.9 -5.42131 | gap 1 TATATCCTTTAAATT CTCCATGA TTTCT TC-TGGAG TTTTTTGTATAGTTA CLD_1634 3157278 - 3156781 - | hypothetical protein CLD_1633 3157612 - 3158937 + | HlyC/CorC family protein TERM 4532 3158968 - 3158943 - T 100 -9.1 -5.54894 | opp_overlap 3158944 3158949, overlap 3158944 AAGTGAGTAAAAAAA GTAGAACCTCT ATTT AGAGGTTCTAT AAAATTAAAGTACAT TERM 4533 3158967 - 3158944 - T 100 -12.6 -3.9131 | opp_overlap 3158944 3158949, overlap 3158943 AGTGAGTAAAAAAAG TAGAACCTCT ATTT AGAGGTTCTA TAAAATTAAAGTACA CLD_1632 3159579 - 3159289 - | hypothetical protein thiC 3160911 - 3159598 - | thiamine biosynthesis protein ThiC purF 3162498 - 3161122 - | amidophosphoribosyltransferase TERM 4534 3162575 - 3162550 - R 93 -4.7 -6.20267 | overlap 3162554 TTAAAAATAAAAAAA TAAAGCCCACC CGAA GGTAAGCTTTT TATACTATATATAAT TERM 4535 3162571 - 3162554 - R 81 -5.5 -5.36181 | overlap 3162550 AAATAAAAAAATAAA GCCCACC CGAA GGTAAGC TTTTTATACTATATA CLD_1629 3163042 - 3162761 - | hypothetical protein CLD_1628 3163787 - 3163098 - | hypothetical protein CLD_1627 3164439 - 3163789 - | hypothetical protein TERM 4536 3164398 - 3164419 + g 85 -4.5 -5.52096 | opp_overlap 3164398 AGTTTTAATTATATA GGACTTAAT AATA ATTAAATCC TTTTTTATTAAATTT CLD_1626 3165303 - 3164446 - | ABC transporter, ATP-binding protein TERM 4537 3164910 - 3164924 + g 80 -2.2 -5.80364 | TCATTTTCATACCCT TAGAAA GAT TTTTTA TTTTTTTCTTAGGAT CLD_1625 3165881 - 3165510 - | GntR family transcriptional regulator TERM 4538 3165906 - 3165940 + H 100 -15.4 -5.61596 | opp_overlap 3165912 3165921, overlap 3165908 CCTTACCTTATATCG TACATACTGTATATAT ATA ATATATACAGTATGTG TTTTTTTGTCAACCT TERM 4539 3165908 - 3165938 + H 100 -15.8 -4.45201 | opp_overlap 3165912 3165921, overlap 3165906 TTACCTTATATCGTA CATACTGTATATAT ATA ATATATACAGTATG TGTTTTTTTGTCAAC TERM 4540 3165934 - 3165912 - H 82 -10.8 -2.90763 | opp_overlap 3165908 3165906, overlap 3165921 CTTATATCGTACATA CTGTATATAT ATA ATATATACAG TATGTGTTTTTTTGT TERM 4541 3166282 - 3166311 + H 90 -5.9 -5.95539 | gap 1, opp_overlap 3166283 GCACCGCGAATATAA TCTTC-GTCCTAAT GAT ATTAGGATAGAGGA TTTTTTTATTTGCAA