TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.687189 %AT, 441017 nt, 1821 terms. Intergenic: 0.65516 %AT, H2T: 50152 nt, 150 terms; T2T: 22892 nt, 221 terms; H2H: 33278 nt, 285 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|38349555|ref|NC_005213.1| Nanoarchaeum equitans Kin4-M, complete genome (length 490885) TERM 1 2577 - 2566 - g 74 -7.2 -4.13014 | opp_overlap 2566 GTTAGACCTGTAAAA GGGG TAAA CCCC ACAATACCCCATTGG NEQ003 883 - 2691 + | hypothetical protein NEQ002 3189 - 2668 - | hypothetical protein NEQ004 3748 - 3290 - | hypothetical protein NEQ005 4665 - 3745 - | hypothetical protein NEQ006 5582 - 5028 - | hypothetical protein NEQ007 4680 - 5090 + | hypothetical protein TERM 2 5070 - 5101 + gF 77 -8.8 -3.69883 | opp_overlap 5079 GAAATAAAAAATGGC TATTGCAAACCCAA AGCC TAGGGTTAGCAATA TTAGTTCTTTCTTAT TERM 3 5971 - 5988 + G 70 -7.1 -3.59979 | opp_overlap 5987 TGTTTTAACTGGTTG TATGGTT AGTG AACCATA TTTAAAATACAAAGA NEQ008 5759 - 7000 + | hypothetical protein NEQ009 7401 - 7105 - | hypothetical protein NEQ010 8423 - 7398 - | hypothetical protein NEQ011 8728 - 8399 - | hypothetical protein TERM 4 9122 - 9134 + G 71 -7.7 -3.39664 | opp_overlap 9121 9122, overlap 9121 9124 ATATGTATTTAAAAG GGGTA GGC TACCC TCCTTTTTATTACCT NEQ012 8775 - 9815 + | hypothetical protein NEQ013 9793 - 10833 + | hypothetical protein NEQ014 11984 - 11037 - | hypothetical protein TERM 5 11962 - 11952 - G 71 -3.2 -5.22312 | AGGGATAGCAAAAAA CCCA GGT TGGA AATATCTAATTCTGC NEQ015 12031 - 13089 + | hypothetical protein TERM 6 13412 - 13402 - T 76 -4 -5.23396 | AAGAATTAAGAAAAA TATG GAC CATA TTAAAACTATTACCA NEQ016 15147 - 14872 - | hypothetical protein NEQ017 15157 - 16158 + | hypothetical protein NEQ018 16354 - 17631 + | hypothetical protein TERM 7 18227 - 18212 - g 72 -3.4 -5.1523 | TGTACAAGATAAAAA TATATT ACAA AATATA CTACAGAAGGAAGGC NEQ019 17628 - 18596 + | hypothetical protein TERM 8 18595 - 18618 + G 72 -2.4 -5.40474 | TAAACCATCTATTAT GAAAGCCTTA GCTT TTAGGATTTC TTTTTTTGAACACCT NEQ020 18593 - 19297 + | hypothetical protein NEQ022 19294 - 21561 + | hypothetical protein NEQ021 22061 - 21555 - | hypothetical protein TERM 9 22643 - 22626 - g 72 -5.7 -4.39652 | overlap 22634 22636 AGCATAAACAAATAA TAGAAAA ATAT TTTTCTA AAATAGAAGAAGGAA TERM 10 22648 - 22634 - g 77 -4.4 -5.23765 | overlap 22626 22636 CAAATAATAGAAAAA TATTTT TCT AAAATA GAAGAAGGAAACCCA TERM 11 22686 - 22676 - g 95 -5.4 -6.04324 | CCAAAAAAGAAAAAA CCTA CTA TAGG GAAGGGCAAAGATAT NEQ023 22304 - 23197 + | hypothetical protein NEQ024 23219 - 24316 + | hypothetical protein NEQ025 24345 - 25118 + | hypothetical protein NEQ026 25199 - 25507 + | hypothetical protein TERM 12 25953 - 25943 - g 77 -4 -5.46276 | opp_overlap 25943 AAGAGATATAAAAAA CAAA AAC TTTG TTATTGGTAATGTTG NEQ028 25482 - 26426 + | hypothetical protein NEQ027 27497 - 26403 - | hypothetical protein TERM 13 27033 - 27021 - G 76 -5.5 -5.03994 | CTTTATAGAGAAAAA CACTG TGC CAGCG ATATACAACCTATTT TERM 14 27142 - 27166 + g 71 -3 -5.2112 | gap 1, opp_overlap 27163 ACTGGATCTTTGTTA TTTCTGTACTT AGGG GAG-ACAGAAA TTTTTTCATAGTATT NEQ029 28059 - 27544 - | hypothetical protein NEQ030 28691 - 28056 - | hypothetical protein NEQ031 29234 - 28722 - | putative RNA-processing protein NEQ032 29432 - 30583 + | hypothetical protein NEQ033 30576 - 32363 + | hypothetical protein NEQ034 32363 - 32998 + | hypothetical protein NEQ035 33020 - 34420 + | hypothetical protein NEQ036 34449 - 34733 + | hypothetical protein rpl37ae 34755 - 35015 + | 50S ribosomal protein L37Ae NEQ037 35199 - 34999 - | hypothetical protein TERM 15 35269 - 35301 + H 93 -7.5 -5.66989 | overlap 35270 GGTGGGGCAGCCTGG AGTGCCCGGGGGGCT CAT ATCCCCCTGGCCGCC TTTTTTTCATATTTA TERM 16 35270 - 35300 + H 93 -11 -3.97753 | overlap 35269 GTGGGGCAGCCTGGA GTGCCCGGGGGGCT CAT ATCCCCCTGGCCGC CTTTTTTTCATATTT NEQ039 35478 - 36131 + | transcription factor NEQ041 36124 - 36771 + | hypothetical protein NEQ040 37566 - 36739 - | hypothetical protein TERM 17 37161 - 37148 - G 71 -5.3 -4.69326 | opp_overlap 37148 ACATCGAACATAAAA GCTAT CGCC ATAGC GCTCGCTATATGGAA TERM 18 37239 - 37225 - G 79 -7.2 -4.35017 | CAAAAAGCTAACAAA CCAATA AAT TATTGG TATAAATAAGAAAGA NEQ042 39014 - 37563 - | hypothetical protein TERM 19 37647 - 37672 + g 71 -2 -5.48063 | TAACAAAACTTTTGG TTCATACATA GAGCCG TATTTATGAA TTTTTTCTCTTAAGT TERM 20 38646 - 38660 + g 75 -2.8 -5.65927 | opp_overlap 38646, overlap 38639 TAAATATGGAGCAAA TCTGTT AAA ATCAGA TTTTTTCTTTGCATC TERM 21 39026 - 39010 - G 75 -8.1 -3.72695 | ATCTTTTTTACCAAA TCCATAT ATA ATATGGA AAGTTATAATTTATT NEQ043 39294 - 39040 - | hypothetical protein NEQ044 39916 - 39323 - | hypothetical protein NEQ045 41099 - 39873 - | hypothetical protein NEQ046 41406 - 41032 - | hypothetical protein NEQ047 41393 - 42061 + | hypothetical protein NEQ048 42006 - 42803 + | hypothetical protein TERM 22 42969 - 42958 - g 70 -4.4 -4.9218 | TATTTATTAGAAAAA TTCG TTGA CGAA GCGAAGAGTAAGCCC TERM 23 43077 - 43087 + G 78 -6.8 -4.42851 | overlap 43064 AGCCAAAGAGAGGCC CCCA TTT TGGG TTTTGCCTTTGTTAG TERM 24 43103 - 43121 + G 82 -7.6 -4.38927 | TTTTGCCTTTGTTAG TTAAAGAA AAT TTCTTTAA TTTATTGTCTAGAAC NEQ050 42814 - 44436 + | hypothetical protein NEQ049 45112 - 44420 - | hypothetical protein TERM 25 44712 - 44728 + g 81 -4.5 -5.43866 | overlap 44706 TCAAAATCTTTTAAC CTAAATG GTT TATTTAG TTTTTTTAGCAATTC NEQ051 45753 - 45112 - | hypothetical protein NEQ052 45858 - 46934 + | peptide chain release factor 1 NEQ053 48291 - 46948 - | hypothetical protein NEQ054 48814 - 48404 - | hypothetical protein TERM 26 48738 - 48722 - G 72 -3.7 -5.25699 | opp_overlap 48722 AGTATACAACAAAAA TGCTATA TAA TAAAGCA GTTTAAATATTATTA NEQ055 48853 - 50226 + | hypothetical protein NEQ057 50213 - 51247 + | hypothetical protein NEQ056 51779 - 51234 - | hypothetical protein rps12P 52191 - 51760 - | 30S ribosomal protein S12P NEQ059 52238 - 54031 + | ATPase NEQ060 54182 - 54736 + | hypothetical protein TERM 27 56081 - 56059 - g 83 -10.8 -2.98223 | opp_overlap 56057 56054 TATTTAGATGATACA TTGGTTTTTT CGC AAAAAACCAA ACTAGTATTGCCTGT NEQ061 55825 - 56691 + | hypothetical protein NEQ062 58431 - 56818 - | hypothetical protein NEQ063 59030 - 58428 - | hypothetical protein NEQ064 59961 - 59011 - | hypothetical protein NEQ065 59997 - 60233 + | hypothetical protein TERM 28 60455 - 60439 - T 72 -2.9 -5.22768 | AGAAGAAAAAAGAAA CAATCCC TAA GGATTTG GAGGAAAAATTTTAG NEQ066 61065 - 60445 - | hypothetical protein NEQ067 61805 - 61050 - | hypothetical protein NEQ068 63816 - 61786 - | hypothetical protein rps11p 64144 - 63752 - | 30S ribosomal protein S11P TERM 29 64204 - 64218 + G 73 -7.8 -3.72576 | opp_overlap 64195 64203 ATATTACCATCGAAT GGGGGA GGA TCCCTC TTTCCTAGGAAACAA TERM 30 64709 - 64681 - g 70 -8.3 -3.03214 | AATGGATTATAGAGA TCTTGTATACGCA GAT CGCATATACAAAA TGGATGTTAGCATTG NEQ070 64202 - 64999 + | hypothetical protein NEQ072 64996 - 65676 + | hypothetical protein NEQ071 66171 - 65668 - | hypothetical protein NEQ073 66709 - 66140 - | hypothetical protein NEQ074 67453 - 66875 - | hypothetical protein rpl18p 68070 - 67483 - | 50S ribosomal protein L18P TERM 31 68241 - 68223 - gH 83 -8.2 -4.24786 | TTTACAAGAGACAAA GAGCTTTT AGT AAAAGCCC CACAGATATTACAAG TERM 32 69775 - 69764 - gH 71 -3 -5.06961 | opp_overlap 69764 ATTAATAAAAATAAA CTTA GAAG TAAG ATCTTTTGAAGGTTT NEQ076 68064 - 69971 + | hypothetical protein TERM 33 70160 - 70188 + G 71 -8.1 -3.27525 | opp_overlap 70157 70160 70162 70182, overlap 70156 TAGAGTTCAATACAA TACCGCTTTAGGC CCC GCCAAAGGGGGTA TTAGGTTTAGCCCCA NEQ077 69993 - 71207 + | hypothetical protein NEQ077a 71224 - 72033 + | hypothetical protein NEQ078 72158 - 73591 + | hypothetical protein TERM 34 74421 - 74431 + G 91 -5.4 -5.74684 | AGTAAGGGAGACCAT GTTG CTG CAAC TTTTTATTTTTCTTA NEQ079 73896 - 74843 + | hypothetical protein TERM 35 75212 - 75202 - g 70 -4 -5.12068 | CATAGCGAAGAAAAA GTAA CAT TTAC TAGAGTTTTACCGAA TERM 36 75933 - 75918 - g 77 -9 -3.19668 | TATCACGCAAGGGAA TGGAGG AGTG CCTCCA TATAAAAATTTCACA NEQ080 74944 - 76152 + | hypothetical protein NEQ081 76183 - 76785 + | hypothetical protein NEQ082 76817 - 78118 + | elongation factor 1-alpha rps10p 78118 - 78447 + | 30S ribosomal protein S10P TERM 37 79353 - 79334 - g 75 -5 -5.04597 | ATTTAGACATAAAAA GGGAAAAA GGTG TTTTGCCC GACAATATAGAATAT NEQ084 78469 - 79527 + | hypothetical protein NEQ085 79524 - 80051 + | hypothetical protein NEQ086 80035 - 81528 + | hypothetical protein TERM 38 82001 - 82011 + G 71 -6.8 -3.96216 | CCTAGCGAAGGGGAA GCAG AAG CTGC TTATTTAACTAAAAA TERM 39 82134 - 82124 - g 84 -5.4 -5.43553 | AGCGAAAAAAGAAAA TTGC CAG GCAA AAATATTTATGTGGA TERM 40 82281 - 82259 - g 70 -4.1 -4.94972 | overlap 82261 GATTATAATGAAAAA GTCCCTGGC ATAGG GCCAAAAAC AGCAATAGAAATAGT NEQ088 81536 - 82555 + | flap endonuclease-1 NEQ087 84323 - 82536 - | hypothetical protein TERM 41 84103 - 84092 - G 76 -7.2 -4.24204 | opp_overlap 84092 TACCTATATGTAAAA CCCC TGTT GGGG TATTAGCACATCTAA TERM 42 84158 - 84172 + g 80 -7.2 -4.72272 | opp_overlap 84169 TCTTTGCTCTTTCTA TTGCTT CTA AAGCAA TTTTTACTGCCCAGA NEQ089 85018 - 84323 - | hypothetical protein NEQ090 86202 - 85021 - | hypothetical protein rplP0 87040 - 86186 - | acidic ribosomal protein P0 rpl14p 87470 - 87069 - | 50S ribosomal protein L14P NEQ094 87733 - 88353 + | hypothetical protein rpl5p 88855 - 88346 - | 50S ribosomal protein L5P NEQ095 88887 - 89444 + | hypothetical protein NEQ096 89466 - 90296 + | hypothetical protein NEQ097 90266 - 90919 + | hypothetical protein NEQ098 91776 - 90946 - | hypothetical protein NEQ099 91875 - 92651 + | hypothetical protein TERM 43 93302 - 93286 - gf 80 -2.9 -5.64873 | TGTAACAATAAAAAA TGGCGGA AGC TACACCA TAAGCCAATCTAAAT NEQ100 92624 - 93595 + | hypothetical protein NEQ101 93702 - 94184 + | hypothetical protein NEQ103 94177 - 95889 + | V-type ATP synthase subunit A hisS 97063 - 95849 - | histidyl-tRNA synthetase NEQ104 98040 - 97060 - | hypothetical protein TERM 44 97754 - 97768 + g 74 -5.7 -4.64766 | opp_overlap 97737 97754 CTAGTAAATATACCA GGGAT AGCCA ATCCC TTTTTGGGCTCTACC NEQ105 98417 - 98037 - | 30S ribosomal protein S6e NEQ107 98707 - 99819 + | hypothetical protein NEQ109 99803 - 100720 + | hypothetical protein NEQ108 101753 - 100695 - | N(2),N(2)-dimethylguanosine tRNA methyltransferase NEQ110 103012 - 101750 - | hypothetical protein TERM 45 102321 - 102331 + g 71 -5.4 -4.68506 | overlap 102323 TGGCCTTTCTTAATT GCTT CTA AAGC TTTTTGGAATTCCTT NEQ111 103665 - 103009 - | exosome complex RNA-binding protein Rrp42 NEQ112 104675 - 103692 - | hypothetical protein NEQ113 105105 - 104665 - | hypothetical protein NEQ114 106176 - 105115 - | hypothetical protein TERM 46 105627 - 105643 + g 72 -3.7 -5.26316 | TAAAAGCATAGGTAT TATCGAT TTT AACGATA TTTTTTATAACATAA NEQ115 107291 - 106158 - | tryptophanyl-tRNA synthetase TERM 47 107086 - 107076 - G 76 -5.4 -4.96848 | opp_overlap 107076 GCCTGTATATAAAAA GAAG CCT CTTC CTTCTTCGTAGTCCT TERM 48 107319 - 107309 - H 80 -2.6 -5.72118 | opp_overlap 107309 AAAAAAGATAAAAAA TTTT ATA AAAA ATGTTTTTGTTCCCC TERM 49 107406 - 107421 + G 73 -7.6 -3.71991 | AGTATGGAATTTGGC CCCTTT TTAT AAAGGG TTGTTAACATTTATA NEQ116 107320 - 107637 + | hypothetical protein TERM 50 108567 - 108555 - g 78 -9.1 -3.5268 | overlap 108551 AAAAACAAAATCCAA GGTGG GGG CCACC CAAGGGCAGCAGCAA NEQ118 107634 - 108647 + | hypothetical protein NEQ117 109071 - 108613 - | hypothetical protein TERM 51 109008 - 109025 + g 76 -7.1 -4.33997 | GATAGCCTAACTTTT TAGCTAA TGCT TTAGCTA TTGTTGTTTTTCCTA NEQ119 109802 - 109068 - | hypothetical protein TERM 52 109160 - 109174 + g 82 -2.8 -6.09196 | CTATTCGTTTTATGG CAATAG CCC CTTTTG TTTTTTTATTTTCGA NEQ120 110610 - 109843 - | hypothetical protein NEQ121 110671 - 111036 + | hypothetical protein TERM 53 111101 - 111081 - g 72 -8.9 -2.73483 | AGTCTAGGGGAAGGA CGCCGGCCT GCC AAGCCGGAG GTCCCGGGTTCGAAT NEQ123 111051 - 111551 + | hypothetical protein NEQ122 112301 - 111540 - | hypothetical protein TERM 54 111652 - 111680 + g 70 -6.2 -4.19276 | gap 1, overlap 111660 TTTATTATTCTTTTA CCGAAATGTGTTA GTAT TAACAT-TTTCGG TTTTGCCAATTTTGC NEQ124 113563 - 112319 - | hypothetical protein TERM 55 113100 - 113113 + g 74 -6.7 -4.2354 | overlap 113089 113087 113111 TTGATTGCAAAATTT GCCAT CTCT ATGGC TTGTTTTAGCCTTTC NEQ125 113656 - 114354 + | fibrillarin TERM 56 114529 - 114513 - g 71 -2.2 -5.47846 | overlap 114514 AATGAAAAAATAAAA GTTGGG CAATT CCCAAA AAGAAAACCCAAAGG NEQ126 114348 - 115526 + | glutamyl-tRNA(Gln) amidotransferase subunit D TERM 57 115603 - 115589 - gT 70 -2.2 -5.28315 | opp_overlap 115591, overlap 115591 ACAAAAGCGAAAAAA TTCTTT TTG AAAAAA GGCTATTATGTATAT TERM 58 115800 - 115812 + GT 73 -7.7 -3.6502 | opp_overlap 115799 115809 AACCTATAGAAGGAT TCGGT AAT ACCGA TTTAGATACCAAATC TERM 59 115822 - 115834 + GT 75 -4.9 -4.9445 | opp_overlap 115809 TACCGATTTAGATAC CAAAT CAA ATTTG TTTTTCCTTCCTTCT NEQ127 117727 - 115826 - | hypothetical protein NEQ126a 115523 - 115906 + | hypothetical protein TERM 60 117197 - 117185 - GT 73 -7.7 -3.72481 | opp_overlap 117185, overlap 117183 117180 GGGACTAAAATAATA TGCAG AAG CTGCA TGTGATAGGTGGTGG NEQ128 118801 - 117758 - | hypothetical protein TERM 61 118073 - 118092 + g 75 -5 -5.07523 | TATATCTAATTCTTT GAATACCT CTAT AGGAATTC TTTTCTTTGTATCTA NEQ130 118934 - 119263 + | translation initiation factor IF-1A NEQ129 120135 - 119242 - | hypothetical protein NEQ131 120161 - 120718 + | hypothetical protein TERM 62 121250 - 121264 + G 72 -7.1 -3.76482 | opp_overlap 121250 GTGGGGGCACAGGAA CTGGG GCTGG CCCAG TTATTGCTGATATAG NEQ133 120868 - 121935 + | cell division protein FtsZ NEQ132 122527 - 121928 - | hypothetical protein TERM 63 122498 - 122472 - GT 76 -3.9 -5.21683 | ATGTAAAAAAATAAA GTTATATAC GCTAGCATT GTATATAAC CGCCATATTTTATGC NEQ134 123342 - 122482 - | hypothetical protein TERM 64 123224 - 123242 + gr 70 -3.8 -4.86862 | overlap 123226 TTAATTATATTTGAT TCCCATTG CTT CGATGGAA TTTTAGTTTTTTCGA NEQ135 124844 - 123318 - | hypothetical protein TERM 65 124103 - 124113 + gr 74 -5.4 -4.70534 | GGCTTCCTATCCAAC TGCT AAA AGCA TTTTGTATATCTTTA NEQ136 125575 - 124805 - | hypothetical protein TERM 66 125130 - 125153 + gr 93 -10.4 -4.0251 | CTAAGGATTTTACCT CCAATCCTAT AACA ATAGGGTTGG TTTGCTTCTAATAAT NEQ137 127263 - 125554 - | hypothetical protein TERM 67 125761 - 125774 + g 84 -5.3 -5.38549 | GTAGATCCCATTACC CTCTT TAGG AAGAG TTTTTATTGTTTCGC TERM 68 127458 - 127481 + Gr 77 -5.4 -4.8743 | CATACCAAAAAGCCC TAGTATAGAT TTTA ATCTATCCTA TTTGTTTGTTTTGGC NEQ138 128998 - 128285 - | hypothetical protein NEQ139 127297 - 128406 + | hypothetical protein NEQ140 129858 - 128980 - | hypothetical protein TERM 69 129667 - 129687 + g 71 -2 -5.40474 | gap 1, opp_overlap 129671, overlap 129668 129671 GTTTTTAGTCTCTAA TA-AACCAA TAGT TTGGTTATA TTTTTTTAAAAGACT NEQ141 131510 - 129888 - | hypothetical protein TERM 70 131546 - 131559 + H 70 -2.4 -5.24129 | ATTAAAAACATTATG GCTA AAATTA TAGC TTTTTTGTCCGAGCA TERM 71 132401 - 132414 + G 74 -3.9 -5.24796 | GGCGATCTAATGGAT TTCTT AATA AAGAA TTTTTCTTCTGTAGG NEQ144 131657 - 133360 + | DNA topoisomerase VI subunit B NEQ143 133780 - 133334 - | hypothetical protein TERM 72 134563 - 134547 - g 79 -10.1 -2.86539 | TTGAATGTAGAACTA CTCGCCC CCG GGGCGAA ACCAGGAAGGCTATT TERM 73 134604 - 134584 - g 79 -9.9 -2.79023 | opp_overlap 134583 GAAGGCTATTAATTA TTTCTAAAG ATG CTTTAGAAA CTCTTAGAGAGAGGA rpl4lp 133827 - 134633 + | 50S ribosomal protein L4P NEQ145 135251 - 134598 - | hypothetical protein TERM 74 135320 - 135280 - R 72 -4.8 -4.78149 | overlap 135281 GTGATAATTTAAAAA TGGGGCCGCCGG-GAT TTGAACCCGGG ACCTCCGGCG-CCCCA GGCCGGCGCCCTACC NEQ147 135775 - 135374 - | hypothetical protein NEQ148 137045 - 135711 - | hypothetical protein NEQ150 137072 - 137365 + | hypothetical protein NEQ149 137894 - 137352 - | hypothetical protein NEQ151 138193 - 137891 - | hypothetical protein NEQ152 139480 - 138302 - | hypothetical protein TERM 75 138476 - 138486 + g 77 -4 -5.40014 | CCACGCCGGAGGTCC CAAA TGT TTTG TTTTTATTGTTATTT TERM 76 138518 - 138530 + g 72 -4.9 -4.84761 | opp_overlap 138514 138510 138518 CTCACAACAAACCCA CAAAT AGG ATTTG TTTTTGTCAAAATCT NEQ153 139761 - 139480 - | hypothetical protein NEQ154 140172 - 139792 - | hypothetical protein NEQ155 143145 - 140260 - | hypothetical protein NEQ156 144920 - 143109 - | DNA-directed RNA polymerase subunit B' TERM 77 143234 - 143249 + gr 82 -3.2 -5.59962 | TTTCTCCACAAACTG GGCAAT AAGC AGTGCC TTTTTCTTTGTTTTC NEQ157 145932 - 144973 - | hypothetical protein TERM 78 145040 - 145054 + g 72 -5.7 -4.42594 | TCTTTAAGCTCTTTT GGGTT AGTAA AACCC TTTATATTTAATTTC TERM 79 145335 - 145355 + g 74 -5.6 -4.92812 | overlap 145351 TATCTCCGAAAGGGG TTTTGATT TTACC AATCAAAA TTTGTTTTGTTGTAA NEQ158 146043 - 146624 + | hypothetical protein NEQ159 147267 - 146728 - | hypothetical protein TERM 80 147366 - 147381 + G 71 -3.2 -5.1287 | opp_overlap 147366 147367, overlap 147367 AAGATAAAATTAGAA CTGGGA CTTT TCCCAC TTTTTTAACTATCCA TERM 81 148254 - 148238 - g 72 -8.7 -3.02461 | GAAGTCTTTGTAACA GCCCCAA TAA TTAGGGC CATACTAAAAATATG NEQ160 147299 - 148270 + | hypothetical protein NEQ162 148267 - 149250 + | hypothetical protein NEQ161 149369 - 149202 - | hypothetical protein NEQ163 149716 - 149411 - | hypothetical protein NEQ164 150581 - 149706 - | hypothetical protein TERM 82 150714 - 150701 - R 77 -3.1 -5.41746 | AATTGCCTAAAAAAA TACCC ATAA AGGTA AATCTTAAAACGGAT NEQ165 151422 - 150796 - | hypothetical protein TERM 83 150834 - 150846 + gr 90 -4.9 -5.76237 | opp_overlap 150834 150832 CTTTAAGAAATAACA CATTA ATA TAATG TTTTTTCTTTGTGTG NEQ166 151945 - 151349 - | hypothetical protein TERM 84 152237 - 152251 + G 72 -7.1 -3.87815 | TTTTATTGTCTTATA CCCCA TTAAT TGGGG TTTCTCAAACTGGGG TERM 85 152989 - 152975 - g 81 -10 -3.01912 | opp_overlap 152975 TTAGATTGATATACA CTGGGA ATA TCCCAG TTATATTCGCTTTCG TERM 86 152975 - 152989 + G 86 -10 -3.73873 | opp_overlap 152975 TTAGATTGATATACA CTGGGA ATA TCCCAG TTATATTCGCTTTCG NEQ168 152110 - 153540 + | preprotein translocase subunit SecY rfc 153568 - 154536 + | replication factor C small subunit NEQ169 156382 - 154526 - | hypothetical protein TERM 87 155153 - 155165 + g 81 -9.1 -3.81027 | opp_overlap 155152 ACCGGGCCTAGCAAC CTGGG CAA CCCAG TTTGGATTCATTAGA NEQ171 157489 - 156422 - | hypothetical protein TERM 88 156625 - 156644 + g 77 -8 -3.8448 | opp_overlap 156624 CTTTCGTTAAGCTAT CAAAATAG ACCC CTATTTTG TTTGATGGTATGTTA TERM 89 156917 - 156896 - G 75 -8.1 -3.73936 | opp_overlap 156896 156895 AAATGGCATTAATAA TCCTATACC GATT GGTATAGAA GGTTTTTCAAAGAAC NEQ172 158379 - 157465 - | hypothetical protein TERM 90 158307 - 158331 + gH 70 -7.3 -3.71848 | TTTTAAAAATCGTTT TTTGGAATACA ACG TGTATTCGAAA TTGTTGATAAAAAAA TERM 91 159361 - 159347 - gH 74 -8.6 -3.31322 | GGGAATTGTTTAGAA GTGCAT TCT ATGCAC AATTGCAAAACTTAA NEQ173 158308 - 159789 + | DNA-directed RNA polymerase subunit beta'' TERM 92 160191 - 160175 - g 71 -8 -3.19511 | GGATATAACTTAAGA GAAGGG CGATT CCCTTC AAACAATAAAGAATG NEQ175 159773 - 160918 + | hypothetical protein NEQ174 161685 - 160915 - | hypothetical protein TERM 93 161652 - 161663 + g 80 -5.8 -4.93696 | ATAGTTCGTCCATTC CAGG GATA CCTG TTTTTACTCTTTGGA NEQ176 161733 - 161918 + | hypothetical protein NEQ177 163932 - 162031 - | threonyl-tRNA synthetase TERM 94 164014 - 163991 - H 74 -6.6 -4.34444 | gap 1, opp_overlap 163991 164008 GCAAGATAACATAAA GCCTGCCGGGC GTA GCTCAGC-GGC AGAGCGGCCGGCTGT TERM 95 164365 - 164344 - g 100 -11.5 -4.07885 | GAGTTGTTGTTAAAA CTGCCGGCC GCGA GGCCGGAAG AGTAGGAGTAGTAGT NEQ178 164310 - 164654 + | 50S ribosomal protein L14e NEQ179 164686 - 164946 + | hypothetical protein TERM 96 164964 - 164978 + G 72 -8.6 -3.15544 | opp_overlap 164960 TGGACGATATAGTTT TGGCTT TTG AAGCCA TTACTGGAGGTAAAC NEQ180 164948 - 165358 + | hypothetical protein NEQ182 165355 - 165645 + | hypothetical protein NEQ181 166207 - 165635 - | 50S ribosomal protein L15e TERM 97 166097 - 166131 + g 78 -6.6 -4.41158 | gap 1, opp_overlap 166106, overlap 166096 166099 TGTTGGTCTTTCCAC TTCAACAATTGGGGG TTCTCT CCTCC-ATTGTTGGA TTCTTTGTTTATATA NEQ183 166244 - 166570 + | hypothetical protein NEQ184 166567 - 167163 + | exosome complex RNA-binding protein Rrp4 gatB 167163 - 168512 + | aspartyl/glutamyl-tRNA amidotransferase subunit B TERM 98 168661 - 168646 - g 71 -7.6 -3.5511 | overlap 168644 CCTTATGGAGAAAGA GCAATC GTAA GATTGC CAACGGGTATGGAAT NEQ186 168505 - 169614 + | proteasome-activating nucleotidase NEQ188 169614 - 169934 + | hypothetical protein NEQ187 170403 - 169924 - | 30S ribosomal protein S19e NEQ190 170432 - 171328 + | hypothetical protein NEQ189 172383 - 171319 - | hypothetical protein TERM 99 172254 - 172229 - G 77 -7.7 -4.02979 | opp_overlap 172228 172229, overlap 172224 172221 AAAACATTAACGAAA TTATTCGCTAT TAGG ATAGCGATTAA GGTTTTATCCAAATC TERM 100 172438 - 172415 - H 73 -4 -5.19261 | gap 1, opp_overlap 172427, overlap 172417 172419 AAATGGATTAAAAAA TA-TAGTTCGA ACT TCGAACCAGTA GAGTTCGAAATTTTT TERM 101 172435 - 172417 - H 81 -8.2 -4.2131 | opp_overlap 172427, overlap 172415 172419 ATGGATTAAAAAATA TAGTTCGA ACT TCGAACCA GTAGAGTTCGAAATT TERM 102 172433 - 172419 - H 77 -8.6 -3.69447 | opp_overlap 172427, overlap 172417 172415 GGATTAAAAAATATA GTTCGA ACT TCGAAC CAGTAGAGTTCGAAA NEQ191 172477 - 173145 + | hypothetical protein NEQ193 173193 - 173603 + | hypothetical protein NEQ192 175362 - 173587 - | hypothetical protein TERM 103 174384 - 174397 + g 71 -5.3 -4.64591 | GGCCCAAAACTCCTA TCCAA GGCT TTGGA TTTTCTATATGCTTA TERM 104 174910 - 174938 + g 88 -6.9 -5.28683 | opp_overlap 174901 174910 174914 ATAAGATATTAACAA TAAATGAGTTACA ACT TGCAATTCATTTA TTTTTTCATGTTCCT NEQ195 175392 - 176558 + | hypothetical protein NEQ194 176901 - 176545 - | hypothetical protein TERM 105 176915 - 176905 - gH 72 -2.6 -5.35815 | opp_overlap 176905 GAGAGCAAACAAAAA TATT GAT AATA TACTTTCTATGGGAA NEQ196 176888 - 177193 + | hypothetical protein NEQ197 177181 - 177591 + | hypothetical protein NEQ198 177596 - 178609 + | hypothetical protein TERM 106 179602 - 179577 - T 76 -7.5 -4.05245 | CATTAGACAATTAAA GCGGGCCCG GCGGGATT CGAACCCGC GACCTACGGCTTAGA NEQ199 180388 - 179657 - | hypothetical protein TERM 107 180291 - 180303 + g 76 -3.5 -5.4505 | CGAGATATTAAATTG TTAAA AGC TTTAA TTTTTTCTTCCACCA NEQ200 180923 - 180381 - | hypothetical protein TERM 108 180703 - 180691 - GR 76 -2.7 -5.41143 | TATTTGGCAAAAAAA TAGAA TAT TCCTA AAGAGTTGTAAAACC rpl12p 181203 - 180895 - | 50S ribosomal protein L12P rpl22p 181267 - 181791 + | 50S ribosomal protein L22P NEQ203 182358 - 181768 - | hypothetical protein NEQ205 182851 - 182387 - | hypothetical protein TERM 109 182996 - 183006 + H 72 -8.2 -3.46336 | overlap 182994 183003 TTTATCAATATTGGG GCCC CTT GGGC TATTTGCATTGCCCT TERM 110 183284 - 183299 + G 73 -7.6 -3.67611 | opp_overlap 183284 183283 ATTATAATAAGAAAG GGGAAT TGCT ATTCCC TTATGTTAGAGTAGA NEQ206 183094 - 183522 + | hypothetical protein NEQ208 183522 - 185135 + | hypothetical protein NEQ207 185616 - 185128 - | hypothetical protein NEQ209 187769 - 185634 - | hypothetical protein TERM 111 186375 - 186386 + g 72 -5.8 -4.40993 | opp_overlap 186374 GGGATCATCAGAATT GCCT TCAT AGGC TTTTACTAATTTATC NEQ210 189403 - 187790 - | prolyl-tRNA synthetase TERM 112 188103 - 188117 + g 71 -2.9 -5.21236 | overlap 188085 TCTAACTCGTTTAGA GAAAT TGTGT ATTTC TTTTTGTTGTCCCTT NEQ212 189419 - 189835 + | hypothetical protein NEQ211 191306 - 189807 - | hypothetical protein NEQ213 191856 - 191290 - | hypothetical protein TERM 113 191704 - 191735 + g 73 -9 -2.81815 | gap 1, opp_overlap 191704, overlap 191701 AATCTCTCTATCCAA TTCCCAAATAA-ATG TTA CATGTTGTTTGGGAA TAATTAATAGTTGGC NEQ214 193333 - 192128 - | hypothetical protein NEQ215 194009 - 193335 - | hypothetical protein NEQ216 194268 - 193996 - | hypothetical protein NEQ217 194470 - 194261 - | hypothetical protein NEQ218 194992 - 194492 - | hypothetical protein rps27e 195189 - 194992 - | 30S ribosomal protein S27e NEQ220 195257 - 195502 + | hypothetical protein TERM 114 195742 - 195731 - g 71 -3 -5.16472 | AAAAAGCTGAAAAAA CTAT AGAA ATAG AAAGCGATTTAGACC NEQ221 195532 - 195828 + | hypothetical protein NEQ222 195858 - 197864 + | hypothetical protein NEQ223 198699 - 197875 - | hypothetical protein TERM 115 199135 - 199162 + G 70 -7.2 -3.5936 | opp_overlap 199139 199140, overlap 199140 TTTAAAAGATATGCG CAAACTTTCTAA AGAT TTAGAAATTTTG TTTGAGCGCTTTAAG TERM 116 199140 - 199157 + G 78 -5.7 -4.87133 | opp_overlap 199139 199140, overlap 199135 AAGATATGCGCAAAC TTTCTAA AGAT TTAGAAA TTTTGTTTGAGCGCT NEQ224 198788 - 199201 + | hypothetical protein TERM 117 199520 - 199500 - g 79 -3.3 -5.53991 | overlap 199510 TATGGAGTAAAAAAA GTTTACCAA TGT TTAGGAAAC CCAGAATTCAAAATA NEQ225 199209 - 199997 + | hypothetical protein TERM 118 200048 - 200036 - g 75 -4.9 -5.04249 | GGGCTAAAAAATAAA CTATT CGA AATAG AGCAAAAATTAAGAG NEQ226 199994 - 200884 + | hypothetical protein NEQ227 200909 - 201118 + | hypothetical protein NEQ229 201106 - 201522 + | hypothetical protein NEQ228 202403 - 201510 - | hypothetical protein NEQ230 205450 - 202400 - | hypothetical protein TERM 119 204873 - 204859 - G 79 -5 -5.13741 | opp_overlap 204859, overlap 204861 GGAATTTAACAAAAA TAGAAG GAT CTTCCA CTTCTTTATATATTA NEQ231 205498 - 205695 + | hypothetical protein NEQ233 205695 - 206219 + | hypothetical protein NEQ232 207111 - 206206 - | hypothetical protein TERM 120 206835 - 206849 + g 85 -5 -5.54403 | overlap 206836 CATATATCGTTGGGT TTCCTT CGT AAGGAG TTTTTATTATTTTTT NEQ234 208010 - 207108 - | hypothetical protein TERM 121 207851 - 207880 + gH 75 -5.1 -4.87626 | opp_overlap 207851 207866, overlap 207852 207853 207854 TGAATTGCAAATTTA TAGCTTTAGCAAA AGCT TTTGCTAAAGTGG TTTTTGCTATTCCAG TERM 122 207854 - 207877 + gH 87 -11.2 -3.32265 | opp_overlap 207851 207866, overlap 207853 207852 207851 ATTGCAAATTTATAG CTTTAGCAAA AGCT TTTGCTAAAG TGGTTTTTGCTATTC NEQ235 207979 - 208752 + | hypothetical protein NEQ236 208820 - 209830 + | hypothetical protein NEQ237 209835 - 210422 + | hypothetical protein TERM 123 210480 - 210466 - g 73 -4.3 -5.03747 | AAATGGGCCAAAAAA TTTGC TAAAG GCAAA ATATTAGAAATCGGA NEQ238 210409 - 210936 + | hypothetical protein TERM 124 211929 - 211917 - g 74 -4.1 -5.30348 | ACCCAAGAAGAAAAA TGGAT ATT ACCCA ATACTATAGTAATAG leuS 210954 - 213887 + | leucyl-tRNA synthetase TERM 125 214336 - 214326 - g 87 -5.4 -5.53288 | GCTAAGGCAAAAAAA TGGA CAG TCCA AGATTTTGTTAATTT TERM 126 215119 - 215131 + G 74 -6.3 -4.51812 | ATAAAAAAGATGATT TCGAA GGT TTCGA TTTATTGTTATACCA NEQ240 213933 - 215513 + | DNA polymerase II small subunit TERM 127 215932 - 215911 - g 73 -8.9 -2.92215 | overlap 215910 CCAATTATAAAAGAG TTACCTTAT TTAG ATAAGGTAA AAGTAAAAATAGAGC NEQ241 215545 - 216123 + | hypothetical protein NEQ242 216154 - 216750 + | 30S ribosomal protein S7P NEQ243 216750 - 217412 + | hypothetical protein NEQ245 217416 - 218228 + | glutamyl-tRNA(Gln) amidotransferase subunit E NEQ244 218561 - 218214 - | peptidyl-tRNA hydrolase NEQ246 219196 - 218546 - | hypothetical protein rps4p 219722 - 219180 - | 30S ribosomal protein S4 TERM 128 219685 - 219701 + g 75 -5.1 -5.06472 | TGCTTTTGCCATGGA TGAGAAG GCC CTTCCCA TTTTCTTCTTTGTCT TERM 129 220021 - 220001 - g 77 -7.7 -3.97926 | opp_overlap 220001, overlap 219996 220002 220017 AGAAGAGAAATAGAA CTTAGCTAT ATA ATAGCTAAA GCTTTAGAGCCAGCA TERM 130 220020 - 220002 - g 73 -9 -2.97129 | opp_overlap 220001, overlap 220001 219996 220017 GAAGAGAAATAGAAC TTAGCTAT ATA ATAGCTAA AGCTTTAGAGCCAGC NEQ248 219770 - 220471 + | exosome complex exonuclease Rrp41 TERM 131 220559 - 220517 - T 79 -10.4 -2.79878 | opp_overlap 220532 220539 220542, overlap 220516 CTTAGCTAGGTAAAG CGCCGGGTTGCGGACCCG GAGATCG CGGGTTCGAATCCCGCCG GGCCCGGATTATTTT NEQ249 221104 - 220568 - | hypothetical protein NEQ250 221737 - 221225 - | hypothetical protein TERM 132 221830 - 221843 + H 100 -9.5 -5.1287 | GAGCGCCGGGCTGTG GCCCC CGAT GGGGC TTTTTTAAATATGGC valS 221873 - 224128 + | valyl-tRNA synthetase TERM 133 225036 - 225009 - gT 73 -7.2 -3.90097 | opp_overlap 225014, overlap 225012 ACTTTACAAAGAGAA CAACACTTTAGT TGAT ACTAAAGTATTA AGAGTAAAAGTAATT TERM 134 225033 - 225012 - gT 71 -6.7 -4.06866 | opp_overlap 225014, overlap 225009 TTACAAAGAGAACAA CACTTTAGT TGAT ACTAAAGTA TTAAGAGTAAAAGTA NEQ254 224014 - 225156 + | hypothetical protein NEQ253 225577 - 225113 - | hypothetical protein TERM 135 225228 - 225241 + g 71 -5.3 -4.62669 | opp_overlap 225228 GATACAATAAAATAG CCAAA TAAT TTTGG TTTGTTCTTTGGTTC NEQ256 225745 - 228105 + | hypothetical protein NEQ255 228643 - 228095 - | hypothetical protein rpl24p 229019 - 228597 - | 50S ribosomal protein L24P NEQ258 229305 - 229048 - | hypothetical protein TERM 136 229518 - 229529 + H 76 -4.4 -5.12617 | GTAGTAAATATTATT CTCT ATGA AGAG TTTTTTAAATAATTA TERM 137 231171 - 231155 - g 72 -5.9 -4.49364 | opp_overlap 231155 AAATTGAAGAAGAAA GAAGTTC AAT AAACTTC TTTGGATTTTATACT NEQ259 229561 - 231621 + | hypothetical protein NEQ261 231618 - 232079 + | hypothetical protein NEQ260 232435 - 232046 - | hypothetical protein NEQ262 232468 - 232659 + | hypothetical protein NEQ264 232649 - 232966 + | hypothetical protein NEQ263 234173 - 232923 - | hypothetical protein TERM 138 233420 - 233444 + g 80 -7.1 -4.68103 | opp_overlap 233419, overlap 233424 TATACAAATAAGCAG GGTATCCTCTC CTA GAGGGGATCTC TTTTCTTAAGGTTGA TERM 139 233424 - 233440 + g 76 -8.7 -3.55261 | opp_overlap 233419, overlap 233420 CAAATAAGCAGGGTA TCCTCTC CTA GAGGGGA TCTCTTTTCTTAAGG TERM 140 233768 - 233795 + g 80 -7.8 -4.3129 | CCATAGGCAAACCTG GGGGGGAAAATA TTGC TATTTTCTGCCC TTTTAATAATGGGTG TERM 141 234048 - 234063 + g 70 -6.2 -4.25104 | opp_overlap 234048 ATAATAGTCAAACAA TAAAGC TAAA GCTTTA TTTTCATAAGCAGCA NEQ265 241066 - 234473 - | hypothetical protein TERM 142 237630 - 237643 + g 74 -3.1 -5.50925 | overlap 237619 TTTGTTCCAGAACTG GAATC TATA GGTTC TTTTTTGTATTCCTT NEQ266 241692 - 241105 - | hypothetical protein NEQ267 242729 - 241689 - | hypothetical protein NEQ268 243607 - 242726 - | hypothetical protein TERM 143 243217 - 243231 + g 71 -8.6 -2.89683 | GAGGCGCCCCGGTAT TGGCTA TTG TAGCCA TGTATAGAGTGGCAT NEQ270 244840 - 243650 - | translation initiation factor IF-2 subunit gamma NEQ271 245958 - 244855 - | hypothetical protein TERM 144 245966 - 245976 + H 70 -4 -4.89852 | TTTTTCATGCTATAT CTAT AGA ATAG TTTTTATAAATATGA NEQ273 246109 - 246651 + | hypothetical protein TERM 145 246849 - 246833 - g 70 -8.1 -3.13081 | opp_overlap 246821, overlap 246821 246832 ATATAATTCTAAAAT TATTGGT TTA ACCAATA CCCATGATAAATTAA NEQ275 246651 - 247775 + | hypothetical protein rps8p 248158 - 247769 - | 30S ribosomal protein S8P TERM 146 249039 - 249051 + G 73 -7.7 -3.70722 | opp_overlap 249038 AGGCCCTCAAGGTAT TGCTG CCG CAGCA TTATATATTGCTGCG NEQ276 248284 - 249231 + | hypothetical protein NEQ277 249770 - 249393 - | hypothetical protein NEQ278 250635 - 249775 - | hypothetical protein TERM 147 250771 - 250761 - g 74 -4 -5.22258 | CAAAGCAAAAGAAAA TAGT AAT ACTA ATGAAAAAAACATTA NEQ279 250706 - 251200 + | hypothetical protein TERM 148 251931 - 251919 - g 74 -6.3 -4.35675 | opp_overlap 251919 AAAAACCTATTAAAA TACCA AGG TGGTA TTTAGATATAACAAA NEQ281 251228 - 252655 + | hypothetical protein NEQ280 253332 - 252634 - | hypothetical protein NEQ282 255448 - 253475 - | hypothetical protein TERM 149 255989 - 256005 + GH 76 -3.7 -5.24129 | ATTATAAATTGGCTA AAAAGGT TAA ACCTTTG TTTTTTGTAAGAGAA NEQ283 255499 - 256305 + | hypothetical protein NEQ284 256280 - 256792 + | hypothetical protein NEQ285 258790 - 256970 - | hypothetical protein TERM 150 258472 - 258484 + g 72 -2.7 -5.35354 | opp_overlap 258467 TAAGCAAAAACAAAA GAAAT TGT GTTTC TTTTTTGGTTCTATA TERM 151 258855 - 258884 + H 93 -9.5 -4.42238 | gap 1, opp_overlap 258861, overlap 258861 TGATTCGATACGAGT TCAAAACC-CCGAA TCT TTTGGAGGTTTTGA TTTTGCTTACAATAA TERM 152 259020 - 259033 + H 71 -5.3 -4.46073 | opp_overlap 259020 ACCAACTATCTCAAA CCATA TTAT TATGG TTTATTCTATTAACA TERM 153 259186 - 259198 + H 80 -4.7 -5.37865 | overlap 259164 259163 ACCCGGGTTCAAATC CCGGC CGG GGCGG TTTTTTCATTCTTAA TERM 154 259749 - 259772 + H 77 -9.6 -3.06708 | overlap 259754 TATTTTATTATGTAT CCCTATTTCG GAGA CGAAATTGGG TATATATATAGATTC NEQ288 260106 - 260354 + | hypothetical protein NEQ290 260680 - 260988 + | hypothetical protein NEQ289 261327 - 260968 - | hypothetical protein TERM 155 261143 - 261129 - G 72 -3.6 -5.1356 | opp_overlap 261130, overlap 261130 TGTTAGTAACAAAAA CGAAAA TGT TTTTCA TATTGGTTTTCCCGT NEQ291 265511 - 261339 - | hypothetical protein TERM 156 263484 - 263470 - G 72 -7.2 -3.7732 | TTTTCATAGTAATAA TAAGGT ATA ACCTTA TGGCCATCTTTGTAT TERM 157 263515 - 263537 + g 74 -6.4 -4.50583 | opp_overlap 263514 TTGATCTCAATAAGG TTTAATCCAA TTC TTGGAGTAAA TTTTATAGTACTATT NEQ292 265672 - 265508 - | hypothetical protein NEQ293 266881 - 265757 - | hypothetical protein TERM 158 266478 - 266468 - G 79 -8.2 -4.13748 | opp_overlap 266468 266467 TGGAAAAACATCAAA CCCC TTT GGGG ATTCTGCATAAACTT TERM 159 266638 - 266661 + g 80 -9 -3.76232 | overlap 266640 AAGTTATAGCTTTTT TGTCCTTTTC CCCA GAAAAGGATA TTCTATATTTAGACA TERM 160 266640 - 266659 + g 80 -9.4 -3.46008 | overlap 266638 GTTATAGCTTTTTTG TCCTTTTC CCCA GAAAAGGA TATTCTATATTTAGA NEQ294 268246 - 267116 - | hypothetical protein NEQ295 269115 - 268243 - | hypothetical protein TERM 161 269223 - 269211 - g 82 -7.7 -4.52589 | overlap 269214 CTGTTTTATATAAAA GAAGG AAA CCTTC CCCAGCAAAATGTGC NEQ297 269150 - 269401 + | hypothetical protein NEQ296 269825 - 269367 - | hypothetical protein NEQ298 270507 - 269818 - | hypothetical protein TERM 162 270389 - 270417 + g 89 -7.6 -5.12617 | overlap 270384 270390 AAATCGCCTACTCTT TCTATAGAGTTT TGGGC AAACTCTATAGC TTTTTTCCATAATTC TERM 163 270390 - 270416 + g 89 -11.1 -3.66486 | overlap 270384 270389 AATCGCCTACTCTTT CTATAGAGTTT TGGGC AAACTCTATAG CTTTTTTCCATAATT TERM 164 270437 - 270448 + g 71 -2.2 -5.33405 | TTCCATAATTCTATA GGGT TTAC ATCC TTTTTCTTTAATAGC NEQ299 272231 - 270507 - | putative ATPase RIL TERM 165 273529 - 273501 - g 74 -5.4 -4.88326 | opp_overlap 273506, overlap 273502 AAAGAAAAAGTAAAA GTATACGCATCT GGAGA AGATGCATATAT AAAACTACCATTAGT TERM 166 273528 - 273502 - g 78 -8.9 -3.49335 | opp_overlap 273506, overlap 273501 AAGAAAAAGTAAAAG TATACGCATCT GGAGA AGATGCATATA TAAAACTACCATTAG NEQ300 272316 - 275141 + | hypothetical protein NEQ301 275553 - 275146 - | hypothetical protein gltX 275497 - 277185 + | glutamyl-tRNA synthetase NEQ303 277214 - 277471 + | 50S ribosomal protein L35Ae NEQ304 277468 - 277665 + | hypothetical protein NEQ305 277847 - 278290 + | hypothetical protein TERM 167 278828 - 278818 - gT 80 -6.8 -4.69868 | overlap 278820 AGACAATAAAAAGAA TCCC CTT GGGA AGGTTAGGGAAACCT NEQ306 278262 - 278930 + | hypothetical protein NEQ307 279572 - 279045 - | hypothetical protein NEQ309 279649 - 280062 + | hypothetical protein NEQ308 281498 - 280044 - | seryl-tRNA synthetase NEQ310 281526 - 281954 + | hypothetical protein NEQ312 281951 - 282436 + | hypothetical protein rpl30p 282889 - 282422 - | 50S ribosomal protein L30P NEQ314 283002 - 283250 + | hypothetical protein NEQ313 283646 - 283245 - | hypothetical protein NEQ316 283658 - 284254 + | hypothetical protein NEQ315 285017 - 284247 - | hypothetical protein NEQ317 285430 - 285014 - | hypothetical protein TERM 168 285676 - 285662 - g 76 -8.6 -3.53343 | AATTTCTTTGGCAAA CCTTCT GTA AGAAGG ATAGGAAATATAAAA NEQ318 285479 - 287584 + | hypothetical protein rpl7ae 287613 - 287990 + | 50S ribosomal protein L7Ae NEQ321 287987 - 288427 + | hypothetical protein NEQ320 288622 - 288404 - | hypothetical protein NEQ322 288671 - 288898 + | hypothetical protein TERM 169 289376 - 289349 - g 86 -10 -3.6135 | opp_overlap 289348 AAAGAGATTGGGAAA GAGCTTTATGAT GTTT ATCTTAAAGCTC GTAATTCACAGGACT NEQ324 288899 - 289417 + | hypothetical protein NEQ323 289787 - 289368 - | translation initiation factor IF-2 subunit beta NEQ325 290425 - 289796 - | hypothetical protein TERM 170 290535 - 290519 - g 82 -5.1 -5.37345 | TGCAATGATAAAAAA TGCCCAC ACC ATGGACA TCTAAAAGTTAGGGG rps17p 290465 - 290806 + | 30S ribosomal protein S17P TERM 171 290959 - 290945 - g 79 -10 -2.95113 | overlap 290944 TTGCAAAAGTCAAAG CCCCAA CAA TTGGGG AACTAAAAGATTTAA TERM 172 290999 - 291025 + G 74 -7.4 -3.97307 | opp_overlap 290994 290993 AGATAAGAACCATTC CTGGAGTAGA AATGACC TCTACTCTAG TTGTTGTTGAGTAAC NEQ328 290803 - 291039 + | hypothetical protein NEQ327 291501 - 291022 - | hypothetical protein NEQ329 291970 - 291473 - | hypothetical protein NEQ330 292908 - 291967 - | hypothetical protein TERM 173 292788 - 292817 + g 73 -8 -3.38272 | opp_overlap 292781 292787 292792 292802 TTGTGAAACTATAAT TATAGGCTGTAT AAGCCG ATACAGCCAATA TTATCCCTGCTGCTA TERM 174 292813 - 292792 - G 72 -8.8 -3.00601 | opp_overlap 292788, overlap 292787 292802 GAAACTATAATTATA GGCTGTAT AAGCCG ATACAGCC AATATTATCCCTGCT TERM 175 293272 - 293253 - g 84 -3.6 -5.74684 | overlap 293254 GAAGAAAAAGAAAAA CCTATTGA AGAG CCAATAGA AGAAAAAATCGATTT NEQ331 293211 - 293480 + | hypothetical protein TERM 176 293496 - 293510 + G 71 -8.6 -2.94466 | opp_overlap 293495 293496 GCGAAAAGAAAGAAC CTGCTA ATA TAGCAG TATACTTAATAGCTT TERM 177 293510 - 293496 - g 74 -8.6 -3.24954 | opp_overlap 293496, overlap 293495 GCGAAAAGAAAGAAC CTGCTA ATA TAGCAG TATACTTAATAGCTT NEQ332 293477 - 294319 + | hypothetical protein TERM 178 294317 - 294329 + F 82 -3.4 -5.60993 | opp_overlap 294317 TCAATATGTTTTAAA TAGG ATAGA CCTA TTTTTTTATGAAAGA TERM 179 294738 - 294724 - g 83 -5.8 -5.26155 | AGAGAAAGAGAAAAA TTCAAA TCC TTTGAA GATATAGAGAAAAGA NEQ334 294337 - 294855 + | hypothetical protein NEQ333 295471 - 294842 - | hypothetical protein NEQ335 296003 - 295458 - | hypothetical protein NEQ336 296818 - 295994 - | hypothetical protein TERM 180 296329 - 296301 - G 74 -6.1 -4.40333 | opp_overlap 296301 296305, overlap 296305 TCCAAATAATACAAA GAAAGCAAATCTA AAA TATATTTGCTTAC TATATATTCGTCTCC TERM 181 296325 - 296305 - G 71 -5.5 -4.72277 | opp_overlap 296305 296301, overlap 296301 AATAATACAAAGAAA GCAAATCTA AAA TATATTTGC TTACTATATATTCGT NEQ338 296866 - 297063 + | DNA-directed RNA polymerase subunit N NEQ337 297631 - 297050 - | hypothetical protein NEQ340 297849 - 298418 + | hypothetical protein NEQ339 298865 - 298392 - | hypothetical protein TERM 182 298770 - 298756 - G 77 -4.3 -5.28176 | opp_overlap 298756 298749 CCTATGGATAAAAAA GCAAT AATAA ATTGC TCTTTTATTATATCC NEQ341 299977 - 298862 - | DNA primase NEQ342 301024 - 299999 - | hypothetical protein TERM 183 301354 - 301344 - g 80 -5.4 -5.22289 | opp_overlap 301344 GAGGAAAGAGAAAAA CGAA TAT TTCG TTAATGTAGGAGAGA NEQ344 301096 - 301506 + | hypothetical protein NEQ343 302014 - 301496 - | hypothetical protein NEQ345 303954 - 302044 - | anaerobic ribonucleoside triphosphate reductase NEQ345a 305006 - 304107 - | hypothetical protein NEQ346 305229 - 304993 - | hypothetical protein NEQ347 306059 - 305259 - | hypothetical protein NEQ348 306309 - 306082 - | hypothetical protein NEQ349 308137 - 306335 - | ATP-dependent protease Lon TERM 184 307506 - 307527 + g 86 -10.1 -3.61356 | ACAACTCTATGGTGG GCAGGGGTT TCTA AACCCCCGC TTTGGAATGGGTCAT NEQ350 308474 - 308163 - | hypothetical protein NEQ351 308722 - 308931 + | hypothetical protein TERM 185 309250 - 309288 + G 74 -3.2 -5.42198 | opp_overlap 309250 TTTTGGGGATAATAA CCTATTTTATTGCAAGGA AAA TCCCTATAATACAATGGG TTTTATTTTTTGCAA NEQ352 309033 - 309662 + | hypothetical protein NEQ353 309789 - 311573 + | hypothetical protein TERM 186 311573 - 311593 + T 71 -3.3 -5.10064 | opp_overlap 311573, overlap 311563 ATTATTAGCAAATTA GCTATTTCA TTT TAAGATAGC TTTTTATATATTCCA NEQ354 311819 - 311574 - | hypothetical protein NEQ356 311847 - 312266 + | hypothetical protein NEQ355 312537 - 312259 - | hypothetical protein TERM 187 312946 - 312931 - gR 76 -2.6 -5.47159 | overlap 312932 TTGGAATATAAAAAA TTGTAT GGCT ACACAA TTACACATGGGCATA NEQ358 312526 - 313245 + | hypothetical protein NEQ357 313666 - 313232 - | hypothetical protein rps28e 313932 - 313666 - | 30S ribosomal protein S28e TERM 188 313973 - 313961 - H 71 -6.3 -4.13282 | ACTATATTTTTAAAA CCTTA ATG TAAGG CCTACAAAATGGGTA rpl2p 313982 - 314698 + | 50S ribosomal protein L2P NEQ360 315971 - 314673 - | hypothetical protein TERM 189 315740 - 315750 + g 72 -2.4 -5.37865 | opp_overlap 315740 TTTTTCCAATAATTA GGGC ATT GGCC TTTTTTAATTGTTCG TERM 190 316007 - 315994 - H 70 -2.3 -5.36314 | CAAAATATTAAAAAA TCAGC AGCG GCAGA AACTCTTCACTAATC NEQ362 316076 - 316846 + | hypothetical protein NEQ363 316877 - 317149 + | chromatin protein NEQ364 317390 - 317151 - | hypothetical protein TERM 191 317252 - 317266 + g 75 -5 -4.98616 | TCCATATGAATTTAT TTAGCT CTT GGCTAA TTTTTACTATTTTCG NEQ365 318866 - 317694 - | hypothetical protein TERM 192 317765 - 317784 + g 82 -5 -5.48028 | TTTCTAATTCTTTTA GCAATTGT TTTA ACATTTGC TTTTGTTTTTCTTTA TERM 193 318642 - 318653 + g 74 -3 -5.41787 | TTTAGCAATACAATC GTTT CCAA AAAC TTTTTCTATTTTTTC NEQ366 319626 - 318940 - | hypothetical protein TERM 194 319033 - 319044 + g 80 -5.8 -5.10497 | TGCTGTATCTCGTAA TGGC ATGC GCCA TTTTTTGGATAACTT NEQ367 320206 - 319619 - | hypothetical protein TERM 195 321237 - 321221 - g 81 -4.5 -5.38054 | GTTTAGAAACAAAAA TGCATAT AAT ATATACA GGTATACCACAAACC NEQ368 320437 - 321318 + | hypothetical protein TERM 196 321474 - 321460 - g 72 -7.2 -3.91028 | opp_overlap 321459 AAGGCAAAGCAATAA TAGTAG TTC CTACTA GAATTTTGGTTGAAC TERM 197 321854 - 321828 - g 77 -3.8 -5.40072 | opp_overlap 321830 321832 CCCTCTTTAAAAAAA TATATCCCTAAT TGG ATTGGCGATATA TATGAAGCGCCTTTG TERM 198 322545 - 322510 - g 76 -3.5 -5.44721 | gap 1 ACTATTTCAAAAAAA GCTCTGTTCATCAAAT AATAA ATCT-ATTAACAGAGC CATTAACTAAAGATA NEQ369 321315 - 322937 + | hypothetical protein NEQ370 323609 - 323064 - | DNA-directed RNA polymerase subunit E' NEQ372 323644 - 324240 + | hypothetical protein NEQ371 325015 - 324233 - | hypothetical protein NEQ373 325343 - 325116 - | hypothetical protein TERM 199 325974 - 325962 - g 72 -3.3 -5.1523 | overlap 325963 TCTATAATACAAAAA TGGGT TGA ACCCG GGAGAGATAAAATTA NEQ375 325602 - 326285 + | 30S ribosomal protein S3Ae TERM 200 326343 - 326320 - f 71 -3.2 -5.08169 | opp_overlap 326341, overlap 326341 ATATACTTTAAAAAA TGCTATTTAT CCAA ACAAAAAGCA ATACTTTTTTGCTTT TERM 201 326355 - 326341 - f 72 -2.8 -5.30616 | opp_overlap 326341 326349, overlap 326320 TTATCCAAACAAAAA GCAATA CTT TTTTGC TTTAAAAATATCATT NEQ376 326455 - 326982 + | hypothetical protein NEQ377 327013 - 327333 + | hypothetical protein NEQ378 328872 - 328225 - | hypothetical protein rpl19e 328987 - 329430 + | 50S ribosomal protein L19e NEQ380 329427 - 330944 + | hypothetical protein NEQ381 330966 - 331703 + | hypothetical protein TERM 202 332218 - 332230 + G 77 -4.1 -5.35224 | GGATAAATATGATAT CTCTA TAG TAGGG TTTTCTTTTTATACC NEQ383 331796 - 332881 + | hypothetical protein NEQ382 333908 - 332847 - | tRNA-modifying enzyme TERM 203 332952 - 332972 + gF 78 -6.9 -4.38092 | opp_overlap 332952 ATCGTAATCTATATA TTCGCTTAA TTT TTTAGCGAA TTCTTTTACTTCTTC TERM 204 332987 - 333000 + gF 82 -3.1 -5.66229 | ATTCTTTTACTTCTT CATGT GTAG GCATG TTTTTTATTGTTAGT TERM 205 333699 - 333715 + gF 76 -3.7 -5.26119 | overlap 333701 333709 TATTCCATAGAATTT GTTTTTG TAG CAAAATC TTTTGTTTTTCAAAG TERM 206 334499 - 334477 - gH 76 -6.4 -4.6265 | overlap 334478 ATAATAATGAGAAAA CTTATTACGC AAG GCATAATAAA TAGCAGGGAAGCCAA NEQ384 333862 - 334560 + | hypothetical protein TERM 207 334766 - 334756 - g 81 -4.6 -5.38321 | overlap 334763 334764 AAATAGTAGAAAAAA GGGA AAA CCCC TATAAGGGAGAAGAA TERM 208 334775 - 334763 - g 71 -5.5 -4.55016 | overlap 334756 334764 AGAAAAAAGGGAAAA CCCCT ATA AGGGA GAAGAATCCAAAGAT NEQ386 334635 - 334991 + | hypothetical protein NEQ385 335330 - 334965 - | hypothetical protein NEQ387 335454 - 337457 + | Hef nuclease rps5p 338192 - 337497 - | 30S ribosomal protein S5P NEQ389 339353 - 338223 - | tyrosyl-tRNA synthetase TERM 209 340056 - 340066 + Gr 82 -5.4 -5.21709 | TCAAAATACCGGGGA TAGC GAT GCTA TTTTTTAGTATAGCG NEQ391 343141 - 340103 - | hypothetical protein NEQ392 339701 - 340183 + | hypothetical protein TERM 210 341089 - 341099 + gT 93 -6.8 -5.33848 | TTTCTCCAACCACTT TGGC ATA GCCA TTTTTTACTTCTAAT NEQ393 343613 - 343170 - | translation initiation factor IF-5A TERM 211 343336 - 343351 + g 72 -2.6 -5.49569 | gap 1, overlap 343324 343323 343322 TCTACTTCTCCTTGT GGAGAAG GTA CTT-TCC TTTTTTCTGTTGCTA TERM 212 343996 - 343979 - g 75 -4.9 -4.98672 | CTGAAAAATATAAAA TTATCGC TGAA GCAATAA TAAATAGGCTAAACG TERM 213 344567 - 344554 - g 75 -2.4 -5.54264 | opp_overlap 344554 AAACATGGAAAAAAA GCTA AAGCCA TAGC TTTCAAAGAGTTAAG NEQ396 343651 - 344637 + | hypothetical protein NEQ395 345807 - 344626 - | hypothetical protein TERM 214 345702 - 345714 + g 72 -3.4 -5.23943 | CTATTATTACAGGCC TCCT AAAGA AGGA TTTGTTTTTTTGATA NEQ397 346312 - 345800 - | 50S ribosomal protein L21e NEQ398 346125 - 346763 + | hypothetical protein NEQ399 346764 - 347618 + | methionine aminopeptidase NEQ401 347905 - 348897 + | hypothetical protein NEQ403 349065 - 349715 + | hypothetical protein NEQ402 350635 - 349712 - | putative deoxyhypusine synthase TERM 215 349902 - 349918 + g 70 -7.3 -3.57144 | TTGGAAAATTGAGCC CACCATA TTG TGTGGTG TTTAGAGATACCCCC NEQ404 353787 - 350635 - | hypothetical protein TERM 216 351195 - 351206 + gr 74 -3 -5.24531 | opp_overlap 351202, overlap 351193 351202 CTTTGTCTTCGTATT CTTT AAAG AAAG TTTTTTCTGGGAACT TERM 217 352058 - 352068 + gr 71 -3.2 -5.14965 | CTATATATCTTTAAT CCAT ACT GTGG TTTTTTAATAAACAT TERM 218 352218 - 352241 + gr 76 -2.6 -5.40072 | opp_overlap 352223 TCCCCTCACAACTGC TAAAATATAT ATTA ATATAGTTTA TTTTTTTGCAAACAG TERM 219 353200 - 353217 + gr 76 -2.7 -5.56673 | overlap 353190 353189 TTCCGGTATGCTATT TAAATCG CATA CGATTTC TTTTTTATTATCGCT NEQ405 354517 - 353756 - | translation initiation factor IF-2 subunit alpha TERM 220 354490 - 354501 + gr 71 -3 -5.05116 | CTATATATTCTCCAA CATT AGGT AATG TTTTCTTCTTTATCA NEQ406 355404 - 354514 - | hypothetical protein NEQ408 355436 - 355912 + | hypothetical protein NEQ407 356505 - 355903 - | hypothetical protein TERM 221 356592 - 356602 + r 76 -4.6 -5.06961 | overlap 356569 GGTTCGAATCCGGGC GGGG CTA CTCC TTTATTTTTCTTAAT NEQ409 357378 - 356596 - | hypothetical protein TERM 222 357375 - 357398 + g 72 -6 -4.51238 | AATTCTCTATTTCAA CCATTCTTTC TTAG GACGGAATGG TTTATATTTTATACC NEQ410 358754 - 357366 - | hypothetical protein NEQ411 359117 - 359446 + | hypothetical protein NEQ412 360798 - 359467 - | hypothetical protein TERM 223 359553 - 359567 + g 79 -10 -2.93382 | TTGCCCTATTAGCTA TCGCTG GCC CAGCGA TATCTAAATGTAGGA NEQ413 360845 - 361135 + | hypothetical protein NEQ415 361132 - 361713 + | hypothetical protein NEQ414 362396 - 361698 - | hypothetical protein TERM 224 362178 - 362216 + g 86 -11.3 -2.91873 | gap 1, opp_overlap 362184, overlap 362176 362184 TTGTGTTGTTGGTTC GGAAAAGGGC-TTTATAT CTAA ATATATATGCCCTTTTCC TGGTTTAGCAGTAAT NEQ416 362731 - 362393 - | hypothetical protein TERM 225 362581 - 362591 + g 75 -8.2 -3.59262 | TTTCGTAATCATTTT CCCC TAC GGGG TTTCCACATATAAAA TERM 226 362684 - 362694 + g 70 -4 -4.95618 | TAACCCCATGGCTTT TAGA TTG TCTA TTTCTTTTTCCTCTT NEQ417 364320 - 362782 - | glycyl-tRNA synthetase NEQ418 365603 - 364338 - | hypothetical protein TERM 227 366050 - 366066 + G 76 -8.7 -3.55801 | overlap 366063 GGTTATATAACTATG GGAGTTG TCT CAGCTCC TTTGGAGGGGTTAGT TERM 228 367546 - 367524 - g 70 -6.4 -4.18042 | opp_overlap 367530 TTTATATAAACGAAA GTATGACAAA ATC TTTGTTATAC CAATTAGATAATCTA TERM 229 367720 - 367730 + G 70 -8.2 -3.15503 | overlap 367717 AGAAATGACTGGTAG GCCC CAT GGGC TATTCCCTGTTGGAG NEQ420 365708 - 369439 + | DNA polymerase II large subunit NEQ419 369965 - 369426 - | hypothetical protein NEQ421 370202 - 370894 + | hypothetical protein NEQ422 370891 - 371544 + | diphthine synthase NEQ424 371519 - 371896 + | hypothetical protein NEQ423 373187 - 371886 - | hypothetical protein TERM 230 372881 - 372895 + g 72 -3.6 -5.1356 | overlap 372891 TATCTGCTCTAATAA CTTTTA TTT TGAAAG TTTTTCTTGGTAGCC TERM 231 372943 - 372953 + g 70 -4 -5.01535 | GCATATTTTTTTATT GATT CTA AATC TTTTTCTACTTCTAA TERM 232 373077 - 373087 + g 71 -3.2 -5.14985 | TTTTAACACATCGTA GGGA ACT TTCC TTTTTATATCTTTAA NEQ425 375321 - 373177 - | hypothetical protein TERM 233 374320 - 374306 - G 79 -8.6 -3.9392 | TTGGATTCCAAATAA CCATAC TCT GTATGG TAGACAAATATAGGG TERM 234 375255 - 375281 + g 85 -4.7 -5.69473 | gap 1, opp_overlap 375260, overlap 375241 375256 375257 375260 TTAATGGTATGTCAT TA-TAATTGTTG GCAT CAACAATTACTA TTTTTTTATCCTCTG TERM 235 375257 - 375278 + g 77 -8.9 -3.2694 | opp_overlap 375260, overlap 375256 375255 375260 AATGGTATGTCATTA TAATTGTTG GCAT CAACAATTA CTATTTTTTTATCCT radA 376375 - 375398 - | DNA repair and recombination protein RadA NEQ427 377521 - 376397 - | DNA-directed RNA polymerase subunit A'' TERM 236 376925 - 376935 + g 72 -2.6 -5.42198 | AACCCCTTTTATATG TAAA TCT TTTA TTTTGTTTTTTAACA NEQ428 378041 - 377727 - | hypothetical protein NEQ429 378465 - 378010 - | hypothetical protein TERM 237 378289 - 378302 + gH 71 -2.3 -5.33405 | opp_overlap 378289 TTCTTCATAATAAGA GCGAG CATC CTCTC TTTTTGTTTCATCCA NEQ430 378494 - 379786 + | replication factor C large subunit TERM 238 379966 - 379949 - g 76 -3.5 -5.34555 | overlap 379951 TGATATGATAAAAAA TAGTAAT CATT ATTACCA AATTAGGGGGATAAT NEQ431 379770 - 380366 + | hypothetical protein TERM 239 380775 - 380787 + G 78 -9.1 -3.54721 | overlap 380774 AACATGGTAGGCATG CCCCT AGA AGGGG TTCTATGGGATTTTG TERM 240 381618 - 381602 - g 82 -7.9 -4.36063 | ACAATATTATTAAAA GGCTCTG TTC CAGGGCC AAGAAAAAGACTAAT rpl3p 380753 - 381718 + | 50S ribosomal protein L3P NEQ432 382305 - 381715 - | hypothetical protein TERM 241 382372 - 382356 - R 73 -8.7 -3.29704 | opp_overlap 382354 382356, overlap 382354 382352 TGGTTAGCAAATACA TGCCCAC AAT ATGGGCA TCTTAATAGTTTTAT TERM 242 382356 - 382372 + r 70 -8 -3.25714 | opp_overlap 382356 382354 382352, overlap 382354 TGGTTAGCAAATACA TGCCCA CAATA TGGGCA TCTTAATAGTTTTAT NEQ434 384209 - 382482 - | hypothetical protein TERM 243 384000 - 384014 + g 71 -2.9 -5.30575 | opp_overlap 384000 TACAGCTTTGTAAAA GAATT CTTCA AATTC TTTTTTGGCTTTTTC NEQ435 384993 - 384271 - | hypothetical protein NEQ436 386395 - 384998 - | hypothetical protein NEQ437 387147 - 386392 - | preprotein translocase subunit SecF TERM 244 386755 - 386722 - G 71 -6.8 -4.03204 | overlap 386714 TATTAAATTTAGAAA GGCTAAAGTATCTA TAACAT TAGATACTAAAGCC AATATCGTTAATGCC TERM 245 387238 - 387227 - g 74 -5.8 -4.63218 | opp_overlap 387227, overlap 387208 TTTGCTCGAAGAAAA CCCT ATCG AGGG TTATATAGAAAAAAT TERM 246 387542 - 387530 - g 72 -4.9 -4.92314 | ATTAACTGACAAAAA CAATA CAA TATTG GAAACTAATATAACG NEQ438 387180 - 388178 + | hypothetical protein NEQ440 388175 - 389062 + | hypothetical protein NEQ442 389084 - 391411 + | hypothetical protein NEQ441 391950 - 391408 - | hypothetical protein NEQ443 392485 - 391916 - | hypothetical protein NEQ444 392551 - 393300 + | hypothetical protein TERM 247 393812 - 393788 - g 72 -5.7 -4.41897 | opp_overlap 393787 AAGAAACGATCAAAA CGAATGGGAAT AGC ATAACCATTCG AGTTATGGATGTACA NEQ445 393310 - 393882 + | hypothetical protein TERM 248 394266 - 394245 - f 95 -14.5 -3.28497 | opp_overlap 394258 GTAGCCCAAACTGAA TCCCGTAGG GAAA CCTACGGGA GATGTGGGGTTGTTG TERM 249 394417 - 394396 - f 75 -10.1 -2.62983 | GCCACTTCCAGAGTA CCGCGCC TCGGATAT GGCGCGG GAAGCTGGGGGACAC TERM 250 394596 - 394583 - f 72 -9.5 -2.60075 | overlap 394582 CCCCGGGCAAGGAAC CCCCG GCGA CGGGG TAGTACTTGCCCGGG TERM 251 394738 - 394711 - f 83 -10.4 -3.29324 | opp_overlap 394715, overlap 394706 CGTAGGGAAACCGAA GGCCCGCAGCCC TTAT GGGCGAGGGGCC GCGTCCTATACGGGC TERM 252 395399 - 395381 - f 73 -7.4 -3.80573 | overlap 395393 395394 GTGAGTAGGAGCAAA GAGGGG TGAGAAG CCCCTC CGCCGAAAGGGAAAA TERM 253 395674 - 395637 - f 86 -10.3 -3.56099 | overlap 395628 395627 GAGAACCGGCCTAAA CCCGGGACGGGGCCCCC GTAT GGGGGCTTCGGCCGAGG CCCTGGGCCCATGAA TERM 254 396247 - 396228 - f 83 -10.6 -3.18264 | GCGGGGAGCGATGAA CCGGCCCC TCCG GGGGTCGG GGATGCGCCCATGAG TERM 255 396296 - 396283 - f 77 -9.5 -3.28712 | overlap 396266 CGCCGTGGGGGACAA CGGGG CTAA CCCCG AAAGGGGGACAGCGG TERM 256 396592 - 396630 + F 83 -11.1 -3.04322 | gap 2 CCTCGATGTCGGCTC TTCTCACCC-TGGCCG-TG CAG CAGCGGCCAAGGGTGGGGG TGTTCACCCATTAAA rps9p 397016 - 397426 + | 30S ribosomal protein S9P NEQ448 397402 - 397779 + | hypothetical protein NEQ447 398209 - 397739 - | hypothetical protein NEQ449 398666 - 398172 - | hypothetical protein rpl10e 399279 - 398719 - | 50S ribosomal protein L10e NEQ451 399328 - 399840 + | hypothetical protein TERM 257 400476 - 400460 - g 78 -5.9 -4.91852 | TGGAGGAAAAAGAAA TATTGCC TTT AGCAATA GATGTTTTCGTTAAT NEQ452 399847 - 400530 + | hypothetical protein NEQ453 400523 - 401254 + | hypothetical protein NEQ454 402309 - 401263 - | H/ACA RNA-protein complex component Cbf5p NEQ455 402648 - 403460 + | hypothetical protein TERM 258 404374 - 404362 - g 72 -4.9 -4.90869 | AGTACTAACGAAAAA GATTT AGA AAATC ATATAAAAGAATACG TERM 259 405699 - 405680 - g 81 -2.9 -5.80003 | GCAATAAACAAAAAA CCTTAGT TGGGGG ACTAAAG CAATATTATAAAAAA NEQ457 403546 - 405876 + | hypothetical protein NEQ456 406591 - 405851 - | hypothetical protein TERM 260 406782 - 406766 - g 78 -2.3 -5.84432 | overlap 406767 406779 GATAATACAAAAAAA TGAATTT AAC AAATTCC ATACTATAGGGAAAA NEQ458 406638 - 407576 + | hypothetical protein TERM 261 407616 - 407577 - T 93 -9.2 -4.36508 | gap 1, overlap 407579 GTAGAAAAAGAATAA TGGGCCCGCGGGGATTCGA ACC CCGGACCTCCG-GGACCCA AACCCGGCGTCCTAG NEQ459 408399 - 407680 - | hypothetical protein NEQ460 408446 - 409198 + | hypothetical protein TERM 262 409261 - 409247 - T 73 -9.2 -2.87344 | CATCGGGGGCAGACA CCCGGA GGT CCCGGG TTCGAATCCCGGCGG NEQ461 409771 - 409289 - | hypothetical protein TERM 263 410713 - 410699 - g 70 -4.3 -4.78572 | GTGCAAGTAATAAAA TAAGC GGTTT GCTTA AAGCAATACATAGTG NEQ462 409864 - 411900 + | hypothetical protein NEQ464 411930 - 412772 + | hypothetical protein NEQ463 413944 - 412751 - | translation-associated GTPase TERM 264 414169 - 414159 - g 72 -2.6 -5.33785 | AATTATTAGAAAAAA TAAA CGC TTTA CCAAAAATAGAGTAT NEQ466 413981 - 415315 + | hypothetical protein rps13p 415778 - 415317 - | 30S ribosomal protein S13P NEQ468 417006 - 415810 - | hypothetical protein NEQ469 417163 - 417546 + | 30S ribosomal protein S8e NEQ470 418091 - 417669 - | hypothetical protein NEQ471 418539 - 418063 - | hypothetical protein TERM 265 418521 - 418538 + gr 70 -4.2 -4.74084 | opp_overlap 418516 418521, overlap 418516 CAATCAAAAATAGTA TGAAAC TATATT GTTTCA TTTTGATTTTCCTTT NEQ472 419146 - 418526 - | hypothetical protein TERM 266 419208 - 419175 - H 79 -3.8 -5.54338 | gap 2, opp_overlap 419195 TAAGCAAAATAAAAA CGGGC-AGC-CACGGG GAAC CCCGCATGCTAGGCCG CTACACCACGGGGCT NEQ473 419350 - 420414 + | cell division protein FtsZ NEQ475 420494 - 422974 + | hypothetical protein NEQ474 423477 - 422962 - | hypothetical protein NEQ476 424315 - 423464 - | hypothetical protein TERM 267 424333 - 424345 + r 80 -2.7 -5.68438 | TAGAAATTGCTTAAA CATTT AAT AAGTG TTTTTTATTTACTAA NEQ477 424703 - 424350 - | hypothetical protein NEQ478 425397 - 424693 - | 30S ribosomal protein S4e pheT 426943 - 425420 - | phenylalanyl-tRNA synthetase subunit beta TERM 268 427085 - 427073 - g 80 -7.7 -4.23486 | AATTAGCTAAAATAA TGCCT GCA AGGCA AAGGAGAACCTTATT rps19p 426979 - 427401 + | 30S ribosomal protein S19P NEQ481 428305 - 427595 - | hypothetical protein NEQ482 428382 - 428801 + | hypothetical protein NEQ483 428798 - 429103 + | hypothetical protein NEQ485 429155 - 429667 + | hypothetical protein NEQ484 430123 - 429662 - | hypothetical protein NEQ486 431049 - 430123 - | hypothetical protein rps15p 431488 - 431024 - | 30S ribosomal protein S15P TERM 269 431406 - 431417 + gr 75 -7.2 -4.14859 | TCTTTATCATATGGG GCCC ATTC GGGC TTTGTAGTTCTTAAT NEQ489 431876 - 431520 - | 50S ribosomal protein L18e TERM 270 432263 - 432310 + H 76 -6.3 -4.63218 | gap 1, overlap 432262 432263 432299 432300 CATTTTTCTTTGCGG CCGTG-CTCCCTGGGTCC CCGAGTGGGATAA GGGCCCAGGGAGGCGGGG TTTTATTCCCCCGCA TERM 271 432263 - 432308 + H 75 -9.8 -2.62244 | gap 1, overlap 432262 432263 432299 432300 CATTTTTCTTTGCGG CCGTGCTCCCTGGGTCC CCGAGTGGGATAA GGGCCCAGGGAG-GCGG GGTTTTATTCCCCCG TERM 272 432736 - 432760 + H 100 -15.7 -4.10657 | overlap 432735 GGGGGGACGGAGAGT GCCGGAGGGCG TTA TGCTCTCCGGC TTTTGGGGAGTGTAA TERM 273 432923 - 432903 - H 77 -8.9 -3.53012 | overlap 432904 GTGGCTCCGGTGAAA TCCTCGGGC TCA ACCCGAGGG CGCGCCGGAGCTACT TERM 274 432922 - 432904 - H 86 -12.4 -2.71712 | overlap 432903 TGGCTCCGGTGAAAT CCTCGGGC TCA ACCCGAGG GCGCGCCGGAGCTAC TERM 275 433412 - 433394 - H 75 -8 -3.794 | TGTTAAGTCAGGAAA CAGGCGAG ACC CGCGCCCG CAGTTGCGACGGCCG TERM 276 433812 - 433793 - H 72 -9.2 -2.63257 | overlap 433790 AGTCGACACAAGGTA GCCGTAGG GGAA CCTGCGGC TGGATCACCTCCTAG TERM 277 433924 - 433938 + H 72 -5.8 -4.38927 | CGTTAGGATTAGCCC TAATTG GCA CAATTA TTTCTTCTATAAAAA TERM 278 434749 - 434761 + G 70 -6.3 -4.24948 | ACAACAAAATTTTTA CCAAT ACT ATTGG TTTTAGGTATAATAG NEQ490 434260 - 435666 + | hypothetical protein NEQ491 435677 - 436618 + | hypothetical protein NEQ492 437393 - 436704 - | hypothetical protein NEQ493 438387 - 437443 - | hypothetical protein NEQ494 439433 - 438384 - | hypothetical protein NEQ495 440923 - 439439 - | hypothetical protein TERM 279 441370 - 441358 - g 72 -4.8 -4.80289 | ATAAAATAGACAAAA TCCC TGGAT GGGA ATCAAGAGAAGGATC TERM 280 441410 - 441398 - g 74 -4.1 -5.24531 | ATCTTTCATAAAAAA TTACC AAA GGCAA AGTGATAGGGCGAAA TERM 281 441460 - 441478 + G 73 -7.5 -3.60805 | TATACAATTTAGTTT CCCAATT ATATG AATTGGG TTTCGAATCGGATAT NEQ498 440955 - 442679 + | translation initiation factor IF-2 TERM 282 442672 - 442661 - T 89 -7.2 -5.22137 | AATGAGAAAACAAAA CCCC ACTT GGGG GCTCTAAATTAGGTC NEQ497 443179 - 442676 - | hypothetical protein TERM 283 442868 - 442854 - G 86 -7.2 -4.77778 | opp_overlap 442854 AACAAATACACAAAA TAAGCT ATA AGCTTA TTGGCTATTGATTGC TERM 284 442871 - 442895 + g 70 -8 -3.1012 | overlap 442869 AGCTATAAGCTTATT GGCTATTGAT TGCTT ATCAATAGTC TGGTTTTCGCAATTT NEQ499 443207 - 443608 + | hypothetical protein NEQ500 443677 - 444747 + | hypothetical protein NEQ502 444866 - 445384 + | hypothetical protein NEQ501 445850 - 445365 - | hypothetical protein TERM 285 445855 - 445870 + H 72 -2.6 -5.31275 | TTTCCAACCATTCTT TTAGAG CTTT TTCTAA TTTTTTGTCCTCCAA TERM 286 445917 - 445906 - H 76 -4.4 -5.05113 | CCCATATAAATAAAA TACC TAAA GGTA AAACTGTTAAAAAGA TERM 287 446643 - 446627 - g 74 -6.7 -4.22858 | overlap 446624 ACAATAGAGAAAGAA TTAACAT ACT ATGTTAA ACCCATATTCTTTTA TERM 288 446739 - 446721 - g 76 -5.2 -4.94672 | AAATAATACTAAAAA CCTATGGC AAT ACCAAAGG GAAAGTTGAATTTTG NEQ504 446123 - 447190 + | hypothetical protein NEQ503 449789 - 447177 - | DNA-directed RNA polymerase subunit alpha NEQ506 449825 - 450592 + | hypothetical protein pheS 452030 - 450579 - | phenylalanyl-tRNA synthetase subunit alpha TERM 289 452093 - 452081 - R 89 -9.1 -4.12475 | opp_overlap 452079 TATAGATTATACAAA TGGCC AAA GGCCA AATATGTGAAGTAGC rpoH 452545 - 452270 - | DNA-directed RNA polymerase subunit H rps2P 453147 - 452542 - | 30S ribosomal protein S2 TERM 290 453378 - 453362 - g 74 -2.2 -5.52986 | overlap 453363 453364 ATGGGAGCAAAAAAA CCTCGG TATTG CCGAAA AGGGTGTAATAAGGG TERM 291 453620 - 453598 - g 83 -4.3 -5.69473 | opp_overlap 453610 CACAGGACAAAAAAA TAATAACTT TTGCT AAGCTATTA GTTAATGCCAAACCT TERM 292 454759 - 454775 + G 86 -9.4 -4.08317 | opp_overlap 454758 454757 AAATACAAGAAAGCC CCCGCT ATAAA AGCGGG TTTGCTTTAAGGTTC NEQ509 453195 - 454898 + | hypothetical protein NEQ510 455634 - 455194 - | hypothetical protein NEQ511 456742 - 455624 - | succinyl-diaminopimelate desuccinylase TERM 293 455786 - 455799 + g 80 -5.3 -5.20781 | GTATCCATCTGTTCC TCCTA ATTC TAGGA TTTTCTTTTCTCCTA TERM 294 455812 - 455830 + g 80 -9 -3.58869 | GGATTTTCTTTTCTC CTAACAAA TCT TTTGTTAG TTGTATGAATTTGTC TERM 295 456633 - 456647 + g 71 -2.2 -5.33866 | overlap 456634 TCAACATCAAATCCT TTATTT TCT AAATAG TTTTTTATAAATTTC NEQ512 457806 - 456757 - | hypothetical protein TERM 296 457400 - 457418 + g 71 -7.6 -3.5518 | GGGGGCTCTTTATTA TTTATGAA ATG TTCATAAA TTATATCGCTCTTGG NEQ513 458057 - 457803 - | hypothetical protein TERM 297 457955 - 457972 + g 72 -5.7 -4.45484 | opp_overlap 457955 CAAGGTTTTCAACAA TACTAAA AGCT TTTAGTA TTTCTTCTATATCTT NEQ514 458731 - 458069 - | hypothetical protein NEQ515 458738 - 459388 + | N-glycosylase/DNA lyase NEQ516 459410 - 459661 + | hypothetical protein TERM 298 459956 - 459945 - g 81 -4.4 -5.46706 | ATTTGAAAAGAAAAA CCTT CTGC AAGG ATATAAAAAAATAGT TERM 299 460153 - 460132 - g 74 -6.7 -4.25104 | gap 1 GTTTTGGGAGGAAAA CCCAA-AAAC GAA GTTTATTGGG GGGTTATTATACCAC NEQ518 459721 - 460506 + | hypothetical protein NEQ517 461129 - 460503 - | translation initiation factor IF-6 TERM 300 460735 - 460758 + g 83 -8.2 -4.29369 | opp_overlap 460722 460734 ATTAAATACAAATCC GCATTTAGCT TTTT AGCTAAAAGC TTTGCTTCTTTTTTA TERM 301 461403 - 461389 - g 72 -2.8 -5.38951 | overlap 461391 AAGTTATAGAAAAAA TAGAGA AAA TCTCTC CTGATTATAATATAA NEQ519 461181 - 461570 + | hypothetical protein NEQ520 461563 - 461751 + | hypothetical protein NEQ521 462597 - 461845 - | proteasome subunit alpha TERM 302 463334 - 463354 + G 80 -7.5 -4.26792 | opp_overlap 463335 463336, overlap 463335 TGTACCTTATATAGA ATGCCCCTA TGC TAGGGGCGC TTTTAGAATTTATGT TERM 303 463353 - 463335 - g 77 -8.8 -3.59698 | opp_overlap 463334 463335, overlap 463336 GTACCTTATATAGAA TGCCCCTA TGC TAGGGGCG CTTTTAGAATTTATG TERM 304 463335 - 463353 + G 84 -11 -3.14991 | opp_overlap 463335 463336, overlap 463334 GTACCTTATATAGAA TGCCCCTA TGC TAGGGGCG CTTTTAGAATTTATG TERM 305 463352 - 463336 - g 89 -12.3 -2.75498 | opp_overlap 463335 463334, overlap 463335 TACCTTATATAGAAT GCCCCTA TGC TAGGGGC GCTTTTAGAATTTAT NEQ523 462603 - 463577 + | hypothetical protein NEQ522 464642 - 463542 - | hypothetical protein NEQ525 464677 - 465735 + | hypothetical protein NEQ524 466401 - 465721 - | putative RNA-associated protein TERM 306 466096 - 466106 + g 75 -2.6 -5.63236 | ATAGTTTTTCCTAAT TAAT TCT ATTA TTTTTCTTTTTAACT NEQ526 467119 - 466382 - | hypothetical protein NEQ527 468585 - 467116 - | hypothetical protein TERM 307 468174 - 468162 - G 76 -6.2 -4.72272 | CGGTTTGACCAAAAA CCCC GATGT GGGG CGAGAATATAACATT NEQ528 468614 - 469375 + | hypothetical protein TERM 308 469547 - 469560 + G 75 -2.5 -5.62045 | TAACCCATTCCTTGT TAATA GTGT TATTA TTTTTTATTCTATAT NEQ529 469372 - 469773 + | hypothetical protein NEQ531 469788 - 470759 + | hypothetical protein rpl32e 471144 - 470737 - | 50S ribosomal protein L32e TERM 309 471450 - 471415 - H 73 -3.6 -5.05228 | gap 1, opp_overlap 471419 ACTAAACCAGAAAAA CATT-CCATTTAAAATA ACT TATTTTAAAGAGTAATG TGGATATAAGGAATT NEQ532 471450 - 471731 + | hypothetical protein NEQ533 471728 - 472072 + | hypothetical protein NEQ534 472505 - 472948 + | hypothetical protein TERM 310 474089 - 474102 + G 75 -9.5 -2.85621 | overlap 474088 TTCAAATATGGTATG CCCCC TCAT GGGGG ATTTGGATTGGGATT NEQ535 472991 - 474205 + | hypothetical protein TERM 311 474735 - 474723 - g 74 -6.3 -4.36914 | TGCTTTGGCAGAAAA TGTTC AAA GAACA GGCTCTTTAGTTACT NEQ536 474202 - 475200 + | hypothetical protein TERM 312 475577 - 475563 - g 70 -7.2 -3.695 | GGTAAATATGGTAAA GCTAAT GCA ATTAGC CAAGGTTTTTGCATT NEQ538 475197 - 476060 + | hypothetical protein NEQ537 476811 - 476047 - | hypothetical protein NEQ539 477558 - 476929 - | hypothetical protein nusG 477562 - 478089 + | transcription antitermination protein NusG NEQ541 478090 - 478401 + | hypothetical protein TERM 313 480202 - 480229 + G 85 -10.8 -3.21416 | gap 1, opp_overlap 480192 480209, overlap 480199 480207 AGTTATGGACCATGG TCCAATAGCATGG GAA CCATG-TATTGGA TTAATAGTAAAGCTA NEQ543 478433 - 480664 + | elongation factor EF-2 NEQ542 481740 - 480661 - | DNA topoisomerase VI subunit A NEQ545 481777 - 482430 + | hypothetical protein NEQ544 483379 - 482420 - | hypothetical protein TERM 314 483031 - 483007 - G 74 -7.1 -4.10453 | overlap 483009 CAAATGCTGCTAAAA TAGGGCCCAGC AAA GCTAAACCCCA ACTTTTTATTTTTCT TERM 315 483029 - 483009 - G 73 -7.5 -3.64488 | overlap 483007 AATGCTGCTAAAATA GGGCCCAGC AAA GCTAAACCC CAACTTTTTATTTTT TERM 316 483225 - 483205 - G 79 -7 -4.57073 | opp_overlap 483210 TATTGGGTCTAAAAA TAAAATCG TATAG CGATTTTA ATAAAAAAGCAATTG TERM 317 483483 - 483464 - g 76 -3.6 -5.45726 | GAGAGGGCAAAAAAA GAAGGTTT ACCC AAACATTC GAACTAATATTCAAC rpl1P 483418 - 484059 + | 50S ribosomal protein L1P TERM 318 484136 - 484121 - g 74 -4 -5.18409 | GAAAAGAAAAACAAA CTATTC GATA GAACAG AATATATTATACAAG TERM 319 484184 - 484173 - g 76 -3.6 -5.38497 | ATCCAAAGGAAAAAA CCCC AACT AGGG AGGAGGCAAAAGAAA NEQ548 484082 - 484366 + | hypothetical protein NEQ547 485503 - 484358 - | hypothetical protein TERM 320 484476 - 484492 + g 79 -7.3 -4.431 | opp_overlap 484462 CCTCCCCCCGTATTA GATGGGA GCA TTCCATC TTTTATCGCTAAATA NEQ549 486299 - 485496 - | hypothetical protein TERM 321 485581 - 485591 + g 72 -2.6 -5.45652 | TATTTATAATCGCAG TATT GGC AATA TTTTTTATTAGCGAT TERM 322 485977 - 485959 - G 72 -6 -4.3739 | opp_overlap 485959, overlap 485962 TATTTTTCTATAAAA GACCAAAC ATA GTTTGCTC TAAATTTGGCTTCTC NEQ550 486962 - 486423 - | hypothetical protein