TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.508741 %AT, 3937720 nt, 32247 terms. Intergenic: 0.584147 %AT, H2T: 453796 nt, 4456 terms; T2T: 138063 nt, 3437 terms; H2H: 195369 nt, 2989 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|113968346|ref|NC_008321.1| Shewanella sp. MR-4, complete genome (length 4706287) dnaA 79 - 1461 + | chromosomal replication initiation protein Shewmr4_0002 1482 - 2582 + | DNA polymerase III, beta subunit TERM 1 2607 - 2628 + F 100 -14.5 -3.09452 | overlap 2609 GCCTACTTTGTGCCA TACGCCGCT TTTT AGCGGCGTA TATGTCTTCAAGCCT TERM 2 2609 - 2626 + F 93 -12.7 -3.10493 | overlap 2607 CTACTTTGTGCCATA CGCCGCT TTTT AGCGGCG TATATGTCTTCAAGC Shewmr4_0003 2744 - 3826 + | DNA replication and repair protein RecF Shewmr4_0004 3843 - 6260 + | DNA gyrase subunit B TERM 3 6322 - 6304 - T 100 -13.2 -4.88067 | opp_overlap 6304 AGTGATTGATAAAAA GGGAAAGC TTA GCTTTCCC TTTTTGTTTTATTGC TERM 4 6304 - 6322 + T 100 -13.2 -5.62288 | opp_overlap 6304 AGTGATTGATAAAAA GGGAAAGC TTA GCTTTCCC TTTTTGTTTTATTGC Shewmr4_0005 6997 - 6341 - | glutathione S-transferase domain-containing protein TERM 5 6708 - 6727 + g 100 -9.3 -5.28942 | opp_overlap 6716 GAATGCATTTCACAG GCGAAGG AGCGAG CCTTCGC TTTTTGTTTCGGGTC TERM 6 7278 - 7260 - g 76 -6 -4.59511 | overlap 7262 AAGAGCTGGGAAAAA CGCTCTTT GTA AAAGAGGG GCGAAACTTAGTCTT Shewmr4_0006 7124 - 7972 + | LysR family transcriptional regulator Shewmr4_0007 8128 - 9171 + | putative signal transduction protein TERM 7 9182 - 9218 + T 100 -24.1 -2.63596 | opp_overlap 9186 9193, overlap 9186 9193 TTTAATATATTGCAA CCAATAAAAAACGCGCT AAA AGCGCGTTTTTTATTGG TACTCTAACGTGCGA TERM 8 9214 - 9186 - T 100 -17.7 -3.37053 | opp_overlap 9182 9186 9193, overlap 9193 ATATATTGCAACCAA TAAAAAACGCGCT AAA AGCGCGTTTTTTA TTGGTACTCTAACGT TERM 9 9186 - 9214 + T 100 -17.7 -3.24925 | opp_overlap 9186 9193, overlap 9182 9193 ATATATTGCAACCAA TAAAAAACGCGCT AAA AGCGCGTTTTTTA TTGGTACTCTAACGT TERM 10 9193 - 9207 + T 100 -11.4 -5.52023 | opp_overlap 9186 9193, overlap 9186 9182 GCAACCAATAAAAAA CGCGCT AAA AGCGCG TTTTTTATTGGTACT TERM 11 9207 - 9193 - T 100 -11.4 -5.5604 | opp_overlap 9193 9186 9182, overlap 9186 GCAACCAATAAAAAA CGCGCT AAA AGCGCG TTTTTTATTGGTACT glyS 11301 - 9235 - | glycyl-tRNA synthetase subunit beta glyQ 12216 - 11311 - | glycyl-tRNA synthetase subunit alpha TERM 12 12807 - 12821 + G 71 -5 -4.4522 | overlap 12809 AACTCGGCTTTAACT TTGTTG GCC CAACGA TTTGTTATGCTTTTA Shewmr4_0010 12335 - 12907 + | DNA-3-methyladenine glycosylase I TERM 13 12943 - 12976 + T 100 -15.5 -3.98291 | opp_overlap 12948, overlap 12948 GCTAACATCCAAAAT AAAAAGGCATGTTCC ACGT GGAACATGCCTTTTG TTATTTCACCTTGTT TERM 14 12971 - 12948 - T 100 -15.4 -5.48213 | opp_overlap 12943 12948 CATCCAAAATAAAAA GGCATGTTCC ACGT GGAACATGCC TTTTGTTATTTCACC TERM 15 12948 - 12971 + T 100 -15.4 -5.00196 | opp_overlap 12948, overlap 12943 CATCCAAAATAAAAA GGCATGTTCC ACGT GGAACATGCC TTTTGTTATTTCACC Shewmr4_0011 16184 - 12996 - | amidohydrolase TERM 16 13529 - 13555 + g 70 -8.8 -3.64822 | CGCCGTAGGCGACGA CTAAGGTTGG AGTGTAA CCGACCTTAG TTTGGCTCCAGAACT TERM 17 14655 - 14642 - G 70 -2.3 -4.99043 | TGTTCATAAAGAAAA TGCGG TCTG CCGAA GCGCCGAATTGTGCT Shewmr4_0012 16818 - 16381 - | hypothetical protein TERM 18 16849 - 16863 + r 71 -4.2 -4.89009 | overlap 16851 CCTAATGTCGATGCA GAGACT TAG AGTCCC TTTTTAATTAGATAT Shewmr4_0013 17099 - 16854 - | SirA family protein TERM 19 17251 - 17236 - R 72 -7.6 -3.74224 | TCGAAACCATCGAAA TGTTCC ACGT GGAACA ACATCATTATTCGGC Shewmr4_0014 18451 - 17258 - | diguanylate cyclase TERM 20 17410 - 17421 + g 76 -3 -5.16237 | CTGCTCGTGCGCGTT TGTA GCTA TACA TTTTTTGATCGGCTT TERM 21 18005 - 17980 - G 73 -10.5 -3.2505 | opp_overlap 17977 CAAACACTAAGGTAA CATCGAAAAGC ACTA GCTTGTCGATG GCGATTCTAATGCGT TERM 22 18664 - 18684 + r 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCAC Shewmr4_0015 19464 - 18661 - | integrase catalytic subunit TERM 23 18875 - 18895 + g 71 -11.1 -2.79327 | opp_overlap 18875, overlap 18874 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 24 18895 - 18875 - G 79 -11.1 -3.54029 | opp_overlap 18875 18874 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 25 19170 - 19220 + g 76 -4.8 -5.01546 | gap 1, opp_overlap 19187 CATCATGCAGTCCTT CCTCTTTCAGCAAAT-TAGGATG CTTCTT CATCCAGTGTTTGCTGAACGTGG TTTTTGTGTAGCTTT TERM 26 19481 - 19508 + r 71 -4 -4.8622 | opp_overlap 19466, overlap 19466 19466 CCCGCAGCACGACAT GCGGCAGCGAGG TTTA TTTCGCCGTTGC TTTTTGCTTGCCAGA Shewmr4_0016 19889 - 19494 - | transposase TERM 27 19963 - 19946 - R 100 -8.4 -5.5353 | opp_overlap 19946 GAGAGCAATAAAAAA GCCGGA GCTGAA TCCGGC TTTTAAAGAATGGGG TERM 28 19946 - 19963 + r 79 -8.4 -4.09685 | opp_overlap 19946 GAGAGCAATAAAAAA GCCGGA GCTGAA TCCGGC TTTTAAAGAATGGGG fadA 21150 - 19987 - | 3-ketoacyl-CoA thiolase fadB 23323 - 21173 - | multifunctional fatty acid oxidation complex subunit alpha TERM 29 21453 - 21463 + g 73 -5.4 -4.72272 | overlap 21448 GCGATGATCTCATCC GCAT CGA ATGC TTTTTGCTCACCAAA TERM 30 22395 - 22408 + g 82 -3.7 -5.22039 | CTTTTCACATCTTTA GCGAG TTTG CCCGC TTTTTTAGCTTTGCC TERM 31 22523 - 22543 + g 77 -10.3 -3.61517 | overlap 22520 AATTTGCAGTGCGTC GCTGCGGCC TTT GGTCGCCGC TTGTTCAACAACGCT TERM 32 22686 - 22700 + g 71 -5.7 -4.38712 | TTACGTTGGCGACGG GCTTG CCAAT CAAGC TTTTCTGCAACTGCA Shewmr4_0019 23767 - 25086 + | proline dipeptidase TERM 33 25142 - 25182 + G 86 -12.3 -3.90112 | gap 1, opp_overlap 25150, overlap 25150 GTGAAAGTGTGCAGA TAGAAGAAGAGATAAAGC ATAGCC GCTTTATCTCTT-TTCTA TTTCATTGCACGAGC TERM 34 25175 - 25150 - g 84 -11.3 -3.92996 | opp_overlap 25142 25150 GTGCAGATAGAAGAA GAGATAAAGCA TAGC CGCTTTATCTC TTTTCTATTTCATTG TERM 35 25150 - 25175 + G 100 -10.6 -4.84539 | opp_overlap 25150, overlap 25142 GTGCAGATAGAAGAA GAGATAAAGC ATAGCC GCTTTATCTC TTTTCTATTTCATTG Shewmr4_0020 25102 - 25716 + | hypothetical protein Shewmr4_0021 25794 - 27251 + | TrkH family potassium uptake protein TERM 36 27336 - 27320 - g 90 -8.7 -4.67038 | GCCGCAAAATCAAAA CGCTTGC CGA ACAAGCG GGTGAGCAGGTGTCG Shewmr4_0022 27253 - 27777 + | protoporphyrinogen oxidase TERM 37 27814 - 27781 - T 79 -6.8 -4.62872 | opp_overlap 27784 27788, overlap 27782 27784 27788 AGCAAGCTGTAAAAA TGATAAAGCCCTAG TCTCAG CTAGGGCTTTATTG TTACTGCATGGCATG TERM 38 27813 - 27782 - T 78 -10.3 -3.37 | opp_overlap 27784 27788, overlap 27781 27784 27788 GCAAGCTGTAAAAAT GATAAAGCCCTAG TCTCAG CTAGGGCTTTATT GTTACTGCATGGCAT TERM 39 27784 - 27811 + T 100 -13.6 -3.73647 | opp_overlap 27784 27782 27781 27788, overlap 27788 AAGCTGTAAAAATGA TAAAGCCCTAGT CTCA GCTAGGGCTTTA TTGTTACTGCATGGC TERM 40 27811 - 27784 - T 100 -12.9 -3.24823 | opp_overlap 27784 27788, overlap 27782 27781 27788 AAGCTGTAAAAATGA TAAAGCCCTAG TCTCAG CTAGGGCTTTA TTGTTACTGCATGGC TERM 41 27788 - 27807 + T 100 -10 -4.48713 | opp_overlap 27784 27782 27781 27788, overlap 27784 TGTAAAAATGATAAA GCCCTAGT CTCA GCTAGGGC TTTATTGTTACTGCA TERM 42 27807 - 27788 - T 88 -9.3 -4.2687 | opp_overlap 27788 27784, overlap 27784 27782 27781 TGTAAAAATGATAAA GCCCTAG TCTCAG CTAGGGC TTTATTGTTACTGCA Shewmr4_0023 28148 - 27840 - | ArsR family transcriptional regulator Shewmr4_0024 28348 - 28902 + | protoporphyrinogen oxidase TERM 43 28902 - 28932 + T 100 -14.2 -4.68593 | opp_overlap 28909, overlap 28903 28909 TACTGAACCCGCCTA ATAAAAATGCGCTC TGT GAGCGCATTTTTAG TTTTTGACTGATACG TERM 44 28903 - 28931 + T 100 -17.7 -3.40674 | opp_overlap 28909, overlap 28902 28909 ACTGAACCCGCCTAA TAAAAATGCGCTC TGT GAGCGCATTTTTA GTTTTTGACTGATAC TERM 45 28925 - 28909 - T 100 -12.3 -5.06414 | opp_overlap 28909 28903 28902 CCCGCCTAATAAAAA TGCGCTC TGT GAGCGCA TTTTTAGTTTTTGAC TERM 46 28909 - 28925 + T 100 -12.3 -5.18355 | opp_overlap 28909, overlap 28903 28902 CCCGCCTAATAAAAA TGCGCTC TGT GAGCGCA TTTTTAGTTTTTGAC Shewmr4_0025 30391 - 28949 - | TrkH family potassium uptake protein TERM 47 29414 - 29402 - G 86 -5.5 -5.31855 | overlap 29403 CATTAAGAATAAAAA CGCGA TAT TCGCA AATGCGCCCCAAGCG TERM 48 30322 - 30276 - G 72 -8 -3.81951 | gap 2, opp_overlap 30283 GCCGACAGCATGAAA GCGCCCACGGTTTCCTCACCGT TGAAT ACGGCAAGG-AGCAG-GGGCGC TAACATAAAGGCTGT trkA 31812 - 30403 - | potassium transporter peripheral membrane component TERM 49 30432 - 30454 + g 80 -4.8 -5.06414 | opp_overlap 30432 CGCTAGGTTGGAACA GTTTCTCGAC TTC GCCGACAAAC TTTTTGTTCACGAGG TERM 50 31438 - 31454 + g 71 -7.9 -4.11472 | opp_overlap 31433 31437 31436 31434 GATCACAAAACCACC GCGAGGG CGC CCCTCAC TATTTTTGGTTTCAC Shewmr4_0027 33117 - 31828 - | sun protein TERM 51 32985 - 33000 + g 74 -6.8 -4.33258 | opp_overlap 32985 TCACGCCGTAGCAGA GCTCTG CGAG CAGGGC TTTATCTTTACCACT Shewmr4_0028 34073 - 33117 - | methionyl-tRNA formyltransferase TERM 52 33185 - 33197 + g 76 -4.8 -5.02074 | overlap 33181 CGTTGAGTATGTCGG CCAC GCTGA GTGG TTTTTTACCGGGTAA TERM 53 34096 - 34112 + r 71 -5 -4.72486 | CCTAATGCTTATTTG GCGTCC TGTCT GGCCGC TTTTTCAAGTTTCTG Shewmr4_0029 34595 - 34089 - | peptide deformylase Shewmr4_0030 34721 - 35845 + | peptidoglycan-binding LysM Shewmr4_0031 35929 - 36945 + | DNA protecting protein DprA Shewmr4_0032 36948 - 37424 + | hypothetical protein TERM 54 37467 - 37453 - f 73 -7.1 -4.14859 | opp_overlap 37453 ATGAATAATGAGAAA GGAGG CTAGC CCTCC TTTTTTGATGCCATA TERM 55 37453 - 37467 + F 90 -7.1 -5.15634 | opp_overlap 37453 ATGAATAATGAGAAA GGAGG CTAGC CCTCC TTTTTTGATGCCATA Shewmr4_0033 37547 - 38110 + | DNA topoisomerase type IA Zn finger domain-containing protein Shewmr4_0034 38249 - 38815 + | translation factor SUA5 Shewmr4_0035 38845 - 39753 + | coproporphyrinogen III oxidase TERM 56 39800 - 39768 - T 77 -10.7 -2.75252 | opp_overlap 39770 39772, overlap 39757 39765 AGCACGCTAACACGA GTTGCGTAATCAGTA CGT TACTGATTACGCATA TGATCTGCCAGAGTT TERM 57 39770 - 39798 + T 100 -17.7 -2.85351 | opp_overlap 39757 39768 39765, overlap 39772 CACGCTAACACGAGT TGCGTAATCAGTA CGT TACTGATTACGCA TATGATCTGCCAGAG Shewmr4_0036 40222 - 39785 - | globin Shewmr4_0037 40394 - 41272 + | shikimate 5-dehydrogenase Shewmr4_0038 41293 - 41568 + | hypothetical protein TERM 58 41607 - 41584 - T 73 -8.9 -3.41978 | opp_overlap 41581 41580 41584, overlap 41575 GCACAACTCAAGCAA GATGGCAGC TTAAAT ACTGCCATC TCGATTTGATAGAAA TERM 59 41626 - 41651 + T 84 -9.9 -3.80855 | gap 1, opp_overlap 41623, overlap 41623 ATTTGATAGAAACGC TACTCTGGCTGA GGT TCAGCCA-AGTA TTCGTTTTTCAGGCG Shewmr4_0039 42173 - 41625 - | carbonic anhydrase TERM 60 42452 - 42438 - H 75 -8.6 -3.80893 | ACGCGACAAGGGAAA TGCGTA GAA TACGCA GCCCTGACCCGCTGA TERM 61 42579 - 42557 - H 70 -7.1 -3.76952 | gap 1 TTGAGTTAATCGAAA TTACTCTGCC GTTT GGC-GAGTAA TCAAAATTTAAATCA TERM 62 44446 - 44406 - H 84 -2.7 -5.63374 | opp_overlap 44413 44418 44420 44425, overlap 44420 TTAATACGAAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 63 45026 - 45014 - H 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 64 45824 - 45808 - H 85 -9.4 -4.08546 | overlap 45821 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 65 46278 - 46306 + H 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 66 47492 - 47480 - H 72 -6.3 -4.2586 | TTAGACGAATAGAAA CACTT AAG AAGTG GCACTCAATACAGCT TERM 67 47892 - 47927 + H 100 -15.6 -2.65339 | opp_overlap 47899, overlap 47899 CTCCGCCAACATTAA GAGATAAGCCTCTGCA GCAA TGCAGAGGCTTTTTTC GTTATGCAGTTTTGT TERM 68 47920 - 47899 - H 100 -14.5 -3.72396 | opp_overlap 47899 47892 AACATTAAGAGATAA GCCTCTGCA GCAA TGCAGAGGC TTTTTTCGTTATGCA TERM 69 47899 - 47920 + H 100 -14.5 -5.32944 | opp_overlap 47899, overlap 47892 AACATTAAGAGATAA GCCTCTGCA GCAA TGCAGAGGC TTTTTTCGTTATGCA Shewmr4_0040 48200 - 48454 + | hypothetical protein Shewmr4_0041 48476 - 48931 + | BadM/Rrf2 family transcriptional regulator Shewmr4_0042 49661 - 48906 - | protein of unknown function DUF610, YibQ Shewmr4_0043 50879 - 49674 - | C-terminal processing peptidase-3 TERM 70 49952 - 49962 + g 71 -6.8 -4.25104 | TTTCACCGAGCAGTT TGGC GCG GCCA TTTTCCTGCAGGGCG TERM 71 50881 - 50907 + r 86 -12.3 -2.52543 | ATTAGTTGTTTCATA GCCGTCCCC TGTGATGAT GGGGACGGC TACCTTAGCGAGAGT TERM 72 52040 - 52015 - R 100 -14.9 -2.88737 | opp_overlap 52019, overlap 52019 AGAAAGATAACATCA TAAAGCCAGCA ATAA TGCTGGCTTTA ACGGGGAGTCGAGTG TERM 73 52036 - 52019 - R 100 -11.3 -4.09173 | opp_overlap 52019, overlap 52015 AGATAACATCATAAA GCCAGCA ATAA TGCTGGC TTTAACGGGGAGTCG TERM 74 52019 - 52036 + r 89 -11.3 -3.53444 | opp_overlap 52019 52015 AGATAACATCATAAA GCCAGCA ATAA TGCTGGC TTTAACGGGGAGTCG Shewmr4_0045 53615 - 52071 - | phosphoglyceromutase TERM 75 52596 - 52607 + g 74 -4.4 -4.81249 | GTTGAAGAAGAAGGT TACG TGGG CGTA TTTTTCAGTTTCGGA Shewmr4_0046 53881 - 54315 + | rhodanese domain-containing protein TERM 76 54547 - 54527 - f 85 -4 -5.51046 | opp_overlap 54541 TAAATAGACAAAAAA GCCAAC CAGATAAGT GTTGGC ATAACATTGATAGGA TERM 77 54850 - 54875 + G 71 -10.5 -3.08464 | TCTCAATCGCAGGTC TGACTGAGCCA CAAC TGGCTCACTCA TTAGGTGCATACTGC Shewmr4_0047 54576 - 55061 + | preprotein translocase subunit SecB gpsA 55066 - 56082 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 78 56134 - 56116 - f 100 -8.8 -4.87892 | opp_overlap 56116 GCTGAATAAAATAAA GGGTGCTA AAA TAGCGCCC TTTTTTATGTCCGAT TERM 79 56116 - 56134 + F 100 -11 -5.37043 | opp_overlap 56116 GCTGAATAAAATAAA GGGTGCTA AAA TAGCGCCC TTTTTTATGTCCGAT TERM 80 56938 - 56928 - g 73 -5.4 -4.69326 | ACAGCGAAGATAAAA TTCG CTT CGAA CCGCTGTCGGGCATT Shewmr4_0049 56321 - 57505 + | hypothetical protein TERM 81 57989 - 58015 + F 82 -5 -5.38054 | AATAAGACATTTTAA CCGCCCGATAGT AAA ACTAGGAGGCGG TTTTTGTTTATCCAA Shewmr4_0050 58053 - 59630 + | hypothetical protein Shewmr4_0051 61199 - 59838 - | TrkH family potassium uptake protein Shewmr4_0052 61899 - 61201 - | TrkA domain-containing protein Shewmr4_0053 62633 - 61944 - | two component transcriptional regulator Shewmr4_0054 63680 - 62634 - | periplasmic sensor signal transduction histidine kinase Shewmr4_0055 64831 - 63908 - | pirin domain-containing protein TERM 82 66929 - 66953 + G 82 -7.1 -4.86731 | opp_overlap 66928 66935 GCTACAGCTTAAACG GCTAAATCCGG GGA CCGAAGTTAGC TTTTATTTACCAGAA Shewmr4_0056 65316 - 66989 + | signal transduction histidine kinase, LytS TERM 83 67540 - 67552 + G 76 -6.2 -4.74103 | GTTTGTCAGCCGCTT GCCC GCCGA GGGC TTTTTCCGTTGCCAC Shewmr4_0057 66983 - 67714 + | response regulator receiver protein Shewmr4_0058 67822 - 69066 + | major facilitator transporter TERM 84 69136 - 69103 - T 100 -13.3 -3.6707 | opp_overlap 69108 69109, overlap 69109 AGCCAAGAGCTCAAA CAAAAATCCGCAGCC AAAT AGCTGCGGACTTTTA ATGTCAATTGAAGTG TERM 85 69108 - 69131 + T 79 -8.1 -4.36931 | opp_overlap 69103 69109, overlap 69109 AGAGCTCAAACAAAA ATCCGCAGC CAAATA GCTGCGGAC TTTTAATGTCAATTG TERM 86 69109 - 69130 + T 84 -11.6 -3.21436 | opp_overlap 69109 69103, overlap 69108 GAGCTCAAACAAAAA TCCGCAGC CAAATA GCTGCGGA CTTTTAATGTCAATT TERM 87 69130 - 69109 - T 100 -12.3 -5.28942 | opp_overlap 69108 69109, overlap 69103 GAGCTCAAACAAAAA TCCGCAGCC AAAT AGCTGCGGA CTTTTAATGTCAATT Shewmr4_0059 69776 - 69156 - | hypothetical protein TERM 88 70108 - 70128 + H 84 -9.9 -3.8709 | GTTTTTGAGCTCTGA GATTTTTAG TAG CTAAAAATC TTTGTAGAAGCATTT TERM 89 70190 - 70217 + H 75 -3.4 -5.1101 | CCATAAAGCGTTATT CAGGATGTGTTG ATGT TAACAGACCCTG TTTTTTGGCTGGTGG Shewmr4_0060 70202 - 70939 + | hypothetical protein TERM 90 71082 - 71125 + G 71 -11.1 -2.78463 | gap 1 CTGATAGTTATCTTA GCCTTAGGTCTTGGCGC-CT GTGCG AGCGCGCCAGAACCTAAGCC TGTGGTGAAGCAAGT Shewmr4_0061 71040 - 71519 + | NLP/P60 protein Shewmr4_0062 71544 - 72992 + | major facilitator transporter Shewmr4_0063 73081 - 74109 + | LacI family transcription regulator TERM 91 74128 - 74154 + T 100 -15.3 -5.21236 | opp_overlap 74133, overlap 74133 AATCAGTTTTATATG CAAAAGGCGCT AATTA AGCGCCTTTTG TTTTTGTTCTGCATT TERM 92 74133 - 74149 + T 100 -9.4 -5.44638 | opp_overlap 74133, overlap 74128 GTTTTATATGCAAAA GGCGCT AATTA AGCGCC TTTTGTTTTTGTTCT TERM 93 74149 - 74133 - T 85 -9.4 -4.2349 | opp_overlap 74133 74128 GTTTTATATGCAAAA GGCGCT AATTA AGCGCC TTTTGTTTTTGTTCT Shewmr4_0064 75652 - 74168 - | sucrose phosphorylase TERM 94 76933 - 76946 + G 70 -2.3 -5.01732 | AGCACGGCTCTGTGG CTGGA GTTA TCCTG TTTTTTACCGCGGTT Shewmr4_0065 75909 - 77129 + | major facilitator transporter TERM 95 77163 - 77137 - f 100 -15.4 -3.75153 | opp_overlap 77137 CCGCTTGAATTGAAA TGTGACAGAAAA ATT TTTTCTGTCACA TTTTTTCGATTAATC TERM 96 77137 - 77163 + F 100 -15.4 -5.17576 | opp_overlap 77137 CCGCTTGAATTGAAA TGTGACAGAAAA ATT TTTTCTGTCACA TTTTTTCGATTAATC Shewmr4_0066 77389 - 79785 + | TonB-dependent receptor TERM 97 79825 - 79841 + F 91 -8 -4.86621 | opp_overlap 79824 79825 CCAACAATTTAAAAG GCCCAT CAAGC ATGGGC TTTTTGCTTAACCAT TERM 98 79977 - 79957 - g 70 -11.1 -2.56715 | opp_overlap 79945 AGTCCCATCAAGCCA TTGCGGGCG GCG CGCCTGCAA ACGTGGCTGTGGGTT TERM 99 80632 - 80616 - g 74 -7.9 -4.13995 | GTCCCACAAATTAAA GCCGTTG ATA CCACGGC GGCGGGCGACAGCTT Shewmr4_0067 79878 - 80837 + | ribokinase-like domain-containing protein TERM 100 80858 - 80885 + F 89 -7 -5.41143 | CCTGCAAACCATCAA GCTGAGGTGAGT GATT GCTTGCCTTAGC TTTTTTTCGAGCCTA mogA 81043 - 81576 + | molybdenum cofactor biosynthesis protein TERM 101 81603 - 81619 + T 100 -12.3 -5.5074 | opp_overlap 81603 GCAAGATGACATAAA CCCAAGC CTA GCTTGGG TTTTTTATTGGCTTG TERM 102 81619 - 81603 - T 100 -12.3 -4.13591 | opp_overlap 81603 GCAAGATGACATAAA CCCAAGC CTA GCTTGGG TTTTTTATTGGCTTG Shewmr4_0069 81828 - 81610 - | hypothetical protein Shewmr4_0070 81980 - 83023 + | transcriptional regulator Shewmr4_0071 83287 - 83027 - | hypothetical protein TERM 103 83183 - 83199 + g 73 -5 -4.68994 | overlap 83184 CTGTCGCTCGTTGCC GCCGCC CAGTT GGCGGA TTTTTAGATAATGCT TERM 104 83299 - 83331 + r 81 -11.3 -2.80074 | opp_overlap 83308, overlap 83297 83295 CCATAACTGACCTCT TTAACCCAAGGGCGT ACA GTGCCCTTGGGTCGA TAGTGTTATAAGCCG Shewmr4_0072 84476 - 83337 - | transport protein, putative Shewmr4_0073 85299 - 84565 - | ABC transporter related Shewmr4_0074 86909 - 85302 - | TAP domain-containing protein Shewmr4_0075 87002 - 87367 + | GntR family transcriptional regulator TERM 105 87492 - 87462 - g 79 -7.7 -4.50159 | gap 1 TCTAACGTAAACAAA GTGTTTCG-TGGCA AAGG TGCCAGCGAAAAAC GTGCGCTCAAGGATC TERM 106 87738 - 87748 + G 70 -3.2 -4.83615 | GAGCGCGCCCTCGAT TTGC ACC GCAG TTTTTATCCCCACTG TERM 107 87980 - 87990 + G 70 -8.2 -3.72481 | overlap 87979 CTTAGCCCTCGAATC CGGC TCG GCCG TGTTGTTTTCATCCC TERM 108 88042 - 88063 + G 70 -11.6 -2.5789 | overlap 88041 GGGTCGCGAGCCATG TCGCCCTG ATTAAA CAGGGCGA GTTAGTGCTGTTTAA Shewmr4_0076 87414 - 88277 + | ABC transporter related TERM 109 88674 - 88693 + G 71 -5.7 -4.37544 | overlap 88681 CGTTACTGGTCTTTG CCCAAGG GATAAG TCTTGGG TTTATCTTGTTGTGC Shewmr4_0077 88274 - 89584 + | hypothetical protein Shewmr4_0078 89713 - 91506 + | AMP-dependent synthetase and ligase TERM 110 91530 - 91544 + F 100 -12.8 -5.36441 | opp_overlap 91530 TCTTTGATCTTAAAA GGCCGC TTA GCGGCC TTTTTTGTGTCAGCC TERM 111 91544 - 91530 - f 100 -12.8 -4.13767 | opp_overlap 91530 TCTTTGATCTTAAAA GGCCGC TTA GCGGCC TTTTTTGTGTCAGCC Shewmr4_0079 91647 - 94136 + | MORN repeat-containing protein Shewmr4_0080 94244 - 94654 + | thioesterase superfamily protein TERM 112 94664 - 94703 + F 80 -11.6 -2.59431 | overlap 94659 GCTTAAGTTTGATAT TTGCTTTCACCACGTAAT TGCA ATTACGTGGTGAAAACGC TACCTTGTCGGCCGC TERM 113 94726 - 94746 + F 71 -6.8 -4.12532 | opp_overlap 94723, overlap 94723 94727 TCGGCCGCAAATGTG ACGCGGAT CACTT ATCCGCGC TTTCTCTCTACCGGC TERM 114 94727 - 94745 + F 77 -10.3 -3.07198 | opp_overlap 94723, overlap 94723 94726 CGGCCGCAAATGTGA CGCGGAT CACTT ATCCGCG CTTTCTCTCTACCGG Shewmr4_0081 94772 - 95320 + | HPP family protein TERM 115 95377 - 95343 - T 79 -8.1 -4.33151 | gap 1, opp_overlap 95347, overlap 95347 95374 CAGTACAAGTCAAAA TAAATCCTTAAACTCG GATG CG-GCTTAAGGATCTA CTCTAGATAGATAAG TERM 116 95373 - 95347 - T 79 -6.7 -4.73092 | gap 1, opp_overlap 95347, overlap 95343 ACAAGTCAAAATAAA TCCTTAAACTCG GATG CG-GCTTAAGGA TCTACTCTAGATAGA Shewmr4_0082 95979 - 95572 - | hypothetical protein Shewmr4_0083 96292 - 96029 - | hypothetical protein TERM 117 96100 - 96130 + g 79 -11.1 -3.55761 | CTTTAGCCCACTTTA GGCCATGGCGAAC TAAAC GTTCGGCAAGGCC TTTGCCGCGTAGCTC Shewmr4_0084 96816 - 96352 - | thioesterase superfamily protein TERM 118 97193 - 97203 + G 76 -3.2 -5.12068 | overlap 97177 CGGCGCAGCTTGAGT CTGT GCA GCAG TTTTTATTGAATATC Shewmr4_0085 96964 - 97317 + | MerR family transcriptional regulator TERM 119 97321 - 97358 + F 83 -10.8 -3.52787 | overlap 97324 TCCCGCGCCTAATTG CATGCTTGA-CTCTGCCC CTAG GGGCAGAGCTTAAGC-TG TTGTCATATTGAATA TERM 120 97324 - 97356 + F 100 -13.6 -3.33348 | gap 1, overlap 97321 CGCGCCTAATTGCAT GCTTGA-CTCTGCCC CTAG GGGCAGAGCTTAAGC TGTTGTCATATTGAA TERM 121 97633 - 97658 + G 70 -9 -3.54919 | overlap 97634 TGATTGTGGTGCCCA TTTGGTGGGG CAGCGT CCCCGCCAAG TTTAAAGGACTAATT Shewmr4_0086 97389 - 97967 + | NAD(P)H dehydrogenase (quinone) Shewmr4_0087 97983 - 98378 + | glutathione-dependent formaldehyde-activating, GFA Shewmr4_0088 98382 - 98738 + | MerR family transcriptional regulator Shewmr4_0089 98922 - 99308 + | carboxymuconolactone decarboxylase TERM 122 99344 - 99317 - T 100 -17.2 -4.3255 | opp_overlap 99323, overlap 99323 CGTTTAAGCAATAAA CAAAAAGCGACC CTTG GGTCGCTTTTTG TGTGCAGTGCCGATG TERM 123 99323 - 99338 + T 100 -10.4 -4.9792 | opp_overlap 99317 99323 AGCAATAAACAAAAA GCGACC CTTG GGTCGC TTTTTGTGTGCAGTG TERM 124 99338 - 99323 - T 100 -10.4 -5.48514 | opp_overlap 99323, overlap 99317 AGCAATAAACAAAAA GCGACC CTTG GGTCGC TTTTTGTGTGCAGTG Shewmr4_0090 100040 - 99360 - | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase Shewmr4_0091 100404 - 100838 + | hypothetical protein Shewmr4_0092 100931 - 101944 + | hypothetical protein TERM 125 101962 - 101982 + F 100 -13.3 -3.86194 | opp_overlap 101950 101948 101962, overlap 101980 ATAGTCGCCTCAATA GCAGCCACG TTC TGTGGCTGC TTTATGCGGCAGCTT TERM 126 101982 - 101962 - f 93 -12.6 -3.02263 | opp_overlap 101962 101980, overlap 101950 101948 ATAGTCGCCTCAATA GCAGCCAC GTTCT GTGGCTGC TTTATGCGGCAGCTT Shewmr4_0093 102073 - 102804 + | hypothetical protein TERM 127 102865 - 102838 - T 86 -7.6 -4.60041 | opp_overlap 102842, overlap 102840 102842 AGGGAGCCGTAAAAA GACAGGGGCCGC CTAA GCTGCCCCTATA TTGAGATGATTTGAG TERM 128 102863 - 102840 - T 89 -10.2 -3.91506 | opp_overlap 102842, overlap 102838 102842 GGAGCCGTAAAAAGA CAGGGGCCGC CTAA GCTGCCCCTA TATTGAGATGATTTG TERM 129 102842 - 102861 + T 77 -10.6 -3.09557 | opp_overlap 102840 102838 102842 AGCCGTAAAAAGACA GGGGCCGC CTAA GCTGCCCC TATATTGAGATGATT TERM 130 102861 - 102842 - T 80 -10.6 -3.54256 | opp_overlap 102842, overlap 102840 102838 AGCCGTAAAAAGACA GGGGCCGC CTAA GCTGCCCC TATATTGAGATGATT Shewmr4_0094 104802 - 102895 - | hypothetical protein TERM 131 105012 - 105054 + H 75 -10.2 -2.88544 | gap 1, opp_overlap 105021 105030, overlap 105026 ACCAACTGCTATTTA GTTGACATAGTCAATCAAT CTCGAT ATTG-TTGACAATGTCAAC TATCTCGAGATGCCA TERM 132 105064 - 105030 - H 100 -13 -3.39856 | opp_overlap 105012 105026, overlap 105021 GACATAGTCAATCAA TCTCGATATTGTTGAC AAT GTCAACTATCTCGAGA TGCCATTATGTCTAC Shewmr4_0095 105072 - 105500 + | MarR family transcriptional regulator Shewmr4_0096 105536 - 106282 + | FAD-binding 9, siderophore-interacting domain-containing protein TERM 133 106615 - 106625 + T 75 -2.4 -5.40072 | opp_overlap 106606, overlap 106607 TACAACCCCAGTTCA CTGG TAT CCTG TTTTTTTCCAAAAGC TERM 134 106931 - 106964 + T 88 -9.8 -4.07868 | opp_overlap 106930 106934, overlap 106934 GATGGCTAAGCACAT CAATAGGTTATAAG CTGTCT CTAATAACCTATTG TTTATGTCAGTATAA Shewmr4_0097 108212 - 106986 - | imidazolonepropionase Shewmr4_0098 108410 - 109117 + | histidine utilization repressor TERM 135 110545 - 110530 - g 70 -4.6 -4.61231 | opp_overlap 110542 CGAGATGGTGAAAAA CGGCGA GCTG TCGGCG CCCATCGTCATTGGT TERM 136 110881 - 110866 - g 70 -4.6 -4.61231 | overlap 110876 110878 CGAGATCGCGAAAAA CTGCGC AAAA GAGCAG GGCTTAGATCTGCCC Shewmr4_0099 109241 - 110911 + | urocanate hydratase Shewmr4_0100 110959 - 112500 + | histidine ammonia-lyase TERM 137 112572 - 112592 + F 91 -8.3 -4.63586 | opp_overlap 112567, overlap 112567 ACCAATAAAGTGGAA GGCATAGTG ATT TGCTATGCC TTTTATCTATCCTAT TERM 138 112609 - 112622 + F 75 -5.9 -4.72486 | overlap 112608 TTTATCTATCCTATG CGGCG ATTT CGCTG TTTTTGCACTTTGTA TERM 139 113559 - 113549 - g 90 -8.2 -4.91712 | CCTAATTGAGAAAAA CGCC GAT GGCG TAACGGTTAACCGTT Shewmr4_0101 113109 - 113690 + | twin-arginine translocation pathway signal TERM 140 115874 - 115860 - g 70 -2.8 -4.82901 | overlap 115862 TTGGCGGCAGAAAAA GGCATT AAG AATGGC GATTGGGTGAAAGTG Shewmr4_0102 113739 - 116123 + | formate dehydrogenase alpha subunit TERM 141 116354 - 116326 - g 89 -10.4 -4.28548 | gap 1, overlap 116327 AGGGACTTATCAAAA CCCAGCATCTCTG TCGC CAGAG-TGCTGGA CCCTGATGAAGTACA TERM 142 116353 - 116327 - g 77 -11.7 -3.16647 | gap 1, overlap 116326 GGGACTTATCAAAAC CCAGCATCTCTG TCGC CAGAG-TGCTGG ACCCTGATGAAGTAC Shewmr4_0103 116126 - 117040 + | formate dehydrogenase beta subunit Shewmr4_0104 117037 - 117678 + | formate dehydrogenase gamma subunit TERM 143 117775 - 117763 - g 74 -7.7 -4.13767 | opp_overlap 117773 CGGTGGACCCTAAAA CTGTG TAT CACAG ACGGGCGCAGCGTTT Shewmr4_0105 117678 - 118586 + | formate dehydrogenase accessory protein FdhE TERM 144 118594 - 118620 + F 100 -13 -3.89695 | opp_overlap 118592 118593, overlap 118595 AGCAATAACCAAAGT CGGGAAGGGCTC ACC GAGTCCTTCCCC TTATATTTATCAAGA TERM 145 118595 - 118619 + F 100 -16.5 -2.93335 | opp_overlap 118592 118593, overlap 118594 GCAATAACCAAAGTC GGGAAGGGCTC ACC GAGTCCTTCCC CTTATATTTATCAAG TERM 146 118927 - 118908 - g 79 -9.2 -4.1721 | AGCCATAGTCTAAAA CCCGTGTG GAAC CTCACGGG AACTATCCTGCATAC TERM 147 119561 - 119572 + G 71 -7.2 -3.9941 | TAAACTCCTCGGCGG CCCG CAAT CGGG TTTGATTGTCGGCAA TERM 148 119847 - 119870 + G 76 -6 -4.62783 | gap 1, overlap 119845 TGCCAAACTCAAGTC GGTAGC-GGCT CGC AGCCCGATACC TTTTTGCCCTCAATC Shewmr4_0106 118635 - 120065 + | selenocysteine synthase TERM 149 120429 - 120400 - g 81 -13.7 -3.14931 | gap 1 CTTAGTGCTGACCAA GCGG-GATTTGGTC GAT GACCAAACCGCCGC CAAGTTGACCATAGA Shewmr4_0107 120062 - 122083 + | selenocysteine-specific translation elongation factor SelB Shewmr4_0108 122191 - 123027 + | formate dehydrogenase family accessory protein FdhD TERM 150 123105 - 123119 + F 90 -4.3 -5.69473 | GTGTGGCAACAGGTA TAAGC CTTGT GCTTA TTTTTTTATAGTCTC Shewmr4_0109 123153 - 124367 + | putative inner membrane protein Shewmr4_0110 124367 - 124600 + | hypothetical protein TERM 151 124658 - 124629 - T 100 -13.7 -3.62096 | opp_overlap 124635, overlap 124635 GGCCATCACGGCAAA TAAAAAGCGCTGC ATTG GCAGCGCTTTTTG ATCTTAGCCTTGGCA TERM 152 124652 - 124635 - T 100 -12.7 -5.28942 | opp_overlap 124635, overlap 124629 CACGGCAAATAAAAA GCGCTGC ATTG GCAGCGC TTTTTGATCTTAGCC TERM 153 124635 - 124652 + T 100 -12.7 -4.87626 | opp_overlap 124635 124629 CACGGCAAATAAAAA GCGCTGC ATTG GCAGCGC TTTTTGATCTTAGCC Shewmr4_0111 126005 - 124662 - | peptidase M48, Ste24p TERM 154 125052 - 125066 + g 71 -7 -4.27467 | opp_overlap 125051 ATCATCATAGTTAAT GCTGGC TGC GCCCGC TTTCTCTTGGTATTC Shewmr4_0112 126736 - 126122 - | hypothetical protein TERM 155 126856 - 126830 - RH 75 -2.2 -5.38326 | opp_overlap 126845 126847 126849, overlap 126847 TCAATCAAATAAAAA CACTGTCCGCTT GAT AAGCCTAAAGTG TCCGCACTTTGGCTG TERM 156 127113 - 127099 - gR 87 -8.5 -4.46404 | opp_overlap 127097 TAATCAATATGAAAA CCGCC GCAGT GGCGG GACTTTTCGCCATGA TERM 157 127332 - 127296 - gR 72 -7.1 -4.0257 | overlap 127297 GCCAAAAACGAACAA CCGCCCACCCTCAAAGC CAT GCAGCGAGGATGGGTGA AGGGGCGTGATGAGT Shewmr4_0114 127839 - 127306 - | hypothetical protein Shewmr4_0113 127068 - 127454 + | hypothetical protein Shewmr4_0115 128583 - 127963 - | hypothetical protein Shewmr4_0116 128776 - 129159 + | hypothetical protein Shewmr4_0117 129392 - 130660 + | MscS mechanosensitive ion channel Shewmr4_0118 131280 - 130657 - | lysine exporter protein LysE/YggA TERM 158 131155 - 131169 + g 76 -4.2 -5.0133 | overlap 131146 131156 GACACTGCCAAGCCC TGTGGC TAT GCTACG TTTTTTGCCGAAATG Shewmr4_0119 131866 - 131306 - | phospholipid/glycerol acyltransferase Shewmr4_0120 131996 - 132445 + | hypothetical protein Shewmr4_0121 133269 - 132469 - | hypothetical protein TERM 159 133310 - 133272 - R 71 -8.2 -3.53164 | opp_overlap 133272 133274 AGAGTATGCACATAA CAGGCTAAGTTTATCCAA GGA TAAGGTTAACTTAGCCTG TCTATCGGCAAATGA Shewmr4_0122 134990 - 133332 - | hypothetical protein TERM 160 134829 - 134810 - G 100 -7 -5.22006 | overlap 134814 CGAGGACAACAAAAA CGATGGCC AATA GGCCGCCG TGCTCGAGCAATTCA Shewmr4_0123 135768 - 135169 - | multiple antibiotic resistance (MarC)-related proteins TERM 161 135435 - 135417 - G 72 -9.6 -3.36803 | overlap 135405 TAAGCGCAGCCAGAA TCGATGGC CCC GCCATCAA AGGAATGGCCATAGG TERM 162 135719 - 135705 - G 76 -8.6 -4.15854 | AAATCGACGCGAAAA TCGGTA AAT TACCGA GGGGATCCATGATCA Shewmr4_0124 136100 - 138955 + | TonB-dependent receptor TERM 163 139040 - 139019 - f 100 -13.1 -5.27779 | opp_overlap 139019 TTCAACATCAAAAAA GGGCTCAAA TTAA TTTGAGCCC TTTTTCTTTTATGTC TERM 164 139019 - 139040 + F 100 -13.1 -5.58522 | opp_overlap 139019 TTCAACATCAAAAAA GGGCTCAAA TTAA TTTGAGCCC TTTTTCTTTTATGTC TERM 165 139656 - 139668 + G 71 -10.5 -3.03124 | GCGATGATGCGCGCA CCCGC ACA GCGGG TGTTAGGGGATGCAG Shewmr4_0125 139356 - 142166 + | peptidase M6, immune inhibitor A TERM 166 142205 - 142187 - T 100 -8.9 -4.8622 | opp_overlap 142187 TGTGCTAACGAAAAA TGCCTCT GATAT AGAGGCA TTTTTGTTTTTAGCA TERM 167 142187 - 142205 + T 100 -9.6 -5.61881 | opp_overlap 142187 TGTGCTAACGAAAAA TGCCTCTG ATA TAGAGGCA TTTTTGTTTTTAGCA Shewmr4_0126 142799 - 142227 - | chorismate lyase Shewmr4_0127 142901 - 143311 + | flagellar basal body-associated protein FliL-like protein Shewmr4_0128 143371 - 144465 + | putative SAM-dependent methyltransferase TERM 168 144468 - 144490 + T 100 -14.9 -4.72986 | opp_overlap 144468 TAGCGGGACATAAAA CACAGGCGC CGAGA GCGCCTGTG TTTTTAGTCAGCCTC TERM 169 144490 - 144468 - T 100 -15.6 -4.53303 | opp_overlap 144468 TAGCGGGACATAAAA CACAGGCGCC GAG AGCGCCTGTG TTTTTAGTCAGCCTC Shewmr4_0129 144804 - 144508 - | hypothetical protein Shewmr4_0130 145492 - 144830 - | hypothetical protein Shewmr4_0131 146291 - 145530 - | molybdopterin biosynthesis protein MoeB Shewmr4_0132 147637 - 146303 - | molybdopterin molybdochelatase TERM 170 146503 - 146479 - G 76 -7.7 -4.3739 | opp_overlap 146492 146499 146502, overlap 146480 CATTGCGGGATAAAA TGCCGCGCTGA TAC TCGACGCGGCC GGGCTGTTTACGCAC TERM 171 146502 - 146480 - G 76 -11.2 -3.22113 | opp_overlap 146492 146499, overlap 146479 ATTGCGGGATAAAAT GCCGCGCTGA TAC TCGACGCGGC CGGGCTGTTTACGCA TERM 172 147004 - 146987 - G 82 -6.9 -4.83169 | overlap 146989 ACCTGTGGAGAAAAA CGCCACC TTAA GTTGGCG GTAAACCCGCACCTG Shewmr4_0133 147885 - 148421 + | Ferritin, Dps family protein TERM 173 148456 - 148443 - T 86 -8.1 -4.62069 | opp_overlap 148443 TCGCTAGGGTAAAAA GCAGC TTAG GCTGC TTTTTTATTGAAGAT TERM 174 148443 - 148456 + T 100 -8.1 -5.45652 | opp_overlap 148443 TCGCTAGGGTAAAAA GCAGC TTAG GCTGC TTTTTTATTGAAGAT Shewmr4_0134 151732 - 148499 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 175 149690 - 149668 - G 70 -11.2 -2.55545 | opp_overlap 149668 149664, overlap 149665 CTTGTAACAAGAGAT CGCCCATGGC ATG GCCTTGGACG TCATTGATATATTTG TERM 176 151791 - 151775 - R 95 -7.3 -5.4251 | opp_overlap 151775 TGGAGACATAAAAAA TCAAGGC ATA ACCTTGA TGAGTTGAAAACGAA TERM 177 152064 - 152042 - R 100 -11.2 -5.30616 | opp_overlap 152042 GCAGGCAAATAAAAA GGACGCGGGC AGA GCCGACGTCC TTTAAATCGAATTCC TERM 178 152042 - 152064 + r 75 -9 -3.66874 | opp_overlap 152042 GCAGGCAAATAAAAA GGACGCGGGC AGA GCCGACGTCC TTTAAATCGAATTCC Shewmr4_0135 152747 - 152094 - | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 179 153388 - 153410 + H 71 -8.4 -3.57144 | overlap 153390 ATTAACTTATTGGCT TGCCGTCGTG CCC CACGATGGTG TTTGAACGTCACAAG TERM 180 153390 - 153408 + H 81 -11 -3.36515 | overlap 153388 TAACTTATTGGCTTG CCGTCGTG CCC CACGATGG TGTTTGAACGTCACA TERM 181 153620 - 153597 - g 86 -11.8 -3.96327 | gap 1 ATGCGCGACGATAAA CGCCAAGATCC TAA GG-TCTTGGCG CATCTGAATGCCGAA TERM 182 155098 - 155088 - g 70 -2.4 -4.96501 | GGCGATAAAAATAAA GTGG TGG CCTC GGGCGGCAGTGCTGG Shewmr4_0136 153435 - 155570 + | oligopeptidase B TERM 183 155654 - 155615 - g 71 -10.6 -3.17571 | opp_overlap 155641, overlap 155638 155640 AAGCCGCTAATTCAA CTCCCTCGGCTAGCCCCC AAAA AGGGGCTAGCCAAGCGCC AGCTGTTAACCAAAC Shewmr4_0137 155593 - 156012 + | excinuclease ABC subunit C Shewmr4_0138 156973 - 156392 - | hypothetical protein TERM 184 156939 - 156954 + g 87 -4.8 -5.47846 | opp_overlap 156939 TACAGGTCAATACGA TCAATT AGTA AATTGA TTTTCTTTTTTAGTT Shewmr4_0139 158434 - 157532 - | LysR family transcriptional regulator Shewmr4_0140 158518 - 159207 + | (Acyl-carrier-protein) phosphodiesterase Shewmr4_0141 159200 - 159673 + | CMP/dCMP deaminase, zinc-binding Shewmr4_0142 160162 - 159659 - | hypothetical protein TERM 185 159869 - 159888 + g 74 -8.6 -4.08974 | CTGCTGCTGGCTCAA TGCGGCAT TCTC ATGCTGCA TTTGTATAATAGCCT TERM 186 160318 - 160291 - R 90 -4.2 -5.60993 | opp_overlap 160295, overlap 160293 GGTCGCACAAAAAAA GATGCCACTA CAAGGGGT TAGTGGCATA AAGTGCATAAGAATG TERM 187 160316 - 160293 - R 76 -6.8 -4.45201 | opp_overlap 160295, overlap 160291 TCGCACAAAAAAAGA TGCCACTA CAAGGGGT TAGTGGCA TAAAGTGCATAAGAA Shewmr4_0143 161228 - 160452 - | putative lipoprotein TERM 188 162236 - 162210 - g 100 -16.7 -4.2828 | opp_overlap 162212 162216 CGTTATGTACTAAAA CACCAAGGGCA ACAGG TGCCCTTGGTG TATAGCATTAGCGCG TERM 189 162212 - 162234 + G 80 -13.5 -2.91681 | opp_overlap 162210, overlap 162216 TTATGTACTAAAACA CCAAGGGCA ACAGG TGCCCTTGG TGTATAGCATTAGCG Shewmr4_0144 161499 - 162266 + | methyltransferase type 12 Shewmr4_0145 164267 - 162291 - | peptidase M14, carboxypeptidase A TERM 190 163549 - 163566 + g 74 -11.3 -3.17392 | CCCATATTGACTGGG CCGCGTT GATT AACGCGG TTAAATTCGCCGCTG TERM 191 164337 - 164318 - R 100 -13.6 -3.14564 | opp_overlap 164315 GTATCTTTTCATTAA GCCCTTGC GAGT GCAAGGGC TGCCAAGGGTTTATC Shewmr4_0146 165517 - 164399 - | hypothetical protein TERM 192 165728 - 165755 + r 86 -11.4 -3.33261 | opp_overlap 165728 CTCAGCTATAAAAAA GGCTTGAATAAG TAAG CCTATTCAAGCC TTAGTATATCAATGT TERM 193 165755 - 165728 - R 100 -13.6 -5.28176 | opp_overlap 165728 CTCAGCTATAAAAAA GGCTTGAATAAG TAAG CCTATTCAAGCC TTAGTATATCAATGT Shewmr4_0147 167010 - 165781 - | sodium:dicarboxylate symporter Shewmr4_0148 167411 - 167824 + | hypothetical protein TERM 194 167893 - 167864 - T 100 -12.9 -3.52192 | gap 1, opp_overlap 167890 CTTAAGTTGAGATAA GCGCCCCCTGAGGT ATC ACTTCAGGGG-CGC ACTTCAGGGGCGCTA Shewmr4_0149 169653 - 167914 - | hypothetical protein Shewmr4_0150 170060 - 171523 + | OmpA/MotB domain-containing protein TERM 195 171555 - 171583 + T 100 -15.4 -5.4433 | opp_overlap 171555 CAATAGATATAAAAA TGGCGTCAACTC TTGTC GAGTTGGCGCCA TTTTTGTTTATCTGT TERM 196 171583 - 171555 - T 100 -13.2 -5.09685 | opp_overlap 171555 CAATAGATATAAAAA TGGCGTCAACTC TTGTC GAGTTGGCGCCA TTTTTGTTTATCTGT Shewmr4_0151 173202 - 171643 - | AbgT putative transporter TERM 197 172706 - 172679 - G 70 -3.2 -4.83169 | overlap 172680 172681 ACTGTTGCAGAAAAA CCGCCGGATACG CCAG CAAAAGCGGCGG CAATACCGGCTAGGG TERM 198 173408 - 173359 - R 100 -15.9 -3.35849 | opp_overlap 173371, overlap 173371 GTCATGAAATCAACA GGCAAATAAAAAGCGCGGGTTCA TCGC TGACCCCGCGCTTTTTACTCAAC AATGTGTTTGATTAC TERM 199 173396 - 173371 - R 100 -14.7 -5.31519 | opp_overlap 173371, overlap 173359 ACAGGCAAATAAAAA GCGCGGGTTCA TCGC TGACCCCGCGC TTTTTACTCAACAAT TERM 200 173371 - 173396 + r 100 -14.7 -4.7254 | opp_overlap 173371 173359 ACAGGCAAATAAAAA GCGCGGGTTCA TCGC TGACCCCGCGC TTTTTACTCAACAAT Shewmr4_0152 174991 - 173450 - | phosphoenolpyruvate carboxykinase TERM 201 174863 - 174843 - G 70 -3.2 -4.89477 | overlap 174844 TCTTTAACAATAAAA CGATCGCC AGGAG AGCGACCA GTGCGGGTACCGGTT TERM 202 175172 - 175155 - R 100 -12.7 -5.24129 | GGGGGGGACAAAAAA GGGCACC CTGA GGTGCCC TGCTAACAGTAAATG hslO 176053 - 175193 - | Hsp33-like chaperonin Shewmr4_0154 176488 - 176090 - | RNA-binding S4 domain-containing protein TERM 203 176517 - 176507 - H 79 -6.8 -4.66537 | GTCTCCAAGATAAAA GCTC GAT GAGC TCACATGCTGAGCAA Shewmr4_0155 176740 - 177666 + | general secretion pathway protein C TERM 204 179511 - 179487 - g 87 -7.9 -4.93316 | overlap 179490 179508 TAAGAAGACCAAAAA GAACCTGATGA TCT TCATCAAGCCC ACCATTATCCGTGAT TERM 205 179508 - 179490 - g 82 -8.2 -4.53398 | overlap 179487 GAAGACCAAAAAGAA CCTGATGA TCT TCATCAAG CCCACCATTATCCGT Shewmr4_0156 177691 - 179793 + | general secretion pathway protein D Shewmr4_0157 179790 - 181355 + | type II secretion system protein E (GspE) TERM 206 182552 - 182582 + G 83 -3.2 -5.42514 | overlap 182555 CATTCTGCAACCTAT CTTGGCACTGAACA ATT TGATTAGTGGCTAG TTTTTTAATTTATGG Shewmr4_0158 181359 - 182582 + | general secretion pathway protein F Shewmr4_0159 182658 - 183092 + | general secretion pathway protein G TERM 207 183110 - 183145 + F 91 -8.2 -4.71426 | opp_overlap 183103, overlap 183111 TGTTAAAGCTGCGCC ACGCCGGCTTCACCTT AATG GAGGTGATGCTGGTGA TTTTGTTAATGGGAC TERM 208 183111 - 183144 + F 89 -11.7 -3.42374 | opp_overlap 183103, overlap 183110 GTTAAAGCTGCGCCA CGCCGGCTTCACCTT AATG GAGGTGATGCTGGTG ATTTTGTTAATGGGA TERM 209 183520 - 183510 - g 78 -2.4 -5.29716 | GGAAGATAAGAAAAA GCAC CCA GAGC CGCAGATTTTGCTGT Shewmr4_0160 183154 - 183666 + | general secretion pathway protein H Shewmr4_0161 183653 - 184021 + | general secretion pathway protein I TERM 210 184041 - 184031 - g 71 -6.8 -4.15508 | AACTAATGCTCAAAA GGGT TTT ACCC TGCTGGAAATGCTGA TERM 211 184057 - 184068 + G 76 -5.8 -4.66953 | TGCTGGAAATGCTGA TCGC GATT GCGA TTTTTGCCATGTTAG TERM 212 184310 - 184336 + G 74 -7.2 -4.16016 | opp_overlap 184332 GGCTTTAGTTTTTTA CCGTTTAGGCTG GCT CAACCCAGACGG TTTATTGCCCCGTGG Shewmr4_0162 184002 - 184763 + | general secretion pathway protein J TERM 213 185153 - 185138 - g 73 -9 -3.75897 | AACGGTCAACCTAAA TTGCCG TTAG CGGCAA AGCAATACAAAGCGT Shewmr4_0163 184760 - 185758 + | general secretion pathway protein K Shewmr4_0164 185807 - 186994 + | general secretion pathway protein L TERM 214 187052 - 187065 + G 73 -5.2 -4.73613 | opp_overlap 187049, overlap 187048 187061 CGAGCAGCAAATCGT CGGC TTCGGC GCCG TTTTCTTAGTGATCG Shewmr4_0165 186996 - 187472 + | general secretion pathway M protein Shewmr4_0166 187487 - 188248 + | type II secretion system protein N TERM 215 188295 - 188280 - T 86 -10.4 -3.90318 | opp_overlap 188280 GCATGATTCGATAAA GGCACC TTAG GGTGCC TTTTGTATCTTAAGG TERM 216 188280 - 188295 + T 100 -10.4 -4.67943 | opp_overlap 188280 GCATGATTCGATAAA GGCACC TTAG GGTGCC TTTTGTATCTTAAGG Shewmr4_0167 188975 - 188313 - | HAD family hydrolase Shewmr4_0168 189257 - 189664 + | hypothetical protein TERM 217 189695 - 189683 - f 100 -10.5 -4.3467 | opp_overlap 189683 ATGTCGACATTAAAA GGGGC TTA GCCCC TTTTTTGTTGGTGAG TERM 218 189683 - 189695 + F 100 -10.5 -5.5112 | opp_overlap 189683 ATGTCGACATTAAAA GGGGC TTA GCCCC TTTTTTGTTGGTGAG nudE 189902 - 190453 + | ADP-ribose diphosphatase NudE Shewmr4_0170 190524 - 191336 + | 3'(2'),5'-bisphosphate nucleotidase Shewmr4_0171 191343 - 191786 + | GCN5-related N-acetyltransferase TERM 219 191830 - 191807 - f 100 -12.4 -3.60971 | opp_overlap 191807 AGTTCAACCTCGAAA TGGCGCCCTC GATT GAGGGCGTCA TTTTTTTATGCGTTA TERM 220 191807 - 191830 + F 100 -14.6 -5.66684 | opp_overlap 191807 AGTTCAACCTCGAAA TGGCGCCCTC GATT GAGGGCGTCA TTTTTTTATGCGTTA Shewmr4_0172 192017 - 192628 + | TetR family transcriptional regulator TERM 221 192770 - 192792 + G 81 -6.2 -4.98616 | TGTTTGTCAATTTGG CGGCGGGG GTCTTTA TCCTGCCG TTTTTCCTATTTTCG TERM 222 193550 - 193563 + G 76 -8.1 -4.15061 | CGATTCCTTCTGCAC CTGCG GATG CGCAG TTTGTCTATGGCTTA Shewmr4_0173 192619 - 194481 + | phospholipid/glycerol acyltransferase TERM 223 194497 - 194532 + T 100 -9.9 -4.7416 | gap 1, opp_overlap 194500 194505, overlap 194500 194505 CTTAACTAGATAGAT AAAGAAAACCGTG-GC AGTTA GCACACGGTTTTCTTG TTTTTAGCCTTTTGA TERM 224 194500 - 194529 + T 100 -11.6 -4.45259 | gap 1, opp_overlap 194500 194505, overlap 194497 194505 AACTAGATAGATAAA GAAAACCGTG-GC AGTTA GCACACGGTTTTC TTGTTTTTAGCCTTT TERM 225 194529 - 194500 - T 100 -11.6 -4.1897 | gap 1, opp_overlap 194500 194497 194505, overlap 194505 AACTAGATAGATAAA GAAAACCGTG-GC AGTTA GCACACGGTTTTC TTGTTTTTAGCCTTT TERM 226 194505 - 194524 + T 85 -5.7 -5.16681 | gap 1, opp_overlap 194500 194505, overlap 194500 194497 GATAGATAAAGAAAA CCGTG-GC AGTTA GCACACGG TTTTCTTGTTTTTAG TERM 227 194524 - 194505 - T 82 -5.7 -5.07523 | gap 1, opp_overlap 194505 194500 194497, overlap 194500 GATAGATAAAGAAAA CCGTG-GC AGTTA GCACACGG TTTTCTTGTTTTTAG Shewmr4_0174 195690 - 194536 - | tRNA 2-selenouridine synthase TERM 228 195227 - 195215 - G 73 -3.3 -5.00616 | opp_overlap 195203, overlap 195216 CGTCGTTTTAAAAAA TCGGT TTT ACCGC TTCCCGTCATACCGC Shewmr4_0175 196748 - 195690 - | selenophosphate synthase TERM 229 196821 - 196796 - R 89 -12.6 -2.8214 | opp_overlap 196794 196793 196796, overlap 196793 196791 196798 ATCATCATAATAGGA TACGGCCACC ATGCAA GGCGGCCGTA TGATTTTTACCGAGA TERM 230 196796 - 196821 + r 77 -10.4 -3.23708 | opp_overlap 196796 196793 196791 196798, overlap 196794 196793 ATCATCATAATAGGA TACGGCCACC ATGCAA GGCGGCCGTA TGATTTTTACCGAGA TERM 231 196819 - 196798 - R 79 -10.8 -2.9544 | opp_overlap 196796 196794 196793, overlap 196796 196793 196791 CATCATAATAGGATA CGGCCACC ATGCAA GGCGGCCG TATGATTTTTACCGA Shewmr4_0176 197972 - 196845 - | Delta-9 acyl-phospholipid desaturase TERM 232 197301 - 197290 - G 71 -5.8 -4.39828 | AACATCGCCAGAAAA CCGT TGTC ACGG GCGGTGTTTTTATCG Shewmr4_0177 198095 - 198709 + | DNA-binding transcriptional repressor FabR TERM 233 198757 - 198735 - T 100 -16.4 -4.11692 | opp_overlap 198735 198739, overlap 198739 GATTTAGCCCCAAAA CAAAGGAGCC AAT GGCTCCTTTG TTTTTAGGTACATAG TERM 234 198735 - 198757 + T 100 -16.4 -4.67353 | opp_overlap 198735 198739, overlap 198739 GATTTAGCCCCAAAA CAAAGGAGCC AAT GGCTCCTTTG TTTTTAGGTACATAG TERM 235 198739 - 198753 + T 100 -11.4 -4.89063 | opp_overlap 198739 198735, overlap 198735 TAGCCCCAAAACAAA GGAGCC AAT GGCTCC TTTGTTTTTAGGTAC TERM 236 198753 - 198739 - T 100 -11.4 -4.65933 | opp_overlap 198735 198739, overlap 198735 TAGCCCCAAAACAAA GGAGCC AAT GGCTCC TTTGTTTTTAGGTAC Shewmr4_0178 199876 - 198779 - | tRNA (uracil-5-)-methyltransferase Shewmr4_0179 200018 - 200836 + | glutamate racemase Shewmr4_0180 201312 - 200848 - | RNP-1 like RNA-binding protein TERM 237 201708 - 201682 - H 81 -7.2 -4.66609 | overlap 201684 TACTTGACGCAAAAA CGGGAATGCGTA AAA TACGCAGCCCTG ACCCGCTGAAATCAC TERM 238 203577 - 203592 + H 79 -7.6 -4.28254 | GCATTTTCGACATTC GGTACA TCAG TGTACC TTTTGAGTGTTCACA TERM 239 203862 - 203892 + H 100 -8.5 -5.00884 | opp_overlap 203861 AATCTGGTTAGAGAT GCCAAAGATAA ACTGAAAAA TTATCTTTGGC TTTTTTAAGCCCGCT TERM 240 204016 - 203976 - H 76 -2.7 -5.27779 | opp_overlap 203983 203988 203990 203995, overlap 203990 GTTAATACGAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 241 204596 - 204584 - H 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 242 205394 - 205378 - H 85 -9.4 -4.08546 | overlap 205391 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 243 205848 - 205876 + H 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 244 207062 - 207050 - H 72 -6.3 -4.2586 | TTAGACGAATACAAA CACTT AAG AAGTG GTACTCAATCCAGCT TERM 245 207263 - 207295 + H 100 -11.4 -4.24123 | opp_overlap 207270, overlap 207270 AAGCGCCTAATTAAA CGATAAAGCCAGCT GAATA AGCTGGCTTTTTTG TTTTCGCGTTCTTAA TERM 246 207270 - 207288 + H 100 -10.3 -5.79595 | opp_overlap 207270, overlap 207263 TAATTAAACGATAAA GCCAGCT GAATA AGCTGGC TTTTTTGTTTTCGCG TERM 247 207288 - 207270 - H 91 -10.3 -4.17448 | opp_overlap 207270 207263 TAATTAAACGATAAA GCCAGCT GAATA AGCTGGC TTTTTTGTTTTCGCG Shewmr4_0181 207421 - 208476 + | UDP-N-acetylmuramate dehydrogenase TERM 248 208690 - 208711 + G 74 -2.3 -5.13722 | gap 1, opp_overlap 208693, overlap 208691 208695 CTCTGCTCGGTTAAT TCAGTCGATT GAT AATCG-CTGC TTTTATTTTGATGAG Shewmr4_0182 208469 - 209428 + | biotin--protein ligase Shewmr4_0183 210380 - 209430 - | pantothenate kinase Shewmr4_0184 210493 - 210624 + | hypothetical protein TERM 249 210677 - 210690 + F 74 -6.7 -4.25283 | CCCGAGTTCGACTCT TGGTG CCGG CACCA TTTTACTGGAGGGGT TERM 250 210943 - 210927 - f 76 -10.9 -2.62616 | overlap 210929 TCAGTTGGTAGAGCA CACCCTT GGT AAGGGTG AGGTCGGCAGTTCGA TERM 251 211014 - 211038 + F 85 -4.4 -5.4492 | gap 1, overlap 211016 TACCTAAATAATCGG TTCGATGTCAT TTAT ATG-CATCGGA TTTTTTCTATATGTA Shewmr4_0185 211092 - 212276 + | elongation factor Tu TERM 252 212298 - 212327 + F 84 -10.9 -3.69734 | opp_overlap 212305, overlap 212305 ACTTAGATATAGTGC TGAAAAAGGAAGC TTAG GCTTCCTTTTTTG TTTAAGTCGATTATT TERM 253 212305 - 212320 + F 100 -9 -5.65927 | opp_overlap 212305, overlap 212298 TATAGTGCTGAAAAA GGAAGC TTAG GCTTCC TTTTTTGTTTAAGTC TERM 254 212320 - 212305 - f 100 -9 -4.59109 | opp_overlap 212305 212298 TATAGTGCTGAAAAA GGAAGC TTAG GCTTCC TTTTTTGTTTAAGTC secE 212554 - 212925 + | preprotein translocase subunit SecE Shewmr4_0187 212935 - 213486 + | transcription antitermination protein nusG TERM 255 213520 - 213505 - f 75 -3.2 -5.23644 | opp_overlap 213514 213517, overlap 213506 AATTAAATACAAAAA TCCGTT TGGC AACGGG GGCGGATTTCTATAT TERM 256 213514 - 213550 + F 100 -16.7 -4.07568 | opp_overlap 213506 213505, overlap 213517 CAAAAATCCGTTTGG CAACGGGGGCGGATT TCTATAT AATCCGCACCCGTTG TTTTCGGGGGAGCAC TERM 257 213517 - 213547 + F 100 -12.6 -4.17048 | opp_overlap 213506 213505, overlap 213514 AAATCCGTTTGGCAA CGGGGGCGGATT TCTATAT AATCCGCACCCG TTGTTTTCGGGGGAG TERM 258 213782 - 213760 - g 80 -2.7 -5.36441 | overlap 213762 CCCGTACAGAAAAAA TGGAAAAAG GCATG CCTATTCCA GTCGTGATCACTGTA rplK 213615 - 214043 + | 50S ribosomal protein L11 rplA 214048 - 214749 + | 50S ribosomal protein L1 TERM 259 214755 - 214791 + F 76 -11 -2.53015 | opp_overlap 214758 214759, overlap 214759 AGCTAACTAATTTTA CAAGGTACGTGCATTA GTCTA TAATGCGCGCACTTTG TGGGTTGAAGCCTGT TERM 260 214759 - 214787 + F 77 -8.2 -3.97368 | opp_overlap 214758 214759, overlap 214755 AACTAATTTTACAAG GTACGTGCATTA GTCTA TAATGCGCGCAC TTTGTGGGTTGAAGC TERM 261 215157 - 215147 - g 73 -3.2 -5.00616 | GGTCTGCGTAAAAAA GCTC GCG AAGC TGGTGTTTATGTACG rplJ 215015 - 215515 + | 50S ribosomal protein L10 TERM 262 215533 - 215501 - f 77 -6.4 -4.72272 | gap 1, opp_overlap 215504 215507 CTGCGCGATCAAAAA CAAGAAGCC-GCTTA ATTT TAAGCTGGCTGCTTA ATAAAATTGAATTCA TERM 263 215752 - 215733 - g 71 -5.1 -4.44667 | CTGCTGAAGAACAAA CAGAATT CAACGT AATTCTG ACTGCTCACGGCGAC rplL 215570 - 215941 + | 50S ribosomal protein L7/L12 TERM 264 215981 - 216006 + F 100 -13.3 -5.08169 | AGCCAATTGGGTGGA GGCTGGCGGTT TTTT AACCGTCGGCC TTTTTTGCGCTATAT Shewmr4_0192 216244 - 220221 + | DNA-directed RNA polymerase, beta subunit TERM 265 220279 - 220254 - f 82 -10.4 -3.65812 | opp_overlap 220253 220252, overlap 220255 CGTTTGGCAACAGAA TGGTGCTCCG TGAGAG CGGAGCACCC GGTTTAACTCCTTCA TERM 266 220278 - 220255 - f 95 -13.9 -2.79273 | opp_overlap 220253 220252, overlap 220254 GTTTGGCAACAGAAT GGTGCTCCG TGAGAG CGGAGCACC CGGTTTAACTCCTTC Shewmr4_0193 220305 - 224522 + | DNA-directed RNA polymerase subunit beta' TERM 267 224517 - 224501 - f 83 -10.9 -3.56643 | opp_overlap 224500 CGCAGACCTGTTAAA CTTGGCT GGC AGCCAAG ATTAAGTGAACAGTT TERM 268 224558 - 224544 - f 100 -12.8 -5.06816 | opp_overlap 224544 AGTTTGTAACAAAAA GGCGCC AAT GGCGCC TTTTTTATTGGAAAA TERM 269 224544 - 224558 + F 100 -12.8 -5.4505 | opp_overlap 224544 AGTTTGTAACAAAAA GGCGCC AAT GGCGCC TTTTTTATTGGAAAA rpsL 224702 - 225076 + | 30S ribosomal protein S12 Shewmr4_0195 225157 - 225627 + | 30S ribosomal protein S7 TERM 270 225633 - 225656 + F 100 -16.8 -4.03167 | CCGTTGGTAATCTGA TGGTGTGGGC TTAA GCCCACACCA TTGTTGTTGATATTG TERM 271 227028 - 226991 - g 73 -5.5 -4.7219 | opp_overlap 226991 CAGACCAAGATAAAA TGGGTATCGCGCTGCAA AAAC TCGCAGCGGAAGATCCA TCCTTCCGGGTTGAG TERM 272 227516 - 227496 - g 71 -5.3 -4.57073 | opp_overlap 227496 227494 227492 TATGGGCTTCAAAAA GGGTGCGCT CGA AGCGAATCC TGTGTTGCTCGAGCC Shewmr4_0196 225706 - 227802 + | elongation factor G TERM 273 227832 - 227847 + F 72 -7.6 -3.78934 | ATAAATGTAATATGG TCCTGT TGAT ACAGGA TTATTCTGAAAAGAA Shewmr4_0197 227874 - 229058 + | elongation factor Tu TERM 274 229080 - 229109 + F 100 -13.1 -4.14511 | opp_overlap 229087, overlap 229087 ACTTAGATATAGTAC TGAAAAAGGAAGC TTAG GCTTCCTTTTTTA TTTTGGGCTGGCGTT TERM 275 229087 - 229102 + F 100 -9 -5.79595 | opp_overlap 229087, overlap 229080 TATAGTACTGAAAAA GGAAGC TTAG GCTTCC TTTTTTATTTTGGGC TERM 276 229102 - 229087 - f 100 -9 -4.69664 | opp_overlap 229087 229080 TATAGTACTGAAAAA GGAAGC TTAG GCTTCC TTTTTTATTTTGGGC TERM 277 229323 - 229363 + F 80 -2.7 -5.4251 | gap 2, opp_overlap 229323, overlap 229326 CGAACGGTTAAATCA TCTCGCTCT-GCTT-TTCC AGTAA GGAAGAAGCTAGAGGGTGA TTTTTTATGTGTCCA rpsJ 229397 - 229708 + | 30S ribosomal protein S10 TERM 278 230286 - 230266 - g 71 -6.9 -4.21194 | opp_overlap 230266 TGTTACTACTCAAAA TCTAGACGT TGT ACGTGTAGA TGTTGAACGTAACCT rplC 229736 - 230374 + | 50S ribosomal protein L3 rplD 230392 - 230997 + | 50S ribosomal protein L4 rplW 230994 - 231299 + | 50S ribosomal protein L23 rplB 231316 - 232140 + | 50S ribosomal protein L2 rpsS 232155 - 232433 + | 30S ribosomal protein S19 rplV 232449 - 232781 + | 50S ribosomal protein L22 rpsC 232791 - 233483 + | 30S ribosomal protein S3 TERM 279 233562 - 233583 + G 87 -9.5 -4.34402 | GCGGTCTAGCGAACG GTACCGAAG TTAG CTTTGGTAC TTTTGGTCTGAAAGC rplP 233495 - 233905 + | 50S ribosomal protein L16 Shewmr4_0207 233905 - 234096 + | 50S ribosomal protein L29 Shewmr4_0208 234096 - 234344 + | SSU ribosomal protein S17P TERM 280 234363 - 234391 + F 100 -12.5 -5.20216 | opp_overlap 234367 TATTAGGTATTTAGG TAAACGGCTCCAG TAT TTGGGGCCGTTTG TTTTTTAATACTATA TERM 281 234387 - 234367 - f 73 -8.2 -3.66999 | opp_overlap 234363 AGGTATTTAGGTAAA CGGCTCCA GTATT TGGGGCCG TTTGTTTTTTAATAC rplN 234523 - 234891 + | 50S ribosomal protein L14 TERM 282 235066 - 235043 - g 79 -7.4 -4.55446 | CAAGAAACACCAAAA GCCAAACCCA CAAC TGGGTGTAGC CGGTGGTATTGTTGA TERM 283 235199 - 235179 - g 80 -4.7 -5.09173 | GAAGACGGCAAAAAA GTTCGTTTC TTC AAATCGAAC AGTGAACTCGTTAAG rplX 234903 - 235217 + | 50S ribosomal protein L24 rplE 235230 - 235769 + | 50S ribosomal protein L5 rpsN 235780 - 236085 + | 30S ribosomal protein S14 rpsH 236110 - 236502 + | 30S ribosomal protein S8 rplF 236513 - 237046 + | 50S ribosomal protein L6 rplR 237057 - 237407 + | 50S ribosomal protein L18 rpsE 237420 - 237923 + | 30S ribosomal protein S5 rpmD 237930 - 238112 + | 50S ribosomal protein L30 rplO 238116 - 238550 + | 50S ribosomal protein L15 TERM 284 239061 - 239045 - g 71 -10.9 -3.16564 | opp_overlap 239047 TTGTGAGCTTAGTAA CAGGAAC TAT GTTCCTG ATGTGGCTAGGTGAA secY 238558 - 239898 + | preprotein translocase subunit SecY rpmJ 239920 - 240033 + | 50S ribosomal protein L36 TERM 285 240038 - 240073 + F 74 -7.6 -3.93256 | opp_overlap 240040 240042, overlap 240040 240041 GTCAAGGCTAATAGA AAGATTGTTCAGCCCA ATGT TGGGCTGAACAAAATA TTGTTTGCAAATCTG TERM 286 240040 - 240071 + F 80 -10.2 -3.55202 | opp_overlap 240040 240042, overlap 240038 240041 CAAGGCTAATAGAAA GATTGTTCAGCCCA ATGT TGGGCTGAACAAAA TATTGTTTGCAAATC TERM 287 240071 - 240040 - f 91 -10.2 -4.21439 | opp_overlap 240040 240038 240041, overlap 240042 CAAGGCTAATAGAAA GATTGTTCAGCCCA ATGT TGGGCTGAACAAAA TATTGTTTGCAAATC TERM 288 240041 - 240070 + F 93 -13.7 -2.72639 | opp_overlap 240040 240042, overlap 240040 240038 AAGGCTAATAGAAAG ATTGTTCAGCCCA ATGT TGGGCTGAACAAA ATATTGTTTGCAAAT TERM 289 240069 - 240042 - f 100 -17.2 -3.69842 | opp_overlap 240041 240040 240038, overlap 240040 AGGCTAATAGAAAGA TTGTTCAGCCCA ATGT TGGGCTGAACAA AATATTGTTTGCAAA rpsM 240149 - 240505 + | 30S ribosomal protein S13 Shewmr4_0222 240520 - 240912 + | 30S ribosomal protein S11 rpsD 240944 - 241564 + | 30S ribosomal protein S4 Shewmr4_0224 241589 - 242578 + | DNA-directed RNA polymerase subunit alpha rplQ 242619 - 243014 + | 50S ribosomal protein L17 TERM 290 243031 - 243061 + T 100 -15.6 -4.67168 | opp_overlap 243028 243038, overlap 243038 TAAGGCTACAAAGTT TGAAAAACCGGGCT CTA AGCCCGGTTTTTTG TTTTTAGCACTTTTT TERM 291 243054 - 243038 - T 100 -13.7 -4.6526 | opp_overlap 243031 243038 ACAAAGTTTGAAAAA CCGGGCT CTA AGCCCGG TTTTTTGTTTTTAGC TERM 292 243038 - 243054 + T 100 -13.7 -5.93252 | opp_overlap 243038, overlap 243031 ACAAAGTTTGAAAAA CCGGGCT CTA AGCCCGG TTTTTTGTTTTTAGC Shewmr4_0226 244083 - 243079 - | hypothetical protein TERM 293 244166 - 244153 - R 100 -8.1 -5.4505 | opp_overlap 244153 244152 TCGGCCAATAAAAAA GCCTC CGAA GAGGC CTTTTAGGTATTTAG Shewmr4_0227 244681 - 244196 - | cytochrome c-type biogenesis protein CcmE Shewmr4_0228 244878 - 244678 - | Heme exporter protein D (CcmD) Shewmr4_0229 245624 - 244878 - | heme exporter protein CcmC Shewmr4_0230 246312 - 245626 - | heme exporter protein CcmB Shewmr4_0231 246974 - 246324 - | cytochrome c biogenesis protein CcmA TERM 294 246388 - 246417 + g 70 -10.1 -3.33315 | gap 1 ATAATGCCCATATCT TGGTGGGTG-GTGA GGA TCACACAGCCACCA TTATCCGCATGTTGA Shewmr4_0232 247300 - 247599 + | cytochrome c, class I TERM 295 247611 - 247643 + T 81 -11.6 -2.89564 | gap 1, opp_overlap 247621, overlap 247621 GTAATTTTTCAGTGT TAACAAAAAACCGGC ATTA GCCGGTTTTTT-TTA TGTCTGCGCTAAGCC TERM 296 247621 - 247634 + T 100 -9.5 -6.06529 | opp_overlap 247621, overlap 247611 AGTGTTAACAAAAAA CCGGC ATTA GCCGG TTTTTTTTATGTCTG TERM 297 247634 - 247621 - T 100 -9.5 -5.45652 | opp_overlap 247621 247611 AGTGTTAACAAAAAA CCGGC ATTA GCCGG TTTTTTTTATGTCTG Shewmr4_0233 248936 - 247689 - | TPR repeat-containing protein TERM 298 248981 - 248968 - H 79 -8.1 -4.37886 | TTAGTTTGCATAAAA GCGGT TGTT ACCGC CGGCTTGGAAGCAAG Shewmr4_0234 249336 - 251315 + | cytochrome c-type biogenesis protein CcmF Shewmr4_0235 251327 - 251881 + | periplasmic protein thiol--disulphide oxidoreductase DsbE Shewmr4_0236 251878 - 252357 + | cytochrome C biogenesis protein TERM 299 252864 - 252830 - g 71 -6.5 -4.2558 | gap 1, opp_overlap 252838, overlap 252831 252841 TATTCTCGATCAAAA CGGCCAATTGATCGCA TTTG TGCGATC-ATTTGTCG ACTGGGATGACGCAA TERM 300 252838 - 252857 + G 82 -10.8 -3.89524 | opp_overlap 252830 252831 252841 ATCAAAACGGCCAAT TGATCGCA TTTG TGCGATCA TTTGTCGACTGGGAT Shewmr4_0237 252354 - 252935 + | redoxin domain-containing protein TERM 301 252975 - 252989 + F 100 -10 -5.79595 | opp_overlap 252975 CGCCGTTGTAGAAAA GATCGC CAT GCGATC TTTTTTCTTTTAAAA TERM 302 252989 - 252975 - f 93 -10 -4.36914 | opp_overlap 252975 CGCCGTTGTAGAAAA GATCGC CAT GCGATC TTTTTTCTTTTAAAA TERM 303 253177 - 253163 - f 73 -8.6 -3.63805 | ACGCGACACGGGAAA TGCGTA GAA TACGCA GCCCTGACCCGCTGA TERM 304 253304 - 253282 - f 70 -7.1 -3.76952 | gap 1 TTGAGTTAATCGAAA TTACTCTGCC GTTT GGC-GAGTAA TCAAAATTTAAATCA TERM 305 255209 - 255169 - f 76 -2.7 -5.27779 | opp_overlap 255176 255181 255183 255188, overlap 255183 GTTAATACGAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 306 255789 - 255777 - f 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 307 256587 - 256571 - f 85 -9.4 -4.08546 | overlap 256584 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 308 257041 - 257069 + F 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 309 258255 - 258243 - f 72 -6.3 -4.2586 | TTAGACGAATACAAA CACTT AAG AAGTG GCACTCAATACAGCT TERM 310 258655 - 258690 + F 100 -15.6 -2.77962 | opp_overlap 258662, overlap 258662 CTCCGCCAACATTAA GAGATAAGCCTCTGCA GCAA TGCAGAGGCTTTTTTC GTTTCACCTGTACCA TERM 311 258683 - 258662 - f 100 -14.5 -3.72396 | opp_overlap 258655 258662 AACATTAAGAGATAA GCCTCTGCA GCAA TGCAGAGGC TTTTTTCGTTTCACC TERM 312 258662 - 258683 + F 100 -14.5 -5.37593 | opp_overlap 258662, overlap 258655 AACATTAAGAGATAA GCCTCTGCA GCAA TGCAGAGGC TTTTTTCGTTTCACC Shewmr4_0238 258855 - 259367 + | hypothetical protein TERM 313 259375 - 259404 + T 84 -10.7 -3.73775 | opp_overlap 259379, overlap 259376 AGTCGTAATGCCCAT AGCACAGCGGAGC ATTA GCTTTGCTGTGCG TTTAATGCGGCTGAG TERM 314 259376 - 259403 + T 95 -14.2 -2.84051 | opp_overlap 259379, overlap 259375 GTCGTAATGCCCATA GCACAGCGGAGC ATTA GCTTTGCTGTGC GTTTAATGCGGCTGA Shewmr4_0239 260722 - 259406 - | periplasmic sensor signal transduction histidine kinase Shewmr4_0240 261387 - 260725 - | two component transcriptional regulator Shewmr4_0241 261653 - 261387 - | peptidase Shewmr4_0242 262209 - 261646 - | diheme cytochrome c Shewmr4_0243 262697 - 262257 - | cytochrome c-type protein Shp Shewmr4_0244 263327 - 262731 - | cytochrome B561 TERM 315 262757 - 262767 + g 70 -4.6 -4.70659 | overlap 262755 CATCTTGTTGGATCA GCGG GCG CTGC TTTTTACCTGTCAGC Shewmr4_0245 263535 - 263957 + | hypothetical protein Shewmr4_0246 263986 - 264474 + | hypothetical protein Shewmr4_0247 265388 - 264471 - | LysR family transcriptional regulator Shewmr4_0248 265526 - 266287 + | short-chain dehydrogenase/reductase SDR TERM 316 266328 - 266308 - T 100 -15.5 -4.96501 | opp_overlap 266308 266312 266327, overlap 266312 CGCGATAAAAATAAA GAAAGGGCC AGT GGCCCTTTC TTGTTATCAAGGTAA TERM 317 266308 - 266328 + T 100 -15.5 -3.79906 | opp_overlap 266308 266312, overlap 266312 266327 CGCGATAAAAATAAA GAAAGGGCC AGT GGCCCTTTC TTGTTATCAAGGTAA TERM 318 266312 - 266324 + T 100 -10.5 -4.51812 | opp_overlap 266308 266312, overlap 266308 ATAAAAATAAAGAAA GGGCC AGT GGCCC TTTCTTGTTATCAAG TERM 319 266324 - 266312 - T 100 -10.5 -4.96845 | opp_overlap 266312 266308, overlap 266308 ATAAAAATAAAGAAA GGGCC AGT GGCCC TTTCTTGTTATCAAG Shewmr4_0249 267876 - 266356 - | aldehyde dehydrogenase TERM 320 266389 - 266407 + g 71 -6 -4.33105 | opp_overlap 266391 ATTGATATCGTAACT CACCAATA GGT TTTTGGTG TTTTGATAGTGATTG TERM 321 267639 - 267653 + g 71 -5.6 -4.56775 | overlap 267640 GCAGTAAATTCGCAC GCTCGG TGA CCGAGG TTTTTCCCCAAGCGT TERM 322 268216 - 268196 - H 100 -13.3 -3.05596 | CATTTTGTCATCCAA CGACACACC ATG GGTGTGCCG AAATGGAACAGCGCT Shewmr4_0250 268246 - 270105 + | Fis family GAF modulated sigma54 specific transcriptional regulator TERM 323 270126 - 270160 + T 100 -22.4 -4.67353 | opp_overlap 270128 270131, overlap 270128 GTTGACTGTTGATGA TATAAGCCCCGCTAAC GGA GTTAGCGGGGCTTATG TTTTTAGGTCGGTAA TERM 324 270128 - 270158 + T 100 -22.8 -3.95214 | opp_overlap 270128 270131, overlap 270126 TGACTGTTGATGATA TAAGCCCCGCTAAC GGA GTTAGCGGGGCTTA TGTTTTTAGGTCGGT TERM 325 270158 - 270128 - T 100 -22.8 -2.78816 | opp_overlap 270128 270126, overlap 270131 TGACTGTTGATGATA TAAGCCCCGCTAAC GGA GTTAGCGGGGCTTA TGTTTTTAGGTCGGT TERM 326 270155 - 270131 - T 100 -20.1 -3.54475 | opp_overlap 270128 270126, overlap 270128 CTGTTGATGATATAA GCCCCGCTAAC GGA GTTAGCGGGGC TTATGTTTTTAGGTC Shewmr4_0251 271513 - 270164 - | periplasmic sensor signal transduction histidine kinase Shewmr4_0252 272214 - 271528 - | two component transcriptional regulator TERM 327 271663 - 271683 + g 76 -8.3 -4.24413 | overlap 271656 271660 CATGAGTTTTTTGCC GAGCACAAT TTC ATTGAGCTC TTCTTTATTCATCAG Shewmr4_0253 272561 - 273052 + | protein of unknown function, Spy-related TERM 328 273131 - 273175 + G 91 -13 -4.02817 | gap 1 CCCAATACGATTTTT GGGTCAAACTGGCTAGTCGCG CTTC CGTGGCTA-CCGCTTTGACCC TTATTATTATCAAGC Shewmr4_0254 273103 - 273996 + | cation diffusion facilitator family transporter Shewmr4_0255 274042 - 274452 + | hypothetical protein TERM 329 274830 - 274845 + G 85 -4 -5.40072 | ACTTCAACGAGTGGT TTGGTT TAGA AGCCAA TTTTTTTGCAACGGC Shewmr4_0256 274640 - 275197 + | OmpA domain-containing protein TERM 330 275218 - 275253 + T 100 -16.6 -3.7791 | opp_overlap 275218 275221 275228, overlap 275221 275228 TATACCAAGTCTAAA TAATAAAAAAGGGATA TGAA TATCCCTTTTTTATTA TTTACTGGATGATTA TERM 331 275253 - 275218 - T 100 -16.6 -3.6869 | opp_overlap 275218 275221 275228, overlap 275221 275228 TATACCAAGTCTAAA TAATAAAAAAGGGATA TGAA TATCCCTTTTTTATTA TTTACTGGATGATTA TERM 332 275221 - 275250 + T 100 -13.9 -4.015 | opp_overlap 275218 275221 275228, overlap 275218 275228 ACCAAGTCTAAATAA TAAAAAAGGGATA TGAA TATCCCTTTTTTA TTATTTACTGGATGA TERM 333 275250 - 275221 - T 100 -13.9 -3.97019 | opp_overlap 275221 275218 275228, overlap 275218 275228 ACCAAGTCTAAATAA TAAAAAAGGGATA TGAA TATCCCTTTTTTA TTATTTACTGGATGA TERM 334 275228 - 275243 + T 100 -7.6 -5.72254 | opp_overlap 275221 275218 275228, overlap 275221 275218 CTAAATAATAAAAAA GGGATA TGAA TATCCC TTTTTTATTATTTAC TERM 335 275243 - 275228 - T 100 -7.6 -5.72254 | opp_overlap 275228 275221 275218, overlap 275221 275218 CTAAATAATAAAAAA GGGATA TGAA TATCCC TTTTTTATTATTTAC Shewmr4_0257 276681 - 275266 - | nitrogen metabolism transcriptional regulator, NtrC, Fis family TERM 336 275537 - 275549 + g 74 -7.7 -4.1822 | opp_overlap 275537 AGCTCTGGGGGTAAA TCCTG GGG CAGGA TTTCTTGCCCTGAGG TERM 337 276274 - 276302 + g 77 -9.5 -3.79668 | opp_overlap 276298, overlap 276275 276297 TTCGGGCGTTTTGAC TTGCGTCTCCTGC GGG GCAGGAGACGGGC TTTGCTCGGTTGCAT TERM 338 276275 - 276301 + g 78 -13 -2.87319 | opp_overlap 276298, overlap 276274 276297 TCGGGCGTTTTGACT TGCGTCTCCTGC GGG GCAGGAGACGGG CTTTGCTCGGTTGCA Shewmr4_0258 277765 - 276719 - | signal transduction histidine kinase, nitrogen specific, NtrB TERM 339 277125 - 277150 + g 72 -8.4 -3.92143 | opp_overlap 277123 277125 CGCTTTAATTGAATA TTGGTGGGAA GCGCCA TTTCCACCAA TTTATAGACCTTTTG Shewmr4_0259 278420 - 277887 - | hypothetical protein TERM 340 278678 - 278654 - R 100 -14.4 -4.07568 | opp_overlap 278651 TCTTTTGGGGGAAAA TCAACGCACC GTTAT GGTGCGTTGA CGACTTGTACTACGA Shewmr4_0260 279851 - 278694 - | iron-containing alcohol dehydrogenase Shewmr4_0261 280592 - 279996 - | TetR family transcriptional regulator TERM 341 280696 - 280670 - R 100 -11.7 -4.02253 | CTAACAATCCATAAA GGGATGCCTAA GTTAG TTAAGCATCCC CTACAAGCGTGTTAC Shewmr4_0262 281019 - 280708 - | hypothetical protein TERM 342 281793 - 281806 + r 76 -8.1 -4.15044 | ACGCGCCATCGAATG GGCAG GCGG CTGCC TTTATTGGGCAAGGG TERM 343 283208 - 283182 - R 70 -7.9 -3.73042 | opp_overlap 283201, overlap 283180 283183 283199 CGGCGGAGGAAAATA GCGCGGCCATT AGCCA AGTGGCCGCGA GCACCCGCAGCCTGT TERM 344 283207 - 283183 - R 81 -11.4 -2.83504 | opp_overlap 283201, overlap 283180 283182 283199 GGCGGAGGAAAATAG CGCGGCCATT AGCCA AGTGGCCGCG AGCACCCGCAGCCTG TERM 345 283362 - 283387 + r 100 -10.5 -5.63517 | GCCGTTTGTTATGCA TCCGCCAGA AGGGATTA TCTGGCGGA TTTTTTCTTTAGGGC Shewmr4_0264 285521 - 283422 - | hypothetical protein TERM 346 284908 - 284920 + g 93 -4.1 -5.75342 | TTGTCTTGCTCTTTT TTACC TAA GGTGA TTTTTTTTCCCGCCA TERM 347 285627 - 285640 + H 82 -3.1 -5.42259 | ATCAACAAAATGTGG CAGTT ATTG AGCTG TTTTTTTCAAGCTAA TERM 348 286018 - 285998 - g 100 -3.9 -5.86061 | GCGGAGCAAAAAAAA CTGACGC AGTGAAA GCGACAG GCGCAATTTCAAGCA Shewmr4_0265 285868 - 286257 + | hypothetical protein Shewmr4_0266 286463 - 286266 - | hypothetical protein Shewmr4_0267 286831 - 287670 + | ribokinase-like domain-containing protein TERM 349 287813 - 287835 + F 100 -13.5 -5.47218 | GTTGGTTCGCATGTT TGCCCCGTT TCCCC AACGGGGCA TTTTTTTAGCTCGAA TERM 350 288453 - 288440 - g 71 -5.3 -4.52345 | overlap 288442 288443 ACATTACGAAATAAA TATCG ATGC CGATA CCGCGGATCGGACCA Shewmr4_0268 287979 - 289436 + | diguanylate cyclase Shewmr4_0269 289540 - 290235 + | MOSC domain-containing protein Shewmr4_0270 290272 - 290628 + | hypothetical protein TERM 351 290655 - 290681 + T 100 -15.2 -4.1235 | opp_overlap 290655 GCGATTCAATAAAAA CGCCTTAGGGAG AGA CTCGCTAAGGCG TTGTTGTTTGGATTC TERM 352 290681 - 290655 - T 100 -15.2 -5.10461 | opp_overlap 290655 GCGATTCAATAAAAA CGCCTTAGGGAG AGA CTCGCTAAGGCG TTGTTGTTTGGATTC Shewmr4_0271 292627 - 290711 - | methyl-accepting chemotaxis sensory transducer TERM 353 292893 - 292923 + r 100 -17 -3.78067 | opp_overlap 292895, overlap 292895 GCGTGAAGGCAAGCA AAGATAAGGCGCTC AGT GAGCGCCTTATCTA TTTAGATTACATATT TERM 354 292895 - 292921 + r 100 -19.6 -3.46783 | opp_overlap 292895, overlap 292893 GTGAAGGCAAGCAAA GATAAGGCGCTC AGT GAGCGCCTTATC TATTTAGATTACATA TERM 355 292921 - 292895 - R 100 -19.6 -3.95986 | opp_overlap 292895 292893 GTGAAGGCAAGCAAA GATAAGGCGCTC AGT GAGCGCCTTATC TATTTAGATTACATA Shewmr4_0272 294579 - 292930 - | electron-transferring-flavoprotein dehydrogenase TERM 356 294695 - 294715 + H 89 -12.7 -2.78018 | opp_overlap 294702 294704, overlap 294692 ACCGCAGGGCACAGG GGCTAAACA GGC TGTTTAGCC TAATTAATGACAAAT moaA 294920 - 295933 + | molybdenum cofactor biosynthesis protein A moaC 296046 - 296525 + | molybdenum cofactor biosynthesis protein C Shewmr4_0275 296545 - 296796 + | molybdopterin synthase subunit MoaD Shewmr4_0276 296798 - 297265 + | molybdopterin synthase subunit MoaE TERM 357 297493 - 297469 - g 73 -5 -4.61231 | gap 1 TGATATTGTTAAAAA CTTCAGCGCCG AAAC CGG-GCTTAAG GTGCGAGTCTCCTAC Shewmr4_0277 297308 - 298111 + | molybdenum ABC transporter, periplasmic molybdate-binding protein Shewmr4_0278 298120 - 298800 + | molybdate ABC transporter, inner membrane subunit Shewmr4_0279 298781 - 299884 + | ABC transporter related TERM 358 300332 - 300315 - f 79 -8.5 -4.16842 | overlap 300329 CCGAGCCTGAACAAA GTGGATT GAGC AATCCAC AGGGGTGATGAATTA TERM 359 300401 - 300378 - f 86 -6.7 -4.92363 | AAACAGGGATAAAAA CGATGGGGT CTTGGC ACGCCATCG ACATCTAACTGATTG Shewmr4_0280 300458 - 300979 + | hypothetical protein Shewmr4_0281 301028 - 301705 + | two component transcriptional regulator TERM 360 302012 - 302025 + G 76 -8.1 -4.18018 | opp_overlap 302011 302012 CATGCTGCCGCAAAC TCGGG ATTT CCCGA TTTTAACTGGCGGCC Shewmr4_0282 301776 - 303011 + | periplasmic sensor signal transduction histidine kinase Shewmr4_0283 303044 - 303730 + | pseudouridine synthase Rlu family protein Shewmr4_0284 304902 - 303727 - | diguanylate cyclase TERM 361 304323 - 304312 - G 70 -4.4 -4.61147 | GAAGACGACATAAAA CCAA AGCA TTGG TGTCGCCTCCTCTCG TERM 362 304656 - 304644 - G 87 -7.7 -4.98531 | overlap 304648 GCTCTAAACGAAAAA GGTAC TGG GTACC CCAACGTAACATAAT Shewmr4_0285 305092 - 305259 + | hypothetical protein TERM 363 305309 - 305264 - T 100 -14.3 -3.11687 | opp_overlap 305278, overlap 305253 305278 CGAAGGATTAGCGAA TCCTCAATAAAAAAGCGCAAC CTAG GTTGCGCTTTTTTATGCAGAA AATCGGGCAGGTTAA TERM 364 305278 - 305295 + T 100 -11.3 -5.24129 | opp_overlap 305264 305278 ATCCTCAATAAAAAA GCGCAAC CTAG GTTGCGC TTTTTTATGCAGAAA TERM 365 305295 - 305278 - T 100 -11.3 -5.45652 | opp_overlap 305278, overlap 305264 ATCCTCAATAAAAAA GCGCAAC CTAG GTTGCGC TTTTTTATGCAGAAA Shewmr4_0286 307496 - 305325 - | TonB-dependent receptor Shewmr4_0287 307803 - 307994 + | hypothetical protein Shewmr4_0288 308519 - 308007 - | peptidase M23B Shewmr4_0289 309119 - 308541 - | hypothetical protein Shewmr4_0290 309847 - 309194 - | CHAP domain-containing protein TERM 366 310022 - 309990 - R 100 -16.3 -3.14881 | TAAGGTGGGGAGGAA CCCTAGCGGCGCACT GAT AAAGCGCCGCTAAGG AAATACCTCTATGAC Shewmr4_0291 311107 - 310037 - | hypothetical protein TERM 367 311194 - 311172 - H 100 -12.2 -4.44974 | opp_overlap 311177 GTAAACTTGATAAAA GTAAACTACA CAG TGTAGTTTAC TCAAGGCTGTGCAAA Shewmr4_0292 311261 - 311872 + | TetR family transcriptional regulator TERM 368 311888 - 311929 + T 100 -19.7 -4.4009 | opp_overlap 311892 311895, overlap 311890 CTTTCACTTGTTTCA AGCATAAGGCCGATAACGT TTTC ACGTTATCGGCCTTATGTA TTTTATCGCCTCAAA TERM 369 311890 - 311927 + T 100 -24.5 -3.80877 | opp_overlap 311892 311895, overlap 311888 TTCACTTGTTTCAAG CATAAGGCCGATAACGT TTTC ACGTTATCGGCCTTATG TATTTTATCGCCTCA TERM 370 311925 - 311892 - T 100 -21.3 -2.71144 | opp_overlap 311890 311888, overlap 311895 CACTTGTTTCAAGCA TAAGGCCGATAACGT TTTC ACGTTATCGGCCTTA TGTATTTTATCGCCT TERM 371 311922 - 311895 - T 100 -18.6 -3.50853 | opp_overlap 311890 311888, overlap 311892 TTGTTTCAAGCATAA GGCCGATAACGT TTTC ACGTTATCGGCC TTATGTATTTTATCG Shewmr4_0293 313294 - 311951 - | anaerobic C4-dicarboxylate transporter TERM 372 312909 - 312923 + g 74 -2.1 -5.06414 | overlap 312899 GCCACCGCCATCGGG CGTTC TGGGC GAATG TTTTTCTTCAGGGCG TERM 373 313398 - 313383 - H 71 -9 -3.33969 | GAATGGATTTGAGAA CTTGCG CTGG CGCAAG GTGTAAATAAAAAGT Shewmr4_0294 313578 - 314756 + | hypothetical protein TERM 374 314943 - 314956 + G 72 -3.7 -4.77036 | CGATAACTTTACCGC GGCGC TGGC GAGCC TTTTTAATGGTCAGC Shewmr4_0295 314761 - 315885 + | aminotransferase, class V TERM 375 315922 - 315952 + T 71 -9.6 -2.92668 | opp_overlap 315921, overlap 315918 GGAACGGCTATGAAT GGGGTGCGCTAAGG CGA CCTAGTTGCACCCC TATGCTTAAATACTG Shewmr4_0296 316281 - 315958 - | hypothetical protein Shewmr4_0297 317713 - 316466 - | sodium:dicarboxylate symporter TERM 376 318223 - 318203 - R 80 -4.7 -5.19261 | overlap 318195 318219 AAAGTCAGCAAAAAA GATTGCAAC AAA GTCACAACC ACGGGTTCGCGCCTT TERM 377 318329 - 318360 + r 75 -2.4 -5.30575 | CATGATATACAGAAA TATAGAGAGTGC TAAATAAT GTGCTTTCTATA TTTTTTAACTTTTTA Shewmr4_0298 319472 - 318669 - | TetR family transcriptional regulator TERM 378 319714 - 319691 - H 100 -6.8 -5.63517 | TTCCCAAAGAAAAAA TATTCACGAG ATAA CTCACGAATA AAATTGTCACTGAAA Shewmr4_0299 319808 - 321328 + | flavocytochrome c Shewmr4_0300 321332 - 321703 + | tetraheme cytochrome c, putative TERM 379 321926 - 321895 - g 72 -3.8 -4.78107 | gap 1 GATTATGATGAAAAA TCGAAGGATAAAGGC GGC GACTTTAAC-TTCGA CATGGCCGCCATCAA TERM 380 322240 - 322188 - g 73 -2.8 -4.9218 | gap 2, overlap 322221 322222 322230 GACCTATGAGAAAAA CGGCTGGCACACGGATTTAGCGTTTT ATA AAAATGCCGAATACG-GC-CCAACCG AAAACAAGCGTTATT TERM 381 322234 - 322221 - g 72 -3.7 -4.83169 | overlap 322188 322222 322230 AGCGTTTTATAAAAA TGCCG AATA CGGCC CAACCGAAAACAAGC Shewmr4_0301 321742 - 322875 + | hypothetical protein TERM 382 322934 - 322950 + F 100 -8 -6.40073 | CTGCTCAACCTTTTG GCCCTA TTCGT TAGGGC TTTTTTTTTTACGTT Shewmr4_0302 322984 - 324066 + | hypothetical protein TERM 383 324895 - 324878 - g 73 -5.5 -4.6856 | TAAAGATGTTAAAAA TCTACGG GTGG CCGAAGA AGCCTTTGACCGCGT Shewmr4_0303 324237 - 324980 + | hypothetical protein TERM 384 325115 - 325132 + T 100 -8.4 -6.02919 | opp_overlap 325115 TTTTCTGAATAAAAA CGGTCC ACTTGG GGACCG TTTTTTTGTTTGTAA TERM 385 325132 - 325115 - T 100 -8.4 -5.06414 | opp_overlap 325115 TTTTCTGAATAAAAA CGGTCC ACTTGG GGACCG TTTTTTTGTTTGTAA Shewmr4_0304 327448 - 325211 - | TonB-dependent siderophore receptor TERM 386 327792 - 327815 + r 100 -13.8 -3.07233 | opp_overlap 327792 GATAGAAACAAAAAA GCCCCGACAG AAGA CCGTCGGGGC TGTTAGAGGTTGTGC TERM 387 327815 - 327792 - R 100 -16 -5.76237 | opp_overlap 327792 GATAGAAACAAAAAA GCCCCGACAG AAGA CCGTCGGGGC TGTTAGAGGTTGTGC glnA 329262 - 327853 - | glutamine synthetase TERM 388 328912 - 328929 + g 79 -5.5 -5.03314 | opp_overlap 328921 AGCGATACCGGTAGA GCGTAAG TATT CTTCCGC TTTTTTCGCGATAGA TERM 389 329427 - 329441 + H 88 -10 -4.23758 | AAACAATCTTGAGTT GCACCA TAT TGGTGC TTTTGCGTGTGGCAT Shewmr4_0306 330262 - 332073 + | GTP-binding protein TypA TERM 390 332112 - 332147 + T 100 -17 -4.08872 | opp_overlap 332117, overlap 332117 AGCCACACAGTGAAT AAAAAGCCCCGCTAAG GTAA CTTGGCGGGGCTTTTG TTTACTTATGTATTT TERM 391 332117 - 332142 + T 100 -16.9 -5.02357 | opp_overlap 332117, overlap 332112 CACAGTGAATAAAAA GCCCCGCTAAG GTAA CTTGGCGGGGC TTTTGTTTACTTATG TERM 392 332142 - 332117 - T 100 -14.7 -5.12068 | opp_overlap 332112 332117 CACAGTGAATAAAAA GCCCCGCTAAG GTAA CTTGGCGGGGC TTTTGTTTACTTATG Shewmr4_0307 333455 - 332448 - | AraC family transcriptional regulator Shewmr4_0308 333593 - 334354 + | short-chain dehydrogenase/reductase SDR Shewmr4_0309 334402 - 334908 + | hypothetical protein TERM 393 335724 - 335708 - g 70 -8.7 -3.53444 | CGAGCTCCCGCCAAA GCGACCA TAG TGGTCAC GGGCATCCACACCGC Shewmr4_0310 334919 - 335995 + | alcohol dehydrogenase TERM 394 336022 - 336042 + F 100 -9 -5.45652 | gap 1, opp_overlap 336022 TGTCCGTCCAGTTAA GCCGC-CTG TTAG CAGTGCGGC TTTTTTATTACAGCT TERM 395 336399 - 336379 - g 82 -11.1 -3.75332 | AGCTCCCAAGGTAAA TGCCCCGTG ATG CATGGGGCA AATTCAGCGGTCGCC TERM 396 337278 - 337249 - g 87 -4.2 -5.4505 | TGGCTCAACAAAAAA GGCCCAGGCATT GGCGCA AATGCCGTGACC AGTGGCCTCGAAGGT TERM 397 337383 - 337373 - g 100 -8.2 -5.53288 | overlap 337374 GGGAATTGAAAAAAA GCCC AGC GGGC GCCTCGCAGTGGGAA TERM 398 337941 - 337927 - g 100 -7.8 -5.27477 | opp_overlap 337927, overlap 337929 337931 AGCCTAAGCAAAAAA GTCAGC ATC GCCGAC TTAATCGTGTTGGGC Shewmr4_0311 336349 - 338535 + | catalase/peroxidase HPI TERM 399 338557 - 338600 + T 100 -14.3 -3.36878 | gap 2, opp_overlap 338568, overlap 338559 338560 338568 GCGCGTAAGCTTATC GT-GA-ATAAAAAGGTGCAGC TTGG GCTGCACCTTTTTATGTCTAC TTATCAATAAATCAG TERM 400 338559 - 338597 + T 100 -17.1 -2.84919 | gap 1, opp_overlap 338568, overlap 338557 338560 338568 GCGTAAGCTTATCGT GA-ATAAAAAGGTGCAGC TTGG GCTGCACCTTTTTATGTC TACTTATCAATAAAT TERM 401 338560 - 338595 + T 100 -16.4 -2.97245 | opp_overlap 338568, overlap 338559 338557 338568 CGTAAGCTTATCGTG AATAAAAAGGTGCAGC TTGG GCTGCACCTTTTTATG TCTACTTATCAATAA TERM 402 338568 - 338587 + T 100 -13.6 -5.06505 | opp_overlap 338568, overlap 338560 338559 338557 TATCGTGAATAAAAA GGTGCAGC TTGG GCTGCACC TTTTTATGTCTACTT TERM 403 338587 - 338568 - T 100 -13.6 -5.07486 | opp_overlap 338568 338560 338559 338557 TATCGTGAATAAAAA GGTGCAGC TTGG GCTGCACC TTTTTATGTCTACTT Shewmr4_0312 339867 - 338620 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewmr4_0313 341776 - 340043 - | diguanylate cyclase TERM 404 340921 - 340901 - G 72 -3.9 -4.78237 | CACGCCATAACAAAA CTCGGCC ACTAACA GGGCGAG CACAAACACGAGAGC Shewmr4_0314 342673 - 342020 - | hypothetical protein TERM 405 342575 - 342586 + g 76 -5.8 -4.65895 | CATAATGTCGCGCTT GTGG TAGC CCAC TTTTTCCATGGCGCC Shewmr4_0315 342924 - 342703 - | hypothetical protein TERM 406 342830 - 342820 - G 74 -4.6 -4.77036 | TGTGATCACGAAAAA CAGC AAT GCCG CCATAATTCGTCCCT rbn 343006 - 344019 + | ribonuclease BN Shewmr4_0317 344065 - 345021 + | prolyl aminopeptidase Shewmr4_0318 345018 - 345620 + | hypothetical protein TERM 407 345778 - 345768 - g 72 -4 -4.76312 | overlap 345772 GAGAAGATGGAAAAA TTAG CCA CTAA GGTGATGAGTTATCG Shewmr4_0319 345636 - 346073 + | D-tyrosyl-tRNA deacylase Shewmr4_0320 346113 - 346550 + | thioesterase domain-containing protein Shewmr4_0321 346684 - 347280 + | azoreductase TERM 408 347318 - 347300 - T 100 -10.3 -5.66338 | opp_overlap 347300 AAAGATAATAAAAAA TGCCAGC GTAAT GCTGGCA TTTTTGTTTCTGCAG TERM 409 347300 - 347318 + T 100 -11 -5.38054 | opp_overlap 347300 AAAGATAATAAAAAA TGCCAGCG TAA TGCTGGCA TTTTTGTTTCTGCAG Shewmr4_0322 347523 - 347341 - | hypothetical protein Shewmr4_0323 347866 - 347543 - | rhodanese domain-containing protein Shewmr4_0324 348537 - 347962 - | XRE family transcriptional regulator Shewmr4_0325 348672 - 349832 + | benzoate transporter Shewmr4_0326 351260 - 349869 - | methyl-accepting chemotaxis sensory transducer TERM 410 351085 - 351071 - G 70 -10 -3.22924 | opp_overlap 351080, overlap 351069 GGTAAATCAGGAAGA TCGCCA TAG TGGCGA AGATATGAAAGTGCA Shewmr4_0327 351978 - 351382 - | electron transport protein SCO1/SenC Shewmr4_0328 352671 - 352216 - | GCN5-related N-acetyltransferase Shewmr4_0329 353388 - 352957 - | hypothetical protein Shewmr4_0330 353913 - 353443 - | hypothetical protein Shewmr4_0331 354872 - 353988 - | hypothetical protein TERM 411 354231 - 354248 + g 79 -7.1 -4.73682 | TCCGTTTTTCTCCAT TTCCATT CTTG AATGGAA TTTTATATTGTCAGA TERM 412 354352 - 354364 + g 73 -2.7 -5.03715 | CTCGATATGAATGTT CTAAT CTG GTTAG TTTTTTCGCAATAAT TERM 413 354673 - 354662 - G 70 -4.4 -4.65838 | opp_overlap 354662 TATATATTTCAAAAA CTTC TTTT GAAG TTAACTTTTCTCCAT Shewmr4_0332 355600 - 355301 - | plasmid stabilization system protein Shewmr4_0333 355851 - 355609 - | prevent-host-death family protein TERM 414 356011 - 355976 - R 100 -12 -3.79419 | opp_overlap 355979 355985, overlap 355978 355979 355985 CTTGCCTACAAAAGA GAGCAAAAAGCCGAGA TGAT TCTCGGCTTTTTGTTA ATGCTTTTACTCATC TERM 415 356009 - 355978 - R 100 -14.6 -3.48115 | opp_overlap 355979 355985, overlap 355976 355979 355985 TGCCTACAAAAGAGA GCAAAAAGCCGAGA TGAT TCTCGGCTTTTTGT TAATGCTTTTACTCA TERM 416 356008 - 355979 - R 100 -18.1 -2.68387 | opp_overlap 355979 355985, overlap 355978 355976 355985 GCCTACAAAAGAGAG CAAAAAGCCGAGA TGAT TCTCGGCTTTTTG TTAATGCTTTTACTC TERM 417 355979 - 356008 + r 100 -18.1 -3.38604 | opp_overlap 355979 355978 355976 355985, overlap 355985 GCCTACAAAAGAGAG CAAAAAGCCGAGA TGAT TCTCGGCTTTTTG TTAATGCTTTTACTC TERM 418 355985 - 356002 + r 100 -11.3 -5.16071 | opp_overlap 355979 355978 355976 355985, overlap 355979 AAAAGAGAGCAAAAA GCCGAGA TGAT TCTCGGC TTTTTGTTAATGCTT TERM 419 356002 - 355985 - R 100 -11.3 -4.91573 | opp_overlap 355985 355979, overlap 355979 355978 355976 AAAAGAGAGCAAAAA GCCGAGA TGAT TCTCGGC TTTTTGTTAATGCTT Shewmr4_0334 356779 - 356036 - | hypothetical protein Shewmr4_0335 358043 - 356790 - | 3-oxoacyl-(acyl carrier protein) synthase II TERM 420 357598 - 357578 - G 70 -2.4 -4.99568 | TAAGACCAAAGAAAA CCCCCACG TTTAC CGCAGTGG TGTGTGCCATCATGC fabG 358769 - 358044 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 421 358844 - 358858 + r 70 -7.8 -3.60792 | CCTTTTGTAGTACGA CTGACG TTG CGTCGG TTTAAAGCTTGGCGC Shewmr4_0337 359434 - 358895 - | thioester dehydrase family protein Shewmr4_0338 360663 - 359440 - | 3-oxoacyl-(acyl carrier protein) synthase I Shewmr4_0339 361500 - 360760 - | hypothetical protein Shewmr4_0340 362812 - 361505 - | monooxygenase, FAD-binding TERM 422 361645 - 361665 + g 71 -6.9 -4.19506 | opp_overlap 361634 361645, overlap 361650 CATAGCCCGCCAAAA TCGAGCAGA TCA TCTGTTTGA TTTTAGGATTCGGAT TERM 423 361709 - 361693 - G 73 -2.9 -5.0133 | GATTTTCGTAAAAAA TCACATC TTG GAAGCGA CCATCGTACCAAGCC TERM 424 362538 - 362558 + g 80 -4.6 -5.09762 | overlap 362540 GTGGTATACACCCCA TCGCGTCG GAAGG CGGCGCCA TTTTTATATTGGAAT Shewmr4_0341 365332 - 362813 - | hypothetical protein Shewmr4_0342 366160 - 365342 - | hypothetical protein Shewmr4_0343 366591 - 366157 - | thioesterase superfamily protein Shewmr4_0344 368153 - 366588 - | histidine ammonia-lyase Shewmr4_0345 369982 - 368150 - | glycosyl transferase family protein TERM 425 368281 - 368313 + g 78 -12.8 -2.96274 | opp_overlap 368270 368271 368280 368281, overlap 368274 368276 TAAACCACTGCAAAG GCTCACGCCTTG CGTAGTGTT CGAGGCGTGAGC TGTAGTTGTGCACCG Shewmr4_0346 370353 - 369979 - | thioester dehydrase family protein Shewmr4_0347 371710 - 370346 - | hypothetical protein Shewmr4_0348 372255 - 371707 - | hypothetical protein Shewmr4_0349 372503 - 372255 - | acyl carrier protein Shewmr4_0350 372767 - 372513 - | acyl carrier protein, putative Shewmr4_0351 373602 - 372754 - | phospholipid/glycerol acyltransferase TERM 426 372910 - 372930 + g 72 -8.3 -3.93401 | overlap 372898 CATTCCCATGGTTTG CCTTGGGAT CTC ATACCAAGG TTGTTCCTTTGTCAA Shewmr4_0352 374332 - 373595 - | hypothetical protein TERM 427 374668 - 374654 - R 100 -8.5 -5.08824 | opp_overlap 374654 TTTGCATGTAAAAAA GGCGC ACGAG GCGCC TTTTTAGAGGAGATA TERM 428 374654 - 374668 + r 87 -8.5 -4.57073 | opp_overlap 374654 TTTGCATGTAAAAAA GGCGC ACGAG GCGCC TTTTTAGAGGAGATA Shewmr4_0353 375585 - 374689 - | hypothetical protein Shewmr4_0354 377854 - 375764 - | ATP-dependent DNA helicase RecG TERM 429 375885 - 375903 + g 79 -8.8 -4.13767 | GGGATAAGCGCCTGA TCGCGGAC AAG GTCGGCGA TTTTCAGCTCGGCCA TERM 430 378283 - 378301 + G 73 -3.1 -5.00884 | CACGTCGCCTGCATG GGCCA AATTAGAGG TGGCC TTTTTTAACCCAGGT Shewmr4_0355 378221 - 379246 + | periplasmic binding protein/LacI transcriptional regulator Shewmr4_0356 379266 - 381092 + | diguanylate cyclase Shewmr4_0357 381208 - 381621 + | hypothetical protein Shewmr4_0358 382423 - 381584 - | amino acid ABC transporter periplasmic protein Shewmr4_0359 382594 - 383910 + | hypothetical protein TERM 431 383958 - 383920 - T 100 -14.8 -3.1886 | opp_overlap 383932, overlap 383925 383932 ACCTAATCTTATCAA CATCATAAAAAACGGGAC TCA GTCCCGTTTTTTATATCG CTACTAAAATTTAGA TERM 432 383953 - 383925 - T 100 -17.7 -2.77701 | opp_overlap 383932, overlap 383920 383932 ATCTTATCAACATCA TAAAAAACGGGAC TCA GTCCCGTTTTTTA TATCGCTACTAAAAT TERM 433 383946 - 383932 - T 100 -11.4 -5.36965 | opp_overlap 383932, overlap 383925 383920 CAACATCATAAAAAA CGGGAC TCA GTCCCG TTTTTTATATCGCTA TERM 434 383932 - 383946 + T 100 -11.4 -5.38047 | opp_overlap 383925 383920 383932 CAACATCATAAAAAA CGGGAC TCA GTCCCG TTTTTTATATCGCTA Shewmr4_0360 384841 - 383969 - | DNA-binding transcriptional regulator IlvY TERM 435 384911 - 384887 - H 72 -6.5 -4.27316 | overlap 384890 TGTTGTAACCGAAAA TGACATTGCAT AAA ACGCAATGTGA GGTTTCGAATATATC Shewmr4_0361 385038 - 386516 + | ketol-acid reductoisomerase TERM 436 386555 - 386525 - f 79 -11.1 -2.95091 | overlap 386521 AGCTTAATTGATAGA GGCCGAGCCCC TAAGGATGT GGGGCTCGGCG TGACAAATTTATTCC TERM 437 387016 - 386968 - f 74 -6.6 -4.28049 | gap 1, opp_overlap 386972 387008, overlap 386977 386980 CCTAAAAGGTTAAAA GTTTCGAAAGAACCCCCCGCTCC GAAA GGACCGGGGGGTTCTT-CGTTTT CAGGCCCTAGGTTTT TERM 438 386972 - 387012 + F 100 -20.6 -4.08767 | gap 1, opp_overlap 386968 386977 386980, overlap 387008 AAAGGTTAAAAGTTT CGAAAGAACCCCCCGCTCC GAAA GGACCGGGGGGTTCTT-CG TTTTCAGGCCCTAGG TERM 439 387008 - 386977 - f 100 -20.2 -3.60818 | opp_overlap 386972, overlap 386968 386980 TTAAAAGTTTCGAAA GAACCCCCCGCTCC GAAA GGACCGGGGGGTTC TTCGTTTTCAGGCCC TERM 440 387005 - 386980 - f 100 -16.1 -3.92832 | opp_overlap 386972, overlap 386977 386968 AAAGTTTCGAAAGAA CCCCCCGCTCC GAAA GGACCGGGGGG TTCTTCGTTTTCAGG Shewmr4_0362 387107 - 388780 + | acetolactate synthase 2 catalytic subunit ilvM 388777 - 389037 + | acetolactate synthase 2 regulatory subunit TERM 441 389491 - 389539 + G 77 -8.9 -4.03234 | gap 1, opp_overlap 389490 389491 TAACTGCGACAAAAT CACCCCCGGCATGTTGATGGCG GCGCTG CGCC-TCAATATCCCCGTGGTG TTTGTGTCGGGCGGG TERM 442 389893 - 389864 - g 82 -7.1 -4.77036 | gap 1 CGTTACTACGAAAAA GATGATGCCTCGGC ACT GCCGCG-CAACATC GCCAGCTTTAAAGCC TERM 443 389945 - 389917 - g 70 -9.6 -3.30635 | gap 1, opp_overlap 389917 389934 TAAAGCCTTTGAGAA CG-CCATGGCGCT GGAT ATCGCCATGGGCG GTTCGTCTAATACTG Shewmr4_0364 389117 - 390976 + | dihydroxy-acid dehydratase TERM 444 391594 - 391582 - g 74 -7.7 -4.16016 | overlap 391583 CTATCGCCCAAGAAA TGCTG CAA CAGCA GCGCGACCTTGAAGT TERM 445 392124 - 392137 + G 70 -2.3 -4.92314 | opp_overlap 392110, overlap 392125 GTGCCCGAGCGTCCC GGCAG CTTC CTGCG TTTTTGTGAGTTGCT Shewmr4_0365 390978 - 392651 + | threonine dehydratase TERM 446 392707 - 392684 - f 70 -8 -3.62418 | opp_overlap 392687, overlap 392687 ACAACTTAGGCTAAA GGAGGGGCGC ACAG GCGCCCCTTT TTGTGGTAGTTTGGT TERM 447 392687 - 392704 + F 100 -14.1 -4.95806 | opp_overlap 392684 392687 ACTTAGGCTAAAGGA GGGGCGC ACAG GCGCCCC TTTTTGTGGTAGTTT TERM 448 392704 - 392687 - f 100 -14.1 -2.92792 | opp_overlap 392687, overlap 392684 ACTTAGGCTAAAGGA GGGGCGC ACAG GCGCCCC TTTTTGTGGTAGTTT Shewmr4_0366 392794 - 393927 + | alanine-glyoxylate aminotransferase Shewmr4_0367 393929 - 394222 + | hypothetical protein TERM 449 394258 - 394274 + F 100 -10.1 -5.24129 | opp_overlap 394258 TTGATCCTTTATAAA TCCCCGT AAT GCGGGGA TTTTTTATAAAGACA TERM 450 394274 - 394258 - f 81 -9.4 -3.86897 | opp_overlap 394258 TTGATCCTTTATAAA TCCCCG TAATG CGGGGA TTTTTTATAAAGACA Shewmr4_0368 394536 - 394772 + | hypothetical protein TERM 451 395031 - 395048 + T 73 -2.7 -5.1523 | TGTAATGATTGTTTA TGAAGAA ATAA TTCCTCA TTTTTATCTTATCCA TERM 452 395189 - 395163 - T 100 -16.7 -5.08601 | TCATCCCAACAAAAA CGGCATCTGCA TAAGT TGCAGATGCCG CCTGTCGCACTGAAT Shewmr4_0369 396046 - 395222 - | phosphatidylglycerophosphatase TERM 453 396096 - 396068 - R 100 -9.5 -5.7946 | opp_overlap 396067, overlap 396069 TTGCCAATAAAAAAA TCCCGACAGCAAA AAG TGCGCTGTCGGGG GTCTTCAAGGGTGGA TERM 454 396095 - 396069 - R 100 -13 -4.06592 | opp_overlap 396067, overlap 396068 TGCCAATAAAAAAAT CCCGACAGCAAA AAG TGCGCTGTCGGG GGTCTTCAAGGGTGG Shewmr4_0370 397594 - 396122 - | hypothetical protein TERM 455 397679 - 397703 + r 72 -9.3 -3.22476 | opp_overlap 397675 397679 397680, overlap 397680 GGGTATTAAAACAGA TTTGCCCGC TGGAATT GCGGGCAAG TTGCTGATCAATAGT TERM 456 397702 - 397680 - R 74 -10.6 -2.66321 | opp_overlap 397679 397680, overlap 397679 397675 GGTATTAAAACAGAT TTGCCCGC TGGAATT GCGGGCAA GTTGCTGATCAATAG TERM 457 397680 - 397702 + r 73 -10.6 -2.53164 | opp_overlap 397680 397679 397675, overlap 397679 GGTATTAAAACAGAT TTGCCCGC TGGAATT GCGGGCAA GTTGCTGATCAATAG Shewmr4_0371 398284 - 397757 - | hypothetical protein TERM 458 398233 - 398220 - G 78 -3.8 -5.17353 | ATATTCATCAAAAAA GGCA GCTTAG TGCC ATTGCCAGTTTTGCG Shewmr4_0372 398519 - 399685 + | hypothetical protein Shewmr4_0373 400047 - 399682 - | hypothetical protein Shewmr4_0374 400439 - 400107 - | hypothetical protein TERM 459 400511 - 400485 - R 100 -5.9 -5.93252 | gap 1 GTTAAAAACAAAAAA GCACAGCT-GCG CTAT CGCTAACTGTAC TCTTTCAAACATGCA Shewmr4_0375 400788 - 400534 - | hypothetical protein Shewmr4_0376 401004 - 403019 + | ATP-dependent DNA helicase Rep TERM 460 403046 - 403013 - T 100 -15.5 -4.61231 | opp_overlap 403016 403020 GGATATGTTTAAAAA GCAGTAATCACAAGA TTCA TCATGTGATTACTGC ATTCAGGCACAGACC TERM 461 403016 - 403043 + T 70 -10 -2.52464 | opp_overlap 403013, overlap 403020 TATGTTTAAAAAGCA GTAATCACAAGA TTCA TCATGTGATTAC TGCATTCAGGCACAG Shewmr4_0377 405679 - 403049 - | diguanylate cyclase/phosphodiesterase with GAF sensor TERM 462 403119 - 403089 - G 88 -3.8 -5.55769 | overlap 403091 403104 TCTGACAATAAAAAA GGTGAGGCTAAGGC ACC GCCTTGGCCAAAGC GATAACCTAATGCGT TERM 463 403441 - 403430 - G 86 -5.8 -5.14563 | overlap 403432 CTTTTCATTAAAAAA CAGC CATA GCTG TGGCAGCGCAAGCTT TERM 464 404403 - 404422 + g 80 -3.4 -5.24416 | opp_overlap 404393 404403, overlap 404397 404405 TTCAACTCGGCAAGA GCCGTGGT GCGT GCCGCGAC TTTTTCTTCTAATTC TERM 465 404444 - 404471 + g 70 -3.4 -4.87665 | gap 1, overlap 404448 TTCTAATTCTTCATA GCT-GCGGCGCAA AGA TTCTGCCGTTAGC TTTTTCTCGATGGCC TERM 466 405602 - 405617 + g 70 -2.5 -5.055 | ATGCGCCAAATATTT GAGGC GATTAA GTCTC TTTTTTAAGCGTTCA TERM 467 406413 - 406442 + r 90 -5.7 -5.4492 | gap 1, opp_overlap 406413 ACCAATTACATTGAA GCCTCAG-AATTCC TTA GGGATCACTGGGGC TTTTTTGTATCTGTC TERM 468 406574 - 406551 - R 100 -14 -3.90744 | opp_overlap 406555 TTCCCGCTCAAATAA TTAAGGCTCC CTAA GGAGCCTTAA TGCAAACATATTCGA TERM 469 406555 - 406570 + r 77 -10.4 -3.14683 | opp_overlap 406551 CGCTCAAATAATTAA GGCTCC CTAA GGAGCC TTAATGCAAACATAT Shewmr4_0378 408510 - 406591 - | diguanylate cyclase/phosphodiesterase Shewmr4_0379 409226 - 408519 - | hypothetical protein TERM 470 408916 - 408906 - G 71 -6.8 -4.18488 | ATTTACGCCAATAAA CTCC ATT GGAG TCGCCCAGTAGTTTG Shewmr4_0380 409853 - 409245 - | OmpA/MotB domain-containing protein TERM 471 409306 - 409339 + g 75 -8.7 -3.91897 | GTCGTCGTATCATCA CCAGTCACTTCCGCG ACTA CGCGGCGGTTACGGG TTTCTGCATCAGGCG Shewmr4_0381 411265 - 409850 - | TolC family type I secretion outer membrane protein Shewmr4_0382 412674 - 411292 - | HlyD family type I secretion membrane fusion protein TERM 472 411982 - 411994 + g 86 -9.1 -4.58663 | GAGTAATTCGACTTC GGGCA CGA TGCCC TTTTTGGCGAGTGGT Shewmr4_0383 414848 - 412671 - | ABC transporter related TERM 473 414704 - 414686 - G 74 -8.1 -4.08064 | overlap 414699 414700 AATCTGGTGTTAAAA CTGCCCC AGACA AGGGCAG ACCTGCCGCAAGTGA TERM 474 414773 - 414824 + g 76 -5.3 -4.84761 | opp_overlap 414773 414776 ACACTAAACAATCAA GTAGAG-GGTCGACTATTACCCGCT GTGA AGCGGA-AATAGTCCACTGCTCAAC TTTTTCTGAGGCTGT TERM 475 414893 - 414929 + r 86 -11.8 -3.02371 | gap 1, opp_overlap 414889 414891, overlap 414889 414890 ATTATCAGAAGTATG GGTCATGATGGCCTATA TTTC TATAGGCCA-CATGAAC TGATTGTTTAAGGAA Shewmr4_0384 431265 - 414937 - | putative outer membrane adhesin like protein TERM 476 417911 - 417926 + g 75 -10.4 -3.46602 | opp_overlap 417907, overlap 417924 TATTTATCATAGGCA GCAGCG CCAC CGCTGC TTATGGTATAAGCAA TERM 477 418117 - 418141 + g 78 -3.6 -5.18726 | GGCACCGCCTATTTG TAACACTCCA TTGAT TGTAGTGTTG TTTTTGTTGTCGCCA TERM 478 419119 - 419103 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 479 419413 - 419397 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 480 419707 - 419691 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 481 420001 - 419985 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 482 420295 - 420279 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 483 420589 - 420573 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 484 421471 - 421455 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 485 421765 - 421749 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 486 422059 - 422043 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 487 422353 - 422337 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 488 422647 - 422631 - G 79 -12.3 -3.25823 | CGGCGGGGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 489 422941 - 422925 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 490 423235 - 423219 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 491 423529 - 423513 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 492 424117 - 424101 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 493 424411 - 424395 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 494 424705 - 424689 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 495 424999 - 424983 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 496 425293 - 425277 - G 79 -12.3 -3.25823 | CGGCGGGGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 497 425587 - 425571 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 498 425881 - 425865 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 499 426175 - 426159 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 500 426469 - 426453 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 501 426763 - 426747 - G 79 -12.3 -3.25823 | CGGCGGTGACAGTAA CACTGGC GGT GCCAGTG AAGCCTGGGGTCGGC TERM 502 428550 - 428578 + g 77 -11.7 -3.17206 | overlap 428545 428554 TGTCTTGGGTGATGC TGGTGATGGCCAC GGT GTTGCCGTCGCCA TCTTCATCAATCTTG TERM 503 428554 - 428580 + g 81 -13 -3.22448 | overlap 428550 428545 TTGGGTGATGCTGGT GATGGCCACGGT GTT GCCGTCGCCATC TTCATCAATCTTGGT Shewmr4_0385 432737 - 431571 - | HemY domain-containing protein TERM 504 431738 - 431748 + g 74 -6.8 -4.30576 | opp_overlap 431738 TTTGTTGGTACAGTA GTGC TAA GCAC TTTTGGTAATCAGCA TERM 505 432327 - 432337 + g 91 -6.8 -5.17488 | overlap 432307 432308 GGCAAGGTATTGATC TCGC TCG GCGA TTTTATTTTGATGTT Shewmr4_0386 433963 - 432734 - | protein of unknown function DUF513, hemX Shewmr4_0387 434722 - 434024 - | uroporphyrinogen III synthase HEM4 hemC 435701 - 434769 - | porphobilinogen deaminase TERM 506 435731 - 435748 + H 74 -9.9 -3.16492 | overlap 435728 CGAGATCTTAGTTGC GCCAATG CTAA CATTGGC TATTCGTGAATGTAA cyaA 435904 - 438318 + | adenylate cyclase TERM 507 438319 - 438335 + T 78 -9.4 -3.63515 | AACGTGGAGTTTTAA GCGGGA ATAGC TCCCGC TTGTTAAAGCTGCAC Shewmr4_0390 438687 - 438358 - | frataxin family protein Shewmr4_0391 438992 - 440236 + | diaminopimelate decarboxylase dapF 440307 - 441134 + | diaminopimelate epimerase TERM 508 441356 - 441339 - g 79 -7.7 -4.4634 | AACTCGAAGAAGAAA TCACCAG TCTG CTGGCGA TGGCAGCGCGCAATG Shewmr4_0393 441131 - 441766 + | hypothetical protein Shewmr4_0394 441815 - 442714 + | tyrosine recombinase XerC Shewmr4_0395 442714 - 443436 + | HAD family hydrolase Shewmr4_0396 443582 - 444160 + | HupE/UreJ protein Shewmr4_0397 444668 - 444165 - | putative transcriptional regulator TERM 509 444719 - 444746 + r 100 -18.6 -3.35798 | opp_overlap 444719 444723, overlap 444723 AACACGCCAAAATAA CAAAGGCCAGCA GTTG TGCTGGCCTTTG TTGTGAATCAGCAGT TERM 510 444746 - 444719 - R 100 -18.6 -4.2142 | opp_overlap 444719 444723, overlap 444723 AACACGCCAAAATAA CAAAGGCCAGCA GTTG TGCTGGCCTTTG TTGTGAATCAGCAGT TERM 511 444723 - 444742 + r 100 -13.6 -4.33417 | opp_overlap 444719 444723, overlap 444719 CGCCAAAATAACAAA GGCCAGCA GTTG TGCTGGCC TTTGTTGTGAATCAG TERM 512 444742 - 444723 - R 100 -13.6 -4.67697 | opp_overlap 444723 444719, overlap 444719 CGCCAAAATAACAAA GGCCAGCA GTTG TGCTGGCC TTTGTTGTGAATCAG Shewmr4_0398 445513 - 444767 - | hemerythrin HHE cation binding domain-containing protein TERM 513 445726 - 445705 - R 100 -14.5 -5.09521 | opp_overlap 445705 CTAATAAAGCAAAAA GGCGAGTCA TTGC TGACTCGCC TTTTTAATACAACAG TERM 514 445705 - 445726 + r 100 -14.5 -4.72272 | opp_overlap 445705 CTAATAAAGCAAAAA GGCGAGTCA TTGC TGACTCGCC TTTTTAATACAACAG Shewmr4_0399 446062 - 445757 - | helix-turn-helix, Fis-type Shewmr4_0400 447047 - 446079 - | nifR3 family TIM-barrel protein TERM 515 447077 - 447091 + r 74 -4.2 -5.07486 | opp_overlap 447075, overlap 447064 447079 TAGCTCTTCAAAGGG GCGCTA TAG TAGCCC TTTTTATTGGCCGTG TERM 516 447214 - 447191 - R 90 -13.2 -2.55818 | gap 1, opp_overlap 447186 447192 447193 447197 AATAAGCCTAAGCCA GTGGTGGCGCA TGT TGCGCCACC-C TTTAGCGTTATTTGC TERM 517 447192 - 447214 + r 100 -13.4 -3.74238 | opp_overlap 447191, overlap 447186 447193 447197 ATAAGCCTAAGCCAG TGGTGGCGCA TGT TGCGCCACCC TTTAGCGTTATTTGC TERM 518 447193 - 447213 + r 100 -16.9 -2.8382 | opp_overlap 447191, overlap 447192 447186 447197 TAAGCCTAAGCCAGT GGTGGCGCA TGT TGCGCCACC CTTTAGCGTTATTTG prmA 448103 - 447222 - | ribosomal protein L11 methyltransferase TERM 519 448318 - 448335 + H 71 -4.1 -4.8048 | opp_overlap 448318 TGGTTGTACGCAAAA TCGAACC GCTC GTTTCGA TTTTTAATATAAAGC Shewmr4_0402 448546 - 449271 + | fumarate reductase cytochrome b-556 subunit TERM 520 449283 - 449323 + F 70 -2.7 -4.9138 | gap 2, overlap 449285 449315 TTGATTGAAATCCAA TTCTGCTGCGTTT--ATCC CTGAT GGATTTGGGCGCAGCAGGA TTTTGTTTCGCTGCT TERM 521 449370 - 449389 + F 71 -2.2 -5.19261 | gap 1 ATTAATTATTCGCCT CCT-AGTTG ATC TAACTCAGG TTTTTTGATGGATTT Shewmr4_0403 449478 - 450149 + | fumarate reductase respiratory complex, transmembrane subunit Shewmr4_0404 450211 - 452217 + | fumarate reductase flavoprotein subunit sdhB 452217 - 452948 + | fumarate reductase iron-sulfur subunit TERM 522 452968 - 453010 + T 100 -14.5 -3.02144 | gap 1, opp_overlap 452973 452975 452981, overlap 452975 452981 TCTTTAGCTGTTTGA TTCA-ACATAAAAAGCGCCT TCGT AGGCGCTTTTTATGTGTGGG TCTTAACAGGCATAA TERM 523 453004 - 452973 - T 100 -19 -3.05463 | opp_overlap 452968 452975 452981, overlap 452975 452981 AGCTGTTTGATTCAA CATAAAAAGCGCCT TCGT AGGCGCTTTTTATG TGTGGGTCTTAACAG TERM 524 453002 - 452975 - T 100 -15.8 -3.08679 | opp_overlap 452968 452975 452981, overlap 452973 452981 CTGTTTGATTCAACA TAAAAAGCGCCT TCGT AGGCGCTTTTTA TGTGTGGGTCTTAAC TERM 525 452975 - 453002 + T 100 -15.8 -2.9518 | opp_overlap 452975 452973 452981, overlap 452968 452981 CTGTTTGATTCAACA TAAAAAGCGCCT TCGT AGGCGCTTTTTA TGTGTGGGTCTTAAC TERM 526 452996 - 452981 - T 100 -10.4 -5.10767 | opp_overlap 452975 452968 452981, overlap 452975 452973 GATTCAACATAAAAA GCGCCT TCGT AGGCGC TTTTTATGTGTGGGT TERM 527 452981 - 452996 + T 100 -10.4 -5.04597 | opp_overlap 452981 452975 452973, overlap 452975 452968 GATTCAACATAAAAA GCGCCT TCGT AGGCGC TTTTTATGTGTGGGT Shewmr4_0406 453297 - 453013 - | antibiotic biosynthesis monooxygenase Shewmr4_0407 454316 - 453294 - | NADPH:quinone reductase Shewmr4_0408 454434 - 455351 + | LysR family transcriptional regulator TERM 528 455496 - 455510 + T 73 -8.5 -3.6502 | opp_overlap 455496 AAGCGCAATAAAAAA GCCGC ATTAA GCGGC TTTCCGTGGAAGATG TERM 529 455510 - 455496 - T 100 -8.5 -5.4756 | opp_overlap 455496 AAGCGCAATAAAAAA GCCGC ATTAA GCGGC TTTCCGTGGAAGATG rho 456800 - 455535 - | transcription termination factor Rho TERM 530 456441 - 456455 + g 71 -7.2 -4.07568 | opp_overlap 456441, overlap 456437 TTCGGGTTTATCGAA GTTAAC TTC GTTAAC TTTTAGCAGGGCAAA Shewmr4_0410 457338 - 457012 - | thioredoxin TERM 531 458253 - 458268 + G 76 -6.1 -4.61482 | opp_overlap 458253 458252 TTGATTGAAGAAGAT TGGCC CGAGAA GGCCA TTGTTTTTTCAAACA TERM 532 458711 - 458697 - g 70 -9.2 -3.63266 | overlap 458700 AAAATTCATCGCAAA CACCCC GCT GGGGCG CGCAATTTACGTGAG Shewmr4_0411 457491 - 458810 + | ATP-dependent RNA helicase RhlB Shewmr4_0412 458811 - 459737 + | Ppx/GppA phosphatase TERM 533 459758 - 459795 + T 100 -14.3 -3.55444 | opp_overlap 459760 459764, overlap 459760 459764 AATCCATTTTAAAAT AATAAAGGCCGCGAAGT TTAC ACTTGGCGGCCTTTATA TTTAGCGACTCGAGA TERM 534 459760 - 459793 + T 100 -16.9 -3.35597 | opp_overlap 459760 459764, overlap 459758 459764 TCCATTTTAAAATAA TAAAGGCCGCGAAGT TTAC ACTTGGCGGCCTTTA TATTTAGCGACTCGA TERM 535 459793 - 459760 - T 100 -16.9 -4.19746 | opp_overlap 459760 459758 459764, overlap 459764 TCCATTTTAAAATAA TAAAGGCCGCGAAGT TTAC ACTTGGCGGCCTTTA TATTTAGCGACTCGA TERM 536 459764 - 459789 + T 100 -13.3 -4.32857 | opp_overlap 459760 459764, overlap 459760 459758 TTTTAAAATAATAAA GGCCGCGAAGT TTAC ACTTGGCGGCC TTTATATTTAGCGAC TERM 537 459789 - 459764 - T 100 -13.3 -4.67697 | opp_overlap 459764 459760 459758, overlap 459760 TTTTAAAATAATAAA GGCCGCGAAGT TTAC ACTTGGCGGCC TTTATATTTAGCGAC Shewmr4_0413 460347 - 459811 - | hypothetical protein Shewmr4_0414 460894 - 460496 - | mutator MutT protein Shewmr4_0415 461148 - 460939 - | hypothetical protein Shewmr4_0416 462005 - 461271 - | hypothetical protein Shewmr4_0417 462615 - 461998 - | dephospho-CoA kinase TERM 538 462042 - 462058 + g 75 -10.9 -3.40546 | opp_overlap 462037, overlap 462040 ATTGTAAATAGCGTT GGTGCAA TGC TTGCACC TCTTGCTTTAGTTTT TERM 539 462581 - 462554 - G 91 -11.4 -4.41348 | TCTTCGGCAAATAAA TTGGCAACGGTA GTTT TACCGCTACCAA TGCCACCCGTTAGGC Shewmr4_0418 463629 - 462703 - | type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A TERM 540 463551 - 463534 - G 82 -7.7 -4.7173 | GACGACATTTAAAAA GCTACCA ATAG TGGCAGC AAACACAAAACTTAA Shewmr4_0419 464950 - 463685 - | type II secretion system protein Shewmr4_0420 466789 - 465080 - | type IV-A pilus assembly ATPase PilB TERM 541 467132 - 467163 + G 100 -10.4 -6.09133 | AGCATTATCTGTTGC GACTAAAAAAACAA TCTA TTGCTTTTTTAGTC TTTTTTTTTGGACTG Shewmr4_0421 466963 - 468294 + | O-antigen polymerase TERM 542 468301 - 468318 + T 73 -8.3 -3.58037 | opp_overlap 468302, overlap 468302 AGTTACTGAACAAAA AGGCCGC AGTA GCGGCCC TTTAACACATTGATG TERM 543 468317 - 468302 - T 100 -11.8 -5.10461 | opp_overlap 468301 468302 GTTACTGAACAAAAA GGCCGC AGTA GCGGCC CTTTAACACATTGAT TERM 544 468302 - 468317 + T 83 -11.8 -2.74501 | opp_overlap 468302, overlap 468301 GTTACTGAACAAAAA GGCCGC AGTA GCGGCC CTTTAACACATTGAT Shewmr4_0422 468716 - 468345 - | methylation site containing protein Shewmr4_0423 471286 - 469613 - | O-antigen polymerase Shewmr4_0424 472226 - 471348 - | nicotinate-nucleotide pyrophosphorylase [carboxylating] Shewmr4_0425 472477 - 473016 + | N-acetyl-anhydromuranmyl-L-alanine amidase Shewmr4_0426 473097 - 473948 + | regulatory protein AmpE TERM 545 474246 - 474274 + F 100 -6.8 -5.93252 | gap 1, opp_overlap 474246 CGCCCGAATTAATCA GGAATTGGTTTGC GAGT GCGG-CCAATTCC TTTTTTGTTTTTAGA TERM 546 474562 - 474550 - f 80 -6.3 -4.87665 | opp_overlap 474550 GCTCACTCATAAAAA TTGGT AAG ACCAA TTTACAACGGAGCTG pdhR 474586 - 475338 + | transcriptional regulator PdhR aceE 475419 - 478085 + | pyruvate dehydrogenase subunit E1 Shewmr4_0429 478098 - 480119 + | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 547 480128 - 480148 + F 88 -6.8 -5.14682 | opp_overlap 480128 TCTGTAAACAAATAA GGCTGCTC ATCTC GAGTGGCC TTTTGTTTATTGTGA Shewmr4_0430 480269 - 481696 + | dihydrolipoamide dehydrogenase TERM 548 481710 - 481739 + F 78 -10.1 -3.52102 | opp_overlap 481705 481717, overlap 481717 481735 AAGCTGAAATCTTTT TTAAAAAGCGTCC ATTA GGGCGCTTTTTTA TTGTCTCGATAAAAT TERM 549 481717 - 481732 + F 100 -8.2 -5.60689 | opp_overlap 481717, overlap 481710 AATCTTTTTTAAAAA GCGTCC ATTA GGGCGC TTTTTTATTGTCTCG TERM 550 481732 - 481717 - f 73 -6 -4.57341 | opp_overlap 481710 481717 AATCTTTTTTAAAAA GCGTCC ATTA GGGCGC TTTTTTATTGTCTCG TERM 551 483166 - 483180 + G 77 -10 -3.68529 | overlap 483163 TCGATTCTAGCAGCA CCAGAG GGG CTCTGG TTTGGCTCATCCAAT TERM 552 483251 - 483268 + G 74 -9.9 -3.63627 | TTCCGATTGAAGGCT TGCTCTC CCAT GAGAGCA TTTACGATATCAGAG Shewmr4_0431 482077 - 486561 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 553 486582 - 486605 + F 100 -9.6 -5.31545 | AGTGTATTCCCTCAA GCCGCAGGTA CTTT TATTTGCGGC TTTTTTGCTATTATT TERM 554 488739 - 488762 + G 71 -5.2 -4.58085 | AAGGACTCGCTGACT GGCGCCCA TAAACTCT TTGGCGCC TTTGTTTATCAGTAT Shewmr4_0432 486792 - 489008 + | patatin TERM 555 489015 - 489044 + F 100 -19.5 -4.83615 | opp_overlap 489012 GCGTTCTAATTACCC CGAAGGGCATAAC TGAG GTTATGCCCTTCG TTTTTATCAACAGTA TERM 556 490611 - 490583 - g 73 -11.9 -2.50779 | opp_overlap 490592, overlap 490578 490592 TGAATATCAAGACAT GATCAACAAGCTT GGT AAGCCTATTGATC GTACCGAGTGGCATA Shewmr4_0433 489219 - 491261 + | endothelin-converting protein 1 TERM 557 491304 - 491324 + T 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCAC Shewmr4_0434 492104 - 491301 - | integrase catalytic subunit TERM 558 491535 - 491515 - G 79 -11.1 -3.54029 | opp_overlap 491514 491515 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 559 491515 - 491535 + g 71 -11.1 -2.79327 | opp_overlap 491515, overlap 491514 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA Shewmr4_0435 492529 - 492134 - | transposase TERM 560 492609 - 492580 - R 93 -12.3 -3.10558 | opp_overlap 492586, overlap 492586 TAGACAGTTGAAAAC GAAAAAGCCAGAC GGAT GTCTGGCTTTTTT ATTTTGCGTCAATCA TERM 561 492603 - 492586 - R 100 -11.3 -5.0925 | opp_overlap 492586, overlap 492580 GTTGAAAACGAAAAA GCCAGAC GGAT GTCTGGC TTTTTTATTTTGCGT TERM 562 492586 - 492603 + r 100 -11.3 -5.80951 | opp_overlap 492586 492580 GTTGAAAACGAAAAA GCCAGAC GGAT GTCTGGC TTTTTTATTTTGCGT Shewmr4_0436 493290 - 492634 - | 2-deoxyglucose-6-phosphatase TERM 563 493408 - 493398 - H 80 -2.6 -5.49809 | overlap 493402 CAAAGTTTAAAAAAA TTTA CCC TAAA CAGGATTTTGTGAGC Shewmr4_0437 493650 - 496322 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 564 496339 - 496368 + T 100 -12.3 -4.33956 | opp_overlap 496340 496346, overlap 496346 CGATTGATATGATAA TGAAAAAGCCAGC GAAA GCTGGCTTTTTTG TTTCTCTATTTTACC TERM 565 496367 - 496340 - T 80 -11.4 -2.68223 | opp_overlap 496339 496346, overlap 496346 GATTGATATGATAAT GAAAAAGCCAGC GAAA GCTGGCTTTTTT GTTTCTCTATTTTAC TERM 566 496346 - 496361 + T 100 -10.4 -5.76237 | opp_overlap 496340 496346, overlap 496339 TATGATAATGAAAAA GCCAGC GAAA GCTGGC TTTTTTGTTTCTCTA TERM 567 496361 - 496346 - T 100 -10.4 -4.94972 | opp_overlap 496346 496339, overlap 496340 TATGATAATGAAAAA GCCAGC GAAA GCTGGC TTTTTTGTTTCTCTA Shewmr4_0438 496999 - 496502 - | anti-RNA polymerase sigma 70 factor TERM 568 497156 - 497129 - H 100 -18.6 -5.27938 | opp_overlap 497126 497123 ATGCGGAAATAAAAA GCCCAACGATAG AAAC CTATCGTTGGGC GAGTAATGTATATAG Shewmr4_0439 497447 - 498511 + | uroporphyrinogen decarboxylase TERM 569 498522 - 498553 + F 76 -11 -2.66291 | opp_overlap 498523 498530, overlap 498530 AGTAAGCGATACTGA AGAAAAAACGGACC TTAA GGTCCGTTTTTTTA TGCTGTGACTCTGTG TERM 570 498552 - 498523 - f 93 -12.3 -3.14522 | opp_overlap 498522 498530, overlap 498530 GTAAGCGATACTGAA GAAAAAACGGACC TTAA GGTCCGTTTTTTT ATGCTGTGACTCTGT TERM 571 498530 - 498545 + F 100 -10.4 -5.69473 | opp_overlap 498523 498530, overlap 498522 ATACTGAAGAAAAAA CGGACC TTAA GGTCCG TTTTTTTATGCTGTG TERM 572 498545 - 498530 - f 100 -10.4 -5.49234 | opp_overlap 498530 498522, overlap 498523 ATACTGAAGAAAAAA CGGACC TTAA GGTCCG TTTTTTTATGCTGTG TERM 573 499521 - 499532 + G 73 -5.8 -4.4891 | AACGCGCCATTGTAT CTGC AGGT GCAG TTTTCTACTGATCCC TERM 574 500190 - 500210 + G 70 -9 -3.53761 | TTCGATGGCATTACC GGCTTGCT TAATC GGCAAGCC TTTGAAGAGCAGTTA Shewmr4_0440 498888 - 501458 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 575 502014 - 502025 + G 82 -3.6 -5.28481 | GCCGCTTCTAAACAT GCTG TTAT CGGC TTTTTTGATTCGCTG Shewmr4_0441 501534 - 502337 + | short chain dehydrogenase TERM 576 502348 - 502372 + T 77 -10.9 -2.80994 | GTTAATGGTTATTTT CCATTGTTAAG GTG TTTAACAATGG TCTGCTCGGCTTCGC Shewmr4_0442 502565 - 502341 - | hypothetical protein TERM 577 502654 - 502677 + r 100 -14 -4.09519 | opp_overlap 502654 502658, overlap 502658 GCTTTCGAGCAAAAA TAAACCTCGC ATCG GCGAGGTTTA TTGTTTATCCATGCT TERM 578 502677 - 502654 - R 100 -14 -4.72272 | opp_overlap 502654 502658, overlap 502658 GCTTTCGAGCAAAAA TAAACCTCGC ATCG GCGAGGTTTA TTGTTTATCCATGCT TERM 579 502673 - 502658 - R 100 -10.4 -4.91852 | opp_overlap 502654 502658, overlap 502654 TCGAGCAAAAATAAA CCTCGC ATCG GCGAGG TTTATTGTTTATCCA TERM 580 502658 - 502673 + r 100 -10.4 -4.63048 | opp_overlap 502658 502654, overlap 502654 TCGAGCAAAAATAAA CCTCGC ATCG GCGAGG TTTATTGTTTATCCA Shewmr4_0443 505943 - 502722 - | hypothetical protein TERM 581 502949 - 502939 - G 74 -6.8 -4.43213 | opp_overlap 502939 502938 CCCAACATATCAAAA TGGC TGC GCCA ATCTTTGCCTGTGAG TERM 582 506111 - 506081 - R 100 -15.7 -2.58812 | opp_overlap 506079 506089, overlap 506089 GTCAAATTTAAGGCA TAAAAAAACCGGC ACATG GCCGGTTTTTTTA AATGAATTGAAGCTT TERM 583 506103 - 506089 - R 100 -8.5 -5.66684 | opp_overlap 506079 506089, overlap 506081 TAAGGCATAAAAAAA CCGGC ACATG GCCGG TTTTTTTAAATGAAT TERM 584 506089 - 506103 + r 100 -8.5 -5.47821 | opp_overlap 506089 506081, overlap 506079 TAAGGCATAAAAAAA CCGGC ACATG GCCGG TTTTTTTAAATGAAT Shewmr4_0444 507423 - 506125 - | phosphoribosylamine--glycine ligase TERM 585 507519 - 507495 - R 100 -16.5 -4.13995 | GTGCGATAAACGAAA CAGCCAGCACA TGG CGTGCTGGCTG TAGGTGGCATTAGTG purH 509127 - 507529 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 586 509371 - 509390 + H 77 -8.6 -3.97947 | CAAAATAGCCCTTGA CCTTGGAG TAGG CTCTAAGG TTTATACTCGCTCCA TERM 587 509599 - 509610 + G 72 -3.6 -4.77165 | overlap 509556 509597 TACCGATGCCGATGC CGCG CGGC TGCG TTTTATTCTGCGGGC zntR 509465 - 509938 + | zinc-responsive transcriptional regulator Shewmr4_0447 509941 - 511431 + | permease TERM 588 511470 - 511451 - T 100 -10 -4.87893 | opp_overlap 511451 AACGCTAACTAAAAA TCCCCAGC AATG ACTGGGGA TTTTTTATTATGACA TERM 589 511451 - 511470 + T 100 -9.3 -5.55769 | opp_overlap 511451 AACGCTAACTAAAAA TCCCCAG CAATGA CTGGGGA TTTTTTATTATGACA Shewmr4_0448 512425 - 511538 - | band 7 protein TERM 590 511577 - 511565 - G 75 -9.1 -3.93695 | TTTAGCATCGATAAA GGGCA GGG TGCCC GTTGGCAGCACTGTG Shewmr4_0449 512766 - 513020 + | hypothetical protein Shewmr4_0450 513024 - 513314 + | hypothetical protein TERM 591 513789 - 513800 + G 71 -7.2 -4.09276 | overlap 513787 GGTGTCTATGTGCTC GGCG TCGC CGCC TTCTTATATTTCTTG Shewmr4_0451 513321 - 514940 + | PepSY-associated TM helix domain-containing protein TERM 592 514940 - 514969 + T 100 -15.1 -3.14931 | opp_overlap 514945, overlap 514945 TTCAAAAACAGTTTG AAAAATGGGCGCC TTAA GGCGCCCATTTTG TTACTGAGCAATAGG TERM 593 514964 - 514945 - T 100 -15 -4.62904 | opp_overlap 514940 514945 AAACAGTTTGAAAAA TGGGCGCC TTAA GGCGCCCA TTTTGTTACTGAGCA TERM 594 514945 - 514964 + T 100 -15 -4.71426 | opp_overlap 514945, overlap 514940 AAACAGTTTGAAAAA TGGGCGCC TTAA GGCGCCCA TTTTGTTACTGAGCA Shewmr4_0452 516159 - 514987 - | major facilitator transporter Shewmr4_0453 517418 - 516381 - | diguanylate cyclase with GAF sensor Shewmr4_0454 517717 - 517980 + | hypothetical protein Shewmr4_0455 518068 - 519471 + | anion transporter TERM 595 519520 - 519492 - T 100 -13.3 -3.6682 | opp_overlap 519497, overlap 519497 CCTGATTCATCCAAA TAAAATACCCAGC TAG GCTGGGTATTTTT ATGGGCGAAACTATA TERM 596 519515 - 519497 - T 100 -13.2 -4.90778 | opp_overlap 519497, overlap 519492 TTCATCCAAATAAAA TACCCAGC TAG GCTGGGTA TTTTTATGGGCGAAA TERM 597 519497 - 519515 + T 100 -13.2 -4.82901 | opp_overlap 519497 519492 TTCATCCAAATAAAA TACCCAGC TAG GCTGGGTA TTTTTATGGGCGAAA Shewmr4_0456 519962 - 519540 - | thioredoxin Shewmr4_0457 520152 - 520487 + | peptidylprolyl isomerase, FKBP-type TERM 598 520501 - 520523 + F 100 -13.5 -4.10179 | opp_overlap 520488 AAGCGTCAGCTTGAT GGAGTCAGC ATCTG GCTGACTCC TTTGTATGGCTTGTC TERM 599 520683 - 520663 - g 70 -4.7 -4.59342 | overlap 520659 TGCAGCACAAATAAA GCAACTTCA GGC CGAAATCGC CGAACTTAAACGTGA TERM 600 520910 - 520892 - g 76 -8.2 -4.20136 | AGCTGGAAAAGCAAA CTTCATCC AGA GGATAAAG ACTGGGTAATCAAAG Shewmr4_0458 520634 - 521620 + | diguanylate cyclase with PAS/PAC sensor Shewmr4_0459 522065 - 521667 - | hypothetical protein Shewmr4_0460 524132 - 522099 - | TRAP transporter, 4TM/12TM fusion protein TERM 601 523429 - 523404 - G 70 -8.3 -3.67864 | gap 1 CAAGGGAATGGTAAA TTGCC-CCGTGG TCA CCACGTTGGCAA CTCCCGAGCCCGTGA TERM 602 524172 - 524200 + r 100 -16.2 -3.05816 | ACAGAGGGCGACGCA GCACTTGAGTGA CGCTA TCACTCAAGTGC TTAGGTGAAAAATGG Shewmr4_0461 525196 - 524240 - | TRAP transporter solute receptor TAXI family protein TERM 603 525656 - 525637 - R 100 -8.6 -5.10461 | opp_overlap 525637 525650 GCGAGCCAATAAAAA GGGCTAAC CGCA GTTAACCC TTAATTGTCGATATT Shewmr4_0462 525833 - 525699 - | hypothetical protein TERM 604 525739 - 525756 + g 71 -5.5 -4.46615 | TTAGACGCGTTTTTG GCGTGTT TTGC GGCACGC TTTTCCTTCATCGTC Shewmr4_0463 527628 - 526135 - | protein of unknown function DUF853, NPT hydrolase putative Shewmr4_0464 528088 - 528321 + | hypothetical protein Shewmr4_0465 528333 - 528758 + | hypothetical protein Shewmr4_0466 528806 - 529687 + | protein of unknown function, zinc metallopeptidase putative Shewmr4_0467 529716 - 530123 + | NUDIX hydrolase Shewmr4_0468 530166 - 531170 + | SecC motif-containing protein Shewmr4_0469 531181 - 532299 + | hypothetical protein Shewmr4_0470 533759 - 532446 - | hypothetical protein Shewmr4_0471 536794 - 534479 - | hypothetical protein TERM 605 535656 - 535672 + g 87 -8.1 -4.83243 | opp_overlap 535656 ATCTTTTGAGAGATA TCAAATG GAT CATTTGA TTTATTTTCTATACA TERM 606 536380 - 536394 + g 80 -2.8 -5.28831 | overlap 536374 536368 536367 TTTCTGAAGCTGATT CTTTCA GTT TGAGGG TTTTATTTTGTTCAT Shewmr4_0472 537042 - 536800 - | hypothetical protein TERM 607 537311 - 537276 - H 100 -14 -3.72695 | opp_overlap 537308 AGCGCTGTCATGAAA GTGACCGTCCGTGACA TGGA TGTCACGGTCGAGCAC ACAGGGATGTGCTTG TERM 608 539148 - 539131 - g 70 -4.7 -4.60487 | overlap 539139 TACGAGGCGGAAAAA GGCGAGA AGGC CCACGCC CGTATCGAAAACTTA TERM 609 539640 - 539625 - g 71 -6.8 -4.21194 | opp_overlap 539635 CTTCAGTACGCAAAA GTCGGC GGTC GCCAAC GATACTGGCTTTAGC uvrD 537637 - 539805 + | DNA-dependent helicase II ubiA 539931 - 540791 + | 4-hydroxybenzoate octaprenyltransferase Shewmr4_0475 541114 - 540860 - | hypothetical protein TERM 610 541094 - 541105 + g 76 -3 -5.15969 | overlap 541084 AAACTTAAGGTTGTT TACA ATCT TGTA TTTTTTCACTTCGAG Shewmr4_0476 541423 - 542484 + | 2-nitropropane dioxygenase, NPD TERM 611 542663 - 542641 - g 70 -4.2 -4.70879 | overlap 542643 GTTAAATGCTAAAAA TCCAACTTAG ACG CCAAGTTAAA TACCGCATTGCCTTT TERM 612 543122 - 543106 - g 70 -2.2 -5.04325 | CTGAAACGATAAAAA GGGAGT CAATT AATCCC AAAAAGCCGTCAGAG Shewmr4_0477 542631 - 543785 + | hypothetical protein TERM 613 543877 - 543842 - f 76 -9.3 -3.53012 | opp_overlap 543842 543838 TCGCTTCTGCTCAAA TAGGCTTAAATTTTA CATGGC TAAAATATAAGCCTA TTCATTTATACTGGC TERM 614 543842 - 543877 + F 78 -9.3 -3.63228 | opp_overlap 543842, overlap 543838 TCGCTTCTGCTCAAA TAGGCTTAAATTTTA CATGGC TAAAATATAAGCCTA TTCATTTATACTGGC TERM 615 544169 - 544156 - g 73 -3.1 -5.01732 | AACCTCCTTAAAAAA CATCG CTGG CGATA AACCGATTTACCTTA Shewmr4_0478 544028 - 544948 + | redoxin domain-containing protein TERM 616 544965 - 544987 + F 100 -14.2 -3.57263 | opp_overlap 544962 GATTTTCAACCATTT GGCCTTCGAG ATA TTCGAAGGCC TTTGGGGATACAAGT TERM 617 545108 - 545124 + F 93 -10.9 -4.16921 | AAAGGCTGGTTGTTG CTTGGCA CTC TGCCAAG TTTTCCGCCTTGTTG Shewmr4_0479 545166 - 546284 + | hypothetical protein Shewmr4_0480 546571 - 546281 - | putative mitomycin resistance protein Shewmr4_0481 547686 - 546640 - | response regulator receiver modulated metal dependent phosphohydrolase TERM 618 549605 - 549594 - g 71 -5.8 -4.2828 | opp_overlap 549603 TTTTATTGATGAAAA CGGT ATTC ACCG CGGCATGATGGCGGA TERM 619 549807 - 549830 + G 73 -11 -2.90307 | overlap 549806 549815 GTATCCGCCCGTGAT TGTGACCCCT ATTG AGGGGACACA CTTTAATAGTCTTGA Shewmr4_0482 548242 - 553287 + | multi-sensor hybrid histidine kinase TERM 620 553342 - 553363 + G 71 -5.7 -4.28018 | opp_overlap 553339 TGCGTAAGATTATGG CCGAGCAGC TGCG GCAACTCGG TTTTGGTCAGGTGTT TERM 621 553867 - 553889 + G 74 -11.3 -3.14944 | opp_overlap 553867 553870, overlap 553870 AAATTTGCCAATCAA CAACGCCGC CCGAT GCGGTGTTG TTAGATGTGATGATG TERM 622 553935 - 553974 + G 70 -2.7 -4.82901 | overlap 553936 553938 553939 CACCAAGTGCTGCAA GCCTTGAGATCTGAGCC TAAATC GGCGCAGATCCCAGTGA TTTTTGTCAGCGCCC Shewmr4_0483 553278 - 554852 + | response regulator receiver sensor signal transduction histidine kinase TERM 623 554943 - 554994 + T 100 -13.9 -4.28651 | gap 2, opp_overlap 554945, overlap 554941 554945 CGCATCGGACTAAGG AAGCGGCCTAGGCTGCAT-GC-TGT TGCT ACATGCTGTGCAGCCTAGGCAGCTG TTTTACGCTTTTACT TERM 624 554945 - 554992 + T 100 -16.5 -3.73411 | gap 2, opp_overlap 554945, overlap 554941 554943 CATCGGACTAAGGAA GCGGCCTAGGCTGCAT-GC-TGT TGCT ACATGCTGTGCAGCCTAGGCAGC TGTTTTACGCTTTTA TERM 625 554992 - 554945 - T 100 -14.3 -3.40371 | gap 2, opp_overlap 554941 554945 554943 CATCGGACTAAGGAA GCGGCCTAGGCTGCA-TGC-TGT TGCT ACATGCTGTGCAGCCTAGGCAGC TGTTTTACGCTTTTA Shewmr4_0484 555575 - 554997 - | hypothetical protein TERM 626 555728 - 555702 - R 78 -8.7 -3.90048 | overlap 555700 CCTTGGGGAAAAATA CCCGCTGCC AAATTGGGG AGCAGCGGG CTTCGGCAAAGATTT Shewmr4_0485 556422 - 555838 - | redoxin domain-containing protein TERM 627 556183 - 556206 + g 71 -6.8 -4.20817 | gap 1 AGTCGCCCACAGATT CACTAAGGTCA GTT TG-CCTTGGTG TTGTTTTAAGCTGTG Shewmr4_0486 556913 - 556479 - | cytochrome C biogenesis protein Shewmr4_0487 558949 - 556910 - | cytochrome c-type biogenesis protein CcmF TERM 628 559518 - 559534 + G 73 -3 -4.94962 | opp_overlap 559518, overlap 559513 GATGGAAATCCAAAG TAGCAT TAAGC GTGCTA TTTTGTTTAGGTTCT TERM 629 559688 - 559713 + G 78 -9.7 -3.83318 | opp_overlap 559688 AATTTAATGGAGAAA TCCCGCGGTGT GAAA ACACTGCAGGA TTATATTGTTCAAGA TERM 630 559713 - 559688 - g 80 -9.7 -3.98484 | opp_overlap 559688 AATTTAATGGAGAAA TCCCGCGGTGT GAAA ACACTGCAGGA TTATATTGTTCAAGA Shewmr4_0488 559496 - 561625 + | cytochrome c, putative TERM 631 561914 - 561926 + G 70 -4.7 -4.70659 | GGCGGATGGTTTTAT CCCCG GAG CGGTG TTTTTCAATGTGCAG Shewmr4_0489 561684 - 562127 + | rhodanese domain-containing protein TERM 632 562269 - 562259 - g 70 -2.4 -5.0538 | opp_overlap 562266, overlap 562261 TTTTATCCCAAAAAA CCTC ACA GTGG CGACCTGCGCTGCAT TERM 633 563004 - 562968 - g 70 -4.4 -4.73105 | gap 2, opp_overlap 562987 563003 563003 AGCGAGAAAAAAGAA GCCCGCATGATGGGCATG ATG CCTGCCCA-C-TAAGGGC TAAGCATTGGCTTAG Shewmr4_0490 562221 - 563000 + | FKBP-type peptidyl-prolyl isomerase domain-containing protein TERM 634 563161 - 563145 - g 70 -9.4 -3.53444 | GCACGCGCGTTTAAA CCAGCG GCAAA CGCTGG TGGGAGAGTCTCAAG Shewmr4_0491 563065 - 563739 + | formate-dependent nitrite reductase, NrfG protein Shewmr4_0492 563826 - 564533 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewmr4_0493 564536 - 565483 + | polysulphide reductase, NrfD Shewmr4_0494 565603 - 566094 + | NosL family protein Shewmr4_0495 566104 - 567393 + | periplasmic copper-binding TERM 635 567772 - 567760 - g 73 -10.5 -3.27525 | overlap 567755 TTTTGCCAAACTTAA GGGGG TCG CCCCC AAGCGAGTATCCATT TERM 636 567994 - 567979 - g 71 -10.4 -3.17571 | overlap 567966 AATGGCGCAACTGAA GGCGCA GGGC TGCGCC ATCATCATCAGTACT TERM 637 568074 - 568086 + G 75 -9.1 -3.87869 | GCCAAGGTCGGCTGC TCGCC TCG GGCGA TTTATCGCAGCTTAG Shewmr4_0496 567374 - 568420 + | ABC transporter related TERM 638 568666 - 568681 + G 71 -6.8 -4.26903 | CTCGCGGTGTTTATC TTGCCC TTGG GGGCGA TTTTACTCAGCTACG Shewmr4_0497 568417 - 569304 + | copper ABC transporter, permease protein Shewmr4_0498 569518 - 570801 + | lysine decarboxylase transcriptional regulator, CadC TERM 639 570814 - 570845 + F 100 -12.4 -4.72272 | opp_overlap 570820, overlap 570815 570816 TAACCTAGTGTGTTA TGCAAACAGCCGAT AGCC ATCGGCTGTTTGGG TTTTTGCTAGCAGCA TERM 640 570815 - 570844 + F 100 -13.7 -3.43042 | opp_overlap 570820, overlap 570814 570816 AACCTAGTGTGTTAT GCAAACAGCCGAT AGCC ATCGGCTGTTTGG GTTTTTGCTAGCAGC TERM 641 570816 - 570843 + F 100 -17.2 -2.65504 | opp_overlap 570820, overlap 570815 570814 ACCTAGTGTGTTATG CAAACAGCCGAT AGCC ATCGGCTGTTTG GGTTTTTGCTAGCAG TERM 642 570839 - 570820 - f 93 -12.2 -3.64822 | opp_overlap 570816 570815 570814 AGTGTGTTATGCAAA CAGCCGAT AGCC ATCGGCTG TTTGGGTTTTTGCTA Shewmr4_0499 571034 - 573166 + | endothelin-converting protein 1 TERM 643 573184 - 573201 + T 100 -11.3 -5.45652 | opp_overlap 573184 GTAAGTCGATAAAAA GGGAACC CTAG GGTTCCC TTTTTTGTTAGCGAT TERM 644 573201 - 573184 - T 100 -11.3 -4.87786 | opp_overlap 573184 GTAAGTCGATAAAAA GGGAACC CTAG GGTTCCC TTTTTTGTTAGCGAT Shewmr4_0500 575602 - 573209 - | fatty acid cistrans isomerase TERM 645 576852 - 576822 - g 70 -2.5 -5.00884 | gap 1, overlap 576823 AGCGGTGCGAAAAAA CGCATCCGCCCAGC TAAC GCTGAG-GATTACG CGGGTCATGGTTCTC TERM 646 578249 - 578239 - g 74 -2.4 -5.09426 | TGGAATGTGAAAAAA CCTG TAG CTGG ATGCGTACCGTTAAG Shewmr4_0501 575886 - 580832 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 647 580845 - 580885 + F 89 -12.2 -3.29109 | gap 1, opp_overlap 580857, overlap 580851 580857 580881 580882 TAATTAGCCTATAGT TCTAGTCAAAAAGAGGGAC GCAT GTCCCTCTTTTT-ATTGGA TTAATATCCAGTTTT TERM 648 580851 - 580880 + F 93 -12.3 -3.22521 | opp_overlap 580857, overlap 580845 580857 GCCTATAGTTCTAGT CAAAAAGAGGGAC GCAT GTCCCTCTTTTTA TTGGATTAATATCCA TERM 649 580874 - 580857 - f 100 -11.3 -4.66163 | opp_overlap 580851 580845 580857 AGTTCTAGTCAAAAA GAGGGAC GCAT GTCCCTC TTTTTATTGGATTAA TERM 650 580857 - 580874 + F 100 -11.3 -5.13741 | opp_overlap 580857, overlap 580851 580845 AGTTCTAGTCAAAAA GAGGGAC GCAT GTCCCTC TTTTTATTGGATTAA Shewmr4_0502 580981 - 581607 + | flavoprotein oxygenase TERM 651 581617 - 581633 + T 95 -9.5 -4.56775 | GTGTAGGTGGTGGTA CTCAAAC TTC GTTTGAG TTTTTAAAGCAAAAT TERM 652 581698 - 581718 + T 88 -9.7 -4.11692 | opp_overlap 581698 AAGAGCCGACCAAAA GGGGAAAAG CGC CTGTTCCCC TTTTGGAAATCCCTC TERM 653 581718 - 581698 - T 93 -9.7 -4.28018 | opp_overlap 581698 AAGAGCCGACCAAAA GGGGAAAAG CGC CTGTTCCCC TTTTGGAAATCCCTC Shewmr4_0503 583914 - 582004 - | hypothetical protein TERM 654 582881 - 582897 + g 70 -2.3 -5.02476 | overlap 582884 AATAAAGGGGAGTTA GGATTAA AAG TTAATAC TTTTTTAGGGAGTAT TERM 655 583374 - 583388 + g 71 -5.6 -4.50627 | opp_overlap 583368 583364 583373, overlap 583363 ACCAATCAACATCAT CGATGC TGA GCTTCG TTTCTTTAATGAGTG TERM 656 583985 - 583999 + H 70 -2.8 -4.93877 | overlap 583986 AATATCATTGGAGTT CGTCAT AAT ATGACA TTTTATTTAGTCAGC Shewmr4_0504 584225 - 585238 + | transposase IS116/IS110/IS902 family protein TERM 657 585562 - 585579 + T 100 -11.3 -4.56978 | opp_overlap 585562 CACTTAAAAACAAAA CCCCAGT AAAA ACTGGGG TTTATTGTTTGAGCC TERM 658 585579 - 585562 - T 100 -11.3 -5.2853 | opp_overlap 585562 CACTTAAAAACAAAA CCCCAGT AAAA ACTGGGG TTTATTGTTTGAGCC fre 586336 - 585638 - | FMN reductase TERM 659 586388 - 586401 + r 76 -9.5 -3.43553 | opp_overlap 586388, overlap 586386 TAGGTGTCACATTAA GGCCG CTGG CGGCC TATTCTCTTGGCTTA TERM 660 586401 - 586388 - R 74 -9.5 -3.2614 | opp_overlap 586388 586386 TAGGTGTCACATTAA GGCCG CTGG CGGCC TATTCTCTTGGCTTA Shewmr4_0506 587928 - 586447 - | 3-octaprenyl-4hydroxybenzoate decarboxylase Shewmr4_0507 588087 - 588857 + | hypothetical protein TERM 661 588879 - 588901 + F 100 -6.9 -5.7946 | overlap 588881 TTTAGGCCTTATCGA CGGGAGCCC CGAGT GGGCTCCTA TTTTTTTCTTAGCCA TERM 662 588881 - 588899 + F 100 -11.7 -4.54306 | overlap 588879 TAGGCCTTATCGACG GGAGCCC CGAGT GGGCTCC TATTTTTTTCTTAGC Shewmr4_0508 588949 - 590160 + | major facilitator transporter TERM 663 590170 - 590197 + T 100 -15.6 -3.67141 | opp_overlap 590162 590161 GATTAAGCTGACCAT GACGGCGCAGAT CTAT ATCTGCGCCGCC TTTAAGTAAACTTCT Shewmr4_0509 590889 - 590212 - | short-chain dehydrogenase/reductase SDR TERM 664 590653 - 590636 - G 79 -11.3 -3.51411 | overlap 590632 AGTGCGCCAAAGTAA CCACTGC CAGC GCAGTGG ATGACCGTGTTGGGG Shewmr4_0510 591372 - 590905 - | biotin carboxyl carrier protein Shewmr4_0511 591841 - 591407 - | 3-dehydroquinate dehydratase Shewmr4_0512 592356 - 591943 - | hypothetical protein Shewmr4_0513 592505 - 592870 + | hypothetical protein Shewmr4_0514 592907 - 593110 + | hypothetical protein Shewmr4_0515 593274 - 593723 + | hypothetical protein Shewmr4_0516 593938 - 595308 + | outer membrane efflux protein Shewmr4_0517 595325 - 596617 + | RND family efflux transporter MFP subunit TERM 665 599555 - 599577 + G 70 -9.1 -3.60525 | overlap 599545 TTGATCGGCGGTATC GTGGCGCTG TTTGT CAGCGGCAC TTATCTGTCGGTACC Shewmr4_0518 596714 - 599926 + | CzcA family heavy metal efflux protein TERM 666 599934 - 599967 + F 100 -13.3 -3.09492 | gap 1, overlap 599935 CCGCCTAGTGGGATG TTGAGCCTTGGCCTCA TTT TGTGG-CAAGGCTCAA TGTTAAAGTTAAAAA Shewmr4_0519 600056 - 600142 + | hypothetical protein TERM 667 600242 - 600280 + F 72 -9.4 -3.10134 | opp_overlap 600243 600250, overlap 600241 TTTTGAATTAATGCA ACGCAGAAGTGGAGTGCC ATG GGCGCTCCGTCTCGGCGG GTTTTAACGTACTTT Shewmr4_0520 600392 - 600646 + | hypothetical protein TERM 668 600696 - 600669 - T 100 -11.4 -5.61596 | opp_overlap 600674 ACTTGCATAAAAAAA CAAAACCCATCG AAGT CGATGGGTTTTT TATTGCAATCAATTG TERM 669 600674 - 600691 + T 100 -11.3 -5.46657 | opp_overlap 600669 CATAAAAAAACAAAA CCCATCG AAGT CGATGGG TTTTTTATTGCAATC mscL 601142 - 600732 - | large-conductance mechanosensitive channel Shewmr4_0522 602279 - 601326 - | LysR family transcriptional regulator Shewmr4_0523 602377 - 603432 + | secretion protein HlyD family protein TERM 670 604502 - 604513 + G 100 -7.2 -5.56264 | GACGGGCGTTATTTA GCCG CCTT CGGC TTTTTTATGTTTGCC Shewmr4_0524 603446 - 605053 + | EmrB/QacA family drug resistance transporter TERM 671 605356 - 605384 + F 100 -14 -5.24129 | overlap 605345 605344 CAATGCGTAACCCTT GCGCCTTAATTC CCCCA GGATTAAGGCGC TTTTTTATGCGGCGA Shewmr4_0525 605449 - 605922 + | GCN5-related N-acetyltransferase Shewmr4_0526 605966 - 606292 + | antibiotic biosynthesis monooxygenase Shewmr4_0527 606618 - 607982 + | sigma-54 dependent trancsriptional regulator TERM 672 609471 - 609453 - g 73 -5.2 -4.60889 | AACTATTGCGAAAAA CTGCAGCG TAT CACTGGAG GAAAATAGTGGCTTA Shewmr4_0528 608182 - 609903 + | hypothetical protein TERM 673 609923 - 609952 + T 100 -15.1 -3.77607 | opp_overlap 609929, overlap 609929 TTGAGTTGAGTTTGC GCAAAAGGGCCGT TATC ACGGCCCTTTTTC TTTGATGAGATTATT TERM 674 609946 - 609929 - T 100 -12.7 -4.08216 | opp_overlap 609929 609923 TGAGTTTGCGCAAAA GGGCCGT TATC ACGGCCC TTTTTCTTTGATGAG TERM 675 609929 - 609946 + T 100 -12.7 -5.33405 | opp_overlap 609929, overlap 609923 TGAGTTTGCGCAAAA GGGCCGT TATC ACGGCCC TTTTTCTTTGATGAG Shewmr4_0529 611924 - 609963 - | peptidase M11, gametolysin TERM 676 611756 - 611772 + g 70 -3 -4.88918 | GGATCGATGTTAAGG CTAAGT CGTGC ACTTGG TTTTGTTTACCGTGG TERM 677 612072 - 612102 + H 71 -9.8 -2.70143 | gap 1, opp_overlap 612071 612079, overlap 612069 612067 AATGAATGTATATAG GCTGAAACCCAGC AAATAC GC-GGGTTTCGGC TGATATCGTTGAAAT TERM 678 612159 - 612147 - H 70 -7.7 -3.66166 | TGTTCAAAAAATATA CTGGT TAA ACCAG GCTGAATTTTGACTG TERM 679 612395 - 612413 + H 78 -6 -4.81359 | opp_overlap 612395 TTATCCAAAGCAGAA CGCTTAGT AGC AGTAAGCG TTTTATCTTTAAATT TERM 680 613779 - 613816 + G 77 -9.2 -4.08144 | gap 1, opp_overlap 613775 613776, overlap 613775 CAGGCGATTAATGCG CCGCGCAG-CATTCC CTTAAGGCA GGAATGGCAGCGCGG TTTGTAATTGATCAC Shewmr4_0530 612936 - 613823 + | radical SAM domain-containing protein TERM 681 613842 - 613862 + T 91 -6.7 -5.4505 | opp_overlap 613842 ATCACCGAGTAAAAA GCCCCAGAA AGA TGCCGGGGC TTTTTTATTGGAAAC TERM 682 613862 - 613842 - T 100 -8.9 -4.75372 | opp_overlap 613842 ATCACCGAGTAAAAA GCCCCAGAA AGA TGCCGGGGC TTTTTTATTGGAAAC Shewmr4_0531 615999 - 613891 - | TonB-dependent siderophore receptor TERM 683 615339 - 615350 + g 70 -2.2 -5.055 | CCCAAAGCAAAGAAG GGGT TAAA ATCC TTTTTTCCGAATTAA TERM 684 615998 - 615984 - G 74 -4.3 -4.84527 | GGGATACACGAAAAA TGTCT TTAGT AGACA TATGGATAGGCTCCG Shewmr4_0532 616319 - 616663 + | ArsR family transcriptional regulator Shewmr4_0533 616699 - 617718 + | bile acid:sodium symporter TERM 685 617852 - 617874 + G 74 -2.1 -5.1244 | overlap 617870 CGGCGCTGTGCATTT TTTTGTTGA AGATG TCAGTAAAA TTTTTATATTGCTGG TERM 686 618003 - 618016 + G 72 -3.8 -4.78107 | CTGGGGTCGATATTT GGTG CCATCA CACC TTTTTGCTCATGCTC Shewmr4_0534 617760 - 618755 + | permease Shewmr4_0535 618765 - 619001 + | redox-active disulfide protein 2 Shewmr4_0536 619186 - 620199 + | glyceraldehyde-3-phosphate dehydrogenase Shewmr4_0537 620209 - 621471 + | major facilitator transporter Shewmr4_0538 621476 - 622345 + | hypothetical protein TERM 687 622821 - 622809 - g 91 -3.3 -5.74288 | AGAAACAATAAAAAA CGTGC TAA GCATG AGTTAGAACCCTTAG Shewmr4_0539 622464 - 623906 + | RNA-metabolizing metallo-beta-lactamase TERM 688 623909 - 623942 + T 83 -11.8 -2.79952 | gap 1, opp_overlap 623911, overlap 623907 623902 GGTGACAGCTTAAGC GATAGTCCACAGCCC GAATA GGGCTGTGG-CTAAC TGATTGAATTAATCT TERM 689 623940 - 623911 - T 90 -13 -2.54523 | gap 1, opp_overlap 623909 623907 623902 TGACAGCTTAAGCGA TAGTCCACAGCCC GAATA GGGCTGTGG-CTA ACTGATTGAATTAAT Shewmr4_0540 625306 - 623951 - | hypothetical protein Shewmr4_0541 625586 - 626548 + | hypothetical protein TERM 690 626602 - 626567 - T 71 -9.6 -3.01217 | overlap 626560 TAAAATAACAGTATA TTGTCGCACCCAGCCC CAAG GAGCTGGGTGAGGCAT GTAACGAAAAACGCA Shewmr4_0542 626832 - 626656 - | hypothetical protein TERM 691 626987 - 627002 + H 82 -7.6 -4.5442 | GCTATTTTGGGCTAT TTCAGC GAGT GCTGAA TTTTGTGATTAAGCG TERM 692 627038 - 627079 + H 80 -9.8 -3.64703 | gap 1, opp_overlap 627049, overlap 627044 CTCATTATTTTTATT TTCTAAGTTAATTCCTACT TAAAT AGTCGGAATTAACTT-GAA TTTGCCTGAAACACC TERM 693 627044 - 627074 + H 76 -9.9 -3.29324 | opp_overlap 627049, overlap 627038 ATTTTTATTTTCTAA GTTAATTCCTACT TAAAT AGTCGGAATTAAC TTGAATTTGCCTGAA TERM 694 627857 - 627827 - g 70 -8.5 -3.75506 | gap 2, opp_overlap 627838 ATAACGGAGGAAGAA CGTAAACAACAGGCC ATA GGC--GTTGTTTACG CCCCATTTCGTATGA Shewmr4_0543 627149 - 629302 + | multi-sensor signal transduction histidine kinase Shewmr4_0544 629299 - 629733 + | response regulator receiver protein Shewmr4_0545 629743 - 631461 + | response regulator receiver modulated diguanylate cyclase/phosphodiesterase TERM 695 632182 - 632196 + G 90 -10 -4.46212 | TAAGGAGTCCAACGG CAGCGA TAT TCGCTG TTTTGTGGTCGGCGA TERM 696 632319 - 632301 - g 87 -7.4 -5.04601 | overlap 632294 GCGAGAAAGTAAAAA TTACGCCC GAA GAGCGCAA GATGGCGGTTGCCGC Shewmr4_0546 631628 - 632533 + | alpha-L-glutamate ligase TERM 697 632529 - 632569 + T 100 -16.3 -4.27483 | opp_overlap 632515 632540, overlap 632540 ATCGCGCCGTGATAG CCTAACAAAAACGCCGCGA TTA TCGCGGCGTTTTTTTTGCG TTTAATTTTATAAAT TERM 698 632558 - 632540 - T 100 -16 -5.09204 | opp_overlap 632529 632540, overlap 632515 ATAGCCTAACAAAAA CGCCGCGA TTA TCGCGGCG TTTTTTTTGCGTTTA TERM 699 632540 - 632558 + T 100 -16 -5.89947 | opp_overlap 632515 632540, overlap 632529 ATAGCCTAACAAAAA CGCCGCGA TTA TCGCGGCG TTTTTTTTGCGTTTA Shewmr4_0547 633269 - 632577 - | hypothetical protein TERM 700 633517 - 633534 + r 82 -8.4 -4.40358 | opp_overlap 633517 TGAGGGCAAAAAAAA CGCCTC ACAGAG GAGGCG TTTTATAAAATCAAT TERM 701 633534 - 633517 - R 100 -8.4 -5.78622 | opp_overlap 633517 TGAGGGCAAAAAAAA CGCCTC ACAGAG GAGGCG TTTTATAAAATCAAT Shewmr4_0548 633832 - 633560 - | histone family protein DNA-binding protein TERM 702 633614 - 633627 + g 71 -5.3 -4.48902 | CTTAGGCACAGTGGC TTCAG CGAT CTGAA TTTCTTTACCTGTCT Shewmr4_0549 634776 - 633979 - | response regulator receiver protein Shewmr4_0550 635234 - 634851 - | hypothetical protein TERM 703 635578 - 635593 + G 74 -4 -5.01042 | gap 1 TTCCGATTATGCTTT TGC-CGA ATT TCGCGCA TTTTTAATTTCACTT Shewmr4_0551 635360 - 635869 + | hypothetical protein Shewmr4_0552 636190 - 635876 - | hypothetical protein TERM 704 636227 - 636210 - R 75 -2 -5.29846 | gap 1, opp_overlap 636210 636213 636221 636225, overlap 636204 AACTCCAAATAAAAA TC-ACCG GAACT CGGTCGA TTTTTAAATCGTCGT Shewmr4_0553 636648 - 636340 - | hypothetical protein Shewmr4_0554 636919 - 637443 + | hypothetical protein Shewmr4_0555 639217 - 637466 - | diguanylate cyclase/phosphodiesterase TERM 705 637505 - 637537 + g 100 -17.2 -5.53288 | opp_overlap 637507 637514 ATTGAGTTCTTCTAA CAGGCAAAATCCGT TACTC GCGGATTTTGCCTG TTTTTTTGCCTTGGC TERM 706 637535 - 637507 - G 80 -13.3 -3.02144 | opp_overlap 637505, overlap 637514 TGAGTTCTTCTAACA GGCAAAATCCG TTACTCG CGGATTTTGCC TGTTTTTTTGCCTTG TERM 707 639322 - 639346 + r 86 -8.7 -4.25681 | opp_overlap 639322 GTAAATGAGAGCAAA CGCTGAAAT TGATGAT ATTTCAGCG TTTATTGAATTAGCT TERM 708 639346 - 639322 - R 80 -8.7 -3.91087 | opp_overlap 639322 GTAAATGAGAGCAAA CGCTGAAAT TGATGAT ATTTCAGCG TTTATTGAATTAGCT Shewmr4_0556 639664 - 639356 - | hypothetical protein Shewmr4_0557 639713 - 640609 + | GumN family protein TERM 709 640689 - 640735 + T 91 -13.3 -2.50291 | opp_overlap 640701 640704, overlap 640698 640701 640704 AAGTTCAAATCAACG GTTTTAAAATAATAAGGACGC CTCTT GCGTCCTTATTGTTTTGCGAC ATTACTCGGGTGCTT TERM 710 640698 - 640726 + T 100 -12.6 -4.11751 | opp_overlap 640701 640704, overlap 640689 640701 640704 TCAACGGTTTTAAAA TAATAAGGACGC CTCTT GCGTCCTTATTG TTTTGCGACATTACT TERM 711 640723 - 640701 - T 100 -12.1 -4.17316 | opp_overlap 640698 640689 640701 640704, overlap 640704 ACGGTTTTAAAATAA TAAGGACGC CTCTT GCGTCCTTA TTGTTTTGCGACATT TERM 712 640701 - 640723 + T 100 -12.1 -4.18164 | opp_overlap 640701 640704, overlap 640698 640689 640704 ACGGTTTTAAAATAA TAAGGACGC CTCTT GCGTCCTTA TTGTTTTGCGACATT TERM 713 640704 - 640720 + T 85 -9.4 -4.20868 | opp_overlap 640701 640704, overlap 640701 640698 640689 GTTTTAAAATAATAA GGACGC CTCTT GCGTCC TTATTGTTTTGCGAC TERM 714 640720 - 640704 - T 85 -9.4 -4.20868 | opp_overlap 640704 640701 640698 640689, overlap 640701 GTTTTAAAATAATAA GGACGC CTCTT GCGTCC TTATTGTTTTGCGAC Shewmr4_0558 641525 - 640737 - | methyltransferase type 11 TERM 715 640833 - 640874 + g 78 -3.7 -5.06451 | gap 1, overlap 640837 GGAATATTCGAGCTC CATC-GTCAGCAGCTTTTGA TAG TCAAAATCCGCAGGCTGGTG TTTTTTCAAATAGTC TERM 716 641055 - 641069 + g 87 -10 -4.30987 | opp_overlap 641053 CGACACTAACGCATG GAAGCG CAT CGCTTC TTTATTGTAAAACAT TERM 717 641106 - 641096 - G 70 -8.2 -3.71075 | overlap 641094 ACATCAGCGAAAACA GCCC ATT GGGC TTAAGCATGGTCAGC TERM 718 641611 - 641621 + H 71 -3.2 -5.02201 | GAATCGTAAACTCAT CCTA GTA TGGG TTTTTGTAATGTTTT Shewmr4_0559 641888 - 642751 + | dehydratase TERM 719 642765 - 642781 + T 100 -15.1 -5.19251 | opp_overlap 642765 AAGCATGATGAGTAA CGGCGCC TAA GGCGCCG TTTTTGTTGGTGTTG TERM 720 642781 - 642765 - T 100 -15.1 -3.2396 | opp_overlap 642765 AAGCATGATGAGTAA CGGCGCC TAA GGCGCCG TTTTTGTTGGTGTTG Shewmr4_0560 643696 - 642806 - | aldo/keto reductase TERM 721 642880 - 642891 + g 87 -7.2 -4.91109 | overlap 642879 642878 GGGTGAGTGACTGTG CGGC CACC GCCG TTTTTATCCTCGCAA Shewmr4_0561 643936 - 645648 + | formate--tetrahydrofolate ligase TERM 722 645673 - 645703 + T 100 -15.6 -4.00526 | opp_overlap 645678, overlap 645678 AGTTTGAATATCATG AAAAAGGCGCAATC TAG GATTGCGCCTTTTG TTTACTTCTCGCCTT TERM 723 645678 - 645698 + T 100 -15.5 -5.02357 | opp_overlap 645678, overlap 645673 GAATATCATGAAAAA GGCGCAATC TAG GATTGCGCC TTTTGTTTACTTCTC TERM 724 645698 - 645678 - T 100 -15.5 -4.8083 | opp_overlap 645678 645673 GAATATCATGAAAAA GGCGCAATC TAG GATTGCGCC TTTTGTTTACTTCTC Shewmr4_0562 647383 - 645728 - | MscS mechanosensitive ion channel TERM 725 647793 - 647807 + G 83 -5.6 -5.14965 | ATACAGTTATTTTGA TGCCTC GAC GCGGCA TTTTTTGATCCCAGT Shewmr4_0563 647605 - 647934 + | hypothetical protein Shewmr4_0564 648140 - 648015 - | hypothetical protein Shewmr4_0565 648397 - 648687 + | hypothetical protein TERM 726 649531 - 649521 - g 79 -6.8 -4.61231 | opp_overlap 649521 649520 TTACACTGGTAAAAA CACC TAT GGTG CTGATTTTGTGTATA TERM 727 649885 - 649869 - g 72 -9.5 -3.41978 | TCAGAAGGGAACTAA CTTCGAT GGA ATCGAAG ACGACAATGTTTTCA Shewmr4_0566 648769 - 649950 + | hypothetical protein Shewmr4_0567 649934 - 650842 + | periplasmic solute binding protein TERM 728 651066 - 651085 + G 71 -5.6 -4.48823 | overlap 651067 651068 TGGATGCCGGCCTTA TTCGCCCT TGCG GGGGCGGG TTTTATCGCTTGGTT Shewmr4_0568 650847 - 651614 + | ABC-3 protein Shewmr4_0569 651771 - 652553 + | 1-acyl-sn-glycerol-3-phosphate acyltransferase Shewmr4_0570 652597 - 653004 + | hypothetical protein TERM 729 653025 - 653055 + T 100 -15.6 -4.2558 | opp_overlap 653026 653032, overlap 653026 653032 GCAATTAAATTAGTA ACAAAAAGCCCATC ATC GATGGGCTTTTTGG TTTTAGTAACCACTA TERM 730 653054 - 653026 - T 100 -19.1 -3.35298 | opp_overlap 653025 653026 653032, overlap 653032 CAATTAAATTAGTAA CAAAAAGCCCATC ATC GATGGGCTTTTTG GTTTTAGTAACCACT TERM 731 653026 - 653054 + T 100 -19.1 -3.15027 | opp_overlap 653026 653032, overlap 653025 653032 CAATTAAATTAGTAA CAAAAAGCCCATC ATC GATGGGCTTTTTG GTTTTAGTAACCACT TERM 732 653032 - 653048 + T 100 -12.3 -5.1166 | opp_overlap 653026 653032, overlap 653026 653025 AATTAGTAACAAAAA GCCCATC ATC GATGGGC TTTTTGGTTTTAGTA TERM 733 653048 - 653032 - T 100 -12.3 -5.16071 | opp_overlap 653032 653026 653025, overlap 653026 AATTAGTAACAAAAA GCCCATC ATC GATGGGC TTTTTGGTTTTAGTA Shewmr4_0571 654032 - 653058 - | diguanylate cyclase Shewmr4_0572 655046 - 654051 - | response regulator receiver protein TERM 734 654578 - 654612 + g 70 -10.7 -3.02144 | gap 1, opp_overlap 654578 654580, overlap 654580 GAAGTTTGGCTAACA GATCGGCGGCG-CGCC CCAT GGCGACGTTGGCGATC TCTTGGCAGGCGTCA TERM 735 655147 - 655165 + H 80 -4.6 -5.13527 | opp_overlap 655147, overlap 655142 GTTTGATTTATAACA TCTATATG TAA CCTATAGA TTTTATTTGTTAATT Shewmr4_0573 655625 - 656431 + | enoyl-CoA hydratase Shewmr4_0574 657509 - 656496 - | hypothetical protein TERM 736 657672 - 657691 + r 100 -15 -3.77489 | opp_overlap 657672 AAGATAAAATAAAAA CGCCCAGC ATTT GCTGGGCG TTTGCATATTCGCTT TERM 737 657691 - 657672 - R 100 -15 -5.60556 | opp_overlap 657672 AAGATAAAATAAAAA CGCCCAGC ATTT GCTGGGCG TTTGCATATTCGCTT TERM 738 657711 - 657726 + r 73 -9 -3.48438 | opp_overlap 657713 CATATTCGCTTAAGC GAGCCT GAGG AGGCTC TTGCTTATCGTCATT Shewmr4_0575 660653 - 657747 - | ATP-dependent helicase HepA TERM 739 658218 - 658232 + g 70 -2.8 -4.86385 | opp_overlap 658212 TTCTAAGAACAGGGT GCCT GCGGGTA AGGC TTTGTTTTTCAAAAT TERM 740 659600 - 659619 + g 70 -4.2 -4.63218 | AGGCTTCGGCGGCAA CGGCGACA TCTT TGTAGCTG TTTTCTTCGGCGAGG TERM 741 660411 - 660422 + g 76 -5.8 -4.68424 | overlap 660410 GATTCCGTGGTAGAC GACG AGGC CGTC TTTTTCGGTGAGTTC TERM 742 661811 - 661799 - g 76 -4.7 -5.02074 | CGAGCGCTTAAAAAA CCTCG AGG CGTGG GGCGTTAAACCTAAG Shewmr4_0576 661056 - 662450 + | PhoH family protein TERM 743 662474 - 662491 + F 91 -7.7 -4.86385 | opp_overlap 662474 TTTATTGTTACAAAA GGTCTCA CTCG TGGGACC TTTGTTTTTACGCAT TERM 744 664970 - 664957 - g 73 -5.2 -4.60487 | opp_overlap 664967 664969 GATTACCTCGAAAAA GCCG GGTTCT CGGC GCAGTCGTTGCTGCG Shewmr4_0577 662671 - 666381 + | multi-sensor hybrid histidine kinase TERM 745 666386 - 666415 + F 93 -9.9 -4.30161 | overlap 666387 666389 ATCATCATTAATTGT TTGCCCGGGGCCA ATGA TGGCCCCGCGTGG TTTAGTTTTGTGTAA TERM 746 666387 - 666414 + F 79 -11.2 -3.17012 | overlap 666386 666389 TCATCATTAATTGTT TGCCCGGGGCCA ATGA TGGCCCCGCGTG GTTTAGTTTTGTGTA TERM 747 666389 - 666412 + F 100 -13.8 -3.12584 | overlap 666387 666386 ATCATTAATTGTTTG CCCGGGGCCA ATGA TGGCCCCGCG TGGTTTAGTTTTGTG TERM 748 666992 - 667015 + G 84 -10.4 -4.08216 | opp_overlap 667014, overlap 666983 TTTAACCCGCTCGGC GATTTTACCC GCCG GGGTGAAATC TTTTGAAAAGAATAG TERM 749 667236 - 667250 + G 73 -5.6 -4.64861 | overlap 667230 ACGCCGTTTTCGGCG CCACTG GTG CAGCGG TTTATTTTGCGCCAC Shewmr4_0578 666465 - 668867 + | hypothetical protein TERM 750 668886 - 668918 + T 100 -12.2 -4.74598 | gap 1, opp_overlap 668886 668883 668888 TGGTTTTCAATATCA TAGGCGC-TAACGAG GGGA TTCGTTATGCGCCTA TTTCTTTTGGGTTTC TERM 751 668918 - 668886 - T 81 -11.5 -2.73875 | gap 1, opp_overlap 668886, overlap 668883 668888 TGGTTTTCAATATCA TAGGCGC-TAACGA GGGGAT TCGTTATGCGCCTA TTTCTTTTGGGTTTC TERM 752 668916 - 668888 - T 73 -9.7 -2.9155 | gap 1, opp_overlap 668886, overlap 668886 668883 GTTTTCAATATCATA GGCGC-TAACGA GGGGAT TCGTTATGCGCC TATTTCTTTTGGGTT Shewmr4_0579 670716 - 668908 - | serine/threonine protein kinase TERM 753 671175 - 671164 - g 74 -2.2 -5.06414 | GCGGTCGAACAAAAA TCCG TCGC CGAA CTGAAGCAGCAGTTG Shewmr4_0580 670966 - 671304 + | hypothetical protein TERM 754 671504 - 671534 + G 75 -10.5 -3.37053 | opp_overlap 671506, overlap 671506 CGTAAAGTATTGGCA AACCTTGGCATTG CCCGC CGATGCCAAGGTC TTCGTTCCCCTGTGT TERM 755 671532 - 671506 - g 77 -10.9 -3.6003 | opp_overlap 671506 671504 TAAAGTATTGGCAAA CCTTGGCATTG CCCGC CGATGCCAAGG TCTTCGTTCCCCTGT TERM 756 671506 - 671532 + G 81 -13.1 -3.25093 | opp_overlap 671506, overlap 671504 TAAAGTATTGGCAAA CCTTGGCATTG CCCGC CGATGCCAAGG TCTTCGTTCCCCTGT Shewmr4_0581 671412 - 672068 + | thiopurine S-methyltransferase TERM 757 672076 - 672122 + T 79 -11.1 -2.90392 | gap 1, overlap 672078 GCAAATAATCGAGTG CATCCCATTGAGTTCA-AAGCA TTTA TGCTTATGGGCTGAGTGGGATG TGTCATTAAGGGGTC TERM 758 672263 - 672251 - T 77 -4.8 -4.96848 | opp_overlap 672251 TGTTTTACAGAAAAA GAGC TGGAG GCTC TAAGTTAAGCGACTT Shewmr4_0582 672459 - 672268 - | BFD/(2Fe-2S)-binding domain-containing protein TERM 759 673248 - 673259 + G 86 -5.8 -5.1356 | TCGCGCTTGCCATTA GTGC TCTG GCAC TTTTTATTGGTGGCA TERM 760 673831 - 673813 - g 73 -8.8 -3.73775 | TTTATTGGCACTAAA CGCCGC GATTGAA GCGGCG CGAGCGGGTGAGCAA Shewmr4_0583 672707 - 674281 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 761 674344 - 674301 - T 73 -5.4 -4.72272 | opp_overlap 674307 674312, overlap 674307 674312 TTGTTGCAGTAAAAA CGAAATCAAAAGGCAATCAG CGTG CTGATTGCCTTTTCTTTTTT CTGATCTTAAGGCAG TERM 762 674338 - 674307 - T 95 -13.2 -3.20111 | opp_overlap 674307 674312, overlap 674301 674312 CAGTAAAAACGAAAT CAAAAGGCAATCAG CGTG CTGATTGCCTTTTC TTTTTTCTGATCTTA TERM 763 674307 - 674338 + T 100 -13.2 -5.36965 | opp_overlap 674307 674301 674312, overlap 674312 CAGTAAAAACGAAAT CAAAAGGCAATCAG CGTG CTGATTGCCTTTTC TTTTTTCTGATCTTA TERM 764 674333 - 674312 - T 100 -13.1 -4.65819 | opp_overlap 674307 674312, overlap 674307 674301 AAAACGAAATCAAAA GGCAATCAG CGTG CTGATTGCC TTTTCTTTTTTCTGA TERM 765 674312 - 674333 + T 100 -13.1 -5.49579 | opp_overlap 674312 674307 674301, overlap 674307 AAAACGAAATCAAAA GGCAATCAG CGTG CTGATTGCC TTTTCTTTTTTCTGA Shewmr4_0584 675301 - 674366 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 766 675620 - 675654 + G 83 -13.7 -3.33434 | gap 1, opp_overlap 675615 675611, overlap 675616 675648 GTTAAAGCTACGCCT TGGG-TGGCAAGGCAA ATCG TTGCCATGCCATCCCA TTGGATGTTTTTGCT TERM 767 675648 - 675661 + G 82 -6.7 -4.78107 | overlap 675620 675616 AAATCGTTGCCATGC CATCC CATT GGATG TTTTTGCTGATCGTC Shewmr4_0585 675392 - 675727 + | hypothetical protein Shewmr4_0586 676473 - 675751 - | glycerophosphoryl diester phosphodiesterase Shewmr4_0587 679692 - 676489 - | MscS mechanosensitive ion channel TERM 768 678162 - 678180 + g 79 -6.6 -4.63932 | AGAAAATCCATCCCG CCGCCACT ATG GGTAGCGG TTTTATTAGGGCATA TERM 769 679166 - 679184 + g 73 -8.8 -3.72576 | overlap 679149 CTGCTGGCAAGCTCA GCCTCGTT AGT GGCGAGGC TTTGCTCGAAGAAAA TERM 770 679461 - 679471 + g 100 -6.8 -5.62288 | CTTCTTTTAAGCCCT GGTC GAT GACC TTTTTGTTTTCTTCA Shewmr4_0588 680645 - 679761 - | hypothetical protein TERM 771 680114 - 680135 + g 73 -5.9 -4.57341 | ACATGGCATGGGGGC CGCTATATT GGGA AAAATAGCG TTTTTGCAGCAGGTT TERM 772 680600 - 680575 - G 86 -8.3 -4.66535 | opp_overlap 680571 AACTTTGAAAACAAA GCTGTGCCG CCAAACAT CAGCACAGC TAAGTGTAATTCGAT Shewmr4_0589 681541 - 680663 - | phosphatidylserine decarboxylase Shewmr4_0590 682689 - 681625 - | ribosome-associated GTPase TERM 773 682700 - 682714 + H 78 -2.1 -5.4251 | CTCACTGATTTGTCT TCGTC AATTA GATGA TTTTTTGTGTCTGAA TERM 774 682777 - 682764 - H 84 -3.8 -5.4505 | CTCTTGAATAAAAAA GCCT GAATTT AGGC TAACTGACATGATAA Shewmr4_0591 682802 - 683347 + | oligoribonuclease Shewmr4_0592 684518 - 684973 + | hypothetical protein TERM 775 684994 - 685018 + F 100 -15.1 -3.81755 | opp_overlap 684998, overlap 684998 TTCAGAATGACCTTT CAAAGCCAGCG TAA TGCTGGCTTTG TTGTCTTTACCGGAT TERM 776 685014 - 684998 - f 76 -9.4 -3.56568 | opp_overlap 684994 684998 GAATGACCTTTCAAA GCCAGC GTAAT GCTGGC TTTGTTGTCTTTACC TERM 777 684998 - 685014 + F 100 -10.1 -4.52143 | opp_overlap 684998, overlap 684994 GAATGACCTTTCAAA GCCAGCG TAA TGCTGGC TTTGTTGTCTTTACC Shewmr4_0593 685218 - 686717 + | carbohydrate kinase, YjeF related protein TERM 778 686729 - 686757 + F 100 -16.1 -3.10164 | opp_overlap 686729, overlap 686734 CTAGGCGCTGTAAAA CTTAAGCGCAGGA CAT TCCCGCGCTTAAG TTGCCTCCTCCATCC TERM 779 686757 - 686729 - f 100 -18.3 -4.08216 | opp_overlap 686729 686734 CTAGGCGCTGTAAAA CTTAAGCGCAGGA CAT TCCCGCGCTTAAG TTGCCTCCTCCATCC TERM 780 686734 - 686752 + F 77 -10.2 -3.19668 | opp_overlap 686729, overlap 686729 CGCTGTAAAACTTAA GCGCAGGA CAT TCCCGCGC TTAAGTTGCCTCCTC Shewmr4_0594 686797 - 687255 + | hypothetical protein Shewmr4_0595 687264 - 688652 + | N-acetylmuramoyl-L-alanine amidase TERM 781 690207 - 690195 - g 70 -4.7 -4.65722 | opp_overlap 690195 690205 TGAGATAGAAACAAA GCTGG CAA CCGGC TTGATAGGTCAGCCA Shewmr4_0596 688666 - 690600 + | DNA mismatch repair protein MutL Shewmr4_0597 690629 - 691519 + | tRNA delta(2)-isopentenylpyrophosphate transferase Shewmr4_0598 691612 - 691884 + | RNA-binding protein Hfq TERM 782 692455 - 692427 - g 76 -5.3 -4.7497 | opp_overlap 692435 692437, overlap 692437 GGGACGCATTAAAAA TATCAACAAACGC TTA GAGCGTGTTGATA AACAACGTGAGCAGA TERM 783 692447 - 692437 - g 74 -6.8 -4.40199 | opp_overlap 692437 692435, overlap 692427 AAAAATATCAACAAA CGCT TAG AGCG TGTTGATAAACAACG TERM 784 692815 - 692787 - g 79 -11.8 -3.31248 | GAACATGGCGGATAA CTTCGAGCAGGT ACAAA ACGTGCTCGAAG ATATCGATGCTGCTG Shewmr4_0599 691909 - 693216 + | GTP-binding protein, HSR1-related TERM 785 693330 - 693340 + G 70 -3.2 -4.81734 | opp_overlap 693319, overlap 693319 CAAAGGACCACCGGA CCTT GAT GAGG TTTTTCGTAATCTTT Shewmr4_0600 693253 - 694398 + | HflK protein Shewmr4_0601 694402 - 695295 + | HflC protein TERM 786 695317 - 695338 + F 100 -12.3 -5.81412 | opp_overlap 695317 AGTTTTGCATTGAAA TGGGTCCTG ATAT CAGGGCCCA TTTTTTTTAGCTGCG TERM 787 695338 - 695317 - f 80 -10.1 -3.64822 | opp_overlap 695317 AGTTTTGCATTGAAA TGGGTCCTG ATAT CAGGGCCCA TTTTTTTTAGCTGCG Shewmr4_0602 695666 - 696256 + | ubiquinol-cytochrome c reductase, iron-sulfur subunit Shewmr4_0603 696256 - 697470 + | cytochrome b/b6 domain-containing protein Shewmr4_0604 697470 - 698168 + | cytochrome c1 TERM 788 698205 - 698233 + F 100 -19.7 -5.34857 | opp_overlap 698210 TAGTATCCGCATAGT GTAAACGGGGGGC TTT GCCCCTCGTTTAC TTTTGTTTTATTTCG TERM 789 698228 - 698210 - f 90 -11.6 -3.63627 | opp_overlap 698205 TCCGCATAGTGTAAA CGGGGGGC TTT GCCCCTCG TTTACTTTTGTTTTA sspA 698265 - 698894 + | stringent starvation protein A Shewmr4_0606 698894 - 699331 + | ClpXP protease specificity-enhancing factor TERM 790 699363 - 699380 + F 100 -11.3 -5.46657 | opp_overlap 699363 TCTATACTATTGAAA GCCAGTC TGCC GACTGGC TTTTTTATTGCCATA TERM 791 699380 - 699363 - f 90 -11.3 -3.70149 | opp_overlap 699363 TCTATACTATTGAAA GCCAGTC TGCC GACTGGC TTTTTTATTGCCATA TERM 792 699891 - 699901 + G 71 -6.8 -4.22009 | TGTTGGTCGATGCTG TCCC TGA GGGA TTTGTGTTAGATGCT Shewmr4_0607 699488 - 700099 + | aminodeoxychorismate synthase, glutamine amidotransferase subunit TERM 793 701168 - 701157 - g 70 -2.2 -4.91712 | overlap 701158 701160 CCTAACCGATAAAAA CTAC ACTG GCAG CAGTGAACACGACAT TERM 794 701541 - 701521 - g 76 -7.6 -4.33417 | gap 1, overlap 701524 GCGACCGATAACAAA GACCGCTGG ATTG CCAGCG-TC GATCTGGCAAAGGGC Shewmr4_0608 700330 - 702810 + | peptidase S9 prolyl oligopeptidase TERM 795 702829 - 702845 + F 100 -12.3 -5.24796 | opp_overlap 702829 702814 TCGTGACAATATGAA GGCCTCA ATA TGAGGCC TTTTTGTTGTGTGGA TERM 796 702845 - 702829 - f 100 -12.3 -3.41745 | opp_overlap 702829, overlap 702814 TCGTGACAATATGAA GGCCTCA ATA TGAGGCC TTTTTGTTGTGTGGA Shewmr4_0609 703010 - 704155 + | putative signal transduction protein TERM 797 704999 - 705013 + G 74 -4.2 -4.83169 | overlap 705000 TAAGGCCTGTGGTGG TGCGGT AGA ATCGCG TTTTTATCACAACAT TERM 798 705026 - 705036 + G 73 -5.4 -4.66953 | opp_overlap 705026 GCGTTTTTATCACAA CATG CCC CATG TTTTTCCCCTGTTCC Shewmr4_0610 704211 - 705122 + | alpha/beta hydrolase domain-containing protein argD 705431 - 706648 + | bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein TERM 799 706658 - 706683 + F 100 -11.3 -5.24129 | gap 1, opp_overlap 706658 GCCTAAGCGACCAAA GGAGTGCTGAAT CTT ATTC-GCACTCC TTTTTTGTCAGGGAA TERM 800 706683 - 706658 - f 95 -11.3 -3.794 | gap 1, opp_overlap 706658 GCCTAAGCGACCAAA GGAGTGCTGAAT CTT ATTC-GCACTCC TTTTTTGTCAGGGAA Shewmr4_0612 706776 - 707795 + | arginine succinyltransferase TERM 801 709057 - 709080 + G 73 -10.2 -3.32844 | ATGATTATGAGTATT TCCTCGCCCG CATT CGTGCGGGGA TTGTGAACTGGAACA Shewmr4_0613 707805 - 709268 + | succinylglutamic semialdehyde dehydrogenase TERM 802 709278 - 709297 + F 100 -10.8 -4.72272 | opp_overlap 709282 GAATGACATCATTGA GGAAGAAC CTAG GTTCTTCC TTTTTCATCACAAGC Shewmr4_0614 709433 - 710236 + | hypothetical protein TERM 803 710269 - 710296 + T 83 -11.4 -3.03771 | opp_overlap 710274, overlap 710274 TGACTCATCTGAAAC AAAAACGCCATC GTTC GATGGCGTTTTC TATTGGCGGCTCTAG TERM 804 710291 - 710274 - T 100 -11.3 -5.28942 | opp_overlap 710274 710269 CATCTGAAACAAAAA CGCCATC GTTC GATGGCG TTTTCTATTGGCGGC TERM 805 710274 - 710291 + T 100 -11.3 -4.66537 | opp_overlap 710274, overlap 710269 CATCTGAAACAAAAA CGCCATC GTTC GATGGCG TTTTCTATTGGCGGC Shewmr4_0615 711695 - 710367 - | periplasmic sensor signal transduction histidine kinase TERM 806 711357 - 711372 + g 70 -9 -3.53091 | overlap 711353 CGGCCCTTTTGCCTG CCAGAC GCGG GTCTGG TTTGGCGCCAAAGGT TERM 807 711479 - 711460 - G 86 -12.1 -3.92542 | TTGAGCTGGAAATAA CGCCCCG AATAGG CGGGGCG GTAGAAGCTCGACAG Shewmr4_0616 712366 - 711692 - | two component transcriptional regulator TERM 808 711743 - 711757 + g 73 -3.4 -5.0133 | overlap 711726 711745 GCGGCGGGTTTCAAT CGCGGT TTT GCCGAG TTTTTTACGCAGGTG Shewmr4_0617 712694 - 712347 - | hypothetical protein TERM 809 712738 - 712715 - R 100 -9 -5.4505 | gap 1, opp_overlap 712715 712714 CTCCCCAATAAAAAA TGGCCTAG-AT TTT ATGCTAGGCCA CTTTAATGAAACAGG Shewmr4_0618 713412 - 712777 - | cAMP-regulatory protein Shewmr4_0619 713835 - 714614 + | Sel1 domain-containing protein TERM 810 714639 - 714669 + T 100 -16.2 -4.94222 | overlap 714642 TGGTAGCTTGTCTTG TTATCAGCCCGAGC CAT GCTCGGGCTGATTG TTTTTATGGATTATT TERM 811 714642 - 714666 + T 100 -20.1 -4.55383 | overlap 714639 TAGCTTGTCTTGTTA TCAGCCCGAGC CAT GCTCGGGCTGA TTGTTTTTATGGATT Shewmr4_0620 715306 - 714734 - | 2'-5' RNA ligase TERM 812 715363 - 715333 - H 78 -9.8 -3.54741 | opp_overlap 715327 715340, overlap 715340 CATCAGCTGCTCAAA TGCCAAACATAAGC TAT GCTTTTGTTTGGTA ATACAGATATTTCTG TERM 813 716790 - 716806 + G 78 -13.7 -2.62184 | overlap 716792 TACACTGTGATGAGT CAGGCCG ATG CGGCCTG TCGTCTCGCGAAGGA Shewmr4_0621 715476 - 717662 + | diguanylate cyclase/phosphodiesterase Shewmr4_0622 717869 - 719875 + | TonB-dependent copper receptor TERM 814 719892 - 719930 + F 76 -6.6 -4.56597 | overlap 719897 TCGGCTTATTTGTAC TATTGGCGCCCCGAGAGT CTT GCTGTCGGGGCGATGCTA TTTTTAGCAAGCCAA TERM 815 719897 - 719925 + F 79 -10.9 -3.01831 | overlap 719892 TTATTTGTACTATTG GCGCCCCGAGAGT CTT GCTGTCGGGGCGA TGCTATTTTTAGCAA Shewmr4_0623 720045 - 722552 + | ATP-dependent helicase HrpB TERM 816 723476 - 723458 - g 71 -6.6 -4.19177 | opp_overlap 723462 ATGGGGCAAGATAAA TCCCGCGC CGT GCATGGGA TGGGGCTGGCTTCAC Shewmr4_0624 722630 - 724924 + | penicillin-binding protein 1B TERM 817 724951 - 724981 + F 79 -8.3 -4.07687 | opp_overlap 724953, overlap 724953 GATAGGTAAAGCGAT AACAGCGGTGC AGCAAAATG GCACCGCTGTC TTTTAAAAAGAGAGT TERM 818 724953 - 724979 + F 84 -10.9 -3.63744 | opp_overlap 724953, overlap 724951 TAGGTAAAGCGATAA CAGCGGTGC AGCAAAATG GCACCGCTG TCTTTTAAAAAGAGA TERM 819 724979 - 724953 - f 83 -10.9 -3.48063 | opp_overlap 724953 724951 TAGGTAAAGCGATAA CAGCGGTGC AGCAAAATG GCACCGCTG TCTTTTAAAAAGAGA Shewmr4_0625 725002 - 725280 + | PpiC-type peptidyl-prolyl cis-trans isomerase Shewmr4_0626 725452 - 725889 + | hypothetical protein TERM 820 725968 - 725921 - f 79 -11.5 -2.52464 | gap 1, opp_overlap 725934 725966, overlap 725930 CTCCCTTCGAATGCA GGGAAAAAATATGGGGCCGCTT GGCGA ATACGGCCC-ATATTCTTCCCC CCCTAAGTATGGGGG TERM 821 725959 - 725930 - f 77 -3.6 -5.10497 | gap 1, opp_overlap 725934, overlap 725921 AATGCAGGGAAAAAA TATGGGGCCGCTT GGCGA ATACGGCCC-ATA TTCTTCCCCCCCTAA Shewmr4_0627 726233 - 726640 + | OsmC family protein Shewmr4_0628 726857 - 727267 + | hypothetical protein Shewmr4_0629 727386 - 727616 + | hypothetical protein TERM 822 727640 - 727672 + T 100 -14.3 -4.08692 | opp_overlap 727647, overlap 727644 ATTGCAGACAGATGA TTTACAAGGGCAAAC TGG GTTTGCCCTTGTTAG TTTTACGAGGGATTA TERM 823 727644 - 727668 + T 100 -17.3 -3.66908 | opp_overlap 727647, overlap 727640 CAGACAGATGATTTA CAAGGGCAAAC TGG GTTTGCCCTTG TTAGTTTTACGAGGG TERM 824 727665 - 727647 - T 100 -13.2 -3.39036 | opp_overlap 727644 727640 ACAGATGATTTACAA GGGCAAAC TGG GTTTGCCC TTGTTAGTTTTACGA Shewmr4_0630 729868 - 727685 - | TonB-dependent receptor TERM 825 729884 - 729898 + H 100 -8.6 -5.4505 | opp_overlap 729886 TAGGTTCTCCGAATC GACAAG GTG CTTGTC TTTTTTCTTGCAAAC Shewmr4_0631 730125 - 730826 + | hypothetical protein Shewmr4_0632 732280 - 730982 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 826 731981 - 732016 + g 71 -6.1 -4.32402 | overlap 731984 CTCTTGACCATTTTT GTGCACGCGAGGGAA TTTACC TTCCTTCGCCTGTCC TTGTTTTAATTCGCG TERM 827 732475 - 732458 - R 89 -6.9 -5.31275 | opp_overlap 732470, overlap 732460 GCTGAGGATAAAAAA GAGCGAC ATGT GTCGCGC TTCAAAGGCGGAATA TERM 828 732473 - 732460 - R 79 -8.1 -4.29153 | opp_overlap 732470, overlap 732458 TGAGGATAAAAAAGA GCGAC ATGT GTCGC GCTTCAAAGGCGGAA Shewmr4_0633 735643 - 732536 - | molydopterin dinucleotide-binding region TERM 829 732676 - 732689 + g 79 -5.3 -4.9218 | CGACGCGGATCAGCG GATTG GCGG CAATC TTTTTATCATCGATG Shewmr4_0634 736800 - 735706 - | polysulphide reductase, NrfD Shewmr4_0635 737545 - 736790 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 830 738657 - 738681 + G 70 -9.9 -3.33399 | opp_overlap 738651 738650 AACATAAAGGATTAT CGGGTGCTCGA TAA TCAGGCGCCCG TTGGGTTTCATTGCC TERM 831 739516 - 739487 - g 73 -5.6 -4.68424 | overlap 739489 CAACCTATTGAAAAA TGCCGCCGATGC CTGTGT GCAGCGTCAGCA GGCTGAGCTTGACCC Shewmr4_0636 737763 - 739811 + | periplasmic sensor signal transduction histidine kinase TERM 832 740280 - 740244 - g 86 -13.9 -3.57144 | CGCGTGAGCGGGAAA TCCTCATTCTTATCGCC AAA GGCTATAAGAATCAGGA GATCGCCGATACGCT Shewmr4_0637 739808 - 740419 + | two component LuxR family transcriptional regulator TERM 833 742787 - 742776 - g 78 -5.8 -4.87626 | overlap 742781 CTCGAAGAGCAAAAA GAGC AGGC GCTC GAAGCGCGGATGGAA TERM 834 743020 - 743008 - g 71 -5.5 -4.55128 | overlap 743009 743011 743012 AGCTTGAAACCAAAA TCAGC CGC GCCGA GCAGCGCCGCAGTGA Shewmr4_0638 740646 - 744317 + | hypothetical protein TERM 835 744493 - 744523 + G 72 -3.8 -4.88388 | overlap 744507 744508 GAATCAAATCAATCG CACCGTGGCTTCGG CCG CCGAGGGCGATGTG TTTTTCTGCGGTTAT Shewmr4_0639 744317 - 744982 + | hypothetical protein Shewmr4_0640 745025 - 746245 + | hypothetical protein Shewmr4_0641 746233 - 747141 + | hypothetical protein Shewmr4_0642 747496 - 748746 + | sodium:dicarboxylate symporter TERM 836 748785 - 748805 + T 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCAC Shewmr4_0643 749585 - 748782 - | integrase catalytic subunit TERM 837 749016 - 748996 - G 79 -11.1 -3.54029 | opp_overlap 748995 748996 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 838 748996 - 749016 + g 71 -11.1 -2.79327 | opp_overlap 748996, overlap 748995 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA Shewmr4_0644 750010 - 749615 - | transposase TERM 839 750083 - 750066 - R 100 -11.3 -5.33848 | opp_overlap 750066 AGCACAACTAAAAAA GCCACTG ATTA CAGTGGC TTTTTTTTATCAGGG TERM 840 750066 - 750083 + r 100 -11.3 -5.93809 | opp_overlap 750066 AGCACAACTAAAAAA GCCACTG ATTA CAGTGGC TTTTTTTTATCAGGG Shewmr4_0645 750581 - 750111 - | hypothetical protein TERM 841 750893 - 750861 - R 95 -8 -5.00616 | gap 1, opp_overlap 750861 750865 750868, overlap 750868 TTTTTGTGCAAAAAA TAAAA-AAGCCACTA CTAT CAGTGGCTTGTTTTA ATCTTTGGCACTCGG TERM 842 750865 - 750888 + r 70 -5.3 -4.49756 | opp_overlap 750861 750868, overlap 750861 750868 TGTGCAAAAAATAAA AAAGCCACT ACTATC AGTGGCTTG TTTTAATCTTTGGCA TERM 843 750885 - 750868 - R 100 -7.7 -6.04324 | opp_overlap 750865 750861 750868, overlap 750861 GCAAAAAATAAAAAA GCCACTA CTAT CAGTGGC TTGTTTTAATCTTTG TERM 844 750868 - 750885 + r 74 -7 -4.34993 | opp_overlap 750868 750861, overlap 750865 750861 GCAAAAAATAAAAAA GCCACT ACTATC AGTGGC TTGTTTTAATCTTTG TERM 845 750958 - 750988 + r 73 -6 -4.42806 | opp_overlap 750958 GCACTCACACTCAAA CAGCAATGCCGCTT ACG GGGCGACGTCGCTG TTTATTTACGAGTCA Shewmr4_0646 751478 - 750990 - | hypothetical protein TERM 846 751658 - 751676 + r 78 -8.8 -3.80841 | overlap 751659 CAAGTGAGTTAGGTT AGTGGGGT TTC ACCCCACA TTTGATAATAGTGCT TERM 847 751659 - 751675 + r 89 -12.3 -2.88023 | overlap 751658 AAGTGAGTTAGGTTA GTGGGGT TTC ACCCCAC ATTTGATAATAGTGC TERM 848 751775 - 751791 + r 70 -9.4 -2.8829 | opp_overlap 751773 751767, overlap 751774 AGGTAAATCAAAGTC GTGGGG CTTCA CCCCAC ATTTGATAATAGTGT TERM 849 751939 - 751920 - R 72 -6.4 -4.27617 | opp_overlap 751920 CACACCCGACCAAAA GGGGAAAA CGCC TGTTCCCC TTTTGGAAATCCCCC TERM 850 752049 - 752018 - R 76 -11 -2.62038 | gap 1, opp_overlap 752048, overlap 752017 752010 752048 TCGAAAATCACTAAC GCTTCCGATGGTACA TCC TGTACC-CCGAAAGC TAGCGAGGCATCCAT TERM 851 752071 - 752052 - R 93 -13.6 -2.64803 | opp_overlap 752048 752068, overlap 752010 752048 GTACCCCGAAAGCTA GCGAGGCA TCCA TGCCTCGC ACACGCGATTTTCTT TERM 852 752068 - 752079 + r 75 -5.8 -4.63218 | opp_overlap 752052 752048, overlap 752048 CGAGGCATCCATGCC TCGC ACAC GCGA TTTTCTTCAACGCCC Shewmr4_0647 752959 - 752186 - | hypothetical protein Shewmr4_0648 754091 - 753102 - | NERD domain-containing protein TERM 853 754336 - 754301 - R 77 -6.2 -4.63218 | gap 1, overlap 754305 GGGCGTTGAAGAAAA TCG-AGTGACGCAGACA GGA TGTCTGCGTAGCTACAA AGATGGGACATGCAT TERM 854 754331 - 754305 - R 70 -9.4 -2.84841 | overlap 754301 GTTGAAGAAAATCGA GTGACGCAGACA GGA TGTCTGCGTAGC TACAAAGATGGGACA TERM 855 754732 - 754716 - R 80 -8.7 -3.96452 | CAATCAAAACTCAAA TGTCGCA TTC CGCGACA ACAAAAAAGCCACTA TERM 856 754741 - 754758 + r 79 -7 -4.60797 | opp_overlap 754741, overlap 754736 CGCGACAACAAAAAA GCCACT ATGGTC AGTGGC TTTTATCTGTAAAAA TERM 857 754758 - 754741 - R 100 -7.7 -5.55769 | opp_overlap 754736 754741 CGCGACAACAAAAAA GCCACTA TGGT CAGTGGC TTTTATCTGTAAAAA Shewmr4_0649 755790 - 754798 - | fructose-1,6-bisphosphatase TERM 858 755444 - 755433 - G 70 -4.4 -4.62984 | GCAGGACAGAGAAAA TGGT GCCG ACCA GCGAGTTGATATCGA TERM 859 757708 - 757697 - g 87 -4.4 -5.46657 | GATGCGAACAAAAAA TACC CTGT GGTA GTACGCGTTTATGGT Shewmr4_0650 756086 - 758377 + | dipeptidyl-peptidase IV TERM 860 758461 - 758440 - T 79 -10.9 -3.08133 | opp_overlap 758440, overlap 758442 CATGCAGTTATCCAA GAGTGAGGC TAAC ACCTCACTC TTTTTTTACACTCGG TERM 861 758440 - 758461 + T 100 -10.2 -5.44119 | opp_overlap 758440 758442 CATGCAGTTATCCAA GAGTGAGG CTAACA CCTCACTC TTTTTTTACACTCGG TERM 862 758711 - 758677 - T 79 -11.1 -2.90763 | gap 1, opp_overlap 758679 758685, overlap 758685 GCCATATTGCAGAGA TAA-AAAAACCAGATC CGAG GATCTGGTTTTTATTA TTCAAACGGACTTCG TERM 863 758679 - 758708 + T 84 -10.9 -3.61517 | opp_overlap 758677 758685, overlap 758685 CATATTGCAGAGATA AAAAAACCAGATC CGAG GATCTGGTTTTTA TTATTCAAACGGACT TERM 864 758685 - 758702 + T 100 -9.9 -5.29445 | opp_overlap 758677 758685, overlap 758679 GCAGAGATAAAAAAA CCAGATC CGAG GATCTGG TTTTTATTATTCAAA TERM 865 758702 - 758685 - T 100 -9.9 -5.76633 | opp_overlap 758685 758679, overlap 758677 GCAGAGATAAAAAAA CCAGATC CGAG GATCTGG TTTTTATTATTCAAA Shewmr4_0651 759447 - 758731 - | two-component response regulator TERM 866 759661 - 759680 + H 85 -2.2 -5.79526 | opp_overlap 759664, overlap 759664 ATAAGCAATAGTTAT AAATAGTT CCTT AACTATTG TTTTTTTTAAAATGT TERM 867 759664 - 759677 + H 73 -3.9 -4.96028 | opp_overlap 759664, overlap 759661 AGCAATAGTTATAAA TAGTT CCTT AACTA TTGTTTTTTTTAAAA TERM 868 759911 - 759942 + H 71 -3.2 -5.01845 | overlap 759926 ATTTACCATGATATT TACTTTAGTTAT TGATTAGT ATAACTAATGTA TTTTTAATTCTTGTG Shewmr4_0652 760034 - 760468 + | hypothetical protein Shewmr4_0653 761028 - 762383 + | aspartate kinase III Shewmr4_0654 762385 - 763500 + | succinylglutamate desuccinylase/aspartoacylase TERM 869 763545 - 763516 - T 100 -12.3 -4.14392 | opp_overlap 763521, overlap 763521 CGGCAATGGGTAAAA CAAAACGCCAATC ATAA GATTGGCGTTTTT TATTCCAGTCTACAA TERM 870 763521 - 763540 + T 100 -12.2 -5.46657 | opp_overlap 763516 763521 ATGGGTAAAACAAAA CGCCAATC ATAA GATTGGCG TTTTTTATTCCAGTC TERM 871 763540 - 763521 - T 100 -12.2 -5.08255 | opp_overlap 763521, overlap 763516 ATGGGTAAAACAAAA CGCCAATC ATAA GATTGGCG TTTTTTATTCCAGTC Shewmr4_0655 764532 - 763555 - | Mg2 transporter protein, CorA family protein Shewmr4_0656 764701 - 765075 + | hypothetical protein TERM 872 765098 - 765129 + T 100 -17.6 -4.67234 | opp_overlap 765101 765105, overlap 765105 CTTTTAATCTCGATA TAACAAAGGCAATC TATT GATTGCCTTTGTTA TTTTTAACCTTGCGT TERM 873 765126 - 765101 - T 100 -14.9 -3.50447 | opp_overlap 765098 765105, overlap 765105 TTAATCTCGATATAA CAAAGGCAATC TATT GATTGCCTTTG TTATTTTTAACCTTG TERM 874 765105 - 765122 + T 100 -9.9 -4.76802 | opp_overlap 765101 765105, overlap 765098 TCTCGATATAACAAA GGCAATC TATT GATTGCC TTTGTTATTTTTAAC TERM 875 765122 - 765105 - T 93 -9.9 -4.38927 | opp_overlap 765105 765098, overlap 765101 TCTCGATATAACAAA GGCAATC TATT GATTGCC TTTGTTATTTTTAAC Shewmr4_0657 765794 - 765165 - | two component LuxR family transcriptional regulator Shewmr4_0658 767583 - 765787 - | nitrate/nitrite sensor protein NarQ TERM 876 767665 - 767651 - H 73 -5.8 -4.50976 | opp_overlap 767639 TTTTACATTAGAAAA TAATGT ATT ACATTA ACAAAAACATAAAAG nrfA 767809 - 769230 + | cytochrome c nitrite reductase TERM 877 769266 - 769291 + T 100 -14.7 -5.8187 | opp_overlap 769266 ACCCCTCATAGCAAA GCCCCCGCAAC TTAG GTTACGGGGGC TTTTTTTATTGCCTA TERM 878 769291 - 769266 - T 100 -16.9 -3.83205 | opp_overlap 769266 ACCCCTCATAGCAAA GCCCCCGCAAC TTAG GTTACGGGGGC TTTTTTTATTGCCTA Shewmr4_0660 771315 - 769381 - | diguanylate cyclase/phosphodiesterase with GAF sensor TERM 879 770222 - 770232 + g 87 -8.2 -4.82901 | overlap 770220 TTGCTGATGGTCATG GCGG CGC CCGC TTTTTGTAGCAAAAC TERM 880 770342 - 770314 - G 80 -9.7 -3.97947 | gap 1, opp_overlap 770310 770309 770314 770315, overlap 770315 CGTAGTGATCACAAA GTCTGCAATGCC AAAGGG GGCATTGCAG-C AGTTGATTATCTGAT TERM 881 771680 - 771696 + G 80 -12.3 -3.37344 | GGTGGTGTCGATTCT TGGCCAC TGC GTGGCCA TTGGTTGACTGAGAA TERM 882 772128 - 772138 + G 76 -6.8 -4.58663 | overlap 772107 TTGCGCAGGAGCTGC GTGG TGC CCAC TTTTTGAGCCATGAT Shewmr4_0661 771521 - 772291 + | hypothetical protein TERM 883 772295 - 772277 - T 83 -8.8 -4.09455 | opp_overlap 772277 ATCAATACTAAAGAA GCCATCTC TAA GTGATGGC TTATTCCTCAAGTCA TERM 884 772277 - 772295 + T 75 -8.8 -3.7282 | opp_overlap 772277 ATCAATACTAAAGAA GCCATCTC TAA GTGATGGC TTATTCCTCAAGTCA Shewmr4_0662 772892 - 772344 - | hypothetical protein Shewmr4_0663 773093 - 773434 + | hypothetical protein Shewmr4_0664 773705 - 774562 + | protein of unknown function RIO1 TERM 885 774585 - 774601 + T 87 -5.1 -5.4756 | opp_overlap 774583 774585, overlap 774573 774571 TTCTTCAATAAAATA GACGC CTTATGA GCGTC TTTTTTATTGGGATT Shewmr4_0665 775524 - 775291 - | transposase IS3/IS911 family protein TERM 886 775930 - 775963 + H 72 -6.1 -4.36262 | gap 1, opp_overlap 775902 775938 775939, overlap 775932 775940 ACTTTTTAAAGCCAT GT-CTGAAACGGTGCA GCT TGCACTATTTCAGTGC TTTTACTCTAAATGT TERM 887 775932 - 775960 + H 79 -11.1 -3.16202 | opp_overlap 775902 775938 775939, overlap 775930 775940 TTTTTAAAGCCATGT CTGAAACGGTGCA GCT TGCACTATTTCAG TGCTTTTACTCTAAA Shewmr4_0666 776180 - 776872 + | OmpA/MotB domain-containing protein TERM 888 776909 - 776884 - f 72 -6.1 -4.40572 | opp_overlap 776889, overlap 776887 776889 ATAATTTCCATAAAA TAAGAGTCGCC TACG GGCGACTTTTT ACTCTCTGCACTCGG TERM 889 776906 - 776887 - f 79 -7.8 -4.31397 | opp_overlap 776889, overlap 776884 776889 ATTTCCATAAAATAA GAGTCGCC TACG GGCGACTT TTTACTCTCTGCACT TERM 890 776889 - 776904 + F 100 -10.4 -4.84527 | opp_overlap 776887 776884 776889 TTCCATAAAATAAGA GTCGCC TACG GGCGAC TTTTTACTCTCTGCA TERM 891 776904 - 776889 - f 86 -10.4 -3.75581 | opp_overlap 776889, overlap 776887 776884 TTCCATAAAATAAGA GTCGCC TACG GGCGAC TTTTTACTCTCTGCA Shewmr4_0667 777112 - 777939 + | hypothetical protein TERM 892 778222 - 778251 + T 100 -15.9 -3.965 | opp_overlap 778228, overlap 778228 TATTAAACGACCTAT TAAAAATGGCGCC CTAT GGCGCCATTTTTG TTGTTCGTTTTAGCC TERM 893 778245 - 778228 - T 100 -12.7 -4.75372 | opp_overlap 778228 778222 ACGACCTATTAAAAA TGGCGCC CTAT GGCGCCA TTTTTGTTGTTCGTT TERM 894 778228 - 778245 + T 100 -12.7 -5.3321 | opp_overlap 778228, overlap 778222 ACGACCTATTAAAAA TGGCGCC CTAT GGCGCCA TTTTTGTTGTTCGTT Shewmr4_0668 779640 - 778276 - | magnesium transporter Shewmr4_0669 780127 - 779852 - | HPr family phosphocarrier protein Shewmr4_0670 780968 - 780114 - | hypothetical protein Shewmr4_0671 781408 - 780965 - | PTS IIA-like nitrogen-regulatory protein PtsN Shewmr4_0672 781698 - 781411 - | sigma 54 modulation protein / SSU ribosomal protein S30P Shewmr4_0673 783202 - 781727 - | RNA polymerase factor sigma-54 Shewmr4_0674 784040 - 783309 - | ABC transporter related TERM 895 783884 - 783907 + g 86 -11 -4.07687 | opp_overlap 783883 783884 783900, overlap 783900 CGCTTTTCACTAAAC CCACGACCAT GTAA AAGGTCGTGG TTTTACCCGCACCGT TERM 896 783907 - 783884 - G 71 -11 -2.83403 | opp_overlap 783884 783900, overlap 783883 783900 CGCTTTTCACTAAAC CCACGACCAT GTAA AAGGTCGTGG TTTTACCCGCACCGT Shewmr4_0675 784588 - 784037 - | OstA family protein Shewmr4_0676 785135 - 784575 - | hypothetical protein Shewmr4_0677 785683 - 785132 - | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase Shewmr4_0678 786660 - 785683 - | KpsF/GutQ family protein TERM 897 787938 - 787919 - g 70 -8.6 -3.68351 | gap 1, overlap 787922 GCCTGAGGAGCTAAA GCATGCGGA TAA TCCGCA-GC TCAAACAGTTTATTC Shewmr4_0679 787221 - 788039 + | ABC transporter related Shewmr4_0680 788036 - 788821 + | hypothetical protein Shewmr4_0681 788876 - 789349 + | hypothetical protein TERM 898 789741 - 789727 - g 70 -2.1 -4.91873 | gap 1, overlap 789728 789729 TACACTAACCAAAAA GTGGAG TTTT CTCC-C GGTAGTGATTTCAGC Shewmr4_0682 789361 - 790014 + | toluene tolerance family protein Shewmr4_0683 790020 - 790304 + | SpoIIAA family protein Shewmr4_0684 790321 - 790572 + | BolA family protein TERM 899 791032 - 791056 + G 70 -2.7 -4.84359 | overlap 791025 791034 ATCAAGGCCCGTGTC GATGGTCGCTT AAA GGGCGCCCATA TTTTTATGGACATGG Shewmr4_0685 790585 - 791844 + | UDP-N-acetylglucosamine 1-carboxyvinyltransferase TERM 900 791859 - 791907 + T 100 -17 -4.46112 | opp_overlap 791876, overlap 791861 791876 ACATTTGCTTAGGAT TCGCTTCCAATAAAAAACCAGC TAAGT GCTGGTTTTTTATTGGGTGCAA TTTGTTTAGGTAAAA TERM 901 791861 - 791905 + T 100 -19.6 -2.55829 | opp_overlap 791876, overlap 791859 791876 ATTTGCTTAGGATTC GCTTCCAATAAAAAACCAGC TAAGT GCTGGTTTTTTATTGGGTGC AATTTGTTTAGGTAA TERM 902 791876 - 791890 + T 95 -7.1 -5.4833 | opp_overlap 791876, overlap 791861 791859 GCTTCCAATAAAAAA CCAGC TAAGT GCTGG TTTTTTATTGGGTGC TERM 903 791890 - 791876 - T 95 -7.1 -5.4505 | opp_overlap 791861 791859 791876 GCTTCCAATAAAAAA CCAGC TAAGT GCTGG TTTTTTATTGGGTGC Shewmr4_0686 793810 - 793478 - | hypothetical protein Shewmr4_0687 795217 - 794156 - | 16S rRNA m(2)G 1207 methyltransferase TERM 904 794433 - 794482 + g 73 -12 -2.5655 | overlap 794432 GGATAGACCTTGGCC GTCATGCCGTTTGCCGCCAGCG TAAGTT CGCAGGAGGCCAGCGCCATGGC ATTGATATCAATACA TERM 905 795344 - 795321 - R 100 -11 -5.52096 | opp_overlap 795321 AAAGCCAATAAAAAA GGCAACTGTG TTAA CACTGTTGCC TTTCATCTATTAGCT TERM 906 795321 - 795344 + r 90 -11 -3.93664 | opp_overlap 795321 AAAGCCAATAAAAAA GGCAACTGTG TTAA CACTGTTGCC TTTCATCTATTAGCT Shewmr4_0688 796784 - 795372 - | alkaline phosphatase TERM 907 796062 - 796082 + g 74 -4.7 -4.7497 | GGCTTTTTGAGTCAA GGTGCTGAG TTT TTTAGCATC TTTTTCATCAATCGC TERM 908 796806 - 796822 + r 84 -11.5 -3.08642 | opp_overlap 796801 796800 TCCCTAGAAGTCGTA GGCGCTC TGT GGGCGCC TTCAATGAATAATAT Shewmr4_0689 797805 - 796858 - | glutathione synthetase TERM 909 797871 - 797897 + r 73 -8.6 -3.66666 | opp_overlap 797869, overlap 797876 AGCCAGTAATCGATT CGCCAGCCAGTG TGT TACCCGCTGGCG TTTAACCATTTTAGA Shewmr4_0690 798645 - 797914 - | hypothetical protein Shewmr4_0691 799427 - 798654 - | deoxyribonuclease I TERM 910 799458 - 799472 + r 84 -11.4 -3.17146 | overlap 799457 799454 GTAATCTGTACTACG CGAGCC TGT GGCTCG TCTCTTATACCCGAA Shewmr4_0692 800162 - 799557 - | hypothetical protein Shewmr4_0693 801500 - 800343 - | hypothetical protein TERM 911 801124 - 801103 - G 71 -6.6 -4.13014 | gap 1 TGGATATCGCTAAAA CCG-CGAGA TGCCT TCTCGACGG CGCTGGCTAAAATAT TERM 912 801722 - 801741 + H 70 -5.6 -4.40561 | opp_overlap 801722 801723, overlap 801719 801723 TTGAGTGGCGAGAAA CGCGGGCA TAAG TGCCTGCC TTATTTTTGCCACAA TERM 913 801723 - 801740 + H 71 -9.1 -3.23855 | opp_overlap 801723 801722, overlap 801722 801719 TGAGTGGCGAGAAAC GCGGGCA TAAG TGCCTGC CTTATTTTTGCCACA Shewmr4_0694 801850 - 802647 + | Beta-lactamase TERM 914 802834 - 802865 + T 100 -12.5 -3.52102 | opp_overlap 802840, overlap 802840 CCTTATTCCTAAACG CAAAAAGCCTAGT CAATTC GCTAGGCTTTTTG TTATCTCAATGGCAT TERM 915 802840 - 802859 + T 85 -5.7 -5.24796 | opp_overlap 802840, overlap 802834 TCCTAAACGCAAAAA GCCTAGT CAATTC GCTAGGC TTTTTGTTATCTCAA TERM 916 802859 - 802840 - T 74 -5 -4.81249 | gap 1, opp_overlap 802840 802834 TCCTAAACGCAAAAA GCCTAGTCA ATT CG-CTAGGC TTTTTGTTATCTCAA Shewmr4_0695 803865 - 802954 - | LysR family transcriptional regulator TERM 917 804778 - 804793 + G 71 -7.6 -4.10164 | opp_overlap 804759 ACACCGCGGGTTGTA TCGATG GCAT CATCGA TTTCTCTCCTGGTGA TERM 918 805341 - 805329 - g 80 -2.6 -5.39755 | opp_overlap 805339 GAGAACTACAAAAAA GCAC GTAAG GCGC TGTTATTTAACATCG Shewmr4_0696 803988 - 808541 + | carbamoyl-phosphate synthase L chain, ATP-binding TERM 919 808589 - 808570 - f 100 -13.6 -3.6608 | opp_overlap 808570 ATGAGTGCATCGAAA TACCCGCC AGTT GGCGGGTA TTTTTTTATCCGATT TERM 920 808570 - 808589 + F 100 -13.6 -5.63504 | opp_overlap 808570 ATGAGTGCATCGAAA TACCCGCC AGTT GGCGGGTA TTTTTTTATCCGATT Shewmr4_0697 808736 - 810184 + | diguanylate cyclase TERM 921 810167 - 810179 + F 70 -7.7 -3.62275 | GATCAGATTTGTGTC GGTGA AAC TCACC TTTAAAGTGGTAAAT Shewmr4_0698 810634 - 812727 + | elongation factor G TERM 922 812751 - 812777 + T 100 -13.1 -5.64274 | gap 1, opp_overlap 812751 TTTACCAAATAGAAA CCGCTGCTAAGC CTAG GCT-AGCAGCGG TTTTTTTATGAGTGA TERM 923 812777 - 812751 - T 100 -13.1 -4.36903 | gap 1, opp_overlap 812751 TTTACCAAATAGAAA CCGCTGCTAAGC CTAG GCT-AGCAGCGG TTTTTTTATGAGTGA Shewmr4_0699 813743 - 812856 - | LysR family transcriptional regulator Shewmr4_0700 813838 - 813990 + | hypothetical protein TERM 924 814009 - 813970 - T 79 -6.7 -4.61873 | gap 2, opp_overlap 813981, overlap 813981 TTGCATAAAGCAAAA CAACAAGT-AAA-CCCAGC CTAG GCTGGGTTTTTACTTTTTG GTACTTGAGTATTTT TERM 925 813996 - 813981 - T 91 -10.4 -4.18711 | opp_overlap 813981, overlap 813970 AAAACAACAAGTAAA CCCAGC CTAG GCTGGG TTTTTACTTTTTGGT TERM 926 813981 - 813996 + T 100 -10.4 -5.1971 | opp_overlap 813981 813970 AAAACAACAAGTAAA CCCAGC CTAG GCTGGG TTTTTACTTTTTGGT TERM 927 814191 - 814172 - T 100 -9.3 -4.8048 | opp_overlap 814172 TGCGGAGAGTAAAAA GCCACTG GGTTGG CAGTGGC TTTTGGGGGCAGGGA TERM 928 814172 - 814191 + T 83 -9.3 -4.07568 | opp_overlap 814172 TGCGGAGAGTAAAAA GCCACTG GGTTGG CAGTGGC TTTTGGGGGCAGGGA Shewmr4_0701 814647 - 814216 - | periplasmic nitrate reductase subunit NapB napH 815642 - 814644 - | quinol dehydrogenase membrane component napG 816373 - 815639 - | quinol dehydrogenase periplasmic component Shewmr4_0704 818905 - 816425 - | nitrate reductase TERM 929 816558 - 816542 - G 78 -10.1 -3.95051 | opp_overlap 816542 816549, overlap 816534 GAAGAAGGGCATAAA CACCACG CCG CGTGGCG GTTTGTTACGACCTT TERM 930 816549 - 816559 + g 76 -8.2 -4.17132 | opp_overlap 816534 816542, overlap 816542 GGCATAAACACCACG CCGC GTG GCGG TTTGTTACGACCTTT TERM 931 817010 - 817030 + g 78 -6.1 -4.87665 | overlap 816995 816999 GCCGCGACCGAAGGC GGCGTATTC TTC GAAAATGCC TTTTTGTAGATAGAA Shewmr4_0705 819186 - 818902 - | NapD family protein TERM 932 819298 - 819280 - R 70 -3.9 -4.8667 | gap 1, opp_overlap 819291 TAGACCTGATAAAAA TTGTG-GG TATA CCTCACAA GAGGTATTGGCGGGG TERM 933 819395 - 819374 - R 80 -8.7 -4.05026 | TTGAAATTTAAACAA TCCCTATCC CTTT GGAGAGGGA GTCGGCGGGTGACTT Shewmr4_0706 821052 - 819427 - | hypothetical protein Shewmr4_0707 821610 - 821068 - | prepilin-type cleavage/methylation-like protein Shewmr4_0708 822011 - 821613 - | prepilin-type cleavage/methylation-like protein Shewmr4_0709 822445 - 822011 - | methylation site containing protein Shewmr4_0710 822818 - 822447 - | methylation site containing protein Shewmr4_0711 824285 - 823035 - | hypothetical protein Shewmr4_0712 826951 - 824282 - | hypothetical protein TERM 934 824798 - 824812 + g 74 -10 -3.61178 | TTGCAGGTCATCGAG CTCAGC CTC GCTGAG TTTGAGGTGAGTCGC TERM 935 825090 - 825111 + g 76 -6.5 -4.48299 | opp_overlap 825089, overlap 825103 CGCCCTTCAAAGTAG GTTTGCCAG AGAT CCGGCAAGC TTTGTTTGAGTGTGC Shewmr4_0713 827627 - 826956 - | ABC transporter related TERM 936 827847 - 827880 + H 86 -12.7 -2.53876 | opp_overlap 827855, overlap 827855 TGCATGCTGTGCGAC CTGTTAAATCGATAG CGGA CTATCGATTTAACAA TCCGTTCGGATGAAG TERM 937 827855 - 827872 + H 73 -8.5 -3.58269 | opp_overlap 827855, overlap 827847 GTGCGACCTGTTAAA TCGATAG CGGA CTATCGA TTTAACAATCCGTTC TERM 938 827872 - 827855 - H 71 -8.5 -3.55444 | opp_overlap 827855 827847 GTGCGACCTGTTAAA TCGATAG CGGA CTATCGA TTTAACAATCCGTTC TERM 939 828160 - 828195 + H 70 -5.3 -4.44046 | overlap 828152 GTCGTTTGTCTTTTG GACTCTTTCCCTGCC TTTATT GGCTGGGTGATAGTC TTTCTTTAGGCTGGC Shewmr4_0714 828281 - 829639 + | amino acid carrier protein Shewmr4_0715 829768 - 835071 + | multi-sensor hybrid histidine kinase Shewmr4_0716 835137 - 836153 + | response regulator receiver modulated metal dependent phosphohydrolase TERM 940 836182 - 836158 - T 100 -12.9 -5.27779 | opp_overlap 836163, overlap 836163 TCGAACATTAAAAAA GAAAAGGCGCC TAA GGCGCCTTTTT TAACTCAAACTCTTA TERM 941 836163 - 836177 + T 100 -12.8 -5.08824 | opp_overlap 836158 836163 CATTAAAAAAGAAAA GGCGCC TAA GGCGCC TTTTTTAACTCAAAC TERM 942 836177 - 836163 - T 100 -12.8 -5.45813 | opp_overlap 836163, overlap 836158 CATTAAAAAAGAAAA GGCGCC TAA GGCGCC TTTTTTAACTCAAAC Shewmr4_0717 837173 - 836217 - | glycine cleavage T protein (aminomethyl transferase) TERM 943 837283 - 837242 - R 93 -11 -4.08064 | opp_overlap 837248, overlap 837245 837248 AAGCGGCGCTCAAAA GCATAAGGCGCACATATC TTGAAT GAAATGTGCGCCTTATAA ATACACTCAAGCTGA TERM 944 837280 - 837245 - R 100 -14.9 -3.08032 | opp_overlap 837248, overlap 837242 837248 CGGCGCTCAAAAGCA TAAGGCGCACATATC TTGAAT GAAATGTGCGCCTTA TAAATACACTCAAGC TERM 945 837277 - 837248 - R 93 -12.2 -3.68359 | opp_overlap 837248, overlap 837245 837242 CGCTCAAAAGCATAA GGCGCACATATC TTGAAT GAAATGTGCGCC TTATAAATACACTCA TERM 946 837248 - 837277 + r 89 -12.2 -3.36327 | opp_overlap 837248 837245 837242 CGCTCAAAAGCATAA GGCGCACATATC TTGAAT GAAATGTGCGCC TTATAAATACACTCA TERM 947 837301 - 837287 - R 71 -8.6 -3.51934 | overlap 837285 TGCGCCTTATAAATA CACTCA AGC TGAGTG CGAAAAGCCTTAGAA Shewmr4_0718 838540 - 837311 - | D-3-phosphoglycerate dehydrogenase Shewmr4_0719 838696 - 839304 + | hypothetical protein TERM 948 839326 - 839352 + F 91 -6.6 -5.5112 | opp_overlap 839326, overlap 839328 ACCCTTATCGATAAA TGCCCTCGAA GCTTCCA TTCGAGGGGA TTTTTTATTCCTCAA TERM 949 839328 - 839350 + F 71 -9.2 -2.92668 | opp_overlap 839326, overlap 839326 CCTTATCGATAAATG CCCTCGAA GCTTCCA TTCGAGGG GATTTTTTATTCCTC Shewmr4_0720 839672 - 840337 + | LuxR family transcriptional regulator TERM 950 840456 - 840478 + T 100 -16.4 -5.06414 | opp_overlap 840456 ATACGCAAATAAAAA CGGGAACATG ATT CATGTTCCCG TTTTTATTGGGCCGC TERM 951 840478 - 840456 - T 100 -16.4 -5.31519 | opp_overlap 840456 ATACGCAAATAAAAA CGGGAACATG ATT CATGTTCCCG TTTTTATTGGGCCGC Shewmr4_0721 842029 - 840521 - | curlin-associated protein Shewmr4_0722 842463 - 842044 - | curlin-associated protein TERM 952 842606 - 842625 + H 70 -9.4 -2.81312 | ATAGCCAGCTAGGTA GGATTAAC TTTT GTTAATCC TATGATAAATCAGTT TERM 953 843282 - 843272 - g 74 -6.8 -4.42619 | TAACACGGGACAAAA CGGT GGC ACCG TCGATGCGGATATCG Shewmr4_0723 842865 - 845372 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 954 845409 - 845392 - T 100 -12.7 -3.93401 | opp_overlap 845392, overlap 845385 GCCATAAATTAACAA GGCGACC CTAG GGTCGCC TTTTTTGTTCTCTAG TERM 955 845392 - 845409 + T 100 -12.7 -5.60689 | opp_overlap 845392 845385 GCCATAAATTAACAA GGCGACC CTAG GGTCGCC TTTTTTGTTCTCTAG Shewmr4_0724 845955 - 845434 - | hypothetical protein TERM 956 846210 - 846223 + r 95 -8.1 -4.94902 | opp_overlap 846210 CGCACAAACAAAAAA GGAGC CTAA GCTCC TTTTTCTCATGCTTA TERM 957 846223 - 846210 - R 100 -8.1 -5.72622 | opp_overlap 846210 CGCACAAACAAAAAA GGAGC CTAA GCTCC TTTTTCTCATGCTTA Shewmr4_0725 847090 - 846245 - | pantothenate synthetase TERM 958 846456 - 846472 + g 86 -6.5 -5.00616 | overlap 846444 TGTTTGATGCCTTGC GCCATAG CAT CGATGGC TTTTTTCAACGCCGG TERM 959 846483 - 846496 + g 83 -5.2 -5.17744 | overlap 846482 846481 ATGGCTTTTTTCAAC GCCG GCGCGG CGGC TTTTTCTTCCTCTGT Shewmr4_0726 847936 - 847142 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase Shewmr4_0727 848481 - 847993 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Shewmr4_0728 849788 - 848481 - | poly(A) polymerase Shewmr4_0729 850970 - 850071 - | glutamyl-tRNA synthetase, class Ic TERM 960 850211 - 850245 + g 70 -2.1 -4.90778 | gap 1, overlap 850211 850213 CAGCATTGAGACTCG CC-TGCGGATGCTGTT TATC GATAGCCTGCGCATGG TTTTGTTTCGATAGC TERM 961 850582 - 850599 + g 70 -11.3 -2.52676 | opp_overlap 850585 TGCGGTGTGGCTAAC CGATGGC AGCG GCCATCG TAAATTCCGCCCATG TERM 962 851092 - 851075 - R 100 -14.1 -3.07135 | opp_overlap 851075, overlap 851072 GCGCATAAACAAGTA GGCGGGG AAAT CCCCGCC CGAAGATGGCCGATT Shewmr4_0730 851549 - 851106 - | TraR/DksA family transcriptional regulator TERM 963 851218 - 851245 + g 74 -4.1 -5.03747 | opp_overlap 851218, overlap 851239 851240 TCGATACCGCAAGAA TCGCAGAAGCC AAAATC GTCTTCTTCGA TTTTTTGAAGGGTTT Shewmr4_0731 852417 - 851713 - | sugar fermentation stimulation protein TERM 964 852208 - 852189 - G 72 -10 -3.34005 | gap 1, opp_overlap 852199 AATGAATGCCGATAA GGCCAC-CC GTT GGCGTGGCC ATTAACTCCCATGTG TERM 965 852523 - 852499 - H 70 -9.9 -2.55213 | TACCTAGGTAACTTA GGCCGATGGCT TTC AGTCCTCGGCC GCTGGCAGTAAACTG TERM 966 852651 - 852635 - H 70 -7.3 -3.76065 | GCAAGAACAAATCAA CATAAGG ACC CCTCATG AGTGAACTTAAAGTG Shewmr4_0732 852649 - 853941 + | aminopeptidase B TERM 967 853961 - 853978 + F 76 -2.5 -5.37593 | GCCTTTGCGACTGCA GCTCGCC AGTC GGCTCGC TTTTTTGATTTAAAA TERM 968 854007 - 853994 - f 85 -9.5 -4.18018 | opp_overlap 853994 TTTTTTGATTTAAAA CCGCC TTCG GGCGG TTTTTTATTGCCTAA TERM 969 853994 - 854007 + F 100 -9.5 -5.4833 | opp_overlap 853994 TTTTTTGATTTAAAA CCGCC TTCG GGCGG TTTTTTATTGCCTAA Shewmr4_0733 854120 - 854629 + | GCN5-related N-acetyltransferase TERM 970 854714 - 854747 + T 71 -6.9 -4.12599 | gap 1, opp_overlap 854709 854714, overlap 854717 AGGTAACCAACAGAT CAAGCATT-GAAGTGG GAT TCACTTCTAATACTTG TTTTGAAGGGTTGTT TERM 971 855151 - 855133 - T 75 -6 -4.58395 | TCTATTGCTCAAAAA GGCTTTAT TTG ATTAAGCC ACATCTTAACTCTAT Shewmr4_0734 856055 - 855168 - | phosphoribulokinase TERM 972 856126 - 856106 - R 77 -8.4 -3.92075 | ATTTGGAGCGATAAA CCGTATAA GCTAT TTATACGG CACAGGGATACTGGT Shewmr4_0735 856389 - 856144 - | hypothetical protein Shewmr4_0736 857382 - 856399 - | alpha/beta hydrolase fold Shewmr4_0737 857494 - 858000 + | hypothetical protein Shewmr4_0738 858047 - 859648 + | glucose-methanol-choline oxidoreductase Shewmr4_0739 859661 - 860071 + | glutathione-dependent formaldehyde-activating, GFA Shewmr4_0740 860549 - 860088 - | hypothetical protein TERM 973 860594 - 860578 - R 72 -10.1 -2.89683 | ACGTTAGGCGATAGA GGGCCAA TTA CTGGCCC ATCAGCTCAAGTTCC Shewmr4_0741 862498 - 860585 - | ABC transporter related TERM 974 861214 - 861186 - G 75 -8.8 -3.9344 | AAGGCCAACACTAAA CGCGCTTTCTCG CCACC CGAGAAGGGGCG TACCGGCGAGAGCGC TERM 975 862992 - 862979 - g 72 -3.8 -4.86731 | GCTGTTTAAAGAAAA CGGT ATCGAA ACCG TAGAATGCACCGACT Shewmr4_0742 862890 - 863090 + | hypothetical protein TERM 976 863920 - 863940 + G 72 -8.3 -3.89336 | opp_overlap 863935, overlap 863914 863935 863936 ATTGAGCTTATTGAG CTTGGGTTC TAT GAACCAAAG TTTGACTTTGATTCA TERM 977 864031 - 863995 - g 80 -9.5 -3.98291 | overlap 864005 AACAAGTGCAAAGAA CGCCAGAAAACTTTACT GAA AGAGAAGTCTTCTAGCG GAGCGATATATTGTT Shewmr4_0743 863497 - 865026 + | chromosome segregation ATPase Shewmr4_0744 865609 - 866466 + | pirin domain-containing protein TERM 978 866567 - 866550 - f 93 -12.7 -3.2056 | opp_overlap 866550 AGTCACACCCACTAA GCCCTGC CAAC GCAGGGC TTTTTGTTAGCGCGC TERM 979 866550 - 866567 + F 100 -12.7 -5.06414 | opp_overlap 866550 AGTCACACCCACTAA GCCCTGC CAAC GCAGGGC TTTTTGTTAGCGCGC TERM 980 866624 - 866607 - f 73 -8.4 -3.65693 | opp_overlap 866607 ATCAGAGACTTCAAA GCAGGC AATTAA GCCTGC TTGGGTAGTTAAGCG TERM 981 868180 - 868168 - g 70 -4.7 -4.64992 | GGTAAAAAAGAGAAA CTCCG CCC CGGTG ATATCCTCGGCGCCC Shewmr4_0745 866983 - 868359 + | ATP-dependent RNA helicase DbpA TERM 982 868401 - 868382 - T 100 -13.6 -4.77157 | opp_overlap 868382 TTAAGTGATTAAAAA GCGAAGCC AAAT GGCTTCGC TTTTTGTTTTACAGC TERM 983 868382 - 868401 + T 100 -13.6 -5.45802 | opp_overlap 868382 TTAAGTGATTAAAAA GCGAAGCC AAAT GGCTTCGC TTTTTGTTTTACAGC Shewmr4_0746 868949 - 868527 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 984 868798 - 868827 + g 70 -8.5 -3.71552 | gap 1 AAGGCGGTACCACTG GAGTTGGG-CGGGG CTA CCACGACCCAACGC TTATCTTGCTCGGGT TERM 985 868932 - 868891 - G 73 -3.2 -4.96848 | gap 2, opp_overlap 868924, overlap 868895 TTCTTGACATAAAAA TCA-ATCGC-CTCATCGTAA TCTC TTACGACAAGTGCGATATGG ACAATCGCCTGTTTC TERM 986 868927 - 868895 - G 72 -8.6 -3.91281 | gap 1, opp_overlap 868924, overlap 868891 TGACATAAAAATCAA TCGC-CTCATCGTAA TCTC TTACGACAAGTGCGA TATGGACAATCGCCT Shewmr4_0747 870112 - 869072 - | aldo/keto reductase Shewmr4_0748 870578 - 871948 + | Na(+)-translocating NADH-quinone reductase subunit A TERM 987 871981 - 871969 - g 80 -4.8 -5.20154 | opp_overlap 871978 ACACAACCTAAAAAA CCTG ATTTA CAGG ACGCCCCTGATTTGC TERM 988 872121 - 872134 + G 70 -4.5 -4.67607 | CGTAAAACGTACCAT GACCT TAGT GGGTC TTTGTTTATTACCCG Shewmr4_0749 871948 - 873180 + | Na(+)-translocating NADH-quinone reductase subunit B Shewmr4_0750 873170 - 873964 + | Na(+)-translocating NADH-quinone reductase subunit C Shewmr4_0751 873961 - 874581 + | Na(+)-translocating NADH-quinone reductase subunit D Shewmr4_0752 874591 - 875199 + | Na(+)-translocating NADH-quinone reductase subunit E Shewmr4_0753 875251 - 876468 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 989 876532 - 876484 - T 71 -6.7 -4.20696 | opp_overlap 876489, overlap 876489 GCAGTAAGTGGAAAA GAAAATCGCGTTAGGCAGGGCTA GTA CAGCTGAGTCTAACGCGATTTTT TTTTATAGGGCTTTT TERM 990 876527 - 876489 - T 88 -6.6 -5.10163 | opp_overlap 876489, overlap 876484 AAGTGGAAAAGAAAA TCGCGTTAGGCAGGGCTA GTA CAGCTGAGTCTAACGCGA TTTTTTTTTATAGGG TERM 991 876489 - 876527 + T 100 -10.3 -6.22802 | opp_overlap 876489 876484 AAGTGGAAAAGAAAA TCGCGTTAGGCAGGGCT AGTAC AGCTGAGTCTAACGCGA TTTTTTTTTATAGGG TERM 992 876613 - 876599 - T 72 -10 -2.81187 | opp_overlap 876591 AAATAGCCCAGCATA CGCTGA CTT TCAGCG GTGTAAGACGGCATA Shewmr4_0754 878044 - 877031 - | transposase IS116/IS110/IS902 family protein Shewmr4_0755 878445 - 878762 + | hypothetical protein TERM 993 878816 - 878798 - f 73 -8.2 -3.60475 | opp_overlap 878804 AACTGGCACTCCAAA CCTCAAGT CAC ACTTAAGG TGTGCCTGTGATAAG Shewmr4_0756 878882 - 880066 + | beta-lactamase Shewmr4_0757 882653 - 880203 - | ankyrin TERM 994 882857 - 882879 + r 100 -13.5 -3.03619 | TACTCATTTACAGGT TCAGCAGGC CTATA GCCTGCTGA TATTGGCGAGTGGTT Shewmr4_0758 883915 - 882893 - | MarR family transcriptional regulator Shewmr4_0759 884520 - 883981 - | NTPase TERM 995 884578 - 884600 + H 71 -4 -4.89567 | overlap 884579 884580 884582 ATCATTGCTTAAATG GTCGGAGGTG TCT CGCCTCTGGG TTTTCTATTTTGCCA TERM 996 886844 - 886872 + G 71 -5.9 -4.28774 | TTAGTGGCGCTTGCC CATGCGGCCTTGA ATC TTGAAGCCGCAGG TTTTGCCTTAGATGC Shewmr4_0760 884777 - 887344 + | peptidase S45, penicillin amidase TERM 997 887371 - 887388 + F 100 -12.7 -5.24129 | opp_overlap 887369 TTTGTTTGATTAATT GGCCCAC TTAG GTGGGCC TTTTTTATGAGGCGG TERM 998 888200 - 888217 + G 78 -2.6 -5.24989 | overlap 888202 CGTCAACCAATTGGG CATGGC TTCACC GCCACG TTTTTTGCTGTCTGG Shewmr4_0761 887781 - 889073 + | amino acid transporter, transmembrane TERM 999 889103 - 889123 + T 100 -13.3 -5.57396 | opp_overlap 889099 889103 GCCGTTTGAAATGAA GGATCGGGT TAT GCCCGATCC TTTTTTATTACTTCT TERM 1000 889123 - 889103 - T 100 -12.6 -3.51232 | opp_overlap 889103, overlap 889099 GCCGTTTGAAATGAA GGATCGGG TTATG CCCGATCC TTTTTTATTACTTCT Shewmr4_0762 889574 - 889131 - | GCN5-related N-acetyltransferase Shewmr4_0763 889794 - 890090 + | hypothetical protein Shewmr4_0764 890252 - 891559 + | sodium:dicarboxylate symporter TERM 1001 891607 - 891564 - T 100 -17.9 -2.6027 | gap 1, opp_overlap 891572 891579, overlap 891569 891572 891579 CGAAAAGTTAATTCA TCGAATAATAAAAAACCGCC AACTA GGCGGTTTTTTATTAT-CGA AGCGAGCTTATTTAA TERM 1002 891603 - 891569 - T 100 -17.5 -3.10112 | opp_overlap 891572 891579, overlap 891564 891572 891579 AGTTAATTCATCGAA TAATAAAAAACCGCC AACTA GGCGGTTTTTTATTA TCGAAGCGAGCTTAT TERM 1003 891572 - 891600 + T 100 -14.8 -3.28791 | opp_overlap 891572 891569 891564 891579, overlap 891579 TAATTCATCGAATAA TAAAAAACCGCC AACTA GGCGGTTTTTTA TTATCGAAGCGAGCT TERM 1004 891600 - 891572 - T 100 -14.8 -3.69283 | opp_overlap 891572 891579, overlap 891569 891564 891579 TAATTCATCGAATAA TAAAAAACCGCC AACTA GGCGGTTTTTTA TTATCGAAGCGAGCT TERM 1005 891579 - 891593 + T 100 -8.5 -5.55769 | opp_overlap 891579 891572 891569 891564, overlap 891572 TCGAATAATAAAAAA CCGCC AACTA GGCGG TTTTTTATTATCGAA TERM 1006 891593 - 891579 - T 100 -8.5 -5.64873 | opp_overlap 891572 891579, overlap 891572 891569 891564 TCGAATAATAAAAAA CCGCC AACTA GGCGG TTTTTTATTATCGAA Shewmr4_0765 892031 - 891615 - | protein of unknown function DUF306, Meta and HslJ Shewmr4_0766 892102 - 892335 + | hypothetical protein Shewmr4_0767 893362 - 892349 - | GGDEF domain-containing protein TERM 1007 893565 - 893576 + G 80 -3 -5.3671 | ACGCCCAGCTACGAC TCAA GATA TTGA TTTTTTAGTTGTATT Shewmr4_0768 893536 - 894078 + | acetyltransferase Shewmr4_0769 894202 - 896217 + | diguanylate phosphodiesterase Shewmr4_0770 896210 - 896551 + | hypothetical protein Shewmr4_0771 897007 - 896558 - | hypothetical protein TERM 1008 897111 - 897082 - R 72 -10.1 -2.75307 | opp_overlap 897090, overlap 897090 AATACATCCTAAGCA TAAAAAAACCGCC CTTA GGCGGTTTTTTCG TGCGAAAGCGTGAGC TERM 1009 897103 - 897090 - R 100 -9.5 -5.71983 | opp_overlap 897090, overlap 897082 CTAAGCATAAAAAAA CCGCC CTTA GGCGG TTTTTTCGTGCGAAA TERM 1010 897090 - 897103 + r 100 -9.5 -5.14563 | opp_overlap 897090 897082 CTAAGCATAAAAAAA CCGCC CTTA GGCGG TTTTTTCGTGCGAAA Shewmr4_0772 898288 - 897137 - | S-adenosylmethionine synthetase TERM 1011 899073 - 899057 - g 79 -6.5 -4.71061 | overlap 899058 AGTTACATTCAAAAA CTCCGGG TCA CCCAGAA TACGGTTACACCCCA Shewmr4_0773 898768 - 900762 + | transketolase TERM 1012 900850 - 900823 - f 76 -9.8 -3.33261 | opp_overlap 900825, overlap 900824 GGTTAATCTGTATAA TGCGGCCTGCAA TCGT TTGCAGGCCGTT TTTGTATATGCAGTA TERM 1013 900849 - 900824 - f 93 -13.3 -2.59742 | opp_overlap 900825, overlap 900823 GTTAATCTGTATAAT GCGGCCTGCAA TCGT TTGCAGGCCGT TTTTGTATATGCAGT TERM 1014 900825 - 900848 + F 100 -16.8 -5.03994 | opp_overlap 900824 900823 TTAATCTGTATAATG CGGCCTGCAA TCGT TTGCAGGCCG TTTTTGTATATGCAG Shewmr4_0774 900891 - 901907 + | erythrose 4-phosphate dehydrogenase pgk 902040 - 903215 + | phosphoglycerate kinase TERM 1015 903226 - 903268 + F 79 -11.2 -3.15758 | overlap 903211 CCTAATATTGAGTTA GGTATTGCGCCATCGCGGCA GGG TGCTGCGATGGCACTAAAGC TTGATAAAAAATTAT TERM 1016 903956 - 903942 - g 72 -10 -3.34043 | opp_overlap 903942 903941 CTGACCAGCCCAGAA GAAGCG GCT CGCTTC GTTGCTGATACCCAT Shewmr4_0776 903414 - 904481 + | fructose-1,6-bisphosphate aldolase TERM 1017 904533 - 904492 - f 78 -10.2 -3.38314 | opp_overlap 904504, overlap 904493 904504 TCTAAGCCTTAAATA CTGCTCTAAAAAGCCCGC CAAAGT GCGGGCTTTTTTATGCAA AAAACCGTTGAATTT TERM 1018 904532 - 904493 - f 80 -11.5 -2.62667 | opp_overlap 904504, overlap 904492 904504 CTAAGCCTTAAATAC TGCTCTAAAAAGCCCGC CAAAGT GCGGGCTTTTTTATGCA AAAAACCGTTGAATT TERM 1019 904504 - 904521 + F 100 -9.8 -5.24129 | opp_overlap 904493 904492 904504 ATACTGCTCTAAAAA GCCCGC CAAAGT GCGGGC TTTTTTATGCAAAAA TERM 1020 904521 - 904504 - f 100 -9.8 -4.57837 | opp_overlap 904504, overlap 904493 904492 ATACTGCTCTAAAAA GCCCGC CAAAGT GCGGGC TTTTTTATGCAAAAA Shewmr4_0777 904620 - 905357 + | hypothetical protein TERM 1021 905371 - 905411 + F 100 -10.8 -4.63184 | gap 1, opp_overlap 905377 905384, overlap 905372 905373 905377 905384 AATCAATGTGATTGA TA-TCAATAAAAAAGCACC GAGA GGTGCTTTTTTATTGGCTG TTTTTGGACTAACTT TERM 1022 905372 - 905409 + F 100 -13.7 -3.92746 | opp_overlap 905377 905384, overlap 905371 905373 905377 905384 ATCAATGTGATTGAT ATCAATAAAAAAGCACC GAGA GGTGCTTTTTTATTGGC TGTTTTTGGACTAAC TERM 1023 905373 - 905408 + F 100 -17.2 -2.95166 | opp_overlap 905377 905384, overlap 905372 905371 905377 905384 TCAATGTGATTGATA TCAATAAAAAAGCACC GAGA GGTGCTTTTTTATTGG CTGTTTTTGGACTAA TERM 1024 905377 - 905404 + F 100 -14.4 -3.32832 | opp_overlap 905377 905384, overlap 905373 905372 905371 905384 TGTGATTGATATCAA TAAAAAAGCACC GAGA GGTGCTTTTTTA TTGGCTGTTTTTGGA TERM 1025 905404 - 905377 - f 100 -14.4 -3.2794 | opp_overlap 905377 905373 905372 905371 905384, overlap 905384 TGTGATTGATATCAA TAAAAAAGCACC GAGA GGTGCTTTTTTA TTGGCTGTTTTTGGA TERM 1026 905384 - 905397 + F 100 -8.1 -5.49234 | opp_overlap 905377 905384, overlap 905377 905373 905372 905371 GATATCAATAAAAAA GCACC GAGA GGTGC TTTTTTATTGGCTGT TERM 1027 905397 - 905384 - f 100 -8.1 -5.5353 | opp_overlap 905384 905377 905373 905372 905371, overlap 905377 GATATCAATAAAAAA GCACC GAGA GGTGC TTTTTTATTGGCTGT TERM 1028 906137 - 906101 - g 79 -12.2 -3.28712 | overlap 906106 GCCGGTGGCCGATAA CTTAACCACGGCGCTC TTGAT GTGCGCCGTGGTGATG AAAGTGGGCGCTGGT TERM 1029 906132 - 906106 - g 90 -15.1 -3.23274 | overlap 906101 TGGCCGATAACTTAA CCACGGCGCTC TTGAT GTGCGCCGTGG TGATGAAAGTGGGCG Shewmr4_0778 905598 - 907067 + | Na+/H+ antiporter Shewmr4_0779 907234 - 907983 + | response regulator receiver protein Shewmr4_0780 907976 - 908524 + | hypothetical protein TERM 1030 908562 - 908545 - T 100 -11.3 -4.4727 | opp_overlap 908545 TTAAGACGTAGAAAA GGCATCC AATT GGATGCC TTTTTTTGGGCGCGA TERM 1031 908545 - 908562 + T 100 -11.3 -5.40072 | opp_overlap 908545 TTAAGACGTAGAAAA GGCATCC AATT GGATGCC TTTTTTTGGGCGCGA Shewmr4_0781 909110 - 908586 - | hypothetical protein Shewmr4_0782 909945 - 909121 - | cytochrome c, putative TERM 1032 909428 - 909409 - G 73 -12.2 -2.53449 | overlap 909408 909406 AGAGTGGCACAATAC GCTCATCG CCTT CGATGAGC TGCCTACGAGCGCGG Shewmr4_0783 910387 - 911130 + | lysine decarboxylase transcriptional regulator, CadC Shewmr4_0784 911123 - 911653 + | hypothetical protein Shewmr4_0785 911738 - 913138 + | hypothetical protein Shewmr4_0786 915356 - 913119 - | putative PAS/PAC sensor protein Shewmr4_0787 916215 - 915490 - | radical SAM domain-containing protein TERM 1033 916339 - 916312 - R 100 -14.4 -2.87211 | opp_overlap 916318, overlap 916318 AGTGGGGGCCAGACA TAAAAAGAGAGC CTAG GCTCTCTTTTTA TGGGGTGACTATGAT TERM 1034 916318 - 916333 + r 100 -9 -4.85599 | opp_overlap 916318 916312 GGCCAGACATAAAAA GAGAGC CTAG GCTCTC TTTTTATGGGGTGAC TERM 1035 916333 - 916318 - R 100 -9 -5.03994 | opp_overlap 916318, overlap 916312 GGCCAGACATAAAAA GAGAGC CTAG GCTCTC TTTTTATGGGGTGAC Shewmr4_0788 919571 - 916368 - | acriflavin resistance protein TERM 1036 916999 - 917029 + g 71 -6.8 -4.17023 | ATAGCATTCTGTTCA TCCAAACTGCCACC ATC GAGGGTGGTTTGGA TTTTCGGATACTTGG TERM 1037 918262 - 918278 + g 71 -5.1 -4.56597 | opp_overlap 918254 GTTAACACCCCGAAG GTGGC GGGCATG GCCAC TTTTTGCGCCCCGCG Shewmr4_0789 920788 - 919571 - | RND family efflux transporter MFP subunit TERM 1038 920391 - 920403 + g 83 -9.1 -4.3255 | TCGATTTTAGCGACT TCGCC ACG GGCGA TTTCTTCATTGAGCG TERM 1039 920427 - 920449 + g 70 -9.8 -3.19192 | TTGAGCGCCGCAGTT GCCTGAGCCA AGG TGGCTTCGGC TTGCATTAAATCGGC TERM 1040 921027 - 921013 - R 100 -9.2 -5.31877 | opp_overlap 921013 AGTGAGCATAAAAAA GCCGCA TTA CGCGGC TTTAGGGAGTGTTTA TERM 1041 921013 - 921027 + r 73 -8.5 -3.58329 | opp_overlap 921013 AGTGAGCATAAAAAA GCCGC ATTAC GCGGC TTTAGGGAGTGTTTA Shewmr4_0790 922302 - 921040 - | ATP-dependent RNA helicase SrmB TERM 1042 924372 - 924393 + G 70 -8.8 -3.61774 | CCATGAGATCCGCAC GCCTATGA ATGCCA TCATAGGC TTTAGCGATATTCTG Shewmr4_0791 922705 - 926061 + | multi-sensor hybrid histidine kinase Shewmr4_0792 926064 - 927059 + | response regulator receiver modulated metal dependent phosphohydrolase Shewmr4_0793 927844 - 927134 - | methyltransferase small TERM 1043 927630 - 927640 + g 93 -8.2 -5.07486 | ATATTGTATCTACAG GCCG CTG CGGC TTTTTCTTCCAACTC Shewmr4_0794 928383 - 929786 + | branched-chain amino acid transport system II carrier protein TERM 1044 929850 - 929828 - f 100 -14.2 -3.38072 | opp_overlap 929828 TTGAGTTAATATCAA CGGCGTATCC TTA GAATACGCCG TTTTTTTATGGAGTT TERM 1045 929828 - 929850 + F 100 -12 -5.63504 | opp_overlap 929828 TTGAGTTAATATCAA CGGCGTATCC TTA GAATACGCCG TTTTTTTATGGAGTT Shewmr4_0795 929869 - 930771 + | tyrosine recombinase XerD Shewmr4_0796 930922 - 931647 + | thiol:disulfide interchange protein DsbC TERM 1046 931696 - 931678 - f 86 -10.3 -3.74872 | opp_overlap 931678 ATTTATCCCATTAAA GGTGAGC TTAAG GCTCACC TTTTTGTTATCTTAG TERM 1047 931678 - 931696 + F 100 -11 -5.29716 | opp_overlap 931678 ATTTATCCCATTAAA GGTGAGCT TAA GGCTCACC TTTTTGTTATCTTAG TERM 1048 932301 - 932315 + G 76 -7 -4.57353 | AGTAAATCCATTGCT GGCGTC GGG GTCGCC TTTTATCTGATGACG Shewmr4_0797 931740 - 933464 + | single-stranded-DNA-specific exonuclease RecJ TERM 1049 933647 - 933614 - g 84 -13.3 -3.41693 | gap 1, opp_overlap 933610 933624, overlap 933617 933624 TTGACGACCAAGGAA CAGGGCCAAATGCTGA TTA TCGGCATTTGGCC-TG CGGCTTCACTGCTTT TERM 1050 933645 - 933617 - g 86 -16.1 -2.56164 | opp_overlap 933610 933624, overlap 933614 933624 ACGACCAAGGAACAG GGCCAAATGCTGA TTA TCGGCATTTGGCC TGCGGCTTCACTGCT Shewmr4_0798 933503 - 933832 + | hypothetical protein Shewmr4_0799 933846 - 934280 + | GCN5-related N-acetyltransferase TERM 1051 934720 - 934693 - T 100 -13.6 -3.65991 | opp_overlap 934699, overlap 934699 ATTTCTCTAAGACAA CAAAAAGCCAGC ATCA GCTGGCTTTTTA GTGAAGGGATTAATC TERM 1052 934714 - 934699 - T 100 -10.4 -5.29716 | opp_overlap 934699, overlap 934693 CTAAGACAACAAAAA GCCAGC ATCA GCTGGC TTTTTAGTGAAGGGA TERM 1053 934699 - 934714 + T 100 -10.4 -4.72272 | opp_overlap 934693 934699 CTAAGACAACAAAAA GCCAGC ATCA GCTGGC TTTTTAGTGAAGGGA Shewmr4_0800 936321 - 934744 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1054 935447 - 935460 + g 73 -3.1 -4.93968 | gap 1 AATAAACCATCGCTC GCCAGT TTA AC-GGC TTTTTGGTTATCCAT Shewmr4_0801 937128 - 936559 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 1055 937117 - 937127 + g 71 -5.4 -4.56093 | opp_overlap 937117 TGTGCTGTTGATAAT TGAC TGA GTCA TTTTATGCTTCCATT TERM 1056 937378 - 937396 + r 89 -11.8 -3.30453 | opp_overlap 937378 CAGGGCAATAAAAAA GGGATATC GAC GATATCCC TTAATCTAGCTTCTC TERM 1057 937396 - 937378 - R 100 -11.8 -5.46657 | opp_overlap 937378 CAGGGCAATAAAAAA GGGATATC GAC GATATCCC TTAATCTAGCTTCTC Shewmr4_0802 939005 - 937470 - | leucyl aminopeptidase TERM 1058 938253 - 938288 + g 71 -11.1 -2.7644 | overlap 938222 938252 CAACTTAGGTGGACG CTCGCTGCCTTTGCC CACAGC GGCTAAGGCGCCGAG GTTTAAACGTTCAAT Shewmr4_0803 939838 - 939095 - | spermine synthase TERM 1059 939279 - 939296 + g 71 -6.3 -4.28375 | gap 1 AAATGGTGCTGCAGA TCGGCGAG TAA CTCGC-GA TTTTGGCTGTGTTCC TERM 1060 939453 - 939475 + g 73 -11.9 -2.55896 | overlap 939452 939469 ACCTTTTTATGCTCC GCCGACGCC ATAAA GGCGACGGC ATCTTCGTTGATGAG Shewmr4_0804 939939 - 940484 + | hypothetical protein TERM 1061 940541 - 940557 + F 100 -8.7 -4.90381 | AAACTGTTGTTGGCG CTGGGTG AGA CACTCAG TTTTATTATCTTCCC Shewmr4_0805 940733 - 941278 + | hypothetical protein TERM 1062 941316 - 941362 + T 100 -11.9 -3.9373 | gap 2, opp_overlap 941321 941326, overlap 941321 AAAGTTAAGCATTTA GC-T-AAGCCAACCCATTAATCA TAT TGGTTAAGGGGTTGGCTTGATGC TTTCGGTTTTGACTA TERM 1063 941355 - 941321 - T 100 -14.4 -3.0894 | opp_overlap 941316 941321, overlap 941326 TAAGCATTTAGCTAA GCCAACCCATTAATCA TAT TGGTTAAGGGGTTGGC TTGATGCTTTCGGTT TERM 1064 941321 - 941355 + T 100 -16.6 -3.33885 | opp_overlap 941321 941326, overlap 941316 TAAGCATTTAGCTAA GCCAACCCATTAATCA TAT TGGTTAAGGGGTTGGC TTGATGCTTTCGGTT Shewmr4_0806 942112 - 941375 - | dienelactone hydrolase TERM 1065 942127 - 942152 + r 100 -16.3 -3.57462 | overlap 942121 942147 TATTTAGTTTCCTCT GTGAGGCTTCA ATGT TGAAGCCTCAC TTTAGCAGTCAGGTA Shewmr4_0807 943169 - 942180 - | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding TERM 1066 943322 - 943303 - R 100 -10.7 -5.77632 | opp_overlap 943303 AAAATCATAAAAAAA GCGAGCC CCTGAC GGCTCGC TTGTACTGATAAGCT TERM 1067 943303 - 943322 + r 83 -10.7 -3.44229 | opp_overlap 943303 AAAATCATAAAAAAA GCGAGCC CCTGAC GGCTCGC TTGTACTGATAAGCT Shewmr4_0808 945205 - 943415 - | flavocytochrome c TERM 1068 945164 - 945180 + g 80 -4.4 -5.18561 | CATCGCACCAGAGAT CAGCAT GGCTA GTGCTG TTTTTTGAATCTTTC Shewmr4_0809 945710 - 946120 + | hypothetical protein Shewmr4_0810 946117 - 946641 + | methyltransferase type 12 Shewmr4_0811 946703 - 946993 + | hypothetical protein TERM 1069 947066 - 947086 + T 100 -18.3 -4.90455 | opp_overlap 947066 GCCTTAAACAAAAAA GCGCCCCGA TGT TCGGGGCGC TTTTTATCAATCTCT TERM 1070 947086 - 947066 - T 100 -18.3 -5.63517 | opp_overlap 947066 GCCTTAAACAAAAAA GCGCCCCGA TGT TCGGGGCGC TTTTTATCAATCTCT Shewmr4_0812 947297 - 947112 - | hypothetical protein Shewmr4_0813 948820 - 947396 - | hypothetical protein TERM 1071 949020 - 948993 - R 100 -15.8 -3.48395 | opp_overlap 949000 949012, overlap 949000 ATTCGCGGCAGATAA CTAAAAAGCACC CTGA GGTGCTTTTTAG ACGATAGTGACTGTT TERM 1072 949013 - 949000 - R 95 -8.1 -4.96646 | opp_overlap 949000 949012, overlap 948993 GCAGATAACTAAAAA GCACC CTGA GGTGC TTTTTAGACGATAGT TERM 1073 949000 - 949013 + r 86 -8.1 -4.58663 | opp_overlap 949000 948993, overlap 949012 GCAGATAACTAAAAA GCACC CTGA GGTGC TTTTTAGACGATAGT Shewmr4_0814 949472 - 949047 - | OsmC family protein Shewmr4_0815 949601 - 950098 + | MarR family transcriptional regulator Shewmr4_0816 950164 - 951354 + | FAD dependent oxidoreductase TERM 1074 952171 - 952181 + G 70 -2.4 -5.00616 | TGCCCTTGTTTATTC GCCC CAA GAGC TTTTTTCAAACCAAC rumB 951534 - 952688 + | 23S rRNA methyluridine methyltransferase Shewmr4_0818 953932 - 952703 - | periplasmic sensor signal transduction histidine kinase TERM 1075 952808 - 952821 + g 80 -2.3 -5.42862 | opp_overlap 952809, overlap 952809 CTCCAGCGTGCCATA ATGCC AAGT GGCAA TTTTTTTGACGATAT TERM 1076 952882 - 952901 + g 74 -4.2 -4.81249 | TCTGTTGGCTGTCTC GTTCGAAG GCGA CTACGAGC TTTTTGCCTTTGCCC TERM 1077 953936 - 953949 + r 81 -5.3 -5.09895 | opp_overlap 953921 953914 953943 953944, overlap 953933 953944 CTGAAATTTCATTTC GGTTA AACC TAACC TTTTTTAGGTAAGTA Shewmr4_0819 954660 - 953944 - | two component transcriptional regulator Shewmr4_0820 955076 - 954657 - | hypothetical protein Shewmr4_0821 955908 - 955066 - | MltA-interacting MipA family protein Shewmr4_0822 956202 - 961319 + | cell wall anchor domain-containing protein TERM 1078 961369 - 961391 + F 100 -13.5 -5.72622 | opp_overlap 961365 TCCTGAATTTAGGAT GCCGGCAAA TGGAT TTTGCCGGC TTTTTTGTTTATGGA Shewmr4_0823 961482 - 962654 + | chromate transporter TERM 1079 962789 - 962764 - f 70 -2.5 -4.99643 | TATTAAAAAAAATAA GCTCGATCACC CTGG AGTAAGCAAGC ATGTCGAATTTAAGC Shewmr4_0824 962790 - 964454 + | methyl-accepting chemotaxis sensory transducer TERM 1080 964516 - 964494 - T 100 -12 -4.21631 | opp_overlap 964496, overlap 964496 AAGTTAGCGAATAAA GACGGGAGAC AGT GTCTCCCGTT TTTTATGTTTATCTT TERM 1081 964496 - 964514 + T 100 -14.6 -5.59879 | opp_overlap 964494 964496 GTTAGCGAATAAAGA CGGGAGAC AGT GTCTCCCG TTTTTTATGTTTATC TERM 1082 964514 - 964496 - T 100 -14.6 -3.70307 | opp_overlap 964496, overlap 964494 GTTAGCGAATAAAGA CGGGAGAC AGT GTCTCCCG TTTTTTATGTTTATC Shewmr4_0825 968860 - 964562 - | formate dehydrogenase, alpha subunit TERM 1083 964706 - 964723 + g 70 -8.3 -3.72576 | opp_overlap 964705 964703 964708 GAACGGCAGGAACAG CACGCCC GCTT GGGCGCG TTTAGTCACAAAGGC TERM 1084 966773 - 966761 - G 73 -9.1 -3.72893 | opp_overlap 966768 966768 966770 CATGCTCGCACTAAA GCCGA CTC TCGGC GCGCGGCGCTCCATG TERM 1085 967343 - 967315 - G 77 -11.7 -3.17212 | overlap 967317 TTAGCATCTTATCAA TAGCGATTGCCGC TTT ACGGCCATCGCCA ATGGCGGCTACGGCG TERM 1086 967341 - 967317 - G 77 -12.1 -3.1478 | overlap 967315 AGCATCTTATCAATA GCGATTGCCGC TTT ACGGCCATCGC CAATGGCGGCTACGG TERM 1087 967594 - 967617 + g 74 -7.4 -4.26076 | gap 1, overlap 967595 GCGCGCGTCTGCCCG AGGCA-TCGGC TTC GCCGAGTGCCA TTTTGCTGAAGGTGA TERM 1088 967595 - 967616 + g 71 -10.9 -3.15324 | gap 1, overlap 967594 CGCGCGTCTGCCCGA GGCA-TCGGC TTC GCCGAGTGCC ATTTTGCTGAAGGTG TERM 1089 967805 - 967846 + g 76 -4.9 -5.01732 | overlap 967807 GCGCACGGCGGTGCG GGCGCAGTCGATGGCGGTG TTGC CACCACCAATCACGGCGAC TTTTTTGCCCAACTT TERM 1090 968617 - 968634 + g 77 -10.5 -3.56594 | overlap 968618 GGGTGATGACCTTCA TGCCCGC TTCG GCGGGCG TTTCACAGGCTTTAA TERM 1091 968618 - 968633 + g 74 -11.8 -2.73635 | overlap 968617 GGTGATGACCTTCAT GCCCGC TTCG GCGGGC GTTTCACAGGCTTTA TERM 1092 969035 - 969053 + H 70 -5.2 -4.49781 | opp_overlap 969035 GCTTTGTTGGTGAAA TGCTGTGA TTA TCTCGGCA TTTTATACGTGTTTT Shewmr4_0826 969416 - 970474 + | peptide chain release factor 2 TERM 1093 970703 - 970691 - g 77 -9.1 -4.09685 | CCTTAGGTTTTAAAA CCAGC ATC GCTGG CCGTATCATGGCAAA lysS 970504 - 972006 + | lysyl-tRNA synthetase TERM 1094 972079 - 972050 - f 93 -12.3 -3.19642 | opp_overlap 972057, overlap 972057 AGCATGAGCGAGTAA TAAAAAACCAGCC TAAT GGCTGGTTTTTTT ATGGCAGAGATATTT TERM 1095 972072 - 972057 - f 100 -10.4 -5.5112 | opp_overlap 972057, overlap 972050 GCGAGTAATAAAAAA CCAGCC TAAT GGCTGG TTTTTTTATGGCAGA TERM 1096 972057 - 972072 + F 100 -10.4 -5.60993 | opp_overlap 972057 972050 GCGAGTAATAAAAAA CCAGCC TAAT GGCTGG TTTTTTTATGGCAGA TERM 1097 972487 - 972473 - g 73 -3.4 -4.91109 | overlap 972474 972476 CTGTCACTACAAAAA GCACCG CCA CGGCGA AAAAAGCCCCTGCAA pbpG 972370 - 973326 + | D-alanyl-D-alanine endopeptidase TERM 1098 973349 - 973389 + F 100 -17.1 -3.50535 | opp_overlap 973360, overlap 973349 973351 973360 TTAATTGCTTATCCA TTCAACAAAAAGGCCAGAA TCG TTCTGGCCTTTTTGTTGTC ATTTTTCTAGCACTT TERM 1099 973349 - 973390 + F 100 -15.5 -4.86033 | gap 1, opp_overlap 973360, overlap 973349 973351 973360 TTAATTGCTTATCCA T-TCAACAAAAAGGCCAGAA TCG TTCTGGCCTTTTTGTTGTCA TTTTTCTAGCACTTT TERM 1100 973351 - 973387 + F 100 -24.1 -3.31915 | opp_overlap 973360, overlap 973349 973349 973360 AATTGCTTATCCATT CAACAAAAAGGCCAGAA TCG TTCTGGCCTTTTTGTTG TCATTTTTCTAGCAC TERM 1101 973378 - 973360 - f 100 -13.2 -5.10461 | opp_overlap 973351 973349 973349 973360 TCCATTCAACAAAAA GGCCAGAA TCG TTCTGGCC TTTTTGTTGTCATTT TERM 1102 973360 - 973378 + F 100 -13.2 -5.25772 | opp_overlap 973360, overlap 973351 973349 973349 TCCATTCAACAAAAA GGCCAGAA TCG TTCTGGCC TTTTTGTTGTCATTT TERM 1103 973449 - 973496 + F 82 -5.7 -4.96848 | gap 2, opp_overlap 973462, overlap 973470 AAATTCAAGCAATCG TCCTGCTAAAGATGCGTTGCGTG GCGA TACGC--CGTATCATTGGCGGGA TTTTTCTCTCAAGGA Shewmr4_0829 973516 - 975078 + | rhomboid family protein TERM 1104 975090 - 975129 + T 100 -16 -3.55444 | gap 1, opp_overlap 975079 975081 ATAACAGCCTAAGGT GATTGCTGAAGCTGACC GTAAATA GG-CAGCTTCAGCAATC TTTAAACACTGAGGG Shewmr4_0830 977480 - 975171 - | hypothetical protein TERM 1105 975831 - 975841 + g 100 -6.8 -5.33848 | opp_overlap 975830 975831 GTAGCGGTAATCAAT CCAG AGA CTGG TTTTTTGATTATCCT TERM 1106 977598 - 977635 + r 100 -13.5 -3.76224 | GGCGAGTTAGTTTAC GCGATTGGCGTTAAGCT AAAC AGCTTAACGCCACATGC TTTCGTCAATAAAAA Shewmr4_0831 979374 - 977641 - | MORN repeat-containing protein TERM 1107 978614 - 978602 - G 74 -7.7 -4.18506 | CCATTTTCAAAATAA GTGAG CTG CTCAC CGACCTTATAATTCT TERM 1108 978902 - 978917 + g 73 -5.4 -4.65078 | overlap 978892 ATGCCGACGGCTTGG CCATCT TTAT AGGTGG TTTTGTTGCGGATAT Shewmr4_0832 981672 - 979384 - | hypothetical protein TERM 1109 980250 - 980261 + g 71 -5.8 -4.28656 | overlap 980255 ATTCTGATTCGGGGC TGGC ATAG GCCA TTTTGCCTGTTAACT TERM 1110 981760 - 981750 - H 91 -6.8 -5.43414 | ATTATACACAAAAAA TCCC TTA GGGA ATAAAAAGCTCATGC Shewmr4_0833 981944 - 982906 + | twin-arginine translocation pathway signal TERM 1111 983059 - 983037 - f 74 -7.6 -3.91911 | CCGAGGTGAATCAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT TERM 1112 983223 - 983197 - f 73 -8.7 -3.53012 | opp_overlap 983205 983214 983216, overlap 983166 983165 983201 CCCTTCCCCCCGAAA GCTACGCAGAC GTCCT GTCTGCGTTAC GCGATTTCCTTCAAC TERM 1113 983219 - 983201 - f 74 -10.3 -2.64155 | opp_overlap 983205 983214 983216, overlap 983197 TCCCCCCGAAAGCTA CGCAGAC GTCCT GTCTGCG TTACGCGATTTCCTT Shewmr4_0834 983557 - 985392 + | hypothetical protein TERM 1114 985474 - 985492 + F 76 -6.6 -4.56775 | overlap 985478 985478 CGAGATGTATCAAGG TCGTGGGG CTT CCCCCTGA TTTTTAAACAAGAGT TERM 1115 985672 - 985646 - f 73 -8.7 -3.53012 | opp_overlap 985645, overlap 985615 985614 985650 CCCTTCCCCCCGAAA GCTACGCAGAC GTCCT GTCTGCGTCAC GTGATTTCCTTCAAC TERM 1116 985668 - 985650 - f 74 -10.3 -2.64155 | opp_overlap 985645, overlap 985646 TCCCCCCGAAAGCTA CGCAGAC GTCCT GTCTGCG TCACGTGATTTCCTT Shewmr4_0835 986382 - 986912 + | hypothetical protein Shewmr4_0836 986933 - 987355 + | hypothetical protein TERM 1117 987431 - 987443 + F 78 -2 -5.41746 | AAAAAAGGAGTTACT TTGA TATTT TCAA TTTTTTTGCGGAATT TERM 1118 988229 - 988214 - g 80 -2.5 -5.49569 | overlap 988215 TATGAATATAAAAAA CCTGC TAAAAG GCAGA CTTTATTCAATTTGA Shewmr4_0837 987431 - 989365 + | hypothetical protein TERM 1119 989486 - 989512 + T 73 -8.7 -3.53012 | opp_overlap 989483 989482 989484, overlap 989490 989510 GTTGAAGAAAATCGC GTGACGCAGAC AGGAC GTCTGCGTAGC TTTCGGGGGGAAGGG TERM 1120 989490 - 989508 + T 74 -10.3 -2.64155 | opp_overlap 989483 989482 989484, overlap 989486 AAGAAAATCGCGTGA CGCAGAC AGGAC GTCTGCG TAGCTTTCGGGGGGA TERM 1121 989650 - 989674 + T 88 -9.9 -4.18018 | CAGTCCTCCTTGGTC GGGTGTGGGGT GAA GCCCCACGACC TTTTCGGTCGCAAGA TERM 1122 989745 - 989726 - T 93 -10.8 -4.1822 | CGTTAGCGTAATAAA GATCCTGA TTAT TCAGGATC ATAATCCAACACTGG metH 993468 - 989734 - | B12-dependent methionine synthase TERM 1123 990435 - 990447 + g 74 -4.8 -4.75372 | opp_overlap 990429 990426 ACCCAATCACGCCCT TGGC GGTGA GCCA TTTTTCATCAATGAT TERM 1124 992275 - 992304 + g 74 -8.5 -4.03174 | TTCTACCTGTTCACG GGCGACATCGAGC GCCT GCTCGAACTTGCC TTCTTTGATCAGTTT TERM 1125 993083 - 993071 - G 80 -10.5 -3.67052 | opp_overlap 993068 993067 ACACCGGCAACATAA CGGGG TTT CCCCG TGGCCTTTTCGATTT Shewmr4_0839 993679 - 994401 + | phosphoglycerate mutase TERM 1126 995136 - 995146 + G 70 -8.2 -3.71378 | opp_overlap 995127 ATATTAGCGAACTGT CGCC CAA GGCG TTTGCCTGTAAAGTG Shewmr4_0840 994874 - 995839 + | ABC transporter related TERM 1127 996259 - 996298 + G 70 -4.3 -4.62471 | gap 1, overlap 996260 996261 CTGTTTACCAGTTCT GGCCTG-TTTGGCAATGG GGGCG CCATTGCCAACTCAGGGA TTTTTAGCGGTTCGG TERM 1128 996261 - 996296 + G 70 -11.3 -2.61718 | gap 1, overlap 996260 996259 GTTTACCAGTTCTGG CCTG-TTTGGCAATGG GGGCG CCATTGCCAACTCAGG GATTTTTAGCGGTTC Shewmr4_0841 995836 - 996984 + | transport system permease protein cobT 997259 - 998311 + | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase cobS 998408 - 999196 + | cobalamin synthase TERM 1129 999211 - 999249 + G 79 -13.1 -3.14683 | gap 1, opp_overlap 999233 ATCCATTTAGTGCTA GGCGGCGCGCGTAGCGGT AAGA GCCGCTACG-GCGAAGCC TTAGTGCGCCAGTAT Shewmr4_0844 999193 - 999795 + | adenosylcobinamide kinase TERM 1130 1000063 - 1000079 + G 80 -10.1 -4.07568 | TTGCTGGCCAGGCAG GGCGTGA AGG TCGCGCC TTTTAAACCGCAGAA Shewmr4_0845 999883 - 1001508 + | cobyric acid synthase Shewmr4_0846 1001537 - 1002172 + | cob(I)yrinic acid a,c-diamide adenosyltransferase Shewmr4_0847 1002328 - 1003365 + | hypothetical protein TERM 1131 1003586 - 1003570 - g 85 -3.5 -5.41746 | opp_overlap 1003568 1003570 1003571, overlap 1003571 AAGCGGCGAAAAAAA TCCCCAG TAT CGGGGGG TATTATGGGATCCAG TERM 1132 1004177 - 1004124 - g 70 -10.3 -2.97297 | gap 1, opp_overlap 1004126, overlap 1004123 ATTTATCAATTAAAT GCCGACCTATTACACCGGGCAACGCC AAG GGCACTACTCGGTGTAA-AGGCAGTC TGTGATGCTTTGGAT Shewmr4_0848 1003380 - 1004204 + | periplasmic binding protein Shewmr4_0849 1004283 - 1004666 + | hypothetical protein Shewmr4_0850 1004720 - 1005034 + | hypothetical protein Shewmr4_0851 1005378 - 1005602 + | hypothetical protein TERM 1133 1005607 - 1005617 + F 70 -5.4 -4.48713 | GCACTCAATAACGGC GATG TAT CATC TTTGTTCTTGCTGCG TERM 1134 1005696 - 1005669 - f 100 -17.2 -2.63301 | opp_overlap 1005671 1005690, overlap 1005671 CACAGTGTCATAGTA GAGGGGCAAATA ATCC TATTTGCCCCTC TTGGGCTTTAAGTTG TERM 1135 1005694 - 1005671 - f 95 -14 -2.85668 | opp_overlap 1005671 1005690, overlap 1005669 CAGTGTCATAGTAGA GGGGCAAATA ATCC TATTTGCCCC TCTTGGGCTTTAAGT TERM 1136 1005671 - 1005694 + F 100 -14 -3.12936 | opp_overlap 1005669 1005671, overlap 1005690 CAGTGTCATAGTAGA GGGGCAAATA ATCC TATTTGCCCC TCTTGGGCTTTAAGT TERM 1137 1005735 - 1005764 + F 72 -9.4 -3.09823 | opp_overlap 1005738, overlap 1005729 1005738 CACCCTAAACTCTAC TAAGGAGGAAAG TTCGTT CTATCCTCCTTA TATGGTTTTCACAAG Shewmr4_0852 1006485 - 1006880 + | methylation site containing protein Shewmr4_0853 1006905 - 1007363 + | methylation site containing protein Shewmr4_0854 1007393 - 1007809 + | type IV pilus modification protein PilV Shewmr4_0855 1007818 - 1008354 + | prepilin-type cleavage/methylation-like protein Shewmr4_0856 1008421 - 1009590 + | hypothetical protein TERM 1138 1009666 - 1009638 - T 89 -11.8 -3.29211 | opp_overlap 1009638, overlap 1009633 TAATGGCAAATCTAA CACCCCGAAAAT ATTTG ATTATCGGGGTG TTTTTTCTCATTACT TERM 1139 1009638 - 1009666 + T 100 -11.8 -5.38249 | opp_overlap 1009633 1009638 TAATGGCAAATCTAA CACCCCGAAAAT ATTTG ATTATCGGGGTG TTTTTTCTCATTACT Shewmr4_0857 1009970 - 1009677 - | hypothetical protein TERM 1140 1010021 - 1010002 - R 72 -9.2 -3.20349 | opp_overlap 1010002, overlap 1010000 1009995 TGGGCAAAGTGAAGA GGGCGTTG AGTG CATCGCCC TTTTAATAACCCTAA TERM 1141 1010002 - 1010021 + r 88 -9.2 -4.26076 | opp_overlap 1010000 1009995 1010002 TGGGCAAAGTGAAGA GGGCGTTG AGTG CATCGCCC TTTTAATAACCCTAA Shewmr4_0858 1010573 - 1010217 - | hypothetical protein Shewmr4_0859 1011779 - 1010733 - | hypothetical protein TERM 1142 1011163 - 1011181 + g 70 -8.8 -3.53761 | TCTGCATAGGTTTCA TCGGCCAC AAA GTGGCCCA TTTGCGACAACATTC TERM 1143 1011227 - 1011243 + g 91 -8.7 -4.82901 | overlap 1011235 AGGTCTGTGCCAGCT GCTCATC ATC GGTGAGC TTTTTCTCAAGCCAC TERM 1144 1011267 - 1011278 + g 72 -3.6 -4.84017 | AAGCCACTGATTAAT GGCG GGAA TGCC TTTTTGTGGGCCGTT TERM 1145 1011769 - 1011780 + g 78 -2.2 -5.31275 | AGCTTAAGTAACTTC CGTG TATT CATG TTTTTTCTCGTAAAA TERM 1146 1011833 - 1011848 + r 77 -10.4 -3.0806 | opp_overlap 1011833 GCTGGTTATAAAAAA GTCGCC CTAA GGCGAC TCTTAACGGTTTAGA TERM 1147 1011848 - 1011833 - R 100 -10.4 -5.24129 | opp_overlap 1011833 GCTGGTTATAAAAAA GTCGCC CTAA GGCGAC TCTTAACGGTTTAGA Shewmr4_0860 1012958 - 1011915 - | dihydroorotase TERM 1148 1013114 - 1013101 - H 72 -8.1 -3.87815 | TCCTATGTTCACAAA CCGCT TTTC AGCGG ACACTTTCGCGAAAA TERM 1149 1013170 - 1013152 - H 76 -8 -4.16284 | opp_overlap 1013152 1013159 ACACTTTCTAATAAA GCCCTCGG TGT CCGCGGAC ACTTTTATCTTAAAC TERM 1150 1013159 - 1013172 + H 79 -6.7 -4.66938 | opp_overlap 1013152, overlap 1013152 CTAATAAAGCCCTCG GTGTC CGCG GACAC TTTTATCTTAAACAT Shewmr4_0861 1013317 - 1014579 + | RND family efflux transporter MFP subunit Shewmr4_0862 1014579 - 1014950 + | hypothetical protein Shewmr4_0863 1015051 - 1015791 + | ABC transporter related Shewmr4_0864 1015800 - 1017104 + | hypothetical protein Shewmr4_0865 1017116 - 1018315 + | hypothetical protein TERM 1151 1018362 - 1018335 - f 100 -14.4 -3.19157 | opp_overlap 1018335 GATGAAGGGCATTAA GTGCAATAACAT TAGG ATGTTATTGCAC TTTTTGTTACTTTAA TERM 1152 1018335 - 1018362 + F 100 -14.4 -5.24551 | opp_overlap 1018335 GATGAAGGGCATTAA GTGCAATAACAT TAGG ATGTTATTGCAC TTTTTGTTACTTTAA TERM 1153 1018601 - 1018573 - g 84 -13.9 -3.38207 | TATCCAAGATATGAA CTTCACCCGCGAT ACT ACCTCGGGTGAAG AAGGGCGGCAGCTGT TERM 1154 1018717 - 1018705 - g 71 -10.5 -3.07816 | GGTCGAGTTAGTTAA GGCGG GCG CCGCC GACTATATGGGTAAA TERM 1155 1019033 - 1019021 - g 73 -3.4 -5.04249 | CCCTTAAAAAACAAA CCTT TTATC AAGG TGAATGTGGGCGCCT TERM 1156 1019136 - 1019158 + G 71 -5.5 -4.57341 | gap 1, overlap 1019138 GTATTGGTCGCTTCG AAGCG-GCCG ATGG CGGCACGCTG TTTTTGGACGAAATT TERM 1157 1019138 - 1019156 + G 72 -8.1 -3.90048 | gap 1, overlap 1019136 ATTGGTCGCTTCGAA GCG-GCCG ATGG CGGCACGC TGTTTTTGGACGAAA Shewmr4_0866 1018412 - 1019866 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1158 1020694 - 1020709 + G 74 -4.7 -4.8048 | CTCATGTATGCCAAC GATGC GGCGCG GCATC TTTTTCATATCAAAG Shewmr4_0867 1019908 - 1021575 + | periplasmic sensor signal transduction histidine kinase Shewmr4_0868 1021808 - 1022218 + | curli production assembly/transport component CsgE, putative Shewmr4_0869 1022229 - 1022624 + | curli production assembly/transport component CsgF, putative TERM 1159 1023083 - 1023061 - g 70 -9.8 -3.29947 | overlap 1023063 CAGTTACGAGACCAA CACCAGCACC GGC GGTACTGGGG TGGAATACTATGGCA TERM 1160 1023081 - 1023063 - g 76 -11 -3.214 | overlap 1023061 GTTACGAGACCAACA CCAGCACC GGC GGTACTGG GGTGGAATACTATGG Shewmr4_0870 1022624 - 1023430 + | curli production assembly/transport component CsgG TERM 1161 1023452 - 1023477 + T 100 -7.5 -5.71983 | gap 1, opp_overlap 1023446 1023452 TTGCGATAACAAGCA CCGAGCCTG-CG ACA TGTCTGGCTCGG TTTTTTTATGGTTAA Shewmr4_0871 1024097 - 1023489 - | TetR family transcriptional regulator TERM 1162 1023589 - 1023579 - G 78 -2.4 -5.28176 | opp_overlap 1023582 GTTATCGATAAAAAA GCGC GTG GCGG CCAAGTATTGGCCAT Shewmr4_0872 1025543 - 1024119 - | aldehyde dehydrogenase TERM 1163 1025623 - 1025600 - H 100 -12.6 -4.82901 | opp_overlap 1025604, overlap 1025604 TGTGGCGTATAAAAA TAAACCGACT GATT AGTCGGTTTA TCCTAGCGAATAGAG TERM 1164 1025604 - 1025619 + H 80 -9 -3.96327 | opp_overlap 1025600 1025604 GCGTATAAAAATAAA CCGACT GATT AGTCGG TTTATCCTAGCGAAT TERM 1165 1025619 - 1025604 - H 100 -9 -4.96501 | opp_overlap 1025604, overlap 1025600 GCGTATAAAAATAAA CCGACT GATT AGTCGG TTTATCCTAGCGAAT Shewmr4_0873 1025741 - 1026139 + | hypothetical protein Shewmr4_0874 1026159 - 1026590 + | UspA domain-containing protein TERM 1166 1026628 - 1026609 - f 74 -9.2 -3.3785 | opp_overlap 1026611, overlap 1026611 TTAACCCAGGTACAA GAGGGCGC TAAG GCGCCCTT TGTTTTTGATTGCTA TERM 1167 1026611 - 1026626 + F 100 -11.8 -4.96773 | opp_overlap 1026609 1026611 AACCCAGGTACAAGA GGGCGC TAAG GCGCCC TTTGTTTTTGATTGC TERM 1168 1026626 - 1026611 - f 89 -11.8 -3.25668 | opp_overlap 1026611, overlap 1026609 AACCCAGGTACAAGA GGGCGC TAAG GCGCCC TTTGTTTTTGATTGC TERM 1169 1026988 - 1026976 - g 78 -4.1 -5.14563 | TTGTCGATGAAAAAA TGCAG AGC CTACA GCAGGAGATGCAGCT Shewmr4_0875 1026753 - 1027202 + | UspA domain-containing protein Shewmr4_0876 1028063 - 1027206 - | extracellular solute-binding protein TERM 1170 1027634 - 1027647 + g 74 -2.3 -5.06414 | ACACAGAGGCCCGTT GGAAG GCGA CTACC TTTTTATTGGCGAGG Shewmr4_0877 1028738 - 1028187 - | hypothetical protein Shewmr4_0878 1028937 - 1029272 + | hypothetical protein TERM 1171 1029776 - 1029803 + G 70 -4.8 -4.73388 | gap 1 GAGCTCGATAAGCAA GTGTC-TATGGCC GAG GGCCAAGCGGCAC TTTTTACTCCCCATT Shewmr4_0879 1029269 - 1030744 + | FAD dependent oxidoreductase TERM 1172 1031053 - 1031074 + G 74 -4.4 -4.82901 | opp_overlap 1031054, overlap 1031054 TGGCTACCCCGATAG AGCCAACT GGCTCG AGTTGGCC TTTTTATCCGAGACG Shewmr4_0880 1030841 - 1031206 + | hypothetical protein Shewmr4_0881 1031544 - 1031203 - | hypothetical protein TERM 1173 1031809 - 1031831 + G 71 -7.7 -4.07831 | gap 1 ATTTCTTAAGCCCTA TCGCCTGCGG GTGG TCGC-GGCGA TTGTATTTCTTTTGA TERM 1174 1031953 - 1031995 + G 82 -8.3 -4.57755 | overlap 1031962 AATTATTTTGTTGGT ACTGCTGATCACCGCAGTG AGTGG CACTGCGGTGTTTTGCCGA TTTTATCTGATGACT TERM 1175 1031962 - 1031986 + G 100 -15.8 -4.19879 | overlap 1031953 GTTGGTACTGCTGAT CACCGCAGTG AGTGG CACTGCGGTG TTTTGCCGATTTTAT Shewmr4_0882 1031678 - 1033519 + | lipid ABC transporter ATPase/inner membrane protein TERM 1176 1033539 - 1033581 + T 100 -18 -2.74792 | opp_overlap 1033545 1033550, overlap 1033545 1033550 TGGACGGGAATGTAA TGCAAATAAAACCCCAGAGT GTT GCTCTGGGGTTTTATTTGGG ATTTAAGACTGCTCA TERM 1177 1033545 - 1033575 + T 100 -17.8 -3.71649 | opp_overlap 1033545 1033550, overlap 1033539 1033550 GGAATGTAATGCAAA TAAAACCCCAGAGT GTT GCTCTGGGGTTTTA TTTGGGATTTAAGAC TERM 1178 1033575 - 1033545 - T 100 -17.1 -3.78409 | opp_overlap 1033545 1033539 1033550, overlap 1033550 GGAATGTAATGCAAA TAAAACCCCAGAG TGTTG CTCTGGGGTTTTA TTTGGGATTTAAGAC TERM 1179 1033550 - 1033570 + T 100 -13.3 -4.91429 | opp_overlap 1033545 1033550, overlap 1033545 1033539 GTAATGCAAATAAAA CCCCAGAGT GTT GCTCTGGGG TTTTATTTGGGATTT TERM 1180 1033570 - 1033550 - T 100 -12.6 -4.94058 | opp_overlap 1033550 1033545 1033539, overlap 1033545 GTAATGCAAATAAAA CCCCAGAG TGTTG CTCTGGGG TTTTATTTGGGATTT Shewmr4_0883 1035225 - 1033621 - | AMP-dependent synthetase and ligase Shewmr4_0884 1036244 - 1035462 - | methionine aminopeptidase, type I TERM 1181 1035812 - 1035824 + g 82 -7.7 -4.67982 | overlap 1035799 CGCCTAGAGTCGCCC CAGGT TTT ACCTG TTTTATTCCCTGCCA TERM 1182 1036064 - 1036076 + g 79 -9.1 -4.23892 | CATACTGACCTTTAC TCGCG GGA CGCGA TTTTAGCTCATTGAC Shewmr4_0885 1036461 - 1036237 - | hypothetical protein TERM 1183 1036786 - 1036742 - R 100 -13.7 -3.25088 | gap 1, opp_overlap 1036744, overlap 1036745 TGCGAAAGTGACTAA CAGTGATGCAGTGTGCTCGC TTATCG GCGAGCACACTGCCGCA-TG ACGCGCTAAGGGCTA TERM 1184 1036784 - 1036745 - R 100 -16.5 -2.50784 | opp_overlap 1036744, overlap 1036742 GAAAGTGACTAACAG TGATGCAGTGTGCTCGC TTATCG GCGAGCACACTGCCGCA TGACGCGCTAAGGGC Shewmr4_0886 1038222 - 1036792 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 1185 1037621 - 1037609 - G 71 -10.5 -3.04715 | overlap 1037608 CAGGTCGTCCAAAAG CCGGC GTT GCCGG TAAAAATATCCAAAT TERM 1186 1038341 - 1038372 + r 100 -18.2 -4.62302 | opp_overlap 1038350 CGATTTAGTAGGTGT CGCGATATATCGCT AATT GGCGATATATCGCG TTTTTAAAGCTATTC Shewmr4_0887 1039848 - 1038382 - | Fis family transcriptional regulator TERM 1187 1040294 - 1040280 - R 100 -11.4 -4.59853 | opp_overlap 1040280 TGAAGTGTGCAAAAA GGCTGC GAT GCAGCC TTTTTTATTGCGCGA TERM 1188 1040280 - 1040294 + r 100 -11.4 -5.4505 | opp_overlap 1040280 TGAAGTGTGCAAAAA GGCTGC GAT GCAGCC TTTTTTATTGCGCGA Shewmr4_0888 1040904 - 1040359 - | thiol:disulfide interchange protein, putative TERM 1189 1040672 - 1040647 - G 72 -8.3 -3.95073 | gap 1, opp_overlap 1040663 GGTGATATCCACAAA CACTGTGTAGCC ATC GGCGAC-CAGTG GCGCGATTTTTTCAG TERM 1190 1041432 - 1041472 + G 74 -9.5 -3.53091 | opp_overlap 1041434, overlap 1041470 CGTTTATTTTCAACG GAGGCCCAGGTTCTGCCTC GCT GTGGCTGCACATGGGACTC TTTGGGCCAAAGCGT Shewmr4_0889 1041107 - 1042657 + | peptidase S10, serine carboxypeptidase TERM 1191 1042704 - 1042719 + F 100 -10.4 -5.04325 | TGCCACTCCTGTGAA GGCCCT ATTG AGGGCC TTTTTATGCTTTAAA Shewmr4_0890 1042744 - 1043358 + | lysine exporter protein LysE/YggA TERM 1192 1043432 - 1043415 - T 100 -11.3 -5.80248 | opp_overlap 1043415 GAAGAGATAAAAAAA CGCCATC ACAA GATGGCG TTTTTTATGGGATTT TERM 1193 1043415 - 1043432 + T 100 -11.3 -5.28826 | opp_overlap 1043415 GAAGAGATAAAAAAA CGCCATC ACAA GATGGCG TTTTTTATGGGATTT Shewmr4_0891 1043796 - 1043479 - | hypothetical protein Shewmr4_0892 1044192 - 1044626 + | hypothetical protein TERM 1194 1044707 - 1044696 - f 70 -7.2 -3.90588 | CATTTGCGAATCAAA GCGC CGAG GCGC AACATGGCGCAGCAT TERM 1195 1045449 - 1045430 - g 76 -3.4 -5.15634 | CATGCTATCAAAAAA GGGGCGGT GATT ACTGCGCC ACAGCATCAAATTCT Shewmr4_0893 1044926 - 1045585 + | uracil-DNA glycosylase TERM 1196 1045609 - 1045647 + T 100 -16.2 -3.92075 | opp_overlap 1045619, overlap 1045610 1045619 GGATAAAGAACCTTA AAAACAAAAAGGCCTTGC TTA GCAAGGCCTTTTTGTTGG TTTATCGCTGCCAAT TERM 1197 1045610 - 1045646 + T 100 -19.7 -2.94924 | opp_overlap 1045619, overlap 1045609 1045619 GATAAAGAACCTTAA AAACAAAAAGGCCTTGC TTA GCAAGGCCTTTTTGTTG GTTTATCGCTGCCAA TERM 1198 1045619 - 1045637 + T 100 -14.6 -5.25906 | opp_overlap 1045619, overlap 1045610 1045609 CCTTAAAAACAAAAA GGCCTTGC TTA GCAAGGCC TTTTTGTTGGTTTAT TERM 1199 1045637 - 1045619 - T 100 -14.6 -5.61881 | opp_overlap 1045619 1045610 1045609 CCTTAAAAACAAAAA GGCCTTGC TTA GCAAGGCC TTTTTGTTGGTTTAT Shewmr4_0894 1046657 - 1045662 - | trans-hexaprenyltranstransferase TERM 1200 1045946 - 1045956 + g 73 -5.4 -4.67755 | overlap 1045936 TACCTTCGGCGAGAT CATC ACC GATG TTTTTACCTAACTCT TERM 1201 1046966 - 1046940 - g 75 -9.4 -3.90922 | opp_overlap 1046937 1046942, overlap 1046926 1046942 AGTGGTGGTAAACAA CACCGTGTAGCC CCT GGCCACACAGTT CGTTTAGAAAAATTA TERM 1202 1046964 - 1046942 - g 82 -12 -3.54488 | opp_overlap 1046942 1046937, overlap 1046940 TGGTGGTAAACAACA CCGTGTAGCC CCT GGCCACACAG TTCGTTTAGAAAAAT TERM 1203 1047060 - 1047045 - g 70 -4.6 -4.59773 | opp_overlap 1047047, overlap 1047047 GCTGACGGTGAAAAA GTGCAC GTTG GTGCTC CTTTAGTAGCTGGCG rplU 1046907 - 1047218 + | 50S ribosomal protein L21 rpmA 1047233 - 1047487 + | 50S ribosomal protein L27 TERM 1204 1047507 - 1047538 + F 100 -11.6 -5.39755 | gap 1, opp_overlap 1047514, overlap 1047514 CGAGTCTAGCTTATA CTGTAAAGCCCCGCC ATT GGTGGGGCTTT-CTG TTTTTTATGCTTCTA TERM 1205 1047514 - 1047532 + F 100 -13.8 -4.68607 | opp_overlap 1047514, overlap 1047507 AGCTTATACTGTAAA GCCCCGCC ATT GGTGGGGC TTTCTGTTTTTTATG TERM 1206 1047532 - 1047514 - f 90 -11.6 -3.63805 | opp_overlap 1047514 1047507 AGCTTATACTGTAAA GCCCCGCC ATT GGTGGGGC TTTCTGTTTTTTATG TERM 1207 1047926 - 1047915 - g 71 -7.2 -4.08216 | opp_overlap 1047915 TGAGCGCGGTGAAAA CGGC CGTG GCCG TGATTGTACTGGTCA TERM 1208 1048016 - 1048001 - g 80 -10.4 -3.79747 | opp_overlap 1047999 CCATTGATGATGAAA CCGAGG AAGT CCTCGG CGATTTAACCACCCA obgE 1047700 - 1048866 + | GTPase ObgE TERM 1209 1049367 - 1049378 + G 76 -5.8 -4.59376 | GGTGCGCCTTGCGAT TGCC AAGC GGCA TTTTAATTTGCTGGT Shewmr4_0898 1048894 - 1049655 + | hypothetical protein Shewmr4_0899 1049652 - 1050125 + | hypothetical protein Shewmr4_0900 1050148 - 1050630 + | dihydrofolate reductase Shewmr4_0901 1050833 - 1051246 + | hypothetical protein TERM 1210 1051321 - 1051303 - T 100 -13.2 -4.72333 | opp_overlap 1051303 AATGATAGTTAAAAA TGCCGAAC TGA GTTCGGCA TTTTTTATGGGCGTC TERM 1211 1051303 - 1051321 + T 100 -13.2 -5.252 | opp_overlap 1051303 AATGATAGTTAAAAA TGCCGAAC TGA GTTCGGCA TTTTTTATGGGCGTC TERM 1212 1051474 - 1051457 - T 100 -10.5 -4.94058 | GCAAGCCAAAGAAAA GGGCCGC AATT GCGACCC TACTGATACCCTGAG Shewmr4_0902 1053518 - 1051497 - | methyl-accepting chemotaxis sensory transducer TERM 1213 1053607 - 1053621 + r 76 -2.8 -5.32608 | TATCGACCACTCTCG GGCTTA GTT TAACCC TTTTTTAACTTTTTT apaH 1054439 - 1053615 - | diadenosine tetraphosphatase apaG 1054841 - 1054461 - | ApaG TERM 1214 1054880 - 1054863 - R 71 -9.1 -3.26444 | overlap 1054859 CCCTTTAATAAGATA GGGCACC CTAA AGTGCCC ATCAAACTGATATTG ksgA 1055703 - 1054897 - | dimethyladenosine transferase TERM 1215 1055091 - 1055106 + g 70 -3.2 -4.87665 | GCAGTACATTCACAT CCTTAC AAGG GAAAGG TTTTTCTGCATAGGG TERM 1216 1055710 - 1055721 + r 71 -3 -5.03314 | GCTACTCATTAATAT CTAA TCGT TTAG TTTTTTGAGGATAAC Shewmr4_0906 1056704 - 1055718 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1217 1056049 - 1056063 + g 73 -11.4 -3.02263 | ACATCGATTTCTTCC CGGCCA AGA TGGCCG TCTTCACCCGCGTGT TERM 1218 1056638 - 1056602 - G 100 -15.9 -3.87815 | overlap 1056609 CGGGATCCGCACAAA CGACTAACTCAGCAGGC CAA GCCTGCTGAGCGAGTTG CACGACTAAATCGGG TERM 1219 1056631 - 1056609 - G 100 -17.8 -3.35467 | overlap 1056602 CGCACAAACGACTAA CTCAGCAGGC CAA GCCTGCTGAG CGAGTTGCACGACTA Shewmr4_0907 1058015 - 1056711 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 1220 1057239 - 1057253 + g 76 -4.2 -5.01732 | opp_overlap 1057220 1057219, overlap 1057241 GCCACTCTTGATTGG GCCGAT AAT ATCGCC TTTTTTCGCACCGTT TERM 1221 1057591 - 1057603 + g 74 -7.7 -4.15788 | TGAATACGTTGGATT TCACC CAG GGTGA TTTCTTCACGCAGTT TERM 1222 1058189 - 1058201 + r 70 -7.7 -3.68222 | TTCATTAACCTGTTT GGACT CTC AGTCC TTGTTGAGGTTCAGC Shewmr4_0908 1060533 - 1058236 - | organic solvent tolerance protein Shewmr4_0909 1060649 - 1061740 + | aminoglycoside phosphotransferase TERM 1223 1062030 - 1062048 + G 74 -4.5 -4.77438 | ATCTTTGCTGACTGA CGGCG ACTCGGATG CGCCG TTTTTAGTGCTCAAT Shewmr4_0910 1061737 - 1062405 + | nucleotidyl transferase djlA 1062515 - 1063303 + | DNA-J like membrane chaperone protein TERM 1224 1063900 - 1063911 + G 84 -4.4 -5.31275 | CGACCTTTATTGACA GTGA CAGC TCAC TTTTTTGTAATGAAG Shewmr4_0912 1063359 - 1064003 + | hypothetical protein TERM 1225 1064792 - 1064771 - g 70 -11.5 -2.52464 | opp_overlap 1064791 CGGCGGCTTAATCGA TGAGGCCGC GCTT GCGGCCGCA TTAACGCAGGGCAAA Shewmr4_0913 1064049 - 1065002 + | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Shewmr4_0914 1066409 - 1065396 - | transposase IS116/IS110/IS902 family protein TERM 1226 1066752 - 1066740 - R 70 -7.7 -3.57561 | GGGTAACGCCTCAAA CACCA GTT TGGTG AAGATGGCGGTTATT Shewmr4_0915 1067251 - 1066826 - | hypothetical protein TERM 1227 1067262 - 1067300 + H 75 -8.9 -3.62522 | gap 1, overlap 1067267 CTCATGGTGCTTAAC GCTTATTCAGCCGA-CGC GTCA GCGGTCGGCTGAATTGAC TTGTTAGAGAGCTTC TERM 1228 1067267 - 1067295 + H 100 -14 -3.28745 | gap 1, overlap 1067262 GGTGCTTAACGCTTA TTCAGCCGA-CGC GTCA GCGGTCGGCTGAA TTGACTTGTTAGAGA Shewmr4_0916 1068976 - 1070433 + | OmpA/MotB domain-containing protein TERM 1229 1070477 - 1070496 + T 100 -13.6 -5.1485 | opp_overlap 1070477 TCGTTCCATCTAAAA CGCCTGAG ATGA CTCAGGCG TTTTTATCTTCATTG TERM 1230 1070496 - 1070477 - T 100 -13.6 -4.18018 | opp_overlap 1070477 TCGTTCCATCTAAAA CGCCTGAG ATGA CTCAGGCG TTTTTATCTTCATTG Shewmr4_0917 1071321 - 1070596 - | pseudouridine synthase, Rsu TERM 1231 1071139 - 1071151 + g 74 -6.9 -4.34402 | opp_overlap 1071129 GGAAAGCGCTTCGAC GCCCG ATA TGGGC TTTTCATCTAAGCAG Shewmr4_0918 1072025 - 1071333 - | hypothetical protein TERM 1232 1071901 - 1071871 - G 70 -4.8 -4.72497 | gap 1 TAGTCACCAAGAAAA TCGGCAC-GCA TAAACAGGGC TGCAGTGCCGA CGACTTGATATTCGG TERM 1233 1072163 - 1072191 + r 89 -11.8 -3.30124 | opp_overlap 1072165 1072169, overlap 1072165 1072169 CCTTAGGCAGATAAA AACAAAGGGAGC GAATG GCTCCCTTTGTG TTATCGACAGTCGAA TERM 1234 1072189 - 1072165 - R 100 -14.4 -4.99035 | opp_overlap 1072165 1072163 1072169, overlap 1072169 TTAGGCAGATAAAAA CAAAGGGAGC GAATG GCTCCCTTTG TGTTATCGACAGTCG TERM 1235 1072165 - 1072189 + r 100 -14.4 -3.21924 | opp_overlap 1072165 1072169, overlap 1072163 1072169 TTAGGCAGATAAAAA CAAAGGGAGC GAATG GCTCCCTTTG TGTTATCGACAGTCG TERM 1236 1072185 - 1072169 - R 100 -9.4 -5.01422 | opp_overlap 1072169 1072165 1072163, overlap 1072165 GCAGATAAAAACAAA GGGAGC GAATG GCTCCC TTTGTGTTATCGACA TERM 1237 1072169 - 1072185 + r 88 -9.4 -4.27117 | opp_overlap 1072165 1072169, overlap 1072165 1072163 GCAGATAAAAACAAA GGGAGC GAATG GCTCCC TTTGTGTTATCGACA Shewmr4_0919 1073549 - 1072212 - | Na+/H+ antiporter NhaC TERM 1238 1073328 - 1073345 + g 83 -2.7 -5.50723 | opp_overlap 1073329, overlap 1073329 ACCGCCGATAAAGGT ATCAATC GCTT GATTGAG TTTTTGTTTTGATAA TERM 1239 1074265 - 1074251 - g 70 -4.2 -4.74801 | overlap 1074252 1074255 GAACTCTATCAAAAA GTGACG TTG CGTAAC GACAAAGGCCAAGGC Shewmr4_0920 1074098 - 1075006 + | hypothetical protein Shewmr4_0921 1075086 - 1075637 + | FMN-binding domain-containing protein TERM 1240 1075742 - 1075758 + G 90 -9.4 -4.64766 | GAGTCAGCCCTTCAA GCCGCT ATAAC AGCGGC TTTTTCGCGTGTGGC Shewmr4_0922 1075637 - 1076485 + | ApbE family protein, putative TERM 1241 1076804 - 1076793 - g 73 -3 -5.00616 | opp_overlap 1076798 GGCTGGCGTAAAAAA CTTA ACCA TAAG AGTGGATTAGTGATA Shewmr4_0923 1076541 - 1077008 + | hypothetical protein TERM 1242 1077007 - 1077037 + T 90 -11.4 -3.65351 | opp_overlap 1076997 1077011 1077013, overlap 1077009 GACAACGTATCCTCT AACAGATAAAAAAG AGT CTTTTTTATCTGTC TTTGAGTAACGCTAA TERM 1243 1077009 - 1077035 + T 100 -14 -3.40775 | opp_overlap 1076997 1077011 1077013, overlap 1077007 CAACGTATCCTCTAA CAGATAAAAAAG AGT CTTTTTTATCTG TCTTTGAGTAACGCT TERM 1244 1077033 - 1077011 - T 79 -10.8 -3.03243 | opp_overlap 1077009 1077007, overlap 1076997 1077013 ACGTATCCTCTAACA GATAAAAAAG AGT CTTTTTTATC TGTCTTTGAGTAACG Shewmr4_0924 1078713 - 1077082 - | methyl-accepting chemotaxis sensory transducer TERM 1245 1077504 - 1077553 + g 70 -9.2 -3.59402 | gap 1 CCGCAAAGCCCCGTC CTTGCTCACCCGCACGGGCCGCC TCAAT GGCGGCGT-TGAGGGCGAGTAGG TTAGTTTGCTCTGCA TERM 1246 1078841 - 1078822 - R 100 -13.6 -4.99568 | CAACATTAAAGAAAA CGCCCCAA GATT TTGGGGCG TTGAGGAGAGAGATT Shewmr4_0925 1079746 - 1078856 - | hypothetical protein TERM 1247 1079000 - 1078982 - G 88 -14.6 -3.45945 | overlap 1078995 TTCATTCAGAATGAA CGCGGCTA AGA TAGCCGCG AGGATCGGCATCAAA TERM 1248 1079042 - 1079026 - G 72 -3.7 -4.75309 | TCAAATTGAAGAAAA TGCTG GTTTGCT CAGCA CCCAACTTGCTGATG Shewmr4_0926 1079954 - 1080733 + | AraC family transcriptional regulator TERM 1249 1080763 - 1080738 - T 100 -16.9 -5.25803 | opp_overlap 1080740 AACTGGGATAAAAAA GAGGGCGCGGT AGTC ACCACGCCCTC TTACAAATAAAGAGA TERM 1250 1080740 - 1080761 + T 83 -11.5 -3.04144 | opp_overlap 1080738 CTGGGATAAAAAAGA GGGCGCGGT AGTC ACCACGCCC TCTTACAAATAAAGA TERM 1251 1080868 - 1080880 + T 76 -2.6 -5.34309 | TTAAGGTTTTCATCG GCGG TTTTT TCGC TTTTTCTTTACTCAT TERM 1252 1081031 - 1081004 - T 72 -9.4 -3.1355 | overlap 1081010 CTTACGGATAGTCAA TTTAAATTAACC TTTC GGCTAATTTAAA CCATAAAAAGCGCTA Shewmr4_0927 1081687 - 1081301 - | GreA/GreB family elongation factor TERM 1253 1082145 - 1082128 - H 80 -2.7 -5.45726 | CAGATGCGAAAAAAA CATTTAG ACTT CTAGATG TCCATCTGTTAGCTT TERM 1254 1083288 - 1083276 - g 78 -4.1 -5.08011 | AAAATTGCCAAAAAA TCACC GGC GGTAA AGCCTCTGGGATCAT Shewmr4_0928 1082285 - 1083577 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 1255 1083593 - 1083622 + T 93 -13.7 -2.86676 | opp_overlap 1083598, overlap 1083598 GCCTCTAATCCCATC AAAAAGGCCGCTA TTGT TAGCGGCCTTTTA CTTTGCATTACTGGC TERM 1256 1083598 - 1083617 + T 100 -13.6 -4.5852 | opp_overlap 1083598, overlap 1083593 TAATCCCATCAAAAA GGCCGCTA TTGT TAGCGGCC TTTTACTTTGCATTA TERM 1257 1083617 - 1083598 - T 100 -13.6 -4.74801 | opp_overlap 1083598 1083593 TAATCCCATCAAAAA GGCCGCTA TTGT TAGCGGCC TTTTACTTTGCATTA Shewmr4_0929 1086787 - 1083641 - | hypothetical protein TERM 1258 1085165 - 1085175 + g 70 -8.2 -3.72893 | CGGGAACCCAAGTGC CGCC ATG GGCG TTTGCTCGCCAAGTC TERM 1259 1086981 - 1086943 - R 78 -9.8 -3.48718 | gap 1, opp_overlap 1086950, overlap 1086945 1086950 TGGAATGAAAAGAGA GAGCAAAGATAGCGCCA TTATTT TGGC-CTATCTTTGCTG AGCTAAAGCGGTTAT TERM 1260 1086979 - 1086945 - R 95 -12.4 -3.30572 | gap 1, opp_overlap 1086950, overlap 1086943 1086950 GAATGAAAAGAGAGA GCAAAGATAGCGCCA TTATTT TGGC-CTATCTTTGC TGAGCTAAAGCGGTT Shewmr4_0930 1088126 - 1086993 - | rRNA (guanine-N(2)-)-methyltransferase Shewmr4_0931 1088304 - 1088963 + | DNA-N1-methyladenine dioxygenase Shewmr4_0932 1089098 - 1089418 + | transcriptional regulator BolA TERM 1261 1089441 - 1089459 + F 100 -13.2 -5.80951 | opp_overlap 1089441 CCTGATTTTATAAAA GCCACGTT ATC AACGTGGC TTTTTTGTTTTAGGT TERM 1262 1089459 - 1089441 - f 100 -13.2 -4.4009 | opp_overlap 1089441 CCTGATTTTATAAAA GCCACGTT ATC AACGTGGC TTTTTTGTTTTAGGT TERM 1263 1090383 - 1090395 + G 85 -7.7 -4.7497 | CTGGCATGAGCCTGG CTCCA ATA TGGAG TTTTTGATCAATAAA Shewmr4_0933 1089622 - 1090737 + | TRAP dicarboxylate transporter- DctP subunit Shewmr4_0934 1090893 - 1091402 + | S-ribosylhomocysteinase TERM 1264 1091461 - 1091474 + F 100 -8.1 -6.09133 | opp_overlap 1091461 GTTAGCGTCAAGAAA GCGAC ATTC GTCGC TTTTTTTTTCGAGTA TERM 1265 1091474 - 1091461 - f 76 -8.1 -4.16842 | opp_overlap 1091461 GTTAGCGTCAAGAAA GCGAC ATTC GTCGC TTTTTTTTTCGAGTA TERM 1266 1091588 - 1091599 + G 71 -7.2 -3.97308 | overlap 1091582 TTGTGATGTCGCTGA CCGC GCTA GCGG TTTCCTGTGTTTACA Shewmr4_0935 1091557 - 1093608 + | TonB-dependent receptor Shewmr4_0936 1094012 - 1095346 + | Na(+)-translocating NADH-quinone reductase subunit A Shewmr4_0937 1095346 - 1096545 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 1267 1096557 - 1096570 + G 71 -6.7 -4.12857 | opp_overlap 1096556 CTAGTAATAAAGATT CGTTC GGCA GAACG TTATTTATCGTCGTT TERM 1268 1096667 - 1096657 - g 71 -5.4 -4.56093 | overlap 1096661 1096662 AACTCAAGCAGAAAA CAAG CTG CTTG ATAAGCAAAAGTACA Shewmr4_0938 1096538 - 1097326 + | Na(+)-translocating NADH-quinone reductase subunit C Shewmr4_0939 1097326 - 1097958 + | Na(+)-translocating NADH-quinone reductase subunit D Shewmr4_0940 1097965 - 1098573 + | Na(+)-translocating NADH-quinone reductase subunit E TERM 1269 1099862 - 1099849 - g 74 -6.7 -4.4261 | overlap 1099843 TGTCGAAGACGAAAA CATCC TGTT GGATG ACTTCGGCGGCTAAT Shewmr4_0941 1098620 - 1099876 + | Na(+)-translocating NADH-quinone reductase subunit F TERM 1270 1099902 - 1099935 + F 100 -11.9 -4.66537 | gap 1, opp_overlap 1099900 1099902 CCCAAGGTGAGAAGA GTTGCAGATGTGGAGT AAA GCTCT-CATCTGCAAC TTTTGTATTAAAGGG TERM 1271 1099935 - 1099902 - f 71 -9 -3.25192 | gap 1, opp_overlap 1099902, overlap 1099900 CCCAAGGTGAGAAGA GTTGCAGATGTGGAG TAAAG CTCT-CATCTGCAAC TTTTGTATTAAAGGG TERM 1272 1100042 - 1100064 + G 100 -9.8 -5.63517 | AGCATTCAGTGAACT GGCTGGTCCT TGT AGGTCTAGCC TTTTTTATTTCAGCC Shewmr4_0942 1099909 - 1101033 + | ApbE family lipoprotein Shewmr4_0943 1101045 - 1101269 + | hypothetical protein TERM 1273 1101289 - 1101307 + F 100 -13.2 -5.49729 | opp_overlap 1101289 CCGCTTCAACTGAAA TAGCCTCC TCT GGAGGCTA TTTTTTTACCTCGTT TERM 1274 1101307 - 1101289 - f 100 -13.2 -3.75153 | opp_overlap 1101289 CCGCTTCAACTGAAA TAGCCTCC TCT GGAGGCTA TTTTTTTACCTCGTT Shewmr4_0944 1101644 - 1102117 + | bacterioferritin Shewmr4_0945 1102127 - 1102594 + | bacterioferritin TERM 1275 1102651 - 1102621 - f 100 -19.2 -2.73681 | opp_overlap 1102621 1102625, overlap 1102625 TACGCAGCTTAAGCA CAAAGGCCAGTCAC TAA ATGACTGGCCTTTG TTTTTGGATTTTGAG TERM 1276 1102621 - 1102651 + F 100 -18.5 -4.87318 | opp_overlap 1102621 1102625, overlap 1102625 TACGCAGCTTAAGCA CAAAGGCCAGTCA CTAAA TGACTGGCCTTTG TTTTTGGATTTTGAG TERM 1277 1102625 - 1102647 + F 100 -13.5 -4.92828 | opp_overlap 1102625 1102621, overlap 1102621 CAGCTTAAGCACAAA GGCCAGTCA CTAAA TGACTGGCC TTTGTTTTTGGATTT TERM 1278 1102647 - 1102625 - f 100 -14.2 -4.0616 | opp_overlap 1102621 1102625, overlap 1102621 CAGCTTAAGCACAAA GGCCAGTCAC TAA ATGACTGGCC TTTGTTTTTGGATTT Shewmr4_0946 1102894 - 1104897 + | methyl-accepting chemotaxis sensory transducer TERM 1279 1104918 - 1104935 + F 100 -12.7 -5.04249 | opp_overlap 1104918 1104914 AACGTTGCAAATCAA GGGAGCC TTAG GGCTCCC TTTGTTTTTTGAGCG TERM 1280 1104935 - 1104918 - f 100 -12.7 -3.51976 | opp_overlap 1104918, overlap 1104914 AACGTTGCAAATCAA GGGAGCC TTAG GGCTCCC TTTGTTTTTTGAGCG Shewmr4_0947 1105048 - 1106127 + | DNA polymerase IV TERM 1281 1106238 - 1106264 + T 100 -9.3 -4.58585 | opp_overlap 1106238 TAGAAGCCACAAAAA GGCCGCATTGG TAAAC CCTCTGCGGCC TTTGTTATTTAAGTC TERM 1282 1106264 - 1106238 - T 100 -9.3 -4.93318 | opp_overlap 1106238 TAGAAGCCACAAAAA GGCCGCATTGG TAAAC CCTCTGCGGCC TTTGTTATTTAAGTC Shewmr4_0948 1107770 - 1106307 - | M20C family Xaa-His dipeptidase TERM 1283 1107432 - 1107452 + g 71 -7.5 -4.09685 | AATACCATTGTCGGC GCCTAAGGT TGT GCCTTTGGC TTTTACCCAGTCACC Shewmr4_0949 1107989 - 1109527 + | peptidase M17, leucyl aminopeptidase domain-containing protein TERM 1284 1109584 - 1109597 + F 71 -3.1 -5.00895 | overlap 1109547 CTTATTATAAGGTTA CAGGA TTAT TTCTG TTTTTATGTGATACA TERM 1285 1110154 - 1110172 + F 100 -14.6 -5.91981 | CTTGAAATATGTCTT GCCTGCTC ATT GAGCAGGC TTTTTTTTAGCTTTT TERM 1286 1110593 - 1110567 - g 80 -4.6 -5.19916 | gap 1 AAAATATCGAAAAAA TCACTGTG-AT GGGTAA ATACACAGTGA GTCGTAATATTGATA Shewmr4_0950 1110440 - 1112611 + | TonB-dependent siderophore receptor TERM 1287 1112623 - 1112674 + F 95 -13 -3.08966 | opp_overlap 1112637, overlap 1112637 TTAAGCATTTTACCC GTTGAACTCAAAAAGCCGGCGCCC TTAA GAGCGTCGGCTTTTTGCTATCGAC TTCAATCCCATTTGC TERM 1288 1112637 - 1112660 + F 100 -11.6 -4.80882 | opp_overlap 1112637, overlap 1112623 CGTTGAACTCAAAAA GCCGGCGCCC TTAA GAGCGTCGGC TTTTTGCTATCGACT TERM 1289 1112660 - 1112637 - f 100 -11.6 -4.74103 | opp_overlap 1112623 1112637 CGTTGAACTCAAAAA GCCGGCGCCC TTAA GAGCGTCGGC TTTTTGCTATCGACT TERM 1290 1113019 - 1113007 - f 100 -7.7 -5.2853 | opp_overlap 1113006 TACTTAAAAAGAAAA GGAAC CCA GTTCC ATGTTAGAAAAGCTG Shewmr4_0951 1113020 - 1114309 + | xanthine/uracil/vitamin C permease TERM 1291 1114347 - 1114367 + F 88 -6.8 -5.24531 | CGGGCTATTTTTTGA GGGGCATC TAATC GATGGCCC TTTTTTATGCGCGAT TERM 1292 1115472 - 1115458 - g 76 -5.7 -4.72272 | overlap 1115468 TTGGTTGACCAAAAA GGCAA AATCA TTGCC AGAGGCATCACCCGT Shewmr4_0952 1114486 - 1115604 + | gamma-glutamyl kinase TERM 1293 1116840 - 1116811 - g 73 -2.9 -5.04175 | gap 1 GTAAGCACACAAAAA CTCCATGCCC GCGGTCCTATG GGGC-TGGAG GCGTTGACCACCTAT proA 1115617 - 1116894 + | gamma-glutamyl phosphate reductase TERM 1294 1116959 - 1116914 - T 100 -21.5 -4.39287 | opp_overlap 1116930, overlap 1116915 1116930 TTAAGTACACTAAAA GTCACCCATTAAAAAAGCCGC AATA GCGGCTTTTTTAATGGGTAAA TGGTGCGGTTAATGG TERM 1295 1116958 - 1116915 - T 100 -25 -3.22849 | opp_overlap 1116930, overlap 1116914 1116930 TAAGTACACTAAAAG TCACCCATTAAAAAAGCCGC AATA GCGGCTTTTTTAATGGGTAA ATGGTGCGGTTAATG TERM 1296 1116930 - 1116943 + T 100 -9.5 -5.1675 | opp_overlap 1116915 1116914 1116930 TCACCCATTAAAAAA GCCGC AATA GCGGC TTTTTTAATGGGTAA TERM 1297 1116943 - 1116930 - T 100 -9.5 -5.1675 | opp_overlap 1116930, overlap 1116915 1116914 TCACCCATTAAAAAA GCCGC AATA GCGGC TTTTTTAATGGGTAA Shewmr4_0954 1117270 - 1116968 - | hypothetical protein Shewmr4_0955 1117871 - 1117395 - | ybaK/ebsC protein Shewmr4_0956 1118925 - 1118005 - | hypothetical protein TERM 1298 1118196 - 1118210 + g 70 -4.9 -4.74801 | AGGTACTGATATTGG CCGTG CGAGT CGCGG TTTTTAGTGCCATTA TERM 1299 1118731 - 1118751 + g 80 -3.3 -5.24129 | gap 1, overlap 1118723 1118730 1118729 CGGGCGACGTAGGAG CTG-CGCT TTAAGC AGCGGCAG TTTTTTCTGCCAAGC TERM 1300 1119688 - 1119674 - g 77 -10 -3.794 | CGTCAAGCCACTAAA GATGCG GGT CGCATC GCAGGTCTTGAAGTT Shewmr4_0957 1119212 - 1121131 + | chaperone protein DnaK TERM 1301 1121142 - 1121158 + F 70 -8.1 -3.64162 | opp_overlap 1121135 1121133 AATAATCATTTGTCC TCAATCA AAT TGATTGA TTTCAAATAGTTAAT TERM 1302 1121181 - 1121209 + F 100 -15.4 -3.37612 | gap 1 TAGTTAATTTCTAGG CGGGCGTTACGGG GAAA CCC-TAACGCCCG TTCGTTCAACTTAAG Shewmr4_0958 1121242 - 1122375 + | chaperone protein DnaJ TERM 1303 1122430 - 1122456 + F 100 -11.7 -4.47217 | gap 1, opp_overlap 1122430 CACTAGATAAATAAA GCCCTGTAATGG TTTA CC-TTACAGGGC TTTTCATTGATGATT TERM 1304 1122456 - 1122430 - f 100 -11.7 -4.64048 | gap 1, opp_overlap 1122430 CACTAGATAAATAAA GCCCTGTAATGG TTTA CC-TTACAGGGC TTTTCATTGATGATT TERM 1305 1123041 - 1123021 - g 74 -4.8 -4.80178 | TACCAAGGAATAAAA CAACTGAT TATAT ATCAATTG AAAAGGAGGATGGTT Shewmr4_0959 1122477 - 1123364 + | hypothetical protein TERM 1306 1123536 - 1123524 - f 95 -7.7 -4.99638 | ATACGCAGATAAAAA TGTCG TGG CGACA TCATGGATGATGGCG TERM 1307 1123656 - 1123693 + F 75 -10.6 -2.74269 | opp_overlap 1123663, overlap 1123655 1123652 1123659 1123663 AGGGGCGTCTTGGAG CATCCAAGGAGGATTG GACGAG CAGTCCTCCTTGGTCG ATTCTCTAATATAAA TERM 1308 1123659 - 1123690 + F 100 -15.3 -2.64318 | opp_overlap 1123663, overlap 1123656 1123655 1123652 1123663 GGCGTCTTGGAGCAT CCAAGGAGGATTG GACGAG CAGTCCTCCTTGG TCGATTCTCTAATAT TERM 1309 1123663 - 1123686 + F 71 -8.9 -3.24425 | opp_overlap 1123663, overlap 1123659 1123656 1123655 1123652 TCTTGGAGCATCCAA GGAGGATTG GACGAG CAGTCCTCC TTGGTCGATTCTCTA TERM 1310 1123766 - 1123750 - f 73 -7.3 -4.13945 | ATTTTGATTTGAAAA TCCAAAC GAA GCTTGGA CATTGAATTATTCTC TERM 1311 1124294 - 1124272 - g 71 -10.5 -3.09516 | opp_overlap 1124283 TGGCGCAGCAGGTAA CGACAGCGC TGCAC GCGCTGGCG AGTAAGTTATCGTCT Shewmr4_0960 1123923 - 1125278 + | DEAD/DEAH box helicase domain-containing protein Shewmr4_0961 1125402 - 1125995 + | GCN5-related N-acetyltransferase TERM 1312 1126221 - 1126209 - g 70 -10.5 -2.87051 | overlap 1126208 GCGCGACCACTAAAT CGCCC ACG GGGCG TGGCCAAACCTTGCT Shewmr4_0962 1126136 - 1126945 + | peptidase M48, Ste24p Shewmr4_0963 1127138 - 1127755 + | peptidylprolyl isomerase, FKBP-type TERM 1313 1127787 - 1127767 - f 84 -11.2 -3.66874 | opp_overlap 1127767 CTAATGTGATCGAAA CGCCTAAG CCAGT CTTAGGCG TTTTTGTATGGAAGT TERM 1314 1127767 - 1127787 + F 100 -11.2 -4.9725 | opp_overlap 1127767 CTAATGTGATCGAAA CGCCTAAG CCAGT CTTAGGCG TTTTTGTATGGAAGT TERM 1315 1127978 - 1127995 + G 74 -11.3 -3.14944 | GTGGATGCGGGCGAG CTTGCCG GTGT CGGCAAG TTAAATGTCCTAGTG TERM 1316 1128327 - 1128317 - g 83 -3.2 -5.4492 | overlap 1128319 1128320 CACAGACATAAAAAA GACG CGC CATC TGGCACTGCGCTAAA Shewmr4_0964 1127828 - 1128640 + | dihydrodipicolinate reductase TERM 1317 1128668 - 1128643 - f 86 -9.1 -4.41047 | opp_overlap 1128650, overlap 1128650 AGGTTTGAATTAAAA TAAAAAACGCC ATTT GGCGTTTTTTT TTGCACTCAGATGCC TERM 1318 1128661 - 1128650 - f 100 -7.2 -5.85244 | opp_overlap 1128650, overlap 1128643 AATTAAAATAAAAAA CGCC ATTT GGCG TTTTTTTTTGCACTC TERM 1319 1128650 - 1128661 + F 100 -7.2 -6.09133 | opp_overlap 1128650 1128643 AATTAAAATAAAAAA CGCC ATTT GGCG TTTTTTTTTGCACTC Shewmr4_0965 1128808 - 1129968 + | carbamoyl phosphate synthase small subunit TERM 1320 1133160 - 1133127 - g 79 -11.7 -3.23692 | TACCACGACCATGAA CGCAGCATTCGCCAC TTGT ATGGCACACGCTGCG GACGACCGCACTAAC carB 1129996 - 1133220 + | carbamoyl phosphate synthase large subunit TERM 1321 1133267 - 1133243 - T 100 -18.7 -4.25104 | opp_overlap 1133243 CTTCTGTCATCAAAA GGCCGGATAAC CTA GTTATCCGGCC TTTGTTTTTGTGCTC TERM 1322 1133243 - 1133267 + T 100 -18.7 -4.98911 | opp_overlap 1133243 CTTCTGTCATCAAAA GGCCGGATAAC CTA GTTATCCGGCC TTTGTTTTTGTGCTC Shewmr4_0967 1134069 - 1133302 - | extracellular solute-binding protein TERM 1323 1134280 - 1134299 + r 71 -9.2 -2.94416 | opp_overlap 1134281, overlap 1134283 GACTTAGCAATAAAA AGAGCGCC CAAG GGCGCTCA TCTCTGCTGACACTC TERM 1324 1134298 - 1134281 - R 100 -12.7 -5.14163 | opp_overlap 1134280 1134283 ACTTAGCAATAAAAA GAGCGCC CAAG GGCGCTC ATCTCTGCTGACACT Shewmr4_0968 1135408 - 1134320 - | methyl-accepting chemotaxis sensory transducer TERM 1325 1134679 - 1134663 - G 91 -6.5 -5.08824 | opp_overlap 1134665, overlap 1134665 GTGGTATTTAAAAAA GATGCGG TCG CCGCATT GTGGATCACCTGCTG TERM 1326 1134677 - 1134665 - G 79 -9.1 -4.17608 | opp_overlap 1134665, overlap 1134663 GGTATTTAAAAAAGA TGCGG TCG CCGCA TTGTGGATCACCTGC TERM 1327 1135283 - 1135307 + g 91 -7.9 -5.1615 | gap 1 ACGGGACTGTTGCTG CATGGCCTCG TTTTCT CG-GGCCATG TTTTTTAACTCTTCA TERM 1328 1135454 - 1135471 + H 71 -9.1 -3.25823 | ATGGCAGCAGCTTGT TCGCCCG TTAA TGGGCGA TTCCTGTGAGGCAGG TERM 1329 1136635 - 1136647 + G 75 -10.5 -3.38072 | GACCATGCAGCGGGG CGCCG AGG CGGCG TTGCTGTTCCATGCC Shewmr4_0969 1135997 - 1137130 + | endonuclease/exonuclease/phosphatase Shewmr4_0970 1137986 - 1137171 - | hypothetical protein TERM 1330 1137546 - 1137569 + g 80 -11.8 -3.46285 | gap 1, opp_overlap 1137543, overlap 1137541 GGCGGGTAAGGATTG CAGCGCCGCAA AAC TTGCG-CGCTG TTCATCTTTAGCATC Shewmr4_0971 1138864 - 1137983 - | hypothetical protein TERM 1331 1138697 - 1138666 - G 79 -7.2 -4.57482 | overlap 1138667 CGATGGATAAAGAAA CGCCGTGCATCACC AGCG GATAACGCTCGGCA ATCTCACTCAGGTAA TERM 1332 1138840 - 1138830 - G 71 -5.4 -4.55128 | AGCCCTAAACCAAAA CCTA GGG TAGG GTGAGTGAGACGCTG Shewmr4_0972 1139400 - 1138948 - | putative lipoprotein TERM 1333 1139216 - 1139234 + g 71 -6.6 -4.17425 | overlap 1139203 1139217 CAGCTGGCGTGTCCG GCGCAGGC ATT GTCTGCGG TTTTACAGTCGTTAT TERM 1334 1141010 - 1141022 + G 82 -7.7 -4.65895 | overlap 1141014 ACCCGATTGGTAGTG CCTTC CCT GAAGG TTTTTACCTCAAGGG Shewmr4_0973 1139869 - 1141059 + | SAM-dependent methyltransferase TERM 1335 1141126 - 1141105 - T 100 -10.1 -5.252 | opp_overlap 1141105 GAGGGTCATAAAAAA TGCCGGTGC AGTT GCACTGGCA TTTTTGTTTCTCGCA TERM 1336 1141105 - 1141126 + T 100 -12.3 -5.38054 | opp_overlap 1141105 GAGGGTCATAAAAAA TGCCGGTGC AGTT GCACTGGCA TTTTTGTTTCTCGCA Shewmr4_0974 1141826 - 1141167 - | ribose-5-phosphate isomerase A Shewmr4_0975 1142122 - 1143048 + | hypothetical protein TERM 1337 1143354 - 1143338 - g 74 -2.2 -5.14563 | overlap 1143339 GGTTTCAGCAAAAAA TCGCCT TAACG ACGCGA TTAACCGATGCCGAG Shewmr4_0976 1143142 - 1144041 + | 3'-5' exonuclease Shewmr4_0977 1144085 - 1145053 + | hypothetical protein TERM 1338 1145473 - 1145442 - f 100 -10.2 -4.86731 | opp_overlap 1145445, overlap 1145445 CCCTGCCAAATAAAA CAACGGCTTGCATA GAAA TATGCGAGCCGTTT TATTTTGCGCGCGAT TERM 1339 1145470 - 1145445 - f 100 -11.9 -4.54026 | opp_overlap 1145445, overlap 1145442 TGCCAAATAAAACAA CGGCTTGCATA GAAA TATGCGAGCCG TTTTATTTTGCGCGC TERM 1340 1145445 - 1145470 + F 100 -14.1 -5.07652 | opp_overlap 1145445 1145442 TGCCAAATAAAACAA CGGCTTGCATA GAAA TATGCGAGCCG TTTTATTTTGCGCGC Shewmr4_0978 1145578 - 1145883 + | hypothetical protein TERM 1341 1145914 - 1145944 + F 86 -11.9 -3.04298 | overlap 1145911 TATTTCTCTTATTTT TCGAGCGCCTTAG CTTAA CTAAGGTGCCCGA TGCTGTTTATTTTTG TERM 1342 1147136 - 1147124 - g 70 -3.3 -4.75372 | opp_overlap 1147124 ATTATCGACTAAAAA CGGGA CTC TACCG TTATCGAGGCCAGAA Shewmr4_0979 1145944 - 1148118 + | TonB-dependent siderophore receptor TERM 1343 1148402 - 1148419 + G 70 -4.8 -4.72272 | gap 1, overlap 1148402 1148403 1148408 CGTGGCTATGGCGAA C-CGCGC TCTGC GCGCGAG TTTTTAATCAAGCGC Shewmr4_0980 1148108 - 1149313 + | hypothetical protein TERM 1344 1149638 - 1149613 - T 100 -11.9 -4.63932 | gap 1, opp_overlap 1149613 CACGCCCTAATAAAA TGGCCGAGC-GC GTG ACTGCTCGGCCA TTTGGCTTGGGGATG TERM 1345 1149613 - 1149638 + T 100 -12.6 -3.75629 | opp_overlap 1149613 CACGCCCTAATAAAA TGGCCGAGCG CGTGAC TGCTCGGCCA TTTGGCTTGGGGATG Shewmr4_0981 1150130 - 1149663 - | Ferritin, Dps family protein Shewmr4_0982 1150359 - 1150709 + | hypothetical protein Shewmr4_0983 1150807 - 1151259 + | SSU ribosomal protein S18P alanine acetyltransferase TERM 1346 1151240 - 1151261 + T 83 -8.8 -4.18494 | TTTTGATGGATTTAG CCTTAAGC GAAACG GCTTAAGG TTTTAGATGAAGATA TERM 1347 1151300 - 1151285 - T 100 -10.4 -6.35605 | opp_overlap 1151285 GAAGATAAAAAAAAA CAGCGC CTTA GCGCTG TTTTTTATGGGCTTA TERM 1348 1151285 - 1151300 + T 100 -10.4 -5.27923 | opp_overlap 1151285 GAAGATAAAAAAAAA CAGCGC CTTA GCGCTG TTTTTTATGGGCTTA Shewmr4_0984 1152293 - 1151328 - | lipoyl synthase Shewmr4_0985 1152943 - 1152290 - | lipoate-protein ligase B Shewmr4_0986 1153302 - 1153036 - | hypothetical protein TERM 1349 1153411 - 1153382 - R 100 -13.7 -4.57837 | opp_overlap 1153385, overlap 1153385 ATACTCCCCCAAAAA CAACTAAGCCACC CGAA GGTGGCTTAGTTT TTGTGATTCGGATTA TERM 1350 1153385 - 1153408 + r 100 -15.4 -4.98255 | opp_overlap 1153382 1153385 CTCCCCCAAAAACAA CTAAGCCACC CGAA GGTGGCTTAG TTTTTGTGATTCGGA TERM 1351 1153408 - 1153385 - R 100 -15.4 -4.40561 | opp_overlap 1153385, overlap 1153382 CTCCCCCAAAAACAA CTAAGCCACC CGAA GGTGGCTTAG TTTTTGTGATTCGGA Shewmr4_0987 1154599 - 1153424 - | penicillin-binding protein 6 Shewmr4_0988 1155586 - 1154744 - | rare lipoprotein A Shewmr4_0989 1156634 - 1155570 - | lytic murein transglycosylase B TERM 1352 1155767 - 1155748 - G 73 -9.2 -3.6682 | TGCGAGGCATCTAAA TCGCGGGC GGTG GCCAGCGA TAAGCTTGGGGAGAG Shewmr4_0990 1157755 - 1156652 - | rod shape-determining protein RodA Shewmr4_0991 1159608 - 1157752 - | peptidoglycan glycosyltransferase TERM 1353 1158798 - 1158820 + g 76 -7.6 -4.28361 | CGATTGAGCCTTTAT GGCCTTGGAG TAA CTCCACAGCC TTTTGCTGCAATTGC Shewmr4_0992 1160139 - 1159669 - | SPOUT methyltransferase superfamily protein Shewmr4_0993 1160483 - 1160139 - | iojap-like protein Shewmr4_0994 1161224 - 1160586 - | nicotinate-nucleotide adenylyltransferase Shewmr4_0995 1162268 - 1161237 - | DNA polymerase III, delta subunit Shewmr4_0996 1162815 - 1162321 - | rare lipoprotein B TERM 1354 1162682 - 1162724 + g 73 -9.2 -3.76968 | gap 1 GTGAGTTCGCTGTAT TCGTCCGAGCTGCTCAAAC TGAGTT GATTGAGCTGCTCGGG-GA TTTGGTAGCTACGTT TERM 1355 1162793 - 1162751 - G 100 -15.1 -4.19238 | gap 2, opp_overlap 1162759, overlap 1162752 CGTTGAAGCTTAAAA CCGCAACC-T-GCGCTGGTCA TAA TGACCAGCGCCATGATTGCGA AAGCTAAGCGTTTAA TERM 1356 1162792 - 1162752 - G 100 -16.4 -3.11222 | gap 2, opp_overlap 1162759, overlap 1162751 GTTGAAGCTTAAAAC CGCAACC-T-GCGCTGGTCA TAA TGACCAGCGCCATGATTGCG AAAGCTAAGCGTTTA TERM 1357 1162759 - 1162784 + g 76 -12.7 -2.71144 | gap 1, opp_overlap 1162752 1162751 CTTAAAACCGCAACC T-GCGCTGGTCA TAA TGACCAGCGCCA TGATTGCGAAAGCTA leuS 1165454 - 1162875 - | leucyl-tRNA synthetase TERM 1358 1164543 - 1164554 + g 82 -7.2 -4.68593 | CGCATAAAGACCAGT CGCG ACAC CGCG TTTTTCCATGGTGGC Shewmr4_0998 1165576 - 1166076 + | hypothetical protein TERM 1359 1166129 - 1166101 - T 100 -13.3 -3.89614 | opp_overlap 1166108, overlap 1166108 TTCAACGTGCATAAA TAAAAAACGACGC TTA GCGTCGTTTTTTT GTGAGTCATCAACAG TERM 1360 1166108 - 1166122 + T 100 -11.4 -5.64274 | opp_overlap 1166101 1166108 TGCATAAATAAAAAA CGACGC TTA GCGTCG TTTTTTTGTGAGTCA TERM 1361 1166122 - 1166108 - T 100 -11.4 -5.72622 | opp_overlap 1166108, overlap 1166101 TGCATAAATAAAAAA CGACGC TTA GCGTCG TTTTTTTGTGAGTCA Shewmr4_0999 1166632 - 1166138 - | methylation site containing protein Shewmr4_1000 1168198 - 1166648 - | apolipoprotein N-acyltransferase TERM 1362 1168142 - 1168105 - G 90 -12.1 -4.06903 | gap 1, overlap 1168106 AAGGGGCAAAGGAAA GCGCCGTACTGGCGCCTA AAA TAAACGCCAGCACGA-GC CGTAACACGCTCAGT TERM 1363 1168154 - 1168187 + g 70 -9.7 -3.33815 | gap 1, overlap 1168157 GAGCCGTAACACGCT CAGTCGGGACTTTTGT TGG GCAAAAG-CCCGAATG TTAGTTAGCACGGAT Shewmr4_1001 1169116 - 1168241 - | CBS domain-containing protein Shewmr4_1002 1169617 - 1169156 - | putative metalloprotease Shewmr4_1003 1170671 - 1169607 - | PhoH family protein TERM 1364 1170366 - 1170392 + g 73 -8.7 -3.73068 | GGCTTTATCATCACC GCTGTCGTCCT GTTCG AGGGCGATGGC TTCTTGAATTGCCAA TERM 1365 1170901 - 1170868 - R 91 -5.4 -5.58522 | gap 2, opp_overlap 1170868 TACACAAAACAAAAA GGGCGACACTGAGGTT AACT AAAC-CA-TGTCGCCC TGATATAGGTGCTAC Shewmr4_1004 1172359 - 1170935 - | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 1366 1172299 - 1172319 + g 70 -9.1 -3.53012 | AAAGATCCGCCATCT TGGATGAGT CGT ACTCATTCA TTTGACAGCCCCAAG Shewmr4_1005 1172831 - 1172499 - | hypothetical protein TERM 1367 1173041 - 1173004 - H 76 -9.9 -3.33696 | CGCCTTTGTAAGCAA CTGTGAGCAAATGCCCC TCTA GCAACATTTGCTCACCG TTGAGCCGAAATTGA TERM 1368 1174129 - 1174102 - g 77 -11.4 -3.48395 | opp_overlap 1174117, overlap 1174106 ATGCGGCGCACACAA TTAACCCGTTGG CTGG CCAAGGGGTTAA CCTCGGCTTTAAAGA TERM 1369 1174212 - 1174194 - g 77 -8.8 -3.99405 | opp_overlap 1174194, overlap 1174183 TTAACCGAGGATAAA CCTTGGTG GTC CACCGAGG TATTAAACGCCTATC TERM 1370 1174194 - 1174212 + G 74 -11 -3.02829 | opp_overlap 1174183 1174194 TTAACCGAGGATAAA CCTTGGTG GTC CACCGAGG TATTAAACGCCTATC Shewmr4_1006 1173177 - 1174403 + | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase Shewmr4_1007 1174571 - 1175158 + | peptidyl-tRNA hydrolase TERM 1371 1175250 - 1175274 + F 77 -10.7 -2.78384 | opp_overlap 1175249 1175248 GGGTGACTATAAACT TGCTGGTGAGT GTG ACTCGCCAGCC TATCATCGAGAGAAA TERM 1372 1175758 - 1175746 - g 80 -4.7 -5.06816 | ATCCGTCAACAAAAA CGCGC TAA GGGCG GCGACAAAGACGCTA Shewmr4_1008 1175299 - 1176390 + | translation-associated GTPase TERM 1373 1177378 - 1177407 + T 100 -15.9 -3.20193 | opp_overlap 1177384, overlap 1177384 TACCCCAGCCATAGT TAAAAAGCCCGTC TTAC GACGGGCTTTTTG CTTTCTGTCTTTTGT TERM 1374 1177401 - 1177384 - T 100 -12.7 -4.71061 | opp_overlap 1177378 1177384 AGCCATAGTTAAAAA GCCCGTC TTAC GACGGGC TTTTTGCTTTCTGTC TERM 1375 1177384 - 1177401 + T 100 -12.7 -5.07011 | opp_overlap 1177384, overlap 1177378 AGCCATAGTTAAAAA GCCCGTC TTAC GACGGGC TTTTTGCTTTCTGTC TERM 1376 1177615 - 1177589 - T 100 -16 -5.72616 | ATTGAGATAAAAAAA GCCACAGTGCTT AAT AAACACTGTGGC TGACACCGACAAAAA Shewmr4_1009 1178306 - 1177671 - | hypothetical protein TERM 1377 1178072 - 1178055 - G 76 -6.3 -4.5954 | gap 1, opp_overlap 1178054 1178055 1178057 CGATACCATATAAAA CAGC-GGA CCT TCCTGCTG GATTTTATCGGCGGT Shewmr4_1010 1178775 - 1179308 + | hypothetical protein Shewmr4_1011 1179322 - 1179837 + | lysozyme Shewmr4_1012 1179867 - 1180685 + | hypothetical protein TERM 1378 1180708 - 1180731 + F 100 -14 -4.4017 | overlap 1180725 TTTTAACACTCCCCA TGCCCACAAA TTCA TTTGTGGGCA TTTTGTCCCACTTAA TERM 1379 1181040 - 1181017 - g 80 -9.6 -4.08064 | AACGTCGCCCGAAAA TCACTGAAGC GATT GCCTCAGCGA GAGAGTTAGGCGATC Shewmr4_1013 1180932 - 1181408 + | transcription elongation factor GreA TERM 1380 1181448 - 1181462 + F 100 -8.5 -5.35222 | opp_overlap 1181448, overlap 1181460 ATTTACCGATAAGAA GCCGC CTAGC GCGGC TTTTTTATGCCTTTT TERM 1381 1181462 - 1181448 - f 75 -8.5 -3.82378 | opp_overlap 1181448 1181460 ATTTACCGATAAGAA GCCGC CTAGC GCGGC TTTTTTATGCCTTTT Shewmr4_1014 1181707 - 1182234 + | hypothetical protein secD 1182612 - 1184486 + | preprotein translocase subunit SecD TERM 1382 1185024 - 1185041 + G 74 -7.7 -4.1964 | gap 1 TTAATTTAACCGTGC TCGCC-GC CGT GCTGGCGA TTTTAGGCTATTCGC secF 1184489 - 1185373 + | preprotein translocase subunit SecF TERM 1383 1185384 - 1185415 + T 100 -21.8 -3.57144 | opp_overlap 1185384 1185389, overlap 1185389 CATAAGTGCTAAAAA CAAAACGGCCACTC GCTT GAGTGGCCGTTTTG TTTAAGGCTGGAAAA TERM 1384 1185415 - 1185384 - T 100 -21.8 -4.63542 | opp_overlap 1185384 1185389, overlap 1185389 CATAAGTGCTAAAAA CAAAACGGCCACTC GCTT GAGTGGCCGTTTTG TTTAAGGCTGGAAAA TERM 1385 1185389 - 1185410 + T 100 -15.9 -4.87803 | opp_overlap 1185384 1185389, overlap 1185384 GTGCTAAAAACAAAA CGGCCACTC GCTT GAGTGGCCG TTTTGTTTAAGGCTG TERM 1386 1185410 - 1185389 - T 100 -15.9 -5.26119 | opp_overlap 1185389 1185384, overlap 1185384 GTGCTAAAAACAAAA CGGCCACTC GCTT GAGTGGCCG TTTTGTTTAAGGCTG Shewmr4_1017 1185730 - 1185431 - | hypothetical protein TERM 1387 1185535 - 1185551 + g 83 -5.1 -5.14477 | GAGTTTCACGTACTA TGGCATC AAC GATGGCA TTTTTTAGCTCTCTG rrmJ 1185821 - 1186450 + | 23S rRNA methyltransferase J Shewmr4_1019 1186480 - 1188453 + | membrane protease FtsH catalytic subunit TERM 1388 1188467 - 1188495 + F 91 -8.2 -4.70583 | opp_overlap 1188470 1188475, overlap 1188470 1188475 AGCGGTTGTTAATTG AAAGAGAACCCC GTTAA GGGGTTTTCTTG TTTTATCTTGCTAGA TERM 1389 1188470 - 1188492 + F 100 -9.9 -4.45115 | opp_overlap 1188470 1188475, overlap 1188467 1188475 GGTTGTTAATTGAAA GAGAACCCC GTTAA GGGGTTTTC TTGTTTTATCTTGCT TERM 1390 1188492 - 1188470 - f 72 -7.7 -3.75153 | opp_overlap 1188467 1188470 1188475, overlap 1188475 GGTTGTTAATTGAAA GAGAACCCC GTTAA GGGGTTTTC TTGTTTTATCTTGCT TERM 1391 1188475 - 1188487 + F 87 -6.2 -5.12916 | opp_overlap 1188470 1188475, overlap 1188470 1188467 TTAATTGAAAGAGAA CCCC GTTAA GGGG TTTTCTTGTTTTATC Shewmr4_1020 1188612 - 1189445 + | dihydropteroate synthase TERM 1392 1189696 - 1189714 + G 71 -11 -2.71712 | overlap 1189695 CGGTTATATGTTTGA GTCTGCCT TAG AGGCAGGC CTTTCGGCAGCGGGC Shewmr4_1021 1189520 - 1190857 + | phosphoglucosamine mutase Shewmr4_1022 1191051 - 1191833 + | triosephosphate isomerase secG 1191835 - 1192167 + | preprotein translocase subunit SecG TERM 1393 1192164 - 1192143 - f 70 -5.9 -4.32201 | overlap 1192136 TCAAGCAACCGAAAA GTCAGAAAC TAAA ATTCCTGAC TAGTAAAAGGTGTCG TERM 1394 1192485 - 1192500 + F 100 -6.8 -5.60689 | opp_overlap 1192485 TCTTGAAGCTAATAA CCTCGT CATT ACGGGG TTTTTTGTTGTCTGG TERM 1395 1192555 - 1192568 + F 100 -8.1 -6.04324 | TACGGCGTTTTACTA GGGCT ATTA AGCCC TTTTTTGTTTTTTCG Shewmr4_1024 1192594 - 1193049 + | hypothetical protein TERM 1396 1193571 - 1193561 - g 70 -8.2 -3.68569 | opp_overlap 1193559 1193561 TGACTTAGGCAATAA CGCC GAC GGCG TATTGTTCCGTGAAG TERM 1397 1193821 - 1193839 + G 70 -9.6 -3.22521 | opp_overlap 1193814, overlap 1193817 AATCAAACGACCGTC GCATCGAT CCA ATCGGTGC TTGCGTTGGTATGCG nusA 1193079 - 1194578 + | transcription elongation factor NusA TERM 1398 1195408 - 1195383 - g 86 -6.1 -5.06414 | TGCGCGTAACAAAAA TACCGCCAAGT CCAA ACGTGGTGGTA AAGATGCTCGCGATG infB 1194604 - 1197261 + | translation initiation factor IF-2 TERM 1399 1197290 - 1197269 - f 100 -11.5 -4.0616 | opp_overlap 1197271, overlap 1197271 CACTGTAACGATAAA GAGGGCGGC ATTA GCCGCCCTT TCAATTTAATACATT TERM 1400 1197288 - 1197271 - f 100 -14.1 -3.6217 | opp_overlap 1197271, overlap 1197269 CTGTAACGATAAAGA GGGCGGC ATTA GCCGCCC TTTCAATTTAATACA TERM 1401 1197271 - 1197288 + F 100 -14.1 -3.87149 | opp_overlap 1197269 1197271 CTGTAACGATAAAGA GGGCGGC ATTA GCCGCCC TTTCAATTTAATACA rbfA 1197324 - 1197764 + | ribosome-binding factor A Shewmr4_1028 1197764 - 1198717 + | tRNA pseudouridine synthase B rpsO 1198843 - 1199112 + | 30S ribosomal protein S15 TERM 1402 1199130 - 1199158 + T 100 -17.7 -3.08966 | opp_overlap 1199137, overlap 1199137 ACGCGTTTACTGACG TAAAAAAGGAGGC TAA GCCTCCTTTTTTA TTGCCTCAAATTTAG TERM 1403 1199151 - 1199137 - T 100 -11.4 -5.09895 | opp_overlap 1199137 1199130 TACTGACGTAAAAAA GGAGGC TAA GCCTCC TTTTTTATTGCCTCA TERM 1404 1199137 - 1199151 + T 100 -11.4 -5.4833 | opp_overlap 1199137, overlap 1199130 TACTGACGTAAAAAA GGAGGC TAA GCCTCC TTTTTTATTGCCTCA Shewmr4_1030 1201254 - 1199200 - | diguanylate cyclase/phosphodiesterase Shewmr4_1031 1201448 - 1203547 + | polynucleotide phosphorylase/polyadenylase TERM 1405 1203592 - 1203621 + F 100 -12.3 -4.53439 | opp_overlap 1203598, overlap 1203598 TTTGATATGACGTGA CTAAAAGGAGATC AATT GATCTCCTTTTTG TTTGTTTAGGTTTAA TERM 1406 1203598 - 1203615 + F 100 -9.9 -5.5454 | opp_overlap 1203598, overlap 1203592 ATGACGTGACTAAAA GGAGATC AATT GATCTCC TTTTTGTTTGTTTAG TERM 1407 1203615 - 1203598 - f 93 -9.9 -4.2717 | opp_overlap 1203592 1203598 ATGACGTGACTAAAA GGAGATC AATT GATCTCC TTTTTGTTTGTTTAG TERM 1408 1203775 - 1203788 + G 72 -8.1 -3.93782 | GCTGTTGTTGCTGTG CTGGC GGGT GCCAG TTTGATGTTGGCTGG Shewmr4_1032 1203739 - 1204641 + | lipoprotein NlpI TERM 1409 1204650 - 1204669 + F 90 -11.4 -3.64822 | opp_overlap 1204646 AAAATAAGCCATATC GCCCGAGG TACA TCTCGGGC TTTACCTAGCCAAGT TERM 1410 1204694 - 1204711 + F 86 -6.9 -5.03314 | CCAAGTACGCACTGA GGCGCTA TAAT TTGCGCC TTTTTTAGCGATACG prfC 1204741 - 1206321 + | peptide chain release factor 3 TERM 1411 1206363 - 1206347 - f 80 -10.1 -3.61398 | opp_overlap 1206347 TCTCTCGTTCAAGAA GGCGGTA AAT CACCGCC TTTTTTGTCTCTAAA TERM 1412 1206347 - 1206363 + F 100 -9.4 -5.4251 | opp_overlap 1206347 TCTCTCGTTCAAGAA GGCGGT AAATC ACCGCC TTTTTTGTCTCTAAA TERM 1413 1207032 - 1207046 + G 74 -7.1 -4.36914 | opp_overlap 1207021 1207020 AAACTCGCCAAAGGT GGCGT AATAC ACGCC TTTTCTGGCAGCCCC TERM 1414 1207317 - 1207290 - g 91 -3.4 -5.75945 | opp_overlap 1207294, overlap 1207291 1207294 1207311 ACTTTGCAAAAAAAA TCTAGTGTTCTA ATAT CAGAACACTTGG TGTCAAATGCAATGC Shewmr4_1034 1206582 - 1207349 + | TatD-related deoxyribonuclease TERM 1415 1207613 - 1207601 - g 86 -3.4 -5.64873 | TCGAATAACAAAAAA GCAA TTAAC TTGC GTACTGTGGGTGGTG TERM 1416 1207644 - 1207656 + G 76 -6.9 -4.51378 | CATTAGCCATCCAGG CCGCC TTC GGTGG TTTTGTACTGTACGT TERM 1417 1208496 - 1208484 - g 71 -6.3 -4.37886 | opp_overlap 1208483 1208484 TCATCGGTCAGAAAA TCGTT GTT AACGA ATTCGTTGCTTACCT Shewmr4_1035 1207526 - 1208785 + | nucleoside transporter TERM 1418 1208822 - 1208846 + F 80 -11.4 -2.60244 | overlap 1208819 1208819 GATCCCCGCTTACTG GGTCCTGACC ATGCA GGGCAGGACC TAAGTTAATTCAACC TERM 1419 1209112 - 1209093 - f 73 -5.7 -4.52873 | overlap 1209094 GCGCCACAAAAAGAA CGCTACC CTAGAT GGTAGCA AACAAAATAATGGGG TERM 1420 1209634 - 1209621 - g 71 -6.7 -4.18018 | CTTGGTTAGGCAAAA CAGGT ATGA ACCTG TACGGTTACTACGAC Shewmr4_1036 1209134 - 1209973 + | nucleoside-specific channel-forming protein, Tsx TERM 1421 1209989 - 1210014 + F 100 -14.7 -4.62984 | opp_overlap 1209986, overlap 1209991 TTTCTTGTAAGAGCC GTTGGAGCCGC GATG GCGGCTCCATC TTTTATGTGTCATGA TERM 1422 1209991 - 1210012 + F 100 -15.9 -3.92276 | opp_overlap 1209986, overlap 1209989 TCTTGTAAGAGCCGT TGGAGCCGC GATG GCGGCTCCA TCTTTTATGTGTCAT Shewmr4_1037 1210386 - 1211156 + | deoxyribose-phosphate aldolase TERM 1423 1211795 - 1211837 + G 76 -2.7 -5.10461 | gap 1, overlap 1211801 AAGACGTTGGTGTGG CGATTATCGGC-CAAACTGG CGAT CTGGTTCCCGCCGATAAACG TTTTTATTCCATCCG deoA 1211341 - 1212672 + | thymidine phosphorylase Shewmr4_1039 1212682 - 1213896 + | phosphopentomutase deoD 1213988 - 1214698 + | purine nucleoside phosphorylase TERM 1424 1214718 - 1214751 + T 100 -14.9 -3.63715 | gap 1, opp_overlap 1214721 1214726, overlap 1214726 TCGCTAATTTCGTTA TAAGAAAAGGGTTCGC ACT GCGAACCCTTTT-TTA TTGTCTCGTTATCTC TERM 1425 1214749 - 1214721 - T 100 -14.7 -3.30159 | opp_overlap 1214718 1214726, overlap 1214726 CTAATTTCGTTATAA GAAAAGGGTTCGC ACT GCGAACCCTTTTT TATTGTCTCGTTATC TERM 1426 1214744 - 1214726 - T 100 -14.6 -4.77165 | opp_overlap 1214718 1214726, overlap 1214721 TTCGTTATAAGAAAA GGGTTCGC ACT GCGAACCC TTTTTTATTGTCTCG TERM 1427 1214726 - 1214744 + T 100 -14.6 -5.60689 | opp_overlap 1214726 1214721, overlap 1214718 TTCGTTATAAGAAAA GGGTTCGC ACT GCGAACCC TTTTTTATTGTCTCG Shewmr4_1041 1216085 - 1214865 - | membrane protein TERM 1428 1215188 - 1215214 + g 71 -5.9 -4.42851 | ATACGGGTTCTGGCG CAAGTGCAG CTTTTGTTT CTGCGCTTG TTTTGGCTTTCTTCG Shewmr4_1042 1216165 - 1217157 + | phosphoserine phosphatase Shewmr4_1043 1217240 - 1218241 + | alpha/beta hydrolase fold Shewmr4_1044 1220630 - 1218258 - | type IV pilus assembly PilZ TERM 1429 1218941 - 1218918 - G 73 -5.2 -4.66609 | gap 1, overlap 1218920 CAGTTTATTTAAAAA CTC-CACCCCA ACG TGGGGCGTGTG ACCCATGACCGCAGC Shewmr4_1045 1220732 - 1222096 + | DNA repair protein RadA TERM 1430 1222134 - 1222106 - T 100 -14.7 -4.38129 | opp_overlap 1222112, overlap 1222112 ATATAATCATCAAAA CAAAAACAGCGCC AAG GGCGCTGTTTTTT ATGATGTCGTTGGCT TERM 1431 1222112 - 1222128 + T 100 -13.7 -5.34555 | opp_overlap 1222112 1222106 TCATCAAAACAAAAA CAGCGCC AAG GGCGCTG TTTTTTATGATGTCG TERM 1432 1222128 - 1222112 - T 100 -13.7 -5.50723 | opp_overlap 1222112, overlap 1222106 TCATCAAAACAAAAA CAGCGCC AAG GGCGCTG TTTTTTATGATGTCG TERM 1433 1222150 - 1222176 + T 82 -6.6 -4.80882 | opp_overlap 1222156, overlap 1222147 1222155 1222156 ATGATGTCGTTGGCT TATAAAGCTGTG TCA CACAGCATTTTA TTTTTAATCTGCGCT TERM 1434 1222155 - 1222171 + T 89 -6.5 -5.32396 | opp_overlap 1222156, overlap 1222147 1222150 1222156 GTCGTTGGCTTATAA AGCTGTG TCA CACAGCA TTTTATTTTTAATCT TERM 1435 1222170 - 1222156 - T 84 -10 -3.85698 | opp_overlap 1222147 1222156 1222155 1222150 TCGTTGGCTTATAAA GCTGTG TCA CACAGC ATTTTATTTTTAATC TERM 1436 1222156 - 1222170 + T 84 -10 -3.76997 | opp_overlap 1222156, overlap 1222147 1222155 1222150 TCGTTGGCTTATAAA GCTGTG TCA CACAGC ATTTTATTTTTAATC Shewmr4_1046 1222572 - 1222180 - | type IV pilus assembly PilZ Shewmr4_1047 1222752 - 1223462 + | DNA-binding transcriptional regulator TorR Shewmr4_1048 1224548 - 1223481 - | periplasmic sensory protein associated with the TorRS two-component regulatory system TERM 1437 1223609 - 1223599 - G 76 -8.2 -4.13014 | opp_overlap 1223592 1223603 CCTATATCGCCAAAA GGCG CAG CGCC TTCGAGCTGTTTTAC TERM 1438 1223736 - 1223759 + g 84 -4.6 -5.27938 | gap 1 TAAGTAACTGCTCAC CAGCTTGATGT CTT GCGTCA-GCTG TTTTTGTTTGAGGGT TERM 1439 1225107 - 1225121 + G 71 -7.8 -4.08216 | AATCCGAATTGGCGG TCGTCG ACT CGGCGA TTTTGGCAAAACTCA TERM 1440 1225964 - 1225938 - g 78 -5.8 -4.75174 | opp_overlap 1225938, overlap 1225930 CATTTAAGCGAAAAA CCGCCCATAATC TGA AATTGCAGGCGG ATTTACGCCAGGTGG Shewmr4_1049 1224605 - 1227658 + | multi-sensor hybrid histidine kinase TERM 1441 1227781 - 1227802 + T 100 -11.5 -4.06905 | opp_overlap 1227782, overlap 1227782 ATCGAGGAATAAAAA AGCGGCTCC TATG GGAGCCGCA TTTCGTTAATTTATT TERM 1442 1227801 - 1227782 - T 100 -15 -5.5112 | opp_overlap 1227781 1227782 TCGAGGAATAAAAAA GCGGCTCC TATG GGAGCCGC ATTTCGTTAATTTAT TERM 1443 1227782 - 1227801 + T 100 -15 -3.02516 | opp_overlap 1227782, overlap 1227781 TCGAGGAATAAAAAA GCGGCTCC TATG GGAGCCGC ATTTCGTTAATTTAT torD 1228575 - 1227946 - | chaperone protein TorD TERM 1444 1228633 - 1228596 - R 71 -9.1 -3.36273 | opp_overlap 1228600 1228600 1228608, overlap 1228598 1228599 GTTCCTCAAGATTAA CAGTGGAATGCGCCTAG TTGA CTAGGCGCATCGCCTTG TGGGCTCGGTTAGAT TERM 1445 1228630 - 1228598 - R 74 -9.2 -3.25073 | gap 1, opp_overlap 1228600 1228600 1228608, overlap 1228596 1228599 TCCTCAAGATTAACA GTGGAATGCGCCTAG TTGA CTAGGCGCATCGC-C TTGTGGGCTCGGTTA TERM 1446 1228600 - 1228629 + r 76 -10.7 -2.6006 | opp_overlap 1228598 1228599 1228596, overlap 1228600 1228608 CTCAAGATTAACAGT GGAATGCGCCTAG TTGA CTAGGCGCATCGC CTTGTGGGCTCGGTT TERM 1447 1228600 - 1228630 + r 78 -10.5 -3.33969 | gap 1, opp_overlap 1228598 1228599 1228596, overlap 1228600 1228608 CTCAAGATTAACAGT GG-AATGCGCCTAG TTGA CTAGGCGCATCGCC TTGTGGGCTCGGTTA Shewmr4_1051 1231132 - 1228643 - | trimethylamine-N-oxide reductase TorA Shewmr4_1052 1232326 - 1231148 - | trimethylamine-N-oxide reductase c-type cytochrome TorC Shewmr4_1053 1232523 - 1232353 - | periplasmic nitrate reductase NapE TERM 1448 1233922 - 1233908 - g 72 -8.6 -3.86194 | AATCTGCTGGATAAA GACGAT AAT ATCGTC GGCGGTGGCAAGGCG Shewmr4_1054 1233041 - 1234393 + | xanthine/uracil/vitamin C permease TERM 1449 1234448 - 1234414 - T 100 -12.2 -3.86015 | opp_overlap 1234421, overlap 1234415 1234421 TACTCTCTCTATAAA GTTGAAAGCGAGTGCC GTT AGCACTCGCTTTCATT GACCTCATTGTGTTC TERM 1450 1234447 - 1234415 - T 100 -15.7 -2.91395 | opp_overlap 1234421, overlap 1234414 1234421 ACTCTCTCTATAAAG TTGAAAGCGAGTGCC GTT AGCACTCGCTTTCAT TGACCTCATTGTGTT TERM 1451 1234441 - 1234421 - T 100 -13.3 -3.74347 | opp_overlap 1234421, overlap 1234415 1234414 TCTATAAAGTTGAAA GCGAGTGCC GTT AGCACTCGC TTTCATTGACCTCAT TERM 1452 1234421 - 1234441 + T 100 -12.6 -3.92178 | opp_overlap 1234421 1234415 1234414 TCTATAAAGTTGAAA GCGAGTGC CGTTA GCACTCGC TTTCATTGACCTCAT Shewmr4_1055 1234862 - 1234431 - | CBS domain-containing protein TERM 1453 1234609 - 1234631 + g 70 -2.7 -4.8667 | gap 1 ACAGTAACGGGATTA CGGGT-CATC ACCT GATGGACGCG TTTTTGTAGGGTCTC Shewmr4_1056 1236853 - 1234964 - | phospholipid/glycerol acyltransferase TERM 1454 1236582 - 1236549 - G 71 -5.9 -4.35926 | opp_overlap 1236567 ACGGTAAAGCTAAAA TCGAAGCTGGCGAGC ACTT GCTCGACAAAGTCGA CCCCTTGTAGATAGG Shewmr4_1057 1237938 - 1236856 - | metallophosphoesterase TERM 1455 1238364 - 1238394 + r 72 -9.9 -2.7535 | gap 1, opp_overlap 1238373, overlap 1238373 GTTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTGTATTAAACAA TERM 1456 1238384 - 1238373 - R 73 -7.2 -4.09511 | opp_overlap 1238373 1238364 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 1457 1238373 - 1238384 + r 81 -7.2 -4.60487 | opp_overlap 1238373, overlap 1238364 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 1458 1239510 - 1239483 - R 88 -12.6 -2.62263 | AGGTTTGCGAGACGA CCGTCCGCCCCA TGGA CGGGGCGGTCGA GCATCCACGGATGGA TERM 1459 1239693 - 1239729 + r 70 -8 -3.63782 | opp_overlap 1239699, overlap 1239699 1239719 1239722 TGTTTGAATCAGTAT AAAAAAGGGGAGTCAG TTAAT CTGACTCCCCTTGATA TTTAAGGTGATGTTG TERM 1460 1239699 - 1239723 + r 100 -15.8 -3.46285 | opp_overlap 1239699, overlap 1239693 1239719 1239722 AATCAGTATAAAAAA GGGGAGTCAG TTAAT CTGACTCCCC TTGATATTTAAGGTG TERM 1461 1239723 - 1239699 - R 100 -15.8 -5.33785 | opp_overlap 1239699 1239693 1239719 1239722 AATCAGTATAAAAAA GGGGAGTCAG TTAAT CTGACTCCCC TTGATATTTAAGGTG Shewmr4_1058 1241106 - 1239748 - | nucleoside recognition domain-containing protein TERM 1462 1241480 - 1241491 + H 78 -2.2 -5.58074 | GATTCTTCGAATATT CAGC TTTT GTTG TTTTTTTGGTCGTTA TERM 1463 1242090 - 1242100 + G 79 -8.2 -4.32067 | CCGTGAGTGGTTTTT GGGG ATA CCCC TTCTTTTGTGCGCTG TERM 1464 1242521 - 1242488 - g 80 -10.3 -3.71649 | opp_overlap 1242488 1242491, overlap 1242482 CTGCTAAACCCTAAA TGGCTCACTCAGGAG CAAG CTCCCGAGTGAGTGA TTTTAGTGATTAACC TERM 1465 1242488 - 1242521 + G 89 -10.3 -4.3534 | opp_overlap 1242488 1242482, overlap 1242491 CTGCTAAACCCTAAA TGGCTCACTCAGGAG CAAG CTCCCGAGTGAGTGA TTTTAGTGATTAACC TERM 1466 1242491 - 1242518 + G 86 -14.2 -3.16033 | opp_overlap 1242488 1242482, overlap 1242488 CTAAACCCTAAATGG CTCACTCAGGAG CAAG CTCCCGAGTGAG TGATTTTAGTGATTA Shewmr4_1059 1241810 - 1242517 + | hypothetical protein Shewmr4_1060 1243416 - 1242547 - | peptidase U32 TERM 1467 1242972 - 1242986 + g 72 -10 -3.39028 | overlap 1242970 GCTTTTGTGCGACCA CTTGGC TAA GCCAAG TCTTTGACAGTTCTA Shewmr4_1061 1244448 - 1243447 - | peptidase U32 Shewmr4_1062 1244587 - 1245123 + | sterol-binding domain-containing protein TERM 1468 1245187 - 1245149 - T 100 -20.6 -2.60244 | opp_overlap 1245153 1245158, overlap 1245153 1245158 GCTGTAATCAAGTGA TAAACAAAAGCCCCGC TGACATT GCGGGGCTTTTGTTTA GCTTGGACGGGCGAT TERM 1469 1245183 - 1245153 - T 100 -17 -3.99898 | opp_overlap 1245153 1245158, overlap 1245149 1245158 TAATCAAGTGATAAA CAAAAGCCCCGC TGACATT GCGGGGCTTTTG TTTAGCTTGGACGGG TERM 1470 1245153 - 1245183 + T 100 -17 -3.75153 | opp_overlap 1245153 1245149 1245158, overlap 1245158 TAATCAAGTGATAAA CAAAAGCCCCGC TGACATT GCGGGGCTTTTG TTTAGCTTGGACGGG TERM 1471 1245158 - 1245178 + T 100 -11.1 -4.94058 | opp_overlap 1245153 1245149 1245158, overlap 1245153 AAGTGATAAACAAAA GCCCCGC TGACATT GCGGGGC TTTTGTTTAGCTTGG TERM 1472 1245178 - 1245158 - T 100 -11.1 -5.01553 | opp_overlap 1245158 1245153, overlap 1245153 1245149 AAGTGATAAACAAAA GCCCCGC TGACATT GCGGGGC TTTTGTTTAGCTTGG Shewmr4_1063 1245460 - 1245209 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewmr4_1064 1246828 - 1245464 - | peptidase U32 Shewmr4_1065 1247180 - 1248019 + | putative signal transduction protein Shewmr4_1066 1248105 - 1249631 + | diguanylate cyclase/phosphodiesterase Shewmr4_1067 1250033 - 1249620 - | thioesterase superfamily protein TERM 1473 1250109 - 1250097 - R 74 -4.8 -4.86731 | TCGGGCTAAACAAAA CCCA AGATG TGGG TAAACTCGGTGGTTA TERM 1474 1250184 - 1250159 - R 100 -12.7 -5.07011 | opp_overlap 1250159 GATACAAAGTAAAAA GCCATATTCGC CGAA ACGAATATGGC TTTTTTGTAGGGTAA TERM 1475 1250159 - 1250184 + r 100 -12 -5.26316 | opp_overlap 1250159 GATACAAAGTAAAAA GCCATATTCG CCGAAA CGAATATGGC TTTTTTGTAGGGTAA Shewmr4_1068 1251477 - 1250221 - | adenylosuccinate synthetase TERM 1476 1250824 - 1250838 + g 70 -2.8 -4.86033 | opp_overlap 1250824 TTGCGCTTCAAATAA CAAGTT AGC ATCTTG TTTTTGTAAGGCTTT Shewmr4_1069 1251594 - 1252502 + | LysR family transcriptional regulator Shewmr4_1070 1253336 - 1252518 - | extracellular solute-binding protein TERM 1477 1252874 - 1252886 + g 74 -7.7 -4.15222 | CGACTATGCTGCCTT TGGGA ATT TCCCA TTTATTGGCGGCGAT TERM 1478 1252943 - 1252930 - G 72 -3.7 -4.82901 | opp_overlap 1252938 TTGCGTTGATAAAAA GAGGC TTTC GCCAC AAATAGCGGCGTGTT Shewmr4_1071 1253540 - 1253968 + | OsmC family protein TERM 1479 1254031 - 1254000 - T 100 -11.7 -4.09243 | opp_overlap 1254007, overlap 1254001 1254003 1254007 GATAGCGGCTTAAAA GCATAAACCCCAG AGTTTG CTGGGGTTTATGT CAATGGTTATCAGCT TERM 1480 1254030 - 1254001 - T 100 -15.2 -3.05224 | opp_overlap 1254007, overlap 1254000 1254003 1254007 ATAGCGGCTTAAAAG CATAAACCCCAG AGTTTG CTGGGGTTTATG TCAATGGTTATCAGC TERM 1481 1254028 - 1254003 - T 86 -12 -3.08211 | opp_overlap 1254007, overlap 1254001 1254000 1254007 AGCGGCTTAAAAGCA TAAACCCCAG AGTTTG CTGGGGTTTA TGTCAATGGTTATCA TERM 1482 1254024 - 1254007 - T 79 -8.4 -4.208 | opp_overlap 1254007, overlap 1254003 1254001 1254000 GCTTAAAAGCATAAA CCCCAG AGTTTG CTGGGG TTTATGTCAATGGTT TERM 1483 1254007 - 1254024 + T 77 -8.4 -4.07526 | opp_overlap 1254007 1254003 1254001 1254000 GCTTAAAAGCATAAA CCCCAG AGTTTG CTGGGG TTTATGTCAATGGTT Shewmr4_1072 1254677 - 1254057 - | TetR family transcriptional regulator TERM 1484 1255078 - 1255090 + G 71 -6.9 -4.13654 | overlap 1255079 GATATTGATGTTGAC TGCCG TGG CGGCG TTTGTCCTTTCGGCC Shewmr4_1073 1255040 - 1256278 + | RND family efflux transporter MFP subunit Shewmr4_1074 1256292 - 1259441 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1485 1259473 - 1259490 + F 100 -11.3 -5.82388 | opp_overlap 1259446 1259473 TGTTAACCTTAAAAA GACCTGC AAAT GCAGGTC TTTTTTTTCGGCTTT TERM 1486 1259490 - 1259473 - f 100 -11.3 -4.66833 | opp_overlap 1259473, overlap 1259446 TGTTAACCTTAAAAA GACCTGC AAAT GCAGGTC TTTTTTTTCGGCTTT TERM 1487 1259521 - 1259544 + F 88 -12.6 -2.57192 | opp_overlap 1259521, overlap 1259517 AGCGGCTAAATATAA CTGATCTAAC TATA GTTAGATCAG TGCGTTAAATTAGGT TERM 1488 1259544 - 1259521 - f 100 -12.6 -3.81755 | opp_overlap 1259521 1259517 AGCGGCTAAATATAA CTGATCTAAC TATA GTTAGATCAG TGCGTTAAATTAGGT Shewmr4_1075 1259567 - 1260844 + | metal dependent phosphohydrolase Shewmr4_1076 1261114 - 1261761 + | hypothetical protein TERM 1489 1261949 - 1261965 + G 70 -4.3 -4.67038 | CTCAGTCAAAGCTTA TCTGTGC TCA GCGCCGA TTTTGGTTTTAAGCG TERM 1490 1262580 - 1262603 + G 86 -11 -3.9941 | TCTTTGCGTTGACGC TGGCATTGGC GATT GCCATTGCCA TTTGGTTGTCGGGCA Shewmr4_1077 1261751 - 1264048 + | diguanylate cyclase/phosphodiesterase TERM 1491 1264065 - 1264054 - f 89 -7.2 -5.02606 | CAGCAAATAAGAAAA CGCC GACT GGCG TCATCATCGCCCTCT TERM 1492 1264583 - 1264562 - g 78 -2.1 -5.34555 | overlap 1264564 GCACAGTATAAAAAA GTGGATGAC TTTA GCCTTCCTC AGGCGGTTGGCGCGC Shewmr4_1078 1264115 - 1264993 + | hypothetical protein Shewmr4_1079 1264990 - 1265481 + | globin Shewmr4_1080 1266092 - 1265538 - | hypothetical protein Shewmr4_1081 1266927 - 1266160 - | AraC family transcriptional regulator TERM 1493 1267710 - 1267698 - g 76 -4.8 -4.93365 | TGGGATAATTAAAAA CACC TTGCT GGTG GCCTCATTTAACTTG Shewmr4_1082 1267072 - 1268259 + | Bcr/CflA subfamily drug resistance transporter TERM 1494 1268268 - 1268292 + T 100 -13.6 -4.208 | opp_overlap 1268268 GACTTAAATAAAAAA GCCAAGGGGC AATGA GTCCCTTGGC TTTATGATTTTAACA TERM 1495 1268292 - 1268268 - T 100 -11.4 -5.65927 | opp_overlap 1268268 GACTTAAATAAAAAA GCCAAGGGGC AATGA GTCCCTTGGC TTTATGATTTTAACA Shewmr4_1083 1271497 - 1268342 - | acriflavin resistance protein TERM 1496 1269041 - 1269061 + g 84 -11.1 -3.84648 | opp_overlap 1269037 1269036 1269035 ATCCAAAAACTTCAA GGCTTCACC CAA GGTGTAGCC TTTACTGATGTTGGC Shewmr4_1084 1272609 - 1271497 - | RND family efflux transporter MFP subunit Shewmr4_1085 1273603 - 1272809 - | hypothetical protein TERM 1497 1273792 - 1273766 - R 100 -9.5 -4.74706 | gap 1, opp_overlap 1273762 1273766, overlap 1273789 CTCAAGATGTAAAAA GGGCCTATG-GG TAAA CCTCATAAGCCC TTCATTCTGTAGTGC TERM 1498 1273766 - 1273792 + r 73 -8.7 -3.51076 | opp_overlap 1273766 1273789, overlap 1273762 CTCAAGATGTAAAAA GGGCCTATGGG TAAAC CTCATAAGCCC TTCATTCTGTAGTGC Shewmr4_1086 1275017 - 1273851 - | metallophosphoesterase Shewmr4_1087 1275549 - 1279220 + | type IV pilin biogenesis protein, putative TERM 1499 1279469 - 1279447 - g 79 -7 -4.64676 | TTACCCGGAACAAAA TTGCCCCG TTTACCG CGGGACAA ACCCATTGCGCTCTA Shewmr4_1088 1279243 - 1279578 + | hypothetical protein TERM 1500 1279583 - 1279612 + T 75 -8.9 -3.65415 | gap 1, overlap 1279579 ATCAAGGTTGACCGG TTTTCTAAG-CTTT TAA AAAGACTTAGAAAA TTGCTTTGTGCTTAG TERM 1501 1279672 - 1279636 - T 75 -7.4 -4.30576 | gap 1, opp_overlap 1279635 1279639 1279641, overlap 1279638 1279639 1279641 TGCTTAGGACTAAAA TATTACGCCTTAGGTAG TAAA CTTCCTAAGGCGTA-TG CTTTTAAACACCAAC TERM 1502 1279671 - 1279638 - T 100 -12.5 -3.7574 | opp_overlap 1279635 1279639 1279641, overlap 1279636 1279639 1279641 CTTAGGACTAAAATA TTACGCCTTAGGTAG TAAA CTTCCTAAGGCGTAT GCTTTTAAACACCAA TERM 1503 1279639 - 1279670 + T 100 -16 -3.08032 | opp_overlap 1279638 1279636 1279639 1279641, overlap 1279635 1279641 TTAGGACTAAAATAT TACGCCTTAGGTAG TAAA CTTCCTAAGGCGTA TGCTTTTAAACACCA TERM 1504 1279670 - 1279639 - T 100 -16 -2.84962 | opp_overlap 1279639 1279635 1279641, overlap 1279638 1279636 1279641 TTAGGACTAAAATAT TACGCCTTAGGTAG TAAA CTTCCTAAGGCGTA TGCTTTTAAACACCA TERM 1505 1279641 - 1279668 + T 100 -14.2 -3.09823 | opp_overlap 1279639 1279638 1279636 1279641, overlap 1279639 1279635 AGGACTAAAATATTA CGCCTTAGGTAG TAAA CTTCCTAAGGCG TATGCTTTTAAACAC TERM 1506 1279668 - 1279641 - T 100 -14.2 -2.96723 | opp_overlap 1279641 1279639 1279635, overlap 1279639 1279638 1279636 AGGACTAAAATATTA CGCCTTAGGTAG TAAA CTTCCTAAGGCG TATGCTTTTAAACAC Shewmr4_1089 1280360 - 1279707 - | putative protein-disulfide isomerase TERM 1507 1280454 - 1280433 - R 80 -11.5 -2.68786 | opp_overlap 1280431 1280429 1280428, overlap 1280432 TACATCAGAATGAAT GGGGCAGGG AATA CCGTGCCCC GATGCGTTTACATGG Shewmr4_1090 1281361 - 1280462 - | beta-lactamase domain-containing protein TERM 1508 1282279 - 1282267 - g 70 -9.1 -3.53224 | TATGGTGGTGTTAAA CGCCA CCT TGGCG GGGGAGGGAATTGCC Shewmr4_1091 1281551 - 1282474 + | LysR family transcriptional regulator TERM 1509 1283307 - 1283339 + G 80 -2.7 -5.26119 | gap 1 ATCCAATTTGTGTCC TCCGTGG-TGCTGT GGTTGA ACGGTTTCCACGGA TTTTATTTTTGGCAA Shewmr4_1092 1282734 - 1283741 + | hypothetical protein TERM 1510 1283794 - 1283767 - T 100 -14.2 -4.36914 | opp_overlap 1283772, overlap 1283772 CTTTTGTGCATAAAA GAAAAGCCCCGC AATT GCGGGGCTTTTT ATGTACCTATAAACG TERM 1511 1283772 - 1283789 + T 100 -14.1 -4.99638 | opp_overlap 1283767 1283772 GTGCATAAAAGAAAA GCCCCGC AATT GCGGGGC TTTTTATGTACCTAT TERM 1512 1283789 - 1283772 - T 100 -14.1 -5.18371 | opp_overlap 1283772, overlap 1283767 GTGCATAAAAGAAAA GCCCCGC AATT GCGGGGC TTTTTATGTACCTAT Shewmr4_1093 1285485 - 1283818 - | putative ABC transporter ATP-binding protein TERM 1513 1284710 - 1284732 + g 86 -8.4 -4.72272 | overlap 1284701 GCGCTTTCTGCGGCA GATTCCTGCT TCA AGCGGGCATC TTTTTGCTCAAGCCA TERM 1514 1285698 - 1285687 - g 73 -3 -5.055 | GCAATGCTGAAAAAA GATA TGAA TATC GCAGATTATGATCCG glyA 1285675 - 1286928 + | serine hydroxymethyltransferase TERM 1515 1287026 - 1287044 + F 100 -11.7 -5.1356 | opp_overlap 1287023 1287022 TAGGATAAAATCCCA TGGCCGC ATTAA GCGGCCA TTTTTATTGCTAAAA Shewmr4_1095 1287139 - 1287588 + | transcriptional regulator NrdR Shewmr4_1096 1287676 - 1288821 + | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase Shewmr4_1097 1288829 - 1289485 + | riboflavin synthase subunit alpha Shewmr4_1098 1289553 - 1290656 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II TERM 1516 1290810 - 1290798 - g 76 -6.3 -4.69656 | AATTAGGTAAGAAAA TGAAC GTA GTTCA AGGTAATATCGAAGC Shewmr4_1099 1290797 - 1291273 + | 6,7-dimethyl-8-ribityllumazine synthase nusB 1291288 - 1291692 + | transcription antitermination protein NusB TERM 1517 1291726 - 1291697 - f 89 -12.3 -2.89081 | opp_overlap 1291703, overlap 1291703 CACGTAAGTAATAAG GACAAACGGTATC TTAG GATACCGTTTTTC ATTGCTAACAAAGGT TERM 1518 1291720 - 1291703 - f 88 -9.9 -4.14859 | opp_overlap 1291703, overlap 1291697 AGTAATAAGGACAAA CGGTATC TTAG GATACCG TTTTTCATTGCTAAC TERM 1519 1291703 - 1291720 + F 100 -9.9 -4.90266 | opp_overlap 1291703 1291697 AGTAATAAGGACAAA CGGTATC TTAG GATACCG TTTTTCATTGCTAAC Shewmr4_1101 1291771 - 1292727 + | thiamine-monophosphate kinase TERM 1520 1292748 - 1292765 + G 79 -12.7 -3.07895 | opp_overlap 1292747 1292750, overlap 1292750 TTGTTATCCCAAGAT CAGGCGC TGTC GCGCCTG TCTCTTAAAAATCCA Shewmr4_1102 1292727 - 1293221 + | phosphatidylglycerophosphatase TERM 1521 1293271 - 1293246 - T 83 -12 -2.60075 | opp_overlap 1293246, overlap 1293245 1293248 TTTGTGGTAATCAAG CAGCCTTTAG TGAATT CTAAAGGCTG TTTTTATTTGCGAGA TERM 1522 1293246 - 1293271 + T 100 -12 -5.27335 | opp_overlap 1293245 1293246 1293248 TTTGTGGTAATCAAG CAGCCTTTAG TGAATT CTAAAGGCTG TTTTTATTTGCGAGA Shewmr4_1103 1294194 - 1293319 - | UspA domain-containing protein TERM 1523 1294550 - 1294522 - R 100 -16.3 -2.53876 | opp_overlap 1294522 1294526 1294529, overlap 1294526 1294529 TTCCATCCTAAGTCA TAAATAAGGCTCT GCT AGAGCCTTATTTA TGTGTAAGCCTGAAT TERM 1524 1294522 - 1294550 + r 100 -16.3 -2.88663 | opp_overlap 1294522 1294526 1294529, overlap 1294526 1294529 TTCCATCCTAAGTCA TAAATAAGGCTCT GCT AGAGCCTTATTTA TGTGTAAGCCTGAAT TERM 1525 1294546 - 1294526 - R 100 -12.7 -3.97636 | opp_overlap 1294522 1294526 1294529, overlap 1294522 1294529 ATCCTAAGTCATAAA TAAGGCTCT GCT AGAGCCTTA TTTATGTGTAAGCCT TERM 1526 1294526 - 1294546 + r 100 -12.7 -4.128 | opp_overlap 1294526 1294522 1294529, overlap 1294522 1294529 ATCCTAAGTCATAAA TAAGGCTCT GCT AGAGCCTTA TTTATGTGTAAGCCT TERM 1527 1294529 - 1294543 + r 88 -10 -4.18674 | opp_overlap 1294526 1294522 1294529, overlap 1294526 1294522 CTAAGTCATAAATAA GGCTCT GCT AGAGCC TTATTTATGTGTAAG TERM 1528 1294543 - 1294529 - R 88 -10 -4.11304 | opp_overlap 1294529 1294526 1294522, overlap 1294526 1294522 CTAAGTCATAAATAA GGCTCT GCT AGAGCC TTATTTATGTGTAAG Shewmr4_1104 1296243 - 1294585 - | recombination and repair protein Shewmr4_1105 1297335 - 1296373 - | auxin efflux carrier Shewmr4_1106 1297610 - 1298509 + | LysR family transcriptional regulator Shewmr4_1107 1298748 - 1298515 - | hypothetical protein Shewmr4_1108 1299444 - 1298845 - | hypothetical protein Shewmr4_1109 1302226 - 1299419 - | hybrid sensory histidine kinase BarA TERM 1529 1301329 - 1301350 + gH 100 -8.7 -5.09895 | gap 1, opp_overlap 1301329, overlap 1301330 AGAACTCCGACTTAA TGCG-GCTGG CCT CCAGCGCGCG TTTTTTGGCTAAGTC TERM 1530 1301330 - 1301349 + gH 80 -10 -3.65214 | gap 1, opp_overlap 1301329, overlap 1301329 GAACTCCGACTTAAT GCG-GCTGG CCT CCAGCGCGC GTTTTTTGGCTAAGT TERM 1531 1301678 - 1301663 - GH 71 -6 -4.39277 | opp_overlap 1301665 1301669, overlap 1301665 CAAGACGATAATAAA GGCGGC CACG GCGGCC CTGTGCTGTTCGAGC rumA 1302286 - 1303677 + | 23S rRNA 5-methyluridine methyltransferase Shewmr4_1111 1303867 - 1306074 + | (p)ppGpp synthetase I, SpoT/RelA TERM 1532 1306213 - 1306240 + T 100 -14.8 -2.62616 | TCCGTCCTTGGATGC TCGACCGCCCCA TCCG TGGGGCGGACGG TCGTCTCGCAAATCA TERM 1533 1306420 - 1306399 - T 100 -13.7 -3.96449 | gap 1 TAACATTTTAAATAA CCGG-CCCGC GTA GCGGGTCCGG CGGAAGCAAAGTTGA Shewmr4_1112 1306895 - 1306437 - | hypothetical protein TERM 1534 1306578 - 1306595 + g 76 -8.3 -4.14739 | opp_overlap 1306577 TCCAGATGAAAACGC GCCCTGG TGAA CCTGGGC TTTTCGGATAACTGG TERM 1535 1307349 - 1307371 + H 74 -7.6 -3.91798 | AGTTCTCCTTGGTCG GGTGTGGGGT GAA GCCCCACGAC TTTGATTAAGCATTC TERM 1536 1308319 - 1308276 - g 74 -7.5 -4.27474 | overlap 1308284 AAATCCACGAAGAAA TTGATGAAGTGCTGGCGGA GGTGAA TCAGCCAACACTCGACCAA GCCAAAGTACAGGCC mazG 1307669 - 1308547 + | nucleoside triphosphate pyrophosphohydrolase Shewmr4_1114 1308664 - 1310304 + | CTP synthetase TERM 1537 1310343 - 1310308 - f 76 -11 -2.63182 | opp_overlap 1310312, overlap 1310307 1310306 CTGAAGAAATAAATT TTAAGGCCGGACCCGC GACA GTGGGCCCGGCCTTTT GTTACACTCAGGCCG TERM 1538 1310312 - 1310339 + F 100 -16.2 -4.65916 | opp_overlap 1310308 1310307 1310306 AGAAATAAATTTTAA GGCCGGACCCGC GACA GTGGGCCCGGCC TTTTGTTACACTCAG TERM 1539 1311061 - 1311051 - g 71 -5.4 -4.56597 | opp_overlap 1311051 TGTTGGCGCGAAAAA CTTC CGC GAAG CTTTACGTATGGGCG Shewmr4_1115 1310518 - 1311813 + | enolase TERM 1540 1311852 - 1311835 - f 100 -12.7 -4.65895 | opp_overlap 1311835 CGTCTGATGTAAAAA GGCCACC ACTT GGTGGCC TTTTTTGTTGTACTA TERM 1541 1311835 - 1311852 + F 100 -12.7 -5.58179 | opp_overlap 1311835 CGTCTGATGTAAAAA GGCCACC ACTT GGTGGCC TTTTTTGTTGTACTA Shewmr4_1116 1311914 - 1312213 + | cell division protein FtsB Shewmr4_1117 1312224 - 1312973 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Shewmr4_1118 1313025 - 1313504 + | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Shewmr4_1119 1313534 - 1314661 + | pseudouridylate synthase TERM 1542 1314760 - 1314737 - g 70 -8.8 -3.53091 | opp_overlap 1314749 1314752, overlap 1314738 AGGCGCTTGCCGAAA TCGCAACCGT GATG ACGGTCGCGC CCGATCGTAATTGTT TERM 1543 1314759 - 1314738 - g 74 -12.3 -2.71712 | opp_overlap 1314749 1314752, overlap 1314737 GGCGCTTGCCGAAAT CGCAACCGT GATG ACGGTCGCG CCCGATCGTAATTGT Shewmr4_1120 1314658 - 1315407 + | 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase Shewmr4_1121 1315404 - 1316039 + | protein-L-isoaspartate O-methyltransferase Shewmr4_1122 1316137 - 1317033 + | peptidase M23B Shewmr4_1123 1317114 - 1318094 + | RNA polymerase, sigma 28 subunit TERM 1544 1318159 - 1318195 + T 75 -10.4 -2.84528 | gap 1, opp_overlap 1318158 1318159 1318168, overlap 1318158 1318168 ACCAGTTTAAAAAGT CATAAAAA-ACGCCCAA TACT TAGGGCGTTTTTTTATG CTTTCGCGTTTATGT TERM 1545 1318195 - 1318159 - T 74 -10.4 -2.62098 | gap 1, opp_overlap 1318159 1318158 1318168, overlap 1318158 1318168 ACCAGTTTAAAAAGT CATAAAAA-ACGCCCAA TACT TAGGGCGTTTTTTTATG CTTTCGCGTTTATGT TERM 1546 1318168 - 1318185 + T 100 -6.9 -5.75599 | opp_overlap 1318159 1318158 1318168, overlap 1318159 1318158 AAAAGTCATAAAAAA CGCCCAA TACT TAGGGCG TTTTTTTATGCTTTC TERM 1547 1318185 - 1318168 - T 89 -6.9 -5.35222 | opp_overlap 1318168 1318159 1318158, overlap 1318159 1318158 AAAAGTCATAAAAAA CGCCCAA TACT TAGGGCG TTTTTTTATGCTTTC Shewmr4_1124 1320820 - 1318235 - | DNA mismatch repair protein TERM 1548 1318937 - 1318924 - G 70 -9.5 -3.31792 | CCATTAGGGTGATAA GCGCC ACTT GGCGC ATGTAGGTCGATTTA TERM 1549 1320776 - 1320787 + g 70 -3 -4.88736 | CAAATATTGACGCAT CATA GGGG TATG TTTTTCTAAATCATC recA 1321203 - 1322276 + | recombinase A TERM 1550 1322294 - 1322323 + F 100 -14.3 -3.01712 | gap 1, opp_overlap 1322295 CAGTCAGCCCGTCAA ATCGCGGTCGCGCT GTT AGCGCG-CCGCGAC TATTCCCGCCAAGAA TERM 1551 1322322 - 1322295 - f 100 -17.8 -3.54543 | gap 1, opp_overlap 1322294 AGTCAGCCCGTCAAA TCGCGGTCGCGCT GTT AGCGCG-CCGCGA CTATTCCCGCCAAGA TERM 1552 1322393 - 1322415 + G 76 -7 -4.43844 | opp_overlap 1322382, overlap 1322382 GATATCGATCCCGTG CTCGATGATT GTG AAGCATCGGG TTTTATCAATGATAA Shewmr4_1126 1322390 - 1322761 + | regulatory protein RecX TERM 1553 1325569 - 1325557 - g 77 -10.5 -3.53224 | opp_overlap 1325556 CAGGTGGGTGGTAAA GGCGG TGG CCGCC CTGATATGGCTCAAG Shewmr4_1127 1323037 - 1325661 + | alanyl-tRNA synthetase TERM 1554 1325729 - 1325758 + G 70 -11.5 -2.70932 | AGAAGTTTGGTGGCA CTTCGGTGGGTTC GATT GAACGCATCGAAG TGGTTGCCGAGCAAA TERM 1555 1325862 - 1325902 + G 83 -14.8 -2.62184 | gap 1, opp_overlap 1325848 1325845 1325843 1325867, overlap 1325867 ATTTGCGCTTGCGGC GCAAATCGA-TCCCCGCGC GAGT GCGCGGGAACTCGATATGC TGGTCTCGACGGGAG TERM 1556 1325897 - 1325867 - g 89 -14.1 -3.53012 | gap 1, opp_overlap 1325862 1325867, overlap 1325845 1325843 CGCTTGCGGCGCAAA TCGA-TCCCCGCGC GAGT GCGCGGGAACTCGA TATGCTGGTCTCGAC TERM 1557 1325867 - 1325897 + G 74 -11.9 -2.84634 | gap 1, opp_overlap 1325845 1325843 1325867, overlap 1325862 CGCTTGCGGCGCAAA TCGA-TCCCCGCGC GAGT GCGCGGGAACTCGA TATGCTGGTCTCGAC Shewmr4_1128 1325671 - 1326927 + | aspartate kinase Shewmr4_1129 1327046 - 1327243 + | carbon storage regulator, CsrA / carbon storage regulator, CsrA TERM 1558 1327272 - 1327303 + T 100 -8.2 -5.00616 | opp_overlap 1327279, overlap 1327279 CGAGTATTAGCGACA TAGAAGAGTCAGTT TTTT AACTGGCTTTTTTA TTTTTTGAACCGAAA TERM 1559 1327279 - 1327296 + T 100 -6.3 -6.04324 | opp_overlap 1327279, overlap 1327272 TAGCGACATAGAAGA GTCAGTT TTTT AACTGGC TTTTTTATTTTTTGA TERM 1560 1328486 - 1328465 - T 100 -14.5 -3.53722 | opp_overlap 1328465 GTTAGATTTAGATAA GCCCTGCAA GTAA TTGCAGGGC TTTTTTAATGGAATT TERM 1561 1328465 - 1328486 + T 100 -14.5 -5.16237 | opp_overlap 1328465 GTTAGATTTAGATAA GCCCTGCAA GTAA TTGCAGGGC TTTTTTAATGGAATT TERM 1562 1328814 - 1328832 + T 100 -13.2 -4.62783 | opp_overlap 1328814 CTGGGGAAATAAAAA GGGCTGTA AAA TACAGCCC TTTTTAGCGTAGATG TERM 1563 1328832 - 1328814 - T 100 -13.2 -5.27335 | opp_overlap 1328814 CTGGGGAAATAAAAA GGGCTGTA AAA TACAGCCC TTTTTAGCGTAGATG valS 1331730 - 1328854 - | valyl-tRNA synthetase TERM 1564 1331130 - 1331152 + g 80 -2.7 -5.26247 | gap 1, opp_overlap 1331130, overlap 1331136 CGGCTAATGGATAAC GTAGGTGCCA CATG TGGC-CTTGC TTTTCTTTGTTTTCC Shewmr4_1131 1332210 - 1331746 - | DNA polymerase III chi subunit, HolC TERM 1565 1331814 - 1331839 + g 77 -9.7 -3.72742 | CTAAGCCACGATATT GGCGGTAGCGT TCAC GTGCTATCGCC TTATGTTGGTCGTCA TERM 1566 1332439 - 1332422 - R 100 -12.7 -4.31065 | opp_overlap 1332422, overlap 1332417 AGATATAAAAGCAAA GCGCACC CGAA GGTGCGC TGATTGAAAGACTTG TERM 1567 1332422 - 1332439 + r 88 -12.7 -2.71681 | opp_overlap 1332417 1332422 AGATATAAAAGCAAA GCGCACC CGAA GGTGCGC TGATTGAAAGACTTG Shewmr4_1132 1333709 - 1333353 - | sigma 54 modulation protein / SSU ribosomal protein S30P Shewmr4_1133 1334007 - 1334696 + | cytochrome B561 TERM 1568 1334742 - 1334710 - T 86 -12.2 -3.04501 | opp_overlap 1334718, overlap 1334718 AGCAAGTGCTGAACA TTAAAAAAGCCTGC ATGTA GCAGGCTTTTTTAT TAGACATTACAACGC TERM 1569 1334718 - 1334734 + T 100 -9.4 -5.45652 | opp_overlap 1334710 1334718 CTGAACATTAAAAAA GCCTGC ATGTA GCAGGC TTTTTTATTAGACAT TERM 1570 1334734 - 1334718 - T 100 -9.4 -5.27779 | opp_overlap 1334718, overlap 1334710 CTGAACATTAAAAAA GCCTGC ATGTA GCAGGC TTTTTTATTAGACAT Shewmr4_1134 1335211 - 1334762 - | cytochrome c, class II TERM 1571 1334858 - 1334876 + g 73 -5.2 -4.64334 | overlap 1334859 ACCTTTTTGAGCCAC AGTCGCTA AAA TAGCGGCA TTTTCTTGGAAGGTT Shewmr4_1135 1335401 - 1335676 + | Trp operon repressor Shewmr4_1136 1336084 - 1335707 - | hypothetical protein TERM 1572 1336229 - 1336206 - R 100 -11.8 -5.60993 | opp_overlap 1336202 1336206 TTGTTGATAAAAAAA GCACCTCCTT ATGT AAGGAAGTGC TTCATTATCTTGCTC TERM 1573 1336206 - 1336229 + r 76 -9.6 -3.55453 | opp_overlap 1336206, overlap 1336202 TTGTTGATAAAAAAA GCACCTCCTT ATGT AAGGAAGTGC TTCATTATCTTGCTC Shewmr4_1137 1336939 - 1336277 - | peptidylprolyl isomerase, FKBP-type TERM 1574 1337505 - 1337529 + H 100 -12.9 -5.72622 | opp_overlap 1337502, overlap 1337517 GAATTTTAACGACGA GCCCGCTTC CCACAAA GAAGCGGGC TTTTTTGTTTCTAGC TERM 1575 1338948 - 1338932 - g 71 -7.9 -4.01603 | opp_overlap 1338934 1338944 1338944 1338945, overlap 1338935 CAGCGAAAGACCAAA CATGCGG TTG CCGCCTG TCATCAGGGCTTTTT thrA 1337582 - 1340050 + | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 1576 1340336 - 1340322 - g 84 -2.1 -5.63504 | gap 1, opp_overlap 1340323, overlap 1340323 1340324 AACCCTAGAAAAAAA CTTGCC CGTC GGCA-G TGGCTTAGGTTCGAG Shewmr4_1139 1340047 - 1340985 + | homoserine kinase TERM 1577 1341226 - 1341216 - g 74 -2.4 -5.15634 | opp_overlap 1341216 GAGCGCAGTAAAAAA GTGC TCG GCGC TTGGCTCGCCTCAGA TERM 1578 1341322 - 1341336 + G 71 -7.1 -4.18018 | CGGTCGATGAGCAGC GCTCG TGCCT CGAGC TTTTCCATGGGCCAA TERM 1579 1341458 - 1341476 + G 74 -8 -4.09864 | CTCGGGTGACACTGG GGCGGCGG TGG CCGATGCC TTTTACGGCCTAGAT TERM 1580 1341575 - 1341548 - g 71 -6.4 -4.3586 | gap 1, overlap 1341572 1341574 TGAGCTACAGGAAAA GATGTTCACCACC TTA GGTAA-GAACATC CACACTGTGGCAGTA Shewmr4_1140 1341051 - 1342334 + | threonine synthase TERM 1581 1342383 - 1342366 - f 89 -11.3 -3.481 | opp_overlap 1342366, overlap 1342360 TAAGCGAAATATCAA GGGAGTC AATT GACTCCC TTTTTTACAAGTGTA TERM 1582 1342366 - 1342383 + F 100 -11.3 -5.04385 | opp_overlap 1342366 1342360 TAAGCGAAATATCAA GGGAGTC AATT GACTCCC TTTTTTACAAGTGTA Shewmr4_1141 1342600 - 1342893 + | hypothetical protein Shewmr4_1142 1343063 - 1343941 + | extracellular solute-binding protein Shewmr4_1143 1344148 - 1347429 + | peptidase S41 TERM 1583 1347434 - 1347421 - T 73 -5.3 -4.71223 | GCAGAAGACATAAAA GCTAA GTAA TTAGC TTAAAAAATAGAAAT TERM 1584 1347500 - 1347530 + T 100 -14.8 -5.60993 | TTGGTTCAATGTTAG GGTGTTGTCTTGTG GTT CCCGAGACAACACC TTTTTTTATGCCCAC Shewmr4_1144 1347958 - 1347536 - | hypothetical protein TERM 1585 1348080 - 1348053 - R 100 -15.8 -3.60805 | ATAGGTCATCGGAAA GGGCAAGTTTAT CGCG ATAAACTTGCCC CAAATCGTTAAAACT Shewmr4_1145 1348525 - 1348088 - | OsmC family protein Shewmr4_1146 1348975 - 1348625 - | hypothetical protein Shewmr4_1147 1350654 - 1348972 - | PepSY-associated TM helix domain-containing protein Shewmr4_1148 1351024 - 1350656 - | hypothetical protein Shewmr4_1149 1351448 - 1353016 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Shewmr4_1150 1353246 - 1353602 + | sigma 54 modulation protein / SSU ribosomal protein S30P TERM 1586 1353620 - 1353656 + T 100 -16.2 -2.8805 | gap 1, opp_overlap 1353624 1353631, overlap 1353624 1353631 TATTACCTTAACGAT GC-AATAAAAAAGGGCC AACT GGCCCTTTTTTATTGGC TGTGTGACACGTCCT TERM 1587 1353651 - 1353624 - T 100 -15.8 -3.13343 | opp_overlap 1353620 1353624 1353631, overlap 1353631 ACCTTAACGATGCAA TAAAAAAGGGCC AACT GGCCCTTTTTTA TTGGCTGTGTGACAC TERM 1588 1353624 - 1353651 + T 100 -15.8 -3.15999 | opp_overlap 1353624 1353631, overlap 1353620 1353631 ACCTTAACGATGCAA TAAAAAAGGGCC AACT GGCCCTTTTTTA TTGGCTGTGTGACAC TERM 1589 1353644 - 1353631 - T 100 -9.5 -5.4833 | opp_overlap 1353624 1353620 1353631, overlap 1353624 CGATGCAATAAAAAA GGGCC AACT GGCCC TTTTTTATTGGCTGT TERM 1590 1353631 - 1353644 + T 100 -9.5 -5.49234 | opp_overlap 1353631 1353624, overlap 1353624 1353620 CGATGCAATAAAAAA GGGCC AACT GGCCC TTTTTTATTGGCTGT Shewmr4_1151 1354421 - 1353744 - | two component LuxR family transcriptional regulator Shewmr4_1152 1355626 - 1354466 - | putative signal transduction histidine kinase TERM 1591 1355898 - 1355923 + H 100 -16.2 -5.19916 | opp_overlap 1355890 1355901 AAAAAATCGATTACT CAACCCCGCC CAAAGT GGCGGGGTTG TTTTTTCCGTCTTTT TERM 1592 1355920 - 1355901 - H 86 -12.1 -3.10908 | opp_overlap 1355898, overlap 1355890 AAATCGATTACTCAA CCCCGCC CAAAGT GGCGGGG TTGTTTTTTCCGTCT Shewmr4_1153 1355962 - 1356507 + | isochorismatase hydrolase TERM 1593 1356547 - 1356518 - T 100 -13.7 -3.6106 | opp_overlap 1356524, overlap 1356524 GTTAATATCCGCAAA CAAAAACGCAGCC ATTA GGCTGCGTTTTTT GATATCAGAATCAAC TERM 1594 1356524 - 1356541 + T 100 -12.7 -5.21709 | opp_overlap 1356524 1356518 ATCCGCAAACAAAAA CGCAGCC ATTA GGCTGCG TTTTTTGATATCAGA TERM 1595 1356541 - 1356524 - T 100 -12.7 -5.27938 | opp_overlap 1356524, overlap 1356518 ATCCGCAAACAAAAA CGCAGCC ATTA GGCTGCG TTTTTTGATATCAGA Shewmr4_1154 1357285 - 1356563 - | hypothetical protein TERM 1596 1356954 - 1356973 + g 71 -5.8 -4.32482 | gap 1 TTCACGAAGGCTTGA CGTAC-TTC GGT GAAGGTACG TTTTACGTTGTCGGT TERM 1597 1359178 - 1359214 + G 83 -10.1 -4.20354 | TGATGCATGATTTGT CCGTCCCGATTTATGTC AAT GGCAAACATTGGGGCGG TTTTAGGATTGGATT Shewmr4_1155 1357674 - 1359245 + | methyl-accepting chemotaxis sensory transducer Shewmr4_1156 1359561 - 1359785 + | hypothetical protein TERM 1598 1359826 - 1359849 + T 76 -6.8 -4.4874 | opp_overlap 1359826 CACTTGAAACTTAAA GGACGATAAG TGGA TTTATTGTCC TTTTGCGTTTTTGGG TERM 1599 1359863 - 1359885 + T 70 -2.7 -4.96848 | gap 1, overlap 1359864 CCTTTTGCGTTTTTG GGGC-TGCTT AACT AAGCACGCCG TTTTTATCTGCAGAC Shewmr4_1157 1360470 - 1359889 - | TetR family transcriptional regulator TERM 1600 1360557 - 1360516 - H 83 -11.9 -2.61274 | opp_overlap 1360515 1360526, overlap 1360515 1360526 CTGATTCTAACTAAT TTTGAACAAACATTCAAAA ATGT TCTTGAATGATCGTTCAAA TAAGAATATCTTGAA TERM 1601 1360547 - 1360526 - H 71 -6.7 -4.183 | opp_overlap 1360515 1360526, overlap 1360516 1360515 CTAATTTTGAACAAA CATTCAAAA ATGT TCTTGAATG ATCGTTCAAATAAGA TERM 1602 1360585 - 1360566 - H 70 -8 -3.63464 | overlap 1360564 1360577 GTTCAAATAAGAATA TCTTGAAT GCAC ATTCAAGA ATGGGGCAACAGCAA Shewmr4_1158 1360600 - 1361667 + | NADH:flavin oxidoreductase/NADH oxidase TERM 1603 1361695 - 1361713 + T 100 -13.2 -5.1166 | opp_overlap 1361695 ATTACCGATAAGAAA GGGTTAGC TTA GCTAACCC TTTTTGCTTTTGGTC TERM 1604 1361713 - 1361695 - T 100 -13.2 -4.33819 | opp_overlap 1361695 ATTACCGATAAGAAA GGGTTAGC TTA GCTAACCC TTTTTGCTTTTGGTC Shewmr4_1159 1364152 - 1361735 - | ATP-dependent protease, putative TERM 1605 1362024 - 1362039 + g 83 -3.3 -5.37593 | opp_overlap 1362024, overlap 1362026 TTAATCTTACACACA TCGAA AAAGCC TTCGA TTTTTTCATTTACGC TERM 1606 1363393 - 1363382 - G 73 -5.8 -4.58283 | opp_overlap 1363381 1363382 CAAGGGTTTGAAAAA GTGC ACCA GCAC ATCTTTAGCGACTTG TERM 1607 1365132 - 1365116 - g 77 -8.7 -4.04209 | overlap 1365109 1365118 CTAAAGCAGCATAAA TACGCCT TGG AGGCGCA GCGCGGGCAAGTCTA TERM 1608 1365130 - 1365118 - g 70 -9.1 -3.60538 | overlap 1365109 1365116 AAAGCAGCATAAATA CGCCT TGG AGGCG CAGCGCGGGCAAGTC Shewmr4_1160 1364552 - 1367188 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shewmr4_1161 1367338 - 1368567 + | DEAD/DEAH box helicase domain-containing protein TERM 1609 1368636 - 1368657 + T 100 -15.9 -5.61881 | opp_overlap 1368632 TGATTTAGATACTTA TCCGCCCCA GAGA TGGGGCGGA TTTTTGTTTTTCAAC Shewmr4_1162 1369340 - 1368831 - | hypothetical protein Shewmr4_1163 1369542 - 1370495 + | hypothetical protein TERM 1610 1371192 - 1371182 - g 74 -2.4 -5.09426 | TCCAAGGGCAAAAAA CGGC AGA GCTG CACGCGGGTCATTCG Shewmr4_1164 1370569 - 1371654 + | MerR family transcriptional regulator TERM 1611 1372376 - 1372358 - g 71 -7.4 -4.06384 | opp_overlap 1372360 GCCCAAGACTATAAA CAGGATAG GGA CTTTCCTG CTCTCGAGGGTACCA TERM 1612 1372666 - 1372656 - g 76 -8.2 -4.13767 | opp_overlap 1372655 1372656 GGTGCGAGGGCAAAA CGGG TTA CCCG ATTGTAGATGCGGCA Shewmr4_1165 1371647 - 1373128 + | deoxyribodipyrimidine photo-lyase type I TERM 1613 1373547 - 1373571 + G 79 -13 -3.05935 | opp_overlap 1373553, overlap 1373553 ATTATTTCGACTTAG GGCAAATGCT GTATG AGCATTTGCC TTGCATGGGCGGTCT Shewmr4_1166 1373174 - 1373620 + | transcriptional regulator-related protein TERM 1614 1373659 - 1373645 - g 71 -5 -4.46155 | overlap 1373649 1373651 TACAGATCCACAAAA TCAACA CTG TGCTGA TCACAGGGGCAAGCT Shewmr4_1167 1373620 - 1374420 + | short-chain dehydrogenase/reductase SDR Shewmr4_1168 1374417 - 1375667 + | amine oxidase Shewmr4_1169 1375664 - 1376455 + | hypothetical protein Shewmr4_1170 1376457 - 1377713 + | cyclopropane-fatty-acyl-phospholipid synthase Shewmr4_1171 1377726 - 1378271 + | hypothetical protein Shewmr4_1172 1378326 - 1378898 + | hypothetical protein Shewmr4_1173 1378886 - 1379434 + | hypothetical protein Shewmr4_1174 1379499 - 1379720 + | hypothetical protein TERM 1615 1379838 - 1379857 + T 74 -4.2 -4.93296 | gap 1, opp_overlap 1379832 1379831, overlap 1379832 1379831 1379829 AGGATTAACCCGCTT GGCGG-CTA TTG TCGACCGCC TTTTTATCGTAATAC Shewmr4_1175 1380171 - 1379827 - | hypothetical protein TERM 1616 1380343 - 1380353 + G 74 -6.8 -4.30719 | TACCTATCTAATGCT GACC GTT GGTC TTTATTGTGCAAAAA Shewmr4_1176 1380325 - 1380510 + | hypothetical protein TERM 1617 1380665 - 1380635 - f 100 -13.4 -3.8679 | opp_overlap 1380635 1380642, overlap 1380642 TACAAAATATGGAAA CAAAAAAGCCACTC ATT GAGTGGCTTCGTTG TTTTTATGGTGCCGG TERM 1618 1380635 - 1380665 + F 100 -11.2 -4.91109 | opp_overlap 1380635 1380642, overlap 1380642 TACAAAATATGGAAA CAAAAAAGCCACTC ATT GAGTGGCTTCGTTG TTTTTATGGTGCCGG TERM 1619 1380642 - 1380658 + F 100 -12.3 -3.77278 | opp_overlap 1380635 1380642, overlap 1380635 TATGGAAACAAAAAA GCCACTC ATT GAGTGGC TTCGTTGTTTTTATG TERM 1620 1380658 - 1380642 - f 100 -12.3 -5.65927 | opp_overlap 1380642 1380635, overlap 1380635 TATGGAAACAAAAAA GCCACTC ATT GAGTGGC TTCGTTGTTTTTATG TERM 1621 1381288 - 1381240 - f 100 -12.7 -3.68619 | opp_overlap 1381256, overlap 1381242 1381245 1381256 GTGAATTCATCCAAA TACCAGAAACAAAAAAGCCACTC AGT GAGTGGCTTTTTTGTTTTTTATG GTGCCGGCACCAAGA TERM 1622 1381286 - 1381242 - f 100 -15.3 -3.42283 | opp_overlap 1381256, overlap 1381240 1381245 1381256 GAATTCATCCAAATA CCAGAAACAAAAAAGCCACTC AGT GAGTGGCTTTTTTGTTTTTTA TGGTGCCGGCACCAA TERM 1623 1381283 - 1381245 - f 100 -19.2 -2.86124 | opp_overlap 1381256, overlap 1381242 1381240 1381256 TTCATCCAAATACCA GAAACAAAAAAGCCACTC AGT GAGTGGCTTTTTTGTTTT TTATGGTGCCGGCAC TERM 1624 1381256 - 1381272 + F 100 -12.3 -6.07374 | opp_overlap 1381245 1381242 1381240 1381256 ACCAGAAACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTTAT TERM 1625 1381272 - 1381256 - f 100 -12.3 -5.73978 | opp_overlap 1381256, overlap 1381245 1381242 1381240 ACCAGAAACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTTAT Shewmr4_1177 1381833 - 1382384 + | cytochrome B561 TERM 1626 1382410 - 1382398 - g 82 -4.1 -5.3671 | AATATAATGAAAAAA CAACT ATT AGCTG CTTTGATTGGTGGGT Shewmr4_1178 1382389 - 1382964 + | hypothetical protein TERM 1627 1382999 - 1383024 + T 78 -10.5 -3.2511 | opp_overlap 1383005, overlap 1383005 CATTTATCAACGAAT AAAAAAGCGCC CTTG GGCGCTTTTTG CTTTTATGGATAGGC TERM 1628 1383005 - 1383018 + T 100 -9.5 -5.1417 | opp_overlap 1383005, overlap 1382999 TCAACGAATAAAAAA GCGCC CTTG GGCGC TTTTTGCTTTTATGG TERM 1629 1383018 - 1383005 - T 100 -9.5 -5.5604 | opp_overlap 1383005 1382999 TCAACGAATAAAAAA GCGCC CTTG GGCGC TTTTTGCTTTTATGG Shewmr4_1179 1383326 - 1383048 - | hypothetical protein Shewmr4_1180 1384454 - 1383336 - | A/G-specific DNA-adenine glycosylase TERM 1630 1383444 - 1383456 + g 70 -4.8 -4.68384 | TTGATTGATGTTATA CCAG AGAGA CTGG TTTTGTTCCATGACT TERM 1631 1385092 - 1385077 - g 72 -3.9 -4.82901 | overlap 1385078 TCCGTGGCATAAAAA GCGCC ACCACA AGCGC CGTATCGTGCAGGCG trmB 1384634 - 1385350 + | tRNA (guanine-N(7))-methyltransferase TERM 1632 1385329 - 1385354 + F 86 -7.7 -4.73912 | gap 1 TGGCGTGTGGGATCT GATGTTTGAGCG TAT CGCTTAA-CATC TTTTATGGTTTTTAT Shewmr4_1182 1385396 - 1385722 + | hypothetical protein TERM 1633 1386274 - 1386284 + G 74 -6.8 -4.38092 | opp_overlap 1386274, overlap 1386270 GGCGATGTCGATACA GTGC TGC GCAC TTATTTTCATTATTG Shewmr4_1183 1385722 - 1386636 + | glutaminase TERM 1634 1387079 - 1387066 - g 78 -2.3 -5.24799 | overlap 1387067 CGACAAACAGAAAAA GCTGG TTAG CCAGT ATGCCGATGAGGTGT Shewmr4_1184 1386815 - 1387636 + | hypothetical protein TERM 1635 1387753 - 1387728 - f 86 -6.9 -5.07011 | gap 1, opp_overlap 1387728 GATATAAATGAAAAA GCCCCAGTAC GTTAAGT GT-CTGGGGC TTTTTCTTGATTCAT TERM 1636 1387728 - 1387753 + F 100 -8.3 -5.20534 | gap 1, opp_overlap 1387728 GATATAAATGAAAAA GCCCCAGTACGT TAA GTGT-CTGGGGC TTTTTCTTGATTCAT Shewmr4_1185 1388056 - 1388997 + | LysR family transcriptional regulator TERM 1637 1389344 - 1389370 + T 100 -11.7 -5.67967 | ATCCTAGTTTTTGGT TTACCTCAGCT CATTA GGCTGAGGTAA TTTTTTTCTGATGGT TERM 1638 1389553 - 1389514 - T 100 -18.2 -3.86822 | opp_overlap 1389519 1389526, overlap 1389515 1389526 CAAGCCGGTGATAAA TCCAATAAAAAAGCCACT TGAT AGTGGCTTTTTTATTGGC TGCGATTTAACGATG TERM 1639 1389552 - 1389515 - T 100 -21.7 -2.91772 | opp_overlap 1389519 1389526, overlap 1389514 1389526 AAGCCGGTGATAAAT CCAATAAAAAAGCCACT TGAT AGTGGCTTTTTTATTGG CTGCGATTTAACGAT TERM 1640 1389519 - 1389548 + T 100 -15.3 -3.08966 | opp_overlap 1389515 1389514 1389526, overlap 1389526 CGGTGATAAATCCAA TAAAAAAGCCACT TGAT AGTGGCTTTTTTA TTGGCTGCGATTTAA TERM 1641 1389526 - 1389541 + T 100 -9 -5.4833 | opp_overlap 1389515 1389514 1389526, overlap 1389519 AAATCCAATAAAAAA GCCACT TGAT AGTGGC TTTTTTATTGGCTGC TERM 1642 1389541 - 1389526 - T 100 -9 -5.52096 | opp_overlap 1389526 1389519, overlap 1389515 1389514 AAATCCAATAAAAAA GCCACT TGAT AGTGGC TTTTTTATTGGCTGC TERM 1643 1389585 - 1389614 + T 87 -8.5 -4.54821 | opp_overlap 1389593, overlap 1389586 TATTCGCAACGGCGT TCAAGGGAGGCTA GCGT TAGCCTCCCAAGG TTTTATGCTTAGGCT TERM 1644 1389586 - 1389613 + T 76 -9.8 -3.3217 | opp_overlap 1389593, overlap 1389585 ATTCGCAACGGCGTT CAAGGGAGGCTA GCGT TAGCCTCCCAAG GTTTTATGCTTAGGC Shewmr4_1186 1391470 - 1389623 - | hypothetical protein TERM 1645 1390642 - 1390656 + g 71 -6.4 -4.34402 | CATCGCGGGTATCGG CCTTGG CTT CTAAGG TTTTGATATAGGCGA TERM 1646 1391573 - 1391563 - R 70 -5.4 -4.42386 | overlap 1391566 GTGTTAGCTATAAAA GATG CTT CATC GAGAAACCTAGGCTA Shewmr4_1187 1393045 - 1391888 - | putative oxygen-independent coproporphyrinogen III oxidase Shewmr4_1188 1393662 - 1393045 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 1647 1393780 - 1393808 + r 100 -21.9 -3.36671 | opp_overlap 1393780 TAAAGGACAGAAAAA GGCAGGACGATAC TTG GTATCGTCCTGCC TTATGAGGTTGAGAT TERM 1648 1393808 - 1393780 - R 100 -21.9 -5.06585 | opp_overlap 1393780 TAAAGGACAGAAAAA GGCAGGACGATAC TTG GTATCGTCCTGCC TTATGAGGTTGAGAT Shewmr4_1189 1394257 - 1393823 - | hypothetical protein Shewmr4_1190 1394616 - 1394326 - | hypothetical protein TERM 1649 1394603 - 1394576 - G 91 -11.4 -4.2074 | overlap 1394580 GGTTGAATATACAAA TTAAGCAGCAAG TCGC CTTGCTGCATAA TGACTGCGCTCATTA TERM 1650 1394599 - 1394580 - G 85 -12.2 -3.69088 | overlap 1394576 GAATATACAAATTAA GCAGCAAG TCGC CTTGCTGC ATAATGACTGCGCTC Shewmr4_1191 1395164 - 1394616 - | protein of unknown function YGGT TERM 1651 1395086 - 1395073 - G 76 -4.5 -4.92783 | AAGGGATTATAAAAA TCGGC ACGG GCCAA GGGGAGCCAGATCCG Shewmr4_1192 1396058 - 1395240 - | pyrroline-5-carboxylate reductase TERM 1652 1396084 - 1396104 + r 71 -9.8 -2.59267 | overlap 1396083 TAATGTCTGGCCTAG GCTGAATG GATAA CATTCAGC ATTAATATCATTGAA Shewmr4_1193 1396999 - 1396283 - | hypothetical protein Shewmr4_1194 1397035 - 1398072 + | pilus retraction ATPase PilT Shewmr4_1195 1398082 - 1399194 + | twitching motility protein TERM 1653 1399217 - 1399234 + F 100 -11.3 -5.66684 | opp_overlap 1399217 TGCGGTGATGTTAAA GCAGCTC CCTT GAGCTGC TTTTTTTATCGCTTA TERM 1654 1399234 - 1399217 - f 90 -11.3 -3.59979 | opp_overlap 1399217 TGCGGTGATGTTAAA GCAGCTC CCTT GAGCTGC TTTTTTTATCGCTTA Shewmr4_1196 1399293 - 1399904 + | glutathione peroxidase TERM 1655 1400273 - 1400253 - g 70 -2.5 -4.92783 | overlap 1400233 AAGTTATCAGAAAAA TTAACGGCC GAT GGGCATCAA GTATCAGTACATTTA Shewmr4_1197 1399974 - 1400957 + | ferrochelatase TERM 1656 1400978 - 1401005 + T 100 -10 -5.0809 | opp_overlap 1400983, overlap 1400983 ATAAGTGCAGAAATA AAAAAGGATAGC TTAG GCTATCCTTTTG TTTTTATGATTTATT TERM 1657 1401000 - 1400983 - T 100 -9.9 -5.72622 | opp_overlap 1400978 1400983 TGCAGAAATAAAAAA GGATAGC TTAG GCTATCC TTTTGTTTTTATGAT TERM 1658 1400983 - 1401000 + T 100 -9.9 -5.3658 | opp_overlap 1400983, overlap 1400978 TGCAGAAATAAAAAA GGATAGC TTAG GCTATCC TTTTGTTTTTATGAT Shewmr4_1198 1401444 - 1401019 - | Holliday junction resolvase-like protein Shewmr4_1199 1402038 - 1401475 - | hypothetical protein Shewmr4_1200 1402436 - 1402107 - | translation initiation factor Sui1 TERM 1659 1402534 - 1402508 - R 100 -10.8 -5.47218 | overlap 1402530 GGGGAGGTAAAAAAA GGCCACTGACAG AGA CTGAAAGTGGCC GAAGGTCAATGCTAG Shewmr4_1201 1402900 - 1402586 - | hypothetical protein TERM 1660 1403574 - 1403556 - g 82 -6.8 -4.83615 | TATCCGTGATAAAAA TACTCCTT CGG AAAGAGTA CAGCTGATCAACGAA Shewmr4_1202 1403080 - 1403640 + | hypothetical protein TERM 1661 1403646 - 1403692 + F 100 -13.3 -3.67417 | gap 1, opp_overlap 1403661, overlap 1403661 AAACAAATAATTTAC TTTTAGTC-TAAAAAAGCGGCC CTTT GGCCGCTTTTTTGTGGCCAAAA TTTAGACTTGAGTGT TERM 1662 1403661 - 1403676 + F 100 -11.8 -5.24129 | opp_overlap 1403661, overlap 1403646 TTTTAGTCTAAAAAA GCGGCC CTTT GGCCGC TTTTTTGTGGCCAAA TERM 1663 1403676 - 1403661 - f 100 -11.8 -5.0538 | opp_overlap 1403661 1403646 TTTTAGTCTAAAAAA GCGGCC CTTT GGCCGC TTTTTTGTGGCCAAA Shewmr4_1203 1403994 - 1404635 + | hypothetical protein TERM 1664 1404634 - 1404668 + T 100 -16 -2.87186 | opp_overlap 1404642, overlap 1404642 ACCAGCATACTCACT AATAAAAATGGGGCAT TAA ATGCCCCATTTTTATG CTTATTGCTGTGCTT TERM 1665 1404660 - 1404642 - T 100 -13.2 -5.14163 | opp_overlap 1404634 1404642 ACTCACTAATAAAAA TGGGGCAT TAA ATGCCCCA TTTTTATGCTTATTG TERM 1666 1404642 - 1404660 + T 100 -13.2 -5.03945 | opp_overlap 1404642, overlap 1404634 ACTCACTAATAAAAA TGGGGCAT TAA ATGCCCCA TTTTTATGCTTATTG Shewmr4_1204 1405263 - 1404670 - | thiol peroxidase (atypical 2-Cys peroxiredoxin) TERM 1667 1405243 - 1405227 - G 73 -2.9 -5.01811 | overlap 1405229 1405232 CCATTAAACTAAAAA TACAGCC AGC GGCTAGA AATGAAACATACTTT TERM 1668 1405356 - 1405339 - R 100 -12.7 -5.32882 | opp_overlap 1405330 1405339 TATCACCATAAAAAA GGCCGGT ATTT ACCGGCC TTATAATGTTATTGC TERM 1669 1405339 - 1405356 + r 100 -12.7 -3.56958 | opp_overlap 1405339, overlap 1405330 TATCACCATAAAAAA GGCCGGT ATTT ACCGGCC TTATAATGTTATTGC Shewmr4_1205 1406202 - 1405375 - | MscS mechanosensitive ion channel TERM 1670 1405441 - 1405453 + g 78 -4.1 -5.10877 | AATTTCAATGTTGGC TGCAT CGA GTGCA TTTTTGATTTGTTCT Shewmr4_1206 1406809 - 1406234 - | OmpA/MotB domain-containing protein TERM 1671 1406509 - 1406490 - G 73 -2.8 -5.00616 | TTCGCGTCTAAAAAA GCTTTTAC TAAG GCTAAAGC TTTCCATTGCGATAA Shewmr4_1207 1407109 - 1408122 + | L-threonine aldolase TERM 1672 1408133 - 1408152 + F 100 -10 -5.29782 | opp_overlap 1408123 TATAATCGGCGTGAC GCCCAAGT GAAA GCTTGGGC TTTTTTATACCTCTG Shewmr4_1208 1408286 - 1409752 + | putative signal transduction protein TERM 1673 1409740 - 1409756 + T 79 -10.9 -3.1883 | TGTGTGTTTTACCGT GTCGCTA AAA TAGCGAC TTACTGAGCGTTTTT Shewmr4_1209 1410296 - 1409757 - | hypothetical protein Shewmr4_1210 1411172 - 1410348 - | hypothetical protein Shewmr4_1211 1413006 - 1411270 - | diguanylate cyclase TERM 1674 1412319 - 1412307 - G 76 -5.5 -4.84359 | CCATTTCGATAAAAA GACGC ATG GCATC CCGTTGAAGCTGGTT Shewmr4_1212 1414496 - 1413003 - | extracellular solute-binding protein TERM 1675 1414605 - 1414579 - R 100 -9.5 -5.78622 | TGAGGCGAAAAAAAA CGGTGATCGAA TTAAC TTGGATCACCG AAAAAGGTTGGGAGA Shewmr4_1213 1415065 - 1414631 - | CopG family transcriptional regulator Shewmr4_1214 1415807 - 1415025 - | hypothetical protein Shewmr4_1215 1416339 - 1416797 + | acetyltransferase TERM 1676 1416808 - 1416836 + F 93 -11.9 -3.72632 | TTTAGCATTGCCATA TTCAGGATAAGTT GAC GGCTTATCCTGAA TTATTGGGTCTGTAT Shewmr4_1216 1417033 - 1417242 + | hypothetical protein Shewmr4_1217 1417379 - 1417681 + | NrfJ-related protein TERM 1677 1417718 - 1417750 + F 100 -13.5 -3.53012 | opp_overlap 1417723, overlap 1417723 TGTTGCGATGAGTTC CTAAACCGCCTCG CCTTGTT CGAGGCGGTTTTG TTTACAGCGACAAAC TERM 1678 1417723 - 1417745 + F 100 -12 -4.86731 | opp_overlap 1417723, overlap 1417718 CGATGAGTTCCTAAA CCGCCTCG CCTTGTT CGAGGCGG TTTTGTTTACAGCGA TERM 1679 1417745 - 1417723 - f 91 -12 -3.56092 | opp_overlap 1417723 1417718 CGATGAGTTCCTAAA CCGCCTCG CCTTGTT CGAGGCGG TTTTGTTTACAGCGA Shewmr4_1218 1417849 - 1418370 + | acetyltransferase Shewmr4_1219 1418434 - 1418964 + | acetyltransferase TERM 1680 1419018 - 1419037 + T 95 -4.8 -5.84381 | opp_overlap 1419018 AGAGTAATAAAAAAA CCGCCTCG TTTC CTTGGCGG TTTTTTTATTGGTCA TERM 1681 1419037 - 1419018 - T 95 -4.8 -5.85737 | opp_overlap 1419018 AGAGTAATAAAAAAA CCGCCTCG TTTC CTTGGCGG TTTTTTTATTGGTCA Shewmr4_1220 1419757 - 1419062 - | pirin domain-containing protein TERM 1682 1419325 - 1419345 + g 77 -9.6 -3.72695 | CACCCGTTGGGGTGA CCACGGCG GTCAG CGCCGAGG TTTGCTCGAAGGCCT Shewmr4_1221 1420211 - 1419768 - | DoxX family protein TERM 1683 1420333 - 1420343 + H 70 -5.4 -4.41616 | GAAAGAAAATCGGAA CCTT TTC AAGG TTTATTTCAAAAAAT TERM 1684 1421183 - 1421171 - g 71 -10.5 -3.07962 | opp_overlap 1421171 1421169 GTTGAGATCCCAAGA CCGGC GCA GCCGG TGTTTCTCGCATGGC TERM 1685 1421171 - 1421183 + G 77 -10.5 -3.53733 | opp_overlap 1421171, overlap 1421169 GTTGAGATCCCAAGA CCGGC GCA GCCGG TGTTTCTCGCATGGC TERM 1686 1421236 - 1421213 - g 71 -5.2 -4.50159 | CGCAAGGGAAATAAA GGCAAAGCGC AGGC GTGGTTTGCC GAACGTTTACCCCAT Shewmr4_1222 1420376 - 1421269 + | LysR family transcriptional regulator TERM 1687 1421662 - 1421678 + T 75 -8.7 -3.67296 | AATCCCTGACACTGG GCGCTTA CAC TGAGCGC TTTACATGGCTGGTG Shewmr4_1223 1423417 - 1421666 - | metallophosphoesterase TERM 1688 1423471 - 1423485 + r 100 -11.4 -4.06502 | opp_overlap 1423471 CCCAAAAACAAGAAA GGGAGC CAA GCTCCC TTTACTTTAACAATG TERM 1689 1423485 - 1423471 - R 100 -11.4 -4.76802 | opp_overlap 1423471 CCCAAAAACAAGAAA GGGAGC CAA GCTCCC TTTACTTTAACAATG Shewmr4_1224 1424606 - 1423515 - | hypothetical protein TERM 1690 1424718 - 1424728 + H 76 -6.8 -4.43012 | TGTATAATTCGCCGC CCTG TTG CAGG TTTTGGTGTTGAGGT Shewmr4_1225 1424751 - 1425872 + | hypothetical protein TERM 1691 1426439 - 1426458 + G 70 -8.6 -3.73775 | gap 1, opp_overlap 1426438 1426435, overlap 1426442 ATGGCGTTAAAGTAT GAC-CCGAG ACG CTCGGTGTC TTTACTGGAGCTGGC Shewmr4_1226 1425905 - 1426693 + | type IV pilus biogenesis/stability protein PilW TERM 1692 1427508 - 1427487 - g 90 -10.1 -4.55721 | overlap 1427475 AAACGCGACACAAAA TGGCGCGAC CAAT ACCGCGCCA GTGCAGAACCAAACC TERM 1693 1427757 - 1427779 + G 73 -10.6 -3.25802 | opp_overlap 1427774, overlap 1427773 1427774 CGTGTCCACGTTTAC GGTTGATGGT AAA GCCATCAGCC TTGCTGAATTTCCTA Shewmr4_1227 1426690 - 1427832 + | hypothetical protein ispG 1427875 - 1428990 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1694 1429050 - 1429072 + F 72 -6.2 -4.38313 | opp_overlap 1429062, overlap 1429051 CTCAAGCCTTGAGCT AGACCCCG AAACCGA CGGGGTCA TTTTACGTTTAGTGT TERM 1695 1429051 - 1429071 + F 74 -9.7 -3.21904 | opp_overlap 1429062, overlap 1429050 TCAAGCCTTGAGCTA GACCCCG AAACCGA CGGGGTC ATTTTACGTTTAGTG Shewmr4_1229 1429150 - 1430427 + | histidyl-tRNA synthetase TERM 1696 1430716 - 1430679 - g 71 -5 -4.57569 | opp_overlap 1430697, overlap 1430691 TGAGTTTTCCAAAAA TCACGA-CCAAAAGGGCT ATCA AGCCCTGCTGGATC-TGA TCGTTGCGAAAACCG TERM 1697 1430704 - 1430691 - g 79 -8.1 -4.33708 | opp_overlap 1430697, overlap 1430679 AAATCACGACCAAAA GGGCT ATCA AGCCC TGCTGGATCTGATCG TERM 1698 1430989 - 1430975 - g 87 -10 -4.39571 | overlap 1430968 CGGATAAAGCGAAAA CCGCTT ACC AAGCGG CAATGGACAATGGCG Shewmr4_1230 1430440 - 1431060 + | hypothetical protein Shewmr4_1231 1431072 - 1432259 + | outer membrane protein assembly complex subunit YfgL TERM 1699 1432282 - 1432306 + F 100 -13.6 -5.06816 | TGTTATCCTTGTAGA GCCCCTGGAA GTGTG TTCCGGGGGC TTTTTATTGAAAAGT TERM 1700 1432306 - 1432320 + F 73 -3.6 -5.00616 | AGTGTGTTCCGGGGG CTTTTT ATT GAAAAG TTTTTTAGAGGCAAA TERM 1701 1432684 - 1432673 - g 81 -5.8 -5.02074 | GTAGCCGTCAAAAAA CCAC TTTC GTGG TGGCTAACAAGATTG engA 1432339 - 1433805 + | GTP-binding protein EngA TERM 1702 1433860 - 1433833 - T 74 -10 -3.09492 | opp_overlap 1433839, overlap 1433839 GGCTTAAGCTGAATA TAAAAAGGAACC CTAG GGTTCCTTTTTT TGTTGGCGCATTTTA TERM 1703 1433839 - 1433854 + T 100 -9 -5.7946 | opp_overlap 1433833 1433839 AGCTGAATATAAAAA GGAACC CTAG GGTTCC TTTTTTTGTTGGCGC TERM 1704 1433854 - 1433839 - T 100 -9 -5.09762 | opp_overlap 1433839, overlap 1433833 AGCTGAATATAAAAA GGAACC CTAG GGTTCC TTTTTTTGTTGGCGC xseA 1435299 - 1433953 - | exodeoxyribonuclease VII large subunit Shewmr4_1234 1435422 - 1436888 + | inositol-5-monophosphate dehydrogenase TERM 1705 1436893 - 1436933 + F 100 -13.4 -4.05033 | opp_overlap 1436902 1436903, overlap 1436902 1436903 CAGGTGCGTAAACGT TTGTGATAATGGGGCGGC GATAA GCCGCCCCGTTATTAAGA TTTGTATGCCCTCAA TERM 1706 1436902 - 1436924 + F 100 -14.1 -3.71991 | opp_overlap 1436902 1436903, overlap 1436893 1436903 AAACGTTTGTGATAA TGGGGCGGC GATAA GCCGCCCCG TTATTAAGATTTGTA TERM 1707 1436924 - 1436902 - f 89 -11.9 -3.2964 | opp_overlap 1436902 1436893 1436903, overlap 1436903 AAACGTTTGTGATAA TGGGGCGGC GATAA GCCGCCCCG TTATTAAGATTTGTA TERM 1708 1436923 - 1436903 - f 100 -15.4 -2.57463 | opp_overlap 1436903 1436902 1436893, overlap 1436902 AACGTTTGTGATAAT GGGGCGGC GATAA GCCGCCCC GTTATTAAGATTTGT TERM 1709 1436903 - 1436923 + F 100 -15.4 -2.82471 | opp_overlap 1436902 1436903, overlap 1436902 1436893 AACGTTTGTGATAAT GGGGCGGC GATAA GCCGCCCC GTTATTAAGATTTGT guaA 1437006 - 1438583 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1710 1438633 - 1438619 - f 87 -8.5 -4.45945 | opp_overlap 1438619, overlap 1438614 ATGCATTAACGAAAA GGCGC CAAGT GCGCC TTTTTTGTTGGTTAT TERM 1711 1438619 - 1438633 + F 100 -8.5 -5.57396 | opp_overlap 1438619 1438614 ATGCATTAACGAAAA GGCGC CAAGT GCGCC TTTTTTGTTGGTTAT Shewmr4_1236 1438690 - 1439448 + | CMP/dCMP deaminase, zinc-binding Shewmr4_1237 1441324 - 1439888 - | lytic transglycosylase, catalytic TERM 1712 1440300 - 1440288 - G 82 -10.5 -3.91984 | opp_overlap 1440285 ATATCCCGTAAATAA GCGGC GCC GCCGC GAATACTCTCTTCCG TERM 1713 1441090 - 1441104 + g 73 -6.4 -4.56775 | AGAGTTCGGCGCGGT TGGTGT AGG GCACCA TTTTTAAGGGCACAT TERM 1714 1442646 - 1442622 - g 87 -8.6 -4.75174 | TATCGAATTTAAAAA TCCCAGGGTT TGTAC AACCATGGGA AGGTAGCTACGGTAA TERM 1715 1442890 - 1442879 - g 72 -3.6 -4.88736 | overlap 1442886 1442887 GAGCACGTACAAAAA GGCG AAAT CACC GTGGGTGCTAAGCTG Shewmr4_1238 1441604 - 1445485 + | phosphoribosylformylglycinamidine synthase TERM 1716 1445546 - 1445527 - f 100 -12.2 -5.54894 | opp_overlap 1445527 AAGTGAGCAAAAAAA GGAGCGAA ATTT TTCGCTCC TTTTTTATATATAAA TERM 1717 1445527 - 1445546 + F 100 -12.2 -5.4251 | opp_overlap 1445527 AAGTGAGCAAAAAAA GGAGCGAA ATTT TTCGCTCC TTTTTTATATATAAA TERM 1718 1445757 - 1445781 + F 84 -11.3 -3.09831 | opp_overlap 1445757, overlap 1445754 ACATAAAAGCAAAAA GCCCCCAACTC ATC GAGAAGGGGGC TCGTTTTGCGCTAAC TERM 1719 1445781 - 1445757 - f 100 -11.3 -5.15526 | opp_overlap 1445757 1445754 ACATAAAAGCAAAAA GCCCCCAACTC ATC GAGAAGGGGGC TCGTTTTGCGCTAAC Shewmr4_1239 1446727 - 1448283 + | cytochrome bd ubiquinol oxidase, subunit I Shewmr4_1240 1448299 - 1449438 + | cytochrome d ubiquinol oxidase, subunit II Shewmr4_1241 1449457 - 1449573 + | cyd operon protein YbgT TERM 1720 1449606 - 1449621 + T 100 -11.8 -5.4505 | opp_overlap 1449606 CTGAACCCTTTAAAA CCCCGC AACA GCGGGG TTTTTTATTACCACG TERM 1721 1449621 - 1449606 - T 100 -11.8 -4.11484 | opp_overlap 1449606 CTGAACCCTTTAAAA CCCCGC AACA GCGGGG TTTTTTATTACCACG Shewmr4_1242 1449965 - 1449813 - | serine/arginine repetitive matrix 1 TERM 1722 1450079 - 1450102 + r 79 -11 -3.14564 | opp_overlap 1450081, overlap 1450081 GTAGAAAGTCAAAAA AATACCGCCC AAGT GGGCGGTATC TTAGTAAAGAAATGA TERM 1723 1450100 - 1450081 - R 100 -13.6 -5.59564 | opp_overlap 1450079 1450081 AGAAAGTCAAAAAAA TACCGCCC AAGT GGGCGGTA TCTTAGTAAAGAAAT TERM 1724 1450081 - 1450100 + r 100 -13.6 -3.13522 | opp_overlap 1450081, overlap 1450079 AGAAAGTCAAAAAAA TACCGCCC AAGT GGGCGGTA TCTTAGTAAAGAAAT Shewmr4_1243 1452127 - 1450124 - | methyl-accepting chemotaxis sensory transducer TERM 1725 1450686 - 1450702 + g 70 -8.7 -3.55548 | GCCTGATGGCTACTA CTGAGCT GTT GGCTCAG TTTCAACAGATCTTG TERM 1726 1452555 - 1452535 - g 80 -9.7 -4.00348 | opp_overlap 1452531 1452535 CTTGAATTAACTAAA GTGCCCACC GAT GATGAGCAC TTTGTTGCTTTAAAA Shewmr4_1244 1452385 - 1452630 + | hypothetical protein Shewmr4_1245 1455695 - 1452615 - | acriflavin resistance protein TERM 1727 1454095 - 1454085 - G 76 -6.8 -4.5442 | GCCGGAAGCATAAAA CCCT AGC AGGG GAATTATCCCGATAA Shewmr4_1246 1456819 - 1455698 - | RND family efflux transporter MFP subunit TERM 1728 1456861 - 1456904 + H 100 -10.5 -4.55491 | opp_overlap 1456860 1456863 1456865, overlap 1456860 TTAAGTTTATGTAAC TAGACTTGCTAGTCTAGTT GTGCGG AACTAGACTGTCTAGTCTA TTTTGTGCTTAACTA TERM 1729 1457015 - 1457004 - g 78 -5.8 -4.88795 | opp_overlap 1457014 AGTGAACAAAAGAAA CAGC AAGT GCTG GTGGCGGCCATTGAT TERM 1730 1457312 - 1457333 + G 73 -2.9 -5.00616 | overlap 1457315 GGCGCAATCTGAGAG CCACCCTGA AGTT TCAAGGTTG TTTTTTGAGGCGGGG Shewmr4_1247 1456956 - 1457576 + | TetR family transcriptional regulator TERM 1731 1458212 - 1458228 + G 71 -6.5 -4.19953 | overlap 1458213 ATGTATGCCTTCGAG TCGGGCA ATA TGCTCGG TTTTGGCGTTGCGTA Shewmr4_1248 1457690 - 1458631 + | hypothetical protein TERM 1732 1458635 - 1458673 + T 100 -13.8 -4.91109 | opp_overlap 1458635, overlap 1458638 TTCCGATTTTAATTA CTGGCCCAGCATGGCCTC TTT GAGGCTCTTCTGGGCTGG TTTTTCTCCTAGCCA TERM 1733 1458638 - 1458670 + T 100 -14.1 -3.34102 | opp_overlap 1458635, overlap 1458635 CGATTTTAATTACTG GCCCAGCATGGCCTC TTT GAGGCTCTTCTGGGC TGGTTTTTCTCCTAG Shewmr4_1249 1459192 - 1458632 - | hypothetical protein TERM 1734 1458779 - 1458802 + g 79 -8.9 -4.17002 | GCCACGGCTTTTGTT GGCGATCAA GGTGAA TTGGTCGCC TTCTTTGATTTCATC Shewmr4_1250 1459906 - 1459427 - | hypothetical protein TERM 1735 1460055 - 1460081 + r 79 -10.8 -2.92026 | overlap 1460057 AGGGACTCGAACCCC GATCGGCCGCTT AGG AGGCGGCTGCTC TATCCTGTTGAGCTA TERM 1736 1460107 - 1460122 + r 75 -5.4 -4.84539 | AGCTATGAAGAGACG CCAGTG ATTA TACTGG TTTTATCTTTGATTA Shewmr4_1251 1461325 - 1460159 - | hypothetical protein Shewmr4_1252 1461565 - 1462197 + | hypothetical protein Shewmr4_1253 1462194 - 1462643 + | hypothetical protein TERM 1737 1462701 - 1462733 + T 100 -13.5 -4.07562 | opp_overlap 1462701 1462706, overlap 1462706 TGCTGTACCGATAAA CAAAAGCCGCACTCA GTT TTAGCGCGGCTTTTG TTTATATCCCGTTTA TERM 1738 1462733 - 1462701 - T 100 -15.7 -3.91897 | opp_overlap 1462701 1462706, overlap 1462706 TGCTGTACCGATAAA CAAAAGCCGCACTCA GTT TTAGCGCGGCTTTTG TTTATATCCCGTTTA TERM 1739 1462706 - 1462728 + T 95 -7.6 -5.05113 | opp_overlap 1462701 1462706, overlap 1462701 TACCGATAAACAAAA GCCGCACTCA GTT TTAGCGCGGC TTTTGTTTATATCCC TERM 1740 1462728 - 1462706 - T 100 -9.8 -5.0065 | opp_overlap 1462706 1462701, overlap 1462701 TACCGATAAACAAAA GCCGCACTCA GTT TTAGCGCGGC TTTTGTTTATATCCC Shewmr4_1254 1463190 - 1462765 - | FlgN family protein TERM 1741 1463119 - 1463082 - G 71 -5.5 -4.4715 | opp_overlap 1463089 1463114, overlap 1463088 CCGCAAGCGATAAAA GCAAATCGGCGTTTTGG TCAA CCAAAGCGCCTTTTTCC TTGAGAATAATCTGT TERM 1742 1463089 - 1463112 + g 100 -13.2 -4.86621 | opp_overlap 1463088 1463082 CGATAAAAGCAAATC GGCGTTTTGG TCAA CCAAAGCGCC TTTTTCCTTGAGAAT Shewmr4_1255 1463519 - 1463193 - | anti-sigma-28 factor, FlgM TERM 1743 1463238 - 1463250 + g 71 -7.7 -4.1196 | TTCGAAGCTGGCAAT GTTGG CCG CCAAC TTTTCGGGATCAATT flgA 1464302 - 1463595 - | flagellar basal body P-ring biosynthesis protein FlgA Shewmr4_1257 1464508 - 1465428 + | response regulator receiver modulated CheW protein Shewmr4_1258 1465530 - 1466369 + | MCP methyltransferase, CheR-type TERM 1744 1466391 - 1466410 + F 100 -10.8 -5.00616 | opp_overlap 1466391 GATATTAAATAAAAA TTACCGAC AATA GTCGGTAA TTTTTTACCCCGAAA TERM 1745 1466410 - 1466391 - f 100 -10.8 -5.35815 | opp_overlap 1466391 GATATTAAATAAAAA TTACCGAC AATA GTCGGTAA TTTTTTACCCCGAAA TERM 1746 1466683 - 1466663 - g 70 -9.1 -3.53012 | TTCTGCGGCCTTAAA TGTTGCTAA AAC TCAGCAACA GCAACGCAATAGCCT flgB 1466514 - 1466921 + | flagellar basal body rod protein FlgB flgC 1466924 - 1467340 + | flagellar basal body rod protein FlgC flgD 1467365 - 1468135 + | flagellar basal body rod modification protein flgE 1468198 - 1469559 + | flagellar hook protein FlgE TERM 1747 1469575 - 1469608 + F 100 -12.5 -3.66256 | overlap 1469573 1469576 GCTGGTTTCTCCCTT TTCTAAGTGTTGCCG CTGG CGGCAACACTTAGCC TCTTTTAGCGCTATA TERM 1748 1469576 - 1469607 + F 100 -16 -2.79272 | overlap 1469575 1469573 CTGGTTTCTCCCTTT TCTAAGTGTTGCCG CTGG CGGCAACACTTAGC CTCTTTTAGCGCTAT flgF 1469732 - 1470475 + | flagellar basal body rod protein FlgF flgG 1470486 - 1471274 + | flagellar basal body rod protein FlgG flgH 1471287 - 1471961 + | flagellar basal body L-ring protein TERM 1749 1471999 - 1472011 + G 76 -7.7 -4.30014 | ACTGATTTTAGCGGT TGCCA TGC TGGCA TTTTCACTTCCTAGC flgI 1471973 - 1473064 + | flagellar basal body P-ring protein TERM 1750 1473187 - 1473165 - g 70 -9.1 -3.59024 | TCAGAAAGATGAGAA GGGCGCCTT GAAAA AAGTCGCCC AACAATTTGAAGGCG flgJ 1473082 - 1474236 + | peptidoglycan hydrolase Shewmr4_1268 1474277 - 1476202 + | flagellar hook-associated protein FlgK flgL 1476214 - 1477422 + | flagellar hook-associated protein FlgL TERM 1751 1478382 - 1478363 - g 79 -7.8 -4.45765 | GGTAAAATCAATAAA GCAGGCAC AGGT GTGACTGC CACGGCTCAAACAAC Shewmr4_1270 1477679 - 1479136 + | flagellin domain-containing protein TERM 1752 1479192 - 1479224 + T 100 -13.6 -3.63744 | opp_overlap 1479197, overlap 1479197 ACACTTATTTCCACC TAAAACGCCTGATG CACCT CATCGGGCGTTTTG TATTTTAAGGCCAAA TERM 1753 1479197 - 1479219 + T 100 -11.3 -4.89567 | opp_overlap 1479197, overlap 1479192 TATTTCCACCTAAAA CGCCTGATG CACCT CATCGGGCG TTTTGTATTTTAAGG TERM 1754 1479219 - 1479197 - T 83 -9.1 -4.18494 | opp_overlap 1479197 1479192 TATTTCCACCTAAAA CGCCTGATG CACCT CATCGGGCG TTTTGTATTTTAAGG Shewmr4_1272 1479965 - 1479615 - | transposase TERM 1755 1480901 - 1480882 - g 79 -7.8 -4.45765 | GGTAAAATCAATAAA GCAGGCAC AGGT GTGACTGC CACGGCTCAAACAAC Shewmr4_1273 1480198 - 1481652 + | flagellin domain-containing protein TERM 1756 1481687 - 1481710 + F 100 -13.2 -4.78848 | opp_overlap 1481684 1481687 TAGTGGAGTAGATTA GGGAGAGTCG GTCA CGATTCTCCC TTTTATCTTTAAAAG TERM 1757 1481710 - 1481687 - f 76 -11 -2.66634 | opp_overlap 1481687, overlap 1481684 TAGTGGAGTAGATTA GGGAGAGTCG GTCA CGATTCTCCC TTTTATCTTTAAAAG Shewmr4_1274 1481831 - 1482223 + | flagellar protein FlaG protein Shewmr4_1275 1482264 - 1483631 + | flagellar hook-associated 2 domain-containing protein Shewmr4_1276 1483668 - 1484021 + | hypothetical protein fliS 1484028 - 1484429 + | flagellar protein FliS TERM 1758 1484482 - 1484464 - f 100 -8.8 -4.89233 | opp_overlap 1484465, overlap 1484465 GATCAACAGGAAAAA GGACGCAC CGA GTGCGTCT TTTTTTTGGCTTTCG TERM 1759 1484481 - 1484465 - f 100 -12.3 -3.52455 | opp_overlap 1484465, overlap 1484464 ATCAACAGGAAAAAG GACGCAC CGA GTGCGTC TTTTTTTTGGCTTTC TERM 1760 1484465 - 1484481 + F 100 -12.3 -5.89947 | opp_overlap 1484464 1484465 ATCAACAGGAAAAAG GACGCAC CGA GTGCGTC TTTTTTTTGGCTTTC Shewmr4_1278 1484727 - 1486160 + | sigma-54 dependent trancsriptional regulator TERM 1761 1486265 - 1486234 - f 90 -11.7 -3.63305 | opp_overlap 1486232 CATAGAATCTGCAAA CACTCCGTCAGAA GCAATT TTTTGACGGAGTG ACTATGTCAGCCCAT Shewmr4_1279 1486269 - 1487351 + | PAS/PAC sensor signal transduction histidine kinase Shewmr4_1280 1487344 - 1488684 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1762 1488741 - 1488709 - f 80 -10.5 -3.53811 | opp_overlap 1488713, overlap 1488713 TGTACCTTGTCTAAA GCCATTGCCACTGGG TTA CCCTGTGGCAATTTC ATGTCTGACGATTTC TERM 1763 1488737 - 1488713 - f 95 -14.3 -2.64155 | opp_overlap 1488713, overlap 1488709 CCTTGTCTAAAGCCA TTGCCACTGGG TTA CCCTGTGGCAA TTTCATGTCTGACGA TERM 1764 1488713 - 1488737 + F 100 -14.3 -3.88498 | opp_overlap 1488709 1488713 CCTTGTCTAAAGCCA TTGCCACTGGG TTA CCCTGTGGCAA TTTCATGTCTGACGA TERM 1765 1488771 - 1488798 + F 82 -8.4 -4.2535 | CTTCACTTCTTTTTA GCACGGCAAAGT GAAA ACTTGGCCATGC TTTTGCATATCCTGT Shewmr4_1281 1488862 - 1489200 + | flagellar hook-basal body complex subunit FliE fliF 1489245 - 1490930 + | flagellar MS-ring protein TERM 1766 1491545 - 1491514 - g 71 -7.2 -4.09519 | gap 1 ATCATGGAGAAACAA TTCGCCGGCCAAGGC GGT GCGCAGGC-GGCGAA GATGGGCGGCCTAAA fliG 1490923 - 1491969 + | flagellar motor switch protein G fliH 1491956 - 1492906 + | flagellar assembly protein H fliI 1492875 - 1494212 + | flagellum-specific ATP synthase Shewmr4_1286 1494224 - 1494670 + | flagellar export protein FliJ Shewmr4_1287 1494813 - 1496573 + | flagellar hook-length control protein TERM 1767 1496872 - 1496847 - g 72 -9.7 -3.47573 | gap 1, opp_overlap 1496851 1496858 CGACGGAGACGACAA CGCCAGCCGCCG ATG CGGCAA-TGGCG GCCTATGTGCCAATG fliL 1496657 - 1497184 + | flagellar basal body-associated protein FliL fliM 1497225 - 1498256 + | flagellar motor switch protein FliM fliN 1498269 - 1498643 + | flagellar motor switch protein TERM 1768 1498787 - 1498815 + G 91 -11 -4.33487 | gap 1, opp_overlap 1498786 1498787, overlap 1498784 TGAACCTTCGCAAAT GGCCGCCGCAGCG AGCA TGCT-CGGCGGTC TTATTTTAGTGTTAT TERM 1769 1498840 - 1498865 + G 71 -7.5 -4.10552 | TGTTATTGCTTATCT TCGCCTTAGCG TACC TGCTGCGGCGA TTTAATTTAGTGCCG Shewmr4_1291 1498677 - 1499084 + | flagellar biosynthesis protein, FliO fliP 1499081 - 1499827 + | flagellar biosynthesis protein FliP Shewmr4_1293 1499845 - 1500114 + | flagellar biosynthetic protein FliQ fliR 1500119 - 1500916 + | flagellar biosynthesis protein FliR TERM 1770 1501018 - 1501006 - g 78 -6.2 -4.83615 | overlap 1501008 CAGGCGCGAGAAAAA GGGC AGGTA GCCC GCTCAAAAGAGTTAG TERM 1771 1501137 - 1501147 + G 71 -6.8 -4.18018 | CGTCTTCACCATGGA TCGC GCT GCGA TTTTCGATACGAACC TERM 1772 1501778 - 1501793 + G 74 -4.6 -4.79352 | overlap 1501779 1501790 TTAAATACGATGTGA AGCGCT CTGC AGCGCC TTTTGTTATCGCTAA flhB 1500934 - 1502064 + | flagellar biosynthesis protein FlhB TERM 1773 1503102 - 1503115 + G 70 -4.5 -4.70879 | overlap 1503103 GTATTGTGCCAGGCA TGCCA CACA TGGCG TTTTTAAGCTTTGCC flhA 1502183 - 1504282 + | flagellar biosynthesis protein FlhA flhF 1504294 - 1505670 + | flagellar biosynthesis regulator FlhF Shewmr4_1298 1505675 - 1506556 + | cobyrinic acid a,c-diamide synthase fliA 1506549 - 1507262 + | flagellar biosynthesis sigma factor Shewmr4_1300 1507310 - 1507693 + | response regulator receiver protein Shewmr4_1301 1507707 - 1508444 + | chemotaxis phosphatase, CheZ TERM 1774 1509474 - 1509454 - g 81 -14.1 -2.64155 | overlap 1509450 CCGCTCCTAAAGCCA GTGTTGCTG CAC CAGCAACAC CTCCTGCGGTAAAAG TERM 1775 1509538 - 1509519 - g 86 -9.2 -4.56597 | overlap 1509531 1509534 GCGGTTGCTGAAAAA GCCCCTGC TAAA GCAGCGGC AGCAGCCTCTGCTAA TERM 1776 1509550 - 1509531 - g 70 -9.2 -3.5394 | overlap 1509519 1509534 AAAGCCCCTGCTAAA GCAGCGGC AGCA GCCTCTGC TAACGTACCTCAAGG Shewmr4_1302 1508460 - 1510742 + | CheA signal transduction histidine kinases Shewmr4_1303 1510761 - 1511879 + | chemotaxis-specific methylesterase Shewmr4_1304 1511905 - 1512405 + | hypothetical protein Shewmr4_1305 1512468 - 1513259 + | cobyrinic acid a,c-diamide synthase TERM 1777 1513246 - 1513274 + G 95 -5.4 -5.57054 | GGGAGTTTGGCCATG TCAAAATCGGTT GATGA AACTGTTTTTGA TTTTTTTGAATTATT TERM 1778 1513752 - 1513736 - g 70 -8.7 -3.53722 | TTGACATTGAGACAA CACCCGA GAC TCAGGTG GGGTTTGCCCCTCCA Shewmr4_1306 1513243 - 1514250 + | CheW protein Shewmr4_1307 1514258 - 1514752 + | CheW protein TERM 1779 1514765 - 1514792 + F 90 -11.4 -3.67622 | opp_overlap 1514768 1514773, overlap 1514762 1514766 1514768 TAAGCTTCCATGATG AGACGACAGATT AGTT AATCTGTCGTCC TTACTTTTCACGATA TERM 1780 1514766 - 1514791 + F 100 -14.9 -2.80091 | opp_overlap 1514768 1514773, overlap 1514765 1514762 1514768 AAGCTTCCATGATGA GACGACAGATT AGTT AATCTGTCGTC CTTACTTTTCACGAT TERM 1781 1514768 - 1514789 + F 83 -11.7 -2.94333 | opp_overlap 1514768 1514773, overlap 1514766 1514765 1514762 GCTTCCATGATGAGA CGACAGATT AGTT AATCTGTCG TCCTTACTTTTCACG TERM 1782 1514789 - 1514768 - f 81 -11.7 -2.82516 | opp_overlap 1514768 1514766 1514765 1514762, overlap 1514773 GCTTCCATGATGAGA CGACAGATT AGTT AATCTGTCG TCCTTACTTTTCACG Shewmr4_1308 1514907 - 1515305 + | hypothetical protein Shewmr4_1309 1515644 - 1515333 - | FlhB domain-containing protein Shewmr4_1310 1517672 - 1515657 - | hypothetical protein TERM 1783 1516450 - 1516463 + g 86 -6.7 -4.9218 | AGCGGTAATGCGCCT GCCTT GGTA AAGGC TTTTTGTAATACCTC Shewmr4_1311 1517894 - 1518679 + | VacJ family lipoprotein Shewmr4_1312 1518801 - 1519904 + | response regulator receiver protein TERM 1784 1520067 - 1520038 - T 100 -12.3 -4.00468 | opp_overlap 1520038 1520045, overlap 1520045 ATCATAAGCTATAAA TAAAAAACGCTGC CATG GCAGCGTTTTTTT ATTGATTGAACCTAA TERM 1785 1520038 - 1520068 + T 81 -10.7 -3.34895 | gap 1, opp_overlap 1520038 1520045, overlap 1520045 ATCATAAGCTATAAA TAAAAAA-CGCTGC CATG GCAGCGTTTTTTTA TTGATTGAACCTAAA TERM 1786 1520060 - 1520045 - T 100 -10.4 -5.72622 | opp_overlap 1520038 1520045, overlap 1520038 GCTATAAATAAAAAA CGCTGC CATG GCAGCG TTTTTTTATTGATTG TERM 1787 1520045 - 1520060 + T 100 -10.4 -5.87996 | opp_overlap 1520045 1520038, overlap 1520038 GCTATAAATAAAAAA CGCTGC CATG GCAGCG TTTTTTTATTGATTG Shewmr4_1313 1521558 - 1520089 - | amino acid/peptide transporter TERM 1788 1520912 - 1520922 + g 72 -4 -4.82901 | opp_overlap 1520912 GGAGTTCTACCAATA TTAC CGA GTAA TTTTTGTGCAAACAG TERM 1789 1521091 - 1521078 - G 74 -6.7 -4.431 | overlap 1521086 1521089 TACCCATGTAGAAAA TGGTG AAAG CACCA TCACGGCGATGGTCG TERM 1790 1521096 - 1521108 + g 73 -9.1 -3.78034 | opp_overlap 1521089 1521086 TGAAAGCACCATCAC GGCGA TGG TCGCC TTCTTCGTATAGGTC TERM 1791 1522445 - 1522424 - g 75 -10.3 -3.36878 | TTTATTGATTTAGAA GGCATTTTT CAAG AAAAATGCC CAAACAAACGTTGCC Shewmr4_1314 1522031 - 1522531 + | transcription antitermination protein nusG TERM 1792 1523369 - 1523353 - g 77 -8.7 -4.04355 | opp_overlap 1523352 AAAAAATACATCAAA GCGGTTC CCA AAACCGC AATATTAGTTGGCAT Shewmr4_1315 1523323 - 1525836 + | polysaccharide export protein TERM 1793 1525843 - 1525890 + F 71 -8.4 -3.51934 | gap 1, opp_overlap 1525846 1525847 1525874, overlap 1525841 1525846 GGGATATAGGAGATA GAACGCCACTGCGTGGC-TCTAG AAT CTAGAAGTCGCGTAGCGACGTGC TCTTTCTAGCAGGGC TERM 1794 1525886 - 1525874 - f 73 -9.1 -3.45054 | opp_overlap 1525846 1525843 1525841, overlap 1525846 CTCTAGAATCTAGAA GTCGC GTA GCGAC GTGCTCTTTCTAGCA TERM 1795 1525899 - 1525919 + F 74 -4.6 -4.84359 | overlap 1525899 1525900 GACGTGCTCTTTCTA GCAGGGCG CAGCC CGCTCTGG TTTTTCTAGAAGTCG Shewmr4_1316 1525977 - 1526330 + | hypothetical protein TERM 1796 1526382 - 1526394 + F 75 -9.1 -3.63627 | opp_overlap 1526382 1526381 TTCGGCCTCTAGAAC GCCAC TAC GTGGC TTTAGAATCTAGAAG TERM 1797 1526421 - 1526409 - f 73 -9.1 -3.45054 | opp_overlap 1526412 CTTTAGAATCTAGAA GTCGC GAA GCGAC GCTCTGCTCTTTCTA TERM 1798 1526500 - 1526481 - f 100 -12.8 -3.48276 | TTTGCCTTTATAGAA GCGCAGCG CTCT CGCCGCGC AGCGTACTAGAATCT Shewmr4_1317 1526532 - 1527518 + | lipopolysaccharide biosynthesis TERM 1799 1528556 - 1528576 + G 73 -9.1 -3.76482 | opp_overlap 1528556 1528555 1528552 1528558 AACAAAATTTAGAAG TAGTGCAGA CTA TTTGCACTA TTCTTGATGCTCTCG Shewmr4_1318 1527742 - 1528821 + | dTDP-glucose 4,6 dehydratase Shewmr4_1319 1528892 - 1529767 + | glucose-1-phosphate thymidylyltransferase TERM 1800 1530076 - 1530086 + G 70 -3.2 -4.82901 | TATATCAGCGCGCCT TTGG TTG CCGA TTTTTATCAACAAGC TERM 1801 1530811 - 1530834 + G 76 -6 -4.62471 | overlap 1530815 AATTTGAATTTGTTG CAAGTCACTG GCCG CAGTGATCTG TTTTTAAAGCTTGAG Shewmr4_1320 1529773 - 1531200 + | polysaccharide biosynthesis protein Shewmr4_1321 1531231 - 1532340 + | DegT/DnrJ/EryC1/StrS aminotransferase Shewmr4_1322 1532345 - 1532920 + | acetyltransferase Shewmr4_1323 1532914 - 1534098 + | hypothetical protein TERM 1802 1534507 - 1534560 + F 71 -9.8 -2.57985 | gap 1, opp_overlap 1534506 1534520, overlap 1534506 1534513 1534552 AGATTTATTGATAAT GTCTATCGGACAATTCATCAATCTC CATTT GAGCTTGATGAA-TGTCCCGTTGAC TGGGTTGGATTATAA TERM 1803 1534548 - 1534520 - f 71 -9 -3.32963 | opp_overlap 1534513 1534507, overlap 1534506 ATGTCTATCGGACAA TTCATCAATCTC CATTT GAGCTTGATGAA TGTCCCGTTGACTGG TERM 1804 1535479 - 1535497 + G 70 -2.4 -4.90869 | overlap 1535480 TAGAAGGAATGTGAA GTCAGAAC CGT GTTTTGAA TTTTTAATTAATACT TERM 1805 1535780 - 1535723 - g 74 -4.5 -4.75309 | gap 1, opp_overlap 1535735, overlap 1535725 1535733 1535735 TTAAATCCAATAAAA GATCCGAATATA-CCTTACTTATTTATT TTT AATAGATAAGTAAGGTTATCTTCATAAC ATAGTTTTATATAGG TERM 1806 1535735 - 1535767 + G 93 -14.5 -3.71552 | opp_overlap 1535733 1535725 1535723 1535735 AAAGATCCGAATATA CCTTACTTATTTATT TTT AATAGATAAGTAAGG TTATCTTCATAACAT TERM 1807 1535767 - 1535735 - g 77 -12.3 -3.10901 | opp_overlap 1535735, overlap 1535733 1535725 1535723 AAAGATCCGAATATA CCTTACTTATTTATT TTT AATAGATAAGTAAGG TTATCTTCATAACAT Shewmr4_1324 1534733 - 1535761 + | hypothetical protein TERM 1808 1536326 - 1536336 + G 71 -5.4 -4.56597 | ATAAAGAAGATTATG CAAC ATG GTTG TTTTTAACAAAAAAG Shewmr4_1325 1535803 - 1536570 + | glycosyl transferase family protein TERM 1809 1536890 - 1536901 + G 70 -3 -4.78107 | CTAAAAAAACCAACG CAAA AATA TTTG TTTTTCATCATAATG TERM 1810 1537488 - 1537501 + G 74 -3.8 -4.94972 | AGGCTACGATGTTGC CGGA TGTTCT TCCG TTTTTCGTTGTAATA Shewmr4_1326 1536574 - 1537668 + | hypothetical protein TERM 1811 1538192 - 1538208 + G 72 -3.7 -4.80882 | TTCTAAGTTTATCCA GTCTGAA GTA TTAAGAC TTTTTAATGTAAAAT Shewmr4_1327 1537665 - 1538675 + | glycosyl transferase, group 1 Shewmr4_1328 1538822 - 1540240 + | mannose-1-phosphate guanylyltransferase (GDP) TERM 1812 1540493 - 1540509 + G 73 -12.3 -2.60671 | overlap 1540490 CAGCCCATTTACTTT GGCGTTG TGC CAACGCC TGCATTAGCTTTTAT Shewmr4_1329 1540244 - 1541662 + | phosphoglucomutase/phosphomannomutase alpha/beta/subunit Shewmr4_1330 1541694 - 1542860 + | UDP-glucose 6-dehydrogenase TERM 1813 1542881 - 1542895 + F 100 -12.8 -3.28712 | overlap 1542870 GCCTGCGGTCAGAGC GCCCGC TTT GCGGGC TTATAGAGCGCAGCG TERM 1814 1543067 - 1543081 + G 80 -4.2 -5.08483 | AGAGTTTTGTTATGT CAGCAA ACA TCGCTG TTTTATTTACTTTTC TERM 1815 1544099 - 1544118 + G 78 -3.6 -5.10497 | overlap 1544100 GGCGTATTACTGCAT TTTTGCGT AGAG ACGTAAAG TTTTTTAAATCAATT Shewmr4_1331 1543063 - 1544136 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 1816 1544297 - 1544308 + G 84 -2.2 -5.67283 | TGGAATACCTCATAC CGCT TTTA AGTG TTTTTTGTTTAACTT TERM 1817 1544411 - 1544428 + G 71 -5.5 -4.48483 | overlap 1544407 1544412 TGCATGAAGGTGCAA TCCCACT GATT GGTGGGG TTTCTATTTATTGTA Shewmr4_1332 1544281 - 1545342 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 1818 1545365 - 1545384 + F 100 -9.3 -5.56372 | opp_overlap 1545365 ACTATTTTTGCAAAA GCCAGCT AACTTA AGCTGGC TTTTTGTTTTAATTT TERM 1819 1545384 - 1545365 - f 85 -9.3 -4.08945 | opp_overlap 1545365 ACTATTTTTGCAAAA GCCAGCT AACTTA AGCTGGC TTTTTGTTTTAATTT TERM 1820 1545589 - 1545605 + G 73 -2.9 -4.93296 | overlap 1545590 GGTTATATGCTGGAA TCCGC AATGGAA GCGGG TTTTTCTGCTGCTGG Shewmr4_1333 1545415 - 1546767 + | phosphoglucosamine mutase Shewmr4_1335 1548899 - 1548249 - | hypothetical protein TERM 1821 1548452 - 1548468 + g 70 -8.7 -3.55866 | overlap 1548447 GGGTATTCGTGGGCT GGTGAGC ACT GTTCACC TTGGTTTCAATCTGG Shewmr4_1336 1549502 - 1548990 - | copper resistance lipoprotein NlpE TERM 1822 1550097 - 1550124 + G 76 -11.4 -3.20435 | opp_overlap 1550101, overlap 1550101 GTCGCGAATCATGCG CAAACTGATGGG GCGA CCCATGAGTTTG TTAGTGCCTACTTAG Shewmr4_1337 1549812 - 1551173 + | GAF sensor signal transduction histidine kinase Shewmr4_1338 1551247 - 1552185 + | glucose-1-phosphate thymidylyltransferase Shewmr4_1339 1552172 - 1552714 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 1823 1552690 - 1552739 + T 90 -11 -3.9122 | gap 2, opp_overlap 1552697 1552698, overlap 1552699 1552700 ACTTTCGGAGAGGGA TGCAAAAGCCGCCGTGAGTACCTA GCTT TAGGTACTCACGGCA--TTATGCA TTATTTGACAGACTC TERM 1824 1552734 - 1552697 - T 100 -13.5 -4.20531 | opp_overlap 1552690 1552699 1552700, overlap 1552698 GAGAGGGATGCAAAA GCCGCCGTGAGTACCTA GCTT TAGGTACTCACGGCATT ATGCATTATTTGACA TERM 1825 1552733 - 1552698 - T 100 -17 -3.11836 | opp_overlap 1552690 1552699 1552700, overlap 1552697 AGAGGGATGCAAAAG CCGCCGTGAGTACCTA GCTT TAGGTACTCACGGCAT TATGCATTATTTGAC TERM 1826 1552699 - 1552732 + T 100 -18.3 -3.49938 | opp_overlap 1552698 1552697, overlap 1552690 1552700 GAGGGATGCAAAAGC CGCCGTGAGTACCTA GCTT TAGGTACTCACGGCA TTATGCATTATTTGA TERM 1827 1552700 - 1552731 + T 100 -21.8 -2.6924 | opp_overlap 1552698 1552697, overlap 1552699 1552690 AGGGATGCAAAAGCC GCCGTGAGTACCTA GCTT TAGGTACTCACGGC ATTATGCATTATTTG Shewmr4_1340 1555103 - 1552740 - | protein of unknown function DUF940, membrane lipoprotein putative TERM 1828 1553609 - 1553589 - G 91 -9 -4.74917 | overlap 1553590 ACTAAACATATAAAA CCCTTCGG AACCG CCGAAGGA TTGGGACATGGTGGG TERM 1829 1553608 - 1553590 - G 75 -10.3 -3.43323 | overlap 1553589 CTAAACATATAAAAC CCTTCGG AACCG CCGAAGG ATTGGGACATGGTGG Shewmr4_1341 1555888 - 1555103 - | hypothetical protein TERM 1830 1555313 - 1555325 + g 70 -2.7 -4.77438 | overlap 1555312 1555310 ATCGAGTAAACCTGC TTGCT TCA AGTAA TTTTTACTGCTGGCT Shewmr4_1342 1556609 - 1555899 - | putative lipoprotein TERM 1831 1556736 - 1556717 - R 100 -11.4 -5.94713 | opp_overlap 1556719 ATGTCATAAAAAAAA CAACCGCC AAAA GGCGGCTG TTAACAATATGTACT Shewmr4_1343 1557003 - 1556761 - | hypothetical protein Shewmr4_1344 1558400 - 1557276 - | patatin TERM 1832 1558578 - 1558554 - R 100 -13.7 -5.63517 | opp_overlap 1558554 GCGGGAAATAAAAAA CGCACTTAAGT CAG ACTCAAGTGCG TTTGCATCTATATCG TERM 1833 1558554 - 1558578 + r 95 -11.5 -3.75535 | opp_overlap 1558554 GCGGGAAATAAAAAA CGCACTTAAGT CAG ACTCAAGTGCG TTTGCATCTATATCG Shewmr4_1345 1560378 - 1558666 - | prolyl-tRNA synthetase TERM 1834 1558724 - 1558738 + g 76 -3.4 -5.09762 | overlap 1558725 GGCACATCTTGCTTT TCACCG GTG CGGCGG TTTTTGTATTCAAAT TERM 1835 1560321 - 1560338 + g 70 -3.3 -4.89063 | overlap 1560323 1560324 ATTGATGGCTGATGA CTTCTGC ATTC GCAGGTG TTTCTTTTTGAGTAG Shewmr4_1346 1561178 - 1560549 - | hexapaptide repeat-containing transferase Shewmr4_1347 1561913 - 1561179 - | hypothetical protein TERM 1836 1561296 - 1561307 + g 78 -2.2 -5.24129 | TTGATATAACTTGGG GTCA TCTT TGGC TTTTTTATAGGCGGG Shewmr4_1348 1562388 - 1562008 - | putative lipoprotein TERM 1837 1562062 - 1562076 + g 82 -11.4 -3.69395 | GAGGGCGCGGCTGAC GCAGCC TTG GGCTGC TTCTTCCATCATCAC TERM 1838 1562437 - 1562417 - R 100 -16.9 -3.97019 | opp_overlap 1562433 ATTAAGGGTAAATAA GCGCAGTCC AAT GGACTGCGC GGTATCGAGCGATTT Shewmr4_1349 1563755 - 1562466 - | hypothetical protein Shewmr4_1350 1566829 - 1563755 - | amidohydrolase TERM 1839 1564658 - 1564672 + g 77 -10 -3.78775 | ACTCTGTTTGACGTT TTCGCC AAG GGCGAA TTTGATACTGGCAGG TERM 1840 1566950 - 1566984 + r 100 -18.9 -3.19642 | opp_overlap 1566959, overlap 1566959 GGGGATTCATTCAGG CATAAAAAAGCTCGC AGGGC GCGAGCTTTTTTATG TTACTCAGTGGTAAT TERM 1841 1566975 - 1566959 - R 100 -10.1 -5.28176 | opp_overlap 1566959 1566950 TTCAGGCATAAAAAA GCTCGCA GGG CGCGAGC TTTTTTATGTTACTC TERM 1842 1566959 - 1566975 + r 100 -9.4 -5.49569 | opp_overlap 1566959, overlap 1566950 TTCAGGCATAAAAAA GCTCGC AGGGC GCGAGC TTTTTTATGTTACTC Shewmr4_1351 1567423 - 1567031 - | histone family protein nucleoid-structuring protein H-NS TERM 1843 1567155 - 1567165 + g 80 -4.6 -5.08824 | TGGTATTTTGCTGGA CGTG GAG CGCG TTTTTTACCTGCAGC TERM 1844 1567524 - 1567514 - H 70 -2.6 -4.99947 | TCGAATCAAATAAAA TTAT GCA ATAA ACAGAAATTAAATAT TERM 1845 1567552 - 1567526 - H 71 -6.8 -4.23647 | opp_overlap 1567525 1567532, overlap 1567532 AAATTATGCAATAAA CAGAAATTAAAT ATT ATTTAATTTTTG AACTTTTTAAATATG TERM 1846 1567532 - 1567546 + H 71 -4.4 -4.7657 | opp_overlap 1567532 1567526, overlap 1567525 TGCAATAAACAGAAA TTAAAT ATT ATTTAA TTTTTGAACTTTTTA TERM 1847 1567602 - 1567587 - H 73 -5.4 -4.60255 | ATAAGTGTTCAAAAA TGTGGC CAAT ACCACA GACTTAAAAATGCAA TERM 1848 1567677 - 1567694 + H 87 -8.5 -4.45083 | AGTGGCTCTATCCTG CATTGGT GATG ACCAATG TTTTGTCCATGTACA Shewmr4_1352 1567733 - 1568482 + | electron transfer flavoprotein beta-subunit Shewmr4_1353 1568483 - 1569409 + | electron transfer flavoprotein, alpha subunit TERM 1849 1569432 - 1569471 + F 95 -7.8 -4.99035 | opp_overlap 1569433 1569434 1569437, overlap 1569434 1569437 TGTGATCTAAGTCAA AGTAAGCGGCTTTGCGGT GGCA ACTGCTTAGCCGCTTATG TTTTTATGTGCCTCA TERM 1850 1569434 - 1569469 + F 100 -12.6 -4.11744 | opp_overlap 1569434 1569433 1569437, overlap 1569432 1569437 TGATCTAAGTCAAAG TAAGCGGCTTTGCGGT GGCA ACTGCTTAGCCGCTTA TGTTTTTATGTGCCT TERM 1851 1569469 - 1569434 - f 75 -10.4 -2.8585 | opp_overlap 1569432 1569434 1569437, overlap 1569433 1569437 TGATCTAAGTCAAAG TAAGCGGCTTTGCGGT GGCA ACTGCTTAGCCGCTTA TGTTTTTATGTGCCT TERM 1852 1569437 - 1569466 + F 88 -9.9 -4.16226 | opp_overlap 1569434 1569433 1569437, overlap 1569434 1569432 TCTAAGTCAAAGTAA GCGGCTTTGCGGT GGCA ACTGCTTAGCCGC TTATGTTTTTATGTG Shewmr4_1354 1569781 - 1571349 + | Na+/H+ antiporter NhaC TERM 1853 1571444 - 1571411 - T 100 -15.5 -4.70659 | opp_overlap 1571416, overlap 1571416 CGCGAGAGTTAAAAA TAAAATAGGCCAGCA AGTA TGCTGGCCTATTTTT TTATTTATTACCCAA TERM 1854 1571439 - 1571416 - T 100 -15.4 -5.2853 | opp_overlap 1571416, overlap 1571411 GAGTTAAAAATAAAA TAGGCCAGCA AGTA TGCTGGCCTA TTTTTTTATTTATTA TERM 1855 1571416 - 1571439 + T 100 -15.4 -6.08342 | opp_overlap 1571416 1571411 GAGTTAAAAATAAAA TAGGCCAGCA AGTA TGCTGGCCTA TTTTTTTATTTATTA Shewmr4_1355 1573617 - 1571467 - | peptidyl-dipeptidase Dcp TERM 1856 1571505 - 1571533 + g 74 -4.6 -4.87786 | opp_overlap 1571504, overlap 1571528 1571529 GGCGGTTCAATAACC CTTCGGTGGT AGGCTCTTG ACCACGGAAG TTTTTGTAAGCTTCC TERM 1857 1571746 - 1571769 + g 70 -2.4 -5.01732 | gap 1, opp_overlap 1571738 CTTATAACGTGGTGG CACGGCAGTGA TAT TTAA-GCCGTG TTTTTTCAGCGCATT TERM 1858 1572631 - 1572641 + g 70 -4.6 -4.72486 | overlap 1572638 AAACATGCTGTATAC CGCT TCA GGCG TTTTTGCCATTTGTG TERM 1859 1573311 - 1573322 + g 74 -2.2 -5.08824 | gap 1 TCGATGCACGGGTCA GCAGG GCA CC-GC TTTTTTCCATGGCGA TERM 1860 1573747 - 1573726 - R 100 -15.9 -5.74086 | opp_overlap 1573721 1573720 AAAGTAAACAAAAAA GCGCCCTAC AACA GTAGGGCGC TTGAACTATTTTCTT Shewmr4_1356 1575878 - 1573788 - | hypothetical protein Shewmr4_1357 1576417 - 1576995 + | thymidine kinase TERM 1861 1578749 - 1578727 - g 78 -4.1 -5.14563 | gap 1 CCCTCTATGAAAAAA CCG-AGACGG CTAA CCGTGTGCGG GTACAAACCGATAGT TERM 1862 1579249 - 1579235 - g 74 -10 -3.6217 | opp_overlap 1579234 1579241, overlap 1579233 GCGTAATGATAAAGA TCCTCG CCG CGAGGA ATATCTGCGGGTGTT TERM 1863 1579699 - 1579685 - g 70 -2.7 -4.84017 | overlap 1579672 AACGCGGCATAAAAA CGCGC GTGAT GTGCG GGTACAGGTAATGCT Shewmr4_1358 1577283 - 1580354 + | hypothetical protein TERM 1864 1580477 - 1580450 - T 75 -5.5 -4.83243 | gap 1, opp_overlap 1580450 TCTATATAAAACAAA CCCCGC-AGCCG AGTTA CAGTTTGCGGGG TTTTTATTGGCACCG TERM 1865 1580450 - 1580477 + T 84 -6.2 -5.06414 | opp_overlap 1580450 TCTATATAAAACAAA CCCCGCAGCC GAGTTACA GTTTGCGGGG TTTTTATTGGCACCG Shewmr4_1359 1581878 - 1580499 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 1866 1581215 - 1581198 - G 77 -10.5 -3.5944 | ATCGACACCGGTAAA GGCGCCA GCTT CGGCGCC AAATAGCTCGCTCTC Shewmr4_1360 1583686 - 1581875 - | periplasmic sensor signal transduction histidine kinase TERM 1867 1583531 - 1583545 + g 81 -6.4 -4.99861 | overlap 1583517 ATCGAGGAAGCTGAC CAGCTC TTT GAGTTG TTTTTCTGATTGCTG TERM 1868 1583741 - 1583722 - R 100 -13.6 -4.88795 | opp_overlap 1583726 ACTGAATAAAACAAA GCGAGCCT GAGT AGGCTCGC TTAAAAACTATCTAG TERM 1869 1583783 - 1583759 - R 100 -13.1 -3.42726 | opp_overlap 1583758 1583757, overlap 1583763 AAAAACTATCTAGAA TCAAGGAATAA TCC TTATTCCTTGA GATTAATATCCGTTG Shewmr4_1361 1585183 - 1583786 - | TRAP dicarboxylate transporter, DctM subunit Shewmr4_1362 1585827 - 1585183 - | tripartite ATP-independent periplasmic transporter DctQ TERM 1870 1585882 - 1585850 - R 100 -12.8 -3.53012 | opp_overlap 1585852, overlap 1585852 CTCCCCTCGCTCAAA TACCGCTTAACCCC AAATA GAGGTTAAGCGGTT TATTTCATTATTGTT TERM 1871 1585880 - 1585852 - R 100 -15.4 -3.34398 | opp_overlap 1585852, overlap 1585850 CCCCTCGCTCAAATA CCGCTTAACCCC AAATA GAGGTTAAGCGG TTTATTTCATTATTG TERM 1872 1585852 - 1585880 + r 100 -13.2 -4.62392 | opp_overlap 1585852 1585850 CCCCTCGCTCAAATA CCGCTTAACCCC AAATA GAGGTTAAGCGG TTTATTTCATTATTG Shewmr4_1363 1586912 - 1585890 - | TRAP dicarboxylate transporter, DctP subunit Shewmr4_1364 1587537 - 1587307 - | hypothetical protein TERM 1873 1589294 - 1589314 + G 76 -5.3 -4.81863 | CTGCCGTGACTTGCC GGCGCGTGA CAC TGACGAGCC TTTTGTTGTGCGTTT TERM 1874 1589828 - 1589811 - g 70 -4.9 -4.74706 | opp_overlap 1589814, overlap 1589812 TTTAATACCGAAAAA CTGGTTT GGTT AAACCAA CACTATATTAAGACA Shewmr4_1365 1588908 - 1590317 + | glutamyl-tRNA synthetase TERM 1875 1591647 - 1591671 + T 74 -9.4 -3.30243 | opp_overlap 1591649, overlap 1591639 TCCCCTAGGGGATAC CACTCTATCT CTTAA AGATAGGGTG TTATCACAAATGACT TERM 1876 1592204 - 1592217 + T 100 -8.1 -5.76633 | opp_overlap 1592204 1592203 GTTGAGAACAATAAG CCACC GTTA GGTGG TTTTTTTGTATCTAA TERM 1877 1592571 - 1592555 - T 100 -9.4 -5.34381 | opp_overlap 1592554 1592555 AAAGCCAAATAAAAA GGCGAC TCGAG GTCGCC ATTTACATCCAAACT TERM 1878 1592555 - 1592571 + T 72 -10.1 -2.78798 | opp_overlap 1592555, overlap 1592554 AAAGCCAAATAAAAA GGCGACT CGA GGTCGCC ATTTACATCCAAACT Shewmr4_1366 1594469 - 1592640 - | ABC transporter related TERM 1879 1593467 - 1593486 + g 74 -7.9 -4.15565 | AAAGGGTATTCATCC CATCGGT CACTGT ACCGATG TTTTCAAATAATGAA TERM 1880 1594770 - 1594780 + G 79 -8.2 -4.31692 | GAAGCGCGCATGAGT CGCG ATC CGCG TTTTGATGGTAAGTT Shewmr4_1367 1594653 - 1596281 + | transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase Shewmr4_1368 1596415 - 1596981 + | methylated-DNA--protein-cysteine methyltransferase TERM 1881 1598234 - 1598216 - g 73 -5.2 -4.7373 | TTAGCGCAGGAAAAA CCTCAAGC CAA GCCCGAAG GCACCGGCAAGAAAA Shewmr4_1369 1597019 - 1598302 + | DEAD/DEAH box helicase domain-containing protein TERM 1882 1598527 - 1598549 + G 76 -7 -4.57837 | AGTTTTAAGCACCAT GGACTGCGTT ATG AATGCATTCC TTTTTCCCGCAATGT Shewmr4_1370 1598368 - 1598838 + | dual specificity protein phosphatase TERM 1883 1600348 - 1600338 - g 82 -6.8 -4.76644 | opp_overlap 1600338 AATATTGAGGAAAAA CTGG CGA CCAG TACTTATCGACTTGC Shewmr4_1371 1598874 - 1600496 + | phospholipase D/transphosphatidylase TERM 1884 1600854 - 1600869 + G 70 -3.2 -4.7497 | CATTACCGACTGCCA GCGGAT GATT ATCGGC TTTTTGGTGCGTGCA Shewmr4_1372 1600588 - 1601487 + | response regulator receiver modulated CheW protein Shewmr4_1373 1601658 - 1602884 + | serine/threonine transporter SstT TERM 1885 1602922 - 1602941 + F 100 -10 -5.61596 | opp_overlap 1602920 1602922 AAAAGTATCATAAGA GCAGTCAC CTCG GTGGCTGC TTTTTTTATGGGAGT Shewmr4_1374 1602961 - 1603485 + | hypothetical protein TERM 1886 1603508 - 1603487 - T 90 -11.7 -3.72893 | opp_overlap 1603487 TAGGTTGTTATTAAA GGGATAAAC CTAA GTTTATCCC TTTGAGTTAACCGCT TERM 1887 1603487 - 1603508 + T 95 -11.7 -3.75332 | opp_overlap 1603487 TAGGTTGTTATTAAA GGGATAAAC CTAA GTTTATCCC TTTGAGTTAACCGCT Shewmr4_1375 1604917 - 1603538 - | twin-arginine translocation pathway signal Shewmr4_1376 1605253 - 1605687 + | hypothetical protein TERM 1888 1605745 - 1605775 + T 100 -12.6 -4.59109 | opp_overlap 1605727 1605747 1605749, overlap 1605747 1605749 TAAGCCGATTGGCTA AATACGAGGTCGCT TAA GGCGACCTCGTGTC TTTTTAAGGCCTATC TERM 1889 1605773 - 1605747 - T 100 -12.3 -3.55563 | opp_overlap 1605747 1605745 1605749, overlap 1605727 1605749 AGCCGATTGGCTAAA TACGAGGTCGC TTAAG GCGACCTCGTG TCTTTTTAAGGCCTA TERM 1890 1605747 - 1605773 + T 100 -15.2 -3.90762 | opp_overlap 1605727 1605747 1605749, overlap 1605745 1605749 AGCCGATTGGCTAAA TACGAGGTCGCT TAA GGCGACCTCGTG TCTTTTTAAGGCCTA TERM 1891 1605771 - 1605749 - T 100 -14.9 -3.35597 | opp_overlap 1605749 1605747 1605745, overlap 1605747 CCGATTGGCTAAATA CGAGGTCGC TTAAG GCGACCTCG TGTCTTTTTAAGGCC TERM 1892 1605749 - 1605771 + T 100 -15.6 -3.53855 | opp_overlap 1605747 1605749, overlap 1605747 1605745 CCGATTGGCTAAATA CGAGGTCGCT TAA GGCGACCTCG TGTCTTTTTAAGGCC Shewmr4_1377 1606494 - 1605823 - | pseudouridylate synthase Shewmr4_1378 1607144 - 1606590 - | redoxin domain-containing protein Shewmr4_1379 1607875 - 1607249 - | hypothetical protein Shewmr4_1380 1608058 - 1608261 + | hypothetical protein TERM 1893 1608859 - 1608835 - g 100 -13.5 -4.48987 | overlap 1608837 CGTCTATAACCAAAA CCCTGGCGCGG TTG CCGCGCCAACG GCGGGATTACACTTT TERM 1894 1608857 - 1608837 - g 83 -14.7 -2.56864 | overlap 1608835 TCTATAACCAAAACC CTGGCGCGG TTG CCGCGCCAA CGGCGGGATTACACT Shewmr4_1381 1608326 - 1609363 + | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 1895 1609384 - 1609412 + F 86 -5.9 -5.40072 | opp_overlap 1609384 1609386 1609387, overlap 1609387 GATTTTGTTTTAAAA TAGCCGCCCACAT TGA GTTTGGGCGGTAA TTTTTTTCAGCCAAA TERM 1896 1609387 - 1609409 + F 78 -9.8 -3.49966 | opp_overlap 1609386 1609384 1609387, overlap 1609384 TTTGTTTTAAAATAG CCGCCCACAT TGA GTTTGGGCGG TAATTTTTTTCAGCC TERM 1897 1609484 - 1609473 - f 73 -5.8 -4.41494 | TATTGTTAATCAAAA TGGC GCGT GCCA TTACAAATGTAGTCA tgt 1609525 - 1610649 + | queuine tRNA-ribosyltransferase yajC 1610676 - 1611008 + | preprotein translocase subunit YajC TERM 1898 1611245 - 1611277 + G 74 -11.4 -3.14132 | opp_overlap 1611240 1611241 CTTGAAAAAGGCCAA TTGTTGGTTCGCGT ACAAA ACGCGGATCAACAG TTGCTGGCCAAGGAA secD 1611026 - 1612876 + | preprotein translocase subunit SecD TERM 1899 1613497 - 1613513 + G 72 -9.5 -3.37487 | opp_overlap 1613500, overlap 1613495 1613500 TGTGGGTTACTCACT CAACGAT ACC ATCGTTG TGTTTGACCGTATCC secF 1612889 - 1613836 + | preprotein translocase subunit SecF TERM 1900 1613856 - 1613870 + F 73 -10 -3.01712 | overlap 1613869 GCATTGAGACTCGAG GTCGTG TAT CACGAC TGTTGAAAAAAAAGC TERM 1901 1613869 - 1613915 + F 100 -15.4 -4.24002 | opp_overlap 1613884, overlap 1613856 1613870 1613884 AGGTCGTGTATCACG ACTGTTGAAAAAAAAGCCACCT TGA AGGTGGCTTTTTTTTCGGTGGA TTTTGACCTTTCCGA TERM 1902 1613870 - 1613914 + F 100 -18.9 -3.13919 | opp_overlap 1613884, overlap 1613869 1613884 GGTCGTGTATCACGA CTGTTGAAAAAAAAGCCACCT TGA AGGTGGCTTTTTTTTCGGTGG ATTTTGACCTTTCCG TERM 1903 1613900 - 1613884 - f 100 -12.3 -5.75945 | opp_overlap 1613884 1613870 1613869 ACTGTTGAAAAAAAA GCCACCT TGA AGGTGGC TTTTTTTTCGGTGGA TERM 1904 1613884 - 1613900 + F 100 -12.3 -5.81412 | opp_overlap 1613884, overlap 1613870 1613869 ACTGTTGAAAAAAAA GCCACCT TGA AGGTGGC TTTTTTTTCGGTGGA Shewmr4_1386 1614093 - 1614410 + | hypothetical protein Shewmr4_1387 1614698 - 1615057 + | rhodanese domain-containing protein Shewmr4_1388 1615093 - 1616004 + | siroheme synthase TERM 1905 1616031 - 1616061 + F 100 -16.3 -5.37345 | GCAGTTTGTTTGAGC TGACGGCGAGTCT TAGGT AGACTCGCCGTTA TTTTTTATCGTTAAG Shewmr4_1389 1616090 - 1616635 + | YaeQ family protein TERM 1906 1616667 - 1616633 - T 100 -13.9 -3.3062 | gap 1, opp_overlap 1616640, overlap 1616640 CTGAAAGATGACCAA TAAA-AAAGAGCCTGC AATT GCAGGCTCTTTGTTTA GACGAACATTATTGG TERM 1907 1616640 - 1616659 + T 100 -13.6 -4.41348 | opp_overlap 1616633 1616640 ATGACCAATAAAAAA GAGCCTGC AATT GCAGGCTC TTTGTTTAGACGAAC TERM 1908 1616659 - 1616640 - T 100 -13.6 -5.52023 | opp_overlap 1616640, overlap 1616633 ATGACCAATAAAAAA GAGCCTGC AATT GCAGGCTC TTTGTTTAGACGAAC Shewmr4_1390 1619093 - 1616676 - | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 1909 1618920 - 1618932 + g 70 -3.3 -4.81249 | TTCTGACATCAGGGC TGGCG CAT CGGCA TTTTTAAATTTAACG TERM 1910 1619535 - 1619548 + r 74 -6.7 -4.26953 | overlap 1619544 TTTGGTGTCGGCAGT TTGGC ATTT GCCAA TTTATTGGCTTAATT TERM 1911 1619654 - 1619629 - R 100 -12.7 -3.42301 | opp_overlap 1619635, overlap 1619635 AAAAAGAACAATATA CAAAAAGCGCC ATTT GGCGCTTTTTA GTCCGTCAGTAAAAG TERM 1912 1619648 - 1619635 - R 100 -9.5 -5.1383 | opp_overlap 1619635, overlap 1619629 AACAATATACAAAAA GCGCC ATTT GGCGC TTTTTAGTCCGTCAG TERM 1913 1619635 - 1619648 + r 100 -9.5 -4.7497 | opp_overlap 1619635 1619629 AACAATATACAAAAA GCGCC ATTT GGCGC TTTTTAGTCCGTCAG Shewmr4_1391 1620074 - 1619676 - | rhodanese domain-containing protein Shewmr4_1392 1620312 - 1620100 - | hypothetical protein Shewmr4_1393 1623602 - 1620354 - | acriflavin resistance protein TERM 1914 1621663 - 1621651 - G 71 -6.3 -4.42386 | CTGTGACGTAGAAAA TAGTG GCG CACTA AGCCGTTAAAGTTCA TERM 1915 1622505 - 1622481 - G 70 -4.3 -4.59773 | GCCCATGGTTAAAAA CACCAATAC GACAACG GCACTGGTG GCAAAAATCAGCTTA TERM 1916 1623025 - 1623001 - G 74 -11.5 -3.06492 | GGATCGATGCGAACA TTGGCCACCAT CTC ATGTTGGCCAA CGGTGTAAATCTCCC Shewmr4_1394 1624651 - 1623638 - | RND family efflux transporter MFP subunit TERM 1917 1623752 - 1623772 + g 93 -9 -5.0538 | opp_overlap 1623742 AGAGACGCGCACCTG GGTGAGCA CGAAT TGCTCGCC TTTTTTCAGGTAGAC Shewmr4_1395 1625548 - 1624832 - | hypothetical protein TERM 1918 1625458 - 1625472 + g 77 -9.2 -3.97947 | CTTTCATCTCTAGCA GCGCCG AGC TGGCGC TTTGTCCTACATAGA Shewmr4_1396 1626093 - 1625707 - | hypothetical protein TERM 1919 1626181 - 1626149 - R 95 -13 -3.19874 | gap 1, opp_overlap 1626158, overlap 1626151 1626158 AATAAATACGCAAGA TACAAAAAAGCCGCA AAAA TGCGGCTTTTTTG-A GTTCGACACAGCTTA TERM 1920 1626180 - 1626151 - R 100 -18.1 -3.14671 | opp_overlap 1626158, overlap 1626149 1626158 TAAATACGCAAGATA CAAAAAAGCCGCA AAAA TGCGGCTTTTTTG AGTTCGACACAGCTT TERM 1921 1626158 - 1626173 + r 100 -10.4 -5.15969 | opp_overlap 1626151 1626149 1626158 GCAAGATACAAAAAA GCCGCA AAAA TGCGGC TTTTTTGAGTTCGAC TERM 1922 1626173 - 1626158 - R 100 -10.4 -5.47431 | opp_overlap 1626158, overlap 1626151 1626149 GCAAGATACAAAAAA GCCGCA AAAA TGCGGC TTTTTTGAGTTCGAC Shewmr4_1397 1627489 - 1626194 - | membrane protein involved in aromatic hydrocarbon degradation TERM 1923 1627809 - 1627774 - R 100 -15 -4.07537 | opp_overlap 1627784, overlap 1627775 1627784 AATAAATTTAAACAA TTTGTAAAAAGCGTAC ACAT GTACGCTTTTTACAAT TAGGGACAGAAAATT TERM 1924 1627808 - 1627775 - R 100 -18.5 -3.02895 | opp_overlap 1627784, overlap 1627774 1627784 ATAAATTTAAACAAT TTGTAAAAAGCGTAC ACAT GTACGCTTTTTACAA TTAGGGACAGAAAAT TERM 1925 1627799 - 1627784 - R 100 -9 -4.64144 | opp_overlap 1627784, overlap 1627775 1627774 AACAATTTGTAAAAA GCGTAC ACAT GTACGC TTTTTACAATTAGGG TERM 1926 1627784 - 1627799 + r 100 -9 -4.66833 | opp_overlap 1627784 1627775 1627774 AACAATTTGTAAAAA GCGTAC ACAT GTACGC TTTTTACAATTAGGG Shewmr4_1398 1629281 - 1627830 - | sodium/proline symporter Shewmr4_1399 1630144 - 1629440 - | hypothetical protein TERM 1927 1629926 - 1629911 - G 73 -5.4 -4.72986 | gap 1, opp_overlap 1629909 1629911, overlap 1629913 CATGGCGACTAAAAA GC-CCGT TTG ACGGCGC TGTTTATGGTGCTGC Shewmr4_1400 1630700 - 1630137 - | RNA polymerase sigma factor Shewmr4_1401 1632439 - 1630781 - | hypothetical protein Shewmr4_1402 1634481 - 1632436 - | TPR repeat-containing protein Shewmr4_1403 1635497 - 1634481 - | von Willebrand factor, type A TERM 1928 1635253 - 1635284 + g 76 -11.6 -3.28791 | ATCAGATCCCGCCCT TGGCTTGGCAGTTC AATT GGATCGCCAAGCCA TTGTGGGCGGGCGAT Shewmr4_1404 1636084 - 1635491 - | hypothetical protein Shewmr4_1405 1637116 - 1636148 - | hypothetical protein TERM 1929 1637081 - 1637054 - G 70 -9.2 -3.53224 | opp_overlap 1637053, overlap 1637057 CAGCCCGTCGGCAAA TAATGGCAAGCC ATGT GGATTGCCATCA CTGTGTAGGGATGCG TERM 1930 1637078 - 1637057 - G 75 -8.7 -3.90744 | opp_overlap 1637053, overlap 1637054 CCCGTCGGCAAATAA TGGCAAGCC ATGT GGATTGCCA TCACTGTGTAGGGAT Shewmr4_1406 1638146 - 1637190 - | ATPase fadI 1638420 - 1639730 + | 3-ketoacyl-CoA thiolase TERM 1931 1641148 - 1641135 - g 71 -6.7 -4.13767 | opp_overlap 1641134 TTGCCCATGCGAAAA CGTCT CCTG AGACG ATTGCTACCACAGTG fadJ 1639736 - 1641865 + | multifunctional fatty acid oxidation complex subunit alpha TERM 1932 1641885 - 1641916 + F 77 -10.3 -3.12999 | opp_overlap 1641892, overlap 1641892 TAAATATATCGTGGT CAAAAAAGCGGCA ATTCGA TGCCGCTTTTTTA TTGCCTCTAGGCTAA TERM 1933 1641909 - 1641892 - f 100 -8.4 -5.00884 | opp_overlap 1641885 1641892 ATCGTGGTCAAAAAA GCGGCA ATTCGA TGCCGC TTTTTTATTGCCTCT TERM 1934 1641892 - 1641909 + F 100 -8.4 -5.49234 | opp_overlap 1641892, overlap 1641885 ATCGTGGTCAAAAAA GCGGCA ATTCGA TGCCGC TTTTTTATTGCCTCT Shewmr4_1409 1642077 - 1642337 + | hypothetical protein TERM 1935 1642404 - 1642360 - T 100 -19.8 -3.5393 | gap 1, opp_overlap 1642376, overlap 1642365 1642376 ATGATTTTTCTTAAA TATGACCAATAAAAAAGGAGC ATTA GCTCCTTTTTTATTGG-CATA GGCCGAGCGCTAGCA TERM 1936 1642400 - 1642365 - T 100 -20.8 -2.84325 | opp_overlap 1642376, overlap 1642360 1642376 TTTTCTTAAATATGA CCAATAAAAAAGGAGC ATTA GCTCCTTTTTTATTGG CATAGGCCGAGCGCT TERM 1937 1642376 - 1642389 + T 100 -8.1 -5.46657 | opp_overlap 1642376 1642365 1642360 ATGACCAATAAAAAA GGAGC ATTA GCTCC TTTTTTATTGGCATA TERM 1938 1642389 - 1642376 - T 100 -8.1 -5.52023 | opp_overlap 1642376, overlap 1642365 1642360 ATGACCAATAAAAAA GGAGC ATTA GCTCC TTTTTTATTGGCATA Shewmr4_1410 1643350 - 1642610 - | hypothetical protein Shewmr4_1411 1647706 - 1643414 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 1939 1645900 - 1645911 + g 74 -4.4 -4.88407 | TGAAAACTAGGAAGT CAGA TATT TCTG TTTTGTTGATTTCTT TERM 1940 1646678 - 1646696 + g 78 -2.5 -5.26316 | gap 1, opp_overlap 1646680, overlap 1646678 1646680 TTCAGATTCAGATGA TACA-AGG AAAC CCTGTGTA TTTTTTGTAAGATGC TERM 1941 1647843 - 1647853 + r 71 -4 -4.82901 | GAGGATTGACCGCGT TTTG CAT CAAA TTTTTATACAAAGAC Shewmr4_1412 1650747 - 1647958 - | Insulysin TERM 1942 1649361 - 1649382 + g 73 -8.7 -3.72405 | CAGGGCGAATTTGTG TCACTTGCC AACG GGCAAGGGA TTCTGGTTTTATCGG TERM 1943 1650558 - 1650547 - G 73 -5.8 -4.58395 | TTCAGTGCCTAAAAA GAGC ATAT GCTC TAAAAAATGTGCCAT Shewmr4_1413 1650917 - 1651387 + | phosphohistidine phosphatase, SixA TERM 1944 1651402 - 1651429 + T 100 -16.4 -5.02074 | opp_overlap 1651402 1651406, overlap 1651406 ATTCATTCGATAAAA CAAAGGGCTCAC ATTA GTGGGCCCTTTG TTTTTTAGAGGATAA TERM 1945 1651429 - 1651402 - T 100 -14.2 -4.40358 | opp_overlap 1651402 1651406, overlap 1651406 ATTCATTCGATAAAA CAAAGGGCTCAC ATTA GTGGGCCCTTTG TTTTTTAGAGGATAA TERM 1946 1651425 - 1651406 - T 100 -9.2 -4.77775 | opp_overlap 1651402 1651406, overlap 1651402 ATTCGATAAAACAAA GGGCTCAC ATTA GTGGGCCC TTTGTTTTTTAGAGG TERM 1947 1651406 - 1651425 + T 100 -11.4 -5.04249 | opp_overlap 1651406 1651402, overlap 1651402 ATTCGATAAAACAAA GGGCTCAC ATTA GTGGGCCC TTTGTTTTTTAGAGG Shewmr4_1414 1651984 - 1651454 - | hypothetical protein Shewmr4_1415 1652065 - 1653009 + | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase TERM 1948 1653037 - 1653078 + F 86 -11.7 -3.30159 | gap 1, opp_overlap 1653031, overlap 1653038 CATAAATTAGGTTGA GTC-TTTTCCCGCTGCCAGT TAG GCTTGCAGCGGGAAAAAGAA TTGTCCAGCCATTGC TERM 1949 1653038 - 1653077 + F 100 -15.2 -2.57881 | gap 1, opp_overlap 1653031, overlap 1653037 ATAAATTAGGTTGAG TC-TTTTCCCGCTGCCAGT TAG GCTTGCAGCGGGAAAAAGA ATTGTCCAGCCATTG TERM 1950 1654101 - 1654089 - g 73 -9.1 -3.737 | opp_overlap 1654071 GAAGTGGTGACTAAA GGTCG TCA CGACC CCTGTGTCGGGATCC Shewmr4_1416 1653138 - 1654232 + | chorismate synthase TERM 1951 1654315 - 1654351 + G 85 -7.3 -4.86954 | gap 1, opp_overlap 1654312 1654324, overlap 1654317 1654318 TAATGCCAACAATCT CTAGCACA-AGCCAGC AGTTAC GCTGGCTATGTGCCTG TTATTTTTTCTTCTT TERM 1952 1654317 - 1654349 + G 74 -8.5 -4.00001 | gap 1, opp_overlap 1654312 1654324, overlap 1654315 1654318 ATGCCAACAATCTCT AGCACA-AGCCAGC AGTTAC GCTGGCTATGTGCC TGTTATTTTTTCTTC TERM 1953 1654318 - 1654348 + G 76 -12 -2.9756 | gap 1, opp_overlap 1654312 1654324, overlap 1654317 1654315 TGCCAACAATCTCTA GCACA-AGCCAGC AGTTAC GCTGGCTATGTGC CTGTTATTTTTTCTT Shewmr4_1417 1654302 - 1655471 + | major facilitator transporter Shewmr4_1418 1655537 - 1656679 + | ATP-NAD/AcoX kinase Shewmr4_1419 1656735 - 1657016 + | hypothetical protein Shewmr4_1420 1657020 - 1657628 + | tRNA/rRNA methyltransferase (SpoU) TERM 1954 1657697 - 1657664 - T 100 -13.5 -3.38046 | gap 1, opp_overlap 1657664 1657670, overlap 1657670 TGCTCAGTCGAAATA CA-AAAAGGATTAAGC ACT GCTTAATCCTTTTCTG TTTTGAGCAGCCAAT TERM 1955 1657664 - 1657697 + T 100 -13.5 -4.07687 | gap 1, opp_overlap 1657664 1657670, overlap 1657670 TGCTCAGTCGAAATA CA-AAAAGGATTAAGC ACT GCTTAATCCTTTTCTG TTTTGAGCAGCCAAT TERM 1956 1657690 - 1657670 - T 100 -12.7 -5.19879 | opp_overlap 1657664 1657670, overlap 1657664 GTCGAAATACAAAAA GGATTAAGC ACT GCTTAATCC TTTTCTGTTTTGAGC TERM 1957 1657670 - 1657690 + T 100 -12.7 -4.89567 | opp_overlap 1657670 1657664, overlap 1657664 GTCGAAATACAAAAA GGATTAAGC ACT GCTTAATCC TTTTCTGTTTTGAGC Shewmr4_1421 1659767 - 1657839 - | FAD dependent oxidoreductase Shewmr4_1422 1660053 - 1661288 + | 3-oxoacyl-[acyl-carrier-protein] synthase I TERM 1958 1661303 - 1661332 + F 100 -15.3 -3.07994 | opp_overlap 1661310, overlap 1661310 AGCCATTATTTTCGT TAAAAAAGGAAGC CTAG GCTTCCTTTTTTA TTGGCTGAAATTCAG TERM 1959 1661325 - 1661310 - f 100 -9 -5.00884 | opp_overlap 1661303 1661310 ATTTTCGTTAAAAAA GGAAGC CTAG GCTTCC TTTTTTATTGGCTGA TERM 1960 1661310 - 1661325 + F 100 -9 -5.4833 | opp_overlap 1661310, overlap 1661303 ATTTTCGTTAAAAAA GGAAGC CTAG GCTTCC TTTTTTATTGGCTGA Shewmr4_1423 1661702 - 1662832 + | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region TERM 1961 1663510 - 1663478 - g 76 -6.3 -4.61162 | opp_overlap 1663484, overlap 1663479 1663484 1663506 ACACCAAAGAAGAAA TGAAAATGGTCTGGG AAA CCCAGAAGATTTTCG GTGATGACGAAATCC TERM 1962 1663509 - 1663479 - g 72 -9.8 -3.35071 | opp_overlap 1663484, overlap 1663478 1663484 1663506 CACCAAAGAAGAAAT GAAAATGGTCTGGG AAA CCCAGAAGATTTTC GGTGATGACGAAATC Shewmr4_1424 1662835 - 1663851 + | aspartate semialdehyde dehydrogenase TERM 1963 1663900 - 1663884 - f 100 -12.3 -4.86621 | opp_overlap 1663884 ATGCCCAATGAAAAA GCCTGCT GCC AGCAGGC TTTTTTTGTTTTACA TERM 1964 1663884 - 1663900 + F 100 -12.3 -6.09196 | opp_overlap 1663884 ATGCCCAATGAAAAA GCCTGCT GCC AGCAGGC TTTTTTTGTTTTACA TERM 1965 1664547 - 1664523 - g 74 -10 -3.63627 | GTCGCACAGCCTAAA CCTAAGGTGG AGACG CCACCTAAGG CCGAGGTGAAGCCCG Shewmr4_1425 1664031 - 1667420 + | hypothetical protein TERM 1966 1667464 - 1667448 - f 81 -10.8 -3.27022 | opp_overlap 1667448 TTGATTTCACACTAA CGGCGC GCAGA GCGCCG TTTTTTTTATGGGCT TERM 1967 1667448 - 1667464 + F 100 -10.8 -5.94713 | opp_overlap 1667448 TTGATTTCACACTAA CGGCGC GCAGA GCGCCG TTTTTTTTATGGGCT Shewmr4_1426 1667524 - 1668309 + | tRNA pseudouridine synthase A Shewmr4_1427 1668361 - 1669659 + | FolC bifunctional protein TERM 1968 1669698 - 1669712 + G 85 -7.8 -4.83615 | GCACTGTGGTGCTGG TCGCCC TCG GGGTGA TTTTTCTGCCGGATA TERM 1969 1669815 - 1669774 - g 71 -11.5 -2.73338 | opp_overlap 1669774 1669777, overlap 1669773 ACAATTTGCCGAAAT TCCCCTGCGTCCTGCCGCG ATAG CGCAGCAAAACGCCGATGA TATGTTTGAGGTGTT Shewmr4_1428 1669652 - 1670476 + | sporulation domain-containing protein TERM 1970 1670765 - 1670788 + G 71 -5.4 -4.5448 | gap 1, overlap 1670768 TGAACGATGAGGTGC TACGCAATGGG GTC TCCATTGC-TA TTCTTTTTATCACTA TERM 1971 1670768 - 1670786 + G 78 -9.6 -3.86816 | overlap 1670765 ACGATGAGGTGCTAC GCAATGGG GTC TCCATTGC TATTCTTTTTATCAC TERM 1972 1670907 - 1670937 + G 100 -12.6 -5.28778 | overlap 1670909 1670912 GTGTTTCGGTGCCAT TAGGGGCGCACTGA TCG TCAGTGCGCTGCTG TTTTTTATGGATGCT TERM 1973 1670909 - 1670935 + G 100 -13 -4.2748 | overlap 1670907 1670912 GTTTCGGTGCCATTA GGGGCGCACTGA TCG TCAGTGCGCTGC TGTTTTTTATGGATG TERM 1974 1670912 - 1670932 + G 93 -15.5 -3.12257 | overlap 1670909 1670907 TCGGTGCCATTAGGG GCGCACTGA TCG TCAGTGCGC TGCTGTTTTTTATGG Shewmr4_1429 1670587 - 1671075 + | colicin V production protein TERM 1975 1672128 - 1672118 - g 73 -5.4 -4.71318 | opp_overlap 1672118 AAGATCAAAAAAGAA TGGT ACG ACCA TGATATCGACGTGGT Shewmr4_1430 1671257 - 1672771 + | amidophosphoribosyltransferase TERM 1976 1672862 - 1672843 - T 100 -12.2 -5.29846 | opp_overlap 1672843 AACGCCAAATAAAAA GCCAGTGA TGAG TCACTGGC TTTTTTGTTTTGATA TERM 1977 1672843 - 1672862 + T 100 -12.2 -5.83211 | opp_overlap 1672843 AACGCCAAATAAAAA GCCAGTGA TGAG TCACTGGC TTTTTTGTTTTGATA Shewmr4_1431 1674373 - 1672886 - | amino acid carrier protein TERM 1978 1672929 - 1672943 + g 70 -4.2 -4.62069 | TGATTGAGAGCCGTT TGCTCA TCC TGCGCA TTTTTACGCTCAACC Shewmr4_1432 1675023 - 1674736 - | hypothetical protein TERM 1979 1675471 - 1675455 - g 76 -11.5 -3.28497 | overlap 1675437 GCAGCTTAAACCTAA GGCCGCG ACC CGCAGCC AACTCACAGTACTTA Shewmr4_1433 1675222 - 1677342 + | DNA topoisomerase III TERM 1980 1677517 - 1677539 + T 100 -15 -5.40072 | TGACTATGTTTGTCA TGCACTCAAC CCC GTTGAGTGCA TTTTTTTAGGCAAAA TERM 1981 1677583 - 1677561 - T 100 -7 -6.38039 | opp_overlap 1677563 TAGGCAAAAAAAAAA GAGTAAGCCA ATA CGGATTACTC TTACGGAAATTGGTC Shewmr4_1434 1678976 - 1677687 - | prolyl aminopeptidase 2 Shewmr4_1435 1679156 - 1679800 + | beta-lactamase domain-containing protein TERM 1982 1680997 - 1681008 + G 70 -3 -4.76087 | GGTGAAATCGTCAAT CAAA TCAA TTTG TTTATTTCTTCTCTC Shewmr4_1436 1680133 - 1681872 + | methyl-accepting chemotaxis sensory transducer Shewmr4_1437 1682105 - 1683118 + | hypothetical protein Shewmr4_1438 1683118 - 1683804 + | hypothetical protein Shewmr4_1439 1683808 - 1684305 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein Shewmr4_1440 1684307 - 1686553 + | twin-arginine translocation pathway signal TERM 1983 1686578 - 1686607 + F 91 -7.3 -5.40072 | gap 1, opp_overlap 1686585, overlap 1686578 1686585 CGACACCTGAGTGAG C-AAAAAAGCGCCT AAT AAGCGCTTTTTTCG TTTTTTTACCACAAA TERM 1984 1686578 - 1686606 + F 70 -7.5 -3.83561 | opp_overlap 1686585, overlap 1686578 1686585 CGACACCTGAGTGAG CAAAAAAGCGCCT AAT AAGCGCTTTTTTC GTTTTTTTACCACAA TERM 1985 1686599 - 1686585 - f 95 -7.8 -5.1675 | opp_overlap 1686585 1686578 1686578 TGAGTGAGCAAAAAA GCGCCT AAT AAGCGC TTTTTTCGTTTTTTT TERM 1986 1686585 - 1686599 + F 95 -5.6 -5.62552 | opp_overlap 1686585, overlap 1686578 1686578 TGAGTGAGCAAAAAA GCGCCT AAT AAGCGC TTTTTTCGTTTTTTT TERM 1987 1686640 - 1686627 - f 73 -5.3 -4.59342 | opp_overlap 1686627 TTTACCACAAATAAA TTGCT TGTT AGCAA ATTTACGGGCATTAA TERM 1988 1687046 - 1687060 + G 71 -7.8 -4.08945 | overlap 1687047 TAGCACCTTCTTTGC TCAGCC GAA GGCTGG TTTTCAAGGCGTGAT Shewmr4_1441 1686924 - 1687415 + | hypothetical protein TERM 1989 1688228 - 1688244 + G 82 -7.3 -4.65838 | opp_overlap 1688228 GCAGTGGCGAGTTAA TTGGTGC CCA GCATCAA TTTTTAGACTCTGTG Shewmr4_1442 1687531 - 1688985 + | methyl-accepting chemotaxis sensory transducer TERM 1990 1689087 - 1689111 + T 100 -17.3 -4.20136 | opp_overlap 1689087 CGTATCATCTGAAAA TGGCGGAAATC GTA GATTTCCGCCA TTTCATTTTCGAAAT TERM 1991 1689111 - 1689087 - T 100 -17.3 -4.15565 | opp_overlap 1689087 CGTATCATCTGAAAA TGGCGGAAATC GTA GATTTCCGCCA TTTCATTTTCGAAAT Shewmr4_1443 1689749 - 1689444 - | hypothetical protein TERM 1992 1689517 - 1689505 - G 75 -10.5 -3.39844 | overlap 1689503 GTCAGATGTGAAAGA GCGGC TAT GCCGC CAACGATCACTGTTG Shewmr4_1444 1689953 - 1691176 + | transposase, IS204/IS1001/IS1096/IS1165 family protein TERM 1993 1691334 - 1691345 + F 81 -7.2 -4.59773 | opp_overlap 1691334 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGAG TERM 1994 1691345 - 1691334 - f 73 -7.2 -4.09511 | opp_overlap 1691334 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGAG Shewmr4_1445 1691502 - 1692464 + | hypothetical protein TERM 1995 1692639 - 1692674 + G 80 -10.6 -3.69621 | opp_overlap 1692636 1692665, overlap 1692632 1692640 TCTCTTGATGAATGG CTTTCGTTCATTTCAG TACC CAGAAATGAACGAAAC TTTCAAATTCTAGAT TERM 1996 1692640 - 1692673 + G 82 -14.1 -2.81291 | opp_overlap 1692636 1692665, overlap 1692632 1692639 CTCTTGATGAATGGC TTTCGTTCATTTCAG TACC CAGAAATGAACGAAA CTTTCAAATTCTAGA TERM 1997 1693555 - 1693530 - g 79 -8.4 -4.35091 | gap 1, overlap 1693545 1693546 AATAGCCATAACAAA CATTGCAGCGG ACAAG CCGCTG-AATG CAGCGTTAACCCATA Shewmr4_1446 1692585 - 1693571 + | restriction endonuclease TERM 1998 1694032 - 1694003 - T 100 -12.3 -3.57792 | opp_overlap 1694009, overlap 1694009 GTACTCACTTTTAAA CAAAAACATCGGC CTAG GCCGATGTTTTTT ATATCGATTAAAGTA TERM 1999 1694026 - 1694009 - T 100 -11.3 -5.27938 | opp_overlap 1694009, overlap 1694003 ACTTTTAAACAAAAA CATCGGC CTAG GCCGATG TTTTTTATATCGATT TERM 2000 1694009 - 1694026 + T 100 -11.3 -5.38951 | opp_overlap 1694003 1694009 ACTTTTAAACAAAAA CATCGGC CTAG GCCGATG TTTTTTATATCGATT Shewmr4_1447 1694874 - 1694062 - | exonuclease III Shewmr4_1448 1695173 - 1694874 - | YciI-like protein Shewmr4_1449 1695718 - 1695173 - | intracellular septation protein A Shewmr4_1450 1696917 - 1695880 - | ferric iron reductase TERM 2001 1696946 - 1696971 + r 100 -13.3 -3.95584 | opp_overlap 1696947, overlap 1696947 1696967 1696968 GCTTGAATTGATTAA ACTGCGGTGAG TCTA CTCACCGCAGC TTTCATTGATGAACA TERM 2002 1696970 - 1696947 - R 100 -16.8 -3.794 | opp_overlap 1696946 1696947 1696967 1696968 CTTGAATTGATTAAA CTGCGGTGAG TCTA CTCACCGCAG CTTTCATTGATGAAC TERM 2003 1696947 - 1696970 + r 100 -16.8 -2.97029 | opp_overlap 1696947, overlap 1696946 1696967 1696968 CTTGAATTGATTAAA CTGCGGTGAG TCTA CTCACCGCAG CTTTCATTGATGAAC Shewmr4_1451 1699219 - 1697006 - | TonB-dependent siderophore receptor Shewmr4_1452 1701194 - 1699305 - | IucA/IucC family protein TERM 2004 1699704 - 1699722 + g 77 -12.4 -3.05463 | overlap 1699679 1699688 GCGCTGCACTTCTTG CGGCAGTG GTT CGCTGCCG TTGAGTACAGCGACT TERM 2005 1699987 - 1700038 + g 70 -2.9 -4.77165 | gap 2, overlap 1700014 ATGGTCATCAGGGTT TGCTG-CGGCTCAAT-GTGCGGCAG CGGA CTCTCGCGCCACAGCGCCGACAGCA TTTTCTTATAGGCGC TERM 2006 1700353 - 1700365 + g 70 -9.1 -3.53012 | opp_overlap 1700351 1700349 CCGAGATAAATGATG TCGCC GCG GGCGA TTTCGCCGGCAAAGG Shewmr4_1453 1701874 - 1701191 - | siderophore biosynthesis protein, putative Shewmr4_1454 1703364 - 1701874 - | L-lysine 6-monooxygenase (NADPH) TERM 2007 1702558 - 1702575 + g 76 -5.5 -4.82901 | GAGAGATTTTTGATT CGCAATC AGGC GACTGCG TTTTTCTGGCGACAG TERM 2008 1702869 - 1702889 + g 71 -11.1 -2.71791 | opp_overlap 1702864, overlap 1702868 CTGGCACATAGGGCG TGGTGCCCG TGC CGAGCACCA GTTTGCGGCACAAAT TERM 2009 1703900 - 1703917 + r 71 -8.5 -3.53091 | opp_overlap 1703895 1703900 AGGGAAGGCATAAAA GCCATTT GGGA AAATGGC TTTAAACGCGAAGAT TERM 2010 1703917 - 1703900 - R 87 -8.5 -4.47551 | opp_overlap 1703900, overlap 1703895 AGGGAAGGCATAAAA GCCATTT GGGA AAATGGC TTTAAACGCGAAGAT Shewmr4_1455 1704221 - 1703937 - | hypothetical protein Shewmr4_1456 1704917 - 1704474 - | hypothetical protein TERM 2011 1704942 - 1704925 - R 71 -4.1 -4.81212 | gap 1, opp_overlap 1704926 1704927, overlap 1704926 1704927 TTTACCATAACAAAA CTGCCGAT GTT ACCGGC-G TTATATTAACATCTC TERM 2012 1705095 - 1705074 - R 100 -13.1 -5.36965 | TAATACCATAAAAAA GGCCAAATC CGCA GATTTGGCC CTGAATGATTGTATC trpA 1705962 - 1705126 - | tryptophan synthase subunit alpha Shewmr4_1458 1707158 - 1705968 - | tryptophan synthase subunit beta TERM 2013 1707233 - 1707249 + r 80 -6.5 -4.84359 | TTCAATTCTTGCTAG CCTGTAC TTT GCACAGG TTTTTATAAAAGTGG Shewmr4_1459 1708754 - 1707267 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase Shewmr4_1460 1709797 - 1708754 - | anthranilate phosphoribosyltransferase Shewmr4_1461 1710405 - 1709797 - | anthranilate synthase component II Shewmr4_1462 1712125 - 1710416 - | anthranilate synthase component I TERM 2014 1710504 - 1710519 + g 70 -8.2 -3.76492 | overlap 1710505 GCAGAAATCACCGCC TGCGCC TTTT GGCGCG TTTCATCGGCTTCAC TERM 2015 1712174 - 1712213 + H 100 -21 -3.80094 | opp_overlap 1712185, overlap 1712175 1712185 CAGACATTTTTCGCA CCAACAAAAAAGCCCGCA TTTC TGCGGGCTTTTTTGTTGA TTCTGTTACTTTCAA TERM 2016 1712175 - 1712212 + H 100 -24.5 -2.87334 | opp_overlap 1712185, overlap 1712174 1712185 AGACATTTTTCGCAC CAACAAAAAAGCCCGCA TTTC TGCGGGCTTTTTTGTTG ATTCTGTTACTTTCA TERM 2017 1712185 - 1712202 + H 100 -12.7 -5.57396 | opp_overlap 1712185, overlap 1712175 1712174 CGCACCAACAAAAAA GCCCGCA TTTC TGCGGGC TTTTTTGTTGATTCT TERM 2018 1712202 - 1712185 - H 100 -12.7 -5.5112 | opp_overlap 1712185 1712175 1712174 CGCACCAACAAAAAA GCCCGCA TTTC TGCGGGC TTTTTTGTTGATTCT TERM 2019 1712673 - 1712648 - g 71 -10.4 -3.17723 | opp_overlap 1712630 GCAGGCTTAAGTGAA GCCCGCGCCT TTAATC AAGCGCAGGC CGAACCGTTAAAACT Shewmr4_1463 1712495 - 1713355 + | phosphotransferase domain-containing protein TERM 2020 1713715 - 1713699 - g 76 -2.9 -5.09245 | GCAAAACGACAAAAA GAAAACC ATT GGTATCC GCGTGCCAGACAATG Shewmr4_1464 1713352 - 1713972 + | translation factor SUA5 Shewmr4_1465 1714163 - 1714951 + | condensin subunit ScpA Shewmr4_1466 1714955 - 1715551 + | condensin subunit ScpB Shewmr4_1467 1715544 - 1716419 + | ribosomal large subunit pseudouridine synthase B TERM 2021 1716455 - 1716468 + T 100 -9.5 -5.42514 | opp_overlap 1716455 GTCTCTCAGTAAAAA GGCCG CTTG CGGCC TTTTTTGCTTTCTGC TERM 2022 1716468 - 1716455 - T 100 -9.5 -4.72272 | opp_overlap 1716455 GTCTCTCAGTAAAAA GGCCG CTTG CGGCC TTTTTTGCTTTCTGC TERM 2023 1716487 - 1716530 + T 100 -16.5 -3.21912 | gap 1, opp_overlap 1716496 1716500, overlap 1716496 TTTGCTTTCTGCGAC T-GATAAAAATAAAGGGAGC GTAGG GCTCCCTTTATTTTTATCTA TTAGTACATTAGAGC TERM 2024 1716496 - 1716520 + T 100 -13 -5.10968 | opp_overlap 1716496 1716500, overlap 1716487 TGCGACTGATAAAAA TAAAGGGAGC GTAGG GCTCCCTTTA TTTTTATCTATTAGT TERM 2025 1716520 - 1716496 - T 100 -13 -4.87665 | opp_overlap 1716496 1716487, overlap 1716500 TGCGACTGATAAAAA TAAAGGGAGC GTAGG GCTCCCTTTA TTTTTATCTATTAGT TERM 2026 1716516 - 1716500 - T 100 -9.4 -4.97405 | opp_overlap 1716496 1716487, overlap 1716496 ACTGATAAAAATAAA GGGAGC GTAGG GCTCCC TTTATTTTTATCTAT Shewmr4_1468 1717291 - 1716554 - | short chain dehydrogenase TERM 2027 1717187 - 1717171 - G 74 -6.5 -4.2828 | opp_overlap 1717154 1717172, overlap 1717172 TTTTACCGAGTAAAA TCACGGT GGC ACCGTGT TTGGCAAATTCAATG TERM 2028 1717172 - 1717186 + g 74 -10 -3.5774 | opp_overlap 1717172 1717171, overlap 1717154 TTTACCGAGTAAAAT CACGGT GGC ACCGTG TTTGGCAAATTCAAT TERM 2029 1719695 - 1719677 - g 71 -6.7 -4.14739 | gap 1, overlap 1719681 GCAGGTATGTTAAAA GCAACGGG ATTA CCCGT-GC ACTTAATCGAAATCG Shewmr4_1469 1717553 - 1720036 + | hypothetical protein TERM 2030 1720073 - 1720058 - f 100 -10.4 -4.7416 | opp_overlap 1720058 GTAAAATCCTAAAAA CCCAGC CTTT GCTGGG TTTTTTTATGGCGCT TERM 2031 1720058 - 1720073 + F 100 -10.4 -5.61596 | opp_overlap 1720058 GTAAAATCCTAAAAA CCCAGC CTTT GCTGGG TTTTTTTATGGCGCT TERM 2032 1720380 - 1720368 - g 70 -3.3 -4.75404 | AAAGCCTACGAAAAA CAGCT GAA AGCGG ACGAAAAGGCGAAGG Shewmr4_1470 1720149 - 1721165 + | putative periplasmic protease TERM 2033 1721190 - 1721221 + F 100 -12.4 -4.36914 | opp_overlap 1721196, overlap 1721196 TTAACTCACTCCTGA TGAAAACGCCTGCG AATA TGCAGGCGTTTTTG TTTTGTCCGAGCGCG TERM 2034 1721215 - 1721196 - f 100 -10.7 -4.2558 | opp_overlap 1721196 1721190 CACTCCTGATGAAAA CGCCTGC GAATAT GCAGGCG TTTTTGTTTTGTCCG TERM 2035 1721196 - 1721215 + F 100 -11.4 -5.54907 | opp_overlap 1721196, overlap 1721190 CACTCCTGATGAAAA CGCCTGCG AATA TGCAGGCG TTTTTGTTTTGTCCG Shewmr4_1471 1721359 - 1722378 + | AraC family transcriptional regulator TERM 2036 1722413 - 1722393 - T 78 -9.1 -3.77489 | opp_overlap 1722393 AAGGGAAGAGTGAAA GCGCTAATT AAC AATTAACGC TTTGGTCTGTCGTCA Shewmr4_1472 1723127 - 1722426 - | hypothetical protein TERM 2037 1722601 - 1722616 + g 78 -4 -5.08824 | opp_overlap 1722595 TGATACAAGGGACTT TGACCT AAAT AGGTTA TTTTTTGACTGACAC Shewmr4_1473 1724483 - 1723299 - | hypothetical protein TERM 2038 1723590 - 1723555 - G 70 -2.5 -4.96848 | gap 1, opp_overlap 1723559 TGGTCGATATAAAAA CCAAGGCGTAAGCCGG AGATG CTGGCATA-GCCTTTG GCGCTGTGGCAATGG TERM 2039 1724539 - 1724520 - R 81 -9.3 -3.90744 | opp_overlap 1724520 1724523 1724526, overlap 1724523 TGTTGCTTGAAATAA GAAGGCC TAAGTC GGCCTTC TCTGTCAGGGGGTCG TERM 2040 1724520 - 1724539 + r 70 -9.3 -2.87564 | opp_overlap 1724520 1724523, overlap 1724523 1724526 TGTTGCTTGAAATAA GAAGGCC TAAGTC GGCCTTC TCTGTCAGGGGGTCG TERM 2041 1724579 - 1724606 + r 73 -8.4 -3.68222 | opp_overlap 1724579 1724578 GGAGTGGTAAGCAAG TGGGTGATTGCA AGCC TGCTTTCACCCA TTGTTACCGTTAACG Shewmr4_1474 1727357 - 1724622 - | hypothetical protein TERM 2042 1725591 - 1725603 + g 73 -5.5 -4.62783 | ACCGCCCGAATTAGG CCCTG CCG TAGGG TTTTTGGCATCGCTG TERM 2043 1727542 - 1727555 + H 80 -4.5 -5.09762 | opp_overlap 1727542 TTGGGGGGGACTGAA TACCC TTAC GGGTG TTTTTATCTTCAGAT TERM 2044 1728258 - 1728268 + G 74 -6.8 -4.41047 | overlap 1728256 CTGATTTGCCATTGC CAGC TTG GCTG TTTTCCTTGAGCCGT TERM 2045 1728910 - 1728920 + G 70 -3.2 -4.79657 | GAGCTTAATATTGAG TGCC AGT GGTA TTTTGTTGCTGTTAT TERM 2046 1728983 - 1729007 + G 78 -2.1 -5.24416 | opp_overlap 1728988, overlap 1728988 GCCTTCGTACTCACC CAAAAGCTATT ATT AGTAGCCATTG TTTTTATTGTGCTTA Shewmr4_1475 1727795 - 1730347 + | hypothetical protein TERM 2047 1730505 - 1730517 + G 83 -3.3 -5.47218 | opp_overlap 1730505 1730506, overlap 1730506 TCATACCACACCAAA CCACC GCT GGTGA TTTTTTTGAGTGGCG Shewmr4_1476 1730355 - 1731086 + | virulence factor family protein TERM 2048 1731131 - 1731166 + T 100 -17.8 -2.64099 | opp_overlap 1731137 1731141, overlap 1731137 1731141 GCCTAATGCTTTGGA ATAAAACAAAGGGCGC AGAT GCGCCCTTTGTTTTAG GTTGTACTACAGCGA TERM 2049 1731160 - 1731137 - T 100 -16.8 -4.63218 | opp_overlap 1731137 1731131 1731141, overlap 1731141 TGCTTTGGAATAAAA CAAAGGGCGC AGAT GCGCCCTTTG TTTTAGGTTGTACTA TERM 2050 1731137 - 1731160 + T 100 -16.8 -4.33151 | opp_overlap 1731137 1731141, overlap 1731131 1731141 TGCTTTGGAATAAAA CAAAGGGCGC AGAT GCGCCCTTTG TTTTAGGTTGTACTA TERM 2051 1731141 - 1731156 + T 100 -11.8 -4.73092 | opp_overlap 1731137 1731141, overlap 1731137 1731131 TTGGAATAAAACAAA GGGCGC AGAT GCGCCC TTTGTTTTAGGTTGT TERM 2052 1731156 - 1731141 - T 100 -11.8 -4.87892 | opp_overlap 1731141 1731137 1731131, overlap 1731137 TTGGAATAAAACAAA GGGCGC AGAT GCGCCC TTTGTTTTAGGTTGT Shewmr4_1477 1732253 - 1731186 - | hypothetical protein TERM 2053 1731312 - 1731301 - G 76 -7.2 -4.42653 | ACGTTATTCATAAAA CGGC CATA GCCG GAGTCATCACAGTCC Shewmr4_1478 1732997 - 1732398 - | arylesterase TERM 2054 1732640 - 1732650 + g 73 -5.4 -4.66609 | CGGTCAGTAGCACTT TAGC ACC GCTA TTTTTCGCTAGGGTA TERM 2055 1733503 - 1733535 + G 76 -8.4 -4.128 | gap 1, opp_overlap 1733493 AAACAGCTATCCGGC GGCGAGCAGCAAAGG GTGG CCATTGCT-CGCGCC TTTATCTGTGAACCT Shewmr4_1479 1733050 - 1733799 + | ABC transporter related TERM 2056 1734310 - 1734320 + G 79 -8.2 -4.30978 | overlap 1734303 GAAATCAGCCGCTTA CCCG ATG CGGG TTTTAATCCATTCGC TERM 2057 1734452 - 1734440 - g 71 -6.9 -4.15044 | opp_overlap 1734440 1734439 TTGTGGGTGAAGAAA GCGCC TTC AGCGC CTTTGAAAATAGCGT TERM 2058 1735064 - 1735084 + G 76 -8.3 -4.26189 | TCGCGGCTGTGCTGC TACTGGGCG TAT TGCTCAGTA TTTTAGGCTTTGTGA Shewmr4_1480 1733803 - 1736304 + | hypothetical protein TERM 2059 1736377 - 1736396 + F 100 -9.3 -5.14965 | opp_overlap 1736377 TTTGTAAAATAAAAA GCACTGG CCTAAA CCAGTGC TTTTTTAATGGCGAT TERM 2060 1736396 - 1736377 - f 100 -10 -5.45802 | opp_overlap 1736377 TTTGTAAAATAAAAA GCACTGGC CTAA ACCAGTGC TTTTTTAATGGCGAT Shewmr4_1481 1736645 - 1737307 + | signal peptidase I TERM 2061 1737370 - 1737339 - T 83 -11.7 -2.94218 | opp_overlap 1737339 1737345, overlap 1737345 ACTCTTCACGAGATA TAAAAATGGCGCC CTTATC GGCGCCATTTTTG TTTGATGATAAAGCG TERM 2062 1737339 - 1737370 + T 100 -13.9 -3.78775 | opp_overlap 1737339 1737345, overlap 1737345 ACTCTTCACGAGATA TAAAAATGGCGCC CTTATC GGCGCCATTTTTG TTTGATGATAAAGCG TERM 2063 1737345 - 1737364 + T 100 -10.7 -5.34309 | opp_overlap 1737339 1737345, overlap 1737339 CACGAGATATAAAAA TGGCGCC CTTATC GGCGCCA TTTTTGTTTGATGAT TERM 2064 1737364 - 1737345 - T 100 -10.7 -5.05601 | opp_overlap 1737345 1737339, overlap 1737339 CACGAGATATAAAAA TGGCGCC CTTATC GGCGCCA TTTTTGTTTGATGAT Shewmr4_1482 1738617 - 1737394 - | sodium/glutamate symporter TERM 2065 1739056 - 1739068 + r 71 -3.3 -5.06505 | opp_overlap 1739056, overlap 1739065 ACATCGATAAATAAA TCGCC ACA GGGGA TTTTTATCTCTGATT Shewmr4_1483 1740073 - 1739183 - | hypothetical protein folX 1740512 - 1740144 - | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase TERM 2066 1741288 - 1741300 + G 91 -6.9 -5.09204 | overlap 1741280 TTACGCGCTGCTTTG GGCGG TTA TCGCC TTTTTATTCAACTAT TERM 2067 1741603 - 1741616 + G 82 -6.7 -4.77165 | ATCCAGTAAGAGTGG TGGCT GGTT AGCCA TTTTATTATCCGACG Shewmr4_1485 1740611 - 1741717 + | hypothetical protein Shewmr4_1486 1741724 - 1742635 + | hypothetical protein TERM 2068 1742703 - 1742668 - T 80 -9.8 -3.73072 | opp_overlap 1742663 1742658, overlap 1742669 AACGCCGTCATGAAA TGCCATCATAAGACCT TAAG AGGCTTTATGATGGCG TCGAATGATGTCGCT TERM 2069 1742702 - 1742669 - T 93 -13.3 -2.83522 | opp_overlap 1742663 1742658, overlap 1742668 ACGCCGTCATGAAAT GCCATCATAAGACCT TAAG AGGCTTTATGATGGC GTCGAATGATGTCGC Shewmr4_1487 1742977 - 1742753 - | hypothetical protein Shewmr4_1488 1743299 - 1743391 + | hypothetical protein TERM 2070 1743459 - 1743478 + T 100 -10.8 -5.66684 | opp_overlap 1743459 ACAAGCACATGAAAA TAGCAACC CTAG GGTTGCTA TTTTTTTATCCGTTG TERM 2071 1743478 - 1743459 - T 100 -10.8 -4.39889 | opp_overlap 1743459 ACAAGCACATGAAAA TAGCAACC CTAG GGTTGCTA TTTTTTTATCCGTTG Shewmr4_1489 1743957 - 1743523 - | hypothetical protein TERM 2072 1744099 - 1744123 + r 84 -11.5 -3.07344 | GGATGACTTCATTAG GTTATCCACAG AAT CTGTGGACAAC TATGTTGAAGACTAG TERM 2073 1744332 - 1744346 + r 79 -3.4 -5.27335 | TAAGCGTTTAATGCT GCCCGC TTT GTGAGC TTTTTCTTTCGGAAA TERM 2074 1744387 - 1744369 - R 100 -8.9 -5.63517 | opp_overlap 1744369 TTCGGAAATAAAAAA GCACTGA GGAGT TCAGTGC TTTTTTGATGATGCT TERM 2075 1744369 - 1744387 + r 100 -9.6 -5.19212 | opp_overlap 1744369 TTCGGAAATAAAAAA GCACTGAG GAG TTCAGTGC TTTTTTGATGATGCT Shewmr4_1490 1746569 - 1744416 - | phosphate acetyltransferase TERM 2076 1745421 - 1745433 + g 90 -9.1 -4.73388 | TGGTGACAGACGGTG CTCCC TTG GGGAG TTTTTGGTCACGCTT TERM 2077 1746657 - 1746678 + r 77 -10.2 -3.14548 | opp_overlap 1746657 GTCGCTAATAATAAA GCCGTTTG GCTAAG CAAACGGC TTGAATCATCTTATT TERM 2078 1746678 - 1746657 - R 100 -10.2 -4.44667 | opp_overlap 1746657 GTCGCTAATAATAAA GCCGTTTG GCTAAG CAAACGGC TTGAATCATCTTATT Shewmr4_1491 1747891 - 1746692 - | acetate kinase Shewmr4_1492 1747979 - 1748476 + | hypothetical protein pflA 1749232 - 1748492 - | pyruvate formate lyase-activating enzyme 1 TERM 2079 1748556 - 1748578 + g 79 -12 -3.26546 | overlap 1748549 TCCATGGTGTCGCGA CTCGGTGGTG CAA CGCCATCGAG TTGATAGCTTTCTCC TERM 2080 1749249 - 1749289 + r 86 -10.5 -3.75153 | opp_overlap 1749250 1749253, overlap 1749250 1749257 GTGACTCCTGTTGAA ATAAGTGAGGCTGTAGCAC ATT GTACTACAGCCTTACCTAA TTTAGCTTACAGACC TERM 2081 1749250 - 1749288 + r 95 -14 -2.84878 | opp_overlap 1749250 1749253, overlap 1749249 1749257 TGACTCCTGTTGAAA TAAGTGAGGCTGTAGCAC ATT GTACTACAGCCTTACCTA ATTTAGCTTACAGAC TERM 2082 1749288 - 1749250 - R 100 -16.2 -3.53444 | opp_overlap 1749249 1749250 1749257, overlap 1749253 TGACTCCTGTTGAAA TAAGTGAGGCTGTAGCAC ATT GTACTACAGCCTTACCTA ATTTAGCTTACAGAC TERM 2083 1749285 - 1749253 - R 100 -15.7 -3.90744 | opp_overlap 1749250 1749249 1749257, overlap 1749250 CTCCTGTTGAAATAA GTGAGGCTGTAGCAC ATT GTACTACAGCCTTAC CTAATTTAGCTTACA TERM 2084 1749257 - 1749281 + r 95 -12.9 -3.16608 | opp_overlap 1749253 1749250, overlap 1749250 1749249 TGTTGAAATAAGTGA GGCTGTAGCAC ATT GTACTACAGCC TTACCTAATTTAGCT Shewmr4_1494 1751578 - 1749296 - | formate acetyltransferase TERM 2085 1749913 - 1749923 + g 76 -8.2 -4.26903 | TGATCTCAAAGTCGA CGGC AAT GCCG TTTTCATCACGTACA TERM 2086 1750835 - 1750869 + g 79 -6.5 -4.62772 | gap 1, opp_overlap 1750849 TTGTGCGTTAGTGGC TGGGCGAGAAATATCG AAAC CG-TATTTCGCGGCCA TTTGTTTCATTTGAC TERM 2087 1751902 - 1751917 + H 79 -3.3 -5.40474 | GGTTAATCGCAAATT TGCTA GCGAGG TAGCA TTTTTTTAGCACAAT TERM 2088 1752369 - 1752357 - H 74 -6.3 -4.44548 | CAGATTTAACTAAAA TTGGT ATG ACCAA TTAACCCTTTGTGTT Shewmr4_1495 1752609 - 1753583 + | formate/nitrite transporter TERM 2089 1753655 - 1753637 - f 100 -8.8 -5.38047 | opp_overlap 1753638, overlap 1753638 CAGTCACATAAAAAA TGCCCAGT GTT ACTGGGCT TTTTTTGCTGTATTC TERM 2090 1753638 - 1753654 + F 100 -12.3 -5.62219 | opp_overlap 1753638 1753637 AGTCACATAAAAAAT GCCCAGT GTT ACTGGGC TTTTTTTGCTGTATT TERM 2091 1753654 - 1753638 - f 100 -12.3 -3.81744 | opp_overlap 1753638, overlap 1753637 AGTCACATAAAAAAT GCCCAGT GTT ACTGGGC TTTTTTTGCTGTATT TERM 2092 1754452 - 1754473 + G 74 -7.3 -4.16921 | CCACTGTGATGGTGA CCTATGTGG CGAC CCAAATAGG TTTTGCCAGTTCTTG Shewmr4_1496 1753821 - 1755389 + | hypothetical protein TERM 2093 1755484 - 1755513 + T 100 -12.3 -3.74012 | opp_overlap 1755490, overlap 1755490 TTAAGCTGAGATAAA AAAAAACGGCATC CGAG GATGCCGTTTTTG TTGTGGTTTTCTATC TERM 2094 1755490 - 1755507 + T 100 -11.3 -5.25772 | opp_overlap 1755490, overlap 1755484 TGAGATAAAAAAAAA CGGCATC CGAG GATGCCG TTTTTGTTGTGGTTT TERM 2095 1755507 - 1755490 - T 100 -11.3 -6.30182 | opp_overlap 1755490 1755484 TGAGATAAAAAAAAA CGGCATC CGAG GATGCCG TTTTTGTTGTGGTTT Shewmr4_1497 1758194 - 1755543 - | TonB-dependent receptor TERM 2096 1758757 - 1758809 + r 73 -3.8 -5.00884 | gap 1, opp_overlap 1758767 1758770, overlap 1758759 1758767 1758770 AAGAGAATAAATTAG TTTAATTA-AATAATAGGAGTGAAT TTAA ATTCACTCCTATTATTATGAGAATA TTTTTTGAACACGAT TERM 2097 1758798 - 1758767 - R 100 -16.2 -3.92178 | opp_overlap 1758767 1758759 1758757 1758770, overlap 1758770 ATTAGTTTAATTAAA TAATAGGAGTGAAT TTAA ATTCACTCCTATTA TTATGAGAATATTTT TERM 2098 1758767 - 1758798 + r 100 -16.2 -3.34431 | opp_overlap 1758767 1758770, overlap 1758759 1758757 1758770 ATTAGTTTAATTAAA TAATAGGAGTGAAT TTAA ATTCACTCCTATTA TTATGAGAATATTTT TERM 2099 1758795 - 1758770 - R 100 -13.5 -4.08651 | opp_overlap 1758767 1758759 1758757 1758770, overlap 1758767 AGTTTAATTAAATAA TAGGAGTGAAT TTAA ATTCACTCCTA TTATTATGAGAATAT TERM 2100 1758770 - 1758795 + r 100 -13.5 -3.80174 | opp_overlap 1758770 1758767, overlap 1758767 1758759 1758757 AGTTTAATTAAATAA TAGGAGTGAAT TTAA ATTCACTCCTA TTATTATGAGAATAT Shewmr4_1498 1759869 - 1758880 - | C4-dicarboxylate transporter/malic acid transport protein Shewmr4_1499 1761064 - 1759991 - | methyltransferase type 12 TERM 2101 1761270 - 1761219 - R 86 -9.8 -3.93695 | gap 2, opp_overlap 1761234 1761260 1761261, overlap 1761220 1761234 GTGATTACCGATAAA TTTCGGCC-A-TAAAAATACCCAG ACGAGG CTGGGTATTTTTAGCAGGCCGAAT CGCCTGATTACTGAA TERM 2102 1761269 - 1761220 - R 100 -13.3 -2.95896 | gap 2, opp_overlap 1761234 1761260 1761261, overlap 1761219 1761234 TGATTACCGATAAAT TTCGGCC-A-TAAAAATACCCAG ACGAGG CTGGGTATTTTTAGCAGGCCGAA TCGCCTGATTACTGA TERM 2103 1761253 - 1761234 - R 91 -7.9 -4.82901 | opp_overlap 1761234, overlap 1761220 1761219 TTTCGGCCATAAAAA TACCCAG ACGAGG CTGGGTA TTTTTAGCAGGCCGA TERM 2104 1761234 - 1761253 + r 82 -7.9 -4.56597 | opp_overlap 1761220 1761219 1761234 TTTCGGCCATAAAAA TACCCAG ACGAGG CTGGGTA TTTTTAGCAGGCCGA Shewmr4_1500 1762246 - 1761278 - | cysteine synthase TERM 2105 1761657 - 1761673 + g 70 -2.2 -5.0538 | opp_overlap 1761658 1761659, overlap 1761658 ACCGCAACAGAAGTA ATGGCT TTGCC AGCCAC TTTTTTCAGGTAACG Shewmr4_1501 1762492 - 1763826 + | RDD domain-containing protein TERM 2106 1764400 - 1764416 + G 71 -6.5 -4.19177 | CGCAGGTGAACTACC GTGACCG TGA CAGTCAC TTTATCTTCGGGGAT Shewmr4_1502 1763823 - 1764944 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2107 1764949 - 1764982 + F 100 -15.5 -4.18494 | opp_overlap 1764950 1764955, overlap 1764950 AAAAACGCTAAATTG ACTAAAGCCCCATTA TCAC TAATGGGGCTTTAGC TTTTAAATCAGCATA TERM 2108 1764981 - 1764950 - f 100 -19 -2.67441 | opp_overlap 1764949 1764950, overlap 1764955 AAAACGCTAAATTGA CTAAAGCCCCATTA TCAC TAATGGGGCTTTAG CTTTTAAATCAGCAT TERM 2109 1764950 - 1764981 + F 100 -19 -3.10775 | opp_overlap 1764950 1764955, overlap 1764949 AAAACGCTAAATTGA CTAAAGCCCCATTA TCAC TAATGGGGCTTTAG CTTTTAAATCAGCAT TERM 2110 1764976 - 1764955 - f 100 -13.1 -3.82097 | opp_overlap 1764950 1764949, overlap 1764950 GCTAAATTGACTAAA GCCCCATTA TCAC TAATGGGGC TTTAGCTTTTAAATC Shewmr4_1503 1765117 - 1765566 + | hypothetical protein TERM 2111 1765605 - 1765584 - T 79 -10.9 -3.06302 | gap 1, opp_overlap 1765584 AGCATTCCGATTTAA GCCCACAAGC CTT GCT-GTGGGC TTTATGTAAACCTTT TERM 2112 1765584 - 1765605 + T 90 -10.9 -4.05322 | gap 1, opp_overlap 1765584 AGCATTCCGATTTAA GCCCACAAGC CTT GCT-GTGGGC TTTATGTAAACCTTT Shewmr4_1504 1768024 - 1765625 - | hypothetical protein TERM 2113 1767783 - 1767821 + g 70 -11.1 -2.67981 | opp_overlap 1767797, overlap 1767779 1767780 GTCGCGTAGATTCTG GCCTCGGTGTAAACG-GGC GCC GCCGTGTTTTCACCG-GGC TGAGTTTCATAACGT TERM 2114 1767949 - 1767929 - G 82 -11.1 -3.75897 | AATCGTTAATTGAAA TTGGCTGGC AGA GCCCGCCAA GCTTGGCGAACTGAG TERM 2115 1768118 - 1768142 + r 100 -14.4 -3.54638 | opp_overlap 1768115 GCTGAAACCAAGGCG GCACTGGATG GCGGG CATCCAGTGC TTTGGGGAGGATTAT Shewmr4_1505 1768933 - 1768154 - | putative sulfate transport protein CysZ TERM 2116 1768428 - 1768415 - G 74 -2.3 -5.06816 | overlap 1768423 1768424 AGCGCTGAATAAAAA CCACA AAAT TGGGG CTAAGGTTTGCCCCA TERM 2117 1768444 - 1768423 - G 70 -4.3 -4.73912 | overlap 1768415 1768424 ATAAAAACCACAAAA TTGGGGCTA AGGT TTGCCCCAC CATGGGGACTAAAAA TERM 2118 1768719 - 1768709 - G 76 -5.4 -4.8048 | opp_overlap 1768709 CGGCCAGAGCAAAAA GTTG AGC CAAC TTAAGTACTCGGGGA TERM 2119 1769128 - 1769144 + H 75 -5.1 -4.91109 | CCTGCATCCCTATTG GTCATCG CCC TGATGGC TTTTTATACTGAGAC TERM 2120 1769454 - 1769438 - g 75 -9.3 -3.93868 | overlap 1769436 GTTTGAAAATAAAGA GGGCCGC CTT GCGGGCC AATACGCCAGTTATG TERM 2121 1770750 - 1770737 - g 76 -8.1 -4.19953 | CATTCAAGTGGAAAA CGGCT GGGA AGCCG CCGCCGAACTGGCGC TERM 2122 1772001 - 1771981 - g 73 -3.4 -5.02476 | gap 1, overlap 1771985 AGATCCGCCAAAAAA TTATTCGCT TAGG AGCGA-TAA ACCTCGCGGCGATCG Shewmr4_1506 1769175 - 1772603 + | chromosome segregation protein SMC Shewmr4_1507 1772630 - 1773670 + | cell division protein ZipA TERM 2123 1773725 - 1773703 - f 76 -10.5 -3.05022 | opp_overlap 1773703 GCGGTGATAGACAGA TGGGGCCGC TAAAT GCGGCCTCA TTTTTTGCAACTTTT TERM 2124 1773703 - 1773725 + F 100 -12.7 -5.08011 | opp_overlap 1773703 GCGGTGATAGACAGA TGGGGCCGC TAAAT GCGGCCTCA TTTTTTGCAACTTTT TERM 2125 1774458 - 1774478 + G 70 -3.1 -4.87665 | opp_overlap 1774460, overlap 1774460 1774462 GCTCGACAGTAAAAT TACCGCGTC ACG GGCGCTGTC TTTTTATGCCTACGC Shewmr4_1508 1773763 - 1775835 + | DNA ligase, NAD-dependent TERM 2126 1775859 - 1775875 + F 100 -11.5 -5.28176 | opp_overlap 1775859 CCCTTCGATTATAAA GCCCTGC CTT GCGGGGC TTTTTTATGACTAAG TERM 2127 1775875 - 1775859 - f 83 -9.3 -3.96148 | opp_overlap 1775859 CCCTTCGATTATAAA GCCCTGC CTT GCGGGGC TTTTTTATGACTAAG TERM 2128 1776133 - 1776143 + G 74 -6.8 -4.36914 | CCGATTTTTTTATAT GCCA TTC TGGC TTTTCTCGCCCGCGG TERM 2129 1776211 - 1776240 + G 70 -2.8 -4.87291 | opp_overlap 1776211 GATAGATCAGAATTA GTCAGGCTCTTC TATCCC GAAAAGTCAGAC TTTTTGCTTGCACTC TERM 2130 1776265 - 1776284 + G 71 -5.6 -4.58466 | overlap 1776267 GCACTCGCGGCGGGC TTGGGCGC GGTG GCGCTCTA TTTTGTGGTTATCGC TERM 2131 1776267 - 1776282 + G 72 -8.2 -3.89837 | overlap 1776265 ACTCGCGGCGGGCTT GGGCGC GGTG GCGCTC TATTTTGTGGTTATC Shewmr4_1509 1776061 - 1776555 + | hypothetical protein Shewmr4_1510 1776765 - 1777970 + | metal dependent phosphohydrolase TERM 2132 1778734 - 1778772 + G 71 -11.1 -2.83522 | gap 2, overlap 1778733 GAGAAGCGAATTTTA TGTGGCCGCCGCCGAGTCC TTG GGATTAG-CGGC-GCCACA ATTTAATGGGCAGGT Shewmr4_1511 1778033 - 1778884 + | NAD-dependent epimerase/dehydratase Shewmr4_1512 1779015 - 1779638 + | DSBA oxidoreductase TERM 2133 1779695 - 1779715 + F 100 -14.1 -5.28315 | opp_overlap 1779698 TTTATCTGTTTCCTA TAACCCAGC CAT GCTGGGTTA TTTTTTACCTTTTGT TERM 2134 1779712 - 1779698 - f 86 -11.4 -3.28791 | opp_overlap 1779695 ATCTGTTTCCTATAA CCCAGC CAT GCTGGG TTATTTTTTACCTTT Shewmr4_1513 1780076 - 1780342 + | hypothetical protein TERM 2135 1780511 - 1780527 + G 86 -8.7 -4.56702 | overlap 1780504 CAACGGCAGCCGACT GGATGTC AGC GGCATCC TTTATTTCGTTAGCG Shewmr4_1514 1780354 - 1782090 + | Na+/solute symporter TERM 2136 1782108 - 1782133 + F 100 -10.5 -4.79223 | opp_overlap 1782113, overlap 1782113 TCATTTAGATTAAGA AAAAAGGACGC GTTT GCGTCCTTTTG TTTTTGGTGGTGTCA TERM 2137 1782128 - 1782113 - f 100 -10.4 -5.5353 | opp_overlap 1782108 1782113 TAGATTAAGAAAAAA GGACGC GTTT GCGTCC TTTTGTTTTTGGTGG TERM 2138 1782113 - 1782128 + F 100 -10.4 -5.3104 | opp_overlap 1782113, overlap 1782108 TAGATTAAGAAAAAA GGACGC GTTT GCGTCC TTTTGTTTTTGGTGG TERM 2139 1782643 - 1782658 + G 74 -8.2 -4.07568 | overlap 1782644 CCTTTGCCAAGCGGT TGCGCC ATGA GGCGCG TTTTAAGGCCAAAGA TERM 2140 1783270 - 1783280 + G 79 -8.2 -4.3534 | overlap 1783259 AAATTCTCGGTGAGG CGCC GAT GGCG TTTTGCTGGTTAGCC Shewmr4_1515 1782240 - 1784102 + | cyclic nucleotide-binding protein Shewmr4_1516 1784102 - 1784788 + | exonuclease, RNase T and DNA polymerase III TERM 2141 1784920 - 1784886 - T 79 -10.9 -3.08679 | opp_overlap 1784886, overlap 1784888 CTTCTTCATTCAACA GACTTGGCTAAGT CCATGGTTC ACTTAGCCAAGCC TCTGATTAGAAAAAA TERM 2142 1784918 - 1784888 - T 74 -9.9 -3.10344 | opp_overlap 1784886, overlap 1784886 TCTTCATTCAACAGA CTTGGCTAAGT CCATGGTTC ACTTAGCCAAG CCTCTGATTAGAAAA Shewmr4_1517 1785461 - 1785036 - | MarR family transcriptional regulator TERM 2143 1785511 - 1785546 + H 89 -12.2 -3.31625 | opp_overlap 1785507 1785505 1785504, overlap 1785504 TTAACAAATTACGCG GTCTAAAAATAGTTTG CGCA CAAAATATTTTTAGAC TTAGTAGTTGCTTTC Shewmr4_1518 1785695 - 1786690 + | alcohol dehydrogenase TERM 2144 1786791 - 1786764 - f 100 -15 -3.60214 | opp_overlap 1786764 AGGTTAACCATATAA CGGAAGCCTTTG ACTG CAAAGACTTCCG TTTTTTCTGCTTATC TERM 2145 1786764 - 1786791 + F 100 -12.8 -5.39755 | opp_overlap 1786764 AGGTTAACCATATAA CGGAAGCCTTTG ACTG CAAAGACTTCCG TTTTTTCTGCTTATC Shewmr4_1519 1787129 - 1787728 + | hypothetical protein TERM 2146 1787755 - 1787724 - T 78 -4.4 -5.10064 | opp_overlap 1787731 1787745, overlap 1787726 1787731 CTGAAGAGATAAAAA TGTAAAAGGCCATC CGAA GATGGCCTTTGAGC CCTGTTAGCGGGATA TERM 2147 1787753 - 1787726 - T 81 -11.4 -2.77888 | opp_overlap 1787731 1787745, overlap 1787724 1787731 GAAGAGATAAAAATG TAAAAGGCCATC CGAA GATGGCCTTTGA GCCCTGTTAGCGGGA TERM 2148 1787748 - 1787731 - T 100 -11.3 -4.5115 | opp_overlap 1787731 1787745, overlap 1787726 1787724 GATAAAAATGTAAAA GGCCATC CGAA GATGGCC TTTGAGCCCTGTTAG TERM 2149 1787731 - 1787748 + T 90 -11.3 -3.57615 | opp_overlap 1787731 1787726 1787724, overlap 1787745 GATAAAAATGTAAAA GGCCATC CGAA GATGGCC TTTGAGCCCTGTTAG Shewmr4_1520 1788837 - 1787773 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 2150 1788881 - 1788861 - R 100 -6.8 -5.63517 | CTCTCAAATAAAAAA GGCAGAAC TTAGC GTGCTGCC TCAAATCGACAACAA Shewmr4_1521 1789601 - 1788930 - | GntR family transcriptional regulator Shewmr4_1522 1789919 - 1790470 + | D,D-heptose 1,7-bisphosphate phosphatase TERM 2151 1793008 - 1793038 + T 100 -8.5 -5.00884 | opp_overlap 1793007 ATTATGGTTAGAGAT GCCAAAGATAA ACTTAAACA TTATCTTTGGC TTTTTTAAGCCCGCT TERM 2152 1793163 - 1793123 - T 84 -2.7 -5.63374 | opp_overlap 1793130 1793135 1793137 1793142, overlap 1793137 TTAATACGAAAAAAA TTGAGTTCTTAAAACACTT TTT AAGTGTCTTGAATATTCAA GTCTAAGGCGAGTCC TERM 2153 1793743 - 1793731 - T 83 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 2154 1794541 - 1794525 - T 85 -9.4 -4.08546 | overlap 1794538 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 2155 1794995 - 1795023 + T 72 -8.1 -3.85698 | TCCCTAAGCTGACGG CAGTCGCAGATAC CAG GTGGCTGCAACTG TTTATCAAAAACACA TERM 2156 1796209 - 1796197 - T 72 -6.3 -4.2586 | TTAGACGAATACAAA CACTT AAG AAGTG GCACTCAATACAGCT TERM 2157 1796500 - 1796532 + T 100 -11.4 -4.7416 | opp_overlap 1796507, overlap 1796507 AAGCGCCTAATTAAA CGATAAAGCCAGCT GAATA AGCTGGCTTTTTTG TTTTTCGCGTTTTCA TERM 2158 1796507 - 1796525 + T 100 -10.3 -5.93252 | opp_overlap 1796507, overlap 1796500 TAATTAAACGATAAA GCCAGCT GAATA AGCTGGC TTTTTTGTTTTTCGC TERM 2159 1796525 - 1796507 - T 91 -10.3 -4.17448 | opp_overlap 1796507 1796500 TAATTAAACGATAAA GCCAGCT GAATA AGCTGGC TTTTTTGTTTTTCGC TERM 2160 1796661 - 1796644 - T 95 -7.7 -5.08601 | opp_overlap 1796642 1796644 TCAGGCCAATAAAAA GAGCAAC CTAG GCTGCTC TATTCTGTATGGGGT Shewmr4_1523 1797426 - 1796722 - | hypothetical protein TERM 2161 1796828 - 1796838 + g 72 -8.2 -3.83318 | overlap 1796820 TGAGTCGGCGAGTCT GGCG CTT CGCC TTGTGTTATTGCAGC TERM 2162 1797566 - 1797590 + r 71 -8.6 -3.51924 | opp_overlap 1797566 1797571, overlap 1797570 GGGATCTAGAATAAA GAAAAGGCTC ACAGG GAGCCCTTTC TTGTCTAAGTACGAG TERM 2163 1797590 - 1797566 - R 100 -10.8 -4.33417 | opp_overlap 1797566 1797570, overlap 1797571 GGGATCTAGAATAAA GAAAAGGCTC ACAGG GAGCCCTTTC TTGTCTAAGTACGAG TERM 2164 1797585 - 1797571 - R 90 -7.1 -5.14682 | opp_overlap 1797570 1797566, overlap 1797566 CTAGAATAAAGAAAA GGCTC ACAGG GAGCC CTTTCTTGTCTAAGT cpdB 1799710 - 1797653 - | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein TERM 2165 1799125 - 1799110 - G 78 -6.2 -4.78237 | TATCCCACAATAAAA TTTGTG GTGG CACAAA ACCAATATAACCAAT TERM 2166 1799201 - 1799218 + g 76 -2.7 -5.07053 | TTTAATGATATAAGG GGTGA ATAAATGC TCACC TTTTTTCACATCATT TERM 2167 1799390 - 1799406 + g 75 -8.7 -3.86194 | CATCGCTTTATAGGC TGGGTGA ACA TCGCCCA TTTGTAGGCCGACTT TERM 2168 1799764 - 1799745 - H 71 -9.4 -3.06162 | overlap 1799747 TATTTGACCCTAATA CATGTTCT TTTG AGAACATG CCCATCATCCTGTTA TERM 2169 1800493 - 1800468 - g 72 -3.9 -4.82901 | overlap 1800469 1800470 GCTTGCTCAGAAAAA CCGGCAGCC AATACTGA GGCCGCCAA TGCGGTCGCGACGCA TERM 2170 1802423 - 1802412 - g 71 -7.2 -4.07885 | CATGGTGGTTTAAAA GCCG AAAA CGGC GATAAGTTCCGTGAT Shewmr4_1525 1800402 - 1802549 + | peptidyl-dipeptidase Dcp TERM 2171 1802575 - 1802600 + F 100 -14.1 -5.46629 | opp_overlap 1802568 1802575 GTAAAAAGGGCCAAA GGCTTGGTAGG GCAA CCTATCAAGCC TTTTTTTACGCTATT TERM 2172 1802600 - 1802575 - f 93 -11.9 -3.68853 | opp_overlap 1802575, overlap 1802568 GTAAAAAGGGCCAAA GGCTTGGTAGG GCAA CCTATCAAGCC TTTTTTTACGCTATT TERM 2173 1803284 - 1803294 + G 73 -5.4 -4.63218 | CGCGCCTAAAATGGG TCAC TTT GTGA TTTTCTTAAGCGAGC Shewmr4_1526 1802775 - 1803398 + | prolyl 4-hydroxylase, alpha subunit TERM 2174 1803451 - 1803478 + F 100 -14.3 -5.28683 | TAATATGATTTCAAG GCGCAGTGTTT TTAAGT AAACACTGCGC TTTTTTGATCTTAAT Shewmr4_1527 1803815 - 1804417 + | GCN5-related N-acetyltransferase Shewmr4_1528 1804499 - 1804963 + | GCN5-related N-acetyltransferase Shewmr4_1529 1804998 - 1805393 + | hypothetical protein TERM 2175 1805400 - 1805445 + F 100 -9.9 -4.74653 | gap 1, opp_overlap 1805411 1805415, overlap 1805409 1805411 1805415 ACCATGTAAGCCTTG CCTGTGATAA-ACAAAGGAGCC TGA GGCTCCTTTGTGTTATCTGAAG TTTATTTATTGATTT TERM 2176 1805409 - 1805435 + F 100 -13.8 -3.54051 | opp_overlap 1805411 1805415, overlap 1805400 1805411 1805415 GCCTTGCCTGTGATA AACAAAGGAGCC TGA GGCTCCTTTGTG TTATCTGAAGTTTAT TERM 2177 1805411 - 1805433 + F 100 -16.4 -3.33814 | opp_overlap 1805411 1805415, overlap 1805409 1805400 1805415 CTTGCCTGTGATAAA CAAAGGAGCC TGA GGCTCCTTTG TGTTATCTGAAGTTT TERM 2178 1805433 - 1805411 - f 100 -16.4 -3.85698 | opp_overlap 1805411 1805409 1805400 1805415, overlap 1805415 CTTGCCTGTGATAAA CAAAGGAGCC TGA GGCTCCTTTG TGTTATCTGAAGTTT TERM 2179 1805429 - 1805415 - f 100 -11.4 -4.55295 | opp_overlap 1805411 1805409 1805400 1805415, overlap 1805411 CCTGTGATAAACAAA GGAGCC TGA GGCTCC TTTGTGTTATCTGAA TERM 2180 1805415 - 1805429 + F 100 -11.4 -4.31164 | opp_overlap 1805415 1805411, overlap 1805411 1805409 1805400 CCTGTGATAAACAAA GGAGCC TGA GGCTCC TTTGTGTTATCTGAA TERM 2181 1805879 - 1805891 + G 70 -4.8 -4.62471 | opp_overlap 1805869 TGAAATGTATGGCTA CAGC CTATT GCTG TTTTTGGGGCTTAAC Shewmr4_1530 1805655 - 1806041 + | hypothetical protein Shewmr4_1531 1806264 - 1807328 + | hypothetical protein Shewmr4_1532 1807321 - 1808445 + | hypothetical protein Shewmr4_1533 1808445 - 1808960 + | hypothetical protein TERM 2182 1808981 - 1809016 + F 100 -10.6 -4.77036 | gap 1, opp_overlap 1808987, overlap 1808987 AACCCTGATGATCGT TAAC-AAGATGGCGAGT CAG GCTCGCCATCTTCGCTA TTTTTCCTAGTCCAA TERM 2183 1808987 - 1809009 + F 100 -14.2 -3.33434 | opp_overlap 1808987, overlap 1808981 GATGATCGTTAACAA GATGGCGAGT CAG GCTCGCCATC TTCGCTATTTTTCCT TERM 2184 1809009 - 1808987 - f 100 -13.5 -3.63991 | opp_overlap 1808987 1808981 GATGATCGTTAACAA GATGGCGAG TCAGG CTCGCCATC TTCGCTATTTTTCCT TERM 2185 1809239 - 1809216 - g 85 -7.4 -4.89477 | opp_overlap 1809234, overlap 1809218 TGTTTAATAACAAAA CACTGTTGGC GTTA GCCATCAGTA GCGTGTGTGGGTTTG TERM 2186 1809237 - 1809218 - g 71 -7.8 -4.06582 | opp_overlap 1809234, overlap 1809216 TTTAATAACAAAACA CTGTTGGC GTTA GCCATCAG TAGCGTGTGTGGGTT Shewmr4_1534 1809200 - 1812046 + | PKD domain-containing protein TERM 2187 1812096 - 1812071 - f 74 -10.5 -2.60496 | opp_overlap 1812076, overlap 1812076 CCTTTCTTTAAATAT CAAAAGCCTGC TATT GCAGGCTTTTT TACGTTTATTCACTT TERM 2188 1812091 - 1812076 - f 100 -10.4 -4.49756 | opp_overlap 1812076, overlap 1812071 CTTTAAATATCAAAA GCCTGC TATT GCAGGC TTTTTTACGTTTATT TERM 2189 1812076 - 1812091 + F 100 -10.4 -5.25805 | opp_overlap 1812076 1812071 CTTTAAATATCAAAA GCCTGC TATT GCAGGC TTTTTTACGTTTATT Shewmr4_1535 1812253 - 1812681 + | hypothetical protein TERM 2190 1812730 - 1812706 - T 100 -10.8 -4.9792 | gap 1, overlap 1812708 GACGGCAGATAAAAA GAGGGCGCTAA TTGA TTAGCGCCC-C GATTAGGATTAAAGC TERM 2191 1812729 - 1812708 - T 100 -14.5 -4.11141 | overlap 1812706 CGGCAGATAAAAAGA GGGCGCTAA TTGA TTAGCGCCC CGATTAGGATTAAAG Shewmr4_1536 1813635 - 1812739 - | hypothetical protein TERM 2192 1812914 - 1812948 + g 72 -3.5 -4.82855 | gap 1, overlap 1812942 AAATCTTTACCGATA GTCTCGGC-CAGCTCC GCAG GGAGTTCCGCCAAGGC TTTTTGGGTTTGCTG Shewmr4_1537 1814404 - 1813646 - | hypothetical protein Shewmr4_1538 1814943 - 1814404 - | hypothetical protein TERM 2193 1814532 - 1814543 + g 71 -5.8 -4.34711 | CAGCGCTGCGTTTAG GTGC AGGT GCAC TTTTGCCTTGGTTTT TERM 2194 1814768 - 1814789 + g 73 -5.1 -4.66163 | overlap 1814770 AGTGCCACAGGCAGG TACTCGGGT ACTG ACTCGAGCA TTTTTGGATCGGCCT TERM 2195 1815050 - 1815005 - R 71 -4.7 -4.63218 | opp_overlap 1815013, overlap 1815006 CGTGTTGCAATAAAA GGTCCAAATTAAGGGGCTTGG CAAA CAAAGCTCATTAATTTGGCAC TCCCAGCGTTGCACT Shewmr4_1539 1815363 - 1815079 - | heat shock protein DnaJ domain-containing protein TERM 2196 1815758 - 1815744 - H 100 -7.1 -5.60993 | TCGGGTACAAAAAAA CCAGC TTAAT GCTGG CCTAGTCGTTACTTT TERM 2197 1815909 - 1815895 - H 100 -7.1 -5.60993 | TCGGGCACAAAAAAA CCAGC TTAAT GCTGG CCCAGTCGCTACTTT TERM 2198 1816180 - 1816193 + H 77 -4.5 -4.96501 | opp_overlap 1816180 TCTGTTATCTAAGAA TTGCC CAAG GGCGA TTTCTTTTTATAAGC Shewmr4_1540 1816672 - 1818813 + | 23S rRNA m(2)G2445 methyltransferase Shewmr4_1541 1818806 - 1819045 + | glutaredoxin 2 TERM 2199 1820301 - 1820282 - g 82 -7.2 -4.62069 | opp_overlap 1820268 1820267 1820297 GGGTGAGGGTAAAAA GACCATCA CCAT TAATGGTC AAGACCGTCATATCT Shewmr4_1542 1819047 - 1820969 + | ABC transporter ATPase component TERM 2200 1822075 - 1822059 - g 73 -10.9 -3.20227 | opp_overlap 1822073, overlap 1822057 GGGCAACTATCAATA CCATTGG ATC CCAATGG GCGAGTCCATTTCAA Shewmr4_1543 1820998 - 1822824 + | hypothetical protein TERM 2201 1822872 - 1822854 - f 100 -10.3 -5.1287 | opp_overlap 1822854 TTCAGACTTAAAAAA TCGAGGC GAAAT GCCTCGA TTTTTTTTAACTACG TERM 2202 1822854 - 1822872 + F 100 -11 -5.81412 | opp_overlap 1822854 TTCAGACTTAAAAAA TCGAGGCG AAA TGCCTCGA TTTTTTTTAACTACG Shewmr4_1544 1823012 - 1823188 + | ribosome modulation factor TERM 2203 1823244 - 1823261 + T 100 -11.3 -5.10064 | opp_overlap 1823243 1823244 GTAATGCAGCATAAT TGCCCTC AGAT GAGGGCA TTTTTGTATCTTAGC TERM 2204 1823261 - 1823244 - T 80 -11.3 -2.6627 | opp_overlap 1823244, overlap 1823243 GTAATGCAGCATAAT TGCCCTC AGAT GAGGGCA TTTTTGTATCTTAGC Shewmr4_1545 1823811 - 1823296 - | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase Shewmr4_1546 1825633 - 1823885 - | ATP-dependent protease TERM 2205 1825520 - 1825533 + g 72 -3.8 -4.79223 | opp_overlap 1825529 CAATACACGTTCTTG CCCT AAAAGC AGGG TTTTTAATCCTGTGG TERM 2206 1825938 - 1825969 + H 100 -13.2 -3.95219 | opp_overlap 1825945, overlap 1825945 CTCCGCCATATTTTA CGGAAAAGCCATCA GCAA TGATGGCTTTTTTG TTTCTGCAATTTAGG TERM 2207 1825945 - 1825962 + H 100 -9.9 -5.72622 | opp_overlap 1825945, overlap 1825938 ATATTTTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTCTGCA TERM 2208 1825962 - 1825945 - H 88 -9.9 -4.19258 | opp_overlap 1825945 1825938 ATATTTTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTCTGCA TERM 2209 1826045 - 1826060 + H 100 -5.4 -6.04953 | opp_overlap 1826043 ATATTTCACGAAATG CCATCG GCGA TGATGG TTTTTTTGTTTCTGT TERM 2210 1826142 - 1826161 + H 82 -5 -5.38054 | overlap 1826144 CCATCTTCCACTTAA TGCCATCA GCGG TGATGGTG TTTTTGTTTATAGAA TERM 2211 1826144 - 1826159 + H 79 -7.6 -4.31946 | overlap 1826142 ATCTTCCACTTAATG CCATCA GCGG TGATGG TGTTTTTGTTTATAG TERM 2212 1826825 - 1826856 + H 100 -13.2 -4.66833 | opp_overlap 1826832, overlap 1826832 CTCCGCCATATTCTA CGGAAAAGCCATCA GCAA TGATGGCTTTTTTG TTTTTGGCATTCCGG TERM 2213 1826849 - 1826832 - H 88 -9.9 -4.19258 | opp_overlap 1826832 1826825 ATATTCTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGGC TERM 2214 1826832 - 1826849 + H 100 -9.9 -5.93252 | opp_overlap 1826832, overlap 1826825 ATATTCTACGGAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGGC TERM 2215 1827561 - 1827588 + G 70 -9.2 -3.59979 | overlap 1827544 AAAGGGGCAACGCCA CCTGAGGTATTG CAAG CGATACGTCAGG TTTCCCGTGGGCAGC Shewmr4_1547 1827237 - 1827881 + | response regulator TERM 2216 1828062 - 1828081 + G 70 -10.8 -3.0094 | GGTTTATCGCATGTA TGACGTCA AAGG TGACGTCA TCTATGTGGGTAAAG TERM 2217 1829112 - 1829123 + G 74 -4.4 -4.79752 | opp_overlap 1829112 GTCCCATAAAAACAC CGTT GAAC AACG TTTTGTCTTGTTGGA TERM 2218 1829150 - 1829180 + G 70 -8.2 -3.70902 | opp_overlap 1829157, overlap 1829152 TGGAGGAGATTCTCG AACTCAATGCGCCG ATC CAGCGCATGGAGTG TTTCGATATCAGCCA TERM 2219 1829152 - 1829178 + G 75 -10.8 -3.43773 | opp_overlap 1829157, overlap 1829150 GAGGAGATTCTCGAA CTCAATGCGCCG ATC CAGCGCATGGAG TGTTTCGATATCAGC uvrC 1827991 - 1829820 + | excinuclease ABC subunit C Shewmr4_1549 1829868 - 1830416 + | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 2220 1830824 - 1830804 - T 75 -10.5 -2.89742 | overlap 1830807 TGGAATCGGTAGACA CAAGGGATT TAA AATCCCTCG CTGGTAACAGCGTGC TERM 2221 1830821 - 1830807 - T 73 -8.6 -3.5947 | overlap 1830804 AATCGGTAGACACAA GGGATT TAA AATCCC TCGCTGGTAACAGCG TERM 2222 1831041 - 1831021 - T 75 -10.5 -2.89742 | overlap 1831024 TGGAATCGGTAGACA CAAGGGATT TAA AATCCCTCG CTGGTAACAGCGTGC TERM 2223 1831038 - 1831024 - T 73 -8.6 -3.5947 | overlap 1831021 AATCGGTAGACACAA GGGATT TAA AATCCC TCGCTGGTAACAGCG TERM 2224 1831107 - 1831126 + T 100 -11.4 -5.1287 | opp_overlap 1831107 GTGAATAGTAAATAA GCCTCGAC ATTA GTCGGGGC TTTTTTGCATCTACG TERM 2225 1831126 - 1831107 - T 85 -9.2 -4.08853 | opp_overlap 1831107 GTGAATAGTAAATAA GCCTCGAC ATTA GTCGGGGC TTTTTTGCATCTACG TERM 2226 1831395 - 1831375 - T 100 -10.4 -5.24129 | opp_overlap 1831374 TTGTCCCATAAAAAA GCCCCGTG GTTTT CACGAGGC AATTTTACACATCCG Shewmr4_1550 1831691 - 1831416 - | histone family protein DNA-binding protein Shewmr4_1551 1832344 - 1831799 - | hypothetical protein TERM 2227 1832896 - 1832911 + r 86 -11.8 -3.04144 | opp_overlap 1832896 AATGTTTTTAGCTAA GCGCCC TTGC GGGCGC TGTTAGAGGTGGAGC TERM 2228 1832911 - 1832896 - R 86 -11.8 -3.05715 | opp_overlap 1832896 AATGTTTTTAGCTAA GCGCCC TTGC GGGCGC TGTTAGAGGTGGAGC Shewmr4_1552 1833871 - 1832963 - | ABC transporter related Shewmr4_1553 1834698 - 1833868 - | hypothetical protein Shewmr4_1554 1835460 - 1834792 - | hypothetical protein TERM 2229 1835007 - 1835031 + g 74 -8.5 -4.06678 | CACGCTTACCCGGCT CCCGTGGTAAC TGC GCTAGCACGGG TTTATCTCGCTCCAT TERM 2230 1835480 - 1835507 + r 100 -15 -3.29471 | opp_overlap 1835480, overlap 1835476 GCTCCAAAGAAAAAA GCATGGCTTTGT TATA ACAGAGCCATGC TTAATATCCTAGCGC TERM 2231 1835507 - 1835480 - R 100 -12.8 -5.63517 | opp_overlap 1835476 1835480 GCTCCAAAGAAAAAA GCATGGCTTTGT TATA ACAGAGCCATGC TTAATATCCTAGCGC Shewmr4_1555 1836466 - 1835627 - | hypothetical protein Shewmr4_1556 1836943 - 1837095 + | hypothetical protein TERM 2232 1838230 - 1838242 + G 74 -7.7 -4.24948 | TCTAAGTTCGGTTTA TCTGC GGC GCAGA TTTTAACTGTGGTAG TERM 2233 1839051 - 1839040 - g 71 -7.2 -4.04206 | opp_overlap 1839044 TCAGGTTTAGACAAA GCGC CAGA GCGC CGCGCTGTTATGTTG Shewmr4_1557 1837558 - 1839471 + | arginine decarboxylase TERM 2234 1839486 - 1839521 + F 100 -14.2 -5.24531 | opp_overlap 1839491, overlap 1839491 ATATTGAGTGTGTTA AAAAAGTCAGCCTAGG GTAA CTTAGGCTGACTTTTG TTTTTTATAGCCCGT TERM 2235 1839516 - 1839491 - f 100 -11.9 -5.0133 | opp_overlap 1839486 1839491 GAGTGTGTTAAAAAA GTCAGCCTAGG GTAA CTTAGGCTGAC TTTTGTTTTTTATAG TERM 2236 1839491 - 1839516 + F 100 -14.1 -5.49579 | opp_overlap 1839491, overlap 1839486 GAGTGTGTTAAAAAA GTCAGCCTAGG GTAA CTTAGGCTGAC TTTTGTTTTTTATAG TERM 2237 1839792 - 1839779 - g 80 -2.3 -5.40474 | AGGCGCGGAAAAAAA GCTTG AGAT CAGGC TCACACCCAAGCTGG Shewmr4_1558 1839753 - 1840688 + | S-adenosylmethionine decarboxylase TERM 2238 1841445 - 1841457 + G 71 -7.7 -4.07568 | opp_overlap 1841444 CTACTTAGTTAAACC CTCGA GTA TCGAG TTTTGGCAGGGCGGG Shewmr4_1559 1840909 - 1841547 + | pyridoxamine 5'-phosphate oxidase Shewmr4_1560 1841568 - 1842020 + | hypothetical protein Shewmr4_1561 1842173 - 1842748 + | YceI family protein Shewmr4_1562 1842909 - 1843265 + | hypothetical protein Shewmr4_1563 1843722 - 1844105 + | hypothetical protein Shewmr4_1564 1844295 - 1845260 + | hypothetical protein Shewmr4_1565 1847915 - 1845297 - | multi-sensor signal transduction histidine kinase TERM 2239 1845524 - 1845546 + g 76 -7.1 -4.51777 | gap 1, overlap 1845525 GACCGCCATTTTTCT C-GAGCGTTA GTTG TAACGCTCTG TTTTGATTATGCTCT TERM 2240 1845525 - 1845544 + g 82 -10.8 -3.85899 | overlap 1845524 ACCGCCATTTTTCTC GAGCGTTA GTTG TAACGCTC TGTTTTGATTATGCT TERM 2241 1847405 - 1847385 - G 91 -11.3 -4.3586 | GGATTTAGACCAAAA TATTTTCCC GAC GGGAAAATA GCGGGTCGGTCGATA TERM 2242 1848066 - 1848042 - R 100 -14.4 -4.71061 | opp_overlap 1848036 AGCGACAGCTAAAAA TGAGGCAGAC CTTAC GTCTGCCTCA TAAAGATTACTTATA Shewmr4_1566 1848600 - 1848073 - | disulphide bond formation protein DsbB TERM 2243 1848651 - 1848619 - R 72 -9.3 -3.15579 | opp_overlap 1848626 1848649, overlap 1848626 TGAACTCCGTATCAA CAAAAAACGCCCT CGAAGGT AGGGCGTTTTTTT GACTTTACTGAACTC TERM 2244 1848626 - 1848644 + r 95 -7.4 -5.58209 | opp_overlap 1848619 1848626 CGTATCAACAAAAAA CGCCCT CGAAGGT AGGGCG TTTTTTTGACTTTAC TERM 2245 1848644 - 1848626 - R 95 -7.4 -5.5112 | opp_overlap 1848626, overlap 1848619 CGTATCAACAAAAAA CGCCCT CGAAGGT AGGGCG TTTTTTTGACTTTAC nhaB 1850297 - 1848696 - | sodium/proton antiporter Shewmr4_1568 1850601 - 1851326 + | fatty acid metabolism regulator TERM 2246 1851381 - 1851348 - T 91 -12 -3.53091 | gap 1, opp_overlap 1851349 1851355, overlap 1851355 ATGCGCCTTGTTAAA CGAAAAAGCCGTTTC ATTGA GAAACGGCTTTTT-G CTTTTTAGTCAGTGA TERM 2247 1851349 - 1851382 + T 100 -12 -4.7497 | gap 1, opp_overlap 1851348 1851355, overlap 1851355 TGCGCCTTGTTAAAC G-AAAAAGCCGTTTC ATTGA GAAACGGCTTTTTGC TTTTTAGTCAGTGAG TERM 2248 1851355 - 1851375 + T 100 -11.2 -5.1971 | opp_overlap 1851348 1851355, overlap 1851349 TTGTTAAACGAAAAA GCCGTTTC ATTGA GAAACGGC TTTTTGCTTTTTAGT TERM 2249 1851375 - 1851355 - T 100 -11.2 -4.98531 | opp_overlap 1851355 1851349, overlap 1851348 TTGTTAAACGAAAAA GCCGTTTC ATTGA GAAACGGC TTTTTGCTTTTTAGT Shewmr4_1569 1852928 - 1851402 - | hypothetical protein TERM 2250 1852031 - 1852017 - G 71 -7.8 -3.97834 | GAACTCCATCATAAA GCGGTC GGT GACCAC GCCATCATCATATAG Shewmr4_1570 1854212 - 1852938 - | hypothetical protein TERM 2251 1853282 - 1853313 + g 72 -8 -3.94746 | opp_overlap 1853292 TGCCACCAGTTTCTT GGGAGTAGAAGAAC TCAT GTTCGTCCACTTCC TTTGCTTGGGTATGG TERM 2252 1853342 - 1853352 + g 70 -2.4 -4.91712 | opp_overlap 1853342 GGTGGCGGATATAGA CCAC CTC GAGG TTTTTGTAGGTTCGG TERM 2253 1853631 - 1853651 + g 70 -2.5 -4.96773 | overlap 1853632 AAGCTCTGCCAGTTC CTGCTCTAA CTC TTTGAGCAA TTTCTTTTTACTTGC TERM 2254 1854227 - 1854254 + r 100 -10.7 -4.72272 | gap 1, opp_overlap 1854231, overlap 1854231 CCTCCCAAACCCCAG CGAAGGCTTTGG CAACA CCAAAGCC-TCG TTTTTAGTGAGCGCA TERM 2255 1854251 - 1854231 - R 86 -11.9 -3.08966 | opp_overlap 1854227 1854231 CCAAACCCCAGCGAA GGCTTTGGC AAC ACCAAAGCC TCGTTTTTAGTGAGC TERM 2256 1854231 - 1854251 + r 81 -11.2 -3.28472 | opp_overlap 1854231, overlap 1854227 CCAAACCCCAGCGAA GGCTTTGG CAACA CCAAAGCC TCGTTTTTAGTGAGC TERM 2257 1854299 - 1854322 + r 77 -3.8 -5.21709 | opp_overlap 1854276 1854299 1854302, overlap 1854302 1854303 ACGAACCCGTAAATA CCACTCAGAC AGGA GTCTGACTTG TTTTTTGGTATAGCC TERM 2258 1854618 - 1854635 + r 72 -9.9 -2.74144 | opp_overlap 1854630, overlap 1854617 GCATTGAGTGCGGAG CGGTCAA ACAA TTGACCG GTTTCGGGGTCACGG TERM 2259 1856342 - 1856321 - R 75 -2.3 -5.37171 | opp_overlap 1856334 1856340 1856341, overlap 1856331 1856334 1856335 AATATCAAATAAAAA CAATAACAA ATGA TTGCAATTG CAATTATTGCACTTG TERM 2260 1856420 - 1856434 + r 81 -7.1 -4.64144 | opp_overlap 1856420 GAGGTCATAAAAAAA GAGCC ACTTG GGCTC TTTTTCGGGATTATT TERM 2261 1856434 - 1856420 - R 100 -7.1 -5.626 | opp_overlap 1856420 GAGGTCATAAAAAAA GAGCC ACTTG GGCTC TTTTTCGGGATTATT Shewmr4_1572 1857043 - 1856459 - | superoxide dismutase Shewmr4_1573 1857270 - 1857602 + | glutaredoxin-like protein TERM 2262 1857637 - 1857661 + T 100 -14.4 -5.4505 | opp_overlap 1857637 CAGAATAATAAAAAA GCCGCTAAGT GAATA ACTTAGCGGC TTTTTTGTTGCCGAA TERM 2263 1857661 - 1857637 - T 100 -14.4 -5.68489 | opp_overlap 1857637 CAGAATAATAAAAAA GCCGCTAAGT GAATA ACTTAGCGGC TTTTTTGTTGCCGAA TERM 2264 1857694 - 1857730 + T 86 -10.2 -3.86202 | gap 1, overlap 1857695 1857727 CTAACACAAGGATTC GGCGGTGAGTGATGCGC TATA GCGC-TTATTCACCGCG TTTAGTGTGATGCAG TERM 2265 1857695 - 1857729 + T 100 -13.7 -2.914 | gap 1, overlap 1857694 1857727 TAACACAAGGATTCG GCGGTGAGTGATGCGC TATA GCGC-TTATTCACCGC GTTTAGTGTGATGCA Shewmr4_1574 1858970 - 1857732 - | uracil-xanthine permease Shewmr4_1575 1859186 - 1860268 + | hypothetical protein TERM 2266 1860750 - 1860740 - g 70 -8.2 -3.78934 | overlap 1860741 TGTCGCCGAGAACAA GCGC TGT GCGC TGGTGGTCAGCGGCC TERM 2267 1860756 - 1860788 + G 71 -7.5 -3.97709 | opp_overlap 1860741, overlap 1860755 CGCTGTGCGCTGGTG GTCAGCGGCCGCTCG GCG CCCGCGGATGCTGGC TTCTTGTTACCTGAT Shewmr4_1576 1860348 - 1861058 + | DNA replication initiation factor TERM 2268 1861103 - 1861135 + T 100 -13.6 -3.63744 | opp_overlap 1861108, overlap 1861108 ACACTTATTTCCACC TAAAACGCCTGATG TACCT CATCGGGCGTTTTG TATTTTAAGGCCAAA TERM 2269 1861108 - 1861130 + T 100 -11.3 -4.89567 | opp_overlap 1861108, overlap 1861103 TATTTCCACCTAAAA CGCCTGATG TACCT CATCGGGCG TTTTGTATTTTAAGG TERM 2270 1861130 - 1861108 - T 83 -9.1 -4.18494 | opp_overlap 1861108 1861103 TATTTCCACCTAAAA CGCCTGATG TACCT CATCGGGCG TTTTGTATTTTAAGG Shewmr4_1577 1862753 - 1861491 - | metal dependent phosphohydrolase TERM 2271 1861545 - 1861556 + g 70 -4.4 -4.63527 | overlap 1861541 TTCGCGCGGATTGAG GTAC TCGT GTAC TTTTTCGGGTAATGC TERM 2272 1862086 - 1862100 + g 76 -5.7 -4.6526 | opp_overlap 1862075 TTAAGCTCTGGTGAA GACCA AGGCG TGGTC TTTTTCAAAATTTGT Shewmr4_1578 1862870 - 1863565 + | prolyl 4-hydroxylase, alpha subunit Shewmr4_1579 1864932 - 1863583 - | periplasmic sensor signal transduction histidine kinase Shewmr4_1580 1865606 - 1864923 - | two component transcriptional regulator Shewmr4_1581 1866119 - 1865772 - | hypothetical protein TERM 2273 1866079 - 1866067 - G 76 -3.3 -5.1925 | TCATAACGTAAAAAA TGCGC ACC GAGCA GCCAAAAGGCGACAA TERM 2274 1866233 - 1866217 - R 100 -12.3 -5.64304 | opp_overlap 1866217 TAAGACAACAAAAAA GCCCAAC AGA GTTGGGC TTAGATAGAAGATAC TERM 2275 1866217 - 1866233 + r 93 -12.3 -3.05816 | opp_overlap 1866217 TAAGACAACAAAAAA GCCCAAC AGA GTTGGGC TTAGATAGAAGATAC Shewmr4_1582 1867590 - 1866277 - | sodium:dicarboxylate symporter TERM 2276 1871209 - 1871227 + G 71 -7.5 -4.02334 | ATAGAAAAAGAGCCG CAAACAG TTTAT CTGTTTG TTTCTGATGTAAATA Shewmr4_1583 1867810 - 1871484 + | Ig domain-containing protein TERM 2277 1871541 - 1871514 - T 70 -9.3 -2.76171 | opp_overlap 1871514, overlap 1871519 ATTCACTTAACAGTA TTAAAGGCGAT CTTAGC ATCGCCTCTAA TTTTTGTAGTGTGAG TERM 2278 1871514 - 1871541 + T 89 -7.1 -4.95155 | opp_overlap 1871514 1871519 ATTCACTTAACAGTA TTAAAGGCGAT CTTAGC ATCGCCTCTAA TTTTTGTAGTGTGAG Shewmr4_1584 1872899 - 1871565 - | succinylarginine dihydrolase TERM 2279 1872027 - 1872053 + g 71 -6.6 -4.2573 | overlap 1872019 TTTGGCCGTCGGAAC CTCGATAAAGAA TAA TTCGGTATCGAG TTTTCGCCTTATTTC TERM 2280 1874176 - 1874165 - g 70 -4.4 -4.63218 | TTGGGGTGAAGAAAA CCAT GATG ATGG CGCAGCGTTTGTACG TERM 2281 1875293 - 1875283 - g 70 -3.2 -4.7497 | overlap 1875285 CTTATCGACGAAAAA CGCA AAC TGCA TGTTTGTGGTAATAA Shewmr4_1585 1873183 - 1875867 + | DNA topoisomerase I TERM 2282 1875906 - 1875928 + T 100 -12 -4.87592 | opp_overlap 1875906 1875907, overlap 1875907 TTGTGTATTTGCAAA TGGGCTCACT TTA AGTGGGCCCG TTTTGTTATCTATGC TERM 2283 1875907 - 1875927 + T 100 -13.3 -3.5147 | opp_overlap 1875906 1875907, overlap 1875906 TGTGTATTTGCAAAT GGGCTCACT TTA AGTGGGCCC GTTTTGTTATCTATG TERM 2284 1875927 - 1875907 - T 77 -11.1 -2.74144 | opp_overlap 1875907 1875906, overlap 1875906 TGTGTATTTGCAAAT GGGCTCACT TTA AGTGGGCCC GTTTTGTTATCTATG TERM 2285 1876027 - 1876045 + T 100 -13.2 -3.86897 | opp_overlap 1876027 CCTAAGCATAAAAAA GCCAAGTC ACT GACTTGGC TTTCTGAGAGGTAAA TERM 2286 1876045 - 1876027 - T 100 -13.2 -5.37345 | opp_overlap 1876027 CCTAAGCATAAAAAA GCCAAGTC ACT GACTTGGC TTTCTGAGAGGTAAA Shewmr4_1586 1876864 - 1876085 - | hypothetical protein TERM 2287 1876150 - 1876165 + g 74 -4.6 -4.83169 | overlap 1876152 TTTTGGATTTAGGTG CGCTCG GAGC CGAGAG TTTTTGTGCACCCAT cysB 1877092 - 1878066 + | transcriptional regulator CysB TERM 2288 1878122 - 1878083 - T 100 -12.5 -3.91084 | gap 1, opp_overlap 1878094, overlap 1878094 TTATCGTGAATCAAA CACAATAAAAATGCCGCA ATAGA TGCGGCATTTTT-TTATG AGTATTGAATTGTGG TERM 2289 1878094 - 1878112 + T 100 -10.3 -5.65177 | opp_overlap 1878083 1878094 CAAACACAATAAAAA TGCCGCA ATAGA TGCGGCA TTTTTTTATGAGTAT TERM 2290 1878112 - 1878094 - T 100 -10.3 -5.33331 | opp_overlap 1878094, overlap 1878083 CAAACACAATAAAAA TGCCGCA ATAGA TGCGGCA TTTTTTTATGAGTAT Shewmr4_1588 1878809 - 1878147 - | two component LuxR family transcriptional regulator TERM 2291 1878285 - 1878269 - G 72 -8 -3.85698 | opp_overlap 1878269 1878268 TGGTGGCCTCAGAAA CGCCTA AGTCA TAGGCG ATTTGCTTGTTAAGC TERM 2292 1879001 - 1878976 - R 73 -5.4 -4.63592 | TTTGAAGAAAAATAA GCCCCAAAAC CAGAGT GTTTAAGGGC TAGAGTGCGTTATTG Shewmr4_1589 1879461 - 1879030 - | thioesterase superfamily protein TERM 2293 1879570 - 1879596 + r 89 -12.4 -2.81208 | opp_overlap 1879575, overlap 1879575 GGTAAAACGAAAAGA AAAAAGGCTTCC AGT GGAAGCCTTTTC ATATTTTCAATCGAC TERM 2294 1879575 - 1879591 + r 100 -12.3 -4.55826 | opp_overlap 1879575, overlap 1879570 AACGAAAAGAAAAAA GGCTTCC AGT GGAAGCC TTTTCATATTTTCAA TERM 2295 1879591 - 1879575 - R 100 -12.3 -5.85244 | opp_overlap 1879575 1879570 AACGAAAAGAAAAAA GGCTTCC AGT GGAAGCC TTTTCATATTTTCAA Shewmr4_1590 1880676 - 1879612 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2296 1879725 - 1879743 + g 85 -7.4 -4.90013 | opp_overlap 1879727, overlap 1879727 TTTGGCCGTAACACA GAGGTTGA CCC TCAACCAC TTTTTGATTGCCTTC TERM 2297 1880079 - 1880116 + g 71 -5.5 -4.56597 | overlap 1880081 CTTTTGCTGCGCGCA CCGCATCGACGGCGATA TTAA TATTGCCATCGGTACCG TTTTTAAAGCCAACG TERM 2298 1880833 - 1880821 - R 70 -7.7 -3.61178 | opp_overlap 1880821, overlap 1880825 CCTATTTAGCCTAAA TCGAG AGA CTCGA TTGCCTCGTTCGAAA Shewmr4_1591 1881670 - 1880858 - | hypothetical protein TERM 2299 1882668 - 1882644 - g 79 -7.2 -4.56597 | opp_overlap 1882621, overlap 1882621 1882615 GTTGCTGCTGAAAAA CGTCGTCAAT TCTCT ATCAACGACG CCGAAGTGATGGAAT TERM 2300 1883602 - 1883591 - g 78 -5.8 -4.75472 | opp_overlap 1883590 1883601, overlap 1883586 GCCAGAGGAAGAAAA CCCA ATGT TGGG CTTCCGTGGTGCGAG Shewmr4_1592 1881795 - 1884164 + | phosphoenolpyruvate synthase TERM 2301 1884213 - 1884198 - f 100 -10.4 -5.03747 | opp_overlap 1884198 AAAGGTGTTAAAAAA GCCGCT TTTT AGCGGC TTTTTTTTGTTTATA TERM 2302 1884198 - 1884213 + F 100 -10.4 -6.28967 | opp_overlap 1884198 AAAGGTGTTAAAAAA GCCGCT TTTT AGCGGC TTTTTTTTGTTTATA TERM 2303 1886554 - 1886532 - g 74 -7.1 -4.29302 | gap 1, opp_overlap 1886529 1886546, overlap 1886529 CCGACATTAAAACAA CGACTCG-AT GGTC ATGCGAGTCG CGGTTATGATCTGGC Shewmr4_1593 1884264 - 1887305 + | FAD linked oxidase domain-containing protein TERM 2304 1887378 - 1887363 - f 78 -9 -3.83998 | opp_overlap 1887363 CCATGCCACACTAAA CCAGTC GTCA GACTGG TTTTTACTTTTAGGG TERM 2305 1887363 - 1887378 + F 100 -9 -5.0925 | opp_overlap 1887363 CCATGCCACACTAAA CCAGTC GTCA GACTGG TTTTTACTTTTAGGG Shewmr4_1594 1887400 - 1887891 + | hypothetical protein Shewmr4_1595 1888030 - 1888461 + | MarR family transcriptional regulator Shewmr4_1596 1888747 - 1892535 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2306 1892583 - 1892559 - T 100 -14.3 -4.3739 | opp_overlap 1892559 TATTGGTCGATAAAA CCGCGACTAGC CAC GCTAGTGGCGG TTTTTATTTGCCAGT TERM 2307 1892559 - 1892583 + T 100 -14.3 -5.27938 | opp_overlap 1892559 TATTGGTCGATAAAA CCGCGACTAGC CAC GCTAGTGGCGG TTTTTATTTGCCAGT Shewmr4_1597 1892945 - 1892598 - | hypothetical protein TERM 2308 1893131 - 1893103 - R 100 -15.3 -3.37464 | opp_overlap 1893124, overlap 1893105 TGAGGAAGGTGAGAA GAGGCGGACAACG AGT CGTTGCCCGCCTA AAGCGTGATTAGTCT TERM 2309 1893129 - 1893105 - R 100 -17.9 -3.25459 | opp_overlap 1893124, overlap 1893103 AGGAAGGTGAGAAGA GGCGGACAACG AGT CGTTGCCCGCC TAAAGCGTGATTAGT Shewmr4_1598 1894174 - 1893140 - | leucine dehydrogenase TERM 2310 1894229 - 1894203 - H 100 -9.5 -4.87592 | overlap 1894204 CTATACACAATAAAA CGTCGATGGAA TCACT TCCCATCGACA GCTCGTTATATTTAT TERM 2311 1894228 - 1894204 - H 83 -10.8 -3.5147 | overlap 1894203 TATACACAATAAAAC GTCGATGGAA TCACT TCCCATCGAC AGCTCGTTATATTTA TERM 2312 1894328 - 1894345 + H 80 -6.3 -4.8048 | CAATCTAGCTTTCCA CTTTACG TAAA CGTAAGG TTTTTAGTGTGAAAC Shewmr4_1599 1894454 - 1894912 + | hypothetical protein TERM 2313 1894958 - 1894931 - T 100 -11.4 -4.17023 | opp_overlap 1894932 1894936, overlap 1894932 1894936 CGAATTAGTTTAAAA GTAAAGGCACTC AGTT GAGTGCCTTTAT TGTTTGGGGTGAAGC TERM 2314 1894957 - 1894932 - T 100 -14.9 -3.09732 | opp_overlap 1894932 1894936, overlap 1894931 1894936 GAATTAGTTTAAAAG TAAAGGCACTC AGTT GAGTGCCTTTA TTGTTTGGGGTGAAG TERM 2315 1894932 - 1894957 + T 100 -14.9 -3.9392 | opp_overlap 1894932 1894931 1894936, overlap 1894936 GAATTAGTTTAAAAG TAAAGGCACTC AGTT GAGTGCCTTTA TTGTTTGGGGTGAAG TERM 2316 1894953 - 1894936 - T 100 -11.3 -4.20806 | opp_overlap 1894932 1894936, overlap 1894932 1894931 TAGTTTAAAAGTAAA GGCACTC AGTT GAGTGCC TTTATTGTTTGGGGT TERM 2317 1894936 - 1894953 + T 100 -11.3 -4.57581 | opp_overlap 1894936 1894932 1894931, overlap 1894932 TAGTTTAAAAGTAAA GGCACTC AGTT GAGTGCC TTTATTGTTTGGGGT Shewmr4_1600 1896148 - 1895009 - | cupin 4 family protein TERM 2318 1896185 - 1896161 - R 100 -11.5 -5.04385 | opp_overlap 1896161 CATAGTGTCAAAAAA GGCGACTACAT CGA ATGTAACCGCC TTAATCCTTATTTAT Shewmr4_1601 1897641 - 1896271 - | adenylosuccinate lyase TERM 2319 1896994 - 1897017 + g 71 -11 -2.80091 | overlap 1896993 GTAAGCAGATAAGTG GGCGTTGTAG TTAC CTACGGCGCC GTTAATTTTACCCAT Shewmr4_1602 1898288 - 1897671 - | hypothetical protein trmU 1899410 - 1898292 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TERM 2320 1898824 - 1898839 + g 80 -2.5 -5.4477 | CTGTCCTTTTTATCA TGGGT AATTAA GCCCA TTTTTTTAGCGATTT TERM 2321 1898858 - 1898868 + g 71 -6.8 -4.19238 | overlap 1898855 TTTTAGCGATTTCAC GCAC TTC GTGC TTTTCGAGTTCACCA Shewmr4_1604 1900122 - 1899631 - | NUDIX hydrolase TERM 2322 1899885 - 1899869 - G 76 -6.5 -4.44974 | overlap 1899854 1899873 GTAAAGCGCACAAAA GCGAGTG CTT CACTGGC ACTAAACTGATAAAT TERM 2323 1899914 - 1899935 + g 71 -6.5 -4.15788 | opp_overlap 1899901 1899911, overlap 1899915 ATCCCCACTAAGCCT TGGGGCTCA AGAT TCAGCCCCG TTTCTTCGAGCACTT Shewmr4_1605 1900978 - 1900193 - | ribosomal large subunit pseudouridine synthase E TERM 2324 1900738 - 1900721 - G 71 -7.7 -4.00042 | opp_overlap 1900717, overlap 1900706 CGGCTTATTAAATAA GACGATC ATCG GATCGCC TTGGGGTTTTGTACG TERM 2325 1900884 - 1900910 + g 79 -13 -3.06915 | overlap 1900906 GTCTTCTTGTTGCTT GCGCGGCTATCA GCT TGATTGTCGCGC TTAAATGAAGTGCGT Shewmr4_1606 1901329 - 1903554 + | isocitrate dehydrogenase, NADP-dependent TERM 2326 1903614 - 1903646 + F 100 -16.5 -3.63744 | opp_overlap 1903619, overlap 1903619 ACACTTATTTCCATC TAAAACGCTCGATGA ACC TCATCGGGCGTTTTG TATTTTAAGGCCAAA TERM 2327 1903619 - 1903641 + F 100 -14.2 -4.89567 | opp_overlap 1903619, overlap 1903614 TATTTCCATCTAAAA CGCTCGATGA ACC TCATCGGGCG TTTTGTATTTTAAGG TERM 2328 1903641 - 1903619 - f 100 -12 -4.18494 | opp_overlap 1903619 1903614 TATTTCCATCTAAAA CGCTCGATGA ACC TCATCGGGCG TTTTGTATTTTAAGG Shewmr4_1608 1904027 - 1904341 + | small multidrug resistance protein Shewmr4_1609 1904570 - 1906096 + | 6-phosphogluconate dehydrogenase TERM 2329 1906112 - 1906127 + F 100 -10.4 -5.27923 | opp_overlap 1906111 1906102 1906112 ATAAATCGTACAAAG GCCCCT AAAT AGGGGC TTTTTTATCGGGTTA TERM 2330 1906127 - 1906112 - f 76 -10.4 -2.97051 | opp_overlap 1906112, overlap 1906111 1906102 ATAAATCGTACAAAG GCCCCT AAAT AGGGGC TTTTTTATCGGGTTA Shewmr4_1610 1906641 - 1908764 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 2331 1909051 - 1909061 + G 71 -6.8 -4.25104 | CTAAAGCCTGGTGTG TCGG CTG CCGA TTTTGCTAAGGCCCA Shewmr4_1611 1908775 - 1909233 + | hypothetical protein TERM 2332 1909258 - 1909279 + F 100 -13.1 -3.86266 | opp_overlap 1909262, overlap 1909262 TAGGTTAACATTGCA TAAAGGGCC GCAA GGCCCTTTA TTATTGTGGTGGTCT TERM 2333 1909275 - 1909262 - f 83 -9.5 -3.92602 | opp_overlap 1909262 1909258 TTAACATTGCATAAA GGGCC GCAA GGCCC TTTATTATTGTGGTG TERM 2334 1909262 - 1909275 + F 95 -9.5 -4.53419 | opp_overlap 1909262, overlap 1909258 TTAACATTGCATAAA GGGCC GCAA GGCCC TTTATTATTGTGGTG Shewmr4_1612 1909514 - 1910224 + | hypothetical protein TERM 2335 1910633 - 1910621 - g 72 -4.1 -4.85599 | CTGATGCGATAAAAA TCACC TTG GATGA TGGCAGTGTGTATCA Shewmr4_1613 1910380 - 1910697 + | hypothetical protein Shewmr4_1614 1911674 - 1910775 - | LysR family transcriptional regulator TERM 2336 1911800 - 1911774 - H 95 -13.8 -2.78384 | opp_overlap 1911774 TTCCGCCTTATGACA GTAGTGGGCTCA AAA TGAGTCCACTAC TTTGCGTTTAGGGCG TERM 2337 1911774 - 1911800 + H 100 -16 -3.84451 | opp_overlap 1911774 TTCCGCCTTATGACA GTAGTGGGCTCA AAA TGAGTCCACTAC TTTGCGTTTAGGGCG Shewmr4_1615 1911876 - 1912355 + | hypothetical protein Shewmr4_1616 1912426 - 1913235 + | extradiol ring-cleavage dioxygenase III subunit B TERM 2338 1913297 - 1913249 - T 100 -16.2 -2.73619 | opp_overlap 1913254, overlap 1913254 AATCAGCCCCTAAAG CAAAAGGTTCGTCATGTTGCGT ATTAA ACGCATCGTGACGAACCTTTTT ATATTTAAAGCCTTG TERM 2339 1913292 - 1913254 - T 100 -16.1 -4.54727 | opp_overlap 1913254, overlap 1913249 GCCCCTAAAGCAAAA GGTTCGTCATGTTGCGT ATTAA ACGCATCGTGACGAACC TTTTTATATTTAAAG TERM 2340 1913254 - 1913292 + T 100 -18.3 -5.19879 | opp_overlap 1913254 1913249 GCCCCTAAAGCAAAA GGTTCGTCATGTTGCGT ATTAA ACGCATCGTGACGAACC TTTTTATATTTAAAG TERM 2341 1913328 - 1913343 + T 71 -3.2 -4.9792 | gap 1, overlap 1913328 1913330 TCTATTTTAACCTAG CC-GCCT TGT GGGCTGG TTTTTCTCTCAACTC Shewmr4_1617 1914264 - 1913389 - | 1,4-dihydroxy-2-naphtoate prenyltransferase TERM 2342 1914063 - 1914076 + g 70 -4.5 -4.62069 | GGCCGAGCCGTTCGG CGGTA TCGA TGCCG TTTTTAAAGTCAAAG TERM 2343 1914495 - 1914479 - H 70 -8 -3.57792 | TGATCCACTGCCAAA CATCGG TTAAG CCGATG AACTTCACCCCTATT TERM 2344 1915246 - 1915258 + G 83 -3.3 -5.40004 | AAACACTTAGCCCCA GCGAT TCA ACCGC TTTTTTCCTTTGATA Shewmr4_1618 1914589 - 1915542 + | short-chain dehydrogenase/reductase SDR TERM 2345 1915986 - 1915998 + G 70 -9.1 -3.57144 | opp_overlap 1915986 CTGCTCCTTCCAAGA GCCTG AGG CAGGC TTTGACCATCAAGCC Shewmr4_1619 1915657 - 1916523 + | acyl-CoA thioesterase II TERM 2346 1916671 - 1916649 - g 73 -2.7 -5.03314 | gap 1, overlap 1916650 GCTATTTGGAAAAAA TTCTCCTGCC TCCA GGCAGT-GAA ATTACCATTGCGATT Shewmr4_1620 1916525 - 1916929 + | hypothetical protein TERM 2347 1916983 - 1916997 + T 95 -7.1 -5.55769 | opp_overlap 1916983 GCATTTTATCCAAAA GGGGA GTTAA TCCCC TTTTTTATTATGCGG TERM 2348 1916997 - 1916983 - T 73 -7.1 -4.1899 | opp_overlap 1916983 GCATTTTATCCAAAA GGGGA GTTAA TCCCC TTTTTTATTATGCGG Shewmr4_1621 1917895 - 1917014 - | LysR family transcriptional regulator Shewmr4_1622 1918076 - 1919386 + | major facilitator transporter TERM 2349 1919488 - 1919518 + F 76 -11.2 -2.63723 | overlap 1919487 TGATTCTCGTACTCA TTCGGCAACTCATT CAA ATTGAGATGCCGAA ATTCATTGATAACGA Shewmr4_1623 1919763 - 1921325 + | MATE efflux family protein TERM 2350 1921406 - 1921360 - T 82 -6.9 -4.91109 | gap 1, opp_overlap 1921369 1921375, overlap 1921364 1921369 TTGTCATCATAAAAA CTCATAAAATATAAAGGCCACT GAAA AGTGGCCTTTATATTTAA-AAC TAACATTTTTCAAAT TERM 2351 1921403 - 1921364 - T 100 -16.8 -2.89738 | opp_overlap 1921369 1921375, overlap 1921360 1921369 CATCATAAAAACTCA TAAAATATAAAGGCCACT GAAA AGTGGCCTTTATATTTAA AACTAACATTTTTCA TERM 2352 1921398 - 1921369 - T 100 -16.7 -4.56887 | opp_overlap 1921369 1921375, overlap 1921364 1921360 TAAAAACTCATAAAA TATAAAGGCCACT GAAA AGTGGCCTTTATA TTTAAAACTAACATT TERM 2353 1921369 - 1921398 + T 100 -16.7 -3.5764 | opp_overlap 1921369 1921364 1921360, overlap 1921375 TAAAAACTCATAAAA TATAAAGGCCACT GAAA AGTGGCCTTTATA TTTAAAACTAACATT TERM 2354 1921375 - 1921392 + T 100 -11.3 -4.33258 | opp_overlap 1921369 1921364 1921360, overlap 1921369 CTCATAAAATATAAA GGCCACT GAAA AGTGGCC TTTATATTTAAAACT Shewmr4_1624 1921736 - 1921533 - | hypothetical protein Shewmr4_1625 1922044 - 1922355 + | hypothetical protein TERM 2355 1922754 - 1922740 - g 70 -2.8 -4.75404 | AAAGCGTACGAAAAA CAGTAT CAA ATGCTG ATCACTACCTTGCCT TERM 2356 1923053 - 1923039 - g 74 -4.2 -4.77079 | CACAGAGGAAGAAAA GCAGGA ATA TCTTGC TCAAGTGAATGCTAA TERM 2357 1923258 - 1923290 + G 76 -6.5 -4.56597 | gap 1, opp_overlap 1923258 TCAGGAAGTATTTAA TCTGTTTGCTTATG ATGTTG CA-GAGCAAACAGA TTTTTCAAAGGGAAA Shewmr4_1626 1922383 - 1923477 + | hypothetical protein TERM 2358 1923514 - 1923491 - T 100 -15.4 -4.67755 | opp_overlap 1923491 1923495, overlap 1923495 AGATTTATCTAAAAA GAAAGGCTGC AATT GCAGCCTTTC TTTTTATGAAGCTAT TERM 2359 1923491 - 1923514 + T 100 -15.4 -4.84761 | opp_overlap 1923491 1923495, overlap 1923495 AGATTTATCTAAAAA GAAAGGCTGC AATT GCAGCCTTTC TTTTTATGAAGCTAT TERM 2360 1923510 - 1923495 - T 100 -10.4 -4.89063 | opp_overlap 1923491 1923495, overlap 1923491 TTATCTAAAAAGAAA GGCTGC AATT GCAGCC TTTCTTTTTATGAAG TERM 2361 1923495 - 1923510 + T 100 -10.4 -4.96501 | opp_overlap 1923495 1923491, overlap 1923491 TTATCTAAAAAGAAA GGCTGC AATT GCAGCC TTTCTTTTTATGAAG Shewmr4_1627 1926582 - 1923526 - | acriflavin resistance protein TERM 2362 1924714 - 1924724 + g 70 -2.4 -5.03961 | opp_overlap 1924709, overlap 1924709 GGAGAATTTAGGAAA ACCG CTG CGGA TTTTCTTCTTTAATT TERM 2363 1925260 - 1925248 - G 71 -5.5 -4.59109 | GATATTGGGTAAAAA CACGA TAG CCGTG GTCATAGTGCCCGCA TERM 2364 1925841 - 1925862 + g 72 -8 -3.86202 | CGTCACCTAAGGTCA GCCCTGGT AATAGC ACTAGGGC TTTAATGTCCTCCAG Shewmr4_1628 1929842 - 1926579 - | acriflavin resistance protein Shewmr4_1629 1930931 - 1929855 - | RND family efflux transporter MFP subunit TERM 2365 1931182 - 1931196 + r 100 -12.8 -4.431 | opp_overlap 1931182 AATACCAATAAAAAA GCGCCC AGA GGGCGC TTTTATCGATAAATG TERM 2366 1931196 - 1931182 - R 100 -12.8 -5.54885 | opp_overlap 1931182 AATACCAATAAAAAA GCGCCC AGA GGGCGC TTTTATCGATAAATG gltA 1932502 - 1931216 - | type II citrate synthase TERM 2367 1931551 - 1931570 + g 74 -4.3 -4.82901 | AGGTTTCACGCATGA CTTTGGC GCGTGG GTCAAAG TTTTTGTAAACACGG TERM 2368 1932698 - 1932683 - H 80 -2.6 -5.42862 | ATATCCTTAAAAAAA CAAAAT TTGC ATTCTG TGATGTTTGTATTTG TERM 2369 1932926 - 1932913 - H 93 -2.3 -6.19302 | overlap 1932914 1932915 ACATAACAAAAAAAA TGCTC AATG GAGCT GAGTGAGCAGAACGT TERM 2370 1932925 - 1932914 - H 70 -5.8 -4.27921 | overlap 1932913 1932915 CATAACAAAAAAAAT GCTC AATG GAGC TGAGTGAGCAGAACG Shewmr4_1631 1932919 - 1933314 + | succinate dehydrogenase subunit C Shewmr4_1632 1933308 - 1933655 + | succinate dehydrogenase subunit D sdhA 1933656 - 1935422 + | succinate dehydrogenase flavoprotein subunit TERM 2371 1935943 - 1935963 + G 71 -6.8 -4.24342 | GTTTATCGGTCCTAG CGGTCTGC TACAC GCATACCG TTTCTTGATCGACAG sdhB 1935434 - 1936141 + | succinate dehydrogenase iron-sulfur subunit TERM 2372 1936185 - 1936214 + F 100 -10.1 -4.65446 | opp_overlap 1936177, overlap 1936177 AATATAGCTCTCGAA GAGTCACTTTCTG GGTA TAGAAGGTGGCTC TTTTGTGTATGTAAT kgd 1936356 - 1939175 + | alpha-ketoglutarate decarboxylase TERM 2373 1940276 - 1940259 - g 73 -9.1 -3.74872 | ATGCACGCCATTAAA GACCGCC CAAT GGCAGTC AATGGTCAGGTTGAA Shewmr4_1636 1939224 - 1940420 + | 2-oxoglutarate dehydrogenase E2 component TERM 2374 1940482 - 1940510 + F 77 -8.2 -3.91352 | gap 1, opp_overlap 1940479, overlap 1940488 GAGTCAGACATACCC TCGTGACTGGCCC CGTG GGGCCAGTTG-GA TTTGATTAGAAGTAT TERM 2375 1940488 - 1940505 + F 95 -12.7 -3.33399 | opp_overlap 1940479, overlap 1940482 GACATACCCTCGTGA CTGGCCC CGTG GGGCCAG TTGGATTTGATTAGA sucC 1940540 - 1941706 + | succinyl-CoA synthetase subunit beta Shewmr4_1638 1941706 - 1942578 + | succinyl-CoA synthetase (ADP-forming) alpha subunit TERM 2376 1942615 - 1942601 - f 100 -12.8 -4.43213 | opp_overlap 1942601 GTTAACACACGAAAA GGCGCC TAA GGCGCC TTTTTTATTGCGTGT TERM 2377 1942601 - 1942615 + F 100 -12.8 -5.49234 | opp_overlap 1942601 GTTAACACACGAAAA GGCGCC TAA GGCGCC TTTTTTATTGCGTGT TERM 2378 1942844 - 1942868 + F 73 -5.6 -4.55661 | TACTTAATTACCACG CGATTGCGGC ACTTA GCTGCGAGCG TATTTTTTTATTGGT TERM 2379 1943024 - 1943003 - g 75 -8.7 -3.93984 | opp_overlap 1943002 1943005 1943010 AAATCGATTTAGAAA GACTCGAGC GTCT GCTGGAGTC ATTACCTGCGAACGC Shewmr4_1639 1942960 - 1943367 + | GreA/GreB family elongation factor TERM 2380 1943346 - 1943366 + F 74 -10.5 -2.62656 | overlap 1943349 GTATCAGCCAGAGCG TAGCGGTGA CTT TCACCGTTA ATTATCGCTGGATTT TERM 2381 1943349 - 1943363 + F 78 -10 -3.45945 | overlap 1943346 TCAGCCAGAGCGTAG CGGTGA CTT TCACCG TTAATTATCGCTGGA Shewmr4_1640 1943415 - 1943912 + | GCN5-related N-acetyltransferase TERM 2382 1943924 - 1943971 + T 79 -10.9 -2.96899 | gap 1, opp_overlap 1943939, overlap 1943939 CTAACTGTGCCCGAG CATTTC-AATAAAAAACCAGCC TAGAT GGCTGGTTTTTTATTAGGCGTG TCTGGTTAATTGAGA TERM 2383 1943939 - 1943955 + T 100 -9.4 -5.45652 | opp_overlap 1943939, overlap 1943924 CATTTCAATAAAAAA CCAGCC TAGAT GGCTGG TTTTTTATTAGGCGT TERM 2384 1943955 - 1943939 - T 100 -9.4 -5.46657 | opp_overlap 1943924 1943939 CATTTCAATAAAAAA CCAGCC TAGAT GGCTGG TTTTTTATTAGGCGT fur 1944440 - 1944009 - | ferric uptake regulator Shewmr4_1642 1944697 - 1945437 + | NAD-dependent deacetylase Shewmr4_1643 1945440 - 1945904 + | hypothetical protein Shewmr4_1644 1946141 - 1946503 + | hypothetical protein TERM 2385 1946669 - 1946656 - g 76 -8.1 -4.26076 | CTATGTCTACGAAAA CCGTC AACT GACGG TCACTGAGATTAACA TERM 2386 1947319 - 1947340 + G 70 -4.5 -4.72272 | AATGCCACACAGTCA GTTTATCTT CGAT AAGTTAAAC TTTTTGCTCGACGCC Shewmr4_1645 1946630 - 1947577 + | magnesium and cobalt transport protein CorA TERM 2387 1947615 - 1947629 + T 100 -11.4 -5.4756 | opp_overlap 1947615 TGAGATACCCCAAAA CCGGAG AGA CTCCGG TTTTTTATTGGACTT TERM 2388 1947629 - 1947615 - T 100 -11.4 -4.18401 | opp_overlap 1947615 TGAGATACCCCAAAA CCGGAG AGA CTCCGG TTTTTTATTGGACTT TERM 2389 1947708 - 1947689 - T 100 -13.6 -5.06816 | opp_overlap 1947689 ATCGCCCAATAAAAA GGCAGGGA TAAA TCCCTGCC TTTTAGATCATTGGC TERM 2390 1947689 - 1947708 + T 100 -13.6 -4.23892 | opp_overlap 1947689 ATCGCCCAATAAAAA GGCAGGGA TAAA TCCCTGCC TTTTAGATCATTGGC Shewmr4_1646 1947941 - 1947735 - | cold-shock DNA-binding protein family protein Shewmr4_1647 1948135 - 1948443 + | ATP-dependent Clp protease adaptor protein ClpS TERM 2391 1948738 - 1948714 - g 77 -9.4 -3.99592 | gap 1, opp_overlap 1948718 1948718, overlap 1948718 ATGGATGATGATAAA GAAACCC-AGC CGAC GCTTGGGTTTC AACGGGTGCTGCAAC TERM 2392 1948733 - 1948718 - g 70 -4.6 -4.59944 | opp_overlap 1948718 1948718, overlap 1948714 ATGATGATAAAGAAA CCCAGC CGAC GCTTGG GTTTCAACGGGTGCT Shewmr4_1648 1948486 - 1950753 + | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 2393 1950800 - 1950771 - T 95 -12.3 -3.29324 | opp_overlap 1950771 1950777, overlap 1950777 TCTAGCTAAACCCAA TAAAAATGGCTGC AATT GCAGCCATTTTTC TGATCTTACGCCAAC TERM 2394 1950771 - 1950800 + T 89 -12.3 -2.73875 | opp_overlap 1950771 1950777, overlap 1950777 TCTAGCTAAACCCAA TAAAAATGGCTGC AATT GCAGCCATTTTTC TGATCTTACGCCAAC TERM 2395 1950777 - 1950794 + T 100 -11.3 -4.98436 | opp_overlap 1950777 1950771, overlap 1950771 TAAACCCAATAAAAA TGGCTGC AATT GCAGCCA TTTTTCTGATCTTAC TERM 2396 1950794 - 1950777 - T 100 -11.3 -5.16151 | opp_overlap 1950771 1950777, overlap 1950771 TAAACCCAATAAAAA TGGCTGC AATT GCAGCCA TTTTTCTGATCTTAC TERM 2397 1950837 - 1950823 - T 100 -12.8 -5.80364 | opp_overlap 1950823 ACGCCAACAAAAAAA CCCGGC CTC GCCGGG TTTTTCAACTAAAGG TERM 2398 1950823 - 1950837 + T 100 -12.8 -4.62069 | opp_overlap 1950823 ACGCCAACAAAAAAA CCCGGC CTC GCCGGG TTTTTCAACTAAAGG Shewmr4_1649 1951077 - 1950859 - | translation initiation factor 1 Shewmr4_1650 1951876 - 1951160 - | arginyl-tRNA-protein transferase aat 1952576 - 1951866 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 2399 1952064 - 1952076 + g 70 -9.1 -3.52204 | CAATAACAACATGGC CGCCT TTG AGGCG TTGGTTTCACGGTGG Shewmr4_1652 1952631 - 1953101 + | 17 kDa surface antigen Shewmr4_1653 1953162 - 1953914 + | hypothetical protein TERM 2400 1953964 - 1953948 - T 100 -13.7 -4.87133 | opp_overlap 1953948 ATCTTTCAAACAAAA GGCGAGC CAT GCTCGCC TTTGTCGTATGTAAA TERM 2401 1953948 - 1953964 + T 100 -13.7 -4.04318 | opp_overlap 1953948 ATCTTTCAAACAAAA GGCGAGC CAT GCTCGCC TTTGTCGTATGTAAA Shewmr4_1654 1954948 - 1953992 - | auxin efflux carrier TERM 2402 1954412 - 1954394 - G 79 -7.4 -4.57353 | overlap 1954397 CGCCAGCAGATAAAA CAGCATGC CGA GCATGATG GCAATGATCAGCGGG TERM 2403 1955094 - 1955124 + r 90 -11.2 -3.92542 | opp_overlap 1955097 1955100, overlap 1955097 1955100 GATGTTTTTACCAAC AAATAAGGCCGCAT TAA ATGCGGCCTTATGC TTATTTACCAGTAGC TERM 2404 1955121 - 1955097 - R 100 -17.3 -4.24342 | opp_overlap 1955094 1955097 1955100, overlap 1955100 GTTTTTACCAACAAA TAAGGCCGCAT TAA ATGCGGCCTTA TGCTTATTTACCAGT TERM 2405 1955097 - 1955121 + r 100 -17.3 -3.02639 | opp_overlap 1955097 1955100, overlap 1955094 1955100 GTTTTTACCAACAAA TAAGGCCGCAT TAA ATGCGGCCTTA TGCTTATTTACCAGT TERM 2406 1955100 - 1955118 + r 100 -14.6 -3.65135 | opp_overlap 1955100 1955097, overlap 1955097 1955094 TTTACCAACAAATAA GGCCGCAT TAA ATGCGGCC TTATGCTTATTTACC TERM 2407 1955118 - 1955100 - R 100 -14.6 -4.24413 | opp_overlap 1955097 1955094 1955100, overlap 1955097 TTTACCAACAAATAA GGCCGCAT TAA ATGCGGCC TTATGCTTATTTACC metG 1957191 - 1955161 - | methionyl-tRNA synthetase Shewmr4_1656 1957352 - 1958467 + | ATP-binding Mrp/Nbp35 family protein Shewmr4_1657 1958479 - 1959117 + | uridine kinase dcd 1959147 - 1959728 + | deoxycytidine triphosphate deaminase Shewmr4_1659 1959734 - 1960543 + | aminodeoxychorismate lyase apoprotein Shewmr4_1660 1960540 - 1961550 + | aminodeoxychorismate lyase TERM 2408 1961666 - 1961642 - g 74 -7.2 -4.1899 | gap 1 CGATTTTATTGAAAA GCATACTGGGC TCGC ACCC-GTATGC ACCCGTGAGCCAGGC Shewmr4_1661 1961547 - 1962176 + | thymidylate kinase TERM 2409 1962201 - 1962232 + G 86 -9.4 -4.58283 | gap 1, opp_overlap 1962201 1962202, overlap 1962201 1962202 GATTTGATGTATTAA C-CCTGCCTTGGCTC GAT GCGCCAAGACAGGCG TTTTTAACCCAGTTA TERM 2410 1962231 - 1962201 - g 79 -11.8 -3.18582 | opp_overlap 1962201 1962201 1962202, overlap 1962202 GATTTGATGTATTAA CCCTGCCTTGGCTC GAT GCGCCAAGACAGGC GTTTTTAACCCAGTT TERM 2411 1962201 - 1962231 + G 72 -9.6 -3.34488 | opp_overlap 1962201 1962202, overlap 1962201 1962202 GATTTGATGTATTAA CCCTGCCTTGGCTC GAT GCGCCAAGACAGGC GTTTTTAACCCAGTT TERM 2412 1962202 - 1962230 + G 76 -13.1 -2.60211 | opp_overlap 1962201 1962202, overlap 1962201 1962201 ATTTGATGTATTAAC CCTGCCTTGGCTC GAT GCGCCAAGACAGG CGTTTTTAACCCAGT TERM 2413 1962230 - 1962202 - g 83 -15.3 -2.50935 | opp_overlap 1962202 1962201 1962201, overlap 1962201 ATTTGATGTATTAAC CCTGCCTTGGCTC GAT GCGCCAAGACAGG CGTTTTTAACCCAGT TERM 2414 1962286 - 1962260 - g 74 -4.2 -4.84529 | opp_overlap 1962262, overlap 1962262 TTACAAACTCAAAAA GTCCCCCACGCG CAA CTCGTGGGTATC GATTCCGCCTATGGC Shewmr4_1662 1962170 - 1963126 + | DNA polymerase III, delta prime subunit Shewmr4_1663 1963133 - 1963459 + | type IV pilus biogenesis protein pilZ Shewmr4_1664 1963806 - 1964606 + | TatD family hydrolase TERM 2415 1964764 - 1964736 - T 95 -5.9 -5.63504 | AAGCCCATAAAAAAA GGCCCAAAACGAT TCC AACTGTTTGGGCC TAGGGGAATGGCTCG yebU 1966452 - 1964923 - | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 2416 1966994 - 1967025 + G 100 -7.3 -5.43866 | AGTGTTTTTGTACCG TGCCCAGCAGG-GCG CCGC CGCACCTGC-GGACA TTTTTTTACCCATTC TERM 2417 1967142 - 1967167 + G 86 -5.3 -5.33405 | overlap 1967140 1967132 1967145 GGATATGGCGCAGTG CTGCTGTCGGC ATTA GTCGCCAGTGG TTTTTATTTAATGAC TERM 2418 1967551 - 1967536 - g 70 -9 -3.56092 | opp_overlap 1967529 CTATGATGCTCGAAA CCATGG CGCA CCATGG TGTGGACTCCTTTGC Shewmr4_1666 1966515 - 1967741 + | nucleoside recognition domain-containing protein TERM 2419 1967799 - 1967837 + T 100 -23.5 -3.09516 | opp_overlap 1967799 1967802, overlap 1967802 CGCTTTAGCGGATAA CAATCAGGCGCATTAGA GTTTA TCTAATGCGCCTGATTG TTAAATGATACCGAG TERM 2420 1967837 - 1967799 - T 100 -23.5 -3.32844 | opp_overlap 1967799 1967802, overlap 1967802 CGCTTTAGCGGATAA CAATCAGGCGCATTAGA GTTTA TCTAATGCGCCTGATTG TTAAATGATACCGAG TERM 2421 1967802 - 1967834 + T 100 -19.4 -3.69395 | opp_overlap 1967799 1967802, overlap 1967799 TTTAGCGGATAACAA TCAGGCGCATTAGA GTTTA TCTAATGCGCCTGA TTGTTAAATGATACC TERM 2422 1967834 - 1967802 - T 100 -19.4 -3.80733 | opp_overlap 1967802 1967799, overlap 1967799 TTTAGCGGATAACAA TCAGGCGCATTAGA GTTTA TCTAATGCGCCTGA TTGTTAAATGATACC TERM 2423 1967911 - 1967936 + T 70 -9.7 -2.50994 | overlap 1967900 1967924 1967925 CAGTGCCTCGCTTCA GGGCTTTAGCT ACTG GGCTGGAGCCC ATTCCTGCCATTCGC Shewmr4_1667 1970556 - 1967920 - | hypothetical protein TERM 2424 1969452 - 1969442 - G 71 -6.8 -4.13767 | TCTTGCAGGGCAAAA CTGC TTG GCAG CGCGGTATTGGCATT TERM 2425 1969495 - 1969516 + g 76 -5.7 -4.72272 | opp_overlap 1969488 1969484 GAAATTAATCACGCT TCCCGTGAG TAAA CGCTCGGGA TTTTTGATACCAGAG Shewmr4_1668 1971160 - 1970543 - | paraquat-inducible protein A Shewmr4_1669 1971798 - 1971163 - | paraquat-inducible protein A TERM 2426 1972289 - 1972275 - g 80 -2.1 -5.47821 | gap 1, overlap 1972288 ATGCAGCGAAAAAAA CG-CCT AAGA AGGACG ACGCTGCCGAATAAT Shewmr4_1670 1972004 - 1972303 + | YebG family protein Shewmr4_1671 1972319 - 1972777 + | putative GAF sensor protein TERM 2427 1972880 - 1972851 - f 71 -8.7 -3.36878 | gap 1, opp_overlap 1972824 1972848, overlap 1972878 CGCATGCACTGATAA GGCTTATTTTGAGC ACA GC-CGAAATAAGCC TGATAGGTTCAGCCG Shewmr4_1672 1973053 - 1973697 + | putative solute/DNA competence effector Shewmr4_1673 1973726 - 1975777 + | carboxy-terminal protease TERM 2428 1975811 - 1975825 + F 100 -9.2 -5.38549 | opp_overlap 1975811 TACCGTATCTTAAAA CGCGCT TAT GGCGCG TTTTTCTTATTTAGA TERM 2429 1975825 - 1975811 - f 79 -8.5 -4.14243 | opp_overlap 1975811 TACCGTATCTTAAAA CGCGC TTATG GCGCG TTTTTCTTATTTAGA TERM 2430 1976460 - 1976493 + G 75 -8.9 -3.92075 | gap 1 ACAGGATGAGTTTAT CACCCGCAGTCATCGC AAA GTGGT-ACTGCAGGTG TTTGTCGATAAAGGT TERM 2431 1976918 - 1976904 - g 78 -6.4 -4.78764 | overlap 1976905 TAAAGTCATCAAAAA CCAGCA GTT TGCTGA AGACTCAGGCCCAAT TERM 2432 1978263 - 1978246 - g 71 -5.5 -4.44448 | opp_overlap 1978251, overlap 1978248 1978251 ATCAGCTTAAATAAA CTCAACC CGCA GGTTGCG GCGCGTATGGTGACG Shewmr4_1674 1975861 - 1978410 + | aminopeptidase N TERM 2433 1978417 - 1978441 + F 100 -14.3 -3.61894 | opp_overlap 1978418, overlap 1978418 1978420 GCACAGTAGCTATGA AGAGGGCAGCA TTA TGCTGCCCTCA TTCTTCCAAGCAGTT TERM 2434 1978418 - 1978440 + F 100 -17.8 -2.76815 | opp_overlap 1978418, overlap 1978417 1978420 CACAGTAGCTATGAA GAGGGCAGCA TTA TGCTGCCCTC ATTCTTCCAAGCAGT TERM 2435 1978440 - 1978418 - f 100 -17.8 -3.1994 | opp_overlap 1978418 1978417 1978420 CACAGTAGCTATGAA GAGGGCAGCA TTA TGCTGCCCTC ATTCTTCCAAGCAGT TERM 2436 1978420 - 1978438 + F 100 -14.6 -2.93073 | opp_overlap 1978418, overlap 1978418 1978417 CAGTAGCTATGAAGA GGGCAGCA TTA TGCTGCCC TCATTCTTCCAAGCA Shewmr4_1675 1978721 - 1978939 + | hypothetical protein TERM 2437 1979303 - 1979282 - g 82 -7.5 -4.68645 | opp_overlap 1979301 GAGCTAAAATGAAAA TTGTTAAAA AAAG TTTTAACAA GTCGGCGCTTGCTTT Shewmr4_1676 1979275 - 1981317 + | hypothetical protein TERM 2438 1981473 - 1981459 - g 70 -3.4 -4.84359 | overlap 1981460 1981461 TTAGGCGCAGAAAAA GCCGGC AAT GCCGAT GGCTCTATTCCCGCT TERM 2439 1981695 - 1981682 - g 71 -5.9 -4.4017 | overlap 1981683 TGAATGTGTACAAAA CGCGC CGCA GCGCA TCAGTGCCACAATTT TERM 2440 1982332 - 1982305 - g 77 -10 -3.70811 | TCAGATAAGCTGAAA TATGACCAGATT TTAA AACCCGGTCATA TCAATCCTGAGTTTG Shewmr4_1677 1981330 - 1982694 + | hypothetical protein TERM 2441 1982708 - 1982730 + F 71 -9 -3.34192 | opp_overlap 1982711, overlap 1982711 AATCAGCCACGGTAT AAAGGGGCGC TAA GCGCCCCTCA TTAGTTAAGGAAGTT TERM 2442 1982711 - 1982727 + F 100 -15.1 -2.84098 | opp_overlap 1982711, overlap 1982708 CAGCCACGGTATAAA GGGGCGC TAA GCGCCCC TCATTAGTTAAGGAA TERM 2443 1982727 - 1982711 - f 100 -15.1 -3.89822 | opp_overlap 1982711 1982708 CAGCCACGGTATAAA GGGGCGC TAA GCGCCCC TCATTAGTTAAGGAA TERM 2444 1982780 - 1982795 + G 72 -4 -4.87892 | overlap 1982775 TTCAATGCGCCGCTG CAATCA GTGT TGGTTG TTTATTTTCTTCCCC Shewmr4_1678 1982749 - 1983759 + | BNR repeat-containing protein TERM 2445 1983923 - 1983909 - g 70 -2.8 -4.88407 | CTAGCCAATTAAAAA TGGATG CGG CATTCA TTAAAAATATTCCGC TERM 2446 1983989 - 1983971 - g 77 -10.4 -3.62864 | CAAACCTACCTCAAA CACCAAAA AGA TTTTGGTG GGGCGAATAGCATTA TERM 2447 1984749 - 1984761 + G 79 -9.1 -4.24342 | AGGCGGCTTCGGCTT CTGCG TTT CGCAG TTTATTGGTGCCAGG TERM 2448 1985712 - 1985702 - g 74 -6.8 -4.30978 | opp_overlap 1985711 TTTAAGTCATTAAAA GCGA CAG TCGC GGTGATTATTCCGCT Shewmr4_1679 1983791 - 1986106 + | hypothetical protein TERM 2449 1986112 - 1986142 + F 75 -9 -3.70902 | opp_overlap 1986114 1986117, overlap 1986113 1986117 GGCTAAGTAGTTACA AACAATGGGGAGTT TTT GACTCCCCATTGCC TTTGAATATAAACGC TERM 2450 1986113 - 1986141 + F 89 -12.5 -2.82327 | opp_overlap 1986114 1986117, overlap 1986112 1986117 GCTAAGTAGTTACAA ACAATGGGGAGTT TTT GACTCCCCATTGC CTTTGAATATAAACG TERM 2451 1986140 - 1986114 - f 100 -15.3 -3.95153 | opp_overlap 1986113 1986112 1986117, overlap 1986117 CTAAGTAGTTACAAA CAATGGGGAGT TTTTG ACTCCCCATTG CCTTTGAATATAAAC TERM 2452 1986137 - 1986117 - f 93 -11.2 -4.09519 | opp_overlap 1986117 1986113 1986112, overlap 1986114 AGTAGTTACAAACAA TGGGGAGT TTTTG ACTCCCCA TTGCCTTTGAATATA TERM 2453 1986117 - 1986137 + F 89 -11.9 -3.30038 | opp_overlap 1986114 1986117, overlap 1986113 1986112 AGTAGTTACAAACAA TGGGGAGTT TTT GACTCCCCA TTGCCTTTGAATATA TERM 2454 1986588 - 1986577 - g 87 -7.2 -4.9448 | overlap 1986585 ATGCACTAAACAAAA CCCC GAAA GGGG AGACTCACCTCAGAG TERM 2455 1989401 - 1989378 - g 82 -7.4 -4.614 | opp_overlap 1989368, overlap 1989371 1989380 TCTAAGCACACAAAA CTTGTGGCTG CGTT CAACCACATG CATATCTTTATCGAC Shewmr4_1680 1986372 - 1991216 + | glutamate dehydrogenase (NAD) TERM 2456 1991236 - 1991255 + F 100 -12.8 -5.47218 | opp_overlap 1991230 1991236 TTATAACAATCAGAA GCCCTGGC GATC GCCGGGGC TTTTTTTAGGTCGAG TERM 2457 1991255 - 1991236 - f 82 -10.6 -3.63276 | opp_overlap 1991236, overlap 1991230 TTATAACAATCAGAA GCCCTGGC GATC GCCGGGGC TTTTTTTAGGTCGAG Shewmr4_1681 1991279 - 1992298 + | dihydroorotate dehydrogenase 2 TERM 2458 1992341 - 1992382 + F 89 -12.6 -2.75891 | opp_overlap 1992360 1992367, overlap 1992338 AATTACGATCATTTA TCTTAGCTGCGATCTA AAACGATCAA TAGATCGCAGTTAAGA TCCTTAAATAGATCT TERM 2459 1992373 - 1992360 - f 71 -6.7 -4.18197 | opp_overlap 1992341 1992338, overlap 1992367 AGCTGCGATCTAAAA CGATC AATA GATCG CAGTTAAGATCCTTA Shewmr4_1682 1992499 - 1993032 + | hypothetical protein TERM 2460 1993031 - 1993064 + T 73 -6 -4.43208 | opp_overlap 1993034, overlap 1993034 ATGTCGTCGCAGCCT AAATGACGGTCTAG CCAAGT CTTGGCCGTCATTA TTTATTTCGAGCTAT TERM 2461 1993034 - 1993061 + T 79 -7.7 -4.32678 | opp_overlap 1993034, overlap 1993031 TCGTCGCAGCCTAAA TGACGGTCTAG CCAAGT CTTGGCCGTCA TTATTTATTTCGAGC TERM 2462 1993244 - 1993256 + T 80 -9.1 -4.07568 | GGCTTTAGTGATACT CGTCG TCC CGACG TTTTGAACCCAAGAA TERM 2463 1993500 - 1993463 - T 100 -12.2 -4.20783 | opp_overlap 1993461 1993459 ACTTTAGTGAATAAA GGGCTTTGTTTACCTA TATCGC TAAGGAAACAAAGCCC TGTCAATTTCAGTGA Shewmr4_1683 1996141 - 1993541 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 2464 1993713 - 1993733 + g 73 -9 -3.74526 | opp_overlap 1993715 CCCGCTTCTTGGATA GATGCTGG AATGC CCAGCGTC TTCTTGAGTTGCTCG TERM 2465 1993737 - 1993749 + g 74 -4.1 -5.01732 | overlap 1993742 ATGCCCAGCGTCTTC TTGAG TTG CTCGA TTTTTTCCAGCAATT TERM 2466 1995749 - 1995739 - G 70 -2.6 -5.0538 | GGTGAGGGGAAAAAA TAAT CGC ATTA CGGGTTTTAAGACTG TERM 2467 1995926 - 1995952 + g 74 -11 -3.05463 | opp_overlap 1995917 1995932, overlap 1995928 1995932 GTAAATGTACTCGGA GGCAAAGTGGTT TTT AATCACTTTGTC TTCAATCACCCCCAT TERM 2468 1996160 - 1996188 + H 76 -7.6 -4.11183 | opp_overlap 1996150 1996160 TAAGACTCCTAAAAA GATTTAGGGAAT GCGCG ATTCGCTAAATC TTCTTTATGGTGAAA TERM 2469 1996188 - 1996160 - H 86 -7.6 -4.62302 | opp_overlap 1996160, overlap 1996150 TAAGACTCCTAAAAA GATTTAGGGAAT GCGCG ATTCGCTAAATC TTCTTTATGGTGAAA TERM 2470 1996472 - 1996482 + G 84 -2.6 -5.5353 | ACTTGGAGTTAACAC TTTA CGT TAAA TTTTTTCTTGGTCTG Shewmr4_1684 1996459 - 1997091 + | hypothetical protein TERM 2471 1997102 - 1997126 + F 93 -10 -4.25848 | overlap 1997105 GCTAATTGAGCTTAT CGGGGGAGGA GTATG TCCTCCCTTG TTTTGGTGGCGCATT TERM 2472 1997105 - 1997123 + F 100 -10.3 -4.25256 | overlap 1997102 AATTGAGCTTATCGG GGGAGGA GTATG TCCTCCC TTGTTTTGGTGGCGC Shewmr4_1685 1997345 - 1999339 + | methyl-accepting chemotaxis sensory transducer TERM 2473 1999645 - 1999660 + F 100 -9 -5.57396 | opp_overlap 1999645 AAATTCAAGTTTAAA GACGTC CTAG GACGTC TTTTTTCTTACTTGT TERM 2474 1999660 - 1999645 - f 75 -9 -3.68265 | opp_overlap 1999645 AAATTCAAGTTTAAA GACGTC CTAG GACGTC TTTTTTCTTACTTGT TERM 2475 1999907 - 1999954 + F 88 -9.4 -4.40221 | opp_overlap 1999907 1999911, overlap 1999938 TTTATTCAGTGATAA GTAATGCTTGATTTTCGAGTGA AAAA TGATGCCAAAATCAAGCATTAC TTTTGGGTTTAATTT TERM 2476 2000217 - 2000205 - g 77 -9.1 -4.0371 | GAGGCGCGAGATAAA GCGCT AGA AGCGC GAAAAAACTTGGCCG Shewmr4_1686 1999986 - 2001221 + | phage integrase family protein TERM 2477 2002377 - 2002326 - f 86 -11.8 -2.94333 | opp_overlap 2002334 2002336, overlap 2002323 TGCTAAAATTAATTA CCACGTCACATGCTATTTCTGCTA TTAG TAGCAGAAATAGCATGTATATTGA AGGTGAGTTCGATGC TERM 2478 2002334 - 2002369 + F 100 -20.8 -3.07895 | opp_overlap 2002326 2002323, overlap 2002336 TTAATTACCACGTCA CATGCTATTTCTGCTA TTAG TAGCAGAAATAGCATG TATATTGAAGGTGAG TERM 2479 2002336 - 2002367 + F 100 -17.6 -3.09749 | opp_overlap 2002326 2002323, overlap 2002334 AATTACCACGTCACA TGCTATTTCTGCTA TTAG TAGCAGAAATAGCA TGTATATTGAAGGTG Shewmr4_1688 2002389 - 2003429 + | hypothetical protein Shewmr4_1689 2003552 - 2003767 + | phage transcriptional regulator, AlpA TERM 2480 2004836 - 2004822 - g 71 -5.6 -4.57516 | opp_overlap 2004822 ATATTGAAAGTAAAA TGGCTC CTG GTGCCA TTTACGCTAATGCTA Shewmr4_1690 2003786 - 2005285 + | hypothetical protein Shewmr4_1691 2005690 - 2006352 + | hypothetical protein Shewmr4_1692 2006809 - 2006525 - | CopG family transcriptional regulator TERM 2481 2007018 - 2007041 + r 83 -9.6 -3.95219 | gap 1, opp_overlap 2007018 CAATAGGGATAAAAA CGATAGCGGCG GCA TGCCGCT-TCG TTTATAGGGTTTGGC TERM 2482 2007041 - 2007018 - R 100 -8.9 -4.91459 | gap 1, opp_overlap 2007018 CAATAGGGATAAAAA CGATAGCGGC GGCAT GCCGCT-TCG TTTATAGGGTTTGGC Shewmr4_1693 2007817 - 2007095 - | retinol acyltransferase domain-containing protein Shewmr4_1694 2008544 - 2007906 - | phage integrase family protein TERM 2483 2008547 - 2008579 + r 71 -9.2 -3.05816 | opp_overlap 2008504 ATCGGGCCTGCATTG CTTGGTTCCCAAAA TACCT TTGTGGGCACCAAG TTCAGTCGGCGCTGA Shewmr4_1695 2008994 - 2008581 - | hypothetical protein TERM 2484 2009040 - 2009015 - R 100 -11.2 -5.46706 | gap 1 ACTCCAAAACAAAAA GCCCGCGAACG ACAGG CGTT-GCGGGC AGGGTAGGTTGTTAA Shewmr4_1696 2009597 - 2009184 - | hypothetical protein TERM 2485 2009673 - 2009619 - R 100 -12.3 -4.65895 | gap 1, opp_overlap 2009618 2009628 2009632, overlap 2009628 2009632 TTCCTTATTTAAAAA CGGGCATA-AGCAAGAGCTAAGGCGC AGTT ACGCCTTAGCTCTTGCTGTCTATGCG GTTTGAAAACAGTTG TERM 2486 2009663 - 2009628 - R 100 -22.8 -3.37589 | opp_overlap 2009628 2009618 2009632, overlap 2009619 2009632 TAAAAACGGGCATAA GCAAGAGCTAAGGCGC AGTT ACGCCTTAGCTCTTGC TGTCTATGCGGTTTG TERM 2487 2009628 - 2009663 + r 100 -22.1 -3.01708 | opp_overlap 2009619 2009628 2009632, overlap 2009618 2009632 TAAAAACGGGCATAA GCAAGAGCTAAGGCG CAGTTA CGCCTTAGCTCTTGC TGTCTATGCGGTTTG TERM 2488 2009659 - 2009632 - R 100 -16.4 -3.4489 | opp_overlap 2009632 2009628 2009618, overlap 2009628 2009619 AACGGGCATAAGCAA GAGCTAAGGCGC AGTT ACGCCTTAGCTC TTGCTGTCTATGCGG TERM 2489 2009632 - 2009659 + r 100 -15.7 -3.35197 | opp_overlap 2009628 2009619 2009632, overlap 2009628 2009618 AACGGGCATAAGCAA GAGCTAAGGCG CAGTTA CGCCTTAGCTC TTGCTGTCTATGCGG Shewmr4_1697 2010192 - 2009836 - | hypothetical protein Shewmr4_1698 2010697 - 2010335 - | hypothetical protein Shewmr4_1699 2011232 - 2010738 - | DNA repair protein RadC Shewmr4_1700 2011355 - 2011549 + | phage transcriptional regulator, AlpA TERM 2490 2011673 - 2011691 + F 73 -6 -4.44797 | opp_overlap 2011671 2011673 GTCTGACGAACAACA GCCAACAT GAC ATGTTTGC TTTTACTATTGATAA TERM 2491 2012520 - 2012549 + G 80 -2.2 -5.47821 | TTTCAGATAAGGTAG GAGTTTTTGAAT TGGCAC ATTCAGGTACTC TTTTTTTGGATGAGT Shewmr4_1701 2011679 - 2013223 + | sigma-54 dependent trancsriptional regulator Shewmr4_1702 2013300 - 2014829 + | ATPase TERM 2492 2015736 - 2015750 + G 73 -2.7 -5.02074 | AATTAGTCGAATGTT GCCTC AAGAA GCGGC TTTTTTGGGGCATCC TERM 2493 2015798 - 2015816 + G 70 -8.9 -3.52073 | overlap 2015784 2015806 GGCATGCCCGACGAG CTGAGCA TGCAT TGCTCAG TTATGCTGTTGAAGG Shewmr4_1703 2014822 - 2016405 + | von Willebrand factor, type A Shewmr4_1704 2016419 - 2016952 + | hypothetical protein TERM 2494 2017158 - 2017144 - f 73 -3.6 -5.00616 | GCTTTCGTGAAAAAA TACTCA TTG TAAGTA TTCAATGCACTGATT Shewmr4_1705 2017257 - 2017937 + | hypothetical protein Shewmr4_1706 2018034 - 2018801 + | hypothetical protein Shewmr4_1707 2018806 - 2019348 + | hypothetical protein TERM 2495 2020870 - 2020883 + G 70 -2.3 -5.01732 | ATCAACCATGGTATC GCCTC AACG GAAGC TTTTTTGGCAGACTT TERM 2496 2020940 - 2020926 - g 70 -10 -3.20991 | opp_overlap 2020939 TTTAAGTGAAGGTAA GCACGA ACT TCGTGC CCGGCTGCCAGGCTT TERM 2497 2021928 - 2021902 - g 76 -2.8 -5.07486 | overlap 2021903 GATGGCCAAGAAAAA CCGCTCGATGCC AAA AGCCTTGAGCGC GCCAAAGTCGGCCAA Shewmr4_1708 2019364 - 2022837 + | hypothetical protein TERM 2498 2022925 - 2022875 - f 80 -2.7 -5.42862 | gap 2, overlap 2022863 2022876 2022887 2022890 AGAGCCTTAAAAAAA GCCGCGTTAATATCAGCCTTGCCCA AGT TGGGCAAGGCTCAC-TCAA-ATGAC AGTTAGATGAGATAG TERM 2499 2022915 - 2022887 - f 100 -16.1 -3.0264 | overlap 2022875 2022876 2022890 AAAGCCGCGTTAATA TCAGCCTTGCCCA AGT TGGGCAAGGCTCA CTCAAATGACAGTTA TERM 2500 2022912 - 2022890 - f 100 -17.8 -2.73875 | overlap 2022887 2022875 2022876 GCCGCGTTAATATCA GCCTTGCCCA AGT TGGGCAAGGC TCACTCAAATGACAG TERM 2501 2023858 - 2023871 + G 86 -8.1 -4.72986 | overlap 2023864 CCCTCGACCCCTGCT GTGGC TCCG GCCAC TTTTTGGTCGCGCTG TERM 2502 2025819 - 2025830 + G 73 -3 -5.00616 | AACCTAGAGACCTGG CTTA GGGA TAAG TTTTTTGAGCAGCAC TERM 2503 2026256 - 2026236 - g 74 -2.5 -5.14477 | GACATAGGTAAAAAA GGCGC CGGTATTTTGC GCGCC AAGCCCAATATCAAC Shewmr4_1709 2022951 - 2026415 + | hypothetical protein TERM 2504 2026784 - 2026766 - g 76 -4.5 -5.0133 | opp_overlap 2026780, overlap 2026767 GAGCCTGGTAAAAAA CTGCAGG GCATA CCCGCAA AACCCAGATTAGCGT Shewmr4_1710 2026421 - 2028109 + | hypothetical protein Shewmr4_1711 2028096 - 2030135 + | hypothetical protein TERM 2505 2030760 - 2030744 - g 83 -2.9 -5.47218 | GTTCATCGAAAAAAA CATTGAC GGT GACAACG ATAACCCCCACTTTA Shewmr4_1712 2030145 - 2030861 + | zeta toxin family protein Shewmr4_1713 2030873 - 2031034 + | hypothetical protein TERM 2506 2031071 - 2031054 - T 71 -8.4 -3.44051 | opp_overlap 2031054 GTTCTATGACGATAA GCCGCT TTTTAT AGCGGC TTTGTTATTTAAAGA TERM 2507 2031054 - 2031071 + T 87 -8.4 -4.56978 | opp_overlap 2031054 GTTCTATGACGATAA GCCGCT TTTTAT AGCGGC TTTGTTATTTAAAGA Shewmr4_1714 2032929 - 2031076 - | hypothetical protein Shewmr4_1715 2034944 - 2032944 - | hypothetical protein Shewmr4_1716 2035554 - 2038751 + | ATPase-like protein TERM 2508 2038790 - 2038831 + G 70 -10.1 -3.26998 | opp_overlap 2038785, overlap 2038786 TTTTTAAGCATCATT AGCACTGCCATTAGTTCAG CCTG CAGCACTATTGGCAGTGCC TTGAGTTCGTTTGCT TERM 2509 2039202 - 2039218 + G 78 -2.2 -5.28683 | overlap 2039190 CTATCTGGCTTTTAC CTGTGG CAAAC CCAGAG TTTTTTACTGTTAAT Shewmr4_1717 2038769 - 2039461 + | hypothetical protein Shewmr4_1718 2039666 - 2040511 + | hypothetical protein TERM 2510 2040959 - 2040938 - g 71 -5.1 -4.50976 | TCTCACATTAGAAAA TGCGTTAAC GTCG GCTACCGCA AAACTAAAGCAGTTA Shewmr4_1719 2040504 - 2041457 + | hypothetical protein TERM 2511 2041822 - 2041838 + G 83 -3 -5.40474 | overlap 2041823 TAAAATATCCGCCAA TTGTTG CTTAT CAACAG TTTTTTTCCGCGAAT TERM 2512 2042065 - 2042046 - g 71 -7.2 -3.96618 | CCCAATTTCAAACAA TTTGCCCT AAGT AAGGCAAA TCCAGACGTAAATGC TERM 2513 2044121 - 2044110 - g 70 -3 -4.77757 | GGTGAAAAAGTAAAA CTTA TTAA TAAG ATTAGAACAGAAAGC Shewmr4_1720 2041581 - 2044496 + | hypothetical protein TERM 2514 2044535 - 2044570 + F 84 -11.4 -3.14602 | gap 1, overlap 2044534 ATTTCGACATGTTAC GGCTTATTTATGA-CCA AAT TGGATCATATATAAGCC TGTTAATAAGGTAAA TERM 2515 2044726 - 2044737 + G 80 -2.2 -5.38839 | TGAAATGGCGGATGA TGAC GATG GTCG TTTTATTTTTCTCTG Shewmr4_1721 2044607 - 2045251 + | hypothetical protein TERM 2516 2045508 - 2045491 - f 74 -4.9 -4.74767 | opp_overlap 2045491 AGAATTAATATAAAA GCAATTA AATA CAATTGC TTACGTTGTTATTTT TERM 2517 2045732 - 2045698 - f 95 -13 -3.12668 | opp_overlap 2045699 2045703, overlap 2045703 CACCGCCACATTTAA GCAAAGGGAATCAGTA TCT TACTGGTTCCCTTTGT TGTTTCTGGGCAAAA TERM 2518 2045699 - 2045731 + F 100 -18.7 -4.06419 | opp_overlap 2045698 2045703, overlap 2045703 ACCGCCACATTTAAG CAAAGGGAATCAGTA TCT TACTGGTTCCCTTTG TTGTTTCTGGGCAAA TERM 2519 2045703 - 2045727 + F 100 -13.7 -4.63048 | opp_overlap 2045698 2045703, overlap 2045699 CCACATTTAAGCAAA GGGAATCAGTA TCT TACTGGTTCCC TTTGTTGTTTCTGGG TERM 2520 2045727 - 2045703 - f 100 -11.5 -3.94746 | opp_overlap 2045703 2045699, overlap 2045698 CCACATTTAAGCAAA GGGAATCAGTA TCT TACTGGTTCCC TTTGTTGTTTCTGGG Shewmr4_1722 2046005 - 2047732 + | methyltransferase type 12 Shewmr4_1723 2048052 - 2048975 + | IS4 family transposase TERM 2521 2050026 - 2050068 + T 100 -15.1 -3.90112 | gap 1, opp_overlap 2050027, overlap 2050027 TTTTAAGATAAACAA ATGCCGCGCTTAATCGTTTA GGTT TGAACG-TTAAGCGCGGCAA TTTACTTAGGACAAA TERM 2522 2050027 - 2050067 + T 100 -18.6 -2.93853 | gap 1, opp_overlap 2050027, overlap 2050026 TTTAAGATAAACAAA TGCCGCGCTTAATCGTTTA GGTT TGAACG-TTAAGCGCGGCA ATTTACTTAGGACAA TERM 2523 2050067 - 2050027 - T 100 -16.4 -4.68511 | gap 1, opp_overlap 2050027 2050026 TTTAAGATAAACAAA TGCCGCGCTTAATCGTTTA GGTT TGAACG-TTAAGCGCGGCA ATTTACTTAGGACAA TERM 2524 2050136 - 2050156 + T 100 -11.1 -4.36903 | overlap 2050140 TACAATGTTCACAGC GAGGCCGCC TTT GGCGGTTTC TTTGTATTTACTGCG Shewmr4_1725 2051488 - 2050112 - | L-serine ammonia-lyase TERM 2525 2050140 - 2050152 + g 100 -10.5 -4.73432 | overlap 2050136 ATGTTCACAGCGAGG CCGCC TTT GGCGG TTTCTTTGTATTTAC TERM 2526 2051200 - 2051210 + g 73 -5.4 -4.60255 | TGCCGCAGCTGAGGG TGAG GGT CTCA TTTTTAGACACTTGT TERM 2527 2052164 - 2052178 + G 72 -3.5 -4.76041 | CTTGCTAAACGTTGG GCCTG TGAAT TAGGC TTTTTAATGGCTATC Shewmr4_1726 2051873 - 2052901 + | beta-hexosaminidase Shewmr4_1727 2052983 - 2053522 + | hypothetical protein TERM 2528 2053910 - 2053934 + F 100 -8 -5.71983 | gap 1, opp_overlap 2053912, overlap 2053905 GTATGTCGCCCGACA CAGCTAAC-AG CGGT CTCGTTAGCTG TTTTTTTATGCTTGC Shewmr4_1728 2054107 - 2054379 + | acylphosphatase Shewmr4_1729 2055538 - 2054507 - | hypothetical protein TERM 2529 2054652 - 2054674 + g 75 -10.6 -3.36228 | overlap 2054641 2054650 2054648 ATCACTTTAGCTGGG GCAGCGACAG TAC TTGTTGCTGC TGTGTTTATGCTCGC Shewmr4_1730 2059020 - 2055538 - | transcription-repair coupling factor TERM 2530 2056750 - 2056762 + g 82 -10.5 -3.86208 | CAAAATATCCACGTT GGCGC GCA GCGCC TTGATTTTCTCTTTT Shewmr4_1731 2059724 - 2059107 - | hypothetical protein TERM 2531 2059870 - 2059889 + G 72 -3.6 -4.88407 | opp_overlap 2059873, overlap 2059873 TATTGGCGGGCCAGA AAAGCAAA CGCC TTTGCTTC TTTTATTACTTTATT TERM 2532 2059873 - 2059886 + G 71 -5.3 -4.50353 | opp_overlap 2059873, overlap 2059870 TGGCGGGCCAGAAAA GCAAA CGCC TTTGC TTCTTTTATTACTTT TERM 2533 2059905 - 2059918 + G 85 -3.8 -5.42259 | TTTTATTACTTTATT TGCC GTTTCG GGCA TTTTTTTAGGGGTGG TERM 2534 2060737 - 2060726 - g 71 -5.8 -4.36914 | overlap 2060727 TGGTGGTGGATAAAA CCAC CGAC GTGG CGGTACTCAAAACCC Shewmr4_1732 2059819 - 2061051 + | LolC/E family lipoprotein releasing system, transmembrane protein Shewmr4_1733 2061083 - 2061844 + | lipoprotein releasing system, ATP-binding protein Shewmr4_1734 2061841 - 2063091 + | LolC/E family lipoprotein releasing system, transmembrane protein TERM 2535 2063198 - 2063156 - T 100 -13.7 -3.07654 | gap 1, opp_overlap 2063167, overlap 2063167 2063196 AGAATAACGAAAGCA GCA-AACAAAAAGGCCAGTG AATT CACTGGCCTTTTTAATATGC GTTACGCTTGGAAGG TERM 2536 2063186 - 2063167 - T 100 -13.6 -5.34309 | opp_overlap 2063167, overlap 2063156 AGCAGCAAACAAAAA GGCCAGTG AATT CACTGGCC TTTTTAATATGCGTT TERM 2537 2063167 - 2063186 + T 100 -13.6 -4.82154 | opp_overlap 2063167 2063156 AGCAGCAAACAAAAA GGCCAGTG AATT CACTGGCC TTTTTAATATGCGTT Shewmr4_1735 2064023 - 2063220 - | inositol-phosphate phosphatase Shewmr4_1736 2064178 - 2064903 + | RNA methyltransferase TERM 2538 2064921 - 2064901 - f 85 -4 -5.47159 | overlap 2064903 GGTAACAAACAAAAA TAGCCAAA GCACA TTTGGCAA ATAACGCTAATCGCG TERM 2539 2064919 - 2064903 - f 74 -6.6 -4.35561 | overlap 2064901 TAACAAACAAAAATA GCCAAA GCACA TTTGGC AAATAACGCTAATCG TERM 2540 2065008 - 2065020 + G 80 -10.5 -3.67517 | opp_overlap 2064996 TCACCGTGATCCCGC GGCGC GCG GCGCC TTTGAGATCTTGGTC Shewmr4_1737 2064949 - 2065770 + | serine O-acetyltransferase TERM 2541 2065791 - 2065813 + F 80 -10.6 -3.5393 | GCGTGTGGCGTAGTG GCGTGTAGAT ATA ATCCACACGC TTTGCCACCGATGAT Shewmr4_1738 2066120 - 2066581 + | BadM/Rrf2 family transcriptional regulator Shewmr4_1739 2066660 - 2067874 + | cysteine desulfurase IscS TERM 2542 2067947 - 2067967 + G 74 -9.7 -3.53012 | opp_overlap 2067950, overlap 2067950 2067962 GATAGATCATTATGA GAACCCACG TAA CGTTGGTTC TTTCGACAAGAACGA Shewmr4_1740 2067912 - 2068295 + | scaffold protein Shewmr4_1741 2068310 - 2068633 + | iron-sulfur cluster assembly protein IscA TERM 2543 2068930 - 2068914 - g 70 -9.5 -3.28866 | opp_overlap 2068902, overlap 2068912 2068910 CCACAGTGAAAGATA CTGCATT TTT AATGCAG CAGATGGAATGGCGT hscB 2068649 - 2069173 + | co-chaperone HscB hscA 2069241 - 2071103 + | chaperone protein HscA Shewmr4_1744 2071112 - 2071447 + | ferredoxin, 2Fe-2S type, ISC system TERM 2544 2071469 - 2071501 + F 100 -15.8 -3.28712 | opp_overlap 2071477, overlap 2071477 CGATGCGATGATATC GTCAAAAACCAGTC CATGT GACTGGTTTTTGGC TTCTGGCGCCCAGCA TERM 2545 2071493 - 2071477 - f 86 -8 -4.61231 | opp_overlap 2071477 2071469 TGATATCGTCAAAAA CCAGTC CATGT GACTGG TTTTTGGCTTCTGGC TERM 2546 2071477 - 2071493 + F 91 -8 -4.78149 | opp_overlap 2071477, overlap 2071469 TGATATCGTCAAAAA CCAGTC CATGT GACTGG TTTTTGGCTTCTGGC TERM 2547 2071818 - 2071838 + G 71 -11.1 -2.77043 | overlap 2071817 TTCTATTACTTTTTA TGGCTCAGC TGT GCTGCGCCA GTTTGAGATGATGGG Shewmr4_1745 2071603 - 2072502 + | SSU ribosomal protein S6P modification protein Shewmr4_1746 2072571 - 2072768 + | hypothetical protein TERM 2548 2072783 - 2072769 - f 88 -10 -4.22375 | opp_overlap 2072773 2072774 2072779, overlap 2072772 ATTGAAGAGAAATAA CCATCG CCC CGATGG GGCATCTTGTCCCGC TERM 2549 2072774 - 2072786 + F 73 -10.5 -2.52623 | opp_overlap 2072769 2072772, overlap 2072773 2072779 AGAGAAATAACCATC GCCCC GAT GGGGC ATCTTGTCCCGCAAA TERM 2550 2072813 - 2072828 + F 78 -9 -3.79747 | opp_overlap 2072813 CAAAAACCGTACTAA CGTGAC AATT GTCACG TTTAGTGATCCCTAA TERM 2551 2072837 - 2072850 + F 74 -4.5 -4.86033 | overlap 2072837 2072838 TGTCACGTTTAGTGA TCCCT AAAA GGGGA TTTTTGTAGGAGTTT TERM 2552 2073145 - 2073160 + F 76 -7.6 -4.10731 | ATAACCCCTGAGTCT TTGGCA AATA TGCCAA TTTAGTTGTGTTGTT TERM 2553 2073183 - 2073212 + F 100 -13.5 -5.00895 | GTGTTGTTATCCTTT CGCCAGTCCAGTC GAAT GACAGGTCTGGCG TTTTTGTGTGATCAA Shewmr4_1747 2073354 - 2073785 + | nucleoside diphosphate kinase TERM 2554 2073808 - 2073823 + F 100 -10.4 -5.4505 | opp_overlap 2073807 2073808 GTGAGACCGAAGAAG GGAGCC TAAG GGCTCC TTTTTTATTGGCGGC TERM 2555 2073823 - 2073808 - f 75 -10.4 -2.82142 | opp_overlap 2073808, overlap 2073807 GTGAGACCGAAGAAG GGAGCC TAAG GGCTCC TTTTTTATTGGCGGC Shewmr4_1748 2074099 - 2074542 + | heat shock protein Hsp20 TERM 2556 2074584 - 2074566 - T 100 -11.7 -4.09117 | opp_overlap 2074566 CGCACGGATAAAGAA GGGGAGC TTAAT GCTCCCC TTATTGTTATCCCAC TERM 2557 2074566 - 2074584 + T 100 -11.7 -4.02817 | opp_overlap 2074566 CGCACGGATAAAGAA GGGGAGC TTAAT GCTCCCC TTATTGTTATCCCAC Shewmr4_1749 2075168 - 2074674 - | acetolactate synthase 3 regulatory subunit Shewmr4_1750 2076886 - 2075168 - | acetolactate synthase 3 catalytic subunit TERM 2558 2076113 - 2076128 + g 70 -3.2 -4.87665 | ACGACCGTGCATCCC CAGCAT TCCT AAGCTG TTTTTATGGGTGCCA TERM 2559 2077231 - 2077246 + r 100 -10.4 -4.42062 | opp_overlap 2077231 TATTTCATATGAAAA CGGCAC CTAA GTGCCG TTTATTTAGAAAGTG TERM 2560 2077246 - 2077231 - R 100 -10.4 -4.35116 | opp_overlap 2077231 TATTTCATATGAAAA CGGCAC CTAA GTGCCG TTTATTTAGAAAGTG Shewmr4_1751 2078560 - 2077337 - | Bcr/CflA subfamily drug resistance transporter TERM 2561 2077438 - 2077425 - G 72 -8.1 -3.89881 | opp_overlap 2077425 2077424, overlap 2077415 ATTAATGCCGAGAAA GGCAC TGCG GTGCC ATTATAAAACAGCGC TERM 2562 2078289 - 2078279 - G 71 -6.8 -4.23674 | GCTGACTAACATAAA GCCT GAG AGGC CCATTATTACCAAAG TERM 2563 2079966 - 2079945 - g 74 -6.5 -4.39287 | overlap 2079934 2079946 2079949 CCAAGGACATTAAAA TCAATGGCC CTAT GGCCACTGT CGCGCAGGACTTAGA TERM 2564 2079965 - 2079946 - g 70 -10 -3.22849 | overlap 2079934 2079945 2079949 CAAGGACATTAAAAT CAATGGCC CTAT GGCCACTG TCGCGCAGGACTTAG TERM 2565 2079962 - 2079949 - g 70 -8.1 -3.73858 | overlap 2079934 2079946 2079945 GGACATTAAAATCAA TGGCC CTAT GGCCA CTGTCGCGCAGGACT TERM 2566 2080580 - 2080568 - g 73 -3.3 -4.91657 | overlap 2080569 AATGAAGAAAACAAA GGCGA TAG TCGCA GTGACGATAAAGGCC Shewmr4_1752 2079053 - 2080927 + | alkaline phosphatase TERM 2567 2081022 - 2081002 - T 100 -13.3 -4.21768 | opp_overlap 2081002 TAAGCAAGCTTAAAA CGCCAGAGC ATC ACTCTGGCG TTTCTTTTTGGCCGC TERM 2568 2081002 - 2081022 + T 100 -12.6 -4.85782 | opp_overlap 2081002 TAAGCAAGCTTAAAA CGCCAGAG CATCA CTCTGGCG TTTCTTTTTGGCCGC Shewmr4_1753 2082418 - 2081060 - | GntR family transcriptional regulator Shewmr4_1754 2082510 - 2083136 + | lysine exporter protein LysE/YggA Shewmr4_1755 2083330 - 2085087 + | sulphate transporter TERM 2569 2085140 - 2085160 + T 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCAC Shewmr4_1756 2085940 - 2085137 - | integrase catalytic subunit TERM 2570 2085646 - 2085696 + g 70 -2.6 -5.01546 | gap 1, opp_overlap 2085663 CATCATGCAGTCCTT CCTCTTTCAGCAGAT-TAGGATG CTTCTT CATCCAGTGTTTGCTGAACGTGG TTTTTGTGTAGCTTT TERM 2571 2085957 - 2085984 + r 71 -4 -4.8622 | opp_overlap 2085942, overlap 2085942 2085942 CCCGCAGCACGACAT GCGGCAGCGAGG TTTA TTTCGCCGTTGC TTTTTGCTTGCCAGA Shewmr4_1757 2086365 - 2085970 - | transposase TERM 2572 2086439 - 2086422 - R 88 -9.8 -4.09215 | opp_overlap 2086422 GAGAGTAACGACAAA GCGCGG CATGGC CCGCGC TTTTTTATCTCTGTC TERM 2573 2086422 - 2086439 + r 100 -9.8 -5.4492 | opp_overlap 2086422 GAGAGTAACGACAAA GCGCGG CATGGC CCGCGC TTTTTTATCTCTGTC TERM 2574 2086485 - 2086505 + r 89 -11.3 -3.52522 | overlap 2086482 2086479 GTGATTTTAGAGCCA GCAGTTATT TAA AATAACTGC TTAGTCTTTCTGTAA Shewmr4_1758 2086730 - 2086506 - | hypothetical protein TERM 2575 2086876 - 2086914 + r 70 -3.8 -4.77896 | opp_overlap 2086885, overlap 2086879 TATAGACGTTCCTAA CAAGTAAATTGGCGAGTT CCC AGCTTGCCAGATCACATG TTTTTCCATTGCTTG Shewmr4_1759 2087523 - 2086852 - | glutathione S-transferase domain-containing protein TERM 2576 2088095 - 2088077 - g 86 -6.6 -5.05153 | AGCTGAAAAAAGAAA TCGTCACC ATG GGCGTCGA GGGTATCGATCCGCT Shewmr4_1760 2087794 - 2088786 + | hypothetical protein TERM 2577 2088840 - 2088860 + F 100 -12.6 -5.53991 | opp_overlap 2088832 AACGAATGACCATTA TGGCCCGA CATGT TCGGGCCA TTTTTTTACTAAATG TERM 2578 2088944 - 2088915 - f 74 -8.1 -3.97834 | overlap 2088939 TAACCCTATGATAAA TTTGCCTAAAT AGAATCGA ATTTAGGCAAA GACTGGCTGAGCCAG TERM 2579 2088961 - 2088945 - f 70 -7.9 -3.68619 | overlap 2088939 2088947 TCGAATTTAGGCAAA GACTGGC TGA GCCAGAC CTTGCAGCAGGGACA TERM 2580 2088959 - 2088947 - f 73 -9.1 -3.42283 | overlap 2088945 2088939 GAATTTAGGCAAAGA CTGGC TGA GCCAG ACCTTGCAGCAGGGA Shewmr4_1761 2088981 - 2089445 + | hypothetical protein Shewmr4_1762 2089533 - 2089895 + | hypothetical protein TERM 2581 2090002 - 2089981 - T 93 -12.3 -3.14944 | TACCAGGAGAGCTAA CTGGCAGCA GGGG CGCTGCCAG TGCATGGGGCGTAAG Shewmr4_1763 2090553 - 2090044 - | glucose-specific PTS system component Shewmr4_1764 2092329 - 2090626 - | phosphoenolpyruvate--protein phosphotransferase TERM 2582 2091151 - 2091129 - G 86 -8.4 -4.63527 | opp_overlap 2091132 CGATGAGGGCAAAAA TCTGATCGAG CTC CTCGACCTGA TTCACCATAGGAAAC TERM 2583 2091745 - 2091730 - G 73 -11.8 -2.60763 | overlap 2091729 CTGACAGTTGAGAAT GGCGGG GATC CCCGCC GCACGGGCTAAAATT Shewmr4_1765 2092619 - 2092362 - | HPr family phosphocarrier protein Shewmr4_1766 2093038 - 2092643 - | hypothetical protein TERM 2584 2093182 - 2093151 - R 91 -13.2 -2.7752 | opp_overlap 2093156, overlap 2093143 2093156 GACAGTATTTTAAAC TAAAAGAGGACGTA CTAA TACGTCCTCTTTAA ATGTGAGGGTGGCTT TERM 2585 2093177 - 2093156 - R 100 -13.1 -4.55798 | opp_overlap 2093156, overlap 2093151 TATTTTAAACTAAAA GAGGACGTA CTAA TACGTCCTC TTTAAATGTGAGGGT TERM 2586 2093156 - 2093177 + r 100 -13.1 -3.7108 | opp_overlap 2093156 2093151 TATTTTAAACTAAAA GAGGACGTA CTAA TACGTCCTC TTTAAATGTGAGGGT Shewmr4_1767 2094847 - 2093210 - | methyl-accepting chemotaxis sensory transducer TERM 2587 2094281 - 2094254 - G 74 -4.2 -4.86133 | CACAGATATTAAAAA CATGATAATCAA ATAA TCGATAATCACG CTATCTAGGCTCTCT TERM 2588 2095333 - 2095349 + G 73 -2.9 -4.92239 | opp_overlap 2095335, overlap 2095335 GCCCGTACCCGCTTA AAGCCTG ATT TAGGCTG TTTTTCGATTTTTGA Shewmr4_1768 2095195 - 2095923 + | hypothetical protein TERM 2589 2096317 - 2096303 - g 70 -3.4 -4.89393 | overlap 2096304 CAAAGTCGATAAAAA CGCCAG TAA CCTGCG CACCCAAAACAGCCA Shewmr4_1769 2096145 - 2097185 + | LacI family transcription regulator TERM 2590 2097214 - 2097237 + T 100 -15.4 -5.06816 | opp_overlap 2097214 TGATTTAATCACTAA GCCGAGTGTT AACA AACACTCGGC TTTTTCTTGGACACT TERM 2591 2097237 - 2097214 - T 100 -15.4 -3.2827 | opp_overlap 2097214 TGATTTAATCACTAA GCCGAGTGTT AACA AACACTCGGC TTTTTCTTGGACACT Shewmr4_1770 2097987 - 2097298 - | DNA polymerase III, epsilon subunit Shewmr4_1771 2098468 - 2098106 - | hypothetical protein Shewmr4_1772 2098929 - 2098549 - | hypothetical protein Shewmr4_1773 2101117 - 2098997 - | exodeoxyribonuclease V, alpha subunit TERM 2592 2100076 - 2100063 - G 78 -9.5 -3.82031 | CCAAGCAGTATCAAA CCCGC CTGT GCGGG AAGGGCCGTGAGCAG TERM 2593 2100467 - 2100488 + g 73 -5.7 -4.56597 | TTTGCCCGTACCCGG GCCGCCGGT GATC ACCGCCAGC TTTTTGCCGAGCGCC TERM 2594 2101062 - 2101084 + g 74 -8.4 -4.08767 | overlap 2101065 AGTCTGAGTGCGCCA GCGTCAACCC ATA GGGTTGATAC TTTTGGGGGAGTCAG TERM 2595 2101065 - 2101081 + g 71 -10.9 -3.08211 | overlap 2101062 CTGAGTGCGCCAGCG TCAACCC ATA GGGTTGA TACTTTTGGGGGAGT Shewmr4_1774 2104938 - 2101114 - | exodeoxyribonuclease V, beta subunit TERM 2596 2101977 - 2101987 + g 76 -6.8 -4.4458 | opp_overlap 2101961 2101976 CTGCCCATAAGGGAT CAGC TGC GCTG TTTGTTGTATCTGTA TERM 2597 2102911 - 2102928 + g 79 -7.7 -4.59109 | gap 1, opp_overlap 2102910, overlap 2102914 GGCTAGGCTAAGCAG CGCCGGCA TAA TGCCG-CG TTTTTGCCAGATCTG TERM 2598 2104577 - 2104563 - G 73 -5.6 -4.66833 | CGTGAATGGTAAAAA TCGCCG CTT CGTCGA GGGATTTGAGCGCTA Shewmr4_1775 2108648 - 2104938 - | exodeoxyribonuclease V, gamma subunit TERM 2599 2108379 - 2108394 + g 83 -9 -4.4078 | CTTCCAGGTCATTGC CGCCTT AGTG AAGGCG TTTTCCTTGGGGACA Shewmr4_1776 2110905 - 2108758 - | transglutaminase domain-containing protein TERM 2600 2110668 - 2110680 + g 70 -9.1 -3.54543 | TGACTAAGTAGCGCG GTGGC TTT GCCAC TTTACCGACATAGAT Shewmr4_1777 2111987 - 2110902 - | hypothetical protein TERM 2601 2111325 - 2111336 + g 74 -7.2 -4.24075 | TTCACCGAGCACATG GGGC TTAA GCCC TTTGTATTCATCGAT Shewmr4_1778 2112949 - 2112038 - | ATPase TERM 2602 2112477 - 2112499 + g 73 -9.1 -3.68341 | CGGTCGAGTTGGGAT TCGGGCAGC GGAAA GGTGCCCGA TTGTTCCGTGGGGTT Shewmr4_1779 2113374 - 2114390 + | transposase IS116/IS110/IS902 family protein Shewmr4_1780 2115536 - 2114613 - | IS4 family transposase Shewmr4_1781 2115935 - 2115588 - | nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein Shewmr4_1782 2116747 - 2115923 - | putative prophage repressor TERM 2603 2116739 - 2116708 - G 73 -10.5 -3.30028 | opp_overlap 2116713, overlap 2116713 AAACACGCATAGCAA TATAATTACTGTA TATAAG TACAGTAATTATA GCGAGCATTGTTCTA Shewmr4_1783 2117486 - 2116842 - | hypothetical protein TERM 2604 2117355 - 2117336 - G 70 -4.9 -4.72007 | TTTCAGCAAAATAAA CGGCATG TTGTCC CGTGCCG CTGCCAATTTCCAGC Shewmr4_1784 2117757 - 2119046 + | FAD dependent oxidoreductase Shewmr4_1785 2120012 - 2119131 - | LysR family transcriptional regulator TERM 2605 2119776 - 2119790 + g 77 -11.4 -3.41222 | overlap 2119775 GGTAATTGCCCGCTC GGCCTC CTC GAGGCC TGTTTGCAATTGGCG TERM 2606 2120273 - 2120244 - g 73 -9.1 -3.78329 | GTTTATCAAGTCAAA GGCCGCCGTGGCC TGGG GGCCGGGACAGCC GCTCAAGATTGAAGA Shewmr4_1786 2120209 - 2121348 + | alcohol dehydrogenase TERM 2607 2121362 - 2121408 + F 76 -8.1 -4.22338 | gap 1, opp_overlap 2121369, overlap 2121369 2121400 AAGCGCTCAGTTTGC CATCACAGCAGCAGATAA-CCG CTAA CGGCTTATCTGCTGCTTATGTG TTTTAAGCTTGTGAT TERM 2608 2121369 - 2121401 + F 100 -15.8 -3.83378 | gap 1, opp_overlap 2121369, overlap 2121362 2121400 CAGTTTGCCATCACA GCAGCAGATAA-CCG CTAA CGGCTTATCTGCTGC TTATGTGTTTTAAGC TERM 2609 2121401 - 2121369 - f 100 -15.8 -2.78596 | gap 1, opp_overlap 2121362 2121369 2121400 CAGTTTGCCATCACA GCAGCAGATAA-CCG CTAA CGGCTTATCTGCTGC TTATGTGTTTTAAGC Shewmr4_1787 2121476 - 2122315 + | carboxylesterase TERM 2610 2122379 - 2122414 + F 100 -13.4 -4.38712 | opp_overlap 2122384, overlap 2122384 CTAGGGGTAAATATT AAAAAGCGCGGTGAAC ACAA GTTCGCTGCGCTTTTG TTTTCTACGGATAAA TERM 2611 2122384 - 2122409 + F 100 -13.3 -5.18371 | opp_overlap 2122384, overlap 2122379 GGTAAATATTAAAAA GCGCGGTGAAC ACAA GTTCGCTGCGC TTTTGTTTTCTACGG TERM 2612 2122409 - 2122384 - f 100 -8.9 -4.93696 | opp_overlap 2122379 2122384 GGTAAATATTAAAAA GCGCGGTGAAC ACAA GTTCGCTGCGC TTTTGTTTTCTACGG TERM 2613 2122900 - 2122924 + G 75 -10.7 -3.44229 | opp_overlap 2122900 CCGAAACGGGCAAAA TCGCCACCTTC GTC GGACGTGGCGA TTATGGTAATGGACT TERM 2614 2122924 - 2122900 - g 76 -8.5 -4.17089 | opp_overlap 2122900 CCGAAACGGGCAAAA TCGCCACCTTC GTC GGACGTGGCGA TTATGGTAATGGACT Shewmr4_1788 2122605 - 2123285 + | peptidase S1 and S6, chymotrypsin/Hap TERM 2615 2123377 - 2123420 + T 100 -17.6 -3.18264 | opp_overlap 2123382 2123384 2123390, overlap 2123380 2123390 2123415 ATTCCGTGATCAATG ATAGAGACAAAAACGCCTGC GATT GCAGGCGTTTTTGTCACTGC TTAGTCGCTAAGCAG TERM 2616 2123380 - 2123417 + T 100 -21.5 -2.79098 | opp_overlap 2123382 2123384 2123390, overlap 2123377 2123390 2123415 CCGTGATCAATGATA GAGACAAAAACGCCTGC GATT GCAGGCGTTTTTGTCAC TGCTTAGTCGCTAAG TERM 2617 2123415 - 2123382 - T 100 -22.7 -3.02096 | opp_overlap 2123380 2123377 2123390, overlap 2123384 2123390 GTGATCAATGATAGA GACAAAAACGCCTGC GATT GCAGGCGTTTTTGTC ACTGCTTAGTCGCTA TERM 2618 2123413 - 2123384 - T 100 -19.5 -3.06361 | opp_overlap 2123380 2123377 2123390, overlap 2123382 2123390 GATCAATGATAGAGA CAAAAACGCCTGC GATT GCAGGCGTTTTTG TCACTGCTTAGTCGC TERM 2619 2123407 - 2123390 - T 100 -12.7 -5.07275 | opp_overlap 2123390 2123380 2123377, overlap 2123384 2123382 TGATAGAGACAAAAA CGCCTGC GATT GCAGGCG TTTTTGTCACTGCTT TERM 2620 2123390 - 2123407 + T 100 -12.7 -4.89339 | opp_overlap 2123384 2123382 2123390, overlap 2123380 2123377 TGATAGAGACAAAAA CGCCTGC GATT GCAGGCG TTTTTGTCACTGCTT TERM 2621 2123415 - 2123437 + T 100 -15 -3.18086 | overlap 2123380 2123377 TGCAGGCGTTTTTGT CACTGCTTAG TCG CTAAGCAGTG TTAACTCTCTACTTT Shewmr4_1789 2123796 - 2123446 - | hypothetical protein Shewmr4_1790 2124021 - 2123821 - | hypothetical protein Shewmr4_1791 2127247 - 2124035 - | hypothetical protein TERM 2622 2126576 - 2126599 + g 72 -8.2 -3.91897 | opp_overlap 2126580, overlap 2126577 AAAGGCTGTGGTTAA TTCAGCTTGA TGAT TCAGGCTGAG TTTATCCATCACCAG TERM 2623 2126699 - 2126712 + g 76 -8.1 -4.24342 | opp_overlap 2126699 GGATTTGATATTTAA CGCCA ACGC TGGCG TTTGTTCATCGGCGA Shewmr4_1792 2128692 - 2127505 - | aromatic amino acid transporter TERM 2624 2127671 - 2127657 - G 95 -6.4 -5.42259 | TCACGGGTAAAAAAA TCGCGA GGA TCACGA GGGCGATTGCCGCAT TERM 2625 2128721 - 2128744 + r 71 -6.8 -4.15044 | gap 1, overlap 2128723 AACGTCTTTATTAAT G-GCTCAACTG TCT CAGTTGAGTGC TTTATTGAGGAGCAG TERM 2626 2128723 - 2128741 + r 86 -11.8 -3.10244 | overlap 2128721 CGTCTTTATTAATGG CTCAACTG TCT CAGTTGAG TGCTTTATTGAGGAG TERM 2627 2129394 - 2129363 - R 71 -8.6 -3.56375 | opp_overlap 2129360, overlap 2129361 GCAAAATCAAGAATA CTCTGCCGTAGACC AAAA GGAATGCGGCAGAG TGGTACTTAGAGGTT Shewmr4_1793 2130079 - 2129420 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2628 2129983 - 2129998 + g 71 -6.1 -4.41633 | opp_overlap 2129980, overlap 2129980 GATTTTGGATAACCG CAGGG ATAAGC CCCTG TTGTTTTTCCCAGTC Shewmr4_1794 2130897 - 2130124 - | imidazole glycerol phosphate synthase subunit HisF TERM 2629 2130215 - 2130201 - G 74 -11.4 -3.08679 | TGGCTTTATGGAACA CGCTGG CCG CCAGCG CTGCATCCACCTTCG TERM 2630 2130381 - 2130393 + g 76 -4.7 -5.03945 | CGTTGAGCACGATTT CGCCG CAG CCGCG TTTTTGTACTTCTTC Shewmr4_1795 2131616 - 2130879 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase hisH 2132398 - 2131748 - | imidazole glycerol phosphate synthase subunit HisH Shewmr4_1797 2133636 - 2132545 - | imidazole glycerol-phosphate dehydratase/histidinol phosphatase TERM 2631 2133299 - 2133313 + g 71 -6.4 -4.3534 | AGCCCTAGTTTTGGT TTGCGG CAG CTGCAA TTTTCATCGTTAAAG Shewmr4_1798 2134909 - 2133719 - | histidinol phosphate aminotransferase TERM 2632 2134144 - 2134121 - G 76 -5.9 -4.7254 | ATTGGCGAGCAAAAA GCCGCAGCG CGCGCC CGCTAAGGC AAAGGCCTTTGAAAG Shewmr4_1799 2136277 - 2134976 - | histidinol dehydrogenase hisG 2137279 - 2136281 - | ATP phosphoribosyltransferase TERM 2633 2137339 - 2137360 + r 76 -10.1 -3.25304 | opp_overlap 2137339 GCCTAAAAGCAAAAA CCCCCGGAA TTCC TTCCAGGGG TTAGTGATCATCTTT TERM 2634 2137360 - 2137339 - R 100 -12.3 -5.0925 | opp_overlap 2137339 GCCTAAAAGCAAAAA CCCCCGGAA TTCC TTCCAGGGG TTAGTGATCATCTTT TERM 2635 2137803 - 2137837 + r 89 -12.3 -2.75845 | overlap 2137800 2137800 TTGAGTATGAGTGTC AGTCACAGCGCTAAT GCCGA ATTAGTGCTGTGACA TCCCTTTTACCGTGT Shewmr4_1801 2138671 - 2137844 - | hypothetical protein Shewmr4_1802 2139063 - 2138737 - | hypothetical protein Shewmr4_1803 2139570 - 2139118 - | acyltransferase domain-containing protein Shewmr4_1804 2139999 - 2139658 - | hypothetical protein TERM 2636 2139957 - 2139941 - G 77 -11.5 -3.41602 | GTCACCTCATCACAA CCCGCCC ATG AGGCGGG GTTAAAAGCCAACAA Shewmr4_1805 2140302 - 2142281 + | helicase c2 TERM 2637 2142347 - 2142330 - T 100 -12.7 -4.77759 | ACAACGGATGAAAAA GGCCTGC GGTT GCAGGCC GTTAAGGATTAAAAG Shewmr4_1806 2144305 - 2142356 - | TonB-dependent receptor TERM 2638 2144615 - 2144636 + r 84 -11.7 -3.19192 | opp_overlap 2144615, overlap 2144618 TACAGAAGAAATAAA GAAGGGATA AAAC TATCCCTTC TTAGCTTAACTCAGA TERM 2639 2144636 - 2144615 - R 100 -11.7 -4.76087 | opp_overlap 2144615 2144618 TACAGAAGAAATAAA GAAGGGATA AAAC TATCCCTTC TTAGCTTAACTCAGA TERM 2640 2144618 - 2144633 + r 70 -7.6 -3.73783 | opp_overlap 2144615, overlap 2144615 AGAAGAAATAAAGAA GGGATA AAAC TATCCC TTCTTAGCTTAACTC Shewmr4_1807 2146180 - 2144663 - | methyl-accepting chemotaxis sensory transducer pheS 2146615 - 2147634 + | phenylalanyl-tRNA synthetase subunit alpha TERM 2641 2148370 - 2148360 - g 82 -6.8 -4.7497 | TGGATGCAGGAAAAA CTGC GCC GCAG CGGTATCCGTTCTAT TERM 2642 2149673 - 2149689 + G 73 -5.1 -4.74504 | opp_overlap 2149676, overlap 2149676 GAAGCCTTTTGGACT CAATGGT AAA ACCATCG TTTTTGAGTTGGAAT pheT 2147649 - 2150036 + | phenylalanyl-tRNA synthetase subunit beta Shewmr4_1810 2150040 - 2150336 + | integration host factor, alpha subunit TERM 2643 2150352 - 2150385 + F 100 -18.4 -4.76075 | opp_overlap 2150359 TTTCTTTAAGTTTGA TAGGAAAGCCACTC CATCGC GAGTGGCTTTCCTA TTTTCTTCCTATGCT TERM 2644 2150378 - 2150359 - f 81 -9.3 -3.8377 | opp_overlap 2150352 AAGTTTGATAGGAAA GCCACTC CATCGC GAGTGGC TTTCCTATTTTCTTC Shewmr4_1811 2150433 - 2151371 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2645 2151445 - 2151407 - T 100 -14.9 -3.25823 | opp_overlap 2151412, overlap 2151412 CGGCTCGCAGACCAA TAAAATGGGCTTTAAGT GGAAT ACTTAAAGCCCATTTTT TATCAAGCGCGAATA TERM 2646 2151440 - 2151412 - T 100 -14.8 -4.75472 | opp_overlap 2151412, overlap 2151407 CGCAGACCAATAAAA TGGGCTTTAAGT GGAAT ACTTAAAGCCCA TTTTTTATCAAGCGC TERM 2647 2151412 - 2151440 + T 100 -15.5 -5.24129 | opp_overlap 2151412 2151407 CGCAGACCAATAAAA TGGGCTTTAAGTG GAA TACTTAAAGCCCA TTTTTTATCAAGCGC Shewmr4_1812 2151841 - 2151485 - | hydrogenase nickel insertion protein HypA Shewmr4_1813 2152860 - 2151841 - | hydrogenase expression/formation protein HypE Shewmr4_1814 2153992 - 2152853 - | hydrogenase expression/formation protein HypD Shewmr4_1815 2154297 - 2154052 - | hydrogenase assembly chaperone hypC/hupF Shewmr4_1816 2155058 - 2154297 - | hydrogenase accessory protein HypB Shewmr4_1817 2157806 - 2155296 - | (NiFe) hydrogenase maturation protein HypF TERM 2648 2156781 - 2156763 - G 76 -6 -4.62069 | opp_overlap 2156765 TGTGTAGGGCAAAAA TATCCCGA GTT TTGGGATA TTAGGCGCAATCTCA Shewmr4_1818 2159728 - 2157878 - | hypothetical protein TERM 2649 2159295 - 2159309 + g 74 -7.1 -4.42386 | overlap 2159284 GTTAACGCCTTTTGG GCGCT GGTTA AGCGC TTTTCTCCGTGGCAG Shewmr4_1819 2160287 - 2159709 - | hydrogenase expression/formation protein TERM 2650 2160253 - 2160226 - G 100 -18.6 -4.47551 | ATGTAATTGACAAAA TGTACGCCGATG CCTT CATCGGCGTACA GGACATTGCCAATAC Shewmr4_1820 2160969 - 2160295 - | Ni/Fe-hydrogenase, b-type cytochrome subunit Shewmr4_1821 2162694 - 2160991 - | nickel-dependent hydrogenase, large subunit TERM 2651 2161568 - 2161587 + g 71 -7.8 -4.07885 | CCCACTTCGACGGGT TCGCCTTG ATAG CGGGGCGA TTTTACCCAAGAGTA Shewmr4_1822 2163834 - 2162698 - | hydrogenase (NiFe) small subunit HydA TERM 2652 2163323 - 2163303 - G 71 -6.7 -4.14627 | opp_overlap 2163304 2163305, overlap 2163282 2163304 TGCCGACAGAAATAA TCGCCGCAG CAC CTTCGGCGG CATGTTTGATAATTT TERM 2653 2163322 - 2163304 - G 71 -10.2 -3.08294 | opp_overlap 2163304 2163305, overlap 2163282 2163303 GCCGACAGAAATAAT CGCCGCAG CAC CTTCGGCG GCATGTTTGATAATT TERM 2654 2163711 - 2163729 + g 70 -8.1 -3.74713 | opp_overlap 2163710 2163713 TCCACTTCATAAAGT CACGGCG GGTAA TGCCGTG TTGTTGCAATTTTTC TERM 2655 2163920 - 2163939 + H 76 -8 -4.09243 | opp_overlap 2163920 TTAGGGGATAGAGAA TTCTTGAT GCAT ATCAAGAA TTTTCAAGAGATGTG TERM 2656 2163939 - 2163920 - H 70 -8 -3.59698 | opp_overlap 2163920 TTAGGGGATAGAGAA TTCTTGAT GCAT ATCAAGAA TTTTCAAGAGATGTG Shewmr4_1823 2164185 - 2164652 + | redoxin domain-containing protein Shewmr4_1824 2164656 - 2164877 + | putative lipoprotein Shewmr4_1825 2164970 - 2166316 + | hypothetical protein TERM 2657 2166354 - 2166386 + F 88 -9.9 -4.18197 | opp_overlap 2166356 2166359, overlap 2166355 2166359 CAAACTATCAGCGCA AACAATATGGGTAGC CTT GCTGCCCATATTGAG TTTTGGCTAAGCCAT TERM 2658 2166355 - 2166385 + F 100 -13.4 -3.10597 | opp_overlap 2166356 2166359, overlap 2166354 2166359 AAACTATCAGCGCAA ACAATATGGGTAGC CTT GCTGCCCATATTGA GTTTTGGCTAAGCCA TERM 2659 2166384 - 2166356 - f 100 -14.7 -3.6284 | opp_overlap 2166355 2166354 2166359, overlap 2166359 AACTATCAGCGCAAA CAATATGGGTAGC CTT GCTGCCCATATTG AGTTTTGGCTAAGCC TERM 2660 2166381 - 2166359 - f 89 -10.6 -3.94634 | opp_overlap 2166359 2166355 2166354, overlap 2166356 TATCAGCGCAAACAA TATGGGTAGC CTT GCTGCCCATA TTGAGTTTTGGCTAA TERM 2661 2166359 - 2166381 + F 100 -12.8 -3.38281 | opp_overlap 2166356 2166359, overlap 2166355 2166354 TATCAGCGCAAACAA TATGGGTAGC CTT GCTGCCCATA TTGAGTTTTGGCTAA Shewmr4_1826 2166419 - 2167321 + | ApbE family lipoprotein Shewmr4_1827 2167332 - 2167991 + | two component transcriptional regulator TERM 2662 2169312 - 2169297 - g 70 -2.5 -5.00642 | GAATTGAGATAAAAA TAGCC GACCGT GGCCA AGGTATGACTCCCGA Shewmr4_1828 2168105 - 2169505 + | periplasmic sensor signal transduction histidine kinase TERM 2663 2170080 - 2170061 - g 73 -5.6 -4.64861 | CCTGCTGAAAACAAA CCCGCCAC ACCT GTGGTGAG TCCACCTAAGGCGAC mdoG 2169932 - 2171569 + | glucan biosynthesis protein G TERM 2664 2172135 - 2172156 + G 76 -5.2 -4.77036 | gap 1, opp_overlap 2172135, overlap 2172138 CACAGATCCTGAAAT CGCCCTGTT AGAAG AACAGG-CG TTTTTAGTGCTGCGC TERM 2665 2172504 - 2172493 - g 74 -4.4 -4.82901 | TGGTGGGTACAAAAA GAAG GTAA CTTC TGGGGCCATAACGCC TERM 2666 2172590 - 2172577 - g 70 -8.1 -3.66921 | AACCTTAAGGGTAAA CCACC ATTT GGTGG CCATATCCTAAGCCA Shewmr4_1830 2171593 - 2173776 + | glucosyltransferase MdoH TERM 2667 2173872 - 2173837 - f 74 -7.6 -3.90922 | opp_overlap 2173843, overlap 2173843 ATTGTTGTCAAATAA TTGAAATGCCACTGAC GTCT GTCAGTGGCATTTTTG TTTTATCCCTTTGCT TERM 2668 2173866 - 2173843 - f 100 -15.4 -3.89435 | opp_overlap 2173843, overlap 2173837 GTCAAATAATTGAAA TGCCACTGAC GTCT GTCAGTGGCA TTTTTGTTTTATCCC TERM 2669 2173843 - 2173866 + F 100 -15.4 -5.54907 | opp_overlap 2173843 2173837 GTCAAATAATTGAAA TGCCACTGAC GTCT GTCAGTGGCA TTTTTGTTTTATCCC Shewmr4_1831 2174007 - 2175635 + | peptidoglycan binding domain-containing protein TERM 2670 2175775 - 2175788 + G 72 -8.1 -3.95324 | TGACGTTACTTTGTC CTGCC CGTA GGCAG TTGTTGTTAGGCCTC Shewmr4_1832 2175759 - 2176307 + | hypothetical protein Shewmr4_1833 2176692 - 2176258 - | hypothetical protein Shewmr4_1834 2177005 - 2177292 + | 50S ribosomal protein L25P TERM 2671 2177328 - 2177314 - T 100 -8.5 -5.29385 | opp_overlap 2177314 AATTGAAGCAAAAAA GCGCC TATAG GGCGC TTTTTTTGTGGCTGT TERM 2672 2177314 - 2177328 + T 100 -9.2 -5.65177 | opp_overlap 2177314 AATTGAAGCAAAAAA GCGCCT ATA GGGCGC TTTTTTTGTGGCTGT TERM 2673 2177392 - 2177368 - T 100 -16.5 -2.56046 | opp_overlap 2177365 2177361 TTAAACGCTAAGTCA TCCCGCGCAAC ATG GTTACGCGGGA TCCATCATTACTTGA Shewmr4_1835 2181608 - 2177400 - | hypothetical protein TERM 2674 2179238 - 2179271 + g 74 -2.3 -5.10154 | overlap 2179243 2179259 TACTGACGCCAAGTT CTAAGCCCAAGTCCC CAGT GGCACTTAGGGTGAG TTTTTGGTTTTGAAT TERM 2675 2180246 - 2180259 + g 74 -3.7 -5.00884 | GACTAAGATCGCTGA CGACG TATT CGGCG TTTTTTAGCGGCCAT TERM 2676 2180728 - 2180693 - G 70 -2.4 -4.94992 | opp_overlap 2180704 2180707, overlap 2180704 GGAAAGGCATAAAAA CCTGTGGTAAATGGGC AAGT GCCCATTCTTCAGTGG ATGCTTGCTTTTCCG TERM 2677 2180704 - 2180717 + g 70 -8.1 -3.68569 | opp_overlap 2180704 2180693, overlap 2180707 AAAACCTGTGGTAAA TGGGC AAGT GCCCA TTCTTCAGTGGATGC Shewmr4_1836 2183380 - 2181605 - | surface antigen (D15) Shewmr4_1837 2183582 - 2184613 + | peptidase T2, asparaginase 2 TERM 2678 2184624 - 2184662 + F 100 -17.7 -2.87931 | opp_overlap 2184621, overlap 2184626 AATAAGGATACAGTC TATTGCCTTAGCGCGTG CTTAA CATGCGCTAAGGTAATA TCTCTAAGCCATCCC TERM 2679 2184626 - 2184660 + F 100 -15.9 -2.9914 | opp_overlap 2184621, overlap 2184624 TAAGGATACAGTCTA TTGCCTTAGCGCGTG CTTAA CATGCGCTAAGGTAA TATCTCTAAGCCATC Shewmr4_1838 2184865 - 2185281 + | signal transduction protein TERM 2680 2185369 - 2185408 + F 83 -8.8 -4.20806 | gap 1, overlap 2185367 TACCAATACGTCCCG TTCC-TTGCTAGGATCG CTGTTTT CGATGCTAGCAATGGAA TTTGGTTTTGAACTC TERM 2681 2187472 - 2187454 - g 71 -7.4 -4.07568 | GCTGCTGCGCCAAAA TTGAGCCA GAG TGGCTCGA GCCGTTAGCGACGCA TERM 2682 2188658 - 2188644 - g 71 -7.8 -4.08216 | CCATCGCCGGTAAAA CACCTG CAA CAGGCG CTGCCCAACAAGGCA Shewmr4_1839 2185410 - 2189291 + | ATP-dependent helicase HrpA TERM 2683 2189387 - 2189356 - f 70 -5.8 -4.30844 | opp_overlap 2189361, overlap 2189361 ATCTCATCAGTAAAA TTAAATGCCGAGCC TTAT GGTTCGGCATTTTT ATTGCGCGGTTTTGC TERM 2684 2189382 - 2189361 - f 93 -10.1 -4.24384 | opp_overlap 2189361, overlap 2189356 ATCAGTAAAATTAAA TGCCGAGCC TTAT GGTTCGGCA TTTTTATTGCGCGGT TERM 2685 2189361 - 2189382 + F 100 -12.3 -5.06816 | opp_overlap 2189356 2189361 ATCAGTAAAATTAAA TGCCGAGCC TTAT GGTTCGGCA TTTTTATTGCGCGGT TERM 2686 2189424 - 2189471 + F 76 -10.1 -3.37975 | gap 1, opp_overlap 2189417 ACAATTTAGTAGCCG CTTTTAGCCGCGACGCACAT GCCCCTACG ATGTGTGTCGTGGC-AAGAG TTATCACTGGTCACT Shewmr4_1840 2190017 - 2190175 + | periplasmic nitrate reductase NapE TERM 2687 2190153 - 2190171 + F 72 -9.5 -3.07816 | TTAGTCAAATTTTCA CCGGCCC ACCGG GGGCTGG TTGAGTCAATACAGA Shewmr4_1841 2190217 - 2190474 + | NapD family protein Shewmr4_1842 2190477 - 2192966 + | nitrate reductase TERM 2688 2193135 - 2193113 - g 74 -11.2 -3.06831 | overlap 2193102 TCAACGTTGAGCCAA CTCCACCTGC GAT GCAGGCGGTG CTGAACAAAGATATC Shewmr4_1843 2192977 - 2193462 + | periplasmic nitrate reductase subunit NapB Shewmr4_1844 2193471 - 2194058 + | periplasmic nitrate reductase subunit NapC TERM 2689 2194111 - 2194087 - f 90 -11.5 -3.65351 | opp_overlap 2194087 TCATCTCCAGCCAAA GGCCAAGTG CTCTCCT CACTTGGCC TTTTTTATGGCGAAG TERM 2690 2194087 - 2194111 + F 100 -11.5 -5.24129 | opp_overlap 2194087 TCATCTCCAGCCAAA GGCCAAGTG CTCTCCT CACTTGGCC TTTTTTATGGCGAAG Shewmr4_1845 2194609 - 2195094 + | hypothetical protein TERM 2691 2195484 - 2195469 - g 100 -10.4 -5.07486 | opp_overlap 2195467 TAGTTGTAAGAAAAA CCGCCT TTTT AGGCGG CAGTTTTGAATACCG Shewmr4_1846 2195186 - 2196955 + | ATP-dependent OLD family endonuclease Shewmr4_1847 2197038 - 2197571 + | isochorismatase hydrolase Shewmr4_1848 2197652 - 2198305 + | hypothetical protein Shewmr4_1849 2198411 - 2198833 + | GCN5-related N-acetyltransferase TERM 2692 2199154 - 2199167 + T 100 -9.5 -4.7497 | opp_overlap 2199154 CTCTCCCACAAAAAA GGCGC TAAT GCGCC TTTTTGATGGATAAG TERM 2693 2199167 - 2199154 - T 100 -9.5 -5.24129 | opp_overlap 2199154 CTCTCCCACAAAAAA GGCGC TAAT GCGCC TTTTTGATGGATAAG Shewmr4_1850 2199441 - 2199205 - | hypothetical protein Shewmr4_1851 2200207 - 2199470 - | 3-deoxy-manno-octulosonate cytidylyltransferase TERM 2694 2200270 - 2200254 - R 100 -10.1 -4.64844 | opp_overlap 2200254 TGTAGATAGACAAAA GGGCTCA CAA CGAGCCC TTGTCATCTGCTTGA TERM 2695 2200254 - 2200270 + r 76 -9.4 -3.49858 | opp_overlap 2200254 TGTAGATAGACAAAA GGGCTC ACAAC GAGCCC TTGTCATCTGCTTGA Shewmr4_1852 2201360 - 2200290 - | iron-containing alcohol dehydrogenase Shewmr4_1853 2202567 - 2201380 - | DegT/DnrJ/EryC1/StrS aminotransferase TERM 2696 2201990 - 2202008 + g 77 -8.8 -4.08767 | GTGATCACCGCGCCG CCTTCACC ACA GGTGATGG TTTTAACAGAATCGA TERM 2697 2202914 - 2202886 - R 91 -10.4 -4.18161 | opp_overlap 2202893, overlap 2202893 GACAAAGCTGCAAAA CAAAAAACCTGC ACTAG GCAGGTTTTTGG CGGTTAAACGTAGCG TERM 2698 2202907 - 2202893 - R 100 -7.1 -5.79595 | opp_overlap 2202893, overlap 2202886 CTGCAAAACAAAAAA CCTGC ACTAG GCAGG TTTTTGGCGGTTAAA TERM 2699 2202893 - 2202907 + r 81 -7.1 -4.62471 | opp_overlap 2202893 2202886 CTGCAAAACAAAAAA CCTGC ACTAG GCAGG TTTTTGGCGGTTAAA Shewmr4_1854 2203562 - 2202957 - | carbonate dehydratase Shewmr4_1855 2204546 - 2203716 - | alpha/beta hydrolase fold Shewmr4_1856 2205424 - 2204612 - | peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins TERM 2700 2205175 - 2205201 + g 100 -18 -3.57144 | CTGTGGCGGCGCTGT CCGCCATCGCCT TAA AGGCGAGGGCGG TTTGAGCCTCCAGCA Shewmr4_1857 2206563 - 2205418 - | succinyl-diaminopimelate desuccinylase Shewmr4_1858 2206964 - 2206560 - | hypothetical protein TERM 2701 2207338 - 2207355 + r 100 -12.7 -4.45168 | opp_overlap 2207338 AGCCGATAGATAAAA GCCGAGC GACT GCTCGGC TTTGTGTTTTAGGAA TERM 2702 2207355 - 2207338 - R 100 -12.7 -4.61199 | opp_overlap 2207338 AGCCGATAGATAAAA GCCGAGC GACT GCTCGGC TTTGTGTTTTAGGAA Shewmr4_1859 2210070 - 2207398 - | TonB-dependent receptor TERM 2703 2208955 - 2208970 + g 76 -5.4 -4.83169 | gap 1, opp_overlap 2208954 2208953, overlap 2208956 AGCGCCGGCAAAATC T-CCGCC GAA GGCGGTA TTTTTATCGAACACT TERM 2704 2208956 - 2208968 + g 84 -10.5 -4.03995 | opp_overlap 2208954 2208953, overlap 2208955 GCGCCGGCAAAATCT CCGCC GAA GGCGG TATTTTTATCGAACA Shewmr4_1860 2210871 - 2211776 + | LysR family transcriptional regulator TERM 2705 2212378 - 2212366 - g 73 -3.3 -5.0133 | opp_overlap 2212366 CAGTCGCTTAAAAAA GCGCA GGA TGCCC TAGGTTACACCGAGC Shewmr4_1861 2211862 - 2212974 + | RND family efflux transporter MFP subunit TERM 2706 2215869 - 2215879 + G 71 -6.8 -4.15044 | CTGACAACGGCTCTC GGGA TGA TCCC TTTGTTGACCGACAG Shewmr4_1862 2212971 - 2216078 + | acriflavin resistance protein Shewmr4_1863 2216081 - 2217550 + | RND efflux system outer membrane lipoprotein TERM 2707 2217565 - 2217603 + F 100 -24.1 -4.15657 | gap 1, opp_overlap 2217565 2217566, overlap 2217565 AAGGATGAATGAGAA G-GCTCTTGCCGTGGGGA GTTC TCCCCACGGCAAGAGCGC TTTATCTGCTTCTCA TERM 2708 2217602 - 2217565 - f 100 -24.3 -3.55145 | opp_overlap 2217565 2217565, overlap 2217566 AAGGATGAATGAGAA GGCTCTTGCCGTGGGGA GTTC TCCCCACGGCAAGAGCG CTTTATCTGCTTCTC TERM 2709 2217565 - 2217602 + F 100 -24.3 -3.08671 | opp_overlap 2217565 2217566, overlap 2217565 AAGGATGAATGAGAA GGCTCTTGCCGTGGGGA GTTC TCCCCACGGCAAGAGCG CTTTATCTGCTTCTC TERM 2710 2217601 - 2217566 - f 100 -27.8 -2.72364 | opp_overlap 2217565 2217565, overlap 2217565 AGGATGAATGAGAAG GCTCTTGCCGTGGGGA GTTC TCCCCACGGCAAGAGC GCTTTATCTGCTTCT Shewmr4_1864 2217673 - 2218953 + | PqiA family integral membrane protein TERM 2711 2220201 - 2220212 + G 73 -5.8 -4.56597 | AAAATGCCAACTTTA TGGG ATAT CCCA TTTTTCCGACAAAAC Shewmr4_1865 2218970 - 2220634 + | hypothetical protein TERM 2712 2221234 - 2221192 - g 71 -11.5 -2.78463 | gap 2, opp_overlap 2221192 2221191 2221190 AGCTTGCTGATGATA TTCGCTTAATG-GC-GGCGCA GCA TACGCCTGCTCAGTAAGCGAA ATATTGTGTTGACAG Shewmr4_1866 2220636 - 2221229 + | hypothetical protein Shewmr4_1867 2222774 - 2221386 - | sodium/sulphate symporter Shewmr4_1868 2222854 - 2223666 + | AraC family transcriptional regulator TERM 2713 2223661 - 2223647 - T 89 -7.1 -5.04987 | overlap 2223636 AATACGCCCAAAAAA GCGTG CAAGC CACGC GGTAGCATTACCATC TERM 2714 2223834 - 2223804 - T 76 -6.9 -4.41348 | gap 1 TCGTTCCCAAACAAA GTCCCTCAG-TGCT AATC AGCGGCTAAGGGAC ACATGAGATTGTATT Shewmr4_1869 2226375 - 2223859 - | glucan 1,4-alpha-glucosidase TERM 2715 2224302 - 2224327 + g 72 -8.3 -3.81755 | GCCTAAAGCCGGGAA CGTTGCTGCCA TCTT TGGCAGTAAAG TTGTATTTGAGGCGT TERM 2716 2224813 - 2224842 + g 74 -7.7 -4.19472 | GTCAAGATTCACCTC GCCGCCGCTGACT AAAA AGTCCGCCGCAGC TTTTAGCATCTCTTG TERM 2717 2224924 - 2224934 + g 70 -8.2 -3.74251 | CCAGCCGAGCATGAT CGGC ATC GCCG TTTGGTCGAGCTGTA Shewmr4_1870 2228108 - 2226513 - | major facilitator transporter TERM 2718 2227621 - 2227605 - G 100 -6.5 -5.252 | opp_overlap 2227604 GATGCCGATAAAAAA GCTTTGC ATC GCATAGC CTTGGGTGCGCTGCT TERM 2719 2228129 - 2228143 + H 84 -11.4 -3.17798 | TTCCCTTCAGTAGCG GGCAGC GGG GCTGCC TTGAGTCATTTATCG TERM 2720 2228294 - 2228258 - H 100 -15.4 -5.00884 | opp_overlap 2228257 ATGTGGGTGAAAAAA TGGCGAATATACCTCT CCCTC AGAAGCATATTCGCCA ATAAATTCATTTTCA Shewmr4_1871 2228853 - 2229146 + | YCII-related TERM 2721 2229967 - 2229983 + G 74 -2.1 -5.18371 | opp_overlap 2229949, overlap 2229969 2229972 TCCCTGCGTCGCCAT CCGAGGG AAA CCGTCAG TTTTCTTTTCTGAAG Shewmr4_1872 2229281 - 2230159 + | alpha/beta hydrolase fold TERM 2722 2230376 - 2230393 + G 74 -2 -5.14563 | gap 1, overlap 2230378 GCTGTTATCGACGGC TC-TGGC CAAGC GCCATGA TTTTTTACTGCAAGC Shewmr4_1873 2230347 - 2231354 + | hypothetical protein TERM 2723 2231417 - 2231392 - T 70 -7.5 -3.78034 | gap 1, opp_overlap 2231393, overlap 2231389 2231393 CAGTGATATCAACAA GCAGGGCACCCG ATT CGGA-GCCCTGT TTATTTGTCGATTTA TERM 2724 2231393 - 2231416 + T 100 -9.5 -4.59993 | opp_overlap 2231392 2231389 2231393 AGTGATATCAACAAG CAGGGCACC CGATTC GGAGCCCTG TTTATTTGTCGATTT TERM 2725 2231416 - 2231393 - T 77 -11 -2.86338 | gap 1, opp_overlap 2231393, overlap 2231392 2231389 AGTGATATCAACAAG CAGGGCACCCG ATT CGGA-GCCCTG TTTATTTGTCGATTT Shewmr4_1874 2231889 - 2231440 - | alkylhydroperoxidase TERM 2726 2231806 - 2231794 - G 71 -6.9 -4.16921 | CAATAATGGTGAAAA CGCCG AGT CAGCG GTCGCTTTATCTAGG Shewmr4_1875 2232810 - 2231926 - | AraC family transcriptional regulator TERM 2727 2232702 - 2232680 - G 74 -7.7 -4.25859 | gap 1 TGCAAGTGAAAATAA CG-CTGCACC CAAG GGCGCAGTCG GGCAATGGCTTGAAA TERM 2728 2232997 - 2233026 + r 100 -12.3 -3.4072 | opp_overlap 2232997, overlap 2233020 GGCTCAATAAAAAAA TAGTCACCAAGAA GGGC TTCTCGGTGACTA TTGTAATGACAACTG TERM 2729 2233026 - 2232997 - R 100 -14.5 -5.7946 | opp_overlap 2232997 2233020 GGCTCAATAAAAAAA TAGTCACCAAGAA GGGC TTCTCGGTGACTA TTGTAATGACAACTG TERM 2730 2233054 - 2233094 + r 82 -3.4 -5.43866 | gap 1, opp_overlap 2233065, overlap 2233020 2233056 2233059 2233063 CTGTCGCTAGGATTG TGGTTGCAATAGTCACTGT CGTA ATAGTGACTATTGCT-CGG TTTTTTTAAGCGTTC TERM 2731 2233059 - 2233090 + r 100 -15.4 -2.99257 | opp_overlap 2233065, overlap 2233020 2233056 2233054 2233063 GCTAGGATTGTGGTT GCAATAGTCACTGT CGTA ATAGTGACTATTGC TCGGTTTTTTTAAGC TERM 2732 2233063 - 2233086 + r 71 -9 -3.32483 | opp_overlap 2233065, overlap 2233020 2233059 2233056 2233054 GGATTGTGGTTGCAA TAGTCACTGT CGTA ATAGTGACTA TTGCTCGGTTTTTTT Shewmr4_1876 2235237 - 2233126 - | alpha-glucosidase TERM 2733 2235627 - 2235641 + G 71 -5.6 -4.49939 | opp_overlap 2235626, overlap 2235628 ACTGCAAAGAAATGC CGCACC TAA GGTGCA TTTTGTCGATTGTGT Shewmr4_1877 2235508 - 2236350 + | hypothetical protein TERM 2734 2236380 - 2236366 - f 70 -9.2 -2.77962 | overlap 2236365 CCCTATAGGTCAAAT GCGCCC ATT GAGCGC TACATCCTGGCGTTA TERM 2735 2236693 - 2236675 - g 82 -8 -4.4634 | opp_overlap 2236687 AATTGCAAGAAGAAA CCGGCGCC ATT GCCGCCAG AGTGTTAGCACCCTT Shewmr4_1878 2236464 - 2236994 + | NUDIX hydrolase TERM 2736 2237045 - 2237060 + T 71 -9 -3.28712 | opp_overlap 2237045 CGCAGACATAAAAAA GCCATC TAAG GATGGC TTGTGAAGAAAGGCA TERM 2737 2237060 - 2237045 - T 100 -9 -5.4251 | opp_overlap 2237045 CGCAGACATAAAAAA GCCATC TAAG GATGGC TTGTGAAGAAAGGCA Shewmr4_1879 2237769 - 2237086 - | hemolysin III family channel protein TERM 2738 2237708 - 2237724 + g 76 -5.1 -4.75372 | TCACTAAGGCTATAC CCACTGA TAT TCAATGG TTTTTCATGACTCAT TERM 2739 2237855 - 2237834 - H 80 -10.3 -3.47617 | opp_overlap 2237834, overlap 2237827 ATTGGAAAGCCATAA TTAGCTTAC ACGT GTAAGCTAA TTTATTTTAGGGTTT TERM 2740 2237834 - 2237855 + H 100 -10.3 -4.69559 | opp_overlap 2237827 2237834 ATTGGAAAGCCATAA TTAGCTTAC ACGT GTAAGCTAA TTTATTTTAGGGTTT TERM 2741 2238700 - 2238685 - g 79 -9 -4.17657 | CAGCAGAGTGCAAAA GAGGCT GTTA AGCCTC AAAAGGTAGAAACCC Shewmr4_1880 2238046 - 2239164 + | hypothetical protein TERM 2742 2239670 - 2239652 - g 82 -11.6 -3.66356 | opp_overlap 2239665, overlap 2239624 ATGCCCAAGGGCAAA CGAGCCGC CGT GCGGCGCG CGCCCAGGCGCAAGC Shewmr4_1881 2239597 - 2241759 + | thiamine biosynthesis protein ThiC Shewmr4_1882 2241762 - 2243459 + | thiamine-phosphate pyrophosphorylase TERM 2743 2243773 - 2243756 - g 78 -2 -5.27938 | gap 1 ATTGCTAAACAAAAA TTG-GCC GTGTT GGCGCAA GGTTGTGAGATTGAT TERM 2744 2244429 - 2244403 - g 79 -8 -4.37886 | overlap 2244405 CGAGCGCGTAGAAAA GGCGAATGCTAA CAC CCAGCATTCGAC CGCAACCGTTTCATT Shewmr4_1883 2243456 - 2244475 + | UBA/THIF-type NAD/FAD binding protein Shewmr4_1884 2244472 - 2244675 + | thiamine biosynthesis protein ThiS thiG 2244677 - 2245441 + | thiazole synthase thiH 2245438 - 2246553 + | thiamine biosynthesis protein ThiH TERM 2745 2246813 - 2246802 - g 71 -7.2 -4.03234 | CTGCGCCGACAGAAA CCGC TAAG GCGG TAGATGAACCCGATA Shewmr4_1887 2246678 - 2246941 + | methyl-accepting chemotaxis protein TERM 2746 2247134 - 2247124 - g 71 -6.8 -4.12942 | CTAAATGCGCCAAAA CTCG AAG CGAG TGGGGCACTTGCACC TERM 2747 2248143 - 2248132 - g 72 -3.6 -4.77438 | ATTGAGCAGCAAAAA GCCC AAGT GGAC GCATTAAAATCAAGG Shewmr4_1888 2246944 - 2249097 + | SrpA-related protein Shewmr4_1889 2250177 - 2249275 - | LysR family transcriptional regulator TERM 2748 2250240 - 2250252 + r 75 -3.3 -5.11613 | TGAGGCTTATAGTGG CGAGC TAT GATCG TTTTTTCAATACTAT TERM 2749 2250324 - 2250287 - R 100 -9.1 -4.75174 | opp_overlap 2250287 CAGTTAATTGAAAAA GAGGTTATCGCGTTGCA ATGT TGCGGCGTGACAACCTC TTATCAGTACAAACT TERM 2750 2250287 - 2250324 + r 100 -13.5 -3.35798 | opp_overlap 2250287 CAGTTAATTGAAAAA GAGGTTATCGCGTTGCA ATGT TGCGGCGTGACAACCTC TTATCAGTACAAACT Shewmr4_1890 2251551 - 2250352 - | hypothetical protein TERM 2751 2251077 - 2251060 - GR 80 -2.6 -5.50723 | GGAGTAAAATAAAAA CTCGGG AAAGGG CGCGAG GGCTTTTTTACGGGC Shewmr4_1891 2253385 - 2251478 - | hypothetical protein TERM 2752 2252697 - 2252711 + gr 76 -10 -3.26596 | GCTTGCCACAGGGTT TGCCGA CAT TCGGCA TTAGATTGCTTTAAC TERM 2753 2253255 - 2253240 - GR 76 -10.4 -3.05384 | TGGGTGCTGACGTAA CTGGCG AAGG CGCCAG CCAAATCGATATTGG TERM 2754 2253334 - 2253309 - GR 76 -11.1 -2.63102 | overlap 2253295 AGCAGCGGCACAGGA CTTGGCGCAGC ATAG GCTGCACCGAG GGAGGATAAACACCA Shewmr4_1892 2254304 - 2253360 - | alpha-L-glutamate ligase-like protein TERM 2755 2253448 - 2253458 + g 74 -6.8 -4.35926 | ACATGCTTAAGTCTA GGCA AAA TGCC TTTTCCATTTGCAAT Shewmr4_1893 2255812 - 2254304 - | gonadoliberin III-related protein TERM 2756 2255163 - 2255122 - G 75 -10.9 -3.46873 | gap 1, overlap 2255120 CTAAATCGAACAAGA CCCACCCG-CCGTTATGGAA CAC TTCCACAAAGGGCGAGAGGG ATTGGCGGCGGCGCT TERM 2757 2255863 - 2255846 - R 71 -6.9 -4.1964 | GCCAATAGCCGAAAA GCGTGGG ATTA CCCAGGC ATTGGCGGTTCGAAC Shewmr4_1894 2256787 - 2255963 - | hypothetical protein Shewmr4_1895 2257863 - 2256871 - | putative methyltransferase Shewmr4_1896 2258591 - 2257860 - | putative methyltransferase TERM 2758 2257985 - 2257995 + g 76 -8.2 -4.26079 | TCATCACGTTTTCGA GCGC GCT GCGC TTTTGACTGATTTCG TERM 2759 2258837 - 2258864 + G 73 -11.4 -2.91276 | overlap 2258836 AGTCACTGATTGTGG TGATGGGGGAAG ACAG CTTTCCCTATCA GTTTGTCGACAACGA TERM 2760 2259564 - 2259574 + G 74 -8.2 -4.0827 | CGGCGTTGACGGTTT GCCC CAT GGGC TTTATGTGGATCTGT TERM 2761 2261534 - 2261522 - g 71 -6.2 -4.30014 | opp_overlap 2261522 2261523, overlap 2261515 2261523 TGTATCAAGCCAAAA CGGC GGGTG GCCG TTGCTACCGCCTAGC Shewmr4_1897 2258740 - 2261553 + | diguanylate cyclase TERM 2762 2261654 - 2261679 + F 77 -6.2 -4.6709 | overlap 2261655 GAAGTACTTTGGTAA TCGGCATTAT TTGACT ATAATGCCGC TTTTATCTCGTTTTG TERM 2763 2261655 - 2261678 + F 76 -9.7 -3.38627 | overlap 2261654 AAGTACTTTGGTAAT CGGCATTAT TTGACT ATAATGCCG CTTTTATCTCGTTTT aspS 2261738 - 2263513 + | aspartyl-tRNA synthetase TERM 2764 2263529 - 2263555 + F 81 -7.3 -4.58663 | gap 1, overlap 2263532 2263534 TCTTTAGTGATTATC GAGTACCGAGGC GCAA GCCTCGGT-CTA TTTTTACCCCGTCAT TERM 2765 2263532 - 2263553 + F 84 -10.1 -3.90762 | overlap 2263529 2263534 TTAGTGATTATCGAG TACCGAGGC GCAA GCCTCGGTC TATTTTTACCCCGTC TERM 2766 2263534 - 2263551 + F 100 -12.7 -3.53855 | overlap 2263532 2263529 AGTGATTATCGAGTA CCGAGGC GCAA GCCTCGG TCTATTTTTACCCCG Shewmr4_1899 2263730 - 2264476 + | hypothetical protein Shewmr4_1900 2264734 - 2265255 + | crossover junction endodeoxyribonuclease RuvC Shewmr4_1901 2265252 - 2265869 + | Holliday junction DNA helicase RuvA TERM 2767 2265901 - 2265913 + F 70 -5.5 -4.57341 | GAGGCTAGTGTTATA TTGCG GTA CGCGA TTTTTGCAGCCAGTT ruvB 2265990 - 2266994 + | Holliday junction DNA helicase B TERM 2768 2267020 - 2267045 + F 100 -16.3 -4.66264 | opp_overlap 2267026, overlap 2267026 GGATGACCTTGTTAA CAAAAAGCGGC CTTG GCCGCTTTTTG TTTTTACCGATTTTA TERM 2769 2267039 - 2267026 - f 100 -9.5 -5.06414 | opp_overlap 2267026 2267020 CCTTGTTAACAAAAA GCGGC CTTG GCCGC TTTTTGTTTTTACCG TERM 2770 2267026 - 2267039 + F 100 -9.5 -5.61881 | opp_overlap 2267026, overlap 2267020 CCTTGTTAACAAAAA GCGGC CTTG GCCGC TTTTTGTTTTTACCG TERM 2771 2267645 - 2267655 + F 73 -5.4 -4.58283 | opp_overlap 2267640, overlap 2267641 TTTGATGAAATGTGA TGTG CGT CACA TTTTTAAGGGAATTC Shewmr4_1903 2267956 - 2270523 + | TonB-dependent receptor TERM 2772 2270544 - 2270570 + F 100 -10.3 -4.25104 | gap 1, opp_overlap 2270550, overlap 2270550 GATAGAACCAACCCT CAAAAA-GCGCC TTCG GGCGCTTTTTTG TTTTGGTGCAAAAGG TERM 2773 2270563 - 2270550 - f 100 -9.5 -4.62872 | opp_overlap 2270544 2270550 ACCAACCCTCAAAAA GCGCC TTCG GGCGC TTTTTTGTTTTGGTG TERM 2774 2270550 - 2270563 + F 100 -9.5 -5.83211 | opp_overlap 2270550, overlap 2270544 ACCAACCCTCAAAAA GCGCC TTCG GGCGC TTTTTTGTTTTGGTG Shewmr4_1904 2270720 - 2271400 + | two component transcriptional regulator TERM 2775 2271489 - 2271504 + F 72 -6.2 -4.30719 | TCGCTTTCATTTTCC CCAAAT ACGG ATTTGG TTTATTCTAACGGGC Shewmr4_1905 2271581 - 2272708 + | peptidase M14, carboxypeptidase A Shewmr4_1906 2272717 - 2273034 + | hypothetical protein Shewmr4_1907 2273031 - 2273312 + | hypothetical protein TERM 2776 2273363 - 2273336 - T 100 -11.4 -3.92542 | opp_overlap 2273342, overlap 2273342 TTGATGCTTAAACAA CAAAAAGCCCAC CAAT GTGGGCTTTTTT ATGCGTAACGTTGCG TERM 2777 2273342 - 2273357 + T 100 -10.4 -5.28176 | opp_overlap 2273336 2273342 CTTAAACAACAAAAA GCCCAC CAAT GTGGGC TTTTTTATGCGTAAC TERM 2778 2273357 - 2273342 - T 100 -10.4 -5.38549 | opp_overlap 2273342, overlap 2273336 CTTAAACAACAAAAA GCCCAC CAAT GTGGGC TTTTTTATGCGTAAC ansA 2274396 - 2273383 - | cytoplasmic asparaginase I TERM 2779 2274312 - 2274338 + g 91 -7.9 -5.09895 | opp_overlap 2274310 2274311 ATTGGGTGAGAAATC CCGCCACTGGC GCAAA GCCATTTGCGG TTTTTTGCATGCCTA TERM 2780 2274460 - 2274485 + r 78 -10.5 -3.2818 | opp_overlap 2274465, overlap 2274465 GGCAGAAACCCAATA AAAAAGCCCGA GGGT TCGGGCTTTTC TCTTATGGATGTTGA TERM 2781 2274480 - 2274465 - R 100 -10.4 -5.52096 | opp_overlap 2274465 2274460 AAACCCAATAAAAAA GCCCGA GGGT TCGGGC TTTTCTCTTATGGAT TERM 2782 2274465 - 2274480 + r 100 -10.4 -4.74285 | opp_overlap 2274465, overlap 2274460 AAACCCAATAAAAAA GCCCGA GGGT TCGGGC TTTTCTCTTATGGAT Shewmr4_1909 2276352 - 2274508 - | signal peptide peptidase SppA, 67K type TERM 2783 2275113 - 2275100 - G 70 -8.1 -3.68024 | GTTGCGAAGATATAA TCGGC GCTG GCCGA AATCCAATAGCCACC Shewmr4_1910 2276518 - 2278536 + | 2,4-dienoyl-CoA reductase TERM 2784 2278584 - 2278604 + T 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCAC Shewmr4_1911 2279384 - 2278581 - | integrase catalytic subunit TERM 2785 2278815 - 2278795 - G 79 -11.1 -3.54029 | opp_overlap 2278794 2278795 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 2786 2278795 - 2278815 + g 71 -11.1 -2.79327 | opp_overlap 2278795, overlap 2278794 TGGTAGCAATCATAA CCATCCGTC ATT GACGGCTGG ATTTGGCTCGCCTGA TERM 2787 2279090 - 2279140 + g 70 -2.6 -5.01546 | gap 1, opp_overlap 2279107 CATCATGCAGTCCTT CCTCTTTCAGCAGAT-TAGGATG CTTCTT CATCCAGTGTTTGCTGAACGTGG TTTTTGTGTAGCTTT Shewmr4_1912 2279809 - 2279414 - | transposase TERM 2788 2279855 - 2279893 + r 100 -17 -2.55668 | opp_overlap 2279858 2279865, overlap 2279858 2279865 AGGACTAGACATTAC TAACACAAAAGCCTGAGT CAG ACTCAGGCTTTTTTGTTG ATTGATATGAAGATA TERM 2789 2279858 - 2279890 + r 100 -16.5 -3.43071 | opp_overlap 2279858 2279865, overlap 2279855 2279865 ACTAGACATTACTAA CACAAAAGCCTGAGT CAG ACTCAGGCTTTTTTG TTGATTGATATGAAG TERM 2790 2279890 - 2279858 - R 100 -16.5 -3.26813 | opp_overlap 2279858 2279855 2279865, overlap 2279865 ACTAGACATTACTAA CACAAAAGCCTGAGT CAG ACTCAGGCTTTTTTG TTGATTGATATGAAG TERM 2791 2279883 - 2279865 - R 100 -13.2 -4.71186 | opp_overlap 2279865 2279858 2279855, overlap 2279858 ATTACTAACACAAAA GCCTGAGT CAG ACTCAGGC TTTTTTGTTGATTGA TERM 2792 2279865 - 2279883 + r 100 -13.2 -5.5604 | opp_overlap 2279858 2279865, overlap 2279858 2279855 ATTACTAACACAAAA GCCTGAGT CAG ACTCAGGC TTTTTTGTTGATTGA Shewmr4_1913 2280409 - 2279939 - | hypothetical protein TERM 2793 2280613 - 2280625 + r 70 -7.7 -3.66356 | CTTCGACCACTTCTT GCTGT GGC ACAGC TTTGAGATTGGCGGT Shewmr4_1914 2281003 - 2280593 - | ferredoxin nrdB 2282150 - 2281020 - | ribonucleotide-diphosphate reductase subunit beta TERM 2794 2282194 - 2282170 - R 80 -9.9 -3.66018 | overlap 2282171 CGAGTATTCCAATAA GTCGGGATCCC AAA GGGATCCCGTA ACCGTTAACATTAAA TERM 2795 2282193 - 2282171 - R 93 -13.4 -2.79289 | overlap 2282170 GAGTATTCCAATAAG TCGGGATCCC AAA GGGATCCCGT AACCGTTAACATTAA Shewmr4_1916 2284500 - 2282212 - | ribonucleotide-diphosphate reductase subunit alpha TERM 2796 2282592 - 2282582 - G 70 -8.2 -3.78022 | opp_overlap 2282573 2282582 TTGACACTGATCAAA CCGC GTG GCGG TTCGATACCGTTAGT TERM 2797 2282923 - 2282944 + g 77 -11.7 -3.14344 | GTACTTCATGCCATT CTTCGCTAA GTAG TTAGCGAAG TTGATAACACCAATA TERM 2798 2283323 - 2283301 - G 70 -10 -3.21099 | opp_overlap 2283301 2283300 2283298 2283307, overlap 2283307 CTCTTGCATCATTAA TGAAAACAGT TCG ACTGCTTTCA ATGTCTTCTTACGAA TERM 2799 2283317 - 2283307 - G 71 -5.4 -4.46615 | opp_overlap 2283307 2283301 2283300 2283298, overlap 2283301 CATCATTAATGAAAA CAGT TCG ACTG CTTTCAATGTCTTCT TERM 2800 2284812 - 2284825 + r 75 -2.3 -5.40474 | ATTGAGATTAGCGTG CGACA TTGA TGACG TTTTTTTGCGCAAAT Shewmr4_1917 2285662 - 2284988 - | HAD family hydrolase Shewmr4_1918 2286374 - 2285664 - | 3-demethylubiquinone-9 3-methyltransferase TERM 2801 2287886 - 2287873 - g 74 -9.5 -3.57561 | opp_overlap 2287871 TTCGAACTGCGTAAA GCGCG AGAA CGCGC CCATATTCTTGAGGC Shewmr4_1919 2286682 - 2289522 + | DNA gyrase subunit A TERM 2802 2289539 - 2289560 + F 100 -15.9 -5.52384 | opp_overlap 2289539 TCGAGAGTATGAAAA CGAGCGTCC AATT GGACGCTCG TTTTTTTCATGGCAA TERM 2803 2289560 - 2289539 - f 100 -15.9 -4.33274 | opp_overlap 2289539 TCGAGAGTATGAAAA CGAGCGTCC AATT GGACGCTCG TTTTTTTCATGGCAA Shewmr4_1920 2289628 - 2290719 + | phosphoserine aminotransferase TERM 2804 2290811 - 2290828 + T 100 -9.9 -5.5604 | opp_overlap 2290811 AAAGTGAGAAAAAAA CGAATGC CTAG GCATTCG TTTTTTATTGGTTGC TERM 2805 2290828 - 2290811 - T 100 -9.9 -5.68039 | opp_overlap 2290811 AAAGTGAGAAAAAAA CGAATGC CTAG GCATTCG TTTTTTATTGGTTGC Shewmr4_1921 2292168 - 2290978 - | aromatic amino acid aminotransferase TERM 2806 2292349 - 2292363 + H 80 -2.8 -5.51353 | AGATCACAATTTAAC CGCAGA TAT TTTGTG TTTTTGTTATTTTTA TERM 2807 2292399 - 2292413 + H 87 -6.4 -5.14563 | opp_overlap 2292410 2292411, overlap 2292411 ACTTGAGTAATTTTC CGGTTT AAA AAGCCG TTTTTTAGTAAAAAA TERM 2808 2292432 - 2292410 - H 82 -7.8 -4.56597 | opp_overlap 2292399 2292411, overlap 2292411 TTTCCGGTTTAAAAA GCCGTTTTTT AGT AAAAAACGGT TGAATCCTGCGTCAC TERM 2809 2292411 - 2292431 + H 84 -11.3 -3.10164 | opp_overlap 2292410 2292411, overlap 2292399 TTCCGGTTTAAAAAG CCGTTTTTT AGT AAAAAACGG TTGAATCCTGCGTCA TERM 2810 2292431 - 2292411 - H 86 -11.3 -3.33744 | opp_overlap 2292399 2292411, overlap 2292410 TTCCGGTTTAAAAAG CCGTTTTTT AGT AAAAAACGG TTGAATCCTGCGTCA Shewmr4_1922 2292604 - 2293884 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2811 2294146 - 2294128 - g 75 -10.4 -3.47349 | opp_overlap 2294123 CTGGTAAAGGGACAA TTAGCCAA TTA TTGGCTAA GCATCTTGGATGGCA Shewmr4_1923 2294067 - 2294759 + | cytidylate kinase TERM 2812 2294775 - 2294742 - f 71 -3.3 -4.91873 | gap 1, opp_overlap 2294742 2294753, overlap 2294743 TACATCAACCAAAAA TTATCCAA-CACTAAC TAA GTTATTGTTTGGATAG GTATTCGTATTAAGG rpsA 2294862 - 2296529 + | 30S ribosomal protein S1 TERM 2813 2296542 - 2296560 + F 77 -10.3 -3.09759 | overlap 2296555 TAATCGCCTGTTGTA TGGGGAG TTTTT CTCCCCA TTAGGTGACTGTGTT Shewmr4_1925 2296602 - 2296889 + | integration host factor, beta subunit TERM 2814 2296923 - 2296908 - f 82 -6 -4.91511 | opp_overlap 2296900 2296908 ACCGCATTACAAAAA GCCTCC GTAA GGGGGC TTTTTTATATCTAAT TERM 2815 2296908 - 2296923 + F 100 -8.2 -5.43414 | opp_overlap 2296908, overlap 2296900 ACCGCATTACAAAAA GCCTCC GTAA GGGGGC TTTTTTATATCTAAT Shewmr4_1926 2297013 - 2297288 + | hypothetical protein TERM 2816 2297893 - 2297883 - g 70 -3.2 -4.77173 | overlap 2297884 TGCGGATAAAATAAA GCTG CTG CAAC AGGCATTAAAACAAG Shewmr4_1927 2297290 - 2298450 + | hypothetical protein Shewmr4_1928 2298493 - 2299188 + | orotidine-5'-phosphate decarboxylase TERM 2817 2299624 - 2299634 + G 71 -6.8 -4.15565 | GTGATGGACATTGAT CTGC TGG GCAG TTTTCAAGTGCTAAA Shewmr4_1929 2299261 - 2300058 + | short chain dehydrogenase Shewmr4_1930 2300148 - 2300690 + | hypothetical protein TERM 2818 2300751 - 2300770 + F 100 -10.8 -5.45652 | opp_overlap 2300751 CTGGCTACACTAAAA CCCTTAAG GCAA CTTAAGGG TTTTTTATTGCCCGT TERM 2819 2300770 - 2300751 - f 100 -10.8 -4.34402 | opp_overlap 2300751 CTGGCTACACTAAAA CCCTTAAG GCAA CTTAAGGG TTTTTTATTGCCCGT Shewmr4_1931 2300908 - 2302665 + | acyl-CoA dehydrogenase domain-containing protein TERM 2820 2302705 - 2302733 + T 100 -11.9 -4.48333 | opp_overlap 2302711, overlap 2302711 TCGAATTTACCTAAT AAAAAAGCACTGA TAT TCAGTGCTTTTTG TTTTAATTGCTGTGT TERM 2821 2302711 - 2302727 + T 100 -10.9 -5.54338 | opp_overlap 2302711, overlap 2302705 TTACCTAATAAAAAA GCACTGA TAT TCAGTGC TTTTTGTTTTAATTG TERM 2822 2302727 - 2302711 - T 100 -10.9 -5.4833 | opp_overlap 2302705 2302711 TTACCTAATAAAAAA GCACTGA TAT TCAGTGC TTTTTGTTTTAATTG Shewmr4_1932 2304315 - 2302774 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase TERM 2823 2303430 - 2303448 + g 75 -10.4 -3.38314 | overlap 2303428 TGGTATTGCCTATTT TCACTTTC CCC GAAAGTGA TATTTCCCCCTTGAG Shewmr4_1933 2304518 - 2304342 - | hypothetical protein Shewmr4_1934 2304899 - 2305231 + | hypothetical protein pssA 2305243 - 2306556 + | phosphatidylserine synthase TERM 2824 2306572 - 2306601 + T 100 -16.7 -3.72231 | opp_overlap 2306572 2306577, overlap 2306577 TCTAAATCGGAACAA TAAAATAGCCCAC ATCT GTGGGCTATTTTA TTATTGGCTATATGC TERM 2825 2306601 - 2306572 - T 100 -16.7 -3.70919 | opp_overlap 2306572 2306577, overlap 2306577 TCTAAATCGGAACAA TAAAATAGCCCAC ATCT GTGGGCTATTTTA TTATTGGCTATATGC TERM 2826 2306577 - 2306596 + T 100 -12.2 -4.91084 | opp_overlap 2306577 2306572, overlap 2306572 ATCGGAACAATAAAA TAGCCCAC ATCT GTGGGCTA TTTTATTATTGGCTA TERM 2827 2306596 - 2306577 - T 100 -12.2 -4.90079 | opp_overlap 2306572 2306577, overlap 2306572 ATCGGAACAATAAAA TAGCCCAC ATCT GTGGGCTA TTTTATTATTGGCTA TERM 2828 2306616 - 2306626 + T 70 -5.4 -4.46212 | ATTATTGGCTATATG CTCA CTA TGAG TTTTGTGGTAACAGA emrD 2307864 - 2306620 - | multidrug resistance protein D TERM 2829 2307596 - 2307573 - G 79 -5.2 -4.91109 | opp_overlap 2307573, overlap 2307575 CGCCGACGATAAAAA TCCCGATGCC AATG AGCAGCGGAA TTTTACGCCCAACTC ampC 2309458 - 2308205 - | beta-lactamase Shewmr4_1938 2309886 - 2310650 + | DTW domain-containing protein TERM 2830 2310697 - 2310721 + F 76 -10.8 -2.57944 | overlap 2310671 2310670 2310696 TGTGCAGCCATGTAC GCTTGGGGAA AAATG TTTCCCAAGC ATTCCTGTAGTAATC TERM 2831 2311063 - 2311037 - g 71 -5.8 -4.35518 | overlap 2311049 AACCCGAGATTAAAA TCTCCCCCAAAA TGG TCGTGGTGGAGA AAGTCACCACGGCAA Shewmr4_1939 2310916 - 2312172 + | RND family efflux transporter MFP subunit TERM 2832 2313317 - 2313329 + G 79 -9.1 -4.21408 | GATAGGCACCTTGGC GGCCA TGC TGGCC TTTGGTTTTACCATT Shewmr4_1940 2312172 - 2315339 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 2833 2316443 - 2316463 + G 73 -5.4 -4.72272 | gap 1, overlap 2316445 TGACTTGGTCGCTCC TTGGCG-GC ATTA GCGCGCCGA TTTTTAATCGCGGCA Shewmr4_1941 2315332 - 2316825 + | RND efflux system outer membrane lipoprotein TERM 2834 2316847 - 2316830 - T 100 -12.7 -5.5604 | opp_overlap 2316830 TTAACGAATAAAAAA TCCCCGC AGTA GCGGGGA TTTTTATCGGGTTTC TERM 2835 2316830 - 2316847 + T 100 -12.7 -4.89393 | opp_overlap 2316830 TTAACGAATAAAAAA TCCCCGC AGTA GCGGGGA TTTTTATCGGGTTTC Shewmr4_1942 2318933 - 2316876 - | twin-arginine translocation pathway signal TERM 2836 2316943 - 2316917 - G 77 -8.7 -3.99374 | gap 1 GTTTACGAATAACAA CCGTTGCCGCGC GTGG ACGCAGCA-CGG TACCAGCAGGCGTTA TERM 2837 2318581 - 2318601 + g 72 -8.3 -3.84648 | TTGCTGCCATCGGCT TTCCAAGGC GCA GCCTTAGAA TTTAATGGTGTTCCC Shewmr4_1943 2320238 - 2319129 - | phage integrase family protein TERM 2838 2319914 - 2319926 + g 73 -6.3 -4.47707 | GCTGAGTCCCACTGC TTGCT TGG AGCAA TTCTTTTTGATGACC TERM 2839 2320289 - 2320331 + H 72 -6.5 -4.32763 | gap 1, opp_overlap 2320275, overlap 2320291 2320295 ATAAGTAATTTCATT CCTTATCTACCAGTGATAAT CGTC ATTATCACTGGTAG-TGCTG TTGTTTGTATTTTAA TERM 2840 2320291 - 2320329 + H 70 -7.7 -3.73788 | gap 1, opp_overlap 2320275, overlap 2320289 2320295 AAGTAATTTCATTCC TTATCTACCAGTGATAAT CGTC ATTATCACTGGTAG-TGC TGTTGTTTGTATTTT TERM 2841 2320295 - 2320326 + H 100 -17.6 -2.93099 | overlap 2320291 2320289 AATTTCATTCCTTAT CTACCAGTGATAAT CGTC ATTATCACTGGTAG TGCTGTTGTTTGTAT TERM 2842 2320591 - 2320601 + H 70 -5.4 -4.42788 | opp_overlap 2320589 2320591 TTTATTTTTAAAAGA TGGT TTA ACCA TTTTATGCGATTAAA TERM 2843 2320788 - 2320778 - H 70 -5.4 -4.48823 | opp_overlap 2320775 2320778 AATGAACCTATAAAA TGGT GTA ACCA TTCTTTTAATTTATA Shewmr4_1944 2320864 - 2321364 + | hypothetical protein Shewmr4_1945 2321521 - 2321847 + | hypothetical protein Shewmr4_1946 2321936 - 2323912 + | ATP-dependent DNA helicase RecQ TERM 2844 2323944 - 2323921 - T 100 -14 -5.60993 | opp_overlap 2323921 TTGCTGATAAAAAAA GGGCATATCT TGTG AGATATGCCC TTTATATCACCGCAG TERM 2845 2323921 - 2323944 + T 100 -14 -4.03234 | opp_overlap 2323921 TTGCTGATAAAAAAA GGGCATATCT TGTG AGATATGCCC TTTATATCACCGCAG Shewmr4_1947 2324548 - 2323997 - | ecotin precursor TERM 2846 2324798 - 2324784 - H 70 -7.2 -3.76224 | opp_overlap 2324783 TCCTCATCGATTAAA TGAATC ACT GATTCA ACTTGATATTTATGA TERM 2847 2325022 - 2325032 + H 71 -6.8 -4.11484 | opp_overlap 2325021 2325022 CCAAAAGCAAAAATG CGCA GTT TGCG TTTTAGGAAATTGCG Shewmr4_1948 2325279 - 2326280 + | hypothetical protein TERM 2848 2326327 - 2326347 + F 73 -7.1 -4.11751 | opp_overlap 2326319 2326329 GAGTTAACCCTAAGC TATTATTAT TGA ATAATAATA TTTTAGAAAGTTAAT TERM 2849 2326371 - 2326394 + F 100 -10.4 -5.19212 | opp_overlap 2326371 AGTTAATTACAGCAA TGCCTTGTCT ATTA AGATAAGGCA TTTTTTGGTCCTCAT Shewmr4_1950 2327223 - 2328068 + | hypothetical protein TERM 2850 2328626 - 2328646 + T 100 -14 -4.35646 | opp_overlap 2328626 CCGCACGGAATAAAA CGGCGAGC ATTTA GCTCGCCG TTTATCTTTCCATCT TERM 2851 2328646 - 2328626 - T 100 -14 -4.67982 | opp_overlap 2328626 CCGCACGGAATAAAA CGGCGAGC ATTTA GCTCGCCG TTTATCTTTCCATCT Shewmr4_1951 2330043 - 2328664 - | MATE efflux family protein TERM 2852 2328752 - 2328742 - G 70 -4.6 -4.73388 | overlap 2328744 2328745 AAGGCGGATGAAAAA CAGC AGC GCCG CCGAGGTGAGGCCTG TERM 2853 2328803 - 2328788 - G 86 -9 -4.57341 | AATCCTGTCCAAAAA CCATGG GCGC CCATGG CGGGGACGATTAAGT Shewmr4_1952 2330077 - 2330697 + | riboflavin synthase subunit alpha Shewmr4_1953 2330907 - 2330707 - | hypothetical protein Shewmr4_1954 2331505 - 2331122 - | hypothetical protein TERM 2854 2332422 - 2332397 - g 70 -8.3 -3.68836 | overlap 2332395 ACTCTGAAAACAAGA TGCTGCAACGT ATTT ACGGTACAGCA TGGGCTGATAAAAAA TERM 2855 2332657 - 2332639 - g 86 -8.9 -4.5774 | TACCAAGAAGTAAAA GGTCCAT TGATG ATGGACC GCGTACTGTGGGAAC Shewmr4_1955 2331757 - 2333685 + | threonyl-tRNA synthetase Shewmr4_1956 2333800 - 2334231 + | translation initiation factor 3 rpmI 2334316 - 2334510 + | 50S ribosomal protein L35 rplT 2334527 - 2334883 + | 50S ribosomal protein L20 TERM 2856 2334899 - 2334872 - T 73 -5.6 -4.47007 | opp_overlap 2334880 GAAAAAGCAAAAGAA GCGTTAAACTAA GCAA TTAGTTTGTCGC ACTTAAGAGGGGACC TERM 2857 2334909 - 2334924 + T 100 -10.4 -5.84381 | opp_overlap 2334908 TGTCGCACTTAAGAG GGGACC ATTT GGTCCC TTTTTTTGTTGCTGA TERM 2858 2334983 - 2335002 + T 100 -12.2 -5.30616 | opp_overlap 2334983 AAGCAGATAAAAAAA TAGCAGGC TGAT GCCTGCTA TTTTTATTTGAGTGG TERM 2859 2335002 - 2334983 - T 100 -12.2 -5.75478 | opp_overlap 2334983 AAGCAGATAAAAAAA TAGCAGGC TGAT GCCTGCTA TTTTTATTTGAGTGG Shewmr4_1959 2336000 - 2335047 - | thioredoxin reductase Shewmr4_1960 2336266 - 2336469 + | hypothetical protein TERM 2860 2336475 - 2336452 - T 100 -12.5 -5.32882 | GATCAGCATAAAAAA TCGGCCTCA ACAGAG TGAGGCCGA ACAAAACTGAGTAGG Shewmr4_1961 2337633 - 2336518 - | L-alanine dehydrogenase TERM 2861 2337587 - 2337601 + g 76 -4.2 -5.05577 | opp_overlap 2337582, overlap 2337588 GAAGGAACCATACCG ACACGA TAC TCGTGG TTTTTAATTTCCTTT TERM 2862 2337673 - 2337659 - H 77 -6.4 -4.58283 | CAATTGCCTGAAAAA CCCACT TTT AATGGG CATAATTGTTATTTT Shewmr4_1962 2337814 - 2338320 + | leucine-responsive transcriptional regulator TERM 2863 2338339 - 2338358 + F 100 -12.2 -4.19678 | opp_overlap 2338342, overlap 2338342 CCTGAACGTTTTCAA TAAGGGGC TTAG GCCCCTTA TTTATTCCAGTGTAA TERM 2864 2338342 - 2338355 + F 85 -9.5 -4.21438 | opp_overlap 2338342, overlap 2338339 GAACGTTTTCAATAA GGGGC TTAG GCCCC TTATTTATTCCAGTG TERM 2865 2338355 - 2338342 - f 78 -9.5 -3.62522 | opp_overlap 2338339 2338342 GAACGTTTTCAATAA GGGGC TTAG GCCCC TTATTTATTCCAGTG TERM 2866 2338402 - 2338433 + F 86 -6.6 -4.98522 | overlap 2338404 CAATGATCACCTTGC TTTGCCCTTAGGTT TGCC AGCTTAGGGGCATA TTTTTATCTCGCATT TERM 2867 2338404 - 2338431 + F 85 -9.2 -4.11141 | overlap 2338402 ATGATCACCTTGCTT TGCCCTTAGGTT TGCC AGCTTAGGGGCA TATTTTTATCTCGCA Shewmr4_1963 2338642 - 2341386 + | DNA translocase FtsK TERM 2868 2341405 - 2341435 + F 93 -9.8 -4.25104 | overlap 2341406 TAAGCTAGATGTCAG TTTGAACTCGCC ATAATGC GGCGAGTTCAAC TTTTAGTCCAAAGGA TERM 2869 2341406 - 2341434 + F 100 -13.3 -3.14848 | overlap 2341405 AAGCTAGATGTCAGT TTGAACTCGCC ATAATGC GGCGAGTTCAA CTTTTAGTCCAAAGG TERM 2870 2341573 - 2341551 - g 77 -9.8 -3.71917 | opp_overlap 2341550 2341551 ACGCGAAACCTTAAA CGGCACTGAG TCA CTCAAGGCCG ATTTCAAGCAAACCG Shewmr4_1964 2341456 - 2342076 + | outer membrane lipoprotein carrier protein LolA TERM 2871 2342871 - 2342894 + G 70 -11 -2.52156 | gap 1, overlap 2342870 2342878 2342884 GTACACAAATCGATT CGTGGC-TCGG CGC CCGATGCCGCG CTGTATTGGTTCTGC Shewmr4_1965 2342085 - 2343416 + | recombination factor protein RarA Shewmr4_1966 2343409 - 2343783 + | camphor resistance protein CrcB Shewmr4_1967 2343802 - 2345088 + | seryl-tRNA synthetase Shewmr4_1968 2345107 - 2345229 + | hypothetical protein TERM 2872 2345247 - 2345269 + T 100 -13.6 -5.4505 | opp_overlap 2345247 CGACTCAAATAAAAA GGTATATTCC ACT GGAATATACC TTTTTTGTTAGCAGA TERM 2873 2345269 - 2345247 - T 100 -13.6 -5.30616 | opp_overlap 2345247 CGACTCAAATAAAAA GGTATATTCC ACT GGAATATACC TTTTTTGTTAGCAGA Shewmr4_1969 2345635 - 2345297 - | DsrC family protein Shewmr4_1970 2345910 - 2345629 - | DsrH family protein Shewmr4_1971 2346266 - 2345910 - | DsrE family protein Shewmr4_1972 2346673 - 2346281 - | DsrE family protein TERM 2874 2346365 - 2346351 - G 85 -7.2 -4.79352 | CCACCCATAATAAAA GAATGT TCA ACATTC CAGTGGCTTAAGCCG TERM 2875 2346701 - 2346682 - R 100 -12.2 -5.9873 | opp_overlap 2346682 TCATCATAAAAAAAA TGGCCCTA AAAG TAGGGCCA TTTTAGCGTAAGTTT TERM 2876 2346682 - 2346701 + r 100 -12.2 -4.15854 | opp_overlap 2346682 TCATCATAAAAAAAA TGGCCCTA AAAG TAGGGCCA TTTTAGCGTAAGTTT Shewmr4_1973 2347389 - 2346730 - | hypothetical protein Shewmr4_1974 2348560 - 2347649 - | putative DNA-binding transcriptional regulator Shewmr4_1975 2348667 - 2349938 + | inner membrane transport protein YdhC TERM 2877 2350117 - 2350148 + T 100 -15.4 -4.66833 | opp_overlap 2350124, overlap 2350124 CTCCGCCATATTCTA CGAAAAAGCCATCA GCAA TGATGGCTTTTTTG TTTTTGCAGTTCCGG TERM 2878 2350124 - 2350141 + T 100 -9.9 -5.93252 | opp_overlap 2350124, overlap 2350117 ATATTCTACGAAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGCA TERM 2879 2350141 - 2350124 - T 100 -9.9 -4.74132 | opp_overlap 2350117 2350124 ATATTCTACGAAAAA GCCATCA GCAA TGATGGC TTTTTTGTTTTTGCA TERM 2880 2350224 - 2350244 + T 100 -9.7 -5.27938 | opp_overlap 2350224 CAATTCAGATAAAAA GGCCGCTAA TGA TTAGCAGCC TTTTTCTTTCGCAAT TERM 2881 2350244 - 2350224 - T 100 -11.9 -5.00642 | opp_overlap 2350224 CAATTCAGATAAAAA GGCCGCTAA TGA TTAGCAGCC TTTTTCTTTCGCAAT Shewmr4_1976 2350868 - 2350338 - | hypothetical protein Shewmr4_1977 2351238 - 2352911 + | ribulokinase araD 2352913 - 2353608 + | L-ribulose-5-phosphate 4-epimerase Shewmr4_1979 2353647 - 2355149 + | L-arabinose isomerase TERM 2882 2355164 - 2355188 + F 100 -9.4 -4.83169 | gap 1, opp_overlap 2355168, overlap 2355168 ATTCTCGCGCAGCAA T-AAAGCCGCC TTCG GGCGGCTTTCA TTTTTCTGGCACCAT TERM 2883 2355183 - 2355168 - f 100 -11.8 -4.24342 | opp_overlap 2355164 2355168 TCGCGCAGCAATAAA GCCGCC TTCG GGCGGC TTTCATTTTTCTGGC TERM 2884 2355168 - 2355183 + F 100 -11.8 -4.38116 | opp_overlap 2355168, overlap 2355164 TCGCGCAGCAATAAA GCCGCC TTCG GGCGGC TTTCATTTTTCTGGC Shewmr4_1980 2355226 - 2355834 + | HAD family hydrolase Shewmr4_1981 2356070 - 2356786 + | GntR family transcriptional regulator TERM 2885 2356826 - 2356843 + T 100 -9.9 -5.37593 | opp_overlap 2356826 CTACCGATAAAAAAA GGTGAAC TTAG GTTCACC TTTTTTACTTTGGCG TERM 2886 2356843 - 2356826 - T 100 -9.9 -5.64274 | opp_overlap 2356826 CTACCGATAAAAAAA GGTGAAC TTAG GTTCACC TTTTTTACTTTGGCG Shewmr4_1982 2357822 - 2356875 - | glycoside hydrolase family protein TERM 2887 2357126 - 2357137 + g 76 -4.4 -5.00616 | GAATACTATCGCTGG TTGC ATAG GCAA TTTTTTCAGGGAAGC TERM 2888 2357848 - 2357868 + H 74 -9.9 -3.11922 | overlap 2357846 2357845 TTGTTTTTTGATATT TTGGTATTA TAG TAATACCAA TACTTTTACGTGCTA TERM 2889 2359211 - 2359231 + G 79 -11.1 -3.57561 | opp_overlap 2359211 2359213 GCACACCTGATGCAA CACCGCGGT AAA GCCGTGGTG TTTGAAAGCTTCGAC Shewmr4_1983 2357999 - 2359732 + | dihydroxy-acid dehydratase Shewmr4_1984 2359793 - 2360563 + | short-chain dehydrogenase/reductase SDR TERM 2890 2361374 - 2361391 + G 72 -3.5 -4.79352 | TATTAAGCAATTAAC TAATGGT TATG ATCATTA TTTTGTTATGGATAG Shewmr4_1985 2360643 - 2361698 + | aldose 1-epimerase TERM 2891 2361983 - 2361965 - g 76 -8.2 -4.19817 | GGCATCGATTTAAAA TTTGCCGA CGC TCAGCAAA AACAAGAGAACCAAA Shewmr4_1986 2361797 - 2362738 + | periplasmic binding protein/LacI transcriptional regulator Shewmr4_1987 2362770 - 2364272 + | ABC transporter related TERM 2892 2364427 - 2364412 - g 100 -6.8 -5.7946 | GGTTCAAGAAAAAAA CGCTCG TTAC CAAGCG GGCAAGTCGACCTCC TERM 2893 2364903 - 2364916 + G 70 -4.5 -4.59773 | overlap 2364904 CTGGCTTTGCCGCCA TTGGC GTGG GCCAG TTTTTAGGCCTGCCG Shewmr4_1988 2364269 - 2365486 + | inner-membrane translocator TERM 2894 2365527 - 2365554 + GF 72 -7.7 -3.84719 | GATCACCGCCTCATT GCTGCTGACCA TGTTTT TGGTCGGCACC TTTCAGTTTGACGGT Shewmr4_1989 2365483 - 2366445 + | inner membrane ABC transporter permease protein YjfF Shewmr4_1990 2366420 - 2367556 + | Alpha-N-arabinofuranosidase TERM 2895 2367821 - 2367805 - g 86 -11.5 -4.00532 | overlap 2367817 GGTTTAAACACCAAA GCGGCCC AAT GAGCCGC CACGTATGGGCGCCC Shewmr4_1991 2367618 - 2368619 + | Alpha-N-arabinofuranosidase TERM 2896 2368676 - 2368650 - f 71 -10.1 -2.60956 | gap 1, opp_overlap 2368651, overlap 2368649 AAATGATGTGATAAC CGCGGGGCATGC TTCA GCA-GCCCCGCT TTTTTATGCCTGACT TERM 2897 2368651 - 2368675 + F 100 -13.6 -5.28176 | gap 1, opp_overlap 2368650 2368649 AATGATGTGATAACC GCGGGGCATGC TTCA GCA-GCCCCGC TTTTTTATGCCTGAC Shewmr4_1992 2368903 - 2369493 + | hypothetical protein TERM 2898 2369711 - 2369685 - T 100 -12.4 -4.85599 | opp_overlap 2369688 2369688 GTTAGGGGATAAAAA CAAGGGAAAGCG TTT CACTTTCCCTTA TCTGAATCAGTGTGT TERM 2899 2369688 - 2369708 + T 78 -9.7 -3.524 | opp_overlap 2369685, overlap 2369688 AGGGGATAAAAACAA GGGAAAGCG TTT CACTTTCCC TTATCTGAATCAGTG Shewmr4_1993 2372149 - 2369762 - | hypothetical protein TERM 2900 2370502 - 2370516 + g 70 -4.9 -4.59773 | overlap 2370503 AGTTTAAGGCTTCAT TGGCG ATAGG CGCCG TTTTTGCCGCTAGCA TERM 2901 2372234 - 2372219 - R 100 -10.4 -5.24129 | opp_overlap 2372221 TTGCGTGATAAAAAA GCCCCT GGGT AGGGGC TTAGGGTGTTATCGC Shewmr4_1994 2373702 - 2372257 - | sugar (glycoside-Pentoside-hexuronide) transporter Shewmr4_1995 2373911 - 2374978 + | arabinan endo-1,5-alpha-L-arabinosidase Shewmr4_1996 2374981 - 2376885 + | glycoside hydrolase family protein TERM 2902 2376934 - 2376903 - T 80 -8.8 -3.9122 | overlap 2376904 CATCCTTCTAAATAA CTGAGCATCACCAC GGCG GTGGTAATACCCAA ACAACCTGAAGATGT TERM 2903 2376933 - 2376904 - T 73 -10.1 -2.94411 | overlap 2376903 ATCCTTCTAAATAAC TGAGCATCACCAC GGCG GTGGTAATACCCA AACAACCTGAAGATG TERM 2904 2377185 - 2377214 + T 100 -11.5 -5.14965 | opp_overlap 2377187, overlap 2377172 GTTTGCTCGGCACCA GAGCAGTAGTTGT GTAT GCAGCTGCTGCTC TTTTTTACTCAGGCT Shewmr4_1997 2378000 - 2377245 - | hypothetical protein TERM 2905 2378147 - 2378129 - R 100 -11.8 -5.71295 | opp_overlap 2378129 ATATAAAAAGAAAAA GCTAATCC ATA GGATTAGC TTTTTCGGTTTACAC TERM 2906 2378129 - 2378147 + r 100 -11.8 -4.81249 | opp_overlap 2378129 ATATAAAAAGAAAAA GCTAATCC ATA GGATTAGC TTTTTCGGTTTACAC Shewmr4_1998 2380985 - 2378175 - | TonB-dependent receptor TERM 2907 2381490 - 2381504 + H 73 -3.6 -5.01811 | opp_overlap 2381466, overlap 2381466 2381463 2381486 AACTTTAGTGTTACA GTAGTA TTG TATTAC TTTTTCATTTGATAC Shewmr4_1999 2381573 - 2384938 + | glycoside hydrolase family protein TERM 2908 2384979 - 2384964 - f 82 -10.4 -3.70902 | opp_overlap 2384964 CTGTCTATACTGAAA GCACCC ATTC GGGTGC TTTTTTATTATTTTC TERM 2909 2384964 - 2384979 + F 100 -10.4 -5.77677 | opp_overlap 2384964 CTGTCTATACTGAAA GCACCC ATTC GGGTGC TTTTTTATTATTTTC Shewmr4_2000 2385038 - 2385889 + | hypothetical protein Shewmr4_2001 2385989 - 2386897 + | SMP-30/gluconolaconase/LRE domain-containing protein Shewmr4_2002 2388699 - 2387404 - | phage integrase family protein TERM 2910 2388773 - 2388750 - R 84 -9.7 -3.86311 | ATACTTAAATGCAAA TGCCGATAA CGTTAT TTATCGGCA TTAACCAAAAACTCA Shewmr4_2003 2388979 - 2388761 - | hypothetical protein TERM 2911 2389687 - 2389705 + G 75 -8.8 -3.9392 | GGGTTTAGAGCGTGT GCTTGAGG CCA CCTCGGGC TTATTTGAACTCAGG Shewmr4_2004 2389151 - 2390728 + | response regulator receiver modulated metal dependent phosphohydrolase Shewmr4_2005 2391322 - 2390837 - | hypothetical protein TERM 2912 2391452 - 2391476 + H 71 -4.9 -4.60143 | opp_overlap 2391459, overlap 2391454 ACGCATTGACATGAC TTCACAACCCT AAT AGGGAAGTGGA TTTTGTGTCATATAT TERM 2913 2392455 - 2392477 + G 71 -6.2 -4.30833 | opp_overlap 2392455, overlap 2392459 GGCGCATGGCATAAA CTCCGTACTG ACC CAGTACTGCG TTTCTTAGTGGTTTC Shewmr4_2006 2391546 - 2392982 + | cytochrome c oxidase, cbb3-type, subunit I Shewmr4_2007 2392995 - 2393621 + | cytochrome c oxidase, cbb3-type, subunit II Shewmr4_2008 2393633 - 2393809 + | Cbb3-type cytochrome oxidase component Shewmr4_2009 2393809 - 2394777 + | cytochrome c oxidase, cbb3-type, subunit III TERM 2914 2394798 - 2394818 + F 100 -13.3 -5.78622 | opp_overlap 2394793 TGTGAGTAACGCTAA GGCCTCGAT AAC GTCGAGGCC TTTTTTTTAAAGTGC TERM 2915 2395091 - 2395071 - g 72 -8.3 -3.87149 | overlap 2395073 TTGAGTAAAGTCAAA TATGCCAAG CAG CTTGGCATG CAATGGCAACTCGAA TERM 2916 2395089 - 2395073 - g 77 -10.9 -3.51904 | overlap 2395071 GAGTAAAGTCAAATA TGCCAAG CAG CTTGGCA TGCAATGGCAACTCG Shewmr4_2010 2394888 - 2395367 + | hypothetical protein Shewmr4_2011 2395378 - 2397789 + | heavy metal translocating P-type ATPase Shewmr4_2012 2397810 - 2398010 + | cytochrome oxidase maturation protein, cbb3-type Shewmr4_2013 2398019 - 2398711 + | hypothetical protein TERM 2917 2399272 - 2399261 - g 86 -5.8 -5.1356 | overlap 2399262 GCTGAGCAAGAAAAA CGCT GAAG AGCG CCTCGCCGCGTTTAT Shewmr4_2014 2398767 - 2399519 + | fumarate/nitrate reduction transcriptional regulator TERM 2918 2399649 - 2399613 - f 82 -10.2 -3.72756 | overlap 2399621 GAACAATACAGATAA TTGCCAAAGGCTCATG ATGAA CATGAGCCTATGACTA AAGGAACATGTTATG TERM 2919 2399641 - 2399621 - f 84 -11.2 -3.63305 | overlap 2399613 CAGATAATTGCCAAA GGCTCATG ATGAA CATGAGCC TATGACTAAAGGAAC TERM 2920 2399691 - 2399681 - g 78 -4 -5.19212 | AGGATTATCAAAAAA TACT GGT AGTA GTCGACCCTACGACA Shewmr4_2015 2399662 - 2400594 + | universal stress protein UspE TERM 2921 2400665 - 2400637 - f 71 -8.7 -3.40052 | opp_overlap 2400638, overlap 2400635 2400638 ATAGCTGGAATAATA CGCGCCCTGAAAC TGA GTTACTGGGCGCT TTTTTTATGTTGGAA TERM 2922 2400664 - 2400638 - f 83 -12.2 -2.63549 | opp_overlap 2400638, overlap 2400637 2400635 TAGCTGGAATAATAC GCGCCCTGAAAC TGA GTTACTGGGCGC TTTTTTTATGTTGGA TERM 2923 2400638 - 2400664 + F 100 -12.2 -5.80817 | opp_overlap 2400638 2400637 2400635 TAGCTGGAATAATAC GCGCCCTGAAAC TGA GTTACTGGGCGC TTTTTTTATGTTGGA Shewmr4_2016 2400672 - 2401640 + | PP-loop domain-containing protein TERM 2924 2401653 - 2401682 + T 100 -16.7 -2.56571 | opp_overlap 2401660, overlap 2401660 TAAACGCGATACGCA TAAAAAAGCCCAC GAGA GTGGGCTTTTTTA TAACTTAAATCTATC TERM 2925 2401675 - 2401660 - T 100 -10.4 -5.29782 | opp_overlap 2401660 2401653 GATACGCATAAAAAA GCCCAC GAGA GTGGGC TTTTTTATAACTTAA TERM 2926 2401660 - 2401675 + T 100 -10.4 -5.31456 | opp_overlap 2401660, overlap 2401653 GATACGCATAAAAAA GCCCAC GAGA GTGGGC TTTTTTATAACTTAA Shewmr4_2017 2402322 - 2401699 - | hypothetical protein Shewmr4_2018 2403127 - 2402315 - | bax protein, putative TERM 2927 2404082 - 2404096 + G 76 -5.6 -4.88736 | AAGCCTTAGCGACGA CCACTG CGC CCGTGG TTTTTATCGATAATC Shewmr4_2019 2403445 - 2404368 + | hypothetical protein TERM 2928 2404462 - 2404433 - T 100 -14.5 -3.76167 | opp_overlap 2404439, overlap 2404439 GGACAACTCAAAATA CAAAAAGGACAGC CTAG GCTGTCCTTTTTA GTGAGCCCTCTTCTA TERM 2929 2404439 - 2404456 + T 100 -11.3 -4.7254 | opp_overlap 2404439 2404433 CTCAAAATACAAAAA GGACAGC CTAG GCTGTCC TTTTTAGTGAGCCCT TERM 2930 2404456 - 2404439 - T 100 -11.3 -5.28983 | opp_overlap 2404439, overlap 2404433 CTCAAAATACAAAAA GGACAGC CTAG GCTGTCC TTTTTAGTGAGCCCT Shewmr4_2020 2405713 - 2404520 - | aromatic amino acid aminotransferase TERM 2931 2405994 - 2405975 - R 100 -12.2 -5.4505 | opp_overlap 2405975 TGCGGCAATAAAAAA GGCCTAAC ATCT GTTAGGCC TTCTCTATGTTATGG TERM 2932 2405975 - 2405994 + r 93 -12.2 -3.71149 | opp_overlap 2405975 TGCGGCAATAAAAAA GGCCTAAC ATCT GTTAGGCC TTCTCTATGTTATGG TERM 2933 2406048 - 2406068 + r 75 -10.5 -2.89742 | overlap 2406051 GCACGCTGTTACCAG CGAGGGATT TTA AATCCCTTG TGTCTACCGATTCCA TERM 2934 2406051 - 2406065 + r 73 -8.6 -3.5947 | overlap 2406048 CGCTGTTACCAGCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 2935 2406598 - 2406583 - R 100 -8.2 -5.626 | opp_overlap 2406583 CATGCCATAAAAAAA GCGCCC TACT GGACGC TTTTTCTTGGACGTT TERM 2936 2406583 - 2406598 + r 82 -6 -5.08088 | opp_overlap 2406583 CATGCCATAAAAAAA GCGCCC TACT GGACGC TTTTTCTTGGACGTT Shewmr4_2021 2408063 - 2406630 - | glyceraldehyde-3-phosphate dehydrogenase Shewmr4_2022 2408270 - 2409160 + | hypothetical protein TERM 2937 2410024 - 2410007 - g 74 -6.9 -4.42238 | opp_overlap 2410007 TGATCCCAACTAAAA CTGGCGC TGCC GCGGCAG TAGGTTTAGTTGTAC Shewmr4_2023 2409373 - 2410383 + | glyceraldehyde-3-phosphate dehydrogenase TERM 2938 2410421 - 2410404 - T 100 -14.1 -4.72272 | opp_overlap 2410404 CTTCTTTATCAAAAA GCCCCGC TCTT GCGGGGC TTTTTTTATACCGAT TERM 2939 2410404 - 2410421 + T 100 -14.1 -5.61596 | opp_overlap 2410404 CTTCTTTATCAAAAA GCCCCGC TCTT GCGGGGC TTTTTTTATACCGAT Shewmr4_2024 2411021 - 2410509 - | superoxide dismutase, copper/zinc binding TERM 2940 2410775 - 2410791 + g 71 -5.1 -4.56914 | CTGCCGCGCCAGCAG GGACG ATTTTTC CGTCC TTTTCCTTTGGATCA TERM 2941 2411256 - 2411285 + r 74 -4.9 -4.76644 | opp_overlap 2411261, overlap 2411261 AATTTGAACCGATAC AAAAATCCCCGCC AAGT GGCAGGGATTTCA TTTTTCGTGAGTGTT TERM 2942 2411261 - 2411280 + r 88 -9.2 -4.35327 | opp_overlap 2411261, overlap 2411256 GAACCGATACAAAAA TCCCCGCC AAGT GGCAGGGA TTTCATTTTTCGTGA TERM 2943 2411280 - 2411261 - R 100 -11.4 -5.00642 | opp_overlap 2411261 2411256 GAACCGATACAAAAA TCCCCGCC AAGT GGCAGGGA TTTCATTTTTCGTGA Shewmr4_2025 2412386 - 2411313 - | quinolinate synthetase TERM 2944 2412473 - 2412490 + r 100 -8.4 -5.18357 | opp_overlap 2412473, overlap 2412465 CCTGCGAATAAAAAA GGACGC TAAATT GCGTCC TTTTTTGCTGGATTG TERM 2945 2412490 - 2412473 - R 100 -8.4 -5.4505 | opp_overlap 2412473 2412465 CCTGCGAATAAAAAA GGACGC TAAATT GCGTCC TTTTTTGCTGGATTG Shewmr4_2026 2414126 - 2412531 - | dihydrolipoamide acetyltransferase TERM 2946 2413151 - 2413186 + g 70 -4.9 -4.62069 | opp_overlap 2413151 2413155, overlap 2413163 ACTCTTCGCAATAAG TGAAGTGTGGAAT-GGT GGAT ACCGATTCCAC-CATCA TTTTTGCCATCACGG Shewmr4_2027 2415113 - 2414136 - | transketolase, central region Shewmr4_2028 2416295 - 2415117 - | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) Shewmr4_2029 2417492 - 2416458 - | succinylglutamate desuccinylase Shewmr4_2030 2417771 - 2418250 + | peptide methionine sulfoxide reductase TERM 2947 2418334 - 2418308 - T 100 -13.1 -5.27335 | opp_overlap 2418308 CGCTGCAAATAAAAA CGCACTCATAG GATTT CCATGAGTGCG TTTTTTATCGGTAAA TERM 2948 2418308 - 2418334 + T 100 -11.7 -5.28176 | gap 1, opp_overlap 2418308 CGCTGCAAATAAAAA CGCACTCATAGG ATTT CC-ATGAGTGCG TTTTTTATCGGTAAA TERM 2949 2418373 - 2418385 + T 78 -10.5 -3.35679 | opp_overlap 2418356 TTAACTGCTAGGTCA GGCGC TAA GCGCC TTATCAATCAAGGCC Shewmr4_2031 2420022 - 2418370 - | phosphoglucomutase TERM 2950 2418788 - 2418776 - G 74 -4.7 -4.81814 | AGTACCAGAATAAAA CCGTC TTT GTCGG TACACCAAGTCGTGC TERM 2951 2420081 - 2420064 - R 100 -12.7 -3.89336 | overlap 2420058 TTAATTAAATGGAAA CGCCGCA TCAT TGCGGCG TCGATAAAGGCGTTA Shewmr4_2032 2420645 - 2420094 - | replication initiation regulator SeqA TERM 2952 2420795 - 2420782 - H 70 -3.8 -4.7629 | overlap 2420764 TCATTAATCTAAAAA TGCG TGAAAT CGCA CATCAAATTAGCACA Shewmr4_2033 2420917 - 2421717 + | alpha/beta hydrolase fold TERM 2953 2421972 - 2421986 + G 79 -9.2 -4.15222 | TGGTTAGTGTTATTT CTCGGC TGC GCCGGG TTTATTGCAAAAGGT Shewmr4_2034 2421819 - 2422040 + | hypothetical protein Shewmr4_2035 2422052 - 2422324 + | LexA regulated protein TERM 2954 2422526 - 2422506 - g 74 -8.3 -4.04413 | overlap 2422520 AAGAGCACCAAAGAA CAGATCGCA GAA TACGACCTG CTGCTGTTCGGCATC TERM 2955 2422912 - 2422882 - g 74 -7.7 -4.27474 | overlap 2422908 AAATCTACGAAGAAA TGTGCTTAGCC GAGTTCGAA GACTAAGCACA GCTCCGTAAAAAAAG Shewmr4_2036 2422380 - 2422907 + | flavodoxin FldA TERM 2956 2422957 - 2422913 - f 79 -10.9 -2.96979 | gap 1, opp_overlap 2422917 2422919 2422927, overlap 2422908 2422927 CGAAGACTAAGCACA GCTC-CGTAAAAAAAGCGGC CGAAAC GCCGCTTTTTTTATGTGTGC TCTCCCGATTAATGA TERM 2957 2422917 - 2422952 + F 100 -15.7 -2.85847 | opp_overlap 2422913 2422908 2422927, overlap 2422919 2422927 GACTAAGCACAGCTC CGTAAAAAAAGCGGC CGAAAC GCCGCTTTTTTTATG TGTGCTCTCCCGATT TERM 2958 2422919 - 2422950 + F 100 -14.7 -2.97747 | opp_overlap 2422913 2422908 2422927, overlap 2422917 2422927 CTAAGCACAGCTCCG TAAAAAAAGCGGC CGAAAC GCCGCTTTTTTTA TGTGTGCTCTCCCGA TERM 2959 2422942 - 2422927 - f 91 -7.5 -5.40474 | opp_overlap 2422927 2422919 2422917, overlap 2422913 2422908 AGCTCCGTAAAAAAA GCGGC CGAAAC GCCGC TTTTTTTATGTGTGC TERM 2960 2422927 - 2422942 + F 100 -7.5 -5.76633 | opp_overlap 2422913 2422908 2422927, overlap 2422919 2422917 AGCTCCGTAAAAAAA GCGGC CGAAAC GCCGC TTTTTTTATGTGTGC Shewmr4_2037 2422969 - 2424168 + | hypothetical protein Shewmr4_2038 2424213 - 2424773 + | elongation factor P TERM 2961 2424788 - 2424830 + T 100 -14.5 -3.83998 | gap 1, opp_overlap 2424801, overlap 2424789 2424801 ATCGCCCTTCCTACT CCCAGATAAAAAAGCCAGTG CCTA CACTGGCTTTTTTAT-TGGC TTTGCTCTGCCCTAA TERM 2962 2424789 - 2424829 + T 100 -18 -2.90078 | gap 1, opp_overlap 2424801, overlap 2424788 2424801 TCGCCCTTCCTACTC CCAGATAAAAAAGCCAGTG CCTA CACTGGCTTTTTTAT-TGG CTTTGCTCTGCCCTA TERM 2963 2424818 - 2424801 - T 100 -11.3 -5.36441 | opp_overlap 2424789 2424788 2424801 CTCCCAGATAAAAAA GCCAGTG CCTA CACTGGC TTTTTTATTGGCTTT TERM 2964 2424801 - 2424818 + T 100 -11.3 -5.52096 | opp_overlap 2424801, overlap 2424789 2424788 CTCCCAGATAAAAAA GCCAGTG CCTA CACTGGC TTTTTTATTGGCTTT TERM 2965 2425083 - 2425053 - T 78 -9.3 -3.58428 | gap 1, opp_overlap 2425053 2425054 2425061, overlap 2425061 CCTAAACACAAGCAA TA-AAAAAACCAGC CGTA GCTGGTTTTTTATA TTTACTGTATCGCGG TERM 2966 2425053 - 2425083 + T 81 -9.3 -3.88498 | gap 1, opp_overlap 2425053 2425061, overlap 2425054 2425061 CCTAAACACAAGCAA TA-AAAAAACCAGC CGTA GCTGGTTTTTTATA TTTACTGTATCGCGG TERM 2967 2425054 - 2425081 + T 78 -10 -3.53018 | opp_overlap 2425053 2425061, overlap 2425053 2425061 CTAAACACAAGCAAT AAAAAAACCAGC CGTA GCTGGTTTTTTA TATTTACTGTATCGC TERM 2968 2425061 - 2425074 + T 100 -8.1 -5.5762 | opp_overlap 2425061 2425053, overlap 2425054 2425053 CAAGCAATAAAAAAA CCAGC CGTA GCTGG TTTTTTATATTTACT TERM 2969 2425074 - 2425061 - T 100 -8.1 -5.87996 | opp_overlap 2425054 2425053 2425061, overlap 2425053 CAAGCAATAAAAAAA CCAGC CGTA GCTGG TTTTTTATATTTACT Shewmr4_2039 2426482 - 2425100 - | Na+/H+ antiporter NhaC TERM 2970 2426310 - 2426295 - G 70 -9 -3.54779 | ACTAAAATCAACCAA CCGATG GTTT CATCGG CCATGACTTTTAATG TERM 2971 2427663 - 2427649 - g 74 -10 -3.53444 | opp_overlap 2427660, overlap 2427660 TTAGCCGGCGGTAAA GCGGTA CAT TACCGC TGCGATGAAGAGGCG TERM 2972 2428214 - 2428203 - g 82 -7.2 -4.59773 | TGTGAGCGTGAAAAA GCCC AAGG GGGC ACTGTACGCCTTCCC Shewmr4_2040 2427223 - 2428437 + | aminotransferase AlaT TERM 2973 2428482 - 2428506 + F 100 -13.7 -5.05782 | opp_overlap 2428486 TAGGTTAACCTCGAC TAAAGCGATCC ACT GGGTCGCTTTA TTTTTTGCAGTGCGT TERM 2974 2428502 - 2428486 - f 72 -7.9 -3.74747 | opp_overlap 2428482 TTAACCTCGACTAAA GCGATCC ACT GGGTCGC TTTATTTTTTGCAGT Shewmr4_2041 2428692 - 2429279 + | hypothetical protein TERM 2975 2429451 - 2429438 - g 71 -6.7 -4.16943 | GCCTACAGGCCAAAA CCCAA GTGC TTGGG GTGGGCATGAATGAC Shewmr4_2042 2429305 - 2430645 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 2976 2430687 - 2430660 - T 100 -14.4 -3.1855 | opp_overlap 2430660 2430667, overlap 2430667 GCGCTGAACAGGCAA TAAAAAACCACC GCAA GGTGGTTTTTTA TTATCAGTGCGTTCC TERM 2977 2430660 - 2430687 + T 100 -14.4 -3.3785 | opp_overlap 2430660 2430667, overlap 2430667 GCGCTGAACAGGCAA TAAAAAACCACC GCAA GGTGGTTTTTTA TTATCAGTGCGTTCC TERM 2978 2430667 - 2430680 + T 100 -8.1 -5.56673 | opp_overlap 2430667 2430660, overlap 2430660 ACAGGCAATAAAAAA CCACC GCAA GGTGG TTTTTTATTATCAGT TERM 2979 2430680 - 2430667 - T 100 -8.1 -5.49234 | opp_overlap 2430660 2430667, overlap 2430660 ACAGGCAATAAAAAA CCACC GCAA GGTGG TTTTTTATTATCAGT Shewmr4_2043 2431357 - 2430716 - | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 2980 2431138 - 2431173 + g 91 -11.2 -4.31692 | gap 1, opp_overlap 2431150, overlap 2431139 CATTTAAAATGGTAC CCGCGCCAACAAGTGCC TCA GGCACTTCTTGG-GCGA TTTTAGTGATAGCTT TERM 2981 2431139 - 2431172 + g 89 -14.7 -3.18292 | gap 1, opp_overlap 2431150, overlap 2431138 ATTTAAAATGGTACC CGCGCCAACAAGTGCC TCA GGCACTTCTTGG-GCG ATTTTAGTGATAGCT TERM 2982 2431162 - 2431150 - G 70 -9.1 -3.61715 | opp_overlap 2431139 2431138 TACCCGCGCCAACAA GTGCC TCA GGCAC TTCTTGGGCGATTTT Shewmr4_2044 2433204 - 2431378 - | phosphogluconate dehydratase Shewmr4_2045 2433915 - 2433217 - | 6-phosphogluconolactonase Shewmr4_2046 2435397 - 2433925 - | glucose-6-phosphate 1-dehydrogenase Shewmr4_2047 2435710 - 2436564 + | DNA-binding transcriptional regulator HexR TERM 2983 2437009 - 2436998 - g 91 -4.4 -5.66338 | opp_overlap 2436998 AAAGACAACAAAAAA GTTC AACT GAAC TTAGGTCAAGCCTAC Shewmr4_2048 2436749 - 2438188 + | pyruvate kinase TERM 2984 2438280 - 2438251 - T 100 -12.3 -4.67904 | opp_overlap 2438257, overlap 2438257 CATCAAGCTTAAAAA CAAAAACCACCTC AATT GAGGTGGTTTTTT ATATCTTGTCAGGCT TERM 2985 2438274 - 2438257 - T 100 -11.3 -5.61881 | opp_overlap 2438257, overlap 2438251 GCTTAAAAACAAAAA CCACCTC AATT GAGGTGG TTTTTTATATCTTGT TERM 2986 2438257 - 2438274 + T 100 -11.3 -5.48787 | opp_overlap 2438251 2438257 GCTTAAAAACAAAAA CCACCTC AATT GAGGTGG TTTTTTATATCTTGT Shewmr4_2049 2440607 - 2438328 - | acyl-CoA dehydrogenase TERM 2987 2438479 - 2438489 + g 76 -8.2 -4.22591 | overlap 2438472 2438488 GCTGGTAACTCACCG GCGC GTT GCGC TTTCTTGAGCTTCTT TERM 2988 2439125 - 2439141 + g 83 -10.1 -4.18018 | opp_overlap 2439122 GCGAGTCGAAACGCT CGAGCGC ATC GTGCTCG TTTTCCATCGCCGCG TERM 2989 2440265 - 2440245 - G 74 -2.5 -5.06451 | overlap 2440247 GATCAGCGCAAAAAA GCCTTCTTT CTT AAAGTAGTC CCACAGCTCTGGTGG Shewmr4_2050 2441261 - 2440623 - | TetR family transcriptional regulator Shewmr4_2051 2441480 - 2443342 + | peptidyl-dipeptidase A TERM 2990 2443415 - 2443443 + T 100 -13.3 -4.67234 | opp_overlap 2443420, overlap 2443420 GAAAATGTAACCGAT AAAAATGCCCAAC GAT GTTGGGCATTTTC TTTTTAAGCTTCGGT TERM 2991 2443438 - 2443420 - T 100 -13.2 -4.91712 | opp_overlap 2443420 2443415 TGTAACCGATAAAAA TGCCCAAC GAT GTTGGGCA TTTTCTTTTTAAGCT TERM 2992 2443420 - 2443438 + T 100 -13.2 -5.27023 | opp_overlap 2443420, overlap 2443415 TGTAACCGATAAAAA TGCCCAAC GAT GTTGGGCA TTTTCTTTTTAAGCT Shewmr4_2052 2444103 - 2443513 - | Smr protein/MutS2 TERM 2993 2443977 - 2443961 - G 78 -10.1 -3.94188 | ATGCAGGCTAAATAA GCCTCGC GTT GCAAGGC ATCACGGCGCTGAAG Shewmr4_2053 2444236 - 2444814 + | hypothetical protein TERM 2994 2444873 - 2444859 - g 86 -7.1 -4.96762 | GACACACGACAAAAA CTGCC CTTGC GGCAG CCAGAAATCCTACCA Shewmr4_2054 2444842 - 2445336 + | SecC motif-containing protein TERM 2995 2445387 - 2445350 - T 100 -15.9 -2.92425 | opp_overlap 2445355 2445360, overlap 2445355 2445360 AACCAAGTCCACAGA TAAAACAAAAGGCAATC GATT GATTGCCTTTTGTTTTT ATATCACCTGTACGA TERM 2996 2445382 - 2445355 - T 100 -15.8 -4.61199 | opp_overlap 2445355 2445360, overlap 2445350 2445360 AGTCCACAGATAAAA CAAAAGGCAATC GATT GATTGCCTTTTG TTTTTATATCACCTG TERM 2997 2445355 - 2445382 + T 100 -15.8 -4.9792 | opp_overlap 2445355 2445350 2445360, overlap 2445360 AGTCCACAGATAAAA CAAAAGGCAATC GATT GATTGCCTTTTG TTTTTATATCACCTG TERM 2998 2445377 - 2445360 - T 100 -9.9 -5.24647 | opp_overlap 2445360 2445355, overlap 2445355 2445350 ACAGATAAAACAAAA GGCAATC GATT GATTGCC TTTTGTTTTTATATC TERM 2999 2445360 - 2445377 + T 100 -9.9 -5.38839 | opp_overlap 2445355 2445350 2445360, overlap 2445355 ACAGATAAAACAAAA GGCAATC GATT GATTGCC TTTTGTTTTTATATC Shewmr4_2055 2447599 - 2445416 - | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) TERM 3000 2445915 - 2445905 - G 74 -2.4 -5.14563 | overlap 2445906 GTTTCCACTAAAAAA CTGC CGC GCCG ACACATTAACATGCA TERM 3001 2446222 - 2446253 + g 88 -3.6 -5.61881 | opp_overlap 2446223, overlap 2446217 2446223 TAAAAGCACTGAGCA AGGCACTGTTAAAC ACTT GAATAGCAGTGCCC TTTTTCTTTTTCGCG Shewmr4_2056 2448078 - 2447791 - | hypothetical protein Shewmr4_2057 2448805 - 2448317 - | hypothetical protein TERM 3002 2449489 - 2449474 - R 100 -8.2 -5.8187 | opp_overlap 2449474 TAGCCAATAAAAAAA CGCCCC ATTC GGAGCG TTAAATAACAGTGCA Shewmr4_2058 2450189 - 2449521 - | radical activating enzyme TERM 3003 2450898 - 2450885 - g 76 -8.1 -4.15222 | ATGTGGCTCAACAAA GCCCA AACC TGGGC GCTGGCCGATAAATA Shewmr4_2059 2450378 - 2451097 + | queuosine biosynthesis protein QueC Shewmr4_2060 2451094 - 2451708 + | rhomboid family protein TERM 3004 2451740 - 2451776 + T 100 -13.2 -4.07885 | gap 1, opp_overlap 2451717 2451745, overlap 2451745 GACTATTGAGTCAAT AAAAAGCCGCCTAACAC TGTC GTGTT-GGCGGCTTTTA TTTTGCCGAGAACTA TERM 3005 2451745 - 2451771 + T 100 -13.1 -5.07652 | gap 1, opp_overlap 2451745, overlap 2451740 TTGAGTCAATAAAAA GCCGCCTAACAC TGTC GTGTT-GGCGGC TTTTATTTTGCCGAG TERM 3006 2451771 - 2451745 - T 100 -13.1 -5.10461 | gap 1, opp_overlap 2451745 2451740 TTGAGTCAATAAAAA GCCGCCTAACAC TGTC GTGTT-GGCGGC TTTTATTTTGCCGAG Shewmr4_2061 2453876 - 2451855 - | excinuclease ABC subunit B Shewmr4_2062 2454791 - 2454588 - | hypothetical protein TERM 3007 2455046 - 2455032 - H 73 -5.6 -4.46212 | GTTTTGACCACAAAA GCATCG ATT CGTTGC CACTCAAGTAAACTT TERM 3008 2456522 - 2456512 - g 70 -3.2 -4.88407 | TCAGGCAATCAAAAA TGCC ATC GACA GTACCCAACAATTGG Shewmr4_2063 2456132 - 2458036 + | diguanylate cyclase/phosphodiesterase TERM 3009 2458180 - 2458208 + G 95 -11.9 -4.23781 | AGTGAATATCTCCTG TTGTTGATCAGCA CAG TGCTGGTTAACAA TTTCGTTTTAGTGAA Shewmr4_2064 2458162 - 2458740 + | Na(+)-translocating NADH-quinone reductase subunit E Shewmr4_2065 2458741 - 2459322 + | electron transport complex protein RnfB TERM 3010 2460753 - 2460742 - g 78 -2.2 -5.29445 | CTCGAAGAAGAAAAA CTCG CCCG CGAA GCCAAGGCTAAGGAA TERM 3011 2460877 - 2460854 - g 70 -11 -2.60032 | overlap 2460853 2460852 2460856 TCGCGGCCAAAAAGG CAGCTGCGGC AGAA ACCACAGCTG ATAACACGCAGGTCG TERM 3012 2460995 - 2460982 - g 79 -8.1 -4.29326 | GCTAAAGCCAAGAAA GCTGC CGCT GCAGC TCAAAGTGCGGATGA TERM 3013 2461163 - 2461147 - g 78 -2.1 -5.22039 | overlap 2461113 2461148 GCCAAAGCGAAAAAA GCGGCGT TGA AGGCCGA CTCGGATCCCAATAG TERM 3014 2461312 - 2461300 - g 100 -6.9 -5.2696 | GCAAAAGCCAAAAAA GCCGC CGC GCAGC AAGCTGAATCAACTG Shewmr4_2066 2459326 - 2461755 + | electron transport complex protein RnfC TERM 3015 2461755 - 2461779 + F 73 -8.5 -3.59315 | opp_overlap 2461753 2461749 2461755 CGACGCAAATGAATA GCACTGCGGGT TTT AACCTCAGTGC TTTAAAAATGATTAG TERM 3016 2461934 - 2461946 + G 79 -6.9 -4.62069 | GTTACCCGGCCTTGT GGTGC AAT GCGCC TTTTTCGGCTGGGGC TERM 3017 2462038 - 2462025 - g 70 -8.1 -3.72576 | GCCGCGGTGATGAAA CTGCG TAAC CGCAG CATCAAAGCAAGCTT Shewmr4_2067 2461836 - 2462885 + | electron transport complex, RnfABCDGE type, D subunit TERM 3018 2463338 - 2463324 - g 71 -7.1 -4.24342 | TCGCCCACCAAGAAA CCCCA GGCCT TGGGG ATAAAATCGATTTAC Shewmr4_2068 2462951 - 2463577 + | electron transport complex protein RnfG Shewmr4_2069 2463570 - 2464268 + | SoxR-reducing system protein RsxE TERM 3019 2464317 - 2464296 - f 81 -11.7 -2.75803 | opp_overlap 2464296, overlap 2464285 2464287 ATAACAGCTTAAGTA GTGGGTTTA GCGT TAAACCCAC TACTTCCAAGGATCA TERM 3020 2464296 - 2464317 + F 80 -11.7 -2.71364 | opp_overlap 2464285 2464287 2464296 ATAACAGCTTAAGTA GTGGGTTTA GCGT TAAACCCAC TACTTCCAAGGATCA TERM 3021 2464508 - 2464481 - g 82 -10.6 -3.9392 | TGTGAGCGTAAATAA GGCGACTGATAA ACTG TTTCCAGTCGCC AATACCGCCCACAGT Shewmr4_2070 2464335 - 2464976 + | DNA-(apurinic or apyrimidinic site) lyase / endonuclease III Shewmr4_2071 2465404 - 2465138 - | hypothetical protein Shewmr4_2072 2466470 - 2465553 - | LysR family transcriptional regulator Shewmr4_2073 2466667 - 2467899 + | radical SAM domain-containing protein TERM 3022 2469544 - 2469527 - g 76 -6.3 -4.66953 | GGAAGACTCTAAAAA GTTCGCA ACTC TGCAAAC TGATAAATGGGAACT Shewmr4_2074 2467905 - 2470274 + | sulfatase TERM 3023 2470331 - 2470301 - T 84 -9.8 -3.90291 | opp_overlap 2470301 2470306, overlap 2470306 AGTTGTTTAACCAAA GAAAAGGCCATCAA AAT TAGATGGCCTTTTA CTTTCAACCCCACAA TERM 3024 2470301 - 2470331 + T 71 -9.8 -2.71712 | opp_overlap 2470301 2470306, overlap 2470306 AGTTGTTTAACCAAA GAAAAGGCCATCAA AAT TAGATGGCCTTTTA CTTTCAACCCCACAA TERM 3025 2470306 - 2470326 + T 100 -9.7 -4.54727 | opp_overlap 2470301 2470306, overlap 2470301 TTTAACCAAAGAAAA GGCCATCAA AAT TAGATGGCC TTTTACTTTCAACCC TERM 3026 2470326 - 2470306 - T 100 -9.7 -4.99947 | opp_overlap 2470306 2470301, overlap 2470301 TTTAACCAAAGAAAA GGCCATCAA AAT TAGATGGCC TTTTACTTTCAACCC Shewmr4_2075 2470957 - 2470493 - | hypothetical protein Shewmr4_2076 2472126 - 2470957 - | PepSY-associated TM helix domain-containing protein TERM 3027 2472067 - 2472053 - G 73 -5 -4.614 | overlap 2472065 GTTAAGCAGATAAAA CTGAAT AAA ATCCAG ATGGGCAAAGATACC Shewmr4_2077 2472356 - 2473177 + | beta-lactamase domain-containing protein Shewmr4_2078 2473432 - 2474388 + | hypothetical protein Shewmr4_2079 2475277 - 2474399 - | hypothetical protein Shewmr4_2080 2476736 - 2475513 - | AraC family transcriptional regulator Shewmr4_2081 2477701 - 2476736 - | diguanylate cyclase TERM 3028 2478056 - 2478078 + H 75 -7.1 -4.27316 | TAAATAAACACTCTC TAACCCATT CTAAA GATGGGTTA TTTTCACTTCAAACG TERM 3029 2478148 - 2478170 + H 71 -7 -4.18762 | opp_overlap 2478151 CAACGCCTTCTTATA TGACGCTGAT TCT GTAAGCGTCA TTTTGGCTCAGCCTT TERM 3030 2478598 - 2478612 + G 76 -3.4 -5.13354 | opp_overlap 2478599, overlap 2478599 CCTTAGCCAACAAGC AGGCCG TGA TGGCCG TTTCTTTTTTGTCGG TERM 3031 2479574 - 2479558 - g 70 -4.4 -4.71426 | GCCGCAGCAAGAAAA TGCCCT CAGCC AAGGCA AAACCACCCGCTCGC Shewmr4_2082 2478353 - 2481181 + | TonB-dependent receptor TERM 3032 2482261 - 2482248 - g 78 -2.3 -5.37345 | opp_overlap 2482259, overlap 2482250 CTCAACCAGAAAAAA GCCTA GTGC TTGGC ACCAACAAACGTTGG TERM 3033 2482393 - 2482382 - g 87 -7.2 -5.00616 | CTGGGCGGTAAAAAA CGCG ATAT CGCG GTGGCGACCTTAAGA TERM 3034 2482603 - 2482622 + G 79 -12.2 -3.21099 | opp_overlap 2482605 GGCAAATGGCCCAAG TATCGCGC TGGT GCGCGATA TTCATACTCCAAGCC TERM 3035 2482841 - 2482831 - g 79 -6.8 -4.62783 | TATTCACGGTAAAAA GCAG GAT CTGC TGGTGGTCTCCAGCC Shewmr4_2083 2481206 - 2483143 + | 3-phytase TERM 3036 2483186 - 2483214 + F 86 -8.8 -4.27584 | opp_overlap 2483191, overlap 2483191 TCTGGTTAGACGAAT GATAACCGAGCC CGAGT GGCTCGGTTTGC TTTTGCCTTGAACCT TERM 3037 2483209 - 2483191 - f 89 -11.7 -3.55487 | opp_overlap 2483191 2483186 TTAGACGAATGATAA CCGAGCC CGAGT GGCTCGG TTTGCTTTTGCCTTG TERM 3038 2483191 - 2483209 + F 100 -11.7 -4.23528 | opp_overlap 2483191, overlap 2483186 TTAGACGAATGATAA CCGAGCC CGAGT GGCTCGG TTTGCTTTTGCCTTG TERM 3039 2484831 - 2484809 - g 84 -11.4 -3.94 | opp_overlap 2484808 2484807 TGAATCCTTAAATAA TGCCCTCAAA GAT TTTGAAGGCA CATTGATTTTCGTTA Shewmr4_2084 2483373 - 2484965 + | ABC transporter related TERM 3040 2484988 - 2485003 + T 74 -7.6 -3.98083 | opp_overlap 2484988 GCTGTTGTGTGATAA GCCTTT TTTA AAAGGC TTTATCCATTACCTA TERM 3041 2485052 - 2485080 + T 79 -3 -5.36441 | opp_overlap 2485052 GTTACCTAATAAAAA GACGCTACACTC TACTC GAGATAAGCGTC TTTTTTATATCCCAC TERM 3042 2485080 - 2485052 - T 75 -3 -5.10461 | opp_overlap 2485052 GTTACCTAATAAAAA GACGCTACACTC TACTC GAGATAAGCGTC TTTTTTATATCCCAC Shewmr4_2085 2485584 - 2485135 - | activator of Hsp90 ATPase family protein Shewmr4_2086 2486850 - 2485696 - | hypothetical protein Shewmr4_2087 2487203 - 2488837 + | response regulator receiver modulated diguanylate cyclase TERM 3043 2489069 - 2489094 + T 88 -12.7 -2.73468 | overlap 2489086 2489089 GACGTTGTAAGTGCT TTTAGTCTCGC TTAA GCGAGGCTAAA TAATTGAGCATCTTA Shewmr4_2088 2490125 - 2489070 - | response regulator receiver modulated CheB methylesterase TERM 3044 2489694 - 2489719 + g 71 -6.1 -4.35926 | gap 1, overlap 2489696 2489701 ATGGCTAGGTTGCAC CACGACG-GCAG GAG CTGCTCGTTGGG TTTTCAGTTTAGCGT Shewmr4_2089 2490749 - 2490129 - | chemoreceptor glutamine deamidase CheD Shewmr4_2090 2491580 - 2490750 - | MCP methyltransferase, CheR-type Shewmr4_2091 2493551 - 2491581 - | methyl-accepting chemotaxis sensory transducer TERM 3045 2492590 - 2492578 - G 70 -9.1 -3.53563 | ATACGCGTGGTTAAA TCGCC TTC GGCGA GCGCCATCAACACCC Shewmr4_2092 2494069 - 2493557 - | CheW protein Shewmr4_2093 2496294 - 2494084 - | CheA signal transduction histidine kinases Shewmr4_2094 2496678 - 2496313 - | response regulator receiver protein Shewmr4_2095 2498382 - 2496679 - | response regulator receiver protein TERM 3046 2497258 - 2497275 + g 74 -3.5 -4.91084 | overlap 2497259 ATCTGTGATCTCATG TTCAAAA ATGG TTTTGAG TTTTGTTCTTAGGTA Shewmr4_2096 2498676 - 2498383 - | anti-sigma-factor antagonist Shewmr4_2097 2499828 - 2498692 - | methyl-accepting chemotaxis sensory transducer TERM 3047 2501482 - 2501462 - g 82 -6.8 -4.8622 | CGCCGTAACCAAAAA CTGCTGCA GGAAG TGCCGCAG TCGATCCCCGACAAT Shewmr4_2098 2500055 - 2502796 + | CoA-binding domain-containing protein TERM 3048 2502857 - 2502835 - T 100 -9.9 -5.64304 | gap 1, opp_overlap 2502835 GAACACAATAAAAAA CGCCGCA-CT CAAA AGATGCGGCG TTTTTATTTATCATG TERM 3049 2502835 - 2502857 + T 100 -9.9 -5.40464 | gap 1, opp_overlap 2502835 GAACACAATAAAAAA CGCCGCACTC AAAA GA-TGCGGCG TTTTTATTTATCATG Shewmr4_2099 2504503 - 2502920 - | EmrB/QacA family drug resistance transporter TERM 3050 2504033 - 2504011 - G 74 -9.8 -3.55761 | CACCCACTCCCCAAA GGGCCATGGC CGA ACCATGGCGC TCTGGCGGGTAACTG Shewmr4_2100 2505555 - 2504500 - | secretion protein HlyD family protein Shewmr4_2101 2506039 - 2505611 - | MarR family transcriptional regulator TERM 3051 2506086 - 2506048 - R 84 -11.2 -3.65224 | opp_overlap 2506061, overlap 2506049 ATGCCATTTTAATAA GTCATCCACATAGTAAGC ATT GCTTATTATATGGATGAT AAAAGATGTAAAGCA TERM 3052 2506085 - 2506049 - R 100 -14.7 -2.78813 | opp_overlap 2506061, overlap 2506048 TGCCATTTTAATAAG TCATCCACATAGTAAGC ATT GCTTATTATATGGATGA TAAAAGATGTAAAGC TERM 3053 2506172 - 2506187 + r 74 -4.8 -4.86621 | opp_overlap 2506181 ATAACCCATTGATCA TGTTTA ACAT TAAACA TTTTTAATTAAAGGT Shewmr4_2102 2507361 - 2506435 - | diguanylate cyclase TERM 3054 2507490 - 2507471 - R 100 -12.2 -5.04249 | opp_overlap 2507471 CGCGCAAAAAACAAA GGAGGATG TCGC CATCCTCC TTCATCTATTCACAA TERM 3055 2507471 - 2507490 + r 89 -12.2 -3.37493 | opp_overlap 2507471 CGCGCAAAAAACAAA GGAGGATG TCGC CATCCTCC TTCATCTATTCACAA Shewmr4_2103 2509142 - 2507517 - | sulfatase TERM 3056 2508904 - 2508885 - G 70 -2.1 -5.01732 | gap 1, overlap 2508887 2508888 AAGCGCGGCAAAAAA CAC-GCTC GAGGA GAGCAGCG TAAGAATGATGAAAA TERM 3057 2509324 - 2509299 - R 87 -5.4 -5.52384 | TGCGGATTAAAAAAA CGGCCGAACC TGAATG AATTCGACCG TTTTTTGCTCCCCAA Shewmr4_2104 2511489 - 2509396 - | prolyl oligopeptidase TERM 3058 2511987 - 2512002 + r 100 -11.8 -3.77196 | opp_overlap 2511987 CGCCCGCCAAAAAAA GCGCCC ATCG GGGCGC TTTAATCAATACTGA TERM 3059 2512002 - 2511987 - R 100 -11.8 -5.40072 | opp_overlap 2511987 CGCCCGCCAAAAAAA GCGCCC ATCG GGGCGC TTTAATCAATACTGA Shewmr4_2105 2512499 - 2512038 - | MarR family transcriptional regulator Shewmr4_2106 2513713 - 2512499 - | cation diffusion facilitator family transporter TERM 3060 2514060 - 2514021 - H 100 -15.2 -4.07877 | overlap 2514023 2514027 CTATGGGACAAATAA CACAAAGGCGCTTAAATC AATC GACTTAAGCGCCTCTGCA TGGGAAGGGATTTGA TERM 3061 2514058 - 2514023 - H 100 -17.8 -3.63097 | overlap 2514021 2514027 ATGGGACAAATAACA CAAAGGCGCTTAAATC AATC GACTTAAGCGCCTCTG CATGGGAAGGGATTT TERM 3062 2514054 - 2514027 - H 100 -15 -4.42743 | overlap 2514023 2514021 GACAAATAACACAAA GGCGCTTAAATC AATC GACTTAAGCGCC TCTGCATGGGAAGGG Shewmr4_2107 2514443 - 2514853 + | lactoylglutathione lyase TERM 3063 2514915 - 2514877 - T 100 -19.1 -2.87132 | opp_overlap 2514878 2514883, overlap 2514883 TCTTCCCGCCAGATA TGAAAACGGCGTTTGCA TGCCC TGCAAACGCCGTTTTCT TTACTCATTGATAAA TERM 3064 2514878 - 2514914 + T 100 -22.6 -3.85704 | opp_overlap 2514877 2514883, overlap 2514883 CTTCCCGCCAGATAT GAAAACGGCGTTTGCA TGCCC TGCAAACGCCGTTTTC TTTACTCATTGATAA TERM 3065 2514909 - 2514883 - T 100 -16.7 -4.39166 | opp_overlap 2514878 2514883, overlap 2514877 CGCCAGATATGAAAA CGGCGTTTGCA TGCCC TGCAAACGCCG TTTTCTTTACTCATT TERM 3066 2514883 - 2514909 + T 100 -16.7 -4.96388 | opp_overlap 2514883 2514877, overlap 2514878 CGCCAGATATGAAAA CGGCGTTTGCA TGCCC TGCAAACGCCG TTTTCTTTACTCATT Shewmr4_2108 2515593 - 2514946 - | putative sulfite oxidase subunit YedZ Shewmr4_2109 2516734 - 2515700 - | putative sulfite oxidase subunit YedY TERM 3067 2515889 - 2515878 - G 74 -4.4 -4.84761 | ACATTGGCATAAAAA CCAT ACTC ATGG GGCGCGAGTTGATTC TERM 3068 2517460 - 2517439 - g 80 -4.5 -5.1675 | gap 1, overlap 2517441 CGATGCAGGAAAAAA TC-GCCACTT TAG AAATGGCCGA AGTGCGCCTGCAAAC Shewmr4_2110 2517009 - 2518574 + | hypothetical protein TERM 3069 2518713 - 2518741 + G 85 -11.7 -3.67864 | opp_overlap 2518711, overlap 2518714 2518736 TCCAGCGCAATTATC ATCGCAGGGGCAT TCA ATGCCTCTGCGGC TTTCGCGTTAACTTC TERM 3070 2518714 - 2518740 + G 84 -15.2 -2.80236 | opp_overlap 2518711, overlap 2518713 2518736 CCAGCGCAATTATCA TCGCAGGGGCAT TCA ATGCCTCTGCGG CTTTCGCGTTAACTT TERM 3071 2519115 - 2519101 - g 72 -8.5 -3.84719 | AGGGCGAAACCCAAA CCGCC TACAC GGCGG CGCAGTCACTATGGG TERM 3072 2520168 - 2520179 + G 74 -3.6 -5.04601 | opp_overlap 2520151 CGCGCCATTAGCCGC CGCG AAAG TGCG TTTTTCCTTTATGCG TERM 3073 2520282 - 2520264 - g 86 -6.6 -5.03314 | GCTACGGCCAAAAAA CACGGTGC CAA GTACCGCG ATCCTAAGGATCTGT Shewmr4_2111 2518668 - 2520593 + | lytic transglycosylase, catalytic TERM 3074 2520630 - 2520659 + F 100 -18.7 -4.58395 | opp_overlap 2520633 GAGTAACTGGGATCA CAATCGAGGTGGC TTAA GCCGCCTCGATTG TTTTTACAGCATCAA TERM 3075 2520656 - 2520633 - f 100 -12.4 -3.41527 | opp_overlap 2520630 TAACTGGGATCACAA TCGAGGTGGC TTAA GCCGCCTCGA TTGTTTTTACAGCAT Shewmr4_2112 2520808 - 2521509 + | diguanylate phosphodiesterase Shewmr4_2113 2522475 - 2521822 - | hypothetical protein Shewmr4_2114 2524093 - 2523170 - | IS4 family transposase Shewmr4_2115 2525178 - 2524342 - | hypothetical protein TERM 3076 2525490 - 2525460 - H 71 -9.9 -2.61144 | opp_overlap 2525459, overlap 2525459 2525457 CTAGTCCTGAAATAC GTTGACATAAAGA GGACT TCTTTATGACAAC ATCAATTAACTCAAG Shewmr4_2116 2525483 - 2525878 + | transposase TERM 3077 2526497 - 2526477 - g 71 -11.1 -2.79327 | opp_overlap 2526477, overlap 2526476 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA TERM 3078 2526477 - 2526497 + G 79 -11.1 -3.54029 | opp_overlap 2526477 2526476 TCAGGCGAGCCAAAT CCAGCCGTC AAT GACGGATGG TTATGATTGCTACCA Shewmr4_2117 2525908 - 2526711 + | integrase catalytic subunit TERM 3079 2526708 - 2526688 - T 100 -12.6 -4.73682 | GTGCACAATAGAAAA GGCCAGCT ACTGG AGCTGGCC TAAAAACTGTCAACC Shewmr4_2118 2528332 - 2526860 - | RNA-directed DNA polymerase TERM 3080 2529154 - 2529184 + H 72 -9.9 -2.82279 | gap 1, opp_overlap 2529163, overlap 2529163 TTTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTATATTTAATAG TERM 3081 2529174 - 2529163 - H 73 -7.2 -4.09511 | opp_overlap 2529154 2529163 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTA TERM 3082 2529163 - 2529174 + H 81 -7.2 -4.60487 | opp_overlap 2529163, overlap 2529154 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTA Shewmr4_2119 2529734 - 2530216 + | hypothetical protein Shewmr4_2120 2530695 - 2531714 + | DNA-repair protein TERM 3083 2531785 - 2531772 - T 70 -5.3 -4.48583 | AAGCAATAGAATAAA TCAGT AAAA ACTGA TGCTAGTACATAAAT TERM 3084 2531891 - 2531853 - T 82 -6.8 -4.84219 | gap 1, opp_overlap 2531853 AAACCATAAAATAAA GGGCTACAGTGGAGATT AATCGA AATCGTC-CTGTAGCCC TTCTGGTATGCGGTT TERM 3085 2531853 - 2531891 + T 73 -9 -3.47345 | gap 1, opp_overlap 2531853 AAACCATAAAATAAA GGGCTACAGTGGAGATT AATCGA AATCGTC-CTGTAGCCC TTCTGGTATGCGGTT Shewmr4_2121 2532917 - 2531982 - | hypothetical protein TERM 3086 2532307 - 2532295 - G 72 -4.1 -4.85599 | CCTACGGCATAAAAA CCATC AGG AATGG TGCCGGGAATAAAGT Shewmr4_2122 2533431 - 2532973 - | GCN5-related N-acetyltransferase TERM 3087 2533493 - 2533511 + r 100 -13.2 -3.53761 | opp_overlap 2533493 TCCTAGTATTAAAAA GCCAGAAC AGG GTTCTGGC TTTGGCAACAGGTTA TERM 3088 2533511 - 2533493 - R 100 -13.2 -4.77036 | opp_overlap 2533493 TCCTAGTATTAAAAA GCCAGAAC AGG GTTCTGGC TTTGGCAACAGGTTA Shewmr4_2123 2535632 - 2533569 - | peptidase S9 prolyl oligopeptidase TERM 3089 2535362 - 2535386 + g 74 -10 -3.61103 | CATCGTGCTCAGTAC CCGCTGCAGA AGTGA TCTGCATCGG TTTCGCGTCCGCTTG TERM 3090 2535667 - 2535646 - R 86 -11.7 -3.34517 | overlap 2535644 ATCTTTTGTTAAACA CATTCGGTA GTTG TACCGAATG AACGGTCAAAACGGT TERM 3091 2535730 - 2535765 + r 100 -10.4 -5.60993 | opp_overlap 2535732, overlap 2535732 CACTAACGAAACAAA AACGCTCAAGCAAGCC AAAA GGCGTACTTGAGCGTA TTTTTTTGTGACAAA TERM 3092 2535763 - 2535732 - R 100 -15.2 -5.38326 | opp_overlap 2535730 2535732 CTAACGAAACAAAAA CGCTCAAGCAAGCC AAAA GGCGTACTTGAGCG TATTTTTTTGTGACA TERM 3093 2535732 - 2535763 + r 100 -13 -4.45201 | opp_overlap 2535732, overlap 2535730 CTAACGAAACAAAAA CGCTCAAGCAAGCC AAAA GGCGTACTTGAGCG TATTTTTTTGTGACA Shewmr4_2124 2537439 - 2535895 - | fumarase TERM 3094 2536867 - 2536886 + g 76 -4.2 -5.00616 | gap 1 CGGTGGACACCAGCC CGC-GCCCA TGG TTGGCAGCG TTTTTTCAACCCAAG TERM 3095 2538434 - 2538419 - g 72 -8.2 -3.82499 | ACCAAACCGATTAAA GGCACG CTGC CGCGCC ATAGCGACCCGATGC Shewmr4_2125 2537561 - 2538964 + | aminodeoxychorismate synthase, subunit I Shewmr4_2126 2538990 - 2539577 + | NUDIX hydrolase Shewmr4_2127 2539937 - 2539602 - | hypothetical protein asnC 2540089 - 2541489 + | asparaginyl-tRNA synthetase TERM 3096 2541520 - 2541533 + F 100 -9.5 -5.4505 | opp_overlap 2541520 ACACATACTTTAAAA CGCGC CTCG GCGCG TTTTTTATTGCCCAG TERM 3097 2541533 - 2541520 - f 85 -9.5 -4.18802 | opp_overlap 2541520 ACACATACTTTAAAA CGCGC CTCG GCGCG TTTTTTATTGCCCAG ddl 2541753 - 2542763 + | D-alanyl-alanine synthetase A TERM 3098 2542769 - 2542791 + T 100 -12 -5.10029 | opp_overlap 2542772, overlap 2542772 GGCTAAGTGATAAAC AAAGAGCGCC TAT GGCGCTCTTC TTTTTTGAGGTTAGT TERM 3099 2542788 - 2542772 - T 100 -13.7 -4.59089 | opp_overlap 2542769 2542772 TAAGTGATAAACAAA GAGCGCC TAT GGCGCTC TTCTTTTTTGAGGTT TERM 3100 2542772 - 2542788 + T 100 -13.7 -4.63993 | opp_overlap 2542772, overlap 2542769 TAAGTGATAAACAAA GAGCGCC TAT GGCGCTC TTCTTTTTTGAGGTT Shewmr4_2130 2545074 - 2542816 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3101 2542877 - 2542864 - G 78 -3.8 -5.1848 | AAGTAACTCAAAAAA TGCC GCCTTG GGCA TGGGCTTATAAAAGA TERM 3102 2543048 - 2543066 + g 76 -6.1 -4.6038 | opp_overlap 2543048 CCTTCATCCAATCTA TCGATAA AGCTC TTATCGA TTTTGATTTGATCTA TERM 3103 2545208 - 2545164 - R 100 -17.5 -4.7497 | opp_overlap 2545172 TTTAGGTATTAAAAA GCACTAAAGCAACTTTTCAAT TCG AATGAAAACTTGCTTTAGTGC GAGATATTACGAAGG Shewmr4_2131 2546439 - 2545225 - | Fmu (Sun) domain-containing protein TERM 3104 2545352 - 2545337 - G 70 -2.4 -5.00616 | TTTTCCGCTAAAAAA GCATCC ACTT GGCCGC GGTTTTCACAGGGGA TERM 3105 2546551 - 2546568 + r 100 -11.3 -4.38712 | opp_overlap 2546551 AAGACCAATAAAAAA GCGATCC AAGG GGATCGC TTTTATCGAAATGGC TERM 3106 2546568 - 2546551 - R 100 -11.3 -5.54885 | opp_overlap 2546551 AAGACCAATAAAAAA GCGATCC AAGG GGATCGC TTTTATCGAAATGGC Shewmr4_2132 2547863 - 2546592 - | glucose/galactose transporter TERM 3107 2546647 - 2546632 - G 73 -3.2 -4.92791 | TAGAACAGAATAAAA CCGTAG CACA CCACAG GCAGAATAAAGGCCA TERM 3108 2547367 - 2547347 - G 79 -6.8 -4.62203 | overlap 2547361 CTGAAAGAATCAAAA TCGAGCCA AAAAA TGGCGCGA CCGTCGTCCCTAAAG TERM 3109 2547962 - 2547929 - R 71 -9.7 -2.57132 | gap 1, opp_overlap 2547957, overlap 2547928 2547931 GCGTTTTCGTACAAC GACAGGCAGTCACA ATCAACG TGTG-CTGCCCGTC CGAACGAGTGTTATG Shewmr4_2133 2549611 - 2547989 - | alpha amylase, catalytic region Shewmr4_2134 2550110 - 2552929 + | TonB-dependent receptor TERM 3110 2552940 - 2552972 + F 100 -16.5 -4.60487 | opp_overlap 2552945, overlap 2552945 TGTAAGCTGTCATCG TAAAAGCCTGCTTCA CTG TGAAGCAGGCTTTTC TTTTTACCCATAATA TERM 3111 2552967 - 2552945 - f 100 -16.4 -4.13767 | opp_overlap 2552945 2552940 GCTGTCATCGTAAAA GCCTGCTTCA CTG TGAAGCAGGC TTTTCTTTTTACCCA TERM 3112 2552945 - 2552967 + F 100 -16.4 -5.26119 | opp_overlap 2552945, overlap 2552940 GCTGTCATCGTAAAA GCCTGCTTCA CTG TGAAGCAGGC TTTTCTTTTTACCCA TERM 3113 2554641 - 2554671 + G 77 -9 -4.11216 | TGCGTAGCGATTTTC CGGGTGGCTTTGCT AAT AGCAAAGTCAACGG TTTTAGCGGTAAAGG Shewmr4_2135 2553059 - 2555056 + | alpha amylase, catalytic region TERM 3114 2555112 - 2555087 - f 100 -13.3 -3.67775 | overlap 2555088 ATGCTTAGCTAACAA CGCGGCCAAAC CACA GTTTGGCCGCC AAGTCAGTAAAGGAA TERM 3115 2555111 - 2555088 - f 100 -16.8 -2.80344 | overlap 2555087 TGCTTAGCTAACAAC GCGGCCAAAC CACA GTTTGGCCGC CAAGTCAGTAAAGGA TERM 3116 2556450 - 2556428 - g 80 -2.7 -5.31275 | overlap 2556431 TGGCAGGACAAAAAA GTACCGC-GCA GAT CGCCGCGG-AC CAGGCCAAAGTGCAA Shewmr4_2136 2555134 - 2557248 + | alpha amylase, catalytic region TERM 3117 2557285 - 2557314 + F 100 -16.6 -5.00616 | AAATCATAGGTTAGC GCCAGAGTCACA CTTAGT TGTGACTCTGGC TTTTTTAAAACACAC Shewmr4_2137 2557367 - 2557750 + | glyoxalase/bleomycin resistance protein/dioxygenase Shewmr4_2138 2557960 - 2558169 + | hypothetical protein TERM 3118 2558274 - 2558264 - T 74 -6.8 -4.3208 | opp_overlap 2558264 2558263 TCTTAGAATTTAAAA CTGC TTT GCAG GTATTGGCTTATAGC TERM 3119 2558739 - 2558727 - T 78 -10.5 -3.3482 | opp_overlap 2558727 TAACGCCTGAATTAA GCCGC GAA GCGGC GTCGGCTTGAATGAA Shewmr4_2139 2560632 - 2558779 - | hypothetical protein Shewmr4_2140 2561627 - 2560749 - | hypothetical protein TERM 3120 2561427 - 2561395 - G 73 -9.4 -3.76224 | gap 1, opp_overlap 2561405, overlap 2561405 CCTTTATCTACGAAA GGAAAGAAAACTTTG TTAG CAAAG-CTTCTTTCC CATCCAGAAAACAAC TERM 3121 2561418 - 2561405 - G 79 -5.3 -5.04868 | opp_overlap 2561405, overlap 2561395 CGAAAGGAAAGAAAA CTTTG TTAG CAAAG CTTCTTTCCCATCCA TERM 3122 2561787 - 2561756 - R 77 -11 -2.80821 | opp_overlap 2561766, overlap 2561766 CTGCCAAATACACCA TCTTGAAAAACGCG CATG CGCGTTTTTCAAAC CTATTAACTAAAAGC TERM 3123 2561766 - 2561777 + r 81 -7.2 -4.59511 | opp_overlap 2561766 2561756 CACCATCTTGAAAAA CGCG CATG CGCG TTTTTCAAACCTATT TERM 3124 2561777 - 2561766 - R 81 -7.2 -4.60487 | opp_overlap 2561766, overlap 2561756 CACCATCTTGAAAAA CGCG CATG CGCG TTTTTCAAACCTATT Shewmr4_2141 2563266 - 2562418 - | hypothetical protein TERM 3125 2563434 - 2563409 - R 100 -16.3 -4.07133 | opp_overlap 2563413, overlap 2563413 TAGGCTTAGAAACAA CAAAGCCGCAT CGGA ATGCGGCTTTG ACTTAGATAATGACG TERM 3126 2563430 - 2563413 - R 100 -11.3 -4.63048 | opp_overlap 2563413, overlap 2563409 CTTAGAAACAACAAA GCCGCAT CGGA ATGCGGC TTTGACTTAGATAAT TERM 3127 2563413 - 2563430 + r 95 -11.3 -3.77219 | opp_overlap 2563413 2563409 CTTAGAAACAACAAA GCCGCAT CGGA ATGCGGC TTTGACTTAGATAAT def 2563967 - 2563476 - | peptide deformylase Shewmr4_2143 2564160 - 2564618 + | methylated-DNA-(protein)-cysteine S-methyltransferase Shewmr4_2144 2564748 - 2565560 + | hypothetical protein TERM 3128 2565677 - 2565637 - T 100 -15.8 -4.46926 | gap 2, opp_overlap 2565637 2565644, overlap 2565644 CAGCGCAGCACAAAA CACAAAAGGCCAAACGTGAG TGA CTC-CGTTTGGCCTTTT-TG TTTCAGATTTAATTC TERM 3129 2565637 - 2565677 + T 100 -15.8 -3.74178 | gap 2, opp_overlap 2565637 2565644, overlap 2565644 CAGCGCAGCACAAAA CACAAAAGGCCAAACGTGAG TGA CTC-CGTTTGGCCTTTT-TG TTTCAGATTTAATTC TERM 3130 2565671 - 2565644 - T 100 -15 -4.94487 | gap 1, opp_overlap 2565637 2565644, overlap 2565637 GCACAAAACACAAAA GGCCAAACGTGAG TGA CTC-CGTTTGGCC TTTTTGTTTCAGATT TERM 3131 2565644 - 2565671 + T 100 -15 -5.29846 | gap 1, opp_overlap 2565644 2565637, overlap 2565637 GCACAAAACACAAAA GGCCAAACGTGAG TGA CTC-CGTTTGGCC TTTTTGTTTCAGATT Shewmr4_2145 2566505 - 2565726 - | glutamine amidotransferase, class-II TERM 3132 2566787 - 2566801 + G 70 -10 -3.1875 | overlap 2566785 CGCCATGATCTTAGT GCTAGG AGC CCTAGC TTACCTTCGGGTATC fadE 2566749 - 2569196 + | acyl-CoA dehydrogenase TERM 3133 2569246 - 2569224 - T 100 -16.4 -4.90079 | opp_overlap 2569224 ATCTTAATAACAAAA GAGGCACTAC TAT GTAGTGCCTC TTTATTTATCAGCGT TERM 3134 2569224 - 2569246 + T 100 -16.4 -4.55697 | opp_overlap 2569224 ATCTTAATAACAAAA GAGGCACTAC TAT GTAGTGCCTC TTTATTTATCAGCGT Shewmr4_2147 2571327 - 2569315 - | sodium/hydrogen exchanger TERM 3135 2571914 - 2571925 + r 75 -7.2 -4.37092 | opp_overlap 2571902 2571901 ATCCGCCCTATGTCA GGCG ATAA CGCC TTTTATACAAGAAGT Shewmr4_2148 2572837 - 2572130 - | TetR family transcriptional regulator TERM 3136 2573480 - 2573465 - g 74 -6.8 -4.42386 | gap 1, opp_overlap 2573465, overlap 2573466 2573467 GCTTTACCCAGAAAA CTGCCCG ATA CGGGC-G CAGGTATTTGCCAAC Shewmr4_2149 2572908 - 2573792 + | LysR family transcriptional regulator TERM 3137 2573853 - 2573816 - T 95 -12.9 -3.21695 | opp_overlap 2573808, overlap 2573821 TTATCACTAACCGAA TTGAACGTATGCCAACA TAAA TGTTGGCATACGTATAA GTAGGAAATGCCTTT TERM 3138 2573848 - 2573821 - T 100 -17.2 -3.21258 | opp_overlap 2573808, overlap 2573816 ACTAACCGAATTGAA CGTATGCCAACA TAAA TGTTGGCATACG TATAAGTAGGAAATG Shewmr4_2150 2575006 - 2573879 - | hypothetical protein Shewmr4_2151 2576335 - 2575091 - | hypothetical protein TERM 3139 2576548 - 2576522 - R 100 -12.4 -5.47914 | AAAAACCATAAAAAA GCCCCTTAGT CATAACC ACTAAGGGGC ACATAAAGCGAGGAT Shewmr4_2152 2577072 - 2576719 - | tetraheme cytochrome c Shewmr4_2153 2578620 - 2577100 - | flavocytochrome c TERM 3140 2578883 - 2578850 - R 100 -11.9 -4.51174 | opp_overlap 2578856, overlap 2578856 GCATGATAATTAAAA TAAAAATGGCAACAC TAAT GTGCTGCCATTTATA AAATAGAAAGAGAGA TERM 3141 2578877 - 2578856 - R 100 -10.9 -5.54338 | opp_overlap 2578856, overlap 2578850 TAATTAAAATAAAAA TGGCAACAC TAAT GTGCTGCCA TTTATAAAATAGAAA TERM 3142 2578856 - 2578877 + r 78 -8.7 -3.89346 | opp_overlap 2578856 2578850 TAATTAAAATAAAAA TGGCAACAC TAAT GTGCTGCCA TTTATAAAATAGAAA Shewmr4_2154 2579909 - 2578929 - | alcohol dehydrogenase TERM 3143 2582822 - 2582842 + G 70 -8.4 -3.7732 | TACCGATCAATGCGT TGAAACTG GATCG CAGTTTCA TTATTCATATGGCCA Shewmr4_2155 2580979 - 2583072 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3144 2583729 - 2583691 - T 100 -18.4 -4.68545 | opp_overlap 2583698, overlap 2583698 ATTGAATAGATAAAA TCAAAAAGCCCATGCTAT TTA ATAGCATGGGCTTCATGA ATGTTGGCGGAGCGG TERM 3145 2583698 - 2583722 + T 100 -17.3 -3.2218 | opp_overlap 2583698 2583691 AGATAAAATCAAAAA GCCCATGCTAT TTA ATAGCATGGGC TTCATGAATGTTGGC TERM 3146 2583722 - 2583698 - T 100 -17.3 -5.15526 | opp_overlap 2583698, overlap 2583691 AGATAAAATCAAAAA GCCCATGCTAT TTA ATAGCATGGGC TTCATGAATGTTGGC TERM 3147 2583957 - 2584002 + T 86 -12.1 -3.12432 | gap 1, opp_overlap 2583965 2583967, overlap 2583967 TCCACTCAAGTTGCG GTGAATAATACGGTTGAGCGTT CGA AGCG-TCAACCGTTTTTTTCAC TCTATTGCATCGTTT TERM 3148 2583967 - 2583992 + T 100 -9.1 -5.51402 | gap 1, opp_overlap 2583967 2583965, overlap 2583957 TTGCGGTGAATAATA CGGTTGAGCGTT CGA AGCG-TCAACCG TTTTTTTCACTCTAT Shewmr4_2156 2585536 - 2584112 - | hypothetical protein TERM 3149 2584220 - 2584206 - G 74 -11.4 -3.10344 | GCCTCATCTAACATA CGCTGC TCT GCAGCG GCTAGCGCCTGCGCT Shewmr4_2157 2586398 - 2585670 - | DNA polymerase III, epsilon subunit Shewmr4_2158 2586469 - 2586945 + | ribonuclease H Shewmr4_2159 2587881 - 2586967 - | LysR family transcriptional regulator Shewmr4_2160 2588640 - 2587906 - | methyltransferase type 11 Shewmr4_2161 2588725 - 2589612 + | hydroxyacylglutathione hydrolase TERM 3150 2590421 - 2590408 - g 71 -5.3 -4.4648 | ACCTGTACGACAAAA CCAAT AATA ATTGG CTCTATGCGATTGCG Shewmr4_2162 2589864 - 2591411 + | MltD domain-containing protein TERM 3151 2591538 - 2591516 - T 100 -16.4 -5.29846 | opp_overlap 2591516 AATGGCAAACAAAAA GGCAGTAACC CTA GGTTACTGCC TTTTTCATTCGCAAA TERM 3152 2591516 - 2591538 + T 100 -16.4 -4.8622 | opp_overlap 2591516 AATGGCAAACAAAAA GGCAGTAACC CTA GGTTACTGCC TTTTTCATTCGCAAA Shewmr4_2163 2592299 - 2591640 - | intracellular proteinase inhibitor domain-containing protein Shewmr4_2164 2594122 - 2592302 - | AsmA family protein TERM 3153 2593332 - 2593343 + g 70 -2.2 -5.00895 | AACTTGCTGATGTGC GCAG ACAA TTGC TTTTTATCTAATGCG TERM 3154 2593965 - 2593955 - G 73 -3.2 -5.0133 | TACCGTGGGAAAAAA CGTC CAC GACA AGTCATCAGCAATGA Shewmr4_2165 2594659 - 2594165 - | ribonuclease activity regulator protein RraA Shewmr4_2166 2594880 - 2595200 + | hypothetical protein TERM 3155 2595379 - 2595345 - T 100 -11.6 -4.51238 | opp_overlap 2595351 2595354, overlap 2595347 TGGATAAAACACAAA TAGATATAAGGCGC TAACCCT GCGCCTTATATCTG GATGGTAGATTACAT TERM 3156 2595377 - 2595347 - T 100 -14.2 -3.85066 | opp_overlap 2595351 2595354, overlap 2595345 GATAAAACACAAATA GATATAAGGCGC TAACCCT GCGCCTTATATC TGGATGGTAGATTAC TERM 3157 2595351 - 2595373 + T 71 -9.2 -2.92463 | opp_overlap 2595347 2595345, overlap 2595354 AAACACAAATAGATA TAAGGCGC TAACCCT GCGCCTTA TATCTGGATGGTAGA Shewmr4_2167 2597179 - 2595389 - | hypothetical protein TERM 3158 2596206 - 2596218 + g 70 -3.3 -4.77165 | opp_overlap 2596206 AATTTATCAATCAAT TGGCG AAT CGCGA TTTTATTGTCGGCAG TERM 3159 2598026 - 2598013 - g 82 -8.1 -4.58424 | TAGCATCATAGAAAA GCTGC CCGA GCAGC GACAAAATCTCTTAT TERM 3160 2598195 - 2598181 - g 84 -4.2 -5.24799 | opp_overlap 2598181, overlap 2598182 CGATAAAGATAAAAA GTCAGC GTT GCTGAG TCATTTGATCCAAGA Shewmr4_2168 2597492 - 2598955 + | DEAD/DEAH box helicase domain-containing protein TERM 3161 2599281 - 2599294 + G 85 -3.7 -5.5112 | CCGATGCACCGCACT CGGCG ACCG CGCAG TTTTTTATTAATACG Shewmr4_2169 2599001 - 2599501 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 3162 2599677 - 2599648 - T 89 -7.1 -5.03994 | opp_overlap 2599648 GCCTAGAGAGAAAAA GGAGCACTCAACC CAAT GGTTAGTTGCTCC TTTTTGTTCATTAAC TERM 3163 2599648 - 2599677 + T 90 -7.1 -5.1963 | opp_overlap 2599648 GCCTAGAGAGAAAAA GGAGCACTCAACC CAAT GGTTAGTTGCTCC TTTTTGTTCATTAAC Shewmr4_2170 2600204 - 2599746 - | hypothetical protein TERM 3164 2600227 - 2600213 - R 100 -8.5 -5.36441 | TCTTCATATAAAAAA CCCGC TTAGT GCGGG CCATTTTACACCAAT Shewmr4_2171 2601244 - 2600243 - | putative transglycosylase TERM 3165 2601042 - 2601052 + g 86 -6.8 -5.03747 | overlap 2601050 2601051 TGGCTTGGCGCTGCG GCCA CAT TGGC TTTTTTAAAGCGTTT Shewmr4_2172 2601547 - 2601269 - | hypothetical protein TERM 3166 2602004 - 2601968 - g 70 -8 -3.70902 | gap 2 CTTGCCATAGTGAAA GCGG-GCAAACAGA-GCG TTA CGCCCCCGCCTGCGCCGC GTCAAACTAAGGTTT Shewmr4_2173 2601671 - 2602336 + | septum site-determining protein MinC Shewmr4_2174 2602364 - 2603173 + | septum site-determining protein MinD Shewmr4_2175 2603176 - 2603433 + | cell division topological specificity factor MinE TERM 3167 2603435 - 2603483 + T 70 -3.9 -4.89393 | gap 2, overlap 2603445 TGCCTGACAGATAAG TCG-AGC-GTTGGCGTCATCCTC ATCAC GGGGATGACGCTTTCTGCTGTGA TTTTTCTAGCATTTG TERM 3168 2603445 - 2603471 + T 100 -14.5 -4.04752 | overlap 2603435 ATAAGTCGAGCGTTG GCGTCATCCTC ATCAC GGGGATGACGC TTTCTGCTGTGATTT Shewmr4_2176 2604776 - 2603622 - | ribonuclease D TERM 3169 2604794 - 2604779 - R 100 -11.8 -5.35224 | opp_overlap 2604779 TCCATAAAAACAAAA GCCGGC TGAT GCCGGC TTCAATCTTACGCGC TERM 3170 2604779 - 2604794 + r 86 -11.8 -3.1855 | opp_overlap 2604779 TCCATAAAAACAAAA GCCGGC TGAT GCCGGC TTCAATCTTACGCGC Shewmr4_2177 2606475 - 2604802 - | long-chain-fatty-acid--CoA ligase TERM 3171 2605447 - 2605458 + g 72 -3.6 -4.83169 | GATGCTCTGCCATTT GTCG GCTA CGGC TTTTTGTACCGCCAT Shewmr4_2178 2607541 - 2606675 - | alpha/beta hydrolase fold Shewmr4_2179 2608375 - 2607563 - | hypothetical protein Shewmr4_2180 2609214 - 2608507 - | hypothetical protein Shewmr4_2181 2609515 - 2609207 - | hypothetical protein TERM 3172 2609593 - 2609619 + r 70 -9.5 -2.88054 | opp_overlap 2609590 2609593, overlap 2609592 CTAACTAAGAATTGA TGTCTGCATCG AGAAC CCATGCAGACA CTTTAGATTCTAACG TERM 3173 2609619 - 2609593 - R 74 -10.2 -2.68886 | opp_overlap 2609593 2609592, overlap 2609590 CTAACTAAGAATTGA TGTCTGCATCGA GAA CCCATGCAGACA CTTTAGATTCTAACG Shewmr4_2182 2610368 - 2609658 - | peptidase M22, glycoprotease TERM 3174 2610691 - 2610710 + H 79 -10.8 -2.93853 | overlap 2610687 TTTACTCTCTCCCAC TTACGCGA AGCT TCGCGTAA TGCTTTGCACTCTGT Shewmr4_2183 2610741 - 2611739 + | delta-aminolevulinic acid dehydratase TERM 3175 2611804 - 2611776 - T 86 -11.8 -3.05723 | opp_overlap 2611781, overlap 2611781 CAGCCAAACAATAAC GAAAACGCCACC CTATC GGTGGCGTTTTT ATCCGTCAATTTACC TERM 3176 2611781 - 2611799 + T 100 -11.7 -4.88067 | opp_overlap 2611776 2611781 AAACAATAACGAAAA CGCCACC CTATC GGTGGCG TTTTTATCCGTCAAT TERM 3177 2611799 - 2611781 - T 100 -11.7 -4.63179 | opp_overlap 2611781, overlap 2611776 AAACAATAACGAAAA CGCCACC CTATC GGTGGCG TTTTTATCCGTCAAT Shewmr4_2184 2612737 - 2611832 - | bifunctional methionine sulfoxide reductase B/A protein TERM 3178 2611970 - 2611959 - G 70 -2.2 -4.91109 | overlap 2611968 TCCGCAGGATAAAAA GACT CAAA AGCC ACCACTTGGGTGACG TERM 3179 2611984 - 2611968 - G 71 -5.8 -4.37991 | overlap 2611959 TAAAAAGACTCAAAA GCCACC ACTTG GGTGAC GATCGGCGCATCAAA TERM 3180 2613461 - 2613448 - g 74 -4.5 -4.77036 | GCCTACTATGAAAAA GCCAA TGCG CTGGC CTCTGAACTGTTAGA Shewmr4_2185 2613115 - 2613954 + | 2OG-Fe(II) oxygenase TERM 3181 2614020 - 2614007 - f 83 -9.5 -4.01419 | opp_overlap 2614007 GATTAAGCAATTAAA GCGCC TTCG GGCGC TTTTTTTATGACATT TERM 3182 2614007 - 2614020 + F 100 -9.5 -5.63504 | opp_overlap 2614007 GATTAAGCAATTAAA GCGCC TTCG GGCGC TTTTTTTATGACATT rbgA 2614091 - 2615032 + | ribosomal biogenesis GTPase TERM 3183 2615191 - 2615215 + T 100 -8.5 -4.93877 | overlap 2615192 TCAGTTTGACGTATC AGCCAGCGC CATCTCA GCGCTGGCA TTTTATTTGCTCCCA TERM 3184 2615192 - 2615214 + T 91 -12 -3.55603 | overlap 2615191 CAGTTTGACGTATCA GCCAGCGC CATCTCA GCGCTGGC ATTTTATTTGCTCCC Shewmr4_2187 2615786 - 2615346 - | hypothetical protein Shewmr4_2188 2616585 - 2616019 - | hypothetical protein Shewmr4_2189 2617755 - 2617240 - | protein tyrosine phosphatase Shewmr4_2190 2618798 - 2617776 - | hypothetical protein Shewmr4_2191 2619809 - 2618901 - | DNA ligase Shewmr4_2192 2620063 - 2620434 + | diacylglycerol kinase TERM 3185 2620567 - 2620542 - T 100 -8.3 -5.61596 | opp_overlap 2620542 ATTTCGATAAAAAAA CGCCTTTGAGA TCTC TCCTAAAGGCG TTTTTCTACTGTAGA TERM 3186 2620542 - 2620567 + T 100 -8.3 -4.95155 | opp_overlap 2620542 ATTTCGATAAAAAAA CGCCTTTGAGA TCTC TCCTAAAGGCG TTTTTCTACTGTAGA Shewmr4_2193 2621443 - 2620583 - | LysR family transcriptional regulator TERM 3187 2621205 - 2621253 + g 77 -13.2 -2.52676 | gap 1, opp_overlap 2621202, overlap 2621204 CTGAGGGAGACATCC TGCTTGGCGCGCTCCCAAGCGGT TAAT ACCGCTTCGGCATGC-CCAAGCA TACGTTCGCCCGCTG Shewmr4_2194 2621552 - 2622004 + | hypothetical protein TERM 3188 2622958 - 2622944 - g 80 -3.4 -5.22794 | ATAAGGATGAAAAAA GCAGCG AGT CACAGC AAGCTCAAGCAACAA Shewmr4_2195 2622025 - 2623035 + | alpha-L-glutamate ligase TERM 3189 2623071 - 2623096 + F 100 -14.1 -5.02074 | CGCTAACATCGTATC TGCGGCTCAGT CTCC ACTGAGTCGCA TTTTTTGGGCCCTAG Shewmr4_2196 2623288 - 2624211 + | hypothetical protein TERM 3190 2624248 - 2624233 - T 100 -10.4 -5.39755 | opp_overlap 2624233 GATAAGCATAAAAAA GGACGC CTTG GCGTCC TTTTTACATTTGTCA TERM 3191 2624233 - 2624248 + T 100 -10.4 -4.84529 | opp_overlap 2624233 GATAAGCATAAAAAA GGACGC CTTG GCGTCC TTTTTACATTTGTCA Shewmr4_2197 2625892 - 2624267 - | peptidase M28 TERM 3192 2624516 - 2624493 - G 70 -4.5 -4.63048 | CTCATAAATAACAAA CCTGGCACA CCTTGC TGGGCCAAG GCAAAGTGATCCGAT TERM 3193 2626659 - 2626678 + G 70 -9.2 -3.53279 | overlap 2626657 GCCGGCATGTTGGCT CAGGCGCC CGAG GGCACCTG TCTTATCTTTGTCGA Shewmr4_2198 2626053 - 2627078 + | diguanylate cyclase TERM 3194 2627088 - 2627114 + T 100 -16.7 -3.93583 | opp_overlap 2627088 2627091, overlap 2627091 AACTAATCCAAGCAA CAAGGCAGAGC CATCA GCTCTGCCTTG TTTATCAGTCGATTG TERM 3195 2627114 - 2627088 - T 100 -17.4 -3.41636 | opp_overlap 2627088 2627091, overlap 2627091 AACTAATCCAAGCAA CAAGGCAGAGCC ATC AGCTCTGCCTTG TTTATCAGTCGATTG TERM 3196 2627111 - 2627091 - T 100 -13.3 -3.83675 | opp_overlap 2627088 2627091, overlap 2627088 TAATCCAAGCAACAA GGCAGAGCC ATC AGCTCTGCC TTGTTTATCAGTCGA TERM 3197 2627091 - 2627111 + T 100 -12.6 -4.09117 | opp_overlap 2627091 2627088, overlap 2627088 TAATCCAAGCAACAA GGCAGAGC CATCA GCTCTGCC TTGTTTATCAGTCGA Shewmr4_2199 2627891 - 2627202 - | sortase family protein TERM 3198 2627864 - 2627899 + g 77 -12 -3.03441 | CCCCTATTTGTATCT GTTGAGTCATGCGCAT ACTC ATGGACATGACTCAAC TATTCAGCGCTAATG Shewmr4_2200 2630174 - 2627895 - | vault protein inter-alpha-trypsin subunit TERM 3199 2629287 - 2629310 + g 74 -4.4 -4.75372 | opp_overlap 2629290, overlap 2629290 GGGCACGCGATTAGC CAAGGCCGCC GTCA GTTGGCCCTG TTTTTCATCAATCGT Shewmr4_2201 2631014 - 2630220 - | OmpA/MotB domain-containing protein TERM 3200 2630618 - 2630634 + g 79 -8.7 -4.27316 | overlap 2630610 GTTGTTGCTCGGCGA GCAGCTC ATC GAGTTGC TTTTGGGTTGAGGCG TERM 3201 2630896 - 2630925 + g 77 -8.7 -4.07568 | gap 1, opp_overlap 2630894 TCTTGCTCAAGCATC TCAGTCTGTGGCTC TGA GAGC-ACAGGTTGA TTTTGCAAGGAAACC Shewmr4_2202 2631260 - 2631952 + | two component transcriptional regulator TERM 3202 2632741 - 2632725 - g 74 -10.1 -3.52849 | opp_overlap 2632725, overlap 2632723 CAACGACAGCAAATA CCGCGAT GTG ACCGCGG TTGTCGGCACCTCAG TERM 3203 2633135 - 2633158 + G 85 -12.4 -3.78329 | opp_overlap 2633134 2633132 2633131 CAGACAATAAAGCAG TGGTGCTGGC GGCC GCCAGCCCCA TTTGGATTGATAACA TERM 3204 2633242 - 2633204 - g 74 -7.5 -4.15044 | opp_overlap 2633186, overlap 2633207 TGGTGGCCGAAGAAA CCA-CCCACGGTATTCGCA CCC TGCGTA-ACCGTGCGCTGG AAAAACTGTTTAACG Shewmr4_2203 2631985 - 2634144 + | periplasmic sensor signal transduction histidine kinase TERM 3205 2634533 - 2634549 + G 71 -5 -4.46576 | TATCCCTCAGGTGCA GCGGCG ATTAG CGCGGC TTTGTTATCGTTTTT TERM 3206 2634962 - 2634975 + G 76 -8.1 -4.20367 | opp_overlap 2634949 AAGCACTGGCCGCAG CTGCG TGAA CGCAG TTATTTATTGGGGCA Shewmr4_2204 2634269 - 2635468 + | cystathionine beta-lyase TERM 3207 2635520 - 2635495 - T 71 -6.8 -4.20148 | opp_overlap 2635495 2635496, overlap 2635496 ATTATGTGAAAACAA CGAAGGCGGG AGCTTA CTCGCCTTCA TTTTGCCAAGCCTTC TERM 3208 2635495 - 2635520 + T 71 -6.8 -4.08692 | opp_overlap 2635495 2635496, overlap 2635496 ATTATGTGAAAACAA CGAAGGCGGG AGCTTA CTCGCCTTCA TTTTGCCAAGCCTTC TERM 3209 2635496 - 2635519 + T 76 -10.3 -3.04894 | opp_overlap 2635496 2635495, overlap 2635495 TTATGTGAAAACAAC GAAGGCGGG AGCTTA CTCGCCTTC ATTTTGCCAAGCCTT Shewmr4_2205 2636096 - 2635581 - | CreA family protein Shewmr4_2206 2637560 - 2636106 - | putative chaperone TERM 3210 2637356 - 2637366 + g 70 -8.2 -3.66018 | opp_overlap 2637340, overlap 2637355 GGGCGCGGCTCAATT GCGC GGC GCGC TTCTTGGCATAATCC TERM 3211 2638261 - 2638233 - g 79 -7.5 -4.54681 | ATCAACGAAAAACAA TTAAGCGAGTTCC ACA GTAACTGGCTTAA AAAACATTTTCGCGA Shewmr4_2207 2637885 - 2640047 + | polyphosphate kinase TERM 3212 2640054 - 2640039 - f 82 -10.4 -3.65313 | opp_overlap 2640039 GAATTACAGGCCAAA GCCAGC TAAC GCTGGC TTTATCATCGTCTCG TERM 3213 2640039 - 2640054 + F 89 -10.4 -4.00782 | opp_overlap 2640039 GAATTACAGGCCAAA GCCAGC TAAC GCTGGC TTTATCATCGTCTCG Shewmr4_2208 2640090 - 2641646 + | Ppx/GppA phosphatase Shewmr4_2209 2642595 - 2641726 - | Ion transport protein TERM 3214 2642515 - 2642498 - G 73 -6.3 -4.44284 | gap 1, overlap 2642500 2642501 AAGCCAATATCAAAA TAGCGCCC TGC GGGCG-TA TCAGTGCCAAAAATA TERM 3215 2642513 - 2642501 - G 70 -10.5 -2.88389 | overlap 2642500 2642498 CCAATATCAAAATAG CGCCC TGC GGGCG TATCAGTGCCAAAAA Shewmr4_2210 2642753 - 2643268 + | hypothetical protein TERM 3216 2643271 - 2643291 + F 81 -11.1 -3.36785 | overlap 2643258 GATTTGGCCCTAAGC GCTAAGCGC TAA GCGCTAAGC TTGATTAGCCTATGC TERM 3217 2643314 - 2643331 + F 100 -8.4 -5.4659 | opp_overlap 2643314 GCCTATGCGACTCAA CGCCCA GTCAAA TGGGCG TTTTTATTTGTATTC Shewmr4_2211 2643366 - 2643980 + | hypothetical protein Shewmr4_2212 2644209 - 2644469 + | hypothetical protein Shewmr4_2213 2644666 - 2645022 + | hypothetical protein TERM 3218 2645117 - 2645087 - T 100 -12.7 -3.69092 | opp_overlap 2645096 AATAGTAAGCGCAAA GAGAGTGACCAAC GGCTA GTTGTTCACTCTC AAAATATGATAATTC Shewmr4_2214 2646048 - 2645143 - | peptidase M23B TERM 3219 2645419 - 2645401 - G 73 -5.2 -4.63218 | overlap 2645403 2645405 GCCGCCCGAATAAAA CATATCGG GAA CCGACAGG CTGATCACGCCATCG TERM 3220 2646099 - 2646075 - R 100 -15.9 -3.96216 | opp_overlap 2646078, overlap 2646078 TCCTTATTCAAACAA TAACGCCCTAA AGA TTAGGGCGTTA TAAAAAATCGACTGG TERM 3221 2646078 - 2646096 + r 100 -13.2 -3.30124 | opp_overlap 2646075 2646078 TTATTCAAACAATAA CGCCCTAA AGA TTAGGGCG TTATAAAAAATCGAC TERM 3222 2646096 - 2646078 - R 100 -13.2 -4.10744 | opp_overlap 2646078, overlap 2646075 TTATTCAAACAATAA CGCCCTAA AGA TTAGGGCG TTATAAAAAATCGAC Shewmr4_2215 2646991 - 2646116 - | hypothetical protein Shewmr4_2216 2647574 - 2648575 + | cytochrome-c peroxidase TERM 3223 2648652 - 2648619 - T 79 -8.1 -4.36914 | opp_overlap 2648621 2648625, overlap 2648625 CGCTTTCGCACAAAA GTTAAAGGCCGAGGA TTAA TCCTCGGCCTTTGTG TTTAATGCTTGATGC TERM 3224 2648621 - 2648650 + T 100 -17.3 -3.51124 | opp_overlap 2648619 2648625, overlap 2648625 CTTTCGCACAAAAGT TAAAGGCCGAGGA TTAA TCCTCGGCCTTTG TGTTTAATGCTTGAT TERM 3225 2648646 - 2648625 - T 100 -15.9 -3.96705 | opp_overlap 2648625 2648621, overlap 2648619 CGCACAAAAGTTAAA GGCCGAGGA TTAA TCCTCGGCC TTTGTGTTTAATGCT TERM 3226 2648625 - 2648646 + T 100 -15.9 -4.37506 | opp_overlap 2648619 2648625, overlap 2648621 CGCACAAAAGTTAAA GGCCGAGGA TTAA TCCTCGGCC TTTGTGTTTAATGCT Shewmr4_2217 2649742 - 2648714 - | nucleoid-associated protein NdpA Shewmr4_2218 2649820 - 2650038 + | hypothetical protein TERM 3227 2650158 - 2650122 - g 78 -3.7 -5.08824 | overlap 2650127 GGTCGAGCGAAAAAA GCAAATGAGCCGCGA TCGCGTG TCACGACTCATCAAC TGGGGACATTGGTTC TERM 3228 2650153 - 2650127 - g 76 -6.6 -4.43669 | overlap 2650122 AGCGAAAAAAGCAAA TGAGCCGCGA TCGCGTG TCACGACTCA TCAACTGGGGACATT Shewmr4_2219 2650105 - 2651895 + | sulfatase TERM 3229 2652008 - 2651968 - T 100 -13.5 -3.47349 | opp_overlap 2651978, overlap 2651978 GCGTTAAAGCGAGAA TAAACAAAAAGCCCCACCT TAA ACGTGGGGCTTTTTATTTG GCGAACAACTCACTT TERM 3230 2651998 - 2651978 - T 100 -11.1 -5.50774 | opp_overlap 2651978, overlap 2651968 GAGAATAAACAAAAA GCCCCACCT TAA ACGTGGGGC TTTTTATTTGGCGAA TERM 3231 2651978 - 2651998 + T 100 -11.1 -5.27335 | opp_overlap 2651978 2651968 GAGAATAAACAAAAA GCCCCACCT TAA ACGTGGGGC TTTTTATTTGGCGAA Shewmr4_2220 2653135 - 2652023 - | NADH:flavin oxidoreductase/NADH oxidase TERM 3232 2652871 - 2652882 + g 70 -4.4 -4.72272 | CGCCAGAATCTTTAA TTGC CGTG GCAA TTTTTGCTAAGCCCG TERM 3233 2653494 - 2653480 - g 70 -2.8 -4.82667 | overlap 2653481 CGATTACAGCAAAAA CTCATC CAA GATGAT GCCCATATTGGCGAA Shewmr4_2221 2653237 - 2654103 + | LysR family transcriptional regulator Shewmr4_2222 2654286 - 2655224 + | diguanylate cyclase Shewmr4_2223 2656092 - 2655427 - | transcriptional regulator NarL Shewmr4_2224 2657854 - 2656085 - | nitrate/nitrite sensor protein NarX TERM 3234 2659473 - 2659451 - g 95 -12 -4.41494 | CAGGCCCAAGTAAAA GCAGCAACAG ATA CTGCTGCCGC ATTAGGGTTTATCTC Shewmr4_2225 2658257 - 2659675 + | nitrite transporter TERM 3235 2659686 - 2659737 + F 100 -22.8 -3.10894 | opp_overlap 2659702, overlap 2659702 TTTAGTGATTTGATT GTTGTATGAATAAAAACGGTTTGC CTAG GCAAACCGTTTTTATTCATACGAG TTAAATGATGATGCT TERM 3236 2659702 - 2659721 + F 100 -12.2 -5.1356 | opp_overlap 2659702, overlap 2659686 TTGTATGAATAAAAA CGGTTTGC CTAG GCAAACCG TTTTTATTCATACGA TERM 3237 2659721 - 2659702 - f 100 -12.2 -5.1356 | opp_overlap 2659686 2659702 TTGTATGAATAAAAA CGGTTTGC CTAG GCAAACCG TTTTTATTCATACGA TERM 3238 2661902 - 2661914 + G 70 -3.3 -4.85599 | ACCTCCACGTCATAT GAACG GCA CGTCC TTTTTCTACAATCAC Shewmr4_2226 2660082 - 2663846 + | respiratory nitrate reductase alpha subunit apoprotein Shewmr4_2227 2663849 - 2665387 + | respiratory nitrate reductase beta subunit Shewmr4_2228 2665393 - 2666103 + | respiratory nitrate reductase chaperone NarJ Shewmr4_2229 2666106 - 2666789 + | respiratory nitrate reductase gamma subunit TERM 3239 2666825 - 2666805 - f 100 -12.6 -4.56978 | opp_overlap 2666805 GTTCTAAATAATAAA GCCACCTG TTTTG CAGGTGGC TTTGATACGACATTC TERM 3240 2666805 - 2666825 + F 100 -13.3 -3.737 | opp_overlap 2666805 GTTCTAAATAATAAA GCCACCTGT TTT GCAGGTGGC TTTGATACGACATTC Shewmr4_2230 2666953 - 2667312 + | hypothetical protein Shewmr4_2231 2668535 - 2667600 - | hypothetical protein TERM 3241 2668597 - 2668569 - H 73 -9.9 -2.93929 | opp_overlap 2668573 2668577, overlap 2668568 2668573 CAAACCACATCAAAG TAAATCTATTTCT AGC AGAAATAAATTTA GATATTAAATTATCA TERM 3242 2669066 - 2669080 + H 78 -7.2 -4.43477 | opp_overlap 2669065 2669079, overlap 2669072 TCTTGAATCAACACC GATTTC CTA GAAATC TTTTAGTTAGATAAA Shewmr4_2232 2669115 - 2669333 + | transposase IS3/IS911 family protein Shewmr4_2234 2671137 - 2670121 - | fimbrial protein Shewmr4_2235 2673693 - 2671234 - | fimbrial biogenesis outer membrane usher protein TERM 3243 2673479 - 2673465 - G 74 -7.2 -4.21439 | TAACCTCAAGAGAAA CCTTTT TTA AAAAGG AACCATTAACGAATA Shewmr4_2236 2674397 - 2673696 - | pili assembly chaperone TERM 3244 2674455 - 2674420 - R 86 -9.8 -4.03413 | opp_overlap 2674420, overlap 2674423 AGCCCTCCATATAAA GAGGCACGTGTATAAA TACT CTCATACACGTGCACC ATTTCATTGTTACAT TERM 3245 2674452 - 2674423 - R 89 -12.3 -2.76418 | opp_overlap 2674420, overlap 2674420 CCTCCATATAAAGAG GCACGTGTATAAA TACT CTCATACACGTGC ACCATTTCATTGTTA Shewmr4_2237 2675013 - 2674465 - | fimbrial protein TERM 3246 2675063 - 2675037 - H 76 -6.8 -4.55295 | overlap 2675061 CTTTTTATAAATAAA TAATTAATTAGC CAC ACCAATTAATTA CGTTGATATAAACGC TERM 3247 2675225 - 2675200 - H 100 -11.9 -5.31456 | opp_overlap 2675200 TTAATGTATAAAAAA GGCCGCCTA ACTTTATA TAGGCGGCC TTTAGCTAGTAACAC TERM 3248 2675200 - 2675225 + H 93 -11.9 -3.68351 | opp_overlap 2675200 TTAATGTATAAAAAA GGCCGCCTA ACTTTATA TAGGCGGCC TTTAGCTAGTAACAC Shewmr4_2238 2676245 - 2677228 + | fimbrial protein Shewmr4_2240 2678296 - 2679498 + | IS4 family transposase Shewmr4_2241 2680718 - 2679723 - | fimbrial protein Shewmr4_2242 2680892 - 2681614 + | diguanylate phosphodiesterase TERM 3249 2681617 - 2681654 + F 77 -3.5 -5.11836 | gap 1, opp_overlap 2681621 2681624, overlap 2681612 2681618 2681621 TTTTGATGATTAAAT AGAAGATTGAATCATGAG GTG CTCAGGATTC-ATCTGCA TTTTATTTTCGCTAT TERM 3250 2681650 - 2681621 - f 70 -7.3 -3.87323 | gap 1, opp_overlap 2681618 2681617 2681612 2681621, overlap 2681624 GATGATTAAATAGAA GATTGAATCATGAG GTG CTCAGGATTC-ATC TGCATTTTATTTTCG TERM 3251 2681648 - 2681624 - f 71 -10.1 -2.70128 | opp_overlap 2681621 2681618 2681617 2681612, overlap 2681621 GATTAAATAGAAGAT TGAATCATGAG GTG CTCAGGATTCA TCTGCATTTTATTTT TERM 3252 2681859 - 2681819 - f 100 -12.1 -4.86001 | opp_overlap 2681822 2681825 2681826, overlap 2681826 ATCATCGTATAAAAA CATTAAAGCCTCACAGTAA AAG TTACTATGAGGCCTTTATA TTGATTGACTTCGGG TERM 3253 2681822 - 2681857 + F 76 -10 -3.27109 | gap 1, opp_overlap 2681819 2681826, overlap 2681825 2681826 ATCGTATAAAAACAT TAAA-GCCTCACAGTAA AAG TTACTATGAGGCCTTTA TATTGATTGACTTCG TERM 3254 2681825 - 2681853 + F 86 -8.9 -4.2772 | opp_overlap 2681819 2681826, overlap 2681822 2681826 GTATAAAAACATTAA AGCCTCACAGTAA AAG TTACTATGAGGCC TTTATATTGATTGAC TERM 3255 2681852 - 2681826 - f 100 -14.6 -4.16158 | opp_overlap 2681826 2681825 2681822, overlap 2681819 TATAAAAACATTAAA GCCTCACAGTAA AAG TTACTATGAGGC CTTTATATTGATTGA TERM 3256 2681826 - 2681852 + F 93 -12.4 -3.15909 | opp_overlap 2681819 2681826, overlap 2681825 2681822 TATAAAAACATTAAA GCCTCACAGTAA AAG TTACTATGAGGC CTTTATATTGATTGA TERM 3257 2682843 - 2682857 + G 74 -4.3 -4.78077 | CGAACCATGAGTTCA CAGAT CAGCT ATCTG TTTATTTTAATTACC Shewmr4_2243 2682324 - 2684504 + | diguanylate cyclase Shewmr4_2244 2685967 - 2684501 - | hypothetical protein TERM 3258 2685036 - 2685019 - G 83 -12.7 -3.53012 | CGGCGGCGCTCGAAA CCGTCGC ATCA GCGACGG ATTGAAAAGTGAGTA Shewmr4_2245 2686132 - 2686668 + | hypothetical protein TERM 3259 2686789 - 2686817 + T 75 -10.4 -2.79823 | opp_overlap 2686795, overlap 2686795 TAAGCATTCGCACAT AAAAAAGCACCC AACCA GGGTGCTTTTTC GTTAATTTTCAGACG TERM 3260 2686795 - 2686811 + T 100 -9.4 -4.97312 | opp_overlap 2686795, overlap 2686789 TTCGCACATAAAAAA GCACCC AACCA GGGTGC TTTTTCGTTAATTTT TERM 3261 2686811 - 2686795 - T 100 -9.4 -5.36441 | opp_overlap 2686789 2686795 TTCGCACATAAAAAA GCACCC AACCA GGGTGC TTTTTCGTTAATTTT nadE 2687737 - 2686847 - | NAD synthetase TERM 3262 2687131 - 2687112 - G 76 -7 -4.44046 | TTGAGGCCAAATAAA GGCGCCAG ATCG CAGGCACC ATCGCCCCATTTAGT TERM 3263 2687401 - 2687419 + g 74 -4.5 -4.82855 | overlap 2687397 2687403 TAAATTGGCAAGCTT GCTGAGC TTCGT GCTCATC TTTTTGAATTTGATA TERM 3264 2687611 - 2687600 - G 74 -7.2 -4.23213 | TTTAGATTTAATAAA CGCC ACAC GGCG CTGCACTTCGAACTC TERM 3265 2687868 - 2687829 - R 100 -17.4 -4.57073 | opp_overlap 2687832 2687835, overlap 2687832 CATCTCTCTCAAAAA CAATAAGGGCAATAACGG TTTG CCGCTATTGCCCTTATTT ACTTAAACCTATTCA TERM 3266 2687832 - 2687865 + r 100 -16.9 -3.91352 | opp_overlap 2687832 2687829, overlap 2687835 CTCTCTCAAAAACAA TAAGGGCAATAACGG TTTG CCGCTATTGCCCTTA TTTACTTAAACCTAT TERM 3267 2687865 - 2687832 - R 100 -19.1 -4.40561 | opp_overlap 2687832 2687835, overlap 2687829 CTCTCTCAAAAACAA TAAGGGCAATAACGG TTTG CCGCTATTGCCCTTA TTTACTTAAACCTAT TERM 3268 2687835 - 2687862 + r 100 -14.2 -4.0825 | opp_overlap 2687832 2687829, overlap 2687832 TCTCAAAAACAATAA GGGCAATAACGG TTTG CCGCTATTGCCC TTATTTACTTAAACC Shewmr4_2247 2689191 - 2687887 - | inosine-guanosine kinase Shewmr4_2248 2690428 - 2689382 - | ferrochelatase TERM 3269 2690255 - 2690239 - G 77 -8.7 -4.08216 | TTATCCCCTGCAAAA TCGGCTG CCA CAGCCAA GGGGACAAATCGACG TERM 3270 2690463 - 2690448 - R 100 -10.4 -5.7946 | opp_overlap 2690448 TCGCCAATAAAAAAA GCCTGC AATA GCAGGC TTTTTCCTAATATGA TERM 3271 2690448 - 2690463 + r 100 -10.4 -4.79223 | opp_overlap 2690448 TCGCCAATAAAAAAA GCCTGC AATA GCAGGC TTTTTCCTAATATGA Shewmr4_2249 2691152 - 2690508 - | adenylate kinase Shewmr4_2250 2692157 - 2691294 - | thioredoxin domain-containing protein TERM 3272 2692272 - 2692231 - R 72 -7.4 -4.07568 | gap 2, opp_overlap 2692232 2692233 2692235 2692236, overlap 2692236 TCGCGCTGCCTAAAA CGGAATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAAT--G TCTTACTTCAGGTTC TERM 3273 2692232 - 2692274 + r 89 -12.1 -3.37612 | gap 1, opp_overlap 2692231 2692236, overlap 2692233 2692235 2692236 CGCGCTGCCTAAAAC GG-AATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAATGTC TTACTTCAGGTTCGC TERM 3274 2692233 - 2692272 + r 100 -13.6 -3.25539 | opp_overlap 2692231 2692236, overlap 2692232 2692235 2692236 GCGCTGCCTAAAACG GAATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAATG TCTTACTTCAGGTTC TERM 3275 2692235 - 2692270 + r 100 -16.2 -3.18634 | opp_overlap 2692231 2692236, overlap 2692233 2692232 2692236 GCTGCCTAAAACGGA ATCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGAA TGTCTTACTTCAGGT TERM 3276 2692269 - 2692236 - R 100 -19.7 -3.36823 | opp_overlap 2692235 2692233 2692232 2692236, overlap 2692231 CTGCCTAAAACGGAA TCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGA ATGTCTTACTTCAGG TERM 3277 2692236 - 2692269 + r 100 -19.7 -2.50699 | opp_overlap 2692236 2692231, overlap 2692235 2692233 2692232 CTGCCTAAAACGGAA TCGGGGCACTTGTGT CTCG ACTCAAGTGCCCCGA ATGTCTTACTTCAGG Shewmr4_2251 2694188 - 2692275 - | heat shock protein 90 TERM 3278 2693488 - 2693512 + g 73 -2.7 -5.04385 | overlap 2693490 GCCTTGTTCATGACC TTCCAGTAACC TTC GGTAGCGGGGA TTTTTTCACCGTCTG TERM 3279 2693843 - 2693865 + g 86 -8.4 -4.59853 | opp_overlap 2693836 CGATCAACTGCGAAT CCTTTGAGGC CTC GCCTGAGAGG TTTTTGAAGAATTCA TERM 3280 2694455 - 2694433 - R 100 -10.5 -5.54907 | opp_overlap 2694433 GCCATAAAATAAAAA CCCGCGAGC ACAGG GCTGGCGGG TTTACTCTTTAGGCC TERM 3281 2694433 - 2694455 + r 89 -10.5 -4.00532 | opp_overlap 2694433 GCCATAAAATAAAAA CCCGCGAGC ACAGG GCTGGCGGG TTTACTCTTTAGGCC Shewmr4_2252 2695078 - 2694479 - | DNA replication and repair protein RecR Shewmr4_2253 2695426 - 2695091 - | hypothetical protein Shewmr4_2254 2698806 - 2695591 - | DNA polymerase III, subunits gamma and tau TERM 3282 2698862 - 2698849 - R 81 -5.2 -5.24129 | opp_overlap 2698854 TGTTGGTACAAAAAA GGGG ATCGCG CCCC GAGATAGTTGCAAGA Shewmr4_2255 2699487 - 2698936 - | adenine phosphoribosyltransferase TERM 3283 2699560 - 2699540 - R 100 -11.2 -5.26119 | opp_overlap 2699538 GCGGTAAAAACAAAA CGTCCACA GCGAG TGTGGACG AGCTTTAATAATTCG Shewmr4_2256 2700036 - 2699668 - | hypothetical protein TERM 3284 2699817 - 2699833 + g 77 -11.5 -3.42069 | overlap 2699816 CTCGGCGTTTAAGGC CGGGGCG CAT CGCCCTG TGTTGTTGCCATTGG TERM 3285 2699944 - 2699924 - G 85 -3.9 -5.45802 | overlap 2699941 CGGGCAAAACAAAAA GCCGCCAAT AGA ATAAACGGC ACAGTCGGTAGTAGA TERM 3286 2700103 - 2700087 - R 100 -12.3 -5.27023 | ACCTGAAAAACAAAA GCCACTC TAA GAGTGGC CAGTAGTATACTCAA Shewmr4_2257 2700259 - 2700137 - | hypothetical protein Shewmr4_2258 2701156 - 2700416 - | hypothetical protein TERM 3287 2700660 - 2700644 - G 87 -4.3 -5.51402 | opp_overlap 2700647 ATAGAGGCAAAAAAA CACTGGC TGC GGCAGCG GCGCTGTCGGGCGAT TERM 3288 2700970 - 2700957 - G 78 -3.8 -5.08824 | TGTTGACTGAAAAAA GCCT GCACTA AGGC TTGCCACTGTGCATC Shewmr4_2259 2701995 - 2701156 - | hypothetical protein TERM 3289 2702092 - 2702075 - R 100 -12.7 -4.41616 | ATGCTGCTAAACAAA GGCCAGC TGAG GCTGGCC AAGTGTAGAGCTGAA Shewmr4_2260 2702561 - 2702130 - | hypothetical protein TERM 3290 2703070 - 2703060 - g 74 -8.2 -4.09685 | CTGCATGGCCGAAAA CGCG ATG CGCG CGATTGAGCTTGGCT Shewmr4_2261 2702821 - 2703768 + | dihydrouridine synthase, DuS TERM 3291 2703829 - 2703803 - f 79 -3 -5.27923 | TAATCCCATAAAAAA GTGGTGAATT TTTAGGT AAACCACCAC TTAATCCCTATAAAT Shewmr4_2262 2703932 - 2704291 + | TraR/DksA family transcriptional regulator TERM 3292 2704565 - 2704580 + T 86 -10.4 -3.80625 | opp_overlap 2704565, overlap 2704576 2704579 CTATAAGCAAAAAAA CCTCCG CAAG CGGAGG TTTGGGTTATCCAGG TERM 3293 2704580 - 2704565 - T 100 -10.4 -5.68023 | opp_overlap 2704565 2704576 2704579 CTATAAGCAAAAAAA CCTCCG CAAG CGGAGG TTTGGGTTATCCAGG Shewmr4_2263 2707256 - 2704608 - | TonB-dependent receptor TERM 3294 2707665 - 2707640 - R 100 -14.9 -4.19276 | opp_overlap 2707640 2707643, overlap 2707643 ACGAGATATAAATAA TAATGCCACTC AAAA GAGTGGCATTA TTGGATCAAAAATTA TERM 3295 2707640 - 2707665 + r 100 -14.9 -3.06133 | opp_overlap 2707640 2707643, overlap 2707643 ACGAGATATAAATAA TAATGCCACTC AAAA GAGTGGCATTA TTGGATCAAAAATTA TERM 3296 2707662 - 2707643 - R 100 -12.2 -4.19887 | opp_overlap 2707640 2707643, overlap 2707640 AGATATAAATAATAA TGCCACTC AAAA GAGTGGCA TTATTGGATCAAAAA TERM 3297 2707643 - 2707662 + r 93 -12.2 -3.67597 | opp_overlap 2707643 2707640, overlap 2707640 AGATATAAATAATAA TGCCACTC AAAA GAGTGGCA TTATTGGATCAAAAA ushA 2709425 - 2707704 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor Shewmr4_2265 2710455 - 2709790 - | carboxylesterase TERM 3298 2710489 - 2710505 + r 72 -10.1 -2.74792 | overlap 2710488 AATCAAAAGTTATTA TGCTCGC CCT GCGAGCG CTTTACAGATAATCA Shewmr4_2266 2710735 - 2710508 - | hypothetical protein Shewmr4_2267 2711122 - 2713050 + | peptidase M1, membrane alanine aminopeptidase TERM 3299 2713240 - 2713269 + T 100 -12.3 -4.05245 | opp_overlap 2713245, overlap 2713245 AAGTATTAGCGCACA AAAAAGCCCAAAC CTAG GTTTGGGCTTTTG TTTACTTATCTGGTC TERM 3300 2713264 - 2713245 - T 100 -12.2 -5.26316 | opp_overlap 2713245 2713240 TTAGCGCACAAAAAA GCCCAAAC CTAG GTTTGGGC TTTTGTTTACTTATC TERM 3301 2713245 - 2713264 + T 100 -12.2 -5.02357 | opp_overlap 2713245, overlap 2713240 TTAGCGCACAAAAAA GCCCAAAC CTAG GTTTGGGC TTTTGTTTACTTATC Shewmr4_2268 2713827 - 2713339 - | peptidylprolyl isomerase, FKBP-type Shewmr4_2269 2715310 - 2714036 - | lytic murein transglycosylase TERM 3302 2714920 - 2714938 + g 76 -3 -5.08824 | overlap 2714922 2714923 ATTCCTGCGCCAATT TATCGAGC AGC GCGCGGTG TTTTTTCAGTAAACG TERM 3303 2715666 - 2715655 - H 75 -3 -5.1615 | CCAACAGCGAAAAAA TCTT AGCA AAGA ATCCCTTGGACTATC TERM 3304 2715809 - 2715786 - g 79 -8.2 -4.31549 | GAAAACGTAAAAGAA CATCAAACAC TCTG GGGTTTGATG GATGAAACTGGCGAA Shewmr4_2270 2715735 - 2716094 + | hypothetical protein TERM 3305 2716122 - 2716156 + F 95 -13 -2.99179 | opp_overlap 2716126, overlap 2716119 2716124 2716126 AAACAGCATGTTTAA GGCATCAAGGGCTGAG GTA TTTAGCTCTTGATGTC TGCTTTCCCTTGTAT TERM 3306 2716124 - 2716154 + F 86 -12 -3.04183 | opp_overlap 2716126, overlap 2716122 2716119 2716126 ACAGCATGTTTAAGG CATCAAGGGCTGAG GTA TTTAGCTCTTGATG TCTGCTTTCCCTTGT Shewmr4_2271 2716152 - 2716793 + | hypothetical protein Shewmr4_2272 2717840 - 2716896 - | response regulator receiver modulated CheW protein Shewmr4_2273 2718656 - 2718042 - | methyltransferase type 11 Shewmr4_2274 2718753 - 2719304 + | peptidase S16, lon domain-containing protein Shewmr4_2275 2719426 - 2720094 + | ECF subfamily RNA polymerase sigma-24 factor TERM 3307 2720760 - 2720738 - g 74 -7 -4.4009 | CTGTATTTTACAAAA GGGCTCAGTA AAT TATTGAACCC GATTGGAGAACTGAT Shewmr4_2276 2720087 - 2720782 + | anti-ECFsigma factor, ChrR Shewmr4_2277 2721298 - 2721480 + | hypothetical protein TERM 3308 2721624 - 2721674 + F 74 -9.9 -3.15407 | opp_overlap 2721622, overlap 2721622 2721620 TCGATATGACGAACT CGTTTGGTTCAGCCAGTATCT AACTCACAC AGATACATGCTGAGCCAAATG TGTATTCCTAATCTA Shewmr4_2278 2721756 - 2722016 + | hypothetical protein Shewmr4_2279 2722997 - 2722020 - | hypothetical protein Shewmr4_2280 2723253 - 2723660 + | hypothetical protein Shewmr4_2281 2724585 - 2723749 - | alpha/beta hydrolase fold Shewmr4_2282 2725625 - 2724585 - | zinc carboxypeptidase-related protein Shewmr4_2283 2726483 - 2725731 - | ABC transporter TERM 3309 2725860 - 2725883 + g 88 -10.4 -4.19678 | opp_overlap 2725858 2725856 2725860 2725863, overlap 2725863 GCGAAACGCAACATA CAACTGTTTG TTAG CAAGCAGTTG TTTATTCACCTGTAA Shewmr4_2284 2726734 - 2727000 + | integral membrane protein TerC TERM 3310 2727022 - 2727049 + T 100 -13.6 -3.72027 | gap 1, opp_overlap 2727022 2727026, overlap 2727026 GCGCACAGCTAAAAA GAAACCCAAG-CC ATC GGACTTGGGTTTC TTCTTAATGCACCCT TERM 3311 2727049 - 2727022 - T 100 -15 -4.70659 | opp_overlap 2727022 2727026, overlap 2727026 GCGCACAGCTAAAAA GAAACCCAAGCC ATCG GACTTGGGTTTC TTCTTAATGCACCCT TERM 3312 2727045 - 2727026 - T 100 -10 -4.89966 | opp_overlap 2727026 2727022, overlap 2727022 ACAGCTAAAAAGAAA CCCAAGCC ATCG GACTTGGG TTTCTTCTTAATGCA TERM 3313 2727026 - 2727045 + T 87 -8.6 -4.48713 | gap 1, opp_overlap 2727022 2727026, overlap 2727022 ACAGCTAAAAAGAAA CCCAAG-CC ATC GGACTTGGG TTTCTTCTTAATGCA Shewmr4_2285 2728775 - 2727063 - | acyl-CoA synthetase TERM 3314 2728728 - 2728703 - G 83 -12.6 -3.61398 | opp_overlap 2728700 2728697 TGGTTTTTTCAACAA GCTCCGGGGA ATTAGG TCCCCGGAAC TCACTGTATTTAAGT Shewmr4_2286 2729284 - 2728904 - | hypothetical protein Shewmr4_2287 2729586 - 2730047 + | hypothetical protein Shewmr4_2288 2730128 - 2730460 + | hypothetical protein TERM 3315 2730518 - 2730477 - T 75 -8.7 -3.57808 | opp_overlap 2730483, overlap 2730475 CTGAATTTACAAACA GCTTCCTGCGCACACTTAA CCCG TTAAGTGTGCGCATTTTGC TTTTAGGGTTAACGC TERM 3316 2730483 - 2730512 + T 100 -18.1 -4.67641 | opp_overlap 2730477 2730475 TTACAAACAGCTTCC TGCGCACACTTAA CCCG TTAAGTGTGCGCA TTTTGCTTTTAGGGT Shewmr4_2289 2731321 - 2730527 - | hypothetical protein TERM 3317 2731157 - 2731145 - G 76 -4.7 -5.03145 | CAACTTGCCAAAAAA GCCAG ATT CAGGC TCGGAGCCATCACCC Shewmr4_2290 2732396 - 2731482 - | LysR family transcriptional regulator TERM 3318 2733063 - 2733043 - g 71 -6.1 -4.31293 | CTAGAGATCAAGAAA TGGGACTAC TTA GTGATCCCA CGCGGCACCACACAT Shewmr4_2291 2732611 - 2733771 + | homogentisate 1,2-dioxygenase TERM 3319 2733790 - 2733768 - f 82 -8.4 -4.36914 | overlap 2733773 CTCTTGGCTAGAAAA CTAACGCTGC ACC GCAGCATGAG TGAATGGCTTAACTA TERM 3320 2734047 - 2734013 - g 73 -3 -4.95854 | overlap 2734017 2734019 GAAAAAAGCCAAAAA TAAAGACATTTTGT ACTACAA ACAAAATGACATTA ACTTCCTGCTCAATA TERM 3321 2734043 - 2734017 - g 74 -3.8 -4.92828 | overlap 2734013 2734019 AAAGCCAAAAATAAA GACATTTTGT ACTACAA ACAAAATGAC ATTAACTTCCTGCTC Shewmr4_2292 2733885 - 2734925 + | 4-hydroxyphenylpyruvate dioxygenase TERM 3322 2734954 - 2734972 + T 100 -14.6 -5.626 | opp_overlap 2734954 TGTTATAAGAAAAAA CGGTACGC ACT GCGTACCG TTTTTTTATGCCCTA TERM 3323 2734972 - 2734954 - T 100 -14.6 -5.55769 | opp_overlap 2734954 TGTTATAAGAAAAAA CGGTACGC ACT GCGTACCG TTTTTTTATGCCCTA Shewmr4_2293 2736522 - 2735119 - | diguanylate cyclase Shewmr4_2294 2737262 - 2736699 - | hexapaptide repeat-containing transferase TERM 3324 2737531 - 2737545 + H 73 -5.7 -4.42238 | opp_overlap 2737530 TGCTATTTGACACAT TGGCT AACTC AGCCA TTTTCATTACACTAG TERM 3325 2737966 - 2737987 + G 71 -7.3 -4.02334 | gap 1, overlap 2737984 TTTTATTACCGCCAT CGCT-AACCC TAA GGGTTGGGCG TTTATGGTGTCGCTA Shewmr4_2295 2737595 - 2738218 + | lysine exporter protein LysE/YggA Shewmr4_2296 2739596 - 2738331 - | hypothetical protein TERM 3326 2739124 - 2739143 + g 73 -10.7 -3.25823 | opp_overlap 2739122 2739123 AAGCAGGTAAATACG GCGCAGC TTAGCT GCTGCGC TTCCTCTGCCAAAAG Shewmr4_2297 2739706 - 2741445 + | gamma-glutamyltransferase 1 TERM 3327 2741622 - 2741592 - T 100 -13.5 -3.72324 | gap 1, opp_overlap 2741592 CAGCCGCATCAACAA GCCCTGC-TATACA CCAC TGTATACGCAGGGC TTTTTACTCTTTGAG TERM 3328 2741592 - 2741622 + T 100 -13.5 -4.93696 | gap 1, opp_overlap 2741592 CAGCCGCATCAACAA GCCCTGC-TATACA CCAC TGTATACGCAGGGC TTTTTACTCTTTGAG TERM 3329 2742271 - 2742281 + T 71 -6.8 -4.09739 | TTCCAACTGTCATTT TCGG ATG CCGA TTTTAAAGAAGTTAC TERM 3330 2742651 - 2742630 - T 80 -8.7 -3.91798 | gap 1, overlap 2742631 TAACTTCTAATTAAA CGG-CGGCAC GCA GTGCCGTCCA GTGAACGAAGTGAAC TERM 3331 2742649 - 2742631 - T 76 -10.2 -2.94597 | overlap 2742630 AACTTCTAATTAAAC GGCGGCAC GCA GTGCCGTC CAGTGAACGAAGTGA Shewmr4_2298 2743167 - 2742742 - | glutathione-dependent formaldehyde-activating, GFA TERM 3332 2742778 - 2742791 + g 70 -2.4 -5.02074 | opp_overlap 2742775 AGAAAACCAAACCGC TTGC CAACGC GCAA TTTTTTCAGCGGTGG Shewmr4_2299 2744484 - 2743507 - | hypothetical protein TERM 3333 2744334 - 2744316 - G 80 -2.4 -5.49569 | TATCAATAGAAAAAA CTGCTTCA AGT TCAAACAG TAGCGATTCTACCCA TERM 3334 2744815 - 2744786 - R 100 -8.5 -4.98255 | opp_overlap 2744790 TCGTAACCACAAAAA CCAACGCATGGTA AAAA TGCCGCGCGTTGG CTGTCCCTCTTGAAG Shewmr4_2300 2745815 - 2745435 - | hypothetical protein TERM 3335 2745971 - 2745941 - R 72 -9.9 -2.7535 | gap 1, opp_overlap 2745951, overlap 2745951 TTGTTTAATACACCA TCTGGAAAAACGCG CATG CGCGT-TTTCCAAA CCTATTAACTAAAAC TERM 3336 2745962 - 2745951 - R 81 -7.2 -4.60487 | opp_overlap 2745951, overlap 2745941 CACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3337 2745951 - 2745962 + r 73 -7.2 -4.09511 | opp_overlap 2745951 2745941 CACCATCTGGAAAAA CGCG CATG CGCG TTTTCCAAACCTATT TERM 3338 2746292 - 2746304 + r 78 -10.5 -3.39844 | overlap 2746291 CAACTGTTACCGTTG GCGGC ATG GCCGC TCTTTCACATCTGAC TERM 3339 2746607 - 2746573 - R 100 -8.1 -5.37865 | gap 2, opp_overlap 2746577, overlap 2746577 2746597 2746598 TTAACAATTAAAAAA GCAA-TGGCGGTT-ATC TAA GATTAACCGCCATTTAC TTATAAACGTGCGAA TERM 3340 2746577 - 2746602 + r 100 -11.3 -3.99678 | gap 1, opp_overlap 2746577 2746573 2746597 2746598 CAATTAAAAAAGCAA TGGCGGTT-ATC TAA GATTAACCGCCA TTTACTTATAAACGT TERM 3341 2746602 - 2746577 - R 100 -11.3 -3.98857 | gap 1, opp_overlap 2746577, overlap 2746573 2746597 2746598 CAATTAAAAAAGCAA TGGCGGTT-ATC TAA GATTAACCGCCA TTTACTTATAAACGT Shewmr4_2301 2748289 - 2746688 - | hypothetical protein TERM 3342 2747206 - 2747235 + g 79 -7.2 -4.57837 | gap 1, overlap 2747207 ACCCCACTAACTCAT TCATGGCAGCCAC AGTGA GTG-CTGCCGTGG TTTTTGGCCAAGTGT Shewmr4_2302 2748563 - 2750791 + | peptidyl-dipeptidase Dcp TERM 3343 2750828 - 2750846 + T 100 -14.6 -4.64676 | opp_overlap 2750828 CAAAAGAGATAAAAA TGGGGAGC TAA GCTCCCCA TTTTATTGCGCGTAA TERM 3344 2750846 - 2750828 - T 100 -14.6 -5.186 | opp_overlap 2750828 CAAAAGAGATAAAAA TGGGGAGC TAA GCTCCCCA TTTTATTGCGCGTAA Shewmr4_2303 2751387 - 2750890 - | GCN5-related N-acetyltransferase Shewmr4_2304 2751970 - 2751422 - | nitroreductase TERM 3345 2751524 - 2751503 - G 72 -3.7 -4.87665 | gap 1 GCCCACGTATAAAAA GCC-GACGAT TTG ATCCTCTGGC GCTAAGCCTAATGCC TERM 3346 2752068 - 2752051 - R 89 -7 -5.30686 | AAGAGGTACAAAAAA TCCCAC GTAAAG GTGGGA TTGAAAGTGTTGCAA Shewmr4_2305 2752707 - 2752099 - | DoxX family protein TERM 3347 2752753 - 2752766 + r 86 -8.1 -4.66609 | AGGGATTAATCTTTC GTGGC TTTT GCCAC TTTTTCGATCCCCTC Shewmr4_2306 2753615 - 2752743 - | hypothetical protein TERM 3348 2752802 - 2752821 + g 72 -3.6 -4.84359 | overlap 2752803 TTAGTTCACGAAGAT CCTGAATA AGCT TATTCAGC TTTTTATAAAAATGC TERM 3349 2752883 - 2752899 + g 83 -8.7 -4.2803 | opp_overlap 2752878 TCGTGAGTAACAAGC CGCCGAA GGC TTCGGTG TTTTGCCTTAAAATG Shewmr4_2307 2754955 - 2753726 - | aminoglycoside phosphotransferase Shewmr4_2308 2755711 - 2755046 - | nicotinamide mononucleotide transporter PnuC Shewmr4_2309 2756040 - 2755780 - | hypothetical protein Shewmr4_2310 2758334 - 2756136 - | TonB-dependent receptor TERM 3350 2758127 - 2758138 + g 78 -2.2 -5.26316 | CATCGATAACGGTAA TGCT CGAT GGCA TTTTTTCTAAACTGG TERM 3351 2758567 - 2758539 - R 93 -13.3 -2.76087 | opp_overlap 2758545, overlap 2758545 AAGACACTTTGAAAT TAAAAATGCCAGC ATT GCTGGCATTTTTT GGCTTAATGGCCGTT TERM 3352 2758561 - 2758545 - R 100 -12.3 -4.98531 | opp_overlap 2758545, overlap 2758539 CTTTGAAATTAAAAA TGCCAGC ATT GCTGGCA TTTTTTGGCTTAATG TERM 3353 2758545 - 2758561 + r 100 -12.3 -5.17576 | opp_overlap 2758545 2758539 CTTTGAAATTAAAAA TGCCAGC ATT GCTGGCA TTTTTTGGCTTAATG Shewmr4_2311 2759062 - 2758670 - | hypothetical protein Shewmr4_2312 2759657 - 2759193 - | thioesterase superfamily protein Shewmr4_2313 2760171 - 2759644 - | hypothetical protein TERM 3354 2759769 - 2759744 - G 76 -7.5 -4.38712 | opp_overlap 2759753, overlap 2759746 2759747 CTGATCCGCATAAAA GAGCCCACCGC ATGG GCGATAGGATC ATCGATGCTGTCCTG Shewmr4_2314 2760524 - 2760168 - | histidine triad (HIT) protein Shewmr4_2315 2760670 - 2762436 + | peptidase M61 domain-containing protein TERM 3355 2762470 - 2762506 + T 100 -11.8 -4.88895 | gap 1, opp_overlap 2762475, overlap 2762475 TTAACCCATAAAGCA CA-AAAGGGGCAATCGT ATCG ACGATTGCCCCTTTCTA TTTGTTTCTTTGTTT TERM 3356 2762475 - 2762500 + T 100 -17.7 -4.52349 | opp_overlap 2762475, overlap 2762470 CCATAAAGCACAAAA GGGGCAATCGT ATCG ACGATTGCCCC TTTCTATTTGTTTCT TERM 3357 2762500 - 2762475 - T 100 -17.7 -4.64846 | opp_overlap 2762470 2762475 CCATAAAGCACAAAA GGGGCAATCGT ATCG ACGATTGCCCC TTTCTATTTGTTTCT Shewmr4_2316 2763197 - 2762562 - | LuxR family transcriptional regulator Shewmr4_2317 2763493 - 2764239 + | cytochrome B561 TERM 3358 2764279 - 2764262 - T 100 -12.7 -5.50925 | opp_overlap 2764262 AATGAACATAAAAAA CGCCAGC GATC GCTGGCG TTTTTTTATAAAGCT TERM 3359 2764262 - 2764279 + T 100 -12.7 -5.61596 | opp_overlap 2764262 AATGAACATAAAAAA CGCCAGC GATC GCTGGCG TTTTTTTATAAAGCT Shewmr4_2318 2764661 - 2764311 - | cytochrome c3 TERM 3360 2764979 - 2764933 - R 100 -10.3 -5.35224 | opp_overlap 2764948, overlap 2764948 CGTAGAAAAAGAAAA GCCCCAATAAAAAAAGGAGAC GCTAG GTCTCCTTTTTTGATCTGCGC TTACGACTACCTAGT TERM 3361 2764964 - 2764948 - R 100 -8 -5.7946 | opp_overlap 2764948, overlap 2764933 GCCCCAATAAAAAAA GGAGAC GCTAG GTCTCC TTTTTTGATCTGCGC TERM 3362 2764948 - 2764964 + r 95 -8 -5.21709 | opp_overlap 2764948 2764933 GCCCCAATAAAAAAA GGAGAC GCTAG GTCTCC TTTTTTGATCTGCGC Shewmr4_2319 2766906 - 2764999 - | AMP-dependent synthetase and ligase TERM 3363 2765095 - 2765111 + g 71 -7.3 -4.12188 | CGCTGGCGCCGTATA TTGCTGA TTA TCGGCAA TTTTACGCATAGTGC Shewmr4_2320 2767133 - 2768815 + | peptidoglycan binding domain-containing protein TERM 3364 2769159 - 2769169 + G 71 -5.4 -4.56597 | opp_overlap 2769166 TTTGATATCACGACC CGAA GCA TTCG TTTTTACGAAGACCA Shewmr4_2321 2769087 - 2769491 + | MerR family transcriptional regulator TERM 3365 2770622 - 2770608 - g 70 -9.2 -3.6003 | opp_overlap 2770607 2770608 GAAACCACTCGCAAA GACGCC GCG GGCGCC ATTCTTTACAGCGCG Shewmr4_2322 2769645 - 2770814 + | isovaleryl-CoA dehydrogenase TERM 3366 2771132 - 2771148 + G 73 -8.7 -3.65425 | opp_overlap 2771132 2771131 CGCCCTTTTTAGAAT TGTCGCA ATT TGCGGCA TTTGAAGTCTATGAC TERM 3367 2771622 - 2771593 - g 79 -11.3 -3.62597 | GCGACCGGTGAAGAA GTCAGCGCCGAAG AACT CGGCGGCGCCGAC GTACACACTAAAATT TERM 3368 2772350 - 2772340 - g 70 -3.2 -4.77036 | GCTGAGGATGAAAAA GCCT TCA AAGC ACCGATTATTGCCCA Shewmr4_2323 2770915 - 2772522 + | propionyl-CoA carboxylase TERM 3369 2773313 - 2773297 - g 70 -11.5 -2.66964 | opp_overlap 2773309, overlap 2773294 CGATTGATTACACCA GCGAGCG CAT CGCCCGC ATTCGGGTATCTGAT Shewmr4_2324 2772567 - 2773412 + | methylglutaconyl-CoA hydratase TERM 3370 2773565 - 2773540 - g 76 -5.3 -4.84359 | CGATGCCGATAAAAA CGCGCGCCATG TTGC CATGGCTGACG AATCGTTTTACTTAG TERM 3371 2773889 - 2773878 - g 76 -5.8 -4.62471 | CCGAAGCCTTAAAAA TCGG CTTC CCGA TGCTGATTAAAGCCG TERM 3372 2775356 - 2775331 - g 71 -10.5 -3.16217 | opp_overlap 2775331 2775333 2775351, overlap 2775322 2775329 2775333 GATGAAGATGGAATA CACCATCGAAG CGCC CTTCGACGGTA TTGTTACCGAGTTCT TERM 3373 2775354 - 2775333 - g 71 -10.9 -3.136 | opp_overlap 2775331 2775333 2775351, overlap 2775322 2775331 2775329 TGAAGATGGAATACA CCATCGAAG CGCC CTTCGACGG TATTGTTACCGAGTT Shewmr4_2325 2773412 - 2775451 + | 3-methylcrotonoyl-CoA carboxylase, alpha subunit Shewmr4_2326 2775452 - 2776399 + | hydroxymethylglutaryl-CoA lyase TERM 3374 2776814 - 2776796 - g 74 -3.7 -5.00616 | opp_overlap 2776797 2776810, overlap 2776797 CGCTGGCGGAAAAAA TCCGCGC GGGCG GCGCAGG TATTCCAGCATTCTT Shewmr4_2327 2776468 - 2777172 + | 3-oxoacid CoA-transferase, A subunit TERM 3375 2777519 - 2777537 + G 70 -2.3 -4.91109 | TAAACAAACCGTCAC CGCGGTA AAAGG TGCCTCG TTTTTCTCCTCCGCC Shewmr4_2328 2777295 - 2777951 + | butyryl-CoA:acetate CoA transferase TERM 3376 2778084 - 2778064 - f 100 -11.2 -4.59773 | opp_overlap 2778064 TTTTAGTTTTAAAAA GCCCAGAA GATGA TTCTGGGC TTTTTATTGCTTTGC TERM 3377 2778064 - 2778084 + F 100 -11.2 -5.24551 | opp_overlap 2778064 TTTTAGTTTTAAAAA GCCCAGAA GATGA TTCTGGGC TTTTTATTGCTTTGC Shewmr4_2329 2778731 - 2779126 + | hypothetical protein TERM 3378 2779376 - 2779389 + G 91 -5.3 -5.38549 | CCGAGAATGCTTCAA GTTAC AATT GTAAC TTTTTATTCTTTACC Shewmr4_2330 2779123 - 2780994 + | hypothetical protein Shewmr4_2331 2781560 - 2782162 + | ThiJ/PfpI domain-containing protein TERM 3379 2782246 - 2782266 + G 70 -10.3 -3.01924 | opp_overlap 2782243 2782239 2782240 AACACAAACTCACCA GCGCAGCCG AAC TGGCGGCGC TATTGGCGCAAGATG Shewmr4_2332 2782194 - 2782505 + | hypothetical protein TERM 3380 2783421 - 2783433 + G 70 -3.3 -4.85396 | ATCGCATTCCCCAAT CTCTG TTG CGGGG TTTTATTGTGCTTGT Shewmr4_2333 2782730 - 2783485 + | hypothetical protein TERM 3381 2783802 - 2783787 - g 74 -7.6 -4.16943 | opp_overlap 2783774 GGTCATATGGCAAAA GCCAAT GGTC ATTGGC AGCAGCTCGATGGTC Shewmr4_2334 2783559 - 2784242 + | negative transcriptional regulator Shewmr4_2335 2784242 - 2784682 + | GCN5-related N-acetyltransferase TERM 3382 2784716 - 2784736 + T 90 -11.1 -4.06502 | opp_overlap 2784716 2784717, overlap 2784717 AGCCCAAGTAAAGAA TCCGCCTTC TTA GAAGGCGGC TTTGATTTGCCCCTG TERM 3383 2784736 - 2784716 - T 93 -11.1 -4.08651 | opp_overlap 2784716 2784717, overlap 2784717 AGCCCAAGTAAAGAA TCCGCCTTC TTA GAAGGCGGC TTTGATTTGCCCCTG TERM 3384 2784717 - 2784735 + T 100 -14.6 -3.03419 | opp_overlap 2784717 2784716, overlap 2784716 GCCCAAGTAAAGAAT CCGCCTTC TTA GAAGGCGG CTTTGATTTGCCCCT TERM 3385 2784735 - 2784717 - T 100 -14.6 -3.04468 | opp_overlap 2784716 2784717, overlap 2784716 GCCCAAGTAAAGAAT CCGCCTTC TTA GAAGGCGG CTTTGATTTGCCCCT TERM 3386 2784743 - 2784761 + T 80 -8.8 -3.91084 | overlap 2784745 GAAGGCGGCTTTGAT TTGCCCCT GGA AGGGGCTA TTTCCTTACACCTAC TERM 3387 2784745 - 2784759 + T 89 -11.4 -3.54414 | overlap 2784743 AGGCGGCTTTGATTT GCCCCT GGA AGGGGC TATTTCCTTACACCT Shewmr4_2336 2785210 - 2784773 - | transposase IS200-family protein TERM 3388 2785318 - 2785294 - R 78 -9.9 -3.42056 | opp_overlap 2785297, overlap 2785297 AGCCTTAAGGGACAA TCACCACCGCC AGA GGCGGTGGTTT TGGGATGACAATAAA TERM 3389 2785315 - 2785297 - R 100 -16 -2.86539 | opp_overlap 2785297, overlap 2785294 CTTAAGGGACAATCA CCACCGCC AGA GGCGGTGG TTTTGGGATGACAAT TERM 3390 2785297 - 2785315 + r 100 -16 -4.13945 | opp_overlap 2785297 2785294 CTTAAGGGACAATCA CCACCGCC AGA GGCGGTGG TTTTGGGATGACAAT TERM 3391 2785335 - 2785362 + r 100 -17.2 -3.65827 | opp_overlap 2785335 GGGATGACAATAAAA TAGGCGCTTAAG TGAA CTTAAGCGCCTA TTTAGCTAAGCGTTC TERM 3392 2785362 - 2785335 - R 100 -17.2 -4.81212 | opp_overlap 2785335 GGGATGACAATAAAA TAGGCGCTTAAG TGAA CTTAAGCGCCTA TTTAGCTAAGCGTTC Shewmr4_2337 2788481 - 2785386 - | acriflavin resistance protein Shewmr4_2338 2789560 - 2788478 - | RND family efflux transporter MFP subunit TERM 3393 2789891 - 2789917 + r 93 -12.4 -3.06796 | opp_overlap 2789896, overlap 2789896 CAAATGGCAGGCACA AAAAAGGGCGAT TAA ATCGCCCTTTTG TTGACTGAGGTAGGA TERM 3394 2789896 - 2789912 + r 100 -12.3 -4.67982 | opp_overlap 2789896, overlap 2789891 GGCAGGCACAAAAAA GGGCGAT TAA ATCGCCC TTTTGTTGACTGAGG TERM 3395 2789912 - 2789896 - R 100 -12.3 -5.28176 | opp_overlap 2789896 2789891 GGCAGGCACAAAAAA GGGCGAT TAA ATCGCCC TTTTGTTGACTGAGG Shewmr4_2339 2791030 - 2789933 - | NlpB/DapX family lipoprotein Shewmr4_2340 2791918 - 2791034 - | dihydrodipicolinate synthase TERM 3396 2791764 - 2791816 + g 79 -12 -3.20382 | ACGTGCTCATTCATT GGCAGAGTCGCTGAC-TCGCCTGTGG TAC CCAC-GGCGACGATGGCGTCTGTGCC TTGGTCAATATGGAA Shewmr4_2341 2792091 - 2792642 + | glycine cleavage system transcriptional repressor, putative bcp 2792646 - 2793113 + | thioredoxin-dependent thiol peroxidase TERM 3397 2793189 - 2793205 + T 100 -9.4 -5.14563 | opp_overlap 2793189 AGTTGAACGCAAAAA GGCCCT TTGTC AGGGCC TTTTTTCATGAAAAA TERM 3398 2793205 - 2793189 - T 100 -9.4 -4.74504 | opp_overlap 2793189 AGTTGAACGCAAAAA GGCCCT TTGTC AGGGCC TTTTTTCATGAAAAA Shewmr4_2343 2793908 - 2793294 - | lysine exporter protein LysE/YggA TERM 3399 2793686 - 2793675 - G 74 -3.6 -5.01811 | GTACCAAATCAAAAA GGCG GCCC CACC AAAACTGGCCACATG TERM 3400 2794711 - 2794724 + G 70 -2.3 -5.00884 | TGGCAACACAGCATT CCCTC ATCG GAGAG TTTTTTAGAGGCGAT TERM 3401 2794802 - 2794786 - g 71 -6.6 -4.24204 | opp_overlap 2794785 CACTTACAGGCAAAA CCTTTG ATAGA CAAAGG CATATTGATTGAACT Shewmr4_2344 2794021 - 2794938 + | chromosome replication initiation inhibitor protein TERM 3402 2794984 - 2795032 + T 100 -10.7 -4.24606 | gap 1, opp_overlap 2795000, overlap 2795000 TGGTTAGTACAAATA GTTAGTGGATAAAAAACTGAGC GCTCTG GCTCAGTT-TTTATCTATTAGC TTTTACCTATCAGTT TERM 3403 2795000 - 2795017 + T 88 -7 -5.10064 | opp_overlap 2795000, overlap 2794984 TTAGTGGATAAAAAA CTGAGC GCTCTG GCTCAG TTTTTATCTATTAGC TERM 3404 2795017 - 2795000 - T 89 -7 -5.26316 | opp_overlap 2794984 2795000 TTAGTGGATAAAAAA CTGAGC GCTCTG GCTCAG TTTTTATCTATTAGC Shewmr4_2345 2796166 - 2795066 - | hypothetical protein Shewmr4_2346 2796608 - 2796375 - | SirA family protein TERM 3405 2796990 - 2797005 + G 80 -4.6 -5.12172 | AGTCGCCCACGCCAC GGGAGT TAAA ACGCCC TTTTATTTCTTCCTA Shewmr4_2347 2796721 - 2798190 + | peptidase M48, Ste24p TERM 3406 2798232 - 2798261 + F 89 -6.3 -5.34555 | gap 1, opp_overlap 2798232 2798233, overlap 2798234 GCTAATCCCTTATAA TTGCGCCCCGAACA TCC TGA-CGGGGCGCTG TTTTTTCTGCTATCA TERM 3407 2798234 - 2798259 + F 100 -11.1 -4.30057 | gap 1, opp_overlap 2798233 2798232, overlap 2798232 TAATCCCTTATAATT GCGCCCCGAACA TCC TGA-CGGGGCGC TGTTTTTTCTGCTAT Shewmr4_2348 2798314 - 2798664 + | arsenate reductase Shewmr4_2349 2798712 - 2799092 + | hypothetical protein Shewmr4_2350 2799519 - 2801474 + | hypothetical protein TERM 3408 2801588 - 2801570 - T 100 -14.6 -5.36441 | opp_overlap 2801570 GTTGGATACAAAAAA GCCCATCG TTA CGATGGGC TTTTTCAAAATTGTG TERM 3409 2801570 - 2801588 + T 100 -14.6 -4.63542 | opp_overlap 2801570 GTTGGATACAAAAAA GCCCATCG TTA CGATGGGC TTTTTCAAAATTGTG Shewmr4_2351 2802474 - 2801611 - | heat shock protein HtpX TERM 3410 2803004 - 2803014 + G 74 -6.8 -4.28994 | opp_overlap 2803002 2803004 CCAAGCGATTAAAGA TGCC GAT GGCA TTTTGATCGGTGGTG Shewmr4_2352 2802762 - 2803472 + | peptidase E TERM 3411 2804193 - 2804174 - g 78 -6.4 -4.75219 | CAATTATCAAGAAAA TGCCGC GATTTGGG GCGGCA CTCCCACTAAGTTTT mdoG 2803881 - 2805464 + | glucan biosynthesis protein G TERM 3412 2805539 - 2805503 - f 100 -17.6 -3.01924 | gap 1, opp_overlap 2805513, overlap 2805513 GAGCTTTGCTTAACA CCAT-AAAAAACGCCGG AAGT CCGGCGTTTTTTTATGG GTAAAATCGATATTG TERM 3413 2805513 - 2805528 + F 100 -11.8 -5.64274 | opp_overlap 2805513 2805503 TAACACCATAAAAAA CGCCGG AAGT CCGGCG TTTTTTTATGGGTAA TERM 3414 2805528 - 2805513 - f 100 -11.8 -5.36965 | opp_overlap 2805513, overlap 2805503 TAACACCATAAAAAA CGCCGG AAGT CCGGCG TTTTTTTATGGGTAA Shewmr4_2354 2805850 - 2805999 + | hypothetical protein Shewmr4_2355 2806142 - 2807110 + | hypothetical protein TERM 3415 2807167 - 2807136 - T 100 -16.1 -3.17714 | opp_overlap 2807136 2807142, overlap 2807126 2807142 TTAAATTTGTACTAA CAAAAACAGAGGC GATATA GCCTCTGTTTTTG TATCTCATGTGCCTT TERM 3416 2807136 - 2807167 + T 100 -16.1 -2.98491 | opp_overlap 2807126 2807136 2807142, overlap 2807142 TTAAATTTGTACTAA CAAAAACAGAGGC GATATA GCCTCTGTTTTTG TATCTCATGTGCCTT TERM 3417 2807161 - 2807142 - T 100 -9.3 -5.1356 | opp_overlap 2807136 2807142, overlap 2807136 TTGTACTAACAAAAA CAGAGGC GATATA GCCTCTG TTTTTGTATCTCATG TERM 3418 2807142 - 2807161 + T 100 -9.3 -5.05601 | opp_overlap 2807142 2807136, overlap 2807136 TTGTACTAACAAAAA CAGAGGC GATATA GCCTCTG TTTTTGTATCTCATG bioD 2807891 - 2807196 - | dithiobiotin synthetase TERM 3419 2807233 - 2807252 + g 70 -8.6 -3.68988 | gap 1 ATATCAATAAAGTTG GCGGCATGC TCC GCAT-CCGC TTGTGTTAGATGAGG TERM 3420 2807600 - 2807588 - G 77 -9.1 -4.08216 | opp_overlap 2807586 2807584 2807588 2807594 CTAGTTTTGCCAAAA TCGCC TCT GGCGA TATGTTAATCCCCAG Shewmr4_2357 2808761 - 2807934 - | biotin biosynthesis protein BioC Shewmr4_2358 2810136 - 2808916 - | 8-amino-7-oxononanoate synthase TERM 3421 2809220 - 2809230 + g 76 -5.4 -4.87291 | opp_overlap 2809220 2809218 TTGAACAACAAGATA TTGC TCT GCAA TTTTTGCTTAAGCTC TERM 3422 2809556 - 2809543 - G 70 -9.5 -3.32294 | overlap 2809552 GCAAAGTGCGGATAA CGCCG AAAT CGGCG CGATATCGCCATCCA TERM 3423 2810121 - 2810135 + g 87 -4.3 -5.5112 | AACCCAGTTTTGAGG TGAGT GGTGA ACTCA TTTTTTCTTACTCAA TERM 3424 2810271 - 2810328 + r 70 -5.7 -4.25283 | gap 2 CTGAGTCTCGCCGCC CGCACTATCTTTGGAGCCTGCGCTTCG CCTTAA CGAAGCACAAG-TCCAAAGAT-GCGAG TTTTACTGAGGCGAT Shewmr4_2359 2811405 - 2810353 - | biotin synthase TERM 3425 2812836 - 2812812 - g 75 -10.7 -3.39895 | CGGGCGATGAAGCAA GTGGCAGCG ACGATTA CGCCGCCAC AGGCCGCTCAAACCG Shewmr4_2360 2811528 - 2812892 + | aminotransferase Shewmr4_2361 2816351 - 2812911 - | multi-sensor hybrid histidine kinase TERM 3426 2815620 - 2815605 - G 74 -3.9 -5.03994 | CGGCATACATAAAAA CGCCG CCATGC CGACG AGTAGCTCAGGCATT TERM 3427 2816206 - 2816193 - G 70 -4.5 -4.66609 | GACCGTACCTAAAAA GCTCC AGGA AGAGC AATAAACCGCCAGAC TERM 3428 2816861 - 2816849 - g 76 -7.7 -4.36127 | GCGAACAACGTAAAA TCACC TAC GGTGA GCTACACACTCAAGT Shewmr4_2362 2816527 - 2818479 + | acetyl-CoA synthetase TERM 3429 2818487 - 2818524 + F 100 -17.9 -3.70149 | opp_overlap 2818481 2818480, overlap 2818473 2818488 2818490 ACGAGTAATCGTTAT CCAGCGCTTAATCGTGA TTTA TCACGGTTAAGCGCTGC TTTAGCTCCTGTACG TERM 3430 2818488 - 2818523 + F 100 -21.4 -2.81768 | opp_overlap 2818481 2818480, overlap 2818473 2818487 2818490 CGAGTAATCGTTATC CAGCGCTTAATCGTGA TTTA TCACGGTTAAGCGCTG CTTTAGCTCCTGTAC TERM 3431 2818490 - 2818521 + F 100 -18.2 -2.95384 | opp_overlap 2818481 2818480, overlap 2818473 2818488 2818487 AGTAATCGTTATCCA GCGCTTAATCGTGA TTTA TCACGGTTAAGCGC TGCTTTAGCTCCTGT TERM 3432 2818625 - 2818645 + F 100 -8.3 -5.69379 | CCCCTTTCTCTTAGT TGCCCCT CCAACCA AGGGGCA TTTTTTTGGTTCTGT TERM 3433 2819711 - 2819727 + G 76 -7.9 -4.41616 | overlap 2819713 ATTGCGATTTTACGC CCCACCG CAT CGGTGAG TTTGTTTCAGCAAAT Shewmr4_2363 2818706 - 2820478 + | type III restriction enzyme, res subunit grxA 2820539 - 2820799 + | glutaredoxin 1 TERM 3434 2820841 - 2820813 - T 100 -14.1 -4.6821 | opp_overlap 2820813 2820819, overlap 2820819 AATTCTAATACAAAA TAAAAAGGAGACC TGA GATCTCCTTTTTA TTTATCTAAATAAAA TERM 3435 2820813 - 2820841 + T 100 -11.9 -4.0641 | opp_overlap 2820813 2820819, overlap 2820819 AATTCTAATACAAAA TAAAAAGGAGACC TGA GATCTCCTTTTTA TTTATCTAAATAAAA TERM 3436 2820819 - 2820835 + T 91 -6.5 -5.42975 | opp_overlap 2820813 2820819, overlap 2820813 AATACAAAATAAAAA GGAGACC TGA GATCTCC TTTTTATTTATCTAA TERM 3437 2820835 - 2820819 - T 100 -8.7 -5.60556 | opp_overlap 2820819 2820813, overlap 2820813 AATACAAAATAAAAA GGAGACC TGA GATCTCC TTTTTATTTATCTAA Shewmr4_2365 2822022 - 2820859 - | hypothetical protein TERM 3438 2823219 - 2823269 + r 73 -2.8 -5.0925 | gap 4, opp_overlap 2823240, overlap 2823226 AACGACCCATTTACT GGTATT-T-TGCG-CCTC-GAACGAC CTC GCCGTTCCGAGGGCGCCTATAATACC TTTTTCATTTTCCCA TERM 3439 2823327 - 2823341 + r 76 -2.8 -5.32565 | opp_overlap 2823327, overlap 2823320 2823319 CGTTTGCATGAAAAA CAGACT AAG AGTATG TTTTTTAGTTAATTA Shewmr4_2366 2824106 - 2823354 - | hypothetical protein TERM 3440 2824078 - 2824030 - G 76 -11 -3.18737 | gap 1, overlap 2824028 2824039 GAACCACCAGCAATA TCTTCAACAGGAGCAGGAGCTGC AACT GCAGCTCCTGCGCC-GAAGAACA TTGCCGTAATTAAGA TERM 3441 2824070 - 2824039 - G 100 -20.2 -3.06315 | overlap 2824030 2824028 GCAATATCTTCAACA GGAGCAGGAGCTGC AACT GCAGCTCCTGCGCC GAAGAACATTGCCGT Shewmr4_2367 2824667 - 2824131 - | OmpA/MotB domain-containing protein Shewmr4_2368 2826042 - 2824714 - | TolB domain-containing protein TERM 3442 2825103 - 2825068 - G 70 -9 -3.57918 | opp_overlap 2825068, overlap 2825069 ATCTACACGATATAA CTGTGGTCTACCACCG CGCT CGGAGGTAAACAACAA TGACTTGCCATCGGG TERM 3443 2826052 - 2826083 + r 70 -5.4 -4.49958 | gap 1, opp_overlap 2826061, overlap 2826056 TTTCATGGGACTCCT TTAA-TTAAACGTTG GTT CAACGATTAAGTTAA TTTCTTTCATCAAGT TERM 3444 2826073 - 2826061 - R 72 -7.7 -3.90291 | opp_overlap 2826056 2826052 ACTCCTTTAATTAAA CGTTG GTT CAACG ATTAAGTTAATTTCT Shewmr4_2369 2827074 - 2826052 - | TolA family protein Shewmr4_2370 2827509 - 2827075 - | biopolymer transport protein ExbD/TolR Shewmr4_2371 2828195 - 2827509 - | MotA/TolQ/ExbB proton channel Shewmr4_2372 2828586 - 2828185 - | 4-hydroxybenzoyl-CoA thioesterase TERM 3445 2828738 - 2828721 - R 83 -9.1 -4.08958 | opp_overlap 2828721 ATTTGTAAATAACAA TGGGGCC AAAC GACCCCA TTTCATTAACATAGT Shewmr4_2373 2830940 - 2828757 - | prolyl oligopeptidase TERM 3446 2830923 - 2830909 - G 83 -10 -4.24342 | GTGGCCACTAATAAA CCTTGC TGG GCAAGG CGAAATCTTAATGCC TERM 3447 2831394 - 2831414 + r 100 -15.5 -5.81412 | ATGCATTTTTTTGCG GCCCGCTTA GAT TAAGCGGGC TTTTTTTTACCTCGA TERM 3448 2831454 - 2831466 + r 85 -4.1 -5.4833 | GCCGCGAAAATCTAG CGATT TAC AGTCG TTTTTTGTTACATAA TERM 3449 2831660 - 2831627 - R 88 -11.1 -3.86897 | opp_overlap 2831630 2831633, overlap 2831630 2831633 TGCACGCTTCATAAA TGACAATGCCAAGTC CGAA GACTTGGCATTGTTG TTTGTAACGTATTAG TERM 3450 2831630 - 2831657 + r 100 -17.2 -4.08279 | opp_overlap 2831630 2831627 2831633, overlap 2831633 ACGCTTCATAAATGA CAATGCCAAGTC CGAA GACTTGGCATTG TTGTTTGTAACGTAT TERM 3451 2831657 - 2831630 - R 100 -17.2 -3.01125 | opp_overlap 2831630 2831633, overlap 2831627 2831633 ACGCTTCATAAATGA CAATGCCAAGTC CGAA GACTTGGCATTG TTGTTTGTAACGTAT TERM 3452 2831654 - 2831633 - R 100 -13.1 -3.64915 | opp_overlap 2831630 2831633, overlap 2831630 2831627 CTTCATAAATGACAA TGCCAAGTC CGAA GACTTGGCA TTGTTGTTTGTAACG TERM 3453 2831633 - 2831654 + r 100 -13.1 -4.15703 | opp_overlap 2831633 2831630 2831627, overlap 2831630 CTTCATAAATGACAA TGCCAAGTC CGAA GACTTGGCA TTGTTGTTTGTAACG Shewmr4_2374 2832604 - 2831732 - | OmpA/MotB domain-containing protein TERM 3454 2832223 - 2832206 - G 70 -3.4 -4.77567 | gap 1 ATCGGCATAATAAAA CGTCGGC TCCAT GCC-ACG GCTCAACTCGGTCAA Shewmr4_2375 2832747 - 2833415 + | ribonuclease T TERM 3455 2833472 - 2833457 - T 100 -10.4 -5.45652 | opp_overlap 2833457 ACGCCCAATAAAAAA GCTGCC CAAA GGCAGC TTTTTTATTGGGCGA TERM 3456 2833457 - 2833472 + T 100 -10.4 -5.4505 | opp_overlap 2833457 ACGCCCAATAAAAAA GCTGCC CAAA GGCAGC TTTTTTATTGGGCGA Shewmr4_2376 2834104 - 2833499 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 3457 2833532 - 2833553 + g 70 -9.5 -3.26546 | gap 1, opp_overlap 2833531 2833530 TTCTGCTAAGTAAGC CGCAA-CACC TTC GGTGCTTGCG TTCATACCTTTGTCG TERM 3458 2835351 - 2835362 + G 71 -5.8 -4.3767 | GGCGTGCGCATGATG GCCA ATAT TGGC TTTATTATGATCTCC Shewmr4_2377 2834475 - 2835794 + | Na+/H+ antiporter NhaC TERM 3459 2835819 - 2835850 + T 100 -19 -3.72576 | opp_overlap 2835819 2835821 2835826, overlap 2835826 TCATGGGCGTTAACA TACAAAAGCGTGGA TAAT TCCACGCTTTTGTA TTTGCTAGGCACACA TERM 3460 2835850 - 2835819 - T 100 -19 -3.02144 | opp_overlap 2835819 2835826, overlap 2835821 2835826 TCATGGGCGTTAACA TACAAAAGCGTGGA TAAT TCCACGCTTTTGTA TTTGCTAGGCACACA TERM 3461 2835848 - 2835821 - T 100 -17.2 -3.06815 | opp_overlap 2835819 2835826, overlap 2835819 2835826 ATGGGCGTTAACATA CAAAAGCGTGGA TAAT TCCACGCTTTTG TATTTGCTAGGCACA TERM 3462 2835826 - 2835843 + T 100 -11.3 -4.82128 | opp_overlap 2835821 2835819 2835826, overlap 2835819 CGTTAACATACAAAA GCGTGGA TAAT TCCACGC TTTTGTATTTGCTAG TERM 3463 2835843 - 2835826 - T 100 -11.3 -4.67943 | opp_overlap 2835826 2835819, overlap 2835821 2835819 CGTTAACATACAAAA GCGTGGA TAAT TCCACGC TTTTGTATTTGCTAG Shewmr4_2378 2836533 - 2835868 - | RDD domain-containing protein TERM 3464 2836627 - 2836617 - R 75 -3.2 -5.14985 | TTAAACACAGAAAAA TAGC ATT GCCA CCGTTCTAACTCAAC TERM 3465 2836704 - 2836719 + r 91 -10.4 -4.24002 | opp_overlap 2836704 AAAGCGCATAAAAAA GGGAGC CTAA GCTCCC TTTTGCAATTTAAGA TERM 3466 2836719 - 2836704 - R 100 -10.4 -5.28826 | opp_overlap 2836704 AAAGCGCATAAAAAA GGGAGC CTAA GCTCCC TTTTGCAATTTAAGA upp 2837383 - 2836757 - | uracil phosphoribosyltransferase TERM 3467 2837961 - 2837948 - g 80 -3.1 -5.31877 | gap 1, opp_overlap 2837957, overlap 2837950 2837951 2837953 2837955 2837957 ATCGATTACAAAAAA CACGAC ACA GTCG-G TATCGACTTAGTGGC TERM 3468 2837960 - 2837950 - g 74 -6.8 -4.29153 | opp_overlap 2837957, overlap 2837948 2837951 2837953 2837955 2837957 CGATTACAAAAAACA CGAC ACA GTCG GTATCGACTTAGTGG Shewmr4_2380 2837711 - 2838748 + | phosphoribosylaminoimidazole synthetase TERM 3469 2839012 - 2838990 - g 71 -10.6 -3.12324 | opp_overlap 2838989 2838994 2838996, overlap 2838988 2838987 2838994 AACGATTGAAAAGTA CCAACCCGAT TTA ATCGTGTTGG CTGGATTTATGCGTA Shewmr4_2381 2838748 - 2839392 + | phosphoribosylglycinamide formyltransferase TERM 3470 2839415 - 2839431 + F 100 -12.3 -5.94597 | opp_overlap 2839415 CTCACGAAAAAAAAA GAGACCC TAA GGGTCTC TTTTTTTTCGTCTTG TERM 3471 2839431 - 2839415 - f 100 -12.3 -6.15828 | opp_overlap 2839415 CTCACGAAAAAAAAA GAGACCC TAA GGGTCTC TTTTTTTTCGTCTTG TERM 3472 2840156 - 2840178 + G 76 -12.8 -2.64099 | overlap 2840155 CCGATATTCTGGCGG GGTTTCAAGC GGG GCTTGAGACC ATTCTGGTCACCAGC Shewmr4_2382 2839534 - 2840280 + | UMP phosphatase Shewmr4_2383 2840478 - 2842151 + | peptidase M28 TERM 3473 2842187 - 2842210 + F 100 -14 -4.17048 | opp_overlap 2842190, overlap 2842190 ACTGAAACATCCCTA TAAGGCACCT TGAG AGGTGCCTTA TTATTTTACCAGCCG TERM 3474 2842190 - 2842207 + F 100 -11.3 -4.20868 | opp_overlap 2842190, overlap 2842187 GAAACATCCCTATAA GGCACCT TGAG AGGTGCC TTATTATTTTACCAG TERM 3475 2842207 - 2842190 - f 86 -11.3 -3.34029 | opp_overlap 2842190 2842187 GAAACATCCCTATAA GGCACCT TGAG AGGTGCC TTATTATTTTACCAG asnB 2842621 - 2844285 + | asparagine synthetase B TERM 3476 2844306 - 2844335 + T 100 -12.3 -3.75898 | opp_overlap 2844308 2844313, overlap 2844308 2844313 AACGCATGTCATCAA AATAAAAGCCACC CTAG GGTGGCTTTTATC TTTCACTCATTTCTT TERM 3477 2844333 - 2844308 - T 100 -14.9 -4.26903 | opp_overlap 2844306 2844308 2844313, overlap 2844313 CGCATGTCATCAAAA TAAAAGCCACC CTAG GGTGGCTTTTA TCTTTCACTCATTTC TERM 3478 2844308 - 2844333 + T 100 -14.9 -3.44924 | opp_overlap 2844308 2844313, overlap 2844306 2844313 CGCATGTCATCAAAA TAAAAGCCACC CTAG GGTGGCTTTTA TCTTTCACTCATTTC TERM 3479 2844313 - 2844328 + T 100 -10.4 -4.80455 | opp_overlap 2844313 2844308, overlap 2844308 2844306 GTCATCAAAATAAAA GCCACC CTAG GGTGGC TTTTATCTTTCACTC TERM 3480 2844328 - 2844313 - T 100 -10.4 -5.13722 | opp_overlap 2844308 2844306 2844313, overlap 2844308 GTCATCAAAATAAAA GCCACC CTAG GGTGGC TTTTATCTTTCACTC Shewmr4_2385 2845452 - 2844445 - | patatin TERM 3481 2845547 - 2845528 - R 76 -2.8 -5.36441 | gap 1 TTGCGACAGAAAAAA CCG-GATAG AAT CAATCGCGG TAATCGAAAATTAAA TERM 3482 2845796 - 2845765 - R 100 -16.8 -4.31412 | opp_overlap 2845767 2845770 AAACATCGAGTAAAA GATAACGAGCCAAC CCGA GTTAGCTCGTTATC TGTAAGGGTCTATCC TERM 3483 2845767 - 2845794 + r 81 -11.4 -2.8937 | opp_overlap 2845765, overlap 2845770 ACATCGAGTAAAAGA TAACGAGCCAAC CCGA GTTAGCTCGTTA TCTGTAAGGGTCTAT TERM 3484 2845770 - 2845791 + r 75 -8.7 -3.59202 | opp_overlap 2845765, overlap 2845767 TCGAGTAAAAGATAA CGAGCCAAC CCGA GTTAGCTCG TTATCTGTAAGGGTC Shewmr4_2386 2848042 - 2845814 - | TonB-dependent siderophore receptor TERM 3485 2846315 - 2846333 + g 80 -3.1 -5.2853 | gap 1 CTTGCCGGTATCGAG CG-GGTTC GCCT GAGCCACG TTTTGTTTTTCAATA TERM 3486 2847761 - 2847786 + g 70 -3.3 -4.86033 | gap 1 CACTTGTACCGACTG CGGCAGCTCCAT CAC ATTGA-TTGCCG TTTTTGTACCAATTT TERM 3487 2848058 - 2848080 + r 76 -10.6 -2.93236 | overlap 2848061 AAAGTCCCCCAACCT CGAGTAGACC TGT GGTCTACTCC TGTCATCTTAAGTTG TERM 3488 2848061 - 2848077 + r 76 -10.9 -2.70232 | overlap 2848058 GTCCCCCAACCTCGA GTAGACC TGT GGTCTAC TCCTGTCATCTTAAG TERM 3489 2848231 - 2848268 + r 78 -5.6 -4.76041 | opp_overlap 2848240, overlap 2848240 CTAGGCCAACGCCAG CATCAAAAAGCCAGCA TCACTC TGCTGGCTTATTACTG TTTTTACTGGATATA TERM 3490 2848259 - 2848240 - R 100 -9.3 -4.77036 | opp_overlap 2848240 2848231 CGCCAGCATCAAAAA GCCAGCA TCACTC TGCTGGC TTATTACTGTTTTTA TERM 3491 2848240 - 2848259 + r 83 -9.3 -3.91821 | opp_overlap 2848240, overlap 2848231 CGCCAGCATCAAAAA GCCAGCA TCACTC TGCTGGC TTATTACTGTTTTTA Shewmr4_2387 2850093 - 2848303 - | acyl-CoA dehydrogenase domain-containing protein Shewmr4_2388 2850320 - 2851168 + | aldose 1-epimerase TERM 3492 2851217 - 2851237 + T 100 -12.6 -4.73682 | GGTTGACAGTTTTTA GGCCAGCT CCAGT AGCTGGCC TTTTCTATTGTGCAC Shewmr4_2389 2852017 - 2851214 - | integrase catalytic subunit TERM 3493 2851723 - 2851773 + g 70 -2.6 -5.01546 | gap 1, opp_overlap 2851740 CATCATGCAGTCCTT CCTCTTTCAGCAGAT-TAGGATG CTTCTT CATCCAGTGTTTGCTGAACGTGG TTTTTGTGTAGCTTT TERM 3494 2852034 - 2852061 + r 71 -4 -4.8622 | opp_overlap 2852019, overlap 2852019 2852019 CCCGCAGCACGACAT GCGGCAGCGAGG TTTA TTTCGCCGTTGC TTTTTGCTTGCCAGA Shewmr4_2390 2852442 - 2852047 - | transposase TERM 3495 2852517 - 2852499 - R 75 -7.4 -4.30014 | opp_overlap 2852499 CCCATCAATGCAAAA GCCCAG AGCATGA CTGGGC TTTTTTATGCCATCA TERM 3496 2852499 - 2852517 + r 91 -7.4 -5.26316 | opp_overlap 2852499 CCCATCAATGCAAAA GCCCAG AGCATGA CTGGGC TTTTTTATGCCATCA Shewmr4_2391 2853439 - 2852564 - | 6-phosphogluconate dehydrogenase, NAD-binding TERM 3497 2853737 - 2853762 + r 100 -9 -4.82901 | opp_overlap 2853738 2853742, overlap 2853738 TGTTCGACAGAAACA ACAAAGGCGC ACACTG GCGCCTTTGC TTTTTATCACGAACC TERM 3498 2853761 - 2853738 - R 100 -12.5 -4.14627 | opp_overlap 2853738 2853737, overlap 2853742 GTTCGACAGAAACAA CAAAGGCGC ACACTG GCGCCTTTG CTTTTTATCACGAAC TERM 3499 2853738 - 2853761 + r 100 -12.5 -3.49419 | opp_overlap 2853738 2853742, overlap 2853737 GTTCGACAGAAACAA CAAAGGCGC ACACTG GCGCCTTTG CTTTTTATCACGAAC TERM 3500 2853757 - 2853742 - R 81 -7.5 -4.65458 | opp_overlap 2853738 2853737, overlap 2853738 GACAGAAACAACAAA GGCGC ACACTG GCGCC TTTGCTTTTTATCAC Shewmr4_2392 2854261 - 2853782 - | thioesterase superfamily protein Shewmr4_2393 2854746 - 2854378 - | hypothetical protein TERM 3501 2854873 - 2854915 + r 100 -14.5 -3.452 | gap 1, opp_overlap 2854886, overlap 2854876 2854886 TATCCGGCACAATTC GAGC-ATAAAAAAATGCGCC CATA GGCGCATTTTTTTATCGATC TTATCGCTGTTTAGA TERM 3502 2854876 - 2854912 + r 100 -14.8 -2.56828 | gap 1, opp_overlap 2854886, overlap 2854873 2854886 CCGGCACAATTCGAG C-ATAAAAAAATGCGCC CATA GGCGCATTTTTTTATCG ATCTTATCGCTGTTT TERM 3503 2854886 - 2854901 + r 100 -10.4 -5.65177 | opp_overlap 2854886, overlap 2854876 2854873 TCGAGCATAAAAAAA TGCGCC CATA GGCGCA TTTTTTTATCGATCT TERM 3504 2854901 - 2854886 - R 100 -10.4 -5.67063 | opp_overlap 2854876 2854873 2854886 TCGAGCATAAAAAAA TGCGCC CATA GGCGCA TTTTTTTATCGATCT Shewmr4_2394 2856164 - 2854926 - | 3-oxoacyl-[acyl-carrier-protein] synthase II TERM 3505 2856356 - 2856335 - R 100 -15.9 -5.45802 | opp_overlap 2856335 GGGGTAAAACAAAAA CAGGCGGCA TATT TGCCGCCTG TTCTCTAGAATTCAG TERM 3506 2856335 - 2856356 + r 100 -15.9 -3.52192 | opp_overlap 2856335 GGGGTAAAACAAAAA CAGGCGGCA TATT TGCCGCCTG TTCTCTAGAATTCAG TERM 3507 2856398 - 2856422 + r 73 -7.2 -4.24123 | CTTAGAAACGTAATC GATCGCTGCT TGAAC AGTAGTGATC TTTTCAGCTTCTTCA Shewmr4_2395 2856607 - 2856374 - | acyl carrier protein TERM 3508 2856644 - 2856629 - R 70 -7.6 -3.64703 | TCTTTCCTATTCAAA TTACGC ACTT GCGTAA GATTGCGAGTAGTTT TERM 3509 2856690 - 2856710 + r 100 -12.7 -3.53761 | opp_overlap 2856683 CAATGCAAGCTTAGT TTTCGTGGT CTA ACCACGAAA TTTAGCGACCAATTG Shewmr4_2396 2857517 - 2856771 - | 3-oxoacyl-[acyl-carrier-protein] reductase Shewmr4_2397 2858453 - 2857527 - | [Acyl-carrier-protein] S-malonyltransferase TERM 3510 2858526 - 2858495 - R 83 -9.6 -3.93782 | TTATTGAACACTAAA CCGTTATCTTGG ACATCTAA CCAAGATAACAG TAGTCAGGAATGTAT Shewmr4_2398 2859517 - 2858558 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 3511 2858729 - 2858741 + g 70 -4.8 -4.59773 | opp_overlap 2858729 CACCACTTTATCTAA GCTC ATGTC GAGC TTTTTCGCCGTGGCA TERM 3512 2859433 - 2859444 + g 76 -4.4 -5.04987 | CAATCCATTGGTCAC TGGT TTCC ACCA TTTTTTCCAAATCTT Shewmr4_2399 2860555 - 2859527 - | putative glycerol-3-phosphate acyltransferase PlsX rpmF 2860741 - 2860571 - | 50S ribosomal protein L32 Shewmr4_2401 2861283 - 2860759 - | hypothetical protein Shewmr4_2402 2861541 - 2862155 + | maf protein Shewmr4_2403 2863063 - 2862317 - | HAD family hydrolase Shewmr4_2404 2864093 - 2863104 - | ribosomal large subunit pseudouridine synthase C TERM 3513 2863564 - 2863586 + g 73 -2.7 -5.00616 | gap 1, overlap 2863565 TGACGCAGTTGATCG TGCAGATGCT TAAG GGCA-CTGCG TTTTTTCGCCACCAG TERM 3514 2866409 - 2866395 - g 76 -2.8 -5.07011 | CACAGAAACCAAAAA GTCTGA CAG CCAAAC GGCCAATGCGAACCG TERM 3515 2867077 - 2867065 - g 75 -9.1 -3.90286 | opp_overlap 2867076, overlap 2867059 GATGATAAAGCGAAA CGCGA ATC TCGCG ATGGACAACGTCGTA TERM 3516 2867282 - 2867269 - g 76 -6.7 -4.53636 | ACCACAGAAGCAAAA GCAAC TGAA GTTGC CGCTGAACCGACTGT Shewmr4_2405 2864659 - 2867940 + | RNAse E TERM 3517 2867955 - 2867986 + F 100 -13.2 -4.09739 | opp_overlap 2867962, overlap 2867962 ATCGCCAAGTTGTTG TTAAAAAGCCATGC ACTT GCATGGCTTTTTTA TTTTCAGCAAATTAA TERM 3518 2867962 - 2867979 + F 100 -11.3 -5.79595 | opp_overlap 2867962, overlap 2867955 AGTTGTTGTTAAAAA GCCATGC ACTT GCATGGC TTTTTTATTTTCAGC TERM 3519 2867979 - 2867962 - f 100 -11.3 -4.56775 | opp_overlap 2867962 2867955 AGTTGTTGTTAAAAA GCCATGC ACTT GCATGGC TTTTTTATTTTCAGC TERM 3520 2868428 - 2868446 + G 71 -6 -4.37092 | TTATCCGCATTGTCC CCTATCCT GTG ATGATAGG TTTTGTGAACGGCCT Shewmr4_2406 2868067 - 2869644 + | sulphate transporter TERM 3521 2869726 - 2869668 - T 71 -8.8 -3.34043 | opp_overlap 2869674, overlap 2869671 TTTATCATTCCACAA TAACCACTCACCCACGGTCTGAAGGCTA ACT TCGCAGAAAGATCGTGGGTGAGTTGTTA CACTTAAAACAGAAT TERM 3522 2869674 - 2869720 + T 73 -8.6 -3.68222 | opp_overlap 2869671 2869668 ATTCCACAATAACCA CTCACCCACGGTCTGAAGGCTA ACT TCGCAGAAAGATCGTGGGTGAG TTGTTACACTTAAAA TERM 3523 2869795 - 2869785 - T 78 -5.4 -4.9725 | ACGTTCACACAAAAA CCTA TGC TAGG TAAGGATGAGCTAAA TERM 3524 2870082 - 2870059 - T 91 -6.7 -5.42975 | opp_overlap 2870059 CGACACAAATAAAAA GAGCCATGG AATAAA CCACAGCTC TTAAATCCATTGCTA Shewmr4_2407 2870335 - 2870126 - | cold-shock DNA-binding protein family protein rrmA 2871457 - 2870642 - | 23S rRNA methyltransferase A TERM 3525 2870703 - 2870714 + g 70 -4.4 -4.63218 | overlap 2870700 CTTAACCCACTTCGA GCAA ATGC TTGC TTTTGTTCCGCAGAA Shewmr4_2409 2872296 - 2871490 - | hypothetical protein TERM 3526 2873249 - 2873236 - g 74 -2.3 -5.1963 | opp_overlap 2873236 TCCAAGCAACAAAAA CGCCA TTAT TTGCG TTAACTTAGCGATGG sbcB 2872472 - 2873884 + | exonuclease I Shewmr4_2411 2874092 - 2874982 + | cytidine deaminase Shewmr4_2412 2875285 - 2875079 - | hypothetical protein Shewmr4_2413 2875613 - 2875266 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3527 2875505 - 2875495 - G 70 -3.2 -4.75472 | CCCACATCAATAAAA CAGC TGT ACTG CGGCCCGTAATCCTC TERM 3528 2875663 - 2875648 - R 100 -10.4 -5.72053 | TAATCAAACAAAAAA GGGAGC CAAT GCTCCC TCAAAGTATGCTGGC Shewmr4_2414 2876393 - 2875689 - | hypothetical protein TERM 3529 2876742 - 2876724 - H 70 -6 -4.36127 | CTCAATAACTCAAAA CATAAGGG ATG CGCTTATG AACTCTGCATTTAAT Shewmr4_2415 2876740 - 2877120 + | glyoxalase family protein TERM 3530 2877661 - 2877636 - g 74 -6.9 -4.3665 | GAAGTTAAAGAGAAA GATAATCAAGC TTTT GCCGGATTATC TCAGCTGCAATTTGA Shewmr4_2416 2877384 - 2880602 + | hypothetical protein TERM 3531 2880631 - 2880650 + F 74 -7.8 -4.0492 | opp_overlap 2880631 2880632, overlap 2880632 GCATAGATATAAAAA CGCCCAGT TCAC ACTGGGCA TTTATATCGCAATTC TERM 3532 2880650 - 2880631 - f 100 -10 -5.07275 | opp_overlap 2880631 2880632, overlap 2880632 GCATAGATATAAAAA CGCCCAGT TCAC ACTGGGCA TTTATATCGCAATTC TERM 3533 2880632 - 2880649 + F 83 -11.3 -3.0247 | opp_overlap 2880631 2880632, overlap 2880631 CATAGATATAAAAAC GCCCAGT TCAC ACTGGGC ATTTATATCGCAATT TERM 3534 2880649 - 2880632 - f 90 -11.3 -3.6328 | opp_overlap 2880632 2880631, overlap 2880631 CATAGATATAAAAAC GCCCAGT TCAC ACTGGGC ATTTATATCGCAATT Shewmr4_2417 2880829 - 2881185 + | glutaredoxin TERM 3535 2881216 - 2881187 - T 83 -10.7 -3.53343 | opp_overlap 2881193, overlap 2881192 2881193 AACGCTTTGCCTAAA TGAAATGCGCGCC CTAT GGCGCGCTTTTTA TTTACATCGCTTTAC TERM 3536 2881211 - 2881192 - T 89 -10.6 -4.05788 | opp_overlap 2881193, overlap 2881187 2881193 TTTGCCTAAATGAAA TGCGCGCC CTAT GGCGCGCT TTTTATTTACATCGC TERM 3537 2881193 - 2881210 + T 100 -14.1 -5.30616 | opp_overlap 2881193 2881192 2881187 TTGCCTAAATGAAAT GCGCGCC CTAT GGCGCGC TTTTTATTTACATCG TERM 3538 2881210 - 2881193 - T 100 -14.1 -3.03151 | opp_overlap 2881193, overlap 2881192 2881187 TTGCCTAAATGAAAT GCGCGCC CTAT GGCGCGC TTTTTATTTACATCG Shewmr4_2418 2881932 - 2881243 - | hypothetical protein TERM 3539 2881656 - 2881628 - G 74 -2.3 -5.15381 | gap 1 AACACACTGAAAAAA GCGCTCGGTAGC AGTAAG GCAACCGTG-GC TAAACGCCAACCAAA TERM 3540 2882012 - 2881987 - H 72 -7.7 -3.82603 | AAGCGGTAAAGATAA GCGATATAC GAGAGTGA GTATATCGC GAATAAAACCCATAA Shewmr4_2419 2882096 - 2882560 + | putative lipoprotein TERM 3541 2882604 - 2882626 + T 93 -12.1 -3.68619 | opp_overlap 2882604, overlap 2882607 TATAAAGATAAAAAA TAAGGGCGA AGTTA TCGCCCTTA TTTCAATGCATTAGA TERM 3542 2882626 - 2882604 - T 100 -12.1 -5.59879 | opp_overlap 2882604 2882607 TATAAAGATAAAAAA TAAGGGCGA AGTTA TCGCCCTTA TTTCAATGCATTAGA TERM 3543 2882607 - 2882623 + T 83 -9.4 -3.97331 | opp_overlap 2882604, overlap 2882604 AAAGATAAAAAATAA GGGCGA AGTTA TCGCCC TTATTTCAATGCATT Shewmr4_2420 2882873 - 2882694 - | hypothetical protein Shewmr4_2421 2883870 - 2882863 - | lipid-A-disaccharide synthase TERM 3544 2883846 - 2883808 - G 86 -8.2 -4.62051 | gap 1, overlap 2883809 AAATAGCACAGAAAA CGGCAGCAAGAGCCACC GCAATG GGTGGCCCTCG-TACCA AATTTTATTTACCAG TERM 3545 2883845 - 2883809 - G 72 -9.5 -3.35604 | gap 1, overlap 2883808 AATAGCACAGAAAAC GGCAGCAAGAGCCACC GCAATG GGTGGCCCTCG-TACC AAATTTTATTTACCA Shewmr4_2422 2885676 - 2883871 - | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA TERM 3546 2884681 - 2884671 - G 70 -3.2 -4.8143 | overlap 2884672 CTAACAATTCAAAAA CCGT GGT ACAG GCCGCAATACCGCGC TERM 3547 2884877 - 2884894 + g 79 -11.3 -3.55966 | opp_overlap 2884863 AGCGGCTGGCTAACC GCTTGCG CGAC CGCAAGC TTCATATTTTGATGA TERM 3548 2884903 - 2884925 + g 71 -7.8 -4.07568 | CGCAAGCTTCATATT TTGATGACGG TTT CTGTCATTAA TTTTGGCAAAGCGAG Shewmr4_2423 2888030 - 2885709 - | DNA internalization-related competence protein ComEC/Rec2 TERM 3549 2888029 - 2888018 - G 70 -3 -4.82855 | opp_overlap 2888026, overlap 2888026 CACTAAAGCCAAAAA TGAA TCCA TTCA TAGTGAATTAAGTTA Shewmr4_2424 2888063 - 2888572 + | hypothetical protein TERM 3550 2889166 - 2889186 + G 70 -3.1 -4.75372 | ATGATTTTTGGTTTT GTCTGCGCC GTC GTGGCAGGC TTTTTACTGACTGCT TERM 3551 2889215 - 2889227 + G 71 -10.5 -3.0806 | CTGTGCAAAACTGGA CCGGG CGC CCCGG TGTTAAGGGTTTGCC TERM 3552 2889385 - 2889402 + G 71 -6.3 -4.40003 | gap 1, opp_overlap 2889384, overlap 2889397 ATTTCGGTGATAGAG GTT-CGCC AGT GGCGCAAC TTTGTGTTTATCCCC Shewmr4_2425 2888965 - 2890137 + | NnrS family protein TERM 3553 2890232 - 2890242 + F 75 -5.4 -4.89233 | CGCGCCTCTTTTCCC TACC TAA GGTA TTTTTACTGTTACTA Shewmr4_2426 2890287 - 2890691 + | phosphate-starvation-inducible E TERM 3554 2890701 - 2890729 + F 81 -11.8 -2.52635 | opp_overlap 2890719 2890720, overlap 2890700 AATTAAGCTTTCTGC GCGCCATTGC CACACAAAC GCAATGGCGC ATTGCTCCTGCCACT Shewmr4_2427 2890843 - 2891145 + | type IV pilus assembly PilZ Shewmr4_2428 2891223 - 2891891 + | hypothetical protein Shewmr4_2429 2891878 - 2892222 + | RepA domain-containing protein TERM 3555 2892263 - 2892247 - T 70 -2.9 -5.055 | opp_overlap 2892258, overlap 2892253 2892254 2892257 TTAATTCTTAAAAAA CAAAAGG TAA CCCTTAG CAGTATTGCTGAGGT TERM 3556 2892258 - 2892277 + T 73 -8.6 -3.66803 | opp_overlap 2892247 2892257 2892254 2892253 AAAACAAAAGGTAAC CCTTAGCA GTAT TGCTGAGG TTTAAGATGTTCCCA TERM 3557 2892359 - 2892340 - T 76 -10 -3.3482 | opp_overlap 2892340 TAACGGGTTAATCAA TGGCCACA CTAA TGCGGCCA TTGATATAAACAAAC Shewmr4_2430 2892682 - 2892434 - | hypothetical protein Shewmr4_2431 2892811 - 2894493 + | signal transduction histidine kinase, LytS TERM 3558 2895047 - 2895037 - g 80 -2.4 -5.4505 | TGTTGGAAGAAAAAA CGCC GCT GGTG CGTTGCCATCGCCAA Shewmr4_2432 2894490 - 2895200 + | putative two-component response-regulatory protein YehT Shewmr4_2433 2895396 - 2896844 + | carbon starvation protein CstA TERM 3559 2896904 - 2896886 - f 100 -14.6 -3.30781 | opp_overlap 2896886, overlap 2896881 GCAATTCAAATGGAA CGGGCACT GAT AGTGCCCG TTTTTTTATCCATCG TERM 3560 2896886 - 2896904 + F 100 -14.6 -5.64274 | opp_overlap 2896886 2896881 GCAATTCAAATGGAA CGGGCACT GAT AGTGCCCG TTTTTTTATCCATCG TERM 3561 2897210 - 2897192 - g 71 -5.2 -4.50686 | overlap 2897193 TTAAAAACCAATAAA CTGCCGCT GCC AGCCGCAA AATCATCCAACGCCC Shewmr4_2434 2896982 - 2897344 + | hypothetical protein TERM 3562 2897652 - 2897690 + T 100 -15.5 -5.03747 | opp_overlap 2897652 2897655, overlap 2897655 AATAAGAACAGACAA CAATGCGCGGGATAATT CACTC GATTATCCCGCGCATTA TTTTTTAAGGGGTTT TERM 3563 2897690 - 2897652 - T 100 -17 -3.79345 | opp_overlap 2897652 2897655, overlap 2897655 AATAAGAACAGACAA CAATGCGCGGGATAAT TCACTCG ATTATCCCGCGCATTA TTTTTTAAGGGGTTT TERM 3564 2897655 - 2897687 + T 100 -17.2 -4.61482 | opp_overlap 2897655 2897652, overlap 2897652 AAGAACAGACAACAA TGCGCGGGATAATT CACTC GATTATCCCGCGCA TTATTTTTTAAGGGG TERM 3565 2897687 - 2897655 - T 100 -16.5 -3.99553 | opp_overlap 2897652 2897655, overlap 2897652 AAGAACAGACAACAA TGCGCGGGATAAT TCACTCG ATTATCCCGCGCA TTATTTTTTAAGGGG Shewmr4_2435 2898851 - 2897742 - | L-sorbosone dehydrogenase (SNDH) Shewmr4_2436 2899017 - 2899475 + | hypothetical protein Shewmr4_2437 2900419 - 2899541 - | hypothetical protein Shewmr4_2438 2901145 - 2900534 - | GTP cyclohydrolase II TERM 3566 2900896 - 2900915 + g 74 -7.8 -4.18762 | opp_overlap 2900896 2900895 2900894 2900898, overlap 2900899 AATATAAGATAAATC CACTGCCG GTTT CGGCAATG TTTTGCATCGCGGTT Shewmr4_2439 2901765 - 2901409 - | hypothetical protein nrdG 2902352 - 2901891 - | anaerobic ribonucleotide reductase-activating protein TERM 3567 2902427 - 2902401 - R 100 -10.2 -4.32046 | GGGCTAAAAATCAAA GCACAGTCGC CACCAGT GCAACTGTGC CAGTGTAACAAAACA Shewmr4_2441 2904575 - 2902458 - | anaerobic ribonucleoside triphosphate reductase TERM 3568 2903431 - 2903421 - G 79 -6.8 -4.63928 | opp_overlap 2903430, overlap 2903412 ATAGGAGCCTAAAAA GCTG CGA CAGC CCATAGGGGTTTTAA TERM 3569 2904676 - 2904656 - R 86 -11.9 -3.09193 | opp_overlap 2904654, overlap 2904660 ACTATATCTAGGCAA TTAAGCGGC ATC GCCGCCTAA AATTCCATGATCCAG TERM 3570 2904672 - 2904660 - R 78 -10.5 -3.3782 | opp_overlap 2904654, overlap 2904656 TATCTAGGCAATTAA GCGGC ATC GCCGC CTAAAATTCCATGAT TERM 3571 2904820 - 2904853 + r 100 -16.9 -4.09243 | opp_overlap 2904824, overlap 2904824 GGGAACCTATAACGG CAAAGGACCTTGGCT TAAA AGCCAAAGTCCTTTG TTTTAAAAAAATATA TERM 3572 2904824 - 2904849 + r 100 -11.9 -4.64861 | opp_overlap 2904824, overlap 2904820 ACCTATAACGGCAAA GGACCTTGGCT TAAA AGCCAAAGTCC TTTGTTTTAAAAAAA TERM 3573 2904849 - 2904824 - R 100 -14.1 -3.69621 | opp_overlap 2904820 2904824 ACCTATAACGGCAAA GGACCTTGGCT TAAA AGCCAAAGTCC TTTGTTTTAAAAAAA Shewmr4_2442 2905622 - 2904903 - | hypothetical protein Shewmr4_2443 2906655 - 2905708 - | patatin TERM 3574 2908312 - 2908291 - g 87 -7.2 -5.055 | CCAATGCGTAAAAAA CCTGCGGC GCCATT GCTGCAGG ATCATGACGACGAGC Shewmr4_2444 2906983 - 2908332 + | DEAD/DEAH box helicase domain-containing protein TERM 3575 2908675 - 2908656 - g 74 -8.6 -4.01411 | gap 1, opp_overlap 2908655 2908656 GAGCAAAAAGGCAAA CTGGCTGGC TCT GCCA-CCAG CTTTAAACTCGAAGC TERM 3576 2908827 - 2908813 - g 71 -11.4 -2.77192 | overlap 2908812 AACGCGTCCAACAAC CCGCCT TTG AGGCGG CCTACGCTCAGCAAA Shewmr4_2445 2908431 - 2908868 + | hypothetical protein TERM 3577 2908874 - 2908904 + F 100 -14.8 -3.53444 | overlap 2908875 TAAAGCTTAAGCGTG TGAGCTTAGCGCAA CTG TAGCGCTAAGCTCG TTTCCCCACAGCTAG TERM 3578 2908875 - 2908903 + F 100 -16.1 -2.71924 | overlap 2908874 AAAGCTTAAGCGTGT GAGCTTAGCGCAA CTG TAGCGCTAAGCTC GTTTCCCCACAGCTA Shewmr4_2446 2908925 - 2909434 + | hypothetical protein TERM 3579 2909949 - 2909935 - g 80 -3.4 -5.24129 | overlap 2909936 CGTCCTTATAAAAAA TCCCCC TGC GGAGGC TGCCCAGCTTTAAAA Shewmr4_2447 2909560 - 2910018 + | hypothetical protein TERM 3580 2910308 - 2910333 + T 100 -12.7 -5.1167 | gap 1, opp_overlap 2910308 CAGCGCAAATAAAAA CGCCGATGAGAT CAG ATC-CATCGGCG TTTTTATATTCGGTT TERM 3581 2910333 - 2910308 - T 100 -12.7 -5.28942 | gap 1, opp_overlap 2910308 CAGCGCAAATAAAAA CGCCGATGAGAT CAG ATC-CATCGGCG TTTTTATATTCGGTT Shewmr4_2448 2911664 - 2910369 - | peptidase M23B Shewmr4_2449 2914993 - 2911937 - | SMC domain-containing protein TERM 3582 2913132 - 2913147 + g 71 -5.4 -4.43815 | overlap 2913133 TGCGCCAAAGTCGAC TCTTGC TGCT GCAAGG TTTTGATCTGTTGCT Shewmr4_2450 2916192 - 2914990 - | exodeoxyribonuclease I subunit D Shewmr4_2451 2917283 - 2916474 - | hypothetical protein TERM 3583 2917075 - 2917065 - G 74 -2.4 -5.07107 | overlap 2917066 CAAACTCGCAAAAAA GCTG CCA CCGC AGGCCTGTAATTTGT TERM 3584 2918073 - 2918101 + G 88 -3.7 -5.60993 | opp_overlap 2918064, overlap 2918074 AGTCAAGCCGCAGCC AGTGGCATGGGCG CTG CGCTGATCCCACG TTTTTTTATCGAAGA Shewmr4_2452 2917332 - 2918294 + | LysR family transcriptional regulator TERM 3585 2918306 - 2918320 + T 89 -7.1 -5.06103 | opp_overlap 2918298 2918306 TTAGATAGCAAAAAA CCACC TGAGC GGTGG TTTTTTAACGCTTAT TERM 3586 2918320 - 2918306 - T 91 -7.1 -5.24989 | opp_overlap 2918306, overlap 2918298 TTAGATAGCAAAAAA CCACC TGAGC GGTGG TTTTTTAACGCTTAT Shewmr4_2453 2918734 - 2918348 - | hypothetical protein Shewmr4_2454 2918987 - 2918757 - | RNA-binding S4 domain-containing protein Shewmr4_2455 2919594 - 2919058 - | GCN5-related N-acetyltransferase TERM 3587 2919630 - 2919648 + r 80 -10.3 -3.48276 | opp_overlap 2919630 ACGAACTAAAAAAAA TGGCAGC CAAAC GCTGCCA TTGTCTCGGCAAGAA TERM 3588 2919648 - 2919630 - R 100 -10.3 -5.96521 | opp_overlap 2919630 ACGAACTAAAAAAAA TGGCAGC CAAAC GCTGCCA TTGTCTCGGCAAGAA Shewmr4_2456 2919947 - 2919669 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3589 2920110 - 2920073 - R 78 -9.2 -3.68853 | overlap 2920103 TTAAAAAGTCTTAAA CCGCGCCGTCATTAAT TTTGTT ATCGATAACGGCGCAG CAGAATTGACTCAGT Shewmr4_2457 2921956 - 2920127 - | hypothetical protein TERM 3590 2920963 - 2920940 - G 80 -4.6 -5.18561 | TAAAGAGGCAAAAAA GGCTTTTAAG TCAC CTTTAAAACC CACTTGCTCACGCAC Shewmr4_2458 2922037 - 2922546 + | diguanylate cyclase TERM 3591 2922573 - 2922548 - T 91 -10.5 -4.183 | opp_overlap 2922554, overlap 2922554 TCAAGCTGCAATAAA GAAAAAGCCCC TTAC GGGGCTTTTTA GATCTGCATTGCGAA TERM 3592 2922567 - 2922554 - T 100 -9.5 -5.47159 | opp_overlap 2922554, overlap 2922548 TGCAATAAAGAAAAA GCCCC TTAC GGGGC TTTTTAGATCTGCAT TERM 3593 2922554 - 2922567 + T 100 -9.5 -4.71061 | opp_overlap 2922548 2922554 TGCAATAAAGAAAAA GCCCC TTAC GGGGC TTTTTAGATCTGCAT Shewmr4_2459 2923845 - 2922598 - | TPR repeat-containing protein TERM 3594 2922890 - 2922862 - G 70 -10.4 -2.87132 | gap 1, opp_overlap 2922862 2922861, overlap 2922864 GCCTTGTTTCAGATA CAGCTTGCCATCA TTGT TGATGGC-AGCCG CTTTTCCGTAAAACT Shewmr4_2460 2924471 - 2923848 - | TonB family protein Shewmr4_2461 2924877 - 2924473 - | biopolymer transport protein ExbD/TolR TERM 3595 2924720 - 2924730 + g 73 -5.4 -4.70353 | overlap 2924717 GAAGGCTTAGAAGTC GCTT GTG AAGC TTTTGGTTTGTTATA TERM 3596 2924914 - 2924931 + r 71 -4.9 -4.67641 | GCGGCATGCTGTCTT TTAGCTT TTCT AAGCTGA TTTTCATTTTGGCAT Shewmr4_2462 2925418 - 2924891 - | MotA/TolQ/ExbB proton channel Shewmr4_2463 2926773 - 2925418 - | MotA/TolQ/ExbB proton channel Shewmr4_2464 2927555 - 2926773 - | hypothetical protein TERM 3597 2927596 - 2927586 - R 78 -4 -5.13741 | TGAAGTGAATAAAAA GTTA ACT TAAC AGCAACATCACTTAA TERM 3598 2927748 - 2927731 - R 82 -8.5 -4.40804 | opp_overlap 2927714 CATCATTTCACAAAA TGTTGAC CTGT GTCAACA TTCGAGACACGTAAA TERM 3599 2927907 - 2927895 - R 70 -2.7 -5.04597 | AGTTAGATAGAAAAA CTCAA GAC TTAAG AATGTGCAAATTGAT TERM 3600 2927973 - 2927987 + r 70 -2.8 -5.00884 | opp_overlap 2927964 2927973 TCAATAGCTATTAAT TAAGCG CTA CACTTA TTTTTTAGCACAGAT TERM 3601 2928187 - 2928225 + r 100 -12.7 -3.65902 | overlap 2928189 ACCACTAATTCCCTA GACCTCTTTTTAGTTAG ATAGG CTAGCTAAAAAGAGGTG TTTAAGTACCATAAA TERM 3602 2928189 - 2928223 + r 100 -15.3 -3.41073 | overlap 2928187 CACTAATTCCCTAGA CCTCTTTTTAGTTAG ATAGG CTAGCTAAAAAGAGG TGTTTAAGTACCATA Shewmr4_2465 2929549 - 2928335 - | IS4 family transposase TERM 3603 2930180 - 2930169 - R 70 -7.2 -3.77639 | TAATGGATAACAGAA GGCG GTAA CGCC AAATCCTTTAGAACG TERM 3604 2930231 - 2930213 - R 73 -8.2 -3.61062 | AACTCAATCAGATAA CACTCAAA AAA CTTGAGTG AGAGATATTACATAC TERM 3605 2930697 - 2930718 + r 100 -8.7 -4.64861 | opp_overlap 2930697 2930698, overlap 2930698 TATCAAAGTAAAGAA TCCACCTTC TGAA GAAGGTGGC TTTGTTTTAACCCCC TERM 3606 2930718 - 2930697 - R 83 -8.7 -4.17002 | opp_overlap 2930697 2930698, overlap 2930698 TATCAAAGTAAAGAA TCCACCTTC TGAA GAAGGTGGC TTTGTTTTAACCCCC TERM 3607 2930698 - 2930717 + r 89 -12.2 -3.38435 | opp_overlap 2930697 2930698, overlap 2930697 ATCAAAGTAAAGAAT CCACCTTC TGAA GAAGGTGG CTTTGTTTTAACCCC TERM 3608 2930717 - 2930698 - R 86 -12.2 -3.09117 | opp_overlap 2930698 2930697, overlap 2930697 ATCAAAGTAAAGAAT CCACCTTC TGAA GAAGGTGG CTTTGTTTTAACCCC Shewmr4_2466 2931181 - 2930747 - | transposase IS200-family protein TERM 3609 2931286 - 2931267 - R 91 -12.2 -3.49924 | opp_overlap 2931267 CTCAAATGATGATAA CCACCTAC TGAA GTAGGTGG TTTTGGGCTAAAAAT TERM 3610 2931267 - 2931286 + r 100 -12.2 -4.13945 | opp_overlap 2931267 CTCAAATGATGATAA CCACCTAC TGAA GTAGGTGG TTTTGGGCTAAAAAT TERM 3611 2931328 - 2931307 - R 100 -13.1 -5.61881 | opp_overlap 2931307 GGCTAAAAATAAAAA TACCAGCTC TAAA GAGCTGGTA TTTTTCAATTAAATC TERM 3612 2931307 - 2931328 + r 100 -13.1 -4.75174 | opp_overlap 2931307 GGCTAAAAATAAAAA TACCAGCTC TAAA GAGCTGGTA TTTTTCAATTAAATC Shewmr4_2467 2934072 - 2931349 - | TonB-dependent receptor TERM 3613 2934195 - 2934184 - R 71 -2.2 -5.18715 | ACAAAAACAATAAAA TCAC ATAG GCGA AAGCTTTGCAACAAA TERM 3614 2934299 - 2934278 - R 100 -14.5 -5.06414 | opp_overlap 2934278 GTTTTGTAACAAAAA CGCCAGTCA TTGC TGACTGGCG TTTTTTAGTACTGAG TERM 3615 2934278 - 2934299 + r 100 -14.5 -5.1861 | opp_overlap 2934278 GTTTTGTAACAAAAA CGCCAGTCA TTGC TGACTGGCG TTTTTTAGTACTGAG Shewmr4_2468 2935558 - 2934350 - | porin TERM 3616 2934494 - 2934472 - G 79 -9.2 -4.14627 | CTTCGACATAAAGAA CTGTGTTTGG ATC CCAAACAAAG TGTAAACCTACAACC Shewmr4_2469 2938211 - 2935779 - | DNA polymerase II TERM 3617 2938285 - 2938269 - H 75 -5.1 -4.87592 | overlap 2938270 GGACACAGAATAAAA TTGCCAT AAA ATGGCAG AAAAGTTTCTTAGGC TERM 3618 2938284 - 2938270 - H 71 -8.6 -3.5147 | overlap 2938269 GACACAGAATAAAAT TGCCAT AAA ATGGCA GAAAAGTTTCTTAGG TERM 3619 2938399 - 2938443 + G 73 -6.4 -4.46212 | gap 1, opp_overlap 2938399 2938397 2938401, overlap 2938401 CGCTATCTATAAAGA TATTGC-CGCCGCTTTGCCTA ATTT TAGGCCACGCCGCGAGCAAAA TTTTATGGTGGCAGA TERM 3620 2938628 - 2938591 - g 83 -5.5 -5.1356 | gap 1, opp_overlap 2938619, overlap 2938593 TGCGAGTAAGAAAAA GGT-CTGTATCGCCACAG CAA CCGTGGCGCTGCAGGAGC AGTTACTGCACAAAG TERM 3621 2940098 - 2940114 + G 70 -2.9 -4.84761 | overlap 2940099 GGTGAGCCGAGTATT TTGTTCG GCA CGGGCAG TTTTTCTGAAGGTCT dinG 2938352 - 2940424 + | ATP-dependent DNA helicase DinG TERM 3622 2940449 - 2940467 + G 71 -10.2 -3.14013 | overlap 2940448 TTGGAGTTGTTACTC GAGCCCAG TAA CTGGGCCC TGTTGGCTGTCATTG Shewmr4_2471 2940434 - 2941207 + | hypothetical protein Shewmr4_2472 2941198 - 2941866 + | primosomal replication protein N'', putative Shewmr4_2473 2941876 - 2942568 + | hypothetical protein Shewmr4_2474 2942574 - 2943476 + | histone deacetylase superfamily protein Shewmr4_2475 2943510 - 2943797 + | hypothetical protein TERM 3623 2944191 - 2944219 + T 81 -11.2 -3.30124 | gap 1, opp_overlap 2944191 2944198, overlap 2944198 TAGCCAAGTGAAAAT GATAAAAGCCTGC TAAT GCAGGCTTTT-TC TTATAAGGGCTCCAG TERM 3624 2944219 - 2944191 - T 79 -11.2 -3.16783 | gap 1, opp_overlap 2944191 2944198, overlap 2944198 TAGCCAAGTGAAAAT GATAAAAGCCTGC TAAT GCAGGCTTTT-TC TTATAAGGGCTCCAG TERM 3625 2944198 - 2944213 + T 100 -10.4 -5.18726 | opp_overlap 2944198 2944191, overlap 2944191 GTGAAAATGATAAAA GCCTGC TAAT GCAGGC TTTTTCTTATAAGGG TERM 3626 2944213 - 2944198 - T 100 -10.4 -4.67635 | opp_overlap 2944191 2944198, overlap 2944191 GTGAAAATGATAAAA GCCTGC TAAT GCAGGC TTTTTCTTATAAGGG Shewmr4_2476 2944627 - 2944262 - | helix-hairpin-helix repeat-containing competence protein ComEA TERM 3627 2944847 - 2944825 - R 82 -7.7 -4.49556 | opp_overlap 2944827, overlap 2944827 GTGCCATCAAACAAA TAGGATGCC ATAAG GGCATCCTT TCACTAAACCTAACA TERM 3628 2944845 - 2944827 - R 86 -10.3 -3.85603 | opp_overlap 2944827, overlap 2944825 GCCATCAAACAAATA GGATGCC ATAAG GGCATCC TTTCACTAAACCTAA TERM 3629 2944827 - 2944845 + r 82 -10.3 -3.65351 | opp_overlap 2944827 2944825 GCCATCAAACAAATA GGATGCC ATAAG GGCATCC TTTCACTAAACCTAA Shewmr4_2477 2946061 - 2944868 - | methionine gamma-lyase TERM 3630 2946331 - 2946305 - R 100 -13.9 -5.24531 | opp_overlap 2946300 ATCGGCGACAAAAAA TGCGCTAATGA GAGGG TCATTAGCGCA TTAGCATTTAGCCTA Shewmr4_2478 2947582 - 2946380 - | hypothetical protein TERM 3631 2946867 - 2946888 + g 100 -6.5 -5.41746 | gap 1, opp_overlap 2946857 AGCAACACGGCTGAC TCGGCCG-CG TAT CGACGGACGA TTTTTTTCGCCAGTT Shewmr4_2479 2949039 - 2947579 - | protein of unknown function DUF463, YcjX family protein TERM 3632 2948312 - 2948299 - G 86 -5.9 -5.09173 | TAACAGCGGAAAAAA CGCCA GCAG CGGCG CGCCTTCCCATTCCC TERM 3633 2949106 - 2949123 + r 78 -9.8 -3.55622 | opp_overlap 2949106 GAGATTAAGCAACAA GGGCGG ACATGG CCGCCC TTTAGAGGGATTACA TERM 3634 2949123 - 2949106 - R 84 -9.8 -3.84915 | opp_overlap 2949106 GAGATTAAGCAACAA GGGCGG ACATGG CCGCCC TTTAGAGGGATTACA Shewmr4_2480 2949520 - 2949134 - | phage shock protein C, PspC pspB 2949740 - 2949507 - | phage shock protein B Shewmr4_2482 2950448 - 2949765 - | phage shock protein A, PspA TERM 3635 2950021 - 2950049 + g 71 -6.7 -4.2349 | GATGAGGCGGTTTGA GTGCGCAAAATAA TGG TTTTTTGGCGCGC TTTTGCGTCTAACAG TERM 3636 2950632 - 2950622 - H 81 -4 -5.32699 | CGAAAGACTAAAAAA TATC GTG GATA ATAAATTTCAGCAAG Shewmr4_2483 2950626 - 2951714 + | Fis family transcriptional regulator TERM 3637 2952292 - 2952308 + G 70 -3 -4.8667 | gap 1, overlap 2952277 2952292 2952294 TCATCTTTCGTTTAG C-ACGCA AAGA TGCGTCG TTTTTATCAAATCTA TERM 3638 2952463 - 2952452 - g 70 -4.4 -4.63527 | GCATTACGCCAAAAA CGAA TATG TTCG CTATCGCCGCAATCC Shewmr4_2484 2951784 - 2953409 + | extracellular solute-binding protein TERM 3639 2953947 - 2953937 - g 70 -4.6 -4.5954 | opp_overlap 2953932, overlap 2953932 TTATATGAGATAAAA CCCG TTA CAGG ATTTATGTTGGTCGA Shewmr4_2485 2953409 - 2954440 + | binding-protein-dependent transport systems inner membrane component Shewmr4_2486 2954427 - 2955317 + | binding-protein-dependent transport systems inner membrane component Shewmr4_2487 2955321 - 2956328 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Shewmr4_2488 2956309 - 2957094 + | ABC transporter related Shewmr4_2489 2957140 - 2958402 + | trans-2-enoyl-CoA reductase TERM 3640 2958447 - 2958430 - f 100 -12.7 -4.21676 | opp_overlap 2958430 ATAATTTATGTAAAA CGCCACC CTTG GGTGGCG TTTTTATTTGCTGCA TERM 3641 2958430 - 2958447 + F 100 -12.7 -5.33405 | opp_overlap 2958430 ATAATTTATGTAAAA CGCCACC CTTG GGTGGCG TTTTTATTTGCTGCA Shewmr4_2490 2958518 - 2958730 + | molybdenum-pterin binding TERM 3642 2958781 - 2958810 + T 93 -12.3 -3.1585 | opp_overlap 2958786, overlap 2958786 TGTAACCAGACAAAC AAAAAGGCCAAGT GAAC ACTTGGCCTTTTC TATTAGATTCGCTAA TERM 3643 2958805 - 2958786 - T 100 -12.2 -5.42975 | opp_overlap 2958781 2958786 CCAGACAAACAAAAA GGCCAAGT GAAC ACTTGGCC TTTTCTATTAGATTC TERM 3644 2958786 - 2958805 + T 100 -12.2 -4.7033 | opp_overlap 2958786, overlap 2958781 CCAGACAAACAAAAA GGCCAAGT GAAC ACTTGGCC TTTTCTATTAGATTC TERM 3645 2958872 - 2958848 - T 91 -10.2 -4.07885 | opp_overlap 2958851, overlap 2958851 TATTGCTTCGTAAAA TAAGGGATAA GCAAG TTATCCCTTA TCGCAATTAACCTTC TERM 3646 2958869 - 2958851 - T 73 -7.5 -4.17048 | opp_overlap 2958851, overlap 2958848 TGCTTCGTAAAATAA GGGATAA GCAAG TTATCCC TTATCGCAATTAACC Shewmr4_2491 2960744 - 2958879 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3647 2960720 - 2960681 - G 76 -5 -4.90471 | gap 1, opp_overlap 2960715 2960719 ATGCAAAAGATAAAA TCACAAGTACGAGAATGCC TTT AGCAATCACGC-CTTGCGA ACCGTCGCGGATCTT TERM 3648 2960803 - 2960781 - R 100 -10.6 -5.62288 | opp_overlap 2960781 TTAACAAAATAAAAA GGCGCATC AATTTGA GATGCGCC TTTCTGTAATTTATG TERM 3649 2960781 - 2960803 + r 91 -10.6 -4.19123 | opp_overlap 2960781 TTAACAAAATAAAAA GGCGCATC AATTTGA GATGCGCC TTTCTGTAATTTATG TERM 3650 2960912 - 2960929 + r 78 -9.9 -3.50853 | opp_overlap 2960912 TTCAATTCGTAAAAA GCACTGT TTGA ACAGTGC TTATCATTACGAACG TERM 3651 2960929 - 2960912 - R 100 -9.9 -4.62471 | opp_overlap 2960912 TTCAATTCGTAAAAA GCACTGT TTGA ACAGTGC TTATCATTACGAACG Shewmr4_2492 2961243 - 2960971 - | histone family protein DNA-binding protein TERM 3652 2960997 - 2961017 + g 72 -3.9 -4.77036 | overlap 2960999 CGTCTTTCAGAGCTT TACCAGCTT TGA ATGCTGGAA TTTTTGCTGCTGCGA TERM 3653 2961416 - 2961385 - R 100 -17.4 -3.65425 | TGGATACAGCTCAAA GCCAGTTGCGCCAA GGGC TTGGAGCAACTGGC TCTCCACAGACCTAG Shewmr4_2493 2963860 - 2961503 - | Lon-A peptidase TERM 3654 2963945 - 2963961 + r 70 -7.9 -3.69437 | opp_overlap 2963945, overlap 2963941 GTCAAAATAAAAAAA GGAGCCC GAT GGACTCC TTGATTTTCAGATTA TERM 3655 2963961 - 2963945 - R 100 -10.1 -6.09196 | opp_overlap 2963945 2963941 GTCAAAATAAAAAAA GGAGCCC GAT GGACTCC TTGATTTTCAGATTA clpX 2965273 - 2963993 - | ATP-dependent protease ATP-binding subunit clpP 2965981 - 2965373 - | ATP-dependent Clp protease proteolytic subunit TERM 3656 2965673 - 2965655 - G 80 -4.4 -5.06816 | overlap 2965656 ACCGGCTAATAAAAA CGCGCCCA TGC TGGCCGCT TGACCAATACACACA TERM 3657 2966004 - 2966033 + r 100 -15.1 -3.35679 | opp_overlap 2966004 2966030 TTCCCTAAATAAAAA TGGCTCGCATGAG GAGC CTCATACGAGCCA TTATAAATGGCGAAC TERM 3658 2966033 - 2966004 - R 100 -17.3 -5.27335 | opp_overlap 2966004, overlap 2966030 TTCCCTAAATAAAAA TGGCTCGCATGAG GAGC CTCATACGAGCCA TTATAAATGGCGAAC tig 2967375 - 2966071 - | trigger factor TERM 3659 2966169 - 2966188 + g 74 -7.8 -4.19258 | opp_overlap 2966159, overlap 2966172 CAACAGCTTGCTCTT CAAGCGCA ACGT TGCGCATG TTTTGCATCAGCTCT TERM 3660 2967605 - 2967591 - H 100 -11.4 -5.626 | opp_overlap 2967591 TAGGGTATAAAAAAA GCGACC AGA GGTCGC TTTTTTTATTTTGTA TERM 3661 2967591 - 2967605 + H 100 -11.4 -6.14618 | opp_overlap 2967591 TAGGGTATAAAAAAA GCGACC AGA GGTCGC TTTTTTTATTTTGTA TERM 3662 2968109 - 2968124 + H 100 -10.4 -4.94992 | opp_overlap 2968108 TAGATGCTGAATTAT CAGGCG AATA CGCCTG TTTTTATCCATTTCG Shewmr4_2497 2968253 - 2969107 + | methenyltetrahydrofolate cyclohydrolase TERM 3663 2969281 - 2969252 - T 86 -11.7 -3.26319 | gap 1, opp_overlap 2969253 2969260, overlap 2969260 AACGCGTGAGACCAA TAAAAAAACCTGCC ATT GGCAGGTTTTTT-A TTATCGATACGAATC TERM 3664 2969253 - 2969281 + T 100 -13.3 -3.35996 | opp_overlap 2969252 2969260, overlap 2969260 ACGCGTGAGACCAAT AAAAAAACCTGCC ATT GGCAGGTTTTTTA TTATCGATACGAATC TERM 3665 2969260 - 2969274 + T 100 -11.4 -5.56673 | opp_overlap 2969260 2969252, overlap 2969253 AGACCAATAAAAAAA CCTGCC ATT GGCAGG TTTTTTATTATCGAT TERM 3666 2969274 - 2969260 - T 100 -11.4 -5.85737 | opp_overlap 2969253 2969260, overlap 2969252 AGACCAATAAAAAAA CCTGCC ATT GGCAGG TTTTTTATTATCGAT cysS 2970716 - 2969331 - | cysteinyl-tRNA synthetase TERM 3667 2971086 - 2971072 - g 70 -8.6 -3.762 | opp_overlap 2971066, overlap 2971064 AAACGAAGCCAACAA CGGTTT ATC AAACCG TACTGGTACTATCGC Shewmr4_2499 2970851 - 2971342 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type Shewmr4_2500 2971352 - 2972071 + | UDP-2,3-diacylglucosamine hydrolase Shewmr4_2501 2972929 - 2972159 - | tRNA--hydroxylase TERM 3668 2972399 - 2972384 - G 77 -10.4 -3.57561 | overlap 2972368 CGCTAATTTGGCAAA GCGCTC ACAG GAGCGC GCCTCAATGTACGCA TERM 3669 2973290 - 2973255 - g 76 -8.3 -4.22214 | overlap 2973281 ACTCATCCAAAACAA GAGTGGCACGCGATT GAGAAG AATCACGAGGCACTC AAAAGTAGCTTAAGT Shewmr4_2502 2973210 - 2973806 + | hypothetical protein TERM 3670 2973941 - 2973904 - T 100 -10.7 -4.66264 | opp_overlap 2973909, overlap 2973895 2973909 GAAAAGTTGTAAAAA CAAAAGGCCCTTAGCTT GAAA ACACTAAGGGCCTTTTT ATTCTTTACTGCAGT TERM 3671 2973909 - 2973936 + T 100 -8.5 -5.39905 | opp_overlap 2973909 2973904 GTTGTAAAAACAAAA GGCCCTTAG CTTGAAAACA CTAAGGGCC TTTTTATTCTTTACT TERM 3672 2973936 - 2973909 - T 100 -10.6 -5.26119 | opp_overlap 2973909, overlap 2973904 GTTGTAAAAACAAAA GGCCCTTAGCTT GAAA ACACTAAGGGCC TTTTTATTCTTTACT Shewmr4_2503 2975669 - 2973999 - | glutaminyl-tRNA synthetase TERM 3673 2974295 - 2974314 + g 71 -5 -4.57073 | gap 1 GGATTACGCCTTTCA CCTTG-CGA CCA TCGGCAGGG TTTTTACCCAAGGTA TERM 3674 2974894 - 2974881 - G 76 -6.7 -4.47551 | overlap 2974872 2974883 ATTTAAGCGAGAAAA CTCGT ACTG ACGAG TACGGTTCGGCGCTT TERM 3675 2975814 - 2975788 - R 100 -10.3 -4.29302 | opp_overlap 2975787 2975793, overlap 2975793 TGGATAGTAAAACAA TAAAAGCAGCC ATGAA AGCTGCTTTTA CCTTTGTCATCACTA TERM 3676 2975809 - 2975793 - R 85 -5.8 -5.10656 | opp_overlap 2975793 2975787, overlap 2975788 AGTAAAACAATAAAA GCAGCC ATGAA AGCTGC TTTTACCTTTGTCAT Shewmr4_2504 2978147 - 2975853 - | ferrous iron transport protein B Shewmr4_2505 2978379 - 2978140 - | FeoA family protein TERM 3677 2978854 - 2978837 - g 76 -8.5 -4.24002 | opp_overlap 2978837 GGTTAAAGTTCAAAA GCATAAC TCAG GTTATGC TTGTTGTGATGTTAT TERM 3678 2978837 - 2978854 + G 72 -8.5 -3.89893 | opp_overlap 2978837 GGTTAAAGTTCAAAA GCATAAC TCAG GTTATGC TTGTTGTGATGTTAT Shewmr4_2506 2978806 - 2979771 + | cytochrome C family protein TERM 3679 2980798 - 2980767 - g 74 -6.5 -4.30576 | opp_overlap 2980767, overlap 2980768 CGGGTATCAGCAAAA TGTCGCAGGATGA GGCTTT TCTTCCCGCGACC ATTAATGGCCCCTCC TERM 3680 2980954 - 2980944 - g 76 -3.2 -5.11836 | ACAGGGAAAACAAAA CAGC TCA ACTG GATTTCCCACAGGTC Shewmr4_2507 2979785 - 2981923 + | outer membrane protein, putative Shewmr4_2508 2981959 - 2983878 + | decaheme cytochrome c MtrF Shewmr4_2509 2984125 - 2986320 + | decaheme cytochrome c TERM 3681 2986361 - 2986381 + F 100 -11.2 -6.07374 | opp_overlap 2986361 GAGACAGGACAAAAA GAGAGAGG TAACC CCTCTCTC TTTTTTATTTTTTAT TERM 3682 2986381 - 2986361 - f 100 -11.2 -4.96762 | opp_overlap 2986361 GAGACAGGACAAAAA GAGAGAGG TAACC CCTCTCTC TTTTTTATTTTTTAT Shewmr4_2510 2986653 - 2988620 + | decaheme cytochrome c TERM 3683 2988633 - 2988650 + F 100 -12.7 -4.3351 | opp_overlap 2988633, overlap 2988625 TAATTTGCCCAAGCA GGGGGAG TTCG CTCCCCC TTTCTTGAATTTTGT TERM 3684 2988650 - 2988633 - f 88 -12.7 -2.71681 | opp_overlap 2988625 2988633 TAATTTGCCCAAGCA GGGGGAG TTCG CTCCCCC TTTCTTGAATTTTGT Shewmr4_2511 2988689 - 2989678 + | cytochrome C family protein TERM 3685 2989940 - 2989921 - g 71 -5 -4.56597 | CTTTGGTTCTAAAAA CGAAGTTG CGGG CAAGTTCG ATGCAGACCTTGCTT Shewmr4_2512 2989691 - 2991778 + | outer membrane protein precursor MtrB TERM 3686 2991821 - 2991797 - f 91 -12.9 -2.61264 | opp_overlap 2991802, overlap 2991802 GCGTTTATTGATAAT CAAAAGCCCGC TCT GCGGGCTTTTT TATTACCAACTAACA TERM 3687 2991802 - 2991816 + F 100 -12.8 -5.4505 | opp_overlap 2991797 2991802 TATTGATAATCAAAA GCCCGC TCT GCGGGC TTTTTTATTACCAAC TERM 3688 2991816 - 2991802 - f 100 -12.8 -4.50058 | opp_overlap 2991802, overlap 2991797 TATTGATAATCAAAA GCCCGC TCT GCGGGC TTTTTTATTACCAAC Shewmr4_2513 2991998 - 2992621 + | hypothetical protein TERM 3689 2992669 - 2992659 - g 70 -8.2 -3.66999 | opp_overlap 2992662, overlap 2992660 AGCTATCGAGCCAAA CGGC TCA GCCG AGCTCAGTATATTGC Shewmr4_2514 2992621 - 2993343 + | phage SPO1 DNA polymerase domain-containing protein TERM 3690 2993368 - 2993382 + T 71 -8.5 -3.54424 | opp_overlap 2993368 AAATCCCAATAAAAA GCCCC ATTAA GGGGC TTTCGGAAACTAGAA TERM 3691 2993382 - 2993368 - T 100 -8.5 -5.11112 | opp_overlap 2993368 AAATCCCAATAAAAA GCCCC ATTAA GGGGC TTTCGGAAACTAGAA Shewmr4_2515 2994974 - 2993472 - | vibriolysin Shewmr4_2516 2995206 - 2996438 + | CdaR family transcriptional regulator Shewmr4_2517 2996676 - 2997674 + | catalase domain-containing protein TERM 3692 2997732 - 2997769 + F 100 -20.1 -2.59039 | opp_overlap 2997732 2997761 2997764, overlap 2997732 TTACATTCGAATTCA CGGCCCTTATTTTGTGC ACAC GCACAAAATAAGGGCCA GTTCTGCCCGTAATT TERM 3693 2997732 - 2997770 + F 100 -19.9 -3.32268 | gap 1, opp_overlap 2997732 2997761 2997764, overlap 2997732 TTACATTCGAATTCA C-GGCCCTTATTTTGTGC ACAC GCACAAAATAAGGGCCAG TTCTGCCCGTAATTC TERM 3694 2997769 - 2997732 - f 100 -22.3 -2.54523 | opp_overlap 2997732 2997732, overlap 2997761 2997764 TTACATTCGAATTCA CGGCCCTTATTTTGTGC ACAC GCACAAAATAAGGGCCA GTTCTGCCCGTAATT TERM 3695 2997880 - 2997843 - f 73 -8.5 -3.60296 | TAGGCTGACCTTAAA GCAGCTTTTATTTGGAC TTGG GATCAAATAAAGGCTGC GCCCTACAAAAACAG Shewmr4_2518 2997941 - 2999299 + | gluconate transporter TERM 3696 2999288 - 2999306 + F 93 -8.8 -4.51097 | opp_overlap 2999283, overlap 2999276 TATGTACTAAGCTTA GTGCTGCT CTA AGCCGCAC TTTTCTCATCCTTGG Shewmr4_2519 2999358 - 3000503 + | glycerate kinase TERM 3697 3000552 - 3000577 + F 100 -11.9 -4.38927 | opp_overlap 3000549 3000547 3000552 3000556, overlap 3000556 CCTAACAACACACAC CCAAGGCGCTA TTCA TAGCGCCTTTG TTTATTCTATGACCC TERM 3698 3000577 - 3000552 - f 81 -11.9 -2.51223 | opp_overlap 3000552 3000556, overlap 3000549 3000547 3000556 CCTAACAACACACAC CCAAGGCGCTA TTCA TAGCGCCTTTG TTTATTCTATGACCC TERM 3699 3000556 - 3000573 + F 100 -11.3 -4.76087 | opp_overlap 3000552 3000549 3000547 3000556, overlap 3000552 ACAACACACACCCAA GGCGCTA TTCA TAGCGCC TTTGTTTATTCTATG TERM 3700 3000573 - 3000556 - f 84 -11.3 -3.19657 | opp_overlap 3000556 3000552, overlap 3000552 3000549 3000547 ACAACACACACCCAA GGCGCTA TTCA TAGCGCC TTTGTTTATTCTATG TERM 3701 3002030 - 3002000 - g 79 -6.8 -4.59511 | overlap 3001989 AACAGCCTTGAAAAA GCGCGTTATTTTGC CGA GCAAATCGACGCAC ACCCGGACTTTGAAC Shewmr4_2520 3000758 - 3002407 + | pyridoxal-dependent decarboxylase TERM 3702 3002458 - 3002491 + T 100 -16.9 -3.54424 | opp_overlap 3002464, overlap 3002464 ATACAGAGTGTTAAT CAAAAACAGCCGCAA ATAT TTGCGGCTGTTTTGG TTTGCAGAGCTGGGA TERM 3703 3002464 - 3002485 + T 100 -14.5 -4.54727 | opp_overlap 3002464, overlap 3002458 AGTGTTAATCAAAAA CAGCCGCAA ATAT TTGCGGCTG TTTTGGTTTGCAGAG TERM 3704 3002485 - 3002464 - T 100 -14.5 -4.86621 | opp_overlap 3002464 3002458 AGTGTTAATCAAAAA CAGCCGCAA ATAT TTGCGGCTG TTTTGGTTTGCAGAG Shewmr4_2521 3005479 - 3002870 - | hypothetical protein Shewmr4_2522 3006467 - 3005493 - | ATPase central domain-containing protein Shewmr4_2523 3006838 - 3007302 + | hypothetical protein TERM 3705 3007623 - 3007633 + G 72 -8.2 -3.87641 | TTGATAGGGGCAGTT GGCG TAG CGCC TTTATCCGCAATATT Shewmr4_2524 3007382 - 3007837 + | hypothetical protein Shewmr4_2525 3007937 - 3008317 + | hypothetical protein Shewmr4_2526 3008528 - 3009031 + | streptogramin A acetyl transferase Shewmr4_2527 3009201 - 3010037 + | AraC family transcriptional regulator TERM 3706 3010437 - 3010450 + G 76 -3.1 -5.06816 | gap 1, overlap 3010439 TACCACTCAAATGGC GCCTCA CTC TG-GGC TTTTTATTGACCGAT TERM 3707 3010522 - 3010539 + G 82 -7.7 -4.68424 | overlap 3010515 CGATCCTTGGTACGC CTTGGGC GGCG GCCTAAG TTTTTACCTCGGTTG Shewmr4_2528 3010103 - 3010870 + | AzlC family protein TERM 3708 3010949 - 3010971 + G 70 -2.7 -4.8143 | gap 1, opp_overlap 3010939, overlap 3010949 CAAAACTGCCGCTAA GG-CTGAGTA AAAA TACCCAGACC TTTTTGAGTTATTCG Shewmr4_2529 3010867 - 3011169 + | branched-chain amino acid transport Shewmr4_2530 3012517 - 3011159 - | major facilitator transporter TERM 3709 3012646 - 3012633 - R 70 -8.1 -3.69333 | opp_overlap 3012632 GATAACTTACGCAAA CCGAG CCTA CTCGG CTTGATACAGCAACT Shewmr4_2531 3013808 - 3012639 - | N-acetylglucosamine 6-phosphate deacetylase Shewmr4_2532 3014724 - 3013798 - | N-acetylglucosamine kinase Shewmr4_2533 3015905 - 3014745 - | sugar isomerase (SIS) Shewmr4_2534 3017199 - 3015913 - | tagatose-bisphosphate aldolase noncatalytic subunit TERM 3710 3016277 - 3016263 - G 71 -11.4 -2.71791 | opp_overlap 3016275 3016276, overlap 3016262 AGCTTTGGCGTAAAT CCGAGC ATT GCTCGG GCTGGCACAGCACAT Shewmr4_2535 3018575 - 3017205 - | twin-arginine translocation pathway signal Shewmr4_2536 3019373 - 3018588 - | DeoR family transcriptional regulator TERM 3711 3018789 - 3018800 + g 76 -5.8 -4.60041 | ACACATCATTCGGTT GAGG CTGG CCTC TTTTTCAAAGTGAGT TERM 3712 3019101 - 3019113 + g 71 -10.5 -3.09987 | opp_overlap 3019101 GCCGTTTTGCACCAA GGCCG CCG CGGCC TTACCTAACTCTTGC TERM 3713 3019113 - 3019101 - G 71 -10.5 -3.14132 | opp_overlap 3019101 GCCGTTTTGCACCAA GGCCG CCG CGGCC TTACCTAACTCTTGC TERM 3714 3019760 - 3019728 - g 79 -12 -3.27476 | gap 1 ACTCTTAACCACCAA GCCTGCCGCGATTGC CCTA GCCATCGCAGC-GGC TCTGACAGCAACTCA Shewmr4_2537 3019708 - 3022563 + | TonB-dependent receptor TERM 3715 3022589 - 3022613 + T 100 -11.6 -4.66833 | opp_overlap 3022593, overlap 3022593 TAAAGTTAATCACCA TAAAGCCACT CTATA AGTGGCTTTA TTTTTCGGCTTCACG TERM 3716 3022593 - 3022609 + T 91 -8 -4.88293 | opp_overlap 3022593, overlap 3022589 GTTAATCACCATAAA GCCACT CTATA AGTGGC TTTATTTTTCGGCTT TERM 3717 3022609 - 3022593 - T 80 -8.7 -4.02022 | opp_overlap 3022593 3022589 GTTAATCACCATAAA GCCACTC TAT AAGTGGC TTTATTTTTCGGCTT Shewmr4_2538 3023309 - 3022611 - | helix-turn-helix, type 11 domain-containing protein Shewmr4_2539 3023869 - 3023420 - | transcription activator, effector binding TERM 3718 3024025 - 3024004 - R 95 -12.3 -3.25304 | AAACATCAGTACCAA GAGCCGTGC CAAG GCACGACTC TGCAGCGGTTACATT Shewmr4_2540 3024422 - 3024039 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3719 3024539 - 3024506 - R 100 -12.6 -5.01823 | opp_overlap 3024509, overlap 3024509 ACAACAAGAATAAAA CAAGGCTACTGACA ACATCA TGTCAGTAGCCTTT GAGTGAAGCTGATTT TERM 3720 3024536 - 3024509 - R 100 -14.3 -4.55653 | opp_overlap 3024509, overlap 3024506 ACAAGAATAAAACAA GGCTACTGACA ACATCA TGTCAGTAGCC TTTGAGTGAAGCTGA TERM 3721 3024509 - 3024536 + r 100 -14.3 -3.65351 | opp_overlap 3024509 3024506 ACAAGAATAAAACAA GGCTACTGACA ACATCA TGTCAGTAGCC TTTGAGTGAAGCTGA TERM 3722 3024563 - 3024575 + r 80 -9.1 -3.96483 | CTGATTTTATTGAGT GCGCT AAA AGCGC TTATTTAGGTAGGCT Shewmr4_2541 3026297 - 3024576 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 3723 3025195 - 3025213 + g 74 -7.4 -4.21194 | overlap 3025196 GTGGTATAACTTTCA ACGCCAAA GCC TTTGGCGA TTTTAGATAATAGAC TERM 3724 3025196 - 3025212 + g 71 -10.9 -3.12395 | overlap 3025195 TGGTATAACTTTCAA CGCCAAA GCC TTTGGCG ATTTTAGATAATAGA TERM 3725 3025255 - 3025241 - G 74 -10 -3.54951 | opp_overlap 3025226 3025225 3025253 GACTGGAGGACACAA TGGTGG TGC CCACCA GACGTTGGTCTTTCG Shewmr4_2542 3026865 - 3026560 - | hypothetical protein TERM 3726 3027263 - 3027291 + r 100 -16.1 -2.87881 | opp_overlap 3027263 3027268, overlap 3027268 AAGGGATAACCAAAG GAAAACTGGCGCC CTA GGCGCCAGTTTTA TCTATAAAAACATTA TERM 3727 3027291 - 3027263 - R 100 -16.1 -3.00441 | opp_overlap 3027263 3027268, overlap 3027268 AAGGGATAACCAAAG GAAAACTGGCGCC CTA GGCGCCAGTTTTA TCTATAAAAACATTA TERM 3728 3027286 - 3027268 - R 100 -16 -4.62957 | opp_overlap 3027263 3027268, overlap 3027263 ATAACCAAAGGAAAA CTGGCGCC CTA GGCGCCAG TTTTATCTATAAAAA TERM 3729 3027268 - 3027286 + r 100 -16 -4.60797 | opp_overlap 3027268 3027263, overlap 3027263 ATAACCAAAGGAAAA CTGGCGCC CTA GGCGCCAG TTTTATCTATAAAAA Shewmr4_2543 3028287 - 3027304 - | integral membrane protein TerC TERM 3730 3028325 - 3028312 - R 74 -8.1 -4.04549 | overlap 3028310 TAAAATCTAAAAATA CCGAG TTTT CTCGG CCTCATCGCCACGTT TERM 3731 3028626 - 3028608 - R 86 -6.6 -4.98436 | opp_overlap 3028608, overlap 3028612 CTAAGACGATAAAAA GCGAGCTG TTT CAGCGCAC TGTGTAACACTTGAG Shewmr4_2544 3028997 - 3028758 - | hypothetical protein Shewmr4_2545 3030201 - 3029074 - | 3-beta hydroxysteroid dehydrogenase/isomerase TERM 3732 3029532 - 3029513 - G 73 -11.4 -2.94322 | overlap 3029510 AGTTTACCCAAACGA CCACGGGC GAGC ACCCGTGG CACCAAATGCGGATC TERM 3733 3029614 - 3029639 + g 74 -6.9 -4.37886 | opp_overlap 3029599, overlap 3029615 CGCCGACGTTGTTGT CGATGCTTGAT TAGC ATCGAGCATCA TTTTCTCGGCGATGG TERM 3734 3029615 - 3029638 + g 73 -10.4 -3.2241 | overlap 3029614 GCCGACGTTGTTGTC GATGCTTGAT TAGC ATCGAGCATC ATTTTCTCGGCGATG Shewmr4_2546 3032186 - 3030345 - | peptide synthase TERM 3735 3031972 - 3031984 + g 79 -7.7 -4.55295 | GCACTGAGCGCGAAG GCGAT GGC ATCGC TTTGTTTATCGAGGC Shewmr4_2547 3033205 - 3032186 - | alpha/beta hydrolase fold TERM 3736 3033288 - 3033250 - R 100 -9.7 -5.4111 | gap 1, overlap 3033240 AATAAGCATAAAAAA TGCCCTAGCAAAC-CTTG CTAT CAAGCGTCGGCTAAGGCA GATAACAATCTTGGA Shewmr4_2548 3034356 - 3033307 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 3737 3034386 - 3034402 + r 89 -7.3 -5.03201 | opp_overlap 3034381 3034386, overlap 3034381 CGCTCACTAAGATCA CTGATCT TTT AGGTCAG TTTTTAGTTGTTATT Shewmr4_2549 3035978 - 3034611 - | hypothetical protein Shewmr4_2550 3036266 - 3036499 + | hypothetical protein TERM 3738 3036487 - 3036517 + T 100 -9.8 -4.59117 | opp_overlap 3036494, overlap 3036493 3036494 CGAGGCGCGACTTGC GAAAAAAGCCTGAA AAT TTCAGGCCTTTTAC TTTTATCGTTACTTT TERM 3739 3036493 - 3036511 + T 81 -7.4 -4.74012 | opp_overlap 3036494, overlap 3036487 3036494 GCGACTTGCGAAAAA AGCCTGAA AAT TTCAGGCC TTTTACTTTTATCGT TERM 3740 3036510 - 3036494 - T 100 -10.9 -5.02074 | opp_overlap 3036494 3036493 3036487 CGACTTGCGAAAAAA GCCTGAA AAT TTCAGGC CTTTTACTTTTATCG TERM 3741 3036494 - 3036510 + T 83 -10.9 -3.4278 | opp_overlap 3036494, overlap 3036493 3036487 CGACTTGCGAAAAAA GCCTGAA AAT TTCAGGC CTTTTACTTTTATCG Shewmr4_2551 3036888 - 3036526 - | hypothetical protein TERM 3742 3036955 - 3036919 - R 100 -8.9 -5.03715 | gap 1, opp_overlap 3036917 3036919 3036920, overlap 3036920 ATTACCCCTAAAAAA GTGCCCCAAGG-ATAA TCCGAG TTATTCCTTGGGGCAA TATTTCTGAACGCAA TERM 3743 3036919 - 3036955 + r 76 -9.6 -3.51934 | gap 1, opp_overlap 3036919 3036920, overlap 3036917 3036920 ATTACCCCTAAAAAA GTGCCCCAAGG-ATAAT CCGA GTTATTCCTTGGGGCAA TATTTCTGAACGCAA TERM 3744 3036954 - 3036920 - R 100 -12.4 -3.61506 | gap 1, opp_overlap 3036919 3036917 3036920, overlap 3036919 TTACCCCTAAAAAAG TGCCCCAAGG-ATAA TCCGAG TTATTCCTTGGGGCA ATATTTCTGAACGCA TERM 3745 3036920 - 3036954 + r 91 -13.1 -2.70946 | gap 1, opp_overlap 3036920 3036919, overlap 3036919 3036917 TTACCCCTAAAAAAG TGCCCCAAGG-ATAAT CCGA GTTATTCCTTGGGGCA ATATTTCTGAACGCA Shewmr4_2552 3038952 - 3036976 - | choline/carnitine/betaine transporter TERM 3746 3037751 - 3037725 - G 73 -5.9 -4.51743 | gap 1, opp_overlap 3037745, overlap 3037745 TGACCACTAAACAAA TCCCA-ATCCCC GACA GGAGATGCGGGA ACGGCATATGTTCAA TERM 3747 3039582 - 3039562 - R 100 -14.1 -5.33785 | AATCAGCATAAAAAA TGGCGACTT GTT AAGTCGCCA CAAAATTGTATCACA TERM 3748 3039648 - 3039624 - R 90 -7.2 -5.09225 | opp_overlap 3039624 ATTTGATGCAAAAAA CCAAAACCAA CTTAT TCGGCTTTGG TTTTTACCGTTGCCG Shewmr4_2553 3040240 - 3039635 - | hypothetical protein TERM 3749 3040292 - 3040274 - H 82 -2.4 -5.63504 | overlap 3040275 3040285 AATGGGATAAAAAAA GGCATAAA TTA TTTACGCT AAAAAGCGCGTTAAA Shewmr4_2554 3040396 - 3040791 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 3750 3040986 - 3040996 + G 73 -3.2 -4.9725 | overlap 3040978 3040980 GTTGTAGCCGCGTGG TGCG CCG TGCA TTTTTATGTGGCGAT Shewmr4_2555 3040916 - 3041893 + | hypothetical protein Shewmr4_2556 3043715 - 3042633 - | hypothetical protein TERM 3751 3044001 - 3043980 - R 100 -11.6 -5.90231 | opp_overlap 3043980 AGAAACACAAAAAAA CGCTCTGC GGTTAG GCAGAGCG TTTGTGGATAAAGCC TERM 3752 3043980 - 3044001 + r 100 -11.6 -3.91897 | opp_overlap 3043980 AGAAACACAAAAAAA CGCTCTGC GGTTAG GCAGAGCG TTTGTGGATAAAGCC Shewmr4_2557 3044743 - 3044033 - | transcriptional regulator PhoU Shewmr4_2558 3045689 - 3044871 - | phosphate ABC transporter, ATPase subunit TERM 3753 3045364 - 3045394 + g 95 -5.3 -5.67063 | opp_overlap 3045364, overlap 3045365 3045368 CGCTGGAACACCATA CCTACGTTGCGGC GCAGG GCGGCAACGTCGA TTTTTTTGTCATAAA TERM 3754 3045365 - 3045393 + g 77 -8.8 -3.99153 | opp_overlap 3045364, overlap 3045364 3045368 GCTGGAACACCATAC CTACGTTGCGGC GCAGG GCGGCAACGTCG ATTTTTTTGTCATAA Shewmr4_2559 3047381 - 3045723 - | phosphate ABC transporter, inner membrane subunit PstA TERM 3755 3046324 - 3046376 + g 83 -5.6 -5.09173 | gap 2, opp_overlap 3046323 CCGTACACAATCGAT GGCACACCCGCTAAGTTGATCACCGC AAT GCG--GATCATCTTAGTGATTGGGCC TTTTTTGGCATATTC Shewmr4_2560 3049699 - 3047441 - | binding-protein-dependent transport systems inner membrane component Shewmr4_2561 3049899 - 3050399 + | ACT domain-containing protein TERM 3756 3050410 - 3050459 + T 100 -14.6 -3.12446 | gap 2, opp_overlap 3050423, overlap 3050423 GTTAACCCTCAACCC CTT-CAATAAAAAACGCCGC-GGG CACT CCCAGCGGCGTTTTTTATGGTGAG TTAACTGACTTTCTG TERM 3757 3050423 - 3050445 + T 100 -12.7 -5.31877 | gap 1, opp_overlap 3050423, overlap 3050410 CCCTTCAATAAAAAA CGCCGC-GGG CACT CCCAGCGGCG TTTTTTATGGTGAGT TERM 3758 3050445 - 3050423 - T 100 -12.7 -5.4505 | gap 1, opp_overlap 3050423 3050410 CCCTTCAATAAAAAA CGCCGC-GGG CACT CCCAGCGGCG TTTTTTATGGTGAGT Shewmr4_2562 3051368 - 3050460 - | hypothetical protein TERM 3759 3050635 - 3050655 + g 71 -7.5 -4.07568 | CTCAAAATAATCGCC GCGTGCGCA GGA TGAGCATGC TTTTGCGCCAGCACC Shewmr4_2563 3052567 - 3051494 - | putative esterase TERM 3760 3052895 - 3052867 - g 78 -3.8 -5.10029 | gap 1 AGGAACGCTAAAAAA GCTGCGCGCACAC TTAG ATGAG-GCGCAAC AAGTACAGTATCAAC TERM 3761 3053130 - 3053168 + G 76 -8.3 -4.13246 | gap 1, overlap 3053135 GTACTTGCCGCGAGC CAGAGTG-GGCACAAAGC CATT GTTTTGTGCCGCATTATG TTTATCTATCCAATA TERM 3762 3053135 - 3053163 + G 75 -9 -3.95348 | gap 1, overlap 3053130 TGCCGCGAGCCAGAG TG-GGCACAAAGC CATT GTTTTGTGCCGCA TTATGTTTATCTATC Shewmr4_2564 3052847 - 3053671 + | hypothetical protein TERM 3763 3053695 - 3053733 + T 100 -13.2 -3.46509 | opp_overlap 3053698, overlap 3053689 AAAACTCTCGTCAAT TGAGTGTGTTGAGCGCCG CTA TGGCAGTCAGCACACTCA TTGCTCTTATTGCAA Shewmr4_2565 3054294 - 3053896 - | hypothetical protein TERM 3764 3054453 - 3054423 - R 100 -15.6 -3.21593 | opp_overlap 3054429, overlap 3054406 3054424 3054426 3054429 TATGTTCCCACAAGA GCATAAGGCGAGTA TCT TACTCGCCTTATGG GGATACCTTATGACA TERM 3765 3054452 - 3054424 - R 100 -19.1 -2.52742 | opp_overlap 3054429, overlap 3054406 3054423 3054426 3054429 ATGTTCCCACAAGAG CATAAGGCGAGTA TCT TACTCGCCTTATG GGGATACCTTATGAC TERM 3766 3054450 - 3054426 - R 100 -15.9 -2.80074 | opp_overlap 3054429, overlap 3054406 3054424 3054423 3054429 GTTCCCACAAGAGCA TAAGGCGAGTA TCT TACTCGCCTTA TGGGGATACCTTATG TERM 3767 3054447 - 3054429 - R 100 -13.2 -3.54771 | opp_overlap 3054429, overlap 3054426 3054424 3054423 CCCACAAGAGCATAA GGCGAGTA TCT TACTCGCC TTATGGGGATACCTT TERM 3768 3054429 - 3054447 + r 100 -13.2 -3.3164 | opp_overlap 3054426 3054424 3054423 3054429 CCCACAAGAGCATAA GGCGAGTA TCT TACTCGCC TTATGGGGATACCTT Shewmr4_2566 3055144 - 3054542 - | hypothetical protein TERM 3769 3055323 - 3055313 - H 75 -8.2 -3.89346 | TTGTTACTTTATAAA GCCC GCA GGGC GTATAGGCGCGGCCC TERM 3770 3055753 - 3055767 + G 79 -7.2 -4.56597 | GAGGGCAAGAGCATC GCTAAA CCC TTTAGC TTTTTGCAAGCCGCA Shewmr4_2567 3055453 - 3056046 + | lysine exporter protein LysE/YggA Shewmr4_2568 3056074 - 3056622 + | hypothetical protein Shewmr4_2569 3057182 - 3056760 - | hypothetical protein TERM 3771 3058459 - 3058442 - g 79 -5.5 -5.00616 | opp_overlap 3058441 3058451 GGTCGTGGTAAAAAA GCCGTCA ACGA TGATGGC ATCTGTGTTGAAGTT Shewmr4_2570 3057539 - 3059104 + | peptidase S8 and S53, subtilisin, kexin, sedolisin TERM 3772 3059176 - 3059134 - T 72 -9.5 -3.19936 | gap 1, opp_overlap 3059140 3059147, overlap 3059147 AATCAGCCAAGGTAA TC-CCAATAAAAAACCAGCA CTTG TGCTGGTTTTTTATTATCGA CAAGGTTTACTTAAA TERM 3773 3059140 - 3059169 + T 100 -15.3 -3.2964 | opp_overlap 3059134 3059147, overlap 3059147 CCAAGGTAATCCCAA TAAAAAACCAGCA CTTG TGCTGGTTTTTTA TTATCGACAAGGTTT TERM 3774 3059147 - 3059162 + T 100 -9 -5.55769 | opp_overlap 3059134 3059147, overlap 3059140 AATCCCAATAAAAAA CCAGCA CTTG TGCTGG TTTTTTATTATCGAC TERM 3775 3059162 - 3059147 - T 100 -9 -5.4756 | opp_overlap 3059147 3059140, overlap 3059134 AATCCCAATAAAAAA CCAGCA CTTG TGCTGG TTTTTTATTATCGAC Shewmr4_2571 3060013 - 3059183 - | hypothetical protein TERM 3776 3059386 - 3059367 - G 76 -7.8 -4.35461 | overlap 3059368 CGAATACGATTAAAA TCCGCTGA GTTT TCAGCGGG TAACTGGATCACTAG TERM 3777 3059385 - 3059368 - G 76 -11.3 -3.20553 | overlap 3059367 GAATACGATTAAAAT CCGCTGA GTTT TCAGCGG GTAACTGGATCACTA Shewmr4_2572 3061607 - 3060258 - | acetyl-CoA hydrolase/transferase TERM 3778 3061779 - 3061761 - R 74 -6.6 -4.27316 | TGCGTTAAGTCAAAA CTCACGCC CAA AGCGAGAG CCGTTAATCCAAACG Shewmr4_2573 3062904 - 3061783 - | ABC-2 type transporter Shewmr4_2574 3063934 - 3062894 - | ABC transporter related TERM 3779 3063182 - 3063226 + g 74 -7 -4.3739 | gap 1, opp_overlap 3063178 CACTTCAATGACCCG CGCACCCATGGC-CGCCATGA GTTG TTGCGGCGAGCCGTCGGCGCG TTTTATCCCGCGCTC TERM 3780 3063573 - 3063607 + g 82 -7.8 -4.69664 | GCCACAAACTCAAGG TTTTCCCGCACCGACA AAT TGTCGTAGAGGGAGAA TTTTTGCGTCATATA Shewmr4_2575 3064944 - 3063931 - | secretion protein HlyD family protein TERM 3781 3064331 - 3064359 + g 70 -9.5 -3.19157 | TCCTGCGCCACGCCA GCCATGGCCGC CTCGACT GCGGCTCTGGC TTGCTCGAGTTGCTC Shewmr4_2576 3065642 - 3064941 - | TetR family transcriptional regulator TERM 3782 3065625 - 3065609 - G 76 -11.5 -3.30701 | GGGTAGCAAATGGAA CCACCCC ACG GGGGCGG CTGGGAATAAGCGAC TERM 3783 3065712 - 3065738 + r 84 -11 -3.59979 | opp_overlap 3065712 AAGGCAGCAGTTAAA TTCCTCATTTTG ATT CAAATTGAGGAA TTTAACCTAAAAGGC TERM 3784 3065738 - 3065712 - R 84 -11 -3.69094 | opp_overlap 3065712 AAGGCAGCAGTTAAA TTCCTCATTTTG ATT CAAATTGAGGAA TTTAACCTAAAAGGC Shewmr4_2577 3066218 - 3065871 - | hypothetical protein TERM 3785 3067500 - 3067490 - g 76 -4.6 -5.0065 | TACCGATAAACAAAA GACC CGA GGCC AAGAACCGTTAAGCC Shewmr4_2578 3066717 - 3067574 + | hypothetical protein Shewmr4_2579 3067585 - 3068913 + | hypothetical protein TERM 3786 3068961 - 3068981 + F 100 -15.5 -6.06723 | CTTCGCAACCGCTTT GAGTGCCCA CCT TGGGCACTC TTTTTTTTTGAGCAC TERM 3787 3069257 - 3069245 - f 71 -4.7 -4.72127 | TAACAATAAAAATAA CAGCG ACT CGCGG CTCCCTATTTCCCGC TERM 3788 3069594 - 3069613 + G 83 -10 -4.13767 | opp_overlap 3069585 CGCAAACGCGGTTAT CGCACCTT AGCC GAGGTGCG TTTTCCCGTCGGCCA TERM 3789 3070300 - 3070290 - g 70 -8.2 -3.65902 | opp_overlap 3070290, overlap 3070291 CTGATGGCAGGCAAA GCGC GCG GCGC CCATTTCGACTTAGC Shewmr4_2580 3069303 - 3072494 + | lysine decarboxylase transcriptional regulator, CadC Shewmr4_2581 3072545 - 3072922 + | hypothetical protein TERM 3790 3072949 - 3072928 - f 79 -10.9 -2.98361 | gap 1, opp_overlap 3072929 3072930, overlap 3072923 AAATCTATAATTAGA GCGGGACTGC TAA GCAGTCCC-C TTTTTTCCCCTTCCA TERM 3791 3072929 - 3072949 + F 100 -11.1 -5.09426 | opp_overlap 3072928 3072923, overlap 3072930 AATCTATAATTAGAG CGGGACTGC TAA GCAGTCCCC TTTTTTCCCCTTCCA TERM 3792 3072930 - 3072948 + F 100 -14.6 -3.64933 | opp_overlap 3072928 3072923, overlap 3072929 ATCTATAATTAGAGC GGGACTGC TAA GCAGTCCC CTTTTTTCCCCTTCC TERM 3793 3073217 - 3073207 - f 82 -8.2 -4.38712 | GTCATCCTCAGAAAA GCGC CTA GCGC AGATGATTAAAGCTC Shewmr4_2582 3073249 - 3074268 + | diguanylate cyclase TERM 3794 3074931 - 3074919 - g 87 -7.7 -5.05782 | ATTTATCCTAAAAAA CATGC AAA GCATG AACTCCACTTAATGC Shewmr4_2583 3074328 - 3077018 + | FAD linked oxidase domain-containing protein TERM 3795 3077018 - 3077064 + F 73 -9 -3.48593 | overlap 3077061 TAAGTCGATTGTGTA GCTGAGGATTGATGGCTTG-CT AGCGC AGTCAACCCATCAAT-CTCGGC TTGTGTCGGGCGGTC Shewmr4_2584 3077195 - 3078091 + | hypothetical protein Shewmr4_2585 3078160 - 3078690 + | Lipocalin family protein TERM 3796 3078781 - 3078738 - T 100 -16.2 -3.16783 | opp_overlap 3078745 3078751, overlap 3078745 3078751 TACTCAAGCTAAAAG CCAGCAATAAAAACGCCGCT AATA AGCGGCGTTTTTGTTTCTGA ACACTTAAGGCAAAA TERM 3797 3078745 - 3078774 + T 100 -15.9 -3.87869 | opp_overlap 3078738 3078745 3078751, overlap 3078751 GCTAAAAGCCAGCAA TAAAAACGCCGCT AATA AGCGGCGTTTTTG TTTCTGAACACTTAA TERM 3798 3078774 - 3078745 - T 100 -13.7 -3.27786 | opp_overlap 3078745 3078751, overlap 3078738 3078751 GCTAAAAGCCAGCAA TAAAAACGCCGCT AATA AGCGGCGTTTTTG TTTCTGAACACTTAA TERM 3799 3078768 - 3078751 - T 100 -12.7 -5.14163 | opp_overlap 3078751 3078745, overlap 3078745 3078738 AGCCAGCAATAAAAA CGCCGCT AATA AGCGGCG TTTTTGTTTCTGAAC TERM 3800 3078751 - 3078768 + T 100 -12.7 -5.38054 | opp_overlap 3078745 3078738 3078751, overlap 3078745 AGCCAGCAATAAAAA CGCCGCT AATA AGCGGCG TTTTTGTTTCTGAAC Shewmr4_2586 3080444 - 3078804 - | ABC transporter related TERM 3801 3080771 - 3080809 + r 75 -10.2 -2.79574 | opp_overlap 3080775 3080778, overlap 3080768 3080782 3080805 GCGGATATTTATGTT CAAACAATACAGCCCGCA AAA TGCGGGCTGGATTGGGAG TGCTTACTCACTGTA TERM 3802 3080805 - 3080775 - R 100 -18.4 -3.57971 | opp_overlap 3080771 3080768 3080782, overlap 3080778 ATATTTATGTTCAAA CAATACAGCCCGCA AAA TGCGGGCTGGATTG GGAGTGCTTACTCAC TERM 3803 3080802 - 3080778 - R 100 -14.3 -3.92542 | opp_overlap 3080771 3080768 3080782, overlap 3080775 TTTATGTTCAAACAA TACAGCCCGCA AAA TGCGGGCTGGA TTGGGAGTGCTTACT TERM 3804 3080782 - 3080798 + r 91 -13.7 -2.53382 | opp_overlap 3080778 3080775, overlap 3080771 3080768 TGTTCAAACAATACA GCCCGCA AAA TGCGGGC TGGATTGGGAGTGCT Shewmr4_2587 3083148 - 3080872 - | copper-translocating P-type ATPase TERM 3805 3082510 - 3082545 + g 91 -16.2 -2.56596 | gap 1, overlap 3082500 3082506 CTGCACCGCTTCGCT GGTCTTGCCC-CGAGCT TTC AGCTCGAGGGCGTGACC TAAGTTAATCAAGCC TERM 3806 3083071 - 3083083 + g 71 -6.2 -4.4267 | ACTCACATTCGGCTC GGCC GCGAA GGCC TTTTCAATTTTGGCC Shewmr4_2588 3083297 - 3083686 + | MerR family transcriptional regulator TERM 3807 3083721 - 3083704 - T 100 -8.4 -5.24129 | opp_overlap 3083704 3083719 CGCTGCCATAAAAAA GCCTGC TTAGAT GCAGGC TTGTTAAACGAGTCT TERM 3808 3083704 - 3083721 + T 73 -8.4 -3.62224 | opp_overlap 3083704, overlap 3083719 CGCTGCCATAAAAAA GCCTGC TTAGAT GCAGGC TTGTTAAACGAGTCT TERM 3809 3083719 - 3083735 + T 73 -5.1 -4.60487 | opp_overlap 3083704, overlap 3083704 GCCTGCTTAGATGCA GGCTTGT TAA ACGAGTC TTTTTAAAGCTAGTG Shewmr4_2589 3085778 - 3083745 - | peptidase S9 prolyl oligopeptidase TERM 3810 3085824 - 3085836 + r 72 -6.2 -4.24654 | opp_overlap 3085809 CCGAAATATGCAACT GCCC TTTTC GGGC TATTTTTTCACTTTT Shewmr4_2590 3086078 - 3085836 - | hypothetical protein TERM 3811 3086237 - 3086262 + r 91 -10.5 -4.08485 | opp_overlap 3086242, overlap 3086242 AATCTTTACCAAATA AAAAACCGAGC AAAA GCTCGGTTTTG TTTAATTTCAATAAG TERM 3812 3086257 - 3086242 - R 100 -10.4 -5.68438 | opp_overlap 3086242 3086237 TTACCAAATAAAAAA CCGAGC AAAA GCTCGG TTTTGTTTAATTTCA TERM 3813 3086242 - 3086257 + r 100 -10.4 -5.04868 | opp_overlap 3086242, overlap 3086237 TTACCAAATAAAAAA CCGAGC AAAA GCTCGG TTTTGTTTAATTTCA fabG 3087044 - 3086286 - | 3-ketoacyl-(acyl-carrier-protein) reductase Shewmr4_2592 3087966 - 3087064 - | 3-hydroxyisobutyrate dehydrogenase TERM 3814 3087835 - 3087852 + g 74 -11.3 -3.05816 | opp_overlap 3087834 3087833 GCTCGACACTAAAGC GCCTTGG TCGG CCAAGGC TTGCATGGCGGCTGG TERM 3815 3088020 - 3088066 + r 86 -11.7 -3.24166 | gap 1, opp_overlap 3088028, overlap 3088028 ATAGTTGTTATTCCA GACAA-AAATGGCAGGCAAAGC ATTC GCTTTGCCTGCCATCGATTGGC TTAGCTTAATTGGCT TERM 3816 3088028 - 3088057 + r 100 -20.9 -2.57192 | opp_overlap 3088028, overlap 3088020 TATTCCAGACAAAAA TGGCAGGCAAAGC ATTC GCTTTGCCTGCCA TCGATTGGCTTAGCT TERM 3817 3088057 - 3088028 - R 100 -20.9 -4.9792 | opp_overlap 3088028 3088020 TATTCCAGACAAAAA TGGCAGGCAAAGC ATTC GCTTTGCCTGCCA TCGATTGGCTTAGCT Shewmr4_2593 3089215 - 3088067 - | enoyl-CoA hydratase/isomerase TERM 3818 3088327 - 3088354 + g 71 -6.2 -4.41348 | gap 1, opp_overlap 3088329, overlap 3088329 AATGCCAACTGATAG GACTGCCCG-CCA ACA TGGTCGTGCAGGC TTTATTTAACCAGGC Shewmr4_2594 3089988 - 3089215 - | enoyl-CoA hydratase Shewmr4_2595 3091210 - 3090053 - | acyl-CoA dehydrogenase domain-containing protein Shewmr4_2596 3092874 - 3091375 - | methylmalonate-semialdehyde dehydrogenase [acylating] TERM 3819 3091912 - 3091923 + g 71 -7.2 -4.11183 | opp_overlap 3091908 TGGGCTAATCAGCGG GCCG TAAC CGGC TTCTTTATCGTCCCA Shewmr4_2597 3094200 - 3093010 - | acetyl-CoA acetyltransferases TERM 3820 3093617 - 3093627 + g 70 -4.6 -4.62336 | GCACCAGAGTTAATG GCCG CGT TGGC TTTTTCCAGTGAGCT TERM 3821 3094618 - 3094586 - R 100 -14.9 -3.33671 | opp_overlap 3094574, overlap 3094588 ATAGCCACTTGATAA GACGTGTGGCATTGG TTG CCAATGCCACACGGT TAAAACGAGCATCTC TERM 3822 3094616 - 3094588 - R 100 -21.9 -3.23572 | opp_overlap 3094574, overlap 3094586 AGCCACTTGATAAGA CGTGTGGCATTGG TTG CCAATGCCACACG GTTAAAACGAGCATC Shewmr4_2598 3095600 - 3094659 - | homoserine O-succinyltransferase Shewmr4_2599 3096104 - 3095670 - | hypothetical protein Shewmr4_2600 3096189 - 3096965 + | short-chain dehydrogenase/reductase SDR TERM 3823 3097029 - 3097002 - T 100 -12.2 -4.6526 | gap 1, opp_overlap 3097003 3097009, overlap 3096966 3097009 ATAAACTGCGAAAAA CAAAAAAGGAGCC ACA GGCTCC-TTTTTG TTACTTTAAAATCAG TERM 3824 3097003 - 3097029 + T 100 -12.4 -3.53031 | opp_overlap 3097002 3097009, overlap 3097009 TAAACTGCGAAAAAC AAAAAAGGAGCC ACA GGCTCCTTTTTG TTACTTTAAAATCAG TERM 3825 3097009 - 3097023 + T 100 -11.4 -5.24551 | opp_overlap 3097002 3097009, overlap 3097003 GCGAAAAACAAAAAA GGAGCC ACA GGCTCC TTTTTGTTACTTTAA TERM 3826 3097023 - 3097009 - T 100 -11.4 -5.93252 | opp_overlap 3097009 3097003, overlap 3097002 GCGAAAAACAAAAAA GGAGCC ACA GGCTCC TTTTTGTTACTTTAA Shewmr4_2601 3097696 - 3097049 - | outer membrane protein W TERM 3827 3097704 - 3097720 + r 84 -3.7 -5.49568 | overlap 3097706 TTCATCATCATACTC CATATGT ACA ACATAGG TTTTTGTTTTAAATT Shewmr4_2602 3098742 - 3098155 - | hypothetical protein TERM 3828 3098939 - 3098955 + r 76 -9.5 -3.41527 | opp_overlap 3098939 CCATCGCTATGATAA GACTCAT AAA ATGAGTC TTATCATCCAGGTTA TERM 3829 3098955 - 3098939 - R 76 -9.5 -3.41051 | opp_overlap 3098939 CCATCGCTATGATAA GACTCAT AAA ATGAGTC TTATCATCCAGGTTA Shewmr4_2603 3099676 - 3099026 - | maleylacetoacetate isomerase TERM 3830 3099725 - 3099709 - R 100 -13.7 -5.42259 | opp_overlap 3099706 3099705 TCATCCTGAAAAAAA CGGGGCT AAA AGCCCCG TCAATATTATCTGTC Shewmr4_2604 3100747 - 3099761 - | fumarylacetoacetate (FAA) hydrolase TERM 3831 3100774 - 3100784 + r 80 -4.6 -5.1634 | TGCTTCTACGGCTCG GCGT ACT GCGC TTTTTATCTATTTAT Shewmr4_2605 3102623 - 3101085 - | transcriptional regulator, TyrR TERM 3832 3102882 - 3102852 - R 81 -5.4 -5.19251 | opp_overlap 3102853, overlap 3102853 TAACAGGAAGAAAAA CTCAGCGTCAAAAT TTA ATTAAGACGCTGAT TTAAATGTTTAATTT TERM 3833 3102853 - 3102881 + r 78 -8.9 -3.82811 | opp_overlap 3102853 3102852 AACAGGAAGAAAAAC TCAGCGTCAAAAT TTA ATTAAGACGCTGA TTTAAATGTTTAATT TERM 3834 3102881 - 3102853 - R 75 -8.9 -3.69924 | opp_overlap 3102853, overlap 3102852 AACAGGAAGAAAAAC TCAGCGTCAAAAT TTA ATTAAGACGCTGA TTTAAATGTTTAATT phhB 3103237 - 3102899 - | pterin-4-alpha-carbinolamine dehydratase TERM 3835 3103312 - 3103328 + r 70 -5.8 -4.33153 | ATTCGTTTTTTAATG GTCAGC CATTA GCTGGC TTTCTTGGTCTTGGG phhA 3104135 - 3103320 - | phenylalanine 4-monooxygenase Shewmr4_2608 3104459 - 3105367 + | UDP-glucose pyrophosphorylase TERM 3836 3105475 - 3105449 - g 77 -11 -3.37344 | CGGGGAGCGAAGTAA TTGTGTTAGACA ACC TGTCTAACTCAA GTATCGAAGCCCTTA TERM 3837 3105902 - 3105923 + G 78 -10.1 -3.90112 | TACGTTACTTCAACC CCGTTGGCG CCCA TGCCAGCGG TTTGATTGGCGAAGA Shewmr4_2609 3105367 - 3106380 + | UDP-galactose 4-epimerase TERM 3838 3106390 - 3106413 + F 90 -7.5 -5.12068 | gap 1, opp_overlap 3106390 GGCTGATCACCTAAA TGGCTTGTGG TAACT CC-CAAGCCA TTTTTCTTAACTATC Shewmr4_2610 3106454 - 3106930 + | ferredoxin-type protein NapF Shewmr4_2611 3107033 - 3107479 + | hypothetical protein Shewmr4_2612 3107715 - 3108767 + | LysR family transcriptional regulator TERM 3839 3108832 - 3108792 - f 100 -12.9 -3.53091 | opp_overlap 3108792, overlap 3108795 AGTGTTGCCCTCAAA CAGTTGACACTTTCTTT GGTGTAA AAAGAAAGTGTCAAATG TTAAATTCCAGAATT TERM 3840 3108792 - 3108832 + F 95 -12.9 -3.17571 | opp_overlap 3108792 3108795 AGTGTTGCCCTCAAA CAGTTGACACTTTCTTT GGTGTAA AAAGAAAGTGTCAAATG TTAAATTCCAGAATT TERM 3841 3108829 - 3108795 - f 91 -13.2 -2.60496 | opp_overlap 3108792, overlap 3108792 GTTGCCCTCAAACAG TTGACACTTTCTTT GGTGTAA AAAGAAAGTGTCAA ATGTTAAATTCCAGA TERM 3842 3109232 - 3109258 + G 79 -7.4 -4.57569 | gap 1, overlap 3109233 TACAATAAATCTCTA C-TGGCACTAG CACTCA CTAGTGCCATG TTTTTAACCGCCTGC TERM 3843 3109233 - 3109256 + G 84 -11.1 -3.90316 | overlap 3109232 ACAATAAATCTCTAC TGGCACTAG CACTCA CTAGTGCCA TGTTTTTAACCGCCT TERM 3844 3109335 - 3109368 + G 79 -8.9 -4.25104 | gap 1, opp_overlap 3109297 3109316, overlap 3109338 CCCCTGGAACGCCCG GAACCC-CTGGCACAC CTG GTTTACCAGCGGGTTC TTTTGCTAAAACCGC Shewmr4_2613 3109205 - 3111493 + | decaheme cytochrome c TERM 3845 3111552 - 3111570 + T 100 -16 -5.28778 | opp_overlap 3111550 TCTCTGCAACTTATT GGGGCTCC TTC GGAGCCCC TTTTTTATCGGTACT Shewmr4_2614 3112282 - 3111587 - | hypothetical protein TERM 3846 3112210 - 3112199 - G 74 -7.2 -4.26305 | overlap 3112181 AAAACCTAAGACAAA GGCG CTGG CGCC CACAATCGTTAAGGT Shewmr4_2615 3113021 - 3112287 - | hypothetical protein TERM 3847 3113104 - 3113072 - R 100 -10 -4.77698 | gap 1, opp_overlap 3113078 3113091, overlap 3113078 TAACATCAAAAGAAA GCAA-AACGCATCGC CAAG GCGATGCGTTGTCAC GAGGGAAAACGTAAC TERM 3848 3113097 - 3113078 - R 100 -13.6 -4.76478 | opp_overlap 3113078 3113091, overlap 3113072 CAAAAGAAAGCAAAA CGCATCGC CAAG GCGATGCG TTGTCACGAGGGAAA TERM 3849 3113078 - 3113097 + r 100 -13.6 -3.28712 | opp_overlap 3113078 3113072, overlap 3113091 CAAAAGAAAGCAAAA CGCATCGC CAAG GCGATGCG TTGTCACGAGGGAAA Shewmr4_2616 3114049 - 3113129 - | fructokinase Shewmr4_2617 3114918 - 3114112 - | 3'(2'),5'-bisphosphate nucleotidase Shewmr4_2618 3116344 - 3115265 - | dTDP-4-dehydrorhamnose reductase TERM 3850 3115503 - 3115527 + g 79 -11.5 -3.53343 | opp_overlap 3115503 3115502 GCTTTATCTAATAAC TTCAGTGCCAA GGC TTGGCGCTGGA TTTCGAGGGCAAATT Shewmr4_2619 3117140 - 3116382 - | putative hydrolase TERM 3851 3117006 - 3116992 - G 70 -2.7 -4.75063 | overlap 3116993 ACAAAATGCCAAAAA TGCGG TGCAT CCGCC ATCGCCGGGCCATGG Shewmr4_2620 3120476 - 3117228 - | SNF2-related protein TERM 3852 3117529 - 3117539 + g 70 -8.2 -3.66028 | opp_overlap 3117528 CTGATTAAAAATACC GGCG TAT CGCC TTCTTGGAACTTATC TERM 3853 3118607 - 3118588 - G 81 -5.7 -5.0133 | TATTCCTTTAAAAAA CAAAGCC AATTTA GGCCTTG CTGCTGATAAGCCCG TERM 3854 3119882 - 3119870 - G 71 -10.5 -3.09273 | opp_overlap 3119872 GCGCCTTAAGATACA GGCGC GAA GCGCC GTGGCGTCTGGTCGA TERM 3855 3120645 - 3120618 - R 76 -9.9 -3.32521 | gap 1, opp_overlap 3120619 3120622, overlap 3120620 3120622 ACGAGAGCCGGATAA CATACCCGCAGG GATCA CCTGCGGGT-CG TTAGCTCATGCAAAC TERM 3856 3120644 - 3120620 - R 84 -11.4 -3.22951 | opp_overlap 3120619 3120622, overlap 3120618 3120622 GAGAGCCGGATAACA TACCCGCAGG GATCA CCTGCGGGTC GTTAGCTCATGCAAA TERM 3857 3120642 - 3120622 - R 100 -14 -3.17622 | opp_overlap 3120619 3120622, overlap 3120620 3120618 GAGCCGGATAACATA CCCGCAGG GATCA CCTGCGGG TCGTTAGCTCATGCA TERM 3858 3120622 - 3120642 + r 95 -14 -2.76263 | opp_overlap 3120622 3120620 3120618, overlap 3120619 GAGCCGGATAACATA CCCGCAGG GATCA CCTGCGGG TCGTTAGCTCATGCA Shewmr4_2621 3122484 - 3120661 - | hypothetical protein Shewmr4_2622 3123011 - 3123220 + | cold-shock DNA-binding protein family protein TERM 3859 3123260 - 3123293 + T 80 -10.6 -3.46304 | gap 1, opp_overlap 3123262 3123268, overlap 3123268 AACAACAAGTTTACA TACAAAAATGCCGAC TCAGT GTCGGCATTTTT-TA TTGGTGTCTTTTGGG TERM 3860 3123292 - 3123262 - T 83 -11.3 -2.93367 | opp_overlap 3123260 3123268, overlap 3123268 CAACAAGTTTACATA CAAAAATGCCGAC TCAGT GTCGGCATTTTTT ATTGGTGTCTTTTGG TERM 3861 3123268 - 3123286 + T 100 -10.3 -5.5353 | opp_overlap 3123262 3123268, overlap 3123260 GTTTACATACAAAAA TGCCGAC TCAGT GTCGGCA TTTTTTATTGGTGTC TERM 3862 3123286 - 3123268 - T 100 -10.3 -5.03994 | opp_overlap 3123268 3123260, overlap 3123262 GTTTACATACAAAAA TGCCGAC TCAGT GTCGGCA TTTTTTATTGGTGTC TERM 3863 3123479 - 3123495 + T 77 -3.6 -5.18357 | overlap 3123458 3123481 CAGACGAACCCTTCG GGCAGC ATTTG GCTGGC TTTTTTGCTGCGTTA Shewmr4_2623 3125554 - 3123608 - | potassium efflux system protein TERM 3864 3125147 - 3125161 + g 74 -10 -3.56643 | GCGCCTTAGCCAGCC CTGCTC ATT GAGCAG TTTCAGCACTATGGC Shewmr4_2624 3125724 - 3126614 + | diguanylate cyclase Shewmr4_2625 3128062 - 3126665 - | tRNA(Ile)-lysidine synthetase dnaE 3131618 - 3128142 - | DNA polymerase III subunit alpha TERM 3865 3131711 - 3131663 - R 77 -3.8 -5.22794 | gap 1, opp_overlap 3131676, overlap 3131671 3131676 ACAATCACTAAAAAA GCAGACTAGCAAAGTCAC-AGCC CTGG GGCTAGTGACTTCGCTCTCAAGC TGAAATGAAAACACC TERM 3866 3131703 - 3131671 - R 93 -13.6 -2.79632 | gap 1, opp_overlap 3131676, overlap 3131663 3131676 TAAAAAAGCAGACTA GCAAAGTCAC-AGCC CTGG GGCTAGTGACTTCGC TCTCAAGCTGAAATG TERM 3867 3131698 - 3131676 - R 75 -8.5 -3.83066 | gap 1, opp_overlap 3131676, overlap 3131671 3131663 AAGCAGACTAGCAAA GTCAC-AGCC CTGG GGCTAGTGAC TTCGCTCTCAAGCTG Shewmr4_2627 3132365 - 3131736 - | RNase HII lpxB 3133522 - 3132365 - | lipid-A-disaccharide synthase TERM 3868 3132722 - 3132712 - G 71 -6.8 -4.26903 | CCGACGCCAGTAAAA TGCC ATC GGCA GCAGCCATCACTTCG TERM 3869 3133490 - 3133465 - G 91 -11.1 -4.18762 | overlap 3133467 AACCTGCACCTAAAA TATCGCCGGAG AGTT CTCCGGCGACC ATTGCAAACACTAAT TERM 3870 3133488 - 3133467 - G 100 -15.9 -3.69216 | overlap 3133465 CCTGCACCTAAAATA TCGCCGGAG AGTT CTCCGGCGA CCATTGCAAACACTA Shewmr4_2629 3134409 - 3133639 - | UDP-N-acetylglucosamine acyltransferase Shewmr4_2630 3134870 - 3134406 - | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase TERM 3871 3134902 - 3134889 - R 71 -6.7 -4.08767 | opp_overlap 3134889 CCTAGTTCCTCAAAA TTGCC TTAG GGCAA TTACTCTGGTGTATT Shewmr4_2631 3135928 - 3134903 - | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase TERM 3872 3135790 - 3135752 - G 90 -13.3 -3.80733 | gap 1, opp_overlap 3135752 3135754, overlap 3135754 TTTAGCCGACAATAA CACCGCACTC-GCTTGAG TTAA CTCAAGCTGAGCACGGTA TTTGCTGTTGGCTAA TERM 3873 3135788 - 3135754 - G 84 -13.7 -3.48824 | gap 1, opp_overlap 3135754 3135752, overlap 3135752 TAGCCGACAATAACA CCGCACTC-GCTTGAG TTAA CTCAAGCTGAGCACGG TATTTGCTGTTGGCT TERM 3874 3135754 - 3135788 + g 70 -9.3 -3.55486 | gap 1, opp_overlap 3135752 3135754, overlap 3135752 TAGCCGACAATAACA CCGCACTC-GCTTGAG TTAA CTCAAGCTGAGCACGG TATTTGCTGTTGGCT TERM 3875 3135821 - 3135810 - G 70 -2.2 -5.00616 | CTGTTGGCTAAAAAA GAGA TTTG TCCC GCTGTGGCATGTTCA Shewmr4_2632 3136429 - 3135932 - | outer membrane chaperone Skp (OmpH) Shewmr4_2633 3138975 - 3136495 - | surface antigen (D15) Shewmr4_2634 3140377 - 3139007 - | peptidase RseP TERM 3876 3140402 - 3140436 + r 78 -9.4 -3.68506 | opp_overlap 3140402 TATGTCATCGTCAAA TTCGCTTATTCCTCAT AAA ATGGGGATTAAGCCAA TTTCGCTAACTGTTC Shewmr4_2635 3141618 - 3140428 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase Shewmr4_2636 3142480 - 3141623 - | phosphatidate cytidylyltransferase Shewmr4_2637 3143328 - 3142501 - | undecaprenyl pyrophosphate synthetase TERM 3877 3142942 - 3142928 - G 74 -4.2 -4.86033 | AAACGCGCAGAAAAA CGGC TGATATC GCCG ATGATATTTAATCGG TERM 3878 3143382 - 3143356 - R 100 -13.8 -4.33956 | TTTAAAATAGACAAA CGCCGTGTAG TATACCC CTACACGGCG TAGCAACTCTAGCTT Shewmr4_2638 3143968 - 3143411 - | ribosome recycling factor pyrH 3144727 - 3143999 - | uridylate kinase TERM 3879 3144745 - 3144780 + r 71 -8.2 -3.41222 | opp_overlap 3144749 3144752, overlap 3144743 3144754 TTTTTTGTCCTGGTC ATAACAAGACCGCAGC CATT GCTGCGGTCTTGGGGG TATTTAGCGTTGGCG TERM 3880 3144776 - 3144749 - R 100 -20 -3.28712 | opp_overlap 3144745 3144743 3144754, overlap 3144752 TTGTCCTGGTCATAA CAAGACCGCAGC CATT GCTGCGGTCTTG GGGGTATTTAGCGTT TERM 3881 3144773 - 3144752 - R 100 -15.9 -3.78934 | opp_overlap 3144745 3144743 3144754, overlap 3144749 TCCTGGTCATAACAA GACCGCAGC CATT GCTGCGGTC TTGGGGGTATTTAGC TERM 3882 3144754 - 3144771 + r 93 -12.7 -3.07029 | opp_overlap 3144752 3144749, overlap 3144745 3144743 CTGGTCATAACAAGA CCGCAGC CATT GCTGCGG TCTTGGGGGTATTTA tsf 3145648 - 3144797 - | elongation factor Ts TERM 3883 3145365 - 3145339 - G 76 -11 -3.24411 | overlap 3145337 3145335 3145340 AGTCTTCTAAAGACA CTTTAGACGCTG CAG CAACGTCTAAAA CAGCGTTAGCAAAAC TERM 3884 3145364 - 3145340 - G 73 -12.3 -2.54325 | overlap 3145339 3145337 3145335 GTCTTCTAAAGACAC TTTAGACGCTG CAG CAACGTCTAAA ACAGCGTTAGCAAAA TERM 3885 3145597 - 3145618 + g 80 -10.1 -4.0098 | TACAATCCATCATGC CTGCGCCAG TACG CTCGCGCAG TTCTTTAACTTGGGC TERM 3886 3145712 - 3145693 - R 100 -15 -4.60797 | opp_overlap 3145695 TTTGCAGATATAAAA CAGGGGCC GAAT GGCCCCTG TTAACCAATCAAAAT TERM 3887 3145695 - 3145710 + r 86 -11.8 -3.03124 | opp_overlap 3145693 TGCAGATATAAAACA GGGGCC GAAT GGCCCC TGTTAACCAATCAAA TERM 3888 3145734 - 3145767 + r 75 -9.1 -3.6968 | gap 1, opp_overlap 3145740 3145741, overlap 3145737 3145740 AATCAAAATCTTGGT TAATAAGG-GTGATGA AAC TCATCCCGCCTTATTA TTATTCGGCTTCTAC rpsB 3146496 - 3145768 - | 30S ribosomal protein S2 Shewmr4_2642 3146767 - 3147603 + | methionine aminopeptidase TERM 3889 3149790 - 3149768 - g 76 -3.4 -5.18726 | overlap 3149770 3149774 GCTCGATAATAAAAA CATCAACGTC CAC GACGCTAACA TTATGACGTCGAAGG Shewmr4_2643 3147672 - 3150257 + | PII uridylyl-transferase dapD 3150276 - 3151100 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 3890 3151159 - 3151120 - f 100 -13.8 -3.55761 | opp_overlap 3151130, overlap 3151105 3151130 TATTCACGCTGTAAA CAATCAAAAATGCCAAGC TAAT GCTTGGCATTTTTTATGG TAAAAACACACGCCA TERM 3891 3151149 - 3151130 - f 100 -12.2 -5.04356 | opp_overlap 3151130, overlap 3151120 GTAAACAATCAAAAA TGCCAAGC TAAT GCTTGGCA TTTTTTATGGTAAAA TERM 3892 3151130 - 3151149 + F 100 -12.2 -5.31275 | opp_overlap 3151130 3151120 GTAAACAATCAAAAA TGCCAAGC TAAT GCTTGGCA TTTTTTATGGTAAAA Shewmr4_2645 3151322 - 3151675 + | hypothetical protein TERM 3893 3151698 - 3151714 + T 100 -12.3 -5.16841 | opp_overlap 3151698 3151695 GTCACGGTAAGATTA GGCGTCA ATT TGACGCC TTTTTATTGCTGTCA TERM 3894 3151714 - 3151698 - T 89 -12.3 -2.75074 | opp_overlap 3151698, overlap 3151695 GTCACGGTAAGATTA GGCGTCA ATT TGACGCC TTTTTATTGCTGTCA TERM 3895 3151840 - 3151824 - T 70 -5.1 -4.45577 | opp_overlap 3151839 ATAAATCCCATAAAA GCGATTA AAT CAACCGC TCCGCCTCTTGGCGG TERM 3896 3151842 - 3151855 + T 71 -9.5 -3.03085 | overlap 3151839 ATTAAATCAACCGCT CCGCC TCTT GGCGG TCCTTATTTGCCATG Shewmr4_2646 3153756 - 3151828 - | metal dependent phosphohydrolase TERM 3897 3153838 - 3153857 + r 72 -9.4 -3.09492 | opp_overlap 3153838 3153842, overlap 3153842 ACTCAGGGTGCAATA TTAAGGTG ATTA CACCTTAA TATTGCAATTAACCA TERM 3898 3153857 - 3153838 - R 71 -9.4 -3.03243 | opp_overlap 3153838 3153842, overlap 3153842 ACTCAGGGTGCAATA TTAAGGTG ATTA CACCTTAA TATTGCAATTAACCA purU 3154867 - 3153965 - | formyltetrahydrofolate deformylase Shewmr4_2648 3156478 - 3154997 - | PTS system, glucose-like IIB subunint TERM 3899 3156002 - 3155990 - GR 73 -3.3 -5.00616 | opp_overlap 3155997, overlap 3155998 TCGCCCCTCAAAAAA GGAGA AAA TCGCC GGCAGGCGAATATAT TERM 3900 3156011 - 3155998 - GR 91 -8.1 -4.76171 | opp_overlap 3155997, overlap 3155990 CAAAAAAGGAGAAAA TCGCC GGCA GGCGA ATATATTGGCTCCAG TERM 3901 3156207 - 3156186 - GR 71 -5.8 -4.28018 | AATACGGCAGTAAAA GCGGCGAT ACCTTG ATCGCGGC AAAACCCTATCGCCA TERM 3902 3156394 - 3156374 - GR 93 -12.6 -3.16742 | opp_overlap 3156370 CGCAATCGGGATTAA CAGCGCCT GACTT AGGCGCTG GGCAAATTTAAACCA Shewmr4_2649 3156894 - 3156430 - | flavodoxin Shewmr4_2650 3158178 - 3157324 - | tRNA pseudouridine synthase C TERM 3903 3158013 - 3157999 - G 76 -4.2 -5.0538 | CTGCATCGCAAAAAA GCGC TCACGCC GCGC TAAGTAGCTTCGATG Shewmr4_2651 3158500 - 3158165 - | hypothetical protein TERM 3904 3159113 - 3159087 - g 79 -13 -3.05963 | opp_overlap 3159075 ATTTGCAGTGCAATA TCTCTCGGGACA AAT TGCCCCGAGTGA ATGGCAGCATATTGG Shewmr4_2652 3158632 - 3159645 + | hypothetical protein Shewmr4_2653 3159642 - 3160028 + | hypothetical protein TERM 3905 3160155 - 3160177 + T 100 -19.2 -3.83668 | opp_overlap 3160155 AATATCAAAAAGAAA GGGCGTGGTC TAA GACCACGCCC TTCTGTTCTCTGTTA TERM 3906 3160177 - 3160155 - T 100 -19.2 -4.95618 | opp_overlap 3160155 AATATCAAAAAGAAA GGGCGTGGTC TAA GACCACGCCC TTCTGTTCTCTGTTA TERM 3907 3160977 - 3160949 - T 100 -9.5 -5.5208 | opp_overlap 3160952 3160953, overlap 3160953 GGAGAATAGAAAAAA GAAAGGGGCGCAC TAT GTGCACCCCATTT ATCCTCTGCAAGCCA TERM 3908 3160952 - 3160974 + T 80 -9 -4.0162 | opp_overlap 3160949 3160953, overlap 3160953 GAATAGAAAAAAGAA AGGGGCGCAC TAT GTGCACCCCA TTTATCCTCTGCAAG TERM 3909 3160953 - 3160973 + T 93 -12.5 -3.00651 | opp_overlap 3160953 3160949, overlap 3160952 AATAGAAAAAAGAAA GGGGCGCAC TAT GTGCACCCC ATTTATCCTCTGCAA TERM 3910 3160973 - 3160953 - T 100 -14.7 -5.19003 | opp_overlap 3160952 3160953, overlap 3160949 AATAGAAAAAAGAAA GGGGCGCAC TAT GTGCACCCC ATTTATCCTCTGCAA Shewmr4_2654 3161991 - 3161686 - | hypothetical protein Shewmr4_2655 3162622 - 3161984 - | GCN5-related N-acetyltransferase TERM 3911 3162457 - 3162469 + g 78 -4.1 -5.1356 | TCAACTCTTCACGGA TTGCG GCA CGTAA TTTTTGTTCGTAGGC Shewmr4_2656 3162767 - 3163000 + | hypothetical protein TERM 3912 3163011 - 3162994 - T 93 -9.9 -4.3255 | TGTGCAATTAAGAAA GCCCTAA TGGC TTAGGGC TGACACTGAATCACT Shewmr4_2657 3163447 - 3163049 - | hypothetical protein TERM 3913 3163491 - 3163479 - H 80 -6.3 -4.83615 | TACTTGTTATAAAAA TGCTT TAA AAGCA AAATCAATGCCAAAC Shewmr4_2658 3163595 - 3163978 + | hypothetical protein Shewmr4_2659 3163978 - 3164751 + | hypothetical protein Shewmr4_2660 3165504 - 3164854 - | SecY interacting protein Syd queF 3165564 - 3166424 + | 7-cyano-7-deazaguanine reductase TERM 3914 3166442 - 3166459 + T 100 -11.3 -5.62045 | opp_overlap 3166442 AACTTGCAGCAAAAA GCCCTGA GTAA TCAGGGC TTTTTTATTGTCTGT TERM 3915 3166459 - 3166442 - T 100 -11.3 -4.73388 | opp_overlap 3166442 AACTTGCAGCAAAAA GCCCTGA GTAA TCAGGGC TTTTTTATTGTCTGT Shewmr4_2662 3167259 - 3166519 - | SpoOM family protein Shewmr4_2663 3167841 - 3167320 - | putative lipoprotein TERM 3916 3167467 - 3167485 + g 71 -5.8 -4.37658 | CAAACTTTTGGCATA GGCCGCCG CAT CCGCGCCC TTTTGTAACAGGCTT Shewmr4_2664 3169088 - 3168099 - | 4'-phosphopantetheinyl transferase TERM 3917 3168572 - 3168558 - G 91 -7 -5.12707 | CCAAAGGTCAAAAAA GCGCTG CCG CTGCGC ATCCTCGCCATCAAG TERM 3918 3169228 - 3169214 - H 70 -10 -2.51535 | opp_overlap 3169213 3169213 3169227, overlap 3169213 3169211 3169227 TATTTAAACATAGAC CCTGTG CTA CACAGG AGTTTGGCTCCTTTG Shewmr4_2665 3169469 - 3170338 + | transcriptional regulator, putative TERM 3919 3171253 - 3171232 - g 77 -8.7 -4.07687 | gap 1, opp_overlap 3171246 ATGGTCGCCTTAAAA CGC-CTCGAC GAT GCCGAGCGCG ATGGCGACCGTATCT TERM 3920 3176623 - 3176598 - g 70 -4.7 -4.62069 | gap 1, overlap 3176600 GGCTCAGGGTAAAAA TCGCAACGAGCT GAA AGC-CGCTGCCA TTGCACATTTGCAAA Shewmr4_2666 3170335 - 3178308 + | beta-ketoacyl synthase TERM 3921 3178754 - 3178771 + G 76 -8.4 -4.27316 | opp_overlap 3178768 3178769, overlap 3178769 TGCAAATACAGTCGA GCGCTG CGTAAA CAGCGC TTTTAGCTTGGCGAA TERM 3922 3180445 - 3180418 - g 74 -7.1 -4.431 | CACTTATCGATAAAA TCGGCCGC-CAAC TGGA GTTGAGCG-CCGA TGGCGTTCAAACACT Shewmr4_2667 3178413 - 3180719 + | omega-3 polyunsaturated fatty acid synthase PfaB TERM 3923 3181477 - 3181495 + G 77 -8.8 -4.07133 | GATGCTCGCGGGCGC GGTATCGG GCG CCGATCCC TTCTTTATCAACATG TERM 3924 3181873 - 3181891 + G 73 -10.2 -3.22091 | opp_overlap 3181871 TTTCGAAGATAAGCT CGGCGGCA CTA TGGCGCCG TTGATAGGTTCGGCT TERM 3925 3184418 - 3184400 - g 70 -4.4 -4.65933 | GATTTTGAAAACAAA GGCGAGCG CGT CTATCGCC TGCTCGACTGCACCC TERM 3926 3185432 - 3185417 - g 77 -10.4 -3.61517 | opp_overlap 3185409 ATCCTCGCGGAACAA GCGCCA CTGA TGGCGC AAATTCCAGATGTTT Shewmr4_2668 3180728 - 3186673 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ TERM 3927 3188289 - 3188306 + G 70 -8.3 -3.76224 | TACCAGATTTGGGCA GGCCCCG CCCT CGGCGCC TTTAATGCCTGGGCA Shewmr4_2669 3186831 - 3188483 + | 2-nitropropane dioxygenase, NPD TERM 3928 3188507 - 3188532 + F 100 -16.3 -5.1848 | opp_overlap 3188499 3188498 GCTAAATCGTATCGA GCGGGTTAAGT GAAA ACTTAACCCGC TTTTTTACGTTCATT Shewmr4_2670 3188977 - 3189417 + | hypothetical protein TERM 3929 3189698 - 3189681 - f 80 -4.9 -5.23644 | gap 1, opp_overlap 3189684, overlap 3189683 AATTAAAGATAAAAA TGCTGACA GTT TGTC-GCA AAATGTCATTCTTGT TERM 3930 3189684 - 3189706 + F 79 -7.8 -4.32491 | opp_overlap 3189681 3189683 TAAAGATAAAAATGC TGACAGTTTG TCG CAAAATGTCA TTCTTGTTTTTCCCT Shewmr4_2671 3189974 - 3190201 + | hypothetical protein Shewmr4_2672 3190224 - 3190418 + | hypothetical protein TERM 3931 3190493 - 3190532 + F 100 -13.8 -3.65351 | opp_overlap 3190497 3190529, overlap 3190494 ATTGAGTACCTCCGA ACCACTTTATCGTGAC AGCTATTG GTCACGATAAAGTGGG TTTCCCTGAGGCTCG TERM 3932 3190494 - 3190531 + F 100 -17.3 -2.78996 | opp_overlap 3190497 3190529, overlap 3190493 TTGAGTACCTCCGAA CCACTTTATCGTGAC AGCTATTG GTCACGATAAAGTGG GTTTCCCTGAGGCTC TERM 3933 3190528 - 3190497 - f 83 -11.8 -2.7185 | opp_overlap 3190494 3190493 AGTACCTCCGAACCA CTTTATCGTGAC AGCTATTG GTCACGATAAAG TGGGTTTCCCTGAGG Shewmr4_2673 3190573 - 3192270 + | hypothetical protein Shewmr4_2674 3193766 - 3192357 - | sigma-54 dependent trancsriptional regulator TERM 3934 3194425 - 3194400 - g 70 -3.3 -4.89009 | gap 1 ACAGTTAATTAAAAA GGCCAATC-ACC CAA GGTTAATCAGCC AATTGGCCGAGGATA Shewmr4_2675 3194020 - 3194496 + | hypothetical protein TERM 3935 3194512 - 3194542 + F 79 -11.2 -3.07622 | opp_overlap 3194518, overlap 3194518 GGCGGCAATACCATC CAATAACGCGGC CAACTGA GCCGCGTTTTTG TTGCCTGCGATCTAT TERM 3936 3194518 - 3194536 + F 100 -8.8 -5.10461 | opp_overlap 3194518, overlap 3194512 AATACCATCCAATAA CGCGGC CAACTGA GCCGCG TTTTTGTTGCCTGCG TERM 3937 3194536 - 3194518 - f 78 -9.5 -3.70511 | opp_overlap 3194512 3194518 AATACCATCCAATAA CGCGGCC AACTG AGCCGCG TTTTTGTTGCCTGCG Shewmr4_2676 3194769 - 3195317 + | transport-associated TERM 3938 3195420 - 3195393 - T 86 -11.4 -3.3422 | opp_overlap 3195395 3195400, overlap 3195395 3195400 CACTCGGGCAAAAAC CACAAAACCAGC TTCG GCTGGTTTTGTT TTATTGGCGCGATGT TERM 3939 3195395 - 3195418 + T 100 -14 -4.63486 | opp_overlap 3195393 3195395 3195400, overlap 3195400 CTCGGGCAAAAACCA CAAAACCAGC TTCG GCTGGTTTTG TTTTATTGGCGCGAT TERM 3940 3195418 - 3195395 - T 100 -14 -3.23708 | opp_overlap 3195395 3195400, overlap 3195393 3195400 CTCGGGCAAAAACCA CAAAACCAGC TTCG GCTGGTTTTG TTTTATTGGCGCGAT TERM 3941 3195400 - 3195413 + T 100 -8.1 -5.27476 | opp_overlap 3195400 3195395 3195393, overlap 3195395 GCAAAAACCACAAAA CCAGC TTCG GCTGG TTTTGTTTTATTGGC TERM 3942 3195413 - 3195400 - T 86 -8.1 -4.72556 | opp_overlap 3195395 3195400, overlap 3195395 3195393 GCAAAAACCACAAAA CCAGC TTCG GCTGG TTTTGTTTTATTGGC Shewmr4_2677 3195867 - 3195451 - | hypothetical protein TERM 3943 3195960 - 3195939 - R 100 -13.1 -4.44046 | opp_overlap 3195936 GCTAGGTGAAATAAA TACCTCAGC CGCA GCTGAGGTA AAATTAACTTAGCAT Shewmr4_2678 3196840 - 3195992 - | hypothetical protein Shewmr4_2679 3197559 - 3196969 - | phosphoglycerate mutase Shewmr4_2680 3198129 - 3197629 - | hypothetical protein TERM 3944 3198273 - 3198302 + r 100 -11.4 -4.42464 | opp_overlap 3198270 3198273 TAAGTTGGAAAGTTA GCCGAGTGCGAT TCACTC AACGCGCTCGGC TTTATTTAACGGGTT Shewmr4_2681 3199359 - 3198316 - | porin TERM 3945 3199437 - 3199413 - R 77 -6.4 -4.61527 | opp_overlap 3199413 AAAACGCTTTAAAAA GGTCATGACG ATTAA CCCCATGACC TGCTTAGGTTAATCA Shewmr4_2682 3200793 - 3199450 - | major facilitator transporter TERM 3946 3200743 - 3200781 + g 86 -3.3 -5.67063 | overlap 3200736 3200758 3200759 AATTTTTTCGGGCGT TTCGTCCATAATTGGT-CG GTC CGCACCGGTT-TGGAAGAA TTTTTTTATCATAGC TERM 3947 3200942 - 3200919 - H 73 -5.3 -4.6526 | ACAAATTGGCAAAAA CGAGTTAGT TTTGAC ACAAACTCG TCCCTAGAAAGCAAA TERM 3948 3201042 - 3201023 - H 95 -7.2 -5.58209 | overlap 3201025 TCAAACCCAAAAAAA TCGAGTCA AATT TGACTCAA CCACCGCAAAACAAA TERM 3949 3201072 - 3201060 - H 84 -3.5 -5.46706 | ACCGCAAAACAAAAA TTAAA AAT TTTAA AAAATATGCGTGTTG Shewmr4_2683 3201113 - 3202426 + | putative phosphoglycerate transport regulatory protein PgtC TERM 3950 3202474 - 3202500 + G 74 -4.5 -4.81752 | gap 1, opp_overlap 3202474 3202478, overlap 3202474 3202475 TCTTTAGGCGGAAAA T-TAATGCTCGC CTTT GCGAGCATGACA TTTTTAAATCTTTTT TERM 3951 3202495 - 3202478 - g 82 -11.3 -3.67622 | opp_overlap 3202475 3202474 3202474, overlap 3202474 TAGGCGGAAAATTAA TGCTCGC CTTT GCGAGCA TGACATTTTTAAATC TERM 3952 3203528 - 3203540 + G 73 -9.1 -3.76393 | opp_overlap 3203527 3203526 3203528 TTGACCTGAAAAATG TGGCC GAC GGCCA TTTAGATTGGCCTAT TERM 3953 3204622 - 3204646 + G 71 -7.9 -4.10453 | opp_overlap 3204613 GACAATGGGCCAGGA TTTGCGCCAAG TAT TTTGCCGCAAA TTTTCACCCCCTTTA Shewmr4_2684 3202429 - 3204801 + | periplasmic sensor signal transduction histidine kinase TERM 3954 3205038 - 3205062 + G 70 -10.1 -3.1978 | overlap 3205036 ATCCCGAAATCCCAG TCATCATGATC ACT GGTCATGGTGA TATTCCTCTGGCCGT Shewmr4_2685 3204791 - 3206068 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 3955 3206079 - 3206111 + F 100 -19.4 -3.76815 | opp_overlap 3206071 3206074, overlap 3206073 CATAAATCGACTCCC TCGGCTTACTCATC GCTCA GATGAGTAAGCCGA TTTGCGCTTTTCCAT Shewmr4_2686 3206235 - 3206477 + | hypothetical protein Shewmr4_2687 3206992 - 3206486 - | hypothetical protein Shewmr4_2688 3207734 - 3207126 - | cyclic nucleotide-binding protein Shewmr4_2689 3208365 - 3207739 - | fumarylacetoacetate (FAA) hydrolase Shewmr4_2690 3209427 - 3208414 - | succinylglutamate desuccinylase/aspartoacylase TERM 3956 3208850 - 3208833 - G 71 -5.5 -4.52589 | opp_overlap 3208835, overlap 3208835 CCGCCTCATACAAAA TACAGGG AATG CCCTGTT GGTTCGCATAGCCAC TERM 3957 3208848 - 3208835 - G 72 -8.1 -3.87627 | opp_overlap 3208835, overlap 3208833 GCCTCATACAAAATA CAGGG AATG CCCTG TTGGTTCGCATAGCC TERM 3958 3209406 - 3209416 + g 74 -2.4 -5.06451 | TGCCTTCAATTTCAA ACGC TTC GCGC TTTTTTACCATAGTC Shewmr4_2691 3210033 - 3209497 - | MarR family transcriptional regulator TERM 3959 3209685 - 3209697 + g 76 -6.2 -4.64861 | CCTTACTGTGCTCAC GGGC AATCA GCCC TTTATTTTCAAGCCG TERM 3960 3210174 - 3210151 - R 100 -14 -6.00086 | ACAGCATAAAAAAAA CGCCCAATTT ATAA AAATTGGGCG GTTCAGGTATCAAGC Shewmr4_2692 3210773 - 3210210 - | PhnA protein TERM 3961 3210866 - 3210852 - H 75 -7.2 -4.25256 | GCTGGAGCAAAATAA CCATAA ACT TTATGG GACTAAACTTAATTA TERM 3962 3211092 - 3211074 - H 82 -10.2 -3.68024 | GCTGGCAATATAGAA TGCTCGCC CAC GGCGCGCA TAAAAATTAAGGGAT Shewmr4_2693 3211116 - 3211829 + | hypothetical protein TERM 3963 3211846 - 3211865 + T 78 -9.3 -3.70033 | opp_overlap 3211846, overlap 3211841 TTTTGTATTTGAATA GGCCAAG CATTCA CTTGGCC TTATGCTTTTCGGTT TERM 3964 3211865 - 3211846 - T 73 -10 -3.05844 | opp_overlap 3211841 3211846 TTTTGTATTTGAATA GGCCAAGC ATTC ACTTGGCC TTATGCTTTTCGGTT Shewmr4_2694 3212503 - 3211892 - | TetR family transcriptional regulator Shewmr4_2695 3212659 - 3213285 + | glutathione S-transferase domain-containing protein Shewmr4_2696 3213347 - 3214015 + | glutathione S-transferase domain-containing protein TERM 3965 3214072 - 3214053 - f 74 -10 -3.14132 | opp_overlap 3214053 CGTTTTCCCCATCAA GCCCCAAC TCGC ATTGGGGC TTTTTTACTGCTAGT TERM 3966 3214053 - 3214072 + F 100 -9.3 -5.19212 | opp_overlap 3214053 CGTTTTCCCCATCAA GCCCCAA CTCGCA TTGGGGC TTTTTTACTGCTAGT TERM 3967 3215378 - 3215416 + G 85 -11.9 -3.68853 | overlap 3215381 GAAGCTTAGTCTATG CCACTTGCTCATTGTCA CCCGT TGAAAATGAGCAAGTAG TTTCCGCCTTTTTAC TERM 3968 3215381 - 3215413 + G 76 -12.2 -2.93783 | overlap 3215378 GCTTAGTCTATGCCA CTTGCTCATTGTCA CCCGT TGAAAATGAGCAAG TAGTTTCCGCCTTTT Shewmr4_2697 3214192 - 3215565 + | Fmu (Sun) domain-containing protein TERM 3969 3215875 - 3215897 + F 100 -12.1 -4.44608 | opp_overlap 3215874 3215873, overlap 3215870 TTTTTTATCAGAACT TGGCACTCA TATCC TGAGTGCCA TTCTTTTTGCCTCCG Shewmr4_2698 3216129 - 3216293 + | hypothetical protein TERM 3970 3216381 - 3216349 - f 70 -9.2 -2.81118 | opp_overlap 3216350 3216353 3216357, overlap 3216348 3216357 ATAAGTCAGTCAAAT CCGAGCAAGTTGGA TAACC TCCAACTTGCTAGT TAGTCCAAGCGTTTC TERM 3971 3216350 - 3216380 + F 93 -12.7 -3.1506 | opp_overlap 3216349 3216348 3216357, overlap 3216353 3216357 TAAGTCAGTCAAATC CGAGCAAGTTGGA TAACC TCCAACTTGCTAG TTAGTCCAAGCGTTT TERM 3972 3216353 - 3216377 + F 91 -13 -2.77899 | opp_overlap 3216349 3216348 3216357, overlap 3216350 3216357 GTCAGTCAAATCCGA GCAAGTTGGA TAACC TCCAACTTGC TAGTTAGTCCAAGCG TERM 3973 3219564 - 3219549 - g 74 -7.5 -4.27617 | opp_overlap 3219549 GAGATTGGATTAAAA CCGGC CTCAAC GCCGG TTGTGTGGAAGCTGC Shewmr4_2699 3216533 - 3219658 + | hypothetical protein TERM 3974 3219655 - 3219638 - T 72 -7.7 -3.78775 | CCGGCCATTATCAAA GGCGAAA AGGA CTTCGCC TAAATGCCAAGGGGC TERM 3975 3219667 - 3219685 + T 100 -14.6 -5.252 | opp_overlap 3219660 CGCCTAAATGCCAAG GGGCTGCA TTA TGCAGCCC TTTTTTATCCAACTA Shewmr4_2700 3221430 - 3219763 - | diguanylate cyclase TERM 3976 3221234 - 3221222 - G 73 -9.1 -3.70109 | GACACCATCCAATAA TCGCC CCC GGCGA GACTTACCGAACTGG TERM 3977 3222236 - 3222246 + G 72 -8.2 -3.88698 | overlap 3222234 CGCGCAAGTTGGTTT GGCC TTA GGCC TGTTTTATATCGGTA Shewmr4_2701 3221628 - 3222479 + | hypothetical protein TERM 3978 3222466 - 3222490 + T 90 -11.4 -3.60296 | opp_overlap 3222466, overlap 3222484 AAGCCAAATGGAAAA GCCGGCGAAG TTAAC CTTGGCCGGC TTTGACATCAAAGTG TERM 3979 3222490 - 3222466 - T 100 -11.4 -4.37198 | opp_overlap 3222466 3222484 AAGCCAAATGGAAAA GCCGGCGAAG TTAAC CTTGGCCGGC TTTGACATCAAAGTG TERM 3980 3222522 - 3222503 - T 84 -10 -3.83026 | opp_overlap 3222484 GGCTTTGACATCAAA GTGGCCTC TGTT AAGGCCAC TCACAATAAGGCGAG Shewmr4_2702 3223078 - 3222539 - | YfaZ family protein TERM 3981 3223156 - 3223140 - R 89 -3.7 -5.64328 | AATAAAAAAAGAAAA TCTGC ATATTTA GCAGA GAGTCGCAAAGATTT Shewmr4_2703 3223751 - 3223242 - | GCN5-related N-acetyltransferase TERM 3982 3223692 - 3223713 + g 91 -13 -4.07568 | opp_overlap 3223687, overlap 3223687 ATCGATTAATGCCGC CGCAGCCG CTAATT CGGCTGCG TTTTGGCAAAGGACA Shewmr4_2704 3225150 - 3223780 - | MgtE intracellular region Shewmr4_2705 3225298 - 3225783 + | glutathione peroxidase TERM 3983 3225965 - 3225982 + T 100 -11.3 -5.77988 | opp_overlap 3225957 AGGAATAGGTCACTA GGCAACC AATT GGTTGCC TTTTTTTATGTCTAT TERM 3984 3226348 - 3226366 + T 100 -13.2 -5.72616 | ACTTTGATTCTTTTA TGGCAACC TTA GGTTGCCA TTTTTTTATCTGAAT Shewmr4_2706 3228200 - 3226383 - | peptidase M1, membrane alanine aminopeptidase TERM 3985 3228555 - 3228572 + r 100 -9.9 -5.60993 | opp_overlap 3228553 GAATTGGAATTTACA GCAACCT TATT AGGTTGC TTTTTTTATGCCCAC TERM 3986 3228629 - 3228646 + r 95 -12.7 -3.32769 | opp_overlap 3228629, overlap 3228622 TTCCCAAAACAAAAA GGGCCTC CGAA GAGGCCC TTAATGGTTTAGCGA TERM 3987 3228646 - 3228629 - R 100 -12.7 -5.45802 | opp_overlap 3228622 3228629 TTCCCAAAACAAAAA GGGCCTC CGAA GAGGCCC TTAATGGTTTAGCGA Shewmr4_2707 3229640 - 3228669 - | phosphate binding protein TERM 3988 3229835 - 3229809 - R 100 -11.7 -4.88736 | opp_overlap 3229814, overlap 3229814 CAGTACTGATAAAAA CAAAACAGGCC CTAAT GGCCTGTTTTA AATATAAAAATAAAT TERM 3989 3229830 - 3229814 - R 100 -9.4 -5.35224 | opp_overlap 3229814, overlap 3229809 CTGATAAAAACAAAA CAGGCC CTAAT GGCCTG TTTTAAATATAAAAA TERM 3990 3229814 - 3229830 + r 85 -9.4 -4.2349 | opp_overlap 3229814 3229809 CTGATAAAAACAAAA CAGGCC CTAAT GGCCTG TTTTAAATATAAAAA Shewmr4_2708 3231165 - 3229867 - | PAS/PAC sensor signal transduction histidine kinase TERM 3991 3231228 - 3231199 - R 83 -11.5 -2.90309 | opp_overlap 3231198 3231194 3231191 3231199, overlap 3231194 GGCTAAATAAGAGGA GCACAAGATAGCT TAAA AGCTAACCTGTGC CTATCTCTTATTTGG Shewmr4_2709 3231935 - 3231246 - | two component transcriptional regulator TERM 3992 3232082 - 3232097 + r 78 -10.4 -3.35867 | opp_overlap 3232082 TATCGCAATAAAAAA GGAGGC CTAA GCCTCC TTAATTCAACCTTAA TERM 3993 3232097 - 3232082 - R 100 -10.4 -5.46657 | opp_overlap 3232082 TATCGCAATAAAAAA GGAGGC CTAA GCCTCC TTAATTCAACCTTAA Shewmr4_2710 3233065 - 3232121 - | porin TERM 3994 3234137 - 3234108 - g 71 -6.5 -4.14243 | opp_overlap 3234117, overlap 3234117 GACGCCAGCGTAAAA CGCTTAAAATTCT CCGA AGAATTTAGAGCG GGTAATGATGAGCTA rdgC 3233358 - 3234272 + | recombination associated protein TERM 3995 3234405 - 3234356 - T 100 -13.7 -4.17906 | gap 1, opp_overlap 3234364, overlap 3234364 AATCAAACGAAATAA TGTATAAAGGCGCCGCAGTTGAAC TTA GCTC-ACTGCGGCGCCTTTTTAGT ATCTATGACTGAAGT TERM 3996 3234397 - 3234364 - T 100 -19.7 -4.0386 | gap 1, opp_overlap 3234364, overlap 3234356 GAAATAATGTATAAA GGCGCCGCAGTTGAAC TTA GCTC-ACTGCGGCGCC TTTTTAGTATCTATG TERM 3997 3234364 - 3234397 + T 100 -17.5 -4.86133 | gap 1, opp_overlap 3234364 3234356 GAAATAATGTATAAA GGCGCCGCAGTTGAAC TTA GCTCA-CTGCGGCGCC TTTTTAGTATCTATG Shewmr4_2712 3236311 - 3234500 - | peptidase M61 domain-containing protein TERM 3998 3234558 - 3234571 + g 70 -3.1 -4.81685 | TCAATGCCAAGCCAG GCTTT GAAG AAGGC TTTTTGCTGCTTAGT TERM 3999 3236194 - 3236210 + g 72 -9.5 -3.34062 | opp_overlap 3236191, overlap 3236191 CGGAGAAAGTCACAC TCACCTT CGC AAGGTGA TGTTCTGGTTGGCTT Shewmr4_2713 3236452 - 3238614 + | TPR repeat-containing protein Shewmr4_2714 3238765 - 3240321 + | diguanylate cyclase TERM 4000 3240463 - 3240451 - g 100 -6.9 -5.40474 | ATCGCCTCAAAAAAA GCGCC AAG AGCGC CCTATATCAACTGTA Shewmr4_2715 3240378 - 3241733 + | hypothetical protein TERM 4001 3241807 - 3241784 - g 73 -12.4 -2.52676 | overlap 3241767 GATGGTCTCAACTTA GTTCGCCGCA TTTA TGCGGCGATC CCAGATGAGAACGAT xni 3241748 - 3242530 + | exonuclease IX Shewmr4_2717 3242641 - 3243069 + | hypothetical protein TERM 4002 3243800 - 3243830 + F 72 -9.9 -2.80821 | gap 1, opp_overlap 3243809, overlap 3243809 ATTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTGTATTTGGCAG TERM 4003 3243809 - 3243820 + F 81 -7.2 -4.60487 | opp_overlap 3243809, overlap 3243800 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 4004 3243820 - 3243809 - f 73 -7.2 -4.09511 | opp_overlap 3243800 3243809 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG Shewmr4_2718 3244417 - 3245454 + | serine/threonine protein kinase TERM 4005 3245530 - 3245489 - T 84 -6.1 -4.92314 | gap 1, opp_overlap 3245489 3245507, overlap 3245502 ATCAATTGACAAAAA TATATGTCACGA-ATTTTGG TTC CCAAAATATAGCGCCATATA TTTTTGCAACTGTTC TERM 4006 3246123 - 3246106 - T 100 -12.7 -5.61596 | opp_overlap 3246106 ATTGTCATAAAAAAA CGCCACC TTTC GGTGGCG TTTTTATAGATAAAC TERM 4007 3246106 - 3246123 + T 100 -12.7 -4.87665 | opp_overlap 3246106 ATTGTCATAAAAAAA CGCCACC TTTC GGTGGCG TTTTTATAGATAAAC Shewmr4_2719 3248968 - 3246152 - | peptidase S9 prolyl oligopeptidase Shewmr4_2720 3249223 - 3250233 + | isocitrate dehydrogenase TERM 4008 3250278 - 3250249 - T 100 -12.3 -3.53012 | opp_overlap 3250256, overlap 3250256 TCGCTCTGCGCGAAA CAAAAAACGCACC TAGG GGTGCGTTTTTTT ATGGCCGCTATATAG TERM 4009 3250271 - 3250256 - T 100 -10.4 -5.63517 | opp_overlap 3250256, overlap 3250249 GCGCGAAACAAAAAA CGCACC TAGG GGTGCG TTTTTTTATGGCCGC TERM 4010 3250256 - 3250271 + T 100 -10.4 -5.60993 | opp_overlap 3250249 3250256 GCGCGAAACAAAAAA CGCACC TAGG GGTGCG TTTTTTTATGGCCGC TERM 4011 3250333 - 3250313 - T 100 -9.7 -5.31519 | opp_overlap 3250313 ACAGCCAAACAAAAA GCCCCAAAC ATC ACTTGGGGC TTCACTCACGAAAAG TERM 4012 3250400 - 3250361 - T 80 -5 -5.11937 | gap 1, opp_overlap 3250374, overlap 3250351 AAGAACGGTAAAAAA CCGCTGATTAGTTCCAAGC CTG GCTCGGT-CTAATCCACAG GTGAACAGTCACTTC Shewmr4_2721 3251453 - 3250368 - | putative RNA 2'-O-ribose methyltransferase TERM 4013 3251568 - 3251519 - R 100 -13.2 -3.29471 | gap 1, opp_overlap 3251527 3251529 3251534, overlap 3251527 3251529 3251534 GCGCCAGTATAGCAA TTTCAAT-ACACAAAAGCCCGAT TTGCT ATCGGGCTTTTGTGTGATTGGCA GGGAGAACCAATGGC TERM 4014 3251559 - 3251527 - R 100 -19.4 -3.10732 | opp_overlap 3251527 3251529 3251534, overlap 3251519 3251529 3251534 ATAGCAATTTCAATA CACAAAAGCCCGAT TTGCT ATCGGGCTTTTGTG TGATTGGCAGGGAGA TERM 4015 3251527 - 3251559 + r 100 -19.4 -2.70932 | opp_overlap 3251519 3251527 3251529 3251534, overlap 3251529 3251534 ATAGCAATTTCAATA CACAAAAGCCCGAT TTGCT ATCGGGCTTTTGTG TGATTGGCAGGGAGA TERM 4016 3251529 - 3251557 + r 100 -16.2 -2.90075 | opp_overlap 3251527 3251519 3251529 3251534, overlap 3251527 3251534 AGCAATTTCAATACA CAAAAGCCCGAT TTGCT ATCGGGCTTTTG TGTGATTGGCAGGGA TERM 4017 3251557 - 3251529 - R 100 -16.2 -3.10879 | opp_overlap 3251529 3251527 3251534, overlap 3251527 3251519 3251534 AGCAATTTCAATACA CAAAAGCCCGAT TTGCT ATCGGGCTTTTG TGTGATTGGCAGGGA TERM 4018 3251534 - 3251552 + r 100 -10.3 -4.614 | opp_overlap 3251529 3251527 3251519 3251534, overlap 3251529 3251527 TTTCAATACACAAAA GCCCGAT TTGCT ATCGGGC TTTTGTGTGATTGGC TERM 4019 3251552 - 3251534 - R 100 -10.3 -4.67943 | opp_overlap 3251534 3251529 3251527, overlap 3251529 3251527 3251519 TTTCAATACACAAAA GCCCGAT TTGCT ATCGGGC TTTTGTGTGATTGGC Shewmr4_2722 3251999 - 3251607 - | hypothetical protein TERM 4020 3251975 - 3251961 - G 73 -2.7 -5.0538 | overlap 3251962 CGCGACCGCAAAAAA TCCGC TTACT GCGGC GAGTAACAACAATCC TERM 4021 3252037 - 3252062 + r 80 -10.4 -3.54459 | opp_overlap 3252035 3252038, overlap 3252038 GCTTTACGACAGACG ACGCTCAGGC TGTAAC GCCTGAGCGC TTTAGGCCACATTAA TERM 4022 3252038 - 3252061 + r 95 -13.9 -2.72461 | opp_overlap 3252038 3252035, overlap 3252037 CTTTACGACAGACGA CGCTCAGGC TGTAAC GCCTGAGCG CTTTAGGCCACATTA TERM 4023 3252061 - 3252038 - R 95 -13.9 -2.71268 | opp_overlap 3252037 3252038, overlap 3252035 CTTTACGACAGACGA CGCTCAGGC TGTAAC GCCTGAGCG CTTTAGGCCACATTA Shewmr4_2723 3252758 - 3252087 - | hypothetical protein TERM 4024 3252512 - 3252531 + g 70 -4.9 -4.62069 | GGGCAAGCAACTTTG GCGCTCT GTCAGG GGGGCGC TTTTTACCATCCACG Shewmr4_2724 3253650 - 3252739 - | DNA-binding transcriptional activator GcvA TERM 4025 3252959 - 3252935 - G 77 -11.4 -3.34043 | GCGAGTACGCTATAA CCCAAGGCCA CACCT TGGCCGTGGG CCGCCGCCTGCAAAA TERM 4026 3253644 - 3253667 + g 70 -2.5 -4.97312 | GTGGTGGTAAGCGTC TTGACATAG TGATCT CTATCTCAA TTTTTAATTAGTTTT Shewmr4_2725 3253827 - 3254060 + | hypothetical protein TERM 4027 3254110 - 3254083 - T 100 -11.4 -4.30576 | opp_overlap 3254088, overlap 3254088 TGCTGAGCAGTAAAA TAAAAGCCGCAT TCCA ATGCGGCTTTTT TGTATTCGTTTACCT TERM 4028 3254105 - 3254088 - T 100 -11.3 -5.14626 | opp_overlap 3254088, overlap 3254083 AGCAGTAAAATAAAA GCCGCAT TCCA ATGCGGC TTTTTTGTATTCGTT TERM 4029 3254088 - 3254105 + T 100 -11.3 -5.50925 | opp_overlap 3254088 3254083 AGCAGTAAAATAAAA GCCGCAT TCCA ATGCGGC TTTTTTGTATTCGTT Shewmr4_2726 3255666 - 3254212 - | thiamine biosynthesis protein ThiI TERM 4030 3255831 - 3255851 + r 82 -6.8 -4.85599 | opp_overlap 3255832, overlap 3255832 AATCACAAATAAAAA AGCCGTGA GCAAG TCACGGCG TTTTTATCGAATCAC TERM 4031 3255832 - 3255850 + r 80 -10.3 -3.50877 | opp_overlap 3255832, overlap 3255831 ATCACAAATAAAAAA GCCGTGA GCAAG TCACGGC GTTTTTATCGAATCA TERM 4032 3255850 - 3255832 - R 100 -10.3 -5.73978 | opp_overlap 3255831 3255832 ATCACAAATAAAAAA GCCGTGA GCAAG TCACGGC GTTTTTATCGAATCA motB 3256803 - 3255883 - | flagellar motor protein MotB Shewmr4_2728 3257574 - 3256807 - | flagellar motor protein PomA Shewmr4_2729 3257890 - 3258129 + | exodeoxyribonuclease VII small subunit Shewmr4_2730 3258132 - 3259013 + | farnesyl-diphosphate synthase TERM 4033 3259156 - 3259180 + G 74 -7.8 -4.23758 | overlap 3259157 GGGAGTTTCTTCTTA AGTCCGTTGG CATGT CCAGCGGACA TTTTGCCTCTGGACT TERM 4034 3259157 - 3259179 + G 74 -11.3 -3.13773 | overlap 3259156 GGAGTTTCTTCTTAA GTCCGTTGG CATGT CCAGCGGAC ATTTTGCCTCTGGAC TERM 4035 3259474 - 3259507 + G 70 -10.4 -2.9155 | opp_overlap 3259471 CTGGACGCAAAGTGG TCG-CCGTCATTGGCG ATGG CGCCA-TGACGGGCGG TATGGTGTTCGAGGC TERM 4036 3260727 - 3260714 - g 73 -5.2 -4.66987 | GACAGTGGAAGAAAA CGCC ATTATG GGCG GCGCGGGCTCTGGTG Shewmr4_2731 3259035 - 3260903 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 4037 3261026 - 3260974 - T 100 -11.6 -4.79451 | gap 1, opp_overlap 3260986 3260992, overlap 3260982 3260986 3260992 3261024 ACGGCAAATAGAAAA GCAACAGACAAATAAAAAGGACTGC ATCG GCAGTCCTTTTTATTAGT-TAACGC TTAACGCTCAGCGCG TERM 4038 3261019 - 3260982 - T 100 -17.3 -3.28784 | opp_overlap 3260986 3260992, overlap 3260974 3260986 3260992 TAGAAAAGCAACAGA CAAATAAAAAGGACTGC ATCG GCAGTCCTTTTTATTAG TTAACGCTTAACGCT TERM 4039 3261015 - 3260986 - T 100 -16.7 -4.25437 | opp_overlap 3260986 3260992, overlap 3260982 3260974 3260992 AAAGCAACAGACAAA TAAAAAGGACTGC ATCG GCAGTCCTTTTTA TTAGTTAACGCTTAA TERM 4040 3260986 - 3261015 + T 100 -16.7 -3.35867 | opp_overlap 3260986 3260982 3260974 3260992, overlap 3260992 AAAGCAACAGACAAA TAAAAAGGACTGC ATCG GCAGTCCTTTTTA TTAGTTAACGCTTAA TERM 4041 3261009 - 3260992 - T 100 -11.3 -5.4433 | opp_overlap 3260992 3260986, overlap 3260986 3260982 3260974 ACAGACAAATAAAAA GGACTGC ATCG GCAGTCC TTTTTATTAGTTAAC TERM 4042 3260992 - 3261009 + T 100 -11.3 -5.1963 | opp_overlap 3260986 3260982 3260974 3260992, overlap 3260986 ACAGACAAATAAAAA GGACTGC ATCG GCAGTCC TTTTTATTAGTTAAC Shewmr4_2732 3261658 - 3261047 - | GrpE protein TERM 4043 3261383 - 3261394 + g 70 -4.4 -4.62069 | opp_overlap 3261383 TAACACTGGCAGTAA TTCG TTGG CGAA TTTTTCCAATGCAAA TERM 4044 3262036 - 3262050 + G 73 -3.4 -5.03747 | CGTGATAGGTGTTAA CCGTGG CAA TCTCGG TTTTTTAACGGATTT Shewmr4_2733 3261707 - 3262636 + | NAD(+) kinase TERM 4045 3263498 - 3263516 + G 95 -11.7 -4.42062 | opp_overlap 3263496 TATATCCATGATAGT CACGGCG CTCGC CGCCGTG TTTATTTGGCAGATG Shewmr4_2734 3263388 - 3265034 + | L-lactate permease TERM 4046 3265044 - 3265073 + F 77 -6.3 -4.66833 | opp_overlap 3265046 3265047, overlap 3265047 3265051 TTCTAAGCCAAATGA AACCTAAGGCCGC GCTG GCGGCCTTAGTCA TTTTTAGCGTTGAGA TERM 4047 3265071 - 3265046 - f 100 -13.3 -4.10672 | opp_overlap 3265044 3265047 3265051, overlap 3265047 CTAAGCCAAATGAAA CCTAAGGCCGC GCTG GCGGCCTTAGT CATTTTTAGCGTTGA TERM 4048 3265070 - 3265047 - f 100 -16.8 -3.0568 | opp_overlap 3265044 3265047 3265051, overlap 3265046 TAAGCCAAATGAAAC CTAAGGCCGC GCTG GCGGCCTTAG TCATTTTTAGCGTTG TERM 4049 3265047 - 3265070 + F 100 -16.8 -3.26237 | opp_overlap 3265047 3265046, overlap 3265044 3265051 TAAGCCAAATGAAAC CTAAGGCCGC GCTG GCGGCCTTAG TCATTTTTAGCGTTG TERM 4050 3265051 - 3265066 + F 91 -11.8 -3.4158 | opp_overlap 3265047 3265046, overlap 3265047 3265044 CCAAATGAAACCTAA GGCCGC GCTG GCGGCC TTAGTCATTTTTAGC TERM 4051 3265494 - 3265525 + G 72 -10 -3.37198 | opp_overlap 3265485 3265484, overlap 3265484 3265493 AAAATCGGTCCCGAT CCGGCGACCCTTGC CTCA GCCATGGTCGGCGG TATTGTGTCTAACAA TERM 4052 3267017 - 3266994 - g 70 -3.2 -4.75372 | gap 1, opp_overlap 3266994 ACCACTGAGCAAAAA GTGTT-GGATT TCC AAGCCAAACAC TTTGGCGCCGTCAAC Shewmr4_2735 3265098 - 3267902 + | FAD linked oxidase domain-containing protein TERM 4053 3267941 - 3267908 - f 100 -12.5 -5.41143 | opp_overlap 3267915 3267936, overlap 3267909 3267915 CAGCCGCTAAAAAAA TGCAAAACGGGGCTA GAAA TAGCCCCGTTTTTCG TTAGAAGAAAACTAT TERM 4054 3267940 - 3267909 - f 100 -16 -3.83963 | opp_overlap 3267915 3267936, overlap 3267908 3267915 AGCCGCTAAAAAAAT GCAAAACGGGGCTA GAAA TAGCCCCGTTTTTC GTTAGAAGAAAACTA TERM 4055 3267915 - 3267934 + F 100 -13.6 -4.8622 | opp_overlap 3267909 3267908 3267915 TAAAAAAATGCAAAA CGGGGCTA GAAA TAGCCCCG TTTTTCGTTAGAAGA TERM 4056 3267934 - 3267915 - f 100 -13.6 -4.57275 | opp_overlap 3267915, overlap 3267909 3267908 TAAAAAAATGCAAAA CGGGGCTA GAAA TAGCCCCG TTTTTCGTTAGAAGA Shewmr4_2736 3268204 - 3268947 + | hypothetical protein TERM 4057 3269479 - 3269459 - g 100 -10.5 -5.22312 | opp_overlap 3269462 ATCCACATGAAAAAA GAAGAAGTC GGT GACCTCTTC CATGAGAAACTTGGC Shewmr4_2737 3268958 - 3270352 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shewmr4_2738 3270354 - 3270923 + | hypothetical protein TERM 4058 3270949 - 3270967 + T 100 -9.5 -5.08601 | opp_overlap 3270944 3270949 GTTAAACCTACAAAA GCCGCCT TTAAT GGGCGGC TTTTTATTAGAATAA TERM 4059 3270967 - 3270949 - T 93 -8.8 -4.51196 | opp_overlap 3270949, overlap 3270944 GTTAAACCTACAAAA GCCGCC TTTAATG GGCGGC TTTTTATTAGAATAA Shewmr4_2739 3271548 - 3271195 - | hypothetical protein Shewmr4_2740 3272162 - 3271695 - | hypothetical protein Shewmr4_2741 3273063 - 3274172 + | hypothetical protein TERM 4060 3275611 - 3275601 - g 79 -5.4 -4.99638 | AGAGGTAGATAAAAA GCTT CGT AAGC GTGATGAATGGCTGC Shewmr4_2742 3274162 - 3275715 + | RND efflux system outer membrane lipoprotein TERM 4061 3276295 - 3276276 - g 70 -10 -3.27476 | gap 1 ACTCTCAACTATTAA GTGC-CCGC TCG GCGGTGCAC AAAGCCGAGCGCGAT TERM 4062 3276597 - 3276574 - g 70 -4.4 -4.63928 | overlap 3276577 AGACGATGGTAAAAA GCAGGCGGTG GGTT CACTGCCAAC GGTCAGCAATAGCCG Shewmr4_2743 3275708 - 3276802 + | secretion protein HlyD family protein TERM 4063 3277339 - 3277325 - g 71 -11.4 -2.80946 | opp_overlap 3277324 3277323, overlap 3277324 AACACCCCAAAAGAC TGGCGC TAC GCGCCA CGATTATTGTCATCC Shewmr4_2744 3276811 - 3277836 + | hypothetical protein Shewmr4_2745 3277838 - 3278254 + | Ion transport 2 domain-containing protein TERM 4064 3278361 - 3278334 - T 100 -9.2 -5.31877 | gap 1, opp_overlap 3278334, overlap 3278320 AGCGACCATAAAAAA TGGCAGCGTATAG ATA CC-CACGCTGCCA TTTTCGATTGATACC TERM 4065 3278334 - 3278361 + T 82 -8.5 -4.30014 | opp_overlap 3278320 3278334 AGCGACCATAAAAAA TGGCAGCGT ATAGATACCC ACGCTGCCA TTTTCGATTGATACC Shewmr4_2746 3279991 - 3278480 - | hypothetical protein TERM 4066 3279259 - 3279282 + g 73 -5.4 -4.72029 | gap 1, overlap 3279262 ATACCGACCTAAAGG TGTTATAACCC AAT GGGTTA-GACA TTTTATTACGTTCAG TERM 4067 3279659 - 3279670 + g 71 -5.8 -4.30576 | CGCCACATGCTGCCA CTGG GCAT CCAG TTTTAATACTGGCGA Shewmr4_2747 3281572 - 3280220 - | multi anti extrusion protein MatE TERM 4068 3281806 - 3281832 + H 80 -3.8 -5.32699 | overlap 3281807 CACTTAATAACAGAT GTGGTGAAAG TCATCAT TTTTCACTAC TTTTTTGGTATTTAA TERM 4069 3281807 - 3281821 + H 71 -5 -4.7329 | overlap 3281806 ACTTAATAACAGATG TGGTGA AAG TCATCA TTTTTCACTACTTTT TERM 4070 3282179 - 3282162 - g 70 -9.1 -3.63627 | gap 1 GGCTTATACGCCAAA GCCC-CCG AGT CGGCGGGC GGTCTGGGGATCAGC Shewmr4_2748 3281991 - 3283535 + | major facilitator transporter TERM 4071 3283650 - 3283631 - T 95 -7.9 -5.03314 | opp_overlap 3283631 GTGAGTCCTAAAAAA GTGAGTG TACATG CACTCAC TTTTTTATTGGATGT TERM 4072 3283631 - 3283650 + T 100 -8.6 -5.49234 | opp_overlap 3283631 GTGAGTCCTAAAAAA GTGAGTGT ACAT GCACTCAC TTTTTTATTGGATGT Shewmr4_2749 3284200 - 3283679 - | hypothetical protein Shewmr4_2750 3284538 - 3285314 + | ABC transporter, periplasmic substrate-binding protein, putative Shewmr4_2751 3286511 - 3285393 - | cobalamin synthesis protein, P47K TERM 4073 3286590 - 3286574 - R 100 -15.1 -5.11112 | AAAGCTCAACAAAAA GCGCGCC TTA GGCGCGC TGATGAATGGATAAA Shewmr4_2752 3288005 - 3286620 - | DEAD/DEAH box helicase domain-containing protein Shewmr4_2753 3291230 - 3288201 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shewmr4_2754 3292930 - 3291341 - | starch synthase Shewmr4_2755 3294260 - 3292998 - | glucose-1-phosphate adenylyltransferase Shewmr4_2756 3296892 - 3294379 - | glycogen/starch/alpha-glucan phosphorylases TERM 4074 3294879 - 3294916 + g 77 -10.5 -3.50853 | AGATTTGTTCGGAGA CGTCGGTGCCGGGGCAG ATTT TTTCCATGGCACTGACG TTGTAATTCGGCAGA TERM 4075 3296581 - 3296560 - G 70 -9.5 -3.31853 | overlap 3296563 TAAATCTAAATTTAA CAAGGCATT ACCT AATGCCCTG CCCATGAGAAACTCC TERM 4076 3296823 - 3296838 + g 80 -2.5 -5.40072 | gap 1 TTGGCTGACTCGGCG CG-GCC TTAGT GGCACG TTTTTTTGGGGGAAC Shewmr4_2757 3299153 - 3296895 - | glycogen debranching enzyme GlgX TERM 4077 3298462 - 3298449 - G 85 -3.8 -5.40072 | GGGCTCGGAAAAAAA TGCC TGAACC GGCA GTAACTCGACGCAAT TERM 4078 3298697 - 3298679 - G 79 -6.6 -4.72986 | opp_overlap 3298679, overlap 3298681 TAGCGGCATCAAAAA GGGGCCGA GTA TCGACCAC TTTGCACTTAGGTAC Shewmr4_2758 3301387 - 3299150 - | glycogen branching enzyme TERM 4079 3299869 - 3299894 + g 71 -10.5 -3.14344 | gap 1, overlap 3299871 3299873 GGCGATAGATGGGAT CG-CGGCCTAAG TAG CTTAGGCTGTCG TTCATCCAGCCCATA TERM 4080 3299871 - 3299891 + g 74 -11.9 -2.77899 | overlap 3299869 3299873 CGATAGATGGGATCG CGGCCTAAG TAG CTTAGGCTG TCGTTCATCCAGCCC TERM 4081 3299873 - 3299889 + g 70 -10.9 -2.93723 | overlap 3299871 3299869 ATAGATGGGATCGCG GCCTAAG TAG CTTAGGC TGTCGTTCATCCAGC TERM 4082 3300766 - 3300782 + g 74 -7.9 -4.25104 | CCATAGGGTCGGATT TGGCGTG GCG CTCGCCA TTTTGATAAACCAAA TERM 4083 3301143 - 3301133 - G 76 -4.6 -4.9792 | overlap 3301135 TAGCGCATACAAAAA GGGC TTA ACCC GTCTGCCAAGCGTGC TERM 4084 3301294 - 3301257 - G 70 -2.6 -5.00616 | overlap 3301260 GCGTTGCGTAAAAAA CAGCGCACCACCAAGG CCTTAC CCTCGTTGATGCTGTG CATACCAAGCAGGGA Shewmr4_2759 3303795 - 3301405 - | 4-alpha-glucanotransferase TERM 4085 3304675 - 3304656 - g 73 -5.6 -4.72272 | overlap 3304632 3304657 3304660 CGCGCCGATTAAAAA CGAGGCCG CTGT CGGCATCA GTAACAAACGGGGCA Shewmr4_2760 3304309 - 3304944 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 4086 3304963 - 3304996 + T 89 -11.9 -3.25539 | opp_overlap 3304964 3304971, overlap 3304964 3304971 AACTCTCTAGCTAAA ACTGAAAAGCACTGA ATAT TCAGTGCTTTTTAGG TATTAATTAGCATTA TERM 4087 3304964 - 3304995 + T 100 -15.4 -2.54841 | opp_overlap 3304964 3304971, overlap 3304963 3304971 ACTCTCTAGCTAAAA CTGAAAAGCACTGA ATAT TCAGTGCTTTTTAG GTATTAATTAGCATT TERM 4088 3304995 - 3304964 - T 100 -13.2 -4.18197 | opp_overlap 3304964 3304963 3304971, overlap 3304971 ACTCTCTAGCTAAAA CTGAAAAGCACTGA ATAT TCAGTGCTTTTTAG GTATTAATTAGCATT TERM 4089 3304971 - 3304988 + T 100 -9.9 -4.75308 | opp_overlap 3304964 3304971, overlap 3304964 3304963 AGCTAAAACTGAAAA GCACTGA ATAT TCAGTGC TTTTTAGGTATTAAT TERM 4090 3304988 - 3304971 - T 100 -9.9 -4.43272 | opp_overlap 3304971 3304964 3304963, overlap 3304964 AGCTAAAACTGAAAA GCACTGA ATAT TCAGTGC TTTTTAGGTATTAAT Shewmr4_2761 3305514 - 3305017 - | MarR family transcriptional regulator Shewmr4_2762 3305821 - 3306969 + | iron-containing alcohol dehydrogenase TERM 4091 3307094 - 3307058 - f 91 -13.2 -2.70708 | gap 1, opp_overlap 3307063, overlap 3307061 3307062 3307071 AAGCTAACGACATGA GAATCGGCCCAAACAAG GGAG CTTGTTTGGGCCT-TTC TTTTGGGCTGAACCA TERM 4092 3307092 - 3307061 - f 89 -11.6 -3.49858 | opp_overlap 3307063, overlap 3307058 3307062 3307071 CTAACGACATGAGAA TCGGCCCAAACAAG GGAG CTTGTTTGGGCCTT TCTTTTGGGCTGAAC TERM 4093 3307091 - 3307062 - f 100 -15.1 -2.69433 | opp_overlap 3307063, overlap 3307061 3307058 3307071 TAACGACATGAGAAT CGGCCCAAACAAG GGAG CTTGTTTGGGCCT TTCTTTTGGGCTGAA TERM 4094 3307063 - 3307090 + F 100 -18.6 -4.67048 | opp_overlap 3307062 3307061 3307058 3307071 AACGACATGAGAATC GGCCCAAACAAG GGAG CTTGTTTGGGCC TTTCTTTTGGGCTGA TERM 4095 3307168 - 3307142 - f 73 -2.9 -5.1925 | opp_overlap 3307144 CCATAATGTAAAAAA CCGCCGTAG CGCCTTAAT CTTCGGCAG TTGGGATCCCATAGA TERM 4096 3307292 - 3307329 + F 100 -12.7 -4.08216 | opp_overlap 3307290 3307289 3307293, overlap 3307293 3307296 GCAAAAGATGAAGCC AGCTCAGAGGCCCATTC TAAG GAATGGGCCTCTGTCCC TTTTAGCGCCCGTCC TERM 4097 3307293 - 3307328 + F 100 -16.2 -3.04715 | opp_overlap 3307290 3307289 3307293, overlap 3307292 3307296 CAAAAGATGAAGCCA GCTCAGAGGCCCATTC TAAG GAATGGGCCTCTGTCC CTTTTAGCGCCCGTC TERM 4098 3307328 - 3307293 - f 100 -16.2 -2.63041 | opp_overlap 3307293 3307292 3307296, overlap 3307290 3307289 CAAAAGATGAAGCCA GCTCAGAGGCCCATTC TAAG GAATGGGCCTCTGTCC CTTTTAGCGCCCGTC TERM 4099 3307296 - 3307325 + F 100 -20.9 -2.74605 | opp_overlap 3307293 3307290 3307289, overlap 3307293 3307292 AAGATGAAGCCAGCT CAGAGGCCCATTC TAAG GAATGGGCCTCTG TCCCTTTTAGCGCCC Shewmr4_2763 3307661 - 3308035 + | hypothetical protein TERM 4100 3308095 - 3308116 + F 100 -13.1 -5.13722 | opp_overlap 3308095 GTGAAATAGCAACAA TGCCAGAGT TAAT ACTCTGGCA TTTTGTTTTACTGAC TERM 4101 3308116 - 3308095 - f 100 -13.1 -3.8613 | opp_overlap 3308095 GTGAAATAGCAACAA TGCCAGAGT TAAT ACTCTGGCA TTTTGTTTTACTGAC Shewmr4_2764 3308351 - 3308563 + | hypothetical protein TERM 4102 3308583 - 3308554 - T 79 -10.7 -3.11118 | opp_overlap 3308555 3308556 3308558, overlap 3308552 AGAACTGACTGAAGA TTCAGAGTGACGC CCAT GCGTCACTCTGCT TTATCGGGGCTCAAT TERM 4103 3308555 - 3308582 + T 100 -14.2 -3.86897 | opp_overlap 3308554 3308552, overlap 3308556 3308558 GAACTGACTGAAGAT TCAGAGTGACGC CCAT GCGTCACTCTGC TTTATCGGGGCTCAA TERM 4104 3308556 - 3308581 + T 100 -17.7 -2.91924 | opp_overlap 3308554 3308552, overlap 3308555 3308558 AACTGACTGAAGATT CAGAGTGACGC CCAT GCGTCACTCTG CTTTATCGGGGCTCA TERM 4105 3308558 - 3308579 + T 100 -14.5 -3.01125 | opp_overlap 3308554 3308552, overlap 3308556 3308555 CTGACTGAAGATTCA GAGTGACGC CCAT GCGTCACTC TGCTTTATCGGGGCT Shewmr4_2765 3308969 - 3308601 - | thioesterase superfamily protein TERM 4106 3309163 - 3309143 - R 100 -11.9 -5.75478 | overlap 3309145 AATTAGATAAAAAAA TAGCGACTC AGA GAGTCGCCA AGCTCAGGCAAGCAA TERM 4107 3309161 - 3309145 - R 100 -12.3 -4.50122 | overlap 3309143 TTAGATAAAAAAATA GCGACTC AGA GAGTCGC CAAGCTCAGGCAAGC TERM 4108 3309256 - 3309225 - R 100 -10.1 -4.65895 | overlap 3309210 GGTTTGACTTAAAAA CCCGTGCAGCACA TGTAGG CGAACTGCACGGG GGACAACAGCTGCAA TERM 4109 3309279 - 3309263 - R 71 -8.7 -3.30124 | overlap 3309265 CTGCACGGGGGACAA CAGCTGC AAT GCAGCTA AACACAGGGTTTACG Shewmr4_2766 3310666 - 3309344 - | isocitrate lyase TERM 4110 3310722 - 3310700 - R 77 -10.6 -3.14931 | overlap 3310705 GTGATGTTGTAGCAA GTGAAGCTGC CCC ACAGCCTCAC CCTGCCCATTGGTTT Shewmr4_2767 3312459 - 3310810 - | malate synthase TERM 4111 3311436 - 3311422 - G 71 -7 -4.15044 | CTTCGCTGGAATAAA GGCCGC CAT GCCGCC CATCGCCAGTGCGCC TERM 4112 3311742 - 3311729 - G 73 -5.3 -4.63218 | CTTTCTTCAACAAAA GCAAA CACT TTTGC CCACCAACGCGCTTC TERM 4113 3312953 - 3312931 - H 77 -6.4 -4.69656 | opp_overlap 3312949 AATGAGTTAACAAAA TTTAAACATG ACG CAAGTTTAAA CACTCGTTTAACTAT TERM 4114 3313096 - 3313074 - H 89 -7.2 -5.08015 | AACCCAAAAAATAAA TCACTTTTTT ATA AAAAAAATGA AACAAATTAGAAATC TERM 4115 3315043 - 3315055 + G 70 -2.7 -4.7497 | AACCTATATGCCCAT TGATG ATT TATCA TTTTTCGTCAATCAC Shewmr4_2768 3313295 - 3315766 + | TonB-dependent receptor TERM 4116 3315815 - 3315792 - T 100 -15.4 -4.08948 | opp_overlap 3315792, overlap 3315795 TAAGTCCATAAACAA CAAGAGAGCC CATC GGCTCTCTTG TTTGTTATAGTTGGC TERM 4117 3315792 - 3315815 + T 100 -15.4 -4.3953 | opp_overlap 3315792 3315795 TAAGTCCATAAACAA CAAGAGAGCC CATC GGCTCTCTTG TTTGTTATAGTTGGC TERM 4118 3315812 - 3315795 - T 100 -11.3 -4.15703 | opp_overlap 3315792, overlap 3315792 GTCCATAAACAACAA GAGAGCC CATC GGCTCTC TTGTTTGTTATAGTT Shewmr4_2769 3317604 - 3315835 - | potassium efflux system protein Shewmr4_2770 3319555 - 3317828 - | diguanylate cyclase Shewmr4_2771 3319831 - 3319619 - | hypothetical protein Shewmr4_2772 3320667 - 3319876 - | uroporphyrin-III C/tetrapyrrole methyltransferase TERM 4119 3321104 - 3321088 - g 83 -5.1 -5.16071 | opp_overlap 3321101 AATGATCAATAAAAA GCAAAGT CTT ACCCTGC TGAGCGCCATTGCGC Shewmr4_2773 3321041 - 3321565 + | SmpA/OmlA domain-containing protein TERM 4120 3321618 - 3321594 - T 100 -11.5 -4.57837 | opp_overlap 3321600, overlap 3321600 ACACTGCCTTAAAAA CAAAAAGCGCC AAT GGCGCTTTTTT TGTGTGCTGGTATTG TERM 4121 3321612 - 3321600 - T 100 -10.5 -5.61881 | opp_overlap 3321600, overlap 3321594 CCTTAAAAACAAAAA GCGCC AAT GGCGC TTTTTTTGTGTGCTG TERM 4122 3321600 - 3321612 + T 100 -10.5 -5.74122 | opp_overlap 3321600 3321594 CCTTAAAAACAAAAA GCGCC AAT GGCGC TTTTTTTGTGTGCTG Shewmr4_2774 3321977 - 3321642 - | hypothetical protein Shewmr4_2775 3322404 - 3321967 - | cyclase/dehydrase TERM 4123 3322695 - 3322682 - g 100 -5.9 -5.63857 | overlap 3322684 AAAAACTCAAAAAAA GCCGC GCCT GCGAC GATCGCACGCAATAA TERM 4124 3322847 - 3322837 - g 70 -2.4 -5.00616 | CGTCTTCTTAAAAAA TGGC GAA GCCT TTATGCACGGCTGTA smpB 3322658 - 3323149 + | SsrA-binding protein TERM 4125 3323591 - 3323606 + F 100 -9 -5.5074 | opp_overlap 3323591 AATTTAAGTAACTAA GACGTC TCTG GACGTC TTTTTTATTGCCTTC TERM 4126 3323606 - 3323591 - f 73 -9 -3.46482 | opp_overlap 3323591 AATTTAAGTAACTAA GACGTC TCTG GACGTC TTTTTTATTGCCTTC Shewmr4_2777 3323742 - 3324986 + | phage integrase family protein TERM 4127 3325034 - 3324993 - T 93 -12.5 -3.03309 | gap 1, opp_overlap 3324993 3324992 3324991, overlap 3324990 3324998 GCTGAATAATAATTA GTCAACAGGAGAGGCCAC CAAAAGC ATGGCCTC-CCTGTTAAC ATGTATTAGTTAGTC Shewmr4_2778 3327697 - 3325040 - | type III restriction enzyme, res subunit TERM 4128 3326304 - 3326328 + g 76 -5.8 -4.652 | gap 1, overlap 3326326 GGTTGACGTAGTACC CGGCCAATCAT TTGG GTGATTG-CCG TTTTTGCGGTCATTT TERM 4129 3326716 - 3326742 + g 91 -11.1 -4.36433 | opp_overlap 3326723, overlap 3326726 CACTTTTGTCTTCGT TGATTAAGTTG ATGGG CAACTTAATCA TTTGTTCATCTTTCA TERM 4130 3327477 - 3327495 + g 74 -4.4 -4.80455 | opp_overlap 3327477 CTTGTGACATAAGGA GCAGGCAC CAA GTGACCGC TTTTGTCTTTAAGTA Shewmr4_2779 3329567 - 3327699 - | DNA methylase N-4/N-6 domain-containing protein Shewmr4_2780 3329795 - 3329622 - | phage transcriptional regulator, AlpA Shewmr4_2781 3330472 - 3329900 - | resolvase domain-containing protein TERM 4131 3330613 - 3330576 - R 90 -11.5 -3.73509 | opp_overlap 3330570 3330569, overlap 3330577 ATATTAAATTGGAAA GTCTGGTATCAATATAC GAAT GTTTATTGATACCAGAT AATCAGGTTAATTTG TERM 4132 3330612 - 3330577 - R 100 -15 -2.83382 | opp_overlap 3330570 3330569, overlap 3330576 TATTAAATTGGAAAG TCTGGTATCAATATAC GAAT GTTTATTGATACCAGA TAATCAGGTTAATTT Shewmr4_2782 3331738 - 3330635 - | phage integrase family protein TERM 4133 3331539 - 3331550 + g 70 -4.4 -4.62783 | ACCTTTGATTTTTGA GCAA GAAG TTGC TTTTTAAACTCAATG Shewmr4_2783 3332213 - 3331722 - | hypothetical protein Shewmr4_2784 3332406 - 3332206 - | phage transcriptional regulator, AlpA TERM 4134 3332444 - 3332414 - R 100 -11.3 -5.71712 | opp_overlap 3332414 TTGGACATAAAAAAA CCTTTTAGTCGTT TATAG AACGACGAAAAGG TTATTAGAATTGATG TERM 4135 3332414 - 3332444 + r 93 -12 -3.68936 | opp_overlap 3332414 TTGGACATAAAAAAA CCTTTTAGTCGTTT ATA GAACGACGAAAAGG TTATTAGAATTGATG TERM 4136 3332499 - 3332470 - R 95 -9.4 -4.57569 | opp_overlap 3332470 TGATGCTTTCAAAAA CCGAATTCGG TTTTACGATT CCGAATTCGG TTTTTCGTTATCAGC TERM 4137 3332470 - 3332499 + r 100 -9.4 -4.93365 | opp_overlap 3332470 TGATGCTTTCAAAAA CCGAATTCGG TTTTACGATT CCGAATTCGG TTTTTCGTTATCAGC Shewmr4_2785 3333409 - 3332510 - | hypothetical protein TERM 4138 3333758 - 3333729 - R 100 -12.3 -4.93877 | opp_overlap 3333732, overlap 3333732 CCCCACCAAATAAAA CAAGGACTTAGCA GAAA TGCTAAGTCCTTT TTTCTTTTGAGTGGC TERM 4139 3333755 - 3333732 - R 100 -14 -4.56436 | opp_overlap 3333732, overlap 3333729 CACCAAATAAAACAA GGACTTAGCA GAAA TGCTAAGTCC TTTTTTCTTTTGAGT TERM 4140 3333732 - 3333755 + r 100 -14 -5.80951 | opp_overlap 3333732 3333729 CACCAAATAAAACAA GGACTTAGCA GAAA TGCTAAGTCC TTTTTTCTTTTGAGT TERM 4141 3333871 - 3333906 + r 78 -2 -5.51353 | TTCATTTCATTTTTT GATCTAGCTAAG GTGTTGATTTTA CTTAACTAGATC TTTTTATTATTTTTC Shewmr4_2786 3336147 - 3334447 - | hypothetical protein TERM 4142 3336002 - 3335985 - G 86 -5.5 -5.36441 | TCTCTACATAAAAAA GCGCG ACTGGCCA CGCGC CCTCTTGCTCGGTCG Shewmr4_2787 3338394 - 3336157 - | hypothetical protein TERM 4143 3337980 - 3338001 + g 73 -5.7 -4.49958 | overlap 3337973 CAAGGCCGCGCTCTG CCAGCATGG CTTG CCAGGCGGG TTTATTTAATGCGCT TERM 4144 3339116 - 3339095 - R 95 -7.3 -5.4505 | opp_overlap 3339094 3339095 GCCGCTAATAAAAAA GCACAACCC AATT AAGTTGTGC CTTTTAGATTAAATA Shewmr4_2788 3339456 - 3339154 - | heavy metal transport/detoxification protein Shewmr4_2789 3339770 - 3339453 - | mercuric transport protein MerT, putative Shewmr4_2790 3340926 - 3339787 - | twin-arginine translocation pathway signal TERM 4145 3341162 - 3341119 - R 81 -11.2 -3.40403 | opp_overlap 3341137 3341140, overlap 3341104 3341128 TTTGTCCCAGCATAA GACAAAAAACAGGTACAACA TGTA TGCCATACCTGTTTTGCGTC AACGAGGATGAGGGA TERM 4146 3341153 - 3341128 - R 91 -6.9 -5.5208 | opp_overlap 3341137 3341140, overlap 3341119 GCATAAGACAAAAAA CAGGTACAACA TGTA TGCCATACCTG TTTTGCGTCAACGAG Shewmr4_2791 3342449 - 3341178 - | HAAAP family transport protein TERM 4147 3342537 - 3342522 - H 100 -6.2 -5.68438 | TCAGCAAACAAAAAA TTCAAC TTTT GTTGAA CAAAGTGTCGCCGCT TERM 4148 3342659 - 3342640 - H 76 -2.9 -5.38326 | overlap 3342642 GCAACTAAACAAAAA TATGCAA ATAATA TTGCACA TAGAAATTCGATAGC Shewmr4_2792 3342706 - 3343089 + | putative endoribonuclease L-PSP TERM 4149 3343175 - 3343222 + G 86 -13.5 -3.63515 | gap 2, opp_overlap 3343164, overlap 3343180 AAACCCGCCCTAGGC TGTACCGAGCCGATTGCCGCCGC CTAT GCGGCGGCCGT-GGCCCG-TACA TTATTGCCCGTAGAG TERM 4150 3343180 - 3343218 + G 81 -14.5 -2.65808 | gap 1, overlap 3343175 CGCCCTAGGCTGTAC CGAGCCGATTGCCGCCGC CTAT GCGGCGGCCGT-GGCCCG TACATTATTGCCCGT TERM 4151 3343796 - 3343786 - g 87 -8.2 -4.77036 | CCGTACCATGAAAAA CGGC ATT GCCG CTGGGATCATCGGTG Shewmr4_2793 3343112 - 3344386 + | hypothetical protein Shewmr4_2794 3344428 - 3345108 + | YheO domain-containing protein TERM 4152 3345143 - 3345112 - T 100 -19 -4.56775 | opp_overlap 3345112, overlap 3345116 AGCCTCGCTTAAAAA CAAAGGGCTAAGAT GTTC ATCTTAGCCCTTTG TTTTTTATTAGCTTG TERM 4153 3345112 - 3345143 + T 100 -19 -5.5074 | opp_overlap 3345112 3345116 AGCCTCGCTTAAAAA CAAAGGGCTAAGAT GTTC ATCTTAGCCCTTTG TTTTTTATTAGCTTG TERM 4154 3345139 - 3345116 - T 100 -14 -4.85782 | opp_overlap 3345112, overlap 3345112 TCGCTTAAAAACAAA GGGCTAAGAT GTTC ATCTTAGCCC TTTGTTTTTTATTAG Shewmr4_2795 3346917 - 3345187 - | hypothetical protein TERM 4155 3345892 - 3345933 + g 74 -4.4 -4.79826 | opp_overlap 3345882 AGCAACAACTTTCAC GGCAG-GCGCAAGCTGGCTA AGCT TTGCCA-CTTGCTCACGGCC TTTTTGATCCTCTCT TERM 4156 3346754 - 3346743 - G 78 -5.8 -4.75174 | overlap 3346744 GACCTAAGGCAAAAA TGGC TAGC GCCA CGCCAACCCAGGGGA TERM 4157 3346763 - 3346773 + g 100 -6.8 -5.75342 | AGCGCCACGCCAACC CAGG GGA CCTG TTTTTTTTCCACAAC TERM 4158 3346964 - 3346934 - R 100 -14.2 -4.08216 | opp_overlap 3346936 3346941, overlap 3346936 3346941 CCATCGGCCTTAAAA CATAAAAGCAGCGA ATA TCGCTGCTTTTATT TATATCATCCACAGG TERM 4159 3346962 - 3346936 - R 100 -16.8 -3.63922 | opp_overlap 3346936 3346941, overlap 3346934 3346941 ATCGGCCTTAAAACA TAAAAGCAGCGA ATA TCGCTGCTTTTA TTTATATCATCCACA TERM 4160 3346936 - 3346962 + r 100 -16.8 -4.08706 | opp_overlap 3346934 3346936 3346941, overlap 3346941 ATCGGCCTTAAAACA TAAAAGCAGCGA ATA TCGCTGCTTTTA TTTATATCATCCACA TERM 4161 3346941 - 3346957 + r 100 -12.3 -5.06016 | opp_overlap 3346936 3346934 3346941, overlap 3346936 CCTTAAAACATAAAA GCAGCGA ATA TCGCTGC TTTTATTTATATCAT TERM 4162 3346957 - 3346941 - R 100 -12.3 -4.89567 | opp_overlap 3346941 3346936, overlap 3346936 3346934 CCTTAAAACATAAAA GCAGCGA ATA TCGCTGC TTTTATTTATATCAT Shewmr4_2796 3347900 - 3346986 - | hypothetical protein Shewmr4_2797 3348138 - 3348632 + | hypothetical protein TERM 4163 3348863 - 3348829 - g 73 -5.6 -4.67353 | overlap 3348852 3348853 TGATCGACGGAAAAA TTGTCGCCCGCGGCCA TAA CAAACGCGTGCAACAA GGCAGCGCCGTGCTG TERM 4164 3348884 - 3348852 - g 100 -14.1 -4.30719 | overlap 3348829 3348853 3348868 CGCGGCCATAACAAA CGCGTGCAACAAGGC AGC GCCGTGCTGCACGCC GAAATGGATTGCCTC TERM 4165 3348883 - 3348853 - g 100 -17.6 -3.1811 | overlap 3348829 3348852 3348868 GCGGCCATAACAAAC GCGTGCAACAAGGC AGC GCCGTGCTGCACGC CGAAATGGATTGCCT Shewmr4_2798 3348732 - 3349169 + | cytosine deaminase TERM 4166 3349155 - 3349177 + F 83 -10.7 -3.54459 | opp_overlap 3349155 CAGCTGTGGAACGAA GATATTGGC GAATA GCCAATATC TTTCAAAGCGGTTCA TERM 4167 3349177 - 3349155 - f 81 -10.7 -3.34013 | opp_overlap 3349155 CAGCTGTGGAACGAA GATATTGGC GAATA GCCAATATC TTTCAAAGCGGTTCA Shewmr4_2799 3349314 - 3350558 + | hypothetical protein Shewmr4_2800 3350536 - 3351009 + | hypothetical protein Shewmr4_2801 3351626 - 3351018 - | TetR family transcriptional regulator Shewmr4_2802 3351878 - 3352357 + | HPP family protein TERM 4168 3352401 - 3352378 - T 73 -6 -4.55826 | overlap 3352396 GTCAAAACACTAAAA CCTTAACGTG TTAA CACATTCAGG CGTGAAGTGGCTAAA TERM 4169 3352467 - 3352443 - T 100 -11.6 -4.9934 | opp_overlap 3352447 AGAAGAGGATAAAAA TAAAGGGCAA GTTGA TTGCCCTTTA TCAAAACTGCTCACT TERM 4170 3352447 - 3352463 + T 72 -8 -3.87075 | opp_overlap 3352443 GAGGATAAAAATAAA GGGCAA GTTGA TTGCCC TTTATCAAAACTGCT Shewmr4_2803 3353817 - 3352489 - | short chain fatty acid transporter Shewmr4_2804 3354039 - 3354509 + | peptidylprolyl isomerase, FKBP-type TERM 4171 3354525 - 3354549 + T 100 -17.3 -3.81755 | opp_overlap 3354525 3354529, overlap 3354529 TTTCAATATTAAAAA CAAAGCCATGC ACT GCATGGCTTTG TTCTATTTAGGCGCT TERM 4172 3354549 - 3354525 - T 100 -17.3 -4.87626 | opp_overlap 3354525 3354529, overlap 3354529 TTTCAATATTAAAAA CAAAGCCATGC ACT GCATGGCTTTG TTCTATTTAGGCGCT TERM 4173 3354529 - 3354545 + T 100 -12.3 -4.52143 | opp_overlap 3354525 3354529, overlap 3354525 AATATTAAAAACAAA GCCATGC ACT GCATGGC TTTGTTCTATTTAGG TERM 4174 3354545 - 3354529 - T 100 -12.3 -4.95618 | opp_overlap 3354529 3354525, overlap 3354525 AATATTAAAAACAAA GCCATGC ACT GCATGGC TTTGTTCTATTTAGG Shewmr4_2805 3357182 - 3354576 - | glycosyl hydrolase family chitinase TERM 4175 3355023 - 3355035 + g 76 -7.7 -4.4009 | TGGCGCCGTCACCAC CAGTG TGG CACTG TTTTGTCCACTCGCC TERM 4176 3357722 - 3357667 - R 100 -8.3 -5.07486 | opp_overlap 3357685, overlap 3357669 GAGTGCGAATAAAAA TACGGCCATTGAATCGGTGCGCTTC AATACA GAAGCACTCTTACCCAATGACCGCA TGATTTTTATCTTTA TERM 4177 3357720 - 3357669 - R 83 -8.7 -4.16307 | opp_overlap 3357685, overlap 3357667 GTGCGAATAAAAATA CGGCCATTGAATCGGTGCGCTTC AATACA GAAGCACTCTTACCCAATGACCG CATGATTTTTATCTT Shewmr4_2806 3358616 - 3357825 - | ROK family protein TERM 4178 3358522 - 3358534 + g 70 -3.3 -4.82162 | TCAATTTTAAAGCCT TCACC CGT GGGGA TTTTATATTGTTCTG TERM 4179 3359869 - 3359847 - g 76 -7.6 -4.36914 | overlap 3359849 3359850 CGCTTGGGCACAAAA TATCGCCCGC GAT GCAGGCGCCA AGTTAATTGCCGGTA TERM 4180 3359867 - 3359849 - g 70 -8 -3.79419 | overlap 3359847 3359850 CTTGGGCACAAAATA TCGCCCGC GAT GCAGGCGC CAAGTTAATTGCCGG TERM 4181 3359866 - 3359850 - g 73 -11.5 -2.8733 | overlap 3359849 3359847 TTGGGCACAAAATAT CGCCCGC GAT GCAGGCG CCAAGTTAATTGCCG TERM 4182 3359938 - 3359919 - g 70 -2.1 -5.00642 | gap 1, overlap 3359921 3359932 TAAGGCACAGAAAAA TG-CCGCC GAATT AGCGGGCA TGCGCGCCAGCCATA Shewmr4_2807 3358978 - 3360795 + | peptidase M24 TERM 4183 3360815 - 3360834 + F 100 -9.3 -5.06414 | opp_overlap 3360815 CGTTCAACACGAAAA CCCAAGC CCCAGC GCTTGGG TTTTTATTAGAAGCA TERM 4184 3360834 - 3360815 - f 95 -9.3 -4.4261 | opp_overlap 3360815 CGTTCAACACGAAAA CCCAAGC CCCAGC GCTTGGG TTTTTATTAGAAGCA TERM 4185 3361173 - 3361160 - f 70 -3.9 -4.88388 | overlap 3361168 ATAACCCCACAAAAA TGATA CCAT TATCA CATAACAAGCCGGCT TERM 4186 3361203 - 3361182 - f 74 -7.9 -3.91332 | opp_overlap 3361180 3361194, overlap 3361196 ATTATCACATAACAA GCCGGCTCC AATG AGAGCTGGC ACTCGTTTTACCCGT TERM 4187 3361747 - 3361764 + G 73 -11.3 -2.90227 | overlap 3361746 AGCGATTTGTGTCTG CCGTGGT GGCC ACCACGG GTTTACTGATTGCAG Shewmr4_2808 3361263 - 3362831 + | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Shewmr4_2809 3363156 - 3364457 + | DEAD/DEAH box helicase domain-containing protein TERM 4188 3364536 - 3364507 - T 100 -12.3 -3.49419 | opp_overlap 3364514, overlap 3364514 TCTCGTTATAAAAAG CAAAAAAGCGTCC TAAG GGACGCTTTTTTT ATTGAGCCGAAACAA TERM 4189 3364529 - 3364514 - T 100 -10.4 -5.56112 | opp_overlap 3364514, overlap 3364507 ATAAAAAGCAAAAAA GCGTCC TAAG GGACGC TTTTTTTATTGAGCC TERM 4190 3364514 - 3364529 + T 100 -10.4 -5.7946 | opp_overlap 3364514 3364507 ATAAAAAGCAAAAAA GCGTCC TAAG GGACGC TTTTTTTATTGAGCC Shewmr4_2810 3365582 - 3364689 - | hypothetical protein Shewmr4_2811 3365890 - 3366537 + | redoxin domain-containing protein TERM 4191 3366554 - 3366589 + F 70 -7.1 -3.75437 | gap 2 CCTAGATAAACCATC GCAGCCAGTAAGAATCG TTAT CGATT-T-ATTGGCTGC TTTGCTAAACTAGTT Shewmr4_2812 3366667 - 3367302 + | hypothetical protein TERM 4192 3367448 - 3367463 + G 76 -6.1 -4.73613 | GGTATTTCCTATCGT TGGCG AGTAAA CGCCA TTTTGTTACTGCTAC Shewmr4_2813 3367421 - 3368170 + | hypothetical protein Shewmr4_2814 3368588 - 3368280 - | hypothetical protein Shewmr4_2815 3369253 - 3368693 - | PfpI family intracellular peptidase TERM 4193 3368897 - 3368920 + g 71 -6.7 -4.1891 | opp_overlap 3368872 CGTCAGTAGCTGCGC CCCATGGCA AACGGC TGCAATGGG TTTATCTTGGGCGGC TERM 4194 3369154 - 3369126 - G 70 -10.3 -3.02263 | ATAGCGGTCTTAATA GTTTGCCCCGCCA CTT TATCAGGGCAAAC AACCGTCACATTGTG TERM 4195 3369389 - 3369376 - R 100 -9.5 -5.64274 | opp_overlap 3369376 TCAGGCATAAAAAAA GCGCC CGCA GGCGC TTTAATCTAAACCAT TERM 4196 3369376 - 3369389 + r 81 -9.5 -3.83205 | opp_overlap 3369376 TCAGGCATAAAAAAA GCGCC CGCA GGCGC TTTAATCTAAACCAT Shewmr4_2816 3371188 - 3369410 - | band 7 protein TERM 4197 3370158 - 3370180 + g 85 -7.6 -4.77036 | overlap 3370160 3370162 GCAGACTCTTCTTCC GACTTCGCGG CTA CCGCGATGTG TTTTTCCTGCTCGGC TERM 4198 3370160 - 3370178 + g 84 -10.2 -4.00443 | overlap 3370158 3370162 AGACTCTTCTTCCGA CTTCGCGG CTA CCGCGATG TGTTTTTCCTGCTCG TERM 4199 3370162 - 3370176 + g 79 -11.4 -3.58504 | overlap 3370160 3370158 ACTCTTCTTCCGACT TCGCGG CTA CCGCGA TGTGTTTTTCCTGCT Shewmr4_2817 3371857 - 3371222 - | hypothetical protein TERM 4200 3371968 - 3371958 - R 84 -2.6 -5.63517 | TTTCCAAACAAAAAA TTTA CCC TAAA ACGGATTTTGACTAA Shewmr4_2818 3372530 - 3371964 - | hypothetical protein Shewmr4_2819 3372600 - 3374105 + | carboxypeptidase Taq Shewmr4_2820 3374224 - 3374718 + | GCN5-related N-acetyltransferase Shewmr4_2821 3374715 - 3375068 + | hypothetical protein Shewmr4_2822 3375106 - 3375363 + | hypothetical protein Shewmr4_2823 3375403 - 3375912 + | RDD domain-containing protein Shewmr4_2824 3375962 - 3376627 + | hypothetical protein TERM 4201 3376679 - 3376638 - T 100 -14.7 -5.13527 | opp_overlap 3376650, overlap 3376639 3376640 3376650 AATGAACAAATAAAA CGTAATAAAAAACGACGCC TTAT GGCGTCGTTTTTTATTATC CGCGTTTGATCACCG TERM 4202 3376678 - 3376639 - T 100 -18.2 -3.65676 | opp_overlap 3376650, overlap 3376638 3376640 3376650 ATGAACAAATAAAAC GTAATAAAAAACGACGCC TTAT GGCGTCGTTTTTTATTAT CCGCGTTTGATCACC TERM 4203 3376677 - 3376640 - T 100 -21.7 -2.77779 | opp_overlap 3376650, overlap 3376639 3376638 3376650 TGAACAAATAAAACG TAATAAAAAACGACGCC TTAT GGCGTCGTTTTTTATTA TCCGCGTTTGATCAC TERM 4204 3376667 - 3376650 - T 100 -12.7 -5.52096 | opp_overlap 3376650, overlap 3376640 3376639 3376638 AAACGTAATAAAAAA CGACGCC TTAT GGCGTCG TTTTTTATTATCCGC TERM 4205 3376650 - 3376667 + T 100 -12.7 -5.55769 | opp_overlap 3376640 3376639 3376638 3376650 AAACGTAATAAAAAA CGACGCC TTAT GGCGTCG TTTTTTATTATCCGC Shewmr4_2825 3377747 - 3376689 - | permease YjgP/YjgQ family protein Shewmr4_2826 3378856 - 3377744 - | permease YjgP/YjgQ family protein Shewmr4_2827 3379112 - 3380620 + | leucyl aminopeptidase TERM 4206 3380658 - 3380640 - f 100 -13.2 -4.32048 | opp_overlap 3380640 TAACAACACTGAAAA GGCGAAGA ATT TCTTCGCC TTTTTTATTTGGCTC TERM 4207 3380640 - 3380658 + F 100 -13.2 -5.65927 | opp_overlap 3380640 TAACAACACTGAAAA GGCGAAGA ATT TCTTCGCC TTTTTTATTTGGCTC TERM 4208 3380912 - 3380884 - f 82 -5.9 -5.05577 | opp_overlap 3380890, overlap 3380890 AAACGAAAGTAAAAA TCCAAAGCCTCCC ACT GGGAGGCTTTTTC GTCTTAAACGCTCGA TERM 4209 3380906 - 3380890 - f 100 -13.7 -4.02315 | opp_overlap 3380890, overlap 3380884 AAGTAAAAATCCAAA GCCTCCC ACT GGGAGGC TTTTTCGTCTTAAAC TERM 4210 3380890 - 3380906 + F 100 -13.7 -4.87626 | opp_overlap 3380890 3380884 AAGTAAAAATCCAAA GCCTCCC ACT GGGAGGC TTTTTCGTCTTAAAC TERM 4211 3381269 - 3381259 - g 70 -3.2 -4.84529 | opp_overlap 3381261, overlap 3381261 CCAGAAACCCAAAAA CAGC AGT ACTG TATTGCTTACCTTGG Shewmr4_2828 3380953 - 3382956 + | prephenate dehydratase / chorismate mutase TERM 4212 3383011 - 3382983 - T 100 -14.7 -3.71888 | opp_overlap 3382985, overlap 3382985 AAGGATACTGAAGAA CATACAGCCACGA ATA TCGTGGCTGTATT GTTTAGGACTTAGGA TERM 4213 3383009 - 3382985 - T 100 -17.3 -3.43446 | opp_overlap 3382985, overlap 3382983 GGATACTGAAGAACA TACAGCCACGA ATA TCGTGGCTGTA TTGTTTAGGACTTAG TERM 4214 3382985 - 3383009 + T 100 -17.3 -3.94 | opp_overlap 3382983 3382985 GGATACTGAAGAACA TACAGCCACGA ATA TCGTGGCTGTA TTGTTTAGGACTTAG Shewmr4_2829 3384406 - 3383102 - | sodium/hydrogen exchanger TERM 4215 3384190 - 3384174 - G 76 -5.1 -4.84673 | GCAAACAAGAGAAAA CCCAACA TGC CGTTGAG TAAAAGGGCCTGAAA Shewmr4_2830 3384787 - 3384452 - | hypothetical protein TERM 4216 3384812 - 3384836 + r 70 -7.9 -3.67864 | gap 1 CCAGCCAGACGATGG GAC-AGGGCG TTACTC CGCCCTCGTC TTTAACCTTACGTTC Shewmr4_2831 3386081 - 3384951 - | oxidoreductase FAD-binding subunit TERM 4217 3386111 - 3386086 - R 76 -11.2 -2.64616 | overlap 3386105 TTTGTATCCATAGCA CCGCGGCTTT ACAACG AAAGCCGCAG TGACCCATGCGTCAA Shewmr4_2832 3387796 - 3386132 - | hydroxylamine reductase TERM 4218 3387971 - 3387989 + r 91 -7.4 -5.38958 | opp_overlap 3387971 3387973, overlap 3387973 AAAACCTAAAAAAAA TACCCATC AAA GATGGGCA TTTTTGTTTCTAAGT TERM 4219 3387989 - 3387971 - R 100 -9.6 -5.91981 | opp_overlap 3387971 3387973, overlap 3387973 AAAACCTAAAAAAAA TACCCATC AAA GATGGGCA TTTTTGTTTCTAAGT TERM 4220 3387987 - 3387973 - R 100 -10 -4.56715 | opp_overlap 3387973 3387971, overlap 3387971 AACCTAAAAAAAATA CCCATC AAA GATGGG CATTTTTGTTTCTAA TERM 4221 3387973 - 3387987 + r 72 -10 -2.87964 | opp_overlap 3387971 3387973, overlap 3387971 AACCTAAAAAAAATA CCCATC AAA GATGGG CATTTTTGTTTCTAA tyrA 3389153 - 3388014 - | bifunctional chorismate mutase/prephenate dehydrogenase Shewmr4_2834 3390307 - 3389216 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 4222 3390223 - 3390235 + g 71 -6.9 -4.21194 | opp_overlap 3390223 ACGCATGCTCAGAGA GTGGC AGG GCCGC TTTTAGCTCCTGCGG TERM 4223 3390654 - 3390621 - R 70 -6 -4.386 | overlap 3390632 TAACGCCGCAGAAAA GCCAGACAAATGCT GCCCGA AGGGTTCGTCTGGC AAGCCCTTGCACTTT TERM 4224 3390943 - 3390897 - R 91 -4.6 -5.61881 | gap 2, opp_overlap 3390914, overlap 3390907 3390914 GGCTAAAAAGAAAAA CGTCAGGCAACAAAAAACCGCC ACGAG GGCGGTTTTCTGT-GCG-AACA CTACGTCTTGTTTTC TERM 4225 3390935 - 3390907 - R 100 -14 -3.10082 | opp_overlap 3390914, overlap 3390897 3390914 AAAAACGTCAGGCAA CAAAAAACCGCC ACGAG GGCGGTTTTCTG TGCGAACACTACGTC TERM 4226 3390928 - 3390914 - R 100 -8.5 -5.4833 | opp_overlap 3390914, overlap 3390907 3390897 TCAGGCAACAAAAAA CCGCC ACGAG GGCGG TTTTCTGTGCGAACA TERM 4227 3390914 - 3390928 + r 87 -8.5 -4.52589 | opp_overlap 3390914 3390907 3390897 TCAGGCAACAAAAAA CCGCC ACGAG GGCGG TTTTCTGTGCGAACA rplS 3391326 - 3390973 - | 50S ribosomal protein L19 TERM 4228 3391292 - 3391307 + g 76 -7.6 -4.36063 | overlap 3391296 ACGTCTTGTTTCATT TGCTCA TCGT TGAGCA TTTTAATGATGTTGT trmD 3392107 - 3391361 - | tRNA (guanine-N(1)-)-methyltransferase TERM 4229 3391615 - 3391587 - G 77 -9.5 -3.75665 | opp_overlap 3391606, overlap 3391588 GGACAGTCCAGTAAA CCGTCGGAGAAAG AAT CTTGCTCCGCCGA AGCTTGTTTTCCTAG rimM 3392653 - 3392123 - | 16S rRNA-processing protein rpsP 3392922 - 3392674 - | 30S ribosomal protein S16 TERM 4230 3392909 - 3392925 + g 71 -6.5 -4.22652 | opp_overlap 3392909 CCACCACGAGCTAAA CGAATGG TAA CCATGCG TTTTCAATCCTCTAA TERM 4231 3392996 - 3392967 - R 84 -2.7 -5.67529 | opp_overlap 3392967 AAGCAAAAATAAAAA CTGGAACCCCGTG TTCG CGAAGAGTCCCAG ATAGAAAGCCGGAAG TERM 4232 3393127 - 3393114 - R 70 -5.3 -4.48823 | overlap 3393106 AACCAACTGATAAAA CATCA ACTT TGATG AAAATCGCTGGAATT Shewmr4_2839 3394514 - 3393141 - | signal recognition particle protein TERM 4233 3393204 - 3393225 + g 76 -5.1 -4.81734 | gap 1 GCGCATCATCTTCTG GATG-CCGCC CTT GGCAGACATC TTTTTCATCATCTTT TERM 4234 3393326 - 3393342 + g 73 -5.1 -4.6856 | GACGCTTACGTGAGC CCTTGAT TAA ATCGGGG TTTTTACGCTCTTTC TERM 4235 3393474 - 3393486 + g 70 -3.4 -4.83269 | TTCAATCATGCTCAT CATG CCGCC CATG TTTTTCATCTGCTGT Shewmr4_2840 3394803 - 3395591 + | cytochrome c assembly protein TERM 4236 3395637 - 3395595 - f 100 -13.7 -3.67775 | opp_overlap 3395591 3395605 ATTCTTAGTTAATAA TTTCAAGTCAGCTTAGG CGCTTATTC CCTAAGCTGACTTGACA CTCCGTGTATTTCTC TERM 4237 3396793 - 3396782 - g 71 -5.8 -4.30977 | overlap 3396778 AATAAAGAAATGAAA TGGG ACTT CCCA ACCGATGGCCCCAAA Shewmr4_2841 3395693 - 3396964 + | hypothetical protein TERM 4238 3397009 - 3396982 - T 100 -14.2 -5.36441 | opp_overlap 3396982 TCCCCATATAAAAAA TCGGCTGAATCC AAAT GGAATCAGCCGA TTTCCTTCTCCCCCA TERM 4239 3396982 - 3397009 + T 100 -14.2 -3.9941 | opp_overlap 3396982 TCCCCATATAAAAAA TCGGCTGAATCC AAAT GGAATCAGCCGA TTTCCTTCTCCCCCA Shewmr4_2842 3397566 - 3397030 - | hypothetical protein TERM 4240 3397699 - 3397719 + r 90 -11.1 -4.06502 | opp_overlap 3397699 3397700, overlap 3397700 TTACGCAGTAAAGAA TCCGCCTTC TTA GAAGGCGGC TTTGATTTGCCCCTG TERM 4241 3397719 - 3397699 - R 90 -11.1 -4.015 | opp_overlap 3397699 3397700, overlap 3397700 TTACGCAGTAAAGAA TCCGCCTTC TTA GAAGGCGGC TTTGATTTGCCCCTG TERM 4242 3397700 - 3397718 + r 100 -14.6 -3.03419 | opp_overlap 3397700 3397699, overlap 3397699 TACGCAGTAAAGAAT CCGCCTTC TTA GAAGGCGG CTTTGATTTGCCCCT TERM 4243 3397718 - 3397700 - R 100 -14.6 -3.00418 | opp_overlap 3397699 3397700, overlap 3397699 TACGCAGTAAAGAAT CCGCCTTC TTA GAAGGCGG CTTTGATTTGCCCCT TERM 4244 3397726 - 3397744 + r 80 -8.8 -3.91084 | overlap 3397728 GAAGGCGGCTTTGAT TTGCCCCT GGA AGGGGCTA TTTCCTTACACCTAC TERM 4245 3397728 - 3397742 + r 89 -11.4 -3.54414 | overlap 3397726 AGGCGGCTTTGATTT GCCCCT GGA AGGGGC TATTTCCTTACACCT Shewmr4_2843 3398193 - 3397756 - | transposase IS200-family protein TERM 4246 3398301 - 3398277 - R 78 -9.9 -3.42056 | opp_overlap 3398280, overlap 3398280 AGCCTTAAGGGACAA TCACCACCGCC AGA GGCGGTGGTTT TGGGATGACAATAAA TERM 4247 3398280 - 3398298 + r 100 -16 -4.13945 | opp_overlap 3398280 3398277 CTTAAGGGACAATCA CCACCGCC AGA GGCGGTGG TTTTGGGATGACAAT TERM 4248 3398298 - 3398280 - R 100 -16 -2.86539 | opp_overlap 3398280, overlap 3398277 CTTAAGGGACAATCA CCACCGCC AGA GGCGGTGG TTTTGGGATGACAAT TERM 4249 3398320 - 3398335 + r 89 -10.4 -3.99592 | opp_overlap 3398320 GATGACAATAAAAAA GGGAGC TAAG GCTCCC TTTGTGCTAATGGGT TERM 4250 3398335 - 3398320 - R 100 -10.4 -5.58179 | opp_overlap 3398320 GATGACAATAAAAAA GGGAGC TAAG GCTCCC TTTGTGCTAATGGGT Shewmr4_2844 3398740 - 3398357 - | holo-acyl-carrier-protein synthase Shewmr4_2845 3399477 - 3398740 - | pyridoxal phosphate biosynthetic protein PdxJ TERM 4251 3399172 - 3399186 + g 73 -5.7 -4.57569 | TAAACCGCCTTCAGT CGTCA CTTCT TGACG TTTTTCAGGGACTAA Shewmr4_2846 3400268 - 3399567 - | DNA repair protein RecO TERM 4252 3400122 - 3400112 - G 76 -5.4 -4.81249 | CGCTAAATTCAAAAA TCAG CGG CTGA AAGGGCTGGAGGATA era 3401337 - 3400318 - | GTP-binding protein Era TERM 4253 3400659 - 3400649 - G 76 -6.8 -4.49337 | TCAGAAGCCATAAAA CGCT GCG AGCG GTCGGTCACATAATC TERM 4254 3400875 - 3400893 + g 75 -8.8 -3.95852 | overlap 3400888 AAACGGTTTTACGCT CTTCACCG CCA CGGCGAAG TTTGCTTAATACCAT Shewmr4_2848 3402014 - 3401334 - | RNAse III Shewmr4_2849 3402933 - 3402016 - | signal peptidase I TERM 4255 3402420 - 3402435 + g 73 -5.4 -4.68593 | gap 1, overlap 3402422 3402423 CTGGGCAATGGGTTT GCTCTGC GCC GCAG-GC TTTTTGGATCATCAA TERM 4256 3403082 - 3403064 - R 100 -16 -3.97057 | opp_overlap 3403054 3403051 3403050, overlap 3403074 GATAAGCTAAGTAAA GCGCCGCA AAC TGCGGCGC AATAATAGCTAAATT TERM 4257 3403107 - 3403119 + r 72 -7.7 -3.76952 | TAAATTGTGTTATCT CGAGT GTT ACTCG TTTAGCTTAAGTACC Shewmr4_2850 3404903 - 3403113 - | GTP-binding protein LepA TERM 4258 3403598 - 3403628 + g 70 -4.7 -4.65895 | gap 1, opp_overlap 3403607 CGGCCACTTGATTAC CGTGGTAAACCATG TTCA CTTGGG-TACCACG TTTTTCGATACACAA TERM 4259 3404488 - 3404506 + g 78 -6 -4.88918 | overlap 3404483 GCTACGCGCTCAGGA TCGGCTTG GGG TAAGTCGA TTTTGTTTAGAATAG Shewmr4_2851 3405544 - 3405071 - | positive regulator of sigma(E), RseC/MucC Shewmr4_2852 3406488 - 3405556 - | sigma E regulatory protein, MucB/RseB TERM 4260 3406348 - 3406331 - G 76 -8.4 -4.21322 | TGAAGATAAACCAAA GGCCGA ATATGG TCGGCC TGAAGTTGTATAATC Shewmr4_2853 3407124 - 3406501 - | anti sigma-E protein, RseA TERM 4261 3407157 - 3407174 + r 100 -7.7 -5.31456 | overlap 3407158 TTAAGGGTGTTACTC TTCCAGC AATG GCTGGAG TTTTTTGTCGATTGC TERM 4262 3407158 - 3407173 + r 78 -9 -3.77789 | overlap 3407157 TAAGGGTGTTACTCT TCCAGC AATG GCTGGA GTTTTTTGTCGATTG Shewmr4_2854 3407729 - 3407151 - | RNA polymerase sigma factor RpoE Shewmr4_2855 3407919 - 3409532 + | L-aspartate oxidase TERM 4263 3409593 - 3409552 - T 95 -11.7 -3.80625 | opp_overlap 3409558, overlap 3409554 3409558 GTTGCATAACGTAAA TATTAAGCGGGCTAAATCT ACTC AGATTTAGCCCGCTTTGTT TAGTCAAACTAAAAT TERM 4264 3409591 - 3409554 - T 100 -14.3 -3.48766 | opp_overlap 3409558, overlap 3409552 3409558 TGCATAACGTAAATA TTAAGCGGGCTAAATCT ACTC AGATTTAGCCCGCTTTG TTTAGTCAAACTAAA TERM 4265 3409558 - 3409587 + T 100 -19.5 -4.49556 | opp_overlap 3409554 3409552 3409558 TAACGTAAATATTAA GCGGGCTAAATCT ACTC AGATTTAGCCCGC TTTGTTTAGTCAAAC TERM 4266 3409587 - 3409558 - T 100 -19.5 -3.481 | opp_overlap 3409558, overlap 3409554 3409552 TAACGTAAATATTAA GCGGGCTAAATCT ACTC AGATTTAGCCCGC TTTGTTTAGTCAAAC Shewmr4_2856 3410088 - 3409648 - | hypothetical protein TERM 4267 3410047 - 3410025 - G 100 -14.2 -5.4433 | AGACACAAACAAAAA CGACCAACGA GAG TCGCTGGTCG AAGGAGGCTTTTACA Shewmr4_2857 3410308 - 3410069 - | hypothetical protein TERM 4268 3410410 - 3410383 - R 86 -12.2 -3.05935 | gap 1, opp_overlap 3410379 3410389 AGAGTGTCGATGCAA GCAGTGCTGAAAC TCG GTTT-AGCACTGC TGGACTTGGCTGTCT nhaR 3411309 - 3410401 - | transcriptional activator NhaR TERM 4269 3411358 - 3411334 - R 93 -14.3 -2.52464 | overlap 3411302 3411319 GCTTCCTCTAAGGGA TGCCGCAACCC TTA AGGCTGCGGCA TGTCGGATCGCAATG Shewmr4_2859 3411791 - 3411405 - | hypothetical protein Shewmr4_2860 3412963 - 3411794 - | Na+/H+ antiporter NhaA TERM 4270 3413032 - 3413069 + r 83 -9.3 -3.92542 | gap 1, opp_overlap 3413023 3413041 GTATAATCGATAGTT TCGACAAAACACCTCG TTAATTC CGAGGTG-TTAGTCGA TTATTTCGCCATCAA TERM 4271 3413061 - 3413041 - R 82 -8.3 -4.38154 | opp_overlap 3413032 ATAGTTTCGACAAAA CACCTCG TTAATTC CGAGGTG TTAGTCGATTATTTC thyA 3413875 - 3413081 - | thymidylate synthase TERM 4272 3413453 - 3413432 - G 82 -7.3 -4.69622 | gap 1, opp_overlap 3413432, overlap 3413436 ATAGAATTGGAAAAA GGCA-TGGCA AGG TGCCAACGCC ATTTTATCCAGCTCG Shewmr4_2862 3414681 - 3413875 - | prolipoprotein diacylglyceryl transferase Shewmr4_2863 3415527 - 3414727 - | hypothetical protein Shewmr4_2864 3417820 - 3415586 - | phosphoenolpyruvate-protein phosphotransferase PtsP TERM 4273 3416572 - 3416585 + g 74 -8.1 -4.07885 | ACTCCTGCGCGTATT GGCGT TGCA ACGCC TTTTGCGCCGAAATC Shewmr4_2865 3418368 - 3417844 - | dinucleoside polyphosphate hydrolase TERM 4274 3418508 - 3418540 + H 80 -10 -3.57462 | opp_overlap 3418492 3418491, overlap 3418508 3418510 CAAGGGTTTCAACCT TGGGGATATCCACA TTTTC TGTGGATATCTCTG TTTGAAACTAGGGTA TERM 4275 3418510 - 3418538 + H 95 -12.6 -3.36515 | opp_overlap 3418491, overlap 3418508 3418508 AGGGTTTCAACCTTG GGGATATCCACA TTTTC TGTGGATATCTC TGTTTGAAACTAGGG Shewmr4_2866 3419060 - 3419731 + | DNA mismatch repair protein Shewmr4_2867 3419915 - 3420922 + | putative adenylate/guanylate cyclase Shewmr4_2868 3421859 - 3420948 - | LysR family transcriptional regulator TERM 4276 3422068 - 3422040 - R 75 -10.3 -2.73854 | overlap 3422037 CAGGAAATGAGACTA TCGAGGTGCAACC TGA AGCTGCACCTCTA GGCGACAAACTAGGC Shewmr4_2869 3422443 - 3422078 - | Hpt protein Shewmr4_2870 3423557 - 3422628 - | putative radical SAM protein Shewmr4_2871 3423796 - 3423557 - | hypothetical protein TERM 4277 3423799 - 3423788 - G 73 -3 -4.93365 | GCTCACAAGCAAAAA GAAT AACA ATTC ACTTATTTCATATTT TERM 4278 3424223 - 3424205 - g 75 -8.8 -3.89346 | opp_overlap 3424202 3424205 GCTTGATTGCACAAA TGGATGGC GAA GCCAGCCA TCGTATCGTGCGCAC TERM 4279 3425323 - 3425311 - g 100 -10.5 -4.68424 | overlap 3425313 GAAGTGATTGAAAAA GGCCG CGT CGGCC CGGGTGAACTGTTAG gltB 3424144 - 3428592 + | glutamate synthase subunit alpha TERM 4280 3428884 - 3428902 + G 80 -13.2 -2.87463 | GAGATCTGCGGCCGC GTCTGTCC ACA GGACAGAC TCTGTGAAGGGGCTT gltD 3428599 - 3430005 + | glutamate synthase subunit beta TERM 4281 3430081 - 3430100 + F 100 -9.2 -5.53288 | overlap 3430082 TTGCTTGTGAATTTT GGCGCACC TTAG GGTGCGCA TTTTTTTACCTTCCG TERM 4282 3430082 - 3430099 + F 100 -12.7 -3.90888 | overlap 3430081 TGCTTGTGAATTTTG GCGCACC TTAG GGTGCGC ATTTTTTTACCTTCC Shewmr4_2874 3430253 - 3430963 + | methylthioadenosine nucleosidase TERM 4283 3431406 - 3431396 - g 73 -3.2 -5.0538 | TGCCAGCGCAAAAAA GCTA TTA CAGC CGTGGGTTGTCCGAG Shewmr4_2875 3430995 - 3431987 + | cobalamin biosynthesis protein CbiB Shewmr4_2876 3432043 - 3432420 + | hypothetical protein Shewmr4_2877 3432417 - 3433043 + | hypothetical protein Shewmr4_2878 3433045 - 3433536 + | hypothetical protein Shewmr4_2879 3433661 - 3434089 + | hypothetical protein TERM 4284 3434140 - 3434171 + T 100 -14.6 -2.79276 | opp_overlap 3434147, overlap 3434147 AGATAAAATGCAGTT ATAAAAAGAGCGCC CTTA GGCGCTCTTTTTAC TGCTTGGTAAGTACT TERM 4285 3434147 - 3434164 + T 100 -12.7 -4.81685 | opp_overlap 3434147, overlap 3434140 ATGCAGTTATAAAAA GAGCGCC CTTA GGCGCTC TTTTTACTGCTTGGT TERM 4286 3434164 - 3434147 - T 100 -12.7 -4.88067 | opp_overlap 3434147 3434140 ATGCAGTTATAAAAA GAGCGCC CTTA GGCGCTC TTTTTACTGCTTGGT Shewmr4_2880 3435468 - 3434242 - | tyrosyl-tRNA synthetase Shewmr4_2881 3435566 - 3436966 + | peptidase M23B anmK 3436986 - 3438095 + | anhydro-N-acetylmuramic acid kinase Shewmr4_2883 3440255 - 3438105 - | transcriptional regulator domain-containing protein TERM 4287 3439098 - 3439088 - G 79 -6.8 -4.72272 | overlap 3439092 CTTCCGTAGCAAAAA CCAG CGA CTGG CTATCAGGCGTCCAA TERM 4288 3439919 - 3439932 + g 74 -9.5 -3.56594 | opp_overlap 3439917 3439919 TAGGGGGCAATAACA GGCGG TAGC CCGCC TTTCGAACCGTTTCA TERM 4289 3439932 - 3439919 - G 72 -9.5 -3.39288 | opp_overlap 3439919, overlap 3439917 TAGGGGGCAATAACA GGCGG TAGC CCGCC TTTCGAACCGTTTCA Shewmr4_2884 3440565 - 3442970 + | glutamyl peptidase TERM 4290 3442998 - 3442984 - T 72 -10 -2.77113 | overlap 3442979 3442983 AATCTACAAACCAAT GCGCTT GGT AAGCGC TTAACATTTCACAAG TERM 4291 3443066 - 3443016 - T 100 -14.8 -3.81848 | opp_overlap 3443018, overlap 3443018 3443020 AACATTTCACAAGAA CACATCTCAGGCCATTGGCGGC ATAACGA GCCGCCAATGGCCTAACAAGTT ACTGTCATCGCCAGT TERM 4292 3443064 - 3443018 - T 100 -17.4 -3.48824 | opp_overlap 3443018, overlap 3443016 3443020 CATTTCACAAGAACA CATCTCAGGCCATTGGCGGC ATAACGA GCCGCCAATGGCCTAACAAG TTACTGTCATCGCCA TERM 4293 3443018 - 3443064 + T 100 -15.2 -3.29471 | opp_overlap 3443018 3443016 3443020 CATTTCACAAGAACA CATCTCAGGCCATTGGCGGC ATAACGA GCCGCCAATGGCCTAACAAG TTACTGTCATCGCCA TERM 4294 3443062 - 3443020 - T 100 -18.6 -3.31208 | opp_overlap 3443018, overlap 3443018 3443016 TTTCACAAGAACACA TCTCAGGCCATTGGCGGC ATAACGA GCCGCCAATGGCCTAACA AGTTACTGTCATCGC TERM 4295 3443447 - 3443424 - T 100 -11 -5.7946 | TCGGCAATAAAAAAA CCGCATGCAG GGAG CCACATGCGG TTGAGCAAACTTAAG Shewmr4_2885 3446509 - 3443486 - | TonB-dependent receptor TERM 4296 3444288 - 3444276 - G 76 -7.7 -4.3467 | ACCGCCAGATTAAAA CCTTC TAG GAAGG CGGGCGCCATGGTAA TERM 4297 3445893 - 3445905 + g 70 -9.1 -3.53012 | GTGGTTTCGCGGCCA CCACC TTC GGTGG TTTCGCCGCCACGGG TERM 4298 3447261 - 3447288 + G 76 -8.4 -4.26903 | gap 1 GGCTGGTTCTCGGCG GCTGCGGC-AGCG CAG TGCTTGCAGCAGC TTTTCCTGAGGTGGG Shewmr4_2886 3447200 - 3447895 + | aquaporin Z TERM 4299 3447902 - 3447934 + F 95 -9.3 -4.56597 | gap 2, opp_overlap 3447910, overlap 3447907 3447910 GCTAAGTAATTCCCC GCTAGCAACAGCGCC CTCGC GGCGCTGTTG-T-GC TTTTTCAAACCCCGC TERM 4300 3447907 - 3447931 + F 100 -15.8 -3.23708 | opp_overlap 3447910, overlap 3447902 3447910 GTAATTCCCCGCTAG CAACAGCGCC CTCGC GGCGCTGTTG TGCTTTTTCAAACCC TERM 4301 3447928 - 3447910 - f 84 -11.7 -3.14211 | opp_overlap 3447910 3447907 3447902 ATTCCCCGCTAGCAA CAGCGCC CTCGC GGCGCTG TTGTGCTTTTTCAAA TERM 4302 3447910 - 3447928 + F 95 -11.7 -3.75505 | opp_overlap 3447910, overlap 3447907 3447902 ATTCCCCGCTAGCAA CAGCGCC CTCGC GGCGCTG TTGTGCTTTTTCAAA Shewmr4_2887 3448051 - 3448431 + | hypothetical protein Shewmr4_2888 3448450 - 3448905 + | hypothetical protein TERM 4303 3448913 - 3448932 + T 70 -7.8 -3.58269 | TGAATTAACTCCAAT GCAACGCG ATTA CGCCTTGC TTTGCCAATAACTTG TERM 4304 3448989 - 3448973 - T 100 -10.1 -5.54885 | opp_overlap 3448973 AAGACCAACAAAAAA GCCGTCA TCT CGACGGC TTTTTTTATCTTCTA TERM 4305 3448973 - 3448989 + T 100 -9.4 -5.84432 | opp_overlap 3448973 AAGACCAACAAAAAA GCCGTC ATCTC GACGGC TTTTTTTATCTTCTA Shewmr4_2889 3449384 - 3449034 - | iron-sulfur cluster insertion protein ErpA Shewmr4_2890 3450183 - 3449377 - | hypothetical protein TERM 4306 3450637 - 3450650 + G 70 -2.3 -5.0133 | opp_overlap 3450626 3450625, overlap 3450624 3450638 AAATCCCGTTGCAAT CTGCC GCGG GGCAA TTTTTTCAAGCGCTG TERM 4307 3450931 - 3450942 + G 78 -5.8 -4.79223 | TTTGTGGTGCGGTTT CCAG CCAG CTGG TTTTTGGTAATGTGC TERM 4308 3451649 - 3451638 - g 100 -7.2 -5.36441 | GCGCTACAGAAAAAA GGCG TGCG CGCC CTGATGGATAAACGC Shewmr4_2891 3450258 - 3451982 + | Cl- channel, voltage-gated family protein Shewmr4_2892 3452173 - 3453192 + | aspartate carbamoyltransferase TERM 4309 3453197 - 3453181 - f 75 -8.7 -3.6682 | opp_overlap 3453181 TGGTATTCACGTAAA GCCGATC GCT AATCGGC TACTTACTTTAAGGA Shewmr4_2893 3453219 - 3454511 + | glutamate-1-semialdehyde 2,1-aminomutase TERM 4310 3454555 - 3454526 - f 73 -7.1 -4.1721 | opp_overlap 3454532, overlap 3454528 3454532 AGCGATAGCTTAAAA CACTAAGGGACGC ATGA GCGTCCCTTTTTA TTGCTTGGCGTTTGC TERM 4311 3454532 - 3454549 + F 100 -12.7 -5.1963 | opp_overlap 3454528 3454526 3454532 AGCTTAAAACACTAA GGGACGC ATGA GCGTCCC TTTTTATTGCTTGGC TERM 4312 3454549 - 3454532 - f 100 -12.7 -3.54181 | opp_overlap 3454532, overlap 3454528 3454526 AGCTTAAAACACTAA GGGACGC ATGA GCGTCCC TTTTTATTGCTTGGC TERM 4313 3454884 - 3454894 + F 75 -5.4 -4.82901 | overlap 3454871 3454869 GCCCAGTCAATATTT TGAC CTG GTCA TTTTTGTGACACAGC TERM 4314 3455132 - 3455118 - f 76 -2.8 -5.3104 | TCATTAAAAATAAAA TAGTGT TTA ACGCTA AAAACCTATCGCTTT TERM 4315 3455526 - 3455542 + G 74 -4.3 -4.8048 | opp_overlap 3455526 3455527, overlap 3455528 AAAACTTGCTCGAAA TTGCCAC CCT GTGGCTG TTTTTGATGTCGACA TERM 4316 3455528 - 3455540 + G 77 -9.1 -4.02302 | opp_overlap 3455527 3455526, overlap 3455526 AACTTGCTCGAAATT GCCAC CCT GTGGC TGTTTTTGATGTCGA Shewmr4_2894 3455267 - 3456577 + | citrate transporter TERM 4317 3456595 - 3456624 + T 100 -15.9 -3.72576 | opp_overlap 3456595 3456602, overlap 3456602 TTTGATTTTAATCGA TAAAAAAGGCGCC ATTC GGCGCCTTTTTTG TTTGCTACAGCACAG TERM 4318 3456624 - 3456595 - T 91 -13.7 -2.53876 | opp_overlap 3456595 3456602, overlap 3456602 TTTGATTTTAATCGA TAAAAAAGGCGCC ATTC GGCGCCTTTTTTG TTTGCTACAGCACAG TERM 4319 3456617 - 3456602 - T 100 -11.8 -5.31456 | opp_overlap 3456602 3456595, overlap 3456595 TTAATCGATAAAAAA GGCGCC ATTC GGCGCC TTTTTTGTTTGCTAC TERM 4320 3456602 - 3456617 + T 100 -11.8 -5.68438 | opp_overlap 3456595 3456602, overlap 3456595 TTAATCGATAAAAAA GGCGCC ATTC GGCGCC TTTTTTGTTTGCTAC Shewmr4_2895 3457773 - 3456640 - | general secretion pathway protein B Shewmr4_2896 3459461 - 3457773 - | peptidoglycan binding domain-containing protein TERM 4321 3458840 - 3458822 - G 100 -10.2 -4.59773 | CTTTACGGGTAAAAA GCGGTTCG AAA CGACCCGC CACCTGTAAACGGTG TERM 4322 3459501 - 3459487 - H 71 -5 -4.74504 | ATCCTAAGCTAAAAA TAACGC CCC ACGTTA AAACGTCCCAATGAT TERM 4323 3460044 - 3460054 + G 74 -8.2 -4.0896 | opp_overlap 3460041 CCACTGAGAGTATTA CGGG TTG CCCG TTTTGCCGCACGTTT TERM 4324 3460391 - 3460374 - g 70 -3.3 -4.85129 | gap 1, opp_overlap 3460374, overlap 3460376 ATGACAGAGGAAAAA GCCGTGCG CTT CGC-CGCC TTAGTGCACGATCTA Shewmr4_2897 3459636 - 3460886 + | metal dependent phosphohydrolase Shewmr4_2898 3461121 - 3461387 + | major outer membrane lipoprotein, putative Shewmr4_2899 3462850 - 3462011 - | rRNA (guanine-N(1)-)-methyltransferase TERM 4325 3462916 - 3462888 - R 78 -9 -3.90048 | opp_overlap 3462894, overlap 3462894 CCGCGCCTAAAAACA CAAAAATCGGGT ACTAG ACCCGATTTTTT AGCCATGGCGCCTCT TERM 4326 3462894 - 3462910 + r 95 -8 -5.03314 | opp_overlap 3462888 3462894 CTAAAAACACAAAAA TCGGGT ACTAG ACCCGA TTTTTTAGCCATGGC TERM 4327 3462910 - 3462894 - R 100 -8 -5.36364 | opp_overlap 3462894, overlap 3462888 CTAAAAACACAAAAA TCGGGT ACTAG ACCCGA TTTTTTAGCCATGGC Shewmr4_2900 3463735 - 3462935 - | undecaprenyl pyrophosphate phosphatase Shewmr4_2901 3464263 - 3463754 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Shewmr4_2902 3464664 - 3464314 - | dihydroneopterin aldolase Shewmr4_2903 3464903 - 3465514 + | putative glycerol-3-phosphate acyltransferase PlsY TERM 4328 3465657 - 3465641 - T 100 -12.3 -6.25741 | opp_overlap 3465641 AAACAATAAAAAAAA CAGCGCA TCA TGCGCTG TTTTTTATTGTTCTT TERM 4329 3465641 - 3465657 + T 100 -12.3 -5.70522 | opp_overlap 3465641 AAACAATAAAAAAAA CAGCGCA TCA TGCGCTG TTTTTTATTGTTCTT Shewmr4_2904 3466706 - 3465690 - | O-sialoglycoprotein endopeptidase TERM 4330 3465829 - 3465819 - G 76 -6.8 -4.46212 | GTTGTCAGTACAAAA CTCG CCG CGAG GATAATAAACTCGGC rpsU 3466921 - 3467136 + | 30S ribosomal protein S21 TERM 4331 3467126 - 3467112 - f 74 -7.8 -4.07568 | opp_overlap 3467112 GCTTTCTCGCGAAAA CGCACG TCG CGTACG TTTATACTAATCTCT Shewmr4_2906 3467143 - 3467586 + | GatB/Yqey domain-containing protein TERM 4332 3467630 - 3467607 - f 93 -12.4 -3.21912 | opp_overlap 3467607, overlap 3467610 GTTTCAATGTATGAA CAAGCCGTGC CTAT GCGCGGCTTG TTTGTTTAAATTCGC TERM 4333 3467607 - 3467630 + F 100 -14.6 -4.50159 | opp_overlap 3467607 3467610 GTTTCAATGTATGAA CAAGCCGTGC CTAT GCGCGGCTTG TTTGTTTAAATTCGC TERM 4334 3467627 - 3467610 - f 75 -8.3 -3.75105 | opp_overlap 3467607, overlap 3467607 TCAATGTATGAACAA GCCGTGC CTAT GCGCGGC TTGTTTGTTTAAATT Shewmr4_2907 3467670 - 3469394 + | DNA primase TERM 4335 3471309 - 3471273 - g 74 -9.6 -3.59247 | gap 1, overlap 3471276 GAAGAAGTGGGTAAA CAATTTGACGTGACCCG TGAA CGTATC-CGTCAAATTG AGGCGAAAGCCCTGC Shewmr4_2908 3469521 - 3471380 + | RNA polymerase, sigma 70 subunit, RpoD TERM 4336 3471403 - 3471419 + T 100 -15.1 -5.15167 | opp_overlap 3471390 AAGCTTAATCCCCAA GCCCCGC CTA GCGGGGC TTTTTATTAGTGCTC TERM 4337 3471759 - 3471776 + T 100 -9.9 -5.4251 | opp_overlap 3471759 CAATTCAACAAAAAA GCCCATT TAAA AATGGGC TTTTTTGTATCTGCA TERM 4338 3471776 - 3471759 - T 100 -9.9 -5.5074 | opp_overlap 3471759 CAATTCAACAAAAAA GCCCATT TAAA AATGGGC TTTTTTGTATCTGCA TERM 4339 3471911 - 3471877 - T 89 -6.4 -5.39755 | opp_overlap 3471881 3471901, overlap 3471881 CAGAACCAGAAAAAA TAAAGGCACTAAGCGG GAT CCACTTAGCACCTTGT TATCACTTATATCTG TERM 4340 3471907 - 3471881 - T 100 -11.6 -5.1471 | opp_overlap 3471881 3471901, overlap 3471877 ACCAGAAAAAATAAA GGCACTAAGCGG GAT CCACTTAGCACC TTGTTATCACTTATA Shewmr4_2909 3474082 - 3471962 - | methyl-accepting chemotaxis sensory transducer Shewmr4_2910 3474502 - 3476052 + | amino acid/peptide transporter TERM 4341 3476090 - 3476115 + F 100 -14.1 -5.29782 | gap 1, opp_overlap 3476090 TGTGAGCGATAAAAA CTGCCGACAAGC CTT GCTTG-CGGCAG TTTTTTATACCTATG TERM 4342 3476115 - 3476090 - f 100 -14.1 -4.87665 | gap 1, opp_overlap 3476090 TGTGAGCGATAAAAA CTGCCGACAAGC CTT GCTTG-CGGCAG TTTTTTATACCTATG Shewmr4_2911 3476422 - 3477468 + | luciferase family protein TERM 4343 3477521 - 3477477 - T 100 -14.6 -3.60792 | gap 1, opp_overlap 3477481 3477492, overlap 3477480 3477492 CTCTTAAGCGTTAAA CCACGCCATAAAAAATCCCGC CTAA GCGGGATTTTTTATGGC-TAT TAACCTTTTAACACG TERM 4344 3477519 - 3477480 - T 100 -21 -2.92667 | opp_overlap 3477481 3477492, overlap 3477477 3477492 TTAAGCGTTAAACCA CGCCATAAAAAATCCCGC CTAA GCGGGATTTTTTATGGCT ATTAACCTTTTAACA TERM 4345 3477481 - 3477518 + T 100 -24.5 -3.15366 | opp_overlap 3477480 3477477 3477492, overlap 3477492 TAAGCGTTAAACCAC GCCATAAAAAATCCCGC CTAA GCGGGATTTTTTATGGC TATTAACCTTTTAAC TERM 4346 3477492 - 3477507 + T 100 -10.4 -5.30686 | opp_overlap 3477480 3477477 3477492, overlap 3477481 CCACGCCATAAAAAA TCCCGC CTAA GCGGGA TTTTTTATGGCTATT TERM 4347 3477507 - 3477492 - T 100 -10.4 -5.26316 | opp_overlap 3477492 3477481, overlap 3477480 3477477 CCACGCCATAAAAAA TCCCGC CTAA GCGGGA TTTTTTATGGCTATT Shewmr4_2912 3478798 - 3477521 - | 4-aminobutyrate aminotransferase Shewmr4_2913 3480349 - 3478901 - | succinate semialdehyde dehydrogenase Shewmr4_2914 3481692 - 3480406 - | FAD dependent oxidoreductase TERM 4348 3481915 - 3481887 - R 91 -13.2 -2.87931 | opp_overlap 3481888 TGGAGGGCTGAGAGA TGGATGGCCTTG GCGAT CAAGGCCATCCT TTTAGCGAGAGAAGA TERM 4349 3481888 - 3481914 + r 100 -17.4 -4.07568 | opp_overlap 3481887 GGAGGGCTGAGAGAT GGATGGCCTTGG CGA TCAAGGCCATCC TTTTAGCGAGAGAAG Shewmr4_2915 3482786 - 3481971 - | binding-protein-dependent transport systems inner membrane component Shewmr4_2916 3483688 - 3482783 - | binding-protein-dependent transport systems inner membrane component TERM 4350 3483354 - 3483332 - G 84 -10.6 -4.00445 | opp_overlap 3483338 CATCACCAATAACAA CAGCACGGTT TGC AACCTTGCTG GCGCACGGGCAATGG Shewmr4_2917 3484821 - 3483685 - | spermidine/putrescine ABC transporter ATPase subunit TERM 4351 3484609 - 3484593 - G 72 -3.5 -4.88736 | opp_overlap 3484594, overlap 3484594 CACCATCGAGAAAAA TCCGTCC AGA GGTCGGT CTCTCGAACCCCGCG TERM 4352 3484950 - 3484976 + r 76 -10.8 -2.6563 | opp_overlap 3484953, overlap 3484947 3484947 ATGTCTGTGCGATTA AAAGGGGCAAGC AAT GCTTGCCCCATC TCGATTATTGGCCAG TERM 4353 3484973 - 3484953 - R 100 -16.9 -4.25104 | opp_overlap 3484950 3484947 3484947 TCTGTGCGATTAAAA GGGGCAAGC AAT GCTTGCCCC ATCTCGATTATTGGC Shewmr4_2918 3486144 - 3484981 - | extracellular solute-binding protein TERM 4354 3486707 - 3486689 - R 71 -3.1 -5.06816 | overlap 3486691 3486698 AGTTTTGAACAAAAA CAGTGCA AATTA CACACTG AGTAACAGGAACTCA Shewmr4_2919 3488053 - 3486698 - | L-glutamine synthetase TERM 4355 3487225 - 3487244 + g 85 -7.2 -4.77986 | ATGGGCTTTGAGTAC CGTCTTCA TTGG TGAAGATG TTTTTGCCTGTTTCC TERM 4356 3487662 - 3487672 + g 82 -6.8 -4.79223 | opp_overlap 3487660 3487661, overlap 3487660 3487659 TCAGGTGCAATAACT GGCT CCC AGCC TTTTTGCTCGTATAG Shewmr4_2920 3488816 - 3488055 - | peptidase C26 TERM 4357 3488766 - 3488754 - G 71 -7.7 -4.01737 | opp_overlap 3488753 ACCAACAATATTAAA GGGAT GTG ATCCC AATTGTTGATTACAC Shewmr4_2921 3489835 - 3489209 - | XRE family transcriptional regulator TERM 4358 3489514 - 3489538 + g 78 -5.7 -4.76041 | overlap 3489517 CTGTACCTATATCGA GGAGTTCATCG GAG CGATAAACTAC TTTTTGCTCACTCTC Shewmr4_2922 3489992 - 3491299 + | FAD dependent oxidoreductase Shewmr4_2923 3491856 - 3491344 - | hypothetical protein Shewmr4_2924 3492798 - 3491941 - | 3-mercaptopyruvate sulfurtransferase TERM 4359 3492258 - 3492241 - G 82 -8.3 -4.57073 | opp_overlap 3492245 CACTTGGCCGAAAAA GCGCGCG GCGC CGCGGGC ATCGATAATCGCGCT TERM 4360 3492364 - 3492342 - G 76 -8.4 -4.16943 | opp_overlap 3492345 GCTGATATTCCAAAA CGGCAGTGAG TTC CTCACTATCG CTTGCACCATAATCT Shewmr4_2925 3493339 - 3492944 - | rare lipoprotein A TERM 4361 3493298 - 3493278 - G 77 -9.7 -3.8062 | overlap 3493290 GAATGGGTAGAAGAA CACCCTGAC AAG GCCAAGGTG ACTAGCAGCATTAAG TERM 4362 3493485 - 3493451 - R 81 -4.4 -5.37345 | gap 1, overlap 3493455 GTTAACCAGAAAAAA TAAAGCCCCTTT-CG AATCGG CGTAAAGAGGCTTGA GAGGGAGTCAAACGA TERM 4363 3493481 - 3493455 - R 81 -5.2 -5.1471 | gap 1, overlap 3493451 ACCAGAAAAAATAAA GCCCCTTT-CG AATCGG CGTAAAGAGGC TTGAGAGGGAGTCAA Shewmr4_2926 3494998 - 3493502 - | aldehyde dehydrogenase (acceptor) TERM 4364 3494122 - 3494142 + g 79 -13.9 -2.75844 | opp_overlap 3494111 3494116, overlap 3494124 TAAAGGCAATGGCTT CGGCGGCCG CCA CCGCCGCCG CTTTAAGATCGGGCG TERM 4365 3494124 - 3494143 + g 77 -10.6 -3.59979 | opp_overlap 3494111 3494116, overlap 3494122 AAGGCAATGGCTTCG GCGGCCGC CACC GCCGCCGC TTTAAGATCGGGCGC TERM 4366 3494243 - 3494253 + g 76 -3.2 -5.06414 | CGCATAAATCATTAA TTGC TTA GCGA TTTTTGTTGAGCCAG Shewmr4_2927 3495279 - 3496619 + | beta alanine--pyruvate transaminase TERM 4367 3497470 - 3497506 + G 74 -9.9 -3.51161 | ATCAAGCGGTGAGTG CCCTCATGGGCGCCGCC TAT GGCAGCGCCGGCGAGCG TTGTATGGCCATTTC Shewmr4_2928 3496671 - 3498161 + | methylmalonate-semialdehyde dehydrogenase [acylating] TERM 4368 3498449 - 3498459 + G 76 -6.8 -4.48713 | CACAAACCTTCAGTG TCGG CGA CCGA TTTATTATTCCTGCG Shewmr4_2929 3498178 - 3498543 + | protein of unknown function DUF861, cupin_3 Shewmr4_2930 3498728 - 3499450 + | hypothetical protein TERM 4369 3499475 - 3499490 + T 100 -10.4 -5.09225 | opp_overlap 3499475 TGCAATTACCAAAAA GCCCTC TGTT GAGGGC TTTTTTACATCGCGT TERM 4370 3499490 - 3499475 - T 100 -10.4 -4.81083 | opp_overlap 3499475 TGCAATTACCAAAAA GCCCTC TGTT GAGGGC TTTTTTACATCGCGT Shewmr4_2931 3500813 - 3499515 - | glucose/galactose transporter TERM 4371 3500356 - 3500343 - G 70 -8.1 -3.79162 | opp_overlap 3500344, overlap 3500339 TGCAGAGAAAACTAA GGGTG CAAT CACCC CTGCACCTTTATTCA TERM 4372 3500988 - 3500977 - R 78 -4.4 -5.23765 | opp_overlap 3500977 CAAACAACACAAAAA GACA ACGC TGTC ATTTGCGATTTAGCC TERM 4373 3501128 - 3501107 - R 100 -8 -5.72622 | opp_overlap 3501107 GCTAGAAATAAAAAA GCCACAGA GGTGAG TCTGCGGC TTTGAAAAAAATCTG Shewmr4_2932 3502340 - 3501153 - | hypothetical protein TERM 4374 3502451 - 3502416 - R 100 -12.7 -5.88565 | TGTACAATAAAAAAA CTTAGCCCCTGTCAT CAAAAT ACGACAAGGGCCAAG GTTAACGCTTTACTG Shewmr4_2933 3503615 - 3502479 - | N-acetylglucosamine 6-phosphate deacetylase TERM 4375 3503486 - 3503467 - G 71 -5.6 -4.45083 | overlap 3503468 TGTACATCGATAAAA CCTGGCAC TAGG GTGCCTGA GTAGCGAATTTCCTT Shewmr4_2934 3504657 - 3503659 - | glutamine--fructose-6-phosphate transaminase (isomerizing) Shewmr4_2935 3505624 - 3504716 - | ATPase, BadF/BadG/BcrA/BcrD type TERM 4376 3505736 - 3505723 - R 75 -5.3 -4.80882 | opp_overlap 3505723 ATGTTACAGTAAAAA TGACA GCGT TGTCA TTTATTTTTTGAAGC TERM 4377 3505723 - 3505736 + r 78 -5.3 -5.04249 | opp_overlap 3505723 ATGTTACAGTAAAAA TGACA GCGT TGTCA TTTATTTTTTGAAGC TERM 4378 3505832 - 3505805 - R 100 -11.5 -5.63236 | overlap 3505830 AGTGAAAAAGAAAAA GGCTGTATTTT TATTTT AAAATACAGCC AGATATAGCTTTTTA Shewmr4_2936 3508538 - 3505848 - | Beta-N-acetylhexosaminidase TERM 4379 3508104 - 3508116 + g 70 -3.3 -4.8543 | CCACAACTCACCGCG GAACC TTA GGGTC TTTTTCTCGCCCTTG Shewmr4_2937 3510054 - 3508567 - | methyl-accepting chemotaxis sensory transducer TERM 4380 3509498 - 3509516 + g 71 -6 -4.30719 | opp_overlap 3509498 AATCTGTGGCTTAAA TCGCCA TCACCAT TGGCGA TTTCTTCTAACGCGG Shewmr4_2938 3511040 - 3510054 - | hypothetical protein TERM 4381 3511174 - 3511145 - H 100 -18.7 -5.47218 | opp_overlap 3511141 3511168, overlap 3511167 CTCTACCTAAAAAAA TGGCTGGGCACTG CTTA CAGTACCCAGCCA ACGCTAGTTTCTGGG Shewmr4_2939 3511531 - 3512433 + | hypothetical protein Shewmr4_2940 3513130 - 3512471 - | hypothetical protein Shewmr4_2941 3514677 - 3513142 - | tryptophan halogenase TERM 4382 3514702 - 3514719 + r 100 -11.3 -4.13767 | opp_overlap 3514702 CTCATCTATAAAAAA GCCCAGT CGAG ACTGGGC TTTTAGACTAAAACA TERM 4383 3514719 - 3514702 - R 100 -11.3 -5.28176 | opp_overlap 3514702 CTCATCTATAAAAAA GCCCAGT CGAG ACTGGGC TTTTAGACTAAAACA Shewmr4_2942 3517403 - 3514740 - | TonB-dependent receptor TERM 4384 3517333 - 3517276 - G 74 -11.3 -3.03159 | gap 1, opp_overlap 3517283 3517285, overlap 3517322 TCAATCTTTTCAATA TTTTCAGGTACCGCTGCTGCAGCGGCTG CTT CAGCCTCTGCAGCAACAGCAC-TGATTG AAACAGCGCTGCCGA TERM 4385 3517283 - 3517327 + g 95 -17.1 -2.70932 | opp_overlap 3517276 3517322, overlap 3517285 TTTCAATATTTTCAG GTACCGCTGCTGCAGCGGCTG CTT CAGCCTCTGCAGCAACAGCAC TGATTGAAACAGCGC Shewmr4_2943 3517830 - 3518846 + | LacI family transcription regulator TERM 4386 3518864 - 3518906 + T 100 -18.9 -3.2048 | gap 1, opp_overlap 3518848 3518847 3518870 3518875, overlap 3518870 3518875 TTCAGCCCTGCAAGG CT-AAAACAAAACAGAGAGC CAAG GCTCTCTGTTTTGTTTTTAG TTAATGCAATTTCAG TERM 4387 3518899 - 3518870 - T 100 -18.1 -4.19238 | opp_overlap 3518864 3518870 3518875, overlap 3518875 CCTGCAAGGCTAAAA CAAAACAGAGAGC CAAG GCTCTCTGTTTTG TTTTTAGTTAATGCA TERM 4388 3518870 - 3518899 + T 100 -18.1 -4.90266 | opp_overlap 3518870 3518875, overlap 3518864 3518875 CCTGCAAGGCTAAAA CAAAACAGAGAGC CAAG GCTCTCTGTTTTG TTTTTAGTTAATGCA TERM 4389 3518875 - 3518894 + T 100 -12.2 -5.34655 | opp_overlap 3518875 3518870, overlap 3518870 3518864 AAGGCTAAAACAAAA CAGAGAGC CAAG GCTCTCTG TTTTGTTTTTAGTTA TERM 4390 3518894 - 3518875 - T 100 -12.2 -5.10163 | opp_overlap 3518870 3518864 3518875, overlap 3518870 AAGGCTAAAACAAAA CAGAGAGC CAAG GCTCTCTG TTTTGTTTTTAGTTA Shewmr4_2944 3520196 - 3518907 - | NADH dehydrogenase TERM 4391 3520370 - 3520357 - R 100 -9.5 -5.5604 | opp_overlap 3520355 3520353 3520357 TTAAGCAACAAAAAA GGGCC TAAT GGCCC TCTCTTTAAACGGAT TERM 4392 3520357 - 3520370 + r 74 -9.5 -3.24411 | opp_overlap 3520357, overlap 3520355 3520353 TTAAGCAACAAAAAA GGGCC TAAT GGCCC TCTCTTTAAACGGAT Shewmr4_2945 3520727 - 3520389 - | nitrogen regulatory protein P-II Shewmr4_2946 3520965 - 3521477 + | methylation site containing protein TERM 4393 3521679 - 3521697 + G 80 -10.4 -3.70773 | TGAACTGATGGTTAC TATTGCAG TGG CTGCAATA TTATTAACTATCGGA Shewmr4_2947 3521632 - 3522114 + | methylation site containing protein Shewmr4_2948 3522442 - 3522143 - | hypothetical protein Shewmr4_2949 3522882 - 3522439 - | methylation site containing protein TERM 4394 3522636 - 3522654 + g 71 -7.4 -4.04206 | overlap 3522638 CCGTATAATACCCAT GCTCCGTT TCA AACGGATC TTTATCTAAACCTAG Shewmr4_2950 3526424 - 3522891 - | type IV pilin biogenesis protein, putative TERM 4395 3524494 - 3524458 - G 82 -6.7 -4.75219 | opp_overlap 3524459 3524471, overlap 3524459 3524460 TAATCACTAACAAAA CTTGTAGCAGTAATATT AAC AATATTACTGCCACTCA ATGATTTAAGCTTAC TERM 4396 3524492 - 3524460 - G 70 -11.5 -2.65344 | opp_overlap 3524459 3524471, overlap 3524459 3524458 ATCACTAACAAAACT TGTAGCAGTAATATT AAC AATATTACTGCCACT CAATGATTTAAGCTT Shewmr4_2951 3526880 - 3526428 - | type IV pilus assembly protein PilX Shewmr4_2952 3527906 - 3526893 - | prepilin-type cleavage/methylation-like protein Shewmr4_2953 3528473 - 3527907 - | type IV pilus modification protein PilV TERM 4397 3528630 - 3528674 + r 100 -21.9 -3.35813 | opp_overlap 3528638 3528645, overlap 3528632 3528638 3528645 TTGTATTTGGTGAAT TTTGATAATAAAAAAGAGGCC ATT GGCCTCTTTTTTATTATCATA TTGATTCGAATGAAC TERM 4398 3528632 - 3528672 + r 100 -24.5 -3.24825 | opp_overlap 3528638 3528645, overlap 3528630 3528638 3528645 GTATTTGGTGAATTT TGATAATAAAAAAGAGGCC ATT GGCCTCTTTTTTATTATCA TATTGATTCGAATGA TERM 4399 3528666 - 3528638 - R 100 -17.7 -3.33261 | opp_overlap 3528632 3528630 3528638 3528645, overlap 3528645 GGTGAATTTTGATAA TAAAAAAGAGGCC ATT GGCCTCTTTTTTA TTATCATATTGATTC TERM 4400 3528638 - 3528666 + r 100 -17.7 -3.54602 | opp_overlap 3528638 3528645, overlap 3528632 3528630 3528645 GGTGAATTTTGATAA TAAAAAAGAGGCC ATT GGCCTCTTTTTTA TTATCATATTGATTC TERM 4401 3528645 - 3528659 + r 100 -11.4 -5.58179 | opp_overlap 3528645 3528638, overlap 3528638 3528632 3528630 TTTGATAATAAAAAA GAGGCC ATT GGCCTC TTTTTTATTATCATA TERM 4402 3528659 - 3528645 - R 100 -11.4 -5.55769 | opp_overlap 3528638 3528632 3528630 3528645, overlap 3528638 TTTGATAATAAAAAA GAGGCC ATT GGCCTC TTTTTTATTATCATA Shewmr4_2954 3529645 - 3528689 - | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase TERM 4403 3529466 - 3529456 - G 74 -2.4 -5.06816 | opp_overlap 3529456 ACTCTTCAACAAAAA CGGC ACC GCGG TCCTTCAGATTTTGC Shewmr4_2955 3530069 - 3529647 - | peptidylprolyl isomerase, FKBP-type Shewmr4_2956 3530581 - 3530069 - | signal peptidase II TERM 4404 3530166 - 3530152 - G 76 -5.6 -4.82901 | opp_overlap 3530152 CTGCGCCGATAAAAA TCGCGG AAT CGGCGA TATTAAAGGCGGGAT TERM 4405 3530465 - 3530451 - G 89 -2.1 -5.72207 | GTGAAATTAAAAAAA GGTAA TAACT TCACC GATTCGAACAAATCA Shewmr4_2957 3533413 - 3530591 - | isoleucyl-tRNA synthetase Shewmr4_2958 3534381 - 3533446 - | riboflavin kinase / FMN adenylyltransferase Shewmr4_2959 3536006 - 3534447 - | integral membrane protein MviN TERM 4406 3536323 - 3536306 - g 74 -7.7 -4.19238 | overlap 3536286 GCTTCAATCTGAAAA GCGTCGT CAGC ACAACGC CAGCCGTCGCTCAAT TERM 4407 3536418 - 3536395 - g 76 -6.8 -4.46212 | gap 1 CTGGCGATCACAAAA CAGCAACCGAA GCT TTCG-CTGCTG CACAACCAATCGTTG rpsT 3536259 - 3536525 + | 30S ribosomal protein S20 TERM 4408 3536571 - 3536539 - T 90 -11.6 -3.73072 | gap 1, opp_overlap 3536540 3536548, overlap 3536548 AATTTTCTTAGTAAA TA-AAAAAAACCGGC AATT GCCGGTTTTTTTATA TCTGATGATTACCAT TERM 4409 3536540 - 3536569 + T 93 -12.3 -2.98015 | opp_overlap 3536539 3536548, overlap 3536548 ATTTTCTTAGTAAAT AAAAAAAACCGGC AATT GCCGGTTTTTTTA TATCTGATGATTACC TERM 4410 3536548 - 3536561 + T 100 -9.5 -5.76633 | opp_overlap 3536539 3536548, overlap 3536540 AGTAAATAAAAAAAA CCGGC AATT GCCGG TTTTTTTATATCTGA TERM 4411 3536561 - 3536548 - T 100 -9.5 -6.25578 | opp_overlap 3536548 3536540, overlap 3536539 AGTAAATAAAAAAAA CCGGC AATT GCCGG TTTTTTTATATCTGA Shewmr4_2961 3536882 - 3536586 - | ArsR family transcriptional regulator TERM 4412 3537482 - 3537471 - g 71 -5.8 -4.30441 | opp_overlap 3537471 CCAGAAGATGTAAAA GGCA AGAT TGCC TTTATCGACCAAAAG TERM 4413 3537958 - 3537978 + G 76 -11.9 -2.92613 | opp_overlap 3537957 3537956, overlap 3537956 ATCTTCCGCAAAAGC CCGCTCGTA CGG TACGAGTGG TACTTTACGCTGCCG Shewmr4_2962 3537018 - 3538424 + | peptidase M28 TERM 4414 3538450 - 3538479 + T 100 -16.7 -3.56092 | opp_overlap 3538456, overlap 3538456 TAAATCATTCACTCA TAAAAAGAGCAGC CTAA GCTGCTCTTTTTA TTTAAACCGTAATAG TERM 4415 3538456 - 3538473 + T 100 -11.3 -5.27335 | opp_overlap 3538456, overlap 3538450 ATTCACTCATAAAAA GAGCAGC CTAA GCTGCTC TTTTTATTTAAACCG TERM 4416 3538473 - 3538456 - T 100 -11.3 -4.88067 | opp_overlap 3538456 3538450 ATTCACTCATAAAAA GAGCAGC CTAA GCTGCTC TTTTTATTTAAACCG Shewmr4_2963 3539269 - 3538496 - | hypothetical protein TERM 4417 3539046 - 3539032 - G 76 -2.7 -5.0925 | overlap 3539025 3539033 CCCGAAAAGCAAAAA TCGCC TGTTT GGCGT TGGCAATACTGTAGT TERM 4418 3539102 - 3539082 - G 71 -6.1 -4.2828 | gap 1, opp_overlap 3539082 3539081 GTCCACTCACCAAAA CGCGCGGC ATTTAA GCC-CGCG ATGTTATCGCTCACC TERM 4419 3539326 - 3539344 + r 75 -6 -4.62069 | opp_overlap 3539326 ACAGGTATAAAAAAA CCACGT ACGGATG ACGTGG TTTTTCCGATAGCAC TERM 4420 3539344 - 3539326 - R 95 -6 -5.65177 | opp_overlap 3539326 ACAGGTATAAAAAAA CCACGT ACGGATG ACGTGG TTTTTCCGATAGCAC Shewmr4_2964 3540844 - 3539378 - | amino acid carrier protein TERM 4421 3539610 - 3539634 + g 74 -7.2 -4.18018 | AGCCCCATAGACACG TCAGCTAAGT TCCAC ACTAAGCTGA TTTTGGCTACAGCAC TERM 4422 3543292 - 3543280 - g 80 -3.4 -5.34381 | AAATTTAAAGAAAAA CCAT GGATG ATGG ATGAAATATTTACCC Shewmr4_2965 3541276 - 3543642 + | putative phosphoketolase TERM 4423 3543700 - 3543673 - f 71 -4 -4.9072 | opp_overlap 3543677, overlap 3543674 3543677 ACAAATAAAAAACAA TTTAGGGCATCC TTCG GGATGCCCTTTT AACATTAATCAAAAA TERM 4424 3543696 - 3543677 - f 93 -13.6 -2.84096 | opp_overlap 3543677, overlap 3543674 3543673 ATAAAAAACAATTTA GGGCATCC TTCG GGATGCCC TTTTAACATTAATCA TERM 4425 3543677 - 3543696 + F 100 -13.6 -4.20696 | opp_overlap 3543677 3543674 3543673 ATAAAAAACAATTTA GGGCATCC TTCG GGATGCCC TTTTAACATTAATCA TERM 4426 3543728 - 3543716 - f 70 -2.7 -4.92777 | AACATTAATCAAAAA TAACA ACA TGCTA TTCCATAAAAAAACT Shewmr4_2966 3543881 - 3544999 + | OmpA/MotB domain-containing protein TERM 4427 3545039 - 3545022 - f 100 -11.3 -4.36729 | opp_overlap 3545022 ATTAAGAATTTAAAA GTCGCTG CTTG CAGCGAC TTTTTGTTTTTATAA TERM 4428 3545022 - 3545039 + F 100 -11.3 -5.69262 | opp_overlap 3545022 ATTAAGAATTTAAAA GTCGCTG CTTG CAGCGAC TTTTTGTTTTTATAA Shewmr4_2967 3545248 - 3546204 + | transaldolase B pgi 3546225 - 3547862 + | glucose-6-phosphate isomerase TERM 4429 3547895 - 3547868 - f 84 -11.4 -3.09681 | opp_overlap 3547874, overlap 3547874 CAAAATCTGATCGAA CAAAAAGCCAGC AATA GCTGGCTTTTTT ATTGTATCTCTTTAA TERM 4430 3547874 - 3547889 + F 100 -10.4 -5.62045 | opp_overlap 3547868 3547874 CTGATCGAACAAAAA GCCAGC AATA GCTGGC TTTTTTATTGTATCT TERM 4431 3547889 - 3547874 - f 100 -10.4 -5.10461 | opp_overlap 3547874, overlap 3547868 CTGATCGAACAAAAA GCCAGC AATA GCTGGC TTTTTTATTGTATCT Shewmr4_2969 3548079 - 3548264 + | hypothetical protein TERM 4432 3548290 - 3548318 + T 100 -14.7 -4.62336 | opp_overlap 3548292 3548298, overlap 3548292 3548298 GATAAACAGCATATA AAGAAAAAGCGCC AAT GGCGCTTTTTCTG TTTTTGCCGTCCGCT TERM 4433 3548292 - 3548316 + T 100 -17.3 -3.92746 | opp_overlap 3548292 3548298, overlap 3548290 3548298 TAAACAGCATATAAA GAAAAAGCGCC AAT GGCGCTTTTTC TGTTTTTGCCGTCCG TERM 4434 3548316 - 3548292 - T 100 -17.3 -4.15197 | opp_overlap 3548292 3548290 3548298, overlap 3548298 TAAACAGCATATAAA GAAAAAGCGCC AAT GGCGCTTTTTC TGTTTTTGCCGTCCG TERM 4435 3548298 - 3548310 + T 100 -10.5 -5.36364 | opp_overlap 3548292 3548298, overlap 3548292 3548290 GCATATAAAGAAAAA GCGCC AAT GGCGC TTTTTCTGTTTTTGC TERM 4436 3548310 - 3548298 - T 100 -10.5 -5.42975 | opp_overlap 3548298 3548292 3548290, overlap 3548292 GCATATAAAGAAAAA GCGCC AAT GGCGC TTTTTCTGTTTTTGC Shewmr4_2970 3548868 - 3548332 - | hemerythrin HHE cation binding domain-containing protein TERM 4437 3549040 - 3549084 + r 82 -5.9 -5.03961 | opp_overlap 3549041 3549046 3549063, overlap 3549042 3549046 AAATATCAGATTAAG AGTGAACAGTGAGTTAGCT AAAATGA ATCTAACTCACTGTTTATA TTTTGTTATTTACTT TERM 4438 3549042 - 3549082 + r 93 -10.7 -4.11503 | opp_overlap 3549041 3549046 3549063, overlap 3549040 3549046 ATATCAGATTAAGAG TGAACAGTGAGTTAGCT AAAATGA ATCTAACTCACTGTTTA TATTTTGTTATTTAC TERM 4439 3549046 - 3549078 + r 95 -9.3 -4.57514 | opp_overlap 3549041 3549046 3549063, overlap 3549042 3549040 CAGATTAAGAGTGAA CAGTGAGTTAGCT AAAATGA ATCTAACTCACTG TTTATATTTTGTTAT TERM 4440 3549078 - 3549046 - R 72 -9.3 -3.21062 | opp_overlap 3549046 3549042 3549040, overlap 3549041 3549063 CAGATTAAGAGTGAA CAGTGAGTTAGCT AAAATGA ATCTAACTCACTG TTTATATTTTGTTAT Shewmr4_2971 3549812 - 3549090 - | hypothetical protein TERM 4441 3549700 - 3549682 - G 70 -8.8 -3.54459 | TTAATGTCTGCCAAA TGGGCCTG TGA CAGGCGCA AAATATCTTGGTCAA Shewmr4_2972 3550458 - 3549805 - | ECF subfamily RNA polymerase sigma-24 factor Shewmr4_2973 3552329 - 3550455 - | von Willebrand factor, type A TERM 4442 3551533 - 3551545 + g 71 -7.7 -4.0896 | TCCTGAGCACCCAGT TGCTG AGT CAGCA TTTTCAAGGCAGTTT TERM 4443 3552168 - 3552179 + g 81 -5.8 -4.93877 | AAGCTCAGCCTGTTG CTCG GCGG CGAG TTTTGTTTGATCGGC Shewmr4_2974 3552543 - 3554315 + | putative sulfate transporter YchM Shewmr4_2975 3554571 - 3555062 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit Shewmr4_2976 3555062 - 3556159 + | phosphoribosylaminoimidazole carboxylase ATPase subunit TERM 4444 3556173 - 3556212 + F 76 -8 -4.08058 | opp_overlap 3556177, overlap 3556174 3556177 AACGGAGCCACGCAT ATAACTGATAAGGGAGTA TATT TGTTCCCTTATCAGTCAA TTTCTCATCTTGGTT TERM 4445 3556174 - 3556211 + F 83 -11.5 -3.0375 | opp_overlap 3556177, overlap 3556173 3556177 ACGGAGCCACGCATA TAACTGATAAGGGAGTA TATT TGTTCCCTTATCAGTCA ATTTCTCATCTTGGT TERM 4446 3556208 - 3556177 - f 73 -8.9 -3.524 | opp_overlap 3556174 3556173 3556177 GAGCCACGCATATAA CTGATAAGGGA GTATATTTGT TCCCTTATCAG TCAATTTCTCATCTT TERM 4447 3556177 - 3556208 + F 91 -13.2 -2.73268 | opp_overlap 3556177, overlap 3556174 3556173 GAGCCACGCATATAA CTGATAAGGGAGTA TATT TGTTCCCTTATCAG TCAATTTCTCATCTT TERM 4448 3556629 - 3556613 - g 74 -2.2 -5.10767 | opp_overlap 3556616 GAGCCAATATAAAAA CGAGCA TGCGT TTCTCG ACGCGCTGCTTAATA Shewmr4_2977 3556314 - 3557576 + | diguanylate cyclase with GAF sensor Shewmr4_2978 3558269 - 3557652 - | hypothetical protein Shewmr4_2979 3558887 - 3558426 - | hypothetical protein TERM 4449 3558572 - 3558586 + g 71 -7.2 -4.11216 | GCTGATGCCCTTCGA CCTTTA ACT TAAAGG TTTTAGGAGTGCGCG Shewmr4_2980 3560536 - 3558887 - | glutamate-cysteine ligase TERM 4450 3560056 - 3560070 + g 71 -5.7 -4.4261 | AACGGTAGGTTAAGC CCTTG CGATA CAAGG TTTTCATCTTACCCG TERM 4451 3560640 - 3560604 - R 100 -12.4 -4.63218 | gap 1, opp_overlap 3560601 3560595 3560608, overlap 3560605 3560608 TCTTCTGCAATAAAA CGC-AGACGGTGACAGC TAAT GCTGTCACCGTCTTACT CGTTAATACTTTAGA TERM 4452 3560639 - 3560605 - R 100 -15.9 -3.3761 | gap 1, opp_overlap 3560601 3560595 3560608, overlap 3560604 3560608 CTTCTGCAATAAAAC GC-AGACGGTGACAGC TAAT GCTGTCACCGTCTTAC TCGTTAATACTTTAG TERM 4453 3560635 - 3560608 - R 100 -20 -2.84841 | opp_overlap 3560601 3560595 3560608, overlap 3560605 3560604 CTGCAATAAAACGCA GACGGTGACAGC TAAT GCTGTCACCGTC TTACTCGTTAATACT TERM 4454 3560608 - 3560635 + r 100 -20 -3.29364 | opp_overlap 3560608 3560605 3560604, overlap 3560601 3560595 CTGCAATAAAACGCA GACGGTGACAGC TAAT GCTGTCACCGTC TTACTCGTTAATACT Shewmr4_2981 3563569 - 3560720 - | peptidase M16 domain-containing protein TERM 4455 3561688 - 3561698 + g 79 -6.8 -4.66987 | opp_overlap 3561687 CCTCGTTAAACGCAG GCTG GAA CAGC TTTTCTTCCAATATG TERM 4456 3562041 - 3562027 - G 77 -12.8 -2.73364 | opp_overlap 3562019 TCGGGACTTTAAGCA CGGGCG CCG CGCCCG TGGCTGGCATTGTTG TERM 4457 3562570 - 3562580 + g 76 -5.4 -4.83169 | GCACGGCATAACCAT CCTT CAC AAGG TTTTTGTACACGAGT Shewmr4_2982 3564136 - 3563711 - | hypothetical protein Shewmr4_2983 3564424 - 3565677 + | sodium:dicarboxylate symporter TERM 4458 3565738 - 3565711 - f 84 -11.4 -3.10701 | opp_overlap 3565717, overlap 3565702 3565717 TAAAGATTTATCCAA TAAAAAGACCGC AAAT GCGGTCTTTTTT ATTATCCGTATTTCA TERM 4459 3565732 - 3565717 - f 100 -10.4 -5.10461 | opp_overlap 3565717, overlap 3565711 TTTATCCAATAAAAA GACCGC AAAT GCGGTC TTTTTTATTATCCGT TERM 4460 3565717 - 3565732 + F 100 -10.4 -5.56673 | opp_overlap 3565717 3565711 TTTATCCAATAAAAA GACCGC AAAT GCGGTC TTTTTTATTATCCGT TERM 4461 3565951 - 3565965 + G 70 -4.2 -4.59414 | opp_overlap 3565947 TCTACATCATAGCCA TCAGCG GCA CGGTGA TTTTGCTTCTTATGC Shewmr4_2984 3565836 - 3566003 + | hypothetical protein TERM 4462 3565997 - 3566035 + T 100 -17.7 -3.60792 | opp_overlap 3566006 3566024 GCTCCTATGGTTAAC GGCTTAGAAGCCTATTG TTAGT CAATAGGCTTCTAAACC TTTACAACTTAACCA TERM 4463 3566026 - 3566006 - T 76 -9.8 -3.31322 | opp_overlap 3565997, overlap 3566024 GTTAACGGCTTAGAA GCCTATTG TTAGT CAATAGGC TTCTAAACCTTTACA Shewmr4_2985 3567174 - 3566044 - | sodium ion-translocating decarboxylase, beta subunit TERM 4464 3566535 - 3566551 + g 73 -5.2 -4.7373 | CCAGGACCATCAGTG GGAAAA TAATC TTTTCC TTTTTACTCACCTCC Shewmr4_2986 3569018 - 3567183 - | pyruvate carboxylase subunit B Shewmr4_2987 3569317 - 3569030 - | sodium pump decarboxylases, gamma subunit TERM 4465 3569843 - 3569875 + r 83 -9.2 -3.90856 | opp_overlap 3569843 3569850, overlap 3569846 3569850 GGTAAACACGAAAAA CAAAAAAGCCAGCT TGTTC AGCTGGCTTCGTTG TTTAATTAAGCGCTT TERM 4466 3569875 - 3569843 - R 100 -11.4 -4.93696 | opp_overlap 3569843 3569846 3569850, overlap 3569850 GGTAAACACGAAAAA CAAAAAAGCCAGCT TGTTC AGCTGGCTTCGTTG TTTAATTAAGCGCTT TERM 4467 3569868 - 3569850 - R 100 -10.3 -5.95286 | opp_overlap 3569846 3569843 3569850, overlap 3569843 ACGAAAAACAAAAAA GCCAGCT TGTTC AGCTGGC TTCGTTGTTTAATTA TERM 4468 3569850 - 3569868 + r 82 -10.3 -3.65446 | opp_overlap 3569850 3569843, overlap 3569846 3569843 ACGAAAAACAAAAAA GCCAGCT TGTTC AGCTGGC TTCGTTGTTTAATTA TERM 4469 3570166 - 3570178 + r 72 -6.3 -4.2586 | AGCTGTATTGAGTAC CACTT CTT AAGTG TTTGTATTCGTCTAA TERM 4470 3571380 - 3571352 - R 72 -8.1 -3.85698 | TGTGTTTTTGATAAA CAGTTGCAGCCAC CTG GTATCTGCGACTG CCGTCAGCTTAGGGA TERM 4471 3571834 - 3571850 + r 85 -9.4 -4.08546 | overlap 3571816 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 4472 3572632 - 3572644 + r 83 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4473 3573207 - 3573247 + r 84 -2.7 -5.63374 | opp_overlap 3573214 3573219 3573221 3573223, overlap 3573221 GGACTCGCCTTAGAC TTGAATATTCAAGACACTT AAA AAGTGTTTTAAGAACTCAA TTTTTTTCGTATTAA TERM 4474 3575126 - 3575148 + r 70 -7.1 -3.76952 | gap 1 GATTTAATTCTTTGA TTACTC-GCC AAAC GGCAGAGTAA TTTCGATTAACTCAA Shewmr4_2988 3575224 - 3575126 - | hypothetical protein TERM 4475 3575253 - 3575267 + r 75 -8.6 -3.80893 | TCAGCGGGTCAGGGC TGCGTA TTC TACGCA TTTCCCTTGTCGCGT TERM 4476 3575279 - 3575310 + r 82 -10.2 -3.60627 | overlap 3575272 3575289 CGCATTTCCCTTGTC GCGTCAAGGCGTTT TTGC AAACTTCTTGGCGC TTTCGAATCAACTGC TERM 4477 3575649 - 3575615 - R 93 -10.1 -4.36262 | ATATGTATAGGAAAA CGGTTCAAGAATAAC GAATG GCGACTCTTGAACCG TGGAACAGACTCATT Shewmr4_2989 3576515 - 3575697 - | CDP-diacylglycerol--serine O-phosphatidyltransferase Shewmr4_2990 3576607 - 3577071 + | hypothetical protein TERM 4478 3577185 - 3577203 + T 100 -6 -5.96894 | opp_overlap 3577185 ATAGATATAAAAAAA CCGAAG CCTGAAA CTTCGG TTTTTTTATTTAGGT TERM 4479 3577203 - 3577185 - T 100 -7.4 -5.77988 | opp_overlap 3577185 ATAGATATAAAAAAA CCGAAGCC TGA AACTTCGG TTTTTTTATTTAGGT Shewmr4_2991 3579827 - 3577254 - | ATPase Shewmr4_2992 3580734 - 3579946 - | hypothetical protein Shewmr4_2993 3581709 - 3580738 - | ribosomal large subunit pseudouridine synthase D Shewmr4_2994 3581745 - 3582593 + | putative lipoprotein TERM 4480 3582601 - 3582619 + F 100 -13.2 -5.47399 | opp_overlap 3582601 CGAACTAAGCGTAAA TGCCCCTT TAT AAGGGGCA TTTTTTTAACCTTGG TERM 4481 3582619 - 3582601 - f 100 -13.2 -3.69434 | opp_overlap 3582601 CGAACTAAGCGTAAA TGCCCCTT TAT AAGGGGCA TTTTTTTAACCTTGG TERM 4482 3583170 - 3583184 + F 100 -11.4 -5.76633 | opp_overlap 3583170 GTACCAACATTTAAA CCTCGC TAA GCGAGG TTTTTTTGTATCTGC TERM 4483 3583184 - 3583170 - f 95 -11.4 -3.77831 | opp_overlap 3583170 GTACCAACATTTAAA CCTCGC TAA GCGAGG TTTTTTTGTATCTGC Shewmr4_2995 3583325 - 3584950 + | methyl-accepting chemotaxis sensory transducer TERM 4484 3584958 - 3584984 + F 83 -10.9 -3.52396 | overlap 3584956 3584960 GACTCTAGTTCATTT TACTGGCACAG GCCTG CTGTGCCAGTC TCTTTGCTGATTATT TERM 4485 3584960 - 3584982 + F 100 -13.5 -3.32233 | overlap 3584958 3584956 CTCTAGTTCATTTTA CTGGCACAG GCCTG CTGTGCCAG TCTCTTTGCTGATTA TERM 4486 3585034 - 3585051 + F 73 -2.7 -5.1356 | overlap 3585037 AGATGACATTCCGTC TAACAGT TTTT ACTGTGA TTTTTATTGATCCAA TERM 4487 3585625 - 3585615 - g 84 -4.6 -5.28778 | ATTAGCGAGAAAAAA GCCG AGT CAGC CGTAATCACCTCGTT TERM 4488 3586010 - 3585987 - g 90 -9.6 -4.54727 | overlap 3585990 TTGCTCAAACTAAAA CACCCAAGTG CTGT CACTTGGTTG CACGCTTGCGAGCAT Shewmr4_2996 3585126 - 3586319 + | globin TERM 4489 3586387 - 3586362 - T 100 -11.9 -4.21922 | TGACTCAAAACCAAA GCCACCTTCTC ATAA GACAAGGTGGC TGAACACTTATCACA Shewmr4_2997 3587137 - 3586412 - | pseudouridine synthase, Rsu Shewmr4_2998 3587772 - 3587152 - | transcriptional regulator TERM 4490 3587415 - 3587456 + g 73 -8.7 -3.7829 | gap 1 GGCGACTGGCTATAT CCGTCATGCCG-AGCATCGC GCT GCGATACTGCTGCATGGCCG TTTGCTCCCTATGCT TERM 4491 3587830 - 3587849 + H 73 -5.2 -4.61566 | opp_overlap 3587830 CACCTTTTAACAGAA TAAATAAA GTTT TTTATTTA TTTTATCCTTTACAA Shewmr4_2999 3587919 - 3588533 + | NADPH-dependent FMN reductase Shewmr4_3000 3588584 - 3589000 + | glyoxalase/bleomycin resistance protein/dioxygenase Shewmr4_3001 3589145 - 3589615 + | hypothetical protein TERM 4492 3589638 - 3589664 + T 84 -11 -3.70902 | opp_overlap 3589643, overlap 3589643 AGCAAGCCCAAAAAC AAAAAGGCTGAA TCA TTCAGCCTTTTG TTTAACTCTGCAGAA TERM 4493 3589659 - 3589643 - T 100 -10.9 -5.61881 | opp_overlap 3589643 3589638 GCCCAAAAACAAAAA GGCTGAA TCA TTCAGCC TTTTGTTTAACTCTG TERM 4494 3589643 - 3589659 + T 100 -10.9 -4.92385 | opp_overlap 3589643, overlap 3589638 GCCCAAAAACAAAAA GGCTGAA TCA TTCAGCC TTTTGTTTAACTCTG Shewmr4_3002 3590263 - 3589694 - | GPR1/FUN34/yaaH family protein TERM 4495 3590467 - 3590457 - H 73 -2.6 -5.22289 | opp_overlap 3590457 TATTAAACATAAAAA TTAA AAA TTAA TCTTTTTAGATTCAA Shewmr4_3003 3591002 - 3591238 + | hypothetical protein TERM 4496 3591297 - 3591319 + F 100 -13.6 -5.06414 | AGCGTGTTCTGCTTA TGCCATTCAA ACC TTGAATGGCA TTTTTATTGGGGCGG Shewmr4_3004 3591592 - 3592455 + | MltA-interacting MipA family protein Shewmr4_3005 3592482 - 3592874 + | hypothetical protein Shewmr4_3006 3592874 - 3593587 + | two component transcriptional regulator TERM 4497 3593971 - 3593991 + G 83 -5.4 -5.07275 | overlap 3593973 GACCCTAGAGCCTCA CTGCGTAA TCTGT TTACGCTG TTTTTCTATCTCTCA TERM 4498 3593973 - 3593989 + G 71 -6.6 -4.15325 | overlap 3593971 CCCTAGAGCCTCACT GCGTAA TCTGT TTACGC TGTTTTTCTATCTCT TERM 4499 3594370 - 3594360 - g 76 -6.8 -4.46617 | opp_overlap 3594366 AAAAGAAATGGAAAA CCTG CTG CAGG AACTGCTGACTTACG Shewmr4_3007 3593596 - 3594864 + | periplasmic sensor signal transduction histidine kinase Shewmr4_3008 3595201 - 3594893 - | hypothetical protein Shewmr4_3009 3595360 - 3595896 + | hypothetical protein TERM 4500 3596040 - 3596060 + T 90 -11.1 -4.06502 | opp_overlap 3596040 3596041, overlap 3596041 ATAGTCAGTAAAGAA TCCGCCTTC TTA GAAGGCGGC TTTGATTTGCCCCTG TERM 4501 3596060 - 3596040 - T 90 -11.1 -4.01902 | opp_overlap 3596040 3596041, overlap 3596041 ATAGTCAGTAAAGAA TCCGCCTTC TTA GAAGGCGGC TTTGATTTGCCCCTG TERM 4502 3596041 - 3596059 + T 100 -14.6 -3.03419 | opp_overlap 3596040 3596041, overlap 3596040 TAGTCAGTAAAGAAT CCGCCTTC TTA GAAGGCGG CTTTGATTTGCCCCT TERM 4503 3596059 - 3596041 - T 100 -14.6 -3.00418 | opp_overlap 3596041 3596040, overlap 3596040 TAGTCAGTAAAGAAT CCGCCTTC TTA GAAGGCGG CTTTGATTTGCCCCT TERM 4504 3596067 - 3596085 + T 80 -8.8 -3.91084 | overlap 3596069 GAAGGCGGCTTTGAT TTGCCCCT GGA AGGGGCTA TTTCCTTACACCTAC TERM 4505 3596069 - 3596083 + T 89 -11.4 -3.54414 | overlap 3596067 AGGCGGCTTTGATTT GCCCCT GGA AGGGGC TATTTCCTTACACCT Shewmr4_3010 3596534 - 3596097 - | transposase IS200-family protein TERM 4506 3596642 - 3596618 - R 78 -9.9 -3.42056 | opp_overlap 3596621, overlap 3596621 AGCCTTAAGGGACAA TCACCACCGCC AAA GGCGGTGGTTT TGGGATGACAATAAA TERM 4507 3596639 - 3596621 - R 100 -16 -2.86539 | opp_overlap 3596621, overlap 3596618 CTTAAGGGACAATCA CCACCGCC AAA GGCGGTGG TTTTGGGATGACAAT TERM 4508 3596621 - 3596639 + r 100 -16 -4.13945 | opp_overlap 3596618 3596621 CTTAAGGGACAATCA CCACCGCC AAA GGCGGTGG TTTTGGGATGACAAT TERM 4509 3596682 - 3596654 - R 100 -14.8 -3.40403 | opp_overlap 3596660, overlap 3596660 GTTTTGGGATGACAA TAAAAATGGGCG ATTAA CGCCCATTTTTA TTGCCGAAGGAAGGT TERM 4510 3596660 - 3596676 + r 100 -9.4 -5.06414 | opp_overlap 3596654 3596660 GGATGACAATAAAAA TGGGCG ATTAA CGCCCA TTTTTATTGCCGAAG TERM 4511 3596676 - 3596660 - R 100 -9.4 -5.22006 | opp_overlap 3596660, overlap 3596654 GGATGACAATAAAAA TGGGCG ATTAA CGCCCA TTTTTATTGCCGAAG cysM 3597605 - 3596727 - | cysteine synthase B TERM 4512 3598346 - 3598358 + G 73 -6.3 -4.58283 | opp_overlap 3598345 TAAAGATAATCAAGC CTCAT TAG ATGAG TTTTTGAAGAAGTTC TERM 4513 3598403 - 3598424 + G 74 -7.3 -4.16842 | gap 1, overlap 3598407 CGTATTTGATACGGG CGGCCGTGGT GCA ACCAC-GTCG TTTGTTGAACGTGGC TERM 4514 3598587 - 3598574 - g 70 -3.1 -4.85599 | CGTAGTTGAGAAAAA CGCTA AGCG TAACG GCACGCAAGAACTCG Shewmr4_3012 3597813 - 3598820 + | sulfate ABC transporter, periplasmic sulfate-binding protein TERM 4515 3598852 - 3598879 + F 81 -11.3 -2.88822 | opp_overlap 3598850 3598857, overlap 3598857 CTAAGTCATCAAATT CACAACCCGGG CAATGT CCCGGGTTTTG TGGTTATATCGCAGC TERM 4516 3598857 - 3598874 + F 100 -9.8 -4.60073 | opp_overlap 3598850 3598857, overlap 3598852 TCATCAAATTCACAA CCCGGG CAATGT CCCGGG TTTTGTGGTTATATC TERM 4517 3598874 - 3598857 - f 78 -9.8 -3.48807 | opp_overlap 3598857 3598852, overlap 3598850 TCATCAAATTCACAA CCCGGG CAATGT CCCGGG TTTTGTGGTTATATC Shewmr4_3013 3598993 - 3599838 + | sulfate ABC transporter, inner membrane subunit CysT TERM 4518 3600463 - 3600489 + G 82 -10.8 -3.84648 | opp_overlap 3600471 ATTTATGGGGTGATC CTCACCAACGCC AGA GCCGTAGGTGAG TTTGGTGCTGTTGCC Shewmr4_3014 3599848 - 3600717 + | sulfate ABC transporter, inner membrane subunit CysW TERM 4519 3601745 - 3601725 - g 70 -4.6 -4.63527 | opp_overlap 3601716 3601740 TTAGGACTGCAAAAA GGCAGTGT GGTCT ACGCCGCC CCAAGAACGGCTTAT Shewmr4_3015 3600714 - 3601844 + | sulfate ABC transporter, ATPase subunit TERM 4520 3601903 - 3601882 - T 100 -10.9 -5.60689 | opp_overlap 3601882 GCATATAACAAAAAA GCGCTGACA GTCT TATCAGCGC TTTTTTATTCACTCT TERM 4521 3601882 - 3601903 + T 100 -8.7 -5.49234 | opp_overlap 3601882 GCATATAACAAAAAA GCGCTGACA GTCT TATCAGCGC TTTTTTATTCACTCT Shewmr4_3016 3603113 - 3601968 - | secretion protein HlyD family protein TERM 4522 3602776 - 3602792 + g 73 -9.4 -3.78026 | overlap 3602774 3602778 GGCACTTCCTGCTCC GCCGCT AACAG AGCGGC TCTTTTGCGTTTAAC Shewmr4_3017 3603531 - 3603115 - | hypothetical protein TERM 4523 3603188 - 3603220 + g 71 -7 -4.12532 | opp_overlap 3603186, overlap 3603183 TGATGGTTTACAACC GCTGGAGCGGCT GTCGATTCG AGTCGCTCAAGC TTTGTCTGTAAGGCC TERM 4524 3603514 - 3603504 - G 100 -6.8 -5.49579 | TGACAAAAAATAAAA TGCC TAA GGCA AAATAGTCCAAAAAC TERM 4525 3604310 - 3604284 - R 71 -8.8 -3.322 | opp_overlap 3604284 ATCTTCAGATATTAA GGAAAGATCGTA TCT TCCAATCTTTCC TTCTCGTTTCGACCA Shewmr4_3018 3605021 - 3604539 - | hypothetical protein TERM 4526 3604862 - 3604848 - G 86 -5.6 -5.28176 | overlap 3604850 TTTATCCATAAAAAA TACCCG CAC CGGGAA TTGGGATGAAAAACT TERM 4527 3604860 - 3604850 - G 76 -8.2 -4.2748 | overlap 3604848 TATCCATAAAAAATA CCCG CAC CGGG AATTGGGATGAAAAA Shewmr4_3019 3606784 - 3605219 - | ATPase central domain-containing protein TERM 4528 3606923 - 3606912 - H 71 -2.2 -5.09762 | ATCCCAATATAAAAA GGTA CCCA CACC ATGATAGGAACTCCC TERM 4529 3607123 - 3607113 - g 76 -8.2 -4.18197 | opp_overlap 3607112 ATGCTCGATGCAAAA GCGC TTC GCGC CATTATCGAGCTAGA purT 3606924 - 3608099 + | phosphoribosylglycinamide formyltransferase 2 TERM 4530 3608173 - 3608142 - f 81 -10.9 -3.29263 | gap 1, opp_overlap 3608146 3608147, overlap 3608145 ACACCTTGGCGATAA TCACTGCGCCCAGC CTGTT GCTGGGCGC-GTTA TTAAGGCATCAAAGC TERM 4531 3608170 - 3608145 - f 89 -12.6 -2.82623 | gap 1, opp_overlap 3608146 3608147, overlap 3608142 CCTTGGCGATAATCA CTGCGCCCAGC CTGTT GCTGGGCGC-G TTATTAAGGCATCAA TERM 4532 3608146 - 3608170 + F 100 -15 -3.62597 | opp_overlap 3608145 3608142, overlap 3608147 CTTGGCGATAATCAC TGCGCCCAGC CTGTT GCTGGGCGCG TTATTAAGGCATCAA TERM 4533 3608147 - 3608169 + F 100 -16.3 -2.77344 | opp_overlap 3608145 3608142, overlap 3608146 TTGGCGATAATCACT GCGCCCAGC CTGTT GCTGGGCGC GTTATTAAGGCATCA Shewmr4_3021 3608324 - 3609832 + | hypothetical protein Shewmr4_3022 3609822 - 3612101 + | TPR repeat-containing protein TERM 4534 3612141 - 3612111 - f 100 -11.3 -4.58297 | CAGTAAAAACACAAA GCGCCTTTCTT ATATTCCCA AAGAAAGGCGC TAAAGCTAACTGCCT TERM 4535 3612643 - 3612673 + F 72 -9.9 -2.80821 | gap 1, opp_overlap 3612652, overlap 3612652 ATTTTAGTTAATAGG TTTGGAAA-ACGCG CATG CGCGTTTTTCCAGA TGGTGTATTTGGCAG TERM 4536 3612663 - 3612652 - f 73 -7.2 -4.09511 | opp_overlap 3612643 3612652 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG TERM 4537 3612652 - 3612663 + F 81 -7.2 -4.60487 | opp_overlap 3612652, overlap 3612643 AATAGGTTTGGAAAA CGCG CATG CGCG TTTTTCCAGATGGTG Shewmr4_3023 3613176 - 3613880 + | hypothetical protein Shewmr4_3024 3614330 - 3615343 + | transposase IS116/IS110/IS902 family protein TERM 4538 3615683 - 3615711 + T 100 -13.4 -3.52877 | opp_overlap 3615683 CATTGCACAAAAAAA TAGCGATAAACT TACTT AGTTTATCGCTA TTCTGATGTGTTGCT TERM 4539 3615711 - 3615683 - T 100 -13.4 -5.626 | opp_overlap 3615683 CATTGCACAAAAAAA TAGCGATAAACT TACTT AGTTTATCGCTA TTCTGATGTGTTGCT TERM 4540 3615781 - 3615801 + T 71 -9.7 -2.61467 | opp_overlap 3615774, overlap 3615780 CCACTATAGGCCGCA CCATTGCTG ATG CGGCGATGG ATTACTTAACGATTT Shewmr4_3025 3617959 - 3615803 - | dipeptidyl-peptidase 7 TERM 4541 3615973 - 3615983 + g 70 -8.2 -3.66178 | opp_overlap 3615972 3615967 3615964 GTAAACCCACTAATT CGGC GCG GCCG TTTAGGGTTGGAGAA TERM 4542 3616976 - 3616964 - G 76 -7.7 -4.37886 | GGATTTGCCATAAAA CTCGA TCA TCGAG GTGAAGTTTTTAGCG TERM 4543 3617486 - 3617503 + g 86 -5.5 -5.2204 | overlap 3617487 GCCTTCATCCTTTTC ACACTCG GCAA CGAGTGC TTTTTCTTGGTTCTC TERM 4544 3617487 - 3617502 + g 73 -9 -3.71597 | overlap 3617486 CCTTCATCCTTTTCA CACTCG GCAA CGAGTG CTTTTTCTTGGTTCT TERM 4545 3617665 - 3617675 + g 86 -6.8 -4.9792 | TAGCTAAAAAACCGT CCTG CAG CAGG TTTTTCTCTGCAGTC TERM 4546 3618063 - 3618081 + r 82 -10.3 -3.64599 | opp_overlap 3618063 GCTAAAAAGCAAAAA GTCAGGC ACTGG GCCTGAC TTTAGCATATCGTAC TERM 4547 3618081 - 3618063 - R 100 -10.3 -5.18355 | opp_overlap 3618063 GCTAAAAAGCAAAAA GTCAGGC ACTGG GCCTGAC TTTAGCATATCGTAC TERM 4548 3618138 - 3618122 - R 78 -5.9 -4.90455 | opp_overlap 3618122 ACAGAGTTAGAAAAA TTCGCTT ACA AAGCAAA TACATTCATCATATT Shewmr4_3026 3619373 - 3618198 - | aromatic amino acid permease TERM 4549 3619845 - 3619805 - R 100 -12.8 -4.2558 | opp_overlap 3619812, overlap 3619808 3619812 GATCTGTTATCAAAA CAATAAACCCTGCAACAC TTGTG GCATTGCAGGGTTTATCA ATGAGTTTAGCGATT TERM 4550 3619842 - 3619808 - R 100 -14.5 -4.25256 | opp_overlap 3619812, overlap 3619805 3619812 CTGTTATCAAAACAA TAAACCCTGCAACAC TTGTG GCATTGCAGGGTTTA TCAATGAGTTTAGCG TERM 4551 3619812 - 3619838 + r 72 -7.2 -3.93984 | opp_overlap 3619808 3619805 3619812 TATCAAAACAATAAA CCCTGCAACACT TGT GGCATTGCAGGG TTTATCAATGAGTTT TERM 4552 3619838 - 3619812 - R 100 -10.9 -4.70107 | opp_overlap 3619812, overlap 3619808 3619805 TATCAAAACAATAAA CCCTGCAACAC TTGTG GCATTGCAGGG TTTATCAATGAGTTT Shewmr4_3027 3621406 - 3619931 - | N-acetylglucosamine-binding protein A TERM 4553 3621128 - 3621113 - G 73 -6 -4.47551 | ATCCAAGGGAGAAAA CGCTGC GTTG GCTGCG CTGGCAATTTTGCCG TERM 4554 3621703 - 3621692 - H 74 -4.4 -4.91987 | AATCTAACAACAAAA GACA GCGT TGTC AAAATTTAAGTTATT Shewmr4_3028 3621991 - 3622587 + | hypothetical protein TERM 4555 3622613 - 3622632 + T 100 -13.6 -5.27923 | opp_overlap 3622613 GAAGATAAACAAAAA GGCCAGTG ATAA CACTGGCC TTTTTTATGGGGTTA TERM 4556 3622632 - 3622613 - T 100 -13.6 -5.4659 | opp_overlap 3622613 GAAGATAAACAAAAA GGCCAGTG ATAA CACTGGCC TTTTTTATGGGGTTA Shewmr4_3029 3624118 - 3622658 - | catalase Shewmr4_3030 3624723 - 3624478 - | hypothetical protein Shewmr4_3031 3625214 - 3624777 - | hypothetical protein Shewmr4_3032 3625778 - 3625323 - | hypothetical protein TERM 4557 3625835 - 3625853 + r 95 -13.2 -3.15236 | opp_overlap 3625835 CAGTGCCATAAAAAA GGGATGGT AAA ACCATCCC TTAGCTCTGAGTTTA TERM 4558 3625853 - 3625835 - R 100 -13.2 -5.252 | opp_overlap 3625835 CAGTGCCATAAAAAA GGGATGGT AAA ACCATCCC TTAGCTCTGAGTTTA Shewmr4_3033 3628517 - 3625905 - | endonuclease/exonuclease/phosphatase TERM 4559 3628979 - 3628965 - R 75 -5.6 -4.74103 | GTCTCAATTTAAAAA CCCCGA CAT TTGGGG AGCTGGAGGCTGATG TERM 4560 3629094 - 3629074 - R 100 -12.6 -5.79526 | opp_overlap 3629074 ATACCGCAAAAAAAA TACCGCCC TAAGC GGGCGGTA TTCTATAAATGCAAT TERM 4561 3629074 - 3629094 + r 100 -12.6 -3.52102 | opp_overlap 3629074 ATACCGCAAAAAAAA TACCGCCC TAAGC GGGCGGTA TTCTATAAATGCAAT Shewmr4_3034 3629917 - 3629144 - | peptidylprolyl isomerase, FKBP-type TERM 4562 3629777 - 3629791 + g 71 -5.6 -4.58563 | ACGACCGATTGAAGC GCCAAC ACT GTAGGC TTCTTTTTGTGCTTC Shewmr4_3035 3630072 - 3631022 + | WD-40 repeat-containing protein Shewmr4_3036 3631032 - 3631244 + | SlyX family protein Shewmr4_3037 3631298 - 3631843 + | peptide deformylase Shewmr4_3038 3631840 - 3633240 + | TPR repeat-containing protein Shewmr4_3039 3633296 - 3633901 + | hypothetical protein TERM 4563 3633945 - 3633962 + F 100 -11.3 -6.17292 | opp_overlap 3633945 AAATACTCAAAAAAA GCCAGCA TTTT TGCTGGC TTTTTTTTTACATTT TERM 4564 3633962 - 3633945 - f 100 -11.3 -5.54264 | opp_overlap 3633945 AAATACTCAAAAAAA GCCAGCA TTTT TGCTGGC TTTTTTTTTACATTT Shewmr4_3040 3634143 - 3636776 + | aminopeptidase N TERM 4565 3636788 - 3636766 - T 86 -5.7 -5.3104 | gap 1 TGATCAAAAATAAAA TGACCC-ATT GATA AATCGGGTCA TCATCCACTAAAAAG TERM 4566 3636803 - 3636820 + T 100 -11.3 -5.68039 | opp_overlap 3636803 ATCATCCACTAAAAA GAGGCTC ATTC GAGCCTC TTTTTTTATGCCTTT TERM 4567 3636820 - 3636803 - T 100 -11.3 -4.75372 | opp_overlap 3636803 ATCATCCACTAAAAA GAGGCTC ATTC GAGCCTC TTTTTTTATGCCTTT Shewmr4_3041 3638390 - 3636834 - | EAL domain-containing protein TERM 4568 3637063 - 3637081 + g 74 -3.9 -4.98436 | opp_overlap 3637063 TCGGTACCTATAGTA TCGGTAA ACATC TTATCGA TTTTTATGCTGTTAA TERM 4569 3638763 - 3638714 - g 75 -8.8 -3.94184 | gap 1, opp_overlap 3638732, overlap 3638718 3638722 ATACTCAACATGAAA TTG-ATCAACTGGCGAATACCTT TGCCG AAGGTATTGGCCTGTGGATGCAA GATCGCAAAATGGCG TERM 4570 3639043 - 3639028 - g 80 -2.6 -5.44119 | gap 1, opp_overlap 3639042 GCCACCTTAAAAAAA CAAGTGG TGA CCA-TTG CCGAGCCCGTCATGG Shewmr4_3042 3638584 - 3640476 + | methyl-accepting chemotaxis sensory transducer TERM 4571 3640523 - 3640550 + T 100 -10 -4.82901 | opp_overlap 3640523 CCACGCTATAAAAAA TCCCCGATAA TCTGAGTC TTATCGGGGA TTTTTATAAACGGCC TERM 4572 3640550 - 3640523 - T 100 -10 -5.26316 | opp_overlap 3640523 CCACGCTATAAAAAA TCCCCGATAA TCTGAGTC TTATCGGGGA TTTTTATAAACGGCC Shewmr4_3043 3642021 - 3640579 - | diguanylate cyclase with PAS/PAC sensor TERM 4573 3642927 - 3642903 - g 88 -3.6 -5.55769 | gap 1, overlap 3642904 GCCCATAAGAAAAAA CCACAG-GTGC CCGT GCACGCTATAG CGACCGCCCATACGC TERM 4574 3642940 - 3642952 + G 70 -4.7 -4.71426 | TAGCGACCGCCCATA CGCCC GTG GTGCG TTTTATTGGTCAAAC Shewmr4_3044 3642300 - 3643253 + | hypothetical protein Shewmr4_3045 3644735 - 3643266 - | phosphate transporter TERM 4575 3644902 - 3644884 - R 100 -11.7 -4.74103 | opp_overlap 3644884 CCGCTAATGCAAAAA CGCCAGC ACAGG GCTGGCG TTTTAAGATTTAACA TERM 4576 3644884 - 3644902 + r 100 -11.7 -4.24002 | opp_overlap 3644884 CCGCTAATGCAAAAA CGCCAGC ACAGG GCTGGCG TTTTAAGATTTAACA mdoD 3646744 - 3644930 - | glucan biosynthesis protein D TERM 4577 3646270 - 3646282 + g 87 -4.7 -5.46657 | overlap 3646269 3646268 CCGAATCATCCTCAC GCCAC AGG GCGGC TTTTTTCTTGAAATG TERM 4578 3646838 - 3646820 - R 100 -14.6 -4.81734 | AAATAGTATTAAAAA GGGCTGCA AAA TGCAGCCC TTAGCAGTCATAAAA Shewmr4_3047 3648338 - 3646863 - | carbon starvation protein CstA Shewmr4_3048 3649042 - 3648566 - | GCN5-related N-acetyltransferase TERM 4579 3649139 - 3649108 - R 91 -6.6 -5.47218 | gap 1, overlap 3649109 CGTTAGCTAAAAAAA TGGGCGCATAACC AAGCAGA GGTTA-GCGCCCT AAGAGGCAAAACAAC TERM 4580 3649138 - 3649109 - R 84 -10.1 -3.87608 | gap 1, overlap 3649108 GTTAGCTAAAAAAAT GGGCGCATAACC AAGCAGA GGTTA-GCGCCC TAAGAGGCAAAACAA Shewmr4_3049 3649960 - 3649226 - | LrgB family protein Shewmr4_3050 3650394 - 3649960 - | LrgA family protein TERM 4581 3650817 - 3650833 + G 74 -4.3 -4.79223 | overlap 3650818 ACTCGGTCTTGCGCC ACTCGGC AGT GCTGAGA TTTTTGCTCCTATCA Shewmr4_3051 3650515 - 3651405 + | LysR family transcriptional regulator Shewmr4_3052 3652234 - 3651410 - | hypothetical protein Shewmr4_3053 3652609 - 3653343 + | extracellular solute-binding protein Shewmr4_3054 3653349 - 3654029 + | polar amino acid ABC transporter, inner membrane subunit Shewmr4_3055 3654022 - 3654747 + | ABC transporter related TERM 4582 3654784 - 3654811 + T 100 -10.6 -4.88918 | AAGCTTAATCTTCCA CGCCCATTGTTA GTGT TAACTGTGGGCG TTTTATTTACCCTAC Shewmr4_3056 3655261 - 3654857 - | glutathione-dependent formaldehyde-activating, GFA Shewmr4_3057 3655910 - 3655419 - | hypothetical protein Shewmr4_3058 3656107 - 3657048 + | nucleotide-binding protein TERM 4583 3657338 - 3657383 + T 70 -7.6 -3.70444 | opp_overlap 3657338 3657339, overlap 3657336 3657333 3657339 AAGCGACTTAAAAAA GCCTTGTGACCATTTGAGCT CTTTCA AACCCAAAGGGTCACAAGGA TATTGTTTATTAACT TERM 4584 3657383 - 3657338 - T 100 -12.7 -5.10497 | opp_overlap 3657338 3657336 3657333 3657339, overlap 3657339 AAGCGACTTAAAAAA GCCTTGTGACCATTTGAGCTC TTTC AAACCCAAAGGGTCACAAGGA TATTGTTTATTAACT TERM 4585 3657339 - 3657382 + T 77 -11.1 -2.81182 | opp_overlap 3657338 3657339, overlap 3657338 3657336 3657333 AGCGACTTAAAAAAG CCTTGTGACCATTTGAGCT CTTTCA AACCCAAAGGGTCACAAGG ATATTGTTTATTAAC TERM 4586 3657382 - 3657339 - T 100 -16.2 -3.65214 | opp_overlap 3657339 3657338 3657336 3657333, overlap 3657338 AGCGACTTAAAAAAG CCTTGTGACCATTTGAGCTC TTTC AAACCCAAAGGGTCACAAGG ATATTGTTTATTAAC Shewmr4_3059 3657854 - 3657393 - | hypothetical protein TERM 4587 3657816 - 3657765 - G 73 -8.9 -3.75863 | gap 2, opp_overlap 3657767, overlap 3657755 3657784 AAAAGGGTTAGCAAA CTGACCGTCGTAGGAGCAAGCCCAA CTTA TTGGGCTTGCGC-TA-AACGAACAG ACTGCTGTCAAAAAA Shewmr4_3060 3659818 - 3657863 - | beta-lactamase domain-containing protein Shewmr4_3061 3660213 - 3660866 + | dihydropteridine reductase TERM 4588 3660921 - 3660882 - f 71 -9.5 -3.00946 | opp_overlap 3660887, overlap 3660887 TCTGCCCATAAATTA TAAAAGCCCTTGTTTTA CTTAGT TAAAGCAAGGGCTTTTT ATTGCCTTATTCAAT TERM 4589 3660916 - 3660887 - f 100 -9.4 -4.64846 | opp_overlap 3660887, overlap 3660882 CCATAAATTATAAAA GCCCTTGTTTTA CTTAGT TAAAGCAAGGGC TTTTTATTGCCTTAT TERM 4590 3660887 - 3660916 + F 100 -11.6 -5.14645 | opp_overlap 3660887 3660882 CCATAAATTATAAAA GCCCTTGTTTTA CTTAGT TAAAGCAAGGGC TTTTTATTGCCTTAT Shewmr4_3062 3661169 - 3661813 + | heat shock protein DnaJ domain-containing protein Shewmr4_3063 3662080 - 3662832 + | DSBA oxidoreductase TERM 4591 3662884 - 3662855 - T 100 -15.3 -3.10715 | opp_overlap 3662855 3662862, overlap 3662862 TTGACGAGCAGCCAA TAAAAAACCAGCA GAGA TGCTGGTTTTTTA TTATGTGTTGATTAC TERM 4592 3662855 - 3662884 + T 100 -15.3 -3.72909 | opp_overlap 3662855 3662862, overlap 3662862 TTGACGAGCAGCCAA TAAAAAACCAGCA GAGA TGCTGGTTTTTTA TTATGTGTTGATTAC TERM 4593 3662877 - 3662862 - T 100 -9 -5.4833 | opp_overlap 3662855 3662862, overlap 3662855 GCAGCCAATAAAAAA CCAGCA GAGA TGCTGG TTTTTTATTATGTGT TERM 4594 3662862 - 3662877 + T 100 -9 -5.62045 | opp_overlap 3662862 3662855, overlap 3662855 GCAGCCAATAAAAAA CCAGCA GAGA TGCTGG TTTTTTATTATGTGT Shewmr4_3064 3663918 - 3662911 - | putative lipoprotein Shewmr4_3065 3664713 - 3664186 - | hypothetical protein TERM 4595 3664263 - 3664246 - G 72 -4.1 -4.81083 | overlap 3664255 GTGAACCACTAAAAA GCCAATA AATG CATCGGC GCAAATTTGATGGTA Shewmr4_3066 3665277 - 3664756 - | protoporphyrinogen oxidase TERM 4596 3665054 - 3665032 - G 73 -3.3 -5.04597 | opp_overlap 3665040, overlap 3665033 ACTCACAGAGAAAAA CCCGCTCAC CTTTT GCGAGAGGA TCTTTTGATGCTTTT TERM 4597 3665505 - 3665523 + H 73 -8.2 -3.65902 | opp_overlap 3665507 TACGATATTGCATAC TAGGTGAT TTA GTCACCTA TTTACATGAAATAGA TERM 4598 3665897 - 3665911 + G 76 -2.8 -5.13344 | overlap 3665890 AAATCCCCGGCTTCT TGGC CTTTACC GCCA TTTTTGTGTTGCTGT TERM 4599 3666361 - 3666379 + G 76 -4.5 -4.98436 | CTGTTAACCTTCTTC TCTGGCG CCCGT CGGCAGA TTTTTATGGTATTCG Shewmr4_3067 3665722 - 3666927 + | major facilitator transporter TERM 4600 3666920 - 3666910 - f 71 -3.2 -5.01546 | AAATCCATAGAAAAA CCGA GTC TCGA CAGTTAAAAAGTGCC Shewmr4_3068 3667067 - 3667906 + | hypothetical protein Shewmr4_3069 3668545 - 3667928 - | adenylylsulfate kinase TERM 4601 3668584 - 3668560 - R 78 -9.4 -3.58329 | overlap 3668552 3668561 TAAACACTCCTCAAA CCTTAGGTTG AGTAA CAACCTAAGA TAAAAAAATCATTAA TERM 4602 3668583 - 3668561 - R 77 -10.7 -2.74515 | overlap 3668552 3668560 AAACACTCCTCAAAC CTTAGGTTG AGTAA CAACCTAAG ATAAAAAAATCATTA Shewmr4_3070 3670320 - 3668596 - | TrkA domain-containing protein TERM 4603 3668762 - 3668747 - G 70 -3.2 -4.87803 | overlap 3668748 TAGGGCGAAATAAAA CTGGCG CTGG CACCAA ACACCACGGCCATGA TERM 4604 3669826 - 3669841 + g 84 -10.4 -4.07568 | CTCAAAGAATCCCAG CGCTGG CAAG CCAGCG TTTTCGACAAACGAG cysN 3671766 - 3670324 - | sulfate adenylyltransferase subunit 1 Shewmr4_3072 3672805 - 3671897 - | sulfate adenylyltransferase subunit 2 Shewmr4_3073 3673717 - 3672887 - | uroporphyrinogen-III C-methyltransferase TERM 4605 3673433 - 3673443 + g 71 -6.8 -4.13014 | opp_overlap 3673416 3673415 ATCGCCGCCCTTGAG GCGT ACC ACGC TTTTACGGGTATAGG TERM 4606 3674039 - 3674021 - H 71 -3.1 -5.00895 | gap 1, opp_overlap 3674021, overlap 3674022 3674023 TTTAGCACATAAAAA TGGGCGCA AGCT CGCG-CCA GTTGCGTCACTCTCT Shewmr4_3074 3674147 - 3675031 + | phospholipase A(1) TERM 4607 3675269 - 3675290 + G 100 -15.9 -4.75308 | GAGCGTGATCATTTG CGCGAGCCT CATC AGGCTCGCG TTTTTCGCTATTCCT Shewmr4_3075 3675219 - 3676766 + | hypothetical protein TERM 4608 3676801 - 3676763 - T 77 -10.5 -3.18274 | opp_overlap 3676774, overlap 3676774 GTTAGCCCAAGCCAA TTAACAAAAAAGCCAGC AATAA GCTGGCTTTTCGATTAA TGCACGATTGGCATA TERM 4609 3676790 - 3676774 - T 100 -9.4 -5.5604 | opp_overlap 3676774, overlap 3676763 CCAATTAACAAAAAA GCCAGC AATAA GCTGGC TTTTCGATTAATGCA TERM 4610 3676774 - 3676790 + T 88 -9.4 -4.30014 | opp_overlap 3676774 3676763 CCAATTAACAAAAAA GCCAGC AATAA GCTGGC TTTTCGATTAATGCA Shewmr4_3076 3678557 - 3676821 - | hypothetical protein TERM 4611 3678624 - 3678595 - R 100 -10.1 -4.94992 | opp_overlap 3678598 3678616, overlap 3678598 TCAAAGTGACAAAAA TAATACCGAAAGC ACTC GCCTTCGGTATTT AAATACTGATCTGTT TERM 4612 3678621 - 3678598 - R 100 -11.8 -4.55383 | opp_overlap 3678598 3678616, overlap 3678595 AAGTGACAAAAATAA TACCGAAAGC ACTC GCCTTCGGTA TTTAAATACTGATCT TERM 4613 3678598 - 3678621 + r 78 -9.6 -3.6959 | opp_overlap 3678595 3678598, overlap 3678616 AAGTGACAAAAATAA TACCGAAAGC ACTC GCCTTCGGTA TTTAAATACTGATCT Shewmr4_3077 3679708 - 3678923 - | monofunctional biosynthetic peptidoglycan transglycosylase TERM 4614 3680338 - 3680359 + r 91 -10.2 -4.21811 | opp_overlap 3680338 GCGTAAAATAAAAAA TGCCACAG GGGATA CTGTGGCA TTTATCTATTAAATC TERM 4615 3680359 - 3680338 - R 100 -10.2 -5.79595 | opp_overlap 3680338 GCGTAAAATAAAAAA TGCCACAG GGGATA CTGTGGCA TTTATCTATTAAATC Shewmr4_3078 3681182 - 3680385 - | phosphoadenosine phosphosulfate reductase Shewmr4_3079 3682872 - 3681175 - | sulfite reductase subunit beta TERM 4616 3682902 - 3682923 + r 72 -9.5 -3.15257 | overlap 3682901 3682898 3682896 AAAATTCGTTCGGCG GCAGTATCT CCGT GGATACTGC TCTCTATCTTTGGGA Shewmr4_3080 3684761 - 3682947 - | sulfite reductase (NADPH) alpha subunit TERM 4617 3686214 - 3686204 - g 91 -6.8 -5.19879 | overlap 3686206 GTGTAAAGAGAAAAA TGGC GTC GCCA GCATCAACTTCGATG TERM 4618 3686420 - 3686438 + G 84 -11 -3.81022 | overlap 3686410 TTTTGCTGCGGTTGC CTCGGTTG CTC CAGCCGAG TTCTTATCCCACTTT pntA 3685179 - 3686705 + | NAD(P) transhydrogenase subunit alpha pntB 3686717 - 3688201 + | pyridine nucleotide transhydrogenase TERM 4619 3688223 - 3688252 + F 100 -13.7 -4.17023 | opp_overlap 3688225 3688229, overlap 3688225 3688229 AGTTTGCGTATTAAT CATAAAGGGAGCC ACTT GGCTCCCTTTATC TTTTCCCCTGCTTAG TERM 4620 3688225 - 3688250 + F 100 -16.3 -3.68036 | opp_overlap 3688225 3688229, overlap 3688223 3688229 TTTGCGTATTAATCA TAAAGGGAGCC ACTT GGCTCCCTTTA TCTTTTCCCCTGCTT TERM 4621 3688250 - 3688225 - f 100 -16.3 -2.77899 | opp_overlap 3688223 3688225 3688229, overlap 3688229 TTTGCGTATTAATCA TAAAGGGAGCC ACTT GGCTCCCTTTA TCTTTTCCCCTGCTT TERM 4622 3688246 - 3688229 - f 100 -12.7 -4.08144 | opp_overlap 3688225 3688223 3688229, overlap 3688225 CGTATTAATCATAAA GGGAGCC ACTT GGCTCCC TTTATCTTTTCCCCT TERM 4623 3688229 - 3688246 + F 100 -12.7 -4.45771 | opp_overlap 3688229 3688225, overlap 3688225 3688223 CGTATTAATCATAAA GGGAGCC ACTT GGCTCCC TTTATCTTTTCCCCT Shewmr4_3083 3688356 - 3688745 + | hypothetical protein TERM 4624 3688796 - 3688811 + T 100 -10.4 -4.33105 | opp_overlap 3688796 CATAGAAACGAAAAA GGAGCC TGAA GGCTCC TTTTGATAGTAATTC TERM 4625 3688811 - 3688796 - T 100 -10.4 -5.07011 | opp_overlap 3688796 CATAGAAACGAAAAA GGAGCC TGAA GGCTCC TTTTGATAGTAATTC Shewmr4_3084 3689313 - 3688834 - | TetR family transcriptional regulator Shewmr4_3085 3690294 - 3689467 - | hypothetical protein Shewmr4_3086 3691721 - 3690291 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase Shewmr4_3087 3691824 - 3692750 + | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase TERM 4626 3692793 - 3692822 + T 100 -12.3 -4.24602 | opp_overlap 3692798, overlap 3692798 TGCTTAAAAGCAAAT AAAAATGCCAAGC AATC GCTTGGCATTTTG TTATTTTAAATCTGT TERM 4627 3692798 - 3692817 + T 100 -12.2 -5.093 | opp_overlap 3692798, overlap 3692793 AAAAGCAAATAAAAA TGCCAAGC AATC GCTTGGCA TTTTGTTATTTTAAA TERM 4628 3692817 - 3692798 - T 100 -12.2 -5.43974 | opp_overlap 3692798 3692793 AAAAGCAAATAAAAA TGCCAAGC AATC GCTTGGCA TTTTGTTATTTTAAA Shewmr4_3088 3694641 - 3692917 - | potassium/proton antiporter TERM 4629 3693559 - 3693535 - G 80 -2.8 -5.36965 | TAACACCACAAAAAA CGCCAAGTTA AAGTA CAACTGAGCG CCCGGTAATCCCGCC TERM 4630 3694406 - 3694390 - G 70 -9.3 -3.60296 | CAGTGCCACCCTAAA GCTCGCG ACC CGCGTGC GCATACCGCCATCGA Shewmr4_3089 3695264 - 3697549 + | putative nitric oxide reductase (subunit B) transmembrane protein TERM 4631 3697568 - 3697604 + F 79 -3.1 -5.31456 | gap 2, opp_overlap 3697577, overlap 3697565 3697573 CAGCGATTAATCCGG TCTG-A-CCAAGGTGTC GTTTA GGCACCTTGGTTGCTGA TTTTTTATAGCTTGC TERM 4632 3697573 - 3697597 + F 91 -12.2 -3.45764 | opp_overlap 3697577, overlap 3697565 3697568 ATTAATCCGGTCTGA CCAAGGTGTC GTTTA GGCACCTTGG TTGCTGATTTTTTAT TERM 4633 3698927 - 3698894 - g 74 -7.4 -4.13014 | opp_overlap 3698895, overlap 3698895 GCGATATCGGCAAAA GCTGGGGATGAAGC AGCTTA ACTTCAGCCCCAGT AGCTTAATGTTGCTC TERM 4634 3698926 - 3698895 - g 71 -10.9 -3.07487 | opp_overlap 3698895, overlap 3698894 CGATATCGGCAAAAG CTGGGGATGAAGC AGCTTA ACTTCAGCCCCAG TAGCTTAATGTTGCT Shewmr4_3090 3697743 - 3699299 + | anaerobic nitric oxide reductase transcription regulator TERM 4635 3700354 - 3700341 - g 76 -3.1 -5.1675 | gap 1, overlap 3700342 3700343 GCAGTGATTAAAAAA CTGCTC GAT GAGC-G TACAGGCGTACCAAC Shewmr4_3091 3699471 - 3700385 + | ErfK/YbiS/YcfS/YnhG family protein TERM 4636 3700423 - 3700400 - T 78 -10.3 -3.27511 | overlap 3700398 ATAAGCGAATCAATA GAGTAGCGG GTGATG CCGCTACCC CCATAAAAATACCCG TERM 4637 3700427 - 3700456 + T 100 -14.5 -3.65351 | opp_overlap 3700433, overlap 3700433 ATGCCGCTACCCCCA TAAAAATACCCGC CTAG GCGGGTATTTTTG TTTCAATCGAAATAG TERM 4638 3700450 - 3700433 - T 100 -11.3 -4.84359 | opp_overlap 3700427 3700433 CTACCCCCATAAAAA TACCCGC CTAG GCGGGTA TTTTTGTTTCAATCG TERM 4639 3700433 - 3700450 + T 100 -11.3 -5.30616 | opp_overlap 3700433, overlap 3700427 CTACCCCCATAAAAA TACCCGC CTAG GCGGGTA TTTTTGTTTCAATCG Shewmr4_3092 3701310 - 3700483 - | hypothetical protein TERM 4640 3701381 - 3701367 - H 73 -3.6 -5.00884 | overlap 3701350 3701368 AGTTCTTTTAAAAAA CTGAAT GCT ATTCAA CTGATTTAGATGAAA TERM 4641 3702360 - 3702377 + G 74 -7 -4.42806 | CGACGCCGCCGCGAT TCGCCT GCTCGA AGGCGA TTTATTTCAAAATAC Shewmr4_3093 3701473 - 3702888 + | peptidase M16 domain-containing protein TERM 4642 3703715 - 3703697 - g 70 -10.2 -2.94825 | overlap 3703696 TGATCTCAAGCAAAG CCTCGCCC TGT GGCCGAGG GATACAAACTCAAGC TERM 4643 3704396 - 3704382 - g 78 -10 -3.9373 | overlap 3704376 GACTTAAAAGCGAAA CTGCCA GAA TGGCAG CTTGAAAGGGTCAAG Shewmr4_3094 3702885 - 3704420 + | peptidase M16 domain-containing protein Shewmr4_3095 3705135 - 3704455 - | response regulator receiver/unknown domain-containing protein Shewmr4_3096 3706748 - 3705135 - | signal transduction histidine kinase regulating citrate/malate metabolism Shewmr4_3097 3708284 - 3706764 - | hypothetical protein TERM 4644 3707507 - 3707497 - G 80 -3.2 -5.27477 | ACCCCAATCAAAAAA CCGA AAA TCGA CGAGCGACCAATCAC Shewmr4_3098 3708754 - 3708287 - | putative tricarboxylic transport membrane protein Shewmr4_3099 3709718 - 3708765 - | hypothetical protein Shewmr4_3100 3711011 - 3709731 - | phosphate-selective porin O and P TERM 4645 3710990 - 3710971 - G 83 -9.2 -4.42667 | GCAAAACCAGTAAAA GCCACAGC GGTT GCCGCGGC AAGTAAGGTCAATTT TERM 4646 3711033 - 3711057 + r 71 -8.5 -3.4247 | overlap 3711035 CTCCTGTATTGCAGT CTGCCATTCCC AGT GGGAATGCCTG TGTTATTAGAATTGT TERM 4647 3711035 - 3711055 + r 76 -9.7 -3.2756 | overlap 3711033 CCTGTATTGCAGTCT GCCATTCCC AGT GGGAATGCC TGTGTTATTAGAATT Shewmr4_3101 3712376 - 3711588 - | hypothetical protein Shewmr4_3102 3712605 - 3713807 + | AFG1 family ATPase Shewmr4_3103 3713857 - 3714294 + | MerR family transcriptional regulator Shewmr4_3104 3714532 - 3715467 + | NAD-dependent epimerase/dehydratase Shewmr4_3105 3716189 - 3715566 - | lysine exporter protein LysE/YggA Shewmr4_3106 3717242 - 3716265 - | LysR family transcriptional regulator TERM 4648 3717844 - 3717820 - g 74 -7.7 -4.19953 | overlap 3717822 3717834 TACTTAAGCTCAAAA CAGGCGGGGCA AGA TGCCGCGCCAA CGGCCCATAAATCCA TERM 4649 3717842 - 3717822 - g 85 -12.5 -3.69618 | overlap 3717820 3717834 CTTAAGCTCAAAACA GGCGGGGCA AGA TGCCGCGCC AACGGCCCATAAATC Shewmr4_3107 3717379 - 3718338 + | hypothetical protein TERM 4650 3718356 - 3718373 + T 100 -11.3 -4.87318 | opp_overlap 3718356 TTCGCCCATAAAAAA GGGAGAC GACA GTCTCCC TTTTTAGCTTTTCAA TERM 4651 3718373 - 3718356 - T 100 -11.3 -5.24129 | opp_overlap 3718356 TTCGCCCATAAAAAA GGGAGAC GACA GTCTCCC TTTTTAGCTTTTCAA Shewmr4_3108 3719391 - 3718420 - | diguanylate cyclase with GAF sensor TERM 4652 3718819 - 3718795 - G 86 -6.5 -5.0538 | overlap 3718797 GTCGAGGTCAAAAAA CACTAACGC CGCTTTT GCGTTAGTA CGTCGACAACTGGCA TERM 4653 3718817 - 3718797 - G 71 -6.9 -4.15748 | overlap 3718795 CGAGGTCAAAAAACA CTAACGC CGCTTTT GCGTTAG TACGTCGACAACTGG Shewmr4_3109 3722315 - 3719451 - | (glutamate--ammonia-ligase) adenylyltransferase TERM 4654 3722394 - 3722414 + H 73 -8.3 -3.6682 | ATCAGGTTTGATGCC TTTGCCATG CAT CAAGGCAAA TTTCCCTCCATGGCA TERM 4655 3723345 - 3723323 - g 80 -3.4 -5.23316 | GAGCAGACCAAAAAA CGTTTCGATT CTC AAGGGAAACG CTTCGACAGCCCCTA Shewmr4_3110 3722567 - 3723544 + | hypothetical protein Shewmr4_3111 3723560 - 3724459 + | hypothetical protein TERM 4656 3724556 - 3724578 + G 78 -13.4 -2.62983 | ACTATTGGGCATTAT GGCCGTACTC GCT GGGTGCGGCC TGATCTACGAATACC TERM 4657 3725185 - 3725197 + G 71 -5.5 -4.46212 | opp_overlap 3725173 AAAGGGCAAAATTAT TGCTC GCA GGGCA TTTTGTGGTCACGGG TERM 4658 3726003 - 3725991 - g 71 -7.7 -4.11394 | overlap 3725993 3725994 ACCCTATCGGGAAAA GATGC CCA GCATC GCCTAGGCGAGCTGA Shewmr4_3112 3724464 - 3726197 + | spermidine synthase Shewmr4_3113 3726276 - 3726689 + | hypothetical protein TERM 4659 3727004 - 3726988 - g 70 -2.2 -5.01732 | AAGTGGCTGAAAAAA TTGCAC AATTG GAGCAA GAGCTGGCAGAGCAG Shewmr4_3114 3726702 - 3727391 + | phage shock protein A, PspA TERM 4660 3727449 - 3727409 - f 70 -9.2 -2.85996 | opp_overlap 3727409, overlap 3727408 CATGATTGACCAAAC GCCGAGCACCAAT-GGGA CCATCAC CCCCTATTG-TGCTCGGC TTTTTTGTTTTAGGT TERM 4661 3727409 - 3727449 + F 100 -9.9 -5.80951 | gap 1, opp_overlap 3727409 3727408 CATGATTGACCAAAC GCCGAGCACCAATGGG ACCATCACCC CCTATT-GTGCTCGGC TTTTTTGTTTTAGGT TERM 4662 3727751 - 3727763 + G 82 -7.7 -4.74706 | GCTAAAAGGTCATGG TAGCG AGA CGCTA TTTTTGAGTATTGAA Shewmr4_3115 3727539 - 3728192 + | hypothetical protein TERM 4663 3728207 - 3728229 + F 76 -10.7 -2.53213 | opp_overlap 3728207 3728211, overlap 3728211 AAGTTTGGCATATGA TAAAGTGCG CGATT CGCACTTTA TCGCTTAACCCATTA TERM 4664 3728229 - 3728207 - f 76 -10.7 -2.62515 | opp_overlap 3728207 3728211, overlap 3728211 AAGTTTGGCATATGA TAAAGTGCG CGATT CGCACTTTA TCGCTTAACCCATTA TERM 4665 3728211 - 3728225 + F 72 -7.1 -3.97368 | opp_overlap 3728211 3728207, overlap 3728207 TTGGCATATGATAAA GTGCG CGATT CGCAC TTTATCGCTTAACCC TERM 4666 3728225 - 3728211 - f 72 -7.1 -4.0162 | opp_overlap 3728207 3728211, overlap 3728207 TTGGCATATGATAAA GTGCG CGATT CGCAC TTTATCGCTTAACCC Shewmr4_3116 3728300 - 3728629 + | hypothetical protein TERM 4667 3728683 - 3728658 - f 70 -7.5 -3.794 | opp_overlap 3728658, overlap 3728653 GTTTAAGCCATTAAA TCGCCTGACAT ACCT AAGTCGGGCGA TTTATCACAAAGTTA TERM 4668 3728658 - 3728683 + F 84 -9.7 -3.86822 | opp_overlap 3728658 3728653 GTTTAAGCCATTAAA TCGCCTGACAT ACCT AAGTCGGGCGA TTTATCACAAAGTTA TERM 4669 3728966 - 3728987 + G 80 -2.9 -5.36441 | AACTTTTTCATTGGC CTGTTTCGC GCTC GCGATAAAG TTTTTTATCTGCGCC TERM 4670 3729162 - 3729179 + G 74 -7.7 -4.19506 | CTCTCGCCAGTTTAC TGGTCGC TATG GTGACCA TTTTAACCTTCGCCT Shewmr4_3117 3728765 - 3729589 + | Ion transport 2 domain-containing protein TERM 4671 3729612 - 3729583 - T 100 -10.1 -4.78752 | gap 1, opp_overlap 3729585, overlap 3729585 ACTAGAAGCGAAAAA TAGC-TAGGAAGGC ATG GCCTTCCTACGCTT TATGCAATGTGACTA TERM 4672 3729585 - 3729610 + T 100 -12.7 -3.91144 | gap 1, opp_overlap 3729583 3729585 TAGAAGCGAAAAATA GC-TAGGAAGGC ATG GCCTTCCTACGC TTTATGCAATGTGAC TERM 4673 3729610 - 3729585 - T 100 -12.7 -4.00465 | gap 1, opp_overlap 3729585, overlap 3729583 TAGAAGCGAAAAATA GC-TAGGAAGGC ATG GCCTTCCTACGC TTTATGCAATGTGAC Shewmr4_3118 3731139 - 3729628 - | adenylate cyclase TERM 4674 3731269 - 3731294 + H 70 -7.7 -3.64703 | opp_overlap 3731268 3731264 3731269 CCCGTTAGAATAAAG CTGTGATTTTT TCTC AAAAAACACAG TTTCAATACGCGGAC TERM 4675 3731304 - 3731331 + H 91 -8.4 -4.63527 | opp_overlap 3731303 ACACAGTTTCAATAC GCGGACGCAT AGGGTAAC ATGCGCCCGC TTTTTCCAATCATGG Shewmr4_3119 3731371 - 3732051 + | hypothetical protein Shewmr4_3120 3732077 - 3733366 + | phosphate transporter TERM 4676 3733445 - 3733467 + F 100 -16.4 -3.17194 | opp_overlap 3733443 3733442 GGATGCGGCAAAGTT GAGGGAAGTC TAT GACTTCCCTC TTGCATTGCAGGCCT Shewmr4_3121 3733559 - 3734107 + | SH3 domain-containing protein TERM 4677 3734169 - 3734138 - f 91 -13.2 -2.70298 | opp_overlap 3734143, overlap 3734143 GCCGCGAAGTATAAG TAAAAGCCAGTGTT TTCA AACACTGGCTTTTT TGTCAATTGAGCGTT TERM 4678 3734164 - 3734143 - f 100 -13.1 -4.52781 | opp_overlap 3734143, overlap 3734138 GAAGTATAAGTAAAA GCCAGTGTT TTCA AACACTGGC TTTTTTGTCAATTGA TERM 4679 3734143 - 3734164 + F 100 -13.1 -5.31456 | opp_overlap 3734143 3734138 GAAGTATAAGTAAAA GCCAGTGTT TTCA AACACTGGC TTTTTTGTCAATTGA Shewmr4_3122 3734367 - 3737561 + | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase TERM 4680 3737628 - 3737610 - f 100 -14.6 -3.33265 | opp_overlap 3737610, overlap 3737605 ATTCCATAAAGTTAA GGCCAGAC ATT GTCTGGCC TTTTTTACTTCATTA TERM 4681 3737610 - 3737628 + F 100 -14.6 -5.32565 | opp_overlap 3737605 3737610 ATTCCATAAAGTTAA GGCCAGAC ATT GTCTGGCC TTTTTTACTTCATTA TERM 4682 3737672 - 3737650 - f 74 -7.6 -3.95852 | ACTTCATTAATCAAA GTCGTGGGGC TTC ACCCCACACC CGACCAAGGAGGACT TERM 4683 3738111 - 3738137 + F 73 -8.7 -3.53091 | opp_overlap 3738108 3738107 3738109, overlap 3738115 GTTGAAGAAAATCGC GTGACGCAGAC AGGAC GTCTGCGTAGC TTTCGGGGGGAAGGT TERM 4684 3738115 - 3738133 + F 74 -10.3 -2.64155 | opp_overlap 3738108 3738107 3738109, overlap 3738111 AAGAAAATCGCGTGA CGCAGAC AGGAC GTCTGCG TAGCTTTCGGGGGGA TERM 4685 3738247 - 3738267 + F 72 -6.1 -4.27617 | opp_overlap 3738247 GGGGGATTTCCAAAA GGGGAACAG GCG TTTTTCCCC TTTTGGTCGGGTGTG TERM 4686 3738277 - 3738299 + F 74 -7.6 -3.91911 | TTCCCCTTTTGGTCG GGTGTGGGGT GAA GCCCCACGAC TTTGATTCACCTCGG Shewmr4_3123 3738569 - 3739303 + | hypothetical protein TERM 4687 3739316 - 3739345 + F 100 -12.3 -4.07466 | opp_overlap 3739303 3739300 3739319, overlap 3739319 TAGTCCCAGCCAACC TAAGACTGCGC CAGCCAAA GCGCAGTCTTA TTCTTGTTCTATACT TERM 4688 3739319 - 3739342 + F 85 -9.6 -4.14147 | opp_overlap 3739303 3739300 3739319, overlap 3739316 TCCCAGCCAACCTAA GACTGCGC CAGCCAAA GCGCAGTC TTATTCTTGTTCTAT TERM 4689 3739342 - 3739319 - f 77 -10.3 -3.19192 | opp_overlap 3739316 3739319, overlap 3739303 3739300 TCCCAGCCAACCTAA GACTGCGCC AGCCAA AGCGCAGTC TTATTCTTGTTCTAT Shewmr4_3124 3739398 - 3739577 + | DNA binding domain-containing protein Shewmr4_3125 3740243 - 3739629 - | putative adenylyl cyclase CyaB Shewmr4_3126 3742047 - 3740296 - | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 4690 3741666 - 3741679 + g 74 -9.5 -3.63627 | CGAGTGTATCTATAT CCGCC ACGA GGCGG TTTAGCATATCCGCA TERM 4691 3741856 - 3741842 - G 79 -5.6 -5.05113 | overlap 3741844 GCGATAGAAAGAAAA CGCACG CCA CCTGCG GGAGTAAAAAAGTTA Shewmr4_3127 3743999 - 3742044 - | cysteine/glutathione ABC transporter membrane/ATP-binding component TERM 4692 3743238 - 3743258 + g 70 -4.6 -4.67011 | opp_overlap 3743229 CACAGACATAGTACG GCTACGGA ACTCC TCCGAGGC TTTTTCAATCACCTT TERM 4693 3743936 - 3743946 + g 80 -2.4 -5.43866 | opp_overlap 3743934, overlap 3743934 AGAGCTTAACAAACC AGCC ACA GGCC TTTTTTTGCGACTTG Shewmr4_3128 3745293 - 3744247 - | hypothetical protein TERM 4694 3745385 - 3745373 - H 74 -7.7 -3.98484 | opp_overlap 3745372 AATTCAAGCTACAAA GGGAA AAT TTCCC AGTTATCTTTACTAA TERM 4695 3745862 - 3745843 - g 74 -4.9 -4.8048 | opp_overlap 3745843, overlap 3745845 CGGGGACAGGAAAAA CCGCAGG CTTTAC CCTGCCG TTGCTCGAATTACTC TERM 4696 3746977 - 3746962 - g 70 -10.4 -2.94938 | GTAAAACGCCAGACA GCAGCG ACGG CGCTGC GCAGCAAAAGAACTC Shewmr4_3129 3745689 - 3747338 + | DEAD/DEAH box helicase domain-containing protein TERM 4697 3747383 - 3747409 + T 100 -21 -4.47183 | opp_overlap 3747383 AAGATGCCAAAAAAA GATGCCCAGCAC TGA GTGCTGGGCATC TTTGTTTGAGTACTA TERM 4698 3747409 - 3747383 - T 100 -21 -5.46629 | opp_overlap 3747383 AAGATGCCAAAAAAA GATGCCCAGCAC TGA GTGCTGGGCATC TTTGTTTGAGTACTA Shewmr4_3130 3749148 - 3747448 - | methyl-accepting chemotaxis sensory transducer TERM 4699 3747895 - 3747910 + g 77 -10.4 -3.53811 | opp_overlap 3747907, overlap 3747905 ATCGCCCGCCCTAGC CGCCTC AATG GAGGCG TTTAACGCCAGTAAA TERM 4700 3749156 - 3749141 - G 73 -3.2 -5.03747 | AAATCTTTTAAAAAA CCAAGC ATAA GCTTTG AACTCCAACAACCAA TERM 4701 3749258 - 3749248 - H 70 -2.6 -5.04601 | CTTATAAACGAAAAA TAAA ACC TTTA GCATCCACAGTTCAC Shewmr4_3131 3749418 - 3750665 + | cysteine desulfurase Shewmr4_3132 3750733 - 3751176 + | Fe-S metabolism associated SufE TERM 4702 3751380 - 3751397 + G 74 -9.8 -3.60792 | TTCTCCAGCCTTGCA GCGCCG CGCTCT CGGCGC TTATATATAGATGGT TERM 4703 3751448 - 3751466 + G 79 -5.2 -5.02502 | overlap 3751449 CTTAGCCGATGTTCC CGCATCGG GGC TCGATGCC TTTTTATGTGATATC TERM 4704 3751449 - 3751465 + G 70 -8.7 -3.60416 | overlap 3751448 TTAGCCGATGTTCCC GCATCGG GGC TCGATGC CTTTTTATGTGATAT TERM 4705 3751649 - 3751659 + G 70 -4.6 -4.64676 | opp_overlap 3751649 3751645 GGCAAGAGAGAGCAA TCGC ACC GCGG TTTTCTTCCAGATCC Shewmr4_3133 3751287 - 3752450 + | twin-arginine translocation pathway signal Shewmr4_3134 3752510 - 3753682 + | hypothetical protein Shewmr4_3135 3754036 - 3753707 - | cupin 2 domain-containing protein Shewmr4_3136 3754183 - 3756450 + | hypothetical protein TERM 4706 3756490 - 3756456 - T 72 -9.5 -3.09933 | overlap 3756458 CTTGAATTGATTGAA TATCAGCAAGTCA ATTAGGCGA TGACCTGCTGATA ACTCGATCGCAAAAG Shewmr4_3137 3756887 - 3756513 - | hypothetical protein TERM 4707 3756982 - 3757007 + r 100 -16.3 -3.16742 | opp_overlap 3756982 CCCTAAAAACAAAAA GGGAGCATTGA ATAC TCAATGCTCCC TTGATAACCATTCAA TERM 4708 3757007 - 3756982 - R 100 -16.3 -5.61881 | opp_overlap 3756982 CCCTAAAAACAAAAA GGGAGCATTGA ATAC TCAATGCTCCC TTGATAACCATTCAA Shewmr4_3138 3758945 - 3757029 - | peptidase U32 TERM 4709 3757562 - 3757576 + g 73 -3.4 -5.0538 | GCAAGGTTTTTTCAG CGTCGG TGG CGGGCG TTTTTTCGACTGCAA TERM 4710 3758852 - 3758865 + g 74 -3.8 -5.00616 | GGCGAATGGCTTCAA TGCC ATAATC GGCA TTTTTTGCAGGCGCC TERM 4711 3759754 - 3759739 - g 73 -6.1 -4.48741 | GAACTGACCATAAAA CACCC TTATAC GGGTG AGAGCATGACGTTCA Shewmr4_3139 3759133 - 3759810 + | ribosomal large subunit pseudouridine synthase A Shewmr4_3140 3759873 - 3760367 + | DNA-binding transcriptional regulator AsnC TERM 4712 3762426 - 3762411 - g 74 -2.5 -5.07486 | CATGTTCAACAAAAA GCCGT TTAAAG ACAGC TCTTGGGATAATGCT TERM 4713 3762909 - 3762893 - g 71 -5.8 -4.36914 | TTGCTGCCTATAAAA TGACGC CTATT GCGCCA ACTTATACAGAAGCC TERM 4714 3763765 - 3763746 - g 72 -3.5 -4.75309 | opp_overlap 3763746, overlap 3763747 3763749 TGAAATTGAAGAAAA CTACGAC GGTGGT GTCGTCG AAATTAGCGTCAACG Shewmr4_3141 3760573 - 3764754 + | protease domain-containing protein TERM 4715 3764802 - 3764788 - T 100 -8.5 -4.90455 | opp_overlap 3764788 ATATACTGATAAAAA GCCGC GATTT GCGGC TTTTTTATTTCAAAA TERM 4716 3764788 - 3764802 + T 100 -9.2 -5.63517 | opp_overlap 3764788 ATATACTGATAAAAA GCCGCG ATT TGCGGC TTTTTTATTTCAAAA Shewmr4_3142 3765333 - 3764830 - | hypothetical protein TERM 4717 3765450 - 3765433 - R 84 -6.3 -4.96848 | GCCTGCACATAAAAA GGCATAA AAAT TTACGCC TTCCAAAGTCACAAC Shewmr4_3143 3766248 - 3765478 - | ABC-2 type transporter Shewmr4_3144 3767183 - 3766245 - | ABC transporter related TERM 4718 3767369 - 3767386 + r 100 -12.7 -3.68351 | opp_overlap 3767369 CAGCACAAAACAAAA CTCCCGC CTTA GCGGGAG TTTGAATCGTCGAGC TERM 4719 3767386 - 3767369 - R 100 -12.7 -5.20781 | opp_overlap 3767369 CAGCACAAAACAAAA CTCCCGC CTTA GCGGGAG TTTGAATCGTCGAGC Shewmr4_3145 3767941 - 3767411 - | hypoxanthine phosphoribosyltransferase Shewmr4_3146 3768608 - 3767949 - | aromatic acid decarboxylase TERM 4720 3768102 - 3768087 - G 74 -6.8 -4.38712 | gap 1, overlap 3768088 3768089 GGGATTGTGATAAAA GCCCGGC GCC GCCGG-C ATAATAGTAACGCCT Shewmr4_3147 3770007 - 3768610 - | UDP-N-acetylmuramate TERM 4721 3769302 - 3769313 + g 70 -4.4 -4.65263 | GCTCGCTCCAGCAGC CCAT CTCA ATGG TTTGTTTTACCGCGT Shewmr4_3148 3770811 - 3770179 - | hypothetical protein Shewmr4_3149 3771872 - 3771009 - | sterol desaturase family protein Shewmr4_3150 3772948 - 3771917 - | hypothetical protein TERM 4722 3773130 - 3773117 - R 86 -5.9 -5.31275 | opp_overlap 3773117 GCGGATCATAAAAAA GCACC CGAA GGCGC TTAATCGACACAAAC Shewmr4_3151 3773706 - 3773203 - | OmpA domain-containing protein Shewmr4_3152 3773891 - 3774469 + | hypothetical protein Shewmr4_3153 3774503 - 3775090 + | peptidyl-prolyl cis-trans isomerase, cyclophilin type TERM 4723 3775232 - 3775258 + G 73 -10.2 -3.24232 | overlap 3775229 GCATTTTTGAGTGAC GAGCTCGATTTC CAT GAAGTCCAGCTC TATCTTTGGGACACA Shewmr4_3154 3775160 - 3775480 + | hypothetical protein TERM 4724 3775498 - 3775515 + F 100 -7.7 -5.45802 | opp_overlap 3775498 AATACACTCTCTAAA GACTCAG CTTG CTGGGTC TTTTTATTTTCCCCC TERM 4725 3776106 - 3776090 - g 70 -2.1 -5.00616 | overlap 3776091 3776094 CTGCCCCCGAAAAAA TGCAGGC CGC GCTTGCT GCCGCCTATCAGGTG Shewmr4_3155 3775630 - 3777027 + | major facilitator transporter TERM 4726 3777057 - 3777032 - T 100 -14 -5.5604 | opp_overlap 3777032 CTAAGCAATAAAAAA GCCCCTCGCC TTTAAT AGCGAGGGGC TTTTGAATCTCTATC TERM 4727 3777032 - 3777057 + T 100 -13.3 -4.27259 | opp_overlap 3777032 CTAAGCAATAAAAAA GCCCCTCGC CTTTAATA GCGAGGGGC TTTTGAATCTCTATC Shewmr4_3156 3777603 - 3777118 - | nucleotide-binding protein Shewmr4_3157 3777766 - 3778128 + | VanZ family protein TERM 4728 3778635 - 3778608 - g 70 -8.6 -3.75153 | gap 1, opp_overlap 3778620, overlap 3778612 CGCTGGCAAGTCAAA CAAACC-GGTCAA GGC TTGACCCAGTTTG GCCATTTTACCGGAC Shewmr4_3158 3778128 - 3779108 + | 2-dehydropantoate 2-reductase Shewmr4_3159 3779404 - 3779742 + | nitrogen regulatory protein P-II Shewmr4_3160 3779739 - 3781139 + | ammonium transporter TERM 4729 3781136 - 3781123 - T 79 -8.1 -4.33153 | opp_overlap 3781123 3781126 CCGAACATGAAGAAA CAGGC TATA GCCTG TAGCTTGATGACTAC TERM 4730 3781184 - 3781153 - T 100 -21.8 -2.82635 | opp_overlap 3781153 3781181 AGCTTGATGACTACA CTTGCCATCAGGAC TCAC GTCCTGATGGCAAG TTTACTGATACAACT TERM 4731 3781153 - 3781184 + T 100 -21.8 -3.78953 | opp_overlap 3781153, overlap 3781181 AGCTTGATGACTACA CTTGCCATCAGGAC TCAC GTCCTGATGGCAAG TTTACTGATACAACT Shewmr4_3162 3782311 - 3781439 - | hypothetical protein TERM 4732 3782430 - 3782448 + r 100 -8.8 -4.8622 | opp_overlap 3782431, overlap 3782431 TTCACCCAATAAAAA ACCCCGAA CGA TTCGGGGC TTTTTAGTTAAGAGG TERM 4733 3782431 - 3782447 + r 100 -12.3 -3.5125 | opp_overlap 3782431, overlap 3782430 TCACCCAATAAAAAA CCCCGAA CGA TTCGGGG CTTTTTAGTTAAGAG TERM 4734 3782447 - 3782431 - R 100 -12.3 -5.4833 | opp_overlap 3782430 3782431 TCACCCAATAAAAAA CCCCGAA CGA TTCGGGG CTTTTTAGTTAAGAG Shewmr4_3163 3783324 - 3782476 - | 2-dehydro-3-deoxyphosphooctonate aldolase Shewmr4_3164 3784629 - 3783382 - | hypothetical protein TERM 4735 3784303 - 3784269 - G 71 -11.5 -2.74598 | gap 1, overlap 3784266 3784261 CGATAAAGGACACTA CGAGCAGTGCGATCGG TCCG CCGATCACAATGC-CG ACAGTCCCAGTTAAA TERM 4736 3784690 - 3784678 - R 71 -4.8 -4.62783 | opp_overlap 3784678 TATTTATGCTAAAAA CTGC CGTTT GCAG TTAGTGGGCAAACTT TERM 4737 3784768 - 3784742 - R 100 -13.8 -4.82901 | opp_overlap 3784745, overlap 3784745 TGTTTTTTAGAAAAA CAAGGAGAGCCT ACT AGGCTCTCCTTT AAGATTTAGTGATAG TERM 4738 3784745 - 3784765 + r 100 -15.5 -3.73107 | opp_overlap 3784742 3784745 TTTTTAGAAAAACAA GGAGAGCCT ACT AGGCTCTCC TTTAAGATTTAGTGA TERM 4739 3784765 - 3784745 - R 100 -15.5 -4.52873 | opp_overlap 3784745, overlap 3784742 TTTTTAGAAAAACAA GGAGAGCCT ACT AGGCTCTCC TTTAAGATTTAGTGA Shewmr4_3165 3785562 - 3784774 - | hypothetical protein TERM 4740 3785389 - 3785412 + g 79 -12.5 -3.14344 | opp_overlap 3785388 3785387 3785383 3785391 CTGATAAAACCAATG CAGCAACGC ATTTAA GCGTTGCTG TTGATCCACCAGGTA Shewmr4_3166 3785957 - 3785562 - | invasion gene expression up-regulator, SirB Shewmr4_3167 3786076 - 3786489 + | GCN5-related N-acetyltransferase TERM 4741 3786602 - 3786578 - T 100 -10.8 -5.4433 | opp_overlap 3786578 ATACACAAATAAAAA CGCCATTGAT AAATA ACCAATGGCG TTGTTTAGTGTTTGG TERM 4742 3786578 - 3786602 + T 79 -8.6 -4.12133 | opp_overlap 3786578 ATACACAAATAAAAA CGCCATTGAT AAATA ACCAATGGCG TTGTTTAGTGTTTGG Shewmr4_3168 3787495 - 3786635 - | HemK family modification methylase TERM 4743 3787434 - 3787405 - G 79 -8.6 -4.34947 | overlap 3787394 AATACAGCAGGAAAA CCTCTGCATCCA AATGGG CGGATTCAGAGG TAGGCGCTAGCTGGA prfA 3788589 - 3787498 - | peptide chain release factor 1 TERM 4744 3787718 - 3787729 + g 76 -7.2 -4.4261 | overlap 3787716 CGAGTCGACTCTTCG GCGC TGCG GCGC TTTTCGTCTTCAACG TERM 4745 3787764 - 3787786 + g 73 -3.3 -4.95155 | opp_overlap 3787767, overlap 3787765 GGATACGCGCGGCTA ACACGCTCA TCGCT TGAGCGCGG TTTTTATGCTGTGAA hemA 3789854 - 3788604 - | glutamyl-tRNA reductase TERM 4746 3789757 - 3789772 + g 71 -6.2 -4.36914 | CGACTGGCCAGACTC TTCATG GCAT CATGAA TTTTGTCCGGAGAGA Shewmr4_3171 3790109 - 3790753 + | outer membrane lipoprotein LolB Shewmr4_3172 3790755 - 3791609 + | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase TERM 4747 3792451 - 3792436 - g 71 -6.8 -4.19577 | opp_overlap 3792434 3792436, overlap 3792448 GAAGCCTTAAAAGAA CACGGT GCAA ACCGCG TATTTGCTTACGCGA Shewmr4_3173 3791722 - 3792669 + | ribose-phosphate pyrophosphokinase TERM 4748 3792686 - 3792715 + T 100 -12.3 -4.04319 | opp_overlap 3792693, overlap 3792693 CTCGGCGCTTTGCAT AAAAAAACGCACC TTAG GGTGCGTTTTTTG TTTGTGGGTTTATCG TERM 4749 3792708 - 3792693 - T 100 -10.4 -5.60993 | opp_overlap 3792686 3792693 CTTTGCATAAAAAAA CGCACC TTAG GGTGCG TTTTTTGTTTGTGGG TERM 4750 3792693 - 3792708 + T 100 -10.4 -5.72622 | opp_overlap 3792693, overlap 3792686 CTTTGCATAAAAAAA CGCACC TTAG GGTGCG TTTTTTGTTTGTGGG TERM 4751 3792832 - 3792817 - T 100 -10.4 -5.24129 | opp_overlap 3792817 CTTCGCCATAAAAAA CGCACC CTAG GGTGCG TTTCTAACAGATAAA TERM 4752 3792817 - 3792832 + T 86 -10.4 -3.86897 | opp_overlap 3792817 CTTCGCCATAAAAAA CGCACC CTAG GGTGCG TTTCTAACAGATAAA Shewmr4_3174 3794717 - 3792855 - | methyl-accepting chemotaxis sensory transducer TERM 4753 3794790 - 3794806 + H 77 -3.7 -5.14682 | opp_overlap 3794783 CAGCAAAATATCCCT GATATAC AAA GTTTATC TTTTATTTATTGTGC TERM 4754 3794894 - 3794907 + H 70 -3.7 -4.74706 | TGCTTAACATAGCGA GCGAG CAAT CACGC TTTTTAGCTATTACG Shewmr4_3175 3795118 - 3795651 + | ECF subfamily RNA polymerase sigma-24 factor Shewmr4_3176 3795651 - 3796226 + | hypothetical protein Shewmr4_3177 3796223 - 3797179 + | hypothetical protein TERM 4755 3797224 - 3797244 + T 100 -12.6 -5.40072 | opp_overlap 3797224 AAATAGCAATAAAAA TGCCGCTC CATGA GAGCGGCA TTTTTTTAACCCAAA TERM 4756 3797244 - 3797224 - T 100 -13.3 -5.20606 | opp_overlap 3797224 AAATAGCAATAAAAA TGCCGCTCC ATG AGAGCGGCA TTTTTTTAACCCAAA Shewmr4_3178 3797972 - 3797265 - | ribosomal small subunit pseudouridine synthase A Shewmr4_3179 3798311 - 3800395 + | endothelin-converting protein 1 TERM 4757 3800466 - 3800424 - f 75 -8.6 -3.8448 | gap 1, opp_overlap 3800433, overlap 3800428 3800433 CAAGACAGTAGTAAA TAAACCCAATGGCGCCGCT CACAAT AGCGGCGCCATTTT-TTTA GGCACGAAAAATGTG TERM 4758 3800463 - 3800428 - f 78 -7.5 -4.52345 | opp_overlap 3800433, overlap 3800424 3800433 ACAGTAGTAAATAAA CCCAATGGCGCCGCT CACAAT AGCGGCGCCATTTTT TTAGGCACGAAAAAT TERM 4759 3800458 - 3800433 - f 100 -16.2 -3.4241 | opp_overlap 3800433, overlap 3800428 3800424 AGTAAATAAACCCAA TGGCGCCGCT CACAAT AGCGGCGCCA TTTTTTTAGGCACGA TERM 4760 3800433 - 3800458 + F 100 -16.2 -5.40072 | opp_overlap 3800433 3800428 3800424 AGTAAATAAACCCAA TGGCGCCGCT CACAAT AGCGGCGCCA TTTTTTTAGGCACGA Shewmr4_3180 3800593 - 3801378 + | hypothetical protein TERM 4761 3801432 - 3801464 + F 100 -13.6 -5.40072 | gap 1 ACCACTTCCACTGTT GCGCTGGCTATTTGT GAAA ACAGAT-GCCAGCGC TTTTTTTACGGAGCC Shewmr4_3181 3801627 - 3802034 + | hypothetical protein TERM 4762 3802563 - 3802545 - g 77 -10.2 -3.5936 | GCGAAAGCCGTGAAA GCCGCGCA AAA TGGGCGGC GACTCAGCTATAAAC Shewmr4_3182 3802076 - 3802576 + | hypothetical protein TERM 4763 3802627 - 3802593 - T 100 -15.9 -3.1634 | opp_overlap 3802594 3802599, overlap 3802599 CGCTAAACGACTTAA GCAAAAGGGCAGAAG TAAAT CTTCTGCCCTTTTGT TTTTTATCGCTTAGT TERM 4764 3802594 - 3802626 + T 100 -19.4 -5.31456 | opp_overlap 3802593 3802599, overlap 3802599 GCTAAACGACTTAAG CAAAAGGGCAGAAG TAAAT CTTCTGCCCTTTTG TTTTTTATCGCTTAG TERM 4765 3802599 - 3802621 + T 100 -13.5 -5.49579 | opp_overlap 3802593 3802599, overlap 3802594 ACGACTTAAGCAAAA GGGCAGAAG TAAAT CTTCTGCCC TTTTGTTTTTTATCG TERM 4766 3802621 - 3802599 - T 100 -13.5 -4.43879 | opp_overlap 3802599 3802594, overlap 3802593 ACGACTTAAGCAAAA GGGCAGAAG TAAAT CTTCTGCCC TTTTGTTTTTTATCG Shewmr4_3183 3803277 - 3802648 - | glutathione S-transferase domain-containing protein TERM 4767 3803369 - 3803354 - R 100 -11.8 -5.63645 | opp_overlap 3803354 GTAAAAGACAAAAAA CGGCGC CGAA GCGCCG TTATCGAATAGTGCA TERM 4768 3803354 - 3803369 + r 89 -11.8 -3.34043 | opp_overlap 3803354 GTAAAAGACAAAAAA CGGCGC CGAA GCGCCG TTATCGAATAGTGCA Shewmr4_3184 3805982 - 3803397 - | TonB-dependent receptor TERM 4769 3805161 - 3805150 - G 73 -5.8 -4.48299 | overlap 3805153 CCATAGTCAAATAAA CAGC TGCC GCTG GCCGTTGCACGATCG Shewmr4_3185 3806182 - 3806724 + | membrane-flanked domain-containing protein TERM 4770 3808033 - 3808047 + G 70 -4.3 -4.652 | TCTCTTGGGTAGGAT TAAGC TATTT GCTTA TTTTTGCAGTGCTTT Shewmr4_3186 3806808 - 3808094 + | putative manganese transporter Shewmr4_3187 3808240 - 3808710 + | hypothetical protein TERM 4771 3808751 - 3808736 - f 91 -10.4 -4.208 | opp_overlap 3808736 GCTTAAAATCACAAA CGCAGC CTAG GCTGCG TTTTTTGTTTTTACC TERM 4772 3808736 - 3808751 + F 100 -10.4 -5.93252 | opp_overlap 3808736 GCTTAAAATCACAAA CGCAGC CTAG GCTGCG TTTTTTGTTTTTACC TERM 4773 3808781 - 3808799 + F 73 -7.4 -4.15453 | opp_overlap 3808778 3808781 CTCGCCGTTAAACAA GCTTTTGC TTG GCAAATGC TTTTACAATCAATTA TERM 4774 3808799 - 3808781 - f 70 -7.4 -3.90744 | opp_overlap 3808781, overlap 3808778 CTCGCCGTTAAACAA GCTTTTGC TTG GCAAATGC TTTTACAATCAATTA TERM 4775 3808873 - 3808862 - f 75 -2.2 -5.40072 | overlap 3808872 TCTGCTGCAAAAAAA GCCA CAAA TAGC GTAAGACACAGGCAA TERM 4776 3809436 - 3809415 - g 76 -2.9 -5.18355 | GCCAAAAAGTAAAAA TCATCGTTG TGAC CGACGGTGA GCGCATCTTAGGCTT Shewmr4_3188 3808979 - 3810667 + | malate dehydrogenase TERM 4777 3810691 - 3810708 + T 100 -12.7 -4.371 | opp_overlap 3810691 ATTATCCAAAAAAAA GCCCGTC AATC GACGGGC TTTTGCTATGCTGCG TERM 4778 3810708 - 3810691 - T 100 -12.7 -5.82316 | opp_overlap 3810691 ATTATCCAAAAAAAA GCCCGTC AATC GACGGGC TTTTGCTATGCTGCG Shewmr4_3189 3811170 - 3810736 - | hypothetical protein Shewmr4_3190 3811722 - 3811195 - | phosphoesterase, PA-phosphatase related TERM 4779 3812569 - 3812547 - g 100 -15 -5.08824 | TCTCTATTTAAAAAA TGGCAACTTG GAT CAAGTTGCCA GTGTCACCTCGGATA TERM 4780 3812804 - 3812815 + G 70 -3 -4.82901 | AGCCTGGGTCTTATA GTTT TATG AAAC TTTTTATGGGGAAAA Shewmr4_3191 3811837 - 3813777 + | diguanylate cyclase Shewmr4_3192 3814576 - 3813779 - | extracellular solute-binding protein Shewmr4_3193 3814741 - 3815922 + | putative iron-sulfur cluster binding protein Shewmr4_3194 3816719 - 3815940 - | ModE family transcriptional regulator TERM 4781 3816867 - 3816900 + H 71 -4 -4.82901 | opp_overlap 3816871, overlap 3816868 CGCATCGGGACTTGA ATGATCGATATATA GATTGG TATATAACGATCAC TTTTTATCACGGAGG TERM 4782 3817037 - 3817018 - g 76 -2.7 -5.16841 | opp_overlap 3817035, overlap 3817020 GCAGACCAAGAAAAA GTGACGG TTTTTG CCGCCGC ATCCCTCACGAATGC Shewmr4_3195 3816922 - 3817707 + | molybdenum ABC transporter, periplasmic molybdate-binding protein modB 3817707 - 3818444 + | molybdate ABC transporter permease protein TERM 4783 3818852 - 3818837 - g 71 -5.4 -4.56597 | TCTGGCGGCGAAAAA CAACGG GTTG CCATTG GCCGTGCCCTGCTCA modC 3818438 - 3819523 + | molybdate transporter ATP-binding protein TERM 4784 3819574 - 3819560 - f 100 -7.1 -5.76633 | opp_overlap 3819560 TCAGACACAAAAAAA CCGAC TCTAG GTCGG TTTGATTCCCTTTGG TERM 4785 3819560 - 3819574 + F 74 -7.8 -3.98173 | opp_overlap 3819560 TCAGACACAAAAAAA CCGACT CTA GGTCGG TTTGATTCCCTTTGG TERM 4786 3819829 - 3819812 - g 70 -11.3 -2.57957 | overlap 3819811 3819809 TAAGCAGGACAATAG CGAGCGT TGGT ACGCTCG GATTAAAGTTGCTGG TERM 4787 3819901 - 3819888 - g 100 -6.7 -5.67529 | AAGGAAAAAGAAAAA GCCAT AGCC ATGGC TCACCGCCTACAAAT TERM 4788 3820997 - 3820985 - g 76 -3.3 -5.09245 | GGAAAAGTATAAAAA GTGGG AAG CACAC TACAAAAAAGTGGGT Shewmr4_3198 3819576 - 3821021 + | phage integrase family protein TERM 4789 3821026 - 3821007 - f 75 -2.1 -5.34555 | GCACACTACAAAAAA GTGGGTT GTATCT AAACCAC ATCAGCATTTTAACC Shewmr4_3199 3821086 - 3821418 + | hypothetical protein Shewmr4_3200 3821495 - 3821755 + | hypothetical protein Shewmr4_3201 3822061 - 3821825 - | XRE family transcriptional regulator Shewmr4_3202 3822348 - 3823601 + | DNA-cytosine methyltransferase TERM 4790 3823596 - 3823628 + T 100 -13.7 -3.65224 | opp_overlap 3823598, overlap 3823590 CAATACGGGCTTAAT CAGTGATTGAGTT CTCTCTA AACTCAATCACTG TTCTTAAGCTAAACT TERM 4791 3823626 - 3823598 - T 76 -11.2 -2.71483 | opp_overlap 3823590 3823596 ATACGGGCTTAATCA GTGATTGAGTTC TCTCT AAACTCAATCAC TGTTCTTAAGCTAAA Shewmr4_3203 3824524 - 3823637 - | hypothetical protein TERM 4792 3824241 - 3824251 + g 83 -5.4 -5.10077 | overlap 3824247 AAGTATAAACGTAAT TCAG AGC CTGA TTTTTTAGGATATTT TERM 4793 3824684 - 3824673 - R 81 -4.4 -5.28481 | CAGGTAACTAAAAAA TCTG AGAG CAGA CTAAACAGGTAAACT Shewmr4_3204 3825630 - 3824791 - | integrase catalytic subunit TERM 4794 3826192 - 3826180 - H 71 -3.4 -4.91977 | opp_overlap 3826180, overlap 3826175 TAGTAAAATAGAAAA GACT TTTTC AGTC TCTTTTTAATCCTTT Shewmr4_3206 3826237 - 3827889 + | hypothetical protein TERM 4795 3827921 - 3827940 + G 79 -12.2 -3.21595 | opp_overlap 3827916 3827913 3827933 TCAAATATCAGTCAT GTTGGTGC AAAA GCACCAAC TTGATAGTGCAGATT TERM 4796 3828586 - 3828576 - g 72 -4 -4.86731 | opp_overlap 3828563 TTCCTTGAAAGAAAA TTCA AGG TGAA TTACGACCAAGCGAC Shewmr4_3207 3827889 - 3829388 + | hypothetical protein TERM 4797 3829481 - 3829445 - f 82 -6.7 -4.79352 | overlap 3829447 TCAGCTACAAGAAAA GAGTCTAGCAATTACAA GCC TCACAATTACTAGACAC AATAAATTTAAATTT TERM 4798 3829479 - 3829447 - f 74 -7.9 -4.01115 | overlap 3829445 AGCTACAAGAAAAGA GTCTAGCAATTACAA GCC TCACAATTACTAGAC ACAATAAATTTAAAT Shewmr4_3208 3829637 - 3831271 + | SecC motif-containing protein Shewmr4_3209 3837088 - 3832025 - | putative transcriptional regulator TERM 4799 3832839 - 3832860 + g 70 -3.1 -4.78077 | overlap 3832835 CTAGGTCCTTGGGAG GTAATATTA TATT TAATTTTAC TTTCTTTTCCTTCCC TERM 4800 3834404 - 3834416 + g 86 -2.7 -5.61881 | TTTATAGACTAACTG TATTG TTT CGATA TTTTTCTTTTTAACA TERM 4801 3836516 - 3836528 + g 72 -4.1 -4.76802 | TAATTCAATAATTGT TGCTA CAT TGGCA TTTATTGTTTTTAGA Shewmr4_3210 3838785 - 3837529 - | DNA-directed DNA polymerase TERM 4802 3839289 - 3839301 + r 71 -3.3 -4.99645 | opp_overlap 3839289 AACGACCTCGACATA GCACC ATT GGTTC TTTTCTTTATCGAAT Shewmr4_3212 3840126 - 3839650 - | hypothetical protein TERM 4803 3839722 - 3839711 - G 70 -4.4 -4.731 | AATCCATTAACAAAA TGCT CATC AGCA CTGTACGCCATCCTC TERM 4804 3840037 - 3840019 - G 70 -8.2 -3.79419 | opp_overlap 3840018, overlap 3840022 TTCTTGGAGAAAAGA CAACGGAT AAA ATCCATTG AATTCATCATGAAAA Shewmr4_3213 3840455 - 3840144 - | hypothetical protein Shewmr4_3214 3840818 - 3840459 - | hypothetical protein TERM 4805 3840730 - 3840714 - G 85 -3.7 -5.4148 | CAAATAACCAAAAAA TGGAATA TGC TCTTCCA CACCCAAATTATGTC Shewmr4_3215 3842117 - 3840873 - | hypothetical protein Shewmr4_3216 3844258 - 3842291 - | hypothetical protein TERM 4806 3844270 - 3844281 + H 71 -4.4 -4.84311 | GCATCATAACCTCAT GAAC GATC GTTC TTTTGTTCTGTGGAC Shewmr4_3217 3844772 - 3845476 + | hypothetical protein TERM 4807 3845537 - 3845571 + F 83 -10.9 -3.40836 | opp_overlap 3845533, overlap 3845532 3845539 GAAAAATAACCGCAC TTGTGATACCATACT CTTAC AGTGTGGTATCACTA TTCCCTTCTTTTTCA TERM 4808 3845539 - 3845569 + F 100 -13.5 -3.25449 | opp_overlap 3845533, overlap 3845537 3845532 AAAATAACCGCACTT GTGATACCATACT CTTAC AGTGTGGTATCAC TATTCCCTTCTTTTT Shewmr4_3218 3845629 - 3846561 + | phage integrase family protein TERM 4809 3848322 - 3848357 + G 72 -9.8 -3.35597 | overlap 3848320 AGTATTGATAGTGCG GTCATGCGCCGATTTG ATTT CAAGTTGGTGTGTGAC TATTTAACGAGTGAC Shewmr4_3219 3846555 - 3848597 + | ATPase central domain-containing protein Shewmr4_3220 3848620 - 3849108 + | hypothetical protein TERM 4810 3849160 - 3849144 - f 71 -10.1 -2.67707 | opp_overlap 3849144, overlap 3849143 3849141 TCATACCAACAACAG GGGGACA TGA TGCCCCC TTTGTTTTGCCACTT TERM 4811 3849144 - 3849160 + F 86 -7.9 -4.66535 | opp_overlap 3849143 3849144 3849141 TCATACCAACAACAG GGGGACA TGA TGCCCCC TTTGTTTTGCCACTT Shewmr4_3221 3849190 - 3849594 + | hypothetical protein Shewmr4_3222 3849724 - 3850056 + | hypothetical protein TERM 4812 3850178 - 3850164 - T 100 -7.1 -5.76633 | TTAGATACAAAAAAA CCGAC TTAAT GTCGG CGGTATGTATGGTAC TERM 4813 3850229 - 3850249 + T 76 -10.5 -2.90714 | overlap 3850231 TCACGCTTTTAAGGG CGGTGGATT TTG AATCCACTG TGTCTACCGATTTCA TERM 4814 3850231 - 3850247 + T 71 -9.5 -3.00215 | overlap 3850229 ACGCTTTTAAGGGCG GTGGATT TTG AATCCAC TGTGTCTACCGATTT TERM 4815 3850315 - 3850296 - T 71 -5 -4.59773 | opp_overlap 3850295 3850288 3850296, overlap 3850298 TTGGAGCTTCAAAAA CTTTGCAA ATCT TTGCAAGG CTTTTGCGTGTTAAT Shewmr4_3223 3852170 - 3850581 - | methyl-accepting chemotaxis sensory transducer TERM 4816 3852148 - 3852169 + g 74 -3.7 -5.04175 | overlap 3852150 3852168 TATCCCATGCTGCCT TTGTTGACA CTGA TGTCAGCCA TTTTTGTCTCCTTCA TERM 4817 3852244 - 3852254 + r 78 -4 -5.1861 | CCGCGGATCTTTGTA TCAT TTA ATGA TTTTTTCGTACTCGA TERM 4818 3852670 - 3852690 + r 100 -14.1 -5.28176 | AATTGCACGTTGTTA TGGGGGTTA AGC TAACCCCCA TTTTTTGTGCCTGCG Shewmr4_3224 3853343 - 3852732 - | hypothetical protein TERM 4819 3854628 - 3854613 - g 86 -9 -4.4874 | TCCAAAAATTTAAAA CGATCG CCAT CGATCG TAGCCATGAAGAACA TERM 4820 3854758 - 3854729 - g 70 -10.1 -3.29613 | overlap 3854717 AAAGCGCAAACCCAA TTAGAGGTTGAGC CAGC GCTCAACATCCAA ACCAATGTTAGCCTG Shewmr4_3225 3853511 - 3855142 + | periplasmic sensor signal transduction histidine kinase TERM 4821 3855247 - 3855218 - T 100 -18.1 -3.76759 | opp_overlap 3855218 3855223, overlap 3855223 ACTAATGCTACCAAA CAAAATCCACAGC ATTG GCTGTGGATTTTG TTTTTAAAGATGAGT TERM 4822 3855218 - 3855247 + T 100 -18.1 -4.60041 | opp_overlap 3855218 3855223, overlap 3855223 ACTAATGCTACCAAA CAAAATCCACAGC ATTG GCTGTGGATTTTG TTTTTAAAGATGAGT TERM 4823 3855223 - 3855242 + T 100 -12.2 -5.26119 | opp_overlap 3855218 3855223, overlap 3855218 TGCTACCAAACAAAA TCCACAGC ATTG GCTGTGGA TTTTGTTTTTAAAGA TERM 4824 3855242 - 3855223 - T 100 -12.2 -4.93877 | opp_overlap 3855223 3855218, overlap 3855218 TGCTACCAAACAAAA TCCACAGC ATTG GCTGTGGA TTTTGTTTTTAAAGA Shewmr4_3226 3856103 - 3855285 - | UBA/THIF-type NAD/FAD binding protein TERM 4825 3856236 - 3856221 - H 81 -5.4 -5.09895 | GATTTAGGCAAAAAA CCGAAA TCTA TCTCGG TCTAGGTATGCCAAG Shewmr4_3227 3856521 - 3857585 + | outer membrane porin, putative TERM 4826 3857621 - 3857648 + F 100 -15.8 -3.62616 | opp_overlap 3857628, overlap 3857628 AGAGATAATATTTGA TAAAAAAGCGGC TTTG GCCGCTTTTTTA TTGTATCTCGTACTA TERM 4827 3857641 - 3857628 - f 100 -9.5 -5.26918 | opp_overlap 3857621 3857628 ATATTTGATAAAAAA GCGGC TTTG GCCGC TTTTTTATTGTATCT TERM 4828 3857628 - 3857641 + F 100 -9.5 -5.62045 | opp_overlap 3857628, overlap 3857621 ATATTTGATAAAAAA GCGGC TTTG GCCGC TTTTTTATTGTATCT TERM 4829 3857984 - 3857972 - f 71 -3.4 -5.07941 | AAAACCACACAAAAA CCAT GAAAA ATGG ATAAGAACTTAGGTT TERM 4830 3858382 - 3858362 - g 79 -6.9 -4.60041 | opp_overlap 3858366 ACTTAGGTTTAAAAA CTAATGCAG GTA CTGTATTAG TGGGTCGTAATGACA Shewmr4_3228 3858016 - 3859086 + | porin TERM 4831 3859132 - 3859115 - T 100 -11.3 -5.48825 | opp_overlap 3859115 TATTAGCGAAAAAAA CCTACCG CCTG CGGTAGG TTTTTTTATACCTCA TERM 4832 3859115 - 3859132 + T 100 -11.3 -5.64274 | opp_overlap 3859115 TATTAGCGAAAAAAA CCTACCG CCTG CGGTAGG TTTTTTTATACCTCA TERM 4833 3859209 - 3859185 - T 100 -7.9 -5.252 | opp_overlap 3859186, overlap 3859186 GATTGTCATAAAAAA GCCACTCAAGT GAC ACTTAAGTGGT TTTAATTCTTGTGCA TERM 4834 3859208 - 3859186 - T 95 -11.4 -3.74397 | opp_overlap 3859186, overlap 3859185 ATTGTCATAAAAAAG CCACTCAAGT GAC ACTTAAGTGG TTTTAATTCTTGTGC TERM 4835 3859186 - 3859208 + T 100 -9.2 -4.59414 | opp_overlap 3859186 3859185 ATTGTCATAAAAAAG CCACTCAAGT GAC ACTTAAGTGG TTTTAATTCTTGTGC Shewmr4_3229 3861524 - 3859248 - | DNA topoisomerase IV subunit A TERM 4836 3861238 - 3861228 - G 74 -6.8 -4.28762 | ATAACGGTATGAAAA TGGC TGC GCCA TCAGTACCATAGCCT Shewmr4_3230 3862692 - 3861517 - | L-sorbosone dehydrogenase, putative TERM 4837 3862326 - 3862316 - G 76 -5.4 -4.78753 | opp_overlap 3862316 TCAATATCAATAAAA CGTA CGA TACG GTTTTCGGTTGCAAC Shewmr4_3231 3864631 - 3862745 - | DNA topoisomerase IV subunit B TERM 4838 3864131 - 3864117 - G 74 -7.1 -4.32402 | GCCGAATCAAAATAA CTGGC GTCGG GCCAG AAATGTACTCGAGTA Shewmr4_3232 3865263 - 3864688 - | hypothetical protein Shewmr4_3233 3866129 - 3865290 - | calcineurin phosphoesterase C-terminal domain-containing protein Shewmr4_3234 3866597 - 3866145 - | hypothetical protein Shewmr4_3235 3867201 - 3866590 - | nucleoside diphosphate pyrophosphatase TERM 4839 3867408 - 3867423 + H 76 -7.6 -4.08706 | opp_overlap 3867407 AACGAAGTTACATAT TTCTCC TTTT GGAGAA TTTGTCTAATAAGGA tolC 3867445 - 3868752 + | outer membrane channel protein TERM 4840 3868765 - 3868807 + T 95 -12.4 -3.37612 | gap 2, opp_overlap 3868765 3868778, overlap 3868766 3868778 3868805 TAAGATAGCGATACA TC--CCATAAAAAAACCGCC TAAAT GGCGGTTTTTTTATGGCTGA TTCATTAGCGTTAAC TERM 4841 3868805 - 3868765 - T 100 -14.2 -2.95068 | opp_overlap 3868765 3868766 3868778, overlap 3868778 TAAGATAGCGATACA TCCCATAAAAAAACCGCC TAAAT GGCGGTTTTTTTATGGCT GATTCATTAGCGTTA TERM 4842 3868766 - 3868804 + T 100 -17.7 -2.84841 | opp_overlap 3868765 3868778, overlap 3868765 3868778 AAGATAGCGATACAT CCCATAAAAAAACCGCC TAAAT GGCGGTTTTTTTATGGC TGATTCATTAGCGTT TERM 4843 3868792 - 3868778 - T 100 -8.5 -5.626 | opp_overlap 3868766 3868765 3868778, overlap 3868765 CATCCCATAAAAAAA CCGCC TAAAT GGCGG TTTTTTTATGGCTGA TERM 4844 3868778 - 3868792 + T 100 -8.5 -5.64274 | opp_overlap 3868778 3868765, overlap 3868766 3868765 CATCCCATAAAAAAA CCGCC TAAAT GGCGG TTTTTTTATGGCTGA Shewmr4_3237 3869520 - 3868825 - | hypothetical protein Shewmr4_3238 3870533 - 3869565 - | hypothetical protein TERM 4845 3869738 - 3869751 + g 84 -2.3 -5.63236 | overlap 3869739 GAATGATCTGTTTCA GGCTG ACCT CAGCA TTTTTCTTTTTCAAT Shewmr4_3239 3871027 - 3870545 - | hypothetical protein Shewmr4_3240 3871062 - 3871799 + | enoyl-CoA hydratase TERM 4846 3871806 - 3871796 - T 70 -5.4 -4.56597 | opp_overlap 3871804 GGCTTTTCTTAAAAA GTGA TGC TCAC TTAAACAGTGTTCAC TERM 4847 3871831 - 3871848 + T 70 -7.7 -3.7282 | gap 1 GTTCACTATTGGCAT GAGGGTCG ATG CG-CCCTC TTGTTGATAGCATCC Shewmr4_3241 3872137 - 3871937 - | phage shock protein C, PspC Shewmr4_3242 3872576 - 3872283 - | hypothetical protein TERM 4848 3872751 - 3872741 - R 73 -5.4 -4.60924 | TAAAGTGGTGAAAAA TGCT ACA AGCA ATAGTCAATCTCACC Shewmr4_3243 3873792 - 3872785 - | tRNA-dihydrouridine synthase A TERM 4849 3873869 - 3873851 - R 72 -7.4 -3.95073 | GCTTAGAGGGATAAA GCGCCTTA ATT TAAGCCGC AGAAGAGCCATGCAG TERM 4850 3873930 - 3873907 - R 100 -9.7 -5.36364 | opp_overlap 3873907 GTAAAAATACAAAAA CAGTAAACG AGTTAA CGTTTACTG TTTTGTTGCCCCTCA TERM 4851 3873907 - 3873930 + r 100 -9.7 -4.64676 | opp_overlap 3873907 GTAAAAATACAAAAA CAGTAAACG AGTTAA CGTTTACTG TTTTGTTGCCCCTCA Shewmr4_3244 3874694 - 3874020 - | putative hydroxylase TERM 4852 3874746 - 3874729 - R 100 -12.7 -4.05181 | overlap 3874722 AGCATAAACATCAAA GGCAGCC CTAG GGCTGCC ATTCAGAACTCGATT Shewmr4_3245 3876965 - 3874770 - | TonB-dependent siderophore receptor Shewmr4_3246 3877523 - 3877987 + | putative chemotaxis protein CheX TERM 4853 3878143 - 3878128 - T 82 -4.6 -5.26316 | TTAGGGCATAAAAAA CGGCAC TAAT GCACCG TTTTCTTGAATCCAC alr 3879244 - 3878168 - | alanine racemase Shewmr4_3248 3880726 - 3879320 - | primary replicative DNA helicase TERM 4854 3879875 - 3879885 + g 76 -6.8 -4.58773 | CTCATCATCGAGCTG TCCG GTA CGGA TTTTAGTTTGGTCGA Shewmr4_3249 3880852 - 3883050 + | dipeptidyl-peptidase 7 TERM 4855 3883136 - 3883173 + F 100 -13.7 -4.12942 | opp_overlap 3883142, overlap 3883142 TAAATTAAGCACCTT TTAAAACCGTTCAAAGA ATAT TCTTTGGACGGTTTTTA TTTTAAGCAATTTGC TERM 4856 3883142 - 3883167 + F 100 -12.7 -5.45802 | opp_overlap 3883142, overlap 3883136 AAGCACCTTTTAAAA CCGTTCAAAGA ATAT TCTTTGGACGG TTTTTATTTTAAGCA TERM 4857 3883167 - 3883142 - f 91 -10.5 -4.10429 | opp_overlap 3883136 3883142 AAGCACCTTTTAAAA CCGTTCAAAGA ATAT TCTTTGGACGG TTTTTATTTTAAGCA TERM 4858 3883552 - 3883521 - f 73 -5.3 -4.72272 | opp_overlap 3883529, overlap 3883529 CTGTTTTATCAAAAA GAATAAAACTTGA TCGTTC TCAAGTTTTTTCC AGAACCAATTTCCTA TERM 4859 3883529 - 3883544 + F 71 -3.3 -5.00616 | opp_overlap 3883529 3883521 TCAAAAAGAATAAAA CTTGA TCGTTC TCAAG TTTTTTCCAGAACCA TERM 4860 3883544 - 3883529 - f 75 -3.3 -5.16681 | opp_overlap 3883529, overlap 3883521 TCAAAAAGAATAAAA CTTGA TCGTTC TCAAG TTTTTTCCAGAACCA TERM 4861 3883617 - 3883597 - f 70 -9.7 -2.51186 | overlap 3883596 AAAACTTACCAATAC GCTTTTGCC ATA GGCATAAGC TGCCAAATAAATACA TERM 4862 3883959 - 3883940 - g 70 -2.8 -4.82901 | opp_overlap 3883943, overlap 3883943 GCTCGCCGATAAAAA TACTACCG TTGT CGGCATTA TCGCTCCGGCGGTGC TERM 4863 3884390 - 3884370 - g 73 -3.2 -5.03314 | overlap 3884371 TGTACCTCGAAAAAA CTCGAAGC CTCAC GCCCCGAA TTTAACTCGGCTTGG Shewmr4_3250 3883686 - 3884918 + | hydrogenases, Fe-only Shewmr4_3251 3884931 - 3885251 + | iron hydrogenase, small subunit Shewmr4_3252 3885265 - 3885948 + | formate dehydrogenase gamma subunit TERM 4864 3885959 - 3885985 + F 100 -16.7 -3.99228 | opp_overlap 3885948 3885949 AATAGCGAGGTCTCC TGCGGCAGTTG CTCAA CAACTGCCGCA TTTCTGCATTCATAT TERM 4865 3887115 - 3887101 - g 73 -2.8 -4.98061 | AGACAGCAAACAAAA TCAACA CGA TGCCGA ACAATTTAGCCTTGG thiH 3886019 - 3887458 + | thiamine biosynthesis protein ThiH Shewmr4_3254 3887459 - 3888097 + | hypothetical protein Shewmr4_3255 3888097 - 3889176 + | biotin synthase Shewmr4_3256 3889160 - 3890398 + | small GTP-binding protein TERM 4866 3890420 - 3890451 + T 83 -8.8 -4.08144 | overlap 3890410 ATTGAGCCTCAGCGT CAGGCTTGGCTG CAATGAAA TAGCTAAGCCTG TTTATCCTTCATGCA TERM 4867 3890512 - 3890543 + T 91 -13.2 -2.73159 | opp_overlap 3890520, overlap 3890515 3890520 ACTAAATCGCGCCCA TAAAAAAACACCGC CGAA GCGGTGTTTTCTTA GTTTAAAGCAGTTGG TERM 4868 3890515 - 3890540 + T 80 -10.5 -3.51411 | opp_overlap 3890520, overlap 3890512 3890520 AAATCGCGCCCATAA AAAAACACCGC CGAA GCGGTGTTTTC TTAGTTTAAAGCAGT TERM 4869 3890535 - 3890520 - T 100 -10.4 -5.60993 | opp_overlap 3890520 3890515 3890512 GCGCCCATAAAAAAA CACCGC CGAA GCGGTG TTTTCTTAGTTTAAA TERM 4870 3890520 - 3890535 + T 100 -10.4 -4.84642 | opp_overlap 3890520, overlap 3890515 3890512 GCGCCCATAAAAAAA CACCGC CGAA GCGGTG TTTTCTTAGTTTAAA rplI 3891014 - 3890562 - | 50S ribosomal protein L9 rpsR 3891278 - 3891051 - | 30S ribosomal protein S18 Shewmr4_3259 3891580 - 3891290 - | primosomal replication protein N rpsF 3891999 - 3891604 - | 30S ribosomal protein S6 Shewmr4_3261 3892212 - 3892967 + | hypothetical protein Shewmr4_3262 3893148 - 3894578 + | major facilitator transporter TERM 4871 3894618 - 3894603 - T 100 -10.4 -5.24989 | opp_overlap 3894603 TTAGACAGTAAAAAA GACGGG CTAG CCCGTC TTTTTATTGAAAACT TERM 4872 3894603 - 3894618 + T 100 -10.4 -5.06816 | opp_overlap 3894603 TTAGACAGTAAAAAA GACGGG CTAG CCCGTC TTTTTATTGAAAACT Shewmr4_3263 3895379 - 3894639 - | 23S rRNA (guanosine-2'-O-)-methyltransferase Shewmr4_3264 3897806 - 3895380 - | RNAse R TERM 4873 3897341 - 3897318 - G 71 -7.4 -4.05714 | ATCGGCAATCACAAA TGCCATGCCG CTAT CGACATGGAA TCGTCCGACAATGGC Shewmr4_3265 3898502 - 3897846 - | Sel1 domain-containing protein TERM 4874 3898580 - 3898606 + r 76 -10.8 -2.54881 | opp_overlap 3898585, overlap 3898579 3898578 3898603 GGAACAACAAAAGAA GAAAAGGCCGTG AAA CACGGCCTCTAC GATTTTAGTTAAATG TERM 4875 3898601 - 3898585 - R 100 -13.7 -5.14949 | opp_overlap 3898580 3898579 3898578 AACAAAAGAAGAAAA GGCCGTG AAA CACGGCC TCTACGATTTTAGTT Shewmr4_3266 3899906 - 3898611 - | adenylosuccinate synthetase TERM 4876 3899998 - 3899984 - R 77 -3.6 -5.1675 | GCATTTATGAAAAAA TAATCA AAA TGACTA GCCCAGCAGTGACCA Shewmr4_3267 3900161 - 3899973 - | hypothetical protein TERM 4877 3900258 - 3900229 - R 93 -12.3 -3.08173 | opp_overlap 3900236, overlap 3900236 ACTAATTTTAGGTAA TAAAAAACCCAGC ATAA GCTGGGTTTTTTG AGATTCCAAAACGTA TERM 4878 3900251 - 3900236 - R 100 -10.4 -5.4833 | opp_overlap 3900236, overlap 3900229 TTAGGTAATAAAAAA CCCAGC ATAA GCTGGG TTTTTTGAGATTCCA TERM 4879 3900236 - 3900251 + r 100 -10.4 -5.09426 | opp_overlap 3900236 3900229 TTAGGTAATAAAAAA CCCAGC ATAA GCTGGG TTTTTTGAGATTCCA rpsI 3900666 - 3900274 - | 30S ribosomal protein S9 rplM 3901109 - 3900681 - | 50S ribosomal protein L13 Shewmr4_3270 3902566 - 3901406 - | AFG1 family ATPase TERM 4880 3902754 - 3902742 - H 73 -5.5 -4.66953 | overlap 3902725 TTAAGACTTGAAAAA GGCCT TAA AAGCC CACAGGTTTCACTTA TERM 4881 3903116 - 3903136 + G 78 -12.5 -2.87132 | overlap 3903108 3903114 TAGAGCGCACGACCC CCGCCGTGG TTT CCGTGGCGG TATCTGGCACGCACG Shewmr4_3271 3902971 - 3904323 + | peptidase Do TERM 4882 3904369 - 3904394 + F 100 -16.3 -3.85389 | opp_overlap 3904374 ATCAGCTGCGGATCA GCATAGGGAAC GCGG GTTCCCTATGC TTTAACTTGTTAAAC TERM 4883 3904505 - 3904517 + G 91 -7.7 -5.1963 | GCTCTTCGGCCTTAT CATGG CGG CCATG TTTTTGTTAGTTACA Shewmr4_3272 3904449 - 3905531 + | DegS serine peptidase TERM 4884 3905591 - 3905555 - f 88 -11 -3.89881 | opp_overlap 3905563, overlap 3905556 ACTAACCTTGATAAA TCTCAGAATGAGGTAT GAATA AAACCTCATTCTGAGC CATCCTAAAATCACC TERM 4885 3905590 - 3905556 - f 100 -14.5 -2.93447 | opp_overlap 3905563, overlap 3905555 CTAACCTTGATAAAT CTCAGAATGAGGTAT GAATA AAACCTCATTCTGAG CCATCCTAAAATCAC Shewmr4_3273 3906364 - 3908055 + | hypothetical protein TERM 4886 3908071 - 3908114 + F 70 -9.6 -2.73681 | opp_overlap 3908071 3908073, overlap 3908083 CGGGGCAATCATCAA CACCCGCTAAGGGTTCATTC CATT GAGTGAACTCTTAGCGTGAA TGCTTAGCCTGAATG TERM 4887 3908112 - 3908073 - f 86 -12.2 -3.20227 | opp_overlap 3908071 3908083, overlap 3908071 GGGCAATCATCAACA CCCGCTAAGGGTTCATTC CATT GAGTGAACTCTTAGCGTG AATGCTTAGCCTGAA Shewmr4_3274 3908298 - 3908675 + | hypothetical protein TERM 4888 3908727 - 3908713 - f 77 -3.6 -5.24416 | CAATCACAATAAAAA TTAAGA TGA TCCTAA AAGCTAATATCCTCA TERM 4889 3908774 - 3908785 + F 75 -7.2 -4.25104 | opp_overlap 3908763, overlap 3908784 ATAATTTGTCCCATA CGGC TCAG GCCG TTTTGCTCAAAGCGA TERM 4890 3909319 - 3909335 + G 76 -6.5 -4.43911 | CAGGCGCGAGTGTAG CAGCCTA TTC TTGGCTG TTTTCCTTCCAATTT Shewmr4_3275 3908865 - 3909989 + | peptidase M50 TERM 4891 3910066 - 3910017 - T 93 -13.4 -2.84961 | gap 3, opp_overlap 3910029, overlap 3910029 TTAAGATAAAAGCGA GAT-AAT-AAAAAACCGCGATAGCC TAG GGC-ATCGCGGTTTTTTTATTTATC AATGATTCAATTAGT TERM 4892 3910029 - 3910052 + T 100 -13.2 -6.02919 | gap 1, opp_overlap 3910017 3910029 CGAGATAATAAAAAA CCGCGATAGCC TAG GGC-ATCGCGG TTTTTTTATTTATCA TERM 4893 3910052 - 3910029 - T 100 -13.2 -5.60689 | gap 1, opp_overlap 3910029, overlap 3910017 CGAGATAATAAAAAA CCGCGATAGCC TAG GGC-ATCGCGG TTTTTTTATTTATCA Shewmr4_3277 3911692 - 3910250 - | periplasmic sensor signal transduction histidine kinase TERM 4894 3910916 - 3910930 + g 74 -4.2 -4.78107 | CTGCTGCCTCGCGAG CTGTTG TTT CACCAG TTTTTGATGCTGCTG Shewmr4_3278 3912453 - 3911692 - | two component transcriptional regulator Shewmr4_3279 3913224 - 3912514 - | hypothetical protein Shewmr4_3280 3913937 - 3913236 - | hypothetical protein TERM 4895 3914797 - 3914842 + G 72 -9.6 -3.36175 | AACGCGTCTATGTGA TTGGCCTGTCCGCCGGTGGC GCCATG GCCAGCGCCGCACTGGTCAA TTATCCCGATTTATT Shewmr4_3281 3914391 - 3915317 + | PHB depolymerase family esterase Shewmr4_3282 3915510 - 3917786 + | TonB-dependent receptor TERM 4896 3917809 - 3917840 + F 100 -13.2 -3.5936 | opp_overlap 3917810 3917813 3917816, overlap 3917810 3917813 3917816 TGTTATTGACGCATA ATAATAACCGACTC CCGT GAGTCGGTTATTAA TTTAACGGCTTTAAA TERM 4897 3917810 - 3917839 + F 100 -16.7 -2.75294 | opp_overlap 3917810 3917813 3917816, overlap 3917809 3917813 3917816 GTTATTGACGCATAA TAATAACCGACTC CCGT GAGTCGGTTATTA ATTTAACGGCTTTAA TERM 4898 3917839 - 3917810 - f 100 -16.7 -3.36878 | opp_overlap 3917810 3917809 3917813 3917816, overlap 3917813 3917816 GTTATTGACGCATAA TAATAACCGACTC CCGT GAGTCGGTTATTA ATTTAACGGCTTTAA TERM 4899 3917813 - 3917836 + F 100 -14 -3.51976 | opp_overlap 3917810 3917813 3917816, overlap 3917810 3917809 3917816 ATTGACGCATAATAA TAACCGACTC CCGT GAGTCGGTTA TTAATTTAACGGCTT TERM 4900 3917836 - 3917813 - f 100 -14 -3.82378 | opp_overlap 3917813 3917810 3917809 3917816, overlap 3917810 3917816 ATTGACGCATAATAA TAACCGACTC CCGT GAGTCGGTTA TTAATTTAACGGCTT TERM 4901 3917816 - 3917833 + F 95 -11.3 -3.89354 | opp_overlap 3917813 3917810 3917816, overlap 3917813 3917810 3917809 GACGCATAATAATAA CCGACTC CCGT GAGTCGG TTATTAATTTAACGG TERM 4902 3917833 - 3917816 - f 100 -11.3 -4.03888 | opp_overlap 3917816 3917813 3917810 3917809, overlap 3917813 3917810 GACGCATAATAATAA CCGACTC CCGT GAGTCGG TTATTAATTTAACGG Shewmr4_3283 3917918 - 3918589 + | two component LuxR family transcriptional regulator TERM 4903 3918648 - 3918620 - T 86 -10.4 -3.87583 | opp_overlap 3918625, overlap 3918625 AAATCCAAACCTAAA GAAAACAGTGGC ACTAA GCCACTGTTTTT TATCCGCATTTATTA TERM 4904 3918643 - 3918625 - T 100 -10.3 -4.96468 | opp_overlap 3918625, overlap 3918620 CAAACCTAAAGAAAA CAGTGGC ACTAA GCCACTG TTTTTTATCCGCATT TERM 4905 3918625 - 3918643 + T 100 -10.3 -5.25803 | opp_overlap 3918625 3918620 CAAACCTAAAGAAAA CAGTGGC ACTAA GCCACTG TTTTTTATCCGCATT Shewmr4_3284 3922194 - 3918688 - | multi-sensor hybrid histidine kinase TERM 4906 3920952 - 3920941 - G 70 -2.2 -5.00616 | GGCGGCGGGAAAAAA CTGC GACA ACAG CACAAAGGATAACAA TERM 4907 3923024 - 3923035 + G 74 -4.4 -4.80455 | GCCCTCACCTACTCG GGAT TATT ATCC TTTTATATTTGCCTA TERM 4908 3923326 - 3923356 + G 79 -8.4 -4.2828 | opp_overlap 3923325 GCTACCTAAGATGAC CAGCCAAAAAATCA CGG TGATTTTTAGCCTG TTTTGGTCCATCAGC Shewmr4_3285 3922352 - 3923527 + | major facilitator transporter TERM 4909 3923651 - 3923633 - g 71 -10.2 -3.15274 | overlap 3923631 3923624 3923622 AAAATATTCAATACA GCCCGCAG CTG CTGCGGGA AAACTTGAACAAACT Shewmr4_3286 3923530 - 3924519 + | alpha/beta hydrolase domain-containing protein TERM 4910 3924543 - 3924579 + T 88 -6.6 -5.10497 | opp_overlap 3924546, overlap 3924546 TTCAAACTCTCCCTC AAAGCACCTACACCCA AGATA TGCTTGTAGGTGCTTA TTTTTTAAGTCGGTT TERM 4911 3924546 - 3924576 + T 91 -8.3 -4.64763 | opp_overlap 3924546, overlap 3924543 AAACTCTCCCTCAAA GCACCTACACCCA AGATA TGCTTGTAGGTGC TTATTTTTTAAGTCG TERM 4912 3924576 - 3924546 - T 71 -8.3 -3.5394 | opp_overlap 3924546 3924543 AAACTCTCCCTCAAA GCACCTACACCCA AGATA TGCTTGTAGGTGC TTATTTTTTAAGTCG TERM 4913 3924634 - 3924673 + T 100 -13.8 -3.9777 | opp_overlap 3924634 3924641, overlap 3924641 AATGGAGTCACACAA TAAAAAACGGGATAGGTA TTGT TACCCATCCCGTTTTGTA TTTCTCAGTCTTACG TERM 4914 3924673 - 3924634 - T 100 -16 -3.52668 | opp_overlap 3924634 3924641, overlap 3924641 AATGGAGTCACACAA TAAAAAACGGGATAGGTA TTGT TACCCATCCCGTTTTGTA TTTCTCAGTCTTACG TERM 4915 3924666 - 3924641 - T 100 -14.1 -5.60689 | opp_overlap 3924634 3924641, overlap 3924634 TCACACAATAAAAAA CGGGATAGGTA TTGT TACCCATCCCG TTTTGTATTTCTCAG TERM 4916 3924641 - 3924666 + T 100 -11.9 -4.84918 | opp_overlap 3924641 3924634, overlap 3924634 TCACACAATAAAAAA CGGGATAGGTA TTGT TACCCATCCCG TTTTGTATTTCTCAG Shewmr4_3287 3926404 - 3924698 - | amidase Shewmr4_3288 3927594 - 3926482 - | agmatine deiminase TERM 4917 3927552 - 3927539 - G 86 -6.7 -4.96848 | opp_overlap 3927539 3927538 GCGGGCATATAAAAA CCATC TTGT GATGG CTTAGTCGTTAACTG TERM 4918 3927905 - 3927924 + r 100 -13.6 -4.30987 | opp_overlap 3927905 AAGCCAATGCAAAAA GGCGAACC ATAA GGTTCGCC TTTGTTATCAAGCCT TERM 4919 3927924 - 3927905 - R 100 -13.6 -4.75776 | opp_overlap 3927905 AAGCCAATGCAAAAA GGCGAACC ATAA GGTTCGCC TTTGTTATCAAGCCT TERM 4920 3928019 - 3927993 - R 89 -12.4 -2.81133 | opp_overlap 3927991 TACTTAGTTAGGACA GCTACCAACCAC ATA GTAATTGGTAGC AGTATTGGCCAAAGT Shewmr4_3289 3930032 - 3927981 - | PHB depolymerase family esterase TERM 4921 3930005 - 3929978 - G 100 -7 -5.24989 | TCAGAGATGAAAAAA GCCCAATTACAA GGAG TAGAAATTGGGC GACGAGACACGATTT TERM 4922 3930038 - 3930052 + r 76 -2.8 -5.27938 | TCCATTTCATTGTTA TCACCT TTA AGGTTA TTTTTGTTTGAAAAT Shewmr4_3290 3931065 - 3930187 - | short-chain dehydrogenase/reductase SDR TERM 4923 3931554 - 3931534 - g 70 -2.4 -5.0538 | opp_overlap 3931548, overlap 3931536 CGCTAGCGGAAAAAA TGCGTGCG GCGGG CGCGGGCA TTCCAGCTTTTTATA TERM 4924 3931548 - 3931561 + G 72 -3.7 -4.82901 | opp_overlap 3931536 3931534 ATGCGTGCGGCGGGC GCGGG CATT CCAGC TTTTTATACCGCAAC Shewmr4_3291 3931206 - 3931913 + | 3-oxoacid CoA-transferase, A subunit Shewmr4_3292 3931923 - 3932582 + | butyryl-CoA:acetate CoA transferase TERM 4925 3932728 - 3932692 - T 84 -10.9 -3.58801 | opp_overlap 3932691 3932690 3932688 ATAGAAGCGGTCAAA GTAGAGAGGGAAATTGC TTA GCGATGTCCATCTCTAC AATCTTCATCATTAC Shewmr4_3293 3933210 - 3932776 - | hypothetical protein Shewmr4_3294 3933627 - 3933220 - | hypothetical protein Shewmr4_3295 3934869 - 3934159 - | hypothetical protein Shewmr4_3296 3935548 - 3935027 - | methylation site containing protein Shewmr4_3297 3935875 - 3936738 + | hypothetical protein Shewmr4_3298 3936770 - 3937516 + | abortive infection protein TERM 4926 3937549 - 3937567 + T 100 -13.2 -5.45726 | opp_overlap 3937549 ACTCGTTAATAAAAA GGGATACC TAA GGTATCCC TTTTTTTACGCTATG TERM 4927 3937567 - 3937549 - T 100 -13.2 -5.06816 | opp_overlap 3937549 ACTCGTTAATAAAAA GGGATACC TAA GGTATCCC TTTTTTTACGCTATG Shewmr4_3299 3939886 - 3937616 - | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Shewmr4_3300 3940086 - 3940991 + | LysR family transcriptional regulator TERM 4928 3941015 - 3941030 + T 100 -10.4 -4.96501 | opp_overlap 3941015 AAACAGCATAAAAAA GCCTGC AATT GCAGGC TTTGTTTTTATGAGC TERM 4929 3941030 - 3941015 - T 100 -10.4 -5.38321 | opp_overlap 3941015 AAACAGCATAAAAAA GCCTGC AATT GCAGGC TTTGTTTTTATGAGC Shewmr4_3301 3941779 - 3941051 - | putative signal transduction protein TERM 4930 3942035 - 3942011 - R 100 -15.9 -4.28819 | opp_overlap 3942015, overlap 3942015 AAACAACAGAAATAA TAAAGCCAGAC TGA GTCTGGCTTTA AAGATTCACTATTGA TERM 4931 3942015 - 3942031 + r 100 -12.3 -3.61268 | opp_overlap 3942011 3942015 AACAGAAATAATAAA GCCAGAC TGA GTCTGGC TTTAAAGATTCACTA TERM 4932 3942031 - 3942015 - R 100 -12.3 -4.66814 | opp_overlap 3942015, overlap 3942011 AACAGAAATAATAAA GCCAGAC TGA GTCTGGC TTTAAAGATTCACTA Shewmr4_3302 3944019 - 3942058 - | TonB-dependent siderophore receptor Shewmr4_3303 3945153 - 3944485 - | hypothetical protein TERM 4933 3944749 - 3944763 + g 72 -8.6 -3.96148 | TTCGTGACCATCCAC TTGGGT ATC ACCCAA TTTCTGATAGACCAC TERM 4934 3945367 - 3945344 - R 81 -7.5 -4.58663 | opp_overlap 3945344 ATGATGGCTTAAAAA GCTGATGAA CCCCGT TTCACCAGC CTTTCGCATTACTCA Shewmr4_3304 3946835 - 3945399 - | hypothetical protein TERM 4935 3946203 - 3946214 + g 74 -3.6 -5.00884 | opp_overlap 3946