TransTermHP v2.07 (built on Jan 21 2009) 25 bins; sample size is 20000000 --pval-conf=/fs/szasmg2/carlk/TTupdate2/expterm.dat --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 --start-cut=0 --end-cut=25 Genes: 0.54148 %AT, 4245381 nt, 31859 terms. Intergenic: 0.608632 %AT, H2T: 583539 nt, 5295 terms; T2T: 193838 nt, 4616 terms; H2H: 241212 nt, 3711 terms. Each terminator entry starts in column 3 and is of the form: term # start - end +/- regionconf hp tail | notes Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. Genes are interspersed, and start the first column. SEQUENCE gi|167621941|ref|NC_010334.1| Shewanella halifaxensis HAW-EB4, complete genome (length 5226917) Shal_0001 81 - 1466 + | chromosomal replication initiation protein TERM 1 1445 - 1459 + F 71 -7.2 -3.80018 | AGATTATGCTAACTT GATAAG AAC CTTATC TTCTTAATATCTGGG TERM 2 2059 - 2041 - g 70 -9.6 -3.09834 | CACCGTATGATCGAA GCCTCTCT ACC AGAGAAGC AGGTGATTGTACCGC Shal_0002 1486 - 2586 + | DNA polymerase III, beta subunit TERM 3 2627 - 2642 + F 100 -7.6 -6.02919 | opp_overlap 2627 TCTTACCAATTAAAA GACTGA TTAA TCAGTC TTTTTTTGTTTCTAA TERM 4 2642 - 2627 - f 78 -7.6 -4.45544 | opp_overlap 2627 TCTTACCAATTAAAA GACTGA TTAA TCAGTC TTTTTTTGTTTCTAA TERM 5 3705 - 3683 - g 78 -6.4 -4.67697 | opp_overlap 3701 TGTTAAAACAACAAA CAGATAAAAA TAG TATTTATCTG GTGGATGATCTTCCA Shal_0003 2806 - 3903 + | DNA replication and repair protein RecF TERM 6 4001 - 3985 - g 73 -10.9 -2.58272 | GAGACCAGGAATGTA CATCGGT GAC ACCGATG ATGGTACAGGTCTAC TERM 7 4633 - 4619 - g 70 -5 -4.43208 | ACACCGGTAAACAAA GAAGTA TTC CACTTC TGCCAAGAGCGTGAA TERM 8 5310 - 5273 - g 74 -3.5 -4.94992 | gap 1 CTAAACGTAGAAAAA GCC-CGTTTTGACAAGAT GCT ATCTTCTCAAGAAGTGGC AACACTGATCACCGC TERM 9 5870 - 5882 + G 71 -7.7 -3.90112 | GAGCCAGTACTCGAT CCTGA GCG TCAGG TTTACTTACCAAAGA Shal_0004 3881 - 6322 + | DNA gyrase, B subunit TERM 10 6357 - 6375 + F 100 -10.3 -5.89827 | opp_overlap 6357 AGAAATTGAGTGAAA TCGGTGC TATAT GCACCGA TTTTTTTTAATAATT TERM 11 6375 - 6357 - f 80 -10.3 -3.70478 | opp_overlap 6357 AGAAATTGAGTGAAA TCGGTGC TATAT GCACCGA TTTTTTTTAATAATT Shal_0005 6360 - 7463 + | putative signal transduction protein TERM 12 7509 - 7482 - T 90 -12.8 -3.70076 | opp_overlap 7488, overlap 7488 GTAAAGTCACTCAAA CAAAAACGCGCC AATC GGCGCGTTTTTT ATATCTGGTTTACTA TERM 13 7503 - 7488 - T 100 -11.8 -5.30616 | opp_overlap 7488, overlap 7482 TCACTCAAACAAAAA CGCGCC AATC GGCGCG TTTTTTATATCTGGT TERM 14 7488 - 7503 + T 100 -11.8 -5.43414 | opp_overlap 7488 7482 TCACTCAAACAAAAA CGCGCC AATC GGCGCG TTTTTTATATCTGGT Shal_0006 9600 - 7531 - | glycyl-tRNA synthetase subunit beta Shal_0007 10517 - 9612 - | glycyl-tRNA synthetase subunit alpha Shal_0008 10636 - 11196 + | DNA-3-methyladenine glycosylase I Shal_0009 11880 - 11215 - | hypothetical protein TERM 15 11972 - 11993 + r 100 -13.1 -5.36441 | opp_overlap 11972 TGTTTTTGTAAAAAA GGATGTTCC ACGT GGAACATCC TTTTTTATATAGAGG TERM 16 11993 - 11972 - R 100 -13.1 -5.00616 | opp_overlap 11972 TGTTTTTGTAAAAAA GGATGTTCC ACGT GGAACATCC TTTTTTATATAGAGG TERM 17 12005 - 12031 + r 100 -13.2 -5.32608 | opp_overlap 12005 12007, overlap 12030 ATCCTTTTTTATATA GAGGACTTCATT AAC AATGAAGTTCTC TTTTTTGACTTTTTT TERM 18 12031 - 12005 - R 77 -11 -2.87211 | opp_overlap 12005 12030, overlap 12007 ATCCTTTTTTATATA GAGGACTTCATT AAC AATGAAGTTCTC TTTTTTGACTTTTTT Shal_0010 15315 - 12121 - | amidohydrolase TERM 19 13371 - 13383 + g 74 -5.5 -4.65895 | opp_overlap 13362 13358 13357 ATGCAACTGTTCCAC GTGGA ACA TCCGC TTTTTGGCTAAAGCC TERM 20 14530 - 14544 + g 72 -2.8 -5.0538 | opp_overlap 14523 CTGAAAACCATCACG CTTGAT GTA AGCAAG TTTTTTACCATCAGG Shal_0011 16085 - 15903 - | hypothetical protein Shal_0012 16365 - 16120 - | SirA family protein Shal_0013 16979 - 16512 - | ybaK/ebsC protein TERM 21 16743 - 16767 + g 79 -12.1 -3.22491 | CATCACTGCCTTTTT GGCTTTCGCCG CCT TGGCGATAGCC TTCATGCTGAGCTTT Shal_0014 17479 - 17018 - | GCN5-related N-acetyltransferase TERM 22 17606 - 17631 + r 80 -10.5 -3.72576 | opp_overlap 17611, overlap 17611 CCGATTCTGAAAACA AAAAAGCCAGC TTGC GCTGGCTTTTG TTTACTCGGGAGCGA TERM 23 17611 - 17626 + r 93 -10.4 -4.93877 | opp_overlap 17611, overlap 17606 TCTGAAAACAAAAAA GCCAGC TTGC GCTGGC TTTTGTTTACTCGGG TERM 24 17626 - 17611 - R 100 -10.4 -5.79595 | opp_overlap 17611 17606 TCTGAAAACAAAAAA GCCAGC TTGC GCTGGC TTTTGTTTACTCGGG Shal_0015 18814 - 17651 - | 3-ketoacyl-CoA thiolase Shal_0016 20986 - 18833 - | multifunctional fatty acid oxidation complex subunit alpha Shal_0017 21349 - 22671 + | proline dipeptidase TERM 25 22813 - 22788 - g 86 -11.3 -3.68569 | opp_overlap 22788 TTACTGATTGAAGAA GAGATAAAGCA TAGT CGCTTTATCTC TTTTCTATTTCACTG TERM 26 22788 - 22813 + G 100 -10.6 -4.80455 | opp_overlap 22788 TTACTGATTGAAGAA GAGATAAAGC ATAGTC GCTTTATCTC TTTTCTATTTCACTG Shal_0018 22740 - 23354 + | hypothetical protein Shal_0019 23478 - 24935 + | TrkH family potassium uptake protein Shal_0020 25075 - 25602 + | protoporphyrinogen oxidase TERM 27 25616 - 25660 + T 93 -10.3 -4.72272 | gap 1, opp_overlap 25622 25629, overlap 25622 25629 AAATCTGCAATAGTT TACG-AACAAAAAAGCCTGC TTAATT GCAGGCTTTTTTGTTATGAA TTTTTGCTAAGCGCA TERM 28 25653 - 25622 - T 100 -16.1 -3.18735 | opp_overlap 25622 25616 25629, overlap 25629 GCAATAGTTTACGAA CAAAAAAGCCTGC TTAATT GCAGGCTTTTTTG TTATGAATTTTTGCT TERM 29 25622 - 25653 + T 100 -16.1 -3.56762 | opp_overlap 25622 25629, overlap 25616 25629 GCAATAGTTTACGAA CAAAAAAGCCTGC TTAATT GCAGGCTTTTTTG TTATGAATTTTTGCT TERM 30 25646 - 25629 - T 95 -8.4 -5.5112 | opp_overlap 25629 25622 25616, overlap 25622 TTTACGAACAAAAAA GCCTGC TTAATT GCAGGC TTTTTTGTTATGAAT TERM 31 25629 - 25646 + T 100 -8.4 -5.56673 | opp_overlap 25622 25629, overlap 25622 25616 TTTACGAACAAAAAA GCCTGC TTAATT GCAGGC TTTTTTGTTATGAAT Shal_0021 25972 - 25667 - | ArsR family transcriptional regulator Shal_0022 26185 - 26724 + | protoporphyrinogen oxidase TERM 32 26732 - 26766 + T 100 -16 -4.19238 | opp_overlap 26741, overlap 26741 CGAAATAAACTCATT AATAAAAAAGCCGCAT TTT ATGCGGCTTTTTTATA TTTTAAAATTGACGA TERM 33 26757 - 26741 - T 100 -12.3 -5.5112 | opp_overlap 26732 26741 CTCATTAATAAAAAA GCCGCAT TTT ATGCGGC TTTTTTATATTTTAA TERM 34 26741 - 26757 + T 100 -12.3 -5.63645 | opp_overlap 26741, overlap 26732 CTCATTAATAAAAAA GCCGCAT TTT ATGCGGC TTTTTTATATTTTAA Shal_0023 28225 - 26783 - | TrkH family potassium uptake protein TERM 35 28094 - 28070 - G 79 -7.8 -4.55287 | overlap 28071 TTGATGCATACAAAA GCTGGCTGCG CTGCC CGCAACCAGA GAGGAGACCATAAAT TERM 36 28093 - 28071 - G 79 -11.3 -3.3269 | overlap 28070 TGATGCATACAAAAG CTGGCTGCG CTGCC CGCAACCAG AGAGGAGACCATAAA Shal_0024 29655 - 28246 - | potassium transporter peripheral membrane component TERM 37 28315 - 28297 - G 76 -7.5 -4.25458 | overlap 28293 AACCTCACCAATAAA CTTCTTG TTTAC CAAGAAG AGGATCACATGGTCG TERM 38 29287 - 29275 - G 70 -4.7 -4.48713 | opp_overlap 29276 29277, overlap 29276 29277 CTCATCAATAATAAA CCCGC CAC GTGGG CGATTGTCTGCATTT Shal_0025 30943 - 29663 - | sun protein TERM 39 30542 - 30563 + g 74 -5.9 -4.64676 | GTTATAAGCTAAGGT GTCGTTATC GGTC GATAATGGC TTTTCTTGGCGCTGA Shal_0026 31915 - 30950 - | methionyl-tRNA formyltransferase Shal_0027 32519 - 31920 - | peptide deformylase TERM 40 32878 - 32867 - g 71 -3.6 -4.85599 | CCCATGTCAGAAAAA GCCC TCAA GGAC GTATCTCTCCCAAAG Shal_0028 32569 - 33669 + | peptidoglycan-binding LysM TERM 41 33694 - 33722 + F 73 -7.4 -4.09685 | overlap 33696 AGTTATACTCATTGT ATCGATGCCATC TTAAT GATGGCATCGTC TTTTAAAGGATAAAC TERM 42 33696 - 33720 + F 100 -14.4 -3.64716 | overlap 33694 TTATACTCATTGTAT CGATGCCATC TTAAT GATGGCATCG TCTTTTAAAGGATAA Shal_0029 33823 - 34842 + | DNA protecting protein DprA Shal_0030 34845 - 35318 + | hypothetical protein TERM 43 35356 - 35341 - T 93 -10.4 -4.73092 | opp_overlap 35341 AGAACCTAAAACAAA GGAGGC CTAA GCCTCC TTTTTTGTACATGGA TERM 44 35341 - 35356 + T 100 -10.4 -5.28176 | opp_overlap 35341 AGAACCTAAAACAAA GGAGGC CTAA GCCTCC TTTTTTGTACATGGA Shal_0031 37366 - 35594 - | collagenase TERM 45 36687 - 36676 - G 71 -7.2 -4.13654 | opp_overlap 36683, overlap 36677 GTGCTAAACGATAAA GGGC TAAT GCCC AGTAGGCATTAGTGC Shal_0032 37503 - 38066 + | DNA topoisomerase type IA Zn finger domain-containing protein Shal_0033 38154 - 38717 + | SUA5/yciO/yrdC domain-containing protein TERM 46 39259 - 39296 + G 79 -9.2 -4.12603 | GTGATGAATACTTCT TCCTTCCACACCGC AATGAAACCC GTGGTGTGGGGGGA TTGTTCTTTGATGAC Shal_0034 38739 - 39653 + | coproporphyrinogen III oxidase Shal_0035 39744 - 40583 + | shikimate 5-dehydrogenase Shal_0036 40614 - 40892 + | hypothetical protein Shal_0037 41495 - 40938 - | carbonic anhydrase TERM 47 42036 - 42019 - H 79 -9.9 -3.6215 | TTAAGTTATTCGAAA TTGCCTC TCAC GAGGCAA TCAAAAAATTACTTA TERM 48 43921 - 43906 - H 77 -6.2 -4.60041 | opp_overlap 43906 43904 43915, overlap 43916 ATTGAGTTCTAAAAA CACTTA ACAT TAAGTG TCTTAGCTTGTTGTT TERM 49 43991 - 43969 - H 73 -2.1 -5.2015 | GCAATAAGATAAAAA TTCTAATTT TGGCG AAAGTAGAA ACCATTAGTTACAGT TERM 50 44558 - 44546 - H 85 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 51 45356 - 45340 - H 86 -9.4 -4.08546 | overlap 45353 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 52 45862 - 45851 - H 72 -4.4 -4.7254 | ACTGTTTATCAAAAA CACA GTAC TGTG CAAACTCGCAAGAGG TERM 53 47411 - 47444 + H 90 -13.3 -2.74144 | opp_overlap 47411 47418, overlap 47418 CTCCGCCAACATAAA GACGAAAGCCTCATC GAAA GATGAGGCTTTTTTC GTTTAAGCATGACGA TERM 54 47444 - 47411 - H 90 -11.1 -4.1891 | opp_overlap 47411 47418, overlap 47418 CTCCGCCAACATAAA GACGAAAGCCTCATC GAAA GATGAGGCTTTTTTC GTTTAAGCATGACGA TERM 55 47418 - 47437 + H 100 -12.2 -5.37593 | opp_overlap 47411 47418, overlap 47411 AACATAAAGACGAAA GCCTCATC GAAA GATGAGGC TTTTTTCGTTTAAGC TERM 56 47437 - 47418 - H 91 -12.2 -4.07089 | opp_overlap 47418 47411, overlap 47411 AACATAAAGACGAAA GCCTCATC GAAA GATGAGGC TTTTTTCGTTTAAGC TERM 57 47463 - 47498 + H 84 -7.8 -4.82154 | gap 1, opp_overlap 47463 TAAGCATGACGATAA GCCCTAACGCTTCTT GTTTATA AAGAA-TGTTAGGGC TTTTTCGTATCCGTT Shal_0038 47722 - 47976 + | hypothetical protein TERM 58 48093 - 48103 + G 74 -6.8 -4.27259 | AGCGGTGAACTCCGA GCGA GAG TCGC TTTTCCGTATCTCTG Shal_0039 48028 - 48477 + | BadM/Rrf2 family transcriptional regulator Shal_0040 49155 - 48463 - | protein of unknown function DUF610 YibQ Shal_0041 50430 - 49225 - | carboxyl-terminal protease Shal_0042 51597 - 50464 - | peptidase M23B TERM 59 51197 - 51212 + g 78 -4.7 -5.01497 | ATACTTGCTGGGGAC TGCTG ATTTAA CAGCA TTTTTGTGTAATCGT TERM 60 51556 - 51573 + g 95 -11.3 -4.37886 | opp_overlap 51556 AGGAAGTGATAGAAA GCCAGCA ATAA TGCTGGC TTTTATAAAAAATCG TERM 61 51573 - 51556 - G 89 -11.3 -4.09509 | opp_overlap 51556 AGGAAGTGATAGAAA GCCAGCA ATAA TGCTGGC TTTTATAAAAAATCG Shal_0043 53414 - 51870 - | phosphoglyceromutase TERM 62 53803 - 53769 - g 100 -9.6 -4.81249 | gap 1 TTCTAAAGTTAAAAA TGTTGATCATCA-AG AAGCGA CTATGATGATCAACA AACAAGACGCTAAAG Shal_0044 53653 - 54087 + | rhodanese domain-containing protein TERM 63 54094 - 54104 + F 70 -3.2 -4.96435 | AAAAGATAGAAGTGT TGGT GTA GCCA TTGTTTTTTTGTTGA TERM 64 54407 - 54417 + G 71 -6.8 -4.07687 | opp_overlap 54407 TTTTGAAACACCAAA CAGC CCA GCTG TTTTCCAAAAAGAGT Shal_0045 54318 - 54803 + | preprotein translocase subunit SecB Shal_0046 54808 - 55827 + | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase TERM 65 55871 - 55887 + F 100 -12.3 -5.93252 | opp_overlap 55871 TAGAGTTGATTAAAA CCGAAGC CTA GCTTCGG TTTTTTGTTTTTCAG TERM 66 55887 - 55871 - f 100 -12.3 -4.27617 | opp_overlap 55871 TAGAGTTGATTAAAA CCGAAGC CTA GCTTCGG TTTTTTGTTTTTCAG Shal_0047 56080 - 57264 + | hypothetical protein Shal_0048 57512 - 58129 + | hypothetical protein Shal_0049 58290 - 59240 + | hypothetical protein TERM 67 59644 - 59624 - g 82 -5.4 -5.22006 | gap 1 GGACTAGAACAAAAA GCCGACCAG CTGG CTGG-CAGC ATGAGTGGTGGCCAG Shal_0050 59237 - 60160 + | ABC transporter related Shal_0051 60157 - 61302 + | ABC-2 type transporter TERM 68 61316 - 61347 + F 71 -6.6 -3.98762 | opp_overlap 61329 AATCTATATCGTCAG CCACTAGTTATAAC CTAG GATATAGCTAGGGG TTTCATCTTCTCGTT Shal_0052 61627 - 62097 + | NLP/P60 protein Shal_0053 63109 - 62177 - | hypothetical protein Shal_0054 64458 - 63133 - | hypothetical protein TERM 69 64161 - 64171 + g 82 -6.8 -4.89852 | opp_overlap 64161 64159 CTAAAATATCGAACA TGGC TAA GCCA TTTTTGTCGATATGG Shal_0055 64809 - 65342 + | molybdenum cofactor biosynthesis protein Shal_0056 65381 - 65491 + | hypothetical protein Shal_0057 65530 - 65640 + | hypothetical protein Shal_0058 65679 - 65885 + | hypothetical protein TERM 70 66143 - 66160 + F 85 -5.5 -5.33405 | overlap 66144 CGATTTCTATCTAAT CCCTAGC TATT GCTAGGC TTTTTGTTTACTGGC TERM 71 66144 - 66159 + F 76 -9 -3.78958 | overlap 66143 GATTTCTATCTAATC CCTAGC TATT GCTAGG CTTTTTGTTTACTGG Shal_0059 66300 - 67958 + | methyl-accepting chemotaxis sensory transducer TERM 72 68032 - 68000 - T 80 -10.6 -3.32844 | opp_overlap 67997 67997 TTTCTGAGGGCACAA CTTGTGCGGGTAAT GAGTG ATTACCCGCGCTAG CCAGTTATAAACCAA Shal_0060 69173 - 68037 - | ABC-2 type transporter TERM 73 68340 - 68328 - G 73 -7.7 -4.19123 | CATAAAGGAGACAAA CAGCT GCA AGCTG GCCGCCATAACCGCC Shal_0061 69933 - 69199 - | ABC transporter related Shal_0062 71527 - 69944 - | TAP domain-containing protein TERM 74 70982 - 71002 + g 74 -5.4 -4.70659 | ATACTGGGTGACATC TGCATCGA GGCTG TCGAGGCA TTTTTGAGTCTCGAC TERM 75 71831 - 71819 - H 77 -6.3 -4.56597 | opp_overlap 71825 TTGTTGCGCTAAAAA CTGTA CTG TACAG GTACACTTGTTAACA TERM 76 72097 - 72084 - g 72 -6.7 -4.329 | overlap 72092 TAATACAGCAACAAA GCCAA GCAC TTGGC GACGCTATTGCGCTC Shal_0063 72038 - 73834 + | AMP-dependent synthetase and ligase TERM 77 73883 - 73851 - f 91 -13 -3.24232 | gap 1, opp_overlap 73859, overlap 73859 CGGGTTTGAAACAGA TAAATAAAGGCACGC ATTA GCGTGCCTTT-TTTA TGCCCATGCTTTATT TERM 78 73876 - 73859 - f 100 -12.7 -4.69487 | opp_overlap 73859, overlap 73851 AAACAGATAAATAAA GGCACGC ATTA GCGTGCC TTTTTTATGCCCATG TERM 79 73859 - 73876 + F 100 -12.7 -5.252 | opp_overlap 73859 73851 AAACAGATAAATAAA GGCACGC ATTA GCGTGCC TTTTTTATGCCCATG Shal_0064 74073 - 74477 + | thioesterase superfamily protein TERM 80 74492 - 74509 + T 71 -6.9 -4.08485 | ATGCAATTGGTATGA GGCCCTT GAAC ATGGGCC TTTAGTTTGAGTGAG Shal_0065 74803 - 74528 - | hypothetical protein Shal_0066 75310 - 74882 - | thioesterase superfamily protein TERM 81 74925 - 74935 + g 75 -3.2 -5.15381 | overlap 74920 74919 TTAATTAACTCAGGC GTCA GCT TGGC TTTTTTCCCTGTCTT TERM 82 75459 - 75477 + r 83 -8.9 -4.04295 | opp_overlap 75459 TATAGAGACAAAAAA GGCATTC ATAAA GAATGCC TTTCGTTCTAATTAA TERM 83 75477 - 75459 - R 95 -8.9 -5.4492 | opp_overlap 75459 TATAGAGACAAAAAA GGCATTC ATAAA GAATGCC TTTCGTTCTAATTAA TERM 84 75516 - 75499 - R 70 -8.5 -3.29727 | overlap 75497 75507 75508 TCTAATTAATCAATA GAGCTAA ATGC TTAGCTC TGCAAAGCTGCTAAT Shal_0067 76179 - 75502 - | 2,3-diketo-5-methylthio-1-phosphopentane phosphatase Shal_0068 77485 - 76436 - | lytic transglycosylase catalytic TERM 85 77538 - 77551 + H 89 -6.7 -5.26119 | opp_overlap 77538 77537 ATGGTTGGGCATAAC CCTCA TAGT TGAGG TTTTATTTTTCAAAC TERM 86 77637 - 77651 + H 78 -7.1 -4.37886 | opp_overlap 77637 TTTGATAAAAATTTA TGGGC TATAC GCCCA TTTTATAGAGCATCA TERM 87 77742 - 77728 - H 77 -8.6 -3.93658 | AATAGCGGTAAACAA TCAAGC TGC GCTTGA TAAAGGTCGTGAGCT TERM 88 77896 - 77865 - H 79 -11.6 -2.60798 | gap 1, overlap 77864 77895 GGATAAATCACTAAC GCTTCCGATGGGGCA TCC TGCCCCG-CGAAAGC TACGCCGACATCCCT TERM 89 77922 - 77895 - H 72 -8.4 -3.53012 | overlap 77865 77864 77899 TCCTGCCCCGCGAAA GCTACGCCGACA TCCC TGTCGGCATCAC GTGACTCTGGTTTAT TERM 90 77918 - 77899 - H 72 -10 -2.64155 | overlap 77895 GCCCCGCGAAAGCTA CGCCGACA TCCC TGTCGGCA TCACGTGACTCTGGT Shal_0069 78106 - 79353 + | AAA ATPase Shal_0070 79346 - 80005 + | hypothetical protein TERM 91 80416 - 80398 - T 76 -8.9 -3.72141 | ACAGCGACACCCAAA CGATGAG CATGC CTCATCG CTCAGGCATTACACT Shal_0071 81658 - 80432 - | imidazolonepropionase TERM 92 82441 - 82474 + G 73 -7.5 -4.17491 | gap 1 CCTGTTTACAGATCA CTCGCCGTA-CTTGGT CGC GCCAAGGTGTGGTGAG TTTTGCACGTTTAGT Shal_0072 81834 - 82538 + | histidine utilization repressor TERM 93 82659 - 82646 - f 74 -5.3 -4.79451 | ACCGTAAATATAAAA GCTTA AAAA TAAGC TGATAAGAAAAACAC Shal_0073 82702 - 84366 + | urocanate hydratase TERM 94 85700 - 85688 - g 73 -7.7 -4.10657 | TGACATGTCTGAAAA CACTC GTG GAGTG CTGGCGGTTGAATTG Shal_0074 84387 - 85919 + | histidine ammonia-lyase TERM 95 85946 - 85971 + T 84 -12.7 -3.02263 | opp_overlap 85952, overlap 85952 85961 TAAGTAAGCAGATAG TAAAAAGGGCC CTAA GGCCCTTTTTG TCTTAAAGGGCATAT TERM 96 85965 - 85952 - T 93 -9.5 -4.85129 | opp_overlap 85946 85952 85961 AGCAGATAGTAAAAA GGGCC CTAA GGCCC TTTTTGTCTTAAAGG TERM 97 85952 - 85965 + T 93 -9.5 -5.0916 | opp_overlap 85952, overlap 85946 85961 AGCAGATAGTAAAAA GGGCC CTAA GGCCC TTTTTGTCTTAAAGG Shal_0075 86402 - 85995 - | GCN5-related N-acetyltransferase Shal_0076 86747 - 87673 + | LysR family transcriptional regulator TERM 98 87721 - 87702 - T 100 -12.2 -5.73672 | opp_overlap 87702 AAACAATTAAAAAAA TACCGCAG CATG CTGCGGTA TTTTTTGGGGGATTC TERM 99 87702 - 87721 + T 100 -12.2 -5.03145 | opp_overlap 87702 AAACAATTAAAAAAA TACCGCAG CATG CTGCGGTA TTTTTTGGGGGATTC Shal_0077 88142 - 87756 - | putative endoribonuclease L-PSP TERM 100 88162 - 88185 + r 75 -8.1 -4.12474 | ATTTCCTGTTTTTAT CTGTGACGG ACTACG CCGCCACAG TTATTGTTATTCGTT Shal_0078 89630 - 88218 - | Na+/H+ antiporter NhaC TERM 101 89570 - 89590 + g 71 -3.9 -4.84527 | opp_overlap 89573, overlap 89571 GACCGACCATGGTCA ACAGTGGAA CCA TTCCACCGA TTTTTCCTATATGAA TERM 102 89705 - 89730 + r 100 -10.5 -6.37666 | opp_overlap 89707, overlap 89707 ATAAAGTTTGGCCAA AATGCCTGAGA AAAC TCTCAGGCATG TTTTTTTTATTTTGT TERM 103 89707 - 89728 + r 100 -13.1 -4.77908 | opp_overlap 89707, overlap 89705 AAAGTTTGGCCAAAA TGCCTGAGA AAAC TCTCAGGCA TGTTTTTTTTATTTT TERM 104 89728 - 89707 - R 100 -13.1 -4.0896 | opp_overlap 89707 89705 AAAGTTTGGCCAAAA TGCCTGAGA AAAC TCTCAGGCA TGTTTTTTTTATTTT Shal_0079 90767 - 89748 - | 1-aminocyclopropane-1-carboxylate deaminase TERM 105 90317 - 90307 - G 71 -6.8 -4.0802 | opp_overlap 90307 AGCGGAATAACGAAA GGCT TAT AGCC TTCTGTCACTAGCTC Shal_0080 91600 - 90860 - | hypothetical protein TERM 106 91817 - 91793 - R 100 -10 -5.37593 | opp_overlap 91793 91791 GCTTAAACGAAAAAA GCCACAAGGA GGTTA CCCTTGCGGC TGTCTTTAAACCTGT Shal_0081 92510 - 91842 - | hypothetical protein TERM 107 92665 - 92642 - R 73 -6.8 -4.28774 | gap 1, opp_overlap 92644 92644, overlap 92644 TTAGTGAACGTAAAA CACCAACCCTA AGT TAGGGTTAG-G TTGGTGTCAGTAAAG TERM 108 92664 - 92644 - R 80 -10.5 -3.74381 | opp_overlap 92644 92644, overlap 92642 AGTGAACGTAAAACA CCAACCCTA AGT TAGGGTTAG GTTGGTGTCAGTAAA Shal_0082 93087 - 92692 - | hypothetical protein TERM 109 93108 - 93133 + r 90 -11.3 -3.8591 | opp_overlap 93108 93104 TCCTAGAATAATGAA TGAGGGGAAAT GCAG ATTTCCCTTCA TTGTTACTTGTGAGC TERM 110 93133 - 93108 - R 74 -9.1 -3.58208 | opp_overlap 93108, overlap 93104 TCCTAGAATAATGAA TGAGGGGAAAT GCAG ATTTCCCTTCA TTGTTACTTGTGAGC Shal_0083 94327 - 93176 - | iron-containing alcohol dehydrogenase Shal_0084 95243 - 94707 - | hypothetical protein TERM 111 94919 - 94905 - G 75 -11.4 -3.07344 | GTATTCGGTAATATA GGCGGT CGC ACCGCC ATAGAGGCTCAAATC TERM 112 95596 - 95579 - g 71 -7 -4.07885 | TATTTCTTCGTAAAA CGTGGT GTCGTG ACCACG ATGAATCTAGTTATC Shal_0085 95438 - 96691 + | MscS mechanosensitive ion channel TERM 113 96729 - 96712 - T 90 -11.3 -3.79906 | opp_overlap 96712 TGATTGGTATAAGAA GCCAGCT TGAA AGCTGGC TTTTATTTTCAGGCT TERM 114 96712 - 96729 + T 95 -11.3 -5.08255 | opp_overlap 96712 TGATTGGTATAAGAA GCCAGCT TGAA AGCTGGC TTTTATTTTCAGGCT Shal_0086 97458 - 96832 - | lysine exporter protein LysE/YggA TERM 115 97506 - 97479 - R 86 -9.1 -4.34267 | opp_overlap 97479, overlap 97482 TTATACAATTTAAAA TGACTGGCAGC ACTATA GCCGCCAGACA TTATTTAGGCAATCT TERM 116 97503 - 97482 - R 73 -9.4 -3.14977 | opp_overlap 97479, overlap 97479 TACAATTTAAAATGA CTGGCAGC ACTATA GCCGCCAG ACATTATTTAGGCAA Shal_0087 98110 - 97559 - | phospholipid/glycerol acyltransferase Shal_0088 98253 - 98675 + | hypothetical protein Shal_0089 99672 - 98905 - | hypothetical protein TERM 117 99718 - 99681 - R 73 -8.6 -3.67954 | TAAACATAGCTCAAA TCTAAGTCATGGATAC AGGTTA ATGCCCATGACTTAGA AAAGCTAGCTAGAAC Shal_0090 101381 - 99753 - | hypothetical protein TERM 118 101648 - 101662 + G 84 -8.6 -4.67755 | TGATAATGGACCCTT TAGGCA ACT TGCCTA TTTTTGCATCGATAT Shal_0091 101599 - 102195 + | multiple antibiotic resistance (MarC)-related protein TERM 119 103039 - 103027 - g 76 -7.7 -4.29302 | GCGATATGAAAATAA TGCTC AAT GAGCA ATCGGGTTATCGCGC TERM 120 104054 - 104066 + G 74 -3.3 -5.03405 | overlap 104055 GATGCAGATGTATGA TCCAG AAT CTGGC TTTTTCTATGATATT Shal_0092 102372 - 104537 + | glycoside hydrolase family protein Shal_0093 104681 - 104983 + | hypothetical protein Shal_0094 104985 - 107789 + | peptidase M6 immune inhibitor A TERM 121 107810 - 107825 + T 100 -6.8 -6.04324 | overlap 107811 ACTCGCCGCATGAAG TGCCCT AGTT AGGGCG TTTTTTATTTTTTGC TERM 122 107811 - 107824 + T 77 -8.1 -4.18934 | overlap 107810 CTCGCCGCATGAAGT GCCCT AGTT AGGGC GTTTTTTATTTTTTG Shal_0095 108411 - 107848 - | chorismate lyase Shal_0096 108565 - 108966 + | flagellar basal body-associated protein FliL-like protein Shal_0097 109024 - 110166 + | putative SAM-dependent methyltransferase TERM 123 110196 - 110164 - T 100 -17.3 -3.07487 | opp_overlap 110170, overlap 110170 CGAGATGTGGAAAAT TAAAAAGCTGATGAG CAG CTCATCAGCTTTTCA GTACGCAGTTCTATC TERM 124 110170 - 110190 + T 100 -14.1 -4.18197 | opp_overlap 110164 110170 GTGGAAAATTAAAAA GCTGATGAG CAG CTCATCAGC TTTTCAGTACGCAGT TERM 125 110190 - 110170 - T 100 -14.1 -5.0925 | opp_overlap 110170, overlap 110164 GTGGAAAATTAAAAA GCTGATGAG CAG CTCATCAGC TTTTCAGTACGCAGT Shal_0098 111203 - 110298 - | DNA binding domain-containing protein TERM 126 110614 - 110598 - G 75 -9.5 -3.54424 | GTTCAGCTCTTCAAA TGAAGCA CCT TGCTTCA TTAACCACTGCTCAA Shal_0099 112093 - 111251 - | formate dehydrogenase subunit FdhD TERM 127 111720 - 111744 + g 83 -4.2 -5.31877 | TCGCCGTAAACCGTG CCTTGACCAC AGCCA GTGGTAACGG TTTTTTCTGATAACT TERM 128 112183 - 112196 + H 71 -5.2 -4.5954 | AGATCACATTTATCG GGGC TGGGTC GCCC TTTTATGTCCTATCA Shal_0100 112377 - 112844 + | hypothetical protein TERM 129 113287 - 113276 - g 75 -3 -5.09895 | GAGTTAGCTAAAAAA GTAT TCCG ATAC ATGGTCAAAGATGAA Shal_0101 112841 - 113503 + | hypothetical protein TERM 130 114423 - 114411 - g 73 -7.7 -4.11692 | TACCTATCTGCAAAA GCTAG TCA CTAGC TTCCGCTCTCAGGCG TERM 131 114872 - 114884 + G 73 -4.1 -4.82901 | ATGAGCAAGCGGCAT CAGTT GAT AGCTG TTTTTCTCAAAGCAA Shal_0102 113653 - 115332 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 132 115857 - 115847 - g 72 -8.2 -3.69333 | GATAACTTAGCTAAA GCGC CAA GCGC GGCATTTTATGCAAC Shal_0103 115343 - 116017 + | cytoplasmic chaperone TorD family protein Shal_0104 116192 - 116389 + | formate dehydrogenase region TAT target TERM 133 117113 - 117127 + G 72 -8.6 -3.745 | TTGTGAAGCTCACCC TGTTGC GAT GCAACA TATTTTGATCGGTAA Shal_0105 116409 - 119258 + | molybdopterin oxidoreductase TERM 134 119484 - 119502 + G 70 -2.4 -4.93296 | overlap 119477 119501 ATGCACCTTGTATGG CAGTTTGT CCT GCAGATTG TTTTTATCGTACTGA TERM 135 119726 - 119736 + G 71 -6.8 -4.03978 | AACCGTATTGCTGAA GGCA AGC TGCC TTTGTGTGCAGAATT Shal_0106 119285 - 119872 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shal_0107 119926 - 120933 + | formate dehydrogenase, gamma subunit TERM 136 120981 - 120961 - f 100 -11.1 -5.32882 | opp_overlap 120961 TATCAGCATAAAAAA TGCCTCGAC TCA GTCGGGGCA TTTTTATTTTTGTAG TERM 137 120961 - 120981 + F 100 -13.3 -5.69262 | opp_overlap 120961 TATCAGCATAAAAAA TGCCTCGAC TCA GTCGGGGCA TTTTTATTTTTGTAG Shal_0108 121639 - 121836 + | formate dehydrogenase region TAT target Shal_0109 121855 - 124710 + | molybdopterin oxidoreductase TERM 138 124939 - 124957 + G 71 -7.4 -3.85698 | overlap 124919 124941 ATGCACCTTGTATGG CTGTTTGC CCA GCAAACTG TTTCTACAAGACAGA Shal_0110 124740 - 125309 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 139 125372 - 125336 - f 77 -10.2 -3.33492 | TGAGTTAGTCCATAA TCGCTGCAAGCTGTCT TACTG AGCTAGCTTGCAGCAA TCAGGAGGTGACATG Shal_0111 125385 - 126365 + | formate dehydrogenase, gamma subunit TERM 140 126391 - 126411 + F 100 -16.9 -5.99154 | opp_overlap 126391 ATTATTATCTTTAAA TGCCCCGAC TCA GTCGGGGCA TTTTTTTATTTAATA TERM 141 126411 - 126391 - f 100 -16.9 -3.58522 | opp_overlap 126391 ATTATTATCTTTAAA TGCCCCGAC TCA GTCGGGGCA TTTTTTTATTTAATA Shal_0112 127390 - 127587 + | formate dehydrogenase region TAT target Shal_0113 127606 - 130479 + | molybdopterin oxidoreductase TERM 142 130708 - 130726 + G 71 -7.4 -3.85698 | overlap 130688 130710 ATGCACCTTGTATGG CTGTTTGC CCA GCAAACTG TTTCTACAAGACAGA Shal_0114 130509 - 131078 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 143 131098 - 131147 + F 76 -10.9 -2.55351 | gap 1, opp_overlap 131105, overlap 131097 TAAATATTAAGTTAG TCCATAATCGCTGCAAGCTGTCTA TTT TAGGTGGCTTGCAGCAATCA-GGA GTTGATATGAACAAA TERM 144 131141 - 131105 - f 70 -8.7 -3.33969 | opp_overlap 131098 131097 TAAGTTAGTCCATAA TCGCTGCAAGCTGTCTA TTT TAGGTGGCTTGCAGCAA TCAGGAGTTGATATG TERM 145 131802 - 131812 + G 74 -6.8 -4.25104 | opp_overlap 131798 131801 TTTAAAGGCAAGCAT CCTG ATG CAGG TTTTGCTAACGCGGG Shal_0115 131154 - 132137 + | formate dehydrogenase, gamma subunit TERM 146 132162 - 132187 + F 93 -10.5 -5.04597 | opp_overlap 132162 CACTTAATGCCTAAA CACCTCAGCTA TTAG TAGTTGGGGTG TTTTTATATGTGGAT Shal_0116 132396 - 133724 + | coproporphyrinogen III oxidase TERM 147 133795 - 133817 + F 87 -6.3 -5.27938 | gap 1, opp_overlap 133795 CCTAGACCAAAGAAA GGGTGATGCT TAAG GGC-TCACCC TTTTTGTTTAAGCAT TERM 148 133817 - 133795 - f 73 -5.6 -4.53602 | gap 1, opp_overlap 133795 CCTAGACCAAAGAAA GGGTGATGC TTAAGG GC-TCACCC TTTTTGTTTAAGCAT Shal_0117 133910 - 134752 + | ribokinase-like domain-containing protein TERM 149 134839 - 134861 + F 79 -10.6 -3.24281 | overlap 134837 134836 134841 ATTTTATAACTCTAA TGCCCTGTTG TTC CGACAGGGTA TCCTTTTATCTATGC TERM 150 134841 - 134859 + F 79 -11 -3.17377 | overlap 134839 134837 134836 TTTATAACTCTAATG CCCTGTTG TTC CGACAGGG TATCCTTTTATCTAT Shal_0118 134992 - 136449 + | diguanylate cyclase Shal_0119 136560 - 137258 + | MOSC domain-containing protein Shal_0120 137290 - 137637 + | hypothetical protein TERM 151 137700 - 137665 - T 95 -12.1 -4.57341 | opp_overlap 137670, overlap 137670 AAGTGCTCTGAAAAA TAAAATGCCTATCGA TGATAT TCGATAGGCATTTTT GTTTGGTTCTTTACT TERM 152 137695 - 137670 - T 100 -12 -5.26119 | opp_overlap 137670, overlap 137665 CTCTGAAAAATAAAA TGCCTATCGA TGATAT TCGATAGGCA TTTTTGTTTGGTTCT TERM 153 137670 - 137695 + T 100 -12 -5.39681 | opp_overlap 137665 137670 CTCTGAAAAATAAAA TGCCTATCGA TGATAT TCGATAGGCA TTTTTGTTTGGTTCT Shal_0121 139385 - 137736 - | electron-transferring-flavoprotein dehydrogenase TERM 154 138672 - 138642 - G 86 -13.2 -3.34534 | overlap 138636 CATATGATACATGAA GCCGCCACCAGAGG CGC CCTCTGTGAGCGGC CAGCCACCGGTGTGC TERM 155 138864 - 138876 + g 70 -9.1 -3.46068 | overlap 138862 GTGTAGTTCCATGCC CGGCT CAT AGCCG TCTTTAGGTTGACCA Shal_0122 139766 - 140746 + | molybdenum cofactor biosynthesis protein A Shal_0123 140829 - 141353 + | molybdenum cofactor biosynthesis protein B Shal_0124 141427 - 141903 + | molybdenum cofactor biosynthesis protein C Shal_0125 141912 - 142163 + | molybdopterin converting factor, subunit 1 TERM 156 142460 - 142488 + G 73 -4.6 -4.79667 | gap 1, overlap 142461 142468 GTGTCACGAGTGCTC ATCGCAAGGCAGC CTTT GCTGC-TTGTGAG TTTTTGATCGATTTT Shal_0126 142165 - 142617 + | molybdopterin biosynthesis MoaE protein TERM 157 142624 - 142612 - f 83 -4.8 -5.24531 | opp_overlap 142612 ATGTGGGATAAAAAA GCGT AGCAA ACGC TTTAATTCAAGGAGT Shal_0127 142648 - 143427 + | molybdenum ABC transporter, periplasmic molybdate-binding protein TERM 158 143864 - 143878 + G 78 -5 -4.9934 | GCCCGGCGTGTTAAC CGCAAT GGT ATTGTG TTTTTCTCATGTTCT Shal_0128 143427 - 144107 + | molybdate ABC transporter, inner membrane subunit Shal_0129 144088 - 145203 + | ABC transporter related Shal_0130 145325 - 145675 + | hypothetical protein Shal_0131 145720 - 146241 + | hypothetical protein Shal_0132 146245 - 146922 + | two component transcriptional regulator TERM 159 147478 - 147463 - gf 74 -9 -3.46602 | TCTCGTACAGTACAA CCGCTT GAGC AAGCGG ATTGAACAGGGGCAA Shal_0133 146891 - 148228 + | histidine kinase Shal_0134 148280 - 148969 + | pseudouridine synthase Rlu family protein TERM 160 149106 - 149091 - f 77 -6.1 -4.57073 | opp_overlap 149079 149089, overlap 149078 TAGGGGCCTTAAAAA GCCCT TACATT AGGGC TATGAATTTCTAGGT Shal_0135 149164 - 149643 + | phosphopantetheine adenylyltransferase Shal_0136 149650 - 151149 + | hypothetical protein TERM 161 151185 - 151161 - f 80 -10.7 -3.34609 | opp_overlap 151163, overlap 151159 151155 151163 CTAGCTAAATGAATA GAGCCAACGCC AAA AGCGTTGGCTT TTTCGTATTGAAAAA TERM 162 151163 - 151183 + F 100 -12.6 -4.87626 | opp_overlap 151161 151159 151155 151163 AGCTAAATGAATAGA GCCAACGC CAAAA GCGTTGGC TTTTTCGTATTGAAA TERM 163 151183 - 151163 - f 91 -13.3 -3.23532 | opp_overlap 151163, overlap 151161 151159 151155 AGCTAAATGAATAGA GCCAACGCC AAA AGCGTTGGC TTTTTCGTATTGAAA TERM 164 151712 - 151697 - g 77 -3.3 -5.14563 | TTCGCCATGAAAAAA GTACT GGCCAA AGTAC CGCGCTGCATACTGG Shal_0137 151495 - 152226 + | glycosyl transferase family protein Shal_0138 152229 - 152894 + | SNARE associated Golgi protein Shal_0139 152949 - 154676 + | glycosyl transferase family protein Shal_0140 156751 - 155936 - | formamidopyrimidine-DNA glycosylase TERM 165 156098 - 156115 + g 79 -9.9 -3.73775 | overlap 156101 ATTGGTAAAGTCCTT CAAGGTG GTGC CACCTTG TTTAATGGCACTAGC Shal_0141 157300 - 156848 - | hypothetical protein TERM 166 157416 - 157432 + H 71 -6.5 -4.2803 | overlap 157411 157417 ACCACTTTTTGGTGC ATCAGGC TGC GCCTGAC TTTTAAGTTAGACTG TERM 167 157417 - 157431 + H 75 -10 -3.16336 | overlap 157411 157416 CCACTTTTTGGTGCA TCAGGC TGC GCCTGA CTTTTAAGTTAGACT TERM 168 157569 - 157555 - H 70 -8.6 -3.34895 | TGCAGCGGTAAGCAA TCAAGC TGC GCTTGA TAAAAATCGTGAGCT TERM 169 157596 - 157576 - H 80 -6.1 -4.82901 | overlap 157577 157578 TGCGCTTGATAAAAA TCGTGAGCT TCC AGCTCACAC TCGGCCAAGAGGGGA TERM 170 157595 - 157577 - H 77 -9.6 -3.49419 | overlap 157576 157578 GCGCTTGATAAAAAT CGTGAGCT TCC AGCTCACA CTCGGCCAAGAGGGG TERM 171 157594 - 157578 - H 76 -10.9 -2.6933 | overlap 157577 157576 CGCTTGATAAAAATC GTGAGCT TCC AGCTCAC ACTCGGCCAAGAGGG TERM 172 157597 - 157636 + H 71 -7.2 -3.90922 | opp_overlap 157607, overlap 157600 157605 GCTTCCAGCTCACAC TCGGCCAAGAGGGGAT CAACAGCA ATCCCCTCTTGCCTAA TTCTTTCACAAGAGT TERM 173 157600 - 157633 + H 78 -11.1 -3.02371 | opp_overlap 157607, overlap 157597 157605 TCCAGCTCACACTCG GCCAAGAGGGGAT CAACAGCA ATCCCCTCTTGCC TAATTCTTTCACAAG TERM 174 158292 - 158273 - H 74 -5 -4.7629 | TTATGAAGCGAAAAA TCTGAGAT TAAG AGCTCAGA ACCAAGGGGTTGATA Shal_0142 158420 - 160450 + | Ig domain-containing protein TERM 175 160469 - 160493 + F 100 -13.7 -4.57516 | opp_overlap 160469 160473, overlap 160473 TTTCTCTCGATACCA TAAAGGGCGCT TAT AGTGCCCTTTA TTTTGCTTTCAATCT TERM 176 160493 - 160469 - f 79 -11.5 -2.62184 | opp_overlap 160469 160473, overlap 160473 TTTCTCTCGATACCA TAAAGGGCGCT TAT AGTGCCCTTTA TTTTGCTTTCAATCT TERM 177 160473 - 160489 + F 93 -10.1 -4.82998 | opp_overlap 160473 160469, overlap 160469 TCTCGATACCATAAA GGGCGCT TAT AGTGCCC TTTATTTTGCTTTCA TERM 178 160489 - 160473 - f 75 -7.9 -4.0162 | opp_overlap 160469 160473, overlap 160469 TCTCGATACCATAAA GGGCGCT TAT AGTGCCC TTTATTTTGCTTTCA TERM 179 160580 - 160594 + F 93 -10 -4.74103 | opp_overlap 160580 CACATTGGTAATGCA TCAGGC TGC GCCTGA TTTTTAAGTTAGACG TERM 180 160594 - 160580 - f 72 -10 -2.53581 | opp_overlap 160580 CACATTGGTAATGCA TCAGGC TGC GCCTGA TTTTTAAGTTAGACG TERM 181 160667 - 160653 - f 72 -10 -2.70354 | overlap 160649 CGTTTGATAAATCTA TCAGGC TGC GCCTGA CCAACGTCGTGGGAT TERM 182 160893 - 160862 - f 79 -11.6 -2.60798 | gap 1, overlap 160861 160892 GGATAAATCACTAAC GCTTCCGATGGGGCA TCC TGCCCCG-CGAAAGC TAACCCGACATCCCT TERM 183 160919 - 160892 - f 72 -8.4 -3.53012 | overlap 160862 160861 160897 TCCTGCCCCGCGAAA GCTAACCCGACA TCCC TGTCGGGCTCAC GTGATTTATTCCAAC TERM 184 160914 - 160897 - f 85 -11.3 -3.27525 | overlap 160892 CCCCGCGAAAGCTAA CCCGACA TCCC TGTCGGG CTCACGTGATTTATT TERM 185 161610 - 161592 - g 73 -2.4 -5.13741 | overlap 161593 CTAATTTAATAAAAA GCCAAATC CAT GATTTAGA TGACGATGAATTTAA Shal_0143 161411 - 162193 + | hypothetical protein TERM 186 162252 - 162225 - T 100 -15 -4.87803 | opp_overlap 162225 162230, overlap 162230 TAGCCCTAAATAAAA CAAAACCCGACA GTGA CGTCGGGTTTTG TGTATATAGCACAAG TERM 187 162225 - 162252 + T 95 -14.3 -2.98823 | opp_overlap 162225 162230, overlap 162230 TAGCCCTAAATAAAA CAAAACCCGAC AGTGAC GTCGGGTTTTG TGTATATAGCACAAG TERM 188 162247 - 162230 - T 93 -9.1 -5.34857 | opp_overlap 162225 162230, overlap 162225 CTAAATAAAACAAAA CCCGACA GTGA CGTCGGG TTTTGTGTATATAGC TERM 189 162230 - 162247 + T 87 -8.4 -4.64844 | opp_overlap 162230 162225, overlap 162225 CTAAATAAAACAAAA CCCGAC AGTGAC GTCGGG TTTTGTGTATATAGC Shal_0144 163333 - 162347 - | molybdenum cofactor biosynthesis protein A TERM 190 163168 - 163188 + g 73 -11.1 -2.55999 | opp_overlap 163169, overlap 163167 CACCTAATTCGGTAA AGGCTTGGG CGA CCCAAGCCA ATTCCTCTAGGCTAA TERM 191 163187 - 163169 - G 95 -14.6 -3.5774 | opp_overlap 163168 163167 ACCTAATTCGGTAAA GGCTTGGG CGA CCCAAGCC AATTCCTCTAGGCTA TERM 192 163270 - 163252 - G 72 -10.2 -2.81133 | opp_overlap 163251, overlap 163262 CACTCATGCAGTACA CGCAGCGA AAG TCGCAGCG GTCTGTGACGGATAG Shal_0145 165153 - 163354 - | molybdopterin-guanine dinucleotide biosynthesis protein B TERM 193 164137 - 164189 + g 79 -8.4 -4.27316 | opp_overlap 164153, overlap 164136 164140 AGCAGCAAGAGCGGT TGCACCTTGTGCAATATCTTCGCC CGCTT GGCGAATATGTTGCCCTAGGCTCA TTTTGCCTTCAAAGC TERM 194 165176 - 165203 + r 85 -5.6 -5.19328 | gap 1, overlap 165179 165181 TCTAGTAATTTTTCT CATTAGCTATGGC TTC GCCA-AGCTGCTG TTTTTGTTCTGGCGT Shal_0146 165764 - 165162 - | molybdopterin-guanine dinucleotide biosynthesis protein A TERM 195 165378 - 165401 + g 70 -8.8 -3.42503 | AACGGGTTGCTCACG CTTGCCATCG CTAG CGACGGCGAG TTCTGCGTCTTCAGC Shal_0147 166561 - 165815 - | ABC transporter related Shal_0148 167274 - 166567 - | binding-protein-dependent transport systems inner membrane component TERM 196 167247 - 167227 - G 100 -12.6 -4.4078 | opp_overlap 167229 TGGGTCCAATGAAAA CAGCAGGC TTAAT GCCTGCTG TATAAGGGCTAACCA Shal_0149 168083 - 167271 - | extracellular solute-binding protein TERM 197 168369 - 168343 - H 76 -7.2 -4.24963 | CATAATGAGTCAAAA TGTCCCTCCATA AGA CAGGGTGGGACA GAGAATGAATAATAT Shal_0150 168374 - 169744 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 198 169865 - 169887 + G 75 -2.7 -5.17744 | gap 1, overlap 169869 GACCTTGTTGCCTAT CC-TACTCAC ACTT GTGAGTTTGG TTTTTATTACTATCT TERM 199 169869 - 169882 + G 75 -6.7 -4.43037 | overlap 169865 TTGTTGCCTATCCTA CTCAC ACTT GTGAG TTTGGTTTTTATTAC Shal_0151 169773 - 171911 + | histidine kinase TERM 200 172051 - 172033 - T 100 -13.2 -5.81412 | TTCAGGCAAAAAAAA GCCGAGAT AAT ATCTCGGC CAAAAGAGTGTGTGA TERM 201 172338 - 172320 - T 100 -8.1 -5.83822 | TACAGGCAAAAAAAA GCCGAGA AATCA TCCCGGC CACTTAAGAGTGTGT Shal_0152 172987 - 172529 - | GCN5-related N-acetyltransferase Shal_0153 173775 - 173116 - | hypothetical protein TERM 202 174031 - 174051 + r 100 -14.1 -3.85539 | opp_overlap 174031 GCTAATGTTAAAAAA GACAGCAGA GAG TCTGCTGTC TTTGATATACCTATG TERM 203 174051 - 174031 - R 100 -14.1 -5.09426 | opp_overlap 174031 GCTAATGTTAAAAAA GACAGCAGA GAG TCTGCTGTC TTTGATATACCTATG Shal_0154 179365 - 174080 - | GLUG domain-containing protein TERM 204 174933 - 174953 + g 89 -11.3 -4.04806 | AGGCCAGCCTCAACC TCAATCAAG TGG CTTGATTGA TTATTTACTATGGCA TERM 205 175955 - 175975 + g 80 -9.7 -3.8917 | AGGTTCGGGTAAGTT GATGACGGG TAA CCCTTCATC TTCTTCTCGTTCCAG TERM 206 177172 - 177185 + g 72 -3.1 -5.07486 | TATAACTAAAGCTGT CTGCT CCGA AGTAG TTTTTGTTAGGGGTA TERM 207 179779 - 179794 + r 71 -7.6 -3.95153 | opp_overlap 179779 GGTCGGCAGCCAAAA TCGCTT AGAA AAGCGA TTTATAGATGGTTCG TERM 208 179794 - 179779 - R 76 -7.6 -4.18018 | opp_overlap 179779 GGTCGGCAGCCAAAA TCGCTT AGAA AAGCGA TTTATAGATGGTTCG TERM 209 179933 - 179954 + r 70 -8.7 -3.41602 | opp_overlap 179936 TATCATGGTGTTATA CTAGCCGGT GTTC GTCGGCTAG TTATACTGCACTCAA Shal_0155 181375 - 180017 - | isochorismate synthase Shal_0156 181815 - 183764 + | TonB-dependent receptor plug Shal_0157 183782 - 185233 + | ABC transporter related TERM 210 185456 - 185488 + G 73 -11.2 -2.54916 | opp_overlap 185456, overlap 185455 185454 CACCGCTCTACTCAA GTTAGGGGCGGCGC AGCTA GCGCTGACCCTACC GCTTTATTATCTATT Shal_0158 185223 - 185915 + | cobalt transport protein Shal_0159 185915 - 186460 + | hypothetical protein Shal_0160 186509 - 187270 + | hypothetical protein Shal_0161 187298 - 187513 + | hypothetical protein Shal_0162 187755 - 188939 + | metal dependent phosphohydrolase TERM 211 188960 - 188980 + F 100 -9.7 -5.36441 | ATTTTGCTCATTTAG GCGCCGA TAGCAAC TCGGCGC TTTTTTGTATCGCCA Shal_0163 189172 - 189837 + | ThiJ/PfpI domain-containing protein TERM 212 190188 - 190167 - T 100 -12.3 -4.42639 | ACACCGCAATGAAAA GCAGCGCCT ATAA AGGCACTGC CAGTCAACAAGATTC Shal_0164 191363 - 190425 - | hypothetical protein TERM 213 191564 - 191576 + r 72 -9.1 -3.28712 | CATCACTTCGAGAGC GCGAC GAT GTCGC TTCTAGAAAAGGCAA TERM 214 191800 - 191772 - R 100 -14.7 -3.48276 | opp_overlap 191779, overlap 191779 CCTTTCTTGAGATAA CAAAAAAGCCGCT AAT AGCGGCTTTTTAG GGGTGTTTGTTAAGT TERM 215 191793 - 191779 - R 100 -11.4 -5.60689 | opp_overlap 191779, overlap 191772 TGAGATAACAAAAAA GCCGCT AAT AGCGGC TTTTTAGGGGTGTTT TERM 216 191779 - 191793 + r 93 -11.4 -4.62904 | opp_overlap 191779 191772 TGAGATAACAAAAAA GCCGCT AAT AGCGGC TTTTTAGGGGTGTTT Shal_0165 193001 - 191823 - | diaminopropionate ammonia-lyase Shal_0166 193471 - 193088 - | putative endoribonuclease L-PSP Shal_0167 194172 - 193492 - | YheO domain-containing protein TERM 217 193553 - 193569 + g 80 -9.5 -4.0098 | opp_overlap 193550 ATACTTAAATGATTA GCAACTA TGT TAGTTGC TTCTTTCAATTCAAA TERM 218 194456 - 194471 + H 83 -9 -4.09685 | CTAAAACGGTTTTCC GGTCAC TTTA GTGACC TTTTGGCAAATAGGC Shal_0168 194513 - 195679 + | peptidase M24 TERM 219 195729 - 195687 - f 73 -9.4 -3.22938 | gap 1, opp_overlap 195694, overlap 195685 TCAAATAACTTAATA TAGCCATTGATTTCTCCGG AGGGAG CCGGAGAAATCATTA-CTA AAAGAGCATCTCATT TERM 220 195694 - 195723 + F 100 -15.2 -3.14211 | opp_overlap 195687 195685 ACTTAATATAGCCAT TGATTTCTCCGG AGGGAG CCGGAGAAATCA TTACTAAAAGAGCAT Shal_0169 195745 - 196524 + | Asp/Glu racemase Shal_0170 196564 - 197550 + | hypothetical protein TERM 221 197590 - 197608 + F 100 -14.6 -4.51812 | AATCAATTTTTATCA CCGGTGAC CTA GTCACCGG TTTGTTGTTATAAGA Shal_0171 197633 - 198787 + | amidohydrolase TERM 222 198831 - 198854 + T 100 -11.8 -5.2189 | opp_overlap 198831 CAGTGTTTAGATTAA GGCTATGAGC TTAG GTTCATAGCC TTTTTTGATCCTTGG TERM 223 198854 - 198831 - T 73 -9.6 -3.2614 | opp_overlap 198831 CAGTGTTTAGATTAA GGCTATGAGC TTAG GTTCATAGCC TTTTTTGATCCTTGG TERM 224 199236 - 199205 - T 79 -11.6 -2.60798 | gap 1, overlap 199204 199235 GGATAAATCACTAAC GCTTCCGATGGGGCA TCC TGCCCCG-CGAAAGC TAACCCGACATCCCT TERM 225 199262 - 199235 - T 72 -8.4 -3.53012 | overlap 199205 199204 199240 TCCTGCCCCGCGAAA GCTAACCCGACA TCCC TGTCGGGCTCAC GTGATTTATTCCAAC TERM 226 199257 - 199240 - T 85 -11.3 -3.27525 | overlap 199235 CCCCGCGAAAGCTAA CCCGACA TCCC TGTCGGG CTCACGTGATTTATT Shal_0172 200906 - 199692 - | hypothetical protein TERM 227 202174 - 202194 + G 72 -3.2 -4.98061 | overlap 202176 CTGCAGTGGGGGCGC TGGGTGGC TGTAC GCTACCGA TTTTATTTGGTCTGT Shal_0173 201090 - 202364 + | major facilitator transporter Shal_0174 203171 - 202530 - | two component LuxR family transcriptional regulator TERM 228 202635 - 202662 + g 76 -8.4 -4.03474 | TTTCACCGTGGAGTC GGTGATCCCCAA TTTG TTGGCGATCTCC TTATTACTTTTTCCT Shal_0175 204961 - 203201 - | histidine kinase Shal_0176 205341 - 206945 + | major facilitator transporter TERM 229 207038 - 207010 - f 100 -14.8 -3.63878 | overlap 207004 ATATAACAATGAGAA GTGGATGATATC GGCAA GATATCATCCAC TCAAATGCGAAAATG TERM 230 207324 - 207338 + G 73 -10 -3.45023 | opp_overlap 207331 TCCAGATCTGCCTAA CCACGA ACC TCGTGG TTGTCCTCGTGGTGC Shal_0177 207064 - 210828 + | nitrate reductase, alpha subunit Shal_0178 210840 - 212378 + | nitrate reductase, beta subunit Shal_0179 212383 - 213117 + | nitrate reductase molybdenum cofactor assembly chaperone Shal_0180 213128 - 213805 + | respiratory nitrate reductase, gamma subunit TERM 231 213816 - 213856 + F 100 -10.5 -5.58074 | GTTAATTTACTCATC GGGCTCAGTTTTAGGTGGT GTT ACTACTTATTATTGAGCCC TTTTTTTAGTAATTA Shal_0181 213950 - 214765 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 232 214816 - 214839 + T 100 -10.4 -5.72616 | gap 1 AACCGCATGTCTCAG CCCCTACCGTT AAT AACG-TAGGGG TTTTTTTCTCTAAAT Shal_0182 215309 - 214812 - | HPP family protein? TERM 233 215088 - 215074 - G 73 -2.1 -5.26875 | TTCGGAATTAAAAAA TAGCA AGTGA TGCCA ATAAAGGCGGCAATC TERM 234 215114 - 215094 - G 73 -7.5 -4.18488 | overlap 215107 AGTGATGCCAATAAA GGCGGCAAT CAG ATGGCCACC AATCAGTGGCCATGG TERM 235 215280 - 215262 - G 74 -3.8 -5.01732 | overlap 215250 AAGGGTGGCAAAAAA TGCCCCAA TGA TTGATGCA ATGACTTCGGTGTTG Shal_0183 215996 - 215586 - | ribonucleotide reductase, alpha subunit Shal_0184 217821 - 216010 - | protein serine/threonine phosphatase TERM 236 216430 - 216448 + g 71 -10.2 -2.75074 | opp_overlap 216428, overlap 216428 GGGGTCGGAGTAACT GGCGGTGC CAA GCACCCCC TCGTGTTCCAGTGGA Shal_0185 219286 - 217811 - | major facilitator transporter TERM 237 218633 - 218656 + g 79 -4.6 -5.22039 | gap 1, overlap 218634 218652 AAAGAAGTCTTTCCA ACTGGTG-ACT TCA AGTCCACCAGA TTTTTTGGGTTTAAA TERM 238 218634 - 218655 + g 72 -8.1 -3.72139 | gap 1, overlap 218633 218652 AAGAAGTCTTTCCAA CTGGTG-ACT TCA AGTCCACCAG ATTTTTTGGGTTTAA TERM 239 219556 - 219531 - R 77 -8.4 -3.9444 | opp_overlap 219533 GAAAGCTCAACTAAA GACCATGAAA ACAGAG CTTCATGGTC TCTCAGGTATTGCTG Shal_0186 220477 - 219584 - | transporter DMT superfamily protein TERM 240 220521 - 220499 - R 74 -6.3 -4.46212 | opp_overlap 220492 CTTCTCATCATAAAA GGAGACC GTGTATGTT GGTCTCC AACAGGCTTGAACGA Shal_0187 220716 - 220549 - | amidohydrolase TERM 241 220971 - 221003 + H 85 -7.1 -4.93696 | gap 1, opp_overlap 220966, overlap 220975 TTAAACATTAGCTAT C-TGACAGCCATGC CTTATT GCATGGCTGTTGTG TTTTTGATCTTTGGC TERM 242 220975 - 220998 + H 93 -12.5 -4.1193 | opp_overlap 220966, overlap 220971 ACATTAGCTATCTGA CAGCCATGC CTTATT GCATGGCTG TTGTGTTTTTGATCT Shal_0188 221091 - 222191 + | NADH:flavin oxidoreductase/NADH oxidase TERM 243 222198 - 222241 + F 85 -7.4 -4.88129 | overlap 222204 222206 GCCGCTTAAGCTTAT GATTGCATGGTTGGCACGAT TACT ATCGTGCCAACCTCTTTATC TTTTTCCTAATTTTT TERM 244 222204 - 222235 + F 93 -11.6 -4.58297 | overlap 222198 222206 TAAGCTTATGATTGC ATGGTTGGCACGAT TACT ATCGTGCCAACCTC TTTATCTTTTTCCTA TERM 245 222206 - 222233 + F 100 -18.6 -3.87576 | overlap 222204 222198 AGCTTATGATTGCAT GGTTGGCACGAT TACT ATCGTGCCAACC TCTTTATCTTTTTCC Shal_0189 222693 - 224645 + | choline/carnitine/betaine transporter TERM 246 224678 - 224714 + T 72 -9 -3.38281 | gap 1, overlap 224673 CCGTTTGGCGTATTA GCTC-TATGTCAGTAAA AGGA TTTACTGACATATGACC TTAAGTTTTAGATAC TERM 247 224752 - 224736 - T 100 -12.3 -5.4251 | opp_overlap 224736 TTTAGATACAAAAAA GCCGCTT AAT AAGCGGC TTTTTTATTTGTAAT TERM 248 224736 - 224752 + T 100 -12.3 -5.73978 | opp_overlap 224736 TTTAGATACAAAAAA GCCGCTT AAT AAGCGGC TTTTTTATTTGTAAT Shal_0190 226130 - 224775 - | glutathione reductase Shal_0191 226937 - 226461 - | hypothetical protein Shal_0192 227927 - 227145 - | hypothetical protein TERM 249 229076 - 229049 - g 73 -10.6 -3.00946 | overlap 229046 TTTTCTCATAAATCA CTGGCGACTAAG ATGG CTGAGTCACCAG CACAAGTCTTAGACT TERM 250 229946 - 229928 - g 71 -3.8 -4.76041 | GAGATCCAGCAAAAA CTCGATGA GGT TCGTCAAG AGGTTGCGGTAATCG Shal_0193 228203 - 230242 + | oligopeptidase A TERM 251 230276 - 230316 + F 95 -14.9 -2.5409 | opp_overlap 230289, overlap 230289 TTAACTGTCGATATC CATCTGTAAAAAAGGCGCT TAA AGCGCCTTTTTTACATGCG TCAGTTCACACTTGT TERM 252 230289 - 230303 + F 95 -11.4 -5.09895 | opp_overlap 230289, overlap 230276 TCCATCTGTAAAAAA GGCGCT TAA AGCGCC TTTTTTACATGCGTC TERM 253 230303 - 230289 - f 95 -11.4 -5.03314 | opp_overlap 230289 230276 TCCATCTGTAAAAAA GGCGCT TAA AGCGCC TTTTTTACATGCGTC Shal_0194 230394 - 230966 + | hypothetical protein Shal_0195 231610 - 230963 - | glutathione S-transferase domain-containing protein Shal_0196 231805 - 232494 + | 3-methyladenine DNA glycosylase TERM 254 233602 - 233584 - g 73 -9.6 -3.33162 | opp_overlap 233599 GAGCTGATTTTAGAA GACGGTAC TCC GTACCATC ATACTGGTGTGTTGC Shal_0197 232852 - 234003 + | RND family efflux transporter MFP subunit Shal_0198 234013 - 237171 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 255 237232 - 237202 - T 93 -13.5 -3.04322 | gap 1, opp_overlap 237203 237209, overlap 237209 GTTAATGCGCTAAGA CTAAAAAGCCCAGC AGAT GCTGGGCTTTTT-G TTATCTTAAATATAG TERM 256 237203 - 237232 + T 100 -15.9 -3.70446 | opp_overlap 237202 237209, overlap 237209 TTAATGCGCTAAGAC TAAAAAGCCCAGC AGAT GCTGGGCTTTTTG TTATCTTAAATATAG TERM 257 237226 - 237209 - T 100 -12.7 -4.87626 | opp_overlap 237203 237209, overlap 237202 CGCTAAGACTAAAAA GCCCAGC AGAT GCTGGGC TTTTTGTTATCTTAA TERM 258 237209 - 237226 + T 100 -12.7 -5.29716 | opp_overlap 237209 237202, overlap 237203 CGCTAAGACTAAAAA GCCCAGC AGAT GCTGGGC TTTTTGTTATCTTAA TERM 259 237475 - 237512 + T 72 -10 -2.55019 | opp_overlap 237491, overlap 237478 237479 TTTCCGTCTTAGCTT TTCCTAGGTCCTAG AACCTCGCAC CTAGGACCTAGGAC CTACTTTTTAAGCTT TERM 260 237478 - 237516 + T 88 -8.8 -4.7416 | opp_overlap 237491, overlap 237475 237479 CCGTCTTAGCTTTTC CTAGGTCCTAGAACCTCG CAC CTAGGACCTAGGACCTAC TTTTTAAGCTTTTCC TERM 261 237479 - 237515 + T 87 -12.3 -3.43411 | opp_overlap 237491, overlap 237475 237478 CGTCTTAGCTTTTCC TAGGTCCTAGAACCTCG CAC CTAGGACCTAGGACCTA CTTTTTAAGCTTTTC Shal_0199 238105 - 237548 - | phosphodiesterase TERM 262 238672 - 238686 + G 73 -4.2 -4.82901 | ATCGTGCTGGTTTCG CTGCTG GGC TGGCAG TTTTTGTGGGGGGAG Shal_0200 238336 - 239733 + | permease TERM 263 239889 - 239918 + T 77 -8.7 -3.79533 | gap 1, overlap 239887 TGTCTCAGCTTTTCC TAGGACCTA-GTAC CTC GAACCTAGGTCCTA TCTTTTACTCCTTTC TERM 264 239997 - 239954 - T 70 -8.8 -3.28924 | gap 1, opp_overlap 239956, overlap 239958 CAGTCTTTTCTAGAA GTGACGAAGTCGCGTCCTCGC AGG GCGAAGCC-CGACCTCGTCTT TGCACTTCCTAGAAC TERM 265 239956 - 239995 + T 88 -11.4 -3.67976 | gap 1, opp_overlap 239954 239958 GTCTTTTCTAGAAGT GACGAAGTCGCGTCCTCGC AGG GCGAAGCC-CGACCTCGTC TTTGCACTTCCTAGA TERM 266 239993 - 239958 - T 83 -12.6 -2.59431 | gap 1, opp_overlap 239956, overlap 239954 CTTTTCTAGAAGTGA CGAAGTCGCGTCCTCGC AGG GCGAAGCC-CGACCTCG TCTTTGCACTTCCTA Shal_0201 241653 - 240034 - | AbgT putative transporter TERM 267 242137 - 242125 - R 72 -9.1 -3.28791 | opp_overlap 242120 AGCTTTTCCCTAGAA CCTCG CAC CGAGG ACCTATCTTTTAATC TERM 268 242207 - 242164 - R 80 -11 -3.29043 | gap 1, opp_overlap 242160 242168, overlap 242168 AATCCTTTCCTAGAA GTGACGAAGTCGCGCTCTCGC AGG GCGA-AGCCCGACCTCGTCTT AGCCTTTCCTAGAAC TERM 269 242168 - 242203 + r 85 -12.6 -3.13382 | gap 1, opp_overlap 242164 242168, overlap 242160 CTTTCCTAGAAGTGA CGAAGTCGCGCTCTCGC AGG GCGA-AGCCCGACCTCG TCTTAGCCTTTCCTA TERM 270 242203 - 242168 - R 95 -14.8 -2.59431 | gap 1, opp_overlap 242168 242160, overlap 242164 CTTTCCTAGAAGTGA CGAAGTCGCGCTCTCGC AGG GCGA-AGCCCGACCTCG TCTTAGCCTTTCCTA Shal_0202 243848 - 242229 - | AbgT putative transporter TERM 271 244137 - 244117 - H 100 -9.8 -5.81412 | TTCAGGCAAAAAAAA GGACTCAT ATAGG ATGAGTCC AAAAGGGATTGATTA Shal_0203 244721 - 245290 + | LemA family protein TERM 272 245306 - 245331 + F 86 -11.1 -3.84639 | overlap 245307 TCCCTCCTTATCATT GCTGCAGCGCA GAGT TGCGCTGCGGA TTCTTGTCGCTATTA TERM 273 245307 - 245330 + F 95 -14.6 -2.9006 | overlap 245306 CCCTCCTTATCATTG CTGCAGCGCA GAGT TGCGCTGCGG ATTCTTGTCGCTATT Shal_0204 245375 - 246397 + | hypothetical protein TERM 274 246923 - 246945 + G 72 -8.4 -3.71848 | CCGAGCAAAATATCT TGGCGGGTAG CCG CTACCTGGCA TTGTTACTCAAGCGC Shal_0205 246394 - 247107 + | lytic transglycosylase catalytic Shal_0206 248498 - 247116 - | multidrug efflux pump VmrA TERM 275 247771 - 247755 - G 71 -7.3 -4.0827 | ATACAGGTACATAAA TAGGCTC GAT GAACCTA AGAGTACGATCTGCT TERM 276 248736 - 248749 + G 88 -8.1 -4.78107 | opp_overlap 248728, overlap 248726 CAATTTAGAGGCCGG GCTCG GCTT CGAGC TTTTTGATCGTAGTG Shal_0207 248605 - 249483 + | LysR family transcriptional regulator Shal_0208 249677 - 249934 + | hypothetical protein TERM 277 250249 - 250278 + T 73 -7.9 -3.93367 | opp_overlap 250251 CTAGGACCTCGAACC TAGGTCCTAGCAC CTAG GTCCTAGCACCTA TCTTTTATTCAGGCA Shal_0209 251125 - 250283 - | hypothetical protein TERM 278 251011 - 251029 + g 85 -6 -5.28176 | overlap 251013 CTGCATGGGTGTCGA TATAAGCC ATT GGCTTATC TTTTTTGTGCATGAG TERM 279 251013 - 251027 + g 79 -8.6 -4.2748 | overlap 251011 GCATGGGTGTCGATA TAAGCC ATT GGCTTA TCTTTTTTGTGCATG Shal_0210 252417 - 251182 - | transcriptional regulator, CadC TERM 280 252938 - 252906 - R 93 -10.5 -5.09426 | opp_overlap 252909 252936, overlap 252907 252908 TCGAACGCTAAAAAA GTTGCAGCTCAACGC AGA GCGTTGAGCTGCTTG ATGTGCTTGCAGGGA TERM 281 252937 - 252907 - R 95 -14 -3.64933 | opp_overlap 252909 252936, overlap 252906 252908 CGAACGCTAAAAAAG TTGCAGCTCAACGC AGA GCGTTGAGCTGCTT GATGTGCTTGCAGGG TERM 282 252936 - 252908 - R 100 -17.5 -2.78237 | opp_overlap 252909, overlap 252907 252906 GAACGCTAAAAAAGT TGCAGCTCAACGC AGA GCGTTGAGCTGCT TGATGTGCTTGCAGG TERM 283 252909 - 252935 + r 100 -21 -3.32647 | opp_overlap 252908 252907 252906 AACGCTAAAAAAGTT GCAGCTCAACGC AGA GCGTTGAGCTGC TTGATGTGCTTGCAG TERM 284 252971 - 252996 + r 70 -7.7 -3.70081 | gap 1, overlap 252995 TCAATTACTATTTGC GGTGT-TAACCT TAA AGGTTATGCACC TTCTTAAGGTTGTCT Shal_0211 255275 - 252981 - | hypothetical protein TERM 285 255413 - 255425 + H 77 -7.7 -4.14615 | TTAGGCCGATTTCAG CAGCT TTG AGCTG TTTTGAGGAATTTTT TERM 286 255485 - 255464 - H 76 -7.3 -4.18164 | AATTGCGCAAAATAA GCCTGATTT CGGT AAAACAGGC GCTCGCTGTCGATAT Shal_0212 255560 - 256321 + | hypothetical protein TERM 287 256408 - 256388 - T 95 -11.2 -4.87133 | opp_overlap 256388 ACCTTTTAAACAAAA GCCTAGCT GTGTT AGCTAGGC TTTATTGTATAAGCT TERM 288 256388 - 256408 + T 95 -11.9 -4.39329 | opp_overlap 256388 ACCTTTTAAACAAAA GCCTAGCTG TGT TAGCTAGGC TTTATTGTATAAGCT Shal_0213 257857 - 256439 - | magnesium transporter TERM 289 257235 - 257219 - G 72 -8.7 -3.73953 | overlap 257221 AGGAGCGGCACGAAA TACGTCG TGA CGACGCA CGCTGCCAATATATT TERM 290 257233 - 257221 - G 70 -9.1 -3.45324 | overlap 257219 GAGCGGCACGAAATA CGTCG TGA CGACG CACGCTGCCAATATA TERM 291 258085 - 258066 - R 100 -10.8 -6.09133 | TATCTGAAAAAAAAA GCCTTCAT TGAG ATGAAGGC TATAGGTGATGTGGT Shal_0214 259316 - 258177 - | hypothetical protein TERM 292 259443 - 259477 + r 71 -9.6 -2.86218 | gap 1, opp_overlap 259441, overlap 259442 259433 AATATTTAATATATT CTGTGGTCAATTAAC CCCAGT GTTAATTGACCA-AG CTTGTATTAATTCTA TERM 293 259493 - 259538 + r 79 -9.8 -3.69364 | opp_overlap 259488 CTTGTATTAATTCTA GGCTGTTTAATGGGGTTGGA TATCAT TCCTTACCCATTAAATAGCC TTGTATGTATTAGGT Shal_0215 260887 - 259529 - | major facilitator transporter TERM 294 259848 - 259831 - G 73 -7.7 -4.15006 | AGAGCCATTGTAAAA TCCCTGG CCCG CCAGAGA AGAAAGCATAAGTAG TERM 295 260649 - 260622 - G 73 -10 -3.42069 | opp_overlap 260626, overlap 260620 GCAATTGCAATAATA TCGATCATAAAC ATGA GTTTACGACCGA AGATATCTGCCACGT TERM 296 261105 - 261132 + r 93 -10 -4.68612 | opp_overlap 261107, overlap 261107 TTTTTAGATGCGACA AAGAGTTGGAAT AATG ATTCCAACTCTG TTTTATAATTTGTTT TERM 297 261130 - 261107 - R 93 -12.6 -3.91144 | opp_overlap 261107 261105 TTTAGATGCGACAAA GAGTTGGAAT AATG ATTCCAACTC TGTTTTATAATTTGT TERM 298 261107 - 261130 + r 93 -12.6 -3.92414 | opp_overlap 261107, overlap 261105 TTTAGATGCGACAAA GAGTTGGAAT AATG ATTCCAACTC TGTTTTATAATTTGT Shal_0216 261449 - 261162 - | putative ferredoxin Shal_0217 262735 - 261446 - | FAD dependent oxidoreductase TERM 299 262498 - 262527 + g 74 -7.3 -4.20025 | opp_overlap 262503, overlap 262496 262503 CAGTATCATCGGTCA GAAAGGTCACT TTCTCTTT AGTGACTTTTC TTTCTATTGGCGCTT TERM 300 262503 - 262522 + g 77 -3.6 -5.10033 | opp_overlap 262503, overlap 262496 262498 TCATCGGTCAGAAAG GTCACT TTCTCTTT AGTGAC TTTTCTTTCTATTGG Shal_0218 263768 - 262827 - | electron transfer flavoprotein alpha subunit Shal_0219 264555 - 263782 - | putative electron transfer flavoprotein FixA TERM 301 264992 - 265017 + H 74 -9.3 -3.45885 | opp_overlap 264995, overlap 264995 AAAATGGTAGTTAAG TAATTCTAATA CGAG TATTAGAATTA TAGTTTTTTACTTCT TERM 302 265394 - 265412 + H 72 -3.2 -5.12785 | opp_overlap 265398, overlap 265396 TATTAAATGGTTCGA CATATTAT TTA ATAATAAG TTTGTTTTTTAGTTA Shal_0220 265540 - 267129 + | L-carnitine/gamma-butyrobetaine antiporter Shal_0221 267141 - 268277 + | crotonobetainyl-CoA dehydrogenase Shal_0222 268532 - 269767 + | crotonobetainyl-CoA:carnitine CoA-transferase TERM 303 270031 - 270051 + G 71 -9.7 -3.14931 | opp_overlap 270031 270033, overlap 270018 TTGGATTGGCTAAGA TAGGCGCGG TAA TCGTGCCTA TTAATAACCAATACC Shal_0223 269778 - 271331 + | putative crotonobetaine/carnitine-CoA ligase TERM 304 271333 - 271320 - f 86 -2.4 -6.04378 | opp_overlap 271320 AAAGTACAAAAAAAA CTTC TTATGT GAAG TTAACTTAATTTAGC Shal_0224 271394 - 272179 + | carnitinyl-CoA dehydratase TERM 305 272202 - 272237 + F 86 -9.2 -4.33907 | opp_overlap 272207, overlap 272207 TGCTATCAATCGAAA TAGAGCCTGATATTTC CCAT GAGATATCGGGTTTTA TTTTAACTGTTTGTC TERM 306 272207 - 272232 + F 90 -9.1 -5.11836 | opp_overlap 272207, overlap 272202 TCAATCGAAATAGAG CCTGATATTTC CCAT GAGATATCGGG TTTTATTTTAACTGT TERM 307 272731 - 272704 - g 71 -10.6 -2.62184 | opp_overlap 272701 272697 TTGCGCGTTATACGA TGGCGGCTTTGG CGGC CCAAAAGCGCCA GCAGATATTGTTGAG Shal_0225 272273 - 273124 + | 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase TERM 308 273134 - 273149 + F 73 -10.4 -2.87132 | opp_overlap 273125, overlap 273125 AAGTAAGCCTTTGTA GGAGGC TTTA GCCTCC TATCTAGACGAGAAA Shal_0226 273204 - 273872 + | carnitine operon protein CaiE Shal_0227 274046 - 274984 + | alpha/beta hydrolase domain-containing protein TERM 309 275052 - 275007 - f 71 -7 -4.09353 | gap 1, opp_overlap 275016 TAGTTAAAAACATAA CTTGGGA-ATGCTCACGAAAC AAACG GTTTCGTGAGCTTGTTCGAAG AATCATCAACTTGTT TERM 310 275016 - 275042 + F 100 -15.3 -3.62046 | opp_overlap 275007 ACATAACTTGGGAAT GCTCACGAAAC AAACG GTTTCGTGAGC TTGTTCGAAGAATCA Shal_0228 275174 - 276064 + | LysR family transcriptional regulator TERM 311 276188 - 276215 + T 93 -10.6 -4.74132 | overlap 276189 276190 TTGTTTAGAGTGATT TAGTGGCCACTA AAGT TAGTGGCCACAG TTTTTAATAACGTAT TERM 312 276189 - 276214 + T 86 -11.9 -3.43756 | overlap 276188 276190 TGTTTAGAGTGATTT AGTGGCCACTA AAGT TAGTGGCCACA GTTTTTAATAACGTA TERM 313 276190 - 276213 + T 95 -15.4 -2.65772 | overlap 276189 276188 GTTTAGAGTGATTTA GTGGCCACTA AAGT TAGTGGCCAC AGTTTTTAATAACGT Shal_0229 276879 - 276244 - | disulphide bond formation protein DsbB Shal_0230 277500 - 276889 - | DSBA oxidoreductase TERM 314 277529 - 277564 + r 77 -8.2 -4.29227 | opp_overlap 277531, overlap 277533 TAAAAATAGGGTTAA CAGCTGTCAGCGCCTT TTAA AAGGCGCTGCCATTGG TTTATTACTGGTTAA TERM 315 277533 - 277560 + r 100 -14.2 -3.70925 | opp_overlap 277531, overlap 277529 AATAGGGTTAACAGC TGTCAGCGCCTT TTAA AAGGCGCTGCCA TTGGTTTATTACTGG Shal_0231 279329 - 277569 - | arylsulfotransferase Shal_0232 280090 - 279344 - | hypothetical protein Shal_0233 280255 - 280920 + | TetR family transcriptional regulator TERM 316 281063 - 281090 + T 100 -18.6 -4.7254 | TTTGGTCACTGTTAA CTGTGGCCACTA AAGT TAGTGGCCACAG TTTTTAATAACGCAT Shal_0234 281754 - 281119 - | disulphide bond formation protein DsbB Shal_0235 282375 - 281764 - | DSBA oxidoreductase TERM 317 282625 - 282635 + H 78 -4 -5.18355 | TAAGTCGGCTGGAGT TTGA TAT TCAA TTTTTAGTTTTTGAA TERM 318 283116 - 283134 + G 71 -7.4 -3.97331 | ACGTAATATTTTAAC TGCAGCTA TTG TTGCTGCA TTATTTCAGTCAGTT Shal_0236 283096 - 284886 + | arylsulfotransferase TERM 319 284924 - 284892 - f 89 -5.6 -5.40072 | gap 1, opp_overlap 284896 284898, overlap 284896 TGGCTTGTAAAAAAA TGAATT-CCGGGCCC GTAT GGGCCCGCTAATTTA GGAGGCTCACAATGA TERM 320 284919 - 284896 - f 75 -8 -4.03885 | opp_overlap 284896 284898, overlap 284892 TTGTAAAAAAATGAA TTCCGGGCCC GTAT GGGCCCGCTA ATTTAGGAGGCTCAC TERM 321 284898 - 284917 + F 77 -10.6 -2.90813 | opp_overlap 284896 284892, overlap 284896 GTAAAAAAATGAATT CCGGGCCC GTAT GGGCCCGC TAATTTAGGAGGCTC Shal_0237 284936 - 285694 + | hypothetical protein TERM 322 286013 - 286030 + G 83 -4.1 -5.31275 | CAATCAGTTATCATC TACGTCG CGTG CGAAGTA TTTTTTCTGATGAGA Shal_0238 285880 - 286851 + | LysR family transcriptional regulator Shal_0239 288165 - 286906 - | osmolarity sensor protein TERM 323 287636 - 287649 + g 74 -3.7 -4.91511 | overlap 287637 TAATCACCTCGTGAT ACGGC AATC GCCGC TTTTTGTAATCGCCT Shal_0240 288986 - 288261 - | osmolarity response regulator Shal_0241 289338 - 289817 + | transcription elongation factor GreB TERM 324 289870 - 289846 - f 81 -7.1 -4.63218 | opp_overlap 289845, overlap 289847 TTTCGGCGAATAAAA TCGCAGCCT CAACAGT AGGCTGCGC GATTTATACCGCGCA TERM 325 289869 - 289847 - f 80 -10.6 -3.3761 | opp_overlap 289845, overlap 289846 TTCGGCGAATAAAAT CGCAGCCT CAACAGT AGGCTGCG CGATTTATACCGCGC TERM 326 290065 - 290080 + G 76 -8.2 -4.183 | TTCATTACTCGATGA CGGCGC AACC GTGCCG TTTATTGCCCGTTAC Shal_0242 289982 - 292339 + | RNA-binding S1 domain-containing protein TERM 327 292351 - 292396 + T 79 -9.2 -3.88583 | opp_overlap 292352 292364, overlap 292352 292364 GTAATCGTTTAAGCG AGACACAAAAAAACCGACAA CTGAGT TTGTCGGTTTTTTTATGCCG TTTCTAAAAGGTTTG TERM 328 292395 - 292352 - T 100 -17.1 -2.53213 | opp_overlap 292351 292352 292364, overlap 292364 TAATCGTTTAAGCGA GACACAAAAAAACCGACAA CTGAGT TTGTCGGTTTTTTTATGCC GTTTCTAAAAGGTTT TERM 329 292352 - 292395 + T 84 -12.7 -2.92668 | opp_overlap 292352 292364, overlap 292351 292364 TAATCGTTTAAGCGA GACACAAAAAAACCGACAA CTGAGT TTGTCGGTTTTTTTATGCC GTTTCTAAAAGGTTT TERM 330 292383 - 292364 - T 100 -7.9 -5.76633 | opp_overlap 292364 292352 292351, overlap 292352 CGAGACACAAAAAAA CCGACAA CTGAGT TTGTCGG TTTTTTTATGCCGTT TERM 331 292364 - 292383 + T 100 -7.9 -5.63504 | opp_overlap 292352 292364, overlap 292352 292351 CGAGACACAAAAAAA CCGACAA CTGAGT TTGTCGG TTTTTTTATGCCGTT Shal_0243 292883 - 292389 - | hypothetical protein TERM 332 292967 - 292941 - R 70 -3.6 -4.87389 | CAGCGTAAAAATAAA GCGCCATGGTCA GAC TCACCTTAACGC TTGGTATCGATTTCT Shal_0244 293752 - 292982 - | bioH protein Shal_0245 293804 - 294568 + | competence protein ComF Shal_0246 297139 - 294599 - | peptidase M14 carboxypeptidase A TERM 333 294796 - 294821 + g 70 -9.1 -3.32769 | gap 1, overlap 294800 GTAGCGGATCTGAAG CGTACTTTGCCG CGA CGGTAAAGT-CG TTGGTCGTTTGAGAA TERM 334 295559 - 295529 - G 74 -8.2 -3.8594 | opp_overlap 295527 295529 AACAGCGATACTAAA GGGCTTGGCGGCAA ACT TTACCATCACGCCC TGTTCTAAGAGCTGT TERM 335 295977 - 295988 + g 73 -2.2 -5.1356 | CTCAATAATAGCCCT GCTT GGTG AGGC TTTTTCTTCATCGCC TERM 336 296936 - 296946 + g 72 -5.4 -4.44046 | GGAAACTCTGGGGTT TTGC TGA GCAA TTTCTTTAAGGTAAG Shal_0247 297350 - 297928 + | putative DNA uptake protein TERM 337 297982 - 297949 - T 72 -4.7 -4.77438 | gap 1, opp_overlap 297952, overlap 297939 297952 AGGTATTATTAAAAA TAACGCGACTCTAG CTCTAGT CTA-AGTCGCGTTT TTTTATGTCAGTTTT TERM 338 297952 - 297979 + T 100 -6.4 -5.72616 | gap 1, opp_overlap 297949 297952 TATTATTAAAAATAA CGCGACTCTAG CTCTAGT CTA-AGTCGCG TTTTTTTATGTCAGT TERM 339 297979 - 297952 - T 77 -6.4 -4.49314 | gap 1, opp_overlap 297952, overlap 297949 TATTATTAAAAATAA CGCGACTCTAG CTCTAGT CTA-AGTCGCG TTTTTTTATGTCAGT Shal_0248 299350 - 298019 - | MATE efflux family protein TERM 340 298102 - 298088 - G 71 -7.1 -4.19177 | ACGGGCTAACATAAA GCAGC TCATG GCTGC CCATAGTGCAAAGTT TERM 341 299725 - 299672 - g 76 -7.6 -4.31 | gap 1, opp_overlap 299682 TTAAAGCAATATAAA TTCCCCTACACCCTTTTTGTATCGG TTGAG CCGATCCTAAAAGAGTAT-GGTGAA ATGATGAGCTGGCAG Shal_0249 299369 - 300415 + | polysaccharide deacetylase TERM 342 300517 - 300478 - T 100 -15.2 -3.41302 | opp_overlap 300483 300487 300490, overlap 300483 CCAAGATCTTAAATA CAAAACTAAGAACCCAGC ATAA GCTGGGTTCTTTGCTTTA AAAGCGATAAACCAC TERM 343 300483 - 300512 + T 95 -15.1 -2.72144 | opp_overlap 300478 300483, overlap 300487 300490 ATCTTAAATACAAAA CTAAGAACCCAGC ATAA GCTGGGTTCTTTG CTTTAAAAGCGATAA TERM 344 300512 - 300483 - T 100 -15.1 -4.79451 | opp_overlap 300483 300487 300490, overlap 300478 ATCTTAAATACAAAA CTAAGAACCCAGC ATAA GCTGGGTTCTTTG CTTTAAAAGCGATAA TERM 345 300487 - 300508 + T 100 -14.5 -4.05788 | opp_overlap 300483 300478, overlap 300483 300490 TAAATACAAAACTAA GAACCCAGC ATAA GCTGGGTTC TTTGCTTTAAAAGCG TERM 346 300490 - 300505 + T 89 -10.4 -4.15396 | opp_overlap 300483 300478, overlap 300487 300483 ATACAAAACTAAGAA CCCAGC ATAA GCTGGG TTCTTTGCTTTAAAA Shal_0250 301259 - 300630 - | electron transport protein SCO1/SenC Shal_0251 302254 - 301349 - | protoheme IX farnesyltransferase TERM 347 301764 - 301802 + g 72 -10.3 -2.91099 | gap 1, opp_overlap 301765, overlap 301763 ACCGCTGTCCAGCCA AGTAGT-GGCGGCATGGC ACCC GCTAAGCCGCCAACTACA ATATTTTGTGGTGTC TERM 348 301801 - 301765 - G 78 -11.6 -3.05384 | gap 1, opp_overlap 301764 301763 CCGCTGTCCAGCCAA GTAGT-GGCGGCATGGC ACCC GCTAAGCCGCCAACTAC AATATTTTGTGGTGT Shal_0252 303251 - 302268 - | cytochrome oxidase assembly Shal_0253 303810 - 303265 - | hypothetical protein Shal_0254 304867 - 303938 - | hypothetical protein TERM 349 304433 - 304420 - G 74 -3.9 -4.9218 | TATCGAGCAGAAAAA TATCT GTCG AGATA GGAGTGACTGCGGCT Shal_0255 305813 - 304932 - | cytochrome c oxidase subunit III TERM 350 305247 - 305262 + g 82 -2.6 -5.61596 | gap 1, overlap 305260 CGCTAGCCAAACCGT TAATGCG CTG CGC-TTA TTTTTTTCTAACCCT Shal_0256 306509 - 305925 - | cytochrome C oxidase assembly protein TERM 351 306159 - 306135 - G 72 -8.5 -3.73042 | overlap 306133 CGTCTTATTAAAATA GGCTGCTCCCA GCC CGGGAGAAACC GATGGAATAGCCTGA Shal_0257 308116 - 306512 - | cytochrome c oxidase subunit I type TERM 352 307172 - 307157 - G 72 -9 -3.55815 | overlap 307147 AAACAGCTCGGCAAA TACCGG CATA CCGGTA GTAAACATGTGGTGT Shal_0258 309712 - 308126 - | cytochrome c oxidase subunit II TERM 353 308231 - 308202 - G 74 -10.7 -3.29144 | opp_overlap 308209 308209 GCATTGCGCTCATAA GTCACCACAGCAG CAAG CTGTTGTGGTGTC AGCACTGCACTAAAT TERM 354 309475 - 309441 - G 74 -3.6 -5.01823 | opp_overlap 309442, overlap 309442 ATAAGAATAATAAAA GGTACTACAGTCCAAA GGA TCTCGACTTTAGTACT TTCATGAAAGTTGGC TERM 355 309491 - 309502 + g 80 -7.2 -4.55798 | TTCATGAAAGTTGGC GGCG ACAG CGCC TTTTGATTTGCGGTG TERM 356 310136 - 310121 - R 93 -9 -5.26918 | opp_overlap 310120 ATAGGCGATAAAAAA GCTCTC GATT GAGAGC CTTAGGTTTTTAGCA Shal_0259 310726 - 310190 - | hypothetical protein Shal_0260 311343 - 310723 - | LexA repressor TERM 357 311662 - 311627 - R 100 -15 -4.86731 | opp_overlap 311636, overlap 311636 CGTGGCTAAACAAAA TATAAAAAATGGTGCC ATAG GGCACCATTTTTTATT GTCATAACTCAAATG TERM 358 311636 - 311653 + r 100 -11.3 -5.58179 | opp_overlap 311627 311636 ACAAAATATAAAAAA TGGTGCC ATAG GGCACCA TTTTTTATTGTCATA TERM 359 311653 - 311636 - R 100 -11.3 -5.65678 | opp_overlap 311636, overlap 311627 ACAAAATATAAAAAA TGGTGCC ATAG GGCACCA TTTTTTATTGTCATA Shal_0261 313604 - 311970 - | FGGY-family pentulose kinase Shal_0262 314572 - 313613 - | monosaccharide-transporting ATPase TERM 360 314200 - 314190 - G 72 -8.2 -3.65832 | overlap 314178 314188 AAAGTGGCCAAAATA GGCG ACA CGCC GATATAGGCAATTAA Shal_0263 315570 - 314572 - | monosaccharide-transporting ATPase Shal_0264 317074 - 315563 - | ABC transporter related TERM 361 316381 - 316365 - G 77 -3.6 -5.14563 | overlap 316367 CCTGTCATTAAAAAA GCCAGC TCATC GCTGTC GACGTCCGCTGCGTT TERM 362 317132 - 317174 + r 76 -10.6 -2.59298 | opp_overlap 317131 317133 317138, overlap 317131 317131 AGCGTGGCTTTAAAC ATTGAAGCGGGTTGCCTATG AAG TATTGGCAACCCGCTATAAG CTGTTATCTAAGGTA TERM 363 317173 - 317133 - R 85 -11.2 -3.34398 | opp_overlap 317132 317131 317131, overlap 317131 317138 GCGTGGCTTTAAACA TTGAAGCGGGTTGCCTAT GAAGT ATTGGCAACCCGCTATAA GCTGTTATCTAAGGT TERM 364 317168 - 317138 - R 100 -15.5 -3.24021 | opp_overlap 317132 317131 317131, overlap 317133 317131 GCTTTAAACATTGAA GCGGGTTGCCTAT GAAGT ATTGGCAACCCGC TATAAGCTGTTATCT Shal_0265 318190 - 317216 - | putative periplasmic binding protein TERM 365 317462 - 317483 + g 75 -6.7 -4.40963 | gap 1, overlap 317465 TGCCTGACTTGGCAT GAT-GATACC AAC GGTATCTATC TTATTTTTGGCGCGT Shal_0266 318924 - 319838 + | hypothetical protein TERM 366 320192 - 320213 + G 73 -10.1 -3.3482 | ATGCTAGTTAACGGT GTCGCTCCT GATA AGGAGCGCC TTGCTTCGAGCATTC Shal_0267 319838 - 321076 + | hypothetical protein TERM 367 321562 - 321550 - g 78 -4.7 -5.02074 | overlap 321551 TCATTGGCCAAAAAA TGGCG ACT CGCCT AAAGACGGCTCTGAA Shal_0268 321189 - 322313 + | hypothetical protein Shal_0269 322347 - 323030 + | ABC transporter related Shal_0270 323040 - 324341 + | hypothetical protein TERM 368 324800 - 324787 - g 78 -6.7 -4.69664 | GAGATGACGGAAAAA CTTGG TTTA CCAAG CCCTTACGAGGAGCT TERM 369 326911 - 326893 - g 72 -6 -4.55128 | overlap 326895 AGTGTCAAATTAAAA GAGTTAGG TTA CCTAACTG ATAATCAAGGGTGTA TERM 370 326909 - 326895 - g 74 -8.6 -3.88396 | overlap 326893 TGTCAAATTAAAAGA GTTAGG TTA CCTAAC TGATAATCAAGGGTG Shal_0271 324601 - 327024 + | glycerol-3-phosphate acyltransferase TERM 371 327066 - 327041 - g 93 -14.7 -3.32647 | opp_overlap 327039 327038, overlap 327058 GGCTAATCATATGAA TGCCGCGGGTC ATGA GACCAGCGGCA AGTCTCTGCTGGGCG Shal_0272 327024 - 328280 + | aromatic amino acid transporter TERM 372 328302 - 328329 + T 90 -10 -4.47551 | opp_overlap 328308, overlap 328308 CCTGCGAGTCAATCA AAAAAAGCCTCT TTAA AGAGGCTTTTTG TTTTCTAGCTTGAGT TERM 373 328308 - 328323 + T 100 -9 -5.54907 | opp_overlap 328308, overlap 328302 AGTCAATCAAAAAAA GCCTCT TTAA AGAGGC TTTTTGTTTTCTAGC TERM 374 328323 - 328308 - T 100 -9 -5.64006 | opp_overlap 328308 328302 AGTCAATCAAAAAAA GCCTCT TTAA AGAGGC TTTTTGTTTTCTAGC Shal_0273 329381 - 328314 - | AraC family transcriptional regulator TERM 375 328789 - 328826 + g 100 -15.8 -3.68569 | opp_overlap 328796, overlap 328792 328796 GTTTGTGGGGCGTTC CAAGAAACAGGGCAGC CAAAGA GCTGTTCTGTTTCTTG TTGTTGGATCGGTGG TERM 376 328792 - 328823 + g 95 -11.7 -3.97307 | opp_overlap 328796, overlap 328789 328796 TGTGGGGCGTTCCAA GAAACAGGGCAGC CAAAGA GCTGTTCTGTTTC TTGTTGTTGGATCGG TERM 377 328796 - 328819 + g 78 -6.7 -4.57882 | opp_overlap 328796, overlap 328792 328789 GGGCGTTCCAAGAAA CAGGGCAGC CAAAGA GCTGTTCTG TTTCTTGTTGTTGGA Shal_0274 329480 - 329827 + | hypothetical protein TERM 378 330456 - 330432 - g 73 -4.3 -4.81851 | gap 1, opp_overlap 330432 330441 ACCCAAATTGAAAAA GCGCAG-ATG GCAGAG CATACCGCGC TGCTTAATATTGAGA Shal_0275 329820 - 331043 + | secretion protein HlyD family protein TERM 379 331058 - 331090 + T 86 -12.1 -3.32385 | opp_overlap 331058 331063, overlap 331063 331081 ATCTAGTCTCACTAA GATAACCCCAAGCCT ATA AAGCTTTGGGTTATC TTAATCTAATCTCTT TERM 380 331090 - 331058 - T 95 -14.3 -3.15663 | opp_overlap 331058 331063 331081, overlap 331063 ATCTAGTCTCACTAA GATAACCCCAAGCCT ATA AAGCTTTGGGTTATC TTAATCTAATCTCTT TERM 381 331085 - 331063 - T 73 -8.4 -3.71284 | opp_overlap 331063 331058 331081, overlap 331058 GTCTCACTAAGATAA CCCCAAGCCT ATA AAGCTTTGGG TTATCTTAATCTAAT Shal_0276 332306 - 331128 - | diguanylate cyclase TERM 382 331996 - 331972 - G 85 -3.6 -5.46629 | opp_overlap 331973, overlap 331973 AATACCTTAAAAAAA TGGATAGAAA ATGGA CTTCTATCCT TGCTGATAGCAAAAA TERM 383 333165 - 333139 - g 73 -10.9 -2.50994 | overlap 333138 TGCAAGTGGAGCAAC TTGGTGGCACA GTGTG TGTGCCTCCAA CAGATATTCCCAACG Shal_0277 332472 - 333254 + | glyoxalase/bleomycin resistance protein/dioxygenase TERM 384 333273 - 333300 + T 88 -11.4 -3.55592 | opp_overlap 333277, overlap 333272 333275 CAACGCCAGAAGCGC AATAGGGTAGCA ATAT TGCTACCCTATC TATTTGTGACATTAT TERM 385 333275 - 333298 + T 95 -14 -3.34646 | opp_overlap 333277, overlap 333273 333272 ACGCCAGAAGCGCAA TAGGGTAGCA ATAT TGCTACCCTA TCTATTTGTGACATT TERM 386 333296 - 333277 - T 83 -12.2 -3.11291 | opp_overlap 333275 333273 333272 GCCAGAAGCGCAATA GGGTAGCA ATAT TGCTACCC TATCTATTTGTGACA Shal_0278 336465 - 333328 - | CzcA family heavy metal efflux protein TERM 387 333539 - 333574 + g 77 -9 -3.885 | gap 1, opp_overlap 333530 333538, overlap 333549 CGAATACGCATAACC GCGCCGTGA-ATAAGCG CTT CGCTTAAGTCGCTGCGC TTGTTATATAGCCCT Shal_0279 338160 - 336478 - | RND family efflux transporter MFP subunit TERM 388 338113 - 338135 + g 100 -5.7 -5.90981 | gap 1, opp_overlap 338112, overlap 338110 CATCACTAAACTCAG TGC-ACAAAC TGTA GTTTGTCGCA TTTTTTTTGATATAA Shal_0280 338799 - 338185 - | hypothetical protein TERM 389 338708 - 338728 + g 95 -11.9 -3.96093 | GCATGCTGGCTTTTA TGGGCACCA TTA TGGTGCTCA TTTGCTGTTGCTGTA Shal_0281 339361 - 338945 - | hypothetical protein Shal_0282 339898 - 339479 - | hypothetical protein Shal_0283 340620 - 340186 - | hypothetical protein Shal_0284 341012 - 341575 + | NapC/NirT cytochrome c domain-containing protein TERM 390 341649 - 341634 - T 76 -7.5 -4.14392 | opp_overlap 341634 GGTTAATCGTGAAAA GCCCC TTAATT GGGGC TTTTTTGTTTTTAAA TERM 391 341634 - 341649 + T 100 -7.5 -5.93252 | opp_overlap 341634 GGTTAATCGTGAAAA GCCCC TTAATT GGGGC TTTTTTGTTTTTAAA TERM 392 341943 - 341920 - T 85 -6.8 -5.02074 | opp_overlap 341920 CTAGTCCCTAAAAAA GCTGCAAT CTGGTGTC ATTGCAGC TTTTTCGTAAGCGAA TERM 393 341920 - 341943 + T 81 -6.8 -4.72272 | opp_overlap 341920 CTAGTCCCTAAAAAA GCTGCAAT CTGGTGTC ATTGCAGC TTTTTCGTAAGCGAA Shal_0285 342293 - 342009 - | hypothetical protein Shal_0286 342914 - 342294 - | putative methyltransferase TERM 394 342887 - 342901 + g 79 -2.8 -5.42259 | opp_overlap 342898 AAATAATCCTAACTT GACC GCTAGAA GGTC TTTTTTTGACCATGG TERM 395 343028 - 343040 + H 70 -5.5 -4.37991 | overlap 343027 343036 GCAGTCGTTAGAATC CGTCA GAA TGGCG TTTTCGCTGTTTTTA Shal_0287 343140 - 344933 + | signal recognition particle-docking protein FtsY Shal_0288 345005 - 345706 + | cell division ATP-binding protein FtsE TERM 396 345755 - 345739 - g 71 -8 -3.95986 | opp_overlap 345738 345747 CTTAATCGAAGCAAA CTGCCA TTTTC TGGCAG AATTGTGATGTTCTT Shal_0289 345706 - 346671 + | hypothetical protein Shal_0290 346897 - 347754 + | RNA polymerase factor sigma-32 TERM 397 347812 - 347795 - T 83 -9.9 -3.81339 | opp_overlap 347795 TAGCGATAATTGAAA CCTGCTT ACCC AAGCAGG TTTTTTTATGTCTGG TERM 398 347795 - 347812 + T 100 -9.9 -5.76633 | opp_overlap 347795 TAGCGATAATTGAAA CCTGCTT ACCC AAGCAGG TTTTTTTATGTCTGG TERM 399 347857 - 347844 - T 77 -8.1 -4.15006 | opp_overlap 347843 ACATTTATGCCAAAA GCCCA TGGA TGGGC AGCTTTTAGCTTTAT TERM 400 347967 - 347981 + T 75 -10 -2.95091 | opp_overlap 347967 TGGCCAAGCCACATA TCAGGC TAC GCCTGA TCTCTAAGTTAGACT TERM 401 347981 - 347967 - T 75 -10 -2.94912 | opp_overlap 347967 TGGCCAAGCCACATA TCAGGC TAC GCCTGA TCTCTAAGTTAGACT TERM 402 348068 - 348038 - T 83 -11.9 -3.12351 | overlap 348043 TTCGCCCACACCCAA GCCAAGGGGGAAA GCGCT TGTCCCCCTTAGC GAACCCTCAGCCCCC Shal_0291 349050 - 348691 - | hypothetical protein Shal_0292 349416 - 351221 + | proprotein convertase P TERM 403 351406 - 351431 + G 71 -7.5 -3.92542 | opp_overlap 351411, overlap 351403 GTGGGCCTGCTATGA TGCAACGTGCC TTTG GGCCCGTTGAA TTATTTGCAGGTGAC Shal_0293 351225 - 351701 + | hypothetical protein TERM 404 351738 - 351765 + T 100 -11.4 -5.27938 | TTTAACGAACGCCAA TGCTCGTATTGT TTTT ACAGTGCGAGCA TTTTTATTTCCCGAT TERM 405 351929 - 351915 - T 72 -10 -2.53263 | CGCATGGGTAATGCA TCAGGC TGC GCCTGA CCAACGTCGTAGGAT TERM 406 352455 - 352441 - T 75 -10 -2.99319 | opp_overlap 352440 352448 AAGTGTCTACACATA TGCCTG CTG CAGGCA ATTAGCTGCATCTGA Shal_0294 354228 - 352696 - | O-succinylbenzoate-CoA ligase TERM 407 352789 - 352805 + g 72 -6.5 -4.2828 | opp_overlap 352781 GTAATAACGCCTTGG TCGCTTG AAA CGGGCGA TTTTGCTCGCTAGAA TERM 408 354119 - 354085 - G 73 -10.1 -3.30124 | gap 1 GCCCATGGCTGATAA CTGCTCGGCCAAAGCG ATAG CACTTTGGCTGAG-AG CGCCGTAGCTAACAC Shal_0295 355412 - 354351 - | O-succinylbenzoate synthase Shal_0296 356282 - 355431 - | alpha/beta hydrolase fold TERM 409 356195 - 356166 - G 77 -10.2 -3.35996 | gap 1, opp_overlap 356170, overlap 356170 GATGCTGATGCAGAA GAAATCATCG-GC TAACT GCTCGATGATTTC ATTCCAATCCTCTTT TERM 410 356243 - 356223 - G 78 -6.2 -4.56597 | gap 1 TTTGCTGCCTAAAAA GCCGTG-TA GCAG TACCACGGC TGGTGATCCTATTTG Shal_0297 357991 - 356282 - | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase TERM 411 358969 - 358981 + G 86 -4.1 -5.49234 | ACCGATGATATCTGT TGGAC AGC GTCTA TTTTTTCTTACCTCT Shal_0298 358237 - 359208 + | LysR family transcriptional regulator TERM 412 359225 - 359254 + T 100 -15.3 -4.25104 | opp_overlap 359232, overlap 359232 TTACATTATTAGCTA TAAAAAAGAGTGC TTAG GCACTCTTTTTTA TTTTAGTCGGCAGGC TERM 413 359247 - 359232 - T 93 -9 -5.28778 | opp_overlap 359225 359232 ATTAGCTATAAAAAA GAGTGC TTAG GCACTC TTTTTTATTTTAGTC TERM 414 359232 - 359247 + T 100 -9 -5.83211 | opp_overlap 359232, overlap 359225 ATTAGCTATAAAAAA GAGTGC TTAG GCACTC TTTTTTATTTTAGTC Shal_0299 360241 - 359276 - | LysR family transcriptional regulator TERM 415 359533 - 359559 + g 77 -8.9 -3.889 | overlap 359524 GCCCGGTTAACCCGG TTAAGTTCATC TCAGT GATGAGCTTAA TTTGCTGTGATTGAC TERM 416 361080 - 361068 - g 88 -7.7 -5.01845 | overlap 361070 GATAAGAATGAAAAA GAGCA AGA TGCTC ATAGCTACCTGCAGG Shal_0300 360798 - 361289 + | hypothetical protein TERM 417 361323 - 361298 - f 100 -16.3 -3.11291 | CGCATAATGTCAATA GGTGTTGCAAC ATCA GTTGCAACACC TCAATCCCCAACCCT Shal_0301 361373 - 361843 + | hypothetical protein Shal_0302 361857 - 362540 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shal_0303 362537 - 363478 + | polysulphide reductase NrfD Shal_0304 363500 - 363790 + | hypothetical protein TERM 418 363922 - 363942 + T 100 -14.1 -4.15998 | CCTCCAAATGGGTTT GCCACCTTA AAC TAAGGTGGC TTCTTTGCTTTAACT Shal_0305 364504 - 364043 - | hypothetical protein TERM 419 364572 - 364549 - R 76 -11 -2.74741 | opp_overlap 364545, overlap 364558 ATTAGAGCCTAATTA TGGCAGAGAG TTCC CTCTCAGCCA GGAGTTGCTAGCCGA Shal_0306 365124 - 364606 - | hypothetical protein Shal_0307 365308 - 366054 + | hypothetical protein TERM 420 367383 - 367393 + G 71 -6.8 -4.11371 | GTTGAGTATCGCCCT TGCC GAT GGCA TTTTGGGGCATATTG Shal_0308 366178 - 367602 + | Sel1 domain-containing protein Shal_0309 367748 - 369025 + | hypothetical protein Shal_0310 369382 - 369050 - | hypothetical protein TERM 421 369282 - 369266 - G 75 -2.9 -5.20606 | AAATAGTAATAAAAA CGGCAGT GCG ACTAGCG CTAGCGTCATAAAAG Shal_0311 370508 - 369540 - | LysR family transcriptional regulator TERM 422 370366 - 370346 - G 72 -5.3 -4.63218 | opp_overlap 370348 CGGTGCGCAAGAAAA GAGGATCCC CTA GGGTTTCTC TTAAACGGTTTAAAC Shal_0312 370609 - 371811 + | Bcr/CflA subfamily drug resistance transporter TERM 423 371844 - 371872 + F 82 -3.8 -5.44119 | opp_overlap 371859 ATTGATTCACCCTAA GCCTGGATAGAT TAACC ACCTATGCGGGC TTTTTTTACACTAAA Shal_0313 371981 - 372574 + | DTW domain-containing protein Shal_0314 374976 - 372829 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 424 375540 - 375520 - g 72 -5.3 -4.67904 | GAGCAACTTCAAAAA GCCCGTGAC GCA GCCAAGAGC AGGGAGGAGCGTGAA Shal_0315 375346 - 375738 + | hypothetical protein Shal_0316 375754 - 376389 + | methyltransferase type 11 TERM 425 376554 - 376575 + G 72 -5.1 -4.66609 | gap 1, overlap 376555 GAGCGTTGCGCTGGC AGCGA-CGAG TGA CTCGATCGCA TTTTTAAATAGAGTC Shal_0317 376477 - 377448 + | hypothetical protein Shal_0318 378190 - 377522 - | type IV pilus assembly PilZ TERM 426 377626 - 377639 + g 76 -2.3 -5.32882 | GCCTTGAAGAGGGAT CGAGC TCTT GCTGG TTTTTTATGGTAATA Shal_0319 378480 - 379811 + | peptidase M16 domain-containing protein Shal_0320 379808 - 381274 + | peptidase M16 domain-containing protein TERM 427 381333 - 381317 - T 100 -13.7 -3.81089 | opp_overlap 381317 TATACACAGCAACAA GCCGCGA CTA TCGCGGC TTTTTTATGTCTGGA TERM 428 381317 - 381333 + T 100 -13.7 -5.4251 | opp_overlap 381317 TATACACAGCAACAA GCCGCGA CTA TCGCGGC TTTTTTATGTCTGGA Shal_0321 381872 - 381411 - | RNA methyltransferase Shal_0322 382088 - 383020 + | LysR family transcriptional regulator TERM 429 383122 - 383108 - f 72 -10 -2.53581 | CACATTGGTAATGCA TCAGGC TTC GCCTGA CAACGTCGTGGGATG Shal_0323 383624 - 384397 + | hypothetical protein Shal_0324 384811 - 385155 + | hypothetical protein TERM 430 386170 - 386154 - f 100 -12.3 -5.83211 | opp_overlap 386154 CAGTAAAATAAAAAA GCATCCC AGC GGGATGC TTTTTTTTGTTTAAA TERM 431 386154 - 386170 + F 100 -12.3 -6.23545 | opp_overlap 386154 CAGTAAAATAAAAAA GCATCCC AGC GGGATGC TTTTTTTTGTTTAAA TERM 432 386552 - 386564 + F 72 -3.3 -5.15969 | ATTTGCCAATCAATC TGCGG CTA CCACA TTTTTTGCCTTAAGG Shal_0325 386672 - 386920 + | hypothetical protein Shal_0326 388234 - 387341 - | radical SAM domain-containing protein TERM 433 387838 - 387866 + g 77 -10.9 -3.16683 | opp_overlap 387824 ACGGCAGTTGCAAGG TGGCTTCACCGCC GCT GACGGTGATGCCG TTGATAAAGTGCACT Shal_0327 389814 - 388291 - | hypothetical protein TERM 434 390028 - 389995 - R 74 -8.9 -3.55444 | overlap 389996 TCGCTAGGGGGGAAA TTGCAGACTAGCGAT GGAA ATAGCTAGCCTGCAC TGGCACTAGAGTTAT TERM 435 390027 - 389996 - R 83 -12.4 -2.73124 | overlap 389995 CGCTAGGGGGGAAAT TGCAGACTAGCGAT GGAA ATAGCTAGCCTGCA CTGGCACTAGAGTTA Shal_0328 391588 - 390068 - | aldehyde dehydrogenase Shal_0329 391885 - 392865 + | quinone oxidoreductase putative YhdH/YhfP Shal_0330 394207 - 393275 - | LysR family transcriptional regulator TERM 436 395050 - 395062 + G 73 -10.5 -3.01712 | TTGCCGATCAGCTAG CCGCG GGT CGCGG TATTGCCGACGAAGC Shal_0331 394704 - 396224 + | flavocytochrome c TERM 437 396592 - 396571 - g 70 -10.3 -2.51464 | overlap 396570 CCACTATGTAGTAAC TGTCATACT TTTA AGTATGACA AGCATAAAGAGTAAA Shal_0332 396253 - 396606 + | tetraheme cytochrome c TERM 438 396696 - 396681 - f 85 -9 -4.19238 | opp_overlap 396681 CCTGCAATTTTAAAA GACCAC ATTT GTGGTC TTTTTTTTGTACAAA TERM 439 396681 - 396696 + F 100 -9 -5.93809 | opp_overlap 396681 CCTGCAATTTTAAAA GACCAC ATTT GTGGTC TTTTTTTTGTACAAA Shal_0333 396869 - 398113 + | hypothetical protein TERM 440 398205 - 398195 - f 70 -2.6 -5.16841 | GCATATTAATAAAAA TATA AAT TATA AAAATGGGGTTAGAA Shal_0334 398330 - 399439 + | hypothetical protein TERM 441 399510 - 399490 - T 91 -9.7 -4.65933 | opp_overlap 399491, overlap 399491 TATTGCTAAAAGAAA TGCCAACCT AAA AGGTTGGCT TTTTTAGTTTCAATC TERM 442 399491 - 399509 + T 100 -13.2 -5.38497 | opp_overlap 399490 399491 ATTGCTAAAAGAAAT GCCAACCT AAA AGGTTGGC TTTTTTAGTTTCAAT TERM 443 399509 - 399491 - T 93 -13.2 -3.38836 | opp_overlap 399491, overlap 399490 ATTGCTAAAAGAAAT GCCAACCT AAA AGGTTGGC TTTTTTAGTTTCAAT Shal_0335 400465 - 399578 - | LysR family transcriptional regulator Shal_0336 400587 - 401234 + | regulatory protein TetR TERM 444 401216 - 401231 + T 81 -11.8 -2.76442 | overlap 401214 401203 401201 TGCCAGACTCGAACC CGCGGC AAAC GCCGCG TAGTTGAGTGATGGT Shal_0337 402619 - 401249 - | histidine kinase Shal_0338 403303 - 402620 - | two component transcriptional regulator TERM 445 402978 - 402961 - G 70 -9.1 -3.35679 | GTGTGCGACGGATAA TGGCACG AATA CGCGCCA CCAGTTCTCTATCAT Shal_0339 403532 - 404014 + | protein of unknown function Spy-related TERM 446 404034 - 404072 + F 100 -12.6 -4.27316 | opp_overlap 404015 404042 CTTTCGCTTTGAAGG CTAATCGACCCAATAGCT TTT ATCTATTGGGTCAATTGG TTTTAACTTGAAGGA TERM 447 404192 - 404236 + G 70 -9.4 -3.39505 | gap 2, overlap 404199 CCCAATATGACTTCT GGGTT-AAGCTGGC-CAGCCGC GCA GCCGTTGCGACAGCTTTAACCC TTATCACTATCAAGT Shal_0340 404164 - 405033 + | cation diffusion facilitator family transporter TERM 448 405074 - 405056 - T 93 -8.9 -5.32944 | opp_overlap 405056 CTTATAATCAAAAAA GGAGATC CTGTT GATCTCC TTTTTTGTTTTCAGC TERM 449 405056 - 405074 + T 100 -8.9 -5.79595 | opp_overlap 405056 CTTATAATCAAAAAA GGAGATC CTGTT GATCTCC TTTTTTGTTTTCAGC Shal_0341 406557 - 405148 - | nitrogen metabolism transcriptional regulator, NtrC, Fis family TERM 450 406181 - 406191 + g 74 -6.8 -4.19817 | TCAACGGTGATACTC GAGC TCT GCTC TTTTGCATGGGTGAG Shal_0342 407615 - 406575 - | signal transduction histidine kinase, nitrogen specific, NtrB TERM 451 406682 - 406697 + g 70 -9 -3.45849 | GGGCGATTGATAGTC CAAGGC CTGA GCCTTG TTCTCGTCCTGTCAC Shal_0343 408313 - 407765 - | hypothetical protein TERM 452 408667 - 408677 + G 72 -5.4 -4.42238 | GTTAGCGATATGCAT GTTG CTC CAAC TTTTGATTGCGCTAA Shal_0344 408544 - 409194 + | hypothetical protein TERM 453 409244 - 409271 + T 73 -7.8 -3.88731 | opp_overlap 409250, overlap 409237 409231 409250 CGCGATTAGCAAACA AAAAAAGCAGCT TGTC GGCTGCTTTTTG TTTGCTGTCGTCTTG TERM 454 409265 - 409250 - T 100 -6.1 -5.99154 | opp_overlap 409244 409237 409231 409250 TAGCAAACAAAAAAA GCAGC TTGTCG GCTGC TTTTTGTTTGCTGTC TERM 455 409250 - 409265 + T 93 -6.8 -5.35815 | opp_overlap 409250, overlap 409244 409237 409231 TAGCAAACAAAAAAA GCAGCT TGTC GGCTGC TTTTTGTTTGCTGTC Shal_0345 410058 - 409381 - | ThiJ/PfpI domain-containing protein Shal_0346 411327 - 410170 - | iron-containing alcohol dehydrogenase TERM 456 411411 - 411435 + r 77 -10 -3.34522 | CTAGTGGCTTATTGC GCTCGCTAAC ATTGA GTTAGCGTGC TTGGTTCAACCCTGT Shal_0347 411926 - 411474 - | AsnC family transcriptional regulator TERM 457 412273 - 412253 - R 100 -14.1 -5.49569 | TAGCAAGATAAAAAA CAGGCCTTA ATT TAAGGCCTG AGATATCACTTTTAA Shal_0348 412595 - 412290 - | hypothetical protein TERM 458 412570 - 412583 + g 89 -4.5 -5.67967 | CCTGCGCTTAGCAGT GCGAC TCGA GTTGC TTTTTTTCTCATAGT Shal_0349 412844 - 413854 + | BNR repeat-containing glycosyl hydrolase Shal_0350 414236 - 413922 - | XRE family transcriptional regulator Shal_0351 414706 - 414278 - | hypothetical protein TERM 459 414798 - 414840 + r 89 -12.2 -3.51825 | opp_overlap 414805, overlap 414802 414805 TGAATGTGACAGGCG TAAAAAAGGCATATGACACT TAA AGTGTCATATGCCTAATTGA TTGTAATTAAGATGC TERM 460 414802 - 414836 + r 95 -13 -3.5002 | opp_overlap 414805, overlap 414798 414805 TGTGACAGGCGTAAA AAAGGCATATGACACT TAA AGTGTCATATGCCTAA TTGATTGTAATTAAG TERM 461 414833 - 414805 - R 100 -19.1 -5.04385 | opp_overlap 414805 414802 414798 GACAGGCGTAAAAAA GGCATATGACACT TAA AGTGTCATATGCC TAATTGATTGTAATT TERM 462 414805 - 414833 + r 100 -19.1 -2.88389 | opp_overlap 414805, overlap 414802 414798 GACAGGCGTAAAAAA GGCATATGACACT TAA AGTGTCATATGCC TAATTGATTGTAATT Shal_0352 416164 - 414929 - | sodium:dicarboxylate symporter TERM 463 415911 - 415888 - G 72 -8.2 -3.8062 | TAATCGCCATAACAA TAGAGACCAT GAAA ATGGTCACTA GGATCACACCGAGTT TERM 464 416295 - 416272 - R 100 -11.8 -6.15259 | CAAGGTAAAAAAAAA GCCCCAAACA TTGC TGTTTAGGGC TGTAAGGCTAACCAC Shal_0353 417749 - 416340 - | glutamine synthetase TERM 465 417770 - 417787 + H 80 -6.3 -4.83032 | AGTCTCCGAGTAGGG TAAAGGG TCGT CCCTTTG TTTTATCTTTAATAT Shal_0354 418452 - 420263 + | GTP-binding protein TypA TERM 466 420308 - 420335 + F 100 -16.4 -5.27206 | opp_overlap 420308 GTTAAGTATTAAAAA GGCCCTGAGCAT GCAA ATGTTCAGGGCC TTTTTGTTGTCTGTA TERM 467 420335 - 420308 - f 100 -14.2 -4.81083 | opp_overlap 420308 GTTAAGTATTAAAAA GGCCCTGAGCAT GCAA ATGTTCAGGGCC TTTTTGTTGTCTGTA TERM 468 420740 - 420752 + F 74 -4.1 -5.13521 | CTATTGGAGAAAGTT GTGGA ATT TCTAC TTTTTTGCCTAATTT TERM 469 421071 - 421083 + G 78 -4.8 -4.92783 | opp_overlap 421049, overlap 421049 GCAATGGTGCTGGTA TCGC TAATT GCGA TTTTTATCATGCGTT Shal_0355 420918 - 422369 + | disulphide bond formation protein DsbB TERM 470 422363 - 422380 + F 77 -8.5 -3.9392 | CTTCTACCAAGTTCA GCAGTAA TTAT TTACTGC TTATTTAGAGTGAGA TERM 471 422423 - 422401 - f 79 -10.6 -3.14026 | opp_overlap 422401 TAGAGTGAGAGTGAA GCCCTTAATC TAT GGTTAAGGGC TTTTTGCATTGTTTC TERM 472 422401 - 422423 + F 100 -12.8 -4.8384 | opp_overlap 422401 TAGAGTGAGAGTGAA GCCCTTAATC TAT GGTTAAGGGC TTTTTGCATTGTTTC Shal_0356 422650 - 423513 + | pyridoxal kinase TERM 473 423583 - 423554 - T 75 -10 -3.17901 | opp_overlap 423555, overlap 423557 AGAGGCGGAATTTAA TGAGCCTACTCC ATTCAG GGAGCAGGCTCT TTTCTTAGCCATTAC TERM 474 423555 - 423582 + T 93 -11.3 -4.65747 | opp_overlap 423554 423557 GAGGCGGAATTTAAT GAGCCTACTCC ATTCAG GGAGCAGGCTC TTTTCTTAGCCATTA TERM 475 423580 - 423557 - T 73 -10.3 -2.78712 | opp_overlap 423555, overlap 423554 GGCGGAATTTAATGA GCCTACTCC ATTCAG GGAGCAGGC TCTTTTCTTAGCCAT Shal_0357 425119 - 423905 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 476 425254 - 425289 + r 86 -10.6 -3.86776 | opp_overlap 425254 CGCACTAGCTCACAA GTTTGGTTCCTAAG AGTTCATA CCTAGGAACCAAAC TTTAGTCATTACTTA TERM 477 425289 - 425254 - R 87 -12.8 -3.34043 | opp_overlap 425254 CGCACTAGCTCACAA GTTTGGTTCCTAAG AGTTCATA CCTAGGAACCAAAC TTTAGTCATTACTTA Shal_0358 425949 - 425302 - | hypothetical protein Shal_0359 426205 - 425981 - | hypothetical protein TERM 478 426172 - 426158 - G 77 -3.5 -5.10461 | gap 1 TCCAGCGAAGAAAAA GCTCGC GATT GCG-GC AATAACATTGCCTGA Shal_0360 426342 - 427322 + | ribonuclease BN Shal_0361 427328 - 428260 + | prolyl aminopeptidase TERM 479 428368 - 428357 - g 85 -3.6 -5.47159 | CTTCAACAGAAAAAA CCGC AGAG GCAG AAGTCGCAGTCAAAG Shal_0362 428281 - 428862 + | hypothetical protein TERM 480 428980 - 428924 - f 77 -10 -3.30651 | gap 1, overlap 428922 428926 428930 428931 GCTGAGACGATAATA GACGAACGGCC-TACGGCCTTACGGCC TTAC GGCCTTACGGCCTTACGGCCTTACGGC CTTACGGCCTTACGG TERM 481 428978 - 428926 - f 82 -11.2 -3.2178 | gap 1, overlap 428922 428924 428930 428931 TGAGACGATAATAGA CGAACGGCC-TACGGCCTTACGGCC TTAC GGCCTTACGGCCTTACGGCCTTACG GCCTTACGGCCTTAC TERM 482 428974 - 428930 - f 72 -9.2 -3.40593 | gap 1, overlap 428922 428926 428924 428931 ACGATAATAGACGAA CGGCC-TACGGCCTTACGGCC TTAC GGCCTTACGGCCTTACGGCCT TACGGCCTTACGGCC TERM 483 428989 - 428931 - f 100 -16.7 -2.63633 | gap 1, overlap 428922 428930 428926 428924 CGATAATAGACGAAC GGCC-TACGGCCTTACGGCCTTACGGCC TTAC GGCCTTACGGCCTTACGGCCTTACGGCC TTACGGCCTTACGGC TERM 484 429393 - 429411 + F 83 -6 -5.01042 | opp_overlap 429393 GTGCCTTGTTTTAAA GCGAAG CGTTCGT CTTCGC TTTTTCATTTAAGTT Shal_0363 429455 - 429892 + | D-tyrosyl-tRNA(Tyr) deacylase Shal_0365 430742 - 430407 - | rhodanese domain-containing protein TERM 485 430950 - 430931 - R 90 -7.1 -5.28778 | opp_overlap 430931 ATCAGCTATAAAAAA GACCTCC ATTTTA GGAGGCC TTAGTTTATTTTTTA Shal_0366 432556 - 431309 - | 3-oxoacyl-(acyl carrier protein) synthase II Shal_0367 433278 - 432553 - | 3-ketoacyl-(acyl-carrier-protein) reductase Shal_0368 433933 - 433388 - | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ Shal_0369 435200 - 433902 - | 3-oxoacyl-(acyl carrier protein) synthase I Shal_0370 435885 - 435223 - | hypothetical protein Shal_0371 437180 - 435873 - | tryptophan halogenase TERM 486 435965 - 435985 + g 71 -6.9 -4.13945 | opp_overlap 435965 435969, overlap 435969 435980 CATATCCAGCAAGAA TTGAGCAGA TCA TCTGCTTGA TTTTCGGATCGGGCT Shal_0372 439602 - 437167 - | hypothetical protein Shal_0373 440375 - 439608 - | outer membrane lipoprotein carrier protein LolA TERM 487 440033 - 440049 + g 75 -9.5 -3.60296 | CTTGGCTATCTATCT GGATAAG CTG CTTATCC TTTAAGATCAGCGTG TERM 488 440099 - 440074 - G 72 -4.7 -4.56775 | AGCGTGCTGGAAAAA GGCATATTCTG CTGC CAAATTACGCC GAGATCTTTTGCAAA Shal_0374 440818 - 440372 - | 4-hydroxybenzoyl-CoA thioesterase Shal_0375 442642 - 441080 - | histidine ammonia-lyase Shal_0376 444369 - 442639 - | glycosyl transferase family protein Shal_0377 444755 - 444369 - | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ Shal_0378 446131 - 444752 - | hypothetical protein Shal_0379 446676 - 446128 - | hypothetical protein Shal_0380 446924 - 446676 - | acyl carrier protein Shal_0381 447188 - 446934 - | acyl carrier protein, putative Shal_0382 448003 - 447185 - | phospholipid/glycerol acyltransferase Shal_0383 448733 - 447996 - | hypothetical protein TERM 489 448395 - 448385 - G 74 -6.8 -4.35581 | opp_overlap 448384 448385 TTAAAATACTGAAAA TGCC GCT GGCA GTATTGTGCACCGAC TERM 490 448866 - 448880 + r 73 -8.6 -3.65529 | opp_overlap 448865, overlap 448850 TACATCATAAATGAT GAGCTT AAT AAGCTC TTTCGATACAGATGT Shal_0384 449858 - 448992 - | hypothetical protein Shal_0385 452092 - 450002 - | ATP-dependent DNA helicase RecG TERM 491 450106 - 450082 - G 71 -10.1 -3.28712 | opp_overlap 450071 GTGCCTGCTGCATAA CATGTGCAG CCAGTTT CTGCACATG AGGAATAAGGGCTTC TERM 492 452171 - 452203 + r 77 -9.9 -3.51976 | opp_overlap 452173, overlap 452167 452173 GTATATAAAACAAAA AAGGCCTAACGTATA ATT TGCACGTTAGGCCTA TTCATTTAAGCAATT TERM 493 452173 - 452201 + r 87 -12.5 -3.33151 | opp_overlap 452173, overlap 452171 452167 ATATAAAACAAAAAA GGCCTAACGTATA ATT TGCACGTTAGGCC TATTCATTTAAGCAA TERM 494 452201 - 452173 - R 100 -12.5 -5.8901 | opp_overlap 452173 452171 452167 ATATAAAACAAAAAA GGCCTAACGTATA ATT TGCACGTTAGGCC TATTCATTTAAGCAA Shal_0386 453161 - 452235 - | CaCA family Na(+)/Ca(+) antiporter TERM 495 452680 - 452664 - G 72 -5.9 -4.52415 | ACCGATAACAATAAA CAATACT GAT AGCATTG GGTTTTGCTGAGCAT TERM 496 453149 - 453133 - G 79 -2.9 -5.32944 | overlap 453134 453135 GTCAGAATTAAAAAA CCGCCGA GTA TCGACAA TAAAATAAACATGAT TERM 497 453313 - 453292 - R 100 -10.9 -5.63517 | opp_overlap 453292 GCTCTAAATAAAAAA CGGCACACT GAAA AGTGTACCG TTTATGGGGGAAATC TERM 498 453292 - 453313 + r 77 -8.7 -3.86015 | opp_overlap 453292 GCTCTAAATAAAAAA CGGCACACT GAAA AGTGTACCG TTTATGGGGGAAATC Shal_0387 454995 - 453340 - | AMP-dependent synthetase and ligase TERM 499 455238 - 455219 - R 100 -10.8 -5.76633 | opp_overlap 455219 TTAGAGATAAAAAAA TACCAGCA GGGC TGCTGGTA TTTTTTGATGGGCTT TERM 500 455219 - 455238 + r 93 -10.8 -5.16237 | opp_overlap 455219 TTAGAGATAAAAAAA TACCAGCA GGGC TGCTGGTA TTTTTTGATGGGCTT Shal_0388 455945 - 455259 - | tRNA guanosine-2'-O-methyltransferase TERM 501 455844 - 455858 + g 74 -8.6 -3.87373 | overlap 455813 GGTACGCAGCACGGC GGCAAT GTT ATTGCC TTTATGCACGGTATC TERM 502 455999 - 455984 - R 86 -8.2 -4.89477 | opp_overlap 455983 455984 GTTTTAACAATAAAA GGGCGC CGTA GCACCC ATTTGGTAGAGGAGT Shal_0389 456404 - 456021 - | putative endoribonuclease L-PSP Shal_0390 458540 - 456435 - | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase TERM 503 458364 - 458345 - G 71 -10 -3.29263 | AGAGTGCGGCCATAA GCGTCTCA TGAT CGAGACGC ATATCGGCCAGGATG Shal_0391 458835 - 458554 - | DNA-directed RNA polymerase subunit omega Shal_0392 459556 - 458897 - | guanylate kinase Shal_0393 459858 - 460988 + | hypothetical protein Shal_0394 461132 - 462037 + | hypothetical protein TERM 504 462422 - 462447 + G 72 -8.9 -3.49886 | GCTATTTGTCGATCT TGGCGAGCAAG GGTT CTGGCGCGCCA TTAATTATCTACCGT Shal_0395 462129 - 463199 + | aminoglycoside phosphotransferase TERM 505 463207 - 463221 + F 86 -7.8 -4.93296 | opp_overlap 463207 463201 AGTCTTAAATAATGA GGGGAG TTG TTCCCC TTTTTATCCTCATCA TERM 506 463437 - 463425 - f 74 -9.1 -3.53811 | opp_overlap 463433 TGCAGTGCTTTGAAA CCCAC CCT GTGGG AAGCGCTCAAGCATT Shal_0396 463660 - 464946 + | acetyl-CoA hydrolase/transferase TERM 507 465057 - 465100 + T 88 -9.1 -4.49556 | gap 2, opp_overlap 465057 GGTAATCGTTAGGAA TAAGCCGGGT-AGC-TTGACC AATG GGTTGATGCTGACTCGGCTTA TTTATTTGCTGCACC Shal_0397 465732 - 465034 - | hypothetical protein Shal_0398 465927 - 467195 + | amidohydrolase TERM 508 467254 - 467282 + F 100 -15.4 -4.39166 | opp_overlap 467254, overlap 467277 TTAACGGCCTAATAA CGGCGCTTAGTT CACAC AACTAGGCGCCG TTTTGCTATCTGCGA TERM 509 467282 - 467254 - f 95 -13.2 -3.63569 | opp_overlap 467254 467277 TTAACGGCCTAATAA CGGCGCTTAGTT CACAC AACTAGGCGCCG TTTTGCTATCTGCGA TERM 510 467626 - 467640 + G 73 -2.1 -5.1287 | gap 1 GCTGGTTTAGTCGCG TCG-GG TGGT CCACGA TTTTTTGGCTATGCC Shal_0399 467410 - 468852 + | pyridoxal-dependent decarboxylase Shal_0400 468890 - 469324 + | hypothetical protein TERM 511 469363 - 469392 + T 100 -18.7 -4.90013 | opp_overlap 469363 CGTCATCATTGAAAA CCGGCCTGTTACT AACG AGTAGCAGGCCGG TTTTTGGTTAAGTTA TERM 512 469392 - 469363 - T 100 -16.5 -4.21194 | opp_overlap 469363 CGTCATCATTGAAAA CCGGCCTGTTACT AACG AGTAGCAGGCCGG TTTTTGGTTAAGTTA TERM 513 469477 - 469514 + T 72 -3.4 -5.09895 | opp_overlap 469477 TTATCGTTAATAAAG GCTAACGGTTACATGC TCATAT GCATGTTAGCATTGGC TTTTTTGCCTAAATA Shal_0401 470939 - 469485 - | permease TERM 514 469964 - 469952 - G 72 -9.1 -3.51934 | overlap 469950 CGTTGCTGATAAATA GGCTG CGC CAGCC ATCGAGTGGCACAAT TERM 515 470672 - 470659 - G 81 -3.8 -5.37593 | opp_overlap 470659 CTGGAAACTAAAAAA GCCA TCGCAT TGGC TACTGTTGATTTTTT Shal_0402 471766 - 471098 - | ERCC4 domain-containing protein Shal_0403 472743 - 472030 - | cytoplasmic chaperone TorD family protein Shal_0404 475192 - 472769 - | anaerobic dimethyl sulfoxide reductase subunit A TERM 516 473264 - 473283 + g 78 -5.8 -4.77157 | opp_overlap 473263 473264 CTTATGGCTATAAAT CTGAATTT TTCC AGATTCAG TTTTTAATGGATTAG Shal_0405 476062 - 475223 - | putative anaerobic dimethyl sulfoxide reductase, subunit C Shal_0406 476688 - 476065 - | dimethylsulfoxide reductase chain B Shal_0407 477514 - 476840 - | two component LuxR family transcriptional regulator Shal_0408 479276 - 477495 - | histidine kinase TERM 517 479503 - 479527 + r 100 -13 -4.08557 | opp_overlap 479503 TTCAGCAATAAAAAA TGCCAGTAAG CTTAA CTTACTGGCA TTGTTGTTTAGCGGG TERM 518 479527 - 479503 - R 100 -13.7 -5.5112 | opp_overlap 479503 TTCAGCAATAAAAAA TGCCAGTAAGC TTA ACTTACTGGCA TTGTTGTTTAGCGGG Shal_0409 480678 - 479557 - | mandelate racemase/muconate lactonizing protein Shal_0410 482274 - 480682 - | putative transporter TERM 519 481440 - 481417 - G 70 -5.2 -4.3851 | opp_overlap 481417 CACAGCAAACACAAA GCACATACCA CAAG CGGCATGAGC GATTTTTTGCAGACC TERM 520 482765 - 482784 + H 75 -5.8 -4.69664 | gap 1, opp_overlap 482761, overlap 482752 482761 482766 AACTGACTATATTGT C-GGATTGT CCT ACAATCCTG TTTTTAACTCGTATG TERM 521 482766 - 482782 + H 83 -9.5 -3.95883 | opp_overlap 482761, overlap 482752 482761 482765 ACTGACTATATTGTC GGATTGT CCT ACAATCC TGTTTTTAACTCGTA Shal_0411 482797 - 483132 + | putative carbohydrate hydrolase (N-terminus) Shal_0412 483129 - 484310 + | D-galactarate dehydratase/Altronate hydrolase domain-containing protein TERM 522 484348 - 484377 + F 84 -10 -3.79113 | opp_overlap 484343 484347 CATTAATAATGCAAT GCCCTTGCTACA CATAGT TGTAGCCGGGGC TTATTATCGCAGGAT Shal_0413 484396 - 485298 + | LysR family transcriptional regulator Shal_0414 485367 - 486035 + | GntR family transcriptional regulator TERM 523 486095 - 486118 + T 100 -15.4 -3.03028 | TAGTCGTTTTTAGTC GCACCACGTT TAGC AACGTGGTGC TATATGTAGGTATTT Shal_0415 487418 - 486132 - | ammonium transporter TERM 524 487348 - 487335 - G 72 -5.9 -4.386 | TAATCCCCCATAAAA CAGGG CAAG CCCCG GAGTCATTAACAGCA TERM 525 487678 - 487645 - R 100 -13.3 -4.65916 | gap 1, opp_overlap 487640 487645 TTGAGGTTAACAAAA GGCCCATG-TGACATT CTA AGTGTCAGCATGGGCC TGTGCTTTAAGTCAT TERM 526 487645 - 487678 + r 100 -15.5 -3.02591 | gap 1, opp_overlap 487645, overlap 487640 TTGAGGTTAACAAAA GGCCCATG-TGACATT CTA AGTGTCAGCATGGGCC TGTGCTTTAAGTCAT TERM 527 487750 - 487732 - R 79 -8.8 -4.10188 | GAGACTCATAAACAA GCCGGCAA TCG TTGCCGCC ATAAGGTTTGATAGT Shal_0416 488979 - 487711 - | nucleoside transporter TERM 528 488827 - 488817 - G 81 -8.2 -4.50988 | CCATATTAAAAATAA CGGC TTG GCCG AACGATGAATAGATG Shal_0417 490070 - 489231 - | purine phosphorylase family 1 TERM 529 490507 - 490523 + r 78 -10.9 -2.98823 | opp_overlap 490499 490522 GGGAATAGGCTGGTG GCTTTGC TTA GCAAAGC TATCTGTCAGCCAAC Shal_0418 493748 - 490530 - | type III restriction protein res subunit TERM 530 493847 - 493869 + r 76 -9.1 -3.62068 | opp_overlap 493849, overlap 493845 493849 TTTTCAGGCAACAAA AAGCCCAGC ATTTA GCTGGGCTC TCTTATATTTTATTG TERM 531 493867 - 493849 - R 100 -11.7 -5.10461 | opp_overlap 493847 493845 493849 TTCAGGCAACAAAAA GCCCAGC ATTTA GCTGGGC TCTCTTATATTTTAT TERM 532 493849 - 493867 + r 86 -11.7 -3.35613 | opp_overlap 493849, overlap 493847 493845 TTCAGGCAACAAAAA GCCCAGC ATTTA GCTGGGC TCTCTTATATTTTAT Shal_0419 495401 - 494094 - | HipA domain-containing protein Shal_0420 495636 - 495388 - | XRE family transcriptional regulator TERM 533 496033 - 496067 + r 73 -5.7 -4.5394 | opp_overlap 496028 496041, overlap 496041 TGCTCCAAAAGGGCA AACAAAAAGCCCAGC ATTTA GCTGGGCTTTGTATC TTTTACTATTTGTCT TERM 534 496059 - 496041 - R 100 -11.7 -5.29846 | opp_overlap 496033 496041, overlap 496028 AAGGGCAAACAAAAA GCCCAGC ATTTA GCTGGGC TTTGTATCTTTTACT TERM 535 496041 - 496059 + r 95 -11.7 -4.34859 | opp_overlap 496028 496041, overlap 496033 AAGGGCAAACAAAAA GCCCAGC ATTTA GCTGGGC TTTGTATCTTTTACT Shal_0421 496976 - 496113 - | hypothetical protein Shal_0422 497250 - 497963 + | ribonuclease PH TERM 536 497982 - 497997 + F 86 -8.2 -4.87665 | TCGTTTTTGTTATTA GGGCCC TACG GGGTCC TTTTTGTAAGTAAAA Shal_0423 498083 - 498724 + | orotate phosphoribosyltransferase TERM 537 498916 - 498964 + T 85 -9.2 -4.22407 | gap 2, opp_overlap 498931, overlap 498931 TCTTTGATTGCTTCG CCGAAAACGAAAAAACGCTGCGTT TAT GACGGAGCGT-TTTT-GTTTTTGG TTTCTGCTTTTCCTA TERM 538 498951 - 498931 - T 93 -6.8 -5.46698 | opp_overlap 498916 498931 CCGAAAACGAAAAAA CGCTGCGT TTATG ACGGAGCG TTTTTGTTTTTGGTT TERM 539 498931 - 498951 + T 100 -7.5 -5.67529 | opp_overlap 498931, overlap 498916 CCGAAAACGAAAAAA CGCTGCGTT TAT GACGGAGCG TTTTTGTTTTTGGTT Shal_0424 499710 - 499051 - | GTP cyclohydrolase I TERM 540 499287 - 499277 - G 77 -6.8 -4.41348 | opp_overlap 499276 499277 CGCTGGGCAAAGAAA CGCA CGA TGCG GTTAATCTTAGACAG TERM 541 499927 - 499909 - R 100 -11.8 -5.59879 | opp_overlap 499909 TAGAAAGACAAAAAA GCCGATAA TTC TTATCGGC TTTTTGAATTGCAGC TERM 542 499909 - 499927 + r 100 -11.8 -4.74103 | opp_overlap 499909 TAGAAAGACAAAAAA GCCGATAA TTC TTATCGGC TTTTTGAATTGCAGC Shal_0425 501911 - 499947 - | peptidase S9 prolyl oligopeptidase TERM 543 502006 - 502030 + r 85 -7.2 -4.86001 | opp_overlap 502006 AGTCGTAGGAGGAAA TGGCAGCA TGTATGGTC TGCTGCCA TTTTTATAGAATAAT Shal_0426 502638 - 502045 - | nucleoid occlusion protein TERM 544 502383 - 502401 + g 77 -3.8 -5.14163 | opp_overlap 502370, overlap 502377 ACTGCAGCAGTTGCT GACAACGT TTC ATGGTGTC TTTTTCTTCATCCAT Shal_0427 503197 - 502739 - | deoxyuridine 5'-triphosphate nucleotidohydrolase Shal_0428 504390 - 503197 - | phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase TERM 545 504704 - 504716 + G 70 -9.1 -3.29829 | ATTAATGAGTTTGGT GGCCT TAG AGGCC TTCTGGCAGCGTCTC TERM 546 505171 - 505184 + G 78 -6.7 -4.72007 | CCATATGGTTGTAGG CGATC GAGA GATCG TTTCTTTTGCTGAAC Shal_0429 504539 - 505216 + | DNA repair protein RadC TERM 547 505406 - 505427 + G 78 -5.1 -5.09225 | gap 1, overlap 505400 ACAACCGTTCGCACG CGAAGAACGC AAC GCGT-CGTCG TTTTTTACCTAACCT Shal_0430 505345 - 505581 + | ribosomal protein L28 TERM 548 505687 - 505671 - g 82 -2.9 -5.48825 | CACGACTGAAAAAAA CAAGCGT AAC ATGCCTG AAAAAATGGAAATCA Shal_0431 505588 - 505761 + | 50S ribosomal protein L33 TERM 549 505805 - 505788 - f 73 -5.5 -4.58663 | opp_overlap 505788 AGCATCTTGGAAAAA GCCTCTA TTTA TAGGGGC TTTTTTTTGCCTAAA TERM 550 505788 - 505805 + F 100 -7.7 -5.81412 | opp_overlap 505788 AGCATCTTGGAAAAA GCCTCTA TTTA TAGGGGC TTTTTTTTGCCTAAA TERM 551 506017 - 506032 + F 70 -3.3 -4.89393 | TTGCTGTATGAGGTG CCTAT TTAAAT ATAGG TTTTTCTGGGGTTTA Shal_0432 506236 - 507558 + | N-acetylglutamate synthase Shal_0433 507652 - 508158 + | hypothetical protein TERM 552 508157 - 508206 + T 77 -10.3 -3.43965 | gap 1, opp_overlap 508171, overlap 508158 508171 GGTTATTGAGTCGAT AGCC-AAAAAAAAAAGCGAACC AGAATAA GGTTCGCTTTTTTTGTTAGGCG TTATAGCTTAGGTTT TERM 553 508158 - 508205 + T 91 -13.8 -2.65656 | gap 1, opp_overlap 508171, overlap 508157 508171 GTTATTGAGTCGATA GCC-AAAAAAAAAAGCGAACC AGAATAA GGTTCGCTTTTTTTGTTAGGC GTTATAGCTTAGGTT TERM 554 508171 - 508191 + T 100 -8.3 -5.7946 | opp_overlap 508171, overlap 508158 508157 TAGCCAAAAAAAAAA GCGAACC AGAATAA GGTTCGC TTTTTTTGTTAGGCG TERM 555 508191 - 508171 - T 100 -8.3 -6.38039 | opp_overlap 508171 508158 508157 TAGCCAAAAAAAAAA GCGAACC AGAATAA GGTTCGC TTTTTTTGTTAGGCG Shal_0434 509094 - 508207 - | transporter DMT superfamily protein TERM 556 508573 - 508584 + g 70 -2.2 -5.08824 | TAAGCCTGTCTTGGC GTCG ACAT TGAC TTTTTTACGTAGCAA Shal_0435 509724 - 509260 - | hypothetical protein Shal_0436 509886 - 511709 + | ATP-dependent DNA helicase RecQ Shal_0437 513795 - 512014 - | response regulator receiver protein TERM 557 513169 - 513183 + g 83 -4.2 -5.28166 | AAGCGCCTTATCTAG AAAGCC ATT GGCTTC TTTTTGTTCATTTTC TERM 558 514296 - 514278 - H 82 -8.8 -4.24342 | opp_overlap 514278 GCCTGCATTAATAAA CCCCGC TAATAAC GCGGGG TTTTTTGTATTTATA TERM 559 514278 - 514296 + H 100 -8.8 -5.59879 | opp_overlap 514278 GCCTGCATTAATAAA CCCCGC TAATAAC GCGGGG TTTTTTGTATTTATA Shal_0438 514383 - 515954 + | 2-isopropylmalate synthase Shal_0439 516033 - 517127 + | 3-isopropylmalate dehydrogenase TERM 560 518465 - 518502 + G 84 -7.5 -4.78753 | overlap 518466 CGTACTCACTTAGTG AGCCCTGCCATGGCGGC AGCT GCAGCCGTTGCAGGCCA TTTTGTTGATATTCG TERM 561 518466 - 518501 + G 79 -11 -3.46167 | overlap 518465 GTACTCACTTAGTGA GCCCTGCCATGGCGGC AGCT GCAGCCGTTGCAGGCC ATTTTGTTGATATTC Shal_0440 517130 - 518530 + | isopropylmalate isomerase large subunit Shal_0441 518540 - 519145 + | isopropylmalate isomerase small subunit TERM 562 519207 - 519231 + F 73 -5.8 -4.62772 | TTGAGTTTTGCTGAA GCCATTTAGA TTTTT TATAAATGGC TTTGTTTAATTTAGC TERM 563 519937 - 519922 - g 71 -7.6 -3.86283 | TGAAGTGACATCAAA TGGTGT TACC ACACCA TCATCAGCAAAAGAC TERM 564 519967 - 519950 - g 76 -7.7 -4.32034 | opp_overlap 519950 519958 CCATCATCAGCAAAA GACATCG CAGG CGATGCC GTTGTACCAAACTTC Shal_0442 519659 - 520945 + | membrane protein involved in aromatic hydrocarbon degradation TERM 565 520969 - 520986 + F 72 -9.9 -3.09135 | TCCAGTACGGATTTG CCTTAGC CAAC GCTAAGG TGTGTTAGCCCTTAT TERM 566 521016 - 521033 + F 100 -10.5 -5.79595 | opp_overlap 521016 TGGTGTTAACCAAAA GCCTCGC ATAT GCGGGGC TTTTTTGTTTTCAGC TERM 567 521033 - 521016 - f 85 -8.3 -4.4078 | opp_overlap 521016 TGGTGTTAACCAAAA GCCTCGC ATAT GCGGGGC TTTTTTGTTTTCAGC Shal_0443 521230 - 521766 + | hypothetical protein Shal_0444 521778 - 523259 + | glycerol kinase Shal_0445 523752 - 523288 - | hypothetical protein Shal_0446 524257 - 524715 + | cell division protein MraZ TERM 568 525439 - 525451 + G 71 -6.9 -4.1523 | CATTAACGGTATTGG CGCCT GAA GGGCG TTTATCTGTGATCAG Shal_0447 524745 - 525692 + | S-adenosyl-methyltransferase MraW Shal_0448 525710 - 526024 + | cell division protein FtsL TERM 569 527378 - 527365 - g 72 -5.9 -4.43392 | TTAAAACTAAAACAA GCGCC ACAA GGCAC ACAAGTCATTTCACC Shal_0449 526021 - 527757 + | peptidoglycan glycosyltransferase Shal_0450 527757 - 529223 + | UDP-N-acetylmuramyl-tripeptide synthetase Shal_0451 529220 - 530599 + | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase Shal_0452 530599 - 531681 + | phospho-N-acetylmuramoyl-pentapeptide-transferase Shal_0453 531711 - 533030 + | UDP-N-acetylmuramoylalanine--D-glutamate ligase TERM 570 533213 - 533223 + G 79 -8.2 -4.30161 | opp_overlap 533208 AGGCACAAACGTTAA CGGG TAA CCCG TTTCATTTTGTGTGG TERM 571 534157 - 534169 + G 70 -9.1 -3.33737 | TGGGTCATGACGGCG GCAGC CAT GCTGC TTATCCGGATTGATC Shal_0454 533020 - 534240 + | cell division protein FtsW Shal_0455 534249 - 535346 + | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase TERM 572 536503 - 536529 + G 70 -8.8 -3.30124 | opp_overlap 536515 TACAGTCGTACCCGC GACCTGTATGAA GAC TTCGTAGAGGTC TTATCGCAAGTAGAC Shal_0456 535348 - 536817 + | UDP-N-acetylmuramate--alanine ligase TERM 573 536845 - 536811 - f 90 -5.1 -5.66989 | TAAAGATGAAAAAAA TGCGTAACTTAGCGT TAGAT AAGTTAAGTTACACA TCAAATTTTGACGCT TERM 574 537426 - 537404 - g 79 -7.8 -4.44667 | opp_overlap 537422 GGCCTGAAGAACAAA GTAAGTCG GTGCTTA CGACTTAC CAACAGCTTGGTGAG Shal_0457 536923 - 537687 + | polypeptide-transport-associated domain-containing protein Shal_0458 537691 - 538926 + | cell division protein FtsA TERM 575 539597 - 539581 - g 71 -10.1 -3.14132 | CCCTGGTTTGATTAA CGTCGAC TTC GCCGACG TGAAAACGGTTATGT Shal_0459 538958 - 540145 + | cell division protein FtsZ TERM 576 540253 - 540291 + F 76 -2.4 -5.46657 | overlap 540260 TAAGATATCCGACCA GCATCGCCTATACACG ACTAAAA CGTGTGTAGTTAGTGC TTTTTTGTTGAGATA TERM 577 541213 - 541190 - g 100 -13.2 -4.58395 | opp_overlap 541193 541196 541199 GTGAGCTTTGAAAAA GAAGCCGACG CACC CGTCAGCTTC TCAGTACCTGCGGGT Shal_0460 540323 - 541243 + | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase TERM 578 541261 - 541295 + T 100 -15.1 -4.12456 | opp_overlap 541258, overlap 541267 GCGAATTAAGATTGC CTTGAACGGCTGGCT AATGC AGCCAGCCGTTTTAG TTTTACCGCTAATGT TERM 579 541267 - 541289 + T 100 -14.9 -4.67038 | opp_overlap 541258, overlap 541261 TAAGATTGCCTTGAA CGGCTGGCT AATGC AGCCAGCCG TTTTAGTTTTACCGC Shal_0461 541703 - 541251 - | hypothetical protein TERM 580 542331 - 542314 - g 74 -7 -4.21933 | TCAACGGTAAAAGAA CGATGC ATAAAG GCATCG ACTTCGCCGGAAAAG Shal_0462 541731 - 542630 + | peptidase M23B TERM 581 542848 - 542830 - g 75 -3.1 -5.13016 | gap 1, opp_overlap 542830, overlap 542823 AATTAAAAGCAAAAA CGCTCCAC TTCC GCG-AGCG TTTAGACGGTGGTGA TERM 582 543671 - 543657 - g 72 -5 -4.56775 | opp_overlap 543665, overlap 543670 ACCCTGTTTGAAAAA GACGTA GAC TACATC GTTCAAGATAACGAA TERM 583 543807 - 543797 - g 74 -5.4 -4.68645 | TATTCAAAATGAAAA CCAA ACT TTGG CATCGATTACTTTCC TERM 584 544124 - 544109 - g 82 -5.4 -5.10665 | ACTGAAGAAAGAAAA GATCCC GCAT GAGATC TTGAACGCTAAGTTC TERM 585 544995 - 544983 - g 72 -4.8 -4.66833 | CGTCAATTCGAAAAA GCAG TAATG CTGC AAACGCTAGATGGCC Shal_0463 542691 - 545414 + | preprotein translocase subunit SecA TERM 586 545465 - 545435 - T 82 -11.2 -3.15236 | opp_overlap 545440, overlap 545440 CAAATGTATACTGAA GAAAAGGGTGACTC ATT GAGTCGCCCTTTTT TATTGCTCGAAATTG TERM 587 545460 - 545440 - T 93 -11.1 -4.70169 | opp_overlap 545440, overlap 545435 GTATACTGAAGAAAA GGGTGACTC ATT GAGTCGCCC TTTTTTATTGCTCGA TERM 588 545440 - 545460 + T 100 -13.3 -5.5112 | opp_overlap 545440 545435 GTATACTGAAGAAAA GGGTGACTC ATT GAGTCGCCC TTTTTTATTGCTCGA TERM 589 546128 - 546111 - T 79 -9.9 -3.6215 | TTAAGTTATTCGAAA TTGCCTC TCAC GAGGCAA TCAAAAAATTACTTA TERM 590 547926 - 547959 + T 73 -7 -4.15854 | TCCACTCTGACCCAC CAAAATCTTTATTT TCTCCT AAAGAAAGATTTTG TTTTAACGTAAATTT TERM 591 548150 - 548118 - T 79 -10.8 -3.12142 | opp_overlap 548119, overlap 548116 548114 548125 TGCACAGGTAAGAGA TGCCAAAGATAAAT GCAGA ATTTATCTTTGGCT TTTTTAAGCCCGCTC TERM 592 548119 - 548149 + T 100 -14.3 -5.00884 | opp_overlap 548118 548116 548114 548125 GCACAGGTAAGAGAT GCCAAAGATAAAT GCAGA ATTTATCTTTGGC TTTTTTAAGCCCGCT TERM 593 548928 - 548916 - T 85 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 594 549726 - 549710 - T 86 -9.4 -4.08546 | overlap 549723 ATGAGTAACGATAAA GGGGGT GAAAA ACCCCC TCGCCGAAAGACCAA TERM 595 550232 - 550221 - T 72 -4.4 -4.7254 | ACTGTTTATCAAAAA CACA GTAC TGTG CAAACTCGCAAGAGG TERM 596 551666 - 551702 + T 100 -13.9 -3.96705 | opp_overlap 551675, overlap 551667 551675 551701 TTACTCGTTAAGAGT AGTGAAAAAGCCACCTT ATT AAGGTGGCTTTTTTGCG TTTGGGTTTTATAAG TERM 597 551667 - 551701 + T 100 -17.4 -2.973 | opp_overlap 551675, overlap 551666 551675 TACTCGTTAAGAGTA GTGAAAAAGCCACCTT ATT AAGGTGGCTTTTTTGC GTTTGGGTTTTATAA TERM 598 551693 - 551675 - T 100 -13.2 -4.70266 | opp_overlap 551667 551666 551675 AAGAGTAGTGAAAAA GCCACCTT ATT AAGGTGGC TTTTTTGCGTTTGGG TERM 599 551675 - 551693 + T 100 -13.2 -5.22039 | opp_overlap 551675, overlap 551667 551666 AAGAGTAGTGAAAAA GCCACCTT ATT AAGGTGGC TTTTTTGCGTTTGGG TERM 600 552009 - 552030 + T 87 -6.5 -5.21709 | opp_overlap 552009 AAGAGAATCGATAAA GCCCGTTGC TAAC GCAATAGGC TTTTTTAGTATAAGC TERM 601 552368 - 552351 - T 81 -11.3 -2.93585 | opp_overlap 552347, overlap 552348 552353 CCATAGGGTAAAGCA GAGCCAC TTTT GTGGCTC AGGGCTGTTTATGGC Shal_0464 552786 - 552397 - | mutator MutT protein TERM 602 552486 - 552498 + g 75 -6.2 -4.41047 | CCCAGCTGACTTGTT GGCC CTCAA GGCC TTTTGCTTCGCCGCT Shal_0465 553022 - 552783 - | hypothetical protein Shal_0466 553816 - 553082 - | hypothetical protein TERM 603 553732 - 553776 + g 81 -5 -5.26875 | gap 1, overlap 553734 CTTGATCTAGGTTAG CCTGTAGCTGT-TGTGCCAAG TATT CTAGGCGCAGGTAGCTACGAG TTTTTTCGTTCAAAG Shal_0467 554430 - 553825 - | dephospho-CoA kinase Shal_0468 555370 - 554459 - | prepilin peptidase TERM 604 555160 - 555173 + g 75 -3.1 -5.16841 | gap 1 GGAAAGCATCGATTG GC-GCT TCG AGCTGC TTTTTGTTGCTATCG TERM 605 555304 - 555287 - G 84 -8.3 -4.7173 | CACTACATTTAAAAA GCTGCCG ATAA CGGCGGC GAAGACAAAGCTTAA TERM 606 555345 - 555331 - G 71 -3.5 -4.87786 | TTAACGCGATAAAAA GCCAA GGATT CTGGC CAAAAACAGAAATTA Shal_0469 556710 - 555448 - | type II secretion system protein TERM 607 555724 - 555734 + g 74 -5.4 -4.63184 | CATGCCCGACATCAC TTCG GTG CGAA TTTTTAAAATAGCTT Shal_0470 558462 - 556756 - | type IV-A pilus assembly ATPase PilB TERM 608 558530 - 558484 - R 83 -9.1 -4.09685 | gap 1, opp_overlap 558484 558493 558525 558526, overlap 558488 558493 TTGTATCGCTTAAAA GTA-ATGAAAGGATAACCAAAA TTTA TTGTGGTTATCCTTTCATCTAA GCTTTCTTAGAATTC TERM 609 558525 - 558488 - R 100 -15.9 -3.67175 | opp_overlap 558484 558493, overlap 558484 558493 ATCGCTTAAAAGTAA TGAAAGGATAACCAAAA TTTA TTGTGGTTATCCTTTCA TCTAAGCTTTCTTAG TERM 610 558493 - 558520 + r 84 -10 -3.85114 | opp_overlap 558488 558484 558493, overlap 558484 TTAAAAGTAATGAAA GGATAACCAAAA TTTA TTGTGGTTATCC TTTCATCTAAGCTTT TERM 611 558520 - 558493 - R 86 -10 -4.07675 | opp_overlap 558493 558484, overlap 558488 558484 TTAAAAGTAATGAAA GGATAACCAAAA TTTA TTGTGGTTATCC TTTCATCTAAGCTTT Shal_0471 558989 - 558537 - | prepilin peptidase dependent protein D TERM 612 559530 - 559552 + r 85 -4.2 -5.55664 | opp_overlap 559530 CTGTGTTGTAAAGAT TGACGCTT GTTATTG AAGTGTCA TTTTTTTGGTGGTGA TERM 613 559662 - 559642 - R 83 -6.1 -5.03715 | ATGACGGCTAAAAAA GGCCAAGCA TTT CGCTTAACC TTTCTTGTTTTAGCC TERM 614 559782 - 559762 - R 73 -8.3 -3.66018 | opp_overlap 559762 TTATGATGCTAATAA GGCTTACGT GTT ACTTAAGCC TTAATGAGAGATCCA Shal_0472 560656 - 559772 - | nicotinate-nucleotide pyrophosphorylase Shal_0473 560903 - 561445 + | N-acetyl-anhydromuranmyl-L-alanine amidase Shal_0474 561542 - 562393 + | regulatory protein AmpE TERM 615 563309 - 563295 - g 80 -7.2 -4.55721 | AAACGTGACACAAAA CTTAGA GCT TCTAAG CCGACGCGAAGAGGC Shal_0475 562753 - 563505 + | transcriptional regulator PdhR Shal_0476 563572 - 566235 + | pyruvate dehydrogenase subunit E1 Shal_0477 566248 - 567915 + | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase TERM 616 567923 - 567943 + F 100 -14.1 -5.31456 | opp_overlap 567923 TTTTGTAAAGTTAAA GGCTACTCA GAT TGAGTAGCC TTTTTTCTAGATTGC TERM 617 567943 - 567923 - f 100 -14.1 -3.84451 | opp_overlap 567923 TTTTGTAAAGTTAAA GGCTACTCA GAT TGAGTAGCC TTTTTTCTAGATTGC Shal_0478 568136 - 569563 + | dihydrolipoamide dehydrogenase TERM 618 569616 - 569593 - f 93 -14 -3.17392 | opp_overlap 569593 569597, overlap 569597 TAGCTTCCAATCCAA TAAAGCGCTC TTTT GAGCGCTTTA TTATTTTCAGCTGCT TERM 619 569593 - 569616 + F 100 -14 -4.20148 | opp_overlap 569593 569597, overlap 569597 TAGCTTCCAATCCAA TAAAGCGCTC TTTT GAGCGCTTTA TTATTTTCAGCTGCT TERM 620 569612 - 569597 - f 89 -10.4 -4.2528 | opp_overlap 569593 569597, overlap 569593 TTCCAATCCAATAAA GCGCTC TTTT GAGCGC TTTATTATTTTCAGC TERM 621 569597 - 569612 + F 93 -10.4 -4.67697 | opp_overlap 569597 569593, overlap 569593 TTCCAATCCAATAAA GCGCTC TTTT GAGCGC TTTATTATTTTCAGC Shal_0479 569720 - 574183 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 622 575731 - 575746 + G 72 -3.2 -5.00884 | ACGGGTGGAGTATGA GCTCAA AGAC TGGAGC TTTTTTGAGAACAAT TERM 623 576408 - 576432 + G 73 -7.7 -4.09685 | opp_overlap 576411, overlap 576413 ACTTAGGTATCGATA CCAGCGTCGGC CCC GCCGCCTTTGG TTTTGGCGCGTCAGA TERM 624 576413 - 576427 + G 74 -7 -4.19735 | opp_overlap 576411, overlap 576408 GGTATCGATACCAGC GTCGGC CCC GCCGCC TTTGGTTTTGGCGCG Shal_0480 574277 - 576493 + | patatin TERM 625 576515 - 576532 + T 95 -9.1 -5.45802 | opp_overlap 576515 576529 CTTGTTCTATTTAAA GCCCGTC GAAA GATGGGC TTTTTGTTTTCAGCC Shal_0481 577319 - 576654 - | 2-deoxyglucose-6-phosphatase Shal_0482 577723 - 580320 + | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase TERM 626 580395 - 580363 - T 100 -14.4 -5.19879 | gap 1, opp_overlap 580370, overlap 580370 TCTGAAATAGAAAAA CTAAAAAGGCCTGCT AATT AGCAGGCCTTTTT-G TTAATTCATTTTAAA TERM 627 580389 - 580370 - T 100 -13.6 -5.2197 | opp_overlap 580370, overlap 580363 TAGAAAAACTAAAAA GGCCTGCT AATT AGCAGGCC TTTTTGTTAATTCAT TERM 628 580370 - 580389 + T 100 -13.6 -5.20534 | opp_overlap 580370 580363 TAGAAAAACTAAAAA GGCCTGCT AATT AGCAGGCC TTTTTGTTAATTCAT Shal_0483 580919 - 580452 - | anti-RNA polymerase sigma 70 factor TERM 629 581094 - 581065 - H 100 -16.5 -5.18371 | opp_overlap 581059 581058, overlap 581066 581081 CGTTATAAAATAAAA TGCCCAGCGATAG AAAT CTATCGCTGGGCG AGTAAAGTTTGTAGC TERM 630 581093 - 581066 - H 100 -20 -3.69938 | opp_overlap 581059 581058, overlap 581065 581081 GTTATAAAATAAAAT GCCCAGCGATAG AAAT CTATCGCTGGGC GAGTAAAGTTTGTAG Shal_0484 581451 - 582515 + | uroporphyrinogen decarboxylase TERM 631 582570 - 582545 - f 84 -10.5 -3.794 | opp_overlap 582545 582549, overlap 582549 CGCTAAGCGATTAAA TAAAGGCTCAG TTTA CTGGGCCTTTA TTGTTTCTGTGGTTT TERM 632 582545 - 582570 + F 100 -12.7 -4.19324 | opp_overlap 582545 582549, overlap 582549 CGCTAAGCGATTAAA TAAAGGCTCAG TTTA CTGGGCCTTTA TTGTTTCTGTGGTTT TERM 633 582549 - 582566 + F 88 -9.1 -4.65458 | opp_overlap 582545 582549, overlap 582545 AAGCGATTAAATAAA GGCTCAG TTTA CTGGGCC TTTATTGTTTCTGTG TERM 634 582566 - 582549 - f 79 -6.9 -4.5123 | opp_overlap 582549 582545, overlap 582545 AAGCGATTAAATAAA GGCTCAG TTTA CTGGGCC TTTATTGTTTCTGTG TERM 635 584795 - 584768 - g 75 -11.2 -3.10975 | opp_overlap 584766 584765 ACTCAGGATCCAAGA TGCGGGGGGAAG AATT CTACCCCCTGCA CAATTTATTGCTGCT Shal_0485 582852 - 585419 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shal_0486 585627 - 585409 - | hypothetical protein TERM 636 585859 - 585842 - R 100 -11.3 -5.29782 | overlap 585831 TACAGGCATAAAAAA GCCCTGT GCTA ACAGGGC TCATAATCGGAGTTA Shal_0487 587296 - 585995 - | phosphoribosylamine--glycine ligase TERM 637 587362 - 587374 + r 71 -4.1 -4.9448 | ACTCATGTATTGGCA TACAC TCC GTGTG TTTTCTTTGCTCAAT TERM 638 587475 - 587447 - R 70 -8.9 -3.10775 | overlap 587446 AGCTTGAGGCAAAAT TCCTAGGACCTAG AAC CTAGAACCTAGAA CCTAAAGCTTCATAC Shal_0488 589083 - 587494 - | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase TERM 639 588781 - 588802 + g 70 -5.1 -4.45817 | overlap 588778 588784 ATACAAGTTAACCGC CACCAAGTC GATC GGCTTGATG TTGTTTTGTTCCATT TERM 640 589317 - 589336 + H 75 -7.9 -4.13654 | opp_overlap 589311 CAGAATAACCCTTGA CCTTGGA TACAAC TCCAAGG TTTATACTTTAGAAA Shal_0489 589431 - 589946 + | zinc-responsive transcriptional regulator Shal_0490 589949 - 591298 + | permease TERM 641 591359 - 591376 + F 100 -11.3 -5.61881 | opp_overlap 591359 TTTGGTAAGGTAAAA GGCACTC ATTT GAGTGCC TTTTTGTTTTTGGGC TERM 642 591376 - 591359 - f 93 -11.3 -4.27316 | opp_overlap 591359 TTTGGTAAGGTAAAA GGCACTC ATTT GAGTGCC TTTTTGTTTTTGGGC TERM 643 591631 - 591643 + G 78 -5.5 -4.91109 | overlap 591632 TAGTAATGATGATAT TTCGG TAA CCGAG TTTTTCTGGTACGGC Shal_0491 591473 - 592141 + | DSBA oxidoreductase TERM 644 592291 - 592313 + F 77 -7.8 -4.23758 | opp_overlap 592291 592294, overlap 592292 TTTAGGCCTGACAGA TCATTGCGTT CAT AATGCAATGG TTTTAGGTGTGCCAT TERM 645 592292 - 592312 + F 70 -9.1 -3.13773 | opp_overlap 592291 592294, overlap 592291 TTAGGCCTGACAGAT CATTGCGTT CAT AATGCAATG GTTTTAGGTGTGCCA Shal_0492 592862 - 593443 + | molybdopterin oxidoreductase Fe4S4 region Shal_0493 593492 - 595879 + | formate dehydrogenase, alpha subunit Shal_0494 595882 - 596784 + | formate dehydrogenase, beta subunit Shal_0495 596790 - 597434 + | formate dehydrogenase, gamma subunit Shal_0496 597437 - 598417 + | formate dehydrogenase accessory protein FdhE TERM 646 598441 - 598462 + F 88 -8.7 -4.68384 | opp_overlap 598441 AAGTAAGTCAAACAA GAGCCGTAT TTCG GTGCGGCTC TTTTATTAACTGAGT Shal_0497 598563 - 600011 + | selenocysteine synthase Shal_0498 600008 - 601924 + | selenocysteine-specific translation elongation factor TERM 647 602952 - 602978 + G 79 -8.2 -4.31835 | overlap 602950 TGCAAAAAGCCGCTA TTGCAAATATTA GTA TTATATTTGCAA TTTCTTCTGCAACTT Shal_0499 602282 - 603145 + | formate dehydrogenase family accessory protein FdhD TERM 648 604408 - 604392 - g 80 -6.6 -4.77757 | CTTTAAAAAGCAAAA CAGCTT GAAAG AAGCTG CACTAGCCAATGTCG Shal_0500 603217 - 604458 + | putative inner membrane protein TERM 649 604493 - 604512 + F 90 -8.6 -5.14563 | ATTTACTTTATATTC GGCTCAAG TTGA TTTGAGCC TTTTTTGCTGAGGAG Shal_0501 604534 - 604770 + | hypothetical protein TERM 650 604811 - 604795 - T 100 -12.3 -5.60689 | opp_overlap 604795 604808 604809 GCAGACAATAAAAAA GGCACTC ATT GAGTGCC TTTTTGCTGACTCGC TERM 651 604795 - 604811 + T 100 -12.3 -4.7497 | opp_overlap 604795, overlap 604808 604809 GCAGACAATAAAAAA GGCACTC ATT GAGTGCC TTTTTGCTGACTCGC Shal_0502 605597 - 604869 - | hypothetical protein TERM 652 606226 - 606246 + H 75 -5.6 -4.73633 | opp_overlap 606233 GCGCTGGTTTTTGTT TGATTAAT TAAAT ATTAATCA TTTTATGTATTATTG Shal_0503 606401 - 608467 + | hypothetical protein Shal_0504 609541 - 608594 - | LysR family transcriptional regulator TERM 653 609222 - 609203 - G 71 -7.8 -3.88787 | overlap 609204 GTAGAGCGCCAGAAA CTGGGCGA AGAC CCGCCCAA AATAGAGCTGACCCA TERM 654 609852 - 609837 - g 72 -3.2 -5.06451 | CAGCATGTCAAAAAA GGTCAA TTAC TTGCCC AATTGGAAGATAATC Shal_0505 609636 - 610709 + | secretion protein HlyD family protein TERM 655 610802 - 610819 + G 71 -7.7 -3.92143 | gap 1, overlap 610815 610816 TGGATCGCGGTATTT GGCGGCCT GAT AGGC-GCC TTTATGGCGATTTTA Shal_0506 610709 - 612298 + | EmrB/QacA family drug resistance transporter TERM 656 612344 - 612373 + F 72 -8.6 -3.54935 | opp_overlap 612335 TCAAAATGAATCCGT TCAACCGCTGCT TTATAC GGCAGAGGTTGA TTTAACGCGACTTTG Shal_0507 612455 - 612913 + | GCN5-related N-acetyltransferase TERM 657 612937 - 612952 + T 100 -10.4 -5.1925 | opp_overlap 612937 AATCGATATGAAAAA GCGCAC TCAA GTGCGC TTTTTTGCGTTATGA TERM 658 612952 - 612937 - T 93 -10.4 -4.82154 | opp_overlap 612937 AATCGATATGAAAAA GCGCAC TCAA GTGCGC TTTTTTGCGTTATGA Shal_0508 613242 - 612991 - | hypothetical protein Shal_0509 613404 - 613520 + | hypothetical protein Shal_0510 613638 - 615047 + | phage integrase family protein TERM 659 617038 - 617024 - g 73 -4.2 -4.73613 | overlap 617026 TTACCACTAACAAAA CATCGT ATC ACGAGG GGGGCTACGACATCC Shal_0511 615040 - 618558 + | integrase family protein Shal_0512 618555 - 619193 + | hypothetical protein Shal_0513 619957 - 619550 - | hypothetical protein TERM 660 620110 - 620098 - R 72 -4.7 -4.74801 | opp_overlap 620099, overlap 620099 GAACTCCATTAAAAA TGGGG GGC CCCCT GTGTCAGGATAGTGA Shal_0514 621074 - 620220 - | RNA-directed DNA polymerase (Reverse transcriptase) TERM 661 621401 - 621422 + r 79 -10.9 -3.12351 | opp_overlap 621363 621400 ATGATAGCTATATAT CGTTAGTCG TCAA CGACTAGCG TTGAATCTAAAAGAA Shal_0515 622620 - 621748 - | hypothetical protein TERM 662 623045 - 623018 - g 74 -5.6 -4.58283 | gap 1, overlap 623022 GAAGTTGCCCAAAAA CACACCACTT-TG GGA CAGAAGTGGAGCG ATACAACTCAGACCC Shal_0516 622764 - 624056 + | hypothetical protein Shal_0517 624205 - 625347 + | RNA-directed DNA polymerase Shal_0518 625997 - 625443 - | hypothetical protein TERM 663 626724 - 626712 - R 70 -9.1 -3.26717 | opp_overlap 626712, overlap 626707 AGCTATATAACTTAA GGGAG TAA CTCCC TTACATCACACTCCA Shal_0519 626914 - 626708 - | XRE family transcriptional regulator Shal_0520 627047 - 627586 + | hypothetical protein TERM 664 628679 - 628667 - g 91 -7.7 -5.19819 | AAATAAAAGCAAAAA CCAAG AAG CTTGG CTATACACTTTTGCA Shal_0521 627591 - 629000 + | type III restriction protein res subunit TERM 665 629018 - 629028 + T 75 -5.4 -4.7254 | overlap 629022 CAGAAACCTTATTTA TGGT GCC ACCA TTTTTAATGGCAGCT Shal_0522 632233 - 629102 - | ATPase involved in DNA repair-like protein TERM 666 629887 - 629869 - G 76 -7.5 -4.33004 | AGCGAACCAAAATAA TATGGGA TAAGC TCCCATA AAAAGCGTTAACTGC Shal_0523 632762 - 632223 - | hypothetical protein Shal_0524 634089 - 632746 - | hypothetical protein Shal_0525 635122 - 634067 - | hypothetical protein Shal_0526 636106 - 635495 - | hypothetical protein Shal_0527 637411 - 636194 - | hypothetical protein TERM 667 636841 - 636855 + g 75 -6.4 -4.51699 | TGATTTCATTGTCAC CCTTGA TTT TCAGGG TTTTATCATCCTTAT TERM 668 637129 - 637147 + g 86 -9 -4.40963 | opp_overlap 637133, overlap 637133 TATTAATTATACTGT CAAATGAA CTT TTCATTTG TTGTTTTTGAGAACT TERM 669 637133 - 637143 + g 73 -4 -4.76802 | opp_overlap 637133, overlap 637129 AATTATACTGTCAAA TGAA CTT TTCA TTTGTTGTTTTTGAG Shal_0528 637905 - 638684 + | Elongator protein 3/MiaB/NifB Shal_0529 639638 - 638700 - | LysR family transcriptional regulator Shal_0530 640567 - 639635 - | LysR family transcriptional regulator Shal_0531 642199 - 641159 - | OmpA domain-containing protein TERM 670 642428 - 642402 - R 75 -9.4 -3.37164 | opp_overlap 642416, overlap 642400 642404 TGAAAAATAGCAATA GATAGCGGCGAA TCT TACGCCGCTATG GGGGTAATTAACTTA TERM 671 642426 - 642404 - R 83 -12 -3.23466 | opp_overlap 642416, overlap 642402 642400 AAAAATAGCAATAGA TAGCGGCGAA TCT TACGCCGCTA TGGGGGTAATTAACT Shal_0532 643277 - 642441 - | MscS mechanosensitive ion channel TERM 672 643742 - 643764 + G 72 -6.2 -4.29508 | TGGCTGATATCAGTG GCATGCCATC TTT GATTGCACGC TTTGTTGCTCTGCCT Shal_0533 643489 - 643947 + | hypothetical protein TERM 673 644005 - 644031 + T 91 -13.8 -2.7371 | opp_overlap 644011, overlap 644011 ACGCTAACTTGATGC AAAAAAGGGCGC TTT GCGCCCTTTTTA ATATTCTTATTCGGT TERM 674 644025 - 644011 - T 100 -12.8 -5.09225 | opp_overlap 644011 644005 ACTTGATGCAAAAAA GGGCGC TTT GCGCCC TTTTTAATATTCTTA TERM 675 644011 - 644025 + T 100 -12.8 -4.93316 | opp_overlap 644011, overlap 644005 ACTTGATGCAAAAAA GGGCGC TTT GCGCCC TTTTTAATATTCTTA Shal_0534 644261 - 644046 - | hypothetical protein Shal_0535 644757 - 645515 + | uridine phosphorylase TERM 676 645532 - 645560 + T 87 -12.6 -3.322 | opp_overlap 645504 645539, overlap 645539 CTTATGTTTATGCAG TAAAAAAGGCGC TATAT GCGCCTTTTTTG TTGGTCTATAACACT TERM 677 645553 - 645539 - T 90 -8.5 -5.1675 | opp_overlap 645532 645539 TTATGCAGTAAAAAA GGCGC TATAT GCGCC TTTTTTGTTGGTCTA TERM 678 645539 - 645553 + T 100 -8.5 -5.5353 | opp_overlap 645539, overlap 645532 TTATGCAGTAAAAAA GGCGC TATAT GCGCC TTTTTTGTTGGTCTA Shal_0536 646345 - 645593 - | hypothetical protein Shal_0537 646741 - 647220 + | hypothetical protein Shal_0538 647249 - 648178 + | band 7 protein Shal_0539 648178 - 649116 + | band 7 protein TERM 679 649139 - 649165 + F 93 -8.8 -5.28176 | opp_overlap 649137 649139 AACTATTGCTAAACA TGCTAGCTTCTA AAA TGGGAGTTAGCA TTTTTTATGGGTGAC Shal_0540 649449 - 649898 + | NUDIX hydrolase Shal_0541 652024 - 649940 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 680 651958 - 651947 - G 72 -5.8 -4.43832 | overlap 651944 CAATAGACAAAATAA GCCT ATGC AGGC ATTAAAAATGACCAT Shal_0542 652389 - 652742 + | endoribonuclease L-PSP TERM 681 652759 - 652786 + F 95 -13.6 -3.74462 | CATAGACAGCCTTCA TTACCGAGGTGA AAGC TCACTTCGGTAA TTCTCTCTTCTGCTT TERM 682 653090 - 653042 - g 70 -9.7 -2.95073 | overlap 653041 GGTTGAACAGCAAAG CCCTTATGCCATTTTAGCGGTAA CCT TTACCAATAAAGCGGCAAAAGAG ATGCGTGAGCGTGTT Shal_0543 652884 - 655049 + | DNA-dependent helicase II TERM 683 655837 - 655856 + G 73 -4.3 -4.89477 | ATAATCGCTGCCTTT CAGCTTG CGGCAT TAAGCTG TTTTATTATTGCGGG Shal_0544 655192 - 656055 + | 4-hydroxybenzoate octaprenyltransferase Shal_0545 657153 - 656167 - | putative esterase TERM 684 656804 - 656820 + g 81 -12.3 -3.24059 | opp_overlap 656802 AACTCCCATGAGATC CCGACGA TAA TCGTCGG TTGCATCTGTTTTGA TERM 685 657295 - 657280 - R 75 -2.5 -5.18371 | overlap 657281 GGCGATAAAATAAAA CGGCT AAGAGA AGCCA GTTAGAAGGTATCTT TERM 686 657315 - 657341 + r 100 -21 -4.4078 | opp_overlap 657315 GAAGGTATCTTATAA GTCAGCAGAGCC TTT GGCTCTGCTGAC TTTTGCTTAAAAGCG TERM 687 657341 - 657315 - R 100 -21 -3.33969 | opp_overlap 657315 GAAGGTATCTTATAA GTCAGCAGAGCC TTT GGCTCTGCTGAC TTTTGCTTAAAAGCG Shal_0546 657961 - 657383 - | hypothetical protein TERM 688 659061 - 659079 + G 71 -9.6 -3.28791 | TAGCGGTGCGTATTT TGGCGATA AGA TGTCGCCA TTGTCAGACACCACT Shal_0547 658504 - 660033 + | Na+/H+ antiporter NhaC TERM 689 660099 - 660073 - T 100 -13.8 -5.9873 | overlap 660090 660094 TCAGGACAAAAAAAA GCCTTGTCGGTT AGG AATCGACAAGGC ACTTGGCGTAGCTAT Shal_0548 660975 - 660391 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 690 660645 - 660661 + g 81 -5.1 -5.13741 | opp_overlap 660645 660648, overlap 660639 660648 CAATTGAGATAGGAA CCACAAC CAA GTTGTTG TTTTTATTAACTTGG TERM 691 660648 - 660658 + g 74 -5.4 -4.64495 | opp_overlap 660645 660648, overlap 660645 660639 TTGAGATAGGAACCA CAAC CAA GTTG TTGTTTTTATTAACT Shal_0549 661414 - 660968 - | cytochrome C biogenesis protein Shal_0550 663387 - 661411 - | cytochrome c-type biogenesis protein CcmF TERM 692 662336 - 662316 - G 74 -10.5 -3.17051 | overlap 662314 662317 662334 CTGCCACGATTAAGA CGATGTTGC CGA GCAACATCA CGCTATCTCGTGAGA TERM 693 662335 - 662317 - G 76 -11.8 -2.50016 | overlap 662316 662314 662334 TGCCACGATTAAGAC GATGTTGC CGA GCAACATC ACGCTATCTCGTGAG TERM 694 663010 - 662998 - G 79 -7.7 -4.44667 | GCCGGCAATAACAAA TGCCA AGA TGGCA ATCATGCGGCCAATA Shal_0551 663943 - 665979 + | cytochrome c, putative TERM 695 666028 - 665989 - f 82 -11.6 -3.10112 | overlap 665991 ATGTAATTGAGTTAA TACCGACCTCAACCTAAG GCTA CTTAGGTTGAGGTAACTA AGAGAGAAATTATGA TERM 696 666026 - 665991 - f 73 -9.8 -3.1085 | overlap 665989 GTAATTGAGTTAATA CCGACCTCAACCTAAG GCTA CTTAGGTTGAGGTAAC TAAGAGAGAAATTAT Shal_0552 666040 - 666468 + | rhodanese domain-containing protein TERM 697 666464 - 666477 + F 71 -3.9 -4.94811 | opp_overlap 666464 GAGTAACAGAAAAGC CATAA CGGA TTATG TTTATTTATTTTTAG Shal_0553 666506 - 667306 + | peptidylprolyl isomerase FKBP-type Shal_0554 667341 - 668069 + | cytochrome c biogenesis factor-like protein Shal_0555 668155 - 668862 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 698 669046 - 669003 - g 85 -6.2 -5.24129 | gap 1, opp_overlap 669007 669025, overlap 669007 669014 669016 CGTTTCTATAAAAAA CAAACTGAAAACA-CGCCTTT TTT AAAGGCGGCGTCTTTAGTTTC ATTAGTCACGATTGC TERM 699 669042 - 669007 - g 87 -7 -5.13354 | gap 1, opp_overlap 669007 669025, overlap 669003 669014 669016 TCTATAAAAAACAAA CTGAAAACA-CGCCTTT TTT AAAGGCGGCGTCTTTAG TTTCATTAGTCACGA TERM 700 669033 - 669014 - g 77 -7.2 -4.46617 | gap 1, opp_overlap 669007 669025, overlap 669007 669003 669016 AAAACAAACTGAAAA CACGCCTTT TTT AAAGGCG-G CGTCTTTAGTTTCAT TERM 701 669032 - 669016 - g 86 -10.9 -3.80537 | opp_overlap 669007 669025, overlap 669014 669007 669003 AACAAACTGAAAACA CGCCTTT TTT AAAGGCG GCGTCTTTAGTTTCA Shal_0556 668865 - 669812 + | polysulphide reductase NrfD Shal_0557 670161 - 670649 + | NosL family protein Shal_0558 670704 - 672062 + | periplasmic copper-binding Shal_0559 672062 - 673027 + | ABC transporter related Shal_0560 673029 - 673874 + | copper ABC transporter, permease protein TERM 702 673970 - 673989 + F 88 -10.7 -4.08945 | opp_overlap 673959 AACATTGGCGATGAT TGGCCGC ACATTG GCGGCCA TTTTGAGCCAATAAT Shal_0561 674084 - 675367 + | transcriptional regulator, CadC TERM 703 675433 - 675445 + F 72 -9.1 -3.34398 | overlap 675431 AACGATTAGCATCAT GGGAC TGC GTCCC TCTTTGGAAGCCCAC TERM 704 675455 - 675472 + F 93 -9.1 -5.27923 | overlap 675469 CGTCCCTCTTTGGAA GCCCACG GTTA TGTGGGC TTTTTTGTGCCCTTG TERM 705 675488 - 675515 + F 71 -7 -3.96531 | TTTTTTGTGCCCTTG GTTTGGCTGTGG TGCT CCACAGTTGAGC TTTGTCAATATGTGC TERM 706 675560 - 675574 + F 75 -10 -2.92463 | opp_overlap 675556 TGATAACTAACGTTA TGGGAC TGC GTCCCA TATATAGCTAATCAA TERM 707 676069 - 676103 + F 88 -11.4 -3.737 | opp_overlap 676070 676071, overlap 676071 TGATAATATTTAAAA ATGCAGCAGCGATAAC AAT GTTAGCGCTGCTGCTG TTTAATAAGACGTTA TERM 708 676102 - 676070 - f 100 -14.9 -4.76312 | opp_overlap 676069 676071, overlap 676071 GATAATATTTAAAAA TGCAGCAGCGATAAC AAT GTTAGCGCTGCTGCT GTTTAATAAGACGTT TERM 709 676071 - 676101 + F 100 -18.4 -3.45027 | opp_overlap 676070 676071, overlap 676069 ATAATATTTAAAAAT GCAGCAGCGATAAC AAT GTTAGCGCTGCTGC TGTTTAATAAGACGT TERM 710 676101 - 676071 - f 100 -18.4 -3.44703 | opp_overlap 676071 676069, overlap 676070 ATAATATTTAAAAAT GCAGCAGCGATAAC AAT GTTAGCGCTGCTGC TGTTTAATAAGACGT TERM 711 676473 - 676442 - g 75 -11 -2.9955 | gap 1, overlap 676444 TAATTAAAGATGAGA CAGGTTTTCTTACGG GTG CCG-AAGAAAGCCTG AGAAAAGCTATGTTA TERM 712 676490 - 676480 - g 72 -5.4 -4.41241 | opp_overlap 676487 GAAAGCCTGAGAAAA GCTA TGT TAGC TGACACAGCGTCAAC TERM 713 676562 - 676530 - g 78 -6.4 -4.61873 | GTCTATAAATGAAAA TCGTTGGGTTCA AATTAATAG TGAAACCAACGA AATTACGGTGTGTAA Shal_0562 676135 - 676587 + | hypothetical protein TERM 714 676599 - 676583 - f 76 -2.3 -5.40072 | overlap 676585 CGGTGTGTAAAAAAA TATAACA AGC TGTTAAA TCAGGACAAAATACT Shal_0563 676694 - 677131 + | hypothetical protein Shal_0564 677226 - 677543 + | hypothetical protein Shal_0565 678907 - 678248 - | lysine exporter protein LysE/YggA Shal_0566 679313 - 682120 + | hypothetical protein TERM 715 682138 - 682193 + F 90 -13 -2.63913 | gap 1, overlap 682140 GCTGACAGTTCTGGG TGGCTTTATTACAGCTGTTATTATAAC AAT GCTGTGATTA-AGCTGTAATAAAGCCA TCCTCTGCAATCATC TERM 716 682527 - 682510 - f 86 -7.7 -4.86731 | TTGCGTTAAATAAAA CAGCGCA GACT TACGCTG TAAGTGACCGATTTT Shal_0567 682834 - 684864 + | cytochrome c, putative TERM 717 684919 - 684879 - f 70 -8.9 -3.17194 | opp_overlap 684894, overlap 684908 AGCCGCCTAACTTAA CCGCCTCGGCATGCATTGC ACT GCGATAATTGCCGAGGCAA TAGAGAGAAAGATTA Shal_0568 684889 - 685362 + | rhodanese domain-containing protein Shal_0569 685413 - 686207 + | peptidylprolyl isomerase FKBP-type Shal_0570 686325 - 687038 + | TPR repeat-containing protein Shal_0571 687100 - 687810 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shal_0572 687813 - 688760 + | polysulphide reductase NrfD Shal_0573 688891 - 689421 + | NosL family protein Shal_0574 689476 - 690795 + | periplasmic copper-binding TERM 718 690827 - 690841 + F 76 -2.1 -5.44119 | gap 1, opp_overlap 690827 AACTGGCAGTAAATA TCAGCC ATTA GGC-GA TTTTTTTGCCCTAGA TERM 719 691307 - 691329 + G 83 -9 -4.36914 | opp_overlap 691304 691307, overlap 691308 GAAAGGGATGAAGCA GCGCCTTGGC TTT GCCCAGGCGA TTTTGTGCGAGCCAG TERM 720 691308 - 691328 + G 81 -12.5 -3.21934 | opp_overlap 691307 691304, overlap 691307 AAAGGGATGAAGCAG CGCCTTGGC TTT GCCCAGGCG ATTTTGTGCGAGCCA TERM 721 691610 - 691627 + G 73 -11.3 -2.59793 | opp_overlap 691610, overlap 691609 691608 GATGTGGGTAGAGCA GGAGCCA AGGC TGGCTCC CTATTATATCGATGA TERM 722 691627 - 691610 - g 73 -11.3 -2.62396 | opp_overlap 691610 691609 691608 GATGTGGGTAGAGCA GGAGCCA AGGC TGGCTCC CTATTATATCGATGA Shal_0575 690888 - 691796 + | ABC transporter related Shal_0576 691798 - 692628 + | ABC-2 type transporter TERM 723 692799 - 692821 + F 71 -4.2 -4.85267 | overlap 692801 ATCGGGATTGGTTGA TTTGATTTTC GGC GGAAATCACA TTTTTAATAATTTAT Shal_0577 692904 - 694187 + | transcriptional regulator, CadC TERM 724 694464 - 694489 + F 100 -12.7 -5.43487 | opp_overlap 694464 ACGAGATAAATCAAA GGCAAAACAGT TAAC GCTGTTTTGCC TTTTTTGTATCGTTT TERM 725 694489 - 694464 - f 95 -12 -4.18644 | opp_overlap 694464 ACGAGATAAATCAAA GGCAAAACAG TTAACG CTGTTTTGCC TTTTTTGTATCGTTT TERM 726 694668 - 694622 - f 100 -15.4 -3.08679 | opp_overlap 694622 694628, overlap 694628 TTGCTTCATGCAATA TCGAAACGTTTCGATTAGTC TTGTCCT GTCTTATCGAAACGTTTCGA TCGAATGGCTTTGCG Shal_0578 694732 - 695151 + | D-ribose pyranase TERM 727 696479 - 696465 - g 72 -2.8 -5.08824 | opp_overlap 696467, overlap 696467 GTGGGAGCGAAAAAA GAGATC TAC GATCTT ATCAACCGCTTCAAG Shal_0579 695169 - 696674 + | D-ribose transporter ATP binding protein Shal_0580 696671 - 697645 + | ribose ABC transporter permease protein TERM 728 697656 - 697677 + F 72 -4.4 -4.77567 | gap 1 CGTAATTTCTGATTA GCAGG-GCG TTTGT CGTTCCTGC TTTTGTTCTGAAAGT Shal_0581 697745 - 698644 + | D-ribose transporter subunit RbsB Shal_0582 698769 - 699686 + | ribokinase Shal_0583 699775 - 700779 + | LacI family transcription regulator TERM 729 700876 - 700842 - T 75 -7.9 -4.02022 | overlap 700843 GTTAAGTAGGATAAA TCGCGAGTGAATCAT AGCTA ATGACTCACTCGCCT ATAGCAACTGAATAG TERM 730 700875 - 700843 - T 81 -11.4 -3.00731 | overlap 700842 TTAAGTAGGATAAAT CGCGAGTGAATCAT AGCTA ATGACTCACTCGCC TATAGCAACTGAATA Shal_0584 701646 - 700936 - | FMN reductase Shal_0585 703239 - 701758 - | UbiD family decarboxylase TERM 731 702952 - 702940 - G 79 -10.5 -3.57462 | TATGGCATCTTTAAA GCCGC TAG GCGGC TCGGGCTCTTTTAGA Shal_0586 703462 - 704016 + | hypothetical protein Shal_0587 704873 - 704349 - | GCN5-related N-acetyltransferase Shal_0588 705501 - 704917 - | redoxin domain-containing protein TERM 732 705561 - 705535 - H 87 -12.4 -3.28368 | opp_overlap 705538, overlap 705533 705536 705538 ATGTAACTCACAAGA TCAGCTCTGTTA AAT TAACAGAGCTGT GATCGAATGTATAAG TERM 733 705560 - 705536 - H 100 -15.9 -2.56539 | opp_overlap 705538, overlap 705535 705533 705538 TGTAACTCACAAGAT CAGCTCTGTTA AAT TAACAGAGCTG TGATCGAATGTATAA TERM 734 705558 - 705538 - H 83 -12.7 -2.8176 | opp_overlap 705538, overlap 705536 705535 705533 TAACTCACAAGATCA GCTCTGTTA AAT TAACAGAGC TGTGATCGAATGTAT TERM 735 705538 - 705558 + H 83 -12.7 -2.80622 | opp_overlap 705538 705536 705535 705533 TAACTCACAAGATCA GCTCTGTTA AAT TAACAGAGC TGTGATCGAATGTAT Shal_0589 705955 - 707157 + | aromatic amino acid transporter TERM 736 707412 - 707445 + F 95 -14.7 -2.77962 | opp_overlap 707418, overlap 707418 CTCCGCCACATTCAA GATGAAGGGCTACTC AAAA GAGTAGCCCTTTTTC GTTTCGAGTATAAAG TERM 737 707418 - 707439 + F 100 -14.5 -4.99134 | opp_overlap 707418, overlap 707412 CACATTCAAGATGAA GGGCTACTC AAAA GAGTAGCCC TTTTTCGTTTCGAGT TERM 738 707439 - 707418 - f 100 -14.5 -3.38786 | opp_overlap 707418 707412 CACATTCAAGATGAA GGGCTACTC AAAA GAGTAGCCC TTTTTCGTTTCGAGT TERM 739 707529 - 707574 + F 95 -14.9 -2.73124 | opp_overlap 707535 707557, overlap 707535 CCTGCGCCACATTTA GAGAGAGGGCTTCCATTCTTT TAAT AGAGAGCGGAAGCCCTTTTTC GTTTGCGGAGTAGGA TERM 740 707535 - 707568 + F 100 -12.5 -4.98531 | opp_overlap 707535 707557, overlap 707529 CCACATTTAGAGAGA GGGCTTCCATTCTTT TAAT AGAGAGCGGAAGCCC TTTTTCGTTTGCGGA TERM 741 707568 - 707535 - f 75 -10.3 -3.01912 | opp_overlap 707535 707529, overlap 707557 CCACATTTAGAGAGA GGGCTTCCATTCTTT TAAT AGAGAGCGGAAGCCC TTTTTCGTTTGCGGA TERM 742 707842 - 707877 + F 100 -15.6 -3.63627 | opp_overlap 707849, overlap 707843 707849 CCCTCCGCCACATTT AGAGAAAGGGCTTCCA GTAA TGGAAGCCCTTTTTCG TTTCGGATATAAAGC TERM 743 707843 - 707876 + F 100 -19.1 -2.77962 | opp_overlap 707849, overlap 707842 707849 CCTCCGCCACATTTA GAGAAAGGGCTTCCA GTAA TGGAAGCCCTTTTTC GTTTCGGATATAAAG TERM 744 707870 - 707849 - f 100 -14.5 -4.07868 | opp_overlap 707843 707842 707849 CCACATTTAGAGAAA GGGCTTCCA GTAA TGGAAGCCC TTTTTCGTTTCGGAT TERM 745 707849 - 707870 + F 100 -14.5 -4.99134 | opp_overlap 707849, overlap 707843 707842 CCACATTTAGAGAAA GGGCTTCCA GTAA TGGAAGCCC TTTTTCGTTTCGGAT TERM 746 707991 - 707961 - f 100 -15.6 -3.00994 | opp_overlap 707966, overlap 707966 CCAACGCCATACATA GAAAAGCCCGCTAT TTT ATAGCGGGCTTTTT GCTCTTTGTGATTTA TERM 747 707986 - 707966 - f 100 -15.5 -4.64844 | opp_overlap 707966, overlap 707961 GCCATACATAGAAAA GCCCGCTAT TTT ATAGCGGGC TTTTTGCTCTTTGTG TERM 748 707966 - 707986 + F 100 -15.5 -4.96106 | opp_overlap 707966 707961 GCCATACATAGAAAA GCCCGCTAT TTT ATAGCGGGC TTTTTGCTCTTTGTG TERM 749 708073 - 708120 + F 73 -8.6 -3.67141 | gap 1, opp_overlap 708080, overlap 708074 708079 708080 CCGGGCACTACATTT AGAGAAAGGGCTTCCACTCTT GTTTGTA AAGAGTGGA-GCCCATTTTCA TTTGGATAAAATTCT TERM 750 708074 - 708119 + F 81 -12.1 -2.79803 | gap 1, opp_overlap 708080, overlap 708073 708079 708080 CGGGCACTACATTTA GAGAAAGGGCTTCCACTCTT GTTTGTA AAGAGTGGA-GCCCATTTTC ATTTGGATAAAATTC TERM 751 708079 - 708114 + F 87 -8.4 -4.56914 | gap 1, opp_overlap 708080, overlap 708074 708073 708080 ACTACATTTAGAGAA AGGGCTTCCACTCTT GTTTGTA AAGAGTGGA-GCCCA TTTTCATTTGGATAA TERM 752 708113 - 708080 - f 91 -11.9 -4.07868 | gap 1, opp_overlap 708080 708079 708074 708073 CTACATTTAGAGAAA GGGCTTCCACTCTT GTTTGTA AAGAGTGGA-GCCC ATTTTCATTTGGATA TERM 753 708080 - 708113 + F 86 -11.9 -3.33425 | gap 1, opp_overlap 708080, overlap 708079 708074 708073 CTACATTTAGAGAAA GGGCTTCCACTCTT GTTTGTA AAGAGTGGA-GCCC ATTTTCATTTGGATA TERM 754 709069 - 709057 - g 76 -4.8 -4.77036 | CGGTATGATGAAAAA GCTG ACTAA CAGC GCTGAATGTGTGTTT Shal_0590 708503 - 709846 + | glutamate dehydrogenase TERM 755 709867 - 709880 + F 100 -9.5 -5.79595 | opp_overlap 709867 TAGTATGTTTTTAAA GGGCC TTAG GGCCC TTTTTTGTTTTCGGC TERM 756 709880 - 709867 - f 77 -9.5 -3.54741 | opp_overlap 709867 TAGTATGTTTTTAAA GGGCC TTAG GGCCC TTTTTTGTTTTCGGC TERM 757 710186 - 710170 - f 86 -7.9 -4.91511 | opp_overlap 710171, overlap 710171 AGTTGACGATAAAAA CGGGGCT TTA AGCCCCT TTTTTGTACGTATCG TERM 758 710171 - 710185 + F 100 -11.4 -5.29782 | opp_overlap 710170 710171 GTTGACGATAAAAAC GGGGCT TTA AGCCCC TTTTTTGTACGTATC TERM 759 710185 - 710171 - f 88 -11.4 -3.54183 | opp_overlap 710171, overlap 710170 GTTGACGATAAAAAC GGGGCT TTA AGCCCC TTTTTTGTACGTATC TERM 760 710636 - 710619 - f 79 -9.9 -3.6215 | TTAAGTTATTCGAAA TTGCCTC TCAC GAGGCAA TCAAAAAATTACTTA TERM 761 712534 - 712512 - f 73 -2.1 -5.27477 | ACTTCAAGTAAAAAA TTCTAATTT TGGCG AAAGTAGAA ACCATTAGTTACGAT TERM 762 713098 - 713086 - f 85 -9.1 -4.2354 | GAAAGGCGAAAAGAA CCCCT GTG AGGGG AGTGAAATAGAACCT TERM 763 714401 - 714390 - f 72 -4.4 -4.7254 | ACTGTTTATCAAAAA CACA GTAC TGTG CAAACTCGCAAGAGG TERM 764 715844 - 715826 - f 89 -10.3 -4.19953 | opp_overlap 715826 TATTTAAGTCGAAAA GCCACCT GCATA AGGTGGC TTTTTTGCGTTTGGG TERM 765 715826 - 715844 + F 100 -10.3 -5.22039 | opp_overlap 715826 TATTTAAGTCGAAAA GCCACCT GCATA AGGTGGC TTTTTTGCGTTTGGG TERM 766 716181 - 716160 - f 86 -10.1 -4.0174 | opp_overlap 716160 AAGAGAATCGATAAA GCCCGTTGC TAAC GCAATGGGC TTTTTAGTATAAGCG TERM 767 716160 - 716181 + F 100 -12.3 -4.8048 | opp_overlap 716160 AAGAGAATCGATAAA GCCCGTTGC TAAC GCAATGGGC TTTTTAGTATAAGCG Shal_0591 716675 - 717793 + | choloylglycine hydrolase TERM 768 717816 - 717851 + F 93 -11.2 -4.29829 | opp_overlap 717820 717823, overlap 717817 717820 GCTTGTCCCCACTTG ATAAGAAGCCCTGACA TAAA TGCCAGGGCTTCTTGG TTTCTTGCTAATTAT TERM 769 717817 - 717850 + F 100 -14.7 -3.16813 | opp_overlap 717820 717823, overlap 717816 717820 CTTGTCCCCACTTGA TAAGAAGCCCTGACA TAAA TGCCAGGGCTTCTTG GTTTCTTGCTAATTA TERM 770 717847 - 717820 - f 100 -16.4 -3.32844 | opp_overlap 717817 717816 717820, overlap 717823 GTCCCCACTTGATAA GAAGCCCTGACA TAAA TGCCAGGGCTTC TTGGTTTCTTGCTAA TERM 771 717820 - 717847 + F 100 -14.2 -3.70925 | opp_overlap 717820 717823, overlap 717817 717816 GTCCCCACTTGATAA GAAGCCCTGACA TAAA TGCCAGGGCTTC TTGGTTTCTTGCTAA TERM 772 717844 - 717823 - f 93 -12.3 -3.80733 | opp_overlap 717820 717817 717816, overlap 717820 CCCACTTGATAAGAA GCCCTGACA TAAA TGCCAGGGC TTCTTGGTTTCTTGC TERM 773 718497 - 718515 + G 70 -8.8 -3.45768 | overlap 718511 CTATGTGTAGCTGGT GCTGGGCT TAT AGGCCAGC TTGGTTGGTGTTACA Shal_0592 718448 - 719074 + | DSBA oxidoreductase Shal_0593 719413 - 719078 - | hypothetical protein Shal_0594 720241 - 719579 - | short-chain dehydrogenase/reductase SDR Shal_0595 720743 - 720297 - | acetyl-CoA carboxylase, biotin carboxyl carrier protein Shal_0596 721208 - 720753 - | 3-dehydroquinate dehydratase, type II Shal_0597 721780 - 721358 - | hypothetical protein Shal_0598 721963 - 722334 + | hypothetical protein Shal_0599 722408 - 722584 + | hypothetical protein TERM 774 722625 - 722663 + F 90 -11.2 -3.82083 | TTAAAATGAGAGCGA GTTCACTAAGAGTGAGAT AAT AGCTTGTTCTTAGTGAAC TTTACGTTATGATGC Shal_0600 722773 - 723177 + | hypothetical protein Shal_0601 723465 - 724784 + | outer membrane efflux family protein, putative Shal_0602 724795 - 726207 + | RND family efflux transporter MFP subunit Shal_0603 726220 - 729444 + | CzcA family heavy metal efflux protein TERM 775 729455 - 729478 + F 84 -10.2 -3.93237 | overlap 729456 AGTAATGCTTGTCTG TCCGCGGCTC CATT GAGCCGTGGC TTATTCATTCTTTAC TERM 776 729456 - 729477 + F 93 -13.7 -2.94858 | overlap 729455 GTAATGCTTGTCTGT CCGCGGCTC CATT GAGCCGTGG CTTATTCATTCTTTA TERM 777 729687 - 729708 + F 93 -10.1 -4.7373 | overlap 729688 CAGGCTTATTTAGTA CGCGGAGCA GGAG TGCTCCGCA TTTTTCGTGCACTGA TERM 778 729688 - 729707 + F 95 -13.6 -3.43756 | overlap 729687 AGGCTTATTTAGTAC GCGGAGCA GGAG TGCTCCGC ATTTTTCGTGCACTG TERM 779 730411 - 730427 + G 70 -2.1 -5.06414 | opp_overlap 730400 730411, overlap 730413 GCTAGCTGCACAAGA TGCGCGC GTT GCACGAA TTTTTGTTAGCCCAG Shal_0604 729845 - 730741 + | penicillin-insensitive murein endopeptidase TERM 780 730820 - 730838 + T 81 -7.3 -4.59489 | opp_overlap 730816 730820 TATTGAGAGTACAAA GCGCCCC GTGTA GGTGCGC TTTATTGTTTGCCTT TERM 781 730838 - 730820 - T 73 -7.3 -4.02334 | opp_overlap 730820, overlap 730816 TATTGAGAGTACAAA GCGCCCC GTGTA GGTGCGC TTTATTGTTTGCCTT Shal_0605 731399 - 730938 - | hypothetical protein TERM 782 732121 - 732131 + G 76 -8.2 -4.05788 | overlap 732117 GGCTAGGCGGGCAGG CGCC ACT GGCG TTTGGTTTAGCGACA TERM 783 732706 - 732696 - g 71 -6.8 -4.13246 | overlap 732700 GATGTTATAGATAAA GGCA CTC TGCC ACAGCGGTTAGAGAA Shal_0606 731667 - 732728 + | hypothetical protein TERM 784 733291 - 733303 + G 73 -7.7 -4.04206 | TTTATCAGGTTAATC CCGAA CTG TTCGG TTTATATGAAAATGA Shal_0607 732891 - 733484 + | ATP-dependent protease La Shal_0608 733543 - 734481 + | pseudouridine synthase Shal_0609 736604 - 734718 - | hypothetical protein Shal_0610 736706 - 737641 + | dTDP-4-dehydrorhamnose reductase Shal_0611 737694 - 738998 + | histidine kinase Shal_0612 738991 - 739545 + | two component Fis family transcriptional regulator Shal_0613 740855 - 739707 - | sulphate transporter TERM 785 740732 - 740720 - G 93 -9.1 -4.89393 | CAAACCCCATAAAAA TCCCC TGA GGGGA AAAATGGTTTAGGGC TERM 786 741156 - 741127 - R 95 -11.5 -4.72272 | gap 1, opp_overlap 741148, overlap 741128 741144 GGTGGGCATTAAAAA GCGTCAGCC-TGCT AAG AGCATGGCTGACGA ATAGCCTTGCTAAGG TERM 787 741155 - 741128 - R 100 -15 -3.43042 | gap 1, opp_overlap 741148, overlap 741127 741144 GTGGGCATTAAAAAG CGTCAGCC-TGCT AAG AGCATGGCTGACG AATAGCCTTGCTAAG TERM 788 741187 - 741158 - R 79 -10.9 -3.1505 | opp_overlap 741148 741157 741160, overlap 741144 AGCATGGCTGACGAA TAGCCTTGCTA AGGAGAGG TAGCAAGGCTA GTTGGTGGGATGGCT Shal_0614 742651 - 741254 - | cytochrome c, putative TERM 789 742665 - 742686 + r 80 -11.6 -2.9176 | ATAAATATGCTCCAT CTCCTCGG CGTTAA CCGAGGAG TATCTGAGTGGCGTT Shal_0615 744412 - 742700 - | hypothetical protein Shal_0616 744914 - 744588 - | cytochrome c family protein TERM 790 745286 - 745260 - R 100 -21 -4.9138 | opp_overlap 745260 ATTAGGTAAACAAAA GGTCCCTTCAGC ATC GCTGAAGGGACC TTAAATGAACAGATG TERM 791 745260 - 745286 + r 100 -21 -3.05596 | opp_overlap 745260 ATTAGGTAAACAAAA GGTCCCTTCAGC ATC GCTGAAGGGACC TTAAATGAACAGATG Shal_0617 746044 - 745325 - | short-chain dehydrogenase/reductase SDR Shal_0618 746188 - 747102 + | LysR family transcriptional regulator Shal_0619 747312 - 748505 + | putative plasmid transfer protein Shal_0620 749242 - 748511 - | hypothetical protein TERM 792 748566 - 748597 + g 77 -8.8 -3.85698 | opp_overlap 748572 748573, overlap 748573 ACAGCGCTACAGCCA CATAAAGCCAGAGT GAAT GCTCTGGTTTTTTG TTTGTCGACGCGGCC TERM 793 748573 - 748590 + g 100 -7.7 -5.72622 | opp_overlap 748573 748572, overlap 748566 TACAGCCACATAAAG CCAGAGT GAAT GCTCTGG TTTTTTGTTTGTCGA TERM 794 749390 - 749360 - R 100 -21.4 -4.62783 | opp_overlap 749367 TATTTAGGCCAAAAA CAGATAAGGACTGC TAA GCAGTCCTTATCTG GAGATCATGTTTACT TERM 795 749367 - 749383 + r 90 -12.3 -3.49653 | opp_overlap 749360 GCCAAAAACAGATAA GGACTGC TAA GCAGTCC TTATCTGGAGATCAT Shal_0621 749735 - 749421 - | transcriptional repressor protein MetJ TERM 796 749648 - 749682 + g 82 -7.4 -4.66953 | gap 1, opp_overlap 749648 749659 TAAGTACTTTCAAAG GAATGGACACAGTGA TTTTTT TCACT-TGTTCATTC TTTTTGCCGTGTTCA Shal_0622 749947 - 751107 + | O-succinylhomoserine (thiol)-lyase TERM 797 752872 - 752897 + G 73 -11.1 -2.55722 | overlap 752869 CGTTATAACGCCAGT TGCGGTGCCGG TCTA CCGGTACAGCA TGCATTGAATGATCT TERM 798 753084 - 753097 + G 72 -8.1 -3.82824 | opp_overlap 753083, overlap 753090 ATCGGGTCGAGACAT GCAGC GTAA GCTGC TTATTCTGGCTCGTG Shal_0623 751123 - 753516 + | bifunctional aspartate kinase II/homoserine dehydrogenase II TERM 799 753540 - 753557 + F 100 -11.3 -5.79595 | opp_overlap 753540 TTAATCAATTGTAAA GGGACTC ATTT GAGTCCC TTTTTTGTTTTCAGC TERM 800 753557 - 753540 - f 88 -11.3 -3.69434 | opp_overlap 753540 TTAATCAATTGTAAA GGGACTC ATTT GAGTCCC TTTTTTGTTTTCAGC Shal_0624 753742 - 754632 + | 5,10-methylenetetrahydrofolate reductase Shal_0625 754790 - 755176 + | glutathione-dependent formaldehyde-activating GFA Shal_0626 755177 - 755440 + | hypothetical protein TERM 801 755530 - 755547 + G 90 -9.9 -4.52349 | CCGCGCGCTCAATGC TCCGAGT TTAA ACTCGGA TTTATCTTTATTTCT Shal_0627 755497 - 756474 + | hypothetical protein TERM 802 756493 - 756513 + T 93 -9 -5.252 | opp_overlap 756484 756493 GCAAGACATGAATAA GCCATCCT CTAAT AGGGTGGC TTTTTTATGCGCCTA TERM 803 756805 - 756830 + T 84 -10.5 -3.92694 | opp_overlap 756810, overlap 756810 ATAAGACAGAAAACA AAAAAGGAGCC GAAT GGCTCCTTTTC TTTGGTCTAATTTTG TERM 804 756825 - 756810 - T 100 -10.4 -5.8901 | opp_overlap 756805 756810 ACAGAAAACAAAAAA GGAGCC GAAT GGCTCC TTTTCTTTGGTCTAA TERM 805 756810 - 756825 + T 93 -10.4 -4.97158 | opp_overlap 756810, overlap 756805 ACAGAAAACAAAAAA GGAGCC GAAT GGCTCC TTTTCTTTGGTCTAA TERM 806 756835 - 756873 + T 88 -11.3 -3.65603 | gap 1 GGCTCCTTTTCTTTG GTCTAATTTTGTTGGAAC AGAG GTTCCAAC-AACTTAGAC TTATTCAGCGTCTTT Shal_0628 758751 - 756874 - | DEAD/DEAH box helicase domain-containing protein TERM 807 757428 - 757461 + g 85 -6.8 -5.00765 | overlap 757430 GGCTATCACGTTGAC GCTCGTTCATTGTA TGTAGT TGCAATGGACGATC TTTTTGTACTTGCTT TERM 808 757430 - 757459 + g 73 -8 -4.11322 | overlap 757428 CTATCACGTTGACGC TCGTTCATTGTA TGTAGT TGCAATGGACGA TCTTTTTGTACTTGC Shal_0629 759947 - 758988 - | peptidase M28 Shal_0630 760308 - 760042 - | hypothetical protein TERM 809 760319 - 760287 - G 73 -10 -3.33315 | gap 1, opp_overlap 760291 760294 CGAATACGGCGATAA GCAGCAAGCCTAGCA TCAT CACTAGGCTTG-TGC TTAAGAAGAGGTTTC Shal_0631 763205 - 760362 - | excinuclease ABC, A subunit TERM 810 764236 - 764251 + G 75 -3.2 -5.15167 | GATGCTCTATTTCCC TGCCTT TATG GGGGCA TTTTTCTTGATGGTG Shal_0632 763472 - 764839 + | major facilitator transporter TERM 811 765240 - 765225 - g 86 -9 -4.41494 | TAGCCGTAACCAAAA TGCTGG TGCA CCAGCA CAAGGTGGTAACTCA Shal_0633 764872 - 765543 + | single-strand binding protein TERM 812 765593 - 765610 + T 100 -7.7 -5.69262 | opp_overlap 765593 TATAAGTAACCTAAA CCCAGTC ATTT GATTGGG TTTTTCTTTTTCTGA TERM 813 765769 - 765717 - T 73 -8.6 -3.62478 | opp_overlap 765723, overlap 765719 765757 GAAGCAACGGTTAAA GAGGTACTTGAATTCTATAGTAAC TTTTC GTTCCGATAGACTCCAAGTACCTT GAGAAATTAATTAAA TERM 814 765767 - 765719 - T 85 -11.2 -3.38581 | opp_overlap 765723, overlap 765717 765757 AGCAACGGTTAAAGA GGTACTTGAATTCTATAGTAAC TTTTC GTTCCGATAGACTCCAAGTACC TTGAGAAATTAATTA Shal_0634 767454 - 765787 - | putative sigma54 specific transcriptional regulator TERM 815 767062 - 767052 - G 75 -3.2 -5.26316 | TCAGGTTAGAAAAAA CCTC ATC GAGA TTAGATCCATTCTTC Shal_0635 767916 - 769103 + | hypothetical protein TERM 816 769112 - 769092 - f 75 -2.5 -5.32882 | opp_overlap 769093, overlap 769093 GATGATGACAAAAAA CGAGTGAAA TAA CCTCACTCT AAGTTCTTCTGACTC TERM 817 769149 - 769165 + F 93 -13.7 -2.99204 | opp_overlap 769146 769143, overlap 769144 CAAGCAAGAGTATCG GGGGCAG GTT CTGCCCC TCTATCAGTTTCGTT TERM 818 769745 - 769727 - g 74 -6 -4.59773 | overlap 769730 GTTTAGTGCTAAAAA CAGCCA ACGAAAA TGGCTG GAAAGTTATTCAAGA Shal_0636 769189 - 770403 + | diaminopropionate ammonia-lyase TERM 819 771619 - 771607 - g 72 -9.1 -3.53012 | TTCGGTCCTGGTAAA GAGCC AGA GGCTC ACGCACCAAACGAGA Shal_0637 770506 - 771717 + | peptidase TERM 820 771725 - 771759 + F 74 -9.3 -3.55815 | opp_overlap 771724 771721, overlap 771726 771728 AGAAGTAATAAGACT GCACCCTGAGGGC CAACTCCCA GCCCTTAGGGTGA TTTCCACCACTCTTT TERM 821 771726 - 771758 + F 83 -12.8 -2.73007 | opp_overlap 771724 771721, overlap 771725 771728 GAAGTAATAAGACTG CACCCTGAGGGC CAACTCCCA GCCCTTAGGGTG ATTTCCACCACTCTT TERM 822 771728 - 771756 + F 71 -9.6 -2.90813 | opp_overlap 771724 771721, overlap 771726 771725 AGTAATAAGACTGCA CCCTGAGGGC CAACTCCCA GCCCTTAGGG TGATTTCCACCACTC Shal_0638 771917 - 773317 + | dihydropyrimidinase Shal_0639 773399 - 774328 + | carbamate kinase TERM 823 774341 - 774366 + T 73 -8.3 -3.66874 | opp_overlap 774340 774341 774338, overlap 774342 TAAGCTAACCAACAG CGCTAGCATCT GTAA GGATGCTAGCC TTTAAATGAAGTTAG TERM 824 774342 - 774365 + T 81 -11.8 -2.79803 | opp_overlap 774340 774341 774338, overlap 774341 AAGCTAACCAACAGC GCTAGCATCT GTAA GGATGCTAGC CTTTAAATGAAGTTA TERM 825 775076 - 775116 + T 87 -8.4 -4.65747 | opp_overlap 775082, overlap 775082 775109 AGAATGTCAGCCACT AAAAAAGCCAGCTCAGTT TAATC AACTGAACTGGCTTTATC TTTTCTTAAAGCTTA TERM 826 775110 - 775082 - T 100 -14 -5.1675 | opp_overlap 775082 775076 775109 TCAGCCACTAAAAAA GCCAGCTCAGTT TAATC AACTGAACTGGC TTTATCTTTTCTTAA TERM 827 775082 - 775110 + T 95 -11.8 -4.56159 | opp_overlap 775082, overlap 775076 775109 TCAGCCACTAAAAAA GCCAGCTCAGTT TAATC AACTGAACTGGC TTTATCTTTTCTTAA Shal_0640 777910 - 775172 - | putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase TERM 828 775446 - 775483 + g 76 -7.8 -4.24204 | gap 1 GCACGCATCATCATA GGTGGGCCGATGGT-GA CGACT TCTGCTATCGGTTCACC TTTTCCATCTCGATG TERM 829 775705 - 775760 + g 71 -3.9 -4.73613 | gap 2, overlap 775708 775709 775710 ACTCTAAGTGAGCTC GCATGATGGGGTGTACTGCGGGTAGGC CTAC GCC-ACCTGCAGCAAACACCA-CTCGC TTTTCTTCATGCTGC TERM 830 776839 - 776819 - G 72 -6.7 -4.24342 | overlap 776822 GCCTGTACCAACAAA CACGCGGGC AAA GCCTGCACG CTTAAGATCGGCAAA Shal_0641 782844 - 777913 - | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein TERM 831 778058 - 778079 + g 80 -5.9 -5.05782 | overlap 778059 GCAACCACTTTAGCT TCACCGTTA CAGA TAATGGTGG TTTTTTCGAATAGCT TERM 832 781601 - 781615 + g 70 -10 -3.07013 | overlap 781603 781613 CGGGCCTTCATTAGT GAGCGT GAC ACGCTC TCTGTTAAGCGAGTC TERM 833 783045 - 783035 - H 80 -8.2 -4.38712 | TTGATCTGCATAAAA CGCC GTT GGCG CTAATAAAAAAGACG Shal_0642 784187 - 784576 + | hypothetical protein Shal_0643 784696 - 784998 + | hypothetical protein Shal_0644 785126 - 785332 + | hypothetical protein TERM 834 785363 - 785350 - T 76 -2.4 -5.46276 | opp_overlap 785350 785353, overlap 785353 AATACACATAAAAAA TGAC TATGGC GTCA ATAGTTTATTTGCAC TERM 835 785433 - 785444 + T 76 -2.2 -5.37593 | GATAGAAAAAGCTAG GGCA ACCA TGTC TTTTTTGATTTAGAC TERM 836 785541 - 785575 + T 95 -11.5 -4.7373 | opp_overlap 785543, overlap 785542 785543 785545 TTAAGCTATAAAAAA AAGATGAGCCAGAAG TTTAT CTTCTGGCTCATCGG TTTTTGCTGGAATGC TERM 837 785542 - 785574 + T 100 -15 -3.43756 | opp_overlap 785543, overlap 785541 785543 785545 TAAGCTATAAAAAAA AGATGAGCCAGAAG TTTAT CTTCTGGCTCATCG GTTTTTGCTGGAATG TERM 838 785543 - 785573 + T 100 -18.5 -2.65772 | opp_overlap 785543, overlap 785542 785541 785545 AAGCTATAAAAAAAA GATGAGCCAGAAG TTTAT CTTCTGGCTCATC GGTTTTTGCTGGAAT TERM 839 785573 - 785543 - T 100 -18.5 -5.97575 | opp_overlap 785543 785542 785541 785545 AAGCTATAAAAAAAA GATGAGCCAGAAG TTTAT CTTCTGGCTCATC GGTTTTTGCTGGAAT TERM 840 785545 - 785571 + T 95 -15.3 -2.86601 | opp_overlap 785543, overlap 785543 785542 785541 GCTATAAAAAAAAGA TGAGCCAGAAG TTTAT CTTCTGGCTCA TCGGTTTTTGCTGGA Shal_0645 787207 - 785615 - | hypothetical protein Shal_0646 788333 - 787308 - | hypothetical protein Shal_0647 788359 - 788955 + | hypotehtical YgfJ TERM 841 789036 - 789011 - f 76 -9.2 -3.77196 | opp_overlap 789011 GCACCACTTATCAAA TTGATACCAA TTTATC TTGGTATCAA TCATCTAAGCTCTCA TERM 842 790953 - 790942 - g 80 -5.8 -4.99056 | GAATATAAGCAAAAA TGGC ATAA GCCA AGTCTTGAAAATAAG Shal_0648 789331 - 792435 + | putative selenate reductase subunit YgfK TERM 843 793038 - 793051 + G 76 -8.1 -4.13767 | GTTGAAGCCCATATT GGTGC CCAT GCACC TTTTACGGTAACAAA Shal_0649 792447 - 793775 + | putative chlorohydrolase/aminohydrolase Shal_0650 794613 - 795848 + | putative endoribonuclease L-PSP TERM 844 795884 - 795908 + F 76 -4.4 -5.10656 | gap 1, opp_overlap 795884 GATTGTTAAAATTAA GGCTATC-TGT CTCA ATATGATAGCC TTTTATTATTTTGAT TERM 845 796389 - 796401 + G 71 -3.3 -4.82128 | TTACACTGCCCAAGC TCCCC TCC GGGTA TTTTGTCTTTGGTGC Shal_0651 796238 - 798439 + | xanthine dehydrogenase TERM 846 798730 - 798705 - g 79 -10.5 -3.59979 | opp_overlap 798704 TTGCTCGAGGCTAAA GGGGTGCAA TGCGGCTT TTGCACCCC CTCTATGGTACTGGC Shal_0652 798423 - 798902 + | 2Fe-2S iron-sulfur cluster binding domain-containing protein Shal_0653 798899 - 799741 + | molybdopterin dehydrogenase FAD-binding TERM 847 800364 - 800346 - g 73 -7.4 -4.18018 | opp_overlap 800348, overlap 800348 GTTGGCGACCTAAAA TATGGACG CAC CGTCCATT CATTGACCCAAGCCT TERM 848 800362 - 800348 - g 79 -10 -3.69216 | opp_overlap 800348, overlap 800346 TGGCGACCTAAAATA TGGACG CAC CGTCCA TTCATTGACCCAAGC TERM 849 800348 - 800362 + G 73 -10 -3.33696 | opp_overlap 800348 800346 TGGCGACCTAAAATA TGGACG CAC CGTCCA TTCATTGACCCAAGC Shal_0654 799854 - 800786 + | aspartate carbamoyltransferase Shal_0655 800786 - 801244 + | aspartate carbamoyltransferase regulatory subunit TERM 850 801269 - 801293 + F 81 -5.8 -5.10656 | opp_overlap 801269 AAATCTTATCCTAAA GGCTATCA GTCTCAATA TGATAGCC TTTTCTTATTTTGAT Shal_0656 801587 - 802381 + | putative selenate reductase subunit YgfM TERM 851 802512 - 802528 + G 78 -5.1 -4.93877 | TGATGGTTTTGGCTT TAGTGGC TCT GACACTA TTTTGTTTAATGGCC TERM 852 804365 - 804352 - g 79 -8.1 -4.22009 | overlap 804348 ATTATTCAACAGAAA TCGGG GATC CCCGA TATCGACCAAGCGAA Shal_0657 802384 - 805254 + | putative selenate reductase subunit YgfN TERM 853 805264 - 805248 - f 79 -9.5 -3.62597 | GGCAGGGCTCAACAA GCTGTAA TTC TTACAGC AAACCAGTTTCAAAC TERM 854 806375 - 806348 - g 72 -4.8 -4.62471 | gap 1, opp_overlap 806356 GCTAACGGGTAAAAA GCTCTC-CAGAGG CAT CCTCTGTGATGGC GTGGGTAGCGCCTTA Shal_0658 805530 - 806936 + | uracil-xanthine permease TERM 855 807001 - 806977 - f 72 -8.7 -3.5556 | CAAACGCTAAATCAA TATGAGTGATT TTA AATCGCTCATA GCTCAATAAGTAAAA Shal_0659 807095 - 808411 + | guanine deaminase Shal_0660 808636 - 810012 + | xanthine/uracil/vitamin C permease Shal_0661 810060 - 810812 + | hypothetical protein TERM 856 810877 - 810842 - f 89 -9.8 -4.23213 | gap 1, opp_overlap 810847, overlap 810847 810850 TTTAGACTTAATAAA GTAAATGA-CCTCCGGC AAA GCCGGAGGCTCATTTGA TGAGGCCCTCAAAGG TERM 857 810872 - 810847 - f 100 -14.1 -4.21744 | gap 1, opp_overlap 810847, overlap 810842 810850 ACTTAATAAAGTAAA TGA-CCTCCGGC AAA GCCGGAGGCTCA TTTGATGAGGCCCTC TERM 858 810847 - 810872 + F 100 -14.1 -3.72893 | gap 1, opp_overlap 810842 810847 810850 ACTTAATAAAGTAAA TGA-CCTCCGGC AAA GCCGGAGGCTCA TTTGATGAGGCCCTC TERM 859 810868 - 810850 - f 100 -16 -3.10724 | opp_overlap 810847, overlap 810847 810842 TAATAAAGTAAATGA CCTCCGGC AAA GCCGGAGG CTCATTTGATGAGGC TERM 860 814324 - 814314 - g 74 -6.8 -4.2558 | overlap 814315 CACGGGCTACCAAAA GGTC GAC GACC CTGCGGTGCAGCGAC Shal_0662 811033 - 815406 + | formate dehydrogenase, alpha subunit TERM 861 815432 - 815465 + F 73 -9.7 -3.25539 | opp_overlap 815431, overlap 815431 815433 AGTACGGCATAGGAC TTAGACTGGCAGACT TGAG ACTCTGTCAGTCTAG TGTTCATTAACCTTA TERM 862 815433 - 815464 + F 76 -11 -2.54841 | opp_overlap 815431, overlap 815432 815431 GTACGGCATAGGACT TAGACTGGCAGACT TGAG ACTCTGTCAGTCTA GTGTTCATTAACCTT TERM 863 815784 - 815799 + F 93 -8.2 -5.37345 | opp_overlap 815784 AGTCGGTAATACTAA GCGGCC CTAT GGTCGC TTTTTTATGCTTGAA Shal_0663 816348 - 816764 + | hypothetical protein TERM 864 816796 - 816775 - T 93 -8.7 -5.20534 | opp_overlap 816778, overlap 816778 ATTAATCAATAAAAA TAACAGCGC CTAG GCGCTGTTT TTTTGTTTCTTTTGA TERM 865 816778 - 816793 + T 100 -10.4 -6.11392 | opp_overlap 816778 816775 AATCAATAAAAATAA CAGCGC CTAG GCGCTG TTTTTTTGTTTCTTT TERM 866 816793 - 816778 - T 93 -10.4 -4.67357 | opp_overlap 816778, overlap 816775 AATCAATAAAAATAA CAGCGC CTAG GCGCTG TTTTTTTGTTTCTTT Shal_0664 817843 - 816812 - | aldose 1-epimerase TERM 867 816883 - 816895 + g 70 -9.1 -3.3782 | opp_overlap 816879 CTATCAAGGCATCAC CCGCA ATA TGCGG TTGGTTAGGTGCATC Shal_0665 819009 - 817855 - | galactokinase Shal_0666 820766 - 819345 - | SSS family solute/sodium (Na+) symporter TERM 868 820666 - 820684 + g 73 -7.4 -4.10453 | AAGTAATCTTTGCTA TCACTCGT ATT GCGGGTGA TTTTGCGACACTTTA Shal_0667 824093 - 820860 - | Beta-galactosidase TERM 869 822697 - 822715 + g 74 -11 -2.90571 | overlap 822712 TCAACACGCGCCTTG TGGGCTGG TAG CCAGCTCA TCTCGTTACCCAGTT TERM 870 823030 - 823046 + g 79 -8 -4.44548 | AAGCCTATCTGTTGA CTGCTG GCTTG CAGCAG TTTTCCTTGGCTGTC Shal_0668 825091 - 824138 - | hypothetical protein TERM 871 825025 - 825002 - G 100 -13.9 -3.89212 | GATCCAGATATCAAA CCCTGCAGC TAGGGC GCTGCAGGG GACTAGAAGTAGGGC Shal_0669 826953 - 825187 - | sodium/hydrogen exchanger TERM 872 827131 - 827095 - R 100 -21.1 -3.57792 | opp_overlap 827100, overlap 827097 827100 CTAGGGACGGTTAAA GAGAAGCCCGGTTTATC ACT GATAAACCGGGCTTCTA GGGATAAGCTTAGAC TERM 873 827129 - 827097 - R 100 -23.7 -3.36694 | opp_overlap 827100, overlap 827095 827100 AGGGACGGTTAAAGA GAAGCCCGGTTTATC ACT GATAAACCGGGCTTC TAGGGATAAGCTTAG TERM 874 827100 - 827126 + r 100 -19.6 -3.31263 | opp_overlap 827100 827097 827095 GACGGTTAAAGAGAA GCCCGGTTTATC ACT GATAAACCGGGC TTCTAGGGATAAGCT TERM 875 827126 - 827100 - R 100 -19.6 -3.82202 | opp_overlap 827100, overlap 827097 827095 GACGGTTAAAGAGAA GCCCGGTTTATC ACT GATAAACCGGGC TTCTAGGGATAAGCT Shal_0670 828986 - 827160 - | thiol:disulfide interchange protein precursor Shal_0671 829306 - 828983 - | CutA1 divalent ion tolerance protein TERM 876 829449 - 829480 + H 71 -3.8 -4.87893 | gap 1, opp_overlap 829453, overlap 829450 829451 829452 TAACTTAGGCTTGCA TTA-AGGCATCGCTA AAA TAGTGATGCCAGTAG TTTTTGCTTACAATT TERM 877 829475 - 829453 - H 79 -10.6 -3.14564 | opp_overlap 829452 829451 829450 829449 TTAGGCTTGCATTAA GGCATCGCTA AAA TAGTGATGCC AGTAGTTTTTGCTTA Shal_0672 829645 - 830280 + | FxsA cytoplasmic membrane protein Shal_0673 832127 - 830283 - | serine/threonine protein kinase Shal_0674 832344 - 832685 + | hypothetical protein TERM 878 832924 - 832914 - g 80 -6.8 -4.72272 | TTTTGGCATGAAAAA TGGG ATG CCCA GCAGATAGGCTTTCA Shal_0675 832887 - 833546 + | thiopurine S-methyltransferase TERM 879 833811 - 833780 - T 78 -11 -2.92668 | opp_overlap 833781 833788, overlap 833788 CATCATCTAACCAGA TCAAAAAAGCGACC CTAA GGTCGCTTTTTTAT GGCTTAAAATCGTTA TERM 880 833781 - 833810 + T 83 -12.3 -2.54371 | opp_overlap 833780 833788, overlap 833788 ATCATCTAACCAGAT CAAAAAAGCGACC CTAA GGTCGCTTTTTTA TGGCTTAAAATCGTT TERM 881 833803 - 833788 - T 100 -10.4 -5.2422 | opp_overlap 833788 833781, overlap 833780 AACCAGATCAAAAAA GCGACC CTAA GGTCGC TTTTTTATGGCTTAA TERM 882 833788 - 833803 + T 100 -10.4 -5.31456 | opp_overlap 833780 833788, overlap 833781 AACCAGATCAAAAAA GCGACC CTAA GGTCGC TTTTTTATGGCTTAA Shal_0676 834898 - 833849 - | porin TERM 883 834941 - 834955 + r 85 -5.8 -5.3104 | TATTCGTTTCTTATG GTTTAT TGC ATAAAC TTTTGTTTTTGCTAC TERM 884 835487 - 835472 - R 100 -10.4 -5.50313 | opp_overlap 835472 CACAAAATTAAAAAA GGCAGC TAGT GCTGCC TTTAAAGTCTATTTG TERM 885 835472 - 835487 + r 80 -10.4 -3.67954 | opp_overlap 835472 CACAAAATTAAAAAA GGCAGC TAGT GCTGCC TTTAAAGTCTATTTG Shal_0677 836595 - 835534 - | porin Shal_0678 836978 - 837799 + | UBA/THIF-type NAD/FAD binding protein TERM 886 837846 - 837862 + F 100 -13.7 -5.8901 | opp_overlap 837829 GCTCTGTATTGCAGA GGCGTCC ATA GGACGCC TTTTTTATTTTCTGT Shal_0679 837988 - 838605 + | hypothetical protein TERM 887 838675 - 838657 - T 100 -7.3 -5.72616 | opp_overlap 838658, overlap 838658 ATTTAGACAAAAAAA TGGGGGC ACATA GCCCCCT GCATTAGTATTAATA TERM 888 838658 - 838674 + T 76 -10.8 -2.6078 | opp_overlap 838658 838657 TTTAGACAAAAAAAT GGGGGC ACATA GCCCCC TGCATTAGTATTAAT TERM 889 838674 - 838658 - T 88 -10.8 -4.01943 | opp_overlap 838658, overlap 838657 TTTAGACAAAAAAAT GGGGGC ACATA GCCCCC TGCATTAGTATTAAT Shal_0680 838832 - 838698 - | hypothetical protein TERM 890 839198 - 839214 + r 77 -9.5 -3.53444 | opp_overlap 839196 839210 GAATTGGTAGACACG TCGGATT CAA AATCCGA TTTCGAAAGAAGTGA TERM 891 839271 - 839286 + r 95 -6.1 -5.65177 | opp_overlap 839271 TTATCAACAAAGCAA CCTGC CATCGA GCAGG TTTTTTTATGCCTGT Shal_0681 840051 - 839440 - | AraC family transcriptional regulator TERM 892 840773 - 840750 - R 93 -10.3 -4.90778 | opp_overlap 840746 840750 TCGACCCAAATAAAA GGCCACGAT ATAGAA ATCGCGGCC TTCATTTGATAAGTG Shal_0682 841269 - 840811 - | aspartate carbamoyltransferase regulatory subunit Shal_0683 842201 - 841269 - | aspartate carbamoyltransferase TERM 893 841867 - 841848 - G 72 -6.4 -4.2828 | gap 1, opp_overlap 841861 841862, overlap 841849 841852 GGGTACCGATGAAAA CTCACTCGC AAG GCGAGCG-G CACCCTCTTGATTAT TERM 894 842260 - 842270 + r 76 -6.8 -4.3739 | ACTCGCTTCGTATAG CCGA GTG TCGG TTTTGTCACAAACTG Shal_0684 843673 - 842366 - | major facilitator transporter TERM 895 843081 - 843065 - G 85 -6.5 -5.10461 | opp_overlap 843065 843065, overlap 843047 843066 CGCAGCTAATAAAAA TGGGATG CGC CATCCCC ATTCATGCAATTGTG TERM 896 843080 - 843066 - G 75 -10 -3.65554 | opp_overlap 843065 843065, overlap 843047 843065 GCAGCTAATAAAAAT GGGATG CGC CATCCC CATTCATGCAATTGT TERM 897 843606 - 843580 - G 77 -10.3 -3.34227 | opp_overlap 843584, overlap 843584 CGACGAAATTACCAA TAAAGCAAGCT GTTGA AGCTCGCTTTA AAGTTGTCTGTTCAG TERM 898 843602 - 843584 - G 72 -6.7 -4.30833 | opp_overlap 843584, overlap 843580 GAAATTACCAATAAA GCAAGCT GTTGA AGCTCGC TTTAAAGTTGTCTGT Shal_0685 844643 - 843702 - | hypothetical protein TERM 899 844605 - 844626 + g 72 -3 -5.03145 | overlap 844606 AGCCCCGAAAGCACT GGCAAAAC CAACAT GTTTTGCA TTTTTTAAAAAGTTC TERM 900 845386 - 845335 - R 71 -3.8 -4.92757 | overlap 845336 845340 845345 845381 CTATTAACAATAAAA CTCAACCCAAGTCTTTGTAAGTTG AATT CAACTTACAAAGACTGAAGACTAC CCATCAGTAATCATA TERM 901 845381 - 845340 - R 100 -14.7 -3.48144 | overlap 845336 845335 845345 AACAATAAAACTCAA CCCAAGTCTTTGTAAGTTG AATT CAACTTACAAAGACTGAAG ACTACCCATCAGTAA TERM 902 845376 - 845345 - R 100 -17.6 -3.2352 | overlap 845340 845336 845335 TAAAACTCAACCCAA GTCTTTGTAAGTTG AATT CAACTTACAAAGAC TGAAGACTACCCATC Shal_0686 846643 - 845414 - | endoribonuclease L-PSP TERM 903 845555 - 845528 - G 100 -9.4 -5.03715 | gap 1, opp_overlap 845527, overlap 845530 ATCACTCTTAAAAAA TG-TGTTGTAAAC GTT GTTTACAACATCA ATATCTGCAATATTT TERM 904 845552 - 845530 - G 79 -12.2 -2.76422 | opp_overlap 845527, overlap 845528 CACTCTTAAAAAATG TGTTGTAAAC GTT GTTTACAACA TCAATATCTGCAATA TERM 905 846583 - 846567 - G 70 -2.2 -4.98255 | opp_overlap 846575, overlap 846568 TTGTAATGAGAAAAA GCGACA GTCTG TGTCGA TACAGCATTTTTTGG Shal_0687 847813 - 846809 - | ornithine carbamoyltransferase TERM 906 847700 - 847714 + g 74 -3.5 -5.05782 | TTTTTTTTGCTCAAT GCCAG CGTAC TTGGC TTTTTTAAGATCAAT TERM 907 847847 - 847871 + r 75 -10.1 -3.06796 | TATTGAGATTTTAAT TCCAGCAGA GAAATGG TCTGCTGGA TTAACTGAGATGAAA Shal_0688 848839 - 847898 - | carbamate kinase Shal_0689 850111 - 848891 - | arginine deiminase TERM 908 850373 - 850355 - R 93 -7.4 -5.38951 | opp_overlap 850355 AATTTACATAAAAAA GGCCTC AAATAAA GAGGCC TTCAGTTTCAATATC Shal_0690 851640 - 850408 - | non-specific serine/threonine protein kinase TERM 909 852416 - 852445 + r 76 -9.3 -3.70902 | opp_overlap 852421, overlap 852418 852421 CTGATTGCGTTGCTA AAGAAGCTAGGCA TGAT TGCCTAGCTGCTG TTTGACTATACCGAC TERM 910 852418 - 852443 + r 86 -11.9 -3.43773 | opp_overlap 852421, overlap 852416 852421 GATTGCGTTGCTAAA GAAGCTAGGCA TGAT TGCCTAGCTGC TGTTTGACTATACCG TERM 911 852440 - 852421 - R 91 -12.2 -3.90744 | opp_overlap 852418 852416 852421 TGCGTTGCTAAAGAA GCTAGGCA TGAT TGCCTAGC TGCTGTTTGACTATA TERM 912 852421 - 852440 + r 81 -12.2 -2.86838 | opp_overlap 852421, overlap 852418 852416 TGCGTTGCTAAAGAA GCTAGGCA TGAT TGCCTAGC TGCTGTTTGACTATA Shal_0691 852969 - 852451 - | hypothetical protein Shal_0692 855193 - 852974 - | putative oxidoreductase TERM 913 854912 - 854892 - G 78 -6.1 -4.57341 | opp_overlap 854892 AATTCGGGCGAAAAA TGACCACCA AAA TGGCCGTCA GTTATTAAATGCTGT Shal_0693 855864 - 855223 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shal_0694 856318 - 856584 + | hypothetical protein Shal_0695 857058 - 857441 + | hypothetical protein TERM 914 857451 - 857482 + T 70 -8.9 -3.17723 | opp_overlap 857451 857458, overlap 857458 TTATGAATCATCAAT TTAAAAAGGGCAT ACAATA ATGCCCTTTTTTA TTGCCTTAACGGTAG TERM 915 857475 - 857458 - T 81 -7 -4.7629 | opp_overlap 857451 857458, overlap 857451 TCATCAATTTAAAAA GGGCAT ACAATA ATGCCC TTTTTTATTGCCTTA TERM 916 857458 - 857475 + T 93 -7 -5.5074 | opp_overlap 857458 857451, overlap 857451 TCATCAATTTAAAAA GGGCAT ACAATA ATGCCC TTTTTTATTGCCTTA Shal_0696 858625 - 857501 - | peptidase M50 Shal_0697 860392 - 858728 - | hypothetical protein TERM 917 859149 - 859171 + g 71 -7.6 -3.83771 | TCTGTCTTTGTGTCT GCAGTCGCAC CTA GTGCTACAGC TTTGATACCTTTATT Shal_0698 861603 - 860578 - | rRNA (guanine-N(2)-)-methyltransferase TERM 918 861731 - 861712 - R 89 -7 -5.29782 | opp_overlap 861712 GATAGGTATAAAAAA GACCGCAG ATGA CAGCGGCC TTTCCTGATTTAAGT Shal_0699 863085 - 861775 - | alkaline phosphatase TERM 919 862077 - 862097 + g 82 -11.9 -3.38088 | overlap 862067 CGATGGCGATCGCTT GCTCTGCTA TGG TAGCAGGGC TTGCTTGAATACCTT Shal_0700 864053 - 863100 - | glutathione synthetase Shal_0701 864929 - 864198 - | hypothetical protein Shal_0702 865686 - 864943 - | deoxyribonuclease I TERM 920 865436 - 865446 + g 91 -8.2 -4.99972 | overlap 865408 865435 TGTTCCCACTCGATG CGCG CGG CGCG TTTTTCCTGTTTTCT Shal_0703 866427 - 865843 - | protein of unknown function DUF335 SprT Shal_0704 867903 - 866743 - | hypothetical protein Shal_0705 869026 - 868115 - | LysR family transcriptional regulator TERM 921 869798 - 869818 + G 72 -4.7 -4.58283 | overlap 869800 CCGCCGCAAACATCT TGCTATCGC TAC GTGATGGTA TTTTTAACACCATTC Shal_0706 869149 - 873702 + | carbamoyl-phosphate synthase L chain ATP-binding TERM 922 873790 - 873760 - T 70 -9.9 -2.65448 | opp_overlap 873766, overlap 873766 GGAAAGTTAATCAAC TAAAAATACCCAC GTAAT GTGGGTATTTTTT TGTACATGGAACTAC TERM 923 873766 - 873784 + T 100 -9.6 -5.64274 | opp_overlap 873760 873766 TTAATCAACTAAAAA TACCCACG TAA TGTGGGTA TTTTTTTGTACATGG TERM 924 873784 - 873766 - T 90 -8.9 -4.93547 | opp_overlap 873766, overlap 873760 TTAATCAACTAAAAA TACCCAC GTAAT GTGGGTA TTTTTTTGTACATGG Shal_0707 875096 - 873852 - | sodium/hydrogen exchanger Shal_0708 877790 - 875199 - | ATPase, P-type (transporting), HAD superfamily, subfamily IC TERM 925 876454 - 876418 - G 77 -10.2 -3.34043 | opp_overlap 876418 876427 GCGAGGACTCGATAA CCACGCTTAGCCATAG AGTGG CTTTGGCTAAGAATGG TTTGCCGCATCTCTT Shal_0709 878826 - 877924 - | LysR family transcriptional regulator TERM 926 878716 - 878745 + g 73 -10.1 -3.31915 | overlap 878715 TTCTAAGCGCTGGAT CATCTTGCTCAGT GTCG GCTGAGTAAGGTG TAATTTTTCTGCAGC TERM 927 879237 - 879223 - R 70 -2.8 -5.07652 | opp_overlap 879225, overlap 879225 TTGCTTAAAATAAAA GATGAC TTT GTCATA TTCCCTGCATTAGGC TERM 928 879329 - 879309 - R 70 -9 -3.17051 | opp_overlap 879309, overlap 879307 CCTCGATGAGTAATA CCTGCCAC TGAGC GTAGCAGG TGGATTGATAGTGAC Shal_0710 879683 - 879354 - | hypothetical protein TERM 929 879774 - 879790 + H 82 -6.5 -4.98616 | TCCTACTGAGGCTAG GCCACCT AAG AGGTAGC TTTTTCATGTTTTGA Shal_0711 879892 - 880776 + | hypothetical protein TERM 930 881122 - 881093 - T 100 -12.3 -4.67982 | opp_overlap 881099, overlap 881099 TCTGAGTGAATAAAA TAAAAACCACCTC AATT GAGGTGGTTTTTT AATGGTTTAAAGCTA TERM 931 881116 - 881099 - T 100 -11.3 -5.62288 | opp_overlap 881099, overlap 881093 TGAATAAAATAAAAA CCACCTC AATT GAGGTGG TTTTTTAATGGTTTA TERM 932 881099 - 881116 + T 100 -11.3 -5.243 | opp_overlap 881099 881093 TGAATAAAATAAAAA CCACCTC AATT GAGGTGG TTTTTTAATGGTTTA Shal_0712 881571 - 881146 - | nitrate reductase cytochrome c-type subunit (NapB) TERM 933 881312 - 881326 + g 80 -5.6 -5.07486 | opp_overlap 881314, overlap 881314 TTTGCTGGGCTATGA CAGCTG ATG CAGCCG TTTTTCTTCAGCGTG Shal_0713 882476 - 881568 - | quinol dehydrogenase membrane component Shal_0714 883207 - 882473 - | quinol dehydrogenase periplasmic component Shal_0715 885748 - 883268 - | nitrate reductase TERM 934 884085 - 884098 + g 72 -8.1 -3.79043 | CACAAGTCAGATTTA GCACC TTCT GGTGC TTTAACTTGCTGATG Shal_0716 886013 - 885738 - | NapD family protein TERM 935 885812 - 885825 + g 80 -9.5 -3.97368 | opp_overlap 885812 GACTGCTATTTAACA CGCCC TCTA GGGCG TTTATCGCTTCAACG TERM 936 885825 - 885812 - G 70 -9.5 -3.08996 | opp_overlap 885812 GACTGCTATTTAACA CGCCC TCTA GGGCG TTTATCGCTTCAACG Shal_0717 887474 - 886374 - | hypothetical protein TERM 937 886874 - 886884 + g 80 -6.8 -4.61231 | overlap 886867 AGTAACTCGCCACTG TGCC GCT GGCA TTTTTACGACTGTAG Shal_0718 889999 - 887471 - | hypothetical protein TERM 938 889828 - 889838 + g 77 -6.8 -4.45945 | opp_overlap 889827 TCGCCTCGGAGTAAC TGCG CAC CGCA TTTTCATTGGTGGCT Shal_0719 890660 - 889992 - | ABC transporter related TERM 939 890108 - 890132 + g 71 -3.6 -4.82154 | gap 1, opp_overlap 890108 890111, overlap 890111 TAGCGAGCAGAGTAA GCAGGGTCA TTACCTGT TGACCC-GC TTTTTCATCTAGGTT TERM 940 893146 - 893124 - g 74 -3.4 -5.0538 | overlap 893126 TGCTAGCGCAAAAAA GCTTCGAAAT TCA ATATCGAATC AAGCACCGAGACGGC Shal_0720 890984 - 896269 + | multi-sensor hybrid histidine kinase Shal_0721 896374 - 897393 + | response regulator receiver modulated metal dependent phosphohydrolase TERM 941 897440 - 897426 - T 95 -8.5 -5.38054 | opp_overlap 897421 897426 CGGGATAAACAAAAA GGCGC ATAAA GCGCC TTTTCTATTACGAAC TERM 942 897426 - 897440 + T 88 -8.5 -4.66537 | opp_overlap 897426, overlap 897421 CGGGATAAACAAAAA GGCGC ATAAA GCGCC TTTTCTATTACGAAC Shal_0722 898442 - 897471 - | glycine cleavage T protein (aminomethyl transferase) TERM 943 898577 - 898552 - R 100 -14.9 -4.65458 | opp_overlap 898552 TATATAAAGAACAAA GGCCGTATAAT GTGA ATTATACGGCC TTACTCATCGATTTA TERM 944 898552 - 898577 + r 100 -14.9 -3.23984 | opp_overlap 898552 TATATAAAGAACAAA GGCCGTATAAT GTGA ATTATACGGCC TTACTCATCGATTTA Shal_0723 899981 - 898752 - | D-3-phosphoglycerate dehydrogenase Shal_0724 900217 - 900852 + | hypothetical protein Shal_0725 901424 - 902650 + | Na+ dependent nucleoside transporter TERM 945 902725 - 902697 - f 100 -14.7 -4.34402 | opp_overlap 902696 902693 GTTTTTAGATGAAAA GTGCTTGCTTACA TAG CGCAAGCAAGCAC CTAAATTTTTTGAGG Shal_0726 902749 - 903459 + | purine nucleoside phosphorylase Shal_0727 903883 - 904320 + | thioesterase superfamily protein Shal_0728 904539 - 904793 + | hypothetical protein TERM 946 904828 - 904851 + F 81 -7.6 -4.59109 | gap 1, opp_overlap 904828 AGTACAGTTAACTGA GGAGG-AAATA ATC TATTTACCTCC TTTTTAACAAATGTA Shal_0729 905314 - 906780 + | catalase TERM 947 906836 - 906812 - T 100 -10 -5.45802 | opp_overlap 906812 GCCGGAAAAGAAAAA GCCTGTGGAG TTTAT CTTCACAGGC TTTTTACTTCTTGTT TERM 948 906812 - 906836 + T 100 -12.2 -5.03201 | opp_overlap 906812 GCCGGAAAAGAAAAA GCCTGTGGAG TTTAT CTTCACAGGC TTTTTACTTCTTGTT Shal_0730 907460 - 906906 - | hypothetical protein TERM 949 907578 - 907555 - H 89 -11.8 -3.53012 | opp_overlap 907554 907550 GTCTTGCTGGGCAAA CTCGATGTGC TGCT GCACATCAAG CTGCTGTATGCACCA TERM 950 907802 - 907820 + H 100 -13.2 -4.22652 | opp_overlap 907806 TTTGCAGCTATGTTA CCAACTCG TGC CGAGTTGG TTTTAACTGCTCTAG TERM 951 908172 - 908186 + G 71 -10 -3.21925 | GCTCTATCGCCATTG TTGCCG GAA CGGCAA TTGGTGGTGGCATGT Shal_0731 908138 - 909337 + | aromatic amino acid permease TERM 952 909463 - 909495 + F 95 -6.4 -5.54079 | gap 1, opp_overlap 909463 GCCACCTATGATAAA GTCGAGCACGAATAT GAAA ATATTGG-GCTCGGC TTTTTTGCTTTTTAC TERM 953 910626 - 910638 + G 73 -7.7 -4.08216 | TGCTAAAAACTTCAC CTCGA TGA TCGAG TTTTACGGCAAATCA Shal_0732 909643 - 911799 + | hypothetical protein TERM 954 911863 - 911840 - T 90 -11.1 -4.18018 | opp_overlap 911840, overlap 911822 CTTTTGGATGCAAAA GCCGAAACA TGAAAG TGTTTCGGC TTTTTTGATCTTTGG TERM 955 911840 - 911863 + T 100 -11.8 -5.32699 | opp_overlap 911822 911840 CTTTTGGATGCAAAA GCCGAAACAT GAAA GTGTTTCGGC TTTTTTGATCTTTGG Shal_0733 912749 - 912015 - | pseudouridine synthase Shal_0734 913473 - 912757 - | hypothetical protein TERM 956 913081 - 913063 - G 76 -2.4 -5.4492 | TATACAGAGAAAAAA CATCACTA CCG TACCGATG AGGTAGCAAGTCGAT TERM 957 913564 - 913543 - R 100 -9.5 -5.84381 | opp_overlap 913543 TGAGCAATAAAAAAA GGAGCACAT CTAC ATGTACTCC TCTAATTATATGAGA TERM 958 913578 - 913598 + r 95 -8.3 -5.40072 | opp_overlap 913575 913580, overlap 913564 913580 CCTCTAATTATATGA GAGTGTTCA TCT TGAACACAC TTTTTTTACCGCGAA TERM 959 913580 - 913596 + r 71 -9.5 -2.89655 | opp_overlap 913575 913580, overlap 913578 TCTAATTATATGAGA GTGTTCA TCT TGAACAC ACTTTTTTTACCGCG TERM 960 913596 - 913580 - R 71 -9.5 -2.89267 | opp_overlap 913580 913578, overlap 913575 TCTAATTATATGAGA GTGTTCA TCT TGAACAC ACTTTTTTTACCGCG Shal_0735 915048 - 913630 - | Na+/H+ antiporter NhaC Shal_0736 915464 - 915988 + | hypothetical protein Shal_0737 916105 - 917385 + | O-acetylhomoserine/O-acetylserine sulfhydrylase TERM 961 917401 - 917442 + F 83 -5.2 -5.32944 | opp_overlap 917406, overlap 917406 GACTAGCGAACCCTA TCAGATGCAGCCAAAGCA CTAAGC TGGTTTGGCTGCATTTAC TTTTTTGCTTGTCCG TERM 962 917406 - 917437 + F 95 -11.7 -4.46531 | opp_overlap 917406, overlap 917401 GCGAACCCTATCAGA TGCAGCCAAAGCA CTAAGC TGGTTTGGCTGCA TTTACTTTTTTGCTT TERM 963 917437 - 917406 - f 81 -11.7 -2.80994 | opp_overlap 917406 917401 GCGAACCCTATCAGA TGCAGCCAAAGCA CTAAGC TGGTTTGGCTGCA TTTACTTTTTTGCTT TERM 964 918422 - 918412 - g 80 -6.8 -4.62872 | ATGAATTTTGAAAAA GCCT ACC AGGC ATGGAGTGAGGTCGA Shal_0738 917794 - 919653 + | diguanylate cyclase Shal_0739 919880 - 921061 + | porin TERM 965 921086 - 921119 + T 100 -9.8 -5.32565 | gap 1, opp_overlap 921086 ATGTTTTATATTAAA GGCTTATCAAGT-TC ATCTA GATGCTTGATAAGCC TTTTTTGATTGATTA TERM 966 921119 - 921086 - T 71 -7.6 -3.83205 | gap 1, opp_overlap 921086 ATGTTTTATATTAAA GGCTTATCAAG-TTC ATCTA GATGCTTGATAAGCC TTTTTTGATTGATTA Shal_0740 921853 - 921143 - | hypothetical protein TERM 967 921523 - 921539 + g 82 -3 -5.55664 | TAGCGCTGTATCCGA TAAGCT GATTA GGCTTA TTTTTTTCATAGTGG Shal_0741 922639 - 921968 - | cob(II)yrinic acid a,c-diamide reductase TERM 968 922431 - 922445 + g 70 -10 -3.03124 | AAAGAGTGATGCACT TGCCGT TTA ACGGCA TCTTCGCGGATCACC TERM 969 922692 - 922675 - R 100 -10.5 -5.37345 | GGCAAGCATAAAAAA GGCACCC ATTA GGGCGCC TAAAGCATATCCGTA Shal_0742 924068 - 922752 - | anaerobic C4-dicarboxylate transporter TERM 970 924869 - 924881 + G 81 -3.3 -5.37345 | overlap 924870 TGTATCGGCTCGTCT TGGTG GCT CACCC TTTTTTGTCGTTGAA TERM 971 925292 - 925280 - g 72 -6.2 -4.30441 | GCACAATATTGAAAA CGCC GTTAT GGCG ATAGCTGCAGCAAGG Shal_0743 924411 - 925796 + | UDP-N-acetylmuramate TERM 972 926303 - 926318 + GF 77 -6.1 -4.4891 | CGGGGTGACCATCAT GCCTG CCGCAC CAGGC TTTTATCATAATCCC Shal_0744 925803 - 926456 + | aromatic acid decarboxylase Shal_0745 926422 - 926997 + | hypoxanthine phosphoribosyltransferase TERM 973 927084 - 927101 + F 100 -12.7 -5.07275 | opp_overlap 927080 CAATTAGACTATCGA CTCCCGC AATC GCGGGAG TTTTTATATATCTCA Shal_0746 927134 - 928078 + | ABC transporter related Shal_0747 928075 - 928851 + | ABC-2 type transporter TERM 974 928883 - 928900 + T 100 -9.9 -5.76633 | opp_overlap 928883 TTTCTTCTCTAGAAA CCAACAG CTTG CTGTTGG TTTTTTTATGTGTCG TERM 975 928900 - 928883 - T 83 -9.9 -3.85698 | opp_overlap 928883 TTTCTTCTCTAGAAA CCAACAG CTTG CTGTTGG TTTTTTTATGTGTCG Shal_0748 929570 - 929052 - | hypothetical protein TERM 976 929475 - 929489 + g 81 -8.6 -4.42788 | opp_overlap 929475 TGACAGCTGACTAAA GACGAT TTT ATCGTC TTTTATGCACTTAAA TERM 977 929489 - 929475 - G 72 -8.6 -3.75665 | opp_overlap 929475 TGACAGCTGACTAAA GACGAT TTT ATCGTC TTTTATGCACTTAAA TERM 978 929784 - 929760 - R 80 -2.1 -5.64274 | opp_overlap 929752 GGAGCGATAAAAAAA CGGCTTAAC ACTCTAG GTTATACCG TTTTTTTGTTTCTAT Shal_0749 930694 - 929843 - | pantoate--beta-alanine ligase Shal_0750 931552 - 930758 - | 3-methyl-2-oxobutanoate hydroxymethyltransferase Shal_0751 932182 - 931688 - | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 979 932094 - 932133 + g 82 -11.6 -3.33162 | gap 1, opp_overlap 932109 AGTGAGTCCACAGTT GCCAAGCTCAATAAGGCTT CAC AAGCGCTATTGAGC-TGGC TTATCGGATCGGCTA Shal_0752 933474 - 932182 - | poly(A) polymerase TERM 980 933370 - 933384 + g 75 -10 -3.5594 | opp_overlap 933368 933379 933382, overlap 933372 933379 933382 ATCGCGTACACCACC GCCTAC CAA GTAGGC TTTGAAGCCTGACTT TERM 981 933510 - 933537 + r 72 -8.6 -3.5774 | gap 1, overlap 933507 TCTGCGTGTTTTCTT CAGCT-TTTGGAG TAT CTTCAAATAGCTG TTTACAGAATTGGCT Shal_0753 934533 - 933655 - | glutamate--tRNA ligase TERM 982 934457 - 934445 - G 100 -9.1 -5.08824 | overlap 934447 CGGGCACGCAAAAAA CTGCC GAG GGCAG CAACCAATGAACCAA TERM 983 934580 - 934549 - R 100 -13 -4.79352 | opp_overlap 934554, overlap 934554 TTACTGATAATAAAA CAAAAGAGCGGAGC CTAA GCTCCGCACTTTAG GCAGAAATTAACCTG TERM 984 934575 - 934554 - R 100 -11.5 -5.31091 | opp_overlap 934554, overlap 934549 GATAATAAAACAAAA GAGCGGAGC CTAA GCTCCGCAC TTTAGGCAGAAATTA TERM 985 934554 - 934575 + r 88 -11.5 -3.53761 | opp_overlap 934554 934549 GATAATAAAACAAAA GAGCGGAGC CTAA GCTCCGCAC TTTAGGCAGAAATTA Shal_0754 935031 - 934588 - | TraR/DksA family transcriptional regulator Shal_0755 935894 - 935190 - | sugar fermentation stimulation protein Shal_0756 936167 - 937444 + | aminopeptidase B TERM 986 937470 - 937486 + F 93 -8.7 -5.27335 | opp_overlap 937470 ATGAGTCACTGTAAA CCCTGCA TTT TGTAGGG TTTTTATTTACAGAC Shal_0757 937614 - 938609 + | transcriptional regulator, CadC TERM 987 938817 - 938838 + T 100 -5.8 -5.82281 | overlap 938818 938824 AAAGGTTCTTCGATT AGCCACCT AGAGAG AGGTGGCC TTTTTTTGTCTGTTT TERM 988 938818 - 938837 + T 83 -9.3 -4.05708 | overlap 938817 938824 AAGGTTCTTCGATTA GCCACCT AGAGAG AGGTGGC CTTTTTTTGTCTGTT Shal_0758 939198 - 938887 - | hypothetical protein Shal_0759 939798 - 939265 - | 2'-5' RNA ligase TERM 989 940160 - 940179 + G 71 -7.2 -4.15044 | gap 1 AGCCTAGGCGAGTCG CTGCGCGTA ATG TA-GCGCAG TTTATTGCCAAACAG TERM 990 941219 - 941259 + G 87 -11.2 -3.83844 | gap 2, overlap 941220 941256 CTCGCCACGGCCGCG C-TGCGCACCAG-CTCGGGT GTA ACCCGAGACTGGCGCACATG TTATTGCTTGCTAAG TERM 991 941220 - 941257 + G 95 -14.9 -3.50119 | gap 1, overlap 941219 941256 TCGCCACGGCCGCGC TGCGCACCAG-CTCGGGT GTA ACCCGAGACTGGCGCACA TGTTATTGCTTGCTA TERM 992 941818 - 941782 - g 72 -9.4 -3.62096 | opp_overlap 941780 941779 TGGGACGATGTTAAA GGCCGTTTTTACGCTG AAAAA CAGCGTAAAGTTGGCC AGATCTTATTAACCA Shal_0760 939949 - 942486 + | ATP-dependent helicase HrpB TERM 993 942556 - 942536 - g 79 -8.2 -4.24606 | overlap 942527 942538 AAGTTACACCTAAAA CAGGCGCT AAAAG AGCGCCAG CGAAGAAGAGAATTG TERM 994 942554 - 942538 - g 76 -9.4 -3.71913 | overlap 942527 942536 GTTACACCTAAAACA GGCGCT AAAAG AGCGCC AGCGAAGAAGAGAAT TERM 995 944412 - 944376 - g 79 -9.4 -4.1466 | gap 1, opp_overlap 944376, overlap 944380 ATTGAATGCCGAAAA CCA-ACCGCTGGCAGCC TCTA GGCCGCAAGCGGTACAG GGTATTCCTGCTGCC TERM 996 944407 - 944380 - g 100 -14.8 -3.68023 | opp_overlap 944376, overlap 944376 AATGCCGAAAACCAA CCGCTGGCAGCC TCTA GGCCGCAAGCGG TACAGGGTATTCCTG TERM 997 944814 - 944843 + G 74 -10.7 -3.14211 | opp_overlap 944811 944807 944808 GAGAGAAAGCTATCA GCCAGTGGCTAAC TGCG GTGAGCCACTGCC TTGGTGGAAGAAACT Shal_0761 942511 - 944871 + | penicillin-binding protein 1B Shal_0762 944864 - 945364 + | hypothetical protein Shal_0763 946662 - 945475 - | sugar efflux transporter TERM 998 947140 - 947158 + r 100 -13.2 -4.47007 | overlap 947137 TCTTTGCTTTTCCTC GGACCTAG AAC CTAGGTCC TTCTTTTAATTTTTA Shal_0764 947608 - 947171 - | GCN5-related N-acetyltransferase Shal_0765 948619 - 947867 - | hypothetical protein TERM 999 949192 - 949164 - R 72 -10.4 -2.56596 | opp_overlap 949169, overlap 949169 CTTCCCACCAAGTGA CAAAAGGTGAGC TTAAT GCTCACCTTTTT GTTTGGATTAAAATG TERM 1000 949187 - 949169 - R 90 -10.3 -4.48221 | opp_overlap 949169, overlap 949164 CACCAAGTGACAAAA GGTGAGC TTAAT GCTCACC TTTTTGTTTGGATTA TERM 1001 949169 - 949187 + r 100 -10.3 -5.33026 | opp_overlap 949169 949164 CACCAAGTGACAAAA GGTGAGC TTAAT GCTCACC TTTTTGTTTGGATTA Shal_0766 951389 - 949200 - | TonB-dependent receptor TERM 1002 950338 - 950358 + g 76 -4.7 -4.85599 | GCCTTAACGCGTACA TCCATTGGC GCC GTTGATGGA TTTTTATCAAATGCA TERM 1003 950741 - 950724 - G 72 -9.1 -3.5393 | opp_overlap 950724 950726 950738 ATCATTCTTCTCAAA GCCGGTG TCGC CACCGAC TCCGTTGATATGTTT TERM 1004 950726 - 950745 + g 70 -9.2 -3.42257 | opp_overlap 950724, overlap 950724 950738 CATTCTTCTCAAAGC CGGTGTCG CCAC CGACTCCG TTGATATGTTTAAAG Shal_0767 951636 - 952340 + | hypothetical protein TERM 1005 952371 - 952399 + F 95 -11.2 -5.10154 | gap 1, opp_overlap 952371 TTAATTCTAGTTAAA GCCACTTAACGCA ATTT TGC-TTAAGTGGC TTTTTAGTTTTAAGT TERM 1006 952399 - 952371 - f 88 -11.2 -3.66874 | gap 1, opp_overlap 952371 TTAATTCTAGTTAAA GCCACTTAACGCA ATTT TGC-TTAAGTGGC TTTTTAGTTTTAAGT TERM 1007 952524 - 952536 + F 73 -10.5 -2.78465 | opp_overlap 952507, overlap 952523 TCACTTGCTGCAAGC GCGCC GAG GGCGC ATTCTATCTGTCCCT TERM 1008 952632 - 952616 - f 71 -9.4 -2.83641 | GAAGGTAGCAGGAGA GTGGGG AGTAA CCCCAC ACCGACGAGGCAACT Shal_0768 953051 - 954421 + | amino acid carrier protein TERM 1009 954548 - 954520 - T 70 -8.9 -3.22917 | opp_overlap 954521, overlap 954518 954517 954511 954521 ATCAAAGCAAAATTA GGCCCATCTCA TCAATAG TGAGATGGGCT TTTTCTTGGGCTCTT TERM 1010 954547 - 954521 - T 83 -12.4 -2.52666 | opp_overlap 954521, overlap 954520 954518 954517 954511 TCAAAGCAAAATTAG GCCCATCTCA TCAATAG TGAGATGGGC TTTTTCTTGGGCTCT TERM 1011 954521 - 954547 + T 100 -13.1 -5.09204 | opp_overlap 954521 954520 954518 954517 954511 TCAAAGCAAAATTAG GCCCATCTCAT CAATA GTGAGATGGGC TTTTTCTTGGGCTCT Shal_0769 954771 - 954517 - | hypothetical protein TERM 1012 956081 - 956071 - g 72 -5.4 -4.42386 | CCGTGAGCTAGAAAA CTTG CAT CAAG AGCAAGATAGCCTAC TERM 1013 957032 - 957020 - g 72 -9.1 -3.62531 | GAGCAAAAAGAGCAA GCGCT TGA AGCGC GCATGGAAAAGAATG TERM 1014 957183 - 957169 - g 73 -4.2 -4.84359 | overlap 957180 GCAGTGGTACAAAAA CGAGCT TAA ATCTCG TGGCGTCGACGAAGC TERM 1015 957808 - 957833 + G 71 -3.9 -4.80882 | GGTACCGCAGTCAAT TATGGCGCTGC GTGA GCAGGGGCGTA TTTTTGGTGTCGACT Shal_0770 954866 - 958555 + | hypothetical protein Shal_0771 958555 - 959208 + | hypothetical protein Shal_0772 959210 - 960430 + | hypothetical protein TERM 1016 960531 - 960488 - f 88 -11.4 -3.53224 | gap 1, opp_overlap 960501, overlap 960501 GATGGGGTCTGTAAA TGAT-ACAAAAAAAGCACCTT TTA AAGGTGCTTTTTTTATGAGCA TTAATCGGTGTATTG TERM 1017 960501 - 960517 + F 100 -10.9 -5.61596 | opp_overlap 960488 960501 AATGATACAAAAAAA GCACCTT TTA AAGGTGC TTTTTTTATGAGCAT TERM 1018 960517 - 960501 - f 100 -10.9 -5.75478 | opp_overlap 960501, overlap 960488 AATGATACAAAAAAA GCACCTT TTA AAGGTGC TTTTTTTATGAGCAT Shal_0773 960923 - 962179 + | sodium:dicarboxylate symporter TERM 1019 962216 - 962234 + T 100 -13.2 -5.56263 | opp_overlap 962216 ATTAAAGATAAAAAA TGCCAGCA ACT TGCTGGCA TTTTTGTTTTCTGCT TERM 1020 962234 - 962216 - T 100 -13.2 -5.5762 | opp_overlap 962216 ATTAAAGATAAAAAA TGCCAGCA ACT TGCTGGCA TTTTTGTTTTCTGCT Shal_0774 963665 - 962283 - | two component, sigma54 specific, Fis family transcriptional regulator Shal_0775 965796 - 963769 - | histidine kinase TERM 1021 964987 - 965000 + g 72 -3.1 -5.00884 | GCTAACAAAGATAGC GAGTG ACAA CATTC TTTTTTGAGCAGAGT TERM 1022 966249 - 966239 - g 73 -4 -4.85177 | AAATGAGATGAAAAA CTTT AAA AAAG CAGTGTGTATCGCAA TERM 1023 966480 - 966459 - g 87 -7.3 -5.09762 | GCTGAAGAAACAAAA CATGAGCAC TACA ATGCCCATG ACTCTCATTTCCCTG TERM 1024 966683 - 966645 - g 77 -11.1 -3.24059 | gap 1, opp_overlap 966645 966644, overlap 966638 TTAAAAGACACTGAA GATCGTCAAGCGGCGCTT GCTG AAGCACCGCGTGAC-ACC GTTGATGTTGTCGTT Shal_0776 966231 - 968021 + | flavocytochrome c TERM 1025 968128 - 968096 - f 77 -10.7 -2.82895 | opp_overlap 968101, overlap 968101 CCTTCGATTAAGAAG CAAAAGCCTTCATCT TAT AGATGGAGGCTTTTT TGTATCTGCTACTTT TERM 1026 968123 - 968101 - f 91 -10.6 -4.5774 | opp_overlap 968101, overlap 968096 GATTAAGAAGCAAAA GCCTTCATCT TAT AGATGGAGGC TTTTTTGTATCTGCT TERM 1027 968101 - 968123 + F 100 -12.8 -5.43414 | opp_overlap 968101 968096 GATTAAGAAGCAAAA GCCTTCATCT TAT AGATGGAGGC TTTTTTGTATCTGCT TERM 1028 968239 - 968225 - f 72 -10 -2.53581 | CACATTGCTAATGCA TCAGGC TAC GCCTGA CCAACATCGTGAGCT TERM 1029 968268 - 968305 + F 95 -11.3 -4.77173 | opp_overlap 968277, overlap 968269 CTTCCAGCTCACACT CGGGCAAGAGGGGGA CAACAGCT TCCCCCTCTTGACCA TTTCTTTTATAAAGA TERM 1030 968269 - 968304 + F 100 -14.8 -3.45581 | opp_overlap 968277, overlap 968268 TTCCAGCTCACACTC GGGCAAGAGGGGGA CAACAGCT TCCCCCTCTTGACC ATTTCTTTTATAAAG TERM 1031 968486 - 968459 - f 72 -8.4 -3.53012 | overlap 968463 GCCTGCCCCGCGAAA GCTACGCCGACA TCCA TGTCGGCATCAC GCGACTCTGGTTTAT TERM 1032 968482 - 968463 - f 72 -10 -2.64155 | overlap 968459 GCCCCGCGAAAGCTA CGCCGACA TCCA TGTCGGCA TCACGCGACTCTGGT Shal_0777 968629 - 969606 + | hypothetical protein TERM 1033 970422 - 970454 + F 88 -10.7 -4.12899 | opp_overlap 970442 970444 TTGAAGCATGATTGA GCCGTTATTTGTACT AAA AGTACAAGTGACGAC TTGTTTAATTATCGT Shal_0778 970624 - 971628 + | basic membrane lipoprotein TERM 1034 971649 - 971674 + F 93 -10.5 -4.85599 | opp_overlap 971649 ACTAAGTTAGATGAA GCTCTCTAGTT TTTT GACTAGGGAGC TTTTTGTAAAGTGGC TERM 1035 971867 - 971848 - g 79 -2.9 -5.28176 | gap 1 GGTATCGACAAAAAA TTCG-GTG CTGTT CACGCGAA CAAAGAGATCTGCTT TERM 1036 972794 - 972755 - g 70 -4.9 -4.4078 | overlap 972756 GTGGTTCAATTAAAA TCGCAGGTAGGGTTATC GATGCT GAAAACCCAAGCTGCGC CGACGATATGCGTCA Shal_0779 971770 - 973359 + | ABC transporter related Shal_0780 973356 - 974486 + | inner-membrane translocator TERM 1037 974601 - 974629 + G 76 -8.1 -4.07568 | GGCATCGTCAACATT GCACTGGAGGGTA AGA TGCTCTCTAGCGC TTTTGCCGCAGCGGC Shal_0781 974490 - 975455 + | inner-membrane translocator TERM 1038 975506 - 975490 - f 71 -9.5 -2.78712 | overlap 975487 TGTTGAAGTCAATCA GTTAGAC TGC GTCTAAC AACTAAAGTCGTGAG TERM 1039 975535 - 975514 - f 75 -8.1 -4.07618 | gap 1 CGTCTAACAACTAAA GTCGTGAGCT TCC AGCTCAC-AC TCGGGCAAGAGGGGG TERM 1040 975544 - 975567 + F 73 -9.6 -3.12351 | opp_overlap 975546 CTCACACTCGGGCAA GAGGGGGA CAACAGCT TCCCCCTC TTGCATCTCCCCAGC TERM 1041 975687 - 975660 - f 72 -8.4 -3.53012 | overlap 975664 TCCTGCCCCGCGAAA GCTACGCCGACA TCCA TGTCGGCATCAC GCGATTTATTCCAAC TERM 1042 975683 - 975664 - f 72 -10 -2.64155 | overlap 975660 GCCCCGCGAAAGCTA CGCCGACA TCCA TGTCGGCA TCACGCGATTTATTC TERM 1043 975917 - 975902 - f 71 -6.2 -4.18506 | TGATTGGTAAAAGAA TGTAGA GACC TCTACA TAAAGACGCTCAATT TERM 1044 976387 - 976377 - g 74 -5.4 -4.7173 | opp_overlap 976377 GATGACATTGAAAAA CTGT TCG ACAG TTACCTGTATTACTG Shal_0782 976092 - 976871 + | hypothetical protein TERM 1045 976921 - 976881 - f 90 -9.8 -4.39998 | gap 2, opp_overlap 976874 976903, overlap 976877 GAGTGATATAACAAA CGCGTGCATTTGACCTCCGC TTC GCTGCGG-CAAATG-ACGCG GGCGTTATACATTCG Shal_0783 976947 - 977543 + | hypothetical protein TERM 1046 977665 - 977692 + T 82 -10.6 -3.53012 | opp_overlap 977664, overlap 977669 GTTGAAGAAATAACC GTAATGCCCACA CGGA TGTGGGCATAGC TTTCGCGGGACAGGC TERM 1047 977669 - 977688 + T 81 -12.2 -2.64155 | opp_overlap 977664, overlap 977665 AAGAAATAACCGTAA TGCCCACA CGGA TGTGGGCA TAGCTTTCGCGGGAC TERM 1048 977882 - 977903 + T 75 -8.1 -4.07618 | gap 1 TCCCCTCTTGCCCGA GT-GTGAGCT GGA AGCTCACGAC TTTAGTTGTTAGACG TERM 1049 977950 - 977934 - T 71 -6.5 -4.2803 | overlap 977935 CAGTCTAACTTAAAA GTCAGGC GTA GCCTGAT AACAACAAGCTCCCT TERM 1050 977949 - 977935 - T 75 -10 -3.16336 | overlap 977934 AGTCTAACTTAAAAG TCAGGC GTA GCCTGA TAACAACAAGCTCCC TERM 1051 977981 - 978033 + T 84 -2.1 -5.79595 | opp_overlap 977960 977959 977993, overlap 977988 977993 GCGCCAAAAAGTTCG GCGCAAAAAAAAGCACAACCCTA ACTAACA TAGGATTGTGCTTTTCTTTTAGA TTTTTTCTTTTCCGG TERM 1052 977988 - 978026 + T 81 -7.6 -4.55016 | opp_overlap 977960 977959 977993, overlap 977981 977993 AAAGTTCGGCGCAAA AAAAAGCACAACCCTA ACTAACA TAGGATTGTGCTTTTC TTTTAGATTTTTTCT TERM 1053 977993 - 978021 + T 86 -7.5 -5.14698 | opp_overlap 977993, overlap 977988 977981 TCGGCGCAAAAAAAA GCACAACCCTA ACTAACA TAGGATTGTGC TTTTCTTTTAGATTT TERM 1054 978021 - 977993 - T 100 -9.7 -5.75342 | opp_overlap 977988 977981 977993 TCGGCGCAAAAAAAA GCACAACCCTA ACTAACA TAGGATTGTGC TTTTCTTTTAGATTT Shal_0784 979105 - 978116 - | fructose-1,6-bisphosphatase TERM 1055 978491 - 978505 + g 75 -10 -3.54146 | opp_overlap 978469, overlap 978487 GTAAGTCTGCATTGG CGCTTC CCA GAAGCG TTGGTTTGACATGTT TERM 1056 979242 - 979260 + H 78 -2.5 -5.50723 | gap 1, opp_overlap 979242 TTTCGGCTGGAATGA TTG-GCAA AAAA TTGCACAA TTTTTGTTTTAGTGA TERM 1057 979682 - 979668 - g 74 -7 -4.23674 | opp_overlap 979669 TCTGACGAAGAGAAA GCGCGC CGT GAGCGC CAGCGTATTTATGGT TERM 1058 980439 - 980454 + G 72 -4.7 -4.56702 | TGGGCGTCAGAGCGA GATGG CTTTAA CCATC TTTATTTAATTGGCC Shal_0785 979344 - 981590 + | peptidase S9B dipeptidylpeptidase IV subunit TERM 1059 981620 - 981671 + T 100 -10.5 -5.4756 | gap 2, opp_overlap 981620 GTGTGATATAAATCA GGCGTTGGTACTGTTAATTGTGGTT AATA GACTGCAATTAATAG-ACCA-CGCC TTTTTTATTAAGGTT TERM 1060 981950 - 981979 + T 84 -12.3 -3.05596 | opp_overlap 981956, overlap 981956 CGAAATTTAAGCATA AAAAAAGCCAGTC AATC GACTGGCTTTTTA TTCACTGCAGCGCTA TERM 1061 981956 - 981973 + T 95 -11.3 -5.10461 | opp_overlap 981956, overlap 981950 TTAAGCATAAAAAAA GCCAGTC AATC GACTGGC TTTTTATTCACTGCA TERM 1062 981973 - 981956 - T 100 -11.3 -5.71983 | opp_overlap 981950 981956 TTAAGCATAAAAAAA GCCAGTC AATC GACTGGC TTTTTATTCACTGCA Shal_0786 982736 - 982020 - | two-component response regulator Shal_0787 983297 - 983725 + | hypothetical protein TERM 1063 984784 - 984762 - g 79 -12 -3.20164 | opp_overlap 984758 CGATAGTGAAGGTAA CACCACAACC CTT GGCCGTGGTG GTAGTGATTACTCTG Shal_0788 984154 - 985539 + | aspartate kinase III TERM 1064 985860 - 985846 - g 76 -2.1 -5.30155 | gap 1, overlap 985847 985848 GGATTAATCAAAAAA GTGGTG AGTT CACC-C TTGGGCGTTTCGATC TERM 1065 986151 - 986173 + G 74 -7 -4.22414 | opp_overlap 986153 ATGTATTGTCCCGAA TACGATGTGG ATT CAGCATCGTA TTTCTCTATTCCCTT Shal_0789 985596 - 986702 + | succinylglutamate desuccinylase/aspartoacylase TERM 1066 986747 - 986730 - T 89 -9.9 -4.30441 | opp_overlap 986730 TCATAATATGTAAAA GGCTAAC ATCA GTTAGCC TTTTTTATTGTCATC TERM 1067 986730 - 986747 + T 100 -9.9 -5.58179 | opp_overlap 986730 TCATAATATGTAAAA GGCTAAC ATCA GTTAGCC TTTTTTATTGTCATC Shal_0790 987234 - 986773 - | DNA-binding transcriptional regulator AsnC Shal_0791 988293 - 987616 - | pseudouridine synthase Shal_0792 988697 - 988407 - | hypothetical protein Shal_0793 989285 - 988737 - | methyltransferase type 12 Shal_0794 989667 - 989257 - | hypothetical protein TERM 1068 989998 - 989979 - H 76 -9.3 -3.6445 | opp_overlap 989979, overlap 989971 AGAATAAGCTGGAAA GCGAGCT GTCAGG AGCTCGC TTTTTTTTCTTCAAT TERM 1069 989979 - 989998 + H 100 -9.3 -6.11243 | opp_overlap 989971 989979 AGAATAAGCTGGAAA GCGAGCT GTCAGG AGCTCGC TTTTTTTTCTTCAAT TERM 1070 990978 - 990988 + G 74 -5.4 -4.59773 | overlap 990974 ACGTTTGTCTGCATG TCAC AAC GTGA TTTTTACAGGTCACC Shal_0795 990118 - 991107 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 1071 991131 - 991172 + F 91 -8.1 -5.252 | gap 1 GTTAGGTAATAAGTG GGCAGGAGCGACTTAGGT GCAAATA ACTTGAG-CGCTACTGCC TTTTTTATAGCGATA TERM 1072 991989 - 992025 + G 74 -3.6 -5.00616 | gap 1, overlap 991990 TATTAGGCATGACCC GGCGCTCGCACTGCAGA TGTA TCTGCAG-GCGGTGGCA TTTTTTCAACGAACG Shal_0796 991312 - 992049 + | dienelactone hydrolase TERM 1073 992121 - 992139 + T 100 -14.6 -4.13767 | opp_overlap 992121 ACACGGATAAAAAAA GGGCCAGT ATG ACTGGCCC TTTTCAGATCACGGA TERM 1074 992139 - 992121 - T 100 -14.6 -5.65177 | opp_overlap 992121 ACACGGATAAAAAAA GGGCCAGT ATG ACTGGCCC TTTTCAGATCACGGA Shal_0797 992708 - 992184 - | hypothetical protein Shal_0798 993006 - 993749 + | spermine synthase TERM 1075 993767 - 993802 + F 83 -9.2 -4.03234 | gap 1, overlap 993771 CCTGTAGGTTAGCTC GCATCTCGCTAATACTG CTC TAGTATTAGCGAG-TCC TTTGTCTAGGGGGGC TERM 1076 993771 - 993799 + F 100 -15.5 -3.06418 | overlap 993767 TAGGTTAGCTCGCAT CTCGCTAATACTG CTC TAGTATTAGCGAG TCCTTTGTCTAGGGG Shal_0799 994152 - 994721 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 1077 994747 - 994770 + F 71 -9.7 -2.8194 | ATTGATAGCAGTGTG TTAGCGAGA TCCACC TCTCGCTAA TGTCCTAGATAGTTA TERM 1078 994804 - 994846 + F 73 -5.8 -4.58283 | gap 1, overlap 994805 AGCGATTTCATCTCC ATTGTTCAGCTTAG-TGTC CCCCCT GAAATCTAAGCTGAACAAA TTTTTACAGAACTTG TERM 1079 994805 - 994845 + F 72 -9.3 -3.34488 | gap 1, overlap 994804 GCGATTTCATCTCCA TTGTTCAGCTTAG-TGTC CCCCCT GAAATCTAAGCTGAACAA ATTTTTACAGAACTT Shal_0800 995018 - 996592 + | FAD-dependent pyridine nucleotide-disulphide oxidoreductase TERM 1080 996630 - 996615 - f 89 -10.4 -4.19177 | opp_overlap 996615 ACTCGTTAATATAAA GCCAGC AGAT GCTGGC TTTTTTATTGAGCTA TERM 1081 996615 - 996630 + F 100 -10.4 -5.46657 | opp_overlap 996615 ACTCGTTAATATAAA GCCAGC AGAT GCTGGC TTTTTTATTGAGCTA Shal_0801 996660 - 997784 + | diguanylate cyclase Shal_0802 998064 - 997867 - | hypothetical protein TERM 1082 998689 - 998654 - R 86 -9.1 -4.4009 | opp_overlap 998658, overlap 998658 CCTTATTTTAGAAAA CGAAGGCCTCAGCTT TACAGC AAGCTAAGGCCTTTA GTAATTAACATTAAG TERM 1083 998685 - 998658 - R 89 -12.1 -3.75517 | opp_overlap 998658, overlap 998654 ATTTTAGAAAACGAA GGCCTCAGCTT TACAGC AAGCTAAGGCC TTTAGTAATTAACAT TERM 1084 998658 - 998685 + r 83 -9.9 -3.84514 | opp_overlap 998658 998654 ATTTTAGAAAACGAA GGCCTCAGCTT TACAGC AAGCTAAGGCC TTTAGTAATTAACAT Shal_0803 1000124 - 998700 - | hypothetical protein TERM 1085 999665 - 999648 - G 71 -7.7 -3.91984 | gap 1, overlap 999649 ACAGGTTTCAAATAA GCCGCCTG AAA CAGGCG-C AGCTGTGGCGTAGTC TERM 1086 1000307 - 1000318 + r 72 -4.4 -4.76075 | opp_overlap 1000302 1000307, overlap 1000302 GCAATAATTATAAAA GCTT GATT AAGC TTTTGTTGATGTACT Shal_0804 1000875 - 1000459 - | hypothetical protein TERM 1087 1002152 - 1002142 - g 72 -3.2 -5.08169 | opp_overlap 1002144 1002146, overlap 1002143 1002146 ATACATTGCAAAAAA GCCA GCT TAGC CATCCTAAGCTATTA Shal_0805 1001115 - 1002290 + | FAD dependent oxidoreductase TERM 1088 1003301 - 1003313 + G 72 -4.8 -4.58395 | ACCGGGGCCTATGTT TGCC TTGGC GGCA TTTTTAGGGGCTGAG Shal_0806 1002450 - 1003664 + | chromate transporter TERM 1089 1003718 - 1003693 - T 100 -17.7 -5.42975 | opp_overlap 1003693 CCAGATAAATAAAAA GGCGGTAAGAG CATG CTCTTACCGCC TTTTTTGATCGACTA TERM 1090 1003693 - 1003718 + T 100 -17.7 -5.15634 | opp_overlap 1003693 CCAGATAAATAAAAA GGCGGTAAGAG CATG CTCTTACCGCC TTTTTTGATCGACTA TERM 1091 1003742 - 1003767 + T 72 -9 -3.30903 | overlap 1003761 TCGACTATGATTCTA GCTAGACGAG TTCTGC CTCGGCTAGC TTCTCAGCCACTTTT Shal_0807 1008068 - 1003743 - | formate dehydrogenase, alpha subunit TERM 1092 1004240 - 1004204 - G 73 -7.9 -4.18494 | overlap 1004206 GATTGGTATGCAAAA TAGGCGTGCCAGGGTGA CCT TCAGCCGGACACGGCCA TTGCAGGCCTAGACG TERM 1093 1004238 - 1004206 - G 72 -8.3 -3.69216 | overlap 1004204 TTGGTATGCAAAATA GGCGTGCCAGGGTGA CCT TCAGCCGGACACGGC CATTGCAGGCCTAGA Shal_0808 1009365 - 1008373 - | Ion transport 2 domain-containing protein Shal_0809 1009893 - 1010774 + | peptide chain release factor 2 Shal_0810 1010787 - 1012292 + | lysyl-tRNA synthetase TERM 1094 1012332 - 1012347 + F 100 -10.4 -5.60993 | opp_overlap 1012332 ATAAGACTTTAAAAA CCAGCC ACTA GGCTGG TTTTTTTATACCACA TERM 1095 1012347 - 1012332 - f 93 -10.4 -4.67556 | opp_overlap 1012332 ATAAGACTTTAAAAA CCAGCC ACTA GGCTGG TTTTTTTATACCACA Shal_0811 1012995 - 1015454 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) Shal_0812 1016111 - 1015500 - | pseudouridine synthase TERM 1096 1015700 - 1015710 + g 85 -5.4 -5.28683 | overlap 1015690 TTGGGCCGTGGCGAG GATC GCG GATC TTTTTTCCTCTTGCT Shal_0813 1016292 - 1017083 + | glucosamine-6-phosphate isomerase TERM 1097 1017153 - 1017120 - f 79 -11.3 -2.52896 | gap 1, opp_overlap 1017129, overlap 1017129 TTAGGTGCCAATTCA CTATAAAAAGACAAGC TGA GCTTGTCTTTTTAC-G TATAGATTAGGCTTA TERM 1098 1017129 - 1017145 + F 93 -10.9 -4.71061 | opp_overlap 1017120 1017129 AATTCACTATAAAAA GACAAGC TGA GCTTGTC TTTTTACGTATAGAT TERM 1099 1017145 - 1017129 - f 93 -10.9 -4.92783 | opp_overlap 1017129, overlap 1017120 AATTCACTATAAAAA GACAAGC TGA GCTTGTC TTTTTACGTATAGAT Shal_0814 1017318 - 1017989 + | nitroreductase Shal_0815 1018054 - 1018371 + | cupin 2 domain-containing protein Shal_0816 1018503 - 1020452 + | peptidase U32 TERM 1100 1020476 - 1020507 + F 76 -7.4 -4.20516 | GGTTTAGCGCTTATA TTTAAGGCTTAGCT TTTA GGCTAGGCTTTAGA TTTATTGAATAAAGG Shal_0817 1020533 - 1020907 + | hypothetical protein Shal_0818 1021406 - 1020960 - | Fe-S metabolism associated SufE Shal_0819 1022931 - 1021720 - | SufS subfamily cysteine desulfurase TERM 1101 1022994 - 1022965 - R 100 -20.9 -5.69262 | CGATAAAAATAAAAA GGCGCTCAGATCT TGTA AGATCTGAGCGCC TAAAGCAAGTTTAGA Shal_0820 1024071 - 1023028 - | aldo/keto reductase Shal_0821 1025118 - 1024177 - | MarR family transcriptional regulator Shal_0822 1025750 - 1025211 - | NTPase TERM 1102 1025286 - 1025261 - G 71 -7.5 -3.96068 | CCATTGCAAGAATAA TCGCCTGGGTA TAGT TACCTTGGCGA GTCGCATGGCCTTCA Shal_0823 1026307 - 1027593 + | aromatic amino acid permease TERM 1103 1027660 - 1027688 + F 79 -11.2 -2.60671 | gap 1, opp_overlap 1027664, overlap 1027664 ATAGCCCGATTTTTT TAAAGCCTAGCGC TCTT GC-CTAGGCTTTA TCAGTTAAGTTTTAT TERM 1104 1027664 - 1027684 + F 73 -7.6 -3.98484 | gap 1, opp_overlap 1027664, overlap 1027660 CCCGATTTTTTTAAA GCCTAGCGC TCTT GC-CTAGGC TTTATCAGTTAAGTT TERM 1105 1028456 - 1028492 + G 71 -10.7 -2.72461 | opp_overlap 1028448, overlap 1028455 AACTGAAGGTGTACT TGCCGGTCCGCTACGAG TAG CTCGTCGCGCTCCAGCA CTTTACCGCCAGTTA TERM 1106 1028607 - 1028591 - g 72 -5 -4.67982 | opp_overlap 1028591 TGTTAGCGAAGAAAA CGCTGC TGGTG GCCGCG TAGTTACATCACCAA Shal_0824 1027770 - 1029137 + | L-serine dehydratase 1 TERM 1107 1029116 - 1029138 + T 70 -2.7 -5.06816 | gap 1, opp_overlap 1029116, overlap 1029118 CGGTTTGGCTATCAA GGTAACCAGC ATCT GC-GGTTAAC TTTTTATTGCCAGAT TERM 1108 1029178 - 1029195 + T 95 -11.3 -4.86133 | opp_overlap 1029178 CATGAGTAGCAAAAA GGCCATC AAAT GATGGCC TTTTTAATGTCTGTC TERM 1109 1029195 - 1029178 - T 95 -11.3 -4.78107 | opp_overlap 1029178 CATGAGTAGCAAAAA GGCCATC AAAT GATGGCC TTTTTAATGTCTGTC Shal_0825 1029685 - 1029242 - | GCN5-related N-acetyltransferase Shal_0826 1029843 - 1030181 + | hypothetical protein Shal_0827 1030351 - 1031649 + | sodium:dicarboxylate symporter TERM 1110 1031675 - 1031725 + T 90 -11.5 -3.91072 | gap 1, opp_overlap 1031685 1031693, overlap 1031685 1031693 AATTATTCACCATTG TGTT-AACGCATAAAAAAACCGCC AAAA GGCGGTTTTTTTATGTCTGGAACA TTTATGACGATTTAC TERM 1111 1031714 - 1031685 - T 100 -16.7 -2.52676 | opp_overlap 1031685 1031675 1031693, overlap 1031693 CATTGTGTTAACGCA TAAAAAAACCGCC AAAA GGCGGTTTTTTTA TGTCTGGAACATTTA TERM 1112 1031685 - 1031714 + T 100 -16.7 -2.89055 | opp_overlap 1031685 1031693, overlap 1031675 1031693 CATTGTGTTAACGCA TAAAAAAACCGCC AAAA GGCGGTTTTTTTA TGTCTGGAACATTTA TERM 1113 1031693 - 1031706 + T 100 -9.5 -5.76633 | opp_overlap 1031693 1031685, overlap 1031685 1031675 TAACGCATAAAAAAA CCGCC AAAA GGCGG TTTTTTTATGTCTGG TERM 1114 1031706 - 1031693 - T 100 -9.5 -5.66684 | opp_overlap 1031685 1031675 1031693, overlap 1031685 TAACGCATAAAAAAA CCGCC AAAA GGCGG TTTTTTTATGTCTGG Shal_0828 1032220 - 1031807 - | protein of unknown function DUF306 Meta and HslJ Shal_0829 1032352 - 1032507 + | hypothetical protein Shal_0830 1033596 - 1032676 - | putative diguanylate cyclase Shal_0831 1033884 - 1034441 + | GCN5-related N-acetyltransferase Shal_0832 1034450 - 1034800 + | hypothetical protein Shal_0833 1035191 - 1035595 + | hypothetical protein Shal_0834 1036334 - 1035798 - | hypothetical protein TERM 1115 1036454 - 1036440 - H 70 -8.6 -3.34013 | TACGCTTTGAAGCAA TCAAGC TGC GCTTGA TAAAGGTCGTGGCGC TERM 1116 1036463 - 1036477 + H 85 -11.4 -3.28712 | CGCTTGATAAAGGTC GTGGCG CTT CGCCAC TTATGAGGGGGACGC TERM 1117 1036602 - 1036581 - H 75 -8.1 -4.07618 | gap 1 CGTCTAACAATTAAA GTCGTGAGCT TCC AGCTCAC-AC TCGGCAAGGAGGACT Shal_0835 1037152 - 1037847 + | hypothetical protein TERM 1118 1037909 - 1037895 - T 72 -8.6 -3.46659 | TACAGCGATAAGCAA TCAAGC TGC GCTTGA TAAAGGTCGTGGGAT TERM 1119 1037937 - 1037914 - T 84 -10.4 -3.85698 | gap 1 GCTGCGCTTGATAAA GGTCGTGGGAT TCC ATCCCAC-ACC AGGGCAAGGAGGACT Shal_0836 1039533 - 1038247 - | hypothetical protein TERM 1120 1038747 - 1038771 + g 73 -10.1 -3.43961 | opp_overlap 1038741 CCAACTTAACTTTCA CAGTATGCTGT TCG AAAGCATACTG TTGTAGATCTTCTAC TERM 1121 1039780 - 1039769 - H 75 -5.8 -4.67982 | GGTCATTGAAGAAAA TCGC GTGA GCGA GGCATGGAAGCCGAG Shal_0837 1040247 - 1041074 + | hypothetical protein TERM 1122 1041095 - 1041134 + F 74 -8.9 -3.56727 | gap 1, opp_overlap 1041101, overlap 1041098 1041101 ACTCTTTGCCTTCCT C-AATAATACTCGTGAAC TGTGT GTTCATGGGTATTATTCG TTGTAGTTCATTCAC TERM 1123 1041098 - 1041130 + F 82 -10.8 -3.50422 | opp_overlap 1041101, overlap 1041095 1041101 CTTTGCCTTCCTCAA TAATACTCGTGAAC TGTGT GTTCATGGGTATTA TTCGTTGTAGTTCAT TERM 1124 1041101 - 1041127 + F 73 -8.1 -3.87584 | opp_overlap 1041101, overlap 1041098 1041095 TGCCTTCCTCAATAA TACTCGTGAAC TGTGT GTTCATGGGTA TTATTCGTTGTAGTT Shal_0838 1041380 - 1042207 + | hypothetical protein Shal_0839 1042806 - 1042333 - | GCN5-related N-acetyltransferase Shal_0840 1043853 - 1042900 - | LuxR family transcriptional regulator TERM 1125 1044088 - 1044098 + G 76 -8.2 -4.08767 | AGGATCGGTGGCCTC GCCC GCT GGGC TTTTGGGGGGATGGC Shal_0841 1043923 - 1045572 + | fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein Shal_0842 1045617 - 1047347 + | thiamine pyrophosphate protein central region TERM 1126 1047416 - 1047387 - T 93 -14.5 -2.87881 | opp_overlap 1047395, overlap 1047395 TAAGTGTTCCAGACA CAAAAAAACCGCC CTTG GGCGGTTTTTTTA TTAGCGCTGAATAAA TERM 1127 1047408 - 1047395 - T 100 -9.5 -5.76633 | opp_overlap 1047395, overlap 1047387 CCAGACACAAAAAAA CCGCC CTTG GGCGG TTTTTTTATTAGCGC TERM 1128 1047395 - 1047408 + T 100 -9.5 -5.7946 | opp_overlap 1047395 1047387 CCAGACACAAAAAAA CCGCC CTTG GGCGG TTTTTTTATTAGCGC Shal_0843 1048610 - 1047456 - | S-adenosylmethionine synthetase TERM 1129 1049291 - 1049275 - g 71 -8 -3.83756 | overlap 1049266 AAAGCACAACCCAAA CAACCC TGACT GGGTTG ATCGTGACCGCTTTA TERM 1130 1050615 - 1050629 + G 71 -7 -4.1552 | GGCGTCCATGTGATG CGGCTG AAA CTGCCG TTTCTTGGAAGAATG TERM 1131 1051012 - 1051030 + G 70 -9.6 -3.09193 | TGGCTTTGGCGGCGC GGTTGTCG GTA TGACAACC TTCGGTGAGTCTGCT Shal_0844 1049126 - 1051117 + | transketolase TERM 1132 1051173 - 1051144 - f 95 -15.1 -2.80994 | opp_overlap 1051144 1051147, overlap 1051147 GTTAAGGCTATGATA CAACGGCTTACCT AATG AGGTAGGCCGTTG TCGTATCAATAAATG TERM 1133 1051144 - 1051173 + F 100 -17.3 -2.64933 | opp_overlap 1051144 1051147, overlap 1051147 GTTAAGGCTATGATA CAACGGCTTACCT AATG AGGTAGGCCGTTG TCGTATCAATAAATG TERM 1134 1051170 - 1051147 - f 82 -11 -3.55219 | opp_overlap 1051144 1051147, overlap 1051144 AAGGCTATGATACAA CGGCTTACCT AATG AGGTAGGCCG TTGTCGTATCAATAA TERM 1135 1051147 - 1051170 + F 95 -13.2 -3.47573 | opp_overlap 1051147 1051144, overlap 1051144 AAGGCTATGATACAA CGGCTTACCT AATG AGGTAGGCCG TTGTCGTATCAATAA TERM 1136 1051750 - 1051735 - g 83 -9 -4.27584 | overlap 1051719 ACTTCGAAGTTAAAA GTGGTG CCAT CACCAC GATCCACTCTGCGAT Shal_0845 1051215 - 1052234 + | erythrose 4-phosphate dehydrogenase Shal_0846 1052725 - 1053900 + | phosphoglycerate kinase TERM 1137 1054053 - 1054022 - f 100 -16 -2.6563 | opp_overlap 1054029, overlap 1054019 1054018 1054029 GCCGCCAATAATTTA GCGATAACGCTTAC GATA GAAAGCGTTATCGC AGCTGTGAAAACAGA Shal_0847 1054258 - 1055322 + | fructose-1,6-bisphosphate aldolase TERM 1138 1055380 - 1055361 - f 93 -7.9 -5.4111 | opp_overlap 1055361, overlap 1055352 AAGAACGATAAAAAA TACCTGC CAACGT GCAGGTA TTTTTTTGCCTGAAA TERM 1139 1055361 - 1055380 + F 93 -7.9 -5.47218 | opp_overlap 1055361 1055352 AAGAACGATAAAAAA TACCTGC CAACGT GCAGGTA TTTTTTTGCCTGAAA Shal_0848 1055533 - 1056273 + | hypothetical protein TERM 1140 1056352 - 1056368 + F 84 -2.2 -5.86609 | ATGTTGTAAAGAAAA GGTGTC GCTTA GATGCC TTTTTGTTTTTTTAC Shal_0849 1056605 - 1057342 + | putative transcriptional regulator, CadC TERM 1141 1057388 - 1057402 + G 84 -8.6 -4.65494 | TAAGACGACGCCAAT GTTAGC AAC GCTAAC TTTTATATGTGGTTT Shal_0850 1057347 - 1057877 + | hypothetical protein Shal_0851 1057988 - 1059427 + | hypothetical protein Shal_0852 1061679 - 1059460 - | putative diguanylate cyclase Shal_0853 1062583 - 1061975 - | radical SAM domain-containing protein TERM 1142 1062696 - 1062726 + r 83 -12.7 -2.84586 | opp_overlap 1062702, overlap 1062702 TCATCTAAGATGCAT TAAAAAGGGAGGC TAAAT GCCTCCCTTTTTC TACTTGCCTTTTCGA TERM 1143 1062720 - 1062702 - R 100 -11.7 -4.76644 | opp_overlap 1062696 1062702 AAGATGCATTAAAAA GGGAGGC TAAAT GCCTCCC TTTTTCTACTTGCCT TERM 1144 1062702 - 1062720 + r 100 -11.7 -4.98857 | opp_overlap 1062702, overlap 1062696 AAGATGCATTAAAAA GGGAGGC TAAAT GCCTCCC TTTTTCTACTTGCCT Shal_0854 1065929 - 1062777 - | acriflavin resistance protein Shal_0855 1067158 - 1065929 - | RND family efflux transporter MFP subunit TERM 1145 1067122 - 1067139 + g 86 -2.7 -5.67711 | overlap 1067122 1067123 GAATAAAGAGAGGCG TCATTCT CCGA AGGATGG TTTTTATTTTATTTA TERM 1146 1067646 - 1067657 + G 71 -3.6 -4.75404 | CTATGCACACCTGTT GCCG ATGG TGGC TTTTTAATCGCATTT Shal_0856 1067457 - 1068047 + | hypothetical protein TERM 1147 1068056 - 1068083 + T 83 -12.8 -2.51547 | opp_overlap 1068061, overlap 1068061 TGCGTAATGGCGATA AAAAAGGCCACG TAAA CGTGGCCTTTTA ATGTTAATGTCGAAA TERM 1148 1068078 - 1068061 - T 100 -12.7 -5.25803 | opp_overlap 1068056 1068061 AATGGCGATAAAAAA GGCCACG TAAA CGTGGCC TTTTAATGTTAATGT TERM 1149 1068061 - 1068078 + T 100 -12.7 -4.45399 | opp_overlap 1068061, overlap 1068056 AATGGCGATAAAAAA GGCCACG TAAA CGTGGCC TTTTAATGTTAATGT Shal_0857 1069348 - 1068113 - | ATP-dependent RNA helicase SrmB TERM 1150 1068596 - 1068608 + g 76 -9.1 -3.69534 | opp_overlap 1068596 1068595, overlap 1068594 CTTAACGAAGACAAT GGTGC GCT GCACC TCTTCTTGTTTTAAC Shal_0858 1070158 - 1069418 - | methyltransferase small TERM 1151 1070940 - 1070903 - g 83 -9.3 -4.20354 | overlap 1070906 AAGCGAACGGTAAAA TAATGCAATTGCTGC CTCCCATC GCTGCAACTGCATTA GCCGTCTCAATTTTC TERM 1152 1070937 - 1070906 - g 72 -6.6 -4.21933 | overlap 1070903 CGAACGGTAAAATAA TGCAATTGCTGC CTCCCATC GCTGCAACTGCA TTAGCCGTCTCAATT Shal_0859 1070680 - 1072023 + | branched-chain amino acid transport system II carrier protein TERM 1153 1072126 - 1072098 - f 72 -10.3 -2.6062 | opp_overlap 1072101, overlap 1072097 1072095 TCGATGACATAATAT TGAGGCGATGCTT ATA AAGCATCGCCTTT TTTGTTTAAAGGCAG TERM 1154 1072101 - 1072123 + F 100 -16.4 -5.63517 | opp_overlap 1072098 1072097 1072095 ATGACATAATATTGA GGCGATGCTT ATA AAGCATCGCC TTTTTTGTTTAAAGG Shal_0860 1072501 - 1073403 + | tyrosine recombinase XerD Shal_0861 1073700 - 1074428 + | thiol:disulfide interchange protein DsbC TERM 1155 1074497 - 1074468 - f 83 -12.3 -2.58663 | opp_overlap 1074474, overlap 1074474 ATTGAGTCTGAGAAG CAAAAAGGTGAGC CTAG GCTCACCTTTTTT GTGCCCCTTTGCCAG TERM 1156 1074491 - 1074474 - f 95 -11.3 -4.93365 | opp_overlap 1074474, overlap 1074468 TCTGAGAAGCAAAAA GGTGAGC CTAG GCTCACC TTTTTTGTGCCCCTT TERM 1157 1074474 - 1074491 + F 100 -11.3 -5.25803 | opp_overlap 1074474 1074468 TCTGAGAAGCAAAAA GGTGAGC CTAG GCTCACC TTTTTTGTGCCCCTT TERM 1158 1076016 - 1076032 + G 83 -13.7 -2.70932 | opp_overlap 1076012 1076010 GTGAGCTAAGATCTG CTGGCCC GTG GGGCCAG TCATTCCCGGAGCCG Shal_0862 1074563 - 1076287 + | single-stranded-DNA-specific exonuclease RecJ TERM 1159 1076309 - 1076329 + T 95 -9 -5.45802 | AGTAGGGATTGTAGA GGGGTGCA CTGGT TGCATCCC TTTTTGTTTTCAGCC Shal_0863 1076966 - 1076487 - | AsnC family transcriptional regulator Shal_0864 1077194 - 1078507 + | hypothetical protein TERM 1160 1078571 - 1078604 + F 93 -9.6 -5.04601 | AAGTTAGAATTTTAA GCCAAGTCGGTACT CAATTA AGAGTCGACTTGGC TTTTTAGTTTCTCGA Shal_0865 1079312 - 1080640 + | serine transporter TERM 1161 1080709 - 1080664 - f 73 -10.1 -2.84801 | gap 2, opp_overlap 1080676, overlap 1080676 1080707 TAGCTTTAAATAGCA GGCC-ATAAAAAA-CCGATGC ATAACA GCATCGGTTTTTTTATAAGCC AATGATGACCCATTA TERM 1162 1080695 - 1080676 - f 93 -9.3 -5.26316 | opp_overlap 1080676, overlap 1080664 GCAGGCCATAAAAAA CCGATGC ATAACA GCATCGG TTTTTTTATAAGCCA TERM 1163 1080676 - 1080695 + F 100 -9.3 -5.60993 | opp_overlap 1080676 1080664 GCAGGCCATAAAAAA CCGATGC ATAACA GCATCGG TTTTTTTATAAGCCA Shal_0866 1081339 - 1081836 + | hypothetical protein TERM 1164 1082308 - 1082298 - T 73 -8.2 -3.84246 | GTTTCAAGGATGAAA CCGC AGA GCGG CCAAGGAGGGCTTTA Shal_0867 1083851 - 1082541 - | FAD dependent oxidoreductase Shal_0868 1085299 - 1084262 - | AraC family transcriptional regulator TERM 1165 1084919 - 1084902 - G 77 -3.5 -5.26119 | gap 1, overlap 1084905 GCGGCAAAAAGAAAA CAGGCATT ATC AATGC-TG ACCAGTGTCACTCCC Shal_0869 1085427 - 1086041 + | lysine exporter protein LysE/YggA TERM 1166 1086245 - 1086235 - T 71 -4 -4.88405 | AACGCCTAAATAAAA TTTG ATG CAAA AAACAATAAAGCCAC TERM 1167 1086280 - 1086249 - T 100 -12.4 -5.09225 | opp_overlap 1086256, overlap 1086252 ATTTGATGCAAAAAA CAATAAAGCCACTC AAAC GAGTGGCTTTAGCG ATGGTGGAAAGCTTC TERM 1168 1086277 - 1086252 - T 100 -14.9 -4.64763 | opp_overlap 1086256, overlap 1086249 TGATGCAAAAAACAA TAAAGCCACTC AAAC GAGTGGCTTTA GCGATGGTGGAAAGC TERM 1169 1086256 - 1086273 + T 88 -11.3 -3.58343 | opp_overlap 1086252 1086249 GCAAAAAACAATAAA GCCACTC AAAC GAGTGGC TTTAGCGATGGTGGA TERM 1170 1086337 - 1086321 - T 74 -3.8 -5.055 | opp_overlap 1086321 GTAAGGCTCAAAAAA CAATTA ATAAG TAATTG TTTTAACGCCGTCAG Shal_0870 1086986 - 1086324 - | ribose-5-phosphate isomerase A TERM 1171 1086943 - 1086959 + g 84 -5 -5.40004 | opp_overlap 1086943 TCTACGTACTGAAGA GCAGCC CATCC GGCAGC TTTTTTCATTTCATC Shal_0871 1087267 - 1088211 + | hypothetical protein Shal_0872 1088255 - 1089388 + | endonuclease/exonuclease/phosphatase Shal_0873 1090181 - 1089681 - | MORN repeat-containing protein Shal_0874 1090389 - 1092155 + | alkaline phosphatase TERM 1172 1092199 - 1092224 + F 100 -10.5 -5.55664 | gap 1, opp_overlap 1092199 1092202 TTCACTGGTTTTAAA TAAGGGCTG-CC GTA GGACGGCCCTTA TTTTTTTAGTGGTAG TERM 1173 1092224 - 1092199 - f 77 -9.7 -3.53811 | opp_overlap 1092199, overlap 1092202 TTCACTGGTTTTAAA TAAGGGCTGCC GTAG GACGGCCCTTA TTTTTTTAGTGGTAG Shal_0875 1092602 - 1093162 + | phosphoribosyltransferase TERM 1174 1093204 - 1093229 + T 77 -10.5 -3.35597 | opp_overlap 1093209, overlap 1093209 GCTTGAGCAAGCATT AAAAAGCCACC GACA GGTGGCTTTTG TGTTTAGAGCCTAGA TERM 1175 1093209 - 1093224 + T 93 -10.4 -4.78848 | opp_overlap 1093209, overlap 1093204 AGCAAGCATTAAAAA GCCACC GACA GGTGGC TTTTGTGTTTAGAGC TERM 1176 1093224 - 1093209 - T 93 -10.4 -4.81685 | opp_overlap 1093209 1093204 AGCAAGCATTAAAAA GCCACC GACA GGTGGC TTTTGTGTTTAGAGC Shal_0876 1093731 - 1093519 - | hypothetical protein Shal_0877 1096645 - 1093976 - | aminopeptidase N TERM 1177 1096673 - 1096684 + r 73 -7.2 -4.12554 | opp_overlap 1096662, overlap 1096666 AATATTAAACCCAGC GGGC TTTA GCCC TTATTATTCTATTTA TERM 1178 1096884 - 1096868 - R 100 -9.4 -5.4833 | opp_overlap 1096868 TGAGCCAATAAAAAA GCCAGC GTACT GCTGGC TTAATTACTGATGGG TERM 1179 1096868 - 1096884 + r 77 -10.1 -3.41693 | opp_overlap 1096868 TGAGCCAATAAAAAA GCCAGCG TAC TGCTGGC TTAATTACTGATGGG Shal_0878 1097520 - 1096915 - | membrane lipoprotein lipid attachment site Shal_0879 1098899 - 1097532 - | TPR repeat-containing protein TERM 1180 1098330 - 1098344 + g 72 -5.6 -4.39696 | opp_overlap 1098315, overlap 1098315 1098321 1098332 GCTGGTGGTTGTGCC CGCAGC CTT GCTGAG TTTATTCATTTCGGC Shal_0880 1099436 - 1099194 - | SlyX family protein TERM 1181 1100031 - 1100017 - g 72 -5.6 -4.44355 | GAAGCGCAAAAAGAA GCCTAC AGC GTTGGC GCATCAATTGGTACC TERM 1182 1100243 - 1100261 + G 83 -8.8 -4.21974 | opp_overlap 1100241 1100243, overlap 1100251 TGTTGGCAGAGAAGA GCCTAGCT GAA AGCCAGGC TTTCTTAGATGCTAA TERM 1183 1100261 - 1100243 - g 79 -11 -3.31726 | opp_overlap 1100243 1100251, overlap 1100241 TGTTGGCAGAGAAGA GCCTAGCT GAA AGCCAGGC TTTCTTAGATGCTAA Shal_0881 1099894 - 1100664 + | peptidylprolyl isomerase FKBP-type TERM 1184 1100686 - 1100716 + T 100 -16.4 -3.26596 | opp_overlap 1100693, overlap 1100693 CGTCAACGATTGAAC TGAAAAAGGACGCA ATA TGCGTCCTTTTTTA TTGGCTTGATTTAAG TERM 1185 1100693 - 1100709 + T 100 -12.3 -5.5074 | opp_overlap 1100693, overlap 1100686 GATTGAACTGAAAAA GGACGCA ATA TGCGTCC TTTTTTATTGGCTTG TERM 1186 1100709 - 1100693 - T 100 -12.3 -4.75174 | opp_overlap 1100693 1100686 GATTGAACTGAAAAA GGACGCA ATA TGCGTCC TTTTTTATTGGCTTG Shal_0882 1102059 - 1100734 - | phosphoesterase PA-phosphatase related TERM 1187 1102086 - 1102098 + H 83 -4.9 -5.28942 | TTGTAATAAATTTTG TTGAT TGT ATCAA TTTTTGTTTCGACTG Shal_0883 1102238 - 1102609 + | hypothetical protein TERM 1188 1102677 - 1102648 - T 100 -13.1 -3.91541 | gap 1, opp_overlap 1102656, overlap 1102649 1102656 CGAGCAAATTAAGAA CGAAAAAAGCAGCC TTT GGCTGCTTTTTT-G ATCTAATCGTCTATC TERM 1189 1102677 - 1102649 - T 91 -13.3 -2.94202 | opp_overlap 1102656, overlap 1102648 1102656 GAGCAAATTAAGAAC GAAAAAAGCAGCC TTT GGCTGCTTTTTTG ATCTAATCGTCTATC TERM 1190 1102656 - 1102670 + T 100 -11.4 -5.23316 | opp_overlap 1102648 1102649 1102656 TTAAGAACGAAAAAA GCAGCC TTT GGCTGC TTTTTTGATCTAATC TERM 1191 1102670 - 1102656 - T 100 -11.4 -5.37865 | opp_overlap 1102656, overlap 1102648 1102649 TTAAGAACGAAAAAA GCAGCC TTT GGCTGC TTTTTTGATCTAATC Shal_0884 1103336 - 1102701 - | two component LuxR family transcriptional regulator Shal_0885 1105141 - 1103429 - | nitrate/nitrite sensor protein NarQ TERM 1192 1103653 - 1103671 + g 71 -3.8 -4.75309 | overlap 1103655 GGCAACTGATGTGGA TATGCTTG GCG CTAGCATG TTTTATTGCGTTTAA TERM 1193 1104761 - 1104745 - G 76 -5.1 -4.91109 | overlap 1104746 TTTCGAGTACAAAAA GGTCGAT GGT ATCGACA AAATCTTTTAACGCT TERM 1194 1104921 - 1104933 + g 76 -4.9 -4.79451 | GAGTTAAGTGTATTT TCAAA CTC TTTGA TTTTATCTTTGGCCT TERM 1195 1105084 - 1105066 - G 74 -6 -4.63527 | TGATGATGGCAAAAA TTGCCAAG CCA CTCGACAA TAAAATGAGTGTGAG TERM 1196 1105430 - 1105406 - g 72 -2.7 -4.92777 | overlap 1105408 AACATTAACTAAAAA GTCTTTTGCAC TGA GTGCAATCGTC GCTGCAAGTTTAATG Shal_0886 1105383 - 1106786 + | cytochrome c nitrite reductase TERM 1197 1106849 - 1106864 + T 100 -10.4 -6.07969 | opp_overlap 1106849 GTGTTTAGAATTGAA GCCCTC CTAG GAGGGC TTTTTTTTGCTTTTA TERM 1198 1106864 - 1106849 - T 75 -10.4 -3.23274 | opp_overlap 1106849 GTGTTTAGAATTGAA GCCCTC CTAG GAGGGC TTTTTTTTGCTTTTA Shal_0887 1107419 - 1106877 - | isochorismatase hydrolase Shal_0888 1107683 - 1108021 + | nitrogen regulatory protein P-II TERM 1199 1108566 - 1108580 + G 72 -9.2 -3.64599 | overlap 1108574 TTGTGCATATGGCTG GCGCTG CGG CGGCGC TTTCAGGTGTGCTGC Shal_0889 1108034 - 1109284 + | Rh family protein/ammonium transporter TERM 1200 1109348 - 1109323 - f 81 -11.9 -2.74244 | opp_overlap 1109323, overlap 1109320 1109319 CATGATATAAATTCA GGGCTTATACC GTTC GGTATAGGCCC TTCTTTTGGCCTAAA TERM 1201 1109323 - 1109348 + F 100 -14.1 -4.19746 | opp_overlap 1109323 1109320 1109319 CATGATATAAATTCA GGGCTTATACC GTTC GGTATAGGCCC TTCTTTTGGCCTAAA Shal_0890 1109585 - 1109851 + | hypothetical protein TERM 1202 1110173 - 1110183 + G 80 -6.8 -4.56775 | AGCGGGAACTGATGC GCTC GAA GAGC TTTTTGCAGCAAAAT TERM 1203 1110239 - 1110251 + G 70 -4.7 -4.4078 | opp_overlap 1110228 CAAACTACATTAATG CAGCC GAT GGCGG TTTTCGTTACGCCGA TERM 1204 1110741 - 1110724 - g 70 -9.9 -3.01422 | opp_overlap 1110721 1110721, overlap 1110721 TATCGCTATAAAGGA CTCAGCT CGCA AGCTGAG GCACTTTATCAATAC Shal_0891 1109935 - 1111137 + | TPR repeat-containing protein TERM 1205 1111432 - 1111449 + F 70 -3.4 -4.84582 | TTTAGTCCGCCTATT TGTTGG TTTGCT CCAGCA TTTTATATATTTTTT TERM 1206 1112193 - 1112177 - g 78 -6.6 -4.56775 | AGTTGGTTTCAAAAA TGGTAC AGATG GTACCA TCAAGGTGGCTATTG Shal_0892 1111617 - 1112672 + | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 1207 1112713 - 1112683 - T 100 -12.1 -4.91712 | gap 1, opp_overlap 1112691, overlap 1112691 CTTAATTGATAAAAA CAAAAAAAGGAGGC ATTA GCCTCC-TTTTTTG ATCACTTACTTAGTG TERM 1208 1112691 - 1112706 + T 100 -10.4 -5.18357 | opp_overlap 1112691 1112683 ATAAAAACAAAAAAA GGAGGC ATTA GCCTCC TTTTTTGATCACTTA TERM 1209 1112706 - 1112691 - T 100 -10.4 -6.23317 | opp_overlap 1112691, overlap 1112683 ATAAAAACAAAAAAA GGAGGC ATTA GCCTCC TTTTTTGATCACTTA Shal_0893 1112853 - 1112737 - | hypothetical protein TERM 1210 1114793 - 1114811 + G 71 -9.6 -3.11955 | ACCCATTTTGGTATT TGATGAGG CGA CCTCATCG TTAGATAGTCATTCT Shal_0894 1113255 - 1115036 + | ABC transporter related Shal_0895 1115533 - 1115402 - | hypothetical protein Shal_0896 1116145 - 1116894 + | oxidoreductase FAD/NAD(P)-binding subunit Shal_0897 1117103 - 1118110 + | extracellular solute-binding protein TERM 1211 1118208 - 1118222 + F 93 -8.6 -5.18715 | opp_overlap 1118208 CACTGTTTCAGTTAA CCTATC TTA GATAGG TTTTCTTGTTTTTAT TERM 1212 1118625 - 1118643 + G 93 -8.8 -4.74103 | TTATGCAGGTCCTGT GCAGCGTA GCT TACGCAGC TTTTTCGGTTGGCAG Shal_0898 1118278 - 1119909 + | binding-protein-dependent transport systems inner membrane component TERM 1213 1120709 - 1120692 - g 80 -9.9 -3.92659 | TTGGCAAAATTGAAA GCGAAAG TTTA CTTTCGC AACCCATCAGCACCC Shal_0899 1119911 - 1120939 + | ABC transporter related Shal_0900 1121154 - 1122086 + | Dyp-type peroxidase family protein TERM 1214 1122100 - 1122140 + T 73 -10 -2.87211 | gap 1, opp_overlap 1122091 1122094 1122105 1122112, overlap 1122105 1122112 AATTAAGACTTTTTA GCCAATAAAA-AACGCACT GTAT GGTGCGTTTTTTTATTGGG TGTATGAAAGCGAAT TERM 1215 1122127 - 1122112 - T 91 -6.1 -5.4833 | opp_overlap 1122105 1122100 1122112, overlap 1122105 TTAGCCAATAAAAAA CGCAC TGTATG GTGCG TTTTTTTATTGGGTG TERM 1216 1122112 - 1122127 + T 100 -6.8 -5.8187 | opp_overlap 1122112 1122105, overlap 1122105 1122100 TTAGCCAATAAAAAA CGCACT GTAT GGTGCG TTTTTTTATTGGGTG Shal_0901 1122625 - 1122155 - | cupin 2 domain-containing protein TERM 1217 1122730 - 1122704 - R 85 -12.6 -3.10522 | ACGCTATTCAATATA TTGTATAAAACA GAG TGTTTTATACAA CGAGCGTTAAGGTAA TERM 1218 1122857 - 1122834 - R 100 -10.4 -5.46276 | gap 1, opp_overlap 1122834 AATAGAGATAAAAAA TGCTGTAGCCC TGA GGG-TACAGCA TTTAATAAGCTAGTC TERM 1219 1122834 - 1122857 + r 80 -10.4 -3.75169 | gap 1, opp_overlap 1122834 AATAGAGATAAAAAA TGCTGTAGCCC TGA GGG-TACAGCA TTTAATAAGCTAGTC Shal_0902 1123360 - 1122890 - | arginine repressor Shal_0903 1123713 - 1124648 + | malate dehydrogenase TERM 1220 1124677 - 1124705 + T 100 -17.7 -4.18161 | opp_overlap 1124677 1124684, overlap 1124684 CTTTGTGGGTCAAAA TAAAAAAGGAGCC TTA GGCTCCTTTTTTA TTTTCAACATTTATC TERM 1221 1124705 - 1124677 - T 100 -17.7 -4.07568 | opp_overlap 1124677 1124684, overlap 1124684 CTTTGTGGGTCAAAA TAAAAAAGGAGCC TTA GGCTCCTTTTTTA TTTTCAACATTTATC TERM 1222 1124684 - 1124698 + T 100 -11.4 -5.79595 | opp_overlap 1124677 1124684, overlap 1124677 GGTCAAAATAAAAAA GGAGCC TTA GGCTCC TTTTTTATTTTCAAC TERM 1223 1124698 - 1124684 - T 100 -11.4 -5.79595 | opp_overlap 1124684 1124677, overlap 1124677 GGTCAAAATAAAAAA GGAGCC TTA GGCTCC TTTTTTATTTTCAAC Shal_0904 1125729 - 1124758 - | polyprenyl synthetase TERM 1224 1125531 - 1125543 + g 71 -7.7 -3.97947 | opp_overlap 1125531 TTGCTGCTAATTTAA GGTGA GAA TCACC TTTATAGTCAATGGC Shal_0905 1126013 - 1126324 + | 50S ribosomal protein L21 Shal_0906 1126340 - 1126594 + | 50S ribosomal protein L27 TERM 1225 1126620 - 1126646 + F 93 -10.8 -5.055 | opp_overlap 1126618 1126624, overlap 1126624 AGCTAATAATTAATA TTAAGCCCCGCC ATT GGTGGGGCTTTG TTTTTTCAAAATTAA TERM 1226 1126624 - 1126642 + F 100 -13.8 -5.04249 | opp_overlap 1126618 1126624, overlap 1126620 AATAATTAATATTAA GCCCCGCC ATT GGTGGGGC TTTGTTTTTTCAAAA TERM 1227 1126642 - 1126624 - f 85 -11.6 -3.4382 | opp_overlap 1126624 1126620, overlap 1126618 AATAATTAATATTAA GCCCCGCC ATT GGTGGGGC TTTGTTTTTTCAAAA Shal_0907 1126732 - 1127895 + | GTPase ObgE TERM 1228 1128281 - 1128310 + G 76 -4.3 -5.0809 | overlap 1128283 CCCTGCTAGATATGT CGTGCCTATGATA GGGT TATCATGTGCAAG TTTTTGTCATTTGTT Shal_0908 1127925 - 1128683 + | hypothetical protein Shal_0909 1128683 - 1129156 + | hypothetical protein Shal_0910 1129261 - 1129743 + | dihydrofolate reductase TERM 1229 1129802 - 1129782 - f 100 -6.1 -5.88565 | opp_overlap 1129782 1129782 1129784, overlap 1129784 TGTATAACAAAAAAA GAGCGCTAC TAG ATAGCGCTA CTTTTCTAATAAATA TERM 1230 1129800 - 1129784 - f 87 -8.7 -4.57921 | opp_overlap 1129784 1129782 1129782, overlap 1129782 TATAACAAAAAAAGA GCGCTAC TAG ATAGCGC TACTTTTCTAATAAA Shal_0911 1129843 - 1130238 + | hypothetical protein TERM 1231 1130262 - 1130280 + T 95 -8.9 -5.46629 | opp_overlap 1130261 1130262 AAGCGTATCTAAAAT TACTGGG CCTGT CCCAGTA TTTTTTTACCCTATT TERM 1232 1130280 - 1130262 - T 70 -8.9 -3.11341 | opp_overlap 1130262, overlap 1130261 AAGCGTATCTAAAAT TACTGGG CCTGT CCCAGTA TTTTTTTACCCTATT TERM 1233 1130356 - 1130342 - T 86 -7.1 -5.12068 | opp_overlap 1130342 1130340 1130336, overlap 1130336 TATAGGCAATAAAAA GAGGC GCTAA GCCTC TATTTATATTGAACT Shal_0912 1132429 - 1130408 - | methyl-accepting chemotaxis sensory transducer Shal_0913 1133363 - 1132530 - | diadenosine tetraphosphatase Shal_0914 1133777 - 1133397 - | ApaG TERM 1234 1133586 - 1133596 + g 74 -5.4 -4.60924 | TACTACGCCCGTGCC GTGA ACT TCAC TTTTTCGCCCATTTG TERM 1235 1133893 - 1133907 + r 78 -7.1 -4.36343 | opp_overlap 1133893 AAGGGCATAAAAAAA GGGCA GTTAA TGCCC TTTATTAGTTGCTTA TERM 1236 1133907 - 1133893 - R 100 -7.1 -5.63504 | opp_overlap 1133893 AAGGGCATAAAAAAA GGGCA GTTAA TGCCC TTTATTAGTTGCTTA Shal_0915 1134740 - 1133937 - | dimethyladenosine transferase Shal_0916 1135740 - 1134757 - | 4-hydroxythreonine-4-phosphate dehydrogenase TERM 1237 1135674 - 1135638 - G 100 -23.9 -4.00038 | opp_overlap 1135641, overlap 1135641 CAGGATCAGCACAAA CGACTAGCTCAGCAGGC CAA GCCTGCTGAGCTAGTTG TATCACTAAATCGGG TERM 1238 1135641 - 1135671 + g 100 -24.2 -3.524 | opp_overlap 1135638 1135641 GATCAGCACAAACGA CTAGCTCAGCAGGC CAA GCCTGCTGAGCTAG TTGTATCACTAAATC TERM 1239 1135671 - 1135641 - G 100 -24.2 -3.04836 | opp_overlap 1135641, overlap 1135638 GATCAGCACAAACGA CTAGCTCAGCAGGC CAA GCCTGCTGAGCTAG TTGTATCACTAAATC Shal_0917 1137050 - 1135746 - | SurA domain-containing protein Shal_0918 1139502 - 1137178 - | organic solvent tolerance protein TERM 1240 1139413 - 1139435 + g 76 -9.1 -3.6869 | opp_overlap 1139409 AGGTTCAACTACGCA CTGCGACGC AAGTG GCGTCACAG TTTCGGGTTCGTCTG Shal_0919 1139658 - 1140668 + | aminoglycoside phosphotransferase Shal_0920 1140669 - 1141337 + | nucleotidyl transferase Shal_0921 1141337 - 1142116 + | Dna-J like membrane chaperone protein Shal_0922 1142149 - 1142760 + | hypothetical protein Shal_0923 1142831 - 1143784 + | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding TERM 1241 1143889 - 1143841 - T 82 -8.4 -4.30719 | gap 1, opp_overlap 1143844, overlap 1143844 GGGTCTTATAACAAA TAAGCCTCAAACTTAACGCTAAA TCTG TTTAGCAA-AAGTCTGAGGCTTT TTATTGGCAAGTTTA TERM 1242 1143886 - 1143844 - T 89 -10.1 -4.27512 | gap 1, opp_overlap 1143844, overlap 1143841 TCTTATAACAAATAA GCCTCAAACTTAACGCTAAA TCTG TTTAGCAA-AAGTCTGAGGC TTTTTATTGGCAAGT TERM 1243 1143844 - 1143886 + T 81 -5.7 -5.06816 | gap 1, opp_overlap 1143841 1143844 TCTTATAACAAATAA GCCTCAAACTTAACGCTAAA TCTG TTTAGCAA-AAGTCTGAGGC TTTTTATTGGCAAGT Shal_0924 1145081 - 1143906 - | phosphoribosylglycinamide formyltransferase 2 Shal_0925 1145386 - 1145772 + | hypothetical protein Shal_0926 1145774 - 1146910 + | secretion protein HlyD family protein TERM 1244 1146978 - 1146993 + F 82 -6.1 -4.85782 | opp_overlap 1146978 GACAATTGATATAAA GGGAC CTAGGC GTCCC TTTCTTTTTGGGAAA Shal_0927 1147051 - 1148520 + | ATPase central domain-containing protein TERM 1245 1148565 - 1148591 + T 86 -11.7 -3.29461 | overlap 1148569 ACAAGTATTTAGTGT TGAACCGAACG AGTGG TGTTCGGTTCA TTATAGGGGAAATTA Shal_0928 1149161 - 1148604 - | hypothetical protein Shal_0929 1149279 - 1149590 + | hypothetical protein Shal_0930 1150845 - 1149577 - | histidine kinase TERM 1246 1150371 - 1150382 + g 73 -4.4 -4.77986 | CAAACTCTTTGGTGG CCTT GCGC AAGG TTTTTAGATCTTTCG TERM 1247 1150727 - 1150743 + g 88 -8.7 -4.82154 | opp_overlap 1150727 GCCAGAGCGACTAAA GGTGCAT CGA GTGCACC TTTTTCGTCTACGTT TERM 1248 1150846 - 1150836 - G 75 -3.2 -5.11112 | AAAGGCTAATAAAAA GACG TTT CATC TTAACCGGTTAGCAG Shal_0931 1151577 - 1150864 - | two component transcriptional regulator Shal_0932 1151942 - 1151577 - | hypothetical protein Shal_0933 1152874 - 1151999 - | MltA-interacting MipA family protein Shal_0934 1153124 - 1153660 + | GCN5-related N-acetyltransferase Shal_0935 1154142 - 1153657 - | hypothetical protein Shal_0936 1154279 - 1154614 + | hypothetical protein Shal_0937 1155542 - 1154658 - | UspA domain-containing protein TERM 1249 1156255 - 1156271 + r 74 -6.5 -4.32857 | GCAAAATTAACCATC CCCTGTC TCC GACAAGG TTTCTATTTAGGCAA Shal_0938 1157018 - 1156599 - | glyoxalase/bleomycin resistance protein/dioxygenase TERM 1250 1156802 - 1156788 - G 73 -7.8 -4.04174 | opp_overlap 1156788, overlap 1156784 GGTGACATAAGCAAA GTGGGC TAA ACCCAC TTGGTGCCCGCTTAA Shal_0939 1157718 - 1157110 - | NADPH-dependent FMN reductase TERM 1251 1157500 - 1157515 + g 79 -7.6 -4.49556 | opp_overlap 1157499 AGGTGTGATTAATAC TAAGGC ATCA GCCTTA TTTATTTGCTGAGAA Shal_0940 1157856 - 1158485 + | putative transcriptional regulator Shal_0941 1158492 - 1159196 + | pseudouridine synthase Shal_0942 1159695 - 1160297 + | GPR1/FUN34/yaaH family protein TERM 1252 1160331 - 1160370 + T 87 -12.4 -3.33169 | opp_overlap 1160343, overlap 1160343 TTGATATAAGCAATT GACGTAAAAAAAGCTGAC CTAG GTCAGCTTTTTTTGTATC TGATTTTTACTCTTT TERM 1253 1160358 - 1160343 - T 95 -9 -5.47821 | opp_overlap 1160331 1160343 ATTGACGTAAAAAAA GCTGAC CTAG GTCAGC TTTTTTTGTATCTGA TERM 1254 1160343 - 1160358 + T 100 -9 -5.76633 | opp_overlap 1160343, overlap 1160331 ATTGACGTAAAAAAA GCTGAC CTAG GTCAGC TTTTTTTGTATCTGA Shal_0943 1161940 - 1160408 - | major facilitator transporter Shal_0944 1163056 - 1162367 - | LrgB family protein Shal_0945 1163538 - 1163053 - | LrgA family protein TERM 1255 1163950 - 1163964 + G 71 -7.8 -3.9122 | overlap 1163950 TTAGGCTTGGCGCCC CTTGGC AGC GCCGAG TTATTTGCCCCGGTG TERM 1256 1164414 - 1164431 + G 73 -11.3 -2.63596 | CGATGCGGTGGTCAA TGTGCCG CTTG CGGCACA TGATCTCAGGTGGGA Shal_0946 1163647 - 1164549 + | LysR family transcriptional regulator Shal_0947 1164942 - 1164778 - | hypothetical protein TERM 1257 1164897 - 1164885 - G 84 -4.7 -5.41143 | CACTTTTTAAAAAAA CCGCC ACA GGTGG TAGTAGAATCGCGAT Shal_0948 1165696 - 1165103 - | AMMECR1 domain-containing protein Shal_0949 1166483 - 1165674 - | hypothetical protein TERM 1258 1165718 - 1165737 + g 100 -15 -4.28548 | CGACTCGATTTTTGT CTCCGGCG GTGT CGCCGGAG TTTTGATAACTCAAT Shal_0950 1166557 - 1167666 + | radical SAM domain-containing protein Shal_0951 1170759 - 1167796 - | hypothetical protein TERM 1259 1168684 - 1168699 + g 72 -9 -3.52079 | ATGCACCTGCGTCAT GATGGC GCTT GCCATC TTCTCTGGCGTATTC TERM 1260 1170659 - 1170675 + g 73 -11.5 -2.64416 | opp_overlap 1170658, overlap 1170623 1170658 GGTGCTTGAGCTAAG GGCGGTG TTA CGCCGCC ATTATCATCGGAATC TERM 1261 1171060 - 1171075 + H 73 -6.8 -4.24948 | opp_overlap 1171060 1171057, overlap 1171061 TGGACAATTTAACTA TGCTGC AGCA GCAGCG TTTTACCTGTGGTAG TERM 1262 1171350 - 1171374 + G 72 -10.7 -2.77523 | overlap 1171348 1171346 GGGAGTCGATAGGCG AGCTGCATGCC CAA GGTATGCAGCA TAGTATTCGTGCGGG Shal_0952 1171157 - 1172878 + | methyl-accepting chemotaxis sensory transducer TERM 1263 1172974 - 1172956 - T 100 -14.6 -5.24796 | opp_overlap 1172956 TTGAGATAACAAAAA GGGCTGTC GAT GACAGCCC TTTTTTATGGGATAA TERM 1264 1172956 - 1172974 + T 100 -14.6 -5.26316 | opp_overlap 1172956 TTGAGATAACAAAAA GGGCTGTC GAT GACAGCCC TTTTTTATGGGATAA Shal_0953 1175929 - 1173014 - | valyl-tRNA synthetase Shal_0954 1176452 - 1175949 - | DNA polymerase III chi subunit HolC Shal_0955 1176681 - 1177922 + | DEAD/DEAH box helicase domain-containing protein Shal_0956 1179033 - 1177996 - | NADH:flavin oxidoreductase/NADH oxidase Shal_0957 1179218 - 1180126 + | LysR family transcriptional regulator TERM 1265 1180152 - 1180133 - T 89 -12.2 -3.75629 | opp_overlap 1180133 TATCGGTAAGCGAAA GCCAACAC AGAA GTGTTGGC TTTTCAGTTATTAAA TERM 1266 1180133 - 1180152 + T 95 -12.2 -4.36127 | opp_overlap 1180133 TATCGGTAAGCGAAA GCCAACAC AGAA GTGTTGGC TTTTCAGTTATTAAA TERM 1267 1180168 - 1180200 + T 83 -12.3 -2.6732 | opp_overlap 1180169 1180175 1180179, overlap 1180175 1180179 TTTTCAGTTATTAAA AGTAAAATAAAGCTA GGC TAGCTTTATTTTACC CTGTTTCAATTAAGA TERM 1268 1180199 - 1180169 - T 100 -15.8 -4.2828 | opp_overlap 1180168 1180175 1180179, overlap 1180175 1180179 TTTCAGTTATTAAAA GTAAAATAAAGCTA GGC TAGCTTTATTTTAC CCTGTTTCAATTAAG TERM 1269 1180193 - 1180175 - T 89 -9 -4.70319 | opp_overlap 1180168 1180175 1180179, overlap 1180169 1180179 TTATTAAAAGTAAAA TAAAGCTA GGC TAGCTTTA TTTTACCCTGTTTCA TERM 1270 1180175 - 1180193 + T 85 -9 -4.21827 | opp_overlap 1180175 1180169 1180179, overlap 1180168 1180179 TTATTAAAAGTAAAA TAAAGCTA GGC TAGCTTTA TTTTACCCTGTTTCA TERM 1271 1180189 - 1180179 - T 79 -5.4 -4.86613 | opp_overlap 1180175 1180168 1180179, overlap 1180175 1180169 TAAAAGTAAAATAAA GCTA GGC TAGC TTTATTTTACCCTGT TERM 1272 1180179 - 1180189 + T 75 -5.4 -4.67651 | opp_overlap 1180179 1180175 1180169, overlap 1180175 1180168 TAAAAGTAAAATAAA GCTA GGC TAGC TTTATTTTACCCTGT Shal_0958 1180743 - 1180210 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 1273 1180826 - 1180799 - R 70 -8.4 -3.34344 | opp_overlap 1180799 1180799 1180802, overlap 1180800 1180802 TTATCTGTTAATGAA GGACGAAGGCCG ATGA CGACCTTCATCA CTTACTTCAGTCAAA TERM 1274 1180825 - 1180800 - R 81 -11.9 -2.60392 | opp_overlap 1180799 1180799 1180802, overlap 1180799 1180802 TATCTGTTAATGAAG GACGAAGGCCG ATGA CGACCTTCATC ACTTACTTCAGTCAA Shal_0959 1181382 - 1180846 - | hypothetical protein Shal_0960 1181900 - 1181631 - | hypothetical protein TERM 1275 1183074 - 1183064 - g 85 -5.4 -5.28176 | opp_overlap 1183064 CTTACCGATAAAAAA TTGG TGA CCAA CTGTTTTATCATTCC Shal_0961 1182215 - 1183537 + | hypothetical protein TERM 1276 1183569 - 1183594 + T 84 -10.5 -3.93768 | opp_overlap 1183568 1183567 1183571, overlap 1183567 1183571 CGATAGTCTTAAACC TAGGTGAGTCA GTCT TGACTCACCTC TATTTTATTCCCGAT TERM 1277 1183571 - 1183592 + T 95 -13.1 -3.55261 | opp_overlap 1183568 1183567 1183571, overlap 1183569 1183567 ATAGTCTTAAACCTA GGTGAGTCA GTCT TGACTCACC TCTATTTTATTCCCG TERM 1278 1183592 - 1183571 - T 90 -13.1 -2.64981 | opp_overlap 1183571 1183569 1183567, overlap 1183568 1183567 ATAGTCTTAAACCTA GGTGAGTCA GTCT TGACTCACC TCTATTTTATTCCCG TERM 1279 1183781 - 1183803 + T 89 -12.1 -3.58343 | opp_overlap 1183781 GTTTGAAATAAAAAA GGCTAAACC AATGA GGTTTAGCC TTTCAAAGTCGTGGC TERM 1280 1183803 - 1183781 - T 100 -12.1 -5.63517 | opp_overlap 1183781 GTTTGAAATAAAAAA GGCTAAACC AATGA GGTTTAGCC TTTCAAAGTCGTGGC Shal_0962 1185340 - 1183832 - | leucyl aminopeptidase TERM 1281 1185498 - 1185486 - H 74 -6.3 -4.36914 | overlap 1185495 TTGTTGGTCACAAAA CTACT AAA AGTAG ACAGTCTACATGAAA TERM 1282 1185507 - 1185495 - H 74 -6.3 -4.43571 | overlap 1185486 ACAAAACTACTAAAA GTAGA CAG TCTAC ATGAAAGTTGTATTG Shal_0963 1185563 - 1186678 + | permease YjgP/YjgQ family protein TERM 1283 1187147 - 1187174 + G 78 -12.2 -2.62735 | opp_overlap 1187153, overlap 1187151 ATGGCGATCTATTTG TTAATATTGGCG GTGC CGCCGATATTAA TAATCTGCGCGATAT Shal_0964 1186675 - 1187733 + | permease YjgP/YjgQ family protein TERM 1284 1187827 - 1187800 - T 100 -15 -5.14563 | opp_overlap 1187800 GCGGTCATTAAAAAA GCCAATCAACAG ATTA CTGTCGATTGGC TTTTTTGTCGCATTA TERM 1285 1187800 - 1187827 + T 100 -12.8 -5.27923 | opp_overlap 1187800 GCGGTCATTAAAAAA GCCAATCAACAG ATTA CTGTCGATTGGC TTTTTTGTCGCATTA Shal_0965 1188410 - 1187886 - | RDD domain-containing protein Shal_0966 1188722 - 1188468 - | hypothetical protein Shal_0967 1189247 - 1188768 - | GCN5-related N-acetyltransferase TERM 1286 1189164 - 1189193 + g 77 -11.5 -3.27704 | opp_overlap 1189164, overlap 1189159 CAGCACTTCAAGTGA CTCGGGTTCTATC TGTG GATAGCACTCGAG TTGGATTTGCAAAAT TERM 1287 1189275 - 1189308 + r 95 -14.1 -3.24747 | AATAGGGGCGCTTAT TATTCCCATTAACAG AGAG CTGCTAATGGGAATA TTGATACTCTAGCGC Shal_0968 1190807 - 1189317 - | carboxypeptidase Taq TERM 1288 1189964 - 1190008 + g 72 -8.5 -3.737 | CACCGGCAGGTTGTC CGCGCCATGCTAGGGGTAAGC CCT GCTCATATTTAGCGTGGCCCG TTTCATGGACAATTC TERM 1289 1191031 - 1191048 + H 71 -4.1 -4.88293 | overlap 1191034 CATTTAAATTCAAGG TGAGCTC GCTT GAGCTGA TTTATTTTTACCGTT Shal_0969 1191313 - 1193136 + | peptidase S8 and S53 subtilisin kexin sedolisin TERM 1290 1193176 - 1193159 - T 100 -12.7 -4.3534 | opp_overlap 1193159 CCTCAAGTAGCAAAA GGCCTGC TGAT GCAGGCC TTTTTTATGTTTAAG TERM 1291 1193159 - 1193176 + T 100 -12.7 -5.56264 | opp_overlap 1193159 CCTCAAGTAGCAAAA GGCCTGC TGAT GCAGGCC TTTTTTATGTTTAAG Shal_0970 1193885 - 1193247 - | hypothetical protein TERM 1292 1194042 - 1194067 + r 79 -10.5 -3.54 | opp_overlap 1194047, overlap 1194047 TCTACTTTGTGATTA AAAAAGGCACC CAAT GGTGCCTTTTC TGTTTATAAAATAAT TERM 1293 1194047 - 1194062 + r 93 -10.4 -4.84918 | opp_overlap 1194047, overlap 1194042 TTTGTGATTAAAAAA GGCACC CAAT GGTGCC TTTTCTGTTTATAAA TERM 1294 1194062 - 1194047 - R 93 -10.4 -5.14563 | opp_overlap 1194047 1194042 TTTGTGATTAAAAAA GGCACC CAAT GGTGCC TTTTCTGTTTATAAA Shal_0971 1195399 - 1194101 - | DEAD/DEAH box helicase domain-containing protein TERM 1295 1194962 - 1194950 - G 73 -4.1 -4.77438 | ATCGAGTACTAAAAA GTCAA CAT TCGAC AAGCTTAAGTTACAG TERM 1296 1195549 - 1195570 + r 80 -10.1 -3.6279 | opp_overlap 1195551, overlap 1195551 GTAATTTCCATTAAA AAGCAGCGC CGGG GCGCTGCTG TTATTGAAGCGGTTT TERM 1297 1195551 - 1195568 + r 87 -12.7 -3.38991 | opp_overlap 1195551, overlap 1195549 AATTTCCATTAAAAA GCAGCGC CGGG GCGCTGC TGTTATTGAAGCGGT TERM 1298 1195568 - 1195551 - R 100 -12.7 -4.73388 | opp_overlap 1195551 1195549 AATTTCCATTAAAAA GCAGCGC CGGG GCGCTGC TGTTATTGAAGCGGT Shal_0972 1197382 - 1195595 - | peptidase M24 TERM 1299 1197836 - 1197847 + H 74 -4.4 -4.95302 | overlap 1197831 AGTCAAACCATAGAG CCTT GTTT AAGG TTTTATTGTATTTAA Shal_0974 1197894 - 1199111 + | peptidase M24 TERM 1300 1199292 - 1199306 + T 75 -10 -3.1733 | overlap 1199289 1199289 GACCCATTTGGCTAC GAAGCG TAA CGCTTC TAATTTTATGCCAAA TERM 1301 1199330 - 1199353 + T 100 -9.6 -5.3236 | opp_overlap 1199330 TGCCAAATAAAAAAA GCCCGAATGT TTAC GTATTCGGGC TTTTTTATGACTTAT TERM 1302 1199353 - 1199330 - T 100 -8.2 -5.95539 | opp_overlap 1199330 TGCCAAATAAAAAAA GCCCGAAT GTTTACGT ATTCGGGC TTTTTTATGACTTAT Shal_0975 1199849 - 1199379 - | peptidylprolyl isomerase FKBP-type TERM 1303 1200163 - 1200183 + G 73 -2.5 -5.12707 | TGGTTAAACTGAGAT CAATAGCGA ATG TCTCAATTG TTTTTTCAACTTTGC Shal_0976 1200147 - 1201217 + | OmpA/MotB domain-containing protein TERM 1304 1201810 - 1201784 - g 70 -9.4 -3.40611 | overlap 1201782 GCTACCGCAACAATA GAGTCCGCTGGA GAA TCAATCGGACTC GCAACAGGGGTTACT Shal_0977 1201220 - 1206244 + | Ig domain-containing protein TERM 1305 1206281 - 1206302 + T 80 -4.4 -5.30348 | opp_overlap 1206281, overlap 1206275 AGTTAAAATGAAAAA CGCAGC CGATTAATAA GCTGCG TTTTTATTATTACCT TERM 1306 1206302 - 1206281 - T 83 -6.5 -5.10154 | opp_overlap 1206275 1206281 AGTTAAAATGAAAAA CGCAGCCGA TTAA TAAGCTGCG TTTTTATTATTACCT Shal_0978 1206962 - 1206333 - | cold-shock DNA-binding domain-containing protein TERM 1307 1206445 - 1206433 - G 83 -10.5 -3.69092 | opp_overlap 1206432 1206433 AAGATGAATTTGAAA CGGCC CTT GGCCG ATTTATGCCTGAGCC TERM 1308 1206433 - 1206445 + g 73 -10.5 -2.94924 | opp_overlap 1206433, overlap 1206432 AAGATGAATTTGAAA CGGCC CTT GGCCG ATTTATGCCTGAGCC Shal_0979 1207372 - 1207079 - | ArsR family transcriptional regulator Shal_0980 1207975 - 1207484 - | hypothetical protein TERM 1309 1207775 - 1207790 + g 76 -2.5 -5.36441 | opp_overlap 1207753, overlap 1207752 1207745 AGTTTGAATATGATT GTGCA CGGCTT TGCGC TTTTTTATCTGGCAG Shal_0981 1208143 - 1209060 + | hypothetical protein TERM 1310 1209118 - 1209099 - T 86 -12.2 -3.37056 | opp_overlap 1209099 AGTACGTATTTACAA TGCCAGCT TACG AGCTGGCA TTTTTTTGGCTGTAG TERM 1311 1209099 - 1209118 + T 100 -12.2 -5.50499 | opp_overlap 1209099 AGTACGTATTTACAA TGCCAGCT TACG AGCTGGCA TTTTTTTGGCTGTAG Shal_0982 1209547 - 1209203 - | hypothetical protein TERM 1312 1209922 - 1209975 + r 76 -11.1 -2.60615 | opp_overlap 1209924 1209926 1209927 1209942, overlap 1209942 AAATAGTGCTCAAAC AACAGCTGCCAATAAAAAAACCGCC AGTT GGCGGTTTTTTTATTGGCAGGGAAA CTATTTAGGCAAGCT TERM 1313 1209972 - 1209924 - R 100 -21.4 -3.91984 | gap 1, opp_overlap 1209922 1209942, overlap 1209926 1209927 1209942 ATAGTGCTCAAACAA CAGCTGCCAATAAAAAAACCGCC AGTT GGCGGTTTTTTTATTGGCAGG-G AAACTATTTAGGCAA TERM 1314 1209971 - 1209926 - R 100 -25.1 -3.54755 | opp_overlap 1209922 1209942, overlap 1209924 1209927 1209942 AGTGCTCAAACAACA GCTGCCAATAAAAAAACCGCC AGTT GGCGGTTTTTTTATTGGCAGG GAAACTATTTAGGCA TERM 1315 1209970 - 1209927 - R 100 -28.6 -2.72371 | opp_overlap 1209922 1209942, overlap 1209926 1209924 1209942 GTGCTCAAACAACAG CTGCCAATAAAAAAACCGCC AGTT GGCGGTTTTTTTATTGGCAG GGAAACTATTTAGGC TERM 1316 1209942 - 1209955 + r 100 -9.5 -5.7946 | opp_overlap 1209927 1209926 1209924 1209942, overlap 1209922 CTGCCAATAAAAAAA CCGCC AGTT GGCGG TTTTTTTATTGGCAG TERM 1317 1209955 - 1209942 - R 100 -9.5 -5.7946 | opp_overlap 1209942 1209922, overlap 1209927 1209926 1209924 CTGCCAATAAAAAAA CCGCC AGTT GGCGG TTTTTTTATTGGCAG Shal_0983 1210724 - 1209990 - | hypothetical protein Shal_0984 1211262 - 1210891 - | protein of unknown function DUF861 cupin_3 TERM 1318 1211332 - 1211315 - R 100 -10.5 -5.27477 | opp_overlap 1211314 1211316 AGCTGAACGAAAAAA GCGCGGC ATAA GCCACGC CTCGTTATTGTTACT Shal_0985 1212848 - 1211343 - | methylmalonate-semialdehyde dehydrogenase TERM 1319 1212954 - 1212909 - R 100 -22.1 -2.7728 | gap 1 GGTAAATGTTAATGA CT-TGCCGATGCCGTTACTGCG AGT CGCAATAACGGCTTCGGCATAG GGATTAACCCACAGC Shal_0986 1214298 - 1212958 - | beta alanine--pyruvate transaminase TERM 1320 1215460 - 1215442 - g 78 -6.6 -4.62069 | opp_overlap 1215443, overlap 1215443 GCCGGATCTTAAAAA GGCTGCAG AGG CCGCAGCT TGTGCAATTGCCTTT TERM 1321 1215459 - 1215443 - g 73 -10.1 -3.3692 | opp_overlap 1215443, overlap 1215442 CCGGATCTTAAAAAG GCTGCAG AGG CCGCAGC TTGTGCAATTGCCTT Shal_0987 1214585 - 1216084 + | aldehyde dehydrogenase TERM 1322 1216178 - 1216201 + F 100 -14.6 -5.1963 | opp_overlap 1216173 ATCGAAATATTCTAA GCCCCCGAGT GCAG ACTTGGGGGC TTTTTGTTGATTGCG TERM 1323 1216368 - 1216354 - g 74 -3.5 -4.9218 | gap 1, overlap 1216355 1216356 GAGTTAGCAGAAAAA GTCGGC TTAA GCCG-C TCGACTCTGCTGTAT Shal_0988 1216324 - 1217550 + | MerR family transcriptional regulator Shal_0989 1217664 - 1218200 + | GCN5-related N-acetyltransferase Shal_0990 1218290 - 1218883 + | putative adenylyl cyclase CyaB TERM 1324 1219140 - 1219156 + G 79 -2.2 -5.5353 | overlap 1219141 GCCGCTAAAAATGTT GCAGCA GGTGG TGCTGA TTTTTTATTAATCTG Shal_0991 1218927 - 1219619 + | aspartate racemase TERM 1325 1219674 - 1219703 + T 79 -10.9 -3.15579 | opp_overlap 1219681, overlap 1219681 GCCGATTGCAGGTAT TAAAAAACGGACT ATTA AGTCCGTTTATTA TTGATACGGGATTAA TERM 1326 1219681 - 1219696 + T 88 -9 -4.48713 | opp_overlap 1219681, overlap 1219674 GCAGGTATTAAAAAA CGGACT ATTA AGTCCG TTTATTATTGATACG TERM 1327 1219696 - 1219681 - T 90 -9 -5.1675 | opp_overlap 1219681 1219674 GCAGGTATTAAAAAA CGGACT ATTA AGTCCG TTTATTATTGATACG Shal_0992 1221035 - 1219728 - | FAD dependent oxidoreductase Shal_0993 1221283 - 1221831 + | XRE family transcriptional regulator TERM 1328 1221856 - 1221899 + F 85 -11.3 -3.28912 | gap 1, opp_overlap 1221856 TCCTCTTTTTGTAAA GCTAGCTTACCGCAGAGAAT ATCGA ATTCTTTACGGTAA-CTAGC TTGCTATCCGTATCA TERM 1329 1221899 - 1221856 - f 88 -11.3 -3.53012 | gap 1, opp_overlap 1221856 TCCTCTTTTTGTAAA GCTAGCTTACCGCAGAGAAT ATCGA ATTCTTTACGGTAA-CTAGC TTGCTATCCGTATCA Shal_0994 1222329 - 1223090 + | peptidase C26 TERM 1330 1223175 - 1223163 - g 71 -10.5 -2.62184 | TCGTCTGTGATATGA CGGGC ATT GCCCG TGGCAAGATTGCACC TERM 1331 1223229 - 1223216 - g 71 -3.8 -4.7497 | overlap 1223218 TTTATTGACGAAAAA GGCA TGCGTT TGCC TGAGAGTGTGTTGCT TERM 1332 1223484 - 1223474 - g 74 -6.8 -4.23674 | opp_overlap 1223474 CTTTATGAAGATAAA GGCT GGA AGCC TGTGGTTGCACCAGA Shal_0995 1223093 - 1224442 + | glutamate--putrescine ligase Shal_0996 1224720 - 1225820 + | extracellular solute-binding protein TERM 1333 1225855 - 1225822 - f 81 -11.9 -2.50291 | gap 1, opp_overlap 1225829, overlap 1225829 AATCAGGCTACTAAG CAAATAAGGGTAAGGC ATC GCCTTGCCCTT-TTTG ATCAACAGCTAATTT TERM 1334 1225849 - 1225829 - f 88 -11.1 -4.10437 | opp_overlap 1225829, overlap 1225822 CTACTAAGCAAATAA GGGTAAGGC ATC GCCTTGCCC TTTTTGATCAACAGC TERM 1335 1225829 - 1225849 + F 100 -13.3 -4.72272 | opp_overlap 1225829 1225822 CTACTAAGCAAATAA GGGTAAGGC ATC GCCTTGCCC TTTTTGATCAACAGC Shal_0997 1225939 - 1227075 + | spermidine/putrescine ABC transporter ATPase subunit Shal_0998 1227086 - 1227991 + | binding-protein-dependent transport systems inner membrane component Shal_0999 1227988 - 1228803 + | ornithine carbamoyltransferase TERM 1336 1228820 - 1228855 + F 93 -14.1 -2.63555 | overlap 1228817 1228818 CTTATCAGTGTTACT CGGGGATAAAGGTTG CATTGT CTGCCTTTATCCCCG TCAGTTATATCGATA Shal_1000 1228969 - 1230291 + | FAD dependent oxidoreductase TERM 1337 1230752 - 1230733 - g 88 -12.2 -3.62275 | ACGGAGCAGGGCAAA CCCTTAGC TGAA GCTAAGGG TGAGGTCGCCTATGC Shal_1001 1230433 - 1231881 + | succinic semialdehyde dehydrogenase Shal_1002 1231929 - 1233206 + | 4-aminobutyrate aminotransferase TERM 1338 1233259 - 1233283 + T 93 -7.2 -5.42514 | gap 1, opp_overlap 1233259 TAATGCGTGCGGAAA TCCGAGAGCCG TTTT TGG-TCTCGGA TTTTTTACTTTCTAA Shal_1003 1233735 - 1233304 - | UspA domain-containing protein TERM 1339 1234203 - 1234187 - R 76 -2.2 -5.4492 | opp_overlap 1234187, overlap 1234189 TATAGATATAAAAAA GTCTAC ATGAG GTAGGC TTTCCGTTTTAAATT TERM 1340 1234390 - 1234367 - R 100 -14 -4.84527 | opp_overlap 1234367 TCTAGACATGAAAAA GCCGCTTAAA TTTC TTTAAGCGGC TTATCAAAATTGGTG TERM 1341 1234367 - 1234390 + r 95 -14 -3.33737 | opp_overlap 1234367 TCTAGACATGAAAAA GCCGCTTAAA TTTC TTTAAGCGGC TTATCAAAATTGGTG TERM 1342 1234649 - 1234636 - R 100 -8.1 -6.15828 | opp_overlap 1234635 1234636 TTGAGCAAAAAAAAA CTGCC CTTG GGCAG CTTTCTGTTTGAAAT Shal_1004 1236545 - 1234698 - | RNA polymerase, sigma 70 subunit, RpoD TERM 1343 1235342 - 1235361 + g 72 -5 -4.59773 | TAAGATCCAAGAACT GTAGACCA CGGT TGGTATAC TTTTTCGCGATAGAA Shal_1005 1238393 - 1236663 - | DNA primase TERM 1344 1237084 - 1237118 + g 72 -6.6 -4.29845 | overlap 1237101 AACGCTTTGTGCTGA TTTGGCTTTTCGGC CGCCTTA GTCGAAAAGTTAAA TTTTCGCTTAAGTTC TERM 1345 1238509 - 1238486 - R 88 -8.8 -4.66535 | opp_overlap 1238486 1238489, overlap 1238489 AATTTCGAAAACAAA CAAGCCGCGC AGAA GCACGGCTCA TTCATGCAATAAAAC TERM 1346 1238506 - 1238489 - R 90 -10.5 -4.43397 | opp_overlap 1238489 1238486, overlap 1238486 TTCGAAAACAAACAA GCCGCGC AGAA GCACGGC TCATTCATGCAATAA Shal_1006 1238973 - 1238530 - | GatB/YqeY domain-containing protein TERM 1347 1238991 - 1239005 + r 75 -7.8 -4.07568 | opp_overlap 1238991 TGAGATTAATATAAA CGTACG CGA CGTGCG TTTTCGCGAGAAAGC Shal_1007 1239196 - 1238981 - | 30S ribosomal protein S21 TERM 1348 1239161 - 1239144 - G 75 -9.9 -3.55548 | opp_overlap 1239142 1239160, overlap 1239135 CAAGAGCGCTTGAAA CGACGTA GAGC TACGTCG AATGGTTCGTTTTCA TERM 1349 1239630 - 1239648 + G 71 -9.6 -3.12327 | opp_overlap 1239630, overlap 1239628 CGGATGCTGACATGA CTATCGAG GAT CTCGATGG TATTGCCTATACCAA TERM 1350 1240417 - 1240397 - g 79 -8.9 -4.07885 | GATTTGGCGGTAAAA GGGCAGCCA AGA TGGCCGCTC GATACCTTAGAGCCT Shal_1008 1239425 - 1240441 + | metalloendopeptidase glycoprotease family TERM 1351 1240449 - 1240497 + T 100 -16.1 -3.80625 | opp_overlap 1240450 1240464, overlap 1240450 1240464 TAGATTAAGATTTAA AGGTAACTAGAAAAACGGCGCTC ATA GAGCGCCGTTTTTGTTGATACCG TTTCGATTATCAGAA TERM 1352 1240496 - 1240450 - T 100 -19.6 -3.78233 | opp_overlap 1240449 1240450 1240464, overlap 1240464 AGATTAAGATTTAAA GGTAACTAGAAAAACGGCGCTC ATA GAGCGCCGTTTTTGTTGATACC GTTTCGATTATCAGA TERM 1353 1240450 - 1240496 + T 100 -19.6 -2.88054 | opp_overlap 1240450 1240464, overlap 1240449 1240464 AGATTAAGATTTAAA GGTAACTAGAAAAACGGCGCTC ATA GAGCGCCGTTTTTGTTGATACC GTTTCGATTATCAGA TERM 1354 1240482 - 1240464 - T 100 -16 -4.98857 | opp_overlap 1240450 1240449 1240464, overlap 1240450 AGGTAACTAGAAAAA CGGCGCTC ATA GAGCGCCG TTTTTGTTGATACCG TERM 1355 1240464 - 1240482 + T 100 -16 -5.1356 | opp_overlap 1240464 1240450, overlap 1240450 1240449 AGGTAACTAGAAAAA CGGCGCTC ATA GAGCGCCG TTTTTGTTGATACCG Shal_1009 1241130 - 1240507 - | 2OG-Fe(II) oxygenase Shal_1010 1242033 - 1241434 - | putative glycerol-3-phosphate acyltransferase PlsY TERM 1356 1241822 - 1241832 + g 76 -8.2 -4.16943 | opp_overlap 1241819 AAAGCTAGATAAGCT GGCG CCG CGCC TTTTAGCATGTCACA Shal_1011 1242344 - 1242697 + | dihydroneopterin aldolase Shal_1012 1242698 - 1243189 + | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase TERM 1357 1243754 - 1243770 + G 73 -2.1 -5.1971 | ATGCTGGGGTTAAGT CGTGAGG CTG CAGCACG TTTTTCATTTTTGAT Shal_1013 1243214 - 1244014 + | undecaprenyl pyrophosphate phosphatase TERM 1358 1244015 - 1244037 + F 73 -7.1 -4.05714 | opp_overlap 1244015 TTTATCTTTTTATAA TTGTAGGGT AAGCC ACCCTATAA TTTATCATTCAAGCT Shal_1014 1244069 - 1244902 + | rRNA (guanine-N(1)-)-methyltransferase Shal_1015 1244956 - 1245855 + | ErfK/YbiS/YcfS/YnhG family protein TERM 1359 1245847 - 1245863 + T 73 -6.6 -4.208 | ATCCCGGTGAATATC CAAAGC TAATC GCTTTG TTTATCATTTTGAAG TERM 1360 1245879 - 1245895 + T 100 -10.1 -5.59655 | TTTATCATTTTGAAG GCGTCCA CAT TGGGCGC TTTTTTATTGCTTTA TERM 1361 1246042 - 1246010 - T 77 -8 -4.20552 | gap 2, overlap 1246036 AACAGATAAATTAAA GGCTTGG-TT-AAGTA CAA TACTTGAAACCAAGCC TTGGGAGTTAGCCTG Shal_1016 1246354 - 1246088 - | major outer membrane lipoprotein, putative Shal_1017 1247850 - 1246573 - | polynucleotide adenylyltransferase/metal dependent phosphohydrolase TERM 1362 1248075 - 1248120 + H 74 -3.9 -5.07486 | ACATAAAATTAATGA CATATCGACTGGTAGAACACG GTAA TGTGATCCCTCGGTCGGTGTG TTTTTATTGCGCGTA TERM 1363 1248534 - 1248514 - g 73 -11.3 -2.61695 | opp_overlap 1248514, overlap 1248513 1248511 CCGAGCCTTAAACAG CTTACTGAT CTC ATCAGTAAG TTCCTGCTTGAGAAT TERM 1364 1248514 - 1248534 + G 77 -11.3 -3.27476 | opp_overlap 1248514 1248513 1248511 CCGAGCCTTAAACAG CTTACTGAT CTC ATCAGTAAG TTCCTGCTTGAGAAT TERM 1365 1248739 - 1248720 - g 72 -9.2 -3.56378 | overlap 1248718 GCTTAAAAGACAAGA GCTGCGCC AATT GGCCCAGC GAATTACCGCCCGCT Shal_1018 1248196 - 1249809 + | peptidoglycan binding domain-containing protein TERM 1366 1250521 - 1250547 + G 79 -11 -3.34398 | overlap 1250519 AGCGCGCAGAGTCGG CGGCTAACAA TAATAAT TTGTTAGCCG TATTTGAAGCAGCGC Shal_1019 1249809 - 1250879 + | general secretion pathway protein B TERM 1367 1250897 - 1250930 + T 85 -7.6 -4.91511 | gap 1, opp_overlap 1250890 1250903, overlap 1250903 AGATAACACCGTTTT G-AAAAAGGCCTAAC TAAGT GCTAGGCCTTTTTGC TTTTTATCATCAAAT TERM 1368 1250923 - 1250903 - T 88 -9 -4.57073 | opp_overlap 1250897 1250903, overlap 1250890 CACCGTTTTGAAAAA GGCCTAAC TAAGT GCTAGGCC TTTTTGCTTTTTATC TERM 1369 1250903 - 1250923 + T 89 -6.8 -5.2197 | opp_overlap 1250890 1250903, overlap 1250897 CACCGTTTTGAAAAA GGCCTAAC TAAGT GCTAGGCC TTTTTGCTTTTTATC Shal_1020 1252211 - 1250964 - | citrate transporter TERM 1370 1252030 - 1252051 + g 82 -5.9 -5.1675 | overlap 1252033 ATTTCTAGCAGGTTT TCATTGAGC TGAT GCTCAATAA TTTTTTCATGGCTAG TERM 1371 1252605 - 1252622 + r 91 -9.9 -4.65747 | opp_overlap 1252605 GGTGGATACAAAAAA GGAACAC CTAA GTGTTCC TTTTATTAGCGATTA TERM 1372 1252622 - 1252605 - R 100 -9.9 -5.36441 | opp_overlap 1252605 GGTGGATACAAAAAA GGAACAC CTAA GTGTTCC TTTTATTAGCGATTA Shal_1021 1253951 - 1252662 - | glutamate-1-semialdehyde-2,1-aminomutase TERM 1373 1254465 - 1254485 + r 83 -11.1 -3.70007 | overlap 1254461 GTTCATGCTGCTAAT CTCACTGCC ACT GGCAGCGAG TTCATTTTGAATGGT TERM 1374 1254776 - 1254793 + r 73 -9.9 -3.25093 | opp_overlap 1254776, overlap 1254774 AATCAAAAGAAAAAA TGGCTAC CTAA GTAGCCA TCTTCGTTCCAGTAT TERM 1375 1254793 - 1254776 - R 100 -9.9 -5.85244 | opp_overlap 1254776 1254774 AATCAAAAGAAAAAA TGGCTAC CTAA GTAGCCA TCTTCGTTCCAGTAT Shal_1025 1255986 - 1254820 - | hypothetical protein Shal_1026 1256941 - 1256015 - | ApbE family lipoprotein Shal_1027 1257405 - 1258190 + | prolipoprotein diacylglyceryl transferase TERM 1376 1258242 - 1258210 - T 100 -14.3 -4.3898 | opp_overlap 1258215, overlap 1258215 ACTAGTGCTAGAAAA CAAAAGCCGTAAGCA AAT CGCTTACGGCTTTTT TGTGTTAAGAGGGCT TERM 1377 1258237 - 1258215 - T 100 -14.2 -5.18371 | opp_overlap 1258215, overlap 1258210 TGCTAGAAAACAAAA GCCGTAAGCA AAT CGCTTACGGC TTTTTTGTGTTAAGA TERM 1378 1258215 - 1258237 + T 100 -13.5 -5.47159 | opp_overlap 1258215 1258210 TGCTAGAAAACAAAA GCCGTAAGC AAATC GCTTACGGC TTTTTTGTGTTAAGA TERM 1379 1259390 - 1259414 + T 93 -11.5 -4.37067 | opp_overlap 1259390 AGCTTAAATAAAAAA GCCCAGATAAT GTC ATTATCCGGGC TTTTGCTAATATTTA TERM 1380 1259414 - 1259390 - T 100 -13.7 -5.64421 | opp_overlap 1259390 AGCTTAAATAAAAAA GCCCAGATAAT GTC ATTATCCGGGC TTTTGCTAATATTTA Shal_1030 1259916 - 1259506 - | cytochrome c class I Shal_1031 1260307 - 1259918 - | hypothetical protein Shal_1032 1261533 - 1260307 - | oxidoreductase molybdopterin binding Shal_1033 1261853 - 1261533 - | cytochrome c class I TERM 1381 1262103 - 1262117 + r 73 -2.1 -5.34381 | AAAGTGATGCTTAAG TAGAC TGTTT GTCTG TTTTTGTTTCAATTT Shal_1034 1264345 - 1262624 - | chloride channel core TERM 1382 1263807 - 1263787 - G 78 -6.1 -4.56775 | overlap 1263788 1263789 1263798 ATGGTGCGTTAAAAA TCGCCGC AATACCG GCGGCAA TACCACTGGCACACA Shal_1035 1264407 - 1265210 + | hypothetical protein Shal_1036 1265203 - 1265553 + | iron-sulfur cluster insertion protein ErpA TERM 1383 1265603 - 1265588 - T 100 -10.4 -5.65513 | opp_overlap 1265588 GAGCAAGTAAAAAAA GCCGTC AAAT GACGGC TTTTTTTATAACTGC TERM 1384 1265588 - 1265603 + T 100 -10.4 -5.64274 | opp_overlap 1265588 GAGCAAGTAAAAAAA GCCGTC AAAT GACGGC TTTTTTTATAACTGC Shal_1037 1266154 - 1265636 - | hypothetical protein Shal_1038 1266585 - 1266244 - | hypothetical protein TERM 1385 1266743 - 1266724 - R 75 -2.9 -5.2853 | gap 1, opp_overlap 1266724 TATTGAAAAAGAAAA CAGAG-CT TAATT AGCCTCTG TTTCTCTATATTGAC Shal_1039 1268253 - 1266841 - | alkaline phosphatase TERM 1386 1267149 - 1267139 - G 72 -3.2 -5.00616 | overlap 1267142 1267148 TGGGGGCGTAAAAAA GCAC TAA ATGC GGCTAAATCATTTAG TERM 1387 1267818 - 1267829 + g 78 -5.8 -4.87893 | opp_overlap 1267818 TCTGTGAGGTAACGA CCAC TGCG GTGG TTTTTCCTTGAGCTT Shal_1040 1270855 - 1268336 - | peptidase S9 prolyl oligopeptidase TERM 1388 1269451 - 1269441 - G 71 -6.8 -4.18934 | GATGACTGTAAGAAA GGCT GAT AGCC CTCAGGTGAGGCGCC TERM 1389 1270377 - 1270387 + g 73 -4.6 -4.88736 | CTTGGATTGAGTTTG CGGC TCT GCTG TTTTTCTAAATCATA TERM 1390 1270682 - 1270721 + g 72 -2.8 -5.01811 | opp_overlap 1270691, overlap 1270683 1270683 TCTTGGGGTTAATAT CGCAAGCCATTGCTTATC TTGA GATAAGCGAGTGCTTACA TTTTTAGTTTGCTCA TERM 1391 1270921 - 1270894 - R 90 -12.8 -3.61268 | opp_overlap 1270896 1270899, overlap 1270896 1270899 GAGGTAAGCGGGAAA GATAAGCGCCCA AAGT TGGGCGCTTATT TCTCGTATCGAAGGG TERM 1392 1270896 - 1270919 + r 100 -15.4 -4.0162 | opp_overlap 1270896 1270894 1270899, overlap 1270899 GGTAAGCGGGAAAGA TAAGCGCCCA AAGT TGGGCGCTTA TTTCTCGTATCGAAG TERM 1393 1270919 - 1270896 - R 100 -15.4 -3.38314 | opp_overlap 1270896 1270899, overlap 1270894 1270899 GGTAAGCGGGAAAGA TAAGCGCCCA AAGT TGGGCGCTTA TTTCTCGTATCGAAG TERM 1394 1270916 - 1270899 - R 93 -12.7 -3.82603 | opp_overlap 1270899 1270896, overlap 1270896 1270894 AAGCGGGAAAGATAA GCGCCCA AAGT TGGGCGC TTATTTCTCGTATCG TERM 1395 1270899 - 1270916 + r 93 -12.7 -4.1337 | opp_overlap 1270896 1270894 1270899, overlap 1270896 AAGCGGGAAAGATAA GCGCCCA AAGT TGGGCGC TTATTTCTCGTATCG Shal_1041 1273716 - 1270951 - | TonB-dependent receptor TERM 1396 1272217 - 1272199 - G 79 -10.2 -3.53811 | GGCAGTGGTTGCAAA GCCAGCTG TGC CCGCTGGC AACTCCATCAAATCA TERM 1397 1272402 - 1272412 + g 74 -5.4 -4.70319 | GCGCATCAGCTTTTA CCAT GTG ATGG TTTTGCTTTTCGTAC Shal_1042 1274069 - 1276219 + | winged helix family two component response transcriptional regulator Shal_1043 1277446 - 1276337 - | anhydro-N-acetylmuramic acid kinase Shal_1044 1278942 - 1277518 - | peptidase M23B TERM 1398 1278632 - 1278655 + g 76 -5.2 -4.8143 | overlap 1278633 TGTATTTCAGGCTTG TCAGTCGCTT GAAC AAGCGCCTGC TTTTTGGATTGTTCA TERM 1399 1279119 - 1279107 - g 74 -3.3 -5.02323 | TTAGCAGAAATAAAA CGTGG CAC CGACG AGATATTACTTGAAG TERM 1400 1279701 - 1279680 - g 76 -5.1 -4.87665 | CGTGAGTTACAAAAA TCTGCGGGT CAAA AGCCACAGA CAGTGATCATGATGC Shal_1045 1279071 - 1280267 + | tyrosyl-tRNA synthetase Shal_1046 1280739 - 1280329 - | hypothetical protein Shal_1047 1281367 - 1280888 - | hypothetical protein TERM 1401 1280927 - 1280941 + g 74 -7.2 -4.32067 | overlap 1280918 1280924 CATAGTTTGATAGTC CATCAA GTC TTGATG TTCTTTTATCCGCTC Shal_1048 1281990 - 1281367 - | hypothetical protein Shal_1049 1282376 - 1281987 - | hypothetical protein Shal_1050 1283490 - 1282510 - | cobalamin biosynthesis protein CbiB Shal_1051 1284269 - 1283577 - | adenosylhomocysteine nucleosidase TERM 1402 1283932 - 1283916 - G 71 -7.9 -3.93963 | AGCATCAGGGATAAA CGCTGCA GGT TGCTGCG CCATCTGGCCAATCT Shal_1052 1284758 - 1286053 + | diguanylate cyclase TERM 1403 1286602 - 1286624 + G 74 -8.5 -3.84451 | TGGATGCCTTTATAC CTGCTCGTA AACTC TATGAGCAG TTTGGCTTTACCGAG Shal_1053 1286247 - 1286702 + | GCN5-related N-acetyltransferase TERM 1404 1286810 - 1286794 - T 76 -6.7 -4.4017 | TTAAGGCCTACAAAA TTAAGTT TAT AACTTAA GCGAAGTGCCGTAAG Shal_1054 1287309 - 1286827 - | MarR family transcriptional regulator TERM 1405 1287392 - 1287426 + r 90 -11.5 -4.08485 | opp_overlap 1287394, overlap 1287393 TCGCAGCGATTAAAA AAGTGCGGTATAACG ATCAG CGTTATACCGCACAA TTTAGTTTAGCTGCA TERM 1406 1287393 - 1287425 + r 100 -15 -3.04609 | opp_overlap 1287394, overlap 1287392 CGCAGCGATTAAAAA AGTGCGGTATAACG ATCAG CGTTATACCGCACA ATTTAGTTTAGCTGC TERM 1407 1287424 - 1287394 - R 100 -18.5 -5.1675 | opp_overlap 1287393 1287392 GCAGCGATTAAAAAA GTGCGGTATAACG ATCAG CGTTATACCGCAC AATTTAGTTTAGCTG Shal_1055 1288181 - 1287477 - | hypothetical protein Shal_1056 1289417 - 1288200 - | putative transporter, BCCT family protein TERM 1408 1289534 - 1289573 + r 76 -10.9 -2.53263 | opp_overlap 1289532 1289530, overlap 1289539 GGCCGCAAAAATCCC TCAAGCCTTAATTGCCG CTTTAA CGACAGTTAAGGTTTGA TAAATTAAACGTGGC TERM 1409 1289539 - 1289568 + r 71 -7.2 -3.794 | opp_overlap 1289532 1289530, overlap 1289534 CAAAAATCCCTCAAG CCTTAATTGCCG CTTTAA CGACAGTTAAGG TTTGATAAATTAAAC Shal_1057 1291460 - 1289763 - | choline dehydrogenase TERM 1410 1289949 - 1289930 - G 72 -5 -4.58283 | GAATCGTCGGAAAAA TAGAGGAG TCAA CTACTCTA AGCCCTTGTATTCCA Shal_1058 1292933 - 1291470 - | betaine aldehyde dehydrogenase Shal_1059 1293529 - 1292924 - | transcriptional regulator BetI TERM 1411 1293649 - 1293629 - R 90 -11.3 -3.81414 | opp_overlap 1293632, overlap 1293632 ACGTTCAATTAATAA CAACTCTAA TGG TTAGAGTTG TAACGATCAAGCTTT TERM 1412 1293646 - 1293632 - R 73 -7.2 -4.0342 | opp_overlap 1293632, overlap 1293629 TTCAATTAATAACAA CTCTAA TGG TTAGAG TTGTAACGATCAAGC TERM 1413 1294033 - 1294014 - R 100 -9.2 -5.56264 | overlap 1294015 GCTAAATATAAAAAA GGCGCTCC ATCG GGAGCGCA TAATCACAAGCAACT TERM 1414 1294032 - 1294015 - R 93 -12.7 -3.92132 | overlap 1294014 CTAAATATAAAAAAG GCGCTCC ATCG GGAGCGC ATAATCACAAGCAAC Shal_1060 1295588 - 1294179 - | glutamate synthase subunit beta Shal_1061 1300043 - 1295595 - | glutamate synthase subunit alpha TERM 1415 1296668 - 1296679 + g 73 -2.2 -5.10933 | overlap 1296665 AGCCGTGGTAATGCT CGTT ACGA AGCG TTTTGTTTTGAGTGG TERM 1416 1298573 - 1298561 - G 70 -4.7 -4.52857 | opp_overlap 1298562, overlap 1298562 ACTTTTTAGATAAAA CCGCC ATA GGCGT GTCATCACCCATAGA Shal_1062 1300543 - 1301484 + | putative radical SAM protein Shal_1063 1301674 - 1302039 + | Hpt protein TERM 1417 1302061 - 1302090 + F 100 -6.6 -5.71712 | gap 2, opp_overlap 1302061 TAGCTTCAAAATTGA TAGCGCAGTTTGGA TTTA TCCA--CTGCGCTA TTTTTTTATCTGGAG Shal_1064 1302217 - 1303149 + | LysR family transcriptional regulator TERM 1418 1303198 - 1303171 - T 80 -10 -3.65542 | opp_overlap 1303176, overlap 1303176 GGGATTGCTAAAACA GAAAAGCCGATA TGAT TATCGGCTTTTT ATTTTTTAAGATTTA TERM 1419 1303176 - 1303193 + T 100 -9.9 -5.75538 | opp_overlap 1303171 1303176 TGCTAAAACAGAAAA GCCGATA TGAT TATCGGC TTTTTATTTTTTAAG TERM 1420 1303193 - 1303176 - T 93 -9.9 -4.89567 | opp_overlap 1303176, overlap 1303171 TGCTAAAACAGAAAA GCCGATA TGAT TATCGGC TTTTTATTTTTTAAG Shal_1065 1304284 - 1303211 - | putative adenylate/guanylate cyclase Shal_1066 1305080 - 1304409 - | DNA mismatch repair protein TERM 1421 1305147 - 1305130 - H 72 -3.5 -5.01732 | AATGCGCGCAAAAAA CAAACAA CTAT TTATTTG CTTGGTGATAACTTT TERM 1422 1305603 - 1305636 + H 89 -11.9 -3.6943 | gap 1, opp_overlap 1305607 1305609 1305611, overlap 1305606 1305625 TAATTGAGTTTCCAA CAGA-GATATCCACAG TTT CTGTGGATATCATCAG TTATCCTTTTACCTC TERM 1423 1305606 - 1305632 + H 83 -12.4 -2.65876 | opp_overlap 1305607 1305609 1305611, overlap 1305603 1305625 TTGAGTTTCCAACAG AGATATCCACAG TTT CTGTGGATATCA TCAGTTATCCTTTTA TERM 1424 1305631 - 1305607 - H 100 -15.9 -3.07344 | opp_overlap 1305606 1305603 1305625, overlap 1305609 1305611 TGAGTTTCCAACAGA GATATCCACAG TTT CTGTGGATATC ATCAGTTATCCTTTT TERM 1425 1305629 - 1305609 - H 84 -12.7 -3.09452 | opp_overlap 1305606 1305603 1305625, overlap 1305607 1305611 AGTTTCCAACAGAGA TATCCACAG TTT CTGTGGATA TCATCAGTTATCCTT TERM 1426 1305627 - 1305611 - H 79 -10.9 -3.10493 | opp_overlap 1305606 1305603 1305625, overlap 1305609 1305607 TTTCCAACAGAGATA TCCACAG TTT CTGTGGA TATCATCAGTTATCC Shal_1067 1305773 - 1306294 + | dinucleoside polyphosphate hydrolase Shal_1068 1306314 - 1308548 + | phosphoenolpyruvate-protein phosphotransferase PtsP Shal_1069 1308623 - 1309423 + | hypothetical protein TERM 1427 1310145 - 1310135 - g 74 -8.2 -3.87075 | opp_overlap 1310134 ATTACTGGCCATAAA GCGG GAA CCGC ATTCCATAAAATTGT Shal_1070 1309508 - 1310359 + | thymidylate synthase TERM 1428 1310365 - 1310381 + F 70 -9.5 -2.73124 | overlap 1310364 CTCAGTGTAACTTTT CCTGATT ACA AATCAGG CTTTAAAAACTCGCC TERM 1429 1310391 - 1310406 + F 100 -10.4 -5.626 | opp_overlap 1310391 ATCAGGCTTTAAAAA CTCGCC AAAT GGCGAG TTTTTTTATCCAATA TERM 1430 1310406 - 1310391 - f 91 -10.4 -4.58663 | opp_overlap 1310391 ATCAGGCTTTAAAAA CTCGCC AAAT GGCGAG TTTTTTTATCCAATA Shal_1071 1311115 - 1312290 + | Na+/H+ antiporter NhaA Shal_1072 1312287 - 1312670 + | hypothetical protein TERM 1431 1312686 - 1312710 + F 100 -10.8 -5.38054 | opp_overlap 1312682 1312686 GCCTAAAAAAGCTAA CGAGGTAACT GAATA AGTTGCCTCG TTTTTATTTATAACA TERM 1432 1312710 - 1312686 - f 72 -8.6 -3.52177 | opp_overlap 1312686, overlap 1312682 GCCTAAAAAAGCTAA CGAGGTAACT GAATA AGTTGCCTCG TTTTTATTTATAACA Shal_1073 1312740 - 1313648 + | transcriptional activator NhaR Shal_1074 1313815 - 1314054 + | hypothetical protein TERM 1433 1314076 - 1314098 + G 93 -14.9 -3.428 | TGTTTGCTCCTCTTT CGGTCAGCG TTTTT CGCTGACCG TTATCGCCTTTGTTT Shal_1075 1314035 - 1314451 + | hypothetical protein Shal_1076 1316092 - 1314482 - | L-aspartate oxidase TERM 1434 1315307 - 1315286 - G 72 -5.1 -4.65895 | gap 1, opp_overlap 1315288, overlap 1315287 1315288 TGGGCGACGTAAAAA TGCCCCTTCG CCG CGAAG-GGCT TCGGTAAGCAAAAAG Shal_1077 1316312 - 1316890 + | RNA polymerase sigma factor RpoE Shal_1078 1316916 - 1317521 + | anti sigma-E protein, RseA Shal_1079 1317534 - 1318466 + | sigma E regulatory protein, MucB/RseB TERM 1435 1318886 - 1318867 - g 72 -2.8 -5.00616 | GCCGCCGGGAAAAAA GCGTCCAA GAGA TTAGAAGC GCAGGCACAGCCTGT Shal_1080 1318480 - 1318944 + | positive regulator of sigma E, RseC/MucC Shal_1081 1319074 - 1320864 + | GTP-binding protein LepA TERM 1436 1320879 - 1320852 - f 72 -9.4 -3.06183 | gap 1, opp_overlap 1320851 1320852 CTTAGCGGTACTGAA GCTTAACG-ATTA AAC TAATTCGTTAAGC ATTGTTAATCTATCG TERM 1437 1320852 - 1320879 + F 71 -9.4 -2.87529 | gap 1, opp_overlap 1320852, overlap 1320851 CTTAGCGGTACTGAA GCTTAACG-ATTA AAC TAATTCGTTAAGC ATTGTTAATCTATCG TERM 1438 1320904 - 1320922 + F 100 -16 -3.95852 | opp_overlap 1320892 CTATCGCTAGACTGA GCGCCGCA ATT TGCGGCGC TTTCATTACTGGCGT Shal_1082 1321004 - 1321921 + | signal peptidase I Shal_1083 1321923 - 1322600 + | ribonuclease III Shal_1084 1322597 - 1323589 + | GTP-binding protein Era TERM 1439 1323652 - 1323625 - f 72 -10 -2.68381 | opp_overlap 1323625, overlap 1323624 1323622 TAATCTAGCAAATAG TGCCTCTTTTTA GTGA TAAGAAGAGGCA TTTTTTTATAGCAAG TERM 1440 1323625 - 1323652 + F 100 -12.2 -5.60993 | opp_overlap 1323625 1323624 1323622 TAATCTAGCAAATAG TGCCTCTTTTTA GTGA TAAGAAGAGGCA TTTTTTTATAGCAAG Shal_1085 1323718 - 1324473 + | DNA repair protein RecO TERM 1441 1325101 - 1325081 - g 80 -9.6 -3.92075 | opp_overlap 1325070 ACGCCGACGCAGAAA CCGACGCC GAACA GGCGACGG AGCTGCAACGTATTA Shal_1086 1324591 - 1325328 + | pyridoxal phosphate biosynthetic protein PdxJ TERM 1442 1325353 - 1325373 + F 90 -8.3 -5.01553 | CCATCATTACTGATA GCCGAGA CATACGT TCTCGGC TTTTATTTATGCATT Shal_1087 1325516 - 1325911 + | holo-acyl-carrier-protein synthase Shal_1088 1326382 - 1325921 - | GCN5-related N-acetyltransferase TERM 1443 1326475 - 1326525 + r 77 -7.7 -4.14013 | gap 1, overlap 1326476 1326482 1326516 AAGAAACGTGAGTGG GCATC-AGTGCACGTTAAGCTCAT TTAG AAGCGCTTAACGTGCGTTAGATGG TTTTAACGAGTTTTA TERM 1444 1326476 - 1326524 + r 81 -11.2 -3.07685 | gap 1, overlap 1326475 1326482 1326516 AGAAACGTGAGTGGG CATC-AGTGCACGTTAAGCTCAT TTAG AAGCGCTTAACGTGCGTTAGATG GTTTTAACGAGTTTT TERM 1445 1326482 - 1326517 + r 82 -11.2 -3.19038 | overlap 1326476 1326475 1326516 GTGAGTGGGCATCAG TGCACGTTAAGCTCAT TTAG AAGCGCTTAACGTGCG TTAGATGGTTTTAAC Shal_1089 1327486 - 1326545 - | Dyp-type peroxidase family protein TERM 1446 1326630 - 1326644 + g 87 -10 -4.2679 | opp_overlap 1326628 1326625 ACGAAGTCAAGAAGG CGGTCA TAA TGACCG TTTTCGTCGGCATTA Shal_1090 1327826 - 1328872 + | hypothetical protein TERM 1447 1329536 - 1329514 - g 75 -2.6 -5.24799 | overlap 1329522 1329526 TCACAAAGAGAAAAA CCCATCAATC TAC GCCCAATGGG GGCGTTCAAAGCACT Shal_1091 1329338 - 1330804 + | hypothetical protein Shal_1092 1330861 - 1331427 + | NapC/NirT cytochrome c domain-containing protein TERM 1448 1331484 - 1331504 + F 100 -6.8 -5.67711 | opp_overlap 1331484 CTCTTCTCCAGTAAA GGCCGC CTCCCACTT GCGGCC TTTTTATTTTGTTTC TERM 1449 1331738 - 1331726 - g 70 -9.1 -3.31565 | opp_overlap 1331731 1331734, overlap 1331724 CAAACAATATTAAGA CCCAC TTT GTGGG AGTCCCACTGATTAT TERM 1450 1332170 - 1332140 - g 73 -9.8 -3.4214 | opp_overlap 1332143, overlap 1332123 1332136 ATCTCAATAAACAGA TCACGCCGCT GGCGATAACTA AGCGGCGTGA ATTGGAAGCGCTGAG Shal_1093 1331659 - 1332201 + | hypothetical protein Shal_1094 1333573 - 1332293 - | hypothetical protein Shal_1095 1334510 - 1333722 - | cytochrome c assembly protein TERM 1451 1334998 - 1334981 - g 72 -4.9 -4.72029 | gap 1 CTTAACGGAAGAAAA CGTTAAGG AAA CCTTA-CG CGAAGTACGCATGGC TERM 1452 1336168 - 1336143 - g 73 -11.3 -2.53748 | overlap 1336135 1336140 ACACAAATTCAAGAT GTGAACCGTTT GCTT AAACAGTTCAC TCAAATGCAGAAAAT Shal_1096 1334904 - 1336277 + | signal recognition particle protein TERM 1453 1336302 - 1336344 + F 100 -13.6 -4.11216 | opp_overlap 1336305 1336343, overlap 1336305 TAATTCTGCAAAGCT AAATTTACAGACCAGAGTGA AAC TCACGCTGGTCTGTAAATCG TTTTAGGCGTAAAAA TERM 1454 1336305 - 1336341 + F 100 -19.7 -3.09004 | opp_overlap 1336305, overlap 1336302 TTCTGCAAAGCTAAA TTTACAGACCAGAGTGA AAC TCACGCTGGTCTGTAAA TCGTTTTAGGCGTAA TERM 1455 1336341 - 1336305 - f 100 -19.7 -3.84451 | opp_overlap 1336305 1336302 TTCTGCAAAGCTAAA TTTACAGACCAGAGTGA AAC TCACGCTGGTCTGTAAA TCGTTTTAGGCGTAA TERM 1456 1336508 - 1336492 - f 77 -6.5 -4.5954 | opp_overlap 1336492, overlap 1336487 TTAGAGGATACAAAA CGCATGG TTA CCATTCG TTTAGCTCGTGGCGG Shal_1097 1336495 - 1336746 + | 30S ribosomal protein S16 TERM 1457 1336928 - 1336939 + G 71 -7.2 -4.11216 | opp_overlap 1336927, overlap 1336926 GCGCGAGGTTAAAGT CGCC CAGT GGCG TTTTCAGGGTAAAGC Shal_1098 1336767 - 1337297 + | 16S rRNA-processing protein Shal_1099 1337313 - 1338059 + | tRNA (guanine-N(1)-)-methyltransferase Shal_1100 1338096 - 1338449 + | 50S ribosomal protein L19 TERM 1458 1338486 - 1338514 + F 89 -11.8 -3.44891 | opp_overlap 1338493, overlap 1338493 GATGCAGTGTTCGCA CGAGAAACCGCC TATAT GGCGGTTTTTTG TTGCTTGAATTTCTT TERM 1459 1338493 - 1338507 + F 100 -8.5 -5.5604 | opp_overlap 1338493, overlap 1338486 TGTTCGCACGAGAAA CCGCC TATAT GGCGG TTTTTTGTTGCTTGA TERM 1460 1338507 - 1338493 - f 77 -8.5 -3.96148 | opp_overlap 1338486 1338493 TGTTCGCACGAGAAA CCGCC TATAT GGCGG TTTTTTGTTGCTTGA TERM 1461 1338984 - 1338960 - g 70 -10.1 -3.02966 | opp_overlap 1338962 1338964 1338979, overlap 1338959 1338962 ATATTGTACATAAAC GAGATCACC GCGTACT GGTGATCTC TGGTCCTTGCTCTAT TERM 1462 1339425 - 1339435 + G 74 -8.2 -3.89881 | TAGAGTCAGCCGCAA GCGG GCA CCGC TTTATGGGGATTAAT Shal_1101 1338809 - 1339900 + | phospho-2-dehydro-3-deoxyheptonate aldolase Shal_1102 1339900 - 1341054 + | bifunctional chorismate mutase/prephenate dehydrogenase TERM 1463 1341103 - 1341088 - f 74 -4.6 -4.89852 | opp_overlap 1341089, overlap 1341089 CGATATCGACAAAAA GGGAGC TTAG GCTCCT TTTTAGTACCCAAAA TERM 1464 1341089 - 1341102 + F 84 -8.1 -4.72272 | opp_overlap 1341088 1341089 GATATCGACAAAAAG GGAGC TTAG GCTCC TTTTTAGTACCCAAA Shal_1103 1341333 - 1343027 + | hydroxylamine reductase TERM 1465 1343062 - 1343081 + F 86 -7.1 -5.0916 | opp_overlap 1343062 1343050, overlap 1343067 ACAGTAAGTTTAAAA TGGCCGC CACTGA GTGGCCA TTTTTCTCTTACAAA Shal_1104 1343122 - 1344213 + | oxidoreductase FAD-binding subunit Shal_1105 1344351 - 1344689 + | hypothetical protein TERM 1466 1345981 - 1346013 + G 83 -13.5 -3.25823 | opp_overlap 1345987, overlap 1345984 AAGTTTGATTGATAA GAGTAACGCTGAGCA AGC TGCTCAGCGTAAATC TTAATATCAGAAGGA TERM 1467 1345984 - 1346010 + G 83 -13.8 -2.51547 | opp_overlap 1345987, overlap 1345981 TTTGATTGATAAGAG TAACGCTGAGCA AGC TGCTCAGCGTAA ATCTTAATATCAGAA TERM 1468 1346007 - 1345987 - g 100 -15.5 -3.42459 | opp_overlap 1345984 1345981 GATTGATAAGAGTAA CGCTGAGCA AGC TGCTCAGCG TAAATCTTAATATCA Shal_1106 1344731 - 1346017 + | sodium/hydrogen exchanger Shal_1107 1348038 - 1346059 - | chorismate mutase TERM 1469 1346105 - 1346115 + g 74 -6.8 -4.28994 | TTATTAATTAGTTCT GCTG TGT CAGC TTTTGATGCATGCTC TERM 1470 1348120 - 1348151 + r 81 -5.8 -5.05577 | opp_overlap 1348127, overlap 1348127 TCATCTTAGCCGATA TAAAAAAGCCTCCC ATGT GGGAGGCTTTGGAA TTTTTACTTTCGTTT TERM 1471 1348127 - 1348144 + r 93 -12.7 -3.81062 | opp_overlap 1348127, overlap 1348120 AGCCGATATAAAAAA GCCTCCC ATGT GGGAGGC TTTGGAATTTTTACT TERM 1472 1348144 - 1348127 - R 100 -12.7 -5.37043 | opp_overlap 1348127 1348120 AGCCGATATAAAAAA GCCTCCC ATGT GGGAGGC TTTGGAATTTTTACT TERM 1473 1348332 - 1348315 - R 89 -9.1 -4.72272 | opp_overlap 1348315 1348318 TTTTTGCATTAAAAA GCGCACC CGAA GATGCGC TTTGCGTGTAAATTT Shal_1108 1348720 - 1348358 - | sigma 54 modulation protein/ribosomal protein S30EA TERM 1474 1348778 - 1348793 + H 78 -7.6 -4.43221 | opp_overlap 1348777 ATTAGATAGGAAAGT CGTGAT CTAA ATCACG TTTTGTGGGCTATTT Shal_1109 1349030 - 1349722 + | cytochrome B561 TERM 1475 1349734 - 1349769 + T 83 -10.6 -3.68351 | opp_overlap 1349739, overlap 1349739 1349743 GTAGTTTATCGAAGA TAAAATTAAGCCTGTC TGAT GACAGGCTTAATCTGA TTTAACTAATCAAAA TERM 1476 1349764 - 1349739 - T 100 -14.9 -4.68724 | opp_overlap 1349734 1349739 1349743 TTATCGAAGATAAAA TTAAGCCTGTC TGAT GACAGGCTTAA TCTGATTTAACTAAT TERM 1477 1349739 - 1349764 + T 100 -14.9 -3.02591 | opp_overlap 1349739, overlap 1349734 1349743 TTATCGAAGATAAAA TTAAGCCTGTC TGAT GACAGGCTTAA TCTGATTTAACTAAT TERM 1478 1349743 - 1349760 + T 85 -11.3 -3.35344 | opp_overlap 1349739, overlap 1349739 1349734 CGAAGATAAAATTAA GCCTGTC TGAT GACAGGC TTAATCTGATTTAAC Shal_1110 1350248 - 1349787 - | cytochrome c class II Shal_1111 1350475 - 1350750 + | Trp operon repressor Shal_1112 1351205 - 1350804 - | hypothetical protein TERM 1479 1351008 - 1351020 + g 83 -9.1 -4.37211 | opp_overlap 1351006 CTCGTAGATAAAGGT GGGCA GTT TGCCC TTTCTTCTACGTTTC TERM 1480 1351214 - 1351227 + r 77 -5.3 -4.84017 | opp_overlap 1351205 ATAACATTTGCAGTT CCTTT GCAA AAAGG TTTTTCTGAGCAATT TERM 1481 1351308 - 1351279 - R 87 -6.4 -5.34555 | GTAGACCATAAAAAA GCCCGCTTCATT TAAATC AGTGAAGTGGGC TCAAATTCATTCTAA Shal_1113 1351958 - 1351338 - | peptidylprolyl isomerase FKBP-type TERM 1482 1352638 - 1352602 - H 82 -7.9 -4.53034 | opp_overlap 1352608, overlap 1352586 1352604 1352608 CTGATATAAGTAAAA TATCAAGCCCGCTCCCC CAA AAGGAGCGGGCTTTTTT GTTTCTTAGGTGGCG TERM 1483 1352636 - 1352604 - H 84 -10.5 -3.86903 | opp_overlap 1352608, overlap 1352586 1352602 1352608 GATATAAGTAAAATA TCAAGCCCGCTCCCC CAA AAGGAGCGGGCTTTT TTGTTTCTTAGGTGG TERM 1484 1352632 - 1352608 - H 100 -15.7 -3.57572 | opp_overlap 1352608, overlap 1352604 1352602 TAAGTAAAATATCAA GCCCGCTCCCC CAA AAGGAGCGGGC TTTTTTGTTTCTTAG TERM 1485 1352608 - 1352632 + H 100 -14.3 -5.80003 | opp_overlap 1352608 1352604 1352602 TAAGTAAAATATCAA GCCCGCTCC CCCAAAA GGAGCGGGC TTTTTTGTTTCTTAG Shal_1114 1352672 - 1355137 + | bifunctional aspartokinase I/homeserine dehydrogenase I TERM 1486 1355890 - 1355879 - g 74 -7.2 -4.28651 | overlap 1355872 1355871 ATCAAAATGCTAAAA CGGC TTTA GCCG AGTTAGGTATGTTCA Shal_1115 1355134 - 1356069 + | homoserine kinase TERM 1487 1357391 - 1357371 - g 71 -6.9 -4.07568 | opp_overlap 1357370 1357374, overlap 1357374 TTTGCGCTGTTAAAA CAACATCTT TTC AAGGTGTTG CTAGATTAACTGGGC Shal_1116 1356114 - 1357400 + | threonine synthase TERM 1488 1357445 - 1357463 + F 100 -6.7 -5.84381 | opp_overlap 1357445 ATGTTACTTAAATAA GGAAGCT GTTAA GGCTTCC TTTTTTTGTTGATAA Shal_1117 1357669 - 1357959 + | hypothetical protein Shal_1118 1358831 - 1357977 - | apurinic endonuclease Apn1 TERM 1489 1358706 - 1358718 + g 74 -5.5 -4.72272 | GAGGTCATTCGCCTG CCAGC GAC GTTGG TTTTTGGTAAACAGA TERM 1490 1359323 - 1359297 - g 75 -6.6 -4.48333 | opp_overlap 1359322, overlap 1359298 1359322 ACATATCAATGAAAA GCTGACTTCTGA GCA TCAGAAGTTAGG CGAGGCCTCCGCGTC TERM 1491 1359322 - 1359298 - g 71 -10.1 -3.27915 | overlap 1359297 CATATCAATGAAAAG CTGACTTCTGA GCA TCAGAAGTTAG GCGAGGCCTCCGCGT Shal_1119 1359061 - 1359612 + | hemerythrin HHE cation binding domain-containing protein TERM 1492 1359686 - 1359654 - T 77 -7.7 -4.25104 | opp_overlap 1359657 1359659, overlap 1359659 GTTGTTCGAGTAAAA TTAAAGAAGAGCGCT TTA AGCGCTCTTCTATTT GGTTTTACATCAGGA TERM 1493 1359657 - 1359683 + T 100 -13.8 -4.21922 | opp_overlap 1359654 1359659, overlap 1359659 GTTCGAGTAAAATTA AAGAAGAGCGCT TTA AGCGCTCTTCTA TTTGGTTTTACATCA TERM 1494 1359681 - 1359659 - T 100 -16.4 -4.23781 | opp_overlap 1359657 1359659, overlap 1359654 TCGAGTAAAATTAAA GAAGAGCGCT TTA AGCGCTCTTC TATTTGGTTTTACAT TERM 1495 1359659 - 1359681 + T 100 -16.4 -3.70102 | opp_overlap 1359659 1359654, overlap 1359657 TCGAGTAAAATTAAA GAAGAGCGCT TTA AGCGCTCTTC TATTTGGTTTTACAT Shal_1120 1359876 - 1359691 - | hypothetical protein TERM 1496 1360083 - 1360054 - R 100 -13.1 -5.00616 | opp_overlap 1360054 1360061, overlap 1360061 CTTGGCTGTAAAAAA CAAAAAAGCCAGT AGAA ACTGGCTTTTTTA TAGCTTGAGTACGAG TERM 1497 1360054 - 1360083 + r 76 -10.9 -2.54896 | opp_overlap 1360054 1360061, overlap 1360061 CTTGGCTGTAAAAAA CAAAAAAGCCAGT AGAA ACTGGCTTTTTTA TAGCTTGAGTACGAG TERM 1498 1360076 - 1360061 - R 100 -9 -6.04324 | opp_overlap 1360054 1360061, overlap 1360054 GTAAAAAACAAAAAA GCCAGT AGAA ACTGGC TTTTTTATAGCTTGA TERM 1499 1360061 - 1360076 + r 93 -9 -5.31456 | opp_overlap 1360061 1360054, overlap 1360054 GTAAAAAACAAAAAA GCCAGT AGAA ACTGGC TTTTTTATAGCTTGA Shal_1121 1361737 - 1360100 - | glucose-6-phosphate isomerase TERM 1500 1361572 - 1361560 - G 84 -7.7 -4.88918 | opp_overlap 1361560 1361564 1361566, overlap 1361567 CCAGCTTAAATAAAA GAGAC ATC GTCTC TTGTGAGGCGCGGTT Shal_1122 1362710 - 1361754 - | transaldolase B TERM 1501 1362972 - 1362948 - R 91 -7.8 -5.23316 | opp_overlap 1362948 1362971 CATCATATTAAAAAA GCCCACGGTT GTGAT AGCCGTGAGC TTTTGGTAAAGAGCA TERM 1502 1362948 - 1362972 + r 82 -8.5 -4.25104 | opp_overlap 1362948, overlap 1362971 CATCATATTAAAAAA GCCCACGGTTG TGA TAGCCGTGAGC TTTTGGTAAAGAGCA Shal_1123 1364090 - 1362993 - | OmpA/MotB domain-containing protein TERM 1503 1364273 - 1364291 + r 100 -14.6 -4.00348 | opp_overlap 1364273 AGTTGCATAAAAAAA GGGCGCTT TAA AAGCGCCC TTTGATTGATTGAAA TERM 1504 1364291 - 1364273 - R 100 -14.6 -5.61596 | opp_overlap 1364273 AGTTGCATAAAAAAA GGGCGCTT TAA AAGCGCCC TTTGATTGATTGAAA Shal_1124 1366698 - 1364332 - | putative phosphoketolase TERM 1505 1365251 - 1365225 - G 83 -8.8 -4.20516 | opp_overlap 1365232, overlap 1365228 CGGCCATTGAAGAAA CAACTTGTGAGA ACG CCTCATAAGTTG GGAACATGGCATGGC TERM 1506 1367156 - 1367169 + G 70 -5.3 -4.40237 | overlap 1367141 CTTTCTCAATGCGCT GCTTT GGGG AAAGC TTTTAGTATATGGTC Shal_1125 1367121 - 1368602 + | amino acid carrier protein TERM 1507 1368661 - 1368625 - f 80 -11 -3.44051 | opp_overlap 1368634, overlap 1368634 GTTTTATCAGTACAA TCTAAAAAACCACGCT GTTTA AGCGTGGTTTTTTTGT TTTTGTTCAGTATCA TERM 1508 1368634 - 1368652 + F 100 -10.3 -6.23317 | opp_overlap 1368634 1368625 GTACAATCTAAAAAA CCACGCT GTTTA AGCGTGG TTTTTTTGTTTTTGT TERM 1509 1368652 - 1368634 - f 100 -10.3 -5.1925 | opp_overlap 1368634, overlap 1368625 GTACAATCTAAAAAA CCACGCT GTTTA AGCGTGG TTTTTTTGTTTTTGT Shal_1126 1368711 - 1369484 + | hypothetical protein TERM 1510 1369809 - 1369824 + F 72 -9 -3.30619 | opp_overlap 1369811 CTAAATGTCGCAATG CAGCCT CCTA AGGCTG TTATCACGAGTGGTT Shal_1127 1370298 - 1370612 + | ArsR family transcriptional regulator TERM 1511 1370704 - 1370723 + T 100 -8.6 -5.72616 | opp_overlap 1370704, overlap 1370706 ATAATGGATGACTAA TGGAGAGG CTTG CCTCTCTA TTTTTTTGTCTGAAT TERM 1512 1370706 - 1370721 + T 88 -9 -4.50122 | opp_overlap 1370704, overlap 1370704 AATGGATGACTAATG GAGAGG CTTG CCTCTC TATTTTTTTGTCTGA TERM 1513 1370775 - 1370817 + T 90 -12.3 -3.57263 | gap 1, opp_overlap 1370782 1370790, overlap 1370782 1370790 TGTGTACTGGAAATT GCAGATATAAAAAAACCGGC CAAG GCCGGTTTTTTTC-ATTTGC TTTAAAGCTAAAGAT TERM 1514 1370782 - 1370812 + T 88 -10.7 -4.06502 | gap 1, opp_overlap 1370782 1370790, overlap 1370775 1370790 TGGAAATTGCAGATA T-AAAAAAACCGGC CAAG GCCGGTTTTTTTCA TTTGCTTTAAAGCTA TERM 1515 1370811 - 1370782 - T 84 -12.3 -2.9348 | opp_overlap 1370782 1370775 1370790, overlap 1370790 TGGAAATTGCAGATA TAAAAAAACCGGC CAAG GCCGGTTTTTTTC ATTTGCTTTAAAGCT TERM 1516 1370790 - 1370803 + T 100 -9.5 -5.73563 | opp_overlap 1370782 1370790, overlap 1370782 1370775 GCAGATATAAAAAAA CCGGC CAAG GCCGG TTTTTTTCATTTGCT TERM 1517 1370803 - 1370790 - T 100 -9.5 -5.76633 | opp_overlap 1370790 1370782 1370775, overlap 1370782 GCAGATATAAAAAAA CCGGC CAAG GCCGG TTTTTTTCATTTGCT Shal_1128 1371098 - 1370832 - | 30S ribosomal protein S20 Shal_1129 1371355 - 1372914 + | integral membrane protein MviN TERM 1518 1373018 - 1373056 + G 70 -9.7 -3.04792 | opp_overlap 1373019, overlap 1373021 1373026 TAATATTTTGCCGAA ACATCGAGGTTGCGTAT TAAGC ATAGGCAACTTCGATGG TGTTCACCGTGGTCA TERM 1519 1373055 - 1373019 - g 82 -11 -3.54307 | opp_overlap 1373018 1373021 1373026 AATATTTTGCCGAAA CATCGAGGTTGCGTAT TAAGC ATAGGCAACTTCGATG GTGTTCACCGTGGTC TERM 1520 1373121 - 1373103 - g 72 -3.1 -5.00616 | opp_overlap 1373113 CGGCTCGTGAAAAAA GCAAAAC ATTTA GGTTTGC CTGCTGTTGTAATGA TERM 1521 1373340 - 1373354 + G 72 -2.8 -5.07652 | GGTGTGAAGTACCTA GTTGTT GGC GACGAC TTTTGTTTTGGGAAG Shal_1130 1372980 - 1373915 + | riboflavin biosynthesis protein RibF Shal_1131 1373947 - 1376769 + | isoleucyl-tRNA synthetase TERM 1522 1376802 - 1376780 - f 95 -13.5 -3.77722 | opp_overlap 1376780, overlap 1376783 CTTAATCAGTAATAA CAACGGCTC TTTAG GAGCCGTTG TTTTTTTTGTGTTCT TERM 1523 1376780 - 1376802 + F 100 -14.2 -6.12328 | opp_overlap 1376780 1376783 CTTAATCAGTAATAA CAACGGCTCT TTA GGAGCCGTTG TTTTTTTTGTGTTCT TERM 1524 1376799 - 1376783 - f 86 -9.4 -4.01047 | opp_overlap 1376780, overlap 1376780 AATCAGTAATAACAA CGGCTC TTTAG GAGCCG TTGTTTTTTTTGTGT Shal_1132 1376891 - 1377403 + | lipoprotein signal peptidase Shal_1133 1377409 - 1377831 + | peptidylprolyl isomerase FKBP-type Shal_1134 1377834 - 1378763 + | hydroxymethylbutenyl pyrophosphate reductase TERM 1525 1378823 - 1378798 - f 88 -9.1 -4.53439 | opp_overlap 1378804 1378821, overlap 1378804 CCAAACTGAAATAAA TAAAAAGAGGC TTAG GCCTCTTTTTT TTGCTTAAAAATTAG TERM 1526 1378804 - 1378817 + F 100 -8.1 -5.95166 | opp_overlap 1378798 1378804 TGAAATAAATAAAAA GAGGC TTAG GCCTC TTTTTTTTGCTTAAA TERM 1527 1378817 - 1378804 - f 100 -8.1 -5.5454 | opp_overlap 1378804, overlap 1378798 TGAAATAAATAAAAA GAGGC TTAG GCCTC TTTTTTTTGCTTAAA Shal_1135 1379009 - 1379530 + | type IV pilus modification protein PilV Shal_1136 1379531 - 1380511 + | prepilin-type cleavage/methylation-like protein Shal_1137 1380524 - 1380958 + | type IV pilus assembly protein PilX TERM 1528 1382406 - 1382429 + G 72 -8.8 -3.61398 | gap 1, overlap 1382421 ACGATTGGCTTTTCC GATGGC-GCCG ATG CGGCTGCCACC TTATTAGAGGAGGCG TERM 1529 1382421 - 1382446 + G 70 -8.9 -3.32268 | overlap 1382406 GATGGCGCCGATGCG GCTGCCACCTT ATTA GAGGAGGCGGC TTATCGAGGTGGTTA Shal_1138 1380963 - 1384559 + | type IV pilin biogenesis protein, putative TERM 1530 1384894 - 1384874 - g 73 -9.7 -3.33315 | GCAATAGGCGCACAA GCTAGTCGA GAC TCGACTTGC GCTACGATAACTCTG Shal_1139 1384562 - 1384951 + | methylation site containing protein Shal_1140 1384951 - 1385259 + | hypothetical protein Shal_1141 1385877 - 1385386 - | methylation site containing protein Shal_1142 1386533 - 1386018 - | general secretion pathway protein H Shal_1143 1386779 - 1387117 + | nitrogen regulatory protein P-II TERM 1531 1387123 - 1387172 + T 79 -8.7 -4.02762 | overlap 1387124 AGCGGTATAGCATTG AGCGACTTTTTCGCATTATCTGC TTTT GCAAATAATGCGAAGAAGTAGAG TTCTGTTTTCGTTAA TERM 1532 1387124 - 1387171 + T 82 -12.2 -3.00572 | overlap 1387123 GCGGTATAGCATTGA GCGACTTTTTCGCATTATCTGC TTTT GCAAATAATGCGAAGAAGTAGA GTTCTGTTTTCGTTA Shal_1144 1388200 - 1387184 - | LacI family transcription regulator TERM 1533 1388344 - 1388357 + H 76 -3.1 -5.1861 | TAGCAATGATAAGCT GGCAA CTTT TTGTC TTTTTTCGTCATAAC Shal_1145 1388622 - 1391249 + | TonB-dependent receptor plug TERM 1534 1391277 - 1391294 + F 100 -12.7 -5.07486 | opp_overlap 1391277 AGTCGTAACCTAAAA GCCCAGC ATTT GCTGGGC TTTTTATTGAAAATA TERM 1535 1391294 - 1391277 - f 100 -12.7 -4.27584 | opp_overlap 1391277 AGTCGTAACCTAAAA GCCCAGC ATTT GCTGGGC TTTTTATTGAAAATA Shal_1146 1391406 - 1392932 + | tryptophan halogenase Shal_1147 1393719 - 1392991 - | SapC family protein TERM 1536 1394225 - 1394253 + H 100 -10.3 -5.71712 | overlap 1394226 CCCAGAAACTAGCGT GGGCCGAGTAC TTTATGT GTACTCGGCCA TTTTTTTATCTGGCA TERM 1537 1394226 - 1394252 + H 100 -13.8 -4.01943 | overlap 1394225 CCAGAAACTAGCGTG GGCCGAGTAC TTTATGT GTACTCGGCC ATTTTTTTATCTGGC Shal_1148 1394433 - 1397138 + | Beta-N-acetylhexosaminidase TERM 1538 1397192 - 1397218 + F 100 -13.8 -6.07969 | opp_overlap 1397196 GCCGTTAAGCTTGAA CGTAGCAGTGCT AAA GGCATTGCTACG TTTTTTTTGCTTTTA TERM 1539 1397270 - 1397257 - f 83 -5.3 -5.20328 | opp_overlap 1397257 GTTTAAAAAAACAAA TGACA ACGC TGTCA TTACTGTTGTAACAT Shal_1149 1397379 - 1398275 + | ATPase BadF/BadG/BcrA/BcrD type Shal_1150 1398351 - 1399484 + | N-acetylglucosamine-6-phosphate deacetylase Shal_1151 1399603 - 1400799 + | hypothetical protein TERM 1540 1400890 - 1400901 + F 72 -4.4 -4.78107 | opp_overlap 1400890 TATTTGAGTATAAAT GACA GCGT TGTC TTTTTGGTCGTAATG Shal_1152 1401086 - 1402399 + | glucose/galactose transporter TERM 1541 1402456 - 1402441 - T 84 -10.4 -3.93695 | opp_overlap 1402441 TGGAGCAGTTATAAA GGAGCC TAAG GGCTCC TTTTTTGTTTTTAGT TERM 1542 1402441 - 1402456 + T 100 -10.4 -5.95286 | opp_overlap 1402441 TGGAGCAGTTATAAA GGAGCC TAAG GGCTCC TTTTTTGTTTTTAGT TERM 1543 1402957 - 1402941 - T 100 -12.3 -5.4251 | opp_overlap 1402941 TGCAGATACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTATG TERM 1544 1402941 - 1402957 + T 100 -12.3 -5.98675 | opp_overlap 1402941 TGCAGATACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTATG TERM 1545 1403132 - 1403148 + T 70 -9.5 -2.62616 | opp_overlap 1403134, overlap 1403134 TCGAACCAGGGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 1546 1403689 - 1403673 - T 100 -12.3 -5.4251 | opp_overlap 1403673 TGCAGATACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTATG TERM 1547 1403673 - 1403689 + T 100 -12.3 -5.98675 | opp_overlap 1403673 TGCAGATACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTATG TERM 1548 1403864 - 1403880 + T 70 -9.5 -2.62616 | opp_overlap 1403866, overlap 1403866 TCGAACCAGGGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 1549 1404330 - 1404314 - T 100 -12.3 -5.4251 | opp_overlap 1404314 TGCAGATACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTATG TERM 1550 1404314 - 1404330 + T 100 -12.3 -5.98675 | opp_overlap 1404314 TGCAGATACAAAAAA GCCACTC AGT GAGTGGC TTTTTTGTTTTTATG TERM 1551 1404505 - 1404521 + T 70 -9.5 -2.62616 | opp_overlap 1404507, overlap 1404507 TCGAACCAGGGACAC GAGGATT TTC AATCCTC TGCTCTACCGACTGA TERM 1552 1404871 - 1404841 - T 100 -14.9 -5.27335 | opp_overlap 1404841 GTTGGCAAATAAAAA GACGCCGCTTAAA TTAAC TTTAAGCGACGTC TTATTTGGATTTAAA TERM 1553 1404841 - 1404871 + T 93 -12.7 -4.05026 | opp_overlap 1404841 GTTGGCAAATAAAAA GACGCCGCTTAAA TTAAC TTTAAGCGACGTC TTATTTGGATTTAAA Shal_1153 1405179 - 1404901 - | hypothetical protein Shal_1154 1406246 - 1405182 - | A/G-specific adenine glycosylase Shal_1155 1406497 - 1407210 + | tRNA (guanine-N(7))-methyltransferase Shal_1156 1407261 - 1407587 + | hypothetical protein TERM 1554 1407760 - 1407738 - g 76 -12 -2.52742 | opp_overlap 1407738, overlap 1407737 1407735 ACGGTGTCACAATAG GGGCTGGAGA TTA TCTCGAGCCC TTTTCAATTCAGAGT TERM 1555 1407738 - 1407760 + G 95 -12 -4.27584 | opp_overlap 1407738 1407737 1407735 ACGGTGTCACAATAG GGGCTGGAGA TTA TCTCGAGCCC TTTTCAATTCAGAGT Shal_1157 1407587 - 1408501 + | glutaminase Shal_1158 1408746 - 1409561 + | hypothetical protein Shal_1159 1409893 - 1410834 + | LysR family transcriptional regulator TERM 1556 1410934 - 1410972 + F 95 -12.9 -3.74224 | gap 1, opp_overlap 1410947 1410953 TAATCCTTGTTACTC GTTATTTAGTTAA-GCTA AATT TAGCCTTAACTAAATAAC TTTAAATCATTTCGG TERM 1557 1411178 - 1411203 + F 100 -14.9 -5.26119 | TCACCTAGTTTGGTT TACCCCGATTA CTTA TAATCGGGGTA TTTTCTTTTTGGGGG TERM 1558 1412460 - 1412447 - g 77 -3.7 -5.19879 | opp_overlap 1412451, overlap 1412449 1412451 TTTTAAACAGAAAAA GGCAC TGTG GAGCC GCAGTGTTAGGGGGC Shal_1160 1411596 - 1413536 + | hypothetical protein Shal_1161 1414731 - 1413613 - | C4-dicarboxylate transporter/malic acid transport protein TERM 1559 1414166 - 1414144 - G 71 -7.1 -4.02571 | gap 1, overlap 1414132 CAAGGCACTAAACAA GCTAATGCCA AACA TGGCAT-AGC AGGCATAAAGCAGCG Shal_1162 1415185 - 1415442 + | hypothetical protein TERM 1560 1416471 - 1416441 - g 100 -17 -2.98823 | opp_overlap 1416448, overlap 1416445 TTCCTTCTACACATA GAAACGAGCCATTG TAC CAATGGCTCGTTGC ACTCATAAAGTCACT TERM 1561 1416467 - 1416445 - g 100 -16.4 -4.17296 | opp_overlap 1416448, overlap 1416441 TTCTACACATAGAAA CGAGCCATTG TAC CAATGGCTCG TTGCACTCATAAAGT TERM 1562 1416448 - 1416464 + G 73 -10.9 -2.74012 | opp_overlap 1416445 1416441 TACACATAGAAACGA GCCATTG TAC CAATGGC TCGTTGCACTCATAA Shal_1163 1415621 - 1416505 + | LysR family transcriptional regulator Shal_1164 1418149 - 1416563 - | cytochrome bd ubiquinol oxidase subunit I TERM 1563 1417980 - 1417960 - G 95 -12.7 -3.97022 | opp_overlap 1417960 TTAATACAAAGACAA TTGGCAAAC ACA GTTTGCCAA TAAATTGGGCTGCCG TERM 1564 1417960 - 1417980 + g 78 -12.7 -2.53876 | opp_overlap 1417960 TTAATACAAAGACAA TTGGCAAAC ACA GTTTGCCAA TAAATTGGGCTGCCG TERM 1565 1418352 - 1418328 - R 87 -8.5 -4.59984 | opp_overlap 1418325, overlap 1418330 AAAAGTCATACAAAA TAGGCCACAAC AGT GTTGTGGCCGG TGATACTTTCTGACT TERM 1566 1418350 - 1418330 - R 100 -15.5 -3.89301 | opp_overlap 1418325, overlap 1418328 AAGTCATACAAAATA GGCCACAAC AGT GTTGTGGCC GGTGATACTTTCTGA TERM 1567 1418360 - 1418384 + r 100 -13.7 -4.06562 | overlap 1418361 1418374 GTGGCCGGTGATACT TTCTGACTCAG AGC CTGAGTCAGAG TTTCTAGTTCAGATT TERM 1568 1418361 - 1418383 + r 100 -15 -3.03214 | overlap 1418360 1418374 TGGCCGGTGATACTT TCTGACTCAG AGC CTGAGTCAGA GTTTCTAGTTCAGAT Shal_1165 1420299 - 1418431 - | hypothetical protein Shal_1166 1421591 - 1420455 - | putative oxygen-independent coproporphyrinogen III oxidase TERM 1569 1421370 - 1421356 - G 86 -11.4 -3.76402 | ACTTCAGTCAGTAAA CGCGCA ATG TGCGCG GCATCAAACAAAGAG Shal_1167 1422190 - 1421591 - | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase TERM 1570 1422272 - 1422294 + r 79 -3.3 -5.46698 | opp_overlap 1422276, overlap 1422274 1422276 GTCAAAGCGTATAAA AAAAGGGGC GCTAG GCCCCTGTG TTTTTTAATTTTCAC TERM 1571 1422274 - 1422292 + r 70 -5.9 -4.35313 | opp_overlap 1422276, overlap 1422272 1422276 CAAAGCGTATAAAAA AAGGGGC GCTAG GCCCCTG TGTTTTTTAATTTTC TERM 1572 1422290 - 1422276 - R 100 -8.5 -5.63504 | opp_overlap 1422276 1422274 1422272 AAGCGTATAAAAAAA GGGGC GCTAG GCCCC TGTGTTTTTTAATTT TERM 1573 1422276 - 1422290 + r 73 -8.5 -3.73212 | opp_overlap 1422276, overlap 1422274 1422272 AAGCGTATAAAAAAA GGGGC GCTAG GCCCC TGTGTTTTTTAATTT Shal_1168 1422750 - 1422316 - | hypothetical protein Shal_1169 1423106 - 1422834 - | hypothetical protein TERM 1574 1422985 - 1423015 + g 81 -4.8 -5.10064 | gap 1, overlap 1422987 AGGTGGGCATTGGCT TTGCCGTCGACAG GTGGGG CTGT-GATGGCGA TTTTTATCTCTTCAC TERM 1575 1423084 - 1423105 + g 71 -10.1 -3.21747 | overlap 1423085 TGAATATAGAGTTGC AGCAGCAGG TCAC CCTGCTGCA TTAGTGCTGGAGTCA TERM 1576 1423085 - 1423104 + g 83 -13.6 -2.52834 | overlap 1423084 GAATATAGAGTTGCA GCAGCAGG TCAC CCTGCTGC ATTAGTGCTGGAGTC Shal_1170 1423669 - 1423121 - | protein of unknown function YGGT TERM 1577 1423607 - 1423578 - G 71 -3.5 -4.84017 | overlap 1423579 AATGGGTTATAAAAA TCGGCTTTGGCTA ATTG TAGCCAAATACGC AATACCACGACCATC Shal_1171 1424523 - 1423705 - | pyrroline-5-carboxylate reductase Shal_1172 1425377 - 1424676 - | alanine racemase domain-containing protein TERM 1578 1425036 - 1425058 + g 74 -3.5 -5.03314 | CATTGATTCAGGACG TTGCTCA TTAAGCCTC TGAGCAA TTTTTTCACGCTCGA Shal_1173 1425413 - 1426450 + | twitching motility protein Shal_1174 1426489 - 1427601 + | twitching motility protein TERM 1579 1427647 - 1427621 - f 87 -12.4 -3.44229 | opp_overlap 1427623, overlap 1427623 AGTGGATTATTAGAA GACTGGCAATAC CTT GTATTGCCAGTT TTTTTTGAGTCATAA TERM 1580 1427645 - 1427623 - f 100 -15 -3.29273 | opp_overlap 1427623, overlap 1427621 TGGATTATTAGAAGA CTGGCAATAC CTT GTATTGCCAG TTTTTTTTGAGTCAT TERM 1581 1427623 - 1427645 + F 100 -15 -5.82316 | opp_overlap 1427623 1427621 TGGATTATTAGAAGA CTGGCAATAC CTT GTATTGCCAG TTTTTTTTGAGTCAT Shal_1175 1427710 - 1428723 + | ferrochelatase TERM 1582 1428767 - 1428802 + T 95 -13.4 -3.75657 | opp_overlap 1428771, overlap 1428771 1428790 TGTCTACTTAGTGAG AAAAGGGAGCCACTAT GCAA ATAGTGGCTCCCTTAA TTATTAAGTCTTTAG TERM 1583 1428771 - 1428798 + T 100 -18.6 -3.55304 | opp_overlap 1428771, overlap 1428767 1428790 TACTTAGTGAGAAAA GGGAGCCACTAT GCAA ATAGTGGCTCCC TTAATTATTAAGTCT TERM 1584 1428798 - 1428771 - T 100 -18.6 -4.431 | opp_overlap 1428771 1428767 1428790 TACTTAGTGAGAAAA GGGAGCCACTAT GCAA ATAGTGGCTCCC TTAATTATTAAGTCT Shal_1176 1429245 - 1428823 - | Holliday junction resolvase-like protein Shal_1177 1429870 - 1429298 - | hypothetical protein Shal_1178 1430211 - 1429882 - | translation initiation factor Sui1 Shal_1179 1430661 - 1430341 - | hypothetical protein Shal_1180 1430826 - 1431386 + | hypothetical protein TERM 1585 1431449 - 1431478 + T 100 -16.7 -4.09685 | opp_overlap 1431457, overlap 1431457 CAACTTATCTAGCTT TAAAAAAACGGCC ATCA GGCCGTTTTTTTA TTTTCAGCCCTAAAC TERM 1586 1431457 - 1431470 + T 100 -9.5 -6.09196 | opp_overlap 1431457, overlap 1431449 CTAGCTTTAAAAAAA CGGCC ATCA GGCCG TTTTTTTATTTTCAG TERM 1587 1431470 - 1431457 - T 100 -9.5 -5.42259 | opp_overlap 1431449 1431457 CTAGCTTTAAAAAAA CGGCC ATCA GGCCG TTTTTTTATTTTCAG TERM 1588 1431512 - 1431493 - T 72 -8.6 -3.57263 | opp_overlap 1431493 ATTTTCAGCCCTAAA CCACCTAC TTGA GTAGATGG TTATCATCAATTAGG TERM 1589 1431804 - 1431818 + T 75 -10 -3.06265 | opp_overlap 1431804 1431803, overlap 1431799 AGCAGGATAGGAAAG CTCCCT TCT AGGGAG TCTGCTTTGTAACAT TERM 1590 1431818 - 1431804 - T 73 -10 -2.91668 | opp_overlap 1431799 1431804, overlap 1431803 AGCAGGATAGGAAAG CTCCCT TCT AGGGAG TCTGCTTTGTAACAT TERM 1591 1431843 - 1431864 + T 79 -8.7 -3.98913 | opp_overlap 1431847, overlap 1431844 TAACATATGGGTTAA GCCACCTTC TTCA GAAGGTGGA TTCTTTACATCTCCA TERM 1592 1431844 - 1431863 + T 82 -12.2 -2.98866 | opp_overlap 1431847, overlap 1431843 AACATATGGGTTAAG CCACCTTC TTCA GAAGGTGG ATTCTTTACATCTCC Shal_1181 1432939 - 1432061 - | LysR family transcriptional regulator Shal_1182 1433024 - 1433437 + | transmembrane pair domain-containing protein TERM 1593 1433485 - 1433463 - f 100 -16.4 -5.055 | opp_overlap 1433463 TTAATTGTGAAAAAA CCGCTGTTAC CCA GTAACAGCGG TTTTTTTCTGTAGGT TERM 1594 1433463 - 1433485 + F 100 -16.4 -5.72616 | opp_overlap 1433463 TTAATTGTGAAAAAA CCGCTGTTAC CCA GTAACAGCGG TTTTTTTCTGTAGGT Shal_1183 1433681 - 1435597 + | TonB-dependent receptor plug Shal_1184 1435899 - 1436498 + | OmpA/MotB domain-containing protein Shal_1185 1436528 - 1437352 + | MscS mechanosensitive ion channel TERM 1595 1437384 - 1437413 + T 93 -13.7 -3.25204 | opp_overlap 1437390, overlap 1437390 TGGTCAGTAGGTAAT AAAAAAGGTCGGC ATAT GCCGACCTTTTTC TCTCTTTCAAACTAG TERM 1596 1437407 - 1437390 - T 100 -12.7 -5.4833 | opp_overlap 1437384 1437390 GTAGGTAATAAAAAA GGTCGGC ATAT GCCGACC TTTTTCTCTCTTTCA TERM 1597 1437390 - 1437407 + T 100 -12.7 -5.14985 | opp_overlap 1437390, overlap 1437384 GTAGGTAATAAAAAA GGTCGGC ATAT GCCGACC TTTTTCTCTCTTTCA Shal_1186 1438083 - 1437445 - | hypothetical protein TERM 1598 1437985 - 1437996 + g 70 -2.2 -5.08824 | TATGACTACACCAAA CAGG TCCA TCTG TTTTTTACCTGCAGC TERM 1599 1438121 - 1438106 - H 70 -3.2 -4.9138 | opp_overlap 1438106 ACTAGCTAAATAAAA GGAAGA TGAT TCTGCC TCTTTTTACGCCAAA Shal_1187 1438422 - 1439438 + | threonine aldolase TERM 1600 1439463 - 1439491 + T 100 -13.3 -4.72272 | opp_overlap 1439469, overlap 1439469 ACTTATCTTAAATAT AAAAAACCTAGGC TAA GCCTAGGTTTTTG TTTTTAGTCACAAAC TERM 1601 1439485 - 1439469 - T 100 -12.3 -5.56264 | opp_overlap 1439469 1439463 CTTAAATATAAAAAA CCTAGGC TAA GCCTAGG TTTTTGTTTTTAGTC TERM 1602 1439469 - 1439485 + T 100 -12.3 -5.65496 | opp_overlap 1439469, overlap 1439463 CTTAAATATAAAAAA CCTAGGC TAA GCCTAGG TTTTTGTTTTTAGTC Shal_1188 1439744 - 1439535 - | hypothetical protein TERM 1603 1440224 - 1440266 + r 76 -10.7 -2.5602 | gap 2, overlap 1440220 AGTCCGTCCTTGGAA GCT-CGGCCATGA-CGTCCAT GTC ATGGACGGTCACGGCCGCATC TACATTGGATAATTG Shal_1189 1441516 - 1440983 - | hypothetical protein TERM 1604 1442292 - 1442278 - g 79 -4.2 -5.09895 | opp_overlap 1442280, overlap 1442280 GAGTCATTGAAAAAA CAGGTG CTA CACCTC ATTCAAACCAAGTAT TERM 1605 1442290 - 1442280 - g 71 -6.8 -4.17608 | opp_overlap 1442280, overlap 1442278 GTCATTGAAAAAACA GGTG CTA CACC TCATTCAAACCAAGT Shal_1190 1442059 - 1443582 + | integrase catalytic region TERM 1606 1443596 - 1443578 - T 71 -6 -4.14764 | opp_overlap 1443577 CCCTAAATAAGGAAA TCTAGCAT GAT AGGCTAGA CTATATAGTGAACGA TERM 1607 1443880 - 1443894 + T 71 -7.2 -3.9373 | TTGAGGGCTTTATCA TCAAAC GAA GTTTGA TTTGGCTTTTAGGTG TERM 1608 1444020 - 1443988 - T 78 -7.2 -4.386 | gap 2 CAATTTGGCAGAAAA TGTTGCTGGT-G-CTA AAC CAGACTACCAGCAACA TTCACAAAGCTTATT Shal_1191 1445335 - 1444034 - | FAD-dependent pyridine nucleotide-disulphide oxidoreductase Shal_1192 1445606 - 1445328 - | hypothetical protein TERM 1609 1445731 - 1445701 - R 100 -10.5 -5.19879 | opp_overlap 1445701, overlap 1445702 GTGTAAAGATAAAAA GCGGCATGCTCTA TGGGC TAAAGCATGCCGA CTATGATTAAAGCTT TERM 1610 1445730 - 1445702 - R 95 -14 -3.70843 | opp_overlap 1445701, overlap 1445701 TGTAAAGATAAAAAG CGGCATGCTCTA TGGGC TAAAGCATGCCG ACTATGATTAAAGCT Shal_1193 1446100 - 1445738 - | hypothetical protein TERM 1611 1447223 - 1447212 - g 88 -5.8 -5.61596 | AGTTGCAGAAAAAAA GCTG ATTT CAGC CCAACAAAACTTTTC Shal_1194 1446559 - 1447716 + | RND family efflux transporter MFP subunit TERM 1612 1448316 - 1448332 + G 72 -5.2 -4.55544 | opp_overlap 1448316 ATGGTGGTCAACCTA GTTTCA CCTAA TGAAAC TTTTGATTCTCTGTT TERM 1613 1449187 - 1449177 - g 71 -6.8 -4.12188 | overlap 1449180 GGATTATCGCCAAAA GAGG CGA CCTC TAAGGCGATGAAAGA TERM 1614 1450799 - 1450810 + G 81 -3.6 -5.37171 | GCGTTTTCGTGCGGT GCTG ATGA CGGC TTTTTCTTTCCTATT Shal_1195 1447887 - 1451045 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 1615 1451083 - 1451103 + T 93 -9 -5.24129 | opp_overlap 1451083 GTTGAGTAAGCTAAA GGTCTGCT TTGAT AGCAGGCC TTTTTTATGCCAGAG TERM 1616 1451244 - 1451263 + T 95 -13.6 -3.3858 | opp_overlap 1451244, overlap 1451233 GCTAGAAAGGAAAAA GCCCACTC CGAG GAGTGGGC TTCTAAGCTTGCTTT TERM 1617 1451263 - 1451244 - T 100 -13.6 -5.04601 | opp_overlap 1451233 1451244 GCTAGAAAGGAAAAA GCCCACTC CGAG GAGTGGGC TTCTAAGCTTGCTTT TERM 1618 1451429 - 1451419 - T 71 -4 -4.87665 | opp_overlap 1451404 TTTTACTTATAAAAA GTAA AAT TTAC AAATGATTATGTTCC Shal_1196 1452724 - 1451576 - | iron-containing alcohol dehydrogenase Shal_1197 1453573 - 1453055 - | hypothetical protein TERM 1619 1454078 - 1454059 - R 71 -9.4 -2.83641 | opp_overlap 1454059 1454057, overlap 1454051 1454066 TAATCGACTATTAGA GTTAACAG TTAA CTGTTAAC AATTAATAAGGGAGC TERM 1620 1454081 - 1454114 + r 88 -8.9 -4.64676 | opp_overlap 1454085 1454088, overlap 1454085 1454088 GTTAACTGTTAACAA TTAATAAGGGAGCCG GATT TGGCTCCCTTATCGG TTTTATTGGAGATAG TERM 1621 1454110 - 1454085 - R 95 -13.4 -3.53712 | opp_overlap 1454081 1454085 1454088, overlap 1454088 ACTGTTAACAATTAA TAAGGGAGCC GGATTT GGCTCCCTTA TCGGTTTTATTGGAG TERM 1622 1454085 - 1454110 + r 93 -14.1 -2.84841 | opp_overlap 1454085 1454088, overlap 1454081 1454088 ACTGTTAACAATTAA TAAGGGAGCCG GATT TGGCTCCCTTA TCGGTTTTATTGGAG TERM 1623 1454107 - 1454088 - R 86 -10.7 -3.89957 | opp_overlap 1454088 1454085 1454081, overlap 1454085 GTTAACAATTAATAA GGGAGCC GGATTT GGCTCCC TTATCGGTTTTATTG TERM 1624 1454088 - 1454107 + r 88 -11.4 -3.55907 | opp_overlap 1454085 1454088, overlap 1454085 1454081 GTTAACAATTAATAA GGGAGCCG GATT TGGCTCCC TTATCGGTTTTATTG Shal_1198 1457254 - 1454147 - | acriflavin resistance protein TERM 1625 1454918 - 1454932 + g 72 -5.7 -4.41616 | opp_overlap 1454918, overlap 1454914 AGTAATGGTATCTAA GGTGA TAAGT TCACC TTTGTTTGAGCGCAT TERM 1626 1455548 - 1455562 + g 83 -9.2 -4.36914 | CATACGGTTATAGCT GGTGCC TTC GGCGCC TTTTATAAAGGCAAA Shal_1199 1458358 - 1457255 - | RND family efflux transporter MFP subunit TERM 1627 1458171 - 1458160 - G 78 -5.8 -4.82901 | opp_overlap 1458161 1458167, overlap 1458161 GCGGTGCGATAAAAA CCGA TTGC TCGG CATCGAGTTTTCCTA TERM 1628 1458167 - 1458178 + g 72 -5.8 -4.4261 | opp_overlap 1458160 1458161, overlap 1458161 GATAAAAACCGATTG CTCG GCAT CGAG TTTTCCTATTAGAGA TERM 1629 1458614 - 1458588 - R 100 -15.4 -4.58395 | opp_overlap 1458588 1458592, overlap 1458592 GTCAGCCTGTAAAAA TAAAGCCAACAA AAA TTGTTGGCTTTA TTTGGATAGCATCAG TERM 1630 1458588 - 1458614 + r 100 -15.4 -3.65902 | opp_overlap 1458588 1458592, overlap 1458592 GTCAGCCTGTAAAAA TAAAGCCAACAA AAA TTGTTGGCTTTA TTTGGATAGCATCAG TERM 1631 1458610 - 1458592 - R 100 -11.8 -4.85782 | opp_overlap 1458588 1458592, overlap 1458588 GCCTGTAAAAATAAA GCCAACAA AAA TTGTTGGC TTTATTTGGATAGCA TERM 1632 1458592 - 1458610 + r 95 -11.8 -4.46112 | opp_overlap 1458592 1458588, overlap 1458588 GCCTGTAAAAATAAA GCCAACAA AAA TTGTTGGC TTTATTTGGATAGCA Shal_1200 1459719 - 1458649 - | metallophosphoesterase TERM 1633 1459358 - 1459373 + g 83 -4 -5.37865 | CCAAAGGCCCAGTTA TTATCG GCAT CGATGA TTTTTTGATTCTTAA TERM 1634 1459501 - 1459519 + g 72 -5.9 -4.52703 | opp_overlap 1459499 ATCACTGAGGATAGG CTGGGGC AGCTG GCCACAG TTTTCTGGTCGTTTA Shal_1201 1460873 - 1459791 - | acyltransferase 3 TERM 1635 1460802 - 1460789 - G 74 -8.1 -3.91882 | TGACGATAAATATAA TCGCG ATGC CGCGA AAGTGATTAATACTG TERM 1636 1461032 - 1461048 + r 77 -5.1 -4.90079 | ACCAAATGGTATTTT GGCATAA TTA TTAAGCC TTTTGTTATTGAGAT TERM 1637 1461192 - 1461177 - R 100 -10.4 -5.46657 | opp_overlap 1461177 TAGTGCAATAAAAAA GGAGGC CGAG GCCTCC TTTCAAATCGAGTGG TERM 1638 1461177 - 1461192 + r 79 -10.4 -3.60627 | opp_overlap 1461177 TAGTGCAATAAAAAA GGAGGC CGAG GCCTCC TTTCAAATCGAGTGG Shal_1202 1462881 - 1461214 - | putative ABC transporter ATP-binding protein TERM 1639 1463125 - 1463105 - H 79 -9.7 -3.73775 | GGGATTGTGATCAAA TGCGCTGTA GAA TACCGCGCA ACCCTATTACAAGAC TERM 1640 1463183 - 1463172 - g 72 -3 -5.055 | overlap 1463182 GTAATGCTGAAAAAA GATA TGAA TATC GCGGATTACGATCCA Shal_1203 1463160 - 1464416 + | glycine hydroxymethyltransferase TERM 1641 1464446 - 1464465 + F 100 -13.6 -5.3798 | TCAGGTAGACTCCAA TGGCCGCA TTTA TGCGGCCA TTTTTGTTCTTATTC Shal_1204 1464570 - 1465019 + | transcriptional regulator NrdR TERM 1642 1465164 - 1465144 - g 70 -5.3 -4.37886 | TGAGTTGGCACAAAA GGGCATGTA CAC CACCCGCCC AAATCCAAGTGTGGG Shal_1205 1465088 - 1466209 + | riboflavin biosynthesis protein RibD Shal_1206 1466213 - 1466878 + | riboflavin synthase subunit alpha Shal_1207 1467038 - 1468141 + | 3,4-dihydroxy-2-butanone 4-phosphate synthase TERM 1643 1468148 - 1468174 + F 93 -13.8 -3.18467 | opp_overlap 1468146 GCAGAATAAATACTG GCCTCAGGTTGA TTG TCAGCTTGAGGC TTAAATTCACACTTT TERM 1644 1468300 - 1468288 - g 72 -6.3 -4.21607 | TTTAGGTAAGATAAA TGAAC GTA GTTCA AGGTAATATCGAATC TERM 1645 1468334 - 1468322 - g 71 -3.3 -4.75174 | TATCGAATCGAAAAA CGCCA AAG TTGCG ATCGTAGTTTCACGT TERM 1646 1468591 - 1468607 + G 71 -9.5 -3.21464 | overlap 1468587 GTAATAAAGGATTGG CTCAAGT TGC ACTTGAG TTCGATATTCCTGTT Shal_1208 1468287 - 1468763 + | 6,7-dimethyl-8-ribityllumazine synthase Shal_1209 1468778 - 1469185 + | transcription antitermination protein NusB TERM 1647 1469186 - 1469215 + F 87 -12.3 -3.30124 | opp_overlap 1469192, overlap 1469192 GCACGCAATAGATAG TAGAAACGGCATC CTAG GATGCCGTTTTTG TTATACCCGATGGGG TERM 1648 1469192 - 1469209 + F 100 -11.3 -5.18726 | opp_overlap 1469192, overlap 1469186 AATAGATAGTAGAAA CGGCATC CTAG GATGCCG TTTTTGTTATACCCG TERM 1649 1469209 - 1469192 - f 90 -11.3 -4.05991 | opp_overlap 1469192 1469186 AATAGATAGTAGAAA CGGCATC CTAG GATGCCG TTTTTGTTATACCCG Shal_1210 1469348 - 1470319 + | thiamine-monophosphate kinase TERM 1650 1470401 - 1470454 + G 72 -2.9 -4.93296 | overlap 1470417 CCCTTGGGTTTGGCT CTGGGCTAGTGGCTAAGGCGCCAGG CACC TTTGGCACGCTGGCAGCTATCCCGG TTTTTCTGCTGATGG Shal_1211 1470319 - 1470813 + | phosphatidylglycerophosphatase A TERM 1651 1470848 - 1470867 + T 100 -12.2 -5.65496 | opp_overlap 1470848 TCGAGTCATAAAAAA TGCAGAGC GAAG GCTCTGCA TTTTTGTTTTTAGTC TERM 1652 1470867 - 1470848 - T 100 -12.2 -5.28176 | opp_overlap 1470848 TCGAGTCATAAAAAA TGCAGAGC GAAG GCTCTGCA TTTTTGTTTTTAGTC Shal_1212 1472558 - 1470897 - | recombination and repair protein TERM 1653 1472620 - 1472579 - R 100 -15.5 -4.25104 | opp_overlap 1472590 1472594 1472616, overlap 1472581 TGTCCTTTATCAAAA CACTGTATAGTTAAACAGT ATAT ACTGTTTATCTATACAGTA AACAACTGTTGTATG TERM 1654 1472618 - 1472581 - R 100 -15.9 -3.73042 | opp_overlap 1472590 1472594 1472616, overlap 1472579 TCCTTTATCAAAACA CTGTATAGTTAAACAGT ATAT ACTGTTTATCTATACAG TAAACAACTGTTGTA Shal_1213 1473344 - 1473192 - | TetR family transcriptional regulator Shal_1214 1473967 - 1473644 - | hypothetical protein TERM 1655 1474079 - 1474098 + H 77 -6.3 -4.58644 | opp_overlap 1474079 1474074 1474071, overlap 1474084 CATACAATAAGGATA GGCCGCG CGCAGC CGCGTCC TTTTCCTTATTCGTT TERM 1656 1474763 - 1474753 - H 73 -8.2 -3.84246 | GTTTCAAGGATGAAA CCGC AGA GCGG CCAAGGACGGCTTTA TERM 1657 1475240 - 1475256 + H 72 -9.5 -3.03741 | GCCACGACGTTAGTT GTTAGAC GCA GTCTAAC TCTATGCTTATGGAT TERM 1658 1475277 - 1475294 + H 75 -9.9 -3.32022 | GCTTATGGATTATCA GCGCTTA TCCG TAAGCGC TTACTCTGTGCGACC Shal_1215 1475698 - 1476600 + | LysR family transcriptional regulator Shal_1216 1477327 - 1476722 - | hypothetical protein Shal_1217 1480118 - 1477329 - | hybrid sensory histidine kinase BarA TERM 1659 1478837 - 1478859 + g 74 -11.4 -2.78679 | overlap 1478836 1478839 CGGTAAATTTAATCG CATTACCGAC CAA GTTGGTAATG ATTTGGCTAAAGCGC Shal_1218 1480217 - 1481554 + | 23S rRNA 5-methyluridine methyltransferase Shal_1219 1481771 - 1483978 + | (p)ppGpp synthetase I, SpoT/RelA TERM 1660 1484026 - 1484005 - f 75 -10.1 -3.2043 | opp_overlap 1484006, overlap 1484003 1484002 1484006 ATCACTAGAAAATTA GCGGCAACC CAAT GGTTGCCGT TTTTATATGGTTTAC TERM 1661 1484006 - 1484025 + F 100 -13.6 -5.06585 | opp_overlap 1484005 1484003 1484002 1484006 TCACTAGAAAATTAG CGGCAACC CAAT GGTTGCCG TTTTTATATGGTTTA TERM 1662 1484025 - 1484006 - f 91 -13.6 -2.51535 | opp_overlap 1484006, overlap 1484005 1484003 1484002 TCACTAGAAAATTAG CGGCAACC CAAT GGTTGCCG TTTTTATATGGTTTA TERM 1663 1484588 - 1484578 - g 70 -2.4 -4.93595 | ATAAAAATTCAAAAA CGTG TCG CTCG AGTGGGTTTTGACTG Shal_1220 1484116 - 1484919 + | nucleoside triphosphate pyrophosphohydrolase Shal_1221 1485035 - 1486675 + | CTP synthetase TERM 1664 1486714 - 1486682 - f 100 -12.1 -4.99568 | opp_overlap 1486687, overlap 1486687 GAAGACTAAATAAAA CGAAACCGCTTCCAT TGC ATGGAAGCGGTTTTT TTGTTTATGGCGATT TERM 1665 1486687 - 1486709 + F 100 -16.4 -6.02919 | opp_overlap 1486682 1486687 CTAAATAAAACGAAA CCGCTTCCAT TGC ATGGAAGCGG TTTTTTTGTTTATGG TERM 1666 1486709 - 1486687 - f 100 -16.4 -4.37871 | opp_overlap 1486687, overlap 1486682 CTAAATAAAACGAAA CCGCTTCCAT TGC ATGGAAGCGG TTTTTTTGTTTATGG TERM 1667 1487007 - 1487017 + F 88 -4 -5.71295 | GGTATCCGTTTGGAT GAAT AGA ATTC TTTTTATTTTTATCT Shal_1222 1487068 - 1488363 + | phosphopyruvate hydratase TERM 1668 1488384 - 1488401 + F 100 -12.7 -5.58179 | opp_overlap 1488384 TATAAACTTTAAAAA GGCCACC ACTC GGTGGCC TTTTTTGTTGTACTA TERM 1669 1488401 - 1488384 - f 100 -12.7 -4.72486 | opp_overlap 1488384 TATAAACTTTAAAAA GGCCACC ACTC GGTGGCC TTTTTTGTTGTACTA Shal_1223 1488454 - 1488750 + | septum formation initiator Shal_1224 1488829 - 1489521 + | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Shal_1225 1489561 - 1490040 + | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Shal_1226 1490131 - 1491195 + | tRNA pseudouridine synthase D TruD Shal_1227 1491195 - 1491947 + | stationary-phase survival protein SurE Shal_1228 1492049 - 1492684 + | protein-L-isoaspartate O-methyltransferase Shal_1229 1492749 - 1493642 + | peptidase M23B TERM 1670 1493879 - 1493853 - g 86 -3 -5.64274 | overlap 1493855 TGATCTACAAAAAAA CTTAGATGCAAC CCA ATTGTATCTAGG CGAAATTGGTTTTTC Shal_1230 1493719 - 1494684 + | RpoD family RNA polymerase sigma factor TERM 1671 1494732 - 1494710 - T 100 -14.2 -4.99056 | opp_overlap 1494710 TAAGATAATTAAAAA GCGCAGCTGA TTA TCAACTGCGC TTTTTTTGTGTCTAA TERM 1672 1494710 - 1494732 + T 100 -12 -5.76633 | opp_overlap 1494710 TAAGATAATTAAAAA GCGCAGCTGA TTA TCAACTGCGC TTTTTTTGTGTCTAA Shal_1231 1497383 - 1494804 - | DNA mismatch repair protein TERM 1673 1495075 - 1495063 - G 70 -9.1 -3.32963 | ACCTGTAGGCCATAA CTGCG ACT CGCAG CACCCTCTTGTACGG TERM 1674 1495267 - 1495288 + g 72 -8.1 -3.76224 | gap 1, opp_overlap 1495269 AGTGACAGACCATCA TAGGTCGATG TAC CA-CGACCTA TTTCATCCATCAACA Shal_1232 1497704 - 1498771 + | recombinase A TERM 1675 1498881 - 1498851 - f 93 -14 -3.14522 | opp_overlap 1498853, overlap 1498853 GCAATGGATAGTGAA TATCGCGGTGTGCT ATT AGCACGCCGCGATT TTGTTTTAATAGCTG TERM 1676 1498853 - 1498879 + F 100 -18.8 -5.13722 | opp_overlap 1498851 1498853 AATGGATAGTGAATA TCGCGGTGTGCT ATT AGCACGCCGCGA TTTTGTTTTAATAGC TERM 1677 1498879 - 1498853 - f 100 -16.6 -3.13071 | opp_overlap 1498853, overlap 1498851 AATGGATAGTGAATA TCGCGGTGTGCT ATT AGCACGCCGCGA TTTTGTTTTAATAGC TERM 1678 1499319 - 1499332 + G 85 -6.7 -5.10077 | opp_overlap 1499312 TATCAAACCACTGCA GCACT GCGA AGTGC TTTTTTGGAATATTT TERM 1679 1499968 - 1499954 - g 79 -10 -3.69256 | ATTCATGCAATACAA CCGTCA AGC TGACGG TGAGATGAAACCACT Shal_1233 1499301 - 1501925 + | alanyl-tRNA synthetase TERM 1680 1501966 - 1501952 - f 79 -8.5 -4.02132 | opp_overlap 1501952 CCTTAAATTTAGAAA CGCCC TTTAT GGGCG TTTTTTTATGGAATA TERM 1681 1501952 - 1501966 + F 100 -8.5 -5.626 | opp_overlap 1501952 CCTTAAATTTAGAAA CGCCC TTTAT GGGCG TTTTTTTATGGAATA Shal_1234 1502439 - 1502636 + | carbon storage regulator, CsrA TERM 1682 1502683 - 1502667 - f 80 -10.9 -3.4015 | opp_overlap 1502667, overlap 1502656 ATAAGAATTCTAGAA GCCAGTT AAT AACTGGC TTTTTTATTTCTGGG TERM 1683 1502667 - 1502683 + F 100 -10.9 -5.72622 | opp_overlap 1502667 1502656 ATAAGAATTCTAGAA GCCAGTT AAT AACTGGC TTTTTTATTTCTGGG TERM 1684 1502934 - 1502950 + F 80 -6.5 -4.80417 | opp_overlap 1502934 TTGAAACCAGTAGAA GCCAGTT AAT AACGGGC TTTATTATTTTTATG TERM 1685 1503851 - 1503902 + F 95 -12.9 -3.57239 | gap 3, opp_overlap 1503867, overlap 1503867 CCTCCTTCTCCGCCA TCATT-TGA--ACAAAAAACCGCAAC AGT GTTGCGGTTTTTTGTCCTCAGAATGA TTGTGATGTTTAAGT TERM 1686 1503867 - 1503883 + F 100 -12.3 -5.31275 | opp_overlap 1503867, overlap 1503851 CATTTGAACAAAAAA CCGCAAC AGT GTTGCGG TTTTTTGTCCTCAGA TERM 1687 1503883 - 1503867 - f 100 -12.3 -5.46657 | opp_overlap 1503851 1503867 CATTTGAACAAAAAA CCGCAAC AGT GTTGCGG TTTTTTGTCCTCAGA TERM 1688 1504257 - 1504223 - f 90 -13.1 -2.82516 | opp_overlap 1504218 1504225 1504233, overlap 1504233 TCCGCCATCATTACA TGCAAAAAAACCGCA CTCGT TGCGGTTTTTTTGTA TCTGCAATTTGCTTC TERM 1689 1504225 - 1504255 + F 100 -15.7 -2.93747 | opp_overlap 1504223 1504233, overlap 1504218 1504233 CGCCATCATTACATG CAAAAAAACCGCA CTCGT TGCGGTTTTTTTG TATCTGCAATTTGCT TERM 1690 1504233 - 1504247 + F 100 -7.1 -5.76633 | opp_overlap 1504233 1504223, overlap 1504225 1504218 TTACATGCAAAAAAA CCGCA CTCGT TGCGG TTTTTTTGTATCTGC TERM 1691 1504247 - 1504233 - f 93 -7.1 -5.50499 | opp_overlap 1504225 1504218 1504233, overlap 1504223 TTACATGCAAAAAAA CCGCA CTCGT TGCGG TTTTTTTGTATCTGC Shal_1235 1504819 - 1505070 + | sodium pump decarboxylase, gamma subunit Shal_1236 1505086 - 1506897 + | pyruvate carboxylase subunit B TERM 1692 1507546 - 1507530 - g 74 -7.3 -4.26871 | opp_overlap 1507530 GAAGTTAGTAAGAAA GAGAAGA TTA TCTTCCC TTTGATGGTGCTTGG Shal_1237 1506906 - 1508036 + | sodium ion-translocating decarboxylase, beta subunit TERM 1693 1508076 - 1508057 - T 83 -6.4 -5.06816 | opp_overlap 1508058, overlap 1508058 AGTGTTTAATAAAAA GTCCTGCT CTAT AGCAGGAT TTTTTTATTTTCAGC TERM 1694 1508075 - 1508058 - T 79 -9.9 -3.63367 | opp_overlap 1508058, overlap 1508057 GTGTTTAATAAAAAG TCCTGCT CTAT AGCAGGA TTTTTTTATTTTCAG TERM 1695 1508058 - 1508075 + T 100 -9.9 -6.09196 | opp_overlap 1508058 1508057 GTGTTTAATAAAAAG TCCTGCT CTAT AGCAGGA TTTTTTTATTTTCAG TERM 1696 1508409 - 1508423 + T 75 -10 -3.06265 | opp_overlap 1508409 1508408, overlap 1508404 AGCAGGATAGGAAAG CTCCCT TCT AGGGAG TCTGCTTTGTAACAT TERM 1697 1508423 - 1508409 - T 73 -10 -2.91668 | opp_overlap 1508404 1508409, overlap 1508408 AGCAGGATAGGAAAG CTCCCT TCT AGGGAG TCTGCTTTGTAACAT TERM 1698 1508448 - 1508469 + T 71 -6.5 -4.1523 | opp_overlap 1508448 1508449, overlap 1508441 1508449 TAACATATGGGCAAA GCCACCTTC TTCA GGAGGTGGA TTCTTTATACTTAAA TERM 1699 1508449 - 1508468 + T 75 -10 -3.08415 | opp_overlap 1508448 1508449, overlap 1508441 1508448 AACATATGGGCAAAG CCACCTTC TTCA GGAGGTGG ATTCTTTATACTTAA Shal_1238 1508734 - 1508549 - | hypothetical protein TERM 1700 1508816 - 1508787 - R 100 -13.7 -4.21402 | opp_overlap 1508788 1508794, overlap 1508788 1508794 ATTGAAAAGTATAAA TTAAAAAGGCCGC GATT GCGGCCTTTTTAT TCGATGAAAAACGCT TERM 1701 1508815 - 1508788 - R 100 -17.2 -3.11757 | opp_overlap 1508788 1508794, overlap 1508787 1508794 TTGAAAAGTATAAAT TAAAAAGGCCGC GATT GCGGCCTTTTTA TTCGATGAAAAACGC TERM 1702 1508788 - 1508815 + r 100 -17.2 -3.05384 | opp_overlap 1508788 1508787 1508794, overlap 1508794 TTGAAAAGTATAAAT TAAAAAGGCCGC GATT GCGGCCTTTTTA TTCGATGAAAAACGC TERM 1703 1508794 - 1508809 + r 100 -11.8 -5.10461 | opp_overlap 1508794 1508788 1508787, overlap 1508788 AGTATAAATTAAAAA GGCCGC GATT GCGGCC TTTTTATTCGATGAA TERM 1704 1508809 - 1508794 - R 100 -11.8 -5.05505 | opp_overlap 1508788 1508794, overlap 1508788 1508787 AGTATAAATTAAAAA GGCCGC GATT GCGGCC TTTTTATTCGATGAA Shal_1239 1510084 - 1508834 - | sodium:dicarboxylate symporter Shal_1240 1510562 - 1513399 + | peptidase M16 domain-containing protein TERM 1705 1513460 - 1513421 - f 83 -12.3 -2.89881 | opp_overlap 1513422 1513425 GAGTTAGTCCATATA TCCATGAGATGATGCCA AATCTA TGGCATCATCTCATCGT TTATTATGGTGGCAG TERM 1706 1513422 - 1513459 + F 100 -15.8 -4.35483 | opp_overlap 1513421, overlap 1513425 AGTTAGTCCATATAT CCATGAGATGATGCCA AATCTA TGGCATCATCTCATCG TTTATTATGGTGGCA TERM 1707 1513425 - 1513456 + F 100 -16.1 -3.16079 | opp_overlap 1513421, overlap 1513422 TAGTCCATATATCCA TGAGATGATGCCA AATCTA TGGCATCATCTCA TCGTTTATTATGGTG TERM 1708 1514041 - 1514067 + G 77 -10.3 -3.34233 | opp_overlap 1514057 GTGCATTTTAATTTC TCTGTTTCAGA CCAAC TCTGGAACAGA TTGTACGAATTATCG Shal_1241 1513579 - 1515147 + | glutamate--cysteine ligase TERM 1709 1515229 - 1515207 - g 85 -14.2 -3.01712 | TTGGCGTTGCTAATA TCGGGCTGTG CGA CACAACCCGA TACCGCTAATCAGTG Shal_1242 1515177 - 1515590 + | hypothetical protein Shal_1243 1515715 - 1516332 + | hypothetical protein TERM 1710 1516353 - 1516372 + T 100 -12.2 -5.28826 | opp_overlap 1516353 GACTAATCTGACTAA GCCTCTAC ATCT GTAGAGGC TTTTTTCTCAAATTT TERM 1711 1516372 - 1516353 - T 83 -12.2 -3.19157 | opp_overlap 1516353 GACTAATCTGACTAA GCCTCTAC ATCT GTAGAGGC TTTTTTCTCAAATTT Shal_1244 1517679 - 1516435 - | diguanylate cyclase with GAF sensor TERM 1712 1517067 - 1517079 + g 84 -7.7 -4.75219 | overlap 1517064 CGATATGGATAGGGC TCGAC AGG GTCGA TTTTATTGGTGCTTC TERM 1713 1517844 - 1517834 - H 84 -6.8 -4.96848 | opp_overlap 1517832 1517834 TCTTTCACAGAAAAA GCCA CCT TGGC TATTTGTTTTGCCAG Shal_1245 1518032 - 1518535 + | phosphoribosylaminoimidazole carboxylase, catalytic subunit TERM 1714 1518554 - 1518541 - f 73 -8.1 -3.92178 | overlap 1518543 ACTAGCTTAATTAAA CAGGC ATTT GCCTG TCGACATCAAATGCC TERM 1715 1518566 - 1518593 + F 100 -11.4 -5.35815 | opp_overlap 1518543 1518566 CCTGTCGACATCAAA TGCCGCCTAGAA AATT TTTTAGGTGGCA TTTTTGTTTGATCTG Shal_1246 1518787 - 1519404 + | ECF subfamily RNA polymerase sigma-24 factor Shal_1247 1519394 - 1519960 + | hypothetical protein TERM 1716 1520018 - 1519999 - T 72 -9.2 -3.3318 | opp_overlap 1520001 1520015, overlap 1519997 1520001 GAAGACACCAGAACA TAGCCCGC TTTT GCGGGCTT TTTTAGAGCTTTTTT TERM 1717 1520016 - 1520001 - T 83 -11.8 -3.22182 | opp_overlap 1520001 1520015, overlap 1519999 1519997 AGACACCAGAACATA GCCCGC TTTT GCGGGC TTTTTTAGAGCTTTT TERM 1718 1520001 - 1520016 + T 100 -11.8 -5.08011 | opp_overlap 1519999 1519997 1520001, overlap 1520015 AGACACCAGAACATA GCCCGC TTTT GCGGGC TTTTTTAGAGCTTTT TERM 1719 1520015 - 1520027 + T 74 -4.1 -5.03314 | opp_overlap 1520001 1519999 1519997, overlap 1520001 AGCCCGCTTTTGCGG GCTTT TTT AGAGC TTTTTTGGGGATGGC Shal_1248 1520476 - 1520060 - | hypothetical protein TERM 1720 1520308 - 1520292 - G 78 -6.5 -4.67982 | overlap 1520279 CGCCAGCCAACAAAA GGCAGGT AGA AGCTGCC GCGACTATCGACCAT TERM 1721 1520801 - 1520791 - H 78 -4 -5.29445 | GTTTAAGAATAAAAA CAAT AGG ATTG GTAGCTCAGATGAAA TERM 1722 1521444 - 1521432 - g 70 -9.1 -3.40867 | TTAGGCAGCAAGCAA GAGGC GAT GCCTC TGACTCAGTCTCATC TERM 1723 1522157 - 1522183 + G 71 -3.8 -4.84642 | gap 1, overlap 1522155 1522160 ACTTGGGCCCTACGG CGA-TATCGTC TGGTCT GGCGATAGTCG TTTTATTGCTTTAAC Shal_1249 1520811 - 1524089 + | peptidase S41 TERM 1724 1524143 - 1524175 + F 100 -14.4 -4.84914 | overlap 1524135 GCAACTCCGTCGTTT TGGACGTTATTAGC AATAA GTTAATAACGTCCA TTTTCTTATCTACGT TERM 1725 1524788 - 1524771 - g 91 -6.3 -5.58074 | gap 1, overlap 1524783 1524784 CAATCACTAAAAAAA GCCGGACA AAA TGT-CGGC GCCCAGACCGCCAAT Shal_1250 1524417 - 1525559 + | secretion protein HlyD family protein Shal_1251 1525549 - 1526616 + | hypothetical protein TERM 1726 1526628 - 1526638 + F 74 -4.6 -4.92314 | ATAAAGCAAAGCCGT GGGG TAA CCTC TTTTTATAGGTTAAT Shal_1252 1526959 - 1527543 + | putative lipoprotein TERM 1727 1527568 - 1527585 + T 100 -9.9 -5.64274 | opp_overlap 1527568 TATCTGAACAAAAAA GCTAGGT TGTT ACCTAGC TTTTTTTATGCCTGA TERM 1728 1527585 - 1527568 - T 100 -9.9 -5.46657 | opp_overlap 1527568 TATCTGAACAAAAAA GCTAGGT TGTT ACCTAGC TTTTTTTATGCCTGA Shal_1253 1528073 - 1527627 - | OsmC family protein Shal_1254 1528928 - 1528422 - | hypothetical protein TERM 1729 1529058 - 1529081 + r 100 -12.6 -4.43844 | opp_overlap 1529030 1529058 TACAAATAATAAAAA GCCTTTTACT GAAC AGTAAAAGGC TTTTATACATCATGC TERM 1730 1529081 - 1529058 - R 100 -12.6 -5.42164 | opp_overlap 1529058, overlap 1529030 TACAAATAATAAAAA GCCTTTTACT GAAC AGTAAAAGGC TTTTATACATCATGC Shal_1255 1529429 - 1529118 - | hypothetical protein Shal_1256 1531090 - 1529447 - | PepSY-associated TM helix domain-containing protein TERM 1731 1529866 - 1529853 - G 100 -8.1 -5.36441 | TTGGCATAGAAAAAA CTGGC TGTA GCCAG TGGAAGGCCTGTGAT TERM 1732 1530062 - 1530081 + g 73 -10 -3.3382 | opp_overlap 1530062 TAGAGGCTCGGCAAA TCGTCCTG TATG CAGGGCGA TTAATGTATCGTGAG Shal_1257 1531393 - 1531094 - | hypothetical protein Shal_1258 1531992 - 1532348 + | sigma 54 modulation protein/ribosomal protein S30EA TERM 1733 1532391 - 1532418 + T 100 -10.6 -5.81412 | opp_overlap 1532391 GACAATAGAGATAAA GCTCTCATTACC AAGC GGTAACGAGGGC TTTTTTTTAACTACC TERM 1734 1532418 - 1532391 - T 90 -10.6 -4.22949 | opp_overlap 1532391 GACAATAGAGATAAA GCTCTCATTACC AAGC GGTAACGAGGGC TTTTTTTTAACTACC Shal_1259 1534460 - 1532532 - | potassium efflux system protein TERM 1735 1532893 - 1532866 - G 70 -4.8 -4.4767 | gap 1, overlap 1532867 1532869 1532870 TCACTCACCATAAAA TC-AGCTCCTGCG TTA CGCAGGCGATAGA GGTGCCTTCGGTCAA TERM 1736 1532888 - 1532870 - G 70 -10.2 -2.51535 | overlap 1532869 1532867 1532866 TCACCATAAAATCAG CTCCTGCG TTA CGCAGGCG ATAGAGGTGCCTTCG TERM 1737 1533229 - 1533240 + g 88 -5.8 -5.52384 | ATATCATCGGGCTCG CGAG TATT CTCG TTTTTTTCATAGCGA Shal_1260 1535080 - 1534460 - | NAD(P)H dehydrogenase (quinone) TERM 1738 1534898 - 1534885 - G 100 -8.1 -5.19879 | opp_overlap 1534885 GTGGAAACATAAAAA CCACG ATAT CGTGG TCTCTGAGTCTTTGT Shal_1261 1535466 - 1536677 + | NnrS family protein TERM 1739 1537743 - 1537719 - g 73 -2.1 -5.17054 | overlap 1537722 ATAAGAGTGAAAAAA CCATCATCAAG TCT CTTGAAAACAG TAAGGCGGCAATTGA Shal_1262 1536764 - 1538173 + | nitrite reductase (cytochrome; ammonia-forming) TERM 1740 1538215 - 1538238 + F 100 -15.4 -5.67063 | opp_overlap 1538215 GTGACTCGCTTTAAA GGCTCAAAGG TTCT CCTTTGAGCC TTTTTTTATCATCCC TERM 1741 1538238 - 1538215 - f 100 -15.4 -3.53811 | opp_overlap 1538215 GTGACTCGCTTTAAA GGCTCAAAGG TTCT CCTTTGAGCC TTTTTTTATCATCCC Shal_1263 1538356 - 1538844 + | hypothetical protein Shal_1264 1538890 - 1539951 + | AraC family transcriptional regulator TERM 1742 1540187 - 1540209 + G 79 -10.6 -3.55563 | GATTAACGACGCTTT TACTGGTTGG CTG CCAACCAGAA TTTAAGGCGTCAGCT Shal_1265 1540123 - 1542135 + | beta-lactamase domain-containing protein TERM 1743 1542207 - 1542217 + T 70 -8.2 -3.76224 | TAAAGCCATCCATGG CCGC TCT GCGG TTTCATCCCTGAAAC TERM 1744 1542434 - 1542407 - T 82 -10.6 -3.53012 | overlap 1542411 TCCTGCCCCGCGAAA GCTATGCCCACA TCCG TGTGGGCATTAC GACTATTTCTTCAAC TERM 1745 1542430 - 1542411 - T 81 -12.2 -2.64155 | overlap 1542407 GCCCCGCGAAAGCTA TGCCCACA TCCG TGTGGGCA TTACGACTATTTCTT TERM 1746 1543140 - 1543155 + T 72 -4.6 -4.72986 | opp_overlap 1543141, overlap 1543141 TTCGAAGCTAAAAAA ACCACC TTGC GGTGGC TTTTTAGTGACAGTC TERM 1747 1543154 - 1543141 - T 100 -8.1 -5.53288 | opp_overlap 1543141 1543140 TCGAAGCTAAAAAAA CCACC TTGC GGTGG CTTTTTAGTGACAGT Shal_1266 1545457 - 1543220 - | acyl-CoA dehydrogenase TERM 1748 1545765 - 1545784 + r 100 -13.6 -4.42594 | opp_overlap 1545765 ACGGCAAAAATAAAA CAAGGGCG ATAT CGCCCTTG TTTATGTTTGGTTTA TERM 1749 1545784 - 1545765 - R 100 -13.6 -5.27023 | opp_overlap 1545765 ACGGCAAAAATAAAA CAAGGGCG ATAT CGCCCTTG TTTATGTTTGGTTTA Shal_1267 1547029 - 1545842 - | ribosome-associated GTPase TERM 1750 1546892 - 1546877 - G 71 -6.8 -4.07789 | TAAGCTATAAAAAGA GCCACT GTCT AGCGGC GTAGGCACGCTTGGA TERM 1751 1546900 - 1546910 + g 77 -6.8 -4.40804 | CTAGCGGCGTAGGCA CGCT TGG AGCG TTTTCTACACTGGTA TERM 1752 1547519 - 1547495 - R 90 -11.6 -3.92178 | opp_overlap 1547483 1547498, overlap 1547498 AGTATTTTAATGAAA TAACCACACT ATGAA AGTGTGGTTA TATAGCTAAAAATTT TERM 1753 1547498 - 1547516 + r 74 -8.9 -3.51924 | opp_overlap 1547495 1547498, overlap 1547483 ATTTTAATGAAATAA CCACACT ATGAA AGTGTGG TTATATAGCTAAAAA TERM 1754 1547516 - 1547498 - R 83 -8.9 -4.08651 | opp_overlap 1547498 1547483, overlap 1547495 ATTTTAATGAAATAA CCACACT ATGAA AGTGTGG TTATATAGCTAAAAA Shal_1268 1548196 - 1547555 - | hypothetical protein Shal_1269 1548367 - 1548705 + | hypothetical protein Shal_1270 1548730 - 1550031 + | beta-lactamase TERM 1755 1550168 - 1550186 + F 85 -6.7 -5.1287 | TGCTGAGATGCGCAA GCTGCTA TTAAT TAGCGGC TTTTTTGGATCTGAA TERM 1756 1551186 - 1551167 - g 76 -4.4 -5.02502 | TACACCACAGAAAAA TATAAAGC GCAT ACTTTATA TGTCGGTTATCAGTT Shal_1271 1550864 - 1551562 + | hypothetical protein TERM 1757 1551589 - 1551606 + F 91 -10.5 -4.4959 | AATATGACATTGTAA GGGCGCC TAAG GGCGCTC TTTTGCTTAATTGGA Shal_1272 1551630 - 1551890 + | hypothetical protein TERM 1758 1551952 - 1551925 - T 95 -8.5 -5.44119 | opp_overlap 1551949 1551950 CTGATGCTAAAAAAA CTGCGATGG TCCAGAGATC CCATCGCAG CAAAAGCTGATTTAA Shal_1273 1552545 - 1552027 - | putative lipoprotein Shal_1274 1554716 - 1552557 - | hypothetical protein TERM 1759 1554827 - 1554841 + H 74 -5 -4.70383 | GTTGGTTATATTCCC TCTTTG ACT CGAAGA TATTTTTTTTTGCAT TERM 1760 1555167 - 1555181 + H 81 -7.2 -4.53602 | GACTTGGAGCAAGTG CTTAAC AGT GTTAAG TTTCTTTGCTGTAAC Shal_1275 1555237 - 1556412 + | glycosyl transferase group 1 TERM 1761 1557000 - 1557011 + G 74 -5.8 -4.62069 | GTATCGTTAAGTTGA TGCC TATA GGCA TTTTTGCCATGACGG Shal_1276 1556402 - 1558612 + | extracellular solute-binding protein Shal_1277 1558661 - 1559482 + | hypothetical protein Shal_1278 1560509 - 1559511 - | hypothetical protein Shal_1279 1560959 - 1561687 + | hypothetical protein Shal_1280 1561691 - 1563208 + | diguanylate phosphodiesterase TERM 1762 1563231 - 1563256 + T 75 -2.5 -5.20735 | opp_overlap 1563233, overlap 1563232 1563233 CCCCTCTATACAAAA AACCTTAGTAC AATC GTGCTAAGGCA TTTGTTTTTTATTCC TERM 1763 1563233 - 1563254 + T 71 -9.5 -2.7956 | opp_overlap 1563233, overlap 1563232 1563231 CCTCTATACAAAAAA CCTTAGTAC AATC GTGCTAAGG CATTTGTTTTTTATT TERM 1764 1563254 - 1563233 - T 93 -7.3 -5.36441 | opp_overlap 1563232 1563231 1563233 CCTCTATACAAAAAA CCTTAGTAC AATC GTGCTAAGG CATTTGTTTTTTATT Shal_1281 1563888 - 1563328 - | CBS domain-containing protein Shal_1282 1564193 - 1564915 + | nitroreductase A Shal_1283 1565117 - 1565644 + | PEBP family protein TERM 1765 1566206 - 1566181 - g 72 -6.1 -4.31085 | TACACTAAGGGAAAA GGTGAGCCG TTACTTGT CGGCTGACC CATCCGCCAGCCATA Shal_1284 1565690 - 1566499 + | AraC family transcriptional regulator TERM 1766 1566842 - 1566859 + F 100 -11.3 -5.4505 | TCACTCATCTCTGAG GCTCGCT TTTT AGCGAGC TTTTTTATTGCCCCA Shal_1285 1567303 - 1567644 + | alkylphosphonate utilization operon protein PhnA TERM 1767 1567665 - 1567645 - T 73 -8.3 -3.62613 | AGAAAACAGAACTAA TCGAACTGC CAA GCAGTTAGA AGCGTTTTGATGTAA TERM 1768 1567707 - 1567683 - T 76 -7.2 -4.18018 | opp_overlap 1567688, overlap 1567688 CGTTTTGATGTAAAA GAAAACCTGC CTAGT GCAGGTTTTT TTGTGGCTGCTTAGC TERM 1769 1567688 - 1567702 + T 100 -7.1 -5.64274 | opp_overlap 1567688 1567683 TGATGTAAAAGAAAA CCTGC CTAGT GCAGG TTTTTTTGTGGCTGC TERM 1770 1567702 - 1567688 - T 86 -7.1 -5.10933 | opp_overlap 1567688, overlap 1567683 TGATGTAAAAGAAAA CCTGC CTAGT GCAGG TTTTTTTGTGGCTGC Shal_1286 1568530 - 1567718 - | AraC family transcriptional regulator Shal_1287 1568632 - 1569165 + | alkylhydroperoxidase Shal_1288 1569184 - 1569621 + | hypothetical protein TERM 1771 1569666 - 1569649 - f 79 -11.3 -2.58861 | opp_overlap 1569649, overlap 1569648 GATTATTTGTAGAAG CGCTCAC ATTA GTGAGCG TTTTCTTACATGAGA TERM 1772 1569649 - 1569666 + F 95 -11.3 -4.67982 | opp_overlap 1569649 1569648 GATTATTTGTAGAAG CGCTCAC ATTA GTGAGCG TTTTCTTACATGAGA TERM 1773 1569723 - 1569701 - f 72 -10 -2.72344 | opp_overlap 1569705, overlap 1569703 1569706 GTTGACTGTTAATTA TAGAAGTGAT GAT ATCACCTCTA ATCAGGTGGCCAAAT Shal_1289 1570182 - 1570508 + | integrase, catalytic region TERM 1774 1570673 - 1570693 + T 72 -3.3 -5.1244 | opp_overlap 1570676, overlap 1570674 AACCCACCACCCAGA CTATCTTGG GTC TCAAGATAC TTTTTATGTTGGTAA TERM 1775 1570722 - 1570743 + T 73 -9.5 -3.19091 | opp_overlap 1570719 AACCTAAAAGGAGTG GGTCTGTTG TTAC CAATAGACC TTCGTAGATAGCTAT Shal_1291 1572246 - 1571347 - | LysR family transcriptional regulator TERM 1776 1572529 - 1572514 - H 82 -6.2 -4.87389 | TATTCCAAAAATAAA TACTAC TAAA GTAGTA AGTGCTGCGAGACTG Shal_1292 1573256 - 1573825 + | hypothetical protein TERM 1777 1574871 - 1574884 + G 78 -5.3 -5.06816 | TAATGAAAATTGATT CAATG GATG CATTG TTTTTATTGAAAAAT Shal_1293 1573997 - 1575580 + | diguanylate cyclase/phosphodiesterase TERM 1778 1575831 - 1575853 + G 72 -6.4 -4.20211 | opp_overlap 1575845, overlap 1575845 AAAAGGGTTGTTCAG CATTTATCAT ATT ATGATAAAAG TTTATCATTTATGTT Shal_1294 1575702 - 1576013 + | peroxiredoxin-like protein TERM 1779 1577307 - 1577289 - g 72 -8.9 -3.53811 | TTTACTTGCTTTAAA TGCAGCT ATTGA AGCTGCA AGGGCGGGAGAAGCA Shal_1295 1576102 - 1577742 + | methyl-accepting chemotaxis sensory transducer TERM 1780 1580346 - 1580366 + G 74 -8.3 -3.84719 | opp_overlap 1580342 TGTTATCAAGACAGC GCCGATGCA GCC TGTATTGGC TTTACCTTTGACGAT TERM 1781 1580381 - 1580397 + G 72 -5.1 -4.63184 | opp_overlap 1580383, overlap 1580383 CTTTACCTTTGACGA TATCGCT AAA GGCGATG TTTTTGCGCTGCGTT Shal_1296 1577886 - 1580855 + | MSHA biogenesis protein MshQ Shal_1297 1581065 - 1580874 - | hypothetical protein Shal_1298 1582357 - 1581167 - | hypothetical protein TERM 1782 1582981 - 1582969 - R 71 -6.3 -4.29304 | opp_overlap 1582969 1582968 TGATTACAACATAAA CAGTA TGT TACTG GTTAGTGTCTGTAAG TERM 1783 1583255 - 1583289 + r 88 -11.5 -3.64049 | opp_overlap 1583256, overlap 1583256 CTGCAGATACAAAAA AGCCGCTAAATCCGT CTGGT AGGGATTTAGCGGCC TTTGAAGGTTATTGC TERM 1784 1583256 - 1583288 + r 95 -15 -2.77947 | opp_overlap 1583256, overlap 1583255 TGCAGATACAAAAAA GCCGCTAAATCCGT CTGGT AGGGATTTAGCGGC CTTTGAAGGTTATTG TERM 1785 1583288 - 1583256 - R 100 -15 -5.4251 | opp_overlap 1583255 1583256 TGCAGATACAAAAAA GCCGCTAAATCCGT CTGGT AGGGATTTAGCGGC CTTTGAAGGTTATTG TERM 1786 1583529 - 1583559 + r 78 -10.6 -2.94925 | opp_overlap 1583539, overlap 1583539 GCGGATATTTTGTAT GTTTGTACAAGGTA GAC TACCTTGTAAGAAC TGTATAATAAGCTGT TERM 1787 1584002 - 1584020 + r 90 -7.5 -5.2189 | TCATCTCATTCTTAC CCAATAG AGCTG CTATTGG TTTTTTGGTGATTGC Shal_1299 1584164 - 1583979 - | phage integrase family protein TERM 1788 1584412 - 1584438 + H 93 -14 -2.98823 | opp_overlap 1584417 1584420, overlap 1584417 1584420 CATAGTAGCCTTCTA TCTAATAAGGTA GAC TACCTTATTAGA TCTGTATAAAAACAG TERM 1789 1584993 - 1584969 - g 71 -7.3 -4.1348 | overlap 1584966 AAAAAATAAACAGAA TGCATTTGA TGAGGTT TCAAATGCA AACAAGCAAAGGTAT Shal_1300 1584532 - 1585779 + | ATP-dependent OLD family endonuclease TERM 1790 1586321 - 1586298 - g 83 -9.8 -4.12397 | opp_overlap 1586291 1586290 GGAGAGAAGCAGAAA CAAAAAAAGA ATAT TCTTTTTTTG TTAAAGCATTAATCA Shal_1301 1585772 - 1586353 + | hypothetical protein TERM 1791 1586474 - 1586494 + T 100 -14.1 -4.77036 | opp_overlap 1586479 GTCATCTCACTTTTA CCCAATAGC GTT GCTATTGGG TTTTTGGTGATGGCG Shal_1302 1586625 - 1586452 - | phage integrase family protein TERM 1792 1587022 - 1587047 + r 75 -5.5 -4.67234 | opp_overlap 1587022 1587023 CGTACGCGTAATAAA TTAGTCTCTAA TGCC TTGGAGTCTAA TTTTTCGCATTCAAT Shal_1303 1587716 - 1587216 - | hypothetical protein TERM 1793 1587716 - 1587734 + r 73 -5.4 -4.53036 | overlap 1587717 CCCCTATTATTATCA TTGTTATT AAT AATAACAG TTTTCCTATTTCTAA Shal_1304 1588795 - 1587770 - | integrase family protein Shal_1305 1589986 - 1588796 - | hypothetical protein Shal_1306 1590695 - 1590006 - | CI repressor Shal_1307 1590780 - 1590986 + | hypothetical protein Shal_1308 1591055 - 1591597 + | regulatory CII family protein Shal_1309 1591610 - 1592056 + | hypothetical protein TERM 1794 1592096 - 1592071 - f 100 -10.4 -5.65177 | ACAGGCACAAAAAAA GCCACTTCCG TTACAG CGGATGTGGC CGTGTCGACTCAATC Shal_1310 1592136 - 1592375 + | hypothetical protein Shal_1311 1592377 - 1592682 + | hypothetical protein Shal_1312 1592876 - 1593112 + | hypothetical protein Shal_1313 1593109 - 1593363 + | hypothetical protein TERM 1795 1593387 - 1593411 + G 95 -7.9 -5.31456 | gap 1, opp_overlap 1593389, overlap 1593391 CCTACATTATCACCA CAGTCCGAGG CATTGC CCTCGG-CTG TTTTTTGTGGATTAG Shal_1314 1593363 - 1595663 + | replication gene A Shal_1315 1595898 - 1596284 + | hypothetical protein Shal_1316 1596799 - 1596548 - | transcriptional activator Ogr/delta TERM 1796 1596719 - 1596750 + g 87 -10.3 -4.12188 | gap 1, opp_overlap 1596717 1596714 1596719 1596723, overlap 1596723 AGAACAAGAACAATA CAAATCGGCATGGG CCAAA CTCA-GCCGATTTG TTTTACCGATAATGG TERM 1797 1596750 - 1596719 - G 72 -8.8 -3.64549 | gap 1, opp_overlap 1596719 1596723, overlap 1596717 1596714 1596723 AGAACAAGAACAATA CAAATCGGCATGGGC CAA ACTCA-GCCGATTTG TTTTACCGATAATGG TERM 1798 1596723 - 1596746 + g 72 -5.3 -4.65933 | gap 1, opp_overlap 1596719 1596717 1596714 1596723, overlap 1596719 CAAGAACAATACAAA TCGGCATGGG CCAAA CTCA-GCCGA TTTGTTTTACCGATA Shal_1317 1596994 - 1597353 + | SH3 domain-containing protein Shal_1318 1597498 - 1598016 + | hypothetical protein Shal_1319 1599168 - 1598152 - | PBSX family phage portal protein Shal_1320 1601003 - 1599150 - | hypothetical protein TERM 1799 1599245 - 1599234 - G 70 -2.2 -5.0538 | opp_overlap 1599238, overlap 1599236 1599238 1599239 GGCGATGGCAAAAAA CACA TCGG CGTG GCCGGTTACGTTATC TERM 1800 1601041 - 1601064 + H 82 -11.2 -3.14132 | opp_overlap 1601030 TAATGTTCGGCCTGT TTCGGATATA GCCC TATATCCGAA TTCCTCCGAACCAAA Shal_1321 1601163 - 1602059 + | capsid scaffolding Shal_1322 1602109 - 1603149 + | P2 family phage major capsid protein TERM 1801 1603185 - 1603155 - f 91 -12 -3.90291 | overlap 1603159 AGTGGCTTAAGTAAA CCAATTAGGCACTC AAC GAGTGCCTAATCAA CCCCTTATTAACTCA TERM 1802 1603181 - 1603159 - f 100 -15 -3.61468 | overlap 1603155 GCTTAAGTAAACCAA TTAGGCACTC AAC GAGTGCCTAA TCAACCCCTTATTAA Shal_1323 1603230 - 1603790 + | hypothetical protein Shal_1324 1603829 - 1604503 + | small terminase subunit Shal_1325 1604625 - 1605074 + | hypothetical protein Shal_1326 1605071 - 1605571 + | hypothetical protein Shal_1327 1605568 - 1606221 + | hypothetical protein Shal_1328 1606235 - 1607353 + | hypothetical protein Shal_1329 1607378 - 1607827 + | prophage PSPPH06, putative tail tube protein Shal_1330 1607841 - 1608047 + | TraR/DksA family transcriptional regulator Shal_1331 1608044 - 1608592 + | hypothetical protein Shal_1332 1608602 - 1608991 + | hypothetical protein Shal_1333 1608988 - 1609254 + | hypothetical protein Shal_1334 1609251 - 1609514 + | hypothetical protein TERM 1803 1609550 - 1609516 - f 83 -4.8 -5.20328 | opp_overlap 1609549, overlap 1609517 1609518 CCGTAAAAAAATAAA TGCGCTGGTTGACGCC ATA GGCAACAACCAGCTTG AGCAATTGCTCATTG TERM 1804 1609549 - 1609517 - f 73 -8.3 -3.7057 | overlap 1609516 1609518 CGTAAAAAAATAAAT GCGCTGGTTGACGCC ATA GGCAACAACCAGCTT GAGCAATTGCTCATT TERM 1805 1609548 - 1609518 - f 81 -11.8 -2.80715 | overlap 1609517 1609516 GTAAAAAAATAAATG CGCTGGTTGACGCC ATA GGCAACAACCAGCT TGAGCAATTGCTCAT TERM 1806 1610187 - 1610199 + G 71 -7.7 -3.93262 | opp_overlap 1610187 CACCATTACCAATTA CATGG GCA CCATG TTTGGTATCTTCAAA Shal_1335 1609747 - 1611501 + | TP901 family phage tail tape measure protein Shal_1336 1611498 - 1611851 + | hypothetical protein Shal_1337 1611844 - 1613040 + | putative bacteriophage protein Shal_1338 1613041 - 1613703 + | hypothetical protein TERM 1807 1614257 - 1614293 + F 70 -9.7 -2.65591 | opp_overlap 1614268, overlap 1614256 1614255 GCTTTAAAGTGGTAC CACGTGCAACA-GCTAA CAGCT TTAGCGTGTTGC-CGTG TGGGTTATGTGTCTG TERM 1808 1616921 - 1616903 - g 79 -8.8 -4.0498 | overlap 1616919 GAGAAAAAGGAACAA CGCTTGCC ACA GGCAACCG CCAACCAACAAGGCG Shal_1340 1616519 - 1617016 + | hypothetical protein TERM 1809 1617488 - 1617470 - g 72 -8.2 -3.72576 | overlap 1617472 GCCGCGCCTATCAAA TACCAGAT TTT ATCTGGCA CCAGCAGGGCAATGG Shal_1341 1617016 - 1617705 + | hypothetical protein TERM 1810 1617986 - 1617964 - g 79 -8.4 -4.20516 | GGTGCAGGCAATAAA GCAGGCAG ACTAGAA CCGCCTGC GATTGGCTCAATAGT Shal_1342 1617718 - 1618392 + | hypothetical protein Shal_1343 1618416 - 1618613 + | hypothetical protein TERM 1811 1618906 - 1618884 - g 72 -9.2 -3.58343 | overlap 1618886 GTTACTATTCTTAAA GACTTTACTG ATG CAGTAAAGGC ATCGCAAAAATTAAA TERM 1812 1618904 - 1618886 - g 77 -10.4 -3.36991 | overlap 1618884 TACTATTCTTAAAGA CTTTACTG ATG CAGTAAAG GCATCGCAAAAATTA Shal_1344 1618761 - 1619126 + | hypothetical protein TERM 1813 1619149 - 1619167 + T 93 -9.6 -4.7497 | opp_overlap 1619149 CTTCACCACACATCA GCCTCATT TTA AGTGAGGC TTTTTGATACCTGCA TERM 1814 1619818 - 1619839 + T 90 -11.6 -4.11033 | opp_overlap 1619818 ACAGGCAGAAAAAAA GGCCAACC GGTTAA GGTTGGCC TTTCTAGTATTTGGT TERM 1815 1619839 - 1619818 - T 100 -11.6 -5.65177 | opp_overlap 1619818 ACAGGCAGAAAAAAA GGCCAACC GGTTAA GGTTGGCC TTTCTAGTATTTGGT Shal_1345 1620810 - 1620316 - | SsrA-binding protein Shal_1346 1621003 - 1621434 + | cyclase/dehydrase Shal_1347 1621431 - 1621763 + | hypothetical protein TERM 1816 1621800 - 1621836 + T 91 -11.8 -3.80189 | gap 1, opp_overlap 1621805, overlap 1621805 CAAATAAGATGTATA AAAAATGGCGAGTCTCC AATA GGA-ACTCGCCATTTTA TTTGAGTTAATCTGT TERM 1817 1621831 - 1621805 - T 100 -11.7 -5.30686 | gap 1, opp_overlap 1621800 1621805 AAGATGTATAAAAAA TGGCGAGTCTCC AATA GGA-ACTCGCCA TTTTATTTGAGTTAA TERM 1818 1621805 - 1621831 + T 100 -11.7 -4.94058 | gap 1, opp_overlap 1621805, overlap 1621800 AAGATGTATAAAAAA TGGCGAGTCTCC AATA GGA-ACTCGCCA TTTTATTTGAGTTAA Shal_1348 1622356 - 1621862 - | SmpA/OmlA domain-containing protein Shal_1349 1622862 - 1623668 + | uroporphyrin-III C/tetrapyrrole methyltransferase Shal_1350 1623746 - 1623958 + | hypothetical protein TERM 1819 1625199 - 1625188 - g 76 -4.4 -5.03314 | GTCACCGCCAAAAAA TACG TTAT CGTA AACTTGCATTAACCG Shal_1351 1623942 - 1625750 + | diguanylate cyclase TERM 1820 1626799 - 1626815 + G 79 -8.7 -4.36914 | CAAAAGCGTATCGAT TCAGGCG AGT TGCCTGA TTTTCTAGAAGAGAC Shal_1352 1626595 - 1628232 + | malate synthase TERM 1821 1628277 - 1628306 + F 100 -12.2 -4.8143 | TTGTAGCTTGTGTCC CCCGCACAGTAT TCCTAC GTGCTGTGCGGG TTTTTAAATTATTAA TERM 1822 1628361 - 1628376 + F 100 -10.4 -6.02546 | TTTGCTTGTGATTAT CGGCTC CTCG GAGCCG TTTTTTTTGCTTTGA TERM 1823 1629875 - 1629887 + G 78 -6.2 -4.57482 | TTGATAATCCTCGTT CGCC TAAGT GGCG TTTATTTATGGATGA Shal_1353 1628611 - 1630089 + | putative signal transduction protein TERM 1824 1630213 - 1630233 + T 90 -9.7 -4.45168 | opp_overlap 1630216, overlap 1630216 ATTTCAAGTTAACAA AAACGCTGC CTT GCAGCGTTA TTTATGTTTTAGCAC TERM 1825 1630230 - 1630216 - T 95 -11.4 -5.13741 | opp_overlap 1630213 1630216 TCAAGTTAACAAAAA CGCTGC CTT GCAGCG TTATTTATGTTTTAG TERM 1826 1630216 - 1630230 + T 93 -11.4 -4.32763 | opp_overlap 1630216, overlap 1630213 TCAAGTTAACAAAAA CGCTGC CTT GCAGCG TTATTTATGTTTTAG Shal_1354 1630755 - 1630264 - | hypothetical protein TERM 1827 1630641 - 1630653 + g 73 -7.7 -4.04319 | overlap 1630640 AGGCATCTAAAACCG CAGCA GCT TGCTG TTTATCACTTTCTGA Shal_1355 1631639 - 1630815 - | hypothetical protein TERM 1828 1631644 - 1631630 - G 75 -2.8 -5.22006 | opp_overlap 1631632, overlap 1631632 GCAGGATAAGAAAAA TAGCTA ACA TAGCTT TCCTTTCTATTAAGA Shal_1356 1632350 - 1631904 - | CopG family transcriptional regulator Shal_1357 1633053 - 1632310 - | hypothetical protein TERM 1829 1633210 - 1633232 + H 70 -2.7 -5.10208 | TTGATCTATTAAATT CGTCAACAG CATGA TTTTTGACG TTTTTATTGGGATTG TERM 1830 1633544 - 1633572 + H 91 -13.4 -3.20326 | opp_overlap 1633550, overlap 1633535 1633550 CTAGTCCGTGTATTG TACCAATCACAT ATATA ATGTGATTGGTA TTAGATCTGTATTTC TERM 1831 1633685 - 1633673 - g 71 -3.4 -4.7497 | GTGATGGATGAAAAA CTTC TGCTT GAAG CCATTACTCAAAAGA Shal_1358 1633661 - 1633894 + | hypothetical protein Shal_1359 1634073 - 1634375 + | NrfJ-related protein TERM 1832 1634428 - 1634452 + F 100 -17.3 -5.23292 | opp_overlap 1634418 1634428 AAGAATGAATCGAAA TGGCGTAGACT TTG AGTCTACGCCA TTTTATTTTGTGTCA TERM 1833 1634452 - 1634428 - f 100 -17.3 -3.827 | opp_overlap 1634428, overlap 1634418 AAGAATGAATCGAAA TGGCGTAGACT TTG AGTCTACGCCA TTTTATTTTGTGTCA TERM 1834 1634804 - 1634819 + G 73 -7.6 -4.0641 | GACTTTAACAGCCGT GGCTAT ATCG ATAGCC TTTATGTACATCCAG Shal_1360 1634543 - 1635052 + | GCN5-related N-acetyltransferase Shal_1361 1635144 - 1635683 + | GCN5-related N-acetyltransferase Shal_1362 1637552 - 1635786 - | 5'-nucleotidase TERM 1835 1637746 - 1637716 - R 95 -14.2 -3.1352 | opp_overlap 1637716 1637724, overlap 1637724 CGTTAACGCAAGAGA TTAAAAAAGGGAGC TAA GCTCCCTTTTTTCA ATTCAGTTAGCTAAA TERM 1836 1637716 - 1637747 + r 85 -12.6 -3.19371 | gap 1, opp_overlap 1637716 1637724, overlap 1637724 CGTTAACGCAAGAGA TT-AAAAAAGGGAGC TAA GCTCCCTTTTTTCAA TTCAGTTAGCTAAAT TERM 1837 1637738 - 1637724 - R 100 -11.4 -5.27399 | opp_overlap 1637716 1637724, overlap 1637716 CAAGAGATTAAAAAA GGGAGC TAA GCTCCC TTTTTTCAATTCAGT TERM 1838 1637724 - 1637738 + r 95 -11.4 -5.16572 | opp_overlap 1637724 1637716, overlap 1637716 CAAGAGATTAAAAAA GGGAGC TAA GCTCCC TTTTTTCAATTCAGT TERM 1839 1637756 - 1637767 + r 100 -4.4 -5.93252 | TTTTCAATTCAGTTA GCTA AATT TAGC TTTTTTCTTTTTCGA Shal_1363 1638833 - 1637763 - | hypothetical protein Shal_1364 1638993 - 1640114 + | hypothetical protein Shal_1365 1640135 - 1640935 + | type IV pilus biogenesis/stability protein PilW TERM 1840 1640996 - 1641010 + G 76 -7.8 -4.25104 | opp_overlap 1640978, overlap 1640978 TAGTGGATGAGCCGA CGCTCA CAC TGGGCG TTTTGCTAAAAACAG TERM 1841 1641424 - 1641398 - g 83 -13 -3.13728 | opp_overlap 1641406 1641413, overlap 1641406 ATTATTCACAGCCAA CCGCAGAAGAGG TTG CCGCTTCTGCAG AAGTCGGTCTTGCCA TERM 1842 1641612 - 1641581 - g 95 -13 -4.10791 | overlap 1641600 1641603 AACAGTCACAAACAA CTCAGTCACCAGCA GCAA CGCAGGCGACTGAG CCAGCCCAGATAGAA Shal_1366 1640935 - 1641918 + | hypothetical protein Shal_1367 1641941 - 1643056 + | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase TERM 1843 1643094 - 1643068 - f 81 -11.7 -2.8333 | gap 1, opp_overlap 1643068, overlap 1643065 1643063 1643074 GTAAGTACAATATCA TCACAAGC-CGC CTCT GCGTGCTTGTGA TTTTTTATGGGTGAA TERM 1844 1643068 - 1643094 + F 100 -11.7 -5.28176 | gap 1, opp_overlap 1643068 1643065 1643063 1643074 GTAAGTACAATATCA TCACAAGC-CGC CTCT GCGTGCTTGTGA TTTTTTATGGGTGAA TERM 1845 1643138 - 1643155 + F 82 -4.1 -5.50313 | opp_overlap 1643138 CGTTTAGTCTCGAAA CGCCT ATAATGTG AGGCG TTTTTTAATTTTATA TERM 1846 1643670 - 1643656 - g 93 -10 -4.63184 | AAGCTATGGGAAAAA CTCGGT ATT ACCGAG CATGTGACCTTAGAG Shal_1368 1643194 - 1644468 + | histidyl-tRNA synthetase TERM 1847 1645022 - 1645010 - g 84 -7.7 -4.79451 | AGGTGAAACAGAAAA GGCAA AGG TTGCC TATCAAACTGCGGTA Shal_1369 1644483 - 1645103 + | tetratricopeptide TPR_4 Shal_1370 1645115 - 1646302 + | outer membrane protein assembly complex subunit YfgL TERM 1848 1646326 - 1646349 + F 93 -11 -4.99435 | opp_overlap 1646325 1646326 GTTAGAGATGATAAG GCCCCTGGAT GTGT ATCTGGGGGC TTTTTAGTTATTAGA Shal_1371 1646388 - 1647860 + | GTP-binding protein EngA TERM 1849 1647917 - 1647902 - f 88 -9 -4.48823 | opp_overlap 1647902, overlap 1647897 AAGTAATTTACAAAA GGAACC TCAG GGTTCC TTTTTTGTTTATATA TERM 1850 1647902 - 1647917 + F 100 -9 -5.76237 | opp_overlap 1647902 1647897 AAGTAATTTACAAAA GGAACC TCAG GGTTCC TTTTTTGTTTATATA TERM 1851 1648718 - 1648690 - g 73 -11.2 -2.59039 | gap 1, opp_overlap 1648689 1648711, overlap 1648678 1648689 1648711 AATTATGGTTACAAC CCATATGGGTATG GTTA CA-ACCCATATGG CTATGGTTATAATTG Shal_1372 1648363 - 1648944 + | hypothetical protein TERM 1852 1649039 - 1649067 + F 74 -4.8 -4.72863 | gap 2, opp_overlap 1649042 1649045, overlap 1649042 TATTAGGATGAATAA T-AAGAAGCCC-TA AAT TATGGGCTTCTTCA TTTTAGTTTATTTCA TERM 1853 1649042 - 1649063 + F 73 -8.1 -3.79902 | gap 1, opp_overlap 1649042 1649045, overlap 1649039 TAGGATGAATAATAA GAAGCCC-TA AAT TATGGGCTTC TTCATTTTAGTTTAT TERM 1854 1649063 - 1649042 - f 75 -8.1 -4.00445 | gap 1, opp_overlap 1649039 1649042, overlap 1649045 TAGGATGAATAATAA GAAGCCC-TA AAT TATGGGCTTC TTCATTTTAGTTTAT TERM 1855 1649345 - 1649331 - f 81 -7.2 -4.57063 | TTAAAATACAATAAA CACATT AAA AATGTG ATCAAACTGAATTAT Shal_1373 1649627 - 1651075 + | uracil-xanthine permease TERM 1856 1651079 - 1651061 - T 93 -2.4 -6.35605 | opp_overlap 1651065, overlap 1651065 CAAGATAAAAAAAAA TCAGCTAC AGA GTAGTTAA GTTCTTGTGTAGCGC Shal_1374 1653051 - 1651426 - | methyl-accepting chemotaxis sensory transducer TERM 1857 1653454 - 1653440 - R 84 -7 -4.87892 | opp_overlap 1653439, overlap 1653442 TCTTAACAAAATAAA GGGGCG AAG CGCCAC GACTTTTTATCAAAC TERM 1858 1653512 - 1653497 - R 70 -2.6 -5.08088 | opp_overlap 1653480 1653470 1653498, overlap 1653470 AAGTTTGAACAAAAA TTTCGT TTGA ACAAAA ATTTTCGAATGAAGT Shal_1375 1654888 - 1653551 - | exodeoxyribonuclease VII large subunit Shal_1376 1655008 - 1656480 + | inositol-5-monophosphate dehydrogenase TERM 1859 1656525 - 1656497 - f 81 -11.9 -2.88249 | opp_overlap 1656502, overlap 1656502 1656511 TAGAGTTTTTAGATA TTAAAGGCGAC AGATAAA GTCGCCTTTAA ATTAAGCCAAGTAGA TERM 1860 1656520 - 1656502 - f 71 -7.4 -3.88498 | opp_overlap 1656502, overlap 1656497 1656511 TTTTTAGATATTAAA GGCGAC AGATAAA GTCGCC TTTAAATTAAGCCAA Shal_1377 1656605 - 1658182 + | bifunctional GMP synthase/glutamine amidotransferase protein TERM 1861 1658256 - 1658231 - f 100 -17.7 -4.48072 | opp_overlap 1658231 ATACCGATGAGAAAA GCGCGCACATA GCAA TATGTGCGCGC TTTTTTATACCAGCG TERM 1862 1658231 - 1658256 + F 100 -17.7 -5.24129 | opp_overlap 1658231 ATACCGATGAGAAAA GCGCGCACATA GCAA TATGTGCGCGC TTTTTTATACCAGCG TERM 1863 1658485 - 1658497 + F 74 -9.1 -3.53811 | opp_overlap 1658466 AATGCTTGAGCGCTT CCCAC AGG GTGGG TTTCAAAGCACTGCA TERM 1864 1659059 - 1659049 - g 76 -2.4 -5.32699 | opp_overlap 1659051, overlap 1659051 CTAAAGACGAAAAAA CGGG CGC CGCG GGTACCGTTATCGAT Shal_1378 1658751 - 1659242 + | CMP/dCMP deaminase zinc-binding Shal_1379 1660992 - 1659565 - | lytic transglycosylase catalytic TERM 1865 1659736 - 1659746 + g 83 -2.4 -5.70829 | ATTGCCACGAGCATA ACCG TAA CGGG TTTTTTTGTAGTATT TERM 1866 1662583 - 1662572 - g 74 -5.8 -4.60487 | GAGCATGTGCAAAAA GGTG AGAT CACC GTTGGCGCTAAGCTA Shal_1380 1661297 - 1665178 + | phosphoribosylformylglycinamidine synthase TERM 1867 1665222 - 1665240 + F 100 -10.3 -6.02546 | opp_overlap 1665222 CGTTTGCTAAAAAAA GCCCCTA ATTTG TAGGGGC TTTTTTTTGCTTTAG TERM 1868 1665240 - 1665222 - f 100 -10.3 -5.40072 | opp_overlap 1665222 CGTTTGCTAAAAAAA GCCCCTA ATTTG TAGGGGC TTTTTTTTGCTTTAG TERM 1869 1665458 - 1665435 - f 100 -13.2 -5.76633 | opp_overlap 1665433 GCAGATATAAAAAAA GCCCTCCTTG TTTC CAAGAAGGGC CGCTTTGCGCTAACA TERM 1870 1665781 - 1665803 + F 78 -10.7 -3.03034 | opp_overlap 1665784, overlap 1665778 1665784 TAATTCGCGCCCATC CAATCGCTT TTGGT AAGCGATTG TAATTTATCGAATTT Shal_1381 1666385 - 1667941 + | cytochrome bd ubiquinol oxidase subunit I Shal_1382 1667957 - 1669096 + | cytochrome d ubiquinol oxidase, subunit II Shal_1383 1669112 - 1669228 + | cyd operon protein YbgT TERM 1871 1669276 - 1669257 - T 88 -10.6 -3.98775 | opp_overlap 1669258, overlap 1669258 AGAAACTTAAGTAAA GGCCCCGC AATC GCGGGGCT TTTTGTTTTAAAATA TERM 1872 1669275 - 1669258 - T 95 -14.1 -2.98181 | opp_overlap 1669258, overlap 1669257 GAAACTTAAGTAAAG GCCCCGC AATC GCGGGGC TTTTTGTTTTAAAAT TERM 1873 1669258 - 1669275 + T 100 -14.1 -5.46706 | opp_overlap 1669258 1669257 GAAACTTAAGTAAAG GCCCCGC AATC GCGGGGC TTTTTGTTTTAAAAT TERM 1874 1669705 - 1669668 - T 86 -9.4 -3.9693 | gap 2 TAGCTAGTTAAAGAA CTTG-TG-ACTAGGCCTC TTTA GAAGCCTAGTGCAGCAAG AAAACTTGTAGCGAG Shal_1384 1670303 - 1669731 - | hypothetical protein TERM 1875 1670484 - 1670461 - R 93 -8.2 -5.4505 | opp_overlap 1670461 TGCTTGAATAAAAAA GGCAACAG TGTGATAG CTGTTGCC TTTATGACTTAATCA TERM 1876 1670461 - 1670484 + r 83 -8.9 -3.98826 | opp_overlap 1670461 TGCTTGAATAAAAAA GGCAACAGT GTGATA GCTGTTGCC TTTATGACTTAATCA Shal_1385 1672531 - 1670528 - | methyl-accepting chemotaxis sensory transducer TERM 1877 1672503 - 1672517 + g 83 -6.4 -4.99861 | AGCAAGCCTATTTGT TTGGCT ATA GGCCAA TTTTTATAATTCATA TERM 1878 1672558 - 1672570 + r 71 -4.9 -4.56597 | TTTGCTTGTGGTGCG TCAAT GTA ATTGA TTTTTACGAAAAAAG TERM 1879 1672985 - 1672957 - R 100 -12.5 -4.63486 | opp_overlap 1672961 AGGGCTGGAAGAAAA TGAAGTGCCCACC AGT GATGTGCACTTCA TCGAATTAAAAGCCG Shal_1387 1676105 - 1673013 - | acriflavin resistance protein Shal_1388 1677223 - 1676111 - | RND family efflux transporter MFP subunit TERM 1880 1677299 - 1677282 - H 73 -8.5 -3.62478 | opp_overlap 1677282 1677282 1677283 1677285, overlap 1677285 1677287 TAATGAATGGTTAAA CTAGACT GCCT AGTCTAG TGATTCAAAACTAGA Shal_1389 1677418 - 1678032 + | TetR family transcriptional regulator TERM 1881 1678048 - 1678072 + T 90 -7.2 -5.2204 | opp_overlap 1678053, overlap 1678053 TGATTAGAATCATAA AAAAAGGAGC GAATA GCTCCTTTTA TTTTTATTGATTATC TERM 1882 1678053 - 1678067 + T 93 -7.1 -5.42605 | opp_overlap 1678053, overlap 1678048 AGAATCATAAAAAAA GGAGC GAATA GCTCC TTTTATTTTTATTGA TERM 1883 1678067 - 1678053 - T 100 -7.1 -5.73339 | opp_overlap 1678053 1678048 AGAATCATAAAAAAA GGAGC GAATA GCTCC TTTTATTTTTATTGA Shal_1390 1678676 - 1678101 - | hypothetical protein TERM 1884 1678345 - 1678376 + g 71 -7.4 -3.99275 | gap 1, opp_overlap 1678360, overlap 1678347 GTGGTATTGCCATCG GTTG-CATCATCGAA ACC TTCGGTGATGGCATC TTTCATCTTCTCTGC Shal_1391 1679187 - 1678708 - | hypothetical protein TERM 1885 1679288 - 1679261 - R 91 -13.6 -2.91582 | gap 1 TATGGGATTTAGATA CCGCTGCAGAATA CAA TATTC-GCAGCGG CATGAGGAGTTAAGC Shal_1392 1681727 - 1679298 - | hypothetical protein TERM 1886 1681858 - 1681843 - H 78 -7.6 -4.41616 | opp_overlap 1681843 ATCTTTTTAAATAAA TAGGAG CTAG CTCCTA TTACATTGCTTATTT TERM 1887 1682476 - 1682488 + G 74 -3.4 -5.07486 | opp_overlap 1682473, overlap 1682464 GGTGCAACTAAACTT GCTT CTGAC AAGC TTTTTGTTGCAGCTA Shal_1393 1682056 - 1683057 + | polysaccharide biosynthesis protein CapD Shal_1394 1683054 - 1684202 + | DegT/DnrJ/EryC1/StrS aminotransferase TERM 1888 1684221 - 1684249 + T 80 -10.3 -3.66732 | opp_overlap 1684225, overlap 1684223 AGGCTCAGAGGCGTT AATAGCGGCGATC ACT GATAGCCGCTATC TTATTAAACTCGTTA TERM 1889 1684223 - 1684247 + T 93 -12.9 -3.40878 | opp_overlap 1684225, overlap 1684221 GCTCAGAGGCGTTAA TAGCGGCGATC ACT GATAGCCGCTA TCTTATTAAACTCGT TERM 1890 1684245 - 1684225 - T 78 -11.1 -3.03771 | opp_overlap 1684223 1684221 TCAGAGGCGTTAATA GCGGCGATC ACT GATAGCCGC TATCTTATTAAACTC Shal_1395 1685453 - 1684245 - | acylneuraminate cytidylyltransferase TERM 1891 1684727 - 1684760 + g 74 -6 -4.65666 | overlap 1684726 GATCTGCTTTTTTCT GCTTAACATGGGCA TTTATC TGCCTAAGTGAAGC TTCTTTTTTGAGTGT Shal_1396 1687406 - 1685457 - | glycoside hydrolase family protein Shal_1397 1687760 - 1688740 + | acylneuraminate cytidylyltransferase TERM 1892 1688773 - 1688783 + F 85 -4 -5.67063 | ATATGCCTCTCGCAC TACT TTT AGTA TTTTTTTATCGTCAA Shal_1398 1688858 - 1689781 + | methyltransferase type 12 Shal_1399 1689813 - 1691024 + | methyltransferase type 11 Shal_1400 1691027 - 1692805 + | transketolase central region Shal_1401 1692805 - 1693557 + | short-chain dehydrogenase/reductase SDR TERM 1893 1693533 - 1693543 + F 71 -6.8 -4.11751 | overlap 1693512 GGTACTCGCTGTGAG TGGC GGC GCCA TTTTAGGAGCTTAAT Shal_1402 1693561 - 1694793 + | hypothetical protein TERM 1894 1694807 - 1694832 + T 100 -14.9 -5.08601 | opp_overlap 1694807 AGCAATTAATAAAAA GCCCTTTTAAG CGTA CTTAAAAGGGC TTTTTATTAGAGTCG TERM 1895 1694832 - 1694807 - T 100 -14.9 -5.20534 | opp_overlap 1694807 AGCAATTAATAAAAA GCCCTTTTAAG CGTA CTTAAAAGGGC TTTTTATTAGAGTCG Shal_1403 1695760 - 1694900 - | N-acetylneuraminic acid synthase domain-containing protein Shal_1404 1696310 - 1697062 + | methyltransferase type 11 Shal_1405 1697441 - 1698706 + | sodium:dicarboxylate symporter Shal_1406 1700161 - 1698803 - | beta-lactamase domain-containing protein Shal_1407 1701074 - 1700241 - | AraC family transcriptional regulator Shal_1408 1701957 - 1703189 + | hydrogenase, Fe-only TERM 1896 1703364 - 1703354 - g 80 -6.8 -4.59027 | AATGACTATATAAAA GCAC GTA GTGC AGGTTTATATAAAGA Shal_1409 1703204 - 1703524 + | iron hydrogenase small subunit Shal_1410 1703538 - 1704218 + | formate dehydrogenase, putative TERM 1897 1704248 - 1704275 + F 100 -12.8 -4.4773 | opp_overlap 1704248 CCTTCTAACGACAAA GCAGTAGTTACC TTTA GGTAGCTGCTGC TTTTGATTGCTATAC TERM 1898 1704275 - 1704248 - f 79 -8.4 -4.05446 | opp_overlap 1704248 CCTTCTAACGACAAA GCAGTAGTTACC TTTA GGTAGCTGCTGC TTTTGATTGCTATAC TERM 1899 1704574 - 1704561 - g 75 -3.1 -5.1287 | opp_overlap 1704552 1704568 TCGAGAGGTAAAAAA TACCA TTTA CGGTA ACCGCATCGTTCTGT Shal_1411 1704310 - 1705752 + | thiamine biosynthesis protein ThiH TERM 1900 1705901 - 1705922 + G 86 -13.1 -3.38812 | opp_overlap 1705900 1705899, overlap 1705899 CGATTTATACTAATT TTGCCCACT CTGA AGTGGGCAA TCTTATTCGCAGAAA Shal_1412 1705792 - 1706406 + | hypothetical protein Shal_1413 1706418 - 1707440 + | biotin synthase Shal_1414 1707442 - 1708683 + | small GTP-binding protein TERM 1901 1708883 - 1708914 + F 100 -16.8 -2.56046 | opp_overlap 1708892, overlap 1708872 CTTTGTATATCGTGA TGGTAACTACCTAC TTCT GTAGGTGGTTACCA TCAATTAGGCTTTGC TERM 1902 1709256 - 1709242 - f 75 -10 -2.92516 | opp_overlap 1709241 1709239 1709242, overlap 1709236 1709241 AACAGGATAGGAAAG CTCCCT CCT AGGGAG TCTGTTTTGTAACAT TERM 1903 1709242 - 1709256 + F 79 -10 -3.48517 | opp_overlap 1709236 1709242 1709241, overlap 1709241 1709239 AACAGGATAGGAAAG CTCCCT CCT AGGGAG TCTGTTTTGTAACAT TERM 1904 1710047 - 1710029 - g 83 -10.4 -3.68209 | opp_overlap 1710026 AAGATAAAGAATTAA GTGGTTTT GTA AAAACCAC AGATATTGAGCTTAT Shal_1415 1709701 - 1710696 + | beta-lactamase domain-containing protein TERM 1905 1711467 - 1711477 + G 79 -3.2 -5.37593 | TAATTCCAAAAGATT TGGG GTA TCCA TTTTTTAATTTCAAA Shal_1416 1710689 - 1712155 + | hypothetical protein TERM 1906 1712687 - 1712697 + G 76 -4 -4.99861 | opp_overlap 1712687, overlap 1712681 1712678 AATGCTGAATAATAA CAAT ATA ATTG TTTTTATCCTTCCTA TERM 1907 1713853 - 1713843 - g 72 -5.4 -4.431 | CACGCAGTTATAAAA GATG TCA CATC AATAGTTCTTGCTGA Shal_1417 1712142 - 1714655 + | helicase domain-containing protein Shal_1418 1716086 - 1714965 - | hypothetical protein TERM 1908 1715323 - 1715333 + g 82 -3.2 -5.56112 | TTTAACGGGTAGAGG GCAT CGA GTGC TTTTTTGATTTTTCT Shal_1419 1717962 - 1716793 - | hypothetical protein Shal_1420 1718419 - 1719048 + | hypothetical protein TERM 1909 1719256 - 1719268 + G 71 -7.7 -3.96327 | GCGGCTTATCGAGAG CTTGC CGA GCAAG TTTATGGTCAGCAGT Shal_1421 1719049 - 1719495 + | hypothetical protein Shal_1422 1720615 - 1720190 - | FlgN family protein TERM 1910 1720263 - 1720285 + g 73 -9.9 -3.3164 | TAAGTCAGGCTAGAC GCGTTACGG CTGAC CTGTAACGC TTGTGAAAATCGATT TERM 1911 1720525 - 1720537 + g 71 -3.3 -4.75372 | overlap 1720516 1720514 CATCGGCTTGCTGTG CATGC AAG GCTTG TTTTTCCTGGCTAAT Shal_1423 1721005 - 1720691 - | anti-sigma-28 factor, FlgM Shal_1424 1721926 - 1721153 - | flagellar basal body P-ring biosynthesis protein FlgA Shal_1425 1722147 - 1723067 + | response regulator receiver modulated CheW protein Shal_1426 1723208 - 1724041 + | MCP methyltransferase, CheR-type TERM 1912 1724089 - 1724073 - f 86 -9.4 -4.07568 | opp_overlap 1724073 GTGCTCCTCTGAAAA CGCGTC GTTAT GACGCG TTTTTTAAATCTAAT TERM 1913 1724073 - 1724089 + F 93 -10.1 -5.13473 | opp_overlap 1724073 GTGCTCCTCTGAAAA CGCGTCG TTA TGACGCG TTTTTTAAATCTAAT Shal_1427 1724217 - 1724615 + | flagellar basal body rod protein FlgB Shal_1428 1724618 - 1725034 + | flagellar basal body rod protein FlgC TERM 1914 1725190 - 1725200 + G 79 -8.2 -4.25056 | opp_overlap 1725190, overlap 1725193 CTGAGCAGACATCAA CGGG AAA CCCG TTTCTTGATGGACTA Shal_1429 1725060 - 1725863 + | flagellar basal body rod modification protein TERM 1915 1726121 - 1726109 - g 70 -4.8 -4.49756 | TTGCAAACAGCAAAA CCAC TGTCG GTGG TGGCGTCGCGACGAG Shal_1430 1725952 - 1727313 + | flagellar hook protein FlgE TERM 1916 1727354 - 1727323 - f 73 -6.6 -4.14392 | gap 1, opp_overlap 1727331, overlap 1727328 1727331 CGTTAATCTTTAAAA GCTA-AGAAGGGCGG ACT CCGTCCTTCTATAGA GTCAAAGGCTGAGAC TERM 1917 1727348 - 1727328 - f 80 -11.1 -3.37091 | opp_overlap 1727331, overlap 1727323 1727331 ATCTTTAAAAGCTAA GAAGGGCGG ACT CCGTCCTTC TATAGAGTCAAAGGC TERM 1918 1727331 - 1727345 + F 74 -9.2 -3.50393 | opp_overlap 1727331 1727328 1727323 TTTAAAAGCTAAGAA GGGCGG ACT CCGTCC TTCTATAGAGTCAAA TERM 1919 1728494 - 1728469 - g 70 -9.8 -2.96723 | opp_overlap 1728468 1728472, overlap 1728472 ATGATGAAAACAGCA GAAGAGAACG ATCGCG CGTCCTCTTC CTTAATGCGCATAAG Shal_1431 1727770 - 1728513 + | flagellar basal body rod protein FlgF Shal_1432 1728524 - 1729312 + | flagellar basal body rod protein FlgG Shal_1433 1729335 - 1730009 + | flagellar basal body L-ring protein Shal_1434 1730044 - 1731138 + | flagellar basal body P-ring protein Shal_1435 1731167 - 1732273 + | peptidoglycan hydrolase Shal_1436 1732317 - 1734236 + | flagellar hook-associated protein FlgK Shal_1437 1734300 - 1735490 + | flagellar hook-associated protein FlgL Shal_1438 1735585 - 1736406 + | flagellin domain-containing protein TERM 1920 1736476 - 1736507 + F 90 -8.9 -4.98672 | opp_overlap 1736474 1736476 AATAGCTGAGAAAGA TCCATATTGACTG TTGATT CAGTGAATATGGA TTTTGTGTTTTTAGC TERM 1921 1736507 - 1736476 - f 74 -8.9 -3.54848 | opp_overlap 1736476, overlap 1736474 AATAGCTGAGAAAGA TCCATATTGACTG TTGATT CAGTGAATATGGA TTTTGTGTTTTTAGC Shal_1439 1736714 - 1737532 + | flagellin domain-containing protein TERM 1922 1737582 - 1737604 + F 93 -10.6 -4.66814 | opp_overlap 1737581 1737582 AGCGGTAATTTAAAG GGGAGATTCG TAA TGAGTCTCCC TTTGTTGTTTGTATT Shal_1440 1737674 - 1738060 + | flagellar protein FlaG protein Shal_1441 1738103 - 1739467 + | flagellar hook-associated 2 domain-containing protein Shal_1442 1739499 - 1739819 + | hypothetical protein Shal_1443 1739826 - 1740236 + | flagellar protein FliS TERM 1923 1740253 - 1740270 + F 90 -8.4 -4.96762 | opp_overlap 1740252 1740250 1740253 AATTGATAAAAATAG GGAGGC GTTGAA GCCTCC TTTTTGTCATCTGTC Shal_1444 1740519 - 1741952 + | sigma-54 dependent trancsriptional regulator TERM 1924 1741989 - 1741962 - f 83 -10.6 -3.73783 | gap 1, overlap 1741965 GATTGAAGCTAAGAA GGACGCCCT-GCA GGC TGCTAGGGCGTTC GCAGGCTCACTTCGA TERM 1925 1741986 - 1741965 - f 78 -10.9 -2.96329 | gap 1, overlap 1741962 TGAAGCTAAGAAGGA CGCCCT-GCA GGC TGCTAGGGCG TTCGCAGGCTCACTT TERM 1926 1742942 - 1742921 - g 76 -8.1 -4.09685 | gap 1, overlap 1742932 CGGCACTGGGTAAAA TGGTG-GCAA CAC TTGCGCACCA AGTCAGAACGCCGTT Shal_1445 1742467 - 1743591 + | PAS/PAC sensor signal transduction histidine kinase TERM 1927 1743637 - 1743619 - g 79 -12.4 -2.80074 | opp_overlap 1743635, overlap 1743616 1743614 GCTTGTAGAAGATGA CGCCTCAC TGC GCGAGGCG CTGCTCGATACCTTG TERM 1928 1743995 - 1743985 - g 74 -6.8 -4.25104 | opp_overlap 1743985 CGTTGCTGATGAAAA GAGC TTG GCTC TATTGGCACTCGCAC TERM 1929 1744531 - 1744486 - g 83 -14.1 -2.75064 | gap 1, opp_overlap 1744485 1744479 1744498 1744512, overlap 1744483 GCCTTCATTGAATCA GCGCC-CAGCAGATATCTTGCC CTT GGCAAGGCATCTGCTGCAGCGG CATGCATTGATTGCT Shal_1446 1743584 - 1744936 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1930 1745750 - 1745722 - g 72 -3.1 -4.9725 | overlap 1745726 ATCGCCAGAGAAAAA TCCAGCGTTGCTT TTG AAGCAACCGTGCA AGTGCGCAATAAGCT Shal_1447 1745473 - 1745805 + | flagellar hook-basal body complex subunit FliE TERM 1931 1745993 - 1746004 + G 70 -2.2 -4.93898 | CGCTTGCTATCTGTC TAGC CTTA GCTG TTTTTGTGATGATCT TERM 1932 1747164 - 1747207 + G 72 -10.2 -2.79684 | opp_overlap 1747162 1747163 1747179, overlap 1747162 1747166 1747174 TCAGCTGATAGAAGC CGCGCCAGCACCAGAGCTGT GGGA GCAGCCATGGTTTTGGCGTG TACTTAGGTTAGTGC Shal_1448 1745848 - 1747548 + | flagellar MS-ring protein Shal_1449 1747538 - 1748584 + | flagellar motor switch protein G TERM 1933 1748805 - 1748783 - gf 70 -9.2 -3.16217 | opp_overlap 1748781, overlap 1748781 GTGAAATTGAAGATA TTCGTGCTCA CGC TGAGCAAGAA GGCTTTGCCGAGGGG Shal_1450 1748584 - 1749567 + | flagellar assembly protein FliH Shal_1451 1749536 - 1750876 + | flagellum-specific ATP synthase Shal_1452 1750952 - 1751398 + | flagellar export protein FliJ Shal_1453 1751674 - 1753185 + | flagellar hook-length control protein Shal_1454 1753250 - 1753768 + | flagellar basal body-associated protein FliL Shal_1455 1753814 - 1754842 + | flagellar motor switch protein FliM Shal_1456 1754855 - 1755232 + | flagellar motor switch protein TERM 1934 1755356 - 1755371 + G 72 -2.6 -4.99645 | overlap 1755357 GTTGGTGGCTTGATT TTAGTA TTAC TACTGA TTTTCTTTCTAGCCT Shal_1457 1755245 - 1755616 + | flagellar biosynthesis protein FliO Shal_1458 1755613 - 1756362 + | flagellar biosynthesis protein FliP Shal_1459 1756370 - 1756639 + | flagellar biosynthetic protein FliQ Shal_1460 1756754 - 1757551 + | flagellar biosynthesis protein FliR TERM 1935 1757529 - 1757546 + F 79 -9.1 -3.80461 | gap 1 TGCTTGAGCTGCAGT GCCGCGCC GAC GGCG-GGC TTTAATAATGCGTTA Shal_1461 1757618 - 1758751 + | flagellar biosynthesis protein FlhB TERM 1936 1759525 - 1759564 + G 74 -3.8 -4.93661 | gap 1, opp_overlap 1759515, overlap 1759514 1759526 TAAAGGGTGATGCCA TCGCCGGT-ATATTAAT TCTTGTT ATTAATATCGTCGGCGG TTTTATTATTGGTAT Shal_1462 1758900 - 1760999 + | flagellar biosynthesis protein FlhA TERM 1937 1761500 - 1761490 - g 80 -6.8 -4.56133 | CGCGAACAAGCAAAA CAGC AGT GCTG AAATGGACGCGATGA Shal_1463 1761011 - 1762423 + | flagellar biosynthesis regulator FlhF Shal_1464 1762410 - 1763309 + | cobyrinic acid ac-diamide synthase Shal_1465 1763302 - 1764021 + | flagellar biosynthesis sigma factor Shal_1466 1764082 - 1764465 + | response regulator receiver protein Shal_1467 1764479 - 1765216 + | chemotaxis phosphatase, CheZ TERM 1938 1765621 - 1765644 + G 70 -8.9 -3.38812 | overlap 1765610 1765619 AAGCGCAGGTGAACT GCTTCCTTC TGAAAT GGAGGAAGC TGTTGTTAAGGCGCC Shal_1468 1765229 - 1767532 + | CheA signal transduction histidine kinase TERM 1939 1767547 - 1767569 + F 95 -11.4 -5.08824 | GCTCTGGTTAGCTTA GGGAATAACG CTT TGTTATTCCC TTTTTTACATACAGC Shal_1469 1767620 - 1768810 + | chemotaxis-specific methylesterase Shal_1470 1768803 - 1769525 + | hypothetical protein TERM 1940 1769606 - 1769620 + F 70 -2.8 -5.04385 | ATTTGAGCCGTGTAA TAACAC CGA GGGTTA TTTTTTGAAAATCTG TERM 1941 1770207 - 1770220 + G 83 -9.5 -4.16842 | opp_overlap 1770198 GATAAACGCACTCGC GCGGC CTCA GCCGC TTTGTTGCAACTGAA Shal_1471 1769625 - 1770416 + | cobyrinic acid ac-diamide synthase TERM 1942 1770507 - 1770497 - g 77 -6.8 -4.46609 | ACAAAATAACACAAA GCCA TTA TGGC CAAAGCAGATTGCCA Shal_1472 1770400 - 1771341 + | CheW protein Shal_1473 1771654 - 1772145 + | CheW protein Shal_1474 1772302 - 1772706 + | hypothetical protein Shal_1475 1773466 - 1773158 - | FlhB domain-containing protein Shal_1476 1775133 - 1773583 - | hypothetical protein TERM 1943 1774884 - 1774899 + g 73 -4 -4.87892 | overlap 1774885 AGCCATCTTTTCGTT TTGCAA GTTG TTGCAG TTTCTTTTCTTGAGC TERM 1944 1775120 - 1775106 - G 71 -7.2 -4.07687 | opp_overlap 1775105 ATTGTTGCCCTAAAA GGTTAA CGC TTAACC CTGATTTACTCATTT Shal_1477 1775519 - 1776289 + | VacJ family lipoprotein Shal_1478 1776386 - 1777492 + | response regulator receiver protein Shal_1479 1778117 - 1777479 - | hypothetical protein Shal_1480 1778816 - 1779169 + | S23 ribosomal protein TERM 1945 1779451 - 1779472 + T 100 -13.1 -5.37345 | opp_overlap 1779451 ATTAAAAACAAAAAA GCCAGAAGA GTTA TCTTCTGGC TTTTTTATGCTTCAA TERM 1946 1779472 - 1779451 - T 100 -13.1 -5.95286 | opp_overlap 1779451 ATTAAAAACAAAAAA GCCAGAAGA GTTA TCTTCTGGC TTTTTTATGCTTCAA Shal_1481 1781162 - 1779657 - | amino acid/peptide transporter TERM 1947 1780695 - 1780682 - G 75 -6.7 -4.42386 | overlap 1780684 1780693 TGCCCATGTAGAAAA TGGTG AATG CACCA TCACGGCGATGATCG TERM 1948 1780700 - 1780712 + g 76 -9.1 -3.78034 | opp_overlap 1780693 TGAATGCACCATCAC GGCGA TGA TCGCC TTCTTCATATAGGTC Shal_1482 1781604 - 1782140 + | transcriptional acivator RfaH Shal_1483 1783501 - 1786275 + | polysaccharide export protein Shal_1484 1786380 - 1786775 + | hypothetical protein TERM 1949 1787361 - 1787385 + G 71 -7.2 -4.08692 | opp_overlap 1787361 CCATTTAAGCCAGAA CCTTCAATGC AAGAA GCATTTAAGG TTTTCAAAAAAGTTA Shal_1485 1786839 - 1787816 + | lipopolysaccharide biosynthesis protein Shal_1486 1788071 - 1789225 + | dTDP-glucose 4,6 dehydratase TERM 1950 1789915 - 1789925 + G 74 -5.4 -4.63486 | opp_overlap 1789894 CATGAAAGCCTTCAT GAAG CCT CTTC TTTTGTTCAAACCAT Shal_1487 1789222 - 1790109 + | glucose-1-phosphate thymidylyltransferase TERM 1951 1790490 - 1790462 - g 83 -14 -2.71325 | opp_overlap 1790458, overlap 1790459 1790458 GTATGTAGAAAGTGA CACCACAAACCC ACAAG GGGTTTATGGTG AAAGTAAGTTGGCGG Shal_1488 1790109 - 1790990 + | dTDP-4-dehydrorhamnose reductase TERM 1952 1791334 - 1791353 + G 76 -4.2 -5.0916 | gap 1, overlap 1791338 1791339 CGTCAGCTTTGGGTT CCAGAGGGC TTT GCCCA-TGG TTTTTATGTTACAAG Shal_1489 1790995 - 1791549 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 1953 1791596 - 1791610 + G 70 -2.1 -4.95302 | AAGGAAATAAAATAA TAGCG AAAAA TGCTA TTTTCTTGTATTTAA TERM 1954 1791718 - 1791740 + G 73 -2 -5.09895 | overlap 1791714 ATTTACAATGTCGTT GGTAGCAT CGTTTTA ATGCTGTC TTTTTTAAATACGTC TERM 1955 1791974 - 1791988 + G 76 -8.6 -4.1196 | overlap 1791967 ATTTTTCATTGTTGT CAGCAA GTG TTGCTG TTTTGCAAGTACCTT Shal_1490 1791556 - 1793094 + | polysaccharide biosynthesis protein Shal_1491 1793108 - 1794127 + | glycosyl transferase family protein TERM 1956 1794580 - 1794544 - g 71 -3.7 -4.77079 | opp_overlap 1794553, overlap 1794553 1794577 TATACATTAACAAAA CTAATGCAACGTGGTGA GAT TCAGCACGTAATATCAG TTAAGTCTGATGATA Shal_1492 1794184 - 1795545 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 1957 1795852 - 1795836 - g 71 -3.8 -4.85782 | opp_overlap 1795836 CTTTTCAAAAATAAA TTATCA ATTGA TGATAA GTGTTTTGAGCAATT Shal_1493 1795614 - 1796723 + | hypothetical protein TERM 1958 1796846 - 1796828 - g 74 -6 -4.67982 | opp_overlap 1796831, overlap 1796829 TTTTACCTAATAAAA TCATCATC GTA GATGATGG TTCAACTGATGGCTC TERM 1959 1796845 - 1796829 - g 73 -9.5 -3.40307 | opp_overlap 1796831, overlap 1796828 TTTACCTAATAAAAT CATCATC GTA GATGATG GTTCAACTGATGGCT Shal_1494 1796710 - 1797609 + | glycosyl transferase family protein Shal_1495 1797627 - 1798823 + | hypothetical protein TERM 1960 1799329 - 1799347 + G 89 -4.6 -5.64274 | opp_overlap 1799333 1799335 TCAAGAAAACTAGGA GATATATC TAA GATAGATC TTTTTTTGTCGGTAA Shal_1496 1798798 - 1799994 + | glycosyl transferase group 1 Shal_1497 1800054 - 1801109 + | hypothetical protein Shal_1498 1801152 - 1802228 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 1961 1802621 - 1802633 + G 76 -4.1 -4.99043 | AATCTTTACCTTATC TCAGC CGC GTTGA TTTTGTTTATCGGGG Shal_1499 1802396 - 1803442 + | undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase TERM 1962 1803464 - 1803488 + T 86 -9.4 -4.09551 | overlap 1803469 CCTTATATTTATTTA GAAAATCTCC TAATT GGGGATTTTC TTGTTTGTAGGCTTT TERM 1963 1803469 - 1803483 + T 72 -3.5 -5.05116 | overlap 1803464 TATTTATTTAGAAAA TCTCC TAATT GGGGA TTTTCTTGTTTGTAG Shal_1500 1805300 - 1803807 - | beta-lactamase domain-containing protein TERM 1964 1804310 - 1804326 + g 73 -2.2 -5.1764 | CTAATACGGCTTTGG CCTCTG AATCC CACAGG TTTTTATATTCTATA Shal_1501 1805885 - 1807054 + | UDP-glucose/GDP-mannose dehydrogenase Shal_1502 1807480 - 1808490 + | NAD-dependent epimerase/dehydratase TERM 1965 1808886 - 1808916 + F 93 -8.4 -5.3104 | opp_overlap 1808886 AAGCAAAAGAAAAGA GCTAAAGTGATGAA TTG TTTATCGCTTTTGC TTTTGTTTTTCCTAG Shal_1503 1809065 - 1809634 + | dTDP-4-dehydrorhamnose 3,5-epimerase TERM 1966 1810003 - 1810017 + T 73 -8.6 -3.69506 | opp_overlap 1810011, overlap 1810002 1810008 1810011 CCTCAGAGCGGAGCG TCCTAG AAC CTAGGA TCTTATTTTAACCTA Shal_1504 1811427 - 1810030 - | CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase Shal_1505 1811882 - 1811427 - | glycerol-3-phosphate cytidylyltransferase Shal_1506 1813377 - 1811935 - | nucleotidyl transferase TERM 1967 1812125 - 1812139 + g 78 -5 -4.95547 | ACTCCATATTCGCTA TCAGCA AGT TGTTGA TTTTGTTGTTGTGAC TERM 1968 1812418 - 1812430 + g 79 -4.1 -5.23316 | overlap 1812406 CACCTTGCTACTGGT TCGCA AGT TGTGA TTTTTTGCTATGATA Shal_1507 1815556 - 1813388 - | WecB/TagA/CpsF family glycosyl transferase Shal_1508 1816884 - 1815775 - | glycosyl transferase family protein Shal_1509 1818217 - 1816874 - | polysaccharide biosynthesis protein TERM 1969 1817549 - 1817563 + g 93 -10 -4.67038 | CGCTTTGGAGCTTGC TGGCAG TAG CTGCCA TTTTGATTTTGGAGC TERM 1970 1818644 - 1818629 - R 76 -7.6 -4.21827 | GCAAAGATGGTAAAA TCTGAG ATGG CTCAGA GCCGGAAACAGCAAA Shal_1510 1820016 - 1818748 - | hypothetical protein TERM 1971 1819018 - 1819004 - GR 79 -8.6 -4.04579 | TTGACAAACAGTAAA CCATAC CAA GTATGG TGCGAGCCTATCGGC TERM 1972 1819722 - 1819695 - GR 84 -7.8 -4.66953 | gap 1, opp_overlap 1819720 CCAATAGTGGAAAAA TGGCCAAAAGTGC CCA GC-CTTTTGCCCA GCCGATACTGGATTT Shal_1511 1821383 - 1819974 - | hypothetical protein TERM 1973 1821431 - 1821413 - R 71 -9.6 -2.78384 | overlap 1821417 TGTGCTTCTATTACA GCAACTCT AGT AGAGTCGC TGGGACGAGTACTTC Shal_1512 1822709 - 1821408 - | polysaccharide export protein Shal_1513 1823087 - 1822722 - | anti-sigma-factor antagonist TERM 1974 1823507 - 1823519 + r 72 -9.1 -3.35798 | opp_overlap 1823506 1823507 CGTCACTTCGAGAAC GTCGC GTT GCGAC TTCTAGGTAGAAGCT TERM 1975 1823710 - 1823730 + r 77 -6.1 -4.56914 | opp_overlap 1823709 1823710 1823711, overlap 1823711 AGAGGGCAATAAAAG TCAAAGCTG GTG CGGCTTTGC TTTTGATTTCCCTAA TERM 1976 1823711 - 1823729 + r 75 -9.6 -3.33425 | opp_overlap 1823709 1823710 1823711, overlap 1823710 GAGGGCAATAAAAGT CAAAGCTG GTG CGGCTTTG CTTTTGATTTCCCTA Shal_1514 1824550 - 1824161 - | putative anti-sigma regulatory factor, serine/threonine protein kinase Shal_1515 1825795 - 1824560 - | response regulator receiver modulated serine phosphatase Shal_1516 1826107 - 1826973 + | phosphonate ABC transporter, periplasmic phosphonate-binding protein TERM 1977 1827661 - 1827641 - g 72 -2.6 -4.96848 | gap 1, opp_overlap 1827645, overlap 1827645 GGTTGCAGATAAAAA TCAG-GCTC TAGA GAGCGCTAA TATCAGACTCAATGC Shal_1517 1826973 - 1830515 + | multi-sensor hybrid histidine kinase Shal_1518 1830631 - 1832142 + | two component, sigma54 specific, Fis family transcriptional regulator TERM 1978 1832238 - 1832218 - f 89 -9.8 -4.26076 | opp_overlap 1832218 CTATGTTGATGAAAA GAGTAGAC TAACG GTCTACTC TTTTTTTGTTTGAAA TERM 1979 1832218 - 1832238 + F 100 -10.5 -5.95539 | opp_overlap 1832218 CTATGTTGATGAAAA GAGTAGACT AAC GGTCTACTC TTTTTTTGTTTGAAA Shal_1519 1832276 - 1833025 + | putative hydrolase Shal_1520 1833063 - 1834190 + | dTDP-4-dehydrorhamnose reductase TERM 1980 1834506 - 1834533 + T 77 -9.9 -3.57144 | opp_overlap 1834506 CTTCTTAGAAAAAAA GGCAAAAGCAG GTAGAA CTGCTTATGCC TTTGAAGCTAAACGA TERM 1981 1834533 - 1834506 - T 100 -9.9 -5.60993 | opp_overlap 1834506 CTTCTTAGAAAAAAA GGCAAAAGCAG GTAGAA CTGCTTATGCC TTTGAAGCTAAACGA Shal_1521 1836086 - 1834620 - | hypothetical protein TERM 1982 1835728 - 1835738 + g 74 -8.2 -3.88291 | ATTTCTGCAGATACT GCCG CTT CGGC TTTATCGCGATAGTC TERM 1983 1838745 - 1838731 - g 70 -5 -4.39568 | ATCGATATATCAAAA CTGCTT GCC AAACAG CCTATTGGACAGTGG Shal_1522 1836376 - 1838925 + | glycoside hydrolase family 3 protein TERM 1984 1839119 - 1839131 + F 77 -7.7 -4.1466 | opp_overlap 1839119 AATTTAATAATCCAA CAGAC TTA GTCTG TTTTCGACATTAAAT Shal_1523 1839228 - 1840013 + | 3'(2'),5'-bisphosphate nucleotidase TERM 1985 1840295 - 1840311 + G 71 -7.9 -3.95674 | AAAGGGCACTGTGGG CGTTGGG ATC CCCGGCG TTGTTTCACCATTTT Shal_1524 1840113 - 1841006 + | fructokinase TERM 1986 1841024 - 1841050 + F 76 -2.4 -5.4505 | CAAGGATTTCAGCAG CAGTAATAAA CCTTACA TTTCTTACTG TTTTTTATTGGGAAC Shal_1525 1841173 - 1841934 + | hypothetical protein TERM 1987 1842272 - 1842303 + F 73 -5.8 -4.59853 | opp_overlap 1842275, overlap 1842275 CCGTCAATTCTTTGA GAAGGTCCTAGGCT CTTG AGCCTTGAACCTTG TTTTTAAAAGATTGA TERM 1988 1842300 - 1842275 - f 75 -9.7 -3.30159 | opp_overlap 1842272 1842275 TCAATTCTTTGAGAA GGTCCTAGGCT CTTG AGCCTTGAACC TTGTTTTTAAAAGAT TERM 1989 1842275 - 1842300 + F 78 -7.5 -4.40963 | opp_overlap 1842275, overlap 1842272 TCAATTCTTTGAGAA GGTCCTAGGCT CTTG AGCCTTGAACC TTGTTTTTAAAAGAT TERM 1990 1842750 - 1842738 - g 70 -4.8 -4.42851 | opp_overlap 1842738 GGAATAAAGTTAAAA CTGG TGAGT CCAG TCTTAGAGTGTATCT Shal_1526 1842390 - 1843055 + | hypothetical protein Shal_1527 1843568 - 1843146 - | hypothetical protein Shal_1528 1844150 - 1843671 - | ferredoxin-type protein NapF TERM 1991 1844090 - 1844103 + g 72 -5.3 -4.59773 | TAACCCAAGGAGGAC GAATG GCAT CATTC TTTTTACGGCTGAAA Shal_1529 1845350 - 1844331 - | UDP-glucose 4-epimerase Shal_1530 1846344 - 1845436 - | UTP-glucose-1-phosphate uridylyltransferase TERM 1992 1847357 - 1847370 + G 74 -8.1 -3.96148 | overlap 1847351 1847350 GGATCTTAAGCTCTC CAGGG GAGA CCCTG TTTGTGATGAGCGAA Shal_1531 1846792 - 1847583 + | phenylalanine 4-monooxygenase TERM 1993 1847616 - 1847592 - f 86 -10.1 -4.0825 | opp_overlap 1847591 GGGTTAAGTAAAGAA TCAGCCTTCAA ATA TTGAATGCTGA GTATTGAATAATAAA Shal_1532 1847656 - 1847994 + | pterin-4-alpha-carbinolamine dehydratase TERM 1994 1849221 - 1849200 - g 74 -10.2 -3.13403 | opp_overlap 1849199 1849198, overlap 1849198 TGGCGGCGATGAAGA GATCCGCA GTGATG TGCGGATC ATCTGTTCGACCCAA Shal_1533 1848208 - 1849755 + | transcriptional regulator, TyrR TERM 1995 1849805 - 1849845 + F 100 -16.5 -3.67517 | opp_overlap 1849806, overlap 1849806 AACTCGCGACTAAAA ATTATACTTACGGGCTATT TTT AATAGCCTGTAAGTATAAG TTTACAATGTTGATG TERM 1996 1849844 - 1849806 - f 100 -17.8 -4.7254 | opp_overlap 1849805 1849806 ACTCGCGACTAAAAA TTATACTTACGGGCTATT TTT AATAGCCTGTAAGTATAA GTTTACAATGTTGAT TERM 1997 1849806 - 1849844 + F 100 -20 -2.80028 | opp_overlap 1849806, overlap 1849805 ACTCGCGACTAAAAA TTATACTTACGGGCTATT TTT AATAGCCTGTAAGTATAA GTTTACAATGTTGAT Shal_1534 1850016 - 1851002 + | fumarylacetoacetate (FAA) hydrolase TERM 1998 1851033 - 1851054 + F 100 -9.5 -5.30686 | opp_overlap 1851033 1851024 AGAATATTGATAAAA GGCTAATTC TTGG GAGTTAGCC TTTTTTCTAAATGTT TERM 1999 1851054 - 1851033 - f 78 -7.3 -4.47873 | opp_overlap 1851033, overlap 1851024 AGAATATTGATAAAA GGCTAATTC TTGG GAGTTAGCC TTTTTTCTAAATGTT TERM 2000 1851568 - 1851582 + G 90 -7 -5.40004 | opp_overlap 1851560 TGGAAAAGCAATTAG CGCGGC ATA GCGGCG TTTTTTGCTTTGGTG Shal_1535 1851114 - 1851764 + | maleylacetoacetate isomerase Shal_1536 1852834 - 1851923 - | LysR family transcriptional regulator TERM 2001 1851950 - 1851982 + g 85 -6.9 -5.00884 | opp_overlap 1851953 1851954, overlap 1851952 1851953 CATTAGAAACTCGAC GAATGCCCTGTCGGC TTG GCTGATAGGGCGCTG TTTTTTCCAAGCGAT TERM 2002 1851952 - 1851980 + g 83 -9.5 -4.13561 | opp_overlap 1851953 1851954, overlap 1851950 1851953 TTAGAAACTCGACGA ATGCCCTGTCGGC TTG GCTGATAGGGCGC TGTTTTTTCCAAGCG TERM 2003 1851953 - 1851979 + g 82 -13 -3.07655 | opp_overlap 1851953 1851954, overlap 1851952 1851950 TAGAAACTCGACGAA TGCCCTGTCGGC TTG GCTGATAGGGCG CTGTTTTTTCCAAGC TERM 2004 1852732 - 1852744 + g 83 -10.5 -3.73775 | GCTGTGCCATATTGA GCCGC TCG GCGGC TTTGGTGAAGCTACC Shal_1537 1853012 - 1854241 + | major facilitator transporter Shal_1538 1854573 - 1854346 - | hypothetical protein TERM 2005 1856846 - 1856874 + G 72 -8.9 -3.53444 | CGTGATAAGGCTCCA CGCGATACAGATG AAC CATTTGTAGTGCG TTTCAAAAACCCTAC TERM 2006 1857332 - 1857342 + G 74 -6.8 -4.26076 | opp_overlap 1857332 GATGATATCAATAAA GCAG CTT CTGC TTTTAATACAGATAA TERM 2007 1857342 - 1857332 - g 74 -6.8 -4.30177 | opp_overlap 1857332 GATGATATCAATAAA GCAG CTT CTGC TTTTAATACAGATAA TERM 2008 1857599 - 1857587 - g 88 -7.7 -5.00884 | ACTGCCGCTAAAAAA CACCT TAG AGGTG TAGCACTTGAGCCAC Shal_1539 1856456 - 1857865 + | glutamyl-tRNA synthetase TERM 2009 1859356 - 1859370 + T 70 -2.8 -5.06414 | opp_overlap 1859351 1859363, overlap 1859360 1859361 AAAGAAGAGAGCGCC TAGGAC ACC GTGCTA TTTTTATTAAAAGCA TERM 2010 1859361 - 1859393 + T 71 -9.9 -2.91807 | opp_overlap 1859351 1859363 1859384, overlap 1859356 1859360 AGAGAGCGCCTAGGA CACCGTGCTATTTTT ATT AAAAGCAGCACGGCG GTTTCACTTTAATAG TERM 2011 1859391 - 1859363 - T 77 -11.1 -2.78935 | opp_overlap 1859356 1859361 1859360, overlap 1859384 AGAGCGCCTAGGACA CCGTGCTATTTTT ATT AAAAGCAGCACGG CGGTTTCACTTTAAT TERM 2012 1859907 - 1859872 - T 82 -10.6 -3.47573 | opp_overlap 1859869 1859875 1859883, overlap 1859873 1859875 1859883 TCATTTAGATGATAA GTACAAATAAACCACC TTTA GGTGGTTTTTTTGTAT CTGAATTTTGACAAT TERM 2013 1859906 - 1859873 - T 93 -14.1 -2.68223 | opp_overlap 1859869 1859875 1859883, overlap 1859872 1859875 1859883 CATTTAGATGATAAG TACAAATAAACCACC TTTA GGTGGTTTTTTTGTA TCTGAATTTTGACAA TERM 2014 1859904 - 1859875 - T 83 -12.3 -2.88069 | opp_overlap 1859875 1859869 1859883, overlap 1859873 1859872 1859883 TTTAGATGATAAGTA CAAATAAACCACC TTTA GGTGGTTTTTTTG TATCTGAATTTTGAC TERM 2015 1859875 - 1859904 + T 84 -12.3 -3.00786 | opp_overlap 1859873 1859872 1859875 1859883, overlap 1859869 1859883 TTTAGATGATAAGTA CAAATAAACCACC TTTA GGTGGTTTTTTTG TATCTGAATTTTGAC TERM 2016 1859883 - 1859896 + T 100 -8.1 -5.76633 | opp_overlap 1859883 1859875 1859873 1859872, overlap 1859875 1859869 ATAAGTACAAATAAA CCACC TTTA GGTGG TTTTTTTGTATCTGA TERM 2017 1859896 - 1859883 - T 82 -8.1 -4.63526 | opp_overlap 1859875 1859869 1859883, overlap 1859875 1859873 1859872 ATAAGTACAAATAAA CCACC TTTA GGTGG TTTTTTTGTATCTGA TERM 2018 1860266 - 1860283 + T 71 -9.9 -2.78504 | opp_overlap 1860266, overlap 1860263 1860261 GATATCGCATTGAAA GCCATCA ATAC TGATGGC TCCTATATGTTGTTA TERM 2019 1860283 - 1860266 - T 79 -9.9 -3.66378 | opp_overlap 1860266 1860263 1860261 GATATCGCATTGAAA GCCATCA ATAC TGATGGC TCCTATATGTTGTTA Shal_1540 1862151 - 1860322 - | ABC transporter related TERM 2020 1860699 - 1860733 + g 79 -2.2 -5.57396 | gap 1, opp_overlap 1860718, overlap 1860701 GATTACCCTCAGGAT CGCTCAAG-GTTTGA ATAAAC TCATACGCTTGAGAG TTTTTTATTGCTTGT Shal_1541 1862328 - 1863830 + | AraC family transcriptional regulator Shal_1542 1863827 - 1864390 + | methylated-DNA--protein-cysteine methyltransferase Shal_1543 1864577 - 1865905 + | DEAD/DEAH box helicase domain-containing protein TERM 2021 1865940 - 1865956 + F 84 -8 -4.8048 | opp_overlap 1865939 1865940 ATCGCATATCAAAAT GGACTC TTAAT GAGTCC TTTTTGATATAAGAA TERM 2022 1866186 - 1866174 - g 76 -7.7 -4.20783 | opp_overlap 1866174 AGCGGACCCAATAAA GATCC TTG GGATC TACTTGAGTTAAAAG Shal_1544 1866114 - 1866584 + | dual specificity protein phosphatase TERM 2023 1866634 - 1866612 - g 78 -4.9 -4.99312 | AATAGAATAATAAAA TGAATGCAA ATGGA TTGCATGCA CTTACCTTTTTTAAA Shal_1545 1866611 - 1868155 + | phospholipase D/transphosphatidylase Shal_1546 1868247 - 1869149 + | response regulator receiver modulated CheW protein Shal_1547 1869330 - 1870553 + | serine/threonine transporter SstT TERM 2024 1870609 - 1870576 - T 100 -16.9 -2.72511 | opp_overlap 1870581, overlap 1870581 GTTATCGCTTTAAAC TAAAAGCCCGTTCAC CTAG GTGAACGGGCTTTTT TGTGGTTGATAGTGC TERM 2025 1870604 - 1870581 - T 100 -16.8 -4.54727 | opp_overlap 1870581, overlap 1870576 CGCTTTAAACTAAAA GCCCGTTCAC CTAG GTGAACGGGC TTTTTTGTGGTTGAT TERM 2026 1870581 - 1870604 + T 100 -16.8 -5.38249 | opp_overlap 1870581 1870576 CGCTTTAAACTAAAA GCCCGTTCAC CTAG GTGAACGGGC TTTTTTGTGGTTGAT Shal_1548 1870834 - 1870628 - | oxidoreductase domain-containing protein Shal_1549 1871168 - 1871578 + | hypothetical protein TERM 2027 1871625 - 1871664 + T 100 -16 -3.59315 | opp_overlap 1871633 1871638, overlap 1871633 GGTGAGGCAGTCTTC TACAGAAAGAAAAGGGGC GTTG GCCCCTTTTCTTTTTTTA TTTCAAACTGCTTGA TERM 2028 1871656 - 1871633 - T 100 -15.4 -4.03413 | opp_overlap 1871625 1871633, overlap 1871638 AGTCTTCTACAGAAA GAAAAGGGGC GTTG GCCCCTTTTC TTTTTTTATTTCAAA TERM 2029 1871633 - 1871656 + T 100 -15.4 -5.95539 | opp_overlap 1871633 1871638, overlap 1871625 AGTCTTCTACAGAAA GAAAAGGGGC GTTG GCCCCTTTTC TTTTTTTATTTCAAA TERM 2030 1871651 - 1871638 - T 93 -9.5 -5.05113 | opp_overlap 1871633 1871625, overlap 1871633 TCTACAGAAAGAAAA GGGGC GTTG GCCCC TTTTCTTTTTTTATT Shal_1550 1872330 - 1871662 - | lysozyme Shal_1551 1873067 - 1872474 - | hypothetical protein TERM 2031 1872561 - 1872572 + g 80 -5.8 -5.0133 | AAAGGCGATTTCAAT CTCG GTAT CGAG TTTTTTGACGCACTC Shal_1552 1873233 - 1873406 + | hypothetical protein Shal_1553 1873524 - 1874561 + | S-adenosylmethionine--tRNA-ribosyltransferase-isomerase TERM 2032 1874582 - 1874605 + F 100 -8.2 -5.71712 | opp_overlap 1874582 CAAATTGCTTTAAAA TACCCAGTTC ATAT GAAGTGGGTA TTTTTTTATCTGCAC TERM 2033 1874605 - 1874582 - f 75 -8.2 -4.10453 | opp_overlap 1874582 CAAATTGCTTTAAAA TACCCAGTTC ATAT GAAGTGGGTA TTTTTTTATCTGCAC Shal_1554 1874742 - 1875875 + | queuine tRNA-ribosyltransferase Shal_1555 1875903 - 1876235 + | preprotein translocase subunit YajC TERM 2034 1876840 - 1876889 + G 71 -10.1 -3.21416 | overlap 1876843 TCTTAAGTCTCGCAG CAATGACATGGTCTTCGTTGACA AGAC TGTAGGCGATGACTATGTCCTTG TTGCTAATCCAAGTG TERM 2035 1877353 - 1877338 - g 77 -9 -3.86252 | opp_overlap 1877352 TGTCACTAAAGATAA CATCGG TAAC CCGATG GCAACGCTATTTATC TERM 2036 1877405 - 1877395 - g 71 -6.8 -4.17762 | overlap 1877396 TACCGGTGAAAAGAA TGCC GAC GGCA GCGTTAAGATGAAGA Shal_1556 1876253 - 1878103 + | preprotein translocase subunit SecD Shal_1557 1878117 - 1879064 + | preprotein translocase subunit SecF TERM 2037 1879072 - 1879112 + F 82 -12 -3.09175 | opp_overlap 1879074 1879084, overlap 1879084 TGCCTTAATCGGTAT AAGCGTAAAAAAGCCACC GTTGA GGTGGCTTTTTTATGCGC TATTGGATGGCAATT TERM 2038 1879110 - 1879074 - f 100 -16.8 -3.33261 | opp_overlap 1879072 1879084, overlap 1879084 CCTTAATCGGTATAA GCGTAAAAAAGCCACC GTTGA GGTGGCTTTTTTATGC GCTATTGGATGGCAA TERM 2039 1879100 - 1879084 - f 93 -9.4 -5.11033 | opp_overlap 1879072 1879084, overlap 1879074 TATAAGCGTAAAAAA GCCACC GTTGA GGTGGC TTTTTTATGCGCTAT TERM 2040 1879084 - 1879100 + F 100 -9.4 -5.26918 | opp_overlap 1879084 1879074, overlap 1879072 TATAAGCGTAAAAAA GCCACC GTTGA GGTGGC TTTTTTATGCGCTAT Shal_1558 1879321 - 1879638 + | hypothetical protein Shal_1559 1879638 - 1879997 + | rhodanese domain-containing protein TERM 2041 1880018 - 1879977 - f 71 -6 -4.18018 | gap 1 TGGCTTGAGCGAAAA TTGCCGATAGAACACGACT AAACA AGTCGTAAACTATCG-CAA AGGTACAGCTCATCA Shal_1560 1880034 - 1880945 + | siroheme synthase TERM 2042 1881246 - 1881264 + G 76 -8.8 -3.72893 | opp_overlap 1881246 TGCTTTTGCCATGAA CGCCAGTG ACT CACTGACG TTTAGTAAAGGACTG TERM 2043 1881264 - 1881246 - g 77 -11 -3.14132 | opp_overlap 1881246 TGCTTTTGCCATGAA CGCCAGTG ACT CACTGACG TTTAGTAAAGGACTG Shal_1561 1881097 - 1881642 + | YaeQ family protein TERM 2044 1881715 - 1881698 - T 95 -11.3 -4.72986 | opp_overlap 1881698 TATGGGTATTAAAAA GCCAGTC AAAT GACTGGC TTTTTTACACTTCAA TERM 2045 1881698 - 1881715 + T 95 -11.3 -5.09426 | opp_overlap 1881698 TATGGGTATTAAAAA GCCAGTC AAAT GACTGGC TTTTTTACACTTCAA Shal_1562 1883182 - 1881743 - | carbon starvation protein CstA TERM 2046 1883261 - 1883308 + r 85 -7.1 -4.99861 | opp_overlap 1883267 1883268, overlap 1883262 GCAAATAGCTAAGCG GTCAAATTGCTAAGGTCAGTG GTTGTA TGCTGACCTTAGCGGTTGAAC TTTTTATCGTTACTG Shal_1563 1884028 - 1883318 - | putative two-component response-regulatory protein YehT Shal_1564 1885705 - 1884032 - | signal transduction histidine kinase, LytS TERM 2047 1884681 - 1884693 + g 71 -3.4 -4.78753 | AGTAGTCGGCCGAGA CCTT CGCCT AAGG TTTTATTGATATTGA Shal_1565 1885946 - 1886188 + | hypothetical protein TERM 2048 1886316 - 1886338 + T 100 -15 -4.86731 | opp_overlap 1886316 1886319 GCATGTTCTAACCAA CAAGCCTAAC AAT GTTAGGCTTG TTTTGTTTCCAGCAA TERM 2049 1886338 - 1886316 - T 100 -15 -3.34344 | opp_overlap 1886316, overlap 1886319 GCATGTTCTAACCAA CAAGCCTAAC AAT GTTAGGCTTG TTTTGTTTCCAGCAA TERM 2050 1886335 - 1886319 - T 86 -10.9 -3.81146 | opp_overlap 1886316, overlap 1886316 TGTTCTAACCAACAA GCCTAAC AAT GTTAGGC TTGTTTTGTTTCCAG Shal_1566 1886664 - 1886374 - | type IV pilus assembly PilZ TERM 2051 1886824 - 1886857 + r 100 -15.5 -3.69092 | opp_overlap 1886825 1886830, overlap 1886825 1886830 TTTTTGATCCCAGAA TTAAAACGCTCGAAG AGGG CTTCGAGCGTTTTGG TTTACAGTTCGTCTT TERM 2052 1886856 - 1886825 - R 95 -14.6 -2.59564 | opp_overlap 1886825 1886824 1886830, overlap 1886830 TTTTGATCCCAGAAT TAAAACGCTCGAAG AGGG CTTCGAGCGTTTTG GTTTACAGTTCGTCT TERM 2053 1886825 - 1886856 + r 100 -16.8 -2.80732 | opp_overlap 1886825 1886830, overlap 1886824 1886830 TTTTGATCCCAGAAT TAAAACGCTCGAAG AGGG CTTCGAGCGTTTTG GTTTACAGTTCGTCT TERM 2054 1886851 - 1886830 - R 100 -14.5 -4.49389 | opp_overlap 1886825 1886824 1886830, overlap 1886825 ATCCCAGAATTAAAA CGCTCGAAG AGGG CTTCGAGCG TTTTGGTTTACAGTT TERM 2055 1886830 - 1886851 + r 100 -14.5 -4.564 | opp_overlap 1886830 1886825, overlap 1886825 1886824 ATCCCAGAATTAAAA CGCTCGAAG AGGG CTTCGAGCG TTTTGGTTTACAGTT Shal_1567 1887266 - 1886859 - | phosphate-starvation-inducible E TERM 2056 1887463 - 1887448 - R 100 -10.4 -5.64274 | opp_overlap 1887448 TTAGGCATAAAAAAA CCGCCT TAAT AGGCGG TTATTATCGTCAACT TERM 2057 1887448 - 1887463 + r 84 -10.4 -3.84674 | opp_overlap 1887448 TTAGGCATAAAAAAA CCGCCT TAAT AGGCGG TTATTATCGTCAACT Shal_1568 1888287 - 1887487 - | inositol-phosphate phosphatase Shal_1569 1888444 - 1889199 + | RNA methyltransferase TERM 2058 1890004 - 1889991 - g 74 -8.1 -3.92869 | TTAGTGATGCAGAAA CTGCG GCAG CGCAG AAACGTCAGAAGTCT Shal_1570 1889225 - 1890046 + | serine O-acetyltransferase TERM 2059 1890138 - 1890096 - f 82 -8.7 -4.15222 | gap 2, opp_overlap 1890100 1890105, overlap 1890099 ATCTTGCCTAATAAA CAGG--TTAAATACCCCAGCA AAA TGACGGGGTATTTAATTCCTG TCATGATCCTATTAA TERM 2060 1890133 - 1890099 - f 71 -9.4 -2.80244 | opp_overlap 1890100 1890105, overlap 1890096 TTGCCTAATAAACAG GTTAAATACCCCAGCA AAA TGACGGGGTATTTAAT TCCTGTCATGATCCT TERM 2061 1890100 - 1890132 + F 80 -10.7 -3.30443 | opp_overlap 1890099 1890096, overlap 1890105 TGCCTAATAAACAGG TTAAATACCCCAGCA AAA TGACGGGGTATTTAA TTCCTGTCATGATCC TERM 2062 1890327 - 1890307 - g 70 -9.8 -3.07816 | opp_overlap 1890303, overlap 1890311 TTGCCATGCACTCAA CCAATGGT CCAGT ACCATTGG CCGATATTTCCGAGC Shal_1571 1890243 - 1890704 + | BadM/Rrf2 family transcriptional regulator Shal_1572 1890787 - 1892001 + | cysteine desulfurase IscS Shal_1573 1892042 - 1892425 + | scaffold protein Shal_1574 1892440 - 1892763 + | iron-sulfur cluster assembly protein IscA Shal_1575 1892782 - 1893306 + | co-chaperone HscB TERM 2063 1893356 - 1893329 - f 81 -11.4 -3.06261 | opp_overlap 1893311 1893330 TCTTAATTTTTAATA CTGTTGGCTCAA GACA TTGAGCCAACAT TTTTTTAAGTTGGAT TERM 2064 1893330 - 1893355 + F 100 -14.9 -5.53288 | opp_overlap 1893329, overlap 1893311 CTTAATTTTTAATAC TGTTGGCTCAA GACA TTGAGCCAACA TTTTTTTAAGTTGGA Shal_1576 1893376 - 1895238 + | chaperone protein HscA Shal_1577 1895247 - 1895582 + | ferredoxin, 2Fe-2S type, ISC system TERM 2065 1895624 - 1895645 + F 100 -10.2 -5.80951 | opp_overlap 1895624 AGCGTATTTATAAAA GCCAGTAG CCAAGT CTACTGGC TTTTTTGTTTTCAGT TERM 2066 1895645 - 1895624 - f 90 -10.2 -4.42653 | opp_overlap 1895624 AGCGTATTTATAAAA GCCAGTAG CCAAGT CTACTGGC TTTTTTGTTTTCAGT Shal_1578 1895855 - 1896052 + | hypothetical protein Shal_1579 1896270 - 1896434 + | hypothetical protein Shal_1580 1896663 - 1897094 + | nucleoside-diphosphate kinase TERM 2067 1897127 - 1897112 - f 91 -10.4 -4.64676 | opp_overlap 1897112 CGAGCGTGAATAAAA GGAGCC TAAT GGCTCC TTTTTTTTGCCTACT TERM 2068 1897112 - 1897127 + F 100 -10.4 -5.82316 | opp_overlap 1897112 CGAGCGTGAATAAAA GGAGCC TAAT GGCTCC TTTTTTTTGCCTACT TERM 2069 1897552 - 1897540 - f 82 -7.7 -4.57073 | opp_overlap 1897539 GAGTGCTGCTAAAAA CCTGA AGT TCAGG CATGTTTACTTATTT Shal_1581 1897918 - 1900671 + | TonB-dependent receptor TERM 2070 1900697 - 1900728 + T 70 -9.7 -2.6197 | gap 1, opp_overlap 1900697 1900704, overlap 1900704 GATTTAGTTAGATAA TAAAAAA-CCTCCG CAAGT CGGAGGTTTTTTTA TGGGTTACTCTTTGA TERM 2071 1900727 - 1900697 - T 88 -11.3 -3.524 | opp_overlap 1900697 1900704, overlap 1900704 GATTTAGTTAGATAA TAAAAAACCTCCG CAAGT CGGAGGTTTTTTT ATGGGTTACTCTTTG TERM 2072 1900704 - 1900720 + T 100 -9.4 -5.66684 | opp_overlap 1900697 1900704, overlap 1900697 TTAGATAATAAAAAA CCTCCG CAAGT CGGAGG TTTTTTTATGGGTTA TERM 2073 1900720 - 1900704 - T 100 -9.4 -5.60689 | opp_overlap 1900704 1900697, overlap 1900697 TTAGATAATAAAAAA CCTCCG CAAGT CGGAGG TTTTTTTATGGGTTA Shal_1582 1901131 - 1900775 - | TraR/DksA family transcriptional regulator Shal_1583 1902233 - 1901250 - | dihydrouridine synthase DuS Shal_1584 1902571 - 1903020 + | hypothetical protein TERM 2074 1903059 - 1903082 + F 100 -12.4 -4.32951 | opp_overlap 1903058, overlap 1903061 GGGTATTAAGTAGAT CTGGACCAGC AATT GCTGGTCCTG TTTGTTGATTAACCT TERM 2075 1903061 - 1903080 + F 95 -13.6 -3.7642 | opp_overlap 1903058, overlap 1903059 GTATTAAGTAGATCT GGACCAGC AATT GCTGGTCC TGTTTGTTGATTAAC Shal_1585 1903119 - 1903961 + | hypothetical protein Shal_1586 1903961 - 1904716 + | hypothetical protein Shal_1587 1904806 - 1904925 + | hypothetical protein TERM 2076 1904956 - 1904975 + F 90 -9.3 -4.84918 | AACTCGGTTATACTG GCCACTC AATATA GAGTGGC TTTTCTGTTTCTGGA Shal_1588 1904999 - 1905367 + | hypothetical protein Shal_1589 1905624 - 1906175 + | adenine phosphoribosyltransferase TERM 2077 1906259 - 1906245 - f 79 -8.6 -4.13767 | TTCTTTATCTTAAAA GGTGAT TTA ATCACC GCTAAATCGCTCCTC TERM 2078 1906287 - 1906311 + F 70 -8 -3.70109 | opp_overlap 1906289 CTCTGACGCTTGAGA TAGCATGTAA AAGCG TTGCATGCTA TTGTTCGATGATGTC Shal_1590 1906374 - 1909166 + | DNA polymerase III, subunits gamma and tau Shal_1591 1909267 - 1909596 + | hypothetical protein TERM 2079 1909671 - 1909718 + T 100 -16.8 -3.98016 | gap 1, opp_overlap 1909685, overlap 1909685 GCCAAATCCAGCGAT TAAAAACAAAAAAAGCTCAAGCA ATT TGCTTGAGCTTTTTT-GTTTGTA TGTTTTGTTAGTCGT TERM 2080 1909705 - 1909685 - T 100 -14.1 -6.20267 | opp_overlap 1909685 1909671 TTAAAAACAAAAAAA GCTCAAGCA ATT TGCTTGAGC TTTTTTGTTTGTATG TERM 2081 1909685 - 1909705 + T 100 -14.1 -5.76237 | opp_overlap 1909685, overlap 1909671 TTAAAAACAAAAAAA GCTCAAGCA ATT TGCTTGAGC TTTTTTGTTTGTATG Shal_1592 1910399 - 1909833 - | acetyltransferase TERM 2082 1910627 - 1910655 + H 89 -9.8 -4.27467 | opp_overlap 1910631 CATGAGTGGGCTGGA GTAACCTTTTTT CGGCT GAAAAAGGTTAC TTTATTCAATTATGA TERM 2083 1910764 - 1910777 + H 76 -6.7 -4.45517 | TTGTTGGCATAGATG GCCTA AAAA TAGGC TTTTATCGATAGTTT TERM 2084 1911513 - 1911502 - g 73 -2.2 -5.19328 | ACGCCACAAGAAAAA GCCA TTGC TGAC AAGACGTATAGAAAC TERM 2085 1911538 - 1911528 - g 71 -6.8 -4.08939 | CAAGACGTATAGAAA CAGC AAA GCTG AACATCACTGGGATG Shal_1593 1910914 - 1911600 + | Sel1 domain-containing protein Shal_1594 1911603 - 1912523 + | hypothetical protein Shal_1595 1912899 - 1913498 + | recombination protein RecR TERM 2086 1913551 - 1913576 + F 100 -6.1 -6.06723 | opp_overlap 1913551 TTCATAAATTAAAAT CCAGTCAGTGA CTTG TTGCCGACTGG TTTTTTTTTGCGCAA TERM 2087 1914951 - 1914973 + G 72 -8.4 -3.65991 | opp_overlap 1914952, overlap 1914952 1914954 CACACAGGCGAAGCA ACAGCCAATG TAT CGTTGGCTGA TTATGTTGAACGCAT TERM 2088 1914972 - 1914952 - g 73 -9.7 -3.37053 | opp_overlap 1914951 1914952 1914954 ACACAGGCGAAGCAA CAGCCAATG TAT CGTTGGCTG ATTATGTTGAACGCA TERM 2089 1914952 - 1914972 + G 77 -11.9 -2.79273 | opp_overlap 1914952, overlap 1914951 1914954 ACACAGGCGAAGCAA CAGCCAATG TAT CGTTGGCTG ATTATGTTGAACGCA Shal_1596 1913688 - 1915607 + | heat shock protein 90 TERM 2090 1915644 - 1915626 - f 77 -8.8 -3.79747 | opp_overlap 1915626 GCAGCTATGATTAAA GGGGCAGT TAC ACTGCCTC TTTTTTATGGTCCAG TERM 2091 1915626 - 1915644 + F 100 -11 -5.31275 | opp_overlap 1915626 GCAGCTATGATTAAA GGGGCAGT TAC ACTGCCTC TTTTTTATGGTCCAG Shal_1597 1915690 - 1916535 + | thioredoxin domain-containing protein Shal_1598 1916716 - 1917360 + | nucleoside-triphosphate--adenylate kinase TERM 2092 1917474 - 1917459 - f 88 -9 -4.64766 | opp_overlap 1917459 CTCATATTTTAAAAA GCCCAT GAAA ATGGGC TTTTTTTATGCTTTT TERM 2093 1917459 - 1917474 + F 100 -9 -5.77632 | opp_overlap 1917459 CTCATATTTTAAAAA GCCCAT GAAA ATGGGC TTTTTTTATGCTTTT Shal_1599 1917536 - 1918531 + | ferrochelatase Shal_1600 1918772 - 1920100 + | inosine kinase TERM 2094 1920157 - 1920185 + F 88 -8.2 -5.09225 | CGACATCCTGTAAAA GGCATAACTTGG TCATT CTGAGTTGTGCC TTTTTTGAATCGACT Shal_1601 1920228 - 1920782 + | hexapaptide repeat-containing transferase TERM 2095 1920856 - 1920885 + T 85 -12.3 -3.16668 | opp_overlap 1920862, overlap 1920862 GACATAATTTAGTAC AAAAAAGGCATCC AACT GGATGCCTTTTTA TTCATGCAGCTCTTA TERM 2096 1920862 - 1920879 + T 95 -11.3 -5.1356 | opp_overlap 1920862, overlap 1920856 ATTTAGTACAAAAAA GGCATCC AACT GGATGCC TTTTTATTCATGCAG TERM 2097 1920879 - 1920862 - T 100 -11.3 -5.31877 | opp_overlap 1920862 1920856 ATTTAGTACAAAAAA GGCATCC AACT GGATGCC TTTTTATTCATGCAG Shal_1602 1922271 - 1920946 - | sodium:dicarboxylate symporter TERM 2098 1922234 - 1922247 + g 85 -3.8 -5.48054 | CCGATTATAATCTTA CTCG TGAGAC CGAG TTTTTTGGTTTTCGT TERM 2099 1922940 - 1922989 + G 70 -9.5 -3.01791 | GAAGTGAGCAATGGC GCATCAATCGTTGTGTCATTA ACAGATAC TAATGGCGCACCTATTGATGC TATTACGACAACGAT Shal_1603 1922490 - 1924973 + | Ig domain-containing protein TERM 2100 1924990 - 1925006 + T 100 -15.1 -5.11033 | opp_overlap 1924990 TAATTGTAATGAAAA GCCCCGC AAT GCGGGGC TTTTTTACACTTGTA TERM 2101 1925006 - 1924990 - T 100 -15.1 -4.43309 | opp_overlap 1924990 TAATTGTAATGAAAA GCCCCGC AAT GCGGGGC TTTTTTACACTTGTA Shal_1604 1926384 - 1925047 - | succinylarginine dihydrolase TERM 2102 1927012 - 1926998 - g 71 -7.2 -4.02206 | AAGCCAAATATCAAA CTTTAC CTG GTAAAG AAAAAGTCGTTAAAG TERM 2103 1927900 - 1927912 + G 72 -9.1 -3.59649 | overlap 1927896 TCGGACATGGAGCGT GACGC ACA GCGTC TTTACGAGCTTATTT Shal_1605 1926721 - 1929402 + | DNA topoisomerase I TERM 2104 1929417 - 1929454 + T 100 -16.5 -3.43676 | opp_overlap 1929427, overlap 1929418 1929427 ATTTGTTTTTCTAAG CCATAAAAAAGCCCCGA ATCG TCGGGGCTTTTTTGTGC TTATGGATTAATGCA TERM 2105 1929418 - 1929453 + T 100 -20 -2.65884 | opp_overlap 1929427, overlap 1929417 1929427 TTTGTTTTTCTAAGC CATAAAAAAGCCCCGA ATCG TCGGGGCTTTTTTGTG CTTATGGATTAATGC TERM 2106 1929444 - 1929427 - T 100 -12.7 -5.31456 | opp_overlap 1929418 1929417 1929427 CTAAGCCATAAAAAA GCCCCGA ATCG TCGGGGC TTTTTTGTGCTTATG TERM 2107 1929427 - 1929444 + T 100 -12.7 -5.39755 | opp_overlap 1929427, overlap 1929418 1929417 CTAAGCCATAAAAAA GCCCCGA ATCG TCGGGGC TTTTTTGTGCTTATG Shal_1606 1930377 - 1929601 - | hypothetical protein Shal_1607 1930604 - 1931578 + | transcriptional regulator CysB TERM 2108 1931623 - 1931594 - T 87 -12.3 -3.31831 | opp_overlap 1931594 1931601, overlap 1931601 CAAAACATAAAAGCA TAAAAAACCTCGC TATT GCGAGGTTTTTTG TTTTTAGACGTTAAG TERM 2109 1931594 - 1931623 + T 100 -14.5 -4.62471 | opp_overlap 1931594 1931601, overlap 1931601 CAAAACATAAAAGCA TAAAAAACCTCGC TATT GCGAGGTTTTTTG TTTTTAGACGTTAAG TERM 2110 1931601 - 1931616 + T 100 -10.4 -5.93252 | opp_overlap 1931594 1931601, overlap 1931594 TAAAAGCATAAAAAA CCTCGC TATT GCGAGG TTTTTTGTTTTTAGA TERM 2111 1931616 - 1931601 - T 100 -10.4 -5.4588 | opp_overlap 1931601 1931594, overlap 1931594 TAAAAGCATAAAAAA CCTCGC TATT GCGAGG TTTTTTGTTTTTAGA TERM 2112 1931694 - 1931714 + T 88 -9 -4.62622 | opp_overlap 1931694 ACTCTACGATATTAA CCGCTAGG CCGCC CTTAGCGG TTTCTTTGTACTTAC Shal_1608 1933050 - 1931674 - | L-serine dehydratase 1 TERM 2113 1932347 - 1932357 + g 77 -6.8 -4.47707 | AGCTTGAGCCCGCCA GGCA GTA TGCC TTCTTTTTGGTAGCC TERM 2114 1933232 - 1933222 - H 74 -4 -5.10497 | opp_overlap 1933222 AATTGATGTAAAAAA GTAT CCC ATAC TTTGGCTTTTTCTCT Shal_1609 1933455 - 1934462 + | beta-hexosaminidase Shal_1610 1934536 - 1935072 + | hypothetical protein TERM 2115 1935106 - 1935133 + F 100 -11.4 -5.61596 | opp_overlap 1935105 TTAAGCCCAATAGAG CCACTTATAGCA ATCT TGCTGTAGGTGG TTTTTTTATGGGGAT TERM 2116 1935227 - 1935216 - f 70 -5.8 -4.47183 | overlap 1935212 TATTAGTTAAACAAA CCCT CGAT AGGG ATTGCACTAACGCTC TERM 2117 1935487 - 1935513 + G 86 -9.4 -4.39407 | opp_overlap 1935486 1935489, overlap 1935489 GTGGTGGTTGAAGAG GACGAGGCAGAT GAG ATCTACCTCGAC TTTTCAATTATTTAG TERM 2118 1935511 - 1935489 - g 78 -12.8 -2.73875 | opp_overlap 1935487 1935489, overlap 1935486 GGTGGTTGAAGAGGA CGAGGCAGAT GAG ATCTACCTCG ACTTTTCAATTATTT TERM 2119 1935489 - 1935511 + G 70 -10.6 -2.52451 | opp_overlap 1935489 1935486, overlap 1935487 GGTGGTTGAAGAGGA CGAGGCAGAT GAG ATCTACCTCG ACTTTTCAATTATTT Shal_1611 1935259 - 1935528 + | acylphosphatase Shal_1612 1936547 - 1935531 - | hypothetical protein TERM 2120 1936180 - 1936229 + g 71 -7 -4.05714 | gap 1, opp_overlap 1936177 1936178 1936189 CCATCACCTAAATGC GCGATAGCAGGCTTTGCCGCCGC TATCT GCATCGGCACATCC-GCCATCGC TTTATGGTTCGCACT TERM 2121 1936507 - 1936524 + g 70 -4.9 -4.4521 | gap 1, opp_overlap 1936507, overlap 1936505 GATAAAAGGCTAACA GCTAAAGC TGC GCTT-AGC TTGTTTTTAGATAGT Shal_1613 1940023 - 1936550 - | transcription-repair coupling factor TERM 2122 1936718 - 1936706 - G 71 -7.7 -3.97834 | opp_overlap 1936706 TAAGCCGATGATAAA GGTTG GGT CAACC TTGTTATTTTCACCA TERM 2123 1936706 - 1936718 + g 76 -7.7 -4.20868 | opp_overlap 1936706 TAAGCCGATGATAAA GGTTG GGT CAACC TTGTTATTTTCACCA TERM 2124 1939046 - 1939030 - G 100 -8.7 -5.36314 | opp_overlap 1939042 TAAAAGAGGAAAAAA CCTGCTC TGT AAGCAGG TACAGCTCTTGCGGT TERM 2125 1939969 - 1939983 + g 70 -10 -3.03441 | GTGTACACAGCGTTT GTGCCA ATT TGGCAC TCTTGACCGCTGGTG Shal_1614 1940721 - 1940113 - | hypothetical protein Shal_1615 1940960 - 1942183 + | LolC/E family lipoprotein releasing system, transmembrane protein Shal_1616 1942204 - 1942941 + | lipoprotein releasing system, ATP-binding protein Shal_1617 1942938 - 1944191 + | LolC/E family lipoprotein releasing system, transmembrane protein TERM 2126 1944222 - 1944251 + T 83 -7.1 -4.75174 | opp_overlap 1944225 1944228, overlap 1944224 1944225 1944228 GCTCTGCAAGTTTAA AAATAACGCCAGC ATCT GCTGGCGTTGGTC TTTTTGGCTTACCTA TERM 2127 1944224 - 1944249 + T 86 -9.7 -3.98859 | opp_overlap 1944225 1944228, overlap 1944222 1944225 1944228 TCTGCAAGTTTAAAA ATAACGCCAGC ATCT GCTGGCGTTGG TCTTTTTGGCTTACC TERM 2128 1944225 - 1944248 + T 91 -13.2 -2.98592 | opp_overlap 1944225 1944228, overlap 1944224 1944222 1944228 CTGCAAGTTTAAAAA TAACGCCAGC ATCT GCTGGCGTTG GTCTTTTTGGCTTAC TERM 2129 1944248 - 1944225 - T 93 -11 -4.66833 | opp_overlap 1944224 1944222 1944225 1944228, overlap 1944228 CTGCAAGTTTAAAAA TAACGCCAGC ATCT GCTGGCGTTG GTCTTTTTGGCTTAC TERM 2130 1944245 - 1944228 - T 100 -12.7 -4.44355 | opp_overlap 1944225 1944224 1944222 1944228, overlap 1944225 CAAGTTTAAAAATAA CGCCAGC ATCT GCTGGCG TTGGTCTTTTTGGCT TERM 2131 1944228 - 1944245 + T 90 -12.7 -3.61527 | opp_overlap 1944228 1944225, overlap 1944225 1944224 1944222 CAAGTTTAAAAATAA CGCCAGC ATCT GCTGGCG TTGGTCTTTTTGGCT Shal_1618 1944719 - 1944339 - | hypothetical protein TERM 2132 1945187 - 1945171 - g 77 -7.3 -4.46112 | TGGGATGCAAACAAA GCCACTA TTT TAGTGAC AGGTGGCGTGCATGG Shal_1619 1944940 - 1945854 + | zinc carboxypeptidase-related protein TERM 2133 1945892 - 1945934 + F 87 -3.5 -5.73339 | opp_overlap 1945902 1945903, overlap 1945903 CTGAAGTGAGCAGCT TTGATACAAAGGCCTCGTC ATTTA GATGAGGCTTTTTTATGAC TTTTTTTATGATTAT TERM 2134 1945903 - 1945923 + F 93 -9 -5.35222 | opp_overlap 1945902 1945903, overlap 1945892 AGCTTTGATACAAAG GCCTCGTC ATTTA GATGAGGC TTTTTTATGACTTTT Shal_1620 1946330 - 1946788 + | hypothetical protein TERM 2135 1946806 - 1946789 - T 73 -9.9 -3.14931 | opp_overlap 1946785 1946802 TTGAGTCCTGATTAA GCTTGCT TTAA AGCAAGC CTCACGTTTGTTGTT Shal_1621 1947496 - 1946936 - | hypothetical protein Shal_1622 1948097 - 1947588 - | hypothetical protein TERM 2136 1947980 - 1948006 + g 72 -10.2 -2.79492 | overlap 1947979 GTGTCATGCTTGCTT CAGACTTGGTGA CTA TCACTAAGTCGG CTTTACCGTTGGCCA Shal_1623 1948309 - 1949142 + | Ion transport protein Shal_1624 1949185 - 1950711 + | MATE efflux family protein TERM 2137 1950763 - 1950773 + T 73 -2.4 -5.1963 | CTTAGAGATTAATTT GCCG ACG CTGC TTTTTCTTCGTTCGC Shal_1625 1951001 - 1950756 - | hypothetical protein Shal_1626 1951258 - 1951572 + | hypothetical protein Shal_1627 1951741 - 1952400 + | TetR family transcriptional regulator TERM 2138 1952436 - 1952452 + G 79 -7.9 -4.49311 | CGATGGTATTTCTTT CCTGCGG TTG CCGTGGG TTTTGTGGTGCTGGT Shal_1628 1952400 - 1953743 + | RND family efflux transporter MFP subunit TERM 2139 1954375 - 1954354 - g 78 -6.5 -4.72497 | overlap 1954355 GATTGAGCAACAAAA CGTGCAGCT ACCT AGCGGCACA GTGGAGACCCCAAGT Shal_1629 1953740 - 1956856 + | acriflavin resistance protein TERM 2140 1956892 - 1956917 + F 100 -16.3 -5.08169 | opp_overlap 1956892 CATAGATAGTGAAAA GGCGCTAAATC TGAT GATTTAGCGCC TTTTTTAAAATGTAT TERM 2141 1956917 - 1956892 - f 100 -16.3 -4.27259 | opp_overlap 1956892 CATAGATAGTGAAAA GGCGCTAAATC TGAT GATTTAGCGCC TTTTTTAAAATGTAT Shal_1630 1957121 - 1957510 + | hypothetical protein TERM 2142 1957760 - 1957748 - T 82 -7.7 -4.56597 | TTTTGCTTTTAAAAA CATGG ATC CCATG GGTGATAATGAGCGC Shal_1631 1958657 - 1957728 - | hypothetical protein TERM 2143 1958688 - 1958672 - R 81 -2.9 -5.65927 | TACCCAAAGAAAAAA GCACACC TCG AGTACGC TCATATACAAACATA TERM 2144 1958825 - 1958800 - R 100 -17.7 -4.80882 | opp_overlap 1958800 AGGCCAGATTAAAAA GGCGCTAAACC ATCA GGTTTAGCGCC TTTTTAATCTAGAAG TERM 2145 1958800 - 1958825 + r 100 -17.7 -4.8048 | opp_overlap 1958800 AGGCCAGATTAAAAA GGCGCTAAACC ATCA GGTTTAGCGCC TTTTTAATCTAGAAG Shal_1632 1959645 - 1958860 - | purine phosphorylase family 1 TERM 2146 1958942 - 1958955 + g 74 -8.1 -3.87075 | opp_overlap 1958937 TCATAGACAAGATGC GCCGA GCCA TCGGC TTTATCAGAGATGGT TERM 2147 1959563 - 1959579 + g 75 -6.5 -4.45151 | overlap 1959564 1959575 ATTGGCTGAGATCTA GCTGCAG TAT CTGCAGG TTTTGCTTGAGTATT TERM 2148 1959564 - 1959578 + g 71 -10 -3.26006 | overlap 1959563 1959575 TTGGCTGAGATCTAG CTGCAG TAT CTGCAG GTTTTGCTTGAGTAT TERM 2149 1959878 - 1959903 + r 86 -10.5 -4.10612 | TATGTGCAGATGCTG CTGCGATGACA TCCT TGTCATCGAAG TTTGTGATTATGCCT Shal_1633 1960939 - 1959977 - | integral membrane protein TerC TERM 2150 1960885 - 1960869 - G 74 -7.3 -4.24342 | CTTGTGAGTAATAAA TCGATGC CAA GCATCAA TAGAGTGAGAAAGAC Shal_1634 1963043 - 1962081 - | integron integrase TERM 2151 1962406 - 1962384 - G 71 -3.4 -4.89063 | TGATGGAAAAACAAA CATCCAGCCA GCT TGCCTAAATG CATTGGGGTACTTAC TERM 2152 1963209 - 1963220 + H 81 -7.2 -4.53705 | opp_overlap 1963209 AATAGGTTTAATAAA CGCG CATG CGCG TTTTCTCTAAAAGTT TERM 2153 1963220 - 1963209 - H 76 -7.2 -4.17958 | opp_overlap 1963209 AATAGGTTTAATAAA CGCG CATG CGCG TTTTCTCTAAAAGTT TERM 2154 1963885 - 1963875 - g 100 -5.4 -6.09888 | opp_overlap 1963875 GGTTAATAAAAAAAA CCTT ATA AAGG ATTTATATAAAGGTG Shal_1635 1963366 - 1964715 + | hypothetical protein Shal_1636 1964868 - 1965596 + | hypothetical protein TERM 2155 1965615 - 1965629 + F 79 -5.7 -4.87893 | overlap 1965616 TCGCTTAAACCTGAC TGCCA ACCTG TGGCA TTTTTGGTTCGGGTT TERM 2156 1965616 - 1965647 + F 85 -7.2 -4.89477 | overlap 1965615 CGCTTAAACCTGACT GCCAACCTGTGGCA TTTT TGGTTCGGGTTGGC TTTTGTTATTACGGC Shal_1637 1965996 - 1966799 + | Ap4A phosphorylase II Shal_1638 1967530 - 1966988 - | hypothetical protein Shal_1639 1968207 - 1967776 - | glutathione-dependent formaldehyde-activating GFA Shal_1640 1968977 - 1968534 - | UspA domain-containing protein TERM 2157 1969338 - 1969348 + H 70 -5.4 -4.40963 | TACGTCGGCACTATT GTGT GTA ACAC TTGTTTTTAAAAAAT Shal_1641 1969558 - 1970820 + | sodium:dicarboxylate symporter TERM 2158 1970883 - 1970900 + T 95 -11.3 -4.93696 | opp_overlap 1970883 AGTTAACAATAGAAA GCCCTCT TTAT AGAGGGC TTTTTCGTATTTAAA TERM 2159 1970900 - 1970883 - T 93 -11.3 -4.34866 | opp_overlap 1970883 AGTTAACAATAGAAA GCCCTCT TTAT AGAGGGC TTTTTCGTATTTAAA Shal_1642 1971732 - 1970956 - | band 7 protein Shal_1643 1973262 - 1971751 - | hypothetical protein TERM 2160 1973902 - 1973887 - g 79 -3.2 -5.39755 | TATAACGATAAAAAA GGGC TTAGATGT GCCC ATAGCCGGTGAACCT TERM 2161 1974188 - 1974172 - g 100 -8.1 -5.09895 | opp_overlap 1974171 1974169 CACTGAGGCAAAAAA CTTTACA GCA TGTAAAG ATATTGACTCATTAA TERM 2162 1974986 - 1974996 + G 74 -6.8 -4.26903 | GGCGGCTCAGCGCGT GCCA TGA TGGC TTTTGGTCAGCTAGA Shal_1644 1973849 - 1975210 + | Na(+)-translocating NADH-quinone reductase subunit A TERM 2163 1976207 - 1976227 + G 73 -11.1 -2.55668 | overlap 1976206 TCGGTATGATGTTTA TGGCCACCG ATC CGGTGACCA CTTCATATACCACTA TERM 2164 1976323 - 1976312 - g 78 -5.8 -4.74103 | opp_overlap 1976317 1976320, overlap 1976313 TGGTGAATCCAAAAA TGCC TGAA GGCA TCATGCTTGCCATCT Shal_1645 1975210 - 1976424 + | Na(+)-translocating NADH-quinone reductase subunit B TERM 2165 1976454 - 1976476 + F 72 -9.2 -3.35639 | overlap 1976457 AAGGCGGCAGCGCGT CATTATTGGC AAT GCCGATGATG TTAATTGCCAATATT TERM 2166 1976590 - 1976604 + G 72 -5 -4.62069 | TTAAGAAAGATTCTT TTATGG GCA CCATGA TTTTTACCGTGACCC Shal_1646 1976568 - 1977338 + | Na(+)-translocating NADH-quinone reductase subunit C TERM 2167 1977562 - 1977604 + G 79 -12.3 -2.82516 | gap 2, opp_overlap 1977551 1977574 1977576 ACAGTGTGCGTATTA TCGCCCA-GATGAC-AGTGAT AGC ATCACTGGTCATCGTGGTCGA TATGGTGCTGCAAGA Shal_1647 1977342 - 1977965 + | Na(+)-translocating NADH-quinone reductase subunit D Shal_1648 1977974 - 1978582 + | Na(+)-translocating NADH-quinone reductase subunit E Shal_1649 1978641 - 1979858 + | Na(+)-translocating NADH-quinone reductase subunit F Shal_1650 1979931 - 1980011 + | hypothetical protein TERM 2168 1980060 - 1980031 - f 91 -13.7 -2.6914 | opp_overlap 1980031 1980037, overlap 1980037 TAGCTTTGATATAAC TACAAACGCAGCC TCAT GGCTGCGTTTTTA TTTTCAGCCCTAAAC TERM 2169 1980031 - 1980060 + F 100 -13.7 -4.09685 | opp_overlap 1980031 1980037, overlap 1980037 TAGCTTTGATATAAC TACAAACGCAGCC TCAT GGCTGCGTTTTTA TTTTCAGCCCTAAAC TERM 2170 1980037 - 1980054 + F 100 -12.7 -5.45802 | opp_overlap 1980031 1980037, overlap 1980031 TGATATAACTACAAA CGCAGCC TCAT GGCTGCG TTTTTATTTTCAGCC TERM 2171 1980054 - 1980037 - f 93 -12.7 -4.12397 | opp_overlap 1980037 1980031, overlap 1980031 TGATATAACTACAAA CGCAGCC TCAT GGCTGCG TTTTTATTTTCAGCC TERM 2172 1980094 - 1980075 - f 89 -12.2 -3.57263 | opp_overlap 1980075 ATTTTCAGCCCTAAA CCACCTAC TTCA GTAGGTGG TTATCATCAATGAGG TERM 2173 1980075 - 1980094 + F 86 -12.2 -3.4252 | opp_overlap 1980075 ATTTTCAGCCCTAAA CCACCTAC TTCA GTAGGTGG TTATCATCAATGAGG TERM 2174 1980386 - 1980400 + F 79 -10 -3.54488 | opp_overlap 1980380 1980385 1980386, overlap 1980385 AGCACGATAGGAAAG CTCCCT TCT AGGGAG TCTTATTTGCAACAG TERM 2175 1980400 - 1980386 - f 73 -10 -2.91668 | opp_overlap 1980386 1980385, overlap 1980380 1980385 AGCACGATAGGAAAG CTCCCT TCT AGGGAG TCTTATTTGCAACAG TERM 2176 1980424 - 1980445 + F 82 -8.7 -4.15998 | opp_overlap 1980415 1980424 1980425, overlap 1980425 1980435 GCAACAGATAGCAAA GCCACCTTC TTCA GAAGGTGGA TTCTTTACTTTCAGT TERM 2177 1980445 - 1980424 - f 77 -8.7 -3.93383 | opp_overlap 1980424 1980425 1980435, overlap 1980415 1980425 GCAACAGATAGCAAA GCCACCTTC TTCA GAAGGTGGA TTCTTTACTTTCAGT TERM 2178 1980444 - 1980425 - f 82 -12.2 -2.95307 | opp_overlap 1980425 1980424 1980435, overlap 1980415 1980424 CAACAGATAGCAAAG CCACCTTC TTCA GAAGGTGG ATTCTTTACTTTCAG TERM 2179 1980425 - 1980444 + F 82 -12.2 -3.08514 | opp_overlap 1980415 1980424 1980425, overlap 1980424 1980435 CAACAGATAGCAAAG CCACCTTC TTCA GAAGGTGG ATTCTTTACTTTCAG Shal_1651 1980620 - 1980928 + | hypothetical protein TERM 2180 1981399 - 1981413 + G 71 -3.4 -4.86133 | overlap 1981400 1981409 TGCGCGTGATGGATG AGGGCG GCG TGCCCA TTTTTGGTCTCTATC Shal_1652 1981125 - 1982930 + | arylsulfotransferase TERM 2181 1982980 - 1982996 + T 100 -12.3 -5.76633 | opp_overlap 1982980 GATCAACCAAAAAAA TAGCGCC CTA GGCGCTA TTTTTTTATCTGTCG TERM 2182 1982996 - 1982980 - T 100 -12.3 -5.65513 | opp_overlap 1982980 GATCAACCAAAAAAA TAGCGCC CTA GGCGCTA TTTTTTTATCTGTCG Shal_1653 1983830 - 1983021 - | tryptophan synthase subunit alpha TERM 2183 1983604 - 1983624 + g 72 -9 -3.61268 | gap 1 TGAGATGGCGTGGTG CCTGCG-GC TAAT GCGCGCAGG TTTGCACCTTGAATA Shal_1654 1985082 - 1983823 - | tryptophan synthase subunit beta TERM 2184 1983879 - 1983903 + g 75 -2.8 -5.1356 | GATTGTCAGCTTTTT GTTGCTCAAC TTTTT GTTGCTCAAC TTTTTGTTGCTCAAG Shal_1655 1986626 - 1985187 - | bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase Shal_1656 1987704 - 1986628 - | anthranilate phosphoribosyltransferase Shal_1657 1988320 - 1987706 - | anthranilate synthase component II Shal_1658 1989909 - 1988317 - | anthranilate synthase component I TERM 2185 1988888 - 1988915 + g 73 -10.6 -3.07222 | overlap 1988892 CGTTTACGTGTTCCG GCAATCGGGTAG ATCT CAACCTGATTGC TCTTCGCCTCATACT TERM 2186 1990021 - 1990053 + H 100 -20.8 -3.19522 | opp_overlap 1990021 1990024 1990028, overlap 1990024 1990028 ATTATCGCTTAGATA CAAGAAAGCCCGCA GTGTA TGCGGGCTTTCTTG TTGAATCTTGACTCA TERM 2187 1990053 - 1990021 - H 100 -20.8 -2.8805 | opp_overlap 1990021 1990024 1990028, overlap 1990024 1990028 ATTATCGCTTAGATA CAAGAAAGCCCGCA GTGTA TGCGGGCTTTCTTG TTGAATCTTGACTCA TERM 2188 1990024 - 1990050 + H 100 -16.7 -3.7347 | opp_overlap 1990021 1990024 1990028, overlap 1990021 1990028 ATCGCTTAGATACAA GAAAGCCCGCA GTGTA TGCGGGCTTTC TTGTTGAATCTTGAC TERM 2189 1990050 - 1990024 - H 100 -16.7 -3.58905 | opp_overlap 1990024 1990021 1990028, overlap 1990021 1990028 ATCGCTTAGATACAA GAAAGCCCGCA GTGTA TGCGGGCTTTC TTGTTGAATCTTGAC TERM 2190 1990028 - 1990046 + H 95 -11.7 -4.47456 | opp_overlap 1990024 1990021 1990028, overlap 1990024 1990021 CTTAGATACAAGAAA GCCCGCA GTGTA TGCGGGC TTTCTTGTTGAATCT TERM 2191 1990046 - 1990028 - H 95 -11.7 -4.42974 | opp_overlap 1990028 1990024 1990021, overlap 1990024 1990021 CTTAGATACAAGAAA GCCCGCA GTGTA TGCGGGC TTTCTTGTTGAATCT Shal_1659 1990607 - 1991341 + | hypothetical protein TERM 2192 1991519 - 1991535 + G 74 -5.8 -4.64952 | gap 1, opp_overlap 1991504 CCGTGGCGAACTGGC GCC-GCG TTGC CGCTGGC TTTGTTTATGTCATT Shal_1660 1991398 - 1992183 + | hypothetical protein Shal_1661 1992173 - 1992523 + | putative nitrogen regulatory protein P-II Shal_1662 1992520 - 1992927 + | signal-transduction protein TERM 2193 1992940 - 1992970 + F 70 -9.1 -3.23538 | gap 1, opp_overlap 1992939 1992942, overlap 1992942 TAGCCTTTTGAAAAT GA-GCGCAGAGTTA GCAA TAACTCGGCGCCTC TTACTACTAAGTTGT TERM 2194 1992942 - 1992967 + F 81 -11.9 -2.50195 | opp_overlap 1992939 1992942, overlap 1992940 GCCTTTTGAAAATGA GCGCAGAGTTA GCAA TAACTCGGCGC CTCTTACTACTAAGT TERM 2195 1992967 - 1992942 - f 82 -11.9 -3.08032 | opp_overlap 1992942 1992940, overlap 1992939 GCCTTTTGAAAATGA GCGCAGAGTTA GCAA TAACTCGGCGC CTCTTACTACTAAGT Shal_1663 1993092 - 1993901 + | regulatory protein RecX Shal_1664 1994518 - 1993934 - | hypothetical protein Shal_1665 1994903 - 1995454 + | PEBP family protein TERM 2196 1995534 - 1995505 - T 83 -12.3 -2.59569 | opp_overlap 1995510 1995531 1995532 1995533, overlap 1995510 GGGTTAAATTAATAT GAAAAGGCAGCAT ATGA ATGCTGCCTTTTG CTTAAAGCAGGTTTT TERM 2197 1995529 - 1995510 - T 95 -12.2 -4.47307 | opp_overlap 1995510, overlap 1995505 AAATTAATATGAAAA GGCAGCAT ATGA ATGCTGCC TTTTGCTTAAAGCAG TERM 2198 1995510 - 1995529 + T 95 -12.2 -4.4078 | opp_overlap 1995505 1995510 AAATTAATATGAAAA GGCAGCAT ATGA ATGCTGCC TTTTGCTTAAAGCAG TERM 2199 1995547 - 1995560 + T 83 -5.3 -5.24129 | overlap 1995541 TTGCTTAAAGCAGGT TTTGC TTAT GCAAA TTTTTTATCGAGGAA Shal_1666 1995908 - 1995552 - | glutaredoxin Shal_1667 1996641 - 1995997 - | peptidase S51 dipeptidase E TERM 2200 1996782 - 1996803 + r 79 -10.2 -3.56959 | opp_overlap 1996782 TTTTAAGAATAAAAA GGCACACT AACATA AGTGTGCC TTCTGTGGCTTGTGT TERM 2201 1996803 - 1996782 - R 100 -10.2 -5.29445 | opp_overlap 1996782 TTTTAAGAATAAAAA GGCACACT AACATA AGTGTGCC TTCTGTGGCTTGTGT Shal_1668 1999950 - 1996837 - | hypothetical protein TERM 2202 1998110 - 1998120 + g 74 -8.2 -3.93262 | overlap 1998096 1998115 TTAGTCGTCGCGCTG GCGG TGA CCGC TTTGGTCTCTTGACC TERM 2203 1998123 - 1998136 + g 73 -2.3 -5.186 | overlap 1998115 1998124 TGGCGGTGACCGCTT TGGTC TCTT GACCC TTTTTGTCTGTTTTG Shal_1669 2000122 - 2001132 + | ferredoxin Shal_1670 2001259 - 2001966 + | hypothetical protein TERM 2204 2001996 - 2002011 + F 100 -10.4 -5.47821 | AAAGAGTTGGAATGG GGGAGC TTAG GCTCCC TTTTTTTGGGTGAAT Shal_1671 2002127 - 2002477 + | glyoxalase/bleomycin resistance protein/dioxygenase Shal_1672 2002518 - 2002862 + | 5-carboxymethyl-2-hydroxymuconate isomerase TERM 2205 2002968 - 2002947 - T 100 -13.1 -4.67038 | opp_overlap 2002944 2002947 2002949 TTTCGAAAACGAAAA TAGCCACTC AAAT GAGTGGCTA TAGTATATTAAACAG TERM 2206 2002947 - 2002968 + T 90 -13.1 -2.7535 | opp_overlap 2002947, overlap 2002944 2002949 TTTCGAAAACGAAAA TAGCCACTC AAAT GAGTGGCTA TAGTATATTAAACAG TERM 2207 2002949 - 2002966 + T 81 -11.3 -2.92175 | opp_overlap 2002947, overlap 2002947 2002944 TCGAAAACGAAAATA GCCACTC AAAT GAGTGGC TATAGTATATTAAAC Shal_1673 2004661 - 2002997 - | asparagine synthetase B TERM 2208 2003776 - 2003804 + g 74 -3.7 -5.0133 | overlap 2003791 TAAAGGTGATTTCGT GATGGATAGTGCC AAT GGCATCAGCCACC TTTTTTGCGGCAATC Shal_1674 2006860 - 2005202 - | peptidase M28 Shal_1675 2007899 - 2007153 - | UMP phosphatase TERM 2209 2008334 - 2008351 + H 82 -7.7 -4.63172 | GTCATTCTATTCATG CTCGGCT AATC AGCTGAG TTTTCTCCTTTCATA TERM 2210 2009704 - 2009674 - g 73 -7.8 -4.07515 | opp_overlap 2009682 AAACGATAATAAGAA TTTACAAAGCTC TAATCGT GAGCTTTATAAA CAGTCCAACCTCGAC Shal_1676 2008400 - 2010241 + | diguanylate cyclase TERM 2211 2011419 - 2011404 - g 73 -7.5 -4.09685 | opp_overlap 2011404 2011417 GTCGACTTTGGAAAA CCGCC TTTATT GGCGG TGATTATCGTTGGTT Shal_1677 2010377 - 2011915 + | hypothetical protein TERM 2212 2012046 - 2012012 - T 79 -6.6 -4.62471 | gap 1, opp_overlap 2012017, overlap 2012017 CTTAACGCCTAAAAA CTAAACCCCAAGTTG TAGTGT CAACTTGGGGTT-AT TTTCAAGGCGTATGT TERM 2213 2012042 - 2012017 - T 100 -13.4 -4.32046 | opp_overlap 2012017, overlap 2012012 CGCCTAAAAACTAAA CCCCAAGTTG TAGTGT CAACTTGGGG TTATTTTCAAGGCGT TERM 2214 2012017 - 2012042 + T 100 -13.4 -4.17316 | opp_overlap 2012017 2012012 CGCCTAAAAACTAAA CCCCAAGTTG TAGTGT CAACTTGGGG TTATTTTCAAGGCGT Shal_1678 2013225 - 2012131 - | voltage-gated potassium channel TERM 2215 2013989 - 2013966 - R 100 -15.4 -3.68445 | opp_overlap 2013970, overlap 2013970 AAAAATCTGGAACAA GAAAGGCACC CATA GGTGCCTTTC TTACGAAGCTACATT TERM 2216 2013970 - 2013985 + r 89 -10.4 -4.1552 | opp_overlap 2013970 2013966 ATCTGGAACAAGAAA GGCACC CATA GGTGCC TTTCTTACGAAGCTA TERM 2217 2013985 - 2013970 - R 90 -10.4 -4.45068 | opp_overlap 2013970, overlap 2013966 ATCTGGAACAAGAAA GGCACC CATA GGTGCC TTTCTTACGAAGCTA Shal_1679 2014661 - 2014017 - | phosphoribosylglycinamide formyltransferase TERM 2218 2014397 - 2014419 + g 73 -10.6 -3.11208 | opp_overlap 2014396 2014401 2014403, overlap 2014395 2014394 2014401 TACGCATAAAGCCAG CCAACACGAT AAG ATCGGGTTGG TACTTTTCAATCGCA Shal_1680 2015701 - 2014661 - | phosphoribosylaminoimidazole synthetase TERM 2219 2015807 - 2015784 - H 72 -8.3 -3.55444 | opp_overlap 2015773 TGGGTAGCGTCGAAA GCTAAGTTT TTCAAT AAACTTAGC GACAGAGCTCACGAT Shal_1681 2015923 - 2016549 + | uracil phosphoribosyltransferase TERM 2220 2016594 - 2016579 - T 100 -10.4 -5.44119 | opp_overlap 2016579 CGTATTGTAAAAAAA GGAGCC AAAT GGCTCC TTTTTTTTGTTTTCA TERM 2221 2016579 - 2016594 + T 100 -10.4 -6.34616 | opp_overlap 2016579 CGTATTGTAAAAAAA GGAGCC AAAT GGCTCC TTTTTTTTGTTTTCA Shal_1682 2017980 - 2016661 - | Na+/H+ antiporter NhaC Shal_1683 2018292 - 2018897 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 2222 2018955 - 2018925 - T 79 -11.3 -2.71712 | opp_overlap 2018925 2018932, overlap 2018932 TCTTTGTTGTTAAAG TAAAAAAGCTGCG TATAT CGCAGCTTTTTTG TTTGTTCCGTATGTA TERM 2223 2018925 - 2018955 + T 100 -13.5 -4.24285 | opp_overlap 2018925 2018932, overlap 2018932 TCTTTGTTGTTAAAG TAAAAAAGCTGCG TATAT CGCAGCTTTTTTG TTTGTTCCGTATGTA TERM 2224 2018948 - 2018932 - T 100 -9.4 -5.37593 | opp_overlap 2018925 2018932, overlap 2018925 TGTTAAAGTAAAAAA GCTGCG TATAT CGCAGC TTTTTTGTTTGTTCC TERM 2225 2018932 - 2018948 + T 100 -9.4 -5.80003 | opp_overlap 2018932 2018925, overlap 2018925 TGTTAAAGTAAAAAA GCTGCG TATAT CGCAGC TTTTTTGTTTGTTCC TERM 2226 2019053 - 2019029 - T 100 -5.7 -5.76949 | opp_overlap 2019029 TACGGCTAAAAAAAA GACGAACATAA ATA CTCTGTTCGCC ATTTTAATCGCTTTG Shal_1684 2019811 - 2019116 - | ribonuclease T TERM 2227 2019470 - 2019496 + g 75 -2.8 -5.10077 | opp_overlap 2019468 AGCAACAATAATACT GCGATGACAGCC TGC GGCTTTTTGCGC TTTTTTAACCTCTTT TERM 2228 2020212 - 2020234 + G 70 -10.5 -2.50074 | opp_overlap 2020211 2020208, overlap 2020211 2020209 2020214 GGCTAAATTAATGAG CATGGCGCC CGCTT GGCGCCCTG GTATATTGTCGAAAG Shal_1685 2019952 - 2020821 + | OmpA/MotB domain-containing protein TERM 2229 2020843 - 2020862 + F 85 -7.1 -5.00616 | opp_overlap 2020843 2020841 CGACGCTTGACAATA GCCTAGC TTAATC GCTGGGC TTTTTTACGGACAAA TERM 2230 2020945 - 2020923 - f 100 -16.4 -6.10295 | TCAAGATAAAAAAAA GCTCGCTTAC ATG GTAAGCGAGC CGCAAAAATAAATCA TERM 2231 2021035 - 2021014 - f 72 -8.7 -3.5361 | opp_overlap 2021014, overlap 2021002 GAACCAGGGATATAA CTTCCGTGG ATAA CCACTGAAG TTTAAGAGTTCTTTG TERM 2232 2021014 - 2021035 + F 73 -8.7 -3.6512 | opp_overlap 2021002 2021014 GAACCAGGGATATAA CTTCCGTGG ATAA CCACTGAAG TTTAAGAGTTCTTTG TERM 2233 2021200 - 2021188 - f 70 -5.5 -4.36914 | GGTTTGCTGACAAAA GATGC TAA GCACC CTAATATTGCGGGGT Shal_1686 2021471 - 2023627 + | prolyl oligopeptidase TERM 2234 2023667 - 2023652 - f 90 -9 -4.88067 | opp_overlap 2023652 AGTTAGGGATAAAAA GGAAGC TTCG GCTTCC TTTTTTTATGGACAA TERM 2235 2023652 - 2023667 + F 100 -9 -5.60993 | opp_overlap 2023652 AGTTAGGGATAAAAA GGAAGC TTCG GCTTCC TTTTTTTATGGACAA Shal_1687 2023861 - 2024259 + | Pol-Pal system-associated acyl-CoA thioesterase Shal_1688 2024249 - 2024938 + | Tol-Pal system TolQ Shal_1689 2024938 - 2025375 + | biopolymer transport TolR TERM 2236 2025735 - 2025720 - g 76 -4.6 -5.00138 | overlap 2025724 GATTGAAACTAAAAA TGCAGC TGAC GCAGCA AAAGCGGCGCAGTTA Shal_1690 2025376 - 2026311 + | Tol-Pal system TolA Shal_1691 2026321 - 2027643 + | beta-propeller repeat-containing to-pal system protein TolB Shal_1692 2027668 - 2028207 + | peptidoglycan-associated lipoprotein TERM 2237 2028613 - 2028593 - g 82 -11.1 -3.53444 | opp_overlap 2028590 2028593 CGAGTCTTGGTGAAA CGGCTAGCT ATG AGCAAGCCG TAAATTTGGTGCTGA TERM 2238 2028593 - 2028613 + G 73 -11.1 -2.68775 | opp_overlap 2028593, overlap 2028590 CGAGTCTTGGTGAAA CGGCTAGCT ATG AGCAAGCCG TAAATTTGGTGCTGA TERM 2239 2028888 - 2028854 - g 73 -2.2 -5.26316 | overlap 2028856 TGATCGCAGAAAAAA CAGGTGATAAGGCT AAAGCAA AGGCTTATTACCTA AAAGTTACTCAGGAA Shal_1693 2028232 - 2028957 + | Tol-Pal system YbgF TERM 2240 2028991 - 2028977 - f 78 -7.2 -4.431 | opp_overlap 2028977 GATTTATTCAGAAAA CAATCT CTT AGATTG TTTTTCAGGCAAACG TERM 2241 2028977 - 2028991 + F 81 -7.2 -4.56597 | opp_overlap 2028977 GATTTATTCAGAAAA CAATCT CTT AGATTG TTTTTCAGGCAAACG TERM 2242 2029060 - 2029091 + F 75 -10.2 -3.02511 | gap 1, opp_overlap 2029058, overlap 2029071 AAAAGGTATTATAGG CGCCCTCAGAGCGAC ACA GTCG-TTTGAGGGCA TCTTAACCGAGTAAG TERM 2243 2031063 - 2031073 + F 78 -2.6 -5.48213 | CCATGTTGATAGCTG TAAT GTC ATTA TTTTTATTTTCAATA Shal_1694 2031280 - 2032440 + | porin TERM 2244 2032483 - 2032456 - T 88 -11.4 -3.78409 | opp_overlap 2032462, overlap 2032462 TTAATCTAACGCAAA TAAAAAGGAGGC CTTG GCCTCCTTTTTT ATAATGGACTGAGTA TERM 2245 2032477 - 2032462 - T 100 -10.4 -5.33026 | opp_overlap 2032462, overlap 2032456 TAACGCAAATAAAAA GGAGGC CTTG GCCTCC TTTTTTATAATGGAC TERM 2246 2032462 - 2032477 + T 100 -10.4 -5.31275 | opp_overlap 2032462 2032456 TAACGCAAATAAAAA GGAGGC CTTG GCCTCC TTTTTTATAATGGAC Shal_1695 2032771 - 2032505 - | glutaredoxin 1 Shal_1696 2034610 - 2032868 - | type III restriction protein res subunit TERM 2247 2033560 - 2033576 + g 73 -2.2 -5.1383 | opp_overlap 2033560 CTGCATAATCAATGA CAAGAC ACTCA GCCTTG TTTTTATCTATTCTT TERM 2248 2033930 - 2033941 + g 70 -2.2 -4.99056 | overlap 2033923 ACAATGGTTGAGAAT GGAG TTCA CTTC TTTTTCATTGTATTC TERM 2249 2034750 - 2034734 - R 100 -13.7 -5.63504 | overlap 2034722 AATGGGACAAAAAAA GCCCCTC TGT GAGGGGC TAGGGAGTCAAACTG Shal_1697 2036744 - 2034792 - | acetyl-CoA synthetase TERM 2250 2038161 - 2038179 + G 72 -8.8 -3.64755 | TCGTTTGGCGCTTTT GCGCAGCT TGC ACCTGCGC TTATTGGCGGTATGT Shal_1698 2036919 - 2040347 + | PAS/PAC sensor hybrid histidine kinase TERM 2251 2040390 - 2040365 - T 73 -8.3 -3.74693 | opp_overlap 2040365 2040369, overlap 2040369 GCTTATTTTATCAAA CAAAGGTGCGC AATT ACGTACCTTTG TTTATTCACAACTCG TERM 2252 2040365 - 2040390 + T 89 -9.8 -4.16016 | opp_overlap 2040365 2040369, overlap 2040369 GCTTATTTTATCAAA CAAAGGTGCG CAATTA CGTACCTTTG TTTATTCACAACTCG TERM 2253 2040369 - 2040386 + T 74 -4.8 -4.67607 | opp_overlap 2040369 2040365, overlap 2040365 ATTTTATCAAACAAA GGTGCG CAATTA CGTACC TTTGTTTATTCACAA Shal_1699 2040833 - 2040501 - | hypothetical protein Shal_1700 2041164 - 2042453 + | FAD dependent oxidoreductase TERM 2254 2042534 - 2042510 - T 87 -5 -5.35721 | gap 1, opp_overlap 2042510, overlap 2042496 AGAGAATAATAAAAA TCCGCT-TCGA TTAC TCGTTAGCGGA ATTTTTATTAGTCGC Shal_1701 2043233 - 2042574 - | two component LuxR family transcriptional regulator TERM 2255 2043444 - 2043432 - R 76 -3.3 -5.20216 | opp_overlap 2043432, overlap 2043419 CACAGGACCAAAAAA CAGGC CCT GACTG AGTTTCTTTCTGCCT Shal_1702 2043884 - 2043462 - | thioesterase superfamily protein TERM 2256 2044082 - 2044116 + r 79 -9.4 -3.76125 | opp_overlap 2044087, overlap 2044087 TAAAAAGTGTAATAA AAAAACGTACCGACTT AGT GAGTGGGTACGTTTTC TTTAAGTTAAGCTAA TERM 2257 2044111 - 2044087 - R 100 -8.6 -5.80364 | opp_overlap 2044082 2044087 AGTGTAATAAAAAAA CGTACCGACT TAGTG AGTGGGTACG TTTTCTTTAAGTTAA TERM 2258 2044087 - 2044111 + r 90 -9.3 -4.94058 | opp_overlap 2044087, overlap 2044082 AGTGTAATAAAAAAA CGTACCGACTT AGT GAGTGGGTACG TTTTCTTTAAGTTAA Shal_1703 2045215 - 2044154 - | phospho-2-dehydro-3-deoxyheptonate aldolase TERM 2259 2045349 - 2045377 + r 100 -14.9 -4.13014 | opp_overlap 2045354, overlap 2045354 ATTATTTGATGTTAA TTAAAGGCTTTTA TTC TAAAAGCCTTTAA TTTTGGCCCTATAAA TERM 2260 2045354 - 2045372 + r 89 -10.4 -4.20136 | opp_overlap 2045354, overlap 2045349 TTGATGTTAATTAAA GGCTTTTA TTC TAAAAGCC TTTAATTTTGGCCCT TERM 2261 2045372 - 2045354 - R 84 -10.4 -3.91911 | opp_overlap 2045349 2045354 TTGATGTTAATTAAA GGCTTTTA TTC TAAAAGCC TTTAATTTTGGCCCT Shal_1704 2046217 - 2045405 - | hypothetical protein TERM 2262 2046800 - 2046825 + G 70 -4.8 -4.49556 | TATGAAGCCGTGTTA GAAGCAACTA AGCATG TATTTGCTTC TTTGTTTAATGACCG TERM 2263 2047244 - 2047232 - g 71 -7.7 -3.8917 | GCTGAAGTACAAGAA CTTGC TAA GCAAG CAATGACTATCGAGA TERM 2264 2048151 - 2048140 - g 78 -5.8 -4.75472 | overlap 2048135 GCCAGAGGAAGAAAA CCCA ATGT TGGG CTTCCGCGGTGCGAG Shal_1705 2046344 - 2048713 + | phosphoenolpyruvate synthase TERM 2265 2048747 - 2048769 + F 82 -7.9 -4.63486 | opp_overlap 2048746 2048747 ATAGTCTAAATGAAG TGTTAAATC TGTGC GATTTAACA TTTTGTTAAAAACAT TERM 2266 2048782 - 2048816 + F 91 -11.7 -3.96148 | gap 1, opp_overlap 2048785 2048792, overlap 2048792 ACATTTTGTTAAAAA CATGAAAAAAGCCGCT ATTT AGCGGCTTTTTTT-TG TTTATAATGAGCCCA TERM 2267 2048814 - 2048785 - f 84 -12.3 -2.93708 | opp_overlap 2048782 2048792, overlap 2048792 TTTTGTTAAAAACAT GAAAAAAGCCGCT ATTT AGCGGCTTTTTTT TGTTTATAATGAGCC TERM 2268 2048792 - 2048807 + F 100 -10.4 -6.28967 | opp_overlap 2048785 2048792, overlap 2048782 AAAAACATGAAAAAA GCCGCT ATTT AGCGGC TTTTTTTTGTTTATA TERM 2269 2048807 - 2048792 - f 100 -10.4 -5.38348 | opp_overlap 2048792 2048782, overlap 2048785 AAAAACATGAAAAAA GCCGCT ATTT AGCGGC TTTTTTTTGTTTATA TERM 2270 2049097 - 2049072 - g 79 -9.9 -3.70863 | gap 1, opp_overlap 2049070 CAGATAGCACTGAAA TTGGCAAAC-CA AGA TGAGTTTGCCAA GGTGGTCTTTAGTGC TERM 2271 2050834 - 2050821 - g 70 -5.3 -4.38876 | opp_overlap 2050832 TTAAAAATAGATAAA GAGTA CGAC TACTC TCATGAAGTCATGGA Shal_1706 2048865 - 2051915 + | D-lactate dehydrogenase (cytochrome) TERM 2272 2051926 - 2051956 + F 100 -18.6 -4.12188 | opp_overlap 2051934, overlap 2051934 TTTAATTAGCACCCA GTAAAAAACTAGCC TCT GGCTAGTTTTTTAC TTTTAGGGCTAGTCG TERM 2273 2051934 - 2051948 + F 100 -10 -5.46698 | opp_overlap 2051934, overlap 2051926 GCACCCAGTAAAAAA CTAGCC TCT GGCTAG TTTTTTACTTTTAGG TERM 2274 2051948 - 2051934 - f 93 -10 -5.1675 | opp_overlap 2051934 2051926 GCACCCAGTAAAAAA CTAGCC TCT GGCTAG TTTTTTACTTTTAGG Shal_1707 2052072 - 2052515 + | hypothetical protein Shal_1708 2052671 - 2053084 + | MarR family transcriptional regulator Shal_1709 2053448 - 2053858 + | hypothetical protein Shal_1710 2054262 - 2053918 - | hypothetical protein TERM 2275 2054417 - 2054395 - R 95 -9.2 -5.40072 | opp_overlap 2054395 TTGTGGGCAAAAAAA TACCCAGC AATATAA GCTGGGTA TTTTTTATGGTTAGC TERM 2276 2054395 - 2054417 + r 95 -9.2 -5.37345 | opp_overlap 2054395 TTGTGGGCAAAAAAA TACCCAGC AATATAA GCTGGGTA TTTTTTATGGTTAGC Shal_1711 2055468 - 2054437 - | Glu/Leu/Phe/Val dehydrogenase dimerisation region TERM 2277 2054690 - 2054714 + g 79 -9.3 -4.19238 | opp_overlap 2054688, overlap 2054681 CGTACTTCAGCAAGC TGGTTGTTGGC ACA GCCAGCAACAA TTTTGGCCTTAAGCA Shal_1712 2055733 - 2056158 + | hypothetical protein TERM 2278 2056175 - 2056207 + T 81 -12.2 -2.84803 | opp_overlap 2056183, overlap 2056183 GTATAACCTTAGAAA ACAAAAAAGGCATC ATTTC GATGCCTTTTTTGA TCGTTAGTGTCTTAC TERM 2279 2056199 - 2056183 - T 100 -8.7 -5.86976 | opp_overlap 2056175 2056183 TTAGAAAACAAAAAA GGCATCA TTT CGATGCC TTTTTTGATCGTTAG TERM 2280 2056183 - 2056199 + T 91 -8 -5.2189 | opp_overlap 2056183, overlap 2056175 TTAGAAAACAAAAAA GGCATC ATTTC GATGCC TTTTTTGATCGTTAG TERM 2281 2056297 - 2056268 - T 100 -14.5 -4.8667 | opp_overlap 2056268 2056271 GACAGCGGATAAAAA TAAGGCGTTAAGC CTAA ACTTAACGCCTTA TTTAAACCTTTAATA TERM 2282 2056268 - 2056297 + T 95 -13.8 -3.64682 | opp_overlap 2056268, overlap 2056271 GACAGCGGATAAAAA TAAGGCGTTAAG CCTAAA CTTAACGCCTTA TTTAAACCTTTAATA TERM 2283 2056271 - 2056294 + T 86 -11.1 -3.95071 | opp_overlap 2056268, overlap 2056268 AGCGGATAAAAATAA GGCGTTAAG CCTAAA CTTAACGCC TTATTTAAACCTTTA Shal_1713 2057719 - 2056349 - | adenylosuccinate lyase Shal_1714 2058368 - 2057751 - | hypothetical protein TERM 2284 2057925 - 2057910 - G 77 -9 -3.86897 | GGTACGTTTTAGAAA CTCTGG GTTG CCAGAG ATCTGGAGCTTGGGG Shal_1715 2059487 - 2058372 - | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Shal_1716 2060219 - 2059767 - | NUDIX hydrolase TERM 2285 2059995 - 2059977 - G 91 -11 -4.20516 | opp_overlap 2059976 GGTGTAGCGAACAAA TGCCAGCG ACT CACTGGCA GTAAATTGATAGATC Shal_1717 2060961 - 2060242 - | pseudouridine synthase TERM 2286 2060865 - 2060887 + g 71 -9.9 -3.14132 | opp_overlap 2060865 TTGGGGTCTTAGCAA CGGTAGCAG GCTTG TTGCTACCG TTCCTAGCAAAGCCA TERM 2287 2061644 - 2061632 - g 80 -6.3 -4.89339 | overlap 2061636 AATGACGTAGAAAAA GAGAT CCA ATCTC GTTACGACAAGATTA TERM 2288 2061759 - 2061745 - g 71 -3.5 -4.82901 | GTTTGCTCAGAAAAA CCCAC ATTCG ATGGG TAAATGGTTAGCCGA Shal_1718 2061266 - 2063488 + | isocitrate dehydrogenase, NADP-dependent TERM 2289 2063516 - 2063535 + T 100 -13.6 -5.63517 | opp_overlap 2063516 ATGTTTAAGCACAAA GGCCTGCA TCAA TGCAGGCC TTTTTTATTTGCAAA TERM 2290 2063535 - 2063516 - T 100 -13.6 -4.05714 | opp_overlap 2063516 ATGTTTAAGCACAAA GGCCTGCA TCAA TGCAGGCC TTTTTTATTTGCAAA TERM 2291 2063601 - 2063580 - T 100 -13.1 -5.4833 | opp_overlap 2063580 TTAGGCAATAAAAAA GCAGAGTAG TCAG CTACTCTGC TTTTTTGTCTCTATC TERM 2292 2063580 - 2063601 + T 100 -13.1 -5.4492 | opp_overlap 2063580 TTAGGCAATAAAAAA GCAGAGTAG TCAG CTACTCTGC TTTTTTGTCTCTATC Shal_1719 2063892 - 2063686 - | cold-shock DNA-binding domain-containing protein TERM 2293 2063945 - 2063961 + H 75 -10.1 -3.14344 | opp_overlap 2063942 TAGTAAAACTTATCA GCGGGGA AAC TCCTCGC TTAATGAACAGAATG Shal_1720 2064132 - 2064440 + | ATP-dependent Clp protease adaptor protein ClpS TERM 2294 2065150 - 2065139 - g 71 -7.2 -4.07568 | opp_overlap 2065144 CGGGTGTGGGTAAAA CGGC AATA GCCG AAGGGCTAGCTTATC TERM 2295 2065744 - 2065734 - g 73 -4.6 -4.82855 | GAGCAAACGTAAAAA GACC ATT GGCC AATCAGAGATCGAAG Shal_1721 2064478 - 2066736 + | ATP-dependent Clp protease, ATP-binding subunit clpA TERM 2296 2066853 - 2066827 - T 100 -16 -3.5365 | opp_overlap 2066833, overlap 2066833 GTAAATTTCAGACAA CAAAAAGCCGGC ATT GCCGGCTTTTTA ATATATACGTTACAT TERM 2297 2066847 - 2066833 - T 100 -12.8 -5.24796 | opp_overlap 2066833, overlap 2066827 TTCAGACAACAAAAA GCCGGC ATT GCCGGC TTTTTAATATATACG TERM 2298 2066833 - 2066847 + T 100 -12.8 -4.84527 | opp_overlap 2066833 2066827 TTCAGACAACAAAAA GCCGGC ATT GCCGGC TTTTTAATATATACG Shal_1722 2067098 - 2066880 - | translation initiation factor IF-1 Shal_1723 2067937 - 2067218 - | arginyl-tRNA-protein transferase Shal_1724 2068637 - 2067927 - | leucyl/phenylalanyl-tRNA--protein transferase TERM 2299 2068190 - 2068175 - G 76 -4.6 -5.05782 | ACTCACCGCAAAAAA CTTGCC CAAT GGCCAG TCCATAAAGTCCACC Shal_1725 2068692 - 2069168 + | 17 kDa surface antigen Shal_1726 2070695 - 2069334 - | GntR family transcriptional regulator TERM 2300 2070215 - 2070244 + g 70 -5.1 -4.53602 | gap 1 AGATCCCCTGTTGAC CACCATGAGTAAAT ACT ATCTGCTCA-GGTG TTTGTTTGATATCAC Shal_1727 2070857 - 2071462 + | lysine exporter protein LysE/YggA Shal_1728 2072245 - 2071553 - | glutathione S-transferase domain-containing protein TERM 2301 2072807 - 2072797 - g 74 -8.2 -3.90112 | opp_overlap 2072797, overlap 2072798 CTCGGCGCAATTAAA CCGC GCA GCGG CGGCTCGTCGTGAGC Shal_1729 2072585 - 2073949 + | putative chaperone TERM 2302 2073984 - 2073961 - f 79 -11 -3.14522 | opp_overlap 2073966, overlap 2073964 2073966 TTAATTGACACTGAA CAATAGCGCG ACTC CGCGCTTTTG GGTTTACAGTGTTTA TERM 2303 2073966 - 2073979 + F 90 -9.5 -4.35926 | opp_overlap 2073966 2073964 2073961 TGACACTGAACAATA GCGCG ACTC CGCGC TTTTGGGTTTACAGT TERM 2304 2073979 - 2073966 - f 75 -9.5 -3.43446 | opp_overlap 2073966, overlap 2073964 2073961 TGACACTGAACAATA GCGCG ACTC CGCGC TTTTGGGTTTACAGT Shal_1730 2074089 - 2074583 + | CreA family protein TERM 2305 2074763 - 2074735 - T 77 -11.1 -2.79302 | opp_overlap 2074740, overlap 2074740 ATGAGTGTCAGCATA TAAAAGGGCGAAT ATG ATCCGCCCTTTTT GCTTTCTGTGTTTTG TERM 2306 2074740 - 2074758 + T 90 -8.8 -5.07011 | opp_overlap 2074740 2074735 TGTCAGCATATAAAA GGGCGAAT ATG ATCCGCCC TTTTTGCTTTCTGTG TERM 2307 2074758 - 2074740 - T 91 -11 -4.57353 | opp_overlap 2074740, overlap 2074735 TGTCAGCATATAAAA GGGCGAAT ATG ATCCGCCC TTTTTGCTTTCTGTG Shal_1731 2075433 - 2074861 - | hypothetical protein TERM 2308 2075533 - 2075551 + r 70 -8.8 -3.28712 | opp_overlap 2075533 AATCAATATAATAAA GCCGACGT TAG AGGTCGGC TTGTGGCGGGAGAGC TERM 2309 2075551 - 2075533 - R 85 -8.8 -4.48583 | opp_overlap 2075533 AATCAATATAATAAA GCCGACGT TAG AGGTCGGC TTGTGGCGGGAGAGC Shal_1732 2076854 - 2075634 - | cystathionine beta-lyase Shal_1733 2079130 - 2076947 - | histidine kinase TERM 2310 2078426 - 2078416 - G 74 -8.2 -3.89346 | opp_overlap 2078415 CGTTTACGTCATAAA CGGC AAA GCCG AGTTTACTGCCGACC Shal_1734 2079992 - 2079300 - | two component transcriptional regulator TERM 2311 2079407 - 2079430 + g 79 -8.2 -4.36127 | opp_overlap 2079410, overlap 2079410 GTTTTACATGGGAAG TAATCGTCGA ATCA TCGACGAATA TTTTCGCTTCTTGCA TERM 2312 2079427 - 2079410 - G 73 -9.9 -3.36785 | opp_overlap 2079407 2079410 TTACATGGGAAGTAA TCGTCGA ATCA TCGACGA ATATTTTCGCTTCTT Shal_1735 2080249 - 2080986 + | OmpA/MotB domain-containing protein TERM 2313 2082221 - 2082233 + G 76 -7.7 -4.36914 | GCAAGGTAGTGAGCC TACGG CAG CCGTA TTTTCTCAACAAGGC Shal_1736 2081112 - 2083664 + | cell wall anchor domain-containing protein Shal_1737 2083657 - 2084331 + | peptidase C60 sortase A and B Shal_1738 2085472 - 2084447 - | diguanylate cyclase TERM 2314 2085773 - 2085746 - R 90 -12.8 -3.66772 | opp_overlap 2085746 2085752, overlap 2085752 CTAAACGCTTAACAA CAAAAAGGCACC GAAA GGGGCCTTTTTG TGTCGTGATAACTTA TERM 2315 2085746 - 2085773 + r 83 -12.8 -2.83641 | opp_overlap 2085746 2085752, overlap 2085752 CTAAACGCTTAACAA CAAAAAGGCACC GAAA GGGGCCTTTTTG TGTCGTGATAACTTA TERM 2316 2085752 - 2085767 + r 83 -6 -5.01497 | opp_overlap 2085752 2085746, overlap 2085746 GCTTAACAACAAAAA GGCACC GAAA GGGGCC TTTTTGTGTCGTGAT TERM 2317 2085767 - 2085752 - R 87 -6 -5.29445 | opp_overlap 2085746 2085752, overlap 2085746 GCTTAACAACAAAAA GGCACC GAAA GGGGCC TTTTTGTGTCGTGAT Shal_1739 2086673 - 2085801 - | hypothetical protein TERM 2318 2086819 - 2086805 - R 73 -8.6 -3.72695 | opp_overlap 2086804 2086805, overlap 2086809 ATTTGTTTGATCAAA TGCAGT TTA ACTGCA GTTAATCAATACGCA TERM 2319 2087098 - 2087081 - R 79 -9.9 -3.75332 | opp_overlap 2087081 AGGCTTTAATTCAAA CGCCTTT AATC AAAGGCG TTAGTTCAAATTTAA TERM 2320 2087081 - 2087098 + r 75 -9.9 -3.3907 | opp_overlap 2087081 AGGCTTTAATTCAAA CGCCTTT AATC AAAGGCG TTAGTTCAAATTTAA Shal_1740 2087506 - 2087135 - | diacylglycerol kinase Shal_1741 2087765 - 2088652 + | DNA ligase TERM 2321 2088779 - 2088758 - T 100 -17.3 -5.02323 | TTACTATAAACAAAA GCTCGGGGC TGTA GCCCCGAGC CTCTAAACTTGACTC Shal_1742 2089501 - 2088845 - | nitroreductase Shal_1743 2089727 - 2090029 + | hypothetical protein TERM 2322 2090330 - 2090313 - f 79 -8.3 -4.02206 | AATGGAAAGATGAAA CGGGCGC CTAA GCGCCAG ATCCCATAATTGTGC TERM 2323 2090929 - 2090913 - f 70 -8.1 -3.70104 | overlap 2090908 AATTATGGAATACAA TGTAGTT GTA AACTACA CATCCCTTCGTTCTA TERM 2324 2091035 - 2091017 - gf 81 -11.8 -2.63715 | opp_overlap 2091005, overlap 2091034 ACCGATGCCATAGTA GCGTCTTT AGA AAAGACGC CAAACCTGACTGCGA Shal_1744 2090990 - 2096740 + | hypothetical protein Shal_1745 2096703 - 2097200 + | hypothetical protein TERM 2325 2097409 - 2097393 - T 71 -3.7 -4.9725 | overlap 2097397 ATGGGCAGATAAAAA CTTAGCT CAA ATCTAAG CTGACAGATACCTTC Shal_1746 2097875 - 2097483 - | hypothetical protein TERM 2326 2098410 - 2098384 - g 100 -3.7 -5.95449 | AAAGAAAAGAAAAAA GCATGGCTTAT AAATA AAAAGCAATGC CGTAAGTTTGCTAGA Shal_1747 2098102 - 2098434 + | hypothetical protein Shal_1748 2098508 - 2098861 + | putative lipoprotein Shal_1749 2099025 - 2099510 + | hypothetical protein TERM 2327 2100066 - 2100050 - g 74 -3.7 -5.04601 | GCGATAAAGCAAAAA CAAATGT AGA ACATTGG GTCAAAACTAAAGAA Shal_1750 2099743 - 2100126 + | hypothetical protein Shal_1751 2100197 - 2100478 + | hypothetical protein Shal_1752 2100547 - 2101638 + | kinase Shal_1753 2101631 - 2103247 + | GTP-binding protein HSR1-related Shal_1754 2103282 - 2104451 + | ankyrin Shal_1755 2104454 - 2105092 + | hypothetical protein TERM 2328 2106904 - 2106884 - g 85 -6.9 -5.07486 | opp_overlap 2106884 TAGGGCCAAGAAAAA CCACTTTTA TGC TAATAGTGG TTTAATTAAGCTATC Shal_1756 2105103 - 2107127 + | hypothetical protein TERM 2329 2107180 - 2107148 - T 85 -11.3 -3.33361 | opp_overlap 2107149 2107150, overlap 2107142 2107150 GACCAATTAGACCAA TAGTCTCTAGCGAGG CTT CCTTGCTAGAGACCT TTTAAAATTACTATG TERM 2330 2107149 - 2107179 + T 100 -14.8 -4.21098 | opp_overlap 2107142 2107148 2107150, overlap 2107150 ACCAATTAGACCAAT AGTCTCTAGCGAGG CTT CCTTGCTAGAGACC TTTTAAAATTACTAT TERM 2331 2107150 - 2107178 + T 100 -18.3 -3.11936 | opp_overlap 2107142 2107148 2107150, overlap 2107149 CCAATTAGACCAATA GTCTCTAGCGAGG CTT CCTTGCTAGAGAC CTTTTAAAATTACTA TERM 2332 2107178 - 2107150 - T 100 -16.1 -3.22858 | opp_overlap 2107150 2107149, overlap 2107142 2107148 CCAATTAGACCAATA GTCTCTAGCGAGG CTT CCTTGCTAGAGAC CTTTTAAAATTACTA Shal_1757 2108426 - 2107557 - | hypothetical protein TERM 2333 2107685 - 2107696 + g 72 -3 -4.91712 | ACCGCTCATACTTGT TAGA AAGG TCTA TTTTTGTGAATTCAA TERM 2334 2108722 - 2108705 - R 100 -12.7 -4.16284 | opp_overlap 2108702 2108705 AGAGTGCCTAAGAAA GCGAGCC TAAT GGCTCGC TAGTTGTTGCTATAA TERM 2335 2108705 - 2108722 + r 84 -12.7 -2.97707 | opp_overlap 2108705, overlap 2108702 AGAGTGCCTAAGAAA GCGAGCC TAAT GGCTCGC TAGTTGTTGCTATAA Shal_1758 2108953 - 2108732 - | hypothetical protein Shal_1760 2109820 - 2109530 - | hypothetical protein Shal_1761 2110054 - 2110515 + | protein tyrosine phosphatase Shal_1762 2110636 - 2112006 + | GTP1/OBG protein TERM 2336 2112051 - 2112023 - T 100 -16.3 -3.5951 | opp_overlap 2112023 2112030, overlap 2112030 AGAGACATTAGACAA TAAAAAAGCACTC GTT GAGTGCTTTTTTA TTTAATGGAATGAGT TERM 2337 2112023 - 2112051 + T 100 -16.3 -3.74872 | opp_overlap 2112023 2112030, overlap 2112030 AGAGACATTAGACAA TAAAAAAGCACTC GTT GAGTGCTTTTTTA TTTAATGGAATGAGT TERM 2338 2112030 - 2112044 + T 100 -10 -5.68438 | opp_overlap 2112023 2112030, overlap 2112023 TTAGACAATAAAAAA GCACTC GTT GAGTGC TTTTTTATTTAATGG TERM 2339 2112044 - 2112030 - T 100 -10 -5.60689 | opp_overlap 2112030 2112023, overlap 2112023 TTAGACAATAAAAAA GCACTC GTT GAGTGC TTTTTTATTTAATGG Shal_1763 2113006 - 2112068 - | ribosomal biogenesis GTPase TERM 2340 2113099 - 2113074 - R 95 -11.9 -4.20918 | opp_overlap 2113080, overlap 2113080 CTTAAGTTTAACAAA CAAAAAGCGCC TTTA GGCGCTTATTG GGCTCTTATTGCGTG TERM 2341 2113093 - 2113080 - R 100 -9.5 -5.47159 | opp_overlap 2113080, overlap 2113074 TTTAACAAACAAAAA GCGCC TTTA GGCGC TTATTGGGCTCTTAT TERM 2342 2113080 - 2113093 + r 79 -9.5 -3.68704 | opp_overlap 2113074 2113080 TTTAACAAACAAAAA GCGCC TTTA GGCGC TTATTGGGCTCTTAT Shal_1764 2113963 - 2113124 - | 2OG-Fe(II) oxygenase TERM 2343 2114521 - 2114509 - g 72 -4.7 -4.57837 | opp_overlap 2114509 ATATTGCTGTAAAAA GTGCG ATG CGCCC TTATATCGCTCGGAA Shal_1765 2114372 - 2115304 + | bifunctional methionine sulfoxide reductase B/A protein TERM 2344 2115319 - 2115347 + T 100 -14.7 -3.54906 | opp_overlap 2115325, overlap 2115325 AAAAGTTGAGCTAAT AAAAAAGACGGGC AAT GCCCGTCTTTTTC GTTTTTATCGCTTAT TERM 2345 2115341 - 2115325 - T 100 -13.7 -5.4833 | opp_overlap 2115319 2115325 TGAGCTAATAAAAAA GACGGGC AAT GCCCGTC TTTTTCGTTTTTATC TERM 2346 2115325 - 2115341 + T 100 -13.7 -5.2197 | opp_overlap 2115325, overlap 2115319 TGAGCTAATAAAAAA GACGGGC AAT GCCCGTC TTTTTCGTTTTTATC Shal_1766 2116948 - 2115389 - | sulphate transporter TERM 2347 2117034 - 2117053 + r 95 -12.2 -4.18018 | opp_overlap 2117034, overlap 2117012 TTTTAAAATAAAAAA GCCATGCT ATAA AGCATGGC TTTTAGGTAAACCGA TERM 2348 2117053 - 2117034 - R 100 -12.2 -5.79595 | opp_overlap 2117012 2117034 TTTTAAAATAAAAAA GCCATGCT ATAA AGCATGGC TTTTAGGTAAACCGA Shal_1767 2120378 - 2117079 - | ribonuclease TERM 2349 2118635 - 2118673 + g 76 -11.9 -2.72344 | opp_overlap 2118662, overlap 2118626 TATCTTGCTTCTTAG GCTCAGTTTTTGGTTCT TCTTT AGAACCAAATAGTGAGC TAATTGCCGCTGCGA Shal_1768 2120948 - 2121907 + | RluA family pseudouridine synthase Shal_1769 2121904 - 2122551 + | HAD family hydrolase Shal_1770 2122833 - 2122585 - | hypothetical protein TERM 2350 2122857 - 2122831 - G 100 -14.4 -3.82499 | opp_overlap 2122834, overlap 2122834 ATCAAATTGATGAAA CAAGGCGCGCCA ATT TGGCGCGGCCTG TTAGGTAATCATGAT TERM 2351 2122834 - 2122855 + r 85 -12.3 -3.11272 | gap 1, opp_overlap 2122834 2122831 AAATTGATGAAACAA GG-CGCGCCA ATT TGGCGCGGCC TGTTAGGTAATCATG TERM 2352 2122854 - 2122834 - R 93 -12.5 -4.03174 | opp_overlap 2122834, overlap 2122831 AAATTGATGAAACAA GGCGCGCCA ATT TGGCGCGGC CTGTTAGGTAATCAT Shal_1771 2123882 - 2123301 - | maf protein Shal_1772 2124857 - 2125381 + | hypothetical protein Shal_1773 2125399 - 2125569 + | 50S ribosomal protein L32 TERM 2353 2125645 - 2125666 + G 90 -14.5 -3.17075 | opp_overlap 2125645 GGTCCCCGCATCACA GTGCCTGCA ACTT TGCAGGCAC TTCGCTTAAACCCCC TERM 2354 2125666 - 2125645 - g 87 -14.5 -2.78384 | opp_overlap 2125645 GGTCCCCGCATCACA GTGCCTGCA ACTT TGCAGGCAC TTCGCTTAAACCCCC TERM 2355 2125797 - 2125774 - g 76 -4.7 -4.90778 | gap 1, opp_overlap 2125777 2125778, overlap 2125778 2125781 CGCATCGAAATAAAA CATA-CGACT GAAGT AGTCGCTATG TCAGATCGTCCTGTT TERM 2356 2126497 - 2126510 + G 74 -3.8 -5.00884 | opp_overlap 2126507, overlap 2126508 AAAAGTCATGGGTGC GCAG ATGAAG CTGC TTTTTTGCAAGCAAT Shal_1774 2125585 - 2126613 + | putative glycerol-3-phosphate acyltransferase PlsX Shal_1775 2126624 - 2127583 + | 3-oxoacyl-(acyl carrier protein) synthase III Shal_1776 2127670 - 2128596 + | malonyl CoA-acyl carrier protein transacylase TERM 2357 2129013 - 2129001 - g 93 -9.1 -4.81685 | opp_overlap 2129000 2129001 ACCAATGATGAAAAA GCGTC ATG GACGC ATTATCAATATTGGC TERM 2358 2129120 - 2129107 - g 70 -5.3 -4.42653 | opp_overlap 2129096 ATTGGATTTACAAAA TCTCT TGCA AGAGA GGTTGCATCTCGCCA Shal_1777 2128606 - 2129352 + | 3-oxoacyl-(acyl-carrier-protein) reductase Shal_1778 2129509 - 2129742 + | acyl carrier protein TERM 2359 2129754 - 2129787 + F 100 -16.9 -3.85817 | opp_overlap 2129760, overlap 2129760 GTAATCTAGAATTCT TGAAAACAGGCGGCA TTAT TGCCGCCTGTTTTTG TTTGTAAAAGCCGCT TERM 2360 2129781 - 2129760 - f 100 -15.9 -4.12198 | opp_overlap 2129754 2129760 TAGAATTCTTGAAAA CAGGCGGCA TTAT TGCCGCCTG TTTTTGTTTGTAAAA TERM 2361 2129760 - 2129781 + F 100 -15.9 -5.38054 | opp_overlap 2129760, overlap 2129754 TAGAATTCTTGAAAA CAGGCGGCA TTAT TGCCGCCTG TTTTTGTTTGTAAAA Shal_1779 2129985 - 2131223 + | Beta-ketoacyl synthase TERM 2362 2131268 - 2131237 - f 78 -11 -3.05463 | opp_overlap 2131238 2131246, overlap 2131246 AGTCTGTTTAGGTAA TCAAAAAAAGCGCC TCAG GGCGCTTTTTTTAT ATCTAGAAGGTTCCC TERM 2363 2131238 - 2131267 + F 83 -12.3 -2.88579 | opp_overlap 2131237 2131246, overlap 2131246 GTCTGTTTAGGTAAT CAAAAAAAGCGCC TCAG GGCGCTTTTTTTA TATCTAGAAGGTTCC TERM 2364 2131246 - 2131259 + F 100 -9.5 -5.76633 | opp_overlap 2131237 2131246, overlap 2131238 AGGTAATCAAAAAAA GCGCC TCAG GGCGC TTTTTTTATATCTAG TERM 2365 2131259 - 2131246 - f 100 -9.5 -5.64006 | opp_overlap 2131246 2131238, overlap 2131237 AGGTAATCAAAAAAA GCGCC TCAG GGCGC TTTTTTTATATCTAG Shal_1780 2131505 - 2131873 + | hypothetical protein Shal_1781 2131939 - 2132430 + | thioesterase superfamily protein TERM 2366 2132465 - 2132482 + F 100 -11.3 -5.4833 | opp_overlap 2132465 TTTTTGTTCATTAAA GCTAGCC CTCG GGCTAGC TTTTTTATTGCCTCA TERM 2367 2132482 - 2132465 - f 88 -11.3 -3.72576 | opp_overlap 2132465 TTTTTGTTCATTAAA GCTAGCC CTCG GGCTAGC TTTTTTATTGCCTCA TERM 2368 2132485 - 2132503 + F 70 -5.4 -4.38744 | overlap 2132486 CCCTCGGGCTAGCTT TTTTATTG CCT CAATAAAG TTGTTTTCTATCACT TERM 2369 2132565 - 2132545 - f 72 -3.3 -5.03145 | GAATGGGGCAAAAAA TATTCCCTA CAA TAGGAGATA AAATGGCTAAGGTTG Shal_1782 2132568 - 2133443 + | 6-phosphogluconate dehydrogenase NAD-binding TERM 2370 2133490 - 2133473 - T 100 -9.9 -5.5604 | opp_overlap 2133473 GTAACCAATAAAAAA GGACCAT TTAT ATGGTCC TTTTTAGTCACACAA TERM 2371 2133473 - 2133490 + T 93 -9.9 -4.72272 | opp_overlap 2133473 GTAACCAATAAAAAA GGACCAT TTAT ATGGTCC TTTTTAGTCACACAA Shal_1783 2134417 - 2133527 - | cytidine deaminase Shal_1784 2135994 - 2134513 - | exonuclease I Shal_1785 2136220 - 2137296 + | integrase family protein Shal_1786 2137326 - 2138135 + | hypothetical protein Shal_1787 2138886 - 2138530 - | hypothetical protein Shal_1788 2139706 - 2138837 - | restriction endonuclease-like protein Shal_1789 2140046 - 2141083 + | hypothetical protein Shal_1790 2142375 - 2141818 - | resolvase domain-containing protein Shal_1791 2142667 - 2143704 + | hypothetical protein Shal_1792 2143701 - 2145425 + | UBA/THIF-type NAD/FAD binding protein Shal_1793 2145413 - 2145886 + | hypothetical protein TERM 2372 2145893 - 2145905 + F 85 -2.7 -5.72207 | CCAATCTAGGATCAT TTTTC AAT GAGAA TTTTTTTAATTTCGA Shal_1794 2145899 - 2146969 + | hypothetical protein Shal_1795 2148377 - 2147640 - | hypothetical protein TERM 2373 2149809 - 2149796 - g 84 -5.3 -5.35721 | ACAGAAGAACAAAAA TTAGC GTTA GCTAA ATCAGGTCTGAGTTG Shal_1796 2149058 - 2149864 + | 23S rRNA methyltransferase A Shal_1797 2150169 - 2150375 + | cold-shock DNA-binding domain-containing protein TERM 2374 2150420 - 2150441 + T 100 -15.9 -5.37593 | opp_overlap 2150422 ACACAGAATTTTGAA GAGCCGTGG TTTA CCACGGCTC TTTTTTCGTTTAAGG TERM 2375 2150439 - 2150422 - T 84 -12.7 -3.07501 | opp_overlap 2150420 ACAGAATTTTGAAGA GCCGTGG TTTA CCACGGC TCTTTTTTCGTTTAA Shal_1798 2151224 - 2150982 - | hypothetical protein TERM 2376 2151327 - 2151311 - R 100 -7.2 -5.626 | opp_overlap 2151311 GAGCCTATAAAAAAA CGGCGC CTAAT GCACCG TTTAATGATATAGCT Shal_1799 2152255 - 2151356 - | ABC transporter related Shal_1800 2153061 - 2152252 - | ABC-2 type transporter Shal_1801 2153848 - 2153201 - | hypothetical protein TERM 2377 2153636 - 2153658 + g 79 -2 -5.52986 | opp_overlap 2153636, overlap 2153626 2153624 2153638 CACTCGGCTACCGAA GCCTGATT GTTCTGA AATCAGTC TTTTTTTAGTGAGGT TERM 2378 2153869 - 2153896 + r 100 -15 -3.72893 | opp_overlap 2153855 2153869 CCTCTTAATAAAAAA GCATGGCTTTGT TATA ACAGAGCCATGC TTTAATGCAAAGGTG TERM 2379 2153896 - 2153869 - R 100 -12.8 -5.4505 | opp_overlap 2153869, overlap 2153855 CCTCTTAATAAAAAA GCATGGCTTTGT TATA ACAGAGCCATGC TTTAATGCAAAGGTG TERM 2380 2153975 - 2154014 + r 91 -9.5 -4.52589 | overlap 2153980 CGTTTAGTTTAGTCT GCTAGGCGGATC-CCATCT GGAG AGATGGTGATCTGCTT-GC TTTTATATAGGCCAC TERM 2381 2153980 - 2154010 + r 90 -11.3 -3.79162 | gap 1, overlap 2153975 AGTTTAGTCTGCTAG GCGGATC-CCATCT GGAG AGATGGTGATCTGC TTGCTTTTATATAGG Shal_1802 2154801 - 2153968 - | hypothetical protein TERM 2382 2156024 - 2156006 - g 70 -8.8 -3.47526 | overlap 2156004 TGAGCAAGCTAAAGA GCTAGGTG TTA CACCTCGC CTCGGTCTGCGCGTG Shal_1803 2155434 - 2157347 + | arginine decarboxylase TERM 2383 2157403 - 2157438 + F 100 -12.8 -4.7497 | opp_overlap 2157391 2157408, overlap 2157408 AAATAGCCTGTTTGC TATAACCAGCTTTAAG TTCG CTTGAAGCTGGTTTTA TTTTTAGTCAGTACC TERM 2384 2157433 - 2157408 - f 77 -10.5 -3.28712 | opp_overlap 2157403 2157408 GCCTGTTTGCTATAA CCAGCTTTAAG TTCG CTTGAAGCTGG TTTTATTTTTAGTCA TERM 2385 2157408 - 2157433 + F 100 -12.7 -5.3104 | opp_overlap 2157408, overlap 2157403 GCCTGTTTGCTATAA CCAGCTTTAAG TTCG CTTGAAGCTGG TTTTATTTTTAGTCA Shal_1804 2157562 - 2158482 + | adenosylmethionine decarboxylase Shal_1805 2158507 - 2159436 + | agmatinase TERM 2386 2159530 - 2159551 + F 100 -10.2 -6.23209 | opp_overlap 2159530 2159533 ATTGTTATCATTAAA GAAGCGCT AAATTA AGCGCTTC TTTTTTTTTGGTTCG TERM 2387 2159551 - 2159530 - f 80 -10.2 -3.78953 | opp_overlap 2159530, overlap 2159533 ATTGTTATCATTAAA GAAGCGCT AAATTA AGCGCTTC TTTTTTTTTGGTTCG Shal_1806 2159583 - 2160221 + | pyridoxamine 5'-phosphate oxidase TERM 2388 2160293 - 2160259 - f 100 -19.6 -3.73953 | opp_overlap 2160259 2160263 2160268, overlap 2160268 ACGATTGGTATTAAA TACACAAAAGCCGCAT ACC ATGCGGCTTTTGTATA TTTTGCGATCCGTCC TERM 2389 2160259 - 2160293 + F 100 -17.4 -4.14739 | opp_overlap 2160259 2160268, overlap 2160263 2160268 ACGATTGGTATTAAA TACACAAAAGCCGCAT ACC ATGCGGCTTTTGTATA TTTTGCGATCCGTCC TERM 2390 2160263 - 2160289 + F 100 -18.2 -3.41366 | opp_overlap 2160259 2160268, overlap 2160259 2160268 TTGGTATTAAATACA CAAAAGCCGCAT ACC ATGCGGCTTTTG TATATTTTGCGATCC TERM 2391 2160284 - 2160268 - f 100 -12.3 -4.74917 | opp_overlap 2160263 2160259 2160268, overlap 2160259 ATTAAATACACAAAA GCCGCAT ACC ATGCGGC TTTTGTATATTTTGC TERM 2392 2160268 - 2160284 + F 100 -12.3 -4.78933 | opp_overlap 2160268 2160259, overlap 2160263 2160259 ATTAAATACACAAAA GCCGCAT ACC ATGCGGC TTTTGTATATTTTGC Shal_1807 2160449 - 2161036 + | YceI family protein TERM 2393 2161483 - 2161469 - g 72 -5.7 -4.46514 | ATTCAGCCAAAGAAA TCTCG TGGTC CGAGA GGTCGACTCTATCGT Shal_1808 2161281 - 2161634 + | hypothetical protein TERM 2394 2161974 - 2161961 - f 85 -6.7 -5.07011 | overlap 2161955 2161954 CATATAAATCAAAAA TGGCA TTTT TGCCA CTGCACATGTACAAG TERM 2395 2162034 - 2162045 + F 74 -4.4 -4.9725 | TTATTTATTAAAAGC TGCT AGTT AGCA TTTTTATCTAAAGAT TERM 2396 2162695 - 2162680 - g 75 -2.6 -5.24129 | gap 1 GTCTCTGAGAAAAAA CTGATTG GCC CAA-CAG CTTCGATTAGCATTG Shal_1809 2162203 - 2163078 + | hypothetical protein TERM 2397 2163124 - 2163102 - T 100 -14.9 -3.29386 | opp_overlap 2163102, overlap 2163097 ATAAAATCAATCTAA GGCCGCACA ATAAA TGTGCGGCC TTTTTTATTTAAGCT TERM 2398 2163102 - 2163124 + T 100 -14.9 -5.64421 | opp_overlap 2163102 2163097 ATAAAATCAATCTAA GGCCGCACA ATAAA TGTGCGGCC TTTTTTATTTAAGCT Shal_1810 2165786 - 2163138 - | putative PAS/PAC sensor protein TERM 2399 2163815 - 2163827 + g 72 -6.3 -4.21194 | GCGAAGGGTACAGTG CTTGA TTC TCAAG TTTTACCTGCTCAAA TERM 2400 2164607 - 2164592 - G 78 -5.4 -4.91109 | TTTGCATGATAAAAA GTAGCA TCAA TGCCAC AATTTGTATGCTGAC TERM 2401 2165380 - 2165399 + g 70 -2.2 -5.0538 | GCAAAATCACGCGCC CAAAAATA ACTG TTTTTTTG TTTTTTAGAGTCAAA TERM 2402 2165965 - 2165951 - R 100 -7.1 -6.01187 | opp_overlap 2165951 AAGGAAACAAAAAAA GCAGC GTGTG GCTGC TTTTGTATGAAGTGG TERM 2403 2165951 - 2165965 + r 81 -7.1 -4.54047 | opp_overlap 2165951 AAGGAAACAAAAAAA GCAGC GTGTG GCTGC TTTTGTATGAAGTGG Shal_1811 2167500 - 2166004 - | methyl-accepting chemotaxis sensory transducer Shal_1812 2167940 - 2168926 + | phenylalanyl-tRNA synthetase subunit alpha Shal_1813 2168943 - 2171330 + | phenylalanyl-tRNA synthetase subunit beta Shal_1814 2171335 - 2171631 + | integration host factor, alpha subunit TERM 2404 2171650 - 2171679 + F 95 -13.7 -3.51904 | opp_overlap 2171650 2171649 2171653 2171655 2171656, overlap 2171656 CTTTAGCATCATAAT GAAGAGGCCACTC AATC GAGTGGCTTTTTC TGTTTCCATTTGCTG TERM 2405 2171656 - 2171673 + F 100 -11.3 -5.20783 | opp_overlap 2171655 2171653 2171650 2171649 2171656, overlap 2171650 CATCATAATGAAGAG GCCACTC AATC GAGTGGC TTTTTCTGTTTCCAT TERM 2406 2171673 - 2171656 - f 79 -11.3 -2.57988 | opp_overlap 2171656 2171650, overlap 2171655 2171653 2171650 2171649 CATCATAATGAAGAG GCCACTC AATC GAGTGGC TTTTTCTGTTTCCAT Shal_1815 2171709 - 2172647 + | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase TERM 2407 2172714 - 2172733 + T 95 -12.2 -4.53705 | opp_overlap 2172714 TTGCTCCACAAAAAA GCCGCAAT GGAT ATTGCGGC TTTTCTATGGCAATT TERM 2408 2172733 - 2172714 - T 100 -12.2 -5.24129 | opp_overlap 2172714 TTGCTCCACAAAAAA GCCGCAAT GGAT ATTGCGGC TTTTCTATGGCAATT Shal_1816 2173861 - 2172758 - | phosphoribosylaminoimidazole-succinocarboxamide synthase TERM 2409 2174091 - 2174069 - R 100 -14.2 -3.84719 | opp_overlap 2174068 2174057 ATCGCCAAAGGTAAA GGGCGTAAAC TTA GCTTACGCCC GTCAATTCGGCTACT Shal_1817 2174743 - 2174102 - | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein TERM 2410 2174656 - 2174676 + g 84 -4.7 -5.44119 | gap 1 GGAAGTTTTGTACCA CGGTAGGG ATTAAC CCCT-CCG TTTTTTTCCAGTCCA Shal_1818 2175568 - 2174795 - | imidazole glycerol phosphate synthase subunit HisF Shal_1819 2176287 - 2175550 - | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Shal_1820 2177003 - 2176287 - | imidazole glycerol phosphate synthase subunit HisH TERM 2411 2176390 - 2176405 + g 72 -3.2 -5.03314 | TTTGCCAATATCTTC GCGC CAACTTCA GCGC TTTTTTCCGGATGAA Shal_1821 2178079 - 2177000 - | imidazole glycerol-phosphate dehydratase/histidinol phosphatase Shal_1822 2179321 - 2178188 - | histidinol-phosphate aminotransferase Shal_1823 2180676 - 2179318 - | histidinol dehydrogenase Shal_1824 2181580 - 2180681 - | ATP phosphoribosyltransferase TERM 2412 2181581 - 2181591 + H 73 -5.4 -4.5287 | TGTTGTCTCTGACAT GGAA TAC TTCC TTTTCGTTAATTTAA TERM 2413 2181647 - 2181668 + H 100 -13.1 -5.02231 | opp_overlap 2181647 GATAAAACCAAAAAA CCCTTGGAA TTCC TTCCAAGGG TTTTTGATATTTTTA TERM 2414 2181668 - 2181647 - H 100 -13.1 -5.50313 | opp_overlap 2181647 GATAAAACCAAAAAA CCCTTGGAA TTCC TTCCAAGGG TTTTTGATATTTTTA TERM 2415 2181717 - 2181690 - H 77 -9.9 -3.52472 | gap 1, overlap 2181686 2181704 ATATTTTTAAATCAA CCGCCGGAAGGA AATAG TCCT-CCGGCAG TGAGCTTCCGAAGGC TERM 2416 2182837 - 2182853 + G 76 -2.2 -5.41143 | overlap 2182838 GGATGCACGCGTCAT TGTGGT TAATC ACCACC TTTTTTTAGCCGATC Shal_1825 2182232 - 2184157 + | helicase c2 Shal_1826 2184589 - 2184164 - | hypothetical protein Shal_1827 2185310 - 2186026 + | peptidase M22 glycoprotease Shal_1828 2186117 - 2186449 + | hypothetical protein TERM 2417 2186911 - 2186921 + G 82 -5.4 -5.16151 | CCATTCTGGCGAGTT TAGC CGT GCTA TTTTTGTTGCCTTTA Shal_1829 2186442 - 2187188 + | hypothetical protein Shal_1830 2187309 - 2188142 + | hypothetical protein Shal_1831 2188151 - 2189026 + | alpha/beta hydrolase fold TERM 2418 2189753 - 2189728 - g 70 -9.1 -3.32647 | opp_overlap 2189733, overlap 2189733 TGTTAAGTACATCAA GAAAATGGTAC CTAA GTACCATTTGC CACATGCTATCTCTA TERM 2419 2189748 - 2189733 - g 84 -7.6 -4.76075 | opp_overlap 2189733, overlap 2189728 AGTACATCAAGAAAA TGGTAC CTAA GTACCA TTTGCCACATGCTAT Shal_1832 2189213 - 2190886 + | long-chain-fatty-acid--CoA ligase TERM 2420 2190933 - 2190948 + F 95 -11.8 -4.33907 | opp_overlap 2190933 TGTGATTACAAAAAA GCCGGC GATC GCCGGC TTTTGCATATTTATG TERM 2421 2190948 - 2190933 - f 100 -11.8 -5.31275 | opp_overlap 2190933 TGTGATTACAAAAAA GCCGGC GATC GCCGGC TTTTGCATATTTATG TERM 2422 2191918 - 2191908 - g 78 -5.4 -4.8083 | TAAGAGCATCAAAAA CTGT ATT ACAG AGCAAGCTGAGGCAA Shal_1833 2190976 - 2192085 + | ribonuclease D TERM 2423 2192131 - 2192114 - T 100 -12.7 -4.89339 | opp_overlap 2192114 AACTATCTACAAAAA TGCCCGC ATAA GCGGGCA TTTTTATTAGCAATA TERM 2424 2192114 - 2192131 + T 100 -12.7 -5.07486 | opp_overlap 2192114 AACTATCTACAAAAA TGCCCGC ATAA GCGGGCA TTTTTATTAGCAATA Shal_1834 2192417 - 2192157 - | cell division topological specificity factor MinE Shal_1835 2193230 - 2192421 - | septum site-determining protein MinD Shal_1836 2193924 - 2193259 - | septum site-determining protein MinC TERM 2425 2193323 - 2193311 - G 76 -9.1 -3.67611 | opp_overlap 2193292 TCTAGGCGAATACAA CCGCT TAG AGCGG CTCCGTTTTGCTGAA TERM 2426 2193963 - 2193949 - H 76 -3.5 -5.24129 | GCTCTCTAGAAAAAA TCAGC ACAAA GCCGA TATCCATTATATTCC Shal_1837 2194045 - 2194326 + | hypothetical protein Shal_1838 2194367 - 2195362 + | lytic murein transglycosylase Shal_1839 2195559 - 2195999 + | hypothetical protein TERM 2427 2196009 - 2196053 + T 73 -8.2 -3.84931 | gap 1, opp_overlap 2196013 2196023, overlap 2196011 2196023 GAATAGCAAGAGTCG AAGATATAAAAAAACGCCTTA TTAA TTAGGCGTTTTTTT-TATCTA TTTAAGTCTTTGTTA TERM 2428 2196011 - 2196051 + T 82 -10.8 -3.4926 | gap 1, opp_overlap 2196013 2196023, overlap 2196009 2196023 ATAGCAAGAGTCGAA GATATAAAAAAACGCCTTA TTAA TTAGGCGTTTTTTT-TATC TATTTAAGTCTTTGT TERM 2429 2196040 - 2196023 - T 100 -5.5 -5.80248 | opp_overlap 2196011 2196009 2196023, overlap 2196013 GAAGATATAAAAAAA CGCCTTA TTAA TTAGGCG TTTTTTTTATCTATT TERM 2430 2196023 - 2196040 + T 100 -5.5 -6.08563 | opp_overlap 2196023 2196013, overlap 2196011 2196009 GAAGATATAAAAAAA CGCCTTA TTAA TTAGGCG TTTTTTTTATCTATT Shal_1840 2196621 - 2196097 - | disulphide bond formation protein DsbB TERM 2431 2196637 - 2196655 + r 100 -13.2 -4.55287 | opp_overlap 2196637 TGCAGATAAAAAAAA CGCCCTAT TGA ATAGGGCG TTTTATATGACTAAC TERM 2432 2196655 - 2196637 - R 100 -13.2 -6.02914 | opp_overlap 2196637 TGCAGATAAAAAAAA CGCCCTAT TGA ATAGGGCG TTTTATATGACTAAC Shal_1841 2198286 - 2196700 - | sodium/proton antiporter TERM 2433 2197529 - 2197514 - G 74 -6.8 -4.3255 | TTCTCAACCAAGAAA CAGGTG GTAA CACCCG CAAAGAATACCGGTA TERM 2434 2198216 - 2198206 - G 78 -5.4 -4.77036 | GTTGATCACCAAAAA CGAT ATG ATCG CGAGTTTGAACCACT Shal_1842 2198583 - 2199302 + | fatty acid metabolism regulator TERM 2435 2199350 - 2199334 - T 88 -8 -5.04249 | opp_overlap 2199334 GTTTTAAAAAAGAAA GCCATC GTTAA GATGGC TTTTTTGTTTTTAAT TERM 2436 2199334 - 2199350 + T 100 -8 -5.95286 | opp_overlap 2199334 GTTTTAAAAAAGAAA GCCATC GTTAA GATGGC TTTTTTGTTTTTAAT Shal_1843 2203393 - 2199386 - | hypothetical protein TERM 2437 2202545 - 2202559 + g 72 -5.6 -4.40003 | ATTTGCCATTGCCCA GTCGTC ACT GGCGGC TTTATCTTTGTCAGC Shal_1844 2205237 - 2203390 - | surface antigen (D15) TERM 2438 2204837 - 2204847 + g 80 -6.8 -4.58395 | overlap 2204841 GGACGGATTTTTAAT TGGC TGA GCCA TTTTTCAAAAATGGG TERM 2439 2205187 - 2205172 - G 72 -6.2 -4.27316 | CGCCTGAACTGAAAA TGTTAC GCAT GTAACA CCGATAAGCAGTAAG TERM 2440 2205441 - 2205455 + G 73 -4.2 -4.74504 | GTCTGCAAGTAGCAT GGCC AGTGATA GGCC TTTTTCAATTGCGAT TERM 2441 2205654 - 2205635 - g 72 -8.6 -3.81279 | gap 1 ATATCCTAGAAAACA GCCCGCTAT TTA AT-GCGGGC ATTGGCGCGGTATAT TERM 2442 2206320 - 2206342 + G 72 -8.4 -3.78034 | opp_overlap 2206309 TAATCAGCGTCTAAT CACTGCTGGT GGT ACCGGTGGTG TTGTTGCTATCGATC Shal_1845 2205385 - 2206458 + | peptidase T2 asparaginase 2 Shal_1846 2206614 - 2206973 + | hypothetical protein Shal_1847 2207268 - 2207723 + | xanthine-guanine phosphoribosyltransferase TERM 2443 2207742 - 2207758 + F 100 -13.7 -6.02919 | opp_overlap 2207742 CTCAAATTATAGAAA CCGAGGC ATC GCCTCGG TTTTTTTGTTTCTAA TERM 2444 2207758 - 2207742 - f 100 -13.7 -4.17516 | opp_overlap 2207742 CTCAAATTATAGAAA CCGAGGC ATC GCCTCGG TTTTTTTGTTTCTAA Shal_1848 2207905 - 2208321 + | signal transduction protein TERM 2445 2208393 - 2208429 + T 72 -8.8 -3.54109 | gap 1, opp_overlap 2208394 2208395, overlap 2208405 TCAGCAAGTAAAAAA GCTGCGAGATGATCCCG CTAT TGGGGTT-TCTTGCAGC TTGTCATTCAATTAG Shal_1849 2209681 - 2208500 - | choloylglycine hydrolase Shal_1850 2209861 - 2210892 + | diguanylate cyclase TERM 2446 2211415 - 2211439 + G 78 -6.3 -4.66833 | opp_overlap 2211412 CACTGTTATGAAGCT GACGCTGCCAA AAT TAGGCGTCGTC TTTTTCGGCTTAGAA TERM 2447 2214629 - 2214619 - g 77 -6.8 -4.42806 | opp_overlap 2214618 TCACTGCCAAATAAA GCCA AAC TGGC GATGTATTTTAATCC Shal_1851 2211358 - 2215239 + | ATP-dependent helicase HrpA TERM 2448 2215264 - 2215283 + F 82 -7.8 -4.50358 | opp_overlap 2215264, overlap 2215266 AGCACCTATTACAAA CGCACAGC ACTC GCTGTGAG TTTTCATGTTTAGCT TERM 2449 2215283 - 2215264 - f 75 -7.8 -3.98214 | opp_overlap 2215264 2215266 AGCACCTATTACAAA CGCACAGC ACTC GCTGTGAG TTTTCATGTTTAGCT TERM 2450 2215396 - 2215366 - f 100 -17 -4.61231 | opp_overlap 2215371, overlap 2215371 GGACAGCCTTAAAAA TAAAAGCCAGCGCA AAT TGCGCTGGCTTTTT TGTTTTTTTCCTTTA TERM 2451 2215371 - 2215391 + F 100 -16.9 -6.12458 | opp_overlap 2215366 2215371 GCCTTAAAAATAAAA GCCAGCGCA AAT TGCGCTGGC TTTTTTGTTTTTTTC TERM 2452 2215391 - 2215371 - f 100 -16.9 -5.26119 | opp_overlap 2215371, overlap 2215366 GCCTTAAAAATAAAA GCCAGCGCA AAT TGCGCTGGC TTTTTTGTTTTTTTC TERM 2453 2215929 - 2215944 + G 74 -5.4 -4.65747 | TCAGGCAAGATTATG TCGTTC CTTT GAGCGA TTTTATTACCGGTTC TERM 2454 2216733 - 2216747 + G 70 -10 -2.96984 | opp_overlap 2216731 2216730, overlap 2216731 CACCATTAGAAAGGC GCCAAG CAG CTTGGC TCTATGCTCAGTTTG Shal_1852 2215511 - 2217214 + | sugar ABC transporter extracellular solute-binding family 1 protein TERM 2455 2218012 - 2217974 - g 86 -4 -5.56264 | gap 2 TTCAAAGATAAAAAA CCATCTCGATTC--TGCC TTATT GGCAATGTATCAAGATGG TTTTATTGATAGCTT TERM 2456 2218024 - 2218055 + G 70 -8.8 -3.3514 | opp_overlap 2218054 ATGGTTTTATTGATA GCTTATATTTACGC TATG GCGTCACTATAAGC TTGTAACGTCTCGCT Shal_1853 2217201 - 2218061 + | hypothetical protein Shal_1854 2219083 - 2218082 - | D-alanyl-alanine synthetase A TERM 2457 2218247 - 2218235 - G 71 -7.7 -3.97709 | ATCAGTTAAGAAGAA GTCGA TTC TCGAC AGGTGTCTTAACTTC Shal_1855 2221228 - 2219255 - | exodeoxyribonuclease V, alpha subunit TERM 2458 2220644 - 2220624 - G 74 -6.9 -4.30719 | CCTTCGCACAACAAA TACAGTAAC TTA GTCACCGTA GTCGTTTTACCTGTA TERM 2459 2220691 - 2220714 + g 80 -6 -5.03715 | overlap 2220682 TGACGGCTAACTTCT TAGTCATTGC CGTG GCGGTGGCTA TTTTTTGCCAGTCAT Shal_1856 2224947 - 2221225 - | exodeoxyribonuclease V, beta subunit TERM 2460 2222764 - 2222781 + g 89 -9.1 -4.72272 | AATGAGTGCGCTGCT GCCATCG AGTT CGGTGGC TTTTTGCTGCAGCAG TERM 2461 2224117 - 2224128 + g 70 -2.2 -5.00616 | TTTGGCAAGTTTAGG GTAG CCGT CTGC TTTTTTACCAAAACG Shal_1857 2228722 - 2224949 - | exodeoxyribonuclease V, gamma subunit Shal_1858 2230823 - 2228781 - | transglutaminase domain-containing protein TERM 2462 2228864 - 2228838 - G 73 -11 -2.72463 | ATTGATTTTTAACCA TCTCGATTGCTT GAT AAGTAATCGAGA AAAACGCTTAAGGGC Shal_1859 2231938 - 2230820 - | hypothetical protein TERM 2463 2231545 - 2231555 + g 71 -6.8 -4.1466 | CAGTTTTAACGACTT CCAG AGG CTGG TTTTGAAAATTAAGT TERM 2464 2231627 - 2231647 + g 77 -9 -3.85704 | opp_overlap 2231622 2231636, overlap 2231625 2231628 2231631 AAAATAGACAGCTTG GCCAGCGA AGCCA TTGCTGGC TTTACTGCTTGATAG Shal_1860 2232982 - 2232071 - | ATPase Shal_1861 2233805 - 2233068 - | diguanylate phosphodiesterase Shal_1862 2235850 - 2233961 - | lytic transglycosylase catalytic TERM 2465 2235302 - 2235322 + g 71 -9.8 -3.14931 | opp_overlap 2235300 2235298 2235302 TTGGCGTGAAAGATA GGACAGTA GGCCA TACTGTCC TTGCTCGAAGCTGAG TERM 2466 2235322 - 2235302 - G 71 -9.8 -3.24232 | opp_overlap 2235302, overlap 2235300 2235298 TTGGCGTGAAAGATA GGACAGTA GGCCA TACTGTCC TTGCTCGAAGCTGAG Shal_1863 2237475 - 2235970 - | hypothetical protein Shal_1864 2237691 - 2238713 + | putative sulfite oxidase subunit YedY Shal_1865 2238781 - 2239434 + | putative sulfite oxidase subunit YedZ Shal_1866 2240130 - 2239813 - | hypothetical protein Shal_1867 2240313 - 2240810 + | regulator of ribonuclease activity A TERM 2467 2241243 - 2241217 - g 70 -5.1 -4.51743 | CCACTACTAAAGAAA GAGGTGGAGAT CTCAC AGCTCAACCTC GATGGCTTAACTTTG TERM 2468 2241887 - 2241874 - g 72 -5.9 -4.50193 | ACCAAGCAAGCAAAA GGCGC TAAA GCACC AAACACGTCATCGAA Shal_1868 2240908 - 2242743 + | AsmA family protein Shal_1869 2242743 - 2243315 + | intracellular proteinase inhibitor domain-containing protein TERM 2469 2243390 - 2243419 + T 91 -13.7 -2.68493 | opp_overlap 2243396, overlap 2243396 GATAGCTTTAGTAGC AAAAAAGGCGACC ACTT GGTCGCCTTTTTA ATATTTACTGCTCGG TERM 2470 2243413 - 2243396 - T 100 -12.7 -5.1861 | opp_overlap 2243390 2243396 TTTAGTAGCAAAAAA GGCGACC ACTT GGTCGCC TTTTTAATATTTACT TERM 2471 2243396 - 2243413 + T 100 -12.7 -4.946 | opp_overlap 2243396, overlap 2243390 TTTAGTAGCAAAAAA GGCGACC ACTT GGTCGCC TTTTTAATATTTACT Shal_1870 2245011 - 2243452 - | lytic transglycosylase catalytic TERM 2472 2245061 - 2245046 - R 72 -3.2 -5.04987 | opp_overlap 2245046, overlap 2245035 AATAGGCTCAAAAAA GCCAGA AAAC TCTTGC TTAGTTCTGGCTTCG Shal_1871 2245888 - 2245112 - | hydroxyacylglutathione hydrolase TERM 2473 2246117 - 2246133 + G 78 -5.1 -4.99435 | overlap 2246119 2246127 CGAGCAGGCATTATC TCCTTGG TGG CCAAGAA TTTTTGGTTATTACA Shal_1872 2246025 - 2246765 + | methyltransferase type 11 TERM 2474 2246905 - 2246871 - g 71 -7.3 -4.1585 | GGACAAGTTGCAAAA GCTGCT-GAGATGGTCA ATT TGTC-ATCTCCAGCAGC ATCGATGGCACTGTC Shal_1873 2246805 - 2247701 + | LysR family transcriptional regulator Shal_1874 2248298 - 2247813 - | ribonuclease H Shal_1875 2248372 - 2249100 + | DNA polymerase III, epsilon subunit TERM 2475 2249247 - 2249233 - g 72 -2.8 -5.08824 | opp_overlap 2249233 2249243 CTCTGAGTTAAAAAA TCGATT TAG ACTCGA TCATATGGTTGAGTC Shal_1876 2249111 - 2250445 + | hypothetical protein TERM 2476 2250475 - 2250485 + F 73 -5.4 -4.63527 | opp_overlap 2250475 TGTCGAAGAATAAAT CGAA TTG TTCG TTTTTCGACTAGTCA TERM 2477 2250970 - 2251005 + F 83 -12 -3.17713 | opp_overlap 2250970 2250977, overlap 2250977 2251004 CTCCGCCAACACAAA GACGAAAGCCTCTACA GCAA TGTAGGGGCTTTTTTC GTTTTACGATTTTTA TERM 2478 2251005 - 2250970 - f 76 -7.6 -4.1891 | opp_overlap 2250970 2250977 2251004, overlap 2250977 CTCCGCCAACACAAA GACGAAAGCCTCTACA GCAA TGTAGGGGCTTTTTTC GTTTTACGATTTTTA TERM 2479 2250998 - 2250977 - f 79 -8.7 -4.07089 | opp_overlap 2250970 2250977, overlap 2250970 AACACAAAGACGAAA GCCTCTACA GCAA TGTAGGGGC TTTTTTCGTTTTACG TERM 2480 2250977 - 2250998 + F 100 -10.9 -5.46698 | opp_overlap 2250977 2250970, overlap 2250970 AACACAAAGACGAAA GCCTCTACA GCAA TGTAGGGGC TTTTTTCGTTTTACG TERM 2481 2251004 - 2251014 + F 73 -5.4 -4.62783 | opp_overlap 2250970, overlap 2250970 ATGTAGGGGCTTTTT TCGT TTT ACGA TTTTTAAAGTAAATA TERM 2482 2252643 - 2252628 - g 72 -10.4 -2.78211 | opp_overlap 2252627, overlap 2252627 2252625 AGTGGGCCAAAATAC TCGGCG TCAC CGCCGA CTCGTCTCAGGGCTT TERM 2483 2252837 - 2252824 - g 70 -5.3 -4.43844 | CGAGCATGCAGAAAA CCATA TGGA TATGG CAGGGATTGGCCGAG Shal_1877 2251460 - 2253319 + | sodium/hydrogen exchanger TERM 2484 2253465 - 2253486 + F 75 -9.5 -3.35586 | overlap 2253461 ATGCCCCAAAGTTGG TTAGCCTTC GAAT GAAGGCTGA TTACATTTACTTTGA TERM 2485 2254197 - 2254212 + G 74 -5.4 -4.5787 | overlap 2254198 TTGTTAATGAGGCGG TGATGC AGCT GCATCG TGTTTTTTTTGGTCA Shal_1878 2253938 - 2255041 + | hypothetical protein Shal_1879 2255307 - 2256353 + | hypothetical protein TERM 2486 2256880 - 2256866 - g 79 -4.2 -5.09895 | opp_overlap 2256868, overlap 2256868 GAGTCATTGAAAAAA CAGGTG CTA CACCTC ATTCAAACCAAGTAT TERM 2487 2256878 - 2256868 - g 71 -6.8 -4.17608 | opp_overlap 2256868, overlap 2256866 GTCATTGAAAAAACA GGTG CTA CACC TCATTCAAACCAAGT TERM 2488 2258013 - 2257992 - g 71 -3.7 -4.76963 | overlap 2257994 TGACAGAAGAGAAAA TCGTCGAGC TGAC ACTCAACAA TCCATATCGTACTTC Shal_1880 2256647 - 2258170 + | integrase catalytic region TERM 2489 2258184 - 2258166 - f 71 -6 -4.14764 | opp_overlap 2258165 CCCTAAATAAGGAAA TCTAGCAT GAT AGGCTAGA CTATATAGTGAACGA Shal_1881 2258968 - 2260260 + | putative serine transporter TERM 2490 2260268 - 2260300 + F 75 -9.9 -3.4158 | opp_overlap 2260270, overlap 2260270 TGCAGTAAAACGACG AAGAGGGCAAGAGCC ATT GGTTTTTGCTCTCTC TTCCTGCTTTTTCGC TERM 2491 2260270 - 2260298 + F 85 -12.5 -3.26718 | opp_overlap 2260270, overlap 2260268 CAGTAAAACGACGAA GAGGGCAAGAGCC ATT GGTTTTTGCTCTC TCTTCCTGCTTTTTC Shal_1882 2260889 - 2261263 + | hypothetical protein TERM 2492 2261495 - 2261485 - g 76 -4.6 -4.96848 | GTCGCCAGAGAAAAA CGCG AAG CACG CCGCGAAATCCGTCA Shal_1883 2261260 - 2261631 + | hypothetical protein TERM 2493 2261647 - 2261625 - f 74 -9.2 -3.51597 | overlap 2261628 AATTGCTAACGATAA TAACTGAGCC AGT GGCTTAGTTA CACCAGCTTGAATGC TERM 2494 2261738 - 2261751 + F 77 -5.2 -4.87665 | AAGGAACGTTTTTAA CCGC AAGGAC GCGG TTTTTCTCGATAGGC Shal_1884 2262095 - 2263327 + | iron-containing alcohol dehydrogenase TERM 2495 2263731 - 2263717 - T 71 -4.2 -4.90266 | opp_overlap 2263718, overlap 2263718 GGTATGAAGTAAAAA TCAGCT GGT AGCTGT TTTAGCCCTGTGATA TERM 2496 2263718 - 2263730 + T 75 -7.7 -4.13282 | opp_overlap 2263718 2263717 GTATGAAGTAAAAAT CAGCT GGT AGCTG TTTTAGCCCTGTGAT Shal_1885 2264458 - 2263907 - | LysR family transcriptional regulator TERM 2497 2265725 - 2265739 + G 74 -11.4 -2.76671 | opp_overlap 2265725, overlap 2265724 GGCTTCTGCAAGCAA CGGTCC TTT GGACCG CTTTAAAATGACTGT TERM 2498 2265739 - 2265725 - g 79 -11.4 -3.33696 | opp_overlap 2265725 2265724 GGCTTCTGCAAGCAA CGGTCC TTT GGACCG CTTTAAAATGACTGT Shal_1886 2264544 - 2266208 + | sulfatase TERM 2499 2267299 - 2267264 - g 74 -6.8 -4.34402 | opp_overlap 2267265 2267278, overlap 2267265 2267266 TTTGGTAGAGGAAAA TCCACAACACTGACGC CACA GTGTCAGCGCTGTGAC TATTTGTTTGCCTGT TERM 2500 2267298 - 2267265 - g 74 -10.3 -3.2032 | opp_overlap 2267265 2267278, overlap 2267264 2267266 TTGGTAGAGGAAAAT CCACAACACTGACGC CACA GTGTCAGCGCTGTGA CTATTTGTTTGCCTG TERM 2501 2267297 - 2267266 - g 76 -11.6 -2.51871 | opp_overlap 2267265 2267278, overlap 2267265 2267264 TGGTAGAGGAAAATC CACAACACTGACGC CACA GTGTCAGCGCTGTG ACTATTTGTTTGCCT Shal_1887 2266256 - 2267500 + | radical SAM domain-containing protein TERM 2502 2267494 - 2267525 + F 89 -9.5 -4.15657 | gap 1, opp_overlap 2267491 2267503, overlap 2267491 2267521 AAAACTAGCAAAGGT GC-GCTAACAGCAC CTCTA GTGCAGTTAGCAGC TTTATCTGCTTCTAA TERM 2503 2268687 - 2268677 - g 85 -6.8 -4.99043 | overlap 2268682 GCTGGATAAACAAAA GCCA ACG TGGC ATAGGCCGTGACACG Shal_1888 2267794 - 2269950 + | catalase/peroxidase HPI TERM 2504 2270042 - 2270071 + F 89 -6.6 -5.1971 | gap 1, opp_overlap 2270042 2270043 2270045, overlap 2270043 TGTTTCAAATAAAAT G-GAGATCTAAGT GGTGA ACTTAGGTCTCTC TTTTTGCTTTTTCAT TERM 2505 2270043 - 2270069 + F 89 -10.3 -4.20007 | opp_overlap 2270043 2270042 2270045, overlap 2270042 GTTTCAAATAAAATG GAGATCTAAGT GGTGA ACTTAGGTCTC TCTTTTTGCTTTTTC Shal_1889 2270399 - 2270683 + | hypothetical protein TERM 2506 2271250 - 2271208 - T 100 -16.6 -3.05498 | opp_overlap 2271218, overlap 2271218 GACGGGATATACAGA TAAATAAAAAGGCCTAAGTG ATC CACTTAGGCCTTTTTATTGG TTGAGATACTTACAG TERM 2507 2271240 - 2271218 - T 100 -16.4 -5.4433 | opp_overlap 2271218, overlap 2271208 ACAGATAAATAAAAA GGCCTAAGTG ATC CACTTAGGCC TTTTTATTGGTTGAG TERM 2508 2271218 - 2271240 + T 100 -16.4 -5.1963 | opp_overlap 2271218 2271208 ACAGATAAATAAAAA GGCCTAAGTG ATC CACTTAGGCC TTTTTATTGGTTGAG Shal_1890 2273717 - 2271270 - | acyl-CoA dehydrogenase TERM 2509 2273869 - 2273854 - H 90 -4.8 -5.64304 | opp_overlap 2273854 TAATACAAGAAAAAA TTAAAC AAAT GTTTAA ATTCTGTGTTTTCTA Shal_1891 2273965 - 2274750 + | glutamine amidotransferase class-II TERM 2510 2274794 - 2274770 - T 93 -10.1 -4.98531 | opp_overlap 2274770 TCCTGAAATTAAAAA GCTCGCTAA GCCTAAG TTAGCGAGC TTTTTTGTTATCTCT TERM 2511 2274770 - 2274794 + T 100 -10.1 -5.62045 | opp_overlap 2274770 TCCTGAAATTAAAAA GCTCGCTAA GCCTAAG TTAGCGAGC TTTTTTGTTATCTCT Shal_1892 2275641 - 2274853 - | hypothetical protein Shal_1893 2276125 - 2275799 - | methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding Shal_1894 2276363 - 2277034 + | hypothetical protein TERM 2512 2277105 - 2277069 - T 70 -8.1 -3.7108 | opp_overlap 2277074, overlap 2277074 AGCTTGATATTTAAA TAAAATGCCCGTGAA AAATAAG TACACGGGCATTTTT ATTTTAACACTGGGC TERM 2513 2277100 - 2277074 - T 86 -8 -4.92385 | opp_overlap 2277074, overlap 2277069 GATATTTAAATAAAA TGCCCGTGAA AAATAAG TACACGGGCA TTTTTATTTTAACAC TERM 2514 2277074 - 2277100 + T 93 -8 -5.45802 | opp_overlap 2277074 2277069 GATATTTAAATAAAA TGCCCGTGAA AAATAAG TACACGGGCA TTTTTATTTTAACAC Shal_1895 2278926 - 2277205 - | major facilitator transporter TERM 2515 2279097 - 2279117 + H 83 -8.9 -3.97674 | opp_overlap 2279097 ACTAGAGTTAAATTA CCGCAGTGG TTG CCTTTGCGG TTGTTTCGGTCATAA Shal_1896 2279175 - 2279666 + | peptide deformylase TERM 2516 2279729 - 2279751 + F 100 -7.7 -5.64274 | gap 1, opp_overlap 2279729 CAGTTGTAAAATTAA GCGCACCTCT TATG AGGGG-GCGC TTTTTTTATGGCTCA Shal_1897 2279943 - 2280359 + | DTW domain-containing protein TERM 2517 2280427 - 2280398 - T 100 -15.9 -4.10657 | opp_overlap 2280402 2280405, overlap 2280402 TTATAGTTTTTAAAA CAAAGAACCCAGC TTAG GCTGGGTTCTTTA CTTATTAATCAGATT TERM 2518 2280402 - 2280423 + T 100 -14.5 -4.09805 | opp_overlap 2280398 2280402, overlap 2280405 AGTTTTTAAAACAAA GAACCCAGC TTAG GCTGGGTTC TTTACTTATTAATCA TERM 2519 2280423 - 2280402 - T 100 -14.5 -4.65263 | opp_overlap 2280402 2280405, overlap 2280398 AGTTTTTAAAACAAA GAACCCAGC TTAG GCTGGGTTC TTTACTTATTAATCA TERM 2520 2280405 - 2280420 + T 89 -10.4 -4.15577 | opp_overlap 2280402 2280398, overlap 2280402 TTTTAAAACAAAGAA CCCAGC TTAG GCTGGG TTCTTTACTTATTAA Shal_1898 2281181 - 2280483 - | hemolysin III family channel protein TERM 2521 2280968 - 2280956 - G 72 -6.3 -4.34993 | GAAACAGCAAAATAA TACTG CAA CAGTA CACCACCACGCCTGT TERM 2522 2281279 - 2281240 - H 90 -11.6 -4.13767 | opp_overlap 2281244, overlap 2281244 2281247 TTTTTGATTTGAAAA GCTATAAGTTAAGCGCAC ACGT GTACGCTTAACTTATTTC TTAGATTTAACTCTC TERM 2523 2281244 - 2281275 + H 100 -13.2 -4.29326 | opp_overlap 2281244 2281240 2281247 TGATTTGAAAAGCTA TAAGTTAAGCGCAC ACGT GTACGCTTAACTTA TTTCTTAGATTTAAC TERM 2524 2281275 - 2281244 - H 95 -15.4 -2.75577 | opp_overlap 2281244, overlap 2281240 2281247 TGATTTGAAAAGCTA TAAGTTAAGCGCAC ACGT GTACGCTTAACTTA TTTCTTAGATTTAAC TERM 2525 2281272 - 2281247 - H 90 -12.7 -3.52113 | opp_overlap 2281244, overlap 2281244 2281240 TTTGAAAAGCTATAA GTTAAGCGCAC ACGT GTACGCTTAAC TTATTTCTTAGATTT Shal_1899 2281578 - 2282543 + | hypothetical protein TERM 2526 2284659 - 2284675 + G 76 -5.1 -4.76041 | overlap 2284661 TCTTTACCTCAAGAG TCTGCCA AAG TGGCACA TTTTTGCTCCATGTG Shal_1900 2282952 - 2284940 + | thiamine biosynthesis protein ThiC Shal_1901 2284943 - 2286556 + | phosphomethylpyrimidine kinase Shal_1902 2286559 - 2287446 + | UBA/THIF-type NAD/FAD binding protein Shal_1903 2287485 - 2287757 + | thiamine biosynthesis protein ThiS Shal_1904 2287759 - 2288526 + | thiazole biosynthesis family protein TERM 2527 2289160 - 2289144 - g 84 -8.1 -4.66609 | TACGCGAGGCAAAAA GAAAGAT TTT ATCTTTC GGCTCGAGTCCCCCG Shal_1905 2288551 - 2289657 + | thiamine biosynthesis protein ThiH Shal_1906 2289747 - 2290058 + | hypothetical protein Shal_1907 2290729 - 2290367 - | response regulator receiver protein Shal_1908 2290987 - 2291253 + | methyl-accepting chemotaxis protein TERM 2528 2292073 - 2292086 + G 79 -2.4 -5.53288 | CAGCAAGCTTTTTTG GCAT TTGAAC ATGC TTTTTTTCAGTTGCA Shal_1909 2291392 - 2293848 + | histidine kinase TERM 2529 2294045 - 2294017 - T 72 -9.7 -2.98282 | opp_overlap 2294015 2294013 2294012, overlap 2294021 ACGAACCATTACATA TTAAGAGGCCC GGTGCTT GAGCCTCTTAA TCGTGGTTTTTAGCT Shal_1910 2295046 - 2294060 - | hypothetical protein Shal_1911 2296829 - 2295090 - | response regulator receiver protein TERM 2530 2296727 - 2296744 + gr 84 -12.7 -3.02144 | GTGGGATAGGTGACA CGGCAGC ATGA GCTGCCG TGTTAAACCAACTGA Shal_1912 2297748 - 2296798 - | alpha-L-glutamate ligase-like protein Shal_1913 2299256 - 2297748 - | gonadoliberin III-related protein Shal_1914 2300023 - 2299268 - | hypothetical protein TERM 2531 2299516 - 2299530 + g 72 -5 -4.64144 | GCACAAAGCGTTCCA CTTTTG ATT CAAAGG TTTTTGCAGGTTGTT Shal_1915 2301038 - 2300046 - | putative methyltransferase Shal_1916 2301766 - 2301035 - | putative methyltransferase TERM 2532 2301231 - 2301246 + g 71 -3.3 -4.84673 | opp_overlap 2301231, overlap 2301231 TCGAGGTGCAAATCA TCCAA AGTGGA TTGGA TTTTATCTTCTTTAA TERM 2533 2301256 - 2301268 + g 72 -4.9 -4.57837 | ATTGGATTTTATCTT CTTTA AAG TAAAG TTTTTCAGACAATAT Shal_1917 2301947 - 2304727 + | diguanylate cyclase TERM 2534 2304973 - 2304994 + G 72 -5.7 -4.5448 | GTGGGTTGGGTTAAT CGCAGCCGA GATT TAGGCGGCG TTGTTTTTCTCGATC TERM 2535 2305085 - 2305095 + G 74 -5.4 -4.6821 | opp_overlap 2305082 ATGTTGCAAGCACAC TTCG CAG CGAA TTTTGTGTTCAGATT TERM 2536 2305256 - 2305242 - g 72 -2.8 -4.91459 | overlap 2305243 2305251 CAACATGGACAAAAA CCAGCA CAA TACTGA AGAGCAGCGTCTTAA Shal_1918 2304898 - 2306694 + | aspartyl-tRNA synthetase TERM 2537 2306738 - 2306699 - f 74 -6.4 -4.45068 | opp_overlap 2306710, overlap 2306708 2306710 ACGCTGAATAATAAA GCGTAATAAGAGCCGAGT TAAG ACTCGGCTTTTTTTTCGA CTAATTGAACCCCAT TERM 2538 2306729 - 2306708 - f 73 -8.7 -3.72593 | opp_overlap 2306710, overlap 2306699 2306710 AATAAAGCGTAATAA GAGCCGAGT TAAG ACTCGGCTT TTTTTTCGACTAATT TERM 2539 2306710 - 2306727 + F 100 -11.3 -5.78622 | opp_overlap 2306708 2306699 2306710 TAAAGCGTAATAAGA GCCGAGT TAAG ACTCGGC TTTTTTTTCGACTAA TERM 2540 2306727 - 2306710 - f 85 -11.3 -3.4314 | opp_overlap 2306710, overlap 2306708 2306699 TAAAGCGTAATAAGA GCCGAGT TAAG ACTCGGC TTTTTTTTCGACTAA Shal_1919 2306858 - 2307601 + | hypothetical protein Shal_1920 2307609 - 2308130 + | crossover junction endodeoxyribonuclease RuvC Shal_1921 2308127 - 2308744 + | Holliday junction DNA helicase RuvA Shal_1922 2308754 - 2309767 + | Holliday junction DNA helicase B TERM 2541 2309869 - 2309894 + F 70 -9.9 -2.70017 | gap 1, overlap 2309868 2309867 GCTGTCATCTCTCTA TGAGGAGTCAAT GTT ATTG-CTCCTCA ATATTTCAATTTCAC TERM 2542 2310180 - 2310139 - f 73 -7.4 -4.00042 | opp_overlap 2310143, overlap 2310140 2310143 TTTCTTACTAAAGAA TTGAGTGCGAAATTGTGA TGCGCG TCACAATTTCGCACTTTG GCTTGGTTAATAAAA TERM 2543 2310179 - 2310140 - f 78 -10.9 -2.99704 | opp_overlap 2310143, overlap 2310139 2310143 TTCTTACTAAAGAAT TGAGTGCGAAATTGTGA TGCGCG TCACAATTTCGCACTTT GGCTTGGTTAATAAA TERM 2544 2310176 - 2310143 - f 100 -17 -2.72559 | opp_overlap 2310143, overlap 2310140 2310139 TTACTAAAGAATTGA GTGCGAAATTGTGA TGCGCG TCACAATTTCGCAC TTTGGCTTGGTTAAT TERM 2545 2310143 - 2310176 + F 100 -17.7 -3.81428 | opp_overlap 2310140 2310139 2310143 TTACTAAAGAATTGA GTGCGAAATTGTGAT GCGC GTCACAATTTCGCAC TTTGGCTTGGTTAAT TERM 2546 2310482 - 2310504 + G 77 -11.4 -3.14468 | TCTAAATTGGCCACT GCGATTAAGT TTG GCTTAATCGC TTCGGTATCATCGAC TERM 2547 2312433 - 2312422 - g 82 -7.2 -4.81249 | CTTTAAAGTGAAAAA CGCG ATTA CGCG CCTTGATACGCAGGC Shal_1923 2310455 - 2313061 + | TonB-dependent receptor TERM 2548 2313113 - 2313080 - T 72 -9.7 -3.06183 | opp_overlap 2313082 2313090, overlap 2313090 GCTATCGCTATTTAA TCTAAAAAAAGCGCC GAAA GGCGCTTTTTTTATT ATTGGATGAAAAGAA TERM 2549 2313082 - 2313111 + T 100 -16.7 -3.67597 | opp_overlap 2313080 2313090, overlap 2313090 TATCGCTATTTAATC TAAAAAAAGCGCC GAAA GGCGCTTTTTTTA TTATTGGATGAAAAG TERM 2550 2313103 - 2313090 - T 100 -9.5 -5.53288 | opp_overlap 2313090 2313082, overlap 2313080 TTTAATCTAAAAAAA GCGCC GAAA GGCGC TTTTTTTATTATTGG TERM 2551 2313090 - 2313103 + T 100 -9.5 -5.95946 | opp_overlap 2313080 2313090, overlap 2313082 TTTAATCTAAAAAAA GCGCC GAAA GGCGC TTTTTTTATTATTGG Shal_1924 2313546 - 2313136 - | lactoylglutathione lyase TERM 2552 2313845 - 2313872 + r 89 -12.2 -3.5697 | gap 1, opp_overlap 2313851, overlap 2313851 TAAGCATAGGGATAG CAAAAA-GCCGCT AAT AGCGGCTTTTTTG TGTTTGTCACTCTAT TERM 2553 2313851 - 2313865 + r 100 -11.4 -5.59879 | opp_overlap 2313851, overlap 2313845 TAGGGATAGCAAAAA GCCGCT AAT AGCGGC TTTTTTGTGTTTGTC TERM 2554 2313865 - 2313851 - R 95 -11.4 -4.81551 | opp_overlap 2313851 2313845 TAGGGATAGCAAAAA GCCGCT AAT AGCGGC TTTTTTGTGTTTGTC Shal_1925 2314605 - 2313964 - | endonuclease III TERM 2555 2314432 - 2314459 + g 86 -12 -3.63515 | CGCTTGTGCCGTGTT GGCGACCGGAAA GAGT TTATCGGTCGCC TTATTGACACTGACA TERM 2556 2314668 - 2314681 + r 76 -6.7 -4.37092 | CGTCGTTACTATCTA CTAGC TCAC GCTAG TTTTATAACGCCGCT Shal_1926 2315421 - 2314726 - | SoxR-reducing system protein RsxE Shal_1927 2316041 - 2315418 - | electron transport complex protein RnfG TERM 2557 2315547 - 2315561 + g 79 -4.2 -5.09426 | opp_overlap 2315542 ACCAGTAAATTGGTC GATGTC ACC GCCATC TTTTTTAACGTTCCA TERM 2558 2315751 - 2315768 + g 75 -11.3 -3.06183 | opp_overlap 2315743 AATATTACCGTTATA GCCATCG GGGG CGATGGC TTCAATCGCGATCGC Shal_1928 2317124 - 2316072 - | electron transport complex, RnfABCDGE type, D subunit Shal_1929 2319560 - 2317128 - | electron transport complex protein RnfC TERM 2559 2317179 - 2317199 + g 72 -3.1 -5.09173 | overlap 2317181 TGCTTTTGCCTTGGC GACTGCAGC AGC GATGCGGGC TTTTTTAGCATCTTC TERM 2560 2318871 - 2318915 + g 75 -6.3 -4.46675 | opp_overlap 2318885, overlap 2318867 GCTATCTGTTGCTAA CTCGCTGCGATTAAGCGCATG TTG CATGGCCTCAATCGCTTCGGG TTTGTTATCTTCGAT Shal_1930 2320123 - 2319554 - | electron transport complex, RnfABCDGE type, B subunit Shal_1931 2320704 - 2320126 - | Na(+)-translocating NADH-quinone reductase subunit E TERM 2561 2320489 - 2320477 - G 71 -3.3 -4.74518 | AATCACTAAAATAAA GCTCA TCG TGCGC AGATAGCCTAAGTCA TERM 2562 2320686 - 2320658 - G 84 -10.5 -3.95022 | TTTACTAATACGAAA TTATTGACTAGCA CTG TGCCAATCAATAA CAGGAGATATTCACT Shal_1932 2322729 - 2320813 - | diguanylate cyclase/phosphodiesterase Shal_1933 2324560 - 2326563 + | excinuclease ABC subunit B TERM 2563 2326640 - 2326666 + T 100 -13.8 -5.30686 | opp_overlap 2326640 TTAAGACGTTAAAAA GGAGAGCAAAGT AAA ACTTAGCTCTCC TTTTTTATGCATCTT TERM 2564 2326666 - 2326640 - T 100 -13.8 -4.66953 | opp_overlap 2326640 TTAAGACGTTAAAAA GGAGAGCAAAGT AAA ACTTAGCTCTCC TTTTTTATGCATCTT Shal_1934 2327297 - 2326695 - | rhomboid family protein TERM 2565 2327263 - 2327281 + g 83 -6.6 -5.0925 | opp_overlap 2327263, overlap 2327265 ATAAGCGCAAATGTA TAGGGGCT GTT GGCCCCCA TTTTTAGTTTTCGCA Shal_1935 2327974 - 2327285 - | exsB protein TERM 2566 2328185 - 2328197 + G 70 -9.1 -3.4617 | overlap 2328187 GTTTTTGTTAGACTT CAGGG CTG CCCTG TTGGTTGCTCTTGGT TERM 2567 2328332 - 2328349 + G 72 -8.5 -3.72695 | opp_overlap 2328323 GAAGAATTGGTTAAT GCCTTTA AAGA TAAAGGC TTTAATGCAAAACAT Shal_1936 2328101 - 2328769 + | radical SAM domain-containing protein TERM 2568 2328822 - 2328796 - T 83 -7.4 -4.7254 | gap 1, opp_overlap 2328796 2328791 2328821 ATGTTTTATGAAAAA GCCCTTG-GAT TTAATT ATCTCAAGGGC TTTTCTGTATCACTA TERM 2569 2328796 - 2328822 + T 81 -7.4 -4.61868 | gap 1, opp_overlap 2328796, overlap 2328791 2328821 ATGTTTTATGAAAAA GCCCTTG-GAT TTAATT ATCTCAAGGGC TTTTCTGTATCACTA Shal_1937 2329942 - 2328866 - | pyridoxal-5'-phosphate-dependent protein beta subunit TERM 2570 2331580 - 2331615 + G 73 -7.6 -4.08689 | overlap 2331572 ACAAAGCGGCGCCAC GGCTTTTCGTTTAGCG AATA CGCTCAATGAAGAGGC TTTGGTTATTCGCTG Shal_1938 2331299 - 2331790 + | hypothetical protein Shal_1939 2331865 - 2332152 + | hypothetical protein Shal_1940 2332279 - 2334453 + | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) Shal_1941 2334940 - 2334461 - | hypothetical protein Shal_1942 2335525 - 2334950 - | hypothetical protein Shal_1943 2335687 - 2336277 + | Smr protein/MutS2 TERM 2571 2336292 - 2336329 + T 100 -12.3 -4.55287 | gap 1, opp_overlap 2336297 2336298, overlap 2336298 ATCTTTTTCAGATTT TAAAAGGCCATCTTA-CC CTA GGCTAAGATGGCTTTTTG TTTTGTATCGCTAAC TERM 2572 2336324 - 2336297 - T 77 -7.8 -4.16943 | gap 1, opp_overlap 2336292 2336298, overlap 2336298 TTTCAGATTTTAAAA GGCCATCTTA-CC CTA GGCTAAGATGGCT TTTTGTTTTGTATCG TERM 2573 2336298 - 2336323 + T 100 -11.3 -5.58522 | gap 1, opp_overlap 2336298 2336297, overlap 2336292 TTCAGATTTTAAAAG GCCATCTTA-CC CTA GGCTAAGATGGC TTTTTGTTTTGTATC TERM 2574 2336323 - 2336298 - T 82 -11.3 -3.09844 | gap 1, opp_overlap 2336292 2336298, overlap 2336297 TTCAGATTTTAAAAG GCCATCTTA-CC CTA GGCTAAGATGGC TTTTTGTTTTGTATC Shal_1944 2336540 - 2336361 - | hypothetical protein TERM 2575 2336635 - 2336624 - g 76 -4.4 -4.96848 | GCTCCGATACAAAAA CAAG AATA CTTG ATGCTGCGGAAAAAT Shal_1945 2336584 - 2337246 + | TetR family transcriptional regulator TERM 2576 2339374 - 2339363 - g 73 -4.4 -4.82901 | CGGCCTGTATAAAAA GCTT AAGC AAGC ACAAAGGGAGGGGAG Shal_1946 2337252 - 2339534 + | acyl-CoA dehydrogenase TERM 2577 2339968 - 2339931 - T 79 -11.5 -2.57136 | opp_overlap 2339941, overlap 2339941 GTATGAATCACGAAG TATAAAAAAAGGTACGC AATT GCGTACCTTTTTTATTA GCTAACCAACCACTT TERM 2578 2339958 - 2339941 - T 100 -11.3 -5.71983 | opp_overlap 2339941, overlap 2339931 CGAAGTATAAAAAAA GGTACGC AATT GCGTACC TTTTTTATTAGCTAA TERM 2579 2339941 - 2339958 + T 100 -11.3 -5.4833 | opp_overlap 2339941 2339931 CGAAGTATAAAAAAA GGTACGC AATT GCGTACC TTTTTTATTAGCTAA Shal_1947 2341424 - 2339988 - | pyruvate kinase TERM 2580 2340083 - 2340107 + g 72 -4.9 -4.56597 | overlap 2340084 CTTTTACAAGGTAAC CCGCTTGAGAC AGA GTCTCTAGTGC TTTTTGAGCGACAGC TERM 2581 2341590 - 2341560 - R 80 -6.3 -4.8143 | gap 1, overlap 2341562 CCAATAATTTAAAAA TG-GGCAATCCAAC CTAG GTTAAATTGCCGCA AATTATGTAGAAAGT Shal_1948 2342463 - 2341609 - | DNA-binding transcriptional regulator HexR Shal_1949 2342777 - 2344249 + | glucose-6-phosphate 1-dehydrogenase Shal_1950 2344260 - 2344964 + | 6-phosphogluconolactonase Shal_1951 2344974 - 2346800 + | phosphogluconate dehydratase Shal_1952 2346822 - 2347469 + | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase TERM 2582 2347491 - 2347506 + T 100 -9 -5.72616 | opp_overlap 2347491 CTTTCTAATAAAAAA GCTACC CTTG GGTAGC TTTTTTTATGTCCAT TERM 2583 2347506 - 2347491 - T 95 -9 -5.4505 | opp_overlap 2347491 CTTTCTAATAAAAAA GCTACC CTTG GGTAGC TTTTTTTATGTCCAT Shal_1953 2348141 - 2347560 - | ecotin precursor TERM 2584 2348182 - 2348161 - H 86 -4.5 -5.45802 | opp_overlap 2348161 TCTCCAAAATAAAAA GGTATTG TCTGTGTT CAATACC TCTATAAACGCTGCG Shal_1954 2348562 - 2349581 + | cation diffusion facilitator family transporter Shal_1955 2349608 - 2350027 + | MarR family transcriptional regulator Shal_1956 2350361 - 2351980 + | sulfatase Shal_1957 2352073 - 2353125 + | diguanylate cyclase TERM 2585 2353227 - 2353202 - T 100 -16.3 -3.97368 | opp_overlap 2353202 GTGTTAATTGAGAAA GGCCGTTAAGA TAAA TCTTAACGGCC TTTTTGTTTGTGCGC TERM 2586 2353202 - 2353227 + T 100 -16.3 -5.38054 | opp_overlap 2353202 GTGTTAATTGAGAAA GGCCGTTAAGA TAAA TCTTAACGGCC TTTTTGTTTGTGCGC Shal_1958 2355951 - 2353249 - | GCN5-related N-acetyltransferase Shal_1960 2356544 - 2357206 + | GntR family transcriptional regulator TERM 2587 2357486 - 2357506 + G 79 -9.8 -3.7732 | opp_overlap 2357491 TGCCCGATCTGGGCA TGACATCG CTAAA CGATGTCA TTGTTGATGTGCAGC Shal_1961 2357314 - 2358192 + | 2-methylisocitrate lyase Shal_1962 2358371 - 2359510 + | 2-methylcitrate synthase/citrate synthase II TERM 2588 2359602 - 2359576 - f 87 -12.4 -3.37975 | overlap 2359555 ACCTAGGACTTAGAA TTTAGGACCTAG GAC CTAGGACCTAAA AGCGAAGCGCCCTCG Shal_1963 2359812 - 2362445 + | aconitate hydratase TERM 2589 2362455 - 2362491 + F 72 -4.5 -4.83032 | overlap 2362458 ACATGAGCCATCAGC GGATAAAGAGTAGAGTT TTA ATCTTTGCTCTTTAATC TTTTCTCTTTAATCT Shal_1964 2362693 - 2363928 + | putative AcnD-accessory protein PrpF TERM 2590 2364107 - 2364078 - f 100 -11.5 -5.54079 | opp_overlap 2364082 2364085 GCAAAAAGCAAAAAA CTAAGAACCCAGC ATAA ACTGGGTTCTTTG CATTAAAAGCGATAA TERM 2591 2364082 - 2364103 + F 80 -10.2 -3.75153 | opp_overlap 2364078, overlap 2364085 AAAGCAAAAAACTAA GAACCCAG CATAAA CTGGGTTC TTTGCATTAAAAGCG TERM 2592 2364156 - 2364195 + F 100 -18.1 -3.31983 | opp_overlap 2364131 2364165 CGTTTGCTACGCAGA GGGCACGAAGAAAAGCT TAGGGT GGCTTTTCTTCGTGCTC TTCGTGTCCTCTGTG Shal_1965 2364469 - 2364771 + | hypothetical protein Shal_1966 2365168 - 2365962 + | methyltransferase type 11 TERM 2593 2365991 - 2366005 + G 77 -7.2 -4.43221 | CTATCAAGCCGATGC TCAACT CCA AGTTGA TTTTATCGCATATTT TERM 2594 2366200 - 2366215 + G 74 -10.4 -3.28712 | TCATTGAGCTCTATT GGCAGC ACTC GCTGCC TTATAACGGCGAGAA Shal_1967 2365959 - 2367083 + | HNH nuclease TERM 2595 2367062 - 2367098 + T 89 -10.3 -4.30933 | opp_overlap 2367070, overlap 2367070 GAACGCCTTATCGTC GGGAAAAACGGTCATTT ATT AAATGACCGTTATTATC TTTATTGCATTTGTA TERM 2596 2367090 - 2367070 - T 100 -12.7 -4.57073 | opp_overlap 2367070 2367062 TATCGTCGGGAAAAA CGGTCATTT ATT AAATGACCG TTATTATCTTTATTG TERM 2597 2367070 - 2367090 + T 93 -12.7 -4.09276 | opp_overlap 2367070, overlap 2367062 TATCGTCGGGAAAAA CGGTCATTT ATT AAATGACCG TTATTATCTTTATTG Shal_1968 2369559 - 2367100 - | hypothetical protein Shal_1969 2370954 - 2369896 - | LuxR family transcriptional regulator TERM 2598 2370088 - 2370116 + g 76 -5.2 -4.74103 | opp_overlap 2370088 AAAACTGTACACTAA CTGCCACCACTG GGGGA TAGTGGCTGCAG TTTTTAAGTTCAGCA Shal_1970 2371166 - 2372146 + | hypothetical protein TERM 2599 2372188 - 2372206 + T 83 -5.3 -5.20534 | gap 1, opp_overlap 2372188, overlap 2372188 2372189 ATATTTAGAAAAACT C-CCGAAC CTAT GTTCGGCG TTTTTGTTACTTGCT TERM 2600 2372285 - 2372298 + T 71 -6.7 -4.09685 | opp_overlap 2372258 2372285 TAATTTAGTGTAGAA CCACA TAAA TGTGG TTTTGAGGGCTGGGG TERM 2601 2372491 - 2372507 + T 88 -3 -5.88471 | overlap 2372493 GGGATCTATTCGGTA TAGGTA GACGA TACCTG TTTTTTTTACTACTC Shal_1971 2373093 - 2372524 - | hypothetical protein Shal_1972 2373374 - 2373156 - | signal transduction protein Shal_1973 2374240 - 2373647 - | TetR family transcriptional regulator Shal_1974 2374460 - 2375581 + | RND family efflux transporter MFP subunit TERM 2602 2375979 - 2375991 + G 88 -7.7 -4.96762 | GTGCCGGGCCCTCGA TCGTC AAT GACGA TTTTTCTGATGTCTA Shal_1975 2375585 - 2378638 + | acriflavin resistance protein TERM 2603 2378663 - 2378700 + T 100 -8.5 -5.71712 | opp_overlap 2378665, overlap 2378665 TAGCTATAGAAACAA AAGGCCGACCATTGA GAGGTTAA TCAATGTTCGGCCTG TTTTTTTATGTGCAA TERM 2604 2378665 - 2378698 + T 91 -11.1 -4.50122 | opp_overlap 2378665, overlap 2378663 GCTATAGAAACAAAA GGCCGACCATTGA GAGGTTAA TCAATGTTCGGCC TGTTTTTTTATGTGC TERM 2605 2378698 - 2378665 - T 93 -11.1 -5.05113 | opp_overlap 2378663 2378665 GCTATAGAAACAAAA GGCCGACCATTGA GAGGTTAA TCAATGTTCGGCC TGTTTTTTTATGTGC Shal_1976 2381013 - 2378728 - | vault protein inter-alpha-trypsin subunit TERM 2606 2378998 - 2378976 - G 71 -3.4 -4.87626 | CTTCAAGATCAAAAA TATCGAACTC GCT GAGCCCCATA TGATTACTGGGTGTG TERM 2607 2380971 - 2380988 + g 78 -6.3 -4.61633 | opp_overlap 2380971 CCGCCTTTAAAGCAA CATCTTC GCCT GAGGATG TTTTTAAACCTATCT Shal_1977 2381438 - 2381016 - | MerR family transcriptional regulator Shal_1978 2381619 - 2381915 + | hypothetical protein TERM 2608 2382145 - 2382158 + T 93 -9.5 -4.6856 | opp_overlap 2382145 ACTTGCAATAAAAAA GCCGC TAAT GCGGC TTTTTAGGCTATTTA TERM 2609 2382158 - 2382145 - T 100 -9.5 -5.45652 | opp_overlap 2382145 ACTTGCAATAAAAAA GCCGC TAAT GCGGC TTTTTAGGCTATTTA Shal_1979 2384032 - 2382212 - | peptidase S8 and S53 subtilisin kexin sedolisin TERM 2610 2382746 - 2382733 - G 70 -9.5 -3.10796 | opp_overlap 2382731 TTGCAGCATGTAAGA CGCCG CGAT CGGCG AGTGTGGTACCTAGC TERM 2611 2382988 - 2383008 + g 72 -9 -3.57263 | opp_overlap 2383001 CTAGCCCGGAGTTTT CCATTGCC GAAGA GGCGATGG TTTGCCCGTCCGCAT TERM 2612 2383563 - 2383593 + g 77 -11.2 -3.16742 | overlap 2383566 CCATTTTCATCCCAG TTTCCGGTGCCAAT GTC ATTGTCACCGGTAA TTGATGACCATTCAA TERM 2613 2383566 - 2383590 + g 82 -12.9 -2.78395 | overlap 2383563 TTTTCATCCCAGTTT CCGGTGCCAAT GTC ATTGTCACCGG TAATTGATGACCATT TERM 2614 2383636 - 2383611 - G 72 -6.1 -4.21908 | overlap 2383622 GATGACCATTCAAAA TCGGGATTAGA GCGA TCGAGTCCCGA GTCAATCACACAAAC TERM 2615 2384166 - 2384184 + r 79 -9.6 -3.65199 | opp_overlap 2384168 TTTAACTGGGTTAAC TATCGGGG AAT CCCTGATA TTTACCTCGGCACTT Shal_1980 2385058 - 2384390 - | two component LuxR family transcriptional regulator Shal_1981 2388257 - 2385051 - | histidine kinase TERM 2616 2385799 - 2385811 + g 70 -4.7 -4.4009 | overlap 2385800 GTATGTTTCTGCCAA CGCGC AAG GCGCA TTTTATGGAATGCAA TERM 2617 2388410 - 2388392 - H 83 -9.6 -3.85698 | opp_overlap 2388392 TTCCTGTTTGAGAAA TATCAGGG TTT CCCCGATA TTTCACTCGATAATT Shal_1982 2388507 - 2389136 + | hypothetical protein TERM 2618 2390258 - 2390229 - g 77 -10.9 -3.12847 | gap 1, opp_overlap 2390238, overlap 2390234 2390238 AAGGGGGATATCCAA CT-CAACAAACACC TTT GGTGTCTGTTGCAG AATATTGGAATGAGG TERM 2619 2390252 - 2390234 - g 71 -9.6 -3.20164 | opp_overlap 2390238, overlap 2390229 2390238 GGATATCCAACTCAA CAAACACC TTT GGTGTCTG TTGCAGAATATTGGA TERM 2620 2390248 - 2390238 - g 74 -6.8 -4.25681 | opp_overlap 2390238, overlap 2390234 2390229 ATCCAACTCAACAAA CACC TTT GGTG TCTGTTGCAGAATAT Shal_1983 2389136 - 2391577 + | hypothetical protein TERM 2621 2391598 - 2391621 + T 100 -16.8 -3.28261 | opp_overlap 2391595 TGCTTTAATCTAGTC GCCACTCGAG AGTA CTCGAGTGGC TTAATCTGCAATTCT Shal_1984 2392949 - 2392284 - | glutathione S-transferase domain-containing protein Shal_1985 2393568 - 2393011 - | NAD(P)H dehydrogenase (quinone) TERM 2622 2393668 - 2393652 - H 70 -9.5 -2.73781 | opp_overlap 2393642 2393641 2393651 2393650 2393648, overlap 2393651 TTAATGCAAATCAAT TTTGCGT TTT ACGCAAA GGTCTTGTTTATGCA TERM 2623 2394885 - 2394875 - g 71 -6.8 -4.14472 | opp_overlap 2394875 CGAAGATGGGCAAAA GCTG TCT CAGC TTAGTCAAGACTTTA Shal_1986 2394606 - 2394956 + | phasin family protein TERM 2624 2394967 - 2395013 + F 73 -2.3 -5.28166 | gap 1, overlap 2394968 2394969 TGTAAAGCATAATAG TTTGGCGCGCTGTTTGCTCAAT AAAT ACTGAGCAAG-AGTGCGTCACC TTTTTATTCGTTTTA TERM 2625 2395383 - 2395364 - g 89 -9.4 -4.56113 | opp_overlap 2395362 AATACATCAAAGAAA GTTACAAG CTGG CTTGTAAC AATGTTCAAAGCTCA Shal_1987 2395051 - 2396808 + | poly(R)-hydroxyalkanoic acid synthase, class I Shal_1988 2396798 - 2397199 + | dehydratase Shal_1989 2397820 - 2398038 + | signal transduction protein TERM 2626 2398306 - 2398296 - f 71 -6.8 -4.12188 | opp_overlap 2398296 TCACCACGGCGAAAA TGGC GAA GCCA TGTGCTAATAAGCGA Shal_1990 2398726 - 2399724 + | hypothetical protein Shal_1991 2401618 - 2399933 - | glutathione synthase TERM 2627 2402074 - 2402087 + H 73 -6.7 -4.1774 | overlap 2402072 CATCTACGGATCTGC CAGCA AACT TGCTG TTGTTTCTAATTCTT Shal_1992 2402239 - 2402655 + | hypothetical protein TERM 2628 2402730 - 2402755 + T 100 -9.7 -5.41746 | opp_overlap 2402730, overlap 2402733 TAGTGGTCAGCAAAA CGGGCCCCTTA GTGT TAAGGGGCATG TTTTTTTAGAGGGTT TERM 2629 2402755 - 2402730 - T 76 -7.5 -4.2558 | opp_overlap 2402730 2402733 TAGTGGTCAGCAAAA CGGGCCCCTTA GTGT TAAGGGGCATG TTTTTTTAGAGGGTT TERM 2630 2402733 - 2402752 + T 83 -12.2 -3.19966 | opp_overlap 2402730, overlap 2402730 TGGTCAGCAAAACGG GCCCCTTA GTGT TAAGGGGC ATGTTTTTTTAGAGG Shal_1993 2403886 - 2402804 - | hypothetical protein TERM 2631 2404776 - 2404793 + H 70 -5.6 -4.32067 | opp_overlap 2404776, overlap 2404772 GATAGATGGTATATA GGTCAA TAGGAT TTGACC TTATTTTATAACATG TERM 2632 2405110 - 2405093 - g 83 -4.1 -5.35354 | gap 1, overlap 2405094 GACATAATTAAAAAA GGCTCGCC ATT AGCGA-CC ATAGTGTTAAGTCGC TERM 2633 2405347 - 2405373 + G 76 -8.1 -4.06687 | opp_overlap 2405346 2405344 2405347 AGTTAAACAACAGAC CCAGCATCAAA AGCTG TTTGATGATGG TTATTTATCGACGCT TERM 2634 2405736 - 2405748 + G 78 -6.2 -4.67982 | AGTTACTGCTTCCGA CCCG AAGCG CGGG TTTTGTTAAATCAGG Shal_1994 2404817 - 2406064 + | toxin secretion, membrane fusion protein TERM 2635 2406583 - 2406550 - T 73 -10.3 -2.87003 | gap 1, overlap 2406547 TCAGCAACAAGATGA GCGCCAGCAGATGCGA TTA TCGCAGCTG-TGGAGC AAAATGACGGGGTTA TERM 2636 2408338 - 2408301 - T 81 -6.9 -4.68593 | TTCATTAGTTAAAAA CAAGGACGCGGCAAC TTTAGCGG GAAACCGCGCCCTTG GTCAGTCGCTTAAGG TERM 2637 2408914 - 2408932 + T 79 -5.2 -5.11033 | overlap 2408917 TATAACATTGTTTTT CACCGTGG TAA CCATGTTG TTTTTTAGCCTTATA TERM 2638 2408917 - 2408929 + T 73 -5.5 -4.63993 | overlap 2408914 AACATTGTTTTTCAC CGTGG TAA CCATG TTGTTTTTTAGCCTT Shal_1998 2410288 - 2409470 - | transposase IS116/IS110/IS902 family protein TERM 2639 2409883 - 2409898 + g 75 -3.2 -5.2189 | overlap 2409877 2409884 GCAAAATCTTTCCTG ATGGAG TTTG CTCCAA TTTTTTCCTGATTAG TERM 2640 2411187 - 2411175 - g 86 -9.1 -4.53163 | opp_overlap 2411174 2411175 TCAGAGATCACAAAA CCTGC TTG GCAGG CTTAATATACCTCAG Shal_1999 2410372 - 2411352 + | hypothetical protein TERM 2641 2411413 - 2411398 - T 70 -9 -3.12999 | opp_overlap 2411396 2411398 GCATTGCATAGTTAA CCGAAC TCAA GTTCGG TATTTCAGCTGCTTG TERM 2642 2411398 - 2411413 + T 72 -9 -3.39732 | opp_overlap 2411398, overlap 2411396 GCATTGCATAGTTAA CCGAAC TCAA GTTCGG TATTTCAGCTGCTTG TERM 2643 2411643 - 2411666 + T 93 -9.6 -5.06816 | opp_overlap 2411644, overlap 2411644 TGAGGCGATTAAACA AGATAACCCC TTTC GGGGTTATCA TTTTTATTCAGGCGT TERM 2644 2411644 - 2411665 + T 95 -13.1 -3.63367 | opp_overlap 2411644, overlap 2411643 GAGGCGATTAAACAA GATAACCCC TTTC GGGGTTATC ATTTTTATTCAGGCG TERM 2645 2411665 - 2411644 - T 100 -13.1 -4.00756 | opp_overlap 2411643 2411644 GAGGCGATTAAACAA GATAACCCC TTTC GGGGTTATC ATTTTTATTCAGGCG Shal_2000 2412061 - 2411720 - | hypothetical protein Shal_2001 2412426 - 2415467 + | UvrD/REP helicase TERM 2646 2415466 - 2415512 + T 83 -9 -4.0492 | gap 1, opp_overlap 2415479, overlap 2415468 TGGGAACCGCGGCTT GA-TTGAGGCATAACTAAACG TTGATT CGTTTAGTTATGCGCCAACTC TTTATCTGCCAATTA TERM 2647 2415468 - 2415509 + T 81 -11.8 -2.76418 | opp_overlap 2415479, overlap 2415466 GGAACCGCGGCTTGA TTGAGGCATAACTAAACG TTGATT CGTTTAGTTATGCGCCAA CTCTTTATCTGCCAA Shal_2002 2415748 - 2415479 - | hypothetical protein TERM 2648 2416442 - 2416406 - g 73 -11 -2.57067 | opp_overlap 2416416, overlap 2416402 2416397 2416416 TGAAGAGTTAATCGA GCGATTAGAACGGC TGCAGTATG GCCGTTGTAATCGC ACCATCAAGCGGGCG TERM 2649 2417577 - 2417554 - g 72 -5.4 -4.39426 | gap 1, overlap 2417557 2417558 TATATGCCGACAAAA TGAC-TTTTGC AAT GCAAAAAGCCA TAGATGAGTCTTCCG Shal_2003 2415867 - 2417861 + | excinuclease ABC subunit B TERM 2650 2418306 - 2418286 - g 74 -6.9 -4.35189 | AACCCAAACAAAGAA GAGATCAGT AAC ACCAATCTC CAGTTTCAGTTCAGT Shal_2004 2418058 - 2418903 + | phospholipase A1 Shal_2005 2418903 - 2419556 + | hexapaptide repeat-containing transferase TERM 2651 2419595 - 2419554 - T 100 -17 -4.12738 | gap 1, opp_overlap 2419556 2419561, overlap 2419561 CTAGAGCAAATGAAA TAA-AAAATGGCGCTAACC ACTGG GGTTAGCGCCATTTTATTA TGGGGTTTACGGGGT TERM 2652 2419556 - 2419592 + T 100 -16.8 -3.39668 | opp_overlap 2419554 2419561, overlap 2419561 AGAGCAAATGAAATA AAAAATGGCGCTAACC ACTGG GGTTAGCGCCATTTTA TTATGGGGTTTACGG TERM 2653 2419561 - 2419587 + T 100 -16.7 -4.78839 | opp_overlap 2419561 2419554, overlap 2419556 AAATGAAATAAAAAA TGGCGCTAACC ACTGG GGTTAGCGCCA TTTTATTATGGGGTT TERM 2654 2419587 - 2419561 - T 100 -16.7 -5.74086 | opp_overlap 2419556 2419561, overlap 2419554 AAATGAAATAAAAAA TGGCGCTAACC ACTGG GGTTAGCGCCA TTTTATTATGGGGTT Shal_2006 2421252 - 2419642 - | ABC transporter related Shal_2007 2422504 - 2421515 - | LacI family transcription regulator TERM 2655 2422627 - 2422658 + H 80 -8.2 -4.42386 | opp_overlap 2422625 2422627 AATGTCAATGTAACA GCAATAAAATGTTA TCGA TGTCATTTTATTGC TTTTCTAAGTACAAA Shal_2008 2422839 - 2423873 + | alcohol dehydrogenase Shal_2009 2423877 - 2425424 + | xylulokinase TERM 2656 2425465 - 2425501 + G 71 -9.6 -3.14132 | gap 1, overlap 2425466 2425471 2425476 ATTAAAAAGTCTTTC G-GTGAGGTTAATGCGC TTAA GCACATTAACTTCACTC TTAATGCGGGCGAAA TERM 2657 2425466 - 2425499 + G 83 -13.3 -3.13403 | overlap 2425465 2425471 2425476 TTAAAAAGTCTTTCG GTGAGGTTAATGCGC TTAA GCACATTAACTTCAC TCTTAATGCGGGCGA TERM 2658 2426246 - 2426227 - g 88 -3.6 -5.63374 | TTAACATCAAAAAAA TTCAACGA TATC TCGTTCAA GGTCAATAAAGGCGA Shal_2010 2425417 - 2426901 + | ABC transporter related TERM 2659 2427282 - 2427321 + G 74 -5.6 -4.59853 | TTCGCCAATCCTTCT GCCGCTAATGGTAGCTAT CTGT ATCGGTGCCATCTGCGGC TTTTTGAACGGTTAC Shal_2011 2426911 - 2427948 + | monosaccharide-transporting ATPase TERM 2660 2428428 - 2428440 + G 72 -6.3 -4.30719 | TGTTCAAGGTGGTTA CTTAG AAG CTAAG TTTGTTATGGAGCAG Shal_2012 2428018 - 2429019 + | periplasmic binding protein/LacI transcriptional regulator TERM 2661 2429067 - 2429045 - T 76 -9.1 -3.65827 | opp_overlap 2429045 TAATCCTTAGTTAAA CGAGCGTAG AGTTA CTTCGCTCG TTTATAAGCTGAGTC TERM 2662 2429045 - 2429067 + T 79 -9.1 -3.89822 | opp_overlap 2429045 TAATCCTTAGTTAAA CGAGCGTAG AGTTA CTTCGCTCG TTTATAAGCTGAGTC Shal_2013 2429593 - 2429069 - | YdaE TERM 2663 2430433 - 2430422 - g 71 -7.2 -4.11216 | overlap 2430423 CTCTTATGCGCAAAA CCGC CGCA GCGG TGGTAAGCGGCCAGC Shal_2014 2429988 - 2430485 + | hypothetical protein TERM 2664 2430520 - 2430544 + F 100 -15.1 -5.31456 | opp_overlap 2430518 GACGCTATATACATC GGGAGACTTCA GTT TGAGGTCTCCC TTTTTTATGGATTGC TERM 2665 2432626 - 2432639 + F 100 -8.1 -5.64274 | AAAGTTATACGTAGG CCAGC GAAA GCTGG TTTTTTTGTGCCTGA Shal_2015 2433000 - 2433377 + | hypothetical protein TERM 2666 2433778 - 2433810 + T 100 -13.6 -3.92075 | opp_overlap 2433783, overlap 2433783 ATAAGACTGGTAAAT AAAAAGGCCAACTC CGGTA GAGTTGGCCTTTTG TTTGTAACTAGCGCT TERM 2667 2433783 - 2433805 + T 100 -13.5 -5.0065 | opp_overlap 2433783, overlap 2433778 ACTGGTAAATAAAAA GGCCAACTC CGGTA GAGTTGGCC TTTTGTTTGTAACTA TERM 2668 2433805 - 2433783 - T 100 -14.2 -5.27938 | opp_overlap 2433778 2433783 ACTGGTAAATAAAAA GGCCAACTCC GGT AGAGTTGGCC TTTTGTTTGTAACTA Shal_2016 2435217 - 2433859 - | MATE efflux family protein TERM 2669 2435160 - 2435178 + g 74 -10.4 -3.18467 | GTGTTACTTGAGCGA TTAGCACT GGC AGTGCTAA TTGAATTAAGCGTTT TERM 2670 2435828 - 2435851 + G 73 -7.4 -4.11692 | AGCGATAGTTGATAC CGTTGAGCGA GTAC TCGCTAAGCG TTTTGAAAATCAATA Shal_2017 2435250 - 2435867 + | riboflavin synthase subunit alpha Shal_2018 2436120 - 2435920 - | hypothetical protein Shal_2019 2436875 - 2436123 - | short-chain dehydrogenase/reductase SDR TERM 2671 2438281 - 2438263 - g 76 -8.9 -3.79043 | opp_overlap 2438261 TACCAGGAAGTTAAA GGTCCAT TAATG ATGGACC GAGTATTGTGGGAAC Shal_2020 2437381 - 2439309 + | threonyl-tRNA synthetase Shal_2021 2439427 - 2439855 + | translation initiation factor IF-3 Shal_2022 2439942 - 2440136 + | 50S ribosomal protein L35 Shal_2023 2440155 - 2440514 + | 50S ribosomal protein L20 TERM 2672 2440507 - 2440491 - T 71 -5.1 -4.62336 | ACTTTAGTTGAAAAA GCAAAAG ACG CTTTAGC TAAGTAATTAGTTTA TERM 2673 2440538 - 2440555 + T 100 -12.7 -5.28176 | opp_overlap 2440538 GAATCTTTTGAAAAA GGGAGCC CTAG GGCTCCC TTTTTTATGCCTGAA TERM 2674 2440555 - 2440538 - T 100 -12.7 -4.58283 | opp_overlap 2440538 GAATCTTTTGAAAAA GGGAGCC CTAG GGCTCCC TTTTTTATGCCTGAA TERM 2675 2440794 - 2440779 - T 100 -10.4 -5.65177 | opp_overlap 2440779 ATAGCGACAAAAAAA GCAGGC TAAT GCCTGC TTTTTAACGTTGCCG TERM 2676 2440779 - 2440794 + T 93 -10.4 -4.66833 | opp_overlap 2440779 ATAGCGACAAAAAAA GCAGGC TAAT GCCTGC TTTTTAACGTTGCCG Shal_2024 2441780 - 2440827 - | thioredoxin reductase Shal_2025 2442071 - 2443198 + | peptidase M14 carboxypeptidase A TERM 2677 2443318 - 2443292 - g 72 -10.2 -2.76249 | overlap 2443283 TAAAGAGTGTAATCA TTGTAAGGCGAA GAT CTCGCCTGACAA TGAAAGCCTTAAAGT Shal_2026 2443227 - 2443544 + | hypothetical protein Shal_2027 2443541 - 2443822 + | hypothetical protein TERM 2678 2443839 - 2443877 + T 100 -14.7 -3.5518 | opp_overlap 2443844, overlap 2443844 TAAAACTTGAACGCA AAAAAGGGCCCCAAGCA TGCAC TGCTTAGGGCCCTTTTA TTATATCCATCTTCG TERM 2679 2443872 - 2443844 - T 100 -16.8 -5.15969 | opp_overlap 2443844 2443839 CTTGAACGCAAAAAA GGGCCCCAAGCA TGCAC TGCTTAGGGCCC TTTTATTATATCCAT TERM 2680 2443844 - 2443872 + T 100 -14.6 -4.84914 | opp_overlap 2443844, overlap 2443839 CTTGAACGCAAAAAA GGGCCCCAAGCA TGCAC TGCTTAGGGCCC TTTTATTATATCCAT Shal_2028 2444909 - 2443893 - | cytoplasmic asparaginase I TERM 2681 2444562 - 2444580 + g 79 -7.4 -4.40572 | opp_overlap 2444577, overlap 2444578 AAGGGGAATTTGCGA GCCAGTTA CGA TAACGGGC TTTTGTAAGCCTTGT TERM 2682 2445100 - 2445068 - R 100 -14.9 -3.64103 | opp_overlap 2445072, overlap 2445072 GATTGATAGGGGAAA TGAATGAGCCCAGCG ATT CGCTGGGCTCATTTG TTGGTCTACACCTGT TERM 2683 2445072 - 2445096 + r 100 -20.1 -4.29106 | opp_overlap 2445068 2445072 GATAGGGGAAATGAA TGAGCCCAGCG ATT CGCTGGGCTCA TTTGTTGGTCTACAC TERM 2684 2445096 - 2445072 - R 100 -20.1 -3.53745 | opp_overlap 2445072, overlap 2445068 GATAGGGGAAATGAA TGAGCCCAGCG ATT CGCTGGGCTCA TTTGTTGGTCTACAC Shal_2029 2446982 - 2445141 - | signal peptide peptidase SppA, 67K type TERM 2685 2447926 - 2447941 + G 80 -6.8 -4.67982 | opp_overlap 2447918 GACCATAGCCACCAG TGTGCC TCGC GGCGCA TTTTCTTGGGTGACA TERM 2686 2448289 - 2448301 + G 72 -5.5 -4.39571 | GATGGGCGCCGGACC TGCCG GAA TGGCA TTTTCAATTTATGCG Shal_2030 2447138 - 2449153 + | NADH:flavin oxidoreductase/NADH oxidase TERM 2687 2449205 - 2449230 + T 100 -10.5 -5.80817 | opp_overlap 2449205 AAGCATTTAAAAAAA CCTGATTATGC AGAT GCATAAACAGG TTTTTTTGTGTTACA TERM 2688 2449230 - 2449205 - T 100 -10.5 -5.49729 | opp_overlap 2449205 AAGCATTTAAAAAAA CCTGATTATGC AGAT GCATAAACAGG TTTTTTTGTGTTACA Shal_2031 2450432 - 2449299 - | phosphatidylserine decarboxylase-related Shal_2032 2451026 - 2451388 + | hypothetical protein TERM 2689 2451493 - 2451516 + T 100 -11.8 -5.34381 | opp_overlap 2451485 2451495 TTGACAAGTCTATTA GACCAGTAGT ATTT GCTACTGGTC TTTTTATTTCCATTT Shal_2033 2452482 - 2451592 - | hypothetical protein TERM 2690 2451711 - 2451698 - G 74 -3.8 -4.946 | ACCAAATACCAAAAA GAGC TTGTTT GCTC AGGTGTTTGGTTAAA TERM 2691 2452728 - 2452743 + r 70 -9 -3.16742 | opp_overlap 2452721 2452719 ACCAGATAGTCAGCA GCGACT AAGT AGTCGC TTGATACCAGTTAAG Shal_2034 2453167 - 2452784 - | ferredoxin Shal_2035 2454266 - 2453136 - | ribonucleotide-diphosphate reductase subunit beta TERM 2692 2454301 - 2454285 - R 72 -9.3 -3.29511 | opp_overlap 2454286, overlap 2454286 TCTATCTTCCGATAA TGGGGGC TAG GCCCCCT TAAATTAACGATTAA TERM 2693 2454300 - 2454286 - R 83 -12.8 -2.57564 | opp_overlap 2454286, overlap 2454285 CTATCTTCCGATAAT GGGGGC TAG GCCCCC TTAAATTAACGATTA TERM 2694 2454286 - 2454300 + r 85 -12.8 -3.18199 | opp_overlap 2454285 2454286 CTATCTTCCGATAAT GGGGGC TAG GCCCCC TTAAATTAACGATTA Shal_2036 2456626 - 2454338 - | ribonucleotide-diphosphate reductase subunit alpha TERM 2695 2456403 - 2456393 - G 74 -5.4 -4.59944 | ACGAGCAGAAAGAAA CTGA TAA TCAG GTGCTTCGGGGGAAA TERM 2696 2457008 - 2456965 - R 83 -6.2 -5.08601 | gap 2, opp_overlap 2456965, overlap 2456966 TTAGCCGAATAAAAA TGATCT-GTCAGATCGC-CA CTTAGT TGAGCGATCCGTCCAGATCA TTTTGAGTACTTTGG Shal_2037 2457773 - 2457096 - | HAD family hydrolase Shal_2038 2458476 - 2457766 - | 3-demethylubiquinone-9 3-methyltransferase TERM 2697 2458252 - 2458262 + g 74 -5.4 -4.652 | ATCAAGACCAGTTAC TTGG GCA CCAA TTTTTGCCATGCTTT TERM 2698 2458583 - 2458615 + H 78 -4.2 -5.23016 | gap 1, overlap 2458591 GTGGTCAATTATTGC GCCTATGC-CTTGAT TTTA ATCAAGTGAATTGGC TTTTTTCGGTTATTT Shal_2039 2458757 - 2461483 + | DNA gyrase, A subunit TERM 2699 2461513 - 2461551 + T 90 -13.4 -2.71011 | opp_overlap 2461513 2461524, overlap 2461524 CTGCGATTGATTAAT CTAATAAAAAAGGATGCC ATT GGCATCCTTTTTTATTTC TAATTAAAGACGAAT TERM 2700 2461551 - 2461513 - T 90 -13.4 -2.50816 | opp_overlap 2461513 2461524, overlap 2461524 CTGCGATTGATTAAT CTAATAAAAAAGGATGCC ATT GGCATCCTTTTTTATTTC TAATTAAAGACGAAT TERM 2701 2461540 - 2461524 - T 100 -12.3 -5.5074 | opp_overlap 2461524 2461513, overlap 2461513 TAATCTAATAAAAAA GGATGCC ATT GGCATCC TTTTTTATTTCTAAT TERM 2702 2461524 - 2461540 + T 100 -12.3 -5.73978 | opp_overlap 2461513 2461524, overlap 2461513 TAATCTAATAAAAAA GGATGCC ATT GGCATCC TTTTTTATTTCTAAT Shal_2040 2462768 - 2461611 - | beta-lactamase TERM 2703 2464016 - 2463994 - g 83 -9.2 -4.2349 | CTGTGAGATGGAAAA GCTCAACCTT GAG AAGGCTAAGC GACTTTATCAGTGTA Shal_2041 2463191 - 2464282 + | phosphoserine aminotransferase TERM 2704 2464314 - 2464337 + T 100 -12.6 -5.18355 | opp_overlap 2464314 TATTGAGACGAAAAA GCCGATAATA TTTC TATTATCGGC TTTTTAATTTTTAAG TERM 2705 2464337 - 2464314 - T 100 -12.6 -4.81551 | opp_overlap 2464314 TATTGAGACGAAAAA GCCGATAATA TTTC TATTATCGGC TTTTTAATTTTTAAG Shal_2042 2465620 - 2464385 - | aromatic amino acid aminotransferase TERM 2706 2465603 - 2465619 + g 81 -8.7 -4.46072 | TACCTTCTCTGTTGT TGGCTGT TTA GCAGCCA TTTATCTTTATTCAC Shal_2043 2466009 - 2467289 + | 3-phosphoshikimate 1-carboxyvinyltransferase TERM 2707 2467316 - 2467345 + F 83 -10.9 -3.72695 | GATAAACAGTGATAG CTTTCAGGTTAAT CGTG GTTAACCTGAAGG TTTGCTGAACCAAGT Shal_2044 2467469 - 2468161 + | cytidylate kinase TERM 2708 2468150 - 2468169 + F 75 -10 -3.20348 | opp_overlap 2468143 CATCAAAAGCTCCAA GTGCCTGC GTAA GCAGGTAC TTAACTATTCGTCAC Shal_2045 2468259 - 2469926 + | 30S ribosomal protein S1 Shal_2046 2469999 - 2470286 + | integration host factor, beta subunit TERM 2709 2470263 - 2470283 + F 84 -12.7 -2.99179 | overlap 2470260 AAAGAACTGCGCGAA CGTGTTGAT GCA ATCAACACG TAATTTACATTGTAT TERM 2710 2470319 - 2470304 - f 89 -10.4 -4.27617 | opp_overlap 2470304 TACATTGTATTAAAA GCCTCC ATTA GGAGGC TTTTTTATACCTAAA TERM 2711 2470304 - 2470319 + F 100 -10.4 -5.28176 | opp_overlap 2470304 TACATTGTATTAAAA GCCTCC ATTA GGAGGC TTTTTTATACCTAAA Shal_2047 2470397 - 2470729 + | hypothetical protein Shal_2048 2470731 - 2471891 + | hypothetical protein Shal_2049 2471958 - 2472653 + | orotidine 5'-phosphate decarboxylase Shal_2050 2472729 - 2473535 + | short chain dehydrogenase TERM 2712 2473759 - 2473747 - g 81 -3.3 -5.40474 | ATTGCGGCAAAAAAA CAAGC GCA GCTAG ATAAGGATAAACAGC TERM 2713 2473795 - 2473771 - g 76 -8.6 -4.12397 | CTAGATAAGGATAAA CAGCTAAACG AGCAA CGTTTTGCTG AGGCCTCTGAAAAAG Shal_2051 2473597 - 2474139 + | hypothetical protein TERM 2714 2474216 - 2474192 - f 100 -14.4 -3.86776 | opp_overlap 2474192 TAATGAAGCATTAAA GCCGTAACGA ACTCA TCGTTACGGC TTTTTTTATACATTC TERM 2715 2474192 - 2474216 + F 100 -14.4 -5.66684 | opp_overlap 2474192 TAATGAAGCATTAAA GCCGTAACGA ACTCA TCGTTACGGC TTTTTTTATACATTC TERM 2716 2474351 - 2474339 - f 71 -6.3 -4.26903 | opp_overlap 2474330 CCTACTTCATCAAAA CATCA GTT TGATG ATCTATAACGTGAGT Shal_2052 2474377 - 2474727 + | hypothetical protein Shal_2053 2475839 - 2474892 - | magnesium and cobalt transport protein CorA Shal_2054 2476171 - 2477931 + | acyl-CoA dehydrogenase domain-containing protein TERM 2717 2477960 - 2477980 + T 79 -6.8 -4.57516 | opp_overlap 2477961, overlap 2477961 GTCAAACCTTAAAAA ACGCCACT TTCAT AGTGGCGC TTTTAGTTTCAGTCT TERM 2718 2477961 - 2477979 + T 77 -10.3 -3.33425 | opp_overlap 2477961, overlap 2477960 TCAAACCTTAAAAAA CGCCACT TTCAT AGTGGCG CTTTTAGTTTCAGTC TERM 2719 2477979 - 2477961 - T 93 -10.3 -5.12707 | opp_overlap 2477961 2477960 TCAAACCTTAAAAAA CGCCACT TTCAT AGTGGCG CTTTTAGTTTCAGTC Shal_2055 2479510 - 2478080 - | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase Shal_2056 2479725 - 2479549 - | hypothetical protein Shal_2057 2479978 - 2480310 + | hypothetical protein Shal_2058 2480294 - 2481634 + | phosphatidylserine synthase TERM 2720 2481660 - 2481677 + F 100 -7.7 -6.04324 | opp_overlap 2481660 TGCTTGATATTGAAA GCCTGCT TATG AGTAGGC TTTTTTGTTTTTTAG Shal_2059 2481729 - 2482505 + | DTW domain-containing protein Shal_2060 2482838 - 2482996 + | hypothetical protein Shal_2061 2483622 - 2483023 - | two component LuxR family transcriptional regulator TERM 2721 2483236 - 2483226 - G 74 -8.2 -3.99405 | opp_overlap 2483226 2483220 CTAACTTATCAGAAA GCGC TTG GCGC TCCTGTTTGCTCCGT Shal_2062 2485399 - 2483615 - | histidine kinase TERM 2722 2484132 - 2484151 + g 72 -8.6 -3.69684 | CTAAAGCGTTTAATC GTCGATTG AGCC CGATCGAC TTGTTGAATCGCTTT TERM 2723 2485319 - 2485296 - G 74 -11.1 -2.83403 | opp_overlap 2485293, overlap 2485295 TCTGGGTGAGTAAAT GCCAATACG CCGACT CGTATTGGC GCAGTGTCTTCTGCA TERM 2724 2485622 - 2485636 + r 83 -5 -5.22039 | TTTAAATAACTGTAT CGCTTA TTG TAAGTG TTTTTTGAATTTAAA Shal_2063 2486848 - 2485625 - | ApbE family lipoprotein TERM 2725 2486768 - 2486786 + g 80 -5.4 -5.06451 | TGTAAGTAGCGTGTT TGTAGATT CTG AATTTACA TTTTTTGCGCTGGTG TERM 2726 2486979 - 2486964 - H 70 -9 -3.23532 | opp_overlap 2486964, overlap 2486962 2486956 ACTCAAACTAAGATA TTGCGG TTTT CCGCAA TTGTTAAGAATCTAA TERM 2727 2486964 - 2486979 + H 76 -9 -3.64487 | opp_overlap 2486962 2486956 2486964 ACTCAAACTAAGATA TTGCGG TTTT CCGCAA TTGTTAAGAATCTAA Shal_2064 2487015 - 2488397 + | FMN-binding domain-containing protein Shal_2065 2488481 - 2489521 + | porin TERM 2728 2489767 - 2489751 - f 70 -8.1 -3.67877 | opp_overlap 2489749, overlap 2489749 ATTTTTGAATAAATA GCTTTTT GAA AAAAAGC TGTACGTTGATAGAC Shal_2066 2490108 - 2490848 + | pseudouridine synthase Shal_2067 2492092 - 2490977 - | integrase family protein TERM 2729 2492215 - 2492167 - H 80 -6.2 -4.66609 | gap 1, overlap 2492168 2492169 TATTCTACTTAAAAA CCCTTATCTCTACCAGTGATAAT CGTC ATTATCACTGGTAGAAGTT-GGC AAGGTACAAGTTGGA TERM 2730 2492214 - 2492168 - H 75 -9.7 -3.39483 | gap 1, overlap 2492167 2492169 ATTCTACTTAAAAAC CCTTATCTCTACCAGTGATAAT CGTC ATTATCACTGGTAGAAGTT-GG CAAGGTACAAGTTGG TERM 2731 2492214 - 2492169 - H 70 -9.9 -2.63208 | overlap 2492168 2492167 TTCTACTTAAAAACC CTTATCTCTACCAGTGATAAT CGTC ATTATCACTGGTAGAAGTTGG CAAGGTACAAGTTGG TERM 2732 2492453 - 2492433 - H 77 -7.7 -4.22041 | opp_overlap 2492436 2492438 AAAGCGGAACATAAA TAACATGGT ATA ACCATATTA ATACCTATAACAGCA TERM 2733 2492775 - 2492785 + H 75 -5.4 -4.79174 | opp_overlap 2492775 ATGGTGTAGATAGCA TGGT GTC ACCA TTTTATTGGTTGAGT Shal_2068 2492960 - 2493466 + | hypothetical protein Shal_2069 2494647 - 2493622 - | hypothetical protein TERM 2734 2494148 - 2494121 - G 71 -9.8 -3.15579 | opp_overlap 2494119 2494111 2494121 GCAAGGTGCCAGTAA CTGCCGATGGGC CAAA GCCCATCGTGAG TATTGTCAGTTGTTC TERM 2735 2494121 - 2494148 + g 73 -9.8 -3.30629 | opp_overlap 2494121, overlap 2494119 2494111 GCAAGGTGCCAGTAA CTGCCGATGGGC CAAA GCCCATCGTGAG TATTGTCAGTTGTTC TERM 2736 2494267 - 2494253 - G 70 -5 -4.44797 | overlap 2494254 GCACGAACAGGAAAA CCTTGA CTA TCAAGA TCAGACATTAAGATC Shal_2070 2494803 - 2495192 + | hypothetical protein TERM 2737 2495209 - 2495233 + F 100 -15.9 -5.12617 | opp_overlap 2495209 GTCGTTAAACATAAA GGCTAAGCTAA TTA TTAGCTTAGCC TTTTTTGAGTGATTA TERM 2738 2495233 - 2495209 - f 100 -15.9 -4.32857 | opp_overlap 2495209 GTCGTTAAACATAAA GGCTAAGCTAA TTA TTAGCTTAGCC TTTTTTGAGTGATTA TERM 2739 2495742 - 2495756 + F 75 -10 -3.21747 | opp_overlap 2495752 TTCCTGCCTTAGAGT CTGCCT AAG AGGCAG TTACTGCTAAACTAA Shal_2071 2495819 - 2496511 + | short-chain dehydrogenase/reductase SDR TERM 2740 2496842 - 2496825 - f 72 -3.3 -5.0133 | opp_overlap 2496825 CATCTGCTGAAAAAA GGAGTAC TTTC GCGCTCC TTAATTTAACTTAAC TERM 2741 2497691 - 2497660 - g 74 -6.8 -4.2074 | gap 1, opp_overlap 2497663, overlap 2497656 2497661 2497686 CGCTCAAGAGATAAA CTATTCTCGTTGCAG TTA CTGCAA-AAGAATAA CTTAGATATTCCAAC TERM 2742 2497909 - 2497928 + G 76 -5 -4.89477 | TTCATTAAAGAAGCC CAGGGTAA GGAT TTACGCTG TTTTGTTATTGACGG Shal_2072 2496871 - 2498247 + | alpha-L-glutamate ligase TERM 2743 2498259 - 2498314 + F 100 -15.8 -3.05614 | gap 1, opp_overlap 2498276, overlap 2498276 GTAATCCGCTCCAAC CTAGGATAAATGAAAAAGCGTTATGCC TCT GGCATAGCGCTTTTTT-TATAGCCTAG TGATTATATTTTCTT TERM 2744 2498276 - 2498298 + F 100 -14.2 -5.626 | opp_overlap 2498276, overlap 2498259 AGGATAAATGAAAAA GCGTTATGCC TCT GGCATAGCGC TTTTTTTATAGCCTA TERM 2745 2498298 - 2498276 - f 100 -12 -5.05505 | opp_overlap 2498259 2498276 AGGATAAATGAAAAA GCGTTATGCC TCT GGCATAGCGC TTTTTTTATAGCCTA Shal_2073 2498439 - 2498765 + | hypothetical protein TERM 2746 2499005 - 2499043 + T 90 -12.6 -3.65046 | opp_overlap 2499005 2499016 TACGTACCTAATACA TGCATCGATAAGGCTC ACTCAAC GAGCCTTACTGATGCA TTATTACAATACAGA TERM 2747 2499043 - 2499005 - T 93 -14 -3.1082 | opp_overlap 2499005, overlap 2499016 TACGTACCTAATACA TGCATCGATAAGGCTCAC TCA ACGAGCCTTACTGATGCA TTATTACAATACAGA TERM 2748 2499344 - 2499361 + T 76 -3.5 -5.27335 | TAGAGCCTATGAAAC TGTATTT TTTA AAATGCA TTTTTGTTTCAAAAA TERM 2749 2500215 - 2500201 - T 72 -8.6 -3.51365 | CTATACCTCAGACAA GCAAAG CAC CTTTGC ACCGGTACAGCATCT TERM 2750 2500993 - 2501008 + T 93 -10.4 -4.72272 | opp_overlap 2500993 AAGTGTATAAAAAAA CCCAGC CTAA GCTGGG TTTTTAGTAAAACAG TERM 2751 2501008 - 2500993 - T 100 -10.4 -5.63504 | opp_overlap 2500993 AAGTGTATAAAAAAA CCCAGC CTAA GCTGGG TTTTTAGTAAAACAG Shal_2076 2502039 - 2501029 - | glyceraldehyde-3-phosphate dehydrogenase, type I TERM 2752 2502237 - 2502217 - R 77 -9.8 -3.4799 | opp_overlap 2502216, overlap 2502210 ATAAAATACTTATAA GTTGGCAA ATTTA TTGCCAAC ATTAAATGATAGTTA Shal_2077 2503102 - 2502260 - | hypothetical protein TERM 2753 2504554 - 2504519 - g 76 -7.6 -4.2231 | overlap 2504523 AACGAGTACCTAAAA GACATGGCATTGCAGT CTGA ACTGCAAAACCAAATC GACTACACTGATTCT TERM 2754 2504550 - 2504523 - g 70 -9.2 -3.43007 | overlap 2504519 AGTACCTAAAAGACA TGGCATTGCAGT CTGA ACTGCAAAACCA AATCGACTACACTGA Shal_2078 2503325 - 2504761 + | glyceraldehyde-3-phosphate dehydrogenase TERM 2755 2504817 - 2504788 - T 84 -12.3 -3.07994 | opp_overlap 2504793, overlap 2504793 GTTAAGCTTAGCGAA TAAAACGCCTCTA TTTT TAGAGGCGTTTTT GCTTTTTAAACTTCC TERM 2756 2504793 - 2504812 + T 100 -12.2 -5.18355 | opp_overlap 2504788 2504793 GCTTAGCGAATAAAA CGCCTCTA TTTT TAGAGGCG TTTTTGCTTTTTAAA TERM 2757 2504812 - 2504793 - T 100 -12.2 -4.67982 | opp_overlap 2504793, overlap 2504788 GCTTAGCGAATAAAA CGCCTCTA TTTT TAGAGGCG TTTTTGCTTTTTAAA TERM 2758 2505521 - 2505501 - T 73 -10.5 -2.89742 | overlap 2505504 TGGAATCGGTAGACA CAAGGGATT TAA AATCCCTCG CTGAATAAGCGTGCC TERM 2759 2505518 - 2505504 - T 72 -8.6 -3.5947 | overlap 2505501 AATCGGTAGACACAA GGGATT TAA AATCCC TCGCTGAATAAGCGT TERM 2760 2505593 - 2505570 - T 73 -8.1 -3.80573 | opp_overlap 2505571, overlap 2505571 GGTACCATCATTAAA GCCTCCGCA TTAACG TGCGGAGGT TTTTTTGTATCTTGC TERM 2761 2505571 - 2505592 + T 100 -12.3 -5.80248 | opp_overlap 2505570 2505571 GTACCATCATTAAAG CCTCCGCAT TAAC GTGCGGAGG TTTTTTTGTATCTTG TERM 2762 2505592 - 2505571 - T 80 -11.6 -2.88023 | opp_overlap 2505571, overlap 2505570 GTACCATCATTAAAG CCTCCGCA TTAACG TGCGGAGG TTTTTTTGTATCTTG TERM 2763 2506172 - 2506191 + T 72 -8.6 -3.57263 | opp_overlap 2506172 2506173 2506175, overlap 2506173 CATCATTGATGATAA TCACCTAC TTCA GTAGGTGG TTTAGGGCTGAGAAT TERM 2764 2506173 - 2506190 + T 70 -9.9 -2.74144 | opp_overlap 2506172 2506173 2506175, overlap 2506172 ATCATTGATGATAAT CACCTAC TTCA GTAGGTG GTTTAGGGCTGAGAA TERM 2765 2506190 - 2506173 - T 70 -9.9 -2.65476 | opp_overlap 2506173 2506172, overlap 2506172 2506175 ATCATTGATGATAAT CACCTAC TTCA GTAGGTG GTTTAGGGCTGAGAA TERM 2766 2506228 - 2506212 - T 91 -8 -5.18726 | opp_overlap 2506211 GGCTGAGAATAAAAA GCCCTA ACATG TAGGGC GATTGTGTGATGCTG Shal_2079 2506575 - 2506246 - | DsrC family protein Shal_2080 2506858 - 2506577 - | DsrH family protein Shal_2081 2507214 - 2506858 - | DsrE family protein Shal_2082 2507612 - 2507223 - | DsrE family protein TERM 2767 2507642 - 2507624 - R 100 -6.7 -5.78622 | opp_overlap 2507624 TCATGGTAAAAAAAA TGGCCCT GTAAT AGGACCA TTTTAACTCAATTAA Shal_2083 2508332 - 2507670 - | hypothetical protein TERM 2768 2508477 - 2508467 - R 75 -8.2 -3.98484 | AACTCAAGGTATAAA GCGC TTA GCGC ATAAAATAGCGTTAA Shal_2084 2509406 - 2508504 - | putative DNA-binding transcriptional regulator TERM 2769 2510139 - 2510119 - g 78 -5.5 -4.88293 | opp_overlap 2510121 2510123 AATCGTAAAAAGAAA GATATTAGC TAC GTTAATATC TTCAAGAACACCAAG Shal_2085 2509537 - 2510769 + | inner membrane transport protein YdhC TERM 2770 2510987 - 2510962 - T 90 -13.3 -2.64243 | opp_overlap 2510963 CCACATTCTAGATGA GGCCCGTAGCA GAAA TGCTACGGGCT TTTTCGCATATTGGA TERM 2771 2510963 - 2510986 + T 100 -16.8 -4.66953 | opp_overlap 2510962 CACATTCTAGATGAG GCCCGTAGCA GAAA TGCTACGGGC TTTTTCGCATATTGG TERM 2772 2511105 - 2511079 - T 100 -19.6 -4.12532 | opp_overlap 2511079 2511082, overlap 2511082 TTCGCCACACATAAA GAAGCCCGCTAT TTT ATAGCGGGCTTC TTGCTATCTGGAGTT TERM 2773 2511079 - 2511105 + T 100 -19.6 -3.32765 | opp_overlap 2511079 2511082, overlap 2511082 TTCGCCACACATAAA GAAGCCCGCTAT TTT ATAGCGGGCTTC TTGCTATCTGGAGTT TERM 2774 2511082 - 2511102 + T 100 -15.5 -3.80018 | opp_overlap 2511079 2511082, overlap 2511079 GCCACACATAAAGAA GCCCGCTAT TTT ATAGCGGGC TTCTTGCTATCTGGA TERM 2775 2511102 - 2511082 - T 100 -15.5 -4.18674 | opp_overlap 2511082 2511079, overlap 2511079 GCCACACATAAAGAA GCCCGCTAT TTT ATAGCGGGC TTCTTGCTATCTGGA Shal_2086 2511942 - 2511163 - | 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase Shal_2087 2513448 - 2512069 - | major facilitator transporter Shal_2088 2514473 - 2513451 - | 4-hydroxy-2-ketovalerate aldolase Shal_2089 2515406 - 2514483 - | acetaldehyde dehydrogenase Shal_2090 2516266 - 2515451 - | 4-oxalocrotonate decarboxylase Shal_2091 2517244 - 2516276 - | flavin reductase domain-containing protein Shal_2092 2517534 - 2518958 + | aldehyde dehydrogenase TERM 2776 2518996 - 2519014 + T 93 -11 -4.7629 | opp_overlap 2518996 AACATTAATAAAAAA TGGCAGCT ACT GGCTGCCA TTTTTAGGTTAGTAC TERM 2777 2519014 - 2518996 - T 100 -10.3 -5.54885 | opp_overlap 2518996 AACATTAATAAAAAA TGGCAGC TACTG GCTGCCA TTTTTAGGTTAGTAC Shal_2093 2520157 - 2519063 - | Rieske (2Fe-2S) domain-containing protein Shal_2094 2521620 - 2520235 - | major facilitator transporter Shal_2095 2521796 - 2522899 + | beta-lactamase domain-containing protein Shal_2096 2522944 - 2524644 + | AMP-dependent synthetase and ligase TERM 2778 2524660 - 2524688 + F 81 -6.8 -4.81083 | opp_overlap 2524660 AACATGAGCAATAAG GCAGCGTCAA CTAATGATT TTGACGTTGC TTTTTAATAGTTAAG Shal_2097 2524911 - 2526680 + | fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein Shal_2098 2526866 - 2528506 + | acyl-CoA synthetase TERM 2779 2528532 - 2528517 - T 71 -7.6 -3.86944 | overlap 2528527 CCTAGAACCATCAAA TACGCA ACAC TGCGTA AAATAAGCACTATTA TERM 2780 2528548 - 2528572 + T 83 -5.1 -5.28176 | gap 1 AAATAAGCACTATTA GCCGTCTATA TACTTT TA-AGACGGC TTTTTTGTGGGTAAA TERM 2781 2528876 - 2528846 - T 75 -9.9 -3.41978 | opp_overlap 2528846 GGATAAGGGAATGAA GGAAAAGTGAATA CAAGC TTTTCACTTTTCC TGTATGAGTTAAAGT TERM 2782 2528846 - 2528876 + T 72 -9.9 -2.95091 | opp_overlap 2528846 GGATAAGGGAATGAA GGAAAAGTGAATA CAAGC TTTTCACTTTTCC TGTATGAGTTAAAGT Shal_2099 2531323 - 2528885 - | hypothetical protein TERM 2783 2529126 - 2529138 + g 72 -5.5 -4.50193 | overlap 2529108 GCAGTAAATACTGCG GCTGT TCC ACGGC TTTTCATTGCTTGGT TERM 2784 2530596 - 2530583 - G 76 -2.4 -5.31275 | overlap 2530588 2530591 TGCGATGACAAAAAA CAAC AGCACA GTTG ATAAACCGTCCATCA Shal_2100 2532365 - 2531346 - | glycosyl hydrolase TERM 2785 2532037 - 2532049 + g 82 -6.9 -4.8048 | opp_overlap 2532037 TCTCGCCAAGACAAG CCGCC ATC GGTGG TTTTTAATATCCAAC TERM 2786 2532202 - 2532188 - G 73 -4.2 -4.84311 | overlap 2532190 CGGTAGACAATAAAA GCGAAC CTA GTTCTC CACTTGCGACAAGCC Shal_2101 2532756 - 2533979 + | acyl-CoA dehydrogenase type 2 TERM 2787 2534497 - 2534473 - g 71 -3.7 -4.73388 | AATCGTGATGAAAAA TCAGTTATT TTCAAGG AACAACTGA AGGCATTAACCTGTG Shal_2102 2534020 - 2535105 + | oxidoreductase FAD-binding subunit TERM 2788 2535149 - 2535106 - f 100 -16.2 -3.1247 | opp_overlap 2535112 2535146, overlap 2535112 ATTTGTTACACCTAA CACAAATTAACGGGCGTTGT TGTA AAATCGCCCGTTAATTTGCG CTAATGCACTTTTAT TERM 2789 2535112 - 2535143 + F 80 -10.2 -3.62096 | opp_overlap 2535112 2535106 TACACCTAACACAAA TTAACGGGCGTTGT TGTA AAATCGCCCGTTAA TTTGCGCTAATGCAC TERM 2790 2535143 - 2535112 - f 89 -10.2 -4.22678 | opp_overlap 2535112, overlap 2535106 TACACCTAACACAAA TTAACGGGCGTTGT TGTA AAATCGCCCGTTAA TTTGCGCTAATGCAC Shal_2103 2535582 - 2536370 + | short-chain dehydrogenase/reductase SDR Shal_2104 2536378 - 2537481 + | NADH:flavin oxidoreductase/NADH oxidase TERM 2791 2537890 - 2537904 + G 72 -6.4 -4.26351 | opp_overlap 2537889 TTGTAATCAAACAGG GCAGAT GTT GTCTGC TTTATTAGGTTGGTC Shal_2105 2537507 - 2538256 + | electron transfer flavoprotein alpha/beta-subunit Shal_2106 2538269 - 2539222 + | electron transfer flavoprotein alpha subunit Shal_2107 2539311 - 2540504 + | LuxR family transcriptional regulator Shal_2108 2541358 - 2540576 - | enoyl-CoA hydratase TERM 2792 2541423 - 2541392 - H 83 -11.9 -3.25823 | GGTGTCGTACAGCAA TATTTTTTAACCG AAGCGA CGGTTAAAAAATA GCCACAAATTGATGT TERM 2793 2542062 - 2542079 + G 76 -4.7 -4.84539 | opp_overlap 2542050, overlap 2542064 GAACCGCCGCTTATG GGGCGGC AAAA GCCGCTA TTTTATCTTTAGTTC TERM 2794 2542064 - 2542077 + G 83 -9.5 -4.01747 | opp_overlap 2542050, overlap 2542062 ACCGCCGCTTATGGG GCGGC AAAA GCCGC TATTTTATCTTTAGT TERM 2795 2542254 - 2542266 + G 78 -5.5 -4.87389 | CGGATCCAGCTGATA TAGGC AAG GCCTG TTTATTTTTAGCCTC Shal_2109 2541605 - 2542375 + | short chain dehydrogenase Shal_2110 2542500 - 2543483 + | hypothetical protein Shal_2111 2543496 - 2544623 + | acyl-CoA dehydrogenase domain-containing protein Shal_2112 2544610 - 2545059 + | dehydratase Shal_2113 2545073 - 2546251 + | lipid-transfer protein TERM 2796 2547087 - 2547107 + G 79 -10.5 -3.60151 | TAATCCATGGGTGCG TAGCGCCTT AGC AAGGTGCTA TTCTCGTTTGGAAGC Shal_2114 2546254 - 2547423 + | acyl-CoA dehydrogenase domain-containing protein Shal_2115 2547443 - 2548681 + | acyl-CoA dehydrogenase domain-containing protein Shal_2116 2548678 - 2549883 + | acyl-CoA dehydrogenase domain-containing protein TERM 2797 2549890 - 2549944 + T 100 -12.7 -4.62783 | gap 1, opp_overlap 2549906, overlap 2549893 2549906 ACCGCATAAGTTGAT TACCCTATAATAAAAACGCATTAACA TTAT TGTTAATGCGTTTTTATT-TACGCTA TTTTTAGCCTAGCTA TERM 2798 2549893 - 2549941 + T 95 -14.4 -2.95166 | gap 1, opp_overlap 2549906, overlap 2549890 2549906 GCATAAGTTGATTAC CCTATAATAAAAACGCATTAACA TTAT TGTTAATGCGTTTTTATT-TACG CTATTTTTAGCCTAG TERM 2799 2549929 - 2549906 - T 100 -12.6 -5.19328 | opp_overlap 2549893 2549890 2549906 ACCCTATAATAAAAA CGCATTAACA TTAT TGTTAATGCG TTTTTATTTACGCTA TERM 2800 2549906 - 2549929 + T 100 -12.6 -5.28942 | opp_overlap 2549906, overlap 2549893 2549890 ACCCTATAATAAAAA CGCATTAACA TTAT TGTTAATGCG TTTTTATTTACGCTA TERM 2801 2550061 - 2550101 + T 100 -15.9 -4.08064 | opp_overlap 2550068, overlap 2550068 ATGACTTTTAGAGAT TAAAAAAGATGGATTATTA AGT TAATAATCCATCTTTTATA TTTTACCACCCACTT TERM 2802 2550094 - 2550068 - T 100 -14 -5.24989 | opp_overlap 2550061 2550068 TTAGAGATTAAAAAA GATGGATTATTA AGT TAATAATCCATC TTTTATATTTTACCA TERM 2803 2550068 - 2550094 + T 100 -14 -4.89567 | opp_overlap 2550068, overlap 2550061 TTAGAGATTAAAAAA GATGGATTATTA AGT TAATAATCCATC TTTTATATTTTACCA Shal_2117 2552283 - 2550163 - | NADH:flavin oxidoreductase/NADH oxidase Shal_2118 2553281 - 2552445 - | alpha/beta hydrolase fold TERM 2804 2554253 - 2554265 + G 71 -7.7 -3.93768 | opp_overlap 2554252 AGAACCCGAGGATAT CGCAA AGC TTGCG TCTTTTATTGCCAGT Shal_2119 2553600 - 2554343 + | short-chain dehydrogenase/reductase SDR TERM 2805 2554786 - 2554773 - g 78 -5.9 -4.75288 | overlap 2554774 TCAGATCAAAATAAA CCGCC AATC GGCGA TACGAAGATGCGTTG TERM 2806 2554890 - 2554925 + G 74 -5.5 -4.60487 | gap 1, opp_overlap 2554890 CCTAATACAAGTGAA TTGC-CTAATGTCGCA ATCCC TGCGCCTTTAGAGCAA TTTTTAAACATGATG Shal_2120 2554353 - 2554979 + | enzyme TERM 2807 2555948 - 2555938 - g 73 -4.6 -4.79955 | AGATGTACAACAAAA CGGC ATC ACCG TATGTCAGTACATTG Shal_2121 2555045 - 2556910 + | acyl-CoA synthetase Shal_2122 2556923 - 2558134 + | nonspecific lipid-transfer protein Shal_2123 2558137 - 2559072 + | hypothetical protein TERM 2808 2559098 - 2559116 + F 100 -11 -5.86061 | CCCATGTGAAGTTTT GCCGAGTT AAC AGCTCGGC TTTTTTTTGCTCAAA Shal_2124 2559265 - 2560167 + | glyoxalase/bleomycin resistance protein/dioxygenase Shal_2125 2560168 - 2561043 + | coenzyme A transferase TERM 2809 2561825 - 2561815 - g 81 -8.2 -4.48792 | overlap 2561812 2561817 AGAATGTAAAAACAA CGGC TGC GCCG ACACAAGAGCAGCTT Shal_2126 2561118 - 2561948 + | coenzyme A transferase Shal_2127 2561948 - 2562904 + | enoyl-CoA hydratase TERM 2810 2563121 - 2563145 + G 75 -6.5 -4.37534 | ATGAAATTCTCAAGG TTATTACTGCC ACT GGCAATAGTAA TTTTGGTCTCAATTT Shal_2128 2562901 - 2564055 + | 2-nitropropane dioxygenase NPD Shal_2129 2564058 - 2564843 + | enoyl-CoA hydratase Shal_2130 2564874 - 2566031 + | acyl-CoA dehydrogenase domain-containing protein TERM 2811 2566189 - 2566179 - g 74 -5.4 -4.64334 | AACTGCGCAATAAAA TTGC CGA GCAA GGCTTAACTGCTCTA TERM 2812 2567098 - 2567085 - g 72 -6.7 -4.28651 | ATCAAAATTGCAAAA TTGGC CCAG GCCAA ACCTTTGGGAGAACG Shal_2131 2566040 - 2567116 + | acyl-CoA dehydrogenase domain-containing protein Shal_2132 2567116 - 2568270 + | acetyl-CoA acetyltransferase Shal_2133 2568326 - 2569204 + | short chain dehydrogenase TERM 2813 2569642 - 2569656 + G 75 -10 -3.54489 | opp_overlap 2569640 2569644 GCGCCGACAGTAACG CACCAC TTC GTGGTG TTCCTTTCGCGTTAA Shal_2134 2569281 - 2570870 + | amidase TERM 2814 2570863 - 2570893 + T 72 -3.5 -5.08824 | gap 1, opp_overlap 2570871, overlap 2570863 2570864 2570867 AATTGCCAGGGTTTA T-TAGTTAAGCTTC GAAT GAAGCTTGATTACA TTTTTTAGCTACGGC TERM 2815 2571095 - 2571125 + T 83 -3.3 -5.53991 | gap 1, opp_overlap 2571098, overlap 2571094 2571099 2571102 ACTTTTGCCCCAAAG TG-AGCCGGCCTTC GAAT GAAGGCTGATTACA TTTTTTTGGTAGGTG TERM 2816 2571248 - 2571283 + T 100 -17 -2.92157 | gap 1, overlap 2571241 CCATCCTTGGAAGCT CGGCCATGA-CGTCCAT GTC ATGGACGGTCACGGCCG TATCTACACTTGATA TERM 2817 2571466 - 2571513 + T 75 -10 -3.20723 | opp_overlap 2571465 2571466, overlap 2571457 GCGCCTCACTGAAAG TGTATCTGTTGTCGTCGATAAA TATG TTTATCGACGACAAAAGGGGCC TTAAATTAGTCGAGC Shal_2135 2571725 - 2571519 - | hypothetical protein TERM 2818 2571873 - 2571905 + H 89 -12.2 -3.62032 | opp_overlap 2571873 CTCTGATCTGCATAA TAGCCTTTGCATAA TAGCC TTTTGCAAAGGCTA TTTCGGCATTCATGT TERM 2819 2571905 - 2571873 - H 86 -12.2 -3.31144 | opp_overlap 2571873 CTCTGATCTGCATAA TAGCCTTTGCATAA TAGCC TTTTGCAAAGGCTA TTTCGGCATTCATGT Shal_2136 2572138 - 2574375 + | hypothetical protein TERM 2820 2575171 - 2575185 + T 71 -7.2 -3.84451 | TTTGGGTTTTTGTAA TCAAAC TAA GTTTGA TTTGGCTTTACGAGG TERM 2821 2575244 - 2575226 - T 71 -6 -4.183 | GCAAGCTCCAACAAA CTTGTTGT CTA ACAACGAG CTAAAAAAAACGGCT TERM 2822 2575272 - 2575255 - T 100 -12.7 -5.82316 | opp_overlap 2575255 ACGAGCTAAAAAAAA CGGCTCC TGTT GGAGCCG TTTCGATTAACACAG TERM 2823 2575255 - 2575272 + T 90 -12.7 -3.75153 | opp_overlap 2575255 ACGAGCTAAAAAAAA CGGCTCC TGTT GGAGCCG TTTCGATTAACACAG Shal_2137 2576870 - 2575344 - | hypothetical protein Shal_2138 2578282 - 2576897 - | hypothetical protein Shal_2139 2578678 - 2579463 + | short chain dehydrogenase Shal_2140 2579472 - 2579957 + | dehydratase Shal_2141 2579970 - 2581175 + | acetyl-CoA acetyltransferase Shal_2142 2581189 - 2582037 + | enoyl-CoA hydratase/isomerase TERM 2824 2582836 - 2582826 - g 70 -2.4 -4.96848 | opp_overlap 2582826 GCCCCTAGATAAAAA TGCC AGC GGCG GATTTTTCTTATACC Shal_2143 2582089 - 2583747 + | electron-transferring-flavoprotein dehydrogenase Shal_2144 2583882 - 2584646 + | short-chain dehydrogenase/reductase SDR Shal_2145 2584703 - 2585098 + | nuclear transport factor 2 TERM 2825 2585364 - 2585386 + G 76 -4.1 -5.06816 | TTGTTAGAAAAAATG GGAGAACGA CTGTT TTGTTCACC TTTTTATTCCACGAT TERM 2826 2586185 - 2586205 + G 72 -6.1 -4.2558 | CGCTGGTTGCGGGAT CCAACTTCA CGG TGGCGTTGG TTTTACTCAAGAGTA Shal_2146 2585127 - 2586335 + | acyl-CoA dehydrogenase domain-containing protein TERM 2827 2586417 - 2586457 + G 73 -7.5 -4.15222 | overlap 2586419 2586421 TGAGCGGAGAATTTG AATGTGTTCGTGGCCGAGG TGG CCCCGGAGACGAACATATG TTTATTGAAGAGCGT TERM 2828 2586419 - 2586455 + G 79 -10.1 -3.6761 | overlap 2586417 2586421 AGCGGAGAATTTGAA TGTGTTCGTGGCCGAGG TGG CCCCGGAGACGAACATA TGTTTATTGAAGAGC TERM 2829 2586421 - 2586453 + G 77 -10.5 -3.41738 | overlap 2586419 2586417 CGGAGAATTTGAATG TGTTCGTGGCCGAGG TGG CCCCGGAGACGAACA TATGTTTATTGAAGA TERM 2830 2586731 - 2586753 + G 76 -9.2 -3.65902 | TGGTGTCAGGGTTAC TCAGAGCC CAATGCT GGCTCTGA TTTAGCTAACGTACA Shal_2147 2586332 - 2587522 + | acyl-CoA dehydrogenase domain-containing protein TERM 2831 2587630 - 2587612 - T 93 -10.3 -4.78848 | overlap 2587596 GCTTTAAACAGAAAA GCCCCTA TCAAG TAGGGGC TTAGAGTTAAATTGA Shal_2148 2590833 - 2587657 - | acriflavin resistance protein Shal_2149 2592030 - 2590837 - | RND family efflux transporter MFP subunit TERM 2832 2592496 - 2592514 + r 76 -8.9 -3.68761 | opp_overlap 2592496 GACAGACAAAAAAAA GCAGTAC TATAT GTACTGC TTGTAATTTTACGAT TERM 2833 2592514 - 2592496 - R 100 -8.9 -6.06529 | opp_overlap 2592496 GACAGACAAAAAAAA GCAGTAC TATAT GTACTGC TTGTAATTTTACGAT Shal_2150 2592866 - 2592531 - | SecC motif-containing protein TERM 2834 2593397 - 2593385 - g 83 -9.1 -4.2803 | CACCTGAATTCAAAA CCAGC TAC GCTGG CGAAGAAGTGTATAT Shal_2151 2593204 - 2594124 + | putative manganese-dependent inorganic pyrophosphatase TERM 2835 2594185 - 2594166 - T 93 -9.3 -5.28778 | opp_overlap 2594166 ACCATTGATAAAAAA GGCCGAA TATTAG TTCGGCC TTTTTTATTTTCACT TERM 2836 2594166 - 2594185 + T 100 -10 -5.80951 | opp_overlap 2594166 ACCATTGATAAAAAA GGCCGAAT ATTA GTTCGGCC TTTTTTATTTTCACT Shal_2152 2596611 - 2594227 - | putative ATP-dependent protease La-relatedprotein TERM 2837 2596195 - 2596242 + g 84 -8.1 -4.72333 | gap 3 GCGGCTATAGTACAT CTCATTGTCG-AAC-GCTAAAGGT AAG GCCTTTAGCAGTTTTGACA-TGAG TTTTTCGATATCCTT TERM 2838 2596878 - 2596857 - R 79 -8.7 -4.05446 | CTGCGCAATGATAAA GCCCTCAAT GAGT AATGAGGGC TAATACATCCATTTT Shal_2153 2599602 - 2596963 - | molybdopterin oxidoreductase TERM 2839 2599827 - 2599791 - R 80 -10.4 -3.62096 | gap 1, opp_overlap 2599791 CCCTATGACTGTAAA CCATGAACTCTTAACGT AAAC ACAC-AAGAGTTCATGG TTATTCTTAGTCGCT TERM 2840 2599791 - 2599827 + r 71 -6.8 -3.99775 | opp_overlap 2599791 CCCTATGACTGTAAA CCATGAACTCTT AACGTAAACACAC AAGAGTTCATGG TTATTCTTAGTCGCT Shal_2154 2602265 - 2599896 - | peptidase U32 TERM 2841 2602602 - 2602571 - R 93 -13.2 -3.36968 | TATTGAATGTGACAA GTATTGAGAGCTAC AGAC GCAACTCTCAATAC TCAACTATTTTAGTA Shal_2155 2603114 - 2602650 - | rhodanese domain-containing protein TERM 2842 2602898 - 2602883 - G 78 -4.7 -5.00138 | CAGCTAAACCAAAAA CCTGA CGCTCT TCAGG GGTACGGATATCGAT Shal_2156 2603934 - 2604980 + | hypothetical protein TERM 2843 2605036 - 2605058 + F 89 -5.5 -5.52096 | opp_overlap 2605036 AAACACAGCCATAAA GGAAGCCGC GTTAA GTTGCTTCC TTTTTTATTGGCTTT TERM 2844 2605137 - 2605121 - f 74 -3.7 -5.09204 | overlap 2605122 ATATTTGAATAAAAA CCCTAAA GCC CTTAGGA TCGGCGCTACAGAAT Shal_2157 2605174 - 2605812 + | hypothetical protein TERM 2845 2605892 - 2605927 + T 75 -9.8 -3.42699 | gap 1, opp_overlap 2605903, overlap 2605869 2605867 2605903 AGAGAGTTATTGTTA GCGCTATTTAACCGCCA ATA TGGCCGTTATAT-GCGC TTGTAGTCACTGGAT Shal_2158 2607026 - 2606163 - | putative metallothionein SmtA Shal_2159 2607619 - 2608464 + | beta-lactamase domain-containing protein TERM 2846 2608711 - 2608659 - T 76 -6.6 -4.41047 | gap 2 ATTTTTTAATCAAAA GTGGTAAGCCTATCTACGCTTCAAGT TTT ACT-GA-GCACAAATAGATTTACCAC TTTTCTAAAGCTATT Shal_2160 2610042 - 2608747 - | cytosine deaminase TERM 2847 2608789 - 2608802 + g 78 -6.7 -4.55798 | opp_overlap 2608789 2608788 2608784 TTCGCTTAAATGAAT TTGCG TTTG CGCAA TTTTAGTTTCAGCTA Shal_2161 2611318 - 2610053 - | cytosine permease Shal_2162 2611705 - 2612061 + | putative outer membrane lipoprotein TERM 2848 2612058 - 2612041 - T 93 -12.7 -3.90328 | opp_overlap 2612037 TATAAGTGCGAGAAA GCGCTCG GTAT CGAGCGC TAAATATATGCATTA Shal_2163 2613612 - 2612071 - | EmrB/QacA family drug resistance transporter TERM 2849 2612686 - 2612668 - G 76 -8.8 -3.83026 | opp_overlap 2612668 2612665 TGGCGCCATAGCAAA CCCCGTAG TTT CTACCGGG TAATTCAATAACTGT Shal_2164 2614657 - 2613614 - | secretion protein HlyD family protein TERM 2850 2614073 - 2614085 + g 81 -3.3 -5.27477 | overlap 2614074 ACTGGCCTGACTGAG CGCAG CTG CTGCC TTTTTTACTTCAGGT Shal_2165 2615016 - 2614864 - | hypothetical protein TERM 2851 2615192 - 2615207 + H 71 -4.8 -4.56597 | TAACCAGTGCGAATT CAATTA CATC TAATTG TTTTTAACAGCACCA Shal_2166 2615260 - 2616486 + | RND family efflux transporter MFP subunit TERM 2852 2619311 - 2619293 - g 72 -3.1 -5.01732 | opp_overlap 2619293 AATGGCGGCAAAAAA CTCGATA TTGAT TGTCGAG TTTGCCAACCAATTA Shal_2167 2616486 - 2619620 + | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 2853 2619665 - 2619702 + G 77 -7.1 -4.54449 | gap 1, opp_overlap 2619665 2619666 2619692, overlap 2619665 2619666 ATCATAAGATGACAA T-CGGTGGTGTTAACTCG TTT CGAATTAGCACCACAGCA TTTTGTGTCGCCTGT TERM 2854 2619666 - 2619700 + G 78 -12.2 -2.58686 | opp_overlap 2619665 2619666 2619692, overlap 2619665 2619665 TCATAAGATGACAAT CGGTGGTGTTAACTCG TTT CGAATTAGCACCACAG CATTTTGTGTCGCCT TERM 2855 2619700 - 2619666 - g 78 -12.2 -2.72381 | opp_overlap 2619666 2619665 2619665, overlap 2619665 2619692 TCATAAGATGACAAT CGGTGGTGTTAACTCG TTT CGAATTAGCACCACAG CATTTTGTGTCGCCT TERM 2856 2619832 - 2619849 + G 74 -5.5 -4.55689 | GAGCAGAACGTTGGC CTCAAGC ATTG GCGTGAG TTTTATCTCGATCCT TERM 2857 2621134 - 2621114 - g 75 -3.2 -5.09426 | CTGAACTTGAAAAAA CGACTGGC GAGCA ACAAGTCG AAGAACTTACTAAAT Shal_2168 2619613 - 2621151 + | RND efflux system outer membrane lipoprotein Shal_2169 2622601 - 2621348 - | DNA-directed DNA polymerase Shal_2170 2623011 - 2622604 - | peptidase S24/S26 domain-containing protein TERM 2858 2622856 - 2622834 - G 77 -7 -4.50058 | overlap 2622847 TATCGACAATTAAAA TGTCGCCATC AAA GATGCCAACA CCTTGCATTGAGTCA Shal_2171 2623416 - 2624720 + | diguanylate cyclase Shal_2172 2624863 - 2625066 + | hypothetical protein TERM 2859 2625219 - 2625189 - f 70 -8.3 -3.41693 | opp_overlap 2625180, overlap 2625174 GCTAGCACCAAGCAA GCCGTTAGCTATC ACATG GATAGTTAGCGGC TCTCAAGGAATTTAT Shal_2173 2625612 - 2625998 + | hypothetical protein TERM 2860 2626239 - 2626216 - f 70 -9 -3.17688 | opp_overlap 2626207 2626216 TAATTATGGTATCAA CATACTAGTT CATG AACTAGCATG TTGTGAGCATTTAAG TERM 2861 2626375 - 2626393 + F 77 -10.4 -3.41527 | ACATTAGTTACACTT TTCATCAC GTC GTGATGAA TTGTGATGAACCTTC TERM 2862 2626926 - 2626903 - f 93 -11 -5.06103 | opp_overlap 2626903 ATAAGTTTCAAAAAA GCCACTTGCA GCAA TGCTAGTGGC TCGTTGGGACTTAAG TERM 2863 2626903 - 2626926 + F 76 -11 -2.73542 | opp_overlap 2626903 ATAAGTTTCAAAAAA GCCACTTGCA GCAA TGCTAGTGGC TCGTTGGGACTTAAG TERM 2864 2628033 - 2628020 - g 72 -3.1 -5.00616 | GCTTCTGCTAAAAAA TCACC CGAT GGTAA AGTATGGCTTAACTC Shal_2174 2627402 - 2628274 + | hypothetical protein TERM 2865 2628567 - 2628588 + F 74 -5.1 -4.76088 | opp_overlap 2628564 TGAGCGAATGGAGGT CAAGGGCCA AACC TGACTCTTG TTATTTTTTGCTTTC Shal_2175 2628806 - 2629516 + | hypothetical protein TERM 2866 2631370 - 2631360 - g 78 -5.4 -4.75356 | overlap 2631367 AAATAGAGGCAAAAA CCAA AAC TTGG ATGCCAACTTCACTC Shal_2176 2629510 - 2631786 + | helicase domain-containing protein TERM 2867 2631859 - 2631886 + F 70 -5.5 -4.36914 | opp_overlap 2631858 2631861 2631863, overlap 2631861 ACTAATCTTATACAG GAGAGCTAGTC CGTAAC GTCTAGCTCAC TTTTCTACAAGGACG TERM 2868 2632468 - 2632420 - f 93 -6.8 -5.38249 | gap 1 AGTAACCACAAAAAA TGCCGCTGATCTTCTAGT-TCGA ATTG TCGATACTAAAAACACTGCGGCA GGTAAAGACGAACTA Shal_2177 2632752 - 2633318 + | hypothetical protein Shal_2178 2633378 - 2634127 + | hypothetical protein TERM 2869 2634198 - 2634215 + F 77 -10.5 -3.29324 | opp_overlap 2634194 ATAGCTAACAATTTT TGCCCGC TTAA GCGGGCG TTAACTTTCAGTGAA Shal_2179 2634252 - 2635220 + | hypothetical protein TERM 2870 2635250 - 2635293 + F 82 -11.1 -3.48063 | opp_overlap 2635251, overlap 2635251 TTCGTCAAAACAAAA AGCCGCCAAAAACAACG CCAACCTATA CGCTGTTTTTGGCGGCG TTATACGTTTCGGTC TERM 2871 2635292 - 2635251 - f 100 -17.5 -5.45802 | opp_overlap 2635250 2635251 TCGTCAAAACAAAAA GCCGCCAAAAACAACGC CAACCTAT ACGCTGTTTTTGGCGGC GTTATACGTTTCGGT TERM 2872 2635251 - 2635292 + F 95 -14.6 -2.68356 | opp_overlap 2635251, overlap 2635250 TCGTCAAAACAAAAA GCCGCCAAAAACAACG CCAACCTATA CGCTGTTTTTGGCGGC GTTATACGTTTCGGT Shal_2180 2635323 - 2636639 + | hypothetical protein TERM 2873 2639769 - 2639756 - g 70 -5.3 -4.45544 | overlap 2639761 GTGGATCAATTAAAA GCTAA TGGC TTAGC CAACCCAACAAAAAG TERM 2874 2639802 - 2639784 - g 73 -2.4 -5.13741 | overlap 2639786 CCAACCCAACAAAAA GCGAAC TAGGTCC ATTCGC TCCCTACATACCTGA Shal_2181 2637326 - 2640373 + | type III restriction protein res subunit TERM 2875 2640676 - 2640638 - T 86 -9 -4.40963 | opp_overlap 2640645, overlap 2640635 ATTGTCCAAAAACAA TTTAAGTCGTAGTCATCT ATT ATATGGCTACGTCTTAAA ATCTAGTTGTAACCC Shal_2182 2641431 - 2640679 - | deoxyribonuclease I Shal_2183 2642792 - 2641539 - | DNA-directed DNA polymerase TERM 2876 2642283 - 2642324 + g 79 -3 -5.41143 | opp_overlap 2642297, overlap 2642297 AATTGCTGAACGTTG CTCATTGTTAGTAATGGC ACAAAC GCCATTATAACCAGGGAG TTTTTTTGCAGCATG Shal_2184 2643202 - 2642795 - | peptidase S24/S26 domain-containing protein TERM 2877 2643798 - 2643786 - g 76 -4.1 -4.94222 | opp_overlap 2643786, overlap 2643789 AACAACTTACAAAAA GTAGA AAA CCTAC GTGTTTTCAATTCAG Shal_2185 2643546 - 2645762 + | hypothetical protein Shal_2186 2645936 - 2646739 + | FRG domain-containing protein TERM 2878 2646834 - 2646822 - g 77 -3.4 -5.24129 | GCTCGTTACAAAAAA TCGA TACAT TCGA GCCATTCTCCCACTT Shal_2187 2646782 - 2647279 + | hypothetical protein Shal_2188 2648910 - 2647720 - | hypothetical protein TERM 2879 2648649 - 2648615 - G 73 -4.4 -4.77173 | overlap 2648617 CGCTTAGAAAACAAA CTCTCATCACTTAC AGCAATA GTAAGTGATAAAGG AGTACTGAATTGTTC TERM 2880 2648937 - 2648990 + H 93 -9.1 -5.31059 | gap 1, opp_overlap 2648938, overlap 2648938 2648949 ACAGATTATAAATAA ATTATATATCTTTTCTTGATCGGGGC AGC GCCCCGATCAATACTAG-TATATAAG TTTTTTAATTGGTGT TERM 2881 2648938 - 2648989 + H 90 -12.6 -3.77008 | gap 1, opp_overlap 2648938, overlap 2648937 2648949 CAGATTATAAATAAA TTATATATCTTTTCTTGATCGGGGC AGC GCCCCGATCAATACTAG-TATATAA GTTTTTTAATTGGTG TERM 2882 2648989 - 2648938 - H 100 -12.6 -4.60949 | gap 1, opp_overlap 2648937 2648938 2648949 CAGATTATAAATAAA TTATATATCTTTTCTTGATCGGGGC AGC GCCCCGATCAATACTAG-TATATAA GTTTTTTAATTGGTG TERM 2883 2648949 - 2648979 + H 83 -12.6 -2.72438 | opp_overlap 2648938, overlap 2648938 2648937 TAAATTATATATCTT TTCTTGATCGGGGC AGC GCCCCGATCAATAC TAGTATATAAGTTTT TERM 2884 2649257 - 2649274 + G 78 -6.3 -4.62069 | CATACAACCGTCCGT CGCAAGA GATA TTTTGCG TTTTTCAAGTCGAGG Shal_2189 2649018 - 2650208 + | hypothetical protein TERM 2885 2650290 - 2650309 + T 73 -2.1 -5.1861 | opp_overlap 2650285 ACCTAAATAACTCTA CGTCGAG AGTCCG CTTGATG TTTTTTCCTCATCAA Shal_2190 2650764 - 2650321 - | hypothetical protein Shal_2191 2653292 - 2650866 - | hypothetical protein TERM 2886 2651601 - 2651622 + g 74 -3.7 -4.97158 | TGCTAGTTCTTCAAT CGCAAGATG CTGG TATCTTTCG TTTTGTTTGATGTCA TERM 2887 2651732 - 2651745 + g 100 -4.5 -5.93252 | TATGGGTATTAATCT TGGTG AATT CGCCA TTTTTTGTTTTTAGA Shal_2192 2654836 - 2653289 - | integrase family protein TERM 2888 2653852 - 2653863 + g 74 -5.8 -4.6038 | GGATTAGTTCCTTAT TGGC AATT GCCA TTTTGGTTTCGTCTG Shal_2193 2656185 - 2654833 - | phage integrase Shal_2194 2660135 - 2658843 - | integrase family protein Shal_2195 2660467 - 2660222 - | hypothetical protein Shal_2196 2661043 - 2660579 - | hypothetical protein Shal_2197 2661307 - 2662743 + | cytochrome c oxidase, cbb3-type, subunit I Shal_2198 2662756 - 2663370 + | cytochrome c oxidase, cbb3-type, subunit II Shal_2199 2663382 - 2663558 + | Cbb3-type cytochrome oxidase component Shal_2200 2663558 - 2664514 + | cytochrome c oxidase, cbb3-type, subunit III TERM 2889 2664567 - 2664547 - f 100 -13.3 -4.85599 | opp_overlap 2664547 TTGATGTGAGAAAAA GGCCTCGTC ATT AACGAGGCC TTTTTTTAAGTGCTA TERM 2890 2664547 - 2664567 + F 100 -12.6 -5.48825 | opp_overlap 2664547 TTGATGTGAGAAAAA GGCCTCGT CATTA ACGAGGCC TTTTTTTAAGTGCTA TERM 2891 2664959 - 2664979 + G 76 -5.3 -4.88388 | opp_overlap 2664915, overlap 2664960 CGTTAGCTTCTACCA CCCCACTCT CGA AGAGAGGGA TTTTTCTCAAATTGT TERM 2892 2664960 - 2664978 + G 72 -8.8 -3.51948 | overlap 2664959 GTTAGCTTCTACCAC CCCACTCT CGA AGAGAGGG ATTTTTCTCAAATTG Shal_2201 2664663 - 2665142 + | hypothetical protein TERM 2893 2665523 - 2665476 - g 76 -11.6 -2.73681 | opp_overlap 2665500 2665501, overlap 2665479 2665482 2665494 2665498 GATCTACCTGAAGTA CAACAAGACTTTATTCAACAAA GAGA TTCGTTAAACGAAGTCTCGTTG ACGGTCGATGGCATC TERM 2894 2665519 - 2665498 - g 72 -6.7 -4.20783 | gap 1, opp_overlap 2665500 2665501, overlap 2665482 2665479 2665476 2665494 ACTTTATTCAACAAA GAGA-TTCGT TAA ACGAAGTCTC GTTGACGGTCGATGG TERM 2895 2665900 - 2665910 + G 73 -4.6 -4.81212 | GCATGTTGTTTGCTG CGCC TGT GGTG TTTTATTCTGCTCAG Shal_2202 2665236 - 2667620 + | heavy metal translocating P-type ATPase Shal_2203 2667617 - 2667889 + | cytochrome oxidase maturation protein, cbb3-type Shal_2204 2667892 - 2668584 + | hypothetical protein Shal_2205 2668642 - 2669394 + | fumarate/nitrate reduction transcriptional regulator TERM 2896 2669558 - 2669541 - g 89 -11.3 -4.06361 | overlap 2669536 CGACAGATAAGCAAA CGGCTCT TGCC AGAGCCG TAGAATTAGCGTCAA Shal_2206 2669486 - 2670418 + | universal stress protein UspE TERM 2897 2670462 - 2670491 + F 100 -7.7 -5.71712 | opp_overlap 2670460 2670462 TAAGCTGGAATAATA CGCGCCCTGAACA TTTG TGTACTAGGCGCG TTTTTTTATGTCCGA TERM 2898 2670491 - 2670462 - f 75 -9.9 -3.40498 | opp_overlap 2670462, overlap 2670460 TAAGCTGGAATAATA CGCGCCCTGAACA TTTG TGTACTAGGCGCG TTTTTTTATGTCCGA TERM 2899 2670963 - 2670978 + G 83 -6.2 -5.00616 | opp_overlap 2670962 2670963 2670965 CGACATCATTGAAAC CATGTT CCTG AACATG TTTTTTGCCGGCAAG Shal_2207 2670499 - 2671434 + | PP-loop domain-containing protein TERM 2900 2671486 - 2671458 - T 100 -20.5 -3.68761 | opp_overlap 2671464, overlap 2671464 AGCGTAAAAGTAGAA TCAAAAGCCCTGC ATT GCAGGGCTTTTGA TTAAAGAAGAATTAC TERM 2901 2671480 - 2671464 - T 100 -13.7 -4.53685 | opp_overlap 2671464, overlap 2671458 AAAGTAGAATCAAAA GCCCTGC ATT GCAGGGC TTTTGATTAAAGAAG TERM 2902 2671464 - 2671480 + T 100 -13.7 -4.4078 | opp_overlap 2671458 2671464 AAAGTAGAATCAAAA GCCCTGC ATT GCAGGGC TTTTGATTAAAGAAG Shal_2208 2672121 - 2671498 - | hypothetical protein Shal_2209 2672926 - 2672099 - | Bax protein, putative TERM 2903 2672603 - 2672626 + g 72 -6 -4.45068 | GATCTGCTGCAGTCT GAACTCATCG GCCT CAGTGAGTTC TTTGTTATTGACGAT Shal_2210 2673087 - 2673998 + | protein of unknown function UPF0052 and CofD Shal_2211 2674253 - 2674771 + | HPP family protein? TERM 2904 2674806 - 2674832 + T 95 -11.7 -4.20806 | gap 1, opp_overlap 2674806 TTTAAGCATAAAAAA TGCGCG-TAGTG GGTT CACTAACGCGCA TTTAGTTTTGCAATG TERM 2905 2674832 - 2674806 - T 100 -11.7 -5.37345 | gap 1, opp_overlap 2674806 TTTAAGCATAAAAAA TGCGCG-TAGTG GGTT CACTAACGCGCA TTTAGTTTTGCAATG Shal_2212 2676082 - 2674889 - | aromatic amino acid aminotransferase TERM 2906 2675238 - 2675250 + g 80 -6.9 -4.56914 | opp_overlap 2675238 GGGTTCGAATAAGAC GCGCG GAT CGTGC TTTTAATTTGGCTAA TERM 2907 2676384 - 2676365 - R 100 -12.2 -5.86976 | opp_overlap 2676365 CGAGAAAACAAAAAA GCCTTCAC GTTA GTGAAGGC TTTTTGCGATTGGGC TERM 2908 2676365 - 2676384 + r 100 -12.2 -4.66833 | opp_overlap 2676365 CGAGAAAACAAAAAA GCCTTCAC GTTA GTGAAGGC TTTTTGCGATTGGGC TERM 2909 2676399 - 2676417 + r 75 -3 -5.24129 | overlap 2676394 2676400 CTTTTTGCGATTGGG CCGGCTCA ATA TTAGCCGA TTTTTTCTAGGCCGC Shal_2213 2677696 - 2676410 - | seryl-tRNA synthetase TERM 2910 2677033 - 2677089 + g 71 -9.6 -3.19081 | overlap 2677016 CTTCTTCAGTAGCAG GCTTAGTGTGGAACAGGTCTTC-ACCAA ACT TTGGTAGTTGGCCTGTACC-CATTAAGC TGTCTTCATTAACTA Shal_2214 2678089 - 2677715 - | CrcB protein Shal_2215 2679413 - 2678082 - | recombination factor protein RarA Shal_2216 2680049 - 2679423 - | outer membrane lipoprotein carrier protein LolA TERM 2911 2680057 - 2680089 + r 81 -12.1 -2.53517 | opp_overlap 2680067, overlap 2680056 2680054 2680052 TTTTTCATTTTGTTC TCCGAGTTAAGCCTA CTC TAGGCTTAACACTGA ATATATTCTGTGGGT Shal_2217 2682706 - 2680124 - | cell divisionFtsK/SpoIIIE TERM 2912 2682853 - 2682879 + r 72 -9.5 -3.024 | opp_overlap 2682858, overlap 2682858 TTGGATTTTGTATAA AAAAAGGAGCC CTCAA GGCTCCTTTTG TCATTTAATATATTA TERM 2913 2682858 - 2682874 + r 91 -9.4 -4.63172 | opp_overlap 2682858, overlap 2682853 TTTTGTATAAAAAAA GGAGCC CTCAA GGCTCC TTTTGTCATTTAATA TERM 2914 2682874 - 2682858 - R 100 -10.1 -5.60993 | opp_overlap 2682858 2682853 TTTTGTATAAAAAAA GGAGCCC TCA AGGCTCC TTTTGTCATTTAATA Shal_2218 2683399 - 2682896 - | leucine-responsive transcriptional regulator TERM 2915 2683539 - 2683553 + H 79 -5.7 -4.86033 | opp_overlap 2683539 AATATAACAATTACA CCCAT ATAAA ATGGG TTTTTATGCAAATTT TERM 2916 2683626 - 2683612 - g 79 -4.2 -5.1517 | opp_overlap 2683613, overlap 2683613 AAAAGAAATCAAAAA TCACGA ATA TCGTGT TGGTATGGTCCCATC Shal_2219 2683580 - 2684695 + | alanine dehydrogenase TERM 2917 2684722 - 2684682 - T 100 -14.4 -3.91897 | opp_overlap 2684684 2684692, overlap 2684721 TTGTCGATCCACAAA TATTACTTAAGTAACTCG AAAAA CTAGTTACTTAAGTAATA TGTAGGGAGCCGCAG TERM 2918 2684684 - 2684720 + T 83 -12.6 -2.87132 | opp_overlap 2684682, overlap 2684692 GTCGATCCACAAATA TTACTTAAGTAACTCG AAAAA CTAGTTACTTAAGTAA TATGTAGGGAGCCGC TERM 2919 2684727 - 2684743 + T 100 -13.7 -4.28774 | opp_overlap 2684724 2684723 2684721 CTTAAGTAATATGTA GGGAGCC GCA GGCTCCC TTTTAAGTTCCCTAA Shal_2220 2685724 - 2685041 - | two component transcriptional regulator TERM 2920 2685843 - 2685868 + r 93 -13.3 -3.30903 | opp_overlap 2685845, overlap 2685845 TATCGGAGTACAAAA AAGCCGCTCGT TTTT ACGAGCGGCTG TTATACCAAGCTTTT TERM 2921 2685866 - 2685845 - R 100 -15.9 -5.31275 | opp_overlap 2685843 2685845 TCGGAGTACAAAAAA GCCGCTCGT TTTT ACGAGCGGC TGTTATACCAAGCTT TERM 2922 2685845 - 2685866 + r 100 -15.9 -3.21772 | opp_overlap 2685845, overlap 2685843 TCGGAGTACAAAAAA GCCGCTCGT TTTT ACGAGCGGC TGTTATACCAAGCTT Shal_2221 2687702 - 2685930 - | hypothetical protein TERM 2923 2687841 - 2687796 - R 81 -11.3 -2.93723 | opp_overlap 2687796, overlap 2687791 2687809 TTTTCAGTAACTATA CTCAGTTTGACAACCTTTGTT ACAC AACAAAGACAGCCAAACAGAG TCAGTTAATAGCCGA Shal_2222 2689847 - 2687898 - | ATP-dependent DNA helicase RecQ TERM 2924 2688690 - 2688716 + g 73 -9.5 -3.32536 | GATGTTGGACGCTGT TGAGAGCTGAT TAAGC ATCAGCTCCCA TTGTGGGCCTAGTTT Shal_2223 2690787 - 2689906 - | endonuclease/exonuclease/phosphatase Shal_2224 2690957 - 2692414 + | cardiolipin synthetase TERM 2925 2692434 - 2692474 + F 70 -7.8 -3.69092 | gap 1, opp_overlap 2692453, overlap 2692437 2692438 TGCGATCACTTTATT CATTGGCTTGATGAACGTA TTAA TGCGTTCATCAAG-CAGTA TTTCCCATTAATCTT TERM 2926 2692437 - 2692472 + F 86 -12 -3.41936 | opp_overlap 2692453, overlap 2692434 2692438 GATCACTTTATTCAT TGGCTTGATGAACGTA TTAA TGCGTTCATCAAGCAG TATTTCCCATTAATC TERM 2927 2692438 - 2692471 + F 90 -13.3 -2.64679 | opp_overlap 2692453, overlap 2692437 2692434 ATCACTTTATTCATT GGCTTGATGAACGTA TTAA TGCGTTCATCAAGCA GTATTTCCCATTAAT Shal_2225 2692570 - 2692764 + | hypothetical protein Shal_2226 2694971 - 2693235 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 2928 2695018 - 2695038 + r 70 -2.5 -5.10933 | opp_overlap 2695018, overlap 2695013 2695020 GCTTAATAAGAAAAA GCCGAGA TGAGGTC TCTCGAC TTTTCTTTTGCCTGC TERM 2929 2695038 - 2695018 - R 80 -4.7 -5.29445 | opp_overlap 2695013 2695018 2695020 GCTTAATAAGAAAAA GCCGAGA TGAGGTC TCTCGAC TTTTCTTTTGCCTGC Shal_2227 2697138 - 2695069 - | endonuclease I Shal_2228 2700372 - 2697232 - | endonuclease/exonuclease/phosphatase Shal_2229 2701466 - 2700414 - | hypothetical protein TERM 2930 2701978 - 2701968 - R 75 -5.4 -4.73633 | GAAGAATAGATAAAA TGGA TAT TCCA TACACTATAAAAACT TERM 2931 2702080 - 2702066 - R 70 -3.5 -4.85894 | AAACTAAACATAAAA CCACA GTCTT CGTGG TAACCCATATATGAA TERM 2932 2702801 - 2702828 + r 90 -12.8 -3.4678 | opp_overlap 2702803, overlap 2702803 ATTTTAGACAGCAAA AAGCCCGTTATC TTGC GATAACGGGCTC TTCTAATATGGCGGT TERM 2933 2702803 - 2702826 + r 100 -15.4 -3.30651 | opp_overlap 2702803, overlap 2702801 TTTAGACAGCAAAAA GCCCGTTATC TTGC GATAACGGGC TCTTCTAATATGGCG TERM 2934 2702826 - 2702803 - R 100 -15.4 -4.84527 | opp_overlap 2702803 2702801 TTTAGACAGCAAAAA GCCCGTTATC TTGC GATAACGGGC TCTTCTAATATGGCG Shal_2230 2705100 - 2703106 - | methyl-accepting chemotaxis sensory transducer TERM 2935 2705216 - 2705195 - R 93 -9.5 -5.00884 | opp_overlap 2705195 2705198, overlap 2705169 ATTTGTTTCAAAAAA TAAGCCCGT ATTA ACGAGCTTA TTGTTATAGATCAAG TERM 2936 2705195 - 2705216 + r 71 -7.3 -3.8211 | opp_overlap 2705169 2705195, overlap 2705198 ATTTGTTTCAAAAAA TAAGCCCGT ATTA ACGAGCTTA TTGTTATAGATCAAG TERM 2937 2705269 - 2705231 - R 100 -18.6 -3.322 | opp_overlap 2705242, overlap 2705242 ATTGTTATAGATCAA GTTTTATACAACTGCATA AGT TATGCAGTTATATAAAAC ATTGAAATAACAGGT TERM 2938 2705242 - 2705258 + r 77 -9.5 -3.494 | opp_overlap 2705231 2705242 TCAAGTTTTATACAA CTGCATA AGT TATGCAG TTATATAAAACATTG TERM 2939 2705258 - 2705242 - R 77 -9.5 -3.50447 | opp_overlap 2705242, overlap 2705231 TCAAGTTTTATACAA CTGCATA AGT TATGCAG TTATATAAAACATTG Shal_2231 2706358 - 2705291 - | quinolinate synthetase TERM 2940 2706448 - 2706467 + r 75 -7.8 -4.10429 | opp_overlap 2706449, overlap 2706449 2706466 TAATAGAAATAAAAA AGGCGCTA TCAC TAGCGCCA TTTTACAAAATGCTT TERM 2941 2706466 - 2706449 - R 100 -11.3 -5.7827 | opp_overlap 2706449 2706448 AATAGAAATAAAAAA GGCGCTA TCAC TAGCGCC ATTTTACAAAATGCT TERM 2942 2706449 - 2706466 + r 81 -11.3 -3.05775 | opp_overlap 2706449, overlap 2706448 AATAGAAATAAAAAA GGCGCTA TCAC TAGCGCC ATTTTACAAAATGCT Shal_2232 2708128 - 2706488 - | dihydrolipoamide acetyltransferase Shal_2233 2709115 - 2708138 - | transketolase central region Shal_2234 2710297 - 2709119 - | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) TERM 2943 2710433 - 2710464 + r 83 -11 -3.78234 | opp_overlap 2710430 2710427, overlap 2710428 CATAACTAAGCATGT CTGTGCATGTATAT ATTG GTTTACATGCACAG TTATTCAGTTTGAAT Shal_2235 2711580 - 2710480 - | succinylglutamate desuccinylase TERM 2944 2710717 - 2710707 - G 71 -6.8 -4.06904 | opp_overlap 2710707, overlap 2710703 TTATCGAACGACAAA CCTG ATA CAGG TTTAAACGTTTCATA Shal_2236 2711798 - 2712277 + | peptide methionine sulfoxide reductase TERM 2945 2712827 - 2712842 + T 79 -9 -3.86063 | CCCCAAAGTTGGTTA GCCTTC TAAT GAAGGC TTATTGCATTTTTAT TERM 2946 2713027 - 2713062 + T 100 -17 -2.89881 | gap 1 CCGTCCTTGGAAGCT CGGCCATGA-CGTCCAT ATC ATGGACGGTCACGGCCG TATCTGCACTAAATA Shal_2237 2713722 - 2713279 - | hypothetical protein TERM 2947 2714261 - 2714246 - R 93 -10.4 -5.05577 | opp_overlap 2714246 AAATCAAATGAAAAA GCCCCA AAAT TGGGGC TTCTTATTGTTATGT TERM 2948 2714246 - 2714261 + r 89 -10.4 -4.14147 | opp_overlap 2714246 AAATCAAATGAAAAA GCCCCA AAAT TGGGGC TTCTTATTGTTATGT Shal_2238 2716051 - 2714411 - | phosphoglucomutase TERM 2949 2715719 - 2715705 - G 76 -8.6 -4.07568 | opp_overlap 2715694 GGTGTGGGGGTAAAA CCATCA TTT TGATGG ACCACAACGCTGATT Shal_2239 2716747 - 2716127 - | replication initiation regulator SeqA TERM 2950 2716847 - 2716863 + H 70 -3 -5.02074 | opp_overlap 2716838 AAAGATCCTATTTAC TAGGCA ATCAA TGTCTA TTTTTTCGGCACTAA Shal_2240 2716965 - 2717723 + | alpha/beta hydrolase fold TERM 2951 2717843 - 2717869 + G 74 -3.7 -5.01732 | ATGCAATATATGGAG CAGATTGAAGC ACTCG GCTTAAACCTG TTTTTTGCAGCCATT TERM 2952 2717975 - 2717989 + G 79 -9.2 -4.15044 | TGGCTAGTTTTATTT CTCGGC TGC GCCGGG TTTATTGCAAAAGGG Shal_2241 2717822 - 2718043 + | hypothetical protein Shal_2242 2718055 - 2718327 + | LexA regulated protein TERM 2953 2718337 - 2718307 - f 76 -10.6 -2.66912 | opp_overlap 2718312, overlap 2718312 2718315 ATCGAATCGATACTA CAAAAGCAGGTTAG TGA CTAACCCACTTTTA AATGCACGCATACCA TERM 2954 2718332 - 2718312 - f 87 -8.3 -4.51378 | opp_overlap 2718312, overlap 2718307 2718315 ATCGATACTACAAAA GCAGGTTAG TGA CTAACCCAC TTTTAAATGCACGCA Shal_2243 2718385 - 2718912 + | flavodoxin FldA TERM 2955 2718961 - 2718980 + F 100 -12.2 -5.4492 | opp_overlap 2718961 CGCATTCCTGTAAAA GCGGCATA TTAT TATGCCGC TTTTTTGTCTCTATG TERM 2956 2718980 - 2718961 - f 91 -12.2 -4.08767 | opp_overlap 2718961 CGCATTCCTGTAAAA GCGGCATA TTAT TATGCCGC TTTTTTGTCTCTATG Shal_2244 2719062 - 2720255 + | hypothetical protein TERM 2957 2720289 - 2720279 - f 85 -5.4 -5.19879 | GTTTAAATAGAAAAA CCTA AAA TAGG AAATAGTGTAATGAA Shal_2245 2720300 - 2720860 + | elongation factor P TERM 2958 2720901 - 2720884 - f 79 -9.1 -3.86346 | opp_overlap 2720884, overlap 2720872 CCATGCTTTGATAAA GCCAGCA TATA CGCTGGC TTTTTTTTGGCTGAA TERM 2959 2720884 - 2720901 + F 100 -8.4 -5.81412 | opp_overlap 2720872 2720884 CCATGCTTTGATAAA GCCAGC ATATAC GCTGGC TTTTTTTTGGCTGAA Shal_2246 2721215 - 2722429 + | aminotransferase AlaT TERM 2960 2722579 - 2722566 - f 86 -8.1 -4.89852 | opp_overlap 2722566 CTAGACTGATAAAAA CGACC TACG GGTCG TTTTTTTGTATTATA TERM 2961 2722566 - 2722579 + F 100 -8.1 -5.84432 | opp_overlap 2722566 CTAGACTGATAAAAA CGACC TACG GGTCG TTTTTTTGTATTATA Shal_2247 2722644 - 2723231 + | hypothetical protein Shal_2248 2723252 - 2724586 + | deoxyguanosinetriphosphate triphosphohydrolase-like protein TERM 2962 2724675 - 2724691 + T 100 -12.3 -5.00616 | opp_overlap 2724675 TAATGCAATAAAAAA GGCACTC ATT GAGTGCC TTTTTTAGCAAGACA TERM 2963 2724691 - 2724675 - T 100 -12.3 -5.5074 | opp_overlap 2724675 TAATGCAATAAAAAA GGCACTC ATT GAGTGCC TTTTTTAGCAAGACA Shal_2249 2725360 - 2724737 - | hypothetical protein TERM 2964 2725355 - 2725337 - G 84 -4.7 -5.27923 | TAAGCCGAGAAAAAA TTTAACA TAGAG TGTTAAA TCCAACGTCTTATCC TERM 2965 2725377 - 2725387 + H 70 -8.2 -3.70722 | GTCTTATCCTCAACG CGCC CAA GGCG TTATCTGTTCATAAA TERM 2966 2725460 - 2725444 - H 88 -3 -5.93252 | CTTAAAAACAAAAAA TGAGAT TTTCT ATCCCA AATCACAACTTTGAA TERM 2967 2725647 - 2725671 + H 93 -10.9 -5.055 | opp_overlap 2725646 2725645 2725637 GAGCACCGGAGAATG TTTAGCCAAAT ACC GTTTGGCTAAA TTTTTTCAGGATTGC TERM 2968 2725974 - 2725944 - g 76 -2.5 -5.34055 | opp_overlap 2725946, overlap 2725945 2725946 2725966 ATAAAGATGAAAAAA CCTGCGGGATCCT ATCTG AAGATCCCACATT TGGAACCATCACCAT TERM 2969 2727775 - 2727760 - g 74 -10.4 -3.14229 | overlap 2727758 AGACGCCTACGAACA TGGCGC CAAT GCGCCA GTGGCTCGTGAAAAA TERM 2970 2728110 - 2728098 - g 76 -2 -5.41143 | CACTGCTTAAAAAAA TTGA TGAAC TCAA AGAGACGATTGGCAT Shal_2250 2725691 - 2728306 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase TERM 2971 2728347 - 2728327 - T 93 -11.1 -4.7497 | opp_overlap 2728327 TTTAGTCATTAAAAA GCCCTAGCC TTC GGTTAGGGC TTTTTGCTGTGCCTA TERM 2972 2728327 - 2728347 + T 100 -13.3 -4.81551 | opp_overlap 2728327 TTTAGTCATTAAAAA GCCCTAGCC TTC GGTTAGGGC TTTTTGCTGTGCCTA Shal_2251 2730565 - 2728391 - | malate synthase G Shal_2252 2731752 - 2730808 - | LysR family transcriptional regulator TERM 2973 2731494 - 2731506 + g 78 -5.5 -4.83169 | CATTAAACTTGGCTC GTGGT TGA ACCGC TTTTTCTAAGCCAAT Shal_2253 2731863 - 2733446 + | isocitrate lyase TERM 2974 2733530 - 2733511 - f 73 -7.8 -3.84961 | opp_overlap 2733512, overlap 2733512 GAGCTAATTATGAAA GGCCTGCT AAAG AGCAGGCT TTTTTATATCGAGTA TERM 2975 2733529 - 2733512 - f 80 -11.3 -2.90494 | opp_overlap 2733512, overlap 2733511 AGCTAATTATGAAAG GCCTGCT AAAG AGCAGGC TTTTTTATATCGAGT TERM 2976 2733512 - 2733529 + F 100 -11.3 -5.37043 | opp_overlap 2733511 2733512 AGCTAATTATGAAAG GCCTGCT AAAG AGCAGGC TTTTTTATATCGAGT Shal_2254 2733919 - 2734500 + | hypothetical protein TERM 2977 2734650 - 2734600 - T 93 -13.1 -3.41745 | opp_overlap 2734606 2734616, overlap 2734616 CTTTGAGAATATCAA TCTGT-ATAAGCAAAAAGCCAGAAT GAT ATTCTGGCTTTTTG-TTATTACTGA CGCTACAACGGTTTA TERM 2978 2734606 - 2734643 + T 100 -15.3 -3.15544 | gap 1, opp_overlap 2734600 2734616, overlap 2734616 GAATATCAATCTGTA TAAGCAAAAAGCCAGAAT GAT ATTCTGGCTTTTTG-TTA TTACTGACGCTACAA TERM 2979 2734616 - 2734634 + T 100 -11.8 -5.31855 | opp_overlap 2734600 2734616, overlap 2734606 CTGTATAAGCAAAAA GCCAGAAT GAT ATTCTGGC TTTTTGTTATTACTG TERM 2980 2734634 - 2734616 - T 100 -11.8 -4.93365 | opp_overlap 2734616 2734606, overlap 2734600 CTGTATAAGCAAAAA GCCAGAAT GAT ATTCTGGC TTTTTGTTATTACTG Shal_2255 2736718 - 2734667 - | peptidase S9 prolyl oligopeptidase TERM 2981 2735743 - 2735755 + g 74 -3.3 -5.06816 | GGCTGCGATCCCACA GTGGT GCA ACCTC TTTTTCTTGGCCAGT TERM 2982 2736462 - 2736479 + g 71 -6.9 -4.02108 | CTGTGCTCTGTACCC GCAGCAC TGGT GAGCTGC TTTGCTTGTGATGAA TERM 2983 2736835 - 2736859 + r 77 -8.6 -3.85522 | opp_overlap 2736824 2736835 AGTAGCCAAAATAAA TGGCTTAAGC AATAC GCCTAAGCCA TTGTTCTAATCCGTT TERM 2984 2736859 - 2736835 - R 95 -11.5 -4.6951 | opp_overlap 2736835, overlap 2736824 AGTAGCCAAAATAAA TGGCTTAAGCA ATA CGCCTAAGCCA TTGTTCTAATCCGTT Shal_2256 2738428 - 2736908 - | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit Shal_2257 2738607 - 2740244 + | para-aminobenzoate synthase, subunit I Shal_2258 2740296 - 2740877 + | NUDIX hydrolase Shal_2259 2741317 - 2740982 - | hypothetical protein Shal_2260 2741469 - 2742869 + | asparaginyl-tRNA synthetase TERM 2985 2742928 - 2742903 - f 88 -11.3 -3.50869 | overlap 2742904 TAGTAGCTTACAGAA CTGCTAGCTTA CCGG TAAGCTAGCAA CGATATTAAAGCCTC TERM 2986 2742927 - 2742904 - f 83 -12.6 -2.702 | overlap 2742903 AGTAGCTTACAGAAC TGCTAGCTTA CCGG TAAGCTAGCA ACGATATTAAAGCCT TERM 2987 2742940 - 2742962 + F 100 -4.8 -5.90231 | opp_overlap 2742940 GCAACGATATTAAAG CCTCTTTCAT TAT ATGTCAGAGG TTTTTTTATATTTAT TERM 2988 2743980 - 2743964 - g 74 -10.9 -2.87051 | opp_overlap 2743964, overlap 2743963 GCCGCAGCACCAAAT CCAACAG GAG CTGTTGG TGTATCCGAAGTCAT TERM 2989 2743964 - 2743980 + G 74 -10.9 -2.8805 | opp_overlap 2743964 2743963 GCCGCAGCACCAAAT CCAACAG GAG CTGTTGG TGTATCCGAAGTCAT Shal_2261 2743376 - 2744512 + | hydrogenase (NiFe) small subunit HydA Shal_2262 2744515 - 2746218 + | nickel-dependent hydrogenase large subunit Shal_2263 2746233 - 2746901 + | Ni/Fe-hydrogenase, b-type cytochrome subunit TERM 2990 2746945 - 2746972 + G 100 -18.6 -3.79668 | GTATTGGCAATGTCT TGTACGCCGATG AGGG CATCGGCGTACA TTTCGTCAATTACAT Shal_2264 2746911 - 2747468 + | hydrogenase maturation protease Shal_2265 2747455 - 2749236 + | hypothetical protein TERM 2991 2749293 - 2749314 + G 72 -5.8 -4.43571 | TACAGCTAAAGATCA CCGGCATC GTTCAA GGTGTCGG TTTTCGTCCTTTTGT Shal_2266 2749250 - 2751637 + | (NiFe) hydrogenase maturation protein HypF TERM 2992 2751733 - 2751723 - f 78 -4 -5.33026 | TAACTTAAACAAAAA TAAC GGA GTTA CCTATGTGCCAAGAC Shal_2267 2751737 - 2752498 + | hydrogenase accessory protein HypB Shal_2268 2752498 - 2752746 + | hydrogenase assembly chaperone hypC/hupF TERM 2993 2753393 - 2753372 - g 82 -10.9 -3.54741 | gap 1 GATTAGTGGCGCAAA GGTCTACCGC CCT GCGGT-GACC AATTACAATACTCCT Shal_2269 2752746 - 2753867 + | hydrogenase expression/formation protein HypD Shal_2270 2753864 - 2754880 + | hydrogenase expression/formation protein HypE Shal_2271 2754880 - 2755227 + | hydrogenase expression/synthesis HypA TERM 2994 2755271 - 2755242 - T 75 -10.1 -3.25072 | opp_overlap 2755242 2755245, overlap 2755245 GTGACTATAACGGAA TAAGCCCTACTAT TCAT ATTGTAGGGCCTA TTATTGTTGTTTCTA TERM 2995 2755242 - 2755271 + T 77 -7.9 -4.18443 | opp_overlap 2755242 2755245, overlap 2755245 GTGACTATAACGGAA TAAGCCCTACTAT TCAT ATTGTAGGGCCTA TTATTGTTGTTTCTA TERM 2996 2755245 - 2755268 + T 71 -9.6 -2.78006 | opp_overlap 2755245 2755242, overlap 2755242 ACTATAACGGAATAA GCCCTACTAT TCAT ATTGTAGGGC CTATTATTGTTGTTT TERM 2997 2755268 - 2755245 - T 79 -9.6 -3.76168 | opp_overlap 2755242 2755245, overlap 2755242 ACTATAACGGAATAA GCCCTACTAT TCAT ATTGTAGGGC CTATTATTGTTGTTT Shal_2272 2756422 - 2755415 - | TPR repeat-containing protein Shal_2273 2757461 - 2756499 - | type II secretion system protein Shal_2274 2758440 - 2757463 - | type II secretion system protein Shal_2275 2759780 - 2758452 - | type II secretion system protein E Shal_2276 2761008 - 2759782 - | Flp pilus assembly protein ATPase CpaE-like protein Shal_2277 2761550 - 2761101 - | TadE family protein TERM 2998 2761411 - 2761427 + g 73 -10.1 -3.30214 | opp_overlap 2761400 2761397 ACCACAGCAATCCTT GCTGCGC GAC GTGCAGC TTCATGTAATACATT Shal_2278 2762026 - 2761547 - | TadE family protein TERM 2999 2761651 - 2761637 - G 76 -4.2 -5.0133 | TAGCCTGTCAAAAAA GATAGG CGT CCAATC ATAATCGACGGAAAT Shal_2279 2763377 - 2762037 - | hypothetical protein Shal_2280 2763646 - 2763398 - | hypothetical protein Shal_2281 2765160 - 2763724 - | type II and III secretion system protein Shal_2282 2766021 - 2765209 - | SAF domain-containing protein Shal_2283 2767376 - 2766054 - | AAA ATPase Shal_2284 2767953 - 2767387 - | peptidase A24A prepilin type IV TERM 3000 2768003 - 2767979 - R 89 -10.1 -4.2679 | opp_overlap 2767979 2767998, overlap 2767995 2767998 TAACTTTCATCAAAA GATTACTCACC TAA AGTGAGCAATC TTCAATCTGATTGCT Shal_2285 2768226 - 2768029 - | hypothetical protein TERM 3001 2768171 - 2768183 + g 77 -9.1 -3.93782 | opp_overlap 2768169 ATGGCATACTCAACT GCGGT TAA ACCGC TTTCATCTTCGATAA Shal_2286 2769174 - 2768773 - | transposase and inactivated derivative TERM 3002 2768916 - 2768926 + g 74 -5.4 -4.55798 | overlap 2768917 CATAACTCTTAAGTT GCAA AAG TTGC TTTTGGTTTAGAATA Shal_2287 2770501 - 2769167 - | peptidoglycan binding domain-containing protein TERM 3003 2772728 - 2772747 + G 75 -2.8 -5.12971 | opp_overlap 2772729 2772730 2772732, overlap 2772730 TTGGACAGCAGAACA AGTATCGC CTAA GCGATATG TTTTTGTTGAGTCTT TERM 3004 2772730 - 2772745 + G 73 -7.6 -4.17914 | opp_overlap 2772729 2772730 2772732, overlap 2772728 GGACAGCAGAACAAG TATCGC CTAA GCGATA TGTTTTTGTTGAGTC Shal_2288 2771079 - 2773133 + | sulfatase TERM 3005 2774055 - 2774065 + G 72 -3.2 -5.03994 | TAAAAAGTGCGACCT TCCT ACC GGGA TTTTTCTATCTAAAA Shal_2289 2773217 - 2775010 + | glycosyl transferase family protein TERM 3006 2775652 - 2775666 + G 73 -10 -3.41569 | opp_overlap 2775652 2775651 2775654, overlap 2775651 ATACCAATCCCAAAC GACGAG AGT CTCGTC TGTTTAAATCAATCC Shal_2290 2775048 - 2776079 + | glycosyl transferase family protein TERM 3007 2776912 - 2776891 - g 73 -10.2 -3.10701 | CAAATACCTAGCCAA CGCAGTGA TTAATG TCACTGCG ATTGAACTTACATAT Shal_2291 2776256 - 2776972 + | methyltransferase type 11 Shal_2292 2776953 - 2778044 + | hypothetical protein Shal_2293 2778041 - 2779093 + | glycosyl transferase family protein Shal_2294 2779090 - 2780046 + | hypothetical protein TERM 3008 2780085 - 2780130 + T 85 -11.4 -3.322 | gap 1, opp_overlap 2780083 2780093 AGGATACCGATAAGC GTTAATCACGCTAATGAGTCG ATGAC CGAGTCATTAGCG-GAATAAC TTAATATATGAAGCT TERM 3009 2780123 - 2780093 - T 90 -13.4 -2.74019 | opp_overlap 2780085, overlap 2780083 GATAAGCGTTAATCA CGCTAATGAGTCGA TGA CCGAGTCATTAGCG GAATAACTTAATATA Shal_2295 2781366 - 2780152 - | Fmu (Sun) domain-containing protein TERM 3010 2781461 - 2781441 - R 93 -10.4 -4.88228 | opp_overlap 2781441 AGCTAATAGTAAAAA GCCGCTAC ACAAG GCAGCGGC TTAATAGAGTTATAA Shal_2296 2782013 - 2781498 - | malate synthase TERM 3011 2782188 - 2782172 - g 73 -4.5 -4.90906 | TTACAAGATGAAAAA TAATCAA AGC TTGATCA GAAAATCACATTTTT TERM 3012 2782475 - 2782488 + G 72 -3.1 -5.06451 | gap 1, overlap 2782465 2782475 TAGTGGCATGGCATT GG-AGC CAA GCTTCC TTTTTTCGAATGATA Shal_2297 2782164 - 2783699 + | XRE family transcriptional regulator TERM 3013 2783799 - 2783769 - T 84 -7.9 -4.72272 | gap 1, opp_overlap 2783769 TGTTGTGAGTAAAAA GATAAACAGAAGTA GCAG TA-TTCTGTTTATC TTAATATTCACTAAA Shal_2298 2784082 - 2783810 - | hypothetical protein TERM 3014 2784121 - 2784089 - R 72 -9.4 -3.03012 | gap 2, overlap 2784086 ATTAGTCACAAACGA TCCATGATTGGCGATG TTA CATC-CCA-TCATGGA AAGAGACACTGCCAA Shal_2299 2784806 - 2784309 - | GreA/GreB family elongation factor Shal_2300 2785123 - 2785995 + | hypothetical protein TERM 3015 2786056 - 2786031 - T 100 -11.2 -5.24796 | opp_overlap 2786031 2786028 GTTAGATAATAAAAA GCCCAATCGC TTAACT GCAATTGGGC TCCTATTTATATCTA Shal_2301 2787248 - 2786103 - | cupin 4 family protein Shal_2302 2787445 - 2788086 + | DNA polymerase III, epsilon subunit TERM 3016 2788089 - 2788126 + T 100 -15.1 -4.76041 | opp_overlap 2788091, overlap 2788078 2788091 ACGCCAGCGCTAACA AACAGCACTGTTTAATC GTAA GATTAGACAGTGCTGTA TTTTTAATGCCTGTG TERM 3017 2788124 - 2788091 - T 100 -15.5 -4.16842 | opp_overlap 2788078 2788091 2788089 GCCAGCGCTAACAAA CAGCACTGTTTAATC GTAA GATTAGACAGTGCTG TATTTTTAATGCCTG TERM 3018 2788091 - 2788124 + T 100 -17.7 -3.99327 | opp_overlap 2788091, overlap 2788078 2788089 GCCAGCGCTAACAAA CAGCACTGTTTAATC GTAA GATTAGACAGTGCTG TATTTTTAATGCCTG Shal_2303 2789010 - 2788315 - | hypothetical protein Shal_2304 2789399 - 2791039 + | methyl-accepting chemotaxis sensory transducer Shal_2305 2791142 - 2791528 + | hypothetical protein Shal_2306 2791600 - 2791857 + | phosphotransferase system, phosphocarrier protein HPr TERM 3019 2792818 - 2792798 - g 75 -2.6 -5.14563 | overlap 2792800 TGCCCGATGAAAAAA CTCAATAT CATTT ATATTGCG ATGCCCTGCATTTAA TERM 3020 2793176 - 2793200 + G 70 -4.9 -4.45083 | opp_overlap 2793174 CAGCCGTACTTAACC TCGAGTCGATG CTA CCTCTGCTCGA TTTTATCAGTATCGG Shal_2307 2791867 - 2793570 + | phosphoenolpyruvate-protein phosphotransferase Shal_2308 2793632 - 2794141 + | glucose-specific PTS system component TERM 3021 2794183 - 2794166 - f 88 -8.5 -4.73613 | opp_overlap 2794166, overlap 2794161 GTACTATCAATAAAA GCCTAAT TTTT ATTAGGC TTTTTCATCAACGCA TERM 3022 2794166 - 2794183 + F 88 -8.5 -4.72272 | opp_overlap 2794161 2794166 GTACTATCAATAAAA GCCTAAT TTTT ATTAGGC TTTTTCATCAACGCA Shal_2309 2794269 - 2794658 + | arsenate reductase and related TERM 3023 2795628 - 2795600 - g 73 -2.3 -5.26875 | overlap 2795616 GCTGCAATCAAAAAA GTTACTGGAACGA ATA CCGATCCACAAAC ATCGGGTGGCACGTC Shal_2310 2794655 - 2795800 + | succinyl-diaminopimelate desuccinylase TERM 3024 2796377 - 2796365 - g 71 -3.3 -4.76041 | opp_overlap 2796365 TAGACTCAGTAAAAA CAGTC TTA GCCTG TTGTGATATTTTACA Shal_2311 2795791 - 2796492 + | peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin Shal_2312 2796521 - 2797369 + | alpha/beta hydrolase fold Shal_2313 2797620 - 2798234 + | carbonate dehydratase TERM 3025 2798295 - 2798264 - f 91 -8.1 -5.33331 | gap 1, opp_overlap 2798264 TAAACATAATAAAAA GGGTTATCTCAAGC GATTT GCT-GAGATAGCCC TTTTTTTTAGCAATC TERM 3026 2798264 - 2798295 + F 100 -11 -5.76949 | gap 1, opp_overlap 2798264 TAAACATAATAAAAA GGGTTATCTCAAGCG ATT TGCT-GAGATAGCCC TTTTTTTTAGCAATC Shal_2314 2798436 - 2799620 + | DegT/DnrJ/EryC1/StrS aminotransferase Shal_2315 2799701 - 2800771 + | iron-containing alcohol dehydrogenase TERM 3027 2800786 - 2800818 + F 72 -3.4 -5.09895 | opp_overlap 2800792, overlap 2800787 2800790 AACTCTAGCGTAAGC ATAGAATGGGCTTC AAAAA GAAGCCCATGATAC TTTTTTAAGTAGGTA TERM 3028 2800812 - 2800792 - f 88 -11.2 -3.60214 | opp_overlap 2800790 2800787 2800786 AGCGTAAGCATAGAA TGGGCTTC AAAAA GAAGCCCA TGATACTTTTTTAAG Shal_2316 2800840 - 2801577 + | 3-deoxy-manno-octulosonate cytidylyltransferase Shal_2317 2801591 - 2801824 + | hypothetical protein TERM 3029 2801891 - 2801915 + T 93 -11.5 -4.54727 | opp_overlap 2801896, overlap 2801896 CGAATAAAACTCACA AAAAAGGCGCT ATC AGCGCCTTTTC TTTTGATTTGAAAGC TERM 3030 2801910 - 2801896 - T 100 -11.4 -5.35222 | opp_overlap 2801896 2801891 AAAACTCACAAAAAA GGCGCT ATC AGCGCC TTTTCTTTTGATTTG TERM 3031 2801896 - 2801910 + T 100 -11.4 -5.22258 | opp_overlap 2801896, overlap 2801891 AAAACTCACAAAAAA GGCGCT ATC AGCGCC TTTTCTTTTGATTTG Shal_2318 2805064 - 2801972 - | acriflavin resistance protein Shal_2319 2806140 - 2805061 - | RND family efflux transporter MFP subunit TERM 3032 2806286 - 2806271 - R 100 -10.4 -5.73978 | opp_overlap 2806271 ATCACAAACAAAAAA GGAGCC CTGA GGCTCC TTTTGCAATTAATAA TERM 3033 2806271 - 2806286 + r 89 -10.4 -4.20696 | opp_overlap 2806271 ATCACAAACAAAAAA GGAGCC CTGA GGCTCC TTTTGCAATTAATAA Shal_2320 2807419 - 2806322 - | NlpB/DapX family lipoprotein Shal_2321 2808307 - 2807423 - | dihydrodipicolinate synthase Shal_2322 2808547 - 2809083 + | amino acid-binding ACT domain-containing protein Shal_2323 2809093 - 2809575 + | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen TERM 3034 2809637 - 2809622 - T 91 -10.4 -4.64766 | opp_overlap 2809622 TTCACATTGTAAAAA GGAGCC CTAT GGCTCC TTTTTTTGTTATAGA TERM 3035 2809622 - 2809637 + T 100 -10.4 -5.88565 | opp_overlap 2809622 TTCACATTGTAAAAA GGAGCC CTAT GGCTCC TTTTTTTGTTATAGA Shal_2324 2810274 - 2809660 - | lysine exporter protein LysE/YggA Shal_2325 2810404 - 2811294 + | chromosome replication initiation inhibitor protein TERM 3036 2811312 - 2811340 + T 83 -9 -4.03234 | opp_overlap 2811313 2811319, overlap 2811313 2811319 AAAAATTCAGCCCAA ATAAAAAGGAGC ATTGA GCTCCTTTTTAC TTTATCTCGCCACAA TERM 3037 2811313 - 2811339 + T 84 -12.5 -3.01726 | opp_overlap 2811313 2811319, overlap 2811312 2811319 AAAATTCAGCCCAAA TAAAAAGGAGC ATTGA GCTCCTTTTTA CTTTATCTCGCCACA TERM 3038 2811339 - 2811313 - T 90 -12.5 -3.63266 | opp_overlap 2811312 2811313 2811319, overlap 2811319 AAAATTCAGCCCAAA TAAAAAGGAGC ATTGA GCTCCTTTTTA CTTTATCTCGCCACA TERM 3039 2811319 - 2811333 + T 86 -7.1 -5.07011 | opp_overlap 2811319 2811313, overlap 2811313 2811312 CAGCCCAAATAAAAA GGAGC ATTGA GCTCC TTTTTACTTTATCTC TERM 3040 2811333 - 2811319 - T 90 -7.1 -5.28942 | opp_overlap 2811313 2811312 2811319, overlap 2811313 CAGCCCAAATAAAAA GGAGC ATTGA GCTCC TTTTTACTTTATCTC Shal_2326 2812477 - 2811356 - | hypothetical protein Shal_2327 2812783 - 2812568 - | SirA family protein TERM 3041 2813383 - 2813358 - g 72 -5.5 -4.47328 | gap 1, opp_overlap 2813363, overlap 2813361 AAGCGCAGCAGAAAA CATCCCCAGCAA CCA TTGCTGGT-ATG TTAGGGGCAATTTTG TERM 3042 2813363 - 2813379 + G 75 -10.9 -3.06815 | opp_overlap 2813361 2813358 CAGCAGAAAACATCC CCAGCAA CCA TTGCTGG TATGTTAGGGGCAAT Shal_2328 2812895 - 2814352 + | peptidase M48 Ste24p TERM 3043 2814360 - 2814391 + F 90 -13.2 -2.85351 | opp_overlap 2814353 2814366 2814386 2814389 AGCTATAATACCCTC AGCTAATTTGTGAC TCTG GTCACAAATTAGCG TATCATATACACAAA TERM 3044 2814385 - 2814366 - f 72 -9.4 -3.06679 | opp_overlap 2814360, overlap 2814353 AATACCCTCAGCTAA TTTGTGAC TCTG GTCACAAA TTAGCGTATCATATA Shal_2329 2814429 - 2814779 + | arsenate reductase Shal_2330 2814792 - 2815160 + | hypothetical protein TERM 3045 2815237 - 2815227 - f 70 -2.6 -5.06451 | opp_overlap 2815227 TATTAGTCCAAAAAA TAAA CCG TTTA TTAAATAACCTATTC Shal_2331 2815403 - 2817340 + | hypothetical protein TERM 3046 2817368 - 2817397 + T 87 -12.3 -3.38671 | opp_overlap 2817373, overlap 2817373 TCGACTCTGAAAACG CAAAAGCCCAGAT GAAT ATCTGGGCTTTTA TCTTATATAATTATC TERM 3047 2817392 - 2817373 - T 95 -12.2 -4.4267 | opp_overlap 2817373 2817368 TCTGAAAACGCAAAA GCCCAGAT GAAT ATCTGGGC TTTTATCTTATATAA TERM 3048 2817373 - 2817392 + T 100 -12.2 -4.76963 | opp_overlap 2817373, overlap 2817368 TCTGAAAACGCAAAA GCCCAGAT GAAT ATCTGGGC TTTTATCTTATATAA Shal_2332 2818130 - 2817420 - | DNA replication initiation factor TERM 3049 2817583 - 2817611 + g 75 -2.9 -5.1356 | overlap 2817584 AACTGTAAGCCTCTC ATCGCCGCACGGC GTT GCAGTGCCGCAAG TTTTTCTTCATCAGC TERM 3050 2818165 - 2818192 + r 85 -11.4 -3.34522 | opp_overlap 2818158 2818156 2818154 2818167 2818169 2818171 2818173, overlap 2818188 GCAATATATCTATAT TAGACACACATG GTAG CATGTGTGTCAA TTGATTGGGAGCTAT TERM 3051 2818190 - 2818167 - R 91 -14 -2.66559 | opp_overlap 2818165 2818188, overlap 2818158 2818156 2818154 2818169 2818171 2818173 AATATATCTATATTA GACACACATG GTAG CATGTGTGTC AATTGATTGGGAGCT TERM 3052 2818188 - 2818169 - R 77 -10.8 -2.87026 | opp_overlap 2818165, overlap 2818156 2818154 2818167 2818171 2818173 TATATCTATATTAGA CACACATG GTAG CATGTGTG TCAATTGATTGGGAG Shal_2333 2819316 - 2818204 - | hypothetical protein TERM 3053 2818579 - 2818567 - G 71 -10.5 -2.61264 | opp_overlap 2818569, overlap 2818566 GGTGGCAGCGACAAT GGCCG CAA CGGCC TCATCGATCGTGGCG TERM 3054 2819123 - 2819137 + g 80 -5.7 -5.05782 | TCATTTAAGAGTGCA CTCTG AGTAC CAGAG TTTTTTAAAATAACT Shal_2334 2819493 - 2820749 + | uracil-xanthine permease TERM 3055 2820823 - 2820850 + T 100 -15.7 -4.72272 | opp_overlap 2820823 TATTGATATAAGAAA GCCCCTAACGA CTCACA TCGTTAGGGGC TTTTTACTGACACAA TERM 3056 2820850 - 2820823 - T 100 -16.4 -4.39998 | opp_overlap 2820823 TATTGATATAAGAAA GCCCCTAACGAC TCAC ATCGTTAGGGGC TTTTTACTGACACAA Shal_2335 2821213 - 2820872 - | glutaredoxin-like protein TERM 3057 2821144 - 2821125 - G 75 -2.8 -5.19328 | ACTTGAGAAGAAAAA CCACAGCT AGGT AACTTTGG CGAGCCCTTCATATA TERM 3058 2821295 - 2821281 - H 73 -2.1 -5.22006 | GTAGCAGAACAAAAA CCTAC TTTTT ATAGG GATAATATCTAATAG TERM 3059 2821336 - 2821314 - H 71 -6.4 -4.23281 | opp_overlap 2821298 2821314 2821314 2821317, overlap 2821317 AATATCTAATAGAAA TTATCGATTA AGA TAATCGATCA ATTTGAATAAACAAT Shal_2336 2821439 - 2822023 + | superoxide dismutase TERM 3060 2822049 - 2822064 + F 100 -10.4 -5.57396 | TTCGGTACATCGAGA GGAGCC TTTA GGCTCC TTTTTTATTGCTTAT Shal_2337 2822253 - 2824187 + | putative serine protein kinase, PrkA TERM 3061 2824195 - 2824216 + F 75 -10.1 -3.05844 | opp_overlap 2824191, overlap 2824198 CTTCTTAGAAAGCCC TGAGGGGAG TTTA CTCCCCTCC TATTAGGCTAGGAGG TERM 3062 2824198 - 2824213 + F 73 -10.4 -2.75074 | opp_overlap 2824191, overlap 2824195 CTTAGAAAGCCCTGA GGGGAG TTTA CTCCCC TCCTATTAGGCTAGG TERM 3063 2824898 - 2824925 + G 82 -8 -4.5852 | gap 1, opp_overlap 2824897 AAGACTTAAAAGATC GTATCAA-AAAAG TAC CTTTTATTGATAC TTTTGATTTACGTTA Shal_2338 2824237 - 2825505 + | hypothetical protein TERM 3064 2825859 - 2825835 - g 72 -5 -4.67982 | TCTCATGGAAGAAAA TACCATCACT ATGCA AGCGCTGGTA ATGGCTCATGCAAGC TERM 3065 2826209 - 2826190 - g 80 -7.2 -4.61824 | CAAGAAGAAGCAAAA GAAAAGCA AGCC TGCTTTCC TGCTGAGCCACAAGA Shal_2339 2825515 - 2827038 + | hypothetical protein TERM 3066 2827089 - 2827050 - T 81 -11.6 -2.92246 | opp_overlap 2827062, overlap 2827054 2827062 CTAAGCCGAATTACA GATATAAAAAAAGCGCCT AATT AGGCGCTTTTATCAAATC AACTTAAAATTTAAG TERM 3067 2827085 - 2827054 - T 78 -11 -3.05647 | opp_overlap 2827062, overlap 2827050 2827062 GCCGAATTACAGATA TAAAAAAAGCGCCT AATT AGGCGCTTTTATCA AATCAACTTAAAATT TERM 3068 2827077 - 2827062 - T 100 -10.4 -5.77988 | opp_overlap 2827062, overlap 2827054 2827050 ACAGATATAAAAAAA GCGCCT AATT AGGCGC TTTTATCAAATCAAC TERM 3069 2827062 - 2827077 + T 90 -10.4 -4.4009 | opp_overlap 2827054 2827050 2827062 ACAGATATAAAAAAA GCGCCT AATT AGGCGC TTTTATCAAATCAAC Shal_2340 2827387 - 2827100 - | ribosomal protein L25 Shal_2341 2828088 - 2827540 - | hypothetical protein Shal_2342 2829579 - 2828185 - | peptidoglycan binding domain-containing protein TERM 3070 2829705 - 2829687 - R 93 -9.6 -4.75518 | opp_overlap 2829687 2829696 GATAGAAAATTAAAA GCTCCTTC AGC AAAGGAGC TTGGCTTTATCTACA TERM 3071 2829687 - 2829705 + r 72 -8.9 -3.35695 | opp_overlap 2829687, overlap 2829696 GATAGAAAATTAAAA GCTCCTT CAGCA AAGGAGC TTGGCTTTATCTACA Shal_2343 2830310 - 2829735 - | methylation site containing protein TERM 3072 2830617 - 2830602 - R 91 -6.1 -5.42259 | opp_overlap 2830602 TCAGGCGTAAAAAAA CCAGC TCGATG GCTGG TTTAGTCACTCTTCA TERM 3073 2830766 - 2830751 - R 95 -6.1 -5.58209 | opp_overlap 2830751 TTAAATGTAAAAAAA CCAGC TCAATG GCTGG TTTAGTCACTCTTCA TERM 3074 2830830 - 2830850 + r 73 -10.5 -2.89742 | overlap 2830833 GGCACGCTTATTCAG CGAGGGATT TTA AATCCCTTG TGTCTACCGATTCCA TERM 3075 2830833 - 2830847 + r 72 -8.6 -3.5947 | overlap 2830830 ACGCTTATTCAGCGA GGGATT TTA AATCCC TTGTGTCTACCGATT TERM 3076 2831433 - 2831415 - R 100 -12.4 -5.38047 | opp_overlap 2831415 GACGGATACAAAAAA GCCCCGAC ATT GTCGAGGC TTCTCTGCAATTCTC TERM 3077 2831415 - 2831433 + r 79 -10.2 -3.52906 | opp_overlap 2831415 GACGGATACAAAAAA GCCCCGAC ATT GTCGAGGC TTCTCTGCAATTCTC TERM 3078 2831587 - 2831610 + r 73 -8.1 -3.80573 | opp_overlap 2831588, overlap 2831588 CGCATGATACAAAAA ACCTCCGCA CGTTAA TGCGGAGGC TTTAATGATGGTACC TERM 3079 2831609 - 2831588 - R 100 -12.3 -5.39721 | opp_overlap 2831588 2831587 GCATGATACAAAAAA CCTCCGCAC GTTA ATGCGGAGG CTTTAATGATGGTAC TERM 3080 2831588 - 2831609 + r 80 -11.6 -2.88023 | opp_overlap 2831588, overlap 2831587 GCATGATACAAAAAA CCTCCGCA CGTTAA TGCGGAGG CTTTAATGATGGTAC TERM 3081 2831722 - 2831745 + r 73 -8.1 -3.80573 | opp_overlap 2831723, overlap 2831723 GCAAGATACAAAAAA ACCTCCGCA CGTTAA TGCGGAGGC TTTAATGATGGTACC TERM 3082 2831744 - 2831723 - R 100 -12.3 -5.80248 | opp_overlap 2831723 2831722 CAAGATACAAAAAAA CCTCCGCAC GTTA ATGCGGAGG CTTTAATGATGGTAC TERM 3083 2831723 - 2831744 + r 80 -11.6 -2.88023 | opp_overlap 2831723, overlap 2831722 CAAGATACAAAAAAA CCTCCGCA CGTTAA TGCGGAGG CTTTAATGATGGTAC TERM 3084 2831794 - 2831814 + r 73 -10.5 -2.89742 | overlap 2831797 GGCACGCTTATTCAG CGAGGGATT TTA AATCCCTTG TGTCTACCGATTCCA TERM 3085 2831797 - 2831811 + r 72 -8.6 -3.5947 | overlap 2831794 ACGCTTATTCAGCGA GGGATT TTA AATCCC TTGTGTCTACCGATT Shal_2344 2832785 - 2832237 - | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase TERM 3086 2832750 - 2832731 - G 77 -3.6 -5.25772 | gap 1 AAAGTACAACAAAAA CAGG-TAAC AGA GCTAACCTG AAAAGTGTTAACGCA Shal_2345 2834662 - 2832833 - | excinuclease ABC subunit C Shal_2346 2835324 - 2834680 - | response regulator TERM 3087 2835501 - 2835528 + H 85 -12.8 -3.25823 | opp_overlap 2835506, overlap 2835506 CTTAACGAAGAAAGC AAAAAGGCAGCC AATA GGCTGCCTTTTC TTAATATGGCGGAGA TERM 3088 2835523 - 2835506 - H 100 -12.7 -5.09521 | opp_overlap 2835506 2835501 CGAAGAAAGCAAAAA GGCAGCC AATA GGCTGCC TTTTCTTAATATGGC TERM 3089 2835506 - 2835523 + H 100 -12.7 -4.75472 | opp_overlap 2835506, overlap 2835501 CGAAGAAAGCAAAAA GGCAGCC AATA GGCTGCC TTTTCTTAATATGGC Shal_2347 2835853 - 2837565 + | ATP-dependent protease Shal_2348 2837633 - 2838148 + | 3-hydroxydecanoyl-(acyl carrier protein) dehydratase TERM 3090 2838183 - 2838160 - T 95 -11.8 -4.29227 | TTAATCACGAATAAA GTGGCTAGTA TTTG CACTAGCCAC TGCATAAAAATGCCC TERM 3091 2838216 - 2838194 - T 90 -9.2 -4.85599 | GCCACTGCATAAAAA TGCCCTCT TTATCCT AGAGGGCA AAAAAGTTTCTCAAT Shal_2349 2838453 - 2838277 - | ribosome modulation factor TERM 3092 2838494 - 2838481 - R 84 -6.7 -4.84311 | overlap 2838484 TCTGAGATAACAAAA GAAGC TAAC GCTTC AGCACCATAAATAAT TERM 3093 2838603 - 2838621 + r 86 -10.3 -4.05446 | opp_overlap 2838603 TTTAGACAAAAAAAA TCGAGGC ACTTG GCCTCGA TTTCTACTTCAAAGA TERM 3094 2838621 - 2838603 - R 100 -10.3 -6.02914 | opp_overlap 2838603 TTTAGACAAAAAAAA TCGAGGC ACTTG GCCTCGA TTTCTACTTCAAAGA Shal_2350 2840525 - 2838651 - | hypothetical protein Shal_2351 2842489 - 2840555 - | ABC transporter ATPase component Shal_2352 2842652 - 2842491 - | glutaredoxin 2 TERM 3095 2842695 - 2842675 - R 70 -9.8 -2.52896 | opp_overlap 2842675 2842677 2842679, overlap 2842640 2842679 TCAGCTGCTAATTCA CACAGATG GCACG CATCTGTG TGATATAAAATAACC TERM 3096 2842675 - 2842695 + r 70 -9.8 -2.63596 | opp_overlap 2842640 2842675 2842679, overlap 2842677 2842679 TCAGCTGCTAATTCA CACAGATG GCACG CATCTGTG TGATATAAAATAACC Shal_2353 2844852 - 2842717 - | 23S rRNA m(2)G2445 methyltransferase Shal_2354 2845558 - 2846157 + | peptidyl-prolyl cis-trans isomerase cyclophilin type Shal_2355 2847031 - 2846498 - | hypothetical protein TERM 3097 2846760 - 2846741 - G 73 -2.1 -5.24989 | opp_overlap 2846741 TGACACATTAAAAAA CCAAGAT TTAGGC ATCTGGG GTTTTAGTAAGAAAT TERM 3098 2847167 - 2847133 - R 95 -6.5 -5.65927 | opp_overlap 2847134 2847154 TATCTAAATAAAAAA CGATCACCAAGATCC TTTTG AGATCTGAATGATCG TTTTATGATCTAATA Shal_2356 2848224 - 2847205 - | dihydroorotate dehydrogenase 2 TERM 3099 2848266 - 2848247 - R 100 -12.8 -5.1287 | opp_overlap 2848247 2848241 CCTAGACCGAAAAAA GCCCCGGC ACTT GCCAGGGC TTCTGATTTAAATCA TERM 3100 2848247 - 2848266 + r 82 -10.6 -3.61609 | opp_overlap 2848247, overlap 2848241 CCTAGACCGAAAAAA GCCCCGGC ACTT GCCAGGGC TTCTGATTTAAATCA Shal_2357 2853128 - 2848284 - | NAD-glutamate dehydrogenase TERM 3101 2853378 - 2853361 - R 100 -9.1 -5.64274 | opp_overlap 2853361 TTATGCATAAAAAAA GAGGAGC TAAT GCTCCCC TTTAGTCGACTCTAC Shal_2358 2855693 - 2853390 - | hypothetical protein TERM 3102 2855021 - 2855006 - G 72 -6.2 -4.19587 | CTATCAAGAAAAACA GCAAAA CTCC TTTTGC ACCGTCGGCAACATC Shal_2359 2856722 - 2855706 - | BNR repeat-containing protein TERM 3103 2856765 - 2856740 - R 86 -9.7 -4.0896 | overlap 2856742 2856744 AAACTTCCTTTAAAA TAGAGAGGGGC ATGA GCCCCTCTACA AGCTGGGTTAACGAA TERM 3104 2856763 - 2856742 - R 80 -10.1 -3.63922 | overlap 2856740 2856744 ACTTCCTTTAAAATA GAGAGGGGC ATGA GCCCCTCTA CAAGCTGGGTTAACG TERM 3105 2856761 - 2856744 - R 87 -12.7 -3.39908 | overlap 2856742 2856740 TTCCTTTAAAATAGA GAGGGGC ATGA GCCCCTC TACAAGCTGGGTTAA Shal_2360 2858137 - 2856773 - | hypothetical protein TERM 3106 2857848 - 2857870 + g 74 -7.1 -4.21319 | overlap 2857846 TTAATTTGACCATCA GATAGGTAC TGTTT GTACTTATC TTTATTGGCATTGGT Shal_2361 2860204 - 2858156 - | hypothetical protein Shal_2362 2860719 - 2860522 - | hypothetical protein TERM 3107 2860823 - 2860776 - R 78 -10.8 -2.93623 | gap 1, opp_overlap 2860774, overlap 2860773 2860771 TCTCGTAAAATAGTA GGACCTCAAT-TCAGTAGCCGTA TCA TACGATGACTGAGATTGAGATCC AATATATCACTGCTG Shal_2363 2863405 - 2860844 - | aminopeptidase N TERM 3108 2860939 - 2860951 + g 81 -4.9 -5.16572 | TCATCAATAATTGCC TTTGA CTA TCAAA TTTTTTGAATTGAAT TERM 3109 2863437 - 2863467 + r 82 -11.3 -3.24059 | opp_overlap 2863424 2863445, overlap 2863445 TATTAATTTTGAATT AAAAAAAACGCGC ATAAA GCGCGTTTTTTTA TTGAGTCTGTTTTAC TERM 3110 2863459 - 2863445 - R 100 -8.5 -5.95166 | opp_overlap 2863445 2863437 TTGAATTAAAAAAAA CGCGC ATAAA GCGCG TTTTTTTATTGAGTC TERM 3111 2863445 - 2863459 + r 100 -8.5 -5.8187 | opp_overlap 2863445, overlap 2863437 TTGAATTAAAAAAAA CGCGC ATAAA GCGCG TTTTTTTATTGAGTC Shal_2364 2865524 - 2863479 - | carboxy-terminal protease Shal_2365 2866196 - 2865558 - | putative solute/DNA competence effector TERM 3112 2865661 - 2865647 - G 70 -10 -3.09004 | opp_overlap 2865647 2865646 2865649 2865658, overlap 2865644 2865649 TGATGTCCAAAATCA CACCAG CGA CTGGTG ATTTACCTAATTTGA Shal_2366 2866940 - 2866482 - | putative GAF sensor protein Shal_2367 2867315 - 2867025 - | YebG family protein Shal_2368 2867503 - 2868132 + | paraquat-inducible protein A TERM 3113 2868564 - 2868578 + G 81 -8.6 -4.5464 | opp_overlap 2868555, overlap 2868557 2868555 AATGGATAGGCCGCT GGTCTA TGT TAGACC TTTTCGTTATCTCTC Shal_2369 2868122 - 2868763 + | paraquat-inducible protein A TERM 3114 2870238 - 2870248 + G 87 -6.8 -5.1101 | TTCGCCAGTGCCAAG GACG CGA CGTC TTTTTTCAATAATCA Shal_2370 2868741 - 2871371 + | hypothetical protein TERM 3115 2871396 - 2871412 + T 100 -9.4 -5.95539 | opp_overlap 2871396 AAAGCAATTTAAAAA CGAGGC ATTAA GCCTCG TTTTTTTATTTAAGC TERM 3116 2871412 - 2871396 - T 93 -9.4 -4.788 | opp_overlap 2871396 AAAGCAATTTAAAAA CGAGGC ATTAA GCCTCG TTTTTTTATTTAAGC Shal_2371 2872694 - 2871468 - | nucleoside recognition domain-containing protein TERM 3117 2871878 - 2871888 + g 72 -8.2 -3.745 | TAAGCTTAATTGATT GGGC GAA GCCC TCTTTTGCTCCCTCA TERM 3118 2874089 - 2874077 - g 71 -7.7 -3.99805 | opp_overlap 2874077 GTGGAAAAAGTTAAA CCTCA AGG TGAGG TCATTGTCAGTTATG Shal_2372 2872763 - 2874202 + | rRNA (cytosine-C(5)-)-methyltransferase RsmF TERM 3119 2874418 - 2874447 + T 100 -10.1 -5.50499 | TGAGCCATTCCCCTA GACCCAGAACAAT TGGA ATAGTTTTGGGTC TTTTTTTGCCTGTAA Shal_2373 2875291 - 2874503 - | TatD family hydrolase Shal_2374 2875663 - 2875337 - | type IV pilus biogenesis protein PilZ Shal_2375 2876587 - 2875673 - | DNA polymerase III, delta prime subunit Shal_2376 2877227 - 2876589 - | dTMP kinase Shal_2377 2878231 - 2877224 - | aminodeoxychorismate lyase TERM 3120 2877764 - 2877749 - G 89 -9 -4.58663 | AGTATCCGGGAAAAA CTTGCC CTCA GGCAAG CCCGAGTCATCACCA Shal_2378 2879169 - 2878228 - | aminodeoxychorismate lyase TERM 3121 2879130 - 2879105 - G 77 -10.5 -3.46138 | opp_overlap 2879104 2879105 AAACCATCACCATAA GCTAATCCCCT ATCA AGGGGACTAAC ATTCATGTCGGGCTG Shal_2379 2879880 - 2879242 - | uridine kinase Shal_2380 2881007 - 2879892 - | ATP-binding Mrp/Nbp35 family protein TERM 3122 2880091 - 2880103 + g 74 -3.3 -5.01732 | opp_overlap 2880080 AATAGCGGCACATTG TAGCG CGT CGCCA TTTTTTGACCGCCTT Shal_2381 2881168 - 2883207 + | methionyl-tRNA synthetase TERM 3123 2883258 - 2883301 + T 81 -11.3 -3.08679 | gap 1, opp_overlap 2883269, overlap 2883269 TCGCTAAAATATAAA GACAGTAAAAA-GCCGCTTA CTTGA TAAGCGGCTTTTTTATTGGC TGTTCAGTACAAAGA TERM 3124 2883289 - 2883269 - T 100 -11.9 -4.90217 | opp_overlap 2883258 2883269 TAAAGACAGTAAAAA GCCGCTTAC TTG ATAAGCGGC TTTTTTATTGGCTGT TERM 3125 2883269 - 2883289 + T 100 -11.2 -5.49234 | opp_overlap 2883269, overlap 2883258 TAAAGACAGTAAAAA GCCGCTTA CTTGA TAAGCGGC TTTTTTATTGGCTGT Shal_2382 2884143 - 2883391 - | hypothetical protein TERM 3126 2884606 - 2884594 - g 71 -3.3 -4.89393 | overlap 2884595 TAAAGCCGAGAAAAA GGCTG TTG CAGCT AAATCGACGGCTAAG TERM 3127 2884653 - 2884640 - g 85 -3.8 -5.52384 | GTGCCAGCAAAAAAA GCAG CTAAGC CTGC AGCCAAAAACGGTGG Shal_2383 2884391 - 2884735 + | hypothetical protein TERM 3128 2884784 - 2884834 + F 80 -11.5 -2.78384 | gap 1, opp_overlap 2884797, overlap 2884785 2884797 CCATTTGCCAACTTC GA-TTAATAAAAAACTCCGTCACC CTAG GGTAGCGGAGTTTTTTATTACCTC TCTCATACCCCAGCC TERM 3129 2884785 - 2884832 + F 78 -10.8 -2.94099 | opp_overlap 2884797, overlap 2884784 2884797 CATTTGCCAACTTCG ATTAATAAAAAACTCCGTCACC CTAG GGTAGCGGAGTTTTTTATTACC TCTCTCATACCCCAG TERM 3130 2884797 - 2884820 + F 95 -8.8 -5.49234 | opp_overlap 2884797, overlap 2884785 2884784 TCGATTAATAAAAAA CTCCGTCACC CTAG GGTAGCGGAG TTTTTTATTACCTCT TERM 3131 2884820 - 2884797 - f 95 -8.8 -5.5112 | opp_overlap 2884785 2884784 2884797 TCGATTAATAAAAAA CTCCGTCACC CTAG GGTAGCGGAG TTTTTTATTACCTCT Shal_2384 2884960 - 2885298 + | hypothetical protein TERM 3132 2886363 - 2886375 + G 84 -7.7 -4.90302 | AATCTTTTTTATATT GGCAT CCT ATGCC TTTATTTTATTACTG Shal_2386 2885824 - 2887056 + | Bcr/CflA subfamily drug resistance transporter Shal_2387 2887357 - 2889078 + | acetolactate synthase, large subunit, biosynthetic type Shal_2388 2889078 - 2889572 + | acetolactate synthase, small subunit TERM 3133 2889616 - 2889589 - T 83 -12.8 -2.63631 | opp_overlap 2889594, overlap 2889594 CGAAGCCTGATATGA CAAAAGGGAGCC AATC GGCTCCCTTTTT AAATTCACTTCTTGA TERM 3134 2889611 - 2889594 - T 100 -12.7 -4.50976 | opp_overlap 2889594, overlap 2889589 CCTGATATGACAAAA GGGAGCC AATC GGCTCCC TTTTTAAATTCACTT TERM 3135 2889594 - 2889611 + T 100 -12.7 -4.75776 | opp_overlap 2889594 2889589 CCTGATATGACAAAA GGGAGCC AATC GGCTCCC TTTTTAAATTCACTT Shal_2389 2890098 - 2889658 - | heat shock protein Hsp20 TERM 3136 2890357 - 2890384 + r 100 -17.2 -4.11216 | opp_overlap 2890357 TTGAGCCAAAAAAAA TCCAGTACTTGC AAAA GCAAGTACTGGA TTTTAAAAATACAAC TERM 3137 2890384 - 2890357 - R 100 -17.2 -5.81412 | opp_overlap 2890357 TTGAGCCAAAAAAAA TCCAGTACTTGC AAAA GCAAGTACTGGA TTTTAAAAATACAAC Shal_2390 2892248 - 2890467 - | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 3138 2891213 - 2891235 + g 79 -4.2 -5.093 | opp_overlap 2891213 CAATCTCTTCAGTAA TGAAAACAAG TTC TTCGTTTTCA TTTTCTTCTTTTAAG Shal_2391 2893302 - 2892622 - | carboxylesterase TERM 3139 2894205 - 2894227 + G 78 -12.8 -2.70932 | TGACGCTCTTTTTGA TGCGCTTGAT AAA ATCGAGCGCA TCCTTGAAGACAAGC Shal_2392 2893537 - 2894535 + | glutathione S-transferase domain-containing protein Shal_2393 2894774 - 2894556 - | hypothetical protein TERM 3140 2894762 - 2894748 - G 80 -7.2 -4.57581 | AGGGGAAACAATAAA TTTTCC AGC GGAAAA ATGGATGATCATAAG TERM 3141 2894822 - 2894843 + r 72 -8.7 -3.5241 | opp_overlap 2894824, overlap 2894820 2894824 ACAAAGACAATAAAA AAGCCCAAC TTAG GTTGGGCTC TATTTCTACAGGCTA TERM 3142 2894841 - 2894824 - R 100 -11.3 -5.66338 | opp_overlap 2894822 2894820 2894824 AAAGACAATAAAAAA GCCCAAC TTAG GTTGGGC TCTATTTCTACAGGC TERM 3143 2894824 - 2894841 + r 85 -11.3 -3.3353 | opp_overlap 2894824, overlap 2894822 2894820 AAAGACAATAAAAAA GCCCAAC TTAG GTTGGGC TCTATTTCTACAGGC TERM 3144 2894871 - 2894883 + r 76 -9.1 -3.64103 | CTACACCAGCTTAAT GGTGG TGA CCACC TTTACCATGTGCATG Shal_2394 2895348 - 2894866 - | peptidylprolyl isomerase FKBP-type Shal_2395 2896717 - 2895527 - | lytic murein transglycosylase TERM 3145 2895905 - 2895880 - G 77 -6.8 -4.44046 | gap 1, opp_overlap 2895901 2895904, overlap 2895882 CTGATGGCAAATAAA GCGC-CGCCTG CATCT CAGGCGTGCTC AGTGGTGAGCCATTG TERM 3146 2896944 - 2896928 - H 73 -8 -3.93383 | CGAATACATAGCAAA TGCTCG AATTG CGAGCA AAAATCGCGGATATA Shal_2396 2897086 - 2897445 + | hypothetical protein TERM 3147 2897485 - 2897517 + F 100 -15.1 -4.91109 | opp_overlap 2897489, overlap 2897489 AAGTCACTTTTATAT CAAAGCGCACAAT CTAATCC ATTGTGCGCTTTG TTTTTATCATGCAAG TERM 3148 2897489 - 2897513 + F 93 -10.1 -4.98911 | opp_overlap 2897489, overlap 2897485 CACTTTTATATCAAA GCGCACAAT CTAATCC ATTGTGCGC TTTGTTTTTATCATG TERM 3149 2897513 - 2897489 - f 84 -10.1 -3.83502 | opp_overlap 2897489 2897485 CACTTTTATATCAAA GCGCACAAT CTAATCC ATTGTGCGC TTTGTTTTTATCATG Shal_2397 2897526 - 2898188 + | hypothetical protein TERM 3150 2898174 - 2898201 + T 70 -7.8 -3.75153 | gap 1, opp_overlap 2898174 AGCGACTTAAGAGAA GAGCACTCGGA TTAAGTT TCCG-GTGCTC TTTACGTTAACAGAA TERM 3151 2898201 - 2898174 - T 70 -7.8 -3.69256 | gap 1, opp_overlap 2898174 AGCGACTTAAGAGAA GAGCACTCGGA TTAAGTT TCCG-GTGCTC TTTACGTTAACAGAA Shal_2398 2899162 - 2898218 - | response regulator receiver modulated CheW protein Shal_2399 2900904 - 2899303 - | MscS mechanosensitive ion channel Shal_2400 2901420 - 2901593 + | hypothetical protein Shal_2401 2902800 - 2901865 - | hypothetical protein Shal_2402 2903112 - 2903519 + | hypothetical protein TERM 3152 2903547 - 2903534 - T 74 -5.3 -4.7254 | ATGTTCGAGTAAAAA TGCTT TTAT AAGCA CCTCACATAACTTTT Shal_2403 2904313 - 2903516 - | alpha/beta hydrolase fold TERM 3153 2903611 - 2903636 + g 73 -7.7 -4.1899 | gap 1, opp_overlap 2903611 2903604 GGTCAAATTCAATAA GCTTGCTCTGAT AAT ATT-GAGCAAGC TTTTGACTGCAATCA Shal_2404 2905155 - 2904361 - | ABC transporter TERM 3154 2905454 - 2905444 - g 82 -5.4 -5.243 | CAAATGATGAAAAAA GTGA TGG TCAC ACTCATAGGGGGAAG TERM 3155 2905597 - 2905587 - g 70 -2.4 -5.00616 | opp_overlap 2905587 2905594, overlap 2905590 2905594 GTGTTGGCTAAAAAA GAGC CAA GCGC ATTTAAGTCAAACTG Shal_2405 2905432 - 2905656 + | integral membrane protein TerC Shal_2406 2905919 - 2906911 + | cytochrome-c peroxidase TERM 3156 2906947 - 2906965 + T 86 -8.1 -4.99134 | opp_overlap 2906947 GGGTTTATTGCCAAA GAGCCGT AGTCA GCGGCTC TTTTTGATTTCAGGT Shal_2407 2907384 - 2907025 - | hypothetical protein Shal_2408 2908714 - 2907800 - | LysR family transcriptional regulator TERM 3157 2907958 - 2907947 - G 72 -5.8 -4.4648 | ATTGCCACCACAAAA GTCG ACTT CGAC AAGCTCACCACAGCT TERM 3158 2909124 - 2909110 - g 74 -7 -4.29106 | CTCGACACCAAGAAA GCCGAC TGT GGCGGC AACTTCTTTAATAGC TERM 3159 2909322 - 2909302 - g 83 -6.1 -5.00616 | CTCGCTGTTAAAAAA TGGGACTAC TTA GTGATCCCA CGCGGCACGACTTAT Shal_2409 2908870 - 2910030 + | homogentisate 12-dioxygenase Shal_2410 2910135 - 2911175 + | 4-hydroxyphenylpyruvate dioxygenase TERM 3160 2911289 - 2911342 + T 100 -16.4 -3.05046 | gap 2, opp_overlap 2911297, overlap 2911290 AATACGCAGAGAGTA CGCATAAAGGCAACAGTTCAAGCCGT TTAA ACG-CTTGAACTGGTGCCTTTA-GTG CTTTTAGAAAGCTGA TERM 3161 2911290 - 2911343 + T 100 -18.6 -4.08767 | opp_overlap 2911297, overlap 2911289 2911342 ATACGCAGAGAGTAC GCA-TAAAGGCAACAGTTCAAGCCGT TTAA ACG-CTTGAACTGGTGCCTTTAGTGC TTTTAGAAAGCTGAA TERM 3162 2911335 - 2911297 - T 100 -15.5 -3.94409 | gap 1, opp_overlap 2911289 2911290 GAGAGTACGCATAAA GGCAACAGTTCAAGCCGT TTAA ACG-CTTGAACTGGTGCC TTTAGTGCTTTTAGA Shal_2411 2912449 - 2911502 - | diguanylate cyclase with PAS/PAC sensor Shal_2412 2912676 - 2912539 - | hypothetical protein Shal_2413 2912912 - 2913022 + | transposase Shal_2414 2914211 - 2913231 - | hypothetical protein Shal_2415 2914272 - 2914793 + | 4-hydroxyphenylpyruvate dioxygenase TERM 3163 2915357 - 2915346 - f 72 -4.4 -4.76075 | AGGACACGAAGAAAA GCTA CAGT TAGC AGTAAGCTCAGATGT TERM 3164 2915409 - 2915419 + F 73 -8.2 -3.84246 | opp_overlap 2915397 TAAGGCCATCCTTGG CCGC TCT GCGG TTTCATCCTTGAAAC Shal_2416 2915884 - 2916417 + | hypothetical protein TERM 3165 2917224 - 2917193 - f 79 -6.6 -4.54449 | opp_overlap 2917194, overlap 2917194 2917198 2917223 ACAGCTCAGAGAAAA TGTAATCAGCCTTC ATTC GAAGGCTAACCACC TTTGGGGCAAAAGCT TERM 3166 2917223 - 2917194 - f 77 -10.1 -3.31946 | opp_overlap 2917194, overlap 2917193 2917198 CAGCTCAGAGAAAAT GTAATCAGCCTTC ATTC GAAGGCTAACCAC CTTTGGGGCAAAAGC TERM 3167 2917219 - 2917198 - f 75 -9.5 -3.43774 | opp_overlap 2917194, overlap 2917194 2917193 TCAGAGAAAATGTAA TCAGCCTTC ATTC GAAGGCTAA CCACCTTTGGGGCAA TERM 3168 2917698 - 2917712 + F 73 -2.1 -5.27476 | gap 1, opp_overlap 2917696, overlap 2917696 2917694 CCTTTAGGGCAAAGC CT-GCC GTCA GGCTAG TTTTCTTTTCTTACC TERM 3169 2918239 - 2918257 + G 80 -12.4 -3.05268 | GTCGAACGTGACGTG GCGCCGCA GCT TGTGGCGC TGTTAAGCATCATTC Shal_2417 2917801 - 2918421 + | lysine exporter protein LysE/YggA Shal_2418 2918477 - 2918854 + | hypothetical protein TERM 3170 2918867 - 2918897 + F 88 -11.3 -3.60865 | opp_overlap 2918872, overlap 2918872 TAAATTATCTCTGCC AAAAATGCCAAGC TCAAT GCTTGGCATTTTC TTATCCTTTCACCTA TERM 3171 2918872 - 2918892 + F 95 -11.2 -4.86902 | opp_overlap 2918872, overlap 2918867 TATCTCTGCCAAAAA TGCCAAGC TCAAT GCTTGGCA TTTTCTTATCCTTTC TERM 3172 2918892 - 2918872 - f 93 -11.2 -4.57073 | opp_overlap 2918867 2918872 TATCTCTGCCAAAAA TGCCAAGC TCAAT GCTTGGCA TTTTCTTATCCTTTC TERM 3173 2918982 - 2918970 - f 79 -5.5 -4.90266 | opp_overlap 2918970, overlap 2918979 CCCATCAAGTAAAAA GAGGA ACA TCCCC TGTCATATGACAGAG Shal_2419 2919092 - 2919421 + | hypothetical protein Shal_2420 2919753 - 2921540 + | gamma-glutamyltransferase TERM 3174 2921603 - 2921632 + F 100 -16.5 -5.07652 | opp_overlap 2921600 2921599 CTCTTTTATAAGCCC TCGCCCTTAGGAG TTTC CCCCTAAGGGCGA TTTTGTTTTCAGCCC Shal_2421 2921903 - 2922871 + | ribonucleoside hydrolase 1 TERM 3175 2922997 - 2923029 + T 70 -8.4 -3.3482 | overlap 2922993 2922998 2923000 GCTAACTATTTCAGC TCAGGGCTAAGCCG CTCAA CTGTTTAGCCCTGC TTCATTCCAGCATTA TERM 3176 2922998 - 2923028 + T 81 -11.9 -2.60571 | overlap 2922993 2922997 2923000 CTAACTATTTCAGCT CAGGGCTAAGCCG CTCAA CTGTTTAGCCCTG CTTCATTCCAGCATT Shal_2422 2924374 - 2923193 - | major facilitator transporter Shal_2423 2924994 - 2924773 - | hypothetical protein Shal_2424 2926189 - 2927214 + | putative simple sugar transport system substrate-binding protein Shal_2425 2927214 - 2927981 + | ABC transporter related TERM 3177 2928125 - 2928135 + G 77 -6.8 -4.55128 | ACCATCCCCTTTACT GCCA TTC TGGC TTTTGGTTTGACCCT Shal_2426 2927978 - 2928967 + | monosaccharide-transporting ATPase Shal_2427 2929117 - 2930478 + | glycoside hydrolase family protein TERM 3178 2930623 - 2930604 - T 100 -10.8 -5.60993 | opp_overlap 2930604 TGCCCCATAAAAAAA CGCAGTTT AACT AAACTGCG TTTCTCGTTTATCCA TERM 3179 2930604 - 2930623 + T 90 -10.8 -4.17701 | opp_overlap 2930604 TGCCCCATAAAAAAA CGCAGTTT AACT AAACTGCG TTTCTCGTTTATCCA Shal_2428 2932227 - 2930653 - | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor TERM 3180 2932399 - 2932439 + r 82 -12 -2.94199 | gap 1, opp_overlap 2932399 2932401, overlap 2932395 2932401 2932403 CACTTTACTCACACA CACGGTCATGATCCGGGGT TTAA ACTCCTG-TCATGACTGTG TATCGTTACTGGCTC Shal_2429 2933959 - 2932445 - | hypothetical protein TERM 3181 2934136 - 2934115 - H 73 -9.5 -3.25356 | opp_overlap 2934115, overlap 2934107 2934125 ATCTAAAGTGATTAA CGTTAACGC ACTT GCATTAACG TGAATTAACACAAGC Shal_2430 2934170 - 2936359 + | peptidyl-dipeptidase Dcp TERM 3182 2936435 - 2936398 - T 88 -8.5 -4.67038 | opp_overlap 2936399 2936405, overlap 2936399 2936405 TTGTTAAAATGAAAA CTCAAAAGGCGCCTATT AGTT AGTAGGCGCCTTTTTAT CATTTGAGTTTAGCT TERM 3183 2936399 - 2936434 + T 95 -14.2 -3.00017 | opp_overlap 2936399 2936398 2936405, overlap 2936405 TGTTAAAATGAAAAC TCAAAAGGCGCCTATT AGTT AGTAGGCGCCTTTTTA TCATTTGAGTTTAGC TERM 3184 2936434 - 2936399 - T 86 -12 -3.395 | opp_overlap 2936399 2936405, overlap 2936398 2936405 TGTTAAAATGAAAAC TCAAAAGGCGCCTATT AGTT AGTAGGCGCCTTTTTA TCATTTGAGTTTAGC TERM 3185 2936405 - 2936428 + T 100 -13.2 -5.04325 | opp_overlap 2936405 2936399 2936398, overlap 2936399 AATGAAAACTCAAAA GGCGCCTATT AGTT AGTAGGCGCC TTTTTATCATTTGAG TERM 3186 2936428 - 2936405 - T 91 -11 -4.4518 | opp_overlap 2936399 2936405, overlap 2936399 2936398 AATGAAAACTCAAAA GGCGCCTATT AGTT AGTAGGCGCC TTTTTATCATTTGAG TERM 3187 2936482 - 2936470 - T 77 -7.7 -4.20367 | TGCTGGAATAAATAA CTGGT ATA ACCAG CGCGCACCATAAAAC Shal_2431 2937074 - 2936796 - | hypothetical protein Shal_2432 2937373 - 2937984 + | hypothetical protein Shal_2433 2938667 - 2937981 - | nucleotidase TERM 3188 2938152 - 2938163 + g 76 -4.4 -5.0538 | opp_overlap 2938127 GTTATCACCCACCAT GAGT ATCG ACTC TTTTTTGGGGTGGCC TERM 3189 2938809 - 2938845 + r 77 -9.5 -3.55444 | opp_overlap 2938811, overlap 2938810 GTTAGGCCTAAAGAC AACCCCCCTCTATTA GCATAAG TAATAGAGGGGGGCA TTTGCAAAGTGCAGC TERM 3190 2938810 - 2938844 + r 90 -13 -2.73124 | opp_overlap 2938811, overlap 2938809 TTAGGCCTAAAGACA ACCCCCCTCTATTA GCATAAG TAATAGAGGGGGGC ATTTGCAAAGTGCAG TERM 3191 2938843 - 2938811 - R 100 -16.5 -3.82202 | opp_overlap 2938810 2938809 TAGGCCTAAAGACAA CCCCCCTCTATTA GCATAAG TAATAGAGGGGGG CATTTGCAAAGTGCA Shal_2434 2940656 - 2938866 - | acyl-CoA dehydrogenase domain-containing protein TERM 3192 2939108 - 2939124 + g 78 -6.5 -4.58685 | overlap 2939110 ATGCCATGGAGGCTG CACCGAT AAT ATCGGGG TTTTTAGCCGCATTT TERM 3193 2939583 - 2939597 + g 78 -5.7 -4.84359 | CATTAGTGCACGAGT GCCTT CATTA AAGGC TTTTTGTGACAATAA TERM 3194 2940282 - 2940297 + g 70 -9 -3.40141 | opp_overlap 2940284 AGTGAGTCCGGGATA CATGGC AAAT GCCATG TTGGTTGAAGTTTTC TERM 3195 2940714 - 2940697 - H 73 -9.9 -3.21218 | AGTCGTTATTAGTAA TGGTCAG TGCT CTGACCA CCATAACCAAGTTTG TERM 3196 2941016 - 2941005 - g 70 -2.2 -5.00616 | CCCGTCGGTAAAAAA CCAC TATT ATGG GTCTCCAGCGCCGAT TERM 3197 2941557 - 2941544 - g 72 -6.7 -4.37092 | opp_overlap 2941544 AGTGCGCCGAGAAAA CAGCA AAAG TGCTG TGCTTTGGAACCCAT Shal_2435 2940876 - 2941721 + | aldose 1-epimerase TERM 3198 2941766 - 2941725 - T 71 -6.8 -4.08557 | gap 2, opp_overlap 2941728 2941732 2941735, overlap 2941722 2941735 GGCTGGAAATAATAA CGTGATAGAAGGTAAGCCTA ACGT TAGGCTCACCTTC--TCACT TAAGTTCGGCTGCAG TERM 3199 2941728 - 2941765 + T 73 -9.9 -3.18274 | opp_overlap 2941725 2941722 2941735, overlap 2941732 2941735 TGGAAATAATAACGT GATAGAAGGTAAGCCTA ACGT TAGGCTCACCTTCTCAC TTAAGTTCGGCTGCA TERM 3200 2941732 - 2941761 + T 91 -13.7 -2.57013 | opp_overlap 2941725 2941722 2941735, overlap 2941728 2941735 AATAATAACGTGATA GAAGGTAAGCCTA ACGT TAGGCTCACCTTC TCACTTAAGTTCGGC TERM 3201 2941735 - 2941758 + T 75 -9.6 -3.43564 | opp_overlap 2941725 2941722 2941735, overlap 2941732 2941728 AATAACGTGATAGAA GGTAAGCCTA ACGT TAGGCTCACC TTCTCACTTAAGTTC TERM 3202 2941758 - 2941735 - T 89 -11.8 -3.53307 | opp_overlap 2941735 2941732 2941728, overlap 2941725 2941722 AATAACGTGATAGAA GGTAAGCCTA ACGT TAGGCTCACC TTCTCACTTAAGTTC Shal_2436 2942127 - 2941888 - | hypothetical protein TERM 3203 2943782 - 2943763 - g 77 -3.5 -5.11613 | ACAGTAGCCAAAAAA GCGATGA GCAGCT TCGTCGC ATACTGCAACGACTC Shal_2437 2942766 - 2945975 + | hypothetical protein Shal_2438 2946078 - 2946278 + | hypothetical protein Shal_2439 2946303 - 2946623 + | hypothetical protein TERM 3204 2946670 - 2946686 + F 83 -10.9 -3.77722 | TCGTTCATCGCGGTA GCTGTGT GCC ACACAGC TTATTAATCCTTAGC TERM 3205 2946694 - 2946714 + F 89 -5.4 -5.41143 | CACACAGCTTATTAA TCCTTAGC GTTAA GCTGGGGA TTTTTTTCCAAGCTA Shal_2440 2946757 - 2947164 + | hypothetical protein TERM 3206 2947206 - 2947216 + F 73 -6.8 -4.18367 | TAACAGATGAGCAGT CCAC TTG GTGG TTTATATCTATCCTC Shal_2441 2947362 - 2947637 + | hypothetical protein Shal_2442 2948177 - 2947653 - | hypothetical protein Shal_2443 2949324 - 2948167 - | hypothetical protein TERM 3207 2948235 - 2948214 - G 76 -8.1 -4.1899 | opp_overlap 2948219 CCAGCTTAGGTAAAA GCCAAGTTA ATAG TAACTTAGC TAAGATCAGTAATGC Shal_2444 2950453 - 2949314 - | hypothetical protein TERM 3208 2950462 - 2950447 - G 91 -6.1 -5.49234 | opp_overlap 2950446 2950447 AGAGCCAATAAAAAA GGTGC ACAATG GCACC CTTATGTGATTTAAC Shal_2445 2951648 - 2950497 - | hypothetical protein TERM 3209 2950847 - 2950835 - G 72 -5.5 -4.42325 | overlap 2950832 2950844 ACACATAGAAAATAA GCGGT AAT ACCAC TAATAATGGCGGCAA TERM 3210 2951424 - 2951447 + g 90 -10.2 -4.29432 | opp_overlap 2951424 2951423 2951427, overlap 2951425 CGCTAACGCAAGAAT TGACGCTGCG AGCC CGCGGCGTCC TTTTAATGCCCTTTC TERM 3211 2951425 - 2951446 + g 86 -13.7 -3.16936 | opp_overlap 2951424 2951423 2951427, overlap 2951424 GCTAACGCAAGAATT GACGCTGCG AGCC CGCGGCGTC CTTTTAATGCCCTTT Shal_2446 2952327 - 2951650 - | Ion transport 2 domain-containing protein TERM 3212 2952553 - 2952578 + r 95 -11.9 -4.58395 | opp_overlap 2952556, overlap 2952556 TAAGGCTGAAAATAA AAACCCGCGAT AAAA ATCGCGGGTTA TTTTTACAGAATCGC TERM 3213 2952556 - 2952575 + r 100 -13.6 -4.40963 | opp_overlap 2952556, overlap 2952553 GGCTGAAAATAAAAA CCCGCGAT AAAA ATCGCGGG TTATTTTTACAGAAT TERM 3214 2952575 - 2952556 - R 100 -13.6 -5.45802 | opp_overlap 2952553 2952556 GGCTGAAAATAAAAA CCCGCGAT AAAA ATCGCGGG TTATTTTTACAGAAT Shal_2447 2953911 - 2952598 - | hypothetical protein Shal_2448 2955185 - 2953908 - | membrane-fusion protein TERM 3215 2954650 - 2954662 + g 72 -6.3 -4.3586 | TGGTTACGCATCTGG TCGAT AAT ATCGA TTTTGGTATAAATCC Shal_2449 2956348 - 2955182 - | membrane-fusion protein TERM 3216 2955454 - 2955470 + g 79 -4.4 -5.22312 | opp_overlap 2955454 CAGCGTCAAAAATGA CCAAGG GAACA TCTTGG TTTTTTACTCTAAAT Shal_2450 2957478 - 2956345 - | multidrug resistance efflux pump-like protein TERM 3217 2957443 - 2957427 - G 71 -3.7 -4.77759 | overlap 2957441 ATAACCGAGGAAAAA GACTC TTTAATT GAGTC ATCGTGCGCTGACTA Shal_2451 2958154 - 2957468 - | ABC transporter related TERM 3218 2957898 - 2957882 - G 72 -6.6 -4.21141 | CGGCAACAAATGAAA GCTTTG AAACA CAAAGC CAATCTCTTTATTGC Shal_2452 2959033 - 2958644 - | hypothetical protein TERM 3219 2959077 - 2959062 - R 80 -6.1 -4.75219 | opp_overlap 2959062 2959075, overlap 2959075 TAATCACCAACAAAA CCGTC ACTAAA GACGG TTGTCGGTATGACTT Shal_2453 2959617 - 2959213 - | hypothetical protein Shal_2454 2960547 - 2959948 - | GCN5-related N-acetyltransferase TERM 3220 2960219 - 2960231 + g 72 -4.8 -4.65895 | opp_overlap 2960214 TCGGTATTAACTGCG GTGC GCTGA GCAC TTTTTGAGTACCAGG Shal_2455 2961276 - 2960671 - | nitroreductase TERM 3221 2961321 - 2961303 - R 100 -6.7 -5.75945 | opp_overlap 2961303 2961294 AGGGCGCAAAAAAAA TCCCACC TATTT AGTGGGA TTTGGCTTGTTTAAT Shal_2456 2962052 - 2961456 - | DoxX family protein TERM 3222 2962002 - 2961976 - G 87 -10.8 -4.12532 | GGTGCGAGATATAAA CGCAGGGCTAGC GGT GCTACCCCTTCG CCATATTGAAGTAGC Shal_2457 2962993 - 2962151 - | hypothetical protein Shal_2458 2964814 - 2963657 - | aminoglycoside phosphotransferase TERM 3223 2964739 - 2964725 - G 70 -10 -3.09635 | ATTTTGATTACTCAA CCCTTG AGT CAAGGG CGCGATAAGGCTGAC TERM 3224 2964765 - 2964748 - G 79 -11.3 -3.30159 | opp_overlap 2964747 TCAAGGGCGCGATAA GGCTGAC ACTT GTCAGCC CTGATTGCACAAAAT Shal_2459 2965477 - 2964815 - | nicotinamide mononucleotide transporter PnuC TERM 3225 2965606 - 2965574 - R 86 -12.1 -3.36492 | opp_overlap 2965578 TTGTTAAGGTCATAA GTGGTTGCAGGGCAA TTC TTATCCTACAACCAC CACATCTAAATAAAT Shal_2460 2965882 - 2965622 - | hypothetical protein TERM 3226 2965896 - 2965911 + r 72 -10.4 -2.7411 | overlap 2965893 2965892 ATGATATTGACCTCA GCCACC AAAG GGTGGC TCAATTTGATTATTT Shal_2461 2968142 - 2966004 - | TonB-dependent receptor TERM 3227 2968410 - 2968394 - R 95 -6.5 -5.68039 | opp_overlap 2968394 2968409, overlap 2968386 2968382 AAACGCATAAAAAAA CGCCAGC CTT ACTGACG TTTTGTTAACGTTTG Shal_2462 2968841 - 2968452 - | hypothetical protein Shal_2463 2969395 - 2968910 - | thioesterase superfamily protein Shal_2464 2969891 - 2969388 - | thioesterase superfamily protein Shal_2465 2970244 - 2969888 - | histidine triad (HIT) protein TERM 3228 2970477 - 2970460 - g 76 -4.1 -5.01422 | gap 1 TTACAGAAAAAGAAA CCGCA-CT CTT AGACGCGG CAACAGAGCTAGTAC Shal_2466 2970441 - 2970854 + | TetR family transcriptional regulator TERM 3229 2970971 - 2970936 - T 89 -12.2 -3.52809 | opp_overlap 2970944, overlap 2970932 2970944 ATAAATTAGAATGAA TATAAAAATAGTCGCT TTAT ACCGACTATTTTTATA TCTGAGCTTGCTCCC TERM 3230 2970963 - 2970944 - T 79 -5 -5.1485 | opp_overlap 2970944, overlap 2970936 2970932 GAATGAATATAAAAA TAGTCGCT TTAT ACCGACTA TTTTTATATCTGAGC TERM 3231 2970944 - 2970963 + T 79 -5 -5.03994 | opp_overlap 2970936 2970932 2970944 GAATGAATATAAAAA TAGTCGCT TTAT ACCGACTA TTTTTATATCTGAGC Shal_2467 2971514 - 2971068 - | hypothetical protein Shal_2468 2971917 - 2971516 - | hypothetical protein Shal_2469 2972666 - 2972031 - | LuxR family transcriptional regulator Shal_2470 2973279 - 2972956 - | hypothetical protein TERM 3232 2973671 - 2973687 + r 90 -10.1 -4.43877 | opp_overlap 2973671 TTTTTACACAAAAAA GCCAGCT CTA GGCTGGC TTTATTTAGCAATTG TERM 3233 2973687 - 2973671 - R 100 -9.4 -5.36441 | opp_overlap 2973671 TTTTTACACAAAAAA GCCAGC TCTAG GCTGGC TTTATTTAGCAATTG Shal_2472 2974090 - 2973716 - | cytochrome c3 TERM 3234 2974302 - 2974332 + r 100 -15.5 -3.33696 | opp_overlap 2974303, overlap 2974303 TTTTGGGTAAAAAAA AGCGGTTGGGAGT ATTTA ACTCCCAACCGCC TTAGTTAGAAAAACG TERM 3235 2974303 - 2974331 + r 100 -19 -2.60075 | opp_overlap 2974303, overlap 2974302 TTTGGGTAAAAAAAA GCGGTTGGGAGT ATTTA ACTCCCAACCGC CTTAGTTAGAAAAAC TERM 3236 2974331 - 2974303 - R 100 -19 -5.75342 | opp_overlap 2974303 2974302 TTTGGGTAAAAAAAA GCGGTTGGGAGT ATTTA ACTCCCAACCGC CTTAGTTAGAAAAAC Shal_2473 2975215 - 2974352 - | heat shock protein HtpX TERM 3237 2975004 - 2975034 + g 77 -10.5 -3.39784 | opp_overlap 2975032, overlap 2975001 2975007 2975008 CGTTCAGTGTTATCA CGAGGGGTTGTGA TCACT TCACAACCCATTG TCTTCTTGGCCATCC TERM 3238 2975007 - 2975031 + g 72 -8.6 -3.83318 | overlap 2975001 2975004 2975008 TCAGTGTTATCACGA GGGGTTGTGA TCACT TCACAACCCA TTGTCTTCTTGGCCA TERM 3239 2975008 - 2975030 + g 77 -12.1 -2.89509 | overlap 2975001 2975007 2975004 CAGTGTTATCACGAG GGGTTGTGA TCACT TCACAACCC ATTGTCTTCTTGGCC Shal_2474 2976229 - 2975564 - | dethiobiotin synthase Shal_2475 2977018 - 2976248 - | methyltransferase type 11 Shal_2476 2978227 - 2977034 - | 8-amino-7-oxononanoate synthase Shal_2477 2979370 - 2978318 - | biotin synthase TERM 3240 2978362 - 2978374 + g 79 -9.1 -4.08767 | ACACTTTCTTGTCTT GCTGC GCA GCAGC TTTTGCCAACATGGC TERM 3241 2980934 - 2980900 - g 70 -5.1 -4.43477 | overlap 2980902 CTCATGCAATGAAAA CG-GTCGCTAGGCAAGT ATC ACTC-CCCAACGACGCG AGTCCTTTTATCAGC Shal_2478 2979618 - 2980958 + | adenosylmethionine-8-amino-7-oxononanoate aminotransferase TERM 3242 2980971 - 2980994 + F 70 -9.6 -2.64616 | opp_overlap 2980971 TAAACGCGACTCAAA CTTAGTCGGT GACC GCCGGCTAAG TACTGTCGCTAACGA Shal_2479 2981224 - 2983320 + | elongation factor G TERM 3243 2983390 - 2983368 - T 100 -13.6 -5.11112 | opp_overlap 2983368 AAACTTTAATAAAAA GCCTATAGAT TTT ATCTATAGGC TTTTTTATTGCCTGC TERM 3244 2983368 - 2983390 + T 100 -13.6 -5.4833 | opp_overlap 2983368 AAACTTTAATAAAAA GCCTATAGAT TTT ATCTATAGGC TTTTTTATTGCCTGC Shal_2480 2983887 - 2983423 - | hypothetical protein Shal_2481 2984674 - 2983949 - | NAD-dependent deacetylase Shal_2482 2984942 - 2985373 + | ferric uptake regulator TERM 3245 2985384 - 2985417 + T 82 -11.9 -2.9581 | opp_overlap 2985374 2985394, overlap 2985386 2985394 CATAATGCTATTTAG CATTAAAAAACCAGC TCTT GCTGGTTTTTTTGTG TCTGCTTGATCATTT TERM 3246 2985394 - 2985407 + T 100 -8.1 -5.76633 | opp_overlap 2985394, overlap 2985386 2985384 TTTAGCATTAAAAAA CCAGC TCTT GCTGG TTTTTTTGTGTCTGC TERM 3247 2985407 - 2985394 - T 91 -8.1 -5.1861 | opp_overlap 2985394 2985386 2985384 TTTAGCATTAAAAAA CCAGC TCTT GCTGG TTTTTTTGTGTCTGC Shal_2483 2985931 - 2985431 - | GCN5-related N-acetyltransferase TERM 3248 2986361 - 2986371 + G 71 -6.8 -4.13995 | opp_overlap 2986361 ACGCCCTTTAATCGA GAGC AAC GCTC TTTAGTTTATCAACG Shal_2484 2986082 - 2987734 + | ferredoxin-dependent glutamate synthase Shal_2485 2988177 - 2987869 - | hypothetical protein TERM 3249 2988381 - 2988395 + r 93 -11.4 -4.57341 | opp_overlap 2988381 ATCAGATACAAAAAA GGCGCT AAA AGCGCC TTTTTAAACAAGATT TERM 3250 2988395 - 2988381 - R 100 -11.4 -5.43414 | opp_overlap 2988381 ATCAGATACAAAAAA GGCGCT AAA AGCGCC TTTTTAAACAAGATT Shal_2486 2989288 - 2988416 - | succinyl-CoA synthetase, alpha subunit Shal_2487 2990454 - 2989288 - | succinyl-CoA synthetase subunit beta Shal_2488 2991729 - 2990533 - | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase TERM 3251 2991730 - 2991741 + r 76 -4.4 -5.02502 | AATTTCGATACTCAT GGAT TACG ATCC TTTTTATATAATGTC Shal_2489 2994584 - 2991762 - | alpha-ketoglutarate decarboxylase TERM 3252 2991915 - 2991927 + g 73 -7.7 -4.14874 | opp_overlap 2991898 2991899 2991913 2991915 GTGCTGACTACAATA CCAAG CAC CTTGG TTTTGCGGCTCTTCT TERM 3253 2994327 - 2994344 + g 78 -6.3 -4.62783 | gap 1, overlap 2994327 ATCGACTTCAGGATC GG-TCACC TTA GGTGAACC TTTTTGACGTCCATC TERM 3254 2994408 - 2994429 + g 70 -9.5 -3.05384 | AGAGTGGGCAGCTTC TGGTACATC AGCC GATGTGCCA TTCACTAGAGGGAGG TERM 3255 2994750 - 2994723 - R 100 -11.4 -5.39721 | opp_overlap 2994725 CCATGACACAAAAAA GAGCCACTTTCC ACAG GAAAAGTGACTC GTATAGAGCTATATC Shal_2490 2995496 - 2994789 - | succinate dehydrogenase iron-sulfur subunit Shal_2491 2997275 - 2995509 - | succinate dehydrogenase flavoprotein subunit TERM 3256 2995798 - 2995781 - G 71 -7.7 -3.97947 | TTGAGTTATCAGAAA GCTTGGC ATTC GCCAAAC GCTCTCTAATCGCCT TERM 3257 2996870 - 2996840 - G 70 -9.6 -3.09015 | GGTACAGGCAGTGAA GCAGTGCGTGACCG GTA CGGTCAGCCGCTGC TGCAGTACGAGCAGC Shal_2492 2997623 - 2997276 - | succinate dehydrogenase hydrophobic membrane anchor Shal_2493 2997991 - 2997617 - | succinate dehydrogenase cytochrome b556 subunit Shal_2494 2998423 - 2999712 + | type II citrate synthase TERM 3258 2999803 - 2999776 - f 72 -10 -2.57795 | opp_overlap 2999782, overlap 2999782 GTTAGCATTAATTGA TAAAAAGCACTC AATC GAGTGCTTTTTT TATGTCTATATTGTT TERM 3259 2999782 - 2999797 + F 100 -9 -5.77988 | opp_overlap 2999782 2999776 ATTAATTGATAAAAA GCACTC AATC GAGTGC TTTTTTTATGTCTAT TERM 3260 2999797 - 2999782 - f 90 -9 -4.92314 | opp_overlap 2999782, overlap 2999776 ATTAATTGATAAAAA GCACTC AATC GAGTGC TTTTTTTATGTCTAT TERM 3261 3000551 - 3000569 + G 71 -7.4 -3.89346 | overlap 3000541 CCGCTCACCTATCGA GGGTGTTG TAG CAACACGC TTTGTAAAGTCCGGC Shal_2495 3000057 - 3001118 + | RND family efflux transporter MFP subunit TERM 3262 3001299 - 3001337 + G 70 -9.5 -3.05522 | overlap 3001298 ATGTTTGCGGTCATT CTTTTCGGCATGGTGGG TTTCT CCCGCCTTGCGGTAAAG CTTTTACCGGACTTG Shal_2496 3001233 - 3004526 + | acriflavin resistance protein TERM 3263 3005354 - 3005338 - g 72 -6.5 -4.3586 | opp_overlap 3005338 3005333 TCACTTAGATCAAAA CTACGCC GTT GGCTTAG ATGTGTTTAAGGAGT TERM 3264 3005438 - 3005458 + G 79 -8.4 -4.30987 | GCTAAGCGTGACTCA CAGTTTGA AGGCA TCAAACTG TTTGTTATGGAAGAT Shal_2497 3004523 - 3007600 + | acriflavin resistance protein TERM 3265 3007648 - 3007663 + F 83 -6.1 -5.055 | opp_overlap 3007642 3007648 AATTAAGACCAAAAA GGCTG TTAACT CAGCC TTTTTTACACATTAC TERM 3266 3007663 - 3007648 - f 82 -6.1 -4.90136 | opp_overlap 3007648, overlap 3007642 AATTAAGACCAAAAA GGCTG TTAACT CAGCC TTTTTTACACATTAC Shal_2498 3007777 - 3009222 + | hypothetical protein Shal_2499 3009439 - 3011754 + | hypothetical protein Shal_2500 3011994 - 3013364 + | sigma-54 dependent trancsriptional regulator Shal_2501 3013408 - 3014208 + | DSBA oxidoreductase Shal_2502 3014934 - 3017285 + | hypothetical protein TERM 3267 3017418 - 3017391 - T 100 -21.4 -3.60151 | opp_overlap 3017391 GCCTTGAAATGACAA GAGGGCGACGGT TAAT ACCGTCGCCCTC TTTATACCGATTGAT TERM 3268 3017391 - 3017418 + T 100 -21.4 -3.89881 | opp_overlap 3017391 GCCTTGAAATGACAA GAGGGCGACGGT TAAT ACCGTCGCCCTC TTTATACCGATTGAT Shal_2503 3020522 - 3017487 - | peptidase M11 gametolysin TERM 3269 3021027 - 3021013 - R 90 -8.5 -5.16572 | opp_overlap 3021013 ATCTAATGTAAAAAA GCGCC ATAGA GGCGC TTTTTAAGGATTGCT TERM 3270 3021013 - 3021027 + r 87 -8.5 -4.62872 | opp_overlap 3021013 ATCTAATGTAAAAAA GCGCC ATAGA GGCGC TTTTTAAGGATTGCT Shal_2504 3021220 - 3021047 - | hypothetical protein Shal_2505 3022224 - 3021232 - | tetraacyldisaccharide 4'-kinase TERM 3271 3021636 - 3021652 + g 72 -6.5 -4.36914 | opp_overlap 3021636 CCTTACCACCATTAA CGATGAC ATG GTCAACG TTTTGTAAACGCCAA Shal_2506 3024048 - 3022225 - | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA Shal_2507 3026432 - 3024081 - | DNA internalization-related competence protein ComEC/Rec2 TERM 3272 3024322 - 3024305 - G 71 -3.3 -4.86731 | overlap 3024318 CTGCTGGAAACAAAA CCAGCTC AGGA GAGACGG CATCAATAAATGATT Shal_2508 3026464 - 3026970 + | hypothetical protein TERM 3273 3027032 - 3026986 - T 83 -11.1 -3.76125 | opp_overlap 3026994 3027001, overlap 3027001 GCACGCCAACTTAAA TTTCCCAATAAAAAAGCAGCC ATTTA GGCTGCTTTTTTATTGCTTAA AAGAACGAGCCTATC TERM 3274 3026994 - 3027024 + T 100 -15.7 -3.33696 | opp_overlap 3026986 3027001, overlap 3027001 ACTTAAATTTCCCAA TAAAAAAGCAGCC ATTTA GGCTGCTTTTTTA TTGCTTAAAAGAACG TERM 3275 3027001 - 3027017 + T 100 -9.4 -5.5604 | opp_overlap 3027001 3026986, overlap 3026994 TTTCCCAATAAAAAA GCAGCC ATTTA GGCTGC TTTTTTATTGCTTAA TERM 3276 3027017 - 3027001 - T 100 -9.4 -5.4505 | opp_overlap 3026994 3027001, overlap 3026986 TTTCCCAATAAAAAA GCAGCC ATTTA GGCTGC TTTTTTATTGCTTAA Shal_2509 3027840 - 3027043 - | peptidase M23B Shal_2510 3028797 - 3027907 - | hypothetical protein TERM 3277 3028922 - 3028948 + r 90 -12.4 -3.56268 | opp_overlap 3028921 3028918 3028925, overlap 3028925 TTAGCTTACAATGAT CAAGCCGAAC ACTTATG GTTCGGCTTG TTAATTTGCCTCTAT TERM 3278 3028925 - 3028945 + r 77 -8.3 -3.90425 | opp_overlap 3028925 3028921 3028918, overlap 3028922 GCTTACAATGATCAA GCCGAAC ACTTATG GTTCGGC TTGTTAATTTGCCTC TERM 3279 3028945 - 3028925 - R 70 -8.3 -3.30474 | opp_overlap 3028922 3028925, overlap 3028921 3028918 GCTTACAATGATCAA GCCGAAC ACTTATG GTTCGGC TTGTTAATTTGCCTC Shal_2511 3030037 - 3029009 - | nucleoid-associated protein NdpA Shal_2512 3030519 - 3030737 + | hypothetical protein Shal_2513 3030816 - 3032600 + | sulfatase TERM 3280 3032844 - 3032828 - T 100 -12.3 -5.69793 | opp_overlap 3032828 ACATTAAACAAAAAA GCCAGCT ATT AGCTGGC TTTTTTGTATCTGAA TERM 3281 3032828 - 3032844 + T 100 -12.3 -5.4251 | opp_overlap 3032828 ACATTAAACAAAAAA GCCAGCT ATT AGCTGGC TTTTTTGTATCTGAA TERM 3282 3032881 - 3032908 + T 100 -15.8 -4.42386 | opp_overlap 3032881 3032903 TACTGAAATAAAAAA GCGCTGTAATTA TTAA TAATTACAGCGC TTTTATCACTGCCGA TERM 3283 3032908 - 3032881 - T 100 -15.8 -5.65927 | opp_overlap 3032881, overlap 3032903 TACTGAAATAAAAAA GCGCTGTAATTA TTAA TAATTACAGCGC TTTTATCACTGCCGA Shal_2514 3033152 - 3032928 - | hypothetical protein TERM 3284 3034019 - 3034039 + G 71 -10.5 -2.73994 | overlap 3034017 ATGGCCTAGTGTATG CGAGTATTG GTT CAATGCTCG TCATCTTAACCCCCT Shal_2515 3033553 - 3035751 + | diguanylate cyclase Shal_2516 3037274 - 3035835 - | hypothetical protein TERM 3285 3037466 - 3037479 + r 73 -8.1 -3.89212 | opp_overlap 3037466 CGGCCTAAAGAAAAA GACGC CTAG GCGTC TTTCGTATATCAATA TERM 3286 3037479 - 3037466 - R 91 -8.1 -5.27335 | opp_overlap 3037466 CGGCCTAAAGAAAAA GACGC CTAG GCGTC TTTCGTATATCAATA Shal_2517 3038362 - 3037532 - | NAD synthetase TERM 3287 3038820 - 3038808 - g 72 -4.7 -4.63486 | ATGGGCGCAATAAAA GCTGC ATG GCGGC ATTGGCAAGATCCGG TERM 3288 3038995 - 3039011 + G 76 -4.3 -5.06089 | opp_overlap 3038995 3038990, overlap 3038990 TCGCCACCAAGAATA TGGCCGC TTT GCTGCTA TTTTCTTTATCCTTT Shal_2518 3038532 - 3039176 + | lysine exporter protein LysE/YggA Shal_2519 3040592 - 3039240 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 3289 3040011 - 3040025 + g 71 -10 -3.14132 | GACAAACGGCTTATG CTGTCG GCT CGACAG TTGGTACAAGGCCCG Shal_2520 3042355 - 3040589 - | histidine kinase TERM 3290 3041272 - 3041308 + g 100 -8.8 -5.33921 | gap 1, opp_overlap 3041283, overlap 3041275 GAGTGATCTGCCCAA GATCGGCAAGATGTTGC TGCT GCGACATC-TGCTGCTC TTTTTTACTTAATTT TERM 3291 3041883 - 3041861 - G 75 -9.9 -3.61398 | opp_overlap 3041873 CTCTTTGGCTAATAA CGCTTGAAC CTTCT GCTCAAGCG CAGCTTTCTTAGCCT Shal_2521 3042726 - 3043472 + | hypothetical protein TERM 3292 3044566 - 3044623 + G 70 -2.3 -4.96848 | overlap 3044570 CTACCAATTTATGGA CATATACAG-CGCCATTGGTGGTAGTG GCTCGA CACTGTCATTAATTGTGGCTGTAT-TG TTTTTCTCTAAGAGC Shal_2522 3043772 - 3045856 + | diguanylate phosphodiesterase TERM 3293 3046554 - 3046536 - T 72 -10.4 -2.53263 | opp_overlap 3046535 CTTATTCGGAATTCA GCCTAATA TGC TATTAGGC GTCTATGGAGTTGTA TERM 3294 3046883 - 3046903 + T 71 -6.1 -4.25104 | overlap 3046886 CAGTAATTACCTTTT CAGGAGGGT TAT ACCATCTTG TTTTAATAGGGAAAA Shal_2523 3051246 - 3047155 - | proprotein convertase P Shal_2524 3052828 - 3051233 - | hypothetical protein Shal_2525 3054279 - 3053086 - | transposase IS204/IS1001/IS1096/IS1165 family protein TERM 3295 3055054 - 3055021 - R 71 -9.6 -2.78384 | GCCGTGGTGAGTAGA TGCGGTCTGCGTAT CTACAT ATACGCATGCCGCA AACACTTAGAACCAC Shal_2526 3057006 - 3055072 - | radical SAM domain-containing protein TERM 3296 3056974 - 3056933 - G 70 -2.3 -5.07567 | TGAGAGCGTAAAAAA CCAGTTAAATACGCTGT TGCCGGAT AAGGCGTATTCAGCTGG GTCATTGGTGGAGTC Shal_2527 3057314 - 3057658 + | hypothetical protein TERM 3297 3057713 - 3057729 + T 78 -3 -5.44638 | gap 1 GCTCTACTGCTGATG CGCACAC CCTA GT-TGCG TTTTGTTTTTGTTGT Shal_2528 3059254 - 3057701 - | binding-protein-dependent transport systems inner membrane component Shal_2529 3059987 - 3059256 - | ABC transporter related TERM 3298 3059869 - 3059899 + g 70 -2.5 -5.00616 | TTAATTAGGGTCGAC TTGCCACTACCGG AACGC CCAATAATGGCAA TTTTTTCACCACGGG Shal_2530 3060846 - 3059992 - | phosphonate ABC transporter, periplasmic phosphonate-binding protein Shal_2531 3061133 - 3061807 + | two component transcriptional regulator Shal_2532 3061798 - 3063150 + | histidine kinase Shal_2533 3064179 - 3063487 - | 2OG-Fe(II) oxygenase Shal_2534 3065150 - 3064236 - | LysR family transcriptional regulator TERM 3299 3064542 - 3064516 - G 76 -2.3 -5.40072 | overlap 3064517 3064520 3064529 TCCTCGGTAAAAAAA TC-CAGTGCAGAC AGC GTC-GCACGGCGA AGCTTCAACGTAATA TERM 3300 3065560 - 3065548 - g 70 -4.8 -4.41348 | GTGGCGGCAAATAAA GCTC TTGCC GAGC GCTTACCATTTTCAG Shal_2535 3065359 - 3067410 + | beta-lactamase domain-containing protein TERM 3301 3067444 - 3067411 - f 73 -6.7 -4.30793 | gap 1, opp_overlap 3067421, overlap 3067412 GCAGATAACAAATAA TCGCTCTGCAGGGGAC TGC GTCCCCTGCT-ATCAA CGCACTACTATCAGC TERM 3302 3067421 - 3067435 + F 79 -11.4 -2.62263 | opp_overlap 3067411 3067412 AATAATCGCTCTGCA GGGGAC TGC GTCCCC TGCTATCAACGCACT TERM 3303 3067530 - 3067553 + F 71 -9.4 -2.82759 | GACCCCTCTCTTCCC GGCTGGGGGC TTCG GCCCCCTCCC TCTCATGAGTATATT Shal_2536 3067569 - 3068345 + | hypothetical protein TERM 3304 3068648 - 3068671 + G 70 -9.7 -3.05596 | TAGGACAGTTGCAAG TCGGTAACT TTGTTC AGTTACCGA TTGCGTGGAAAGATC TERM 3305 3069528 - 3069508 - g 81 -4.7 -5.15634 | overlap 3069510 GACCGGAGTAAAAAA GCCAGAACA CCT TATTCTGCC CTCGGTTATCTCTAT Shal_2537 3068608 - 3069864 + | metal dependent phosphohydrolase Shal_2538 3069972 - 3070286 + | hypothetical protein TERM 3306 3070288 - 3070277 - T 72 -4.4 -4.7497 | opp_overlap 3070277 TCCACTCAGGAAAAA TGCT AAGT AGCA CTTATACCGATTGGT TERM 3307 3070330 - 3070345 + T 100 -10.4 -5.26316 | opp_overlap 3070330 CGTAATGGCAAAAAA GCTCGC AATC GCGAGC TTTTTTATGCAATAG TERM 3308 3070345 - 3070330 - T 93 -10.4 -5.09426 | opp_overlap 3070330 CGTAATGGCAAAAAA GCTCGC AATC GCGAGC TTTTTTATGCAATAG Shal_2539 3071316 - 3070369 - | magnesium and cobalt transport protein CorA Shal_2540 3071791 - 3071426 - | hypothetical protein Shal_2541 3071938 - 3072612 + | hypothetical protein TERM 3309 3072649 - 3072632 - T 100 -11.3 -5.52384 | opp_overlap 3072631 3072630 TCGCTATCAAAAAAA CCGCTCT TGTG AGAGCGG GCTTCTTCTATCTGC Shal_2542 3073667 - 3072690 - | LysR family transcriptional regulator Shal_2543 3073837 - 3074703 + | purine nucleoside phosphorylase Shal_2544 3074716 - 3075978 + | nucleoside transporter TERM 3310 3076016 - 3076001 - f 91 -11.8 -4.05033 | opp_overlap 3076001 GCTATTGTAGACAAA GGGCGG AATT CCGCCC TTTTTTATTGAAGGT TERM 3311 3076001 - 3076016 + F 100 -11.8 -5.45652 | opp_overlap 3076001 GCTATTGTAGACAAA GGGCGG AATT CCGCCC TTTTTTATTGAAGGT TERM 3312 3076313 - 3076331 + G 72 -8.8 -3.52668 | CCTGACTCAAACGGC GGCGTTCG CAA CGAGTGCC TTGTATACATCGGTT Shal_2545 3076038 - 3076916 + | hypothetical protein TERM 3313 3077706 - 3077752 + T 100 -20.4 -3.55761 | opp_overlap 3077719, overlap 3077708 3077719 GAAAATCACAAATTG CAGACGTAAAAAAGCCCGCTAC ATG GTAGCGGGCTTTTTTGCTTCTC TTTCGAGAATAAATA TERM 3314 3077708 - 3077750 + T 100 -23 -3.35597 | opp_overlap 3077719, overlap 3077706 3077719 AAATCACAAATTGCA GACGTAAAAAAGCCCGCTAC ATG GTAGCGGGCTTTTTTGCTTC TCTTTCGAGAATAAA TERM 3315 3077739 - 3077719 - T 100 -16.9 -5.1287 | opp_overlap 3077719 3077708 3077706 TGCAGACGTAAAAAA GCCCGCTAC ATG GTAGCGGGC TTTTTTGCTTCTCTT TERM 3316 3077719 - 3077739 + T 100 -16.9 -5.3671 | opp_overlap 3077719, overlap 3077708 3077706 TGCAGACGTAAAAAA GCCCGCTAC ATG GTAGCGGGC TTTTTTGCTTCTCTT TERM 3317 3077999 - 3078019 + T 100 -16.9 -4.0174 | opp_overlap 3077999 CCAAAAACGAAAAAA GCCCGCTAC ATC GTAGCGGGC TTTCTCACTTCTCTT TERM 3318 3078019 - 3077999 - T 100 -16.9 -5.54079 | opp_overlap 3077999 CCAAAAACGAAAAAA GCCCGCTAC ATC GTAGCGGGC TTTCTCACTTCTCTT TERM 3319 3079415 - 3079426 + T 72 -4.4 -4.7254 | CCTCTTGCGAGTTTG CACA GTAC TGTG TTTTTGATAAACAGT TERM 3320 3079921 - 3079937 + T 86 -9.4 -4.08546 | overlap 3079903 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 3321 3080719 - 3080731 + T 85 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 3322 3081356 - 3081371 + T 77 -6.2 -4.60041 | opp_overlap 3081350 3081356 3081354, overlap 3081351 AACAACAAGCTAAGA CACTTA ATGT TAAGTG TTTTTAGAACTCAAT TERM 3323 3083710 - 3083700 - T 73 -8.2 -3.83998 | opp_overlap 3083700 GGATGTGAGATTAAA GCGC AAG GCGC TTTCTTAATAAAATT TERM 3324 3083700 - 3083710 + T 77 -8.2 -4.25458 | opp_overlap 3083700 GGATGTGAGATTAAA GCGC AAG GCGC TTTCTTAATAAAATT TERM 3325 3083849 - 3083881 + T 100 -15 -4.04326 | opp_overlap 3083851 3083857, overlap 3083851 3083857 TCACCGAATGCTGAT AACGAAAATGCCCC TAGAT GGGGCATTTTCGTG TTTGCTATTTAGTTC TERM 3326 3083851 - 3083879 + T 100 -17.6 -3.59733 | opp_overlap 3083851 3083857, overlap 3083849 3083857 ACCGAATGCTGATAA CGAAAATGCCCC TAGAT GGGGCATTTTCG TGTTTGCTATTTAGT TERM 3327 3083879 - 3083851 - T 100 -17.6 -3.3344 | opp_overlap 3083849 3083851 3083857, overlap 3083857 ACCGAATGCTGATAA CGAAAATGCCCC TAGAT GGGGCATTTTCG TGTTTGCTATTTAGT TERM 3328 3083857 - 3083873 + T 91 -9.4 -4.51363 | opp_overlap 3083857 3083851, overlap 3083851 3083849 TGCTGATAACGAAAA TGCCCC TAGAT GGGGCA TTTTCGTGTTTGCTA TERM 3329 3083873 - 3083857 - T 91 -9.4 -4.48987 | opp_overlap 3083851 3083849 3083857, overlap 3083851 TGCTGATAACGAAAA TGCCCC TAGAT GGGGCA TTTTCGTGTTTGCTA Shal_2547 3084472 - 3083933 - | D,D-heptose 1,7-bisphosphate phosphatase Shal_2548 3084662 - 3085966 + | peptidase M24 TERM 3330 3086042 - 3085993 - f 76 -2.1 -5.37345 | opp_overlap 3086001, overlap 3086012 TTCAATCATAAAAAA TAGCGTTAGGCGCAATAATGCAA TAGT TCATGTTATTGCGCCTCTCTCTA CTCGGCCATTATCGC Shal_2549 3086141 - 3087421 + | amino acid permease-associated region Shal_2550 3087820 - 3087596 - | hypothetical protein TERM 3331 3088575 - 3088565 - g 70 -2.4 -4.98758 | AAAAATCTAGAAAAA GCCG CAA CTGC ATATAGAAACATCAG TERM 3332 3089544 - 3089556 + G 71 -6.9 -4.1196 | TTTGTAACGCCTCGT CCGGC TAT GCTGG TTTTGCGGGTACATT Shal_2551 3088094 - 3089623 + | hypothetical protein TERM 3333 3090207 - 3090231 + G 74 -5.8 -4.58283 | AGATTCCTGCAGAGT TAGCGTTTAA TATTT TTAGGCGCTA TTTTTGGGCGGATTG Shal_2552 3089657 - 3090907 + | NAD/FAD-binding protein-like protein TERM 3334 3090988 - 3090969 - T 93 -10 -4.72617 | opp_overlap 3090969 CCACAAAATAAGAAA CCACCGAC CTAA GTCGATGG TTTTTTTACTTATAT TERM 3335 3090969 - 3090988 + T 100 -7.8 -5.69379 | opp_overlap 3090969 CCACAAAATAAGAAA CCACCGAC CTAA GTCGATGG TTTTTTTACTTATAT Shal_2553 3092460 - 3091195 - | FAD dependent oxidoreductase TERM 3336 3091609 - 3091597 - G 72 -9.1 -3.54951 | overlap 3091600 TACCGGACGAGACAA GCAGC TGC GCTGC GGCATCATCAAGTGA Shal_2554 3093669 - 3092491 - | proline racemase TERM 3337 3094251 - 3094241 - g 74 -8.2 -3.93583 | TAACTGAGCTACAAA GCCG TTT CGGC GAGCGTTTCAGCATC Shal_2555 3093709 - 3094623 + | dihydrodipicolinate synthase TERM 3338 3094647 - 3094678 + F 84 -12.4 -3.09015 | opp_overlap 3094648 3094664 TCTGATCGCCAGTAA ACCAGCCGTTTAAT GCAG ATTAAGCGGCTGGC TTAGATCACTCTAAC TERM 3339 3094677 - 3094648 - f 95 -13.7 -3.73775 | opp_overlap 3094647, overlap 3094664 CTGATCGCCAGTAAA CCAGCCGTTTAAT GCAG ATTAAGCGGCTGG CTTAGATCACTCTAA TERM 3340 3094727 - 3094749 + F 100 -3.4 -6.10295 | AACGATAACAATGGA GTGTTTTACA TGC TGAAAGGCAC TTTTTTTTGTGTTGA TERM 3341 3095428 - 3095456 + G 75 -6.5 -4.52589 | overlap 3095430 GACTGGTGACCCTAT CAGTGATGGCTCC GAT GGTGCCAACGCAG TTTTCTATGGCGACA Shal_2556 3094736 - 3095737 + | proline racemase Shal_2557 3095780 - 3097345 + | aldehyde dehydrogenase TERM 3342 3097363 - 3097381 + F 86 -10.3 -4.08221 | opp_overlap 3097360 3097362 3097359 3097357, overlap 3097360 CGGTCAAAATATGAT GGGGAAC CATCT GTTCCCC TTTCATTATATTGAC TERM 3343 3097934 - 3097964 + G 80 -6.9 -4.56775 | opp_overlap 3097933 3097936, overlap 3097936 TCAAGGTCTTAACAC TAGCTGTGACCGA TATAT TCGATTACAGCTG TTTTTAGCAAGCGGT Shal_2558 3097452 - 3098123 + | GntR family transcriptional regulator TERM 3344 3098179 - 3098198 + F 93 -10 -4.98531 | opp_overlap 3098171 ATACAGATCCCATAG GGCAGAGC TAAG GTTCTGCC TTTTTAATTTAAGAG TERM 3345 3098544 - 3098558 + G 78 -4.9 -4.9792 | opp_overlap 3098543 3098544, overlap 3098543 GCATTCGATATCAAC GCTGC ATGTA GCGGC TTTTTATATGGCCTA TERM 3346 3098624 - 3098644 + G 75 -3.2 -5.15634 | TAAAAAAGTATTGGT GATTGGTG CTGAA CGCCTATC TTTTTTCCTCGACTG Shal_2559 3098223 - 3099287 + | 3-oxoacyl-(acyl carrier protein) synthase III TERM 3347 3099323 - 3099341 + T 100 -13.2 -5.72616 | opp_overlap 3099323 ATAGCTGAATAAAAA CACCGAAC TCA GTTCGGTG TTTTTTTATGTCAGT TERM 3348 3099341 - 3099323 - T 100 -13.2 -5.09204 | opp_overlap 3099323 ATAGCTGAATAAAAA CACCGAAC TCA GTTCGGTG TTTTTTTATGTCAGT Shal_2560 3099977 - 3099393 - | hypothetical protein TERM 3349 3099789 - 3099799 + g 72 -5.4 -4.39002 | opp_overlap 3099771 TAGGCCCCCAGGCTC TGGT GCA ACCA TTTTATCGCCAGTTT TERM 3350 3100130 - 3100142 + H 70 -3.3 -4.84359 | CTTGATCCGTTTTAG CAAGG CTT CCTCG TTTTTATGCAAGTAA Shal_2561 3100268 - 3100804 + | heme NO binding domain-containing protein TERM 3351 3100918 - 3100903 - g 72 -3.2 -5.01732 | overlap 3100891 3100890 3100915 AAGGCTGCTAAAAAA GCAGCT GAAA AGCTTC TCGAAGAAAAAAGTC Shal_2562 3100819 - 3102558 + | histidine kinase TERM 3352 3102566 - 3102556 - T 75 -5.4 -4.78848 | overlap 3102558 3102561 TGGGCAAAGATAAAA TAGC ACC GCTA TTGCGGCACAGAGTT TERM 3353 3102575 - 3102558 - T 71 -6.9 -4.00843 | overlap 3102556 3102561 GGCAAAGATAAAATA GCACCGC TATT GCGGCAC AGAGTTAACCCAATA Shal_2563 3103197 - 3102580 - | exonuclease RNase T and DNA polymerase III Shal_2564 3105162 - 3103315 - | CBS domain-containing protein TERM 3354 3103720 - 3103708 - G 78 -6.2 -4.58685 | overlap 3103710 AAACTTTCTGAAAAA GCCC AGCGG GGGC GCGCTTGTTAACGAG TERM 3355 3103864 - 3103849 - G 72 -4.7 -4.70659 | GCGCATATCGAAAAA GATGC TGGCAT GCATC AATGCCTTAGGCTCG TERM 3356 3105257 - 3105272 + r 89 -10.4 -4.31085 | opp_overlap 3105257 ATAGATAAACAAAAA GAGCGC CGAA GCGCTC TTTTACCTTGCTCTA TERM 3357 3105272 - 3105257 - R 100 -10.4 -5.4433 | opp_overlap 3105257 ATAGATAAACAAAAA GAGCGC CGAA GCGCTC TTTTACCTTGCTCTA Shal_2565 3107020 - 3105302 - | Na+/solute symporter Shal_2566 3107326 - 3107060 - | hypothetical protein TERM 3358 3107524 - 3107512 - R 71 -4.1 -4.86731 | GTTTTTCAAACAAAA CCTTA GAC CAAGG TAGTAATCGAATATG TERM 3359 3107720 - 3107680 - R 91 -10.6 -4.5538 | ATAAAATTCATAAAA CCGCTCTCTTCATAGCGT AACTG ACACTATGAAAAAAGTGG AATTACATAAGCTAA Shal_2567 3108919 - 3108026 - | protein serine/threonine phosphatase Shal_2568 3110008 - 3109067 - | transporter DMT superfamily protein Shal_2569 3110459 - 3111868 + | hypothetical protein TERM 3360 3111921 - 3111889 - f 93 -11.3 -4.47551 | opp_overlap 3111896, overlap 3111896 ATTGAATTTATAAAA CACATAAGCCCCGAC AAT ATCGGGGCTTTTCTG TAGGCCTAGTAATAA TERM 3361 3111896 - 3111914 + F 95 -11.7 -4.53303 | opp_overlap 3111889 3111896 TTATAAAACACATAA GCCCCGA CAATA TCGGGGC TTTTCTGTAGGCCTA TERM 3362 3111914 - 3111896 - f 93 -12.4 -3.86658 | opp_overlap 3111896, overlap 3111889 TTATAAAACACATAA GCCCCGAC AAT ATCGGGGC TTTTCTGTAGGCCTA TERM 3363 3112029 - 3112019 - f 71 -6.8 -4.08216 | opp_overlap 3112019 3112016, overlap 3112007 TGATTGCGCCTAAAA GCCA CAA TGGC TTATTTATTCTGGCT TERM 3364 3112019 - 3112029 + F 73 -6.8 -4.28115 | opp_overlap 3112007 3112019, overlap 3112016 TGATTGCGCCTAAAA GCCA CAA TGGC TTATTTATTCTGGCT Shal_2570 3112191 - 3112670 + | PEBP family protein TERM 3365 3112896 - 3112879 - T 93 -8.4 -5.29445 | CCGGAACAACAAAAA GCCCAC GTTTAA GTGGGC TCATCAATAACAATG Shal_2571 3113557 - 3112919 - | DSBA oxidoreductase Shal_2572 3114440 - 3113598 - | NAD-dependent epimerase/dehydratase TERM 3366 3114379 - 3114359 - G 82 -7.5 -4.59773 | overlap 3114361 GTTTACTGCCAAAAA CAGTCACCC CAT GGGCGACCA ATGCCTTAGCGAGTG TERM 3367 3114377 - 3114361 - G 80 -10.1 -3.91506 | overlap 3114359 TTACTGCCAAAAACA GTCACCC CAT GGGCGAC CAATGCCTTAGCGAG Shal_2573 3115740 - 3114544 - | metal dependent phosphohydrolase TERM 3368 3116290 - 3116307 + r 100 -11.3 -5.9663 | AATTAAGATTCTTTA GACGCTG CTTG CAGCGTC TTTTTTTTACTCTTT Shal_2574 3116795 - 3116277 - | hypothetical protein TERM 3369 3116900 - 3116931 + r 81 -11.8 -2.51133 | opp_overlap 3116901 3116909, overlap 3116899 3116909 CGACAGTTTTCAAGC ATTAAAAAAGCTCC CTAA GGAGCTTTTTTAAA ATTAATGGGTCACTA TERM 3370 3116930 - 3116901 - R 95 -15.3 -2.72049 | opp_overlap 3116900 3116899 3116909, overlap 3116909 GACAGTTTTCAAGCA TTAAAAAAGCTCC CTAA GGAGCTTTTTTAA AATTAATGGGTCACT TERM 3371 3116922 - 3116909 - R 91 -8.1 -5.2189 | opp_overlap 3116909 3116900 3116899, overlap 3116901 TCAAGCATTAAAAAA GCTCC CTAA GGAGC TTTTTTAAAATTAAT TERM 3372 3116909 - 3116922 + r 88 -8.1 -5.10029 | opp_overlap 3116901 3116909, overlap 3116900 3116899 TCAAGCATTAAAAAA GCTCC CTAA GGAGC TTTTTTAAAATTAAT Shal_2575 3118947 - 3116944 - | DNA ligase, NAD-dependent TERM 3373 3118986 - 3118971 - R 95 -11.8 -4.62803 | opp_overlap 3118971 CCAAATAATAACAAA GGCCGC TACT GCGGCC TTTCAAATGTGTATA TERM 3374 3118971 - 3118986 + r 89 -11.8 -3.66139 | opp_overlap 3118971 CCAAATAATAACAAA GGCCGC TACT GCGGCC TTTCAAATGTGTATA Shal_2576 3120025 - 3119105 - | cell division protein ZipA Shal_2577 3123480 - 3120049 - | chromosome segregation protein SMC TERM 3375 3120519 - 3120531 + g 76 -7.7 -4.21343 | opp_overlap 3120518 AAGTATCTTTAAAGC GAGAC TTA GTCTC TTTGTCTATCTTACG TERM 3376 3120859 - 3120873 + g 76 -5 -4.82661 | overlap 3120858 3120861 TTGAGTCAAGTCTTC TAGCTT CGC AAGCTG TTGTTTTTTATTCGT TERM 3377 3121035 - 3121066 + g 89 -8.9 -4.64676 | overlap 3121037 CCTGCGCACTGTCTT TG-GCGTCTAACTGC TTAT GCAGTT-GACGCTCA TTTTGTTCAAGCTCA TERM 3378 3121037 - 3121063 + g 79 -11.7 -3.25538 | gap 1, overlap 3121035 TGCGCACTGTCTTTG GCGTCTAACTGC TTAT GCAGTT-GACGC TCATTTTGTTCAAGC Shal_2578 3123698 - 3124471 + | putative sulfate transport protein CysZ TERM 3379 3124569 - 3124528 - T 100 -20.5 -3.85698 | overlap 3124568 CTTTTTTCTTACAAA TGTCTTGTCCTGAAATCTG TTTA CATATTTCAGGACAAGACA TTAAAAAAGCAGCCA TERM 3380 3124602 - 3124568 - T 95 -13.9 -3.27951 | gap 1, opp_overlap 3124571 3124578, overlap 3124528 3124571 3124578 TATTTCAGGACAAGA CATTAAAAAAGCAGCC ATCT GGCTGCTTTTTTA-TG GGTTACAATCAAGCT TERM 3381 3124600 - 3124571 - T 100 -16.7 -2.51872 | opp_overlap 3124571 3124578, overlap 3124568 3124578 TTCAGGACAAGACAT TAAAAAAGCAGCC ATCT GGCTGCTTTTTTA TGGGTTACAATCAAG TERM 3382 3124571 - 3124600 + T 100 -16.7 -2.53876 | opp_overlap 3124568 3124571 3124578, overlap 3124578 TTCAGGACAAGACAT TAAAAAAGCAGCC ATCT GGCTGCTTTTTTA TGGGTTACAATCAAG TERM 3383 3124578 - 3124593 + T 100 -10.4 -5.31456 | opp_overlap 3124571 3124568 3124578, overlap 3124571 CAAGACATTAAAAAA GCAGCC ATCT GGCTGC TTTTTTATGGGTTAC TERM 3384 3124593 - 3124578 - T 100 -10.4 -5.27399 | opp_overlap 3124578 3124571, overlap 3124571 3124568 CAAGACATTAAAAAA GCAGCC ATCT GGCTGC TTTTTTATGGGTTAC Shal_2579 3125872 - 3124625 - | response regulator receiver modulated diguanylate cyclase Shal_2580 3127411 - 3126071 - | RDD domain-containing protein TERM 3385 3127292 - 3127273 - G 77 -7.2 -4.42238 | gap 1 GCACGGCAACCAAAA GGCCATCGA TCA TC-ATGGCC AAGCCTCGCTTAAGC Shal_2581 3127650 - 3128618 + | cysteine synthase A TERM 3386 3128643 - 3128660 + T 100 -11.3 -5.46657 | opp_overlap 3128643 GCGTAAAATAAAAAA CCCAAGC CTTA GCTTGGG TTTTTTATTGCCATC TERM 3387 3128660 - 3128643 - T 100 -11.3 -5.79595 | opp_overlap 3128643 GCGTAAAATAAAAAA CCCAAGC CTTA GCTTGGG TTTTTTATTGCCATC Shal_2582 3129328 - 3128651 - | TetR family transcriptional regulator TERM 3388 3129414 - 3129397 - H 70 -5.6 -4.33165 | TTAAACTTATTAAAA TCACAC TTATCC GTGTGA AGTAGGATCAAGCTC Shal_2583 3129502 - 3130575 + | O-methyltransferase, putative TERM 3389 3130666 - 3130631 - f 95 -14.2 -3.04144 | opp_overlap 3130631, overlap 3130636 TTTGCACGTTTAAGA CTTAAGCCTAAAGCGA TTAT TCGTTCTAGGCTTAAG TTTACACAGGGCGTA TERM 3390 3130631 - 3130666 + F 100 -14.2 -3.53224 | opp_overlap 3130631 3130636 TTTGCACGTTTAAGA CTTAAGCCTAAAGCGA TTAT TCGTTCTAGGCTTAAG TTTACACAGGGCGTA TERM 3391 3131572 - 3131601 + G 71 -7.3 -4.06892 | gap 1 TCGTAGGAGTATTAC TCACTCTTG-CATT GCT AATGACAAGCGTGA TTTATCTAGCCTTCT Shal_2584 3130878 - 3131864 + | C4-dicarboxylate transporter/malic acid transport protein TERM 3392 3131964 - 3131995 + F 84 -8.1 -4.66609 | CACCTCTTTCCCCAA GCCTTAAGTGTGA CGCACC TCACATTTCAGGC TTTTTGCATCACCTA TERM 3393 3133303 - 3133315 + G 79 -7.7 -4.45517 | TTAACTATGAACTTG CTGAC GAC GTCAG TTTTGTGGGTCGTTT TERM 3394 3134568 - 3134555 - g 72 -6.7 -4.1964 | TGCAACAGCGCAAAA CTTGG CGTA CCAAG AAGTCCGTGGTTTTG Shal_2585 3132372 - 3135080 + | TonB-dependent receptor plug TERM 3395 3135115 - 3135132 + T 100 -11.3 -5.24531 | opp_overlap 3135115 TACTCCACACTAAAA CGGCATC CTAG GATGCCG TTTTTTATCAGCGGT TERM 3396 3135132 - 3135115 - T 93 -11.3 -4.35116 | opp_overlap 3135115 TACTCCACACTAAAA CGGCATC CTAG GATGCCG TTTTTTATCAGCGGT Shal_2586 3136699 - 3135155 - | hypothetical protein Shal_2587 3138220 - 3136778 - | sodium/panthothenate symporter Shal_2588 3138389 - 3138213 - | hypothetical protein Shal_2589 3138844 - 3139749 + | LysR family transcriptional regulator TERM 3397 3139787 - 3139758 - T 95 -12.9 -3.724 | opp_overlap 3139764, overlap 3139764 AAGCTAGTAAGATAA GAAAAACGGGACG ATAT CGTCCCGTTTCAC ATCATTAAAATAAAA TERM 3398 3139764 - 3139781 + T 90 -12.7 -3.63895 | opp_overlap 3139758 3139764 GTAAGATAAGAAAAA CGGGACG ATAT CGTCCCG TTTCACATCATTAAA TERM 3399 3139781 - 3139764 - T 100 -12.7 -5.29716 | opp_overlap 3139764, overlap 3139758 GTAAGATAAGAAAAA CGGGACG ATAT CGTCCCG TTTCACATCATTAAA Shal_2590 3141285 - 3139804 - | formate/nitrite transporter TERM 3400 3140455 - 3140442 - G 73 -2.3 -5.13741 | CTAAGCCAACAAAAA CGCCA CCAC CGACG ATATTTCCTAAGGTC TERM 3401 3142052 - 3142062 + H 70 -3.2 -4.83615 | TATAGCCGGCAAAAT CAGG CCC TCTG TTTTTGTCACAAATA Shal_2591 3142208 - 3143740 + | hypothetical protein TERM 3402 3143777 - 3143743 - f 95 -12.2 -4.37092 | overlap 3143745 3143749 AGCTCTTTTATAAAA GAGATAGCGAGAAGAG TGA CTCTTCTCGCTGCCTA ACACTAACATCAACT TERM 3403 3143775 - 3143745 - f 100 -14.8 -3.79419 | overlap 3143743 3143749 CTCTTTTATAAAAGA GATAGCGAGAAGAG TGA CTCTTCTCGCTGCC TAACACTAACATCAA TERM 3404 3143771 - 3143749 - f 100 -16.4 -3.30825 | overlap 3143745 3143743 TTTATAAAAGAGATA GCGAGAAGAG TGA CTCTTCTCGC TGCCTAACACTAACA TERM 3405 3144063 - 3144085 + F 72 -10 -2.72344 | opp_overlap 3144068, overlap 3144068 GTTAATATACTTCCG GTAAATTGGT CTT ACCAATTTGC TAATTACCGATAGCC TERM 3406 3145555 - 3145509 - g 70 -4.7 -4.43681 | gap 2 TATCCAATACGAAAA CGATGACCTAATGCGTCCAGATT TCG AATCTG-ACG-ATTACGCTATCG CATGTTGTGTAAGCC Shal_2592 3144304 - 3146586 + | formate acetyltransferase TERM 3407 3146706 - 3146716 + G 74 -8.2 -3.96291 | GAACAGTAGATGGTC CCGG TAT CCGG TTTATCACCTTTATG TERM 3408 3146806 - 3146844 + G 72 -4.8 -4.63218 | gap 1, opp_overlap 3146807, overlap 3146807 TGGTAAAGAAATGAA AGTCGATGACTTAATGA GTCAAA TCATTA-GTTATCGACC TTTTCTTGAAGCCAG TERM 3409 3146843 - 3146807 - g 72 -6.1 -4.27211 | gap 1, opp_overlap 3146806 3146807 GGTAAAGAAATGAAA GTCGATGACTTAATGA GTCAAA TCATTA-GTTATCGAC CTTTTCTTGAAGCCA TERM 3410 3146960 - 3146941 - g 78 -6.4 -4.60924 | CAAAGCGTGTAAAAA GGAAGGTA TTCA TACCTGCC TCGATACCAATGGCT Shal_2593 3146651 - 3147391 + | pyruvate formate lyase-activating enzyme 1 TERM 3411 3147379 - 3147396 + T 79 -11.3 -2.70932 | opp_overlap 3147379 TGATATGGGAATTAA CGCGGTT TATT AACCGCG TGATTAAAGCAAGGA TERM 3412 3147396 - 3147379 - T 85 -11.3 -3.36785 | opp_overlap 3147379 TGATATGGGAATTAA CGCGGTT TATT AACCGCG TGATTAAAGCAAGGA Shal_2594 3147869 - 3147426 - | hypothetical protein TERM 3413 3147611 - 3147592 - G 72 -9.2 -3.6135 | AAAGAGAGTGGTAAA GGATGGCG AGAA CGCCAACC GAGCCAGAGTAAGCC TERM 3414 3147959 - 3147975 + H 72 -9.5 -2.92667 | opp_overlap 3147957 3147956, overlap 3147940 3147956 AGTAAGACACAACTT TGCTCTT TTA AAGAGCA TACTTTACGACTTCG Shal_2595 3148065 - 3149261 + | acetate kinase TERM 3415 3149278 - 3149306 + F 91 -13.3 -3.20747 | opp_overlap 3149280, overlap 3149269 3149280 TAAAGTATACAATTA AAGCAGCTAATAC ATG GTATTAGCTGCTG TTGGTGCAATTTAGT TERM 3416 3149280 - 3149304 + F 100 -15.9 -3.16288 | opp_overlap 3149280, overlap 3149278 3149269 AAGTATACAATTAAA GCAGCTAATAC ATG GTATTAGCTGC TGTTGGTGCAATTTA TERM 3417 3149304 - 3149280 - f 100 -15.9 -4.05848 | opp_overlap 3149280 3149278 3149269 AAGTATACAATTAAA GCAGCTAATAC ATG GTATTAGCTGC TGTTGGTGCAATTTA TERM 3418 3149327 - 3149343 + F 70 -9.5 -2.64938 | overlap 3149326 GCAATTTAGTTTTCA GTCATAC TTT GTATGAC ATTATCGAGTTTTAA TERM 3419 3149441 - 3149472 + G 82 -8 -4.59109 | GTTTAGGTATGGTAC GTGCACTTGAACGC CACG GCGTTAAAGTTCGC TTTTTCAAGCCTATC TERM 3420 3150516 - 3150504 - g 73 -4.1 -4.7871 | overlap 3150505 AAGCATCACTAAAAA CTCAC CTC GTGAA CACCGTTTATCACCA Shal_2596 3149368 - 3151515 + | phosphate acetyltransferase TERM 3421 3151557 - 3151542 - T 91 -10.4 -4.48741 | opp_overlap 3151542 TAACCCATTATAAAA GCCTGC ATCT GCAGGC TTTTTTGTATCTATC TERM 3422 3151542 - 3151557 + T 100 -10.4 -5.4492 | opp_overlap 3151542 TAACCCATTATAAAA GCCTGC ATCT GCAGGC TTTTTTGTATCTATC Shal_2597 3151937 - 3151587 - | antibiotic biosynthesis monooxygenase TERM 3423 3152326 - 3152355 + H 86 -9.5 -4.12475 | gap 1, opp_overlap 3152328, overlap 3152327 3152328 AAATAGTCTTCAACA TA-GTTGTCCACAG ATT CTGTGGATAACCTA TTTATGTCATCTCTA TERM 3424 3152327 - 3152353 + H 80 -10.2 -3.65001 | opp_overlap 3152328, overlap 3152326 3152328 AATAGTCTTCAACAT AGTTGTCCACAG ATT CTGTGGATAACC TATTTATGTCATCTC TERM 3425 3152328 - 3152352 + H 91 -13.7 -2.78278 | opp_overlap 3152328, overlap 3152327 3152326 ATAGTCTTCAACATA GTTGTCCACAG ATT CTGTGGATAAC CTATTTATGTCATCT TERM 3426 3152352 - 3152328 - H 81 -11.5 -3.07522 | opp_overlap 3152327 3152326 3152328 ATAGTCTTCAACATA GTTGTCCACAG ATT CTGTGGATAAC CTATTTATGTCATCT TERM 3427 3152763 - 3152787 + G 72 -5.7 -4.42464 | overlap 3152765 3152774 TGACAGATGTTGAGC TTGAGGTCGAT GAA GTCGACATCGA TTTCTTTCGAAAATT Shal_2598 3152438 - 3152950 + | hypothetical protein TERM 3428 3152992 - 3153021 + T 91 -10.9 -4.62872 | opp_overlap 3152997, overlap 3152997 TTAGCTAGCCCAAAC AAAAATAGCAACC TAGT GGTTGCTATTTTA TTTTTAAAGCTTAGT TERM 3429 3153016 - 3152997 - T 100 -10.8 -5.28942 | opp_overlap 3152992 3152997 TAGCCCAAACAAAAA TAGCAACC TAGT GGTTGCTA TTTTATTTTTAAAGC TERM 3430 3152997 - 3153016 + T 100 -10.8 -5.26119 | opp_overlap 3152997, overlap 3152992 TAGCCCAAACAAAAA TAGCAACC TAGT GGTTGCTA TTTTATTTTTAAAGC TERM 3431 3153506 - 3153526 + T 100 -11.2 -5.38047 | opp_overlap 3153506 TTGGCGCATAAAAAA GGCCAAAC ACTGG GTTTGGCC TTTTTTATATCAATC TERM 3432 3153526 - 3153506 - T 100 -11.2 -5.24129 | opp_overlap 3153506 TTGGCGCATAAAAAA GGCCAAAC ACTGG GTTTGGCC TTTTTTATATCAATC Shal_2599 3154456 - 3153548 - | hypothetical protein TERM 3433 3154487 - 3154507 + r 75 -10.5 -3.00215 | overlap 3154490 3154506 CTATTCTTTAACTCT GAACTCTCT AAC GGAGAGTTC TCTATCTGAGAGTTT Shal_2600 3155613 - 3154462 - | hypothetical protein Shal_2601 3155700 - 3156071 + | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase Shal_2602 3156138 - 3157043 + | hypothetical protein TERM 3434 3157114 - 3157096 - T 93 -9.6 -4.87786 | opp_overlap 3157094 TTAACTTTATAAAAA GGGATAGC TAA ACTATCCC TATACATTGGCGTTT Shal_2603 3159591 - 3157138 - | hypothetical protein TERM 3435 3157624 - 3157611 - G 70 -5.3 -4.39318 | overlap 3157615 TAATCAAATCCAAAA TCAAC CCTC GTTGA GAGTCTGCAAGGTGA Shal_2604 3160310 - 3159582 - | ABC transporter related Shal_2605 3160360 - 3160920 + | arylesterase TERM 3436 3161143 - 3161159 + G 73 -10.9 -2.71731 | opp_overlap 3161137 CACAAGTCAGCCCCA TTGCTCC AAA GGAGCAA TCGTTAAAGCCTGAA Shal_2606 3161040 - 3162164 + | hypothetical protein TERM 3437 3162202 - 3162226 + F 93 -10.8 -4.90266 | opp_overlap 3162197 3162202 CCAAATTAATTAAAA TCCCTGCCAT CATAT ATGGTAGGGA TTTTTCATTAATCAG TERM 3438 3162226 - 3162202 - f 87 -8.6 -4.5287 | opp_overlap 3162202, overlap 3162197 CCAAATTAATTAAAA TCCCTGCCAT CATAT ATGGTAGGGA TTTTTCATTAATCAG TERM 3439 3162725 - 3162692 - g 73 -10.2 -3.06969 | CAACGTAGTCGAAGA GGACACTGCCGTCG TTGCAC CGACGCCAGAGCCC GGCCCCATCTTCCCT TERM 3440 3162930 - 3162911 - g 73 -2.1 -5.09895 | overlap 3162913 CAGTTACGCAAAAAA CGTAACC ATTATG GGTTATG GCATGGAAAAGACGG Shal_2607 3162582 - 3165236 + | hypothetical protein TERM 3441 3165311 - 3165328 + F 100 -14.1 -5.252 | opp_overlap 3165311 ACTCATCAATATAAA GGCCGGG GACT CCCGGCC TTTTTTCTAACAATA TERM 3442 3165328 - 3165311 - f 100 -14.1 -4.24075 | opp_overlap 3165311 ACTCATCAATATAAA GGCCGGG GACT CCCGGCC TTTTTTCTAACAATA Shal_2608 3165364 - 3166554 + | hypothetical protein Shal_2609 3167633 - 3166590 - | AraC family transcriptional regulator Shal_2610 3168062 - 3168823 + | methyltransferase type 12 TERM 3443 3168830 - 3168814 - f 71 -5.1 -4.58395 | opp_overlap 3168817, overlap 3168817 CGTAGTCGCTAAAAA GACTCTG TAG CAGATTC TGTGTAACTACCTAA TERM 3444 3169402 - 3169388 - g 79 -4.2 -5.09895 | opp_overlap 3169390, overlap 3169390 GAGTCATTGAAAAAA CAGGTG CTA CACCTC ATTCAAACCAAGTAT TERM 3445 3169400 - 3169390 - g 71 -6.8 -4.17608 | opp_overlap 3169390, overlap 3169388 GTCATTGAAAAAACA GGTG CTA CACC TCATTCAAACCAAGT TERM 3446 3170535 - 3170514 - g 71 -3.7 -4.76963 | overlap 3170516 TGACAGAAGAGAAAA TCGTCGAGC TGAC ACTCAACAA TCCATATCGTACTTC Shal_2611 3169169 - 3170692 + | integrase catalytic region TERM 3447 3170706 - 3170688 - T 71 -6 -4.14764 | opp_overlap 3170687 CCCTAAATAAGGAAA TCTAGCAT GAT AGGCTAGA CTATATAGTGAACGA TERM 3448 3170883 - 3170873 - T 73 -8.2 -3.84246 | GTTTCAAGGATGAAA CCGC AGA GCGG CCAAGGAGGGCTTTA TERM 3449 3171139 - 3171125 - T 100 -10 -5.90981 | opp_overlap 3171125, overlap 3171138 TTAGACCAAAAAAAA CCTGCA CAA TGCAGG TTTTTCTGGTGGTAA TERM 3450 3171125 - 3171139 + T 93 -10 -4.93296 | opp_overlap 3171125 3171138 TTAGACCAAAAAAAA CCTGCA CAA TGCAGG TTTTTCTGGTGGTAA Shal_2612 3172196 - 3171168 - | putative periplasmic protease TERM 3451 3172281 - 3172300 + r 93 -7.8 -5.41746 | opp_overlap 3172283, overlap 3172283 AACATGTCAATAAAA AACCCAGC TTTC GCTGGGTC TTTTTTTAAACAATT TERM 3452 3172283 - 3172298 + r 90 -10.4 -4.34482 | opp_overlap 3172283, overlap 3172281 CATGTCAATAAAAAA CCCAGC TTTC GCTGGG TCTTTTTTTAAACAA TERM 3453 3172298 - 3172283 - R 100 -10.4 -5.46657 | opp_overlap 3172281 3172283 CATGTCAATAAAAAA CCCAGC TTTC GCTGGG TCTTTTTTTAAACAA Shal_2613 3174833 - 3172335 - | hypothetical protein TERM 3454 3174581 - 3174594 + g 72 -8.1 -3.71686 | overlap 3174562 GTGCGATAGTCGGAT CGGTG TAAT CACCG TTCTCTTCACTTGGC Shal_2614 3175095 - 3175832 + | short chain dehydrogenase TERM 3455 3175909 - 3175891 - T 100 -14.6 -5.61881 | opp_overlap 3175891 GTTGAAAAACAAAAA GGCCGCTA AGT TAGCGGCC TTTTTAATACTTATC TERM 3456 3175891 - 3175909 + T 100 -14.6 -4.8269 | opp_overlap 3175891 GTTGAAAAACAAAAA GGCCGCTA AGT TAGCGGCC TTTTTAATACTTATC Shal_2615 3176836 - 3175964 - | pseudouridine synthase Shal_2616 3177425 - 3176829 - | segregation and condensation protein B TERM 3457 3176928 - 3176914 - G 74 -8.6 -3.89346 | opp_overlap 3176913 TCGGCATCCGACAAA TGTGGA AGA TCCACA ATACTGTCTAAGCCG TERM 3458 3177102 - 3177086 - G 79 -10.9 -3.33711 | CACGTACAAACTCAA TGTCACC TCG GGTGACA GGTTGGCGGTAAGCA TERM 3459 3177142 - 3177161 + g 85 -7.2 -5.08601 | gap 1 AAGGTTTCTAACGTC GCACGCGAA TAT TTCG-GTGC TTTTTCTTGCCATAA Shal_2617 3178214 - 3177426 - | chromosome segregation and condensation protein ScpA TERM 3460 3177481 - 3177456 - G 71 -6.9 -4.1721 | ATGTATAGTTGAAAA TGGCTCAGCTT GTAC AAGCTCAACCA GCAACTCTTTGACTA TERM 3461 3177989 - 3177959 - G 76 -11.8 -2.73443 | overlap 3177958 CCATGACCAGATAAT CTGCCGCGAGCTCA ACA CGAGCTCCCTGCAG CAAATTAACGTACTC Shal_2618 3179011 - 3178391 - | Sua5/YciO/YrdC/YwlC family protein TERM 3462 3178731 - 3178718 - G 70 -2.3 -4.96501 | opp_overlap 3178718 TGCCATAAAAATAAA CGTGT AAGG ACCCG GTGTATTTTGCTTAA Shal_2619 3179886 - 3179008 - | phosphotransferase domain-containing protein TERM 3463 3180003 - 3180031 + r 79 -9 -3.85698 | opp_overlap 3180008, overlap 3180008 GCGCTAGGTGGCAGC TGAAAGCCTGAA ACAAG TTCAGGCTTTTG TTTGTGGAAACGCAA TERM 3464 3180026 - 3180008 - R 74 -8.9 -3.60098 | opp_overlap 3180008 3180003 AGGTGGCAGCTGAAA GCCTGAA ACAAG TTCAGGC TTTTGTTTGTGGAAA TERM 3465 3180008 - 3180026 + r 90 -8.9 -4.99043 | opp_overlap 3180008, overlap 3180003 AGGTGGCAGCTGAAA GCCTGAA ACAAG TTCAGGC TTTTGTTTGTGGAAA Shal_2620 3180533 - 3180096 - | TonB family protein Shal_2621 3180727 - 3181086 + | hypothetical protein TERM 3466 3181289 - 3181324 + F 72 -4.6 -4.67353 | opp_overlap 3181290, overlap 3181290 TAAGCTCGTTAACAC AGCACCAGAATCGCTA AAAC TCGCCATTCTGGAGCA TTTTTGGCTGCCTAC Shal_2622 3181560 - 3182105 + | intracellular septation protein A Shal_2623 3182105 - 3182404 + | YciI-like protein TERM 3467 3182689 - 3182677 - g 76 -9.1 -3.73647 | opp_overlap 3182676 CCTACGGATGAAGAA GACGC TCA GCGTC GTATGATCATGGGCA Shal_2624 3182422 - 3183228 + | exonuclease III TERM 3468 3183260 - 3183232 - T 80 -6.1 -4.66163 | opp_overlap 3183221 3183220 3183256, overlap 3183256 AGTTTTAGTTAAAAA CTAACGTTTTTGT GCC ACAAAAAAGCCAG CAAATTGCTGGCTTT TERM 3469 3183272 - 3183256 - T 100 -12.3 -5.24129 | opp_overlap 3183256, overlap 3183232 TTGTGCCACAAAAAA GCCAGCA AAT TGCTGGC TTTTTTTATAATTTA TERM 3470 3183256 - 3183272 + T 100 -12.3 -5.75599 | opp_overlap 3183232 3183256 TTGTGCCACAAAAAA GCCAGCA AAT TGCTGGC TTTTTTTATAATTTA Shal_2625 3184756 - 3183302 - | methyl-accepting chemotaxis sensory transducer TERM 3471 3183367 - 3183396 + g 72 -5.7 -4.54253 | gap 1, opp_overlap 3183358 3183357, overlap 3183369 3183394 ATGAACCCGCCAAAT TGGCCGCTAAGCTC ACC GAGTTTTGC-GCCG TTTCTTTAATGGTTT TERM 3472 3184240 - 3184224 - G 79 -2.3 -5.52384 | TCTTTACCAAAAAAA TTAAGTC TAT GAGTTAA GTCACCATCTGCAAG Shal_2626 3185350 - 3184862 - | hypothetical protein TERM 3473 3185574 - 3185564 - R 78 -4 -5.19916 | AAAATATTCAAAAAA CAAT ATT ATTG GTATAAATCGATAGA TERM 3474 3185641 - 3185628 - R 100 -9.5 -5.60993 | opp_overlap 3185628 TTGGCCATAAAAAAA GCGCC TTTA GGCGC TTTTTTTACCCAGTA TERM 3475 3185628 - 3185641 + r 100 -9.5 -5.41143 | opp_overlap 3185628 TTGGCCATAAAAAAA GCGCC TTTA GGCGC TTTTTTTACCCAGTA Shal_2627 3186369 - 3185725 - | beta-lactamase domain-containing protein Shal_2628 3186683 - 3187984 + | alpha/beta hydrolase fold TERM 3476 3188046 - 3188066 + F 100 -14.1 -5.86332 | ACCTGTATCACTTTC GCAAGCCTT ATT AAGGCTTGC TTTTTTTTGCCTTAA Shal_2629 3188193 - 3188387 + | hypothetical protein Shal_2630 3189452 - 3188388 - | galactose-1-phosphate uridylyltransferase Shal_2631 3189832 - 3189966 + | LysR family transcriptional regulator TERM 3477 3190002 - 3189984 - f 73 -6.7 -4.20883 | opp_overlap 3189983 3189984 3189986 GAAAAACTGTTAAAA CACTGCC TAAGC AGCAGTG ATTAATTCAGGTCAG TERM 3478 3190053 - 3190067 + F 75 -2.9 -5.2166 | AACTTAGCTTAGATG TGTAA TTTAT TTACA TTTTTTGGGTTATTC TERM 3479 3190148 - 3190126 - f 93 -13.6 -3.04242 | overlap 3190116 3190123 AATAACACCAAATTA GTGGTTAACT TTC AGTTAACCAC ACCTAATAACAGTCG Shal_2632 3190216 - 3192087 + | methyl-accepting chemotaxis sensory transducer with Cache sensor TERM 3480 3192090 - 3192074 - T 71 -6.7 -4.02534 | ATTCAAAGGTAGAAA CTTTTAT CTT ATAAAAG ATAGCTAGCGATAAA TERM 3481 3192117 - 3192155 + T 100 -8.3 -5.72622 | gap 2, opp_overlap 3192126 TAAATAATGTGCTAA GGGAAGCCATTGCGTGTGA ATA TCACA-GCAGAG-CTTCCC TTTTTTATTTGTCAA TERM 3482 3192467 - 3192439 - T 100 -14.7 -5.4588 | opp_overlap 3192439 CAAAATCATAAAAAA GCAGGTTAAGTCG ATA CCACTTAACCTGC TTTGGTTACCTAGCC TERM 3483 3192439 - 3192467 + T 100 -14.7 -3.93288 | opp_overlap 3192439 CAAAATCATAAAAAA GCAGGTTAAGTCG ATA CCACTTAACCTGC TTTGGTTACCTAGCC Shal_2634 3194543 - 3192483 - | hypothetical protein TERM 3484 3192897 - 3192884 - G 78 -6.7 -4.59773 | CTTGAGCTGCAAAAA TGCCT CTAA AGGCA TAAAGTGTCGCCCTA Shal_2635 3195635 - 3194757 - | AraC family transcriptional regulator Shal_2636 3197879 - 3195843 - | DNA topoisomerase III TERM 3485 3198084 - 3198067 - R 100 -12.7 -5.03314 | opp_overlap 3198067 GCTAGCGCTAAAAAA GCCGAGC TATT GCTCGGC TTGTTTCATGGGGCT TERM 3486 3198067 - 3198084 + r 93 -12.7 -4.0031 | opp_overlap 3198067 GCTAGCGCTAAAAAA GCCGAGC TATT GCTCGGC TTGTTTCATGGGGCT Shal_2637 3199622 - 3198108 - | amidophosphoribosyltransferase Shal_2638 3200209 - 3199721 - | colicin V production protein TERM 3487 3200264 - 3200294 + r 84 -7.7 -4.82901 | gap 1, opp_overlap 3200264 TCTATCAGAGACAGA GTTATTTCTCACGC TTTC GCG-GCGAAATAAC TTTTTCTCAGACAAA Shal_2639 3200954 - 3200325 - | sporulation domain-containing protein Shal_2640 3202212 - 3200947 - | FolC bifunctional protein TERM 3488 3201261 - 3201244 - G 70 -9.1 -3.39471 | opp_overlap 3201258 ACAAAGTGCAATTAA GCGACGC TTTG GCATCGC GGCTAAACGTGACTT Shal_2641 3203095 - 3202310 - | tRNA pseudouridine synthase A TERM 3489 3203214 - 3203252 + r 100 -16.2 -4.33928 | opp_overlap 3203216 3203226, overlap 3203216 3203225 CTCACGGCAAACGAT AAGTATAAAAAAGGCGCC AAA GGCGCCGTTTTTATACTG TTTATATTTAAACTA TERM 3490 3203216 - 3203250 + r 100 -18.8 -3.76586 | opp_overlap 3203216 3203226, overlap 3203214 3203225 CACGGCAAACGATAA GTATAAAAAAGGCGCC AAA GGCGCCGTTTTTATAC TGTTTATATTTAAAC TERM 3491 3203250 - 3203216 - R 100 -18.8 -3.60865 | opp_overlap 3203214 3203216 3203225, overlap 3203226 CACGGCAAACGATAA GTATAAAAAAGGCGCC AAA GGCGCCGTTTTTATAC TGTTTATATTTAAAC TERM 3492 3203225 - 3203241 + r 90 -9.3 -5.00846 | opp_overlap 3203216 3203226, overlap 3203216 3203214 CGATAAGTATAAAAA AGGCGCC AAA GGCGCCG TTTTTATACTGTTTA TERM 3493 3203240 - 3203226 - R 100 -12.8 -5.39755 | opp_overlap 3203225 3203216 3203214, overlap 3203216 GATAAGTATAAAAAA GGCGCC AAA GGCGCC GTTTTTATACTGTTT Shal_2642 3206358 - 3203260 - | hypothetical protein TERM 3494 3204717 - 3204743 + g 83 -10.2 -3.72893 | opp_overlap 3204707, overlap 3204708 3204720 3204723 TATCATCTTCAGCTG CAACAGCTGAAC TCA GTTCTGTTGTTG TTTCGTCAAAACCTG TERM 3495 3205097 - 3205116 + g 72 -9.4 -3.54902 | opp_overlap 3205094, overlap 3205094 AACGAATCAAGATCG TCTTCATC AGAT GATGAAGA TTCATTATTAGCTGA TERM 3496 3206235 - 3206258 + g 76 -5.2 -4.7497 | GACGAATGCTTTGCT TTACTTGGCC ATCT GGCCCTGTAA TTTTTAATGGCTCAG TERM 3497 3206509 - 3206481 - R 89 -11.8 -3.70689 | opp_overlap 3206481 3206487, overlap 3206487 CACAACTTTAAAACA TAAAAAGCCCGC ATAAG GCGGGCTTTTTC TTCAGTCAAAGCATA TERM 3498 3206481 - 3206509 + r 82 -11.8 -3.05596 | opp_overlap 3206481 3206487, overlap 3206487 CACAACTTTAAAACA TAAAAAGCCCGC ATAAG GCGGGCTTTTTC TTCAGTCAAAGCATA TERM 3499 3206487 - 3206503 + r 93 -10.8 -5.10461 | opp_overlap 3206487 3206481, overlap 3206481 TTTAAAACATAAAAA GCCCGC ATAAG GCGGGC TTTTTCTTCAGTCAA TERM 3500 3206503 - 3206487 - R 100 -10.8 -5.28983 | opp_overlap 3206481 3206487, overlap 3206481 TTTAAAACATAAAAA GCCCGC ATAAG GCGGGC TTTTTCTTCAGTCAA Shal_2643 3207554 - 3206538 - | aspartate-semialdehyde dehydrogenase Shal_2644 3208687 - 3207557 - | D-isomer specific 2-hydroxyacid dehydrogenase catalytic region TERM 3501 3207642 - 3207659 + g 85 -5.5 -5.34555 | TTTAATGCACTAAAT TCGCGCC GATG GGTGTGA TTTTTTCTCATATGA Shal_2645 3209024 - 3209620 + | hypothetical protein TERM 3502 3209954 - 3209943 - T 70 -3 -5.01497 | ATGATTAGATAAAAA TTAG GTTG CTAA ATCCCACTAATCAAG TERM 3503 3210492 - 3210458 - T 79 -10.1 -3.61517 | opp_overlap 3210464, overlap 3210459 3210464 AGCTTGGTGCAAGAA TTAAAAGCCAGTAGC AGTTA GCGACTGGCTTTTAG AGCAAACGTTTAGTG TERM 3504 3210491 - 3210459 - T 91 -13.6 -2.76696 | opp_overlap 3210464, overlap 3210458 3210464 GCTTGGTGCAAGAAT TAAAAGCCAGTAGC AGTTA GCGACTGGCTTTTA GAGCAAACGTTTAGT TERM 3505 3210464 - 3210486 + T 83 -9.1 -4.07687 | opp_overlap 3210459 3210458 3210464 GTGCAAGAATTAAAA GCCAGTAGC AGTTA GCGACTGGC TTTTAGAGCAAACGT TERM 3506 3210486 - 3210464 - T 88 -9.1 -4.56133 | opp_overlap 3210464, overlap 3210459 3210458 GTGCAAGAATTAAAA GCCAGTAGC AGTTA GCGACTGGC TTTTAGAGCAAACGT Shal_2647 3211469 - 3210546 - | ornithine cyclodeaminase Shal_2648 3212637 - 3211471 - | hypothetical protein TERM 3507 3212775 - 3212786 + H 76 -4.4 -5.13343 | GTAGAACAAGAGTAT CCAA GAAG TTGG TTTTGTTTTACATTA Shal_2649 3212836 - 3213774 + | LysR family transcriptional regulator TERM 3508 3214245 - 3214235 - g 73 -4 -4.85782 | TTTTCGAAAAAGAAA GTAA GCA TTAC GTGACATTATTTGTT Shal_2650 3214000 - 3214419 + | NUDIX hydrolase Shal_2651 3216280 - 3214556 - | diguanylate cyclase/phosphodiesterase Shal_2652 3217289 - 3216285 - | putative anti-sigma regulatory factor, serine/threonine protein kinase Shal_2653 3217717 - 3217289 - | anti-sigma-factor antagonist TERM 3509 3218328 - 3218302 - R 100 -16 -5.71712 | opp_overlap 3218302 CTGCATATAAAAAAA GGAAGCCTAGAT ATT ATCCAGGCTTCC TTTTTAAAGAAGTTT TERM 3510 3218302 - 3218328 + r 100 -13.8 -4.58685 | opp_overlap 3218302 CTGCATATAAAAAAA GGAAGCCTAGAT ATT ATCCAGGCTTCC TTTTTAAAGAAGTTT Shal_2654 3219633 - 3218359 - | Beta-ketoacyl synthase Shal_2655 3219801 - 3221711 + | FAD dependent oxidoreductase TERM 3511 3221808 - 3221793 - T 90 -9 -4.89567 | opp_overlap 3221793 GCCGAAAATAGAAAA GCCACT CTAC AGTGGC TTCTAAAACAACAAA TERM 3512 3221793 - 3221808 + T 72 -9 -3.28712 | opp_overlap 3221793 GCCGAAAATAGAAAA GCCACT CTAC AGTGGC TTCTAAAACAACAAA Shal_2656 3222350 - 3221826 - | tRNA/rRNA methyltransferase (SpoU) Shal_2657 3222690 - 3222421 - | YfcL protein Shal_2658 3223965 - 3222844 - | ATP-NAD/AcoX kinase Shal_2659 3225163 - 3224009 - | major facilitator transporter TERM 3513 3224072 - 3224057 - G 76 -4 -5.05601 | gap 1, overlap 3224059 TAGCATAGATAAAAA TG-CGCA GCC TGCGGCA AAGATCCAAGTGGAC TERM 3514 3224506 - 3224496 - G 72 -5.4 -4.38203 | TACAGAACGAAGAAA CCAT AAA ATGG CCCAGCACTCATCTG TERM 3515 3225150 - 3225114 - G 74 -5.9 -4.5815 | gap 1, opp_overlap 3225116 3225117, overlap 3225116 3225117 AAGAAAAAGAAATAA CATGCACAGAGCCAGC GCAGTT GCTG-CTCTGTGCTTT TGGGTTGAAACATTA TERM 3516 3225148 - 3225116 - G 74 -8.5 -3.84447 | gap 1, opp_overlap 3225116 3225117, overlap 3225114 3225117 GAAAAAGAAATAACA TGCACAGAGCCAGC GCAGTT GCTG-CTCTGTGCT TTTGGGTTGAAACAT TERM 3517 3225117 - 3225147 + g 95 -12.7 -4.27316 | gap 1, opp_overlap 3225117 3225116 3225114, overlap 3225116 AAAAAGAAATAACAT GCACAGAGCCAGCG CAGT TGCTG-CTCTGTGC TTTTGGGTTGAAACA TERM 3518 3225147 - 3225117 - G 77 -12 -2.88228 | gap 1, opp_overlap 3225116 3225117, overlap 3225116 3225114 AAAAAGAAATAACAT GCACAGAGCCAGC GCAGTT GCTG-CTCTGTGC TTTTGGGTTGAAACA Shal_2660 3226257 - 3225163 - | chorismate synthase TERM 3519 3225480 - 3225492 + g 71 -3.3 -4.8622 | GTGACATCAAGTCTC GGTGC TCT GAACC TTTTTGATTAACCAC TERM 3520 3226398 - 3226377 - R 93 -11.5 -4.431 | opp_overlap 3226370, overlap 3226378 TACTGATTGATAAAA CGCCGCAGG CAAG CCTGCGGCT AGAATCTATTATTCA TERM 3521 3226397 - 3226378 - R 100 -15 -3.25378 | opp_overlap 3226370, overlap 3226377 ACTGATTGATAAAAC GCCGCAGG CAAG CCTGCGGC TAGAATCTATTATTC Shal_2661 3227351 - 3226407 - | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase Shal_2662 3227431 - 3227961 + | hypothetical protein TERM 3522 3228039 - 3227981 - T 91 -13.8 -2.86736 | gap 3, opp_overlap 3227994, overlap 3227994 CAAATTAATAAACAT GAG-ACAATAAAAAGTGAGTC-TTCTACA TACA CG-AGAATGACTCACTTTTTATTGTGCTC GACGGGTTCTGTTCG TERM 3523 3227994 - 3228025 + T 78 -3.9 -5.22006 | gap 1, opp_overlap 3227981 3227994 ATGAGACAATAAAAA GTGAGTC-TTCT ACATACACG AGAATGACTCAC TTTTTATTGTGCTCG TERM 3524 3228025 - 3227994 - T 78 -3.9 -5.25699 | opp_overlap 3227994, overlap 3227981 ATGAGACAATAAAAA GTGAGTC-TTCTACA TACA CG-AGAATGACTCAC TTTTTATTGTGCTCG Shal_2663 3228527 - 3228057 - | phosphohistidine phosphatase, SixA Shal_2664 3228884 - 3231673 + | peptidase M16 domain-containing protein TERM 3525 3232793 - 3232781 - g 71 -3.4 -4.79657 | ACAACATGAATAAAA CCAA GCTAG TTGG CGTACTTAATAATCC TERM 3526 3235400 - 3235422 + G 87 -9.8 -4.3586 | opp_overlap 3235372 3235400 3235399 TGTATCATGCAAAAT CTGCTGGCGG CAA CCGCTATCAG TTTTACTCTGAATCG TERM 3527 3235460 - 3235449 - g 85 -5.8 -5.27938 | ATCGTTAAACAAAAA TGCC ATCA GGCA ACTAGAGGTTGAAAA TERM 3528 3235705 - 3235681 - g 72 -2.7 -5.00616 | GTGGTGCTTAAAAAA GCCTGCTTCGC TGC GCAAAAGTGGC GTTCGCAAGGTTTAT Shal_2665 3231979 - 3236265 + | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 3529 3236291 - 3236278 - f 74 -4.5 -4.96427 | overlap 3236279 TAATAACAAAACAAA CGCCA ACAT TGGCA CAACAACTGCAGTTA Shal_2666 3236364 - 3237560 + | hypothetical protein Shal_2668 3237724 - 3237840 + | hypothetical protein TERM 3530 3237906 - 3237943 + T 100 -15.9 -4.36914 | opp_overlap 3237908 3237911 3237918, overlap 3237908 3237918 TAGTGCATTAGTTCA AATAACAAAAAAGGAGC CTAC GCTCCTTTTTTGTTATC TTTTATAAGAGAAAC TERM 3531 3237941 - 3237908 - T 100 -18.5 -3.62096 | opp_overlap 3237906 3237908 3237918, overlap 3237911 3237918 GTGCATTAGTTCAAA TAACAAAAAAGGAGC CTAC GCTCCTTTTTTGTTA TCTTTTATAAGAGAA TERM 3532 3237908 - 3237941 + T 100 -18.5 -3.79419 | opp_overlap 3237908 3237911 3237918, overlap 3237906 3237918 GTGCATTAGTTCAAA TAACAAAAAAGGAGC CTAC GCTCCTTTTTTGTTA TCTTTTATAAGAGAA TERM 3533 3237938 - 3237911 - T 100 -15.8 -3.94634 | opp_overlap 3237908 3237906 3237918, overlap 3237908 3237918 CATTAGTTCAAATAA CAAAAAAGGAGC CTAC GCTCCTTTTTTG TTATCTTTTATAAGA TERM 3534 3237918 - 3237931 + T 100 -8.1 -5.66338 | opp_overlap 3237918 3237911 3237908, overlap 3237908 3237906 TCAAATAACAAAAAA GGAGC CTAC GCTCC TTTTTTGTTATCTTT TERM 3535 3237931 - 3237918 - T 100 -8.1 -5.72254 | opp_overlap 3237908 3237906 3237918, overlap 3237911 3237908 TCAAATAACAAAAAA GGAGC CTAC GCTCC TTTTTTGTTATCTTT Shal_2669 3238176 - 3237976 - | hypothetical protein TERM 3536 3238321 - 3238354 + r 100 -12.6 -4.84918 | opp_overlap 3238322 3238329, overlap 3238322 3238325 AATAGCCTAGAACAA ATAACAAAGCGGCA ACATGC TGCCGCTTTGTTAA TTTTCTCTTTGTGAA TERM 3537 3238322 - 3238353 + r 100 -16.1 -3.49866 | opp_overlap 3238322 3238329, overlap 3238321 3238325 ATAGCCTAGAACAAA TAACAAAGCGGCA ACATGC TGCCGCTTTGTTA ATTTTCTCTTTGTGA TERM 3538 3238353 - 3238322 - R 100 -16.8 -4.32579 | opp_overlap 3238321 3238322 3238325, overlap 3238329 ATAGCCTAGAACAAA TAACAAAGCGGCAA CATG CTGCCGCTTTGTTA ATTTTCTCTTTGTGA TERM 3539 3238325 - 3238350 + r 100 -13.4 -3.84852 | opp_overlap 3238322 3238329, overlap 3238322 3238321 GCCTAGAACAAATAA CAAAGCGGCA ACATGC TGCCGCTTTG TTAATTTTCTCTTTG TERM 3540 3238346 - 3238329 - R 89 -9.1 -4.69324 | opp_overlap 3238325 3238322 3238321, overlap 3238322 AGAACAAATAACAAA GCGGCAA CATG CTGCCGC TTTGTTAATTTTCTC Shal_2670 3240556 - 3238430 - | multifunctional fatty acid oxidation complex subunit alpha Shal_2671 3241871 - 3240561 - | 3-ketoacyl-CoA thiolase Shal_2672 3242288 - 3243244 + | ATPase Shal_2673 3243244 - 3244173 + | hypothetical protein Shal_2674 3244174 - 3244692 + | hypothetical protein Shal_2675 3244686 - 3245723 + | von Willebrand factor type A TERM 3541 3247101 - 3247081 - g 71 -3.9 -4.79657 | overlap 3247082 ACAAGAGCAACAAAA CGCTGACCA GTC TGAACAGCA ATCAAGTGATGAGCA Shal_2676 3245726 - 3247744 + | TPR repeat-containing protein TERM 3542 3249317 - 3249304 - g 79 -8.1 -4.26076 | TTAGCCGCAGTAAAA GCAGC AAAA GCTGC TCACTCTCAAGCTAA Shal_2677 3247738 - 3249366 + | hypothetical protein TERM 3543 3249458 - 3249477 + F 100 -7.9 -5.79595 | opp_overlap 3249458 ACAGACTCAACCAAA GACGCTT CTATGT AAGCGTC TTTTTTGTTTTCAGG TERM 3544 3249477 - 3249458 - f 73 -7.9 -3.95148 | opp_overlap 3249458 ACAGACTCAACCAAA GACGCTT CTATGT AAGCGTC TTTTTTGTTTTCAGG Shal_2678 3249951 - 3250514 + | RNA polymerase sigma factor Shal_2679 3250507 - 3251211 + | hypothetical protein TERM 3545 3251250 - 3251224 - f 87 -12.4 -3.38564 | opp_overlap 3251228, overlap 3251213 3251228 TAAATCTATTCACAA CCAATGATGTTC AAC GAGCATCATTGG TTAGAACGTCATCAC TERM 3546 3251351 - 3251339 - f 75 -5.5 -4.66746 | TAGAAAAGAAAAGAA GCGTG AAC CACAC ATGACAATTGAATTA TERM 3547 3251789 - 3251799 + G 82 -6.8 -4.86731 | TTCATCAGGCATGGT TGGC GGC GCCA TTTTATTTGAAAAAG TERM 3548 3251898 - 3251912 + G 72 -5 -4.57569 | GGTGGCTTCTTTGCC GTTAGT TGG ACTGAC TTTTTCCAGGGCTGC Shal_2680 3251352 - 3252803 + | sodium/proline symporter TERM 3549 3252854 - 3252827 - f 75 -10 -3.18945 | opp_overlap 3252833, overlap 3252833 GCGAGCGACAACAGA TAAAAAGCGTAC ATTT GTACGCTTTTTT TATTTTTATCAATAA TERM 3550 3252833 - 3252848 + F 100 -9 -6.23317 | opp_overlap 3252827 3252833 GACAACAGATAAAAA GCGTAC ATTT GTACGC TTTTTTTATTTTTAT TERM 3551 3252848 - 3252833 - f 90 -9 -5.12474 | opp_overlap 3252833, overlap 3252827 GACAACAGATAAAAA GCGTAC ATTT GTACGC TTTTTTTATTTTTAT Shal_2681 3253073 - 3254452 + | membrane protein involved in aromatic hydrocarbon degradation TERM 3552 3254491 - 3254508 + F 100 -11.3 -5.94214 | opp_overlap 3254491 TGTTTTGTTCTAAAA GCCGCAT ATTA ATGCGGC TTTTTTTATTGTATT TERM 3553 3254508 - 3254491 - f 90 -11.3 -4.07568 | opp_overlap 3254491 TGTTTTGTTCTAAAA GCCGCAT ATTA ATGCGGC TTTTTTTATTGTATT Shal_2682 3254638 - 3255354 + | hypothetical protein TERM 3554 3255379 - 3255410 + F 100 -16.2 -4.12188 | opp_overlap 3255379 3255385, overlap 3255385 GTTGGGCTGGATAAA TATAAAGGCTTAAC TTTG GTTAAGCCTTTATA TTTTAAGCCTCATCA TERM 3555 3255410 - 3255379 - f 100 -16.2 -3.85698 | opp_overlap 3255379 3255385, overlap 3255385 GTTGGGCTGGATAAA TATAAAGGCTTAAC TTTG GTTAAGCCTTTATA TTTTAAGCCTCATCA TERM 3556 3255404 - 3255385 - f 91 -10.8 -4.40003 | opp_overlap 3255385 3255379, overlap 3255379 CTGGATAAATATAAA GGCTTAAC TTTG GTTAAGCC TTTATATTTTAAGCC TERM 3557 3255385 - 3255404 + F 91 -10.8 -4.45168 | opp_overlap 3255379 3255385, overlap 3255379 CTGGATAAATATAAA GGCTTAAC TTTG GTTAAGCC TTTATATTTTAAGCC Shal_2683 3255554 - 3256591 + | RND family efflux transporter MFP subunit Shal_2684 3256627 - 3259836 + | acriflavin resistance protein TERM 3558 3259847 - 3259875 + F 70 -9.6 -2.57683 | overlap 3259846 AGTAATTCAACCTCA CGTATTGGCGCT CAAAA GGCGCCAATACC CTTATCAAAACCTAT Shal_2685 3259923 - 3260141 + | hypothetical protein Shal_2686 3260166 - 3260561 + | rhodanese domain-containing protein TERM 3559 3260592 - 3260609 + F 95 -11.3 -5.09204 | opp_overlap 3260590 3260594 ATGACTTTTATAAGT GAGAGCC TTAT GGCTCTC TTTTTATTGCAATAT Shal_2687 3260705 - 3261022 + | hypothetical protein Shal_2688 3261901 - 3261095 - | hypothetical protein Shal_2689 3262629 - 3262000 - | GTP cyclohydrolase II Shal_2690 3263200 - 3262844 - | hypothetical protein TERM 3560 3263248 - 3263269 + r 82 -8.7 -4.24123 | opp_overlap 3263248 GTTTAGAAACAAAAA CAGCCTCAG TTAA CTGACGCTG TTTTGCCATTATTGC TERM 3561 3263269 - 3263248 - R 95 -8.7 -5.38054 | opp_overlap 3263248 GTTTAGAAACAAAAA CAGCCTCAG TTAA CTGACGCTG TTTTGCCATTATTGC Shal_2691 3263797 - 3263333 - | anaerobic ribonucleoside-triphosphate reductase activating protein TERM 3562 3263830 - 3263847 + r 90 -11.3 -4.01603 | opp_overlap 3263830 TTGGGAGATAAAAAA GGTGCTG ATAT CAGCACC TTTCATATTTCAGTC TERM 3563 3263847 - 3263830 - R 100 -11.3 -5.36441 | opp_overlap 3263830 TTGGGAGATAAAAAA GGTGCTG ATAT CAGCACC TTTCATATTTCAGTC Shal_2692 3266017 - 3263900 - | anaerobic ribonucleoside triphosphate reductase TERM 3564 3266070 - 3266049 - R 70 -8.1 -3.72695 | opp_overlap 3266049 AGCTCGCTCATCAAA GTAACACTA TATA TAGTGCTAC TTTTTCAATAAATCA TERM 3565 3266049 - 3266070 + r 75 -5.9 -4.67353 | opp_overlap 3266049 AGCTCGCTCATCAAA GTAACACTA TATA TAGTGCTAC TTTTTCAATAAATCA Shal_2693 3266958 - 3266272 - | hypothetical protein TERM 3566 3266776 - 3266797 + g 79 -4.5 -5.24129 | TCTTTCTGCACGGTC TGATAACAC AAGC GTATTATCA TTTTTTGTCAGCGAC TERM 3567 3267069 - 3267093 + r 81 -11.6 -3.01712 | opp_overlap 3267073, overlap 3267073 AACTCTTGAGTTATA CCAATCACAT TAAAT ATGTGATTGG TATTAACGCCAAGCA TERM 3568 3267192 - 3267180 - R 82 -7.7 -4.58283 | overlap 3267182 TAACTTGCTTAAAAA GAGCT TTC AGCTC AATGAGCAGTAAAAC TERM 3569 3267266 - 3267252 - R 93 -8.5 -5.28826 | opp_overlap 3267252 3267250 AAAGGTCACAAAAAA GGCGC GATTA GCGCC TCTTTATTCAAAAAC TERM 3570 3267252 - 3267266 + r 73 -8.5 -3.6761 | opp_overlap 3267252, overlap 3267250 AAAGGTCACAAAAAA GGCGC GATTA GCGCC TCTTTATTCAAAAAC Shal_2694 3268276 - 3267299 - | patatin TERM 3571 3269821 - 3269811 - g 73 -4.6 -4.89966 | overlap 3269812 ACAGCCAAAAAGAAA GCAG CGA CCGC TAAAAGAAAATCGAC Shal_2695 3268572 - 3269948 + | DEAD/DEAH box helicase domain-containing protein TERM 3572 3270048 - 3270017 - f 93 -10.2 -4.79174 | opp_overlap 3270020, overlap 3270020 ATTTAAGCAAGAAAA CAAGCCGCATTGAT GATT ATCACTGCGGCTTT TTTTATTCAAACATT TERM 3573 3270045 - 3270020 - f 95 -11.9 -4.48997 | opp_overlap 3270020, overlap 3270017 TAAGCAAGAAAACAA GCCGCATTGAT GATT ATCACTGCGGC TTTTTTTATTCAAAC TERM 3574 3270020 - 3270045 + F 100 -11.9 -5.7946 | opp_overlap 3270020 3270017 TAAGCAAGAAAACAA GCCGCATTGAT GATT ATCACTGCGGC TTTTTTTATTCAAAC TERM 3575 3270111 - 3270097 - f 75 -5.7 -4.67353 | TTATTGATTTAAAAA TAGCG TCTAT CGCTA CTCCTCGCTGCAAAG TERM 3576 3270226 - 3270242 + F 82 -3.8 -5.49809 | CGAGAAATAGCGCTA CAATAT CCGCA ATATTG TTTTTTTAAGGTTTA Shal_2696 3270260 - 3270703 + | hypothetical protein TERM 3577 3270727 - 3270745 + F 95 -11.6 -5.05601 | opp_overlap 3270726 3270722 3270720 3270727 ACAGTAAATACTAAT GGGCGCAC TCA GGGCGCCC TTTTTATATATCCTC TERM 3578 3270745 - 3270727 - f 79 -11.6 -2.68881 | opp_overlap 3270727, overlap 3270726 3270722 3270720 ACAGTAAATACTAAT GGGCGCAC TCA GGGCGCCC TTTTTATATATCCTC Shal_2697 3270788 - 3271294 + | hypothetical protein Shal_2698 3271436 - 3271837 + | hypothetical protein TERM 3579 3272061 - 3272079 + F 76 -11 -2.70946 | opp_overlap 3272061, overlap 3272060 3272057 CCTTATGTGCAGACA CTGCAGTG AGA CGCTGCAG CTCTTTATGAAAGAC Shal_2699 3272550 - 3273926 + | hypothetical protein TERM 3580 3274709 - 3274695 - g 78 -6.4 -4.59773 | TTGTATTTGGAAAAA GTGGTC TCA AACCAC TGGTGGTTCATGTGC Shal_2700 3273923 - 3274939 + | hypothetical protein TERM 3581 3275021 - 3274988 - f 100 -14.7 -4.07568 | opp_overlap 3274996, overlap 3274990 3274996 CGTTGGTGCTTAAAA CACAAAAACGCCACC AACC GGTGGCGTTTTTGCT CCTACCCATTTATCA TERM 3582 3275019 - 3274990 - f 100 -19.5 -3.63744 | opp_overlap 3274996, overlap 3274988 3274996 TTGGTGCTTAAAACA CAAAAACGCCACC AACC GGTGGCGTTTTTG CTCCTACCCATTTAT TERM 3583 3274996 - 3275013 + F 100 -12.7 -4.77036 | opp_overlap 3274990 3274988 3274996 CTTAAAACACAAAAA CGCCACC AACC GGTGGCG TTTTTGCTCCTACCC TERM 3584 3275013 - 3274996 - f 100 -12.7 -5.28983 | opp_overlap 3274996, overlap 3274990 3274988 CTTAAAACACAAAAA CGCCACC AACC GGTGGCG TTTTTGCTCCTACCC TERM 3585 3275869 - 3275885 + G 71 -10.1 -3.1485 | overlap 3275860 ATACTGGGCTACTTC GAGTGCC TTT GGCGCTC TTCAATCCTTGGTTG Shal_2701 3275294 - 3275953 + | 60 kDa inner membrane insertion protein TERM 3586 3276314 - 3276283 - T 100 -17.6 -3.40522 | opp_overlap 3276283 3276291, overlap 3276291 ACCTTCTTATCATAA GTATAAAAGCCATC CTAA GATGGCTTTTATAC TTTCAGTTTTAGAAA TERM 3587 3276283 - 3276314 + T 100 -17.6 -3.92659 | opp_overlap 3276283 3276291, overlap 3276291 ACCTTCTTATCATAA GTATAAAAGCCATC CTAA GATGGCTTTTATAC TTTCAGTTTTAGAAA TERM 3588 3276306 - 3276291 - T 88 -9 -4.59069 | opp_overlap 3276283 3276291, overlap 3276283 ATCATAAGTATAAAA GCCATC CTAA GATGGC TTTTATACTTTCAGT TERM 3589 3276291 - 3276306 + T 88 -9 -4.62168 | opp_overlap 3276291 3276283, overlap 3276283 ATCATAAGTATAAAA GCCATC CTAA GATGGC TTTTATACTTTCAGT Shal_2702 3277636 - 3276380 - | peptidase M23B TERM 3590 3277162 - 3277147 - G 73 -10.4 -2.94747 | opp_overlap 3277145 GGATCTGACCAGAGA TGGCGC GATC GCGCCA AATACCTTCGATGTT Shal_2703 3280953 - 3277897 - | SMC domain-containing protein TERM 3591 3279218 - 3279230 + g 85 -3.3 -5.52023 | overlap 3279219 TCAATCGATTGTTGA CTGGC ATC GCCAA TTTTTTGTTGATACT Shal_2704 3282095 - 3280950 - | nuclease SbcCD, D subunit TERM 3592 3280989 - 3281004 + g 71 -6.8 -4.13728 | TAGCTCGTCGATTGC GCTGGT CATT GCCAGC TTTTGCGCCTCTGTC Shal_2705 3282450 - 3283694 + | valine--pyruvate transaminase TERM 3593 3283887 - 3283868 - T 100 -15 -5.53079 | opp_overlap 3283868 3283860 AAAATACATAAAAAA GCCCCCTC AAAA GAGGGGGC TTACTCACTTATCTA TERM 3594 3283868 - 3283887 + T 100 -15 -3.24425 | opp_overlap 3283868, overlap 3283860 AAAATACATAAAAAA GCCCCCTC AAAA GAGGGGGC TTACTCACTTATCTA Shal_2706 3285086 - 3283908 - | hypothetical protein TERM 3595 3284108 - 3284120 + g 74 -5.5 -4.5954 | TAAAATTTACAATGC GAGGC GAT GCTTC TTTTGTCTGCTGTGA TERM 3596 3285140 - 3285123 - R 100 -6.3 -5.94713 | opp_overlap 3285123 ATTGGATAAAAAAAA TCGACCT CTAA AAGTCGA TTTAAGCTGGCCTAT TERM 3597 3285456 - 3285471 + r 78 -7.6 -4.37506 | ATTAGATGGGTTTAA GCGATT TTCA AATCGC TTTGTCTTTCATAAT Shal_2707 3286220 - 3285666 - | hypothetical protein TERM 3598 3285716 - 3285706 - G 74 -6.8 -4.30014 | TGCAGCAATGCAAAA GCTC CAT GAGC AAAGAAATAAGCCTG Shal_2708 3286801 - 3288315 + | amino acid permease-associated region Shal_2709 3288335 - 3289270 + | glutaminase TERM 3599 3289331 - 3289288 - T 85 -11.2 -3.27902 | gap 1, opp_overlap 3289293 3289296 3289303, overlap 3289286 3289297 3289299 3289301 GTATTGAACAATAGA GATATTACACAGAGAGTGCCT CAC AGGCACTCTCTG-ATCATTTC AAATACACCTCTAAT TERM 3600 3289293 - 3289327 + T 79 -10 -3.60296 | opp_overlap 3289288 3289286 3289297 3289299 3289301, overlap 3289296 3289303 GAACAATAGAGATAT TACACAGAGAGTGCCT CAC AGGCACTCTCTGATCA TTTCAAATACACCTC TERM 3601 3289296 - 3289324 + T 100 -16.1 -2.92613 | opp_overlap 3289288 3289286 3289297 3289299 3289301, overlap 3289293 3289303 CAATAGAGATATTAC ACAGAGAGTGCCT CAC AGGCACTCTCTGA TCATTTCAAATACAC TERM 3602 3289323 - 3289297 - T 100 -19.6 -2.91913 | opp_overlap 3289296 3289293 3289303, overlap 3289288 3289286 3289299 3289301 AATAGAGATATTACA CAGAGAGTGCCT CAC AGGCACTCTCTG ATCATTTCAAATACA TERM 3603 3289321 - 3289299 - T 100 -16.4 -3.00259 | opp_overlap 3289296 3289293 3289303, overlap 3289297 3289288 3289286 3289301 TAGAGATATTACACA GAGAGTGCCT CAC AGGCACTCTC TGATCATTTCAAATA TERM 3604 3289319 - 3289301 - T 91 -13.2 -3.04983 | opp_overlap 3289296 3289293 3289303, overlap 3289299 3289297 3289288 3289286 GAGATATTACACAGA GAGTGCCT CAC AGGCACTC TCTGATCATTTCAAA TERM 3605 3289303 - 3289317 + T 75 -10 -2.99473 | opp_overlap 3289301 3289299 3289297 3289288 3289286, overlap 3289296 3289293 GATATTACACAGAGA GTGCCT CAC AGGCAC TCTCTGATCATTTCA Shal_2710 3290326 - 3289469 - | Beta-lactamase Shal_2711 3291133 - 3290354 - | hypothetical protein TERM 3606 3290496 - 3290471 - G 79 -12.7 -2.88212 | gap 1, overlap 3290476 AAGCACTAGACGAGA GCCAAGCG-TTG CAC CAATCGCTTGGC CGATAAGCATCACAC TERM 3607 3291951 - 3291970 + G 91 -6.4 -5.45652 | overlap 3291949 3291942 CGGCCAGCGGTATGG GCGTGG CGCTTATT CCACGC TTTTTTATTGAAGAT TERM 3608 3292067 - 3292116 + G 71 -10.8 -2.61718 | opp_overlap 3292067, overlap 3292066 3292065 TTATTAACGCCAAAA TCGAGTAACCTGCCGTTAAAAG TGCAAT CTTTTATCGACTGGCTACTCGA ACTTTTTAGCCCTTA TERM 3609 3292116 - 3292067 - g 100 -15.2 -4.20696 | opp_overlap 3292067 3292066 3292065 TTATTAACGCCAAAA TCGAGTAACCTGCCGTTAAAAG TGCAAT CTTTTATCGACTGGCTACTCGA ACTTTTTAGCCCTTA Shal_2712 3291254 - 3292144 + | LysR family transcriptional regulator Shal_2713 3294160 - 3292187 - | serine/threonine protein kinase TERM 3610 3292296 - 3292259 - G 95 -12.9 -3.78067 | opp_overlap 3292267 3292288, overlap 3292288 AACATTCAAGTCAAA GTTAAGCACTTTATGGC AAAC GTCATAAAGTGCTTCAC CGAACCACTCTCTAT TERM 3611 3294247 - 3294230 - R 100 -9.9 -5.29782 | opp_overlap 3294230 TATAGGCACAAAAAA GCCACTT ATAT AAGTGGC TTATTTTAAAAATGA TERM 3612 3294230 - 3294247 + r 89 -9.9 -4.18506 | opp_overlap 3294230 TATAGGCACAAAAAA GCCACTT ATAT AAGTGGC TTATTTTAAAAATGA Shal_2714 3294663 - 3294277 - | hypothetical protein Shal_2715 3294913 - 3294683 - | RNA-binding S4 domain-containing protein Shal_2716 3295525 - 3294992 - | GCN5-related N-acetyltransferase Shal_2717 3295837 - 3295559 - | PpiC-type peptidyl-prolyl cis-trans isomerase Shal_2718 3297802 - 3295970 - | hypothetical protein TERM 3613 3298117 - 3298133 + G 86 -10.9 -3.75897 | opp_overlap 3298131, overlap 3298131 CCGATCTACTCGCTA GGCTTGA TAA TCAAGCC TTTGCATTAGGCATT Shal_2719 3297879 - 3298385 + | diguanylate cyclase TERM 3614 3298439 - 3298424 - T 100 -10.4 -5.47431 | opp_overlap 3298424 TTAAGACATAAAAAA GCCCCT TAAA AGGGGC TTTTAAACAACTCAT TERM 3615 3298424 - 3298439 + T 86 -10.4 -4.08945 | opp_overlap 3298424 TTAAGACATAAAAAA GCCCCT TAAA AGGGGC TTTTAAACAACTCAT Shal_2720 3299706 - 3298459 - | tetratricopeptide domain-containing protein Shal_2721 3300329 - 3299709 - | TonB family protein Shal_2722 3300735 - 3300331 - | biopolymer transport protein ExbD/TolR Shal_2723 3301231 - 3300749 - | MotA/TolQ/ExbB proton channel Shal_2724 3302628 - 3301273 - | MotA/TolQ/ExbB proton channel Shal_2725 3303410 - 3302628 - | hypothetical protein TERM 3616 3302990 - 3303004 + g 79 -10 -3.77087 | TTTTAAGGTTTTCGA CACGTG CAA CACGTG TTTCAGTGTTAAATG TERM 3617 3303606 - 3303589 - H 85 -8.5 -4.40804 | opp_overlap 3303572 CATCATTTCACAAAA TGTTGAC CTGT GTCAACA TTGAGAAACAGCAAA TERM 3618 3303734 - 3303716 - H 73 -6.6 -4.27441 | ACTATGATGAATAAA GCTTGAGG CGC CCCCACGC AACCAACTGTAATTA Shal_2726 3304304 - 3304528 + | hypothetical protein TERM 3619 3304852 - 3304829 - T 100 -14 -5.27335 | opp_overlap 3304812 3304829, overlap 3304812 3304810 TCCTTTAAATAAAAA GACATGGCTT ATAC AAGCCATGTC TTTAAGTCGAACCTT TERM 3620 3304829 - 3304852 + T 95 -14 -3.65199 | opp_overlap 3304812 3304810 3304829, overlap 3304812 TCCTTTAAATAAAAA GACATGGCTT ATAC AAGCCATGTC TTTAAGTCGAACCTT Shal_2727 3307738 - 3304889 - | TonB-dependent receptor TERM 3621 3306896 - 3306881 - G 73 -7.6 -4.13767 | CGTTGGATTTGAAAA GTCAGA AGGA TCTGAC TGACCTGGACCACTG TERM 3622 3306984 - 3307003 + g 73 -7.8 -4.07868 | opp_overlap 3306975 3306978 TTATAACGACCCCAC GGTGGTGC AGAA GAACCACC TTTATCTAGCTCTCC TERM 3623 3308159 - 3308132 - R 75 -2.8 -5.2189 | overlap 3308135 TTAATTATTAAAAAA TGACATAAACTT TTTC AAGTTCACGTTA CTAACACCACTAAGG TERM 3624 3308520 - 3308535 + r 91 -10.4 -4.56961 | opp_overlap 3308520 CCAAGCCAAAAAAAA GCGCCT TAAA AGGCGC TTTTCTATCACTATT TERM 3625 3308535 - 3308520 - R 100 -10.4 -5.86332 | opp_overlap 3308520 CCAAGCCAAAAAAAA GCGCCT TAAA AGGCGC TTTTCTATCACTATT Shal_2728 3309776 - 3308562 - | porin Shal_2729 3312452 - 3310011 - | DNA polymerase II TERM 3626 3311507 - 3311487 - G 73 -7.6 -4.0371 | opp_overlap 3311487, overlap 3311471 CACTTGTGACACAAA TTCGAGCG AGTAG CGCTCAAA TTGATAAAAGGCCGC Shal_2730 3312553 - 3314625 + | ATP-dependent DNA helicase DinG Shal_2731 3314634 - 3315407 + | hypothetical protein Shal_2732 3315404 - 3316066 + | primosomal replication protein N'', putative Shal_2733 3316076 - 3316786 + | hypothetical protein TERM 3627 3316858 - 3316837 - f 90 -13 -2.62983 | CCCATTGTTATATCA CGCCAGCG ACTCTA CGCTGGCG TTACCCTCTCACCTT Shal_2734 3317177 - 3317434 + | hypothetical protein Shal_2735 3318583 - 3317648 - | alpha/beta hydrolase domain-containing protein Shal_2736 3319798 - 3318596 - | major facilitator transporter TERM 3628 3320022 - 3320000 - R 100 -8.5 -5.80817 | gap 1, opp_overlap 3320000 TTCAATATAAAAAAA GCACC-AGTG CTGC CACTTGGTGC TTTATCAAGCAAAAC TERM 3629 3320000 - 3320022 + r 77 -8.5 -3.85698 | gap 1, opp_overlap 3320000 TTCAATATAAAAAAA GCACC-AGTG CTGC CACTTGGTGC TTTATCAAGCAAAAC Shal_2737 3322198 - 3320048 - | phosphate acetyltransferase TERM 3630 3320707 - 3320721 + g 73 -10 -3.34062 | opp_overlap 3320704, overlap 3320705 CTTGGGCAACCATCA TGGTGC CTA GCACCA TATTGTCCTTAAGTT TERM 3631 3322105 - 3322094 - G 70 -2.2 -5.04987 | overlap 3322084 AATAGGCTTAAAAAA GCGA ACTT TCAC ACCTTGATGTTCAAA TERM 3632 3322252 - 3322240 - R 70 -9.1 -3.18274 | TTCATCTCAATTTAA CGTGC ACT GCACG CCTGACGTTTCCAAC Shal_2738 3323492 - 3322284 - | acetate kinase TERM 3633 3322378 - 3322404 + g 79 -10.1 -3.75937 | TCAGCAGTGATCTGC CCTTGTTGCCC AAAAC GGGCCGCAAGG TTTCGCTGTCTGTCT Shal_2739 3324883 - 3323684 - | trans-2-enoyl-CoA reductase TERM 3634 3324776 - 3324786 + g 76 -8.2 -4.17023 | GGCTCCTGACTCTAT CGGC TTT GCCG TTTTAACATAATTAA Shal_2740 3325326 - 3324907 - | dehydratase Shal_2741 3326946 - 3325354 - | coenzyme A transferase TERM 3635 3325562 - 3325584 + g 75 -2.6 -5.16472 | opp_overlap 3325562, overlap 3325564 GCTAGCCTAAAAACA GCCCTCTCTG TGA TATAGAGGAC TTTTTTGCCATTTTT TERM 3636 3327313 - 3327287 - R 100 -13.2 -4.91778 | opp_overlap 3327287 CAAACATAAAATAAA GAGTTGCTATAT AAA ATACAGCAACTC TTTTATTATTCTATT TERM 3637 3327287 - 3327313 + r 93 -11 -4.99312 | opp_overlap 3327287 CAAACATAAAATAAA GAGTTGCTATAT AAA ATACAGCAACTC TTTTATTATTCTATT Shal_2742 3328662 - 3327337 - | hypothetical protein Shal_2743 3329823 - 3328717 - | lipase class 2 TERM 3638 3330863 - 3330842 - g 71 -9.5 -3.18264 | TTGTTTATCGATCAA CTTGATGAC ATCA GCCATCAAG TACTCACTTTTATTA Shal_2744 3329999 - 3330883 + | alpha/beta hydrolase fold Shal_2745 3330901 - 3332457 + | alpha/beta hydrolase fold TERM 3639 3332509 - 3332474 - T 91 -9.9 -4.58213 | overlap 3332462 3332476 TAACTAATCACAAAA TGCTTAGCGTAGGTA TATAAG TACCTACGCTAAAAA ATACAAATTAAGTTG TERM 3640 3332507 - 3332476 - T 83 -12.5 -2.59222 | overlap 3332462 3332474 ACTAATCACAAAATG CTTAGCGTAGGTA TATAAG TACCTACGCTAAA AAATACAAATTAAGT Shal_2746 3333566 - 3332616 - | LysR family transcriptional regulator Shal_2747 3333843 - 3334577 + | short-chain dehydrogenase/reductase SDR Shal_2748 3334660 - 3335865 + | acetyl-CoA acetyltransferase TERM 3641 3335882 - 3335909 + T 76 -10.8 -2.53903 | gap 1, opp_overlap 3335888, overlap 3335888 CTCAGTTCTCACTTA CAAAAA-GGCTCA AAT TGAGCCTTTTTTG ATCGTTTTTCAAAAG TERM 3642 3335888 - 3335902 + T 100 -10 -5.25656 | opp_overlap 3335888, overlap 3335882 TCTCACTTACAAAAA GGCTCA AAT TGAGCC TTTTTTGATCGTTTT TERM 3643 3335902 - 3335888 - T 93 -10 -4.87665 | opp_overlap 3335888 3335882 TCTCACTTACAAAAA GGCTCA AAT TGAGCC TTTTTTGATCGTTTT TERM 3644 3336893 - 3336868 - T 79 -9.1 -3.90318 | opp_overlap 3336873, overlap 3336873 CGACGATTCTATAAA CAAAAGCCCTT AAAA AAGGGCTTTTT TTACACTATTTACAT TERM 3645 3336873 - 3336888 + T 95 -9 -5.46629 | opp_overlap 3336873 3336868 ATTCTATAAACAAAA GCCCTT AAAA AAGGGC TTTTTTTACACTATT TERM 3646 3336888 - 3336873 - T 90 -9 -4.99645 | opp_overlap 3336873, overlap 3336868 ATTCTATAAACAAAA GCCCTT AAAA AAGGGC TTTTTTTACACTATT Shal_2749 3337334 - 3337020 - | helix-hairpin-helix repeat-containing competence protein ComEA Shal_2750 3337710 - 3339116 + | anion transporter TERM 3647 3339129 - 3339151 + T 100 -13.4 -5.0809 | opp_overlap 3339129 TAACCTAATACAGAA GAGCCCAACC TTA GGTCGGGCTC TTTTTATACTTTATT TERM 3648 3339151 - 3339129 - T 100 -15.6 -3.70553 | opp_overlap 3339129 TAACCTAATACAGAA GAGCCCAACC TTA GGTCGGGCTC TTTTTATACTTTATT Shal_2751 3340377 - 3339181 - | cystathionine gamma-synthase TERM 3649 3339496 - 3339506 + g 74 -6.8 -4.23758 | GCCAAGCAATTTATG GCCA GGA TGGC TTTTAAGTGTCGGGT TERM 3650 3340561 - 3340602 + r 82 -11.1 -3.53091 | opp_overlap 3340567, overlap 3340563 3340567 TTTGAGGCGAATTTG AGTTAAGCCGCTTGTAA ACTGAATG TTACAAGCGGCTTAATA TTTAAGGAGGAGACT TERM 3651 3340563 - 3340600 + r 100 -15.9 -3.34398 | opp_overlap 3340567, overlap 3340561 3340567 TGAGGCGAATTTGAG TTAAGCCGCTTGTAA ACTGAATG TTACAAGCGGCTTAA TATTTAAGGAGGAGA TERM 3652 3340596 - 3340567 - R 84 -12.3 -3.07994 | opp_overlap 3340563 3340561 3340567 GCGAATTTGAGTTAA GCCGCTTGTAA ACTGAATG TTACAAGCGGC TTAATATTTAAGGAG TERM 3653 3340567 - 3340596 + r 90 -12.3 -3.45571 | opp_overlap 3340567, overlap 3340563 3340561 GCGAATTTGAGTTAA GCCGCTTGTAA ACTGAATG TTACAAGCGGC TTAATATTTAAGGAG Shal_2752 3341821 - 3340706 - | hypothetical protein Shal_2753 3343311 - 3341866 - | protein of unknown function DUF463 YcjX family protein Shal_2754 3343795 - 3343403 - | phage shock protein C, PspC Shal_2755 3344088 - 3343861 - | phage shock protein B Shal_2756 3344794 - 3344117 - | phage shock protein A, PspA Shal_2757 3344972 - 3346048 + | Fis family transcriptional regulator Shal_2758 3346113 - 3347741 + | extracellular solute-binding protein TERM 3654 3348028 - 3348048 + G 76 -9 -3.73402 | GTTAACTCAAGCACT GCCAGCTT CATTC GAGCTGGC TTTCATCGCAGCTCT Shal_2759 3347741 - 3348772 + | binding-protein-dependent transport systems inner membrane component Shal_2760 3348759 - 3349649 + | binding-protein-dependent transport systems inner membrane component TERM 3655 3350614 - 3350596 - g 70 -2.4 -5.02074 | gap 1, opp_overlap 3350587 3350596 TTATGTCGTAAAAAA GAC-CGC TATTTT GCGTGTC ATTTCCCCTATCACA Shal_2761 3349654 - 3350661 + | oligopeptide/dipeptide ABC transporter, ATPase subunit Shal_2762 3350642 - 3351427 + | ABC transporter related TERM 3656 3351475 - 3351485 + F 76 -6.8 -4.44608 | overlap 3351472 AAACCGTTGATTTAT GCCT CTA AGGC TTGTTTTTAAGTCAG TERM 3657 3351942 - 3351927 - g 73 -7.6 -4.14243 | GACTCTATTCTAAAA GCATCA ACTG TGATGC ATTCAGCCACCAAGC Shal_2763 3351608 - 3352810 + | trans-2-enoyl-CoA reductase TERM 3658 3352876 - 3352854 - T 100 -13.5 -3.93288 | opp_overlap 3352854 CTGTATTGAAGTAAA CGCCGCAAT GTAAT ATTGCGGCG TTTTTTATTGTGTCT TERM 3659 3352854 - 3352876 + T 100 -14.2 -5.62045 | opp_overlap 3352854 CTGTATTGAAGTAAA CGCCGCAATG TAA TATTGCGGCG TTTTTTATTGTGTCT TERM 3660 3353092 - 3353119 + T 82 -11.4 -3.11634 | opp_overlap 3353099, overlap 3353099 CTAATACACGTCCAT AAAAAAACCGGC TTCA GCCGGTTTTTTA TTGCCTCATATGAGA TERM 3661 3353099 - 3353112 + T 100 -9.5 -5.4833 | opp_overlap 3353099, overlap 3353092 ACGTCCATAAAAAAA CCGGC TTCA GCCGG TTTTTTATTGCCTCA TERM 3662 3353112 - 3353099 - T 100 -9.5 -5.61596 | opp_overlap 3353092 3353099 ACGTCCATAAAAAAA CCGGC TTCA GCCGG TTTTTTATTGCCTCA Shal_2764 3355039 - 3353174 - | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 3663 3353221 - 3353240 + g 72 -6.4 -4.24948 | opp_overlap 3353219 TAGCCTTTAGAGACG CGATAACC GCAC GGTAATCG TTTTCACTGTACTGG TERM 3664 3355067 - 3355108 + r 82 -11.1 -3.53012 | opp_overlap 3355076, overlap 3355076 TTGTTGCGATTAATA TAATAAAAAGGCGCATC ACTGTTTG GATGCGCCTTTTTGTAA TTTAAAGGAGGAGAA TERM 3665 3355099 - 3355076 - R 100 -9.6 -5.29716 | opp_overlap 3355067 3355076 TTAATATAATAAAAA GGCGCATC ACTGTTTG GATGCGCC TTTTTGTAATTTAAA TERM 3666 3355076 - 3355099 + r 93 -9.6 -5.04325 | opp_overlap 3355076, overlap 3355067 TTAATATAATAAAAA GGCGCATC ACTGTTTG GATGCGCC TTTTTGTAATTTAAA TERM 3667 3355215 - 3355198 - R 83 -9.9 -3.87815 | opp_overlap 3355178 3355198 TTCTATTTGTAGAAA GCACTGT TAAA ACAGTGC TTTCTTACAATAGCC TERM 3668 3355198 - 3355215 + r 89 -9.9 -4.1822 | opp_overlap 3355198, overlap 3355178 TTCTATTTGTAGAAA GCACTGT TAAA ACAGTGC TTTCTTACAATAGCC Shal_2765 3355530 - 3355258 - | histone family protein DNA-binding protein TERM 3669 3355700 - 3355672 - R 100 -12.5 -4.22652 | overlap 3355673 GGATACTACTCAAAA CCAGTCACTCCAA GGG CTGGAGCGACTGA CTCTCCACAGACTTA TERM 3670 3355699 - 3355673 - R 93 -13.8 -3.13109 | overlap 3355672 GATACTACTCAAAAC CAGTCACTCCAA GGG CTGGAGCGACTG ACTCTCCACAGACTT Shal_2766 3358145 - 3355788 - | ATP-dependent protease La TERM 3671 3356624 - 3356637 + g 72 -8.1 -3.66803 | GCTCAATCTGCTTCG GCAGC AGAT GCTGC TTTGCGATATTAAGC TERM 3672 3358244 - 3358260 + r 86 -9.4 -4.06904 | opp_overlap 3358244 TAAGTGTACAAAAAA GGAGCC AAATA GGCTCC TTTATAATTCACTCA TERM 3673 3358260 - 3358244 - R 100 -9.4 -5.27923 | opp_overlap 3358244 TAAGTGTACAAAAAA GGAGCC AAATA GGCTCC TTTATAATTCACTCA Shal_2767 3359570 - 3358293 - | ATP-dependent protease ATP-binding subunit TERM 3674 3359364 - 3359350 - G 72 -8.6 -3.73386 | overlap 3359341 ACATAATCATCCAAA TGAGCT CTT AGCTCA TGAGGGGTCGGCAAC Shal_2768 3360266 - 3359655 - | ATP-dependent Clp protease proteolytic subunit TERM 3675 3360319 - 3360290 - R 100 -15.1 -5.27335 | opp_overlap 3360290, overlap 3360316 TTCCCTAAATAAAAA TGGCCCGCATGAG GAAC CTCATACGAGCCA TTATAAATGGCTAAT TERM 3676 3360290 - 3360319 + r 80 -10.7 -3.37056 | opp_overlap 3360290 3360316 TTCCCTAAATAAAAA TGGCCCGCATGAG GAAC CTCATACGAGCCA TTATAAATGGCTAAT TERM 3677 3360327 - 3360339 + r 70 -7.7 -3.64822 | opp_overlap 3360316 3360327 ACGAGCCATTATAAA TGGCT AAT AGCCA TTTAAGTCAAGCGAT TERM 3678 3360339 - 3360327 - R 75 -7.7 -3.98214 | opp_overlap 3360327, overlap 3360316 ACGAGCCATTATAAA TGGCT AAT AGCCA TTTAAGTCAAGCGAT Shal_2769 3361661 - 3360357 - | trigger factor TERM 3679 3361870 - 3361902 + H 100 -16.5 -3.91716 | opp_overlap 3361879, overlap 3361879 GCGTGATTTACAGGC GTAAAAAAAGCGACC TAG GGTCGCTTTTTTAAC TTCTTTACAGAATGA TERM 3680 3361893 - 3361879 - H 100 -11.4 -5.42862 | opp_overlap 3361879 3361870 ACAGGCGTAAAAAAA GCGACC TAG GGTCGC TTTTTTAACTTCTTT TERM 3681 3361879 - 3361893 + H 100 -11.4 -5.23016 | opp_overlap 3361879, overlap 3361870 ACAGGCGTAAAAAAA GCGACC TAG GGTCGC TTTTTTAACTTCTTT TERM 3682 3362033 - 3362055 + H 71 -9.8 -2.88544 | overlap 3362036 GATTCGAACCTGCGG CCACCCGCTT AGA AGGCGGGTGC TCTATCCAACTGAGC TERM 3683 3362036 - 3362052 + H 72 -10.1 -2.69468 | overlap 3362033 TCGAACCTGCGGCCA CCCGCTT AGA AGGCGGG TGCTCTATCCAACTG TERM 3684 3362118 - 3362134 + H 79 -9.5 -3.727 | TCCTGAACTGGGCAA CTAACGT TAC ACGTTAG TTTAAATGTGGTCGG Shal_2770 3362591 - 3363445 + | methylenetetrahydrofolate dehydrogenase (NADP(+)) TERM 3685 3363524 - 3363545 + T 80 -11.6 -2.79679 | opp_overlap 3363521 TGCTCAACCATACTC CCCCATCG TTCTGT CGATGGGG TGTGGTACAAATGTT TERM 3686 3363673 - 3363620 - T 100 -31.5 -3.28712 | opp_overlap 3363621 3363632 3363639, overlap 3363621 3363639 TGGGGTGTGGCATAA GTGTTCCAGACACAAAAAAGCCTGC ATAA GCAGGCTTTTTTGTGTCTGGAACAT AATGTCAGTATGACT TERM 3687 3363672 - 3363621 - T 100 -35 -2.57132 | opp_overlap 3363621 3363632 3363639, overlap 3363620 3363639 GGGGTGTGGCATAAG TGTTCCAGACACAAAAAAGCCTGC ATAA GCAGGCTTTTTTGTGTCTGGAACA TAATGTCAGTATGAC TERM 3688 3363621 - 3363672 + T 100 -35 -2.65815 | opp_overlap 3363621 3363620 3363639, overlap 3363632 3363639 GGGGTGTGGCATAAG TGTTCCAGACACAAAAAAGCCTGC ATAA GCAGGCTTTTTTGTGTCTGGAACA TAATGTCAGTATGAC TERM 3689 3363632 - 3363661 + T 100 -18.1 -2.8805 | opp_overlap 3363621 3363620 3363639, overlap 3363621 3363639 TAAGTGTTCCAGACA CAAAAAAGCCTGC ATAA GCAGGCTTTTTTG TGTCTGGAACATAAT TERM 3690 3363639 - 3363654 + T 100 -10.4 -5.4251 | opp_overlap 3363621 3363620 3363639, overlap 3363632 3363621 TCCAGACACAAAAAA GCCTGC ATAA GCAGGC TTTTTTGTGTCTGGA TERM 3691 3363654 - 3363639 - T 100 -10.4 -5.4251 | opp_overlap 3363639 3363632 3363621, overlap 3363621 3363620 TCCAGACACAAAAAA GCCTGC ATAA GCAGGC TTTTTTGTGTCTGGA Shal_2771 3365080 - 3363701 - | cysteinyl-tRNA synthetase Shal_2772 3365364 - 3365876 + | peptidyl-prolyl cis-trans isomerase cyclophilin type Shal_2773 3365887 - 3366603 + | UDP-2,3-diacylglucosamine hydrolase Shal_2774 3367016 - 3367612 + | hypothetical protein TERM 3692 3367675 - 3367705 + T 95 -12.1 -4.18058 | gap 1, opp_overlap 3367682, overlap 3367675 3367682 CTTAGATTTGGGTAA C-AAAAAAGCCGAC TTTC GTCGGCTTTTTTAG TTTTAACGTGTACTT TERM 3693 3367675 - 3367704 + T 85 -12.3 -3.10112 | opp_overlap 3367682, overlap 3367675 3367682 CTTAGATTTGGGTAA CAAAAAAGCCGAC TTTC GTCGGCTTTTTTA GTTTTAACGTGTACT TERM 3694 3367697 - 3367682 - T 100 -10.4 -5.4505 | opp_overlap 3367675 3367675 3367682 TTGGGTAACAAAAAA GCCGAC TTTC GTCGGC TTTTTTAGTTTTAAC TERM 3695 3367682 - 3367697 + T 100 -10.4 -5.46698 | opp_overlap 3367682, overlap 3367675 3367675 TTGGGTAACAAAAAA GCCGAC TTTC GTCGGC TTTTTTAGTTTTAAC Shal_2775 3369400 - 3367730 - | glutaminyl-tRNA synthetase TERM 3696 3369514 - 3369543 + r 93 -12.3 -4.0031 | opp_overlap 3369520, overlap 3369520 GCTATATTTATAGCG CAAAAAGCAGCGA ATCA TCGCTGCTTTTTA TTATTTGATAACAGT TERM 3697 3369520 - 3369537 + r 100 -11.3 -5.39905 | opp_overlap 3369520, overlap 3369514 TTTATAGCGCAAAAA GCAGCGA ATCA TCGCTGC TTTTTATTATTTGAT TERM 3698 3369537 - 3369520 - R 93 -11.3 -4.64766 | opp_overlap 3369514 3369520 TTTATAGCGCAAAAA GCAGCGA ATCA TCGCTGC TTTTTATTATTTGAT Shal_2776 3371867 - 3369573 - | ferrous iron transport protein B Shal_2777 3372099 - 3371860 - | FeoA family protein TERM 3699 3372495 - 3372469 - H 73 -10.4 -2.82516 | opp_overlap 3372474, overlap 3372471 TGCTCTATCATTACA CATTAGTAATTT ACA AAACTACTAATG TACAAGTAGTAAAAA TERM 3700 3373161 - 3373131 - g 72 -8.3 -3.76402 | ACCTCACCCATTAAA GTGGCAACAGATG GTATG CACCGATTGCCAC AATCCCCATGGCAGT Shal_2778 3372541 - 3373503 + | cytochrome C family protein Shal_2779 3373519 - 3375639 + | outer membrane protein, putative TERM 3701 3375695 - 3375681 - f 75 -10 -3.1855 | GCTGCTAACACTTAA GCTGTC AAT GACAGC CATGAGCGACCAGTA TERM 3702 3375817 - 3375803 - g 76 -4.3 -5.07486 | overlap 3375815 CACTCGCAATAAAAA GCATT CCACT AATGC TAATAGCCGTATTAG Shal_2780 3375769 - 3377694 + | decaheme cytochrome c MtrF TERM 3703 3377732 - 3377703 - f 78 -10.9 -2.9978 | opp_overlap 3377706, overlap 3377700 3377714 ACAATAATACAACGA GTAGGCCTAAA TAGACCAT TTTAGGCCTAC GACAATTTGTGATGA Shal_2781 3377799 - 3379982 + | decaheme cytochrome c TERM 3704 3380036 - 3380023 - f 84 -8.1 -4.81734 | opp_overlap 3380023 AAATACGAGTAAAAA GAGGC TTCG GCCTC TTTTTTATTGTCCAC TERM 3705 3380023 - 3380036 + F 100 -8.1 -5.55769 | opp_overlap 3380023 AAATACGAGTAAAAA GAGGC TTCG GCCTC TTTTTTATTGTCCAC TERM 3706 3381328 - 3381314 - g 72 -8.6 -3.72743 | CAGCATCAAAATTAA TGCTAC ATG GTAGCA AGCGTATCGAAATTG Shal_2782 3380518 - 3382986 + | hypothetical protein TERM 3707 3383037 - 3383057 + F 100 -10.5 -5.60993 | opp_overlap 3383037 ATGAAGTTAAAAAAA GCGAGAAGA TTA TCTTTTCGC TTTTTTTATCCCCAA TERM 3708 3383057 - 3383037 - f 100 -8.3 -5.54192 | opp_overlap 3383037 ATGAAGTTAAAAAAA GCGAGAAGA TTA TCTTTTCGC TTTTTTTATCCCCAA TERM 3709 3384073 - 3384061 - g 72 -9.1 -3.63073 | opp_overlap 3384061 GACACTGCTCAAGAA CTGCC AAA GGCAG TCATTGCAAACGAAA TERM 3710 3384435 - 3384457 + G 76 -12 -2.64099 | overlap 3384434 TCACAACAGCCCATA CGCAGTGCCA AGC TGGCACTGGG ATTCTGATAACAACC Shal_2783 3383437 - 3385617 + | hypothetical protein TERM 3711 3385655 - 3385683 + F 100 -14.7 -3.64103 | opp_overlap 3385661, overlap 3385661 GTTAACGTGTAATAC AAAAAAGGGAGGC TTA GCCTCCCTTTTTA TTTGGAATATAACTG TERM 3712 3385661 - 3385677 + F 100 -13.7 -5.28942 | opp_overlap 3385661, overlap 3385655 GTGTAATACAAAAAA GGGAGGC TTA GCCTCCC TTTTTATTTGGAATA TERM 3713 3385677 - 3385661 - f 100 -13.7 -5.47159 | opp_overlap 3385661 3385655 GTGTAATACAAAAAA GGGAGGC TTA GCCTCCC TTTTTATTTGGAATA Shal_2784 3385992 - 3388028 + | decaheme cytochrome c TERM 3714 3388103 - 3388086 - f 100 -12.7 -5.02476 | opp_overlap 3388086 3388086 AGAGTTTTGAAAAAA GGGGGAG GTCT CTCCCCC CCACTTTCTCTTCAA TERM 3715 3388732 - 3388705 - g 76 -4.8 -4.76041 | overlap 3388707 3388731 CATACTCAGCAAAAA GCTGACATGAAC AAGC GTTCAAGCCACC CAATGAAGTGGGCGC Shal_2785 3388144 - 3389130 + | cytochrome C family protein TERM 3716 3389355 - 3389373 + G 76 -7.4 -4.25104 | opp_overlap 3389358, overlap 3389356 ATAGCGACAGCGATG ACATTCGC TCT GCGAATGC TTTTGCTACCGAAGA TERM 3717 3389356 - 3389372 + G 77 -10.9 -3.14848 | opp_overlap 3389358, overlap 3389355 TAGCGACAGCGATGA CATTCGC TCT GCGAATG CTTTTGCTACCGAAG Shal_2786 3389144 - 3391246 + | outer membrane protein precursor MtrB TERM 3718 3391302 - 3391274 - f 84 -12.6 -3.02471 | opp_overlap 3391274 3391281, overlap 3391281 CTGGTATTAGATACA CAAAAAACCCGC TTAAT GCGGGTTTTTTA TTGCCTAAAATTAAT TERM 3719 3391274 - 3391302 + F 75 -10.4 -3.08173 | opp_overlap 3391274 3391281, overlap 3391281 CTGGTATTAGATACA CAAAAAACCCGC TTAAT GCGGGTTTTTTA TTGCCTAAAATTAAT TERM 3720 3391281 - 3391295 + F 95 -8.5 -5.4833 | opp_overlap 3391274 3391281, overlap 3391274 TAGATACACAAAAAA CCCGC TTAAT GCGGG TTTTTTATTGCCTAA TERM 3721 3391295 - 3391281 - f 95 -8.5 -5.4492 | opp_overlap 3391281 3391274, overlap 3391274 TAGATACACAAAAAA CCCGC TTAAT GCGGG TTTTTTATTGCCTAA Shal_2787 3391760 - 3392338 + | hypothetical protein TERM 3722 3392396 - 3392434 + G 73 -4.5 -4.74706 | opp_overlap 3392396 CGTAACTTCATTCAA CTCCAAGCAGATATCGC TCAAT GCCAGATCTGCTCTGAG TTTTTGCCTCTTGAA TERM 3723 3392695 - 3392674 - g 72 -9.3 -3.53733 | overlap 3392672 3392676 CTCAGCCGATAAACA GAGCGGCGA TAAA CCGCCGCGC CCCGAATGTGCCAAA TERM 3724 3392693 - 3392676 - g 77 -10.5 -3.34244 | overlap 3392674 3392672 CAGCCGATAAACAGA GCGGCGA TAAA CCGCCGC GCCCCGAATGTGCCA Shal_2788 3392369 - 3392974 + | hypothetical protein Shal_2789 3393111 - 3394271 + | transcriptional regulator, CdaR Shal_2790 3394275 - 3394811 + | type IV pilin, putative Shal_2791 3395861 - 3394896 - | OmpA/MotB domain-containing protein Shal_2792 3396979 - 3395888 - | hypothetical protein Shal_2793 3397709 - 3396981 - | hypothetical protein Shal_2794 3400655 - 3397713 - | P pilus assembly protein porin PapC-like protein TERM 3725 3399273 - 3399294 + g 72 -8.8 -3.55622 | opp_overlap 3399258 TGTCTTAACGCCTAG CTCAGACA AGGTAC TGTCTGAG TTTGACAAAATTCGC TERM 3726 3400064 - 3400046 - G 80 -9.6 -3.88291 | opp_overlap 3400045 CAGTATCGGCATAAA GACTCGAT TTT ATCGAGCC ATACTTTAAGCCTAT Shal_2795 3401185 - 3400652 - | hypothetical protein Shal_2796 3401799 - 3401221 - | hypothetical protein TERM 3727 3401611 - 3401601 - G 74 -6.8 -4.2803 | opp_overlap 3401601 3401599 GATCTGAAGTGAAAA CACC TGT GGTG TCTTTAACATCAAGT TERM 3728 3401985 - 3401973 - R 78 -4.1 -5.18355 | TCTAAAAATCAAAAA TGCCT ACA AAGCA CAAAAATCAGCCTAA TERM 3729 3402155 - 3402110 - R 100 -10.7 -5.76949 | opp_overlap 3402110 CAGCGGTAAAAAAAA TGGCAGATCTCAACTTATA TCCATCTG TATAAGCTAAGAGCTGCCA TTTAGTGTAGAGAAT TERM 3730 3402217 - 3402196 - R 75 -7.9 -4.03167 | GTACAATGTAAAGAA GCCAGCGAC TGAA GTCGGCGGC TTAGGGCTAAAAATA Shal_2797 3405154 - 3402239 - | hypothetical protein TERM 3731 3405060 - 3405076 + g 86 -13.7 -3.12668 | ACTGGAGGGGGCGGT GGCGGCA CAA TGCCGCC TTCACTATCGGAGTC TERM 3732 3405159 - 3405149 - G 86 -3.2 -5.66684 | TAATTTAGAAAAAAA TCGC ATC GCAA ACCTTAATGTCTGTT Shal_2798 3406411 - 3405470 - | hypothetical protein TERM 3733 3406037 - 3406007 - G 75 -3.2 -5.15969 | opp_overlap 3406008, overlap 3406008 TGTTAAGTTAAAAAA CTTGGCGCTACTTT CAC AGATCAGCGCCAAT TTACGTAGATCTGTT TERM 3734 3406335 - 3406321 - G 74 -3.6 -5.08601 | opp_overlap 3406309, overlap 3406309 CGAGGTTAACAAAAA CCTTAT GGT ATAAAG ATAATTTCTCGACCA TERM 3735 3406524 - 3406508 - H 73 -2.1 -5.25976 | overlap 3406509 3406517 3406518 AAGCAAAAAAACAAA CCGCTCA AAC TGTGCGC ACGCACAATAAAAAC Shal_2799 3406705 - 3408063 + | gluconate transporter TERM 3736 3408109 - 3408083 - f 89 -11.7 -3.48593 | gap 1, opp_overlap 3408083 TATCGTTCGATACAA GTAGGCAAGTCC TATC GG-CTTGCCTAC TGTATATACAAGAAT TERM 3737 3408083 - 3408109 + F 91 -13.1 -2.98942 | opp_overlap 3408083 TATCGTTCGATACAA GTAGGCAAGTC CTATC GGCTTGCCTAC TGTATATACAAGAAT Shal_2800 3408190 - 3409344 + | glycerate kinase TERM 3738 3409375 - 3409390 + F 84 -8.2 -4.82901 | opp_overlap 3409375 TTAAAACCCAAAAAA GGCGCT TAAC GGCGCC TTTTTCTCGCAAGGC TERM 3739 3409390 - 3409375 - f 90 -7.5 -5.2696 | opp_overlap 3409375 TTAAAACCCAAAAAA GGCGC TTAACG GCGCC TTTTTCTCGCAAGGC Shal_2801 3409605 - 3411251 + | pyridoxal-dependent decarboxylase TERM 3740 3411307 - 3411260 - T 76 -9.2 -3.76373 | gap 1, opp_overlap 3411265 3411269, overlap 3411263 GGCCTAACAGCTAAA TGACCGCAAGGCTCGATTGA-CG TTA CGCTTTATCGAGCCTTGCTGTAA TGAATAGATCAGTCA TERM 3741 3411304 - 3411263 - T 78 -10.9 -2.974 | gap 1, opp_overlap 3411265 3411269, overlap 3411260 CTAACAGCTAAATGA CCGCAAGGCTCGATTGA-CG TTA CGCTTTATCGAGCCTTGCTG TAATGAATAGATCAG TERM 3742 3411265 - 3411302 + T 93 -14.3 -2.81133 | gap 1, opp_overlap 3411263 3411260, overlap 3411269 AACAGCTAAATGACC GCAAGGCTCGATTGA-CG TTA CGCTTTATCGAGCCTTGC TGTAATGAATAGATC Shal_2802 3411938 - 3411282 - | methyltransferase type 12 Shal_2804 3412876 - 3413853 + | hypothetical protein Shal_2805 3413878 - 3414876 + | hypothetical protein Shal_2806 3414849 - 3415478 + | hypothetical protein TERM 3743 3415491 - 3415510 + F 93 -10.8 -4.98255 | opp_overlap 3415489 3415488 3415486 3415493 TAAAACAAACTATTA GAGGCTAT TTCG ATAGCCTC TTTTTATACTTGGCA TERM 3744 3415829 - 3415817 - g 81 -3.4 -5.33405 | CTGACCAAACAAAAA GTGT CGAAT ACAC TGACAATAACACCGT TERM 3745 3415893 - 3415869 - g 72 -6.5 -4.3129 | opp_overlap 3415869 3415874 3415878 CATCGACTATGAAAA TAACACCGCTA CCA TATCGGTATTA CTTGATGCTGATGCT Shal_2807 3415540 - 3417087 + | lytic transglycosylase catalytic Shal_2808 3417108 - 3417278 + | hypothetical protein TERM 3746 3417773 - 3417763 - g 73 -4.6 -4.87592 | opp_overlap 3417763, overlap 3417758 CTATATAGAAGAAAA CACC AAT GGCG ATTTCAGTAACCTAT Shal_2809 3417281 - 3418018 + | hypothetical protein TERM 3747 3418116 - 3418067 - T 79 -10.2 -3.58343 | gap 1, opp_overlap 3418072 3418074, overlap 3418072 CTTAGTACGCTTAAA GCAAATGGGCGCTTTCTGTTCAC CTACC GTGA-CAGAAAGTCCCTATTTGC CGCCCCTCCCCATGT Shal_2810 3419920 - 3418187 - | phosphoglucomutase/phosphomannomutase alpha/beta/subunit TERM 3748 3419023 - 3419036 + g 72 -5.3 -4.62336 | opp_overlap 3419023 CGTTAGCGCAGGCAA GCATA GCGT TATGC TTTTTGGCCTCGGCT Shal_2811 3420204 - 3421049 + | pseudouridine synthase TERM 3749 3421098 - 3421069 - T 87 -12.3 -3.43676 | opp_overlap 3421076, overlap 3421070 3421076 GCGAGTAAGCGATAA CTAAAAAGCCCAC GAAC GTGGGCTTTTTAT ATCCAGCGCCTCAAG TERM 3750 3421097 - 3421070 - T 100 -15.8 -2.65884 | opp_overlap 3421076, overlap 3421069 3421076 CGAGTAAGCGATAAC TAAAAAGCCCAC GAAC GTGGGCTTTTTA TATCCAGCGCCTCAA TERM 3751 3421091 - 3421076 - T 93 -10.4 -4.93968 | opp_overlap 3421076, overlap 3421070 3421069 AGCGATAACTAAAAA GCCCAC GAAC GTGGGC TTTTTATATCCAGCG TERM 3752 3421076 - 3421091 + T 93 -10.4 -4.96848 | opp_overlap 3421076 3421070 3421069 AGCGATAACTAAAAA GCCCAC GAAC GTGGGC TTTTTATATCCAGCG Shal_2812 3421880 - 3421140 - | cytochrome B561 TERM 3753 3422050 - 3422067 + r 70 -8.5 -3.27298 | opp_overlap 3422062 3422064 CTAAATTAGTGGTCA GTCATCT TTAA AGATGAC TTGGTCATTACACGC Shal_2813 3422712 - 3422047 - | glutathione S-transferase domain-containing protein Shal_2814 3422971 - 3423819 + | MscS mechanosensitive ion channel Shal_2815 3424127 - 3423906 - | hypothetical protein Shal_2816 3424609 - 3424166 - | hypothetical protein TERM 3754 3424869 - 3424825 - R 76 -11 -2.63159 | opp_overlap 3424828 3424838, overlap 3424838 AACATAATTAATCTA TGGGTATAAAAAAGCAGCAA GAATA TTGCTGCTTTTTTACACTTA GTCGTCAGTATCAAT TERM 3755 3424828 - 3424866 + r 100 -14.9 -3.22774 | opp_overlap 3424825 3424838, overlap 3424838 ATAATTAATCTATGG GTATAAAAAAGCAGCAA GAATA TTGCTGCTTTTTTACAC TTAGTCGTCAGTATC TERM 3756 3424856 - 3424838 - R 93 -8.9 -5.252 | opp_overlap 3424838 3424828, overlap 3424825 TATGGGTATAAAAAA GCAGCAA GAATA TTGCTGC TTTTTTACACTTAGT TERM 3757 3424838 - 3424856 + r 90 -8.9 -5.10029 | opp_overlap 3424825 3424838, overlap 3424828 TATGGGTATAAAAAA GCAGCAA GAATA TTGCTGC TTTTTTACACTTAGT Shal_2817 3425998 - 3424895 - | 3-beta hydroxysteroid dehydrogenase/isomerase Shal_2818 3427726 - 3426005 - | peptide synthase TERM 3758 3427125 - 3427108 - G 71 -6.9 -4.1822 | overlap 3427109 3427111 TCTTATGGGAATAAA CCACGCC CTTT GGCGTGC CCGTACTGCCGCTGG TERM 3759 3427124 - 3427109 - G 73 -10.4 -3.10611 | overlap 3427108 3427111 CTTATGGGAATAAAC CACGCC CTTT GGCGTG CCCGTACTGCCGCTG TERM 3760 3427700 - 3427677 - G 95 -13.2 -3.95584 | opp_overlap 3427677 GCGGCACTAACTAAA TGACGGCACA AATT TGCGCCGTCA TTTTTTTGAGTCAAC TERM 3761 3427677 - 3427700 + g 100 -11 -5.47218 | opp_overlap 3427677 GCGGCACTAACTAAA TGACGGCACA AATT TGCGCCGTCA TTTTTTTGAGTCAAC Shal_2819 3428637 - 3427732 - | alpha/beta hydrolase fold TERM 3762 3428691 - 3428708 + r 89 -9.9 -4.1891 | opp_overlap 3428687 3428685 TTAGCTAAAGAGGTA GCCTGTA AATT TACAGGC TTTCTATTGACGCAA Shal_2820 3429816 - 3428767 - | 3-oxoacyl-(acyl carrier protein) synthase III TERM 3763 3429494 - 3429471 - G 75 -9.6 -3.63627 | TGCTGATATCGTAAA TCGCCGTATC TTTA GATACGCCGA GTTCAGCTGCGATAC TERM 3764 3429940 - 3429927 - R 79 -3.1 -5.4833 | overlap 3429928 TGATTCAATAAAAAA CCTCA TTGC TGAGA GGTTTTAATCCAATC Shal_2821 3431404 - 3430076 - | hypothetical protein TERM 3765 3431440 - 3431468 + r 73 -10.3 -2.77962 | opp_overlap 3431443, overlap 3431439 3431443 GCTATAAGCCAAGAA AAACGAGCACCTA AAT TAGGTGCTCGTCA GTTTAACATGTCACA TERM 3766 3431443 - 3431465 + r 100 -16.4 -2.6583 | opp_overlap 3431443, overlap 3431440 3431439 ATAAGCCAAGAAAAA CGAGCACCTA AAT TAGGTGCTCG TCAGTTTAACATGTC TERM 3767 3431465 - 3431443 - R 100 -16.4 -5.14645 | opp_overlap 3431440 3431439 3431443 ATAAGCCAAGAAAAA CGAGCACCTA AAT TAGGTGCTCG TCAGTTTAACATGTC Shal_2822 3432674 - 3431496 - | methyl-accepting chemotaxis protein TERM 3768 3432668 - 3432657 - G 74 -5.8 -4.57755 | opp_overlap 3432657, overlap 3432652 AGCTATCATACAAAA GCGA AACA TCGC TTTCATAACTCCTCC Shal_2823 3433055 - 3433297 + | hypothetical protein TERM 3769 3433373 - 3433345 - T 93 -12.6 -4.13767 | opp_overlap 3433352, overlap 3433352 GGCTTGAGCTGAAAA CAAAAAAGCCGC TATTC GCGGCTTTTTTA CAATTATGTTTGTAT TERM 3770 3433352 - 3433366 + T 90 -8.5 -5.11033 | opp_overlap 3433345 3433352 GCTGAAAACAAAAAA GCCGC TATTC GCGGC TTTTTTACAATTATG TERM 3771 3433366 - 3433352 - T 100 -8.5 -5.79595 | opp_overlap 3433352, overlap 3433345 GCTGAAAACAAAAAA GCCGC TATTC GCGGC TTTTTTACAATTATG Shal_2824 3433778 - 3433404 - | hypothetical protein Shal_2825 3435823 - 3433847 - | choline/carnitine/betaine transporter TERM 3772 3436306 - 3436278 - R 100 -14.8 -3.91144 | opp_overlap 3436278 3436285, overlap 3436285 TCTATAGCCCAGAAA CAAAAAAGCAGC TTTTC GCTGCTTTTTTG TTTAATCAAACTCAA TERM 3773 3436278 - 3436306 + r 100 -14.8 -3.73775 | opp_overlap 3436278 3436285, overlap 3436285 TCTATAGCCCAGAAA CAAAAAAGCAGC TTTTC GCTGCTTTTTTG TTTAATCAAACTCAA TERM 3774 3436285 - 3436299 + r 100 -7.1 -5.68438 | opp_overlap 3436285 3436278, overlap 3436278 CCCAGAAACAAAAAA GCAGC TTTTC GCTGC TTTTTTGTTTAATCA TERM 3775 3436299 - 3436285 - R 100 -7.1 -5.72622 | opp_overlap 3436278 3436285, overlap 3436278 CCCAGAAACAAAAAA GCAGC TTTTC GCTGC TTTTTTGTTTAATCA Shal_2826 3437113 - 3436403 - | transcriptional regulator PhoU TERM 3776 3436738 - 3436754 + g 84 -8.7 -4.58283 | TATTTTCGATGCTTA CCAGCAG TGG CTGTTGG TTTTTAGAGCGCTTA TERM 3777 3436907 - 3436933 + g 74 -8.1 -3.96624 | GCGAGCACATTCTTC GTCAATGGC CACTTCCAT GCCATTGAC TTTATGATCGCCCTC Shal_2827 3437953 - 3437135 - | phosphate ABC transporter, ATPase subunit Shal_2828 3439637 - 3437985 - | phosphate ABC transporter, inner membrane subunit PstA Shal_2829 3441980 - 3439725 - | binding-protein-dependent transport systems inner membrane component TERM 3778 3440570 - 3440557 - G 76 -8.1 -4.04806 | overlap 3440567 GGCGACATGAAATAA GCGGT ATAT ACCGC GCCAGCGATGGCCAA TERM 3779 3440669 - 3440683 + g 73 -10 -3.35992 | opp_overlap 3440650 3440668 3440667 GCTTTGCCTCAAAGT CGTCAG AGC CTGACG TTGATTGCCATACAT TERM 3780 3441921 - 3441939 + g 75 -3.1 -5.14965 | TGCTCTGCGCGAAGT CCCATTG TTTAT CAATAGG TTTTTTGCTGCAGGT Shal_2830 3442242 - 3442742 + | amino acid-binding ACT domain-containing protein TERM 3781 3442754 - 3442802 + T 88 -11.4 -3.72576 | gap 1, opp_overlap 3442762 3442764 3442767, overlap 3442758 3442762 3442767 GTAAGTTAACAATCG GTATTTAACACAAGCCTGATTTA TGCT TAAGTCAGGCTTATGTTAA-TGC TTTCATAGAGAAGCA TERM 3782 3442758 - 3442799 + T 100 -15.5 -2.96695 | opp_overlap 3442762 3442764 3442767, overlap 3442754 3442762 3442767 GTTAACAATCGGTAT TTAACACAAGCCTGATTTA TGCT TAAGTCAGGCTTATGTTAA TGCTTTCATAGAGAA TERM 3783 3442762 - 3442795 + T 86 -11.9 -3.34227 | opp_overlap 3442762 3442764 3442767, overlap 3442758 3442754 3442767 ACAATCGGTATTTAA CACAAGCCTGATTTA TGCT TAAGTCAGGCTTATG TTAATGCTTTCATAG TERM 3784 3442795 - 3442762 - T 82 -11.9 -3.0701 | opp_overlap 3442762 3442758 3442754 3442767, overlap 3442764 3442767 ACAATCGGTATTTAA CACAAGCCTGATTTA TGCT TAAGTCAGGCTTATG TTAATGCTTTCATAG TERM 3785 3442767 - 3442790 + T 80 -10.4 -3.74416 | opp_overlap 3442764 3442762 3442767, overlap 3442762 3442758 3442754 CGGTATTTAACACAA GCCTGATTTA TGCT TAAGTCAGGC TTATGTTAATGCTTT TERM 3786 3442790 - 3442767 - T 70 -8.2 -3.68988 | opp_overlap 3442767 3442762 3442758 3442754, overlap 3442764 3442762 CGGTATTTAACACAA GCCTGATTTA TGCT TAAGTCAGGC TTATGTTAATGCTTT Shal_2831 3443628 - 3443029 - | diguanylate cyclase TERM 3787 3444161 - 3444183 + r 100 -15 -4.27617 | overlap 3444147 AGCCTTAAGCCTTAA GCCTGACTTA TGC TAAGTCAGGC TTTTACTAGCGTATA Shal_2833 3445455 - 3444235 - | alanine racemase TERM 3788 3445235 - 3445217 - G 73 -10.2 -3.04501 | opp_overlap 3445216 3445215 ATCAATCCCGCAATA CCGTTGCC ATA GGCATCGG CCTTCATAATGGCAC Shal_2834 3446667 - 3446008 - | TetR family transcriptional regulator Shal_2835 3447060 - 3448460 + | xanthine/uracil/vitamin C permease Shal_2836 3448473 - 3450236 + | cryptic adenine deaminase TERM 3789 3450277 - 3450248 - f 93 -10.7 -4.84527 | opp_overlap 3450252, overlap 3450250 3450252 TTGATATAGGAAAAA CATATCCCGCCTT CCTA AAGGCGGGATTAG ATGAACTATGATGTT TERM 3790 3450275 - 3450250 - f 91 -11.9 -4.03909 | opp_overlap 3450252, overlap 3450248 3450252 GATATAGGAAAAACA TATCCCGCCTT CCTA AAGGCGGGATT AGATGAACTATGATG TERM 3791 3450252 - 3450273 + F 95 -14.5 -3.07443 | opp_overlap 3450250 3450248 3450252 TATAGGAAAAACATA TCCCGCCTT CCTA AAGGCGGGA TTAGATGAACTATGA TERM 3792 3450273 - 3450252 - f 100 -14.5 -3.59508 | opp_overlap 3450252, overlap 3450250 3450248 TATAGGAAAAACATA TCCCGCCTT CCTA AAGGCGGGA TTAGATGAACTATGA Shal_2837 3450980 - 3451798 + | hypothetical protein TERM 3793 3451875 - 3451837 - T 80 -10.4 -3.67864 | opp_overlap 3451841, overlap 3451853 TAACTTAAGGGTAAA CAGAGCTTTAGGGAAAGC CAA GCTTTAACTAAAGCTTTG CTGAGTCAATAATTT TERM 3794 3451841 - 3451871 + T 79 -9.8 -3.767 | opp_overlap 3451837 3451853 TTAAGGGTAAACAGA GCTTTAGGGAAAGC CAA GCTTTAACTAAAGC TTTGCTGAGTCAATA TERM 3795 3451876 - 3451853 - T 70 -8.2 -3.65529 | opp_overlap 3451841, overlap 3451837 AGAGCTTTAGGGAAA GCCAAGCTTT AACT AAAGCTTTGC TGAGTCAATAATTTA TERM 3796 3451913 - 3451946 + T 100 -16.9 -5.4433 | opp_overlap 3451913 AGCGTTAACTAAAAA GGCCCTGCAATTAGT GATT AATAATTGCAGGGCC TTTTTCTTTCTATAT TERM 3797 3451946 - 3451913 - T 100 -16.9 -4.86621 | opp_overlap 3451913 AGCGTTAACTAAAAA GGCCCTGCAATTAGT GATT AATAATTGCAGGGCC TTTTTCTTTCTATAT Shal_2838 3452408 - 3451989 - | hypothetical protein Shal_2839 3453067 - 3452495 - | hypothetical protein TERM 3798 3453192 - 3453212 + r 83 -9 -3.97042 | gap 1, opp_overlap 3453192 TTTAATGTAAAAAAA GCCGAC-CC TTTA GGAGTCGGC TTTGGTTACTGATAA TERM 3799 3453212 - 3453192 - R 100 -10.4 -5.53288 | opp_overlap 3453192 TTTAATGTAAAAAAA GCCGACCC TTTAG GAGTCGGC TTTGGTTACTGATAA Shal_2840 3456185 - 3453255 - | collagenase TERM 3800 3454522 - 3454533 + g 72 -5.8 -4.41494 | opp_overlap 3454522 CCCAACTCGATAGCA CCGT CATT ACGG TTTTGCTTCGAGATA TERM 3801 3455307 - 3455321 + g 80 -10 -3.97088 | CGCATCGATTAGCTC GCCATG CTC CATGGC TTTGCTGTTGTAAGC TERM 3802 3455652 - 3455686 + g 84 -13.7 -2.83409 | opp_overlap 3455652 3455658, overlap 3455644 3455660 TGCACCGCGCAAGAA GTAGAACAGGTTACG CATTT CGTAACCTGTGCTGC TGTCATAGGTTGCTG TERM 3803 3455686 - 3455652 - G 82 -11.5 -3.62597 | opp_overlap 3455644 3455652 3455660, overlap 3455658 TGCACCGCGCAAGAA GTAGAACAGGTTACG CATTT CGTAACCTGTGCTGC TGTCATAGGTTGCTG TERM 3804 3455680 - 3455658 - G 86 -12.1 -3.61089 | opp_overlap 3455652 3455644 3455660, overlap 3455652 GCGCAAGAAGTAGAA CAGGTTACG CATTT CGTAACCTG TGCTGCTGTCATAGG TERM 3805 3455893 - 3455915 + g 73 -9.9 -3.38522 | gap 1, overlap 3455888 TCGGCTTCAGCTGTC GGGCCAGATG CTCC CATC-GGCCC TTCAATCTTTTTTTC TERM 3806 3456867 - 3456840 - H 75 -2.8 -5.24796 | gap 1, overlap 3456841 3456859 3456860 TTCATATAACAAAAA GGCATG-GCTTAT AAC ATAAGCCCATACT GGGTCAATAGACTAA Shal_2841 3456978 - 3457571 + | lysine exporter protein LysE/YggA Shal_2842 3457592 - 3458158 + | hypothetical protein TERM 3807 3458194 - 3458169 - f 75 -10.5 -3.14548 | opp_overlap 3458188 AATAACACTACCCAA TGGCTACGACA TGTT TGTTGTAGCCA AGCAACTATTTATCA Shal_2843 3458231 - 3458995 + | ribonuclease H TERM 3808 3459135 - 3459160 + G 93 -9.7 -4.66163 | gap 1, opp_overlap 3459156, overlap 3459156 3459157 CATAGAGCTCCTATT CG-CGTCATCCG TAT CGGAAGACGGCG TTTTTGGCTGCGCCT Shal_2844 3459099 - 3459518 + | hypothetical protein TERM 3809 3460863 - 3460852 - g 71 -7.2 -4.09739 | overlap 3460853 CCAACTGCGCTAAAA CGCC ATTT GGCG GCGCAATAACAGCAG Shal_2845 3459675 - 3461033 + | leucyl aminopeptidase TERM 3810 3461059 - 3461090 + T 88 -11 -3.97042 | opp_overlap 3461059 3461064 3461067, overlap 3461064 3461067 ATTGCGGATTAGCAA TCAAAGAAGGCTCA TAAA TGGGCCTTCTTTAA TTTAATTACTCATAC TERM 3811 3461090 - 3461059 - T 79 -11 -3.21218 | opp_overlap 3461059 3461064 3461067, overlap 3461064 3461067 ATTGCGGATTAGCAA TCAAAGAAGGCTCA TAAA TGGGCCTTCTTTAA TTTAATTACTCATAC TERM 3812 3461064 - 3461085 + T 90 -10.9 -4.15201 | opp_overlap 3461059 3461064 3461067, overlap 3461059 3461067 GGATTAGCAATCAAA GAAGGCTCA TAAA TGGGCCTTC TTTAATTTAATTACT TERM 3813 3461085 - 3461064 - T 79 -8.7 -3.97042 | opp_overlap 3461064 3461059 3461067, overlap 3461059 3461067 GGATTAGCAATCAAA GAAGGCTCA TAAA TGGGCCTTC TTTAATTTAATTACT TERM 3814 3461067 - 3461082 + T 73 -6.8 -4.17906 | opp_overlap 3461067 3461064 3461059, overlap 3461064 3461059 TTAGCAATCAAAGAA GGCTCA TAAA TGGGCC TTCTTTAATTTAATT Shal_2846 3462249 - 3461233 - | ApbE family lipoprotein TERM 3815 3462326 - 3462303 - R 100 -16.8 -5.71638 | opp_overlap 3462303 TAATAAGCAAAAAAA TGCCGCTCAC TGTC GTGAGCGGCA TTTACGTTAAGCGCT TERM 3816 3462303 - 3462326 + r 100 -16.8 -3.75332 | opp_overlap 3462303 TAATAAGCAAAAAAA TGCCGCTCAC TGTC GTGAGCGGCA TTTACGTTAAGCGCT Shal_2847 3464104 - 3462350 - | flavocytochrome c Shal_2848 3464879 - 3464133 - | hypothetical protein TERM 3817 3465289 - 3465263 - R 100 -13.2 -5.58179 | opp_overlap 3465263 CACCACAATAAAAAA GGCTAAGTAACA AAG TATTACTTAGCC TTTTTAAGAGTTAAC TERM 3818 3465263 - 3465289 + r 91 -11 -4.62471 | opp_overlap 3465263 CACCACAATAAAAAA GGCTAAGTAACA AAG TATTACTTAGCC TTTTTAAGAGTTAAC Shal_2849 3466528 - 3465311 - | histidine kinase A domain-containing protein Shal_2850 3467190 - 3466519 - | two component transcriptional regulator Shal_2851 3467928 - 3467194 - | LuxR family transcriptional regulator Shal_2852 3468627 - 3469697 + | hypothetical protein TERM 3819 3469780 - 3469734 - f 91 -14 -2.77899 | opp_overlap 3469732 3469733 3469732, overlap 3469731 CTTTGTGAGTAACCA TCACGCAAGGC-GAGCATGAGT TTTAT ACCCAC-CTCAGCCTTGCGTGA GCTTCCTGCTATCTA Shal_2853 3470014 - 3470316 + | transcriptional antiterminator, Rof Shal_2854 3470566 - 3471006 + | hypothetical protein TERM 3820 3471064 - 3471035 - T 100 -7.1 -5.72622 | opp_overlap 3471039 3471042 CTGATAAACAAAAAA CTAAGAGCCCAGC ACAA ACTGGGTTCTTTG CTTGAAAAACTATCA TERM 3821 3471039 - 3471060 + T 73 -8 -3.90291 | opp_overlap 3471035, overlap 3471042 TAAACAAAAAACTAA GAGCCCAG CACAAA CTGGGTTC TTTGCTTGAAAAACT Shal_2855 3472476 - 3471268 - | nucleoside transporter TERM 3822 3472978 - 3472949 - R 71 -7.3 -3.86897 | gap 1, opp_overlap 3472952 3472954, overlap 3472950 GCTATTTTGGATAAA TGCGAGCTAGAAGT GTC ACTTCTAGCTCT-A TGCTGCTTCCATGCT TERM 3823 3472952 - 3472976 + r 100 -15.9 -2.8664 | opp_overlap 3472949 3472950, overlap 3472954 ATTTTGGATAAATGC GAGCTAGAAGT GTC ACTTCTAGCTC TATGCTGCTTCCATG TERM 3824 3472954 - 3472974 + r 84 -12.7 -2.98015 | opp_overlap 3472949 3472950, overlap 3472952 TTTGGATAAATGCGA GCTAGAAGT GTC ACTTCTAGC TCTATGCTGCTTCCA Shal_2856 3474091 - 3473000 - | rod shape-determining protein RodA TERM 3825 3473328 - 3473318 - G 78 -5.4 -4.77173 | opp_overlap 3473318 GGTTGAGAAAATAAA GTCA GTA TGAC TTTCCGGAATGAATC TERM 3826 3474337 - 3474323 - R 71 -4.2 -4.88407 | AATAAATTAACAAAA GCACTT AAC AAGAGC ACTCAATAAAAGTAC TERM 3827 3474410 - 3474435 + r 74 -6.1 -4.48299 | AGCATGCAATCGCCA TTACCGAACGC TAAA GCATCCGGTAA TTTGTTTGAATATCA Shal_2857 3475455 - 3474508 - | UspA domain-containing protein Shal_2859 3476701 - 3476618 - | hypothetical protein Shal_2860 3477834 - 3477490 - | hypothetical protein Shal_2861 3479616 - 3477859 - | Alkyl sulfatase and related hydrolase-like protein TERM 3828 3479073 - 3479060 - G 70 -2.4 -4.99035 | overlap 3479024 TTATCGAGAGAAAAA CCTA GTTTAT TAGG AAAAGCATCCGGACC Shal_2862 3479787 - 3480719 + | LysR family transcriptional regulator Shal_2863 3480899 - 3482023 + | alpha/beta hydrolase domain-containing protein Shal_2864 3484037 - 3482397 - | sulfatase TERM 3829 3484012 - 3483998 - G 72 -6.4 -4.20696 | GTATTAAGGTGAAAA GCGCAT AGG ATACGC CAGACTTAAAGGGGC TERM 3830 3484799 - 3484784 - R 100 -10.4 -5.4251 | opp_overlap 3484784 TCCAGACACAAAAAA GCCCGA TTTC TCGGGC TTTCTCTTTTATAAA TERM 3831 3484784 - 3484799 + r 91 -10.4 -4.51238 | opp_overlap 3484784 TCCAGACACAAAAAA GCCCGA TTTC TCGGGC TTTCTCTTTTATAAA Shal_2866 3486468 - 3484876 - | ABC transporter related TERM 3832 3486567 - 3486524 - R 100 -13.4 -5.58522 | TAGATAAAACAAAAA CCAGTAAAGTTAGTTCAAGT TTTA ATCTGAACCAACTTTACCGG CCGAAGGACGACGCA Shal_2867 3489054 - 3486769 - | copper-translocating P-type ATPase Shal_2868 3489177 - 3489572 + | MerR family transcriptional regulator Shal_2869 3491715 - 3489682 - | peptidase S9 prolyl oligopeptidase Shal_2870 3492019 - 3491792 - | hypothetical protein TERM 3833 3492126 - 3492145 + r 86 -7.8 -4.98531 | opp_overlap 3492129, overlap 3492129 ATCGCGGCCATAAAA AAACGGGC CTAA GCCCGTTA TTTTTCATTTGCAGC TERM 3834 3492129 - 3492142 + r 91 -9.5 -4.58698 | opp_overlap 3492129, overlap 3492126 GCGGCCATAAAAAAA CGGGC CTAA GCCCG TTATTTTTCATTTGC TERM 3835 3492142 - 3492129 - R 100 -9.5 -5.60993 | opp_overlap 3492126 3492129 GCGGCCATAAAAAAA CGGGC CTAA GCCCG TTATTTTTCATTTGC Shal_2871 3492277 - 3492167 - | hypothetical protein Shal_2872 3493042 - 3492284 - | 3-ketoacyl-(acyl-carrier-protein) reductase TERM 3836 3493040 - 3493056 + g 79 -2.1 -5.48787 | CTTATCTTTTAAATC CATTGGG TCA CCCTTTG TTTTTTATCTGTTCT Shal_2873 3493976 - 3493047 - | 3-hydroxyisobutyrate dehydrogenase TERM 3837 3494117 - 3494134 + r 74 -4.9 -4.72007 | gap 1, overlap 3494119 AAAAAGCTATCGCCT CG-GCTAA CCG TTAGCTCG TTTCTTTTAATGCAC Shal_2874 3495355 - 3494153 - | enoyl-CoA hydratase/isomerase TERM 3838 3495033 - 3495020 - G 72 -3.1 -5.00616 | gap 1 CTCCTGCTTAAAAAA CT-CGG TTG CCGCAG CGGTTACCTCGCCCG Shal_2875 3496164 - 3495355 - | enoyl-CoA hydratase Shal_2876 3497374 - 3496217 - | acyl-CoA dehydrogenase domain-containing protein Shal_2877 3499089 - 3497590 - | methylmalonate-semialdehyde dehydrogenase Shal_2878 3500457 - 3499267 - | acetyl-CoA acetyltransferase TERM 3839 3499413 - 3499376 - G 79 -9.7 -3.79519 | overlap 3499377 AAGGTGACGAGTAAA CGTGCGCCCGAGCAGCC AATG GGATGCCCAAGCGCGCA GGCGCCACCATTAAC TERM 3840 3499412 - 3499377 - G 74 -11 -2.87229 | overlap 3499376 AGGTGACGAGTAAAC GTGCGCCCGAGCAGCC AATG GGATGCCCAAGCGCGC AGGCGCCACCATTAA Shal_2879 3500955 - 3501626 + | LuxR family transcriptional regulator Shal_2880 3501809 - 3502336 + | hypothetical protein TERM 3841 3502391 - 3502371 - f 76 -8.9 -3.66378 | overlap 3502372 GATATTTTATCGAAA TTGGGGCCC TTT AGGCCCCAC TTGAGGACTTATGCG TERM 3842 3502390 - 3502372 - f 83 -12.4 -2.79505 | overlap 3502371 ATATTTTATCGAAAT TGGGGCCC TTT AGGCCCCA CTTGAGGACTTATGC Shal_2881 3502402 - 3503100 + | P pilus assembly protein, chaperone PapD Shal_2882 3503097 - 3505547 + | fimbrial biogenesis outer membrane usher protein TERM 3843 3506096 - 3506084 - g 70 -9.1 -3.36195 | overlap 3506082 CAAATAGCAAAGACA GCTGG TTA CCAGC AACGGGGACATCGAT Shal_2883 3505534 - 3506433 + | hypothetical protein TERM 3844 3506547 - 3506498 - T 91 -10.4 -4.55295 | gap 2, opp_overlap 3506509 3506515, overlap 3506502 3506509 GTCTCTACAAATAAA GGTACATAAAATGCCAG--TACTC ATTA GAGTATTCTGGCATTTTATGCAAC TAACAGCGATTTACT TERM 3845 3506543 - 3506502 - T 81 -12 -2.82776 | gap 2, opp_overlap 3506509 3506515, overlap 3506498 3506509 CTACAAATAAAGGTA CATAAAATGCCAG--TACTC ATTA GAGTATTCTGGCATTTTATG CAACTAACAGCGATT Shal_2884 3507511 - 3506573 - | homoserine O-succinyltransferase TERM 3846 3506996 - 3507023 + g 82 -12 -3.44325 | opp_overlap 3506982, overlap 3506984 ATAGTGCTCAGAGGT GCGCTTATGGGT AAAC ACCCCTGAGCGC TTAGTTGTCAGCAGT Shal_2885 3507989 - 3507588 - | hypothetical protein Shal_2886 3508208 - 3508981 + | short-chain dehydrogenase/reductase SDR TERM 3847 3509036 - 3509003 - T 100 -19.9 -3.737 | opp_overlap 3509012, overlap 3509012 CAATTGCGTATGAAA CATAAAAAAGGAGCC TATT GGCTCCTTTTTTATG GGTAGGATTTGTCCA TERM 3848 3509012 - 3509027 + T 100 -10.4 -5.28176 | opp_overlap 3509012 3509003 ATGAAACATAAAAAA GGAGCC TATT GGCTCC TTTTTTATGGGTAGG TERM 3849 3509027 - 3509012 - T 100 -10.4 -5.5762 | opp_overlap 3509012, overlap 3509003 ATGAAACATAAAAAA GGAGCC TATT GGCTCC TTTTTTATGGGTAGG Shal_2887 3509708 - 3509064 - | outer membrane protein W TERM 3850 3510393 - 3510376 - g 88 -3.4 -5.7946 | overlap 3510378 TTGTTAATAAAAAAA TAGCGA CTGCCC TCGCCA ACCTCCCTGAACCCG Shal_2888 3510288 - 3511391 + | RND family efflux transporter MFP subunit Shal_2889 3511401 - 3514505 + | acriflavin resistance protein TERM 3851 3514573 - 3514535 - T 79 -9 -3.85389 | overlap 3514529 CCGCAATAACGTAAA CCCTTTACCATTGTTATT GGC AATAGCAATGGTGAACGG ATTCAGCGGTATACT Shal_2890 3515593 - 3514649 - | LysR family transcriptional regulator Shal_2891 3515728 - 3516552 + | enoyl-CoA hydratase/isomerase TERM 3852 3516562 - 3516602 + F 74 -6.4 -4.47679 | gap 1, opp_overlap 3516586, overlap 3516549 GGCTAGATGCATATC TAGTATGGTCAGCTATAAA CACA TCTATGGCTG-CCATATTA TTTATATTTTGAATT Shal_2892 3516675 - 3517565 + | radical SAM domain-containing protein TERM 3853 3517650 - 3517681 + T 72 -10.4 -2.54896 | opp_overlap 3517657, overlap 3517646 3517657 AATGCCAGTTCGACA TAAAAAAGGGCT TTATAATC AGCCCTTTTTTA TGAATTAGATAACGA TERM 3854 3517674 - 3517657 - T 82 -4.1 -5.36441 | opp_overlap 3517650 3517646 3517657 GTTCGACATAAAAAA GGGCT TTATAATC AGCCC TTTTTTATGAATTAG TERM 3855 3517657 - 3517674 + T 78 -4.1 -5.31456 | opp_overlap 3517657, overlap 3517650 3517646 GTTCGACATAAAAAA GGGCT TTATAATC AGCCC TTTTTTATGAATTAG Shal_2893 3518431 - 3517709 - | hypothetical protein Shal_2894 3519169 - 3518576 - | hypothetical protein TERM 3856 3519269 - 3519288 + r 77 -6.4 -4.60258 | opp_overlap 3519272, overlap 3519272 GGCTTAATAAACAAA AAAGGAGC CTTA GCTCCTTA TTTATTCTTTACTGC TERM 3857 3519285 - 3519272 - R 100 -8.1 -5.80003 | opp_overlap 3519269 3519272 TTAATAAACAAAAAA GGAGC CTTA GCTCC TTATTTATTCTTTAC TERM 3858 3519272 - 3519285 + r 80 -8.1 -4.38503 | opp_overlap 3519272, overlap 3519269 TTAATAAACAAAAAA GGAGC CTTA GCTCC TTATTTATTCTTTAC Shal_2895 3519716 - 3519315 - | hypothetical protein Shal_2896 3520626 - 3519760 - | acyl-CoA thioesterase II TERM 3859 3520560 - 3520527 - G 72 -8.9 -3.48024 | CTTGACCACCAAAGA CGTGACCAAAACCTA GATC TTGGCTTTGACCACG AAACAGCCCCACTTC Shal_2897 3521639 - 3520707 - | short-chain dehydrogenase/reductase SDR TERM 3860 3521854 - 3521834 - H 76 -6.9 -4.32491 | overlap 3521835 AGTGAAAAATAATAA TGCTTAACA AAG TGTTAAGCC GACCACTTTTGATGA TERM 3861 3521853 - 3521835 - H 75 -10.4 -3.17868 | overlap 3521834 GTGAAAAATAATAAT GCTTAACA AAG TGTTAAGC CGACCACTTTTGATG TERM 3862 3522057 - 3522078 + G 70 -2.3 -4.92777 | gap 1, overlap 3522058 TGGTAACGTACTCGC ACTGCAACTG GAA CAGTT-CAGC TTTTTCATTGCTGTT Shal_2898 3521977 - 3522867 + | 1,4-dihydroxy-2-naphthoate octaprenyltransferase TERM 3863 3522922 - 3522905 - T 100 -9.9 -5.52023 | opp_overlap 3522905 ATGAGCAATAAAAAA GCCTATC GATT GATAGGC TTTTTTGTATGTACA TERM 3864 3522905 - 3522922 + T 100 -9.9 -5.4251 | opp_overlap 3522905 ATGAGCAATAAAAAA GCCTATC GATT GATAGGC TTTTTTGTATGTACA Shal_2899 3524506 - 3522959 - | 6-phosphogluconate dehydrogenase TERM 3865 3524667 - 3524653 - R 71 -7.2 -3.85909 | CTAGGCAAAGCCAAA TGAGTT AAC AACTCA ACATTAATAATTGGT TERM 3866 3524721 - 3524740 + r 79 -5 -5.01546 | opp_overlap 3524722, overlap 3524722 GTTCAAAAACAAAAA ACTGAAAC CTAA GTTTCAGC TTTTTCTCTGCGTTT TERM 3867 3524722 - 3524739 + r 72 -8.5 -3.59301 | opp_overlap 3524722, overlap 3524721 TTCAAAAACAAAAAA CTGAAAC CTAA GTTTCAG CTTTTTCTCTGCGTT TERM 3868 3524739 - 3524722 - R 100 -8.5 -5.93252 | opp_overlap 3524722 3524721 TTCAAAAACAAAAAA CTGAAAC CTAA GTTTCAG CTTTTTCTCTGCGTT Shal_2900 3527342 - 3525438 - | AMP-dependent synthetase and ligase Shal_2901 3527707 - 3528105 + | MerR family transcriptional regulator Shal_2902 3528204 - 3529373 + | acyl-CoA dehydrogenase domain-containing protein TERM 3869 3529429 - 3529413 - f 88 -10.8 -4.07306 | ATAGCCAAGCATAAA GGCGGC GATTT GCCGCC TCACTCTTCCAGCTT Shal_2903 3529461 - 3531068 + | propionyl-CoA carboxylase TERM 3870 3531357 - 3531331 - g 72 -5.8 -4.43844 | overlap 3531346 3531347 GTATTAGTGATAAAA GCCAACGGTAAA AAC TTCAGCGCCGGC GCCGATCTCAACTGG Shal_2904 3531127 - 3532008 + | enoyl-CoA hydratase/isomerase TERM 3871 3533482 - 3533508 + G 71 -10.2 -2.75844 | overlap 3533481 GACCAGCCATGATCC CTACTCACCTTG GGG CAAAGTGAGTGG CTTTAGGCTCAACAG Shal_2905 3532010 - 3534118 + | carbamoyl-phosphate synthase L chain ATP-binding Shal_2906 3534115 - 3534294 + | hypothetical protein Shal_2907 3534295 - 3535194 + | pyruvate carboxyltransferase TERM 3872 3535632 - 3535645 + G 90 -9.5 -4.41348 | ATTCGTGCCGGCGGT GCGGG CATT CCCGC TTTCTTTACCGCGAC Shal_2908 3535266 - 3536030 + | 3-oxoacid CoA-transferase, A subunit TERM 3873 3536273 - 3536285 + G 73 -4.1 -4.91109 | overlap 3536267 AACGGTTACCGCGGT TGATG GCG CGTCA TTTTTCTCATCAGCA Shal_2909 3536043 - 3536699 + | 3-oxoacid CoA-transferase, B subunit TERM 3874 3536799 - 3536769 - T 100 -14.2 -3.46647 | opp_overlap 3536774, overlap 3536774 TTGAGCGATTAAACA CAAAACGCAGCTTA ATA TAAGCTGCGTTTTT CCATCTGAGTATTAG TERM 3875 3536774 - 3536794 + T 100 -14.1 -4.71061 | opp_overlap 3536774 3536769 CGATTAAACACAAAA CGCAGCTTA ATA TAAGCTGCG TTTTTCCATCTGAGT TERM 3876 3536794 - 3536774 - T 100 -14.1 -4.82128 | opp_overlap 3536774, overlap 3536769 CGATTAAACACAAAA CGCAGCTTA ATA TAAGCTGCG TTTTTCCATCTGAGT Shal_2910 3539924 - 3536811 - | hydrophobe/amphiphile efflux-1 (HAE1) family protein TERM 3877 3536913 - 3536901 - G 71 -7.7 -3.89334 | overlap 3536891 AAATAGCACAGCAAA TACCG TGC CGGTA AACATGCCACCAAGG Shal_2911 3541094 - 3539958 - | RND family efflux transporter MFP subunit TERM 3878 3540755 - 3540767 + g 82 -7.7 -4.61868 | GCGCCATAGATTGCT CAAGC GCC GCTTG TTTTATCTCTACATC TERM 3879 3541805 - 3541790 - g 72 -3.2 -4.99861 | TATCAAGGACAAAAA CTTGAG CTCA CTCCAG CCTGCTACACCCTGT Shal_2912 3541349 - 3542026 + | two component transcriptional regulator TERM 3880 3542306 - 3542292 - g 72 -5.7 -4.39426 | CACATTTTCAGAAAA CCAAC TACAG GTTGG CCAACATTATTATGC Shal_2913 3542023 - 3543312 + | histidine kinase Shal_2914 3543330 - 3543815 + | hypothetical protein Shal_2915 3544906 - 3543905 - | alpha/beta hydrolase fold Shal_2916 3547127 - 3545109 - | beta-lactamase domain-containing protein Shal_2917 3547270 - 3547818 + | hypothetical protein TERM 3881 3548025 - 3548046 + T 100 -13.1 -5.30616 | opp_overlap 3548025 TCATGAGATAAAAAA TCCGAGAAG CCAA CTTCTCGGA TTTTTATTTAAGTAA TERM 3882 3548046 - 3548025 - T 100 -13.1 -5.39721 | opp_overlap 3548025 TCATGAGATAAAAAA TCCGAGAAG CCAA CTTCTCGGA TTTTTATTTAAGTAA Shal_2918 3549460 - 3548075 - | nitrite reductase (cytochrome; ammonia-forming) Shal_2919 3549845 - 3550285 + | hypothetical protein TERM 3883 3550871 - 3550850 - T 100 -10.2 -5.39721 | opp_overlap 3550850 3550849 TCATGACATAAAAAA TCCGGGAA GCTAAA TTCCCGGA CTTTATAGCGTAATA TERM 3884 3550850 - 3550871 + T 75 -10.2 -2.93869 | opp_overlap 3550850, overlap 3550849 TCATGACATAAAAAA TCCGGGAA GCTAAA TTCCCGGA CTTTATAGCGTAATA Shal_2920 3552280 - 3550898 - | nitrite reductase (cytochrome; ammonia-forming) TERM 3885 3552103 - 3552141 + g 100 -13.4 -5.03747 | opp_overlap 3552099 TAACTAAATTAGGAT CCGCAGAGAGTAAA TTTGTCGCCTC TTTACTCTCTGCGG TTTTTTCCCAACTTT TERM 3886 3552343 - 3552359 + H 79 -10.9 -3.1876 | GACATGTTGTAATCC CCCCATT TTT AATGGGG TTCATAAGTAGACTT Shal_2921 3552882 - 3553187 + | hypothetical protein Shal_2922 3553614 - 3553267 - | endoribonuclease L-PSP Shal_2923 3553804 - 3554295 + | hypothetical protein TERM 3887 3554323 - 3554346 + T 100 -12.5 -4.90906 | opp_overlap 3554323 CTGCGCAAATAAAAA GCCCGCAAA CTTTCA TTTGCGGGC TTTTTGCTATTATCG TERM 3888 3554346 - 3554323 - T 100 -13.2 -5.27335 | opp_overlap 3554323 CTGCGCAAATAAAAA GCCCGCAAAC TTTC ATTTGCGGGC TTTTTGCTATTATCG Shal_2924 3555136 - 3554396 - | cytoplasmic chaperone TorD family protein TERM 3889 3554457 - 3554436 - G 87 -9.5 -4.1964 | GGCAACACCTGAAAA TCTTGCTGC AGTT GCAACAAGA AGTCTGTGGTTAGCA TERM 3890 3555156 - 3555173 + r 83 -12.7 -2.75818 | opp_overlap 3555156 3555151, overlap 3555153 TACCTTACAAGCTAA GCGGGCT ATCA AGCCCGC TGCTGTTGCACTATT TERM 3891 3555173 - 3555156 - R 85 -12.7 -3.2375 | opp_overlap 3555153 3555156, overlap 3555151 TACCTTACAAGCTAA GCGGGCT ATCA AGCCCGC TGCTGTTGCACTATT TERM 3892 3555215 - 3555231 + r 73 -9.5 -3.17901 | ATACTTAACCTTTAG CTGAAGT TAT ACTTCAG TTGGGTTAAGGATAT Shal_2925 3555886 - 3555221 - | dimethylsulfoxide reductase chain B Shal_2926 3558423 - 3555901 - | anaerobic dimethyl sulfoxide reductase subunit A TERM 3893 3556892 - 3556910 + g 75 -9.6 -3.57883 | opp_overlap 3556892 3556890 3556888 GACACGATGAATAGA TCTTCTGC GGT GCGGAAGA TTTCAGCCGTATTGT TERM 3894 3558370 - 3558398 + g 72 -5.3 -4.58283 | gap 1, overlap 3558372 3558373 ATTACAGCCGGTAAC TG-TTGCTGCGC AGCCCA GCGCAGCACTCA TTTTTAAGAAACTTC TERM 3895 3558373 - 3558394 + g 76 -11.6 -2.53903 | overlap 3558372 3558370 ACAGCCGGTAACTGT TGCTGCGC AGCCCA GCGCAGCA CTCATTTTTAAGAAA Shal_2927 3560487 - 3558463 - | outer membrane protein Shal_2928 3561443 - 3560505 - | cytochrome C family protein TERM 3896 3561571 - 3561581 + H 70 -5.4 -4.4078 | AATAGTGACTTGAGG CTTG CAG CAAG TTTTCGTTAAAAGCG Shal_2929 3562136 - 3562597 + | isoprenylcysteine carboxyl methyltransferase family protein TERM 3897 3562741 - 3562710 - T 70 -3.6 -4.98436 | overlap 3562704 GTAATACCACAAAAA TTGCCCCAGAGTGC GCGC ACAGTTAGGGGCAA CTCCTGTCAAAACGG Shal_2930 3564284 - 3562809 - | hypothetical protein TERM 3898 3564962 - 3564982 + G 70 -5.3 -4.39386 | opp_overlap 3564943, overlap 3564963 TCCGTTATGGCCTAT GGGCAAACG CCC CGCTTGCCA TTTTGATCCTTTACC Shal_2931 3564721 - 3565032 + | hypothetical protein Shal_2932 3565074 - 3565775 + | hypothetical protein Shal_2933 3565778 - 3566677 + | hypothetical protein Shal_2934 3566699 - 3567667 + | hypothetical protein Shal_2935 3567657 - 3567923 + | hypothetical protein TERM 3899 3568122 - 3568094 - T 73 -8.3 -3.73982 | overlap 3568091 TTTATACGAAGAGAA TCAGCTCATAGAG TGA CTCTATAAACTAA ATGAACGGGTTGCTT Shal_2936 3569122 - 3568145 - | hypothetical protein Shal_2937 3569746 - 3569399 - | hypothetical protein TERM 3900 3569937 - 3569960 + r 83 -9.6 -3.86571 | opp_overlap 3569942, overlap 3569942 GGATTAAAGGAAACA AAAAACGGGC TAAT GCCCGTTTTA TATTGTTTTATTTGC TERM 3901 3569955 - 3569942 - R 100 -9.5 -5.74086 | opp_overlap 3569937 3569942 AAAGGAAACAAAAAA CGGGC TAAT GCCCG TTTTATATTGTTTTA TERM 3902 3569942 - 3569955 + r 93 -9.5 -4.88288 | opp_overlap 3569942, overlap 3569937 AAAGGAAACAAAAAA CGGGC TAAT GCCCG TTTTATATTGTTTTA Shal_2938 3570601 - 3570035 - | LemA family protein Shal_2939 3571982 - 3570720 - | hypothetical protein Shal_2940 3573336 - 3571969 - | hypothetical protein TERM 3903 3573717 - 3573693 - R 93 -10.8 -5.17353 | opp_overlap 3573691 3573689 3573693 ATAGGCATTAAAAAA GGCTAACACC TTGAC AGTGTTAGCC TCTCTTATCCTCTAG TERM 3904 3573693 - 3573717 + r 75 -10.1 -3.2178 | opp_overlap 3573693, overlap 3573691 3573689 ATAGGCATTAAAAAA GGCTAACAC CTTGACA GTGTTAGCC TCTCTTATCCTCTAG Shal_2941 3574323 - 3573745 - | thymidine kinase TERM 3905 3574986 - 3574968 - g 73 -7.4 -4.11484 | overlap 3574970 GGCAACGTTTGAAAA TACCATCG TGG CGATGGAA AAAAGTGGCGAACTG TERM 3906 3574984 - 3574970 - g 75 -10 -3.6543 | overlap 3574968 CAACGTTTGAAAATA CCATCG TGG CGATGG AAAAAAGTGGCGAAC Shal_2942 3574702 - 3576837 + | peptidyl-dipeptidase Dcp TERM 3907 3576937 - 3576956 + T 100 -12.2 -5.626 | opp_overlap 3576937 CCTGAAAACAAAAAA TCCGCTCT TAAT AGAGCGGA TTTTTTTATCGAATG TERM 3908 3576956 - 3576937 - T 100 -12.2 -5.79595 | opp_overlap 3576937 CCTGAAAACAAAAAA TCCGCTCT TAAT AGAGCGGA TTTTTTTATCGAATG Shal_2943 3578626 - 3577046 - | Na+/H+ antiporter NhaC TERM 3909 3578778 - 3578758 - R 93 -9.9 -5.1244 | opp_overlap 3578757 TCATTAATATAAAAA TTCTTATCT TCC AGATAAGAA ATACTATGGCAGTGC TERM 3910 3579011 - 3578972 - R 100 -18.1 -5.07275 | opp_overlap 3578977, overlap 3578974 TGACAGACATAAAAA CATAAGCGGCTTTAGGG ATGCTA CCCTAAAGCCGCTTATC GTGACACAGATCACC TERM 3911 3579009 - 3578974 - R 100 -20.7 -4.15325 | opp_overlap 3578977, overlap 3578972 ACAGACATAAAAACA TAAGCGGCTTTAGGG ATGCTA CCCTAAAGCCGCTTA TCGTGACACAGATCA TERM 3912 3578977 - 3579006 + r 100 -18 -3.40403 | opp_overlap 3578974 3578972 GACATAAAAACATAA GCGGCTTTAGGG ATGCTA CCCTAAAGCCGC TTATCGTGACACAGA Shal_2944 3580047 - 3579124 - | electron transfer flavoprotein alpha subunit Shal_2945 3580796 - 3580047 - | electron transfer flavoprotein alpha/beta-subunit Shal_2946 3581142 - 3581534 + | histone family protein nucleoid-structuring protein H-NS TERM 3913 3581557 - 3581575 + F 100 -7.4 -5.54079 | opp_overlap 3581557 3581556 TCTACCAACTAAAAG CCCTGC TATACAT GCAGGG TTTTTTCGTTTTTAA TERM 3914 3581911 - 3581878 - g 77 -3.3 -5.16681 | overlap 3581883 3581905 TTAAAAACAATAAAA TTAAAGAGATCATTA AAGA TAATGATATCCCCAA GGGAGCATTAGAAAT TERM 3915 3582067 - 3582038 - g 70 -5 -4.54205 | gap 1 AGTATATGAAATAAA GCGC-ATCGGTGG TAATG CCAGCAATGGCGC AATACACTCACAAAT TERM 3916 3584659 - 3584649 - g 71 -6.8 -4.07133 | overlap 3584656 GATGCCCATAAACAA GGTG AAA CACC GATGGAGTTAACCGA Shal_2947 3581694 - 3584738 + | amidohydrolase Shal_2948 3584741 - 3586135 + | hypothetical protein TERM 3917 3586179 - 3586195 + F 86 -4.4 -5.5112 | opp_overlap 3586179, overlap 3586172 CTAAACCGTGAAAAA GTGTTC TTTAT GAGCAC TTTTTTATTGATGGC Shal_2949 3586274 - 3586657 + | putative lipoprotein TERM 3918 3586778 - 3586789 + G 74 -7.2 -4.26351 | CCAGGTTTAGTGAGT GCCG CCCG CGGC TTTGTTGAGTTAGTC TERM 3919 3586961 - 3586942 - g 77 -7 -4.4078 | CGGTGGTAACGAAAA GCTCGGCG TATT CGCCACGC GTTCAACCTTCAGAC Shal_2950 3586685 - 3587458 + | hypothetical protein Shal_2951 3587468 - 3588100 + | hexapaptide repeat-containing transferase TERM 3920 3589138 - 3589127 - g 70 -2.2 -4.92239 | overlap 3589129 TGAAAAACGTAAAAA GAGA CTAC CCTC TAGCCATTATTATGC TERM 3921 3589412 - 3589387 - g 82 -11.9 -3.32844 | overlap 3589398 TGGGGTATGTTAGAA GCGGGTAAGAA GGGC CTCCTACCCGC GAAGCTATCGGCCAC Shal_2952 3588430 - 3589899 + | amino acid permease-associated region TERM 3922 3590020 - 3590002 - T 88 -8.9 -4.62069 | opp_overlap 3590002 TCGTTATCTTAAAAA GCCACTA ACTTG TAGTGGC TTTCTTTAAAATTAA TERM 3923 3590002 - 3590020 + T 86 -8.9 -4.46233 | opp_overlap 3590002 TCGTTATCTTAAAAA GCCACTA ACTTG TAGTGGC TTTCTTTAAAATTAA Shal_2953 3590884 - 3590045 - | LysR family transcriptional regulator TERM 3924 3591120 - 3591132 + G 76 -7.7 -4.31379 | opp_overlap 3591119 ATGAGCACTCAACAC TCTGC TGA GCAGA TTTTAGTCACTTCAT Shal_2954 3591105 - 3592718 + | hypothetical protein TERM 3925 3593061 - 3593076 + G 76 -8.2 -4.07568 | overlap 3593051 3593048 CATTCGCGCGGGCGG CGCGGG CATT CCTGCG TTTTACACAGCCACC Shal_2955 3592720 - 3593430 + | 3-oxoacid CoA-transferase, A subunit TERM 3926 3593543 - 3593568 + G 71 -9.8 -3.14564 | GGATATTCCCGATGG TGCCTATGTC AACTTA GGCATAGGCA TTCCTGAAAAAGTCG Shal_2956 3593427 - 3594122 + | 3-oxoacid CoA-transferase, B subunit Shal_2957 3594184 - 3595590 + | aminotransferase class-III TERM 3927 3596423 - 3596397 - g 77 -9.4 -3.90318 | CCACTATTTGACAAA GGAGCCATCACC GCT GGCAATGCCTCC GGCATCAATGATGGC Shal_2958 3595599 - 3596870 + | beta-ketoadipyl CoA thiolase TERM 3928 3596931 - 3596974 + T 72 -4.4 -4.74084 | opp_overlap 3596942, overlap 3596937 GGAATAGCTGCTCCG TTCACACGCAAGCCATCCTC ATCT GAGGCAGGCTTGCGTTTTCG TTTTCGTTTTCGTTT TERM 3929 3596937 - 3596968 + T 100 -14.4 -4.74084 | opp_overlap 3596942, overlap 3596931 GCTGCTCCGTTCACA CGCAAGCCATCCTC ATCT GAGGCAGGCTTGCG TTTTCGTTTTCGTTT Shal_2959 3598467 - 3597523 - | Nitrilase TERM 3930 3598944 - 3598927 - g 88 -7.7 -4.91473 | opp_overlap 3598927 CAACTCAAAAAGAAA CTCCTGC CAAT GCAGAAG TCGTTAGTCATCAGT TERM 3931 3599304 - 3599323 + G 74 -7.2 -4.371 | gap 1 ATTCAAACCAAGTTC CGT-GACGA AGT TCGTCCACG TTTTGGTGTAATGCG Shal_2960 3598887 - 3600599 + | prolyl-tRNA synthetase TERM 3932 3600663 - 3600636 - f 88 -11.4 -3.56972 | opp_overlap 3600641, overlap 3600641 AGCCCACTAAATTAA TAAAAGCCGATG ACTT CATCGGCTTTTT TTTGCCTGTAATAAA TERM 3933 3600641 - 3600658 + F 100 -11.3 -5.83822 | opp_overlap 3600641 3600636 ACTAAATTAATAAAA GCCGATG ACTT CATCGGC TTTTTTTTGCCTGTA TERM 3934 3600658 - 3600641 - f 95 -11.3 -4.85545 | opp_overlap 3600641, overlap 3600636 ACTAAATTAATAAAA GCCGATG ACTT CATCGGC TTTTTTTTGCCTGTA Shal_2961 3601087 - 3602211 + | patatin Shal_2962 3602926 - 3602204 - | hypothetical protein Shal_2963 3604976 - 3603027 - | potassium efflux system protein TERM 3935 3603893 - 3603913 + g 71 -3.9 -4.77165 | opp_overlap 3603884 3603899, overlap 3603894 TAGATAGCACGGCAA CCATAACCA ATG TGGTACTGG TTTTGTTGTCGAGCA Shal_2964 3605182 - 3606084 + | diguanylate cyclase Shal_2965 3607466 - 3606036 - | tRNA(Ile)-lysidine synthetase Shal_2966 3611001 - 3607468 - | DNA polymerase III subunit alpha Shal_2967 3611722 - 3611111 - | ribonuclease H Shal_2968 3612873 - 3611722 - | lipid-A-disaccharide synthase TERM 3936 3612930 - 3612909 - R 70 -5.8 -4.42806 | TGAGGTGGAAAGAAA GAACCCGC TTTTAC ACGGGCTC TATAACTTGACTAGC Shal_2969 3613711 - 3612941 - | UDP-N-acetylglucosamine acyltransferase Shal_2970 3614169 - 3613708 - | beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Shal_2971 3615223 - 3614207 - | UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Shal_2972 3615734 - 3615228 - | outer membrane chaperone Skp (OmpH) TERM 3937 3615751 - 3615767 + r 78 -2.9 -5.47399 | ACGAACTCCTTTATC TCAGCAG AAC TTGCCGA TTTTTTTCAAATTGA Shal_2973 3618268 - 3615785 - | surface antigen (D15) Shal_2974 3619670 - 3618300 - | putative membrane-associated zinc metalloprotease TERM 3938 3619654 - 3619641 - G 75 -6.7 -4.4846 | TAAGGCAACAATAAA GGAAC CTAG GTTCC ATAAAAAATCGATCA Shal_2975 3620875 - 3619685 - | 1-deoxy-D-xylulose 5-phosphate reductoisomerase TERM 3939 3619760 - 3619791 + g 71 -9.6 -3.26924 | overlap 3619758 3619756 GATATCATCAATACT GTTTAATGGATGCG TCGC CGTATTCATTAAGC TCTGTTCGTTTATTC Shal_2976 3621737 - 3620880 - | phosphatidate cytidylyltransferase Shal_2977 3622558 - 3621758 - | undecaprenyl diphosphate synthase TERM 3940 3622621 - 3622578 - R 79 -6.8 -4.63542 | gap 1, overlap 3622582 3622586 TACAACCCTTAAAAA TAG-ACAAACGCCGTGTAG TATAACT CTACACGGCGTCTGAACTC TAGGGCATGTTGTCC TERM 3941 3622616 - 3622582 - R 100 -16.6 -3.54256 | overlap 3622578 3622586 ACCCTTAAAAATAGA CAAACGCCGTGTAG TATAACT CTACACGGCGTCTG AACTCTAGGGCATGT TERM 3942 3622612 - 3622586 - R 100 -13.8 -4.38876 | overlap 3622582 3622578 TTAAAAATAGACAAA CGCCGTGTAG TATAACT CTACACGGCG TCTGAACTCTAGGGC Shal_2978 3623370 - 3622813 - | ribosome recycling factor TERM 3943 3623098 - 3623123 + g 72 -10.5 -2.84586 | overlap 3623094 CGCACCCGCTGACAT TGGGTTCAGAC CAAG GTCTGAGCTCA TGATTGCCTTTTCAA Shal_2979 3624131 - 3623403 - | uridylate kinase TERM 3944 3624226 - 3624257 + r 80 -10.2 -3.76224 | opp_overlap 3624228 3624231, overlap 3624228 3624231 CAGTTGAGTATATAC GATAAGACCGCAGC AATT GCTACGGTCTTATG TTTGCTAAATAAGGA TERM 3945 3624255 - 3624228 - R 95 -15 -2.71268 | opp_overlap 3624228 3624226 3624231, overlap 3624231 GTTGAGTATATACGA TAAGACCGCAGC AATT GCTACGGTCTTA TGTTTGCTAAATAAG TERM 3946 3624228 - 3624255 + r 90 -12.8 -3.46647 | opp_overlap 3624228 3624231, overlap 3624226 3624231 GTTGAGTATATACGA TAAGACCGCAGC AATT GCTACGGTCTTA TGTTTGCTAAATAAG TERM 3947 3624252 - 3624231 - R 90 -12.3 -3.50492 | opp_overlap 3624231 3624228 3624226, overlap 3624228 GAGTATATACGATAA GACCGCAGC AATT GCTACGGTC TTATGTTTGCTAAAT TERM 3948 3624231 - 3624252 + r 84 -10.1 -3.86653 | opp_overlap 3624228 3624231, overlap 3624228 3624226 GAGTATATACGATAA GACCGCAGC AATT GCTACGGTC TTATGTTTGCTAAAT Shal_2980 3625126 - 3624275 - | elongation factor Ts TERM 3949 3625205 - 3625172 - R 74 -6 -4.46254 | gap 1, opp_overlap 3625174 TCAATAGATAAGAAA CAGGGGC-CAATCAT ATTGA ATGAAAGAGCCCCTG TTCACCAATCATGTA Shal_2981 3625988 - 3625260 - | 30S ribosomal protein S2 TERM 3950 3626151 - 3626139 - H 72 -9.1 -3.29739 | CTTAACTCAGACGAA CCACC TAA GGTGG TAACGACAAGAGTCA TERM 3951 3626543 - 3626577 + G 83 -10.3 -3.73647 | gap 1, opp_overlap 3626564 3626572, overlap 3626542 TGATCGTACATTGGT TGACGGTGATATC-AT CAAC ATCGATATTACCGTCA TTGTTGATGGCTACC TERM 3952 3626799 - 3626777 - g 71 -7 -4.04397 | opp_overlap 3626793 AGGCTTAGAAAAATA CACAATTGTC ACT GACTACTGTG GCCACGGTATTGGTG Shal_2982 3626283 - 3627083 + | methionine aminopeptidase TERM 3953 3627109 - 3627126 + F 93 -11.3 -4.26189 | TTCCACCATCGACGA GGCGTGT ATTA ACACGCC TTTTGCAATTTATGC Shal_2983 3627299 - 3629854 + | PII uridylyl-transferase TERM 3954 3629834 - 3629847 + F 71 -6.7 -4.13225 | opp_overlap 3629826, overlap 3629830 GCTAAATTGCGTGAA GCACT CACC AGTGC TTTATAGATTTTTTT Shal_2984 3629886 - 3630710 + | 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase TERM 3955 3630739 - 3630767 + F 84 -10.4 -3.95836 | opp_overlap 3630739 3630745, overlap 3630745 ATAGTGATACAAATA CAAAAATCCCGC TTCTC GCGGGATTTTTC TTATCTTTTCACAAT TERM 3956 3630767 - 3630739 - f 80 -10.4 -3.63092 | opp_overlap 3630739 3630745, overlap 3630745 ATAGTGATACAAATA CAAAAATCCCGC TTCTC GCGGGATTTTTC TTATCTTTTCACAAT TERM 3957 3630761 - 3630745 - f 100 -9.4 -5.26155 | opp_overlap 3630745 3630739, overlap 3630739 ATACAAATACAAAAA TCCCGC TTCTC GCGGGA TTTTTCTTATCTTTT TERM 3958 3630745 - 3630761 + F 100 -9.4 -5.35365 | opp_overlap 3630739 3630745, overlap 3630739 ATACAAATACAAAAA TCCCGC TTCTC GCGGGA TTTTTCTTATCTTTT Shal_2985 3631186 - 3631530 + | hypothetical protein TERM 3959 3631549 - 3631572 + T 80 -8.2 -4.4078 | opp_overlap 3631549, overlap 3631554 CCCCTTCAGTAAAAA TAACAGAGGC GAAA GCCTCTTTTA TTTTGCTTAAAACAG TERM 3960 3631572 - 3631549 - T 84 -8.2 -4.72272 | opp_overlap 3631549 3631554 CCCCTTCAGTAAAAA TAACAGAGGC GAAA GCCTCTTTTA TTTTGCTTAAAACAG TERM 3961 3631554 - 3631567 + T 91 -8.1 -5.18643 | opp_overlap 3631549, overlap 3631549 TCAGTAAAAATAACA GAGGC GAAA GCCTC TTTTATTTTGCTTAA Shal_2986 3632432 - 3631599 - | formyltetrahydrofolate deformylase TERM 3962 3632751 - 3632725 - R 100 -10.3 -5.56372 | gap 1, opp_overlap 3632725 AAATTAAAACAAAAA TGGCTA-AGCCA TGAG TGGCTGTAGCCA TTATCACGAGTAGAT TERM 3963 3632725 - 3632751 + r 77 -10.3 -3.30243 | gap 1, opp_overlap 3632725 AAATTAAAACAAAAA TGGCTA-AGCCA TGAG TGGCTGTAGCCA TTATCACGAGTAGAT Shal_2987 3633242 - 3632778 - | flavodoxin TERM 3964 3633323 - 3633299 - R 77 -8.7 -3.92373 | opp_overlap 3633301, overlap 3633301 TACTGTACCGACAAA CATTGCTGCAA GCT TTACAGCAATA TTGAAGTGATAGCTA TERM 3965 3633321 - 3633301 - R 74 -9.1 -3.5511 | opp_overlap 3633301, overlap 3633299 CTGTACCGACAAACA TTGCTGCAA GCT TTACAGCAA TATTGAAGTGATAGC Shal_2988 3634410 - 3633571 - | pseudouridine synthase Shal_2989 3634752 - 3634432 - | hypothetical protein Shal_2990 3635027 - 3636040 + | hypothetical protein Shal_2991 3636037 - 3636432 + | hypothetical protein TERM 3966 3636468 - 3636502 + T 95 -14.2 -2.99449 | opp_overlap 3636468 3636473, overlap 3636473 AAGACGTATAAAGAA GTAAAGGCGCGACCCC AGA GGAGACGCGCCTTTTC TATCATTGTGTAAGC TERM 3967 3636502 - 3636468 - T 100 -16.4 -4.10791 | opp_overlap 3636468 3636473, overlap 3636473 AAGACGTATAAAGAA GTAAAGGCGCGACCCC AGA GGAGACGCGCCTTTTC TATCATTGTGTAAGC TERM 3968 3636497 - 3636473 - T 100 -14.9 -4.18044 | opp_overlap 3636473 3636468, overlap 3636468 GTATAAAGAAGTAAA GGCGCGACCCC AGA GGAGACGCGCC TTTTCTATCATTGTG TERM 3969 3636473 - 3636497 + T 100 -12.7 -4.63007 | opp_overlap 3636468 3636473, overlap 3636468 GTATAAAGAAGTAAA GGCGCGACCCC AGA GGAGACGCGCC TTTTCTATCATTGTG TERM 3970 3637125 - 3637104 - T 100 -15.9 -4.55295 | opp_overlap 3637118 TCCTTTATAAAGAAA GGGCGTACC AATC GGTACGCCC CAGTACTACTTTATT Shal_2992 3637930 - 3637631 - | membrane protein-like protein TERM 3971 3637705 - 3637715 + g 90 -6.8 -5.40072 | opp_overlap 3637704 3637705 AAGGATACTTAAAAG TCGC TGG GCGA TTTTTTTCAAAAACA Shal_2993 3638546 - 3637923 - | GCN5-related N-acetyltransferase TERM 3972 3638397 - 3638408 + g 73 -2.2 -5.19251 | gap 1, overlap 3638396 3638397 CAATTCCTCTCGAAT C-GCG CCG CGCAG TTTTTGTTCGTATTG Shal_2994 3638749 - 3638982 + | hypothetical protein Shal_2995 3639395 - 3639003 - | hypothetical protein Shal_2996 3639534 - 3639902 + | hypothetical protein Shal_2997 3639889 - 3640662 + | hypothetical protein TERM 3973 3640704 - 3640725 + T 100 -11.7 -5.19328 | opp_overlap 3640704 CGTCCTCATAAAAAA TGGCTCAAT GAAT ATTGAGCCA TTTTTGTTATCGCAT TERM 3974 3640725 - 3640704 - T 100 -11.7 -5.24129 | opp_overlap 3640704 CGTCCTCATAAAAAA TGGCTCAAT GAAT ATTGAGCCA TTTTTGTTATCGCAT Shal_2998 3641394 - 3640753 - | SecY interacting protein Syd Shal_2999 3641439 - 3642311 + | 7-cyano-7-deazaguanine reductase TERM 3975 3642348 - 3642370 + T 85 -4 -5.56673 | opp_overlap 3642348 AAAGAAAACAAAAAA CGGGTCAGAG TGT CATTAACCCG TTTTTTATTATAAAT TERM 3976 3642370 - 3642348 - T 90 -4 -5.95449 | opp_overlap 3642348 AAAGAAAACAAAAAA CGGGTCAGAG TGT CATTAACCCG TTTTTTATTATAAAT TERM 3977 3642425 - 3642400 - T 89 -4.7 -5.60993 | TTTCGGACAAAAAAA CTCCCATCAGC GATA ACCAATGAGAG AGTGAGAGAGCGCTG Shal_3000 3643353 - 3642538 - | hypothetical protein TERM 3978 3643407 - 3643377 - R 79 -9 -3.80855 | overlap 3643380 GCTCTCAAAAATCAA TCACGTCTGCCCCA AAG TGAGGCAGACAAAA GGTGTACCTAGATTC TERM 3979 3643404 - 3643380 - R 91 -12.9 -2.9838 | overlap 3643377 CTCAAAAATCAATCA CGTCTGCCCCA AAG TGAGGCAGACA AAAGGTGTACCTAGA TERM 3980 3643500 - 3643527 + r 70 -7.8 -3.75295 | gap 1, opp_overlap 3643494 TTGACTTAATAGCCT GTCGTTGAGCTTG TGA CAAGCT-ATCGAC TTTAGGTGCTTTATC Shal_3001 3644116 - 3643541 - | hypothetical protein Shal_3002 3645493 - 3644588 - | LysR family transcriptional regulator Shal_3003 3646486 - 3645584 - | LysR family transcriptional regulator TERM 3981 3645612 - 3645632 + g 72 -6.1 -4.2679 | TTTAGTATCGTATTT CTCAACCAA ATA TTGGCTGGG TTTTGCTCGAGCTTA Shal_3004 3646686 - 3648671 + | beta-lactamase domain-containing protein TERM 3982 3648734 - 3648704 - T 100 -18.4 -2.87344 | opp_overlap 3648709, overlap 3648709 TACTCTGTTTACAGA CAAAACGGGGCGCA TGA TGCGCCCCGTTTTT TATTATTCGCTGTTA TERM 3983 3648729 - 3648709 - T 100 -18.3 -4.60797 | opp_overlap 3648709, overlap 3648704 TGTTTACAGACAAAA CGGGGCGCA TGA TGCGCCCCG TTTTTTATTATTCGC TERM 3984 3648709 - 3648729 + T 100 -18.3 -5.64873 | opp_overlap 3648709 3648704 TGTTTACAGACAAAA CGGGGCGCA TGA TGCGCCCCG TTTTTTATTATTCGC Shal_3005 3649720 - 3648764 - | 4'-phosphopantetheinyl transferase Shal_3006 3651863 - 3649836 - | elongation factor G TERM 3985 3650362 - 3650344 - G 86 -8.8 -4.39571 | overlap 3650346 CTGACAAACTCAAAA CCTTGGCC ACG GGCCAACG GCTCAACCATCAACT TERM 3986 3653082 - 3653050 - g 72 -4.7 -4.68655 | overlap 3653053 3653056 3653059 TAAGCCTAAAACAAA CAACAAGACGCCTGA CAC TCAGGCACCCAGCGG AGACTCATAATGAGC TERM 3987 3653079 - 3653053 - g 77 -7.2 -4.43397 | overlap 3653050 3653056 3653059 GCCTAAAACAAACAA CAAGACGCCTGA CAC TCAGGCACCCAG CGGAGACTCATAATG TERM 3988 3653076 - 3653056 - g 87 -9.7 -4.30308 | overlap 3653053 3653050 3653059 TAAAACAAACAACAA GACGCCTGA CAC TCAGGCACC CAGCGGAGACTCATA Shal_3007 3652226 - 3653092 + | transcriptional regulator, putative TERM 3989 3653288 - 3653273 - g 72 -5.4 -4.44915 | TAATCAGCGAGAAAA TCGATG CCAT CACCGA ATTGCCATCGACTCA TERM 3990 3653575 - 3653561 - g 72 -2.8 -5.00616 | GCGGCGGTCAAAAAA TTAGCC ACA GCCTAA CGGCACGACTACAGT TERM 3991 3654163 - 3654127 - g 72 -5.9 -4.43309 | gap 1 GAAGGTCAAGCAAAA GCGCTAAACCGTGCCT ATGATG ACGCA-GGTTTTGCGC CGCACACTCTAGGGC TERM 3992 3655232 - 3655220 - g 70 -9.1 -3.33696 | opp_overlap 3655230 GCTTTGGTGAACTAA GCGCA TTA TGCGC CGCAGGCGTGATCTC TERM 3993 3659377 - 3659354 - g 70 -5.2 -4.41494 | opp_overlap 3659354 CAGGTTTAACCAAAA CCCTAAGCCA TGAA TGGCCTGAGG TTTTCTGCCGCGCAC TERM 3994 3660592 - 3660552 - g 100 -17.8 -3.62176 | opp_overlap 3660544, overlap 3660542 3660577 3660582 AACAAGAGCCTTAAA CCCTAATGCGATGGTCTT TATCC AAGACCACCGCATTAGCG GTAACCCTGTGCTCC Shal_3008 3653092 - 3661389 + | polyketide-type polyunsaturated fatty acid synthase, PfaA TERM 3995 3661491 - 3661456 - g 70 -10.5 -2.57244 | opp_overlap 3661460, overlap 3661460 TCAGTGATCAAGTTA TCAAGAGTGAGATGC CACTGC GCATCGCACTCTTGG TGCTACCTACGCCAC TERM 3996 3661460 - 3661487 + G 71 -9.9 -3.22298 | opp_overlap 3661456 3661460 TGATCAAGTTATCAA GAGTGAGATGC CACTGC GCATCGCACTC TTGGTGCTACCTACG TERM 3997 3661487 - 3661460 - g 71 -9.9 -3.22884 | opp_overlap 3661460, overlap 3661456 TGATCAAGTTATCAA GAGTGAGATGC CACTGC GCATCGCACTC TTGGTGCTACCTACG TERM 3998 3662112 - 3662098 - g 70 -10 -3.01125 | overlap 3662095 ACGCTTCACAAAGCA GCTCAG CGG CTGAGC CAACAGCAAACTGTA TERM 3999 3663555 - 3663545 - g 74 -8.2 -3.92746 | overlap 3663543 TTTACCTCAAAAAGA CGCC GCG GGCG CTTGCACTGTCCCCG Shal_3009 3661389 - 3663773 + | PfaB family protein TERM 4000 3663806 - 3663795 - g 89 -4.4 -5.71712 | overlap 3663799 CTTCAGATAAAAAAA TACC CGCA GGTA TGCAAAGCAAGATCG TERM 4001 3663906 - 3663896 - g 74 -8.2 -3.9009 | AACTTACTCGATAAA CGCG ACT CGCG CACAACCCTCACTAA TERM 4002 3664284 - 3664268 - g 71 -9.5 -3.17956 | AAATTAGGTCATCAA GGGTTTA AGC TAAACCC AACCAATGCTCACAC TERM 4003 3666892 - 3666863 - g 73 -10.7 -3.10409 | overlap 3666854 CAGCAACTGACTCAA GCGGCTCACCAAG CATT CTTAGAAAGCCGC TCAGCAGGTATGAAG Shal_3010 3663773 - 3669652 + | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ TERM 4004 3669698 - 3669726 + F 72 -4.6 -4.73388 | gap 1, opp_overlap 3669698 ATTTCTGTGTCAAAA GTGCTCA-CCTAT ATTC ATAGGCTGCGCGC TTTTTCCTAGAAATT TERM 4005 3669878 - 3669866 - f 73 -7.7 -3.82525 | TAAAAGAATAGATAA GAGCT GAT AGCTC AAATAATTAAGGGTC TERM 4006 3671508 - 3671483 - g 72 -9.1 -3.57561 | gap 1, overlap 3671484 GCCCAAGGCGTTAAA TTGCCAACGCAG CTA CTGCGCTGG-AA GCCGAGCCAAAGAAT TERM 4007 3671508 - 3671484 - g 71 -10.7 -2.74322 | overlap 3671483 CCCAAGGCGTTAAAT TGCCAACGCAG CTA CTGCGCTGGAA GCCGAGCCAAAGAAT Shal_3011 3669902 - 3671530 + | PfaD family protein TERM 4008 3671570 - 3671591 + T 100 -11.7 -4.89567 | opp_overlap 3671570 TATTAAGCCATCAAA GCCACTAAT CTTC ATTAGTGGC TTTTCTATTTTGACA TERM 4009 3671591 - 3671570 - T 91 -11.7 -3.80114 | opp_overlap 3671570 TATTAAGCCATCAAA GCCACTAAT CTTC ATTAGTGGC TTTTCTATTTTGACA TERM 4010 3671922 - 3671962 + T 85 -4.1 -5.69262 | gap 1, opp_overlap 3671922, overlap 3671934 CAAGCTAAAGAAAAA GCCACCGAACAGCTCTTA TTTAAC TAAGAGAT-TCTGGTGGC TTTTTGTTTTTCTAC TERM 4011 3671962 - 3671922 - T 78 -4.1 -5.33026 | gap 1, opp_overlap 3671922 3671934 CAAGCTAAAGAAAAA GCCACCGAACAGCTCTTA TTTAAC TAAGAGATTCT-GGTGGC TTTTTGTTTTTCTAC Shal_3012 3672835 - 3672032 - | hypothetical protein TERM 4012 3673117 - 3673091 - H 95 -13 -3.54424 | GCTCAGGGTGTTAAA CTGCCAGCACAG CTA CTGCGCTGGAAG CCAACTCAAAGAATG TERM 4013 3673248 - 3673205 - H 73 -5.4 -4.60808 | opp_overlap 3673216, overlap 3673216 TTATAAAAAGACAAA CCAACCTAAAAGCCACTCAT CTTC ATTAGTGGCTTTTTTATTGA TGACTATTTTACAAA TERM 4014 3673216 - 3673237 + H 93 -7.3 -5.5112 | opp_overlap 3673205 3673216 CAAACCAACCTAAAA GCCACTCAT CTTC ATTAGTGGC TTTTTTATTGATGAC TERM 4015 3673237 - 3673216 - H 78 -7.3 -4.33808 | opp_overlap 3673216, overlap 3673205 CAAACCAACCTAAAA GCCACTCAT CTTC ATTAGTGGC TTTTTTATTGATGAC TERM 4016 3674534 - 3674520 - g 74 -5.6 -4.61147 | opp_overlap 3674519 3674520, overlap 3674508 3674522 CAAGAGCAGACAAAA CAGCTC AAC GAGCAG GTTTATATCGATAAA TERM 4017 3674978 - 3674991 + G 71 -9.5 -3.24329 | opp_overlap 3674967 3674977, overlap 3674975 TAACGCAGATATTAT CGGCC GTCA GGCCG TGTTACTTGCCGATA Shal_3013 3673383 - 3675116 + | diguanylate cyclase Shal_3014 3675319 - 3675867 + | hypothetical protein TERM 4018 3675958 - 3675992 + T 100 -13.1 -3.81689 | opp_overlap 3675953 3675963 3675985, overlap 3675960 3675963 CTGTAACAAACTCGC CATAATGCTCTCCTT AAACA AAGGAGAGCATTATC TTTAATAATACTGTT TERM 4019 3675960 - 3675990 + T 100 -15.7 -3.48738 | opp_overlap 3675953 3675963 3675985, overlap 3675958 3675963 GTAACAAACTCGCCA TAATGCTCTCCTT AAACA AAGGAGAGCATTA TCTTTAATAATACTG TERM 4020 3675963 - 3675987 + T 100 -13 -3.87323 | opp_overlap 3675953 3675963 3675985, overlap 3675960 3675958 ACAAACTCGCCATAA TGCTCTCCTT AAACA AAGGAGAGCA TTATCTTTAATAATA TERM 4021 3675987 - 3675963 - T 93 -13 -3.32562 | opp_overlap 3675963 3675960 3675958, overlap 3675953 3675985 ACAAACTCGCCATAA TGCTCTCCTT AAACA AAGGAGAGCA TTATCTTTAATAATA Shal_3015 3678337 - 3676025 - | penicillin amidase Shal_3016 3678575 - 3678826 + | hypothetical protein TERM 4022 3679173 - 3679197 + F 71 -7.1 -3.85817 | overlap 3679176 GACCCCTTCTTAGCC GAGTGTGAGCT GGA GGCTCACGATC TTTATCAAACGAAGT TERM 4023 3679202 - 3679216 + F 71 -7.2 -3.93061 | opp_overlap 3679207, overlap 3679207 GGCTCACGATCTTTA TCAAAC GAA GTTTGA TTTCGCTTTTAGAGT Shal_3017 3679423 - 3680733 + | DEAD/DEAH box helicase domain-containing protein TERM 4024 3680782 - 3680799 + F 90 -11.3 -3.7941 | ACTAACTTTCTGCTA GCGGCTT GTTA AAGCCGC TTATTCTACAGCCTG TERM 4025 3680852 - 3680871 + F 72 -8.6 -3.57144 | opp_overlap 3680852 TTACTGCCATACAAA GCGGCTTA ACGC TAAGCTGC TTTCCCACTCCGCAA TERM 4026 3682063 - 3682050 - g 100 -9.5 -4.78107 | GACTATCATCAAAAA GCGGG CTAC CCCGC GGGTCAAGTCATTGC Shal_3018 3681057 - 3682247 + | hypothetical protein Shal_3019 3683653 - 3682322 - | amidohydrolase TERM 4027 3683803 - 3683782 - H 90 -13.1 -2.75712 | overlap 3683779 GTATTGAGTTAATCA TGCCAAGAG GAGA CTCTTGGCA GCAAAGGGTAACAAC Shal_3020 3684040 - 3686328 + | TonB-dependent heme/hemoglobin receptor family protein TERM 4028 3686391 - 3686346 - T 100 -26.7 -2.79183 | opp_overlap 3686354 3686361, overlap 3686349 3686361 CGTAGCTTGATGATA TAACCCAATAAAAAATGCAGC CTAG GCTGCATTTTTTATTGGGTTA AAATCACGCTGAGTC TERM 4029 3686388 - 3686349 - T 100 -24 -3.54653 | opp_overlap 3686354 3686361, overlap 3686346 3686361 AGCTTGATGATATAA CCCAATAAAAAATGCAGC CTAG GCTGCATTTTTTATTGGG TTAAAATCACGCTGA TERM 4030 3686354 - 3686383 + T 100 -15.3 -3.18274 | opp_overlap 3686349 3686346 3686361, overlap 3686361 GATGATATAACCCAA TAAAAAATGCAGC CTAG GCTGCATTTTTTA TTGGGTTAAAATCAC TERM 4031 3686361 - 3686376 + T 95 -9 -5.5074 | opp_overlap 3686361 3686349 3686346, overlap 3686354 TAACCCAATAAAAAA TGCAGC CTAG GCTGCA TTTTTTATTGGGTTA TERM 4032 3686376 - 3686361 - T 95 -9 -5.5074 | opp_overlap 3686354 3686361, overlap 3686349 3686346 TAACCCAATAAAAAA TGCAGC CTAG GCTGCA TTTTTTATTGGGTTA Shal_3021 3688850 - 3686418 - | TonB-dependent receptor plug TERM 4033 3687138 - 3687126 - G 85 -5.5 -5.4505 | GTGGTTAACAAAAAA CGACA AAT CGTCG GTTGGCATGTAAGTC TERM 4034 3689556 - 3689570 + r 81 -11.4 -3.04263 | TCTCCCATAGCCAGA GCACCG TAT CGGTGC TATTGCCGATAACAT Shal_3023 3690648 - 3689779 - | hypothetical protein Shal_3024 3691872 - 3692192 + | peptidase Shal_3025 3692309 - 3692998 + | two component transcriptional regulator Shal_3026 3692979 - 3694538 + | histidine kinase Shal_3027 3694636 - 3695985 + | hypothetical protein TERM 4035 3696109 - 3696138 + T 76 -10.8 -2.74515 | opp_overlap 3696109, overlap 3696113 3696116 3696136 ATTAACCAACAAAAA CTAAGAACCCAG CACAAA CTGGGTTCTTTG CTTTAAAAGCTATTT TERM 4036 3696138 - 3696109 - T 100 -11.5 -5.20534 | opp_overlap 3696109 3696113 3696116 3696136 ATTAACCAACAAAAA CTAAGAACCCAGC ACAA ACTGGGTTCTTTG CTTTAAAAGCTATTT TERM 4037 3696113 - 3696134 + T 86 -10.2 -4.06055 | opp_overlap 3696109, overlap 3696109 3696116 ACCAACAAAAACTAA GAACCCAG CACAAA CTGGGTTC TTTGCTTTAAAAGCT TERM 4038 3696116 - 3696131 + T 71 -6.1 -4.15396 | opp_overlap 3696109, overlap 3696113 3696109 AACAAAAACTAAGAA CCCAG CACAAA CTGGG TTCTTTGCTTTAAAA Shal_3028 3697731 - 3696352 - | serine/threonine protein kinase Shal_3029 3698647 - 3697883 - | hypothetical protein TERM 4039 3698734 - 3698749 + r 83 -9 -4.0127 | overlap 3698744 AGCTATCCAAAATTT GCTTGC TTAT GCAAGC TTTGCTTGTAGATCT Shal_3030 3698901 - 3698740 - | hypothetical protein Shal_3031 3699113 - 3699340 + | hypothetical protein TERM 4040 3699363 - 3699403 + T 100 -12.1 -5.17054 | gap 1, opp_overlap 3699368, overlap 3699368 CTCTCTTTCTCAATA AAAAATGGCTGC-CAGCA TTAATC TGCTGTGCAGCCATTTTA TTTTTTGCGTGTTAT TERM 4041 3699398 - 3699368 - T 100 -12 -5.4505 | gap 1, opp_overlap 3699363 3699368 TTTCTCAATAAAAAA TGGCTGC-CAGCA TTAATC TGCTGTGCAGCCA TTTTATTTTTTGCGT TERM 4042 3699368 - 3699398 + T 100 -12 -5.43553 | gap 1, opp_overlap 3699368, overlap 3699363 TTTCTCAATAAAAAA TGGCTGC-CAGCA TTAATC TGCTGTGCAGCCA TTTTATTTTTTGCGT Shal_3032 3700257 - 3699487 - | hypothetical protein TERM 4043 3699617 - 3699582 - G 76 -7.7 -4.26344 | gap 1 AGAGGGTCACGAAAA TCGCCACCGAG-ATCA CCAGC TGATACTTGATGGCGA TCAGCGGATCGACGC Shal_3033 3700477 - 3701700 + | peptidase T TERM 4044 3701721 - 3701749 + F 100 -12.5 -5.80003 | opp_overlap 3701724 3701727 ACTGTGATTGAGTCA TAACAAGGTCTGC CCT GCTGGCCTTGTTA TTTTTTCTTTATTCG TERM 4045 3701802 - 3701790 - f 79 -4.9 -5.1101 | opp_overlap 3701790 TTACTAGCTAAAAAA CAAAT AGT ATTTG CTTCCTTTGGCACAC Shal_3034 3701859 - 3702551 + | nucleoside-diphosphate-sugar epimerase Shal_3035 3702680 - 3703447 + | hypothetical protein Shal_3036 3703523 - 3704092 + | NUDIX hydrolase TERM 4046 3704160 - 3704137 - T 91 -11.1 -4.62783 | TAGCTAGGCCAAAAA CGCGTGAAT TAACCT ATTCACGCG CTAATGACGACTCTC Shal_3037 3704542 - 3704150 - | hypothetical protein TERM 4047 3704757 - 3704742 - R 100 -10.4 -5.92399 | opp_overlap 3704739 GAATAAAATAAAAAA GGGAGC TTCT GCTCCC TCCTGGTTTCAAATC Shal_3038 3706095 - 3704866 - | sodium/glutamate symporter TERM 4048 3704959 - 3704947 - G 70 -4.7 -4.52415 | AGGTACAATAATAAA GGCTC TAT GCGCC GCACCATACTGCTGA TERM 4049 3706158 - 3706143 - H 73 -6.8 -4.2243 | opp_overlap 3706143 AGAAATAGCTGAAAA GAGAGG TTCC CCCCTC TTGCTGCCGAATACC Shal_3039 3706687 - 3707955 + | sodium:dicarboxylate symporter TERM 4050 3708008 - 3708035 + T 90 -11.4 -4.10159 | opp_overlap 3708014, overlap 3708014 ATAAGAGCTTAAATG AAAAAAGGCACC GCAA GGTGCCTTTTTA TTTACTTTGAATCTT TERM 4051 3708014 - 3708029 + T 100 -10.4 -5.41941 | opp_overlap 3708014, overlap 3708008 GCTTAAATGAAAAAA GGCACC GCAA GGTGCC TTTTTATTTACTTTG TERM 4052 3708029 - 3708014 - T 100 -10.4 -5.37593 | opp_overlap 3708014 3708008 GCTTAAATGAAAAAA GGCACC GCAA GGTGCC TTTTTATTTACTTTG Shal_3040 3708968 - 3708054 - | indigoidine synthase A family protein Shal_3041 3710053 - 3708962 - | ribokinase-like domain-containing protein TERM 4053 3710090 - 3710104 + r 90 -8.6 -4.90525 | opp_overlap 3710081 GCCAAACAAACATTT GTTTGG ATA CCAAAC TTTTGTTTAAACTTG Shal_3042 3712415 - 3710670 - | YidE/YbjL duplication TERM 4054 3711136 - 3711126 - G 76 -8.2 -4.06055 | overlap 3711127 AGTCCCTAAAGCAAA GGGG ATC CCCC CAAAAGTCACACTGA TERM 4055 3712811 - 3712792 - R 93 -10 -4.98522 | opp_overlap 3712805 AACTGGATAGAAAAA GGCCGTCT TTGC AGACGACC TCTCGACTAGTTAAC Shal_3043 3714216 - 3712822 - | glutamate decarboxylase TERM 4056 3713493 - 3713479 - G 72 -4.9 -4.58685 | overlap 3713481 AAATGGCGCTAAAAA GCCAC CGCTT GCGGC ATCAACATGCATTGG Shal_3044 3714715 - 3715041 + | antibiotic biosynthesis monooxygenase Shal_3045 3715383 - 3715177 - | hypothetical protein TERM 4057 3715563 - 3715590 + r 81 -11.4 -3.03903 | opp_overlap 3715568, overlap 3715568 ACTCAACTTCATACA AAAAAGGAGAGC ATTT GCTCTCCTTTTC TATTCAGCCAATTTT TERM 4058 3715568 - 3715585 + r 95 -11.3 -4.66537 | opp_overlap 3715568, overlap 3715563 ACTTCATACAAAAAA GGAGAGC ATTT GCTCTCC TTTTCTATTCAGCCA TERM 4059 3715585 - 3715568 - R 100 -11.3 -5.37043 | opp_overlap 3715563 3715568 ACTTCATACAAAAAA GGAGAGC ATTT GCTCTCC TTTTCTATTCAGCCA Shal_3046 3716120 - 3715665 - | hypothetical protein Shal_3047 3716286 - 3716963 + | hypothetical protein Shal_3048 3717090 - 3718439 + | Fmu (Sun) domain-containing protein TERM 4060 3718483 - 3718465 - T 100 -13.2 -5.71983 | opp_overlap 3718465 TTAATGATAAAAAAA CGCCATAC ATC GTATGGCG TTTTTTTTTGGCAAT TERM 4061 3718465 - 3718483 + T 100 -13.2 -6.07627 | opp_overlap 3718465 TTAATGATAAAAAAA CGCCATAC ATC GTATGGCG TTTTTTTTTGGCAAT Shal_3049 3719123 - 3718584 - | YfaZ family protein Shal_3050 3719542 - 3720621 + | putative lipoprotein TERM 4062 3720668 - 3720652 - f 100 -13.7 -4.4017 | opp_overlap 3720652 GCAATCGTTATAAAA GGGGCGA ATA TCGCCCC TTTCTTTTCAGCTTT TERM 4063 3720652 - 3720668 + F 100 -13.7 -4.69559 | opp_overlap 3720652 GCAATCGTTATAAAA GGGGCGA ATA TCGCCCC TTTCTTTTCAGCTTT TERM 4064 3720777 - 3720753 - f 70 -5.7 -4.43859 | overlap 3720756 CACAAGCCGATAAAA TCACGCTAGAG TAT CCCTAACGCAA CGAGGGGGAAATAAT Shal_3051 3720791 - 3721273 + | glutathione peroxidase TERM 4065 3721444 - 3721464 + F 100 -9.7 -5.76633 | opp_overlap 3721442 3721445, overlap 3721445 CAATGTAGATCAATC AGGCAATCC TTT GGATTGCCC TTTTTTTATCTATAC TERM 4066 3721463 - 3721445 - f 90 -13.2 -2.82291 | opp_overlap 3721444 3721445, overlap 3721442 AATGTAGATCAATCA GGCAATCC TTT GGATTGCC CTTTTTTTATCTATA TERM 4067 3721445 - 3721463 + F 100 -13.2 -4.04353 | opp_overlap 3721445 3721442, overlap 3721444 AATGTAGATCAATCA GGCAATCC TTT GGATTGCC CTTTTTTTATCTATA Shal_3052 3721710 - 3722642 + | aspartate carbamoyltransferase TERM 4068 3722663 - 3722651 - g 85 -6.3 -5.18357 | TAAGTGATGAAAAAA CAACT TAA AGTTG AAGCTATCGAGCACG Shal_3053 3722642 - 3723100 + | aspartate carbamoyltransferase regulatory subunit TERM 4069 3723193 - 3723170 - T 73 -9.7 -3.14931 | opp_overlap 3723170 TTCATTTCCTATTAA GGCCATTAT TTCAAT ATAATGGCC TTTTGTTTATTTAAC TERM 4070 3723170 - 3723193 + T 100 -9.7 -5.18866 | opp_overlap 3723170 TTCATTTCCTATTAA GGCCATTAT TTCAAT ATAATGGCC TTTTGTTTATTTAAC Shal_3054 3723557 - 3723417 - | putative transcriptional regulator TERM 4071 3723871 - 3723889 + r 100 -13.2 -6.06529 | opp_overlap 3723867 GAAATAGATTATTAC GGCAACCT ATT AGGTTGCC TTTTTTTTGTCTGTC TERM 4072 3724248 - 3724266 + r 100 -13.2 -6.06529 | opp_overlap 3724244 GAAATAGATTATTAC GGCAACCT ATT AGGTTGCC TTTTTTTTGTCTGTC TERM 4073 3724625 - 3724646 + r 100 -13.1 -5.75342 | AAACTGACACTTTTA TGGCAACCT GATT AGGTTGCCA TTTTTTTTACCCCAA Shal_3055 3726463 - 3724682 - | peptidase M1 membrane alanine aminopeptidase TERM 4074 3727033 - 3727013 - g 85 -5.4 -5.31275 | GCCTATGAGAAAAAA GGCCAAGT GTGGA ACCTAGCC CATGAGTACGTGCAT Shal_3056 3726575 - 3727471 + | collagenase TERM 4075 3727761 - 3727779 + T 100 -7.4 -6.25741 | CGAATTGGAACCTTA GCGACC TCATTTT GGTCGC TTTTTTTTATTCTTT TERM 4076 3727945 - 3727932 - T 100 -8.1 -5.83211 | opp_overlap 3727932 3727931 CACGAAAACAAAAAA GCCTC AATA GAGGC CTTTTCATTAATGTT Shal_3057 3728960 - 3727989 - | phosphate binding protein TERM 4077 3728044 - 3728030 - G 73 -10 -3.35798 | AGTCTTTAGCGATAA CACTGC GTG GCAGTG CAACATAACCGTCTT TERM 4078 3729105 - 3729092 - R 85 -5.9 -5.1861 | opp_overlap 3729092 TTTATTACTAAAAAA CAGGC CTAA GCCCG TTCTTCATGACAACC Shal_3058 3730462 - 3729152 - | PAS/PAC sensor signal transduction histidine kinase TERM 4079 3730193 - 3730182 - G 73 -2.2 -5.14563 | CGCCCGAGCAAAAAA GCCA GCTG TGAC ACCCGTTTACGATTT Shal_3059 3731226 - 3730537 - | two component transcriptional regulator TERM 4080 3731440 - 3731412 - R 100 -14.7 -3.78775 | opp_overlap 3731419 3731420 3731437, overlap 3731420 TGTTTTAGCATTAAA GTAAAAAAGGGCC CTA GGCCCCTTTTCAC AACTGTGGTTGATTT TERM 4081 3731419 - 3731433 + r 71 -7 -4.10657 | opp_overlap 3731412 3731420, overlap 3731420 GCATTAAAGTAAAAA AGGGCC CTA GGCCCC TTTTCACAACTGTGG TERM 4082 3731420 - 3731432 + r 75 -10.5 -3.06073 | opp_overlap 3731412 3731420, overlap 3731419 CATTAAAGTAAAAAA GGGCC CTA GGCCC CTTTTCACAACTGTG TERM 4083 3731432 - 3731420 - R 100 -10.5 -5.40004 | opp_overlap 3731420 3731419, overlap 3731412 CATTAAAGTAAAAAA GGGCC CTA GGCCC CTTTTCACAACTGTG Shal_3060 3732404 - 3731454 - | porin TERM 4084 3732603 - 3732579 - H 80 -8 -4.32607 | opp_overlap 3732599 CGAAAACGTAAGAAA TGTGACACTT TAATG AAATGTCACA TAGTGATGATTATCG Shal_3061 3732693 - 3733604 + | recombination associated protein TERM 4085 3733649 - 3733624 - T 82 -11.9 -2.94126 | opp_overlap 3733629, overlap 3733629 AATTAGATTGAGACA CAAAAGGCGCC ATTT GGCGCCTTTTT TATGACCACTATTTA TERM 4086 3733629 - 3733644 + T 100 -11.8 -5.24531 | opp_overlap 3733629 3733624 GATTGAGACACAAAA GGCGCC ATTT GGCGCC TTTTTTATGACCACT TERM 4087 3733644 - 3733629 - T 95 -11.8 -4.61868 | opp_overlap 3733629, overlap 3733624 GATTGAGACACAAAA GGCGCC ATTT GGCGCC TTTTTTATGACCACT Shal_3062 3735492 - 3733687 - | peptidase M61 domain-containing protein TERM 4088 3733745 - 3733758 + g 80 -6.7 -4.83169 | opp_overlap 3733744 TCCACACCTAACCAC GCCTT AAAG AAGGC TTTTTGTGAGCGACT TERM 4089 3734323 - 3734303 - G 72 -2.6 -5.04175 | overlap 3734305 TGAAGTAGAGAAAAA TCTAACGC TAGTG ACGTTAAA TAACCTTCGGAGTAG Shal_3063 3735621 - 3737798 + | tetratricopeptide domain-containing protein TERM 4090 3738332 - 3738314 - g 80 -6 -5.0538 | opp_overlap 3738318 TCTTACTTTAAAAAA GAACTGGT TAA ACCATTTC ATACCTATTGGGATT TERM 4091 3738518 - 3738502 - g 75 -10.9 -2.98789 | overlap 3738499 3738497 ATTTAGAAAAGATCA GCGAGAT CAA ATCTCGC AAATTAAGCGCTCAT Shal_3064 3737918 - 3739474 + | diguanylate cyclase Shal_3065 3739554 - 3740906 + | hypothetical protein TERM 4092 3740973 - 3740952 - g 83 -13.7 -2.56914 | overlap 3740948 GATGGCATGAACTTA GTGCGGCGC ATTC ACGCCGCAC AGCCAAATGAATCCG TERM 4093 3741280 - 3741304 + G 74 -5.7 -4.62471 | opp_overlap 3741272 3741283, overlap 3741272 GCATAAATGGCGAAG CCATTATCGTT TCA ACCGATAAAGG TTTTTGCCAGTTAAG Shal_3066 3740916 - 3741674 + | exonuclease IX Shal_3067 3741787 - 3742173 + | hypothetical protein TERM 4094 3742213 - 3742232 + T 100 -12.2 -4.87665 | opp_overlap 3742213 TTGCTAAAACAAAAA GCAGCGAT AATT ATCGCTGC TTTTTGTGAATAGAC TERM 4095 3742232 - 3742213 - T 100 -12.2 -5.45802 | opp_overlap 3742213 TTGCTAAAACAAAAA GCAGCGAT AATT ATCGCTGC TTTTTGTGAATAGAC TERM 4096 3742833 - 3742812 - T 91 -8 -5.23644 | opp_overlap 3742812 AAGCAAATATAAAAA TGCCGAAG TCATCG CCTCGGCA TTTAGCACTTTATCA Shal_3068 3745742 - 3742935 - | peptidase S9 prolyl oligopeptidase TERM 4097 3745234 - 3745250 + g 70 -2.2 -5.04265 | TCTTTGTTACCGTTT TCAGGC TTATC GGCTGA TTTTTCATCTTTTTT TERM 4098 3745853 - 3745838 - H 87 -3.2 -5.71712 | opp_overlap 3745839, overlap 3745839 CCCTACAGAAAAAAA CGTGAG ATTG CTCACT ATTTACTGTGAAAGT TERM 4099 3745852 - 3745839 - H 71 -6.7 -4.01943 | opp_overlap 3745839, overlap 3745838 CCTACAGAAAAAAAC GTGAG ATTG CTCAC TATTTACTGTGAAAG Shal_3069 3745984 - 3746994 + | isocitrate dehydrogenase TERM 4100 3747081 - 3747046 - T 93 -9.8 -4.9181 | opp_overlap 3747052, overlap 3747047 3747052 AGACAAGATTAAAAA CCAAAAGGCCCCATGT TTTC ACATGAGGCCTTTTTT ATGCTCTTGCGTTAA TERM 4101 3747080 - 3747047 - T 95 -13.3 -3.53459 | opp_overlap 3747052, overlap 3747046 3747052 GACAAGATTAAAAAC CAAAAGGCCCCATGT TTTC ACATGAGGCCTTTTT TATGCTCTTGCGTTA TERM 4102 3747075 - 3747052 - T 100 -13.2 -4.80167 | opp_overlap 3747052, overlap 3747047 3747046 GATTAAAAACCAAAA GGCCCCATGT TTTC ACATGAGGCC TTTTTTATGCTCTTG TERM 4103 3747052 - 3747075 + T 100 -11 -5.36965 | opp_overlap 3747052 3747047 3747046 GATTAAAAACCAAAA GGCCCCATGT TTTC ACATGAGGCC TTTTTTATGCTCTTG Shal_3070 3748239 - 3747157 - | putative RNA 2'-O-ribose methyltransferase TERM 4104 3748296 - 3748275 - R 86 -10.3 -4.01071 | overlap 3748294 ATAATATCAATCAAA GTGTCATTT TAAA AAATGACAC AAGGCTTCAAAAGCA TERM 4105 3748355 - 3748382 + r 82 -8.4 -4.1964 | opp_overlap 3748357, overlap 3748357 ATAATTGATACAAAA AAGCGGCCAACA AAGT TGTTGCCCGCTA TTTTACACTGTTCAA TERM 4106 3748380 - 3748357 - R 100 -11 -5.38951 | opp_overlap 3748355 3748357 AATTGATACAAAAAA GCGGCCAACA AAGT TGTTGCCCGC TATTTTACACTGTTC TERM 4107 3748357 - 3748380 + r 83 -11 -3.69449 | opp_overlap 3748357, overlap 3748355 AATTGATACAAAAAA GCGGCCAACA AAGT TGTTGCCCGC TATTTTACACTGTTC Shal_3071 3748888 - 3748502 - | hypothetical protein TERM 4108 3748578 - 3748568 - G 73 -4.6 -4.7373 | overlap 3748575 CCAGCCGAGTAAAAA GCAG ACA CCGC CCATTGGCGTAACCG Shal_3072 3749705 - 3748971 - | dienelactone hydrolase TERM 4109 3749363 - 3749337 - G 79 -10.3 -3.57144 | gap 1 TTTTTTAGGCTTAAA CTGCAGCTTTAG AATA CTAA-GCTGCAG CGCATAATCGGCGAT TERM 4110 3749466 - 3749452 - G 80 -7 -4.72729 | opp_overlap 3749453, overlap 3749453 3749456 TAAGGAAAATTAAAA CGCACG ACA CGAGCG CCACTCGCGGCGATG Shal_3073 3750597 - 3749686 - | DNA-binding transcriptional activator GcvA Shal_3074 3750778 - 3751011 + | hypothetical protein TERM 4111 3751054 - 3751040 - T 76 -7.1 -4.19238 | opp_overlap 3751040 GCTTCAACGTTAAAA CCACC TCTAC GGTGG TTTTTTTGTACCCAT TERM 4112 3751040 - 3751054 + T 100 -7.1 -5.61596 | opp_overlap 3751040 GCTTCAACGTTAAAA CCACC TCTAC GGTGG TTTTTTTGTACCCAT TERM 4113 3751104 - 3751124 + T 100 -14.1 -3.61178 | opp_overlap 3751104 ATTGAGCACAAAAAA GGCGACTTA TAT TAAGTCGCC TTTGCCATACCTACG TERM 4114 3751124 - 3751104 - T 100 -14.1 -5.31877 | opp_overlap 3751104 ATTGAGCACAAAAAA GGCGACTTA TAT TAAGTCGCC TTTGCCATACCTACG Shal_3075 3752617 - 3751163 - | thiamine biosynthesis protein ThiI TERM 4115 3752753 - 3752786 + r 100 -16.9 -3.39895 | opp_overlap 3752753 3752756, overlap 3752756 GGGCAGATAGAACAA TAACACGCAAGCGAG TCAC CTCGATTGCGTGTTA TTCATTACTAAGCAC TERM 4116 3752786 - 3752753 - R 100 -16.9 -3.92996 | opp_overlap 3752753 3752756, overlap 3752756 GGGCAGATAGAACAA TAACACGCAAGCGAG TCAC CTCGATTGCGTGTTA TTCATTACTAAGCAC TERM 4117 3752756 - 3752783 + r 100 -14.2 -3.83844 | opp_overlap 3752753 3752756, overlap 3752753 CAGATAGAACAATAA CACGCAAGCGAG TCAC CTCGATTGCGTG TTATTCATTACTAAG TERM 4118 3752783 - 3752756 - R 100 -14.2 -4.0847 | opp_overlap 3752756 3752753, overlap 3752753 CAGATAGAACAATAA CACGCAAGCGAG TCAC CTCGATTGCGTG TTATTCATTACTAAG Shal_3076 3753775 - 3752807 - | flagellar motor protein MotB Shal_3077 3754547 - 3753780 - | flagellar motor protein PomA TERM 4119 3754309 - 3754276 - G 81 -5.3 -5.09426 | gap 1 TCCAATGCTAAAAAA CCACCTTTACGCGCCG CAT CGGC-CATAGAGATAG ATTGTTCAATAAGAT Shal_3078 3754982 - 3755230 + | exodeoxyribonuclease VII, small subunit Shal_3079 3755231 - 3756112 + | polyprenyl synthetase Shal_3080 3756135 - 3758000 + | 1-deoxy-D-xylulose-5-phosphate synthase TERM 4120 3758063 - 3758034 - T 93 -12.3 -3.88464 | opp_overlap 3758040, overlap 3758040 TGAAAAATAGCGAAA TAAAAAGGACTGC CTAG GCAGTCCTTTTTT AGGCTTGTGCTAACC TERM 4121 3758057 - 3758040 - T 100 -11.3 -5.31519 | opp_overlap 3758040, overlap 3758034 ATAGCGAAATAAAAA GGACTGC CTAG GCAGTCC TTTTTTAGGCTTGTG TERM 4122 3758040 - 3758057 + T 95 -11.3 -5.11033 | opp_overlap 3758034 3758040 ATAGCGAAATAAAAA GGACTGC CTAG GCAGTCC TTTTTTAGGCTTGTG Shal_3081 3758721 - 3758119 - | GrpE protein TERM 4123 3758555 - 3758568 + g 70 -2.4 -4.91459 | TCAACTTTAGTTTCA GCTT CTTGCA AAGC TTTTTCTAACTCTTC Shal_3082 3758770 - 3759699 + | ATP-NAD/AcoX kinase TERM 4124 3759890 - 3759878 - f 75 -2.7 -5.28778 | ATTATTCATAAAAAA TCAAC TCG ATTGA AAACATTAACTTAGA TERM 4125 3761913 - 3761896 - g 70 -9.9 -3.05463 | opp_overlap 3761894 ATTTTGGCTATGCAA GGCATTG GTGC CAATGCC GGTAATATGATGTGT Shal_3083 3760423 - 3762066 + | L-lactate permease TERM 4126 3762117 - 3762133 + F 73 -7.9 -3.92522 | AATAATATCGTGAGA GCCGCTG TTA TGGCGGC TTTATCCACTTAAAC TERM 4127 3764829 - 3764816 - g 78 -6.7 -4.57073 | TACGCTGGTGAAAAA GGCTT ATAC AAGCC AGAGATCAACGCCAG Shal_3084 3762170 - 3764989 + | FAD linked oxidase domain-containing protein TERM 4128 3765024 - 3765045 + F 100 -14.5 -4.88646 | opp_overlap 3765015 3765024 TATAGACCTCCTAAA CTAGGGGCT ACCC AGCCCCTAG TTTCTTTTCGTTTTT TERM 4129 3765045 - 3765024 - f 100 -14.5 -3.57119 | opp_overlap 3765024, overlap 3765015 TATAGACCTCCTAAA CTAGGGGCT ACCC AGCCCCTAG TTTCTTTTCGTTTTT TERM 4130 3765284 - 3765302 + F 71 -5.2 -4.60889 | opp_overlap 3765284 TCCGCTTACTAAAAA GTCGGCTT TTT GAGCAGAC TTTTTGCGGCTACTT TERM 4131 3765302 - 3765284 - f 72 -4.5 -4.72272 | opp_overlap 3765284 TCCGCTTACTAAAAA GTCGGCT TTTTG AGCAGAC TTTTTGCGGCTACTT TERM 4132 3765466 - 3765454 - g 80 -5.5 -4.94902 | GAATTATTAGAAAAA CTCGG ACA CCAAG TCATACTGCCAAAGG TERM 4133 3766067 - 3766055 - g 70 -9.1 -3.31263 | opp_overlap 3766055 ATGGTATGGTCAGAA GGCAG AAA CTGCC TATTGAGACTCGCCA Shal_3085 3765370 - 3766113 + | hypothetical protein Shal_3086 3766122 - 3767495 + | hypothetical protein TERM 4134 3767540 - 3767525 - g 79 -10.4 -3.64866 | ACACGACATTCTAAA CGCGCT AAAG AGCGCG GCGATTGCACCTCAA Shal_3087 3767499 - 3768068 + | hypothetical protein TERM 4135 3768112 - 3768093 - T 93 -10.8 -4.73388 | opp_overlap 3768093 3768111 AACTGGTACGAAAAA GCCCTAAT TGCT ATTAGGGC TTTATTAAGCTATTT TERM 4136 3768093 - 3768112 + T 90 -10.8 -4.21351 | opp_overlap 3768093, overlap 3768111 AACTGGTACGAAAAA GCCCTAAT TGCT ATTAGGGC TTTATTAAGCTATTT Shal_3088 3769301 - 3768156 - | TonB family protein TERM 4137 3768977 - 3768987 + g 75 -3.2 -5.15969 | ACAGCTCGAACGCCT GCTG TTT TAGC TTTTTTGACTTGGCA Shal_3089 3770922 - 3769546 - | MATE efflux family protein TERM 4138 3770866 - 3770883 + g 74 -11.3 -2.79327 | opp_overlap 3770864, overlap 3770865 CTCGGTGATCATAGG CGAGTCG ACTG CGACTCG GTTTACGTCAGCTGG Shal_3090 3772146 - 3771037 - | cobalamin synthesis protein P47K Shal_3091 3772624 - 3772289 - | hypothetical protein Shal_3092 3772838 - 3772671 - | hypothetical protein TERM 4139 3772989 - 3772961 - R 95 -6.2 -5.66684 | gap 1, opp_overlap 3772961 TAACCCATAAAAAAA GTGAACACA-CTA GCAA TAGATATGTTCAC TTTCTTAGATGAGTA Shal_3093 3774445 - 3773021 - | DEAD/DEAH box helicase domain-containing protein Shal_3094 3777514 - 3774461 - | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) TERM 4140 3777395 - 3777373 - G 70 -9.1 -3.32343 | GGGAGATGGTGATAA CGGCAACGA AAAAA CCGCTGCCG ACACGCCATAAAATA TERM 4141 3777979 - 3777941 - R 76 -10.6 -2.60244 | opp_overlap 3777974, overlap 3777945 3777974 CGCTTAAGCAATCGA GCAATACTTCATCACA GGTGAGA TATGATGAAATATTGC AAATATTCACTATTA Shal_3095 3778432 - 3777992 - | OsmC family protein TERM 4142 3779325 - 3779337 + G 76 -4.8 -4.86001 | AGCTATTAATTGAAC GCCT GAGTG AGGC TTTTTCTGAAGTCGT Shal_3097 3778886 - 3779362 + | thioesterase superfamily protein TERM 4143 3779376 - 3779415 + T 86 -9.5 -3.97051 | opp_overlap 3779381, overlap 3779381 AAAATGTAATGAGTA TTAAAGGTAATAAGCTC TTGCTT GAGCTGCTTACCTTTAA TTGTTTACCCTGTTT Shal_3098 3780912 - 3779437 - | diguanylate cyclase/phosphodiesterase TERM 4144 3780075 - 3780052 - G 76 -7.4 -4.20918 | TGCAAGTGGAATAAA CTCGGCAGGA GATA TGCTGCCAAG TTGCGGGTGCTGCCA TERM 4145 3781000 - 3780961 - R 73 -7.9 -3.85698 | opp_overlap 3780961 3780956 3780955 3780964, overlap 3780964 TTCTTTTGTTATAAA CTATAGTGCCTGCTAGC CCCTAT GCCAGCACACACTATCG TTTAAGTTTTCATAG Shal_3099 3781880 - 3781038 - | putative signal transduction protein Shal_3100 3782169 - 3783536 + | peptidase U32 TERM 4146 3783589 - 3783618 + T 83 -12.3 -2.8585 | opp_overlap 3783595, overlap 3783595 GAACGCTAAAAATTT AAAAAAGGCCTCT ATTT AGAGGCCTTTTTA GTTTGGGTTGAATAA TERM 4147 3783595 - 3783612 + T 95 -11.3 -5.01042 | opp_overlap 3783595, overlap 3783589 TAAAAATTTAAAAAA GGCCTCT ATTT AGAGGCC TTTTTAGTTTGGGTT TERM 4148 3783612 - 3783595 - T 100 -11.3 -5.30575 | opp_overlap 3783595 3783589 TAAAAATTTAAAAAA GGCCTCT ATTT AGAGGCC TTTTTAGTTTGGGTT Shal_3101 3784916 - 3783660 - | carbohydrate-selective porin OprB Shal_3102 3785698 - 3784964 - | hypothetical protein TERM 4149 3785868 - 3785887 + r 86 -10 -4.05446 | opp_overlap 3785850 3785868 CCTATTGATAAAAAA GGCAAGCT AGAT GGCTTGCC TTTATCCTTAAGACG TERM 4150 3785887 - 3785868 - R 93 -9.3 -5.28176 | opp_overlap 3785868, overlap 3785850 CCTATTGATAAAAAA GGCAAGC TAGATG GCTTGCC TTTATCCTTAAGACG Shal_3103 3786732 - 3785914 - | hypothetical protein Shal_3104 3787292 - 3786729 - | amidohydrolase Shal_3105 3788542 - 3787532 - | AraC family transcriptional regulator TERM 4151 3787978 - 3787964 - G 78 -5 -5.03314 | overlap 3787965 CCTATTGGTAAAAAA CTGACT TCG AGTCAA TTGCGGTAAAGTAGA TERM 4152 3788100 - 3788086 - G 73 -4.3 -4.76311 | CACAAATAAAAATAA CAGAA AAAAG TTCTG CATGGGTAAACCATG TERM 4153 3788766 - 3788781 + H 70 -8.2 -3.70076 | ATCATTTTTAGACTG CTCCGC ATAG GCGGGG TTTAAGTAAATTTAA Shal_3106 3788813 - 3789070 + | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein TERM 4154 3789086 - 3789113 + F 93 -11.4 -4.46212 | opp_overlap 3789091, overlap 3789091 GCTTATCTTAGCGAT AAAAATGGAGCC AAAT GGCTCCATTTTG TTTTGTAGTAAAGCC TERM 4155 3789108 - 3789091 - f 95 -11.3 -4.87665 | opp_overlap 3789091 3789086 TCTTAGCGATAAAAA TGGAGCC AAAT GGCTCCA TTTTGTTTTGTAGTA TERM 4156 3789091 - 3789108 + F 100 -11.3 -5.20781 | opp_overlap 3789091, overlap 3789086 TCTTAGCGATAAAAA TGGAGCC AAAT GGCTCCA TTTTGTTTTGTAGTA TERM 4157 3790795 - 3790783 - g 73 -7.7 -4.18018 | CTGTGGCAGGTAAAA TCTCG CAG CGAGA AACACACCATGCTAT Shal_3107 3789301 - 3791019 + | pseudouridine synthase Shal_3108 3791697 - 3791185 - | sterol-binding domain-containing protein Shal_3109 3791830 - 3792831 + | peptidase U32 TERM 4158 3793232 - 3793219 - g 70 -2.3 -5.03314 | GCCACTCTTAAAAAA CTCCA CCAG TGGGG TATGCAGCGCTTCGT Shal_3110 3792841 - 3793698 + | peptidase U32 TERM 4159 3793794 - 3793769 - f 86 -7.5 -5.15634 | opp_overlap 3793769 CATTCTATGAAAAAA GCCCGTTTATC GAAA GGTAAGCGGGC TTTTTGTTATGTTTA TERM 4160 3793769 - 3793794 + F 100 -11.9 -5.33331 | opp_overlap 3793769 CATTCTATGAAAAAA GCCCGTTTATC GAAA GGTAAGCGGGC TTTTTGTTATGTTTA Shal_3111 3794213 - 3795346 + | S-(hydroxymethyl)glutathione dehydrogenase TERM 4161 3795359 - 3795388 + T 79 -10.1 -3.53091 | opp_overlap 3795361 3795364 3795367, overlap 3795361 3795364 3795367 TAGATAATCGCTTAA AACAATAAGCGCT CACG GGCGCTTATTGTG TTTAAGGCAACCGGT TERM 4162 3795361 - 3795386 + T 87 -12.7 -3.34398 | opp_overlap 3795361 3795364 3795367, overlap 3795359 3795364 3795367 GATAATCGCTTAAAA CAATAAGCGCT CACG GGCGCTTATTG TGTTTAAGGCAACCG TERM 4163 3795386 - 3795361 - T 91 -12 -4.12198 | opp_overlap 3795361 3795359 3795364 3795367, overlap 3795364 3795367 GATAATCGCTTAAAA CAATAAGCGC TCACGG GCGCTTATTG TGTTTAAGGCAACCG TERM 4164 3795364 - 3795383 + T 77 -8.6 -3.81488 | opp_overlap 3795361 3795364 3795367, overlap 3795361 3795359 3795367 AATCGCTTAAAACAA TAAGCGCT CACG GGCGCTTA TTGTGTTTAAGGCAA TERM 4165 3795383 - 3795364 - T 77 -7.9 -4.18164 | opp_overlap 3795364 3795361 3795359 3795367, overlap 3795361 3795367 AATCGCTTAAAACAA TAAGCGC TCACGG GCGCTTA TTGTGTTTAAGGCAA TERM 4166 3795550 - 3795561 + T 70 -3 -5.14965 | AAATGAGTGGCGCAC CTAA CTAA TTAG TTTTTTCGTCAGAGT Shal_3112 3796258 - 3795554 - | hypothetical protein TERM 4167 3796577 - 3796594 + H 85 -9.1 -4.25283 | overlap 3796572 TTGTGTTAATGCATT GCAGTGC TGTT GCGCTGC TTTTACTGCCACACT TERM 4168 3796874 - 3796836 - g 74 -3.3 -5.04987 | gap 1, overlap 3796837 AATACCCGCAAAAAA GGTTG-ATACCATCTATC AATC GATAAAAGGTATTCAACA ATTAGCACTACAAAA Shal_3113 3796741 - 3797064 + | methyl-accepting chemotaxis sensory transducer TERM 4169 3797828 - 3797841 + G 84 -5.3 -5.27938 | overlap 3797819 ACGACCTACTACCAG TACTG TTCT CAGTA TTTTTATTTGCAGGT Shal_3114 3797422 - 3798777 + | nucleoside recognition domain-containing protein TERM 4170 3798836 - 3798814 - T 72 -9.2 -3.34013 | opp_overlap 3798814 CACGGTTTTAACTAA GCCAGTTG CTATTGC CAACTGGC TTTTTTTATCTCGTT TERM 4171 3798814 - 3798836 + T 100 -9.2 -5.75478 | opp_overlap 3798814 CACGGTTTTAACTAA GCCAGTTG CTATTGC CAACTGGC TTTTTTTATCTCGTT TERM 4172 3799170 - 3799189 + T 100 -12.2 -4.91109 | opp_overlap 3799170 AACGCAGACAAAAAA GCCAGTCA TCAA TGACTGGC TTTTTATGGTAAGGC TERM 4173 3799189 - 3799170 - T 100 -12.2 -5.38951 | opp_overlap 3799170 AACGCAGACAAAAAA GCCAGTCA TCAA TGACTGGC TTTTTATGGTAAGGC Shal_3115 3800578 - 3799220 - | xanthine/uracil/vitamin C permease TERM 4174 3799634 - 3799615 - G 79 -9.2 -4.05747 | CAGACTCGATATAAA CAGCGGCA GGAG CGCCGCCG ACTGCGCCAGCAAAG TERM 4175 3801011 - 3800970 - R 72 -9.1 -3.35639 | gap 1, opp_overlap 3800975, overlap 3800973 AACATGGCTAATTAA TACCAGTCAGTATAATAAAT CAC ATCT-TTATACTGACTGCTA TAACAGCCAGCACAC TERM 4176 3801008 - 3800973 - R 76 -10.8 -2.54276 | gap 1, opp_overlap 3800975, overlap 3800970 ATGGCTAATTAATAC CAGTCAGTATAATAAAT CAC ATCT-TTATACTGACTG CTATAACAGCCAGCA Shal_3116 3802341 - 3801028 - | DEAD/DEAH box helicase domain-containing protein Shal_3117 3802509 - 3803696 + | glyceraldehyde 3-phosphate dehydrogenase Shal_3118 3803894 - 3804439 + | hypothetical protein Shal_3119 3804599 - 3804973 + | type IV pilus assembly PilZ TERM 4177 3805034 - 3805004 - T 93 -12.7 -3.92746 | opp_overlap 3805010, overlap 3805010 GCTATGGTAAAAATA TAAAAACGCCGCA GATTT TGCGGCGTTTTTG CTTTCATACTCAGTG TERM 4178 3805028 - 3805010 - T 100 -11.7 -5.36364 | opp_overlap 3805010, overlap 3805004 GTAAAAATATAAAAA CGCCGCA GATTT TGCGGCG TTTTTGCTTTCATAC TERM 4179 3805010 - 3805028 + T 100 -12.4 -5.01811 | opp_overlap 3805010 3805004 GTAAAAATATAAAAA CGCCGCAG ATT TTGCGGCG TTTTTGCTTTCATAC Shal_3120 3806439 - 3805066 - | DNA repair protein RadA TERM 4180 3805654 - 3805644 - G 74 -5.4 -4.62069 | CGGTCATCTTAAAAA TACC CAC GGTA TCCACATCACCAAAA TERM 4181 3807608 - 3807638 + G 77 -3.3 -5.19879 | gap 1, opp_overlap 3807608 3807607, overlap 3807609 AGTGAAACAAATTAT C-GACTGTGCTGAT GATA ACCAACACAGTCTG TTTTTCTGTTTCACC TERM 4182 3807609 - 3807636 + G 74 -7 -4.22132 | opp_overlap 3807608 3807607, overlap 3807608 GTGAAACAAATTATC GACTGTGCTGAT GATA ACCAACACAGTC TGTTTTTCTGTTTCA TERM 4183 3808408 - 3808396 - g 78 -4.9 -5.06103 | overlap 3808405 ACAAGCTTCAAAAAA TTACT GAA AGTAA CCATTACGGTAAAGA TERM 4184 3808643 - 3808613 - g 76 -12 -2.71011 | opp_overlap 3808621 ACCGCTGCTTAATGA CGGTAAGCTAAAGC GCG ACTTTATCTTACCG ATCCGGACAATGAAG Shal_3121 3806592 - 3809033 + | type IV pilus assembly PilZ TERM 4185 3809091 - 3809057 - T 75 -10.1 -2.98493 | gap 1, opp_overlap 3809058 3809059, overlap 3809041 3809054 CTCATTACTAAATTA GCCCTAATGCACGTTG ATAA CAACGAGCATCAGG-C TTTAAGTACGATGAA TERM 4186 3809058 - 3809091 + T 70 -8.1 -3.65902 | opp_overlap 3809057 3809054, overlap 3809059 TCATTACTAAATTAG CCCTAATGCACGTTG ATAA CAACGAGCATCAGGC TTTAAGTACGATGAA TERM 4187 3809059 - 3809090 + T 80 -11.6 -2.79327 | opp_overlap 3809057 3809054, overlap 3809058 CATTACTAAATTAGC CCTAATGCACGTTG ATAA CAACGAGCATCAGG CTTTAAGTACGATGA Shal_3122 3809579 - 3809127 - | hypothetical protein Shal_3123 3809998 - 3810729 + | SNARE associated Golgi protein TERM 4188 3810740 - 3810760 + T 83 -12.6 -2.84098 | overlap 3810737 AGTAATTCACTCTAA GGCCCTGT ATTTG ACAGGGCC TGCTTGATTGGAAGC Shal_3124 3812696 - 3810870 - | sulfatase TERM 4189 3812934 - 3812907 - R 100 -18.6 -4.58283 | opp_overlap 3812910 GAATTCCTCTAAAAA TAATAGCGGCCC AAAA GGGCCGCTATTA ATGATTAACACTTAG TERM 4190 3812910 - 3812931 + r 100 -15.9 -3.27476 | opp_overlap 3812907 TTCCTCTAAAAATAA TAGCGGCCC AAAA GGGCCGCTA TTAATGATTAACACT Shal_3125 3813915 - 3812968 - | polysulphide reductase NrfD TERM 4191 3813487 - 3813471 - G 71 -3.7 -4.81551 | opp_overlap 3813471 3813474, overlap 3813474 GACCCAGAGCAAAAA TAAGCTT ATT AAGCGTA TTTTCTACCTGACGG TERM 4192 3813484 - 3813474 - G 72 -5.4 -4.50988 | opp_overlap 3813474 3813471, overlap 3813471 CCAGAGCAAAAATAA GCTT ATT AAGC GTATTTTCTACCTGA Shal_3126 3814484 - 3813912 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shal_3127 3816773 - 3814497 - | molybdopterin oxidoreductase TERM 4193 3816536 - 3816500 - G 84 -10.8 -3.96148 | gap 1, overlap 3816533 GCTGTTTATCATAAA GCTGGCTGTGACCCGCA CCAC CGCGGG-CACAGACGGC GCCGCCAAAATCCTC TERM 4194 3816807 - 3816780 - R 74 -9.2 -3.60296 | TAGTTTCATGTTAAA TCTCCCAATGAC AGTT GTCCTTAGGAGA GCGTTAGATAAAGCC TERM 4195 3817082 - 3817061 - R 93 -11.6 -4.2349 | opp_overlap 3817061 GTTTTAGATGCAAAA TGTGCGGC TAGATG GCCGCACA TTCACTTCAAAAAAC TERM 4196 3817061 - 3817082 + r 85 -12.3 -3.17075 | opp_overlap 3817061 GTTTTAGATGCAAAA TGTGCGGCT AGAT GGCCGCACA TTCACTTCAAAAAAC Shal_3128 3818900 - 3817116 - | histidine kinase TERM 4197 3818398 - 3818386 - G 73 -7.7 -4.13767 | overlap 3818390 3818394 3818395 GGGTCGAGCGGAAAA CCAAG AAA CTTGG TCTCGCCAAAGAAGG Shal_3129 3819129 - 3819740 + | two component LuxR family transcriptional regulator Shal_3130 3820752 - 3819844 - | alpha/beta hydrolase fold TERM 4198 3819968 - 3819947 - G 83 -9.5 -4.11692 | gap 1, opp_overlap 3819947 3819963, overlap 3819966 TAGTCATGCTTAAAA CCCTGCT-TC TTT GATAGCAGGG TGTAATCTACCCGCT TERM 4199 3820853 - 3820838 - R 91 -6.2 -5.41359 | opp_overlap 3820837 3820838 3820840 AACCAAAGTAAAAAA CAGATT GATA AATCTG ATTTTAAACAGAGCT TERM 4200 3820947 - 3820926 - R 79 -5.9 -4.93696 | opp_overlap 3820926, overlap 3820920 TTCAAACATGAAAAA CTCACAACA AAAT CGTTATGAG TCTTCCTAGCAAAGC Shal_3131 3821998 - 3820991 - | phosphoserine phosphatase SerB TERM 4201 3822726 - 3822710 - g 95 -2.9 -5.84011 | overlap 3822711 3822712 AAGAAAAAAGAAAAA GCCGC GGCTAAG GCAGC GAAAAAACAAGCTAA TERM 4202 3823136 - 3823118 - g 70 -5.2 -4.54727 | GCTGTCAAACCAAAA GCTAAGAC GAA GCCTAAGC CTAAAACAACAGCTC Shal_3132 3822077 - 3823558 + | membrane protein TERM 4203 3823599 - 3823626 + T 87 -12.8 -3.36749 | opp_overlap 3823604, overlap 3823604 TTTGAGGCTAAAAAC AAAAACGGACGC ATAA GCGTCCGTTTTA TTACTCTTCAACCTC TERM 4204 3823621 - 3823604 - T 100 -12.7 -5.61881 | opp_overlap 3823599 3823604 GGCTAAAAACAAAAA CGGACGC ATAA GCGTCCG TTTTATTACTCTTCA TERM 4205 3823604 - 3823621 + T 100 -12.7 -4.78753 | opp_overlap 3823604, overlap 3823599 GGCTAAAAACAAAAA CGGACGC ATAA GCGTCCG TTTTATTACTCTTCA Shal_3133 3824380 - 3823670 - | purine nucleoside phosphorylase TERM 4206 3823931 - 3823921 - G 72 -5.4 -4.52589 | opp_overlap 3823924 GGTCTGCAGAGAAAA CGTT ACC AACG CGGTACTTAGTACCC Shal_3134 3825701 - 3824481 - | phosphopentomutase Shal_3135 3827046 - 3825715 - | thymidine phosphorylase TERM 4207 3826573 - 3826602 + g 72 -6.3 -4.2018 | opp_overlap 3826572 3826569 GGCAGGAACAAGATC GCCCGTTTGACCA ATAA TGGCCACACCGGC TTCTTTTACAACTTT Shal_3136 3827982 - 3827209 - | deoxyribose-phosphate aldolase TERM 4208 3827368 - 3827350 - G 80 -6.6 -4.74706 | opp_overlap 3827350 3827357 3827360, overlap 3827352 CGCAACACCTAAAAA CTCTGCAG CTG CCGCAGCG TCTTTTACGCCGCCA TERM 4209 3828536 - 3828501 - R 80 -10.6 -3.30124 | gap 1, opp_overlap 3828495 3828502, overlap 3828506 TTGCAGTTTGTAGAA TTTAATTAGAGCCGCGA AAT TCGCGGCTCTAAC-AGA TACTTAACGTGTTTT TERM 4210 3828502 - 3828536 + r 81 -12.2 -2.76651 | opp_overlap 3828501 3828506, overlap 3828495 TGCAGTTTGTAGAAT TTAATTAGAGCCGCGA AAT TCGCGGCTCTAACAGA TACTTAACGTGTTTT TERM 4211 3828532 - 3828506 - R 100 -19.6 -3.23274 | opp_overlap 3828502 3828495, overlap 3828501 GTTTGTAGAATTTAA TTAGAGCCGCGA AAT TCGCGGCTCTAA CAGATACTTAACGTG TERM 4212 3828547 - 3828567 + r 72 -9.1 -3.35996 | opp_overlap 3828544 3828537 ACAGATACTTAACGT GTTTTAAGC GAT GCTTAGAAC TTGTAAGTAGCAGTG Shal_3137 3829421 - 3828561 - | nucleoside-specific channel-forming protein Tsx TERM 4213 3829726 - 3829702 - R 100 -15.8 -3.1082 | GATTGATTTAATATA GCGCTACCCA AAAGG TGGGTAGCGC TTAGGCCGAGCAGTG Shal_3138 3831017 - 3829758 - | nucleoside transporter TERM 4214 3830774 - 3830757 - G 80 -6.3 -4.88293 | AATGGCAAAAATAAA GCCAACT TTGA AGTTAGC TAAATCACCAAATAA TERM 4215 3830899 - 3830887 - G 71 -3.3 -4.88495 | ACATATAGAACAAAA CCACC AAA AGCGG CTTGAATTGCCAATG Shal_3139 3831970 - 3831197 - | TatD-related deoxyribonuclease TERM 4216 3831229 - 3831256 + g 100 -4.9 -5.96219 | opp_overlap 3831230, overlap 3831230 GCGTGACATTAGAAA ACATCTGTTCT GAAATA AGAACGGATGA TTTTTTTTGTAAATG TERM 4217 3831230 - 3831255 + g 76 -8.4 -4.16105 | opp_overlap 3831230, overlap 3831229 CGTGACATTAGAAAA CATCTGTTCT GAAATA AGAACGGATG ATTTTTTTTGTAAAT TERM 4218 3831255 - 3831230 - G 75 -6.2 -4.50976 | opp_overlap 3831230 3831229 CGTGACATTAGAAAA CATCTGTTCT GAAATA AGAACGGATG ATTTTTTTTGTAAAT TERM 4219 3831813 - 3831799 - G 83 -10 -4.13654 | TCCCCAAACTATAAA GGCAGT TAT ACTGCC GAGCCACAGCGATTT TERM 4220 3832300 - 3832270 - R 90 -9 -4.99035 | opp_overlap 3832276, overlap 3832271 3832276 TCAGCGATATAAAAA GCAAAACCCCAAGC AGA GCCTGGGGTTTTTA GTATTGAATAGTTAA TERM 4221 3832299 - 3832271 - R 90 -12.5 -3.58698 | opp_overlap 3832276, overlap 3832270 3832276 CAGCGATATAAAAAG CAAAACCCCAAGC AGA GCCTGGGGTTTTT AGTATTGAATAGTTA TERM 4222 3832294 - 3832276 - R 100 -12.4 -4.84033 | opp_overlap 3832276, overlap 3832271 3832270 ATATAAAAAGCAAAA CCCCAAGC AGA GCCTGGGG TTTTTAGTATTGAAT TERM 4223 3832276 - 3832294 + r 93 -10.2 -4.88228 | opp_overlap 3832276 3832271 3832270 ATATAAAAAGCAAAA CCCCAAGC AGA GCCTGGGG TTTTTAGTATTGAAT Shal_3140 3833903 - 3832323 - | peptide chain release factor 3 TERM 4224 3834041 - 3834027 - R 100 -11.4 -5.45652 | opp_overlap 3834027 AGTCGCAATAAAAAA GCCTCC AAA GGAGGC TTTTTTAAACTGATA TERM 4225 3834027 - 3834041 + r 95 -11.4 -5.06451 | opp_overlap 3834027 AGTCGCAATAAAAAA GCCTCC AAA GGAGGC TTTTTTAAACTGATA Shal_3141 3834959 - 3834066 - | lipoprotein NlpI TERM 4226 3835106 - 3835090 - R 100 -9.4 -5.60993 | opp_overlap 3835088 3835084 3835090 TTTCGCATAAAAAAA GGAGGC TCAAG GCCTCC TATTCATTTAAAGTG TERM 4227 3835090 - 3835106 + r 77 -10.1 -3.33865 | opp_overlap 3835090, overlap 3835088 3835084 TTTCGCATAAAAAAA GGAGGCT CAA GGCCTCC TATTCATTTAAAGTG Shal_3142 3837243 - 3835129 - | polynucleotide phosphorylase/polyadenylase TERM 4228 3837520 - 3837530 + G 72 -3.2 -4.93296 | TGCCGTTGCAATCTT TCTC ATT GAGG TTTTTCTGCTCCTCA TERM 4229 3838688 - 3838673 - g 72 -9 -3.53012 | overlap 3838658 TGGGCCTTCTTTAAA GCTCAG ATGA CTGAGC GAGCTGCAGTACGCT Shal_3143 3837437 - 3839482 + | diguanylate cyclase/phosphodiesterase TERM 4230 3839522 - 3839508 - T 100 -11.4 -5.64274 | opp_overlap 3839508 TTAGGTACAAAAAAA GGAGGC TTA GCCTCC TTTTAATAGATCAGA TERM 4231 3839508 - 3839522 + T 93 -11.4 -4.2828 | opp_overlap 3839508 TTAGGTACAAAAAAA GGAGGC TTA GCCTCC TTTTAATAGATCAGA Shal_3144 3839815 - 3839546 - | 30S ribosomal protein S15 Shal_3145 3840883 - 3839936 - | tRNA pseudouridine synthase B TERM 4232 3840752 - 3840766 + g 72 -5.6 -4.50159 | overlap 3840764 TAGCGGATCCAGAGC GCCGGT ATG ACCCGC TTTATTTGCATTAAA Shal_3146 3841311 - 3840883 - | ribosome-binding factor A TERM 4233 3841225 - 3841213 - G 71 -7.7 -3.89881 | opp_overlap 3841211 3841213 ATTAACCGTTACAAA CCCAA TTC TTGGG TCTTTCATATCACGC TERM 4234 3841357 - 3841329 - R 93 -12.6 -3.87373 | gap 1, opp_overlap 3841335, overlap 3841331 3841332 3841335 TATATTTGCCATAAA TATTAAGGGCGGC TAAC GCCGCCCTTA-TA AAATAATAAGATAGA TERM 4235 3841356 - 3841331 - R 95 -13.3 -3.5241 | opp_overlap 3841335, overlap 3841329 3841332 3841335 TATTTGCCATAAATA TTAAGGGCGGC TAAC GCCGCCCTTAT AAAATAATAAGATAG TERM 4236 3841355 - 3841332 - R 100 -16.8 -2.71125 | opp_overlap 3841335, overlap 3841331 3841329 3841335 ATTTGCCATAAATAT TAAGGGCGGC TAAC GCCGCCCTTA TAAAATAATAAGATA TERM 4237 3841352 - 3841335 - R 100 -14.1 -3.50335 | opp_overlap 3841335, overlap 3841332 3841331 3841329 TGCCATAAATATTAA GGGCGGC TAAC GCCGCCC TTATAAAATAATAAG TERM 4238 3841335 - 3841352 + r 100 -14.1 -3.34043 | opp_overlap 3841335 3841332 3841331 3841329 TGCCATAAATATTAA GGGCGGC TAAC GCCGCCC TTATAAAATAATAAG Shal_3147 3844054 - 3841373 - | translation initiation factor IF-2 TERM 4239 3843308 - 3843326 + g 87 -10.2 -4.14392 | ATTAGCAGAAGGCTT GCGTGGAC GAC GACCACGC TTTTCAGCATTAGCG TERM 4240 3844005 - 3843986 - G 75 -6.4 -4.3898 | opp_overlap 3843986 ACCAGCCTGAGAAAA CTGTTCGA CTAG TCGATCAG TGCTTTTCCCAACTT Shal_3148 3845582 - 3844083 - | transcription elongation factor NusA Shal_3149 3846065 - 3845610 - | hypothetical protein TERM 4241 3846103 - 3846090 - R 100 -5.9 -5.98675 | CAGAAAAACAAAAAA GGGCC TAAT AGCCC CAGTACACGTCACCT TERM 4242 3846170 - 3846155 - R 100 -6.8 -5.60689 | opp_overlap 3846155 GCAGATAACAAAAAA CCCCGT AATG ACGAGG TTGATATATCCAGAA Shal_3150 3846942 - 3846607 - | preprotein translocase subunit SecG Shal_3151 3847726 - 3846944 - | Triose-phosphate isomerase TERM 4243 3847488 - 3847508 + g 76 -8.3 -4.08064 | opp_overlap 3847488 3847493 TCACCAGTATAAGCA CCAAAGTCA TGT TGACTTAGG TTTTGCGCGCCCATT Shal_3152 3849273 - 3847936 - | phosphoglucosamine mutase TERM 4244 3848615 - 3848625 + g 71 -6.8 -4.09818 | overlap 3848610 ATCTGCCCCATCGAT GTCG CAC CGAC TTTATCGTTAATATT Shal_3153 3850143 - 3849355 - | dihydropteroate synthase TERM 4245 3850239 - 3850217 - R 91 -12.1 -3.91488 | opp_overlap 3850217 3850222 3850238, overlap 3850222 AAGTTCCGTAAACAA GAAAACCCC TAGAC GGGGTTTTC TTTATTAAACTAAAG TERM 4246 3850217 - 3850239 + r 95 -12.1 -4.1822 | opp_overlap 3850217 3850222, overlap 3850222 3850238 AAGTTCCGTAAACAA GAAAACCCC TAGAC GGGGTTTTC TTTATTAAACTAAAG TERM 4247 3850234 - 3850222 - R 82 -6.2 -5.00196 | opp_overlap 3850222 3850217, overlap 3850217 CCGTAAACAAGAAAA CCCC TAGAC GGGG TTTTCTTTATTAAAC TERM 4248 3850222 - 3850234 + r 83 -6.2 -5.09762 | opp_overlap 3850217 3850222, overlap 3850217 CCGTAAACAAGAAAA CCCC TAGAC GGGG TTTTCTTTATTAAAC Shal_3154 3852208 - 3850256 - | ATP-dependent metalloprotease FtsH Shal_3155 3852898 - 3852269 - | 23S rRNA methyltransferase J Shal_3156 3852992 - 3853291 + | hypothetical protein TERM 4249 3853291 - 3853269 - T 74 -4.8 -4.67942 | opp_overlap 3853272 CTGAAGAAATGAAAA TTGCTGTGCC TAA GGCAAAGTAA TTAACAAAAGCTTTT TERM 4250 3853329 - 3853296 - T 72 -8.4 -3.50532 | opp_overlap 3853301, overlap 3853292 3853301 AGGCAAAGTAATTAA CAAAAGCTTTTTCA TTAATT TAAAAAAGCCTTTG TAAGATAAATAAAAG TERM 4251 3853324 - 3853301 - T 72 -4.7 -4.81082 | opp_overlap 3853301, overlap 3853296 3853292 AAGTAATTAACAAAA GCTTTTTCA TTAATT TAAAAAAGC CTTTGTAAGATAAAT TERM 4252 3853375 - 3853339 - T 100 -12.4 -4.1891 | opp_overlap 3853345, overlap 3853344 3853345 CCTTTGTAAGATAAA TAAAAGGAGCCGCTGA TTTAT TCAGCGGCTCTTTTTT TATCCAACTTTTGTC TERM 4253 3853370 - 3853344 - T 100 -12.3 -5.10033 | opp_overlap 3853345, overlap 3853339 3853345 GTAAGATAAATAAAA GGAGCCGCTGA TTTAT TCAGCGGCTCT TTTTTTATCCAACTT TERM 4254 3853345 - 3853369 + T 100 -15.8 -5.61596 | opp_overlap 3853344 3853339 3853345 TAAGATAAATAAAAG GAGCCGCTGA TTTAT TCAGCGGCTC TTTTTTTATCCAACT TERM 4255 3853369 - 3853345 - T 100 -15.8 -3.64393 | opp_overlap 3853345, overlap 3853344 3853339 TAAGATAAATAAAAG GAGCCGCTGA TTTAT TCAGCGGCTC TTTTTTTATCCAACT Shal_3157 3854581 - 3853673 - | protein-export membrane protein SecF Shal_3158 3856397 - 3854583 - | preprotein translocase subunit SecD TERM 4256 3855188 - 3855169 - G 79 -8.6 -4.3255 | gap 1, overlap 3855173 GCTCGAAGCAATAAA GCCAGCTGC TGT GCA-CTGGC ATAGTCAGCGGAGCC Shal_3159 3857304 - 3856813 - | hypothetical protein TERM 4257 3857468 - 3857445 - R 93 -12.6 -4.07877 | opp_overlap 3857450, overlap 3857450 GCATGTTACAAATAA TAAAACCGCT AAAA AGCGGTTTTA TTCAGCTATCTCCCC TERM 4258 3857450 - 3857463 + r 84 -8.1 -4.66987 | opp_overlap 3857445 3857450 TTACAAATAATAAAA CCGCT AAAA AGCGG TTTTATTCAGCTATC TERM 4259 3857463 - 3857450 - R 88 -8.1 -5.05116 | opp_overlap 3857450, overlap 3857445 TTACAAATAATAAAA CCGCT AAAA AGCGG TTTTATTCAGCTATC Shal_3160 3857958 - 3857497 - | transcription elongation factor GreA TERM 4260 3857728 - 3857715 - G 78 -5.3 -4.93365 | opp_overlap 3857715 CTGTAGAACCAAAAA TAACG CGGC CGTTA TTATCCATCGTAGTC TERM 4261 3858256 - 3858282 + r 78 -10.9 -3.0879 | opp_overlap 3858261, overlap 3858261 AAAATTAAGCCAATA AAAAAGGCCGC TAGTT GCGGCCTTTTC ATTTTAGCGTCGCTT TERM 4262 3858277 - 3858261 - R 100 -10.8 -5.5074 | opp_overlap 3858256 3858261 TAAGCCAATAAAAAA GGCCGC TAGTT GCGGCC TTTTCATTTTAGCGT TERM 4263 3858261 - 3858277 + r 93 -10.8 -4.67641 | opp_overlap 3858261, overlap 3858256 TAAGCCAATAAAAAA GGCCGC TAGTT GCGGCC TTTTCATTTTAGCGT Shal_3161 3861518 - 3858297 - | carbamoyl phosphate synthase large subunit TERM 4264 3860567 - 3860533 - G 72 -8.7 -3.77831 | gap 1, opp_overlap 3860560, overlap 3860525 TCATCAAGAGTGAAA CCAACCGCT-AGCTTG GCTG CAATCTTAGCGATTGG GAAACCTGTCGCTTT Shal_3162 3862692 - 3861547 - | carbamoyl phosphate synthase small subunit TERM 4265 3861702 - 3861717 + g 71 -7.6 -3.93782 | opp_overlap 3861700 3861702 ATGAGCCATCAAATA GTGACT TGTG AGTCAC TTTAATATTGGCTGG TERM 4266 3862868 - 3862853 - R 79 -3.4 -5.40474 | ATTTTGTCAAAAAAA TTTTTT ATGC AAAAAA AAACCGCTAATAGCG TERM 4267 3862872 - 3862884 + r 86 -9.1 -4.33907 | opp_overlap 3862872 TTATGCAAAAAAAAA CCGCT AAT AGCGG TTTTAAATATTTATG TERM 4268 3862884 - 3862872 - R 100 -9.1 -6.11644 | opp_overlap 3862872 TTATGCAAAAAAAAA CCGCT AAT AGCGG TTTTAAATATTTATG Shal_3163 3863710 - 3862895 - | dihydrodipicolinate reductase TERM 4269 3863618 - 3863635 + g 71 -7.1 -4.1466 | AATCGCCGCGCCCAA CAAAATG ATGC CATTTTG TTTTGCCGCTTCAAT TERM 4270 3863742 - 3863761 + r 86 -10.8 -3.90761 | opp_overlap 3863742 AAATGTCAAAAAAAA GCCTAAGT ATTA ACTTAGGC TTATTGTCTAACTTA TERM 4271 3863761 - 3863742 - R 100 -10.8 -5.82388 | opp_overlap 3863742 AAATGTCAAAAAAAA GCCTAAGT ATTA ACTTAGGC TTATTGTCTAACTTA TERM 4272 3863816 - 3863792 - R 73 -8.7 -3.66028 | opp_overlap 3863792 GATAATGTCTAACAA TTCAACTTCGA ATA CCAAAGTTGAA TATGGTGGGATTGCA Shal_3164 3864391 - 3863774 - | peptidylprolyl isomerase FKBP-type Shal_3165 3865275 - 3864475 - | peptidase M48 Ste24p TERM 4273 3865354 - 3865337 - R 100 -10.5 -5.24796 | opp_overlap 3865337 GTCAGACAATAAAAA GCCCCGC AGTC GCGAGGC TTAAATTATATACAG Shal_3166 3866513 - 3865383 - | chaperone protein DnaJ TERM 4274 3866266 - 3866251 - G 90 -10.4 -4.34947 | overlap 3866243 AACACATCACCAAAA TCGGCG CCGC CGCCGA AACCACCACCGCCAC TERM 4275 3866581 - 3866553 - R 100 -14 -3.87815 | gap 1 TTGCAGTTGCACAAA CGGGCGTTA-GAG TTTC CTCATAACGCCCG CTACAATAATTTAGG Shal_3167 3868525 - 3866609 - | chaperone protein DnaK TERM 4276 3868049 - 3868063 + g 79 -10 -3.794 | AACTTCAAGACCTGC GATGCG ACC CGCATC TTTAGTAGCTTGACG TERM 4277 3869663 - 3869646 - g 73 -4.1 -4.80396 | overlap 3869638 3869648 GAAAACATCGAAAAA TCGACCT ATAT AGGTCTA GGCTTGATTATTCTC Shal_3168 3868833 - 3869747 + | hypothetical protein TERM 4278 3869777 - 3869795 + T 93 -10.3 -4.8622 | opp_overlap 3869770 TAAGTTAACCATTTA GCCGAAC CTAGT GTTCGGC TTTTTAGTTCAAAGG TERM 4279 3870280 - 3870266 - T 100 -8.5 -5.626 | opp_overlap 3870266 TATGTCATAAAAAAA GCCGC TCAAT GCGGC TTTTTATGTGGACTT TERM 4280 3870266 - 3870280 + T 90 -8.5 -4.98522 | opp_overlap 3870266 TATGTCATAAAAAAA GCCGC TCAAT GCGGC TTTTTATGTGGACTT Shal_3169 3871587 - 3870319 - | gamma-glutamyl phosphate reductase Shal_3170 3872702 - 3871584 - | gamma-glutamyl kinase TERM 4281 3872921 - 3872891 - R 83 -9.9 -3.91072 | opp_overlap 3872891, overlap 3872898 CTAAATCGCCATAAA TAGAAAAGCCACA TTGTG TGCAGCTTTTCTA TTGTGCAACTCGCAT TERM 4282 3872911 - 3872898 - R 70 -3.1 -4.84918 | gap 1, opp_overlap 3872891, overlap 3872891 GCCATAAATAGAAAA GC-CAC ATT GTGTGC AGCTTTTCTATTGTG Shal_3171 3874260 - 3872971 - | xanthine/uracil/vitamin C permease TERM 4283 3874600 - 3874584 - R 75 -9.5 -3.41527 | GAATTTCTACGATAA GTTAGAC TGC GTCTAAC AATTAAAGTCACGGC TERM 4284 3875156 - 3875143 - R 76 -6.7 -4.39002 | opp_overlap 3875143 3875138 3875135 AAATCCCTTATAAAA CCTAC TGTT GTAGG TTTTGTGGTTGTCCA TERM 4285 3875143 - 3875156 + r 79 -6.7 -4.58466 | opp_overlap 3875143, overlap 3875138 3875135 AAATCCCTTATAAAA CCTAC TGTT GTAGG TTTTGTGGTTGTCCA Shal_3172 3877370 - 3875325 - | pentapeptide repeat-containing protein TERM 4286 3876434 - 3876450 + g 85 -12.3 -3.32819 | CGTCGACCCATGTCG CGCCAAC GAG GTTGGCG TTATCAAAATCTGTA TERM 4287 3877908 - 3877880 - R 72 -4.6 -4.7497 | overlap 3877881 3877882 TTTAGGCAGCAAAAA TTGGCTCATAGA TTAAT TCTATGAGCAGA GATGATTTTAGGAAT Shal_3173 3878904 - 3877927 - | hypothetical protein TERM 4288 3879182 - 3879164 - R 100 -10.3 -6.13 | ACAGGCAAAAAAAAA CCAGCTC AAAGA GAGCTGG TAAGACATTTCAAGT TERM 4289 3879291 - 3879279 - R 72 -9.1 -3.38224 | opp_overlap 3879279, overlap 3879277 ACTTGAGTCTAAACA CACCC AAA GGGTG TTATAAGGTTGATGG TERM 4290 3879279 - 3879291 + r 72 -9.1 -3.37464 | opp_overlap 3879279 3879277 ACTTGAGTCTAAACA CACCC AAA GGGTG TTATAAGGTTGATGG Shal_3174 3879430 - 3879332 - | hypothetical protein TERM 4291 3879973 - 3879955 - H 100 -14.6 -6.02914 | TTTAGATAAAAAAAA GCCCACTC AAT GAGTGGGC AAGACATTTCAAGTG TERM 4292 3880433 - 3880415 - H 72 -9 -3.41051 | GTAGTTTTATTACAA GCTTTTTT ATT AAAAAAGC GTAAAAAAGCCACTT TERM 4293 3880621 - 3880607 - H 71 -6.4 -4.20749 | overlap 3880597 3880595 CAAGAGCGCAACAAA GCCGTT GCA AACGAC TCTGCGGTGCACAAA Shal_3175 3880735 - 3882195 + | aminoacyl-histidine dipeptidase TERM 4294 3882243 - 3882222 - T 100 -13.1 -4.02817 | opp_overlap 3882222 GGTTTATAAGAATAA GGCCACTTA GTCA TAAGTGGCC TTTATTATTTCTAGA TERM 4295 3882222 - 3882243 + T 100 -13.1 -4.63048 | opp_overlap 3882222 GGTTTATAAGAATAA GGCCACTTA GTCA TAAGTGGCC TTTATTATTTCTAGA Shal_3176 3883360 - 3882284 - | DNA polymerase IV Shal_3177 3883737 - 3883489 - | hypothetical protein TERM 4296 3883918 - 3883936 + r 83 -7.4 -4.77157 | opp_overlap 3883918 AAGCGAAATCAAAAA GAGACGCT TAA AGCATCTC TTTTTAATCAATTAA TERM 4297 3883936 - 3883918 - R 93 -9.6 -5.01042 | opp_overlap 3883918 AAGCGAAATCAAAAA GAGACGCT TAA AGCATCTC TTTTTAATCAATTAA Shal_3178 3884428 - 3883961 - | bacterioferritin Shal_3179 3884908 - 3884441 - | bacterioferritin TERM 4298 3885258 - 3885241 - R 100 -4.8 -5.93252 | opp_overlap 3885241 GCTAAAAATAAAAAA GGCTCC AACGAA GGAACC TTAATTTGCGCAGAG Shal_3180 3885503 - 3885282 - | hypothetical protein Shal_3181 3886532 - 3885516 - | ApbE family lipoprotein TERM 4299 3886510 - 3886488 - G 86 -2.7 -5.64421 | AGCTGAAATAAAAAA GGCTAGC CCAATAACT GCTAACC ATTTCACCAAGATCT Shal_3182 3887909 - 3886662 - | Na(+)-translocating NADH-quinone reductase subunit F Shal_3183 3888563 - 3887955 - | Na(+)-translocating NADH-quinone reductase subunit E Shal_3184 3889201 - 3888569 - | Na(+)-translocating NADH-quinone reductase subunit D Shal_3185 3889998 - 3889201 - | Na(+)-translocating NADH-quinone reductase subunit C Shal_3186 3891190 - 3889991 - | Na(+)-translocating NADH-quinone reductase subunit B Shal_3187 3892530 - 3891190 - | Na(+)-translocating NADH-quinone reductase subunit A TERM 4300 3892162 - 3892148 - G 74 -8.6 -3.90586 | opp_overlap 3892148 AGAGCAGTCCACAAA CCTGAT TGG ATCAGG TTGTCACGTACTTGC TERM 4301 3893113 - 3893141 + r 75 -10.5 -3.06796 | opp_overlap 3893107 3893103, overlap 3893115 3893119 CAAAATGCAGACTTA TACCAATCACA ATAAATA TGTGATTGGTA TTAACTCCAATACCA TERM 4302 3893185 - 3893154 - R 79 -11 -3.10464 | opp_overlap 3893162, overlap 3893162 GTATTAACTCCAATA CCAAAAAAGACGAC CGCA GCCGTCTTTTTTTG AATCAAGTAATCAAG TERM 4303 3893162 - 3893177 + r 86 -4.6 -5.47218 | opp_overlap 3893154 3893162 TCCAATACCAAAAAA GACGAC CGCA GCCGTC TTTTTTTGAATCAAG TERM 4304 3893177 - 3893162 - R 89 -6.8 -5.27779 | opp_overlap 3893162, overlap 3893154 TCCAATACCAAAAAA GACGAC CGCA GCCGTC TTTTTTTGAATCAAG Shal_3188 3893720 - 3893211 - | S-ribosylhomocysteinase TERM 4305 3893997 - 3894016 + r 79 -9.2 -3.95986 | opp_overlap 3893997 AGTAGATACAAAAAA GCCACAGC GATA GCCGTGGC TTTAATTCAATTAGC TERM 4306 3894016 - 3893997 - R 100 -11.4 -5.43414 | opp_overlap 3893997 AGTAGATACAAAAAA GCCACAGC GATA GCCGTGGC TTTAATTCAATTAGC Shal_3189 3894386 - 3894066 - | BolA family protein Shal_3190 3895169 - 3894495 - | 2OG-Fe(II) oxygenase TERM 4307 3894812 - 3894833 + g 84 -8.7 -4.57341 | opp_overlap 3894815, overlap 3894815 AGACTCCATTACTAT TAAGCCCGA ACTC TCGGGCTAA TTTTTGCCGCAGCTT TERM 4308 3894815 - 3894830 + g 74 -10.4 -3.23708 | opp_overlap 3894815, overlap 3894812 CTCCATTACTATTAA GCCCGA ACTC TCGGGC TAATTTTTGCCGCAG TERM 4309 3894830 - 3894815 - G 74 -10.4 -3.23216 | opp_overlap 3894815 3894812 CTCCATTACTATTAA GCCCGA ACTC TCGGGC TAATTTTTGCCGCAG Shal_3191 3895241 - 3896539 + | rRNA (guanine-N(2)-)-methyltransferase TERM 4310 3896589 - 3896559 - T 86 -9.9 -4.09685 | opp_overlap 3896559 3896565 3896587, overlap 3896565 TTCTAGCCTCGAAAA TAAAAACCACCTT CTAAT AAGGTGGTTTTTG TTATAAGCAATGGCT TERM 4311 3896559 - 3896589 + T 86 -12.1 -3.30243 | opp_overlap 3896559 3896565, overlap 3896565 3896587 TTCTAGCCTCGAAAA TAAAAACCACCTT CTAAT AAGGTGGTTTTTG TTATAAGCAATGGCT TERM 4312 3896565 - 3896583 + T 93 -8.9 -5.18726 | opp_overlap 3896565 3896559, overlap 3896559 CCTCGAAAATAAAAA CCACCTT CTAAT AAGGTGG TTTTTGTTATAAGCA TERM 4313 3896583 - 3896565 - T 95 -8.9 -5.45802 | opp_overlap 3896559 3896565, overlap 3896559 CCTCGAAAATAAAAA CCACCTT CTAAT AAGGTGG TTTTTGTTATAAGCA Shal_3192 3897710 - 3896646 - | hypothetical protein TERM 4314 3897896 - 3897866 - R 100 -13.5 -4.85195 | opp_overlap 3897869 3897874, overlap 3897874 AAAACAAGCTAAAAA CAATAAAAGCGCC TTAAT GGCGCTTTTATTA ATTGATCCCGATTTT TERM 4315 3897869 - 3897893 + r 93 -13 -3.40073 | opp_overlap 3897866 3897874, overlap 3897874 ACAAGCTAAAAACAA TAAAAGCGCC TTAAT GGCGCTTTTA TTAATTGATCCCGAT TERM 4316 3897888 - 3897874 - R 90 -8.5 -5.16681 | opp_overlap 3897869 3897874, overlap 3897866 CTAAAAACAATAAAA GCGCC TTAAT GGCGC TTTTATTAATTGATC TERM 4317 3897874 - 3897888 + r 88 -8.5 -4.80178 | opp_overlap 3897874 3897866, overlap 3897869 CTAAAAACAATAAAA GCGCC TTAAT GGCGC TTTTATTAATTGATC Shal_3193 3898495 - 3897938 - | OmpA domain-containing protein Shal_3194 3898703 - 3899275 + | hypothetical protein Shal_3195 3899307 - 3899903 + | peptidyl-prolyl cis-trans isomerase cyclophilin type Shal_3196 3900032 - 3900352 + | hypothetical protein TERM 4318 3900432 - 3900457 + F 95 -11.2 -5.11063 | opp_overlap 3900432 CTAAGCTCTACCAAA GCCCAGACCA CTATTT TGGTTTGGGC TTTTTATTGCCTGCT TERM 4319 3900457 - 3900432 - f 76 -9 -3.74747 | opp_overlap 3900432 CTAAGCTCTACCAAA GCCCAGACCA CTATTT TGGTTTGGGC TTTTTATTGCCTGCT Shal_3197 3900568 - 3901998 + | major facilitator transporter TERM 4320 3902052 - 3902094 + T 76 -7.2 -4.20367 | opp_overlap 3902059, overlap 3902059 GTGAGAGCTTAGAAT TAAAAAAGACGCTTAAAATA CAA TTTTTTAAGCGTCTTTAATG TTCTTTCTTCGCAGC TERM 4321 3902059 - 3902087 + T 91 -11.9 -4.05319 | opp_overlap 3902059, overlap 3902052 CTTAGAATTAAAAAA GACGCTTAAAATA CAA TTTTTTAAGCGTC TTTAATGTTCTTTCT TERM 4322 3902087 - 3902059 - T 100 -11.9 -5.32944 | opp_overlap 3902059 3902052 CTTAGAATTAAAAAA GACGCTTAAAATA CAA TTTTTTAAGCGTC TTTAATGTTCTTTCT TERM 4323 3902164 - 3902140 - T 88 -10.9 -4.09685 | CGTTAGCCGCGAAAA CGATTAATCAC GAA GTAATTAATCG CGGAAATTATTAAAC Shal_3198 3902643 - 3902158 - | nucleotide-binding protein Shal_3199 3902745 - 3903173 + | VanZ family protein Shal_3200 3903180 - 3904151 + | 2-dehydropantoate 2-reductase Shal_3201 3904326 - 3905822 + | sodium:neurotransmitter symporter TERM 4324 3906018 - 3906033 + T 89 -10.4 -4.28111 | opp_overlap 3906018 GGCTGAAAATAGAAA GGAGCC TTAA GGCTCC TTTATTCATGCTGTA TERM 4325 3906033 - 3906018 - T 90 -10.4 -4.45168 | opp_overlap 3906018 GGCTGAAAATAGAAA GGAGCC TTAA GGCTCC TTTATTCATGCTGTA Shal_3202 3907254 - 3906052 - | hypothetical protein Shal_3203 3907428 - 3908129 + | phosphoesterase PA-phosphatase related Shal_3204 3908492 - 3908292 - | hypothetical protein TERM 4326 3908460 - 3908481 + g 90 -14.5 -3.21416 | opp_overlap 3908460 CTGAGCTAACAAAAA GGGCAACGT ATAG ACGTTGCCC TTAATAATCACGGTA TERM 4327 3908481 - 3908460 - G 100 -14.5 -5.10461 | opp_overlap 3908460 CTGAGCTAACAAAAA GGGCAACGT ATAG ACGTTGCCC TTAATAATCACGGTA Shal_3205 3910086 - 3908524 - | AbgT putative transporter TERM 4328 3910049 - 3910069 + g 79 -9.7 -3.67724 | overlap 3910048 CCTAATATCCCTTGC GGCCCTTGA TCC TCAAGCGCC TGTTTATCTGCTTTC TERM 4329 3910258 - 3910225 - R 85 -9.1 -4.29738 | gap 1, opp_overlap 3910228 3910233, overlap 3910228 3910233 TTACATGGATCAAAA CAATAAAACCCTGACA TGA TG-CAGGGTTTTATTT TATTTAATAAGCCTA TERM 4330 3910255 - 3910228 - R 90 -10.8 -4.26327 | gap 1, opp_overlap 3910228 3910233, overlap 3910225 3910233 CATGGATCAAAACAA TAAAACCCTGACA TGA TG-CAGGGTTTTA TTTTATTTAATAAGC TERM 4331 3910228 - 3910255 + r 93 -10.8 -4.93877 | gap 1, opp_overlap 3910228 3910225 3910233, overlap 3910233 CATGGATCAAAACAA TAAAACCCTGACA TGA TG-CAGGGTTTTA TTTTATTTAATAAGC TERM 4332 3910250 - 3910233 - R 83 -6.3 -5.10656 | gap 1, opp_overlap 3910228 3910233, overlap 3910228 3910225 ATCAAAACAATAAAA CCCTGACA TGA TG-CAGGG TTTTATTTTATTTAA TERM 4333 3910233 - 3910250 + r 87 -6.3 -5.34857 | gap 1, opp_overlap 3910233 3910228 3910225, overlap 3910228 ATCAAAACAATAAAA CCCTGACA TGA TG-CAGGG TTTTATTTTATTTAA Shal_3206 3911145 - 3910297 - | 2-dehydro-3-deoxyphosphooctonate aldolase TERM 4334 3911166 - 3911187 + r 75 -10.1 -3.1706 | TCTTCTCTCTTCGTG AGCCAAGGC CGAT GCCTTGGCA TTAATCAACTAAGTT Shal_3207 3912483 - 3911215 - | hypothetical protein TERM 4335 3912655 - 3912685 + r 79 -9.7 -3.72027 | opp_overlap 3912656 3912663, overlap 3912656 3912658 GAAGCGGCTACATCA ACACAAAAGGGCC ATTAA GGCCCTATTGTGA TTCTTAATGGAAAGT TERM 4336 3912684 - 3912656 - R 91 -13.2 -3.26319 | opp_overlap 3912655 3912656 3912658, overlap 3912663 AAGCGGCTACATCAA CACAAAAGGGCC ATTAA GGCCCTATTGTG ATTCTTAATGGAAAG TERM 4337 3912656 - 3912684 + r 90 -13.2 -2.82895 | opp_overlap 3912656 3912663, overlap 3912655 3912658 AAGCGGCTACATCAA CACAAAAGGGCC ATTAA GGCCCTATTGTG ATTCTTAATGGAAAG TERM 4338 3912658 - 3912682 + r 75 -10 -2.96249 | opp_overlap 3912656 3912663, overlap 3912656 3912655 GCGGCTACATCAACA CAAAAGGGCC ATTAA GGCCCTATTG TGATTCTTAATGGAA TERM 4339 3912677 - 3912663 - R 88 -8.5 -4.7219 | opp_overlap 3912658 3912656 3912655, overlap 3912656 TACATCAACACAAAA GGGCC ATTAA GGCCC TATTGTGATTCTTAA Shal_3208 3913477 - 3912689 - | hypothetical protein Shal_3209 3913872 - 3913477 - | invasion gene expression up-regulator SirB TERM 4340 3914153 - 3914170 + r 100 -5.5 -5.86976 | opp_overlap 3914153 GCTTAAAATAAAAAA GGCACTA TCAA TCGTGCC TTTTTTGTTTTCTAA TERM 4341 3914170 - 3914153 - R 100 -5.5 -5.79595 | opp_overlap 3914153 GCTTAAAATAAAAAA GGCACTA TCAA TCGTGCC TTTTTTGTTTTCTAA Shal_3210 3915038 - 3914196 - | HemK family modification methylase TERM 4342 3914979 - 3914951 - G 77 -11.2 -3.14051 | gap 1, overlap 3914949 TCACGTGCAGCAACA TGACCTCAGCATC AAGA GATGCTGAG-TCA GAGATACCTTCAAGC Shal_3211 3916171 - 3915086 - | peptide chain release factor 1 Shal_3212 3917435 - 3916185 - | glutamyl-tRNA reductase Shal_3213 3917705 - 3918364 + | outer membrane lipoprotein LolB Shal_3214 3918361 - 3919215 + | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Shal_3215 3919253 - 3920227 + | ribose-phosphate pyrophosphokinase TERM 4343 3920298 - 3920269 - T 83 -12.3 -2.71268 | opp_overlap 3920275, overlap 3920275 TCGTATGATAGAGCA TAAAAACGCACTC CTTG GAGTGCGTTTTTT TATACCTAAAAATCA TERM 4344 3920292 - 3920275 - T 95 -11.3 -4.96762 | opp_overlap 3920275, overlap 3920269 GATAGAGCATAAAAA CGCACTC CTTG GAGTGCG TTTTTTTATACCTAA TERM 4345 3920275 - 3920292 + T 100 -11.3 -5.64274 | opp_overlap 3920275 3920269 GATAGAGCATAAAAA CGCACTC CTTG GAGTGCG TTTTTTTATACCTAA Shal_3216 3920738 - 3920322 - | hypothetical protein Shal_3217 3921242 - 3920784 - | hypothetical protein TERM 4346 3921570 - 3921541 - R 100 -12.3 -4.94992 | opp_overlap 3921547, overlap 3921547 TGAAACGCAGAAAAA CAAAAAGCCCATC CGAA GATGGGCTTTTCA ATATATGGCTGGGGT TERM 4347 3921564 - 3921547 - R 100 -11.3 -5.69262 | opp_overlap 3921547, overlap 3921541 GCAGAAAAACAAAAA GCCCATC CGAA GATGGGC TTTTCAATATATGGC TERM 4348 3921547 - 3921564 + r 93 -11.3 -4.26188 | opp_overlap 3921541 3921547 GCAGAAAAACAAAAA GCCCATC CGAA GATGGGC TTTTCAATATATGGC TERM 4349 3923300 - 3923334 + r 72 -10.1 -2.60032 | opp_overlap 3923305, overlap 3923298 3923305 GTAGAGCCTGGAAAC AAAAACGGCGACTAA ATAAA TTAGCCGCCGTTTTA CATTTTTAGCAAAAG TERM 4350 3923329 - 3923305 - R 100 -12.2 -5.27335 | opp_overlap 3923305 3923300 3923298 GCCTGGAAACAAAAA CGGCGACTAA ATAAA TTAGCCGCCG TTTTACATTTTTAGC TERM 4351 3923305 - 3923329 + r 91 -10 -4.4874 | opp_overlap 3923305, overlap 3923300 3923298 GCCTGGAAACAAAAA CGGCGACTAA ATAAA TTAGCCGCCG TTTTACATTTTTAGC Shal_3218 3924449 - 3923358 - | translation-associated GTPase TERM 4352 3923928 - 3923947 + g 76 -4.2 -5.0133 | overlap 3923930 ACGTAGCATTTTGCC TTCGTCCA ATAG TGGGCGCA TTTTTTCAAGCACTG TERM 4353 3924495 - 3924477 - R 71 -9.6 -2.87012 | opp_overlap 3924477 3924475, overlap 3924471 3924474 AATATCAATGAATGA CTTGAAGC CAT GCTCCAAG TACTTGTTTATGCCT Shal_3219 3925087 - 3924503 - | peptidyl-tRNA hydrolase TERM 4354 3925309 - 3925327 + r 85 -7.5 -4.90906 | opp_overlap 3925309, overlap 3925303 AATCGACAAAAAAAA CCGAATA CATAA TATTCGG TTTTTCATCTTATGC TERM 4355 3925327 - 3925309 - R 100 -8.2 -5.97575 | opp_overlap 3925309 3925303 AATCGACAAAAAAAA CCGAATAC ATA ATATTCGG TTTTTCATCTTATGC Shal_3220 3926598 - 3925399 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase Shal_3221 3926937 - 3927251 + | hypothetical protein Shal_3222 3927348 - 3928775 + | tRNA-i(6)A37 thiotransferase enzyme MiaB TERM 4356 3928830 - 3928809 - f 86 -10.1 -4.04355 | opp_overlap 3928810, overlap 3928810 AAAAAACACACTAAA GGCGGCATC CTGA GATGCCGCT TTTTTCTTCTTAATT TERM 4357 3928829 - 3928810 - f 93 -13.6 -3.00173 | opp_overlap 3928810, overlap 3928809 AAAAACACACTAAAG GCGGCATC CTGA GATGCCGC TTTTTTCTTCTTAAT TERM 4358 3928810 - 3928829 + F 100 -13.6 -5.66229 | opp_overlap 3928810 3928809 AAAAACACACTAAAG GCGGCATC CTGA GATGCCGC TTTTTTCTTCTTAAT TERM 4359 3929548 - 3929527 - g 74 -5.8 -4.66609 | opp_overlap 3929527 GACTTGAGTCAAAAA GTGGACCC TTATCT GCGTCCAC TTTACGATGCGCTGT Shal_3223 3928957 - 3929997 + | PhoH family protein Shal_3224 3929990 - 3930460 + | putative metalloprotease TERM 4360 3930494 - 3930484 - g 74 -5.4 -4.69656 | AATGAGTCAAGAAAA CACT ATG AGTG ACGATATCCCACCGA Shal_3225 3930470 - 3931369 + | CBS domain-containing protein TERM 4361 3931445 - 3931489 + G 84 -8.4 -4.65263 | opp_overlap 3931454 TAGCCCATCATCCGC GCTCGAAAATGGTGCTAGCC TACGC GGCTGGCGCCACTACCGCGC TTTCTTTTGCCCCCT TERM 4362 3931480 - 3931454 - g 73 -7.9 -4.07687 | opp_overlap 3931445 ATCCGCGCTCGAAAA TGGTGCTAGCC TACGC GGCTGGCGCCA CTACCGCGCTTTCTT Shal_3226 3931408 - 3932961 + | apolipoprotein N-acyltransferase TERM 4363 3933030 - 3933051 + T 100 -10.2 -5.47218 | overlap 3933014 CTGCTAGCTTGTTCA TAGCGGCT TGGTCT AGCCGCTA TTTTTTTGCCTCAAG Shal_3227 3933607 - 3933107 - | hypothetical protein TERM 4364 3934022 - 3934008 - g 71 -7.8 -3.98256 | overlap 3934006 CCGCTATCAAAAATA GCACAG CGC CTGCGC CTTGGACTTACGAAA TERM 4365 3935294 - 3935278 - g 79 -10.9 -3.39521 | overlap 3935274 TCCAGCAAAAGCCAA CTACTGG TTA CCAGTAG ACCAATACATTGGTG Shal_3228 3933701 - 3936307 + | leucyl-tRNA synthetase TERM 4366 3936362 - 3936406 + G 72 -9.4 -3.60098 | gap 2, opp_overlap 3936369, overlap 3936363 ATAAAACGCATACTT TTAGCAACCTTGGCACTGAGCA TTT TGCTCAGTGCC--GGTTGCGGC TTTAGACTACAAGGT TERM 4367 3936363 - 3936405 + G 81 -12.9 -2.75844 | gap 2, opp_overlap 3936369, overlap 3936362 TAAAACGCATACTTT TAGCAACCTTGGCACTGAGCA TTT TGCTCAGTGCC--GGTTGCGG CTTTAGACTACAAGG TERM 4368 3936399 - 3936369 - g 77 -11.3 -3.16191 | gap 2, opp_overlap 3936363 3936362 GCATACTTTTAGCAA CCTTGGCACTGAGCA TTT TGCTCAGTGCC--GG TTGCGGCTTTAGACT Shal_3229 3936341 - 3936835 + | rare lipoprotein B TERM 4369 3937012 - 3936980 - g 70 -9.1 -3.41024 | opp_overlap 3936989, overlap 3936978 GTTTTGAAGAGAAGA TCCAGCTCACCCAAG AAA CTGGGTTTAGCTGGA ATGAGCTTTTCGAGC TERM 4370 3937643 - 3937626 - g 72 -6.3 -4.31397 | gap 1, opp_overlap 3937625, overlap 3937612 AGCGGCACAAAACAA CCCTG-AG CCG CTGCAGGG AGTTTGGAGTAAATT Shal_3230 3936835 - 3937866 + | DNA polymerase III, delta subunit Shal_3231 3937885 - 3938535 + | nicotinate (nicotinamide) nucleotide adenylyltransferase Shal_3232 3938634 - 3938963 + | iojap-like protein TERM 4371 3939329 - 3939307 - g 76 -4.7 -4.74504 | opp_overlap 3939307 ACCTGAATGCAAAAA GGCCGCAGC ACAAA GCTGGTGCC TATCTGCCTTAACCC Shal_3233 3938963 - 3939433 + | SPOUT methyltransferase superfamily protein TERM 4372 3939824 - 3939814 - g 72 -3.2 -4.92239 | CGAAAAAGTTAAAAA CGTC AGT GACA CCTTAGATGAACTCA TERM 4373 3940327 - 3940307 - g 71 -3.9 -4.73388 | overlap 3940294 AAGCTTCAGCAAAAA GCGATGGAG TTG CTCAATGGC CGACGAGGCTCTGTT Shal_3234 3939518 - 3941371 + | peptidoglycan glycosyltransferase Shal_3235 3941371 - 3942477 + | rod shape-determining protein RodA Shal_3236 3942615 - 3943613 + | lytic murein transglycosylase B TERM 4374 3944230 - 3944214 - g 70 -5.1 -4.40572 | overlap 3944204 AGAACGCTTAGAAAA CTTAGCT AAT AGCTTAG AGAAAAAGTACCAAG TERM 4375 3944359 - 3944347 - g 70 -9.1 -3.47011 | GAAAAACTCAAGCAA GAGGG TTA CCCTC AAAGTTACCTGCTTA Shal_3237 3943600 - 3944382 + | rare lipoprotein A Shal_3238 3944487 - 3945659 + | Serine-type D-Ala-D-Ala carboxypeptidase TERM 4376 3945675 - 3945704 + F 100 -15.1 -3.16088 | opp_overlap 3945675 3945678 3945682, overlap 3945675 3945678 ACCATACTGTATATA CCATGAAGCCACC TTAA GGTGGCTTCATGC GTTTTAATCCCCTAT TERM 4377 3945675 - 3945705 + F 100 -14.9 -4.27617 | gap 1, opp_overlap 3945675 3945678 3945682, overlap 3945675 3945678 ACCATACTGTATATA C-CATGAAGCCACC TTAA GGTGGCTTCATGCG TTTTAATCCCCTATA TERM 4378 3945704 - 3945675 - f 95 -15.1 -2.90941 | opp_overlap 3945675 3945675 3945678, overlap 3945678 3945682 ACCATACTGTATATA CCATGAAGCCACC TTAA GGTGGCTTCATGC GTTTTAATCCCCTAT TERM 4379 3945678 - 3945701 + F 95 -15.4 -2.77781 | opp_overlap 3945678 3945675 3945682, overlap 3945675 3945675 ATACTGTATATACCA TGAAGCCACC TTAA GGTGGCTTCA TGCGTTTTAATCCCC TERM 4380 3945701 - 3945678 - f 95 -15.4 -2.69977 | opp_overlap 3945675 3945675 3945678, overlap 3945675 3945682 ATACTGTATATACCA TGAAGCCACC TTAA GGTGGCTTCA TGCGTTTTAATCCCC TERM 4381 3945697 - 3945682 - f 75 -10.4 -3.26545 | opp_overlap 3945678 3945675 3945675, overlap 3945678 3945675 TGTATATACCATGAA GCCACC TTAA GGTGGC TTCATGCGTTTTAAT Shal_3239 3945792 - 3946058 + | hypothetical protein TERM 4382 3946073 - 3946102 + F 86 -10.3 -4.10657 | opp_overlap 3946066 3946073, overlap 3946080 AATATTAATCATTAA TGATAAATGTGAT CCGT ATTACATTTATCA TTTTGAAGCGTATAA Shal_3240 3946153 - 3946812 + | lipoate-protein ligase B Shal_3241 3946805 - 3947770 + | lipoyl synthase TERM 4383 3947785 - 3947814 + T 100 -12.3 -4.47049 | opp_overlap 3947791, overlap 3947791 AACCCTCTGCCCATA GAAAAATAGCGCC CATT GGCGCTATTTTTG TTTCTGTTTCTATTT TERM 4384 3947808 - 3947791 - T 95 -11.3 -4.96848 | opp_overlap 3947785 3947791 CTGCCCATAGAAAAA TAGCGCC CATT GGCGCTA TTTTTGTTTCTGTTT TERM 4385 3947791 - 3947808 + T 100 -11.3 -5.48623 | opp_overlap 3947791, overlap 3947785 CTGCCCATAGAAAAA TAGCGCC CATT GGCGCTA TTTTTGTTTCTGTTT Shal_3242 3948307 - 3947870 - | ribosomal-protein-alanine acetyltransferase Shal_3243 3948654 - 3948307 - | hypothetical protein TERM 4386 3948851 - 3948834 - H 100 -12.7 -5.1287 | opp_overlap 3948834 TGTAGATGCAAAAAA GCCGAGC AATT GCTCGGC TTTTTCAAATTTGGC TERM 4387 3948834 - 3948851 + H 100 -12.7 -4.70879 | opp_overlap 3948834 TGTAGATGCAAAAAA GCCGAGC AATT GCTCGGC TTTTTCAAATTTGGC TERM 4388 3949141 - 3949124 - H 100 -12.7 -5.14477 | opp_overlap 3949124 GACAGATGCAAAAAA GCCGAGC TAAT GCTCGGC TTTTTCAAATTTGGC TERM 4389 3949124 - 3949141 + H 100 -12.7 -4.70879 | opp_overlap 3949124 GACAGATGCAAAAAA GCCGAGC TAAT GCTCGGC TTTTTCAAATTTGGC TERM 4390 3949550 - 3949564 + H 73 -8.6 -3.71284 | AGTTGCCTCCCTACA GCAATC ACA GATTGC TTATATTAATCGCAC TERM 4391 3950028 - 3950049 + H 100 -17.3 -5.3671 | opp_overlap 3950028 GCATATACGAAAAAA GCCCGCTGC GTTA GCAGCGGGC TTTTTTGCTTCTCTT TERM 4392 3950049 - 3950028 - H 100 -17.3 -5.24989 | opp_overlap 3950028 GCATATACGAAAAAA GCCCGCTGC GTTA GCAGCGGGC TTTTTTGCTTCTCTT TERM 4393 3950369 - 3950334 - H 100 -17.8 -4.68593 | gap 1, opp_overlap 3950342, overlap 3950342 CGTACCAGCCAAAAA CGAAAAAAGCCCGCTAC ATC GTAGCGGGCTTTCT-CG CTTCTCTTTCGAGAA TERM 4394 3950342 - 3950362 + H 100 -16.9 -4.0174 | opp_overlap 3950334 3950342 CCAAAAACGAAAAAA GCCCGCTAC ATC GTAGCGGGC TTTCTCGCTTCTCTT TERM 4395 3950362 - 3950342 - H 100 -16.9 -5.54079 | opp_overlap 3950342, overlap 3950334 CCAAAAACGAAAAAA GCCCGCTAC ATC GTAGCGGGC TTTCTCGCTTCTCTT TERM 4396 3951807 - 3951818 + H 72 -4.4 -4.7254 | CCTCTTGCGAGTTTG CACA GTAC TGTG TTTTTGATAAACAGT TERM 4397 3952313 - 3952329 + H 86 -9.4 -4.08546 | overlap 3952295 TTGGTCTTTCGGCGA GGGGGT TTTTC ACCCCC TTTATCGTTACTCAT TERM 4398 3953111 - 3953123 + H 85 -9.1 -4.2354 | AGGTTCTATTTCACT CCCCT CAC AGGGG TTCTTTTCGCCTTTC TERM 4399 3953678 - 3953700 + H 73 -2.1 -5.2015 | ACTGTAACTAATGGT TTCTACTTT CGCCA AAATTAGAA TTTTTATCTTATTGC TERM 4400 3953748 - 3953763 + H 77 -6.2 -4.60041 | opp_overlap 3953742 3953746 3953748, overlap 3953743 GCCAACAAGCTAAGA CACTTA ATGT TAAGTG TTTTTAGAACTCAAT TERM 4401 3953889 - 3953921 + H 79 -10.8 -3.12142 | opp_overlap 3953890, overlap 3953887 3953885 3953896 GAGCGGGCTTAAAAA AGCCAAAGATAAAT TCTGC ATTTATCTTTGGCA TCTCTTACCTGTGCA TERM 4402 3953920 - 3953890 - H 100 -14.3 -5.00884 | opp_overlap 3953889 3953887 3953885 3953896 AGCGGGCTTAAAAAA GCCAAAGATAAAT TCTGC ATTTATCTTTGGC ATCTCTTACCTGTGC TERM 4403 3954113 - 3954080 - H 73 -7 -4.15854 | AAATTTACGTTAAAA CAAAATCTTTCTTT AGGAGA AAATAAAGATTTTG GTGGGTCAGAGTGGA TERM 4404 3955911 - 3955928 + H 79 -9.9 -3.6215 | TAAGTAATTTTTTGA TTGCCTC GTGA GAGGCAA TTTCGAATAACTTAA Shal_3244 3956620 - 3957132 + | hypothetical protein TERM 4405 3957197 - 3957170 - T 100 -15.8 -3.05384 | opp_overlap 3957170 3957175, overlap 3957175 CTCGGCTTTAGCCAA GAAAACAGACTC AATT GAGTCTGTTTTC TTATCGAGTCACACT TERM 4406 3957170 - 3957197 + T 100 -15.8 -3.32963 | opp_overlap 3957170 3957175, overlap 3957175 CTCGGCTTTAGCCAA GAAAACAGACTC AATT GAGTCTGTTTTC TTATCGAGTCACACT TERM 4407 3957192 - 3957175 - T 93 -9.9 -4.67982 | opp_overlap 3957175 3957170, overlap 3957170 CTTTAGCCAAGAAAA CAGACTC AATT GAGTCTG TTTTCTTATCGAGTC TERM 4408 3957175 - 3957192 + T 93 -9.9 -4.78237 | opp_overlap 3957170 3957175, overlap 3957170 CTTTAGCCAAGAAAA CAGACTC AATT GAGTCTG TTTTCTTATCGAGTC Shal_3245 3957555 - 3957211 - | hypothetical protein TERM 4409 3957755 - 3957776 + r 100 -13.1 -3.88442 | opp_overlap 3957755 TTTTTAAACAAAAAA GGCTTCAAC TCAT GTTGAAGCC TTTAGTACTATTTTA TERM 4410 3957776 - 3957755 - R 100 -13.1 -5.63517 | opp_overlap 3957755 TTTTTAAACAAAAAA GGCTTCAAC TCAT GTTGAAGCC TTTAGTACTATTTTA Shal_3246 3960423 - 3957850 - | ATPase TERM 4411 3959425 - 3959448 + g 73 -4.4 -4.74453 | overlap 3959428 CACCAATACTTTTTG GAAGCGACGC TCAA GCGCTGCATC TTTTTCAATATATTG TERM 4412 3960642 - 3960628 - R 70 -3.6 -4.9138 | overlap 3960633 3960636 ACTATTTAAACAAAA TCAAGT CAG ACTTAA CGATTAAGCCAAATA Shal_3247 3961385 - 3960639 - | hypothetical protein TERM 4413 3961313 - 3961294 - G 78 -6.4 -4.64766 | opp_overlap 3961293 3961294 TTGAGACTGGAAAAA GGTGGC AAACTGCA GCCACC CTCTTTAGTAGAAAA TERM 4414 3961361 - 3961330 - G 100 -11.6 -4.91109 | opp_overlap 3961330 3961356 3961357 3961360, overlap 3961334 3961356 3961357 TCTTTAGTAGAAAAA GCCAGGTTTACCCC TGGA GGGATAAACCAAGC TTGATTTTCTAGCTT TERM 4415 3961357 - 3961334 - G 77 -11.8 -2.89738 | opp_overlap 3961330 3961356, overlap 3961330 3961356 TAGTAGAAAAAGCCA GGTTTACCCC TGGA GGGATAAACC AAGCTTGATTTTCTA Shal_3248 3962356 - 3961382 - | RluA family pseudouridine synthase TERM 4416 3962561 - 3962550 - g 71 -3.6 -4.77036 | CTGTAGTAGTAAAAA GGGC GAAG ACCC TCAGATGACAAAAAG Shal_3249 3962434 - 3963240 + | putative lipoprotein TERM 4417 3963272 - 3963294 + T 100 -7.7 -5.7946 | opp_overlap 3963275, overlap 3963275 TATTTGACGATGAAT AAAGGCCTC TTTTT GAGGCCTTA TTTTTTTGTTCAAAA TERM 4418 3963291 - 3963275 - T 89 -9.4 -4.2704 | opp_overlap 3963272 3963275 TTGACGATGAATAAA GGCCTC TTTTT GAGGCC TTATTTTTTTGTTCA TERM 4419 3963275 - 3963291 + T 93 -9.4 -4.96435 | opp_overlap 3963275, overlap 3963272 TTGACGATGAATAAA GGCCTC TTTTT GAGGCC TTATTTTTTTGTTCA Shal_3250 3965494 - 3963365 - | exporter of the RND superfamily protein-like protein TERM 4420 3963810 - 3963799 - G 74 -5.8 -4.64676 | GTATGCTCAATAAAA TCGC GAGG GCGA CCAGAGCGATCGCAA TERM 4421 3965307 - 3965322 + g 72 -9 -3.53012 | overlap 3965315 TTTGACTCCTTGTCT CGCCAA TCCT TTGGCG TTTCCAACAGAAGCC TERM 4422 3965810 - 3965794 - R 70 -9.5 -2.62616 | opp_overlap 3965796, overlap 3965796 TCAGTCGGTAGAGCA GAGGATT GAA AATCCTC GTGTCCCTGGTTCGA TERM 4423 3965932 - 3965918 - R 90 -11.4 -3.83502 | opp_overlap 3965918 TATCGCTACACTAAA CCTCGC ACT GCGAGG TTTTTTTATGCCTAT TERM 4424 3965918 - 3965932 + r 100 -11.4 -5.65177 | opp_overlap 3965918 TATCGCTACACTAAA CCTCGC ACT GCGAGG TTTTTTTATGCCTAT TERM 4425 3965992 - 3966011 + r 93 -13.6 -3.14344 | opp_overlap 3965992 AATCTGCATAAAAAA GCCTCGAG ATAA CTCGAGGC TTAATAAAAACCGTC TERM 4426 3966011 - 3965992 - R 100 -13.6 -5.25803 | opp_overlap 3965992 AATCTGCATAAAAAA GCCTCGAG ATAA CTCGAGGC TTAATAAAAACCGTC Shal_3251 3967942 - 3966080 - | methyl-accepting chemotaxis sensory transducer TERM 4427 3966653 - 3966630 - G 72 -10.4 -2.78935 | gap 1, opp_overlap 3966642, overlap 3966618 AGATCTGCCACCACA GCAGCAGACTC ATT GA-TCTGCTGC GCCAGCAACTCAATT TERM 4428 3966642 - 3966666 + g 72 -5.7 -4.44245 | opp_overlap 3966630 ACAGCAGCAGACTCA TTGATCTGCTG CGC CAGCAACTCAA TTTTCTCAATCGTCT TERM 4429 3966696 - 3966710 + g 73 -10 -3.42996 | TGCTGCACACCCACC TGCCCA GTT TGGGCA TTGTCGTGGGTCATA Shal_3252 3968183 - 3969130 + | ornithine cyclodeaminase TERM 4430 3969169 - 3969189 + F 93 -7.6 -5.4251 | opp_overlap 3969163 3969169 CTTGAAGCATAAAAA GAGAAGCT CATTC GGCTTCTC TTTTTTATATATCAA TERM 4431 3969189 - 3969169 - f 84 -6.9 -4.98255 | opp_overlap 3969169, overlap 3969163 CTTGAAGCATAAAAA GAGAAGC TCATTCG GCTTCTC TTTTTTATATATCAA Shal_3253 3969353 - 3969907 + | ECF subfamily RNA polymerase sigma-24 factor Shal_3254 3969900 - 3970430 + | hypothetical protein Shal_3255 3970433 - 3971374 + | hypothetical protein TERM 4432 3971396 - 3971416 + T 100 -14.1 -5.07275 | opp_overlap 3971396 TCATTTAAACAAAAA GGGCTCTTA AAT TAAGAGCCC TTTTTGTATCTATCA TERM 4433 3971416 - 3971396 - T 100 -14.1 -5.30616 | opp_overlap 3971396 TCATTTAAACAAAAA GGGCTCTTA AAT TAAGAGCCC TTTTTGTATCTATCA Shal_3256 3972341 - 3971649 - | pseudouridine synthase Shal_3257 3972472 - 3973092 + | hexapaptide repeat-containing transferase Shal_3258 3973326 - 3975410 + | endothelin-converting protein 1 TERM 4434 3975470 - 3975507 + F 93 -11.5 -4.64676 | opp_overlap 3975475, overlap 3975475 CAAGATATTAAAACT AAAAAGCCGTTGATG TCTCATTT CATCAACGGCTTTTC TTTTATTGCAACTAC TERM 4435 3975502 - 3975475 - f 95 -11.4 -5.1166 | opp_overlap 3975470 3975475 TATTAAAACTAAAAA GCCGTTGATG TCTCATTT CATCAACGGC TTTTCTTTTATTGCA TERM 4436 3975475 - 3975502 + F 100 -11.4 -5.27476 | opp_overlap 3975475, overlap 3975470 TATTAAAACTAAAAA GCCGTTGATG TCTCATTT CATCAACGGC TTTTCTTTTATTGCA TERM 4437 3975730 - 3975743 + G 73 -4.5 -4.83169 | gap 1 GATAACGGTAGCTAC GCC-GC TAA GCTGGC TTTTTCTAACAACCT Shal_3259 3975616 - 3976401 + | hypothetical protein TERM 4438 3976417 - 3976434 + F 93 -9.9 -5.04385 | opp_overlap 3976413 3976432 CGCAAAAAACTCTAA GGCCTTA TCAT TAAGGCC TTTTTTAGGCATGTA Shal_3260 3976753 - 3977157 + | hypothetical protein Shal_3261 3977211 - 3977711 + | hypothetical protein TERM 4439 3977903 - 3977946 + T 100 -9.2 -5.67063 | gap 1, opp_overlap 3977903, overlap 3977891 TTCTGCATTAAAAAA GCATCCATTGTATTTAAAACA TTC TGTTTAAAA-ATAGTGGATGC TTTTTTTGTGCTCGA TERM 4440 3977946 - 3977903 - T 79 -4.8 -5.14563 | gap 1, opp_overlap 3977891 3977903 TTCTGCATTAAAAAA GCATCCATTGTATTTAAAACA TTC TGTTTAAAA-ATAGTGGATGC TTTTTTTGTGCTCGA Shal_3262 3978616 - 3977993 - | glutathione S-transferase domain-containing protein Shal_3263 3978830 - 3979369 + | membrane-flanked domain-containing protein Shal_3264 3979472 - 3980737 + | putative manganese transporter Shal_3265 3980761 - 3981960 + | beta-lactamase Shal_3266 3982046 - 3982519 + | hypothetical protein TERM 4441 3982554 - 3982572 + F 100 -8.8 -5.75342 | opp_overlap 3982554 TGCAAGTTATTGAAA GCACTGTC AAT GGCGGTGC TTTTTTTTAAAGAAG TERM 4442 3982961 - 3982977 + F 71 -6.5 -4.21936 | ATCAGTATATAGATT TACTCGC TCA GCGAGAA TTTTGCGGTTCTGAG TERM 4443 3983237 - 3983227 - f 74 -4 -5.06961 | ACTAACAAAAACAAA GAAA AGG TTTC CAATGGACGATAACA Shal_3267 3983240 - 3984928 + | malate dehydrogenase TERM 4444 3984929 - 3984945 + T 70 -8.7 -3.40522 | CGAACCGCTTTTTAA GGTTCTG CTT CGGAACC TTATACTAACGAAGT TERM 4445 3984972 - 3984989 + T 100 -7.7 -5.93252 | opp_overlap 3984967 3984972 AAGTAGAAAGCAAAA GCAGTCA TATT TGGCTGC TTTTTTGTTTTTGGG TERM 4446 3984989 - 3984972 - T 73 -5.5 -4.64383 | opp_overlap 3984972, overlap 3984967 AAGTAGAAAGCAAAA GCAGTCA TATT TGGCTGC TTTTTTGTTTTTGGG TERM 4447 3985140 - 3985126 - T 70 -8.6 -3.34344 | CTAGGTTTTAAGCAA TCAAGC TCC GCTTGA TAAAGGTCGTGGCGT TERM 4448 3985188 - 3985174 - T 72 -10 -2.53581 | CACATTGGTAATGCA TCAGGC TGC GCCTGA CAAAAGTCGTAAATA Shal_3268 3985937 - 3985317 - | hypothetical protein Shal_3269 3987003 - 3985945 - | hypothetical protein TERM 4449 3987350 - 3987361 + r 70 -3 -5.00884 | CCAAGCGATTATGTC GTAT CAGC ATAC TTTTTTAAAAGCACT TERM 4450 3987541 - 3987531 - R 73 -8.2 -3.84246 | GTTTCAAGGATGAAA CCGC AGA GCGG CCAAGGATGGCTTTA TERM 4451 3987852 - 3987879 + r 82 -10.6 -3.53012 | overlap 3987856 ATAAACCAGAGTCAC GTGATGCCCACA CGGA TGTGGGCATAGC TTTCGCGGGGCAGGC TERM 4452 3987856 - 3987875 + r 81 -12.2 -2.64155 | overlap 3987852 ACCAGAGTCACGTGA TGCCCACA CGGA TGTGGGCA TAGCTTTCGCGGGGC TERM 4453 3988134 - 3988095 - R 77 -8.6 -3.90922 | opp_overlap 3988105 3988133, overlap 3988098 3988103 ACTCTTGTGAAAGAA TTAGGCAAGAGGGGGT TGCTGTTG ACCCCCTCTTGGCCGA GTGTGAGCTGGAAGC TERM 4454 3988131 - 3988098 - R 84 -12.5 -3.02371 | opp_overlap 3988105, overlap 3988095 3988103 CTTGTGAAAGAATTA GGCAAGAGGGGGT TGCTGTTG ACCCCCTCTTGGC CGAGTGTGAGCTGGA TERM 4455 3988126 - 3988103 - R 73 -9.6 -3.17492 | opp_overlap 3988105, overlap 3988098 3988095 GAAAGAATTAGGCAA GAGGGGGT TGCTGTTG ACCCCCTC TTGGCCGAGTGTGAG Shal_3270 3988759 - 3988181 - | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Shal_3271 3991113 - 3988843 - | nitrate reductase TERM 4456 3989948 - 3989964 + g 79 -3 -5.42198 | CGTGGTAAGACTGGG GTTGGT AAGCC ATCAAC TTTTATTTTTTCCAG TERM 4457 3991766 - 3991747 - R 100 -12.2 -5.5353 | opp_overlap 3991747 CACAGCAACAAAAAA GGCTATGG TTTC CCATAGCC TTTTTTAGCGTGCTA TERM 4458 3991747 - 3991766 + r 100 -12.2 -5.06451 | opp_overlap 3991747 CACAGCAACAAAAAA GGCTATGG TTTC CCATAGCC TTTTTTAGCGTGCTA Shal_3272 3992241 - 3991804 - | hypothetical protein TERM 4459 3992283 - 3992323 + r 82 -8.5 -4.20783 | gap 1, overlap 3992286 AAAATATTTCTACTC GCAGGCGCT-ATATTTTG AGTCTA CAAAATATCGGCGCCTCC TTTATTCAATACGAT Shal_3273 3992897 - 3992373 - | phosphoesterase PA-phosphatase related TERM 4460 3992916 - 3992931 + H 80 -10.4 -3.78934 | AGTGACCTTCCCGTT CGCCCT TTAG AGGGCG TTGTTATACAGGCAG Shal_3274 3993085 - 3994968 + | diguanylate cyclase TERM 4461 3994973 - 3994961 - f 70 -3.3 -4.93547 | overlap 3994962 GTAACCAAGCAAAAA TGAGC TAA GCTCC CCGAGACTAAGGTAC Shal_3275 3995079 - 3996323 + | putative iron-sulfur cluster binding protein TERM 4462 3996326 - 3996303 - T 88 -8.9 -4.65895 | gap 1, opp_overlap 3996300 CGCTGTATCGAAAAA GGCCTAGCGC GGGAT GCG-TAGGCC TAATCATCTCTCTCT Shal_3276 3996577 - 3996365 - | hypothetical protein Shal_3277 3997221 - 3996712 - | alkylhydroperoxidase TERM 4463 3998004 - 3997990 - g 79 -2.1 -5.50925 | gap 1, overlap 3997991 3997992 AAGCAATATAAAAAA GTCCCT GTGC AGGG-C AATTTAACCTCAAGA Shal_3278 3997363 - 3998256 + | LysR family transcriptional regulator TERM 4464 3998333 - 3998303 - T 93 -13.5 -3.2218 | gap 1, opp_overlap 3998303 3998306, overlap 3998306 GTTAATAGTTAGTAA CAAGCCGCATA-CA CAGA TGATATGCGGCTTG TTATGGTGCAAGTAG TERM 4465 3998303 - 3998333 + T 95 -13.5 -3.41051 | gap 1, opp_overlap 3998303 3998306, overlap 3998306 GTTAATAGTTAGTAA CAAGCCGCATA-CA CAGA TGATATGCGGCTTG TTATGGTGCAAGTAG TERM 4466 3998330 - 3998306 - T 79 -9.4 -3.74762 | gap 1, opp_overlap 3998303 3998306, overlap 3998303 AATAGTTAGTAACAA GCCGCATA-CA CAGA TGATATGCGGC TTGTTATGGTGCAAG TERM 4467 3998306 - 3998330 + T 83 -9.4 -3.84406 | gap 1, opp_overlap 3998306 3998303, overlap 3998303 AATAGTTAGTAACAA GCCGCATA-CA CAGA TGATATGCGGC TTGTTATGGTGCAAG Shal_3279 3998960 - 3998367 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Shal_3280 3999681 - 3998947 - | DSBA oxidoreductase TERM 4468 3999718 - 3999736 + r 80 -11 -3.33798 | overlap 3999717 3999713 TTAGATTATCTCGTG GCGCTGCT AAT AGTAGCGC TCTATTTATAACGGT Shal_3281 4001861 - 3999804 - | cytochrome c biogenesis protein transmembrane region Shal_3282 4002391 - 4002041 - | hypothetical protein Shal_3283 4002900 - 4003802 + | LysR family transcriptional regulator TERM 4469 4003844 - 4003860 + T 93 -12.3 -4.05714 | opp_overlap 4003844 GTTGCATACAAAAAA GCCTGCA TAT TGCAGGC TTTATCATTAAAAGT TERM 4470 4003860 - 4003844 - T 100 -12.3 -5.36441 | opp_overlap 4003844 GTTGCATACAAAAAA GCCTGCA TAT TGCAGGC TTTATCATTAAAAGT Shal_3284 4004604 - 4003876 - | putative signal transduction protein Shal_3285 4005464 - 4004853 - | GDSL family lipase TERM 4471 4005503 - 4005521 + r 100 -13.2 -5.05782 | opp_overlap 4005503 TATAACATAAAAAAA GCCAGACA CAA TGTCTGGC TTTTTTGCAATCGCT TERM 4472 4005521 - 4005503 - R 100 -13.2 -5.84432 | opp_overlap 4005503 TATAACATAAAAAAA GCCAGACA CAA TGTCTGGC TTTTTTGCAATCGCT Shal_3286 4007405 - 4005552 - | TonB-dependent receptor plug TERM 4473 4008054 - 4008036 - R 100 -13.2 -5.73978 | opp_overlap 4008036 AGCACAAACAAAAAA GCGAATGC TCG GCATTCGC TTTTCAAGTTTAAAT TERM 4474 4008036 - 4008054 + r 100 -13.2 -4.24404 | opp_overlap 4008036 AGCACAAACAAAAAA GCGAATGC TCG GCATTCGC TTTTCAAGTTTAAAT Shal_3287 4008605 - 4008084 - | NADPH-dependent FMN reductase TERM 4475 4008134 - 4008144 + g 74 -6.8 -4.2349 | opp_overlap 4008133 CCAGCTCTGAATTAC GCAG CTG CTGC TTTTCCATATCGAAA TERM 4476 4008455 - 4008420 - G 79 -10.4 -3.55801 | opp_overlap 4008420 4008425, overlap 4008423 ACCAATTTTGGCAAA GAACTGTTGAGCCAAC TCAG GGTGGCCCAACTGCTC TTCTCTATCTTGGCT TERM 4477 4008452 - 4008423 - G 74 -8.5 -3.91488 | opp_overlap 4008420 4008425, overlap 4008420 AATTTTGGCAAAGAA CTGTTGAGCCAAC TCAG GGTGGCCCAACTG CTCTTCTCTATCTTG Shal_3288 4008833 - 4009744 + | LysR family transcriptional regulator TERM 4478 4010466 - 4010477 + G 73 -4.4 -4.84527 | GCCTAGTTAAAATTC TACC TATC GGTA TTTTTGCTATGTCGG Shal_3289 4009910 - 4012078 + | extracellular solute-binding protein TERM 4479 4012105 - 4012131 + T 100 -10.3 -5.46706 | gap 1, opp_overlap 4012105 AGCCTCCATTAAAAA GCCCTTAAC-CT ATAT AGCGTTAAGGGC TTTTTATTTTAAGCT TERM 4480 4012131 - 4012105 - T 93 -10.3 -4.7254 | gap 1, opp_overlap 4012105 AGCCTCCATTAAAAA GCCCTTAAC-CT ATAT AGCGTTAAGGGC TTTTTATTTTAAGCT Shal_3290 4012868 - 4012152 - | pseudouridine synthase TERM 4481 4012379 - 4012361 - G 70 -8.8 -3.35679 | CTTTTTCAGTGACAA CTTCCAGC TTA GCTGGCAG GGTTAATGCGGGCTC TERM 4482 4013046 - 4013034 - H 82 -7.7 -4.63486 | opp_overlap 4013034 4013032 4013029 ACCGGGCTAAGAAAA GGCTT AAA AAGCC TGTTACTTTGTCGTA Shal_3291 4013080 - 4014117 + | dihydroorotase TERM 4483 4014151 - 4014167 + F 100 -9.4 -6.04324 | opp_overlap 4014151 ATAGTGCTAAATAAA GCCTGC TCATT GCAGGC TTTTTTGTTTTTTCC TERM 4484 4014167 - 4014151 - f 90 -9.4 -4.43208 | opp_overlap 4014151 ATAGTGCTAAATAAA GCCTGC TCATT GCAGGC TTTTTTGTTTTTTCC Shal_3292 4014418 - 4014762 + | hypothetical protein TERM 4485 4014773 - 4014804 + T 91 -13.2 -3.12521 | opp_overlap 4014765, overlap 4014772 4014767 TCTAATACCGTCAGT TTGACGAAAAGGGC ATCG GTCTTTTTCGTCAA TATACTTTTCATCAA Shal_3293 4015603 - 4014824 - | hypothetical protein TERM 4486 4015435 - 4015425 - G 73 -4.6 -4.77567 | AGCTTTAGAATAAAA GCCA AGT CGGC CAAGGAGTCAAAAAT Shal_3294 4015773 - 4016051 + | PpiC-type peptidyl-prolyl cis-trans isomerase TERM 4487 4016485 - 4016517 + T 75 -5.7 -4.67123 | gap 1, overlap 4016478 4016482 4016481 4016489 CTAGGACGCTTCGCT GCGAGGTTCTAGAT CCTAGA ACCTAGAACCT-GC TTTTCCTTCTTTTCC Shal_3295 4017644 - 4016568 - | glucose sorbosone dehydrogenase TERM 4488 4017278 - 4017291 + g 80 -6.7 -4.88067 | opp_overlap 4017269, overlap 4017285 ACAGATCTTGCCAAT CGGTA AGCT TACCG TTTTTGTAAGTCGCT TERM 4489 4017951 - 4017976 + r 100 -11.9 -4.8667 | opp_overlap 4017951 ATCGCCATAAAAAAA CGCCTTACTCC GTTA GGAATAAGGCG TTTTTATGCCGTCTA TERM 4490 4017976 - 4017951 - R 100 -14.1 -5.61596 | opp_overlap 4017951 ATCGCCATAAAAAAA CGCCTTACTCC GTTA GGAATAAGGCG TTTTTATGCCGTCTA Shal_3296 4020005 - 4018011 - | hypothetical protein TERM 4491 4019208 - 4019188 - G 74 -6.8 -4.26076 | opp_overlap 4019187 4019188 TTACGTTTACCAAAA CGGCGCAT AAAGA ATGCGGCG GTTTCTGATATAGCC Shal_3297 4021008 - 4019989 - | glutathione synthetase TERM 4492 4021144 - 4021117 - R 90 -11.4 -3.9751 | AAATAAACAACACAA TGACTCGGGTTA AATG CAACCCAAGTCA GACAATGGCATCTAT Shal_3298 4022494 - 4021430 - | diguanylate cyclase TERM 4493 4022122 - 4022136 + g 83 -4.2 -5.41143 | overlap 4022124 AGATAATTCCCCCAT TAGCCA ACA TGGCCA TTTTTTTAGGGACTA TERM 4494 4022289 - 4022269 - G 91 -11.3 -4.3208 | GCCTATAACCCAAAA TATTGCGAT TTA ATCGCAATA TACCAAAGACTTCGA TERM 4495 4022594 - 4022608 + H 80 -2.1 -5.626 | gap 1, opp_overlap 4022594 CTTTAACGCTAAAAA CG-CAG CCTT CTGGCG TTTTTTTATCCGATA Shal_3299 4022835 - 4024382 + | ferredoxin-dependent glutamate synthase TERM 4496 4024421 - 4024406 - T 70 -5.4 -4.45577 | opp_overlap 4024406 4024405 4024420 ATAAACCCGATAAAA CCACCT TCTG AAGTGG GTGGCTTTCGGCTAA TERM 4497 4024460 - 4024445 - T 75 -2.5 -5.26119 | opp_overlap 4024420 CGGCTAAAAACAAAA GCAGC CCCTTT ACTGC TCAACTCCTCGCATA Shal_3300 4025044 - 4024454 - | HAD family hydrolase TERM 4498 4025049 - 4025035 - G 72 -2.8 -5.08483 | CAAAATCAAACAAAA CAAGCT TCA AGCCTA TCTCCTAAGCTGGCG Shal_3301 4027666 - 4025093 - | protein-P-II uridylyltransferase Shal_3302 4028098 - 4028523 + | hypothetical protein TERM 4499 4028511 - 4028528 + T 70 -8.5 -3.2827 | overlap 4028514 4028516 CAATATTCCCACCGA TGAGCTT AGCT AAGCTCA TTCGTGCTTGGCTAA TERM 4500 4028516 - 4028543 + T 72 -9.2 -3.40775 | overlap 4028511 4028514 TTCCCACCGATGAGC TTAGCTAAGCTC ATTC GTGCTTGGCTAA TATTTGACTAGACAT Shal_3303 4029504 - 4028551 - | hypothetical protein Shal_3304 4031255 - 4029786 - | RNA-metabolising metallo-beta-lactamase TERM 4501 4031443 - 4031420 - R 93 -5.4 -5.60993 | gap 1, opp_overlap 4031420 TTTGCCATAAAAAAA GCAGGAATAAC TTA ATTAT-CCTGC TTATAAAATGGGAGC Shal_3305 4032710 - 4031520 - | hypothetical protein TERM 4502 4032994 - 4032974 - H 77 -8.3 -3.81258 | opp_overlap 4032979 GCAACAACATTCAAA GCTAGTCCA TAG TGGATTAGC TAGACAATAAAATGG TERM 4503 4033028 - 4033007 - H 85 -7.3 -4.84914 | opp_overlap 4033008, overlap 4033008 AGCTAGACAATAAAA TGGAGTGAT AAAC ATCACTCCT TTGACAAAGGCTCGA TERM 4504 4033008 - 4033027 + H 82 -10.8 -3.53444 | opp_overlap 4033007 4033008 GCTAGACAATAAAAT GGAGTGAT AAAC ATCACTCC TTTGACAAAGGCTCG TERM 4505 4033027 - 4033008 - H 82 -10.8 -3.49864 | opp_overlap 4033008, overlap 4033007 GCTAGACAATAAAAT GGAGTGAT AAAC ATCACTCC TTTGACAAAGGCTCG Shal_3306 4033385 - 4033627 + | hypothetical protein TERM 4506 4033741 - 4033756 + F 80 -10.4 -3.67597 | opp_overlap 4033728 4033741 AAGCTTAAACTAAAA GGGAGC CTAA GCTCCC TTATTCACTCACAGA TERM 4507 4033756 - 4033741 - f 91 -10.4 -4.564 | opp_overlap 4033741, overlap 4033728 AAGCTTAAACTAAAA GGGAGC CTAA GCTCCC TTATTCACTCACAGA TERM 4508 4034635 - 4034619 - g 76 -4.4 -4.94992 | gap 1 GCAAACTGAGAAAAA CCTC-GC CGCT GCAGAGG AGCATAAACTTGAAC Shal_3307 4034026 - 4034922 + | band 7 protein Shal_3308 4035571 - 4035002 - | hypothetical protein TERM 4509 4036282 - 4036261 - g 78 -5.9 -4.78237 | TACTGGATAATAAAA TCACTGACA TTGA TATCAGCGA TAATGAAAACCTTGA TERM 4510 4037507 - 4037472 - g 71 -3.4 -4.87786 | gap 1, opp_overlap 4037476 4037484, overlap 4037473 CTAACGCTAGAAAAA CTGGTCACTAAAGGTGA GTA TTACCTTT-GTGAGCAA GATAAGTATCAACAG Shal_3309 4036002 - 4037744 + | hypothetical protein TERM 4511 4037779 - 4037795 + F 100 -10.8 -5.2204 | GCATACCTTTTTCAA GCCCGC CTCGC GCGGGC TTTTTGTTAGTTATA Shal_3310 4038007 - 4040085 + | endothelin-converting protein 1 TERM 4512 4040166 - 4040133 - f 100 -15.5 -3.91042 | opp_overlap 4040138, overlap 4040138 TAGAAATAAGCGAAA CAAAATGCCAGTCAG CCAC CTGACTGGCATTTTT TATTCCGCACTTTTT TERM 4513 4040161 - 4040138 - f 100 -15.4 -4.94962 | opp_overlap 4040138, overlap 4040133 ATAAGCGAAACAAAA TGCCAGTCAG CCAC CTGACTGGCA TTTTTTATTCCGCAC TERM 4514 4040138 - 4040161 + F 100 -15.4 -5.4505 | opp_overlap 4040138 4040133 ATAAGCGAAACAAAA TGCCAGTCAG CCAC CTGACTGGCA TTTTTTATTCCGCAC TERM 4515 4040708 - 4040726 + G 74 -3.8 -5.08824 | overlap 4040710 ATATCTTGCTCTATT TAGCCGAA AAG TTTGGCCA TTTTTTACCTAAAGA Shal_3311 4040338 - 4041195 + | putative glutathione S-transferase YghU TERM 4516 4041243 - 4041217 - T 83 -7.2 -4.67943 | opp_overlap 4041217, overlap 4041212 CTCTAATACAGAAAA GGCGCTTAGTGA CAA TCACCGAGAGCC TTTTTTAATTTAGCC TERM 4517 4041217 - 4041243 + T 93 -7.2 -5.37593 | opp_overlap 4041217 4041212 CTCTAATACAGAAAA GGCGCTTAGTGA CAA TCACCGAGAGCC TTTTTTAATTTAGCC Shal_3312 4041767 - 4041282 - | hypothetical protein TERM 4518 4041944 - 4041922 - R 100 -6.9 -5.55769 | opp_overlap 4041922 TTGCATAATAAAAAA GCCCTAGGC GATTA ACCTTGGGC TTAGTATGATTTTTC Shal_3313 4042263 - 4042015 - | hypothetical protein Shal_3314 4042547 - 4043911 + | guanine deaminase TERM 4519 4043941 - 4043976 + T 100 -17.8 -4.59993 | opp_overlap 4043946, overlap 4043946 AAATCTAGTCATATA AAAAAGGCTCAGAAGG TAAT CCTTCTGAGCCTTTTA TTTGTTTATCACTTT TERM 4520 4043971 - 4043946 - T 100 -17.7 -5.38047 | opp_overlap 4043941 4043946 TAGTCATATAAAAAA GGCTCAGAAGG TAAT CCTTCTGAGCC TTTTATTTGTTTATC TERM 4521 4043946 - 4043971 + T 100 -17.7 -5.22481 | opp_overlap 4043946, overlap 4043941 TAGTCATATAAAAAA GGCTCAGAAGG TAAT CCTTCTGAGCC TTTTATTTGTTTATC Shal_3315 4045405 - 4044020 - | xanthine/uracil/vitamin C permease Shal_3316 4045811 - 4046563 + | SpoOM family protein TERM 4522 4046609 - 4046585 - T 100 -15.9 -4.7923 | opp_overlap 4046585 ATTCAAACAAATAAA TGCCGATAAGT CAT ACTTATCGGCA TTTTATAAACCTACC TERM 4523 4046585 - 4046609 + T 100 -15.9 -4.38712 | opp_overlap 4046585 ATTCAAACAAATAAA TGCCGATAAGT CAT ACTTATCGGCA TTTTATAAACCTACC Shal_3317 4047829 - 4046675 - | mandelate racemase/muconate lactonizing protein Shal_3318 4049432 - 4047834 - | BCCT transporter Shal_3319 4050886 - 4049531 - | FAD dependent oxidoreductase TERM 4524 4051532 - 4051506 - g 73 -10.9 -2.59971 | gap 1, overlap 4051505 4051503 TCCAATAATGAATAT CTGCAACTGGCG ATGG CGCC-GCTGCAG GGACTATCGCGTCGT Shal_3320 4051065 - 4051712 + | GntR family transcriptional regulator TERM 4525 4052262 - 4052248 - T 70 -5.7 -4.36931 | overlap 4052236 TAAGCTAGAGTAAAA CTAGC GTTAA GCTAG AAAGCCAGCATCAAT TERM 4526 4052284 - 4052266 - T 86 -10.3 -3.97368 | opp_overlap 4052266 GCGTTAAGCTAGAAA GCCAGCA TCAAT TGCTGGC TTTTTCTTCATATCG TERM 4527 4052266 - 4052284 + T 93 -10.3 -5.16841 | opp_overlap 4052266 GCGTTAAGCTAGAAA GCCAGCA TCAAT TGCTGGC TTTTTCTTCATATCG Shal_3321 4052886 - 4052347 - | hypothetical protein Shal_3322 4053246 - 4054469 + | sodium/glutamate symporter TERM 4528 4054497 - 4054482 - T 73 -5.4 -4.63932 | TAGCCTCCAATAAAA GCCAAC ATCA GTTAGC CCCATAAAAAAAGCC TERM 4529 4054504 - 4054534 + T 83 -12.7 -2.51888 | opp_overlap 4054510, overlap 4054510 TCAGTTAGCCCCATA AAAAAAGCCAGCG ATTAA CGCTGGCTTTTTA GTCTTAGCTTTAAAA TERM 4530 4054510 - 4054528 + T 100 -11.7 -4.88228 | opp_overlap 4054510, overlap 4054504 AGCCCCATAAAAAAA GCCAGCG ATTAA CGCTGGC TTTTTAGTCTTAGCT TERM 4531 4054528 - 4054510 - T 100 -11.7 -5.61596 | opp_overlap 4054510 4054504 AGCCCCATAAAAAAA GCCAGCG ATTAA CGCTGGC TTTTTAGTCTTAGCT TERM 4532 4056152 - 4056137 - T 73 -5.4 -4.63932 | TAGCCTTTAATAAAA GCCAAC ATCA GTTAGC CCCATAAAAAAAGCC TERM 4533 4056159 - 4056189 + T 83 -12.7 -2.79117 | opp_overlap 4056165, overlap 4056165 TCAGTTAGCCCCATA AAAAAAGCCAGCG ATTAA CGCTGGCTTTTTA GTCTTTGCTTTATAA TERM 4534 4056165 - 4056183 + T 100 -11.7 -4.946 | opp_overlap 4056165, overlap 4056159 AGCCCCATAAAAAAA GCCAGCG ATTAA CGCTGGC TTTTTAGTCTTTGCT TERM 4535 4056183 - 4056165 - T 100 -11.7 -5.61596 | opp_overlap 4056165 4056159 AGCCCCATAAAAAAA GCCAGCG ATTAA CGCTGGC TTTTTAGTCTTTGCT Shal_3324 4057305 - 4056376 - | hypothetical protein TERM 4536 4057434 - 4057407 - H 100 -12.2 -5.26119 | opp_overlap 4057409 GCGCTAAAAACAAAA TAGCAATCCCAT CTAC ATAGGATTGCTA TTAAAAGTTTAATGA Shal_3325 4057655 - 4060528 + | hypothetical protein TERM 4537 4060592 - 4060571 - T 100 -14.5 -5.79595 | opp_overlap 4060571 TCTCAAAACAAAAAA GCGAACCCT AATT AGGGTTCGC TTTTTTGTGCGAACA TERM 4538 4060571 - 4060592 + T 100 -14.5 -5.24129 | opp_overlap 4060571 TCTCAAAACAAAAAA GCGAACCCT AATT AGGGTTCGC TTTTTTGTGCGAACA Shal_3326 4062843 - 4060657 - | hypothetical protein Shal_3327 4063336 - 4063106 - | hypothetical protein TERM 4539 4063215 - 4063239 + g 80 -9.9 -3.9377 | opp_overlap 4063214 4063213 4063210 GCGCTAATGATAATC CCGCTGACGCC CAT GGCTTCAACGG TTTCATTAAAATTGT Shal_3328 4065355 - 4063739 - | carbohydrate kinase FGGY Shal_3329 4066989 - 4065352 - | FAD dependent oxidoreductase Shal_3330 4068629 - 4066986 - | alkylglycerone-phosphate synthase TERM 4540 4067137 - 4067122 - G 72 -8.2 -3.65812 | TCTGTTGCAAGATAA GCGGCA TGAT CGCCGC CCACGCCATGTTGAT TERM 4541 4067535 - 4067547 + g 70 -9.1 -3.41013 | opp_overlap 4067535 4067534, overlap 4067537 4067541 4067544 GAACTGGTTGATAAT GCGCT TCA AGCGC TTGTAGCTCTGGTTG TERM 4542 4067943 - 4067910 - G 78 -12.5 -2.62184 | gap 1, overlap 4067919 CGGCCCCGCAGATGA CGCAGGCAAGGTCGGA ATA TCC-ACCTTGCCCTCG AAGGTCTCAATCTCA TERM 4543 4069783 - 4069764 - g 80 -6.4 -4.82901 | overlap 4069765 CCGCGCCTACAAAAA CTGGAGCG GTCA CACTCCAA GACGCAAGCAATAAC Shal_3331 4068751 - 4069797 + | AraC family transcriptional regulator Shal_3332 4071122 - 4069926 - | ankyrin TERM 4544 4070545 - 4070571 + g 71 -9.6 -3.26531 | overlap 4070543 TCGTCGAAGCCATCT TGATCAAAACGA TCA TCGTTTTCATCA TCTTCGTCTTCGTCA Shal_3333 4071730 - 4071329 - | hypothetical protein TERM 4545 4071884 - 4071853 - R 73 -10.4 -2.75294 | opp_overlap 4071857, overlap 4071852 4071857 GGAAAGCGCCGAAAG TAAACCATCTACCT TGTG AAATAGATGGTTTA GCCTGACAATAGAAA TERM 4546 4071880 - 4071857 - R 71 -6.8 -4.06055 | opp_overlap 4071857, overlap 4071853 4071852 AGCGCCGAAAGTAAA CCATCTACCT TGTG AAATAGATGG TTTAGCCTGACAATA TERM 4547 4071921 - 4071894 - R 80 -10.6 -3.31144 | opp_overlap 4071896 4071899 4071901, overlap 4071896 4071901 GGTTTAGCCTGACAA TAGAAAAGGCCC ATAG GGGCCTCTTCTT GAGTTAACTTATCGG TERM 4548 4071919 - 4071896 - R 91 -13.2 -3.22475 | opp_overlap 4071896 4071899 4071901, overlap 4071894 4071901 TTTAGCCTGACAATA GAAAAGGCCC ATAG GGGCCTCTTC TTGAGTTAACTTATC TERM 4549 4071896 - 4071919 + r 79 -11 -3.21705 | opp_overlap 4071896 4071894 4071901, overlap 4071899 4071901 TTTAGCCTGACAATA GAAAAGGCCC ATAG GGGCCTCTTC TTGAGTTAACTTATC TERM 4550 4071901 - 4071914 + r 77 -9.5 -3.44686 | opp_overlap 4071896 4071894 4071901, overlap 4071899 4071896 CCTGACAATAGAAAA GGCCC ATAG GGGCC TCTTCTTGAGTTAAC TERM 4551 4071914 - 4071901 - R 93 -9.5 -4.73682 | opp_overlap 4071901 4071899 4071896, overlap 4071896 4071894 CCTGACAATAGAAAA GGCCC ATAG GGGCC TCTTCTTGAGTTAAC TERM 4552 4071935 - 4071957 + r 70 -7.8 -3.63627 | TTGAGTTAACTTATC GGATTAACTT ATC AAGTTAAGCC TTTGAAATATCGCCA Shal_3334 4073564 - 4071981 - | Na+/H+ antiporter NhaC TERM 4553 4073962 - 4073949 - R 93 -9.5 -5.0925 | opp_overlap 4073949 GGCTAAAAGTAAAAA GGCCC CGAA GGGCC TTGGATGTGCGTCAA TERM 4554 4073949 - 4073962 + r 73 -9.5 -3.1355 | opp_overlap 4073949 GGCTAAAAGTAAAAA GGCCC CGAA GGGCC TTGGATGTGCGTCAA Shal_3335 4076070 - 4074103 - | hypothetical protein Shal_3336 4076925 - 4077113 + | hypothetical protein Shal_3337 4077635 - 4077844 + | cold-shock DNA-binding domain-containing protein TERM 4555 4077855 - 4077886 + F 93 -13.2 -3.36131 | TGTAACTTCGTAAGT TGACGTAAATGGCT TCTT GGTCATTTACGTCA TTCTAAACTAATTTT Shal_3338 4078208 - 4078417 + | hypothetical protein Shal_3339 4079804 - 4078719 - | hypothetical protein Shal_3340 4080520 - 4080023 - | hypothetical protein Shal_3341 4081795 - 4080605 - | diguanylate cyclase TERM 4556 4082101 - 4082116 + r 74 -6 -4.31815 | opp_overlap 4082101 AATCAGCATAAAAAA GGCCGC CATT GCGACC TTTATCTTATCGTTT TERM 4557 4082116 - 4082101 - R 91 -8.2 -5.33785 | opp_overlap 4082101 AATCAGCATAAAAAA GGCCGC CATT GCGACC TTTATCTTATCGTTT Shal_3342 4083116 - 4082172 - | BAX protein TERM 4558 4083267 - 4083252 - R 100 -8.2 -5.82036 | opp_overlap 4083247 4083252 ACAACAAATAAAAAA GGCCGC AAAT GCGACC TTTTGTTTACAATAT TERM 4559 4083252 - 4083267 + r 82 -6 -4.89521 | opp_overlap 4083252, overlap 4083247 ACAACAAATAAAAAA GGCCGC AAAT GCGACC TTTTGTTTACAATAT Shal_3343 4084286 - 4083285 - | hypothetical protein TERM 4560 4084183 - 4084169 - G 81 -4.9 -5.23292 | TGATACAAAATAAAA CCGCC ACCAA GGCAG GCCCAAGTAGTGGTA Shal_3344 4085394 - 4084276 - | secretion protein HlyD family protein TERM 4561 4084625 - 4084608 - G 75 -6.3 -4.41348 | CCGGTTTCAAATAAA TGAGAGA GTTC TCCCTCA GCATCGCGGTGATCC Shal_3345 4086103 - 4085855 - | hypothetical protein Shal_3346 4086529 - 4086972 + | cytochrome c family protein TERM 4562 4087003 - 4087021 + T 74 -5.2 -4.82901 | opp_overlap 4086984 4087003 4087005 TCACTTAAAGAGAAA GGGGGC ATAAATC GCCCTC TTTTTATGAGCAGAA TERM 4563 4087172 - 4087156 - T 91 -7.9 -5.26316 | opp_overlap 4087157, overlap 4087157 CGAGCTTATAAAAAA GGCCTGC TAT GCAGGCT TTTTTGTCGATGAAC TERM 4564 4087171 - 4087157 - T 88 -11.4 -3.75067 | opp_overlap 4087157, overlap 4087156 GAGCTTATAAAAAAG GCCTGC TAT GCAGGC TTTTTTGTCGATGAA TERM 4565 4087157 - 4087171 + T 100 -11.4 -5.28176 | opp_overlap 4087156 4087157 GAGCTTATAAAAAAG GCCTGC TAT GCAGGC TTTTTTGTCGATGAA Shal_3347 4088734 - 4087628 - | peptidase T-like protein TERM 4566 4088863 - 4088845 - R 83 -11 -3.73224 | opp_overlap 4088845 4088847 TCATCGTTTACTAAA GAGGAGCC TGC GACTCCTC TGTTAGAAACTGAAG Shal_3348 4089610 - 4088948 - | hypothetical protein Shal_3349 4091259 - 4089607 - | hypothetical protein Shal_3350 4092470 - 4091265 - | PqiA family integral membrane protein TERM 4567 4092653 - 4092670 + H 70 -5.5 -4.34737 | opp_overlap 4092650, overlap 4092654 TCAAATAGATGATTC AGAGCTG AAGG CAGCTCA TTTATTCATTGCTAC TERM 4568 4092654 - 4092669 + H 70 -9 -3.20119 | opp_overlap 4092650, overlap 4092653 CAAATAGATGATTCA GAGCTG AAGG CAGCTC ATTTATTCATTGCTA Shal_3351 4092770 - 4093201 + | CMP/dCMP deaminase zinc-binding TERM 4569 4093204 - 4093244 + F 72 -9.1 -3.3858 | opp_overlap 4093209, overlap 4093205 GATGCAGCCCTAATA TGAAAGCAGAGTAAGCT TAGATAT AGCTTACTCTGCTGCCG TTATAACATTGATTT TERM 4570 4093205 - 4093243 + F 72 -10.4 -2.62425 | opp_overlap 4093209, overlap 4093204 ATGCAGCCCTAATAT GAAAGCAGAGTAAGCT TAGATAT AGCTTACTCTGCTGCC GTTATAACATTGATT TERM 4571 4093239 - 4093209 - f 100 -14.2 -3.92592 | opp_overlap 4093205 4093204 AGCCCTAATATGAAA GCAGAGTAAGCT TAGATAT AGCTTACTCTGC TGCCGTTATAACATT Shal_3352 4093519 - 4093872 + | cation diffusion facilitator family transporter Shal_3353 4094858 - 4094097 - | hypothetical protein TERM 4572 4094564 - 4094546 - G 71 -3.8 -4.75219 | overlap 4094548 TAATCACTAATAAAA TAGGCTTA AAC CAAGCCTC TGACACATGGTCAAG TERM 4573 4094798 - 4094778 - G 72 -8.9 -3.63694 | opp_overlap 4094764 4094784, overlap 4094764 AGGCAGTTGCAACAA GCCACCGCC ACC GACCGTGGC TTGTGCGACACCACT Shal_3354 4095066 - 4095542 + | 17 kDa surface antigen TERM 4574 4096092 - 4096076 - f 75 -5.9 -4.69559 | overlap 4096084 AAAGCTTAAAACAAA CTTAAGA ATA TCCTAAG ATAAGCTTAACTTAA Shal_3355 4096541 - 4096972 + | hypothetical protein Shal_3356 4097060 - 4097593 + | cation antiporter Shal_3357 4097593 - 4097889 + | multiple resistance and pH regulation protein F TERM 4575 4097924 - 4097936 + G 71 -3.4 -4.83246 | TAGTGGATTGTGCTT GCTA GTCGG TAGC TTTCTTTGTTTATCC TERM 4576 4098006 - 4098020 + G 70 -10 -3.09834 | CGCATGCACGCGGTA GGTGTC ACC GACACC TTAGGTGCTGGGATG Shal_3358 4097886 - 4098227 + | monovalent cation/proton antiporter, MnhG/PhaG subunit Shal_3359 4098305 - 4099219 + | putative monovalent cation/H+ antiporter subunit B TERM 4577 4099258 - 4099271 + G 72 -3.1 -5.05079 | TGGATCGTGGTATTG CTGAT GATG ATCGG TTTTTATATCGTTAT Shal_3360 4099219 - 4099587 + | NADH-ubiquinone oxidoreductase chain 4L TERM 4578 4099960 - 4099972 + G 70 -9.1 -3.34075 | overlap 4099959 4099966 GGATGTTCGGCATCG TCGCC ACA GGCGA TCTGTTTAATGTATT Shal_3361 4099581 - 4101059 + | putative monovalent cation/H+ antiporter subunit D Shal_3362 4101056 - 4102546 + | NADH dehydrogenase (quinone) Shal_3363 4102536 - 4102970 + | hypothetical protein Shal_3364 4102957 - 4104657 + | putative monovalent cation/H+ antiporter subunit D TERM 4579 4104713 - 4104740 + F 100 -18.6 -5.09895 | opp_overlap 4104713 AAGCAGTGAATTCAA GCGGCTTGCATA GTGA TATGCAAGCCGC TTTTTTAGGTGACTC TERM 4580 4104740 - 4104713 - f 100 -18.6 -3.19936 | opp_overlap 4104713 AAGCAGTGAATTCAA GCGGCTTGCATA GTGA TATGCAAGCCGC TTTTTTAGGTGACTC Shal_3365 4105001 - 4105561 + | hypothetical protein Shal_3366 4105732 - 4106091 + | hypothetical protein TERM 4581 4106266 - 4106293 + F 100 -12.8 -5.37043 | AGATGAGTTTTTCGA GCGGCTTACATA GTGA TATGCAAGCCGC TTTTTTATATCCACT Shal_3367 4106539 - 4107993 + | methyl-accepting chemotaxis sensory transducer TERM 4582 4107993 - 4108027 + F 100 -13.6 -3.84246 | opp_overlap 4107990 4108001, overlap 4108000 4108001 AGAGCGGTATAACTA GGGTAATACGGGTCAG AAT CTGACCCGATTTATCC TTTAATAATTAACGA TERM 4583 4108000 - 4108020 + F 90 -11.1 -4.15841 | opp_overlap 4107990 4108001, overlap 4107993 4108001 TATAACTAGGGTAAT ACGGGTCAG AAT CTGACCCGA TTTATCCTTTAATAA TERM 4584 4108019 - 4108001 - f 100 -14.6 -3.08283 | opp_overlap 4108000 4107993 4108001, overlap 4107990 ATAACTAGGGTAATA CGGGTCAG AAT CTGACCCG ATTTATCCTTTAATA TERM 4585 4108001 - 4108019 + F 100 -14.6 -3.08782 | opp_overlap 4108001 4107990, overlap 4108000 4107993 ATAACTAGGGTAATA CGGGTCAG AAT CTGACCCG ATTTATCCTTTAATA TERM 4586 4108546 - 4108560 + G 77 -3.5 -5.24129 | AGGTTACTGAAAATG GCGGA CAAAC TCTGC TTTTTTCTGGCGGAG Shal_3368 4108305 - 4110023 + | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor TERM 4587 4110051 - 4110081 + T 89 -7 -5.31456 | gap 1, opp_overlap 4110051 GAGTTCGAACCTAAA GCCATCACTTATC CCTATT GG-AAGTGATGGC TTTTTTATGACTTAA Shal_3369 4111017 - 4110175 - | ABC transporter, periplasmic substrate-binding protein, putative TERM 4588 4111807 - 4111848 + H 70 -5.8 -4.33808 | overlap 4111808 4111811 TAAGACATATATGGA CGCTCCCGGTTAGCCAAG GCAGTA CTTTGCTAACCGAGGCTG TTTTGCCTTAGTTTC TERM 4589 4111808 - 4111846 + H 70 -8.2 -3.75653 | gap 1, overlap 4111807 4111811 AAGACATATATGGAC GCTCCCGGTTAGCCAAG GCAGTA CTTTGCTAACCGAG-GC TGTTTTGCCTTAGTT TERM 4590 4111811 - 4111845 + H 71 -9.4 -2.84307 | gap 1, overlap 4111808 4111807 ACATATATGGACGCT CC-CGGTTAGCCAAG GCAGTA CTTTGCTAACCGAGG CTGTTTTGCCTTAGT Shal_3370 4112198 - 4112542 + | hypothetical protein TERM 4591 4113369 - 4113379 + G 74 -8.2 -3.96705 | opp_overlap 4113368 ATCTTGCGACTCAAT CGGG AAT CCCG TTTCACTTTTGTGAC Shal_3371 4112600 - 4113652 + | hypothetical protein Shal_3372 4114113 - 4113682 - | hypothetical protein TERM 4592 4114194 - 4114209 + r 89 -10.4 -4.15543 | opp_overlap 4114194, overlap 4114208 CCCATCAATAAAAAA GCGACC AAAA GGTCGC TTTTAAAGCTCTTTA TERM 4593 4114209 - 4114194 - R 100 -10.4 -5.5112 | opp_overlap 4114194 4114208 CCCATCAATAAAAAA GCGACC AAAA GGTCGC TTTTAAAGCTCTTTA TERM 4594 4114346 - 4114290 - R 100 -15.4 -3.57171 | gap 1, opp_overlap 4114281, overlap 4114281 AGATAAGACAATGAA GTTTGTCGTTTTCGCCGCGGAGTTGAC TCCA GTCAA-TGAGCAGCGAAAACGTCAAAC TGAGGCAGTATTATC Shal_3373 4117277 - 4114377 - | glycine dehydrogenase TERM 4595 4117444 - 4117404 - R 82 -10.6 -3.56558 | gap 1, opp_overlap 4117412 4117442, overlap 4117408 4117412 GCATAAGCCATATAA CGAACAAAGCCCCAA-TCA GCGA TGAGTTGGGGCTTTGTGAG TCATCGACGCTTATT TERM 4596 4117440 - 4117408 - R 100 -14.4 -3.50734 | gap 1, opp_overlap 4117412, overlap 4117404 4117412 AAGCCATATAACGAA CAAAGCCCCAA-TCA GCGA TGAGTTGGGGCTTTG TGAGTCATCGACGCT TERM 4597 4117436 - 4117412 - R 90 -9.4 -4.38203 | gap 1, opp_overlap 4117412, overlap 4117408 4117404 CATATAACGAACAAA GCCCCAA-TCA GCGA TGAGTTGGGGC TTTGTGAGTCATCGA TERM 4598 4117412 - 4117436 + r 83 -9.4 -3.93695 | gap 1, opp_overlap 4117412 4117408 4117404 CATATAACGAACAAA GCCCCAA-TCA GCGA TGAGTTGGGGC TTTGTGAGTCATCGA Shal_3374 4117844 - 4117455 - | glycine cleavage system protein H Shal_3375 4119361 - 4118267 - | glycine cleavage system aminomethyltransferase T Shal_3376 4120900 - 4119680 - | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase Shal_3377 4122349 - 4120997 - | 2-polyprenyl-6-methoxyphenol 4-hydroxylase TERM 4599 4121251 - 4121274 + g 77 -10.4 -3.32832 | opp_overlap 4121263, overlap 4121253 4121255 CTGGGTTAGTACATT CTGAGTTAGC AAGC GCTAACTTAG TTAACTCTTTTTCAA TERM 4600 4121783 - 4121809 + g 86 -13 -3.36878 | CAATTTAGCTGCGAT CTGCTGGCCATC TTC GAGGGTCAGCAG TTGTGAGTCCATGCG TERM 4601 4122429 - 4122402 - R 90 -8.4 -4.96848 | opp_overlap 4122402 TTGCTGATACAAAAA CCGCCATGGCAA ATAA CTGCGATGACGG TATTGGGTACGAGTT Shal_3378 4123020 - 4122445 - | yecA family protein TERM 4602 4123166 - 4123150 - H 73 -9.5 -3.15699 | opp_overlap 4123150, overlap 4123148 AGCTATCGACCAATA GTCAGAT AGG ATCTGAC TCATTCACAACACAT TERM 4603 4123150 - 4123166 + H 70 -9.5 -2.71011 | opp_overlap 4123148 4123150 AGCTATCGACCAATA GTCAGAT AGG ATCTGAC TCATTCACAACACAT TERM 4604 4123729 - 4123713 - g 70 -10.1 -3.0976 | GTCAACACTTGAAGA CGCACTC GTA GAGCGCG CTACAAAACCTGACG Shal_3379 4123438 - 4123758 + | hypothetical protein TERM 4605 4124038 - 4124057 + F 100 -10 -5.4251 | opp_overlap 4124038 TTCAATTTACAGTAA GCCATCTC ACTT GAGGTGGC TTTTTTGTATGTGCA Shal_3380 4124392 - 4125852 + | glycerophosphoryl diester phosphodiesterase TERM 4606 4125969 - 4125952 - g 91 -6.9 -5.51165 | AAAAGTGCAAAAAAA GCAGCAG TCGG CAGCTGC CAAACAACAAAAGCA TERM 4607 4126771 - 4126760 - g 82 -7.2 -4.8269 | GAGAAGTATCAAAAA GGCG TTAC CGCC TATGAAGCTAGAGTT TERM 4608 4128065 - 4128041 - g 70 -10.1 -3.09834 | overlap 4128049 CACGCTATTAGTGAA CCATTAAACCG TTT CGATTTAACGG TGCTGCCAGAGCATG Shal_3381 4125845 - 4128319 + | hypothetical protein TERM 4609 4128521 - 4128484 - g 74 -8.3 -3.96148 | overlap 4128507 GTTGGCGAGTAGAAA TTGGCGTAAGCCGCCAT AAAC ACGGTGGCCAACGCCCA TCAGGTATTGCCAGT Shal_3382 4128345 - 4130237 + | hypothetical protein TERM 4610 4130321 - 4130273 - T 100 -12.8 -4.50583 | opp_overlap 4130278 AACACGATGAGAAAA GCAAAGACGAT-AGAGCCGAGTAA AGC TTAA-CAGCTCTTATCGTCTTTGC TTGCACCGCCTCAGC TERM 4611 4130671 - 4130657 - T 70 -2.8 -5.15969 | GCCCAATCTAAAAAA GTAAAG TTA CTTTTC CGTCTCTACTTATAA Shal_3383 4131073 - 4130744 - | hypothetical protein Shal_3384 4131422 - 4131685 + | hypothetical protein Shal_3385 4131919 - 4132641 + | CRP/FNR family transcriptional regulator Shal_3386 4132831 - 4133460 + | 5-formyltetrahydrofolate cyclo-ligase Shal_3387 4133666 - 4134289 + | hypothetical protein Shal_3388 4134337 - 4135074 + | hypothetical protein TERM 4612 4135217 - 4135188 - T 89 -11.7 -3.60627 | gap 1, opp_overlap 4135195, overlap 4135195 TTATCTGAGCTTAAA TA-AAAAAGAGCGC AAG GCGCTCTTTTTATA TGAATATGCTCCAGG TERM 4613 4135195 - 4135209 + T 95 -11.4 -4.99638 | opp_overlap 4135188 4135195 AGCTTAAATAAAAAA GAGCGC AAG GCGCTC TTTTTATATGAATAT TERM 4614 4135209 - 4135195 - T 100 -11.4 -5.64421 | opp_overlap 4135195, overlap 4135188 AGCTTAAATAAAAAA GAGCGC AAG GCGCTC TTTTTATATGAATAT Shal_3389 4135942 - 4135274 - | uracil-DNA glycosylase Shal_3390 4136199 - 4136750 + | pilin, putative Shal_3391 4136809 - 4137342 + | methylation site containing protein Shal_3392 4137417 - 4137710 + | hypothetical protein TERM 4615 4137787 - 4137768 - T 91 -12.2 -3.90761 | opp_overlap 4137768 TAATGGATATAAGAA CGCCATCT GTTT AGATGGCG TTTTTTTATGGGTAA TERM 4616 4137768 - 4137787 + T 100 -12.2 -5.64274 | opp_overlap 4137768 TAATGGATATAAGAA CGCCATCT GTTT AGATGGCG TTTTTTTATGGGTAA Shal_3393 4138441 - 4137827 - | lysine exporter protein LysE/YggA TERM 4617 4138635 - 4138618 - H 70 -9.9 -2.53271 | opp_overlap 4138618, overlap 4138617 4138615 4138627 GTAGCTTTATAATAG CTCGCAA CAGT TTGCGAG TTGCATACCGACATA TERM 4618 4138618 - 4138635 + H 72 -9.9 -3.05596 | opp_overlap 4138618 4138617 4138615 4138627 GTAGCTTTATAATAG CTCGCAA CAGT TTGCGAG TTGCATACCGACATA Shal_3394 4138696 - 4139238 + | thiol:disulfide interchange protein, putative Shal_3395 4139637 - 4141235 + | AMP-dependent synthetase and ligase TERM 4619 4141277 - 4141247 - T 70 -9.1 -3.17723 | overlap 4141250 GTAGCTCCAAGGTAA GAATTTAGCCGTT CCACT ACCGGCTAAACTC AATGACTAAAAGGTA TERM 4620 4141278 - 4141311 + T 79 -10.5 -3.55946 | opp_overlap 4141280, overlap 4141277 4141280 4141289 CTACCGGCTAAACTC AATGACTAAAAGGTA AGCC TGCCTTTTAGTCATG TCTTATTTGCGCTAA TERM 4621 4141280 - 4141309 + T 93 -13.1 -3.35054 | opp_overlap 4141280, overlap 4141278 4141277 4141289 ACCGGCTAAACTCAA TGACTAAAAGGTA AGCC TGCCTTTTAGTCA TGTCTTATTTGCGCT TERM 4622 4141309 - 4141280 - T 80 -10.9 -3.27704 | opp_overlap 4141280 4141278 4141277 4141289 ACCGGCTAAACTCAA TGACTAAAAGGTA AGCC TGCCTTTTAGTCA TGTCTTATTTGCGCT Shal_3396 4143462 - 4141390 - | lipid ABC transporter ATPase/inner membrane protein TERM 4623 4143459 - 4143444 - G 88 -7.5 -4.9645 | AGCAGAATAACAAAA CCCGC GCAAAG GCGGG CAATGTTTATTGAAC Shal_3397 4144064 - 4143516 - | pyridoxamine 5'-phosphate oxidase-related FMN-binding TERM 4624 4144100 - 4144138 + r 76 -3.2 -5.28942 | overlap 4144100 4144106 ATATTTATTCTAGTG GCTCTTACTTAGCTAAGG GCT CTTTACTTAGCTAAGGGC TTTTTATTTAGACTG Shal_3398 4144735 - 4144211 - | hypothetical protein Shal_3399 4146927 - 4144861 - | TonB-dependent heme/hemoglobin receptor family protein TERM 4625 4147366 - 4147334 - g 72 -9.1 -3.63744 | overlap 4147332 TCGCCTCGCAAAATA CTGAGCCTGAACTGA TGT TAAGTGCAGGCTCCG CTATGGGCTCCAATC TERM 4626 4147752 - 4147741 - g 74 -3.6 -5.06451 | opp_overlap 4147741, overlap 4147742 4147744 4147745 CATTACCCCAAAAAA GCAC GCAA GCGC GGCTTTCAAGGGACT Shal_3400 4147258 - 4147956 + | TonB family protein Shal_3401 4148044 - 4148820 + | MotA/TolQ/ExbB proton channel Shal_3402 4148817 - 4149230 + | biopolymer transport protein ExbD/TolR TERM 4627 4149964 - 4149985 + G 75 -6.5 -4.37527 | overlap 4149966 TCATAATTAAACTTG CAGGCGGTA AGAA TATCGCCGG TTTTAGTGGTTATAA Shal_3403 4149336 - 4150253 + | periplasmic binding protein TERM 4628 4150617 - 4150641 + G 70 -9.9 -2.98729 | overlap 4150619 4150632 TATCGGAGTGTCATC GGGTGCGGCGC TTG GCGCTGCAATC TGTATCGTACTTATC Shal_3404 4150312 - 4151328 + | transport system permease protein Shal_3405 4151331 - 4152143 + | hemin importer ATP-binding subunit TERM 4629 4152157 - 4152177 + T 83 -7.5 -4.7173 | AAAACTAATATCGAA GTGAGTGCC ATT GGTGCTCGC TTTTTCAATCTAATA Shal_3406 4152784 - 4152203 - | TetR family transcriptional regulator TERM 4630 4152810 - 4152828 + H 72 -9 -3.37912 | opp_overlap 4152808, overlap 4152809 CGTTAAAATCACACT TATTCTAC AGT GTAGAATA TATTATCTGTAAGTG Shal_3407 4152900 - 4153454 + | deaminase-reductase domain-containing protein TERM 4631 4153958 - 4153948 - g 71 -6.8 -4.07687 | AGTGTCTGCCGAAAA GCTG CAG CAGC TTGAAGCCCATGAAC Shal_3408 4153523 - 4154023 + | hypothetical protein Shal_3409 4154970 - 4154059 - | LysR family transcriptional regulator TERM 4632 4154347 - 4154358 + g 83 -4.4 -5.27938 | GCTAATGGCGTAACT GAAC CAAA GTTC TTTTTGTTTCGCACT TERM 4633 4155184 - 4155194 + G 80 -6.8 -4.66264 | opp_overlap 4155183 CACATTTTCAATTAT TGGC TTA GCCA TTTTTACCGATTTTG Shal_3410 4155116 - 4155541 + | transmembrane pair domain-containing protein TERM 4634 4155616 - 4155635 + F 74 -9.3 -3.48395 | opp_overlap 4155616 4155618, overlap 4155604 TCCGATAGCCATATA GAGCGGA GTTACA TCCGCTC TTATATGGCGACACT Shal_3411 4155785 - 4157197 + | coproporphyrinogen III oxidase Shal_3412 4157278 - 4157652 + | hypothetical protein TERM 4635 4157713 - 4157690 - f 73 -10.4 -2.90496 | opp_overlap 4157688 4157690, overlap 4157687 TCGCCTCTTAAAGCA GCACTAATGA TTAG CCATTAGTGC TATTCCTTTCGACTT TERM 4636 4157690 - 4157713 + F 75 -9.7 -3.34267 | opp_overlap 4157690 4157687, overlap 4157688 TCGCCTCTTAAAGCA GCACTAATG ATTAGC CATTAGTGC TATTCCTTTCGACTT Shal_3413 4157926 - 4158096 + | periplasmic nitrate reductase NapE TERM 4637 4158514 - 4158500 - g 73 -4.2 -4.7871 | AAGTATGATGAAAAA CGCC TAGAGAT GGCG AGCCGAGAGTGGAAG TERM 4638 4159174 - 4159141 - g 72 -9 -3.58726 | gap 1, opp_overlap 4159124 4159141 TCGTGGTACATATAA CACTAGCTGTAGTGT TTGTC ACACT-CAGCCAGCG CCAGCACATTTCGAT Shal_3414 4158137 - 4159315 + | trimethylamine-N-oxide reductase c-type cytochrome TorC TERM 4639 4160350 - 4160330 - g 71 -3.9 -4.73388 | opp_overlap 4160330 AATGGGCATCAAAAA TCTGTGGTG TTT CACCTGAGA TTATCCGTGATCTTG Shal_3415 4159330 - 4161828 + | trimethylamine-N-oxide reductase TorA TERM 4640 4162239 - 4162205 - g 79 -12.2 -2.85545 | overlap 4162202 4162200 4162210 4162236 TGGTGAACAACATCA GCAGATGACCCAGTTT TTA AAACAGAGTCAACTGC AGGTACAGAGTGAGT TERM 4641 4162347 - 4162319 - g 93 -14.7 -3.35679 | opp_overlap 4162326, overlap 4162322 4162339 TCTTTGTATCCATAA CAATGATGCTGAG CAA CTCAGCTTCATTG AAGCAAACTTAGCTA TERM 4642 4162344 - 4162322 - g 83 -10.6 -3.8211 | opp_overlap 4162326, overlap 4162319 4162339 TTGTATCCATAACAA TGATGCTGAG CAA CTCAGCTTCA TTGAAGCAAACTTAG TERM 4643 4162326 - 4162340 + G 73 -10 -3.33696 | opp_overlap 4162322 4162319 4162339 ATCCATAACAATGAT GCTGAG CAA CTCAGC TTCATTGAAGCAAAC Shal_3416 4161825 - 4162490 + | chaperone protein TorD TERM 4644 4162515 - 4162543 + T 100 -16.1 -5.43414 | opp_overlap 4162515 TACTCGTTTAAAAAA GCGTGAGTGAACT TTA AGTTCTCTCACGC TTTTTTATGTCTGCT TERM 4645 4162543 - 4162515 - T 100 -16.1 -5.0133 | opp_overlap 4162515 TACTCGTTTAAAAAA GCGTGAGTGAACT TTA AGTTCTCTCACGC TTTTTTATGTCTGCT Shal_3417 4165750 - 4162586 - | Hpt sensor hybrid histidine kinase TERM 4646 4163080 - 4163102 + g 95 -13.4 -3.74747 | overlap 4163081 TTTCGAGATCTTGTA GTGGCTCGGC GTT GCCGAGCCAG TTTGATAAGGCTTGC TERM 4647 4163081 - 4163101 + g 100 -16.9 -2.84527 | overlap 4163080 TTCGAGATCTTGTAG TGGCTCGGC GTT GCCGAGCCA GTTTGATAAGGCTTG TERM 4648 4165788 - 4165820 + H 70 -8.8 -3.34227 | gap 1, opp_overlap 4165788 4165785 4165783, overlap 4165774 GCTGGTATAATATTA TACCAATTGAATTAA ATAT TTAAT-CAATTGGTA TTAATCGTTTACTCA Shal_3418 4165859 - 4166923 + | periplasmic sensory protein associated with the TorRS two-component regulatory system Shal_3419 4167706 - 4166996 - | DNA-binding transcriptional regulator TorR TERM 4649 4167845 - 4167865 + r 100 -15.5 -4.1196 | opp_overlap 4167845 GCTTGAACTAAAAAA GCCAGCTCA ATT TGAGCTGGC TTTTAAAAATAACTT TERM 4650 4167865 - 4167845 - R 100 -15.5 -5.26875 | opp_overlap 4167845 GCTTGAACTAAAAAA GCCAGCTCA ATT TGAGCTGGC TTTTAAAAATAACTT Shal_3420 4168631 - 4167894 - | hypothetical protein Shal_3421 4169639 - 4168815 - | Ion transport protein Shal_3422 4170105 - 4169809 - | hypothetical protein TERM 4651 4170453 - 4170441 - g 71 -7.7 -3.83998 | TGATGCCAGAGCAAA TGGCT CAT AGCCA AGTAAAGCCTACTAA Shal_3423 4170335 - 4171120 + | membrane-flanked domain-containing protein TERM 4652 4172565 - 4172595 + G 72 -8.2 -3.72324 | ATTTCCATCATTGCG GCGCGAGACATTGC AGA GCGATCACTTGCGC TTATTCATAACGATC Shal_3424 4171110 - 4172627 + | membrane-flanked domain-containing protein Shal_3425 4172630 - 4173208 + | hypothetical protein TERM 4653 4173299 - 4173315 + T 84 -10.1 -3.87318 | TCTGTTGTAAAACGG GCTCCCT AGA AGGGGGC TTTCCTATCGTGCTT Shal_3426 4174078 - 4173635 - | UspA domain-containing protein Shal_3427 4174696 - 4174265 - | UspA domain-containing protein TERM 4654 4174789 - 4174808 + r 72 -10 -2.58539 | opp_overlap 4174781, overlap 4174785 CTTAATACTATGACT CGGCGCTA TGCT TAGCGCTG TGGCTTAATGCTATT Shal_3428 4175217 - 4174837 - | hypothetical protein TERM 4655 4175349 - 4175370 + H 72 -8.7 -3.53224 | opp_overlap 4175345 4175350 4175352, overlap 4175350 4175352 AACTTAATTAATATC AGACCGACT AATC AGTCGGTCA TTTAAAAACCAGCTC TERM 4656 4175369 - 4175350 - H 81 -12.2 -2.80966 | opp_overlap 4175349 4175350 4175352, overlap 4175345 4175352 ACTTAATTAATATCA GACCGACT AATC AGTCGGTC ATTTAAAAACCAGCT TERM 4657 4175350 - 4175369 + H 81 -12.2 -2.71791 | opp_overlap 4175350 4175345 4175352, overlap 4175349 4175352 ACTTAATTAATATCA GACCGACT AATC AGTCGGTC ATTTAAAAACCAGCT Shal_3429 4175399 - 4176826 + | aldehyde dehydrogenase TERM 4658 4176891 - 4176875 - g 72 -5.1 -4.73105 | ATCGATAAAAAACAA GCCATAT TAG ACACGGC GCTAACACTCTTTGT TERM 4659 4176970 - 4176953 - g 72 -6.3 -4.19746 | gap 1 TCTATTGCAAAACAA GCCAG-AG TTG CTACTGGC ACCCTATTTCATCAT Shal_3430 4176851 - 4177423 + | TetR family transcriptional regulator Shal_3431 4179563 - 4178193 - | histidine kinase TERM 4660 4178924 - 4178910 - G 78 -6.4 -4.72272 | TCCGTTCAGCAAAAA CTGTCC ACG AGACAG GTGCCAGGTCTCAAT TERM 4661 4179450 - 4179432 - G 76 -4.5 -5.00616 | opp_overlap 4179432 CTGCGGCTCAAAAAA CGCCTTA GTTAT TACGGCG GTTCTTGCGAGCCAA Shal_3432 4181059 - 4179608 - | two component, sigma54 specific, Fis family transcriptional regulator TERM 4662 4180325 - 4180313 - G 74 -5.5 -4.66609 | TATCTCATCTAAAAA CAGTG TGC CACCG TCGGCCGCTTCGAAT Shal_3433 4182397 - 4181186 - | hypothetical protein Shal_3434 4183725 - 4182424 - | hypothetical protein Shal_3435 4184496 - 4183747 - | ABC transporter related Shal_3436 4184847 - 4184569 - | hypothetical protein Shal_3437 4186129 - 4184867 - | RND family efflux transporter MFP subunit TERM 4663 4185723 - 4185738 + g 72 -6 -4.44548 | opp_overlap 4185723 CGCGCATTGAGACGA GCACGC TCAA GCGAGC TTTTCATTCCCTCTA TERM 4664 4187312 - 4187344 + G 75 -6.1 -4.41348 | ACCTTTGGTGACGGC GGCCTAACCGGTGCG GGT CGTGCCGATTCAGCC TTTGTTTACCGCAAC Shal_3438 4186841 - 4187998 + | porin TERM 4665 4188091 - 4188056 - f 83 -12 -3.17723 | opp_overlap 4188059 4188068, overlap 4188059 4188068 TTAGTGCGAACGCAA CCATCGAGAGAATAGG TTCG CCTATTTTCTCGATTG GTTATACCTATTCTA TERM 4666 4188088 - 4188059 - f 83 -12.3 -2.78712 | opp_overlap 4188059 4188068, overlap 4188056 4188068 GTGCGAACGCAACCA TCGAGAGAATAGG TTCG CCTATTTTCTCGA TTGGTTATACCTATT TERM 4667 4188059 - 4188088 + F 100 -14.5 -3.4706 | opp_overlap 4188059 4188056 4188068, overlap 4188068 GTGCGAACGCAACCA TCGAGAGAATAGG TTCG CCTATTTTCTCGA TTGGTTATACCTATT TERM 4668 4188241 - 4188225 - f 73 -10.1 -2.81966 | opp_overlap 4188222 GCAAACTGGATCATA CCCGTGG TAT CCACGAG TAATCGTTGAAATAG Shal_3439 4188803 - 4190173 + | nitrite transporter TERM 4669 4190194 - 4190212 + F 73 -8.8 -3.64703 | TCAATTTATGTACCG CAGCCAAG ACT CTGGGCTG TTTAGGTACAGGAGG TERM 4670 4191422 - 4191399 - g 77 -8.8 -4.01381 | opp_overlap 4191398, overlap 4191400 AGTTAACTGAAACAA TCGCAGTACC AACA GGTACCGCGG GGTTTCGTTGGAGCG TERM 4671 4191421 - 4191400 - g 80 -12.3 -3.00106 | opp_overlap 4191398, overlap 4191399 GTTAACTGAAACAAT CGCAGTACC AACA GGTACCGCG GGGTTTCGTTGGAGC Shal_3440 4190237 - 4193986 + | nitrate reductase, alpha subunit Shal_3441 4193983 - 4195542 + | nitrate reductase, beta subunit TERM 4672 4195788 - 4195813 + G 74 -10.5 -3.14564 | gap 1 CACTGGGTGACTCAC GT-GACCGTGGC CAA GCCATGGTCGAC TTAATGACCGAGTAC Shal_3442 4195535 - 4196260 + | nitrate reductase molybdenum cofactor assembly chaperone Shal_3443 4196266 - 4196934 + | respiratory nitrate reductase, gamma subunit TERM 4673 4196964 - 4196939 - f 71 -6.1 -4.15044 | opp_overlap 4196941, overlap 4196940 TTGTTCGTTAACAAA TTGGCCACTTA GCAC TAAGTGGCCTT GTTTCCTAAATCGAA TERM 4674 4196963 - 4196940 - f 72 -9.6 -3.08812 | opp_overlap 4196941, overlap 4196939 TGTTCGTTAACAAAT TGGCCACTTA GCAC TAAGTGGCCT TGTTTCCTAAATCGA TERM 4675 4196941 - 4196962 + F 100 -13.1 -4.015 | opp_overlap 4196940 4196939 GTTCGTTAACAAATT GGCCACTTA GCAC TAAGTGGCC TTGTTTCCTAAATCG Shal_3444 4197039 - 4197209 + | hypothetical protein Shal_3445 4197290 - 4197418 + | porin TERM 4676 4197509 - 4197494 - T 85 -7.6 -5.00616 | opp_overlap 4197494 CCGCTCGGCAAAAAA CACTTC CTTG GAAGTG TTTTTTTATTAGTTA TERM 4677 4197494 - 4197509 + T 100 -7.6 -5.87996 | opp_overlap 4197494 CCGCTCGGCAAAAAA CACTTC CTTG GAAGTG TTTTTTTATTAGTTA Shal_3446 4199086 - 4197560 - | Fis family transcriptional regulator TERM 4678 4199922 - 4199960 + H 74 -9.1 -3.59087 | opp_overlap 4199930, overlap 4199923 4199925 4199930 GATATGTCGGGATGA CCACGAAATATCATG ACGGCAAAC CATGATATTTCGTGA TTTCAGGATCCTGTT TERM 4679 4199923 - 4199959 + H 83 -12.6 -2.7497 | opp_overlap 4199930, overlap 4199922 4199925 4199930 ATATGTCGGGATGAC CACGAAATATCATG ACGGCAAAC CATGATATTTCGTG ATTTCAGGATCCTGT TERM 4680 4199925 - 4199957 + H 71 -9.4 -2.91873 | opp_overlap 4199930, overlap 4199923 4199922 4199930 ATGTCGGGATGACCA CGAAATATCATG ACGGCAAAC CATGATATTTCG TGATTTCAGGATCCT TERM 4681 4200124 - 4200111 - g 72 -3.1 -4.91873 | overlap 4200116 TAGATGAACGAAAAA GAACT GGCA AGTCC TAGCCGACGCCAACT Shal_3447 4200099 - 4201658 + | flavocytochrome c Shal_3448 4201725 - 4203374 + | phenylalanine/histidine ammonia-lyase TERM 4682 4203423 - 4203384 - f 70 -9.4 -2.61681 | gap 1, opp_overlap 4203397, overlap 4203383 CTCTAACCCCATAAG GGCTGCAAGAGATGAGC CCCACTT GCTC-TCCCTTGCAGCG ATAGGTACCACTCCC Shal_3449 4203570 - 4203950 + | tetraheme cytochrome c TERM 4683 4203960 - 4203944 - T 70 -8.7 -3.32993 | GTACCCAGATATGAA GCGATAG GTT CTACCGC CGAATAAGGCTAAGA TERM 4684 4204111 - 4204133 + T 82 -11.4 -3.16564 | CGTTTTGATCGATTT TGCCTAGAAT GGC GTTCTAGGCA TTGATGGGCTAAAGC Shal_3450 4204791 - 4204408 - | hypothetical protein TERM 4685 4205110 - 4205084 - R 100 -12.4 -4.84761 | opp_overlap 4205089 4205109, overlap 4205098 ATAGCGCGATAAAAA GCACAGCTAG TATACGT CTAGCTGTGC TAACGCCACGTCAGC Shal_3451 4205691 - 4205134 - | hypothetical protein Shal_3452 4206984 - 4206148 - | periplasmic binding protein TERM 4686 4206955 - 4206929 - G 79 -8.6 -4.20696 | TCAGCAAGCGCAAAA GCCGACGGTAAG GCG CATGCCGTCAGC AACATAAATAATTGG Shal_3453 4208018 - 4207401 - | cob(I)yrinic acid a,c-diamide adenosyltransferase Shal_3454 4209983 - 4208382 - | cobyric acid synthase Shal_3455 4210526 - 4209996 - | cobalbumin biosynthesis protein Shal_3456 4211302 - 4210523 - | cobalamin 5'-phosphate synthase TERM 4687 4210582 - 4210560 - G 72 -8.4 -3.77437 | opp_overlap 4210580, overlap 4210567 AGTAATAATAGATAA CAGCTAAGCT CCG AGCCTTGCTG GGCAGCGCCAAGTGT Shal_3457 4211659 - 4211519 - | hypothetical protein Shal_3458 4212811 - 4211783 - | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase TERM 4688 4211875 - 4211851 - G 72 -9.1 -3.61398 | opp_overlap 4211839 4211852, overlap 4211836 4211852 CCGCTGCTTGAATAA GCGGGAGCGCC AAT GCCGCCCCCGT GCCTTCACCCAGTTT TERM 4689 4211852 - 4211874 + g 70 -10.4 -2.52795 | opp_overlap 4211836 4211851 4211852, overlap 4211839 CGCTGCTTGAATAAG CGGGAGCGCC AAT GCCGCCCCCG TGCCTTCACCCAGTT TERM 4690 4211874 - 4211852 - G 79 -12.6 -2.76696 | opp_overlap 4211852 4211839, overlap 4211836 4211851 CGCTGCTTGAATAAG CGGGAGCGCC AAT GCCGCCCCCG TGCCTTCACCCAGTT TERM 4691 4212733 - 4212744 + g 76 -4.4 -5.01546 | AGTCGCCCAGAGCGC CCAA GGGT TTGG TTTTTGTGTCAATTT Shal_3459 4213934 - 4212879 - | transport system permease protein Shal_3460 4214856 - 4213927 - | ABC transporter related Shal_3461 4216213 - 4215566 - | phosphoglycerate mutase Shal_3462 4216454 - 4220236 + | B12-dependent methionine synthase TERM 4692 4220299 - 4220257 - f 75 -9.9 -3.2785 | gap 1, overlap 4220255 4220258 GATCCAAAATAGACA GCCTTGAGTGAGCGGGCAAA CTTG TTTGTCCGCTCAC-CACGGG AAAAAATCAAAGCAC TERM 4693 4220298 - 4220258 - f 90 -13.4 -2.55987 | gap 1, overlap 4220257 4220255 ATCCAAAATAGACAG CCTTGAGTGAGCGGGCAAA CTTG TTTGTCCGCTCAC-CACGG GAAAAAATCAAAGCA TERM 4694 4220323 - 4220306 - f 70 -2.7 -5.06451 | opp_overlap 4220306 CACCACGGGAAAAAA TCAAAGC ACTC GCTTTTA TTCTCACTTATCGCC Shal_3464 4220872 - 4221789 + | urease accessory protein UreD Shal_3465 4221885 - 4222187 + | urease, gamma subunit Shal_3466 4222214 - 4222531 + | urease, beta subunit Shal_3467 4222534 - 4224237 + | urease subunit alpha TERM 4695 4224480 - 4224496 + G 73 -4.4 -4.90079 | CATCACGGTTCTTTG CTATCG ACTGA CGATGG TTTTGTTGTTGAAGT Shal_3468 4224315 - 4224833 + | UreE urease accessory domain-containing protein Shal_3469 4224837 - 4225520 + | urease accessory protein UreF Shal_3470 4225636 - 4226259 + | urease accessory protein UreG TERM 4696 4226424 - 4226399 - f 79 -5.5 -4.88295 | opp_overlap 4226421, overlap 4226417 4226419 AAATAAAGGGAAAAA CACCAACATTT ATTT AAACATCGGTG ATTATTCAATCTGAT TERM 4697 4226771 - 4226738 - g 71 -6.9 -4.13282 | opp_overlap 4226738 4226733 4226742 ACGATATGGTTAAAA TCAATATCTTCGTTA TGAA TATTGAAGATATTGA TGTAATTGATGAAAT Shal_3471 4226503 - 4227741 + | endoribonuclease L-PSP Shal_3472 4227978 - 4228124 + | hypothetical protein TERM 4698 4228278 - 4228259 - T 95 -12.2 -4.65933 | CAGGCCTAAAATAAA GAGCTTGG TGAC CCAAGCTC TAAAATCAGAAGCTC Shal_3473 4229051 - 4228311 - | hypothetical protein TERM 4699 4228343 - 4228386 + g 77 -10.7 -3.39449 | gap 2, opp_overlap 4228343, overlap 4228345 TACAAGGCTTGATAA TC-GTG-GAGGCTTTATCATT GATT AATGATAAAGCCTCATACTGA TTAATATTCATCGCC TERM 4700 4228345 - 4228383 + g 82 -13.5 -2.85437 | gap 1, opp_overlap 4228343, overlap 4228343 CAAGGCTTGATAATC GTG-GAGGCTTTATCATT GATT AATGATAAAGCCTCATAC TGATTAATATTCATC TERM 4701 4229458 - 4229427 - R 100 -11.7 -5.06414 | opp_overlap 4229427 TCTGTCCAACAAAAA GCCCCAATCATGA GAATTA TTATGATTGGGGC TTTTTTAATCTAGAG TERM 4702 4229427 - 4229458 + r 100 -13.9 -5.21709 | opp_overlap 4229427 TCTGTCCAACAAAAA GCCCCAATCATGA GAATTA TTATGATTGGGGC TTTTTTAATCTAGAG Shal_3474 4230098 - 4229499 - | glutathione-dependent formaldehyde-activating enzyme TERM 4703 4232744 - 4232771 + G 81 -8.5 -4.43477 | opp_overlap 4232744 TTACTTATCTACCAA CAGCTAACGCT TTACGT GGTGTTAGCTG TTTTGCTTACCTACC Shal_3475 4230644 - 4233925 + | MscS mechanosensitive ion channel Shal_3476 4234227 - 4234475 + | hypothetical protein TERM 4704 4235056 - 4235078 + G 73 -9.9 -3.36515 | overlap 4235054 GCAAACAGAGGCAGC GCTTGAACG TGTAT CGTTCGAGC TATTTGAAGATGCCG Shal_3477 4234832 - 4235827 + | adenosine deaminase TERM 4705 4235919 - 4235952 + F 87 -12.7 -3.42366 | opp_overlap 4235919 4235924, overlap 4235924 CCAAACGGTATTACA GAAAAGGCTATTAAC TGAT GTTAATAGCCTTTTA TTATGGGCTTTTGAC TERM 4706 4235952 - 4235919 - f 83 -12.7 -2.81966 | opp_overlap 4235919 4235924, overlap 4235924 CCAAACGGTATTACA GAAAAGGCTATTAAC TGAT GTTAATAGCCTTTTA TTATGGGCTTTTGAC TERM 4707 4235947 - 4235924 - f 100 -12.6 -4.57353 | opp_overlap 4235924 4235919, overlap 4235919 CGGTATTACAGAAAA GGCTATTAAC TGAT GTTAATAGCC TTTTATTATGGGCTT TERM 4708 4235924 - 4235947 + F 100 -12.6 -4.78839 | opp_overlap 4235919 4235924, overlap 4235919 CGGTATTACAGAAAA GGCTATTAAC TGAT GTTAATAGCC TTTTATTATGGGCTT Shal_3478 4236396 - 4236737 + | TM2 domain-containing protein TERM 4709 4236798 - 4236813 + F 95 -9 -5.4505 | opp_overlap 4236798 AAAGATTTAGGAAAA GACAGC TTAG GCTGTC TTTTTTATTGGGCGG TERM 4710 4236813 - 4236798 - f 86 -9 -4.31412 | opp_overlap 4236798 AAAGATTTAGGAAAA GACAGC TTAG GCTGTC TTTTTTATTGGGCGG TERM 4711 4236937 - 4236949 + F 76 -9.1 -3.66666 | GTATAAAGACTTGAC CGCTC AGC GAGCG TTTAGCACTTTTGAG TERM 4712 4239115 - 4239100 - g 70 -9 -3.3785 | overlap 4239083 CCAACGTAGGCATAA CTGCCA CAGC TGGCAG TTCACAGGCTTATAA Shal_3479 4237644 - 4241054 + | TagA-related protein TERM 4713 4241103 - 4241136 + T 73 -6.7 -4.28977 | opp_overlap 4241109, overlap 4241096 ATATAACCCTTATAA TCAAAAGCCAGTTGC TACA GCAACTGGCTTCAAA TTTTGAGTGTGTTCT TERM 4714 4241130 - 4241109 - T 100 -14.5 -4.48987 | opp_overlap 4241103 4241096 CCCTTATAATCAAAA GCCAGTTGC TACA GCAACTGGC TTCAAATTTTGAGTG Shal_3480 4241829 - 4241155 - | RDD domain-containing protein Shal_3481 4242326 - 4243159 + | hypothetical protein TERM 4715 4243317 - 4243259 - T 100 -14.8 -3.01912 | opp_overlap 4243275, overlap 4243275 GGACATTGATATATA GAGATTGATATAAAAAGTCCGGCACTTG CAC CAAGTGTCGAACTTTTTCTTACAACCTC ATAAGCACCTGATAC TERM 4716 4243301 - 4243275 - T 95 -11.6 -4.99638 | opp_overlap 4243275, overlap 4243259 AGATTGATATAAAAA GTCCGGCACTTG CAC CAAGTGTCGAAC TTTTTCTTACAACCT TERM 4717 4243275 - 4243301 + T 95 -11.6 -5.06816 | opp_overlap 4243259 4243275 AGATTGATATAAAAA GTCCGGCACTTG CAC CAAGTGTCGAAC TTTTTCTTACAACCT Shal_3482 4244222 - 4243341 - | hypothetical protein TERM 4718 4244094 - 4244105 + g 74 -5.8 -4.60041 | AGACAGGTCGATATT CAGC TTAA GCTG TTTTTGGAAATCGGT TERM 4719 4245354 - 4245332 - g 90 -9.9 -4.54821 | ACTGTAACCAGAAAA CAAGACGCT GTAGA AGCGTCTCG ACCAGCTCAGACACT Shal_3483 4244665 - 4246629 + | peptidase M4 thermolysin TERM 4720 4246717 - 4246694 - f 93 -12.5 -3.89614 | opp_overlap 4246694 TTTAATTGGTATAAA CATGCCCAG TTCTAG CTGGGCATG TTCTTGAGTTGTAGC TERM 4721 4246694 - 4246717 + F 95 -13.2 -3.75766 | opp_overlap 4246694 TTTAATTGGTATAAA CATGCCCAGT TCTA GCTGGGCATG TTCTTGAGTTGTAGC TERM 4722 4247800 - 4247781 - g 70 -4.9 -4.46615 | opp_overlap 4247784 CACCATGAAGCAAAA CGGTGGC TATGAC GCCATCG TTAACAAGCATATGA Shal_3484 4247083 - 4247820 + | extracellular solute-binding protein Shal_3485 4247828 - 4248508 + | polar amino acid ABC transporter, inner membrane subunit Shal_3486 4248501 - 4249226 + | ABC transporter related TERM 4723 4249269 - 4249252 - f 78 -2.7 -5.44721 | overlap 4249238 4249255 AGCACTTTAAAAAAA GCACTTT AAAA AAAGCAC TTAAATAGAATGCTT Shal_3487 4249460 - 4249939 + | YbaK/prolyl-tRNA synthetase associated region TERM 4724 4249993 - 4249969 - f 71 -7.1 -3.95042 | overlap 4249970 AAAACGCTAAGTAAA TGGGACAGAGA CAC TTTCTGTCCCT CAGCTTTAGCCCCTC TERM 4725 4249992 - 4249970 - f 78 -10.6 -2.95941 | overlap 4249969 AAACGCTAAGTAAAT GGGACAGAGA CAC TTTCTGTCCC TCAGCTTTAGCCCCT Shal_3488 4250167 - 4250658 + | hypothetical protein Shal_3489 4251093 - 4251668 + | NAD(P)H dehydrogenase (quinone) Shal_3490 4251713 - 4252960 + | Na+ dependent nucleoside transporter TERM 4726 4253019 - 4252996 - f 93 -9.7 -4.78107 | opp_overlap 4252996 TATCATCACTAAAAA TGCTTACTC TCAAGG GAGTAAGCA TTTTTTTATCACTTA TERM 4727 4252996 - 4253019 + F 100 -10.4 -5.66684 | opp_overlap 4252996 TATCATCACTAAAAA TGCTTACTCT CAAG GGAGTAAGCA TTTTTTTATCACTTA TERM 4728 4253354 - 4253337 - g 71 -3.3 -4.88795 | AGCCAATAAAATAAA GGCTAGC CCAA ACAAGCC AAAAGACGCTGAAGC TERM 4729 4253918 - 4253939 + G 73 -4.3 -4.88228 | opp_overlap 4253938, overlap 4253919 4253938 ATGGCGGCTTTGGCG ACTTCGGCG GTGA CGACGAAGA TTTTTAATCTTGCGT Shal_3491 4253287 - 4253946 + | putative periplasmic ligand-binding sensor protein Shal_3492 4254236 - 4256278 + | peptidase S9 prolyl oligopeptidase TERM 4730 4256347 - 4256318 - T 82 -10.8 -3.52164 | opp_overlap 4256323, overlap 4256323 CGATAAACAAACAGA TAAAAGGCTGCC AATTTA GGCAGCCTTTTT ATTTGCGAAATCAAA TERM 4731 4256342 - 4256323 - T 93 -10.7 -4.77778 | opp_overlap 4256323, overlap 4256318 AACAAACAGATAAAA GGCTGCC AATTTA GGCAGCC TTTTTATTTGCGAAA TERM 4732 4256323 - 4256342 + T 100 -10.7 -5.27335 | opp_overlap 4256318 4256323 AACAAACAGATAAAA GGCTGCC AATTTA GGCAGCC TTTTTATTTGCGAAA Shal_3493 4256657 - 4256415 - | hypothetical protein TERM 4733 4256902 - 4256875 - R 75 -10 -3.2327 | gap 1, opp_overlap 4256875 4256878, overlap 4256877 4256878 TCAATCGACGATTAA TATTTGGGGGCAA ACT CTGCCCCC-AATA TTTTACCAATCACAT TERM 4734 4256875 - 4256902 + r 83 -9.3 -4.11394 | gap 1, opp_overlap 4256875 4256877 4256878, overlap 4256878 TCAATCGACGATTAA TATTTGGGGGCA AACTC TGCCCCC-AATA TTTTACCAATCACAT TERM 4735 4256901 - 4256877 - R 79 -10.7 -3.17794 | opp_overlap 4256875 4256878, overlap 4256875 4256878 AATCGACGATTAATA TTTGGGGGCAA ACT CTGCCCCCAAT ATTTTACCAATCACA TERM 4736 4256878 - 4256900 + r 95 -13.5 -3.65542 | opp_overlap 4256877 4256875 4256878, overlap 4256875 ATCGACGATTAATAT TTGGGGGCA AACTC TGCCCCCAA TATTTTACCAATCAC TERM 4737 4256900 - 4256878 - R 93 -14.2 -2.50195 | opp_overlap 4256878 4256875, overlap 4256877 4256875 ATCGACGATTAATAT TTGGGGGCAA ACT CTGCCCCCAA TATTTTACCAATCAC Shal_3494 4261486 - 4256966 - | hypothetical protein TERM 4738 4259937 - 4259922 - G 72 -10.4 -2.91689 | overlap 4259921 AAAGGCAGATTAAAG GTGGCG GTTT CGCCAC TGACCTTGTCAGGTA TERM 4739 4260934 - 4260950 + g 80 -7.3 -4.63527 | CTTGAGCATCGTTGG CTTGCTG CTC TAGCAAG TTTTTGAAATCCTCC TERM 4740 4261735 - 4261768 + r 100 -19.9 -3.55761 | opp_overlap 4261735 4261740, overlap 4261740 GTGGCTTGAGCTAAA TAAAAGAAGCTGCCA AATA TGGCAGCTTCTTTTA TTTAGGGACTGGATA TERM 4741 4261768 - 4261735 - R 100 -19.9 -3.64703 | opp_overlap 4261735 4261740, overlap 4261740 GTGGCTTGAGCTAAA TAAAAGAAGCTGCCA AATA TGGCAGCTTCTTTTA TTTAGGGACTGGATA TERM 4742 4261740 - 4261763 + r 100 -15.4 -4.87133 | opp_overlap 4261735 4261740, overlap 4261735 TTGAGCTAAATAAAA GAAGCTGCCA AATA TGGCAGCTTC TTTTATTTAGGGACT TERM 4743 4261763 - 4261740 - R 100 -15.4 -4.90778 | opp_overlap 4261740 4261735, overlap 4261735 TTGAGCTAAATAAAA GAAGCTGCCA AATA TGGCAGCTTC TTTTATTTAGGGACT Shal_3495 4263627 - 4261792 - | hypothetical protein TERM 4744 4267465 - 4267441 - g 76 -5 -4.79223 | gap 1, opp_overlap 4267442 4267444, overlap 4267442 4267444 4267445 GTATATGATTAAAAA CTAC-CGCCCA TGTA TGGGCGAGTAT ATTGCCGCCATGGCG TERM 4745 4267460 - 4267445 - g 70 -10.4 -2.57003 | opp_overlap 4267444 4267442, overlap 4267444 4267442 4267441 ATGATTAAAAACTAC CGCCCA TGTA TGGGCG AGTATATTGCCGCCA TERM 4746 4267620 - 4267604 - g 71 -7.3 -4.05446 | TTCGCCAAGGAGAAA TCACGAA AAA TCCGTGA CAAGGTTGAGGCTGC Shal_3496 4264058 - 4267645 + | hypothetical protein TERM 4747 4267729 - 4267706 - f 82 -6 -4.88407 | gap 1, opp_overlap 4267706 TGATGTAACTAAAAA GCGCTAGTCCA TTT TTG-CTAGCGC TTTTTATCATACCAA TERM 4748 4267706 - 4267729 + F 82 -6 -4.91109 | gap 1, opp_overlap 4267706 TGATGTAACTAAAAA GCGCTAGTCCA TTT TTG-CTAGCGC TTTTTATCATACCAA Shal_3499 4269973 - 4270269 + | hypothetical protein TERM 4749 4270322 - 4270352 + T 95 -13.6 -3.78409 | opp_overlap 4270325 4270330, overlap 4270325 4270330 ACTGCGGTCTCGACA TAATAAAAGGGAAG CTC TTTCCCTTTTATTA TTTGAATTAACTTAA TERM 4750 4270325 - 4270349 + T 88 -10.9 -4.01381 | opp_overlap 4270325 4270330, overlap 4270322 4270330 GCGGTCTCGACATAA TAAAAGGGAAG CTC TTTCCCTTTTA TTATTTGAATTAACT TERM 4751 4270349 - 4270325 - T 79 -10.2 -3.48276 | opp_overlap 4270325 4270322 4270330, overlap 4270330 GCGGTCTCGACATAA TAAAAGGGAA GCTCT TTCCCTTTTA TTATTTGAATTAACT TERM 4752 4270344 - 4270330 - T 79 -5.7 -4.84311 | opp_overlap 4270325 4270322 4270330, overlap 4270325 CTCGACATAATAAAA GGGAA GCTCT TTCCC TTTTATTATTTGAAT TERM 4753 4270330 - 4270344 + T 83 -6.4 -5.011 | opp_overlap 4270330 4270325, overlap 4270325 4270322 CTCGACATAATAAAA GGGAAG CTC TTTCCC TTTTATTATTTGAAT Shal_3500 4271746 - 4270445 - | NADH dehydrogenase TERM 4754 4272455 - 4272440 - g 82 -5.4 -5.12987 | CTAAAGAAAAACAAA TACACC GACT GGCGTA AGTTTGCCTACCCTC Shal_3501 4272164 - 4272550 + | hypothetical protein TERM 4755 4272569 - 4272588 + T 100 -10.8 -5.252 | opp_overlap 4272569 CTTTCAAAACAAAAA TGACCACA TTGA TGTGGTCA TTTTTTATCAAACTA TERM 4756 4272588 - 4272569 - T 100 -10.8 -5.45802 | opp_overlap 4272569 CTTTCAAAACAAAAA TGACCACA TTGA TGTGGTCA TTTTTTATCAAACTA Shal_3502 4273150 - 4272623 - | putative lipoprotein Shal_3503 4274024 - 4273293 - | AraC family transcriptional regulator TERM 4757 4273940 - 4273959 + g 83 -10.8 -3.77831 | opp_overlap 4273937 TCACAAAACCATTCA GTGCCAAT ACCA ATTGGCAC TTTCGATGTTGATGA Shal_3504 4274182 - 4275432 + | major facilitator transporter Shal_3505 4276560 - 4275499 - | hypothetical protein TERM 4758 4276068 - 4276097 + g 88 -14.5 -3.05384 | gap 1, opp_overlap 4276075, overlap 4276075 GCGCCTCACGGGGCT GCATTAAGCTCGCC TTA GGC-AGCTTAATGC TTGGATCAGGAAACA Shal_3506 4277673 - 4276606 - | secretion protein HlyD family protein TERM 4759 4276762 - 4276786 + g 72 -8.5 -3.7732 | overlap 4276763 TAAATTAATTCGGAC TCGCTGGGCAT CTC GTACCCAGCGG TTGTTGGTCTCAACA Shal_3507 4277774 - 4278640 + | LysR family transcriptional regulator TERM 4760 4278753 - 4278775 + T 80 -6.2 -4.75472 | opp_overlap 4278754, overlap 4278754 TATAAAAATAAAAAA ACCAGTAACG AAT CGCTACTGGC TTTTATTAATATCAA TERM 4761 4278774 - 4278754 - T 100 -11.9 -6.23317 | opp_overlap 4278753 4278754 ATAAAAATAAAAAAA CCAGTAACG AAT CGCTACTGG CTTTTATTAATATCA TERM 4762 4278754 - 4278774 + T 77 -9.7 -3.4456 | opp_overlap 4278754, overlap 4278753 ATAAAAATAAAAAAA CCAGTAACG AAT CGCTACTGG CTTTTATTAATATCA Shal_3508 4281665 - 4278831 - | TonB-dependent receptor TERM 4763 4280194 - 4280217 + g 74 -10.4 -3.18264 | opp_overlap 4280187 TCGATAGACTCTTGA CTTGCTTGGT TTAC ACCAAGTAAG TTCATAGGTACACAC TERM 4764 4280518 - 4280544 + g 70 -8.8 -3.30124 | opp_overlap 4280518 4280517 GTATCAGCCATTAAC TGCTTTGTTTCC TCA GGAAGAAAAGCA TTATCAGCCATGACA TERM 4765 4281986 - 4281962 - R 100 -16.5 -5.80951 | AGGCAAAATAAAAAA GGGGCTGCACA TAA TGTGCAACCCC TTCAGATGACAGGCG Shal_3509 4283425 - 4282043 - | Na+/H+ antiporter NhaC Shal_3510 4284686 - 4283793 - | hypothetical protein TERM 4766 4285122 - 4285136 + G 76 -8.6 -4.15044 | opp_overlap 4285121 CTCATGCTCAACTAT CCCTTT CTT AAAGGG TTTATTAAGAGCAAA TERM 4767 4285447 - 4285467 + G 77 -11.2 -3.14693 | opp_overlap 4285418, overlap 4285445 4285442 CCTGCACCAGCTGTT GCAGCAAC CACAA GTTGCTGC TCTGTTCCTGCTGCG Shal_3511 4284895 - 4285959 + | permease TERM 4768 4286065 - 4286111 + F 90 -7.4 -5.1963 | opp_overlap 4286062 AATGACGTATAATCG CACCGCAATGACAAATTTAG CAATTAC TTAACTTTGTCTGTGCGGTG TTTTTATTAGTTCAG TERM 4769 4286332 - 4286296 - g 84 -10.3 -3.97689 | gap 1, opp_overlap 4286301 TACAACCGCAAACAA CAGAAGGGGCAAAAGC TGAAGG GCTTT-GCCCCTTTTG ACTATCTGGCATTCG TERM 4770 4286301 - 4286327 + G 87 -9.5 -4.26188 | gap 1, opp_overlap 4286296 CCGCAAACAACAGAA GGGGCAAAAGCT GAAG GGC-TTTGCCCC TTTTGACTATCTGGC Shal_3512 4286143 - 4286358 + | hypothetical protein Shal_3513 4287162 - 4286386 - | cold-shock DNA-binding domain-containing protein TERM 4771 4286581 - 4286571 - G 74 -6.8 -4.2828 | opp_overlap 4286571 TGTGAGCGACTAAAA CGGT CTG ACCG TGTGGTAATGTCAAA Shal_3514 4288055 - 4287162 - | 3'-5' exonuclease TERM 4772 4288002 - 4288019 + g 73 -7.7 -4.04206 | ATCTTTGCCTAACTC TCTGCGA ATCG TCGCGGA TTTATCTGCCGCTAA Shal_3515 4288696 - 4288097 - | hypothetical protein Shal_3516 4288943 - 4290235 + | hypothetical protein TERM 4773 4290275 - 4290245 - T 78 -2.6 -5.40464 | opp_overlap 4290247 4290272, overlap 4290247 GAGTAGAAATAAAAA GAGCCGTAAC TCAGAGGTTTT GTTACGGCTT TGAAGGCTTAACTCA Shal_3517 4290929 - 4290393 - | hypothetical protein Shal_3518 4291761 - 4290940 - | cytochrome c, putative Shal_3519 4292217 - 4292969 + | transcriptional regulator, CadC Shal_3520 4293030 - 4293548 + | hypothetical protein TERM 4774 4293561 - 4293589 + T 74 -6 -4.32049 | opp_overlap 4293566, overlap 4293566 TAGCACTCCACATTT AAAAAGCCACCT TGCTT AGGTGGCTTTCA TTTTAATCGATTATC TERM 4775 4293566 - 4293584 + T 89 -10.3 -4.23781 | opp_overlap 4293566, overlap 4293561 CTCCACATTTAAAAA GCCACCT TGCTT AGGTGGC TTTCATTTTAATCGA TERM 4776 4293584 - 4293566 - T 93 -10.3 -4.70659 | opp_overlap 4293566 4293561 CTCCACATTTAAAAA GCCACCT TGCTT AGGTGGC TTTCATTTTAATCGA Shal_3521 4294430 - 4293600 - | hypothetical protein TERM 4777 4294143 - 4294129 - G 73 -4.3 -4.86001 | ATCACCTCAGAAAAA TGGTA CAAGT TACCA TCGACCGAGAATGCA Shal_3522 4294915 - 4295574 + | DSBA oxidoreductase TERM 4778 4295597 - 4295612 + T 100 -10.4 -5.54885 | opp_overlap 4295597 TGATAACTCCCCAAA GGCGCT AATT AGCGCC TTTTTTGTTAATGTT TERM 4779 4295612 - 4295597 - T 79 -10.4 -3.58533 | opp_overlap 4295597 TGATAACTCCCCAAA GGCGCT AATT AGCGCC TTTTTTGTTAATGTT Shal_3523 4296669 - 4295656 - | glycosyl transferase group 1 TERM 4780 4296987 - 4296971 - R 72 -9.5 -3.01712 | CCTCTCGTTCGAAGA GTATCTC TTT GAGATAC CTCACCTTGAAACCT Shal_3524 4298521 - 4297991 - | hypothetical protein Shal_3525 4299072 - 4298539 - | protoporphyrinogen oxidase TERM 4781 4299138 - 4299121 - R 73 -5.7 -4.49531 | AATAAAATTAATAAA TAAATCA TAGG TGATTTA GTTAGAAGATTACAT TERM 4782 4299216 - 4299248 + r 74 -4.8 -4.82855 | gap 1, opp_overlap 4299216 4299234 ACCTCACAAAATCAA CAGCGGAGC-TCCTC AAAA GAGAAAGTCCCGCTG TTTTTGCGTTTACTG Shal_3526 4300955 - 4299291 - | hypothetical protein TERM 4783 4301089 - 4301072 - R 100 -12.7 -4.88407 | opp_overlap 4301066 4301075 TTATTTAATTAAAAA GGAGGCC CAAT GGCCTCC TTCGCATATTCTCGG Shal_3527 4302254 - 4301106 - | putative lipoprotein Shal_3528 4303712 - 4302288 - | hypothetical protein TERM 4784 4303517 - 4303539 + g 78 -12.8 -2.6381 | overlap 4303521 CAGCGTTAACTTGTT GCAGCTCTTG TTG CAAGAGTTGC TGCTCTGCCAATTGT Shal_3529 4304505 - 4305365 + | hypothetical protein Shal_3530 4305979 - 4305362 - | adenylyl-sulfate kinase TERM 4785 4305718 - 4305736 + g 71 -10.2 -2.64416 | overlap 4305717 CCATGAGTTTGGCAA CCTCGCCG ACG CGGCGAAG ATTCTCATCGCGATC Shal_3531 4307809 - 4306085 - | TrkA domain-containing protein TERM 4786 4307517 - 4307501 - G 72 -8.7 -3.73775 | GGTATTGTTAGTAAA CGACGAT AAT ATCGCCG TCGAGAAACCTAGCT TERM 4787 4307647 - 4307673 + g 79 -10.2 -3.57144 | opp_overlap 4307646 4307647, overlap 4307648 CTAGGGTGACTAAAC TGGCATTGGTAA AAC TTGCCAGTGCCG TTTCAAGCTCGACCA TERM 4788 4307648 - 4307672 + g 73 -11.5 -2.74144 | opp_overlap 4307646 4307647, overlap 4307647 TAGGGTGACTAAACT GGCATTGGTAA AAC TTGCCAGTGCC GTTTCAAGCTCGACC Shal_3532 4309251 - 4307812 - | sulfate adenylyltransferase subunit 1 TERM 4789 4308139 - 4308151 + g 72 -4.8 -4.66163 | overlap 4308145 TTCAATTTTTACCAC GCTG GCTTG CAGC TTTTTACCTGCAACT TERM 4790 4309106 - 4309078 - G 72 -10.4 -2.91276 | gap 1, overlap 4309077 TTGGTCTTCATAAAT TTGGGCGC-TGTC ATGC AACAAGCGCCCAA TCAAGGTACTCTTGC Shal_3533 4310208 - 4309300 - | sulfate adenylyltransferase subunit 2 Shal_3534 4311056 - 4310235 - | uroporphyrin-III C-methyltransferase TERM 4791 4310345 - 4310302 - G 72 -9 -3.52204 | gap 1, overlap 4310298 4310306 TTAGGCGTAAACCAA TTAA-GGCTATCGGCGAGCTC GAC GACCTCGCCAATGACCATTAA GGCGGGCATCATCAA TERM 4792 4310340 - 4310306 - G 82 -11.4 -3.5013 | overlap 4310302 4310298 GCGTAAACCAATTAA GGCTATCGGCGAGCTC GAC GACCTCGCCAATGACC ATTAAGGCGGGCATC TERM 4793 4310423 - 4310455 + g 71 -6.9 -4.02132 | overlap 4310417 4310426 AGGTTTGCTGCTCGA CAGTCGTAGCTTTCG ATA CGATAGCAACGGGTG TTTGTGGCTTTCGGC TERM 4794 4310754 - 4310765 + g 71 -7.2 -4.07568 | opp_overlap 4310754, overlap 4310754 GCGACCGAAAATAAA GGGG TCCC CCCC TTTTAAGCGCACCAC TERM 4795 4310764 - 4310754 - G 84 -8.2 -4.68908 | opp_overlap 4310754 4310754 GCGACCGAAAATAAA GGGG TCC CCCC CTTTTAAGCGCACCA Shal_3535 4311470 - 4312435 + | phospholipase A(1) TERM 4796 4313476 - 4313455 - g 74 -5.9 -4.63218 | opp_overlap 4313458 GTTTTCTCAACAAAA TAAGCCG CAAAGTAT CGGCTTA TTACAATACAAGCGC Shal_3536 4312517 - 4314034 + | hypothetical protein Shal_3537 4314131 - 4314991 + | protein of unknown function RIO1 TERM 4797 4315075 - 4315050 - T 100 -17.7 -5.69793 | opp_overlap 4315050 ATACCAAATAAAAAA GCCCTGCAATG TCGC CATTGCAGGGC TTTTGAATCTATCCT TERM 4798 4315050 - 4315075 + T 100 -17.7 -4.26589 | opp_overlap 4315050 ATACCAAATAAAAAA GCCCTGCAATG TCGC CATTGCAGGGC TTTTGAATCTATCCT Shal_3538 4315665 - 4315117 - | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Shal_3539 4316209 - 4315787 - | hypothetical protein TERM 4799 4316268 - 4316247 - R 100 -11.6 -5.27938 | opp_overlap 4316241 ATTGGTAAATAAAAA CGTCAGCC TTGATG GGCTGACG CTTGCGATTGCTCAT Shal_3540 4318038 - 4316314 - | hypothetical protein TERM 4800 4318281 - 4318247 - R 100 -15.8 -4.92239 | CTAAAAACGTAAAAA CCCCAGGCAACCTTGC ATA ACAAGGCTACCTGAGG ACAACTCGCTTGATA TERM 4801 4318625 - 4318613 - R 77 -4.9 -4.98758 | overlap 4318621 AAAAATGTACAAAAA TAAAC AAA GTTTA ATACTAAAGAACTAA Shal_3541 4319535 - 4318765 - | phosphoadenosine phosphosulfate reductase Shal_3542 4321225 - 4319528 - | sulfite reductase subunit beta TERM 4802 4320916 - 4320896 - G 72 -8.3 -3.72968 | opp_overlap 4320894 4320908 ACCATGATACTGAAA CGTTTGACG CGT CGTTAAACG GATACTGTTTGCGCT Shal_3543 4323117 - 4321309 - | sulfite reductase (NADPH) flavoprotein, alpha chain TERM 4803 4324574 - 4324591 + G 83 -9.1 -4.19953 | overlap 4324562 AAGGCGAAGTGGCCA GTTCGCG TTTA CGCGAGC TTTTAGGCTTACCTG Shal_3544 4323436 - 4324650 + | NAD(P)(+) transhydrogenase (AB-specific) Shal_3545 4324650 - 4324925 + | oxidoreductase Shal_3546 4324932 - 4326314 + | NAD(P)(+) transhydrogenase (AB-specific) TERM 4804 4326360 - 4326345 - f 71 -6 -4.2349 | opp_overlap 4326345 GCTCTACATCTAAAA GGTCGC TAAT GCGGCC TTTCTTTTTACTCAA TERM 4805 4326345 - 4326360 + F 86 -8.2 -4.91852 | opp_overlap 4326345 GCTCTACATCTAAAA GGTCGC TAAT GCGGCC TTTCTTTTTACTCAA TERM 4806 4327317 - 4327293 - g 100 -9.3 -5.27779 | overlap 4327296 CCCAATAGCAAAAAA TACTCGGCGCA ACC TGCGCCAACTA AGCGCAAAGAGGGCA TERM 4807 4327314 - 4327296 - g 77 -11 -3.14212 | overlap 4327293 AATAGCAAAAAATAC TCGGCGCA ACC TGCGCCAA CTAAGCGCAAAGAGG Shal_3547 4326495 - 4327883 + | MltA-interacting MipA family protein TERM 4808 4328126 - 4328097 - T 95 -15.1 -2.72144 | opp_overlap 4328097, overlap 4328101 4328104 TTATCGCTTTTAAAG CAAAGAACCCTGC TTAT GCAGGGTTCTTAG TTTTTGTTTATTAAT TERM 4809 4328097 - 4328126 + T 100 -15.1 -5.48514 | opp_overlap 4328097 4328101 4328104 TTATCGCTTTTAAAG CAAAGAACCCTGC TTAT GCAGGGTTCTTAG TTTTTGTTTATTAAT TERM 4810 4328122 - 4328101 - T 100 -14.5 -4.05788 | opp_overlap 4328097, overlap 4328097 4328104 CGCTTTTAAAGCAAA GAACCCTGC TTAT GCAGGGTTC TTAGTTTTTGTTTAT TERM 4811 4328119 - 4328104 - T 89 -10.4 -4.15396 | opp_overlap 4328097, overlap 4328101 4328097 TTTTAAAGCAAAGAA CCCTGC TTAT GCAGGG TTCTTAGTTTTTGTT Shal_3548 4328682 - 4328206 - | TetR family transcriptional regulator TERM 4812 4328392 - 4328419 + g 93 -10.8 -4.59511 | gap 1, overlap 4328392 GAACAATCTTATTAT CGCCCTAAAA-TA GGG TATTTTTAGGGCG TTTTTCCAAGATGTT Shal_3549 4329668 - 4328778 - | hypothetical protein Shal_3550 4331139 - 4329709 - | bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase Shal_3551 4331240 - 4332166 + | lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Shal_3552 4333092 - 4332565 - | ECF subfamily RNA polymerase sigma-24 factor Shal_3553 4333694 - 4333215 - | hypothetical protein TERM 4813 4333940 - 4333952 + H 75 -7.7 -4.03413 | opp_overlap 4333940 4333939 CGAAGTTGCCGAAAT GCGTT GAA AACGC TTTATATACCAGAGT TERM 4814 4334161 - 4334177 + H 72 -9.5 -3.08467 | CTCACGACCTTAGTT GTTAGAC GCA GTCTAAC TCTCTACTTTATCAA TERM 4815 4334189 - 4334203 + H 85 -8.6 -4.36596 | TAACTCTCTACTTTA TCAAGC GCA GCTTGA TTTCTTAATTCTCCC TERM 4816 4334541 - 4334500 - g 77 -11.8 -2.78996 | overlap 4334499 4334512 TATCGGCAGTGAAAT TTATCGAGAAAAGCCACC TATCCC GACGGCTTTTGTCGATAA CCAAGGACAAACACT TERM 4817 4334816 - 4334803 - g 72 -5.3 -4.61633 | AGATATTCGCAAAAA TAGTG TCAT CACTA AAGCCAATGGTGAAA Shal_3554 4334414 - 4336708 + | nitric-oxide reductase TERM 4818 4336820 - 4336845 + F 100 -10.5 -5.31519 | opp_overlap 4336820 4336823 TTTATACTTCAGTAA TAAGGGCTTCT TTAT GGAGGCCCTTA TTTTTATTTGCATCT TERM 4819 4338225 - 4338207 - g 88 -7.5 -5.00895 | overlap 4338211 CGCAGCAGAGAAAAA TTAGGCT TAAAG AGCCTAA GCTTGAGCCCTGACA Shal_3555 4337061 - 4338641 + | anaerobic nitric oxide reductase transcription regulator TERM 4820 4341178 - 4341164 - g 78 -6.4 -4.57837 | overlap 4341152 AGACGCCTTTAAAAA TGCGCT CCC AGCACA AGATGCTGCCCCCTC Shal_3558 4340265 - 4341887 + | peptidase M16 domain-containing protein TERM 4821 4342470 - 4342452 - g 80 -9.6 -3.9279 | opp_overlap 4342451 ACTTAATGCGAGAAA TCACCCTT AAC AAGGGCGA GCTATTTACTATTGT Shal_3559 4342043 - 4343056 + | StbA family protein Shal_3560 4343067 - 4343783 + | hypothetical protein TERM 4822 4343819 - 4343837 + T 100 -6 -5.86332 | opp_overlap 4343813 4343819 CGTTAAAAATAGAAA TCCACC GCATTAG GGTGGA TTTTTTTTGGCTTAC TERM 4823 4343837 - 4343819 - T 77 -6 -4.55887 | opp_overlap 4343819, overlap 4343813 CGTTAAAAATAGAAA TCCACC GCATTAG GGTGGA TTTTTTTTGGCTTAC Shal_3561 4345301 - 4343979 - | D-serine dehydratase Shal_3562 4346661 - 4345324 - | permease DsdX TERM 4824 4346715 - 4346695 - H 70 -3.3 -4.8384 | overlap 4346696 GAAAGAAGTTAAAAA CCTATCG AAACAAG CGATAGA AAGTGGCGCTATTAA Shal_3563 4346916 - 4347860 + | DNA-binding transcriptional regulator DsdC TERM 4825 4348069 - 4348057 - g 72 -4.8 -4.62069 | opp_overlap 4348057 TGGCGAGCCTAAAAA GGTC AAAGA GACC TTAATGCGTTTGGTG Shal_3564 4347971 - 4348240 + | hypothetical protein Shal_3565 4348323 - 4349183 + | hypothetical protein TERM 4826 4349229 - 4349253 + T 100 -14.4 -3.53012 | TCTGATTGCGCGTAA CCTTGTGAGC TTACT GCTCACAAGG TTTACAGCAGAGAAG Shal_3566 4350017 - 4349307 - | hypothetical protein Shal_3567 4350779 - 4350303 - | hypothetical protein Shal_3568 4351308 - 4350802 - | hypothetical protein TERM 4827 4351515 - 4351501 - H 73 -10 -2.87132 | TGGCTTGGCCACATA TCAGGC TAC GCCTGA CTAAGGTCGTGAGCT TERM 4828 4352117 - 4352102 - g 73 -4 -4.73388 | AAGTGGTATCAAAAA GCACTT CAAG AAGTAC ATTAATACTCCAGAA TERM 4829 4353378 - 4353366 - g 70 -4.9 -4.42062 | opp_overlap 4353366 GATGTTGTAAAGAAA TTAGA ATA TCTAA TACTTGAACGATACC TERM 4830 4353945 - 4353925 - g 78 -6.1 -4.72333 | AAGGATATGTAAAAA CCTGGGCAA CGA TTACCAAGG ACTTTGAACTAACCA Shal_3569 4352049 - 4354058 + | putative DNA mismatch repair protein TERM 4831 4354285 - 4354306 + T 73 -8.1 -3.84246 | gap 1 CCCCTTCTTGGCCGA GT-GTGAGCT GGA AGCTCACGAC TTTAATCGTTAGACG Shal_3570 4354818 - 4354378 - | hypothetical protein TERM 4832 4354519 - 4354507 - G 76 -7.7 -4.32857 | CGCCCCAAAGACAAA CGACT CAA AGTCG CCATCTTCCTCTGCG Shal_3571 4355674 - 4354991 - | hypothetical protein TERM 4833 4355880 - 4355856 - R 100 -13.6 -5.32882 | CACGAGCATAAAAAA TCCCCCACAG GGTCG CTGCGGGGGA TGAGATTTCACTCTA Shal_3572 4358808 - 4355935 - | (glutamate--ammonia-ligase) adenylyltransferase TERM 4834 4359958 - 4359970 + G 72 -9.1 -3.53224 | opp_overlap 4359968 GCCAAGTCGCGTACC GGCTC AAC GAGCC TTTCGAGACAAAGTA Shal_3573 4359160 - 4360119 + | hypothetical protein Shal_3574 4360133 - 4361032 + | hypothetical protein TERM 4835 4361032 - 4361075 + F 83 -9.8 -3.9281 | gap 1, opp_overlap 4361043, overlap 4361035 4361043 CGCCTTGATGGCTTA GATGAGATAAA-GGGAGCG CTTGATA CGCTCCCTTTTCTCTTATC TTATTTCGCGATCAT TERM 4836 4361035 - 4361070 + F 93 -12.8 -3.90464 | gap 1, opp_overlap 4361043, overlap 4361032 4361043 CTTGATGGCTTAGAT GAGATAAAGGGAGCG CTTGATA CGCTCCCTTT-TCTC TTATCTTATTTCGCG TERM 4837 4361063 - 4361043 - f 86 -10.4 -4.11404 | opp_overlap 4361043 4361035 4361032 CTTAGATGAGATAAA GGGAGCGC TTGAT ACGCTCCC TTTTCTCTTATCTTA TERM 4838 4361043 - 4361063 + F 93 -9.7 -4.79373 | opp_overlap 4361043, overlap 4361035 4361032 CTTAGATGAGATAAA GGGAGCG CTTGATA CGCTCCC TTTTCTCTTATCTTA Shal_3575 4361163 - 4362890 + | spermidine synthase Shal_3576 4362982 - 4363395 + | hypothetical protein TERM 4839 4363626 - 4363608 - g 82 -11 -3.55563 | opp_overlap 4363601 AGTCGATCGCCTAAA GCGCTCTG TAG CAGAGCAC GAAGGCTATGTGACT Shal_3577 4363408 - 4364097 + | phage shock protein A, PspA TERM 4840 4364210 - 4364178 - g 95 -12.1 -4.28994 | opp_overlap 4364178 4364186, overlap 4364179 4364183 GACCACCCATCAAAA CTCAACAAGGGAGAT ATG ATCTCCCTTGATGAC AGTTTTGCCTTGCCA TERM 4841 4364209 - 4364179 - g 100 -15.6 -3.16914 | opp_overlap 4364178 4364186, overlap 4364178 4364183 ACCACCCATCAAAAC TCAACAAGGGAGAT ATG ATCTCCCTTGATGA CAGTTTTGCCTTGCC TERM 4842 4364205 - 4364183 - g 100 -15 -3.39521 | opp_overlap 4364178 4364186, overlap 4364179 4364178 CCCATCAAAACTCAA CAAGGGAGAT ATG ATCTCCCTTG ATGACAGTTTTGCCT TERM 4843 4364186 - 4364202 + G 77 -10.9 -3.18429 | opp_overlap 4364183 4364179 4364178, overlap 4364178 ATCAAAACTCAACAA GGGAGAT ATG ATCTCCC TTGATGACAGTTTTG Shal_3578 4364109 - 4364759 + | hypothetical protein TERM 4844 4364797 - 4364761 - f 71 -6.7 -4.03234 | opp_overlap 4364765, overlap 4364765 GGCCTGGCACATAAA CTAATGGTTCTAAAACA TTC TGTTTTAGAGCCATTTT